DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.384e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.02206
In_3R_P	0.03959

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	6.1123	0.0134
In_3R_P	8.0577	0.0178

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2291 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	14236115	3R_14236115_SNP [dm3] 3R_18410393_SNP [dm6]	C	T	3.407e^-7	0.268	SYNONYMOUS_CODING CG10864 UPSTREAM CG31122 INTRON CG31122	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15274470	2L_15274470_SNP [dm3] 2L_15274470_SNP [dm6]	T	A	5.789e^-7	0.268	INTRON UK114	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8573329	3L_8573329_SNP [dm3] 3L_8580229_SNP [dm6]	T	A	6.160e^-7	0.268	INTRON CG43078
3L	2527701	3L_2527701_INS [dm3] 3L_2527701_INS [dm6]	T	TAAATGAGACAC...	6.794e^-7	0.268	UPSTREAM CG32295 INTRON Spn
2L	14043327	2L_14043327_SNP [dm3] 2L_14043327_SNP [dm6]	T	C	8.637e^-7	0.268	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_dl
3L	3430815	3L_3430815_SNP [dm3] 3L_3430815_SNP [dm6]	G	A	9.132e^-7	0.268	INTRON eIF5B
3L	2527687	3L_2527687_SNP [dm3] 3L_2527687_SNP [dm6]	T	G	1.159e^-6	0.268	UPSTREAM CG32295 INTRON Spn
3L	3430842	3L_3430842_SNP [dm3] 3L_3430842_SNP [dm6]	A	G	1.217e^-6	0.268	INTRON eIF5B
3R	7596517	3R_7596517_INS [dm3] 3R_11770795_INS [dm6]	A	AA	1.285e^-6	0.268	INTRON l_3_neo38	TF binding site BDTNP1_TFBS_dl
3L	2870925	3L_2870925_SNP [dm3] 3L_2870925_SNP [dm6]	C	T	1.926e^-6	0.355	SYNONYMOUS_CODING CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2527828	3L_2527828_SNP [dm3] 3L_2527828_SNP [dm6]	G	T	2.080e^-6	0.355	UPSTREAM CG32295 INTRON Spn
3L	19421720	3L_19421720_SNP [dm3] 3L_19428620_SNP [dm6]	T	A	2.523e^-6	0.394	INTERGENIC
3L	2527689	3L_2527689_DEL [dm3] 3L_2527689_DEL [dm6]	TGGCAAATTA	T	2.763e^-6	0.399	UPSTREAM CG32295 INTRON Spn
2R	1674348	2R_1674348_SNP [dm3] 2R_5786843_SNP [dm6]	T	A	4.021e^-6	0.539	INTERGENIC
2L	6380628	2L_6380628_SNP [dm3] 2L_6380628_SNP [dm6]	C	T	4.804e^-6	0.601	UPSTREAM CG9507 INTRON CG42368
3R	15349165	3R_15349165_SNP [dm3] 3R_19523443_SNP [dm6]	T	A	6.274e^-6	0.644	INTRON Dys
3L	2870967	3L_2870967_DEL [dm3] 3L_2870967_DEL [dm6]	GGGG	G	6.694e^-6	0.644	CODON_DELETION CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18808666	3R_18808666_SNP [dm3] 3R_22982944_SNP [dm6]	G	C	6.831e^-6	0.644	INTRON Nha2
3R	4514208	3R_4514208_SNP [dm3] 3R_8688486_SNP [dm6]	T	A	7.158e^-6	0.644	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15261343	X_15261343_SNP [dm3] X_15367310_SNP [dm6]	G	A	7.169e^-6	0.644	INTRON acj6
2L	5904050	2L_5904050_SNP [dm3] 2L_5904050_SNP [dm6]	T	C	7.382e^-6	0.644	NON_SYNONYMOUS_CODING CG9021 DOWNSTREAM CR43808	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	4706940	X_4706940_SNP [dm3] X_4812907_SNP [dm6]	C	A	7.559e^-6	0.644	INTERGENIC
3L	10813788	3L_10813788_SNP [dm3] 3L_10820688_SNP [dm6]	C	T	8.233e^-6	0.671	INTERGENIC
