DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.384e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.02206
In_3R_P	0.03959

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	6.1123	0.0134
In_3R_P	8.0577	0.0178

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2291 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	14236115	3R_14236115_SNP [dm3] 3R_18410393_SNP [dm6]	C	T	3.407e^-7	0.268	SYNONYMOUS_CODING CG10864 UPSTREAM CG31122 INTRON CG31122	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15274470	2L_15274470_SNP [dm3] 2L_15274470_SNP [dm6]	T	A	5.789e^-7	0.268	INTRON UK114	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8573329	3L_8573329_SNP [dm3] 3L_8580229_SNP [dm6]	T	A	6.160e^-7	0.268	INTRON CG43078
3L	2527701	3L_2527701_INS [dm3] 3L_2527701_INS [dm6]	T	TAAATGAGACAC...	6.794e^-7	0.268	UPSTREAM CG32295 INTRON Spn
2L	14043327	2L_14043327_SNP [dm3] 2L_14043327_SNP [dm6]	T	C	8.637e^-7	0.268	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_dl
3L	3430815	3L_3430815_SNP [dm3] 3L_3430815_SNP [dm6]	G	A	9.132e^-7	0.268	INTRON eIF5B
3L	2527687	3L_2527687_SNP [dm3] 3L_2527687_SNP [dm6]	T	G	1.159e^-6	0.268	UPSTREAM CG32295 INTRON Spn
3L	3430842	3L_3430842_SNP [dm3] 3L_3430842_SNP [dm6]	A	G	1.217e^-6	0.268	INTRON eIF5B
3R	7596517	3R_7596517_INS [dm3] 3R_11770795_INS [dm6]	A	AA	1.285e^-6	0.268	INTRON l_3_neo38	TF binding site BDTNP1_TFBS_dl
3L	2870925	3L_2870925_SNP [dm3] 3L_2870925_SNP [dm6]	C	T	1.926e^-6	0.355	SYNONYMOUS_CODING CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2527828	3L_2527828_SNP [dm3] 3L_2527828_SNP [dm6]	G	T	2.080e^-6	0.355	UPSTREAM CG32295 INTRON Spn
3L	19421720	3L_19421720_SNP [dm3] 3L_19428620_SNP [dm6]	T	A	2.523e^-6	0.394	INTERGENIC
3L	2527689	3L_2527689_DEL [dm3] 3L_2527689_DEL [dm6]	TGGCAAATTA	T	2.763e^-6	0.399	UPSTREAM CG32295 INTRON Spn
2R	1674348	2R_1674348_SNP [dm3] 2R_5786843_SNP [dm6]	T	A	4.021e^-6	0.539	INTERGENIC
2L	6380628	2L_6380628_SNP [dm3] 2L_6380628_SNP [dm6]	C	T	4.804e^-6	0.601	UPSTREAM CG9507 INTRON CG42368
3R	15349165	3R_15349165_SNP [dm3] 3R_19523443_SNP [dm6]	T	A	6.274e^-6	0.644	INTRON Dys
3L	2870967	3L_2870967_DEL [dm3] 3L_2870967_DEL [dm6]	GGGG	G	6.694e^-6	0.644	CODON_DELETION CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18808666	3R_18808666_SNP [dm3] 3R_22982944_SNP [dm6]	G	C	6.831e^-6	0.644	INTRON Nha2
3R	4514208	3R_4514208_SNP [dm3] 3R_8688486_SNP [dm6]	T	A	7.158e^-6	0.644	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15261343	X_15261343_SNP [dm3] X_15367310_SNP [dm6]	G	A	7.169e^-6	0.644	INTRON acj6
2L	5904050	2L_5904050_SNP [dm3] 2L_5904050_SNP [dm6]	T	C	7.382e^-6	0.644	NON_SYNONYMOUS_CODING CG9021 DOWNSTREAM CR43808	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	4706940	X_4706940_SNP [dm3] X_4812907_SNP [dm6]	C	A	7.559e^-6	0.644	INTERGENIC
3L	10813788	3L_10813788_SNP [dm3] 3L_10820688_SNP [dm6]	C	T	8.233e^-6	0.671	INTERGENIC
3L	1545444	3L_1545444_SNP [dm3] 3L_1545444_SNP [dm6]	A	G	8.798e^-6	0.673	UPSTREAM Cct1 DOWNSTREAM CG7852 INTRON CG32313	TF binding site BDTNP1_TFBS_dl
3R	6953211	3R_6953211_SNP [dm3] 3R_11127489_SNP [dm6]	G	A	9.313e^-6	0.673	NON_SYNONYMOUS_CODING Ugt86Dd
2L	22360399	2L_22360399_SNP [dm3] 2L_22360399_SNP [dm6]	G	T	9.642e^-6	0.673	INTRON CG17018
3R	18808665	3R_18808665_SNP [dm3] 3R_22982943_SNP [dm6]	G	A	9.702e^-6	0.673	INTRON Nha2
3R	14460185	3R_14460185_SNP [dm3] 3R_18634463_SNP [dm6]	C	G	1.005e^-5	0.673	INTRON qin & 1 other
2R	1674333	2R_1674333_SNP [dm3] 2R_5786828_SNP [dm6]	A	G	1.130e^-5	0.703	INTERGENIC
X	14381999	X_14381999_INS [dm3] X_14487966_INS [dm6]	C	GCA	1.137e^-5	0.703	INTERGENIC
X	9633674	X_9633674_SNP [dm3] X_9739641_SNP [dm6]	C	A	1.189e^-5	0.703	INTRON Sp1	TF binding site BDTNP1_TFBS_twi
3R	15349166	3R_15349166_SNP [dm3] 3R_19523444_SNP [dm6]	C	A	1.257e^-5	0.703	INTRON Dys
3R	8934699	3R_8934699_SNP [dm3] 3R_13108977_SNP [dm6]	T	A	1.268e^-5	0.703	INTRON timeout
3L	9418883	3L_9418883_SNP [dm3] 3L_9425783_SNP [dm6]	A	C	1.311e^-5	0.703	INTRON CG3967	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9634827	3L_9634827_SNP [dm3] 3L_9641727_SNP [dm6]	C	T	1.312e^-5	0.703	SYNONYMOUS_CODING CG18180 INTRON fry	TF binding site mE1_TFBS_cad
3L	6874073	3L_6874073_SNP [dm3] 3L_6880973_SNP [dm6]	C	T	1.395e^-5	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14469806	X_14469806_SNP [dm3] X_14575773_SNP [dm6]	T	A	1.487e^-5	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	18979494	3R_18979494_SNP [dm3] 3R_23153772_SNP [dm6]	C	T	1.507e^-5	0.728	UTR_3_PRIME unk
2L	17391586	2L_17391586_SNP [dm3] 2L_17391586_SNP [dm6]	A	C	1.526e^-5	0.728	INTRON CLIP-190
3R	21657622	3R_21657622_SNP [dm3] 3R_25831900_SNP [dm6]	A	G	1.552e^-5	0.728	UPSTREAM Mst57Db & 2 others INTERGENIC
2L	7340131	2L_7340131_SNP [dm3] 2L_7340131_SNP [dm6]	G	A	1.594e^-5	0.729	INTRON Wnt6	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	1003968	3L_1003968_SNP [dm3] 3L_1003968_SNP [dm6]	G	T	1.633e^-5	0.729	INTRON trio	TF binding site mE1_TFBS_chinmo
2R	18240209	2R_18240209_SNP [dm3] 2R_22352704_SNP [dm6]	G	A	1.728e^-5	0.754	INTRON Liprin-gamma
3R	22441123	3R_22441123_SNP [dm3] 3R_26615401_SNP [dm6]	A	G	1.858e^-5	0.777	INTERGENIC
3L	9418884	3L_9418884_SNP [dm3] 3L_9425784_SNP [dm6]	G	T	1.956e^-5	0.777	INTRON CG3967	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6874096	3L_6874096_SNP [dm3] 3L_6880996_SNP [dm6]	A	T	2.069e^-5	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6987004	3R_6987004_SNP [dm3] 3R_11161282_SNP [dm6]	C	T	2.096e^-5	0.777	SYNONYMOUS_CODING CG4757
3R	20984490	3R_20984490_SNP [dm3] 3R_25158768_SNP [dm6]	A	G	2.099e^-5	0.777	INTERGENIC
3R	22159225	3R_22159225_SNP [dm3] 3R_26333503_SNP [dm6]	C	G	2.142e^-5	0.777	INTRON CG33970
3L	4787040	3L_4787040_SNP [dm3] 3L_4787040_SNP [dm6]	A	G	2.232e^-5	0.777	INTRON RhoGEF64C
3L	9198669	3L_9198669_SNP [dm3] 3L_9205569_SNP [dm6]	T	G	2.239e^-5	0.777	INTRON Slc45-1	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
2L	14094710	2L_14094710_SNP [dm3] 2L_14094710_SNP [dm6]	C	A	2.368e^-5	0.777	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	18178017	2L_18178017_SNP [dm3] 2L_18178017_SNP [dm6]	A	G	2.385e^-5	0.777	INTRON CG42750
3R	9740575	3R_9740575_SNP [dm3] 3R_13914853_SNP [dm6]	A	C	2.524e^-5	0.777	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9198674	3L_9198674_SNP [dm3] 3L_9205574_SNP [dm6]	T	C	2.527e^-5	0.777	INTRON Slc45-1	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
3R	21657604	3R_21657604_SNP [dm3] 3R_25831882_SNP [dm6]	C	T	2.532e^-5	0.777	UTR_5_PRIME Mst57Da UPSTREAM Mst57Db & 1 other
3R	17569064	3R_17569064_SNP [dm3] 3R_21743342_SNP [dm6]	A	G	2.537e^-5	0.777	SYNONYMOUS_CODING CG5849 UTR_3_PRIME CG5849	TF binding site mE1_TFBS_sens
2L	6380568	2L_6380568_SNP [dm3] 2L_6380568_SNP [dm6]	A	G	2.556e^-5	0.777	UPSTREAM CG9507 INTRON CG42368
3R	6953259	3R_6953259_SNP [dm3] 3R_11127537_SNP [dm6]	A	T	2.597e^-5	0.777	NON_SYNONYMOUS_CODING Ugt86Dd
X	17178997	X_17178997_SNP [dm3] X_17284964_SNP [dm6]	A	T	2.653e^-5	0.777	UPSTREAM CG8661 DOWNSTREAM Fim INTRON CG5445
3L	3943048	3L_3943048_SNP [dm3] 3L_3943048_SNP [dm6]	T	G	2.683e^-5	0.777	UTR_5_PRIME CG14982 UPSTREAM CG10863
2L	14094539	2L_14094539_SNP [dm3] 2L_14094539_SNP [dm6]	G	C	2.694e^-5	0.777	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	16010255	X_16010255_SNP [dm3] X_16116222_SNP [dm6]	C	T	2.736e^-5	0.777	INTERGENIC	transposable element FlyBase
2L	9593563	2L_9593563_SNP [dm3] 2L_9593563_SNP [dm6]	G	A	2.759e^-5	0.777	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	6376315	2L_6376315_SNP [dm3] 2L_6376315_SNP [dm6]	T	C	2.825e^-5	0.777	SYNONYMOUS_CODING slam	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	14095609	2L_14095609_SNP [dm3] 2L_14095609_SNP [dm6]	G	T	2.843e^-5	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9443770	3R_9443770_SNP [dm3] 3R_13618048_SNP [dm6]	T	A	2.889e^-5	0.777	EXON CR45680
2R	15974386	2R_15974386_SNP [dm3] 2R_20086881_SNP [dm6]	G	A	2.896e^-5	0.777	DOWNSTREAM CR44632 INTERGENIC
X	17179004	X_17179004_SNP [dm3] X_17284971_SNP [dm6]	C	G	2.944e^-5	0.777	UPSTREAM CG8661 DOWNSTREAM Fim INTRON CG5445	insulator Insulator_Class_II.mE01
3L	3430805	3L_3430805_DEL [dm3] 3L_3430805_DEL [dm6]	CTTT	C	3.036e^-5	0.777	INTRON eIF5B
3R	4514168	3R_4514168_SNP [dm3] 3R_8688446_SNP [dm6]	C	G	3.089e^-5	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6873922	3L_6873922_SNP [dm3] 3L_6880822_SNP [dm6]	A	T	3.095e^-5	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6380597	2L_6380597_SNP [dm3] 2L_6380597_SNP [dm6]	A	G	3.104e^-5	0.777	UPSTREAM CG9507 INTRON CG42368
2L	7244598	2L_7244598_SNP [dm3] 2L_7244598_SNP [dm6]	A	G	3.132e^-5	0.777	INTRON Ndae1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	8980298	3R_8980298_SNP [dm3] 3R_13154576_SNP [dm6]	C	A	3.146e^-5	0.777	UTR_5_PRIME 2mit INTRON timeout EXON CR45109
2L	6394739	2L_6394739_SNP [dm3] 2L_6394739_SNP [dm6]	C	G	3.214e^-5	0.777	INTRON CG42368
2L	14330384	2L_14330384_SNP [dm3] 2L_14330384_SNP [dm6]	C	T	3.219e^-5	0.777	SYNONYMOUS_CODING ms_2_34Fe	TF binding site mE1_TFBS_cad
X	4706894	X_4706894_SNP [dm3] X_4812861_SNP [dm6]	G	A	3.249e^-5	0.777	INTERGENIC
2R	18674333	2R_18674333_SNP [dm3] 2R_22786828_SNP [dm6]	C	T	3.307e^-5	0.777	INTRON CG42260
2R	7843258	2R_7843258_SNP [dm3] 2R_11955753_SNP [dm6]	T	G	3.346e^-5	0.777	INTRON CG13188
2L	22321657	2L_22321657_SNP [dm3] 2L_22321657_SNP [dm6]	G	A	3.374e^-5	0.777	INTRON CG17018	transposable element FlyBase
3L	22510796	3L_22510796_SNP [dm3] 3L_22517696_SNP [dm6]	C	T	3.458e^-5	0.777	DOWNSTREAM mir-957 INTERGENIC
3R	18075673	3R_18075673_SNP [dm3] 3R_22249951_SNP [dm6]	T	C	3.465e^-5	0.777	INTRON SKIP
2L	9719424	2L_9719424_SNP [dm3] 2L_9719424_SNP [dm6]	T	A	3.480e^-5	0.777	INTRON Nckx30C
3R	9443875	3R_9443875_SNP [dm3] 3R_13618153_SNP [dm6]	T	A	3.608e^-5	0.792	EXON CR45680
2R	12783740	2R_12783740_SNP [dm3] 2R_16896235_SNP [dm6]	C	T	3.666e^-5	0.792	UPSTREAM mir-990 & 1 other INTERGENIC
2L	14094632	2L_14094632_SNP [dm3] 2L_14094632_SNP [dm6]	G	A	3.706e^-5	0.792	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	2069817	X_2069817_SNP [dm3] X_2175784_SNP [dm6]	A	T	3.829e^-5	0.792	UPSTREAM Cyp4d2 & 1 other DOWNSTREAM CR44690 EXON CR45479
2L	7338374	2L_7338374_SNP [dm3] 2L_7338374_SNP [dm6]	C	G	3.840e^-5	0.792	INTRON Wnt6
2L	14094525	2L_14094525_SNP [dm3] 2L_14094525_SNP [dm6]	T	G	3.910e^-5	0.792	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	7341309	2L_7341309_SNP [dm3] 2L_7341309_SNP [dm6]	T	A	3.916e^-5	0.792	INTRON Wnt6	TF binding site mE1_TFBS_sbb
2L	6373216	2L_6373216_SNP [dm3] 2L_6373216_SNP [dm6]	G	T	3.998e^-5	0.792	UPSTREAM slam INTRON slam	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2086116	X_2086116_SNP [dm3] X_2192083_SNP [dm6]	A	C	4.016e^-5	0.792	UTR_3_PRIME CG14053 INTRON Mct1	TF binding site mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
2L	22436687	2L_22436687_SNP [dm3] 2L_22543955_SNP [dm6]	A	T	4.016e^-5	0.792	INTRON CG17490
2L	18142071	2L_18142071_SNP [dm3] 2L_18142071_SNP [dm6]	C	G	4.108e^-5	0.792	NON_SYNONYMOUS_CODING Socs36E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16010249	X_16010249_SNP [dm3] X_16116216_SNP [dm6]	T	G	4.180e^-5	0.792	INTERGENIC
2R	18374248	2R_18374248_SNP [dm3] 2R_22486743_SNP [dm6]	C	T	4.241e^-5	0.792	NON_SYNONYMOUS_CODING CG4554
3R	21656748	3R_21656748_SNP [dm3] 3R_25831026_SNP [dm6]	G	A	4.273e^-5	0.792	UPSTREAM Sfp96F & 1 other DOWNSTREAM Mst57Da INTERGENIC	regulatory region REDfly_CRMs
2L	22341251	2L_22341251_SNP [dm3] 2L_22341251_SNP [dm6]	A	T	4.327e^-5	0.792	INTRON CG17018 EXON CR43359
3R	22159218	3R_22159218_SNP [dm3] 3R_26333496_SNP [dm6]	A	G	4.469e^-5	0.792	INTRON CG33970
3L	4880569	3L_4880569_SNP [dm3] 3L_4880569_SNP [dm6]	G	A	4.489e^-5	0.792	INTRON CG17150
3R	21223741	3R_21223741_SNP [dm3] 3R_25398019_SNP [dm6]	G	A	4.577e^-5	0.792	SYNONYMOUS_CODING Muc96D INTRON Fur1
X	1615781	X_1615781_SNP [dm3] X_1721748_SNP [dm6]	C	T	4.616e^-5	0.792	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	7510141	2R_7510141_SNP [dm3] 2R_11622636_SNP [dm6]	G	A	4.626e^-5	0.792	SYNONYMOUS_CODING CG9005	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	10170579	2L_10170579_SNP [dm3] 2L_10170579_SNP [dm6]	A	C	4.633e^-5	0.792	INTRON CG44153
3L	1002532	3L_1002532_SNP [dm3] 3L_1002532_SNP [dm6]	C	A	4.671e^-5	0.792	INTRON trio
2R	3226213	2R_3226213_SNP [dm3] 2R_7338708_SNP [dm6]	G	C	4.747e^-5	0.792	SYNONYMOUS_CODING Dscam1 INTRON Dscam1
3R	6953412	3R_6953412_SNP [dm3] 3R_11127690_SNP [dm6]	G	C	4.861e^-5	0.792	NON_SYNONYMOUS_CODING Ugt86Dd
X	18438146	X_18438146_SNP [dm3] X_18544113_SNP [dm6]	T	G	4.890e^-5	0.792	INTRON Bx
3R	22777956	3R_22777956_SNP [dm3] 3R_26952234_SNP [dm6]	A	G	4.941e^-5	0.792	INTRON CG6330	TF binding site BDTNP1_TFBS_da
3R	22777960	3R_22777960_SNP [dm3] 3R_26952238_SNP [dm6]	C	G	4.941e^-5	0.792	INTRON CG6330	TF binding site BDTNP1_TFBS_da
2R	13446138	2R_13446138_SNP [dm3] 2R_17558633_SNP [dm6]	C	G	4.953e^-5	0.792	INTRON Klp54D
2L	15103038	2L_15103038_SNP [dm3] 2L_15103038_SNP [dm6]	A	T	5.011e^-5	0.792	INTERGENIC
2L	11676226	2L_11676226_SNP [dm3] 2L_11676226_SNP [dm6]	C	A	5.011e^-5	0.792	INTERGENIC
3L	9100635	3L_9100635_SNP [dm3] 3L_9107535_SNP [dm6]	A	T	5.047e^-5	0.792	INTRON bol
3R	2470880	3R_2470880_SNP [dm3] 3R_6645158_SNP [dm6]	A	G	5.244e^-5	0.792	UPSTREAM CG1315 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9594278	2L_9594278_SNP [dm3] 2L_9594278_SNP [dm6]	T	C	5.260e^-5	0.792	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9530065	3R_9530065_SNP [dm3] 3R_13704343_SNP [dm6]	T	C	5.298e^-5	0.792	SYNONYMOUS_CODING Adgf-D	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14094524	2L_14094524_SNP [dm3] 2L_14094524_SNP [dm6]	A	C	5.336e^-5	0.792	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	5873021	2L_5873021_SNP [dm3] 2L_5873021_SNP [dm6]	A	T	5.364e^-5	0.792	INTRON rau
3R	21691431	3R_21691431_SNP [dm3] 3R_25865709_SNP [dm6]	G	T	5.382e^-5	0.792	INTRON CG5890
3R	14460161	3R_14460161_SNP [dm3] 3R_18634439_SNP [dm6]	G	T	5.422e^-5	0.792	INTRON qin & 1 other
3R	14235040	3R_14235040_SNP [dm3] 3R_18409318_SNP [dm6]	C	T	5.451e^-5	0.792	DOWNSTREAM CG10864 INTRON CG31122
3R	6953253	3R_6953253_SNP [dm3] 3R_11127531_SNP [dm6]	C	A	5.461e^-5	0.792	NON_SYNONYMOUS_CODING Ugt86Dd
3R	20612239	3R_20612239_SNP [dm3] 3R_24786517_SNP [dm6]	C	T	5.480e^-5	0.792	SYNONYMOUS_CODING CG5805	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16979219	X_16979219_SNP [dm3] X_17085186_SNP [dm6]	G	A	5.531e^-5	0.792	SYNONYMOUS_CODING CG8945
2L	6174613	2L_6174613_SNP [dm3] 2L_6174613_SNP [dm6]	A	G	5.555e^-5	0.792	INTERGENIC
3L	2527823	3L_2527823_SNP [dm3] 3L_2527823_SNP [dm6]	G	A	5.589e^-5	0.792	UPSTREAM CG32295 INTRON Spn
3L	3912095	3L_3912095_SNP [dm3] 3L_3912095_SNP [dm6]	A	G	5.653e^-5	0.792	INTRON Eip63F-1
2R	1348846	2R_1348846_SNP [dm3] 2R_5461341_SNP [dm6]	A	T	5.715e^-5	0.792	INTERGENIC
3L	6875394	3L_6875394_SNP [dm3] 3L_6882294_SNP [dm6]	G	A	5.741e^-5	0.792	INTERGENIC
3R	6996105	3R_6996105_SNP [dm3] 3R_11170383_SNP [dm6]	C	A	5.743e^-5	0.792	UPSTREAM Ugt35b DOWNSTREAM Ugt35a INTERGENIC
3L	23429620	3L_23429620_SNP [dm3] 3L_23436520_SNP [dm6]	G	C	5.758e^-5	0.792	INTERGENIC
2L	11703508	2L_11703508_SNP [dm3] 2L_11703508_SNP [dm6]	G	A	5.825e^-5	0.792	INTERGENIC
2R	13430172	2R_13430172_SNP [dm3] 2R_17542667_SNP [dm6]	G	A	5.912e^-5	0.792	SYNONYMOUS_CODING CG43370	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	14655370	2R_14655370_SNP [dm3] 2R_18767865_SNP [dm6]	T	C	5.932e^-5	0.792	INTRON Mctp
3R	8926369	3R_8926369_SNP [dm3] 3R_13100647_SNP [dm6]	C	G	5.965e^-5	0.792	INTRON timeout
3L	6874043	3L_6874043_SNP [dm3] 3L_6880943_SNP [dm6]	T	A	5.968e^-5	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6290842	2R_6290842_SNP [dm3] 2R_10403337_SNP [dm6]	C	T	6.048e^-5	0.792	INTRON CG42732
2L	2764032	2L_2764032_SNP [dm3] 2L_2764032_SNP [dm6]	A	C	6.149e^-5	0.792	UTR_3_PRIME CG3077 DOWNSTREAM CG3077 & 1 other
2L	22896556	2L_22896556_SNP [dm3] 2L_23003824_SNP [dm6]	G	A	6.152e^-5	0.792	SYNONYMOUS_CODING Cht3
2L	14014336	2L_14014336_SNP [dm3] 2L_14014336_SNP [dm6]	C	A	6.287e^-5	0.792	INTRON bgm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	7341280	2L_7341280_SNP [dm3] 2L_7341280_SNP [dm6]	T	C	6.291e^-5	0.792	INTRON Wnt6	TF binding site mE1_TFBS_sbb
3L	22533946	3L_22533946_SNP [dm3] 3L_22540846_SNP [dm6]	G	T	6.305e^-5	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18264198	3R_18264198_SNP [dm3] 3R_22438476_SNP [dm6]	A	G	6.322e^-5	0.792	INTERGENIC
2L	14094538	2L_14094538_SNP [dm3] 2L_14094538_SNP [dm6]	A	C	6.349e^-5	0.792	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	14094512	2L_14094512_SNP [dm3] 2L_14094512_SNP [dm6]	G	A	6.350e^-5	0.792	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	14655334	2R_14655334_SNP [dm3] 2R_18767829_SNP [dm6]	T	C	6.456e^-5	0.792	INTRON Mctp
3R	16498262	3R_16498262_SNP [dm3] 3R_20672540_SNP [dm6]	C	T	6.460e^-5	0.792	UTR_3_PRIME Cpr92F
2R	18240210	2R_18240210_SNP [dm3] 2R_22352705_SNP [dm6]	G	A	6.461e^-5	0.792	INTRON Liprin-gamma
2L	14094711	2L_14094711_SNP [dm3] 2L_14094711_SNP [dm6]	A	G	6.467e^-5	0.792	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	9344914	2R_9344914_SNP [dm3] 2R_13457409_SNP [dm6]	T	C	6.509e^-5	0.792	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2764202	2L_2764202_SNP [dm3] 2L_2764202_SNP [dm6]	A	C	6.611e^-5	0.792	UTR_3_PRIME CG3077 DOWNSTREAM Trn-SR
3R	20976837	3R_20976837_SNP [dm3] 3R_25151115_SNP [dm6]	C	T	6.764e^-5	0.792	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22530724	3L_22530724_SNP [dm3] 3L_22537624_SNP [dm6]	C	A	6.771e^-5	0.792	INTERGENIC
2L	22312106	2L_22312106_SNP [dm3] 2L_22312106_SNP [dm6]	C	T	6.862e^-5	0.792	INTRON CG17018
2L	2763913	2L_2763913_SNP [dm3] 2L_2763913_SNP [dm6]	T	A	6.921e^-5	0.792	UTR_3_PRIME CG3077 DOWNSTREAM CG3077 & 1 other
3R	5907868	3R_5907868_SNP [dm3] 3R_10082146_SNP [dm6]	G	A	7.073e^-5	0.792	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	22452535	2L_22452535_SNP [dm3] 2L_22559803_SNP [dm6]	C	T	7.128e^-5	0.792	INTERGENIC
X	2084871	X_2084871_SNP [dm3] X_2190838_SNP [dm6]	T	A	7.145e^-5	0.792	DOWNSTREAM CG14053 INTRON Mct1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2292962	X_2292962_SNP [dm3] X_2398929_SNP [dm6]	A	G	7.162e^-5	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	14094572	2L_14094572_SNP [dm3] 2L_14094572_SNP [dm6]	T	C	7.303e^-5	0.792	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	9260572	3R_9260572_SNP [dm3] 3R_13434850_SNP [dm6]	G	A	7.335e^-5	0.792	START_GAINED yrt UTR_5_PRIME yrt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	2763711	2L_2763711_SNP [dm3] 2L_2763711_SNP [dm6]	G	T	7.429e^-5	0.792	UTR_3_PRIME Trn-SR & 1 other DOWNSTREAM CG3077 & 1 other
2L	17391650	2L_17391650_SNP [dm3] 2L_17391650_SNP [dm6]	A	T	7.490e^-5	0.792	INTRON CLIP-190
2L	14095103	2L_14095103_SNP [dm3] 2L_14095103_SNP [dm6]	T	A	7.491e^-5	0.792	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	6048217	2L_6048217_SNP [dm3] 2L_6048217_SNP [dm6]	C	A	7.530e^-5	0.792	NON_SYNONYMOUS_CODING CG34179 UTR_5_PRIME slmo & 1 other UPSTREAM CG12393 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	7391959	2R_7391959_SNP [dm3] 2R_11504454_SNP [dm6]	T	A	7.532e^-5	0.792	INTRON inv
3R	7000716	3R_7000716_SNP [dm3] 3R_11174994_SNP [dm6]	C	A	7.560e^-5	0.792	UPSTREAM Ugt86Dh INTRON Ugt86Dj
2R	13433050	2R_13433050_SNP [dm3] 2R_17545545_SNP [dm6]	T	C	7.561e^-5	0.792	DOWNSTREAM CG34194 & 1 other INTRON cyp33	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	14381958	X_14381958_SNP [dm3] X_14487925_SNP [dm6]	A	T	7.575e^-5	0.792	INTERGENIC
2L	12088176	2L_12088176_DEL [dm3] 2L_12088176_DEL [dm6]	GCTGT	CAAA	7.583e^-5	0.792	DOWNSTREAM CR44593 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14094674	2L_14094674_SNP [dm3] 2L_14094674_SNP [dm6]	A	G	7.601e^-5	0.792	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	14237382	3R_14237382_SNP [dm3] 3R_18411660_SNP [dm6]	A	C	7.711e^-5	0.792	UPSTREAM CG10864 INTRON CG31122	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	8071277	3R_8071277_SNP [dm3] 3R_12245555_SNP [dm6]	A	G	7.712e^-5	0.792	DOWNSTREAM CR45582 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	14460275	3R_14460275_SNP [dm3] 3R_18634553_SNP [dm6]	T	A	7.827e^-5	0.792	INTRON qin & 1 other
2L	5903983	2L_5903983_SNP [dm3] 2L_5903983_SNP [dm6]	A	G	7.912e^-5	0.792	SYNONYMOUS_CODING CG9021 DOWNSTREAM CR43808	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18979572	3R_18979572_SNP [dm3] 3R_23153850_SNP [dm6]	C	T	7.914e^-5	0.792	UTR_3_PRIME unk
X	2071937	X_2071937_SNP [dm3] X_2177904_SNP [dm6]	C	G	7.993e^-5	0.792	SYNONYMOUS_CODING Cyp4d2 EXON CR44690	TF binding site mE1_TFBS_inv
3R	8519144	3R_8519144_SNP [dm3] 3R_12693422_SNP [dm6]	C	A	8.034e^-5	0.792	SYNONYMOUS_CODING Arp1 UPSTREAM CG31347 DOWNSTREAM CG14391	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15340472	3R_15340472_SNP [dm3] 3R_19514750_SNP [dm6]	G	T	8.068e^-5	0.792	INTRON Dys
3L	7714894	3L_7714894_SNP [dm3] 3L_7721794_SNP [dm6]	C	A	8.075e^-5	0.792	DOWNSTREAM CG7457 & 1 other INTRON CG32373
3L	9100618	3L_9100618_SNP [dm3] 3L_9107518_SNP [dm6]	A	T	8.076e^-5	0.792	INTRON bol
3L	4951792	3L_4951792_SNP [dm3] 3L_4951792_SNP [dm6]	A	G	8.083e^-5	0.792	INTRON Con
2L	7244005	2L_7244005_SNP [dm3] 2L_7244005_SNP [dm6]	A	C	8.116e^-5	0.792	INTRON Ndae1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3551952	2L_3551952_SNP [dm3] 2L_3551952_SNP [dm6]	A	T	8.179e^-5	0.792	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14101093	2L_14101093_SNP [dm3] 2L_14101093_SNP [dm6]	G	C	8.296e^-5	0.792	INTERGENIC
3L	14935170	3L_14935170_SNP [dm3] 3L_14942070_SNP [dm6]	G	A	8.304e^-5	0.792	SYNONYMOUS_CODING DCX-EMAP	TF binding site mE1_TFBS_chinmo
2L	14094598	2L_14094598_SNP [dm3] 2L_14094598_SNP [dm6]	T	C	8.304e^-5	0.792	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	21036549	3R_21036549_SNP [dm3] 3R_25210827_SNP [dm6]	G	A	8.347e^-5	0.792	INTRON CG13654
3R	21036561	3R_21036561_SNP [dm3] 3R_25210839_SNP [dm6]	A	C	8.347e^-5	0.792	INTRON CG13654
3L	8573283	3L_8573283_SNP [dm3] 3L_8580183_SNP [dm6]	A	C	8.351e^-5	0.792	INTRON CG43078
2L	14094527	2L_14094527_SNP [dm3] 2L_14094527_SNP [dm6]	T	A	8.375e^-5	0.792	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	12458552	2R_12458552_SNP [dm3] 2R_16571047_SNP [dm6]	C	T	8.390e^-5	0.792	UTR_5_PRIME RpS15 DOWNSTREAM CG4945 INTRON RpS15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	4563499	X_4563499_SNP [dm3] X_4669466_SNP [dm6]	A	G	8.436e^-5	0.792	INTRON rap	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8003550	3L_8003550_SNP [dm3] 3L_8010450_SNP [dm6]	T	A	8.497e^-5	0.792	INTRON nmo
3R	14460276	3R_14460276_SNP [dm3] 3R_18634554_SNP [dm6]	C	A	8.501e^-5	0.792	INTRON qin & 1 other
3L	2016010	3L_2016010_SNP [dm3] 3L_2016010_SNP [dm6]	G	A	8.501e^-5	0.792	INTERGENIC
2L	18178712	2L_18178712_SNP [dm3] 2L_18178712_SNP [dm6]	A	C	8.563e^-5	0.792	INTRON CG42750
3R	5852352	3R_5852352_SNP [dm3] 3R_10026630_SNP [dm6]	T	A	8.566e^-5	0.792	INTRON Mical
2L	14094841	2L_14094841_SNP [dm3] 2L_14094841_SNP [dm6]	C	T	8.582e^-5	0.792	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	14097588	2L_14097588_SNP [dm3] 2L_14097588_SNP [dm6]	A	T	8.617e^-5	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25839325	3R_25839325_SNP [dm3] 3R_30013603_SNP [dm6]	G	T	8.638e^-5	0.792	INTRON CG7920
3L	18139134	3L_18139134_SNP [dm3] 3L_18146034_SNP [dm6]	T	A	8.644e^-5	0.792	DOWNSTREAM gk INTERGENIC
3L	22532407	3L_22532407_SNP [dm3] 3L_22539307_SNP [dm6]	A	T	8.762e^-5	0.792	INTERGENIC
3R	19000455	3R_19000455_SNP [dm3] 3R_23174733_SNP [dm6]	T	A	8.780e^-5	0.792	UTR_5_PRIME Irk1 INTRON Irk1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15363285	3R_15363285_SNP [dm3] 3R_19537563_SNP [dm6]	C	G	8.816e^-5	0.792	INTRON Dys
2L	14366899	2L_14366899_SNP [dm3] 2L_14366899_SNP [dm6]	T	C	8.837e^-5	0.792	DOWNSTREAM spel1 INTERGENIC
2L	14094594	2L_14094594_SNP [dm3] 2L_14094594_SNP [dm6]	G	A	8.895e^-5	0.792	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	9100627	3L_9100627_SNP [dm3] 3L_9107527_SNP [dm6]	T	G	8.903e^-5	0.792	INTRON bol
3L	18139145	3L_18139145_SNP [dm3] 3L_18146045_SNP [dm6]	G	A	9.022e^-5	0.792	DOWNSTREAM gk INTERGENIC
3R	21657851	3R_21657851_SNP [dm3] 3R_25832129_SNP [dm6]	C	T	9.079e^-5	0.792	UPSTREAM alpha4GT2 & 1 other INTERGENIC
2L	11705063	2L_11705063_SNP [dm3] 2L_11705063_SNP [dm6]	T	A	9.167e^-5	0.792	INTERGENIC
2L	21187664	2L_21187664_SNP [dm3] 2L_21187664_SNP [dm6]	G	A	9.175e^-5	0.792	INTRON Ret
2L	9594467	2L_9594467_SNP [dm3] 2L_9594467_SNP [dm6]	G	A	9.310e^-5	0.792	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18177768	2L_18177768_SNP [dm3] 2L_18177768_SNP [dm6]	A	G	9.419e^-5	0.792	INTRON CG42750
2L	9593939	2L_9593939_SNP [dm3] 2L_9593939_SNP [dm6]	A	G	9.429e^-5	0.792	INTERGENIC	regulatory region REDfly_CRMs
2L	9971988	2L_9971988_SNP [dm3] 2L_9971988_SNP [dm6]	G	C	9.452e^-5	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	13446142	2R_13446142_SNP [dm3] 2R_17558637_SNP [dm6]	A	C	9.473e^-5	0.792	INTRON Klp54D
3R	1586675	3R_1586675_SNP [dm3] 3R_5760953_SNP [dm6]	C	T	9.616e^-5	0.792	SYNONYMOUS_CODING CG2082 DOWNSTREAM CG2082
2L	10830776	2L_10830776_SNP [dm3] 2L_10830776_SNP [dm6]	T	C	9.632e^-5	0.792	INTRON Nos
2R	18394279	2R_18394279_SNP [dm3] 2R_22506774_SNP [dm6]	A	T	9.659e^-5	0.792	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
2R	11662923	2R_11662923_SNP [dm3] 2R_15775418_SNP [dm6]	G	A	9.673e^-5	0.792	SYNONYMOUS_CODING Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4544731	3R_4544731_SNP [dm3] 3R_8719009_SNP [dm6]	G	A	9.722e^-5	0.792	UPSTREAM CG11760 & 1 other INTRON CG8116
3L	9414752	3L_9414752_SNP [dm3] 3L_9421652_SNP [dm6]	G	T	9.730e^-5	0.792	INTRON CG3967	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	14236652	3R_14236652_SNP [dm3] 3R_18410930_SNP [dm6]	T	C	9.734e^-5	0.792	SYNONYMOUS_CODING CG10864 INTRON CG31122	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14655283	2R_14655283_SNP [dm3] 2R_18767778_SNP [dm6]	A	T	9.897e^-5	0.792	INTRON Mctp
X	3327695	X_3327695_SNP [dm3] X_3433662_SNP [dm6]	T	C	9.935e^-5	0.792	INTRON CR44999 & 1 other
3R	16500179	3R_16500179_SNP [dm3] 3R_20674457_SNP [dm6]	A	G	9.936e^-5	0.792	INTERGENIC
3R	26058359	3R_26058359_SNP [dm3] 3R_30232637_SNP [dm6]	A	G	9.962e^-5	0.792	INTERGENIC
3L	5095198	3L_5095198_SNP [dm3] 3L_5095198_SNP [dm6]	C	A	9.984e^-5	0.792	INTERGENIC
2L	5509295	2L_5509295_SNP [dm3] 2L_5509295_SNP [dm6]	T	A	1.002e^-4	0.792	INTERGENIC
3L	11135325	3L_11135325_DEL [dm3] 3L_11142225_DEL [dm6]	TTT	T	1.019e^-4	0.792	INTRON CG32082
3R	8926402	3R_8926402_SNP [dm3] 3R_13100680_SNP [dm6]	G	A	1.027e^-4	0.792	INTRON timeout
2R	15974281	2R_15974281_SNP [dm3] 2R_20086776_SNP [dm6]	C	G	1.028e^-4	0.792	DOWNSTREAM CR44632 INTERGENIC
2L	2762366	2L_2762366_SNP [dm3] 2L_2762366_SNP [dm6]	C	T	1.030e^-4	0.792	SYNONYMOUS_CODING Trn-SR	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15974375	2R_15974375_SNP [dm3] 2R_20086870_SNP [dm6]	C	T	1.041e^-4	0.792	DOWNSTREAM CR44632 INTERGENIC
3L	10209504	3L_10209504_SNP [dm3] 3L_10216404_SNP [dm6]	C	T	1.050e^-4	0.792	SYNONYMOUS_CODING CG8065
X	6874714	X_6874714_SNP [dm3] X_6980681_SNP [dm6]	A	G	1.058e^-4	0.792	INTRON ogre	TF binding site mE1_TFBS_sens
3R	1583916	3R_1583916_SNP [dm3] 3R_5758194_SNP [dm6]	A	G	1.069e^-4	0.792	NON_SYNONYMOUS_CODING Sec8 DOWNSTREAM CG2082	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	7000748	3R_7000748_SNP [dm3] 3R_11175026_SNP [dm6]	A	T	1.070e^-4	0.792	UPSTREAM Ugt86Dh INTRON Ugt86Dj
2L	14095017	2L_14095017_SNP [dm3] 2L_14095017_SNP [dm6]	G	A	1.072e^-4	0.792	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	14095029	2L_14095029_SNP [dm3] 2L_14095029_SNP [dm6]	A	G	1.072e^-4	0.792	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	3599530	3L_3599530_SNP [dm3] 3L_3599530_SNP [dm6]	A	G	1.078e^-4	0.792	INTRON Eip63E
3R	4522635	3R_4522635_SNP [dm3] 3R_8696913_SNP [dm6]	G	C	1.083e^-4	0.792	INTRON hb	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_Trl
X	6874707	X_6874707_DEL [dm3] X_6980674_DEL [dm6]	CC	C	1.085e^-4	0.792	INTRON ogre	TF binding site mE1_TFBS_sens
2L	7151942	2L_7151942_SNP [dm3] 2L_7151942_SNP [dm6]	T	G	1.086e^-4	0.792	INTRON Pvf3
2R	4438434	2R_4438434_SNP [dm3] 2R_8550929_SNP [dm6]	T	A	1.086e^-4	0.792	DOWNSTREAM CG12780 INTERGENIC
X	16979198	X_16979198_SNP [dm3] X_17085165_SNP [dm6]	A	G	1.086e^-4	0.792	SYNONYMOUS_CODING CG8945
2L	22351352	2L_22351352_SNP [dm3] 2L_22351352_SNP [dm6]	T	C	1.086e^-4	0.792	INTRON CG17018	transposable element FlyBase
X	17179015	X_17179015_SNP [dm3] X_17284982_SNP [dm6]	T	A	1.089e^-4	0.792	UPSTREAM CG8661 DOWNSTREAM Fim INTRON CG5445
