DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.509e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.03950
In_2R_NS	0.03125

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	2.7147	0.0994
In_2R_NS	3.0862	0.079

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1254 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	7638621	X_7638621_SNP [dm3] X_7744588_SNP [dm6]	C	T	3.223e^-6	0.886	INTERGENIC
3R	26634537	3R_26634537_SNP [dm3] 3R_30808815_SNP [dm6]	C	G	3.579e^-6	0.886	UTR_5_PRIME cindr DOWNSTREAM dj-1beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_Trl
3L	10049471	3L_10049471_SNP [dm3] 3L_10056371_SNP [dm6]	T	A	8.850e^-6	0.886	INTRON dpr6
3R	15345164	3R_15345164_SNP [dm3] 3R_19519442_SNP [dm6]	T	A	1.066e^-5	0.886	INTRON Dys
3L	563672	3L_563672_SNP [dm3] 3L_563672_SNP [dm6]	C	T	1.242e^-5	0.886	INTRON hipk
X	7644981	X_7644981_SNP [dm3] X_7750948_SNP [dm6]	C	T	1.354e^-5	0.886	INTERGENIC
X	3093203	X_3093203_SNP [dm3] X_3199170_SNP [dm6]	A	G	1.388e^-5	0.886	INTRON dnc
X	7645099	X_7645099_SNP [dm3] X_7751066_SNP [dm6]	C	T	1.618e^-5	0.886	INTERGENIC
3L	4510294	3L_4510294_SNP [dm3] 3L_4510294_SNP [dm6]	A	T	1.776e^-5	0.886	DOWNSTREAM Tie INTERGENIC
3R	23947014	3R_23947014_SNP [dm3] 3R_28121292_SNP [dm6]	C	A	1.914e^-5	0.886	INTERGENIC
3L	2462011	3L_2462011_SNP [dm3] 3L_2462011_SNP [dm6]	T	C	2.007e^-5	0.886	UPSTREAM CG45186 INTRON CG45186
2R	13395531	2R_13395531_SNP [dm3] 2R_17508026_SNP [dm6]	C	T	2.214e^-5	0.886	SYNONYMOUS_CODING CG43164 UTR_3_PRIME CG43164 UPSTREAM CG34193 DOWNSTREAM CG43164	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4002780	2L_4002780_SNP [dm3] 2L_4002780_SNP [dm6]	G	T	2.217e^-5	0.886	INTERGENIC
3R	15465476	3R_15465476_SNP [dm3] 3R_19639754_SNP [dm6]	A	G	2.238e^-5	0.886	INTRON subdued
3R	26285218	3R_26285218_SNP [dm3] 3R_30459496_SNP [dm6]	A	T	2.245e^-5	0.886	UPSTREAM CDase & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4274296	3L_4274296_SNP [dm3] 3L_4274296_SNP [dm6]	C	T	2.413e^-5	0.886	SYNONYMOUS_CODING CG1273
3L	3982044	3L_3982044_SNP [dm3] 3L_3982044_SNP [dm6]	A	G	2.480e^-5	0.886	INTERGENIC	regulatory region REDfly_CRMs
3L	1180021	3L_1180021_SNP [dm3] 3L_1180021_SNP [dm6]	T	G	2.572e^-5	0.886	INTERGENIC
2R	17365898	2R_17365898_SNP [dm3] 2R_21478393_SNP [dm6]	G	C	2.577e^-5	0.886	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19576349	2R_19576349_SNP [dm3] 2R_23688826_SNP [dm6]	G	A	2.940e^-5	0.886	DOWNSTREAM St3 INTRON Pal2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16006524	2R_16006524_SNP [dm3] 2R_20119019_SNP [dm6]	A	G	3.094e^-5	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9035967	2R_9035967_SNP [dm3] 2R_13148462_SNP [dm6]	A	G	3.248e^-5	0.886	INTRON Ack-like	TF binding site mE1_TFBS_cad
X	16624772	X_16624772_SNP [dm3] X_16730739_SNP [dm6]	T	A	3.360e^-5	0.886	UPSTREAM TwdlX INTRON CG9634
X	9193364	X_9193364_DEL [dm3] X_9299331_DEL [dm6]	TGGG	T	3.508e^-5	0.886	INTRON lz
X	9193351	X_9193351_SNP [dm3] X_9299318_SNP [dm6]	A	C	3.539e^-5	0.886	INTRON lz
2L	6921457	2L_6921457_SNP [dm3] 2L_6921457_SNP [dm6]	T	A	3.629e^-5	0.886	UPSTREAM Hrb27C INTRON Hrb27C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3L	14077787	3L_14077787_SNP [dm3] 3L_14084687_SNP [dm6]	T	A	3.746e^-5	0.886	NON_SYNONYMOUS_CODING CG8100
3R	11861202	3R_11861202_SNP [dm3] 3R_16035480_SNP [dm6]	A	G	3.828e^-5	0.886	INTRON pnr	TF binding site BDTNP1_TFBS_dl
3L	18826284	3L_18826284_SNP [dm3] 3L_18833184_SNP [dm6]	T	C	4.027e^-5	0.886	INTRON Indy	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	18481833	2R_18481833_SNP [dm3] 2R_22594328_SNP [dm6]	C	T	4.176e^-5	0.886	UPSTREAM CG3927 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19086369	2L_19086369_SNP [dm3] 2L_19086369_SNP [dm6]	T	C	4.353e^-5	0.886	INTRON Lim3
2L	6920050	2L_6920050_SNP [dm3] 2L_6920050_SNP [dm6]	T	A	4.435e^-5	0.886	UTR_5_PRIME x16 UPSTREAM Hrb27C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
3R	9649640	3R_9649640_SNP [dm3] 3R_13823918_SNP [dm6]	C	A	4.545e^-5	0.886	INTERGENIC
3R	22226623	3R_22226623_SNP [dm3] 3R_26400901_SNP [dm6]	A	G	4.825e^-5	0.886	INTERGENIC
3R	22226628	3R_22226628_SNP [dm3] 3R_26400906_SNP [dm6]	T	A	4.825e^-5	0.886	INTERGENIC
3R	22226630	3R_22226630_SNP [dm3] 3R_26400908_SNP [dm6]	T	C	4.825e^-5	0.886	INTERGENIC
3R	22226644	3R_22226644_SNP [dm3] 3R_26400922_SNP [dm6]	T	A	4.825e^-5	0.886	DOWNSTREAM ppk15 INTERGENIC
3L	5335487	3L_5335487_DEL [dm3] 3L_5342387_DEL [dm6]	TT	T	5.191e^-5	0.886	DOWNSTREAM tRNA:S7:64D INTERGENIC
3L	10798219	3L_10798219_SNP [dm3] 3L_10805119_SNP [dm6]	G	A	5.289e^-5	0.886	DOWNSTREAM CR44347 EXON CR44347
3R	23728354	3R_23728354_SNP [dm3] 3R_27902632_SNP [dm6]	G	A	5.376e^-5	0.886	INTRON CG34353
3L	2413171	3L_2413171_SNP [dm3] 3L_2413171_SNP [dm6]	G	T	5.687e^-5	0.886	UPSTREAM CG45186 INTRON CG45186
2L	6923253	2L_6923253_SNP [dm3] 2L_6923253_SNP [dm6]	T	A	5.727e^-5	0.886	INTRON Hrb27C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	13395553	2R_13395553_SNP [dm3] 2R_17508048_SNP [dm6]	A	T	5.940e^-5	0.886	NON_SYNONYMOUS_CODING CG43164 UTR_3_PRIME CG43164 UPSTREAM CG34193 DOWNSTREAM CG43164	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	20465975	2L_20465975_DEL [dm3] 2L_20465975_DEL [dm6]	AGGGTTTGA	A	6.022e^-5	0.886	INTRON CR44980
2R	16738843	2R_16738843_SNP [dm3] 2R_20851338_SNP [dm6]	G	A	6.094e^-5	0.886	SYNONYMOUS_CODING CG9993	TF binding site mE1_TFBS_sens
2R	11133114	2R_11133114_SNP [dm3] 2R_15245609_SNP [dm6]	C	G	6.163e^-5	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	6787192	2R_6787192_SNP [dm3] 2R_10899687_SNP [dm6]	C	G	6.217e^-5	0.886	UPSTREAM Rpb5 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25245486	3R_25245486_SNP [dm3] 3R_29419764_SNP [dm6]	T	A	6.248e^-5	0.886	INTRON Ptp99A
3L	5986926	3L_5986926_SNP [dm3] 3L_5993826_SNP [dm6]	G	T	6.337e^-5	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4274350	3L_4274350_SNP [dm3] 3L_4274350_SNP [dm6]	A	G	6.353e^-5	0.886	SYNONYMOUS_CODING CG1273
3R	11866709	3R_11866709_SNP [dm3] 3R_16040987_SNP [dm6]	T	C	6.424e^-5	0.886	UTR_3_PRIME pnr DOWNSTREAM pnr	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2L	9188842	2L_9188842_SNP [dm3] 2L_9188842_SNP [dm6]	C	T	6.440e^-5	0.886	INTRON tai
3R	14788733	3R_14788733_SNP [dm3] 3R_18963011_SNP [dm6]	T	G	6.465e^-5	0.886	INTRON CG42613 & 1 other
3L	5251795	3L_5251795_SNP [dm3] 3L_5258695_SNP [dm6]	G	T	6.474e^-5	0.886	INTRON shep
X	9193363	X_9193363_SNP [dm3] X_9299330_SNP [dm6]	G	A	6.511e^-5	0.886	INTRON lz
2L	8714881	2L_8714881_SNP [dm3] 2L_8714881_SNP [dm6]	A	T	6.553e^-5	0.886	UPSTREAM raw INTRON raw
2L	8714884	2L_8714884_SNP [dm3] 2L_8714884_SNP [dm6]	T	C	6.553e^-5	0.886	UPSTREAM raw INTRON raw
2L	8714885	2L_8714885_SNP [dm3] 2L_8714885_SNP [dm6]	T	A	6.553e^-5	0.886	UPSTREAM raw INTRON raw
2L	8714889	2L_8714889_SNP [dm3] 2L_8714889_SNP [dm6]	T	A	6.553e^-5	0.886	UPSTREAM raw INTRON raw
2L	8714891	2L_8714891_SNP [dm3] 2L_8714891_SNP [dm6]	T	G	6.553e^-5	0.886	UPSTREAM raw INTRON raw
3L	15901798	3L_15901798_SNP [dm3] 3L_15908698_SNP [dm6]	C	T	6.557e^-5	0.886	INTRON sff
2R	13395537	2R_13395537_SNP [dm3] 2R_17508032_SNP [dm6]	T	C	6.628e^-5	0.886	SYNONYMOUS_CODING CG43164 UTR_3_PRIME CG43164 UPSTREAM CG34193 DOWNSTREAM CG43164	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18221371	2L_18221371_SNP [dm3] 2L_18221371_SNP [dm6]	A	C	6.683e^-5	0.886	INTRON CG42750
3L	11326410	3L_11326410_SNP [dm3] 3L_11333310_SNP [dm6]	C	A	6.822e^-5	0.886	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9457782	2L_9457782_SNP [dm3] 2L_9457782_SNP [dm6]	A	G	6.922e^-5	0.886	INTRON numb
3R	23942769	3R_23942769_SNP [dm3] 3R_28117047_SNP [dm6]	A	T	6.947e^-5	0.886	INTERGENIC
3L	19619914	3L_19619914_SNP [dm3] 3L_19626814_SNP [dm6]	G	T	7.008e^-5	0.886	NON_SYNONYMOUS_CODING wnd
2L	6922947	2L_6922947_SNP [dm3] 2L_6922947_SNP [dm6]	T	A	7.037e^-5	0.886	INTRON Hrb27C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	6845278	3L_6845278_SNP [dm3] 3L_6852178_SNP [dm6]	C	T	7.117e^-5	0.886	INTERGENIC
3R	11997303	3R_11997303_SNP [dm3] 3R_16171581_SNP [dm6]	A	T	7.207e^-5	0.886	UTR_3_PRIME CG6006 UPSTREAM CG8925 DOWNSTREAM CG6006
3R	9649564	3R_9649564_SNP [dm3] 3R_13823842_SNP [dm6]	A	T	7.348e^-5	0.886	INTERGENIC
3R	9649581	3R_9649581_SNP [dm3] 3R_13823859_SNP [dm6]	A	G	7.348e^-5	0.886	INTERGENIC
3R	9649635	3R_9649635_INS [dm3] 3R_13823913_INS [dm6]	T	TAT	7.348e^-5	0.886	INTERGENIC
3R	9649647	3R_9649647_SNP [dm3] 3R_13823925_SNP [dm6]	T	A	7.348e^-5	0.886	INTERGENIC
3L	7223936	3L_7223936_SNP [dm3] 3L_7230836_SNP [dm6]	C	G	7.356e^-5	0.886	INTERGENIC
X	7645086	X_7645086_SNP [dm3] X_7751053_SNP [dm6]	C	T	7.471e^-5	0.886	INTERGENIC
2L	6918381	2L_6918381_SNP [dm3] 2L_6918381_SNP [dm6]	C	T	7.616e^-5	0.886	SYNONYMOUS_CODING nop5 INTRON x16	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	6919790	2L_6919790_SNP [dm3] 2L_6919790_SNP [dm6]	A	G	7.616e^-5	0.886	SYNONYMOUS_CODING x16 UPSTREAM Hrb27C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
X	7639519	X_7639519_INS [dm3] X_7745486_INS [dm6]	T	TGT	7.665e^-5	0.886	INTERGENIC
2L	8761031	2L_8761031_SNP [dm3] 2L_8761031_SNP [dm6]	C	T	7.832e^-5	0.886	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2R	7606861	2R_7606861_SNP [dm3] 2R_11719356_SNP [dm6]	A	G	7.832e^-5	0.886	INTRON pyr
3L	5251787	3L_5251787_SNP [dm3] 3L_5258687_SNP [dm6]	G	A	7.832e^-5	0.886	INTRON shep
3L	562086	3L_562086_SNP [dm3] 3L_562086_SNP [dm6]	T	A	7.832e^-5	0.886	INTRON hipk	TF binding site BDTNP1_TFBS_twi
2L	16812282	2L_16812282_DEL [dm3] 2L_16812282_DEL [dm6]	AA	A	8.159e^-5	0.886	INTRON CG13280 & 1 other
2L	3259261	2L_3259261_SNP [dm3] 2L_3259261_SNP [dm6]	T	A	8.391e^-5	0.886	INTERGENIC
2R	17365967	2R_17365967_SNP [dm3] 2R_21478462_SNP [dm6]	C	A	8.421e^-5	0.886	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7639513	X_7639513_SNP [dm3] X_7745480_SNP [dm6]	T	A	8.489e^-5	0.886	INTERGENIC
3R	6783169	3R_6783169_SNP [dm3] 3R_10957447_SNP [dm6]	A	G	8.558e^-5	0.886	INTERGENIC
2R	4509184	2R_4509184_SNP [dm3] 2R_8621679_SNP [dm6]	C	G	8.629e^-5	0.886	SYNONYMOUS_CODING Cirl	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	13008573	3L_13008573_SNP [dm3] 3L_13015473_SNP [dm6]	T	A	8.689e^-5	0.886	UPSTREAM CG11267 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
X	21173223	X_21173223_SNP [dm3] X_21302196_SNP [dm6]	C	T	8.723e^-5	0.886	INTRON CG1718
2L	8714893	2L_8714893_INS [dm3] 2L_8714893_INS [dm6]	T	TCTGTAG	8.761e^-5	0.886	UPSTREAM raw INTRON raw
2R	6764250	2R_6764250_SNP [dm3] 2R_10876745_SNP [dm6]	A	G	8.875e^-5	0.886	SYNONYMOUS_CODING nclb DOWNSTREAM Taf5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	11133249	2R_11133249_SNP [dm3] 2R_15245744_SNP [dm6]	A	G	9.007e^-5	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4749928	2L_4749928_INS [dm3] 2L_4749928_INS [dm6]	T	TGTGCAT	9.505e^-5	0.886	INTRON CG15630
3R	8405457	3R_8405457_SNP [dm3] 3R_12579735_SNP [dm6]	C	T	9.562e^-5	0.886	INTRON Octbeta2R	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9729186	2L_9729186_SNP [dm3] 2L_9729186_SNP [dm6]	A	G	9.787e^-5	0.886	UPSTREAM CG13116 INTRON Nckx30C
X	4645705	X_4645705_INS [dm3] X_4751672_INS [dm6]	T	TCAGAGCAT	1.004e^-4	0.886	INTERGENIC
2R	9166949	2R_9166949_SNP [dm3] 2R_13279444_SNP [dm6]	T	C	1.013e^-4	0.886	INTRON Dh31-R
2R	17594897	2R_17594897_SNP [dm3] 2R_21707392_SNP [dm6]	C	T	1.019e^-4	0.886	INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8713130	2L_8713130_SNP [dm3] 2L_8713130_SNP [dm6]	A	G	1.020e^-4	0.886	SYNONYMOUS_CODING raw
2L	8713187	2L_8713187_SNP [dm3] 2L_8713187_SNP [dm6]	C	T	1.020e^-4	0.886	SYNONYMOUS_CODING raw
2L	14324707	2L_14324707_SNP [dm3] 2L_14324707_SNP [dm6]	A	T	1.020e^-4	0.886	SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_cad
2L	9042663	2L_9042663_DEL [dm3] 2L_9042663_DEL [dm6]	ATACTTT	A	1.042e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	7640857	X_7640857_SNP [dm3] X_7746824_SNP [dm6]	C	T	1.042e^-4	0.886	INTERGENIC
3R	24037908	3R_24037908_INS [dm3] 3R_28212186_INS [dm6]	A	AAGCTGTCATAATACAAA...	1.052e^-4	0.886	INTRON CG34354	TF binding site mE1_TFBS_chinmo
3R	20260975	3R_20260975_DEL [dm3] 3R_24435253_DEL [dm6]	AAAGTATGCGA...	A	1.052e^-4	0.886	INTRON nAChRalpha1
X	7639508	X_7639508_SNP [dm3] X_7745475_SNP [dm6]	A	G	1.073e^-4	0.886	INTERGENIC
3L	10989733	3L_10989733_SNP [dm3] 3L_10996633_SNP [dm6]	T	A	1.076e^-4	0.886	INTRON klu	TF binding site BDTNP1_TFBS_da
2L	10671508	2L_10671508_SNP [dm3] 2L_10671508_SNP [dm6]	G	T	1.101e^-4	0.886	DOWNSTREAM CG31871 INTERGENIC
2L	5497909	2L_5497909_SNP [dm3] 2L_5497909_SNP [dm6]	A	G	1.102e^-4	0.886	INTERGENIC
2L	5497957	2L_5497957_SNP [dm3] 2L_5497957_SNP [dm6]	C	T	1.102e^-4	0.886	INTERGENIC
3L	17494335	3L_17494335_SNP [dm3] 3L_17501235_SNP [dm6]	A	T	1.111e^-4	0.886	INTRON Oatp74D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7927056	3L_7927056_SNP [dm3] 3L_7933956_SNP [dm6]	A	T	1.116e^-4	0.886	INTRON syd	TF binding site mE1_TFBS_cad
3L	21717839	3L_21717839_SNP [dm3] 3L_21724739_SNP [dm6]	C	T	1.117e^-4	0.886	UTR_3_PRIME CG11247	TF binding site BDTNP1_TFBS_twi
3R	19131266	3R_19131266_SNP [dm3] 3R_23305544_SNP [dm6]	T	C	1.122e^-4	0.886	INTRON pnt
2L	16009621	2L_16009621_SNP [dm3] 2L_16009621_SNP [dm6]	C	T	1.123e^-4	0.886	INTRON beat-Ic
2R	10135841	2R_10135841_SNP [dm3] 2R_14248336_SNP [dm6]	A	G	1.152e^-4	0.886	SYNONYMOUS_CODING Mdr50
2L	4472542	2L_4472542_DEL [dm3] 2L_4472542_DEL [dm6]	ACATTTAACATTTAATGA...	A	1.154e^-4	0.886	INTRON ine
3L	7591556	3L_7591556_SNP [dm3] 3L_7598456_SNP [dm6]	A	G	1.179e^-4	0.886	INTRON CG33275
2L	8712316	2L_8712316_SNP [dm3] 2L_8712316_SNP [dm6]	A	G	1.196e^-4	0.886	INTRON raw
2L	8712319	2L_8712319_SNP [dm3] 2L_8712319_SNP [dm6]	A	G	1.196e^-4	0.886	INTRON raw
X	8716348	X_8716348_SNP [dm3] X_8822315_SNP [dm6]	G	T	1.203e^-4	0.886	INTERGENIC
2R	17078548	2R_17078548_SNP [dm3] 2R_21191043_SNP [dm6]	G	A	1.209e^-4	0.886	SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17079031	2R_17079031_SNP [dm3] 2R_21191526_SNP [dm6]	A	G	1.209e^-4	0.886	SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17079115	2R_17079115_SNP [dm3] 2R_21191610_SNP [dm6]	C	T	1.209e^-4	0.886	SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13008542	3L_13008542_SNP [dm3] 3L_13015442_SNP [dm6]	C	A	1.214e^-4	0.886	UPSTREAM CG11267 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
3L	12038200	3L_12038200_INS [dm3] 3L_12045100_INS [dm6]	T	TGT	1.214e^-4	0.886	UTR_3_PRIME CG43638 DOWNSTREAM CG6793 INTRON rols	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	18226636	2L_18226636_SNP [dm3] 2L_18226636_SNP [dm6]	T	A	1.217e^-4	0.886	INTRON CG42750
3L	3940665	3L_3940665_INS [dm3] 3L_3940665_INS [dm6]	C	CTT	1.218e^-4	0.886	UPSTREAM CG12766 DOWNSTREAM CG10863 EXON CR43916	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	21608860	3R_21608860_SNP [dm3] 3R_25783138_SNP [dm6]	A	C	1.222e^-4	0.886	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	21608870	3R_21608870_DEL [dm3] 3R_25783148_DEL [dm6]	ATGGAA	A	1.222e^-4	0.886	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	493127	3L_493127_SNP [dm3] 3L_493127_SNP [dm6]	C	A	1.223e^-4	0.886	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13718911	3R_13718911_SNP [dm3] 3R_17893189_SNP [dm6]	T	A	1.231e^-4	0.886	INTRON Rim
X	9528820	X_9528820_SNP [dm3] X_9634787_SNP [dm6]	G	A	1.255e^-4	0.886	INTRON l_1_G0232	TF binding site mE1_TFBS_inv
X	9528824	X_9528824_SNP [dm3] X_9634791_SNP [dm6]	T	A	1.255e^-4	0.886	INTRON l_1_G0232	TF binding site mE1_TFBS_inv
3L	6845279	3L_6845279_SNP [dm3] 3L_6852179_SNP [dm6]	C	G	1.297e^-4	0.886	INTERGENIC
2R	17365034	2R_17365034_SNP [dm3] 2R_21477529_SNP [dm6]	A	T	1.302e^-4	0.886	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17365037	2R_17365037_SNP [dm3] 2R_21477532_SNP [dm6]	C	G	1.302e^-4	0.886	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19847307	3R_19847307_SNP [dm3] 3R_24021585_SNP [dm6]	G	A	1.310e^-4	0.886	INTRON KrT95D
3R	23986626	3R_23986626_SNP [dm3] 3R_28160904_SNP [dm6]	C	G	1.316e^-4	0.886	INTRON CG34354
2L	6370158	2L_6370158_SNP [dm3] 2L_6370158_SNP [dm6]	G	T	1.317e^-4	0.886	UTR_3_PRIME CG9505	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13383434	2R_13383434_SNP [dm3] 2R_17495929_SNP [dm6]	C	A	1.321e^-4	0.886	UTR_3_PRIME CG30103	TF binding site mE1_TFBS_cad
2L	6920403	2L_6920403_SNP [dm3] 2L_6920403_SNP [dm6]	C	A	1.323e^-4	0.886	UPSTREAM Hrb27C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	9664412	X_9664412_SNP [dm3] X_9770379_SNP [dm6]	A	G	1.369e^-4	0.886	INTERGENIC
3R	26056024	3R_26056024_SNP [dm3] 3R_30230302_SNP [dm6]	A	C	1.405e^-4	0.886	INTERGENIC
3R	11997501	3R_11997501_SNP [dm3] 3R_16171779_SNP [dm6]	G	A	1.410e^-4	0.886	UPSTREAM CG8925 DOWNSTREAM CG6006 INTERGENIC
2L	775208	2L_775208_SNP [dm3] 2L_775208_SNP [dm6]	C	T	1.439e^-4	0.886	INTERGENIC
3L	11299651	3L_11299651_SNP [dm3] 3L_11306551_SNP [dm6]	T	G	1.475e^-4	0.886	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12689673	2R_12689673_SNP [dm3] 2R_16802168_SNP [dm6]	G	A	1.480e^-4	0.886	INTERGENIC
2L	6922953	2L_6922953_SNP [dm3] 2L_6922953_SNP [dm6]	C	G	1.493e^-4	0.886	INTRON Hrb27C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	4509193	2R_4509193_SNP [dm3] 2R_8621688_SNP [dm6]	G	A	1.504e^-4	0.886	SYNONYMOUS_CODING Cirl	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	24038026	3R_24038026_SNP [dm3] 3R_28212304_SNP [dm6]	C	T	1.513e^-4	0.886	INTRON CG34354	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	4169753	3L_4169753_SNP [dm3] 3L_4169753_SNP [dm6]	A	G	1.514e^-4	0.886	UPSTREAM CR44529 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	3901445	2R_3901445_INS [dm3] 2R_8013940_INS [dm6]	A	AC	1.531e^-4	0.886	UPSTREAM CG14762 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	23974288	3R_23974288_SNP [dm3] 3R_28148566_SNP [dm6]	T	C	1.563e^-4	0.886	INTRON CG34354
3R	23974359	3R_23974359_SNP [dm3] 3R_28148637_SNP [dm6]	A	G	1.563e^-4	0.886	INTRON CG34354
3L	17370881	3L_17370881_INS [dm3] 3L_17377781_INS [dm6]	T	TGT	1.567e^-4	0.886	INTRON Cad74A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	18946583	3L_18946583_SNP [dm3] 3L_18953483_SNP [dm6]	A	G	1.570e^-4	0.886	INTRON CG6836
3L	18946584	3L_18946584_SNP [dm3] 3L_18953484_SNP [dm6]	C	A	1.570e^-4	0.886	INTRON CG6836
3R	24630971	3R_24630971_SNP [dm3] 3R_28805249_SNP [dm6]	C	T	1.576e^-4	0.886	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9375326	2L_9375326_SNP [dm3] 2L_9375326_SNP [dm6]	A	C	1.577e^-4	0.886	INTRON Shawl
3R	19174179	3R_19174179_SNP [dm3] 3R_23348457_SNP [dm6]	A	C	1.578e^-4	0.886	SPLICE_SITE_REGION DNApol-epsilon INTRON DNApol-epsilon	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_sens
2L	2743989	2L_2743989_SNP [dm3] 2L_2743989_SNP [dm6]	G	A	1.580e^-4	0.886	SYNONYMOUS_CODING CG9961 UTR_3_PRIME CG9961 DOWNSTREAM Hrs	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15399792	3R_15399792_SNP [dm3] 3R_19574070_SNP [dm6]	T	A	1.599e^-4	0.886	INTRON Dys
3R	15399951	3R_15399951_SNP [dm3] 3R_19574229_SNP [dm6]	C	G	1.599e^-4	0.886	INTRON Dys
2R	6812764	2R_6812764_SNP [dm3] 2R_10925259_SNP [dm6]	A	G	1.603e^-4	0.886	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	11397185	3R_11397185_SNP [dm3] 3R_15571463_SNP [dm6]	G	A	1.608e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14149139	2R_14149139_SNP [dm3] 2R_18261634_SNP [dm6]	T	A	1.612e^-4	0.886	INTERGENIC
3L	13884336	3L_13884336_SNP [dm3] 3L_13891236_SNP [dm6]	G	A	1.612e^-4	0.886	INTRON dysc	TF binding site BDTNP1_TFBS_ftz
3L	12006482	3L_12006482_SNP [dm3] 3L_12013382_SNP [dm6]	T	C	1.613e^-4	0.886	SYNONYMOUS_CODING rols	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18304481	2L_18304481_SNP [dm3] 2L_18304481_SNP [dm6]	G	A	1.644e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	9602675	3L_9602675_SNP [dm3] 3L_9609575_SNP [dm6]	T	C	1.649e^-4	0.886	SYNONYMOUS_CODING CG3280
3R	14785668	3R_14785668_SNP [dm3] 3R_18959946_SNP [dm6]	G	T	1.657e^-4	0.886	INTRON CG42613 & 1 other
3L	2493653	3L_2493653_SNP [dm3] 3L_2493653_SNP [dm6]	T	G	1.659e^-4	0.886	UPSTREAM CG45186 INTRON CG45186
3L	2493654	3L_2493654_SNP [dm3] 3L_2493654_SNP [dm6]	G	T	1.659e^-4	0.886	UPSTREAM CG45186 INTRON CG45186
2L	22001622	2L_22001622_SNP [dm3] 2L_22001622_SNP [dm6]	G	T	1.724e^-4	0.886	INTERGENIC
2L	6919730	2L_6919730_SNP [dm3] 2L_6919730_SNP [dm6]	C	T	1.734e^-4	0.886	SYNONYMOUS_CODING x16 UPSTREAM nop5 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	5442481	3L_5442481_SNP [dm3] 3L_5449381_SNP [dm6]	T	A	1.738e^-4	0.886	INTERGENIC
3R	23086494	3R_23086494_SNP [dm3] 3R_27260772_SNP [dm6]	T	C	1.769e^-4	0.886	SYNONYMOUS_CODING woc UPSTREAM woc EXON CR44049	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16007069	2R_16007069_SNP [dm3] 2R_20119564_SNP [dm6]	T	C	1.787e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25399200	3R_25399200_SNP [dm3] 3R_29573478_SNP [dm6]	A	T	1.810e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9528446	X_9528446_INS [dm3] X_9634413_INS [dm6]	C	CACC	1.817e^-4	0.886	INTRON l_1_G0232
2L	4749980	2L_4749980_SNP [dm3] 2L_4749980_SNP [dm6]	A	C	1.821e^-4	0.886	INTRON CG15630
3L	3266982	3L_3266982_SNP [dm3] 3L_3266982_SNP [dm6]	G	C	1.833e^-4	0.886	INTRON ckd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	17365920	2R_17365920_SNP [dm3] 2R_21478415_SNP [dm6]	C	A	1.841e^-4	0.886	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18370023	2L_18370023_SNP [dm3] 2L_18370023_SNP [dm6]	C	T	1.859e^-4	0.886	INTRON Fas3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13781747	3L_13781747_SNP [dm3] 3L_13788647_SNP [dm6]	C	T	1.873e^-4	0.886	INTRON bru-3
2L	12853909	2L_12853909_SNP [dm3] 2L_12853909_SNP [dm6]	G	A	1.885e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20107504	2R_20107504_SNP [dm3] 2R_24219981_SNP [dm6]	A	G	1.888e^-4	0.886	INTRON CG30419
3R	27189481	3R_27189481_SNP [dm3] 3R_31363759_SNP [dm6]	A	C	1.889e^-4	0.886	INTRON CG34347
X	13481649	X_13481649_SNP [dm3] X_13587616_SNP [dm6]	G	A	1.890e^-4	0.886	INTRON Tango13
3L	16975630	3L_16975630_SNP [dm3] 3L_16982530_SNP [dm6]	T	A	1.891e^-4	0.886	NON_SYNONYMOUS_CODING Exn	TF binding site mE1_TFBS_cad
3L	4173285	3L_4173285_SNP [dm3] 3L_4173285_SNP [dm6]	T	A	1.898e^-4	0.886	UPSTREAM CG18675 INTRON Ero1L
3R	23986613	3R_23986613_SNP [dm3] 3R_28160891_SNP [dm6]	G	C	1.900e^-4	0.886	INTRON CG34354
3R	24037836	3R_24037836_SNP [dm3] 3R_28212114_SNP [dm6]	C	A	1.908e^-4	0.886	INTRON CG34354	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	24037837	3R_24037837_SNP [dm3] 3R_28212115_SNP [dm6]	T	C	1.908e^-4	0.886	INTRON CG34354	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	24037854	3R_24037854_SNP [dm3] 3R_28212132_SNP [dm6]	T	C	1.908e^-4	0.886	INTRON CG34354	TF binding site BDTNP1_TFBS_twi
3R	24037864	3R_24037864_SNP [dm3] 3R_28212142_SNP [dm6]	A	G	1.908e^-4	0.886	INTRON CG34354	TF binding site BDTNP1_TFBS_twi
3R	25283779	3R_25283779_DEL [dm3] 3R_29458057_DEL [dm6]	TT	T	1.908e^-4	0.886	DOWNSTREAM CR44022 INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	20260972	3R_20260972_SNP [dm3] 3R_24435250_SNP [dm6]	C	A	1.919e^-4	0.886	INTRON nAChRalpha1
3R	20260997	3R_20260997_SNP [dm3] 3R_24435275_SNP [dm6]	G	C	1.919e^-4	0.886	INTRON nAChRalpha1
3R	11861031	3R_11861031_SNP [dm3] 3R_16035309_SNP [dm6]	T	G	1.921e^-4	0.886	INTRON pnr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	3940049	3L_3940049_SNP [dm3] 3L_3940049_SNP [dm6]	G	A	1.926e^-4	0.886	SYNONYMOUS_CODING CG12766 UPSTREAM CR43916 DOWNSTREAM CG10863
3R	11997511	3R_11997511_DEL [dm3] 3R_16171789_DEL [dm6]	AGA	A	1.946e^-4	0.886	UPSTREAM CG8925 DOWNSTREAM CG6006 INTERGENIC
2L	3829879	2L_3829879_SNP [dm3] 2L_3829879_SNP [dm6]	G	T	1.954e^-4	0.886	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1936848	3R_1936848_SNP [dm3] 3R_6111126_SNP [dm6]	G	A	1.972e^-4	0.886	UPSTREAM Obp83ef DOWNSTREAM Obp83g INTERGENIC	regulatory region REDfly_CRMs
2L	8712340	2L_8712340_INS [dm3] 2L_8712340_INS [dm6]	G	GAC	2.023e^-4	0.886	INTRON raw
2L	8712348	2L_8712348_SNP [dm3] 2L_8712348_SNP [dm6]	G	A	2.023e^-4	0.886	INTRON raw
2L	8712373	2L_8712373_INS [dm3] 2L_8712373_INS [dm6]	A	ATGATTCTTCACA...	2.023e^-4	0.886	INTRON raw
3R	13714857	3R_13714857_SNP [dm3] 3R_17889135_SNP [dm6]	C	T	2.025e^-4	0.886	INTRON Rim
2R	9939093	2R_9939093_SNP [dm3] 2R_14051588_SNP [dm6]	T	A	2.046e^-4	0.886	INTRON mam
X	21037341	X_21037341_SNP [dm3] X_21166314_SNP [dm6]	G	A	2.063e^-4	0.886	INTERGENIC
3L	22040532	3L_22040532_SNP [dm3] 3L_22047432_SNP [dm6]	T	A	2.065e^-4	0.886	INTRON Oct-TyrR
3L	22040534	3L_22040534_DEL [dm3] 3L_22047434_DEL [dm6]	TTT	T	2.065e^-4	0.886	INTRON Oct-TyrR
2R	13401510	2R_13401510_SNP [dm3] 2R_17514005_SNP [dm6]	T	G	2.072e^-4	0.886	UPSTREAM CG4853 DOWNSTREAM CG4847 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_h mE1_TFBS_HSA
2L	14500659	2L_14500659_SNP [dm3] 2L_14500659_SNP [dm6]	T	G	2.072e^-4	0.886	INTERGENIC
2L	8492854	2L_8492854_SNP [dm3] 2L_8492854_SNP [dm6]	C	A	2.087e^-4	0.886	INTRON Dh31
2R	13383307	2R_13383307_SNP [dm3] 2R_17495802_SNP [dm6]	C	T	2.109e^-4	0.886	SYNONYMOUS_CODING CG30103	TF binding site mE1_TFBS_cad
2R	18859702	2R_18859702_SNP [dm3] 2R_22972179_SNP [dm6]	C	T	2.125e^-4	0.886	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	3256609	3L_3256609_SNP [dm3] 3L_3256609_SNP [dm6]	G	A	2.127e^-4	0.886	INTERGENIC
2R	1250780	2R_1250780_SNP [dm3] 2R_5363275_SNP [dm6]	T	C	2.129e^-4	0.886	UPSTREAM CG10417 EXON CR42646	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	20225397	3R_20225397_SNP [dm3] 3R_24399675_SNP [dm6]	T	A	2.137e^-4	0.886	UTR_3_PRIME nAChRalpha1	TF binding site mE1_TFBS_run
3L	10061542	3L_10061542_INS [dm3] 3L_10068442_INS [dm6]	A	ACAAAA	2.141e^-4	0.886	INTRON dpr6
3L	3052578	3L_3052578_SNP [dm3] 3L_3052578_SNP [dm6]	T	A	2.164e^-4	0.886	UTR_5_PRIME CG1271 UPSTREAM CG1271 DOWNSTREAM CG32485	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11299648	3L_11299648_SNP [dm3] 3L_11306548_SNP [dm6]	T	C	2.184e^-4	0.886	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6923057	2L_6923057_SNP [dm3] 2L_6923057_SNP [dm6]	T	A	2.214e^-4	0.886	INTRON Hrb27C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5335270	2L_5335270_SNP [dm3] 2L_5335270_SNP [dm6]	T	G	2.221e^-4	0.886	INTRON fusl
3L	4439555	3L_4439555_SNP [dm3] 3L_4439555_SNP [dm6]	A	G	2.226e^-4	0.886	INTERGENIC
2L	18416784	2L_18416784_SNP [dm3] 2L_18416784_SNP [dm6]	G	C	2.247e^-4	0.886	INTERGENIC
3L	11400050	3L_11400050_INS [dm3] 3L_11406950_INS [dm6]	C	CC	2.252e^-4	0.886	DOWNSTREAM CR44363 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	15290264	3R_15290264_DEL [dm3] 3R_19464542_DEL [dm6]	AA	A	2.252e^-4	0.886	UTR_5_PRIME Dys INTRON Dys	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	18986861	2R_18986861_SNP [dm3] 2R_23099338_SNP [dm6]	C	A	2.260e^-4	0.886	DOWNSTREAM RpL37b INTERGENIC
3L	9012071	3L_9012071_SNP [dm3] 3L_9018971_SNP [dm6]	C	G	2.271e^-4	0.886	UTR_5_PRIME Doc2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13745579	3R_13745579_SNP [dm3] 3R_17919857_SNP [dm6]	G	A	2.286e^-4	0.886	UTR_5_PRIME cpo	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	17660007	3R_17660007_SNP [dm3] 3R_21834285_SNP [dm6]	C	A	2.297e^-4	0.886	DOWNSTREAM Gr93a INTERGENIC
2R	16640072	2R_16640072_SNP [dm3] 2R_20752567_SNP [dm6]	C	A	2.354e^-4	0.886	UPSTREAM CG34202 DOWNSTREAM CG34201 INTERGENIC
3L	11134120	3L_11134120_SNP [dm3] 3L_11141020_SNP [dm6]	C	T	2.369e^-4	0.886	INTRON CG32082
3R	24037881	3R_24037881_SNP [dm3] 3R_28212159_SNP [dm6]	T	C	2.377e^-4	0.886	INTRON CG34354	TF binding site BDTNP1_TFBS_twi
3R	24418246	3R_24418246_SNP [dm3] 3R_28592524_SNP [dm6]	T	A	2.406e^-4	0.886	UPSTREAM CR43440 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cnc
2L	8492858	2L_8492858_SNP [dm3] 2L_8492858_SNP [dm6]	A	G	2.427e^-4	0.886	INTRON Dh31
3R	26978876	3R_26978876_SNP [dm3] 3R_31153154_SNP [dm6]	T	C	2.440e^-4	0.886	SYNONYMOUS_CODING Gycbeta100B
3L	12334191	3L_12334191_SNP [dm3] 3L_12341091_SNP [dm6]	G	A	2.443e^-4	0.886	INTRON CrzR
3L	3256606	3L_3256606_SNP [dm3] 3L_3256606_SNP [dm6]	A	G	2.463e^-4	0.886	INTERGENIC
2L	12854893	2L_12854893_SNP [dm3] 2L_12854893_SNP [dm6]	A	G	2.470e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7285350	3L_7285350_SNP [dm3] 3L_7292250_SNP [dm6]	T	C	2.472e^-4	0.886	INTRON unc-13-4A
3L	7285381	3L_7285381_SNP [dm3] 3L_7292281_SNP [dm6]	G	A	2.472e^-4	0.886	INTRON unc-13-4A
2L	12513242	2L_12513242_SNP [dm3] 2L_12513242_SNP [dm6]	A	C	2.503e^-4	0.886	INTRON bun	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9322965	2R_9322965_SNP [dm3] 2R_13435460_SNP [dm6]	G	A	2.506e^-4	0.886	DOWNSTREAM Ser8 INTRON CG42321	TF binding site mE1_TFBS_chinmo
3R	15340465	3R_15340465_SNP [dm3] 3R_19514743_SNP [dm6]	C	G	2.510e^-4	0.886	INTRON Dys
