DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.473e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.08718
In_3R_K	0.06738

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	5.93	0.0516

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2181 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	16739791	2R_16739791_SNP [dm3] 2R_20852286_SNP [dm6]	C	T	2.675e^-7	0.298	UPSTREAM CG9993 INTERGENIC
2R	18201315	2R_18201315_SNP [dm3] 2R_22313810_SNP [dm6]	C	A	3.765e^-7	0.298	INTRON CR44758
X	2615293	X_2615293_SNP [dm3] X_2721260_SNP [dm6]	C	G	7.639e^-7	0.298	NON_SYNONYMOUS_CODING fs_1_Yb UPSTREAM CG2701	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	15365665	3R_15365665_SNP [dm3] 3R_19539943_SNP [dm6]	C	A	9.241e^-7	0.298	INTRON Dys
2R	18201316	2R_18201316_SNP [dm3] 2R_22313811_SNP [dm6]	C	A	1.072e^-6	0.298	INTRON CR44758
2L	10708136	2L_10708136_SNP [dm3] 2L_10708136_SNP [dm6]	T	A	1.074e^-6	0.298	INTRON Lip2
3R	15100098	3R_15100098_SNP [dm3] 3R_19274376_SNP [dm6]	A	C	1.112e^-6	0.298	INTERGENIC
X	14782457	X_14782457_SNP [dm3] X_14888424_SNP [dm6]	A	G	1.406e^-6	0.33	SYNONYMOUS_CODING CG9514 INTRON Flo2
X	19887172	X_19887172_SNP [dm3] X_19993139_SNP [dm6]	A	T	1.592e^-6	0.332	INTERGENIC
X	15669386	X_15669386_SNP [dm3] X_15775353_SNP [dm6]	C	G	1.982e^-6	0.372	SYNONYMOUS_CODING CG43672
2L	10710754	2L_10710754_SNP [dm3] 2L_10710754_SNP [dm6]	G	A	2.300e^-6	0.392	DOWNSTREAM CR44407 INTERGENIC
2R	4589494	2R_4589494_SNP [dm3] 2R_8701989_SNP [dm6]	C	T	2.800e^-6	0.438	SYNONYMOUS_CODING CG12376 UPSTREAM CG12376 & 1 other
X	15669389	X_15669389_SNP [dm3] X_15775356_SNP [dm6]	G	T	4.066e^-6	0.478	NON_SYNONYMOUS_CODING CG43672
3L	7599798	3L_7599798_SNP [dm3] 3L_7606698_SNP [dm6]	G	A	4.236e^-6	0.478	INTRON CG33275
2L	11427861	2L_11427861_SNP [dm3] 2L_11427861_SNP [dm6]	C	G	4.354e^-6	0.478	INTERGENIC
2R	11170575	2R_11170575_SNP [dm3] 2R_15283070_SNP [dm6]	A	G	4.360e^-6	0.478	INTRON Trpm
2L	6749997	2L_6749997_SNP [dm3] 2L_6749997_SNP [dm6]	T	G	4.430e^-6	0.478	INTRON CG11221
2R	9164356	2R_9164356_SNP [dm3] 2R_13276851_SNP [dm6]	T	G	4.590e^-6	0.478	INTRON Dh31-R
2L	13995575	2L_13995575_SNP [dm3] 2L_13995575_SNP [dm6]	C	A	4.979e^-6	0.488	INTRON rk
X	14919584	X_14919584_SNP [dm3] X_15025551_SNP [dm6]	C	T	5.207e^-6	0.488	INTRON hiw & 1 other
3R	24540380	3R_24540380_SNP [dm3] 3R_28714658_SNP [dm6]	T	C	5.589e^-6	0.49	INTRON htt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	14919600	X_14919600_SNP [dm3] X_15025567_SNP [dm6]	T	G	5.742e^-6	0.49	INTRON hiw & 1 other
2R	11170603	2R_11170603_SNP [dm3] 2R_15283098_SNP [dm6]	T	A	7.204e^-6	0.517	INTRON Trpm
X	14919610	X_14919610_SNP [dm3] X_15025577_SNP [dm6]	A	T	7.926e^-6	0.517	INTRON hiw & 1 other
2L	11508472	2L_11508472_SNP [dm3] 2L_11508472_SNP [dm6]	T	C	8.214e^-6	0.517	UTR_3_PRIME spz4 & 1 other DOWNSTREAM CG6509
