DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.804e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.08079

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.4487	0.0633
In_3R_P	6.4234	0.0403

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2437 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	3430815	3L_3430815_SNP [dm3] 3L_3430815_SNP [dm6]	G	A	2.011e^-8	0.038	INTRON eIF5B
3L	9198674	3L_9198674_SNP [dm3] 3L_9205574_SNP [dm6]	T	C	1.939e^-7	0.182	INTRON Slc45-1	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
3L	9198669	3L_9198669_SNP [dm3] 3L_9205569_SNP [dm6]	T	G	4.484e^-7	0.273	INTRON Slc45-1	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
X	15261343	X_15261343_SNP [dm3] X_15367310_SNP [dm6]	G	A	6.087e^-7	0.273	INTRON acj6
3R	14236115	3R_14236115_SNP [dm3] 3R_18410393_SNP [dm6]	C	T	9.756e^-7	0.273	SYNONYMOUS_CODING CG10864 UPSTREAM CG31122 INTRON CG31122	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18394279	2R_18394279_SNP [dm3] 2R_22506774_SNP [dm6]	A	T	1.119e^-6	0.273	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
3L	3430805	3L_3430805_DEL [dm3] 3L_3430805_DEL [dm6]	CTTT	C	1.144e^-6	0.273	INTRON eIF5B
2L	6380628	2L_6380628_SNP [dm3] 2L_6380628_SNP [dm6]	C	T	1.166e^-6	0.273	UPSTREAM CG9507 INTRON CG42368
2R	18394449	2R_18394449_SNP [dm3] 2R_22506944_SNP [dm6]	C	T	1.350e^-6	0.281	INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
3R	15349165	3R_15349165_SNP [dm3] 3R_19523443_SNP [dm6]	T	A	1.598e^-6	0.293	INTRON Dys
3L	2870925	3L_2870925_SNP [dm3] 3L_2870925_SNP [dm6]	C	T	1.720e^-6	0.293	SYNONYMOUS_CODING CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18394278	2R_18394278_SNP [dm3] 2R_22506773_SNP [dm6]	G	T	2.021e^-6	0.316	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
2L	3562838	2L_3562838_SNP [dm3] 2L_3562838_SNP [dm6]	T	C	2.358e^-6	0.331	DOWNSTREAM CR44747 EXON CR44309
3L	3912095	3L_3912095_SNP [dm3] 3L_3912095_SNP [dm6]	A	G	2.479e^-6	0.331	INTRON Eip63F-1
3R	9740575	3R_9740575_SNP [dm3] 3R_13914853_SNP [dm6]	A	C	2.648e^-6	0.331	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18543864	3L_18543864_SNP [dm3] 3L_18550764_SNP [dm6]	A	T	3.294e^-6	0.373	INTERGENIC
X	4706940	X_4706940_SNP [dm3] X_4812907_SNP [dm6]	C	A	3.382e^-6	0.373	INTERGENIC
3R	15349166	3R_15349166_SNP [dm3] 3R_19523444_SNP [dm6]	C	A	3.701e^-6	0.386	INTRON Dys
3R	8980298	3R_8980298_SNP [dm3] 3R_13154576_SNP [dm6]	C	A	4.447e^-6	0.421	UTR_5_PRIME 2mit INTRON timeout EXON CR45109
3L	1545444	3L_1545444_SNP [dm3] 3L_1545444_SNP [dm6]	A	G	4.491e^-6	0.421	UPSTREAM Cct1 DOWNSTREAM CG7852 INTRON CG32313	TF binding site BDTNP1_TFBS_dl
3R	25212437	3R_25212437_SNP [dm3] 3R_29386715_SNP [dm6]	C	T	4.749e^-6	0.424	INTRON Ptp99A	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
3L	10462779	3L_10462779_SNP [dm3] 3L_10469679_SNP [dm6]	G	A	5.181e^-6	0.442	DOWNSTREAM S-Lap3 INTERGENIC
3R	14460185	3R_14460185_SNP [dm3] 3R_18634463_SNP [dm6]	C	G	5.835e^-6	0.476	INTRON qin & 1 other
3L	2040738	3L_2040738_DEL [dm3] 3L_2040738_DEL [dm6]	AAGTGTGAATCTA...	A	7.400e^-6	0.517	INTRON sls
2L	7145774	2L_7145774_SNP [dm3] 2L_7145774_SNP [dm6]	C	A	7.587e^-6	0.517	DOWNSTREAM CR44612 INTRON Pvf3
2L	15274470	2L_15274470_SNP [dm3] 2L_15274470_SNP [dm6]	T	A	8.059e^-6	0.517	INTRON UK114	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8934699	3R_8934699_SNP [dm3] 3R_13108977_SNP [dm6]	T	A	8.154e^-6	0.517	INTRON timeout
3R	7596517	3R_7596517_INS [dm3] 3R_11770795_INS [dm6]	A	AA	8.543e^-6	0.517	INTRON l_3_neo38	TF binding site BDTNP1_TFBS_dl
2L	6130273	2L_6130273_SNP [dm3] 2L_6130273_SNP [dm6]	A	G	8.651e^-6	0.517	SYNONYMOUS_CODING CG42730 UTR_5_PRIME tectonic UPSTREAM CG9222	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9593563	2L_9593563_SNP [dm3] 2L_9593563_SNP [dm6]	G	A	8.689e^-6	0.517	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	22777956	3R_22777956_SNP [dm3] 3R_26952234_SNP [dm6]	A	G	8.827e^-6	0.517	INTRON CG6330	TF binding site BDTNP1_TFBS_da
3R	22777960	3R_22777960_SNP [dm3] 3R_26952238_SNP [dm6]	C	G	8.827e^-6	0.517	INTRON CG6330	TF binding site BDTNP1_TFBS_da
2L	22048481	2L_22048481_SNP [dm3] 2L_22048481_SNP [dm6]	T	A	9.618e^-6	0.547	INTERGENIC	transposable element FlyBase
3L	2870967	3L_2870967_DEL [dm3] 3L_2870967_DEL [dm6]	GGGG	G	1.028e^-5	0.567	CODON_DELETION CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6430858	X_6430858_SNP [dm3] X_6536825_SNP [dm6]	C	T	1.074e^-5	0.575	INTRON dx	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	14451418	3R_14451418_SNP [dm3] 3R_18625696_SNP [dm6]	C	G	1.147e^-5	0.597	INTRON qin
2L	987481	2L_987481_SNP [dm3] 2L_987481_SNP [dm6]	C	A	1.186e^-5	0.6	DOWNSTREAM CR44801 INTERGENIC
2L	3551952	2L_3551952_SNP [dm3] 2L_3551952_SNP [dm6]	A	T	1.293e^-5	0.6	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3511862	3L_3511862_SNP [dm3] 3L_3511862_SNP [dm6]	T	A	1.349e^-5	0.6	SYNONYMOUS_CODING ImpE2 DOWNSTREAM CG42324	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_cad mE1_TFBS_HSA
3L	15700792	3L_15700792_SNP [dm3] 3L_15707692_SNP [dm6]	C	A	1.384e^-5	0.6	INTERGENIC
2L	6380568	2L_6380568_SNP [dm3] 2L_6380568_SNP [dm6]	A	G	1.387e^-5	0.6	UPSTREAM CG9507 INTRON CG42368
3L	18543905	3L_18543905_SNP [dm3] 3L_18550805_SNP [dm6]	C	T	1.439e^-5	0.6	INTERGENIC
2L	6380597	2L_6380597_SNP [dm3] 2L_6380597_SNP [dm6]	A	G	1.453e^-5	0.6	UPSTREAM CG9507 INTRON CG42368
3L	2040697	3L_2040697_SNP [dm3] 3L_2040697_SNP [dm6]	A	G	1.460e^-5	0.6	INTRON sls
2R	7843736	2R_7843736_SNP [dm3] 2R_11956231_SNP [dm6]	A	G	1.476e^-5	0.6	INTRON CG13188
3R	26189687	3R_26189687_INS [dm3] 3R_30363965_INS [dm6]	G	GTG	1.487e^-5	0.6	UTR_3_PRIME hdc
3R	9260572	3R_9260572_SNP [dm3] 3R_13434850_SNP [dm6]	G	A	1.504e^-5	0.6	START_GAINED yrt UTR_5_PRIME yrt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	12864523	3L_12864523_SNP [dm3] 3L_12871423_SNP [dm6]	C	T	1.569e^-5	0.613	INTERGENIC
X	6430888	X_6430888_SNP [dm3] X_6536855_SNP [dm6]	T	C	1.721e^-5	0.659	INTRON dx	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	17992878	3L_17992878_INS [dm3] 3L_17999778_INS [dm6]	T	TA	1.776e^-5	0.666	UTR_5_PRIME Eip75B INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3R	8044383	3R_8044383_SNP [dm3] 3R_12218661_SNP [dm6]	A	C	1.832e^-5	0.674	NON_SYNONYMOUS_CODING CG4848 SPLICE_SITE_REGION CG4848	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21657851	3R_21657851_SNP [dm3] 3R_25832129_SNP [dm6]	C	T	2.003e^-5	0.718	UPSTREAM alpha4GT2 & 1 other INTERGENIC
3L	5655160	3L_5655160_SNP [dm3] 3L_5662060_SNP [dm6]	C	T	2.173e^-5	0.718	INTRON sif & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14460275	3R_14460275_SNP [dm3] 3R_18634553_SNP [dm6]	T	A	2.178e^-5	0.718	INTRON qin & 1 other
3R	9443875	3R_9443875_SNP [dm3] 3R_13618153_SNP [dm6]	T	A	2.187e^-5	0.718	EXON CR45680
3L	15864893	3L_15864893_SNP [dm3] 3L_15871793_SNP [dm6]	T	G	2.205e^-5	0.718	INTRON pHCl
3R	26189710	3R_26189710_SNP [dm3] 3R_30363988_SNP [dm6]	C	T	2.253e^-5	0.718	UTR_3_PRIME hdc
3L	15628408	3L_15628408_SNP [dm3] 3L_15635308_SNP [dm6]	T	A	2.352e^-5	0.718	UPSTREAM comm3 INTRON comm3
3R	9443770	3R_9443770_SNP [dm3] 3R_13618048_SNP [dm6]	T	A	2.403e^-5	0.718	EXON CR45680
3R	14460276	3R_14460276_SNP [dm3] 3R_18634554_SNP [dm6]	C	A	2.412e^-5	0.718	INTRON qin & 1 other
X	15261252	X_15261252_SNP [dm3] X_15367219_SNP [dm6]	C	T	2.421e^-5	0.718	INTRON acj6
2L	9594278	2L_9594278_SNP [dm3] 2L_9594278_SNP [dm6]	T	C	2.485e^-5	0.718	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4544731	3R_4544731_SNP [dm3] 3R_8719009_SNP [dm6]	G	A	2.485e^-5	0.718	UPSTREAM CG11760 & 1 other INTRON CG8116
3R	8935138	3R_8935138_SNP [dm3] 3R_13109416_SNP [dm6]	C	T	2.517e^-5	0.718	INTRON timeout
2L	6380594	2L_6380594_DEL [dm3] 2L_6380594_DEL [dm6]	GA	G	2.552e^-5	0.718	UPSTREAM CG9507 INTRON CG42368
2L	14014336	2L_14014336_SNP [dm3] 2L_14014336_SNP [dm6]	C	A	2.641e^-5	0.718	INTRON bgm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	8926369	3R_8926369_SNP [dm3] 3R_13100647_SNP [dm6]	C	G	2.686e^-5	0.718	INTRON timeout
X	7895908	X_7895908_SNP [dm3] X_8001875_SNP [dm6]	G	C	2.710e^-5	0.718	INTRON Tbh
3R	16378811	3R_16378811_SNP [dm3] 3R_20553089_SNP [dm6]	A	C	2.740e^-5	0.718	UPSTREAM Stat92E INTRON att-ORFA & 1 other	TF binding site mE1_TFBS_cad
2L	9136398	2L_9136398_SNP [dm3] 2L_9136398_SNP [dm6]	C	G	2.744e^-5	0.718	INTRON CG32982
3L	9634827	3L_9634827_SNP [dm3] 3L_9641727_SNP [dm6]	C	T	2.755e^-5	0.718	SYNONYMOUS_CODING CG18180 INTRON fry	TF binding site mE1_TFBS_cad
X	14381999	X_14381999_INS [dm3] X_14487966_INS [dm6]	C	GCA	2.828e^-5	0.718	INTERGENIC
3L	15751484	3L_15751484_SNP [dm3] 3L_15758384_SNP [dm6]	T	A	2.861e^-5	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	5806766	3R_5806766_SNP [dm3] 3R_9981044_SNP [dm6]	T	A	2.938e^-5	0.718	INTRON Glut4EF
2L	5961822	2L_5961822_SNP [dm3] 2L_5961822_SNP [dm6]	A	G	2.994e^-5	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10039855	2L_10039855_SNP [dm3] 2L_10039855_SNP [dm6]	T	C	3.006e^-5	0.718	DOWNSTREAM obst-B INTERGENIC
3R	17384407	3R_17384407_SNP [dm3] 3R_21558685_SNP [dm6]	C	A	3.035e^-5	0.718	INTERGENIC	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3R	16498262	3R_16498262_SNP [dm3] 3R_20672540_SNP [dm6]	C	T	3.076e^-5	0.718	UTR_3_PRIME Cpr92F
X	11274003	X_11274003_SNP [dm3] X_11379970_SNP [dm6]	G	A	3.077e^-5	0.718	INTRON dlg1
3R	17906774	3R_17906774_SNP [dm3] 3R_22081052_SNP [dm6]	T	C	3.223e^-5	0.718	INTRON CG13408	TF binding site mE1_TFBS_kn
2R	1674348	2R_1674348_SNP [dm3] 2R_5786843_SNP [dm6]	T	A	3.288e^-5	0.718	INTERGENIC
3L	19421720	3L_19421720_SNP [dm3] 3L_19428620_SNP [dm6]	T	A	3.338e^-5	0.718	INTERGENIC
2R	9344914	2R_9344914_SNP [dm3] 2R_13457409_SNP [dm6]	T	C	3.365e^-5	0.718	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10813788	3L_10813788_SNP [dm3] 3L_10820688_SNP [dm6]	C	T	3.387e^-5	0.718	INTERGENIC
3R	23452271	3R_23452271_SNP [dm3] 3R_27626549_SNP [dm6]	T	A	3.421e^-5	0.718	UPSTREAM CG5612 INTRON Tusp
3L	2040786	3L_2040786_SNP [dm3] 3L_2040786_SNP [dm6]	T	A	3.432e^-5	0.718	SYNONYMOUS_CODING sls
3R	5806591	3R_5806591_SNP [dm3] 3R_9980869_SNP [dm6]	C	T	3.473e^-5	0.718	INTRON Glut4EF
2L	14043327	2L_14043327_SNP [dm3] 2L_14043327_SNP [dm6]	T	C	3.496e^-5	0.718	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_dl
X	15261358	X_15261358_SNP [dm3] X_15367325_SNP [dm6]	C	A	3.545e^-5	0.718	INTRON acj6
3R	8929806	3R_8929806_SNP [dm3] 3R_13104084_SNP [dm6]	T	C	3.568e^-5	0.718	INTRON timeout
3R	8917153	3R_8917153_SNP [dm3] 3R_13091431_SNP [dm6]	C	T	3.582e^-5	0.718	INTRON timeout
3R	16308886	3R_16308886_SNP [dm3] 3R_20483164_SNP [dm6]	G	A	3.592e^-5	0.718	INTRON Gfrl
3R	19926658	3R_19926658_SNP [dm3] 3R_24100936_SNP [dm6]	C	A	3.678e^-5	0.718	DOWNSTREAM Syx1A INTRON 4EHP
3R	10370747	3R_10370747_SNP [dm3] 3R_14545025_SNP [dm6]	C	A	3.689e^-5	0.718	INTRON Pde6
X	17525365	X_17525365_SNP [dm3] X_17631332_SNP [dm6]	C	T	3.791e^-5	0.718	SYNONYMOUS_CODING CG8316 UPSTREAM CG5703
3R	18264198	3R_18264198_SNP [dm3] 3R_22438476_SNP [dm6]	A	G	3.820e^-5	0.718	INTERGENIC
3R	8976991	3R_8976991_SNP [dm3] 3R_13151269_SNP [dm6]	A	G	3.975e^-5	0.718	INTRON timeout & 2 others
3L	1029563	3L_1029563_SNP [dm3] 3L_1029563_SNP [dm6]	G	A	3.984e^-5	0.718	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad
3R	8926402	3R_8926402_SNP [dm3] 3R_13100680_SNP [dm6]	G	A	4.053e^-5	0.718	INTRON timeout
X	17179004	X_17179004_SNP [dm3] X_17284971_SNP [dm6]	C	G	4.057e^-5	0.718	UPSTREAM CG8661 DOWNSTREAM Fim INTRON CG5445	insulator Insulator_Class_II.mE01
2L	8866095	2L_8866095_SNP [dm3] 2L_8866095_SNP [dm6]	G	T	4.074e^-5	0.718	SYNONYMOUS_CODING CG32983 UPSTREAM CG9483 DOWNSTREAM CG32988 EXON CR45260	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	2422944	3L_2422944_DEL [dm3] 3L_2422944_DEL [dm6]	TT	T	4.118e^-5	0.718	INTRON CG45186
2L	11676226	2L_11676226_SNP [dm3] 2L_11676226_SNP [dm6]	C	A	4.155e^-5	0.718	INTERGENIC
3L	2527701	3L_2527701_INS [dm3] 3L_2527701_INS [dm6]	T	TAAATGAGACAC...	4.205e^-5	0.718	UPSTREAM CG32295 INTRON Spn
2L	6130306	2L_6130306_SNP [dm3] 2L_6130306_SNP [dm6]	C	G	4.213e^-5	0.718	SYNONYMOUS_CODING CG42730 UTR_5_PRIME tectonic UPSTREAM CG9222	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	18755087	3R_18755087_SNP [dm3] 3R_22929365_SNP [dm6]	C	T	4.215e^-5	0.718	INTRON klg
3L	2523797	3L_2523797_SNP [dm3] 3L_2523797_SNP [dm6]	G	A	4.294e^-5	0.718	INTRON Spn
3R	26114643	3R_26114643_INS [dm3] 3R_30288921_INS [dm6]	A	AATAA	4.349e^-5	0.718	INTRON hdc
3L	6875394	3L_6875394_SNP [dm3] 3L_6882294_SNP [dm6]	G	A	4.358e^-5	0.718	INTERGENIC
2L	4365855	2L_4365855_SNP [dm3] 2L_4365855_SNP [dm6]	G	T	4.385e^-5	0.718	INTRON Traf4	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	10462436	3L_10462436_SNP [dm3] 3L_10469336_SNP [dm6]	A	C	4.403e^-5	0.718	DOWNSTREAM S-Lap3 INTERGENIC
2L	6174585	2L_6174585_SNP [dm3] 2L_6174585_SNP [dm6]	G	T	4.473e^-5	0.718	INTERGENIC
3L	22530724	3L_22530724_SNP [dm3] 3L_22537624_SNP [dm6]	C	A	4.483e^-5	0.718	INTERGENIC
2L	5961016	2L_5961016_SNP [dm3] 2L_5961016_SNP [dm6]	A	T	4.496e^-5	0.718	UPSTREAM Vm26Aa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	26189680	3R_26189680_SNP [dm3] 3R_30363958_SNP [dm6]	A	T	4.589e^-5	0.718	UTR_3_PRIME hdc
2L	952804	2L_952804_SNP [dm3] 2L_952804_SNP [dm6]	G	A	4.602e^-5	0.718	SYNONYMOUS_CODING CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4364375	2L_4364375_SNP [dm3] 2L_4364375_SNP [dm6]	T	C	4.661e^-5	0.718	UPSTREAM CR45363 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	9781861	X_9781861_SNP [dm3] X_9887828_SNP [dm6]	T	A	4.819e^-5	0.718	DOWNSTREAM CG15249 INTERGENIC
3L	2692438	3L_2692438_SNP [dm3] 3L_2692438_SNP [dm6]	T	C	4.862e^-5	0.718	INTRON Fife
3R	9446540	3R_9446540_SNP [dm3] 3R_13620818_SNP [dm6]	G	C	4.882e^-5	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4043138	2L_4043138_SNP [dm3] 2L_4043138_SNP [dm6]	T	A	4.901e^-5	0.718	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10462785	3L_10462785_SNP [dm3] 3L_10469685_SNP [dm6]	A	G	4.903e^-5	0.718	DOWNSTREAM S-Lap3 INTERGENIC
3R	4861635	3R_4861635_SNP [dm3] 3R_9035913_SNP [dm6]	C	A	4.957e^-5	0.718	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	3423289	3L_3423289_INS [dm3] 3L_3423289_INS [dm6]	A	ACA	5.004e^-5	0.718	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10589020	X_10589020_SNP [dm3] X_10694987_SNP [dm6]	A	G	5.064e^-5	0.718	INTRON X11Lbeta
3R	8978787	3R_8978787_SNP [dm3] 3R_13153065_SNP [dm6]	C	T	5.127e^-5	0.718	INTRON timeout & 2 others
2R	8921196	2R_8921196_SNP [dm3] 2R_13033691_SNP [dm6]	A	C	5.176e^-5	0.718	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26114762	3R_26114762_INS [dm3] 3R_30289040_INS [dm6]	C	CTTAGGCTTC	5.213e^-5	0.718	INTRON hdc
3L	2527687	3L_2527687_SNP [dm3] 3L_2527687_SNP [dm6]	T	G	5.249e^-5	0.718	UPSTREAM CG32295 INTRON Spn
X	4707004	X_4707004_SNP [dm3] X_4812971_SNP [dm6]	A	T	5.250e^-5	0.718	INTERGENIC
3R	5286652	3R_5286652_SNP [dm3] 3R_9460930_SNP [dm6]	C	T	5.324e^-5	0.718	UPSTREAM GstZ2 DOWNSTREAM CG16779 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	26535352	3R_26535352_SNP [dm3] 3R_30709630_SNP [dm6]	A	G	5.400e^-5	0.718	INTERGENIC
3L	504792	3L_504792_SNP [dm3] 3L_504792_SNP [dm6]	T	C	5.455e^-5	0.718	INTRON klar
2L	4193434	2L_4193434_SNP [dm3] 2L_4193434_SNP [dm6]	G	A	5.474e^-5	0.718	SYNONYMOUS_CODING CG3714
2L	5884961	2L_5884961_SNP [dm3] 2L_5884961_SNP [dm6]	A	C	5.499e^-5	0.718	UTR_5_PRIME CG43185 UPSTREAM Sfp26Ac DOWNSTREAM CG44574
3R	8929414	3R_8929414_SNP [dm3] 3R_13103692_SNP [dm6]	G	T	5.704e^-5	0.718	INTRON timeout
3L	2041233	3L_2041233_SNP [dm3] 3L_2041233_SNP [dm6]	C	A	5.705e^-5	0.718	NON_SYNONYMOUS_CODING sls
2R	7843258	2R_7843258_SNP [dm3] 2R_11955753_SNP [dm6]	T	G	5.739e^-5	0.718	INTRON CG13188
X	17178997	X_17178997_SNP [dm3] X_17284964_SNP [dm6]	A	T	5.801e^-5	0.718	UPSTREAM CG8661 DOWNSTREAM Fim INTRON CG5445
X	13836147	X_13836147_SNP [dm3] X_13942114_SNP [dm6]	G	A	5.854e^-5	0.718	INTRON mamo
3L	13184685	3L_13184685_SNP [dm3] 3L_13191585_SNP [dm6]	A	G	5.888e^-5	0.718	INTERGENIC
3R	9260710	3R_9260710_SNP [dm3] 3R_13434988_SNP [dm6]	T	A	5.928e^-5	0.718	UPSTREAM yrt INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu
X	3788340	X_3788340_DEL [dm3] X_3894307_DEL [dm6]	AA	A	5.997e^-5	0.718	UTR_3_PRIME CG42541 DOWNSTREAM CG42541
3R	25051355	3R_25051355_SNP [dm3] 3R_29225633_SNP [dm6]	A	T	6.056e^-5	0.718	SYNONYMOUS_CODING Brd8 DOWNSTREAM CG14507	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14381958	X_14381958_SNP [dm3] X_14487925_SNP [dm6]	A	T	6.104e^-5	0.718	INTERGENIC
2L	3503064	2L_3503064_SNP [dm3] 2L_3503064_SNP [dm6]	C	T	6.104e^-5	0.718	NON_SYNONYMOUS_CODING tim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17906943	3R_17906943_SNP [dm3] 3R_22081221_SNP [dm6]	A	C	6.141e^-5	0.718	INTRON CG13408	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	3912038	3L_3912038_DEL [dm3] 3L_3912038_DEL [dm6]	ACCACAAT	A	6.155e^-5	0.718	INTRON Eip63F-1
3L	3912047	3L_3912047_SNP [dm3] 3L_3912047_SNP [dm6]	G	A	6.155e^-5	0.718	INTRON Eip63F-1
3R	8937238	3R_8937238_SNP [dm3] 3R_13111516_SNP [dm6]	A	T	6.156e^-5	0.718	INTRON timeout
3L	10462850	3L_10462850_SNP [dm3] 3L_10469750_SNP [dm6]	T	A	6.193e^-5	0.718	DOWNSTREAM S-Lap3 INTERGENIC
2L	7044606	2L_7044606_SNP [dm3] 2L_7044606_SNP [dm6]	A	T	6.204e^-5	0.718	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12137494	2L_12137494_SNP [dm3] 2L_12137494_SNP [dm6]	A	T	6.279e^-5	0.718	UPSTREAM Gr33a INTERGENIC
2L	14628386	2L_14628386_SNP [dm3] 2L_14628386_SNP [dm6]	C	A	6.297e^-5	0.718	INTRON osp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12395159	2L_12395159_SNP [dm3] 2L_12395159_SNP [dm6]	A	G	6.301e^-5	0.718	INTRON bru-2
2L	14628368	2L_14628368_SNP [dm3] 2L_14628368_SNP [dm6]	T	C	6.313e^-5	0.718	INTRON osp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	17179015	X_17179015_SNP [dm3] X_17284982_SNP [dm6]	T	A	6.315e^-5	0.718	UPSTREAM CG8661 DOWNSTREAM Fim INTRON CG5445
3L	7982700	3L_7982700_INS [dm3] 3L_7989600_INS [dm6]	A	AA	6.373e^-5	0.718	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8977123	3R_8977123_SNP [dm3] 3R_13151401_SNP [dm6]	A	G	6.388e^-5	0.718	INTRON timeout & 2 others
3R	14460625	3R_14460625_SNP [dm3] 3R_18634903_SNP [dm6]	A	T	6.507e^-5	0.718	INTRON qin & 1 other
2R	13399609	2R_13399609_SNP [dm3] 2R_17512104_SNP [dm6]	T	C	6.521e^-5	0.718	UPSTREAM CG4847 DOWNSTREAM CG34193 INTRON CG4847	TF binding site mE1_TFBS_cad
3R	8925994	3R_8925994_SNP [dm3] 3R_13100272_SNP [dm6]	C	T	6.530e^-5	0.718	INTRON timeout	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22441123	3R_22441123_SNP [dm3] 3R_26615401_SNP [dm6]	A	G	6.561e^-5	0.718	INTERGENIC
3R	8976346	3R_8976346_SNP [dm3] 3R_13150624_SNP [dm6]	C	T	6.583e^-5	0.718	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
2L	8653407	2L_8653407_SNP [dm3] 2L_8653407_SNP [dm6]	A	G	6.644e^-5	0.718	INTRON Sema-1a
3R	21691431	3R_21691431_SNP [dm3] 3R_25865709_SNP [dm6]	G	T	6.667e^-5	0.718	INTRON CG5890
3L	9207645	3L_9207645_SNP [dm3] 3L_9214545_SNP [dm6]	G	T	6.687e^-5	0.718	INTRON CG4476
3L	4087000	3L_4087000_SNP [dm3] 3L_4087000_SNP [dm6]	C	T	6.690e^-5	0.718	UPSTREAM CG14989 INTRON Gad1
3R	18979494	3R_18979494_SNP [dm3] 3R_23153772_SNP [dm6]	C	T	6.745e^-5	0.718	UTR_3_PRIME unk
3R	8977137	3R_8977137_DEL [dm3] 3R_13151415_DEL [dm6]	AGTGTGTAATATTTTTCGCT...	GTTCG	6.779e^-5	0.718	INTRON timeout & 2 others
2L	18299079	2L_18299079_SNP [dm3] 2L_18299079_SNP [dm6]	G	T	6.789e^-5	0.718	INTERGENIC
3R	23452230	3R_23452230_DEL [dm3] 3R_27626508_DEL [dm6]	AA	A	6.850e^-5	0.718	UPSTREAM CG5612 INTRON Tusp
2L	5417843	2L_5417843_SNP [dm3] 2L_5417843_SNP [dm6]	T	C	6.866e^-5	0.718	INTERGENIC
3L	22005868	3L_22005868_SNP [dm3] 3L_22012768_SNP [dm6]	T	C	6.872e^-5	0.718	INTERGENIC
3R	6872566	3R_6872566_SNP [dm3] 3R_11046844_SNP [dm6]	A	T	6.889e^-5	0.718	DOWNSTREAM CG34114 INTRON CG34114
2L	12117506	2L_12117506_SNP [dm3] 2L_12117506_SNP [dm6]	A	T	6.945e^-5	0.718	INTRON CG17211
3L	17723731	3L_17723731_SNP [dm3] 3L_17730631_SNP [dm6]	A	T	6.959e^-5	0.718	INTRON Ccn
3L	6150519	3L_6150519_SNP [dm3] 3L_6157419_SNP [dm6]	T	C	6.976e^-5	0.718	UPSTREAM CG13297 DOWNSTREAM Cpr65Ay INTERGENIC
3L	18616883	3L_18616883_SNP [dm3] 3L_18623783_SNP [dm6]	C	T	6.986e^-5	0.718	SYNONYMOUS_CODING bora	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18439586	X_18439586_SNP [dm3] X_18545553_SNP [dm6]	A	G	6.988e^-5	0.718	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8045333	3R_8045333_SNP [dm3] 3R_12219611_SNP [dm6]	G	C	7.221e^-5	0.718	UTR_5_PRIME CG4848 DOWNSTREAM CG4860	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	3551888	2L_3551888_SNP [dm3] 2L_3551888_SNP [dm6]	T	C	7.243e^-5	0.718	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4543850	3R_4543850_SNP [dm3] 3R_8718128_SNP [dm6]	G	A	7.264e^-5	0.718	UTR_3_PRIME CG8116 INTRON Cks85A
2L	10114480	2L_10114480_SNP [dm3] 2L_10114480_SNP [dm6]	A	G	7.360e^-5	0.718	INTRON CG44153 & 1 other
3R	18979572	3R_18979572_SNP [dm3] 3R_23153850_SNP [dm6]	C	T	7.376e^-5	0.718	UTR_3_PRIME unk
3L	14988158	3L_14988158_SNP [dm3] 3L_14995058_SNP [dm6]	T	C	7.392e^-5	0.718	INTRON Zip71B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21657882	3R_21657882_SNP [dm3] 3R_25832160_SNP [dm6]	C	A	7.408e^-5	0.718	UPSTREAM alpha4GT2 & 1 other INTERGENIC
3R	15319247	3R_15319247_SNP [dm3] 3R_19493525_SNP [dm6]	A	T	7.414e^-5	0.718	INTRON Dys
3R	9017511	3R_9017511_SNP [dm3] 3R_13191789_SNP [dm6]	G	C	7.435e^-5	0.718	NON_SYNONYMOUS_CODING CG8141	TF binding site BDTNP1_TFBS_twi
2L	14628374	2L_14628374_SNP [dm3] 2L_14628374_SNP [dm6]	A	G	7.462e^-5	0.718	INTRON osp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9290158	3R_9290158_SNP [dm3] 3R_13464436_SNP [dm6]	T	C	7.508e^-5	0.718	UPSTREAM mir-252 DOWNSTREAM CG14372 INTRON CR17025
3R	8940399	3R_8940399_SNP [dm3] 3R_13114677_SNP [dm6]	T	C	7.525e^-5	0.718	INTRON timeout
X	19776793	X_19776793_SNP [dm3] X_19882760_SNP [dm6]	C	A	7.625e^-5	0.718	INTRON Hers	TF binding site BDTNP1_TFBS_da
3R	5882742	3R_5882742_SNP [dm3] 3R_10057020_SNP [dm6]	C	T	7.704e^-5	0.718	UPSTREAM Npc2d INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	8573329	3L_8573329_SNP [dm3] 3L_8580229_SNP [dm6]	T	A	7.720e^-5	0.718	INTRON CG43078
3L	5880913	3L_5880913_SNP [dm3] 3L_5887813_SNP [dm6]	T	G	7.727e^-5	0.718	INTERGENIC
3R	9101565	3R_9101565_SNP [dm3] 3R_13275843_SNP [dm6]	C	G	7.747e^-5	0.718	INTERGENIC
2L	9591667	2L_9591667_SNP [dm3] 2L_9591667_SNP [dm6]	T	A	7.769e^-5	0.718	UTR_3_PRIME CG3841	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
X	16010255	X_16010255_SNP [dm3] X_16116222_SNP [dm6]	C	T	7.809e^-5	0.718	INTERGENIC	transposable element FlyBase
2L	5884990	2L_5884990_SNP [dm3] 2L_5884990_SNP [dm6]	A	C	7.852e^-5	0.718	UTR_5_PRIME CG43185 UPSTREAM Sfp26Ac DOWNSTREAM CG44574 INTRON CG43185
3R	6837391	3R_6837391_SNP [dm3] 3R_11011669_SNP [dm6]	A	G	7.983e^-5	0.718	INTRON CG34114
2L	12567573	2L_12567573_SNP [dm3] 2L_12567573_SNP [dm6]	A	G	7.991e^-5	0.718	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	1441191	3L_1441191_SNP [dm3] 3L_1441191_SNP [dm6]	A	G	8.033e^-5	0.718	INTRON Ptp61F
2L	10065314	2L_10065314_SNP [dm3] 2L_10065314_SNP [dm6]	G	A	8.078e^-5	0.718	SPLICE_SITE_REGION CG44153 SYNONYMOUS_CODING CG44153	TF binding site mE1_TFBS_chinmo
X	9781885	X_9781885_SNP [dm3] X_9887852_SNP [dm6]	A	G	8.162e^-5	0.718	DOWNSTREAM CG15249 INTERGENIC
3R	5847134	3R_5847134_SNP [dm3] 3R_10021412_SNP [dm6]	A	T	8.243e^-5	0.718	START_GAINED Mical UTR_5_PRIME Mical INTRON Mical	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10019441	X_10019441_SNP [dm3] X_10125408_SNP [dm6]	A	T	8.251e^-5	0.718	DOWNSTREAM snoRNA:Me18S-A627 INTRON CR44894 & 1 other
2L	7145745	2L_7145745_SNP [dm3] 2L_7145745_SNP [dm6]	T	C	8.277e^-5	0.718	DOWNSTREAM CR44612 INTRON Pvf3
2L	9594467	2L_9594467_SNP [dm3] 2L_9594467_SNP [dm6]	G	A	8.286e^-5	0.718	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4194578	2L_4194578_SNP [dm3] 2L_4194578_SNP [dm6]	C	T	8.611e^-5	0.718	INTRON CG3714
3R	5847555	3R_5847555_SNP [dm3] 3R_10021833_SNP [dm6]	C	T	8.649e^-5	0.718	UTR_5_PRIME Mical UPSTREAM Mical INTRON Mical	TF binding site mE1_TFBS_inv
3R	8976984	3R_8976984_SNP [dm3] 3R_13151262_SNP [dm6]	T	A	8.694e^-5	0.718	INTRON timeout & 2 others
3L	4941841	3L_4941841_SNP [dm3] 3L_4941841_SNP [dm6]	T	C	8.714e^-5	0.718	INTRON Con
2R	11227652	2R_11227652_INS [dm3] 2R_15340147_INS [dm6]	T	AATGAC	8.770e^-5	0.718	UPSTREAM unc-5 DOWNSTREAM Hr51 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_zfh1
3L	2354396	3L_2354396_SNP [dm3] 3L_2354396_SNP [dm6]	C	A	8.793e^-5	0.718	INTERGENIC	TF binding site mE1_TFBS_inv
2L	22344434	2L_22344434_SNP [dm3] 2L_22344434_SNP [dm6]	C	A	8.850e^-5	0.718	INTRON CG17018
X	17179019	X_17179019_SNP [dm3] X_17284986_SNP [dm6]	G	C	8.894e^-5	0.718	UPSTREAM CG8661 DOWNSTREAM Fim INTRON CG5445
2L	12137491	2L_12137491_DEL [dm3] 2L_12137491_DEL [dm6]	TG	T	8.970e^-5	0.718	UPSTREAM Gr33a INTERGENIC
2L	15445625	2L_15445625_SNP [dm3] 2L_15445625_SNP [dm6]	G	C	8.987e^-5	0.718	INTERGENIC
2R	18394200	2R_18394200_SNP [dm3] 2R_22506695_SNP [dm6]	G	C	9.030e^-5	0.718	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18394218	2R_18394218_SNP [dm3] 2R_22506713_SNP [dm6]	G	T	9.030e^-5	0.718	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	5216126	X_5216126_SNP [dm3] X_5322093_SNP [dm6]	A	G	9.130e^-5	0.718	SYNONYMOUS_CODING Rnp4F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	10021271	X_10021271_INS [dm3] X_10127238_INS [dm6]	T	TTATATAGTATGT...	9.131e^-5	0.718	INTRON CR44894 & 1 other
3R	22087533	3R_22087533_SNP [dm3] 3R_26261811_SNP [dm6]	C	A	9.146e^-5	0.718	UPSTREAM Ald & 1 other DOWNSTREAM CR44321 INTERGENIC
3L	8910621	3L_8910621_SNP [dm3] 3L_8917521_SNP [dm6]	C	G	9.152e^-5	0.718	INTRON Tsp66E
2L	6369079	2L_6369079_SNP [dm3] 2L_6369079_SNP [dm6]	T	G	9.208e^-5	0.718	SYNONYMOUS_CODING CG9505	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20723608	X_20723608_SNP [dm3] X_20852581_SNP [dm6]	A	C	9.211e^-5	0.718	INTRON shakB	TF binding site mE1_TFBS_sbb
2L	9591946	2L_9591946_SNP [dm3] 2L_9591946_SNP [dm6]	A	G	9.213e^-5	0.718	DOWNSTREAM CG3841 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
3R	11310268	3R_11310268_INS [dm3] 3R_15484546_INS [dm6]	G	GCAG	9.303e^-5	0.718	UTR_3_PRIME Rh6 DOWNSTREAM Trissin
2R	11227610	2R_11227610_SNP [dm3] 2R_15340105_SNP [dm6]	C	T	9.334e^-5	0.718	UPSTREAM unc-5 DOWNSTREAM Hr51 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_zfh1
X	15261232	X_15261232_SNP [dm3] X_15367199_SNP [dm6]	G	T	9.368e^-5	0.718	INTRON acj6
3R	16351519	3R_16351519_SNP [dm3] 3R_20525797_SNP [dm6]	A	T	9.374e^-5	0.718	INTERGENIC
X	16010249	X_16010249_SNP [dm3] X_16116216_SNP [dm6]	T	G	9.430e^-5	0.718	INTERGENIC
3R	25148047	3R_25148047_SNP [dm3] 3R_29322325_SNP [dm6]	G	A	9.527e^-5	0.718	INTERGENIC
3L	15751496	3L_15751496_SNP [dm3] 3L_15758396_SNP [dm6]	C	A	9.533e^-5	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	16905991	2R_16905991_SNP [dm3] 2R_21018486_SNP [dm6]	T	A	9.539e^-5	0.718	UPSTREAM RIC-3 INTRON RIC-3
3L	12556452	3L_12556452_SNP [dm3] 3L_12563352_SNP [dm6]	T	C	9.562e^-5	0.718	INTRON sowah
2L	5879424	2L_5879424_SNP [dm3] 2L_5879424_SNP [dm6]	T	C	9.750e^-5	0.718	START_GAINED rau UTR_5_PRIME rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	1003968	3L_1003968_SNP [dm3] 3L_1003968_SNP [dm6]	G	T	9.770e^-5	0.718	INTRON trio	TF binding site mE1_TFBS_chinmo
2L	16114337	2L_16114337_SNP [dm3] 2L_16114337_SNP [dm6]	G	A	9.775e^-5	0.718	INTERGENIC
2R	18436639	2R_18436639_SNP [dm3] 2R_22549134_SNP [dm6]	A	C	9.810e^-5	0.718	UPSTREAM CG6018 INTRON px
2L	14246782	2L_14246782_SNP [dm3] 2L_14246782_SNP [dm6]	G	A	9.885e^-5	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2040618	3L_2040618_DEL [dm3] 3L_2040618_DEL [dm6]	CAGGATCAC	C	9.887e^-5	0.718	INTRON sls
2R	11227629	2R_11227629_SNP [dm3] 2R_15340124_SNP [dm6]	G	A	9.890e^-5	0.718	UPSTREAM unc-5 DOWNSTREAM Hr51 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_zfh1
3R	14231286	3R_14231286_SNP [dm3] 3R_18405564_SNP [dm6]	A	G	9.915e^-5	0.718	SYNONYMOUS_CODING CG7685 DOWNSTREAM koko & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8940509	3R_8940509_SNP [dm3] 3R_13114787_SNP [dm6]	T	C	9.938e^-5	0.718	INTRON timeout
3R	4541786	3R_4541786_SNP [dm3] 3R_8716064_SNP [dm6]	A	T	9.976e^-5	0.718	UPSTREAM CG8116 & 1 other DOWNSTREAM CG8112 INTRON Cks85A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	16594265	2L_16594265_SNP [dm3] 2L_16594265_SNP [dm6]	A	C	9.976e^-5	0.718	INTRON CG42389
