DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.804e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.08079

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.4487	0.0633
In_3R_P	6.4234	0.0403

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2437 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	3430815	3L_3430815_SNP [dm3] 3L_3430815_SNP [dm6]	G	A	2.011e^-8	0.038	INTRON eIF5B
3L	9198674	3L_9198674_SNP [dm3] 3L_9205574_SNP [dm6]	T	C	1.939e^-7	0.182	INTRON Slc45-1	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
3L	9198669	3L_9198669_SNP [dm3] 3L_9205569_SNP [dm6]	T	G	4.484e^-7	0.273	INTRON Slc45-1	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
X	15261343	X_15261343_SNP [dm3] X_15367310_SNP [dm6]	G	A	6.087e^-7	0.273	INTRON acj6
3R	14236115	3R_14236115_SNP [dm3] 3R_18410393_SNP [dm6]	C	T	9.756e^-7	0.273	SYNONYMOUS_CODING CG10864 UPSTREAM CG31122 INTRON CG31122	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18394279	2R_18394279_SNP [dm3] 2R_22506774_SNP [dm6]	A	T	1.119e^-6	0.273	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
3L	3430805	3L_3430805_DEL [dm3] 3L_3430805_DEL [dm6]	CTTT	C	1.144e^-6	0.273	INTRON eIF5B
2L	6380628	2L_6380628_SNP [dm3] 2L_6380628_SNP [dm6]	C	T	1.166e^-6	0.273	UPSTREAM CG9507 INTRON CG42368
2R	18394449	2R_18394449_SNP [dm3] 2R_22506944_SNP [dm6]	C	T	1.350e^-6	0.281	INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
3R	15349165	3R_15349165_SNP [dm3] 3R_19523443_SNP [dm6]	T	A	1.598e^-6	0.293	INTRON Dys
3L	2870925	3L_2870925_SNP [dm3] 3L_2870925_SNP [dm6]	C	T	1.720e^-6	0.293	SYNONYMOUS_CODING CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18394278	2R_18394278_SNP [dm3] 2R_22506773_SNP [dm6]	G	T	2.021e^-6	0.316	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
2L	3562838	2L_3562838_SNP [dm3] 2L_3562838_SNP [dm6]	T	C	2.358e^-6	0.331	DOWNSTREAM CR44747 EXON CR44309
3L	3912095	3L_3912095_SNP [dm3] 3L_3912095_SNP [dm6]	A	G	2.479e^-6	0.331	INTRON Eip63F-1
3R	9740575	3R_9740575_SNP [dm3] 3R_13914853_SNP [dm6]	A	C	2.648e^-6	0.331	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18543864	3L_18543864_SNP [dm3] 3L_18550764_SNP [dm6]	A	T	3.294e^-6	0.373	INTERGENIC
X	4706940	X_4706940_SNP [dm3] X_4812907_SNP [dm6]	C	A	3.382e^-6	0.373	INTERGENIC
3R	15349166	3R_15349166_SNP [dm3] 3R_19523444_SNP [dm6]	C	A	3.701e^-6	0.386	INTRON Dys
3R	8980298	3R_8980298_SNP [dm3] 3R_13154576_SNP [dm6]	C	A	4.447e^-6	0.421	UTR_5_PRIME 2mit INTRON timeout EXON CR45109
3L	1545444	3L_1545444_SNP [dm3] 3L_1545444_SNP [dm6]	A	G	4.491e^-6	0.421	UPSTREAM Cct1 DOWNSTREAM CG7852 INTRON CG32313	TF binding site BDTNP1_TFBS_dl
3R	25212437	3R_25212437_SNP [dm3] 3R_29386715_SNP [dm6]	C	T	4.749e^-6	0.424	INTRON Ptp99A	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
3L	10462779	3L_10462779_SNP [dm3] 3L_10469679_SNP [dm6]	G	A	5.181e^-6	0.442	DOWNSTREAM S-Lap3 INTERGENIC