3L	11187410	3L_11187410_SNP [dm3] 3L_11194310_SNP [dm6]	G	T	2.511e^-4	0.886	INTRON GlcAT-P
3R	20564229	3R_20564229_SNP [dm3] 3R_24738507_SNP [dm6]	T	G	2.512e^-4	0.886	INTRON tok
3R	13733892	3R_13733892_SNP [dm3] 3R_17908170_SNP [dm6]	C	A	2.517e^-4	0.886	SYNONYMOUS_CODING Rim DOWNSTREAM CG12347
3R	7464677	3R_7464677_SNP [dm3] 3R_11638955_SNP [dm6]	C	T	2.525e^-4	0.886	DOWNSTREAM CR44137 INTRON Csk
3R	26269564	3R_26269564_SNP [dm3] 3R_30443842_SNP [dm6]	A	G	2.525e^-4	0.886	UPSTREAM CG15537 DOWNSTREAM Osi23 INTERGENIC
3R	26241738	3R_26241738_SNP [dm3] 3R_30416016_SNP [dm6]	T	G	2.534e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	11133333	2R_11133333_SNP [dm3] 2R_15245828_SNP [dm6]	C	T	2.536e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23245843	3R_23245843_SNP [dm3] 3R_27420121_SNP [dm6]	T	A	2.554e^-4	0.886	INTRON side
3R	13714873	3R_13714873_SNP [dm3] 3R_17889151_SNP [dm6]	A	G	2.565e^-4	0.886	INTRON Rim
2L	9729187	2L_9729187_SNP [dm3] 2L_9729187_SNP [dm6]	T	C	2.568e^-4	0.886	UPSTREAM CG13116 INTRON Nckx30C
2L	8712325	2L_8712325_DEL [dm3] 2L_8712325_DEL [dm6]	TTAGTT	T	2.585e^-4	0.886	INTRON raw
3L	10069446	3L_10069446_SNP [dm3] 3L_10076346_SNP [dm6]	G	A	2.619e^-4	0.886	INTRON dpr6
3L	9319161	3L_9319161_SNP [dm3] 3L_9326061_SNP [dm6]	T	G	2.619e^-4	0.886	INTERGENIC
3L	17125380	3L_17125380_SNP [dm3] 3L_17132280_SNP [dm6]	G	A	2.623e^-4	0.886	INTRON Rbp6
3L	2884587	3L_2884587_SNP [dm3] 3L_2884587_SNP [dm6]	C	T	2.637e^-4	0.886	INTRON spz5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	9995991	2L_9995991_SNP [dm3] 2L_9995991_SNP [dm6]	T	G	2.646e^-4	0.886	UTR_3_PRIME CG31875 DOWNSTREAM bib & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	6922956	2L_6922956_SNP [dm3] 2L_6922956_SNP [dm6]	T	A	2.648e^-4	0.886	INTRON Hrb27C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	6922987	2L_6922987_SNP [dm3] 2L_6922987_SNP [dm6]	T	C	2.648e^-4	0.886	INTRON Hrb27C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	6923106	2L_6923106_INS [dm3] 2L_6923106_INS [dm6]	A	AT	2.648e^-4	0.886	INTRON Hrb27C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6923108	2L_6923108_SNP [dm3] 2L_6923108_SNP [dm6]	A	G	2.648e^-4	0.886	INTRON Hrb27C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6923109	2L_6923109_DEL [dm3] 2L_6923109_DEL [dm6]	TAC	T	2.648e^-4	0.886	INTRON Hrb27C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12053917	2R_12053917_SNP [dm3] 2R_16166412_SNP [dm6]	T	C	2.650e^-4	0.886	SYNONYMOUS_CODING lbk	TF binding site mE1_TFBS_cad
3L	15050885	3L_15050885_SNP [dm3] 3L_15057785_SNP [dm6]	T	C	2.659e^-4	0.886	INTRON Sytbeta
3R	15290312	3R_15290312_SNP [dm3] 3R_19464590_SNP [dm6]	A	G	2.680e^-4	0.886	UTR_5_PRIME Dys INTRON Dys	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	18455977	2R_18455977_SNP [dm3] 2R_22568472_SNP [dm6]	G	A	2.711e^-4	0.886	INTRON dnr1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	18985023	2R_18985023_SNP [dm3] 2R_23097500_SNP [dm6]	C	A	2.711e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3L	3720483	3L_3720483_SNP [dm3] 3L_3720483_SNP [dm6]	T	C	2.711e^-4	0.886	INTRON CG32264
3L	7631432	3L_7631432_SNP [dm3] 3L_7638332_SNP [dm6]	G	A	2.711e^-4	0.886	SYNONYMOUS_CODING CG33275
3L	7631453	3L_7631453_SNP [dm3] 3L_7638353_SNP [dm6]	A	T	2.711e^-4	0.886	SYNONYMOUS_CODING CG33275
3L	7631465	3L_7631465_SNP [dm3] 3L_7638365_SNP [dm6]	C	T	2.711e^-4	0.886	SYNONYMOUS_CODING CG33275
3L	8407871	3L_8407871_SNP [dm3] 3L_8414771_SNP [dm6]	G	A	2.711e^-4	0.886	SYNONYMOUS_CODING Exo70 DOWNSTREAM mtrm	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9414112	3L_9414112_SNP [dm3] 3L_9421012_SNP [dm6]	C	G	2.711e^-4	0.886	UPSTREAM CG3967 INTRON CG3967	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9415340	3L_9415340_SNP [dm3] 3L_9422240_SNP [dm6]	A	T	2.711e^-4	0.886	INTRON CG3967	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13766260	3R_13766260_SNP [dm3] 3R_17940538_SNP [dm6]	C	G	2.711e^-4	0.886	INTRON cpo	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	13766304	3R_13766304_SNP [dm3] 3R_17940582_SNP [dm6]	C	G	2.711e^-4	0.886	INTRON cpo	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	19222707	3R_19222707_DEL [dm3] 3R_23396985_DEL [dm6]	CTTCAACACGGGCGGCGCCG...	C	2.711e^-4	0.886	INTERGENIC
3R	21482306	3R_21482306_SNP [dm3] 3R_25656584_SNP [dm6]	C	T	2.711e^-4	0.886	SYNONYMOUS_CODING Tnks	TF binding site mE1_TFBS_sens
3R	26569145	3R_26569145_SNP [dm3] 3R_30743423_SNP [dm6]	C	T	2.711e^-4	0.886	SYNONYMOUS_CODING CG15543	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13138840	X_13138840_SNP [dm3] X_13244807_SNP [dm6]	G	A	2.711e^-4	0.886	INTRON mew	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	22033428	3L_22033428_DEL [dm3] 3L_22040328_DEL [dm6]	TAAATCGTTT	T	2.734e^-4	0.886	INTRON Oct-TyrR
2R	6764406	2R_6764406_SNP [dm3] 2R_10876901_SNP [dm6]	T	G	2.736e^-4	0.886	SYNONYMOUS_CODING nclb DOWNSTREAM Taf5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	6764412	2R_6764412_SNP [dm3] 2R_10876907_SNP [dm6]	A	C	2.736e^-4	0.886	SYNONYMOUS_CODING nclb DOWNSTREAM Taf5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	6764416	2R_6764416_SNP [dm3] 2R_10876911_SNP [dm6]	C	T	2.736e^-4	0.886	SYNONYMOUS_CODING nclb DOWNSTREAM Taf5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	8405408	3R_8405408_DEL [dm3] 3R_12579686_DEL [dm6]	CACCAACCCACTTCGCCCAG...	C	2.736e^-4	0.886	INTRON Octbeta2R	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6681785	3L_6681785_SNP [dm3] 3L_6688685_SNP [dm6]	T	C	2.738e^-4	0.886	DOWNSTREAM SP1173 INTERGENIC
X	4596957	X_4596957_SNP [dm3] X_4702924_SNP [dm6]	C	T	2.753e^-4	0.886	DOWNSTREAM ctp INTRON l_1_G0334	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18487216	3R_18487216_SNP [dm3] 3R_22661494_SNP [dm6]	C	G	2.757e^-4	0.886	INTRON CG45058
3L	4753376	3L_4753376_SNP [dm3] 3L_4753376_SNP [dm6]	A	G	2.757e^-4	0.886	UTR_5_PRIME RhoGEF64C INTRON RhoGEF64C & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2014185	3R_2014185_SNP [dm3] 3R_6188463_SNP [dm6]	T	C	2.758e^-4	0.886	INTRON NPFR
3L	2463548	3L_2463548_SNP [dm3] 3L_2463548_SNP [dm6]	A	C	2.761e^-4	0.886	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3696480	2L_3696480_SNP [dm3] 2L_3696480_SNP [dm6]	T	A	2.762e^-4	0.886	DOWNSTREAM CG3604 INTRON CG16712
3L	8861900	3L_8861900_SNP [dm3] 3L_8868800_SNP [dm6]	A	G	2.800e^-4	0.886	INTRON dally
3R	14870797	3R_14870797_SNP [dm3] 3R_19045075_SNP [dm6]	A	G	2.802e^-4	0.886	UTR_3_PRIME cdi DOWNSTREAM cdi & 1 other	TF binding site mE1_TFBS_zfh1
2L	8050770	2L_8050770_SNP [dm3] 2L_8050770_SNP [dm6]	T	C	2.813e^-4	0.886	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23887978	3R_23887978_SNP [dm3] 3R_28062256_SNP [dm6]	A	C	2.813e^-4	0.886	INTRON CG34362
3L	18071764	3L_18071764_SNP [dm3] 3L_18078664_SNP [dm6]	T	C	2.815e^-4	0.886	DOWNSTREAM CR45392 INTERGENIC
2L	5335031	2L_5335031_SNP [dm3] 2L_5335031_SNP [dm6]	T	C	2.843e^-4	0.886	INTRON fusl
2L	4813435	2L_4813435_SNP [dm3] 2L_4813435_SNP [dm6]	A	G	2.860e^-4	0.886	NON_SYNONYMOUS_CODING CG15629
3R	26998702	3R_26998702_SNP [dm3] 3R_31172980_SNP [dm6]	T	C	2.861e^-4	0.886	INTRON Gycbeta100B
2R	17588479	2R_17588479_SNP [dm3] 2R_21700974_SNP [dm6]	A	T	2.875e^-4	0.886	UPSTREAM HmgD INTRON HmgZ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	18281212	2L_18281212_SNP [dm3] 2L_18281212_SNP [dm6]	G	A	2.909e^-4	0.886	INTERGENIC
3L	9415232	3L_9415232_SNP [dm3] 3L_9422132_SNP [dm6]	T	A	2.917e^-4	0.886	INTRON CG3967	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3R	2010693	3R_2010693_SNP [dm3] 3R_6184971_SNP [dm6]	A	T	2.926e^-4	0.886	EXON CR31562
2L	5310332	2L_5310332_SNP [dm3] 2L_5310332_SNP [dm6]	A	T	2.936e^-4	0.886	UTR_3_PRIME vri DOWNSTREAM CG14024
2R	13481591	2R_13481591_SNP [dm3] 2R_17594086_SNP [dm6]	C	A	2.937e^-4	0.886	INTRON lack	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	11640217	2L_11640217_SNP [dm3] 2L_11640217_SNP [dm6]	T	A	2.940e^-4	0.886	INTERGENIC
X	9218500	X_9218500_SNP [dm3] X_9324467_SNP [dm6]	C	G	2.973e^-4	0.886	DOWNSTREAM CG34449 & 1 other INTERGENIC
3R	11134972	3R_11134972_SNP [dm3] 3R_15309250_SNP [dm6]	G	T	2.977e^-4	0.886	UPSTREAM Tm2 DOWNSTREAM Tm1 INTERGENIC
3L	10042078	3L_10042078_SNP [dm3] 3L_10048978_SNP [dm6]	G	A	2.980e^-4	0.886	INTRON dpr6
2R	13169803	2R_13169803_SNP [dm3] 2R_17282298_SNP [dm6]	G	A	2.986e^-4	0.886	INTRON mbl
3R	26878469	3R_26878469_INS [dm3] 3R_31052747_INS [dm6]	A	AA	2.989e^-4	0.886	UTR_3_PRIME l_3_03670 DOWNSTREAM Aph-4	TF binding site mE1_TFBS_sbb
2L	8712366	2L_8712366_SNP [dm3] 2L_8712366_SNP [dm6]	C	T	2.992e^-4	0.886	INTRON raw
2L	16872000	2L_16872000_SNP [dm3] 2L_16872000_SNP [dm6]	G	C	3.004e^-4	0.886	INTRON CR31781
3R	27212910	3R_27212910_SNP [dm3] 3R_31387188_SNP [dm6]	C	T	3.008e^-4	0.886	SYNONYMOUS_CODING CG1607	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
X	7639447	X_7639447_SNP [dm3] X_7745414_SNP [dm6]	A	C	3.009e^-4	0.886	INTERGENIC
3L	22109220	3L_22109220_SNP [dm3] 3L_22116120_SNP [dm6]	A	G	3.021e^-4	0.886	INTERGENIC
3R	13550893	3R_13550893_SNP [dm3] 3R_17725171_SNP [dm6]	C	T	3.023e^-4	0.886	UPSTREAM Lgr1 & 1 other INTERGENIC
3R	13550930	3R_13550930_INS [dm3] 3R_17725208_INS [dm6]	T	TGTAGTAAAGCACCT...	3.023e^-4	0.886	UPSTREAM Lgr1 & 1 other INTERGENIC
X	16094375	X_16094375_INS [dm3] X_16200342_INS [dm6]	C	CC	3.024e^-4	0.886	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	9217064	3R_9217064_SNP [dm3] 3R_13391342_SNP [dm6]	G	C	3.025e^-4	0.886	INTRON CCHa2
3R	22128296	3R_22128296_SNP [dm3] 3R_26302574_SNP [dm6]	A	G	3.035e^-4	0.886	INTERGENIC
3L	15762880	3L_15762880_SNP [dm3] 3L_15769780_SNP [dm6]	G	C	3.046e^-4	0.886	INTERGENIC
2R	17920659	2R_17920659_SNP [dm3] 2R_22033154_SNP [dm6]	C	G	3.057e^-4	0.886	INTRON CG34370
3R	15465526	3R_15465526_SNP [dm3] 3R_19639804_SNP [dm6]	T	C	3.065e^-4	0.886	INTRON subdued
3R	13803252	3R_13803252_SNP [dm3] 3R_17977530_SNP [dm6]	C	T	3.069e^-4	0.886	INTRON cpo
2R	9940909	2R_9940909_SNP [dm3] 2R_14053404_SNP [dm6]	G	C	3.080e^-4	0.886	INTRON mam
3L	9993399	3L_9993399_INS [dm3] 3L_10000299_INS [dm6]	G	GTG	3.089e^-4	0.886	INTRON dpr6
3R	10918287	3R_10918287_SNP [dm3] 3R_15092565_SNP [dm6]	C	T	3.092e^-4	0.886	INTRON CG6966	TF binding site BDTNP1_TFBS_dl
3R	23986529	3R_23986529_DEL [dm3] 3R_28160807_DEL [dm6]	GA	G	3.104e^-4	0.886	INTRON CG34354
X	3099116	X_3099116_SNP [dm3] X_3205083_SNP [dm6]	C	T	3.137e^-4	0.886	INTRON dnc	TF binding site mE1_TFBS_inv
3R	13024585	3R_13024585_SNP [dm3] 3R_17198863_SNP [dm6]	T	A	3.145e^-4	0.886	INTRON Mur89F
3L	9204530	3L_9204530_SNP [dm3] 3L_9211430_SNP [dm6]	A	T	3.148e^-4	0.886	UPSTREAM CG4476 INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3L	9413387	3L_9413387_SNP [dm3] 3L_9420287_SNP [dm6]	G	C	3.149e^-4	0.886	UPSTREAM CG3967 INTRON CG3967
2R	16281333	2R_16281333_SNP [dm3] 2R_20393828_SNP [dm6]	G	A	3.162e^-4	0.886	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18416816	2L_18416816_SNP [dm3] 2L_18416816_SNP [dm6]	C	T	3.170e^-4	0.886	INTERGENIC
2L	12804469	2L_12804469_SNP [dm3] 2L_12804469_SNP [dm6]	G	T	3.171e^-4	0.886	INTERGENIC
3R	26568864	3R_26568864_SNP [dm3] 3R_30743142_SNP [dm6]	T	G	3.182e^-4	0.886	NON_SYNONYMOUS_CODING CG15543
3R	26568990	3R_26568990_SNP [dm3] 3R_30743268_SNP [dm6]	C	A	3.182e^-4	0.886	NON_SYNONYMOUS_CODING CG15543	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16027794	3R_16027794_SNP [dm3] 3R_20202072_SNP [dm6]	G	A	3.184e^-4	0.886	INTERGENIC
3L	2476484	3L_2476484_SNP [dm3] 3L_2476484_SNP [dm6]	C	T	3.186e^-4	0.886	SYNONYMOUS_CODING Cyp4d20 UPSTREAM CG16762 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2476490	3L_2476490_SNP [dm3] 3L_2476490_SNP [dm6]	T	C	3.186e^-4	0.886	SYNONYMOUS_CODING Cyp4d20 UPSTREAM CG16762 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	21176627	X_21176627_SNP [dm3] X_21305600_SNP [dm6]	G	A	3.187e^-4	0.886	START_GAINED CG1718 UTR_5_PRIME CG1718 DOWNSTREAM tRNA:CR32525
3L	7416460	3L_7416460_SNP [dm3] 3L_7423360_SNP [dm6]	C	A	3.190e^-4	0.886	UPSTREAM CG42458 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	21157504	X_21157504_SNP [dm3] X_21286477_SNP [dm6]	T	G	3.196e^-4	0.886	INTRON CG1494
3R	22895928	3R_22895928_SNP [dm3] 3R_27070206_SNP [dm6]	C	A	3.210e^-4	0.886	UPSTREAM spz INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26640096	3R_26640096_SNP [dm3] 3R_30814374_SNP [dm6]	C	T	3.214e^-4	0.886	INTRON cindr	TF binding site BDTNP1_TFBS_twi
2R	9940314	2R_9940314_SNP [dm3] 2R_14052809_SNP [dm6]	C	G	3.223e^-4	0.886	INTRON mam
3R	15325806	3R_15325806_SNP [dm3] 3R_19500084_SNP [dm6]	G	A	3.223e^-4	0.886	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15325833	3R_15325833_INS [dm3] 3R_19500111_INS [dm6]	A	GTACGG	3.223e^-4	0.886	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	8491251	3R_8491251_SNP [dm3] 3R_12665529_SNP [dm6]	A	T	3.230e^-4	0.886	INTRON CG14395
3L	6537557	3L_6537557_SNP [dm3] 3L_6544457_SNP [dm6]	T	C	3.232e^-4	0.886	INTRON sfl
3R	14807954	3R_14807954_SNP [dm3] 3R_18982232_SNP [dm6]	A	G	3.232e^-4	0.886	SYNONYMOUS_CODING dnk UPSTREAM Smu1 DOWNSTREAM snRNP-U1-C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	8503901	3R_8503901_SNP [dm3] 3R_12678179_SNP [dm6]	C	T	3.232e^-4	0.886	NON_SYNONYMOUS_CODING mbo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11289039	3L_11289039_SNP [dm3] 3L_11295939_SNP [dm6]	C	T	3.240e^-4	0.886	UPSTREAM CG6175 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	3483328	3L_3483328_SNP [dm3] 3L_3483328_SNP [dm6]	A	G	3.248e^-4	0.886	DOWNSTREAM CG43074 INTRON CG42324
X	7637465	X_7637465_SNP [dm3] X_7743432_SNP [dm6]	T	A	3.264e^-4	0.886	INTERGENIC
X	7637694	X_7637694_SNP [dm3] X_7743661_SNP [dm6]	C	A	3.264e^-4	0.886	INTERGENIC
3R	25430471	3R_25430471_SNP [dm3] 3R_29604749_SNP [dm6]	T	C	3.300e^-4	0.886	INTRON alph
3L	3053105	3L_3053105_SNP [dm3] 3L_3053105_SNP [dm6]	A	T	3.317e^-4	0.886	INTRON CG1271	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	26388426	3R_26388426_SNP [dm3] 3R_30562704_SNP [dm6]	T	A	3.332e^-4	0.886	UPSTREAM tmod INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	21859222	3L_21859222_SNP [dm3] 3L_21866122_SNP [dm6]	T	A	3.341e^-4	0.886	INTRON mub
2L	16509165	2L_16509165_SNP [dm3] 2L_16509165_SNP [dm6]	T	G	3.347e^-4	0.886	UTR_3_PRIME CG5953
3L	16547566	3L_16547566_SNP [dm3] 3L_16554466_SNP [dm6]	C	T	3.359e^-4	0.886	INTERGENIC
2L	12854135	2L_12854135_SNP [dm3] 2L_12854135_SNP [dm6]	A	G	3.389e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10042031	3L_10042031_SNP [dm3] 3L_10048931_SNP [dm6]	C	A	3.423e^-4	0.886	INTRON dpr6
3L	7394856	3L_7394856_DEL [dm3] 3L_7401756_DEL [dm6]	GATATGTTTTC...	G	3.429e^-4	0.886	DOWNSTREAM CG8560 & 1 other INTERGENIC
2L	6922844	2L_6922844_INS [dm3] 2L_6922844_INS [dm6]	A	AA	3.434e^-4	0.886	INTRON Hrb27C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	26567785	3R_26567785_SNP [dm3] 3R_30742063_SNP [dm6]	G	C	3.443e^-4	0.886	UPSTREAM CG15543 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	19552455	2R_19552455_SNP [dm3] 2R_23664932_SNP [dm6]	T	C	3.464e^-4	0.886	INTRON Pde8
X	21157500	X_21157500_MNP [dm3] X_21286473_MNP [dm6]	CAT	GTA	3.465e^-4	0.886	INTRON CG1494
3R	19346063	3R_19346063_SNP [dm3] 3R_23520341_SNP [dm6]	G	T	3.469e^-4	0.886	NON_SYNONYMOUS_CODING CG10177 UPSTREAM Irk2	TF binding site mE1_TFBS_cad
3R	11134857	3R_11134857_SNP [dm3] 3R_15309135_SNP [dm6]	G	A	3.475e^-4	0.886	DOWNSTREAM Tm1 INTERGENIC
3R	11134874	3R_11134874_SNP [dm3] 3R_15309152_SNP [dm6]	G	A	3.475e^-4	0.886	DOWNSTREAM Tm1 INTERGENIC
2L	6828146	2L_6828146_SNP [dm3] 2L_6828146_SNP [dm6]	T	C	3.488e^-4	0.886	INTRON sens-2	TF binding site mE1_TFBS_cad
3L	15871725	3L_15871725_SNP [dm3] 3L_15878625_SNP [dm6]	C	A	3.530e^-4	0.886	INTRON pHCl
X	9193360	X_9193360_SNP [dm3] X_9299327_SNP [dm6]	G	T	3.550e^-4	0.886	INTRON lz
3L	10564191	3L_10564191_SNP [dm3] 3L_10571091_SNP [dm6]	T	C	3.556e^-4	0.886	NON_SYNONYMOUS_CODING A2bp1 INTRON A2bp1
2L	8706681	2L_8706681_SNP [dm3] 2L_8706681_SNP [dm6]	G	T	3.576e^-4	0.886	SYNONYMOUS_CODING CG9314 INTRON Hnf4	TF binding site mE1_TFBS_sens
2R	5060610	2R_5060610_SNP [dm3] 2R_9173105_SNP [dm6]	C	T	3.577e^-4	0.886	SYNONYMOUS_CODING Rme-8	TF binding site mE1_TFBS_sens
3R	9649792	3R_9649792_SNP [dm3] 3R_13824070_SNP [dm6]	G	A	3.586e^-4	0.886	INTERGENIC
2L	11151513	2L_11151513_SNP [dm3] 2L_11151513_SNP [dm6]	A	G	3.589e^-4	0.886	UTR_3_PRIME CG6287	TF binding site mE1_TFBS_kn
2R	11133463	2R_11133463_SNP [dm3] 2R_15245958_SNP [dm6]	A	C	3.591e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18729382	3L_18729382_SNP [dm3] 3L_18736282_SNP [dm6]	C	A	3.605e^-4	0.886	INTERGENIC
2L	6922537	2L_6922537_SNP [dm3] 2L_6922537_SNP [dm6]	A	T	3.618e^-4	0.886	INTRON Hrb27C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	20132458	2R_20132458_SNP [dm3] 2R_24244935_SNP [dm6]	C	T	3.629e^-4	0.886	SYNONYMOUS_CODING nord	TF binding site mE1_TFBS_chinmo
X	7644493	X_7644493_SNP [dm3] X_7750460_SNP [dm6]	C	G	3.633e^-4	0.886	INTERGENIC
2L	18526749	2L_18526749_SNP [dm3] 2L_18526749_SNP [dm6]	C	A	3.638e^-4	0.886	INTRON CG10211	TF binding site mE1_TFBS_cad
2L	18526756	2L_18526756_SNP [dm3] 2L_18526756_SNP [dm6]	C	T	3.638e^-4	0.886	INTRON CG10211	TF binding site mE1_TFBS_cad
2L	18526758	2L_18526758_SNP [dm3] 2L_18526758_SNP [dm6]	G	T	3.638e^-4	0.886	INTRON CG10211	TF binding site mE1_TFBS_cad
2R	7672639	2R_7672639_SNP [dm3] 2R_11785134_SNP [dm6]	A	T	3.648e^-4	0.886	INTRON ths
3L	12342999	3L_12342999_DEL [dm3] 3L_12349899_DEL [dm6]	CT	G	3.658e^-4	0.886	INTRON CrzR
3R	16672615	3R_16672615_SNP [dm3] 3R_20846893_SNP [dm6]	A	C	3.658e^-4	0.886	UPSTREAM CG15696 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16149045	X_16149045_SNP [dm3] X_16255012_SNP [dm6]	C	A	3.676e^-4	0.886	UPSTREAM snRNA:U5:14B DOWNSTREAM snRNA:U2:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15857122	3R_15857122_SNP [dm3] 3R_20031400_SNP [dm6]	G	T	3.679e^-4	0.886	UPSTREAM CG4936 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10395950	2R_10395950_SNP [dm3] 2R_14508445_SNP [dm6]	C	G	3.695e^-4	0.886	SYNONYMOUS_CODING Asx
2R	2480661	2R_2480661_SNP [dm3] 2R_6593156_SNP [dm6]	G	A	3.705e^-4	0.886	INTRON jing	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	11132834	2R_11132834_SNP [dm3] 2R_15245329_SNP [dm6]	G	C	3.707e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_cad
3R	16288682	3R_16288682_SNP [dm3] 3R_20462960_SNP [dm6]	G	T	3.708e^-4	0.886	INTRON Gfrl
3L	10134846	3L_10134846_SNP [dm3] 3L_10141746_SNP [dm6]	C	T	3.714e^-4	0.886	INTERGENIC
2R	4273902	2R_4273902_SNP [dm3] 2R_8386397_SNP [dm6]	T	C	3.717e^-4	0.886	UPSTREAM pdm3 INTRON pdm3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	850522	3R_850522_SNP [dm3] 3R_5024800_SNP [dm6]	T	A	3.740e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr
3R	16670532	3R_16670532_SNP [dm3] 3R_20844810_SNP [dm6]	G	T	3.780e^-4	0.886	UTR_3_PRIME CG15695
2R	14779583	2R_14779583_SNP [dm3] 2R_18892078_SNP [dm6]	C	T	3.803e^-4	0.886	INTRON sano
2R	9306891	2R_9306891_SNP [dm3] 2R_13419386_SNP [dm6]	G	A	3.805e^-4	0.886	SYNONYMOUS_CODING CG42321
2L	9302239	2L_9302239_SNP [dm3] 2L_9302239_SNP [dm6]	T	C	3.805e^-4	0.886	UTR_3_PRIME Ggamma30A
3L	12341937	3L_12341937_SNP [dm3] 3L_12348837_SNP [dm6]	A	G	3.815e^-4	0.886	INTRON CrzR
2L	14489106	2L_14489106_SNP [dm3] 2L_14489106_SNP [dm6]	A	G	3.850e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	6619711	3L_6619711_SNP [dm3] 3L_6626611_SNP [dm6]	C	T	3.876e^-4	0.886	INTRON GluRIA
X	12480511	X_12480511_SNP [dm3] X_12586478_SNP [dm6]	T	A	3.885e^-4	0.886	NON_SYNONYMOUS_CODING LIMK1	TF binding site mE1_TFBS_chinmo
2L	8644350	2L_8644350_SNP [dm3] 2L_8644350_SNP [dm6]	A	T	3.892e^-4	0.886	INTRON Sema-1a
3L	15263322	3L_15263322_INS [dm3] 3L_15270222_INS [dm6]	T	TT	3.893e^-4	0.886	INTERGENIC
X	7637476	X_7637476_SNP [dm3] X_7743443_SNP [dm6]	A	G	3.901e^-4	0.886	INTERGENIC
3R	10982179	3R_10982179_SNP [dm3] 3R_15156457_SNP [dm6]	A	G	3.903e^-4	0.886	INTRON Gyc88E
2R	17076401	2R_17076401_SNP [dm3] 2R_21188896_SNP [dm6]	T	G	3.914e^-4	0.886	NON_SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_sens
X	11306891	X_11306891_SNP [dm3] X_11412858_SNP [dm6]	C	T	3.922e^-4	0.886	SYNONYMOUS_CODING Gr10b DOWNSTREAM Gr10a
2L	16583349	2L_16583349_SNP [dm3] 2L_16583349_SNP [dm6]	T	A	3.938e^-4	0.886	INTRON CG42389	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	12790534	2L_12790534_SNP [dm3] 2L_12790534_SNP [dm6]	T	A	3.939e^-4	0.886	INTERGENIC
2R	13720230	2R_13720230_INS [dm3] 2R_17832725_INS [dm6]	G	GAC	3.959e^-4	0.886	INTRON grh	TF binding site mE1_TFBS_HSA
X	21178485	X_21178485_SNP [dm3] X_21307458_SNP [dm6]	G	A	3.965e^-4	0.886	UPSTREAM CG1718 DOWNSTREAM CG1801 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19455900	3R_19455900_SNP [dm3] 3R_23630178_SNP [dm6]	A	G	3.983e^-4	0.886	INTRON CG31145
3R	13874922	3R_13874922_SNP [dm3] 3R_18049200_SNP [dm6]	G	C	3.992e^-4	0.886	UTR_5_PRIME htl INTRON htl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12796658	2L_12796658_INS [dm3] 2L_12796658_INS [dm6]	A	AAGCACA	4.002e^-4	0.886	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	6984290	2L_6984290_SNP [dm3] 2L_6984290_SNP [dm6]	A	G	4.008e^-4	0.886	SYNONYMOUS_CODING uif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	21325068	3L_21325068_SNP [dm3] 3L_21331968_SNP [dm6]	T	C	4.022e^-4	0.886	INTRON Rab26
2L	18185039	2L_18185039_SNP [dm3] 2L_18185039_SNP [dm6]	T	A	4.033e^-4	0.886	UPSTREAM CG7180 DOWNSTREAM CR44900 INTRON CG42750	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	21708318	3L_21708318_SNP [dm3] 3L_21715218_SNP [dm6]	G	T	4.059e^-4	0.886	INTERGENIC
X	12480473	X_12480473_SNP [dm3] X_12586440_SNP [dm6]	T	G	4.060e^-4	0.886	SYNONYMOUS_CODING LIMK1	TF binding site mE1_TFBS_chinmo
2R	19716919	2R_19716919_SNP [dm3] 2R_23829396_SNP [dm6]	A	C	4.063e^-4	0.886	INTRON CG5549
X	2139804	X_2139804_SNP [dm3] X_2245771_SNP [dm6]	G	A	4.083e^-4	0.886	UTR_3_PRIME fs_1_K10 UPSTREAM Or2a
2R	9363604	2R_9363604_SNP [dm3] 2R_13476099_SNP [dm6]	C	A	4.097e^-4	0.886	INTRON arr
3R	20564458	3R_20564458_SNP [dm3] 3R_24738736_SNP [dm6]	T	A	4.107e^-4	0.886	INTRON tok
2L	3490465	2L_3490465_SNP [dm3] 2L_3490465_SNP [dm6]	T	C	4.110e^-4	0.886	INTRON CG15414
3L	12578615	3L_12578615_SNP [dm3] 3L_12585515_SNP [dm6]	A	G	4.134e^-4	0.886	INTRON ara	TF binding site BDTNP1_TFBS_dl
2R	9811104	2R_9811104_SNP [dm3] 2R_13923599_SNP [dm6]	C	T	4.144e^-4	0.886	INTRON shot	TF binding site BDTNP1_TFBS_dl
2L	10009893	2L_10009893_SNP [dm3] 2L_10009893_SNP [dm6]	A	C	4.152e^-4	0.886	UPSTREAM Trp1 INTRON Trp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	21178498	X_21178498_SNP [dm3] X_21307471_SNP [dm6]	A	C	4.155e^-4	0.886	UPSTREAM CG1718 DOWNSTREAM CG1801 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17660111	3R_17660111_SNP [dm3] 3R_21834389_SNP [dm6]	C	T	4.179e^-4	0.886	DOWNSTREAM Gr93a INTERGENIC
3L	6983256	3L_6983256_SNP [dm3] 3L_6990156_SNP [dm6]	G	A	4.181e^-4	0.886	UPSTREAM bin INTERGENIC
X	10004623	X_10004623_SNP [dm3] X_10110590_SNP [dm6]	T	C	4.195e^-4	0.886	INTRON RhoU
3R	16964101	3R_16964101_SNP [dm3] 3R_21138379_SNP [dm6]	A	C	4.203e^-4	0.886	UTR_5_PRIME meigo UPSTREAM meigo DOWNSTREAM Ubpy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
3L	10042034	3L_10042034_DEL [dm3] 3L_10048934_DEL [dm6]	TACAGTTGATTGATATTTTT...	T	4.246e^-4	0.886	INTRON dpr6
2R	8363525	2R_8363525_SNP [dm3] 2R_12476020_SNP [dm6]	T	G	4.248e^-4	0.886	INTRON Dh44-R2
2R	17946976	2R_17946976_SNP [dm3] 2R_22059471_SNP [dm6]	C	T	4.254e^-4	0.886	SYNONYMOUS_CODING CG13501	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3R	26642256	3R_26642256_SNP [dm3] 3R_30816534_SNP [dm6]	G	A	4.267e^-4	0.886	INTRON cindr
2L	18360923	2L_18360923_SNP [dm3] 2L_18360923_SNP [dm6]	A	G	4.275e^-4	0.886	INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	15325877	3R_15325877_SNP [dm3] 3R_19500155_SNP [dm6]	C	A	4.285e^-4	0.886	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	18143382	3L_18143382_SNP [dm3] 3L_18150282_SNP [dm6]	T	G	4.292e^-4	0.886	INTRON CG7330
2R	19142187	2R_19142187_SNP [dm3] 2R_23254664_SNP [dm6]	G	A	4.297e^-4	0.886	INTERGENIC
2L	12854130	2L_12854130_SNP [dm3] 2L_12854130_SNP [dm6]	T	A	4.304e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	21174457	X_21174457_SNP [dm3] X_21303430_SNP [dm6]	G	A	4.309e^-4	0.886	UPSTREAM CG1718 INTRON CG1718
2R	13060487	2R_13060487_SNP [dm3] 2R_17172982_SNP [dm6]	T	G	4.327e^-4	0.886	INTERGENIC
2R	6890685	2R_6890685_SNP [dm3] 2R_11003180_SNP [dm6]	C	A	4.332e^-4	0.886	INTRON luna
3R	19128605	3R_19128605_INS [dm3] 3R_23302883_INS [dm6]	A	AGTCTCAA	4.350e^-4	0.886	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	21037319	X_21037319_SNP [dm3] X_21166292_SNP [dm6]	C	T	4.353e^-4	0.886	INTERGENIC
3L	10088186	3L_10088186_SNP [dm3] 3L_10095086_SNP [dm6]	T	A	4.354e^-4	0.886	UPSTREAM CG32054 DOWNSTREAM CG42825 INTRON dpr6
2R	13170207	2R_13170207_DEL [dm3] 2R_17282702_DEL [dm6]	GG	G	4.360e^-4	0.886	INTRON mbl
3L	2460480	3L_2460480_SNP [dm3] 3L_2460480_SNP [dm6]	A	C	4.366e^-4	0.886	UPSTREAM CG45186 INTRON CG45186
X	7639384	X_7639384_SNP [dm3] X_7745351_SNP [dm6]	G	T	4.373e^-4	0.886	INTERGENIC
X	7639456	X_7639456_SNP [dm3] X_7745423_SNP [dm6]	C	T	4.373e^-4	0.886	INTERGENIC
X	7639461	X_7639461_SNP [dm3] X_7745428_SNP [dm6]	T	C	4.373e^-4	0.886	INTERGENIC
X	9055927	X_9055927_SNP [dm3] X_9161894_SNP [dm6]	T	C	4.385e^-4	0.886	SYNONYMOUS_CODING Zpr1 UPSTREAM CG44532	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	12456759	2R_12456759_SNP [dm3] 2R_16569254_SNP [dm6]	T	C	4.391e^-4	0.886	SYNONYMOUS_CODING CG4945 DOWNSTREAM RpS15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8714124	2L_8714124_SNP [dm3] 2L_8714124_SNP [dm6]	G	A	4.392e^-4	0.886	NON_SYNONYMOUS_CODING raw SPLICE_SITE_REGION raw INTRON raw
2L	8714910	2L_8714910_SNP [dm3] 2L_8714910_SNP [dm6]	A	G	4.392e^-4	0.886	UPSTREAM raw INTRON raw
2L	8714914	2L_8714914_SNP [dm3] 2L_8714914_SNP [dm6]	T	G	4.392e^-4	0.886	UPSTREAM raw INTRON raw
2L	8715013	2L_8715013_SNP [dm3] 2L_8715013_SNP [dm6]	A	T	4.392e^-4	0.886	UPSTREAM raw INTRON raw
2L	8715206	2L_8715206_SNP [dm3] 2L_8715206_SNP [dm6]	G	T	4.392e^-4	0.886	UPSTREAM raw INTRON raw
2L	8715342	2L_8715342_SNP [dm3] 2L_8715342_SNP [dm6]	A	C	4.392e^-4	0.886	UPSTREAM raw INTRON raw
2L	8715468	2L_8715468_SNP [dm3] 2L_8715468_SNP [dm6]	A	T	4.392e^-4	0.886	UPSTREAM raw INTRON raw
2L	8716279	2L_8716279_SNP [dm3] 2L_8716279_SNP [dm6]	G	C	4.392e^-4	0.886	INTRON raw
X	9201567	X_9201567_SNP [dm3] X_9307534_SNP [dm6]	G	A	4.393e^-4	0.886	INTERGENIC
3L	2476439	3L_2476439_SNP [dm3] 3L_2476439_SNP [dm6]	A	T	4.394e^-4	0.886	SYNONYMOUS_CODING Cyp4d20 UPSTREAM CG16762 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	21998946	3L_21998946_DEL [dm3] 3L_22005846_DEL [dm6]	CC	C	4.432e^-4	0.886	INTERGENIC
3R	22649744	3R_22649744_SNP [dm3] 3R_26824022_SNP [dm6]	A	C	4.434e^-4	0.886	INTRON Tl	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
X	7639382	X_7639382_SNP [dm3] X_7745349_SNP [dm6]	C	T	4.437e^-4	0.886	INTERGENIC
3R	13714927	3R_13714927_SNP [dm3] 3R_17889205_SNP [dm6]	G	T	4.456e^-4	0.886	INTRON Rim
X	7636513	X_7636513_INS [dm3] X_7742480_INS [dm6]	A	AA	4.459e^-4	0.886	INTERGENIC
2R	17807287	2R_17807287_SNP [dm3] 2R_21919782_SNP [dm6]	A	G	4.462e^-4	0.886	INTRON Fili
3R	18597699	3R_18597699_SNP [dm3] 3R_22771977_SNP [dm6]	C	G	4.471e^-4	0.886	UPSTREAM CG43094 & 1 other INTRON Usp12-46 & 1 other
3R	27386739	3R_27386739_SNP [dm3] 3R_31561017_SNP [dm6]	T	A	4.473e^-4	0.886	SYNONYMOUS_CODING nyo	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13782558	2R_13782558_SNP [dm3] 2R_17895053_SNP [dm6]	C	T	4.483e^-4	0.886	UPSTREAM CG14491 & 1 other INTRON Elk	TF binding site BDTNP1_TFBS_twi
2L	8290802	2L_8290802_SNP [dm3] 2L_8290802_SNP [dm6]	A	T	4.521e^-4	0.886	DOWNSTREAM tRNA:K5:29A INTRON Btk29A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12001907	2R_12001907_SNP [dm3] 2R_16114402_SNP [dm6]	A	G	4.528e^-4	0.886	SYNONYMOUS_CODING Asph INTRON Asph
2R	12001910	2R_12001910_SNP [dm3] 2R_16114405_SNP [dm6]	G	C	4.528e^-4	0.886	SYNONYMOUS_CODING Asph INTRON Asph
2R	12001940	2R_12001940_SNP [dm3] 2R_16114435_SNP [dm6]	T	C	4.528e^-4	0.886	SYNONYMOUS_CODING Asph INTRON Asph
X	13481616	X_13481616_SNP [dm3] X_13587583_SNP [dm6]	G	C	4.530e^-4	0.886	INTRON Tango13
2R	9334383	2R_9334383_SNP [dm3] 2R_13446878_SNP [dm6]	T	G	4.564e^-4	0.886	UPSTREAM CG30062 INTRON cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	11306284	3L_11306284_SNP [dm3] 3L_11313184_SNP [dm6]	C	A	4.581e^-4	0.886	SYNONYMOUS_CODING CG7573	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3053992	3L_3053992_SNP [dm3] 3L_3053992_SNP [dm6]	C	T	4.587e^-4	0.886	SYNONYMOUS_CODING CG1271	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3053999	3L_3053999_SNP [dm3] 3L_3053999_SNP [dm6]	C	T	4.587e^-4	0.886	SYNONYMOUS_CODING CG1271	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8186438	3R_8186438_SNP [dm3] 3R_12360716_SNP [dm6]	G	A	4.611e^-4	0.886	INTRON CG4115