3L	14942608	3L_14942608_SNP [dm3] 3L_14949508_SNP [dm6]	A	G	1.010e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18559238	3L_18559238_SNP [dm3] 3L_18566138_SNP [dm6]	T	G	1.014e^-4	0.718	INTRON AstC-R1
3L	11135325	3L_11135325_DEL [dm3] 3L_11142225_DEL [dm6]	TTT	T	1.018e^-4	0.718	INTRON CG32082
X	5449568	X_5449568_SNP [dm3] X_5555535_SNP [dm6]	C	T	1.022e^-4	0.718	INTRON Vsx2	TF binding site mE1_TFBS_cnc mE1_TFBS_Kr
3R	8929853	3R_8929853_SNP [dm3] 3R_13104131_SNP [dm6]	C	T	1.022e^-4	0.718	INTRON timeout
X	18439213	X_18439213_SNP [dm3] X_18545180_SNP [dm6]	A	G	1.022e^-4	0.718	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3419747	3L_3419747_SNP [dm3] 3L_3419747_SNP [dm6]	C	A	1.023e^-4	0.718	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1258662	2L_1258662_SNP [dm3] 2L_1258662_SNP [dm6]	G	A	1.023e^-4	0.718	INTRON robo3
2L	13423097	2L_13423097_SNP [dm3] 2L_13423097_SNP [dm6]	A	G	1.035e^-4	0.718	START_GAINED CG42784 UTR_5_PRIME CG42784
3R	8929832	3R_8929832_SNP [dm3] 3R_13104110_SNP [dm6]	A	C	1.036e^-4	0.718	INTRON timeout
3L	2527689	3L_2527689_DEL [dm3] 3L_2527689_DEL [dm6]	TGGCAAATTA	T	1.038e^-4	0.718	UPSTREAM CG32295 INTRON Spn
3R	23558676	3R_23558676_SNP [dm3] 3R_27732954_SNP [dm6]	T	C	1.048e^-4	0.718	INTERGENIC
3R	25125916	3R_25125916_SNP [dm3] 3R_29300194_SNP [dm6]	C	G	1.049e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	12864515	3L_12864515_SNP [dm3] 3L_12871415_SNP [dm6]	C	A	1.050e^-4	0.718	INTERGENIC
2L	22360399	2L_22360399_SNP [dm3] 2L_22360399_SNP [dm6]	G	T	1.051e^-4	0.718	INTRON CG17018
2L	6737514	2L_6737514_SNP [dm3] 2L_6737514_SNP [dm6]	C	T	1.052e^-4	0.718	SYNONYMOUS_CODING TTLL3A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9311373	2R_9311373_SNP [dm3] 2R_13423868_SNP [dm6]	A	C	1.058e^-4	0.718	UPSTREAM CG30060 INTRON CG42321
2R	18374248	2R_18374248_SNP [dm3] 2R_22486743_SNP [dm6]	C	T	1.067e^-4	0.718	NON_SYNONYMOUS_CODING CG4554
2R	10214943	2R_10214943_SNP [dm3] 2R_14327438_SNP [dm6]	G	A	1.069e^-4	0.718	INTRON Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8976262	3R_8976262_SNP [dm3] 3R_13150540_SNP [dm6]	A	T	1.077e^-4	0.718	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
X	14381956	X_14381956_SNP [dm3] X_14487923_SNP [dm6]	G	C	1.081e^-4	0.718	INTERGENIC
2L	12117579	2L_12117579_SNP [dm3] 2L_12117579_SNP [dm6]	G	A	1.087e^-4	0.718	INTRON CG17211
2R	11227618	2R_11227618_SNP [dm3] 2R_15340113_SNP [dm6]	T	G	1.101e^-4	0.718	UPSTREAM unc-5 DOWNSTREAM Hr51 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_zfh1
3R	5852352	3R_5852352_SNP [dm3] 3R_10026630_SNP [dm6]	T	A	1.103e^-4	0.718	INTRON Mical
2L	7682229	2L_7682229_SNP [dm3] 2L_7682229_SNP [dm6]	C	T	1.109e^-4	0.718	SYNONYMOUS_CODING Myo28B1	TF binding site mE1_TFBS_sens
2L	6376315	2L_6376315_SNP [dm3] 2L_6376315_SNP [dm6]	T	C	1.115e^-4	0.718	SYNONYMOUS_CODING slam	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	9018051	3R_9018051_SNP [dm3] 3R_13192329_SNP [dm6]	G	C	1.120e^-4	0.718	NON_SYNONYMOUS_CODING CG8141
3R	25518523	3R_25518523_SNP [dm3] 3R_29692801_SNP [dm6]	G	A	1.122e^-4	0.718	UTR_5_PRIME dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	1615781	X_1615781_SNP [dm3] X_1721748_SNP [dm6]	C	T	1.122e^-4	0.718	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	4706894	X_4706894_SNP [dm3] X_4812861_SNP [dm6]	G	A	1.127e^-4	0.718	INTERGENIC
2L	12055686	2L_12055686_SNP [dm3] 2L_12055686_SNP [dm6]	C	A	1.128e^-4	0.718	UPSTREAM RpL7-like & 2 others INTRON JhI-21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	8932836	3R_8932836_SNP [dm3] 3R_13107114_SNP [dm6]	G	A	1.133e^-4	0.718	INTRON timeout
3L	3430842	3L_3430842_SNP [dm3] 3L_3430842_SNP [dm6]	A	G	1.139e^-4	0.718	INTRON eIF5B
3L	10465626	3L_10465626_SNP [dm3] 3L_10472526_SNP [dm6]	G	A	1.140e^-4	0.718	INTERGENIC
3L	2040709	3L_2040709_SNP [dm3] 3L_2040709_SNP [dm6]	C	A	1.140e^-4	0.718	INTRON sls
2R	8921190	2R_8921190_SNP [dm3] 2R_13033685_SNP [dm6]	C	A	1.143e^-4	0.718	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	5907409	3L_5907409_SNP [dm3] 3L_5914309_SNP [dm6]	T	A	1.151e^-4	0.718	INTRON CG13288
3L	14942609	3L_14942609_SNP [dm3] 3L_14949509_SNP [dm6]	T	A	1.152e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17272365	2L_17272365_SNP [dm3] 2L_17272365_SNP [dm6]	G	A	1.153e^-4	0.718	INTERGENIC
2R	9330890	2R_9330890_DEL [dm3] 2R_13443385_DEL [dm6]	ATCAA	A	1.154e^-4	0.718	UTR_3_PRIME cnn INTRON cnn
2R	9330896	2R_9330896_SNP [dm3] 2R_13443391_SNP [dm6]	T	G	1.154e^-4	0.718	UTR_3_PRIME cnn INTRON cnn
3R	8976180	3R_8976180_SNP [dm3] 3R_13150458_SNP [dm6]	A	G	1.155e^-4	0.718	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
2L	3766024	2L_3766024_SNP [dm3] 2L_3766024_SNP [dm6]	C	T	1.157e^-4	0.718	SYNONYMOUS_CODING CG43707 UPSTREAM CG43707 DOWNSTREAM CG43703 INTRON CG43707	TF binding site mE1_TFBS_Trl
3L	7279316	3L_7279316_SNP [dm3] 3L_7286216_SNP [dm6]	G	A	1.157e^-4	0.718	INTRON unc-13-4A
2L	6130171	2L_6130171_SNP [dm3] 2L_6130171_SNP [dm6]	T	G	1.162e^-4	0.718	SYNONYMOUS_CODING CG42730 UTR_5_PRIME tectonic UPSTREAM CG9222	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9591463	2L_9591463_SNP [dm3] 2L_9591463_SNP [dm6]	G	C	1.163e^-4	0.718	NON_SYNONYMOUS_CODING CG3841	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3L	2422947	3L_2422947_SNP [dm3] 3L_2422947_SNP [dm6]	C	T	1.164e^-4	0.718	INTRON CG45186
2L	14330384	2L_14330384_SNP [dm3] 2L_14330384_SNP [dm6]	C	T	1.178e^-4	0.718	SYNONYMOUS_CODING ms_2_34Fe	TF binding site mE1_TFBS_cad
X	17177728	X_17177728_SNP [dm3] X_17283695_SNP [dm6]	A	G	1.179e^-4	0.718	UPSTREAM CG8664 DOWNSTREAM CG8661 INTRON CG5445
2L	14366899	2L_14366899_SNP [dm3] 2L_14366899_SNP [dm6]	T	C	1.180e^-4	0.718	DOWNSTREAM spel1 INTERGENIC
3L	4947200	3L_4947200_SNP [dm3] 3L_4947200_SNP [dm6]	A	T	1.194e^-4	0.718	INTRON Con
3R	26259507	3R_26259507_INS [dm3] 3R_30433785_INS [dm6]	G	GG	1.200e^-4	0.718	INTRON CG15534
3R	9017301	3R_9017301_SNP [dm3] 3R_13191579_SNP [dm6]	G	A	1.206e^-4	0.718	UPSTREAM CG8141 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	8935454	3R_8935454_SNP [dm3] 3R_13109732_SNP [dm6]	A	T	1.206e^-4	0.718	INTRON timeout
2L	10105501	2L_10105501_SNP [dm3] 2L_10105501_SNP [dm6]	T	C	1.220e^-4	0.718	INTRON CG44153 & 1 other
3R	23923437	3R_23923437_DEL [dm3] 3R_28097715_DEL [dm6]	AGTGCAGTCGAGTGGCACAG...	TGAGTGCAGTCG...	1.222e^-4	0.718	INTERGENIC
2R	16910074	2R_16910074_SNP [dm3] 2R_21022569_SNP [dm6]	C	A	1.222e^-4	0.718	INTRON RIC-3
X	11274005	X_11274005_SNP [dm3] X_11379972_SNP [dm6]	T	C	1.230e^-4	0.718	INTRON dlg1
2L	5417810	2L_5417810_SNP [dm3] 2L_5417810_SNP [dm6]	A	G	1.240e^-4	0.718	INTERGENIC
3R	17282524	3R_17282524_SNP [dm3] 3R_21456802_SNP [dm6]	A	G	1.241e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4362872	3R_4362872_SNP [dm3] 3R_8537150_SNP [dm6]	A	C	1.241e^-4	0.718	INTERGENIC
3R	8519144	3R_8519144_SNP [dm3] 3R_12693422_SNP [dm6]	C	A	1.253e^-4	0.718	SYNONYMOUS_CODING Arp1 UPSTREAM CG31347 DOWNSTREAM CG14391	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9017465	3R_9017465_SNP [dm3] 3R_13191743_SNP [dm6]	T	G	1.257e^-4	0.718	NON_SYNONYMOUS_CODING CG8141	TF binding site BDTNP1_TFBS_twi
3R	4522635	3R_4522635_SNP [dm3] 3R_8696913_SNP [dm6]	G	C	1.259e^-4	0.718	INTRON hb	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_Trl
2L	9591429	2L_9591429_SNP [dm3] 2L_9591429_SNP [dm6]	C	T	1.259e^-4	0.718	NON_SYNONYMOUS_CODING CG3841	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17906694	3R_17906694_SNP [dm3] 3R_22080972_SNP [dm6]	A	C	1.260e^-4	0.718	INTRON CG13408	TF binding site mE1_TFBS_kn
3R	5805136	3R_5805136_SNP [dm3] 3R_9979414_SNP [dm6]	C	T	1.265e^-4	0.718	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	7392205	2R_7392205_SNP [dm3] 2R_11504700_SNP [dm6]	T	A	1.267e^-4	0.718	INTRON inv
X	16147824	X_16147824_SNP [dm3] X_16253791_SNP [dm6]	C	A	1.280e^-4	0.718	UPSTREAM snRNA:U2:14B DOWNSTREAM snRNA:U5:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	26115624	3R_26115624_SNP [dm3] 3R_30289902_SNP [dm6]	T	G	1.282e^-4	0.718	INTRON hdc
2L	22321657	2L_22321657_SNP [dm3] 2L_22321657_SNP [dm6]	G	A	1.284e^-4	0.718	INTRON CG17018	transposable element FlyBase
2L	5417770	2L_5417770_SNP [dm3] 2L_5417770_SNP [dm6]	C	G	1.288e^-4	0.718	INTERGENIC
2R	19490547	2R_19490547_SNP [dm3] 2R_23603024_SNP [dm6]	A	G	1.294e^-4	0.718	NON_SYNONYMOUS_CODING CG5398 UPSTREAM CG43209 DOWNSTREAM CG17664	TF binding site mE1_TFBS_chinmo
3L	12864266	3L_12864266_SNP [dm3] 3L_12871166_SNP [dm6]	C	G	1.294e^-4	0.718	INTERGENIC
3R	8928451	3R_8928451_SNP [dm3] 3R_13102729_SNP [dm6]	C	G	1.304e^-4	0.718	INTRON timeout
3R	16825462	3R_16825462_SNP [dm3] 3R_20999740_SNP [dm6]	A	G	1.310e^-4	0.718	INTRON Calx
2R	13088095	2R_13088095_SNP [dm3] 2R_17200590_SNP [dm6]	C	T	1.313e^-4	0.718	INTERGENIC
3L	17723778	3L_17723778_DEL [dm3] 3L_17730678_DEL [dm6]	GAGGAAA	G	1.320e^-4	0.718	INTRON Ccn
3L	17723790	3L_17723790_SNP [dm3] 3L_17730690_SNP [dm6]	C	A	1.320e^-4	0.718	INTRON Ccn
3R	4776416	3R_4776416_SNP [dm3] 3R_8950694_SNP [dm6]	G	T	1.334e^-4	0.718	UTR_3_PRIME CG11966
3R	9017397	3R_9017397_SNP [dm3] 3R_13191675_SNP [dm6]	A	C	1.335e^-4	0.718	UTR_5_PRIME CG8141	TF binding site BDTNP1_TFBS_twi
3R	9017405	3R_9017405_SNP [dm3] 3R_13191683_SNP [dm6]	T	A	1.335e^-4	0.718	UTR_5_PRIME CG8141	TF binding site BDTNP1_TFBS_twi
2R	8921197	2R_8921197_SNP [dm3] 2R_13033692_SNP [dm6]	C	T	1.339e^-4	0.718	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	18438146	X_18438146_SNP [dm3] X_18544113_SNP [dm6]	T	G	1.353e^-4	0.718	INTRON Bx
X	19368179	X_19368179_SNP [dm3] X_19474146_SNP [dm6]	T	G	1.362e^-4	0.718	UPSTREAM CG12200 DOWNSTREAM CG32533 INTERGENIC	TF binding site mE1_TFBS_cad
3R	5847869	3R_5847869_SNP [dm3] 3R_10022147_SNP [dm6]	C	G	1.362e^-4	0.718	UPSTREAM Mical DOWNSTREAM CG31407 INTRON Mical	TF binding site mE1_TFBS_inv
2L	7238763	2L_7238763_SNP [dm3] 2L_7238763_SNP [dm6]	C	T	1.365e^-4	0.718	INTRON Ndae1
3R	8977040	3R_8977040_SNP [dm3] 3R_13151318_SNP [dm6]	C	G	1.367e^-4	0.718	INTRON timeout & 2 others
3R	8977108	3R_8977108_DEL [dm3] 3R_13151386_DEL [dm6]	TTT	T	1.367e^-4	0.718	INTRON timeout & 2 others
3R	7958406	3R_7958406_SNP [dm3] 3R_12132684_SNP [dm6]	G	C	1.375e^-4	0.718	INTERGENIC
3R	19000455	3R_19000455_SNP [dm3] 3R_23174733_SNP [dm6]	T	A	1.375e^-4	0.718	UTR_5_PRIME Irk1 INTRON Irk1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15742256	3L_15742256_SNP [dm3] 3L_15749156_SNP [dm6]	G	T	1.394e^-4	0.718	DOWNSTREAM CR45240 INTERGENIC
X	16147750	X_16147750_SNP [dm3] X_16253717_SNP [dm6]	T	C	1.395e^-4	0.718	UPSTREAM snRNA:U2:14B DOWNSTREAM snRNA:U5:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	10214942	2R_10214942_SNP [dm3] 2R_14327437_SNP [dm6]	A	C	1.396e^-4	0.718	INTRON Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9719424	2L_9719424_SNP [dm3] 2L_9719424_SNP [dm6]	T	A	1.401e^-4	0.718	INTRON Nckx30C
2L	5904050	2L_5904050_SNP [dm3] 2L_5904050_SNP [dm6]	T	C	1.401e^-4	0.718	NON_SYNONYMOUS_CODING CG9021 DOWNSTREAM CR43808	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	16114106	2L_16114106_SNP [dm3] 2L_16114106_SNP [dm6]	G	A	1.404e^-4	0.718	INTERGENIC
3R	25051361	3R_25051361_SNP [dm3] 3R_29225639_SNP [dm6]	C	T	1.412e^-4	0.718	SYNONYMOUS_CODING Brd8 DOWNSTREAM CG14507	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19373201	2R_19373201_SNP [dm3] 2R_23485678_SNP [dm6]	C	T	1.415e^-4	0.718	INTRON CG43795
3R	8955626	3R_8955626_SNP [dm3] 3R_13129904_SNP [dm6]	G	A	1.426e^-4	0.718	INTRON timeout & 1 other	TF binding site BDTNP1_TFBS_da
3L	9393924	3L_9393924_SNP [dm3] 3L_9400824_SNP [dm6]	T	C	1.433e^-4	0.718	NON_SYNONYMOUS_CODING eIF-4E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2L	5935303	2L_5935303_SNP [dm3] 2L_5935303_SNP [dm6]	G	T	1.437e^-4	0.718	INTRON dsf
2L	6173700	2L_6173700_SNP [dm3] 2L_6173700_SNP [dm6]	G	T	1.446e^-4	0.718	INTERGENIC
3R	21888950	3R_21888950_SNP [dm3] 3R_26063228_SNP [dm6]	C	T	1.450e^-4	0.718	UPSTREAM CG14551 INTERGENIC
3L	9982765	3L_9982765_SNP [dm3] 3L_9989665_SNP [dm6]	T	G	1.452e^-4	0.718	INTRON dpr6
2R	11227658	2R_11227658_SNP [dm3] 2R_15340153_SNP [dm6]	T	C	1.453e^-4	0.718	UPSTREAM unc-5 DOWNSTREAM Hr51 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_zfh1
3R	9733522	3R_9733522_SNP [dm3] 3R_13907800_SNP [dm6]	A	G	1.460e^-4	0.718	INTERGENIC
2L	5417849	2L_5417849_SNP [dm3] 2L_5417849_SNP [dm6]	C	T	1.462e^-4	0.718	INTERGENIC
3L	22510796	3L_22510796_SNP [dm3] 3L_22517696_SNP [dm6]	C	T	1.466e^-4	0.718	DOWNSTREAM mir-957 INTERGENIC
X	19942473	X_19942473_SNP [dm3] X_20048440_SNP [dm6]	G	A	1.469e^-4	0.718	INTRON Dop2R
2R	9355275	2R_9355275_MNP [dm3] 2R_13467770_MNP [dm6]	GAT	ACG	1.469e^-4	0.718	INTRON arr
3R	8928183	3R_8928183_SNP [dm3] 3R_13102461_SNP [dm6]	G	T	1.471e^-4	0.718	INTRON timeout
3L	4110782	3L_4110782_SNP [dm3] 3L_4110782_SNP [dm6]	C	G	1.474e^-4	0.718	SYNONYMOUS_CODING Ack	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	5830063	X_5830063_SNP [dm3] X_5936030_SNP [dm6]	C	T	1.475e^-4	0.718	INTRON CG3726
2R	11227669	2R_11227669_SNP [dm3] 2R_15340164_SNP [dm6]	G	T	1.477e^-4	0.718	UPSTREAM unc-5 DOWNSTREAM Hr51 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_zfh1
X	5581305	X_5581305_SNP [dm3] X_5687272_SNP [dm6]	G	A	1.478e^-4	0.718	SYNONYMOUS_CODING CG3160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	15363285	3R_15363285_SNP [dm3] 3R_19537563_SNP [dm6]	C	G	1.485e^-4	0.718	INTRON Dys
3R	18808666	3R_18808666_SNP [dm3] 3R_22982944_SNP [dm6]	G	C	1.495e^-4	0.718	INTRON Nha2
2L	17387290	2L_17387290_SNP [dm3] 2L_17387290_SNP [dm6]	T	G	1.498e^-4	0.718	INTRON CLIP-190
3L	13607516	3L_13607516_SNP [dm3] 3L_13614416_SNP [dm6]	C	G	1.499e^-4	0.718	INTRON bru-3
3R	20795584	3R_20795584_SNP [dm3] 3R_24969862_SNP [dm6]	A	T	1.500e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	2852472	2L_2852472_SNP [dm3] 2L_2852472_SNP [dm6]	G	A	1.504e^-4	0.718	INTRON CG3104
3R	7730304	3R_7730304_SNP [dm3] 3R_11904582_SNP [dm6]	C	G	1.506e^-4	0.718	INTRON Cad87A	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	8943566	3R_8943566_SNP [dm3] 3R_13117844_SNP [dm6]	T	A	1.519e^-4	0.718	INTRON timeout
2L	3786670	2L_3786670_SNP [dm3] 2L_3786670_SNP [dm6]	C	T	1.519e^-4	0.718	UPSTREAM CG3921 DOWNSTREAM CG31958 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
2R	18436629	2R_18436629_INS [dm3] 2R_22549124_INS [dm6]	C	CCCCACTCC	1.524e^-4	0.718	UPSTREAM CG6018 INTRON px
3R	2470880	3R_2470880_SNP [dm3] 3R_6645158_SNP [dm6]	A	G	1.530e^-4	0.718	UPSTREAM CG1315 INTERGENIC	TF binding site mE1_TFBS_HSA
X	16417941	X_16417941_SNP [dm3] X_16523908_SNP [dm6]	C	T	1.537e^-4	0.718	SYNONYMOUS_CODING Cnx14D INTRON para
2R	19671186	2R_19671186_SNP [dm3] 2R_23783663_SNP [dm6]	T	G	1.542e^-4	0.718	INTRON CG9850
3R	10299504	3R_10299504_SNP [dm3] 3R_14473782_SNP [dm6]	A	G	1.549e^-4	0.718	INTRON cv-c	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17907428	3R_17907428_SNP [dm3] 3R_22081706_SNP [dm6]	C	G	1.551e^-4	0.718	INTRON CG13408
3L	4880569	3L_4880569_SNP [dm3] 3L_4880569_SNP [dm6]	G	A	1.559e^-4	0.718	INTRON CG17150
3R	8976179	3R_8976179_SNP [dm3] 3R_13150457_SNP [dm6]	C	G	1.566e^-4	0.718	INTRON timeout & 2 others	TF binding site BDTNP1_TFBS_twi
3L	4021975	3L_4021975_SNP [dm3] 3L_4021975_SNP [dm6]	G	A	1.570e^-4	0.718	NON_SYNONYMOUS_CODING Mul1 DOWNSTREAM fd64A & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	9017556	3R_9017556_SNP [dm3] 3R_13191834_SNP [dm6]	T	A	1.575e^-4	0.718	INTRON CG8141	TF binding site BDTNP1_TFBS_twi
2L	5417767	2L_5417767_SNP [dm3] 2L_5417767_SNP [dm6]	A	G	1.578e^-4	0.718	INTERGENIC
2L	956507	2L_956507_SNP [dm3] 2L_956507_SNP [dm6]	T	A	1.579e^-4	0.718	SYNONYMOUS_CODING CG4341
2L	6816800	2L_6816800_SNP [dm3] 2L_6816800_SNP [dm6]	A	G	1.581e^-4	0.718	INTERGENIC
2L	6599989	2L_6599989_SNP [dm3] 2L_6599989_SNP [dm6]	A	T	1.585e^-4	0.718	INTRON CG11319
3R	5824875	3R_5824875_SNP [dm3] 3R_9999153_SNP [dm6]	C	G	1.586e^-4	0.718	NON_SYNONYMOUS_CODING Spn85F DOWNSTREAM CG5359	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18047857	X_18047857_SNP [dm3] X_18153824_SNP [dm6]	C	A	1.591e^-4	0.718	INTERGENIC
3R	17569064	3R_17569064_SNP [dm3] 3R_21743342_SNP [dm6]	A	G	1.592e^-4	0.718	SYNONYMOUS_CODING CG5849 UTR_3_PRIME CG5849	TF binding site mE1_TFBS_sens
3L	3911964	3L_3911964_SNP [dm3] 3L_3911964_SNP [dm6]	A	T	1.594e^-4	0.718	INTRON Eip63F-1
2L	14249524	2L_14249524_SNP [dm3] 2L_14249524_SNP [dm6]	A	G	1.596e^-4	0.718	INTERGENIC
3L	9975902	3L_9975902_SNP [dm3] 3L_9982802_SNP [dm6]	G	A	1.597e^-4	0.718	INTRON dpr6
X	6535181	X_6535181_SNP [dm3] X_6641148_SNP [dm6]	A	T	1.599e^-4	0.718	INTRON pigs
3R	18955731	3R_18955731_SNP [dm3] 3R_23130009_SNP [dm6]	T	A	1.601e^-4	0.718	INTRON hh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	3568863	3R_3568863_SNP [dm3] 3R_7743141_SNP [dm6]	T	A	1.607e^-4	0.718	INTERGENIC
3R	15341085	3R_15341085_SNP [dm3] 3R_19515363_SNP [dm6]	G	T	1.623e^-4	0.718	INTRON Dys
3R	1583916	3R_1583916_SNP [dm3] 3R_5758194_SNP [dm6]	A	G	1.624e^-4	0.718	NON_SYNONYMOUS_CODING Sec8 DOWNSTREAM CG2082	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2995837	2L_2995837_SNP [dm3] 2L_2995837_SNP [dm6]	C	T	1.625e^-4	0.718	SYNONYMOUS_CODING CG3558	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13723880	2R_13723880_SNP [dm3] 2R_17836375_SNP [dm6]	A	G	1.627e^-4	0.718	INTRON grh	TF binding site mE1_TFBS_cad
3L	12966201	3L_12966201_SNP [dm3] 3L_12973101_SNP [dm6]	C	A	1.630e^-4	0.718	SYNONYMOUS_CODING CG10749 UPSTREAM CG10748
X	3340904	X_3340904_SNP [dm3] X_3446871_SNP [dm6]	T	C	1.647e^-4	0.718	INTRON CR44999 & 1 other
3L	1556238	3L_1556238_SNP [dm3] 3L_1556238_SNP [dm6]	A	T	1.653e^-4	0.718	DOWNSTREAM Cct2 INTRON CG12099	TF binding site mE1_TFBS_cad
2L	17237125	2L_17237125_SNP [dm3] 2L_17237125_SNP [dm6]	C	T	1.654e^-4	0.718	INTRON beat-IIIc
2L	22436687	2L_22436687_SNP [dm3] 2L_22543955_SNP [dm6]	A	T	1.657e^-4	0.718	INTRON CG17490
3R	20795816	3R_20795816_SNP [dm3] 3R_24970094_SNP [dm6]	G	A	1.670e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8929711	3R_8929711_DEL [dm3] 3R_13103989_DEL [dm6]	GTAG	G	1.670e^-4	0.718	INTRON timeout
X	1616364	X_1616364_SNP [dm3] X_1722331_SNP [dm6]	C	G	1.672e^-4	0.718	INTERGENIC
2L	17255667	2L_17255667_SNP [dm3] 2L_17255667_SNP [dm6]	C	A	1.675e^-4	0.718	INTRON beat-IIIc
3R	9017377	3R_9017377_SNP [dm3] 3R_13191655_SNP [dm6]	T	C	1.688e^-4	0.718	START_GAINED CG8141 UTR_5_PRIME CG8141	TF binding site BDTNP1_TFBS_twi
3R	8071277	3R_8071277_SNP [dm3] 3R_12245555_SNP [dm6]	A	G	1.688e^-4	0.718	DOWNSTREAM CR45582 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	8963056	3L_8963056_SNP [dm3] 3L_8969956_SNP [dm6]	A	G	1.689e^-4	0.718	SYNONYMOUS_CODING CG5026	TF binding site mE1_TFBS_chinmo
3R	17823564	3R_17823564_SNP [dm3] 3R_21997842_SNP [dm6]	T	A	1.689e^-4	0.718	INTRON Eip93F
3R	1586675	3R_1586675_SNP [dm3] 3R_5760953_SNP [dm6]	C	T	1.691e^-4	0.718	SYNONYMOUS_CODING CG2082 DOWNSTREAM CG2082
2R	16908728	2R_16908728_SNP [dm3] 2R_21021223_SNP [dm6]	G	A	1.691e^-4	0.718	SYNONYMOUS_CODING RIC-3
3L	2043687	3L_2043687_SNP [dm3] 3L_2043687_SNP [dm6]	T	A	1.692e^-4	0.718	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16351529	3R_16351529_SNP [dm3] 3R_20525807_SNP [dm6]	A	G	1.692e^-4	0.718	INTERGENIC
3R	16351604	3R_16351604_SNP [dm3] 3R_20525882_SNP [dm6]	A	T	1.692e^-4	0.718	INTERGENIC
X	2040741	X_2040741_DEL [dm3] X_2146708_DEL [dm6]	ACAAAGGTTATTGATTATCA...	A	1.694e^-4	0.718	INTRON Pgd	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	8937834	3R_8937834_DEL [dm3] 3R_13112112_DEL [dm6]	TT	T	1.697e^-4	0.718	INTRON timeout
3L	3204296	3L_3204296_SNP [dm3] 3L_3204296_SNP [dm6]	A	G	1.700e^-4	0.718	SYNONYMOUS_CODING CG33159 DOWNSTREAM CG32277 INTRON gry	TF binding site mE1_TFBS_cad
3L	9875236	3L_9875236_DEL [dm3] 3L_9882136_DEL [dm6]	TT	T	1.702e^-4	0.718	INTRON CG34382	TF binding site mE1_TFBS_chinmo
2L	7749039	2L_7749039_SNP [dm3] 2L_7749039_SNP [dm6]	A	T	1.702e^-4	0.718	INTERGENIC
3R	8680675	3R_8680675_INS [dm3] 3R_12854953_INS [dm6]	C	CACCCGAAAG	1.704e^-4	0.718	DOWNSTREAM CG10126 INTERGENIC	insulator Insulator_Class_II.mE01
3R	8935473	3R_8935473_SNP [dm3] 3R_13109751_SNP [dm6]	G	A	1.715e^-4	0.718	INTRON timeout
3R	4773913	3R_4773913_SNP [dm3] 3R_8948191_SNP [dm6]	C	A	1.717e^-4	0.718	INTERGENIC
2R	16124235	2R_16124235_SNP [dm3] 2R_20236730_SNP [dm6]	C	T	1.726e^-4	0.718	SYNONYMOUS_CODING CG11099 DOWNSTREAM CG44625
2L	5509295	2L_5509295_SNP [dm3] 2L_5509295_SNP [dm6]	T	A	1.728e^-4	0.718	INTERGENIC
3R	8964946	3R_8964946_SNP [dm3] 3R_13139224_SNP [dm6]	A	T	1.730e^-4	0.718	INTRON timeout & 2 others
3R	8043694	3R_8043694_SNP [dm3] 3R_12217972_SNP [dm6]	G	C	1.750e^-4	0.718	NON_SYNONYMOUS_CODING CG4848	TF binding site mE1_TFBS_cad
3L	12546152	3L_12546152_SNP [dm3] 3L_12553052_SNP [dm6]	T	A	1.751e^-4	0.718	INTRON sowah
X	19368171	X_19368171_DEL [dm3] X_19474138_DEL [dm6]	AAATATG	A	1.754e^-4	0.718	UPSTREAM CG12200 DOWNSTREAM CG32533 INTERGENIC	TF binding site mE1_TFBS_cad
2L	21187664	2L_21187664_SNP [dm3] 2L_21187664_SNP [dm6]	G	A	1.755e^-4	0.718	INTRON Ret
X	14545407	X_14545407_SNP [dm3] X_14651374_SNP [dm6]	C	G	1.757e^-4	0.718	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14958662	3L_14958662_SNP [dm3] 3L_14965562_SNP [dm6]	T	A	1.758e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	20724670	X_20724670_SNP [dm3] X_20853643_SNP [dm6]	G	T	1.761e^-4	0.718	INTRON shakB
2L	6936501	2L_6936501_SNP [dm3] 2L_6936501_SNP [dm6]	C	T	1.764e^-4	0.718	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19671178	2R_19671178_SNP [dm3] 2R_23783655_SNP [dm6]	G	A	1.770e^-4	0.718	INTRON CG9850
3R	21657604	3R_21657604_SNP [dm3] 3R_25831882_SNP [dm6]	C	T	1.771e^-4	0.718	UTR_5_PRIME Mst57Da UPSTREAM Mst57Db & 1 other
2R	10461982	2R_10461982_SNP [dm3] 2R_14574477_SNP [dm6]	T	A	1.777e^-4	0.718	INTRON ttv & 1 other	TF binding site BDTNP1_TFBS_dl
2R	16363104	2R_16363104_SNP [dm3] 2R_20475599_SNP [dm6]	C	T	1.777e^-4	0.718	INTRON CG12484
3R	4844180	3R_4844180_INS [dm3] 3R_9018458_INS [dm6]	G	GCTGCTG	1.779e^-4	0.718	CODON_INSERTION tgo	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	1323435	2L_1323435_SNP [dm3] 2L_1323435_SNP [dm6]	T	C	1.783e^-4	0.718	INTERGENIC
3L	1502286	3L_1502286_SNP [dm3] 3L_1502286_SNP [dm6]	C	A	1.785e^-4	0.718	UPSTREAM Psa DOWNSTREAM cue INTRON pUf68	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	18808665	3R_18808665_SNP [dm3] 3R_22982943_SNP [dm6]	G	A	1.794e^-4	0.718	INTRON Nha2
3R	8930555	3R_8930555_SNP [dm3] 3R_13104833_SNP [dm6]	G	A	1.796e^-4	0.718	INTRON timeout
3R	3568854	3R_3568854_SNP [dm3] 3R_7743132_SNP [dm6]	C	G	1.797e^-4	0.718	INTERGENIC
2L	5435841	2L_5435841_SNP [dm3] 2L_5435841_SNP [dm6]	A	G	1.798e^-4	0.718	EXON CR31647
3R	9095778	3R_9095778_SNP [dm3] 3R_13270056_SNP [dm6]	T	A	1.800e^-4	0.718	DOWNSTREAM Su_var_3-7 INTRON CG8449
3L	8957870	3L_8957870_DEL [dm3] 3L_8964770_DEL [dm6]	TT	T	1.803e^-4	0.718	UPSTREAM CG5660 DOWNSTREAM CG5653 INTERGENIC
2L	11699702	2L_11699702_SNP [dm3] 2L_11699702_SNP [dm6]	G	T	1.804e^-4	0.718	INTERGENIC
2R	14599303	2R_14599303_SNP [dm3] 2R_18711798_SNP [dm6]	C	T	1.805e^-4	0.718	UPSTREAM CG15087 EXON pncr016:2R
3R	8946785	3R_8946785_SNP [dm3] 3R_13121063_SNP [dm6]	C	T	1.812e^-4	0.718	DOWNSTREAM 2mit INTRON timeout
3L	4388129	3L_4388129_SNP [dm3] 3L_4388129_SNP [dm6]	A	C	1.813e^-4	0.718	INTRON slow
3L	9100618	3L_9100618_SNP [dm3] 3L_9107518_SNP [dm6]	A	T	1.818e^-4	0.718	INTRON bol
2R	15782060	2R_15782060_SNP [dm3] 2R_19894555_SNP [dm6]	A	G	1.825e^-4	0.718	INTERGENIC
3R	8519201	3R_8519201_SNP [dm3] 3R_12693479_SNP [dm6]	A	G	1.832e^-4	0.718	SYNONYMOUS_CODING Arp1 UPSTREAM CG31347 DOWNSTREAM CG14391	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2176917	X_2176917_SNP [dm3] X_2282884_SNP [dm6]	C	G	1.832e^-4	0.718	INTRON CG2865	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	5985111	3L_5985111_SNP [dm3] 3L_5992011_SNP [dm6]	C	T	1.834e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	2044749	3L_2044749_SNP [dm3] 3L_2044749_SNP [dm6]	A	G	1.837e^-4	0.718	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	2086116	X_2086116_SNP [dm3] X_2192083_SNP [dm6]	A	C	1.837e^-4	0.718	UTR_3_PRIME CG14053 INTRON Mct1	TF binding site mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
2L	16594245	2L_16594245_SNP [dm3] 2L_16594245_SNP [dm6]	T	A	1.846e^-4	0.718	INTRON CG42389
3L	9100635	3L_9100635_SNP [dm3] 3L_9107535_SNP [dm6]	A	T	1.846e^-4	0.718	INTRON bol
3R	8061354	3R_8061354_SNP [dm3] 3R_12235632_SNP [dm6]	G	C	1.861e^-4	0.718	NON_SYNONYMOUS_CODING Cyp313a2 UPSTREAM Cyp313a5
3R	17904448	3R_17904448_SNP [dm3] 3R_22078726_SNP [dm6]	G	T	1.863e^-4	0.718	UTR_3_PRIME how DOWNSTREAM how	TF binding site mE1_TFBS_kn
3L	12984082	3L_12984082_SNP [dm3] 3L_12990982_SNP [dm6]	C	G	1.868e^-4	0.718	INTERGENIC
2L	12137435	2L_12137435_SNP [dm3] 2L_12137435_SNP [dm6]	G	C	1.875e^-4	0.718	UPSTREAM Gr33a INTERGENIC
3R	8363828	3R_8363828_SNP [dm3] 3R_12538106_SNP [dm6]	C	G	1.875e^-4	0.718	INTRON Octbeta3R
2L	5961013	2L_5961013_SNP [dm3] 2L_5961013_SNP [dm6]	A	C	1.877e^-4	0.718	UPSTREAM Vm26Aa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	17264018	2R_17264018_SNP [dm3] 2R_21376513_SNP [dm6]	T	G	1.880e^-4	0.718	INTRON cv-2
3R	26189624	3R_26189624_SNP [dm3] 3R_30363902_SNP [dm6]	T	A	1.886e^-4	0.718	UTR_3_PRIME hdc
X	6431089	X_6431089_SNP [dm3] X_6537056_SNP [dm6]	C	T	1.890e^-4	0.718	INTRON dx	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	9017689	3R_9017689_SNP [dm3] 3R_13191967_SNP [dm6]	A	G	1.893e^-4	0.718	NON_SYNONYMOUS_CODING CG8141
3L	9100627	3L_9100627_SNP [dm3] 3L_9107527_SNP [dm6]	T	G	1.909e^-4	0.718	INTRON bol
3L	2527828	3L_2527828_SNP [dm3] 3L_2527828_SNP [dm6]	G	T	1.912e^-4	0.718	UPSTREAM CG32295 INTRON Spn
3R	23636288	3R_23636288_SNP [dm3] 3R_27810566_SNP [dm6]	T	C	1.914e^-4	0.718	INTRON CG34353	TF binding site mE1_TFBS_chinmo
2L	6374275	2L_6374275_SNP [dm3] 2L_6374275_SNP [dm6]	A	C	1.926e^-4	0.718	SYNONYMOUS_CODING slam	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9687975	3R_9687975_SNP [dm3] 3R_13862253_SNP [dm6]	C	A	1.927e^-4	0.718	INTERGENIC
X	20724752	X_20724752_DEL [dm3] X_20853725_DEL [dm6]	AT	A	1.928e^-4	0.718	INTRON shakB
2R	16055749	2R_16055749_SNP [dm3] 2R_20168244_SNP [dm6]	T	C	1.933e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16055751	2R_16055751_SNP [dm3] 2R_20168246_SNP [dm6]	G	A	1.933e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4146106	3L_4146106_DEL [dm3] 3L_4146106_DEL [dm6]	ATTTGTTTTGC...	A	1.935e^-4	0.718	DOWNSTREAM CG32260 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	9018471	3R_9018471_SNP [dm3] 3R_13192749_SNP [dm6]	A	G	1.935e^-4	0.718	DOWNSTREAM CG8141 INTERGENIC
X	11273950	X_11273950_INS [dm3] X_11379917_INS [dm6]	T	TTT	1.937e^-4	0.718	INTRON dlg1
3L	9207660	3L_9207660_SNP [dm3] 3L_9214560_SNP [dm6]	A	T	1.938e^-4	0.718	INTRON CG4476
2L	14114839	2L_14114839_SNP [dm3] 2L_14114839_SNP [dm6]	C	T	1.939e^-4	0.718	INTERGENIC
3R	21888984	3R_21888984_SNP [dm3] 3R_26063262_SNP [dm6]	G	T	1.939e^-4	0.718	UPSTREAM CG14551 INTERGENIC
3R	6850533	3R_6850533_SNP [dm3] 3R_11024811_SNP [dm6]	A	T	1.940e^-4	0.718	INTRON CG34114
2R	10505212	2R_10505212_SNP [dm3] 2R_14617707_SNP [dm6]	C	T	1.949e^-4	0.718	NON_SYNONYMOUS_CODING Su_var_2-HP2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	23452246	3R_23452246_INS [dm3] 3R_27626524_INS [dm6]	A	AC	1.953e^-4	0.718	UPSTREAM CG5612 INTRON Tusp
3R	26161028	3R_26161028_SNP [dm3] 3R_30335306_SNP [dm6]	C	T	1.953e^-4	0.718	INTRON hdc
3R	15335935	3R_15335935_SNP [dm3] 3R_19510213_SNP [dm6]	T	G	1.958e^-4	0.718	INTRON Dys
3R	15331033	3R_15331033_SNP [dm3] 3R_19505311_SNP [dm6]	G	T	1.959e^-4	0.718	SYNONYMOUS_CODING Dys INTRON Dys	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9926663	2L_9926663_SNP [dm3] 2L_9926663_SNP [dm6]	G	C	1.960e^-4	0.718	SYNONYMOUS_CODING CG42366	TF binding site mE1_TFBS_cad
3L	6165439	3L_6165439_SNP [dm3] 3L_6172339_SNP [dm6]	A	G	1.961e^-4	0.718	INTRON CG10289	TF binding site mE1_TFBS_cad
3R	15331036	3R_15331036_SNP [dm3] 3R_19505314_SNP [dm6]	G	A	1.962e^-4	0.718	SYNONYMOUS_CODING Dys INTRON Dys	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8944714	3R_8944714_SNP [dm3] 3R_13118992_SNP [dm6]	T	G	1.974e^-4	0.718	INTRON timeout
3L	2013861	3L_2013861_SNP [dm3] 3L_2013861_SNP [dm6]	A	G	1.976e^-4	0.718	INTERGENIC
3L	10462468	3L_10462468_SNP [dm3] 3L_10469368_SNP [dm6]	C	A	1.980e^-4	0.718	DOWNSTREAM S-Lap3 INTERGENIC