3R	14460185	3R_14460185_SNP [dm3] 3R_18634463_SNP [dm6]	C	G	5.835e^-6	0.476	INTRON qin & 1 other
3L	2040738	3L_2040738_DEL [dm3] 3L_2040738_DEL [dm6]	AAGTGTGAATCTA...	A	7.400e^-6	0.517	INTRON sls
2L	7145774	2L_7145774_SNP [dm3] 2L_7145774_SNP [dm6]	C	A	7.587e^-6	0.517	DOWNSTREAM CR44612 INTRON Pvf3
2L	15274470	2L_15274470_SNP [dm3] 2L_15274470_SNP [dm6]	T	A	8.059e^-6	0.517	INTRON UK114	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8934699	3R_8934699_SNP [dm3] 3R_13108977_SNP [dm6]	T	A	8.154e^-6	0.517	INTRON timeout
3R	7596517	3R_7596517_INS [dm3] 3R_11770795_INS [dm6]	A	AA	8.543e^-6	0.517	INTRON l_3_neo38	TF binding site BDTNP1_TFBS_dl
2L	6130273	2L_6130273_SNP [dm3] 2L_6130273_SNP [dm6]	A	G	8.651e^-6	0.517	SYNONYMOUS_CODING CG42730 UTR_5_PRIME tectonic UPSTREAM CG9222	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9593563	2L_9593563_SNP [dm3] 2L_9593563_SNP [dm6]	G	A	8.689e^-6	0.517	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	22777956	3R_22777956_SNP [dm3] 3R_26952234_SNP [dm6]	A	G	8.827e^-6	0.517	INTRON CG6330	TF binding site BDTNP1_TFBS_da
3R	22777960	3R_22777960_SNP [dm3] 3R_26952238_SNP [dm6]	C	G	8.827e^-6	0.517	INTRON CG6330	TF binding site BDTNP1_TFBS_da
2L	22048481	2L_22048481_SNP [dm3] 2L_22048481_SNP [dm6]	T	A	9.618e^-6	0.547	INTERGENIC	transposable element FlyBase
3L	2870967	3L_2870967_DEL [dm3] 3L_2870967_DEL [dm6]	GGGG	G	1.028e^-5	0.567	CODON_DELETION CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6430858	X_6430858_SNP [dm3] X_6536825_SNP [dm6]	C	T	1.074e^-5	0.575	INTRON dx	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	14451418	3R_14451418_SNP [dm3] 3R_18625696_SNP [dm6]	C	G	1.147e^-5	0.597	INTRON qin
2L	987481	2L_987481_SNP [dm3] 2L_987481_SNP [dm6]	C	A	1.186e^-5	0.6	DOWNSTREAM CR44801 INTERGENIC
2L	3551952	2L_3551952_SNP [dm3] 2L_3551952_SNP [dm6]	A	T	1.293e^-5	0.6	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3511862	3L_3511862_SNP [dm3] 3L_3511862_SNP [dm6]	T	A	1.349e^-5	0.6	SYNONYMOUS_CODING ImpE2 DOWNSTREAM CG42324	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_cad mE1_TFBS_HSA
3L	15700792	3L_15700792_SNP [dm3] 3L_15707692_SNP [dm6]	C	A	1.384e^-5	0.6	INTERGENIC
2L	6380568	2L_6380568_SNP [dm3] 2L_6380568_SNP [dm6]	A	G	1.387e^-5	0.6	UPSTREAM CG9507 INTRON CG42368
3L	18543905	3L_18543905_SNP [dm3] 3L_18550805_SNP [dm6]	C	T	1.439e^-5	0.6	INTERGENIC
2L	6380597	2L_6380597_SNP [dm3] 2L_6380597_SNP [dm6]	A	G	1.453e^-5	0.6	UPSTREAM CG9507 INTRON CG42368
3L	2040697	3L_2040697_SNP [dm3] 3L_2040697_SNP [dm6]	A	G	1.460e^-5	0.6	INTRON sls
2R	7843736	2R_7843736_SNP [dm3] 2R_11956231_SNP [dm6]	A	G	1.476e^-5	0.6	INTRON CG13188
3R	26189687	3R_26189687_INS [dm3] 3R_30363965_INS [dm6]	G	GTG	1.487e^-5	0.6	UTR_3_PRIME hdc