2L	7071116	2L_7071116_SNP [dm3] 2L_7071116_SNP [dm6]	T	C	4.620e^-4	0.886	INTRON Pvf2
2L	7071139	2L_7071139_SNP [dm3] 2L_7071139_SNP [dm6]	A	G	4.620e^-4	0.886	INTRON Pvf2
2L	6591933	2L_6591933_SNP [dm3] 2L_6591933_SNP [dm6]	C	G	4.622e^-4	0.886	INTRON CG11319
X	3192201	X_3192201_SNP [dm3] X_3298168_SNP [dm6]	G	T	4.624e^-4	0.886	INTRON dnc	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	3192207	X_3192207_SNP [dm3] X_3298174_SNP [dm6]	G	A	4.624e^-4	0.886	INTRON dnc	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	15345225	3R_15345225_SNP [dm3] 3R_19519503_SNP [dm6]	T	A	4.634e^-4	0.886	INTRON Dys
3R	15345264	3R_15345264_SNP [dm3] 3R_19519542_SNP [dm6]	G	C	4.634e^-4	0.886	INTRON Dys
3L	12324637	3L_12324637_SNP [dm3] 3L_12331537_SNP [dm6]	A	G	4.636e^-4	0.886	INTRON CG32105	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	3401173	2R_3401173_SNP [dm3] 2R_7513668_SNP [dm6]	T	C	4.637e^-4	0.886	UPSTREAM az2 DOWNSTREAM CG1603 INTERGENIC	transposable element FlyBase
2L	9438564	2L_9438564_SNP [dm3] 2L_9438564_SNP [dm6]	G	A	4.639e^-4	0.886	INTRON numb	TF binding site BDTNP1_TFBS_dl
2L	17462529	2L_17462529_SNP [dm3] 2L_17462529_SNP [dm6]	G	C	4.640e^-4	0.886	SYNONYMOUS_CODING BicD
3R	22782989	3R_22782989_SNP [dm3] 3R_26957267_SNP [dm6]	C	G	4.644e^-4	0.886	INTRON CG6330	TF binding site mE1_TFBS_inv
3R	11853124	3R_11853124_SNP [dm3] 3R_16027402_SNP [dm6]	A	G	4.649e^-4	0.886	INTRON pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2R	11163598	2R_11163598_SNP [dm3] 2R_15276093_SNP [dm6]	C	A	4.653e^-4	0.886	INTRON Trpm
3L	14321057	3L_14321057_SNP [dm3] 3L_14327957_SNP [dm6]	C	T	4.659e^-4	0.886	INTRON fz
3L	391963	3L_391963_DEL [dm3] 3L_391963_DEL [dm6]	TCTTGTGACTTTT...	A	4.663e^-4	0.886	DOWNSTREAM CR45378 INTRON trh
3L	22033461	3L_22033461_INS [dm3] 3L_22040361_INS [dm6]	A	AA	4.664e^-4	0.886	INTRON Oct-TyrR
3L	5489067	3L_5489067_DEL [dm3] 3L_5495967_DEL [dm6]	CATCCAT	C	4.665e^-4	0.886	INTERGENIC
3L	7871727	3L_7871727_SNP [dm3] 3L_7878627_SNP [dm6]	A	G	4.678e^-4	0.886	INTRON CG32365
2R	17078601	2R_17078601_SNP [dm3] 2R_21191096_SNP [dm6]	A	G	4.679e^-4	0.886	NON_SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	22950996	3L_22950996_SNP [dm3] 3L_22957896_SNP [dm6]	T	C	4.699e^-4	0.886	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	20475851	2R_20475851_SNP [dm3] 2R_24588328_SNP [dm6]	G	T	4.703e^-4	0.886	INTRON pio
X	21157548	X_21157548_SNP [dm3] X_21286521_SNP [dm6]	G	A	4.730e^-4	0.886	INTRON CG1494
3L	19021075	3L_19021075_SNP [dm3] 3L_19027975_SNP [dm6]	C	T	4.731e^-4	0.886	INTRON nkd
3L	2413202	3L_2413202_INS [dm3] 3L_2413202_INS [dm6]	A	AA	4.747e^-4	0.886	UPSTREAM CG45186 INTRON CG45186
3R	14643284	3R_14643284_DEL [dm3] 3R_18817562_DEL [dm6]	AAGAATATACATAATAATGT...	A	4.773e^-4	0.886	INTRON CG18208
3R	26636155	3R_26636155_SNP [dm3] 3R_30810433_SNP [dm6]	T	G	4.801e^-4	0.886	INTRON cindr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad
3R	26636191	3R_26636191_SNP [dm3] 3R_30810469_SNP [dm6]	G	A	4.801e^-4	0.886	INTRON cindr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad
3L	14180976	3L_14180976_SNP [dm3] 3L_14187876_SNP [dm6]	A	T	4.801e^-4	0.886	SYNONYMOUS_CODING nan
3L	7939707	3L_7939707_SNP [dm3] 3L_7946607_SNP [dm6]	C	A	4.804e^-4	0.886	UPSTREAM CG43880 INTERGENIC
3R	15158863	3R_15158863_SNP [dm3] 3R_19333141_SNP [dm6]	G	A	4.806e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15158883	3R_15158883_DEL [dm3] 3R_19333161_DEL [dm6]	ATA	A	4.806e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	15158925	3R_15158925_SNP [dm3] 3R_19333203_SNP [dm6]	A	C	4.806e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	16048851	3R_16048851_SNP [dm3] 3R_20223129_SNP [dm6]	C	A	4.806e^-4	0.886	INTRON Nlg4	TF binding site BDTNP1_TFBS_twi
3L	9669689	3L_9669689_SNP [dm3] 3L_9676589_SNP [dm6]	T	A	4.816e^-4	0.886	INTRON fry	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18462563	2R_18462563_SNP [dm3] 2R_22575058_SNP [dm6]	C	T	4.827e^-4	0.886	INTRON dnr1
3R	18490632	3R_18490632_SNP [dm3] 3R_22664910_SNP [dm6]	T	C	4.838e^-4	0.886	SYNONYMOUS_CODING CG45058 UTR_5_PRIME CG45058	TF binding site mE1_TFBS_chinmo
2L	5428930	2L_5428930_SNP [dm3] 2L_5428930_SNP [dm6]	C	T	4.840e^-4	0.886	INTERGENIC
2L	5428966	2L_5428966_SNP [dm3] 2L_5428966_SNP [dm6]	G	A	4.840e^-4	0.886	INTERGENIC
2L	5428976	2L_5428976_SNP [dm3] 2L_5428976_SNP [dm6]	C	T	4.840e^-4	0.886	INTERGENIC
2R	5364541	2R_5364541_SNP [dm3] 2R_9477036_SNP [dm6]	T	A	4.846e^-4	0.886	INTRON Camta	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13817353	3L_13817353_DEL [dm3] 3L_13824253_DEL [dm6]	AG	A	4.846e^-4	0.886	INTERGENIC
3L	14975188	3L_14975188_SNP [dm3] 3L_14982088_SNP [dm6]	G	A	4.854e^-4	0.886	SYNONYMOUS_CODING CG3349 UPSTREAM CG5114
3R	24948000	3R_24948000_DEL [dm3] 3R_29122278_DEL [dm6]	TT	T	4.857e^-4	0.886	UTR_5_PRIME yem	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	16674855	3R_16674855_SNP [dm3] 3R_20849133_SNP [dm6]	A	C	4.862e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16674857	3R_16674857_SNP [dm3] 3R_20849135_SNP [dm6]	A	G	4.862e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6923067	2L_6923067_SNP [dm3] 2L_6923067_SNP [dm6]	A	G	4.864e^-4	0.886	INTRON Hrb27C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13438386	3R_13438386_SNP [dm3] 3R_17612664_SNP [dm6]	T	A	4.870e^-4	0.886	UPSTREAM CG34281 INTERGENIC
3R	13438398	3R_13438398_SNP [dm3] 3R_17612676_SNP [dm6]	T	A	4.870e^-4	0.886	UPSTREAM CG34281 INTERGENIC
3L	11300438	3L_11300438_INS [dm3] 3L_11307338_INS [dm6]	A	ATTAATTAA	4.877e^-4	0.886	INTERGENIC	TF binding site mE1_TFBS_cad
3R	21365426	3R_21365426_SNP [dm3] 3R_25539704_SNP [dm6]	T	A	4.895e^-4	0.886	INTRON msi
3R	1100911	3R_1100911_SNP [dm3] 3R_5275189_SNP [dm6]	C	T	4.900e^-4	0.886	DOWNSTREAM CG31538 INTRON mtd
2L	12854088	2L_12854088_DEL [dm3] 2L_12854088_DEL [dm6]	TTCCACACAT	T	4.935e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12854126	2L_12854126_SNP [dm3] 2L_12854126_SNP [dm6]	A	C	4.935e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	1981645	X_1981645_SNP [dm3] X_2087612_SNP [dm6]	A	G	4.936e^-4	0.886	INTRON Unc-76	TF binding site BDTNP1_TFBS_dl
X	1981697	X_1981697_SNP [dm3] X_2087664_SNP [dm6]	A	T	4.936e^-4	0.886	INTRON Unc-76	TF binding site BDTNP1_TFBS_dl
2L	3786208	2L_3786208_SNP [dm3] 2L_3786208_SNP [dm6]	C	G	4.941e^-4	0.886	SYNONYMOUS_CODING CG31958 UPSTREAM CG3921 DOWNSTREAM CG31960	TF binding site mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	17660127	3R_17660127_SNP [dm3] 3R_21834405_SNP [dm6]	G	T	4.970e^-4	0.886	DOWNSTREAM Gr93a INTERGENIC
3R	17660128	3R_17660128_SNP [dm3] 3R_21834406_SNP [dm6]	A	T	4.970e^-4	0.886	DOWNSTREAM Gr93a INTERGENIC
2L	15190967	2L_15190967_SNP [dm3] 2L_15190967_SNP [dm6]	T	C	4.975e^-4	0.886	INTRON CG4168
2R	17001408	2R_17001408_SNP [dm3] 2R_21113903_SNP [dm6]	G	A	4.986e^-4	0.886	INTRON ktub
3R	22771920	3R_22771920_SNP [dm3] 3R_26946198_SNP [dm6]	A	G	4.990e^-4	0.886	DOWNSTREAM sda INTRON CG14252	TF binding site mE1_TFBS_HSA
2R	16391217	2R_16391217_SNP [dm3] 2R_20503712_SNP [dm6]	T	A	4.997e^-4	0.886	NON_SYNONYMOUS_CODING Obp57c UPSTREAM Obp57b	regulatory region REDfly_CRMs
2L	13586957	2L_13586957_SNP [dm3] 2L_13586957_SNP [dm6]	G	A	4.999e^-4	0.886	INTRON kuz
2L	6744470	2L_6744470_SNP [dm3] 2L_6744470_SNP [dm6]	T	A	5.019e^-4	0.886	UPSTREAM snoRNA:Me28S-G2743 DOWNSTREAM CG31910 INTRON CG11221
2L	6744479	2L_6744479_SNP [dm3] 2L_6744479_SNP [dm6]	C	T	5.019e^-4	0.886	UPSTREAM snoRNA:Me28S-G2743 DOWNSTREAM CG31910 INTRON CG11221
2L	6744486	2L_6744486_SNP [dm3] 2L_6744486_SNP [dm6]	G	T	5.019e^-4	0.886	UPSTREAM snoRNA:Me28S-G2743 DOWNSTREAM CG31910 INTRON CG11221
3L	15299741	3L_15299741_SNP [dm3] 3L_15306641_SNP [dm6]	G	A	5.019e^-4	0.886	SYNONYMOUS_CODING CG7255
3L	9397643	3L_9397643_SNP [dm3] 3L_9404543_SNP [dm6]	A	T	5.019e^-4	0.886	UPSTREAM Cpr67B INTERGENIC
3R	14778731	3R_14778731_SNP [dm3] 3R_18953009_SNP [dm6]	G	A	5.019e^-4	0.886	INTRON CG42613 & 1 other
3L	14162469	3L_14162469_SNP [dm3] 3L_14169369_SNP [dm6]	C	T	5.038e^-4	0.886	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	17465472	2R_17465472_SNP [dm3] 2R_21577967_SNP [dm6]	G	A	5.044e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	11866039	3R_11866039_SNP [dm3] 3R_16040317_SNP [dm6]	A	T	5.046e^-4	0.886	UTR_3_PRIME pnr	TF binding site mE1_TFBS_cad
X	17228168	X_17228168_SNP [dm3] X_17334135_SNP [dm6]	C	T	5.085e^-4	0.886	INTERGENIC
3L	18947421	3L_18947421_SNP [dm3] 3L_18954321_SNP [dm6]	C	T	5.093e^-4	0.886	SYNONYMOUS_CODING CG6836
3L	13884240	3L_13884240_SNP [dm3] 3L_13891140_SNP [dm6]	T	C	5.102e^-4	0.886	INTRON dysc
3L	9661340	3L_9661340_SNP [dm3] 3L_9668240_SNP [dm6]	C	G	5.105e^-4	0.886	INTRON fry	TF binding site mE1_TFBS_cad
3R	15412003	3R_15412003_SNP [dm3] 3R_19586281_SNP [dm6]	C	G	5.107e^-4	0.886	NON_SYNONYMOUS_CODING Dys DOWNSTREAM snoRNA:Me18S-A1374 INTRON Dys	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	22135333	3L_22135333_SNP [dm3] 3L_22142233_SNP [dm6]	T	C	5.107e^-4	0.886	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	14834093	3R_14834093_SNP [dm3] 3R_19008371_SNP [dm6]	G	C	5.123e^-4	0.886	INTRON gukh	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10222644	3R_10222644_DEL [dm3] 3R_14396922_DEL [dm6]	TA	G	5.128e^-4	0.886	UPSTREAM mir-2281 INTRON cv-c
X	3970331	X_3970331_SNP [dm3] X_4076298_SNP [dm6]	C	A	5.134e^-4	0.886	UTR_5_PRIME CG43689
X	2554510	X_2554510_SNP [dm3] X_2660477_SNP [dm6]	A	G	5.143e^-4	0.886	SYNONYMOUS_CODING sgg INTRON sgg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8083355	3R_8083355_SNP [dm3] 3R_12257633_SNP [dm6]	G	A	5.146e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	15348229	3R_15348229_INS [dm3] 3R_19522507_INS [dm6]	A	AA	5.161e^-4	0.886	INTRON Dys
3R	20712655	3R_20712655_SNP [dm3] 3R_24886933_SNP [dm6]	C	T	5.163e^-4	0.886	INTRON CG31121
2R	7511528	2R_7511528_SNP [dm3] 2R_11624023_SNP [dm6]	A	G	5.170e^-4	0.886	SYNONYMOUS_CODING CG9005	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11468733	3R_11468733_SNP [dm3] 3R_15643011_SNP [dm6]	C	A	5.182e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14333402	3L_14333402_SNP [dm3] 3L_14340302_SNP [dm6]	G	T	5.184e^-4	0.886	INTRON fz	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	5887538	3L_5887538_SNP [dm3] 3L_5894438_SNP [dm6]	C	T	5.186e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25094822	3R_25094822_SNP [dm3] 3R_29269100_SNP [dm6]	A	G	5.197e^-4	0.886	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	22167574	3L_22167574_SNP [dm3] 3L_22174474_SNP [dm6]	C	A	5.198e^-4	0.886	INTRON olf413	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	7241517	2L_7241517_SNP [dm3] 2L_7241517_SNP [dm6]	C	T	5.213e^-4	0.886	INTRON Ndae1
3R	16594429	3R_16594429_INS [dm3] 3R_20768707_INS [dm6]	C	CCTTATTAAGCTAGCC...	5.223e^-4	0.886	INTRON Syp
3R	20432067	3R_20432067_SNP [dm3] 3R_24606345_SNP [dm6]	T	A	5.230e^-4	0.886	INTRON mld	TF binding site BDTNP1_TFBS_dl
3R	15325848	3R_15325848_SNP [dm3] 3R_19500126_SNP [dm6]	C	T	5.252e^-4	0.886	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9774197	2L_9774197_SNP [dm3] 2L_9774197_SNP [dm6]	A	G	5.275e^-4	0.886	SYNONYMOUS_CODING ppk11
3R	20935638	3R_20935638_SNP [dm3] 3R_25109916_SNP [dm6]	C	T	5.280e^-4	0.886	SPLICE_SITE_REGION CG13650 UPSTREAM CG34027 INTRON CG13650
2R	17417112	2R_17417112_SNP [dm3] 2R_21529607_SNP [dm6]	T	C	5.288e^-4	0.886	INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	22932152	3R_22932152_SNP [dm3] 3R_27106430_SNP [dm6]	A	G	5.296e^-4	0.886	UPSTREAM CG6074 INTERGENIC
2L	6924657	2L_6924657_SNP [dm3] 2L_6924657_SNP [dm6]	C	T	5.320e^-4	0.886	INTRON Hrb27C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	7484430	3L_7484430_SNP [dm3] 3L_7491330_SNP [dm6]	G	A	5.323e^-4	0.886	UPSTREAM Cyp316a1 INTERGENIC
2R	10997976	2R_10997976_SNP [dm3] 2R_15110471_SNP [dm6]	C	G	5.329e^-4	0.886	INTERGENIC
2R	13795016	2R_13795016_SNP [dm3] 2R_17907511_SNP [dm6]	A	G	5.338e^-4	0.886	INTRON Elk
X	12480707	X_12480707_INS [dm3] X_12586674_INS [dm6]	G	GACAATGGTGCCATTG...	5.339e^-4	0.886	CODON_INSERTION LIMK1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8704329	2L_8704329_SNP [dm3] 2L_8704329_SNP [dm6]	C	A	5.341e^-4	0.886	INTRON Hnf4 EXON CR44992
3L	8144556	3L_8144556_SNP [dm3] 3L_8151456_SNP [dm6]	T	A	5.359e^-4	0.886	INTRON CG13676	TF binding site BDTNP1_TFBS_prd
3L	8144560	3L_8144560_SNP [dm3] 3L_8151460_SNP [dm6]	T	C	5.359e^-4	0.886	INTRON CG13676	TF binding site BDTNP1_TFBS_prd
3L	1526252	3L_1526252_SNP [dm3] 3L_1526252_SNP [dm6]	A	G	5.367e^-4	0.886	INTRON CG12090
3L	9200857	3L_9200857_SNP [dm3] 3L_9207757_SNP [dm6]	A	G	5.381e^-4	0.886	INTRON Slc45-1
2L	2123476	2L_2123476_SNP [dm3] 2L_2123476_SNP [dm6]	T	A	5.423e^-4	0.886	INTERGENIC
X	7574870	X_7574870_SNP [dm3] X_7680837_SNP [dm6]	C	T	5.469e^-4	0.886	UPSTREAM CR45666 DOWNSTREAM CR45665 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	9306917	2R_9306917_SNP [dm3] 2R_13419412_SNP [dm6]	T	A	5.483e^-4	0.886	INTRON CG42321
2R	10212405	2R_10212405_SNP [dm3] 2R_14324900_SNP [dm6]	C	T	5.504e^-4	0.886	INTRON Shroom
3L	4752577	3L_4752577_SNP [dm3] 3L_4752577_SNP [dm6]	G	C	5.508e^-4	0.886	SYNONYMOUS_CODING CG12493 INTRON RhoGEF64C
3L	14319780	3L_14319780_SNP [dm3] 3L_14326680_SNP [dm6]	G	A	5.510e^-4	0.886	UPSTREAM CR45025 INTRON fz
2L	8715198	2L_8715198_SNP [dm3] 2L_8715198_SNP [dm6]	A	C	5.527e^-4	0.886	UPSTREAM raw INTRON raw
2L	8715378	2L_8715378_SNP [dm3] 2L_8715378_SNP [dm6]	G	T	5.527e^-4	0.886	UPSTREAM raw INTRON raw
2R	17924372	2R_17924372_SNP [dm3] 2R_22036867_SNP [dm6]	C	T	5.534e^-4	0.886	INTRON CG34370
3R	12895616	3R_12895616_SNP [dm3] 3R_17069894_SNP [dm6]	A	T	5.544e^-4	0.886	UTR_3_PRIME Dad DOWNSTREAM Ns1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	3119504	3L_3119504_SNP [dm3] 3L_3119504_SNP [dm6]	A	T	5.546e^-4	0.886	SYNONYMOUS_CODING prominin-like
3R	16507059	3R_16507059_SNP [dm3] 3R_20681337_SNP [dm6]	G	C	5.565e^-4	0.886	INTERGENIC
3L	22029684	3L_22029684_SNP [dm3] 3L_22036584_SNP [dm6]	A	T	5.567e^-4	0.886	INTRON Oct-TyrR
3R	9901770	3R_9901770_SNP [dm3] 3R_14076048_SNP [dm6]	G	A	5.583e^-4	0.886	INTRON foxo
3R	9901775	3R_9901775_SNP [dm3] 3R_14076053_SNP [dm6]	T	C	5.583e^-4	0.886	INTRON foxo
3L	11290093	3L_11290093_SNP [dm3] 3L_11296993_SNP [dm6]	T	A	5.594e^-4	0.886	INTERGENIC	TF binding site mE1_TFBS_Trl
X	20464738	X_20464738_SNP [dm3] X_20593711_SNP [dm6]	G	A	5.595e^-4	0.886	INTRON RunxA
3L	15608423	3L_15608423_SNP [dm3] 3L_15615323_SNP [dm6]	C	T	5.606e^-4	0.886	INTRON comm3
3L	21714518	3L_21714518_INS [dm3] 3L_21721418_INS [dm6]	T	TC	5.609e^-4	0.886	INTERGENIC
3L	4433079	3L_4433079_SNP [dm3] 3L_4433079_SNP [dm6]	G	T	5.611e^-4	0.886	INTRON nAChRbeta1
3L	12343048	3L_12343048_SNP [dm3] 3L_12349948_SNP [dm6]	T	C	5.616e^-4	0.886	INTRON CrzR
2L	19230959	2L_19230959_SNP [dm3] 2L_19230959_SNP [dm6]	G	C	5.639e^-4	0.886	INTERGENIC
3R	11134847	3R_11134847_SNP [dm3] 3R_15309125_SNP [dm6]	A	T	5.643e^-4	0.886	DOWNSTREAM Tm1 INTERGENIC
3R	10154856	3R_10154856_SNP [dm3] 3R_14329134_SNP [dm6]	G	T	5.648e^-4	0.886	SYNONYMOUS_CODING spn-B DOWNSTREAM NK7.1
2R	9811090	2R_9811090_SNP [dm3] 2R_13923585_SNP [dm6]	T	A	5.658e^-4	0.886	INTRON shot	TF binding site BDTNP1_TFBS_dl
2L	8135441	2L_8135441_SNP [dm3] 2L_8135441_SNP [dm6]	G	C	5.678e^-4	0.886	SYNONYMOUS_CODING CG8552	TF binding site mE1_TFBS_cad
2R	13380237	2R_13380237_SNP [dm3] 2R_17492732_SNP [dm6]	G	A	5.698e^-4	0.886	NON_SYNONYMOUS_CODING NT5E-2 UPSTREAM CG30103
2R	13380260	2R_13380260_SNP [dm3] 2R_17492755_SNP [dm6]	C	T	5.698e^-4	0.886	SYNONYMOUS_CODING NT5E-2 UPSTREAM CG30103	TF binding site mE1_TFBS_HSA
2L	12097826	2L_12097826_SNP [dm3] 2L_12097826_SNP [dm6]	G	C	5.700e^-4	0.886	UPSTREAM Ced-12 DOWNSTREAM Mt2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_ttk
2L	14505069	2L_14505069_SNP [dm3] 2L_14505069_SNP [dm6]	A	G	5.700e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	11779640	2R_11779640_SNP [dm3] 2R_15892135_SNP [dm6]	C	T	5.707e^-4	0.886	INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18859643	2R_18859643_SNP [dm3] 2R_22972120_SNP [dm6]	T	C	5.708e^-4	0.886	INTERGENIC
3R	14371270	3R_14371270_SNP [dm3] 3R_18545548_SNP [dm6]	T	G	5.714e^-4	0.886	UTR_5_PRIME fru	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16594320	3R_16594320_SNP [dm3] 3R_20768598_SNP [dm6]	T	C	5.732e^-4	0.886	INTRON Syp
X	8139824	X_8139824_DEL [dm3] X_8245791_DEL [dm6]	TGA	T	5.736e^-4	0.886	INTRON Trxr-1	TF binding site mE1_TFBS_chinmo
3R	17650933	3R_17650933_SNP [dm3] 3R_21825211_SNP [dm6]	A	G	5.755e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	17650993	3R_17650993_SNP [dm3] 3R_21825271_SNP [dm6]	T	A	5.755e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	17651260	3R_17651260_SNP [dm3] 3R_21825538_SNP [dm6]	T	A	5.755e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv
3R	15857174	3R_15857174_SNP [dm3] 3R_20031452_SNP [dm6]	T	C	5.771e^-4	0.886	UPSTREAM CG4936 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	15857184	3R_15857184_SNP [dm3] 3R_20031462_SNP [dm6]	A	C	5.771e^-4	0.886	UPSTREAM CG4936 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	13979185	2L_13979185_SNP [dm3] 2L_13979185_SNP [dm6]	T	A	5.772e^-4	0.886	UPSTREAM NimC2 INTRON Cyp28a5
3L	10061508	3L_10061508_SNP [dm3] 3L_10068408_SNP [dm6]	C	G	5.773e^-4	0.886	INTRON dpr6
2L	18356777	2L_18356777_SNP [dm3] 2L_18356777_SNP [dm6]	C	A	5.776e^-4	0.886	SYNONYMOUS_CODING Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	3261778	3L_3261778_SNP [dm3] 3L_3261778_SNP [dm6]	G	A	5.783e^-4	0.886	INTRON ckd
2R	13415058	2R_13415058_SNP [dm3] 2R_17527553_SNP [dm6]	A	C	5.792e^-4	0.886	SYNONYMOUS_CODING Patronin	TF binding site mE1_TFBS_HSA
3R	19847516	3R_19847516_SNP [dm3] 3R_24021794_SNP [dm6]	C	T	5.807e^-4	0.886	INTRON KrT95D
2R	14297873	2R_14297873_SNP [dm3] 2R_18410368_SNP [dm6]	C	G	5.811e^-4	0.886	DOWNSTREAM GstE9 INTRON imd
3L	17150092	3L_17150092_SNP [dm3] 3L_17156992_SNP [dm6]	G	A	5.812e^-4	0.886	INTRON Rbp6
3R	23331914	3R_23331914_SNP [dm3] 3R_27506192_SNP [dm6]	G	A	5.815e^-4	0.886	INTERGENIC
3R	23331946	3R_23331946_SNP [dm3] 3R_27506224_SNP [dm6]	C	A	5.815e^-4	0.886	INTERGENIC
3R	23496336	3R_23496336_SNP [dm3] 3R_27670614_SNP [dm6]	G	T	5.821e^-4	0.886	INTRON unc80
3R	23496354	3R_23496354_SNP [dm3] 3R_27670632_SNP [dm6]	A	C	5.821e^-4	0.886	SPLICE_SITE_REGION unc80 INTRON unc80
2R	11753359	2R_11753359_SNP [dm3] 2R_15865854_SNP [dm6]	T	A	5.834e^-4	0.886	SYNONYMOUS_CODING Rif1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6248082	3R_6248082_SNP [dm3] 3R_10422360_SNP [dm6]	A	G	5.884e^-4	0.886	INTERGENIC
2L	18369973	2L_18369973_SNP [dm3] 2L_18369973_SNP [dm6]	A	G	5.891e^-4	0.886	INTRON Fas3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	8360268	2R_8360268_SNP [dm3] 2R_12472763_SNP [dm6]	G	A	5.898e^-4	0.886	SYNONYMOUS_CODING CG8550 UPSTREAM dgt5
2R	8360310	2R_8360310_SNP [dm3] 2R_12472805_SNP [dm6]	T	C	5.898e^-4	0.886	SYNONYMOUS_CODING CG8550
X	7510439	X_7510439_DEL [dm3] X_7616406_DEL [dm6]	GCCGG	G	5.898e^-4	0.886	INTRON ct	TF binding site BDTNP1_TFBS_z
3R	17660107	3R_17660107_SNP [dm3] 3R_21834385_SNP [dm6]	C	A	5.908e^-4	0.886	DOWNSTREAM Gr93a INTERGENIC
3R	15822160	3R_15822160_SNP [dm3] 3R_19996438_SNP [dm6]	G	T	5.916e^-4	0.886	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14372359	3R_14372359_SNP [dm3] 3R_18546637_SNP [dm6]	C	T	5.923e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2887048	3L_2887048_SNP [dm3] 3L_2887048_SNP [dm6]	T	C	5.925e^-4	0.886	INTRON spz5
2L	5240015	2L_5240015_SNP [dm3] 2L_5240015_SNP [dm6]	G	C	5.947e^-4	0.886	UPSTREAM tRNA:CR31971 INTRON tkv	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	4275871	2R_4275871_DEL [dm3] 2R_8388366_DEL [dm6]	ATGCCGATCGA...	A	5.951e^-4	0.886	INTRON pdm3
3L	7223998	3L_7223998_SNP [dm3] 3L_7230898_SNP [dm6]	C	T	5.955e^-4	0.886	INTERGENIC
3R	1874751	3R_1874751_SNP [dm3] 3R_6049029_SNP [dm6]	T	C	5.960e^-4	0.886	INTERGENIC
2R	17143134	2R_17143134_SNP [dm3] 2R_21255629_SNP [dm6]	C	T	5.975e^-4	0.886	UTR_5_PRIME Rgk3 UPSTREAM Rgk3
3R	17693244	3R_17693244_SNP [dm3] 3R_21867522_SNP [dm6]	A	G	5.977e^-4	0.886	SYNONYMOUS_CODING CG6569 UPSTREAM Cby	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	2033702	3R_2033702_SNP [dm3] 3R_6207980_SNP [dm6]	A	G	5.992e^-4	0.886	DOWNSTREAM Osi24 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19717844	2R_19717844_DEL [dm3] 2R_23830321_DEL [dm6]	TATATAT	T	6.002e^-4	0.886	INTRON CG5549
2L	18526787	2L_18526787_SNP [dm3] 2L_18526787_SNP [dm6]	T	C	6.008e^-4	0.886	INTRON CG10211	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4341679	2L_4341679_SNP [dm3] 2L_4341679_SNP [dm6]	T	C	6.023e^-4	0.886	SYNONYMOUS_CODING Atet INTRON Atet	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4388944	2L_4388944_SNP [dm3] 2L_4388944_SNP [dm6]	A	T	6.027e^-4	0.886	INTRON Tps1
3R	11610689	3R_11610689_SNP [dm3] 3R_15784967_SNP [dm6]	C	G	6.032e^-4	0.886	INTERGENIC
3R	21709121	3R_21709121_SNP [dm3] 3R_25883399_SNP [dm6]	C	T	6.043e^-4	0.886	INTRON SppL	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21709176	3R_21709176_SNP [dm3] 3R_25883454_SNP [dm6]	T	C	6.043e^-4	0.886	INTRON SppL	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9628433	3L_9628433_DEL [dm3] 3L_9635333_DEL [dm6]	TCAGTATT	T	6.048e^-4	0.886	INTRON fry
2R	17925113	2R_17925113_SNP [dm3] 2R_22037608_SNP [dm6]	T	A	6.057e^-4	0.886	START_GAINED CG34370 UTR_5_PRIME CG34370
2R	9430335	2R_9430335_DEL [dm3] 2R_13542830_DEL [dm6]	AA	A	6.060e^-4	0.886	INTRON CG6145
X	18838837	X_18838837_SNP [dm3] X_18944804_SNP [dm6]	G	A	6.062e^-4	0.886	INTRON CG43759
2R	6556450	2R_6556450_SNP [dm3] 2R_10668945_SNP [dm6]	C	A	6.065e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	15403579	3R_15403579_SNP [dm3] 3R_19577857_SNP [dm6]	T	G	6.095e^-4	0.886	INTRON Dys
3R	15403647	3R_15403647_SNP [dm3] 3R_19577925_SNP [dm6]	A	C	6.095e^-4	0.886	INTRON Dys
2L	8275155	2L_8275155_SNP [dm3] 2L_8275155_SNP [dm6]	T	A	6.103e^-4	0.886	UPSTREAM Btk29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	11476495	3R_11476495_DEL [dm3] 3R_15650773_DEL [dm6]	GT	G	6.110e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	19622102	3L_19622102_SNP [dm3] 3L_19629002_SNP [dm6]	C	A	6.113e^-4	0.886	INTRON wnd	transposable element FlyBase
2L	3829809	2L_3829809_SNP [dm3] 2L_3829809_SNP [dm6]	G	A	6.113e^-4	0.886	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2324022	3L_2324022_SNP [dm3] 3L_2324022_SNP [dm6]	G	T	6.117e^-4	0.886	INTRON MsR1
2R	11132660	2R_11132660_SNP [dm3] 2R_15245155_SNP [dm6]	A	G	6.119e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1
2L	10605157	2L_10605157_SNP [dm3] 2L_10605157_SNP [dm6]	T	C	6.126e^-4	0.886	INTRON Trim9
X	1890824	X_1890824_SNP [dm3] X_1996791_SNP [dm6]	G	T	6.126e^-4	0.886	INTRON Hr4
2L	13954150	2L_13954150_SNP [dm3] 2L_13954150_SNP [dm6]	A	G	6.142e^-4	0.886	INTRON Ance-3	TF binding site mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	7358214	2L_7358214_MNP [dm3] 2L_7358214_MNP [dm6]	GCA	TTT	6.146e^-4	0.886	INTERGENIC
2L	7358235	2L_7358235_SNP [dm3] 2L_7358235_SNP [dm6]	T	A	6.146e^-4	0.886	INTERGENIC
2L	7358239	2L_7358239_INS [dm3] 2L_7358239_INS [dm6]	A	ATTACA	6.146e^-4	0.886	INTERGENIC
3R	15325849	3R_15325849_SNP [dm3] 3R_19500127_SNP [dm6]	T	C	6.152e^-4	0.886	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9409057	2R_9409057_SNP [dm3] 2R_13521552_SNP [dm6]	G	C	6.175e^-4	0.886	UPSTREAM CG13331 INTRON Vmat
3L	15240887	3L_15240887_SNP [dm3] 3L_15247787_SNP [dm6]	A	C	6.181e^-4	0.886	INTERGENIC	TF binding site mE1_TFBS_sens
3R	11863394	3R_11863394_INS [dm3] 3R_16037672_INS [dm6]	T	TGT	6.201e^-4	0.886	INTRON pnr
3L	7345892	3L_7345892_SNP [dm3] 3L_7352792_SNP [dm6]	C	T	6.211e^-4	0.886	UTR_3_PRIME qm DOWNSTREAM CTCF INTRON qm
X	2141715	X_2141715_SNP [dm3] X_2247682_SNP [dm6]	T	A	6.229e^-4	0.886	UTR_3_PRIME crn DOWNSTREAM Or2a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3436541	3L_3436541_SNP [dm3] 3L_3436541_SNP [dm6]	A	C	6.231e^-4	0.886	INTRON eIF5B
3R	23976863	3R_23976863_SNP [dm3] 3R_28151141_SNP [dm6]	A	G	6.236e^-4	0.886	INTRON CG34354
3R	23976904	3R_23976904_SNP [dm3] 3R_28151182_SNP [dm6]	G	A	6.236e^-4	0.886	INTRON CG34354
3R	22310394	3R_22310394_SNP [dm3] 3R_26484672_SNP [dm6]	G	T	6.237e^-4	0.886	INTRON plum
X	16148938	X_16148938_SNP [dm3] X_16254905_SNP [dm6]	G	T	6.242e^-4	0.886	UPSTREAM snRNA:U5:14B DOWNSTREAM snRNA:U2:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16148940	X_16148940_SNP [dm3] X_16254907_SNP [dm6]	C	A	6.242e^-4	0.886	UPSTREAM snRNA:U5:14B DOWNSTREAM snRNA:U2:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3923752	X_3923752_SNP [dm3] X_4029719_SNP [dm6]	A	T	6.269e^-4	0.886	INTERGENIC
2L	4389738	2L_4389738_SNP [dm3] 2L_4389738_SNP [dm6]	C	T	6.272e^-4	0.886	INTRON Tps1	TF binding site mE1_TFBS_cad
3R	27177581	3R_27177581_SNP [dm3] 3R_31351859_SNP [dm6]	A	T	6.307e^-4	0.886	INTRON CG34347	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25616373	3R_25616373_SNP [dm3] 3R_29790651_SNP [dm6]	A	T	6.311e^-4	0.886	NON_SYNONYMOUS_CODING kay INTRON kay	TF binding site mE1_TFBS_cad
3R	26416506	3R_26416506_SNP [dm3] 3R_30590784_SNP [dm6]	A	G	6.313e^-4	0.886	INTERGENIC
X	3988540	X_3988540_SNP [dm3] X_4094507_SNP [dm6]	G	C	6.314e^-4	0.886	INTERGENIC
2L	756862	2L_756862_SNP [dm3] 2L_756862_SNP [dm6]	G	A	6.321e^-4	0.886	SYNONYMOUS_CODING GABA-B-R3 UTR_3_PRIME GABA-B-R3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19847392	3R_19847392_SNP [dm3] 3R_24021670_SNP [dm6]	C	T	6.321e^-4	0.886	INTRON KrT95D
2L	525446	2L_525446_SNP [dm3] 2L_525446_SNP [dm6]	T	C	6.326e^-4	0.886	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
X	9193296	X_9193296_DEL [dm3] X_9299263_DEL [dm6]	TT	T	6.334e^-4	0.886	INTRON lz
3L	11882609	3L_11882609_SNP [dm3] 3L_11889509_SNP [dm6]	T	A	6.338e^-4	0.886	UPSTREAM CG5897 INTRON CG44837
X	15178542	X_15178542_DEL [dm3] X_15284509_DEL [dm6]	GA	T	6.347e^-4	0.886	INTERGENIC
2L	6924614	2L_6924614_SNP [dm3] 2L_6924614_SNP [dm6]	A	G	6.392e^-4	0.886	INTRON Hrb27C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	7648987	X_7648987_SNP [dm3] X_7754954_SNP [dm6]	T	C	6.401e^-4	0.886	INTERGENIC
2R	12456774	2R_12456774_SNP [dm3] 2R_16569269_SNP [dm6]	A	C	6.405e^-4	0.886	SYNONYMOUS_CODING CG4945 DOWNSTREAM RpS15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20468202	3R_20468202_SNP [dm3] 3R_24642480_SNP [dm6]	T	C	6.406e^-4	0.886	NON_SYNONYMOUS_CODING puf	TF binding site mE1_TFBS_cad
3L	8470321	3L_8470321_SNP [dm3] 3L_8477221_SNP [dm6]	A	G	6.409e^-4	0.886	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad
X	1988168	X_1988168_SNP [dm3] X_2094135_SNP [dm6]	A	C	6.422e^-4	0.886	UPSTREAM csw DOWNSTREAM Unc-76 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	22897256	3R_22897256_SNP [dm3] 3R_27071534_SNP [dm6]	G	A	6.426e^-4	0.886	INTERGENIC
2L	11211999	2L_11211999_SNP [dm3] 2L_11211999_SNP [dm6]	C	T	6.432e^-4	0.886	INTRON ab	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	19227059	2L_19227059_SNP [dm3] 2L_19227059_SNP [dm6]	C	T	6.443e^-4	0.886	INTERGENIC
2R	19170786	2R_19170786_SNP [dm3] 2R_23283263_SNP [dm6]	C	T	6.452e^-4	0.886	SYNONYMOUS_CODING CG3124 UPSTREAM CG13541
X	6333610	X_6333610_SNP [dm3] X_6439577_SNP [dm6]	A	G	6.464e^-4	0.886	INTRON CG42340
2L	5240071	2L_5240071_SNP [dm3] 2L_5240071_SNP [dm6]	C	T	6.471e^-4	0.886	UPSTREAM tRNA:CR31971 INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15755710	3L_15755710_SNP [dm3] 3L_15762610_SNP [dm6]	C	A	6.483e^-4	0.886	INTERGENIC
3L	15703464	3L_15703464_SNP [dm3] 3L_15710364_SNP [dm6]	C	A	6.528e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	5305577	2R_5305577_SNP [dm3] 2R_9418072_SNP [dm6]	G	A	6.530e^-4	0.886	DOWNSTREAM wun2 INTERGENIC
3L	4093670	3L_4093670_SNP [dm3] 3L_4093670_SNP [dm6]	A	C	6.530e^-4	0.886	NON_SYNONYMOUS_CODING CG14990 DOWNSTREAM CG14989 & 1 other	TF binding site mE1_TFBS_cad
3R	26640415	3R_26640415_SNP [dm3] 3R_30814693_SNP [dm6]	A	C	6.530e^-4	0.886	INTRON cindr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9214708	3R_9214708_SNP [dm3] 3R_13388986_SNP [dm6]	T	C	6.530e^-4	0.886	UPSTREAM CG9799 DOWNSTREAM CCHa2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	4997941	3L_4997941_SNP [dm3] 3L_4997941_SNP [dm6]	T	A	6.538e^-4	0.886	INTRON Con
3L	19607420	3L_19607420_SNP [dm3] 3L_19614320_SNP [dm6]	A	G	6.548e^-4	0.886	SYNONYMOUS_CODING l_3_76BDm DOWNSTREAM CG9376
3L	17141911	3L_17141911_SNP [dm3] 3L_17148811_SNP [dm6]	T	A	6.559e^-4	0.886	UPSTREAM Rbp6 INTRON Rbp6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	8491614	3R_8491614_SNP [dm3] 3R_12665892_SNP [dm6]	A	C	6.563e^-4	0.886	UPSTREAM CG14395 INTRON CG14395