3L	1545444	3L_1545444_SNP [dm3] 3L_1545444_SNP [dm6]	A	G	8.798e^-6	0.673	UPSTREAM Cct1 DOWNSTREAM CG7852 INTRON CG32313	TF binding site BDTNP1_TFBS_dl
3R	6953211	3R_6953211_SNP [dm3] 3R_11127489_SNP [dm6]	G	A	9.313e^-6	0.673	NON_SYNONYMOUS_CODING Ugt86Dd
2L	22360399	2L_22360399_SNP [dm3] 2L_22360399_SNP [dm6]	G	T	9.642e^-6	0.673	INTRON CG17018
3R	18808665	3R_18808665_SNP [dm3] 3R_22982943_SNP [dm6]	G	A	9.702e^-6	0.673	INTRON Nha2
3R	14460185	3R_14460185_SNP [dm3] 3R_18634463_SNP [dm6]	C	G	1.005e^-5	0.673	INTRON qin & 1 other
2R	1674333	2R_1674333_SNP [dm3] 2R_5786828_SNP [dm6]	A	G	1.130e^-5	0.703	INTERGENIC
X	14381999	X_14381999_INS [dm3] X_14487966_INS [dm6]	C	GCA	1.137e^-5	0.703	INTERGENIC
X	9633674	X_9633674_SNP [dm3] X_9739641_SNP [dm6]	C	A	1.189e^-5	0.703	INTRON Sp1	TF binding site BDTNP1_TFBS_twi
3R	15349166	3R_15349166_SNP [dm3] 3R_19523444_SNP [dm6]	C	A	1.257e^-5	0.703	INTRON Dys
3R	8934699	3R_8934699_SNP [dm3] 3R_13108977_SNP [dm6]	T	A	1.268e^-5	0.703	INTRON timeout
3L	9418883	3L_9418883_SNP [dm3] 3L_9425783_SNP [dm6]	A	C	1.311e^-5	0.703	INTRON CG3967	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9634827	3L_9634827_SNP [dm3] 3L_9641727_SNP [dm6]	C	T	1.312e^-5	0.703	SYNONYMOUS_CODING CG18180 INTRON fry	TF binding site mE1_TFBS_cad
3L	6874073	3L_6874073_SNP [dm3] 3L_6880973_SNP [dm6]	C	T	1.395e^-5	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14469806	X_14469806_SNP [dm3] X_14575773_SNP [dm6]	T	A	1.487e^-5	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	18979494	3R_18979494_SNP [dm3] 3R_23153772_SNP [dm6]	C	T	1.507e^-5	0.728	UTR_3_PRIME unk
2L	17391586	2L_17391586_SNP [dm3] 2L_17391586_SNP [dm6]	A	C	1.526e^-5	0.728	INTRON CLIP-190
3R	21657622	3R_21657622_SNP [dm3] 3R_25831900_SNP [dm6]	A	G	1.552e^-5	0.728	UPSTREAM Mst57Db & 2 others INTERGENIC
2L	7340131	2L_7340131_SNP [dm3] 2L_7340131_SNP [dm6]	G	A	1.594e^-5	0.729	INTRON Wnt6	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	1003968	3L_1003968_SNP [dm3] 3L_1003968_SNP [dm6]	G	T	1.633e^-5	0.729	INTRON trio	TF binding site mE1_TFBS_chinmo
2R	18240209	2R_18240209_SNP [dm3] 2R_22352704_SNP [dm6]	G	A	1.728e^-5	0.754	INTRON Liprin-gamma
3R	22441123	3R_22441123_SNP [dm3] 3R_26615401_SNP [dm6]	A	G	1.858e^-5	0.777	INTERGENIC
3L	9418884	3L_9418884_SNP [dm3] 3L_9425784_SNP [dm6]	G	T	1.956e^-5	0.777	INTRON CG3967	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6874096	3L_6874096_SNP [dm3] 3L_6880996_SNP [dm6]	A	T	2.069e^-5	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6987004	3R_6987004_SNP [dm3] 3R_11161282_SNP [dm6]	C	T	2.096e^-5	0.777	SYNONYMOUS_CODING CG4757
3R	20984490	3R_20984490_SNP [dm3] 3R_25158768_SNP [dm6]	A	G	2.099e^-5	0.777	INTERGENIC
3R	22159225	3R_22159225_SNP [dm3] 3R_26333503_SNP [dm6]	C	G	2.142e^-5	0.777	INTRON CG33970
3L	4787040	3L_4787040_SNP [dm3] 3L_4787040_SNP [dm6]	A	G	2.232e^-5	0.777	INTRON RhoGEF64C
3L	9198669	3L_9198669_SNP [dm3] 3L_9205569_SNP [dm6]	T	G	2.239e^-5	0.777	INTRON Slc45-1	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