3R	9260572	3R_9260572_SNP [dm3] 3R_13434850_SNP [dm6]	G	A	1.504e^-5	0.6	START_GAINED yrt UTR_5_PRIME yrt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	12864523	3L_12864523_SNP [dm3] 3L_12871423_SNP [dm6]	C	T	1.569e^-5	0.613	INTERGENIC
X	6430888	X_6430888_SNP [dm3] X_6536855_SNP [dm6]	T	C	1.721e^-5	0.659	INTRON dx	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	17992878	3L_17992878_INS [dm3] 3L_17999778_INS [dm6]	T	TA	1.776e^-5	0.666	UTR_5_PRIME Eip75B INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3R	8044383	3R_8044383_SNP [dm3] 3R_12218661_SNP [dm6]	A	C	1.832e^-5	0.674	NON_SYNONYMOUS_CODING CG4848 SPLICE_SITE_REGION CG4848	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21657851	3R_21657851_SNP [dm3] 3R_25832129_SNP [dm6]	C	T	2.003e^-5	0.718	UPSTREAM alpha4GT2 & 1 other INTERGENIC
3L	5655160	3L_5655160_SNP [dm3] 3L_5662060_SNP [dm6]	C	T	2.173e^-5	0.718	INTRON sif & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14460275	3R_14460275_SNP [dm3] 3R_18634553_SNP [dm6]	T	A	2.178e^-5	0.718	INTRON qin & 1 other
3R	9443875	3R_9443875_SNP [dm3] 3R_13618153_SNP [dm6]	T	A	2.187e^-5	0.718	EXON CR45680
3L	15864893	3L_15864893_SNP [dm3] 3L_15871793_SNP [dm6]	T	G	2.205e^-5	0.718	INTRON pHCl
3R	26189710	3R_26189710_SNP [dm3] 3R_30363988_SNP [dm6]	C	T	2.253e^-5	0.718	UTR_3_PRIME hdc
3L	15628408	3L_15628408_SNP [dm3] 3L_15635308_SNP [dm6]	T	A	2.352e^-5	0.718	UPSTREAM comm3 INTRON comm3
3R	9443770	3R_9443770_SNP [dm3] 3R_13618048_SNP [dm6]	T	A	2.403e^-5	0.718	EXON CR45680
3R	14460276	3R_14460276_SNP [dm3] 3R_18634554_SNP [dm6]	C	A	2.412e^-5	0.718	INTRON qin & 1 other
X	15261252	X_15261252_SNP [dm3] X_15367219_SNP [dm6]	C	T	2.421e^-5	0.718	INTRON acj6
2L	9594278	2L_9594278_SNP [dm3] 2L_9594278_SNP [dm6]	T	C	2.485e^-5	0.718	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4544731	3R_4544731_SNP [dm3] 3R_8719009_SNP [dm6]	G	A	2.485e^-5	0.718	UPSTREAM CG11760 & 1 other INTRON CG8116
3R	8935138	3R_8935138_SNP [dm3] 3R_13109416_SNP [dm6]	C	T	2.517e^-5	0.718	INTRON timeout
2L	6380594	2L_6380594_DEL [dm3] 2L_6380594_DEL [dm6]	GA	G	2.552e^-5	0.718	UPSTREAM CG9507 INTRON CG42368
2L	14014336	2L_14014336_SNP [dm3] 2L_14014336_SNP [dm6]	C	A	2.641e^-5	0.718	INTRON bgm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	8926369	3R_8926369_SNP [dm3] 3R_13100647_SNP [dm6]	C	G	2.686e^-5	0.718	INTRON timeout
X	7895908	X_7895908_SNP [dm3] X_8001875_SNP [dm6]	G	C	2.710e^-5	0.718	INTRON Tbh
3R	16378811	3R_16378811_SNP [dm3] 3R_20553089_SNP [dm6]	A	C	2.740e^-5	0.718	UPSTREAM Stat92E INTRON att-ORFA & 1 other	TF binding site mE1_TFBS_cad
2L	9136398	2L_9136398_SNP [dm3] 2L_9136398_SNP [dm6]	C	G	2.744e^-5	0.718	INTRON CG32982
3L	9634827	3L_9634827_SNP [dm3] 3L_9641727_SNP [dm6]	C	T	2.755e^-5	0.718	SYNONYMOUS_CODING CG18180 INTRON fry	TF binding site mE1_TFBS_cad
X	14381999	X_14381999_INS [dm3] X_14487966_INS [dm6]	C	GCA	2.828e^-5	0.718	INTERGENIC