3L	3607252	3L_3607252_SNP [dm3] 3L_3607252_SNP [dm6]	T	C	1.983e^-4	0.718	INTRON Eip63E	TF binding site mE1_TFBS_zfh1
3L	6875338	3L_6875338_SNP [dm3] 3L_6882238_SNP [dm6]	A	G	1.989e^-4	0.718	INTERGENIC
3R	3281894	3R_3281894_SNP [dm3] 3R_7456172_SNP [dm6]	C	T	1.990e^-4	0.718	INTERGENIC
2L	6859812	2L_6859812_SNP [dm3] 2L_6859812_SNP [dm6]	C	G	1.993e^-4	0.718	SYNONYMOUS_CODING l_2_k09022	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17177495	X_17177495_SNP [dm3] X_17283462_SNP [dm6]	A	G	1.994e^-4	0.718	UPSTREAM CG8664 DOWNSTREAM CG8661 INTRON CG5445
X	21157502	X_21157502_DEL [dm3] X_21286475_DEL [dm6]	TA	T	1.996e^-4	0.718	INTRON CG1494
3R	8363754	3R_8363754_SNP [dm3] 3R_12538032_SNP [dm6]	T	A	1.998e^-4	0.718	INTRON Octbeta3R
3R	18075673	3R_18075673_SNP [dm3] 3R_22249951_SNP [dm6]	T	C	2.002e^-4	0.718	INTRON SKIP
X	5161561	X_5161561_SNP [dm3] X_5267528_SNP [dm6]	T	A	2.005e^-4	0.718	INTERGENIC
3L	1502145	3L_1502145_SNP [dm3] 3L_1502145_SNP [dm6]	G	A	2.011e^-4	0.718	UPSTREAM Psa INTRON pUf68	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	6370525	2L_6370525_SNP [dm3] 2L_6370525_SNP [dm6]	C	T	2.012e^-4	0.718	DOWNSTREAM CG9505 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	5804460	3R_5804460_SNP [dm3] 3R_9978738_SNP [dm6]	T	A	2.017e^-4	0.718	INTRON Glut4EF	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	18559286	3L_18559286_SNP [dm3] 3L_18566186_SNP [dm6]	A	T	2.019e^-4	0.718	INTRON AstC-R1
3R	14448321	3R_14448321_SNP [dm3] 3R_18622599_SNP [dm6]	T	A	2.021e^-4	0.718	INTRON qin	TF binding site mE1_TFBS_inv
3R	26095290	3R_26095290_SNP [dm3] 3R_30269568_SNP [dm6]	C	T	2.027e^-4	0.718	INTERGENIC
2R	17953839	2R_17953839_SNP [dm3] 2R_22066334_SNP [dm6]	C	T	2.031e^-4	0.718	UPSTREAM Snp & 1 other INTRON Snp	TF binding site BDTNP1_TFBS_twi
3R	4692029	3R_4692029_SNP [dm3] 3R_8866307_SNP [dm6]	T	C	2.036e^-4	0.718	INTRON pyd
3R	12501602	3R_12501602_SNP [dm3] 3R_16675880_SNP [dm6]	C	T	2.039e^-4	0.718	INTRON Ubx
2R	17952735	2R_17952735_INS [dm3] 2R_22065230_INS [dm6]	A	AA	2.042e^-4	0.718	INTRON Snp
3R	20976837	3R_20976837_SNP [dm3] 3R_25151115_SNP [dm6]	C	T	2.046e^-4	0.718	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26259637	3R_26259637_SNP [dm3] 3R_30433915_SNP [dm6]	T	A	2.047e^-4	0.718	INTRON CG15534
3R	23924131	3R_23924131_SNP [dm3] 3R_28098409_SNP [dm6]	A	G	2.048e^-4	0.718	INTERGENIC
2L	5930526	2L_5930526_SNP [dm3] 2L_5930526_SNP [dm6]	C	A	2.051e^-4	0.718	INTRON dsf
2L	18117482	2L_18117482_DEL [dm3] 2L_18117482_DEL [dm6]	TTT	T	2.053e^-4	0.718	INTERGENIC
2L	14119681	2L_14119681_SNP [dm3] 2L_14119681_SNP [dm6]	C	T	2.054e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	7498696	3R_7498696_SNP [dm3] 3R_11672974_SNP [dm6]	C	G	2.054e^-4	0.718	NON_SYNONYMOUS_CODING CG42327	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6017357	2L_6017357_DEL [dm3] 2L_6017357_DEL [dm6]	CTCGC	C	2.060e^-4	0.718	INTRON H2.0
3L	1003101	3L_1003101_DEL [dm3] 3L_1003101_DEL [dm6]	ATGCTCTCCGTTCATTACAG...	A	2.062e^-4	0.718	INTRON trio
3R	5847114	3R_5847114_SNP [dm3] 3R_10021392_SNP [dm6]	G	A	2.063e^-4	0.718	UTR_5_PRIME Mical INTRON Mical	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4501968	2R_4501968_SNP [dm3] 2R_8614463_SNP [dm6]	G	A	2.065e^-4	0.718	UPSTREAM Cirl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_inv
3R	5873709	3R_5873709_SNP [dm3] 3R_10047987_SNP [dm6]	A	T	2.070e^-4	0.718	DOWNSTREAM mtTFB2 INTRON CG12811	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	11898104	3L_11898104_SNP [dm3] 3L_11905004_SNP [dm6]	A	C	2.073e^-4	0.718	INTRON CG44837
2L	5873021	2L_5873021_SNP [dm3] 2L_5873021_SNP [dm6]	A	T	2.074e^-4	0.718	INTRON rau
3L	8077363	3L_8077363_SNP [dm3] 3L_8084263_SNP [dm6]	C	G	2.077e^-4	0.718	INTRON Ect4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	8564459	3R_8564459_SNP [dm3] 3R_12738737_SNP [dm6]	A	G	2.082e^-4	0.718	UPSTREAM CG5724 INTERGENIC
3R	19776051	3R_19776051_SNP [dm3] 3R_23950329_SNP [dm6]	T	C	2.089e^-4	0.718	INTERGENIC
X	1616708	X_1616708_SNP [dm3] X_1722675_SNP [dm6]	G	T	2.090e^-4	0.718	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	23718803	3R_23718803_SNP [dm3] 3R_27893081_SNP [dm6]	G	A	2.091e^-4	0.718	INTRON CG34353
3R	17297115	3R_17297115_SNP [dm3] 3R_21471393_SNP [dm6]	A	G	2.101e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11011540	3L_11011540_SNP [dm3] 3L_11018440_SNP [dm6]	C	T	2.106e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	18394037	2R_18394037_SNP [dm3] 2R_22506532_SNP [dm6]	C	A	2.115e^-4	0.718	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15996432	3R_15996432_SNP [dm3] 3R_20170710_SNP [dm6]	T	C	2.139e^-4	0.718	INTRON CG5023
3R	22087545	3R_22087545_SNP [dm3] 3R_26261823_SNP [dm6]	T	C	2.144e^-4	0.718	UPSTREAM Ald & 1 other DOWNSTREAM CR44321 INTERGENIC
3R	21657622	3R_21657622_SNP [dm3] 3R_25831900_SNP [dm6]	A	G	2.148e^-4	0.718	UPSTREAM Mst57Db & 2 others INTERGENIC
3L	2040667	3L_2040667_SNP [dm3] 3L_2040667_SNP [dm6]	G	A	2.150e^-4	0.718	INTRON sls
3R	8935456	3R_8935456_DEL [dm3] 3R_13109734_DEL [dm6]	AGGT	A	2.152e^-4	0.718	INTRON timeout
3R	8935461	3R_8935461_DEL [dm3] 3R_13109739_DEL [dm6]	CGAAAGCA	C	2.152e^-4	0.718	INTRON timeout
3R	8935476	3R_8935476_INS [dm3] 3R_13109754_INS [dm6]	T	TTG	2.152e^-4	0.718	INTRON timeout
3R	16548535	3R_16548535_SNP [dm3] 3R_20722813_SNP [dm6]	T	C	2.154e^-4	0.718	INTERGENIC
3R	4690398	3R_4690398_SNP [dm3] 3R_8864676_SNP [dm6]	A	T	2.155e^-4	0.718	UPSTREAM pyd INTRON pyd
3R	8946646	3R_8946646_SNP [dm3] 3R_13120924_SNP [dm6]	T	C	2.155e^-4	0.718	INTRON timeout
3R	8935498	3R_8935498_DEL [dm3] 3R_13109776_DEL [dm6]	AA	A	2.157e^-4	0.718	INTRON timeout
3R	14182054	3R_14182054_SNP [dm3] 3R_18356332_SNP [dm6]	A	G	2.162e^-4	0.718	INTRON CG15803	TF binding site mE1_TFBS_chinmo
2R	1674333	2R_1674333_SNP [dm3] 2R_5786828_SNP [dm6]	A	G	2.168e^-4	0.718	INTERGENIC
2L	10830776	2L_10830776_SNP [dm3] 2L_10830776_SNP [dm6]	T	C	2.169e^-4	0.718	INTRON Nos
3L	11898119	3L_11898119_SNP [dm3] 3L_11905019_SNP [dm6]	C	T	2.181e^-4	0.718	INTRON CG44837
2L	21713785	2L_21713785_SNP [dm3] 2L_21713785_SNP [dm6]	A	C	2.185e^-4	0.718	INTRON CG31619
2R	4684800	2R_4684800_INS [dm3] 2R_8797295_INS [dm6]	T	TGTATGT	2.199e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11662923	2R_11662923_SNP [dm3] 2R_15775418_SNP [dm6]	G	A	2.201e^-4	0.718	SYNONYMOUS_CODING Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21465626	X_21465626_INS [dm3] X_21594599_INS [dm6]	G	GTACATACATATG...	2.202e^-4	0.718	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	25419429	3R_25419429_SNP [dm3] 3R_29593707_SNP [dm6]	C	A	2.203e^-4	0.718	SYNONYMOUS_CODING alph	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	17391650	2L_17391650_SNP [dm3] 2L_17391650_SNP [dm6]	A	T	2.203e^-4	0.718	INTRON CLIP-190
3R	22017918	3R_22017918_SNP [dm3] 3R_26192196_SNP [dm6]	G	A	2.209e^-4	0.718	UPSTREAM CG34129 INTERGENIC
X	10020753	X_10020753_INS [dm3] X_10126720_INS [dm6]	T	ACCACCAGCA	2.211e^-4	0.718	INTRON CR44894 & 1 other
2L	6936791	2L_6936791_SNP [dm3] 2L_6936791_SNP [dm6]	A	G	2.212e^-4	0.718	INTRON CG18304
3R	22987009	3R_22987009_SNP [dm3] 3R_27161287_SNP [dm6]	G	T	2.213e^-4	0.718	UTR_5_PRIME CG5909
2L	9186931	2L_9186931_SNP [dm3] 2L_9186931_SNP [dm6]	T	G	2.213e^-4	0.718	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21511835	3R_21511835_SNP [dm3] 3R_25686113_SNP [dm6]	G	A	2.215e^-4	0.718	INTRON CLS	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
3R	9017398	3R_9017398_SNP [dm3] 3R_13191676_SNP [dm6]	A	T	2.221e^-4	0.718	UTR_5_PRIME CG8141	TF binding site BDTNP1_TFBS_twi
3R	26303968	3R_26303968_SNP [dm3] 3R_30478246_SNP [dm6]	G	C	2.228e^-4	0.718	INTRON PH4alphaEFB & 1 other	TF binding site mE1_TFBS_sens
3R	23716640	3R_23716640_SNP [dm3] 3R_27890918_SNP [dm6]	A	G	2.238e^-4	0.718	INTRON CG34353
3L	22157569	3L_22157569_SNP [dm3] 3L_22164469_SNP [dm6]	G	C	2.246e^-4	0.718	INTRON olf413	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	7391959	2R_7391959_SNP [dm3] 2R_11504454_SNP [dm6]	T	A	2.250e^-4	0.718	INTRON inv
2L	5930519	2L_5930519_SNP [dm3] 2L_5930519_SNP [dm6]	C	A	2.250e^-4	0.718	INTRON dsf
2R	16055743	2R_16055743_SNP [dm3] 2R_20168238_SNP [dm6]	A	T	2.257e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20927571	3R_20927571_SNP [dm3] 3R_25101849_SNP [dm6]	A	G	2.259e^-4	0.718	UTR_3_PRIME CG33096 & 1 other UPSTREAM CG45095
2L	957044	2L_957044_SNP [dm3] 2L_957044_SNP [dm6]	T	C	2.272e^-4	0.718	SPLICE_SITE_REGION CG4341 INTRON CG4341
3L	12863390	3L_12863390_SNP [dm3] 3L_12870290_SNP [dm6]	A	T	2.272e^-4	0.718	INTERGENIC
X	11112726	X_11112726_SNP [dm3] X_11218693_SNP [dm6]	G	C	2.273e^-4	0.718	DOWNSTREAM CG44422 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9589917	2L_9589917_SNP [dm3] 2L_9589917_SNP [dm6]	C	G	2.273e^-4	0.718	NON_SYNONYMOUS_CODING CG3841	regulatory region REDfly_CRMs
3R	4542627	3R_4542627_SNP [dm3] 3R_8716905_SNP [dm6]	T	C	2.279e^-4	0.718	UTR_5_PRIME CG8116 INTRON Cks85A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	16360935	2R_16360935_SNP [dm3] 2R_20473430_SNP [dm6]	A	T	2.284e^-4	0.718	INTRON CG12484
2L	7223743	2L_7223743_SNP [dm3] 2L_7223743_SNP [dm6]	A	G	2.285e^-4	0.718	UPSTREAM ico DOWNSTREAM Ndae1 INTRON Ndae1	TF binding site mE1_TFBS_zfh1
3L	7109363	3L_7109363_SNP [dm3] 3L_7116263_SNP [dm6]	G	A	2.288e^-4	0.718	INTRON form3
2R	17366133	2R_17366133_SNP [dm3] 2R_21478628_SNP [dm6]	T	G	2.292e^-4	0.718	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
2R	6595012	2R_6595012_SNP [dm3] 2R_10707507_SNP [dm6]	T	C	2.305e^-4	0.718	SYNONYMOUS_CODING stan	TF binding site mE1_TFBS_cad
2L	9588447	2L_9588447_SNP [dm3] 2L_9588447_SNP [dm6]	A	G	2.309e^-4	0.718	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9101511	3R_9101511_DEL [dm3] 3R_13275789_DEL [dm6]	TT	T	2.311e^-4	0.718	INTERGENIC
3R	19151287	3R_19151287_SNP [dm3] 3R_23325565_SNP [dm6]	T	G	2.313e^-4	0.718	INTRON pnt
2L	12800498	2L_12800498_SNP [dm3] 2L_12800498_SNP [dm6]	G	T	2.323e^-4	0.718	INTERGENIC
3R	7730385	3R_7730385_SNP [dm3] 3R_11904663_SNP [dm6]	C	T	2.326e^-4	0.718	INTRON Cad87A
3L	3423314	3L_3423314_SNP [dm3] 3L_3423314_SNP [dm6]	T	C	2.328e^-4	0.718	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3423326	3L_3423326_SNP [dm3] 3L_3423326_SNP [dm6]	A	G	2.328e^-4	0.718	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8697871	3R_8697871_SNP [dm3] 3R_12872149_SNP [dm6]	T	G	2.330e^-4	0.718	INTERGENIC
3R	3568107	3R_3568107_SNP [dm3] 3R_7742385_SNP [dm6]	C	G	2.331e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8884427	3R_8884427_DEL [dm3] 3R_13058705_DEL [dm6]	AAGGGAAA	A	2.333e^-4	0.718	INTRON sim	TF binding site mE1_TFBS_Kr
3L	4651572	3L_4651572_SNP [dm3] 3L_4651572_SNP [dm6]	A	G	2.334e^-4	0.718	INTRON axo
3R	16498263	3R_16498263_SNP [dm3] 3R_20672541_SNP [dm6]	G	A	2.337e^-4	0.718	UTR_3_PRIME Cpr92F
3R	8939969	3R_8939969_SNP [dm3] 3R_13114247_SNP [dm6]	A	G	2.338e^-4	0.718	SPLICE_SITE_REGION timeout INTRON timeout
3L	22011473	3L_22011473_SNP [dm3] 3L_22018373_SNP [dm6]	T	A	2.339e^-4	0.718	INTERGENIC
3L	13107355	3L_13107355_SNP [dm3] 3L_13114255_SNP [dm6]	C	T	2.340e^-4	0.718	UPSTREAM trn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2R	9344047	2R_9344047_SNP [dm3] 2R_13456542_SNP [dm6]	A	T	2.344e^-4	0.718	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_cad
3R	21657867	3R_21657867_SNP [dm3] 3R_25832145_SNP [dm6]	T	A	2.345e^-4	0.718	UPSTREAM alpha4GT2 & 1 other INTERGENIC
3L	2013935	3L_2013935_SNP [dm3] 3L_2013935_SNP [dm6]	A	T	2.355e^-4	0.718	INTERGENIC
3L	17450027	3L_17450027_INS [dm3] 3L_17456927_INS [dm6]	A	ATGGCAAA	2.357e^-4	0.718	UTR_3_PRIME CG18265
2R	16374062	2R_16374062_INS [dm3] 2R_20486557_INS [dm6]	C	CC	2.359e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9017355	3R_9017355_SNP [dm3] 3R_13191633_SNP [dm6]	C	T	2.372e^-4	0.718	UTR_5_PRIME CG8141	TF binding site BDTNP1_TFBS_twi
3L	2045728	3L_2045728_SNP [dm3] 3L_2045728_SNP [dm6]	G	C	2.385e^-4	0.718	SYNONYMOUS_CODING sls INTRON sls
3R	25074433	3R_25074433_DEL [dm3] 3R_29248711_DEL [dm6]	CTGA	C	2.391e^-4	0.718	UTR_5_PRIME SP1029 INTRON SP1029
3L	9207633	3L_9207633_SNP [dm3] 3L_9214533_SNP [dm6]	A	T	2.397e^-4	0.718	INTRON CG4476
2R	12167660	2R_12167660_SNP [dm3] 2R_16280155_SNP [dm6]	T	A	2.403e^-4	0.718	UTR_5_PRIME CG15704 UPSTREAM CG15705
2L	8259389	2L_8259389_SNP [dm3] 2L_8259389_SNP [dm6]	T	C	2.407e^-4	0.718	UTR_3_PRIME Btk29A UPSTREAM mir-2b-1 DOWNSTREAM Btk29A
3R	9016788	3R_9016788_SNP [dm3] 3R_13191066_SNP [dm6]	T	G	2.408e^-4	0.718	UPSTREAM CG8141 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14628113	2L_14628113_SNP [dm3] 2L_14628113_SNP [dm6]	T	G	2.414e^-4	0.718	INTRON osp	TF binding site mE1_TFBS_HSA
2R	8921200	2R_8921200_SNP [dm3] 2R_13033695_SNP [dm6]	C	G	2.424e^-4	0.718	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26600800	3R_26600800_SNP [dm3] 3R_30775078_SNP [dm6]	T	G	2.425e^-4	0.718	INTRON zfh1	TF binding site mE1_TFBS_cad
3L	21035374	3L_21035374_SNP [dm3] 3L_21042274_SNP [dm6]	T	C	2.427e^-4	0.718	INTRON siz
2L	9593939	2L_9593939_SNP [dm3] 2L_9593939_SNP [dm6]	A	G	2.429e^-4	0.718	INTERGENIC	regulatory region REDfly_CRMs
2L	6859478	2L_6859478_SNP [dm3] 2L_6859478_SNP [dm6]	T	C	2.432e^-4	0.718	SYNONYMOUS_CODING l_2_k09022	TF binding site mE1_TFBS_cad
3R	9008124	3R_9008124_SNP [dm3] 3R_13182402_SNP [dm6]	T	C	2.432e^-4	0.718	DOWNSTREAM CG8138 INTERGENIC
3L	3905147	3L_3905147_SNP [dm3] 3L_3905147_SNP [dm6]	T	A	2.436e^-4	0.718	UPSTREAM ida DOWNSTREAM Sc2 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11027813	X_11027813_SNP [dm3] X_11133780_SNP [dm6]	G	C	2.442e^-4	0.718	INTRON Klp10A	TF binding site mE1_TFBS_cad
3R	18266039	3R_18266039_SNP [dm3] 3R_22440317_SNP [dm6]	A	G	2.445e^-4	0.718	NON_SYNONYMOUS_CODING CG12499	TF binding site mE1_TFBS_cad
3R	5842615	3R_5842615_SNP [dm3] 3R_10016893_SNP [dm6]	T	C	2.446e^-4	0.718	INTRON Mical
3L	20850768	3L_20850768_SNP [dm3] 3L_20857668_SNP [dm6]	C	A	2.451e^-4	0.718	INTRON CG32432
3L	22530726	3L_22530726_SNP [dm3] 3L_22537626_SNP [dm6]	A	G	2.454e^-4	0.718	INTERGENIC
2L	12137439	2L_12137439_SNP [dm3] 2L_12137439_SNP [dm6]	G	T	2.458e^-4	0.718	UPSTREAM Gr33a INTERGENIC
2R	11227632	2R_11227632_SNP [dm3] 2R_15340127_SNP [dm6]	G	A	2.468e^-4	0.718	UPSTREAM unc-5 DOWNSTREAM Hr51 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_zfh1
3R	10821685	3R_10821685_DEL [dm3] 3R_14995963_DEL [dm6]	ACCGCACGGTGG...	A	2.469e^-4	0.718	INTERGENIC
3R	14383120	3R_14383120_SNP [dm3] 3R_18557398_SNP [dm6]	T	C	2.469e^-4	0.718	INTERGENIC
2R	20390010	2R_20390010_SNP [dm3] 2R_24502487_SNP [dm6]	G	C	2.472e^-4	0.718	UPSTREAM Prosalpha4T2 INTERGENIC
3R	8950409	3R_8950409_SNP [dm3] 3R_13124687_SNP [dm6]	G	T	2.478e^-4	0.718	UTR_3_PRIME 2mit INTRON timeout
3R	17015012	3R_17015012_SNP [dm3] 3R_21189290_SNP [dm6]	T	A	2.483e^-4	0.718	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	17015024	3R_17015024_SNP [dm3] 3R_21189302_SNP [dm6]	G	T	2.483e^-4	0.718	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	8944551	3R_8944551_SNP [dm3] 3R_13118829_SNP [dm6]	A	T	2.497e^-4	0.718	INTRON timeout
3R	8923821	3R_8923821_SNP [dm3] 3R_13098099_SNP [dm6]	C	T	2.501e^-4	0.718	INTRON timeout
3L	7147035	3L_7147035_SNP [dm3] 3L_7153935_SNP [dm6]	A	T	2.503e^-4	0.718	INTRON corn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1529485	3R_1529485_SNP [dm3] 3R_5703763_SNP [dm6]	A	T	2.506e^-4	0.718	INTRON plx	TF binding site BDTNP1_TFBS_prd
3R	26012772	3R_26012772_DEL [dm3] 3R_30187050_DEL [dm6]	AAGTA	A	2.506e^-4	0.718	INTRON CG9747
2R	2408859	2R_2408859_SNP [dm3] 2R_6521354_SNP [dm6]	A	T	2.508e^-4	0.718	INTRON jing
3L	10462464	3L_10462464_SNP [dm3] 3L_10469364_SNP [dm6]	G	A	2.514e^-4	0.718	DOWNSTREAM S-Lap3 INTERGENIC
2L	12137479	2L_12137479_SNP [dm3] 2L_12137479_SNP [dm6]	A	C	2.516e^-4	0.718	UPSTREAM Gr33a INTERGENIC
3L	22590782	3L_22590782_SNP [dm3] 3L_22597682_SNP [dm6]	T	A	2.517e^-4	0.718	INTRON CG14459
2L	3402400	2L_3402400_SNP [dm3] 2L_3402400_SNP [dm6]	C	A	2.521e^-4	0.718	INTERGENIC
2R	6595021	2R_6595021_SNP [dm3] 2R_10707516_SNP [dm6]	C	T	2.525e^-4	0.718	SYNONYMOUS_CODING stan	TF binding site mE1_TFBS_cad
3L	636663	3L_636663_SNP [dm3] 3L_636663_SNP [dm6]	C	T	2.529e^-4	0.718	DOWNSTREAM CR43423 EXON CR43334	regulatory region REDfly_CRMs
X	11857148	X_11857148_SNP [dm3] X_11963115_SNP [dm6]	T	A	2.542e^-4	0.718	INTRON cac
3L	22608058	3L_22608058_DEL [dm3] 3L_22614958_DEL [dm6]	GG	G	2.548e^-4	0.718	INTRON CG14459	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8282386	X_8282386_SNP [dm3] X_8388353_SNP [dm6]	A	G	2.548e^-4	0.718	SYNONYMOUS_CODING CG1387	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9024385	3R_9024385_SNP [dm3] 3R_13198663_SNP [dm6]	G	C	2.552e^-4	0.718	INTERGENIC
2L	22048507	2L_22048507_SNP [dm3] 2L_22048507_SNP [dm6]	G	C	2.554e^-4	0.718	INTERGENIC	transposable element FlyBase
3L	12556189	3L_12556189_SNP [dm3] 3L_12563089_SNP [dm6]	G	C	2.555e^-4	0.718	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	5847307	3R_5847307_SNP [dm3] 3R_10021585_SNP [dm6]	A	T	2.557e^-4	0.718	UPSTREAM Mical INTRON Mical	TF binding site mE1_TFBS_HSA
2L	437276	2L_437276_INS [dm3] 2L_437276_INS [dm6]	T	TTTGTTT	2.564e^-4	0.718	INTRON ex
2L	6174613	2L_6174613_SNP [dm3] 2L_6174613_SNP [dm6]	A	G	2.564e^-4	0.718	INTERGENIC
3L	2704319	3L_2704319_SNP [dm3] 3L_2704319_SNP [dm6]	T	C	2.565e^-4	0.718	INTRON Fife
3R	26095301	3R_26095301_SNP [dm3] 3R_30269579_SNP [dm6]	G	T	2.568e^-4	0.718	INTERGENIC
X	20724628	X_20724628_SNP [dm3] X_20853601_SNP [dm6]	A	G	2.569e^-4	0.718	INTRON shakB
3R	9291491	3R_9291491_SNP [dm3] 3R_13465769_SNP [dm6]	A	G	2.573e^-4	0.718	EXON CR17025	TF binding site BDTNP1_TFBS_dl
2L	14045631	2L_14045631_SNP [dm3] 2L_14045631_SNP [dm6]	G	A	2.574e^-4	0.718	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	9207656	3L_9207656_SNP [dm3] 3L_9214556_SNP [dm6]	C	A	2.575e^-4	0.718	INTRON CG4476
3L	636664	3L_636664_SNP [dm3] 3L_636664_SNP [dm6]	A	G	2.577e^-4	0.718	DOWNSTREAM CR43423 EXON CR43334	regulatory region REDfly_CRMs
3L	10582904	3L_10582904_SNP [dm3] 3L_10589804_SNP [dm6]	A	T	2.580e^-4	0.718	INTRON A2bp1
3L	3425535	3L_3425535_SNP [dm3] 3L_3425535_SNP [dm6]	T	G	2.584e^-4	0.718	UPSTREAM sty INTERGENIC
2L	3918062	2L_3918062_SNP [dm3] 2L_3918062_SNP [dm6]	T	C	2.585e^-4	0.718	SYNONYMOUS_CODING fred	TF binding site mE1_TFBS_sens
2R	19367951	2R_19367951_SNP [dm3] 2R_23480428_SNP [dm6]	A	G	2.587e^-4	0.718	INTRON CG43795
3R	23378992	3R_23378992_SNP [dm3] 3R_27553270_SNP [dm6]	C	T	2.592e^-4	0.718	INTRON Klp98A
3R	21784727	3R_21784727_SNP [dm3] 3R_25959005_SNP [dm6]	T	A	2.593e^-4	0.718	UPSTREAM CG14540 INTERGENIC
3L	12032493	3L_12032493_SNP [dm3] 3L_12039393_SNP [dm6]	T	C	2.593e^-4	0.718	INTRON rols	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10046671	2L_10046671_SNP [dm3] 2L_10046671_SNP [dm6]	C	T	2.605e^-4	0.718	INTERGENIC
2L	6493942	2L_6493942_SNP [dm3] 2L_6493942_SNP [dm6]	T	C	2.610e^-4	0.718	INTRON CG31638 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20724810	X_20724810_SNP [dm3] X_20853783_SNP [dm6]	A	T	2.618e^-4	0.718	INTRON shakB
2L	1346313	2L_1346313_SNP [dm3] 2L_1346313_SNP [dm6]	C	T	2.621e^-4	0.718	UPSTREAM CR45005 EXON CR45006
2R	11227601	2R_11227601_SNP [dm3] 2R_15340096_SNP [dm6]	G	T	2.627e^-4	0.718	UPSTREAM unc-5 DOWNSTREAM Hr51 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_zfh1
3L	11329759	3L_11329759_SNP [dm3] 3L_11336659_SNP [dm6]	T	A	2.635e^-4	0.718	INTERGENIC
2L	14101093	2L_14101093_SNP [dm3] 2L_14101093_SNP [dm6]	G	C	2.635e^-4	0.718	INTERGENIC
3L	20978569	3L_20978569_SNP [dm3] 3L_20985469_SNP [dm6]	G	T	2.635e^-4	0.718	INTERGENIC
2L	11631703	2L_11631703_SNP [dm3] 2L_11631703_SNP [dm6]	C	A	2.635e^-4	0.718	INTERGENIC
2L	4766129	2L_4766129_SNP [dm3] 2L_4766129_SNP [dm6]	G	A	2.641e^-4	0.718	INTRON CG15630
3L	9635077	3L_9635077_SNP [dm3] 3L_9641977_SNP [dm6]	A	T	2.652e^-4	0.718	DOWNSTREAM CG18180 INTRON fry
2L	22341251	2L_22341251_SNP [dm3] 2L_22341251_SNP [dm6]	A	T	2.667e^-4	0.718	INTRON CG17018 EXON CR43359
2L	8791191	2L_8791191_SNP [dm3] 2L_8791191_SNP [dm6]	A	T	2.670e^-4	0.718	INTERGENIC
3R	7757128	3R_7757128_SNP [dm3] 3R_11931406_SNP [dm6]	A	T	2.674e^-4	0.718	NON_SYNONYMOUS_CODING CG14731 INTRON Cad87A
3L	10461346	3L_10461346_SNP [dm3] 3L_10468246_SNP [dm6]	A	G	2.685e^-4	0.718	UTR_3_PRIME S-Lap3	TF binding site mE1_TFBS_cad
2R	11227622	2R_11227622_SNP [dm3] 2R_15340117_SNP [dm6]	T	C	2.687e^-4	0.718	UPSTREAM unc-5 DOWNSTREAM Hr51 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_zfh1
3R	21037446	3R_21037446_SNP [dm3] 3R_25211724_SNP [dm6]	C	A	2.687e^-4	0.718	SYNONYMOUS_CODING CG13654	TF binding site mE1_TFBS_cad
3R	15620127	3R_15620127_INS [dm3] 3R_19794405_INS [dm6]	A	AA	2.695e^-4	0.718	DOWNSTREAM bnl INTRON bnl
3R	8363723	3R_8363723_SNP [dm3] 3R_12538001_SNP [dm6]	T	G	2.699e^-4	0.718	INTRON Octbeta3R
3L	16463027	3L_16463027_SNP [dm3] 3L_16469927_SNP [dm6]	G	T	2.705e^-4	0.718	DOWNSTREAM aos INTRON CG33158
2L	3328331	2L_3328331_SNP [dm3] 2L_3328331_SNP [dm6]	G	A	2.706e^-4	0.718	INTRON CG33282
3R	25262014	3R_25262014_DEL [dm3] 3R_29436292_DEL [dm6]	TA	T	2.710e^-4	0.718	INTRON Ptp99A
X	4563499	X_4563499_SNP [dm3] X_4669466_SNP [dm6]	A	G	2.719e^-4	0.718	INTRON rap	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3328317	2L_3328317_SNP [dm3] 2L_3328317_SNP [dm6]	C	T	2.723e^-4	0.718	INTRON CG33282
3R	17014992	3R_17014992_SNP [dm3] 3R_21189270_SNP [dm6]	C	T	2.728e^-4	0.718	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	2069817	X_2069817_SNP [dm3] X_2175784_SNP [dm6]	A	T	2.731e^-4	0.718	UPSTREAM Cyp4d2 & 1 other DOWNSTREAM CR44690 EXON CR45479
3L	3419772	3L_3419772_SNP [dm3] 3L_3419772_SNP [dm6]	G	T	2.735e^-4	0.718	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	17177618	X_17177618_SNP [dm3] X_17283585_SNP [dm6]	A	C	2.744e^-4	0.718	UPSTREAM CG8664 DOWNSTREAM CG8661 INTRON CG5445
3R	19078967	3R_19078967_SNP [dm3] 3R_23253245_SNP [dm6]	A	G	2.749e^-4	0.718	SYNONYMOUS_CODING EloA
3L	10462865	3L_10462865_INS [dm3] 3L_10469765_INS [dm6]	T	TT	2.749e^-4	0.718	DOWNSTREAM S-Lap3 INTERGENIC
X	7472420	X_7472420_SNP [dm3] X_7578387_SNP [dm6]	A	G	2.753e^-4	0.718	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	14381941	X_14381941_SNP [dm3] X_14487908_SNP [dm6]	A	G	2.753e^-4	0.718	INTERGENIC
3R	8961368	3R_8961368_SNP [dm3] 3R_13135646_SNP [dm6]	G	C	2.755e^-4	0.718	INTRON timeout & 2 others
3R	17015045	3R_17015045_SNP [dm3] 3R_21189323_SNP [dm6]	A	G	2.756e^-4	0.718	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	14628271	2L_14628271_SNP [dm3] 2L_14628271_SNP [dm6]	A	G	2.763e^-4	0.718	INTRON osp	TF binding site mE1_TFBS_HSA
3L	12050503	3L_12050503_SNP [dm3] 3L_12057403_SNP [dm6]	C	T	2.765e^-4	0.718	UPSTREAM rols INTRON rols	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14328462	2L_14328462_SNP [dm3] 2L_14328462_SNP [dm6]	G	C	2.770e^-4	0.718	UTR_5_PRIME ms_2_34Fe DOWNSTREAM wb
3R	10372475	3R_10372475_SNP [dm3] 3R_14546753_SNP [dm6]	A	T	2.771e^-4	0.718	INTRON Pde6
3R	6987004	3R_6987004_SNP [dm3] 3R_11161282_SNP [dm6]	C	T	2.772e^-4	0.718	SYNONYMOUS_CODING CG4757
2L	14628384	2L_14628384_SNP [dm3] 2L_14628384_SNP [dm6]	C	T	2.780e^-4	0.718	INTRON osp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	8967667	3R_8967667_SNP [dm3] 3R_13141945_SNP [dm6]	A	G	2.781e^-4	0.718	INTRON timeout & 2 others
2R	18240209	2R_18240209_SNP [dm3] 2R_22352704_SNP [dm6]	G	A	2.781e^-4	0.718	INTRON Liprin-gamma
2L	7244005	2L_7244005_SNP [dm3] 2L_7244005_SNP [dm6]	A	C	2.791e^-4	0.718	INTRON Ndae1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	18129516	3L_18129516_SNP [dm3] 3L_18136416_SNP [dm6]	T	C	2.795e^-4	0.718	UPSTREAM CR44669 INTERGENIC
2L	12199316	2L_12199316_SNP [dm3] 2L_12199316_SNP [dm6]	C	T	2.798e^-4	0.718	INTRON aret
X	17176694	X_17176694_SNP [dm3] X_17282661_SNP [dm6]	C	A	2.809e^-4	0.718	SYNONYMOUS_CODING CG8664 UTR_5_PRIME CG5445	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3R	21896967	3R_21896967_SNP [dm3] 3R_26071245_SNP [dm6]	T	G	2.810e^-4	0.718	EXON CR44950
3L	10917052	3L_10917052_SNP [dm3] 3L_10923952_SNP [dm6]	T	C	2.815e^-4	0.718	INTERGENIC
2L	7726675	2L_7726675_SNP [dm3] 2L_7726675_SNP [dm6]	G	A	2.824e^-4	0.718	UPSTREAM CG13795 DOWNSTREAM CG13796 INTERGENIC
X	16350174	X_16350174_DEL [dm3] X_16456141_DEL [dm6]	TATGTGTGTGTGTAT...	T	2.828e^-4	0.718	UTR_3_PRIME para	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
3R	15335911	3R_15335911_INS [dm3] 3R_19510189_INS [dm6]	A	AT	2.829e^-4	0.718	INTRON Dys
2L	9591524	2L_9591524_SNP [dm3] 2L_9591524_SNP [dm6]	C	T	2.832e^-4	0.718	NON_SYNONYMOUS_CODING CG3841	regulatory region REDfly_CRMs
3R	21854790	3R_21854790_SNP [dm3] 3R_26029068_SNP [dm6]	T	C	2.837e^-4	0.718	UTR_3_PRIME E_spl_m5-HLH	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11075285	2R_11075285_SNP [dm3] 2R_15187780_SNP [dm6]	C	A	2.843e^-4	0.718	INTRON igl
3R	514763	3R_514763_SNP [dm3] 3R_4689041_SNP [dm6]	A	T	2.845e^-4	0.718	DOWNSTREAM CG33927 INTRON CG43427
X	9781806	X_9781806_SNP [dm3] X_9887773_SNP [dm6]	T	A	2.848e^-4	0.718	DOWNSTREAM CG15249 INTERGENIC
3R	21651599	3R_21651599_SNP [dm3] 3R_25825877_SNP [dm6]	A	C	2.849e^-4	0.718	UPSTREAM CR44949 INTERGENIC
3R	23302228	3R_23302228_SNP [dm3] 3R_27476506_SNP [dm6]	A	C	2.860e^-4	0.718	INTERGENIC
2L	8933796	2L_8933796_SNP [dm3] 2L_8933796_SNP [dm6]	C	T	2.862e^-4	0.718	UPSTREAM Tsp29Fa DOWNSTREAM CG34398 INTERGENIC
3R	20878155	3R_20878155_SNP [dm3] 3R_25052433_SNP [dm6]	C	T	2.864e^-4	0.718	DOWNSTREAM CG31109 INTRON CG11791	TF binding site mE1_TFBS_HSA
3R	8959393	3R_8959393_SNP [dm3] 3R_13133671_SNP [dm6]	C	G	2.868e^-4	0.718	INTRON timeout & 2 others
3L	10462945	3L_10462945_SNP [dm3] 3L_10469845_SNP [dm6]	A	T	2.882e^-4	0.718	DOWNSTREAM S-Lap3 INTERGENIC
3L	17319237	3L_17319237_SNP [dm3] 3L_17326137_SNP [dm6]	G	A	2.886e^-4	0.718	UPSTREAM CG13725 INTERGENIC
X	5921367	X_5921367_SNP [dm3] X_6027334_SNP [dm6]	T	G	2.888e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	3403755	2L_3403755_SNP [dm3] 2L_3403755_SNP [dm6]	A	T	2.894e^-4	0.718	DOWNSTREAM pgant2 INTERGENIC
2L	6899945	2L_6899945_INS [dm3] 2L_6899945_INS [dm6]	G	GG	2.896e^-4	0.718	INTRON Nlg2
3L	10577506	3L_10577506_SNP [dm3] 3L_10584406_SNP [dm6]	T	A	2.899e^-4	0.718	INTRON A2bp1
2R	19362224	2R_19362224_SNP [dm3] 2R_23474701_SNP [dm6]	T	G	2.902e^-4	0.718	UPSTREAM Or59c DOWNSTREAM CG13557 INTRON CG43795
3R	19776055	3R_19776055_SNP [dm3] 3R_23950333_SNP [dm6]	C	T	2.903e^-4	0.718	INTERGENIC
3R	16871473	3R_16871473_SNP [dm3] 3R_21045751_SNP [dm6]	C	A	2.903e^-4	0.718	NON_SYNONYMOUS_CODING CG31189 DOWNSTREAM CG12278 & 1 other
3R	18232296	3R_18232296_SNP [dm3] 3R_22406574_SNP [dm6]	T	C	2.910e^-4	0.718	SYNONYMOUS_CODING CG13855
3L	3423323	3L_3423323_SNP [dm3] 3L_3423323_SNP [dm6]	G	A	2.910e^-4	0.718	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6561633	X_6561633_SNP [dm3] X_6667600_SNP [dm6]	C	T	2.911e^-4	0.718	UTR_3_PRIME Ctr1A DOWNSTREAM CG3198
3L	2394704	3L_2394704_SNP [dm3] 3L_2394704_SNP [dm6]	C	T	2.913e^-4	0.718	INTRON CG45186	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad
3L	2277128	3L_2277128_SNP [dm3] 3L_2277128_SNP [dm6]	G	C	2.913e^-4	0.718	SYNONYMOUS_CODING yellow-g2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11133373	2R_11133373_SNP [dm3] 2R_15245868_SNP [dm6]	A	G	2.926e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1556849	3L_1556849_SNP [dm3] 3L_1556849_SNP [dm6]	T	C	2.926e^-4	0.718	SYNONYMOUS_CODING CG12099	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17995891	3L_17995891_SNP [dm3] 3L_18002791_SNP [dm6]	T	C	2.927e^-4	0.718	DOWNSTREAM snoRNA:Me28S-A30 INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
3L	11784011	3L_11784011_SNP [dm3] 3L_11790911_SNP [dm6]	C	A	2.928e^-4	0.718	NON_SYNONYMOUS_CODING CG5964 UPSTREAM Pi3K68D	TF binding site mE1_TFBS_chinmo
2L	1321709	2L_1321709_SNP [dm3] 2L_1321709_SNP [dm6]	G	A	2.933e^-4	0.718	INTERGENIC
2L	13305435	2L_13305435_SNP [dm3] 2L_13305435_SNP [dm6]	G	A	2.935e^-4	0.718	SYNONYMOUS_CODING CG43778 UTR_5_PRIME CG16825 UPSTREAM CG16825 DOWNSTREAM CG43779	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11699703	2L_11699703_SNP [dm3] 2L_11699703_SNP [dm6]	G	T	2.938e^-4	0.718	INTERGENIC
2L	12395190	2L_12395190_SNP [dm3] 2L_12395190_SNP [dm6]	T	G	2.940e^-4	0.718	INTRON bru-2
X	16538517	X_16538517_SNP [dm3] X_16644484_SNP [dm6]	A	T	2.943e^-4	0.718	INTRON mthl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	6380557	2L_6380557_SNP [dm3] 2L_6380557_SNP [dm6]	C	T	2.950e^-4	0.718	UPSTREAM CG9507 INTRON CG42368