2L	14094518	2L_14094518_SNP [dm3] 2L_14094518_SNP [dm6]	G	A	1.090e^-4	0.792	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	13953028	2L_13953028_SNP [dm3] 2L_13953028_SNP [dm6]	G	C	1.093e^-4	0.792	INTRON Ance-3
2R	13390649	2R_13390649_SNP [dm3] 2R_17503144_SNP [dm6]	A	G	1.095e^-4	0.792	INTRON CG43164	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7774699	2L_7774699_SNP [dm3] 2L_7774699_SNP [dm6]	C	G	1.097e^-4	0.792	UTR_3_PRIME CG7191
2R	9331940	2R_9331940_SNP [dm3] 2R_13444435_SNP [dm6]	G	A	1.098e^-4	0.792	NON_SYNONYMOUS_CODING cnn
3L	2354396	3L_2354396_SNP [dm3] 3L_2354396_SNP [dm6]	C	A	1.099e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_inv
3R	8925994	3R_8925994_SNP [dm3] 3R_13100272_SNP [dm6]	C	T	1.111e^-4	0.792	INTRON timeout	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21888950	3R_21888950_SNP [dm3] 3R_26063228_SNP [dm6]	C	T	1.111e^-4	0.792	UPSTREAM CG14551 INTERGENIC
2R	19261821	2R_19261821_SNP [dm3] 2R_23374298_SNP [dm6]	T	A	1.115e^-4	0.792	SYNONYMOUS_CODING Golgin245	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13952821	2L_13952821_SNP [dm3] 2L_13952821_SNP [dm6]	T	G	1.115e^-4	0.792	INTRON Ance-3
2L	8653407	2L_8653407_SNP [dm3] 2L_8653407_SNP [dm6]	A	G	1.122e^-4	0.792	INTRON Sema-1a
3R	14235297	3R_14235297_SNP [dm3] 3R_18409575_SNP [dm6]	C	T	1.134e^-4	0.792	SYNONYMOUS_CODING CG31122 DOWNSTREAM CG10864	TF binding site mE1_TFBS_chinmo
3L	6873895	3L_6873895_SNP [dm3] 3L_6880795_SNP [dm6]	A	G	1.154e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2761388	2L_2761388_SNP [dm3] 2L_2761388_SNP [dm6]	G	A	1.156e^-4	0.792	INTRON Trn-SR	TF binding site mE1_TFBS_cad
3L	10462850	3L_10462850_SNP [dm3] 3L_10469750_SNP [dm6]	T	A	1.156e^-4	0.792	DOWNSTREAM S-Lap3 INTERGENIC
2L	14094569	2L_14094569_SNP [dm3] 2L_14094569_SNP [dm6]	G	C	1.159e^-4	0.792	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	14094586	2L_14094586_SNP [dm3] 2L_14094586_SNP [dm6]	G	A	1.159e^-4	0.792	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	15974332	2R_15974332_SNP [dm3] 2R_20086827_SNP [dm6]	G	T	1.163e^-4	0.792	DOWNSTREAM CR44632 INTERGENIC
2R	6595021	2R_6595021_SNP [dm3] 2R_10707516_SNP [dm6]	C	T	1.163e^-4	0.792	SYNONYMOUS_CODING stan	TF binding site mE1_TFBS_cad
2L	10039855	2L_10039855_SNP [dm3] 2L_10039855_SNP [dm6]	T	C	1.166e^-4	0.792	DOWNSTREAM obst-B INTERGENIC
3L	504792	3L_504792_SNP [dm3] 3L_504792_SNP [dm6]	T	C	1.168e^-4	0.792	INTRON klar
X	13122552	X_13122552_SNP [dm3] X_13228519_SNP [dm6]	C	T	1.171e^-4	0.792	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18139132	3L_18139132_SNP [dm3] 3L_18146032_SNP [dm6]	C	T	1.175e^-4	0.792	DOWNSTREAM gk INTERGENIC
3R	1589088	3R_1589088_SNP [dm3] 3R_5763366_SNP [dm6]	T	C	1.177e^-4	0.792	INTRON CG2082
3R	5847555	3R_5847555_SNP [dm3] 3R_10021833_SNP [dm6]	C	T	1.181e^-4	0.792	UTR_5_PRIME Mical UPSTREAM Mical INTRON Mical	TF binding site mE1_TFBS_inv
3R	8059206	3R_8059206_SNP [dm3] 3R_12233484_SNP [dm6]	A	G	1.185e^-4	0.792	SYNONYMOUS_CODING Cyp313a5 UPSTREAM Pglym87
X	17525365	X_17525365_SNP [dm3] X_17631332_SNP [dm6]	C	T	1.188e^-4	0.792	SYNONYMOUS_CODING CG8316 UPSTREAM CG5703
2R	15974284	2R_15974284_SNP [dm3] 2R_20086779_SNP [dm6]	C	T	1.190e^-4	0.792	DOWNSTREAM CR44632 INTERGENIC
3L	3771382	3L_3771382_SNP [dm3] 3L_3771382_SNP [dm6]	G	C	1.192e^-4	0.792	INTRON CG32264
2L	14094581	2L_14094581_SNP [dm3] 2L_14094581_SNP [dm6]	A	G	1.199e^-4	0.792	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	15886227	3L_15886227_SNP [dm3] 3L_15893127_SNP [dm6]	G	A	1.212e^-4	0.792	INTRON pHCl
3R	22159318	3R_22159318_SNP [dm3] 3R_26333596_SNP [dm6]	A	G	1.214e^-4	0.792	INTRON CG33970
2R	9675685	2R_9675685_SNP [dm3] 2R_13788180_SNP [dm6]	A	G	1.214e^-4	0.792	DOWNSTREAM Cpr50Ca INTERGENIC
2R	13287157	2R_13287157_SNP [dm3] 2R_17399652_SNP [dm6]	T	G	1.217e^-4	0.792	INTRON Sip1
3R	20614933	3R_20614933_SNP [dm3] 3R_24789211_SNP [dm6]	A	C	1.221e^-4	0.792	SYNONYMOUS_CODING CG13634 INTRON Ets96B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6995450	3R_6995450_SNP [dm3] 3R_11169728_SNP [dm6]	C	T	1.221e^-4	0.792	SYNONYMOUS_CODING Ugt35b
3L	6875530	3L_6875530_SNP [dm3] 3L_6882430_SNP [dm6]	A	C	1.221e^-4	0.792	DOWNSTREAM CR45416 INTERGENIC	TF binding site mE1_TFBS_cad
X	4914754	X_4914754_SNP [dm3] X_5020721_SNP [dm6]	C	T	1.229e^-4	0.792	INTRON CR44833	regulatory region REDfly_CRMs
3R	18075602	3R_18075602_SNP [dm3] 3R_22249880_SNP [dm6]	C	A	1.237e^-4	0.792	INTRON SKIP
2L	2763791	2L_2763791_SNP [dm3] 2L_2763791_SNP [dm6]	C	T	1.242e^-4	0.792	UTR_3_PRIME Trn-SR & 1 other DOWNSTREAM CG3077 & 1 other
2L	14094567	2L_14094567_SNP [dm3] 2L_14094567_SNP [dm6]	A	G	1.251e^-4	0.792	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	14095019	2L_14095019_SNP [dm3] 2L_14095019_SNP [dm6]	T	A	1.251e^-4	0.792	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	19905255	3R_19905255_SNP [dm3] 3R_24079533_SNP [dm6]	A	C	1.255e^-4	0.792	INTRON 4EHP
2L	2764027	2L_2764027_SNP [dm3] 2L_2764027_SNP [dm6]	A	T	1.258e^-4	0.792	UTR_3_PRIME CG3077 DOWNSTREAM CG3077 & 1 other
3R	18959444	3R_18959444_SNP [dm3] 3R_23133722_SNP [dm6]	A	G	1.275e^-4	0.792	INTRON hh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
3R	5847134	3R_5847134_SNP [dm3] 3R_10021412_SNP [dm6]	A	T	1.276e^-4	0.792	START_GAINED Mical UTR_5_PRIME Mical INTRON Mical	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9341063	2R_9341063_SNP [dm3] 2R_13453558_SNP [dm6]	T	C	1.279e^-4	0.792	DOWNSTREAM arr & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
3R	15029834	3R_15029834_SNP [dm3] 3R_19204112_SNP [dm6]	C	A	1.287e^-4	0.792	INTERGENIC
3L	22499989	3L_22499989_SNP [dm3] 3L_22506889_SNP [dm6]	A	G	1.291e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18911081	2L_18911081_SNP [dm3] 2L_18911081_SNP [dm6]	T	C	1.308e^-4	0.792	INTERGENIC
3L	12556452	3L_12556452_SNP [dm3] 3L_12563352_SNP [dm6]	T	C	1.309e^-4	0.792	INTRON sowah
2L	9854982	2L_9854982_SNP [dm3] 2L_9854982_SNP [dm6]	T	A	1.317e^-4	0.792	INTRON nAChRalpha6
3L	4877616	3L_4877616_SNP [dm3] 3L_4877616_SNP [dm6]	G	A	1.319e^-4	0.792	INTRON CG17150
2L	14094616	2L_14094616_SNP [dm3] 2L_14094616_SNP [dm6]	A	T	1.319e^-4	0.792	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	22348628	2L_22348628_SNP [dm3] 2L_22348628_SNP [dm6]	C	A	1.325e^-4	0.792	INTRON CG17018
2R	6595012	2R_6595012_SNP [dm3] 2R_10707507_SNP [dm6]	T	C	1.330e^-4	0.792	SYNONYMOUS_CODING stan	TF binding site mE1_TFBS_cad
2R	9344047	2R_9344047_SNP [dm3] 2R_13456542_SNP [dm6]	A	T	1.332e^-4	0.792	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_cad
3L	3511862	3L_3511862_SNP [dm3] 3L_3511862_SNP [dm6]	T	A	1.333e^-4	0.792	SYNONYMOUS_CODING ImpE2 DOWNSTREAM CG42324	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_cad mE1_TFBS_HSA
X	5921367	X_5921367_SNP [dm3] X_6027334_SNP [dm6]	T	G	1.333e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	20929108	3R_20929108_SNP [dm3] 3R_25103386_SNP [dm6]	T	A	1.335e^-4	0.792	NON_SYNONYMOUS_CODING CG45095 DOWNSTREAM CG34027
X	14909226	X_14909226_SNP [dm3] X_15015193_SNP [dm6]	C	T	1.353e^-4	0.792	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
2L	2249095	2L_2249095_SNP [dm3] 2L_2249095_SNP [dm6]	T	G	1.355e^-4	0.792	INTERGENIC
3R	5842615	3R_5842615_SNP [dm3] 3R_10016893_SNP [dm6]	T	C	1.372e^-4	0.792	INTRON Mical
3L	3943109	3L_3943109_SNP [dm3] 3L_3943109_SNP [dm6]	G	C	1.372e^-4	0.792	UTR_5_PRIME CG14982 UPSTREAM CG10863
X	4914301	X_4914301_SNP [dm3] X_5020268_SNP [dm6]	T	C	1.379e^-4	0.792	INTRON CR44833	regulatory region REDfly_CRMs
2R	13428674	2R_13428674_SNP [dm3] 2R_17541169_SNP [dm6]	C	T	1.380e^-4	0.792	NON_SYNONYMOUS_CODING CG43370	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12458905	2R_12458905_INS [dm3] 2R_16571400_INS [dm6]	A	AAAATAAGGCACGA...	1.386e^-4	0.792	UPSTREAM CG4927 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3R	15319382	3R_15319382_SNP [dm3] 3R_19493660_SNP [dm6]	G	C	1.387e^-4	0.792	INTRON Dys
3R	4844180	3R_4844180_INS [dm3] 3R_9018458_INS [dm6]	G	GCTGCTG	1.391e^-4	0.792	CODON_INSERTION tgo	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	16979231	X_16979231_SNP [dm3] X_17085198_SNP [dm6]	G	T	1.391e^-4	0.792	NON_SYNONYMOUS_CODING CG8945
2R	16454549	2R_16454549_SNP [dm3] 2R_20567044_SNP [dm6]	G	T	1.394e^-4	0.792	INTRON qsm
2L	9854984	2L_9854984_SNP [dm3] 2L_9854984_SNP [dm6]	A	T	1.396e^-4	0.792	INTRON nAChRalpha6
2L	14095031	2L_14095031_SNP [dm3] 2L_14095031_SNP [dm6]	C	T	1.409e^-4	0.792	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	12455327	3R_12455327_SNP [dm3] 3R_16629605_SNP [dm6]	A	T	1.412e^-4	0.792	SPLICE_SITE_REGION Fas1 INTRON Fas1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10582904	3L_10582904_SNP [dm3] 3L_10589804_SNP [dm6]	A	T	1.423e^-4	0.792	INTRON A2bp1
2L	14094582	2L_14094582_SNP [dm3] 2L_14094582_SNP [dm6]	T	G	1.432e^-4	0.792	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	7145774	2L_7145774_SNP [dm3] 2L_7145774_SNP [dm6]	C	A	1.433e^-4	0.792	DOWNSTREAM CR44612 INTRON Pvf3
2L	8373034	2L_8373034_SNP [dm3] 2L_8373034_SNP [dm6]	C	G	1.449e^-4	0.792	SYNONYMOUS_CODING CG17292	TF binding site mE1_TFBS_HSA
2L	6130273	2L_6130273_SNP [dm3] 2L_6130273_SNP [dm6]	A	G	1.451e^-4	0.792	SYNONYMOUS_CODING CG42730 UTR_5_PRIME tectonic UPSTREAM CG9222	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8458500	3L_8458500_SNP [dm3] 3L_8465400_SNP [dm6]	A	G	1.451e^-4	0.792	SYNONYMOUS_CODING Gug	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6166015	2L_6166015_SNP [dm3] 2L_6166015_SNP [dm6]	G	A	1.456e^-4	0.792	INTERGENIC
3R	22269439	3R_22269439_SNP [dm3] 3R_26443717_SNP [dm6]	T	A	1.456e^-4	0.792	INTRON tx
3R	21547693	3R_21547693_SNP [dm3] 3R_25721971_SNP [dm6]	A	G	1.461e^-4	0.792	INTRON LpR2
3L	4947200	3L_4947200_SNP [dm3] 3L_4947200_SNP [dm6]	A	T	1.466e^-4	0.792	INTRON Con
2L	6048227	2L_6048227_SNP [dm3] 2L_6048227_SNP [dm6]	T	C	1.466e^-4	0.792	SYNONYMOUS_CODING CG34179 UTR_5_PRIME slmo & 1 other UPSTREAM CG12393 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6100300	2L_6100300_SNP [dm3] 2L_6100300_SNP [dm6]	A	G	1.468e^-4	0.792	UPSTREAM stai INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4043138	2L_4043138_SNP [dm3] 2L_4043138_SNP [dm6]	T	A	1.472e^-4	0.792	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21371605	X_21371605_SNP [dm3] X_21500578_SNP [dm6]	T	G	1.474e^-4	0.792	INTRON CR45082
3R	4541786	3R_4541786_SNP [dm3] 3R_8716064_SNP [dm6]	A	T	1.485e^-4	0.792	UPSTREAM CG8116 & 1 other DOWNSTREAM CG8112 INTRON Cks85A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	17992878	3L_17992878_INS [dm3] 3L_17999778_INS [dm6]	T	TA	1.485e^-4	0.792	UTR_5_PRIME Eip75B INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3L	2016409	3L_2016409_SNP [dm3] 3L_2016409_SNP [dm6]	C	T	1.489e^-4	0.792	INTERGENIC
3R	4692029	3R_4692029_SNP [dm3] 3R_8866307_SNP [dm6]	T	C	1.498e^-4	0.792	INTRON pyd
3R	8917153	3R_8917153_SNP [dm3] 3R_13091431_SNP [dm6]	C	T	1.500e^-4	0.792	INTRON timeout
3R	8471644	3R_8471644_SNP [dm3] 3R_12645922_SNP [dm6]	A	G	1.502e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	13423097	2L_13423097_SNP [dm3] 2L_13423097_SNP [dm6]	A	G	1.511e^-4	0.792	START_GAINED CG42784 UTR_5_PRIME CG42784
3L	22217862	3L_22217862_INS [dm3] 3L_22224762_INS [dm6]	CC	ATATG	1.512e^-4	0.792	DOWNSTREAM CR45035 INTRON olf413	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14955036	3R_14955036_SNP [dm3] 3R_19129314_SNP [dm6]	G	A	1.512e^-4	0.792	SYNONYMOUS_CODING CG6040	TF binding site mE1_TFBS_chinmo
2R	7220740	2R_7220740_SNP [dm3] 2R_11333235_SNP [dm6]	C	T	1.514e^-4	0.792	SYNONYMOUS_CODING sha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13431820	2R_13431820_SNP [dm3] 2R_17544315_SNP [dm6]	A	T	1.515e^-4	0.792	UTR_5_PRIME CG34194 UTR_3_PRIME CG43370 UPSTREAM CG34194 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	13430604	2R_13430604_SNP [dm3] 2R_17543099_SNP [dm6]	C	A	1.516e^-4	0.792	INTRON CG43370	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17391368	2L_17391368_INS [dm3] 2L_17391368_INS [dm6]	A	AA	1.519e^-4	0.792	INTRON CLIP-190
2R	13447318	2R_13447318_SNP [dm3] 2R_17559813_SNP [dm6]	A	G	1.522e^-4	0.792	INTRON Klp54D
3L	2504606	3L_2504606_SNP [dm3] 3L_2504606_SNP [dm6]	T	A	1.523e^-4	0.792	UPSTREAM CG16758 DOWNSTREAM Spn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4222913	2L_4222913_SNP [dm3] 2L_4222913_SNP [dm6]	A	T	1.530e^-4	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	8930555	3R_8930555_SNP [dm3] 3R_13104833_SNP [dm6]	G	A	1.538e^-4	0.792	INTRON timeout
3R	20617371	3R_20617371_SNP [dm3] 3R_24791649_SNP [dm6]	G	C	1.542e^-4	0.792	UPSTREAM Ets96B INTRON Ets96B	TF binding site mE1_TFBS_chinmo
3L	10209516	3L_10209516_SNP [dm3] 3L_10216416_SNP [dm6]	A	G	1.555e^-4	0.792	SYNONYMOUS_CODING CG8065
2R	12458909	2R_12458909_INS [dm3] 2R_16571404_INS [dm6]	A	CAAGCTAATATCAAT...	1.555e^-4	0.792	UPSTREAM CG4927 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14955030	3R_14955030_SNP [dm3] 3R_19129308_SNP [dm6]	A	G	1.556e^-4	0.792	SYNONYMOUS_CODING CG6040	TF binding site mE1_TFBS_chinmo
2R	12112767	2R_12112767_SNP [dm3] 2R_16225262_SNP [dm6]	A	T	1.556e^-4	0.792	UTR_5_PRIME CG15706
2R	12112768	2R_12112768_SNP [dm3] 2R_16225263_SNP [dm6]	T	A	1.556e^-4	0.792	UTR_5_PRIME CG15706
2L	11676482	2L_11676482_SNP [dm3] 2L_11676482_SNP [dm6]	T	G	1.559e^-4	0.792	INTERGENIC
X	17179019	X_17179019_SNP [dm3] X_17284986_SNP [dm6]	G	C	1.563e^-4	0.792	UPSTREAM CG8661 DOWNSTREAM Fim INTRON CG5445
3R	23452230	3R_23452230_DEL [dm3] 3R_27626508_DEL [dm6]	AA	A	1.567e^-4	0.792	UPSTREAM CG5612 INTRON Tusp
X	19049876	X_19049876_SNP [dm3] X_19155843_SNP [dm6]	A	G	1.575e^-4	0.792	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	16697567	X_16697567_DEL [dm3] X_16803534_DEL [dm6]	TACCTC	A	1.575e^-4	0.792	UPSTREAM CG13005 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6830586	2L_6830586_SNP [dm3] 2L_6830586_SNP [dm6]	G	A	1.576e^-4	0.792	INTRON sens-2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	5529817	X_5529817_SNP [dm3] X_5635784_SNP [dm6]	A	G	1.581e^-4	0.792	INTRON CG42492	TF binding site BDTNP1_TFBS_dl
3R	8967667	3R_8967667_SNP [dm3] 3R_13141945_SNP [dm6]	A	G	1.585e^-4	0.792	INTRON timeout & 2 others
3R	17493368	3R_17493368_SNP [dm3] 3R_21667646_SNP [dm6]	A	C	1.587e^-4	0.792	DOWNSTREAM CG15497 INTRON DNApol-alpha180	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	839866	3L_839866_SNP [dm3] 3L_839866_SNP [dm6]	A	G	1.596e^-4	0.792	UTR_3_PRIME CG13887 DOWNSTREAM CG13902 & 1 other	TF binding site mE1_TFBS_sens
X	18721075	X_18721075_SNP [dm3] X_18827042_SNP [dm6]	A	T	1.596e^-4	0.792	UTR_3_PRIME CG42450 DOWNSTREAM CG42450
3L	17723731	3L_17723731_SNP [dm3] 3L_17730631_SNP [dm6]	A	T	1.599e^-4	0.792	INTRON Ccn
3R	7730304	3R_7730304_SNP [dm3] 3R_11904582_SNP [dm6]	C	G	1.599e^-4	0.792	INTRON Cad87A	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	22375349	2L_22375349_SNP [dm3] 2L_22375349_SNP [dm6]	G	T	1.629e^-4	0.792	INTERGENIC	transposable element FlyBase
2L	22344434	2L_22344434_SNP [dm3] 2L_22344434_SNP [dm6]	C	A	1.635e^-4	0.792	INTRON CG17018
2R	16237454	2R_16237454_SNP [dm3] 2R_20349949_SNP [dm6]	A	T	1.639e^-4	0.792	INTERGENIC
2R	13430176	2R_13430176_SNP [dm3] 2R_17542671_SNP [dm6]	A	C	1.643e^-4	0.792	NON_SYNONYMOUS_CODING CG43370	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
X	2556239	X_2556239_SNP [dm3] X_2662206_SNP [dm6]	G	T	1.648e^-4	0.792	INTRON sgg
X	16294756	X_16294756_SNP [dm3] X_16400723_SNP [dm6]	A	C	1.656e^-4	0.792	NON_SYNONYMOUS_CODING CG9981 DOWNSTREAM mei-41	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5842613	3R_5842613_SNP [dm3] 3R_10016891_SNP [dm6]	T	G	1.664e^-4	0.792	INTRON Mical
3L	10582957	3L_10582957_SNP [dm3] 3L_10589857_SNP [dm6]	T	A	1.670e^-4	0.792	INTRON A2bp1
3L	3430694	3L_3430694_SNP [dm3] 3L_3430694_SNP [dm6]	T	G	1.674e^-4	0.792	INTRON eIF5B
3L	3168635	3L_3168635_SNP [dm3] 3L_3168635_SNP [dm6]	C	T	1.681e^-4	0.792	UTR_3_PRIME CG32280 UPSTREAM CG32278 & 1 other
3L	4952152	3L_4952152_SNP [dm3] 3L_4952152_SNP [dm6]	A	G	1.681e^-4	0.792	INTRON Con	TF binding site mE1_TFBS_chinmo
2L	4141930	2L_4141930_SNP [dm3] 2L_4141930_SNP [dm6]	G	A	1.685e^-4	0.792	INTERGENIC
2L	5802593	2L_5802593_SNP [dm3] 2L_5802593_SNP [dm6]	C	T	1.688e^-4	0.792	SYNONYMOUS_CODING CG7239 UPSTREAM CG14005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18139103	3L_18139103_SNP [dm3] 3L_18146003_SNP [dm6]	T	C	1.690e^-4	0.792	DOWNSTREAM gk INTERGENIC
2L	6100321	2L_6100321_SNP [dm3] 2L_6100321_SNP [dm6]	T	C	1.695e^-4	0.792	UPSTREAM stai INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	1616364	X_1616364_SNP [dm3] X_1722331_SNP [dm6]	C	G	1.695e^-4	0.792	INTERGENIC
2L	14045631	2L_14045631_SNP [dm3] 2L_14045631_SNP [dm6]	G	A	1.698e^-4	0.792	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	18047857	X_18047857_SNP [dm3] X_18153824_SNP [dm6]	C	A	1.699e^-4	0.792	INTERGENIC
3R	21888984	3R_21888984_SNP [dm3] 3R_26063262_SNP [dm6]	G	T	1.710e^-4	0.792	UPSTREAM CG14551 INTERGENIC
3R	26338422	3R_26338422_SNP [dm3] 3R_30512700_SNP [dm6]	G	A	1.711e^-4	0.792	SYNONYMOUS_CODING CG31524 UPSTREAM PH4alphaNE2
2L	7339950	2L_7339950_SNP [dm3] 2L_7339950_SNP [dm6]	G	A	1.716e^-4	0.792	INTRON Wnt6	TF binding site mE1_TFBS_Trl
3R	5806591	3R_5806591_SNP [dm3] 3R_9980869_SNP [dm6]	C	T	1.717e^-4	0.792	INTRON Glut4EF
2R	16429744	2R_16429744_SNP [dm3] 2R_20542239_SNP [dm6]	G	A	1.722e^-4	0.792	UPSTREAM CR44652 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14496223	2L_14496223_SNP [dm3] 2L_14496223_SNP [dm6]	A	T	1.731e^-4	0.792	DOWNSTREAM tRNA:P:35Bd & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	14451418	3R_14451418_SNP [dm3] 3R_18625696_SNP [dm6]	C	G	1.734e^-4	0.792	INTRON qin
3L	7319000	3L_7319000_SNP [dm3] 3L_7325900_SNP [dm6]	T	A	1.737e^-4	0.792	DOWNSTREAM CG8602 INTRON Rint1	TF binding site mE1_TFBS_chinmo
2L	15445625	2L_15445625_SNP [dm3] 2L_15445625_SNP [dm6]	G	C	1.737e^-4	0.792	INTERGENIC
2L	8259389	2L_8259389_SNP [dm3] 2L_8259389_SNP [dm6]	T	C	1.743e^-4	0.792	UTR_3_PRIME Btk29A UPSTREAM mir-2b-1 DOWNSTREAM Btk29A
2R	18394278	2R_18394278_SNP [dm3] 2R_22506773_SNP [dm6]	G	T	1.757e^-4	0.792	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
2L	3337738	2L_3337738_SNP [dm3] 2L_3337738_SNP [dm6]	G	A	1.759e^-4	0.792	SYNONYMOUS_CODING E23	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	22361238	2L_22361238_SNP [dm3] 2L_22361238_SNP [dm6]	T	G	1.762e^-4	0.792	INTRON CG17018	transposable element FlyBase
3R	15341085	3R_15341085_SNP [dm3] 3R_19515363_SNP [dm6]	G	T	1.766e^-4	0.792	INTRON Dys
2R	17927467	2R_17927467_SNP [dm3] 2R_22039962_SNP [dm6]	T	G	1.770e^-4	0.792	UPSTREAM CG34370 INTERGENIC
3R	14235062	3R_14235062_SNP [dm3] 3R_18409340_SNP [dm6]	A	G	1.775e^-4	0.792	SYNONYMOUS_CODING CG31122 DOWNSTREAM CG10864
3R	26020786	3R_26020786_SNP [dm3] 3R_30195064_SNP [dm6]	A	G	1.776e^-4	0.792	NON_SYNONYMOUS_CODING CG15531
3L	16284821	3L_16284821_SNP [dm3] 3L_16291721_SNP [dm6]	C	T	1.781e^-4	0.792	UPSTREAM CG13045 INTERGENIC
2L	6105563	2L_6105563_SNP [dm3] 2L_6105563_SNP [dm6]	A	G	1.786e^-4	0.792	INTRON stai
X	14381956	X_14381956_SNP [dm3] X_14487923_SNP [dm6]	G	C	1.786e^-4	0.792	INTERGENIC
X	2086009	X_2086009_SNP [dm3] X_2191976_SNP [dm6]	G	A	1.786e^-4	0.792	UTR_3_PRIME CG14053 INTRON Mct1	TF binding site mE1_TFBS_HSA
2L	10065314	2L_10065314_SNP [dm3] 2L_10065314_SNP [dm6]	G	A	1.788e^-4	0.792	SPLICE_SITE_REGION CG44153 SYNONYMOUS_CODING CG44153	TF binding site mE1_TFBS_chinmo
3L	6212720	3L_6212720_SNP [dm3] 3L_6219620_SNP [dm6]	G	A	1.788e^-4	0.792	UPSTREAM pncr008:3L INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16876945	3L_16876945_SNP [dm3] 3L_16883845_SNP [dm6]	G	A	1.792e^-4	0.792	INTRON Lmpt
2L	14094652	2L_14094652_SNP [dm3] 2L_14094652_SNP [dm6]	C	G	1.796e^-4	0.792	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	14106429	2L_14106429_SNP [dm3] 2L_14106429_SNP [dm6]	G	A	1.801e^-4	0.792	SYNONYMOUS_CODING CG16879
2R	16040348	2R_16040348_SNP [dm3] 2R_20152843_SNP [dm6]	A	G	1.803e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	8933796	2L_8933796_SNP [dm3] 2L_8933796_SNP [dm6]	C	T	1.804e^-4	0.792	UPSTREAM Tsp29Fa DOWNSTREAM CG34398 INTERGENIC
2L	14522799	2L_14522799_SNP [dm3] 2L_14522799_SNP [dm6]	G	C	1.809e^-4	0.792	INTERGENIC
3L	18543864	3L_18543864_SNP [dm3] 3L_18550764_SNP [dm6]	A	T	1.812e^-4	0.792	INTERGENIC
3R	22159200	3R_22159200_SNP [dm3] 3R_26333478_SNP [dm6]	C	G	1.814e^-4	0.792	INTRON CG33970
2L	17387290	2L_17387290_SNP [dm3] 2L_17387290_SNP [dm6]	T	G	1.818e^-4	0.792	INTRON CLIP-190
3R	11208680	3R_11208680_SNP [dm3] 3R_15382958_SNP [dm6]	G	A	1.821e^-4	0.792	UPSTREAM Rbp & 1 other INTRON Rbp
2L	22322737	2L_22322737_SNP [dm3] 2L_22322737_SNP [dm6]	T	C	1.831e^-4	0.792	INTRON CG17018
2R	17664509	2R_17664509_SNP [dm3] 2R_21777004_SNP [dm6]	A	G	1.833e^-4	0.792	INTERGENIC
2L	14094622	2L_14094622_SNP [dm3] 2L_14094622_SNP [dm6]	A	G	1.833e^-4	0.792	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	14655259	2R_14655259_SNP [dm3] 2R_18767754_SNP [dm6]	A	T	1.836e^-4	0.792	INTRON Mctp
3L	8561015	3L_8561015_SNP [dm3] 3L_8567915_SNP [dm6]	A	T	1.837e^-4	0.792	NON_SYNONYMOUS_CODING rhea UTR_3_PRIME rhea	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	6875016	X_6875016_SNP [dm3] X_6980983_SNP [dm6]	C	A	1.837e^-4	0.792	START_GAINED ogre UTR_5_PRIME ogre INTRON ogre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	8401759	X_8401759_SNP [dm3] X_8507726_SNP [dm6]	A	G	1.845e^-4	0.792	INTRON CG33181
3L	16348566	3L_16348566_SNP [dm3] 3L_16355466_SNP [dm6]	C	G	1.846e^-4	0.792	INTRON CG45057
3R	5902758	3R_5902758_SNP [dm3] 3R_10077036_SNP [dm6]	A	G	1.850e^-4	0.792	INTERGENIC
3L	8573322	3L_8573322_SNP [dm3] 3L_8580222_SNP [dm6]	A	G	1.853e^-4	0.792	INTRON CG43078
2L	2588834	2L_2588834_SNP [dm3] 2L_2588834_SNP [dm6]	C	G	1.853e^-4	0.792	INTERGENIC
3R	4861635	3R_4861635_SNP [dm3] 3R_9035913_SNP [dm6]	C	A	1.854e^-4	0.792	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	24234239	3L_24234239_SNP [dm3] 3L_24241139_SNP [dm6]	C	T	1.854e^-4	0.792	INTRON Snap25
3R	5847307	3R_5847307_SNP [dm3] 3R_10021585_SNP [dm6]	A	T	1.866e^-4	0.794	UPSTREAM Mical INTRON Mical	TF binding site mE1_TFBS_HSA
3R	4690398	3R_4690398_SNP [dm3] 3R_8864676_SNP [dm6]	A	T	1.881e^-4	0.794	UPSTREAM pyd INTRON pyd
2L	3245968	2L_3245968_SNP [dm3] 2L_3245968_SNP [dm6]	T	A	1.885e^-4	0.794	INTERGENIC
3L	15628408	3L_15628408_SNP [dm3] 3L_15635308_SNP [dm6]	T	A	1.889e^-4	0.794	UPSTREAM comm3 INTRON comm3
X	2040741	X_2040741_DEL [dm3] X_2146708_DEL [dm6]	ACAAAGGTTATTGATTATCA...	A	1.894e^-4	0.794	INTRON Pgd	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	14724506	2R_14724506_SNP [dm3] 2R_18837001_SNP [dm6]	T	A	1.896e^-4	0.794	UTR_3_PRIME CG15099 DOWNSTREAM CG15083
2R	14175466	2R_14175466_DEL [dm3] 2R_18287961_DEL [dm6]	GG	G	1.901e^-4	0.794	UPSTREAM CG14502 INTRON sbb	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	7895908	X_7895908_SNP [dm3] X_8001875_SNP [dm6]	G	C	1.913e^-4	0.794	INTRON Tbh
X	11306356	X_11306356_SNP [dm3] X_11412323_SNP [dm6]	G	T	1.917e^-4	0.794	SYNONYMOUS_CODING Gr10b DOWNSTREAM CG15196
3L	9422722	3L_9422722_SNP [dm3] 3L_9429622_SNP [dm6]	G	C	1.922e^-4	0.794	UPSTREAM MTF-1 & 1 other DOWNSTREAM Shc INTRON RpS17	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4709630	3L_4709630_SNP [dm3] 3L_4709630_SNP [dm6]	G	A	1.922e^-4	0.794	NON_SYNONYMOUS_CODING CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	2763286	2L_2763286_SNP [dm3] 2L_2763286_SNP [dm6]	T	A	1.923e^-4	0.794	UTR_3_PRIME Trn-SR DOWNSTREAM CG3077
2L	5509301	2L_5509301_SNP [dm3] 2L_5509301_SNP [dm6]	C	T	1.924e^-4	0.794	INTERGENIC
3L	22600666	3L_22600666_SNP [dm3] 3L_22607566_SNP [dm6]	G	A	1.925e^-4	0.794	DOWNSTREAM CG6914 INTRON CG14459
3R	4543850	3R_4543850_SNP [dm3] 3R_8718128_SNP [dm6]	G	A	1.926e^-4	0.794	UTR_3_PRIME CG8116 INTRON Cks85A
3R	17297115	3R_17297115_SNP [dm3] 3R_21471393_SNP [dm6]	A	G	1.926e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2302364	X_2302364_SNP [dm3] X_2408331_SNP [dm6]	A	G	1.932e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	13424096	2L_13424096_SNP [dm3] 2L_13424096_SNP [dm6]	C	A	1.939e^-4	0.794	INTRON CG42784
2L	14094993	2L_14094993_SNP [dm3] 2L_14094993_SNP [dm6]	A	G	1.940e^-4	0.794	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	21875826	3R_21875826_SNP [dm3] 3R_26050104_SNP [dm6]	T	C	1.942e^-4	0.794	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro
3L	6876359	3L_6876359_SNP [dm3] 3L_6883259_SNP [dm6]	C	G	1.950e^-4	0.795	DOWNSTREAM CR45416 INTERGENIC
2L	6899945	2L_6899945_INS [dm3] 2L_6899945_INS [dm6]	G	GG	1.954e^-4	0.795	INTRON Nlg2
3L	5550048	3L_5550048_DEL [dm3] 3L_5556948_DEL [dm6]	ATTCCTTGTATA...	A	1.964e^-4	0.797	INTERGENIC
2L	8933816	2L_8933816_SNP [dm3] 2L_8933816_SNP [dm6]	T	G	1.975e^-4	0.8	UPSTREAM Tsp29Fa DOWNSTREAM CG34398 INTERGENIC
3R	5805136	3R_5805136_SNP [dm3] 3R_9979414_SNP [dm6]	C	T	1.987e^-4	0.802	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2092151	3L_2092151_SNP [dm3] 3L_2092151_SNP [dm6]	T	C	1.991e^-4	0.802	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1077598	3R_1077598_SNP [dm3] 3R_5251876_SNP [dm6]	C	T	1.992e^-4	0.802	UPSTREAM CG12163 INTRON CR44019	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA
3L	10462779	3L_10462779_SNP [dm3] 3L_10469679_SNP [dm6]	G	A	2.015e^-4	0.805	DOWNSTREAM S-Lap3 INTERGENIC
3L	18643448	3L_18643448_SNP [dm3] 3L_18650348_SNP [dm6]	G	C	2.017e^-4	0.805	INTRON MYPT-75D
3L	5985001	3L_5985001_SNP [dm3] 3L_5991901_SNP [dm6]	C	G	2.020e^-4	0.805	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2762016	2L_2762016_SNP [dm3] 2L_2762016_SNP [dm6]	A	T	2.022e^-4	0.805	NON_SYNONYMOUS_CODING Trn-SR
3L	6876378	3L_6876378_DEL [dm3] 3L_6883278_DEL [dm6]	TT	T	2.023e^-4	0.805	DOWNSTREAM CR45416 INTERGENIC
3R	5847316	3R_5847316_SNP [dm3] 3R_10021594_SNP [dm6]	G	A	2.031e^-4	0.805	UPSTREAM Mical INTRON Mical	TF binding site mE1_TFBS_HSA
2L	10062208	2L_10062208_DEL [dm3] 2L_10062208_DEL [dm6]	TAT	T	2.031e^-4	0.805	INTRON Spn31A
3L	20542356	3L_20542356_SNP [dm3] 3L_20549256_SNP [dm6]	G	A	2.048e^-4	0.807	INTERGENIC
3R	8519201	3R_8519201_SNP [dm3] 3R_12693479_SNP [dm6]	A	G	2.050e^-4	0.807	SYNONYMOUS_CODING Arp1 UPSTREAM CG31347 DOWNSTREAM CG14391	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24165441	3R_24165441_DEL [dm3] 3R_28339719_DEL [dm6]	AA	A	2.053e^-4	0.807	UTR_5_PRIME Gfat2 UPSTREAM Moca-cyp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	16435123	3L_16435123_SNP [dm3] 3L_16442023_SNP [dm6]	G	T	2.054e^-4	0.807	INTRON CG33158 & 1 other
3L	4930800	3L_4930800_SNP [dm3] 3L_4930800_SNP [dm6]	T	A	2.061e^-4	0.807	INTRON CR43627	regulatory region REDfly_CRMs
3R	14235047	3R_14235047_SNP [dm3] 3R_18409325_SNP [dm6]	A	C	2.062e^-4	0.807	SPLICE_SITE_REGION CG31122 DOWNSTREAM CG10864 INTRON CG31122
2R	8905704	2R_8905704_SNP [dm3] 2R_13018199_SNP [dm6]	A	G	2.069e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	2765447	2L_2765447_SNP [dm3] 2L_2765447_SNP [dm6]	G	C	2.074e^-4	0.807	UPSTREAM aph-1 INTRON CG3077	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	11275186	3R_11275186_SNP [dm3] 3R_15449464_SNP [dm6]	T	C	2.083e^-4	0.807	SYNONYMOUS_CODING AdamTS-A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10917052	3L_10917052_SNP [dm3] 3L_10923952_SNP [dm6]	T	C	2.085e^-4	0.807	INTERGENIC
3L	22599229	3L_22599229_INS [dm3] 3L_22606129_INS [dm6]	G	GG	2.085e^-4	0.807	UPSTREAM CG6914 INTRON CG14459	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6283162	3L_6283162_SNP [dm3] 3L_6290062_SNP [dm6]	A	G	2.088e^-4	0.807	INTERGENIC
3R	7729918	3R_7729918_SNP [dm3] 3R_11904196_SNP [dm6]	T	C	2.092e^-4	0.807	INTRON Cad87A
3R	26161028	3R_26161028_SNP [dm3] 3R_30335306_SNP [dm6]	C	T	2.105e^-4	0.809	INTRON hdc
2L	1340247	2L_1340247_INS [dm3] 2L_1340247_INS [dm6]	C	CC	2.107e^-4	0.809	INTERGENIC
2R	12458939	2R_12458939_SNP [dm3] 2R_16571434_SNP [dm6]	A	G	2.110e^-4	0.809	UPSTREAM CG4927 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14771817	2L_14771817_SNP [dm3] 2L_14771817_SNP [dm6]	A	T	2.122e^-4	0.809	INTERGENIC
X	16436481	X_16436481_DEL [dm3] X_16542448_DEL [dm6]	GG	G	2.125e^-4	0.809	UTR_3_PRIME CG9902
2L	22356933	2L_22356933_SNP [dm3] 2L_22356933_SNP [dm6]	G	A	2.126e^-4	0.809	UTR_5_PRIME CG17018 INTRON CG17018
3R	2739930	3R_2739930_SNP [dm3] 3R_6914208_SNP [dm6]	G	C	2.131e^-4	0.809	INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3R	21037446	3R_21037446_SNP [dm3] 3R_25211724_SNP [dm6]	C	A	2.135e^-4	0.809	SYNONYMOUS_CODING CG13654	TF binding site mE1_TFBS_cad
X	4477237	X_4477237_SNP [dm3] X_4583204_SNP [dm6]	G	A	2.148e^-4	0.809	INTRON CR32773
3L	5095180	3L_5095180_SNP [dm3] 3L_5095180_SNP [dm6]	C	A	2.155e^-4	0.809	INTERGENIC
2R	17264018	2R_17264018_SNP [dm3] 2R_21376513_SNP [dm6]	T	G	2.164e^-4	0.809	INTRON cv-2