3L	15751484	3L_15751484_SNP [dm3] 3L_15758384_SNP [dm6]	T	A	2.861e^-5	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	5806766	3R_5806766_SNP [dm3] 3R_9981044_SNP [dm6]	T	A	2.938e^-5	0.718	INTRON Glut4EF
2L	5961822	2L_5961822_SNP [dm3] 2L_5961822_SNP [dm6]	A	G	2.994e^-5	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10039855	2L_10039855_SNP [dm3] 2L_10039855_SNP [dm6]	T	C	3.006e^-5	0.718	DOWNSTREAM obst-B INTERGENIC
3R	17384407	3R_17384407_SNP [dm3] 3R_21558685_SNP [dm6]	C	A	3.035e^-5	0.718	INTERGENIC	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3R	16498262	3R_16498262_SNP [dm3] 3R_20672540_SNP [dm6]	C	T	3.076e^-5	0.718	UTR_3_PRIME Cpr92F
X	11274003	X_11274003_SNP [dm3] X_11379970_SNP [dm6]	G	A	3.077e^-5	0.718	INTRON dlg1
3R	17906774	3R_17906774_SNP [dm3] 3R_22081052_SNP [dm6]	T	C	3.223e^-5	0.718	INTRON CG13408	TF binding site mE1_TFBS_kn
2R	1674348	2R_1674348_SNP [dm3] 2R_5786843_SNP [dm6]	T	A	3.288e^-5	0.718	INTERGENIC
3L	19421720	3L_19421720_SNP [dm3] 3L_19428620_SNP [dm6]	T	A	3.338e^-5	0.718	INTERGENIC
2R	9344914	2R_9344914_SNP [dm3] 2R_13457409_SNP [dm6]	T	C	3.365e^-5	0.718	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10813788	3L_10813788_SNP [dm3] 3L_10820688_SNP [dm6]	C	T	3.387e^-5	0.718	INTERGENIC
3R	23452271	3R_23452271_SNP [dm3] 3R_27626549_SNP [dm6]	T	A	3.421e^-5	0.718	UPSTREAM CG5612 INTRON Tusp
3L	2040786	3L_2040786_SNP [dm3] 3L_2040786_SNP [dm6]	T	A	3.432e^-5	0.718	SYNONYMOUS_CODING sls
3R	5806591	3R_5806591_SNP [dm3] 3R_9980869_SNP [dm6]	C	T	3.473e^-5	0.718	INTRON Glut4EF
2L	14043327	2L_14043327_SNP [dm3] 2L_14043327_SNP [dm6]	T	C	3.496e^-5	0.718	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_dl
X	15261358	X_15261358_SNP [dm3] X_15367325_SNP [dm6]	C	A	3.545e^-5	0.718	INTRON acj6
3R	8929806	3R_8929806_SNP [dm3] 3R_13104084_SNP [dm6]	T	C	3.568e^-5	0.718	INTRON timeout
3R	8917153	3R_8917153_SNP [dm3] 3R_13091431_SNP [dm6]	C	T	3.582e^-5	0.718	INTRON timeout
3R	16308886	3R_16308886_SNP [dm3] 3R_20483164_SNP [dm6]	G	A	3.592e^-5	0.718	INTRON Gfrl
3R	19926658	3R_19926658_SNP [dm3] 3R_24100936_SNP [dm6]	C	A	3.678e^-5	0.718	DOWNSTREAM Syx1A INTRON 4EHP
3R	10370747	3R_10370747_SNP [dm3] 3R_14545025_SNP [dm6]	C	A	3.689e^-5	0.718	INTRON Pde6
X	17525365	X_17525365_SNP [dm3] X_17631332_SNP [dm6]	C	T	3.791e^-5	0.718	SYNONYMOUS_CODING CG8316 UPSTREAM CG5703
3R	18264198	3R_18264198_SNP [dm3] 3R_22438476_SNP [dm6]	A	G	3.820e^-5	0.718	INTERGENIC
3R	8976991	3R_8976991_SNP [dm3] 3R_13151269_SNP [dm6]	A	G	3.975e^-5	0.718	INTRON timeout & 2 others
3L	1029563	3L_1029563_SNP [dm3] 3L_1029563_SNP [dm6]	G	A	3.984e^-5	0.718	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad
3R	8926402	3R_8926402_SNP [dm3] 3R_13100680_SNP [dm6]	G	A	4.053e^-5	0.718	INTRON timeout
X	17179004	X_17179004_SNP [dm3] X_17284971_SNP [dm6]	C	G	4.057e^-5	0.718	UPSTREAM CG8661 DOWNSTREAM Fim INTRON CG5445	insulator Insulator_Class_II.mE01