2L	14094710	2L_14094710_SNP [dm3] 2L_14094710_SNP [dm6]	C	A	2.368e^-5	0.777	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	18178017	2L_18178017_SNP [dm3] 2L_18178017_SNP [dm6]	A	G	2.385e^-5	0.777	INTRON CG42750
3R	9740575	3R_9740575_SNP [dm3] 3R_13914853_SNP [dm6]	A	C	2.524e^-5	0.777	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9198674	3L_9198674_SNP [dm3] 3L_9205574_SNP [dm6]	T	C	2.527e^-5	0.777	INTRON Slc45-1	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
3R	21657604	3R_21657604_SNP [dm3] 3R_25831882_SNP [dm6]	C	T	2.532e^-5	0.777	UTR_5_PRIME Mst57Da UPSTREAM Mst57Db & 1 other
3R	17569064	3R_17569064_SNP [dm3] 3R_21743342_SNP [dm6]	A	G	2.537e^-5	0.777	SYNONYMOUS_CODING CG5849 UTR_3_PRIME CG5849	TF binding site mE1_TFBS_sens
2L	6380568	2L_6380568_SNP [dm3] 2L_6380568_SNP [dm6]	A	G	2.556e^-5	0.777	UPSTREAM CG9507 INTRON CG42368
3R	6953259	3R_6953259_SNP [dm3] 3R_11127537_SNP [dm6]	A	T	2.597e^-5	0.777	NON_SYNONYMOUS_CODING Ugt86Dd
X	17178997	X_17178997_SNP [dm3] X_17284964_SNP [dm6]	A	T	2.653e^-5	0.777	UPSTREAM CG8661 DOWNSTREAM Fim INTRON CG5445
3L	3943048	3L_3943048_SNP [dm3] 3L_3943048_SNP [dm6]	T	G	2.683e^-5	0.777	UTR_5_PRIME CG14982 UPSTREAM CG10863
2L	14094539	2L_14094539_SNP [dm3] 2L_14094539_SNP [dm6]	G	C	2.694e^-5	0.777	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	16010255	X_16010255_SNP [dm3] X_16116222_SNP [dm6]	C	T	2.736e^-5	0.777	INTERGENIC	transposable element FlyBase
2L	9593563	2L_9593563_SNP [dm3] 2L_9593563_SNP [dm6]	G	A	2.759e^-5	0.777	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	6376315	2L_6376315_SNP [dm3] 2L_6376315_SNP [dm6]	T	C	2.825e^-5	0.777	SYNONYMOUS_CODING slam	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	14095609	2L_14095609_SNP [dm3] 2L_14095609_SNP [dm6]	G	T	2.843e^-5	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9443770	3R_9443770_SNP [dm3] 3R_13618048_SNP [dm6]	T	A	2.889e^-5	0.777	EXON CR45680
2R	15974386	2R_15974386_SNP [dm3] 2R_20086881_SNP [dm6]	G	A	2.896e^-5	0.777	DOWNSTREAM CR44632 INTERGENIC
X	17179004	X_17179004_SNP [dm3] X_17284971_SNP [dm6]	C	G	2.944e^-5	0.777	UPSTREAM CG8661 DOWNSTREAM Fim INTRON CG5445	insulator Insulator_Class_II.mE01
3L	3430805	3L_3430805_DEL [dm3] 3L_3430805_DEL [dm6]	CTTT	C	3.036e^-5	0.777	INTRON eIF5B
3R	4514168	3R_4514168_SNP [dm3] 3R_8688446_SNP [dm6]	C	G	3.089e^-5	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6873922	3L_6873922_SNP [dm3] 3L_6880822_SNP [dm6]	A	T	3.095e^-5	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6380597	2L_6380597_SNP [dm3] 2L_6380597_SNP [dm6]	A	G	3.104e^-5	0.777	UPSTREAM CG9507 INTRON CG42368
2L	7244598	2L_7244598_SNP [dm3] 2L_7244598_SNP [dm6]	A	G	3.132e^-5	0.777	INTRON Ndae1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	8980298	3R_8980298_SNP [dm3] 3R_13154576_SNP [dm6]	C	A	3.146e^-5	0.777	UTR_5_PRIME 2mit INTRON timeout EXON CR45109