3R	1570539	3R_1570539_SNP [dm3] 3R_5744817_SNP [dm6]	A	C	2.173e^-4	0.809	INTRON Madm	TF binding site mE1_TFBS_inv
X	2073570	X_2073570_SNP [dm3] X_2179537_SNP [dm6]	C	T	2.173e^-4	0.809	SYNONYMOUS_CODING Cyp4ae1 DOWNSTREAM Cyp4d2 EXON CR44690	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	14496224	2L_14496224_SNP [dm3] 2L_14496224_SNP [dm6]	T	G	2.175e^-4	0.809	DOWNSTREAM tRNA:P:35Bd & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	3169837	3L_3169837_SNP [dm3] 3L_3169837_SNP [dm6]	G	A	2.176e^-4	0.809	SYNONYMOUS_CODING CG32281 DOWNSTREAM CG32280 INTRON CG32278	TF binding site mE1_TFBS_sens
3R	1586113	3R_1586113_SNP [dm3] 3R_5760391_SNP [dm6]	T	C	2.188e^-4	0.809	DOWNSTREAM CG2082 INTRON CG2082	TF binding site mE1_TFBS_HSA
3L	18559286	3L_18559286_SNP [dm3] 3L_18566186_SNP [dm6]	A	T	2.208e^-4	0.809	INTRON AstC-R1
3L	4392048	3L_4392048_SNP [dm3] 3L_4392048_SNP [dm6]	T	G	2.216e^-4	0.809	INTRON slow	TF binding site mE1_TFBS_cad
3R	15319247	3R_15319247_SNP [dm3] 3R_19493525_SNP [dm6]	A	T	2.219e^-4	0.809	INTRON Dys
X	5449568	X_5449568_SNP [dm3] X_5555535_SNP [dm6]	C	T	2.224e^-4	0.809	INTRON Vsx2	TF binding site mE1_TFBS_cnc mE1_TFBS_Kr
3R	8935138	3R_8935138_SNP [dm3] 3R_13109416_SNP [dm6]	C	T	2.227e^-4	0.809	INTRON timeout
3L	10465626	3L_10465626_SNP [dm3] 3L_10472526_SNP [dm6]	G	A	2.231e^-4	0.809	INTERGENIC
3R	8519816	3R_8519816_SNP [dm3] 3R_12694094_SNP [dm6]	C	A	2.231e^-4	0.809	UTR_3_PRIME Arp1 DOWNSTREAM CG14391
3L	4392536	3L_4392536_SNP [dm3] 3L_4392536_SNP [dm6]	C	A	2.231e^-4	0.809	INTRON slow
2R	13427984	2R_13427984_SNP [dm3] 2R_17540479_SNP [dm6]	A	C	2.238e^-4	0.809	SYNONYMOUS_CODING CG43370	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5892534	2L_5892534_SNP [dm3] 2L_5892534_SNP [dm6]	C	T	2.242e^-4	0.809	SYNONYMOUS_CODING Acp26Ab DOWNSTREAM Acp26Aa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	6190789	X_6190789_SNP [dm3] X_6296756_SNP [dm6]	C	G	2.242e^-4	0.809	SYNONYMOUS_CODING CG3815	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	7014824	2L_7014824_SNP [dm3] 2L_7014824_SNP [dm6]	T	A	2.247e^-4	0.809	UTR_3_PRIME ade3 DOWNSTREAM ade3 & 1 other
X	18320024	X_18320024_DEL [dm3] X_18425991_DEL [dm6]	GTGG	G	2.248e^-4	0.809	INTRON CG42323
3R	9024385	3R_9024385_SNP [dm3] 3R_13198663_SNP [dm6]	G	C	2.250e^-4	0.809	INTERGENIC
3L	7838629	3L_7838629_SNP [dm3] 3L_7845529_SNP [dm6]	A	T	2.251e^-4	0.809	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
3L	10466227	3L_10466227_SNP [dm3] 3L_10473127_SNP [dm6]	T	C	2.258e^-4	0.809	INTERGENIC
3R	5806766	3R_5806766_SNP [dm3] 3R_9981044_SNP [dm6]	T	A	2.259e^-4	0.809	INTRON Glut4EF
2R	13441202	2R_13441202_SNP [dm3] 2R_17553697_SNP [dm6]	C	G	2.262e^-4	0.809	NON_SYNONYMOUS_CODING MESR4
3R	19038647	3R_19038647_SNP [dm3] 3R_23212925_SNP [dm6]	T	C	2.265e^-4	0.809	INTRON cnc	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	3676850	2L_3676850_SNP [dm3] 2L_3676850_SNP [dm6]	A	G	2.276e^-4	0.809	INTRON CG34340
3R	10370352	3R_10370352_SNP [dm3] 3R_14544630_SNP [dm6]	G	A	2.280e^-4	0.809	INTRON Pde6
3R	26324988	3R_26324988_SNP [dm3] 3R_30499266_SNP [dm6]	C	A	2.281e^-4	0.809	INTRON PH4alphaNE1	TF binding site mE1_TFBS_cad
2L	6899968	2L_6899968_SNP [dm3] 2L_6899968_SNP [dm6]	A	G	2.286e^-4	0.809	INTRON Nlg2
X	17567115	X_17567115_SNP [dm3] X_17673082_SNP [dm6]	C	T	2.304e^-4	0.809	UTR_3_PRIME chas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7044606	2L_7044606_SNP [dm3] 2L_7044606_SNP [dm6]	A	T	2.314e^-4	0.809	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14094542	2L_14094542_SNP [dm3] 2L_14094542_SNP [dm6]	A	G	2.315e^-4	0.809	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	3425650	3L_3425650_SNP [dm3] 3L_3425650_SNP [dm6]	T	C	2.316e^-4	0.809	UPSTREAM sty INTERGENIC
X	15075828	X_15075828_SNP [dm3] X_15181795_SNP [dm6]	C	T	2.318e^-4	0.809	INTRON CG43737
3R	8929806	3R_8929806_SNP [dm3] 3R_13104084_SNP [dm6]	T	C	2.318e^-4	0.809	INTRON timeout
X	15797193	X_15797193_SNP [dm3] X_15903160_SNP [dm6]	T	C	2.323e^-4	0.809	INTRON shi
2L	15463725	2L_15463725_SNP [dm3] 2L_15463725_SNP [dm6]	C	A	2.337e^-4	0.809	DOWNSTREAM CR44863 INTERGENIC
X	8401699	X_8401699_SNP [dm3] X_8507666_SNP [dm6]	A	G	2.338e^-4	0.809	INTRON CG33181
2L	18613841	2L_18613841_SNP [dm3] 2L_18613841_SNP [dm6]	A	G	2.341e^-4	0.809	DOWNSTREAM CG15161 INTERGENIC
3L	5095210	3L_5095210_SNP [dm3] 3L_5095210_SNP [dm6]	G	A	2.346e^-4	0.809	INTERGENIC
3L	7157188	3L_7157188_SNP [dm3] 3L_7164088_SNP [dm6]	G	A	2.347e^-4	0.809	INTRON Dscam2
3R	13264202	3R_13264202_SNP [dm3] 3R_17438480_SNP [dm6]	C	T	2.354e^-4	0.809	DOWNSTREAM CG14331 INTRON CG5873
3R	23636288	3R_23636288_SNP [dm3] 3R_27810566_SNP [dm6]	T	C	2.355e^-4	0.809	INTRON CG34353	TF binding site mE1_TFBS_chinmo
3R	14237647	3R_14237647_SNP [dm3] 3R_18411925_SNP [dm6]	T	C	2.356e^-4	0.809	UPSTREAM CG10864 INTRON CG31122	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	5847869	3R_5847869_SNP [dm3] 3R_10022147_SNP [dm6]	C	G	2.367e^-4	0.809	UPSTREAM Mical DOWNSTREAM CG31407 INTRON Mical	TF binding site mE1_TFBS_inv
3R	22470760	3R_22470760_INS [dm3] 3R_26645038_INS [dm6]	G	AA	2.378e^-4	0.809	DOWNSTREAM beat-VII INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22896773	3R_22896773_SNP [dm3] 3R_27071051_SNP [dm6]	T	C	2.380e^-4	0.809	UPSTREAM spz INTERGENIC
X	15576870	X_15576870_SNP [dm3] X_15682837_SNP [dm6]	T	A	2.382e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	6430888	X_6430888_SNP [dm3] X_6536855_SNP [dm6]	T	C	2.385e^-4	0.809	INTRON dx	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	1794027	2L_1794027_SNP [dm3] 2L_1794027_SNP [dm6]	T	G	2.385e^-4	0.809	SYNONYMOUS_CODING Gr22a UPSTREAM Gr22b
3R	23716640	3R_23716640_SNP [dm3] 3R_27890918_SNP [dm6]	A	G	2.385e^-4	0.809	INTRON CG34353
3R	10479369	3R_10479369_SNP [dm3] 3R_14653647_SNP [dm6]	T	A	2.387e^-4	0.809	INTRON l_3_L1231	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5095782	2R_5095782_SNP [dm3] 2R_9208277_SNP [dm6]	A	G	2.389e^-4	0.809	SYNONYMOUS_CODING VhaAC45	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	10208104	3L_10208104_SNP [dm3] 3L_10215004_SNP [dm6]	C	T	2.395e^-4	0.809	UPSTREAM CG8065 INTERGENIC
2L	22321637	2L_22321637_SNP [dm3] 2L_22321637_SNP [dm6]	A	G	2.405e^-4	0.809	INTRON CG17018	transposable element FlyBase
3R	17297140	3R_17297140_SNP [dm3] 3R_21471418_SNP [dm6]	A	G	2.409e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4345444	2L_4345444_SNP [dm3] 2L_4345444_SNP [dm6]	A	T	2.420e^-4	0.809	UTR_3_PRIME Atet DOWNSTREAM Atet	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	6100284	2L_6100284_SNP [dm3] 2L_6100284_SNP [dm6]	T	C	2.422e^-4	0.809	UPSTREAM stai INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	6370525	2L_6370525_SNP [dm3] 2L_6370525_SNP [dm6]	C	T	2.426e^-4	0.809	DOWNSTREAM CG9505 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	14236499	3R_14236499_SNP [dm3] 3R_18410777_SNP [dm6]	C	A	2.444e^-4	0.809	SYNONYMOUS_CODING CG10864 UPSTREAM CG31122 INTRON CG31122	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15974341	2R_15974341_SNP [dm3] 2R_20086836_SNP [dm6]	G	T	2.446e^-4	0.809	DOWNSTREAM CR44632 INTERGENIC
3L	9422222	3L_9422222_SNP [dm3] 3L_9429122_SNP [dm6]	G	T	2.456e^-4	0.809	DOWNSTREAM snoRNA:Psi28S-612 & 1 other INTRON RpS17	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	6106122	2L_6106122_SNP [dm3] 2L_6106122_SNP [dm6]	G	T	2.457e^-4	0.809	INTRON stai
2L	15307602	2L_15307602_SNP [dm3] 2L_15307602_SNP [dm6]	T	G	2.458e^-4	0.809	INTERGENIC
3R	9195213	3R_9195213_SNP [dm3] 3R_13369491_SNP [dm6]	G	A	2.472e^-4	0.809	UPSTREAM CheA87a DOWNSTREAM Dic1 & 1 other INTERGENIC
2L	6394864	2L_6394864_SNP [dm3] 2L_6394864_SNP [dm6]	A	G	2.476e^-4	0.809	SYNONYMOUS_CODING CG42368 DOWNSTREAM CG42369
2L	22334972	2L_22334972_SNP [dm3] 2L_22334972_SNP [dm6]	G	T	2.481e^-4	0.809	INTRON CG17018	transposable element FlyBase
3R	9020907	3R_9020907_SNP [dm3] 3R_13195185_SNP [dm6]	G	A	2.484e^-4	0.809	INTERGENIC
2R	19362224	2R_19362224_SNP [dm3] 2R_23474701_SNP [dm6]	T	G	2.486e^-4	0.809	UPSTREAM Or59c DOWNSTREAM CG13557 INTRON CG43795
X	1394167	X_1394167_SNP [dm3] X_1500134_SNP [dm6]	G	A	2.486e^-4	0.809	INTRON inc & 1 other	TF binding site mE1_TFBS_chinmo
3L	3168634	3L_3168634_SNP [dm3] 3L_3168634_SNP [dm6]	G	T	2.491e^-4	0.809	UTR_3_PRIME CG32280 UPSTREAM CG32278 & 1 other
2L	1355610	2L_1355610_SNP [dm3] 2L_1355610_SNP [dm6]	G	A	2.495e^-4	0.809	SYNONYMOUS_CODING CG5565 UPSTREAM CG31924
2L	1355616	2L_1355616_SNP [dm3] 2L_1355616_SNP [dm6]	G	T	2.495e^-4	0.809	SYNONYMOUS_CODING CG5565 UPSTREAM CG31924
3L	504922	3L_504922_SNP [dm3] 3L_504922_SNP [dm6]	A	C	2.496e^-4	0.809	INTRON klar
3L	18129516	3L_18129516_SNP [dm3] 3L_18136416_SNP [dm6]	T	C	2.501e^-4	0.809	UPSTREAM CR44669 INTERGENIC
2L	6373214	2L_6373214_SNP [dm3] 2L_6373214_SNP [dm6]	C	T	2.502e^-4	0.809	UPSTREAM slam INTRON slam	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7770726	2L_7770726_SNP [dm3] 2L_7770726_SNP [dm6]	G	T	2.504e^-4	0.809	INTRON CG7191
2L	6129621	2L_6129621_SNP [dm3] 2L_6129621_SNP [dm6]	A	G	2.517e^-4	0.809	SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5149673	2L_5149673_SNP [dm3] 2L_5149673_SNP [dm6]	C	T	2.521e^-4	0.809	INTRON Msp300
X	14910049	X_14910049_SNP [dm3] X_15016016_SNP [dm6]	T	A	2.529e^-4	0.809	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13456412	2R_13456412_SNP [dm3] 2R_17568907_SNP [dm6]	T	G	2.530e^-4	0.809	UTR_5_PRIME POSH UPSTREAM Ns2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	2517777	2L_2517777_SNP [dm3] 2L_2517777_SNP [dm6]	C	T	2.535e^-4	0.809	SYNONYMOUS_CODING CG3528
3L	10186764	3L_10186764_SNP [dm3] 3L_10193664_SNP [dm6]	G	A	2.539e^-4	0.809	UTR_3_PRIME ect INTRON ect	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	7220794	2R_7220794_SNP [dm3] 2R_11333289_SNP [dm6]	T	C	2.547e^-4	0.809	SYNONYMOUS_CODING sha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2001397	3L_2001397_DEL [dm3] 3L_2001397_DEL [dm6]	AA	A	2.562e^-4	0.809	INTERGENIC
3L	2015449	3L_2015449_SNP [dm3] 3L_2015449_SNP [dm6]	G	C	2.569e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4879616	3L_4879616_SNP [dm3] 3L_4879616_SNP [dm6]	A	G	2.569e^-4	0.809	INTRON CG17150
3L	7755554	3L_7755554_SNP [dm3] 3L_7762454_SNP [dm6]	C	T	2.583e^-4	0.809	SYNONYMOUS_CODING Hn DOWNSTREAM Clk
2L	6599989	2L_6599989_SNP [dm3] 2L_6599989_SNP [dm6]	A	T	2.583e^-4	0.809	INTRON CG11319
2L	14901016	2L_14901016_SNP [dm3] 2L_14901016_SNP [dm6]	C	T	2.586e^-4	0.809	INTERGENIC
2R	17263962	2R_17263962_SNP [dm3] 2R_21376457_SNP [dm6]	T	A	2.597e^-4	0.809	INTRON cv-2
3L	10542173	3L_10542173_SNP [dm3] 3L_10549073_SNP [dm6]	T	C	2.601e^-4	0.809	INTRON A2bp1
3L	2251800	3L_2251800_SNP [dm3] 3L_2251800_SNP [dm6]	C	T	2.605e^-4	0.809	SYNONYMOUS_CODING CG32305 DOWNSTREAM CG1275	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6876454	3L_6876454_SNP [dm3] 3L_6883354_SNP [dm6]	A	G	2.605e^-4	0.809	EXON CR45416
3R	21948225	3R_21948225_DEL [dm3] 3R_26122503_DEL [dm6]	TTATTTATTTATTTATTTAT...	GG	2.609e^-4	0.809	INTRON CG31324
3L	17723778	3L_17723778_DEL [dm3] 3L_17730678_DEL [dm6]	GAGGAAA	G	2.612e^-4	0.809	INTRON Ccn
3L	17723790	3L_17723790_SNP [dm3] 3L_17730690_SNP [dm6]	C	A	2.612e^-4	0.809	INTRON Ccn
3L	15681393	3L_15681393_SNP [dm3] 3L_15688293_SNP [dm6]	T	G	2.612e^-4	0.809	UPSTREAM CG34452 DOWNSTREAM CG34451 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	911692	3L_911692_SNP [dm3] 3L_911692_SNP [dm6]	A	T	2.615e^-4	0.809	UTR_3_PRIME nerfin-1	regulatory region REDfly_CRMs
2L	13040085	2L_13040085_SNP [dm3] 2L_13040085_SNP [dm6]	T	C	2.615e^-4	0.809	INTRON CG9932
2R	8964927	2R_8964927_SNP [dm3] 2R_13077422_SNP [dm6]	A	G	2.615e^-4	0.809	INTRON Drl-2	TF binding site mE1_TFBS_cad
2L	14095223	2L_14095223_SNP [dm3] 2L_14095223_SNP [dm6]	C	T	2.628e^-4	0.809	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site mE1_TFBS_bab1
2L	17941481	2L_17941481_SNP [dm3] 2L_17941481_SNP [dm6]	A	C	2.637e^-4	0.809	INTERGENIC
3L	9276949	3L_9276949_SNP [dm3] 3L_9283849_SNP [dm6]	C	G	2.646e^-4	0.809	INTRON GluRIB
X	2063745	X_2063745_SNP [dm3] X_2169712_SNP [dm6]	A	G	2.646e^-4	0.809	INTRON CG3630
3L	10436972	3L_10436972_SNP [dm3] 3L_10443872_SNP [dm6]	C	A	2.647e^-4	0.809	INTERGENIC
2R	13392871	2R_13392871_INS [dm3] 2R_17505366_INS [dm6]	T	TT	2.655e^-4	0.809	INTRON CG43164	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA
3L	16463027	3L_16463027_SNP [dm3] 3L_16469927_SNP [dm6]	G	T	2.656e^-4	0.809	DOWNSTREAM aos INTRON CG33158
3R	10372475	3R_10372475_SNP [dm3] 3R_14546753_SNP [dm6]	A	T	2.658e^-4	0.809	INTRON Pde6
3R	17333888	3R_17333888_SNP [dm3] 3R_21508166_SNP [dm6]	G	A	2.659e^-4	0.809	INTRON C15
2L	12395159	2L_12395159_SNP [dm3] 2L_12395159_SNP [dm6]	A	G	2.662e^-4	0.809	INTRON bru-2
2L	14106414	2L_14106414_SNP [dm3] 2L_14106414_SNP [dm6]	T	A	2.672e^-4	0.809	SYNONYMOUS_CODING CG16879
2L	14515864	2L_14515864_SNP [dm3] 2L_14515864_SNP [dm6]	G	A	2.673e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_Ubx
2R	18394449	2R_18394449_SNP [dm3] 2R_22506944_SNP [dm6]	C	T	2.678e^-4	0.809	INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
2L	14496228	2L_14496228_DEL [dm3] 2L_14496228_DEL [dm6]	TCT	T	2.678e^-4	0.809	DOWNSTREAM tRNA:P:35Bd & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	21083395	3R_21083395_SNP [dm3] 3R_25257673_SNP [dm6]	C	A	2.679e^-4	0.809	NON_SYNONYMOUS_CODING Nup358	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	6282964	3L_6282964_SNP [dm3] 3L_6289864_SNP [dm6]	G	A	2.680e^-4	0.809	INTERGENIC
X	19997819	X_19997819_SNP [dm3] X_20103786_SNP [dm6]	G	T	2.686e^-4	0.809	INTERGENIC
2L	5920186	2L_5920186_SNP [dm3] 2L_5920186_SNP [dm6]	C	A	2.689e^-4	0.809	INTRON bchs	TF binding site mE1_TFBS_cad
2L	13738474	2L_13738474_SNP [dm3] 2L_13738474_SNP [dm6]	C	T	2.693e^-4	0.809	INTERGENIC
3L	6496673	3L_6496673_SNP [dm3] 3L_6503573_SNP [dm6]	A	G	2.694e^-4	0.809	INTRON sfl	TF binding site BDTNP1_TFBS_dl
X	17003096	X_17003096_SNP [dm3] X_17109063_SNP [dm6]	T	C	2.697e^-4	0.809	INTRON CG5004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16068285	3L_16068285_SNP [dm3] 3L_16075185_SNP [dm6]	C	G	2.704e^-4	0.809	INTRON Mbs	TF binding site BDTNP1_TFBS_twi
X	17503877	X_17503877_SNP [dm3] X_17609844_SNP [dm6]	G	T	2.705e^-4	0.809	INTERGENIC
3R	8932836	3R_8932836_SNP [dm3] 3R_13107114_SNP [dm6]	G	A	2.711e^-4	0.809	INTRON timeout
3L	1441191	3L_1441191_SNP [dm3] 3L_1441191_SNP [dm6]	A	G	2.721e^-4	0.809	INTRON Ptp61F
2R	13446942	2R_13446942_SNP [dm3] 2R_17559437_SNP [dm6]	G	A	2.722e^-4	0.809	INTRON Klp54D
3R	15327250	3R_15327250_SNP [dm3] 3R_19501528_SNP [dm6]	C	T	2.723e^-4	0.809	INTRON Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10462785	3L_10462785_SNP [dm3] 3L_10469685_SNP [dm6]	A	G	2.737e^-4	0.809	DOWNSTREAM S-Lap3 INTERGENIC
3R	8976991	3R_8976991_SNP [dm3] 3R_13151269_SNP [dm6]	A	G	2.740e^-4	0.809	INTRON timeout & 2 others
2L	22351236	2L_22351236_SNP [dm3] 2L_22351236_SNP [dm6]	G	A	2.748e^-4	0.809	INTRON CG17018	transposable element FlyBase
X	13122479	X_13122479_SNP [dm3] X_13228446_SNP [dm6]	G	A	2.751e^-4	0.809	INTRON mew	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15029467	2L_15029467_SNP [dm3] 2L_15029467_SNP [dm6]	C	T	2.753e^-4	0.809	SYNONYMOUS_CODING CG33310 INTRON GABA-B-R1
3L	5574408	3L_5574408_SNP [dm3] 3L_5581308_SNP [dm6]	G	A	2.753e^-4	0.809	INTERGENIC
2R	6668513	2R_6668513_SNP [dm3] 2R_10781008_SNP [dm6]	C	T	2.756e^-4	0.809	INTRON CG33144
2R	13088095	2R_13088095_SNP [dm3] 2R_17200590_SNP [dm6]	C	T	2.757e^-4	0.809	INTERGENIC
2L	17443389	2L_17443389_SNP [dm3] 2L_17443389_SNP [dm6]	T	C	2.770e^-4	0.809	INTRON dl	TF binding site BDTNP1_TFBS_dl
3R	21897001	3R_21897001_SNP [dm3] 3R_26071279_SNP [dm6]	T	A	2.774e^-4	0.809	INTRON CR44950
3R	8929414	3R_8929414_SNP [dm3] 3R_13103692_SNP [dm6]	G	T	2.776e^-4	0.809	INTRON timeout
3L	10972283	3L_10972283_SNP [dm3] 3L_10979183_SNP [dm6]	A	T	2.777e^-4	0.809	UPSTREAM CR45745 INTERGENIC
2R	13286824	2R_13286824_SNP [dm3] 2R_17399319_SNP [dm6]	C	T	2.778e^-4	0.809	INTRON Sip1
3L	3423289	3L_3423289_INS [dm3] 3L_3423289_INS [dm6]	A	ACA	2.794e^-4	0.809	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4542627	3R_4542627_SNP [dm3] 3R_8716905_SNP [dm6]	T	C	2.797e^-4	0.809	UTR_5_PRIME CG8116 INTRON Cks85A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	9169977	3L_9169977_DEL [dm3] 3L_9176877_DEL [dm6]	TT	T	2.811e^-4	0.809	INTRON Rdl
X	4707004	X_4707004_SNP [dm3] X_4812971_SNP [dm6]	A	T	2.814e^-4	0.809	INTERGENIC
3L	12545015	3L_12545015_SNP [dm3] 3L_12551915_SNP [dm6]	G	A	2.821e^-4	0.809	INTRON sowah	TF binding site mE1_TFBS_chinmo
X	1616708	X_1616708_SNP [dm3] X_1722675_SNP [dm6]	G	T	2.829e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	8282386	X_8282386_SNP [dm3] X_8388353_SNP [dm6]	A	G	2.843e^-4	0.809	SYNONYMOUS_CODING CG1387	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8933777	2L_8933777_SNP [dm3] 2L_8933777_SNP [dm6]	C	T	2.843e^-4	0.809	UPSTREAM Tsp29Fa DOWNSTREAM CG34398 INTERGENIC
2L	1562913	2L_1562913_SNP [dm3] 2L_1562913_SNP [dm6]	G	A	2.849e^-4	0.809	INTRON haf	TF binding site mE1_TFBS_inv
3L	8458071	3L_8458071_SNP [dm3] 3L_8464971_SNP [dm6]	T	C	2.849e^-4	0.809	SYNONYMOUS_CODING Gug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11303142	3L_11303142_INS [dm3] 3L_11310042_INS [dm6]	T	TC	2.851e^-4	0.809	INTERGENIC
3L	4500183	3L_4500183_SNP [dm3] 3L_4500183_SNP [dm6]	G	A	2.862e^-4	0.809	SYNONYMOUS_CODING CG13720	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4500411	3L_4500411_SNP [dm3] 3L_4500411_SNP [dm6]	G	C	2.862e^-4	0.809	NON_SYNONYMOUS_CODING CG13720	TF binding site mE1_TFBS_sens
3R	22379864	3R_22379864_SNP [dm3] 3R_26554142_SNP [dm6]	T	C	2.866e^-4	0.809	INTRON scrib
3R	11109607	3R_11109607_SNP [dm3] 3R_15283885_SNP [dm6]	A	G	2.867e^-4	0.809	INTRON Tm1
2R	9629593	2R_9629593_SNP [dm3] 2R_13742088_SNP [dm6]	C	T	2.867e^-4	0.809	INTRON fas
3L	6165439	3L_6165439_SNP [dm3] 3L_6172339_SNP [dm6]	A	G	2.869e^-4	0.809	INTRON CG10289	TF binding site mE1_TFBS_cad
3R	21910972	3R_21910972_SNP [dm3] 3R_26085250_SNP [dm6]	G	A	2.875e^-4	0.809	INTRON dys	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6873216	3L_6873216_SNP [dm3] 3L_6880116_SNP [dm6]	A	G	2.885e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4438520	3R_4438520_SNP [dm3] 3R_8612798_SNP [dm6]	G	A	2.889e^-4	0.809	INTRON 5-HT2B
3R	7001701	3R_7001701_SNP [dm3] 3R_11175979_SNP [dm6]	C	A	2.904e^-4	0.809	UPSTREAM Ugt86Dj INTRON Ugt86Dh
X	2082310	X_2082310_SNP [dm3] X_2188277_SNP [dm6]	T	G	2.910e^-4	0.809	SYNONYMOUS_CODING CG3457 UPSTREAM Mct1 DOWNSTREAM CG17777	TF binding site mE1_TFBS_chinmo
3R	8997008	3R_8997008_SNP [dm3] 3R_13171286_SNP [dm6]	C	T	2.926e^-4	0.809	INTERGENIC
3R	21690676	3R_21690676_SNP [dm3] 3R_25864954_SNP [dm6]	C	T	2.926e^-4	0.809	INTRON CG5890
3R	1579377	3R_1579377_SNP [dm3] 3R_5753655_SNP [dm6]	G	C	2.932e^-4	0.809	NON_SYNONYMOUS_CODING CG2091	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6105521	2L_6105521_SNP [dm3] 2L_6105521_SNP [dm6]	T	A	2.934e^-4	0.809	INTRON stai
2L	17416148	2L_17416148_SNP [dm3] 2L_17416148_SNP [dm6]	C	G	2.940e^-4	0.809	NON_SYNONYMOUS_CODING Dif INTRON Dif	TF binding site mE1_TFBS_inv
3R	4934321	3R_4934321_SNP [dm3] 3R_9108599_SNP [dm6]	G	A	2.940e^-4	0.809	INTRON pum
3L	7828612	3L_7828612_SNP [dm3] 3L_7835512_SNP [dm6]	T	C	2.943e^-4	0.809	INTRON Pdp1
3L	1695640	3L_1695640_SNP [dm3] 3L_1695640_SNP [dm6]	C	T	2.947e^-4	0.809	SYNONYMOUS_CODING CG12011 INTRON CG7991	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16658269	3L_16658269_SNP [dm3] 3L_16665169_SNP [dm6]	A	G	2.948e^-4	0.809	SYNONYMOUS_CODING Galphaf
3R	15355443	3R_15355443_SNP [dm3] 3R_19529721_SNP [dm6]	T	C	2.950e^-4	0.809	INTRON Dys
X	6430858	X_6430858_SNP [dm3] X_6536825_SNP [dm6]	C	T	2.954e^-4	0.809	INTRON dx	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	17443376	2L_17443376_SNP [dm3] 2L_17443376_SNP [dm6]	C	T	2.956e^-4	0.809	INTRON dl	TF binding site BDTNP1_TFBS_dl
2R	17962404	2R_17962404_SNP [dm3] 2R_22074899_SNP [dm6]	G	C	2.964e^-4	0.809	INTRON CG2921	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	6376351	2L_6376351_SNP [dm3] 2L_6376351_SNP [dm6]	A	G	2.967e^-4	0.809	SYNONYMOUS_CODING slam	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	7730385	3R_7730385_SNP [dm3] 3R_11904663_SNP [dm6]	C	T	2.981e^-4	0.809	INTRON Cad87A
3L	10209236	3L_10209236_SNP [dm3] 3L_10216136_SNP [dm6]	G	A	2.985e^-4	0.809	NON_SYNONYMOUS_CODING CG8065
3R	8937238	3R_8937238_SNP [dm3] 3R_13111516_SNP [dm6]	A	T	2.990e^-4	0.809	INTRON timeout
X	18439213	X_18439213_SNP [dm3] X_18545180_SNP [dm6]	A	G	2.995e^-4	0.809	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14448321	3R_14448321_SNP [dm3] 3R_18622599_SNP [dm6]	T	A	2.995e^-4	0.809	INTRON qin	TF binding site mE1_TFBS_inv
2R	10001272	2R_10001272_SNP [dm3] 2R_14113767_SNP [dm6]	C	G	3.000e^-4	0.809	INTRON Prosap	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	7693928	3R_7693928_SNP [dm3] 3R_11868206_SNP [dm6]	A	T	3.001e^-4	0.809	INTRON CG6959
X	10752259	X_10752259_SNP [dm3] X_10858226_SNP [dm6]	A	T	3.005e^-4	0.809	UPSTREAM sofe INTRON CG2186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18214878	X_18214878_SNP [dm3] X_18320845_SNP [dm6]	T	C	3.008e^-4	0.809	INTRON CG6023	TF binding site BDTNP1_TFBS_dl
3R	14779776	3R_14779776_DEL [dm3] 3R_18954054_DEL [dm6]	CA	T	3.009e^-4	0.809	INTRON CG42613 & 1 other
3L	3945176	3L_3945176_SNP [dm3] 3L_3945176_SNP [dm6]	C	T	3.011e^-4	0.809	SYNONYMOUS_CODING CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
3R	26600800	3R_26600800_SNP [dm3] 3R_30775078_SNP [dm6]	T	G	3.014e^-4	0.809	INTRON zfh1	TF binding site mE1_TFBS_cad
3R	26499543	3R_26499543_SNP [dm3] 3R_30673821_SNP [dm6]	A	C	3.027e^-4	0.809	INTERGENIC
2R	16988446	2R_16988446_SNP [dm3] 2R_21100941_SNP [dm6]	G	A	3.028e^-4	0.809	NON_SYNONYMOUS_CODING CG34396 UPSTREAM ktub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	6874760	X_6874760_SNP [dm3] X_6980727_SNP [dm6]	A	C	3.036e^-4	0.809	INTRON ogre	TF binding site mE1_TFBS_sens
3L	18603160	3L_18603160_SNP [dm3] 3L_18610060_SNP [dm6]	A	T	3.039e^-4	0.809	DOWNSTREAM CG18231 INTRON CG4174 & 2 others
2L	22348966	2L_22348966_SNP [dm3] 2L_22348966_SNP [dm6]	C	T	3.041e^-4	0.809	INTRON CG17018	transposable element FlyBase
3L	2378414	3L_2378414_INS [dm3] 3L_2378414_INS [dm6]	A	AA	3.042e^-4	0.809	UPSTREAM CG15877 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	22582843	3L_22582843_SNP [dm3] 3L_22589743_SNP [dm6]	C	T	3.052e^-4	0.809	INTRON CG14459	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	23452246	3R_23452246_INS [dm3] 3R_27626524_INS [dm6]	A	AC	3.055e^-4	0.809	UPSTREAM CG5612 INTRON Tusp
2R	9695178	2R_9695178_SNP [dm3] 2R_13807673_SNP [dm6]	T	G	3.056e^-4	0.809	INTRON stj
2R	15563748	2R_15563748_SNP [dm3] 2R_19676243_SNP [dm6]	G	A	3.058e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_cad
3R	9271529	3R_9271529_SNP [dm3] 3R_13445807_SNP [dm6]	G	C	3.060e^-4	0.809	INTERGENIC
X	13122387	X_13122387_SNP [dm3] X_13228354_SNP [dm6]	A	C	3.060e^-4	0.809	INTRON mew	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2040738	3L_2040738_DEL [dm3] 3L_2040738_DEL [dm6]	AAGTGTGAATCTA...	A	3.062e^-4	0.809	INTRON sls
2L	22340173	2L_22340173_DEL [dm3] 2L_22340173_DEL [dm6]	GCGTACAT	G	3.063e^-4	0.809	UPSTREAM CR43359 INTRON CG17018
3L	3419747	3L_3419747_SNP [dm3] 3L_3419747_SNP [dm6]	C	A	3.077e^-4	0.809	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14958662	3L_14958662_SNP [dm3] 3L_14965562_SNP [dm6]	T	A	3.079e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	10040541	X_10040541_SNP [dm3] X_10146508_SNP [dm6]	T	C	3.082e^-4	0.809	SYNONYMOUS_CODING RhoU INTRON CR44894
3L	10466393	3L_10466393_SNP [dm3] 3L_10473293_SNP [dm6]	A	C	3.085e^-4	0.809	INTERGENIC
3L	22530726	3L_22530726_SNP [dm3] 3L_22537626_SNP [dm6]	A	G	3.089e^-4	0.809	INTERGENIC
3L	2018230	3L_2018230_SNP [dm3] 3L_2018230_SNP [dm6]	A	T	3.093e^-4	0.809	INTERGENIC
3R	9096463	3R_9096463_DEL [dm3] 3R_13270741_DEL [dm6]	AC	T	3.094e^-4	0.809	DOWNSTREAM Su_var_3-7 INTRON CG8449
X	14909372	X_14909372_SNP [dm3] X_15015339_SNP [dm6]	A	G	3.112e^-4	0.809	SPLICE_SITE_REGION hiw INTRON hiw	TF binding site mE1_TFBS_chinmo
3L	1773078	3L_1773078_SNP [dm3] 3L_1773078_SNP [dm6]	A	G	3.113e^-4	0.809	SYNONYMOUS_CODING CG13933 UPSTREAM CR44351	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	19027348	3R_19027348_SNP [dm3] 3R_23201626_SNP [dm6]	G	T	3.120e^-4	0.809	UPSTREAM cnc DOWNSTREAM fzo INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	4958625	3L_4958625_SNP [dm3] 3L_4958625_SNP [dm6]	T	G	3.137e^-4	0.809	INTRON Con
2L	8652223	2L_8652223_SNP [dm3] 2L_8652223_SNP [dm6]	G	A	3.139e^-4	0.809	INTRON Sema-1a
3R	20795816	3R_20795816_SNP [dm3] 3R_24970094_SNP [dm6]	G	A	3.142e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9591946	2L_9591946_SNP [dm3] 2L_9591946_SNP [dm6]	A	G	3.150e^-4	0.809	DOWNSTREAM CG3841 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
2L	7517687	2L_7517687_INS [dm3] 2L_7517687_INS [dm6]	A	ATTTACCA	3.150e^-4	0.809	INTRON RapGAP1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	17627365	3R_17627365_SNP [dm3] 3R_21801643_SNP [dm6]	T	C	3.159e^-4	0.809	INTRON CASK
3R	25340269	3R_25340269_SNP [dm3] 3R_29514547_SNP [dm6]	A	T	3.168e^-4	0.809	INTERGENIC
2L	8930813	2L_8930813_SNP [dm3] 2L_8930813_SNP [dm6]	C	T	3.170e^-4	0.809	INTRON CG34398	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	1589571	3R_1589571_SNP [dm3] 3R_5763849_SNP [dm6]	A	G	3.178e^-4	0.809	INTRON CG2082	transposable element FlyBase
X	3327696	X_3327696_SNP [dm3] X_3433663_SNP [dm6]	C	T	3.180e^-4	0.809	INTRON CR44999 & 1 other
2L	10456713	2L_10456713_SNP [dm3] 2L_10456713_SNP [dm6]	A	C	3.193e^-4	0.809	UPSTREAM CG5322 & 1 other INTRON CG5322
2L	14111736	2L_14111736_SNP [dm3] 2L_14111736_SNP [dm6]	C	G	3.194e^-4	0.809	UPSTREAM CG31769 INTERGENIC	TF binding site mE1_TFBS_cad
3R	5847114	3R_5847114_SNP [dm3] 3R_10021392_SNP [dm6]	G	A	3.197e^-4	0.809	UTR_5_PRIME Mical INTRON Mical	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24349451	3R_24349451_SNP [dm3] 3R_28523729_SNP [dm6]	G	A	3.209e^-4	0.809	INTRON Ppn	TF binding site mE1_TFBS_chinmo
3R	3568107	3R_3568107_SNP [dm3] 3R_7742385_SNP [dm6]	C	G	3.212e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19454092	3R_19454092_SNP [dm3] 3R_23628370_SNP [dm6]	T	C	3.212e^-4	0.809	INTRON CG31145
X	16071521	X_16071521_DEL [dm3] X_16177488_DEL [dm6]	GG	G	3.223e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_HSA
X	16071530	X_16071530_SNP [dm3] X_16177497_SNP [dm6]	T	G	3.223e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	9446540	3R_9446540_SNP [dm3] 3R_13620818_SNP [dm6]	G	C	3.224e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16071532	X_16071532_SNP [dm3] X_16177499_SNP [dm6]	G	A	3.231e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	12994419	2R_12994419_SNP [dm3] 2R_17106914_SNP [dm6]	A	G	3.237e^-4	0.809	SYNONYMOUS_CODING CG30456	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6995471	3R_6995471_SNP [dm3] 3R_11169749_SNP [dm6]	T	A	3.238e^-4	0.809	SYNONYMOUS_CODING Ugt35b
3R	10370747	3R_10370747_SNP [dm3] 3R_14545025_SNP [dm6]	C	A	3.244e^-4	0.809	INTRON Pde6
2R	13424352	2R_13424352_SNP [dm3] 2R_17536847_SNP [dm6]	C	T	3.253e^-4	0.809	SYNONYMOUS_CODING eIF3-S9 UPSTREAM Patronin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	17443383	2L_17443383_SNP [dm3] 2L_17443383_SNP [dm6]	T	C	3.255e^-4	0.809	INTRON dl	TF binding site BDTNP1_TFBS_dl
2L	11705071	2L_11705071_SNP [dm3] 2L_11705071_SNP [dm6]	T	A	3.259e^-4	0.809	INTERGENIC
3R	18755087	3R_18755087_SNP [dm3] 3R_22929365_SNP [dm6]	C	T	3.259e^-4	0.809	INTRON klg
3R	14236469	3R_14236469_SNP [dm3] 3R_18410747_SNP [dm6]	G	A	3.260e^-4	0.809	SYNONYMOUS_CODING CG10864 UPSTREAM CG31122 INTRON CG31122	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16454713	2R_16454713_SNP [dm3] 2R_20567208_SNP [dm6]	C	T	3.264e^-4	0.809	INTRON qsm
3R	20208507	3R_20208507_SNP [dm3] 3R_24382785_SNP [dm6]	G	A	3.267e^-4	0.809	DOWNSTREAM CG17780 INTERGENIC
3R	14237374	3R_14237374_SNP [dm3] 3R_18411652_SNP [dm6]	G	A	3.271e^-4	0.809	UPSTREAM CG10864 INTRON CG31122	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	8913166	3L_8913166_SNP [dm3] 3L_8920066_SNP [dm6]	A	C	3.280e^-4	0.809	INTRON Tsp66E
3R	9018295	3R_9018295_SNP [dm3] 3R_13192573_SNP [dm6]	G	A	3.290e^-4	0.809	DOWNSTREAM CG8141 INTERGENIC
2R	14175306	2R_14175306_DEL [dm3] 2R_18287801_DEL [dm6]	CGTACTAAATGGGG...	TC	3.293e^-4	0.809	UPSTREAM CG14502 INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad
2L	14681699	2L_14681699_SNP [dm3] 2L_14681699_SNP [dm6]	A	G	3.298e^-4	0.809	INTRON osp
3R	11310268	3R_11310268_INS [dm3] 3R_15484546_INS [dm6]	G	GCAG	3.298e^-4	0.809	UTR_3_PRIME Rh6 DOWNSTREAM Trissin