3L	15330384	3L_15330384_SNP [dm3] 3L_15337284_SNP [dm6]	C	T	6.572e^-4	0.886	SYNONYMOUS_CODING Toll-6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3941977	3L_3941977_SNP [dm3] 3L_3941977_SNP [dm6]	C	T	6.606e^-4	0.886	SYNONYMOUS_CODING CG10863 UPSTREAM CG14982 DOWNSTREAM CR43916
2R	15274354	2R_15274354_SNP [dm3] 2R_19386849_SNP [dm6]	C	T	6.606e^-4	0.886	NON_SYNONYMOUS_CODING CG10081 SPLICE_SITE_REGION CG10081
2R	10590181	2R_10590181_SNP [dm3] 2R_14702676_SNP [dm6]	A	G	6.614e^-4	0.886	INTRON mspo
X	12480824	X_12480824_SNP [dm3] X_12586791_SNP [dm6]	T	C	6.617e^-4	0.886	SYNONYMOUS_CODING LIMK1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8722633	2L_8722633_SNP [dm3] 2L_8722633_SNP [dm6]	C	T	6.628e^-4	0.886	INTRON raw
2L	8722707	2L_8722707_SNP [dm3] 2L_8722707_SNP [dm6]	C	T	6.628e^-4	0.886	INTRON raw
2L	8722778	2L_8722778_SNP [dm3] 2L_8722778_SNP [dm6]	T	G	6.628e^-4	0.886	INTRON raw
3R	14690592	3R_14690592_SNP [dm3] 3R_18864870_SNP [dm6]	A	G	6.637e^-4	0.886	INTERGENIC
X	7645403	X_7645403_SNP [dm3] X_7751370_SNP [dm6]	C	A	6.649e^-4	0.886	INTERGENIC
3R	15340472	3R_15340472_SNP [dm3] 3R_19514750_SNP [dm6]	G	T	6.660e^-4	0.886	INTRON Dys
X	17732439	X_17732439_SNP [dm3] X_17838406_SNP [dm6]	T	A	6.662e^-4	0.886	INTRON CG6398
3R	9213850	3R_9213850_SNP [dm3] 3R_13388128_SNP [dm6]	A	G	6.667e^-4	0.886	SYNONYMOUS_CODING CG9799 DOWNSTREAM CCHa2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9214315	3R_9214315_SNP [dm3] 3R_13388593_SNP [dm6]	A	G	6.667e^-4	0.886	SYNONYMOUS_CODING CG9799 DOWNSTREAM CCHa2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4001544	2L_4001544_SNP [dm3] 2L_4001544_SNP [dm6]	G	A	6.679e^-4	0.886	DOWNSTREAM CG43797 EXON CR45344	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	7059379	2L_7059379_SNP [dm3] 2L_7059379_SNP [dm6]	C	T	6.684e^-4	0.886	UTR_3_PRIME CG31907 DOWNSTREAM Mnn1 INTRON Mnn1	TF binding site mE1_TFBS_cad
X	18496877	X_18496877_SNP [dm3] X_18602844_SNP [dm6]	T	C	6.706e^-4	0.886	INTERGENIC
3R	21707938	3R_21707938_DEL [dm3] 3R_25882216_DEL [dm6]	AA	A	6.712e^-4	0.886	UTR_5_PRIME SppL UPSTREAM Tsp96F & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	21708308	3L_21708308_SNP [dm3] 3L_21715208_SNP [dm6]	T	C	6.712e^-4	0.886	INTERGENIC
X	4125124	X_4125124_SNP [dm3] X_4231091_SNP [dm6]	T	C	6.722e^-4	0.886	INTERGENIC
X	4125138	X_4125138_SNP [dm3] X_4231105_SNP [dm6]	C	G	6.722e^-4	0.886	INTERGENIC
3R	10961369	3R_10961369_SNP [dm3] 3R_15135647_SNP [dm6]	C	T	6.747e^-4	0.886	SYNONYMOUS_CODING CG6912	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	22101898	3L_22101898_SNP [dm3] 3L_22108798_SNP [dm6]	T	A	6.754e^-4	0.886	INTERGENIC
3L	11289046	3L_11289046_SNP [dm3] 3L_11295946_SNP [dm6]	A	G	6.760e^-4	0.886	UPSTREAM CG6175 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	4748283	3R_4748283_DEL [dm3] 3R_8922561_DEL [dm6]	AG	A	6.762e^-4	0.886	INTRON pyd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17686243	2R_17686243_SNP [dm3] 2R_21798738_SNP [dm6]	C	T	6.773e^-4	0.886	SYNONYMOUS_CODING CG18735 DOWNSTREAM CG4386	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1249260	2R_1249260_SNP [dm3] 2R_5361755_SNP [dm6]	T	G	6.776e^-4	0.886	SYNONYMOUS_CODING CG10417	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	8228334	2L_8228334_SNP [dm3] 2L_8228334_SNP [dm6]	T	G	6.778e^-4	0.886	INTRON Pvr
3L	3350889	3L_3350889_SNP [dm3] 3L_3350889_SNP [dm6]	T	G	6.787e^-4	0.886	INTRON kst
3R	25427014	3R_25427014_SNP [dm3] 3R_29601292_SNP [dm6]	A	G	6.794e^-4	0.886	UPSTREAM CG7568 INTRON alph
3L	1523763	3L_1523763_SNP [dm3] 3L_1523763_SNP [dm6]	C	A	6.833e^-4	0.886	SYNONYMOUS_CODING CG12090 DOWNSTREAM Psa
3L	1523781	3L_1523781_SNP [dm3] 3L_1523781_SNP [dm6]	G	A	6.833e^-4	0.886	SYNONYMOUS_CODING CG12090 DOWNSTREAM Psa
3R	27229675	3R_27229675_SNP [dm3] 3R_31403953_SNP [dm6]	T	C	6.842e^-4	0.886	SYNONYMOUS_CODING CG11337	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	12854242	2L_12854242_SNP [dm3] 2L_12854242_SNP [dm6]	C	A	6.843e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	8682902	3L_8682902_SNP [dm3] 3L_8689802_SNP [dm6]	C	T	6.850e^-4	0.886	INTERGENIC
2R	4541964	2R_4541964_SNP [dm3] 2R_8654459_SNP [dm6]	G	C	6.867e^-4	0.886	INTRON ptc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
2R	9811093	2R_9811093_SNP [dm3] 2R_13923588_SNP [dm6]	A	T	6.871e^-4	0.886	INTRON shot	TF binding site BDTNP1_TFBS_dl
X	7476212	X_7476212_DEL [dm3] X_7582179_DEL [dm6]	CC	C	6.885e^-4	0.886	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2825665	3L_2825665_SNP [dm3] 3L_2825665_SNP [dm6]	C	A	6.893e^-4	0.886	INTRON CG43444	TF binding site BDTNP1_TFBS_dl
2R	4470481	2R_4470481_SNP [dm3] 2R_8582976_SNP [dm6]	T	C	6.898e^-4	0.886	INTRON CG42326
3R	13547838	3R_13547838_SNP [dm3] 3R_17722116_SNP [dm6]	C	T	6.902e^-4	0.886	INTRON Pxt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10727385	2R_10727385_DEL [dm3] 2R_14839880_DEL [dm6]	TATGTTCATATGAAT...	T	6.906e^-4	0.886	INTERGENIC
2R	10727439	2R_10727439_SNP [dm3] 2R_14839934_SNP [dm6]	G	C	6.906e^-4	0.886	INTERGENIC
2R	10727635	2R_10727635_SNP [dm3] 2R_14840130_SNP [dm6]	G	A	6.906e^-4	0.886	INTERGENIC
3L	17128162	3L_17128162_DEL [dm3] 3L_17135062_DEL [dm6]	GC	G	6.906e^-4	0.886	INTRON Rbp6
3L	17128178	3L_17128178_SNP [dm3] 3L_17135078_SNP [dm6]	A	T	6.906e^-4	0.886	INTRON Rbp6
3R	16649821	3R_16649821_DEL [dm3] 3R_20824099_DEL [dm6]	AGA	A	6.906e^-4	0.886	UTR_5_PRIME CG17272 DOWNSTREAM RpS20 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
3R	16650126	3R_16650126_SNP [dm3] 3R_20824404_SNP [dm6]	C	T	6.906e^-4	0.886	UPSTREAM CG17272 DOWNSTREAM AdSS INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	16650155	3R_16650155_DEL [dm3] 3R_20824433_DEL [dm6]	CTAC	C	6.906e^-4	0.886	UPSTREAM CG17272 DOWNSTREAM AdSS INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	16650187	3R_16650187_SNP [dm3] 3R_20824465_SNP [dm6]	A	C	6.906e^-4	0.886	UPSTREAM CG17272 DOWNSTREAM AdSS INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2290253	3L_2290253_INS [dm3] 3L_2290253_INS [dm6]	T	TATAAAATATAAAT...	6.908e^-4	0.886	INTRON MsR2
3L	10687952	3L_10687952_SNP [dm3] 3L_10694852_SNP [dm6]	T	A	6.910e^-4	0.886	UPSTREAM CG6463 INTRON NijA
3R	23974407	3R_23974407_SNP [dm3] 3R_28148685_SNP [dm6]	C	G	6.921e^-4	0.886	INTRON CG34354
3R	14834109	3R_14834109_SNP [dm3] 3R_19008387_SNP [dm6]	C	A	6.929e^-4	0.886	INTRON gukh	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19242255	2R_19242255_SNP [dm3] 2R_23354732_SNP [dm6]	T	C	6.980e^-4	0.886	NON_SYNONYMOUS_CODING CG30409 UPSTREAM Rpi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16931471	2R_16931471_SNP [dm3] 2R_21043966_SNP [dm6]	T	C	6.988e^-4	0.886	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10319443	2R_10319443_SNP [dm3] 2R_14431938_SNP [dm6]	A	G	6.996e^-4	0.886	SYNONYMOUS_CODING phyl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13825379	X_13825379_SNP [dm3] X_13931346_SNP [dm6]	C	T	7.011e^-4	0.886	INTRON mamo
2L	16806882	2L_16806882_SNP [dm3] 2L_16806882_SNP [dm6]	A	C	7.016e^-4	0.886	UPSTREAM CG13272 INTRON CG13280 & 1 other
2L	16806903	2L_16806903_SNP [dm3] 2L_16806903_SNP [dm6]	T	C	7.016e^-4	0.886	UPSTREAM CG13272 INTRON CG13280 & 1 other
2L	16806922	2L_16806922_SNP [dm3] 2L_16806922_SNP [dm6]	C	T	7.016e^-4	0.886	UPSTREAM CG13272 INTRON CG13280 & 1 other
3L	10042398	3L_10042398_SNP [dm3] 3L_10049298_SNP [dm6]	G	A	7.029e^-4	0.886	INTRON dpr6
3L	10043205	3L_10043205_SNP [dm3] 3L_10050105_SNP [dm6]	C	T	7.029e^-4	0.886	INTRON dpr6
3L	10046235	3L_10046235_SNP [dm3] 3L_10053135_SNP [dm6]	G	A	7.029e^-4	0.886	INTRON dpr6
3L	10048387	3L_10048387_SNP [dm3] 3L_10055287_SNP [dm6]	C	T	7.029e^-4	0.886	INTRON dpr6
2L	2731308	2L_2731308_SNP [dm3] 2L_2731308_SNP [dm6]	A	C	7.029e^-4	0.886	INTRON CG31689
2R	10926204	2R_10926204_SNP [dm3] 2R_15038699_SNP [dm6]	C	T	7.038e^-4	0.886	SYNONYMOUS_CODING hbs
X	3923573	X_3923573_SNP [dm3] X_4029540_SNP [dm6]	C	T	7.039e^-4	0.886	INTERGENIC
3R	25669806	3R_25669806_SNP [dm3] 3R_29844084_SNP [dm6]	A	G	7.040e^-4	0.886	INTRON Cad99C
2R	11000152	2R_11000152_SNP [dm3] 2R_15112647_SNP [dm6]	A	G	7.040e^-4	0.886	INTERGENIC
X	2554105	X_2554105_SNP [dm3] X_2660072_SNP [dm6]	T	C	7.061e^-4	0.886	SYNONYMOUS_CODING sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19747119	3R_19747119_SNP [dm3] 3R_23921397_SNP [dm6]	C	G	7.063e^-4	0.886	INTRON sba	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	1876353	3R_1876353_SNP [dm3] 3R_6050631_SNP [dm6]	C	G	7.071e^-4	0.886	INTERGENIC	TF binding site mE1_TFBS_HSA
X	4632829	X_4632829_SNP [dm3] X_4738796_SNP [dm6]	A	C	7.078e^-4	0.886	INTERGENIC
X	13479550	X_13479550_SNP [dm3] X_13585517_SNP [dm6]	A	T	7.098e^-4	0.886	INTRON Tango13
3R	9222221	3R_9222221_SNP [dm3] 3R_13396499_SNP [dm6]	C	G	7.099e^-4	0.886	DOWNSTREAM CG14374 INTERGENIC
3R	9222223	3R_9222223_SNP [dm3] 3R_13396501_SNP [dm6]	T	A	7.099e^-4	0.886	DOWNSTREAM CG14374 INTERGENIC
2L	2647811	2L_2647811_SNP [dm3] 2L_2647811_SNP [dm6]	T	A	7.102e^-4	0.886	UPSTREAM CG43851 & 1 other DOWNSTREAM CG33125 INTERGENIC
3L	10088139	3L_10088139_SNP [dm3] 3L_10095039_SNP [dm6]	A	G	7.105e^-4	0.886	UPSTREAM CG32054 DOWNSTREAM CG42825 INTRON dpr6
3L	2840384	3L_2840384_DEL [dm3] 3L_2840384_DEL [dm6]	TAGTAAGGTTGGGATA...	C	7.118e^-4	0.886	INTRON CG43444
3R	27383767	3R_27383767_SNP [dm3] 3R_31558045_SNP [dm6]	A	T	7.123e^-4	0.886	INTRON nyo
3L	12335468	3L_12335468_SNP [dm3] 3L_12342368_SNP [dm6]	A	T	7.132e^-4	0.886	SPLICE_SITE_REGION CrzR INTRON CrzR
2L	3230598	2L_3230598_SNP [dm3] 2L_3230598_SNP [dm6]	A	T	7.134e^-4	0.886	INTERGENIC
3R	18589672	3R_18589672_SNP [dm3] 3R_22763950_SNP [dm6]	A	T	7.134e^-4	0.886	UPSTREAM CG4723 DOWNSTREAM CG4721 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad
2R	6032206	2R_6032206_SNP [dm3] 2R_10144701_SNP [dm6]	C	T	7.142e^-4	0.886	SYNONYMOUS_CODING CG18011
3L	705380	3L_705380_SNP [dm3] 3L_705380_SNP [dm6]	G	T	7.148e^-4	0.886	DOWNSTREAM CG13895 EXON CR44514
3L	2538327	3L_2538327_SNP [dm3] 3L_2538327_SNP [dm6]	A	T	7.157e^-4	0.886	INTRON Spn
X	10895120	X_10895120_SNP [dm3] X_11001087_SNP [dm6]	G	A	7.170e^-4	0.886	INTRON CG42339
2R	5792958	2R_5792958_SNP [dm3] 2R_9905453_SNP [dm6]	C	T	7.174e^-4	0.886	UPSTREAM FMRFa INTERGENIC	TF binding site mE1_TFBS_cnc
X	7638774	X_7638774_SNP [dm3] X_7744741_SNP [dm6]	C	T	7.176e^-4	0.886	INTERGENIC
2R	5364540	2R_5364540_SNP [dm3] 2R_9477035_SNP [dm6]	A	T	7.177e^-4	0.886	INTRON Camta	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	17598523	2L_17598523_SNP [dm3] 2L_17598523_SNP [dm6]	A	T	7.187e^-4	0.886	INTRON Sytalpha
3R	25555999	3R_25555999_SNP [dm3] 3R_29730277_SNP [dm6]	C	A	7.188e^-4	0.886	SYNONYMOUS_CODING Kul	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	12097905	2L_12097905_SNP [dm3] 2L_12097905_SNP [dm6]	A	G	7.191e^-4	0.886	UTR_5_PRIME Ced-12 DOWNSTREAM Mt2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk
2R	4273864	2R_4273864_DEL [dm3] 2R_8386359_DEL [dm6]	AA	A	7.193e^-4	0.886	INTRON pdm3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9334852	3L_9334852_SNP [dm3] 3L_9341752_SNP [dm6]	G	A	7.194e^-4	0.886	INTRON PGRP-LC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5335285	2L_5335285_SNP [dm3] 2L_5335285_SNP [dm6]	T	C	7.216e^-4	0.886	INTRON fusl
X	9201555	X_9201555_DEL [dm3] X_9307522_DEL [dm6]	AGTCCAAGCG	A	7.224e^-4	0.886	INTERGENIC
2R	13395720	2R_13395720_SNP [dm3] 2R_17508215_SNP [dm6]	C	T	7.231e^-4	0.886	SYNONYMOUS_CODING CG43164 UTR_3_PRIME CG43164 UPSTREAM CG34193 DOWNSTREAM CG43164	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11241632	3L_11241632_SNP [dm3] 3L_11248532_SNP [dm6]	C	T	7.240e^-4	0.886	UPSTREAM CR44715 EXON CR44717	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	8474998	2L_8474998_SNP [dm3] 2L_8474998_SNP [dm6]	G	A	7.251e^-4	0.886	INTRON d
X	2848864	X_2848864_SNP [dm3] X_2954831_SNP [dm6]	G	A	7.252e^-4	0.886	SYNONYMOUS_CODING rst INTRON kirre	TF binding site mE1_TFBS_cad
3L	15017691	3L_15017691_INS [dm3] 3L_15024591_INS [dm6]	C	CG	7.279e^-4	0.886	DOWNSTREAM CG32148 INTRON Sytbeta
3R	26090100	3R_26090100_DEL [dm3] 3R_30264378_DEL [dm6]	ACCGC	A	7.280e^-4	0.886	INTERGENIC
3R	18046972	3R_18046972_SNP [dm3] 3R_22221250_SNP [dm6]	A	G	7.296e^-4	0.886	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17767526	X_17767526_SNP [dm3] X_17873493_SNP [dm6]	A	C	7.297e^-4	0.886	INTRON mnb	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5784138	2R_5784138_SNP [dm3] 2R_9896633_SNP [dm6]	A	G	7.338e^-4	0.886	NON_SYNONYMOUS_CODING CG30007
3R	26544331	3R_26544331_SNP [dm3] 3R_30718609_SNP [dm6]	T	A	7.338e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	11133016	2R_11133016_SNP [dm3] 2R_15245511_SNP [dm6]	T	C	7.364e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	13383336	2R_13383336_SNP [dm3] 2R_17495831_SNP [dm6]	C	T	7.377e^-4	0.886	UTR_3_PRIME CG30103	TF binding site mE1_TFBS_cad
2L	10457119	2L_10457119_SNP [dm3] 2L_10457119_SNP [dm6]	A	G	7.386e^-4	0.886	UPSTREAM CG5322 & 1 other INTRON CG5322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14322609	3L_14322609_SNP [dm3] 3L_14329509_SNP [dm6]	C	T	7.388e^-4	0.886	NON_SYNONYMOUS_CODING CG13482 INTRON fz
X	15313071	X_15313071_SNP [dm3] X_15419038_SNP [dm6]	C	G	7.396e^-4	0.886	INTRON Cngl
3R	16738690	3R_16738690_SNP [dm3] 3R_20912968_SNP [dm6]	G	T	7.397e^-4	0.886	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	7840701	3L_7840701_SNP [dm3] 3L_7847601_SNP [dm6]	A	T	7.407e^-4	0.886	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
2L	8714935	2L_8714935_SNP [dm3] 2L_8714935_SNP [dm6]	A	C	7.407e^-4	0.886	UPSTREAM raw INTRON raw
3L	5699381	3L_5699381_SNP [dm3] 3L_5706281_SNP [dm6]	G	A	7.413e^-4	0.886	INTRON sif	TF binding site mE1_TFBS_cad
X	2393125	X_2393125_SNP [dm3] X_2499092_SNP [dm6]	A	T	7.431e^-4	0.886	INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	24013235	3R_24013235_SNP [dm3] 3R_28187513_SNP [dm6]	C	A	7.439e^-4	0.886	INTRON CG34354	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9322940	2R_9322940_SNP [dm3] 2R_13435435_SNP [dm6]	C	T	7.450e^-4	0.886	DOWNSTREAM Ser8 INTRON CG42321	TF binding site mE1_TFBS_chinmo
2L	16878409	2L_16878409_SNP [dm3] 2L_16878409_SNP [dm6]	C	A	7.456e^-4	0.886	UTR_3_PRIME CG32832 DOWNSTREAM CG32832 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	24040271	3R_24040271_SNP [dm3] 3R_28214549_SNP [dm6]	A	T	7.464e^-4	0.886	INTRON CG34354	TF binding site BDTNP1_TFBS_twi
3R	24040903	3R_24040903_SNP [dm3] 3R_28215181_SNP [dm6]	A	T	7.464e^-4	0.886	INTRON CG34354
3R	24042577	3R_24042577_SNP [dm3] 3R_28216855_SNP [dm6]	C	A	7.464e^-4	0.886	INTRON CG34354	TF binding site BDTNP1_TFBS_twi
2R	17686765	2R_17686765_SNP [dm3] 2R_21799260_SNP [dm6]	C	T	7.466e^-4	0.886	UPSTREAM CG18735 DOWNSTREAM CG4386 INTERGENIC
3R	15106148	3R_15106148_SNP [dm3] 3R_19280426_SNP [dm6]	T	C	7.468e^-4	0.886	UPSTREAM CR44173 INTERGENIC
3L	10687926	3L_10687926_DEL [dm3] 3L_10694826_DEL [dm6]	ACAATA	A	7.470e^-4	0.886	UPSTREAM CG6463 INTRON NijA
2R	13782550	2R_13782550_SNP [dm3] 2R_17895045_SNP [dm6]	T	C	7.475e^-4	0.886	UPSTREAM CG14491 & 1 other INTRON Elk	TF binding site BDTNP1_TFBS_twi
2R	19717831	2R_19717831_SNP [dm3] 2R_23830308_SNP [dm6]	A	G	7.476e^-4	0.886	INTRON CG5549
3R	26056545	3R_26056545_SNP [dm3] 3R_30230823_SNP [dm6]	G	A	7.477e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	12157629	X_12157629_SNP [dm3] X_12263596_SNP [dm6]	T	C	7.489e^-4	0.886	INTRON Ten-a
2L	12791167	2L_12791167_SNP [dm3] 2L_12791167_SNP [dm6]	T	G	7.502e^-4	0.886	INTERGENIC
2L	8707182	2L_8707182_SNP [dm3] 2L_8707182_SNP [dm6]	T	C	7.505e^-4	0.886	SYNONYMOUS_CODING CG9314 INTRON Hnf4
3L	13008439	3L_13008439_SNP [dm3] 3L_13015339_SNP [dm6]	G	A	7.507e^-4	0.886	UPSTREAM CG11267 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	14137150	3L_14137150_INS [dm3] 3L_14144050_INS [dm6]	G	GG	7.532e^-4	0.886	INTERGENIC	regulatory region REDfly_CRMs
2L	8493646	2L_8493646_SNP [dm3] 2L_8493646_SNP [dm6]	G	A	7.542e^-4	0.886	INTRON Dh31
X	17767501	X_17767501_SNP [dm3] X_17873468_SNP [dm6]	T	C	7.542e^-4	0.886	INTRON mnb	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	16265268	3L_16265268_SNP [dm3] 3L_16272168_SNP [dm6]	A	G	7.543e^-4	0.886	UPSTREAM CG13066 DOWNSTREAM CG13067 INTERGENIC
X	2610081	X_2610081_SNP [dm3] X_2716048_SNP [dm6]	G	A	7.543e^-4	0.886	NON_SYNONYMOUS_CODING CG2694	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	760731	3L_760731_SNP [dm3] 3L_760731_SNP [dm6]	G	C	7.554e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	9902789	3R_9902789_SNP [dm3] 3R_14077067_SNP [dm6]	A	T	7.567e^-4	0.886	INTRON foxo
2R	17787614	2R_17787614_SNP [dm3] 2R_21900109_SNP [dm6]	A	T	7.574e^-4	0.886	INTRON Fili	TF binding site BDTNP1_TFBS_dl
2R	17787615	2R_17787615_SNP [dm3] 2R_21900110_SNP [dm6]	T	A	7.574e^-4	0.886	INTRON Fili	TF binding site BDTNP1_TFBS_dl
3R	13547773	3R_13547773_SNP [dm3] 3R_17722051_SNP [dm6]	C	T	7.590e^-4	0.886	SYNONYMOUS_CODING Pxt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18116894	3L_18116894_SNP [dm3] 3L_18123794_SNP [dm6]	G	A	7.597e^-4	0.886	INTERGENIC
3R	15856969	3R_15856969_SNP [dm3] 3R_20031247_SNP [dm6]	G	A	7.597e^-4	0.886	START_GAINED trem UTR_5_PRIME trem UPSTREAM CG4936	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	17875306	X_17875306_SNP [dm3] X_17981273_SNP [dm6]	C	T	7.606e^-4	0.886	INTRON Sh
3R	22758009	3R_22758009_SNP [dm3] 3R_26932287_SNP [dm6]	C	T	7.614e^-4	0.886	INTRON sda
2L	4468380	2L_4468380_SNP [dm3] 2L_4468380_SNP [dm6]	A	T	7.621e^-4	0.886	DOWNSTREAM CG17840 INTRON ine	TF binding site mE1_TFBS_cad
2R	17588502	2R_17588502_SNP [dm3] 2R_21700997_SNP [dm6]	A	G	7.629e^-4	0.886	UPSTREAM HmgD INTRON HmgZ	TF binding site BDTNP1_TFBS_dl
2L	21272725	2L_21272725_SNP [dm3] 2L_21272725_SNP [dm6]	G	C	7.632e^-4	0.886	INTRON CG8671	TF binding site mE1_TFBS_kn transposable element FlyBase
3R	1783249	3R_1783249_SNP [dm3] 3R_5957527_SNP [dm6]	T	C	7.635e^-4	0.886	INTRON CG34113
2L	12310361	2L_12310361_SNP [dm3] 2L_12310361_SNP [dm6]	T	C	7.652e^-4	0.886	INTRON aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1061161	3L_1061161_SNP [dm3] 3L_1061161_SNP [dm6]	T	C	7.654e^-4	0.886	INTRON bab1
3R	15425198	3R_15425198_SNP [dm3] 3R_19599476_SNP [dm6]	A	G	7.654e^-4	0.886	UPSTREAM Cpr92A INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15425240	3R_15425240_SNP [dm3] 3R_19599518_SNP [dm6]	A	T	7.654e^-4	0.886	UPSTREAM Cpr92A INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1203391	2R_1203391_SNP [dm3] 2R_5315886_SNP [dm6]	T	A	7.660e^-4	0.886	INTRON sxc	transposable element FlyBase
3R	22223530	3R_22223530_SNP [dm3] 3R_26397808_SNP [dm6]	T	C	7.669e^-4	0.886	INTERGENIC
2L	8228276	2L_8228276_SNP [dm3] 2L_8228276_SNP [dm6]	A	G	7.669e^-4	0.886	INTRON Pvr
2R	2493418	2R_2493418_SNP [dm3] 2R_6605913_SNP [dm6]	T	A	7.693e^-4	0.886	INTRON jing	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5196075	3L_5196075_SNP [dm3] 3L_5202975_SNP [dm6]	A	G	7.700e^-4	0.886	INTRON shep
2L	8705424	2L_8705424_SNP [dm3] 2L_8705424_SNP [dm6]	C	A	7.704e^-4	0.886	UPSTREAM CG9314 INTRON Hnf4 EXON CR44992	TF binding site mE1_TFBS_HSA
3L	8737305	3L_8737305_INS [dm3] 3L_8744205_INS [dm6]	A	AT	7.708e^-4	0.886	INTRON Prm
2L	11866305	2L_11866305_SNP [dm3] 2L_11866305_SNP [dm6]	C	T	7.716e^-4	0.886	INTRON Pde1c
3R	22771930	3R_22771930_SNP [dm3] 3R_26946208_SNP [dm6]	A	G	7.728e^-4	0.886	DOWNSTREAM sda INTRON CG14252	TF binding site mE1_TFBS_HSA
3L	8141366	3L_8141366_DEL [dm3] 3L_8148266_DEL [dm6]	CC	G	7.732e^-4	0.886	INTRON CG13676
3L	8141385	3L_8141385_SNP [dm3] 3L_8148285_SNP [dm6]	C	T	7.732e^-4	0.886	INTRON CG13676
3L	17370691	3L_17370691_SNP [dm3] 3L_17377591_SNP [dm6]	C	T	7.734e^-4	0.886	INTRON Cad74A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	17370696	3L_17370696_SNP [dm3] 3L_17377596_SNP [dm6]	C	T	7.734e^-4	0.886	INTRON Cad74A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	11000136	2R_11000136_SNP [dm3] 2R_15112631_SNP [dm6]	C	T	7.735e^-4	0.886	INTERGENIC
3R	5980103	3R_5980103_SNP [dm3] 3R_10154381_SNP [dm6]	T	C	7.742e^-4	0.886	INTRON Invadolysin
3R	5980109	3R_5980109_SNP [dm3] 3R_10154387_SNP [dm6]	G	C	7.742e^-4	0.886	INTRON Invadolysin
3R	5980110	3R_5980110_SNP [dm3] 3R_10154388_SNP [dm6]	A	G	7.742e^-4	0.886	INTRON Invadolysin
3R	5980130	3R_5980130_SNP [dm3] 3R_10154408_SNP [dm6]	C	T	7.742e^-4	0.886	INTRON Invadolysin
X	17773649	X_17773649_SNP [dm3] X_17879616_SNP [dm6]	C	A	7.742e^-4	0.886	INTRON mnb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23245730	3R_23245730_SNP [dm3] 3R_27420008_SNP [dm6]	T	C	7.744e^-4	0.886	INTRON side
X	12942696	X_12942696_SNP [dm3] X_13048663_SNP [dm6]	C	A	7.748e^-4	0.886	INTRON rad
3L	20809670	3L_20809670_SNP [dm3] 3L_20816570_SNP [dm6]	G	A	7.748e^-4	0.886	UTR_5_PRIME Pka-R1 UPSTREAM CG3618 DOWNSTREAM Mst77F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7223966	3L_7223966_SNP [dm3] 3L_7230866_SNP [dm6]	C	T	7.748e^-4	0.886	INTERGENIC
3R	1839119	3R_1839119_SNP [dm3] 3R_6013397_SNP [dm6]	G	A	7.767e^-4	0.886	INTERGENIC
2R	9333421	2R_9333421_SNP [dm3] 2R_13445916_SNP [dm6]	C	T	7.768e^-4	0.886	SYNONYMOUS_CODING CG30062 UPSTREAM cnn INTRON cnn	TF binding site mE1_TFBS_HSA
3L	10612647	3L_10612647_SNP [dm3] 3L_10619547_SNP [dm6]	A	G	7.786e^-4	0.886	INTERGENIC
3L	2476454	3L_2476454_SNP [dm3] 3L_2476454_SNP [dm6]	G	A	7.786e^-4	0.886	SYNONYMOUS_CODING Cyp4d20 UPSTREAM CG16762 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	8903273	X_8903273_SNP [dm3] X_9009240_SNP [dm6]	T	C	7.787e^-4	0.886	INTRON rdgA & 1 other
3L	9661315	3L_9661315_SNP [dm3] 3L_9668215_SNP [dm6]	A	G	7.816e^-4	0.886	INTRON fry	TF binding site mE1_TFBS_cad
2R	4470480	2R_4470480_SNP [dm3] 2R_8582975_SNP [dm6]	T	A	7.832e^-4	0.886	INTRON CG42326
3L	9623330	3L_9623330_SNP [dm3] 3L_9630230_SNP [dm6]	C	T	7.850e^-4	0.886	NON_SYNONYMOUS_CODING CG8336	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	22035381	3L_22035381_SNP [dm3] 3L_22042281_SNP [dm6]	G	A	7.855e^-4	0.886	INTRON Oct-TyrR
3L	10273786	3L_10273786_SNP [dm3] 3L_10280686_SNP [dm6]	A	T	7.857e^-4	0.886	INTERGENIC
X	3192190	X_3192190_INS [dm3] X_3298157_INS [dm6]	A	AA	7.860e^-4	0.886	INTRON dnc	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	22917098	3R_22917098_SNP [dm3] 3R_27091376_SNP [dm6]	T	G	7.870e^-4	0.886	UPSTREAM Cpr97Eb INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22917101	3R_22917101_SNP [dm3] 3R_27091379_SNP [dm6]	C	A	7.870e^-4	0.886	UPSTREAM Cpr97Eb INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9282793	3R_9282793_SNP [dm3] 3R_13457071_SNP [dm6]	T	C	7.870e^-4	0.886	SYNONYMOUS_CODING CG14372 INTRON CR17025
3L	8410550	3L_8410550_SNP [dm3] 3L_8417450_SNP [dm6]	G	A	7.871e^-4	0.886	SYNONYMOUS_CODING CG32354	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16673309	3R_16673309_SNP [dm3] 3R_20847587_SNP [dm6]	C	T	7.888e^-4	0.886	SYNONYMOUS_CODING CG15696	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12704528	X_12704528_SNP [dm3] X_12810495_SNP [dm6]	G	A	7.907e^-4	0.886	INTRON Pde9
2R	4275883	2R_4275883_DEL [dm3] 2R_8388378_DEL [dm6]	TTAC	T	7.908e^-4	0.886	INTRON pdm3
X	15178453	X_15178453_DEL [dm3] X_15284420_DEL [dm6]	AA	A	7.910e^-4	0.886	INTERGENIC
X	15178521	X_15178521_DEL [dm3] X_15284488_DEL [dm6]	TT	T	7.910e^-4	0.886	INTERGENIC
2L	2020727	2L_2020727_SNP [dm3] 2L_2020727_SNP [dm6]	G	A	7.912e^-4	0.886	INTRON CG4238
3L	18010648	3L_18010648_SNP [dm3] 3L_18017548_SNP [dm6]	T	G	7.929e^-4	0.886	INTRON Eip75B
3R	15158138	3R_15158138_SNP [dm3] 3R_19332416_SNP [dm6]	A	G	7.929e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	25000102	3R_25000102_DEL [dm3] 3R_29174380_DEL [dm6]	AA	A	7.950e^-4	0.886	INTRON CG14509
3R	26806178	3R_26806178_SNP [dm3] 3R_30980456_SNP [dm6]	T	G	7.974e^-4	0.886	INTRON 5-HT7
2R	13404649	2R_13404649_SNP [dm3] 2R_17517144_SNP [dm6]	C	T	7.976e^-4	0.886	UTR_3_PRIME CG4853 DOWNSTREAM APC10
2R	11612400	2R_11612400_SNP [dm3] 2R_15724895_SNP [dm6]	C	A	7.977e^-4	0.886	INTERGENIC
3L	16547559	3L_16547559_SNP [dm3] 3L_16554459_SNP [dm6]	T	C	7.978e^-4	0.886	INTERGENIC
X	3099096	X_3099096_SNP [dm3] X_3205063_SNP [dm6]	A	G	7.987e^-4	0.886	INTRON dnc	TF binding site mE1_TFBS_inv
2R	17686495	2R_17686495_SNP [dm3] 2R_21798990_SNP [dm6]	G	C	7.987e^-4	0.886	SYNONYMOUS_CODING CG18735 DOWNSTREAM CG4386	TF binding site mE1_TFBS_HSA
2L	7097853	2L_7097853_INS [dm3] 2L_7097853_INS [dm6]	G	GGTGAGTAAAGCAGCAG...	7.988e^-4	0.886	DOWNSTREAM Pvf3 INTERGENIC
X	14489442	X_14489442_SNP [dm3] X_14595409_SNP [dm6]	C	G	8.014e^-4	0.886	INTRON CG9413
3L	4510273	3L_4510273_SNP [dm3] 3L_4510273_SNP [dm6]	T	G	8.029e^-4	0.886	DOWNSTREAM Tie INTERGENIC
X	1990054	X_1990054_SNP [dm3] X_2096021_SNP [dm6]	G	T	8.029e^-4	0.886	INTRON csw	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna
X	1990063	X_1990063_SNP [dm3] X_2096030_SNP [dm6]	T	G	8.029e^-4	0.886	INTRON csw	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna
X	1990065	X_1990065_SNP [dm3] X_2096032_SNP [dm6]	T	A	8.029e^-4	0.886	INTRON csw	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna
X	1990067	X_1990067_SNP [dm3] X_2096034_SNP [dm6]	T	A	8.029e^-4	0.886	INTRON csw	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3L	2678563	3L_2678563_SNP [dm3] 3L_2678563_SNP [dm6]	T	C	8.031e^-4	0.886	SYNONYMOUS_CODING Fife	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	18219477	2L_18219477_SNP [dm3] 2L_18219477_SNP [dm6]	T	A	8.033e^-4	0.886	INTRON CG42750
3L	6631271	3L_6631271_SNP [dm3] 3L_6638171_SNP [dm6]	G	T	8.048e^-4	0.886	INTERGENIC
3L	5196089	3L_5196089_DEL [dm3] 3L_5202989_DEL [dm6]	TG	T	8.059e^-4	0.886	INTRON shep
3L	5196092	3L_5196092_SNP [dm3] 3L_5202992_SNP [dm6]	G	A	8.059e^-4	0.886	INTRON shep
3L	9669483	3L_9669483_SNP [dm3] 3L_9676383_SNP [dm6]	T	A	8.092e^-4	0.886	UPSTREAM fry INTRON fry	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2678569	3L_2678569_SNP [dm3] 3L_2678569_SNP [dm6]	C	T	8.098e^-4	0.886	SYNONYMOUS_CODING Fife	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	14269286	3L_14269286_INS [dm3] 3L_14276186_INS [dm6]	A	AA	8.109e^-4	0.886	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18134495	3L_18134495_DEL [dm3] 3L_18141395_DEL [dm6]	GTTTGTAGTA	C	8.115e^-4	0.886	INTRON gk
3R	14155032	3R_14155032_SNP [dm3] 3R_18329310_SNP [dm6]	T	C	8.120e^-4	0.886	UPSTREAM CG31235 INTERGENIC
X	2554531	X_2554531_SNP [dm3] X_2660498_SNP [dm6]	G	A	8.140e^-4	0.886	SYNONYMOUS_CODING sgg INTRON sgg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18526662	2L_18526662_SNP [dm3] 2L_18526662_SNP [dm6]	T	C	8.150e^-4	0.886	INTRON CG10211
3R	27061538	3R_27061538_SNP [dm3] 3R_31235816_SNP [dm6]	T	C	8.159e^-4	0.886	UPSTREAM CG15564 DOWNSTREAM qless INTERGENIC
3L	993273	3L_993273_SNP [dm3] 3L_993273_SNP [dm6]	T	G	8.163e^-4	0.886	UTR_3_PRIME Glut1 UPSTREAM CG12038
2R	10134747	2R_10134747_SNP [dm3] 2R_14247242_SNP [dm6]	T	G	8.172e^-4	0.886	INTRON Mdr50
3R	26090085	3R_26090085_DEL [dm3] 3R_30264363_DEL [dm6]	CGA	C	8.196e^-4	0.886	INTERGENIC
3R	26090089	3R_26090089_DEL [dm3] 3R_30264367_DEL [dm6]	GT	G	8.196e^-4	0.886	INTERGENIC
3R	26090096	3R_26090096_MNP [dm3] 3R_30264374_MNP [dm6]	ACG	CAT	8.196e^-4	0.886	INTERGENIC
3L	8219978	3L_8219978_DEL [dm3] 3L_8226878_DEL [dm6]	AC	A	8.214e^-4	0.886	INTERGENIC
3L	2987996	3L_2987996_SNP [dm3] 3L_2987996_SNP [dm6]	T	A	8.222e^-4	0.886	INTERGENIC
3L	9602970	3L_9602970_SNP [dm3] 3L_9609870_SNP [dm6]	T	C	8.234e^-4	0.886	INTRON CG3280
2L	7358188	2L_7358188_SNP [dm3] 2L_7358188_SNP [dm6]	C	A	8.245e^-4	0.886	INTERGENIC
2L	7358236	2L_7358236_SNP [dm3] 2L_7358236_SNP [dm6]	G	T	8.245e^-4	0.886	INTERGENIC
3R	19992154	3R_19992154_SNP [dm3] 3R_24166432_SNP [dm6]	T	C	8.255e^-4	0.886	SYNONYMOUS_CODING Apc2	TF binding site mE1_TFBS_sens
3L	21837186	3L_21837186_SNP [dm3] 3L_21844086_SNP [dm6]	G	A	8.274e^-4	0.886	UPSTREAM mub INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
3R	3286382	3R_3286382_SNP [dm3] 3R_7460660_SNP [dm6]	A	C	8.275e^-4	0.886	INTERGENIC
3R	3286468	3R_3286468_SNP [dm3] 3R_7460746_SNP [dm6]	T	C	8.275e^-4	0.886	INTERGENIC
X	21157521	X_21157521_SNP [dm3] X_21286494_SNP [dm6]	C	T	8.275e^-4	0.886	INTRON CG1494
3R	1811469	3R_1811469_SNP [dm3] 3R_5985747_SNP [dm6]	C	T	8.275e^-4	0.886	INTERGENIC
2L	18019060	2L_18019060_SNP [dm3] 2L_18019060_SNP [dm6]	T	G	8.277e^-4	0.886	INTRON rdo
3R	26285227	3R_26285227_SNP [dm3] 3R_30459505_SNP [dm6]	C	G	8.294e^-4	0.886	UPSTREAM CDase & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3708471	2L_3708471_SNP [dm3] 2L_3708471_SNP [dm6]	G	A	8.305e^-4	0.886	INTRON cutlet	TF binding site mE1_TFBS_cad mE1_TFBS_HSA