2L	6292736	2L_6292736_SNP [dm3] 2L_6292736_SNP [dm6]	C	G	2.951e^-4	0.718	INTRON Ddr
3L	911692	3L_911692_SNP [dm3] 3L_911692_SNP [dm6]	A	T	2.954e^-4	0.718	UTR_3_PRIME nerfin-1	regulatory region REDfly_CRMs
3R	21897001	3R_21897001_SNP [dm3] 3R_26071279_SNP [dm6]	T	A	2.956e^-4	0.718	INTRON CR44950
2R	7285414	2R_7285414_SNP [dm3] 2R_11397909_SNP [dm6]	G	T	2.960e^-4	0.718	UPSTREAM sprt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	6380570	2L_6380570_SNP [dm3] 2L_6380570_SNP [dm6]	G	A	2.960e^-4	0.718	UPSTREAM CG9507 INTRON CG42368
3R	14318572	3R_14318572_SNP [dm3] 3R_18492850_SNP [dm6]	T	C	2.961e^-4	0.718	INTRON fru
3L	18129568	3L_18129568_SNP [dm3] 3L_18136468_SNP [dm6]	A	G	2.969e^-4	0.718	UPSTREAM CR44669 INTERGENIC
3R	9017548	3R_9017548_SNP [dm3] 3R_13191826_SNP [dm6]	A	C	2.970e^-4	0.718	INTRON CG8141	TF binding site BDTNP1_TFBS_twi
3R	10839592	3R_10839592_SNP [dm3] 3R_15013870_SNP [dm6]	A	G	2.970e^-4	0.718	UPSTREAM CG14861 INTERGENIC
2L	8798225	2L_8798225_SNP [dm3] 2L_8798225_SNP [dm6]	G	A	2.971e^-4	0.718	INTERGENIC
2L	22452535	2L_22452535_SNP [dm3] 2L_22559803_SNP [dm6]	C	T	2.973e^-4	0.718	INTERGENIC
3R	14448301	3R_14448301_SNP [dm3] 3R_18622579_SNP [dm6]	G	A	2.974e^-4	0.718	INTRON qin	TF binding site mE1_TFBS_inv
3L	13705245	3L_13705245_SNP [dm3] 3L_13712145_SNP [dm6]	A	T	2.979e^-4	0.718	INTRON bru-3
3R	10372298	3R_10372298_SNP [dm3] 3R_14546576_SNP [dm6]	G	A	2.982e^-4	0.718	INTRON Pde6
3R	24984461	3R_24984461_SNP [dm3] 3R_29158739_SNP [dm6]	A	G	2.983e^-4	0.718	INTRON CG11897	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3400833	2L_3400833_SNP [dm3] 2L_3400833_SNP [dm6]	G	A	2.986e^-4	0.718	INTERGENIC
2L	4652120	2L_4652120_SNP [dm3] 2L_4652120_SNP [dm6]	T	C	2.989e^-4	0.718	SYNONYMOUS_CODING CG3355	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14448300	3R_14448300_SNP [dm3] 3R_18622578_SNP [dm6]	C	T	2.992e^-4	0.718	INTRON qin	TF binding site mE1_TFBS_inv
2L	7517687	2L_7517687_INS [dm3] 2L_7517687_INS [dm6]	A	ATTTACCA	2.994e^-4	0.718	INTRON RapGAP1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	5550048	3L_5550048_DEL [dm3] 3L_5556948_DEL [dm6]	ATTCCTTGTATA...	A	2.994e^-4	0.718	INTERGENIC
3R	21505716	3R_21505716_SNP [dm3] 3R_25679994_SNP [dm6]	G	T	2.997e^-4	0.718	SYNONYMOUS_CODING CG4743 UPSTREAM CG5028 DOWNSTREAM CG5039	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1773078	3L_1773078_SNP [dm3] 3L_1773078_SNP [dm6]	A	G	2.997e^-4	0.718	SYNONYMOUS_CODING CG13933 UPSTREAM CR44351	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	9017389	3R_9017389_SNP [dm3] 3R_13191667_SNP [dm6]	T	C	2.999e^-4	0.718	UTR_5_PRIME CG8141	TF binding site BDTNP1_TFBS_twi
3R	19454092	3R_19454092_SNP [dm3] 3R_23628370_SNP [dm6]	T	C	3.000e^-4	0.718	INTRON CG31145
3R	8941438	3R_8941438_SNP [dm3] 3R_13115716_SNP [dm6]	G	A	3.002e^-4	0.718	INTRON timeout
3L	22499989	3L_22499989_SNP [dm3] 3L_22506889_SNP [dm6]	A	G	3.008e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14803971	3R_14803971_SNP [dm3] 3R_18978249_SNP [dm6]	C	T	3.008e^-4	0.718	DOWNSTREAM CG12269 & 2 others INTERGENIC
3L	10905603	3L_10905603_SNP [dm3] 3L_10912503_SNP [dm6]	G	C	3.012e^-4	0.718	INTERGENIC
2L	9173749	2L_9173749_SNP [dm3] 2L_9173749_SNP [dm6]	G	A	3.013e^-4	0.718	INTRON tai	TF binding site mE1_TFBS_kn
2L	22055256	2L_22055256_SNP [dm3] 2L_22055256_SNP [dm6]	A	T	3.014e^-4	0.718	UPSTREAM CG34173 INTERGENIC
2L	14628116	2L_14628116_SNP [dm3] 2L_14628116_SNP [dm6]	A	G	3.017e^-4	0.718	INTRON osp	TF binding site mE1_TFBS_HSA
3R	25420180	3R_25420180_SNP [dm3] 3R_29594458_SNP [dm6]	T	C	3.018e^-4	0.718	INTRON alph	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
3L	12483273	3L_12483273_SNP [dm3] 3L_12490173_SNP [dm6]	T	C	3.020e^-4	0.718	UTR_5_PRIME CG10660 UPSTREAM CR45681 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2092151	3L_2092151_SNP [dm3] 3L_2092151_SNP [dm6]	T	C	3.024e^-4	0.718	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8935441	3R_8935441_DEL [dm3] 3R_13109719_DEL [dm6]	ACCGGGGCACGG...	A	3.026e^-4	0.718	INTRON timeout
2L	951930	2L_951930_SNP [dm3] 2L_951930_SNP [dm6]	C	G	3.032e^-4	0.718	NON_SYNONYMOUS_CODING CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1347371	2L_1347371_INS [dm3] 2L_1347371_INS [dm6]	A	AATT	3.037e^-4	0.718	INTERGENIC
X	2598584	X_2598584_SNP [dm3] X_2704551_SNP [dm6]	C	A	3.045e^-4	0.718	UPSTREAM eIF2B-beta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run
2R	17095299	2R_17095299_SNP [dm3] 2R_21207794_SNP [dm6]	C	G	3.047e^-4	0.718	INTRON CG44245 & 1 other
3R	8930563	3R_8930563_SNP [dm3] 3R_13104841_SNP [dm6]	T	A	3.048e^-4	0.718	INTRON timeout
X	18439569	X_18439569_SNP [dm3] X_18545536_SNP [dm6]	C	T	3.056e^-4	0.718	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6323772	2L_6323772_SNP [dm3] 2L_6323772_SNP [dm6]	T	C	3.057e^-4	0.718	UTR_5_PRIME PDZ-GEF DOWNSTREAM Ddr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	12395189	2L_12395189_SNP [dm3] 2L_12395189_SNP [dm6]	A	G	3.060e^-4	0.718	INTRON bru-2
2L	14628078	2L_14628078_INS [dm3] 2L_14628078_INS [dm6]	G	GATCTGTG	3.060e^-4	0.718	INTRON osp	TF binding site mE1_TFBS_HSA
3R	21547693	3R_21547693_SNP [dm3] 3R_25721971_SNP [dm6]	A	G	3.061e^-4	0.718	INTRON LpR2
3R	26096020	3R_26096020_SNP [dm3] 3R_30270298_SNP [dm6]	A	T	3.067e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	7340131	2L_7340131_SNP [dm3] 2L_7340131_SNP [dm6]	G	A	3.069e^-4	0.718	INTRON Wnt6	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	18804346	3L_18804346_SNP [dm3] 3L_18811246_SNP [dm6]	C	T	3.074e^-4	0.718	INTRON CG14073	TF binding site mE1_TFBS_kn
3L	17992816	3L_17992816_SNP [dm3] 3L_17999716_SNP [dm6]	A	G	3.082e^-4	0.718	UTR_5_PRIME Eip75B INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3R	18753207	3R_18753207_SNP [dm3] 3R_22927485_SNP [dm6]	A	G	3.083e^-4	0.718	INTRON klg
3L	17997323	3L_17997323_SNP [dm3] 3L_18004223_SNP [dm6]	G	T	3.084e^-4	0.718	INTRON Eip75B	TF binding site BDTNP1_TFBS_z
3L	17997325	3L_17997325_SNP [dm3] 3L_18004225_SNP [dm6]	T	A	3.084e^-4	0.718	INTRON Eip75B	TF binding site BDTNP1_TFBS_z
X	19942390	X_19942390_SNP [dm3] X_20048357_SNP [dm6]	C	A	3.092e^-4	0.718	INTRON Dop2R
3R	6349140	3R_6349140_SNP [dm3] 3R_10523418_SNP [dm6]	C	A	3.098e^-4	0.718	INTRON hth
3R	5847316	3R_5847316_SNP [dm3] 3R_10021594_SNP [dm6]	G	A	3.099e^-4	0.718	UPSTREAM Mical INTRON Mical	TF binding site mE1_TFBS_HSA
3R	9022473	3R_9022473_SNP [dm3] 3R_13196751_SNP [dm6]	T	G	3.099e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2L	4194587	2L_4194587_SNP [dm3] 2L_4194587_SNP [dm6]	T	C	3.106e^-4	0.718	INTRON CG3714
3L	9831551	3L_9831551_SNP [dm3] 3L_9838451_SNP [dm6]	A	C	3.108e^-4	0.718	DOWNSTREAM RasGAP1 INTRON Cdk8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	20724361	X_20724361_SNP [dm3] X_20853334_SNP [dm6]	G	T	3.108e^-4	0.718	INTRON shakB
2L	1348256	2L_1348256_SNP [dm3] 2L_1348256_SNP [dm6]	T	A	3.111e^-4	0.718	INTERGENIC
3R	8994381	3R_8994381_SNP [dm3] 3R_13168659_SNP [dm6]	C	G	3.117e^-4	0.718	INTERGENIC
2L	11699693	2L_11699693_SNP [dm3] 2L_11699693_SNP [dm6]	T	G	3.123e^-4	0.718	INTERGENIC
3R	14659144	3R_14659144_SNP [dm3] 3R_18833422_SNP [dm6]	T	G	3.123e^-4	0.718	INTRON CG18208
3L	9551939	3L_9551939_SNP [dm3] 3L_9558839_SNP [dm6]	G	A	3.129e^-4	0.718	INTRON CG42673
2L	14094525	2L_14094525_SNP [dm3] 2L_14094525_SNP [dm6]	T	G	3.132e^-4	0.718	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	10214427	2R_10214427_SNP [dm3] 2R_14326922_SNP [dm6]	T	C	3.142e^-4	0.719	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_cad
3L	2527823	3L_2527823_SNP [dm3] 3L_2527823_SNP [dm6]	G	A	3.142e^-4	0.719	UPSTREAM CG32295 INTRON Spn
3L	16796000	3L_16796000_SNP [dm3] 3L_16802900_SNP [dm6]	C	T	3.150e^-4	0.72	INTRON CG9674
3R	5864367	3R_5864367_SNP [dm3] 3R_10038645_SNP [dm6]	A	T	3.158e^-4	0.721	INTRON Mical
3L	22029777	3L_22029777_SNP [dm3] 3L_22036677_SNP [dm6]	C	A	3.165e^-4	0.721	INTRON Oct-TyrR
X	12270130	X_12270130_SNP [dm3] X_12376097_SNP [dm6]	G	C	3.181e^-4	0.724	SYNONYMOUS_CODING Ir11a	TF binding site mE1_TFBS_chinmo
X	17519314	X_17519314_SNP [dm3] X_17625281_SNP [dm6]	G	A	3.204e^-4	0.727	UTR_3_PRIME stas INTRON stas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	10285082	X_10285082_INS [dm3] X_10391049_INS [dm6]	C	CT	3.225e^-4	0.727	INTRON flw
3L	12414308	3L_12414308_SNP [dm3] 3L_12421208_SNP [dm6]	T	G	3.238e^-4	0.727	INTERGENIC
2R	9342250	2R_9342250_SNP [dm3] 2R_13454745_SNP [dm6]	C	T	3.247e^-4	0.727	SYNONYMOUS_CODING arr
X	14381953	X_14381953_SNP [dm3] X_14487920_SNP [dm6]	T	A	3.256e^-4	0.727	INTERGENIC
X	13698789	X_13698789_SNP [dm3] X_13804756_SNP [dm6]	G	A	3.264e^-4	0.727	INTRON inaE	TF binding site BDTNP1_TFBS_dl
3R	3951033	3R_3951033_SNP [dm3] 3R_8125311_SNP [dm6]	C	G	3.269e^-4	0.727	UTR_3_PRIME CG9667 DOWNSTREAM CG7878
2L	14251466	2L_14251466_SNP [dm3] 2L_14251466_SNP [dm6]	C	T	3.273e^-4	0.727	INTERGENIC
3R	19202990	3R_19202990_INS [dm3] 3R_23377268_INS [dm6]	T	TT	3.278e^-4	0.727	UTR_3_PRIME CG4393	TF binding site mE1_TFBS_inv
3R	26116513	3R_26116513_SNP [dm3] 3R_30290791_SNP [dm6]	A	G	3.280e^-4	0.727	INTRON hdc
2L	958906	2L_958906_SNP [dm3] 2L_958906_SNP [dm6]	T	G	3.280e^-4	0.727	DOWNSTREAM CG4341 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	7238830	2L_7238830_SNP [dm3] 2L_7238830_SNP [dm6]	A	C	3.283e^-4	0.727	INTRON Ndae1
2L	5892534	2L_5892534_SNP [dm3] 2L_5892534_SNP [dm6]	C	T	3.283e^-4	0.727	SYNONYMOUS_CODING Acp26Ab DOWNSTREAM Acp26Aa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	16446658	2R_16446658_SNP [dm3] 2R_20559153_SNP [dm6]	G	A	3.283e^-4	0.727	UTR_3_PRIME lms DOWNSTREAM Mgat1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9592039	2L_9592039_SNP [dm3] 2L_9592039_SNP [dm6]	C	T	3.287e^-4	0.727	DOWNSTREAM CG3841 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
3R	25215084	3R_25215084_SNP [dm3] 3R_29389362_SNP [dm6]	T	A	3.289e^-4	0.727	INTRON Ptp99A
3L	1554329	3L_1554329_SNP [dm3] 3L_1554329_SNP [dm6]	G	A	3.292e^-4	0.727	SYNONYMOUS_CODING Cct2 DOWNSTREAM Cct1	TF binding site mE1_TFBS_cad
3R	1867543	3R_1867543_SNP [dm3] 3R_6041821_SNP [dm6]	T	G	3.296e^-4	0.727	INTERGENIC
3R	18301822	3R_18301822_SNP [dm3] 3R_22476100_SNP [dm6]	A	G	3.297e^-4	0.727	INTRON Nrx-1
2L	3824453	2L_3824453_SNP [dm3] 2L_3824453_SNP [dm6]	A	G	3.301e^-4	0.727	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	18436193	2R_18436193_SNP [dm3] 2R_22548688_SNP [dm6]	A	G	3.304e^-4	0.727	INTRON px
3R	8981995	3R_8981995_SNP [dm3] 3R_13156273_SNP [dm6]	G	A	3.307e^-4	0.727	UPSTREAM 2mit & 1 other INTRON timeout	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14500933	2L_14500933_SNP [dm3] 2L_14500933_SNP [dm6]	C	G	3.311e^-4	0.727	INTERGENIC	silencer mE1_HDAC_PRE
3R	8979318	3R_8979318_SNP [dm3] 3R_13153596_SNP [dm6]	G	C	3.320e^-4	0.727	INTRON timeout & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14628294	2L_14628294_SNP [dm3] 2L_14628294_SNP [dm6]	T	C	3.324e^-4	0.727	INTRON osp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	15513266	X_15513266_SNP [dm3] X_15619233_SNP [dm6]	T	C	3.328e^-4	0.727	INTRON sog	TF binding site mE1_TFBS_cad
X	10770199	X_10770199_SNP [dm3] X_10876166_SNP [dm6]	A	C	3.330e^-4	0.727	INTRON CG1637
2R	16055769	2R_16055769_SNP [dm3] 2R_20168264_SNP [dm6]	A	T	3.336e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10285454	X_10285454_SNP [dm3] X_10391421_SNP [dm6]	A	G	3.336e^-4	0.727	INTRON flw
X	17177038	X_17177038_INS [dm3] X_17283005_INS [dm6]	T	TGGAAGATCATCCAGATAGG...	3.339e^-4	0.727	UPSTREAM CG8664 DOWNSTREAM CG8661 INTRON CG5445	TF binding site mE1_TFBS_inv
X	10770138	X_10770138_SNP [dm3] X_10876105_SNP [dm6]	A	T	3.343e^-4	0.727	INTRON CG1637
3R	26007018	3R_26007018_SNP [dm3] 3R_30181296_SNP [dm6]	C	T	3.344e^-4	0.727	UTR_3_PRIME Bet5
3L	5873800	3L_5873800_SNP [dm3] 3L_5880700_SNP [dm6]	A	G	3.345e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	20878183	3R_20878183_SNP [dm3] 3R_25052461_SNP [dm6]	A	C	3.351e^-4	0.727	DOWNSTREAM CG31109 INTRON CG11791	TF binding site mE1_TFBS_HSA
3R	22786915	3R_22786915_SNP [dm3] 3R_26961193_SNP [dm6]	T	C	3.356e^-4	0.727	UTR_3_PRIME Tsp97E DOWNSTREAM Tsp97E
3R	19902086	3R_19902086_SNP [dm3] 3R_24076364_SNP [dm6]	C	T	3.372e^-4	0.727	INTRON 4EHP
3L	10582957	3L_10582957_SNP [dm3] 3L_10589857_SNP [dm6]	T	A	3.375e^-4	0.727	INTRON A2bp1
2R	10461980	2R_10461980_SNP [dm3] 2R_14574475_SNP [dm6]	C	T	3.377e^-4	0.727	INTRON ttv & 1 other	TF binding site BDTNP1_TFBS_dl
2L	14238531	2L_14238531_SNP [dm3] 2L_14238531_SNP [dm6]	A	G	3.377e^-4	0.727	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	8927212	3R_8927212_SNP [dm3] 3R_13101490_SNP [dm6]	C	G	3.380e^-4	0.727	INTRON timeout
3R	8958396	3R_8958396_SNP [dm3] 3R_13132674_SNP [dm6]	C	G	3.382e^-4	0.727	UTR_5_PRIME 2mit UPSTREAM 2mit INTRON timeout EXON CR45109
2R	13315722	2R_13315722_SNP [dm3] 2R_17428217_SNP [dm6]	G	A	3.384e^-4	0.727	SYNONYMOUS_CODING Mtap UPSTREAM CG6550	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2995741	2L_2995741_SNP [dm3] 2L_2995741_SNP [dm6]	C	T	3.385e^-4	0.727	SYNONYMOUS_CODING CG3558	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5879727	3R_5879727_SNP [dm3] 3R_10054005_SNP [dm6]	C	A	3.388e^-4	0.727	SPLICE_SITE_REGION CR44192 SYNONYMOUS_CODING Npc2e EXON CR44192	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15034521	2R_15034521_SNP [dm3] 2R_19147016_SNP [dm6]	A	G	3.398e^-4	0.727	INTRON ena
2R	11227819	2R_11227819_DEL [dm3] 2R_15340314_DEL [dm6]	AAC	A	3.398e^-4	0.727	UPSTREAM unc-5 DOWNSTREAM Hr51 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	5884933	2L_5884933_SNP [dm3] 2L_5884933_SNP [dm6]	G	C	3.399e^-4	0.727	UTR_5_PRIME CG43185 UPSTREAM Sfp26Ac DOWNSTREAM CG44574
X	17177730	X_17177730_SNP [dm3] X_17283697_SNP [dm6]	T	A	3.410e^-4	0.727	UPSTREAM CG8664 DOWNSTREAM CG8661 INTRON CG5445
X	19386605	X_19386605_SNP [dm3] X_19492572_SNP [dm6]	C	T	3.414e^-4	0.727	SYNONYMOUS_CODING CG12203 UPSTREAM pcm DOWNSTREAM CG12204	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	1560006	3L_1560006_SNP [dm3] 3L_1560006_SNP [dm6]	A	T	3.416e^-4	0.727	UTR_3_PRIME CG7879 DOWNSTREAM Pex10	TF binding site mE1_TFBS_inv mE1_TFBS_sbb
2L	6300454	2L_6300454_DEL [dm3] 2L_6300454_DEL [dm6]	TGAGCCCAATT...	T	3.417e^-4	0.727	INTRON Ddr
2R	15905889	2R_15905889_SNP [dm3] 2R_20018384_SNP [dm6]	G	A	3.418e^-4	0.727	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11176579	3L_11176579_SNP [dm3] 3L_11183479_SNP [dm6]	T	C	3.428e^-4	0.727	INTRON GlcAT-P
X	20723306	X_20723306_SNP [dm3] X_20852279_SNP [dm6]	C	T	3.438e^-4	0.727	INTRON shakB
2L	8653400	2L_8653400_SNP [dm3] 2L_8653400_SNP [dm6]	C	T	3.446e^-4	0.727	INTRON Sema-1a
3L	4296894	3L_4296894_SNP [dm3] 3L_4296894_SNP [dm6]	G	T	3.450e^-4	0.727	INTRON dyl
3R	26535141	3R_26535141_SNP [dm3] 3R_30709419_SNP [dm6]	A	G	3.453e^-4	0.727	INTERGENIC
X	6686683	X_6686683_SNP [dm3] X_6792650_SNP [dm6]	A	C	3.453e^-4	0.727	INTRON C3G
2L	8795689	2L_8795689_SNP [dm3] 2L_8795689_SNP [dm6]	C	T	3.460e^-4	0.727	INTERGENIC
3L	18543708	3L_18543708_SNP [dm3] 3L_18550608_SNP [dm6]	A	T	3.460e^-4	0.727	INTERGENIC
3L	2366157	3L_2366157_SNP [dm3] 3L_2366157_SNP [dm6]	C	A	3.460e^-4	0.727	INTERGENIC
3R	14231451	3R_14231451_SNP [dm3] 3R_18405729_SNP [dm6]	T	C	3.463e^-4	0.727	SYNONYMOUS_CODING CG7685 DOWNSTREAM CG31122	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5792853	3L_5792853_SNP [dm3] 3L_5799753_SNP [dm6]	G	C	3.472e^-4	0.727	UTR_3_PRIME S6k
3L	9169977	3L_9169977_DEL [dm3] 3L_9176877_DEL [dm6]	TT	T	3.475e^-4	0.727	INTRON Rdl
3R	8964282	3R_8964282_SNP [dm3] 3R_13138560_SNP [dm6]	A	C	3.477e^-4	0.727	INTRON timeout & 2 others
2L	5884279	2L_5884279_SNP [dm3] 2L_5884279_SNP [dm6]	C	T	3.480e^-4	0.727	NON_SYNONYMOUS_CODING CG44574 UPSTREAM CG43185 DOWNSTREAM Sfp26Ac
3R	19905255	3R_19905255_SNP [dm3] 3R_24079533_SNP [dm6]	A	C	3.480e^-4	0.727	INTRON 4EHP
3R	8884490	3R_8884490_SNP [dm3] 3R_13058768_SNP [dm6]	T	C	3.481e^-4	0.727	INTRON sim	TF binding site mE1_TFBS_Kr
2L	12088176	2L_12088176_DEL [dm3] 2L_12088176_DEL [dm6]	GCTGT	CAAA	3.484e^-4	0.727	DOWNSTREAM CR44593 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13333230	2R_13333230_SNP [dm3] 2R_17445725_SNP [dm6]	A	G	3.500e^-4	0.727	UPSTREAM EDTP INTRON mthl4
2L	14094710	2L_14094710_SNP [dm3] 2L_14094710_SNP [dm6]	C	A	3.500e^-4	0.727	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	9531813	2L_9531813_SNP [dm3] 2L_9531813_SNP [dm6]	C	T	3.506e^-4	0.727	INTRON Oatp30B
2R	17449501	2R_17449501_SNP [dm3] 2R_21561996_SNP [dm6]	G	A	3.510e^-4	0.727	SYNONYMOUS_CODING CG10440	TF binding site mE1_TFBS_chinmo
X	6876144	X_6876144_SNP [dm3] X_6982111_SNP [dm6]	C	T	3.519e^-4	0.727	UPSTREAM ogre INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	1556153	3L_1556153_SNP [dm3] 3L_1556153_SNP [dm6]	C	T	3.522e^-4	0.727	SYNONYMOUS_CODING CG12099 DOWNSTREAM Cct2	TF binding site mE1_TFBS_cad
3L	12828504	3L_12828504_SNP [dm3] 3L_12835404_SNP [dm6]	T	A	3.533e^-4	0.727	INTRON CG10960	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sbb
3R	15319382	3R_15319382_SNP [dm3] 3R_19493660_SNP [dm6]	G	C	3.534e^-4	0.727	INTRON Dys
2R	15827354	2R_15827354_SNP [dm3] 2R_19939849_SNP [dm6]	C	T	3.535e^-4	0.727	DOWNSTREAM CR43421 INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	23728856	3R_23728856_SNP [dm3] 3R_27903134_SNP [dm6]	G	A	3.538e^-4	0.727	INTRON CG34353
2L	5417859	2L_5417859_SNP [dm3] 2L_5417859_SNP [dm6]	T	A	3.538e^-4	0.727	INTERGENIC
2L	952580	2L_952580_SNP [dm3] 2L_952580_SNP [dm6]	C	T	3.539e^-4	0.727	SYNONYMOUS_CODING CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	987516	2L_987516_SNP [dm3] 2L_987516_SNP [dm6]	G	C	3.555e^-4	0.727	DOWNSTREAM CR44801 INTERGENIC
3L	9730632	3L_9730632_DEL [dm3] 3L_9737532_DEL [dm6]	TATATAAGAGCTTTTTCTTT...	T	3.559e^-4	0.727	INTRON CG42268
2L	9595380	2L_9595380_SNP [dm3] 2L_9595380_SNP [dm6]	A	T	3.567e^-4	0.727	INTERGENIC	regulatory region REDfly_CRMs
3R	15341531	3R_15341531_SNP [dm3] 3R_19515809_SNP [dm6]	A	G	3.575e^-4	0.727	INTRON Dys
3L	2044737	3L_2044737_SNP [dm3] 3L_2044737_SNP [dm6]	G	A	3.575e^-4	0.727	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10466227	3L_10466227_SNP [dm3] 3L_10473127_SNP [dm6]	T	C	3.580e^-4	0.727	INTERGENIC
3R	22159148	3R_22159148_SNP [dm3] 3R_26333426_SNP [dm6]	T	C	3.580e^-4	0.727	INTRON CG33970
2L	14314644	2L_14314644_DEL [dm3] 2L_14314644_DEL [dm6]	ACCCCAGGAAA...	A	3.586e^-4	0.727	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	2354692	3L_2354692_SNP [dm3] 3L_2354692_SNP [dm6]	C	T	3.587e^-4	0.727	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14628267	2L_14628267_SNP [dm3] 2L_14628267_SNP [dm6]	C	T	3.589e^-4	0.727	INTRON osp	TF binding site mE1_TFBS_HSA
2R	12760625	2R_12760625_SNP [dm3] 2R_16873120_SNP [dm6]	C	T	3.597e^-4	0.727	SYNONYMOUS_CODING CG6429 UPSTREAM CG6435 DOWNSTREAM CG6421	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9123441	2L_9123441_SNP [dm3] 2L_9123441_SNP [dm6]	T	C	3.598e^-4	0.727	UPSTREAM CR44615 INTERGENIC
X	4567141	X_4567141_SNP [dm3] X_4673108_SNP [dm6]	A	G	3.601e^-4	0.727	INTRON rap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4303077	3R_4303077_SNP [dm3] 3R_8477355_SNP [dm6]	T	A	3.602e^-4	0.727	INTRON CG45263	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
3R	16545784	3R_16545784_SNP [dm3] 3R_20720062_SNP [dm6]	T	C	3.605e^-4	0.727	INTERGENIC
3R	21897013	3R_21897013_SNP [dm3] 3R_26071291_SNP [dm6]	A	T	3.608e^-4	0.727	INTRON CR44950
X	18439381	X_18439381_SNP [dm3] X_18545348_SNP [dm6]	G	A	3.622e^-4	0.727	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9219349	X_9219349_SNP [dm3] X_9325316_SNP [dm6]	T	C	3.624e^-4	0.727	UTR_3_PRIME CG34449 DOWNSTREAM c12.2
3R	8940505	3R_8940505_SNP [dm3] 3R_13114783_SNP [dm6]	A	G	3.633e^-4	0.727	INTRON timeout
3R	4700688	3R_4700688_SNP [dm3] 3R_8874966_SNP [dm6]	C	A	3.635e^-4	0.727	INTRON pyd
3L	22565086	3L_22565086_SNP [dm3] 3L_22571986_SNP [dm6]	T	A	3.636e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6485159	2L_6485159_SNP [dm3] 2L_6485159_SNP [dm6]	T	C	3.637e^-4	0.727	SYNONYMOUS_CODING DLP
3L	9582347	3L_9582347_SNP [dm3] 3L_9589247_SNP [dm6]	A	C	3.638e^-4	0.727	INTRON CG42673
3R	8471644	3R_8471644_SNP [dm3] 3R_12645922_SNP [dm6]	A	G	3.640e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	21529300	3R_21529300_SNP [dm3] 3R_25703578_SNP [dm6]	G	A	3.642e^-4	0.727	INTRON LpR2
X	20722651	X_20722651_SNP [dm3] X_20851624_SNP [dm6]	G	C	3.650e^-4	0.727	INTRON shakB
2L	8850885	2L_8850885_SNP [dm3] 2L_8850885_SNP [dm6]	A	T	3.657e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14628383	2L_14628383_SNP [dm3] 2L_14628383_SNP [dm6]	G	T	3.658e^-4	0.727	INTRON osp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2022424	3L_2022424_SNP [dm3] 3L_2022424_SNP [dm6]	T	A	3.659e^-4	0.727	NON_SYNONYMOUS_CODING CG42356 UPSTREAM CG42357
2L	12228185	2L_12228185_INS [dm3] 2L_12228185_INS [dm6]	T	TGTTGGACAAACT...	3.660e^-4	0.727	INTRON aret
3L	22601974	3L_22601974_SNP [dm3] 3L_22608874_SNP [dm6]	G	A	3.660e^-4	0.727	INTRON CG14459
2L	2761344	2L_2761344_SNP [dm3] 2L_2761344_SNP [dm6]	C	G	3.664e^-4	0.727	INTRON Trn-SR	TF binding site mE1_TFBS_cad
2L	19480799	2L_19480799_SNP [dm3] 2L_19480799_SNP [dm6]	G	A	3.668e^-4	0.727	INTERGENIC
2L	22312106	2L_22312106_SNP [dm3] 2L_22312106_SNP [dm6]	C	T	3.674e^-4	0.727	INTRON CG17018
X	16343614	X_16343614_INS [dm3] X_16449581_INS [dm6]	A	AAGAAGAAGA	3.675e^-4	0.727	INTRON Rbp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6295776	2L_6295776_SNP [dm3] 2L_6295776_SNP [dm6]	G	A	3.680e^-4	0.727	INTRON Ddr
3R	8927737	3R_8927737_SNP [dm3] 3R_13102015_SNP [dm6]	G	T	3.682e^-4	0.727	INTRON timeout
2L	14094524	2L_14094524_SNP [dm3] 2L_14094524_SNP [dm6]	A	C	3.687e^-4	0.727	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	6394739	2L_6394739_SNP [dm3] 2L_6394739_SNP [dm6]	C	G	3.687e^-4	0.727	INTRON CG42368
X	20725473	X_20725473_SNP [dm3] X_20854446_SNP [dm6]	T	G	3.695e^-4	0.727	INTRON shakB
3R	26012782	3R_26012782_SNP [dm3] 3R_30187060_SNP [dm6]	G	A	3.701e^-4	0.727	INTRON CG9747
2R	18724227	2R_18724227_SNP [dm3] 2R_22836704_SNP [dm6]	A	T	3.701e^-4	0.727	UPSTREAM CG9825 DOWNSTREAM CG12490 INTERGENIC
3R	8040919	3R_8040919_SNP [dm3] 3R_12215197_SNP [dm6]	T	C	3.713e^-4	0.727	UTR_3_PRIME CG4848 DOWNSTREAM CG4848 INTRON CG14742
2L	22348628	2L_22348628_SNP [dm3] 2L_22348628_SNP [dm6]	C	A	3.730e^-4	0.727	INTRON CG17018
2R	10212573	2R_10212573_SNP [dm3] 2R_14325068_SNP [dm6]	G	C	3.735e^-4	0.727	INTRON Shroom
2L	4141930	2L_4141930_SNP [dm3] 2L_4141930_SNP [dm6]	G	A	3.735e^-4	0.727	INTERGENIC
2R	19116584	2R_19116584_SNP [dm3] 2R_23229061_SNP [dm6]	T	C	3.747e^-4	0.727	INTERGENIC
2L	14628380	2L_14628380_SNP [dm3] 2L_14628380_SNP [dm6]	G	T	3.752e^-4	0.727	INTRON osp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7109347	3L_7109347_SNP [dm3] 3L_7116247_SNP [dm6]	G	A	3.759e^-4	0.727	INTRON form3
3R	17015231	3R_17015231_DEL [dm3] 3R_21189509_DEL [dm6]	AGAAA	A	3.765e^-4	0.727	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1002532	3L_1002532_SNP [dm3] 3L_1002532_SNP [dm6]	C	A	3.771e^-4	0.727	INTRON trio
3L	9676967	3L_9676967_DEL [dm3] 3L_9683867_DEL [dm6]	TGTGT	T	3.780e^-4	0.727	UTR_3_PRIME CG6767 DOWNSTREAM alphaTub67C
2L	7727994	2L_7727994_SNP [dm3] 2L_7727994_SNP [dm6]	C	T	3.787e^-4	0.727	SYNONYMOUS_CODING CG13796
2R	16055475	2R_16055475_INS [dm3] 2R_20167970_INS [dm6]	T	TT	3.788e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll
3L	6089261	3L_6089261_SNP [dm3] 3L_6096161_SNP [dm6]	G	T	3.791e^-4	0.727	INTRON loj	TF binding site mE1_TFBS_sens
X	17177325	X_17177325_SNP [dm3] X_17283292_SNP [dm6]	T	A	3.796e^-4	0.727	UPSTREAM CG8664 DOWNSTREAM CG8661 INTRON CG5445
3L	17995088	3L_17995088_SNP [dm3] 3L_18001988_SNP [dm6]	C	T	3.797e^-4	0.727	DOWNSTREAM snoRNA:Me28S-A30 INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9675685	2R_9675685_SNP [dm3] 2R_13788180_SNP [dm6]	A	G	3.798e^-4	0.727	DOWNSTREAM Cpr50Ca INTERGENIC
3R	26760774	3R_26760774_SNP [dm3] 3R_30935052_SNP [dm6]	C	T	3.805e^-4	0.727	DOWNSTREAM CG15549 INTERGENIC
3R	20007902	3R_20007902_SNP [dm3] 3R_24182180_SNP [dm6]	C	G	3.811e^-4	0.727	DOWNSTREAM CG13606 INTRON CG13606
2L	6370935	2L_6370935_SNP [dm3] 2L_6370935_SNP [dm6]	C	T	3.819e^-4	0.727	DOWNSTREAM CG9505 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	18129539	3L_18129539_SNP [dm3] 3L_18136439_SNP [dm6]	A	C	3.822e^-4	0.727	UPSTREAM CR44669 INTERGENIC
3L	3506775	3L_3506775_SNP [dm3] 3L_3506775_SNP [dm6]	A	G	3.837e^-4	0.727	SYNONYMOUS_CODING CG42324	TF binding site mE1_TFBS_cad
X	16071532	X_16071532_SNP [dm3] X_16177499_SNP [dm6]	G	A	3.839e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	14955036	3R_14955036_SNP [dm3] 3R_19129314_SNP [dm6]	G	A	3.840e^-4	0.727	SYNONYMOUS_CODING CG6040	TF binding site mE1_TFBS_chinmo
2L	22351352	2L_22351352_SNP [dm3] 2L_22351352_SNP [dm6]	T	C	3.843e^-4	0.727	INTRON CG17018	transposable element FlyBase
X	1618995	X_1618995_SNP [dm3] X_1724962_SNP [dm6]	C	T	3.853e^-4	0.727	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	1619031	X_1619031_SNP [dm3] X_1724998_SNP [dm6]	G	A	3.853e^-4	0.727	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	3728470	2L_3728470_SNP [dm3] 2L_3728470_SNP [dm6]	A	G	3.856e^-4	0.727	UTR_3_PRIME Shaw DOWNSTREAM Shaw
2R	14704154	2R_14704154_SNP [dm3] 2R_18816649_SNP [dm6]	A	G	3.857e^-4	0.727	UPSTREAM CG15096 INTERGENIC
3R	8569336	3R_8569336_SNP [dm3] 3R_12743614_SNP [dm6]	G	C	3.857e^-4	0.727	NON_SYNONYMOUS_CODING CG5999
2L	12137517	2L_12137517_SNP [dm3] 2L_12137517_SNP [dm6]	C	T	3.868e^-4	0.727	UPSTREAM Gr33a INTERGENIC
3L	7314619	3L_7314619_SNP [dm3] 3L_7321519_SNP [dm6]	A	G	3.871e^-4	0.727	SYNONYMOUS_CODING RhoGEF4 DOWNSTREAM CG8607
X	13155178	X_13155178_SNP [dm3] X_13261145_SNP [dm6]	T	G	3.884e^-4	0.727	SYNONYMOUS_CODING comt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14094539	2L_14094539_SNP [dm3] 2L_14094539_SNP [dm6]	G	C	3.894e^-4	0.727	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	13316829	2R_13316829_SNP [dm3] 2R_17429324_SNP [dm6]	A	G	3.894e^-4	0.727	DOWNSTREAM Bap55 & 1 other INTERGENIC
3L	6433767	3L_6433767_SNP [dm3] 3L_6440667_SNP [dm6]	T	G	3.908e^-4	0.727	INTRON CG42747
3R	6852411	3R_6852411_SNP [dm3] 3R_11026689_SNP [dm6]	G	T	3.915e^-4	0.727	INTRON CG34114
3R	22159225	3R_22159225_SNP [dm3] 3R_26333503_SNP [dm6]	C	G	3.929e^-4	0.727	INTRON CG33970
2L	3243299	2L_3243299_SNP [dm3] 2L_3243299_SNP [dm6]	T	C	3.931e^-4	0.727	INTERGENIC
2L	22322737	2L_22322737_SNP [dm3] 2L_22322737_SNP [dm6]	T	C	3.934e^-4	0.727	INTRON CG17018
2R	17922521	2R_17922521_SNP [dm3] 2R_22035016_SNP [dm6]	T	C	3.945e^-4	0.727	SYNONYMOUS_CODING CG9308 INTRON CG34370
3R	21657863	3R_21657863_DEL [dm3] 3R_25832141_DEL [dm6]	TT	T	3.947e^-4	0.727	UPSTREAM alpha4GT2 & 1 other INTERGENIC
3R	8930702	3R_8930702_SNP [dm3] 3R_13104980_SNP [dm6]	C	T	3.948e^-4	0.727	INTRON timeout
3R	8958954	3R_8958954_SNP [dm3] 3R_13133232_SNP [dm6]	T	A	3.953e^-4	0.727	UPSTREAM 2mit INTRON timeout & 2 others
3L	5809260	3L_5809260_SNP [dm3] 3L_5816160_SNP [dm6]	G	T	3.954e^-4	0.727	INTRON vn
2L	14319218	2L_14319218_SNP [dm3] 2L_14319218_SNP [dm6]	G	T	3.954e^-4	0.727	INTRON wb
2L	9592088	2L_9592088_SNP [dm3] 2L_9592088_SNP [dm6]	G	T	3.956e^-4	0.727	DOWNSTREAM CG3841 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
2R	11227791	2R_11227791_SNP [dm3] 2R_15340286_SNP [dm6]	T	C	3.956e^-4	0.727	UPSTREAM unc-5 DOWNSTREAM Hr51 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	11703508	2L_11703508_SNP [dm3] 2L_11703508_SNP [dm6]	G	A	3.963e^-4	0.727	INTERGENIC
3L	5910990	3L_5910990_SNP [dm3] 3L_5917890_SNP [dm6]	A	G	3.966e^-4	0.727	UPSTREAM CR45167 DOWNSTREAM CG10483 & 1 other INTERGENIC
2L	10445671	2L_10445671_SNP [dm3] 2L_10445671_SNP [dm6]	A	G	3.971e^-4	0.727	NON_SYNONYMOUS_CODING loh
3R	15340472	3R_15340472_SNP [dm3] 3R_19514750_SNP [dm6]	G	T	3.976e^-4	0.727	INTRON Dys
2L	2556482	2L_2556482_SNP [dm3] 2L_2556482_SNP [dm6]	G	A	3.977e^-4	0.727	DOWNSTREAM CR44113 INTERGENIC
3L	2523765	3L_2523765_SNP [dm3] 3L_2523765_SNP [dm6]	G	A	3.979e^-4	0.727	INTRON Spn

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.447e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.06614
In_3R_P	0.05911

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.4247	0.0642
In_3R_P	7.3934	0.0248

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2048 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	2001397	3L_2001397_DEL [dm3] 3L_2001397_DEL [dm6]	AA	A	3.664e^-7	0.482	INTERGENIC
