DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.228e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	5.4801	0.0646

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2958 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	13344168	2L_13344168_SNP [dm3] 2L_13344168_SNP [dm6]	T	C	7.572e^-8	0.082	INTERGENIC
2L	11469389	2L_11469389_SNP [dm3] 2L_11469389_SNP [dm6]	A	G	8.755e^-8	0.082	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6639918	X_6639918_SNP [dm3] X_6745885_SNP [dm6]	T	C	4.677e^-7	0.233	DOWNSTREAM CR44964 EXON CR44895
2R	10233603	2R_10233603_SNP [dm3] 2R_14346098_SNP [dm6]	T	C	4.967e^-7	0.233	INTRON Shroom
3L	3781681	3L_3781681_SNP [dm3] 3L_3781681_SNP [dm6]	C	A	6.826e^-7	0.256	INTRON CG32264	TF binding site BDTNP1_TFBS_twi
2R	10054874	2R_10054874_SNP [dm3] 2R_14167369_SNP [dm6]	G	A	9.098e^-7	0.271	DOWNSTREAM CG8323 INTRON CG18327
X	11342198	X_11342198_DEL [dm3] X_11448165_DEL [dm6]	TTT	C	1.043e^-6	0.271	INTRON Evi5
3R	25850533	3R_25850533_SNP [dm3] 3R_30024811_SNP [dm6]	T	A	1.295e^-6	0.271	INTRON Axn
3R	25850278	3R_25850278_SNP [dm3] 3R_30024556_SNP [dm6]	A	C	1.300e^-6	0.271	UTR_5_PRIME Axn
2R	13717575	2R_13717575_SNP [dm3] 2R_17830070_SNP [dm6]	G	A	1.444e^-6	0.271	INTRON grh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
2R	16221749	2R_16221749_SNP [dm3] 2R_20334244_SNP [dm6]	A	G	1.813e^-6	0.306	INTERGENIC
X	17780001	X_17780001_INS [dm3] X_17885968_INS [dm6]	T	TGTTCAGCGCACCTTAGAAT...	2.601e^-6	0.306	DOWNSTREAM CG12985 INTRON mnb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	18426231	2R_18426231_SNP [dm3] 2R_22538726_SNP [dm6]	A	C	2.704e^-6	0.306	INTRON px
3R	7144180	3R_7144180_SNP [dm3] 3R_11318458_SNP [dm6]	A	G	2.719e^-6	0.306	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2517539	2R_2517539_SNP [dm3] 2R_6630034_SNP [dm6]	T	G	2.878e^-6	0.306	INTRON Vha16-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	16668561	X_16668561_SNP [dm3] X_16774528_SNP [dm6]	A	T	3.123e^-6	0.306	INTRON if	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5520403	3L_5520403_DEL [dm3] 3L_5527303_DEL [dm6]	TAT	A	3.173e^-6	0.306	INTRON Lkr
X	14849169	X_14849169_SNP [dm3] X_14955136_SNP [dm6]	A	G	3.214e^-6	0.306	UPSTREAM eag & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	10420411	2R_10420411_SNP [dm3] 2R_14532906_SNP [dm6]	A	G	3.437e^-6	0.306	INTRON ttv
3R	15762952	3R_15762952_SNP [dm3] 3R_19937230_SNP [dm6]	G	C	3.458e^-6	0.306	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5520397	3L_5520397_DEL [dm3] 3L_5527297_DEL [dm6]	CGG	C	3.521e^-6	0.306	INTRON Lkr
3L	5520423	3L_5520423_SNP [dm3] 3L_5527323_SNP [dm6]	T	A	3.588e^-6	0.306	INTRON Lkr
3L	11909012	3L_11909012_SNP [dm3] 3L_11915912_SNP [dm6]	T	A	4.334e^-6	0.353	INTRON CG44837
X	11342481	X_11342481_SNP [dm3] X_11448448_SNP [dm6]	A	T	5.248e^-6	0.365	INTRON Evi5
2R	1386529	2R_1386529_SNP [dm3] 2R_5499024_SNP [dm6]	T	A	5.325e^-6	0.365	INTRON CG30438
2L	15277889	2L_15277889_SNP [dm3] 2L_15277889_SNP [dm6]	C	T	5.469e^-6	0.365	INTRON CR43682
3R	15762853	3R_15762853_SNP [dm3] 3R_19937131_SNP [dm6]	T	C	5.746e^-6	0.365	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	1446355	3R_1446355_DEL [dm3] 3R_5620633_DEL [dm6]	GTAG	G	5.917e^-6	0.365	INTRON Spec2
2L	1881001	2L_1881001_SNP [dm3] 2L_1881001_SNP [dm6]	G	T	6.160e^-6	0.365	UPSTREAM CG31663 INTRON CG31663
2L	6066980	2L_6066980_SNP [dm3] 2L_6066980_SNP [dm6]	T	A	6.523e^-6	0.365	NON_SYNONYMOUS_CODING CG9147 DOWNSTREAM CG9150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1151800	3L_1151800_DEL [dm3] 3L_1151800_DEL [dm6]	AACAGATTTTCA...	A	6.561e^-6	0.365	INTRON bab2
3L	909746	3L_909746_SNP [dm3] 3L_909746_SNP [dm6]	C	T	6.735e^-6	0.365	NON_SYNONYMOUS_CODING nerfin-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11747369	3L_11747369_SNP [dm3] 3L_11754269_SNP [dm6]	A	C	6.951e^-6	0.365	INTRON CG6024
2L	6067095	2L_6067095_SNP [dm3] 2L_6067095_SNP [dm6]	C	G	7.023e^-6	0.365	SYNONYMOUS_CODING CG9147 DOWNSTREAM CG9150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	18366653	2L_18366653_SNP [dm3] 2L_18366653_SNP [dm6]	C	T	7.200e^-6	0.365	INTRON Fas3
3R	15762788	3R_15762788_SNP [dm3] 3R_19937066_SNP [dm6]	T	C	7.340e^-6	0.365	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16221819	2R_16221819_SNP [dm3] 2R_20334314_SNP [dm6]	G	A	7.406e^-6	0.365	INTERGENIC
3R	15758893	3R_15758893_SNP [dm3] 3R_19933171_SNP [dm6]	C	A	7.483e^-6	0.365	SYNONYMOUS_CODING mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3784944	3L_3784944_SNP [dm3] 3L_3784944_SNP [dm6]	C	A	7.972e^-6	0.365	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11909135	3L_11909135_SNP [dm3] 3L_11916035_SNP [dm6]	T	A	9.015e^-6	0.365	INTRON CG44837
3L	3781686	3L_3781686_SNP [dm3] 3L_3781686_SNP [dm6]	C	T	9.046e^-6	0.365	INTRON CG32264	TF binding site BDTNP1_TFBS_twi
3R	15758742	3R_15758742_SNP [dm3] 3R_19933020_SNP [dm6]	A	G	9.069e^-6	0.365	SYNONYMOUS_CODING mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18006014	2R_18006014_SNP [dm3] 2R_22118509_SNP [dm6]	C	T	9.342e^-6	0.365	INTRON Vrp1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11914483	3L_11914483_SNP [dm3] 3L_11921383_SNP [dm6]	C	A	9.379e^-6	0.365	UPSTREAM CG11588 INTRON CG44837
3L	10685065	3L_10685065_SNP [dm3] 3L_10691965_SNP [dm6]	A	G	9.391e^-6	0.365	UTR_3_PRIME CG11811 DOWNSTREAM CG33493
3L	10133831	3L_10133831_SNP [dm3] 3L_10140731_SNP [dm6]	C	T	9.418e^-6	0.365	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15762150	3R_15762150_SNP [dm3] 3R_19936428_SNP [dm6]	G	C	9.447e^-6	0.365	INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11908998	3L_11908998_SNP [dm3] 3L_11915898_SNP [dm6]	T	C	9.745e^-6	0.365	INTRON CG44837
3R	26649581	3R_26649581_SNP [dm3] 3R_30823859_SNP [dm6]	A	T	1.009e^-5	0.365	INTRON cindr
3L	11909129	3L_11909129_SNP [dm3] 3L_11916029_SNP [dm6]	A	T	1.034e^-5	0.365	INTRON CG44837
3R	18555526	3R_18555526_SNP [dm3] 3R_22729804_SNP [dm6]	A	T	1.044e^-5	0.365	INTRON CG45049	TF binding site mE1_TFBS_sens
X	6640013	X_6640013_SNP [dm3] X_6745980_SNP [dm6]	C	T	1.044e^-5	0.365	DOWNSTREAM CR44964 EXON CR44895
3L	8541498	3L_8541498_SNP [dm3] 3L_8548398_SNP [dm6]	T	A	1.087e^-5	0.365	INTRON rhea	TF binding site mE1_TFBS_inv
X	11327080	X_11327080_SNP [dm3] X_11433047_SNP [dm6]	T	C	1.096e^-5	0.365	UTR_3_PRIME Evi5
3L	7247634	3L_7247634_SNP [dm3] 3L_7254534_SNP [dm6]	C	T	1.111e^-5	0.365	INTRON CG14830
3R	18555520	3R_18555520_SNP [dm3] 3R_22729798_SNP [dm6]	A	G	1.142e^-5	0.365	INTRON CG45049	TF binding site mE1_TFBS_sens
2L	11469466	2L_11469466_SNP [dm3] 2L_11469466_SNP [dm6]	G	T	1.142e^-5	0.365	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11469479	2L_11469479_SNP [dm3] 2L_11469479_SNP [dm6]	A	G	1.142e^-5	0.365	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	1099251	3L_1099251_SNP [dm3] 3L_1099251_SNP [dm6]	T	C	1.171e^-5	0.365	SYNONYMOUS_CODING bab1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_D mE1_TFBS_Trl
3R	1446393	3R_1446393_SNP [dm3] 3R_5620671_SNP [dm6]	C	A	1.196e^-5	0.365	INTRON Spec2
3R	15763029	3R_15763029_SNP [dm3] 3R_19937307_SNP [dm6]	T	G	1.218e^-5	0.365	SYNONYMOUS_CODING Hs6st
3R	25855618	3R_25855618_SNP [dm3] 3R_30029896_SNP [dm6]	G	T	1.228e^-5	0.365	INTRON Axn	TF binding site BDTNP1_TFBS_dl
2L	4596267	2L_4596267_SNP [dm3] 2L_4596267_SNP [dm6]	A	G	1.232e^-5	0.365	INTRON dp
X	17781522	X_17781522_SNP [dm3] X_17887489_SNP [dm6]	G	A	1.253e^-5	0.365	UPSTREAM CG6788 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
X	7892316	X_7892316_SNP [dm3] X_7998283_SNP [dm6]	A	C	1.265e^-5	0.365	UPSTREAM Tbh INTRON Tbh
3R	18863614	3R_18863614_SNP [dm3] 3R_23037892_SNP [dm6]	A	T	1.283e^-5	0.365	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3816723	3L_3816723_SNP [dm3] 3L_3816723_SNP [dm6]	G	A	1.314e^-5	0.368	SYNONYMOUS_CODING Scsalpha UPSTREAM CR45034 & 1 other
3L	8541510	3L_8541510_SNP [dm3] 3L_8548410_SNP [dm6]	T	A	1.346e^-5	0.369	INTRON rhea	TF binding site mE1_TFBS_inv
2L	16601419	2L_16601419_SNP [dm3] 2L_16601419_SNP [dm6]	T	C	1.359e^-5	0.369	UPSTREAM CG42389 INTRON CG42389	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	5269966	3L_5269966_SNP [dm3] 3L_5276866_SNP [dm6]	A	T	1.386e^-5	0.369	INTRON shep	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	11097106	2L_11097106_SNP [dm3] 2L_11097106_SNP [dm6]	A	G	1.398e^-5	0.369	SYNONYMOUS_CODING Ge-1
X	6610574	X_6610574_SNP [dm3] X_6716541_SNP [dm6]	A	G	1.431e^-5	0.373	SYNONYMOUS_CODING CG14441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3898543	X_3898543_SNP [dm3] X_4004510_SNP [dm6]	A	C	1.463e^-5	0.374	INTERGENIC
2L	15278014	2L_15278014_SNP [dm3] 2L_15278014_SNP [dm6]	C	G	1.476e^-5	0.374	INTRON CR43682
2R	12127251	2R_12127251_SNP [dm3] 2R_16239746_SNP [dm6]	T	G	1.533e^-5	0.383	NON_SYNONYMOUS_CODING krimp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16782522	3R_16782522_SNP [dm3] 3R_20956800_SNP [dm6]	T	G	1.618e^-5	0.384	UPSTREAM Atpalpha INTRON Atpalpha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	4121032	3L_4121032_SNP [dm3] 3L_4121032_SNP [dm6]	C	T	1.639e^-5	0.384	INTRON Chd64
3L	3773882	3L_3773882_SNP [dm3] 3L_3773882_SNP [dm6]	G	T	1.646e^-5	0.384	INTRON CG32264
2R	14346376	2R_14346376_SNP [dm3] 2R_18458871_SNP [dm6]	T	A	1.656e^-5	0.384	DOWNSTREAM CG30116 INTRON CG30116
3R	7129194	3R_7129194_SNP [dm3] 3R_11303472_SNP [dm6]	G	A	1.658e^-5	0.384	INTRON CR31386	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11097017	2L_11097017_SNP [dm3] 2L_11097017_SNP [dm6]	A	T	1.701e^-5	0.384	INTRON Ge-1	TF binding site mE1_TFBS_HSA
3R	15382117	3R_15382117_SNP [dm3] 3R_19556395_SNP [dm6]	C	T	1.731e^-5	0.384	INTRON Dys
2L	12979562	2L_12979562_SNP [dm3] 2L_12979562_SNP [dm6]	C	T	1.755e^-5	0.384	SYNONYMOUS_CODING Vha68-3 DOWNSTREAM Vha68-2
3R	20171805	3R_20171805_SNP [dm3] 3R_24346083_SNP [dm6]	A	T	1.766e^-5	0.384	UTR_3_PRIME CG5746
3L	11916430	3L_11916430_SNP [dm3] 3L_11923330_SNP [dm6]	G	C	1.767e^-5	0.384	SYNONYMOUS_CODING CG5718 DOWNSTREAM CG11588 INTRON CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19117745	2R_19117745_SNP [dm3] 2R_23230222_SNP [dm6]	G	T	1.780e^-5	0.384	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	12127227	2R_12127227_SNP [dm3] 2R_16239722_SNP [dm6]	T	C	1.785e^-5	0.384	SYNONYMOUS_CODING krimp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11213150	2R_11213150_SNP [dm3] 2R_15325645_SNP [dm6]	G	A	1.815e^-5	0.384	UTR_3_PRIME CG8157 DOWNSTREAM Arf51F & 1 other	TF binding site BDTNP1_TFBS_dl
2L	18277860	2L_18277860_SNP [dm3] 2L_18277860_SNP [dm6]	G	C	1.844e^-5	0.384	DOWNSTREAM CR44902 INTERGENIC
3L	11745663	3L_11745663_SNP [dm3] 3L_11752563_SNP [dm6]	T	A	1.848e^-5	0.384	DOWNSTREAM Gr68a INTRON CG6024
2R	16221820	2R_16221820_SNP [dm3] 2R_20334315_SNP [dm6]	T	C	1.888e^-5	0.384	INTERGENIC
2R	14611802	2R_14611802_SNP [dm3] 2R_18724297_SNP [dm6]	T	G	1.900e^-5	0.384	INTRON Hs3st-A
X	10142245	X_10142245_SNP [dm3] X_10248212_SNP [dm6]	A	T	1.904e^-5	0.384	INTRON Hk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4361176	2L_4361176_SNP [dm3] 2L_4361176_SNP [dm6]	T	G	1.962e^-5	0.384	UPSTREAM Traf4 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	15762792	3R_15762792_SNP [dm3] 3R_19937070_SNP [dm6]	A	G	1.993e^-5	0.384	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	6563738	3L_6563738_SNP [dm3] 3L_6570638_SNP [dm6]	C	T	2.029e^-5	0.384	INTRON CG18769 & 1 other
3L	11715129	3L_11715129_SNP [dm3] 3L_11722029_SNP [dm6]	A	G	2.037e^-5	0.384	SYNONYMOUS_CODING Bmcp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4121075	3L_4121075_SNP [dm3] 3L_4121075_SNP [dm6]	G	A	2.055e^-5	0.384	INTRON Chd64
3R	11288781	3R_11288781_SNP [dm3] 3R_15463059_SNP [dm6]	G	C	2.056e^-5	0.384	NON_SYNONYMOUS_CODING AdamTS-A INTRON AdamTS-A
3R	23306658	3R_23306658_SNP [dm3] 3R_27480936_SNP [dm6]	A	G	2.079e^-5	0.384	UTR_3_PRIME Cyp6a18 DOWNSTREAM Cyp6a18
3R	7100312	3R_7100312_SNP [dm3] 3R_11274590_SNP [dm6]	C	T	2.093e^-5	0.384	INTRON CR31386
2L	18297221	2L_18297221_SNP [dm3] 2L_18297221_SNP [dm6]	C	T	2.097e^-5	0.384	UTR_3_PRIME CG5790
2L	3292347	2L_3292347_SNP [dm3] 2L_3292347_SNP [dm6]	G	A	2.107e^-5	0.384	UTR_3_PRIME CG9664 INTRON CG9664	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15758959	3R_15758959_SNP [dm3] 3R_19933237_SNP [dm6]	C	T	2.161e^-5	0.39	SYNONYMOUS_CODING mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10570990	3L_10570990_SNP [dm3] 3L_10577890_SNP [dm6]	A	C	2.216e^-5	0.395	INTRON A2bp1
2L	2607542	2L_2607542_SNP [dm3] 2L_2607542_SNP [dm6]	G	A	2.234e^-5	0.395	INTERGENIC
2R	15686404	2R_15686404_SNP [dm3] 2R_19798899_SNP [dm6]	C	T	2.288e^-5	0.397	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11342415	X_11342415_SNP [dm3] X_11448382_SNP [dm6]	A	G	2.297e^-5	0.397	INTRON Evi5
X	11342466	X_11342466_SNP [dm3] X_11448433_SNP [dm6]	T	G	2.314e^-5	0.397	INTRON Evi5
X	16668506	X_16668506_SNP [dm3] X_16774473_SNP [dm6]	T	C	2.360e^-5	0.397	INTRON if	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	16221853	2R_16221853_SNP [dm3] 2R_20334348_SNP [dm6]	C	T	2.367e^-5	0.397	INTERGENIC
3R	1446398	3R_1446398_SNP [dm3] 3R_5620676_SNP [dm6]	A	G	2.371e^-5	0.397	INTRON Spec2
2L	19683676	2L_19683676_SNP [dm3] 2L_19683676_SNP [dm6]	C	T	2.393e^-5	0.397	INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15762280	3R_15762280_SNP [dm3] 3R_19936558_SNP [dm6]	A	T	2.520e^-5	0.405	INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18291582	2L_18291582_DEL [dm3] 2L_18291582_DEL [dm6]	GCGCTGCAAGAATGAGAGCA...	G	2.570e^-5	0.405	UPSTREAM CR44693 & 3 others INTERGENIC
2L	16370776	2L_16370776_SNP [dm3] 2L_16370776_SNP [dm6]	A	T	2.649e^-5	0.405	INTERGENIC
X	17779295	X_17779295_SNP [dm3] X_17885262_SNP [dm6]	G	A	2.659e^-5	0.405	DOWNSTREAM CG12985 INTRON mnb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	20592132	2R_20592132_SNP [dm3] 2R_24704609_SNP [dm6]	T	C	2.689e^-5	0.405	INTRON Mid1	TF binding site mE1_TFBS_chinmo
X	11342443	X_11342443_SNP [dm3] X_11448410_SNP [dm6]	A	G	2.692e^-5	0.405	INTRON Evi5
2L	295068	2L_295068_SNP [dm3] 2L_295068_SNP [dm6]	G	A	2.696e^-5	0.405	UPSTREAM Hop & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
X	11342404	X_11342404_SNP [dm3] X_11448371_SNP [dm6]	A	G	2.696e^-5	0.405	INTRON Evi5
3R	16326372	3R_16326372_SNP [dm3] 3R_20500650_SNP [dm6]	A	G	2.714e^-5	0.405	INTRON Dic2
3R	16326373	3R_16326373_SNP [dm3] 3R_20500651_SNP [dm6]	A	T	2.714e^-5	0.405	INTRON Dic2