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.277e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1177 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	4510294	3L_4510294_SNP [dm3] 3L_4510294_SNP [dm6]	A	T	5.600e^-7	0.525	DOWNSTREAM Tie INTERGENIC
2L	6712550	2L_6712550_SNP [dm3] 2L_6712550_SNP [dm6]	T	C	1.561e^-6	0.525	SYNONYMOUS_CODING AkhR	TF binding site mE1_TFBS_chinmo
3L	4510237	3L_4510237_SNP [dm3] 3L_4510237_SNP [dm6]	A	C	1.871e^-6	0.525	DOWNSTREAM Tie INTERGENIC
3L	4510273	3L_4510273_SNP [dm3] 3L_4510273_SNP [dm6]	T	G	2.842e^-6	0.525	DOWNSTREAM Tie INTERGENIC
2L	5389320	2L_5389320_SNP [dm3] 2L_5389320_SNP [dm6]	T	G	2.877e^-6	0.525	DOWNSTREAM CR44745 INTERGENIC
3L	4510046	3L_4510046_SNP [dm3] 3L_4510046_SNP [dm6]	A	T	2.877e^-6	0.525	DOWNSTREAM Tie INTERGENIC
3L	4510095	3L_4510095_DEL [dm3] 3L_4510095_DEL [dm6]	AC	A	2.877e^-6	0.525	DOWNSTREAM Tie INTERGENIC
3L	4510269	3L_4510269_SNP [dm3] 3L_4510269_SNP [dm6]	A	C	3.006e^-6	0.525	DOWNSTREAM Tie INTERGENIC
3L	4510228	3L_4510228_DEL [dm3] 3L_4510228_DEL [dm6]	AA	A	3.156e^-6	0.525	DOWNSTREAM Tie INTERGENIC
3L	4510234	3L_4510234_SNP [dm3] 3L_4510234_SNP [dm6]	C	T	3.156e^-6	0.525	DOWNSTREAM Tie INTERGENIC
3L	4510242	3L_4510242_SNP [dm3] 3L_4510242_SNP [dm6]	C	T	3.156e^-6	0.525	DOWNSTREAM Tie INTERGENIC
2L	12853909	2L_12853909_SNP [dm3] 2L_12853909_SNP [dm6]	G	A	3.820e^-6	0.561	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4510280	3L_4510280_SNP [dm3] 3L_4510280_SNP [dm6]	T	A	3.988e^-6	0.561	DOWNSTREAM Tie INTERGENIC
3L	12334191	3L_12334191_SNP [dm3] 3L_12341091_SNP [dm6]	G	A	6.673e^-6	0.869	INTRON CrzR
3L	10090859	3L_10090859_SNP [dm3] 3L_10097759_SNP [dm6]	C	G	7.486e^-6	0.869	SYNONYMOUS_CODING CG42825 INTRON dpr6
3L	15358542	3L_15358542_SNP [dm3] 3L_15365442_SNP [dm6]	T	C	7.601e^-6	0.869	INTERGENIC
2L	22001622	2L_22001622_SNP [dm3] 2L_22001622_SNP [dm6]	G	T	8.761e^-6	0.929	INTERGENIC
X	2417282	X_2417282_SNP [dm3] X_2523249_SNP [dm6]	G	C	9.427e^-6	0.929	INTRON trol
2L	12592527	2L_12592527_SNP [dm3] 2L_12592527_SNP [dm6]	T	A	1.176e^-5	0.929	INTRON nub
2L	6712556	2L_6712556_SNP [dm3] 2L_6712556_SNP [dm6]	C	A	1.349e^-5	0.929	SYNONYMOUS_CODING AkhR	TF binding site mE1_TFBS_chinmo
3L	4510239	3L_4510239_DEL [dm3] 3L_4510239_DEL [dm6]	AA	A	1.355e^-5	0.929	DOWNSTREAM Tie INTERGENIC
3L	5495165	3L_5495165_SNP [dm3] 3L_5502065_SNP [dm6]	A	T	1.438e^-5	0.929	UPSTREAM CR44519 INTERGENIC
2L	1093914	2L_1093914_SNP [dm3] 2L_1093914_SNP [dm6]	A	T	1.628e^-5	0.929	INTRON CG4629
2L	8704556	2L_8704556_SNP [dm3] 2L_8704556_SNP [dm6]	G	T	1.690e^-5	0.929	INTRON Hnf4 EXON CR44992
2R	5792958	2R_5792958_SNP [dm3] 2R_9905453_SNP [dm6]	C	T	1.698e^-5	0.929	UPSTREAM FMRFa INTERGENIC	TF binding site mE1_TFBS_cnc
2R	5300340	2R_5300340_SNP [dm3] 2R_9412835_SNP [dm6]	C	T	1.700e^-5	0.929	INTRON wun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12034658	2L_12034658_SNP [dm3] 2L_12034658_SNP [dm6]	G	C	1.798e^-5	0.929	NON_SYNONYMOUS_CODING CG18788 DOWNSTREAM dmGlut	TF binding site mE1_TFBS_chinmo
2R	9447387	2R_9447387_SNP [dm3] 2R_13559882_SNP [dm6]	C	T	1.987e^-5	0.929	UTR_3_PRIME CG13334	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	13745579	3R_13745579_SNP [dm3] 3R_17919857_SNP [dm6]	G	A	1.992e^-5	0.929	UTR_5_PRIME cpo	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	3917860	X_3917860_SNP [dm3] X_4023827_SNP [dm6]	C	G	2.005e^-5	0.929	INTERGENIC
2L	1093911	2L_1093911_SNP [dm3] 2L_1093911_SNP [dm6]	C	A	2.130e^-5	0.929	INTRON CG4629
3L	10049471	3L_10049471_SNP [dm3] 3L_10056371_SNP [dm6]	T	A	2.333e^-5	0.929	INTRON dpr6
2L	12797132	2L_12797132_SNP [dm3] 2L_12797132_SNP [dm6]	G	C	2.424e^-5	0.929	INTERGENIC
2L	12797215	2L_12797215_SNP [dm3] 2L_12797215_SNP [dm6]	C	T	2.424e^-5	0.929	INTERGENIC
2L	21779505	2L_21779505_SNP [dm3] 2L_21779505_SNP [dm6]	T	C	2.463e^-5	0.929	INTRON CG31612
2L	6791226	2L_6791226_SNP [dm3] 2L_6791226_SNP [dm6]	G	A	2.739e^-5	0.929	SYNONYMOUS_CODING nrv2	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
2L	10671508	2L_10671508_SNP [dm3] 2L_10671508_SNP [dm6]	G	T	2.784e^-5	0.929	DOWNSTREAM CG31871 INTERGENIC
2L	19086369	2L_19086369_SNP [dm3] 2L_19086369_SNP [dm6]	T	C	2.837e^-5	0.929	INTRON Lim3
2R	16984987	2R_16984987_SNP [dm3] 2R_21097482_SNP [dm6]	T	C	2.868e^-5	0.929	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	1906463	3R_1906463_SNP [dm3] 3R_6080741_SNP [dm6]	G	A	2.971e^-5	0.929	INTERGENIC
3L	4510261	3L_4510261_SNP [dm3] 3L_4510261_SNP [dm6]	G	A	3.212e^-5	0.929	DOWNSTREAM Tie INTERGENIC
X	4836959	X_4836959_SNP [dm3] X_4942926_SNP [dm6]	T	C	3.257e^-5	0.929	INTRON Ptp4E	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	19045628	3R_19045628_DEL [dm3] 3R_23219906_DEL [dm6]	AATA	A	3.341e^-5	0.929	INTRON cnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
3R	11642532	3R_11642532_SNP [dm3] 3R_15816810_SNP [dm6]	G	A	3.506e^-5	0.929	INTRON alpha-Man-IIb
3L	5571822	3L_5571822_SNP [dm3] 3L_5578722_SNP [dm6]	A	G	3.638e^-5	0.929	INTERGENIC
3L	2463548	3L_2463548_SNP [dm3] 3L_2463548_SNP [dm6]	A	C	3.667e^-5	0.929	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	652065	X_652065_SNP [dm3] X_758032_SNP [dm6]	A	C	3.754e^-5	0.929	SYNONYMOUS_CODING CG5254	TF binding site mE1_TFBS_sens
3R	1839119	3R_1839119_SNP [dm3] 3R_6013397_SNP [dm6]	G	A	3.863e^-5	0.929	INTERGENIC
3L	4510517	3L_4510517_SNP [dm3] 3L_4510517_SNP [dm6]	A	T	3.910e^-5	0.929	DOWNSTREAM Tie INTERGENIC
2R	18037039	2R_18037039_SNP [dm3] 2R_22149534_SNP [dm6]	C	T	3.921e^-5	0.929	INTRON a
3L	10664076	3L_10664076_SNP [dm3] 3L_10670976_SNP [dm6]	G	A	3.941e^-5	0.929	INTRON simj	TF binding site BDTNP1_TFBS_dl
3L	4510263	3L_4510263_SNP [dm3] 3L_4510263_SNP [dm6]	A	G	3.957e^-5	0.929	DOWNSTREAM Tie INTERGENIC
2R	7675060	2R_7675060_SNP [dm3] 2R_11787555_SNP [dm6]	C	G	3.981e^-5	0.929	DOWNSTREAM Ir48c INTRON ths
3R	19045479	3R_19045479_DEL [dm3] 3R_23219757_DEL [dm6]	CAACAC	C	4.350e^-5	0.929	INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	989375	2L_989375_SNP [dm3] 2L_989375_SNP [dm6]	A	G	4.403e^-5	0.929	INTRON CR44801	TF binding site mE1_TFBS_chinmo
3L	14206427	3L_14206427_SNP [dm3] 3L_14213327_SNP [dm6]	T	C	4.458e^-5	0.929	INTRON nuf	TF binding site mE1_TFBS_bab1
X	6817431	X_6817431_SNP [dm3] X_6923398_SNP [dm6]	A	G	4.465e^-5	0.929	INTRON CG14431
3L	5699381	3L_5699381_SNP [dm3] 3L_5706281_SNP [dm6]	G	A	4.481e^-5	0.929	INTRON sif	TF binding site mE1_TFBS_cad
3R	9317188	3R_9317188_SNP [dm3] 3R_13491466_SNP [dm6]	G	A	4.483e^-5	0.929	INTERGENIC	TF binding site mE1_TFBS_inv
2R	12796185	2R_12796185_SNP [dm3] 2R_16908680_SNP [dm6]	C	G	4.516e^-5	0.929	INTERGENIC
3L	5750613	3L_5750613_SNP [dm3] 3L_5757513_SNP [dm6]	C	A	4.668e^-5	0.929	SYNONYMOUS_CODING Ubp64E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9971944	2R_9971944_SNP [dm3] 2R_14084439_SNP [dm6]	G	T	4.749e^-5	0.929	INTRON Prosap	TF binding site mE1_TFBS_bab1
3R	21833482	3R_21833482_SNP [dm3] 3R_26007760_SNP [dm6]	T	A	4.768e^-5	0.929	UPSTREAM CR45039 INTERGENIC
3R	21833489	3R_21833489_SNP [dm3] 3R_26007767_SNP [dm6]	A	C	4.768e^-5	0.929	UPSTREAM CR45039 INTERGENIC
3R	21833559	3R_21833559_SNP [dm3] 3R_26007837_SNP [dm6]	C	T	4.768e^-5	0.929	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21833560	3R_21833560_SNP [dm3] 3R_26007838_SNP [dm6]	T	A	4.768e^-5	0.929	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21833604	3R_21833604_SNP [dm3] 3R_26007882_SNP [dm6]	T	C	4.768e^-5	0.929	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21833614	3R_21833614_SNP [dm3] 3R_26007892_SNP [dm6]	G	A	4.768e^-5	0.929	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21833701	3R_21833701_SNP [dm3] 3R_26007979_SNP [dm6]	T	C	4.768e^-5	0.929	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21834710	3R_21834710_SNP [dm3] 3R_26008988_SNP [dm6]	T	A	4.768e^-5	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21834859	3R_21834859_SNP [dm3] 3R_26009137_SNP [dm6]	A	C	4.768e^-5	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	12034656	2L_12034656_SNP [dm3] 2L_12034656_SNP [dm6]	A	T	4.806e^-5	0.929	NON_SYNONYMOUS_CODING CG18788 DOWNSTREAM dmGlut	TF binding site mE1_TFBS_chinmo
2L	22002842	2L_22002842_SNP [dm3] 2L_22002842_SNP [dm6]	T	C	4.836e^-5	0.929	INTERGENIC
3R	8491422	3R_8491422_SNP [dm3] 3R_12665700_SNP [dm6]	G	A	4.877e^-5	0.929	INTRON CG14395
3R	19045456	3R_19045456_SNP [dm3] 3R_23219734_SNP [dm6]	A	G	4.935e^-5	0.929	INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	19045461	3R_19045461_INS [dm3] 3R_23219739_INS [dm6]	G	GAAG	4.935e^-5	0.929	INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	19045636	3R_19045636_SNP [dm3] 3R_23219914_SNP [dm6]	A	C	4.935e^-5	0.929	INTRON cnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
3L	10577037	3L_10577037_SNP [dm3] 3L_10583937_SNP [dm6]	G	C	5.038e^-5	0.929	INTRON A2bp1
3R	21834861	3R_21834861_SNP [dm3] 3R_26009139_SNP [dm6]	C	T	5.278e^-5	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	6791648	2L_6791648_SNP [dm3] 2L_6791648_SNP [dm6]	A	G	5.279e^-5	0.929	INTRON nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15437605	3L_15437605_SNP [dm3] 3L_15444505_SNP [dm6]	T	C	5.343e^-5	0.929	INTERGENIC
3L	3112577	3L_3112577_SNP [dm3] 3L_3112577_SNP [dm6]	T	A	5.393e^-5	0.929	INTRON CG45067
X	16359560	X_16359560_SNP [dm3] X_16465527_SNP [dm6]	G	C	5.429e^-5	0.929	INTRON para
2R	7675103	2R_7675103_SNP [dm3] 2R_11787598_SNP [dm6]	T	C	5.454e^-5	0.929	DOWNSTREAM Ir48c INTRON ths
2R	13870961	2R_13870961_SNP [dm3] 2R_17983456_SNP [dm6]	C	G	5.527e^-5	0.929	INTRON dpr13
2L	723842	2L_723842_SNP [dm3] 2L_723842_SNP [dm6]	A	T	5.610e^-5	0.929	INTERGENIC
3L	15025216	3L_15025216_SNP [dm3] 3L_15032116_SNP [dm6]	T	C	5.702e^-5	0.929	INTRON Sytbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9965089	2R_9965089_SNP [dm3] 2R_14077584_SNP [dm6]	T	C	5.835e^-5	0.929	INTRON Prosap
2R	18037109	2R_18037109_SNP [dm3] 2R_22149604_SNP [dm6]	A	C	5.895e^-5	0.929	INTRON a
2R	6783794	2R_6783794_SNP [dm3] 2R_10896289_SNP [dm6]	A	G	5.923e^-5	0.929	SYNONYMOUS_CODING CG12942 DOWNSTREAM CG7712	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11642535	3R_11642535_DEL [dm3] 3R_15816813_DEL [dm6]	GG	G	6.048e^-5	0.929	INTRON alpha-Man-IIb
2L	12797333	2L_12797333_SNP [dm3] 2L_12797333_SNP [dm6]	C	A	6.103e^-5	0.929	INTERGENIC
2L	10891638	2L_10891638_SNP [dm3] 2L_10891638_SNP [dm6]	T	C	6.227e^-5	0.929	INTERGENIC
2L	10891640	2L_10891640_SNP [dm3] 2L_10891640_SNP [dm6]	G	A	6.227e^-5	0.929	INTERGENIC
2R	9965059	2R_9965059_SNP [dm3] 2R_14077554_SNP [dm6]	T	C	6.347e^-5	0.929	INTRON Prosap
3L	9012071	3L_9012071_SNP [dm3] 3L_9018971_SNP [dm6]	C	G	6.512e^-5	0.929	UTR_5_PRIME Doc2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3446342	3L_3446342_SNP [dm3] 3L_3446342_SNP [dm6]	A	T	6.686e^-5	0.929	INTRON eIF5B
3L	3446349	3L_3446349_SNP [dm3] 3L_3446349_SNP [dm6]	G	A	6.686e^-5	0.929	INTRON eIF5B
2L	6828146	2L_6828146_SNP [dm3] 2L_6828146_SNP [dm6]	T	C	6.800e^-5	0.929	INTRON sens-2	TF binding site mE1_TFBS_cad
X	22006219	X_22006219_SNP [dm3] X_22604383_SNP [dm6]	T	A	6.957e^-5	0.929	INTRON Cda4
3R	21835402	3R_21835402_SNP [dm3] 3R_26009680_SNP [dm6]	T	C	6.966e^-5	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3L	10134846	3L_10134846_SNP [dm3] 3L_10141746_SNP [dm6]	C	T	7.025e^-5	0.929	INTERGENIC
3R	10687044	3R_10687044_SNP [dm3] 3R_14861322_SNP [dm6]	C	A	7.366e^-5	0.929	INTRON btsz
3L	13300473	3L_13300473_SNP [dm3] 3L_13307373_SNP [dm6]	A	C	7.501e^-5	0.929	INTERGENIC
3R	21833619	3R_21833619_INS [dm3] 3R_26007897_INS [dm6]	A	AGCTA	7.663e^-5	0.929	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9429857	2R_9429857_SNP [dm3] 2R_13542352_SNP [dm6]	G	A	7.861e^-5	0.929	SYNONYMOUS_CODING CG6145 INTRON CG6145
2L	21737704	2L_21737704_SNP [dm3] 2L_21737704_SNP [dm6]	T	C	7.950e^-5	0.929	INTERGENIC
3R	21835230	3R_21835230_SNP [dm3] 3R_26009508_SNP [dm6]	T	G	8.006e^-5	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_sens
3R	21834108	3R_21834108_SNP [dm3] 3R_26008386_SNP [dm6]	T	C	8.110e^-5	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5986926	3L_5986926_SNP [dm3] 3L_5993826_SNP [dm6]	G	T	8.294e^-5	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4836881	X_4836881_INS [dm3] X_4942848_INS [dm6]	T	TT	8.403e^-5	0.929	INTRON Ptp4E	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	8275851	2L_8275851_SNP [dm3] 2L_8275851_SNP [dm6]	A	G	8.531e^-5	0.929	INTRON Btk29A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	893057	3L_893057_SNP [dm3] 3L_893057_SNP [dm6]	A	G	8.564e^-5	0.929	UTR_3_PRIME CG32479
3R	21069452	3R_21069452_SNP [dm3] 3R_25243730_SNP [dm6]	A	G	8.570e^-5	0.929	SYNONYMOUS_CODING bam DOWNSTREAM CG11854
X	4538548	X_4538548_SNP [dm3] X_4644515_SNP [dm6]	A	T	8.603e^-5	0.929	UPSTREAM CG3081 DOWNSTREAM HLH4C INTRON CG3062
2L	3481317	2L_3481317_SNP [dm3] 2L_3481317_SNP [dm6]	C	T	8.652e^-5	0.929	SYNONYMOUS_CODING CG15414	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23728354	3R_23728354_SNP [dm3] 3R_27902632_SNP [dm6]	G	A	8.962e^-5	0.929	INTRON CG34353
X	7502993	X_7502993_INS [dm3] X_7608960_INS [dm6]	A	AA	8.970e^-5	0.929	UPSTREAM ct INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	5401873	3L_5401873_DEL [dm3] 3L_5408773_DEL [dm6]	TT	T	9.260e^-5	0.929	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	13128677	X_13128677_SNP [dm3] X_13234644_SNP [dm6]	A	G	9.389e^-5	0.929	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	4837031	X_4837031_SNP [dm3] X_4942998_SNP [dm6]	T	C	9.583e^-5	0.929	INTRON Ptp4E	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	5956154	2R_5956154_SNP [dm3] 2R_10068649_SNP [dm6]	G	A	9.840e^-5	0.929	UTR_5_PRIME cdc2rk UPSTREAM CG12920	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	13773128	2L_13773128_SNP [dm3] 2L_13773128_SNP [dm6]	T	A	1.003e^-4	0.929	UPSTREAM CG43376 INTRON TM9SF4
2R	6787192	2R_6787192_SNP [dm3] 2R_10899687_SNP [dm6]	C	G	1.029e^-4	0.929	UPSTREAM Rpb5 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5401357	3L_5401357_SNP [dm3] 3L_5408257_SNP [dm6]	A	T	1.061e^-4	0.929	INTERGENIC
2R	10032829	2R_10032829_SNP [dm3] 2R_14145324_SNP [dm6]	T	C	1.065e^-4	0.929	DOWNSTREAM mir-989 INTERGENIC
3L	4509123	3L_4509123_SNP [dm3] 3L_4509123_SNP [dm6]	A	C	1.074e^-4	0.929	UPSTREAM NT1 INTERGENIC
3R	27061538	3R_27061538_SNP [dm3] 3R_31235816_SNP [dm6]	T	C	1.091e^-4	0.929	UPSTREAM CG15564 DOWNSTREAM qless INTERGENIC
3L	1721518	3L_1721518_SNP [dm3] 3L_1721518_SNP [dm6]	A	G	1.097e^-4	0.929	NON_SYNONYMOUS_CODING CG18171 INTRON drpr	TF binding site mE1_TFBS_sens
2R	8562807	2R_8562807_SNP [dm3] 2R_12675302_SNP [dm6]	T	G	1.101e^-4	0.929	SYNONYMOUS_CODING CG42708 UPSTREAM CG42708 INTRON CG42708
3L	8959780	3L_8959780_SNP [dm3] 3L_8966680_SNP [dm6]	A	C	1.114e^-4	0.929	UPSTREAM CG5021 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16359482	X_16359482_SNP [dm3] X_16465449_SNP [dm6]	A	G	1.114e^-4	0.929	INTRON para
2R	12796016	2R_12796016_SNP [dm3] 2R_16908511_SNP [dm6]	T	C	1.115e^-4	0.929	INTERGENIC
3R	19847516	3R_19847516_SNP [dm3] 3R_24021794_SNP [dm6]	C	T	1.117e^-4	0.929	INTRON KrT95D
X	6618820	X_6618820_SNP [dm3] X_6724787_SNP [dm6]	G	T	1.137e^-4	0.929	INTRON CG3168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz
X	6619471	X_6619471_SNP [dm3] X_6725438_SNP [dm6]	G	T	1.137e^-4	0.929	INTRON CG3168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_D mE1_TFBS_HSA
3L	2462011	3L_2462011_SNP [dm3] 3L_2462011_SNP [dm6]	T	C	1.138e^-4	0.929	UPSTREAM CG45186 INTRON CG45186
3L	3446334	3L_3446334_SNP [dm3] 3L_3446334_SNP [dm6]	G	A	1.151e^-4	0.929	INTRON eIF5B
3L	12570004	3L_12570004_SNP [dm3] 3L_12576904_SNP [dm6]	C	T	1.179e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10032706	2R_10032706_SNP [dm3] 2R_14145201_SNP [dm6]	A	T	1.180e^-4	0.929	DOWNSTREAM mir-989 INTERGENIC
3R	10395319	3R_10395319_SNP [dm3] 3R_14569597_SNP [dm6]	T	C	1.193e^-4	0.929	SYNONYMOUS_CODING Cys UPSTREAM CG8066 DOWNSTREAM CG7987 EXON CR44095	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	6535088	X_6535088_DEL [dm3] X_6641055_DEL [dm6]	ACAA	A	1.200e^-4	0.929	INTRON pigs
2R	10601092	2R_10601092_SNP [dm3] 2R_14713587_SNP [dm6]	C	A	1.209e^-4	0.929	UTR_5_PRIME mspo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	7066130	2R_7066130_SNP [dm3] 2R_11178625_SNP [dm6]	A	G	1.249e^-4	0.929	INTRON shn	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	19847392	3R_19847392_SNP [dm3] 3R_24021670_SNP [dm6]	C	T	1.294e^-4	0.929	INTRON KrT95D
2L	4057043	2L_4057043_SNP [dm3] 2L_4057043_SNP [dm6]	T	G	1.324e^-4	0.929	INTRON ed	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	21643793	3L_21643793_SNP [dm3] 3L_21650693_SNP [dm6]	T	C	1.324e^-4	0.929	INTRON CG43980
3R	18375084	3R_18375084_SNP [dm3] 3R_22549362_SNP [dm6]	G	A	1.337e^-4	0.929	DOWNSTREAM CR44062 INTERGENIC
2L	14171807	2L_14171807_INS [dm3] 2L_14171807_INS [dm6]	C	CC	1.338e^-4	0.929	INTRON CG43333
2L	14171825	2L_14171825_SNP [dm3] 2L_14171825_SNP [dm6]	C	T	1.338e^-4	0.929	INTRON CG43333
2L	9457782	2L_9457782_SNP [dm3] 2L_9457782_SNP [dm6]	A	G	1.345e^-4	0.929	INTRON numb
3R	18597699	3R_18597699_SNP [dm3] 3R_22771977_SNP [dm6]	C	G	1.372e^-4	0.929	UPSTREAM CG43094 & 1 other INTRON Usp12-46 & 1 other
3L	21837186	3L_21837186_SNP [dm3] 3L_21844086_SNP [dm6]	G	A	1.385e^-4	0.929	UPSTREAM mub INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
X	3917903	X_3917903_INS [dm3] X_4023870_INS [dm6]	A	ACA	1.386e^-4	0.929	INTERGENIC
3L	15347787	3L_15347787_SNP [dm3] 3L_15354687_SNP [dm6]	C	T	1.390e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6791208	2L_6791208_SNP [dm3] 2L_6791208_SNP [dm6]	C	G	1.425e^-4	0.929	SYNONYMOUS_CODING nrv2	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
2L	7438616	2L_7438616_SNP [dm3] 2L_7438616_SNP [dm6]	G	A	1.471e^-4	0.929	INTRON CG5973	TF binding site BDTNP1_TFBS_dl
2R	12796193	2R_12796193_SNP [dm3] 2R_16908688_SNP [dm6]	G	T	1.475e^-4	0.929	INTERGENIC
3L	3989655	3L_3989655_SNP [dm3] 3L_3989655_SNP [dm6]	A	T	1.480e^-4	0.929	UTR_3_PRIME scrt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14077787	3L_14077787_SNP [dm3] 3L_14084687_SNP [dm6]	T	A	1.505e^-4	0.929	NON_SYNONYMOUS_CODING CG8100
2R	13395537	2R_13395537_SNP [dm3] 2R_17508032_SNP [dm6]	T	C	1.506e^-4	0.929	SYNONYMOUS_CODING CG43164 UTR_3_PRIME CG43164 UPSTREAM CG34193 DOWNSTREAM CG43164	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13519564	2L_13519564_SNP [dm3] 2L_13519564_SNP [dm6]	G	A	1.529e^-4	0.929	INTRON B4
2L	15823481	2L_15823481_SNP [dm3] 2L_15823481_SNP [dm6]	A	G	1.547e^-4	0.929	UPSTREAM CR44601 INTERGENIC
2L	723984	2L_723984_SNP [dm3] 2L_723984_SNP [dm6]	G	C	1.553e^-4	0.929	INTERGENIC
2L	9707509	2L_9707509_SNP [dm3] 2L_9707509_SNP [dm6]	T	A	1.559e^-4	0.929	INTRON pelo
X	704565	X_704565_SNP [dm3] X_810532_SNP [dm6]	C	T	1.566e^-4	0.929	SYNONYMOUS_CODING CG43867	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	704628	X_704628_SNP [dm3] X_810595_SNP [dm6]	T	C	1.566e^-4	0.929	SYNONYMOUS_CODING CG43867	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3961762	3L_3961762_SNP [dm3] 3L_3961762_SNP [dm6]	T	C	1.568e^-4	0.929	SYNONYMOUS_CODING CG12605
3R	10687131	3R_10687131_SNP [dm3] 3R_14861409_SNP [dm6]	C	T	1.575e^-4	0.929	INTRON btsz
3R	21833484	3R_21833484_SNP [dm3] 3R_26007762_SNP [dm6]	A	G	1.575e^-4	0.929	UPSTREAM CR45039 INTERGENIC
3R	21833714	3R_21833714_SNP [dm3] 3R_26007992_SNP [dm6]	A	G	1.575e^-4	0.929	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21834700	3R_21834700_SNP [dm3] 3R_26008978_SNP [dm6]	C	G	1.575e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21834702	3R_21834702_SNP [dm3] 3R_26008980_SNP [dm6]	A	G	1.575e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21834717	3R_21834717_SNP [dm3] 3R_26008995_SNP [dm6]	A	G	1.575e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21834722	3R_21834722_SNP [dm3] 3R_26009000_SNP [dm6]	T	A	1.575e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21834724	3R_21834724_SNP [dm3] 3R_26009002_SNP [dm6]	G	A	1.575e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14934401	3R_14934401_SNP [dm3] 3R_19108679_SNP [dm6]	T	C	1.596e^-4	0.929	INTRON CG6040
X	6618193	X_6618193_SNP [dm3] X_6724160_SNP [dm6]	A	G	1.633e^-4	0.929	INTRON CG3168
2L	131170	2L_131170_SNP [dm3] 2L_131170_SNP [dm6]	C	G	1.653e^-4	0.929	UPSTREAM CG3164 & 1 other INTRON CG11455	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	131233	2L_131233_SNP [dm3] 2L_131233_SNP [dm6]	T	G	1.653e^-4	0.929	UPSTREAM CG3164 & 1 other INTRON CG11455	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2L	6351358	2L_6351358_SNP [dm3] 2L_6351358_SNP [dm6]	T	A	1.659e^-4	0.929	UPSTREAM CG9498 DOWNSTREAM ppk7 INTERGENIC	TF binding site mE1_TFBS_cnc
X	9425787	X_9425787_SNP [dm3] X_9531754_SNP [dm6]	T	C	1.670e^-4	0.929	INTRON CG32700
2L	19086363	2L_19086363_SNP [dm3] 2L_19086363_SNP [dm6]	C	T	1.670e^-4	0.929	INTRON Lim3
3L	10576612	3L_10576612_SNP [dm3] 3L_10583512_SNP [dm6]	C	G	1.675e^-4	0.929	INTRON A2bp1
2L	8355996	2L_8355996_SNP [dm3] 2L_8355996_SNP [dm6]	T	A	1.691e^-4	0.929	DOWNSTREAM Mur29B INTRON CG7627	TF binding site mE1_TFBS_cad
3R	18496448	3R_18496448_SNP [dm3] 3R_22670726_SNP [dm6]	T	G	1.693e^-4	0.929	INTRON CG45058
3L	2614606	3L_2614606_SNP [dm3] 3L_2614606_SNP [dm6]	T	G	1.701e^-4	0.929	INTRON Pxn
2R	16984930	2R_16984930_SNP [dm3] 2R_21097425_SNP [dm6]	T	A	1.703e^-4	0.929	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4508910	3L_4508910_SNP [dm3] 3L_4508910_SNP [dm6]	T	C	1.714e^-4	0.929	UPSTREAM NT1 INTERGENIC
3R	15465476	3R_15465476_SNP [dm3] 3R_19639754_SNP [dm6]	A	G	1.730e^-4	0.929	INTRON subdued
3L	14975681	3L_14975681_SNP [dm3] 3L_14982581_SNP [dm6]	A	G	1.736e^-4	0.929	UPSTREAM CG5114 DOWNSTREAM CG3349 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	7069128	2L_7069128_SNP [dm3] 2L_7069128_SNP [dm6]	C	A	1.748e^-4	0.929	SYNONYMOUS_CODING CG11289 DOWNSTREAM Pvf2	TF binding site mE1_TFBS_sens
2L	7069171	2L_7069171_SNP [dm3] 2L_7069171_SNP [dm6]	C	T	1.748e^-4	0.929	SYNONYMOUS_CODING CG11289 DOWNSTREAM Pvf2	TF binding site mE1_TFBS_sens
3R	23497266	3R_23497266_SNP [dm3] 3R_27671544_SNP [dm6]	T	A	1.752e^-4	0.929	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad
3L	13161907	3L_13161907_SNP [dm3] 3L_13168807_SNP [dm6]	A	G	1.779e^-4	0.929	INTERGENIC
3R	8241764	3R_8241764_SNP [dm3] 3R_12416042_SNP [dm6]	T	C	1.781e^-4	0.929	SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_sens
3L	3390456	3L_3390456_SNP [dm3] 3L_3390456_SNP [dm6]	C	G	1.794e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3390458	3L_3390458_SNP [dm3] 3L_3390458_SNP [dm6]	A	T	1.794e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	22006212	X_22006212_SNP [dm3] X_22604376_SNP [dm6]	G	T	1.801e^-4	0.929	INTRON Cda4
3L	1071935	3L_1071935_DEL [dm3] 3L_1071935_DEL [dm6]	TCCCCTCCCACA...	T	1.804e^-4	0.929	INTRON bab1
X	647889	X_647889_SNP [dm3] X_753856_SNP [dm6]	C	A	1.811e^-4	0.929	UPSTREAM CG13361 INTRON CG5254
3L	14205950	3L_14205950_SNP [dm3] 3L_14212850_SNP [dm6]	G	A	1.814e^-4	0.929	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
2L	15280376	2L_15280376_INS [dm3] 2L_15280376_INS [dm6]	A	AT	1.814e^-4	0.929	DOWNSTREAM CR43682 EXON CR45349
2L	7377094	2L_7377094_SNP [dm3] 2L_7377094_SNP [dm6]	T	C	1.822e^-4	0.929	SYNONYMOUS_CODING Wnt10 UPSTREAM ninaC
3L	17797843	3L_17797843_SNP [dm3] 3L_17804743_SNP [dm6]	G	T	1.838e^-4	0.929	UPSTREAM CG5589 DOWNSTREAM CG32187 INTERGENIC	TF binding site mE1_TFBS_eve
3R	10687035	3R_10687035_SNP [dm3] 3R_14861313_SNP [dm6]	T	A	1.840e^-4	0.929	INTRON btsz
2L	7241517	2L_7241517_SNP [dm3] 2L_7241517_SNP [dm6]	C	T	1.860e^-4	0.929	INTRON Ndae1
2R	5967377	2R_5967377_SNP [dm3] 2R_10079872_SNP [dm6]	G	T	1.869e^-4	0.929	DOWNSTREAM scaRNA:MeU1b-A234 INTRON egr
2L	6701212	2L_6701212_SNP [dm3] 2L_6701212_SNP [dm6]	C	T	1.871e^-4	0.929	INTRON Tsp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7840701	3L_7840701_SNP [dm3] 3L_7847601_SNP [dm6]	A	T	1.871e^-4	0.929	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
3L	13744518	3L_13744518_SNP [dm3] 3L_13751418_SNP [dm6]	C	T	1.882e^-4	0.929	INTRON bru-3	TF binding site mE1_TFBS_HSA
3L	13161962	3L_13161962_SNP [dm3] 3L_13168862_SNP [dm6]	T	C	1.894e^-4	0.929	INTERGENIC
2L	18755895	2L_18755895_SNP [dm3] 2L_18755895_SNP [dm6]	G	A	1.898e^-4	0.929	INTERGENIC
3L	6627808	3L_6627808_INS [dm3] 3L_6634708_INS [dm6]	C	CT	1.908e^-4	0.929	INTRON GluRIA
3L	6681740	3L_6681740_SNP [dm3] 3L_6688640_SNP [dm6]	G	A	1.940e^-4	0.929	DOWNSTREAM SP1173 INTERGENIC
2L	12035043	2L_12035043_SNP [dm3] 2L_12035043_SNP [dm6]	G	A	1.953e^-4	0.929	SYNONYMOUS_CODING CG18788 DOWNSTREAM dmGlut & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12035062	2L_12035062_SNP [dm3] 2L_12035062_SNP [dm6]	A	G	1.953e^-4	0.929	NON_SYNONYMOUS_CODING CG18788 DOWNSTREAM dmGlut & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16730592	2R_16730592_DEL [dm3] 2R_20843087_DEL [dm6]	TT	T	1.967e^-4	0.929	INTERGENIC
3L	3446208	3L_3446208_SNP [dm3] 3L_3446208_SNP [dm6]	A	C	1.975e^-4	0.929	INTRON eIF5B
3L	14205944	3L_14205944_SNP [dm3] 3L_14212844_SNP [dm6]	G	A	1.981e^-4	0.929	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
X	13881108	X_13881108_SNP [dm3] X_13987075_SNP [dm6]	T	G	1.995e^-4	0.929	UPSTREAM mamo INTRON mamo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	8710975	2L_8710975_SNP [dm3] 2L_8710975_SNP [dm6]	G	A	1.998e^-4	0.929	SYNONYMOUS_CODING raw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12569991	3L_12569991_SNP [dm3] 3L_12576891_SNP [dm6]	G	T	2.003e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6894168	3L_6894168_SNP [dm3] 3L_6901068_SNP [dm6]	C	T	2.015e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	8206272	2L_8206272_SNP [dm3] 2L_8206272_SNP [dm6]	G	T	2.024e^-4	0.929	START_GAINED CG8419 UTR_5_PRIME CG8419 UPSTREAM CR44120 & 1 other DOWNSTREAM CR44119	TF binding site mE1_TFBS_chinmo
X	651627	X_651627_SNP [dm3] X_757594_SNP [dm6]	C	T	2.027e^-4	0.929	INTRON CG5254
X	651633	X_651633_SNP [dm3] X_757600_SNP [dm6]	T	C	2.027e^-4	0.929	INTRON CG5254
X	651634	X_651634_DEL [dm3] X_757601_DEL [dm6]	ACATA	A	2.027e^-4	0.929	INTRON CG5254
3L	4510378	3L_4510378_SNP [dm3] 3L_4510378_SNP [dm6]	T	A	2.031e^-4	0.929	DOWNSTREAM Tie INTERGENIC
3L	14107039	3L_14107039_SNP [dm3] 3L_14113939_SNP [dm6]	G	A	2.032e^-4	0.929	INTRON Sox21b
2L	3220442	2L_3220442_SNP [dm3] 2L_3220442_SNP [dm6]	T	C	2.045e^-4	0.929	INTERGENIC
3R	15339799	3R_15339799_SNP [dm3] 3R_19514077_SNP [dm6]	G	C	2.062e^-4	0.929	INTRON Dys
3R	8481797	3R_8481797_SNP [dm3] 3R_12656075_SNP [dm6]	T	C	2.072e^-4	0.929	INTRON CG6225
2L	5884972	2L_5884972_SNP [dm3] 2L_5884972_SNP [dm6]	T	C	2.073e^-4	0.929	UTR_5_PRIME CG43185 UPSTREAM Sfp26Ac DOWNSTREAM CG44574
2L	3917534	2L_3917534_SNP [dm3] 2L_3917534_SNP [dm6]	T	A	2.075e^-4	0.929	INTRON fred	TF binding site mE1_TFBS_cad
2L	3917554	2L_3917554_SNP [dm3] 2L_3917554_SNP [dm6]	T	A	2.075e^-4	0.929	INTRON fred	TF binding site mE1_TFBS_cad
3R	14981564	3R_14981564_SNP [dm3] 3R_19155842_SNP [dm6]	G	A	2.082e^-4	0.929	INTRON CG11779	TF binding site mE1_TFBS_sens
3L	6442032	3L_6442032_SNP [dm3] 3L_6448932_SNP [dm6]	T	A	2.085e^-4	0.929	INTRON CG42747
3L	13300474	3L_13300474_SNP [dm3] 3L_13307374_SNP [dm6]	A	T	2.104e^-4	0.929	INTERGENIC
2R	11454841	2R_11454841_SNP [dm3] 2R_15567336_SNP [dm6]	G	A	2.109e^-4	0.929	SYNONYMOUS_CODING Flo1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8027028	3R_8027028_SNP [dm3] 3R_12201306_SNP [dm6]	G	T	2.111e^-4	0.929	INTERGENIC
2L	912408	2L_912408_SNP [dm3] 2L_912408_SNP [dm6]	G	A	2.120e^-4	0.929	DOWNSTREAM CR44061 INTERGENIC
2L	17617464	2L_17617464_SNP [dm3] 2L_17617464_SNP [dm6]	A	C	2.124e^-4	0.929	INTERGENIC
3L	22581848	3L_22581848_SNP [dm3] 3L_22588748_SNP [dm6]	A	G	2.127e^-4	0.929	INTRON CG14459	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6791250	2L_6791250_SNP [dm3] 2L_6791250_SNP [dm6]	T	C	2.128e^-4	0.929	SYNONYMOUS_CODING nrv2	TF binding site BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3R	10601339	3R_10601339_SNP [dm3] 3R_14775617_SNP [dm6]	C	T	2.155e^-4	0.929	INTRON jvl
3L	6894169	3L_6894169_SNP [dm3] 3L_6901069_SNP [dm6]	G	T	2.182e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_Kr
X	2918362	X_2918362_SNP [dm3] X_3024329_SNP [dm6]	C	A	2.184e^-4	0.929	INTRON kirre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10796118	2R_10796118_DEL [dm3] 2R_14908613_DEL [dm6]	GTG	G	2.186e^-4	0.929	UPSTREAM CG10249 INTRON CG10249	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	9916732	3L_9916732_SNP [dm3] 3L_9923632_SNP [dm6]	G	T	2.190e^-4	0.929	INTRON CG34356
3R	19839083	3R_19839083_SNP [dm3] 3R_24013361_SNP [dm6]	T	C	2.207e^-4	0.929	SYNONYMOUS_CODING KrT95D
