DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.473e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.08718
In_3R_K	0.06738

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	5.93	0.0516

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2181 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	16739791	2R_16739791_SNP [dm3] 2R_20852286_SNP [dm6]	C	T	2.675e^-7	0.298	UPSTREAM CG9993 INTERGENIC
2R	18201315	2R_18201315_SNP [dm3] 2R_22313810_SNP [dm6]	C	A	3.765e^-7	0.298	INTRON CR44758
X	2615293	X_2615293_SNP [dm3] X_2721260_SNP [dm6]	C	G	7.639e^-7	0.298	NON_SYNONYMOUS_CODING fs_1_Yb UPSTREAM CG2701	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	15365665	3R_15365665_SNP [dm3] 3R_19539943_SNP [dm6]	C	A	9.241e^-7	0.298	INTRON Dys
2R	18201316	2R_18201316_SNP [dm3] 2R_22313811_SNP [dm6]	C	A	1.072e^-6	0.298	INTRON CR44758
2L	10708136	2L_10708136_SNP [dm3] 2L_10708136_SNP [dm6]	T	A	1.074e^-6	0.298	INTRON Lip2
3R	15100098	3R_15100098_SNP [dm3] 3R_19274376_SNP [dm6]	A	C	1.112e^-6	0.298	INTERGENIC
X	14782457	X_14782457_SNP [dm3] X_14888424_SNP [dm6]	A	G	1.406e^-6	0.33	SYNONYMOUS_CODING CG9514 INTRON Flo2
X	19887172	X_19887172_SNP [dm3] X_19993139_SNP [dm6]	A	T	1.592e^-6	0.332	INTERGENIC
X	15669386	X_15669386_SNP [dm3] X_15775353_SNP [dm6]	C	G	1.982e^-6	0.372	SYNONYMOUS_CODING CG43672
2L	10710754	2L_10710754_SNP [dm3] 2L_10710754_SNP [dm6]	G	A	2.300e^-6	0.392	DOWNSTREAM CR44407 INTERGENIC
2R	4589494	2R_4589494_SNP [dm3] 2R_8701989_SNP [dm6]	C	T	2.800e^-6	0.438	SYNONYMOUS_CODING CG12376 UPSTREAM CG12376 & 1 other
X	15669389	X_15669389_SNP [dm3] X_15775356_SNP [dm6]	G	T	4.066e^-6	0.478	NON_SYNONYMOUS_CODING CG43672
3L	7599798	3L_7599798_SNP [dm3] 3L_7606698_SNP [dm6]	G	A	4.236e^-6	0.478	INTRON CG33275
2L	11427861	2L_11427861_SNP [dm3] 2L_11427861_SNP [dm6]	C	G	4.354e^-6	0.478	INTERGENIC
2R	11170575	2R_11170575_SNP [dm3] 2R_15283070_SNP [dm6]	A	G	4.360e^-6	0.478	INTRON Trpm
2L	6749997	2L_6749997_SNP [dm3] 2L_6749997_SNP [dm6]	T	G	4.430e^-6	0.478	INTRON CG11221
2R	9164356	2R_9164356_SNP [dm3] 2R_13276851_SNP [dm6]	T	G	4.590e^-6	0.478	INTRON Dh31-R
2L	13995575	2L_13995575_SNP [dm3] 2L_13995575_SNP [dm6]	C	A	4.979e^-6	0.488	INTRON rk
X	14919584	X_14919584_SNP [dm3] X_15025551_SNP [dm6]	C	T	5.207e^-6	0.488	INTRON hiw & 1 other
3R	24540380	3R_24540380_SNP [dm3] 3R_28714658_SNP [dm6]	T	C	5.589e^-6	0.49	INTRON htt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	14919600	X_14919600_SNP [dm3] X_15025567_SNP [dm6]	T	G	5.742e^-6	0.49	INTRON hiw & 1 other
2R	11170603	2R_11170603_SNP [dm3] 2R_15283098_SNP [dm6]	T	A	7.204e^-6	0.517	INTRON Trpm
X	14919610	X_14919610_SNP [dm3] X_15025577_SNP [dm6]	A	T	7.926e^-6	0.517	INTRON hiw & 1 other
2L	11508472	2L_11508472_SNP [dm3] 2L_11508472_SNP [dm6]	T	C	8.214e^-6	0.517	UTR_3_PRIME spz4 & 1 other DOWNSTREAM CG6509