3R	7596517	3R_7596517_INS [dm3] 3R_11770795_INS [dm6]	A	AA	6.633e^-7	0.482	INTRON l_3_neo38	TF binding site BDTNP1_TFBS_dl
X	18439213	X_18439213_SNP [dm3] X_18545180_SNP [dm6]	A	G	7.702e^-7	0.482	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15261343	X_15261343_SNP [dm3] X_15367310_SNP [dm6]	G	A	1.123e^-6	0.527	INTRON acj6
3L	4713390	3L_4713390_SNP [dm3] 3L_4713390_SNP [dm6]	T	A	3.933e^-6	0.753	INTRON RhoGEF64C
3R	21999314	3R_21999314_SNP [dm3] 3R_26173592_SNP [dm6]	C	T	4.350e^-6	0.753	INTRON CG31323
3R	26259382	3R_26259382_SNP [dm3] 3R_30433660_SNP [dm6]	T	A	4.745e^-6	0.753	INTRON CG15534
3R	14460185	3R_14460185_SNP [dm3] 3R_18634463_SNP [dm6]	C	G	5.052e^-6	0.753	INTRON qin & 1 other
3R	21657851	3R_21657851_SNP [dm3] 3R_25832129_SNP [dm6]	C	T	5.230e^-6	0.753	UPSTREAM alpha4GT2 & 1 other INTERGENIC
X	10025818	X_10025818_SNP [dm3] X_10131785_SNP [dm6]	G	A	5.591e^-6	0.753	INTRON CR44894 & 1 other
3L	2040697	3L_2040697_SNP [dm3] 3L_2040697_SNP [dm6]	A	G	6.067e^-6	0.753	INTRON sls
3L	10209516	3L_10209516_SNP [dm3] 3L_10216416_SNP [dm6]	A	G	6.103e^-6	0.753	SYNONYMOUS_CODING CG8065
3R	8940509	3R_8940509_SNP [dm3] 3R_13114787_SNP [dm6]	T	C	6.592e^-6	0.753	INTRON timeout
2R	16382690	2R_16382690_SNP [dm3] 2R_20495185_SNP [dm6]	A	G	7.001e^-6	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	7843258	2R_7843258_SNP [dm3] 2R_11955753_SNP [dm6]	T	G	7.133e^-6	0.753	INTRON CG13188
3R	22786915	3R_22786915_SNP [dm3] 3R_26961193_SNP [dm6]	T	C	7.714e^-6	0.753	UTR_3_PRIME Tsp97E DOWNSTREAM Tsp97E
3R	23629115	3R_23629115_SNP [dm3] 3R_27803393_SNP [dm6]	C	G	7.714e^-6	0.753	INTRON CG34353
3L	10209504	3L_10209504_SNP [dm3] 3L_10216404_SNP [dm6]	C	T	9.243e^-6	0.753	SYNONYMOUS_CODING CG8065
3R	8940399	3R_8940399_SNP [dm3] 3R_13114677_SNP [dm6]	T	C	9.355e^-6	0.753	INTRON timeout
3L	4721738	3L_4721738_SNP [dm3] 3L_4721738_SNP [dm6]	C	A	9.905e^-6	0.753	INTRON RhoGEF64C
3R	1581957	3R_1581957_SNP [dm3] 3R_5756235_SNP [dm6]	T	G	1.000e^-5	0.753	NON_SYNONYMOUS_CODING Sec8
X	9629439	X_9629439_SNP [dm3] X_9735406_SNP [dm6]	C	T	1.031e^-5	0.753	INTRON Sp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
2L	7051560	2L_7051560_SNP [dm3] 2L_7051560_SNP [dm6]	T	C	1.099e^-5	0.753	SYNONYMOUS_CODING milt	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	3430842	3L_3430842_SNP [dm3] 3L_3430842_SNP [dm6]	A	G	1.133e^-5	0.753	INTRON eIF5B
2L	14101093	2L_14101093_SNP [dm3] 2L_14101093_SNP [dm6]	G	C	1.135e^-5	0.753	INTERGENIC
3R	1583916	3R_1583916_SNP [dm3] 3R_5758194_SNP [dm6]	A	G	1.146e^-5	0.753	NON_SYNONYMOUS_CODING Sec8 DOWNSTREAM CG2082	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1003968	3L_1003968_SNP [dm3] 3L_1003968_SNP [dm6]	G	T	1.291e^-5	0.753	INTRON trio	TF binding site mE1_TFBS_chinmo
3L	2001853	3L_2001853_SNP [dm3] 3L_2001853_SNP [dm6]	C	T	1.293e^-5	0.753	INTERGENIC
3R	26259333	3R_26259333_SNP [dm3] 3R_30433611_SNP [dm6]	C	T	1.301e^-5	0.753	INTRON CG15534
3R	8939969	3R_8939969_SNP [dm3] 3R_13114247_SNP [dm6]	A	G	1.309e^-5	0.753	SPLICE_SITE_REGION timeout INTRON timeout
2R	13088095	2R_13088095_SNP [dm3] 2R_17200590_SNP [dm6]	C	T	1.360e^-5	0.753	INTERGENIC
2L	19003351	2L_19003351_DEL [dm3] 2L_19003351_DEL [dm6]	GGGCATTCG	G	1.389e^-5	0.753	UPSTREAM CG31793 DOWNSTREAM CG31792 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7032497	3R_7032497_SNP [dm3] 3R_11206775_SNP [dm6]	T	A	1.422e^-5	0.753	INTRON cu
3R	5196345	3R_5196345_SNP [dm3] 3R_9370623_SNP [dm6]	T	C	1.447e^-5	0.753	INTRON FER
3R	20862978	3R_20862978_SNP [dm3] 3R_25037256_SNP [dm6]	C	A	1.493e^-5	0.753	SYNONYMOUS_CODING CG31115 INTRON CG6422
2R	7022312	2R_7022312_SNP [dm3] 2R_11134807_SNP [dm6]	T	C	1.569e^-5	0.753	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	7022322	2R_7022322_SNP [dm3] 2R_11134817_SNP [dm6]	T	G	1.584e^-5	0.753	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	18037554	3R_18037554_SNP [dm3] 3R_22211832_SNP [dm6]	C	A	1.586e^-5	0.753	UTR_5_PRIME Gld2 UPSTREAM Gld2 INTRON SKIP
3R	7033012	3R_7033012_SNP [dm3] 3R_11207290_SNP [dm6]	G	A	1.652e^-5	0.753	INTRON cu
2L	4230462	2L_4230462_SNP [dm3] 2L_4230462_SNP [dm6]	T	G	1.683e^-5	0.753	INTERGENIC
3L	2001508	3L_2001508_SNP [dm3] 3L_2001508_SNP [dm6]	T	C	1.684e^-5	0.753	INTERGENIC
2R	16382688	2R_16382688_SNP [dm3] 2R_20495183_SNP [dm6]	C	A	1.745e^-5	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	5196323	3R_5196323_SNP [dm3] 3R_9370601_SNP [dm6]	T	G	1.910e^-5	0.753	INTRON FER
3R	21657882	3R_21657882_SNP [dm3] 3R_25832160_SNP [dm6]	C	A	1.927e^-5	0.753	UPSTREAM alpha4GT2 & 1 other INTERGENIC
3R	18385273	3R_18385273_SNP [dm3] 3R_22559551_SNP [dm6]	A	C	2.013e^-5	0.753	INTRON CG5278
3L	11341755	3L_11341755_DEL [dm3] 3L_11348655_DEL [dm6]	GGTTTGT	G	2.020e^-5	0.753	DOWNSTREAM CR45251 INTERGENIC
2L	4364375	2L_4364375_SNP [dm3] 2L_4364375_SNP [dm6]	T	C	2.081e^-5	0.753	UPSTREAM CR45363 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6380628	2L_6380628_SNP [dm3] 2L_6380628_SNP [dm6]	C	T	2.090e^-5	0.753	UPSTREAM CG9507 INTRON CG42368
3R	1586675	3R_1586675_SNP [dm3] 3R_5760953_SNP [dm6]	C	T	2.110e^-5	0.753	SYNONYMOUS_CODING CG2082 DOWNSTREAM CG2082
3R	5196331	3R_5196331_SNP [dm3] 3R_9370609_SNP [dm6]	A	T	2.110e^-5	0.753	INTRON FER
3R	8951235	3R_8951235_SNP [dm3] 3R_13125513_SNP [dm6]	C	T	2.118e^-5	0.753	UTR_3_PRIME 2mit DOWNSTREAM 2mit INTRON timeout
3R	8967667	3R_8967667_SNP [dm3] 3R_13141945_SNP [dm6]	A	G	2.122e^-5	0.753	INTRON timeout & 2 others
3L	2001566	3L_2001566_SNP [dm3] 3L_2001566_SNP [dm6]	T	C	2.191e^-5	0.753	INTERGENIC
3R	6349140	3R_6349140_SNP [dm3] 3R_10523418_SNP [dm6]	C	A	2.225e^-5	0.753	INTRON hth
X	5921347	X_5921347_SNP [dm3] X_6027314_SNP [dm6]	C	G	2.245e^-5	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	7033253	3R_7033253_SNP [dm3] 3R_11207531_SNP [dm6]	T	C	2.362e^-5	0.753	INTRON cu
3R	18075673	3R_18075673_SNP [dm3] 3R_22249951_SNP [dm6]	T	C	2.364e^-5	0.753	INTRON SKIP
2L	6156253	2L_6156253_SNP [dm3] 2L_6156253_SNP [dm6]	G	T	2.385e^-5	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14058013	3L_14058013_SNP [dm3] 3L_14064913_SNP [dm6]	C	T	2.518e^-5	0.753	INTRON CG32138
3R	7035761	3R_7035761_SNP [dm3] 3R_11210039_SNP [dm6]	T	G	2.526e^-5	0.753	UPSTREAM Tctp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	4194315	2L_4194315_SNP [dm3] 2L_4194315_SNP [dm6]	C	A	2.537e^-5	0.753	INTRON CG3714
3R	7032485	3R_7032485_SNP [dm3] 3R_11206763_SNP [dm6]	T	C	2.569e^-5	0.753	INTRON cu
3R	7032889	3R_7032889_SNP [dm3] 3R_11207167_SNP [dm6]	G	C	2.587e^-5	0.753	INTRON cu
3R	1559173	3R_1559173_SNP [dm3] 3R_5733451_SNP [dm6]	C	T	2.603e^-5	0.753	UPSTREAM CG1239 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	24034256	3R_24034256_SNP [dm3] 3R_28208534_SNP [dm6]	T	C	2.619e^-5	0.753	INTRON CG34354	TF binding site mE1_TFBS_chinmo
2L	6380594	2L_6380594_DEL [dm3] 2L_6380594_DEL [dm6]	GA	G	2.726e^-5	0.753	UPSTREAM CG9507 INTRON CG42368
2L	8653407	2L_8653407_SNP [dm3] 2L_8653407_SNP [dm6]	A	G	2.749e^-5	0.753	INTRON Sema-1a
2L	12641004	2L_12641004_SNP [dm3] 2L_12641004_SNP [dm6]	T	C	2.839e^-5	0.753	START_GAINED Ref2 UTR_5_PRIME Ref2
3R	14803971	3R_14803971_SNP [dm3] 3R_18978249_SNP [dm6]	C	T	2.891e^-5	0.753	DOWNSTREAM CG12269 & 2 others INTERGENIC
3R	21657604	3R_21657604_SNP [dm3] 3R_25831882_SNP [dm6]	C	T	2.907e^-5	0.753	UTR_5_PRIME Mst57Da UPSTREAM Mst57Db & 1 other
X	8327851	X_8327851_SNP [dm3] X_8433818_SNP [dm6]	A	T	2.908e^-5	0.753	UPSTREAM CG32712 DOWNSTREAM CG12125 & 1 other INTERGENIC
3R	18395420	3R_18395420_SNP [dm3] 3R_22569698_SNP [dm6]	G	T	3.010e^-5	0.753	UPSTREAM CG33110 INTERGENIC
3R	22786876	3R_22786876_SNP [dm3] 3R_26961154_SNP [dm6]	A	T	3.065e^-5	0.753	UTR_3_PRIME Tsp97E DOWNSTREAM Tsp97E
3R	7023602	3R_7023602_SNP [dm3] 3R_11197880_SNP [dm6]	T	C	3.100e^-5	0.753	DOWNSTREAM CG18577 INTRON cu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10370747	3R_10370747_SNP [dm3] 3R_14545025_SNP [dm6]	C	A	3.106e^-5	0.753	INTRON Pde6
2L	8657667	2L_8657667_SNP [dm3] 2L_8657667_SNP [dm6]	G	A	3.138e^-5	0.753	INTRON Sema-1a
2L	17087502	2L_17087502_SNP [dm3] 2L_17087502_SNP [dm6]	A	C	3.150e^-5	0.753	UPSTREAM CG12620 INTERGENIC
3R	1571778	3R_1571778_SNP [dm3] 3R_5746056_SNP [dm6]	A	C	3.166e^-5	0.753	UTR_3_PRIME Madm
3R	26259507	3R_26259507_INS [dm3] 3R_30433785_INS [dm6]	G	GG	3.252e^-5	0.753	INTRON CG15534
3R	26259404	3R_26259404_SNP [dm3] 3R_30433682_SNP [dm6]	A	C	3.270e^-5	0.753	INTRON CG15534
2L	12720188	2L_12720188_SNP [dm3] 2L_12720188_SNP [dm6]	C	A	3.309e^-5	0.753	INTRON CG5792 & 1 other	TF binding site mE1_TFBS_sens
X	9629504	X_9629504_SNP [dm3] X_9735471_SNP [dm6]	G	C	3.313e^-5	0.753	INTRON Sp1
3R	7032434	3R_7032434_SNP [dm3] 3R_11206712_SNP [dm6]	G	A	3.332e^-5	0.753	INTRON cu
2R	16382712	2R_16382712_INS [dm3] 2R_20495207_INS [dm6]	A	ACATA	3.427e^-5	0.765	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	1570539	3R_1570539_SNP [dm3] 3R_5744817_SNP [dm6]	A	C	3.477e^-5	0.767	INTRON Madm	TF binding site mE1_TFBS_inv
3R	8952419	3R_8952419_SNP [dm3] 3R_13126697_SNP [dm6]	G	A	3.570e^-5	0.779	NON_SYNONYMOUS_CODING 2mit INTRON timeout	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9198669	3L_9198669_SNP [dm3] 3L_9205569_SNP [dm6]	T	G	3.636e^-5	0.78	INTRON Slc45-1	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
3R	1570012	3R_1570012_SNP [dm3] 3R_5744290_SNP [dm6]	G	T	3.657e^-5	0.78	INTRON Madm
3R	7040338	3R_7040338_SNP [dm3] 3R_11214616_SNP [dm6]	T	C	3.787e^-5	0.791	UPSTREAM ZnT86D DOWNSTREAM RpS25 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
X	5921367	X_5921367_SNP [dm3] X_6027334_SNP [dm6]	T	G	3.824e^-5	0.791	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	1570003	3R_1570003_DEL [dm3] 3R_5744281_DEL [dm6]	TTGAAAT	T	3.869e^-5	0.791	INTRON Madm
3R	18395402	3R_18395402_SNP [dm3] 3R_22569680_SNP [dm6]	A	T	3.967e^-5	0.791	UPSTREAM CG33110 INTERGENIC
3R	25074433	3R_25074433_DEL [dm3] 3R_29248711_DEL [dm6]	CTGA	C	3.968e^-5	0.791	UTR_5_PRIME SP1029 INTRON SP1029
3R	7033438	3R_7033438_SNP [dm3] 3R_11207716_SNP [dm6]	C	T	4.114e^-5	0.791	SYNONYMOUS_CODING cu
3R	8940505	3R_8940505_SNP [dm3] 3R_13114783_SNP [dm6]	A	G	4.116e^-5	0.791	INTRON timeout
3R	14236115	3R_14236115_SNP [dm3] 3R_18410393_SNP [dm6]	C	T	4.178e^-5	0.791	SYNONYMOUS_CODING CG10864 UPSTREAM CG31122 INTRON CG31122	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17237991	2R_17237991_SNP [dm3] 2R_21350486_SNP [dm6]	A	G	4.202e^-5	0.791	UTR_5_PRIME CG17974
3R	8946646	3R_8946646_SNP [dm3] 3R_13120924_SNP [dm6]	T	C	4.268e^-5	0.791	INTRON timeout
3L	22005868	3L_22005868_SNP [dm3] 3L_22012768_SNP [dm6]	T	C	4.411e^-5	0.791	INTERGENIC
2L	6130273	2L_6130273_SNP [dm3] 2L_6130273_SNP [dm6]	A	G	4.440e^-5	0.791	SYNONYMOUS_CODING CG42730 UTR_5_PRIME tectonic UPSTREAM CG9222	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	636663	3L_636663_SNP [dm3] 3L_636663_SNP [dm6]	C	T	4.503e^-5	0.791	DOWNSTREAM CR43423 EXON CR43334	regulatory region REDfly_CRMs
3L	10208104	3L_10208104_SNP [dm3] 3L_10215004_SNP [dm6]	C	T	4.515e^-5	0.791	UPSTREAM CG8065 INTERGENIC
3R	6401844	3R_6401844_SNP [dm3] 3R_10576122_SNP [dm6]	T	C	4.626e^-5	0.791	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8671824	X_8671824_SNP [dm3] X_8777791_SNP [dm6]	T	G	4.647e^-5	0.791	INTRON Lim1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	6150519	3L_6150519_SNP [dm3] 3L_6157419_SNP [dm6]	T	C	4.703e^-5	0.791	UPSTREAM CG13297 DOWNSTREAM Cpr65Ay INTERGENIC
2R	1674348	2R_1674348_SNP [dm3] 2R_5786843_SNP [dm6]	T	A	4.736e^-5	0.791	INTERGENIC
3R	21227317	3R_21227317_DEL [dm3] 3R_25401595_DEL [dm6]	GTCGG	G	4.760e^-5	0.791	UPSTREAM Muc96D INTRON Fur1
3R	26115624	3R_26115624_SNP [dm3] 3R_30289902_SNP [dm6]	T	G	4.790e^-5	0.791	INTRON hdc
3L	9198674	3L_9198674_SNP [dm3] 3L_9205574_SNP [dm6]	T	C	4.863e^-5	0.791	INTRON Slc45-1	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
2L	21187664	2L_21187664_SNP [dm3] 2L_21187664_SNP [dm6]	G	A	4.866e^-5	0.791	INTRON Ret
3R	26258965	3R_26258965_SNP [dm3] 3R_30433243_SNP [dm6]	T	C	5.042e^-5	0.791	SYNONYMOUS_CODING CG15534	TF binding site BDTNP1_TFBS_twi
3L	17319237	3L_17319237_SNP [dm3] 3L_17326137_SNP [dm6]	G	A	5.062e^-5	0.791	UPSTREAM CG13725 INTERGENIC
3R	24034451	3R_24034451_SNP [dm3] 3R_28208729_SNP [dm6]	A	G	5.172e^-5	0.791	INTRON CG34354	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	21657622	3R_21657622_SNP [dm3] 3R_25831900_SNP [dm6]	A	G	5.183e^-5	0.791	UPSTREAM Mst57Db & 2 others INTERGENIC
X	4563499	X_4563499_SNP [dm3] X_4669466_SNP [dm6]	A	G	5.267e^-5	0.791	INTRON rap	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	5867251	3R_5867251_SNP [dm3] 3R_10041529_SNP [dm6]	A	G	5.278e^-5	0.791	INTRON Mical
2R	19994027	2R_19994027_SNP [dm3] 2R_24106504_SNP [dm6]	C	T	5.288e^-5	0.791	SYNONYMOUS_CODING enok DOWNSTREAM CG4049	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4013250	3L_4013250_SNP [dm3] 3L_4013250_SNP [dm6]	C	T	5.341e^-5	0.791	INTERGENIC
3R	6987004	3R_6987004_SNP [dm3] 3R_11161282_SNP [dm6]	C	T	5.374e^-5	0.791	SYNONYMOUS_CODING CG4757
2R	16454713	2R_16454713_SNP [dm3] 2R_20567208_SNP [dm6]	C	T	5.441e^-5	0.791	INTRON qsm
3R	15418263	3R_15418263_SNP [dm3] 3R_19592541_SNP [dm6]	A	G	5.463e^-5	0.791	SYNONYMOUS_CODING Dys
2L	6380568	2L_6380568_SNP [dm3] 2L_6380568_SNP [dm6]	A	G	5.565e^-5	0.791	UPSTREAM CG9507 INTRON CG42368
3R	21513204	3R_21513204_SNP [dm3] 3R_25687482_SNP [dm6]	A	C	5.604e^-5	0.791	UPSTREAM CLS INTERGENIC	TF binding site mE1_TFBS_cad
3R	25776954	3R_25776954_SNP [dm3] 3R_29951232_SNP [dm6]	C	T	5.608e^-5	0.791	UTR_3_PRIME TkR99D
3R	24034403	3R_24034403_SNP [dm3] 3R_28208681_SNP [dm6]	G	T	5.609e^-5	0.791	INTRON CG34354	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	6155461	3L_6155461_SNP [dm3] 3L_6162361_SNP [dm6]	T	A	5.624e^-5	0.791	UPSTREAM CG13296 DOWNSTREAM Cpr65Az & 1 other INTERGENIC
2L	14043327	2L_14043327_SNP [dm3] 2L_14043327_SNP [dm6]	T	C	5.687e^-5	0.791	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_dl
X	8327848	X_8327848_SNP [dm3] X_8433815_SNP [dm6]	C	G	5.719e^-5	0.791	UPSTREAM CG32712 DOWNSTREAM CG12125 & 1 other INTERGENIC
2L	20958100	2L_20958100_SNP [dm3] 2L_20958100_SNP [dm6]	G	C	5.741e^-5	0.791	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6152613	3L_6152613_SNP [dm3] 3L_6159513_SNP [dm6]	T	C	5.885e^-5	0.791	UPSTREAM Cpr65Ay INTERGENIC
3R	21657867	3R_21657867_SNP [dm3] 3R_25832145_SNP [dm6]	T	A	5.897e^-5	0.791	UPSTREAM alpha4GT2 & 1 other INTERGENIC
2L	6380597	2L_6380597_SNP [dm3] 2L_6380597_SNP [dm6]	A	G	6.008e^-5	0.791	UPSTREAM CG9507 INTRON CG42368
3R	19078967	3R_19078967_SNP [dm3] 3R_23253245_SNP [dm6]	A	G	6.027e^-5	0.791	SYNONYMOUS_CODING EloA
3R	25776970	3R_25776970_SNP [dm3] 3R_29951248_SNP [dm6]	G	A	6.092e^-5	0.791	UTR_3_PRIME TkR99D
2L	2556482	2L_2556482_SNP [dm3] 2L_2556482_SNP [dm6]	G	A	6.120e^-5	0.791	DOWNSTREAM CR44113 INTERGENIC
3L	9003430	3L_9003430_SNP [dm3] 3L_9010330_SNP [dm6]	G	C	6.123e^-5	0.791	UPSTREAM CG5194 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	7011284	3R_7011284_SNP [dm3] 3R_11185562_SNP [dm6]	T	C	6.151e^-5	0.791	INTERGENIC
3R	24720743	3R_24720743_DEL [dm3] 3R_28895021_DEL [dm6]	TCGA	T	6.158e^-5	0.791	CODON_DELETION Doa INTRON Doa	TF binding site mE1_TFBS_chinmo
2L	9593563	2L_9593563_SNP [dm3] 2L_9593563_SNP [dm6]	G	A	6.162e^-5	0.791	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	14095609	2L_14095609_SNP [dm3] 2L_14095609_SNP [dm6]	G	T	6.170e^-5	0.791	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7000716	3R_7000716_SNP [dm3] 3R_11174994_SNP [dm6]	C	A	6.172e^-5	0.791	UPSTREAM Ugt86Dh INTRON Ugt86Dj
3R	8944551	3R_8944551_SNP [dm3] 3R_13118829_SNP [dm6]	A	T	6.186e^-5	0.791	INTRON timeout
3L	3430815	3L_3430815_SNP [dm3] 3L_3430815_SNP [dm6]	G	A	6.188e^-5	0.791	INTRON eIF5B
2R	1674333	2R_1674333_SNP [dm3] 2R_5786828_SNP [dm6]	A	G	6.231e^-5	0.791	INTERGENIC
X	9727189	X_9727189_SNP [dm3] X_9833156_SNP [dm6]	A	G	6.325e^-5	0.791	INTRON CG32698
3L	2001824	3L_2001824_SNP [dm3] 3L_2001824_SNP [dm6]	A	G	6.396e^-5	0.791	INTERGENIC
3R	7033025	3R_7033025_SNP [dm3] 3R_11207303_SNP [dm6]	G	T	6.399e^-5	0.791	INTRON cu
3L	2040738	3L_2040738_DEL [dm3] 3L_2040738_DEL [dm6]	AAGTGTGAATCTA...	A	6.423e^-5	0.791	INTRON sls
3R	8959929	3R_8959929_SNP [dm3] 3R_13134207_SNP [dm6]	T	G	6.437e^-5	0.791	INTRON timeout & 2 others
3R	18395419	3R_18395419_SNP [dm3] 3R_22569697_SNP [dm6]	A	C	6.445e^-5	0.791	UPSTREAM CG33110 INTERGENIC
2L	4193434	2L_4193434_SNP [dm3] 2L_4193434_SNP [dm6]	G	A	6.518e^-5	0.791	SYNONYMOUS_CODING CG3714
3R	6449570	3R_6449570_SNP [dm3] 3R_10623848_SNP [dm6]	G	A	6.552e^-5	0.791	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14114839	2L_14114839_SNP [dm3] 2L_14114839_SNP [dm6]	C	T	6.579e^-5	0.791	INTERGENIC
3R	9669500	3R_9669500_INS [dm3] 3R_13843778_INS [dm6]	T	TATTTAT	6.635e^-5	0.791	INTERGENIC
3R	14460275	3R_14460275_SNP [dm3] 3R_18634553_SNP [dm6]	T	A	6.671e^-5	0.791	INTRON qin & 1 other
2R	13088093	2R_13088093_SNP [dm3] 2R_17200588_SNP [dm6]	G	T	6.699e^-5	0.791	INTERGENIC
3L	2002383	3L_2002383_SNP [dm3] 3L_2002383_SNP [dm6]	C	T	6.706e^-5	0.791	DOWNSTREAM CG42841 INTERGENIC
3R	23629783	3R_23629783_SNP [dm3] 3R_27804061_SNP [dm6]	C	T	6.754e^-5	0.791	INTRON CG34353
2R	9432235	2R_9432235_SNP [dm3] 2R_13544730_SNP [dm6]	C	G	6.778e^-5	0.791	INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc
3L	2044749	3L_2044749_SNP [dm3] 3L_2044749_SNP [dm6]	A	G	6.796e^-5	0.791	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	24034394	3R_24034394_SNP [dm3] 3R_28208672_SNP [dm6]	G	A	6.809e^-5	0.791	INTRON CG34354	TF binding site BDTNP1_TFBS_hb
2R	13431692	2R_13431692_SNP [dm3] 2R_17544187_SNP [dm6]	G	A	6.844e^-5	0.791	UTR_3_PRIME CG43370 UPSTREAM CG34194	TF binding site BDTNP1_TFBS_dl
3R	8967720	3R_8967720_SNP [dm3] 3R_13141998_SNP [dm6]	C	T	6.872e^-5	0.791	INTRON timeout & 2 others
3R	14460276	3R_14460276_SNP [dm3] 3R_18634554_SNP [dm6]	C	A	6.946e^-5	0.793	INTRON qin & 1 other
3R	24034255	3R_24034255_SNP [dm3] 3R_28208533_SNP [dm6]	A	T	7.019e^-5	0.793	INTRON CG34354	TF binding site mE1_TFBS_chinmo
2R	16807592	2R_16807592_SNP [dm3] 2R_20920087_SNP [dm6]	C	T	7.021e^-5	0.793	INTRON Rx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14618512	2L_14618512_SNP [dm3] 2L_14618512_SNP [dm6]	T	A	7.146e^-5	0.794	INTRON osp & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7033291	3R_7033291_SNP [dm3] 3R_11207569_SNP [dm6]	C	T	7.166e^-5	0.794	SYNONYMOUS_CODING cu
2L	12619289	2L_12619289_SNP [dm3] 2L_12619289_SNP [dm6]	A	T	7.179e^-5	0.794	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
2L	9706577	2L_9706577_SNP [dm3] 2L_9706577_SNP [dm6]	G	C	7.226e^-5	0.794	UPSTREAM CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	13740551	2L_13740551_SNP [dm3] 2L_13740551_SNP [dm6]	C	G	7.241e^-5	0.794	INTERGENIC
3R	21037446	3R_21037446_SNP [dm3] 3R_25211724_SNP [dm6]	C	A	7.402e^-5	0.802	SYNONYMOUS_CODING CG13654	TF binding site mE1_TFBS_cad
X	10044805	X_10044805_SNP [dm3] X_10150772_SNP [dm6]	G	A	7.402e^-5	0.802	INTRON CR44894
3L	9563013	3L_9563013_SNP [dm3] 3L_9569913_SNP [dm6]	G	A	7.443e^-5	0.802	INTRON CG42673
3R	26256565	3R_26256565_DEL [dm3] 3R_30430843_DEL [dm6]	ACCATA	A	7.568e^-5	0.811	INTRON CG15533	TF binding site mE1_TFBS_cad
3L	4713371	3L_4713371_DEL [dm3] 3L_4713371_DEL [dm6]	AGGTAACTCAAATTGATG...	A	7.656e^-5	0.816	INTRON RhoGEF64C
3L	8386522	3L_8386522_SNP [dm3] 3L_8393422_SNP [dm6]	C	G	7.769e^-5	0.817	SYNONYMOUS_CODING Jon66Cii	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	18037736	3R_18037736_SNP [dm3] 3R_22212014_SNP [dm6]	C	A	7.781e^-5	0.817	UTR_5_PRIME Gld2 UPSTREAM Gld2 INTRON SKIP	TF binding site mE1_TFBS_cad
3L	6298654	3L_6298654_SNP [dm3] 3L_6305554_SNP [dm6]	G	A	7.794e^-5	0.817	UPSTREAM CR45113 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
X	15261252	X_15261252_SNP [dm3] X_15367219_SNP [dm6]	C	T	7.885e^-5	0.818	INTRON acj6
3L	636664	3L_636664_SNP [dm3] 3L_636664_SNP [dm6]	A	G	7.897e^-5	0.818	DOWNSTREAM CR43423 EXON CR43334	regulatory region REDfly_CRMs
3L	17580741	3L_17580741_SNP [dm3] 3L_17587641_SNP [dm6]	G	C	8.101e^-5	0.83	INTRON Eip74EF
3L	17580755	3L_17580755_SNP [dm3] 3L_17587655_SNP [dm6]	C	A	8.101e^-5	0.83	INTRON Eip74EF
3R	18439680	3R_18439680_SNP [dm3] 3R_22613958_SNP [dm6]	C	T	8.212e^-5	0.836	SPLICE_SITE_REGION EF-G2 UPSTREAM CG31156 INTRON EF-G2	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2R	1190045	2R_1190045_SNP [dm3] 2R_5302540_SNP [dm6]	A	C	8.265e^-5	0.836	INTERGENIC	transposable element FlyBase
3R	7000748	3R_7000748_SNP [dm3] 3R_11175026_SNP [dm6]	A	T	8.287e^-5	0.836	UPSTREAM Ugt86Dh INTRON Ugt86Dj
2L	12284560	2L_12284560_SNP [dm3] 2L_12284560_SNP [dm6]	G	T	8.360e^-5	0.838	INTRON aret
3R	18439664	3R_18439664_SNP [dm3] 3R_22613942_SNP [dm6]	G	A	8.444e^-5	0.84	UPSTREAM CG31156 INTRON EF-G2	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
3R	19905255	3R_19905255_SNP [dm3] 3R_24079533_SNP [dm6]	A	C	8.460e^-5	0.84	INTRON 4EHP
2L	13924597	2L_13924597_SNP [dm3] 2L_13924597_SNP [dm6]	T	C	8.594e^-5	0.845	INTRON Ance-3
X	2556239	X_2556239_SNP [dm3] X_2662206_SNP [dm6]	G	T	8.605e^-5	0.845	INTRON sgg
3L	4713369	3L_4713369_SNP [dm3] 3L_4713369_SNP [dm6]	G	T	8.700e^-5	0.849	INTRON RhoGEF64C
X	15261358	X_15261358_SNP [dm3] X_15367325_SNP [dm6]	C	A	8.737e^-5	0.849	INTRON acj6
X	14545407	X_14545407_SNP [dm3] X_14651374_SNP [dm6]	C	G	8.825e^-5	0.85	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6147904	3L_6147904_SNP [dm3] 3L_6154804_SNP [dm6]	T	G	8.834e^-5	0.85	EXON CR45421	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22581903	3L_22581903_SNP [dm3] 3L_22588803_SNP [dm6]	A	T	8.993e^-5	0.855	INTRON CG14459	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	9669469	3R_9669469_SNP [dm3] 3R_13843747_SNP [dm6]	T	G	9.079e^-5	0.855	INTERGENIC
3R	26256699	3R_26256699_SNP [dm3] 3R_30430977_SNP [dm6]	C	T	9.100e^-5	0.855	SYNONYMOUS_CODING CG15533	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_cad
3R	26256558	3R_26256558_SNP [dm3] 3R_30430836_SNP [dm6]	T	A	9.246e^-5	0.855	INTRON CG15533	TF binding site mE1_TFBS_cad
3R	6850533	3R_6850533_SNP [dm3] 3R_11024811_SNP [dm6]	A	T	9.501e^-5	0.855	INTRON CG34114
2L	14500933	2L_14500933_SNP [dm3] 2L_14500933_SNP [dm6]	C	G	9.576e^-5	0.855	INTERGENIC	silencer mE1_HDAC_PRE
3L	5227381	3L_5227381_SNP [dm3] 3L_5234281_SNP [dm6]	T	G	9.671e^-5	0.855	UPSTREAM CG4669 INTRON shep
3R	26256639	3R_26256639_SNP [dm3] 3R_30430917_SNP [dm6]	G	A	9.698e^-5	0.855	SYNONYMOUS_CODING CG15533	TF binding site mE1_TFBS_cad
3L	1503155	3L_1503155_SNP [dm3] 3L_1503155_SNP [dm6]	G	T	9.700e^-5	0.855	UPSTREAM pUf68 DOWNSTREAM cue INTRON Psa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3R	8944546	3R_8944546_SNP [dm3] 3R_13118824_SNP [dm6]	C	T	9.705e^-5	0.855	INTRON timeout
3L	2373748	3L_2373748_DEL [dm3] 3L_2373748_DEL [dm6]	AA	A	9.720e^-5	0.855	UTR_5_PRIME CG9004 UPSTREAM mRpL23 DOWNSTREAM CG8993	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10056113	2R_10056113_SNP [dm3] 2R_14168608_SNP [dm6]	T	C	9.799e^-5	0.855	UPSTREAM CG18324 DOWNSTREAM CR44368 & 1 other INTERGENIC
3R	1570013	3R_1570013_SNP [dm3] 3R_5744291_SNP [dm6]	A	C	9.866e^-5	0.855	INTRON Madm
3L	11750138	3L_11750138_SNP [dm3] 3L_11757038_SNP [dm6]	G	A	9.905e^-5	0.855	INTRON CG6024
3R	10838080	3R_10838080_SNP [dm3] 3R_15012358_SNP [dm6]	A	C	9.928e^-5	0.855	INTERGENIC
2L	14628368	2L_14628368_SNP [dm3] 2L_14628368_SNP [dm6]	T	C	9.967e^-5	0.855	INTRON osp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	20909072	2L_20909072_SNP [dm3] 2L_20909072_SNP [dm6]	A	G	9.994e^-5	0.855	INTRON sky & 1 other
3R	24034413	3R_24034413_SNP [dm3] 3R_28208691_SNP [dm6]	T	G	1.002e^-4	0.855	INTRON CG34354	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	7871636	2R_7871636_SNP [dm3] 2R_11984131_SNP [dm6]	C	A	1.003e^-4	0.855	SYNONYMOUS_CODING RnrS	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	21420316	3R_21420316_SNP [dm3] 3R_25594594_SNP [dm6]	A	C	1.011e^-4	0.855	UTR_5_PRIME msi INTRON msi & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14803995	3R_14803995_SNP [dm3] 3R_18978273_SNP [dm6]	A	C	1.012e^-4	0.855	UTR_3_PRIME CG12269 DOWNSTREAM Smu1 & 1 other
3R	14803947	3R_14803947_SNP [dm3] 3R_18978225_SNP [dm6]	C	T	1.014e^-4	0.855	DOWNSTREAM CG12269 & 2 others INTERGENIC
3L	1059533	3L_1059533_SNP [dm3] 3L_1059533_SNP [dm6]	T	G	1.017e^-4	0.855	INTRON bab1
3L	11784011	3L_11784011_SNP [dm3] 3L_11790911_SNP [dm6]	C	A	1.023e^-4	0.855	NON_SYNONYMOUS_CODING CG5964 UPSTREAM Pi3K68D	TF binding site mE1_TFBS_chinmo
2L	7396787	2L_7396787_SNP [dm3] 2L_7396787_SNP [dm6]	G	A	1.034e^-4	0.855	INTRON CG5160
2L	8788479	2L_8788479_SNP [dm3] 2L_8788479_SNP [dm6]	C	T	1.039e^-4	0.855	INTERGENIC
3L	15864893	3L_15864893_SNP [dm3] 3L_15871793_SNP [dm6]	T	G	1.042e^-4	0.855	INTRON pHCl
3L	5282036	3L_5282036_SNP [dm3] 3L_5288936_SNP [dm6]	T	A	1.047e^-4	0.855	INTERGENIC
3R	3494995	3R_3494995_SNP [dm3] 3R_7669273_SNP [dm6]	C	T	1.048e^-4	0.855	INTRON Nlg1
2L	6130306	2L_6130306_SNP [dm3] 2L_6130306_SNP [dm6]	C	G	1.053e^-4	0.855	SYNONYMOUS_CODING CG42730 UTR_5_PRIME tectonic UPSTREAM CG9222	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	2000072	3L_2000072_SNP [dm3] 3L_2000072_SNP [dm6]	G	C	1.058e^-4	0.855	INTERGENIC
2L	7145774	2L_7145774_SNP [dm3] 2L_7145774_SNP [dm6]	C	A	1.062e^-4	0.855	DOWNSTREAM CR44612 INTRON Pvf3
2L	7244005	2L_7244005_SNP [dm3] 2L_7244005_SNP [dm6]	A	C	1.064e^-4	0.855	INTRON Ndae1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6393826	2L_6393826_SNP [dm3] 2L_6393826_SNP [dm6]	C	T	1.067e^-4	0.855	INTRON CG42368
3R	18075602	3R_18075602_SNP [dm3] 3R_22249880_SNP [dm6]	C	A	1.073e^-4	0.855	INTRON SKIP
3R	4242862	3R_4242862_SNP [dm3] 3R_8417140_SNP [dm6]	C	T	1.075e^-4	0.855	INTRON CG45263
3R	15363285	3R_15363285_SNP [dm3] 3R_19537563_SNP [dm6]	C	G	1.085e^-4	0.855	INTRON Dys
3R	6202481	3R_6202481_SNP [dm3] 3R_10376759_SNP [dm6]	G	C	1.085e^-4	0.855	INTRON Rfx	TF binding site BDTNP1_TFBS_twi
2R	16807597	2R_16807597_SNP [dm3] 2R_20920092_SNP [dm6]	A	G	1.094e^-4	0.855	INTRON Rx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12051595	3L_12051595_SNP [dm3] 3L_12058495_SNP [dm6]	G	T	1.105e^-4	0.855	INTRON rols
3R	23270644	3R_23270644_SNP [dm3] 3R_27444922_SNP [dm6]	T	G	1.112e^-4	0.855	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	7022329	2R_7022329_SNP [dm3] 2R_11134824_SNP [dm6]	C	T	1.118e^-4	0.855	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	2001604	3L_2001604_SNP [dm3] 3L_2001604_SNP [dm6]	A	G	1.118e^-4	0.855	INTERGENIC
X	18438146	X_18438146_SNP [dm3] X_18544113_SNP [dm6]	T	G	1.122e^-4	0.855	INTRON Bx
2L	22036096	2L_22036096_SNP [dm3] 2L_22036096_SNP [dm6]	T	A	1.123e^-4	0.855	INTERGENIC
2R	18724227	2R_18724227_SNP [dm3] 2R_22836704_SNP [dm6]	A	T	1.128e^-4	0.855	UPSTREAM CG9825 DOWNSTREAM CG12490 INTERGENIC
2L	5904050	2L_5904050_SNP [dm3] 2L_5904050_SNP [dm6]	T	C	1.136e^-4	0.855	NON_SYNONYMOUS_CODING CG9021 DOWNSTREAM CR43808	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	22601974	3L_22601974_SNP [dm3] 3L_22608874_SNP [dm6]	G	A	1.136e^-4	0.855	INTRON CG14459
3L	4956723	3L_4956723_SNP [dm3] 3L_4956723_SNP [dm6]	T	C	1.143e^-4	0.855	SYNONYMOUS_CODING Con
3R	25159259	3R_25159259_SNP [dm3] 3R_29333537_SNP [dm6]	A	C	1.144e^-4	0.855	INTERGENIC
2R	7563060	2R_7563060_SNP [dm3] 2R_11675555_SNP [dm6]	T	C	1.146e^-4	0.855	UPSTREAM Tret1-2 DOWNSTREAM Tret1-1 INTRON Roc2	TF binding site mE1_TFBS_HSA
2R	8492945	2R_8492945_SNP [dm3] 2R_12605440_SNP [dm6]	G	A	1.158e^-4	0.855	INTRON Amph
2L	1353720	2L_1353720_SNP [dm3] 2L_1353720_SNP [dm6]	A	T	1.159e^-4	0.855	SYNONYMOUS_CODING CG5561 UPSTREAM CG5556 DOWNSTREAM CG31924
2R	18436639	2R_18436639_SNP [dm3] 2R_22549134_SNP [dm6]	A	C	1.161e^-4	0.855	UPSTREAM CG6018 INTRON px
2L	2248949	2L_2248949_SNP [dm3] 2L_2248949_SNP [dm6]	T	G	1.172e^-4	0.855	INTERGENIC
3L	3924085	3L_3924085_INS [dm3] 3L_3924085_INS [dm6]	A	AGAAGTAAAAA...	1.176e^-4	0.855	INTRON Eip63F-1
2L	14014336	2L_14014336_SNP [dm3] 2L_14014336_SNP [dm6]	C	A	1.178e^-4	0.855	INTRON bgm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25522287	3R_25522287_SNP [dm3] 3R_29696565_SNP [dm6]	G	A	1.179e^-4	0.855	UTR_3_PRIME dmrt99B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2249095	2L_2249095_SNP [dm3] 2L_2249095_SNP [dm6]	T	G	1.182e^-4	0.855	INTERGENIC
3L	2040523	3L_2040523_SNP [dm3] 3L_2040523_SNP [dm6]	A	G	1.196e^-4	0.855	SYNONYMOUS_CODING sls