2R	3887517	2R_3887517_DEL [dm3] 2R_8000012_DEL [dm6]	TGTCACCC	T	3.299e^-4	0.809	DOWNSTREAM CG11191 INTERGENIC
3R	26499544	3R_26499544_SNP [dm3] 3R_30673822_SNP [dm6]	T	A	3.309e^-4	0.809	INTERGENIC
3R	26339437	3R_26339437_SNP [dm3] 3R_30513715_SNP [dm6]	A	T	3.311e^-4	0.809	INTRON CG31524
2R	18436639	2R_18436639_SNP [dm3] 2R_22549134_SNP [dm6]	A	C	3.311e^-4	0.809	UPSTREAM CG6018 INTRON px
2L	22167022	2L_22167022_SNP [dm3] 2L_22167022_SNP [dm6]	A	T	3.314e^-4	0.809	DOWNSTREAM CG42748 INTRON Clamp
3L	3741422	3L_3741422_SNP [dm3] 3L_3741422_SNP [dm6]	T	G	3.317e^-4	0.809	INTRON CG32264	TF binding site mE1_TFBS_inv
3R	8044383	3R_8044383_SNP [dm3] 3R_12218661_SNP [dm6]	A	C	3.322e^-4	0.809	NON_SYNONYMOUS_CODING CG4848 SPLICE_SITE_REGION CG4848	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26339782	3R_26339782_SNP [dm3] 3R_30514060_SNP [dm6]	C	T	3.326e^-4	0.809	SYNONYMOUS_CODING CG31524 UPSTREAM CG9698
2R	20503496	2R_20503496_SNP [dm3] 2R_24615973_SNP [dm6]	A	C	3.339e^-4	0.809	UTR_3_PRIME CG13594 UPSTREAM CG4741
3L	12864266	3L_12864266_SNP [dm3] 3L_12871166_SNP [dm6]	C	G	3.339e^-4	0.809	INTERGENIC
3L	16462035	3L_16462035_SNP [dm3] 3L_16468935_SNP [dm6]	T	C	3.341e^-4	0.809	INTRON CG33158	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	22444096	3R_22444096_SNP [dm3] 3R_26618374_SNP [dm6]	A	T	3.341e^-4	0.809	UPSTREAM TwdlM INTERGENIC
X	18040937	X_18040937_SNP [dm3] X_18146904_SNP [dm6]	C	A	3.349e^-4	0.809	INTERGENIC
2L	9591667	2L_9591667_SNP [dm3] 2L_9591667_SNP [dm6]	T	A	3.349e^-4	0.809	UTR_3_PRIME CG3841	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
3L	14458509	3L_14458509_SNP [dm3] 3L_14465409_SNP [dm6]	T	C	3.350e^-4	0.809	INTRON bbg
2L	10796467	2L_10796467_SNP [dm3] 2L_10796467_SNP [dm6]	T	A	3.353e^-4	0.809	INTRON CG31869
3L	7095762	3L_7095762_SNP [dm3] 3L_7102662_SNP [dm6]	G	A	3.359e^-4	0.809	INTRON form3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3430709	3L_3430709_SNP [dm3] 3L_3430709_SNP [dm6]	C	T	3.365e^-4	0.809	INTRON eIF5B
3R	25212437	3R_25212437_SNP [dm3] 3R_29386715_SNP [dm6]	C	T	3.368e^-4	0.809	INTRON Ptp99A	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
X	19159670	X_19159670_SNP [dm3] X_19265637_SNP [dm6]	C	G	3.369e^-4	0.809	INTRON Vav	TF binding site mE1_TFBS_HSA
3R	17915950	3R_17915950_SNP [dm3] 3R_22090228_SNP [dm6]	A	G	3.369e^-4	0.809	INTRON CG5778
X	13690217	X_13690217_SNP [dm3] X_13796184_SNP [dm6]	T	C	3.371e^-4	0.809	DOWNSTREAM CG10996 INTRON inaE
2R	7392205	2R_7392205_SNP [dm3] 2R_11504700_SNP [dm6]	T	A	3.372e^-4	0.809	INTRON inv
X	12783034	X_12783034_SNP [dm3] X_12889001_SNP [dm6]	C	G	3.373e^-4	0.809	INTRON Pde9
3L	22029742	3L_22029742_SNP [dm3] 3L_22036642_SNP [dm6]	C	T	3.375e^-4	0.809	INTRON Oct-TyrR
3R	7958406	3R_7958406_SNP [dm3] 3R_12132684_SNP [dm6]	G	C	3.377e^-4	0.809	INTERGENIC
3L	5668536	3L_5668536_SNP [dm3] 3L_5675436_SNP [dm6]	T	C	3.378e^-4	0.809	INTRON sif
3R	8928451	3R_8928451_SNP [dm3] 3R_13102729_SNP [dm6]	C	G	3.380e^-4	0.809	INTRON timeout
3L	7838626	3L_7838626_SNP [dm3] 3L_7845526_SNP [dm6]	C	A	3.388e^-4	0.809	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
3R	5473215	3R_5473215_SNP [dm3] 3R_9647493_SNP [dm6]	T	C	3.393e^-4	0.809	INTRON Dh44
3L	4514784	3L_4514784_SNP [dm3] 3L_4514784_SNP [dm6]	C	G	3.394e^-4	0.809	NON_SYNONYMOUS_CODING Tie	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	24234632	3L_24234632_SNP [dm3] 3L_24241532_SNP [dm6]	A	G	3.395e^-4	0.809	INTRON Snap25
3L	16264867	3L_16264867_SNP [dm3] 3L_16271767_SNP [dm6]	C	A	3.397e^-4	0.809	UTR_3_PRIME CG13067 UPSTREAM CG34248	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2078240	3L_2078240_SNP [dm3] 3L_2078240_SNP [dm6]	G	A	3.398e^-4	0.809	INTRON sls
2L	18605687	2L_18605687_SNP [dm3] 2L_18605687_SNP [dm6]	G	C	3.399e^-4	0.809	UPSTREAM CG31789 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4958622	3L_4958622_SNP [dm3] 3L_4958622_SNP [dm6]	T	C	3.403e^-4	0.809	INTRON Con
3L	4958675	3L_4958675_SNP [dm3] 3L_4958675_SNP [dm6]	T	C	3.403e^-4	0.809	INTRON Con
X	2073753	X_2073753_SNP [dm3] X_2179720_SNP [dm6]	G	A	3.404e^-4	0.809	SYNONYMOUS_CODING Cyp4ae1 DOWNSTREAM Cyp4d2 EXON CR44690	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	6290751	2R_6290751_SNP [dm3] 2R_10403246_SNP [dm6]	T	C	3.406e^-4	0.809	INTRON CG42732
3R	15996432	3R_15996432_SNP [dm3] 3R_20170710_SNP [dm6]	T	C	3.406e^-4	0.809	INTRON CG5023
X	13349426	X_13349426_SNP [dm3] X_13455393_SNP [dm6]	G	A	3.416e^-4	0.809	INTRON Neto
2L	2248949	2L_2248949_SNP [dm3] 2L_2248949_SNP [dm6]	T	G	3.417e^-4	0.809	INTERGENIC
2R	11676695	2R_11676695_SNP [dm3] 2R_15789190_SNP [dm6]	G	T	3.429e^-4	0.809	INTRON Zasp52
2L	11701972	2L_11701972_SNP [dm3] 2L_11701972_SNP [dm6]	G	A	3.430e^-4	0.809	INTERGENIC
2L	4965854	2L_4965854_SNP [dm3] 2L_4965854_SNP [dm6]	T	A	3.431e^-4	0.809	UPSTREAM CR43824 DOWNSTREAM Trip1 & 1 other INTRON CG34125	TF binding site mE1_TFBS_cad
3L	15864893	3L_15864893_SNP [dm3] 3L_15871793_SNP [dm6]	T	G	3.432e^-4	0.809	INTRON pHCl
X	2352458	X_2352458_SNP [dm3] X_2458425_SNP [dm6]	C	G	3.437e^-4	0.809	INTRON boi
3R	20007902	3R_20007902_SNP [dm3] 3R_24182180_SNP [dm6]	C	G	3.443e^-4	0.809	DOWNSTREAM CG13606 INTRON CG13606
3L	12172285	3L_12172285_SNP [dm3] 3L_12179185_SNP [dm6]	G	C	3.455e^-4	0.809	UPSTREAM CAH2 INTRON CAH2
3R	14235051	3R_14235051_SNP [dm3] 3R_18409329_SNP [dm6]	T	C	3.463e^-4	0.809	SPLICE_SITE_REGION CG31122 DOWNSTREAM CG10864 INTRON CG31122
3L	18642258	3L_18642258_SNP [dm3] 3L_18649158_SNP [dm6]	A	G	3.464e^-4	0.809	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_twi
3R	9017226	3R_9017226_SNP [dm3] 3R_13191504_SNP [dm6]	T	G	3.466e^-4	0.809	UPSTREAM CG8141 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	8930563	3R_8930563_SNP [dm3] 3R_13104841_SNP [dm6]	T	A	3.467e^-4	0.809	INTRON timeout
3R	21543928	3R_21543928_SNP [dm3] 3R_25718206_SNP [dm6]	T	G	3.475e^-4	0.809	INTRON LpR2
2L	14329332	2L_14329332_SNP [dm3] 2L_14329332_SNP [dm6]	G	T	3.477e^-4	0.809	SYNONYMOUS_CODING ms_2_34Fe	TF binding site mE1_TFBS_cad
2L	17837868	2L_17837868_SNP [dm3] 2L_17837868_SNP [dm6]	C	G	3.478e^-4	0.809	INTRON CadN2
X	7442869	X_7442869_SNP [dm3] X_7548836_SNP [dm6]	G	A	3.479e^-4	0.809	UPSTREAM CG32719 INTERGENIC	TF binding site BDTNP1_TFBS_hb
3L	18559148	3L_18559148_SNP [dm3] 3L_18566048_SNP [dm6]	C	A	3.479e^-4	0.809	INTRON AstC-R1
3R	20927571	3R_20927571_SNP [dm3] 3R_25101849_SNP [dm6]	A	G	3.484e^-4	0.809	UTR_3_PRIME CG33096 & 1 other UPSTREAM CG45095
2L	8930809	2L_8930809_SNP [dm3] 2L_8930809_SNP [dm6]	C	A	3.493e^-4	0.809	INTRON CG34398	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13488653	2R_13488653_SNP [dm3] 2R_17601148_SNP [dm6]	A	G	3.494e^-4	0.809	SYNONYMOUS_CODING lack	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5581305	X_5581305_SNP [dm3] X_5687272_SNP [dm6]	G	A	3.499e^-4	0.809	SYNONYMOUS_CODING CG3160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	16376709	2L_16376709_SNP [dm3] 2L_16376709_SNP [dm6]	G	A	3.502e^-4	0.809	INTERGENIC
3L	520485	3L_520485_SNP [dm3] 3L_520485_SNP [dm6]	C	T	3.511e^-4	0.809	INTRON klar	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	14918089	2L_14918089_SNP [dm3] 2L_14918089_SNP [dm6]	T	C	3.514e^-4	0.809	INTRON CG42313
3L	18129539	3L_18129539_SNP [dm3] 3L_18136439_SNP [dm6]	A	C	3.516e^-4	0.809	UPSTREAM CR44669 INTERGENIC
2L	6106124	2L_6106124_SNP [dm3] 2L_6106124_SNP [dm6]	C	T	3.529e^-4	0.809	INTRON stai
3L	2608899	3L_2608899_SNP [dm3] 3L_2608899_SNP [dm6]	A	T	3.534e^-4	0.809	DOWNSTREAM Pxn INTRON Pxn
X	6061588	X_6061588_SNP [dm3] X_6167555_SNP [dm6]	T	A	3.542e^-4	0.809	INTRON Ca-alpha1T
3R	8519772	3R_8519772_SNP [dm3] 3R_12694050_SNP [dm6]	A	T	3.551e^-4	0.809	UTR_3_PRIME Arp1 DOWNSTREAM CG14391	TF binding site mE1_TFBS_HSA
3R	14235291	3R_14235291_SNP [dm3] 3R_18409569_SNP [dm6]	G	A	3.551e^-4	0.809	SYNONYMOUS_CODING CG31122 DOWNSTREAM CG10864	TF binding site mE1_TFBS_chinmo
X	4769526	X_4769526_SNP [dm3] X_4875493_SNP [dm6]	A	G	3.553e^-4	0.809	UPSTREAM CG12681 INTRON CG42594
2R	12458926	2R_12458926_SNP [dm3] 2R_16571421_SNP [dm6]	C	A	3.553e^-4	0.809	UPSTREAM CG4927 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	12864515	3L_12864515_SNP [dm3] 3L_12871415_SNP [dm6]	C	A	3.565e^-4	0.809	INTERGENIC
X	18354639	X_18354639_SNP [dm3] X_18460606_SNP [dm6]	G	A	3.566e^-4	0.809	UPSTREAM CR43842 & 1 other INTRON CG32547
3L	915948	3L_915948_SNP [dm3] 3L_915948_SNP [dm6]	T	A	3.567e^-4	0.809	INTRON Glut1
2L	14094570	2L_14094570_SNP [dm3] 2L_14094570_SNP [dm6]	C	T	3.573e^-4	0.809	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	2073756	X_2073756_SNP [dm3] X_2179723_SNP [dm6]	C	T	3.576e^-4	0.809	SYNONYMOUS_CODING Cyp4ae1 DOWNSTREAM Cyp4d2 EXON CR44690	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	18446784	3R_18446784_SNP [dm3] 3R_22621062_SNP [dm6]	C	T	3.578e^-4	0.809	SYNONYMOUS_CODING loco	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6767039	2R_6767039_SNP [dm3] 2R_10879534_SNP [dm6]	C	T	3.581e^-4	0.809	SYNONYMOUS_CODING Taf5 UPSTREAM Pex6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	12556189	3L_12556189_SNP [dm3] 3L_12563089_SNP [dm6]	G	C	3.584e^-4	0.809	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	4540067	3R_4540067_SNP [dm3] 3R_8714345_SNP [dm6]	T	G	3.587e^-4	0.809	NON_SYNONYMOUS_CODING CG8112 UTR_3_PRIME Cks85A & 1 other DOWNSTREAM CG8112 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	6874385	3L_6874385_SNP [dm3] 3L_6881285_SNP [dm6]	T	C	3.589e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	13746005	X_13746005_SNP [dm3] X_13851972_SNP [dm6]	C	G	3.596e^-4	0.809	UTR_3_PRIME mamo
3R	5882742	3R_5882742_SNP [dm3] 3R_10057020_SNP [dm6]	C	T	3.627e^-4	0.809	UPSTREAM Npc2d INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26522181	3R_26522181_SNP [dm3] 3R_30696459_SNP [dm6]	A	G	3.632e^-4	0.809	UPSTREAM CG12069 INTRON Pka-C2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13040052	2L_13040052_SNP [dm3] 2L_13040052_SNP [dm6]	G	C	3.633e^-4	0.809	INTRON CG9932
X	6477803	X_6477803_DEL [dm3] X_6583770_DEL [dm6]	ATA	A	3.636e^-4	0.809	UTR_3_PRIME CG34417 INTRON CG34417
3R	8519734	3R_8519734_SNP [dm3] 3R_12694012_SNP [dm6]	T	C	3.642e^-4	0.809	UTR_3_PRIME Arp1 DOWNSTREAM CG14391	TF binding site mE1_TFBS_HSA
2R	13389972	2R_13389972_SNP [dm3] 2R_17502467_SNP [dm6]	T	A	3.648e^-4	0.809	UTR_5_PRIME CG43164 UPSTREAM CG43164	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	2069797	X_2069797_INS [dm3] X_2175764_INS [dm6]	A	AA	3.655e^-4	0.809	UPSTREAM Cyp4d2 & 1 other DOWNSTREAM CR44690 EXON CR45479
3L	6873192	3L_6873192_SNP [dm3] 3L_6880092_SNP [dm6]	T	G	3.656e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10436971	3L_10436971_SNP [dm3] 3L_10443871_SNP [dm6]	A	G	3.668e^-4	0.809	INTERGENIC
3R	15319413	3R_15319413_SNP [dm3] 3R_19493691_SNP [dm6]	T	C	3.673e^-4	0.809	INTRON Dys
2L	9589917	2L_9589917_SNP [dm3] 2L_9589917_SNP [dm6]	C	G	3.683e^-4	0.809	NON_SYNONYMOUS_CODING CG3841	regulatory region REDfly_CRMs
2L	642144	2L_642144_SNP [dm3] 2L_642144_SNP [dm6]	T	C	3.685e^-4	0.809	NON_SYNONYMOUS_CODING ds	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9260710	3R_9260710_SNP [dm3] 3R_13434988_SNP [dm6]	T	A	3.689e^-4	0.809	UPSTREAM yrt INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu
3R	8943566	3R_8943566_SNP [dm3] 3R_13117844_SNP [dm6]	T	A	3.693e^-4	0.809	INTRON timeout
2L	18600609	2L_18600609_SNP [dm3] 2L_18600609_SNP [dm6]	T	C	3.701e^-4	0.809	UTR_3_PRIME CG10413
3L	22601974	3L_22601974_SNP [dm3] 3L_22608874_SNP [dm6]	G	A	3.712e^-4	0.809	INTRON CG14459
3R	15341531	3R_15341531_SNP [dm3] 3R_19515809_SNP [dm6]	A	G	3.712e^-4	0.809	INTRON Dys
3R	4253742	3R_4253742_SNP [dm3] 3R_8428020_SNP [dm6]	T	A	3.714e^-4	0.809	INTRON CG45263
3L	3418916	3L_3418916_SNP [dm3] 3L_3418916_SNP [dm6]	C	T	3.716e^-4	0.809	UPSTREAM sty INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8930760	2L_8930760_SNP [dm3] 2L_8930760_SNP [dm6]	G	A	3.721e^-4	0.809	INTRON CG34398	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21657882	3R_21657882_SNP [dm3] 3R_25832160_SNP [dm6]	C	A	3.725e^-4	0.809	UPSTREAM alpha4GT2 & 1 other INTERGENIC
2R	9629603	2R_9629603_SNP [dm3] 2R_13742098_SNP [dm6]	T	C	3.732e^-4	0.809	INTRON fas
3R	8045333	3R_8045333_SNP [dm3] 3R_12219611_SNP [dm6]	G	C	3.735e^-4	0.809	UTR_5_PRIME CG4848 DOWNSTREAM CG4860	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
X	14219746	X_14219746_SNP [dm3] X_14325713_SNP [dm6]	G	A	3.735e^-4	0.809	INTRON dpr8
3R	15368350	3R_15368350_SNP [dm3] 3R_19542628_SNP [dm6]	A	C	3.745e^-4	0.809	INTRON Dys
3L	19047148	3L_19047148_SNP [dm3] 3L_19054048_SNP [dm6]	T	C	3.749e^-4	0.809	UPSTREAM CG43407 INTERGENIC
3R	8061354	3R_8061354_SNP [dm3] 3R_12235632_SNP [dm6]	G	C	3.758e^-4	0.809	NON_SYNONYMOUS_CODING Cyp313a2 UPSTREAM Cyp313a5
3L	2016415	3L_2016415_SNP [dm3] 3L_2016415_SNP [dm6]	T	C	3.758e^-4	0.809	INTERGENIC
3R	6837391	3R_6837391_SNP [dm3] 3R_11011669_SNP [dm6]	A	G	3.763e^-4	0.809	INTRON CG34114
3L	11893622	3L_11893622_SNP [dm3] 3L_11900522_SNP [dm6]	A	T	3.765e^-4	0.809	DOWNSTREAM CR43624 INTRON CG44837
2L	12235419	2L_12235419_SNP [dm3] 2L_12235419_SNP [dm6]	G	A	3.768e^-4	0.809	INTRON aret
3L	16343226	3L_16343226_SNP [dm3] 3L_16350126_SNP [dm6]	C	T	3.769e^-4	0.809	NON_SYNONYMOUS_CODING CG4925 DOWNSTREAM tRNA:CR32357
2L	6380594	2L_6380594_DEL [dm3] 2L_6380594_DEL [dm6]	GA	G	3.780e^-4	0.809	UPSTREAM CG9507 INTRON CG42368
3L	19153600	3L_19153600_SNP [dm3] 3L_19160500_SNP [dm6]	A	G	3.784e^-4	0.809	INTRON fz2
3R	20795584	3R_20795584_SNP [dm3] 3R_24969862_SNP [dm6]	A	T	3.785e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	22312105	2L_22312105_SNP [dm3] 2L_22312105_SNP [dm6]	A	G	3.787e^-4	0.809	INTRON CG17018
2R	9344031	2R_9344031_SNP [dm3] 2R_13456526_SNP [dm6]	A	T	3.787e^-4	0.809	INTRON arr	TF binding site mE1_TFBS_cad
2L	21713785	2L_21713785_SNP [dm3] 2L_21713785_SNP [dm6]	A	C	3.793e^-4	0.809	INTRON CG31619
2L	12088153	2L_12088153_SNP [dm3] 2L_12088153_SNP [dm6]	C	T	3.799e^-4	0.809	DOWNSTREAM CR44593 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12088156	2L_12088156_SNP [dm3] 2L_12088156_SNP [dm6]	T	A	3.799e^-4	0.809	DOWNSTREAM CR44593 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16010281	X_16010281_SNP [dm3] X_16116248_SNP [dm6]	A	T	3.808e^-4	0.809	INTERGENIC	transposable element FlyBase
2L	14246782	2L_14246782_SNP [dm3] 2L_14246782_SNP [dm6]	G	A	3.814e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10539414	2L_10539414_SNP [dm3] 2L_10539414_SNP [dm6]	G	A	3.816e^-4	0.809	INTERGENIC
3R	8930702	3R_8930702_SNP [dm3] 3R_13104980_SNP [dm6]	C	T	3.816e^-4	0.809	INTRON timeout
2L	17941413	2L_17941413_INS [dm3] 2L_17941413_INS [dm6]	T	TGTAGA	3.818e^-4	0.809	INTERGENIC	transposable element FlyBase
2R	12458859	2R_12458859_SNP [dm3] 2R_16571354_SNP [dm6]	C	G	3.821e^-4	0.809	UPSTREAM CG4927 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	1003101	3L_1003101_DEL [dm3] 3L_1003101_DEL [dm6]	ATGCTCTCCGTTCATTACAG...	A	3.822e^-4	0.809	INTRON trio
3L	6906991	3L_6906991_SNP [dm3] 3L_6913891_SNP [dm6]	A	C	3.825e^-4	0.809	START_GAINED Prat2 UTR_5_PRIME Prat2 INTRON Prat2
2L	14903874	2L_14903874_SNP [dm3] 2L_14903874_SNP [dm6]	T	G	3.827e^-4	0.809	INTERGENIC
3L	2355373	3L_2355373_SNP [dm3] 3L_2355373_SNP [dm6]	G	A	3.830e^-4	0.809	INTERGENIC
2R	9613758	2R_9613758_SNP [dm3] 2R_13726253_SNP [dm6]	C	G	3.836e^-4	0.809	SYNONYMOUS_CODING fas	TF binding site BDTNP1_TFBS_da
3L	10542121	3L_10542121_SNP [dm3] 3L_10549021_SNP [dm6]	T	G	3.840e^-4	0.809	INTRON A2bp1
X	16802978	X_16802978_SNP [dm3] X_16908945_SNP [dm6]	A	T	3.844e^-4	0.809	INTRON CR44754
3R	14237727	3R_14237727_SNP [dm3] 3R_18412005_SNP [dm6]	T	G	3.844e^-4	0.809	UPSTREAM CG10864 INTRON CG31122	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	17962428	2R_17962428_SNP [dm3] 2R_22074923_SNP [dm6]	A	T	3.845e^-4	0.809	INTRON CG2921	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	6874211	3L_6874211_SNP [dm3] 3L_6881111_SNP [dm6]	G	C	3.846e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8928183	3R_8928183_SNP [dm3] 3R_13102461_SNP [dm6]	G	T	3.849e^-4	0.809	INTRON timeout
3L	11991047	3L_11991047_SNP [dm3] 3L_11997947_SNP [dm6]	A	G	3.851e^-4	0.809	NON_SYNONYMOUS_CODING Grip163 DOWNSTREAM Pop2
X	6062202	X_6062202_SNP [dm3] X_6168169_SNP [dm6]	G	C	3.857e^-4	0.809	INTRON Ca-alpha1T
3L	5227261	3L_5227261_SNP [dm3] 3L_5234161_SNP [dm6]	T	C	3.858e^-4	0.809	UPSTREAM CG4669 INTRON shep
2L	8781819	2L_8781819_SNP [dm3] 2L_8781819_SNP [dm6]	T	C	3.864e^-4	0.809	UTR_3_PRIME CG42710 UPSTREAM CG9468
3R	3281894	3R_3281894_SNP [dm3] 3R_7456172_SNP [dm6]	C	T	3.869e^-4	0.809	INTERGENIC
X	17503869	X_17503869_SNP [dm3] X_17609836_SNP [dm6]	T	G	3.869e^-4	0.809	INTERGENIC
3L	23843811	3L_23843811_SNP [dm3] 3L_23850711_SNP [dm6]	C	T	3.874e^-4	0.809	INTRON CG40470
2L	641613	2L_641613_SNP [dm3] 2L_641613_SNP [dm6]	T	G	3.895e^-4	0.809	SYNONYMOUS_CODING ds	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15974254	2R_15974254_SNP [dm3] 2R_20086749_SNP [dm6]	A	G	3.903e^-4	0.809	DOWNSTREAM CR44632 INTERGENIC
2L	1348256	2L_1348256_SNP [dm3] 2L_1348256_SNP [dm6]	T	A	3.908e^-4	0.809	INTERGENIC
3L	5880913	3L_5880913_SNP [dm3] 3L_5887813_SNP [dm6]	T	G	3.909e^-4	0.809	INTERGENIC
2L	22733899	2L_22733899_SNP [dm3] 2L_22841167_SNP [dm6]	G	C	3.911e^-4	0.809	INTERGENIC
3R	5765608	3R_5765608_SNP [dm3] 3R_9939886_SNP [dm6]	C	T	3.917e^-4	0.809	INTRON Glut4EF
3R	20615486	3R_20615486_SNP [dm3] 3R_24789764_SNP [dm6]	G	A	3.918e^-4	0.809	SYNONYMOUS_CODING CG13634 INTRON Ets96B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15774550	2R_15774550_SNP [dm3] 2R_19887045_SNP [dm6]	G	T	3.919e^-4	0.809	INTERGENIC
3R	22444097	3R_22444097_SNP [dm3] 3R_26618375_SNP [dm6]	A	T	3.920e^-4	0.809	UPSTREAM TwdlM INTERGENIC
2R	9344013	2R_9344013_SNP [dm3] 2R_13456508_SNP [dm6]	T	A	3.923e^-4	0.809	INTRON arr	TF binding site mE1_TFBS_cad
2R	9344023	2R_9344023_SNP [dm3] 2R_13456518_SNP [dm6]	G	T	3.923e^-4	0.809	INTRON arr	TF binding site mE1_TFBS_cad
2R	9344025	2R_9344025_SNP [dm3] 2R_13456520_SNP [dm6]	T	A	3.923e^-4	0.809	INTRON arr	TF binding site mE1_TFBS_cad
2R	9344028	2R_9344028_SNP [dm3] 2R_13456523_SNP [dm6]	A	T	3.923e^-4	0.809	INTRON arr	TF binding site mE1_TFBS_cad
3L	22538023	3L_22538023_SNP [dm3] 3L_22544923_SNP [dm6]	C	A	3.926e^-4	0.809	INTERGENIC
3R	21477650	3R_21477650_SNP [dm3] 3R_25651928_SNP [dm6]	G	A	3.927e^-4	0.809	DOWNSTREAM mir-92b INTERGENIC
3R	1529485	3R_1529485_SNP [dm3] 3R_5703763_SNP [dm6]	A	T	3.931e^-4	0.809	INTRON plx	TF binding site BDTNP1_TFBS_prd
3R	15340171	3R_15340171_SNP [dm3] 3R_19514449_SNP [dm6]	G	A	3.931e^-4	0.809	INTRON Dys
2L	5961822	2L_5961822_SNP [dm3] 2L_5961822_SNP [dm6]	A	G	3.935e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7952641	3L_7952641_SNP [dm3] 3L_7959541_SNP [dm6]	A	T	3.936e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9591429	2L_9591429_SNP [dm3] 2L_9591429_SNP [dm6]	C	T	3.958e^-4	0.809	NON_SYNONYMOUS_CODING CG3841	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1905721	2R_1905721_INS [dm3] 2R_6018216_INS [dm6]	T	TGTAAGCTT	3.969e^-4	0.809	INTRON Pngl	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
X	17194823	X_17194823_INS [dm3] X_17300790_INS [dm6]	A	AA	3.970e^-4	0.809	UPSTREAM Fim INTRON CG5445 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	13425673	2L_13425673_SNP [dm3] 2L_13425673_SNP [dm6]	A	C	3.973e^-4	0.809	INTRON CG42784
3L	15751484	3L_15751484_SNP [dm3] 3L_15758384_SNP [dm6]	T	A	3.975e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	7313077	3L_7313077_INS [dm3] 3L_7319977_INS [dm6]	T	TACTTTGTTTTTTAAGT...	3.979e^-4	0.809	UPSTREAM CG8607 INTERGENIC
3R	19078625	3R_19078625_SNP [dm3] 3R_23252903_SNP [dm6]	T	G	3.988e^-4	0.809	SYNONYMOUS_CODING EloA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	11450992	2L_11450992_SNP [dm3] 2L_11450992_SNP [dm6]	A	G	4.002e^-4	0.809	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	1562912	2L_1562912_SNP [dm3] 2L_1562912_SNP [dm6]	G	A	4.004e^-4	0.809	INTRON haf	TF binding site mE1_TFBS_inv
3L	17375378	3L_17375378_SNP [dm3] 3L_17382278_SNP [dm6]	A	T	4.006e^-4	0.809	NON_SYNONYMOUS_CODING CG13728	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	17443424	2L_17443424_DEL [dm3] 2L_17443424_DEL [dm6]	GTTG	G	4.013e^-4	0.809	INTRON dl
3R	21897013	3R_21897013_SNP [dm3] 3R_26071291_SNP [dm6]	A	T	4.017e^-4	0.809	INTRON CR44950
2L	11676310	2L_11676310_SNP [dm3] 2L_11676310_SNP [dm6]	T	G	4.020e^-4	0.809	INTERGENIC
X	14908851	X_14908851_SNP [dm3] X_15014818_SNP [dm6]	A	G	4.021e^-4	0.809	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
3R	16498263	3R_16498263_SNP [dm3] 3R_20672541_SNP [dm6]	G	A	4.028e^-4	0.809	UTR_3_PRIME Cpr92F
3L	776012	3L_776012_SNP [dm3] 3L_776012_SNP [dm6]	G	A	4.038e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2L	9926663	2L_9926663_SNP [dm3] 2L_9926663_SNP [dm6]	G	C	4.040e^-4	0.809	SYNONYMOUS_CODING CG42366	TF binding site mE1_TFBS_cad
3L	452357	3L_452357_SNP [dm3] 3L_452357_SNP [dm6]	C	T	4.046e^-4	0.809	INTRON klar
3R	8977137	3R_8977137_DEL [dm3] 3R_13151415_DEL [dm6]	AGTGTGTAATATTTTTCGCT...	GTTCG	4.047e^-4	0.809	INTRON timeout & 2 others
3L	2251776	3L_2251776_SNP [dm3] 3L_2251776_SNP [dm6]	C	T	4.047e^-4	0.809	SYNONYMOUS_CODING CG32305 DOWNSTREAM CG1275	TF binding site mE1_TFBS_cad
2R	13456129	2R_13456129_SNP [dm3] 2R_17568624_SNP [dm6]	T	G	4.049e^-4	0.809	UPSTREAM POSH & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	8734246	3R_8734246_SNP [dm3] 3R_12908524_SNP [dm6]	C	T	4.054e^-4	0.809	INTERGENIC
3R	25125916	3R_25125916_SNP [dm3] 3R_29300194_SNP [dm6]	C	G	4.057e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	15974340	2R_15974340_SNP [dm3] 2R_20086835_SNP [dm6]	T	G	4.063e^-4	0.809	DOWNSTREAM CR44632 INTERGENIC
3L	2651570	3L_2651570_SNP [dm3] 3L_2651570_SNP [dm6]	T	A	4.067e^-4	0.809	SYNONYMOUS_CODING Aats-pro UPSTREAM Snup & 1 other
2R	8149528	2R_8149528_SNP [dm3] 2R_12262023_SNP [dm6]	C	T	4.072e^-4	0.809	INTRON Cam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3L	12570004	3L_12570004_SNP [dm3] 3L_12576904_SNP [dm6]	C	T	4.072e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19081545	2R_19081545_SNP [dm3] 2R_23194022_SNP [dm6]	C	T	4.077e^-4	0.809	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9441874	2R_9441874_SNP [dm3] 2R_13554369_SNP [dm6]	C	T	4.082e^-4	0.809	INTRON Roe1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14095136	2L_14095136_SNP [dm3] 2L_14095136_SNP [dm6]	T	C	4.084e^-4	0.809	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	8935454	3R_8935454_SNP [dm3] 3R_13109732_SNP [dm6]	A	T	4.087e^-4	0.809	INTRON timeout
2L	2766575	2L_2766575_SNP [dm3] 2L_2766575_SNP [dm6]	G	A	4.092e^-4	0.809	SYNONYMOUS_CODING aph-1 UPSTREAM CG3077 DOWNSTREAM Taf10b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	6022970	3L_6022970_SNP [dm3] 3L_6029870_SNP [dm6]	C	T	4.093e^-4	0.809	INTERGENIC
3R	26339886	3R_26339886_SNP [dm3] 3R_30514164_SNP [dm6]	A	T	4.102e^-4	0.809	NON_SYNONYMOUS_CODING CG31524 UPSTREAM CG9698
3L	6879017	3L_6879017_SNP [dm3] 3L_6885917_SNP [dm6]	A	T	4.109e^-4	0.809	INTERGENIC
3L	5227381	3L_5227381_SNP [dm3] 3L_5234281_SNP [dm6]	T	G	4.114e^-4	0.809	UPSTREAM CG4669 INTRON shep
3L	7753309	3L_7753309_INS [dm3] 3L_7760209_INS [dm6]	T	TAT	4.114e^-4	0.809	UPSTREAM Hn INTERGENIC
2L	6380557	2L_6380557_SNP [dm3] 2L_6380557_SNP [dm6]	C	T	4.114e^-4	0.809	UPSTREAM CG9507 INTRON CG42368
2L	12117415	2L_12117415_SNP [dm3] 2L_12117415_SNP [dm6]	C	A	4.115e^-4	0.809	INTRON CG17211
2R	16178623	2R_16178623_SNP [dm3] 2R_20291118_SNP [dm6]	G	T	4.137e^-4	0.809	DOWNSTREAM CkIIbeta2 INTRON Cpr56F
2L	14681736	2L_14681736_SNP [dm3] 2L_14681736_SNP [dm6]	T	G	4.141e^-4	0.809	INTRON osp
3L	19665209	3L_19665209_DEL [dm3] 3L_19672109_DEL [dm6]	CTGACAGCAA	T	4.143e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	14515846	2L_14515846_SNP [dm3] 2L_14515846_SNP [dm6]	G	T	4.146e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_Ubx
2R	17717458	2R_17717458_SNP [dm3] 2R_21829953_SNP [dm6]	C	T	4.148e^-4	0.809	SYNONYMOUS_CODING CG13492
3L	3976345	3L_3976345_SNP [dm3] 3L_3976345_SNP [dm6]	C	A	4.149e^-4	0.809	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24190676	3R_24190676_SNP [dm3] 3R_28364954_SNP [dm6]	G	A	4.150e^-4	0.809	INTERGENIC
3R	18969214	3R_18969214_SNP [dm3] 3R_23143492_SNP [dm6]	A	G	4.150e^-4	0.809	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	18129568	3L_18129568_SNP [dm3] 3L_18136468_SNP [dm6]	A	G	4.164e^-4	0.809	UPSTREAM CR44669 INTERGENIC
3L	13933960	3L_13933960_SNP [dm3] 3L_13940860_SNP [dm6]	C	T	4.165e^-4	0.809	UTR_5_PRIME CG32137 INTRON CG32137	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	6987352	3R_6987352_SNP [dm3] 3R_11161630_SNP [dm6]	A	T	4.168e^-4	0.809	SYNONYMOUS_CODING CG4757	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6987358	3R_6987358_SNP [dm3] 3R_11161636_SNP [dm6]	G	C	4.168e^-4	0.809	SYNONYMOUS_CODING CG4757	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21897008	3R_21897008_SNP [dm3] 3R_26071286_SNP [dm6]	G	A	4.169e^-4	0.809	INTRON CR44950
3L	14674586	3L_14674586_SNP [dm3] 3L_14681486_SNP [dm6]	A	T	4.176e^-4	0.809	INTRON ome
3L	1059533	3L_1059533_SNP [dm3] 3L_1059533_SNP [dm6]	T	G	4.179e^-4	0.809	INTRON bab1
3L	12483273	3L_12483273_SNP [dm3] 3L_12490173_SNP [dm6]	T	C	4.180e^-4	0.809	UTR_5_PRIME CG10660 UPSTREAM CR45681 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18539488	3L_18539488_SNP [dm3] 3L_18546388_SNP [dm6]	C	G	4.186e^-4	0.809	INTERGENIC
2L	7013161	2L_7013161_SNP [dm3] 2L_7013161_SNP [dm6]	A	T	4.205e^-4	0.809	UPSTREAM CG43322 DOWNSTREAM CG43321 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7013168	2L_7013168_SNP [dm3] 2L_7013168_SNP [dm6]	G	T	4.205e^-4	0.809	UPSTREAM CG43322 DOWNSTREAM CG43321 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	5921347	X_5921347_SNP [dm3] X_6027314_SNP [dm6]	C	G	4.206e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	18804346	3L_18804346_SNP [dm3] 3L_18811246_SNP [dm6]	C	T	4.213e^-4	0.809	INTRON CG14073	TF binding site mE1_TFBS_kn
2L	17391422	2L_17391422_SNP [dm3] 2L_17391422_SNP [dm6]	G	T	4.224e^-4	0.809	INTRON CLIP-190
2R	16577749	2R_16577749_SNP [dm3] 2R_20690244_SNP [dm6]	C	G	4.232e^-4	0.809	INTERGENIC
X	18207910	X_18207910_SNP [dm3] X_18313877_SNP [dm6]	C	T	4.234e^-4	0.809	DOWNSTREAM CG6023 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2L	14106408	2L_14106408_SNP [dm3] 2L_14106408_SNP [dm6]	T	C	4.244e^-4	0.809	SYNONYMOUS_CODING CG16879
2R	13399609	2R_13399609_SNP [dm3] 2R_17512104_SNP [dm6]	T	C	4.245e^-4	0.809	UPSTREAM CG4847 DOWNSTREAM CG34193 INTRON CG4847	TF binding site mE1_TFBS_cad
3R	22786915	3R_22786915_SNP [dm3] 3R_26961193_SNP [dm6]	T	C	4.245e^-4	0.809	UTR_3_PRIME Tsp97E DOWNSTREAM Tsp97E
X	20108592	X_20108592_SNP [dm3] X_20237518_SNP [dm6]	T	A	4.247e^-4	0.809	DOWNSTREAM CR45465 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18131278	2L_18131278_INS [dm3] 2L_18131278_INS [dm6]	A	AGCA	4.257e^-4	0.809	CODON_INSERTION kel UTR_3_PRIME kel	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26174550	3R_26174550_SNP [dm3] 3R_30348828_SNP [dm6]	A	T	4.260e^-4	0.809	INTRON hdc
2L	9594539	2L_9594539_SNP [dm3] 2L_9594539_SNP [dm6]	G	A	4.263e^-4	0.809	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
2L	14496178	2L_14496178_DEL [dm3] 2L_14496178_DEL [dm6]	TAATAA	T	4.264e^-4	0.809	DOWNSTREAM tRNA:P:35Bd & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
X	18274074	X_18274074_SNP [dm3] X_18380041_SNP [dm6]	A	G	4.269e^-4	0.809	UPSTREAM CG6179 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
X	9412556	X_9412556_SNP [dm3] X_9518523_SNP [dm6]	A	T	4.284e^-4	0.809	INTRON CG32700	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13430725	2R_13430725_SNP [dm3] 2R_17543220_SNP [dm6]	C	A	4.284e^-4	0.809	SYNONYMOUS_CODING CG43370 UPSTREAM CG34194	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3284430	2L_3284430_SNP [dm3] 2L_3284430_SNP [dm6]	T	C	4.285e^-4	0.809	INTERGENIC
3L	3398009	3L_3398009_SNP [dm3] 3L_3398009_SNP [dm6]	G	A	4.285e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	4627371	2R_4627371_SNP [dm3] 2R_8739866_SNP [dm6]	A	C	4.297e^-4	0.809	INTRON CG8740	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	8417630	3L_8417630_SNP [dm3] 3L_8424530_SNP [dm6]	C	T	4.300e^-4	0.809	UPSTREAM Cbl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	18648562	2R_18648562_SNP [dm3] 2R_22761057_SNP [dm6]	A	G	4.311e^-4	0.809	INTRON CG42260
3L	14470576	3L_14470576_SNP [dm3] 3L_14477476_SNP [dm6]	T	A	4.312e^-4	0.809	UPSTREAM bbg INTRON bbg	TF binding site mE1_TFBS_Trl
2L	14094575	2L_14094575_SNP [dm3] 2L_14094575_SNP [dm6]	A	T	4.315e^-4	0.809	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	20636604	3R_20636604_SNP [dm3] 3R_24810882_SNP [dm6]	G	A	4.316e^-4	0.809	INTRON CG5807