2L	6394739	2L_6394739_SNP [dm3] 2L_6394739_SNP [dm6]	C	G	3.214e^-5	0.777	INTRON CG42368
2L	14330384	2L_14330384_SNP [dm3] 2L_14330384_SNP [dm6]	C	T	3.219e^-5	0.777	SYNONYMOUS_CODING ms_2_34Fe	TF binding site mE1_TFBS_cad
X	4706894	X_4706894_SNP [dm3] X_4812861_SNP [dm6]	G	A	3.249e^-5	0.777	INTERGENIC
2R	18674333	2R_18674333_SNP [dm3] 2R_22786828_SNP [dm6]	C	T	3.307e^-5	0.777	INTRON CG42260
2R	7843258	2R_7843258_SNP [dm3] 2R_11955753_SNP [dm6]	T	G	3.346e^-5	0.777	INTRON CG13188
2L	22321657	2L_22321657_SNP [dm3] 2L_22321657_SNP [dm6]	G	A	3.374e^-5	0.777	INTRON CG17018	transposable element FlyBase
3L	22510796	3L_22510796_SNP [dm3] 3L_22517696_SNP [dm6]	C	T	3.458e^-5	0.777	DOWNSTREAM mir-957 INTERGENIC
3R	18075673	3R_18075673_SNP [dm3] 3R_22249951_SNP [dm6]	T	C	3.465e^-5	0.777	INTRON SKIP
2L	9719424	2L_9719424_SNP [dm3] 2L_9719424_SNP [dm6]	T	A	3.480e^-5	0.777	INTRON Nckx30C
3R	9443875	3R_9443875_SNP [dm3] 3R_13618153_SNP [dm6]	T	A	3.608e^-5	0.792	EXON CR45680
2R	12783740	2R_12783740_SNP [dm3] 2R_16896235_SNP [dm6]	C	T	3.666e^-5	0.792	UPSTREAM mir-990 & 1 other INTERGENIC
2L	14094632	2L_14094632_SNP [dm3] 2L_14094632_SNP [dm6]	G	A	3.706e^-5	0.792	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	2069817	X_2069817_SNP [dm3] X_2175784_SNP [dm6]	A	T	3.829e^-5	0.792	UPSTREAM Cyp4d2 & 1 other DOWNSTREAM CR44690 EXON CR45479
2L	7338374	2L_7338374_SNP [dm3] 2L_7338374_SNP [dm6]	C	G	3.840e^-5	0.792	INTRON Wnt6
2L	14094525	2L_14094525_SNP [dm3] 2L_14094525_SNP [dm6]	T	G	3.910e^-5	0.792	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	7341309	2L_7341309_SNP [dm3] 2L_7341309_SNP [dm6]	T	A	3.916e^-5	0.792	INTRON Wnt6	TF binding site mE1_TFBS_sbb
2L	6373216	2L_6373216_SNP [dm3] 2L_6373216_SNP [dm6]	G	T	3.998e^-5	0.792	UPSTREAM slam INTRON slam	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2086116	X_2086116_SNP [dm3] X_2192083_SNP [dm6]	A	C	4.016e^-5	0.792	UTR_3_PRIME CG14053 INTRON Mct1	TF binding site mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
2L	22436687	2L_22436687_SNP [dm3] 2L_22543955_SNP [dm6]	A	T	4.016e^-5	0.792	INTRON CG17490
2L	18142071	2L_18142071_SNP [dm3] 2L_18142071_SNP [dm6]	C	G	4.108e^-5	0.792	NON_SYNONYMOUS_CODING Socs36E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16010249	X_16010249_SNP [dm3] X_16116216_SNP [dm6]	T	G	4.180e^-5	0.792	INTERGENIC
2R	18374248	2R_18374248_SNP [dm3] 2R_22486743_SNP [dm6]	C	T	4.241e^-5	0.792	NON_SYNONYMOUS_CODING CG4554
3R	21656748	3R_21656748_SNP [dm3] 3R_25831026_SNP [dm6]	G	A	4.273e^-5	0.792	UPSTREAM Sfp96F & 1 other DOWNSTREAM Mst57Da INTERGENIC	regulatory region REDfly_CRMs
2L	22341251	2L_22341251_SNP [dm3] 2L_22341251_SNP [dm6]	A	T	4.327e^-5	0.792	INTRON CG17018 EXON CR43359
3R	22159218	3R_22159218_SNP [dm3] 3R_26333496_SNP [dm6]	A	G	4.469e^-5	0.792	INTRON CG33970

Showing 1 to 100 of 1,000 entries

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GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.214e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.02015