3L	2266158	3L_2266158_SNP [dm3] 3L_2266158_SNP [dm6]	A	C	1.198e^-4	0.855	UPSTREAM CG13806 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	15963370	2L_15963370_SNP [dm3] 2L_15963370_SNP [dm6]	A	T	1.208e^-4	0.855	UPSTREAM beat-Ib INTERGENIC
X	7307941	X_7307941_SNP [dm3] X_7413908_SNP [dm6]	C	T	1.211e^-4	0.855	NON_SYNONYMOUS_CODING CG42705 DOWNSTREAM CG42704
3L	6152612	3L_6152612_SNP [dm3] 3L_6159512_SNP [dm6]	G	A	1.213e^-4	0.855	UPSTREAM Cpr65Ay INTERGENIC
3R	24660135	3R_24660135_SNP [dm3] 3R_28834413_SNP [dm6]	C	A	1.221e^-4	0.855	NON_SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo
2L	18911081	2L_18911081_SNP [dm3] 2L_18911081_SNP [dm6]	T	C	1.224e^-4	0.855	INTERGENIC
2R	10056115	2R_10056115_SNP [dm3] 2R_14168610_SNP [dm6]	C	T	1.230e^-4	0.855	UPSTREAM CG18324 DOWNSTREAM CR44368 & 1 other INTERGENIC
3R	8959921	3R_8959921_SNP [dm3] 3R_13134199_SNP [dm6]	C	G	1.230e^-4	0.855	INTRON timeout & 2 others
3R	23428534	3R_23428534_SNP [dm3] 3R_27602812_SNP [dm6]	A	G	1.244e^-4	0.855	SYNONYMOUS_CODING dsd
3L	6876359	3L_6876359_SNP [dm3] 3L_6883259_SNP [dm6]	C	G	1.250e^-4	0.855	DOWNSTREAM CR45416 INTERGENIC
2R	9975881	2R_9975881_SNP [dm3] 2R_14088376_SNP [dm6]	A	G	1.258e^-4	0.855	INTRON Prosap
3R	17966296	3R_17966296_SNP [dm3] 3R_22140574_SNP [dm6]	T	A	1.258e^-4	0.855	INTRON SKIP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	3924092	3L_3924092_SNP [dm3] 3L_3924092_SNP [dm6]	T	A	1.261e^-4	0.855	INTRON Eip63F-1
3L	3924071	3L_3924071_SNP [dm3] 3L_3924071_SNP [dm6]	A	C	1.262e^-4	0.855	INTRON Eip63F-1
2R	7020866	2R_7020866_SNP [dm3] 2R_11133361_SNP [dm6]	T	A	1.266e^-4	0.855	INTERGENIC
2L	20967186	2L_20967186_SNP [dm3] 2L_20967186_SNP [dm6]	C	T	1.274e^-4	0.855	UTR_3_PRIME CG42238	TF binding site BDTNP1_TFBS_twi
3R	21943548	3R_21943548_SNP [dm3] 3R_26117826_SNP [dm6]	A	C	1.278e^-4	0.855	INTRON CG31324
3R	26020786	3R_26020786_SNP [dm3] 3R_30195064_SNP [dm6]	A	G	1.286e^-4	0.855	NON_SYNONYMOUS_CODING CG15531
3L	2044737	3L_2044737_SNP [dm3] 3L_2044737_SNP [dm6]	G	A	1.290e^-4	0.855	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9424240	2L_9424240_SNP [dm3] 2L_9424240_SNP [dm6]	G	T	1.300e^-4	0.855	SYNONYMOUS_CODING Mco1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21036549	3R_21036549_SNP [dm3] 3R_25210827_SNP [dm6]	G	A	1.306e^-4	0.855	INTRON CG13654
3R	21036561	3R_21036561_SNP [dm3] 3R_25210839_SNP [dm6]	A	C	1.306e^-4	0.855	INTRON CG13654
2R	10517491	2R_10517491_SNP [dm3] 2R_14629986_SNP [dm6]	T	C	1.317e^-4	0.855	SYNONYMOUS_CODING CG10131	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18117482	2L_18117482_DEL [dm3] 2L_18117482_DEL [dm6]	TTT	T	1.319e^-4	0.855	INTERGENIC
3R	19078961	3R_19078961_SNP [dm3] 3R_23253239_SNP [dm6]	A	C	1.325e^-4	0.855	SYNONYMOUS_CODING EloA
X	5449568	X_5449568_SNP [dm3] X_5555535_SNP [dm6]	C	T	1.325e^-4	0.855	INTRON Vsx2	TF binding site mE1_TFBS_cnc mE1_TFBS_Kr
3L	19937356	3L_19937356_SNP [dm3] 3L_19944256_SNP [dm6]	T	G	1.327e^-4	0.855	INTRON Ac76E
3R	8946544	3R_8946544_DEL [dm3] 3R_13120822_DEL [dm6]	CGCAAAAAGTGAAGTGGCAA...	G	1.328e^-4	0.855	INTRON timeout
3R	21657863	3R_21657863_DEL [dm3] 3R_25832141_DEL [dm6]	TT	T	1.336e^-4	0.855	UPSTREAM alpha4GT2 & 1 other INTERGENIC
3R	21943651	3R_21943651_SNP [dm3] 3R_26117929_SNP [dm6]	A	G	1.342e^-4	0.855	INTRON CG31324
3R	20887509	3R_20887509_SNP [dm3] 3R_25061787_SNP [dm6]	A	T	1.346e^-4	0.855	NON_SYNONYMOUS_CODING Unc-13-4B
3R	5867832	3R_5867832_SNP [dm3] 3R_10042110_SNP [dm6]	G	A	1.358e^-4	0.855	INTRON Mical	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
2L	14612686	2L_14612686_SNP [dm3] 2L_14612686_SNP [dm6]	G	A	1.365e^-4	0.855	UPSTREAM CR43411 INTRON osp	regulatory region REDfly_CRMs
3L	22530724	3L_22530724_SNP [dm3] 3L_22537624_SNP [dm6]	C	A	1.365e^-4	0.855	INTERGENIC
3R	26465612	3R_26465612_INS [dm3] 3R_30639890_INS [dm6]	G	GGGAC	1.366e^-4	0.855	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	5796894	3L_5796894_SNP [dm3] 3L_5803794_SNP [dm6]	A	C	1.369e^-4	0.855	UTR_5_PRIME CG42272 INTRON S6k & 1 other	TF binding site BDTNP1_TFBS_twi
2L	14246782	2L_14246782_SNP [dm3] 2L_14246782_SNP [dm6]	G	A	1.371e^-4	0.855	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23716640	3R_23716640_SNP [dm3] 3R_27890918_SNP [dm6]	A	G	1.374e^-4	0.855	INTRON CG34353
3L	10462468	3L_10462468_SNP [dm3] 3L_10469368_SNP [dm6]	C	A	1.381e^-4	0.855	DOWNSTREAM S-Lap3 INTERGENIC
3L	13534456	3L_13534456_SNP [dm3] 3L_13541356_SNP [dm6]	C	T	1.381e^-4	0.855	INTRON bru-3
2R	9349647	2R_9349647_DEL [dm3] 2R_13462142_DEL [dm6]	GC	G	1.382e^-4	0.855	INTRON arr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7259039	2L_7259039_SNP [dm3] 2L_7259039_SNP [dm6]	T	C	1.385e^-4	0.855	DOWNSTREAM CG31909 INTRON Wnt4
3R	1565426	3R_1565426_SNP [dm3] 3R_5739704_SNP [dm6]	G	T	1.399e^-4	0.855	NON_SYNONYMOUS_CODING Sym
3L	14430654	3L_14430654_SNP [dm3] 3L_14437554_SNP [dm6]	A	G	1.405e^-4	0.855	INTRON bbg
2L	8651430	2L_8651430_SNP [dm3] 2L_8651430_SNP [dm6]	A	T	1.414e^-4	0.855	INTRON Sema-1a
3L	2158881	3L_2158881_SNP [dm3] 3L_2158881_SNP [dm6]	G	A	1.418e^-4	0.855	SYNONYMOUS_CODING CG15822	TF binding site mE1_TFBS_inv
2L	6509754	2L_6509754_SNP [dm3] 2L_6509754_SNP [dm6]	C	T	1.422e^-4	0.855	INTRON CG31637
2L	987481	2L_987481_SNP [dm3] 2L_987481_SNP [dm6]	C	A	1.430e^-4	0.855	DOWNSTREAM CR44801 INTERGENIC
3L	7109363	3L_7109363_SNP [dm3] 3L_7116263_SNP [dm6]	G	A	1.432e^-4	0.855	INTRON form3
3L	9100627	3L_9100627_SNP [dm3] 3L_9107527_SNP [dm6]	T	G	1.434e^-4	0.855	INTRON bol
X	16436243	X_16436243_SNP [dm3] X_16542210_SNP [dm6]	G	C	1.434e^-4	0.855	UTR_3_PRIME CG9902
3R	23636288	3R_23636288_SNP [dm3] 3R_27810566_SNP [dm6]	T	C	1.434e^-4	0.855	INTRON CG34353	TF binding site mE1_TFBS_chinmo
3R	23420807	3R_23420807_SNP [dm3] 3R_27595085_SNP [dm6]	C	A	1.434e^-4	0.855	INTRON CG5639	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3L	9100635	3L_9100635_SNP [dm3] 3L_9107535_SNP [dm6]	A	T	1.441e^-4	0.855	INTRON bol
3R	9669507	3R_9669507_DEL [dm3] 3R_13843785_DEL [dm6]	ATCTAACCT	A	1.447e^-4	0.855	INTERGENIC
3L	2002034	3L_2002034_SNP [dm3] 3L_2002034_SNP [dm6]	A	G	1.448e^-4	0.855	INTERGENIC
2L	14314644	2L_14314644_DEL [dm3] 2L_14314644_DEL [dm6]	ACCCCAGGAAA...	A	1.450e^-4	0.855	INTRON wb	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	18266039	3R_18266039_SNP [dm3] 3R_22440317_SNP [dm6]	A	G	1.451e^-4	0.855	NON_SYNONYMOUS_CODING CG12499	TF binding site mE1_TFBS_cad
3R	26600800	3R_26600800_SNP [dm3] 3R_30775078_SNP [dm6]	T	G	1.452e^-4	0.855	INTRON zfh1	TF binding site mE1_TFBS_cad
2L	4314192	2L_4314192_DEL [dm3] 2L_4314192_DEL [dm6]	AA	A	1.455e^-4	0.855	INTRON tutl
3R	18991258	3R_18991258_SNP [dm3] 3R_23165536_SNP [dm6]	C	G	1.460e^-4	0.855	INTERGENIC
3R	20992513	3R_20992513_SNP [dm3] 3R_25166791_SNP [dm6]	A	T	1.461e^-4	0.855	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11662392	2R_11662392_SNP [dm3] 2R_15774887_SNP [dm6]	A	G	1.464e^-4	0.855	SYNONYMOUS_CODING Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16454549	2R_16454549_SNP [dm3] 2R_20567044_SNP [dm6]	G	T	1.467e^-4	0.855	INTRON qsm
2L	15331985	2L_15331985_SNP [dm3] 2L_15331985_SNP [dm6]	G	A	1.476e^-4	0.855	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	6876378	3L_6876378_DEL [dm3] 3L_6883278_DEL [dm6]	TT	T	1.477e^-4	0.855	DOWNSTREAM CR45416 INTERGENIC
2R	16530121	2R_16530121_SNP [dm3] 2R_20642616_SNP [dm6]	G	A	1.478e^-4	0.855	SYNONYMOUS_CODING CG33786 UTR_3_PRIME CG33785 DOWNSTREAM maf-S & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21505716	3R_21505716_SNP [dm3] 3R_25679994_SNP [dm6]	G	T	1.479e^-4	0.855	SYNONYMOUS_CODING CG4743 UPSTREAM CG5028 DOWNSTREAM CG5039	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17922462	2L_17922462_SNP [dm3] 2L_17922462_SNP [dm6]	C	G	1.483e^-4	0.855	INTERGENIC
3R	21758499	3R_21758499_SNP [dm3] 3R_25932777_SNP [dm6]	A	T	1.491e^-4	0.855	DOWNSTREAM CR34024 INTRON CCAP-R
3R	20229397	3R_20229397_SNP [dm3] 3R_24403675_SNP [dm6]	A	G	1.493e^-4	0.855	INTRON nAChRalpha1
3L	10208050	3L_10208050_DEL [dm3] 3L_10214950_DEL [dm6]	AC	T	1.497e^-4	0.855	UPSTREAM CG8065 INTERGENIC
3L	22599229	3L_22599229_INS [dm3] 3L_22606129_INS [dm6]	G	GG	1.499e^-4	0.855	UPSTREAM CG6914 INTRON CG14459	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15852386	3L_15852386_SNP [dm3] 3L_15859286_SNP [dm6]	G	T	1.500e^-4	0.855	INTRON pHCl
X	6276486	X_6276486_SNP [dm3] X_6382453_SNP [dm6]	C	T	1.519e^-4	0.864	INTERGENIC
2L	8322981	2L_8322981_SNP [dm3] 2L_8322981_SNP [dm6]	G	A	1.532e^-4	0.868	INTRON CG7781	TF binding site mE1_TFBS_cad
3L	2041418	3L_2041418_SNP [dm3] 3L_2041418_SNP [dm6]	A	G	1.553e^-4	0.87	SYNONYMOUS_CODING sls
2L	3680867	2L_3680867_SNP [dm3] 2L_3680867_SNP [dm6]	G	A	1.554e^-4	0.87	INTRON CG34340
3R	7036949	3R_7036949_SNP [dm3] 3R_11211227_SNP [dm6]	G	A	1.558e^-4	0.87	UTR_3_PRIME Tctp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9669591	3R_9669591_SNP [dm3] 3R_13843869_SNP [dm6]	T	A	1.564e^-4	0.87	INTERGENIC
3R	17846074	3R_17846074_SNP [dm3] 3R_22020352_SNP [dm6]	C	T	1.566e^-4	0.87	SYNONYMOUS_CODING CG6455 UPSTREAM CG6439	TF binding site mE1_TFBS_HSA
3R	22957320	3R_22957320_SNP [dm3] 3R_27131598_SNP [dm6]	C	T	1.569e^-4	0.87	INTRON CG6051	TF binding site mE1_TFBS_HSA
2L	2556727	2L_2556727_SNP [dm3] 2L_2556727_SNP [dm6]	G	T	1.574e^-4	0.87	DOWNSTREAM CR44113 INTERGENIC
X	16436246	X_16436246_SNP [dm3] X_16542213_SNP [dm6]	G	T	1.576e^-4	0.87	UTR_3_PRIME CG9902
2L	7049251	2L_7049251_SNP [dm3] 2L_7049251_SNP [dm6]	C	T	1.590e^-4	0.87	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3L	2025625	3L_2025625_SNP [dm3] 3L_2025625_SNP [dm6]	G	A	1.597e^-4	0.87	INTERGENIC
3R	6432589	3R_6432589_SNP [dm3] 3R_10606867_SNP [dm6]	G	T	1.603e^-4	0.87	INTRON hth	TF binding site mE1_TFBS_HSA
3R	20804928	3R_20804928_SNP [dm3] 3R_24979206_SNP [dm6]	T	G	1.605e^-4	0.87	INTERGENIC
2R	7473199	2R_7473199_SNP [dm3] 2R_11585694_SNP [dm6]	T	A	1.612e^-4	0.87	SYNONYMOUS_CODING tou
3L	7086928	3L_7086928_SNP [dm3] 3L_7093828_SNP [dm6]	C	A	1.612e^-4	0.87	UTR_3_PRIME Cpr65Ec UPSTREAM form3	TF binding site mE1_TFBS_HSA
X	7086324	X_7086324_SNP [dm3] X_7192291_SNP [dm6]	T	A	1.614e^-4	0.87	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sbb
3L	22963383	3L_22963383_SNP [dm3] 3L_22970283_SNP [dm6]	A	C	1.625e^-4	0.87	INTERGENIC
2R	4684800	2R_4684800_INS [dm3] 2R_8797295_INS [dm6]	T	TGTATGT	1.627e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17907428	3R_17907428_SNP [dm3] 3R_22081706_SNP [dm6]	C	G	1.631e^-4	0.87	INTRON CG13408
2L	14628374	2L_14628374_SNP [dm3] 2L_14628374_SNP [dm6]	A	G	1.632e^-4	0.87	INTRON osp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	6987352	3R_6987352_SNP [dm3] 3R_11161630_SNP [dm6]	A	T	1.632e^-4	0.87	SYNONYMOUS_CODING CG4757	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6987358	3R_6987358_SNP [dm3] 3R_11161636_SNP [dm6]	G	C	1.632e^-4	0.87	SYNONYMOUS_CODING CG4757	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5671551	3L_5671551_SNP [dm3] 3L_5678451_SNP [dm6]	T	G	1.649e^-4	0.873	UPSTREAM sif INTRON sif
3R	8961521	3R_8961521_SNP [dm3] 3R_13135799_SNP [dm6]	G	C	1.657e^-4	0.873	INTRON timeout & 2 others
3L	2092151	3L_2092151_SNP [dm3] 3L_2092151_SNP [dm6]	T	C	1.663e^-4	0.873	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7691149	3L_7691149_SNP [dm3] 3L_7698049_SNP [dm6]	A	G	1.666e^-4	0.873	SYNONYMOUS_CODING Ank2 INTRON CG32373	TF binding site mE1_TFBS_sens
3L	17527028	3L_17527028_SNP [dm3] 3L_17533928_SNP [dm6]	C	A	1.667e^-4	0.873	INTRON Nedd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22533946	3L_22533946_SNP [dm3] 3L_22540846_SNP [dm6]	G	T	1.667e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22987009	3R_22987009_SNP [dm3] 3R_27161287_SNP [dm6]	G	T	1.673e^-4	0.873	UTR_5_PRIME CG5909
3L	15057400	3L_15057400_SNP [dm3] 3L_15064300_SNP [dm6]	G	A	1.691e^-4	0.873	INTRON Sytbeta	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	16435123	3L_16435123_SNP [dm3] 3L_16442023_SNP [dm6]	G	T	1.692e^-4	0.873	INTRON CG33158 & 1 other
2L	4955497	2L_4955497_SNP [dm3] 2L_4955497_SNP [dm6]	G	T	1.693e^-4	0.873	UPSTREAM Marcal1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3R	24632262	3R_24632262_SNP [dm3] 3R_28806540_SNP [dm6]	T	A	1.698e^-4	0.873	UPSTREAM CheB98a INTERGENIC
2L	5899820	2L_5899820_SNP [dm3] 2L_5899820_SNP [dm6]	A	C	1.700e^-4	0.873	DOWNSTREAM CR44579 INTERGENIC
2L	5899842	2L_5899842_SNP [dm3] 2L_5899842_SNP [dm6]	G	A	1.700e^-4	0.873	DOWNSTREAM CR44579 INTERGENIC
3R	24632274	3R_24632274_SNP [dm3] 3R_28806552_SNP [dm6]	A	T	1.722e^-4	0.877	UPSTREAM CheB98a INTERGENIC
2R	12357014	2R_12357014_SNP [dm3] 2R_16469509_SNP [dm6]	G	C	1.725e^-4	0.877	DOWNSTREAM CheB53b INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	17820344	X_17820344_INS [dm3] X_17926311_INS [dm6]	T	TT	1.729e^-4	0.877	UTR_3_PRIME Sh
3L	2043687	3L_2043687_SNP [dm3] 3L_2043687_SNP [dm6]	T	A	1.734e^-4	0.877	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	5867585	3R_5867585_SNP [dm3] 3R_10041863_SNP [dm6]	C	T	1.734e^-4	0.877	INTRON Mical	TF binding site mE1_TFBS_HSA
3L	6876454	3L_6876454_SNP [dm3] 3L_6883354_SNP [dm6]	A	G	1.735e^-4	0.877	EXON CR45416
3R	17569064	3R_17569064_SNP [dm3] 3R_21743342_SNP [dm6]	A	G	1.753e^-4	0.881	SYNONYMOUS_CODING CG5849 UTR_3_PRIME CG5849	TF binding site mE1_TFBS_sens
3R	20316838	3R_20316838_SNP [dm3] 3R_24491116_SNP [dm6]	C	G	1.768e^-4	0.881	UTR_3_PRIME nAChRalpha2
3R	25125916	3R_25125916_SNP [dm3] 3R_29300194_SNP [dm6]	C	G	1.771e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	16178648	2R_16178648_SNP [dm3] 2R_20291143_SNP [dm6]	A	G	1.773e^-4	0.881	DOWNSTREAM CkIIbeta2 INTRON Cpr56F
3L	17992878	3L_17992878_INS [dm3] 3L_17999778_INS [dm6]	T	TA	1.776e^-4	0.881	UTR_5_PRIME Eip75B INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	17927922	2L_17927922_SNP [dm3] 2L_17927922_SNP [dm6]	G	A	1.776e^-4	0.881	INTERGENIC
3R	7067765	3R_7067765_SNP [dm3] 3R_11242043_SNP [dm6]	A	C	1.781e^-4	0.881	SYNONYMOUS_CODING scpr-A DOWNSTREAM CG17734	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3430805	3L_3430805_DEL [dm3] 3L_3430805_DEL [dm6]	CTTT	C	1.792e^-4	0.881	INTRON eIF5B
X	10285082	X_10285082_INS [dm3] X_10391049_INS [dm6]	C	CT	1.792e^-4	0.881	INTRON flw
2L	8653418	2L_8653418_SNP [dm3] 2L_8653418_SNP [dm6]	T	A	1.793e^-4	0.881	INTRON Sema-1a
2L	12419630	2L_12419630_DEL [dm3] 2L_12419630_DEL [dm6]	TT	T	1.796e^-4	0.881	INTRON vir-1
3R	21895413	3R_21895413_SNP [dm3] 3R_26069691_SNP [dm6]	G	A	1.804e^-4	0.881	DOWNSTREAM CR44950 INTERGENIC
3R	18264198	3R_18264198_SNP [dm3] 3R_22438476_SNP [dm6]	A	G	1.804e^-4	0.881	INTERGENIC
3L	8971866	3L_8971866_SNP [dm3] 3L_8978766_SNP [dm6]	A	G	1.814e^-4	0.881	INTRON CG5644	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	25352217	3R_25352217_SNP [dm3] 3R_29526495_SNP [dm6]	C	T	1.814e^-4	0.881	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10208106	3L_10208106_SNP [dm3] 3L_10215006_SNP [dm6]	G	C	1.819e^-4	0.881	UPSTREAM CG8065 INTERGENIC
3R	9041061	3R_9041061_SNP [dm3] 3R_13215339_SNP [dm6]	A	T	1.827e^-4	0.881	UPSTREAM CG8483 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9629534	X_9629534_INS [dm3] X_9735501_INS [dm6]	G	GG	1.831e^-4	0.881	INTRON Sp1	TF binding site BDTNP1_TFBS_dl
2L	11322516	2L_11322516_SNP [dm3] 2L_11322516_SNP [dm6]	C	G	1.833e^-4	0.881	INTERGENIC
3L	1996313	3L_1996313_SNP [dm3] 3L_1996313_SNP [dm6]	C	T	1.843e^-4	0.882	INTERGENIC
3L	17524841	3L_17524841_SNP [dm3] 3L_17531741_SNP [dm6]	C	T	1.847e^-4	0.882	INTRON Nedd4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	1589571	3R_1589571_SNP [dm3] 3R_5763849_SNP [dm6]	A	G	1.847e^-4	0.882	INTRON CG2082	transposable element FlyBase
3L	13642640	3L_13642640_SNP [dm3] 3L_13649540_SNP [dm6]	A	C	1.856e^-4	0.882	INTRON bru-3
3L	9003727	3L_9003727_SNP [dm3] 3L_9010627_SNP [dm6]	T	A	1.871e^-4	0.882	UPSTREAM CG5194 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12619290	2L_12619290_SNP [dm3] 2L_12619290_SNP [dm6]	T	C	1.878e^-4	0.882	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
2R	18240210	2R_18240210_SNP [dm3] 2R_22352705_SNP [dm6]	G	A	1.887e^-4	0.882	INTRON Liprin-gamma
3R	8927428	3R_8927428_SNP [dm3] 3R_13101706_SNP [dm6]	A	G	1.888e^-4	0.882	INTRON timeout
3R	8944428	3R_8944428_SNP [dm3] 3R_13118706_SNP [dm6]	T	G	1.912e^-4	0.882	INTRON timeout
X	15797193	X_15797193_SNP [dm3] X_15903160_SNP [dm6]	T	C	1.912e^-4	0.882	INTRON shi
3R	21741689	3R_21741689_SNP [dm3] 3R_25915967_SNP [dm6]	A	C	1.916e^-4	0.882	INTRON CG42235
3L	4715244	3L_4715244_SNP [dm3] 3L_4715244_SNP [dm6]	G	A	1.926e^-4	0.882	INTRON RhoGEF64C
3L	13642644	3L_13642644_SNP [dm3] 3L_13649544_SNP [dm6]	A	G	1.927e^-4	0.882	INTRON bru-3
3L	5432751	3L_5432751_SNP [dm3] 3L_5439651_SNP [dm6]	C	A	1.935e^-4	0.882	UTR_3_PRIME CG34391
2L	15332023	2L_15332023_SNP [dm3] 2L_15332023_SNP [dm6]	G	C	1.939e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	17525170	3L_17525170_SNP [dm3] 3L_17532070_SNP [dm6]	A	G	1.970e^-4	0.882	INTRON Nedd4	TF binding site BDTNP1_TFBS_dl
3L	10209508	3L_10209508_SNP [dm3] 3L_10216408_SNP [dm6]	C	T	1.981e^-4	0.882	SYNONYMOUS_CODING CG8065
3R	8961585	3R_8961585_SNP [dm3] 3R_13135863_SNP [dm6]	G	T	1.987e^-4	0.882	INTRON timeout & 2 others
3L	9100618	3L_9100618_SNP [dm3] 3L_9107518_SNP [dm6]	A	T	1.987e^-4	0.882	INTRON bol
3L	3912095	3L_3912095_SNP [dm3] 3L_3912095_SNP [dm6]	A	G	1.992e^-4	0.882	INTRON Eip63F-1
3R	24665344	3R_24665344_SNP [dm3] 3R_28839622_SNP [dm6]	A	G	1.992e^-4	0.882	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4999533	2L_4999533_SNP [dm3] 2L_4999533_SNP [dm6]	G	A	2.000e^-4	0.882	UPSTREAM Rtnl1 INTRON Rtnl1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	9443875	3R_9443875_SNP [dm3] 3R_13618153_SNP [dm6]	T	A	2.010e^-4	0.882	EXON CR45680
3L	12650809	3L_12650809_SNP [dm3] 3L_12657709_SNP [dm6]	G	T	2.010e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	1453513	3L_1453513_DEL [dm3] 3L_1453513_DEL [dm6]	GACCA	G	2.013e^-4	0.882	INTRON Ptp61F
3L	10210580	3L_10210580_SNP [dm3] 3L_10217480_SNP [dm6]	C	T	2.016e^-4	0.882	DOWNSTREAM CG8065 INTERGENIC
3R	15162919	3R_15162919_INS [dm3] 3R_19337197_INS [dm6]	G	GGTG	2.022e^-4	0.882	INTERGENIC	TF binding site mE1_TFBS_cad
2R	18436629	2R_18436629_INS [dm3] 2R_22549124_INS [dm6]	C	CCCCACTCC	2.023e^-4	0.882	UPSTREAM CG6018 INTRON px
3L	22157569	3L_22157569_SNP [dm3] 3L_22164469_SNP [dm6]	G	C	2.023e^-4	0.882	INTRON olf413	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	834784	3L_834784_SNP [dm3] 3L_834784_SNP [dm6]	A	G	2.024e^-4	0.882	SYNONYMOUS_CODING CG42553 UPSTREAM CG42554	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	7648468	2L_7648468_SNP [dm3] 2L_7648468_SNP [dm6]	C	A	2.031e^-4	0.882	INTRON Slob
2L	2917259	2L_2917259_INS [dm3] 2L_2917259_INS [dm6]	A	AC	2.035e^-4	0.882	INTRON lilli	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7049252	2L_7049252_SNP [dm3] 2L_7049252_SNP [dm6]	G	A	2.039e^-4	0.882	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3R	23605840	3R_23605840_SNP [dm3] 3R_27780118_SNP [dm6]	T	G	2.055e^-4	0.882	INTRON CG34353
3R	8952481	3R_8952481_SNP [dm3] 3R_13126759_SNP [dm6]	A	G	2.055e^-4	0.882	SYNONYMOUS_CODING 2mit INTRON timeout	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9173749	2L_9173749_SNP [dm3] 2L_9173749_SNP [dm6]	G	A	2.062e^-4	0.882	INTRON tai	TF binding site mE1_TFBS_kn
X	2302507	X_2302507_SNP [dm3] X_2408474_SNP [dm6]	T	A	2.062e^-4	0.882	DOWNSTREAM CG12496 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	16775508	2R_16775508_SNP [dm3] 2R_20888003_SNP [dm6]	G	A	2.065e^-4	0.882	INTRON otp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15332020	2L_15332020_SNP [dm3] 2L_15332020_SNP [dm6]	A	T	2.076e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	10109888	X_10109888_SNP [dm3] X_10215855_SNP [dm6]	C	A	2.087e^-4	0.882	SYNONYMOUS_CODING CG2962 UTR_3_PRIME l_1_G0230	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14038380	3R_14038380_SNP [dm3] 3R_18212658_SNP [dm6]	C	A	2.090e^-4	0.882	SYNONYMOUS_CODING CG7985
3R	14807261	3R_14807261_SNP [dm3] 3R_18981539_SNP [dm6]	A	C	2.105e^-4	0.882	UTR_5_PRIME dnk UPSTREAM Smu1 INTRON dnk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23718803	3R_23718803_SNP [dm3] 3R_27893081_SNP [dm6]	G	A	2.106e^-4	0.882	INTRON CG34353
2L	3980122	2L_3980122_SNP [dm3] 2L_3980122_SNP [dm6]	G	A	2.110e^-4	0.882	INTRON fred
X	10589020	X_10589020_SNP [dm3] X_10694987_SNP [dm6]	A	G	2.115e^-4	0.882	INTRON X11Lbeta
3R	8986215	3R_8986215_SNP [dm3] 3R_13160493_SNP [dm6]	T	A	2.119e^-4	0.882	INTRON timeout
2L	1720652	2L_1720652_SNP [dm3] 2L_1720652_SNP [dm6]	G	C	2.121e^-4	0.882	INTRON Rim2
3L	9634827	3L_9634827_SNP [dm3] 3L_9641727_SNP [dm6]	C	T	2.121e^-4	0.882	SYNONYMOUS_CODING CG18180 INTRON fry	TF binding site mE1_TFBS_cad
X	21862913	X_21862913_SNP [dm3] X_22461077_SNP [dm6]	C	A	2.131e^-4	0.882	INTRON CG14619	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3L	10209236	3L_10209236_SNP [dm3] 3L_10216136_SNP [dm6]	G	A	2.140e^-4	0.882	NON_SYNONYMOUS_CODING CG8065
3L	2527687	3L_2527687_SNP [dm3] 3L_2527687_SNP [dm6]	T	G	2.176e^-4	0.882	UPSTREAM CG32295 INTRON Spn
2L	8006553	2L_8006553_SNP [dm3] 2L_8006553_SNP [dm6]	C	T	2.179e^-4	0.882	NON_SYNONYMOUS_CODING Spn28Dc	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10210613	3L_10210613_SNP [dm3] 3L_10217513_SNP [dm6]	T	C	2.181e^-4	0.882	DOWNSTREAM CG8065 & 1 other INTERGENIC
3R	21223741	3R_21223741_SNP [dm3] 3R_25398019_SNP [dm6]	G	A	2.187e^-4	0.882	SYNONYMOUS_CODING Muc96D INTRON Fur1
X	17178997	X_17178997_SNP [dm3] X_17284964_SNP [dm6]	A	T	2.189e^-4	0.882	UPSTREAM CG8661 DOWNSTREAM Fim INTRON CG5445
2L	17671193	2L_17671193_SNP [dm3] 2L_17671193_SNP [dm6]	A	G	2.194e^-4	0.882	INTRON CadN
2L	6331571	2L_6331571_SNP [dm3] 2L_6331571_SNP [dm6]	C	T	2.202e^-4	0.882	UTR_3_PRIME PDZ-GEF
X	14909226	X_14909226_SNP [dm3] X_15015193_SNP [dm6]	C	T	2.217e^-4	0.882	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
2L	17890082	2L_17890082_SNP [dm3] 2L_17890082_SNP [dm6]	A	G	2.217e^-4	0.882	INTERGENIC
X	4707004	X_4707004_SNP [dm3] X_4812971_SNP [dm6]	A	T	2.224e^-4	0.882	INTERGENIC
3R	26257831	3R_26257831_SNP [dm3] 3R_30432109_SNP [dm6]	T	C	2.228e^-4	0.882	NON_SYNONYMOUS_CODING CG15534 DOWNSTREAM CG15533	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16178623	2R_16178623_SNP [dm3] 2R_20291118_SNP [dm6]	G	T	2.229e^-4	0.882	DOWNSTREAM CkIIbeta2 INTRON Cpr56F
2L	13423097	2L_13423097_SNP [dm3] 2L_13423097_SNP [dm6]	A	G	2.238e^-4	0.882	START_GAINED CG42784 UTR_5_PRIME CG42784
2L	7243896	2L_7243896_SNP [dm3] 2L_7243896_SNP [dm6]	T	G	2.238e^-4	0.882	INTRON Ndae1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	4715273	3L_4715273_SNP [dm3] 3L_4715273_SNP [dm6]	A	G	2.248e^-4	0.882	INTRON RhoGEF64C
2R	9431943	2R_9431943_INS [dm3] 2R_13544438_INS [dm6]	T	TTTACAAT	2.248e^-4	0.882	INTRON CG6145	TF binding site BDTNP1_TFBS_twi
2R	18780412	2R_18780412_SNP [dm3] 2R_22892889_SNP [dm6]	A	C	2.255e^-4	0.882	INTRON MED23	TF binding site mE1_TFBS_cad
3R	6218789	3R_6218789_SNP [dm3] 3R_10393067_SNP [dm6]	A	G	2.261e^-4	0.882	INTRON cwo
3L	9562634	3L_9562634_SNP [dm3] 3L_9569534_SNP [dm6]	A	G	2.264e^-4	0.882	INTRON CG42673
2L	5961822	2L_5961822_SNP [dm3] 2L_5961822_SNP [dm6]	A	G	2.269e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21469323	3R_21469323_SNP [dm3] 3R_25643601_SNP [dm6]	T	A	2.279e^-4	0.882	INTRON jigr1
3R	15029834	3R_15029834_SNP [dm3] 3R_19204112_SNP [dm6]	C	A	2.280e^-4	0.882	INTERGENIC
2L	8657673	2L_8657673_SNP [dm3] 2L_8657673_SNP [dm6]	T	G	2.284e^-4	0.882	INTRON Sema-1a
2L	6830586	2L_6830586_SNP [dm3] 2L_6830586_SNP [dm6]	G	A	2.284e^-4	0.882	INTRON sens-2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12308165	2L_12308165_SNP [dm3] 2L_12308165_SNP [dm6]	T	C	2.291e^-4	0.882	INTRON aret
2L	14618459	2L_14618459_SNP [dm3] 2L_14618459_SNP [dm6]	T	C	2.294e^-4	0.882	SYNONYMOUS_CODING Adhr UTR_3_PRIME Adh INTRON osp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7000821	3R_7000821_SNP [dm3] 3R_11175099_SNP [dm6]	G	T	2.294e^-4	0.882	UPSTREAM Ugt86Dh INTRON Ugt86Dj
3R	4543850	3R_4543850_SNP [dm3] 3R_8718128_SNP [dm6]	G	A	2.297e^-4	0.882	UTR_3_PRIME CG8116 INTRON Cks85A
2L	12597141	2L_12597141_SNP [dm3] 2L_12597141_SNP [dm6]	G	A	2.301e^-4	0.882	INTRON nub
2L	16594265	2L_16594265_SNP [dm3] 2L_16594265_SNP [dm6]	A	C	2.303e^-4	0.882	INTRON CG42389
3L	9563201	3L_9563201_SNP [dm3] 3L_9570101_SNP [dm6]	C	T	2.304e^-4	0.882	INTRON CG42673
2L	2598651	2L_2598651_SNP [dm3] 2L_2598651_SNP [dm6]	G	A	2.306e^-4	0.882	EXON CR44790
2L	13074590	2L_13074590_DEL [dm3] 2L_13074590_DEL [dm6]	TC	G	2.314e^-4	0.882	INTERGENIC	TF binding site mE1_TFBS_inv
3L	3785978	3L_3785978_SNP [dm3] 3L_3785978_SNP [dm6]	C	G	2.314e^-4	0.882	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	5830327	3R_5830327_SNP [dm3] 3R_10004605_SNP [dm6]	C	T	2.318e^-4	0.882	INTRON Mical	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	11338802	3L_11338802_SNP [dm3] 3L_11345702_SNP [dm6]	C	T	2.320e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	10955813	3R_10955813_SNP [dm3] 3R_15130091_SNP [dm6]	A	T	2.321e^-4	0.882	DOWNSTREAM mir-2493 INTRON CG42788
2L	7048703	2L_7048703_DEL [dm3] 2L_7048703_DEL [dm6]	AG	A	2.321e^-4	0.882	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	23420509	3R_23420509_DEL [dm3] 3R_27594787_DEL [dm6]	GGAGGGGATTGGAGCCGGGG...	G	2.322e^-4	0.882	INTRON CG5639	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2L	14045631	2L_14045631_SNP [dm3] 2L_14045631_SNP [dm6]	G	A	2.325e^-4	0.882	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	5227263	3L_5227263_SNP [dm3] 3L_5234163_SNP [dm6]	C	T	2.327e^-4	0.882	UPSTREAM CG4669 INTRON shep
3L	23439736	3L_23439736_SNP [dm3] 3L_23446636_SNP [dm6]	T	A	2.349e^-4	0.882	INTERGENIC
3R	9815627	3R_9815627_SNP [dm3] 3R_13989905_SNP [dm6]	C	G	2.351e^-4	0.882	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1903274	3L_1903274_INS [dm3] 3L_1903274_INS [dm6]	A	ATATAATAAGATATA...	2.352e^-4	0.882	INTRON CG1887
X	16821565	X_16821565_SNP [dm3] X_16927532_SNP [dm6]	T	A	2.373e^-4	0.882	INTRON CG4928
2L	7238830	2L_7238830_SNP [dm3] 2L_7238830_SNP [dm6]	A	C	2.375e^-4	0.882	INTRON Ndae1
3R	8997008	3R_8997008_SNP [dm3] 3R_13171286_SNP [dm6]	C	T	2.377e^-4	0.882	INTERGENIC
2R	9430811	2R_9430811_SNP [dm3] 2R_13543306_SNP [dm6]	C	A	2.384e^-4	0.882	INTRON CG6145
3L	11452133	3L_11452133_SNP [dm3] 3L_11459033_SNP [dm6]	G	T	2.390e^-4	0.882	SYNONYMOUS_CODING CG7551 UPSTREAM CG12289	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12829559	3L_12829559_SNP [dm3] 3L_12836459_SNP [dm6]	T	C	2.400e^-4	0.882	INTRON CG10960	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	10208779	3L_10208779_SNP [dm3] 3L_10215679_SNP [dm6]	C	A	2.409e^-4	0.882	UTR_5_PRIME CG8065
2L	6130171	2L_6130171_SNP [dm3] 2L_6130171_SNP [dm6]	T	G	2.416e^-4	0.882	SYNONYMOUS_CODING CG42730 UTR_5_PRIME tectonic UPSTREAM CG9222	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9432317	2R_9432317_SNP [dm3] 2R_13544812_SNP [dm6]	G	C	2.421e^-4	0.882	INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc
3L	3607252	3L_3607252_SNP [dm3] 3L_3607252_SNP [dm6]	T	C	2.423e^-4	0.882	INTRON Eip63E	TF binding site mE1_TFBS_zfh1
X	16223497	X_16223497_SNP [dm3] X_16329464_SNP [dm6]	A	G	2.429e^-4	0.882	DOWNSTREAM CalpC INTRON CG9919	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24720418	3R_24720418_SNP [dm3] 3R_28894696_SNP [dm6]	T	G	2.437e^-4	0.882	NON_SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_chinmo
2R	11451200	2R_11451200_SNP [dm3] 2R_15563695_SNP [dm6]	T	C	2.438e^-4	0.882	INTRON CG8195	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9875236	3L_9875236_DEL [dm3] 3L_9882136_DEL [dm6]	TT	T	2.447e^-4	0.882	INTRON CG34382	TF binding site mE1_TFBS_chinmo
X	17179015	X_17179015_SNP [dm3] X_17284982_SNP [dm6]	T	A	2.450e^-4	0.882	UPSTREAM CG8661 DOWNSTREAM Fim INTRON CG5445
2L	17051634	2L_17051634_SNP [dm3] 2L_17051634_SNP [dm6]	T	A	2.470e^-4	0.882	INTERGENIC
3L	8957998	3L_8957998_SNP [dm3] 3L_8964898_SNP [dm6]	C	G	2.476e^-4	0.882	UPSTREAM CG5660 DOWNSTREAM CG5653 INTERGENIC
X	12570779	X_12570779_INS [dm3] X_12676746_INS [dm6]	T	TC	2.482e^-4	0.882	INTRON Tis11	TF binding site BDTNP1_TFBS_dl
3L	5564366	3L_5564366_SNP [dm3] 3L_5571266_SNP [dm6]	T	G	2.491e^-4	0.882	INTRON Msr-110
2L	14612613	2L_14612613_SNP [dm3] 2L_14612613_SNP [dm6]	A	T	2.501e^-4	0.882	UPSTREAM CR43411 INTRON osp	regulatory region REDfly_CRMs