3L	6496640	3L_6496640_SNP [dm3] 3L_6503540_SNP [dm6]	T	G	4.320e^-4	0.809	INTRON sfl	TF binding site BDTNP1_TFBS_dl
3L	1582522	3L_1582522_INS [dm3] 3L_1582522_INS [dm6]	T	TATTCTCGATCT...	4.331e^-4	0.809	INTRON CG13917	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	14448301	3R_14448301_SNP [dm3] 3R_18622579_SNP [dm6]	G	A	4.340e^-4	0.809	INTRON qin	TF binding site mE1_TFBS_inv
3R	21083465	3R_21083465_INS [dm3] 3R_25257743_INS [dm6]	A	ACAA	4.344e^-4	0.809		TF binding site mE1_TFBS_cad
3R	26339785	3R_26339785_SNP [dm3] 3R_30514063_SNP [dm6]	G	T	4.361e^-4	0.809	NON_SYNONYMOUS_CODING CG31524 UPSTREAM CG9698
X	12994424	X_12994424_SNP [dm3] X_13100391_SNP [dm6]	A	G	4.364e^-4	0.809	INTRON CG43313

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.214e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.02015
In_3R_P	0.01631

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	4.8985	0.0269
In_3R_P	10.5943	0.005

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2202 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	7843258	2R_7843258_SNP [dm3] 2R_11955753_SNP [dm6]	T	G	2.749e^-7	0.516	INTRON CG13188
X	8671824	X_8671824_SNP [dm3] X_8777791_SNP [dm6]	T	G	2.349e^-6	0.658	INTRON Lim1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	9926663	2L_9926663_SNP [dm3] 2L_9926663_SNP [dm6]	G	C	3.324e^-6	0.658	SYNONYMOUS_CODING CG42366	TF binding site mE1_TFBS_cad
2L	7774699	2L_7774699_SNP [dm3] 2L_7774699_SNP [dm6]	C	G	4.913e^-6	0.658	UTR_3_PRIME CG7191
3R	7000716	3R_7000716_SNP [dm3] 3R_11174994_SNP [dm6]	C	A	4.916e^-6	0.658	UPSTREAM Ugt86Dh INTRON Ugt86Dj
2L	9186931	2L_9186931_SNP [dm3] 2L_9186931_SNP [dm6]	T	G	6.071e^-6	0.658	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9563013	3L_9563013_SNP [dm3] 3L_9569913_SNP [dm6]	G	A	6.117e^-6	0.658	INTRON CG42673
2L	11205704	2L_11205704_SNP [dm3] 2L_11205704_SNP [dm6]	G	A	6.787e^-6	0.658	EXON CR43859
2L	14500933	2L_14500933_SNP [dm3] 2L_14500933_SNP [dm6]	C	G	6.994e^-6	0.658	INTERGENIC	silencer mE1_HDAC_PRE
3R	7000748	3R_7000748_SNP [dm3] 3R_11175026_SNP [dm6]	A	T	7.362e^-6	0.658	UPSTREAM Ugt86Dh INTRON Ugt86Dj
2L	17837868	2L_17837868_SNP [dm3] 2L_17837868_SNP [dm6]	C	G	7.797e^-6	0.658	INTRON CadN2
3L	3430842	3L_3430842_SNP [dm3] 3L_3430842_SNP [dm6]	A	G	8.253e^-6	0.658	INTRON eIF5B
2L	8169126	2L_8169126_SNP [dm3] 2L_8169126_SNP [dm6]	A	G	8.300e^-6	0.658	INTRON Piezo
X	13122552	X_13122552_SNP [dm3] X_13228519_SNP [dm6]	C	T	8.948e^-6	0.658	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14460185	3R_14460185_SNP [dm3] 3R_18634463_SNP [dm6]	C	G	9.513e^-6	0.658	INTRON qin & 1 other
3R	14236115	3R_14236115_SNP [dm3] 3R_18410393_SNP [dm6]	C	T	9.684e^-6	0.658	SYNONYMOUS_CODING CG10864 UPSTREAM CG31122 INTRON CG31122	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16876049	3L_16876049_SNP [dm3] 3L_16882949_SNP [dm6]	A	G	1.003e^-5	0.658	INTRON Lmpt
2L	18178712	2L_18178712_SNP [dm3] 2L_18178712_SNP [dm6]	A	C	1.007e^-5	0.658	INTRON CG42750
2L	8781819	2L_8781819_SNP [dm3] 2L_8781819_SNP [dm6]	T	C	1.013e^-5	0.658	UTR_3_PRIME CG42710 UPSTREAM CG9468
3R	15363285	3R_15363285_SNP [dm3] 3R_19537563_SNP [dm6]	C	G	1.041e^-5	0.658	INTRON Dys
2R	11663134	2R_11663134_SNP [dm3] 2R_15775629_SNP [dm6]	T	A	1.044e^-5	0.658	INTRON Zasp52	TF binding site mE1_TFBS_chinmo
3L	6876359	3L_6876359_SNP [dm3] 3L_6883259_SNP [dm6]	C	G	1.089e^-5	0.658	DOWNSTREAM CR45416 INTERGENIC
3R	6995450	3R_6995450_SNP [dm3] 3R_11169728_SNP [dm6]	C	T	1.097e^-5	0.658	SYNONYMOUS_CODING Ugt35b
3R	8939333	3R_8939333_SNP [dm3] 3R_13113611_SNP [dm6]	A	T	1.127e^-5	0.658	INTRON timeout
2R	11663131	2R_11663131_SNP [dm3] 2R_15775626_SNP [dm6]	T	A	1.246e^-5	0.658	INTRON Zasp52	TF binding site mE1_TFBS_chinmo
3R	15349165	3R_15349165_SNP [dm3] 3R_19523443_SNP [dm6]	T	A	1.264e^-5	0.658	INTRON Dys
3R	8940399	3R_8940399_SNP [dm3] 3R_13114677_SNP [dm6]	T	C	1.286e^-5	0.658	INTRON timeout
3L	7109363	3L_7109363_SNP [dm3] 3L_7116263_SNP [dm6]	G	A	1.322e^-5	0.658	INTRON form3
3L	6876454	3L_6876454_SNP [dm3] 3L_6883354_SNP [dm6]	A	G	1.392e^-5	0.658	EXON CR45416
X	18439213	X_18439213_SNP [dm3] X_18545180_SNP [dm6]	A	G	1.443e^-5	0.658	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6362886	2L_6362886_SNP [dm3] 2L_6362886_SNP [dm6]	A	C	1.519e^-5	0.658	INTERGENIC
3L	17723731	3L_17723731_SNP [dm3] 3L_17730631_SNP [dm6]	A	T	1.536e^-5	0.658	INTRON Ccn
2L	8781831	2L_8781831_SNP [dm3] 2L_8781831_SNP [dm6]	G	C	1.551e^-5	0.658	UTR_3_PRIME CG42710 UPSTREAM CG9468
3R	8967667	3R_8967667_SNP [dm3] 3R_13141945_SNP [dm6]	A	G	1.556e^-5	0.658	INTRON timeout & 2 others
3R	7006095	3R_7006095_DEL [dm3] 3R_11180373_DEL [dm6]	AGAGGAC	T	1.589e^-5	0.658	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19905255	3R_19905255_SNP [dm3] 3R_24079533_SNP [dm6]	A	C	1.654e^-5	0.658	INTRON 4EHP
2R	11662923	2R_11662923_SNP [dm3] 2R_15775418_SNP [dm6]	G	A	1.671e^-5	0.658	SYNONYMOUS_CODING Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23605840	3R_23605840_SNP [dm3] 3R_27780118_SNP [dm6]	T	G	1.700e^-5	0.658	INTRON CG34353
3R	7032434	3R_7032434_SNP [dm3] 3R_11206712_SNP [dm6]	G	A	1.734e^-5	0.658	INTRON cu
3R	7032497	3R_7032497_SNP [dm3] 3R_11206775_SNP [dm6]	T	A	1.798e^-5	0.658	INTRON cu
3R	8944428	3R_8944428_SNP [dm3] 3R_13118706_SNP [dm6]	T	G	1.818e^-5	0.658	INTRON timeout
3L	3806465	3L_3806465_SNP [dm3] 3L_3806465_SNP [dm6]	T	A	1.843e^-5	0.658	UPSTREAM IntS10 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	7032485	3R_7032485_SNP [dm3] 3R_11206763_SNP [dm6]	T	C	1.901e^-5	0.658	INTRON cu
3L	17723778	3L_17723778_DEL [dm3] 3L_17730678_DEL [dm6]	GAGGAAA	G	1.919e^-5	0.658	INTRON Ccn
3L	17723790	3L_17723790_SNP [dm3] 3L_17730690_SNP [dm6]	C	A	1.919e^-5	0.658	INTRON Ccn
3L	10209516	3L_10209516_SNP [dm3] 3L_10216416_SNP [dm6]	A	G	1.981e^-5	0.658	SYNONYMOUS_CODING CG8065
3R	7035761	3R_7035761_SNP [dm3] 3R_11210039_SNP [dm6]	T	G	1.987e^-5	0.658	UPSTREAM Tctp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	18436639	2R_18436639_SNP [dm3] 2R_22549134_SNP [dm6]	A	C	2.003e^-5	0.658	UPSTREAM CG6018 INTRON px
3R	11631769	3R_11631769_SNP [dm3] 3R_15806047_SNP [dm6]	T	C	2.085e^-5	0.658	INTRON alpha-Man-IIb
3L	22533946	3L_22533946_SNP [dm3] 3L_22540846_SNP [dm6]	G	T	2.090e^-5	0.658	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6876378	3L_6876378_DEL [dm3] 3L_6883278_DEL [dm6]	TT	T	2.113e^-5	0.658	DOWNSTREAM CR45416 INTERGENIC
3R	7596517	3R_7596517_INS [dm3] 3R_11770795_INS [dm6]	A	AA	2.150e^-5	0.658	INTRON l_3_neo38	TF binding site BDTNP1_TFBS_dl
3R	8951235	3R_8951235_SNP [dm3] 3R_13125513_SNP [dm6]	C	T	2.201e^-5	0.658	UTR_3_PRIME 2mit DOWNSTREAM 2mit INTRON timeout
2R	16178623	2R_16178623_SNP [dm3] 2R_20291118_SNP [dm6]	G	T	2.212e^-5	0.658	DOWNSTREAM CkIIbeta2 INTRON Cpr56F
3R	7033253	3R_7033253_SNP [dm3] 3R_11207531_SNP [dm6]	T	C	2.364e^-5	0.658	INTRON cu
3R	6996105	3R_6996105_SNP [dm3] 3R_11170383_SNP [dm6]	C	A	2.364e^-5	0.658	UPSTREAM Ugt35b DOWNSTREAM Ugt35a INTERGENIC
3R	10479369	3R_10479369_SNP [dm3] 3R_14653647_SNP [dm6]	T	A	2.412e^-5	0.658	INTRON l_3_L1231	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18559148	3L_18559148_SNP [dm3] 3L_18566048_SNP [dm6]	C	A	2.431e^-5	0.658	INTRON AstC-R1
3R	7040338	3R_7040338_SNP [dm3] 3R_11214616_SNP [dm6]	T	C	2.444e^-5	0.658	UPSTREAM ZnT86D DOWNSTREAM RpS25 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
3R	8939969	3R_8939969_SNP [dm3] 3R_13114247_SNP [dm6]	A	G	2.465e^-5	0.658	SPLICE_SITE_REGION timeout INTRON timeout
2R	5114750	2R_5114750_SNP [dm3] 2R_9227245_SNP [dm6]	C	G	2.572e^-5	0.658	DOWNSTREAM hig INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13122387	X_13122387_SNP [dm3] X_13228354_SNP [dm6]	A	C	2.574e^-5	0.658	INTRON mew	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21083395	3R_21083395_SNP [dm3] 3R_25257673_SNP [dm6]	C	A	2.597e^-5	0.658	NON_SYNONYMOUS_CODING Nup358	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	2302364	X_2302364_SNP [dm3] X_2408331_SNP [dm6]	A	G	2.602e^-5	0.658	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	15349166	3R_15349166_SNP [dm3] 3R_19523444_SNP [dm6]	C	A	2.609e^-5	0.658	INTRON Dys
3L	16876018	3L_16876018_SNP [dm3] 3L_16882918_SNP [dm6]	G	A	2.626e^-5	0.658	INTRON Lmpt
3R	7032889	3R_7032889_SNP [dm3] 3R_11207167_SNP [dm6]	G	C	2.634e^-5	0.658	INTRON cu
2R	18436629	2R_18436629_INS [dm3] 2R_22549124_INS [dm6]	C	CCCCACTCC	2.646e^-5	0.658	UPSTREAM CG6018 INTRON px
X	18908739	X_18908739_SNP [dm3] X_19014706_SNP [dm6]	A	C	2.794e^-5	0.658	INTRON CG43759	TF binding site mE1_TFBS_cad
3L	3806491	3L_3806491_SNP [dm3] 3L_3806491_SNP [dm6]	G	A	2.806e^-5	0.658	UPSTREAM IntS10 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3806497	3L_3806497_SNP [dm3] 3L_3806497_SNP [dm6]	T	C	2.806e^-5	0.658	UPSTREAM IntS10 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3806498	3L_3806498_SNP [dm3] 3L_3806498_SNP [dm6]	G	A	2.806e^-5	0.658	UPSTREAM IntS10 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2248949	2L_2248949_SNP [dm3] 2L_2248949_SNP [dm6]	T	G	2.838e^-5	0.658	INTERGENIC
3R	8944546	3R_8944546_SNP [dm3] 3R_13118824_SNP [dm6]	C	T	2.853e^-5	0.658	INTRON timeout
3L	7838629	3L_7838629_SNP [dm3] 3L_7845529_SNP [dm6]	A	T	2.891e^-5	0.658	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
3R	23270644	3R_23270644_SNP [dm3] 3R_27444922_SNP [dm6]	T	G	2.892e^-5	0.658	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7708298	2L_7708298_SNP [dm3] 2L_7708298_SNP [dm6]	G	C	2.909e^-5	0.658	SYNONYMOUS_CODING Tep3 EXON CR44990
3L	9198674	3L_9198674_SNP [dm3] 3L_9205574_SNP [dm6]	T	C	2.911e^-5	0.658	INTRON Slc45-1	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
3R	7033012	3R_7033012_SNP [dm3] 3R_11207290_SNP [dm6]	G	A	2.920e^-5	0.658	INTRON cu
2L	13424275	2L_13424275_SNP [dm3] 2L_13424275_SNP [dm6]	A	G	3.008e^-5	0.658	INTRON CG42784
3R	7023602	3R_7023602_SNP [dm3] 3R_11197880_SNP [dm6]	T	C	3.010e^-5	0.658	DOWNSTREAM CG18577 INTRON cu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6106122	2L_6106122_SNP [dm3] 2L_6106122_SNP [dm6]	G	T	3.056e^-5	0.658	INTRON stai
3R	26020786	3R_26020786_SNP [dm3] 3R_30195064_SNP [dm6]	A	G	3.074e^-5	0.658	NON_SYNONYMOUS_CODING CG15531
2L	4364375	2L_4364375_SNP [dm3] 2L_4364375_SNP [dm6]	T	C	3.087e^-5	0.658	UPSTREAM CR45363 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8671804	X_8671804_SNP [dm3] X_8777771_SNP [dm6]	T	A	3.093e^-5	0.658	INTRON Lim1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	9108253	2R_9108253_INS [dm3] 2R_13220748_INS [dm6]	T	TTT	3.107e^-5	0.658	UPSTREAM CG4646 DOWNSTREAM Fsn INTRON CG17059	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
3R	6432589	3R_6432589_SNP [dm3] 3R_10606867_SNP [dm6]	G	T	3.119e^-5	0.658	INTRON hth	TF binding site mE1_TFBS_HSA
2R	15790582	2R_15790582_SNP [dm3] 2R_19903077_SNP [dm6]	G	C	3.138e^-5	0.658	INTERGENIC
X	13122479	X_13122479_SNP [dm3] X_13228446_SNP [dm6]	G	A	3.162e^-5	0.658	INTRON mew	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18405347	X_18405347_SNP [dm3] X_18511314_SNP [dm6]	A	G	3.182e^-5	0.658	INTRON Ggt-1
2L	14014336	2L_14014336_SNP [dm3] 2L_14014336_SNP [dm6]	C	A	3.221e^-5	0.658	INTRON bgm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	3806488	3L_3806488_SNP [dm3] 3L_3806488_SNP [dm6]	A	G	3.229e^-5	0.658	UPSTREAM IntS10 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	18264198	3R_18264198_SNP [dm3] 3R_22438476_SNP [dm6]	A	G	3.281e^-5	0.662	INTERGENIC
3R	21657851	3R_21657851_SNP [dm3] 3R_25832129_SNP [dm6]	C	T	3.397e^-5	0.665	UPSTREAM alpha4GT2 & 1 other INTERGENIC
X	4563499	X_4563499_SNP [dm3] X_4669466_SNP [dm6]	A	G	3.419e^-5	0.665	INTRON rap	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	1394167	X_1394167_SNP [dm3] X_1500134_SNP [dm6]	G	A	3.422e^-5	0.665	INTRON inc & 1 other	TF binding site mE1_TFBS_chinmo
3R	8967720	3R_8967720_SNP [dm3] 3R_13141998_SNP [dm6]	C	T	3.450e^-5	0.665	INTRON timeout & 2 others
3L	9198669	3L_9198669_SNP [dm3] 3L_9205569_SNP [dm6]	T	G	3.484e^-5	0.665	INTRON Slc45-1	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
3L	10137979	3L_10137979_SNP [dm3] 3L_10144879_SNP [dm6]	G	A	3.588e^-5	0.665	INTERGENIC
X	13122361	X_13122361_SNP [dm3] X_13228328_SNP [dm6]	C	A	3.618e^-5	0.665	INTRON mew	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7729918	3R_7729918_SNP [dm3] 3R_11904196_SNP [dm6]	T	C	3.702e^-5	0.665	INTRON Cad87A
3L	3624855	3L_3624855_SNP [dm3] 3L_3624855_SNP [dm6]	T	C	3.731e^-5	0.665	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	7109347	3L_7109347_SNP [dm3] 3L_7116247_SNP [dm6]	G	A	3.745e^-5	0.665	INTRON form3
3L	10813788	3L_10813788_SNP [dm3] 3L_10820688_SNP [dm6]	C	T	3.749e^-5	0.665	INTERGENIC
2L	2249095	2L_2249095_SNP [dm3] 2L_2249095_SNP [dm6]	T	G	3.774e^-5	0.665	INTERGENIC
3L	3806533	3L_3806533_SNP [dm3] 3L_3806533_SNP [dm6]	T	C	3.790e^-5	0.665	UPSTREAM IntS10 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3L	2040697	3L_2040697_SNP [dm3] 3L_2040697_SNP [dm6]	A	G	3.793e^-5	0.665	INTRON sls
2L	6313167	2L_6313167_INS [dm3] 2L_6313167_INS [dm6]	T	TT	3.872e^-5	0.667	INTRON Ddr
3R	8944551	3R_8944551_SNP [dm3] 3R_13118829_SNP [dm6]	A	T	3.960e^-5	0.667	INTRON timeout
3R	6996169	3R_6996169_SNP [dm3] 3R_11170447_SNP [dm6]	A	G	3.980e^-5	0.667	UPSTREAM Ugt35b DOWNSTREAM Ugt35a INTERGENIC
3R	2477616	3R_2477616_SNP [dm3] 3R_6651894_SNP [dm6]	A	G	3.987e^-5	0.667	SYNONYMOUS_CODING Taf1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9344107	2R_9344107_SNP [dm3] 2R_13456602_SNP [dm6]	T	C	4.001e^-5	0.667	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_cad
3L	11750138	3L_11750138_SNP [dm3] 3L_11757038_SNP [dm6]	G	A	4.016e^-5	0.667	INTRON CG6024
2L	9593563	2L_9593563_SNP [dm3] 2L_9593563_SNP [dm6]	G	A	4.054e^-5	0.667	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
X	9692131	X_9692131_INS [dm3] X_9798098_INS [dm6]	G	GG	4.177e^-5	0.67	INTRON CG32698
3R	16802862	3R_16802862_SNP [dm3] 3R_20977140_SNP [dm6]	G	T	4.259e^-5	0.67	DOWNSTREAM Atpalpha INTERGENIC
2R	4529818	2R_4529818_SNP [dm3] 2R_8642313_SNP [dm6]	C	T	4.267e^-5	0.67	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
3L	22532407	3L_22532407_SNP [dm3] 3L_22539307_SNP [dm6]	A	T	4.296e^-5	0.67	INTERGENIC
3R	7033291	3R_7033291_SNP [dm3] 3R_11207569_SNP [dm6]	C	T	4.352e^-5	0.67	SYNONYMOUS_CODING cu
2L	6362973	2L_6362973_SNP [dm3] 2L_6362973_SNP [dm6]	G	A	4.377e^-5	0.67	INTERGENIC
X	15261343	X_15261343_SNP [dm3] X_15367310_SNP [dm6]	G	A	4.485e^-5	0.67	INTRON acj6
2L	8781058	2L_8781058_SNP [dm3] 2L_8781058_SNP [dm6]	T	C	4.497e^-5	0.67	DOWNSTREAM CG42710 INTRON CG9468
2L	14095609	2L_14095609_SNP [dm3] 2L_14095609_SNP [dm6]	G	T	4.520e^-5	0.67	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6106124	2L_6106124_SNP [dm3] 2L_6106124_SNP [dm6]	C	T	4.575e^-5	0.67	INTRON stai
3R	6953211	3R_6953211_SNP [dm3] 3R_11127489_SNP [dm6]	G	A	4.582e^-5	0.67	NON_SYNONYMOUS_CODING Ugt86Dd
3R	6995471	3R_6995471_SNP [dm3] 3R_11169749_SNP [dm6]	T	A	4.604e^-5	0.67	SYNONYMOUS_CODING Ugt35b
3R	8959929	3R_8959929_SNP [dm3] 3R_13134207_SNP [dm6]	T	G	4.652e^-5	0.67	INTRON timeout & 2 others
3R	21083424	3R_21083424_SNP [dm3] 3R_25257702_SNP [dm6]	G	A	4.654e^-5	0.67	SYNONYMOUS_CODING Nup358	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	6496737	3L_6496737_SNP [dm3] 3L_6503637_SNP [dm6]	T	G	4.674e^-5	0.67	INTRON sfl	TF binding site BDTNP1_TFBS_dl
2R	15563748	2R_15563748_SNP [dm3] 2R_19676243_SNP [dm6]	G	A	4.725e^-5	0.67	INTERGENIC	TF binding site mE1_TFBS_cad
2R	13088095	2R_13088095_SNP [dm3] 2R_17200590_SNP [dm6]	C	T	4.754e^-5	0.67	INTERGENIC
X	13122627	X_13122627_SNP [dm3] X_13228594_SNP [dm6]	G	T	4.789e^-5	0.67	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	7033438	3R_7033438_SNP [dm3] 3R_11207716_SNP [dm6]	C	T	4.798e^-5	0.67	SYNONYMOUS_CODING cu
3L	3775818	3L_3775818_SNP [dm3] 3L_3775818_SNP [dm6]	C	G	4.846e^-5	0.67	INTRON CG32264
3L	4879616	3L_4879616_SNP [dm3] 3L_4879616_SNP [dm6]	A	G	4.851e^-5	0.67	INTRON CG17150
3L	7838626	3L_7838626_SNP [dm3] 3L_7845526_SNP [dm6]	C	A	4.896e^-5	0.67	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
2L	3749675	2L_3749675_SNP [dm3] 2L_3749675_SNP [dm6]	G	A	4.927e^-5	0.67	INTRON CG10019
3L	10986926	3L_10986926_SNP [dm3] 3L_10993826_SNP [dm6]	G	A	4.929e^-5	0.67	INTRON klu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2484630	3R_2484630_SNP [dm3] 3R_6658908_SNP [dm6]	T	A	5.007e^-5	0.671	DOWNSTREAM agt INTRON twr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	10892030	3R_10892030_SNP [dm3] 3R_15066308_SNP [dm6]	C	T	5.063e^-5	0.671	INTRON dpr9
2R	15144925	2R_15144925_SNP [dm3] 2R_19257420_SNP [dm6]	T	C	5.119e^-5	0.671	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
3L	10977234	3L_10977234_SNP [dm3] 3L_10984134_SNP [dm6]	G	A	5.153e^-5	0.671	SYNONYMOUS_CODING klu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9398929	3L_9398929_SNP [dm3] 3L_9405829_SNP [dm6]	C	T	5.161e^-5	0.671	SYNONYMOUS_CODING Cpr67B DOWNSTREAM CG4022
2R	12458552	2R_12458552_SNP [dm3] 2R_16571047_SNP [dm6]	C	T	5.179e^-5	0.671	UTR_5_PRIME RpS15 DOWNSTREAM CG4945 INTRON RpS15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	14655334	2R_14655334_SNP [dm3] 2R_18767829_SNP [dm6]	T	C	5.232e^-5	0.671	INTRON Mctp
3R	8952579	3R_8952579_SNP [dm3] 3R_13126857_SNP [dm6]	A	G	5.260e^-5	0.671	SYNONYMOUS_CODING 2mit INTRON timeout	TF binding site mE1_TFBS_chinmo
2R	15440875	2R_15440875_INS [dm3] 2R_19553370_INS [dm6]	C	CCATCC	5.260e^-5	0.671	DOWNSTREAM CG43111 INTRON sm	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
X	2293482	X_2293482_SNP [dm3] X_2399449_SNP [dm6]	T	G	5.323e^-5	0.671	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	17922462	2L_17922462_SNP [dm3] 2L_17922462_SNP [dm6]	C	G	5.327e^-5	0.671	INTERGENIC
3L	10209504	3L_10209504_SNP [dm3] 3L_10216404_SNP [dm6]	C	T	5.404e^-5	0.671	SYNONYMOUS_CODING CG8065
3R	21083465	3R_21083465_INS [dm3] 3R_25257743_INS [dm6]	A	ACAA	5.421e^-5	0.671		TF binding site mE1_TFBS_cad
2L	8653407	2L_8653407_SNP [dm3] 2L_8653407_SNP [dm6]	A	G	5.441e^-5	0.671	INTRON Sema-1a
3L	22580737	3L_22580737_SNP [dm3] 3L_22587637_SNP [dm6]	A	G	5.475e^-5	0.671	INTRON CG14459	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8657667	2L_8657667_SNP [dm3] 2L_8657667_SNP [dm6]	G	A	5.539e^-5	0.673	INTRON Sema-1a
3R	20887509	3R_20887509_SNP [dm3] 3R_25061787_SNP [dm6]	A	T	5.563e^-5	0.673	NON_SYNONYMOUS_CODING Unc-13-4B
3R	5879727	3R_5879727_SNP [dm3] 3R_10054005_SNP [dm6]	C	A	5.603e^-5	0.674	SPLICE_SITE_REGION CR44192 SYNONYMOUS_CODING Npc2e EXON CR44192	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7011284	3R_7011284_SNP [dm3] 3R_11185562_SNP [dm6]	T	C	5.679e^-5	0.674	INTERGENIC
3L	3806546	3L_3806546_DEL [dm3] 3L_3806546_DEL [dm6]	CGA	C	5.721e^-5	0.674	UPSTREAM IntS10 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
X	18047857	X_18047857_SNP [dm3] X_18153824_SNP [dm6]	C	A	5.728e^-5	0.674	INTERGENIC
2L	2762285	2L_2762285_SNP [dm3] 2L_2762285_SNP [dm6]	T	G	5.750e^-5	0.674	SYNONYMOUS_CODING Trn-SR
2L	5616991	2L_5616991_SNP [dm3] 2L_5616991_SNP [dm6]	T	G	5.802e^-5	0.676	INTRON CG14010	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8373034	2L_8373034_SNP [dm3] 2L_8373034_SNP [dm6]	C	G	5.956e^-5	0.686	SYNONYMOUS_CODING CG17292	TF binding site mE1_TFBS_HSA
X	12094129	X_12094129_DEL [dm3] X_12200096_DEL [dm6]	ACTCTGGCT	A	5.959e^-5	0.686	INTRON Ten-a
3L	17319237	3L_17319237_SNP [dm3] 3L_17326137_SNP [dm6]	G	A	6.030e^-5	0.686	UPSTREAM CG13725 INTERGENIC
X	1007711	X_1007711_SNP [dm3] X_1113678_SNP [dm6]	C	T	6.034e^-5	0.686	INTRON CG3655
2L	6369079	2L_6369079_SNP [dm3] 2L_6369079_SNP [dm6]	T	G	6.139e^-5	0.693	SYNONYMOUS_CODING CG9505	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13122668	X_13122668_SNP [dm3] X_13228635_SNP [dm6]	A	T	6.177e^-5	0.693	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14655283	2R_14655283_SNP [dm3] 2R_18767778_SNP [dm6]	A	T	6.236e^-5	0.693	INTRON Mctp
X	2293481	X_2293481_SNP [dm3] X_2399448_SNP [dm6]	G	A	6.247e^-5	0.693	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	6581238	2L_6581238_SNP [dm3] 2L_6581238_SNP [dm6]	A	T	6.331e^-5	0.696	INTRON CG11319
3L	7690108	3L_7690108_SNP [dm3] 3L_7697008_SNP [dm6]	C	A	6.380e^-5	0.696	SYNONYMOUS_CODING Ank2 INTRON CG32373
3R	16802995	3R_16802995_DEL [dm3] 3R_20977273_DEL [dm6]	ATAGGTATTAAAATA...	A	6.432e^-5	0.696	UPSTREAM Calx INTERGENIC
3L	12835646	3L_12835646_SNP [dm3] 3L_12842546_SNP [dm6]	C	T	6.445e^-5	0.696	INTRON CG10960	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	7027959	3R_7027959_SNP [dm3] 3R_11202237_SNP [dm6]	G	C	6.496e^-5	0.696	UPSTREAM cu INTRON cu
2L	8780948	2L_8780948_SNP [dm3] 2L_8780948_SNP [dm6]	C	T	6.497e^-5	0.696	DOWNSTREAM CG42710 INTRON CG9468
2L	17051634	2L_17051634_SNP [dm3] 2L_17051634_SNP [dm6]	T	A	6.535e^-5	0.696	INTERGENIC
3L	10451315	3L_10451315_SNP [dm3] 3L_10458215_SNP [dm6]	G	A	6.566e^-5	0.696	DOWNSTREAM Gem3 INTERGENIC
3R	8930555	3R_8930555_SNP [dm3] 3R_13104833_SNP [dm6]	G	A	6.817e^-5	0.716	INTRON timeout
3R	8940509	3R_8940509_SNP [dm3] 3R_13114787_SNP [dm6]	T	C	6.868e^-5	0.716	INTRON timeout
3R	9547430	3R_9547430_SNP [dm3] 3R_13721708_SNP [dm6]	A	T	6.872e^-5	0.716	INTRON CG34383
3L	22579473	3L_22579473_SNP [dm3] 3L_22586373_SNP [dm6]	G	T	6.987e^-5	0.723	INTRON CG14459	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3745252	3R_3745252_SNP [dm3] 3R_7919530_SNP [dm6]	C	T	7.018e^-5	0.723	SYNONYMOUS_CODING CG10445 UPSTREAM lds	TF binding site mE1_TFBS_HSA
3L	16435123	3L_16435123_SNP [dm3] 3L_16442023_SNP [dm6]	G	T	7.235e^-5	0.732	INTRON CG33158 & 1 other
X	5449568	X_5449568_SNP [dm3] X_5555535_SNP [dm6]	C	T	7.238e^-5	0.732	INTRON Vsx2	TF binding site mE1_TFBS_cnc mE1_TFBS_Kr
3R	20632680	3R_20632680_SNP [dm3] 3R_24806958_SNP [dm6]	A	T	7.244e^-5	0.732	UPSTREAM CG6980 INTRON CG5807	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6313644	2L_6313644_SNP [dm3] 2L_6313644_SNP [dm6]	C	G	7.331e^-5	0.732	INTRON Ddr
2R	16937810	2R_16937810_SNP [dm3] 2R_21050305_SNP [dm6]	G	A	7.381e^-5	0.732	UTR_3_PRIME shg	TF binding site BDTNP1_TFBS_dl
3L	9582346	3L_9582346_DEL [dm3] 3L_9589246_DEL [dm6]	CATTCCC	C	7.447e^-5	0.732	INTRON CG42673
2L	13924597	2L_13924597_SNP [dm3] 2L_13924597_SNP [dm6]	T	C	7.467e^-5	0.732	INTRON Ance-3
2L	17837908	2L_17837908_SNP [dm3] 2L_17837908_SNP [dm6]	G	A	7.510e^-5	0.732	INTRON CadN2
3R	7531144	3R_7531144_SNP [dm3] 3R_11705422_SNP [dm6]	A	C	7.595e^-5	0.732	DOWNSTREAM I-t INTERGENIC
2L	10319267	2L_10319267_SNP [dm3] 2L_10319267_SNP [dm6]	C	A	7.597e^-5	0.732	INTRON CG5381
X	9781861	X_9781861_SNP [dm3] X_9887828_SNP [dm6]	T	A	7.683e^-5	0.732	DOWNSTREAM CG15249 INTERGENIC
X	16436243	X_16436243_SNP [dm3] X_16542210_SNP [dm6]	G	C	7.717e^-5	0.732	UTR_3_PRIME CG9902
2L	17050367	2L_17050367_SNP [dm3] 2L_17050367_SNP [dm6]	A	T	7.733e^-5	0.732	INTERGENIC
3L	3785565	3L_3785565_DEL [dm3] 3L_3785565_DEL [dm6]	TGTTGTTTCGGCAAAAC...	G	7.735e^-5	0.732	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	22579450	3L_22579450_SNP [dm3] 3L_22586350_SNP [dm6]	G	T	7.781e^-5	0.732	INTRON CG14459	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	8952419	3R_8952419_SNP [dm3] 3R_13126697_SNP [dm6]	G	A	7.792e^-5	0.732	NON_SYNONYMOUS_CODING 2mit INTRON timeout	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11976461	2L_11976461_SNP [dm3] 2L_11976461_SNP [dm6]	C	T	7.808e^-5	0.732	INTERGENIC
X	6994720	X_6994720_DEL [dm3] X_7100687_DEL [dm6]	TTTGGGCCTCGCCTC...	T	7.858e^-5	0.732	INTRON CG4615	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8653418	2L_8653418_SNP [dm3] 2L_8653418_SNP [dm6]	T	A	7.894e^-5	0.732	INTRON Sema-1a
X	5130166	X_5130166_SNP [dm3] X_5236133_SNP [dm6]	T	A	7.909e^-5	0.732	NON_SYNONYMOUS_CODING rg UTR_3_PRIME CG15465
3R	21657622	3R_21657622_SNP [dm3] 3R_25831900_SNP [dm6]	A	G	7.954e^-5	0.732	UPSTREAM Mst57Db & 2 others INTERGENIC
X	16436246	X_16436246_SNP [dm3] X_16542213_SNP [dm6]	G	T	7.964e^-5	0.732	UTR_3_PRIME CG9902
3R	16498262	3R_16498262_SNP [dm3] 3R_20672540_SNP [dm6]	C	T	8.101e^-5	0.736	UTR_3_PRIME Cpr92F
3R	7033025	3R_7033025_SNP [dm3] 3R_11207303_SNP [dm6]	G	T	8.220e^-5	0.736	INTRON cu
3L	4736710	3L_4736710_SNP [dm3] 3L_4736710_SNP [dm6]	T	A	8.225e^-5	0.736	INTRON RhoGEF64C
3R	24034451	3R_24034451_SNP [dm3] 3R_28208729_SNP [dm6]	A	G	8.249e^-5	0.736	INTRON CG34354	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	10963757	3L_10963757_SNP [dm3] 3L_10970657_SNP [dm6]	G	T	8.250e^-5	0.736	INTERGENIC
2L	8658062	2L_8658062_SNP [dm3] 2L_8658062_SNP [dm6]	C	T	8.263e^-5	0.736	INTRON Sema-1a
3L	11868800	3L_11868800_SNP [dm3] 3L_11875700_SNP [dm6]	T	C	8.328e^-5	0.736	INTRON CG44837
3R	9815627	3R_9815627_SNP [dm3] 3R_13989905_SNP [dm6]	C	G	8.419e^-5	0.736	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10886758	3R_10886758_SNP [dm3] 3R_15061036_SNP [dm6]	A	T	8.447e^-5	0.736	INTRON dpr9
3R	8932612	3R_8932612_SNP [dm3] 3R_13106890_SNP [dm6]	A	T	8.485e^-5	0.736	SYNONYMOUS_CODING timeout
3L	2865801	3L_2865801_SNP [dm3] 3L_2865801_SNP [dm6]	A	G	8.519e^-5	0.736	INTRON CG43444	TF binding site BDTNP1_TFBS_twi
3L	11058537	3L_11058537_SNP [dm3] 3L_11065437_SNP [dm6]	A	T	8.562e^-5	0.736	NON_SYNONYMOUS_CODING SuUR UTR_3_PRIME CG45101 UPSTREAM CG32075	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	18436644	2R_18436644_SNP [dm3] 2R_22549139_SNP [dm6]	A	T	8.563e^-5	0.736	UPSTREAM CG6018 INTRON px
X	12094143	X_12094143_DEL [dm3] X_12200110_DEL [dm6]	ATGTCTCTTAAGCT...	A	8.570e^-5	0.736	INTRON Ten-a
2L	5961822	2L_5961822_SNP [dm3] 2L_5961822_SNP [dm6]	A	G	8.603e^-5	0.736	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4194315	2L_4194315_SNP [dm3] 2L_4194315_SNP [dm6]	C	A	8.657e^-5	0.736	INTRON CG3714
2R	14713663	2R_14713663_DEL [dm3] 2R_18826158_DEL [dm6]	TTGGTGT	T	8.670e^-5	0.736	UTR_5_PRIME CG15097 UPSTREAM CG15097
X	5921347	X_5921347_SNP [dm3] X_6027314_SNP [dm6]	C	G	8.813e^-5	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	2293463	X_2293463_SNP [dm3] X_2399430_SNP [dm6]	G	C	8.860e^-5	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	21223741	3R_21223741_SNP [dm3] 3R_25398019_SNP [dm6]	G	A	8.868e^-5	0.741	SYNONYMOUS_CODING Muc96D INTRON Fur1
3R	21657604	3R_21657604_SNP [dm3] 3R_25831882_SNP [dm6]	C	T	8.883e^-5	0.741	UTR_5_PRIME Mst57Da UPSTREAM Mst57Db & 1 other
X	6430888	X_6430888_SNP [dm3] X_6536855_SNP [dm6]	T	C	9.005e^-5	0.743	INTRON dx	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8769718	2L_8769718_SNP [dm3] 2L_8769718_SNP [dm6]	C	T	9.013e^-5	0.743	SYNONYMOUS_CODING CG9465	TF binding site mE1_TFBS_sens
3R	4701521	3R_4701521_SNP [dm3] 3R_8875799_SNP [dm6]	C	T	9.054e^-5	0.743	INTRON pyd
2R	1602222	2R_1602222_SNP [dm3] 2R_5714717_SNP [dm6]	C	A	9.076e^-5	0.743	INTRON ap
2L	6370525	2L_6370525_SNP [dm3] 2L_6370525_SNP [dm6]	C	T	9.214e^-5	0.746	DOWNSTREAM CG9505 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	3509859	3R_3509859_SNP [dm3] 3R_7684137_SNP [dm6]	A	C	9.218e^-5	0.746	INTRON Nlg1
3L	6476730	3L_6476730_SNP [dm3] 3L_6483630_SNP [dm6]	A	C	9.224e^-5	0.746	INTRON CG42747	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	17056278	2L_17056278_SNP [dm3] 2L_17056278_SNP [dm6]	A	G	9.273e^-5	0.746	INTERGENIC
2L	6376315	2L_6376315_SNP [dm3] 2L_6376315_SNP [dm6]	T	C	9.350e^-5	0.746	SYNONYMOUS_CODING slam	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	3980122	2L_3980122_SNP [dm3] 2L_3980122_SNP [dm6]	G	A	9.386e^-5	0.746	INTRON fred
3R	25776954	3R_25776954_SNP [dm3] 3R_29951232_SNP [dm6]	C	T	9.435e^-5	0.746	UTR_3_PRIME TkR99D
2R	5112193	2R_5112193_SNP [dm3] 2R_9224688_SNP [dm6]	A	T	9.512e^-5	0.746	INTERGENIC
2R	18436653	2R_18436653_SNP [dm3] 2R_22549148_SNP [dm6]	G	A	9.585e^-5	0.746	UPSTREAM CG6018 INTRON px
2R	11662392	2R_11662392_SNP [dm3] 2R_15774887_SNP [dm6]	A	G	9.588e^-5	0.746	SYNONYMOUS_CODING Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7036949	3R_7036949_SNP [dm3] 3R_11211227_SNP [dm6]	G	A	9.595e^-5	0.746	UTR_3_PRIME Tctp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13122369	X_13122369_SNP [dm3] X_13228336_SNP [dm6]	G	A	9.615e^-5	0.746	INTRON mew	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2292962	X_2292962_SNP [dm3] X_2398929_SNP [dm6]	A	G	9.681e^-5	0.746	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	9344047	2R_9344047_SNP [dm3] 2R_13456542_SNP [dm6]	A	T	9.683e^-5	0.746	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_cad
3R	5811260	3R_5811260_SNP [dm3] 3R_9985538_SNP [dm6]	C	T	9.765e^-5	0.746	NON_SYNONYMOUS_CODING Art4 INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	11109607	3R_11109607_SNP [dm3] 3R_15283885_SNP [dm6]	A	G	9.820e^-5	0.746	INTRON Tm1
X	19057882	X_19057882_SNP [dm3] X_19163849_SNP [dm6]	C	T	9.923e^-5	0.746	INTRON RhoGAP18B