Showing 1 to 100 of 1,000 entries

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GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.447e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.06614
In_3R_P	0.05911

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.4247	0.0642
In_3R_P	7.3934	0.0248

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2048 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	2001397	3L_2001397_DEL [dm3] 3L_2001397_DEL [dm6]	AA	A	3.664e^-7	0.482	INTERGENIC
3R	7596517	3R_7596517_INS [dm3] 3R_11770795_INS [dm6]	A	AA	6.633e^-7	0.482	INTRON l_3_neo38	TF binding site BDTNP1_TFBS_dl
X	18439213	X_18439213_SNP [dm3] X_18545180_SNP [dm6]	A	G	7.702e^-7	0.482	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15261343	X_15261343_SNP [dm3] X_15367310_SNP [dm6]	G	A	1.123e^-6	0.527	INTRON acj6
3L	4713390	3L_4713390_SNP [dm3] 3L_4713390_SNP [dm6]	T	A	3.933e^-6	0.753	INTRON RhoGEF64C
3R	21999314	3R_21999314_SNP [dm3] 3R_26173592_SNP [dm6]	C	T	4.350e^-6	0.753	INTRON CG31323
3R	26259382	3R_26259382_SNP [dm3] 3R_30433660_SNP [dm6]	T	A	4.745e^-6	0.753	INTRON CG15534
3R	14460185	3R_14460185_SNP [dm3] 3R_18634463_SNP [dm6]	C	G	5.052e^-6	0.753	INTRON qin & 1 other
3R	21657851	3R_21657851_SNP [dm3] 3R_25832129_SNP [dm6]	C	T	5.230e^-6	0.753	UPSTREAM alpha4GT2 & 1 other INTERGENIC
X	10025818	X_10025818_SNP [dm3] X_10131785_SNP [dm6]	G	A	5.591e^-6	0.753	INTRON CR44894 & 1 other
3L	2040697	3L_2040697_SNP [dm3] 3L_2040697_SNP [dm6]	A	G	6.067e^-6	0.753	INTRON sls
3L	10209516	3L_10209516_SNP [dm3] 3L_10216416_SNP [dm6]	A	G	6.103e^-6	0.753	SYNONYMOUS_CODING CG8065
3R	8940509	3R_8940509_SNP [dm3] 3R_13114787_SNP [dm6]	T	C	6.592e^-6	0.753	INTRON timeout
2R	16382690	2R_16382690_SNP [dm3] 2R_20495185_SNP [dm6]	A	G	7.001e^-6	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	7843258	2R_7843258_SNP [dm3] 2R_11955753_SNP [dm6]	T	G	7.133e^-6	0.753	INTRON CG13188
3R	22786915	3R_22786915_SNP [dm3] 3R_26961193_SNP [dm6]	T	C	7.714e^-6	0.753	UTR_3_PRIME Tsp97E DOWNSTREAM Tsp97E
3R	23629115	3R_23629115_SNP [dm3] 3R_27803393_SNP [dm6]	C	G	7.714e^-6	0.753	INTRON CG34353
3L	10209504	3L_10209504_SNP [dm3] 3L_10216404_SNP [dm6]	C	T	9.243e^-6	0.753	SYNONYMOUS_CODING CG8065
3R	8940399	3R_8940399_SNP [dm3] 3R_13114677_SNP [dm6]	T	C	9.355e^-6	0.753	INTRON timeout
3L	4721738	3L_4721738_SNP [dm3] 3L_4721738_SNP [dm6]	C	A	9.905e^-6	0.753	INTRON RhoGEF64C
3R	1581957	3R_1581957_SNP [dm3] 3R_5756235_SNP [dm6]	T	G	1.000e^-5	0.753	NON_SYNONYMOUS_CODING Sec8
X	9629439	X_9629439_SNP [dm3] X_9735406_SNP [dm6]	C	T	1.031e^-5	0.753	INTRON Sp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
2L	7051560	2L_7051560_SNP [dm3] 2L_7051560_SNP [dm6]	T	C	1.099e^-5	0.753	SYNONYMOUS_CODING milt	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	3430842	3L_3430842_SNP [dm3] 3L_3430842_SNP [dm6]	A	G	1.133e^-5	0.753	INTRON eIF5B