2L	11793921	2L_11793921_SNP [dm3] 2L_11793921_SNP [dm6]	C	T	2.214e^-4	0.929	SYNONYMOUS_CODING CG14937 DOWNSTREAM crol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	7628580	X_7628580_SNP [dm3] X_7734547_SNP [dm6]	T	A	2.230e^-4	0.929	UTR_5_PRIME Pdp UPSTREAM Rab39 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	7628624	X_7628624_SNP [dm3] X_7734591_SNP [dm6]	C	T	2.230e^-4	0.929	UTR_5_PRIME Pdp UPSTREAM Rab39 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9430397	2R_9430397_SNP [dm3] 2R_13542892_SNP [dm6]	A	T	2.239e^-4	0.929	INTRON CG6145
3L	1470118	3L_1470118_SNP [dm3] 3L_1470118_SNP [dm6]	T	C	2.241e^-4	0.929	DOWNSTREAM CG32319 INTRON Ptp61F
X	16062937	X_16062937_SNP [dm3] X_16168904_SNP [dm6]	G	A	2.250e^-4	0.929	INTERGENIC
3L	8959616	3L_8959616_SNP [dm3] 3L_8966516_SNP [dm6]	C	G	2.259e^-4	0.929	UPSTREAM CG5021 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8959625	3L_8959625_SNP [dm3] 3L_8966525_SNP [dm6]	C	A	2.259e^-4	0.929	UPSTREAM CG5021 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8959673	3L_8959673_SNP [dm3] 3L_8966573_SNP [dm6]	A	G	2.259e^-4	0.929	UPSTREAM CG5021 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8959712	3L_8959712_SNP [dm3] 3L_8966612_SNP [dm6]	A	C	2.259e^-4	0.929	UPSTREAM CG5021 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8959782	3L_8959782_SNP [dm3] 3L_8966682_SNP [dm6]	C	A	2.259e^-4	0.929	UPSTREAM CG5021 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19428371	3L_19428371_SNP [dm3] 3L_19435271_SNP [dm6]	G	T	2.269e^-4	0.929	INTERGENIC
3L	19428372	3L_19428372_SNP [dm3] 3L_19435272_SNP [dm6]	G	T	2.269e^-4	0.929	INTERGENIC
2L	92488	2L_92488_SNP [dm3] 2L_92488_SNP [dm6]	C	T	2.272e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7611935	3L_7611935_SNP [dm3] 3L_7618835_SNP [dm6]	T	A	2.277e^-4	0.929	INTRON CG33275
X	3869134	X_3869134_SNP [dm3] X_3975101_SNP [dm6]	T	C	2.287e^-4	0.929	INTERGENIC
2R	18036975	2R_18036975_SNP [dm3] 2R_22149470_SNP [dm6]	A	T	2.312e^-4	0.929	INTRON a
2R	6919895	2R_6919895_DEL [dm3] 2R_11032390_DEL [dm6]	CGCTTTGGTTC...	C	2.320e^-4	0.929	INTRON luna
X	16019728	X_16019728_SNP [dm3] X_16125695_SNP [dm6]	T	C	2.337e^-4	0.929	INTRON disco-r
3R	17640646	3R_17640646_SNP [dm3] 3R_21814924_SNP [dm6]	C	G	2.363e^-4	0.929	INTRON CASK
3R	14981530	3R_14981530_SNP [dm3] 3R_19155808_SNP [dm6]	A	T	2.375e^-4	0.929	INTRON CG11779	TF binding site mE1_TFBS_sens
X	1600299	X_1600299_SNP [dm3] X_1706266_SNP [dm6]	T	C	2.394e^-4	0.929	INTERGENIC
3L	3446174	3L_3446174_DEL [dm3] 3L_3446174_DEL [dm6]	ATCA	A	2.396e^-4	0.929	INTRON eIF5B
3L	3446199	3L_3446199_SNP [dm3] 3L_3446199_SNP [dm6]	T	A	2.396e^-4	0.929	INTRON eIF5B
3L	3446252	3L_3446252_SNP [dm3] 3L_3446252_SNP [dm6]	T	G	2.396e^-4	0.929	INTRON eIF5B
3L	3446255	3L_3446255_SNP [dm3] 3L_3446255_SNP [dm6]	C	T	2.396e^-4	0.929	INTRON eIF5B
3L	3446274	3L_3446274_SNP [dm3] 3L_3446274_SNP [dm6]	A	G	2.396e^-4	0.929	INTRON eIF5B
2R	17143981	2R_17143981_SNP [dm3] 2R_21256476_SNP [dm6]	G	T	2.425e^-4	0.929	INTRON Rgk3
2L	16047434	2L_16047434_SNP [dm3] 2L_16047434_SNP [dm6]	A	G	2.439e^-4	0.929	SYNONYMOUS_CODING BicC UTR_3_PRIME CG45084	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8959933	3L_8959933_SNP [dm3] 3L_8966833_SNP [dm6]	A	T	2.454e^-4	0.929	UTR_5_PRIME CG5021 UPSTREAM CG5653	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	20697362	3L_20697362_SNP [dm3] 3L_20704262_SNP [dm6]	A	G	2.456e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	20697424	3L_20697424_SNP [dm3] 3L_20704324_SNP [dm6]	G	A	2.456e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_inv
2R	17907264	2R_17907264_SNP [dm3] 2R_22019759_SNP [dm6]	T	C	2.461e^-4	0.929	INTRON CG34370
2R	13870959	2R_13870959_SNP [dm3] 2R_17983454_SNP [dm6]	C	T	2.488e^-4	0.929	INTRON dpr13
3L	7611944	3L_7611944_SNP [dm3] 3L_7618844_SNP [dm6]	C	A	2.505e^-4	0.929	INTRON CG33275
3L	8959626	3L_8959626_SNP [dm3] 3L_8966526_SNP [dm6]	C	A	2.509e^-4	0.929	UPSTREAM CG5021 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4567257	3R_4567257_SNP [dm3] 3R_8741535_SNP [dm6]	T	C	2.517e^-4	0.929	INTRON CG9801
2R	19229197	2R_19229197_SNP [dm3] 2R_23341674_SNP [dm6]	G	A	2.526e^-4	0.929	INTERGENIC
3L	10333874	3L_10333874_SNP [dm3] 3L_10340774_SNP [dm6]	A	C	2.539e^-4	0.929	INTERGENIC
3R	4969824	3R_4969824_SNP [dm3] 3R_9144102_SNP [dm6]	A	G	2.543e^-4	0.929	INTRON pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9443126	2R_9443126_SNP [dm3] 2R_13555621_SNP [dm6]	T	C	2.546e^-4	0.929	UPSTREAM link DOWNSTREAM Roe1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	21999661	2L_21999661_SNP [dm3] 2L_21999661_SNP [dm6]	G	A	2.576e^-4	0.929	DOWNSTREAM CR44916 INTERGENIC
X	651617	X_651617_SNP [dm3] X_757584_SNP [dm6]	T	C	2.605e^-4	0.929	INTRON CG5254
2R	4469399	2R_4469399_SNP [dm3] 2R_8581894_SNP [dm6]	T	C	2.615e^-4	0.929	SYNONYMOUS_CODING CG42326	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12619651	2L_12619651_SNP [dm3] 2L_12619651_SNP [dm6]	A	C	2.616e^-4	0.929	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	20189765	3L_20189765_SNP [dm3] 3L_20196665_SNP [dm6]	C	T	2.627e^-4	0.929	INTRON CG42674
2L	6351407	2L_6351407_SNP [dm3] 2L_6351407_SNP [dm6]	T	C	2.631e^-4	0.929	UPSTREAM CG9498 DOWNSTREAM ppk7 INTERGENIC	TF binding site mE1_TFBS_cnc
2R	18993855	2R_18993855_SNP [dm3] 2R_23106332_SNP [dm6]	A	C	2.631e^-4	0.929	INTERGENIC
2R	14323128	2R_14323128_SNP [dm3] 2R_18435623_SNP [dm6]	G	C	2.633e^-4	0.929	INTRON CG30118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2461050	3L_2461050_SNP [dm3] 3L_2461050_SNP [dm6]	C	T	2.644e^-4	0.929	UTR_5_PRIME CG45186 INTRON CG45186
2R	6307733	2R_6307733_SNP [dm3] 2R_10420228_SNP [dm6]	A	T	2.656e^-4	0.929	DOWNSTREAM CG11825 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8703991	2L_8703991_SNP [dm3] 2L_8703991_SNP [dm6]	T	C	2.661e^-4	0.929	INTRON Hnf4 & 1 other
2L	2956863	2L_2956863_SNP [dm3] 2L_2956863_SNP [dm6]	A	G	2.679e^-4	0.929	UPSTREAM Rbp9 INTRON Rbp9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	6300553	X_6300553_SNP [dm3] X_6406520_SNP [dm6]	A	G	2.680e^-4	0.929	INTERGENIC
3R	5033710	3R_5033710_SNP [dm3] 3R_9207988_SNP [dm6]	G	C	2.682e^-4	0.929	INTRON pum
3R	26041331	3R_26041331_SNP [dm3] 3R_30215609_SNP [dm6]	G	A	2.684e^-4	0.929	UPSTREAM CecC INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	10183875	2L_10183875_SNP [dm3] 2L_10183875_SNP [dm6]	T	G	2.687e^-4	0.929	INTRON Sur
2L	10186758	2L_10186758_SNP [dm3] 2L_10186758_SNP [dm6]	G	T	2.687e^-4	0.929	NON_SYNONYMOUS_CODING Sur
2L	9968855	2L_9968855_SNP [dm3] 2L_9968855_SNP [dm6]	G	T	2.698e^-4	0.929	DOWNSTREAM RpL13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	20203654	3R_20203654_DEL [dm3] 3R_24377932_DEL [dm6]	TT	T	2.698e^-4	0.929	DOWNSTREAM CG33342 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20841758	3R_20841758_SNP [dm3] 3R_25016036_SNP [dm6]	T	C	2.709e^-4	0.929	SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	1600221	X_1600221_SNP [dm3] X_1706188_SNP [dm6]	C	T	2.713e^-4	0.929	INTERGENIC
3L	7416460	3L_7416460_SNP [dm3] 3L_7423360_SNP [dm6]	C	A	2.715e^-4	0.929	UPSTREAM CG42458 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	17797884	3L_17797884_SNP [dm3] 3L_17804784_SNP [dm6]	C	A	2.715e^-4	0.929	UPSTREAM CG5589 DOWNSTREAM CG32187 INTERGENIC
2L	9968726	2L_9968726_SNP [dm3] 2L_9968726_SNP [dm6]	C	T	2.719e^-4	0.929	DOWNSTREAM RpL13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	16720562	2R_16720562_SNP [dm3] 2R_20833057_SNP [dm6]	G	A	2.721e^-4	0.929	UPSTREAM sktl INTRON insc & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2R	10476086	2R_10476086_SNP [dm3] 2R_14588581_SNP [dm6]	G	A	2.724e^-4	0.929	DOWNSTREAM ttv INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	2030534	3L_2030534_SNP [dm3] 3L_2030534_SNP [dm6]	G	T	2.726e^-4	0.929	INTERGENIC
2L	879398	2L_879398_SNP [dm3] 2L_879398_SNP [dm6]	T	G	2.732e^-4	0.929	SYNONYMOUS_CODING CG15824	TF binding site mE1_TFBS_cad
3R	14707357	3R_14707357_SNP [dm3] 3R_18881635_SNP [dm6]	T	G	2.792e^-4	0.929	INTERGENIC
X	18475920	X_18475920_SNP [dm3] X_18581887_SNP [dm6]	C	G	2.797e^-4	0.929	INTERGENIC
2R	7617026	2R_7617026_DEL [dm3] 2R_11729521_DEL [dm6]	AA	A	2.807e^-4	0.929	INTERGENIC
3R	18426467	3R_18426467_SNP [dm3] 3R_22600745_SNP [dm6]	A	G	2.815e^-4	0.929	SYNONYMOUS_CODING Efa6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1038122	3L_1038122_SNP [dm3] 3L_1038122_SNP [dm6]	A	T	2.817e^-4	0.929	UTR_3_PRIME bab1	TF binding site mE1_TFBS_cad
3L	14652399	3L_14652399_SNP [dm3] 3L_14659299_SNP [dm6]	A	G	2.818e^-4	0.929	INTRON dlp	TF binding site BDTNP1_TFBS_twi
2R	5965868	2R_5965868_SNP [dm3] 2R_10078363_SNP [dm6]	T	A	2.828e^-4	0.929	UPSTREAM egr INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	15396937	2L_15396937_SNP [dm3] 2L_15396937_SNP [dm6]	A	G	2.848e^-4	0.929	DOWNSTREAM CR44859 INTERGENIC
3R	11120144	3R_11120144_SNP [dm3] 3R_15294422_SNP [dm6]	T	C	2.860e^-4	0.929	INTRON Tm1	TF binding site mE1_TFBS_HSA
3R	19755216	3R_19755216_SNP [dm3] 3R_23929494_SNP [dm6]	A	G	2.864e^-4	0.929	UPSTREAM CG43999 & 1 other DOWNSTREAM Rpt2 INTRON CG31142	TF binding site mE1_TFBS_cad mE1_TFBS_ttk
3R	15465452	3R_15465452_SNP [dm3] 3R_19639730_SNP [dm6]	G	A	2.915e^-4	0.929	INTRON subdued
3L	8313300	3L_8313300_SNP [dm3] 3L_8320200_SNP [dm6]	T	C	2.920e^-4	0.929	UPSTREAM CG13670 INTERGENIC
3R	7797339	3R_7797339_SNP [dm3] 3R_11971617_SNP [dm6]	T	C	2.934e^-4	0.929	UTR_3_PRIME GC1 UPSTREAM GC2 DOWNSTREAM GC1
3R	17865035	3R_17865035_SNP [dm3] 3R_22039313_SNP [dm6]	T	C	2.951e^-4	0.929	DOWNSTREAM pit INTERGENIC
2L	16812282	2L_16812282_DEL [dm3] 2L_16812282_DEL [dm6]	AA	A	2.978e^-4	0.929	INTRON CG13280 & 1 other
2L	16483589	2L_16483589_DEL [dm3] 2L_16483589_DEL [dm6]	ATTTAATCGTATTCAAAAGC...	A	2.984e^-4	0.929	INTRON dac	regulatory region REDfly_CRMs TF binding site mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_jumu
X	6431261	X_6431261_SNP [dm3] X_6537228_SNP [dm6]	T	A	2.993e^-4	0.929	SYNONYMOUS_CODING dx
2L	6616973	2L_6616973_SNP [dm3] 2L_6616973_SNP [dm6]	T	G	3.014e^-4	0.929	UTR_3_PRIME CG11050 DOWNSTREAM CG11320
3L	19021132	3L_19021132_DEL [dm3] 3L_19028032_DEL [dm6]	CATTAC	C	3.025e^-4	0.929	INTRON nkd
2R	5302218	2R_5302218_SNP [dm3] 2R_9414713_SNP [dm6]	A	G	3.031e^-4	0.929	UTR_5_PRIME wun2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6894279	2R_6894279_SNP [dm3] 2R_11006774_SNP [dm6]	C	T	3.042e^-4	0.929	INTRON luna
3L	3895541	3L_3895541_SNP [dm3] 3L_3895541_SNP [dm6]	A	G	3.046e^-4	0.929	SYNONYMOUS_CODING Gr63a DOWNSTREAM Fie	TF binding site mE1_TFBS_sens
X	7628620	X_7628620_DEL [dm3] X_7734587_DEL [dm6]	TT	T	3.054e^-4	0.929	UTR_5_PRIME Pdp UPSTREAM Rab39 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	6431098	X_6431098_SNP [dm3] X_6537065_SNP [dm6]	A	G	3.058e^-4	0.929	INTRON dx	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	2858642	3L_2858642_SNP [dm3] 3L_2858642_SNP [dm6]	A	G	3.070e^-4	0.929	INTRON CG43444
3R	27177581	3R_27177581_SNP [dm3] 3R_31351859_SNP [dm6]	A	T	3.082e^-4	0.929	INTRON CG34347	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9628429	3L_9628429_SNP [dm3] 3L_9635329_SNP [dm6]	G	A	3.089e^-4	0.929	INTRON fry
3L	9628583	3L_9628583_SNP [dm3] 3L_9635483_SNP [dm6]	A	G	3.089e^-4	0.929	INTRON fry
3R	4959434	3R_4959434_INS [dm3] 3R_9133712_INS [dm6]	T	TT	3.116e^-4	0.929	INTRON pum
X	7920817	X_7920817_SNP [dm3] X_8026784_SNP [dm6]	A	G	3.117e^-4	0.929	UTR_3_PRIME Tbh
3R	27190579	3R_27190579_SNP [dm3] 3R_31364857_SNP [dm6]	T	G	3.128e^-4	0.929	INTRON CG34347
2L	16176272	2L_16176272_SNP [dm3] 2L_16176272_SNP [dm6]	C	G	3.133e^-4	0.929	INTRON Ca-alpha1D	TF binding site mE1_TFBS_HSA
2R	10032819	2R_10032819_SNP [dm3] 2R_14145314_SNP [dm6]	A	G	3.137e^-4	0.929	DOWNSTREAM mir-989 INTERGENIC
2L	7219151	2L_7219151_SNP [dm3] 2L_7219151_SNP [dm6]	A	T	3.141e^-4	0.929	UTR_5_PRIME CG13784 INTRON CG13784	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7744081	3L_7744081_SNP [dm3] 3L_7750981_SNP [dm6]	A	T	3.142e^-4	0.929	DOWNSTREAM CG13685 INTRON CG32373
2L	1089088	2L_1089088_INS [dm3] 2L_1089088_INS [dm6]	G	GCG	3.143e^-4	0.929	INTRON CG4629
2L	14171824	2L_14171824_SNP [dm3] 2L_14171824_SNP [dm6]	A	G	3.145e^-4	0.929	INTRON CG43333
2L	14171838	2L_14171838_SNP [dm3] 2L_14171838_SNP [dm6]	C	T	3.145e^-4	0.929	INTRON CG43333
2L	9874175	2L_9874175_SNP [dm3] 2L_9874175_SNP [dm6]	G	T	3.162e^-4	0.929	INTRON nAChRalpha6
2L	9874176	2L_9874176_SNP [dm3] 2L_9874176_SNP [dm6]	G	T	3.162e^-4	0.929	INTRON nAChRalpha6
2L	9874384	2L_9874384_SNP [dm3] 2L_9874384_SNP [dm6]	G	T	3.162e^-4	0.929	INTRON nAChRalpha6
2R	17868698	2R_17868698_SNP [dm3] 2R_21981193_SNP [dm6]	T	C	3.170e^-4	0.929	DOWNSTREAM Gr58a INTERGENIC
3R	6041177	3R_6041177_SNP [dm3] 3R_10215455_SNP [dm6]	C	A	3.210e^-4	0.929	INTRON Syn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15351912	3R_15351912_SNP [dm3] 3R_19526190_SNP [dm6]	G	A	3.230e^-4	0.929	SYNONYMOUS_CODING Dys INTRON Dys
3R	24052661	3R_24052661_SNP [dm3] 3R_28226939_SNP [dm6]	A	T	3.251e^-4	0.929	INTRON CG34354
2L	15396941	2L_15396941_SNP [dm3] 2L_15396941_SNP [dm6]	T	A	3.254e^-4	0.929	DOWNSTREAM CR44859 INTERGENIC
2L	15397113	2L_15397113_SNP [dm3] 2L_15397113_SNP [dm6]	C	T	3.254e^-4	0.929	DOWNSTREAM CR44859 INTERGENIC
3L	9628433	3L_9628433_DEL [dm3] 3L_9635333_DEL [dm6]	TCAGTATT	T	3.266e^-4	0.929	INTRON fry
2L	15182170	2L_15182170_INS [dm3] 2L_15182170_INS [dm6]	T	TCTT	3.297e^-4	0.929	INTRON CG4168
3R	7876383	3R_7876383_SNP [dm3] 3R_12050661_SNP [dm6]	A	T	3.324e^-4	0.929	INTERGENIC
3L	3890995	3L_3890995_SNP [dm3] 3L_3890995_SNP [dm6]	A	T	3.324e^-4	0.929	DOWNSTREAM CR45422 INTERGENIC
3L	3891112	3L_3891112_INS [dm3] 3L_3891112_INS [dm6]	A	AGAA	3.324e^-4	0.929	DOWNSTREAM CR45422 INTERGENIC
3R	9309812	3R_9309812_SNP [dm3] 3R_13484090_SNP [dm6]	C	A	3.325e^-4	0.929	INTERGENIC
2L	3454740	2L_3454740_SNP [dm3] 2L_3454740_SNP [dm6]	C	T	3.332e^-4	0.929	SYNONYMOUS_CODING Cog3 DOWNSTREAM CG12795
2L	3424452	2L_3424452_SNP [dm3] 2L_3424452_SNP [dm6]	T	C	3.344e^-4	0.929	INTRON pgant2
3L	1744076	3L_1744076_SNP [dm3] 3L_1744076_SNP [dm6]	A	G	3.347e^-4	0.929	SYNONYMOUS_CODING Gk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4509082	3L_4509082_SNP [dm3] 3L_4509082_SNP [dm6]	C	A	3.357e^-4	0.929	UPSTREAM NT1 INTERGENIC
3R	10901909	3R_10901909_INS [dm3] 3R_15076187_INS [dm6]	G	GAAT	3.365e^-4	0.929	UTR_5_PRIME dpr9
2R	8554030	2R_8554030_SNP [dm3] 2R_12666525_SNP [dm6]	G	A	3.384e^-4	0.929	UPSTREAM nemy INTRON nemy	TF binding site mE1_TFBS_bab1
2L	8650816	2L_8650816_SNP [dm3] 2L_8650816_SNP [dm6]	A	T	3.397e^-4	0.929	INTRON Sema-1a
3R	24296265	3R_24296265_SNP [dm3] 3R_28470543_SNP [dm6]	G	T	3.398e^-4	0.929	INTRON beat-VI	TF binding site mE1_TFBS_inv
3R	18133553	3R_18133553_SNP [dm3] 3R_22307831_SNP [dm6]	C	T	3.401e^-4	0.929	DOWNSTREAM CG34377 INTERGENIC
3R	19839359	3R_19839359_DEL [dm3] 3R_24013637_DEL [dm6]	AA	A	3.418e^-4	0.929	INTRON KrT95D
2L	18221371	2L_18221371_SNP [dm3] 2L_18221371_SNP [dm6]	A	C	3.423e^-4	0.929	INTRON CG42750
2R	10480655	2R_10480655_SNP [dm3] 2R_14593150_SNP [dm6]	G	A	3.436e^-4	0.929	INTRON CG12869	TF binding site mE1_TFBS_cad
2R	10480704	2R_10480704_SNP [dm3] 2R_14593199_SNP [dm6]	T	A	3.436e^-4	0.929	INTRON CG12869	TF binding site mE1_TFBS_cad
3L	9617491	3L_9617491_SNP [dm3] 3L_9624391_SNP [dm6]	T	A	3.437e^-4	0.929	DOWNSTREAM LanB2 INTRON CG3335
3R	21834729	3R_21834729_SNP [dm3] 3R_26009007_SNP [dm6]	T	G	3.442e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	3996610	X_3996610_SNP [dm3] X_4102577_SNP [dm6]	A	G	3.454e^-4	0.929	UTR_3_PRIME CG15375 DOWNSTREAM Xpac	TF binding site mE1_TFBS_HSA
2R	16723330	2R_16723330_SNP [dm3] 2R_20835825_SNP [dm6]	A	G	3.458e^-4	0.929	UTR_5_PRIME insc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	9873380	2R_9873380_SNP [dm3] 2R_13985875_SNP [dm6]	G	A	3.459e^-4	0.929	DOWNSTREAM CG8067 & 1 other INTRON RN-tre
2R	9873405	2R_9873405_SNP [dm3] 2R_13985900_SNP [dm6]	C	G	3.459e^-4	0.929	DOWNSTREAM RN-tre INTRON RN-tre
3L	14319220	3L_14319220_SNP [dm3] 3L_14326120_SNP [dm6]	A	C	3.464e^-4	0.929	INTRON fz EXON CR45025
3R	11861202	3R_11861202_SNP [dm3] 3R_16035480_SNP [dm6]	A	G	3.508e^-4	0.929	INTRON pnr	TF binding site BDTNP1_TFBS_dl
2L	22001695	2L_22001695_DEL [dm3] 2L_22001695_DEL [dm6]	AAAATGACAACAATGAGCGT...	A	3.537e^-4	0.929	INTERGENIC
3L	15759197	3L_15759197_SNP [dm3] 3L_15766097_SNP [dm6]	C	T	3.538e^-4	0.929	INTERGENIC
2L	12854135	2L_12854135_SNP [dm3] 2L_12854135_SNP [dm6]	A	G	3.569e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	2533939	3L_2533939_SNP [dm3] 3L_2533939_SNP [dm6]	C	T	3.582e^-4	0.929	INTRON Spn
3L	15450277	3L_15450277_SNP [dm3] 3L_15457177_SNP [dm6]	C	G	3.634e^-4	0.929	UPSTREAM CR45395 & 1 other INTERGENIC
2L	9943065	2L_9943065_SNP [dm3] 2L_9943065_SNP [dm6]	C	T	3.637e^-4	0.929	DOWNSTREAM CG4619 INTRON CG5853
2R	17384838	2R_17384838_SNP [dm3] 2R_21497333_SNP [dm6]	A	T	3.642e^-4	0.929	UPSTREAM Fkbp14 INTRON Fkbp14	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	4273902	2R_4273902_SNP [dm3] 2R_8386397_SNP [dm6]	T	C	3.651e^-4	0.929	UPSTREAM pdm3 INTRON pdm3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15397097	2L_15397097_INS [dm3] 2L_15397097_INS [dm6]	A	AAAAAATT	3.684e^-4	0.929	DOWNSTREAM CR44859 INTERGENIC
X	13056607	X_13056607_SNP [dm3] X_13162574_SNP [dm6]	A	T	3.684e^-4	0.929	SPLICE_SITE_REGION CG34411 UTR_3_PRIME CG12096 DOWNSTREAM CG12096 INTRON CG34411
3L	3300565	3L_3300565_INS [dm3] 3L_3300565_INS [dm6]	C	TCGTTTTACT	3.700e^-4	0.929	INTRON CG14968
X	10121836	X_10121836_SNP [dm3] X_10227803_SNP [dm6]	C	G	3.711e^-4	0.929	SYNONYMOUS_CODING CG34408	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	13857757	3R_13857757_SNP [dm3] 3R_18032035_SNP [dm6]	C	T	3.711e^-4	0.929	INTERGENIC
2L	542418	2L_542418_SNP [dm3] 2L_542418_SNP [dm6]	A	G	3.717e^-4	0.929	DOWNSTREAM Spp INTRON lwr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
3R	6129144	3R_6129144_SNP [dm3] 3R_10303422_SNP [dm6]	G	C	3.734e^-4	0.929	SYNONYMOUS_CODING CG43143 DOWNSTREAM CG43143	TF binding site mE1_TFBS_chinmo
3L	15035266	3L_15035266_SNP [dm3] 3L_15042166_SNP [dm6]	A	G	3.770e^-4	0.929	SYNONYMOUS_CODING Rpn12R DOWNSTREAM ind INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	9550742	3L_9550742_SNP [dm3] 3L_9557642_SNP [dm6]	G	T	3.775e^-4	0.929	INTRON CG42673
3L	9550753	3L_9550753_SNP [dm3] 3L_9557653_SNP [dm6]	A	T	3.775e^-4	0.929	INTRON CG42673
2R	10872630	2R_10872630_SNP [dm3] 2R_14985125_SNP [dm6]	A	T	3.798e^-4	0.929	UPSTREAM tRNA:CR30241 INTRON pcs
3L	12199223	3L_12199223_SNP [dm3] 3L_12206123_SNP [dm6]	T	G	3.804e^-4	0.929	UPSTREAM CG5626 DOWNSTREAM app INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	3446279	3L_3446279_SNP [dm3] 3L_3446279_SNP [dm6]	A	T	3.814e^-4	0.929	INTRON eIF5B
3R	24275909	3R_24275909_SNP [dm3] 3R_28450187_SNP [dm6]	G	A	3.827e^-4	0.929	INTRON beat-VI
2L	15564625	2L_15564625_SNP [dm3] 2L_15564625_SNP [dm6]	G	A	3.830e^-4	0.929	INTRON kek3
3R	1936848	3R_1936848_SNP [dm3] 3R_6111126_SNP [dm6]	G	A	3.853e^-4	0.929	UPSTREAM Obp83ef DOWNSTREAM Obp83g INTERGENIC	regulatory region REDfly_CRMs
3L	3392405	3L_3392405_SNP [dm3] 3L_3392405_SNP [dm6]	T	C	3.853e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18446400	2R_18446400_SNP [dm3] 2R_22558895_SNP [dm6]	G	A	3.854e^-4	0.929	INTRON px
3R	27189481	3R_27189481_SNP [dm3] 3R_31363759_SNP [dm6]	A	C	3.855e^-4	0.929	INTRON CG34347
3R	10682343	3R_10682343_SNP [dm3] 3R_14856621_SNP [dm6]	T	A	3.855e^-4	0.929	INTRON btsz
2R	3003241	2R_3003241_SNP [dm3] 2R_7115736_SNP [dm6]	G	T	3.861e^-4	0.929	INTRON esn
2R	3003579	2R_3003579_SNP [dm3] 2R_7116074_SNP [dm6]	A	G	3.861e^-4	0.929	INTRON esn	TF binding site mE1_TFBS_inv
2R	3003590	2R_3003590_SNP [dm3] 2R_7116085_SNP [dm6]	T	C	3.861e^-4	0.929	INTRON esn	TF binding site mE1_TFBS_inv
3L	3445272	3L_3445272_SNP [dm3] 3L_3445272_SNP [dm6]	A	G	3.883e^-4	0.929	INTRON eIF5B	insulator Insulator_Class_II.mE01
3L	3445300	3L_3445300_SNP [dm3] 3L_3445300_SNP [dm6]	T	A	3.883e^-4	0.929	INTRON eIF5B
3L	3445303	3L_3445303_SNP [dm3] 3L_3445303_SNP [dm6]	C	A	3.883e^-4	0.929	INTRON eIF5B
3L	3445326	3L_3445326_SNP [dm3] 3L_3445326_SNP [dm6]	G	A	3.883e^-4	0.929	INTRON eIF5B
3L	3445353	3L_3445353_SNP [dm3] 3L_3445353_SNP [dm6]	T	C	3.883e^-4	0.929	INTRON eIF5B
2L	7710440	2L_7710440_SNP [dm3] 2L_7710440_SNP [dm6]	T	C	3.887e^-4	0.929	NON_SYNONYMOUS_CODING Tep3 UPSTREAM Ntl EXON CR44990	TF binding site mE1_TFBS_cad
2L	7219185	2L_7219185_SNP [dm3] 2L_7219185_SNP [dm6]	T	A	3.889e^-4	0.929	UTR_5_PRIME CG13784 INTRON CG13784	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6983173	3L_6983173_SNP [dm3] 3L_6990073_SNP [dm6]	T	C	3.889e^-4	0.929	UPSTREAM bin INTERGENIC
3L	6983193	3L_6983193_SNP [dm3] 3L_6990093_SNP [dm6]	G	T	3.889e^-4	0.929	UPSTREAM bin INTERGENIC
2L	4415476	2L_4415476_SNP [dm3] 2L_4415476_SNP [dm6]	T	C	3.893e^-4	0.929	INTRON CG15431
2R	10427069	2R_10427069_SNP [dm3] 2R_14539564_SNP [dm6]	A	C	3.895e^-4	0.929	INTRON ttv
3R	20921511	3R_20921511_SNP [dm3] 3R_25095789_SNP [dm6]	T	C	3.907e^-4	0.929	SYNONYMOUS_CODING fd96Cb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1831935	2R_1831935_SNP [dm3] 2R_5944430_SNP [dm6]	T	G	3.910e^-4	0.929	INTERGENIC
2R	18698786	2R_18698786_SNP [dm3] 2R_22811281_SNP [dm6]	G	A	3.935e^-4	0.929	INTRON stl
2R	6743993	2R_6743993_SNP [dm3] 2R_10856488_SNP [dm6]	C	T	3.950e^-4	0.929	INTRON CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	17797899	3L_17797899_SNP [dm3] 3L_17804799_SNP [dm6]	A	T	3.953e^-4	0.929	UPSTREAM CG5589 DOWNSTREAM CG32187 INTERGENIC
3L	17797913	3L_17797913_SNP [dm3] 3L_17804813_SNP [dm6]	T	A	3.953e^-4	0.929	UPSTREAM CG5589 DOWNSTREAM CG32187 INTERGENIC
3L	4510646	3L_4510646_SNP [dm3] 3L_4510646_SNP [dm6]	A	C	3.958e^-4	0.929	DOWNSTREAM Tie INTERGENIC
3L	3016877	3L_3016877_SNP [dm3] 3L_3016877_SNP [dm6]	C	G	3.961e^-4	0.929	NON_SYNONYMOUS_CODING CG32487 UPSTREAM CG32488
2L	17093090	2L_17093090_SNP [dm3] 2L_17093090_SNP [dm6]	G	A	3.974e^-4	0.929	INTERGENIC
2L	5389251	2L_5389251_SNP [dm3] 2L_5389251_SNP [dm6]	C	T	3.977e^-4	0.929	DOWNSTREAM CR44745 INTERGENIC
2R	17017819	2R_17017819_SNP [dm3] 2R_21130314_SNP [dm6]	T	A	3.978e^-4	0.929	DOWNSTREAM mago INTRON Magi	TF binding site mE1_TFBS_sens
3L	14205942	3L_14205942_SNP [dm3] 3L_14212842_SNP [dm6]	G	T	3.981e^-4	0.929	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
X	19024872	X_19024872_SNP [dm3] X_19130839_SNP [dm6]	C	T	3.991e^-4	0.929	INTERGENIC
3L	4510651	3L_4510651_SNP [dm3] 3L_4510651_SNP [dm6]	A	G	3.995e^-4	0.929	DOWNSTREAM Tie INTERGENIC
3L	8322971	3L_8322971_SNP [dm3] 3L_8329871_SNP [dm6]	C	A	4.010e^-4	0.929	NON_SYNONYMOUS_CODING CG34462
3L	18071395	3L_18071395_SNP [dm3] 3L_18078295_SNP [dm6]	T	C	4.012e^-4	0.929	DOWNSTREAM CR45392 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	5888035	3R_5888035_SNP [dm3] 3R_10062313_SNP [dm6]	G	A	4.017e^-4	0.929	UPSTREAM CG33630 & 1 other EXON CR33629
3L	4509081	3L_4509081_SNP [dm3] 3L_4509081_SNP [dm6]	G	A	4.028e^-4	0.929	UPSTREAM NT1 INTERGENIC
2L	20128377	2L_20128377_SNP [dm3] 2L_20128377_SNP [dm6]	C	T	4.030e^-4	0.929	INTERGENIC
3L	9638479	3L_9638479_SNP [dm3] 3L_9645379_SNP [dm6]	T	C	4.038e^-4	0.929	SYNONYMOUS_CODING CG33696 INTRON fry
3L	9638484	3L_9638484_SNP [dm3] 3L_9645384_SNP [dm6]	A	T	4.038e^-4	0.929	SYNONYMOUS_CODING CG33696 INTRON fry
3L	15035263	3L_15035263_SNP [dm3] 3L_15042163_SNP [dm6]	G	C	4.073e^-4	0.929	SYNONYMOUS_CODING Rpn12R DOWNSTREAM ind INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	19021242	X_19021242_SNP [dm3] X_19127209_SNP [dm6]	G	T	4.086e^-4	0.929	SYNONYMOUS_CODING tgy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19023151	X_19023151_SNP [dm3] X_19129118_SNP [dm6]	C	G	4.086e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	19023183	X_19023183_SNP [dm3] X_19129150_SNP [dm6]	C	T	4.086e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	19024473	X_19024473_SNP [dm3] X_19130440_SNP [dm6]	G	C	4.086e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_HSA
X	2918370	X_2918370_SNP [dm3] X_3024337_SNP [dm6]	A	C	4.095e^-4	0.929	INTRON kirre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	23947014	3R_23947014_SNP [dm3] 3R_28121292_SNP [dm6]	C	A	4.100e^-4	0.929	INTERGENIC
2R	7617080	2R_7617080_SNP [dm3] 2R_11729575_SNP [dm6]	G	C	4.104e^-4	0.929	INTERGENIC
2L	16482191	2L_16482191_SNP [dm3] 2L_16482191_SNP [dm6]	C	G	4.148e^-4	0.929	INTRON dac	regulatory region REDfly_CRMs
2R	10958364	2R_10958364_SNP [dm3] 2R_15070859_SNP [dm6]	T	C	4.180e^-4	0.929	INTERGENIC
X	656288	X_656288_SNP [dm3] X_762255_SNP [dm6]	G	T	4.187e^-4	0.929	DOWNSTREAM RpL22 & 3 others EXON CR44965
X	656289	X_656289_SNP [dm3] X_762256_SNP [dm6]	T	G	4.187e^-4	0.929	DOWNSTREAM RpL22 & 3 others EXON CR44965
3R	10601279	3R_10601279_SNP [dm3] 3R_14775557_SNP [dm6]	T	A	4.188e^-4	0.929	INTRON jvl
3L	8132987	3L_8132987_SNP [dm3] 3L_8139887_SNP [dm6]	T	G	4.190e^-4	0.929	SYNONYMOUS_CODING mus301
3R	20995600	3R_20995600_SNP [dm3] 3R_25169878_SNP [dm6]	A	G	4.191e^-4	0.929	INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl
2L	2979161	2L_2979161_SNP [dm3] 2L_2979161_SNP [dm6]	A	G	4.192e^-4	0.929	SYNONYMOUS_CODING CG9643 DOWNSTREAM CG3165 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22267390	3R_22267390_SNP [dm3] 3R_26441668_SNP [dm6]	A	T	4.198e^-4	0.929	UTR_5_PRIME tx	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	21976776	2L_21976776_INS [dm3] 2L_21976776_INS [dm6]	A	ATTTCAAGACCTCA...	4.214e^-4	0.929	INTERGENIC
2R	6637407	2R_6637407_SNP [dm3] 2R_10749902_SNP [dm6]	A	G	4.219e^-4	0.929	INTRON CG33144
3R	8491251	3R_8491251_SNP [dm3] 3R_12665529_SNP [dm6]	A	T	4.220e^-4	0.929	INTRON CG14395
2L	3753489	2L_3753489_SNP [dm3] 2L_3753489_SNP [dm6]	C	T	4.221e^-4	0.929	UTR_3_PRIME CG10019 DOWNSTREAM CG10019
3L	8160658	3L_8160658_SNP [dm3] 3L_8167558_SNP [dm6]	C	A	4.228e^-4	0.929	INTERGENIC
2L	15397005	2L_15397005_SNP [dm3] 2L_15397005_SNP [dm6]	A	G	4.229e^-4	0.929	DOWNSTREAM CR44859 INTERGENIC
3L	5272604	3L_5272604_SNP [dm3] 3L_5279504_SNP [dm6]	A	G	4.244e^-4	0.929	INTERGENIC
2L	574091	2L_574091_SNP [dm3] 2L_574091_SNP [dm6]	T	C	4.255e^-4	0.929	SYNONYMOUS_CODING Ipk2 UPSTREAM cold	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	6681706	3L_6681706_SNP [dm3] 3L_6688606_SNP [dm6]	C	G	4.262e^-4	0.929	DOWNSTREAM SP1173 INTERGENIC
2L	6301419	2L_6301419_SNP [dm3] 2L_6301419_SNP [dm6]	C	A	4.264e^-4	0.929	SYNONYMOUS_CODING Ddr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18185039	2L_18185039_SNP [dm3] 2L_18185039_SNP [dm6]	T	A	4.268e^-4	0.929	UPSTREAM CG7180 DOWNSTREAM CR44900 INTRON CG42750	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10927336	3R_10927336_SNP [dm3] 3R_15101614_SNP [dm6]	A	G	4.268e^-4	0.929	SYNONYMOUS_CODING CG42788
3R	16812161	3R_16812161_SNP [dm3] 3R_20986439_SNP [dm6]	T	A	4.277e^-4	0.929	DOWNSTREAM CG43446 INTRON Calx
3R	16812179	3R_16812179_SNP [dm3] 3R_20986457_SNP [dm6]	A	T	4.277e^-4	0.929	DOWNSTREAM CG43446 INTRON Calx
3R	19707602	3R_19707602_SNP [dm3] 3R_23881880_SNP [dm6]	G	T	4.287e^-4	0.929	INTRON Pli
2L	16675802	2L_16675802_SNP [dm3] 2L_16675802_SNP [dm6]	T	C	4.288e^-4	0.929	INTRON Trpgamma
3R	10431693	3R_10431693_SNP [dm3] 3R_14605971_SNP [dm6]	G	A	4.307e^-4	0.929	SYNONYMOUS_CODING stumps
3R	15467967	3R_15467967_SNP [dm3] 3R_19642245_SNP [dm6]	G	T	4.314e^-4	0.929	SYNONYMOUS_CODING subdued DOWNSTREAM Vha13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7202410	2L_7202410_SNP [dm3] 2L_7202410_SNP [dm6]	A	G	4.318e^-4	0.929	INTRON CG4502
3R	1936958	3R_1936958_SNP [dm3] 3R_6111236_SNP [dm6]	T	A	4.321e^-4	0.929	UPSTREAM Obp83ef DOWNSTREAM Obp83g INTERGENIC	regulatory region REDfly_CRMs
2R	11819648	2R_11819648_SNP [dm3] 2R_15932143_SNP [dm6]	T	C	4.322e^-4	0.929	UPSTREAM bdg DOWNSTREAM Iap2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3R	21834878	3R_21834878_SNP [dm3] 3R_26009156_SNP [dm6]	C	T	4.332e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
3L	15357208	3L_15357208_SNP [dm3] 3L_15364108_SNP [dm6]	C	T	4.337e^-4	0.929	INTERGENIC
3L	5493709	3L_5493709_SNP [dm3] 3L_5500609_SNP [dm6]	A	G	4.345e^-4	0.929	DOWNSTREAM CR44518 & 1 other INTERGENIC
2L	12854130	2L_12854130_SNP [dm3] 2L_12854130_SNP [dm6]	T	A	4.347e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9827867	2L_9827867_SNP [dm3] 2L_9827867_SNP [dm6]	A	C	4.348e^-4	0.929	INTRON nAChRalpha6
X	687719	X_687719_SNP [dm3] X_793686_SNP [dm6]	A	C	4.352e^-4	0.929	SYNONYMOUS_CODING CG16989	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9737010	3L_9737010_SNP [dm3] 3L_9743910_SNP [dm6]	C	T	4.353e^-4	0.929	UTR_5_PRIME CG42268 INTRON CG42268 & 1 other
3R	27167348	3R_27167348_SNP [dm3] 3R_31341626_SNP [dm6]	C	T	4.363e^-4	0.929	INTRON CG34347
3L	20697420	3L_20697420_SNP [dm3] 3L_20704320_SNP [dm6]	C	A	4.365e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_inv
3L	892903	3L_892903_SNP [dm3] 3L_892903_SNP [dm6]	T	C	4.374e^-4	0.929	UTR_3_PRIME CG32479
2R	9650806	2R_9650806_DEL [dm3] 2R_13763301_DEL [dm6]	ACATACACACACA...	A	4.384e^-4	0.929	INTERGENIC