In_3R_P	0.01631

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	4.8985	0.0269
In_3R_P	10.5943	0.005

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2202 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	7843258	2R_7843258_SNP [dm3] 2R_11955753_SNP [dm6]	T	G	2.749e^-7	0.516	INTRON CG13188
X	8671824	X_8671824_SNP [dm3] X_8777791_SNP [dm6]	T	G	2.349e^-6	0.658	INTRON Lim1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	9926663	2L_9926663_SNP [dm3] 2L_9926663_SNP [dm6]	G	C	3.324e^-6	0.658	SYNONYMOUS_CODING CG42366	TF binding site mE1_TFBS_cad
2L	7774699	2L_7774699_SNP [dm3] 2L_7774699_SNP [dm6]	C	G	4.913e^-6	0.658	UTR_3_PRIME CG7191
3R	7000716	3R_7000716_SNP [dm3] 3R_11174994_SNP [dm6]	C	A	4.916e^-6	0.658	UPSTREAM Ugt86Dh INTRON Ugt86Dj
2L	9186931	2L_9186931_SNP [dm3] 2L_9186931_SNP [dm6]	T	G	6.071e^-6	0.658	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9563013	3L_9563013_SNP [dm3] 3L_9569913_SNP [dm6]	G	A	6.117e^-6	0.658	INTRON CG42673
2L	11205704	2L_11205704_SNP [dm3] 2L_11205704_SNP [dm6]	G	A	6.787e^-6	0.658	EXON CR43859
2L	14500933	2L_14500933_SNP [dm3] 2L_14500933_SNP [dm6]	C	G	6.994e^-6	0.658	INTERGENIC	silencer mE1_HDAC_PRE
3R	7000748	3R_7000748_SNP [dm3] 3R_11175026_SNP [dm6]	A	T	7.362e^-6	0.658	UPSTREAM Ugt86Dh INTRON Ugt86Dj
2L	17837868	2L_17837868_SNP [dm3] 2L_17837868_SNP [dm6]	C	G	7.797e^-6	0.658	INTRON CadN2
3L	3430842	3L_3430842_SNP [dm3] 3L_3430842_SNP [dm6]	A	G	8.253e^-6	0.658	INTRON eIF5B
2L	8169126	2L_8169126_SNP [dm3] 2L_8169126_SNP [dm6]	A	G	8.300e^-6	0.658	INTRON Piezo
X	13122552	X_13122552_SNP [dm3] X_13228519_SNP [dm6]	C	T	8.948e^-6	0.658	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14460185	3R_14460185_SNP [dm3] 3R_18634463_SNP [dm6]	C	G	9.513e^-6	0.658	INTRON qin & 1 other
3R	14236115	3R_14236115_SNP [dm3] 3R_18410393_SNP [dm6]	C	T	9.684e^-6	0.658	SYNONYMOUS_CODING CG10864 UPSTREAM CG31122 INTRON CG31122	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16876049	3L_16876049_SNP [dm3] 3L_16882949_SNP [dm6]	A	G	1.003e^-5	0.658	INTRON Lmpt
2L	18178712	2L_18178712_SNP [dm3] 2L_18178712_SNP [dm6]	A	C	1.007e^-5	0.658	INTRON CG42750
2L	8781819	2L_8781819_SNP [dm3] 2L_8781819_SNP [dm6]	T	C	1.013e^-5	0.658	UTR_3_PRIME CG42710 UPSTREAM CG9468
3R	15363285	3R_15363285_SNP [dm3] 3R_19537563_SNP [dm6]	C	G	1.041e^-5	0.658	INTRON Dys
2R	11663134	2R_11663134_SNP [dm3] 2R_15775629_SNP [dm6]	T	A	1.044e^-5	0.658	INTRON Zasp52	TF binding site mE1_TFBS_chinmo
3L	6876359	3L_6876359_SNP [dm3] 3L_6883259_SNP [dm6]	C	G	1.089e^-5	0.658	DOWNSTREAM CR45416 INTERGENIC
3R	6995450	3R_6995450_SNP [dm3] 3R_11169728_SNP [dm6]	C	T	1.097e^-5	0.658	SYNONYMOUS_CODING Ugt35b
3R	8939333	3R_8939333_SNP [dm3] 3R_13113611_SNP [dm6]	A	T	1.127e^-5	0.658	INTRON timeout
2R	11663131	2R_11663131_SNP [dm3] 2R_15775626_SNP [dm6]	T	A	1.246e^-5	0.658	INTRON Zasp52	TF binding site mE1_TFBS_chinmo