3R	15369049	3R_15369049_SNP [dm3] 3R_19543327_SNP [dm6]	G	A	8.918e^-6	0.517	INTRON Dys
3L	18698614	3L_18698614_SNP [dm3] 3L_18705514_SNP [dm6]	G	T	8.978e^-6	0.517	INTERGENIC
2L	13988913	2L_13988913_SNP [dm3] 2L_13988913_SNP [dm6]	T	C	9.082e^-6	0.517	INTRON rk
X	14909392	X_14909392_DEL [dm3] X_15015359_DEL [dm6]	GTTA	G	9.126e^-6	0.517	INTRON hiw	TF binding site mE1_TFBS_chinmo
3L	7599800	3L_7599800_SNP [dm3] 3L_7606700_SNP [dm6]	A	G	9.292e^-6	0.517	INTRON CG33275
X	14913337	X_14913337_DEL [dm3] X_15019304_DEL [dm6]	TATTAGAAAT	T	9.330e^-6	0.517	INTRON hiw	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14919621	X_14919621_SNP [dm3] X_15025588_SNP [dm6]	C	T	9.415e^-6	0.517	INTRON hiw & 1 other
2L	10710709	2L_10710709_SNP [dm3] 2L_10710709_SNP [dm6]	A	G	9.538e^-6	0.517	EXON CR44407
2L	10711939	2L_10711939_SNP [dm3] 2L_10711939_SNP [dm6]	G	C	1.003e^-5	0.517	INTERGENIC
2L	10711791	2L_10711791_DEL [dm3] 2L_10711791_DEL [dm6]	TA	T	1.015e^-5	0.517	INTERGENIC
2R	3391066	2R_3391066_SNP [dm3] 2R_7503561_SNP [dm6]	A	T	1.025e^-5	0.517	INTRON didum	TF binding site mE1_TFBS_cad
2L	19301395	2L_19301395_SNP [dm3] 2L_19301395_SNP [dm6]	C	T	1.030e^-5	0.517	INTRON CG10750
2R	8485998	2R_8485998_SNP [dm3] 2R_12598493_SNP [dm6]	A	T	1.059e^-5	0.517	INTRON Amph
X	14623873	X_14623873_SNP [dm3] X_14729840_SNP [dm6]	G	C	1.075e^-5	0.517	INTRON NetB
2L	10710741	2L_10710741_SNP [dm3] 2L_10710741_SNP [dm6]	A	T	1.109e^-5	0.52	DOWNSTREAM CR44407 INTERGENIC
2L	10711784	2L_10711784_SNP [dm3] 2L_10711784_SNP [dm6]	G	A	1.144e^-5	0.523	INTERGENIC
2R	12196035	2R_12196035_SNP [dm3] 2R_16308530_SNP [dm6]	A	G	1.255e^-5	0.541	UTR_5_PRIME Nox UPSTREAM Nox	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14661371	X_14661371_SNP [dm3] X_14767338_SNP [dm6]	G	T	1.292e^-5	0.541	INTERGENIC
X	14919594	X_14919594_SNP [dm3] X_15025561_SNP [dm6]	T	G	1.325e^-5	0.541	INTRON hiw & 1 other
2L	3672277	2L_3672277_SNP [dm3] 2L_3672277_SNP [dm6]	T	G	1.335e^-5	0.541	INTRON CG34340
2L	10659215	2L_10659215_SNP [dm3] 2L_10659215_SNP [dm6]	T	C	1.393e^-5	0.541	DOWNSTREAM CG45690 INTERGENIC
X	14661376	X_14661376_SNP [dm3] X_14767343_SNP [dm6]	C	T	1.458e^-5	0.541	INTERGENIC
2R	13364759	2R_13364759_SNP [dm3] 2R_17477254_SNP [dm6]	T	C	1.482e^-5	0.541	UPSTREAM CG6520 & 1 other DOWNSTREAM CG43110 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
X	14919572	X_14919572_SNP [dm3] X_15025539_SNP [dm6]	G	A	1.503e^-5	0.541	INTRON hiw & 1 other
2L	11361298	2L_11361298_SNP [dm3] 2L_11361298_SNP [dm6]	T	G	1.509e^-5	0.541	INTRON salr	regulatory region REDfly_CRMs
X	2615520	X_2615520_SNP [dm3] X_2721487_SNP [dm6]	T	A	1.521e^-5	0.541	NON_SYNONYMOUS_CODING fs_1_Yb	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	10710319	2L_10710319_DEL [dm3] 2L_10710319_DEL [dm6]	CC	C	1.535e^-5	0.541	UPSTREAM Lip2 EXON CR44407