3R	15762228	3R_15762228_SNP [dm3] 3R_19936506_SNP [dm6]	A	G	2.722e^-5	0.405	INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11324528	X_11324528_SNP [dm3] X_11430495_SNP [dm6]	C	T	2.727e^-5	0.405	DOWNSTREAM Evi5 & 1 other INTERGENIC
3R	15762195	3R_15762195_SNP [dm3] 3R_19936473_SNP [dm6]	T	C	2.748e^-5	0.405	INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15762119	3R_15762119_SNP [dm3] 3R_19936397_SNP [dm6]	C	A	2.789e^-5	0.405	INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14188548	2R_14188548_SNP [dm3] 2R_18301043_SNP [dm6]	A	T	2.799e^-5	0.405	DOWNSTREAM CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10273191	3L_10273191_SNP [dm3] 3L_10280091_SNP [dm6]	G	A	2.804e^-5	0.405	INTERGENIC
X	7892359	X_7892359_SNP [dm3] X_7998326_SNP [dm6]	A	G	2.822e^-5	0.405	UPSTREAM Tbh INTRON Tbh
2L	14054497	2L_14054497_SNP [dm3] 2L_14054497_SNP [dm6]	C	G	2.871e^-5	0.405	INTRON nAChRalpha5	TF binding site mE1_TFBS_Trl
2R	11326908	2R_11326908_SNP [dm3] 2R_15439403_SNP [dm6]	A	C	2.905e^-5	0.405	INTRON CG43729
3R	7145030	3R_7145030_SNP [dm3] 3R_11319308_SNP [dm6]	A	T	2.932e^-5	0.405	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3913623	3L_3913623_SNP [dm3] 3L_3913623_SNP [dm6]	T	C	2.936e^-5	0.405	SPLICE_SITE_REGION Eip63F-1 INTRON Eip63F-1
X	11342487	X_11342487_SNP [dm3] X_11448454_SNP [dm6]	G	A	2.946e^-5	0.405	INTRON Evi5
2L	11498378	2L_11498378_SNP [dm3] 2L_11498378_SNP [dm6]	C	A	2.991e^-5	0.405	SYNONYMOUS_CODING CG6488	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17047627	3L_17047627_SNP [dm3] 3L_17054527_SNP [dm6]	G	T	2.992e^-5	0.405	UTR_3_PRIME rogdi
2L	6067056	2L_6067056_SNP [dm3] 2L_6067056_SNP [dm6]	T	A	3.000e^-5	0.405	SYNONYMOUS_CODING CG9147 DOWNSTREAM CG9150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	11342455	X_11342455_INS [dm3] X_11448422_INS [dm6]	A	AA	3.019e^-5	0.405	INTRON Evi5
2L	10982724	2L_10982724_SNP [dm3] 2L_10982724_SNP [dm6]	G	T	3.026e^-5	0.405	SYNONYMOUS_CODING piwi DOWNSTREAM SCAR
3R	19675457	3R_19675457_SNP [dm3] 3R_23849735_SNP [dm6]	A	G	3.126e^-5	0.406	UTR_3_PRIME CG34355
X	11327245	X_11327245_SNP [dm3] X_11433212_SNP [dm6]	C	A	3.130e^-5	0.406	UTR_3_PRIME Evi5
2L	10982732	2L_10982732_SNP [dm3] 2L_10982732_SNP [dm6]	G	A	3.135e^-5	0.406	SYNONYMOUS_CODING piwi DOWNSTREAM SCAR
2R	11211667	2R_11211667_SNP [dm3] 2R_15324162_SNP [dm6]	C	T	3.158e^-5	0.406	INTRON Arf51F
2L	6066951	2L_6066951_SNP [dm3] 2L_6066951_SNP [dm6]	T	C	3.161e^-5	0.406	SYNONYMOUS_CODING CG9147 UPSTREAM Fbw5 DOWNSTREAM CG9150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24903144	3R_24903144_SNP [dm3] 3R_29077422_SNP [dm6]	C	T	3.167e^-5	0.406	INTRON CG11873
2L	16370750	2L_16370750_SNP [dm3] 2L_16370750_SNP [dm6]	C	T	3.181e^-5	0.406	INTERGENIC
3R	7095124	3R_7095124_SNP [dm3] 3R_11269402_SNP [dm6]	A	G	3.236e^-5	0.41	DOWNSTREAM CR31386 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	17354545	2L_17354545_SNP [dm3] 2L_17354545_SNP [dm6]	A	G	3.313e^-5	0.417	UPSTREAM CR44345 EXON CR43239
3R	25306275	3R_25306275_DEL [dm3] 3R_29480553_DEL [dm6]	ACA	A	3.360e^-5	0.42	INTRON Ptp99A	TF binding site mE1_TFBS_cad
3R	23308056	3R_23308056_SNP [dm3] 3R_27482334_SNP [dm6]	G	A	3.384e^-5	0.42	UTR_3_PRIME Cyp6a18
2L	3292380	2L_3292380_SNP [dm3] 2L_3292380_SNP [dm6]	A	T	3.410e^-5	0.421	UTR_3_PRIME CG9664 INTRON CG9664	TF binding site mE1_TFBS_cad
3L	7247752	3L_7247752_SNP [dm3] 3L_7254652_SNP [dm6]	A	G	3.450e^-5	0.423	INTRON CG14830
3R	16326396	3R_16326396_SNP [dm3] 3R_20500674_SNP [dm6]	A	C	3.524e^-5	0.428	INTRON Dic2
X	9672654	X_9672654_SNP [dm3] X_9778621_SNP [dm6]	T	G	3.548e^-5	0.428	UPSTREAM CG1354 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	12017792	3R_12017792_SNP [dm3] 3R_16192070_SNP [dm6]	T	A	3.561e^-5	0.428	INTRON sra
X	8947521	X_8947521_SNP [dm3] X_9053488_SNP [dm6]	T	A	3.609e^-5	0.43	UTR_3_PRIME CG42388 DOWNSTREAM CG42388	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2R	11212768	2R_11212768_SNP [dm3] 2R_15325263_SNP [dm6]	A	G	3.621e^-5	0.43	UTR_3_PRIME Arf51F DOWNSTREAM CG8157 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11974738	2L_11974738_SNP [dm3] 2L_11974738_SNP [dm6]	G	A	3.763e^-5	0.442	INTERGENIC
3R	7104693	3R_7104693_SNP [dm3] 3R_11278971_SNP [dm6]	A	T	3.792e^-5	0.442	INTRON CR31386
X	11324512	X_11324512_SNP [dm3] X_11430479_SNP [dm6]	A	G	3.820e^-5	0.442	DOWNSTREAM Evi5 & 1 other INTERGENIC
2L	18301721	2L_18301721_SNP [dm3] 2L_18301721_SNP [dm6]	A	G	3.840e^-5	0.442	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	27145838	3R_27145838_SNP [dm3] 3R_31320116_SNP [dm6]	G	A	3.853e^-5	0.442	INTRON CG34347
X	7883452	X_7883452_SNP [dm3] X_7989419_SNP [dm6]	A	T	3.899e^-5	0.442	INTERGENIC
3R	26056106	3R_26056106_INS [dm3] 3R_30230384_INS [dm6]	T	TCACACACGAT...	3.919e^-5	0.442	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	12599274	2L_12599274_SNP [dm3] 2L_12599274_SNP [dm6]	C	G	3.942e^-5	0.442	INTRON nub
3L	1098987	3L_1098987_SNP [dm3] 3L_1098987_SNP [dm6]	T	C	3.973e^-5	0.442	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	20391898	2L_20391898_SNP [dm3] 2L_20391898_SNP [dm6]	A	G	3.984e^-5	0.442	INTRON CG10947
X	17778512	X_17778512_SNP [dm3] X_17884479_SNP [dm6]	T	A	3.986e^-5	0.442	INTRON mnb & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	910620	3L_910620_SNP [dm3] 3L_910620_SNP [dm6]	C	T	4.040e^-5	0.443	SYNONYMOUS_CODING nerfin-1
X	8850981	X_8850981_SNP [dm3] X_8956948_SNP [dm6]	A	T	4.042e^-5	0.443	INTRON rdgA
X	13968695	X_13968695_INS [dm3] X_14074662_INS [dm6]	A	ACTG	4.062e^-5	0.443	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11909266	3L_11909266_SNP [dm3] 3L_11916166_SNP [dm6]	G	A	4.257e^-5	0.459	INTRON CG44837
3L	3428079	3L_3428079_SNP [dm3] 3L_3428079_SNP [dm6]	T	C	4.264e^-5	0.459	DOWNSTREAM eIF5B INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	12017944	3R_12017944_SNP [dm3] 3R_16192222_SNP [dm6]	G	A	4.317e^-5	0.459	INTRON sra
2L	4749379	2L_4749379_SNP [dm3] 2L_4749379_SNP [dm6]	T	G	4.378e^-5	0.459	INTRON CG15630
2L	10718890	2L_10718890_SNP [dm3] 2L_10718890_SNP [dm6]	G	C	4.395e^-5	0.459	INTERGENIC
3L	5528393	3L_5528393_SNP [dm3] 3L_5535293_SNP [dm6]	G	A	4.454e^-5	0.459	INTRON CG13285
2R	14207773	2R_14207773_SNP [dm3] 2R_18320268_SNP [dm6]	G	T	4.462e^-5	0.459	INTRON sbb
3R	11288894	3R_11288894_SNP [dm3] 3R_15463172_SNP [dm6]	G	C	4.513e^-5	0.459	UTR_5_PRIME AdamTS-A INTRON AdamTS-A
3R	10412814	3R_10412814_SNP [dm3] 3R_14587092_SNP [dm6]	C	G	4.531e^-5	0.459	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15344753	3L_15344753_SNP [dm3] 3L_15351653_SNP [dm6]	A	C	4.544e^-5	0.459	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11469478	2L_11469478_SNP [dm3] 2L_11469478_SNP [dm6]	C	T	4.551e^-5	0.459	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	4370379	2L_4370379_SNP [dm3] 2L_4370379_SNP [dm6]	G	A	4.582e^-5	0.459	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7405363	3L_7405363_SNP [dm3] 3L_7412263_SNP [dm6]	T	G	4.609e^-5	0.459	INTERGENIC
2L	4370397	2L_4370397_SNP [dm3] 2L_4370397_SNP [dm6]	C	T	4.630e^-5	0.459	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5444781	2L_5444781_SNP [dm3] 2L_5444781_SNP [dm6]	A	T	4.633e^-5	0.459	INTERGENIC
X	20145500	X_20145500_SNP [dm3] X_20274474_SNP [dm6]	C	T	4.658e^-5	0.459	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	21240896	3R_21240896_DEL [dm3] 3R_25415174_DEL [dm6]	TT	T	4.659e^-5	0.459	INTRON Fur1	TF binding site mE1_TFBS_inv
3R	26649571	3R_26649571_SNP [dm3] 3R_30823849_SNP [dm6]	T	C	4.667e^-5	0.459	INTRON cindr
2L	5445375	2L_5445375_SNP [dm3] 2L_5445375_SNP [dm6]	G	C	4.678e^-5	0.459	INTERGENIC
2L	11552710	2L_11552710_SNP [dm3] 2L_11552710_SNP [dm6]	G	T	4.738e^-5	0.461	INTERGENIC
3R	15762404	3R_15762404_SNP [dm3] 3R_19936682_SNP [dm6]	T	C	4.739e^-5	0.461	INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15284900	2L_15284900_SNP [dm3] 2L_15284900_SNP [dm6]	A	G	4.792e^-5	0.463	UPSTREAM CG15263 INTERGENIC
3R	16326389	3R_16326389_SNP [dm3] 3R_20500667_SNP [dm6]	T	C	4.849e^-5	0.463	INTRON Dic2
X	14849113	X_14849113_SNP [dm3] X_14955080_SNP [dm6]	G	C	4.852e^-5	0.463	UTR_5_PRIME CG9030 UPSTREAM eag	TF binding site mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	4724506	2L_4724506_SNP [dm3] 2L_4724506_SNP [dm6]	G	T	4.881e^-5	0.463	INTERGENIC
3R	16326391	3R_16326391_SNP [dm3] 3R_20500669_SNP [dm6]	A	G	4.895e^-5	0.463	INTRON Dic2
2L	3292374	2L_3292374_SNP [dm3] 2L_3292374_SNP [dm6]	A	G	4.954e^-5	0.463	UTR_3_PRIME CG9664 INTRON CG9664	TF binding site mE1_TFBS_cad
3L	18210648	3L_18210648_SNP [dm3] 3L_18217548_SNP [dm6]	C	A	5.008e^-5	0.463	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18786360	2R_18786360_SNP [dm3] 2R_22898837_SNP [dm6]	G	A	5.026e^-5	0.463	INTRON nahoda
2R	10007977	2R_10007977_SNP [dm3] 2R_14120472_SNP [dm6]	C	G	5.067e^-5	0.463	INTRON Prosap	TF binding site BDTNP1_TFBS_prd
2L	5447943	2L_5447943_SNP [dm3] 2L_5447943_SNP [dm6]	T	A	5.082e^-5	0.463	INTERGENIC
2L	4639407	2L_4639407_SNP [dm3] 2L_4639407_SNP [dm6]	T	A	5.084e^-5	0.463	INTERGENIC
2L	11465002	2L_11465002_SNP [dm3] 2L_11465002_SNP [dm6]	C	A	5.094e^-5	0.463	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26056100	3R_26056100_INS [dm3] 3R_30230378_INS [dm6]	G	GA	5.098e^-5	0.463	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	3374848	X_3374848_SNP [dm3] X_3480815_SNP [dm6]	T	C	5.112e^-5	0.463	INTRON CR44999 & 1 other
2L	10718893	2L_10718893_DEL [dm3] 2L_10718893_DEL [dm6]	GTT	G	5.134e^-5	0.463	INTERGENIC
2L	6067062	2L_6067062_SNP [dm3] 2L_6067062_SNP [dm6]	T	G	5.181e^-5	0.465	SYNONYMOUS_CODING CG9147 DOWNSTREAM CG9150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	6066675	2L_6066675_SNP [dm3] 2L_6066675_SNP [dm6]	C	T	5.245e^-5	0.469	SYNONYMOUS_CODING CG9147 UPSTREAM Fbw5 DOWNSTREAM CG9150	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9975233	3R_9975233_SNP [dm3] 3R_14149511_SNP [dm6]	C	T	5.290e^-5	0.47	SYNONYMOUS_CODING CG14355
2L	3292398	2L_3292398_SNP [dm3] 2L_3292398_SNP [dm6]	G	A	5.356e^-5	0.472	UTR_3_PRIME CG9664 INTRON CG9664	TF binding site mE1_TFBS_cad
X	11372451	X_11372451_SNP [dm3] X_11478418_SNP [dm6]	T	C	5.405e^-5	0.472	SYNONYMOUS_CODING Cyp4g15
X	3374846	X_3374846_SNP [dm3] X_3480813_SNP [dm6]	T	A	5.443e^-5	0.472	INTRON CR44999 & 1 other
3R	23420698	3R_23420698_SNP [dm3] 3R_27594976_SNP [dm6]	T	C	5.467e^-5	0.472	INTRON CG5639	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3R	25264899	3R_25264899_SNP [dm3] 3R_29439177_SNP [dm6]	A	C	5.476e^-5	0.472	INTRON Ptp99A
3R	15759139	3R_15759139_SNP [dm3] 3R_19933417_SNP [dm6]	T	C	5.479e^-5	0.472	SYNONYMOUS_CODING mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12183939	2R_12183939_SNP [dm3] 2R_16296434_SNP [dm6]	A	G	5.498e^-5	0.472	SYNONYMOUS_CODING Atg9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6540272	3L_6540272_DEL [dm3] 3L_6547172_DEL [dm6]	TTG	T	5.521e^-5	0.472	INTRON sfl
2L	6067349	2L_6067349_SNP [dm3] 2L_6067349_SNP [dm6]	C	A	5.535e^-5	0.472	SYNONYMOUS_CODING CG9147 DOWNSTREAM CG9150	TF binding site mE1_TFBS_inv
2R	14663907	2R_14663907_SNP [dm3] 2R_18776402_SNP [dm6]	A	G	5.588e^-5	0.473	SYNONYMOUS_CODING CG15093 EXON CR43964	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10532182	2L_10532182_SNP [dm3] 2L_10532182_SNP [dm6]	A	G	5.624e^-5	0.473	DOWNSTREAM Lip4 INTRON CG18301
2L	11465006	2L_11465006_DEL [dm3] 2L_11465006_DEL [dm6]	AA	A	5.662e^-5	0.473	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11914498	3L_11914498_SNP [dm3] 3L_11921398_SNP [dm6]	A	C	5.671e^-5	0.473	UPSTREAM CG11588 INTRON CG44837
3L	12293890	3L_12293890_SNP [dm3] 3L_12300790_SNP [dm6]	T	G	5.673e^-5	0.473	UPSTREAM CR44550 INTERGENIC
X	13968673	X_13968673_DEL [dm3] X_14074640_DEL [dm6]	ACGGCGATTCAAGA...	A	5.752e^-5	0.477	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9186358	3L_9186358_SNP [dm3] 3L_9193258_SNP [dm6]	A	G	5.820e^-5	0.479	INTERGENIC
3R	18863836	3R_18863836_SNP [dm3] 3R_23038114_SNP [dm6]	A	G	5.861e^-5	0.479	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	294717	2L_294717_SNP [dm3] 2L_294717_SNP [dm6]	T	C	5.896e^-5	0.479	UPSTREAM Hop & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	294234	2L_294234_SNP [dm3] 2L_294234_SNP [dm6]	G	A	5.944e^-5	0.479	SYNONYMOUS_CODING U2af38 UPSTREAM Hop	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	27143851	3R_27143851_SNP [dm3] 3R_31318129_SNP [dm6]	G	T	5.959e^-5	0.479	INTRON CG34347
3R	8912626	3R_8912626_SNP [dm3] 3R_13086904_SNP [dm6]	T	C	5.986e^-5	0.479	DOWNSTREAM CR44967 & 1 other INTERGENIC
2L	19239422	2L_19239422_SNP [dm3] 2L_19239422_SNP [dm6]	T	C	6.065e^-5	0.479	INTERGENIC
2L	3310460	2L_3310460_INS [dm3] 2L_3310460_INS [dm6]	T	TTC	6.112e^-5	0.479	INTRON CG3277 & 1 other
2L	18330531	2L_18330531_INS [dm3] 2L_18330531_INS [dm6]	T	TCCATGGCCAT...	6.125e^-5	0.479	INTRON Fas3
2R	17024971	2R_17024971_SNP [dm3] 2R_21137466_SNP [dm6]	T	C	6.135e^-5	0.479	INTRON Magi
3L	3781720	3L_3781720_SNP [dm3] 3L_3781720_SNP [dm6]	G	A	6.159e^-5	0.479	INTRON CG32264	TF binding site BDTNP1_TFBS_twi
3R	26490766	3R_26490766_SNP [dm3] 3R_30665044_SNP [dm6]	T	A	6.222e^-5	0.479	EXON CR45191
2L	16601013	2L_16601013_SNP [dm3] 2L_16601013_SNP [dm6]	C	T	6.231e^-5	0.479	UPSTREAM CG42389 INTRON CG42389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	13242623	3L_13242623_SNP [dm3] 3L_13249523_SNP [dm6]	G	T	6.243e^-5	0.479	UPSTREAM tRNA:D2:69F & 1 other INTRON caps
X	15328021	X_15328021_INS [dm3] X_15433988_INS [dm6]	T	TAATAT	6.289e^-5	0.479	INTRON Cngl	TF binding site mE1_TFBS_inv
2R	18105669	2R_18105669_SNP [dm3] 2R_22218164_SNP [dm6]	A	G	6.290e^-5	0.479	SYNONYMOUS_CODING CG30278 DOWNSTREAM ari-2 & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_chinmo
2L	14504715	2L_14504715_SNP [dm3] 2L_14504715_SNP [dm6]	C	A	6.295e^-5	0.479	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	11342388	X_11342388_INS [dm3] X_11448355_INS [dm6]	A	ACATGAAATCAAAACATTCG...	6.298e^-5	0.479	INTRON Evi5
3R	15762311	3R_15762311_SNP [dm3] 3R_19936589_SNP [dm6]	A	G	6.321e^-5	0.479	INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10706022	2L_10706022_SNP [dm3] 2L_10706022_SNP [dm6]	A	T	6.375e^-5	0.479	INTRON Lip2
3R	16326397	3R_16326397_SNP [dm3] 3R_20500675_SNP [dm6]	T	G	6.377e^-5	0.479	INTRON Dic2
3L	11715086	3L_11715086_SNP [dm3] 3L_11721986_SNP [dm6]	T	A	6.407e^-5	0.479	INTRON Bmcp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13062814	X_13062814_SNP [dm3] X_13168781_SNP [dm6]	G	A	6.410e^-5	0.479	INTRON CG34411