2R	13697393	2R_13697393_SNP [dm3] 2R_17809888_SNP [dm6]	C	T	4.410e^-4	0.929	INTRON grh	TF binding site BDTNP1_TFBS_da
2L	15396947	2L_15396947_SNP [dm3] 2L_15396947_SNP [dm6]	A	G	4.412e^-4	0.929	DOWNSTREAM CR44859 INTERGENIC
2L	15397065	2L_15397065_SNP [dm3] 2L_15397065_SNP [dm6]	T	C	4.412e^-4	0.929	DOWNSTREAM CR44859 INTERGENIC
2L	15397076	2L_15397076_INS [dm3] 2L_15397076_INS [dm6]	T	TAT	4.412e^-4	0.929	DOWNSTREAM CR44859 INTERGENIC
3L	7098096	3L_7098096_SNP [dm3] 3L_7104996_SNP [dm6]	G	A	4.414e^-4	0.929	INTRON form3
3R	21833505	3R_21833505_SNP [dm3] 3R_26007783_SNP [dm6]	T	C	4.417e^-4	0.929	UPSTREAM CR45039 INTERGENIC
3R	21834781	3R_21834781_SNP [dm3] 3R_26009059_SNP [dm6]	T	G	4.417e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21476000	3R_21476000_SNP [dm3] 3R_25650278_SNP [dm6]	C	A	4.468e^-4	0.929	UTR_3_PRIME jigr1 DOWNSTREAM jigr1	TF binding site mE1_TFBS_cad
3L	10573342	3L_10573342_SNP [dm3] 3L_10580242_SNP [dm6]	G	A	4.480e^-4	0.929	INTRON A2bp1
3L	10577024	3L_10577024_SNP [dm3] 3L_10583924_SNP [dm6]	T	C	4.480e^-4	0.929	INTRON A2bp1
3L	10577506	3L_10577506_SNP [dm3] 3L_10584406_SNP [dm6]	T	A	4.480e^-4	0.929	INTRON A2bp1
3R	26640096	3R_26640096_SNP [dm3] 3R_30814374_SNP [dm6]	C	T	4.485e^-4	0.929	INTRON cindr	TF binding site BDTNP1_TFBS_twi
2L	12797432	2L_12797432_SNP [dm3] 2L_12797432_SNP [dm6]	C	G	4.487e^-4	0.929	INTERGENIC
3R	25855456	3R_25855456_SNP [dm3] 3R_30029734_SNP [dm6]	G	A	4.488e^-4	0.929	INTRON Axn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	19045501	3R_19045501_SNP [dm3] 3R_23219779_SNP [dm6]	C	G	4.494e^-4	0.929	INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15465526	3R_15465526_SNP [dm3] 3R_19639804_SNP [dm6]	T	C	4.497e^-4	0.929	INTRON subdued
2L	11552225	2L_11552225_SNP [dm3] 2L_11552225_SNP [dm6]	T	C	4.506e^-4	0.929	INTERGENIC
3R	9222221	3R_9222221_SNP [dm3] 3R_13396499_SNP [dm6]	C	G	4.507e^-4	0.929	DOWNSTREAM CG14374 INTERGENIC
3R	9222223	3R_9222223_SNP [dm3] 3R_13396501_SNP [dm6]	T	A	4.507e^-4	0.929	DOWNSTREAM CG14374 INTERGENIC
3L	5998985	3L_5998985_SNP [dm3] 3L_6005885_SNP [dm6]	G	T	4.539e^-4	0.929	INTRON PVRAP
2L	879512	2L_879512_SNP [dm3] 2L_879512_SNP [dm6]	C	T	4.573e^-4	0.929	SYNONYMOUS_CODING CG15824	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15484357	3R_15484357_SNP [dm3] 3R_19658635_SNP [dm6]	T	G	4.577e^-4	0.929	UPSTREAM CG6184 INTERGENIC
2L	9438246	2L_9438246_SNP [dm3] 2L_9438246_SNP [dm6]	T	C	4.593e^-4	0.929	INTRON numb	TF binding site BDTNP1_TFBS_dl
3L	2880743	3L_2880743_INS [dm3] 3L_2880743_INS [dm6]	C	CTG	4.610e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	9567864	2R_9567864_SNP [dm3] 2R_13680359_SNP [dm6]	T	G	4.636e^-4	0.929	INTRON fas
X	1600370	X_1600370_SNP [dm3] X_1706337_SNP [dm6]	T	C	4.649e^-4	0.929	INTERGENIC
3R	11868030	3R_11868030_SNP [dm3] 3R_16042308_SNP [dm6]	T	C	4.662e^-4	0.929	DOWNSTREAM pnr INTERGENIC
3L	5571839	3L_5571839_SNP [dm3] 3L_5578739_SNP [dm6]	G	A	4.678e^-4	0.929	INTERGENIC
3R	4447826	3R_4447826_SNP [dm3] 3R_8622104_SNP [dm6]	T	C	4.701e^-4	0.929	INTRON 5-HT2B
3R	19068672	3R_19068672_SNP [dm3] 3R_23242950_SNP [dm6]	T	G	4.729e^-4	0.929	INTRON CG4467
3L	9506776	3L_9506776_SNP [dm3] 3L_9513676_SNP [dm6]	T	G	4.731e^-4	0.929	UPSTREAM CG33702 DOWNSTREAM CG33700 EXON CR33701
2R	9968516	2R_9968516_SNP [dm3] 2R_14081011_SNP [dm6]	C	T	4.740e^-4	0.929	INTRON Prosap
2R	13697397	2R_13697397_SNP [dm3] 2R_17809892_SNP [dm6]	T	A	4.743e^-4	0.929	INTRON grh	TF binding site BDTNP1_TFBS_da
2L	4457196	2L_4457196_SNP [dm3] 2L_4457196_SNP [dm6]	A	G	4.762e^-4	0.929	UTR_3_PRIME RpL27A UPSTREAM Gs1l DOWNSTREAM snoRNA:Me18S-C1831	TF binding site BDTNP1_TFBS_dl
2L	15397030	2L_15397030_SNP [dm3] 2L_15397030_SNP [dm6]	A	G	4.766e^-4	0.929	DOWNSTREAM CR44859 INTERGENIC
2L	7089627	2L_7089627_SNP [dm3] 2L_7089627_SNP [dm6]	C	T	4.767e^-4	0.929	INTERGENIC
2R	12373408	2R_12373408_SNP [dm3] 2R_16485903_SNP [dm6]	C	T	4.782e^-4	0.929	UPSTREAM CG15712 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	20703442	3R_20703442_SNP [dm3] 3R_24877720_SNP [dm6]	C	A	4.788e^-4	0.929	NON_SYNONYMOUS_CODING CG31381 INTRON CG11089	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	20703453	3R_20703453_SNP [dm3] 3R_24877731_SNP [dm6]	A	C	4.788e^-4	0.929	NON_SYNONYMOUS_CODING CG31381 INTRON CG11089	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	15477735	3R_15477735_SNP [dm3] 3R_19652013_SNP [dm6]	C	T	4.813e^-4	0.929	NON_SYNONYMOUS_CODING CG31219 DOWNSTREAM CG6184
3L	17989359	3L_17989359_SNP [dm3] 3L_17996259_SNP [dm6]	C	T	4.826e^-4	0.929	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
X	2427400	X_2427400_SNP [dm3] X_2533367_SNP [dm6]	A	G	4.841e^-4	0.929	INTRON trol	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15089199	2R_15089199_SNP [dm3] 2R_19201694_SNP [dm6]	A	C	4.844e^-4	0.929	INTRON hppy
3L	4999613	3L_4999613_SNP [dm3] 3L_4999613_SNP [dm6]	G	A	4.847e^-4	0.929	INTRON Con	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	4509073	3L_4509073_SNP [dm3] 3L_4509073_SNP [dm6]	A	G	4.884e^-4	0.929	UPSTREAM NT1 INTERGENIC
2L	103281	2L_103281_SNP [dm3] 2L_103281_SNP [dm6]	A	T	4.916e^-4	0.929	NON_SYNONYMOUS_CODING CG11377 DOWNSTREAM Nhe1	TF binding site mE1_TFBS_sens
X	1600204	X_1600204_SNP [dm3] X_1706171_SNP [dm6]	A	T	4.918e^-4	0.929	INTERGENIC
X	1600211	X_1600211_SNP [dm3] X_1706178_SNP [dm6]	T	A	4.918e^-4	0.929	INTERGENIC
X	1600216	X_1600216_SNP [dm3] X_1706183_SNP [dm6]	C	T	4.918e^-4	0.929	INTERGENIC
X	18992835	X_18992835_SNP [dm3] X_19098802_SNP [dm6]	T	C	4.924e^-4	0.929	INTERGENIC
2L	13987001	2L_13987001_SNP [dm3] 2L_13987001_SNP [dm6]	G	T	4.929e^-4	0.929	INTRON rk	insulator Insulator_Class_II.mE01
2L	13987002	2L_13987002_SNP [dm3] 2L_13987002_SNP [dm6]	A	G	4.929e^-4	0.929	INTRON rk	insulator Insulator_Class_II.mE01
3L	8961098	3L_8961098_SNP [dm3] 3L_8967998_SNP [dm6]	T	C	4.937e^-4	0.929	UTR_3_PRIME CG5021 UPSTREAM CG5026	TF binding site mE1_TFBS_HSA
3R	25946643	3R_25946643_SNP [dm3] 3R_30120921_SNP [dm6]	T	C	4.947e^-4	0.929	UTR_3_PRIME sima
2R	9430699	2R_9430699_SNP [dm3] 2R_13543194_SNP [dm6]	G	C	4.953e^-4	0.929	INTRON CG6145
2L	18579300	2L_18579300_SNP [dm3] 2L_18579300_SNP [dm6]	C	T	4.964e^-4	0.929	INTRON Pde11
3L	3891355	3L_3891355_SNP [dm3] 3L_3891355_SNP [dm6]	C	T	4.996e^-4	0.929	DOWNSTREAM CR45422 INTERGENIC
X	4153741	X_4153741_SNP [dm3] X_4259708_SNP [dm6]	C	T	4.998e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	996412	2L_996412_SNP [dm3] 2L_996412_SNP [dm6]	T	C	5.020e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	9628481	3L_9628481_SNP [dm3] 3L_9635381_SNP [dm6]	G	C	5.033e^-4	0.929	INTRON fry
3R	18579842	3R_18579842_SNP [dm3] 3R_22754120_SNP [dm6]	A	G	5.057e^-4	0.929	UPSTREAM CG7029 INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	17427900	2L_17427900_SNP [dm3] 2L_17427900_SNP [dm6]	A	G	5.062e^-4	0.929	UTR_5_PRIME Dif INTRON Dif
X	2848864	X_2848864_SNP [dm3] X_2954831_SNP [dm6]	G	A	5.070e^-4	0.929	SYNONYMOUS_CODING rst INTRON kirre	TF binding site mE1_TFBS_cad
3R	850522	3R_850522_SNP [dm3] 3R_5024800_SNP [dm6]	T	A	5.075e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr
3L	6627697	3L_6627697_SNP [dm3] 3L_6634597_SNP [dm6]	T	C	5.080e^-4	0.929	SYNONYMOUS_CODING GluRIA
3L	15975098	3L_15975098_SNP [dm3] 3L_15981998_SNP [dm6]	G	C	5.088e^-4	0.929	DOWNSTREAM CG17027 INTRON brm	TF binding site BDTNP1_TFBS_dl
3R	5969961	3R_5969961_SNP [dm3] 3R_10144239_SNP [dm6]	G	A	5.094e^-4	0.929	UPSTREAM Invadolysin & 1 other DOWNSTREAM CG42759 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
2L	16875867	2L_16875867_SNP [dm3] 2L_16875867_SNP [dm6]	C	A	5.100e^-4	0.929	INTRON CR31781
3L	6460216	3L_6460216_SNP [dm3] 3L_6467116_SNP [dm6]	C	G	5.109e^-4	0.929	INTRON CG42747	TF binding site mE1_TFBS_cad
3R	6077731	3R_6077731_SNP [dm3] 3R_10252009_SNP [dm6]	A	G	5.115e^-4	0.929	DOWNSTREAM CG42795 INTRON CG3999	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8974227	3L_8974227_SNP [dm3] 3L_8981127_SNP [dm6]	T	A	5.124e^-4	0.929	UPSTREAM CG13314 INTERGENIC
3L	9319161	3L_9319161_SNP [dm3] 3L_9326061_SNP [dm6]	T	G	5.127e^-4	0.929	INTERGENIC
2L	8355998	2L_8355998_SNP [dm3] 2L_8355998_SNP [dm6]	T	A	5.130e^-4	0.929	DOWNSTREAM Mur29B INTRON CG7627	TF binding site mE1_TFBS_cad
2L	8356009	2L_8356009_SNP [dm3] 2L_8356009_SNP [dm6]	C	G	5.130e^-4	0.929	DOWNSTREAM Mur29B INTRON CG7627	TF binding site mE1_TFBS_cad
3L	7306494	3L_7306494_SNP [dm3] 3L_7313394_SNP [dm6]	T	A	5.135e^-4	0.929	UPSTREAM unc-13-4A INTERGENIC
3L	7306508	3L_7306508_SNP [dm3] 3L_7313408_SNP [dm6]	C	A	5.135e^-4	0.929	UPSTREAM unc-13-4A INTERGENIC
3L	2575438	3L_2575438_SNP [dm3] 3L_2575438_SNP [dm6]	T	C	5.145e^-4	0.929	INTRON msn
3L	3898845	3L_3898845_SNP [dm3] 3L_3898845_SNP [dm6]	A	C	5.164e^-4	0.929	DOWNSTREAM Ubi-p63E INTRON Ccz1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	574363	2L_574363_SNP [dm3] 2L_574363_SNP [dm6]	A	G	5.181e^-4	0.929	UPSTREAM cold & 1 other INTRON cold	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA
2L	574411	2L_574411_SNP [dm3] 2L_574411_SNP [dm6]	G	T	5.181e^-4	0.929	UPSTREAM cold & 1 other INTRON cold	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA
3R	13745317	3R_13745317_SNP [dm3] 3R_17919595_SNP [dm6]	C	A	5.185e^-4	0.929	UPSTREAM cpo INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
2R	6556450	2R_6556450_SNP [dm3] 2R_10668945_SNP [dm6]	C	A	5.188e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	5642525	2L_5642525_SNP [dm3] 2L_5642525_SNP [dm6]	A	C	5.189e^-4	0.929	DOWNSTREAM mir-963 & 1 other INTRON CG31646
3R	11641724	3R_11641724_SNP [dm3] 3R_15816002_SNP [dm6]	G	A	5.189e^-4	0.929	INTRON alpha-Man-IIb
X	6618879	X_6618879_SNP [dm3] X_6724846_SNP [dm6]	C	T	5.209e^-4	0.929	INTRON CG3168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz
2L	15760127	2L_15760127_SNP [dm3] 2L_15760127_SNP [dm6]	C	G	5.245e^-4	0.929	INTRON Gli	TF binding site mE1_TFBS_cad
3R	21833645	3R_21833645_SNP [dm3] 3R_26007923_SNP [dm6]	C	A	5.245e^-4	0.929	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21833710	3R_21833710_SNP [dm3] 3R_26007988_SNP [dm6]	G	A	5.245e^-4	0.929	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7076895	2L_7076895_SNP [dm3] 2L_7076895_SNP [dm6]	T	G	5.253e^-4	0.929	INTRON Pvf2
2R	9430092	2R_9430092_SNP [dm3] 2R_13542587_SNP [dm6]	C	T	5.259e^-4	0.929	INTRON CG6145
2R	16226478	2R_16226478_SNP [dm3] 2R_20338973_SNP [dm6]	A	C	5.260e^-4	0.929	INTERGENIC
3L	2463552	3L_2463552_SNP [dm3] 3L_2463552_SNP [dm6]	G	A	5.269e^-4	0.929	NON_SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9179552	2R_9179552_SNP [dm3] 2R_13292047_SNP [dm6]	G	A	5.279e^-4	0.929	INTRON Dh31-R
2L	15397008	2L_15397008_SNP [dm3] 2L_15397008_SNP [dm6]	A	G	5.287e^-4	0.929	DOWNSTREAM CR44859 INTERGENIC
X	12608543	X_12608543_SNP [dm3] X_12714510_SNP [dm6]	T	C	5.289e^-4	0.929	SYNONYMOUS_CODING Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad
X	22138754	X_22138754_SNP [dm3] X_22736918_SNP [dm6]	G	T	5.303e^-4	0.929	INTRON CR44997
2R	4024072	2R_4024072_SNP [dm3] 2R_8136567_SNP [dm6]	G	C	5.315e^-4	0.929	DOWNSTREAM Lpin INTERGENIC
3R	13745658	3R_13745658_SNP [dm3] 3R_17919936_SNP [dm6]	T	C	5.316e^-4	0.929	UTR_5_PRIME cpo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	12034680	2L_12034680_SNP [dm3] 2L_12034680_SNP [dm6]	A	C	5.327e^-4	0.929	NON_SYNONYMOUS_CODING CG18788 DOWNSTREAM dmGlut	TF binding site mE1_TFBS_chinmo
2L	19335173	2L_19335173_SNP [dm3] 2L_19335173_SNP [dm6]	G	T	5.331e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13869991	2R_13869991_SNP [dm3] 2R_17982486_SNP [dm6]	A	G	5.343e^-4	0.929	INTRON dpr13
3L	14978265	3L_14978265_DEL [dm3] 3L_14985165_DEL [dm6]	AA	A	5.357e^-4	0.929	DOWNSTREAM CG5114 INTRON mnd	TF binding site mE1_TFBS_Kr
3R	21833465	3R_21833465_SNP [dm3] 3R_26007743_SNP [dm6]	C	T	5.358e^-4	0.929	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21834820	3R_21834820_SNP [dm3] 3R_26009098_SNP [dm6]	T	C	5.365e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	1567769	X_1567769_SNP [dm3] X_1673736_SNP [dm6]	T	A	5.366e^-4	0.929	UTR_3_PRIME CG32809 DOWNSTREAM hfw
X	1567827	X_1567827_SNP [dm3] X_1673794_SNP [dm6]	G	A	5.366e^-4	0.929	UTR_3_PRIME CG32809 DOWNSTREAM hfw
X	10741957	X_10741957_SNP [dm3] X_10847924_SNP [dm6]	G	A	5.381e^-4	0.929	SYNONYMOUS_CODING CG17333 UPSTREAM sbr & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	8961227	3L_8961227_SNP [dm3] 3L_8968127_SNP [dm6]	G	A	5.382e^-4	0.929	UTR_3_PRIME CG5021 UPSTREAM CG5026 DOWNSTREAM CG5021
3L	8961375	3L_8961375_SNP [dm3] 3L_8968275_SNP [dm6]	C	T	5.382e^-4	0.929	UPSTREAM CG5026 DOWNSTREAM CG5021 INTERGENIC
3R	4465210	3R_4465210_SNP [dm3] 3R_8639488_SNP [dm6]	T	A	5.384e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	16801096	2R_16801096_SNP [dm3] 2R_20913591_SNP [dm6]	C	T	5.387e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	10349250	X_10349250_SNP [dm3] X_10455217_SNP [dm6]	C	T	5.389e^-4	0.929	UPSTREAM CG32683 INTERGENIC
X	6201555	X_6201555_DEL [dm3] X_6307522_DEL [dm6]	ATTGCCGTCCATA...	T	5.395e^-4	0.929	DOWNSTREAM CG3823 INTERGENIC
2R	9515870	2R_9515870_SNP [dm3] 2R_13628365_SNP [dm6]	C	T	5.429e^-4	0.929	INTRON fas
2L	12577146	2L_12577146_SNP [dm3] 2L_12577146_SNP [dm6]	C	T	5.462e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	8928535	3L_8928535_SNP [dm3] 3L_8935435_SNP [dm6]	A	T	5.466e^-4	0.929	SYNONYMOUS_CODING CG43783
2R	15089211	2R_15089211_SNP [dm3] 2R_19201706_SNP [dm6]	T	A	5.488e^-4	0.929	INTRON hppy
2L	879470	2L_879470_SNP [dm3] 2L_879470_SNP [dm6]	A	G	5.514e^-4	0.929	SYNONYMOUS_CODING CG15824	TF binding site mE1_TFBS_cad
2L	574199	2L_574199_SNP [dm3] 2L_574199_SNP [dm6]	T	A	5.518e^-4	0.929	UTR_5_PRIME Ipk2 UPSTREAM cold	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	9438564	2L_9438564_SNP [dm3] 2L_9438564_SNP [dm6]	G	A	5.520e^-4	0.929	INTRON numb	TF binding site BDTNP1_TFBS_dl
2L	15397007	2L_15397007_SNP [dm3] 2L_15397007_SNP [dm6]	T	C	5.521e^-4	0.929	DOWNSTREAM CR44859 INTERGENIC
X	7972058	X_7972058_SNP [dm3] X_8078025_SNP [dm6]	T	C	5.531e^-4	0.929	SYNONYMOUS_CODING CG1571 DOWNSTREAM CG2254
X	4645705	X_4645705_INS [dm3] X_4751672_INS [dm6]	T	TCAGAGCAT	5.541e^-4	0.929	INTERGENIC
X	7786718	X_7786718_SNP [dm3] X_7892685_SNP [dm6]	A	T	5.545e^-4	0.929	DOWNSTREAM CG18624 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
X	3210682	X_3210682_SNP [dm3] X_3316649_SNP [dm6]	T	A	5.553e^-4	0.929	UPSTREAM CG10793 INTRON dnc & 1 other
X	14119848	X_14119848_SNP [dm3] X_14225815_SNP [dm6]	C	T	5.565e^-4	0.929	UTR_5_PRIME CG11674 UPSTREAM mRpL38	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6981207	3L_6981207_SNP [dm3] 3L_6988107_SNP [dm6]	T	C	5.589e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sbb
3L	13648812	3L_13648812_SNP [dm3] 3L_13655712_SNP [dm6]	T	C	5.601e^-4	0.929	INTRON bru-3
3R	11788485	3R_11788485_SNP [dm3] 3R_15962763_SNP [dm6]	C	T	5.604e^-4	0.929	SYNONYMOUS_CODING CG4287 DOWNSTREAM Sap47	TF binding site mE1_TFBS_sens
3R	11788809	3R_11788809_SNP [dm3] 3R_15963087_SNP [dm6]	C	G	5.604e^-4	0.929	SYNONYMOUS_CODING CG4287 UPSTREAM CG5516 DOWNSTREAM Sap47	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	16652379	3R_16652379_SNP [dm3] 3R_20826657_SNP [dm6]	C	G	5.612e^-4	0.929	UPSTREAM CR44047 INTRON AdSS
3L	15997469	3L_15997469_SNP [dm3] 3L_16004369_SNP [dm6]	C	T	5.613e^-4	0.929	UTR_5_PRIME CG5830 UPSTREAM mRpS31	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	15464555	2R_15464555_SNP [dm3] 2R_19577050_SNP [dm6]	C	T	5.616e^-4	0.929	INTRON sm
3L	8723944	3L_8723944_SNP [dm3] 3L_8730844_SNP [dm6]	G	T	5.624e^-4	0.929	DOWNSTREAM Cp19 INTERGENIC
3L	8724007	3L_8724007_SNP [dm3] 3L_8730907_SNP [dm6]	T	A	5.624e^-4	0.929	DOWNSTREAM Cp19 INTERGENIC
3R	14707388	3R_14707388_SNP [dm3] 3R_18881666_SNP [dm6]	T	A	5.638e^-4	0.929	INTERGENIC
3L	7285350	3L_7285350_SNP [dm3] 3L_7292250_SNP [dm6]	T	C	5.644e^-4	0.929	INTRON unc-13-4A
3L	7285381	3L_7285381_SNP [dm3] 3L_7292281_SNP [dm6]	G	A	5.644e^-4	0.929	INTRON unc-13-4A
X	17144780	X_17144780_SNP [dm3] X_17250747_SNP [dm6]	T	C	5.644e^-4	0.929	INTRON f	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15344869	3L_15344869_SNP [dm3] 3L_15351769_SNP [dm6]	A	C	5.644e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17118909	2R_17118909_SNP [dm3] 2R_21231404_SNP [dm6]	T	C	5.645e^-4	0.929	INTRON ASPP
2L	12854242	2L_12854242_SNP [dm3] 2L_12854242_SNP [dm6]	C	A	5.650e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	10009893	2L_10009893_SNP [dm3] 2L_10009893_SNP [dm6]	A	C	5.651e^-4	0.929	UPSTREAM Trp1 INTRON Trp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	13560325	2R_13560325_INS [dm3] 2R_17672820_INS [dm6]	C	CATAACAC	5.666e^-4	0.929	UPSTREAM P32 DOWNSTREAM Sema-1b INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	9563072	3L_9563072_SNP [dm3] 3L_9569972_SNP [dm6]	T	A	5.670e^-4	0.929	INTRON CG42673
2L	17727660	2L_17727660_SNP [dm3] 2L_17727660_SNP [dm6]	T	C	5.703e^-4	0.929	INTRON CadN
2L	5465062	2L_5465062_SNP [dm3] 2L_5465062_SNP [dm6]	A	C	5.728e^-4	0.929	INTRON mid	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	13881123	X_13881123_SNP [dm3] X_13987090_SNP [dm6]	C	T	5.734e^-4	0.929	UPSTREAM mamo INTRON mamo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	14060156	3R_14060156_SNP [dm3] 3R_18234434_SNP [dm6]	A	T	5.739e^-4	0.929	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	14334819	2L_14334819_SNP [dm3] 2L_14334819_SNP [dm6]	C	T	5.747e^-4	0.929	DOWNSTREAM ms_2_34Fe INTRON CG33090
2L	14334821	2L_14334821_SNP [dm3] 2L_14334821_SNP [dm6]	G	A	5.747e^-4	0.929	DOWNSTREAM ms_2_34Fe INTRON CG33090
2R	17078585	2R_17078585_SNP [dm3] 2R_21191080_SNP [dm6]	A	G	5.750e^-4	0.929	NON_SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15397011	2L_15397011_SNP [dm3] 2L_15397011_SNP [dm6]	A	G	5.756e^-4	0.929	DOWNSTREAM CR44859 INTERGENIC
3R	11476285	3R_11476285_SNP [dm3] 3R_15650563_SNP [dm6]	A	G	5.757e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17809574	2R_17809574_SNP [dm3] 2R_21922069_SNP [dm6]	A	T	5.761e^-4	0.929	INTRON Fili
2R	13599613	2R_13599613_SNP [dm3] 2R_17712108_SNP [dm6]	A	G	5.762e^-4	0.929	INTRON CG6424
X	18022995	X_18022995_SNP [dm3] X_18128962_SNP [dm6]	A	T	5.771e^-4	0.929	DOWNSTREAM mir-210 & 1 other INTERGENIC
X	18022996	X_18022996_SNP [dm3] X_18128963_SNP [dm6]	C	T	5.771e^-4	0.929	DOWNSTREAM mir-210 & 1 other INTERGENIC
X	18022999	X_18022999_SNP [dm3] X_18128966_SNP [dm6]	C	T	5.771e^-4	0.929	DOWNSTREAM mir-210 & 1 other INTERGENIC
2R	10427115	2R_10427115_SNP [dm3] 2R_14539610_SNP [dm6]	T	C	5.799e^-4	0.929	INTRON ttv
2R	19230561	2R_19230561_SNP [dm3] 2R_23343038_SNP [dm6]	C	T	5.812e^-4	0.929	DOWNSTREAM CG3502 INTERGENIC	TF binding site mE1_TFBS_cad
3R	27189470	3R_27189470_SNP [dm3] 3R_31363748_SNP [dm6]	A	C	5.832e^-4	0.929	INTRON CG34347
2L	22000005	2L_22000005_SNP [dm3] 2L_22000005_SNP [dm6]	C	G	5.859e^-4	0.929	INTRON CR44916 EXON CR44916
2L	9968772	2L_9968772_SNP [dm3] 2L_9968772_SNP [dm6]	G	A	5.862e^-4	0.929	DOWNSTREAM RpL13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18991429	2R_18991429_SNP [dm3] 2R_23103906_SNP [dm6]	T	G	5.880e^-4	0.929	UPSTREAM Gr59c DOWNSTREAM Gr59d INTERGENIC
2R	12967974	2R_12967974_SNP [dm3] 2R_17080469_SNP [dm6]	C	T	5.880e^-4	0.929	INTRON CG30460
2R	13802127	2R_13802127_SNP [dm3] 2R_17914622_SNP [dm6]	C	T	5.892e^-4	0.929	INTRON Elk
3R	27205228	3R_27205228_SNP [dm3] 3R_31379506_SNP [dm6]	A	T	5.892e^-4	0.929	INTERGENIC
2R	5861927	2R_5861927_SNP [dm3] 2R_9974422_SNP [dm6]	A	C	5.894e^-4	0.929	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13800917	3R_13800917_SNP [dm3] 3R_17975195_SNP [dm6]	C	T	5.895e^-4	0.929	INTRON cpo
2R	17603951	2R_17603951_DEL [dm3] 2R_21716446_DEL [dm6]	AA	A	5.911e^-4	0.929	UTR_3_PRIME HmgD DOWNSTREAM Tango11 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	8905963	3L_8905963_SNP [dm3] 3L_8912863_SNP [dm6]	A	C	5.912e^-4	0.929	UPSTREAM mfr INTRON Tsp66E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2L	13032192	2L_13032192_SNP [dm3] 2L_13032192_SNP [dm6]	T	C	5.918e^-4	0.929	INTRON CG9932
3L	5401676	3L_5401676_SNP [dm3] 3L_5408576_SNP [dm6]	A	G	5.918e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	17256642	X_17256642_SNP [dm3] X_17362609_SNP [dm6]	T	G	5.930e^-4	0.929	INTERGENIC
3R	27069105	3R_27069105_SNP [dm3] 3R_31243383_SNP [dm6]	G	T	5.941e^-4	0.929	INTRON qless
3R	10745441	3R_10745441_SNP [dm3] 3R_14919719_SNP [dm6]	A	C	5.947e^-4	0.929	NON_SYNONYMOUS_CODING Sdr
X	650734	X_650734_SNP [dm3] X_756701_SNP [dm6]	C	T	5.965e^-4	0.929	INTRON CG5254
3L	17693127	3L_17693127_SNP [dm3] 3L_17700027_SNP [dm6]	C	T	5.974e^-4	0.929	INTRON Ccn
3R	17670871	3R_17670871_SNP [dm3] 3R_21845149_SNP [dm6]	T	G	5.982e^-4	0.929	SYNONYMOUS_CODING Gr93c UPSTREAM CR44087 DOWNSTREAM Gr93d
3R	6325461	3R_6325461_SNP [dm3] 3R_10499739_SNP [dm6]	C	T	5.987e^-4	0.929	INTERGENIC
3R	14966901	3R_14966901_SNP [dm3] 3R_19141179_SNP [dm6]	G	A	5.997e^-4	0.929	UTR_3_PRIME Ppcs
3R	20225397	3R_20225397_SNP [dm3] 3R_24399675_SNP [dm6]	T	A	6.005e^-4	0.929	UTR_3_PRIME nAChRalpha1	TF binding site mE1_TFBS_run
3L	3266982	3L_3266982_SNP [dm3] 3L_3266982_SNP [dm6]	G	C	6.013e^-4	0.929	INTRON ckd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	3445803	3L_3445803_SNP [dm3] 3L_3445803_SNP [dm6]	G	C	6.022e^-4	0.929	INTRON eIF5B
2L	574192	2L_574192_SNP [dm3] 2L_574192_SNP [dm6]	A	G	6.028e^-4	0.929	UTR_5_PRIME Ipk2 UPSTREAM cold	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	9203346	X_9203346_DEL [dm3] X_9309313_DEL [dm6]	AAACCAAGTGTTA...	A	6.038e^-4	0.929	INTERGENIC
3L	1721484	3L_1721484_SNP [dm3] 3L_1721484_SNP [dm6]	A	G	6.054e^-4	0.929	SYNONYMOUS_CODING CG18171 INTRON drpr
3L	2369848	3L_2369848_SNP [dm3] 3L_2369848_SNP [dm6]	A	G	6.072e^-4	0.929	SYNONYMOUS_CODING CG1317	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19024900	X_19024900_SNP [dm3] X_19130867_SNP [dm6]	C	A	6.072e^-4	0.929	INTERGENIC
3R	5080317	3R_5080317_SNP [dm3] 3R_9254595_SNP [dm6]	C	T	6.074e^-4	0.929	UPSTREAM CG16734 EXON CR16735	TF binding site mE1_TFBS_inv
3L	17797832	3L_17797832_SNP [dm3] 3L_17804732_SNP [dm6]	G	T	6.077e^-4	0.929	UPSTREAM CG5589 DOWNSTREAM CG32187 INTERGENIC	TF binding site mE1_TFBS_eve
3L	20697314	3L_20697314_SNP [dm3] 3L_20704214_SNP [dm6]	A	T	6.085e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	9873922	3R_9873922_SNP [dm3] 3R_14048200_SNP [dm6]	G	A	6.103e^-4	0.929	INTERGENIC
3L	20728554	3L_20728554_SNP [dm3] 3L_20735454_SNP [dm6]	G	C	6.112e^-4	0.929	INTRON CG13252
2L	11618675	2L_11618675_SNP [dm3] 2L_11618675_SNP [dm6]	C	G	6.121e^-4	0.929	INTRON kek2
X	16052840	X_16052840_SNP [dm3] X_16158807_SNP [dm6]	A	G	6.135e^-4	0.929	INTERGENIC
3R	13892083	3R_13892083_SNP [dm3] 3R_18066361_SNP [dm6]	T	C	6.139e^-4	0.929	INTERGENIC
2L	18608672	2L_18608672_SNP [dm3] 2L_18608672_SNP [dm6]	C	T	6.148e^-4	0.929	SYNONYMOUS_CODING CG10333 DOWNSTREAM Atac2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6982430	2L_6982430_SNP [dm3] 2L_6982430_SNP [dm6]	C	A	6.152e^-4	0.929	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18686780	X_18686780_SNP [dm3] X_18792747_SNP [dm6]	A	T	6.181e^-4	0.929	UTR_3_PRIME Atg101 INTRON Pk17E
3L	17797936	3L_17797936_SNP [dm3] 3L_17804836_SNP [dm6]	C	T	6.193e^-4	0.929	UPSTREAM CG5589 DOWNSTREAM CG32187 INTERGENIC	TF binding site mE1_TFBS_cad
3L	17797937	3L_17797937_SNP [dm3] 3L_17804837_SNP [dm6]	T	G	6.193e^-4	0.929	UPSTREAM CG5589 DOWNSTREAM CG32187 INTERGENIC	TF binding site mE1_TFBS_cad
3R	15168075	3R_15168075_SNP [dm3] 3R_19342353_SNP [dm6]	A	T	6.198e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15168121	3R_15168121_SNP [dm3] 3R_19342399_SNP [dm6]	C	T	6.198e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26082852	3R_26082852_SNP [dm3] 3R_30257130_SNP [dm6]	A	T	6.199e^-4	0.929	INTERGENIC
2L	5890620	2L_5890620_SNP [dm3] 2L_5890620_SNP [dm6]	T	C	6.207e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3445271	3L_3445271_SNP [dm3] 3L_3445271_SNP [dm6]	A	T	6.220e^-4	0.929	INTRON eIF5B	insulator Insulator_Class_II.mE01
2L	14257336	2L_14257336_SNP [dm3] 2L_14257336_SNP [dm6]	T	C	6.225e^-4	0.929	INTERGENIC
3L	5998759	3L_5998759_SNP [dm3] 3L_6005659_SNP [dm6]	T	C	6.225e^-4	0.929	INTRON PVRAP
3L	5998968	3L_5998968_SNP [dm3] 3L_6005868_SNP [dm6]	G	A	6.225e^-4	0.929	INTRON PVRAP
3L	3886829	3L_3886829_DEL [dm3] 3L_3886829_DEL [dm6]	ATG	A	6.226e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	19162748	2R_19162748_SNP [dm3] 2R_23275225_SNP [dm6]	C	T	6.233e^-4	0.929	UTR_5_PRIME ord
2R	18606874	2R_18606874_SNP [dm3] 2R_22719369_SNP [dm6]	C	T	6.234e^-4	0.929	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12642227	2L_12642227_SNP [dm3] 2L_12642227_SNP [dm6]	G	A	6.239e^-4	0.929	INTRON Ref2
3R	10839381	3R_10839381_SNP [dm3] 3R_15013659_SNP [dm6]	C	T	6.246e^-4	0.929	INTERGENIC
2R	13303110	2R_13303110_SNP [dm3] 2R_17415605_SNP [dm6]	G	T	6.247e^-4	0.929	SYNONYMOUS_CODING cnk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	6403780	X_6403780_SNP [dm3] X_6509747_SNP [dm6]	C	G	6.249e^-4	0.929	INTRON CG42340	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	14834093	3R_14834093_SNP [dm3] 3R_19008371_SNP [dm6]	G	C	6.269e^-4	0.929	INTRON gukh	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	5882625	3R_5882625_SNP [dm3] 3R_10056903_SNP [dm6]	T	C	6.278e^-4	0.929	UPSTREAM Npc2d INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10383636	X_10383636_SNP [dm3] X_10489603_SNP [dm6]	C	A	6.282e^-4	0.929	DOWNSTREAM spri INTERGENIC
X	14251021	X_14251021_SNP [dm3] X_14356988_SNP [dm6]	G	A	6.292e^-4	0.929	INTRON dpr8
2L	3792860	2L_3792860_SNP [dm3] 2L_3792860_SNP [dm6]	T	A	6.307e^-4	0.929	SYNONYMOUS_CODING CG3921
2R	16013023	2R_16013023_SNP [dm3] 2R_20125518_SNP [dm6]	T	C	6.313e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_inv
X	9046523	X_9046523_SNP [dm3] X_9152490_SNP [dm6]	C	T	6.323e^-4	0.929	DOWNSTREAM His3.3B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	12151991	2R_12151991_SNP [dm3] 2R_16264486_SNP [dm6]	A	G	6.346e^-4	0.929	SYNONYMOUS_CODING fidipidine UPSTREAM csul	TF binding site mE1_TFBS_disco mE1_TFBS_sens
3L	895738	3L_895738_SNP [dm3] 3L_895738_SNP [dm6]	G	C	6.347e^-4	0.929	UPSTREAM CG34056 DOWNSTREAM CG32479 INTERGENIC
X	18836464	X_18836464_SNP [dm3] X_18942431_SNP [dm6]	T	G	6.349e^-4	0.929	INTRON CG43759
3L	5877280	3L_5877280_SNP [dm3] 3L_5884180_SNP [dm6]	C	T	6.353e^-4	0.929	DOWNSTREAM CG13287 INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	4457314	2L_4457314_DEL [dm3] 2L_4457314_DEL [dm6]	GG	G	6.361e^-4	0.929	UPSTREAM Gs1l DOWNSTREAM snoRNA:Me18S-C1831 INTRON RpL27A	TF binding site BDTNP1_TFBS_dl
X	4045895	X_4045895_SNP [dm3] X_4151862_SNP [dm6]	T	C	6.382e^-4	0.929	INTRON Fas2
X	4045908	X_4045908_SNP [dm3] X_4151875_SNP [dm6]	T	A	6.382e^-4	0.929	INTRON Fas2
3L	6983179	3L_6983179_SNP [dm3] 3L_6990079_SNP [dm6]	T	A	6.382e^-4	0.929	UPSTREAM bin INTERGENIC
3L	6983181	3L_6983181_SNP [dm3] 3L_6990081_SNP [dm6]	T	C	6.382e^-4	0.929	UPSTREAM bin INTERGENIC
3L	6983184	3L_6983184_SNP [dm3] 3L_6990084_SNP [dm6]	C	T	6.382e^-4	0.929	UPSTREAM bin INTERGENIC
2R	14226057	2R_14226057_SNP [dm3] 2R_18338552_SNP [dm6]	T	A	6.398e^-4	0.929	INTRON sbb	TF binding site BDTNP1_TFBS_dl
3L	18963783	3L_18963783_SNP [dm3] 3L_18970683_SNP [dm6]	C	T	6.399e^-4	0.929	INTERGENIC
3L	7306488	3L_7306488_SNP [dm3] 3L_7313388_SNP [dm6]	A	G	6.408e^-4	0.929	UPSTREAM unc-13-4A INTERGENIC
2R	12177248	2R_12177248_SNP [dm3] 2R_16289743_SNP [dm6]	T	C	6.418e^-4	0.929	SPLICE_SITE_REGION CR43730 UPSTREAM CG30099 INTRON CR43730 & 1 other
2R	15312220	2R_15312220_SNP [dm3] 2R_19424715_SNP [dm6]	G	T	6.418e^-4	0.929	UPSTREAM CalpA & 1 other INTRON hts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	19054492	3R_19054492_SNP [dm3] 3R_23228770_SNP [dm6]	A	C	6.420e^-4	0.929	UTR_3_PRIME CG4467	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	7653669	2R_7653669_SNP [dm3] 2R_11766164_SNP [dm6]	G	A	6.426e^-4	0.929	INTRON ths
3R	10680876	3R_10680876_SNP [dm3] 3R_14855154_SNP [dm6]	C	G	6.428e^-4	0.929	INTRON btsz
2L	8278029	2L_8278029_SNP [dm3] 2L_8278029_SNP [dm6]	C	T	6.435e^-4	0.929	UPSTREAM Btk29A INTRON Btk29A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	735523	X_735523_SNP [dm3] X_841490_SNP [dm6]	T	A	6.449e^-4	0.929	UPSTREAM CG43867 INTRON CG43867	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	735573	X_735573_SNP [dm3] X_841540_SNP [dm6]	C	T	6.449e^-4	0.929	UPSTREAM CG43867 INTRON CG43867	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	735574	X_735574_SNP [dm3] X_841541_SNP [dm6]	T	C	6.449e^-4	0.929	UPSTREAM CG43867 INTRON CG43867	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	738699	X_738699_SNP [dm3] X_844666_SNP [dm6]	T	C	6.449e^-4	0.929	UPSTREAM CG14635 INTRON CG43867	TF binding site mE1_TFBS_chinmo