X	4425768	X_4425768_SNP [dm3] X_4531735_SNP [dm6]	C	T	1.541e^-5	0.541	SYNONYMOUS_CODING CG3556 INTRON CR32773
2L	5786230	2L_5786230_SNP [dm3] 2L_5786230_SNP [dm6]	G	T	1.558e^-5	0.541	INTRON CG9171	TF binding site BDTNP1_TFBS_twi
X	14919603	X_14919603_SNP [dm3] X_15025570_SNP [dm6]	A	T	1.640e^-5	0.559	INTRON hiw & 1 other
2L	8667784	2L_8667784_SNP [dm3] 2L_8667784_SNP [dm6]	A	G	1.681e^-5	0.561	UTR_3_PRIME Sema-1a DOWNSTREAM Sema-1a
X	14919656	X_14919656_SNP [dm3] X_15025623_SNP [dm6]	C	T	1.797e^-5	0.561	INTRON hiw & 1 other
3L	10809405	3L_10809405_SNP [dm3] 3L_10816305_SNP [dm6]	T	G	1.811e^-5	0.561	UPSTREAM CR45247 DOWNSTREAM CG42831 INTERGENIC
3R	24540387	3R_24540387_SNP [dm3] 3R_28714665_SNP [dm6]	C	T	1.813e^-5	0.561	SPLICE_SITE_REGION htt INTRON htt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	19203960	X_19203960_SNP [dm3] X_19309927_SNP [dm6]	T	A	1.842e^-5	0.561	DOWNSTREAM out INTERGENIC
X	7759341	X_7759341_SNP [dm3] X_7865308_SNP [dm6]	A	G	1.851e^-5	0.561	SYNONYMOUS_CODING Ir7b
2R	18205033	2R_18205033_SNP [dm3] 2R_22317528_SNP [dm6]	T	C	1.864e^-5	0.561	UPSTREAM Gp150 DOWNSTREAM CR44758 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	12611541	3L_12611541_SNP [dm3] 3L_12618441_SNP [dm6]	A	G	1.923e^-5	0.561	SYNONYMOUS_CODING caup
2R	18200536	2R_18200536_SNP [dm3] 2R_22313031_SNP [dm6]	C	A	1.955e^-5	0.561	INTRON CR44758
3R	18405727	3R_18405727_SNP [dm3] 3R_22580005_SNP [dm6]	A	T	1.958e^-5	0.561	UTR_3_PRIME CG33110 UPSTREAM CSN6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	7921226	2R_7921226_DEL [dm3] 2R_12033721_DEL [dm6]	AA	A	1.974e^-5	0.561	UTR_3_PRIME pds5 UPSTREAM CG8321	TF binding site BDTNP1_TFBS_dl
X	4808093	X_4808093_SNP [dm3] X_4914060_SNP [dm6]	A	G	2.033e^-5	0.569	SYNONYMOUS_CODING CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15669374	X_15669374_SNP [dm3] X_15775341_SNP [dm6]	T	G	2.118e^-5	0.571	NON_SYNONYMOUS_CODING CG43672
X	14919650	X_14919650_SNP [dm3] X_15025617_SNP [dm6]	G	C	2.136e^-5	0.571	INTRON hiw & 1 other
X	13813432	X_13813432_SNP [dm3] X_13919399_SNP [dm6]	A	G	2.141e^-5	0.571	INTRON mamo
2L	10906341	2L_10906341_SNP [dm3] 2L_10906341_SNP [dm6]	C	A	2.166e^-5	0.571	UTR_3_PRIME CG7309
2L	11508819	2L_11508819_SNP [dm3] 2L_11508819_SNP [dm6]	T	C	2.193e^-5	0.571	UTR_3_PRIME CG6509 DOWNSTREAM spz4
3L	10300678	3L_10300678_SNP [dm3] 3L_10307578_SNP [dm6]	G	A	2.301e^-5	0.591	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6651318	3L_6651318_SNP [dm3] 3L_6658218_SNP [dm6]	A	G	2.396e^-5	0.601	INTERGENIC
3L	7599792	3L_7599792_SNP [dm3] 3L_7606692_SNP [dm6]	T	G	2.404e^-5	0.601	INTRON CG33275
2L	529575	2L_529575_SNP [dm3] 2L_529575_SNP [dm6]	A	T	2.433e^-5	0.601	INTRON ush	regulatory region REDfly_CRMs
2R	11170605	2R_11170605_DEL [dm3] 2R_15283100_DEL [dm6]	TTATAA	GGGC	2.635e^-5	0.634	INTRON Trpm