X	15645010	X_15645010_SNP [dm3] X_15750977_SNP [dm6]	G	A	6.442e^-5	0.479	UTR_3_PRIME CG8239 DOWNSTREAM Graf	TF binding site mE1_TFBS_cad
2R	16930926	2R_16930926_SNP [dm3] 2R_21043421_SNP [dm6]	C	T	6.473e^-5	0.479	INTERGENIC
2R	16931917	2R_16931917_SNP [dm3] 2R_21044412_SNP [dm6]	T	G	6.531e^-5	0.479	INTERGENIC
2L	7919746	2L_7919746_SNP [dm3] 2L_7919746_SNP [dm6]	A	T	6.539e^-5	0.479	INTRON Snoo
2L	10704259	2L_10704259_SNP [dm3] 2L_10704259_SNP [dm6]	A	T	6.568e^-5	0.479	SYNONYMOUS_CODING CG6415 INTRON Lip2	TF binding site mE1_TFBS_chinmo
2L	5353284	2L_5353284_SNP [dm3] 2L_5353284_SNP [dm6]	G	A	6.580e^-5	0.479	INTRON nompC
X	1042632	X_1042632_SNP [dm3] X_1148599_SNP [dm6]	G	T	6.582e^-5	0.479	INTERGENIC
2L	6066933	2L_6066933_SNP [dm3] 2L_6066933_SNP [dm6]	C	G	6.614e^-5	0.479	SYNONYMOUS_CODING CG9147 UPSTREAM Fbw5 DOWNSTREAM CG9150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10718705	2L_10718705_SNP [dm3] 2L_10718705_SNP [dm6]	G	C	6.678e^-5	0.479	INTERGENIC
2R	19726397	2R_19726397_SNP [dm3] 2R_23838874_SNP [dm6]	C	T	6.696e^-5	0.479	UTR_3_PRIME CG5549
3R	10234379	3R_10234379_SNP [dm3] 3R_14408657_SNP [dm6]	T	C	6.745e^-5	0.479	INTRON cv-c
2L	6067364	2L_6067364_SNP [dm3] 2L_6067364_SNP [dm6]	C	T	6.821e^-5	0.479	SYNONYMOUS_CODING CG9147 DOWNSTREAM CG9150	TF binding site mE1_TFBS_inv
2R	17005059	2R_17005059_SNP [dm3] 2R_21117554_SNP [dm6]	T	A	6.864e^-5	0.479	UPSTREAM CG9394 INTRON ktub
2L	1568794	2L_1568794_INS [dm3] 2L_1568794_INS [dm6]	T	TA	6.865e^-5	0.479	INTRON haf
2R	4522699	2R_4522699_INS [dm3] 2R_8635194_INS [dm6]	T	TCGGTGGTTTGGTGGTTCGG...	6.910e^-5	0.479	INTERGENIC	TF binding site mE1_TFBS_cad
2R	1884869	2R_1884869_SNP [dm3] 2R_5997364_SNP [dm6]	T	C	6.920e^-5	0.479	INTRON Src42A
3L	15044561	3L_15044561_SNP [dm3] 3L_15051461_SNP [dm6]	G	A	6.962e^-5	0.479	UPSTREAM CG12310 & 1 other DOWNSTREAM CG13461 INTRON Sytbeta
2R	1373213	2R_1373213_SNP [dm3] 2R_5485708_SNP [dm6]	G	A	6.979e^-5	0.479	INTRON CG30440	transposable element FlyBase
2L	5444877	2L_5444877_SNP [dm3] 2L_5444877_SNP [dm6]	A	C	6.990e^-5	0.479	INTERGENIC
2R	19278350	2R_19278350_SNP [dm3] 2R_23390827_SNP [dm6]	G	C	6.990e^-5	0.479	INTRON CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18297760	2L_18297760_SNP [dm3] 2L_18297760_SNP [dm6]	C	A	7.008e^-5	0.479	DOWNSTREAM CG5790 INTERGENIC
X	13968747	X_13968747_SNP [dm3] X_14074714_SNP [dm6]	A	T	7.067e^-5	0.479	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2878649	2L_2878649_SNP [dm3] 2L_2878649_SNP [dm6]	A	C	7.067e^-5	0.479	SYNONYMOUS_CODING CG31950 UPSTREAM betaggt-II & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	9864494	2L_9864494_SNP [dm3] 2L_9864494_SNP [dm6]	T	C	7.077e^-5	0.479	INTRON nAChRalpha6
3R	24412297	3R_24412297_SNP [dm3] 3R_28586575_SNP [dm6]	C	G	7.080e^-5	0.479	EXON MRE23	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
2L	9443161	2L_9443161_SNP [dm3] 2L_9443161_SNP [dm6]	G	C	7.099e^-5	0.479	INTRON numb
2R	14971801	2R_14971801_SNP [dm3] 2R_19084296_SNP [dm6]	A	T	7.114e^-5	0.479	INTRON 5-HT1A
2L	9167652	2L_9167652_SNP [dm3] 2L_9167652_SNP [dm6]	T	A	7.126e^-5	0.479	INTRON tai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	7165662	3L_7165662_SNP [dm3] 3L_7172562_SNP [dm6]	G	T	7.177e^-5	0.479	SYNONYMOUS_CODING Dscam2 INTRON Dscam2
2L	437482	2L_437482_SNP [dm3] 2L_437482_SNP [dm6]	C	T	7.188e^-5	0.479	INTRON ex
3R	4101691	3R_4101691_SNP [dm3] 3R_8275969_SNP [dm6]	A	G	7.240e^-5	0.479	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	16784933	3R_16784933_SNP [dm3] 3R_20959211_SNP [dm6]	C	T	7.240e^-5	0.479	INTRON Atpalpha
3L	9545295	3L_9545295_SNP [dm3] 3L_9552195_SNP [dm6]	G	T	7.287e^-5	0.479	INTRON CG42673
2R	14473364	2R_14473364_DEL [dm3] 2R_18585859_DEL [dm6]	AACGCGATCGGGATCTGGAA...	A	7.340e^-5	0.479	INTRON GEFmeso	TF binding site mE1_TFBS_sens
3L	11744106	3L_11744106_SNP [dm3] 3L_11751006_SNP [dm6]	C	A	7.363e^-5	0.479	UPSTREAM Gr68a INTRON CG6024
3L	5520364	3L_5520364_SNP [dm3] 3L_5527264_SNP [dm6]	A	C	7.415e^-5	0.479	INTRON Lkr	insulator Insulator_Class_II.mE01
2L	11096075	2L_11096075_SNP [dm3] 2L_11096075_SNP [dm6]	G	A	7.453e^-5	0.479	SYNONYMOUS_CODING Ge-1 DOWNSTREAM CG4705	TF binding site mE1_TFBS_HSA
3R	2815871	3R_2815871_SNP [dm3] 3R_6990149_SNP [dm6]	G	A	7.459e^-5	0.479	INTRON Antp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5890099	2L_5890099_SNP [dm3] 2L_5890099_SNP [dm6]	G	C	7.470e^-5	0.479	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6520693	2L_6520693_SNP [dm3] 2L_6520693_SNP [dm6]	C	T	7.479e^-5	0.479	INTRON CG31637
2L	5626224	2L_5626224_SNP [dm3] 2L_5626224_SNP [dm6]	A	C	7.486e^-5	0.479	DOWNSTREAM CG31646 INTERGENIC
3R	20173591	3R_20173591_SNP [dm3] 3R_24347869_SNP [dm6]	G	C	7.493e^-5	0.479	SYNONYMOUS_CODING CG5746	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10665744	2L_10665744_SNP [dm3] 2L_10665744_SNP [dm6]	A	T	7.529e^-5	0.479	INTRON CG31871
3R	16326399	3R_16326399_SNP [dm3] 3R_20500677_SNP [dm6]	T	G	7.537e^-5	0.479	INTRON Dic2
3R	9829670	3R_9829670_SNP [dm3] 3R_14003948_SNP [dm6]	T	C	7.588e^-5	0.479	INTRON rdx
X	11341625	X_11341625_SNP [dm3] X_11447592_SNP [dm6]	G	A	7.596e^-5	0.479	INTRON Evi5	TF binding site mE1_TFBS_kn
3R	16326393	3R_16326393_SNP [dm3] 3R_20500671_SNP [dm6]	T	G	7.609e^-5	0.479	INTRON Dic2
3R	16326394	3R_16326394_SNP [dm3] 3R_20500672_SNP [dm6]	A	T	7.609e^-5	0.479	INTRON Dic2
X	10057813	X_10057813_SNP [dm3] X_10163780_SNP [dm6]	T	A	7.612e^-5	0.479	INTRON CR44894 & 1 other
2L	18330573	2L_18330573_SNP [dm3] 2L_18330573_SNP [dm6]	T	A	7.668e^-5	0.481	INTRON Fas3
2R	9150904	2R_9150904_SNP [dm3] 2R_13263399_SNP [dm6]	C	T	7.715e^-5	0.482	INTRON CG42319
2L	10983653	2L_10983653_SNP [dm3] 2L_10983653_SNP [dm6]	A	G	7.788e^-5	0.485	INTRON piwi
2R	16227109	2R_16227109_SNP [dm3] 2R_20339604_SNP [dm6]	G	A	7.813e^-5	0.485	INTERGENIC
2R	9150920	2R_9150920_SNP [dm3] 2R_13263415_SNP [dm6]	G	A	7.890e^-5	0.488	INTRON CG42319
2R	7711744	2R_7711744_SNP [dm3] 2R_11824239_SNP [dm6]	G	T	7.903e^-5	0.488	INTERGENIC	TF binding site mE1_TFBS_cad
2L	7919744	2L_7919744_SNP [dm3] 2L_7919744_SNP [dm6]	C	T	7.962e^-5	0.488	INTRON Snoo
2L	11572507	2L_11572507_SNP [dm3] 2L_11572507_SNP [dm6]	T	G	7.963e^-5	0.488	INTERGENIC
3R	21852952	3R_21852952_SNP [dm3] 3R_26027230_SNP [dm6]	C	G	8.024e^-5	0.489	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3424958	2L_3424958_SNP [dm3] 2L_3424958_SNP [dm6]	G	A	8.096e^-5	0.489	INTRON pgant2
3R	12102774	3R_12102774_SNP [dm3] 3R_16277052_SNP [dm6]	T	C	8.099e^-5	0.489	INTRON gish	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6066939	2L_6066939_SNP [dm3] 2L_6066939_SNP [dm6]	A	G	8.140e^-5	0.489	SYNONYMOUS_CODING CG9147 UPSTREAM Fbw5 DOWNSTREAM CG9150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6448542	2R_6448542_SNP [dm3] 2R_10561037_SNP [dm6]	G	A	8.178e^-5	0.489	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	21251977	3R_21251977_DEL [dm3] 3R_25426255_DEL [dm6]	GGCCGATAGTGA...	G	8.196e^-5	0.489	INTRON Fur1
2L	13974306	2L_13974306_SNP [dm3] 2L_13974306_SNP [dm6]	A	G	8.210e^-5	0.489	NON_SYNONYMOUS_CODING NimC1
X	5406030	X_5406030_SNP [dm3] X_5511997_SNP [dm6]	T	A	8.228e^-5	0.489	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9856794	2L_9856794_SNP [dm3] 2L_9856794_SNP [dm6]	T	A	8.267e^-5	0.489	INTRON nAChRalpha6
X	6639874	X_6639874_SNP [dm3] X_6745841_SNP [dm6]	C	T	8.268e^-5	0.489	DOWNSTREAM CR44964 EXON CR44895
2L	6066948	2L_6066948_SNP [dm3] 2L_6066948_SNP [dm6]	C	T	8.294e^-5	0.489	SYNONYMOUS_CODING CG9147 UPSTREAM Fbw5 DOWNSTREAM CG9150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13355292	2L_13355292_SNP [dm3] 2L_13355292_SNP [dm6]	A	G	8.347e^-5	0.489	UPSTREAM CG9395 INTERGENIC
3R	16326387	3R_16326387_SNP [dm3] 3R_20500665_SNP [dm6]	T	A	8.398e^-5	0.489	INTRON Dic2
X	14849109	X_14849109_SNP [dm3] X_14955076_SNP [dm6]	A	G	8.424e^-5	0.489	UTR_5_PRIME CG9030 UPSTREAM eag	TF binding site mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	26551002	3R_26551002_SNP [dm3] 3R_30725280_SNP [dm6]	C	A	8.490e^-5	0.489	UPSTREAM CG1340 INTERGENIC
3R	26551004	3R_26551004_SNP [dm3] 3R_30725282_SNP [dm6]	A	G	8.490e^-5	0.489	UPSTREAM CG1340 INTERGENIC
3R	26551006	3R_26551006_SNP [dm3] 3R_30725284_SNP [dm6]	T	G	8.490e^-5	0.489	UPSTREAM CG1340 INTERGENIC
2R	9761695	2R_9761695_SNP [dm3] 2R_13874190_SNP [dm6]	A	C	8.493e^-5	0.489	INTRON shot	TF binding site mE1_TFBS_cad
3R	15762310	3R_15762310_SNP [dm3] 3R_19936588_SNP [dm6]	C	T	8.496e^-5	0.489	INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8587305	2R_8587305_SNP [dm3] 2R_12699800_SNP [dm6]	C	T	8.513e^-5	0.489	UPSTREAM wuc INTERGENIC
2L	4342239	2L_4342239_SNP [dm3] 2L_4342239_SNP [dm6]	G	C	8.521e^-5	0.489	INTRON Atet
2R	13865126	2R_13865126_SNP [dm3] 2R_17977621_SNP [dm6]	T	C	8.674e^-5	0.492	SYNONYMOUS_CODING dpr13
2L	9167653	2L_9167653_SNP [dm3] 2L_9167653_SNP [dm6]	T	A	8.708e^-5	0.492	INTRON tai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	6520678	2L_6520678_SNP [dm3] 2L_6520678_SNP [dm6]	A	G	8.731e^-5	0.492	INTRON CG31637
2L	11138656	2L_11138656_SNP [dm3] 2L_11138656_SNP [dm6]	G	T	8.774e^-5	0.492	DOWNSTREAM Gyc32E & 1 other INTERGENIC
2L	4268108	2L_4268108_SNP [dm3] 2L_4268108_SNP [dm6]	G	T	8.779e^-5	0.492	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7048295	3L_7048295_SNP [dm3] 3L_7055195_SNP [dm6]	G	T	8.786e^-5	0.492	INTERGENIC
3R	10504827	3R_10504827_SNP [dm3] 3R_14679105_SNP [dm6]	C	T	8.794e^-5	0.492	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	26928753	3R_26928753_SNP [dm3] 3R_31103031_SNP [dm6]	G	A	8.824e^-5	0.492	INTERGENIC
3R	20260481	3R_20260481_SNP [dm3] 3R_24434759_SNP [dm6]	C	T	8.846e^-5	0.492	INTRON nAChRalpha1
3R	12017853	3R_12017853_SNP [dm3] 3R_16192131_SNP [dm6]	A	T	8.867e^-5	0.492	INTRON sra
3L	11908832	3L_11908832_SNP [dm3] 3L_11915732_SNP [dm6]	C	T	8.893e^-5	0.492	INTRON CG44837
3L	7923958	3L_7923958_SNP [dm3] 3L_7930858_SNP [dm6]	T	C	8.919e^-5	0.492	INTRON syd
X	11342483	X_11342483_SNP [dm3] X_11448450_SNP [dm6]	T	A	8.926e^-5	0.492	INTRON Evi5
3R	18525215	3R_18525215_SNP [dm3] 3R_22699493_SNP [dm6]	A	C	9.061e^-5	0.496	SYNONYMOUS_CODING Cyp6d4
2R	9150385	2R_9150385_SNP [dm3] 2R_13262880_SNP [dm6]	T	A	9.079e^-5	0.496	INTRON CG42319
X	21292492	X_21292492_SNP [dm3] X_21421465_SNP [dm6]	G	A	9.093e^-5	0.496	DOWNSTREAM CG42343 INTERGENIC	transposable element FlyBase
3L	3816708	3L_3816708_SNP [dm3] 3L_3816708_SNP [dm6]	G	A	9.144e^-5	0.496	SYNONYMOUS_CODING Scsalpha UPSTREAM CR45034 & 1 other
2L	5444822	2L_5444822_INS [dm3] 2L_5444822_INS [dm6]	G	GGGCATTA	9.168e^-5	0.496	INTERGENIC
2L	5444827	2L_5444827_MNP [dm3] 2L_5444827_MNP [dm6]	GAA	TTG	9.168e^-5	0.496	INTERGENIC
3R	19036600	3R_19036600_SNP [dm3] 3R_23210878_SNP [dm6]	G	A	9.181e^-5	0.496	INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	1104240	3L_1104240_SNP [dm3] 3L_1104240_SNP [dm6]	A	G	9.286e^-5	0.496	INTERGENIC	TF binding site mE1_TFBS_cad
X	11565363	X_11565363_SNP [dm3] X_11671330_SNP [dm6]	C	T	9.333e^-5	0.496	SYNONYMOUS_CODING Ptp10D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	10422027	2R_10422027_SNP [dm3] 2R_14534522_SNP [dm6]	C	A	9.348e^-5	0.496	INTRON ttv
3R	7022599	3R_7022599_SNP [dm3] 3R_11196877_SNP [dm6]	T	G	9.351e^-5	0.496	UTR_3_PRIME CG18577 UPSTREAM cu
3L	7584147	3L_7584147_SNP [dm3] 3L_7591047_SNP [dm6]	A	G	9.369e^-5	0.496	UPSTREAM CG7716 INTERGENIC
3R	26551083	3R_26551083_SNP [dm3] 3R_30725361_SNP [dm6]	C	A	9.385e^-5	0.496	UPSTREAM CG1340 INTERGENIC
2R	13937976	2R_13937976_SNP [dm3] 2R_18050471_SNP [dm6]	T	G	9.394e^-5	0.496	SYNONYMOUS_CODING Muc55B UPSTREAM CG14495	TF binding site mE1_TFBS_sens
2L	19281417	2L_19281417_SNP [dm3] 2L_19281417_SNP [dm6]	C	G	9.407e^-5	0.496	INTERGENIC
3L	15860058	3L_15860058_INS [dm3] 3L_15866958_INS [dm6]	C	CTACGGC	9.412e^-5	0.496	INTRON pHCl
2R	7706600	2R_7706600_SNP [dm3] 2R_11819095_SNP [dm6]	T	G	9.452e^-5	0.496	INTERGENIC
3L	1108532	3L_1108532_SNP [dm3] 3L_1108532_SNP [dm6]	T	C	9.459e^-5	0.496	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26840047	3R_26840047_SNP [dm3] 3R_31014325_SNP [dm6]	A	G	9.523e^-5	0.496	INTRON 5-HT7
2L	4344585	2L_4344585_SNP [dm3] 2L_4344585_SNP [dm6]	G	T	9.536e^-5	0.496	UTR_3_PRIME Atet DOWNSTREAM mir-1005
2L	15277628	2L_15277628_SNP [dm3] 2L_15277628_SNP [dm6]	G	A	9.551e^-5	0.496	UPSTREAM CR43682 INTERGENIC
2R	1913502	2R_1913502_SNP [dm3] 2R_6025997_SNP [dm6]	C	T	9.588e^-5	0.496	DOWNSTREAM SCAP INTERGENIC
3L	6677443	3L_6677443_SNP [dm3] 3L_6684343_SNP [dm6]	T	A	9.599e^-5	0.496	INTERGENIC
X	3239521	X_3239521_SNP [dm3] X_3345488_SNP [dm6]	A	G	9.677e^-5	0.497	INTRON CR44886	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20330172	3R_20330172_SNP [dm3] 3R_24504450_SNP [dm6]	C	G	9.750e^-5	0.497	INTERGENIC
2L	14981546	2L_14981546_SNP [dm3] 2L_14981546_SNP [dm6]	T	C	9.754e^-5	0.497	INTRON mol
2R	4587472	2R_4587472_SNP [dm3] 2R_8699967_SNP [dm6]	A	G	9.817e^-5	0.497	DOWNSTREAM CG8584 INTERGENIC
3L	7247779	3L_7247779_SNP [dm3] 3L_7254679_SNP [dm6]	C	G	9.818e^-5	0.497	INTRON CG14830
3L	7247790	3L_7247790_DEL [dm3] 3L_7254690_DEL [dm6]	GATAGT	CC	9.818e^-5	0.497	INTRON CG14830
3L	7247807	3L_7247807_INS [dm3] 3L_7254707_INS [dm6]	A	AGTTTCCTACAA...	9.818e^-5	0.497	INTRON CG14830
3L	3400402	3L_3400402_SNP [dm3] 3L_3400402_SNP [dm6]	A	G	9.836e^-5	0.497	DOWNSTREAM sty INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19761106	3R_19761106_SNP [dm3] 3R_23935384_SNP [dm6]	C	G	9.930e^-5	0.501	SYNONYMOUS_CODING CG5854 DOWNSTREAM Gdh	TF binding site mE1_TFBS_sens
3R	25785688	3R_25785688_SNP [dm3] 3R_29959966_SNP [dm6]	C	T	9.960e^-5	0.501	INTRON TkR99D
3L	3781523	3L_3781523_SNP [dm3] 3L_3781523_SNP [dm6]	C	T	1.003e^-4	0.502	INTRON CG32264	TF binding site BDTNP1_TFBS_twi
3R	23420686	3R_23420686_SNP [dm3] 3R_27594964_SNP [dm6]	C	T	1.004e^-4	0.502	INTRON CG5639	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3L	7247760	3L_7247760_SNP [dm3] 3L_7254660_SNP [dm6]	G	T	1.010e^-4	0.504	INTRON CG14830
2L	5444812	2L_5444812_SNP [dm3] 2L_5444812_SNP [dm6]	T	C	1.016e^-4	0.506	INTERGENIC
2L	18279422	2L_18279422_SNP [dm3] 2L_18279422_SNP [dm6]	G	T	1.022e^-4	0.506	EXON CR44902
3R	23247496	3R_23247496_SNP [dm3] 3R_27421774_SNP [dm6]	T	C	1.023e^-4	0.506	INTRON side
2R	14964990	2R_14964990_DEL [dm3] 2R_19077485_DEL [dm6]	ATG	A	1.026e^-4	0.506	INTRON 5-HT1A	TF binding site mE1_TFBS_inv