3R	25776970	3R_25776970_SNP [dm3] 3R_29951248_SNP [dm6]	G	A	9.969e^-5	0.746	UTR_3_PRIME TkR99D
2L	2764032	2L_2764032_SNP [dm3] 2L_2764032_SNP [dm6]	A	C	1.005e^-4	0.746	UTR_3_PRIME CG3077 DOWNSTREAM CG3077 & 1 other
3R	21895413	3R_21895413_SNP [dm3] 3R_26069691_SNP [dm6]	G	A	1.005e^-4	0.746	DOWNSTREAM CR44950 INTERGENIC
3R	21513204	3R_21513204_SNP [dm3] 3R_25687482_SNP [dm6]	A	C	1.009e^-4	0.746	UPSTREAM CLS INTERGENIC	TF binding site mE1_TFBS_cad
2R	11663381	2R_11663381_SNP [dm3] 2R_15775876_SNP [dm6]	T	A	1.009e^-4	0.746	START_GAINED Zasp52 UTR_5_PRIME Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_chinmo
3R	8952529	3R_8952529_SNP [dm3] 3R_13126807_SNP [dm6]	C	T	1.010e^-4	0.746	SYNONYMOUS_CODING 2mit INTRON timeout	TF binding site mE1_TFBS_chinmo
2L	3749689	2L_3749689_SNP [dm3] 2L_3749689_SNP [dm6]	T	C	1.014e^-4	0.746	INTRON CG10019
X	16366400	X_16366400_SNP [dm3] X_16472367_SNP [dm6]	A	G	1.017e^-4	0.746	INTRON para	TF binding site BDTNP1_TFBS_dl
X	14545407	X_14545407_SNP [dm3] X_14651374_SNP [dm6]	C	G	1.022e^-4	0.746	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9582377	3L_9582377_DEL [dm3] 3L_9589277_DEL [dm6]	TT	C	1.022e^-4	0.746	INTRON CG42673
3L	9582384	3L_9582384_SNP [dm3] 3L_9589284_SNP [dm6]	A	C	1.022e^-4	0.746	INTRON CG42673
2R	16180930	2R_16180930_SNP [dm3] 2R_20293425_SNP [dm6]	C	T	1.033e^-4	0.747	UPSTREAM CR44639 DOWNSTREAM CR44638 INTERGENIC
3R	8952481	3R_8952481_SNP [dm3] 3R_13126759_SNP [dm6]	A	G	1.037e^-4	0.747	SYNONYMOUS_CODING 2mit INTRON timeout	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5130544	X_5130544_SNP [dm3] X_5236511_SNP [dm6]	T	A	1.041e^-4	0.747	NON_SYNONYMOUS_CODING rg UTR_3_PRIME CG15465
X	5130566	X_5130566_SNP [dm3] X_5236533_SNP [dm6]	G	A	1.041e^-4	0.747	SYNONYMOUS_CODING rg UTR_3_PRIME CG15465
3R	22794450	3R_22794450_SNP [dm3] 3R_26968728_SNP [dm6]	A	C	1.044e^-4	0.747	INTRON CG5521
X	13122462	X_13122462_SNP [dm3] X_13228429_SNP [dm6]	G	A	1.058e^-4	0.751	INTRON mew	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1834769	3L_1834769_SNP [dm3] 3L_1834769_SNP [dm6]	A	G	1.060e^-4	0.751	INTRON Cpr62Bb	TF binding site mE1_TFBS_inv
2R	11662710	2R_11662710_SNP [dm3] 2R_15775205_SNP [dm6]	C	A	1.061e^-4	0.751	SYNONYMOUS_CODING Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5112171	2R_5112171_SNP [dm3] 2R_9224666_SNP [dm6]	T	A	1.076e^-4	0.755	INTERGENIC
2L	14114839	2L_14114839_SNP [dm3] 2L_14114839_SNP [dm6]	C	T	1.081e^-4	0.755	INTERGENIC
2L	6363065	2L_6363065_SNP [dm3] 2L_6363065_SNP [dm6]	A	G	1.081e^-4	0.755	INTERGENIC
2L	2763913	2L_2763913_SNP [dm3] 2L_2763913_SNP [dm6]	T	A	1.082e^-4	0.755	UTR_3_PRIME CG3077 DOWNSTREAM CG3077 & 1 other
2L	2762366	2L_2762366_SNP [dm3] 2L_2762366_SNP [dm6]	C	T	1.089e^-4	0.757	SYNONYMOUS_CODING Trn-SR	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5282036	3L_5282036_SNP [dm3] 3L_5288936_SNP [dm6]	T	A	1.096e^-4	0.758	INTERGENIC
X	18908741	X_18908741_SNP [dm3] X_19014708_SNP [dm6]	A	T	1.099e^-4	0.758	INTRON CG43759	TF binding site mE1_TFBS_cad
3L	4880569	3L_4880569_SNP [dm3] 3L_4880569_SNP [dm6]	G	A	1.109e^-4	0.76	INTRON CG17150
3R	26600800	3R_26600800_SNP [dm3] 3R_30775078_SNP [dm6]	T	G	1.113e^-4	0.76	INTRON zfh1	TF binding site mE1_TFBS_cad
X	5921486	X_5921486_SNP [dm3] X_6027453_SNP [dm6]	G	C	1.117e^-4	0.76	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	2453327	2R_2453327_SNP [dm3] 2R_6565822_SNP [dm6]	G	T	1.122e^-4	0.76	INTRON jing
3L	10462590	3L_10462590_SNP [dm3] 3L_10469490_SNP [dm6]	T	G	1.127e^-4	0.76	DOWNSTREAM S-Lap3 INTERGENIC
2L	10920486	2L_10920486_SNP [dm3] 2L_10920486_SNP [dm6]	T	C	1.132e^-4	0.76	INTRON dpr2
2L	9186936	2L_9186936_SNP [dm3] 2L_9186936_SNP [dm6]	T	A	1.134e^-4	0.76	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2764202	2L_2764202_SNP [dm3] 2L_2764202_SNP [dm6]	A	C	1.134e^-4	0.76	UTR_3_PRIME CG3077 DOWNSTREAM Trn-SR
3R	4514208	3R_4514208_SNP [dm3] 3R_8688486_SNP [dm6]	T	A	1.148e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15029834	3R_15029834_SNP [dm3] 3R_19204112_SNP [dm6]	C	A	1.166e^-4	0.773	INTERGENIC
X	16436481	X_16436481_DEL [dm3] X_16542448_DEL [dm6]	GG	G	1.170e^-4	0.773	UTR_3_PRIME CG9902
3R	6502109	3R_6502109_SNP [dm3] 3R_10676387_SNP [dm6]	A	G	1.171e^-4	0.773	INTRON CG6465
2L	8769715	2L_8769715_SNP [dm3] 2L_8769715_SNP [dm6]	T	C	1.175e^-4	0.773	SYNONYMOUS_CODING CG9465	TF binding site mE1_TFBS_sens
3R	6449570	3R_6449570_SNP [dm3] 3R_10623848_SNP [dm6]	G	A	1.192e^-4	0.775	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21063013	3R_21063013_SNP [dm3] 3R_25237291_SNP [dm6]	C	T	1.195e^-4	0.775	UPSTREAM CG11852 INTERGENIC
3L	2527687	3L_2527687_SNP [dm3] 3L_2527687_SNP [dm6]	T	G	1.198e^-4	0.775	UPSTREAM CG32295 INTRON Spn
X	13317739	X_13317739_SNP [dm3] X_13423706_SNP [dm6]	A	T	1.201e^-4	0.775	INTERGENIC
3R	20632592	3R_20632592_SNP [dm3] 3R_24806870_SNP [dm6]	A	G	1.202e^-4	0.775	SYNONYMOUS_CODING CG5807 UPSTREAM CG6980	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2092151	3L_2092151_SNP [dm3] 3L_2092151_SNP [dm6]	T	C	1.205e^-4	0.775	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24034403	3R_24034403_SNP [dm3] 3R_28208681_SNP [dm6]	G	T	1.215e^-4	0.775	INTRON CG34354	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	15355443	3R_15355443_SNP [dm3] 3R_19529721_SNP [dm6]	T	C	1.216e^-4	0.775	INTRON Dys
2L	9123441	2L_9123441_SNP [dm3] 2L_9123441_SNP [dm6]	T	C	1.216e^-4	0.775	UPSTREAM CR44615 INTERGENIC
2L	2763711	2L_2763711_SNP [dm3] 2L_2763711_SNP [dm6]	G	T	1.220e^-4	0.775	UTR_3_PRIME Trn-SR & 1 other DOWNSTREAM CG3077 & 1 other
3R	26522181	3R_26522181_SNP [dm3] 3R_30696459_SNP [dm6]	A	G	1.224e^-4	0.775	UPSTREAM CG12069 INTRON Pka-C2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11868791	3L_11868791_SNP [dm3] 3L_11875691_SNP [dm6]	G	A	1.230e^-4	0.775	INTRON CG44837
X	5958821	X_5958821_SNP [dm3] X_6064788_SNP [dm6]	G	A	1.234e^-4	0.775	UTR_3_PRIME CG5921 DOWNSTREAM CG5921 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12828504	3L_12828504_SNP [dm3] 3L_12835404_SNP [dm6]	T	A	1.239e^-4	0.775	INTRON CG10960	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sbb
3L	12650809	3L_12650809_SNP [dm3] 3L_12657709_SNP [dm6]	G	T	1.251e^-4	0.775	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	11393804	3L_11393804_SNP [dm3] 3L_11400704_SNP [dm6]	G	A	1.264e^-4	0.775	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14410157	2L_14410157_SNP [dm3] 2L_14410157_SNP [dm6]	G	C	1.268e^-4	0.775	UPSTREAM elB DOWNSTREAM CR44733 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
3R	12565210	3R_12565210_INS [dm3] 3R_16739488_INS [dm6]	T	TT	1.273e^-4	0.775	INTERGENIC	TF binding site mE1_TFBS_cad
3L	22510796	3L_22510796_SNP [dm3] 3L_22517696_SNP [dm6]	C	T	1.275e^-4	0.775	DOWNSTREAM mir-957 INTERGENIC
X	18719226	X_18719226_SNP [dm3] X_18825193_SNP [dm6]	C	A	1.278e^-4	0.775	INTRON CG42450	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11676567	2L_11676567_SNP [dm3] 2L_11676567_SNP [dm6]	C	A	1.284e^-4	0.775	INTERGENIC
2R	9344013	2R_9344013_SNP [dm3] 2R_13456508_SNP [dm6]	T	A	1.296e^-4	0.775	INTRON arr	TF binding site mE1_TFBS_cad
2R	9344023	2R_9344023_SNP [dm3] 2R_13456518_SNP [dm6]	G	T	1.296e^-4	0.775	INTRON arr	TF binding site mE1_TFBS_cad
2R	9344025	2R_9344025_SNP [dm3] 2R_13456520_SNP [dm6]	T	A	1.296e^-4	0.775	INTRON arr	TF binding site mE1_TFBS_cad
2R	9344028	2R_9344028_SNP [dm3] 2R_13456523_SNP [dm6]	A	T	1.296e^-4	0.775	INTRON arr	TF binding site mE1_TFBS_cad
2L	8781972	2L_8781972_SNP [dm3] 2L_8781972_SNP [dm6]	G	A	1.298e^-4	0.775	SYNONYMOUS_CODING CG42710 UPSTREAM CG9468
3R	26161028	3R_26161028_SNP [dm3] 3R_30335306_SNP [dm6]	C	T	1.299e^-4	0.775	INTRON hdc
2R	13315722	2R_13315722_SNP [dm3] 2R_17428217_SNP [dm6]	G	A	1.309e^-4	0.775	SYNONYMOUS_CODING Mtap UPSTREAM CG6550	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	2556239	X_2556239_SNP [dm3] X_2662206_SNP [dm6]	G	T	1.310e^-4	0.775	INTRON sgg
X	10025818	X_10025818_SNP [dm3] X_10131785_SNP [dm6]	G	A	1.313e^-4	0.775	INTRON CR44894 & 1 other
3R	10301421	3R_10301421_DEL [dm3] 3R_14475699_DEL [dm6]	TTATAGCC	T	1.318e^-4	0.775	INTRON cv-c	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8169097	2L_8169097_SNP [dm3] 2L_8169097_SNP [dm6]	T	G	1.323e^-4	0.775	INTRON Piezo
3R	14448315	3R_14448315_SNP [dm3] 3R_18622593_SNP [dm6]	G	T	1.336e^-4	0.775	INTRON qin	TF binding site mE1_TFBS_inv
3R	21657882	3R_21657882_SNP [dm3] 3R_25832160_SNP [dm6]	C	A	1.337e^-4	0.775	UPSTREAM alpha4GT2 & 1 other INTERGENIC
2R	9344031	2R_9344031_SNP [dm3] 2R_13456526_SNP [dm6]	A	T	1.340e^-4	0.775	INTRON arr	TF binding site mE1_TFBS_cad
3L	2001397	3L_2001397_DEL [dm3] 3L_2001397_DEL [dm6]	AA	A	1.344e^-4	0.775	INTERGENIC
2L	8781757	2L_8781757_SNP [dm3] 2L_8781757_SNP [dm6]	A	G	1.347e^-4	0.775	UPSTREAM CG9468 DOWNSTREAM CG42710 INTERGENIC
3R	6953259	3R_6953259_SNP [dm3] 3R_11127537_SNP [dm6]	A	T	1.355e^-4	0.775	NON_SYNONYMOUS_CODING Ugt86Dd
X	20666234	X_20666234_SNP [dm3] X_20795207_SNP [dm6]	G	A	1.362e^-4	0.775	INTRON shakB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14410147	2L_14410147_SNP [dm3] 2L_14410147_SNP [dm6]	G	T	1.364e^-4	0.775	UPSTREAM elB DOWNSTREAM CR44733 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
3R	8961585	3R_8961585_SNP [dm3] 3R_13135863_SNP [dm6]	G	T	1.365e^-4	0.775	INTRON timeout & 2 others
2L	17085394	2L_17085394_SNP [dm3] 2L_17085394_SNP [dm6]	G	A	1.367e^-4	0.775	UPSTREAM CR43819 INTERGENIC
2R	11451200	2R_11451200_SNP [dm3] 2R_15563695_SNP [dm6]	T	C	1.377e^-4	0.775	INTRON CG8195	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2077127	3L_2077127_SNP [dm3] 3L_2077127_SNP [dm6]	C	G	1.377e^-4	0.775	SYNONYMOUS_CODING sls INTRON sls
2L	8530718	2L_8530718_SNP [dm3] 2L_8530718_SNP [dm6]	T	A	1.381e^-4	0.775	INTRON CG17834
X	5958819	X_5958819_SNP [dm3] X_6064786_SNP [dm6]	A	G	1.382e^-4	0.775	UTR_3_PRIME CG5921 DOWNSTREAM CG5921 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22580674	3L_22580674_SNP [dm3] 3L_22587574_SNP [dm6]	G	A	1.384e^-4	0.775	INTRON CG14459	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22794407	3R_22794407_SNP [dm3] 3R_26968685_SNP [dm6]	G	A	1.387e^-4	0.775	INTRON CG5521
2L	8769721	2L_8769721_SNP [dm3] 2L_8769721_SNP [dm6]	C	T	1.388e^-4	0.775	SYNONYMOUS_CODING CG9465	TF binding site mE1_TFBS_sens
2R	13088890	2R_13088890_INS [dm3] 2R_17201385_INS [dm6]	C	CCAAATC	1.395e^-4	0.775	INTERGENIC
3L	8191062	3L_8191062_INS [dm3] 3L_8197962_INS [dm6]	C	CCAATGCTTAC...	1.400e^-4	0.775	UTR_5_PRIME Ubc12 UPSTREAM CG8005 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	5904898	2L_5904898_SNP [dm3] 2L_5904898_SNP [dm6]	C	T	1.402e^-4	0.775	UPSTREAM CG9021 DOWNSTREAM CR43808 INTERGENIC
3L	9920164	3L_9920164_SNP [dm3] 3L_9927064_SNP [dm6]	T	G	1.409e^-4	0.775	UPSTREAM CG34356 INTRON CG34356
3R	14448301	3R_14448301_SNP [dm3] 3R_18622579_SNP [dm6]	G	A	1.409e^-4	0.775	INTRON qin	TF binding site mE1_TFBS_inv
2L	11593384	2L_11593384_INS [dm3] 2L_11593384_INS [dm6]	A	AA	1.412e^-4	0.775	INTRON kek2
3L	10462468	3L_10462468_SNP [dm3] 3L_10469368_SNP [dm6]	C	A	1.419e^-4	0.775	DOWNSTREAM S-Lap3 INTERGENIC
3R	26016419	3R_26016419_SNP [dm3] 3R_30190697_SNP [dm6]	T	C	1.420e^-4	0.775	SYNONYMOUS_CODING CG9747	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3803010	3L_3803010_SNP [dm3] 3L_3803010_SNP [dm6]	G	A	1.424e^-4	0.775	DOWNSTREAM ntc INTRON CG32264
2L	2945919	2L_2945919_SNP [dm3] 2L_2945919_SNP [dm6]	C	T	1.425e^-4	0.775	UPSTREAM lilli INTRON lilli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8905704	2R_8905704_SNP [dm3] 2R_13018199_SNP [dm6]	A	G	1.431e^-4	0.775	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	3771382	3L_3771382_SNP [dm3] 3L_3771382_SNP [dm6]	G	C	1.434e^-4	0.775	INTRON CG32264
2L	14410156	2L_14410156_SNP [dm3] 2L_14410156_SNP [dm6]	A	C	1.436e^-4	0.775	UPSTREAM elB DOWNSTREAM CR44733 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
3R	20886760	3R_20886760_SNP [dm3] 3R_25061038_SNP [dm6]	G	A	1.460e^-4	0.775	SYNONYMOUS_CODING Unc-13-4B	TF binding site mE1_TFBS_cad
3R	8961573	3R_8961573_SNP [dm3] 3R_13135851_SNP [dm6]	C	T	1.464e^-4	0.775	INTRON timeout & 2 others
3R	8930563	3R_8930563_SNP [dm3] 3R_13104841_SNP [dm6]	T	A	1.465e^-4	0.775	INTRON timeout
2R	18436648	2R_18436648_SNP [dm3] 2R_22549143_SNP [dm6]	G	A	1.469e^-4	0.775	UPSTREAM CG6018 INTRON px
3L	12828628	3L_12828628_SNP [dm3] 3L_12835528_SNP [dm6]	G	T	1.473e^-4	0.775	INTRON CG10960	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	9909281	3R_9909281_SNP [dm3] 3R_14083559_SNP [dm6]	T	C	1.474e^-4	0.775	INTRON foxo
3R	2482944	3R_2482944_SNP [dm3] 3R_6657222_SNP [dm6]	T	C	1.474e^-4	0.775	NON_SYNONYMOUS_CODING CG1307 UPSTREAM twr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk
3L	12829667	3L_12829667_SNP [dm3] 3L_12836567_SNP [dm6]	G	T	1.489e^-4	0.775	INTRON CG10960	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6987004	3R_6987004_SNP [dm3] 3R_11161282_SNP [dm6]	C	T	1.493e^-4	0.775	SYNONYMOUS_CODING CG4757
2L	8169139	2L_8169139_SNP [dm3] 2L_8169139_SNP [dm6]	C	A	1.494e^-4	0.775	INTRON Piezo
2L	16063676	2L_16063676_INS [dm3] 2L_16063676_INS [dm6]	C	AT	1.495e^-4	0.775	INTRON beat-Ia	TF binding site BDTNP1_TFBS_twi
3L	9243749	3L_9243749_SNP [dm3] 3L_9250649_SNP [dm6]	C	G	1.496e^-4	0.775	SYNONYMOUS_CODING CG4477	TF binding site BDTNP1_TFBS_twi
2L	14410054	2L_14410054_SNP [dm3] 2L_14410054_SNP [dm6]	T	A	1.496e^-4	0.775	UPSTREAM elB DOWNSTREAM CR44733 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2L	15029467	2L_15029467_SNP [dm3] 2L_15029467_SNP [dm6]	C	T	1.497e^-4	0.775	SYNONYMOUS_CODING CG33310 INTRON GABA-B-R1
2R	12783740	2R_12783740_SNP [dm3] 2R_16896235_SNP [dm6]	C	T	1.503e^-4	0.775	UPSTREAM mir-990 & 1 other INTERGENIC
2R	5108363	2R_5108363_SNP [dm3] 2R_9220858_SNP [dm6]	G	A	1.505e^-4	0.775	INTERGENIC
3R	8965892	3R_8965892_SNP [dm3] 3R_13140170_SNP [dm6]	T	A	1.513e^-4	0.775	INTRON timeout & 2 others
X	16942571	X_16942571_SNP [dm3] X_17048538_SNP [dm6]	G	A	1.519e^-4	0.775	INTRON CG45002
3R	8940505	3R_8940505_SNP [dm3] 3R_13114783_SNP [dm6]	A	G	1.522e^-4	0.775	INTRON timeout
X	15400857	X_15400857_SNP [dm3] X_15506824_SNP [dm6]	G	A	1.523e^-4	0.775	INTRON Gmap	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9349647	2R_9349647_DEL [dm3] 2R_13462142_DEL [dm6]	GC	G	1.524e^-4	0.775	INTRON arr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12252072	2L_12252072_SNP [dm3] 2L_12252072_SNP [dm6]	G	T	1.524e^-4	0.775	INTRON aret	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10270642	3L_10270642_SNP [dm3] 3L_10277542_SNP [dm6]	A	G	1.531e^-4	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	4930800	3L_4930800_SNP [dm3] 3L_4930800_SNP [dm6]	T	A	1.552e^-4	0.777	INTRON CR43627	regulatory region REDfly_CRMs
3R	14460275	3R_14460275_SNP [dm3] 3R_18634553_SNP [dm6]	T	A	1.557e^-4	0.777	INTRON qin & 1 other
3R	26474171	3R_26474171_SNP [dm3] 3R_30648449_SNP [dm6]	G	A	1.560e^-4	0.777	SYNONYMOUS_CODING PH4alphaPV UPSTREAM CG34432
2R	10162401	2R_10162401_SNP [dm3] 2R_14274896_SNP [dm6]	A	G	1.564e^-4	0.777	UTR_3_PRIME conv	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	19169693	X_19169693_INS [dm3] X_19275660_INS [dm6]	T	TGTT	1.565e^-4	0.777	UPSTREAM CG32537 INTRON CG32537 & 1 other
2L	1082690	2L_1082690_DEL [dm3] 2L_1082690_DEL [dm6]	CCAT	C	1.565e^-4	0.777	DOWNSTREAM CG4629 INTRON Atg4a	TF binding site mE1_TFBS_inv
2R	16510567	2R_16510567_SNP [dm3] 2R_20623062_SNP [dm6]	A	G	1.566e^-4	0.777	SYNONYMOUS_CODING CG11180 UPSTREAM CG16742	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	20486107	X_20486107_SNP [dm3] X_20615080_SNP [dm6]	C	T	1.567e^-4	0.777	INTRON RunxA	transposable element FlyBase
2L	6363188	2L_6363188_SNP [dm3] 2L_6363188_SNP [dm6]	C	T	1.570e^-4	0.777	INTERGENIC
3R	14448300	3R_14448300_SNP [dm3] 3R_18622578_SNP [dm6]	C	T	1.588e^-4	0.782	INTRON qin	TF binding site mE1_TFBS_inv
3R	17769388	3R_17769388_SNP [dm3] 3R_21943666_SNP [dm6]	T	G	1.591e^-4	0.782	INTERGENIC
3L	2405614	3L_2405614_SNP [dm3] 3L_2405614_SNP [dm6]	G	C	1.593e^-4	0.782	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	16802823	3R_16802823_SNP [dm3] 3R_20977101_SNP [dm6]	A	T	1.620e^-4	0.786	DOWNSTREAM Atpalpha INTERGENIC
3R	6432887	3R_6432887_SNP [dm3] 3R_10607165_SNP [dm6]	C	A	1.620e^-4	0.786	INTRON hth
3L	10151900	3L_10151900_SNP [dm3] 3L_10158800_SNP [dm6]	G	C	1.631e^-4	0.786	INTRON dpr10
X	2302507	X_2302507_SNP [dm3] X_2408474_SNP [dm6]	T	A	1.632e^-4	0.786	DOWNSTREAM CG12496 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	25074289	3R_25074289_SNP [dm3] 3R_29248567_SNP [dm6]	G	A	1.632e^-4	0.786	INTRON SP1029
3R	14460276	3R_14460276_SNP [dm3] 3R_18634554_SNP [dm6]	C	A	1.633e^-4	0.786	INTRON qin & 1 other
2L	7772086	2L_7772086_SNP [dm3] 2L_7772086_SNP [dm6]	G	T	1.636e^-4	0.786	INTRON CG7191	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2266158	3L_2266158_SNP [dm3] 3L_2266158_SNP [dm6]	A	C	1.644e^-4	0.786	UPSTREAM CG13806 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	13106491	3R_13106491_SNP [dm3] 3R_17280769_SNP [dm6]	G	C	1.645e^-4	0.786	INTERGENIC
2R	12516230	2R_12516230_SNP [dm3] 2R_16628725_SNP [dm6]	A	C	1.655e^-4	0.786	UTR_3_PRIME Alk
3L	8006620	3L_8006620_SNP [dm3] 3L_8013520_SNP [dm6]	C	G	1.657e^-4	0.786	INTRON nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16178742	2R_16178742_SNP [dm3] 2R_20291237_SNP [dm6]	A	G	1.658e^-4	0.786	DOWNSTREAM CkIIbeta2 INTRON Cpr56F
X	14691819	X_14691819_SNP [dm3] X_14797786_SNP [dm6]	A	G	1.660e^-4	0.786	INTRON rut
3R	7026859	3R_7026859_DEL [dm3] 3R_11201137_DEL [dm6]	GAACAA	TGT	1.663e^-4	0.786	INTRON cu
3L	17319945	3L_17319945_DEL [dm3] 3L_17326845_DEL [dm6]	TGTGGAAA	T	1.663e^-4	0.786	DOWNSTREAM Or74a INTERGENIC
3L	6876422	3L_6876422_DEL [dm3] 3L_6883322_DEL [dm6]	TTTTTT	CCTA	1.684e^-4	0.791	EXON CR45416
3R	24034413	3R_24034413_SNP [dm3] 3R_28208691_SNP [dm6]	T	G	1.696e^-4	0.791	INTRON CG34354	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	16418714	2R_16418714_SNP [dm3] 2R_20531209_SNP [dm6]	A	T	1.699e^-4	0.791	UPSTREAM CR44651 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6312778	2L_6312778_SNP [dm3] 2L_6312778_SNP [dm6]	C	A	1.710e^-4	0.791	INTRON Ddr
3R	8967172	3R_8967172_SNP [dm3] 3R_13141450_SNP [dm6]	A	G	1.710e^-4	0.791	INTRON timeout & 2 others
2R	12315150	2R_12315150_SNP [dm3] 2R_16427645_SNP [dm6]	A	G	1.713e^-4	0.791	INTRON Sema-2b
3R	10301395	3R_10301395_SNP [dm3] 3R_14475673_SNP [dm6]	C	T	1.718e^-4	0.791	INTRON cv-c	TF binding site mE1_TFBS_sbb
3R	10974771	3R_10974771_SNP [dm3] 3R_15149049_SNP [dm6]	C	G	1.720e^-4	0.791	INTERGENIC
X	20486665	X_20486665_SNP [dm3] X_20615638_SNP [dm6]	A	G	1.721e^-4	0.791	INTRON RunxA
3L	11396350	3L_11396350_SNP [dm3] 3L_11403250_SNP [dm6]	A	C	1.721e^-4	0.791	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	10162432	2R_10162432_SNP [dm3] 2R_14274927_SNP [dm6]	A	G	1.728e^-4	0.791	UTR_3_PRIME conv	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	10162442	2R_10162442_SNP [dm3] 2R_14274937_SNP [dm6]	G	A	1.728e^-4	0.791	UTR_3_PRIME conv	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	8958396	3R_8958396_SNP [dm3] 3R_13132674_SNP [dm6]	C	G	1.734e^-4	0.791	UTR_5_PRIME 2mit UPSTREAM 2mit INTRON timeout EXON CR45109
3R	24034394	3R_24034394_SNP [dm3] 3R_28208672_SNP [dm6]	G	A	1.734e^-4	0.791	INTRON CG34354	TF binding site BDTNP1_TFBS_hb
3R	14448321	3R_14448321_SNP [dm3] 3R_18622599_SNP [dm6]	T	A	1.739e^-4	0.791	INTRON qin	TF binding site mE1_TFBS_inv
3R	17666123	3R_17666123_DEL [dm3] 3R_21840401_DEL [dm6]	TAG	T	1.741e^-4	0.791	INTERGENIC
2R	7022322	2R_7022322_SNP [dm3] 2R_11134817_SNP [dm6]	T	G	1.757e^-4	0.794	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	8943566	3R_8943566_SNP [dm3] 3R_13117844_SNP [dm6]	T	A	1.765e^-4	0.794	INTRON timeout
3L	2373748	3L_2373748_DEL [dm3] 3L_2373748_DEL [dm6]	AA	A	1.768e^-4	0.794	UTR_5_PRIME CG9004 UPSTREAM mRpL23 DOWNSTREAM CG8993	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7086928	3L_7086928_SNP [dm3] 3L_7093828_SNP [dm6]	C	A	1.768e^-4	0.794	UTR_3_PRIME Cpr65Ec UPSTREAM form3	TF binding site mE1_TFBS_HSA
3L	2527701	3L_2527701_INS [dm3] 3L_2527701_INS [dm6]	T	TAAATGAGACAC...	1.771e^-4	0.794	UPSTREAM CG32295 INTRON Spn
3L	12828639	3L_12828639_DEL [dm3] 3L_12835539_DEL [dm6]	TGT	T	1.775e^-4	0.794	INTRON CG10960	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	14043327	2L_14043327_SNP [dm3] 2L_14043327_SNP [dm6]	T	C	1.784e^-4	0.794	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_dl
3R	14448295	3R_14448295_DEL [dm3] 3R_18622573_DEL [dm6]	AA	A	1.785e^-4	0.794	INTRON qin	TF binding site mE1_TFBS_inv
3L	11041202	3L_11041202_SNP [dm3] 3L_11048102_SNP [dm6]	C	T	1.786e^-4	0.794	INTRON CG43693	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl mE1_TFBS_zfh1
3L	15568396	3L_15568396_SNP [dm3] 3L_15575296_SNP [dm6]	C	G	1.795e^-4	0.796	SYNONYMOUS_CODING CG6498	TF binding site mE1_TFBS_chinmo
X	17179004	X_17179004_SNP [dm3] X_17284971_SNP [dm6]	C	G	1.814e^-4	0.801	UPSTREAM CG8661 DOWNSTREAM Fim INTRON CG5445	insulator Insulator_Class_II.mE01
3L	6476731	3L_6476731_SNP [dm3] 3L_6483631_SNP [dm6]	T	A	1.815e^-4	0.801	INTRON CG42747	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	5904050	2L_5904050_SNP [dm3] 2L_5904050_SNP [dm6]	T	C	1.824e^-4	0.803	NON_SYNONYMOUS_CODING CG9021 DOWNSTREAM CR43808	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14655370	2R_14655370_SNP [dm3] 2R_18767865_SNP [dm6]	T	C	1.836e^-4	0.805	INTRON Mctp
3R	21888950	3R_21888950_SNP [dm3] 3R_26063228_SNP [dm6]	C	T	1.838e^-4	0.805	UPSTREAM CG14551 INTERGENIC
3R	5792523	3R_5792523_SNP [dm3] 3R_9966801_SNP [dm6]	T	G	1.843e^-4	0.806	INTRON Glut4EF
3L	16545318	3L_16545318_DEL [dm3] 3L_16552218_DEL [dm6]	TACATA	T	1.851e^-4	0.806	INTERGENIC
3R	5867832	3R_5867832_SNP [dm3] 3R_10042110_SNP [dm6]	G	A	1.852e^-4	0.806	INTRON Mical	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
3R	10297800	3R_10297800_SNP [dm3] 3R_14472078_SNP [dm6]	A	C	1.856e^-4	0.806	INTRON cv-c
2L	14101093	2L_14101093_SNP [dm3] 2L_14101093_SNP [dm6]	G	C	1.866e^-4	0.808	INTERGENIC
3R	23403689	3R_23403689_SNP [dm3] 3R_27577967_SNP [dm6]	C	G	1.878e^-4	0.811	INTRON wdb	TF binding site mE1_TFBS_sens
2L	17945212	2L_17945212_SNP [dm3] 2L_17945212_SNP [dm6]	A	C	1.889e^-4	0.812	INTERGENIC
2L	2763791	2L_2763791_SNP [dm3] 2L_2763791_SNP [dm6]	C	T	1.890e^-4	0.812	UTR_3_PRIME Trn-SR & 1 other DOWNSTREAM CG3077 & 1 other
3R	17666127	3R_17666127_SNP [dm3] 3R_21840405_SNP [dm6]	T	A	1.893e^-4	0.812	INTERGENIC
3L	12968113	3L_12968113_SNP [dm3] 3L_12975013_SNP [dm6]	G	A	1.902e^-4	0.812	INTERGENIC
3R	5789115	3R_5789115_SNP [dm3] 3R_9963393_SNP [dm6]	T	A	1.904e^-4	0.812	INTRON Glut4EF
3R	16803036	3R_16803036_SNP [dm3] 3R_20977314_SNP [dm6]	C	T	1.905e^-4	0.812	UPSTREAM Calx INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19142421	X_19142421_SNP [dm3] X_19248388_SNP [dm6]	T	C	1.921e^-4	0.815	UPSTREAM Hs3st-B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10425971	2R_10425971_SNP [dm3] 2R_14538466_SNP [dm6]	A	G	1.922e^-4	0.815	INTRON ttv
2L	17926115	2L_17926115_SNP [dm3] 2L_17926115_SNP [dm6]	C	G	1.931e^-4	0.815	INTERGENIC
3L	1503155	3L_1503155_SNP [dm3] 3L_1503155_SNP [dm6]	G	T	1.937e^-4	0.815	UPSTREAM pUf68 DOWNSTREAM cue INTRON Psa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2L	5904911	2L_5904911_SNP [dm3] 2L_5904911_SNP [dm6]	C	G	1.942e^-4	0.815	UPSTREAM CG9021 DOWNSTREAM CR43808 INTERGENIC
2L	11705063	2L_11705063_SNP [dm3] 2L_11705063_SNP [dm6]	T	A	1.943e^-4	0.815	INTERGENIC
3L	15631508	3L_15631508_SNP [dm3] 3L_15638408_SNP [dm6]	C	T	1.944e^-4	0.815	INTRON comm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	16803208	3R_16803208_SNP [dm3] 3R_20977486_SNP [dm6]	G	A	1.946e^-4	0.815	UPSTREAM Calx INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1690583	2R_1690583_SNP [dm3] 2R_5803078_SNP [dm6]	T	G	1.967e^-4	0.815	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	15338294	3R_15338294_SNP [dm3] 3R_19512572_SNP [dm6]	A	C	1.971e^-4	0.815	INTRON Dys
3R	8959921	3R_8959921_SNP [dm3] 3R_13134199_SNP [dm6]	C	G	1.975e^-4	0.815	INTRON timeout & 2 others
3L	3806552	3L_3806552_SNP [dm3] 3L_3806552_SNP [dm6]	T	C	1.984e^-4	0.815	UPSTREAM IntS10 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	10430468	2R_10430468_SNP [dm3] 2R_14542963_SNP [dm6]	T	A	1.985e^-4	0.815	INTRON ttv
3L	11341755	3L_11341755_DEL [dm3] 3L_11348655_DEL [dm6]	GGTTTGT	G	1.991e^-4	0.815	DOWNSTREAM CR45251 INTERGENIC
2L	10169834	2L_10169834_SNP [dm3] 2L_10169834_SNP [dm6]	A	C	1.994e^-4	0.815	INTRON CG44153
3R	6995018	3R_6995018_SNP [dm3] 3R_11169296_SNP [dm6]	A	G	2.031e^-4	0.815	SYNONYMOUS_CODING Ugt35b	TF binding site mE1_TFBS_inv
2R	16382690	2R_16382690_SNP [dm3] 2R_20495185_SNP [dm6]	A	G	2.035e^-4	0.815	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9151132	3R_9151132_SNP [dm3] 3R_13325410_SNP [dm6]	C	T	2.046e^-4	0.815	INTERGENIC
3L	10244313	3L_10244313_SNP [dm3] 3L_10251213_SNP [dm6]	C	T	2.057e^-4	0.815	INTERGENIC
X	5529817	X_5529817_SNP [dm3] X_5635784_SNP [dm6]	A	G	2.061e^-4	0.815	INTRON CG42492	TF binding site BDTNP1_TFBS_dl
3L	12712961	3L_12712961_INS [dm3] 3L_12719861_INS [dm6]	C	CC	2.061e^-4	0.815	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3R	9476357	3R_9476357_SNP [dm3] 3R_13650635_SNP [dm6]	T	G	2.063e^-4	0.815	INTRON rin
2L	2763286	2L_2763286_SNP [dm3] 2L_2763286_SNP [dm6]	T	A	2.066e^-4	0.815	UTR_3_PRIME Trn-SR DOWNSTREAM CG3077
3L	18543864	3L_18543864_SNP [dm3] 3L_18550764_SNP [dm6]	A	T	2.076e^-4	0.815	INTERGENIC
2L	17926032	2L_17926032_SNP [dm3] 2L_17926032_SNP [dm6]	A	T	2.082e^-4	0.815	INTERGENIC
2L	17926033	2L_17926033_DEL [dm3] 2L_17926033_DEL [dm6]	TAAAGCCACGTCAGCTTAAA...	T	2.082e^-4	0.815	INTERGENIC
3R	5827634	3R_5827634_SNP [dm3] 3R_10001912_SNP [dm6]	A	T	2.087e^-4	0.815	UTR_3_PRIME Mical UPSTREAM CG5359
2L	2940219	2L_2940219_SNP [dm3] 2L_2940219_SNP [dm6]	G	A	2.090e^-4	0.815	INTRON lilli
2L	14114574	2L_14114574_SNP [dm3] 2L_14114574_SNP [dm6]	T	A	2.092e^-4	0.815	INTERGENIC
3R	7000821	3R_7000821_SNP [dm3] 3R_11175099_SNP [dm6]	G	T	2.095e^-4	0.815	UPSTREAM Ugt86Dh INTRON Ugt86Dj
3R	9909155	3R_9909155_SNP [dm3] 3R_14083433_SNP [dm6]	C	A	2.095e^-4	0.815	INTRON foxo
3R	20132639	3R_20132639_SNP [dm3] 3R_24306917_SNP [dm6]	G	A	2.095e^-4	0.815	INTRON crb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3802096	3L_3802096_SNP [dm3] 3L_3802096_SNP [dm6]	T	G	2.096e^-4	0.815	UPSTREAM CG32264 INTRON CG32264
X	5921367	X_5921367_SNP [dm3] X_6027334_SNP [dm6]	T	G	2.096e^-4	0.815	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	9920300	3L_9920300_SNP [dm3] 3L_9927200_SNP [dm6]	T	C	2.097e^-4	0.815	UPSTREAM CG34356 INTRON CG34356
3R	14860892	3R_14860892_SNP [dm3] 3R_19035170_SNP [dm6]	G	C	2.098e^-4	0.815	INTRON CG6026
3R	20632574	3R_20632574_SNP [dm3] 3R_24806852_SNP [dm6]	A	G	2.105e^-4	0.815	SYNONYMOUS_CODING CG5807 UPSTREAM CG6980	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9036125	3R_9036125_SNP [dm3] 3R_13210403_SNP [dm6]	A	G	2.108e^-4	0.815	INTRON CG8483
3R	2472706	3R_2472706_SNP [dm3] 3R_6646984_SNP [dm6]	A	G	2.114e^-4	0.815	UTR_5_PRIME Taf1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	13637036	3R_13637036_SNP [dm3] 3R_17811314_SNP [dm6]	G	A	2.135e^-4	0.815	UPSTREAM tinc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv
2R	13683939	2R_13683939_SNP [dm3] 2R_17796434_SNP [dm6]	A	C	2.140e^-4	0.815	INTRON Dhit	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	4242862	3R_4242862_SNP [dm3] 3R_8417140_SNP [dm6]	C	T	2.149e^-4	0.815	INTRON CG45263
3R	5687444	3R_5687444_DEL [dm3] 3R_9861722_DEL [dm6]	GG	G	2.160e^-4	0.815	INTRON Teh1
2L	14410277	2L_14410277_SNP [dm3] 2L_14410277_SNP [dm6]	G	A	2.167e^-4	0.815	UPSTREAM elB DOWNSTREAM CR44733 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	7051560	2L_7051560_SNP [dm3] 2L_7051560_SNP [dm6]	T	C	2.169e^-4	0.815	SYNONYMOUS_CODING milt	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	1359753	3L_1359753_SNP [dm3] 3L_1359753_SNP [dm6]	C	T	2.184e^-4	0.815	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8824762	3L_8824762_SNP [dm3] 3L_8831662_SNP [dm6]	T	C	2.204e^-4	0.815	INTRON dally
3L	9305940	3L_9305940_SNP [dm3] 3L_9312840_SNP [dm6]	C	A	2.206e^-4	0.815	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3815975	2L_3815975_SNP [dm3] 2L_3815975_SNP [dm6]	T	C	2.209e^-4	0.815	DOWNSTREAM CR44076 INTERGENIC	regulatory region REDfly_CRMs
3L	5426563	3L_5426563_SNP [dm3] 3L_5433463_SNP [dm6]	T	A	2.211e^-4	0.815	INTRON CG34391
3L	22580663	3L_22580663_SNP [dm3] 3L_22587563_SNP [dm6]	G	T	2.215e^-4	0.815	INTRON CG14459	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10952400	3L_10952400_SNP [dm3] 3L_10959300_SNP [dm6]	G	T	2.216e^-4	0.815	EXON CR45248	TF binding site BDTNP1_TFBS_dl