3R	21994263	3R_21994263_SNP [dm3] 3R_26168541_SNP [dm6]	A	C	2.636e^-5	0.634	INTERGENIC
2L	8809114	2L_8809114_SNP [dm3] 2L_8809114_SNP [dm6]	G	C	2.782e^-5	0.647	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	2615401	X_2615401_SNP [dm3] X_2721368_SNP [dm6]	G	A	2.799e^-5	0.647	NON_SYNONYMOUS_CODING fs_1_Yb	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	19301391	2L_19301391_SNP [dm3] 2L_19301391_SNP [dm6]	C	T	2.922e^-5	0.647	INTRON CG10750
2L	4133243	2L_4133243_SNP [dm3] 2L_4133243_SNP [dm6]	T	C	2.938e^-5	0.647	INTERGENIC
2L	4133244	2L_4133244_SNP [dm3] 2L_4133244_SNP [dm6]	G	A	2.938e^-5	0.647	INTERGENIC
2L	8550085	2L_8550085_SNP [dm3] 2L_8550085_SNP [dm6]	T	C	2.949e^-5	0.647	INTRON Sema-1a
2R	16735454	2R_16735454_SNP [dm3] 2R_20847949_SNP [dm6]	A	T	2.963e^-5	0.647	DOWNSTREAM CG17999 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	15669425	X_15669425_SNP [dm3] X_15775392_SNP [dm6]	G	A	2.968e^-5	0.647	SYNONYMOUS_CODING CG43672
X	15446858	X_15446858_SNP [dm3] X_15552825_SNP [dm6]	C	G	3.031e^-5	0.648	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6956393	3R_6956393_SNP [dm3] 3R_11130671_SNP [dm6]	T	C	3.132e^-5	0.648	INTERGENIC
2L	11356443	2L_11356443_SNP [dm3] 2L_11356443_SNP [dm6]	T	G	3.138e^-5	0.648	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	14919667	X_14919667_SNP [dm3] X_15025634_SNP [dm6]	C	T	3.142e^-5	0.648	INTRON hiw & 1 other
3L	2727408	3L_2727408_SNP [dm3] 3L_2727408_SNP [dm6]	C	T	3.143e^-5	0.648	INTRON Mrtf
2L	10711827	2L_10711827_SNP [dm3] 2L_10711827_SNP [dm6]	T	C	3.183e^-5	0.649	INTERGENIC
2R	5095554	2R_5095554_DEL [dm3] 2R_9208049_DEL [dm6]	GG	G	3.247e^-5	0.649	UPSTREAM CG8027 INTRON VhaAC45	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	15446239	X_15446239_INS [dm3] X_15552206_INS [dm6]	T	TTAATTGAGCATC...	3.284e^-5	0.649	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	10712519	2L_10712519_SNP [dm3] 2L_10712519_SNP [dm6]	G	C	3.285e^-5	0.649	INTERGENIC
2R	14572112	2R_14572112_SNP [dm3] 2R_18684607_SNP [dm6]	T	C	3.321e^-5	0.649	NON_SYNONYMOUS_CODING CG44433 UPSTREAM CG44434 & 1 other
2R	15686404	2R_15686404_SNP [dm3] 2R_19798899_SNP [dm6]	C	T	3.396e^-5	0.657	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15369087	3R_15369087_SNP [dm3] 3R_19543365_SNP [dm6]	A	G	3.500e^-5	0.67	INTRON Dys
X	2615506	X_2615506_SNP [dm3] X_2721473_SNP [dm6]	C	T	3.667e^-5	0.695	NON_SYNONYMOUS_CODING fs_1_Yb	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	6749564	2L_6749564_INS [dm3] 2L_6749564_INS [dm6]	T	TA	3.788e^-5	0.711	INTRON CG11221

Showing 1 to 100 of 1,000 entries

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GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.412e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.08807

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	6.4895	0.039