2R	4499641	2R_4499641_SNP [dm3] 2R_8612136_SNP [dm6]	C	T	1.027e^-4	0.506	UTR_3_PRIME rgr DOWNSTREAM rgr INTRON CG8642
2L	338520	2L_338520_SNP [dm3] 2L_338520_SNP [dm6]	A	C	1.030e^-4	0.506	INTRON Plc21C
2R	18427191	2R_18427191_SNP [dm3] 2R_22539686_SNP [dm6]	T	C	1.038e^-4	0.506	INTRON px
3R	16782518	3R_16782518_SNP [dm3] 3R_20956796_SNP [dm6]	G	T	1.038e^-4	0.506	UPSTREAM Atpalpha INTRON Atpalpha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	19239456	2L_19239456_SNP [dm3] 2L_19239456_SNP [dm6]	T	C	1.039e^-4	0.506	INTERGENIC
X	9672634	X_9672634_SNP [dm3] X_9778601_SNP [dm6]	T	G	1.041e^-4	0.506	UPSTREAM CG1354 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	11814013	3R_11814013_SNP [dm3] 3R_15988291_SNP [dm6]	G	T	1.045e^-4	0.506	INTRON srp & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	20171803	3R_20171803_SNP [dm3] 3R_24346081_SNP [dm6]	G	C	1.049e^-4	0.506	UTR_3_PRIME CG5746
2R	17809646	2R_17809646_SNP [dm3] 2R_21922141_SNP [dm6]	C	T	1.049e^-4	0.506	INTRON Fili
3R	11768128	3R_11768128_SNP [dm3] 3R_15942406_SNP [dm6]	A	G	1.066e^-4	0.513	INTRON Sap47
3R	7098803	3R_7098803_SNP [dm3] 3R_11273081_SNP [dm6]	C	A	1.075e^-4	0.514	INTRON CR31386
3L	11171294	3L_11171294_SNP [dm3] 3L_11178194_SNP [dm6]	G	A	1.077e^-4	0.514	UTR_3_PRIME GlcAT-P
2L	10704163	2L_10704163_SNP [dm3] 2L_10704163_SNP [dm6]	C	A	1.077e^-4	0.514	SYNONYMOUS_CODING CG6415 INTRON Lip2
2L	9554314	2L_9554314_SNP [dm3] 2L_9554314_SNP [dm6]	G	C	1.082e^-4	0.515	INTRON jp	TF binding site mE1_TFBS_cad
2L	5444785	2L_5444785_SNP [dm3] 2L_5444785_SNP [dm6]	A	T	1.097e^-4	0.521	INTERGENIC
3R	20169597	3R_20169597_DEL [dm3] 3R_24343875_DEL [dm6]	AA	A	1.103e^-4	0.522	DOWNSTREAM CG5746 & 1 other INTERGENIC
2R	14316985	2R_14316985_SNP [dm3] 2R_18429480_SNP [dm6]	A	T	1.109e^-4	0.523	SYNONYMOUS_CODING CG12263 DOWNSTREAM CG30118	TF binding site mE1_TFBS_cad
X	9956577	X_9956577_SNP [dm3] X_10062544_SNP [dm6]	G	T	1.110e^-4	0.523	NON_SYNONYMOUS_CODING Gr9a INTRON CG15312
3L	3100926	3L_3100926_SNP [dm3] 3L_3100926_SNP [dm6]	G	C	1.124e^-4	0.527	INTRON Cht7	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA
3R	19036578	3R_19036578_SNP [dm3] 3R_23210856_SNP [dm6]	A	T	1.126e^-4	0.527	INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	5444787	2L_5444787_INS [dm3] 2L_5444787_INS [dm6]	A	AT	1.128e^-4	0.527	INTERGENIC
3L	2517933	3L_2517933_SNP [dm3] 3L_2517933_SNP [dm6]	A	G	1.132e^-4	0.528	INTRON Spn EXON CR45170
3R	1246448	3R_1246448_SNP [dm3] 3R_5420726_SNP [dm6]	A	G	1.135e^-4	0.528	INTRON CG14669
3L	7923883	3L_7923883_SNP [dm3] 3L_7930783_SNP [dm6]	T	A	1.145e^-4	0.528	INTRON syd
2L	20254114	2L_20254114_SNP [dm3] 2L_20254114_SNP [dm6]	C	T	1.145e^-4	0.528	EXON CR40465
3R	18526203	3R_18526203_SNP [dm3] 3R_22700481_SNP [dm6]	A	T	1.151e^-4	0.528	DOWNSTREAM CCAP & 1 other INTERGENIC
X	19056380	X_19056380_SNP [dm3] X_19162347_SNP [dm6]	T	G	1.152e^-4	0.528	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	3292229	2L_3292229_SNP [dm3] 2L_3292229_SNP [dm6]	C	A	1.152e^-4	0.528	NON_SYNONYMOUS_CODING CG9664 UTR_3_PRIME CG9664	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4344638	2L_4344638_SNP [dm3] 2L_4344638_SNP [dm6]	A	T	1.154e^-4	0.528	UTR_3_PRIME Atet DOWNSTREAM mir-1005
2L	10665799	2L_10665799_SNP [dm3] 2L_10665799_SNP [dm6]	C	T	1.154e^-4	0.528	INTRON CG31871
2R	10218707	2R_10218707_SNP [dm3] 2R_14331202_SNP [dm6]	G	A	1.158e^-4	0.528	INTRON Shroom
3R	21852857	3R_21852857_SNP [dm3] 3R_26027135_SNP [dm6]	T	C	1.160e^-4	0.528	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10983591	2L_10983591_SNP [dm3] 2L_10983591_SNP [dm6]	T	C	1.163e^-4	0.528	INTRON piwi
3R	12016019	3R_12016019_SNP [dm3] 3R_16190297_SNP [dm6]	C	G	1.169e^-4	0.53	INTRON sra
2R	4499626	2R_4499626_SNP [dm3] 2R_8612121_SNP [dm6]	A	T	1.179e^-4	0.532	UTR_3_PRIME rgr DOWNSTREAM rgr INTRON CG8642
3R	11741102	3R_11741102_SNP [dm3] 3R_15915380_SNP [dm6]	G	T	1.182e^-4	0.532	SYNONYMOUS_CODING CG45105	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12183870	2R_12183870_SNP [dm3] 2R_16296365_SNP [dm6]	T	C	1.184e^-4	0.532	SYNONYMOUS_CODING Atg9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15642228	3R_15642228_SNP [dm3] 3R_19816506_SNP [dm6]	C	T	1.200e^-4	0.538	INTRON bnl
X	14389565	X_14389565_SNP [dm3] X_14495532_SNP [dm6]	C	T	1.202e^-4	0.538	UPSTREAM CG12540 INTERGENIC
3L	14479836	3L_14479836_SNP [dm3] 3L_14486736_SNP [dm6]	T	C	1.206e^-4	0.538	INTRON bbg
X	14849104	X_14849104_SNP [dm3] X_14955071_SNP [dm6]	G	T	1.211e^-4	0.539	UTR_5_PRIME CG9030 UPSTREAM eag	TF binding site mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	12017886	3R_12017886_SNP [dm3] 3R_16192164_SNP [dm6]	A	T	1.212e^-4	0.539	INTRON sra
2L	3814829	2L_3814829_SNP [dm3] 2L_3814829_SNP [dm6]	G	A	1.216e^-4	0.539	UPSTREAM CR44076 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	6066693	2L_6066693_SNP [dm3] 2L_6066693_SNP [dm6]	G	A	1.223e^-4	0.541	SYNONYMOUS_CODING CG9147 UPSTREAM Fbw5 DOWNSTREAM CG9150	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10700174	2L_10700174_SNP [dm3] 2L_10700174_SNP [dm6]	T	C	1.233e^-4	0.543	SYNONYMOUS_CODING Lip1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13986702	2R_13986702_SNP [dm3] 2R_18099197_SNP [dm6]	C	T	1.234e^-4	0.543	SYNONYMOUS_CODING CG5098
2L	13355400	2L_13355400_INS [dm3] 2L_13355400_INS [dm6]	A	ACAAACGAAATA...	1.237e^-4	0.543	UPSTREAM CG9395 INTERGENIC
X	19686309	X_19686309_MNP [dm3] X_19792276_MNP [dm6]	CAC	TGA	1.240e^-4	0.543	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12321177	3L_12321177_SNP [dm3] 3L_12328077_SNP [dm6]	G	T	1.242e^-4	0.543	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7048495	2L_7048495_SNP [dm3] 2L_7048495_SNP [dm6]	T	C	1.245e^-4	0.543	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11974762	2L_11974762_SNP [dm3] 2L_11974762_SNP [dm6]	C	G	1.248e^-4	0.543	INTERGENIC
2L	1545714	2L_1545714_SNP [dm3] 2L_1545714_SNP [dm6]	A	T	1.256e^-4	0.543	INTERGENIC
3R	26551030	3R_26551030_DEL [dm3] 3R_30725308_DEL [dm6]	GTAACCATATTATTG...	G	1.257e^-4	0.543	UPSTREAM CG1340 INTERGENIC
3L	1102527	3L_1102527_DEL [dm3] 3L_1102527_DEL [dm6]	AGA	A	1.258e^-4	0.543	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	11147905	X_11147905_SNP [dm3] X_11253872_SNP [dm6]	C	T	1.259e^-4	0.543	INTRON CG44422
2R	16092376	2R_16092376_SNP [dm3] 2R_20204871_SNP [dm6]	A	T	1.265e^-4	0.544	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	3781798	3L_3781798_SNP [dm3] 3L_3781798_SNP [dm6]	A	G	1.271e^-4	0.545	INTRON CG32264	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11814012	3R_11814012_SNP [dm3] 3R_15988290_SNP [dm6]	T	A	1.275e^-4	0.545	INTRON srp & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	741428	2R_741428_SNP [dm3] 2R_4853923_SNP [dm6]	T	A	1.275e^-4	0.545	INTERGENIC
2R	17366027	2R_17366027_SNP [dm3] 2R_21478522_SNP [dm6]	G	A	1.284e^-4	0.548	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11461387	2L_11461387_SNP [dm3] 2L_11461387_SNP [dm6]	A	T	1.289e^-4	0.548	INTERGENIC
3L	3400399	3L_3400399_SNP [dm3] 3L_3400399_SNP [dm6]	T	G	1.294e^-4	0.548	DOWNSTREAM sty INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11347234	2L_11347234_SNP [dm3] 2L_11347234_SNP [dm6]	C	A	1.295e^-4	0.548	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	298640	2L_298640_SNP [dm3] 2L_298640_SNP [dm6]	C	T	1.297e^-4	0.548	INTRON Pi3K21B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1108712	3L_1108712_SNP [dm3] 3L_1108712_SNP [dm6]	T	C	1.304e^-4	0.548	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4598751	2L_4598751_SNP [dm3] 2L_4598751_SNP [dm6]	C	G	1.305e^-4	0.548	INTRON dp
X	15999613	X_15999613_SNP [dm3] X_16105580_SNP [dm6]	A	C	1.309e^-4	0.548	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	14663964	2R_14663964_SNP [dm3] 2R_18776459_SNP [dm6]	G	A	1.312e^-4	0.548	SYNONYMOUS_CODING CG15093 EXON CR43964	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	7907171	X_7907171_SNP [dm3] X_8013138_SNP [dm6]	C	T	1.312e^-4	0.548	INTRON Tbh
2L	10665713	2L_10665713_SNP [dm3] 2L_10665713_SNP [dm6]	T	C	1.314e^-4	0.548	INTRON CG31871
X	16581986	X_16581986_SNP [dm3] X_16687953_SNP [dm6]	G	A	1.323e^-4	0.55	UPSTREAM Sep4 INTRON Sep4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2R	12127723	2R_12127723_SNP [dm3] 2R_16240218_SNP [dm6]	G	A	1.326e^-4	0.55	NON_SYNONYMOUS_CODING krimp DOWNSTREAM CG15708	TF binding site mE1_TFBS_HSA
X	9055927	X_9055927_SNP [dm3] X_9161894_SNP [dm6]	T	C	1.335e^-4	0.55	SYNONYMOUS_CODING Zpr1 UPSTREAM CG44532	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	295854	2L_295854_DEL [dm3] 2L_295854_DEL [dm6]	CGGC	C	1.338e^-4	0.55	CODON_DELETION Hop	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10685195	3L_10685195_SNP [dm3] 3L_10692095_SNP [dm6]	T	G	1.342e^-4	0.55	UTR_3_PRIME CG11811 DOWNSTREAM CG33493
3R	7131130	3R_7131130_SNP [dm3] 3R_11305408_SNP [dm6]	A	T	1.346e^-4	0.55	INTRON CR31386	TF binding site BDTNP1_TFBS_twi
2R	19645949	2R_19645949_SNP [dm3] 2R_23758426_SNP [dm6]	C	T	1.349e^-4	0.55	INTRON CG9850
3L	1904606	3L_1904606_SNP [dm3] 3L_1904606_SNP [dm6]	A	T	1.349e^-4	0.55	INTRON CG1887	TF binding site mE1_TFBS_chinmo
3L	12840465	3L_12840465_SNP [dm3] 3L_12847365_SNP [dm6]	A	T	1.349e^-4	0.55	INTRON CG10948	TF binding site mE1_TFBS_kn
2L	13331642	2L_13331642_SNP [dm3] 2L_13331642_SNP [dm6]	A	G	1.350e^-4	0.55	UPSTREAM CG43778 INTERGENIC
2R	17648416	2R_17648416_SNP [dm3] 2R_21760911_SNP [dm6]	C	T	1.355e^-4	0.55	INTERGENIC
3L	3483076	3L_3483076_SNP [dm3] 3L_3483076_SNP [dm6]	A	G	1.357e^-4	0.55	DOWNSTREAM CG43074 INTRON CG42324
3R	25676741	3R_25676741_SNP [dm3] 3R_29851019_SNP [dm6]	G	A	1.359e^-4	0.55	SYNONYMOUS_CODING Cad99C	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15762325	3R_15762325_DEL [dm3] 3R_19936603_DEL [dm6]	TTCCCATAAACATATTT...	T	1.361e^-4	0.55	INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7123195	3R_7123195_SNP [dm3] 3R_11297473_SNP [dm6]	G	C	1.371e^-4	0.55	INTRON CR31386	TF binding site mE1_TFBS_chinmo
3L	8602457	3L_8602457_SNP [dm3] 3L_8609357_SNP [dm6]	T	C	1.373e^-4	0.55	INTRON CG6282
X	5812351	X_5812351_SNP [dm3] X_5918318_SNP [dm6]	A	G	1.373e^-4	0.55	INTRON CG3726	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	9834945	3R_9834945_SNP [dm3] 3R_14009223_SNP [dm6]	G	A	1.375e^-4	0.55	INTRON rdx	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10069590	2R_10069590_SNP [dm3] 2R_14182085_SNP [dm6]	C	A	1.377e^-4	0.55	UTR_3_PRIME cg
3L	15617282	3L_15617282_INS [dm3] 3L_15624182_INS [dm6]	C	CC	1.382e^-4	0.55	DOWNSTREAM CG7372 INTRON comm3	TF binding site mE1_TFBS_Trl
2R	17459287	2R_17459287_SNP [dm3] 2R_21571782_SNP [dm6]	A	G	1.383e^-4	0.55	START_GAINED CG10440 UTR_5_PRIME CG10440 UPSTREAM CG10440	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	2412956	3L_2412956_SNP [dm3] 3L_2412956_SNP [dm6]	T	C	1.385e^-4	0.55	UPSTREAM CG45186 INTRON CG45186
X	8856537	X_8856537_INS [dm3] X_8962504_INS [dm6]	A	AG	1.391e^-4	0.552	INTRON rdgA
3R	16326927	3R_16326927_SNP [dm3] 3R_20501205_SNP [dm6]	A	G	1.397e^-4	0.552	SYNONYMOUS_CODING Dic2
3L	911357	3L_911357_SNP [dm3] 3L_911357_SNP [dm6]	A	G	1.398e^-4	0.552	UTR_3_PRIME nerfin-1	regulatory region REDfly_CRMs
3R	27475154	3R_27475154_DEL [dm3] 3R_31649432_DEL [dm6]	GGATAT	A	1.405e^-4	0.552	INTRON kek6
3L	1103327	3L_1103327_SNP [dm3] 3L_1103327_SNP [dm6]	G	T	1.405e^-4	0.552	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	3374771	X_3374771_SNP [dm3] X_3480738_SNP [dm6]	T	A	1.407e^-4	0.552	INTRON CR44999 & 1 other
2L	10706020	2L_10706020_SNP [dm3] 2L_10706020_SNP [dm6]	T	C	1.411e^-4	0.553	INTRON Lip2
2R	10514041	2R_10514041_INS [dm3] 2R_14626536_INS [dm6]	G	GTA	1.414e^-4	0.553	INTERGENIC
3R	11288878	3R_11288878_SNP [dm3] 3R_15463156_SNP [dm6]	T	C	1.424e^-4	0.555	START_GAINED AdamTS-A UTR_5_PRIME AdamTS-A INTRON AdamTS-A
3L	11095360	3L_11095360_SNP [dm3] 3L_11102260_SNP [dm6]	G	T	1.434e^-4	0.555	SYNONYMOUS_CODING Elo68alpha UPSTREAM Elo68beta
X	19686306	X_19686306_INS [dm3] X_19792273_INS [dm6]	T	TCAATATTCAATCATCAATT...	1.439e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15421776	2R_15421776_SNP [dm3] 2R_19534271_SNP [dm6]	A	T	1.440e^-4	0.555	INTRON sm
X	4199122	X_4199122_INS [dm3] X_4305089_INS [dm6]	A	AA	1.444e^-4	0.555	INTERGENIC
3R	7022475	3R_7022475_SNP [dm3] 3R_11196753_SNP [dm6]	G	A	1.444e^-4	0.555	SYNONYMOUS_CODING CG18577 UPSTREAM cu
3R	23420707	3R_23420707_SNP [dm3] 3R_27594985_SNP [dm6]	C	G	1.447e^-4	0.555	INTRON CG5639	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3R	25307517	3R_25307517_SNP [dm3] 3R_29481795_SNP [dm6]	T	A	1.453e^-4	0.555	INTRON Ptp99A	TF binding site mE1_TFBS_cad
2L	402178	2L_402178_SNP [dm3] 2L_402178_SNP [dm6]	A	G	1.458e^-4	0.555	UTR_5_PRIME CG4213 UPSTREAM CG4213	TF binding site mE1_TFBS_Trl
2R	16092375	2R_16092375_SNP [dm3] 2R_20204870_SNP [dm6]	G	T	1.459e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	5864802	2L_5864802_SNP [dm3] 2L_5864802_SNP [dm6]	A	G	1.460e^-4	0.555	INTRON rau	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10552269	2L_10552269_SNP [dm3] 2L_10552269_SNP [dm6]	A	G	1.460e^-4	0.555	INTRON Trim9	TF binding site mE1_TFBS_cad
2L	20225662	2L_20225662_SNP [dm3] 2L_20225662_SNP [dm6]	G	C	1.464e^-4	0.555	INTERGENIC
3R	10962162	3R_10962162_SNP [dm3] 3R_15136440_SNP [dm6]	A	T	1.466e^-4	0.555	UPSTREAM CG3984 DOWNSTREAM CR45600 INTRON CG6912	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	10012341	3R_10012341_SNP [dm3] 3R_14186619_SNP [dm6]	G	T	1.475e^-4	0.555	INTRON Dop1R1
3R	9830656	3R_9830656_SNP [dm3] 3R_14004934_SNP [dm6]	G	A	1.477e^-4	0.555	INTRON rdx
2R	12851800	2R_12851800_SNP [dm3] 2R_16964295_SNP [dm6]	G	T	1.481e^-4	0.555	EXON CR44376
2R	17103791	2R_17103791_SNP [dm3] 2R_21216286_SNP [dm6]	G	A	1.486e^-4	0.555	SYNONYMOUS_CODING CG15661	TF binding site mE1_TFBS_cad
2R	17103793	2R_17103793_SNP [dm3] 2R_21216288_SNP [dm6]	G	A	1.486e^-4	0.555	NON_SYNONYMOUS_CODING CG15661	TF binding site mE1_TFBS_cad
2R	13886852	2R_13886852_SNP [dm3] 2R_17999347_SNP [dm6]	A	T	1.486e^-4	0.555	INTRON dpr13
3R	12017772	3R_12017772_SNP [dm3] 3R_16192050_SNP [dm6]	A	C	1.489e^-4	0.555	INTRON sra
3L	9771813	3L_9771813_SNP [dm3] 3L_9778713_SNP [dm6]	A	G	1.490e^-4	0.555	INTRON CG8177
2R	15686491	2R_15686491_SNP [dm3] 2R_19798986_SNP [dm6]	A	T	1.494e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7247841	3L_7247841_SNP [dm3] 3L_7254741_SNP [dm6]	T	A	1.495e^-4	0.555	INTRON CG14830