2L	903994	2L_903994_SNP [dm3] 2L_903994_SNP [dm6]	C	G	2.220e^-4	0.815	UPSTREAM CR45261 INTERGENIC
3L	9234238	3L_9234238_SNP [dm3] 3L_9241138_SNP [dm6]	C	G	2.222e^-4	0.815	INTERGENIC
2L	5459838	2L_5459838_SNP [dm3] 2L_5459838_SNP [dm6]	A	G	2.222e^-4	0.815	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	6993432	3R_6993432_SNP [dm3] 3R_11167710_SNP [dm6]	C	T	2.223e^-4	0.815	SPLICE_SITE_DONOR Ugt86De DOWNSTREAM Ugt35b INTRON Ugt86De
3L	12828776	3L_12828776_SNP [dm3] 3L_12835676_SNP [dm6]	G	T	2.226e^-4	0.815	INTRON CG10960	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	10039855	2L_10039855_SNP [dm3] 2L_10039855_SNP [dm6]	T	C	2.227e^-4	0.815	DOWNSTREAM obst-B INTERGENIC
3L	14297220	3L_14297220_SNP [dm3] 3L_14304120_SNP [dm6]	C	T	2.233e^-4	0.815	INTRON fz	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	17906943	3R_17906943_SNP [dm3] 3R_22081221_SNP [dm6]	A	C	2.239e^-4	0.815	INTRON CG13408	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	17907051	3R_17907051_SNP [dm3] 3R_22081329_SNP [dm6]	A	T	2.241e^-4	0.815	INTRON CG13408	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	7513386	3R_7513386_SNP [dm3] 3R_11687664_SNP [dm6]	A	G	2.244e^-4	0.815	DOWNSTREAM CG6908 INTRON CG6834	TF binding site BDTNP1_TFBS_z
3R	5830188	3R_5830188_SNP [dm3] 3R_10004466_SNP [dm6]	C	A	2.245e^-4	0.815	INTRON Mical	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	8363811	3R_8363811_SNP [dm3] 3R_12538089_SNP [dm6]	G	A	2.245e^-4	0.815	INTRON Octbeta3R
3L	4053483	3L_4053483_SNP [dm3] 3L_4053483_SNP [dm6]	T	G	2.248e^-4	0.815	INTRON CG1136
2L	11676566	2L_11676566_SNP [dm3] 2L_11676566_SNP [dm6]	A	G	2.251e^-4	0.815	INTERGENIC
X	8282386	X_8282386_SNP [dm3] X_8388353_SNP [dm6]	A	G	2.265e^-4	0.815	SYNONYMOUS_CODING CG1387	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2764027	2L_2764027_SNP [dm3] 2L_2764027_SNP [dm6]	A	T	2.267e^-4	0.815	UTR_3_PRIME CG3077 DOWNSTREAM CG3077 & 1 other
3L	1003968	3L_1003968_SNP [dm3] 3L_1003968_SNP [dm6]	G	T	2.280e^-4	0.815	INTRON trio	TF binding site mE1_TFBS_chinmo
3R	9477837	3R_9477837_SNP [dm3] 3R_13652115_SNP [dm6]	C	T	2.295e^-4	0.815	UTR_3_PRIME rin
3L	16929274	3L_16929274_SNP [dm3] 3L_16936174_SNP [dm6]	C	T	2.300e^-4	0.815	UPSTREAM CG11905 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	5961016	2L_5961016_SNP [dm3] 2L_5961016_SNP [dm6]	A	T	2.316e^-4	0.815	UPSTREAM Vm26Aa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	10752259	X_10752259_SNP [dm3] X_10858226_SNP [dm6]	A	T	2.317e^-4	0.815	UPSTREAM sofe INTRON CG2186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15735007	3L_15735007_SNP [dm3] 3L_15741907_SNP [dm6]	G	C	2.323e^-4	0.815	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	14955036	3R_14955036_SNP [dm3] 3R_19129314_SNP [dm6]	G	A	2.334e^-4	0.815	SYNONYMOUS_CODING CG6040	TF binding site mE1_TFBS_chinmo
3R	9151030	3R_9151030_SNP [dm3] 3R_13325308_SNP [dm6]	G	C	2.337e^-4	0.815	INTERGENIC
3L	9060360	3L_9060360_SNP [dm3] 3L_9067260_SNP [dm6]	A	T	2.352e^-4	0.815	UTR_3_PRIME CG4911	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	14410085	2L_14410085_SNP [dm3] 2L_14410085_SNP [dm6]	A	T	2.352e^-4	0.815	UPSTREAM elB DOWNSTREAM CR44733 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
3R	26465500	3R_26465500_SNP [dm3] 3R_30639778_SNP [dm6]	C	A	2.357e^-4	0.815	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	9341063	2R_9341063_SNP [dm3] 2R_13453558_SNP [dm6]	T	C	2.357e^-4	0.815	DOWNSTREAM arr & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2R	1190045	2R_1190045_SNP [dm3] 2R_5302540_SNP [dm6]	A	C	2.366e^-4	0.815	INTERGENIC	transposable element FlyBase
2L	16893139	2L_16893139_SNP [dm3] 2L_16893139_SNP [dm6]	G	A	2.368e^-4	0.815	NON_SYNONYMOUS_CODING tweek	TF binding site mE1_TFBS_sens
3L	6875394	3L_6875394_SNP [dm3] 3L_6882294_SNP [dm6]	G	A	2.368e^-4	0.815	INTERGENIC
2L	14410001	2L_14410001_SNP [dm3] 2L_14410001_SNP [dm6]	G	A	2.380e^-4	0.815	UPSTREAM elB EXON CR44733	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2L	3749674	2L_3749674_SNP [dm3] 2L_3749674_SNP [dm6]	C	A	2.381e^-4	0.815	INTRON CG10019
2R	2022581	2R_2022581_SNP [dm3] 2R_6135076_SNP [dm6]	G	A	2.383e^-4	0.815	INTRON EcR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	4306266	2L_4306266_SNP [dm3] 2L_4306266_SNP [dm6]	C	G	2.384e^-4	0.815	DOWNSTREAM tutl INTRON tutl	TF binding site mE1_TFBS_chinmo
3R	10365143	3R_10365143_SNP [dm3] 3R_14539421_SNP [dm6]	G	A	2.385e^-4	0.815	INTRON Pde6
2R	16487275	2R_16487275_SNP [dm3] 2R_20599770_SNP [dm6]	C	G	2.388e^-4	0.815	INTRON bl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9633674	X_9633674_SNP [dm3] X_9739641_SNP [dm6]	C	A	2.389e^-4	0.815	INTRON Sp1	TF binding site BDTNP1_TFBS_twi
3L	10270643	3L_10270643_INS [dm3] 3L_10277543_INS [dm6]	A	AAACT	2.391e^-4	0.815	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	24296809	3R_24296809_SNP [dm3] 3R_28471087_SNP [dm6]	C	T	2.397e^-4	0.815	INTRON beat-VI
3L	15762295	3L_15762295_SNP [dm3] 3L_15769195_SNP [dm6]	C	G	2.397e^-4	0.815	INTERGENIC
3L	4932698	3L_4932698_SNP [dm3] 3L_4932698_SNP [dm6]	G	A	2.398e^-4	0.815	INTERGENIC	regulatory region REDfly_CRMs
3R	21657867	3R_21657867_SNP [dm3] 3R_25832145_SNP [dm6]	T	A	2.399e^-4	0.815	UPSTREAM alpha4GT2 & 1 other INTERGENIC
2L	12405123	2L_12405123_SNP [dm3] 2L_12405123_SNP [dm6]	G	A	2.406e^-4	0.815	UPSTREAM vir-1 INTRON vir-1
2L	14114584	2L_14114584_SNP [dm3] 2L_14114584_SNP [dm6]	C	G	2.412e^-4	0.815	INTERGENIC
3R	5842381	3R_5842381_SNP [dm3] 3R_10016659_SNP [dm6]	A	G	2.422e^-4	0.815	SYNONYMOUS_CODING Mical INTRON Mical
3R	24349451	3R_24349451_SNP [dm3] 3R_28523729_SNP [dm6]	G	A	2.427e^-4	0.815	INTRON Ppn	TF binding site mE1_TFBS_chinmo
X	16942584	X_16942584_SNP [dm3] X_17048551_SNP [dm6]	T	C	2.428e^-4	0.815	INTRON CG45002
X	16942585	X_16942585_SNP [dm3] X_17048552_SNP [dm6]	T	C	2.428e^-4	0.815	INTRON CG45002
3L	8910621	3L_8910621_SNP [dm3] 3L_8917521_SNP [dm6]	C	G	2.441e^-4	0.815	INTRON Tsp66E
3L	2364502	3L_2364502_SNP [dm3] 3L_2364502_SNP [dm6]	G	A	2.447e^-4	0.815	INTERGENIC
X	13122398	X_13122398_DEL [dm3] X_13228365_DEL [dm6]	TATTGTTTAATATTT...	A	2.450e^-4	0.815	INTRON mew	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21677317	3R_21677317_SNP [dm3] 3R_25851595_SNP [dm6]	C	A	2.453e^-4	0.815	UPSTREAM CG5886 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	11676482	2L_11676482_SNP [dm3] 2L_11676482_SNP [dm6]	T	G	2.458e^-4	0.815	INTERGENIC
2L	8778760	2L_8778760_SNP [dm3] 2L_8778760_SNP [dm6]	G	A	2.460e^-4	0.815	SYNONYMOUS_CODING CG9468	TF binding site mE1_TFBS_cad
3L	10975857	3L_10975857_SNP [dm3] 3L_10982757_SNP [dm6]	T	C	2.461e^-4	0.815	SYNONYMOUS_CODING klu	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	9740575	3R_9740575_SNP [dm3] 3R_13914853_SNP [dm6]	A	C	2.476e^-4	0.815	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17922604	2L_17922604_SNP [dm3] 2L_17922604_SNP [dm6]	T	C	2.484e^-4	0.815	INTERGENIC
2L	6373216	2L_6373216_SNP [dm3] 2L_6373216_SNP [dm6]	G	T	2.490e^-4	0.815	UPSTREAM slam INTRON slam	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5828047	3R_5828047_SNP [dm3] 3R_10002325_SNP [dm6]	C	T	2.497e^-4	0.815	UTR_3_PRIME Mical
3L	16897538	3L_16897538_SNP [dm3] 3L_16904438_SNP [dm6]	G	A	2.507e^-4	0.815	SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	6363084	2L_6363084_SNP [dm3] 2L_6363084_SNP [dm6]	T	C	2.513e^-4	0.815	INTERGENIC
3R	26022998	3R_26022998_SNP [dm3] 3R_30197276_SNP [dm6]	G	A	2.514e^-4	0.815	SYNONYMOUS_CODING CG9743	TF binding site mE1_TFBS_chinmo
2L	22036096	2L_22036096_SNP [dm3] 2L_22036096_SNP [dm6]	T	A	2.518e^-4	0.815	INTERGENIC
2R	12458546	2R_12458546_DEL [dm3] 2R_16571041_DEL [dm6]	CA	C	2.522e^-4	0.815	UTR_5_PRIME RpS15 DOWNSTREAM CG4945 INTRON RpS15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	11385822	3L_11385822_SNP [dm3] 3L_11392722_SNP [dm6]	A	C	2.532e^-4	0.815	INTERGENIC
2R	16429744	2R_16429744_SNP [dm3] 2R_20542239_SNP [dm6]	G	A	2.534e^-4	0.815	UPSTREAM CR44652 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12546082	3L_12546082_SNP [dm3] 3L_12552982_SNP [dm6]	T	C	2.538e^-4	0.815	INTRON sowah
3R	9195213	3R_9195213_SNP [dm3] 3R_13369491_SNP [dm6]	G	A	2.541e^-4	0.815	UPSTREAM CheA87a DOWNSTREAM Dic1 & 1 other INTERGENIC
2R	5107907	2R_5107907_SNP [dm3] 2R_9220402_SNP [dm6]	C	A	2.553e^-4	0.815	INTERGENIC
3R	20613006	3R_20613006_SNP [dm3] 3R_24787284_SNP [dm6]	G	T	2.554e^-4	0.815	UPSTREAM CG5805 & 1 other DOWNSTREAM CG13634 INTRON CG5805	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8334432	2L_8334432_SNP [dm3] 2L_8334432_SNP [dm6]	A	G	2.559e^-4	0.815	INTERGENIC
3R	5727228	3R_5727228_SNP [dm3] 3R_9901506_SNP [dm6]	T	A	2.559e^-4	0.815	INTRON Glut4EF
3L	10963749	3L_10963749_SNP [dm3] 3L_10970649_SNP [dm6]	C	G	2.566e^-4	0.815	INTERGENIC
2L	4193434	2L_4193434_SNP [dm3] 2L_4193434_SNP [dm6]	G	A	2.568e^-4	0.815	SYNONYMOUS_CODING CG3714
2L	5905041	2L_5905041_SNP [dm3] 2L_5905041_SNP [dm6]	T	C	2.570e^-4	0.815	UPSTREAM CG9021 EXON CR43808
2L	17029485	2L_17029485_SNP [dm3] 2L_17029485_SNP [dm6]	G	C	2.586e^-4	0.815	INTERGENIC
2L	16063744	2L_16063744_SNP [dm3] 2L_16063744_SNP [dm6]	T	C	2.590e^-4	0.815	INTRON beat-Ia	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	17007385	2R_17007385_SNP [dm3] 2R_21119880_SNP [dm6]	A	G	2.598e^-4	0.815	SYNONYMOUS_CODING CG9394 INTRON ktub	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15367828	3R_15367828_SNP [dm3] 3R_19542106_SNP [dm6]	A	T	2.598e^-4	0.815	INTRON Dys
X	8327851	X_8327851_SNP [dm3] X_8433818_SNP [dm6]	A	T	2.618e^-4	0.815	UPSTREAM CG32712 DOWNSTREAM CG12125 & 1 other INTERGENIC
2R	4549908	2R_4549908_SNP [dm3] 2R_8662403_SNP [dm6]	G	A	2.627e^-4	0.815	SYNONYMOUS_CODING ptc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	17200691	2L_17200691_SNP [dm3] 2L_17200691_SNP [dm6]	G	A	2.632e^-4	0.815	INTRON beat-IIIc
3L	4877616	3L_4877616_SNP [dm3] 3L_4877616_SNP [dm6]	G	A	2.642e^-4	0.815	INTRON CG17150
3R	9195078	3R_9195078_SNP [dm3] 3R_13369356_SNP [dm6]	G	T	2.644e^-4	0.815	UPSTREAM CheA87a DOWNSTREAM Dic1 & 1 other INTERGENIC
2L	3749713	2L_3749713_SNP [dm3] 2L_3749713_SNP [dm6]	T	A	2.648e^-4	0.815	INTRON CG10019
3R	20904173	3R_20904173_SNP [dm3] 3R_25078451_SNP [dm6]	C	T	2.652e^-4	0.815	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	10714405	2L_10714405_SNP [dm3] 2L_10714405_SNP [dm6]	C	T	2.652e^-4	0.815	INTERGENIC
3R	8348610	3R_8348610_SNP [dm3] 3R_12522888_SNP [dm6]	T	C	2.655e^-4	0.815	INTRON Octbeta3R
2L	7758975	2L_7758975_SNP [dm3] 2L_7758975_SNP [dm6]	C	T	2.657e^-4	0.815	INTRON CG7196
3R	19078967	3R_19078967_SNP [dm3] 3R_23253245_SNP [dm6]	A	G	2.663e^-4	0.815	SYNONYMOUS_CODING EloA
3R	26174550	3R_26174550_SNP [dm3] 3R_30348828_SNP [dm6]	A	T	2.664e^-4	0.815	INTRON hdc
X	14220913	X_14220913_SNP [dm3] X_14326880_SNP [dm6]	T	C	2.667e^-4	0.815	INTRON dpr8	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4726336	2L_4726336_SNP [dm3] 2L_4726336_SNP [dm6]	G	A	2.669e^-4	0.815	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	21083324	3R_21083324_SNP [dm3] 3R_25257602_SNP [dm6]	T	A	2.672e^-4	0.815	NON_SYNONYMOUS_CODING Nup358	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10285082	X_10285082_INS [dm3] X_10391049_INS [dm6]	C	CT	2.676e^-4	0.815	INTRON flw
2L	6344311	2L_6344311_SNP [dm3] 2L_6344311_SNP [dm6]	G	A	2.681e^-4	0.815	INTRON Cpr	TF binding site mE1_TFBS_HSA
3R	6953253	3R_6953253_SNP [dm3] 3R_11127531_SNP [dm6]	C	A	2.689e^-4	0.815	NON_SYNONYMOUS_CODING Ugt86Dd
2L	13074590	2L_13074590_DEL [dm3] 2L_13074590_DEL [dm6]	TC	G	2.689e^-4	0.815	INTERGENIC	TF binding site mE1_TFBS_inv
3R	6423034	3R_6423034_SNP [dm3] 3R_10597312_SNP [dm6]	T	G	2.694e^-4	0.815	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11787281	2R_11787281_SNP [dm3] 2R_15899776_SNP [dm6]	T	C	2.702e^-4	0.815	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7053593	3R_7053593_SNP [dm3] 3R_11227871_SNP [dm6]	A	C	2.704e^-4	0.815	NON_SYNONYMOUS_CODING CG17726 DOWNSTREAM GCC88	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
4	305857	4_305857_SNP [dm3] 4_285231_SNP [dm6]	C	T	2.712e^-4	0.815	INTRON Syt7	transposable element FlyBase
2L	14408575	2L_14408575_SNP [dm3] 2L_14408575_SNP [dm6]	C	T	2.714e^-4	0.815	UTR_5_PRIME elB
2L	16594265	2L_16594265_SNP [dm3] 2L_16594265_SNP [dm6]	A	C	2.716e^-4	0.815	INTRON CG42389
3R	13276632	3R_13276632_SNP [dm3] 3R_17450910_SNP [dm6]	A	C	2.718e^-4	0.815	INTERGENIC
2L	903933	2L_903933_SNP [dm3] 2L_903933_SNP [dm6]	A	G	2.719e^-4	0.815	UPSTREAM CR45261 INTERGENIC
3R	17498384	3R_17498384_SNP [dm3] 3R_21672662_SNP [dm6]	G	A	2.721e^-4	0.815	UTR_3_PRIME CG31176 UPSTREAM DNApol-alpha180
3R	22417190	3R_22417190_SNP [dm3] 3R_26591468_SNP [dm6]	T	A	2.726e^-4	0.815	INTRON scrib
2R	19372944	2R_19372944_SNP [dm3] 2R_23485421_SNP [dm6]	C	G	2.727e^-4	0.815	INTRON CG43795
3R	5847869	3R_5847869_SNP [dm3] 3R_10022147_SNP [dm6]	C	G	2.730e^-4	0.815	UPSTREAM Mical DOWNSTREAM CG31407 INTRON Mical	TF binding site mE1_TFBS_inv
3R	5863712	3R_5863712_SNP [dm3] 3R_10037990_SNP [dm6]	G	A	2.730e^-4	0.815	INTRON Mical
3L	21616732	3L_21616732_SNP [dm3] 3L_21623632_SNP [dm6]	T	C	2.731e^-4	0.815	INTRON CG7166
2L	5904331	2L_5904331_SNP [dm3] 2L_5904331_SNP [dm6]	G	A	2.731e^-4	0.815	SYNONYMOUS_CODING CG9021 DOWNSTREAM CR43808	TF binding site mE1_TFBS_HSA
3R	24034256	3R_24034256_SNP [dm3] 3R_28208534_SNP [dm6]	T	C	2.738e^-4	0.815	INTRON CG34354	TF binding site mE1_TFBS_chinmo
3L	10462850	3L_10462850_SNP [dm3] 3L_10469750_SNP [dm6]	T	A	2.740e^-4	0.815	DOWNSTREAM S-Lap3 INTERGENIC
3R	5980255	3R_5980255_SNP [dm3] 3R_10154533_SNP [dm6]	C	G	2.748e^-4	0.815	INTRON Invadolysin
2L	2765447	2L_2765447_SNP [dm3] 2L_2765447_SNP [dm6]	G	C	2.751e^-4	0.815	UPSTREAM aph-1 INTRON CG3077	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	6605337	2L_6605337_SNP [dm3] 2L_6605337_SNP [dm6]	C	G	2.762e^-4	0.815	INTERGENIC
X	5130585	X_5130585_SNP [dm3] X_5236552_SNP [dm6]	G	A	2.762e^-4	0.815	NON_SYNONYMOUS_CODING rg UTR_3_PRIME CG15465
X	18438146	X_18438146_SNP [dm3] X_18544113_SNP [dm6]	T	G	2.764e^-4	0.815	INTRON Bx
3L	9561247	3L_9561247_SNP [dm3] 3L_9568147_SNP [dm6]	G	T	2.771e^-4	0.815	INTRON CG42673
X	5130619	X_5130619_SNP [dm3] X_5236586_SNP [dm6]	G	A	2.775e^-4	0.815	NON_SYNONYMOUS_CODING rg UTR_3_PRIME CG15465
2L	18178579	2L_18178579_INS [dm3] 2L_18178579_INS [dm6]	T	TT	2.790e^-4	0.815	INTRON CG42750
3L	6496640	3L_6496640_SNP [dm3] 3L_6503540_SNP [dm6]	T	G	2.795e^-4	0.815	INTRON sfl	TF binding site BDTNP1_TFBS_dl
3L	9534705	3L_9534705_SNP [dm3] 3L_9541605_SNP [dm6]	G	T	2.800e^-4	0.815	DOWNSTREAM Ir67a INTERGENIC
2L	17050438	2L_17050438_SNP [dm3] 2L_17050438_SNP [dm6]	G	T	2.800e^-4	0.815	INTERGENIC
3L	2990227	3L_2990227_SNP [dm3] 3L_2990227_SNP [dm6]	G	A	2.806e^-4	0.815	INTERGENIC
2L	11676603	2L_11676603_INS [dm3] 2L_11676603_INS [dm6]	A	AA	2.807e^-4	0.815	INTERGENIC
2L	16063746	2L_16063746_SNP [dm3] 2L_16063746_SNP [dm6]	G	C	2.809e^-4	0.815	INTRON beat-Ia	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	10228603	3L_10228603_DEL [dm3] 3L_10235503_DEL [dm6]	AT	C	2.810e^-4	0.815	INTERGENIC
3L	15806150	3L_15806150_SNP [dm3] 3L_15813050_SNP [dm6]	C	A	2.812e^-4	0.815	INTRON fwe
2L	17251638	2L_17251638_DEL [dm3] 2L_17251638_DEL [dm6]	AA	A	2.822e^-4	0.815	INTRON beat-IIIc
3L	10270639	3L_10270639_SNP [dm3] 3L_10277539_SNP [dm6]	C	T	2.826e^-4	0.815	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	22794448	3R_22794448_SNP [dm3] 3R_26968726_SNP [dm6]	A	G	2.828e^-4	0.815	INTRON CG5521
X	12910742	X_12910742_SNP [dm3] X_13016709_SNP [dm6]	T	A	2.844e^-4	0.815	INTRON rad
3R	5842615	3R_5842615_SNP [dm3] 3R_10016893_SNP [dm6]	T	C	2.847e^-4	0.815	INTRON Mical
X	20725473	X_20725473_SNP [dm3] X_20854446_SNP [dm6]	T	G	2.854e^-4	0.815	INTRON shakB
X	18903318	X_18903318_SNP [dm3] X_19009285_SNP [dm6]	C	A	2.854e^-4	0.815	INTRON CG43759
X	8401759	X_8401759_SNP [dm3] X_8507726_SNP [dm6]	A	G	2.866e^-4	0.815	INTRON CG33181
3R	8348621	3R_8348621_SNP [dm3] 3R_12522899_SNP [dm6]	G	T	2.871e^-4	0.815	INTRON Octbeta3R
2L	14414209	2L_14414209_SNP [dm3] 2L_14414209_SNP [dm6]	A	T	2.875e^-4	0.815	INTERGENIC
2R	3069716	2R_3069716_SNP [dm3] 2R_7182211_SNP [dm6]	G	C	2.878e^-4	0.815	SYNONYMOUS_CODING CG30385 UPSTREAM CG30384 INTRON pk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	17502802	3L_17502802_SNP [dm3] 3L_17509702_SNP [dm6]	C	T	2.879e^-4	0.815	SYNONYMOUS_CODING Oatp74D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	18405481	X_18405481_SNP [dm3] X_18511448_SNP [dm6]	C	G	2.880e^-4	0.815	INTRON Ggt-1
3R	12569722	3R_12569722_SNP [dm3] 3R_16744000_SNP [dm6]	T	C	2.886e^-4	0.815	INTRON bxd EXON bxd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9904327	2R_9904327_SNP [dm3] 2R_14016822_SNP [dm6]	A	T	2.890e^-4	0.815	INTRON mam
2L	6990019	2L_6990019_SNP [dm3] 2L_6990019_SNP [dm6]	A	T	2.892e^-4	0.815	INTRON uif
3R	14448271	3R_14448271_SNP [dm3] 3R_18622549_SNP [dm6]	C	T	2.898e^-4	0.815	INTRON qin	TF binding site mE1_TFBS_inv
3R	7001701	3R_7001701_SNP [dm3] 3R_11175979_SNP [dm6]	C	A	2.899e^-4	0.815	UPSTREAM Ugt86Dj INTRON Ugt86Dh
3L	22963383	3L_22963383_SNP [dm3] 3L_22970283_SNP [dm6]	A	C	2.903e^-4	0.815	INTERGENIC
3R	5788514	3R_5788514_SNP [dm3] 3R_9962792_SNP [dm6]	C	T	2.907e^-4	0.815	INTRON Glut4EF
2R	7392205	2R_7392205_SNP [dm3] 2R_11504700_SNP [dm6]	T	A	2.907e^-4	0.815	INTRON inv
3R	6995741	3R_6995741_SNP [dm3] 3R_11170019_SNP [dm6]	A	G	2.907e^-4	0.815	SYNONYMOUS_CODING Ugt35b DOWNSTREAM Ugt35a
3L	8006632	3L_8006632_SNP [dm3] 3L_8013532_SNP [dm6]	T	A	2.909e^-4	0.815	INTRON nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	8169099	2L_8169099_SNP [dm3] 2L_8169099_SNP [dm6]	C	G	2.913e^-4	0.815	INTRON Piezo
3L	14640421	3L_14640421_SNP [dm3] 3L_14647321_SNP [dm6]	G	T	2.918e^-4	0.815	INTRON dlp
2L	11244599	2L_11244599_DEL [dm3] 2L_11244599_DEL [dm6]	TCTTTCGCATCCCAATGACT...	T	2.926e^-4	0.815	INTRON ab	TF binding site BDTNP1_TFBS_twi
X	15400837	X_15400837_DEL [dm3] X_15506804_DEL [dm6]	TGCAGTTGCT	T	2.930e^-4	0.815	INTRON Gmap	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5767031	3R_5767031_SNP [dm3] 3R_9941309_SNP [dm6]	C	T	2.932e^-4	0.815	INTRON Glut4EF
3R	17998422	3R_17998422_SNP [dm3] 3R_22172700_SNP [dm6]	G	T	2.938e^-4	0.815	INTRON SKIP	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA
2L	17833460	2L_17833460_SNP [dm3] 2L_17833460_SNP [dm6]	C	G	2.945e^-4	0.815	INTRON CadN2	TF binding site mE1_TFBS_HSA
2R	13088093	2R_13088093_SNP [dm3] 2R_17200588_SNP [dm6]	G	T	2.951e^-4	0.815	INTERGENIC
2L	4197986	2L_4197986_SNP [dm3] 2L_4197986_SNP [dm6]	T	C	2.953e^-4	0.815	UTR_5_PRIME CG3714 UPSTREAM CG3714 DOWNSTREAM ft	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	14448377	3R_14448377_SNP [dm3] 3R_18622655_SNP [dm6]	C	T	2.957e^-4	0.815	INTRON qin	TF binding site mE1_TFBS_inv
3R	20615707	3R_20615707_SNP [dm3] 3R_24789985_SNP [dm6]	A	C	2.965e^-4	0.815	START_GAINED CG13634 UTR_5_PRIME CG13634 INTRON Ets96B
3L	15864893	3L_15864893_SNP [dm3] 3L_15871793_SNP [dm6]	T	G	2.969e^-4	0.815	INTRON pHCl
X	14339776	X_14339776_SNP [dm3] X_14445743_SNP [dm6]	T	A	2.972e^-4	0.815	INTRON dpr8
2R	16181019	2R_16181019_SNP [dm3] 2R_20293514_SNP [dm6]	A	T	2.972e^-4	0.815	UPSTREAM CR44639 DOWNSTREAM CR44638 INTERGENIC
2R	5224101	2R_5224101_SNP [dm3] 2R_9336596_SNP [dm6]	G	A	2.974e^-4	0.815	INTRON CG13954 & 1 other
2R	14655259	2R_14655259_SNP [dm3] 2R_18767754_SNP [dm6]	A	T	2.975e^-4	0.815	INTRON Mctp
3L	9982765	3L_9982765_SNP [dm3] 3L_9989665_SNP [dm6]	T	G	2.979e^-4	0.815	INTRON dpr6
3L	16545312	3L_16545312_INS [dm3] 3L_16552212_INS [dm6]	A	ACAATAGT	2.982e^-4	0.815	INTERGENIC
2R	10429791	2R_10429791_SNP [dm3] 2R_14542286_SNP [dm6]	T	C	2.983e^-4	0.815	INTRON ttv
2R	10429819	2R_10429819_SNP [dm3] 2R_14542314_SNP [dm6]	A	G	2.983e^-4	0.815	INTRON ttv
2L	16063704	2L_16063704_SNP [dm3] 2L_16063704_SNP [dm6]	A	G	2.987e^-4	0.815	INTRON beat-Ia	TF binding site BDTNP1_TFBS_twi
2L	2763809	2L_2763809_DEL [dm3] 2L_2763809_DEL [dm6]	AGA	A	2.991e^-4	0.815	UTR_3_PRIME Trn-SR & 1 other DOWNSTREAM CG3077 & 1 other
2L	17922593	2L_17922593_SNP [dm3] 2L_17922593_SNP [dm6]	T	C	2.998e^-4	0.815	INTERGENIC
2R	17438852	2R_17438852_SNP [dm3] 2R_21551347_SNP [dm6]	A	G	3.000e^-4	0.815	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	15754479	2L_15754479_SNP [dm3] 2L_15754479_SNP [dm6]	G	T	3.001e^-4	0.815	SYNONYMOUS_CODING l_2_35Df	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21505716	3R_21505716_SNP [dm3] 3R_25679994_SNP [dm6]	G	T	3.003e^-4	0.815	SYNONYMOUS_CODING CG4743 UPSTREAM CG5028 DOWNSTREAM CG5039	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26339437	3R_26339437_SNP [dm3] 3R_30513715_SNP [dm6]	A	T	3.006e^-4	0.815	INTRON CG31524
2L	8652223	2L_8652223_SNP [dm3] 2L_8652223_SNP [dm6]	G	A	3.009e^-4	0.815	INTRON Sema-1a
X	17178997	X_17178997_SNP [dm3] X_17284964_SNP [dm6]	A	T	3.012e^-4	0.815	UPSTREAM CG8661 DOWNSTREAM Fim INTRON CG5445
3R	5789056	3R_5789056_SNP [dm3] 3R_9963334_SNP [dm6]	G	A	3.016e^-4	0.815	INTRON Glut4EF
3R	8944606	3R_8944606_SNP [dm3] 3R_13118884_SNP [dm6]	T	G	3.017e^-4	0.815	INTRON timeout
3R	2472726	3R_2472726_SNP [dm3] 3R_6647004_SNP [dm6]	T	C	3.017e^-4	0.815	SYNONYMOUS_CODING Taf1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	2470846	3R_2470846_SNP [dm3] 3R_6645124_SNP [dm6]	A	T	3.022e^-4	0.815	UPSTREAM CG1315 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	5882742	3R_5882742_SNP [dm3] 3R_10057020_SNP [dm6]	C	T	3.023e^-4	0.815	UPSTREAM Npc2d INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	5188729	X_5188729_SNP [dm3] X_5294696_SNP [dm6]	A	G	3.027e^-4	0.815	INTERGENIC
2L	13465229	2L_13465229_SNP [dm3] 2L_13465229_SNP [dm6]	A	G	3.027e^-4	0.815	INTRON CG42784
2R	5175161	2R_5175161_SNP [dm3] 2R_9287656_SNP [dm6]	G	A	3.028e^-4	0.815	INTRON CG1968	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15764329	2R_15764329_SNP [dm3] 2R_19876824_SNP [dm6]	A	C	3.032e^-4	0.815	INTERGENIC
3L	2737802	3L_2737802_SNP [dm3] 3L_2737802_SNP [dm6]	A	C	3.042e^-4	0.815	INTRON Mrtf
2R	4943917	2R_4943917_DEL [dm3] 2R_9056412_DEL [dm6]	CTCTCTCTCTC...	C	3.044e^-4	0.815	INTRON CG13743	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6701619	3L_6701619_SNP [dm3] 3L_6708519_SNP [dm6]	A	T	3.047e^-4	0.815	INTRON CG8519
3R	22018333	3R_22018333_SNP [dm3] 3R_26192611_SNP [dm6]	G	A	3.050e^-4	0.815	INTERGENIC
3L	3050733	3L_3050733_SNP [dm3] 3L_3050733_SNP [dm6]	T	C	3.052e^-4	0.815	DOWNSTREAM Sk2 INTRON CG32485	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	2766575	2L_2766575_SNP [dm3] 2L_2766575_SNP [dm6]	G	A	3.052e^-4	0.815	SYNONYMOUS_CODING aph-1 UPSTREAM CG3077 DOWNSTREAM Taf10b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	6025500	3L_6025500_DEL [dm3] 3L_6032400_DEL [dm6]	GCCCTATGCTTTAG...	G	3.055e^-4	0.815	DOWNSTREAM CG10477 INTERGENIC
2L	17231567	2L_17231567_SNP [dm3] 2L_17231567_SNP [dm6]	C	A	3.056e^-4	0.815	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_twi
2R	7391959	2R_7391959_SNP [dm3] 2R_11504454_SNP [dm6]	T	A	3.057e^-4	0.815	INTRON inv
X	6431089	X_6431089_SNP [dm3] X_6537056_SNP [dm6]	C	T	3.061e^-4	0.815	INTRON dx	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	514763	3R_514763_SNP [dm3] 3R_4689041_SNP [dm6]	A	T	3.066e^-4	0.815	DOWNSTREAM CG33927 INTRON CG43427
3R	14803971	3R_14803971_SNP [dm3] 3R_18978249_SNP [dm6]	C	T	3.070e^-4	0.815	DOWNSTREAM CG12269 & 2 others INTERGENIC
3L	1774191	3L_1774191_SNP [dm3] 3L_1774191_SNP [dm6]	G	A	3.070e^-4	0.815	SYNONYMOUS_CODING CG13933 EXON CR44351	TF binding site BDTNP1_TFBS_dl
3L	4512131	3L_4512131_SNP [dm3] 3L_4512131_SNP [dm6]	T	G	3.077e^-4	0.815	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3749968	3R_3749968_SNP [dm3] 3R_7924246_SNP [dm6]	G	T	3.079e^-4	0.815	UTR_3_PRIME lds DOWNSTREAM dsx
3R	17930749	3R_17930749_SNP [dm3] 3R_22105027_SNP [dm6]	C	G	3.082e^-4	0.815	NON_SYNONYMOUS_CODING CG13407 INTRON CG5778
3L	10961407	3L_10961407_SNP [dm3] 3L_10968307_SNP [dm6]	C	T	3.084e^-4	0.815	INTERGENIC
2L	11701091	2L_11701091_SNP [dm3] 2L_11701091_SNP [dm6]	A	G	3.108e^-4	0.815	INTERGENIC
2L	7340131	2L_7340131_SNP [dm3] 2L_7340131_SNP [dm6]	G	A	3.112e^-4	0.815	INTRON Wnt6	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	3749707	2L_3749707_SNP [dm3] 2L_3749707_SNP [dm6]	T	C	3.114e^-4	0.815	INTRON CG10019
3R	6433122	3R_6433122_INS [dm3] 3R_10607400_INS [dm6]	C	CC	3.117e^-4	0.815	INTRON hth
3L	3806495	3L_3806495_SNP [dm3] 3L_3806495_SNP [dm6]	C	T	3.123e^-4	0.815	UPSTREAM IntS10 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7244005	2L_7244005_SNP [dm3] 2L_7244005_SNP [dm6]	A	C	3.128e^-4	0.815	INTRON Ndae1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	21691431	3R_21691431_SNP [dm3] 3R_25865709_SNP [dm6]	G	T	3.128e^-4	0.815	INTRON CG5890
2R	4139216	2R_4139216_SNP [dm3] 2R_8251711_SNP [dm6]	A	T	3.130e^-4	0.815	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_zfh1
2R	4139235	2R_4139235_SNP [dm3] 2R_8251730_SNP [dm6]	T	C	3.130e^-4	0.815	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_zfh1
2R	4139250	2R_4139250_SNP [dm3] 2R_8251745_SNP [dm6]	A	G	3.130e^-4	0.815	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_zfh1
3R	3735139	3R_3735139_SNP [dm3] 3R_7909417_SNP [dm6]	T	A	3.137e^-4	0.815	UTR_3_PRIME Taf7 DOWNSTREAM Prat & 1 other
2L	6114287	2L_6114287_SNP [dm3] 2L_6114287_SNP [dm6]	T	C	3.141e^-4	0.815	INTRON stai
2L	6933811	2L_6933811_SNP [dm3] 2L_6933811_SNP [dm6]	T	C	3.143e^-4	0.815	NON_SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14437002	3L_14437002_SNP [dm3] 3L_14443902_SNP [dm6]	T	A	3.144e^-4	0.815	INTRON bbg
3L	14437005	3L_14437005_SNP [dm3] 3L_14443905_SNP [dm6]	C	A	3.144e^-4	0.815	INTRON bbg
3R	10368067	3R_10368067_SNP [dm3] 3R_14542345_SNP [dm6]	G	C	3.145e^-4	0.815	INTRON Pde6
2R	2878825	2R_2878825_SNP [dm3] 2R_6991320_SNP [dm6]	G	A	3.147e^-4	0.815	INTERGENIC
2L	17254803	2L_17254803_SNP [dm3] 2L_17254803_SNP [dm6]	A	C	3.147e^-4	0.815	INTRON beat-IIIc
3R	21072504	3R_21072504_SNP [dm3] 3R_25246782_SNP [dm6]	C	T	3.149e^-4	0.815	UPSTREAM Nup37 INTRON RpS27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	17179015	X_17179015_SNP [dm3] X_17284982_SNP [dm6]	T	A	3.158e^-4	0.815	UPSTREAM CG8661 DOWNSTREAM Fim INTRON CG5445
2L	17926102	2L_17926102_DEL [dm3] 2L_17926102_DEL [dm6]	GGCCAGCTACTT...	G	3.158e^-4	0.815	INTERGENIC
2L	3021232	2L_3021232_SNP [dm3] 2L_3021232_SNP [dm6]	T	C	3.165e^-4	0.815	UTR_3_PRIME CG17264 DOWNSTREAM alpha4GT1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14638058	X_14638058_SNP [dm3] X_14744025_SNP [dm6]	A	G	3.166e^-4	0.815	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5129940	X_5129940_SNP [dm3] X_5235907_SNP [dm6]	G	A	3.171e^-4	0.815	NON_SYNONYMOUS_CODING rg UTR_3_PRIME CG15465
2R	9606146	2R_9606146_SNP [dm3] 2R_13718641_SNP [dm6]	T	C	3.177e^-4	0.815	INTRON fas	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13425266	2L_13425266_SNP [dm3] 2L_13425266_SNP [dm6]	C	T	3.181e^-4	0.815	INTRON CG42784
3L	15806238	3L_15806238_SNP [dm3] 3L_15813138_SNP [dm6]	C	A	3.184e^-4	0.815	INTRON fwe
2L	2598651	2L_2598651_SNP [dm3] 2L_2598651_SNP [dm6]	G	A	3.184e^-4	0.815	EXON CR44790
3R	19905178	3R_19905178_SNP [dm3] 3R_24079456_SNP [dm6]	C	A	3.185e^-4	0.815	INTRON 4EHP
2L	14095103	2L_14095103_SNP [dm3] 2L_14095103_SNP [dm6]	T	A	3.194e^-4	0.815	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	10365103	3R_10365103_SNP [dm3] 3R_14539381_SNP [dm6]	C	T	3.202e^-4	0.815	INTRON Pde6
3R	7023635	3R_7023635_SNP [dm3] 3R_11197913_SNP [dm6]	C	T	3.205e^-4	0.815	DOWNSTREAM CG18577 INTRON cu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	13289860	2L_13289860_SNP [dm3] 2L_13289860_SNP [dm6]	T	G	3.206e^-4	0.815	UPSTREAM CG31729 & 1 other DOWNSTREAM Uvrag INTERGENIC	TF binding site mE1_TFBS_Ubx
3R	10368250	3R_10368250_SNP [dm3] 3R_14542528_SNP [dm6]	A	G	3.210e^-4	0.815	INTRON Pde6
X	2922492	X_2922492_SNP [dm3] X_3028459_SNP [dm6]	C	A	3.213e^-4	0.815	INTRON kirre
3R	1581957	3R_1581957_SNP [dm3] 3R_5756235_SNP [dm6]	T	G	3.217e^-4	0.815	NON_SYNONYMOUS_CODING Sec8
2R	9904512	2R_9904512_SNP [dm3] 2R_14017007_SNP [dm6]	T	A	3.225e^-4	0.815	INTRON mam
3R	8956938	3R_8956938_DEL [dm3] 3R_13131216_DEL [dm6]	TT	T	3.231e^-4	0.815	INTRON timeout & 1 other
X	18908702	X_18908702_SNP [dm3] X_19014669_SNP [dm6]	G	A	3.248e^-4	0.815	INTRON CG43759	TF binding site mE1_TFBS_cad
3R	24660135	3R_24660135_SNP [dm3] 3R_28834413_SNP [dm6]	C	A	3.249e^-4	0.815	NON_SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo
2L	17200715	2L_17200715_SNP [dm3] 2L_17200715_SNP [dm6]	G	A	3.253e^-4	0.815	INTRON beat-IIIc
3R	8934686	3R_8934686_SNP [dm3] 3R_13108964_SNP [dm6]	C	T	3.259e^-4	0.815	INTRON timeout
3L	3741422	3L_3741422_SNP [dm3] 3L_3741422_SNP [dm6]	T	G	3.261e^-4	0.815	INTRON CG32264	TF binding site mE1_TFBS_inv
3R	17907428	3R_17907428_SNP [dm3] 3R_22081706_SNP [dm6]	C	G	3.271e^-4	0.815	INTRON CG13408