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2036 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	13988913	2L_13988913_SNP [dm3] 2L_13988913_SNP [dm6]	T	C	1.956e^-6	0.603	INTRON rk
2R	14572112	2R_14572112_SNP [dm3] 2R_18684607_SNP [dm6]	T	C	2.327e^-6	0.603	NON_SYNONYMOUS_CODING CG44433 UPSTREAM CG44434 & 1 other
2L	8324477	2L_8324477_SNP [dm3] 2L_8324477_SNP [dm6]	C	A	2.340e^-6	0.603	INTRON CG7781
2L	10712519	2L_10712519_SNP [dm3] 2L_10712519_SNP [dm6]	G	C	2.429e^-6	0.603	INTERGENIC
2L	8809114	2L_8809114_SNP [dm3] 2L_8809114_SNP [dm6]	G	C	3.071e^-6	0.603	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	11427861	2L_11427861_SNP [dm3] 2L_11427861_SNP [dm6]	C	G	3.287e^-6	0.603	INTERGENIC
2R	16739791	2R_16739791_SNP [dm3] 2R_20852286_SNP [dm6]	C	T	3.433e^-6	0.603	UPSTREAM CG9993 INTERGENIC
2L	11361298	2L_11361298_SNP [dm3] 2L_11361298_SNP [dm6]	T	G	3.857e^-6	0.603	INTRON salr	regulatory region REDfly_CRMs
2R	4589494	2R_4589494_SNP [dm3] 2R_8701989_SNP [dm6]	C	T	4.368e^-6	0.603	SYNONYMOUS_CODING CG12376 UPSTREAM CG12376 & 1 other
3L	15770547	3L_15770547_SNP [dm3] 3L_15777447_SNP [dm6]	G	T	4.559e^-6	0.603	INTERGENIC
2R	19400339	2R_19400339_SNP [dm3] 2R_23512816_SNP [dm6]	G	T	4.673e^-6	0.603	UPSTREAM CG3906 INTERGENIC
2L	7673681	2L_7673681_SNP [dm3] 2L_7673681_SNP [dm6]	C	A	5.388e^-6	0.603	INTRON Slob & 1 other	TF binding site mE1_TFBS_sens
2R	18201315	2R_18201315_SNP [dm3] 2R_22313810_SNP [dm6]	C	A	5.708e^-6	0.603	INTRON CR44758
2L	7673680	2L_7673680_SNP [dm3] 2L_7673680_SNP [dm6]	C	A	6.052e^-6	0.603	INTRON Slob & 1 other	TF binding site mE1_TFBS_sens
2L	8365885	2L_8365885_SNP [dm3] 2L_8365885_SNP [dm6]	G	A	6.157e^-6	0.603	UPSTREAM Pp2A-29B DOWNSTREAM CSN8 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
X	7759341	X_7759341_SNP [dm3] X_7865308_SNP [dm6]	A	G	6.659e^-6	0.603	SYNONYMOUS_CODING Ir7b
X	19887172	X_19887172_SNP [dm3] X_19993139_SNP [dm6]	A	T	7.532e^-6	0.603	INTERGENIC
2L	13344168	2L_13344168_SNP [dm3] 2L_13344168_SNP [dm6]	T	C	8.033e^-6	0.603	INTERGENIC
2L	8550085	2L_8550085_SNP [dm3] 2L_8550085_SNP [dm6]	T	C	8.216e^-6	0.603	INTRON Sema-1a
3R	21448068	3R_21448068_SNP [dm3] 3R_25622346_SNP [dm6]	T	C	9.290e^-6	0.603	INTRON Npl4	TF binding site mE1_TFBS_sens
3L	12316404	3L_12316404_SNP [dm3] 3L_12323304_SNP [dm6]	T	C	1.007e^-5	0.603	INTERGENIC
2L	12547485	2L_12547485_SNP [dm3] 2L_12547485_SNP [dm6]	T	A	1.025e^-5	0.603	UPSTREAM bun INTERGENIC	TF binding site mE1_TFBS_HSA
3L	7262060	3L_7262060_SNP [dm3] 3L_7268960_SNP [dm6]	G	A	1.065e^-5	0.603	UTR_3_PRIME unc-13-4A
3L	867362	3L_867362_SNP [dm3] 3L_867362_SNP [dm6]	A	G	1.082e^-5	0.603	INTRON CG12502
2R	3391066	2R_3391066_SNP [dm3] 2R_7503561_SNP [dm6]	A	T	1.133e^-5	0.603	INTRON didum	TF binding site mE1_TFBS_cad