3R	23325639	3R_23325639_SNP [dm3] 3R_27499917_SNP [dm6]	T	G	1.503e^-4	0.555	INTERGENIC
2L	10702506	2L_10702506_SNP [dm3] 2L_10702506_SNP [dm6]	G	A	1.507e^-4	0.555	SYNONYMOUS_CODING Lip2 UPSTREAM Lip1
2R	14408808	2R_14408808_SNP [dm3] 2R_18521303_SNP [dm6]	A	G	1.508e^-4	0.555	SPLICE_SITE_REGION CG43066 INTRON CG43066	TF binding site mE1_TFBS_chinmo
2R	15040863	2R_15040863_SNP [dm3] 2R_19153358_SNP [dm6]	T	C	1.508e^-4	0.555	INTRON ena	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23420650	3R_23420650_SNP [dm3] 3R_27594928_SNP [dm6]	G	A	1.518e^-4	0.555	INTRON CG5639	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3L	5660869	3L_5660869_SNP [dm3] 3L_5667769_SNP [dm6]	T	A	1.519e^-4	0.555	INTRON sif
3L	8415706	3L_8415706_SNP [dm3] 3L_8422606_SNP [dm6]	T	C	1.520e^-4	0.555	UPSTREAM CG32354 INTERGENIC
2R	13471510	2R_13471510_SNP [dm3] 2R_17584005_SNP [dm6]	G	A	1.521e^-4	0.555	START_GAINED CG6484 UTR_5_PRIME CG6484 UPSTREAM CR45274
2R	9150952	2R_9150952_SNP [dm3] 2R_13263447_SNP [dm6]	T	C	1.521e^-4	0.555	INTRON CG42319
3L	16041221	3L_16041221_SNP [dm3] 3L_16048121_SNP [dm6]	A	T	1.524e^-4	0.555	INTRON th	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10963594	X_10963594_SNP [dm3] X_11069561_SNP [dm6]	G	A	1.525e^-4	0.555	INTERGENIC
2L	3294124	2L_3294124_SNP [dm3] 2L_3294124_SNP [dm6]	G	T	1.529e^-4	0.556	UTR_5_PRIME CG9664 DOWNSTREAM CG9663 INTRON CG9664	TF binding site mE1_TFBS_HSA
3L	11909095	3L_11909095_DEL [dm3] 3L_11915995_DEL [dm6]	GT	G	1.531e^-4	0.556	INTRON CG44837
2R	9796635	2R_9796635_SNP [dm3] 2R_13909130_SNP [dm6]	G	A	1.539e^-4	0.557	INTRON shot
2L	2860775	2L_2860775_SNP [dm3] 2L_2860775_SNP [dm6]	T	G	1.541e^-4	0.557	INTRON CG2991	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens
2L	9290864	2L_9290864_SNP [dm3] 2L_9290864_SNP [dm6]	G	A	1.548e^-4	0.558	INTRON Ggamma30A
2L	10307135	2L_10307135_SNP [dm3] 2L_10307135_SNP [dm6]	C	T	1.549e^-4	0.558	UPSTREAM CG5390 DOWNSTREAM Cdk5alpha INTRON CG4968	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	5444821	2L_5444821_SNP [dm3] 2L_5444821_SNP [dm6]	T	G	1.563e^-4	0.559	INTERGENIC
2L	22121690	2L_22121690_SNP [dm3] 2L_22121690_SNP [dm6]	G	A	1.566e^-4	0.559	UPSTREAM CG3651 INTRON CG3651	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4596793	2L_4596793_SNP [dm3] 2L_4596793_SNP [dm6]	C	G	1.574e^-4	0.559	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_Kr
3L	7266054	3L_7266054_SNP [dm3] 3L_7272954_SNP [dm6]	T	G	1.574e^-4	0.559	SYNONYMOUS_CODING unc-13-4A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1435469	2L_1435469_SNP [dm3] 2L_1435469_SNP [dm6]	T	C	1.581e^-4	0.559	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4576054	3L_4576054_SNP [dm3] 3L_4576054_SNP [dm6]	G	T	1.584e^-4	0.559	INTRON CG42540
X	12126298	X_12126298_INS [dm3] X_12232265_INS [dm6]	G	GCATAATGCCTGCATTCG...	1.586e^-4	0.559	INTRON Ten-a
3L	5275855	3L_5275855_SNP [dm3] 3L_5282755_SNP [dm6]	T	A	1.587e^-4	0.559	INTERGENIC
3L	5793833	3L_5793833_SNP [dm3] 3L_5800733_SNP [dm6]	A	C	1.591e^-4	0.559	INTRON S6k	TF binding site mE1_TFBS_cad
2L	4361162	2L_4361162_SNP [dm3] 2L_4361162_SNP [dm6]	A	C	1.591e^-4	0.559	UPSTREAM Traf4 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	3081516	2L_3081516_INS [dm3] 2L_3081516_INS [dm6]	C	CAC	1.594e^-4	0.559	INTRON toc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	19653100	3L_19653100_SNP [dm3] 3L_19660000_SNP [dm6]	G	T	1.595e^-4	0.559	INTRON tey
3L	19953653	3L_19953653_SNP [dm3] 3L_19960553_SNP [dm6]	C	T	1.603e^-4	0.559	INTRON Ac76E
3L	3510639	3L_3510639_SNP [dm3] 3L_3510639_SNP [dm6]	C	A	1.606e^-4	0.559	UTR_3_PRIME CG42324 DOWNSTREAM ImpE2
3R	26639349	3R_26639349_SNP [dm3] 3R_30813627_SNP [dm6]	C	T	1.611e^-4	0.559	INTRON cindr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10703723	2L_10703723_SNP [dm3] 2L_10703723_SNP [dm6]	C	T	1.613e^-4	0.559	SYNONYMOUS_CODING CG6415 INTRON Lip2	TF binding site BDTNP1_TFBS_dl
3R	25357577	3R_25357577_SNP [dm3] 3R_29531855_SNP [dm6]	A	G	1.615e^-4	0.559	INTERGENIC	TF binding site mE1_TFBS_sens
3R	27146149	3R_27146149_SNP [dm3] 3R_31320427_SNP [dm6]	A	T	1.620e^-4	0.559	INTRON CG34347
2L	3294129	2L_3294129_SNP [dm3] 2L_3294129_SNP [dm6]	C	G	1.626e^-4	0.559	UTR_5_PRIME CG9664 DOWNSTREAM CG9663 INTRON CG9664	TF binding site mE1_TFBS_HSA
2R	12666080	2R_12666080_DEL [dm3] 2R_16778575_DEL [dm6]	ATAA	A	1.629e^-4	0.559	INTRON Vkor	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5444865	2L_5444865_SNP [dm3] 2L_5444865_SNP [dm6]	G	A	1.629e^-4	0.559	INTERGENIC
2L	5444874	2L_5444874_INS [dm3] 2L_5444874_INS [dm6]	T	TTGAAAACA	1.629e^-4	0.559	INTERGENIC
3L	10793349	3L_10793349_SNP [dm3] 3L_10800249_SNP [dm6]	C	A	1.632e^-4	0.559	UPSTREAM CG12523 INTERGENIC
2L	6588178	2L_6588178_SNP [dm3] 2L_6588178_SNP [dm6]	A	T	1.633e^-4	0.559	INTRON CG11319
2L	6182566	2L_6182566_DEL [dm3] 2L_6182566_DEL [dm6]	GA	T	1.634e^-4	0.559	INTRON CG34380	TF binding site mE1_TFBS_sens
2L	4636345	2L_4636345_SNP [dm3] 2L_4636345_SNP [dm6]	G	T	1.635e^-4	0.559	INTERGENIC
3L	4589668	3L_4589668_SNP [dm3] 3L_4589668_SNP [dm6]	T	G	1.639e^-4	0.559	INTRON CG42540
3L	14901512	3L_14901512_SNP [dm3] 3L_14908412_SNP [dm6]	T	C	1.640e^-4	0.559	INTRON DCX-EMAP	TF binding site BDTNP1_TFBS_twi
2R	10513445	2R_10513445_SNP [dm3] 2R_14625940_SNP [dm6]	G	T	1.642e^-4	0.559	INTERGENIC
2L	21863889	2L_21863889_SNP [dm3] 2L_21863889_SNP [dm6]	A	G	1.643e^-4	0.559	INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	911066	3L_911066_SNP [dm3] 3L_911066_SNP [dm6]	A	G	1.654e^-4	0.56	UTR_3_PRIME nerfin-1	regulatory region REDfly_CRMs
2L	10705994	2L_10705994_SNP [dm3] 2L_10705994_SNP [dm6]	C	T	1.655e^-4	0.56	INTRON Lip2
3R	12017860	3R_12017860_SNP [dm3] 3R_16192138_SNP [dm6]	C	G	1.657e^-4	0.56	INTRON sra
3L	1354290	3L_1354290_SNP [dm3] 3L_1354290_SNP [dm6]	C	G	1.657e^-4	0.56	INTRON Ptp61F
2L	333667	2L_333667_SNP [dm3] 2L_333667_SNP [dm6]	A	T	1.662e^-4	0.561	INTRON Plc21C	TF binding site mE1_TFBS_cad
X	9502364	X_9502364_SNP [dm3] X_9608331_SNP [dm6]	A	C	1.683e^-4	0.565	UPSTREAM CG42797 INTRON Aats-lys	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26374536	3R_26374536_SNP [dm3] 3R_30548814_SNP [dm6]	C	T	1.684e^-4	0.565	INTRON tmod
2L	9710184	2L_9710184_SNP [dm3] 2L_9710184_SNP [dm6]	C	T	1.687e^-4	0.565	SYNONYMOUS_CODING CG4364	TF binding site BDTNP1_TFBS_sna mE1_TFBS_sens
2L	4272891	2L_4272891_SNP [dm3] 2L_4272891_SNP [dm6]	C	T	1.691e^-4	0.565	INTERGENIC
3L	3786960	3L_3786960_SNP [dm3] 3L_3786960_SNP [dm6]	T	C	1.693e^-4	0.565	INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	9502347	X_9502347_DEL [dm3] X_9608314_DEL [dm6]	TA	T	1.694e^-4	0.565	UPSTREAM CG42797 INTRON Aats-lys	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6561605	3L_6561605_SNP [dm3] 3L_6568505_SNP [dm6]	C	G	1.698e^-4	0.565	SYNONYMOUS_CODING jv INTRON CG18769
2L	16370769	2L_16370769_SNP [dm3] 2L_16370769_SNP [dm6]	A	T	1.702e^-4	0.565	INTERGENIC
2R	10218704	2R_10218704_SNP [dm3] 2R_14331199_SNP [dm6]	C	T	1.703e^-4	0.565	INTRON Shroom
2R	7699621	2R_7699621_SNP [dm3] 2R_11812116_SNP [dm6]	T	C	1.712e^-4	0.566	UTR_3_PRIME ths DOWNSTREAM ths	TF binding site BDTNP1_TFBS_twi
3R	25786086	3R_25786086_INS [dm3] 3R_29960364_INS [dm6]	A	ATGTCCTACGA...	1.715e^-4	0.566	INTRON TkR99D
3R	20335715	3R_20335715_DEL [dm3] 3R_24509993_DEL [dm6]	AA	A	1.718e^-4	0.566	INTRON nAChRbeta2
2L	6066657	2L_6066657_SNP [dm3] 2L_6066657_SNP [dm6]	C	T	1.722e^-4	0.566	SYNONYMOUS_CODING CG9147 UPSTREAM Fbw5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5528580	2L_5528580_SNP [dm3] 2L_5528580_SNP [dm6]	C	T	1.724e^-4	0.566	SYNONYMOUS_CODING CG31915 DOWNSTREAM CG31648 INTRON Cap-D3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	11526320	X_11526320_SNP [dm3] X_11632287_SNP [dm6]	T	C	1.725e^-4	0.566	INTRON Ptp10D	TF binding site BDTNP1_TFBS_twi
2L	11895225	2L_11895225_SNP [dm3] 2L_11895225_SNP [dm6]	T	A	1.736e^-4	0.566	INTRON Pde1c
2R	17807479	2R_17807479_SNP [dm3] 2R_21919974_SNP [dm6]	T	C	1.740e^-4	0.566	INTRON Fili
2R	12638177	2R_12638177_SNP [dm3] 2R_16750672_SNP [dm6]	T	C	1.740e^-4	0.566	UPSTREAM Acp53Ea DOWNSTREAM Acp53C14c & 1 other INTERGENIC
X	9778229	X_9778229_SNP [dm3] X_9884196_SNP [dm6]	G	T	1.749e^-4	0.566	UPSTREAM CG9691 DOWNSTREAM CG9689 INTERGENIC
2L	1694203	2L_1694203_INS [dm3] 2L_1694203_INS [dm6]	G	GTG	1.749e^-4	0.566	INTRON chinmo
3R	23460457	3R_23460457_SNP [dm3] 3R_27634735_SNP [dm6]	T	C	1.752e^-4	0.566	UTR_3_PRIME Tusp & 1 other DOWNSTREAM CG5611	TF binding site mE1_TFBS_HSA
2L	1965012	2L_1965012_INS [dm3] 2L_1965012_INS [dm6]	A	ATTCGGT	1.753e^-4	0.566	UPSTREAM tRNA:CR31942 INTRON erm	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19953650	3L_19953650_SNP [dm3] 3L_19960550_SNP [dm6]	G	A	1.763e^-4	0.566	INTRON Ac76E
3L	8437666	3L_8437666_DEL [dm3] 3L_8444566_DEL [dm6]	AA	G	1.763e^-4	0.566	INTRON CG6983	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17354333	2L_17354333_SNP [dm3] 2L_17354333_SNP [dm6]	C	G	1.765e^-4	0.566	UPSTREAM CR44345 EXON CR43239
X	8928395	X_8928395_SNP [dm3] X_9034362_SNP [dm6]	A	C	1.767e^-4	0.566	INTRON CR43836 & 1 other
2L	3291013	2L_3291013_SNP [dm3] 2L_3291013_SNP [dm6]	G	T	1.774e^-4	0.566	DOWNSTREAM CG9664 INTERGENIC	TF binding site mE1_TFBS_bab1
2L	10703589	2L_10703589_SNP [dm3] 2L_10703589_SNP [dm6]	T	G	1.774e^-4	0.566	UPSTREAM CG6415 INTRON Lip2	TF binding site BDTNP1_TFBS_dl
3R	25794183	3R_25794183_SNP [dm3] 3R_29968461_SNP [dm6]	G	C	1.778e^-4	0.566	INTRON TkR99D
2L	19228174	2L_19228174_SNP [dm3] 2L_19228174_SNP [dm6]	A	G	1.779e^-4	0.566	INTERGENIC
X	9672343	X_9672343_SNP [dm3] X_9778310_SNP [dm6]	G	C	1.781e^-4	0.566	UPSTREAM CG1354 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2R	16230010	2R_16230010_SNP [dm3] 2R_20342505_SNP [dm6]	T	C	1.781e^-4	0.566	INTRON CG16739
2R	677427	2R_677427_SNP [dm3] 2R_4789922_SNP [dm6]	G	T	1.781e^-4	0.566	UPSTREAM CG12547 INTERGENIC	transposable element FlyBase
2L	9155257	2L_9155257_SNP [dm3] 2L_9155257_SNP [dm6]	T	A	1.793e^-4	0.566	INTRON CG32982
3L	11095932	3L_11095932_SNP [dm3] 3L_11102832_SNP [dm6]	G	A	1.799e^-4	0.566	DOWNSTREAM CG32071 INTRON Elo68alpha	TF binding site mE1_TFBS_chinmo
3R	7024489	3R_7024489_SNP [dm3] 3R_11198767_SNP [dm6]	T	C	1.802e^-4	0.566	INTRON cu	TF binding site mE1_TFBS_Trl
2L	5444895	2L_5444895_SNP [dm3] 2L_5444895_SNP [dm6]	T	A	1.806e^-4	0.566	INTERGENIC
2R	9148530	2R_9148530_SNP [dm3] 2R_13261025_SNP [dm6]	C	T	1.809e^-4	0.566	INTRON CG42319
3L	9089670	3L_9089670_SNP [dm3] 3L_9096570_SNP [dm6]	A	G	1.811e^-4	0.566	UPSTREAM CG13315 INTERGENIC
3R	11609103	3R_11609103_SNP [dm3] 3R_15783381_SNP [dm6]	A	T	1.812e^-4	0.566	INTERGENIC
3L	19953652	3L_19953652_SNP [dm3] 3L_19960552_SNP [dm6]	C	T	1.814e^-4	0.566	INTRON Ac76E
3L	10634646	3L_10634646_SNP [dm3] 3L_10641546_SNP [dm6]	C	T	1.817e^-4	0.566	SYNONYMOUS_CODING CG32066 UPSTREAM CG14154
3R	25791627	3R_25791627_SNP [dm3] 3R_29965905_SNP [dm6]	G	A	1.822e^-4	0.566	INTRON TkR99D
2L	22941820	2L_22941820_INS [dm3] 2L_23049088_INS [dm6]	A	ACCTA	1.828e^-4	0.566	INTERGENIC
3R	18554843	3R_18554843_SNP [dm3] 3R_22729121_SNP [dm6]	C	T	1.829e^-4	0.566	UTR_5_PRIME CG45049 INTRON CG45049
2R	738775	2R_738775_DEL [dm3] 2R_4851270_DEL [dm6]	AT	A	1.830e^-4	0.566	INTERGENIC	transposable element FlyBase
3R	25267421	3R_25267421_DEL [dm3] 3R_29441699_DEL [dm6]	ATACATTC	A	1.831e^-4	0.566	INTRON Ptp99A	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8774139	3L_8774139_SNP [dm3] 3L_8781039_SNP [dm6]	T	C	1.834e^-4	0.566	INTRON Fhos
3R	25791628	3R_25791628_SNP [dm3] 3R_29965906_SNP [dm6]	T	A	1.836e^-4	0.566	INTRON TkR99D
2R	1929987	2R_1929987_INS [dm3] 2R_6042482_INS [dm6]	A	ATA	1.839e^-4	0.566	UPSTREAM Tbce INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	15762274	3R_15762274_SNP [dm3] 3R_19936552_SNP [dm6]	G	T	1.841e^-4	0.566	INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12979520	2L_12979520_SNP [dm3] 2L_12979520_SNP [dm6]	G	A	1.849e^-4	0.566	SYNONYMOUS_CODING Vha68-3 DOWNSTREAM Vha68-2
3L	11909208	3L_11909208_SNP [dm3] 3L_11916108_SNP [dm6]	A	G	1.849e^-4	0.566	INTRON CG44837
3L	16312986	3L_16312986_SNP [dm3] 3L_16319886_SNP [dm6]	C	A	1.852e^-4	0.566	UTR_5_PRIME CG13060 UPSTREAM CG13041 DOWNSTREAM CR45663 & 1 other EXON CR45664
3R	19063365	3R_19063365_SNP [dm3] 3R_23237643_SNP [dm6]	T	A	1.855e^-4	0.566	INTRON CG4467
3L	10846071	3L_10846071_SNP [dm3] 3L_10852971_SNP [dm6]	T	A	1.863e^-4	0.566	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3405441	3L_3405441_DEL [dm3] 3L_3405441_DEL [dm6]	CTTTTAGAGG	A	1.864e^-4	0.566	INTRON sty
3L	14479941	3L_14479941_SNP [dm3] 3L_14486841_SNP [dm6]	G	A	1.864e^-4	0.566	INTRON bbg
3R	11582493	3R_11582493_SNP [dm3] 3R_15756771_SNP [dm6]	C	T	1.865e^-4	0.566	INTERGENIC
2L	14298346	2L_14298346_SNP [dm3] 2L_14298346_SNP [dm6]	T	C	1.867e^-4	0.566	INTRON wb
3R	10978177	3R_10978177_SNP [dm3] 3R_15152455_SNP [dm6]	C	T	1.867e^-4	0.566	INTRON Gyc88E	TF binding site mE1_TFBS_kn
3R	964586	3R_964586_SNP [dm3] 3R_5138864_SNP [dm6]	A	G	1.872e^-4	0.566	UTR_5_PRIME CG12589
2L	13331660	2L_13331660_SNP [dm3] 2L_13331660_SNP [dm6]	A	G	1.873e^-4	0.566	UPSTREAM CG43778 INTERGENIC
2L	10715799	2L_10715799_SNP [dm3] 2L_10715799_SNP [dm6]	G	A	1.873e^-4	0.566	INTERGENIC
2L	13909986	2L_13909986_SNP [dm3] 2L_13909986_SNP [dm6]	C	A	1.874e^-4	0.566	SYNONYMOUS_CODING Ance-2 DOWNSTREAM Ance	TF binding site mE1_TFBS_cad
2L	3730112	2L_3730112_SNP [dm3] 2L_3730112_SNP [dm6]	G	T	1.882e^-4	0.566	UPSTREAM CG10019 DOWNSTREAM Shaw INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14608697	2R_14608697_SNP [dm3] 2R_18721192_SNP [dm6]	C	A	1.882e^-4	0.566	DOWNSTREAM mir-4982 INTRON Hs3st-A
X	22140405	X_22140405_SNP [dm3] X_22738569_SNP [dm6]	T	A	1.887e^-4	0.566	INTRON CR44997
2R	5856654	2R_5856654_DEL [dm3] 2R_9969149_DEL [dm6]	GG	G	1.890e^-4	0.566	UTR_5_PRIME Adam DOWNSTREAM CG12133	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18792361	X_18792361_SNP [dm3] X_18898328_SNP [dm6]	A	G	1.894e^-4	0.566	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	15046681	2R_15046681_SNP [dm3] 2R_19159176_SNP [dm6]	C	G	1.900e^-4	0.566	SYNONYMOUS_CODING ena
X	17303938	X_17303938_SNP [dm3] X_17409905_SNP [dm6]	T	C	1.902e^-4	0.566	INTERGENIC	TF binding site mE1_TFBS_inv
3L	14733790	3L_14733790_SNP [dm3] 3L_14740690_SNP [dm6]	C	T	1.902e^-4	0.566	INTRON ome