2L	14101093	2L_14101093_SNP [dm3] 2L_14101093_SNP [dm6]	G	C	1.135e^-5	0.753	INTERGENIC
3R	1583916	3R_1583916_SNP [dm3] 3R_5758194_SNP [dm6]	A	G	1.146e^-5	0.753	NON_SYNONYMOUS_CODING Sec8 DOWNSTREAM CG2082	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1003968	3L_1003968_SNP [dm3] 3L_1003968_SNP [dm6]	G	T	1.291e^-5	0.753	INTRON trio	TF binding site mE1_TFBS_chinmo
3L	2001853	3L_2001853_SNP [dm3] 3L_2001853_SNP [dm6]	C	T	1.293e^-5	0.753	INTERGENIC
3R	26259333	3R_26259333_SNP [dm3] 3R_30433611_SNP [dm6]	C	T	1.301e^-5	0.753	INTRON CG15534
3R	8939969	3R_8939969_SNP [dm3] 3R_13114247_SNP [dm6]	A	G	1.309e^-5	0.753	SPLICE_SITE_REGION timeout INTRON timeout
2R	13088095	2R_13088095_SNP [dm3] 2R_17200590_SNP [dm6]	C	T	1.360e^-5	0.753	INTERGENIC
2L	19003351	2L_19003351_DEL [dm3] 2L_19003351_DEL [dm6]	GGGCATTCG	G	1.389e^-5	0.753	UPSTREAM CG31793 DOWNSTREAM CG31792 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7032497	3R_7032497_SNP [dm3] 3R_11206775_SNP [dm6]	T	A	1.422e^-5	0.753	INTRON cu
3R	5196345	3R_5196345_SNP [dm3] 3R_9370623_SNP [dm6]	T	C	1.447e^-5	0.753	INTRON FER
3R	20862978	3R_20862978_SNP [dm3] 3R_25037256_SNP [dm6]	C	A	1.493e^-5	0.753	SYNONYMOUS_CODING CG31115 INTRON CG6422
2R	7022312	2R_7022312_SNP [dm3] 2R_11134807_SNP [dm6]	T	C	1.569e^-5	0.753	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	7022322	2R_7022322_SNP [dm3] 2R_11134817_SNP [dm6]	T	G	1.584e^-5	0.753	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	18037554	3R_18037554_SNP [dm3] 3R_22211832_SNP [dm6]	C	A	1.586e^-5	0.753	UTR_5_PRIME Gld2 UPSTREAM Gld2 INTRON SKIP
3R	7033012	3R_7033012_SNP [dm3] 3R_11207290_SNP [dm6]	G	A	1.652e^-5	0.753	INTRON cu
2L	4230462	2L_4230462_SNP [dm3] 2L_4230462_SNP [dm6]	T	G	1.683e^-5	0.753	INTERGENIC
3L	2001508	3L_2001508_SNP [dm3] 3L_2001508_SNP [dm6]	T	C	1.684e^-5	0.753	INTERGENIC
2R	16382688	2R_16382688_SNP [dm3] 2R_20495183_SNP [dm6]	C	A	1.745e^-5	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	5196323	3R_5196323_SNP [dm3] 3R_9370601_SNP [dm6]	T	G	1.910e^-5	0.753	INTRON FER
3R	21657882	3R_21657882_SNP [dm3] 3R_25832160_SNP [dm6]	C	A	1.927e^-5	0.753	UPSTREAM alpha4GT2 & 1 other INTERGENIC
3R	18385273	3R_18385273_SNP [dm3] 3R_22559551_SNP [dm6]	A	C	2.013e^-5	0.753	INTRON CG5278
3L	11341755	3L_11341755_DEL [dm3] 3L_11348655_DEL [dm6]	GGTTTGT	G	2.020e^-5	0.753	DOWNSTREAM CR45251 INTERGENIC
2L	4364375	2L_4364375_SNP [dm3] 2L_4364375_SNP [dm6]	T	C	2.081e^-5	0.753	UPSTREAM CR45363 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6380628	2L_6380628_SNP [dm3] 2L_6380628_SNP [dm6]	C	T	2.090e^-5	0.753	UPSTREAM CG9507 INTRON CG42368
3R	1586675	3R_1586675_SNP [dm3] 3R_5760953_SNP [dm6]	C	T	2.110e^-5	0.753	SYNONYMOUS_CODING CG2082 DOWNSTREAM CG2082
3R	5196331	3R_5196331_SNP [dm3] 3R_9370609_SNP [dm6]	A	T	2.110e^-5	0.753	INTRON FER