2L	8005476	2L_8005476_SNP [dm3] 2L_8005476_SNP [dm6]	A	G	1.158e^-5	0.603	SYNONYMOUS_CODING Spn28Dc	TF binding site mE1_TFBS_cad
2L	11361353	2L_11361353_SNP [dm3] 2L_11361353_SNP [dm6]	G	A	1.205e^-5	0.603	INTRON salr	regulatory region REDfly_CRMs
X	15086054	X_15086054_SNP [dm3] X_15192021_SNP [dm6]	T	A	1.212e^-5	0.603	INTERGENIC
2L	8324431	2L_8324431_SNP [dm3] 2L_8324431_SNP [dm6]	T	A	1.221e^-5	0.603	INTRON CG7781
2L	8940027	2L_8940027_SNP [dm3] 2L_8940027_SNP [dm6]	G	A	1.255e^-5	0.603	SYNONYMOUS_CODING CG9510 DOWNSTREAM Tsp29Fb
3R	15635224	3R_15635224_SNP [dm3] 3R_19809502_SNP [dm6]	T	G	1.316e^-5	0.603	INTRON bnl
X	15084724	X_15084724_SNP [dm3] X_15190691_SNP [dm6]	C	A	1.334e^-5	0.603	DOWNSTREAM CG43737 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	15086636	X_15086636_SNP [dm3] X_15192603_SNP [dm6]	A	T	1.334e^-5	0.603	INTERGENIC
X	15086887	X_15086887_SNP [dm3] X_15192854_SNP [dm6]	C	T	1.334e^-5	0.603	INTERGENIC
X	14623873	X_14623873_SNP [dm3] X_14729840_SNP [dm6]	G	C	1.335e^-5	0.603	INTRON NetB
2L	3672346	2L_3672346_SNP [dm3] 2L_3672346_SNP [dm6]	A	C	1.358e^-5	0.603	INTRON CG34340
3L	10809405	3L_10809405_SNP [dm3] 3L_10816305_SNP [dm6]	T	G	1.388e^-5	0.603	UPSTREAM CR45247 DOWNSTREAM CG42831 INTERGENIC
2R	18201316	2R_18201316_SNP [dm3] 2R_22313811_SNP [dm6]	C	A	1.429e^-5	0.603	INTRON CR44758
2L	19301395	2L_19301395_SNP [dm3] 2L_19301395_SNP [dm6]	C	T	1.433e^-5	0.603	INTRON CG10750
2L	8940123	2L_8940123_SNP [dm3] 2L_8940123_SNP [dm6]	G	A	1.452e^-5	0.603	SYNONYMOUS_CODING CG9510 DOWNSTREAM Tsp29Fb
X	15086253	X_15086253_SNP [dm3] X_15192220_SNP [dm6]	T	C	1.523e^-5	0.603	INTERGENIC
2L	3672277	2L_3672277_SNP [dm3] 2L_3672277_SNP [dm6]	T	G	1.543e^-5	0.603	INTRON CG34340
2L	8254705	2L_8254705_SNP [dm3] 2L_8254705_SNP [dm6]	G	A	1.563e^-5	0.603	INTRON CG8086	TF binding site BDTNP1_TFBS_twi
X	14919584	X_14919584_SNP [dm3] X_15025551_SNP [dm6]	C	T	1.602e^-5	0.603	INTRON hiw & 1 other
2R	851779	2R_851779_INS [dm3] 2R_4964274_INS [dm6]	T	TTTTCTGCCTCTAACAATT...	1.609e^-5	0.603	INTRON Ir41a	transposable element FlyBase
X	2615293	X_2615293_SNP [dm3] X_2721260_SNP [dm6]	C	G	1.669e^-5	0.603	NON_SYNONYMOUS_CODING fs_1_Yb UPSTREAM CG2701	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	16363232	2L_16363232_INS [dm3] 2L_16363232_INS [dm6]	A	AA	1.680e^-5	0.603	INTERGENIC
3R	18405727	3R_18405727_SNP [dm3] 3R_22580005_SNP [dm6]	A	T	1.683e^-5	0.603	UTR_3_PRIME CG33110 UPSTREAM CSN6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	7797077	2L_7797077_SNP [dm3] 2L_7797077_SNP [dm6]	A	T	1.697e^-5	0.603	SYNONYMOUS_CODING Herp DOWNSTREAM CR44825	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11508819	2L_11508819_SNP [dm3] 2L_11508819_SNP [dm6]	T	C	1.820e^-5	0.603	UTR_3_PRIME CG6509 DOWNSTREAM spz4
2L	10708136	2L_10708136_SNP [dm3] 2L_10708136_SNP [dm6]	T	A	1.899e^-5	0.603	INTRON Lip2