X	10320685	X_10320685_SNP [dm3] X_10426652_SNP [dm6]	T	G	1.907e^-4	0.566	INTRON CG32683
2L	6067295	2L_6067295_SNP [dm3] 2L_6067295_SNP [dm6]	A	T	1.908e^-4	0.566	SYNONYMOUS_CODING CG9147 DOWNSTREAM CG9150	TF binding site mE1_TFBS_inv
X	17162369	X_17162369_SNP [dm3] X_17268336_SNP [dm6]	A	G	1.911e^-4	0.566	UTR_5_PRIME f INTRON f
3R	14215076	3R_14215076_SNP [dm3] 3R_18389354_SNP [dm6]	A	G	1.912e^-4	0.566	SYNONYMOUS_CODING Vha100-4 DOWNSTREAM Vha100-2	TF binding site mE1_TFBS_cad
2R	7713220	2R_7713220_DEL [dm3] 2R_11825715_DEL [dm6]	TATAC	T	1.916e^-4	0.567	INTRON CG13192	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	18787138	2R_18787138_SNP [dm3] 2R_22899615_SNP [dm6]	C	A	1.934e^-4	0.569	INTRON nahoda
2L	9463848	2L_9463848_SNP [dm3] 2L_9463848_SNP [dm6]	T	A	1.936e^-4	0.569	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_kn
2R	16576601	2R_16576601_INS [dm3] 2R_20689096_INS [dm6]	C	AT	1.939e^-4	0.569	INTERGENIC
2R	19117744	2R_19117744_SNP [dm3] 2R_23230221_SNP [dm6]	A	G	1.942e^-4	0.569	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	14298973	3L_14298973_INS [dm3] 3L_14305873_INS [dm6]	T	TTACAGGT	1.943e^-4	0.569	INTRON fz
X	13968506	X_13968506_SNP [dm3] X_14074473_SNP [dm6]	G	C	1.949e^-4	0.569	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14612464	2R_14612464_SNP [dm3] 2R_18724959_SNP [dm6]	G	C	1.951e^-4	0.569	INTRON Hs3st-A
3R	11975243	3R_11975243_SNP [dm3] 3R_16149521_SNP [dm6]	G	A	1.955e^-4	0.569	UTR_3_PRIME CG5916 & 1 other DOWNSTREAM CG5916
2L	14981608	2L_14981608_SNP [dm3] 2L_14981608_SNP [dm6]	G	A	1.960e^-4	0.569	INTRON mol
X	11351223	X_11351223_SNP [dm3] X_11457190_SNP [dm6]	G	C	1.964e^-4	0.569	NON_SYNONYMOUS_CODING HP5 DOWNSTREAM HP5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	12146058	2L_12146058_SNP [dm3] 2L_12146058_SNP [dm6]	A	C	1.965e^-4	0.569	INTRON CG31760
3L	10244228	3L_10244228_SNP [dm3] 3L_10251128_SNP [dm6]	C	A	1.969e^-4	0.569	INTERGENIC
2R	6448360	2R_6448360_SNP [dm3] 2R_10560855_SNP [dm6]	G	A	1.970e^-4	0.569	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	24862752	3R_24862752_SNP [dm3] 3R_29037030_SNP [dm6]	A	T	1.971e^-4	0.569	UTR_3_PRIME Cpsf100 DOWNSTREAM Slu7	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9856798	2L_9856798_SNP [dm3] 2L_9856798_SNP [dm6]	A	G	1.973e^-4	0.569	INTRON nAChRalpha6
3L	1105351	3L_1105351_SNP [dm3] 3L_1105351_SNP [dm6]	T	C	1.973e^-4	0.569	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13455951	3R_13455951_SNP [dm3] 3R_17630229_SNP [dm6]	C	T	1.980e^-4	0.569	UPSTREAM CG43175 DOWNSTREAM tRNA:CR31569 INTERGENIC
3R	26649484	3R_26649484_SNP [dm3] 3R_30823762_SNP [dm6]	C	T	1.986e^-4	0.569	INTRON cindr
2R	11866839	2R_11866839_SNP [dm3] 2R_15979334_SNP [dm6]	A	G	1.987e^-4	0.569	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_sens
X	5613557	X_5613557_SNP [dm3] X_5719524_SNP [dm6]	C	T	1.988e^-4	0.569	UTR_3_PRIME CG32758 DOWNSTREAM CG32758
2L	1944484	2L_1944484_SNP [dm3] 2L_1944484_SNP [dm6]	G	T	1.993e^-4	0.569	DOWNSTREAM CG7337 & 1 other INTERGENIC
2R	13717516	2R_13717516_INS [dm3] 2R_17830011_INS [dm6]	A	AA	1.995e^-4	0.569	INTRON grh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd
2L	11767403	2L_11767403_SNP [dm3] 2L_11767403_SNP [dm6]	G	A	1.997e^-4	0.569	INTERGENIC
2L	3339600	2L_3339600_SNP [dm3] 2L_3339600_SNP [dm6]	C	A	1.998e^-4	0.569	INTRON E23	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8274491	3L_8274491_SNP [dm3] 3L_8281391_SNP [dm6]	A	T	2.001e^-4	0.569	UTR_3_PRIME Dscam4 DOWNSTREAM Dscam4
3R	26843622	3R_26843622_SNP [dm3] 3R_31017900_SNP [dm6]	T	C	2.008e^-4	0.571	INTERGENIC
3R	13988254	3R_13988254_SNP [dm3] 3R_18162532_SNP [dm6]	A	G	2.011e^-4	0.571	SYNONYMOUS_CODING CG7218	TF binding site mE1_TFBS_HSA
3L	10244290	3L_10244290_SNP [dm3] 3L_10251190_SNP [dm6]	A	G	2.019e^-4	0.572	INTERGENIC
3R	21852962	3R_21852962_SNP [dm3] 3R_26027240_SNP [dm6]	G	A	2.023e^-4	0.572	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25856298	3R_25856298_SNP [dm3] 3R_30030576_SNP [dm6]	C	A	2.037e^-4	0.573	INTRON Axn	TF binding site BDTNP1_TFBS_dl
2L	5444852	2L_5444852_SNP [dm3] 2L_5444852_SNP [dm6]	C	A	2.039e^-4	0.573	INTERGENIC
X	12329544	X_12329544_SNP [dm3] X_12435511_SNP [dm6]	C	T	2.042e^-4	0.573	INTRON Pkcdelta
3R	15761887	3R_15761887_SNP [dm3] 3R_19936165_SNP [dm6]	T	G	2.044e^-4	0.573	INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4398541	2R_4398541_SNP [dm3] 2R_8511036_SNP [dm6]	G	T	2.044e^-4	0.573	INTRON mtt
2L	10703661	2L_10703661_SNP [dm3] 2L_10703661_SNP [dm6]	G	A	2.047e^-4	0.573	NON_SYNONYMOUS_CODING CG6415 INTRON Lip2	TF binding site BDTNP1_TFBS_dl
3R	18788972	3R_18788972_SNP [dm3] 3R_22963250_SNP [dm6]	C	T	2.048e^-4	0.573	DOWNSTREAM CR43655 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9899590	3L_9899590_SNP [dm3] 3L_9906490_SNP [dm6]	A	T	2.055e^-4	0.573	INTERGENIC
2L	18329994	2L_18329994_SNP [dm3] 2L_18329994_SNP [dm6]	G	A	2.061e^-4	0.573	INTRON Fas3
2R	18390745	2R_18390745_DEL [dm3] 2R_22503240_DEL [dm6]	CC	C	2.063e^-4	0.573	INTRON px
2R	17835646	2R_17835646_SNP [dm3] 2R_21948141_SNP [dm6]	C	A	2.065e^-4	0.573	INTERGENIC
3L	5519488	3L_5519488_SNP [dm3] 3L_5526388_SNP [dm6]	G	T	2.069e^-4	0.573	INTRON Lkr
3R	13456128	3R_13456128_SNP [dm3] 3R_17630406_SNP [dm6]	C	G	2.070e^-4	0.573	UPSTREAM CG43175 DOWNSTREAM tRNA:CR31569 INTERGENIC
3L	14481844	3L_14481844_SNP [dm3] 3L_14488744_SNP [dm6]	A	T	2.075e^-4	0.573	INTRON bbg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	1944478	2L_1944478_SNP [dm3] 2L_1944478_SNP [dm6]	C	T	2.078e^-4	0.573	DOWNSTREAM CG7337 & 1 other INTERGENIC
3L	9813421	3L_9813421_SNP [dm3] 3L_9820321_SNP [dm6]	T	C	2.081e^-4	0.573	UTR_5_PRIME CG43897
2L	6181669	2L_6181669_SNP [dm3] 2L_6181669_SNP [dm6]	A	G	2.086e^-4	0.573	INTRON CG34380
X	15662077	X_15662077_INS [dm3] X_15768044_INS [dm6]	T	TTT	2.091e^-4	0.573	INTRON CG17209	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	6640052	X_6640052_SNP [dm3] X_6746019_SNP [dm6]	G	A	2.097e^-4	0.573	DOWNSTREAM CR44964 EXON CR44895
3R	11028843	3R_11028843_SNP [dm3] 3R_15203121_SNP [dm6]	C	T	2.100e^-4	0.573	UTR_3_PRIME Spn88Ea DOWNSTREAM CG42542	TF binding site mE1_TFBS_cad
3L	14352552	3L_14352552_DEL [dm3] 3L_14359452_DEL [dm6]	CAAATATCTATC...	C	2.105e^-4	0.573	INTRON fz
2R	7595271	2R_7595271_SNP [dm3] 2R_11707766_SNP [dm6]	A	T	2.111e^-4	0.573	INTERGENIC
3R	16326406	3R_16326406_SNP [dm3] 3R_20500684_SNP [dm6]	A	T	2.115e^-4	0.573	INTRON Dic2
2R	11708754	2R_11708754_SNP [dm3] 2R_15821249_SNP [dm6]	A	T	2.118e^-4	0.573	UPSTREAM CG33465 INTRON tun	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	10513683	2R_10513683_DEL [dm3] 2R_14626178_DEL [dm6]	TATAAATTTCC...	T	2.123e^-4	0.573	INTERGENIC
3R	19676546	3R_19676546_SNP [dm3] 3R_23850824_SNP [dm6]	A	G	2.124e^-4	0.573	UTR_3_PRIME CG34355
2R	1980120	2R_1980120_SNP [dm3] 2R_6092615_SNP [dm6]	A	G	2.126e^-4	0.573	SYNONYMOUS_CODING EcR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21740953	3R_21740953_SNP [dm3] 3R_25915231_SNP [dm6]	T	A	2.134e^-4	0.573	DOWNSTREAM CG42235 INTRON CG42235
2L	14134633	2L_14134633_SNP [dm3] 2L_14134633_SNP [dm6]	G	T	2.136e^-4	0.573	UTR_5_PRIME CG17341	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12608482	2L_12608482_SNP [dm3] 2L_12608482_SNP [dm6]	C	G	2.136e^-4	0.573	INTRON nub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	5890719	3L_5890719_SNP [dm3] 3L_5897619_SNP [dm6]	A	T	2.139e^-4	0.573	UPSTREAM CG5592 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	9903904	3R_9903904_SNP [dm3] 3R_14078182_SNP [dm6]	A	G	2.143e^-4	0.573	INTRON foxo
3L	3400799	3L_3400799_SNP [dm3] 3L_3400799_SNP [dm6]	A	G	2.143e^-4	0.573	DOWNSTREAM sty INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11904882	3L_11904882_SNP [dm3] 3L_11911782_SNP [dm6]	C	G	2.145e^-4	0.573	INTRON CG44837
3L	5890698	3L_5890698_SNP [dm3] 3L_5897598_SNP [dm6]	T	C	2.146e^-4	0.573	UPSTREAM CG5592 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	11313962	2R_11313962_DEL [dm3] 2R_15426457_DEL [dm6]	ACA	A	2.146e^-4	0.573	UTR_5_PRIME CG43729 DOWNSTREAM CG34188 INTRON CG43729
3R	25267325	3R_25267325_SNP [dm3] 3R_29441603_SNP [dm6]	T	G	2.150e^-4	0.573	INTRON Ptp99A	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	8423258	X_8423258_SNP [dm3] X_8529225_SNP [dm6]	C	T	2.152e^-4	0.573	INTRON Nrg & 1 other	TF binding site mE1_TFBS_cad
3L	11744029	3L_11744029_SNP [dm3] 3L_11750929_SNP [dm6]	C	T	2.153e^-4	0.573	UPSTREAM Gr68a INTRON CG6024
3R	26199104	3R_26199104_SNP [dm3] 3R_30373382_SNP [dm6]	T	C	2.156e^-4	0.573	DOWNSTREAM hdc INTERGENIC
2L	10665733	2L_10665733_SNP [dm3] 2L_10665733_SNP [dm6]	C	T	2.162e^-4	0.573	INTRON CG31871
3L	4101985	3L_4101985_SNP [dm3] 3L_4101985_SNP [dm6]	C	T	2.164e^-4	0.573	UTR_5_PRIME CG14995 UPSTREAM CG14995	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3L	2517979	3L_2517979_SNP [dm3] 3L_2517979_SNP [dm6]	G	C	2.166e^-4	0.573	INTRON Spn EXON CR45170
2R	7601447	2R_7601447_SNP [dm3] 2R_11713942_SNP [dm6]	C	T	2.171e^-4	0.573	INTRON pyr
2L	10717587	2L_10717587_SNP [dm3] 2L_10717587_SNP [dm6]	T	C	2.173e^-4	0.573	INTERGENIC
2R	10552520	2R_10552520_SNP [dm3] 2R_14665015_SNP [dm6]	G	A	2.175e^-4	0.573	SYNONYMOUS_CODING CG12861 DOWNSTREAM CG12860
3L	10273143	3L_10273143_SNP [dm3] 3L_10280043_SNP [dm6]	A	G	2.175e^-4	0.573	INTERGENIC
3L	4057018	3L_4057018_SNP [dm3] 3L_4057018_SNP [dm6]	T	C	2.180e^-4	0.573	INTRON CG1136	TF binding site mE1_TFBS_cad
X	2527439	X_2527439_SNP [dm3] X_2633406_SNP [dm6]	G	C	2.186e^-4	0.573	UTR_3_PRIME PI4KIIIalpha UPSTREAM sgg DOWNSTREAM PI4KIIIalpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	25307507	3R_25307507_SNP [dm3] 3R_29481785_SNP [dm6]	C	T	2.189e^-4	0.573	INTRON Ptp99A	TF binding site mE1_TFBS_cad
3R	20169559	3R_20169559_DEL [dm3] 3R_24343837_DEL [dm6]	GTTTATATAGTCAAT...	G	2.191e^-4	0.573	DOWNSTREAM CG5746 & 1 other INTERGENIC
3L	15842359	3L_15842359_SNP [dm3] 3L_15849259_SNP [dm6]	G	T	2.194e^-4	0.573	UTR_3_PRIME pHCl	TF binding site mE1_TFBS_kn
3R	12895616	3R_12895616_SNP [dm3] 3R_17069894_SNP [dm6]	A	T	2.196e^-4	0.573	UTR_3_PRIME Dad DOWNSTREAM Ns1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	14049364	2R_14049364_SNP [dm3] 2R_18161859_SNP [dm6]	G	A	2.196e^-4	0.573	NON_SYNONYMOUS_CODING CG10915
3L	3863339	3L_3863339_SNP [dm3] 3L_3863339_SNP [dm6]	G	T	2.198e^-4	0.573	DOWNSTREAM CR45379 INTERGENIC
3L	16813594	3L_16813594_SNP [dm3] 3L_16820494_SNP [dm6]	G	A	2.204e^-4	0.573	DOWNSTREAM nudC INTRON CG13024
X	16277867	X_16277867_SNP [dm3] X_16383834_SNP [dm6]	G	A	2.205e^-4	0.573	UPSTREAM CG9992 INTRON CG9992	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D
3L	3567751	3L_3567751_SNP [dm3] 3L_3567751_SNP [dm6]	T	G	2.205e^-4	0.573	INTRON Eip63E
2R	10518980	2R_10518980_SNP [dm3] 2R_14631475_SNP [dm6]	T	A	2.209e^-4	0.573	DOWNSTREAM CG10131 INTERGENIC
3R	7201802	3R_7201802_SNP [dm3] 3R_11376080_SNP [dm6]	C	T	2.209e^-4	0.573	SYNONYMOUS_CODING pros INTRON pros	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21583067	3R_21583067_SNP [dm3] 3R_25757345_SNP [dm6]	T	G	2.215e^-4	0.573	INTRON LpR1
3R	25098994	3R_25098994_SNP [dm3] 3R_29273272_SNP [dm6]	A	C	2.221e^-4	0.573	INTERGENIC	regulatory region REDfly_CRMs
2R	18954626	2R_18954626_SNP [dm3] 2R_23067103_SNP [dm6]	T	G	2.225e^-4	0.573	UTR_3_PRIME PPO3 UPSTREAM l_2_k09913	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	15365550	3R_15365550_SNP [dm3] 3R_19539828_SNP [dm6]	C	T	2.230e^-4	0.573	INTRON Dys
2R	11760017	2R_11760017_SNP [dm3] 2R_15872512_SNP [dm6]	A	G	2.232e^-4	0.573	SYNONYMOUS_CODING sli UTR_3_PRIME sli	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14662799	2R_14662799_SNP [dm3] 2R_18775294_SNP [dm6]	C	A	2.239e^-4	0.573	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	12437126	2R_12437126_SNP [dm3] 2R_16549621_SNP [dm6]	G	T	2.243e^-4	0.573	INTERGENIC
X	15670497	X_15670497_SNP [dm3] X_15776464_SNP [dm6]	C	T	2.245e^-4	0.573	SYNONYMOUS_CODING CG43672	TF binding site mE1_TFBS_sens
3R	27492569	3R_27492569_SNP [dm3] 3R_31666847_SNP [dm6]	T	C	2.245e^-4	0.573	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11482532	3L_11482532_SNP [dm3] 3L_11489432_SNP [dm6]	T	C	2.246e^-4	0.573	INTRON chrb	TF binding site BDTNP1_TFBS_dl
2L	1544416	2L_1544416_SNP [dm3] 2L_1544416_SNP [dm6]	A	T	2.257e^-4	0.573	INTERGENIC
3L	19423666	3L_19423666_SNP [dm3] 3L_19430566_SNP [dm6]	A	T	2.257e^-4	0.573	INTERGENIC
2R	9149677	2R_9149677_SNP [dm3] 2R_13262172_SNP [dm6]	C	T	2.258e^-4	0.573	UPSTREAM CG42319 INTRON CG42319
2L	10717434	2L_10717434_SNP [dm3] 2L_10717434_SNP [dm6]	A	T	2.258e^-4	0.573	INTERGENIC
2L	5444794	2L_5444794_INS [dm3] 2L_5444794_INS [dm6]	T	TATATA	2.262e^-4	0.573	INTERGENIC
2L	13494142	2L_13494142_SNP [dm3] 2L_13494142_SNP [dm6]	G	C	2.263e^-4	0.573	INTRON CG42784
3R	11015428	3R_11015428_SNP [dm3] 3R_15189706_SNP [dm6]	A	G	2.272e^-4	0.573	SYNONYMOUS_CODING Gyc88E	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18554925	3R_18554925_SNP [dm3] 3R_22729203_SNP [dm6]	G	A	2.273e^-4	0.573	SPLICE_SITE_REGION CG45049 INTRON CG45049
2L	10717543	2L_10717543_SNP [dm3] 2L_10717543_SNP [dm6]	G	C	2.273e^-4	0.573	INTERGENIC
3R	3883739	3R_3883739_SNP [dm3] 3R_8058017_SNP [dm6]	A	G	2.274e^-4	0.573	INTERGENIC
3L	6596030	3L_6596030_DEL [dm3] 3L_6602930_DEL [dm6]	ATAAA	A	2.285e^-4	0.573	UPSTREAM CG8368 INTRON ndl
X	4364372	X_4364372_SNP [dm3] X_4470339_SNP [dm6]	C	T	2.287e^-4	0.573	INTRON bi & 1 other
2R	11869253	2R_11869253_SNP [dm3] 2R_15981748_SNP [dm6]	G	A	2.289e^-4	0.573	SYNONYMOUS_CODING Strn-Mlck
X	17250626	X_17250626_SNP [dm3] X_17356593_SNP [dm6]	T	C	2.290e^-4	0.573	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	5309749	3L_5309749_SNP [dm3] 3L_5316649_SNP [dm6]	T	C	2.293e^-4	0.573	UPSTREAM CR45741 INTERGENIC
X	13968261	X_13968261_SNP [dm3] X_14074228_SNP [dm6]	A	T	2.297e^-4	0.573	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	21787757	3R_21787757_SNP [dm3] 3R_25962035_SNP [dm6]	A	G	2.300e^-4	0.573	UTR_5_PRIME boss DOWNSTREAM CG14540
3L	7293372	3L_7293372_SNP [dm3] 3L_7300272_SNP [dm6]	T	A	2.300e^-4	0.573	INTRON unc-13-4A
3L	5523792	3L_5523792_SNP [dm3] 3L_5530692_SNP [dm6]	T	C	2.304e^-4	0.573	INTERGENIC
2L	11917224	2L_11917224_SNP [dm3] 2L_11917224_SNP [dm6]	C	G	2.305e^-4	0.573	INTRON Pde1c
3L	8544790	3L_8544790_SNP [dm3] 3L_8551690_SNP [dm6]	T	C	2.308e^-4	0.573	INTRON rhea
X	14153331	X_14153331_SNP [dm3] X_14259298_SNP [dm6]	A	T	2.308e^-4	0.573	DOWNSTREAM mud INTERGENIC