3R	15349165	3R_15349165_SNP [dm3] 3R_19523443_SNP [dm6]	T	A	1.264e^-5	0.658	INTRON Dys
3R	8940399	3R_8940399_SNP [dm3] 3R_13114677_SNP [dm6]	T	C	1.286e^-5	0.658	INTRON timeout
3L	7109363	3L_7109363_SNP [dm3] 3L_7116263_SNP [dm6]	G	A	1.322e^-5	0.658	INTRON form3
3L	6876454	3L_6876454_SNP [dm3] 3L_6883354_SNP [dm6]	A	G	1.392e^-5	0.658	EXON CR45416
X	18439213	X_18439213_SNP [dm3] X_18545180_SNP [dm6]	A	G	1.443e^-5	0.658	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6362886	2L_6362886_SNP [dm3] 2L_6362886_SNP [dm6]	A	C	1.519e^-5	0.658	INTERGENIC
3L	17723731	3L_17723731_SNP [dm3] 3L_17730631_SNP [dm6]	A	T	1.536e^-5	0.658	INTRON Ccn
2L	8781831	2L_8781831_SNP [dm3] 2L_8781831_SNP [dm6]	G	C	1.551e^-5	0.658	UTR_3_PRIME CG42710 UPSTREAM CG9468
3R	8967667	3R_8967667_SNP [dm3] 3R_13141945_SNP [dm6]	A	G	1.556e^-5	0.658	INTRON timeout & 2 others
3R	7006095	3R_7006095_DEL [dm3] 3R_11180373_DEL [dm6]	AGAGGAC	T	1.589e^-5	0.658	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19905255	3R_19905255_SNP [dm3] 3R_24079533_SNP [dm6]	A	C	1.654e^-5	0.658	INTRON 4EHP
2R	11662923	2R_11662923_SNP [dm3] 2R_15775418_SNP [dm6]	G	A	1.671e^-5	0.658	SYNONYMOUS_CODING Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23605840	3R_23605840_SNP [dm3] 3R_27780118_SNP [dm6]	T	G	1.700e^-5	0.658	INTRON CG34353
3R	7032434	3R_7032434_SNP [dm3] 3R_11206712_SNP [dm6]	G	A	1.734e^-5	0.658	INTRON cu
3R	7032497	3R_7032497_SNP [dm3] 3R_11206775_SNP [dm6]	T	A	1.798e^-5	0.658	INTRON cu
3R	8944428	3R_8944428_SNP [dm3] 3R_13118706_SNP [dm6]	T	G	1.818e^-5	0.658	INTRON timeout
3L	3806465	3L_3806465_SNP [dm3] 3L_3806465_SNP [dm6]	T	A	1.843e^-5	0.658	UPSTREAM IntS10 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	7032485	3R_7032485_SNP [dm3] 3R_11206763_SNP [dm6]	T	C	1.901e^-5	0.658	INTRON cu
3L	17723778	3L_17723778_DEL [dm3] 3L_17730678_DEL [dm6]	GAGGAAA	G	1.919e^-5	0.658	INTRON Ccn
3L	17723790	3L_17723790_SNP [dm3] 3L_17730690_SNP [dm6]	C	A	1.919e^-5	0.658	INTRON Ccn
3L	10209516	3L_10209516_SNP [dm3] 3L_10216416_SNP [dm6]	A	G	1.981e^-5	0.658	SYNONYMOUS_CODING CG8065
3R	7035761	3R_7035761_SNP [dm3] 3R_11210039_SNP [dm6]	T	G	1.987e^-5	0.658	UPSTREAM Tctp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	18436639	2R_18436639_SNP [dm3] 2R_22549134_SNP [dm6]	A	C	2.003e^-5	0.658	UPSTREAM CG6018 INTRON px
3R	11631769	3R_11631769_SNP [dm3] 3R_15806047_SNP [dm6]	T	C	2.085e^-5	0.658	INTRON alpha-Man-IIb
3L	22533946	3L_22533946_SNP [dm3] 3L_22540846_SNP [dm6]	G	T	2.090e^-5	0.658	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6876378	3L_6876378_DEL [dm3] 3L_6883278_DEL [dm6]	TT	T	2.113e^-5	0.658	DOWNSTREAM CR45416 INTERGENIC
3R	7596517	3R_7596517_INS [dm3] 3R_11770795_INS [dm6]	A	AA	2.150e^-5	0.658	INTRON l_3_neo38	TF binding site BDTNP1_TFBS_dl
3R	8951235	3R_8951235_SNP [dm3] 3R_13125513_SNP [dm6]	C	T	2.201e^-5	0.658	UTR_3_PRIME 2mit DOWNSTREAM 2mit INTRON timeout
2R	16178623	2R_16178623_SNP [dm3] 2R_20291118_SNP [dm6]	G	T	2.212e^-5	0.658	DOWNSTREAM CkIIbeta2 INTRON Cpr56F