2R	16807541	2R_16807541_SNP [dm3] 2R_20920036_SNP [dm6]	A	G	2.511e^-4	0.882	INTRON Rx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26259124	3R_26259124_SNP [dm3] 3R_30433402_SNP [dm6]	C	G	2.514e^-4	0.882	INTRON CG15534
2R	8904919	2R_8904919_SNP [dm3] 2R_13017414_SNP [dm6]	C	T	2.516e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	15626505	3L_15626505_SNP [dm3] 3L_15633405_SNP [dm6]	A	G	2.520e^-4	0.882	UPSTREAM comm3 INTRON comm3
3R	26189710	3R_26189710_SNP [dm3] 3R_30363988_SNP [dm6]	C	T	2.527e^-4	0.882	UTR_3_PRIME hdc
3L	2870967	3L_2870967_DEL [dm3] 3L_2870967_DEL [dm6]	GGGG	G	2.536e^-4	0.882	CODON_DELETION CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17297140	3R_17297140_SNP [dm3] 3R_21471418_SNP [dm6]	A	G	2.536e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	19299117	X_19299117_SNP [dm3] X_19405084_SNP [dm6]	T	C	2.551e^-4	0.882	INTRON kek5
X	22044420	X_22044420_SNP [dm3] X_22642584_SNP [dm6]	C	T	2.552e^-4	0.882	INTERGENIC
X	17179004	X_17179004_SNP [dm3] X_17284971_SNP [dm6]	C	G	2.553e^-4	0.882	UPSTREAM CG8661 DOWNSTREAM Fim INTRON CG5445	insulator Insulator_Class_II.mE01
X	4706940	X_4706940_SNP [dm3] X_4812907_SNP [dm6]	C	A	2.555e^-4	0.882	INTERGENIC
X	5921486	X_5921486_SNP [dm3] X_6027453_SNP [dm6]	G	C	2.562e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	11431884	3L_11431884_SNP [dm3] 3L_11438784_SNP [dm6]	G	A	2.573e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20821505	3R_20821505_SNP [dm3] 3R_24995783_SNP [dm6]	G	T	2.573e^-4	0.882	INTRON tnc
3R	22786954	3R_22786954_SNP [dm3] 3R_26961232_SNP [dm6]	C	T	2.585e^-4	0.882	UTR_3_PRIME Tsp97E DOWNSTREAM Tsp97E
3R	8939333	3R_8939333_SNP [dm3] 3R_13113611_SNP [dm6]	A	T	2.585e^-4	0.882	INTRON timeout
3L	9169977	3L_9169977_DEL [dm3] 3L_9176877_DEL [dm6]	TT	T	2.590e^-4	0.882	INTRON Rdl
3L	10986865	3L_10986865_SNP [dm3] 3L_10993765_SNP [dm6]	A	G	2.593e^-4	0.882	INTRON klu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8653400	2L_8653400_SNP [dm3] 2L_8653400_SNP [dm6]	C	T	2.605e^-4	0.882	INTRON Sema-1a
3L	10467321	3L_10467321_SNP [dm3] 3L_10474221_SNP [dm6]	A	G	2.606e^-4	0.882	INTERGENIC
3R	26256381	3R_26256381_SNP [dm3] 3R_30430659_SNP [dm6]	G	A	2.607e^-4	0.882	SYNONYMOUS_CODING CG15533	TF binding site mE1_TFBS_cad
3R	4308215	3R_4308215_SNP [dm3] 3R_8482493_SNP [dm6]	T	C	2.608e^-4	0.882	INTERGENIC
3L	4119792	3L_4119792_SNP [dm3] 3L_4119792_SNP [dm6]	G	T	2.610e^-4	0.882	INTRON Chd64	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	5941839	2L_5941839_SNP [dm3] 2L_5941839_SNP [dm6]	G	A	2.614e^-4	0.882	UPSTREAM CR45289 DOWNSTREAM Sfp26Ad INTERGENIC
3L	2002059	3L_2002059_SNP [dm3] 3L_2002059_SNP [dm6]	T	C	2.614e^-4	0.882	INTERGENIC
3R	21691431	3R_21691431_SNP [dm3] 3R_25865709_SNP [dm6]	G	T	2.620e^-4	0.882	INTRON CG5890
X	13317739	X_13317739_SNP [dm3] X_13423706_SNP [dm6]	A	T	2.634e^-4	0.882	INTERGENIC
3R	9015499	3R_9015499_SNP [dm3] 3R_13189777_SNP [dm6]	G	A	2.634e^-4	0.882	DOWNSTREAM CG14380 INTERGENIC
3L	9398929	3L_9398929_SNP [dm3] 3L_9405829_SNP [dm6]	C	T	2.642e^-4	0.882	SYNONYMOUS_CODING Cpr67B DOWNSTREAM CG4022
2R	8904922	2R_8904922_SNP [dm3] 2R_13017417_SNP [dm6]	A	C	2.643e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	4715281	3L_4715281_SNP [dm3] 3L_4715281_SNP [dm6]	T	C	2.658e^-4	0.882	INTRON RhoGEF64C
2L	5130384	2L_5130384_SNP [dm3] 2L_5130384_SNP [dm6]	A	C	2.660e^-4	0.882	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad
3L	9207177	3L_9207177_SNP [dm3] 3L_9214077_SNP [dm6]	G	T	2.664e^-4	0.882	SYNONYMOUS_CODING CG4476	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2403716	X_2403716_SNP [dm3] X_2509683_SNP [dm6]	C	T	2.665e^-4	0.882	INTRON trol
3L	14003674	3L_14003674_SNP [dm3] 3L_14010574_SNP [dm6]	T	C	2.666e^-4	0.882	SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad
X	2403742	X_2403742_SNP [dm3] X_2509709_SNP [dm6]	T	A	2.676e^-4	0.882	INTRON trol
2R	19997463	2R_19997463_SNP [dm3] 2R_24109940_SNP [dm6]	A	G	2.677e^-4	0.882	SYNONYMOUS_CODING CG4049
X	15261232	X_15261232_SNP [dm3] X_15367199_SNP [dm6]	G	T	2.683e^-4	0.882	INTRON acj6
3R	24665365	3R_24665365_SNP [dm3] 3R_28839643_SNP [dm6]	A	G	2.693e^-4	0.882	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10841523	3R_10841523_SNP [dm3] 3R_15015801_SNP [dm6]	T	G	2.696e^-4	0.882	SYNONYMOUS_CODING CG14861
3R	17570587	3R_17570587_SNP [dm3] 3R_21744865_SNP [dm6]	A	G	2.699e^-4	0.882	UPSTREAM CG31343 DOWNSTREAM CG5849 INTERGENIC
2L	3089756	2L_3089756_DEL [dm3] 2L_3089756_DEL [dm6]	ACCA	A	2.704e^-4	0.882	INTRON toc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1996233	3L_1996233_SNP [dm3] 3L_1996233_SNP [dm6]	A	T	2.705e^-4	0.882	INTERGENIC
3L	10151900	3L_10151900_SNP [dm3] 3L_10158800_SNP [dm6]	G	C	2.707e^-4	0.882	INTRON dpr10
X	8327909	X_8327909_DEL [dm3] X_8433876_DEL [dm6]	ACC	G	2.711e^-4	0.882	UPSTREAM CG32712 DOWNSTREAM CG12125 & 1 other INTERGENIC
3L	2044248	3L_2044248_SNP [dm3] 3L_2044248_SNP [dm6]	C	T	2.712e^-4	0.882	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19142421	X_19142421_SNP [dm3] X_19248388_SNP [dm6]	T	C	2.717e^-4	0.882	UPSTREAM Hs3st-B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7726224	2L_7726224_SNP [dm3] 2L_7726224_SNP [dm6]	T	A	2.721e^-4	0.882	UTR_5_PRIME CG13795 DOWNSTREAM CG13796
3L	10986926	3L_10986926_SNP [dm3] 3L_10993826_SNP [dm6]	G	A	2.726e^-4	0.882	INTRON klu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10780933	3L_10780933_SNP [dm3] 3L_10787833_SNP [dm6]	C	T	2.726e^-4	0.882	INTERGENIC
2L	12726953	2L_12726953_SNP [dm3] 2L_12726953_SNP [dm6]	T	C	2.736e^-4	0.882	SYNONYMOUS_CODING MRP
2L	11838090	2L_11838090_SNP [dm3] 2L_11838090_SNP [dm6]	T	G	2.749e^-4	0.882	DOWNSTREAM Sfp33A4 & 1 other INTRON Pde1c
3L	2004481	3L_2004481_SNP [dm3] 3L_2004481_SNP [dm6]	G	A	2.757e^-4	0.882	DOWNSTREAM CG42841 INTRON CG42841
2L	13874456	2L_13874456_SNP [dm3] 2L_13874456_SNP [dm6]	T	A	2.759e^-4	0.882	INTRON CenG1A
3R	8955280	3R_8955280_SNP [dm3] 3R_13129558_SNP [dm6]	T	C	2.760e^-4	0.882	INTRON timeout & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	21862921	X_21862921_SNP [dm3] X_22461085_SNP [dm6]	A	T	2.760e^-4	0.882	INTRON CG14619	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3L	5564365	3L_5564365_SNP [dm3] 3L_5571265_SNP [dm6]	T	G	2.763e^-4	0.882	INTRON Msr-110
2L	6380474	2L_6380474_SNP [dm3] 2L_6380474_SNP [dm6]	T	A	2.771e^-4	0.882	UPSTREAM CG9507 INTRON CG42368
3L	22600666	3L_22600666_SNP [dm3] 3L_22607566_SNP [dm6]	G	A	2.775e^-4	0.882	DOWNSTREAM CG6914 INTRON CG14459
3L	15169325	3L_15169325_SNP [dm3] 3L_15176225_SNP [dm6]	C	T	2.785e^-4	0.882	INTERGENIC
3L	2652955	3L_2652955_SNP [dm3] 3L_2652955_SNP [dm6]	T	C	2.785e^-4	0.882	SYNONYMOUS_CODING Snup UTR_5_PRIME CG42304 UPSTREAM CG42304	TF binding site mE1_TFBS_cad
2R	5696924	2R_5696924_SNP [dm3] 2R_9809419_SNP [dm6]	G	A	2.785e^-4	0.882	INTERGENIC
3L	2001172	3L_2001172_SNP [dm3] 3L_2001172_SNP [dm6]	A	G	2.787e^-4	0.882	INTERGENIC
3L	15628408	3L_15628408_SNP [dm3] 3L_15635308_SNP [dm6]	T	A	2.791e^-4	0.882	UPSTREAM comm3 INTRON comm3
2R	8904893	2R_8904893_SNP [dm3] 2R_13017388_SNP [dm6]	C	G	2.792e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	13074600	2L_13074600_SNP [dm3] 2L_13074600_SNP [dm6]	C	G	2.794e^-4	0.882	INTERGENIC
X	3003034	X_3003034_SNP [dm3] X_3109001_SNP [dm6]	A	T	2.801e^-4	0.882	INTRON kirre
2L	1453105	2L_1453105_SNP [dm3] 2L_1453105_SNP [dm6]	G	A	2.802e^-4	0.882	INTERGENIC
X	11027813	X_11027813_SNP [dm3] X_11133780_SNP [dm6]	G	C	2.813e^-4	0.882	INTRON Klp10A	TF binding site mE1_TFBS_cad
3R	6999693	3R_6999693_SNP [dm3] 3R_11173971_SNP [dm6]	C	T	2.818e^-4	0.882	SYNONYMOUS_CODING Ugt86Dj
3L	12828504	3L_12828504_SNP [dm3] 3L_12835404_SNP [dm6]	T	A	2.824e^-4	0.882	INTRON CG10960	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sbb
X	18374285	X_18374285_SNP [dm3] X_18480252_SNP [dm6]	T	C	2.824e^-4	0.882	SYNONYMOUS_CODING Hayan UPSTREAM CG32547 EXON CR45714
2R	7637062	2R_7637062_SNP [dm3] 2R_11749557_SNP [dm6]	T	C	2.825e^-4	0.882	INTERGENIC
3L	10209537	3L_10209537_SNP [dm3] 3L_10216437_SNP [dm6]	A	G	2.827e^-4	0.882	SYNONYMOUS_CODING CG8065
X	18401073	X_18401073_SNP [dm3] X_18507040_SNP [dm6]	T	C	2.832e^-4	0.882	INTRON Ggt-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk
3R	26256779	3R_26256779_SNP [dm3] 3R_30431057_SNP [dm6]	A	T	2.838e^-4	0.882	INTRON CG15533	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_cad
3L	6589126	3L_6589126_SNP [dm3] 3L_6596026_SNP [dm6]	C	G	2.846e^-4	0.882	SYNONYMOUS_CODING ndl
3L	2040759	3L_2040759_SNP [dm3] 3L_2040759_SNP [dm6]	T	C	2.858e^-4	0.882	INTRON sls
X	13317656	X_13317656_SNP [dm3] X_13423623_SNP [dm6]	C	G	2.865e^-4	0.882	INTERGENIC
2L	14094710	2L_14094710_SNP [dm3] 2L_14094710_SNP [dm6]	C	A	2.866e^-4	0.882	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	21657881	3R_21657881_SNP [dm3] 3R_25832159_SNP [dm6]	A	T	2.871e^-4	0.882	UPSTREAM alpha4GT2 & 1 other INTERGENIC
3R	25074289	3R_25074289_SNP [dm3] 3R_29248567_SNP [dm6]	G	A	2.878e^-4	0.882	INTRON SP1029
3L	2870925	3L_2870925_SNP [dm3] 3L_2870925_SNP [dm6]	C	T	2.880e^-4	0.882	SYNONYMOUS_CODING CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	21733125	3R_21733125_SNP [dm3] 3R_25907403_SNP [dm6]	A	G	2.882e^-4	0.882	UPSTREAM CR43259 INTRON CG42235
2L	14522799	2L_14522799_SNP [dm3] 2L_14522799_SNP [dm6]	G	C	2.885e^-4	0.882	INTERGENIC
2R	16180691	2R_16180691_INS [dm3] 2R_20293186_INS [dm6]	A	ACA	2.885e^-4	0.882	UPSTREAM CR44639 DOWNSTREAM CR44638 INTERGENIC
3R	2470846	3R_2470846_SNP [dm3] 3R_6645124_SNP [dm6]	A	T	2.890e^-4	0.882	UPSTREAM CG1315 INTERGENIC	TF binding site mE1_TFBS_HSA
X	18908739	X_18908739_SNP [dm3] X_19014706_SNP [dm6]	A	C	2.896e^-4	0.882	INTRON CG43759	TF binding site mE1_TFBS_cad
2L	14356912	2L_14356912_SNP [dm3] 2L_14356912_SNP [dm6]	A	G	2.899e^-4	0.882	UPSTREAM Rab14 & 1 other INTRON Rab14
2R	13679538	2R_13679538_SNP [dm3] 2R_17792033_SNP [dm6]	A	G	2.902e^-4	0.882	SYNONYMOUS_CODING CG5033 UPSTREAM Dhit
3L	2527701	3L_2527701_INS [dm3] 3L_2527701_INS [dm6]	T	TAAATGAGACAC...	2.903e^-4	0.882	UPSTREAM CG32295 INTRON Spn
2R	19998106	2R_19998106_SNP [dm3] 2R_24110583_SNP [dm6]	C	T	2.917e^-4	0.882	SYNONYMOUS_CODING CG4049
2R	20002231	2R_20002231_SNP [dm3] 2R_24114708_SNP [dm6]	C	T	2.917e^-4	0.882	START_GAINED CG3253 UTR_5_PRIME CG3253 UPSTREAM CG4049	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx
2R	20003420	2R_20003420_SNP [dm3] 2R_24115897_SNP [dm6]	T	G	2.917e^-4	0.882	UPSTREAM CG3257 INTRON CG3253	TF binding site mE1_TFBS_sens
2R	20003613	2R_20003613_SNP [dm3] 2R_24116090_SNP [dm6]	G	T	2.917e^-4	0.882	UPSTREAM CG3257 INTRON CG3253
2R	20003784	2R_20003784_SNP [dm3] 2R_24116261_SNP [dm6]	C	T	2.917e^-4	0.882	SYNONYMOUS_CODING CG3253 UPSTREAM CG3257
3L	18739867	3L_18739867_SNP [dm3] 3L_18746767_SNP [dm6]	C	T	2.919e^-4	0.882	SYNONYMOUS_CODING Nufip DOWNSTREAM MED11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	17087913	2L_17087913_SNP [dm3] 2L_17087913_SNP [dm6]	C	A	2.924e^-4	0.882	SYNONYMOUS_CODING CG12620
2L	13874454	2L_13874454_SNP [dm3] 2L_13874454_SNP [dm6]	A	G	2.930e^-4	0.882	INTRON CenG1A
X	10044940	X_10044940_SNP [dm3] X_10150907_SNP [dm6]	C	T	2.931e^-4	0.882	INTRON CR44894
3L	22510796	3L_22510796_SNP [dm3] 3L_22517696_SNP [dm6]	C	T	2.937e^-4	0.882	DOWNSTREAM mir-957 INTERGENIC
2R	20000332	2R_20000332_SNP [dm3] 2R_24112809_SNP [dm6]	A	C	2.940e^-4	0.882	NON_SYNONYMOUS_CODING CG4049	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7052253	2L_7052253_SNP [dm3] 2L_7052253_SNP [dm6]	T	C	2.943e^-4	0.882	SYNONYMOUS_CODING milt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12400978	3L_12400978_SNP [dm3] 3L_12407878_SNP [dm6]	C	G	2.947e^-4	0.882	INTRON CG32103	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	5433198	3L_5433198_SNP [dm3] 3L_5440098_SNP [dm6]	A	C	2.952e^-4	0.882	UTR_3_PRIME CG34391 DOWNSTREAM CG34391
3L	13607516	3L_13607516_SNP [dm3] 3L_13614416_SNP [dm6]	C	G	2.961e^-4	0.882	INTRON bru-3
X	5921439	X_5921439_SNP [dm3] X_6027406_SNP [dm6]	A	G	2.965e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	26261376	3R_26261376_SNP [dm3] 3R_30435654_SNP [dm6]	T	C	2.967e^-4	0.882	SPLICE_SITE_REGION CG15537 DOWNSTREAM CG15534 INTRON CG15537
3L	2040786	3L_2040786_SNP [dm3] 3L_2040786_SNP [dm6]	T	A	2.970e^-4	0.882	SYNONYMOUS_CODING sls
3L	12844018	3L_12844018_SNP [dm3] 3L_12850918_SNP [dm6]	T	C	2.982e^-4	0.882	SYNONYMOUS_CODING Wbp2 UPSTREAM CG10948	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	1589088	3R_1589088_SNP [dm3] 3R_5763366_SNP [dm6]	T	C	2.982e^-4	0.882	INTRON CG2082
2L	6144360	2L_6144360_SNP [dm3] 2L_6144360_SNP [dm6]	A	C	2.983e^-4	0.882	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_chinmo
2R	14823338	2R_14823338_SNP [dm3] 2R_18935833_SNP [dm6]	G	C	2.985e^-4	0.882	INTRON sano
2R	4268402	2R_4268402_SNP [dm3] 2R_8380897_SNP [dm6]	C	G	2.988e^-4	0.882	INTRON pdm3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6829813	2L_6829813_SNP [dm3] 2L_6829813_SNP [dm6]	A	G	2.999e^-4	0.882	INTRON sens-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10301421	3R_10301421_DEL [dm3] 3R_14475699_DEL [dm6]	TTATAGCC	T	3.004e^-4	0.882	INTRON cv-c	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21083395	3R_21083395_SNP [dm3] 3R_25257673_SNP [dm6]	C	A	3.014e^-4	0.882	NON_SYNONYMOUS_CODING Nup358	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	3551952	2L_3551952_SNP [dm3] 2L_3551952_SNP [dm6]	A	T	3.017e^-4	0.882	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14003641	3L_14003641_SNP [dm3] 3L_14010541_SNP [dm6]	T	A	3.017e^-4	0.882	SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad
X	18164952	X_18164952_SNP [dm3] X_18270919_SNP [dm6]	C	T	3.023e^-4	0.882	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	17664509	2R_17664509_SNP [dm3] 2R_21777004_SNP [dm6]	A	G	3.026e^-4	0.882	INTERGENIC
2R	19014227	2R_19014227_SNP [dm3] 2R_23126704_SNP [dm6]	G	A	3.028e^-4	0.882	UPSTREAM Klp59C DOWNSTREAM CR44455 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17193577	2L_17193577_SNP [dm3] 2L_17193577_SNP [dm6]	A	G	3.028e^-4	0.882	SYNONYMOUS_CODING beat-IIIc
2R	17290977	2R_17290977_SNP [dm3] 2R_21403472_SNP [dm6]	A	C	3.029e^-4	0.882	INTRON Sdc
X	4567141	X_4567141_SNP [dm3] X_4673108_SNP [dm6]	A	G	3.031e^-4	0.882	INTRON rap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19700264	X_19700264_SNP [dm3] X_19806231_SNP [dm6]	T	C	3.040e^-4	0.882	INTERGENIC
2L	8322990	2L_8322990_DEL [dm3] 2L_8322990_DEL [dm6]	CAAGTAAACTATC...	C	3.045e^-4	0.882	INTRON CG7781	TF binding site mE1_TFBS_cad
3R	15253332	3R_15253332_SNP [dm3] 3R_19427610_SNP [dm6]	A	T	3.048e^-4	0.882	INTRON CG31221
3L	21916473	3L_21916473_SNP [dm3] 3L_21923373_SNP [dm6]	A	G	3.051e^-4	0.882	UTR_3_PRIME mub INTRON mub
3R	14451799	3R_14451799_SNP [dm3] 3R_18626077_SNP [dm6]	T	A	3.062e^-4	0.882	INTRON qin
3L	8796818	3L_8796818_SNP [dm3] 3L_8803718_SNP [dm6]	C	T	3.064e^-4	0.882	SYNONYMOUS_CODING CG32023 DOWNSTREAM CG34426
3R	11848046	3R_11848046_SNP [dm3] 3R_16022324_SNP [dm6]	G	A	3.066e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
2R	18772313	2R_18772313_SNP [dm3] 2R_22884790_SNP [dm6]	T	C	3.069e^-4	0.882	NON_SYNONYMOUS_CODING CG3499	TF binding site mE1_TFBS_cad
3L	1004156	3L_1004156_SNP [dm3] 3L_1004156_SNP [dm6]	T	C	3.074e^-4	0.882	INTRON trio
X	2292962	X_2292962_SNP [dm3] X_2398929_SNP [dm6]	A	G	3.085e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	19059486	3R_19059486_SNP [dm3] 3R_23233764_SNP [dm6]	T	G	3.105e^-4	0.882	INTRON CG4467
2L	8323034	2L_8323034_SNP [dm3] 2L_8323034_SNP [dm6]	A	G	3.106e^-4	0.882	INTRON CG7781	TF binding site mE1_TFBS_cad
3R	14256844	3R_14256844_SNP [dm3] 3R_18431122_SNP [dm6]	T	C	3.112e^-4	0.882	DOWNSTREAM fru INTRON fru
3R	24122028	3R_24122028_SNP [dm3] 3R_28296306_SNP [dm6]	C	G	3.119e^-4	0.882	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	14126462	3L_14126462_SNP [dm3] 3L_14133362_SNP [dm6]	T	G	3.119e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	13250123	3R_13250123_SNP [dm3] 3R_17424401_SNP [dm6]	T	C	3.120e^-4	0.882	INTERGENIC
3R	22958744	3R_22958744_SNP [dm3] 3R_27133022_SNP [dm6]	C	A	3.123e^-4	0.882	INTRON CG6051
2R	7510141	2R_7510141_SNP [dm3] 2R_11622636_SNP [dm6]	G	A	3.128e^-4	0.882	SYNONYMOUS_CODING CG9005	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10208789	3L_10208789_SNP [dm3] 3L_10215689_SNP [dm6]	T	C	3.129e^-4	0.882	UTR_5_PRIME CG8065
3R	24033989	3R_24033989_SNP [dm3] 3R_28208267_SNP [dm6]	A	G	3.135e^-4	0.882	INTRON CG34354	TF binding site mE1_TFBS_chinmo
3L	15467712	3L_15467712_INS [dm3] 3L_15474612_INS [dm6]	T	TT	3.138e^-4	0.882	UPSTREAM CG7804 INTERGENIC
2L	2917195	2L_2917195_SNP [dm3] 2L_2917195_SNP [dm6]	A	G	3.142e^-4	0.882	INTRON lilli	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14114574	2L_14114574_SNP [dm3] 2L_14114574_SNP [dm6]	T	A	3.146e^-4	0.882	INTERGENIC
3R	26259637	3R_26259637_SNP [dm3] 3R_30433915_SNP [dm6]	T	A	3.149e^-4	0.882	INTRON CG15534
3R	18151885	3R_18151885_SNP [dm3] 3R_22326163_SNP [dm6]	G	A	3.152e^-4	0.882	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	6429703	X_6429703_SNP [dm3] X_6535670_SNP [dm6]	G	A	3.154e^-4	0.882	SYNONYMOUS_CODING dx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18357596	3R_18357596_SNP [dm3] 3R_22531874_SNP [dm6]	C	T	3.173e^-4	0.882	NON_SYNONYMOUS_CODING CG33093 DOWNSTREAM CG5326
2L	14628078	2L_14628078_INS [dm3] 2L_14628078_INS [dm6]	G	GATCTGTG	3.176e^-4	0.882	INTRON osp	TF binding site mE1_TFBS_HSA
X	9629508	X_9629508_SNP [dm3] X_9735475_SNP [dm6]	C	A	3.180e^-4	0.882	INTRON Sp1
2R	19997567	2R_19997567_SNP [dm3] 2R_24110044_SNP [dm6]	C	T	3.184e^-4	0.882	NON_SYNONYMOUS_CODING CG4049
3L	10987074	3L_10987074_SNP [dm3] 3L_10993974_SNP [dm6]	G	A	3.191e^-4	0.882	INTRON klu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3562838	2L_3562838_SNP [dm3] 2L_3562838_SNP [dm6]	T	C	3.191e^-4	0.882	DOWNSTREAM CR44747 EXON CR44309
3L	10462464	3L_10462464_SNP [dm3] 3L_10469364_SNP [dm6]	G	A	3.192e^-4	0.882	DOWNSTREAM S-Lap3 INTERGENIC
3L	10223162	3L_10223162_SNP [dm3] 3L_10230062_SNP [dm6]	A	T	3.194e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	10684580	2L_10684580_SNP [dm3] 2L_10684580_SNP [dm6]	G	T	3.208e^-4	0.882	UPSTREAM CG7299 INTERGENIC
2L	17232433	2L_17232433_SNP [dm3] 2L_17232433_SNP [dm6]	T	A	3.210e^-4	0.882	INTRON beat-IIIc
3R	14460625	3R_14460625_SNP [dm3] 3R_18634903_SNP [dm6]	A	T	3.213e^-4	0.882	INTRON qin & 1 other
3L	520516	3L_520516_DEL [dm3] 3L_520516_DEL [dm6]	TGAGAAAGGTTT...	T	3.229e^-4	0.882	INTRON klar	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	18395478	3R_18395478_SNP [dm3] 3R_22569756_SNP [dm6]	A	G	3.236e^-4	0.882	UPSTREAM CG33110 INTERGENIC
3R	25508549	3R_25508549_SNP [dm3] 3R_29682827_SNP [dm6]	G	C	3.237e^-4	0.882	UPSTREAM CG7582 INTRON Gycalpha99B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	20984490	3R_20984490_SNP [dm3] 3R_25158768_SNP [dm6]	A	G	3.243e^-4	0.882	INTERGENIC
3R	21657843	3R_21657843_SNP [dm3] 3R_25832121_SNP [dm6]	A	T	3.248e^-4	0.882	UPSTREAM alpha4GT2 & 1 other INTERGENIC
3R	5688122	3R_5688122_SNP [dm3] 3R_9862400_SNP [dm6]	T	G	3.248e^-4	0.882	INTRON Teh1
2R	19367951	2R_19367951_SNP [dm3] 2R_23480428_SNP [dm6]	A	G	3.257e^-4	0.882	INTRON CG43795
3L	14674586	3L_14674586_SNP [dm3] 3L_14681486_SNP [dm6]	A	T	3.265e^-4	0.882	INTRON ome
3R	8986205	3R_8986205_SNP [dm3] 3R_13160483_SNP [dm6]	A	T	3.266e^-4	0.882	INTRON timeout
3R	21909767	3R_21909767_SNP [dm3] 3R_26084045_SNP [dm6]	A	G	3.272e^-4	0.882	INTRON dys
3L	5227261	3L_5227261_SNP [dm3] 3L_5234161_SNP [dm6]	T	C	3.278e^-4	0.882	UPSTREAM CG4669 INTRON shep
2L	11921463	2L_11921463_SNP [dm3] 2L_11921463_SNP [dm6]	C	T	3.280e^-4	0.882	INTRON Pde1c
3L	6875394	3L_6875394_SNP [dm3] 3L_6882294_SNP [dm6]	G	A	3.295e^-4	0.882	INTERGENIC
3R	16995890	3R_16995890_SNP [dm3] 3R_21170168_SNP [dm6]	C	G	3.295e^-4	0.882	INTRON SNF4Agamma
3R	26260573	3R_26260573_SNP [dm3] 3R_30434851_SNP [dm6]	T	A	3.295e^-4	0.882	DOWNSTREAM CG15537 INTRON CG15534
3R	14376277	3R_14376277_SNP [dm3] 3R_18550555_SNP [dm6]	A	G	3.300e^-4	0.882	INTERGENIC
3L	5227219	3L_5227219_SNP [dm3] 3L_5234119_SNP [dm6]	C	T	3.302e^-4	0.882	UPSTREAM CG4669 INTRON shep
2R	16934757	2R_16934757_SNP [dm3] 2R_21047252_SNP [dm6]	A	G	3.310e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5943888	2L_5943888_DEL [dm3] 2L_5943888_DEL [dm6]	CTC	C	3.311e^-4	0.882	UTR_5_PRIME Gpdh UPSTREAM Gpdh & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2L	13074679	2L_13074679_SNP [dm3] 2L_13074679_SNP [dm6]	A	G	3.312e^-4	0.882	INTERGENIC
3R	14448321	3R_14448321_SNP [dm3] 3R_18622599_SNP [dm6]	T	A	3.315e^-4	0.882	INTRON qin	TF binding site mE1_TFBS_inv
X	6431089	X_6431089_SNP [dm3] X_6537056_SNP [dm6]	C	T	3.315e^-4	0.882	INTRON dx	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	18349916	3L_18349916_SNP [dm3] 3L_18356816_SNP [dm6]	T	C	3.318e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	9336435	2R_9336435_SNP [dm3] 2R_13448930_SNP [dm6]	A	G	3.328e^-4	0.882	INTRON cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	18447747	3R_18447747_SNP [dm3] 3R_22622025_SNP [dm6]	C	T	3.333e^-4	0.882	SYNONYMOUS_CODING loco	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	17258360	X_17258360_SNP [dm3] X_17364327_SNP [dm6]	T	G	3.339e^-4	0.882	INTERGENIC
3R	13739432	3R_13739432_SNP [dm3] 3R_17913710_SNP [dm6]	G	C	3.339e^-4	0.882	INTRON Rim
3L	6157665	3L_6157665_SNP [dm3] 3L_6164565_SNP [dm6]	C	T	3.350e^-4	0.882	SYNONYMOUS_CODING CG13296 DOWNSTREAM CG10289	TF binding site mE1_TFBS_cad
3R	14805174	3R_14805174_SNP [dm3] 3R_18979452_SNP [dm6]	A	G	3.361e^-4	0.882	SYNONYMOUS_CODING Smu1 UPSTREAM CG12269	TF binding site mE1_TFBS_sens
3L	9523646	3L_9523646_SNP [dm3] 3L_9530546_SNP [dm6]	C	T	3.370e^-4	0.882	NON_SYNONYMOUS_CODING Or67a
2L	21188078	2L_21188078_SNP [dm3] 2L_21188078_SNP [dm6]	C	T	3.375e^-4	0.882	INTRON Ret
3R	21758500	3R_21758500_DEL [dm3] 3R_25932778_DEL [dm6]	ACTACTTTAGTGGAAACAGC...	A	3.383e^-4	0.882	DOWNSTREAM CR34024 INTRON CCAP-R
X	6010150	X_6010150_SNP [dm3] X_6116117_SNP [dm6]	A	G	3.385e^-4	0.882	INTRON Ca-alpha1T
3R	21547693	3R_21547693_SNP [dm3] 3R_25721971_SNP [dm6]	A	G	3.388e^-4	0.882	INTRON LpR2
2R	16937743	2R_16937743_SNP [dm3] 2R_21050238_SNP [dm6]	C	A	3.389e^-4	0.882	UTR_3_PRIME shg	TF binding site BDTNP1_TFBS_dl
3L	10975857	3L_10975857_SNP [dm3] 3L_10982757_SNP [dm6]	T	C	3.391e^-4	0.882	SYNONYMOUS_CODING klu	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	5095198	3L_5095198_SNP [dm3] 3L_5095198_SNP [dm6]	C	A	3.394e^-4	0.882	INTERGENIC
X	2040741	X_2040741_DEL [dm3] X_2146708_DEL [dm6]	ACAAAGGTTATTGATTATCA...	A	3.398e^-4	0.882	INTRON Pgd	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11258915	3R_11258915_SNP [dm3] 3R_15433193_SNP [dm6]	T	A	3.408e^-4	0.882	INTRON CG6118
3R	17997824	3R_17997824_SNP [dm3] 3R_22172102_SNP [dm6]	G	A	3.414e^-4	0.882	INTRON SKIP
3L	14137214	3L_14137214_SNP [dm3] 3L_14144114_SNP [dm6]	A	T	3.414e^-4	0.882	INTERGENIC	regulatory region REDfly_CRMs
2R	12516230	2R_12516230_SNP [dm3] 2R_16628725_SNP [dm6]	A	C	3.421e^-4	0.882	UTR_3_PRIME Alk
3R	6995450	3R_6995450_SNP [dm3] 3R_11169728_SNP [dm6]	C	T	3.424e^-4	0.882	SYNONYMOUS_CODING Ugt35b
3R	22786899	3R_22786899_SNP [dm3] 3R_26961177_SNP [dm6]	A	G	3.424e^-4	0.882	UTR_3_PRIME Tsp97E DOWNSTREAM Tsp97E
2L	13962265	2L_13962265_SNP [dm3] 2L_13962265_SNP [dm6]	T	C	3.425e^-4	0.882	SYNONYMOUS_CODING NimA UTR_3_PRIME NimA
3L	1997625	3L_1997625_DEL [dm3] 3L_1997625_DEL [dm6]	CCGCCA	C	3.429e^-4	0.882	INTERGENIC
X	17179019	X_17179019_SNP [dm3] X_17284986_SNP [dm6]	G	C	3.431e^-4	0.882	UPSTREAM CG8661 DOWNSTREAM Fim INTRON CG5445
3L	7606740	3L_7606740_INS [dm3] 3L_7613640_INS [dm6]	G	GC	3.432e^-4	0.882	INTRON CG33275
2L	12667862	2L_12667862_SNP [dm3] 2L_12667862_SNP [dm6]	A	C	3.433e^-4	0.882	SYNONYMOUS_CODING CG15485 INTRON pdm2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
X	19777005	X_19777005_SNP [dm3] X_19882972_SNP [dm6]	C	T	3.433e^-4	0.882	INTRON Hers	TF binding site BDTNP1_TFBS_da
2L	8322978	2L_8322978_SNP [dm3] 2L_8322978_SNP [dm6]	T	G	3.433e^-4	0.882	INTRON CG7781	TF binding site mE1_TFBS_cad
2L	8322982	2L_8322982_SNP [dm3] 2L_8322982_SNP [dm6]	C	T	3.433e^-4	0.882	INTRON CG7781	TF binding site mE1_TFBS_cad
3L	6157653	3L_6157653_SNP [dm3] 3L_6164553_SNP [dm6]	A	G	3.435e^-4	0.882	SYNONYMOUS_CODING CG13296 DOWNSTREAM CG10289	TF binding site mE1_TFBS_cad
3L	10462850	3L_10462850_SNP [dm3] 3L_10469750_SNP [dm6]	T	A	3.442e^-4	0.882	DOWNSTREAM S-Lap3 INTERGENIC
2L	9706561	2L_9706561_SNP [dm3] 2L_9706561_SNP [dm6]	G	T	3.445e^-4	0.882	UPSTREAM CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	9706562	2L_9706562_DEL [dm3] 2L_9706562_DEL [dm6]	TTGGATATGAT...	T	3.445e^-4	0.882	UPSTREAM CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	22011473	3L_22011473_SNP [dm3] 3L_22018373_SNP [dm6]	T	A	3.448e^-4	0.882	INTERGENIC
3L	11319783	3L_11319783_SNP [dm3] 3L_11326683_SNP [dm6]	A	G	3.449e^-4	0.882	INTERGENIC
3R	8927737	3R_8927737_SNP [dm3] 3R_13102015_SNP [dm6]	G	T	3.465e^-4	0.882	INTRON timeout
3L	6176921	3L_6176921_SNP [dm3] 3L_6183821_SNP [dm6]	C	T	3.473e^-4	0.882	SYNONYMOUS_CODING D19B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
3R	24034416	3R_24034416_SNP [dm3] 3R_28208694_SNP [dm6]	A	G	3.479e^-4	0.882	INTRON CG34354	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	21943586	3R_21943586_INS [dm3] 3R_26117864_INS [dm6]	T	TTAAAGT	3.479e^-4	0.882	INTRON CG31324
3L	5782629	3L_5782629_SNP [dm3] 3L_5789529_SNP [dm6]	T	C	3.485e^-4	0.882	DOWNSTREAM Bre1 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	14328462	2L_14328462_SNP [dm3] 2L_14328462_SNP [dm6]	G	C	3.487e^-4	0.882	UTR_5_PRIME ms_2_34Fe DOWNSTREAM wb
3R	13089213	3R_13089213_SNP [dm3] 3R_17263491_SNP [dm6]	T	C	3.488e^-4	0.882	INTRON beat-IIb
3R	10047686	3R_10047686_SNP [dm3] 3R_14221964_SNP [dm6]	C	G	3.496e^-4	0.882	UPSTREAM CG33109 DOWNSTREAM Sp212 INTERGENIC
2R	9344047	2R_9344047_SNP [dm3] 2R_13456542_SNP [dm6]	A	T	3.497e^-4	0.882	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_cad
3R	9443770	3R_9443770_SNP [dm3] 3R_13618048_SNP [dm6]	T	A	3.497e^-4	0.882	EXON CR45680
2R	13088130	2R_13088130_DEL [dm3] 2R_17200625_DEL [dm6]	CT	C	3.498e^-4	0.882	INTERGENIC
3L	4736710	3L_4736710_SNP [dm3] 3L_4736710_SNP [dm6]	T	A	3.504e^-4	0.882	INTRON RhoGEF64C
2L	8378056	2L_8378056_SNP [dm3] 2L_8378056_SNP [dm6]	A	T	3.505e^-4	0.882	UTR_3_PRIME CG17294 DOWNSTREAM Aats-ala
3R	25803397	3R_25803397_SNP [dm3] 3R_29977675_SNP [dm6]	T	C	3.509e^-4	0.882	INTERGENIC
3L	18616883	3L_18616883_SNP [dm3] 3L_18623783_SNP [dm6]	C	T	3.518e^-4	0.882	SYNONYMOUS_CODING bora	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	5952455	3R_5952455_SNP [dm3] 3R_10126733_SNP [dm6]	T	G	3.521e^-4	0.882	UTR_3_PRIME tws DOWNSTREAM tws
3L	7276933	3L_7276933_SNP [dm3] 3L_7283833_SNP [dm6]	T	A	3.526e^-4	0.882	INTRON unc-13-4A
2L	2940219	2L_2940219_SNP [dm3] 2L_2940219_SNP [dm6]	G	A	3.532e^-4	0.882	INTRON lilli
2R	17264018	2R_17264018_SNP [dm3] 2R_21376513_SNP [dm6]	T	G	3.542e^-4	0.882	INTRON cv-2
2L	5879424	2L_5879424_SNP [dm3] 2L_5879424_SNP [dm6]	T	C	3.545e^-4	0.882	START_GAINED rau UTR_5_PRIME rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	8005147	3L_8005147_DEL [dm3] 3L_8012047_DEL [dm6]	AAAATATCCTTACA...	A	3.548e^-4	0.882	INTRON nmo
3L	15852527	3L_15852527_SNP [dm3] 3L_15859427_SNP [dm6]	A	G	3.560e^-4	0.882	INTRON pHCl
2L	9621118	2L_9621118_SNP [dm3] 2L_9621118_SNP [dm6]	G	T	3.565e^-4	0.882	INTRON GlcAT-S
3L	5095210	3L_5095210_SNP [dm3] 3L_5095210_SNP [dm6]	G	A	3.570e^-4	0.882	INTERGENIC
3L	10223317	3L_10223317_SNP [dm3] 3L_10230217_SNP [dm6]	G	T	3.572e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	17282524	3R_17282524_SNP [dm3] 3R_21456802_SNP [dm6]	A	G	3.577e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	2805495	3R_2805495_SNP [dm3] 3R_6979773_SNP [dm6]	A	T	3.584e^-4	0.882	INTRON Antp	TF binding site BDTNP1_TFBS_dl
3L	6589159	3L_6589159_SNP [dm3] 3L_6596059_SNP [dm6]	C	G	3.587e^-4	0.882	SYNONYMOUS_CODING ndl
2L	8658062	2L_8658062_SNP [dm3] 2L_8658062_SNP [dm6]	C	T	3.593e^-4	0.882	INTRON Sema-1a
3R	5471313	3R_5471313_SNP [dm3] 3R_9645591_SNP [dm6]	C	G	3.595e^-4	0.882	SYNONYMOUS_CODING Fst INTRON Dh44	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16954828	X_16954828_SNP [dm3] X_17060795_SNP [dm6]	C	T	3.596e^-4	0.882	INTRON CG45002
3L	4932698	3L_4932698_SNP [dm3] 3L_4932698_SNP [dm6]	G	A	3.604e^-4	0.882	INTERGENIC	regulatory region REDfly_CRMs