X	15086191	X_15086191_SNP [dm3] X_15192158_SNP [dm6]	T	G	1.912e^-5	0.603	INTERGENIC
2L	8366015	2L_8366015_SNP [dm3] 2L_8366015_SNP [dm6]	C	T	1.947e^-5	0.603	UPSTREAM Pp2A-29B DOWNSTREAM CSN8 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	8667784	2L_8667784_SNP [dm3] 2L_8667784_SNP [dm6]	A	G	1.988e^-5	0.603	UTR_3_PRIME Sema-1a DOWNSTREAM Sema-1a
2L	13428832	2L_13428832_SNP [dm3] 2L_13428832_SNP [dm6]	G	T	1.990e^-5	0.603	INTRON CG42784
2R	20021813	2R_20021813_SNP [dm3] 2R_24134290_SNP [dm6]	C	A	2.004e^-5	0.603	UPSTREAM tamo DOWNSTREAM CG4065 INTRON Zfrp8	TF binding site BDTNP1_TFBS_dl
2L	8367337	2L_8367337_SNP [dm3] 2L_8367337_SNP [dm6]	C	T	2.124e^-5	0.603	SYNONYMOUS_CODING Pp2A-29B	TF binding site mE1_TFBS_cad
3R	24540380	3R_24540380_SNP [dm3] 3R_28714658_SNP [dm6]	T	C	2.169e^-5	0.603	INTRON htt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	27455511	3R_27455511_SNP [dm3] 3R_31629789_SNP [dm6]	T	C	2.182e^-5	0.603	INTRON kek6
X	15509930	X_15509930_DEL [dm3] X_15615897_DEL [dm6]	TTAATTGGCTGCGTGCGAGC...	C	2.189e^-5	0.603	INTRON sog
X	14919600	X_14919600_SNP [dm3] X_15025567_SNP [dm6]	T	G	2.194e^-5	0.603	INTRON hiw & 1 other
2R	9164356	2R_9164356_SNP [dm3] 2R_13276851_SNP [dm6]	T	G	2.197e^-5	0.603	INTRON Dh31-R
2L	7797329	2L_7797329_SNP [dm3] 2L_7797329_SNP [dm6]	A	T	2.237e^-5	0.603	INTRON Herp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	14913337	X_14913337_DEL [dm3] X_15019304_DEL [dm6]	TATTAGAAAT	T	2.242e^-5	0.603	INTRON hiw	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18463255	2L_18463255_DEL [dm3] 2L_18463255_DEL [dm6]	TC	T	2.247e^-5	0.603	INTRON let-7-C
2R	16743179	2R_16743179_SNP [dm3] 2R_20855674_SNP [dm6]	T	C	2.300e^-5	0.603	INTERGENIC
X	15509970	X_15509970_SNP [dm3] X_15615937_SNP [dm6]	G	C	2.304e^-5	0.603	INTRON sog
2R	3363055	2R_3363055_SNP [dm3] 2R_7475550_SNP [dm6]	A	G	2.320e^-5	0.603	UTR_5_PRIME Aldh-III UPSTREAM Aldh-III
2L	10906341	2L_10906341_SNP [dm3] 2L_10906341_SNP [dm6]	C	A	2.332e^-5	0.603	UTR_3_PRIME CG7309
2L	10711791	2L_10711791_DEL [dm3] 2L_10711791_DEL [dm6]	TA	T	2.355e^-5	0.603	INTERGENIC
X	15509967	X_15509967_DEL [dm3] X_15615934_DEL [dm6]	AA	A	2.369e^-5	0.603	INTRON sog
2L	16362973	2L_16362973_SNP [dm3] 2L_16362973_SNP [dm6]	G	T	2.396e^-5	0.603	INTERGENIC
2R	12047514	2R_12047514_SNP [dm3] 2R_16160009_SNP [dm6]	T	C	2.396e^-5	0.603	INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19304527	2L_19304527_SNP [dm3] 2L_19304527_SNP [dm6]	G	A	2.434e^-5	0.603	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15024544	X_15024544_SNP [dm3] X_15130511_SNP [dm6]	G	T	2.467e^-5	0.603	INTRON drd
2L	11988022	2L_11988022_SNP [dm3] 2L_11988022_SNP [dm6]	C	A	2.469e^-5	0.603	UTR_5_PRIME CG6686 UPSTREAM CG34163 DOWNSTREAM zuc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6610101	2L_6610101_SNP [dm3] 2L_6610101_SNP [dm6]	A	C	2.476e^-5	0.603	UPSTREAM CG11050 INTERGENIC	TF binding site mE1_TFBS_Kr