3R	7033253	3R_7033253_SNP [dm3] 3R_11207531_SNP [dm6]	T	C	2.364e^-5	0.658	INTRON cu
3R	6996105	3R_6996105_SNP [dm3] 3R_11170383_SNP [dm6]	C	A	2.364e^-5	0.658	UPSTREAM Ugt35b DOWNSTREAM Ugt35a INTERGENIC
3R	10479369	3R_10479369_SNP [dm3] 3R_14653647_SNP [dm6]	T	A	2.412e^-5	0.658	INTRON l_3_L1231	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18559148	3L_18559148_SNP [dm3] 3L_18566048_SNP [dm6]	C	A	2.431e^-5	0.658	INTRON AstC-R1
3R	7040338	3R_7040338_SNP [dm3] 3R_11214616_SNP [dm6]	T	C	2.444e^-5	0.658	UPSTREAM ZnT86D DOWNSTREAM RpS25 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
3R	8939969	3R_8939969_SNP [dm3] 3R_13114247_SNP [dm6]	A	G	2.465e^-5	0.658	SPLICE_SITE_REGION timeout INTRON timeout
2R	5114750	2R_5114750_SNP [dm3] 2R_9227245_SNP [dm6]	C	G	2.572e^-5	0.658	DOWNSTREAM hig INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13122387	X_13122387_SNP [dm3] X_13228354_SNP [dm6]	A	C	2.574e^-5	0.658	INTRON mew	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21083395	3R_21083395_SNP [dm3] 3R_25257673_SNP [dm6]	C	A	2.597e^-5	0.658	NON_SYNONYMOUS_CODING Nup358	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	2302364	X_2302364_SNP [dm3] X_2408331_SNP [dm6]	A	G	2.602e^-5	0.658	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	15349166	3R_15349166_SNP [dm3] 3R_19523444_SNP [dm6]	C	A	2.609e^-5	0.658	INTRON Dys
3L	16876018	3L_16876018_SNP [dm3] 3L_16882918_SNP [dm6]	G	A	2.626e^-5	0.658	INTRON Lmpt
3R	7032889	3R_7032889_SNP [dm3] 3R_11207167_SNP [dm6]	G	C	2.634e^-5	0.658	INTRON cu
2R	18436629	2R_18436629_INS [dm3] 2R_22549124_INS [dm6]	C	CCCCACTCC	2.646e^-5	0.658	UPSTREAM CG6018 INTRON px
X	18908739	X_18908739_SNP [dm3] X_19014706_SNP [dm6]	A	C	2.794e^-5	0.658	INTRON CG43759	TF binding site mE1_TFBS_cad
3L	3806491	3L_3806491_SNP [dm3] 3L_3806491_SNP [dm6]	G	A	2.806e^-5	0.658	UPSTREAM IntS10 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3806497	3L_3806497_SNP [dm3] 3L_3806497_SNP [dm6]	T	C	2.806e^-5	0.658	UPSTREAM IntS10 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3806498	3L_3806498_SNP [dm3] 3L_3806498_SNP [dm6]	G	A	2.806e^-5	0.658	UPSTREAM IntS10 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2248949	2L_2248949_SNP [dm3] 2L_2248949_SNP [dm6]	T	G	2.838e^-5	0.658	INTERGENIC
3R	8944546	3R_8944546_SNP [dm3] 3R_13118824_SNP [dm6]	C	T	2.853e^-5	0.658	INTRON timeout
3L	7838629	3L_7838629_SNP [dm3] 3L_7845529_SNP [dm6]	A	T	2.891e^-5	0.658	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
3R	23270644	3R_23270644_SNP [dm3] 3R_27444922_SNP [dm6]	T	G	2.892e^-5	0.658	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7708298	2L_7708298_SNP [dm3] 2L_7708298_SNP [dm6]	G	C	2.909e^-5	0.658	SYNONYMOUS_CODING Tep3 EXON CR44990
3L	9198674	3L_9198674_SNP [dm3] 3L_9205574_SNP [dm6]	T	C	2.911e^-5	0.658	INTRON Slc45-1	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