X	739091	X_739091_SNP [dm3] X_845058_SNP [dm6]	A	G	6.449e^-4	0.929	SYNONYMOUS_CODING CG14635 INTRON CG43867
3R	5592466	3R_5592466_SNP [dm3] 3R_9766744_SNP [dm6]	T	G	6.453e^-4	0.929	DOWNSTREAM CG8478 INTRON MED6	TF binding site mE1_TFBS_sens
2L	12312293	2L_12312293_SNP [dm3] 2L_12312293_SNP [dm6]	A	G	6.464e^-4	0.929	UTR_3_PRIME aret INTRON aret
2R	8444193	2R_8444193_SNP [dm3] 2R_12556688_SNP [dm6]	A	T	6.470e^-4	0.929	NON_SYNONYMOUS_CODING fra	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8712325	2L_8712325_DEL [dm3] 2L_8712325_DEL [dm6]	TTAGTT	T	6.474e^-4	0.929	INTRON raw
2L	15397103	2L_15397103_SNP [dm3] 2L_15397103_SNP [dm6]	A	T	6.477e^-4	0.929	DOWNSTREAM CR44859 INTERGENIC
2L	9942627	2L_9942627_SNP [dm3] 2L_9942627_SNP [dm6]	G	C	6.506e^-4	0.929	SPLICE_SITE_REGION CG5853 UTR_3_PRIME CG4619 INTRON CG5853
3R	10756049	3R_10756049_SNP [dm3] 3R_14930327_SNP [dm6]	G	C	6.510e^-4	0.929	INTERGENIC
3R	19600210	3R_19600210_SNP [dm3] 3R_23774488_SNP [dm6]	G	A	6.529e^-4	0.929	UTR_3_PRIME Nup98-96 UPSTREAM CG10208
3L	4510388	3L_4510388_SNP [dm3] 3L_4510388_SNP [dm6]	T	A	6.558e^-4	0.929	DOWNSTREAM Tie INTERGENIC
2L	15397024	2L_15397024_SNP [dm3] 2L_15397024_SNP [dm6]	G	A	6.561e^-4	0.929	DOWNSTREAM CR44859 INTERGENIC
2R	14670032	2R_14670032_SNP [dm3] 2R_18782527_SNP [dm6]	G	A	6.578e^-4	0.929	UPSTREAM CG15080 INTERGENIC
X	2848654	X_2848654_SNP [dm3] X_2954621_SNP [dm6]	C	A	6.579e^-4	0.929	INTRON kirre & 1 other	TF binding site mE1_TFBS_cad
X	2848786	X_2848786_SNP [dm3] X_2954753_SNP [dm6]	G	A	6.579e^-4	0.929	SYNONYMOUS_CODING rst INTRON kirre	TF binding site mE1_TFBS_cad
X	2848798	X_2848798_SNP [dm3] X_2954765_SNP [dm6]	C	T	6.579e^-4	0.929	SYNONYMOUS_CODING rst INTRON kirre	TF binding site mE1_TFBS_cad
2L	21325401	2L_21325401_INS [dm3] 2L_21325401_INS [dm6]	A	ACAAGAAA	6.585e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_HSA
X	18882610	X_18882610_SNP [dm3] X_18988577_SNP [dm6]	A	T	6.590e^-4	0.929	INTRON CG43759
2L	12854088	2L_12854088_DEL [dm3] 2L_12854088_DEL [dm6]	TTCCACACAT	T	6.601e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12854126	2L_12854126_SNP [dm3] 2L_12854126_SNP [dm6]	A	C	6.601e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9179894	2L_9179894_SNP [dm3] 2L_9179894_SNP [dm6]	T	C	6.614e^-4	0.929	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9179899	2L_9179899_SNP [dm3] 2L_9179899_SNP [dm6]	C	T	6.614e^-4	0.929	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8728048	3L_8728048_SNP [dm3] 3L_8734948_SNP [dm6]	C	G	6.638e^-4	0.929	INTRON Prm	TF binding site mE1_TFBS_cad
2R	18827470	2R_18827470_SNP [dm3] 2R_22939947_SNP [dm6]	C	G	6.643e^-4	0.929	SYNONYMOUS_CODING CG3831 DOWNSTREAM CG9849
2L	10213475	2L_10213475_SNP [dm3] 2L_10213475_SNP [dm6]	T	C	6.659e^-4	0.929	SYNONYMOUS_CODING CG4901 DOWNSTREAM Npc1a
3R	17668660	3R_17668660_SNP [dm3] 3R_21842938_SNP [dm6]	A	C	6.660e^-4	0.929	SYNONYMOUS_CODING Gr93b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7041901	2R_7041901_SNP [dm3] 2R_11154396_SNP [dm6]	G	A	6.666e^-4	0.929	UPSTREAM CG13230 INTRON CG13229
2R	7041915	2R_7041915_SNP [dm3] 2R_11154410_SNP [dm6]	A	G	6.666e^-4	0.929	UPSTREAM CG13230 INTRON CG13229
3R	15252416	3R_15252416_SNP [dm3] 3R_19426694_SNP [dm6]	G	C	6.681e^-4	0.929	INTRON CG31221
3L	14229953	3L_14229953_SNP [dm3] 3L_14236853_SNP [dm6]	A	T	6.695e^-4	0.929	UPSTREAM CG34244 INTRON CG7906	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	22327910	3R_22327910_SNP [dm3] 3R_26502188_SNP [dm6]	T	C	6.715e^-4	0.929	INTRON plum
2L	16483742	2L_16483742_INS [dm3] 2L_16483742_INS [dm6]	T	TT	6.725e^-4	0.929	INTRON dac	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19987302	3R_19987302_SNP [dm3] 3R_24161580_SNP [dm6]	T	A	6.738e^-4	0.929	UPSTREAM CG6182 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	950104	3R_950104_SNP [dm3] 3R_5124382_SNP [dm6]	T	A	6.756e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3022838	3L_3022838_SNP [dm3] 3L_3022838_SNP [dm6]	A	C	6.766e^-4	0.929	INTERGENIC
3R	3983151	3R_3983151_SNP [dm3] 3R_8157429_SNP [dm6]	T	A	6.770e^-4	0.929	INTRON grn	TF binding site mE1_TFBS_Kr
3L	1721622	3L_1721622_SNP [dm3] 3L_1721622_SNP [dm6]	A	G	6.785e^-4	0.929	SYNONYMOUS_CODING CG18171 INTRON drpr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1721630	3L_1721630_SNP [dm3] 3L_1721630_SNP [dm6]	A	G	6.785e^-4	0.929	SYNONYMOUS_CODING CG18171 INTRON drpr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3143708	X_3143708_SNP [dm3] X_3249675_SNP [dm6]	G	C	6.786e^-4	0.929	UTR_5_PRIME Sgs4 UPSTREAM Pig1 INTRON dnc	regulatory region REDfly_CRMs
2L	12796658	2L_12796658_INS [dm3] 2L_12796658_INS [dm6]	A	AAGCACA	6.789e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	21714518	3L_21714518_INS [dm3] 3L_21721418_INS [dm6]	T	TC	6.796e^-4	0.929	INTERGENIC
3R	1905942	3R_1905942_SNP [dm3] 3R_6080220_SNP [dm6]	T	C	6.808e^-4	0.929	INTERGENIC
3R	20944022	3R_20944022_SNP [dm3] 3R_25118300_SNP [dm6]	T	C	6.813e^-4	0.929	SYNONYMOUS_CODING CG31510 INTRON CG31108	TF binding site mE1_TFBS_sens
3L	17040295	3L_17040295_SNP [dm3] 3L_17047195_SNP [dm6]	A	G	6.814e^-4	0.929	INTRON TpnC73F
3R	9320003	3R_9320003_SNP [dm3] 3R_13494281_SNP [dm6]	C	A	6.817e^-4	0.929	INTERGENIC
3L	3112576	3L_3112576_SNP [dm3] 3L_3112576_SNP [dm6]	A	T	6.827e^-4	0.929	INTRON CG45067
2L	3753469	2L_3753469_SNP [dm3] 2L_3753469_SNP [dm6]	A	C	6.849e^-4	0.929	UTR_3_PRIME CG10019 DOWNSTREAM CG10019
3R	19599882	3R_19599882_INS [dm3] 3R_23774160_INS [dm6]	C	CCCC	6.861e^-4	0.929	UPSTREAM CG10208 DOWNSTREAM Nup98-96 INTERGENIC	TF binding site mE1_TFBS_cad
2L	5445357	2L_5445357_SNP [dm3] 2L_5445357_SNP [dm6]	G	A	6.862e^-4	0.929	INTERGENIC
3R	7727823	3R_7727823_SNP [dm3] 3R_11902101_SNP [dm6]	A	T	6.862e^-4	0.929	INTRON Cad87A
3L	9258039	3L_9258039_SNP [dm3] 3L_9264939_SNP [dm6]	G	C	6.896e^-4	0.929	INTRON GluRIB
2L	16052635	2L_16052635_SNP [dm3] 2L_16052635_SNP [dm6]	T	C	6.898e^-4	0.929	INTRON beat-Ia
2L	5771631	2L_5771631_SNP [dm3] 2L_5771631_SNP [dm6]	G	T	6.908e^-4	0.929	DOWNSTREAM CR31912 INTRON CG9171	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_zfh1
3R	16897567	3R_16897567_SNP [dm3] 3R_21071845_SNP [dm6]	A	G	6.909e^-4	0.929	DOWNSTREAM AnxB9 INTRON r-l	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15226160	2R_15226160_INS [dm3] 2R_19338655_INS [dm6]	A	AA	6.910e^-4	0.929	INTRON Rgk1
2L	6712541	2L_6712541_SNP [dm3] 2L_6712541_SNP [dm6]	A	T	6.918e^-4	0.929	SYNONYMOUS_CODING AkhR
3L	17797984	3L_17797984_SNP [dm3] 3L_17804884_SNP [dm6]	A	T	6.924e^-4	0.929	UPSTREAM CG5589 DOWNSTREAM CG32187 INTERGENIC	TF binding site mE1_TFBS_cad
2R	11443414	2R_11443414_SNP [dm3] 2R_15555909_SNP [dm6]	T	C	6.930e^-4	0.929	UPSTREAM CG12963 INTRON CG12963
3L	14523805	3L_14523805_SNP [dm3] 3L_14530705_SNP [dm6]	A	T	6.934e^-4	0.929	INTRON bbg
3L	9375944	3L_9375944_SNP [dm3] 3L_9382844_SNP [dm6]	C	A	6.938e^-4	0.929	DOWNSTREAM Hsp23 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	8363958	2R_8363958_SNP [dm3] 2R_12476453_SNP [dm6]	G	A	6.940e^-4	0.929	INTRON Dh44-R2
2R	8363961	2R_8363961_SNP [dm3] 2R_12476456_SNP [dm6]	T	C	6.940e^-4	0.929	INTRON Dh44-R2
2R	8363963	2R_8363963_SNP [dm3] 2R_12476458_SNP [dm6]	A	G	6.940e^-4	0.929	INTRON Dh44-R2
2R	8363970	2R_8363970_SNP [dm3] 2R_12476465_SNP [dm6]	A	G	6.940e^-4	0.929	INTRON Dh44-R2
3L	3111268	3L_3111268_SNP [dm3] 3L_3111268_SNP [dm6]	G	T	6.948e^-4	0.929	UPSTREAM CG45066 DOWNSTREAM CG45067 INTERGENIC
3R	13762793	3R_13762793_SNP [dm3] 3R_17937071_SNP [dm6]	C	T	6.958e^-4	0.929	INTRON cpo
2R	6764250	2R_6764250_SNP [dm3] 2R_10876745_SNP [dm6]	A	G	6.971e^-4	0.929	SYNONYMOUS_CODING nclb DOWNSTREAM Taf5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	6250393	X_6250393_SNP [dm3] X_6356360_SNP [dm6]	T	A	6.980e^-4	0.929	INTRON kdn
2R	15260684	2R_15260684_SNP [dm3] 2R_19373179_SNP [dm6]	T	A	7.002e^-4	0.929	UTR_5_PRIME CG9416 INTRON CG9416	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	10681502	3R_10681502_DEL [dm3] 3R_14855780_DEL [dm6]	AA	A	7.011e^-4	0.929	INTRON btsz
X	18476066	X_18476066_INS [dm3] X_18582033_INS [dm6]	C	CTTCCCC	7.012e^-4	0.929	INTERGENIC
X	17923611	X_17923611_SNP [dm3] X_18029578_SNP [dm6]	C	T	7.022e^-4	0.929	INTRON Sh
2R	14673805	2R_14673805_INS [dm3] 2R_18786300_INS [dm6]	T	TT	7.024e^-4	0.929	INTRON CG15080	enhancer mE1_CBP_Enhancers
3L	9709665	3L_9709665_INS [dm3] 3L_9716565_INS [dm6]	A	AGA	7.029e^-4	0.929	UTR_3_PRIME vsg UPSTREAM snmRNA:838
3L	19284303	3L_19284303_SNP [dm3] 3L_19291203_SNP [dm6]	T	A	7.033e^-4	0.929	INTRON Gbs-76A
2R	18481833	2R_18481833_SNP [dm3] 2R_22594328_SNP [dm6]	C	T	7.035e^-4	0.929	UPSTREAM CG3927 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8206368	2L_8206368_SNP [dm3] 2L_8206368_SNP [dm6]	C	A	7.049e^-4	0.929	SYNONYMOUS_CODING CG8419 UPSTREAM CR44120 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10964068	3R_10964068_SNP [dm3] 3R_15138346_SNP [dm6]	C	A	7.051e^-4	0.929	SYNONYMOUS_CODING CG3984 EXON CR45600	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6591933	2L_6591933_SNP [dm3] 2L_6591933_SNP [dm6]	C	G	7.059e^-4	0.929	INTRON CG11319
3R	6847823	3R_6847823_SNP [dm3] 3R_11022101_SNP [dm6]	T	C	7.063e^-4	0.929	INTRON CG34114
2L	18152209	2L_18152209_SNP [dm3] 2L_18152209_SNP [dm6]	A	T	7.074e^-4	0.929	SPLICE_SITE_REGION Socs36E UTR_5_PRIME Socs36E UPSTREAM CG17681	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E
3R	27212910	3R_27212910_SNP [dm3] 3R_31387188_SNP [dm6]	C	T	7.075e^-4	0.929	SYNONYMOUS_CODING CG1607	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2R	14207577	2R_14207577_SNP [dm3] 2R_18320072_SNP [dm6]	A	G	7.075e^-4	0.929	INTRON sbb
2R	19380563	2R_19380563_SNP [dm3] 2R_23493040_SNP [dm6]	C	G	7.095e^-4	0.929	INTERGENIC
3L	3390432	3L_3390432_SNP [dm3] 3L_3390432_SNP [dm6]	G	A	7.126e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	9644214	2R_9644214_SNP [dm3] 2R_13756709_SNP [dm6]	G	A	7.129e^-4	0.929	NON_SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5147200	3L_5147200_SNP [dm3] 3L_5154100_SNP [dm6]	C	T	7.129e^-4	0.929	SYNONYMOUS_CODING Srp54k	TF binding site mE1_TFBS_sens
3L	7098177	3L_7098177_SNP [dm3] 3L_7105077_SNP [dm6]	T	A	7.129e^-4	0.929	INTRON form3
3L	7098186	3L_7098186_SNP [dm3] 3L_7105086_SNP [dm6]	A	T	7.129e^-4	0.929	INTRON form3
3R	22049753	3R_22049753_SNP [dm3] 3R_26224031_SNP [dm6]	C	T	7.139e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	9735626	3L_9735626_SNP [dm3] 3L_9742526_SNP [dm6]	G	A	7.140e^-4	0.929	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_inv
2L	15357876	2L_15357876_SNP [dm3] 2L_15357876_SNP [dm6]	T	C	7.150e^-4	0.929	INTERGENIC
3L	2276223	3L_2276223_SNP [dm3] 3L_2276223_SNP [dm6]	T	C	7.153e^-4	0.929	UPSTREAM yellow-g2 INTERGENIC
3L	5026490	3L_5026490_SNP [dm3] 3L_5026490_SNP [dm6]	T	A	7.155e^-4	0.929	INTRON Con
2L	8254411	2L_8254411_SNP [dm3] 2L_8254411_SNP [dm6]	T	C	7.174e^-4	0.929	INTRON CG8086	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3422191	3L_3422191_SNP [dm3] 3L_3422191_SNP [dm6]	C	A	7.175e^-4	0.929	INTRON sty
2L	9947492	2L_9947492_SNP [dm3] 2L_9947492_SNP [dm6]	A	T	7.180e^-4	0.929	START_GAINED CG5853 UTR_5_PRIME CG5853 UPSTREAM CG5853
3L	16249206	3L_16249206_SNP [dm3] 3L_16256106_SNP [dm6]	T	C	7.188e^-4	0.929	SYNONYMOUS_CODING CG13054	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	10701569	3R_10701569_SNP [dm3] 3R_14875847_SNP [dm6]	T	A	7.219e^-4	0.929	UPSTREAM btsz INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	10701570	3R_10701570_SNP [dm3] 3R_14875848_SNP [dm6]	A	T	7.219e^-4	0.929	UPSTREAM btsz INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	16721238	2R_16721238_DEL [dm3] 2R_20833733_DEL [dm6]	AAT	A	7.235e^-4	0.929	INTRON insc & 1 other
3R	4567558	3R_4567558_SNP [dm3] 3R_8741836_SNP [dm6]	T	A	7.237e^-4	0.929	INTRON CG9801
2L	17450969	2L_17450969_SNP [dm3] 2L_17450969_SNP [dm6]	C	G	7.242e^-4	0.929	UPSTREAM dl INTERGENIC	TF binding site mE1_TFBS_cnc
3R	18597687	3R_18597687_INS [dm3] 3R_22771965_INS [dm6]	A	AGCTGTGAATGATAGTTTC...	7.279e^-4	0.929	UPSTREAM CG43094 & 1 other INTRON Usp12-46 & 1 other
X	9210687	X_9210687_SNP [dm3] X_9316654_SNP [dm6]	G	A	7.308e^-4	0.929	INTERGENIC
2L	8246847	2L_8246847_SNP [dm3] 2L_8246847_SNP [dm6]	C	A	7.324e^-4	0.929	INTRON CG8086
2L	17490787	2L_17490787_SNP [dm3] 2L_17490787_SNP [dm6]	A	G	7.343e^-4	0.929	INTRON qua	TF binding site mE1_TFBS_HSA
3L	10258640	3L_10258640_SNP [dm3] 3L_10265540_SNP [dm6]	A	T	7.345e^-4	0.929	NON_SYNONYMOUS_CODING can	TF binding site mE1_TFBS_sens
2R	6744404	2R_6744404_SNP [dm3] 2R_10856899_SNP [dm6]	C	T	7.360e^-4	0.929	INTRON CG30015
X	18891475	X_18891475_SNP [dm3] X_18997442_SNP [dm6]	A	T	7.373e^-4	0.929	INTRON CG43759
X	18845885	X_18845885_SNP [dm3] X_18951852_SNP [dm6]	C	G	7.382e^-4	0.929	INTRON CG43759
3L	3446166	3L_3446166_DEL [dm3] 3L_3446166_DEL [dm6]	CAA	C	7.383e^-4	0.929	INTRON eIF5B
2L	15397026	2L_15397026_SNP [dm3] 2L_15397026_SNP [dm6]	A	G	7.392e^-4	0.929	DOWNSTREAM CR44859 INTERGENIC
2L	15942877	2L_15942877_SNP [dm3] 2L_15942877_SNP [dm6]	T	A	7.400e^-4	0.929	DOWNSTREAM CG12448 INTRON beat-Ib
3L	5846554	3L_5846554_SNP [dm3] 3L_5853454_SNP [dm6]	C	T	7.401e^-4	0.929	INTERGENIC
X	17256563	X_17256563_DEL [dm3] X_17362530_DEL [dm6]	TCA	T	7.421e^-4	0.929	INTERGENIC
X	17256646	X_17256646_SNP [dm3] X_17362613_SNP [dm6]	A	G	7.421e^-4	0.929	INTERGENIC
X	19026022	X_19026022_SNP [dm3] X_19131989_SNP [dm6]	A	G	7.424e^-4	0.929	UPSTREAM CR45711 INTERGENIC
3L	7306519	3L_7306519_SNP [dm3] 3L_7313419_SNP [dm6]	G	T	7.430e^-4	0.929	UPSTREAM unc-13-4A INTERGENIC
3L	7306521	3L_7306521_DEL [dm3] 3L_7313421_DEL [dm6]	GGT	G	7.430e^-4	0.929	UPSTREAM unc-13-4A INTERGENIC
3L	7306526	3L_7306526_SNP [dm3] 3L_7313426_SNP [dm6]	A	C	7.430e^-4	0.929	UPSTREAM unc-13-4A INTERGENIC
3L	5502701	3L_5502701_SNP [dm3] 3L_5509601_SNP [dm6]	C	T	7.430e^-4	0.929	INTRON CG34342	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	14661113	X_14661113_SNP [dm3] X_14767080_SNP [dm6]	A	G	7.463e^-4	0.929	INTERGENIC
2L	3753488	2L_3753488_SNP [dm3] 2L_3753488_SNP [dm6]	G	A	7.469e^-4	0.929	UTR_3_PRIME CG10019 DOWNSTREAM CG10019
2L	14489106	2L_14489106_SNP [dm3] 2L_14489106_SNP [dm6]	A	G	7.480e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	14563373	2R_14563373_SNP [dm3] 2R_18675868_SNP [dm6]	A	G	7.483e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	7977005	X_7977005_SNP [dm3] X_8082972_SNP [dm6]	A	C	7.492e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	11696695	2L_11696695_SNP [dm3] 2L_11696695_SNP [dm6]	G	T	7.493e^-4	0.929	DOWNSTREAM CG4988 INTERGENIC
2R	7050752	2R_7050752_INS [dm3] 2R_11163247_INS [dm6]	A	ATGGG	7.517e^-4	0.929	INTRON shn & 1 other
3L	6983174	3L_6983174_SNP [dm3] 3L_6990074_SNP [dm6]	A	G	7.523e^-4	0.929	UPSTREAM bin INTERGENIC
3R	11299561	3R_11299561_SNP [dm3] 3R_15473839_SNP [dm6]	A	G	7.527e^-4	0.929	INTRON AdamTS-A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26056024	3R_26056024_SNP [dm3] 3R_30230302_SNP [dm6]	A	C	7.528e^-4	0.929	INTERGENIC
3R	11120110	3R_11120110_SNP [dm3] 3R_15294388_SNP [dm6]	G	T	7.534e^-4	0.929	INTRON Tm1	TF binding site mE1_TFBS_HSA
3L	5798846	3L_5798846_SNP [dm3] 3L_5805746_SNP [dm6]	A	G	7.550e^-4	0.929	UTR_3_PRIME CG42272 INTRON S6k
X	10351910	X_10351910_SNP [dm3] X_10457877_SNP [dm6]	T	C	7.556e^-4	0.929	DOWNSTREAM Or9a INTERGENIC
3L	17556408	3L_17556408_SNP [dm3] 3L_17563308_SNP [dm6]	G	T	7.580e^-4	0.929	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	17078601	2R_17078601_SNP [dm3] 2R_21191096_SNP [dm6]	A	G	7.580e^-4	0.929	NON_SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	2848645	X_2848645_INS [dm3] X_2954612_INS [dm6]	A	GAG	7.583e^-4	0.929	INTRON kirre & 1 other	TF binding site mE1_TFBS_cad
2L	8712340	2L_8712340_INS [dm3] 2L_8712340_INS [dm6]	G	GAC	7.594e^-4	0.929	INTRON raw
2L	8712348	2L_8712348_SNP [dm3] 2L_8712348_SNP [dm6]	G	A	7.594e^-4	0.929	INTRON raw
2L	8712373	2L_8712373_INS [dm3] 2L_8712373_INS [dm6]	A	ATGATTCTTCACA...	7.594e^-4	0.929	INTRON raw
3L	2605021	3L_2605021_SNP [dm3] 3L_2605021_SNP [dm6]	G	T	7.598e^-4	0.929	INTRON Pxn
3R	6125749	3R_6125749_SNP [dm3] 3R_10300027_SNP [dm6]	C	G	7.599e^-4	0.929	UTR_3_PRIME CG43143 DOWNSTREAM CG43143 INTRON CG43143
3L	17797771	3L_17797771_SNP [dm3] 3L_17804671_SNP [dm6]	G	A	7.612e^-4	0.929	UTR_5_PRIME CG5589 DOWNSTREAM CG32187	TF binding site mE1_TFBS_cad mE1_TFBS_eve
3R	18605560	3R_18605560_SNP [dm3] 3R_22779838_SNP [dm6]	C	G	7.619e^-4	0.929	UPSTREAM CR43654 INTRON CG7029 EXON CR43654	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9356853	3L_9356853_SNP [dm3] 3L_9363753_SNP [dm6]	G	A	7.625e^-4	0.929	NON_SYNONYMOUS_CODING Klp67A UPSTREAM CG4447
X	6451064	X_6451064_SNP [dm3] X_6557031_SNP [dm6]	G	T	7.626e^-4	0.929	SYNONYMOUS_CODING CG34417 INTRON CG34417
2R	17344217	2R_17344217_SNP [dm3] 2R_21456712_SNP [dm6]	A	T	7.636e^-4	0.929	INTRON Sdc
3R	10599109	3R_10599109_SNP [dm3] 3R_14773387_SNP [dm6]	G	C	7.652e^-4	0.929	INTRON jvl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9742348	3L_9742348_SNP [dm3] 3L_9749248_SNP [dm6]	A	G	7.663e^-4	0.929	SYNONYMOUS_CODING CG42268	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	17505134	2L_17505134_SNP [dm3] 2L_17505134_SNP [dm6]	T	C	7.689e^-4	0.929	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_sens
3L	8970208	3L_8970208_SNP [dm3] 3L_8977108_SNP [dm6]	C	T	7.698e^-4	0.929	SYNONYMOUS_CODING Srp68 DOWNSTREAM CG5644	TF binding site mE1_TFBS_cad
2R	10630988	2R_10630988_SNP [dm3] 2R_14743483_SNP [dm6]	C	A	7.726e^-4	0.929	SYNONYMOUS_CODING CG12858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12318050	3L_12318050_SNP [dm3] 3L_12324950_SNP [dm6]	A	T	7.736e^-4	0.929	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	5836939	2R_5836939_SNP [dm3] 2R_9949434_SNP [dm6]	T	C	7.736e^-4	0.929	INTRON Mef2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17384834	2R_17384834_SNP [dm3] 2R_21497329_SNP [dm6]	A	T	7.738e^-4	0.929	UPSTREAM Fkbp14 INTRON Fkbp14	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17384902	2R_17384902_SNP [dm3] 2R_21497397_SNP [dm6]	A	C	7.738e^-4	0.929	UPSTREAM Fkbp14 INTRON Fkbp14	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9431146	2R_9431146_SNP [dm3] 2R_13543641_SNP [dm6]	G	T	7.739e^-4	0.929	INTRON CG6145
2R	9431161	2R_9431161_SNP [dm3] 2R_13543656_SNP [dm6]	C	T	7.739e^-4	0.929	INTRON CG6145
2R	9431208	2R_9431208_SNP [dm3] 2R_13543703_SNP [dm6]	G	A	7.739e^-4	0.929	INTRON CG6145
2R	9431230	2R_9431230_SNP [dm3] 2R_13543725_SNP [dm6]	C	T	7.739e^-4	0.929	INTRON CG6145
2R	9431237	2R_9431237_INS [dm3] 2R_13543732_INS [dm6]	C	CACACCAGC	7.739e^-4	0.929	INTRON CG6145
3L	8921780	3L_8921780_SNP [dm3] 3L_8928680_SNP [dm6]	A	C	7.740e^-4	0.929	INTRON Tsp66E
2L	8492858	2L_8492858_SNP [dm3] 2L_8492858_SNP [dm6]	A	G	7.749e^-4	0.929	INTRON Dh31
3R	7876369	3R_7876369_SNP [dm3] 3R_12050647_SNP [dm6]	A	G	7.751e^-4	0.929	INTERGENIC
2R	14322140	2R_14322140_SNP [dm3] 2R_18434635_SNP [dm6]	T	A	7.753e^-4	0.929	INTRON CG30118
3L	10141554	3L_10141554_DEL [dm3] 3L_10148454_DEL [dm6]	GCATTCTCCGAGTTCCCATA...	G	7.785e^-4	0.929	UTR_3_PRIME dpr10
3R	19045539	3R_19045539_SNP [dm3] 3R_23219817_SNP [dm6]	G	A	7.791e^-4	0.929	INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	19045547	3R_19045547_SNP [dm3] 3R_23219825_SNP [dm6]	A	T	7.791e^-4	0.929	INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14978238	3L_14978238_SNP [dm3] 3L_14985138_SNP [dm6]	G	A	7.794e^-4	0.929	UTR_5_PRIME mnd DOWNSTREAM CG5114	TF binding site mE1_TFBS_Kr
3R	19021889	3R_19021889_DEL [dm3] 3R_23196167_DEL [dm6]	ATAA	A	7.796e^-4	0.929	INTRON cnc	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5494442	3L_5494442_SNP [dm3] 3L_5501342_SNP [dm6]	G	T	7.821e^-4	0.929	EXON CR44519
2L	14171935	2L_14171935_INS [dm3] 2L_14171935_INS [dm6]	A	AAATCACAATACTATTTAA...	7.829e^-4	0.929	INTRON CG43333
2R	16579210	2R_16579210_SNP [dm3] 2R_20691705_SNP [dm6]	T	G	7.832e^-4	0.929	UPSTREAM CR44659 INTERGENIC
3L	7306503	3L_7306503_SNP [dm3] 3L_7313403_SNP [dm6]	T	G	7.836e^-4	0.929	UPSTREAM unc-13-4A INTERGENIC
3L	8724114	3L_8724114_SNP [dm3] 3L_8731014_SNP [dm6]	T	C	7.843e^-4	0.929	UPSTREAM Cp16 DOWNSTREAM Cp19 INTERGENIC
2L	8189840	2L_8189840_SNP [dm3] 2L_8189840_SNP [dm6]	A	G	7.858e^-4	0.929	UTR_3_PRIME Piezo DOWNSTREAM CG34134 & 1 other
2L	17095064	2L_17095064_SNP [dm3] 2L_17095064_SNP [dm6]	A	G	7.865e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_inv
2L	6775114	2L_6775114_SNP [dm3] 2L_6775114_SNP [dm6]	C	T	7.874e^-4	0.929	UPSTREAM CG17378 INTRON CG17378
X	6619041	X_6619041_SNP [dm3] X_6725008_SNP [dm6]	A	G	7.889e^-4	0.929	INTRON CG3168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_HSA
X	2830177	X_2830177_SNP [dm3] X_2936144_SNP [dm6]	C	T	7.891e^-4	0.929	UPSTREAM CG3598 DOWNSTREAM CG3592 INTRON kirre
2L	21976772	2L_21976772_SNP [dm3] 2L_21976772_SNP [dm6]	T	C	7.901e^-4	0.929	INTERGENIC
2L	1786199	2L_1786199_SNP [dm3] 2L_1786199_SNP [dm6]	G	C	7.904e^-4	0.929	DOWNSTREAM Gr22e INTERGENIC
2L	921276	2L_921276_SNP [dm3] 2L_921276_SNP [dm6]	G	A	7.905e^-4	0.929	INTERGENIC
2L	921609	2L_921609_SNP [dm3] 2L_921609_SNP [dm6]	C	T	7.905e^-4	0.929	INTERGENIC
2L	921836	2L_921836_SNP [dm3] 2L_921836_SNP [dm6]	T	G	7.905e^-4	0.929	UPSTREAM CG4341 INTERGENIC
2L	3786208	2L_3786208_SNP [dm3] 2L_3786208_SNP [dm6]	C	G	7.911e^-4	0.929	SYNONYMOUS_CODING CG31958 UPSTREAM CG3921 DOWNSTREAM CG31960	TF binding site mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	6129471	3R_6129471_SNP [dm3] 3R_10303749_SNP [dm6]	T	C	7.918e^-4	0.929	SYNONYMOUS_CODING CG43143 DOWNSTREAM CG43143	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4269499	2R_4269499_SNP [dm3] 2R_8381994_SNP [dm6]	G	A	7.918e^-4	0.929	INTRON pdm3
X	1067461	X_1067461_SNP [dm3] X_1173428_SNP [dm6]	T	G	7.930e^-4	0.929	UTR_3_PRIME CG11378 DOWNSTREAM CG11378 & 1 other
2L	1040040	2L_1040040_SNP [dm3] 2L_1040040_SNP [dm6]	T	C	7.939e^-4	0.929	INTRON IA-2	TF binding site mE1_TFBS_chinmo
2R	5836860	2R_5836860_DEL [dm3] 2R_9949355_DEL [dm6]	GGACAACTAGA...	G	7.940e^-4	0.929	INTRON Mef2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5699230	3L_5699230_SNP [dm3] 3L_5706130_SNP [dm6]	G	A	7.941e^-4	0.929	INTRON sif	TF binding site mE1_TFBS_cad
3L	5699232	3L_5699232_SNP [dm3] 3L_5706132_SNP [dm6]	C	T	7.941e^-4	0.929	INTRON sif	TF binding site mE1_TFBS_cad
2R	10399809	2R_10399809_INS [dm3] 2R_14512304_INS [dm6]	A	AA	7.947e^-4	0.929	UTR_3_PRIME Asx DOWNSTREAM Cpr51A	TF binding site mE1_TFBS_D mE1_TFBS_HSA
X	12584379	X_12584379_SNP [dm3] X_12690346_SNP [dm6]	G	C	7.948e^-4	0.929	SYNONYMOUS_CODING Smr	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_kni BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13300412	3L_13300412_SNP [dm3] 3L_13307312_SNP [dm6]	C	T	7.956e^-4	0.929	INTERGENIC
3L	13300426	3L_13300426_SNP [dm3] 3L_13307326_SNP [dm6]	A	C	7.956e^-4	0.929	INTERGENIC
3L	13300438	3L_13300438_SNP [dm3] 3L_13307338_SNP [dm6]	G	A	7.956e^-4	0.929	INTERGENIC
2L	18221642	2L_18221642_SNP [dm3] 2L_18221642_SNP [dm6]	A	T	7.958e^-4	0.929	INTRON CG42750
2L	7071116	2L_7071116_SNP [dm3] 2L_7071116_SNP [dm6]	T	C	7.959e^-4	0.929	INTRON Pvf2
2L	7071139	2L_7071139_SNP [dm3] 2L_7071139_SNP [dm6]	A	G	7.959e^-4	0.929	INTRON Pvf2
2R	7050737	2R_7050737_SNP [dm3] 2R_11163232_SNP [dm6]	T	A	7.964e^-4	0.929	INTRON shn & 1 other
2L	22002895	2L_22002895_SNP [dm3] 2L_22002895_SNP [dm6]	G	A	7.965e^-4	0.929	INTERGENIC	transposable element FlyBase
X	4793872	X_4793872_SNP [dm3] X_4899839_SNP [dm6]	G	T	7.974e^-4	0.929	INTRON CG42594
3L	8792342	3L_8792342_SNP [dm3] 3L_8799242_SNP [dm6]	G	A	7.996e^-4	0.929	SYNONYMOUS_CODING CG13310 DOWNSTREAM Fhos
2R	9120107	2R_9120107_SNP [dm3] 2R_13232602_SNP [dm6]	A	C	8.005e^-4	0.929	DOWNSTREAM fsd INTRON CG4670	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	10567062	3L_10567062_SNP [dm3] 3L_10573962_SNP [dm6]	T	A	8.008e^-4	0.929	SYNONYMOUS_CODING A2bp1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9915694	3L_9915694_SNP [dm3] 3L_9922594_SNP [dm6]	G	C	8.037e^-4	0.929	INTRON CG34356
2L	18613841	2L_18613841_SNP [dm3] 2L_18613841_SNP [dm6]	A	G	8.045e^-4	0.929	DOWNSTREAM CG15161 INTERGENIC
X	20009201	X_20009201_SNP [dm3] X_20115168_SNP [dm6]	G	A	8.048e^-4	0.929	INTERGENIC
2R	6755779	2R_6755779_SNP [dm3] 2R_10868274_SNP [dm6]	T	G	8.050e^-4	0.929	INTRON CG30015
3R	6077528	3R_6077528_SNP [dm3] 3R_10251806_SNP [dm6]	C	T	8.059e^-4	0.929	DOWNSTREAM CG42795 INTRON CG3999
3L	9921132	3L_9921132_SNP [dm3] 3L_9928032_SNP [dm6]	T	C	8.071e^-4	0.929	INTRON CG34356	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18859643	2R_18859643_SNP [dm3] 2R_22972120_SNP [dm6]	T	C	8.071e^-4	0.929	INTERGENIC
3R	18533781	3R_18533781_SNP [dm3] 3R_22708059_SNP [dm6]	G	A	8.079e^-4	0.929	SYNONYMOUS_CODING CG4907 UPSTREAM CG13842
2L	18298243	2L_18298243_SNP [dm3] 2L_18298243_SNP [dm6]	G	A	8.095e^-4	0.929	DOWNSTREAM CG5790 INTERGENIC	TF binding site mE1_TFBS_inv
2L	18298252	2L_18298252_SNP [dm3] 2L_18298252_SNP [dm6]	A	T	8.095e^-4	0.929	DOWNSTREAM CG5790 INTERGENIC	TF binding site mE1_TFBS_inv
2L	18298274	2L_18298274_SNP [dm3] 2L_18298274_SNP [dm6]	G	T	8.095e^-4	0.929	DOWNSTREAM CG5790 INTERGENIC	TF binding site mE1_TFBS_inv
3L	8944166	3L_8944166_SNP [dm3] 3L_8951066_SNP [dm6]	G	A	8.115e^-4	0.929	INTRON orb2 & 1 other
2L	13441145	2L_13441145_SNP [dm3] 2L_13441145_SNP [dm6]	T	G	8.142e^-4	0.929	INTRON CG42784 EXON CR45683	TF binding site mE1_TFBS_inv
3L	19021075	3L_19021075_SNP [dm3] 3L_19027975_SNP [dm6]	C	T	8.161e^-4	0.929	INTRON nkd
X	15329527	X_15329527_SNP [dm3] X_15435494_SNP [dm6]	A	G	8.166e^-4	0.929	INTRON Cngl
3R	23036625	3R_23036625_SNP [dm3] 3R_27210903_SNP [dm6]	C	T	8.172e^-4	0.929	INTERGENIC
3R	8491614	3R_8491614_SNP [dm3] 3R_12665892_SNP [dm6]	A	C	8.191e^-4	0.929	UPSTREAM CG14395 INTRON CG14395
2L	18615029	2L_18615029_SNP [dm3] 2L_18615029_SNP [dm6]	C	G	8.217e^-4	0.929	SYNONYMOUS_CODING CG15161	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna
3R	26897709	3R_26897709_SNP [dm3] 3R_31071987_SNP [dm6]	C	T	8.234e^-4	0.929	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20043360	X_20043360_SNP [dm3] X_20149327_SNP [dm6]	C	T	8.239e^-4	0.929	INTRON CG9572
3R	15467999	3R_15467999_SNP [dm3] 3R_19642277_SNP [dm6]	G	A	8.251e^-4	0.929	SYNONYMOUS_CODING subdued DOWNSTREAM Vha13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	18027296	2L_18027296_SNP [dm3] 2L_18027296_SNP [dm6]	A	G	8.253e^-4	0.929	INTRON rdo
3R	26640146	3R_26640146_SNP [dm3] 3R_30814424_SNP [dm6]	G	A	8.280e^-4	0.929	INTRON cindr	TF binding site BDTNP1_TFBS_twi
3R	21835523	3R_21835523_SNP [dm3] 3R_26009801_SNP [dm6]	A	G	8.296e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3L	8703246	3L_8703246_SNP [dm3] 3L_8710146_SNP [dm6]	T	A	8.327e^-4	0.929	INTERGENIC	regulatory region REDfly_CRMs
X	2307512	X_2307512_SNP [dm3] X_2413479_SNP [dm6]	T	C	8.335e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	2979164	2L_2979164_SNP [dm3] 2L_2979164_SNP [dm6]	T	C	8.344e^-4	0.929	SYNONYMOUS_CODING CG9643 DOWNSTREAM CG3165 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17863796	3R_17863796_SNP [dm3] 3R_22038074_SNP [dm6]	T	C	8.350e^-4	0.929	SYNONYMOUS_CODING pit
2L	2979131	2L_2979131_SNP [dm3] 2L_2979131_SNP [dm6]	T	C	8.353e^-4	0.929	SYNONYMOUS_CODING CG9643 DOWNSTREAM CG3165 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9227932	3R_9227932_SNP [dm3] 3R_13402210_SNP [dm6]	T	A	8.357e^-4	0.929	UPSTREAM CG9796 DOWNSTREAM CG33977 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	3691526	3L_3691526_SNP [dm3] 3L_3691526_SNP [dm6]	G	A	8.377e^-4	0.929	INTERGENIC
3R	20587472	3R_20587472_SNP [dm3] 3R_24761750_SNP [dm6]	G	A	8.381e^-4	0.929	SYNONYMOUS_CODING AstA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3897940	3L_3897940_SNP [dm3] 3L_3897940_SNP [dm6]	G	C	8.382e^-4	0.929	NON_SYNONYMOUS_CODING Ccz1 SPLICE_SITE_REGION Ccz1 DOWNSTREAM CG14977	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3L	3897971	3L_3897971_SNP [dm3] 3L_3897971_SNP [dm6]	A	C	8.382e^-4	0.929	DOWNSTREAM CG14977 INTRON Ccz1	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2L	6791633	2L_6791633_SNP [dm3] 2L_6791633_SNP [dm6]	T	C	8.453e^-4	0.929	SYNONYMOUS_CODING nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	4864002	2R_4864002_SNP [dm3] 2R_8976497_SNP [dm6]	T	A	8.463e^-4	0.929	INTRON CG8213
3L	5125745	3L_5125745_INS [dm3] 3L_5132645_INS [dm6]	G	GCCAAATAG	8.483e^-4	0.929	DOWNSTREAM CG15213 & 1 other INTERGENIC
3L	10577256	3L_10577256_SNP [dm3] 3L_10584156_SNP [dm6]	A	T	8.500e^-4	0.929	INTRON A2bp1
3L	13205609	3L_13205609_SNP [dm3] 3L_13212509_SNP [dm6]	G	A	8.506e^-4	0.929	DOWNSTREAM tRNA:CR32128 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

Climbing_Index_T phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results