X	12621733	X_12621733_SNP [dm3] X_12727700_SNP [dm6]	T	G	2.315e^-4	0.573	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9742692	2R_9742692_SNP [dm3] 2R_13855187_SNP [dm6]	G	T	2.321e^-4	0.573	NON_SYNONYMOUS_CODING CG6553 UPSTREAM CG6543 DOWNSTREAM tum EXON CR44367
2L	3709663	2L_3709663_SNP [dm3] 2L_3709663_SNP [dm6]	C	T	2.324e^-4	0.573	SYNONYMOUS_CODING cutlet
3R	15759130	3R_15759130_SNP [dm3] 3R_19933408_SNP [dm6]	C	G	2.325e^-4	0.573	SYNONYMOUS_CODING mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3000404	3L_3000404_SNP [dm3] 3L_3000404_SNP [dm6]	C	T	2.326e^-4	0.573	INTERGENIC
3L	15842322	3L_15842322_SNP [dm3] 3L_15849222_SNP [dm6]	G	A	2.331e^-4	0.573	UTR_3_PRIME pHCl	TF binding site mE1_TFBS_kn
2L	17354335	2L_17354335_DEL [dm3] 2L_17354335_DEL [dm6]	CAAGAGCAGCAAAGTGAAAA...	T	2.336e^-4	0.573	UPSTREAM CR44345 EXON CR43239
X	11737449	X_11737449_SNP [dm3] X_11843416_SNP [dm6]	T	C	2.340e^-4	0.573	SYNONYMOUS_CODING CG15740	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4596800	2L_4596800_SNP [dm3] 2L_4596800_SNP [dm6]	A	C	2.343e^-4	0.573	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_Kr
X	9055953	X_9055953_SNP [dm3] X_9161920_SNP [dm6]	T	C	2.344e^-4	0.573	NON_SYNONYMOUS_CODING Zpr1 UPSTREAM CG44532	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11877450	3L_11877450_DEL [dm3] 3L_11884350_DEL [dm6]	ATTTTCGA	A	2.349e^-4	0.573	DOWNSTREAM CCDC151 INTRON CG44837
X	6640462	X_6640462_SNP [dm3] X_6746429_SNP [dm6]	A	G	2.355e^-4	0.573	DOWNSTREAM CR44895 EXON CR44964	TF binding site mE1_TFBS_HSA
2R	11760179	2R_11760179_SNP [dm3] 2R_15872674_SNP [dm6]	C	T	2.357e^-4	0.573	SYNONYMOUS_CODING sli UTR_3_PRIME sli	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3310193	2L_3310193_SNP [dm3] 2L_3310193_SNP [dm6]	C	T	2.358e^-4	0.573	SYNONYMOUS_CODING CG15406 INTRON CG3277
3L	6978393	3L_6978393_SNP [dm3] 3L_6985293_SNP [dm6]	C	A	2.361e^-4	0.573	UPSTREAM CG32388 & 1 other INTERGENIC
3R	11014361	3R_11014361_SNP [dm3] 3R_15188639_SNP [dm6]	G	C	2.364e^-4	0.573	NON_SYNONYMOUS_CODING Gyc88E	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10975380	2L_10975380_SNP [dm3] 2L_10975380_SNP [dm6]	A	T	2.365e^-4	0.573	UPSTREAM abo DOWNSTREAM l_2_06225 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	7372127	2R_7372127_SNP [dm3] 2R_11484622_SNP [dm6]	G	A	2.368e^-4	0.573	INTRON inv
X	3898497	X_3898497_SNP [dm3] X_4004464_SNP [dm6]	A	G	2.369e^-4	0.573	INTERGENIC
3L	19654589	3L_19654589_SNP [dm3] 3L_19661489_SNP [dm6]	A	G	2.369e^-4	0.573	INTRON tey
2L	333346	2L_333346_SNP [dm3] 2L_333346_SNP [dm6]	T	C	2.370e^-4	0.573	INTRON Plc21C	TF binding site mE1_TFBS_cad
3L	11061195	3L_11061195_SNP [dm3] 3L_11068095_SNP [dm6]	T	C	2.376e^-4	0.573	SYNONYMOUS_CODING SuUR UTR_3_PRIME CG45101 DOWNSTREAM CG6310
3R	7121785	3R_7121785_SNP [dm3] 3R_11296063_SNP [dm6]	T	A	2.387e^-4	0.573	INTRON CR31386	TF binding site mE1_TFBS_inv
2L	6727562	2L_6727562_SNP [dm3] 2L_6727562_SNP [dm6]	G	T	2.388e^-4	0.573	INTRON Liprin-alpha
2L	8308437	2L_8308437_SNP [dm3] 2L_8308437_SNP [dm6]	A	G	2.389e^-4	0.573	UTR_5_PRIME CG7818 UPSTREAM Ostgamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	12355267	2R_12355267_SNP [dm3] 2R_16467762_SNP [dm6]	A	T	2.389e^-4	0.573	UPSTREAM CheB53b DOWNSTREAM CheB53a INTERGENIC
3R	20376670	3R_20376670_SNP [dm3] 3R_24550948_SNP [dm6]	C	A	2.396e^-4	0.573	INTRON Esyt2
2R	13947766	2R_13947766_DEL [dm3] 2R_18060261_DEL [dm6]	AA	A	2.399e^-4	0.573	INTERGENIC
3R	20170433	3R_20170433_SNP [dm3] 3R_24344711_SNP [dm6]	C	T	2.405e^-4	0.573	UTR_3_PRIME CG5746 DOWNSTREAM Ms
X	8644477	X_8644477_SNP [dm3] X_8750444_SNP [dm6]	A	G	2.417e^-4	0.573	INTERGENIC
2L	3261938	2L_3261938_SNP [dm3] 2L_3261938_SNP [dm6]	A	G	2.418e^-4	0.573	UPSTREAM CR45337 EXON CR45338
3L	8275595	3L_8275595_SNP [dm3] 3L_8282495_SNP [dm6]	T	C	2.423e^-4	0.573	DOWNSTREAM cert & 1 other INTERGENIC
3R	20330197	3R_20330197_SNP [dm3] 3R_24504475_SNP [dm6]	A	T	2.427e^-4	0.573	INTERGENIC
2R	10548529	2R_10548529_SNP [dm3] 2R_14661024_SNP [dm6]	T	C	2.427e^-4	0.573	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13207858	2L_13207858_SNP [dm3] 2L_13207858_SNP [dm6]	T	C	2.436e^-4	0.573	INTRON Pect
2L	13207887	2L_13207887_SNP [dm3] 2L_13207887_SNP [dm6]	G	C	2.436e^-4	0.573	INTRON Pect
2R	12679976	2R_12679976_SNP [dm3] 2R_16792471_SNP [dm6]	A	T	2.439e^-4	0.573	UTR_3_PRIME CG5522 UPSTREAM CG15919 DOWNSTREAM CG15615
3L	16051815	3L_16051815_SNP [dm3] 3L_16058715_SNP [dm6]	G	T	2.440e^-4	0.573	INTRON Mbs
3L	14480280	3L_14480280_SNP [dm3] 3L_14487180_SNP [dm6]	C	T	2.449e^-4	0.573	INTRON bbg
2L	11471397	2L_11471397_SNP [dm3] 2L_11471397_SNP [dm6]	T	C	2.450e^-4	0.573	INTERGENIC	TF binding site mE1_TFBS_cad
X	9502355	X_9502355_SNP [dm3] X_9608322_SNP [dm6]	T	A	2.450e^-4	0.573	UPSTREAM CG42797 INTRON Aats-lys	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5444824	2L_5444824_SNP [dm3] 2L_5444824_SNP [dm6]	A	G	2.451e^-4	0.573	INTERGENIC
2L	4979278	2L_4979278_SNP [dm3] 2L_4979278_SNP [dm6]	G	A	2.455e^-4	0.573	START_GAINED CG8891 UTR_5_PRIME CG8891 DOWNSTREAM CG8892 & 1 other	TF binding site mE1_TFBS_chinmo
2L	4207614	2L_4207614_SNP [dm3] 2L_4207614_SNP [dm6]	C	T	2.465e^-4	0.573	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7795479	3L_7795479_SNP [dm3] 3L_7802379_SNP [dm6]	C	T	2.466e^-4	0.573	INTRON CG32369
3L	11907613	3L_11907613_SNP [dm3] 3L_11914513_SNP [dm6]	G	T	2.470e^-4	0.573	INTRON CG44837
3L	13877765	3L_13877765_SNP [dm3] 3L_13884665_SNP [dm6]	A	G	2.473e^-4	0.573	INTRON dysc	TF binding site BDTNP1_TFBS_dl
3R	15762700	3R_15762700_SNP [dm3] 3R_19936978_SNP [dm6]	A	C	2.475e^-4	0.573	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14219777	3R_14219777_SNP [dm3] 3R_18394055_SNP [dm6]	C	T	2.477e^-4	0.573	INTRON Vha100-2
3L	11170904	3L_11170904_SNP [dm3] 3L_11177804_SNP [dm6]	A	G	2.478e^-4	0.573	UTR_3_PRIME GlcAT-P DOWNSTREAM CG14142
X	6621289	X_6621289_SNP [dm3] X_6727256_SNP [dm6]	A	T	2.484e^-4	0.573	UPSTREAM CG3168 INTRON CG3168	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10197800	3R_10197800_SNP [dm3] 3R_14372078_SNP [dm6]	A	G	2.484e^-4	0.573	UPSTREAM snoRNA:Me18S-G1189 INTRON NK7.1
2L	6066284	2L_6066284_SNP [dm3] 2L_6066284_SNP [dm6]	G	C	2.491e^-4	0.573	NON_SYNONYMOUS_CODING CG9147 UPSTREAM Fbw5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3782703	3L_3782703_DEL [dm3] 3L_3782703_DEL [dm6]	TCT	T	2.495e^-4	0.573	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	12609716	2L_12609716_SNP [dm3] 2L_12609716_SNP [dm6]	T	C	2.499e^-4	0.573	DOWNSTREAM Ref2 INTRON nub	TF binding site BDTNP1_TFBS_dl
2R	14980444	2R_14980444_INS [dm3] 2R_19092939_INS [dm6]	G	ATA	2.503e^-4	0.573	INTRON 5-HT1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27467307	3R_27467307_SNP [dm3] 3R_31641585_SNP [dm6]	G	A	2.505e^-4	0.573	INTRON kek6
3L	4354755	3L_4354755_SNP [dm3] 3L_4354755_SNP [dm6]	G	A	2.506e^-4	0.573	INTRON Cip4
3R	17079990	3R_17079990_SNP [dm3] 3R_21254268_SNP [dm6]	C	T	2.510e^-4	0.573	INTRON ETHR
3L	1102710	3L_1102710_SNP [dm3] 3L_1102710_SNP [dm6]	T	C	2.514e^-4	0.573	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	16085488	X_16085488_INS [dm3] X_16191455_INS [dm6]	T	CTACA	2.523e^-4	0.573	UPSTREAM mir-985 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	10870003	2L_10870003_DEL [dm3] 2L_10870003_DEL [dm6]	AA	A	2.523e^-4	0.573	UPSTREAM CG12517 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	3040187	2L_3040187_SNP [dm3] 2L_3040187_SNP [dm6]	T	C	2.525e^-4	0.573	UTR_5_PRIME CG17221 UPSTREAM cnir INTRON CG17221	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9784559	3R_9784559_DEL [dm3] 3R_13958837_DEL [dm6]	AA	A	2.529e^-4	0.573	UTR_5_PRIME Ipp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10031493	3L_10031493_SNP [dm3] 3L_10038393_SNP [dm6]	G	C	2.529e^-4	0.573	INTRON dpr6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12364034	2L_12364034_SNP [dm3] 2L_12364034_SNP [dm6]	T	C	2.533e^-4	0.573	INTRON bru-2
3L	6677584	3L_6677584_SNP [dm3] 3L_6684484_SNP [dm6]	G	A	2.539e^-4	0.573	INTERGENIC
X	11526074	X_11526074_INS [dm3] X_11632041_INS [dm6]	G	GAATGGGTG	2.540e^-4	0.573	INTRON Ptp10D	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17155470	X_17155470_SNP [dm3] X_17261437_SNP [dm6]	C	T	2.541e^-4	0.573	INTRON f
2L	10665780	2L_10665780_SNP [dm3] 2L_10665780_SNP [dm6]	T	C	2.542e^-4	0.573	INTRON CG31871
2L	294711	2L_294711_SNP [dm3] 2L_294711_SNP [dm6]	T	A	2.544e^-4	0.573	UPSTREAM Hop & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6097356	2R_6097356_SNP [dm3] 2R_10209851_SNP [dm6]	C	G	2.548e^-4	0.573	INTRON Hr46 & 1 other
3L	7618961	3L_7618961_SNP [dm3] 3L_7625861_SNP [dm6]	C	T	2.549e^-4	0.573	SYNONYMOUS_CODING CG33275	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	13707522	2R_13707522_SNP [dm3] 2R_17820017_SNP [dm6]	C	T	2.550e^-4	0.573	INTRON grh	transposable element FlyBase
2L	3310402	2L_3310402_SNP [dm3] 2L_3310402_SNP [dm6]	C	T	2.550e^-4	0.573	INTRON CG3277 & 1 other
3L	1287639	3L_1287639_SNP [dm3] 3L_1287639_SNP [dm6]	T	A	2.551e^-4	0.573	INTRON CG32333
X	11526099	X_11526099_SNP [dm3] X_11632066_SNP [dm6]	A	G	2.557e^-4	0.573	INTRON Ptp10D	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15046893	3L_15046893_SNP [dm3] 3L_15053793_SNP [dm6]	T	C	2.561e^-4	0.573	UTR_3_PRIME CG18649 UPSTREAM CG43680 & 1 other INTRON Sytbeta
2L	19239467	2L_19239467_SNP [dm3] 2L_19239467_SNP [dm6]	C	A	2.563e^-4	0.573	INTERGENIC
2L	9854994	2L_9854994_SNP [dm3] 2L_9854994_SNP [dm6]	A	G	2.565e^-4	0.573	INTRON nAChRalpha6
2R	7595236	2R_7595236_SNP [dm3] 2R_11707731_SNP [dm6]	T	G	2.568e^-4	0.573	INTERGENIC
2R	9256017	2R_9256017_SNP [dm3] 2R_13368512_SNP [dm6]	G	T	2.568e^-4	0.573	INTERGENIC
2L	3039256	2L_3039256_SNP [dm3] 2L_3039256_SNP [dm6]	C	T	2.569e^-4	0.573	UPSTREAM CG17221 DOWNSTREAM CG17260 INTRON cnir	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	3039567	2L_3039567_SNP [dm3] 2L_3039567_SNP [dm6]	C	T	2.569e^-4	0.573	SYNONYMOUS_CODING cnir UPSTREAM CG17221 DOWNSTREAM CG17260	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	16765126	2R_16765126_SNP [dm3] 2R_20877621_SNP [dm6]	C	A	2.570e^-4	0.573	NON_SYNONYMOUS_CODING Ipk1 SPLICE_SITE_REGION Ipk1
X	16878162	X_16878162_SNP [dm3] X_16984129_SNP [dm6]	C	T	2.574e^-4	0.573	INTRON CG45002
3L	11747381	3L_11747381_DEL [dm3] 3L_11754281_DEL [dm6]	GGACACAG	G	2.576e^-4	0.573	INTRON CG6024
3L	12016444	3L_12016444_SNP [dm3] 3L_12023344_SNP [dm6]	C	T	2.579e^-4	0.573	INTRON rols
2L	14055980	2L_14055980_SNP [dm3] 2L_14055980_SNP [dm6]	G	A	2.584e^-4	0.573	INTRON nAChRalpha5
3L	19968271	3L_19968271_SNP [dm3] 3L_19975171_SNP [dm6]	T	C	2.591e^-4	0.573	INTRON Ac76E
3L	15835021	3L_15835021_SNP [dm3] 3L_15841921_SNP [dm6]	A	T	2.592e^-4	0.573	INTRON CG32150
2R	10232499	2R_10232499_SNP [dm3] 2R_14344994_SNP [dm6]	T	C	2.593e^-4	0.573	INTRON Shroom
2R	18180520	2R_18180520_SNP [dm3] 2R_22293015_SNP [dm6]	C	T	2.593e^-4	0.573	UPSTREAM CG5819 DOWNSTREAM CR43422 INTERGENIC
2R	14664147	2R_14664147_SNP [dm3] 2R_18776642_SNP [dm6]	C	T	2.594e^-4	0.573	SYNONYMOUS_CODING CG15093 EXON CR43964	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	11505585	X_11505585_SNP [dm3] X_11611552_SNP [dm6]	G	T	2.613e^-4	0.577	UTR_5_PRIME CG2247 UPSTREAM CG1703	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10429219	2R_10429219_SNP [dm3] 2R_14541714_SNP [dm6]	A	T	2.625e^-4	0.578	INTRON ttv
3R	11769335	3R_11769335_SNP [dm3] 3R_15943613_SNP [dm6]	A	C	2.633e^-4	0.578	INTRON Sap47	TF binding site mE1_TFBS_cad
3L	14479928	3L_14479928_SNP [dm3] 3L_14486828_SNP [dm6]	G	A	2.641e^-4	0.578	INTRON bbg
3L	16063919	3L_16063919_SNP [dm3] 3L_16070819_SNP [dm6]	A	T	2.642e^-4	0.578	INTRON Mbs
3R	2202152	3R_2202152_SNP [dm3] 3R_6376430_SNP [dm6]	C	T	2.643e^-4	0.578	NON_SYNONYMOUS_CODING CG42564 DOWNSTREAM snoRNA:83E4-5 & 1 other
2L	1935930	2L_1935930_SNP [dm3] 2L_1935930_SNP [dm6]	C	A	2.647e^-4	0.578	SYNONYMOUS_CODING CG7337	TF binding site mE1_TFBS_cad
3L	10523134	3L_10523134_SNP [dm3] 3L_10530034_SNP [dm6]	T	C	2.648e^-4	0.578	INTRON A2bp1
X	14154093	X_14154093_SNP [dm3] X_14260060_SNP [dm6]	C	G	2.652e^-4	0.578	INTERGENIC
2L	2844607	2L_2844607_SNP [dm3] 2L_2844607_SNP [dm6]	G	C	2.658e^-4	0.578	UTR_3_PRIME CG18557 UPSTREAM CG18558	TF binding site mE1_TFBS_cad
2L	4307470	2L_4307470_SNP [dm3] 2L_4307470_SNP [dm6]	C	T	2.659e^-4	0.578	INTRON tutl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12257583	3R_12257583_SNP [dm3] 3R_16431861_SNP [dm6]	G	A	2.660e^-4	0.578	UPSTREAM tRNA:CR31282 & 1 other INTRON CG31279	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	22264490	X_22264490_SNP [dm3] X_22862654_SNP [dm6]	C	G	2.661e^-4	0.578	INTRON CG42346	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15566897	3R_15566897_SNP [dm3] 3R_19741175_SNP [dm6]	G	T	2.666e^-4	0.578	INTRON GluClalpha	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	25575906	3R_25575906_SNP [dm3] 3R_29750184_SNP [dm6]	C	T	2.671e^-4	0.578	INTRON yata	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1666879	3L_1666879_SNP [dm3] 3L_1666879_SNP [dm6]	C	G	2.674e^-4	0.578	UPSTREAM snoRNA:Me28S-A2634c & 1 other DOWNSTREAM snoRNA:Me28S-A2634a & 2 others INTRON Uhg7	TF binding site BDTNP1_TFBS_z mE1_TFBS_zfh1
2L	10532228	2L_10532228_SNP [dm3] 2L_10532228_SNP [dm6]	A	G	2.683e^-4	0.578	DOWNSTREAM Lip4 INTRON CG18301
2R	9151301	2R_9151301_SNP [dm3] 2R_13263796_SNP [dm6]	C	T	2.683e^-4	0.578	INTRON CG42319
3R	12079377	3R_12079377_SNP [dm3] 3R_16253655_SNP [dm6]	T	A	2.683e^-4	0.578	INTRON tara	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9148978	2R_9148978_SNP [dm3] 2R_13261473_SNP [dm6]	C	T	2.686e^-4	0.578	INTRON CG42319
2R	14664440	2R_14664440_SNP [dm3] 2R_18776935_SNP [dm6]	A	G	2.687e^-4	0.578	UTR_5_PRIME CG15093 EXON CR43964	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	17025239	2R_17025239_SNP [dm3] 2R_21137734_SNP [dm6]	C	T	2.689e^-4	0.578	INTRON Magi
3R	26894727	3R_26894727_SNP [dm3] 3R_31069005_SNP [dm6]	C	T	2.699e^-4	0.578	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3R	3762392	3R_3762392_SNP [dm3] 3R_7936670_SNP [dm6]	C	T	2.700e^-4	0.578	INTRON dsx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	9612501	3R_9612501_SNP [dm3] 3R_13786779_SNP [dm6]	G	A	2.702e^-4	0.578	UPSTREAM CR45590 INTERGENIC
2L	2266067	2L_2266067_SNP [dm3] 2L_2266067_SNP [dm6]	G	A	2.703e^-4	0.578	UPSTREAM CG34049 INTERGENIC