3R	7033012	3R_7033012_SNP [dm3] 3R_11207290_SNP [dm6]	G	A	2.920e^-5	0.658	INTRON cu
2L	13424275	2L_13424275_SNP [dm3] 2L_13424275_SNP [dm6]	A	G	3.008e^-5	0.658	INTRON CG42784
3R	7023602	3R_7023602_SNP [dm3] 3R_11197880_SNP [dm6]	T	C	3.010e^-5	0.658	DOWNSTREAM CG18577 INTRON cu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6106122	2L_6106122_SNP [dm3] 2L_6106122_SNP [dm6]	G	T	3.056e^-5	0.658	INTRON stai
3R	26020786	3R_26020786_SNP [dm3] 3R_30195064_SNP [dm6]	A	G	3.074e^-5	0.658	NON_SYNONYMOUS_CODING CG15531
2L	4364375	2L_4364375_SNP [dm3] 2L_4364375_SNP [dm6]	T	C	3.087e^-5	0.658	UPSTREAM CR45363 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8671804	X_8671804_SNP [dm3] X_8777771_SNP [dm6]	T	A	3.093e^-5	0.658	INTRON Lim1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	9108253	2R_9108253_INS [dm3] 2R_13220748_INS [dm6]	T	TTT	3.107e^-5	0.658	UPSTREAM CG4646 DOWNSTREAM Fsn INTRON CG17059	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
3R	6432589	3R_6432589_SNP [dm3] 3R_10606867_SNP [dm6]	G	T	3.119e^-5	0.658	INTRON hth	TF binding site mE1_TFBS_HSA
2R	15790582	2R_15790582_SNP [dm3] 2R_19903077_SNP [dm6]	G	C	3.138e^-5	0.658	INTERGENIC
X	13122479	X_13122479_SNP [dm3] X_13228446_SNP [dm6]	G	A	3.162e^-5	0.658	INTRON mew	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18405347	X_18405347_SNP [dm3] X_18511314_SNP [dm6]	A	G	3.182e^-5	0.658	INTRON Ggt-1
2L	14014336	2L_14014336_SNP [dm3] 2L_14014336_SNP [dm6]	C	A	3.221e^-5	0.658	INTRON bgm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	3806488	3L_3806488_SNP [dm3] 3L_3806488_SNP [dm6]	A	G	3.229e^-5	0.658	UPSTREAM IntS10 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	18264198	3R_18264198_SNP [dm3] 3R_22438476_SNP [dm6]	A	G	3.281e^-5	0.662	INTERGENIC
3R	21657851	3R_21657851_SNP [dm3] 3R_25832129_SNP [dm6]	C	T	3.397e^-5	0.665	UPSTREAM alpha4GT2 & 1 other INTERGENIC
X	4563499	X_4563499_SNP [dm3] X_4669466_SNP [dm6]	A	G	3.419e^-5	0.665	INTRON rap	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	1394167	X_1394167_SNP [dm3] X_1500134_SNP [dm6]	G	A	3.422e^-5	0.665	INTRON inc & 1 other	TF binding site mE1_TFBS_chinmo
3R	8967720	3R_8967720_SNP [dm3] 3R_13141998_SNP [dm6]	C	T	3.450e^-5	0.665	INTRON timeout & 2 others
3L	9198669	3L_9198669_SNP [dm3] 3L_9205569_SNP [dm6]	T	G	3.484e^-5	0.665	INTRON Slc45-1	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
3L	10137979	3L_10137979_SNP [dm3] 3L_10144879_SNP [dm6]	G	A	3.588e^-5	0.665	INTERGENIC
X	13122361	X_13122361_SNP [dm3] X_13228328_SNP [dm6]	C	A	3.618e^-5	0.665	INTRON mew	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA

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Missing results

By genomic position
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mn_Tot_Activity phenotype

Phenotype distribution and association to known covariates

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GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results