3R	8951235	3R_8951235_SNP [dm3] 3R_13125513_SNP [dm6]	C	T	2.118e^-5	0.753	UTR_3_PRIME 2mit DOWNSTREAM 2mit INTRON timeout
3R	8967667	3R_8967667_SNP [dm3] 3R_13141945_SNP [dm6]	A	G	2.122e^-5	0.753	INTRON timeout & 2 others
3L	2001566	3L_2001566_SNP [dm3] 3L_2001566_SNP [dm6]	T	C	2.191e^-5	0.753	INTERGENIC
3R	6349140	3R_6349140_SNP [dm3] 3R_10523418_SNP [dm6]	C	A	2.225e^-5	0.753	INTRON hth
X	5921347	X_5921347_SNP [dm3] X_6027314_SNP [dm6]	C	G	2.245e^-5	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	7033253	3R_7033253_SNP [dm3] 3R_11207531_SNP [dm6]	T	C	2.362e^-5	0.753	INTRON cu
3R	18075673	3R_18075673_SNP [dm3] 3R_22249951_SNP [dm6]	T	C	2.364e^-5	0.753	INTRON SKIP
2L	6156253	2L_6156253_SNP [dm3] 2L_6156253_SNP [dm6]	G	T	2.385e^-5	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14058013	3L_14058013_SNP [dm3] 3L_14064913_SNP [dm6]	C	T	2.518e^-5	0.753	INTRON CG32138
3R	7035761	3R_7035761_SNP [dm3] 3R_11210039_SNP [dm6]	T	G	2.526e^-5	0.753	UPSTREAM Tctp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	4194315	2L_4194315_SNP [dm3] 2L_4194315_SNP [dm6]	C	A	2.537e^-5	0.753	INTRON CG3714
3R	7032485	3R_7032485_SNP [dm3] 3R_11206763_SNP [dm6]	T	C	2.569e^-5	0.753	INTRON cu
3R	7032889	3R_7032889_SNP [dm3] 3R_11207167_SNP [dm6]	G	C	2.587e^-5	0.753	INTRON cu
3R	1559173	3R_1559173_SNP [dm3] 3R_5733451_SNP [dm6]	C	T	2.603e^-5	0.753	UPSTREAM CG1239 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	24034256	3R_24034256_SNP [dm3] 3R_28208534_SNP [dm6]	T	C	2.619e^-5	0.753	INTRON CG34354	TF binding site mE1_TFBS_chinmo
2L	6380594	2L_6380594_DEL [dm3] 2L_6380594_DEL [dm6]	GA	G	2.726e^-5	0.753	UPSTREAM CG9507 INTRON CG42368
2L	8653407	2L_8653407_SNP [dm3] 2L_8653407_SNP [dm6]	A	G	2.749e^-5	0.753	INTRON Sema-1a
2L	12641004	2L_12641004_SNP [dm3] 2L_12641004_SNP [dm6]	T	C	2.839e^-5	0.753	START_GAINED Ref2 UTR_5_PRIME Ref2
3R	14803971	3R_14803971_SNP [dm3] 3R_18978249_SNP [dm6]	C	T	2.891e^-5	0.753	DOWNSTREAM CG12269 & 2 others INTERGENIC
3R	21657604	3R_21657604_SNP [dm3] 3R_25831882_SNP [dm6]	C	T	2.907e^-5	0.753	UTR_5_PRIME Mst57Da UPSTREAM Mst57Db & 1 other
X	8327851	X_8327851_SNP [dm3] X_8433818_SNP [dm6]	A	T	2.908e^-5	0.753	UPSTREAM CG32712 DOWNSTREAM CG12125 & 1 other INTERGENIC
3R	18395420	3R_18395420_SNP [dm3] 3R_22569698_SNP [dm6]	G	T	3.010e^-5	0.753	UPSTREAM CG33110 INTERGENIC
3R	22786876	3R_22786876_SNP [dm3] 3R_26961154_SNP [dm6]	A	T	3.065e^-5	0.753	UTR_3_PRIME Tsp97E DOWNSTREAM Tsp97E
3R	7023602	3R_7023602_SNP [dm3] 3R_11197880_SNP [dm6]	T	C	3.100e^-5	0.753	DOWNSTREAM CG18577 INTRON cu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10370747	3R_10370747_SNP [dm3] 3R_14545025_SNP [dm6]	C	A	3.106e^-5	0.753	INTRON Pde6
2L	8657667	2L_8657667_SNP [dm3] 2L_8657667_SNP [dm6]	G	A	3.138e^-5	0.753	INTRON Sema-1a
2L	17087502	2L_17087502_SNP [dm3] 2L_17087502_SNP [dm6]	A	C	3.150e^-5	0.753	UPSTREAM CG12620 INTERGENIC