3R	5811260	3R_5811260_SNP [dm3] 3R_9985538_SNP [dm6]	C	T	3.604e^-4	0.882	NON_SYNONYMOUS_CODING Art4 INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	7080319	2L_7080319_SNP [dm3] 2L_7080319_SNP [dm6]	T	A	3.607e^-4	0.882	UPSTREAM CR44611 INTRON Pvf2
3L	1545444	3L_1545444_SNP [dm3] 3L_1545444_SNP [dm6]	A	G	3.608e^-4	0.882	UPSTREAM Cct1 DOWNSTREAM CG7852 INTRON CG32313	TF binding site BDTNP1_TFBS_dl
2R	8499879	2R_8499879_SNP [dm3] 2R_12612374_SNP [dm6]	T	A	3.616e^-4	0.882	UPSTREAM Galphaq & 1 other DOWNSTREAM Amph INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
2R	19999759	2R_19999759_SNP [dm3] 2R_24112236_SNP [dm6]	G	A	3.617e^-4	0.882	SYNONYMOUS_CODING CG4049	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1346313	2L_1346313_SNP [dm3] 2L_1346313_SNP [dm6]	C	T	3.623e^-4	0.882	UPSTREAM CR45005 EXON CR45006
3R	10045709	3R_10045709_SNP [dm3] 3R_14219987_SNP [dm6]	C	G	3.639e^-4	0.882	NON_SYNONYMOUS_CODING CG31326 SPLICE_SITE_REGION CG31326 DOWNSTREAM CG33109
X	7308104	X_7308104_SNP [dm3] X_7414071_SNP [dm6]	T	A	3.640e^-4	0.882	SYNONYMOUS_CODING CG42705 DOWNSTREAM CG42704
2R	20000870	2R_20000870_SNP [dm3] 2R_24113347_SNP [dm6]	A	C	3.644e^-4	0.882	INTRON CG4049	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	22579450	3L_22579450_SNP [dm3] 3L_22586350_SNP [dm6]	G	T	3.648e^-4	0.882	INTRON CG14459	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	17032249	3R_17032249_SNP [dm3] 3R_21206527_SNP [dm6]	T	C	3.649e^-4	0.882	INTRON SNF4Agamma	TF binding site mE1_TFBS_Trl
3R	19078970	3R_19078970_SNP [dm3] 3R_23253248_SNP [dm6]	T	C	3.649e^-4	0.882	SYNONYMOUS_CODING EloA
2L	18886834	2L_18886834_SNP [dm3] 2L_18886834_SNP [dm6]	A	C	3.649e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8077363	3L_8077363_SNP [dm3] 3L_8084263_SNP [dm6]	C	G	3.650e^-4	0.882	INTRON Ect4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	17906943	3R_17906943_SNP [dm3] 3R_22081221_SNP [dm6]	A	C	3.650e^-4	0.882	INTRON CG13408	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	14773290	3L_14773290_SNP [dm3] 3L_14780190_SNP [dm6]	T	A	3.650e^-4	0.882	INTRON bmm	TF binding site BDTNP1_TFBS_z
2R	17927467	2R_17927467_SNP [dm3] 2R_22039962_SNP [dm6]	T	G	3.653e^-4	0.882	UPSTREAM CG34370 INTERGENIC
2L	5941891	2L_5941891_DEL [dm3] 2L_5941891_DEL [dm6]	ATGTT	A	3.657e^-4	0.882	UPSTREAM CR45289 DOWNSTREAM Sfp26Ad INTERGENIC
3R	17688039	3R_17688039_SNP [dm3] 3R_21862317_SNP [dm6]	T	A	3.659e^-4	0.882	UPSTREAM CR45645 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	22607675	3L_22607675_SNP [dm3] 3L_22614575_SNP [dm6]	G	A	3.663e^-4	0.882	INTRON CG14459
2L	11926136	2L_11926136_SNP [dm3] 2L_11926136_SNP [dm6]	C	A	3.665e^-4	0.882	INTRON Pde1c
2R	16385719	2R_16385719_SNP [dm3] 2R_20498214_SNP [dm6]	T	G	3.669e^-4	0.882	INTERGENIC
3R	22786669	3R_22786669_SNP [dm3] 3R_26960947_SNP [dm6]	T	C	3.675e^-4	0.882	DOWNSTREAM Tsp97E INTERGENIC
2L	18178017	2L_18178017_SNP [dm3] 2L_18178017_SNP [dm6]	A	G	3.678e^-4	0.882	INTRON CG42750
3R	24720433	3R_24720433_SNP [dm3] 3R_28894711_SNP [dm6]	C	T	3.679e^-4	0.882	NON_SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_chinmo
2R	19998366	2R_19998366_SNP [dm3] 2R_24110843_SNP [dm6]	A	G	3.681e^-4	0.882	SYNONYMOUS_CODING CG4049	TF binding site mE1_TFBS_cad
2L	5899826	2L_5899826_SNP [dm3] 2L_5899826_SNP [dm6]	G	A	3.683e^-4	0.882	DOWNSTREAM CR44579 INTERGENIC
2R	20003400	2R_20003400_SNP [dm3] 2R_24115877_SNP [dm6]	T	C	3.693e^-4	0.884	UPSTREAM CG3257 INTRON CG3253	TF binding site mE1_TFBS_sens
2L	17224872	2L_17224872_SNP [dm3] 2L_17224872_SNP [dm6]	G	A	3.712e^-4	0.886	INTRON beat-IIIc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12962690	3R_12962690_SNP [dm3] 3R_17136968_SNP [dm6]	C	T	3.713e^-4	0.886	NON_SYNONYMOUS_CODING CG5246 UPSTREAM CG5255
3L	15768714	3L_15768714_SNP [dm3] 3L_15775614_SNP [dm6]	G	A	3.717e^-4	0.886	INTERGENIC
2R	16275506	2R_16275506_SNP [dm3] 2R_20388001_SNP [dm6]	T	C	3.722e^-4	0.886	INTERGENIC
2R	19288609	2R_19288609_SNP [dm3] 2R_23401086_SNP [dm6]	G	C	3.727e^-4	0.886	INTRON CG3520	TF binding site mE1_TFBS_chinmo
3L	5433307	3L_5433307_INS [dm3] 3L_5440207_INS [dm6]	T	TAATCT	3.739e^-4	0.887	UTR_3_PRIME CG34391 DOWNSTREAM CG34391
2R	7109261	2R_7109261_SNP [dm3] 2R_11221756_SNP [dm6]	T	C	3.755e^-4	0.887	INTRON Syx6
2L	8169126	2L_8169126_SNP [dm3] 2L_8169126_SNP [dm6]	A	G	3.757e^-4	0.887	INTRON Piezo
3R	23205984	3R_23205984_SNP [dm3] 3R_27380262_SNP [dm6]	T	C	3.757e^-4	0.887	UTR_3_PRIME side INTRON side
2L	11307434	2L_11307434_SNP [dm3] 2L_11307434_SNP [dm6]	G	A	3.759e^-4	0.887	UPSTREAM CR43721 INTERGENIC
3R	3563227	3R_3563227_SNP [dm3] 3R_7737505_SNP [dm6]	G	A	3.760e^-4	0.887	INTERGENIC
2L	7569039	2L_7569039_SNP [dm3] 2L_7569039_SNP [dm6]	G	A	3.764e^-4	0.887	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16463741	2L_16463741_SNP [dm3] 2L_16463741_SNP [dm6]	A	T	3.773e^-4	0.887	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6602435	2L_6602435_SNP [dm3] 2L_6602435_SNP [dm6]	T	A	3.775e^-4	0.887	INTERGENIC
3R	7001701	3R_7001701_SNP [dm3] 3R_11175979_SNP [dm6]	C	A	3.791e^-4	0.89	UPSTREAM Ugt86Dj INTRON Ugt86Dh
3R	21420585	3R_21420585_SNP [dm3] 3R_25594863_SNP [dm6]	C	A	3.800e^-4	0.891	UTR_5_PRIME msi INTRON msi & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3R	6438452	3R_6438452_SNP [dm3] 3R_10612730_SNP [dm6]	A	G	3.804e^-4	0.891	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3R	14256854	3R_14256854_SNP [dm3] 3R_18431132_SNP [dm6]	T	C	3.812e^-4	0.891	DOWNSTREAM fru INTRON fru
2L	18884229	2L_18884229_SNP [dm3] 2L_18884229_SNP [dm6]	G	A	3.818e^-4	0.892	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	14079700	3L_14079700_SNP [dm3] 3L_14086600_SNP [dm6]	G	T	3.845e^-4	0.896	DOWNSTREAM CG8100 INTERGENIC
2L	1721256	2L_1721256_SNP [dm3] 2L_1721256_SNP [dm6]	A	G	3.846e^-4	0.896	INTRON Rim2
3L	9982765	3L_9982765_SNP [dm3] 3L_9989665_SNP [dm6]	T	G	3.864e^-4	0.896	INTRON dpr6
2L	4262309	2L_4262309_DEL [dm3] 2L_4262309_DEL [dm6]	CC	A	3.867e^-4	0.896	INTERGENIC
2L	6379388	2L_6379388_SNP [dm3] 2L_6379388_SNP [dm6]	T	G	3.869e^-4	0.896	INTRON CG42368
2L	6379389	2L_6379389_SNP [dm3] 2L_6379389_SNP [dm6]	G	A	3.869e^-4	0.896	INTRON CG42368
3R	20980728	3R_20980728_SNP [dm3] 3R_25155006_SNP [dm6]	C	T	3.871e^-4	0.896	INTERGENIC
2L	13740426	2L_13740426_SNP [dm3] 2L_13740426_SNP [dm6]	A	G	3.873e^-4	0.896	INTERGENIC
2L	1720627	2L_1720627_SNP [dm3] 2L_1720627_SNP [dm6]	T	C	3.880e^-4	0.896	INTRON Rim2
2L	6362886	2L_6362886_SNP [dm3] 2L_6362886_SNP [dm6]	A	C	3.886e^-4	0.896	INTERGENIC
2L	9186931	2L_9186931_SNP [dm3] 2L_9186931_SNP [dm6]	T	G	3.898e^-4	0.898	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16079085	3L_16079085_SNP [dm3] 3L_16085985_SNP [dm6]	A	T	3.905e^-4	0.898	UTR_3_PRIME Taspase1 DOWNSTREAM CG13075
2L	14628386	2L_14628386_SNP [dm3] 2L_14628386_SNP [dm6]	C	A	3.913e^-4	0.898	INTRON osp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7560637	2L_7560637_SNP [dm3] 2L_7560637_SNP [dm6]	G	A	3.921e^-4	0.898	INTRON RapGAP1
2L	13874427	2L_13874427_SNP [dm3] 2L_13874427_SNP [dm6]	A	G	3.925e^-4	0.898	INTRON CenG1A
X	18405347	X_18405347_SNP [dm3] X_18511314_SNP [dm6]	A	G	3.930e^-4	0.898	INTRON Ggt-1
2R	16180621	2R_16180621_SNP [dm3] 2R_20293116_SNP [dm6]	A	T	3.930e^-4	0.898	UPSTREAM CR44639 DOWNSTREAM CR44638 INTERGENIC
X	2069817	X_2069817_SNP [dm3] X_2175784_SNP [dm6]	A	T	3.936e^-4	0.898	UPSTREAM Cyp4d2 & 1 other DOWNSTREAM CR44690 EXON CR45479
2L	6550446	2L_6550446_SNP [dm3] 2L_6550446_SNP [dm6]	A	T	3.954e^-4	0.898	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	2598535	2L_2598535_SNP [dm3] 2L_2598535_SNP [dm6]	T	A	3.957e^-4	0.898	DOWNSTREAM CR44790 INTERGENIC
3L	2002416	3L_2002416_SNP [dm3] 3L_2002416_SNP [dm6]	G	T	3.961e^-4	0.898	DOWNSTREAM CG42841 INTERGENIC
3R	26260569	3R_26260569_SNP [dm3] 3R_30434847_SNP [dm6]	G	C	3.977e^-4	0.898	DOWNSTREAM CG15537 INTRON CG15534
2L	11676457	2L_11676457_SNP [dm3] 2L_11676457_SNP [dm6]	C	A	3.989e^-4	0.898	INTERGENIC
3L	1999980	3L_1999980_SNP [dm3] 3L_1999980_SNP [dm6]	A	C	3.990e^-4	0.898	INTERGENIC
2R	7473421	2R_7473421_SNP [dm3] 2R_11585916_SNP [dm6]	G	T	3.997e^-4	0.898	SYNONYMOUS_CODING tou
X	197935	X_197935_DEL [dm3] X_303902_DEL [dm6]	GGATG	G	4.002e^-4	0.898	INTRON CG3777
2R	11662923	2R_11662923_SNP [dm3] 2R_15775418_SNP [dm6]	G	A	4.012e^-4	0.898	SYNONYMOUS_CODING Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12783740	2R_12783740_SNP [dm3] 2R_16896235_SNP [dm6]	C	T	4.014e^-4	0.898	UPSTREAM mir-990 & 1 other INTERGENIC
2L	17926115	2L_17926115_SNP [dm3] 2L_17926115_SNP [dm6]	C	G	4.015e^-4	0.898	INTERGENIC
3R	7326466	3R_7326466_SNP [dm3] 3R_11500744_SNP [dm6]	T	C	4.016e^-4	0.898	UPSTREAM dpr5 INTRON dpr5	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Kr
X	14219746	X_14219746_SNP [dm3] X_14325713_SNP [dm6]	G	A	4.020e^-4	0.898	INTRON dpr8
2R	9330890	2R_9330890_DEL [dm3] 2R_13443385_DEL [dm6]	ATCAA	A	4.020e^-4	0.898	UTR_3_PRIME cnn INTRON cnn
2R	9330896	2R_9330896_SNP [dm3] 2R_13443391_SNP [dm6]	T	G	4.020e^-4	0.898	UTR_3_PRIME cnn INTRON cnn
3R	5867343	3R_5867343_SNP [dm3] 3R_10041621_SNP [dm6]	T	C	4.020e^-4	0.898	INTRON Mical
X	11234363	X_11234363_SNP [dm3] X_11340330_SNP [dm6]	T	A	4.020e^-4	0.898	UTR_5_PRIME CG34348 UPSTREAM Kap3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	1346235	2L_1346235_SNP [dm3] 2L_1346235_SNP [dm6]	G	A	4.021e^-4	0.898	UPSTREAM CR45005 EXON CR45006
2L	5899834	2L_5899834_SNP [dm3] 2L_5899834_SNP [dm6]	G	A	4.021e^-4	0.898	DOWNSTREAM CR44579 INTERGENIC
2L	18911818	2L_18911818_SNP [dm3] 2L_18911818_SNP [dm6]	C	T	4.049e^-4	0.898	INTERGENIC
3R	8171909	3R_8171909_DEL [dm3] 3R_12346187_DEL [dm6]	TT	T	4.057e^-4	0.898	INTERGENIC
2L	9594278	2L_9594278_SNP [dm3] 2L_9594278_SNP [dm6]	T	C	4.058e^-4	0.898	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14106414	2L_14106414_SNP [dm3] 2L_14106414_SNP [dm6]	T	A	4.059e^-4	0.898	SYNONYMOUS_CODING CG16879
2L	13962334	2L_13962334_SNP [dm3] 2L_13962334_SNP [dm6]	A	C	4.081e^-4	0.898	SYNONYMOUS_CODING NimA UTR_3_PRIME NimA
3R	16379995	3R_16379995_SNP [dm3] 3R_20554273_SNP [dm6]	A	C	4.081e^-4	0.898	NON_SYNONYMOUS_CODING att-ORFB START_GAINED att-ORFA UTR_5_PRIME att-ORFA INTRON att-ORFA	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	1140163	2L_1140163_SNP [dm3] 2L_1140163_SNP [dm6]	A	C	4.083e^-4	0.898	UTR_3_PRIME CG4577
2L	1140168	2L_1140168_SNP [dm3] 2L_1140168_SNP [dm6]	A	C	4.083e^-4	0.898	UTR_3_PRIME CG4577
3R	5879727	3R_5879727_SNP [dm3] 3R_10054005_SNP [dm6]	C	A	4.086e^-4	0.898	SPLICE_SITE_REGION CR44192 SYNONYMOUS_CODING Npc2e EXON CR44192	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21710535	3R_21710535_SNP [dm3] 3R_25884813_SNP [dm6]	A	C	4.090e^-4	0.898	INTRON SppL	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1502145	3L_1502145_SNP [dm3] 3L_1502145_SNP [dm6]	G	A	4.094e^-4	0.898	UPSTREAM Psa INTRON pUf68	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	3022762	X_3022762_SNP [dm3] X_3128729_SNP [dm6]	G	A	4.096e^-4	0.898	UTR_5_PRIME kirre INTRON kirre
2R	15144925	2R_15144925_SNP [dm3] 2R_19257420_SNP [dm6]	T	C	4.096e^-4	0.898	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
X	2821284	X_2821284_SNP [dm3] X_2927251_SNP [dm6]	G	A	4.098e^-4	0.898	UTR_5_PRIME CG14424 INTRON kirre
3R	9041070	3R_9041070_SNP [dm3] 3R_13215348_SNP [dm6]	A	C	4.099e^-4	0.898	UPSTREAM CG8483 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10974996	2L_10974996_SNP [dm3] 2L_10974996_SNP [dm6]	A	G	4.108e^-4	0.898	SYNONYMOUS_CODING abo DOWNSTREAM l_2_06225	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	8934686	3R_8934686_SNP [dm3] 3R_13108964_SNP [dm6]	C	T	4.113e^-4	0.898	INTRON timeout
2L	17933889	2L_17933889_SNP [dm3] 2L_17933889_SNP [dm6]	C	A	4.114e^-4	0.898	INTERGENIC
2L	18884223	2L_18884223_SNP [dm3] 2L_18884223_SNP [dm6]	T	G	4.124e^-4	0.898	INTERGENIC	TF binding site mE1_TFBS_HSA
X	16921612	X_16921612_SNP [dm3] X_17027579_SNP [dm6]	T	A	4.125e^-4	0.898	INTRON CG45002
2L	7723015	2L_7723015_SNP [dm3] 2L_7723015_SNP [dm6]	G	T	4.132e^-4	0.898	UPSTREAM CG13794 DOWNSTREAM CG13795 INTERGENIC
X	16232785	X_16232785_DEL [dm3] X_16338752_DEL [dm6]	AA	A	4.135e^-4	0.898	UTR_3_PRIME Dsp1	TF binding site mE1_TFBS_inv
2L	18968837	2L_18968837_SNP [dm3] 2L_18968837_SNP [dm6]	C	T	4.139e^-4	0.898	UPSTREAM Tango6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	18400976	X_18400976_SNP [dm3] X_18506943_SNP [dm6]	T	C	4.152e^-4	0.898	INTRON Ggt-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk
X	18401047	X_18401047_SNP [dm3] X_18507014_SNP [dm6]	T	G	4.152e^-4	0.898	INTRON Ggt-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk
3R	24660139	3R_24660139_SNP [dm3] 3R_28834417_SNP [dm6]	T	C	4.152e^-4	0.898	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo
3R	23388885	3R_23388885_DEL [dm3] 3R_27563163_DEL [dm6]	TTT	T	4.167e^-4	0.898	UTR_3_PRIME wdb
X	8282386	X_8282386_SNP [dm3] X_8388353_SNP [dm6]	A	G	4.170e^-4	0.898	SYNONYMOUS_CODING CG1387	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16906531	3L_16906531_SNP [dm3] 3L_16913431_SNP [dm6]	T	G	4.173e^-4	0.898	INTRON Lmpt
3L	6152664	3L_6152664_SNP [dm3] 3L_6159564_SNP [dm6]	T	A	4.174e^-4	0.898	UPSTREAM Cpr65Ay INTERGENIC
3L	8594706	3L_8594706_SNP [dm3] 3L_8601606_SNP [dm6]	G	T	4.180e^-4	0.898	UPSTREAM Nelf-E & 1 other DOWNSTREAM CG5989 & 1 other INTRON RpL14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	18719226	X_18719226_SNP [dm3] X_18825193_SNP [dm6]	C	A	4.180e^-4	0.898	INTRON CG42450	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17955532	2R_17955532_SNP [dm3] 2R_22068027_SNP [dm6]	C	T	4.196e^-4	0.898	SYNONYMOUS_CODING CG44249 UPSTREAM Snp INTRON Snp	TF binding site mE1_TFBS_sens
2L	3288569	2L_3288569_SNP [dm3] 2L_3288569_SNP [dm6]	C	G	4.196e^-4	0.898	EXON CR44485
2L	1792901	2L_1792901_SNP [dm3] 2L_1792901_SNP [dm6]	A	G	4.203e^-4	0.898	NON_SYNONYMOUS_CODING Gr22b DOWNSTREAM Gr22a	regulatory region REDfly_CRMs
3R	8471644	3R_8471644_SNP [dm3] 3R_12645922_SNP [dm6]	A	G	4.208e^-4	0.898	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	3703652	2L_3703652_SNP [dm3] 2L_3703652_SNP [dm6]	C	T	4.213e^-4	0.898	UPSTREAM CG2816 DOWNSTREAM CR44311 & 1 other INTERGENIC
X	10284911	X_10284911_SNP [dm3] X_10390878_SNP [dm6]	C	T	4.214e^-4	0.898	INTRON flw
3R	14975334	3R_14975334_SNP [dm3] 3R_19149612_SNP [dm6]	G	A	4.217e^-4	0.898	SYNONYMOUS_CODING CG5835 DOWNSTREAM CR44107
2R	6322332	2R_6322332_SNP [dm3] 2R_10434827_SNP [dm6]	G	A	4.218e^-4	0.898	INTRON RanBPM
X	5921382	X_5921382_SNP [dm3] X_6027349_SNP [dm6]	C	G	4.224e^-4	0.898	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	20585964	3R_20585964_DEL [dm3] 3R_24760242_DEL [dm6]	AA	A	4.225e^-4	0.898	UTR_3_PRIME asp DOWNSTREAM AstA	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	10839592	3R_10839592_SNP [dm3] 3R_15013870_SNP [dm6]	A	G	4.236e^-4	0.898	UPSTREAM CG14861 INTERGENIC
3R	7065707	3R_7065707_SNP [dm3] 3R_11239985_SNP [dm6]	C	T	4.241e^-4	0.898	NON_SYNONYMOUS_CODING CG31388 UTR_3_PRIME CG31388 DOWNSTREAM scpr-B	TF binding site BDTNP1_TFBS_twi
2L	7080392	2L_7080392_SNP [dm3] 2L_7080392_SNP [dm6]	C	T	4.243e^-4	0.898	UPSTREAM CR44611 INTRON Pvf2
2L	7080397	2L_7080397_SNP [dm3] 2L_7080397_SNP [dm6]	T	C	4.243e^-4	0.898	UPSTREAM CR44611 INTRON Pvf2
2R	17726936	2R_17726936_SNP [dm3] 2R_21839431_SNP [dm6]	G	T	4.249e^-4	0.899	UPSTREAM CG4372 INTERGENIC
2R	9336769	2R_9336769_DEL [dm3] 2R_13449264_DEL [dm6]	ATG	A	4.257e^-4	0.899	UTR_5_PRIME cnn INTRON cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	10289524	2R_10289524_SNP [dm3] 2R_14402019_SNP [dm6]	A	G	4.269e^-4	0.9	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6190599	2R_6190599_SNP [dm3] 2R_10303094_SNP [dm6]	G	A	4.270e^-4	0.9	UPSTREAM CAP INTRON CAP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16758725	2R_16758725_SNP [dm3] 2R_20871220_SNP [dm6]	A	T	4.286e^-4	0.9	DOWNSTREAM IM14 INTRON Ipk1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	18299079	2L_18299079_SNP [dm3] 2L_18299079_SNP [dm6]	G	T	4.314e^-4	0.9	INTERGENIC
3L	1015967	3L_1015967_SNP [dm3] 3L_1015967_SNP [dm6]	A	T	4.325e^-4	0.9	INTRON trio
3L	21666769	3L_21666769_SNP [dm3] 3L_21673669_SNP [dm6]	C	T	4.329e^-4	0.9	SYNONYMOUS_CODING CG11249 DOWNSTREAM CG7158	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	22579473	3L_22579473_SNP [dm3] 3L_22586373_SNP [dm6]	G	T	4.331e^-4	0.9	INTRON CG14459	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14924251	2R_14924251_SNP [dm3] 2R_19036746_SNP [dm6]	C	A	4.338e^-4	0.9	UPSTREAM CG15115 INTERGENIC
2R	18240209	2R_18240209_SNP [dm3] 2R_22352704_SNP [dm6]	G	A	4.345e^-4	0.9	INTRON Liprin-gamma
2L	14114584	2L_14114584_SNP [dm3] 2L_14114584_SNP [dm6]	C	G	4.347e^-4	0.9	INTERGENIC
3R	21420590	3R_21420590_SNP [dm3] 3R_25594868_SNP [dm6]	A	C	4.352e^-4	0.9	UTR_5_PRIME msi INTRON msi & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3R	8952579	3R_8952579_SNP [dm3] 3R_13126857_SNP [dm6]	A	G	4.360e^-4	0.9	SYNONYMOUS_CODING 2mit INTRON timeout	TF binding site mE1_TFBS_chinmo
2R	12995224	2R_12995224_SNP [dm3] 2R_17107719_SNP [dm6]	G	A	4.363e^-4	0.9	DOWNSTREAM CG30456 INTERGENIC
3L	10212039	3L_10212039_SNP [dm3] 3L_10218939_SNP [dm6]	G	A	4.377e^-4	0.9	SYNONYMOUS_CODING CG32055	TF binding site mE1_TFBS_sens
3L	10212059	3L_10212059_SNP [dm3] 3L_10218959_SNP [dm6]	G	A	4.377e^-4	0.9	NON_SYNONYMOUS_CODING CG32055	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7326632	2L_7326632_SNP [dm3] 2L_7326632_SNP [dm6]	G	A	4.383e^-4	0.9	INTERGENIC
3L	2045067	3L_2045067_SNP [dm3] 3L_2045067_SNP [dm6]	T	C	4.392e^-4	0.9	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad
3R	8961573	3R_8961573_SNP [dm3] 3R_13135851_SNP [dm6]	C	T	4.393e^-4	0.9	INTRON timeout & 2 others
3L	14966906	3L_14966906_DEL [dm3] 3L_14973806_DEL [dm6]	TA	T	4.405e^-4	0.9	DOWNSTREAM Brd INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5950708	2L_5950708_SNP [dm3] 2L_5950708_SNP [dm6]	C	T	4.406e^-4	0.9	SYNONYMOUS_CODING CG9044	TF binding site mE1_TFBS_sens
3R	26094233	3R_26094233_SNP [dm3] 3R_30268511_SNP [dm6]	C	G	4.409e^-4	0.9	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	17996679	3R_17996679_SNP [dm3] 3R_22170957_SNP [dm6]	T	C	4.409e^-4	0.9	INTRON SKIP	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	22784418	3R_22784418_SNP [dm3] 3R_26958696_SNP [dm6]	T	C	4.413e^-4	0.9	UPSTREAM CG6330 INTERGENIC
3R	21901206	3R_21901206_SNP [dm3] 3R_26075484_SNP [dm6]	G	A	4.414e^-4	0.9	INTERGENIC
3R	2805458	3R_2805458_SNP [dm3] 3R_6979736_SNP [dm6]	C	T	4.416e^-4	0.9	INTRON Antp	TF binding site BDTNP1_TFBS_dl
X	7895908	X_7895908_SNP [dm3] X_8001875_SNP [dm6]	G	C	4.424e^-4	0.9	INTRON Tbh
3R	10301395	3R_10301395_SNP [dm3] 3R_14475673_SNP [dm6]	C	T	4.426e^-4	0.9	INTRON cv-c	TF binding site mE1_TFBS_sbb
3L	11893622	3L_11893622_SNP [dm3] 3L_11900522_SNP [dm6]	A	T	4.429e^-4	0.9	DOWNSTREAM CR43624 INTRON CG44837
3R	17775756	3R_17775756_SNP [dm3] 3R_21950034_SNP [dm6]	T	C	4.436e^-4	0.9	INTRON Eip93F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_zfh1
3R	5842915	3R_5842915_SNP [dm3] 3R_10017193_SNP [dm6]	T	A	4.451e^-4	0.9	INTRON Mical
3R	10038517	3R_10038517_SNP [dm3] 3R_14212795_SNP [dm6]	G	T	4.465e^-4	0.9	INTRON Dop1R1
X	7307921	X_7307921_SNP [dm3] X_7413888_SNP [dm6]	G	C	4.466e^-4	0.9	UTR_5_PRIME CG42705 DOWNSTREAM CG42704
3L	10987073	3L_10987073_SNP [dm3] 3L_10993973_SNP [dm6]	A	C	4.468e^-4	0.9	INTRON klu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19000455	3R_19000455_SNP [dm3] 3R_23174733_SNP [dm6]	T	A	4.469e^-4	0.9	UTR_5_PRIME Irk1 INTRON Irk1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2050494	3L_2050494_SNP [dm3] 3L_2050494_SNP [dm6]	T	C	4.469e^-4	0.9	NON_SYNONYMOUS_CODING sls
3R	10297800	3R_10297800_SNP [dm3] 3R_14472078_SNP [dm6]	A	C	4.472e^-4	0.9	INTRON cv-c
2L	7238763	2L_7238763_SNP [dm3] 2L_7238763_SNP [dm6]	C	T	4.483e^-4	0.9	INTRON Ndae1
2L	7085188	2L_7085188_SNP [dm3] 2L_7085188_SNP [dm6]	A	G	4.487e^-4	0.9	UPSTREAM Pvf2 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	17714859	3L_17714859_SNP [dm3] 3L_17721759_SNP [dm6]	A	G	4.491e^-4	0.9	INTRON Ccn
X	8327587	X_8327587_SNP [dm3] X_8433554_SNP [dm6]	G	T	4.494e^-4	0.9	SYNONYMOUS_CODING CG32712 DOWNSTREAM CG12125 & 1 other	TF binding site mE1_TFBS_HSA
3L	5433082	3L_5433082_SNP [dm3] 3L_5439982_SNP [dm6]	A	G	4.498e^-4	0.9	UTR_3_PRIME CG34391 DOWNSTREAM CG34391
X	7111995	X_7111995_SNP [dm3] X_7217962_SNP [dm6]	A	G	4.498e^-4	0.9	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da
3R	19507829	3R_19507829_SNP [dm3] 3R_23682107_SNP [dm6]	G	A	4.499e^-4	0.9	SYNONYMOUS_CODING eIF-3p66 UPSTREAM CG16710	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6432887	3R_6432887_SNP [dm3] 3R_10607165_SNP [dm6]	C	A	4.504e^-4	0.9	INTRON hth
X	20322398	X_20322398_SNP [dm3] X_20451371_SNP [dm6]	T	A	4.508e^-4	0.9	INTRON CG32506
3R	7729918	3R_7729918_SNP [dm3] 3R_11904196_SNP [dm6]	T	C	4.509e^-4	0.9	INTRON Cad87A
3R	18439572	3R_18439572_SNP [dm3] 3R_22613850_SNP [dm6]	T	C	4.522e^-4	0.9	SYNONYMOUS_CODING EF-G2 UPSTREAM CG31156	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	2668994	3L_2668994_SNP [dm3] 3L_2668994_SNP [dm6]	G	A	4.528e^-4	0.9	INTRON Fife
2R	7109262	2R_7109262_SNP [dm3] 2R_11221757_SNP [dm6]	C	T	4.528e^-4	0.9	INTRON Syx6
2L	13746657	2L_13746657_SNP [dm3] 2L_13746657_SNP [dm6]	A	G	4.530e^-4	0.9	UPSTREAM TM9SF4 & 1 other DOWNSTREAM mir-1002 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	14054509	3R_14054509_SNP [dm3] 3R_18228787_SNP [dm6]	G	A	4.531e^-4	0.9	DOWNSTREAM Mdh2 INTERGENIC
X	20569133	X_20569133_SNP [dm3] X_20698106_SNP [dm6]	T	C	4.534e^-4	0.9	DOWNSTREAM run INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17714876	3L_17714876_SNP [dm3] 3L_17721776_SNP [dm6]	C	T	4.539e^-4	0.9	INTRON Ccn
3L	1004288	3L_1004288_SNP [dm3] 3L_1004288_SNP [dm6]	C	T	4.542e^-4	0.9	INTRON trio
3R	26305721	3R_26305721_SNP [dm3] 3R_30479999_SNP [dm6]	A	T	4.542e^-4	0.9	INTRON PH4alphaEFB
X	10285081	X_10285081_SNP [dm3] X_10391048_SNP [dm6]	C	T	4.544e^-4	0.9	INTRON flw
2L	12644221	2L_12644221_SNP [dm3] 2L_12644221_SNP [dm6]	T	C	4.547e^-4	0.9	INTRON Ref2
3L	14966879	3L_14966879_SNP [dm3] 3L_14973779_SNP [dm6]	A	G	4.554e^-4	0.9	DOWNSTREAM Brd INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12984082	3L_12984082_SNP [dm3] 3L_12990982_SNP [dm6]	C	G	4.569e^-4	0.9	INTERGENIC
3R	25317466	3R_25317466_SNP [dm3] 3R_29491744_SNP [dm6]	G	A	4.570e^-4	0.9	UTR_3_PRIME CG2310 UPSTREAM Spase12 DOWNSTREAM CG2006	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo
2L	5128209	2L_5128209_SNP [dm3] 2L_5128209_SNP [dm6]	G	A	4.572e^-4	0.9	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	7080465	2L_7080465_SNP [dm3] 2L_7080465_SNP [dm6]	G	A	4.577e^-4	0.9	INTRON Pvf2
2L	14492546	2L_14492546_SNP [dm3] 2L_14492546_SNP [dm6]	G	A	4.584e^-4	0.9	SYNONYMOUS_CODING noc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8930555	3R_8930555_SNP [dm3] 3R_13104833_SNP [dm6]	G	A	4.590e^-4	0.9	INTRON timeout
3L	22532407	3L_22532407_SNP [dm3] 3L_22539307_SNP [dm6]	A	T	4.594e^-4	0.9	INTERGENIC
3R	17688103	3R_17688103_SNP [dm3] 3R_21862381_SNP [dm6]	C	G	4.604e^-4	0.9	UPSTREAM CR45645 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7517687	2L_7517687_INS [dm3] 2L_7517687_INS [dm6]	A	ATTTACCA	4.606e^-4	0.9	INTRON RapGAP1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	5530207	X_5530207_SNP [dm3] X_5636174_SNP [dm6]	T	C	4.608e^-4	0.9	INTRON CG42492	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	10048893	3R_10048893_SNP [dm3] 3R_14223171_SNP [dm6]	T	C	4.611e^-4	0.9	SYNONYMOUS_CODING Sp212
3L	16348517	3L_16348517_SNP [dm3] 3L_16355417_SNP [dm6]	T	A	4.613e^-4	0.9	INTRON CG45057
3L	2884692	3L_2884692_INS [dm3] 3L_2884692_INS [dm6]	T	TGT	4.615e^-4	0.9	INTRON spz5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	6348172	2L_6348172_SNP [dm3] 2L_6348172_SNP [dm6]	G	T	4.621e^-4	0.9	UTR_5_PRIME CG9497 UPSTREAM CG9497
2R	15536832	2R_15536832_SNP [dm3] 2R_19649327_SNP [dm6]	G	A	4.623e^-4	0.9	INTERGENIC
2R	18436193	2R_18436193_SNP [dm3] 2R_22548688_SNP [dm6]	A	G	4.624e^-4	0.9	INTRON px
3R	20585933	3R_20585933_SNP [dm3] 3R_24760211_SNP [dm6]	G	A	4.626e^-4	0.9	SYNONYMOUS_CODING asp DOWNSTREAM AstA	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	16934300	3L_16934300_SNP [dm3] 3L_16941200_SNP [dm6]	C	A	4.627e^-4	0.9	INTRON Cpr73D
3R	1591011	3R_1591011_SNP [dm3] 3R_5765289_SNP [dm6]	A	T	4.636e^-4	0.9	INTRON CG2082
3L	2000670	3L_2000670_SNP [dm3] 3L_2000670_SNP [dm6]	T	C	4.643e^-4	0.9	INTERGENIC
2L	3089748	2L_3089748_SNP [dm3] 2L_3089748_SNP [dm6]	G	C	4.644e^-4	0.9	INTRON toc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21656748	3R_21656748_SNP [dm3] 3R_25831026_SNP [dm6]	G	A	4.650e^-4	0.9	UPSTREAM Sfp96F & 1 other DOWNSTREAM Mst57Da INTERGENIC	regulatory region REDfly_CRMs
3L	3806465	3L_3806465_SNP [dm3] 3L_3806465_SNP [dm6]	T	A	4.660e^-4	0.9	UPSTREAM IntS10 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	11306992	2L_11306992_SNP [dm3] 2L_11306992_SNP [dm6]	G	A	4.668e^-4	0.9	UPSTREAM CR43721 INTERGENIC	TF binding site mE1_TFBS_cad
3L	10222184	3L_10222184_SNP [dm3] 3L_10229084_SNP [dm6]	T	G	4.672e^-4	0.9	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	10114480	2L_10114480_SNP [dm3] 2L_10114480_SNP [dm6]	A	G	4.675e^-4	0.9	INTRON CG44153 & 1 other
2R	9432086	2R_9432086_SNP [dm3] 2R_13544581_SNP [dm6]	C	A	4.677e^-4	0.9	INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	12596809	2L_12596809_SNP [dm3] 2L_12596809_SNP [dm6]	T	A	4.683e^-4	0.9	INTRON nub
2L	13746651	2L_13746651_SNP [dm3] 2L_13746651_SNP [dm6]	G	A	4.683e^-4	0.9	UPSTREAM TM9SF4 & 1 other DOWNSTREAM mir-1002 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	14054524	3R_14054524_SNP [dm3] 3R_18228802_SNP [dm6]	A	G	4.684e^-4	0.9	DOWNSTREAM Mdh2 INTERGENIC
2L	11463355	2L_11463355_SNP [dm3] 2L_11463355_SNP [dm6]	C	G	4.689e^-4	0.9	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11705063	2L_11705063_SNP [dm3] 2L_11705063_SNP [dm6]	T	A	4.691e^-4	0.9	INTERGENIC
3R	24388464	3R_24388464_INS [dm3] 3R_28562742_INS [dm6]	T	TTT	4.700e^-4	0.9	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5130324	2L_5130324_SNP [dm3] 2L_5130324_SNP [dm6]	A	T	4.707e^-4	0.901	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	15443733	3L_15443733_SNP [dm3] 3L_15450633_SNP [dm6]	G	A	4.737e^-4	0.904	INTERGENIC
2R	13335055	2R_13335055_SNP [dm3] 2R_17447550_SNP [dm6]	C	T	4.754e^-4	0.904	UPSTREAM mthl4 DOWNSTREAM mthl3 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	6312778	2L_6312778_SNP [dm3] 2L_6312778_SNP [dm6]	C	A	4.766e^-4	0.904	INTRON Ddr
2L	7080451	2L_7080451_SNP [dm3] 2L_7080451_SNP [dm6]	G	T	4.771e^-4	0.904	INTRON Pvf2
3R	17906774	3R_17906774_SNP [dm3] 3R_22081052_SNP [dm6]	T	C	4.782e^-4	0.904	INTRON CG13408	TF binding site mE1_TFBS_kn
3L	8224120	3L_8224120_SNP [dm3] 3L_8231020_SNP [dm6]	C	A	4.789e^-4	0.904	DOWNSTREAM eIF4E-3 & 1 other EXON CR43953
2R	17952454	2R_17952454_SNP [dm3] 2R_22064949_SNP [dm6]	G	A	4.802e^-4	0.904	INTRON Snp
2R	9344013	2R_9344013_SNP [dm3] 2R_13456508_SNP [dm6]	T	A	4.803e^-4	0.904	INTRON arr	TF binding site mE1_TFBS_cad
2R	9344023	2R_9344023_SNP [dm3] 2R_13456518_SNP [dm6]	G	T	4.803e^-4	0.904	INTRON arr	TF binding site mE1_TFBS_cad
2R	9344025	2R_9344025_SNP [dm3] 2R_13456520_SNP [dm6]	T	A	4.803e^-4	0.904	INTRON arr	TF binding site mE1_TFBS_cad
2R	9344028	2R_9344028_SNP [dm3] 2R_13456523_SNP [dm6]	A	T	4.803e^-4	0.904	INTRON arr	TF binding site mE1_TFBS_cad
3L	22583307	3L_22583307_SNP [dm3] 3L_22590207_SNP [dm6]	A	G	4.806e^-4	0.904	INTRON CG14459
2L	3230739	2L_3230739_SNP [dm3] 2L_3230739_SNP [dm6]	A	C	4.812e^-4	0.904	INTERGENIC
X	5888867	X_5888867_SNP [dm3] X_5994834_SNP [dm6]	G	C	4.822e^-4	0.904	INTERGENIC
3L	7690108	3L_7690108_SNP [dm3] 3L_7697008_SNP [dm6]	C	A	4.823e^-4	0.904	SYNONYMOUS_CODING Ank2 INTRON CG32373
3L	8005608	3L_8005608_SNP [dm3] 3L_8012508_SNP [dm6]	G	A	4.826e^-4	0.904	INTRON nmo
2L	13233925	2L_13233925_SNP [dm3] 2L_13233925_SNP [dm6]	G	T	4.826e^-4	0.904	UTR_3_PRIME CG15479 DOWNSTREAM Prosalpha6T	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10370519	3R_10370519_SNP [dm3] 3R_14544797_SNP [dm6]	T	C	4.828e^-4	0.904	INTRON Pde6
3R	17257527	3R_17257527_SNP [dm3] 3R_21431805_SNP [dm6]	G	A	4.829e^-4	0.904	INTRON lbl
2L	11699703	2L_11699703_SNP [dm3] 2L_11699703_SNP [dm6]	G	T	4.831e^-4	0.904	INTERGENIC

Missing results

By genomic position
Variant impact
Gene name

mn_Tot_Activity_Lead phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results