2L	8675427	2L_8675427_SNP [dm3] 2L_8675427_SNP [dm6]	A	C	3.274e^-4	0.815	SYNONYMOUS_CODING Glt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6362946	2L_6362946_SNP [dm3] 2L_6362946_SNP [dm6]	A	C	3.280e^-4	0.815	INTERGENIC
X	2305828	X_2305828_SNP [dm3] X_2411795_SNP [dm6]	C	G	3.290e^-4	0.815	UPSTREAM CG12496 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4956723	3L_4956723_SNP [dm3] 3L_4956723_SNP [dm6]	T	C	3.297e^-4	0.815	SYNONYMOUS_CODING Con
3R	21888984	3R_21888984_SNP [dm3] 3R_26063262_SNP [dm6]	G	T	3.298e^-4	0.815	UPSTREAM CG14551 INTERGENIC
2L	12720188	2L_12720188_SNP [dm3] 2L_12720188_SNP [dm6]	C	A	3.298e^-4	0.815	INTRON CG5792 & 1 other	TF binding site mE1_TFBS_sens
2L	1717533	2L_1717533_SNP [dm3] 2L_1717533_SNP [dm6]	T	C	3.298e^-4	0.815	INTRON Rim2
2R	10430614	2R_10430614_SNP [dm3] 2R_14543109_SNP [dm6]	G	T	3.299e^-4	0.815	INTRON ttv
3R	26473893	3R_26473893_SNP [dm3] 3R_30648171_SNP [dm6]	C	A	3.300e^-4	0.815	NON_SYNONYMOUS_CODING PH4alphaPV UPSTREAM CG34432
3L	14444733	3L_14444733_SNP [dm3] 3L_14451633_SNP [dm6]	C	A	3.303e^-4	0.815	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	7668233	X_7668233_SNP [dm3] X_7774200_SNP [dm6]	G	C	3.305e^-4	0.815	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	10846833	3R_10846833_SNP [dm3] 3R_15021111_SNP [dm6]	A	C	3.307e^-4	0.815	INTERGENIC
2L	13465248	2L_13465248_SNP [dm3] 2L_13465248_SNP [dm6]	G	T	3.315e^-4	0.815	INTRON CG42784
3R	20904183	3R_20904183_SNP [dm3] 3R_25078461_SNP [dm6]	T	G	3.315e^-4	0.815	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	17200739	2L_17200739_SNP [dm3] 2L_17200739_SNP [dm6]	G	A	3.316e^-4	0.815	INTRON beat-IIIc
2L	14097588	2L_14097588_SNP [dm3] 2L_14097588_SNP [dm6]	A	T	3.318e^-4	0.815	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13924797	2L_13924797_DEL [dm3] 2L_13924797_DEL [dm6]	ACCTGTG	A	3.326e^-4	0.815	INTRON Ance-3
3R	9147856	3R_9147856_DEL [dm3] 3R_13322134_DEL [dm6]	AA	A	3.328e^-4	0.815	INTERGENIC
3R	25431553	3R_25431553_SNP [dm3] 3R_29605831_SNP [dm6]	C	T	3.330e^-4	0.815	INTRON alph
2L	7968826	2L_7968826_SNP [dm3] 2L_7968826_SNP [dm6]	C	G	3.330e^-4	0.815	INTRON Snoo
2L	19727765	2L_19727765_SNP [dm3] 2L_19727765_SNP [dm6]	C	T	3.335e^-4	0.815	SYNONYMOUS_CODING Lar	TF binding site mE1_TFBS_chinmo
3L	11060607	3L_11060607_SNP [dm3] 3L_11067507_SNP [dm6]	G	A	3.337e^-4	0.815	SYNONYMOUS_CODING SuUR UTR_3_PRIME CG45101	TF binding site mE1_TFBS_sens
3R	21511658	3R_21511658_SNP [dm3] 3R_25685936_SNP [dm6]	G	A	3.346e^-4	0.815	SYNONYMOUS_CODING CLS UPSTREAM RpL27	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	14724506	2R_14724506_SNP [dm3] 2R_18837001_SNP [dm6]	T	A	3.346e^-4	0.815	UTR_3_PRIME CG15099 DOWNSTREAM CG15083
2L	5904944	2L_5904944_SNP [dm3] 2L_5904944_SNP [dm6]	A	G	3.352e^-4	0.815	UPSTREAM CG9021 DOWNSTREAM CR43808 INTERGENIC
2L	16428928	2L_16428928_SNP [dm3] 2L_16428928_SNP [dm6]	A	G	3.363e^-4	0.815	INTRON CG5888	TF binding site mE1_TFBS_HSA
2L	11676310	2L_11676310_SNP [dm3] 2L_11676310_SNP [dm6]	T	G	3.374e^-4	0.815	INTERGENIC
3R	22708583	3R_22708583_SNP [dm3] 3R_26882861_SNP [dm6]	C	T	3.385e^-4	0.815	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	1570003	3R_1570003_DEL [dm3] 3R_5744281_DEL [dm6]	TTGAAAT	T	3.387e^-4	0.815	INTRON Madm
2L	17885874	2L_17885874_SNP [dm3] 2L_17885874_SNP [dm6]	T	A	3.393e^-4	0.815	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	3151292	X_3151292_INS [dm3] X_3257259_INS [dm6]	A	AA	3.403e^-4	0.815	INTRON dnc
3L	5095198	3L_5095198_SNP [dm3] 3L_5095198_SNP [dm6]	C	A	3.406e^-4	0.815	INTERGENIC
3R	7023699	3R_7023699_SNP [dm3] 3R_11197977_SNP [dm6]	T	G	3.408e^-4	0.815	DOWNSTREAM CG18577 INTRON cu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	21854790	3R_21854790_SNP [dm3] 3R_26029068_SNP [dm6]	T	C	3.418e^-4	0.815	UTR_3_PRIME E_spl_m5-HLH	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8112986	3L_8112986_SNP [dm3] 3L_8119886_SNP [dm6]	A	C	3.420e^-4	0.815	INTRON msk
3R	17998375	3R_17998375_SNP [dm3] 3R_22172653_SNP [dm6]	T	A	3.423e^-4	0.815	INTRON SKIP	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA
2L	3752242	2L_3752242_SNP [dm3] 2L_3752242_SNP [dm6]	T	G	3.428e^-4	0.815	UTR_3_PRIME CG10019
3R	24034416	3R_24034416_SNP [dm3] 3R_28208694_SNP [dm6]	A	G	3.429e^-4	0.815	INTRON CG34354	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	17200700	2L_17200700_SNP [dm3] 2L_17200700_SNP [dm6]	T	G	3.431e^-4	0.815	INTRON beat-IIIc
2R	18632916	2R_18632916_DEL [dm3] 2R_22745411_DEL [dm6]	GGATG	G	3.435e^-4	0.815	INTRON CG42260
2R	8849357	2R_8849357_SNP [dm3] 2R_12961852_SNP [dm6]	A	T	3.463e^-4	0.815	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	5892499	2L_5892499_SNP [dm3] 2L_5892499_SNP [dm6]	C	G	3.465e^-4	0.815	UTR_3_PRIME Acp26Ab DOWNSTREAM Acp26Aa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	17254988	2L_17254988_SNP [dm3] 2L_17254988_SNP [dm6]	C	A	3.467e^-4	0.815	INTRON beat-IIIc
3L	11338802	3L_11338802_SNP [dm3] 3L_11345702_SNP [dm6]	C	T	3.467e^-4	0.815	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	9196004	3R_9196004_SNP [dm3] 3R_13370282_SNP [dm6]	C	A	3.469e^-4	0.815	UTR_3_PRIME Lip3 & 1 other
3R	21406774	3R_21406774_SNP [dm3] 3R_25581052_SNP [dm6]	C	A	3.476e^-4	0.815	DOWNSTREAM CG4582 INTRON msi
2R	7563060	2R_7563060_SNP [dm3] 2R_11675555_SNP [dm6]	T	C	3.479e^-4	0.815	UPSTREAM Tret1-2 DOWNSTREAM Tret1-1 INTRON Roc2	TF binding site mE1_TFBS_HSA
3R	5867251	3R_5867251_SNP [dm3] 3R_10041529_SNP [dm6]	A	G	3.479e^-4	0.815	INTRON Mical
3L	2547802	3L_2547802_SNP [dm3] 3L_2547802_SNP [dm6]	A	T	3.480e^-4	0.815	INTRON Spn
2R	13088130	2R_13088130_DEL [dm3] 2R_17200625_DEL [dm6]	CT	C	3.488e^-4	0.815	INTERGENIC
2L	7758442	2L_7758442_SNP [dm3] 2L_7758442_SNP [dm6]	A	G	3.489e^-4	0.815	INTRON CG7196
3R	9260572	3R_9260572_SNP [dm3] 3R_13434850_SNP [dm6]	G	A	3.493e^-4	0.815	START_GAINED yrt UTR_5_PRIME yrt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	14408327	2L_14408327_SNP [dm3] 2L_14408327_SNP [dm6]	T	A	3.495e^-4	0.815	INTRON elB
2R	16481852	2R_16481852_SNP [dm3] 2R_20594347_SNP [dm6]	G	A	3.499e^-4	0.815	INTRON bl
2R	12378585	2R_12378585_SNP [dm3] 2R_16491080_SNP [dm6]	C	T	3.517e^-4	0.815	UPSTREAM S-Lap8 INTERGENIC
3L	3943109	3L_3943109_SNP [dm3] 3L_3943109_SNP [dm6]	G	C	3.518e^-4	0.815	UTR_5_PRIME CG14982 UPSTREAM CG10863
2L	17945812	2L_17945812_SNP [dm3] 2L_17945812_SNP [dm6]	G	A	3.521e^-4	0.815	INTERGENIC
2R	15974284	2R_15974284_SNP [dm3] 2R_20086779_SNP [dm6]	C	T	3.523e^-4	0.815	DOWNSTREAM CR44632 INTERGENIC
3L	21616716	3L_21616716_SNP [dm3] 3L_21623616_SNP [dm6]	G	C	3.534e^-4	0.815	INTRON CG7166
3L	4721738	3L_4721738_SNP [dm3] 3L_4721738_SNP [dm6]	C	A	3.535e^-4	0.815	INTRON RhoGEF64C
3R	21065601	3R_21065601_SNP [dm3] 3R_25239879_SNP [dm6]	A	T	3.535e^-4	0.815	UPSTREAM to DOWNSTREAM CG11852 INTERGENIC
2L	1258662	2L_1258662_SNP [dm3] 2L_1258662_SNP [dm6]	G	A	3.538e^-4	0.815	INTRON robo3
3R	4855045	3R_4855045_SNP [dm3] 3R_9029323_SNP [dm6]	G	A	3.543e^-4	0.815	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16937743	2R_16937743_SNP [dm3] 2R_21050238_SNP [dm6]	C	A	3.544e^-4	0.815	UTR_3_PRIME shg	TF binding site BDTNP1_TFBS_dl
2R	19181660	2R_19181660_SNP [dm3] 2R_23294137_SNP [dm6]	T	G	3.545e^-4	0.815	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	10754452	3R_10754452_SNP [dm3] 3R_14928730_SNP [dm6]	A	G	3.546e^-4	0.815	INTERGENIC
3R	20615164	3R_20615164_SNP [dm3] 3R_24789442_SNP [dm6]	A	T	3.548e^-4	0.815	SYNONYMOUS_CODING CG13634 INTRON Ets96B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17042161	2L_17042161_SNP [dm3] 2L_17042161_SNP [dm6]	T	C	3.549e^-4	0.815	DOWNSTREAM CR43802 INTERGENIC
3L	11339151	3L_11339151_SNP [dm3] 3L_11346051_SNP [dm6]	G	A	3.560e^-4	0.815	INTERGENIC
3L	17731605	3L_17731605_SNP [dm3] 3L_17738505_SNP [dm6]	C	T	3.568e^-4	0.815	INTRON Ccn
3R	5765608	3R_5765608_SNP [dm3] 3R_9939886_SNP [dm6]	C	T	3.568e^-4	0.815	INTRON Glut4EF
3L	11041152	3L_11041152_DEL [dm3] 3L_11048052_DEL [dm6]	AA	A	3.569e^-4	0.815	INTRON CG43693	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl mE1_TFBS_zfh1
X	5921382	X_5921382_SNP [dm3] X_6027349_SNP [dm6]	C	G	3.569e^-4	0.815	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	17252624	2L_17252624_SNP [dm3] 2L_17252624_SNP [dm6]	G	T	3.575e^-4	0.815	INTRON beat-IIIc
3R	8734246	3R_8734246_SNP [dm3] 3R_12908524_SNP [dm6]	C	T	3.576e^-4	0.815	INTERGENIC
2L	14771817	2L_14771817_SNP [dm3] 2L_14771817_SNP [dm6]	A	T	3.589e^-4	0.815	INTERGENIC
2L	17200695	2L_17200695_SNP [dm3] 2L_17200695_SNP [dm6]	C	A	3.589e^-4	0.815	INTRON beat-IIIc
3L	17731651	3L_17731651_SNP [dm3] 3L_17738551_SNP [dm6]	T	C	3.589e^-4	0.815	INTRON Ccn
3L	10911307	3L_10911307_INS [dm3] 3L_10918207_INS [dm6]	G	GG	3.589e^-4	0.815	INTERGENIC
3R	21420316	3R_21420316_SNP [dm3] 3R_25594594_SNP [dm6]	A	C	3.591e^-4	0.815	UTR_5_PRIME msi INTRON msi & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2892509	2L_2892509_SNP [dm3] 2L_2892509_SNP [dm6]	C	G	3.597e^-4	0.815	INTRON lilli	TF binding site BDTNP1_TFBS_twi
2L	3416128	2L_3416128_SNP [dm3] 2L_3416128_SNP [dm6]	G	A	3.601e^-4	0.815	UPSTREAM CG31952 INTRON pgant2
3R	5978532	3R_5978532_SNP [dm3] 3R_10152810_SNP [dm6]	A	T	3.603e^-4	0.815	INTRON Invadolysin
3R	10301397	3R_10301397_DEL [dm3] 3R_14475675_DEL [dm6]	ACAATA	A	3.607e^-4	0.815	INTRON cv-c	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	6313283	2L_6313283_SNP [dm3] 2L_6313283_SNP [dm6]	T	C	3.612e^-4	0.815	INTRON Ddr
2L	6361973	2L_6361973_SNP [dm3] 2L_6361973_SNP [dm6]	T	C	3.635e^-4	0.819	DOWNSTREAM CR44778 INTERGENIC
X	15975708	X_15975708_SNP [dm3] X_16081675_SNP [dm6]	T	C	3.647e^-4	0.819	UPSTREAM mir-4958 INTRON Tob
3R	6427607	3R_6427607_SNP [dm3] 3R_10601885_SNP [dm6]	G	A	3.648e^-4	0.819	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	9027483	X_9027483_DEL [dm3] X_9133450_DEL [dm6]	ATGTA	A	3.649e^-4	0.819	INTRON fend	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	2884758	X_2884758_SNP [dm3] X_2990725_SNP [dm6]	A	G	3.653e^-4	0.819	INTRON kirre
2L	6105563	2L_6105563_SNP [dm3] 2L_6105563_SNP [dm6]	A	G	3.657e^-4	0.819	INTRON stai
2R	15034521	2R_15034521_SNP [dm3] 2R_19147016_SNP [dm6]	A	G	3.667e^-4	0.819	INTRON ena
3L	10462464	3L_10462464_SNP [dm3] 3L_10469364_SNP [dm6]	G	A	3.670e^-4	0.819	DOWNSTREAM S-Lap3 INTERGENIC
3R	7053563	3R_7053563_SNP [dm3] 3R_11227841_SNP [dm6]	A	G	3.675e^-4	0.819	NON_SYNONYMOUS_CODING CG17726 DOWNSTREAM GCC88	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	16079085	3L_16079085_SNP [dm3] 3L_16085985_SNP [dm6]	A	T	3.681e^-4	0.819	UTR_3_PRIME Taspase1 DOWNSTREAM CG13075
X	5130530	X_5130530_SNP [dm3] X_5236497_SNP [dm6]	G	A	3.688e^-4	0.819	SYNONYMOUS_CODING rg UTR_3_PRIME CG15465
3L	15629655	3L_15629655_SNP [dm3] 3L_15636555_SNP [dm6]	G	A	3.690e^-4	0.819	INTRON comm3
2L	18142071	2L_18142071_SNP [dm3] 2L_18142071_SNP [dm6]	C	G	3.691e^-4	0.819	NON_SYNONYMOUS_CODING Socs36E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10370747	3R_10370747_SNP [dm3] 3R_14545025_SNP [dm6]	C	A	3.695e^-4	0.819	INTRON Pde6
3R	6349140	3R_6349140_SNP [dm3] 3R_10523418_SNP [dm6]	C	A	3.702e^-4	0.819	INTRON hth
2L	16428835	2L_16428835_SNP [dm3] 2L_16428835_SNP [dm6]	T	C	3.705e^-4	0.819	INTRON CG5888	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	14807261	3R_14807261_SNP [dm3] 3R_18981539_SNP [dm6]	A	C	3.714e^-4	0.819	UTR_5_PRIME dnk UPSTREAM Smu1 INTRON dnk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3698283	3R_3698283_SNP [dm3] 3R_7872561_SNP [dm6]	A	G	3.720e^-4	0.819	INTRON CG17816
2L	7638676	2L_7638676_SNP [dm3] 2L_7638676_SNP [dm6]	T	C	3.732e^-4	0.819	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	16435181	3L_16435181_SNP [dm3] 3L_16442081_SNP [dm6]	A	G	3.747e^-4	0.819	INTRON CG33158 & 1 other
3R	5743748	3R_5743748_SNP [dm3] 3R_9918026_SNP [dm6]	C	G	3.748e^-4	0.819	INTRON Glut4EF	TF binding site mE1_TFBS_Trl
3L	16545304	3L_16545304_SNP [dm3] 3L_16552204_SNP [dm6]	T	C	3.753e^-4	0.819	INTERGENIC
2L	15610070	2L_15610070_SNP [dm3] 2L_15610070_SNP [dm6]	G	C	3.757e^-4	0.819	UPSTREAM CR44865 DOWNSTREAM CG15255 INTERGENIC
3R	5842613	3R_5842613_SNP [dm3] 3R_10016891_SNP [dm6]	T	G	3.760e^-4	0.819	INTRON Mical
X	18047871	X_18047871_SNP [dm3] X_18153838_SNP [dm6]	G	C	3.762e^-4	0.819	INTERGENIC
2L	10714410	2L_10714410_SNP [dm3] 2L_10714410_SNP [dm6]	A	G	3.765e^-4	0.819	INTERGENIC
2L	17922373	2L_17922373_SNP [dm3] 2L_17922373_SNP [dm6]	A	G	3.767e^-4	0.819	INTERGENIC
3L	10244290	3L_10244290_SNP [dm3] 3L_10251190_SNP [dm6]	A	G	3.769e^-4	0.819	INTERGENIC
3L	16432386	3L_16432386_SNP [dm3] 3L_16439286_SNP [dm6]	T	A	3.772e^-4	0.819	INTRON CG33158 & 1 other
2L	8653400	2L_8653400_SNP [dm3] 2L_8653400_SNP [dm6]	C	T	3.774e^-4	0.819	INTRON Sema-1a
3R	9195104	3R_9195104_SNP [dm3] 3R_13369382_SNP [dm6]	A	C	3.778e^-4	0.819	UPSTREAM CheA87a DOWNSTREAM Dic1 & 1 other INTERGENIC
2R	8499879	2R_8499879_SNP [dm3] 2R_12612374_SNP [dm6]	T	A	3.782e^-4	0.819	UPSTREAM Galphaq & 1 other DOWNSTREAM Amph INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
3L	10984720	3L_10984720_SNP [dm3] 3L_10991620_SNP [dm6]	A	G	3.787e^-4	0.819	INTRON klu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5902758	3R_5902758_SNP [dm3] 3R_10077036_SNP [dm6]	A	G	3.794e^-4	0.819	INTERGENIC
X	17425337	X_17425337_SNP [dm3] X_17531304_SNP [dm6]	G	C	3.796e^-4	0.819	UTR_5_PRIME CG43658 INTRON CG43658	TF binding site mE1_TFBS_bab1
X	8327848	X_8327848_SNP [dm3] X_8433815_SNP [dm6]	C	G	3.798e^-4	0.819	UPSTREAM CG32712 DOWNSTREAM CG12125 & 1 other INTERGENIC
2L	8933796	2L_8933796_SNP [dm3] 2L_8933796_SNP [dm6]	C	T	3.809e^-4	0.819	UPSTREAM Tsp29Fa DOWNSTREAM CG34398 INTERGENIC
3R	26479073	3R_26479073_SNP [dm3] 3R_30653351_SNP [dm6]	G	A	3.811e^-4	0.819	INTERGENIC
2R	9606129	2R_9606129_SNP [dm3] 2R_13718624_SNP [dm6]	T	A	3.811e^-4	0.819	INTRON fas	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	17179019	X_17179019_SNP [dm3] X_17284986_SNP [dm6]	G	C	3.814e^-4	0.819	UPSTREAM CG8661 DOWNSTREAM Fim INTRON CG5445
3L	10453825	3L_10453825_SNP [dm3] 3L_10460725_SNP [dm6]	A	T	3.814e^-4	0.819	NON_SYNONYMOUS_CODING Gem3	TF binding site mE1_TFBS_sens
X	15975732	X_15975732_SNP [dm3] X_16081699_SNP [dm6]	G	A	3.814e^-4	0.819	UPSTREAM mir-4958 INTRON Tob
3R	15296554	3R_15296554_SNP [dm3] 3R_19470832_SNP [dm6]	T	A	3.815e^-4	0.819	INTRON Dys
2L	7708379	2L_7708379_SNP [dm3] 2L_7708379_SNP [dm6]	G	T	3.829e^-4	0.819	SYNONYMOUS_CODING Tep3 EXON CR44990
2R	6854943	2R_6854943_SNP [dm3] 2R_10967438_SNP [dm6]	A	G	3.831e^-4	0.819	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	16942622	X_16942622_SNP [dm3] X_17048589_SNP [dm6]	C	A	3.837e^-4	0.819	INTRON CG45002
3L	10244311	3L_10244311_SNP [dm3] 3L_10251211_SNP [dm6]	A	G	3.837e^-4	0.819	INTERGENIC
X	6483626	X_6483626_SNP [dm3] X_6589593_SNP [dm6]	C	G	3.842e^-4	0.819	NON_SYNONYMOUS_CODING CG17717 DOWNSTREAM CG34417	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_h mE1_TFBS_HSA
2R	16511155	2R_16511155_SNP [dm3] 2R_20623650_SNP [dm6]	C	T	3.843e^-4	0.819	NON_SYNONYMOUS_CODING CG16742 UPSTREAM CG11180	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	11801842	2R_11801842_SNP [dm3] 2R_15914337_SNP [dm6]	G	T	3.846e^-4	0.819	INTRON sli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3671646	2L_3671646_SNP [dm3] 2L_3671646_SNP [dm6]	A	C	3.852e^-4	0.819	INTRON CG34340
X	9781860	X_9781860_SNP [dm3] X_9887827_SNP [dm6]	T	A	3.864e^-4	0.82	DOWNSTREAM CG15249 INTERGENIC
2L	16063671	2L_16063671_SNP [dm3] 2L_16063671_SNP [dm6]	G	A	3.867e^-4	0.82	INTRON beat-Ia	TF binding site BDTNP1_TFBS_twi
X	16654691	X_16654691_SNP [dm3] X_16760658_SNP [dm6]	G	T	3.874e^-4	0.82	INTRON if	TF binding site BDTNP1_TFBS_da
2R	4182147	2R_4182147_SNP [dm3] 2R_8294642_SNP [dm6]	C	T	3.880e^-4	0.82	INTERGENIC
3R	6850533	3R_6850533_SNP [dm3] 3R_11024811_SNP [dm6]	A	T	3.883e^-4	0.82	INTRON CG34114
3R	18439680	3R_18439680_SNP [dm3] 3R_22613958_SNP [dm6]	C	T	3.893e^-4	0.82	SPLICE_SITE_REGION EF-G2 UPSTREAM CG31156 INTRON EF-G2	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2L	17200899	2L_17200899_SNP [dm3] 2L_17200899_SNP [dm6]	A	T	3.895e^-4	0.82	INTRON beat-IIIc	TF binding site mE1_TFBS_inv
2L	17200905	2L_17200905_SNP [dm3] 2L_17200905_SNP [dm6]	G	A	3.895e^-4	0.82	INTRON beat-IIIc	TF binding site mE1_TFBS_inv
3R	9261129	3R_9261129_SNP [dm3] 3R_13435407_SNP [dm6]	A	C	3.900e^-4	0.82	UPSTREAM yrt INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2L	5892418	2L_5892418_SNP [dm3] 2L_5892418_SNP [dm6]	G	T	3.903e^-4	0.82	UTR_3_PRIME Acp26Ab DOWNSTREAM Acp26Aa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	16454549	2R_16454549_SNP [dm3] 2R_20567044_SNP [dm6]	G	T	3.904e^-4	0.82	INTRON qsm
3R	24034523	3R_24034523_SNP [dm3] 3R_28208801_SNP [dm6]	G	A	3.917e^-4	0.821	INTRON CG34354	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	4726312	2L_4726312_SNP [dm3] 2L_4726312_SNP [dm6]	G	T	3.922e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	14409124	2R_14409124_SNP [dm3] 2R_18521619_SNP [dm6]	C	A	3.923e^-4	0.821	INTRON CG43066	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14361602	2L_14361602_SNP [dm3] 2L_14361602_SNP [dm6]	C	T	3.930e^-4	0.822	UPSTREAM spel1 & 1 other DOWNSTREAM Pgant35A INTERGENIC
2R	9903731	2R_9903731_SNP [dm3] 2R_14016226_SNP [dm6]	T	G	3.936e^-4	0.822	INTRON mam
3L	8003550	3L_8003550_SNP [dm3] 3L_8010450_SNP [dm6]	T	A	3.947e^-4	0.823	INTRON nmo
2R	4827012	2R_4827012_SNP [dm3] 2R_8939507_SNP [dm6]	A	G	3.950e^-4	0.823	SYNONYMOUS_CODING FANCI UPSTREAM CG13748	TF binding site mE1_TFBS_sens
3L	14674586	3L_14674586_SNP [dm3] 3L_14681486_SNP [dm6]	A	T	3.959e^-4	0.824	INTRON ome
X	19083845	X_19083845_SNP [dm3] X_19189812_SNP [dm6]	G	T	3.961e^-4	0.824	SPLICE_SITE_REGION Mec2 UPSTREAM HP1D3csd INTRON Mec2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5130496	X_5130496_SNP [dm3] X_5236463_SNP [dm6]	A	C	3.969e^-4	0.824	NON_SYNONYMOUS_CODING rg UTR_3_PRIME CG15465
2L	4813435	2L_4813435_SNP [dm3] 2L_4813435_SNP [dm6]	A	G	3.972e^-4	0.824	NON_SYNONYMOUS_CODING CG15629
3L	9233371	3L_9233371_DEL [dm3] 3L_9240271_DEL [dm6]	AA	A	3.981e^-4	0.825	INTERGENIC
3R	6992700	3R_6992700_SNP [dm3] 3R_11166978_SNP [dm6]	C	T	3.989e^-4	0.825	NON_SYNONYMOUS_CODING Ugt86De UPSTREAM Ugt86Dg
X	12783034	X_12783034_SNP [dm3] X_12889001_SNP [dm6]	C	G	3.989e^-4	0.825	INTRON Pde9
3L	10462785	3L_10462785_SNP [dm3] 3L_10469685_SNP [dm6]	A	G	4.008e^-4	0.828	DOWNSTREAM S-Lap3 INTERGENIC
2L	13412286	2L_13412286_SNP [dm3] 2L_13412286_SNP [dm6]	T	A	4.018e^-4	0.829	UPSTREAM CG16848 & 1 other INTERGENIC
2L	17443389	2L_17443389_SNP [dm3] 2L_17443389_SNP [dm6]	T	C	4.029e^-4	0.83	INTRON dl	TF binding site BDTNP1_TFBS_dl
2R	12051292	2R_12051292_INS [dm3] 2R_16163787_INS [dm6]	T	TATTT	4.040e^-4	0.83	INTRON lbk	TF binding site BDTNP1_TFBS_dl
2L	16428836	2L_16428836_SNP [dm3] 2L_16428836_SNP [dm6]	A	G	4.043e^-4	0.83	INTRON CG5888	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16063710	2L_16063710_SNP [dm3] 2L_16063710_SNP [dm6]	A	G	4.044e^-4	0.83	INTRON beat-Ia	TF binding site BDTNP1_TFBS_twi
3R	8930702	3R_8930702_SNP [dm3] 3R_13104980_SNP [dm6]	C	T	4.048e^-4	0.83	INTRON timeout
3L	13607516	3L_13607516_SNP [dm3] 3L_13614416_SNP [dm6]	C	G	4.048e^-4	0.83	INTRON bru-3
3R	6107240	3R_6107240_SNP [dm3] 3R_10281518_SNP [dm6]	A	G	4.056e^-4	0.831	INTRON CG43143
3R	9861678	3R_9861678_SNP [dm3] 3R_14035956_SNP [dm6]	T	A	4.065e^-4	0.831	UTR_5_PRIME CG9922 DOWNSTREAM CG3061	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3607874	3L_3607874_SNP [dm3] 3L_3607874_SNP [dm6]	G	T	4.079e^-4	0.831	UTR_3_PRIME Eip63E
X	10812682	X_10812682_SNP [dm3] X_10918649_SNP [dm6]	T	A	4.086e^-4	0.831	INTRON CG43901
2L	17838125	2L_17838125_SNP [dm3] 2L_17838125_SNP [dm6]	T	C	4.089e^-4	0.831	INTRON CadN2
3R	13137620	3R_13137620_SNP [dm3] 3R_17311898_SNP [dm6]	G	T	4.096e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	14351683	3L_14351683_SNP [dm3] 3L_14358583_SNP [dm6]	A	G	4.101e^-4	0.831	INTRON fz
2L	1719763	2L_1719763_SNP [dm3] 2L_1719763_SNP [dm6]	C	G	4.102e^-4	0.831	INTRON Rim2
X	2598584	X_2598584_SNP [dm3] X_2704551_SNP [dm6]	C	A	4.108e^-4	0.831	UPSTREAM eIF2B-beta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run
2L	2761388	2L_2761388_SNP [dm3] 2L_2761388_SNP [dm6]	G	A	4.111e^-4	0.831	INTRON Trn-SR	TF binding site mE1_TFBS_cad
X	15797193	X_15797193_SNP [dm3] X_15903160_SNP [dm6]	T	C	4.113e^-4	0.831	INTRON shi
2R	14266887	2R_14266887_SNP [dm3] 2R_18379382_SNP [dm6]	G	A	4.115e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_cad
3L	5095180	3L_5095180_SNP [dm3] 3L_5095180_SNP [dm6]	C	A	4.116e^-4	0.831	INTERGENIC
3L	9831551	3L_9831551_SNP [dm3] 3L_9838451_SNP [dm6]	A	C	4.116e^-4	0.831	DOWNSTREAM RasGAP1 INTRON Cdk8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	4243094	3R_4243094_SNP [dm3] 3R_8417372_SNP [dm6]	T	C	4.119e^-4	0.831	INTRON CG45263
3R	19561423	3R_19561423_DEL [dm3] 3R_23735701_DEL [dm6]	AA	A	4.136e^-4	0.832	INTRON Hmgcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5095210	3L_5095210_SNP [dm3] 3L_5095210_SNP [dm6]	G	A	4.136e^-4	0.832	INTERGENIC
3R	10846817	3R_10846817_SNP [dm3] 3R_15021095_SNP [dm6]	T	A	4.154e^-4	0.833	INTERGENIC
2L	6899945	2L_6899945_INS [dm3] 2L_6899945_INS [dm6]	G	GG	4.154e^-4	0.833	INTRON Nlg2
3R	10698537	3R_10698537_SNP [dm3] 3R_14872815_SNP [dm6]	C	T	4.159e^-4	0.833	INTRON btsz
2R	7473199	2R_7473199_SNP [dm3] 2R_11585694_SNP [dm6]	T	A	4.166e^-4	0.833	SYNONYMOUS_CODING tou
X	15400870	X_15400870_SNP [dm3] X_15506837_SNP [dm6]	C	T	4.167e^-4	0.833	INTRON Gmap	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14319218	2L_14319218_SNP [dm3] 2L_14319218_SNP [dm6]	G	T	4.172e^-4	0.833	INTRON wb
2R	11245361	2R_11245361_SNP [dm3] 2R_15357856_SNP [dm6]	A	G	4.174e^-4	0.833	INTRON unc-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	13637022	3R_13637022_SNP [dm3] 3R_17811300_SNP [dm6]	A	C	4.189e^-4	0.833	UPSTREAM tinc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv
3R	18075602	3R_18075602_SNP [dm3] 3R_22249880_SNP [dm6]	C	A	4.201e^-4	0.833	INTRON SKIP
2L	17926164	2L_17926164_SNP [dm3] 2L_17926164_SNP [dm6]	C	G	4.208e^-4	0.833	INTERGENIC
3L	3785304	3L_3785304_SNP [dm3] 3L_3785304_SNP [dm6]	C	T	4.209e^-4	0.833	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_sens mE1_TFBS_Ubx
3L	3430815	3L_3430815_SNP [dm3] 3L_3430815_SNP [dm6]	G	A	4.210e^-4	0.833	INTRON eIF5B
2L	7712641	2L_7712641_SNP [dm3] 2L_7712641_SNP [dm6]	T	C	4.211e^-4	0.833	SYNONYMOUS_CODING Ntl DOWNSTREAM tRNA:Y1:28C	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14414032	2L_14414032_SNP [dm3] 2L_14414032_SNP [dm6]	A	G	4.221e^-4	0.833	INTERGENIC
2L	17938124	2L_17938124_SNP [dm3] 2L_17938124_SNP [dm6]	T	C	4.240e^-4	0.833	DOWNSTREAM CR44399 INTERGENIC
2L	10539414	2L_10539414_SNP [dm3] 2L_10539414_SNP [dm6]	G	A	4.248e^-4	0.833	INTERGENIC
2L	14094710	2L_14094710_SNP [dm3] 2L_14094710_SNP [dm6]	C	A	4.250e^-4	0.833	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	3537363	3L_3537363_SNP [dm3] 3L_3537363_SNP [dm6]	C	G	4.251e^-4	0.833	INTRON Eip63E
3L	16828500	3L_16828500_SNP [dm3] 3L_16835400_SNP [dm6]	G	C	4.264e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18439664	3R_18439664_SNP [dm3] 3R_22613942_SNP [dm6]	G	A	4.267e^-4	0.833	UPSTREAM CG31156 INTRON EF-G2	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7985976	2L_7985976_SNP [dm3] 2L_7985976_SNP [dm6]	C	T	4.269e^-4	0.833	SYNONYMOUS_CODING CG7231 DOWNSTREAM pes	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8651008	2L_8651008_DEL [dm3] 2L_8651008_DEL [dm6]	ATA	A	4.269e^-4	0.833	INTRON Sema-1a
X	5921439	X_5921439_SNP [dm3] X_6027406_SNP [dm6]	A	G	4.270e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	2040738	3L_2040738_DEL [dm3] 3L_2040738_DEL [dm6]	AAGTGTGAATCTA...	A	4.270e^-4	0.833	INTRON sls
3R	6953412	3R_6953412_SNP [dm3] 3R_11127690_SNP [dm6]	G	C	4.271e^-4	0.833	NON_SYNONYMOUS_CODING Ugt86Dd
3R	19564882	3R_19564882_SNP [dm3] 3R_23739160_SNP [dm6]	C	G	4.272e^-4	0.833	INTRON Hmgcr
3R	6999693	3R_6999693_SNP [dm3] 3R_11173971_SNP [dm6]	C	T	4.282e^-4	0.833	SYNONYMOUS_CODING Ugt86Dj
2L	14328462	2L_14328462_SNP [dm3] 2L_14328462_SNP [dm6]	G	C	4.286e^-4	0.833	UTR_5_PRIME ms_2_34Fe DOWNSTREAM wb
2R	9605063	2R_9605063_SNP [dm3] 2R_13717558_SNP [dm6]	A	T	4.287e^-4	0.833	INTRON fas
3R	1583916	3R_1583916_SNP [dm3] 3R_5758194_SNP [dm6]	A	G	4.288e^-4	0.833	NON_SYNONYMOUS_CODING Sec8 DOWNSTREAM CG2082	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	7256282	3R_7256282_SNP [dm3] 3R_11430560_SNP [dm6]	C	G	4.291e^-4	0.833	NON_SYNONYMOUS_CODING CG18643 UTR_3_PRIME CG18643 DOWNSTREAM RpL24-like & 1 other
X	10040121	X_10040121_DEL [dm3] X_10146088_DEL [dm6]	CCATGTGC	C	4.291e^-4	0.833	INTRON CR44894 & 1 other
3L	1359931	3L_1359931_SNP [dm3] 3L_1359931_SNP [dm6]	G	C	4.294e^-4	0.833	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9254100	2L_9254100_SNP [dm3] 2L_9254100_SNP [dm6]	G	A	4.296e^-4	0.833	UTR_3_PRIME lectin-30A UPSTREAM borr
2L	17200914	2L_17200914_SNP [dm3] 2L_17200914_SNP [dm6]	G	A	4.296e^-4	0.833	INTRON beat-IIIc	TF binding site mE1_TFBS_inv
3R	20920947	3R_20920947_SNP [dm3] 3R_25095225_SNP [dm6]	C	T	4.297e^-4	0.833	SYNONYMOUS_CODING fd96Cb	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	17293202	2L_17293202_SNP [dm3] 2L_17293202_SNP [dm6]	T	A	4.305e^-4	0.833	UPSTREAM CG6380 INTERGENIC
2R	4524941	2R_4524941_SNP [dm3] 2R_8637436_SNP [dm6]	G	A	4.310e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6089752	X_6089752_SNP [dm3] X_6195719_SNP [dm6]	G	A	4.318e^-4	0.834	SYNONYMOUS_CODING CG32750 DOWNSTREAM CG32751
2R	18748862	2R_18748862_DEL [dm3] 2R_22861339_DEL [dm6]	TG	T	4.322e^-4	0.834	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	5906962	3R_5906962_SNP [dm3] 3R_10081240_SNP [dm6]	A	C	4.328e^-4	0.834	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	7531845	3R_7531845_SNP [dm3] 3R_11706123_SNP [dm6]	G	T	4.333e^-4	0.834	INTERGENIC
2L	7648468	2L_7648468_SNP [dm3] 2L_7648468_SNP [dm6]	C	A	4.335e^-4	0.834	INTRON Slob
X	8961972	X_8961972_SNP [dm3] X_9067939_SNP [dm6]	G	A	4.338e^-4	0.834	UTR_5_PRIME CG15365
3R	1570012	3R_1570012_SNP [dm3] 3R_5744290_SNP [dm6]	G	T	4.343e^-4	0.834	INTRON Madm
2R	16178715	2R_16178715_SNP [dm3] 2R_20291210_SNP [dm6]	G	A	4.347e^-4	0.834	DOWNSTREAM CkIIbeta2 INTRON Cpr56F
X	16944927	X_16944927_SNP [dm3] X_17050894_SNP [dm6]	G	T	4.360e^-4	0.835	INTRON CG45002
2L	9671463	2L_9671463_SNP [dm3] 2L_9671463_SNP [dm6]	A	G	4.365e^-4	0.835	UPSTREAM CR44150 INTERGENIC
X	7320483	X_7320483_SNP [dm3] X_7426450_SNP [dm6]	T	A	4.380e^-4	0.837	UPSTREAM CG32726 INTERGENIC
2L	8657673	2L_8657673_SNP [dm3] 2L_8657673_SNP [dm6]	T	G	4.384e^-4	0.837	INTRON Sema-1a
3R	10936003	3R_10936003_SNP [dm3] 3R_15110281_SNP [dm6]	A	T	4.393e^-4	0.837	INTRON CG42788	TF binding site BDTNP1_TFBS_twi
3L	12546083	3L_12546083_SNP [dm3] 3L_12552983_SNP [dm6]	G	T	4.394e^-4	0.837	INTRON sowah
3L	11382192	3L_11382192_SNP [dm3] 3L_11389092_SNP [dm6]	G	A	4.399e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19727795	2L_19727795_SNP [dm3] 2L_19727795_SNP [dm6]	A	G	4.401e^-4	0.837	SYNONYMOUS_CODING Lar	TF binding site mE1_TFBS_chinmo
X	16924181	X_16924181_SNP [dm3] X_17030148_SNP [dm6]	G	A	4.403e^-4	0.837	INTRON CG45002
2L	18178017	2L_18178017_SNP [dm3] 2L_18178017_SNP [dm6]	A	G	4.419e^-4	0.838	INTRON CG42750
3L	8386522	3L_8386522_SNP [dm3] 3L_8393422_SNP [dm6]	C	G	4.427e^-4	0.838	SYNONYMOUS_CODING Jon66Cii	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	5914025	3R_5914025_SNP [dm3] 3R_10088303_SNP [dm6]	C	T	4.449e^-4	0.838	INTRON CR45054
3L	2527689	3L_2527689_DEL [dm3] 3L_2527689_DEL [dm6]	TGGCAAATTA	T	4.450e^-4	0.838	UPSTREAM CG32295 INTRON Spn
2L	11706484	2L_11706484_SNP [dm3] 2L_11706484_SNP [dm6]	A	C	4.466e^-4	0.838	INTERGENIC
2L	6937169	2L_6937169_SNP [dm3] 2L_6937169_SNP [dm6]	A	G	4.474e^-4	0.838	INTRON CG18304
3L	15053942	3L_15053942_SNP [dm3] 3L_15060842_SNP [dm6]	C	T	4.477e^-4	0.838	DOWNSTREAM CG13460 INTRON Sytbeta
2R	5107397	2R_5107397_SNP [dm3] 2R_9219892_SNP [dm6]	A	C	4.477e^-4	0.838	INTERGENIC
2L	14410100	2L_14410100_SNP [dm3] 2L_14410100_SNP [dm6]	C	A	4.482e^-4	0.838	UPSTREAM elB DOWNSTREAM CR44733 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2L	17927922	2L_17927922_SNP [dm3] 2L_17927922_SNP [dm6]	G	A	4.486e^-4	0.838	INTERGENIC
3L	14003717	3L_14003717_DEL [dm3] 3L_14010617_DEL [dm6]	AA	A	4.503e^-4	0.838	INTRON upSET	TF binding site mE1_TFBS_cad
X	17157277	X_17157277_SNP [dm3] X_17263244_SNP [dm6]	T	C	4.507e^-4	0.838	INTRON f
2L	8378056	2L_8378056_SNP [dm3] 2L_8378056_SNP [dm6]	A	T	4.507e^-4	0.838	UTR_3_PRIME CG17294 DOWNSTREAM Aats-ala

Missing results

By genomic position
Variant impact
Gene name

mn_Tot_Activity phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results