3R	1571778	3R_1571778_SNP [dm3] 3R_5746056_SNP [dm6]	A	C	3.166e^-5	0.753	UTR_3_PRIME Madm
3R	26259507	3R_26259507_INS [dm3] 3R_30433785_INS [dm6]	G	GG	3.252e^-5	0.753	INTRON CG15534
3R	26259404	3R_26259404_SNP [dm3] 3R_30433682_SNP [dm6]	A	C	3.270e^-5	0.753	INTRON CG15534
2L	12720188	2L_12720188_SNP [dm3] 2L_12720188_SNP [dm6]	C	A	3.309e^-5	0.753	INTRON CG5792 & 1 other	TF binding site mE1_TFBS_sens
X	9629504	X_9629504_SNP [dm3] X_9735471_SNP [dm6]	G	C	3.313e^-5	0.753	INTRON Sp1
3R	7032434	3R_7032434_SNP [dm3] 3R_11206712_SNP [dm6]	G	A	3.332e^-5	0.753	INTRON cu
2R	16382712	2R_16382712_INS [dm3] 2R_20495207_INS [dm6]	A	ACATA	3.427e^-5	0.765	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	1570539	3R_1570539_SNP [dm3] 3R_5744817_SNP [dm6]	A	C	3.477e^-5	0.767	INTRON Madm	TF binding site mE1_TFBS_inv
3R	8952419	3R_8952419_SNP [dm3] 3R_13126697_SNP [dm6]	G	A	3.570e^-5	0.779	NON_SYNONYMOUS_CODING 2mit INTRON timeout	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9198669	3L_9198669_SNP [dm3] 3L_9205569_SNP [dm6]	T	G	3.636e^-5	0.78	INTRON Slc45-1	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
3R	1570012	3R_1570012_SNP [dm3] 3R_5744290_SNP [dm6]	G	T	3.657e^-5	0.78	INTRON Madm
3R	7040338	3R_7040338_SNP [dm3] 3R_11214616_SNP [dm6]	T	C	3.787e^-5	0.791	UPSTREAM ZnT86D DOWNSTREAM RpS25 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
X	5921367	X_5921367_SNP [dm3] X_6027334_SNP [dm6]	T	G	3.824e^-5	0.791	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	1570003	3R_1570003_DEL [dm3] 3R_5744281_DEL [dm6]	TTGAAAT	T	3.869e^-5	0.791	INTRON Madm
3R	18395402	3R_18395402_SNP [dm3] 3R_22569680_SNP [dm6]	A	T	3.967e^-5	0.791	UPSTREAM CG33110 INTERGENIC
3R	25074433	3R_25074433_DEL [dm3] 3R_29248711_DEL [dm6]	CTGA	C	3.968e^-5	0.791	UTR_5_PRIME SP1029 INTRON SP1029
3R	7033438	3R_7033438_SNP [dm3] 3R_11207716_SNP [dm6]	C	T	4.114e^-5	0.791	SYNONYMOUS_CODING cu
3R	8940505	3R_8940505_SNP [dm3] 3R_13114783_SNP [dm6]	A	G	4.116e^-5	0.791	INTRON timeout
3R	14236115	3R_14236115_SNP [dm3] 3R_18410393_SNP [dm6]	C	T	4.178e^-5	0.791	SYNONYMOUS_CODING CG10864 UPSTREAM CG31122 INTRON CG31122	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17237991	2R_17237991_SNP [dm3] 2R_21350486_SNP [dm6]	A	G	4.202e^-5	0.791	UTR_5_PRIME CG17974
3R	8946646	3R_8946646_SNP [dm3] 3R_13120924_SNP [dm6]	T	C	4.268e^-5	0.791	INTRON timeout
3L	22005868	3L_22005868_SNP [dm3] 3L_22012768_SNP [dm6]	T	C	4.411e^-5	0.791	INTERGENIC
2L	6130273	2L_6130273_SNP [dm3] 2L_6130273_SNP [dm6]	A	G	4.440e^-5	0.791	SYNONYMOUS_CODING CG42730 UTR_5_PRIME tectonic UPSTREAM CG9222	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo

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Missing results

By genomic position
Variant impact
Gene name

mn_Tot_Activity_Lead phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results