2L	3448740	2L_3448740_SNP [dm3] 2L_3448740_SNP [dm6]	T	G	2.706e^-4	0.578	UPSTREAM Snx1 INTERGENIC
3R	20330186	3R_20330186_SNP [dm3] 3R_24504464_SNP [dm6]	A	C	2.707e^-4	0.578	INTERGENIC
3R	25131427	3R_25131427_SNP [dm3] 3R_29305705_SNP [dm6]	T	G	2.711e^-4	0.578	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	26893732	3R_26893732_SNP [dm3] 3R_31068010_SNP [dm6]	A	T	2.713e^-4	0.578	INTRON Sox100B
2L	3899313	2L_3899313_SNP [dm3] 2L_3899313_SNP [dm6]	G	C	2.714e^-4	0.578	INTRON capu
2L	11466119	2L_11466119_SNP [dm3] 2L_11466119_SNP [dm6]	A	C	2.715e^-4	0.578	INTERGENIC
3L	13061036	3L_13061036_SNP [dm3] 3L_13067936_SNP [dm6]	C	T	2.717e^-4	0.578	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	10244302	3L_10244302_SNP [dm3] 3L_10251202_SNP [dm6]	T	C	2.723e^-4	0.578	INTERGENIC
3R	11022714	3R_11022714_SNP [dm3] 3R_15196992_SNP [dm6]	T	G	2.726e^-4	0.578	UTR_5_PRIME CG42542 UPSTREAM CG6752 INTRON CG42542	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Ubx
2L	9073671	2L_9073671_SNP [dm3] 2L_9073671_SNP [dm6]	G	T	2.731e^-4	0.578	INTERGENIC
X	4171435	X_4171435_SNP [dm3] X_4277402_SNP [dm6]	A	T	2.734e^-4	0.578	UPSTREAM CG15577 DOWNSTREAM CG15578 INTERGENIC
2L	2879148	2L_2879148_SNP [dm3] 2L_2879148_SNP [dm6]	T	C	2.735e^-4	0.578	UTR_5_PRIME betaggt-II UPSTREAM Prx6005 DOWNSTREAM CG31950	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9833077	3R_9833077_SNP [dm3] 3R_14007355_SNP [dm6]	A	T	2.741e^-4	0.579	INTRON rdx
2L	9303181	2L_9303181_SNP [dm3] 2L_9303181_SNP [dm6]	G	A	2.747e^-4	0.579	DOWNSTREAM Ggamma30A INTERGENIC
2R	16246186	2R_16246186_SNP [dm3] 2R_20358681_SNP [dm6]	G	A	2.752e^-4	0.579	INTERGENIC
2R	17151120	2R_17151120_INS [dm3] 2R_21263615_INS [dm6]	T	TT	2.752e^-4	0.579	INTRON Rgk3
2R	1373273	2R_1373273_SNP [dm3] 2R_5485768_SNP [dm6]	C	T	2.753e^-4	0.579	INTRON CG30440	transposable element FlyBase
2R	1850740	2R_1850740_SNP [dm3] 2R_5963235_SNP [dm6]	T	C	2.768e^-4	0.581	SPLICE_SITE_REGION CG7881 INTRON CG7881
3R	27474567	3R_27474567_SNP [dm3] 3R_31648845_SNP [dm6]	G	A	2.778e^-4	0.582	INTRON kek6
3R	12017774	3R_12017774_SNP [dm3] 3R_16192052_SNP [dm6]	A	C	2.782e^-4	0.582	INTRON sra
3L	14298950	3L_14298950_SNP [dm3] 3L_14305850_SNP [dm6]	G	A	2.783e^-4	0.582	INTRON fz
2L	10712189	2L_10712189_SNP [dm3] 2L_10712189_SNP [dm6]	A	T	2.783e^-4	0.582	INTERGENIC
3R	11011122	3R_11011122_SNP [dm3] 3R_15185400_SNP [dm6]	A	G	2.787e^-4	0.582	INTRON Gyc88E
3R	20281341	3R_20281341_SNP [dm3] 3R_24455619_SNP [dm6]	T	A	2.789e^-4	0.582	INTRON nAChRalpha1
2L	11072958	2L_11072958_SNP [dm3] 2L_11072958_SNP [dm6]	T	A	2.799e^-4	0.582	INTERGENIC	TF binding site mE1_TFBS_cad
X	9478781	X_9478781_SNP [dm3] X_9584748_SNP [dm6]	G	C	2.801e^-4	0.582	UPSTREAM Hex-A DOWNSTREAM CR45541 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	13991496	2R_13991496_DEL [dm3] 2R_18103991_DEL [dm6]	GG	G	2.804e^-4	0.582	INTRON CG5756	TF binding site mE1_TFBS_cad
3L	5660853	3L_5660853_SNP [dm3] 3L_5667753_SNP [dm6]	A	T	2.806e^-4	0.582	INTRON sif
2R	13845428	2R_13845428_SNP [dm3] 2R_17957923_SNP [dm6]	T	G	2.818e^-4	0.582	INTERGENIC
3R	25570944	3R_25570944_SNP [dm3] 3R_29745222_SNP [dm6]	G	T	2.821e^-4	0.582	UPSTREAM IntS11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3042091	2L_3042091_SNP [dm3] 2L_3042091_SNP [dm6]	C	T	2.822e^-4	0.582	UPSTREAM CG17261 DOWNSTREAM CG17221 INTERGENIC
3L	5793843	3L_5793843_SNP [dm3] 3L_5800743_SNP [dm6]	A	G	2.823e^-4	0.582	INTRON S6k	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6640114	X_6640114_SNP [dm3] X_6746081_SNP [dm6]	T	C	2.829e^-4	0.582	DOWNSTREAM CR44964 EXON CR44895
3L	11666730	3L_11666730_SNP [dm3] 3L_11673630_SNP [dm6]	G	A	2.832e^-4	0.582	INTRON CG32085
3L	11101020	3L_11101020_SNP [dm3] 3L_11107920_SNP [dm6]	T	C	2.834e^-4	0.582	UPSTREAM CG12522 & 1 other DOWNSTREAM CG34012 INTERGENIC
2L	10698556	2L_10698556_SNP [dm3] 2L_10698556_SNP [dm6]	T	C	2.837e^-4	0.582	UPSTREAM CG7300 DOWNSTREAM CR44181 & 1 other INTERGENIC	TF binding site mE1_TFBS_ftz_f1
2R	15360306	2R_15360306_SNP [dm3] 2R_19472801_SNP [dm6]	T	C	2.841e^-4	0.582	INTRON par-1
X	17156080	X_17156080_SNP [dm3] X_17262047_SNP [dm6]	A	G	2.843e^-4	0.582	UPSTREAM f INTRON f
3L	8271900	3L_8271900_SNP [dm3] 3L_8278800_SNP [dm6]	G	A	2.845e^-4	0.582	SYNONYMOUS_CODING Dscam4	TF binding site mE1_TFBS_cad
X	14678029	X_14678029_SNP [dm3] X_14783996_SNP [dm6]	G	A	2.847e^-4	0.582	NON_SYNONYMOUS_CODING Ag5r2 DOWNSTREAM Ag5r
2L	294816	2L_294816_SNP [dm3] 2L_294816_SNP [dm6]	G	C	2.848e^-4	0.582	UPSTREAM Hop & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7147741	3R_7147741_SNP [dm3] 3R_11322019_SNP [dm6]	C	T	2.851e^-4	0.582	INTERGENIC
3R	23205887	3R_23205887_SNP [dm3] 3R_27380165_SNP [dm6]	T	G	2.853e^-4	0.582	UTR_3_PRIME side INTRON side
2L	1543787	2L_1543787_SNP [dm3] 2L_1543787_SNP [dm6]	T	G	2.860e^-4	0.582	INTERGENIC
X	9207559	X_9207559_SNP [dm3] X_9313526_SNP [dm6]	T	C	2.860e^-4	0.582	INTERGENIC
X	9778218	X_9778218_SNP [dm3] X_9884185_SNP [dm6]	T	A	2.861e^-4	0.582	UPSTREAM CG9691 DOWNSTREAM CG9689 INTERGENIC
3R	4273304	3R_4273304_SNP [dm3] 3R_8447582_SNP [dm6]	G	A	2.861e^-4	0.582	INTRON CG45263
X	22264567	X_22264567_SNP [dm3] X_22862731_SNP [dm6]	G	A	2.864e^-4	0.582	INTRON CG42346	TF binding site mE1_TFBS_HSA
X	9055989	X_9055989_SNP [dm3] X_9161956_SNP [dm6]	G	C	2.865e^-4	0.582	NON_SYNONYMOUS_CODING Zpr1 UPSTREAM CG44532	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4101981	3L_4101981_SNP [dm3] 3L_4101981_SNP [dm6]	G	A	2.871e^-4	0.582	UTR_5_PRIME CG14995 UPSTREAM CG14995	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3L	19953646	3L_19953646_SNP [dm3] 3L_19960546_SNP [dm6]	G	C	2.877e^-4	0.583	INTRON Ac76E
2R	14662796	2R_14662796_SNP [dm3] 2R_18775291_SNP [dm6]	A	G	2.880e^-4	0.583	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	1829812	3L_1829812_SNP [dm3] 3L_1829812_SNP [dm6]	C	A	2.891e^-4	0.583	UPSTREAM Cpr62Ba INTRON Cpr62Ba
3R	11018091	3R_11018091_SNP [dm3] 3R_15192369_SNP [dm6]	A	G	2.891e^-4	0.583	SYNONYMOUS_CODING CG6752 UPSTREAM mir-3644
2L	9596874	2L_9596874_SNP [dm3] 2L_9596874_SNP [dm6]	A	T	2.891e^-4	0.583	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	12133583	3R_12133583_SNP [dm3] 3R_16307861_SNP [dm6]	T	C	2.892e^-4	0.583	INTRON Zip89B	TF binding site mE1_TFBS_HSA
3L	910152	3L_910152_SNP [dm3] 3L_910152_SNP [dm6]	G	A	2.908e^-4	0.585	SYNONYMOUS_CODING nerfin-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14066037	3L_14066037_SNP [dm3] 3L_14072937_SNP [dm6]	C	T	2.912e^-4	0.585	SYNONYMOUS_CODING Pex1
3R	4279607	3R_4279607_SNP [dm3] 3R_8453885_SNP [dm6]	C	G	2.914e^-4	0.585	INTRON CG45263
3L	7883481	3L_7883481_SNP [dm3] 3L_7890381_SNP [dm6]	G	A	2.916e^-4	0.585	INTRON CG32365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13604427	3R_13604427_SNP [dm3] 3R_17778705_SNP [dm6]	T	C	2.917e^-4	0.585	SYNONYMOUS_CODING CG43102	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13128018	X_13128018_SNP [dm3] X_13233985_SNP [dm6]	T	A	2.923e^-4	0.585	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
2R	16919812	2R_16919812_SNP [dm3] 2R_21032307_SNP [dm6]	T	C	2.926e^-4	0.585	INTERGENIC
X	3374769	X_3374769_SNP [dm3] X_3480736_SNP [dm6]	A	T	2.927e^-4	0.585	SPLICE_SITE_REGION CG10804 INTRON CR44999 & 1 other
2L	10452646	2L_10452646_SNP [dm3] 2L_10452646_SNP [dm6]	A	T	2.933e^-4	0.585	UPSTREAM ppk10 DOWNSTREAM CG5322 INTERGENIC
2L	6811752	2L_6811752_SNP [dm3] 2L_6811752_SNP [dm6]	A	T	2.934e^-4	0.585	UPSTREAM CR44081 INTERGENIC
3L	10795342	3L_10795342_SNP [dm3] 3L_10802242_SNP [dm6]	C	T	2.943e^-4	0.586	UTR_3_PRIME CG12523 DOWNSTREAM CG12523
2L	11969832	2L_11969832_SNP [dm3] 2L_11969832_SNP [dm6]	T	A	2.948e^-4	0.586	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	18144718	3R_18144718_SNP [dm3] 3R_22318996_SNP [dm6]	G	A	2.951e^-4	0.586	SPLICE_SITE_REGION CG34377 INTRON CG34377	TF binding site mE1_TFBS_chinmo
2L	910348	2L_910348_SNP [dm3] 2L_910348_SNP [dm6]	C	A	2.959e^-4	0.586	INTERGENIC
3L	3786947	3L_3786947_SNP [dm3] 3L_3786947_SNP [dm6]	T	A	2.971e^-4	0.586	INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14736460	3L_14736460_SNP [dm3] 3L_14743360_SNP [dm6]	C	A	2.975e^-4	0.586	INTRON ome	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	18039644	X_18039644_SNP [dm3] X_18145611_SNP [dm6]	G	C	2.978e^-4	0.586	INTERGENIC
2L	295013	2L_295013_SNP [dm3] 2L_295013_SNP [dm6]	G	A	2.988e^-4	0.586	UPSTREAM Hop & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	7814481	2L_7814481_SNP [dm3] 2L_7814481_SNP [dm6]	T	C	2.988e^-4	0.586	INTRON LanB1
2R	7919877	2R_7919877_SNP [dm3] 2R_12032372_SNP [dm6]	A	C	2.994e^-4	0.586	SYNONYMOUS_CODING pds5
3R	11015900	3R_11015900_SNP [dm3] 3R_15190178_SNP [dm6]	G	T	2.995e^-4	0.586	UTR_3_PRIME Gyc88E DOWNSTREAM CG6752	TF binding site mE1_TFBS_cad
X	13968425	X_13968425_SNP [dm3] X_14074392_SNP [dm6]	C	T	2.995e^-4	0.586	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24600792	3R_24600792_INS [dm3] 3R_28775070_INS [dm6]	A	AA	2.996e^-4	0.586	INTERGENIC
3R	26358094	3R_26358094_SNP [dm3] 3R_30532372_SNP [dm6]	C	A	2.997e^-4	0.586	UPSTREAM tmod & 1 other EXON CR45553	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3310458	2L_3310458_SNP [dm3] 2L_3310458_SNP [dm6]	A	T	2.997e^-4	0.586	INTRON CG3277 & 1 other
2L	18366705	2L_18366705_SNP [dm3] 2L_18366705_SNP [dm6]	C	G	3.001e^-4	0.586	INTRON Fas3
2R	12353218	2R_12353218_SNP [dm3] 2R_16465713_SNP [dm6]	T	C	3.011e^-4	0.586	UPSTREAM CheB53a INTERGENIC
2L	4724462	2L_4724462_SNP [dm3] 2L_4724462_SNP [dm6]	T	G	3.012e^-4	0.586	INTERGENIC
2L	4099558	2L_4099558_SNP [dm3] 2L_4099558_SNP [dm6]	G	A	3.016e^-4	0.586	SYNONYMOUS_CODING ed	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	17804994	X_17804994_SNP [dm3] X_17910961_SNP [dm6]	G	A	3.016e^-4	0.586	UTR_3_PRIME Vps4 UPSTREAM CG6847 DOWNSTREAM Vps4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10963699	X_10963699_SNP [dm3] X_11069666_SNP [dm6]	G	A	3.018e^-4	0.586	INTERGENIC
2R	7144335	2R_7144335_SNP [dm3] 2R_11256830_SNP [dm6]	A	T	3.022e^-4	0.586	DOWNSTREAM Cpr47Eb INTRON CG13223	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22198513	3R_22198513_SNP [dm3] 3R_26372791_SNP [dm6]	G	A	3.024e^-4	0.586	INTERGENIC
3R	11786983	3R_11786983_SNP [dm3] 3R_15961261_SNP [dm6]	C	T	3.026e^-4	0.586	UTR_3_PRIME Sap47 DOWNSTREAM Sap47 & 1 other
3L	5890578	3L_5890578_SNP [dm3] 3L_5897478_SNP [dm6]	T	A	3.026e^-4	0.586	UPSTREAM CG5592 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	25946078	3R_25946078_SNP [dm3] 3R_30120356_SNP [dm6]	A	T	3.026e^-4	0.586	SYNONYMOUS_CODING sima UTR_3_PRIME sima	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17365748	2R_17365748_SNP [dm3] 2R_21478243_SNP [dm6]	G	A	3.030e^-4	0.586	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9171444	2L_9171444_SNP [dm3] 2L_9171444_SNP [dm6]	T	G	3.033e^-4	0.586	INTRON tai
2L	12838376	2L_12838376_SNP [dm3] 2L_12838376_SNP [dm6]	C	A	3.043e^-4	0.586	INTERGENIC
2R	15361976	2R_15361976_SNP [dm3] 2R_19474471_SNP [dm6]	C	T	3.046e^-4	0.586	INTRON par-1
3R	12059685	3R_12059685_INS [dm3] 3R_16233963_INS [dm6]	T	AA	3.048e^-4	0.586	INTRON tara
3R	15255883	3R_15255883_INS [dm3] 3R_19430161_INS [dm6]	A	AA	3.048e^-4	0.586	INTRON CG31221
2R	15048239	2R_15048239_SNP [dm3] 2R_19160734_SNP [dm6]	G	A	3.058e^-4	0.586	SYNONYMOUS_CODING ena
2R	9148876	2R_9148876_SNP [dm3] 2R_13261371_SNP [dm6]	C	T	3.063e^-4	0.586	INTRON CG42319
X	9434418	X_9434418_SNP [dm3] X_9540385_SNP [dm6]	G	A	3.066e^-4	0.586	INTRON CG32700
3L	8415792	3L_8415792_SNP [dm3] 3L_8422692_SNP [dm6]	T	C	3.067e^-4	0.586	UPSTREAM CG32354 INTERGENIC
3R	7109623	3R_7109623_SNP [dm3] 3R_11283901_SNP [dm6]	A	G	3.070e^-4	0.586	INTRON CR31386
3R	19032510	3R_19032510_SNP [dm3] 3R_23206788_SNP [dm6]	G	A	3.071e^-4	0.586	INTRON cnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
X	16878172	X_16878172_SNP [dm3] X_16984139_SNP [dm6]	A	T	3.072e^-4	0.586	INTRON CG45002
3L	909737	3L_909737_DEL [dm3] 3L_909737_DEL [dm6]	AGGA	A	3.085e^-4	0.586	CODON_DELETION nerfin-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27096573	3R_27096573_SNP [dm3] 3R_31270851_SNP [dm6]	A	C	3.085e^-4	0.586	INTERGENIC
3R	15772131	3R_15772131_SNP [dm3] 3R_19946409_SNP [dm6]	A	G	3.088e^-4	0.586	INTRON Hs6st
X	13127998	X_13127998_SNP [dm3] X_13233965_SNP [dm6]	G	T	3.089e^-4	0.586	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
2R	6446830	2R_6446830_SNP [dm3] 2R_10559325_SNP [dm6]	A	T	3.089e^-4	0.586	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	18366445	2L_18366445_SNP [dm3] 2L_18366445_SNP [dm6]	C	T	3.091e^-4	0.586	INTRON Fas3
2L	3041828	2L_3041828_SNP [dm3] 2L_3041828_SNP [dm6]	A	G	3.099e^-4	0.586	UTR_3_PRIME CG17221 UPSTREAM CG17261 DOWNSTREAM CG17221
2R	11907048	2R_11907048_SNP [dm3] 2R_16019543_SNP [dm6]	T	C	3.104e^-4	0.586	INTRON CG8399
X	6637739	X_6637739_SNP [dm3] X_6743706_SNP [dm6]	C	T	3.105e^-4	0.586	UPSTREAM snoRNA:Psi28S-3436a & 2 others DOWNSTREAM tRNA:CR32740 INTRON RpL17 EXON snoRNA:Psi28S-1232	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
X	19057259	X_19057259_SNP [dm3] X_19163226_SNP [dm6]	G	A	3.107e^-4	0.586	INTRON RhoGAP18B
3R	4892706	3R_4892706_SNP [dm3] 3R_9066984_SNP [dm6]	A	G	3.108e^-4	0.586	UTR_3_PRIME pum DOWNSTREAM Ada & 1 other
X	6640123	X_6640123_SNP [dm3] X_6746090_SNP [dm6]	G	A	3.109e^-4	0.586	DOWNSTREAM CR44964 EXON CR44895
2L	3347601	2L_3347601_INS [dm3] 2L_3347601_INS [dm6]	T	TT	3.109e^-4	0.586	INTRON E23
3L	18862899	3L_18862899_SNP [dm3] 3L_18869799_SNP [dm6]	C	A	3.110e^-4	0.586	SYNONYMOUS_CODING CG6852 UPSTREAM Blos3 DOWNSTREAM Dysb & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	332515	2L_332515_SNP [dm3] 2L_332515_SNP [dm6]	G	A	3.113e^-4	0.586	UPSTREAM CG31921 INTRON Plc21C	TF binding site mE1_TFBS_cad
3L	17145867	3L_17145867_SNP [dm3] 3L_17152767_SNP [dm6]	T	A	3.113e^-4	0.586	INTRON Rbp6
3L	1106598	3L_1106598_SNP [dm3] 3L_1106598_SNP [dm6]	A	C	3.122e^-4	0.587	INTERGENIC
3L	4106798	3L_4106798_SNP [dm3] 3L_4106798_SNP [dm6]	C	A	3.125e^-4	0.587	UTR_3_PRIME Fit1 DOWNSTREAM CR45670 & 1 other
2L	4076077	2L_4076077_SNP [dm3] 2L_4076077_SNP [dm6]	A	T	3.127e^-4	0.587	UPSTREAM CR44984 INTRON ed
2R	17800087	2R_17800087_SNP [dm3] 2R_21912582_SNP [dm6]	C	T	3.129e^-4	0.587	INTRON Fili

Missing results

By genomic position
Variant impact
Gene name

mn_Viability_Lead phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results