2L	10659215	2L_10659215_SNP [dm3] 2L_10659215_SNP [dm6]	T	C	2.808e^-5	0.657	DOWNSTREAM CG45690 INTERGENIC
2L	16166888	2L_16166888_INS [dm3] 2L_16166888_INS [dm6]	C	CC	2.811e^-5	0.657	INTRON Ca-alpha1D	TF binding site mE1_TFBS_HSA
2L	11383699	2L_11383699_SNP [dm3] 2L_11383699_SNP [dm6]	G	A	2.837e^-5	0.657	INTERGENIC	regulatory region REDfly_CRMs
X	14919610	X_14919610_SNP [dm3] X_15025577_SNP [dm6]	A	T	2.936e^-5	0.657	INTRON hiw & 1 other
2R	1877446	2R_1877446_SNP [dm3] 2R_5989941_SNP [dm6]	T	A	2.972e^-5	0.657	INTRON Src42A
2R	3391046	2R_3391046_SNP [dm3] 2R_7503541_SNP [dm6]	A	G	2.984e^-5	0.657	INTRON didum	TF binding site mE1_TFBS_cad
2L	10711939	2L_10711939_SNP [dm3] 2L_10711939_SNP [dm6]	G	C	3.088e^-5	0.657	INTERGENIC
2L	4133243	2L_4133243_SNP [dm3] 2L_4133243_SNP [dm6]	T	C	3.109e^-5	0.657	INTERGENIC
2L	4133244	2L_4133244_SNP [dm3] 2L_4133244_SNP [dm6]	G	A	3.109e^-5	0.657	INTERGENIC
X	14661371	X_14661371_SNP [dm3] X_14767338_SNP [dm6]	G	T	3.142e^-5	0.657	INTERGENIC
2R	1916948	2R_1916948_SNP [dm3] 2R_6029443_SNP [dm6]	G	A	3.164e^-5	0.657	SYNONYMOUS_CODING SCAP
2L	3626863	2L_3626863_SNP [dm3] 2L_3626863_SNP [dm6]	G	C	3.185e^-5	0.657	SYNONYMOUS_CODING for INTRON for	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9406278	2L_9406278_SNP [dm3] 2L_9406278_SNP [dm6]	G	A	3.193e^-5	0.657	INTRON Shawl
X	15669386	X_15669386_SNP [dm3] X_15775353_SNP [dm6]	C	G	3.246e^-5	0.657	SYNONYMOUS_CODING CG43672
2L	12614842	2L_12614842_SNP [dm3] 2L_12614842_SNP [dm6]	G	T	3.257e^-5	0.657	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10711784	2L_10711784_SNP [dm3] 2L_10711784_SNP [dm6]	G	A	3.259e^-5	0.657	INTERGENIC
2R	18200536	2R_18200536_SNP [dm3] 2R_22313031_SNP [dm6]	C	A	3.299e^-5	0.658	INTRON CR44758
2L	7797714	2L_7797714_SNP [dm3] 2L_7797714_SNP [dm6]	C	T	3.389e^-5	0.664	SYNONYMOUS_CODING Herp	TF binding site mE1_TFBS_cad
2L	8423893	2L_8423893_SNP [dm3] 2L_8423893_SNP [dm6]	G	C	3.399e^-5	0.664	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3R	15100098	3R_15100098_SNP [dm3] 3R_19274376_SNP [dm6]	A	C	3.448e^-5	0.667	INTERGENIC
X	14661376	X_14661376_SNP [dm3] X_14767343_SNP [dm6]	C	T	3.554e^-5	0.675	INTERGENIC
3L	8704906	3L_8704906_SNP [dm3] 3L_8711806_SNP [dm6]	T	A	3.598e^-5	0.675	INTERGENIC	regulatory region REDfly_CRMs
3R	21994263	3R_21994263_SNP [dm3] 3R_26168541_SNP [dm6]	A	C	3.632e^-5	0.675	INTERGENIC

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Missing results

By genomic position
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mn_Dev_Time_Lead phenotype

Phenotype distribution and association to known covariates

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GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results