3R	15369049	3R_15369049_SNP [dm3] 3R_19543327_SNP [dm6]	G	A	8.918e^-6	0.517	INTRON Dys
3L	18698614	3L_18698614_SNP [dm3] 3L_18705514_SNP [dm6]	G	T	8.978e^-6	0.517	INTERGENIC
2L	13988913	2L_13988913_SNP [dm3] 2L_13988913_SNP [dm6]	T	C	9.082e^-6	0.517	INTRON rk
X	14909392	X_14909392_DEL [dm3] X_15015359_DEL [dm6]	GTTA	G	9.126e^-6	0.517	INTRON hiw	TF binding site mE1_TFBS_chinmo
3L	7599800	3L_7599800_SNP [dm3] 3L_7606700_SNP [dm6]	A	G	9.292e^-6	0.517	INTRON CG33275
X	14913337	X_14913337_DEL [dm3] X_15019304_DEL [dm6]	TATTAGAAAT	T	9.330e^-6	0.517	INTRON hiw	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14919621	X_14919621_SNP [dm3] X_15025588_SNP [dm6]	C	T	9.415e^-6	0.517	INTRON hiw & 1 other
2L	10710709	2L_10710709_SNP [dm3] 2L_10710709_SNP [dm6]	A	G	9.538e^-6	0.517	EXON CR44407
2L	10711939	2L_10711939_SNP [dm3] 2L_10711939_SNP [dm6]	G	C	1.003e^-5	0.517	INTERGENIC
2L	10711791	2L_10711791_DEL [dm3] 2L_10711791_DEL [dm6]	TA	T	1.015e^-5	0.517	INTERGENIC
2R	3391066	2R_3391066_SNP [dm3] 2R_7503561_SNP [dm6]	A	T	1.025e^-5	0.517	INTRON didum	TF binding site mE1_TFBS_cad
2L	19301395	2L_19301395_SNP [dm3] 2L_19301395_SNP [dm6]	C	T	1.030e^-5	0.517	INTRON CG10750
2R	8485998	2R_8485998_SNP [dm3] 2R_12598493_SNP [dm6]	A	T	1.059e^-5	0.517	INTRON Amph
X	14623873	X_14623873_SNP [dm3] X_14729840_SNP [dm6]	G	C	1.075e^-5	0.517	INTRON NetB
2L	10710741	2L_10710741_SNP [dm3] 2L_10710741_SNP [dm6]	A	T	1.109e^-5	0.52	DOWNSTREAM CR44407 INTERGENIC
2L	10711784	2L_10711784_SNP [dm3] 2L_10711784_SNP [dm6]	G	A	1.144e^-5	0.523	INTERGENIC
2R	12196035	2R_12196035_SNP [dm3] 2R_16308530_SNP [dm6]	A	G	1.255e^-5	0.541	UTR_5_PRIME Nox UPSTREAM Nox	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14661371	X_14661371_SNP [dm3] X_14767338_SNP [dm6]	G	T	1.292e^-5	0.541	INTERGENIC
X	14919594	X_14919594_SNP [dm3] X_15025561_SNP [dm6]	T	G	1.325e^-5	0.541	INTRON hiw & 1 other
2L	3672277	2L_3672277_SNP [dm3] 2L_3672277_SNP [dm6]	T	G	1.335e^-5	0.541	INTRON CG34340
2L	10659215	2L_10659215_SNP [dm3] 2L_10659215_SNP [dm6]	T	C	1.393e^-5	0.541	DOWNSTREAM CG45690 INTERGENIC
X	14661376	X_14661376_SNP [dm3] X_14767343_SNP [dm6]	C	T	1.458e^-5	0.541	INTERGENIC
2R	13364759	2R_13364759_SNP [dm3] 2R_17477254_SNP [dm6]	T	C	1.482e^-5	0.541	UPSTREAM CG6520 & 1 other DOWNSTREAM CG43110 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
X	14919572	X_14919572_SNP [dm3] X_15025539_SNP [dm6]	G	A	1.503e^-5	0.541	INTRON hiw & 1 other
2L	11361298	2L_11361298_SNP [dm3] 2L_11361298_SNP [dm6]	T	G	1.509e^-5	0.541	INTRON salr	regulatory region REDfly_CRMs
X	2615520	X_2615520_SNP [dm3] X_2721487_SNP [dm6]	T	A	1.521e^-5	0.541	NON_SYNONYMOUS_CODING fs_1_Yb	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	10710319	2L_10710319_DEL [dm3] 2L_10710319_DEL [dm6]	CC	C	1.535e^-5	0.541	UPSTREAM Lip2 EXON CR44407
X	4425768	X_4425768_SNP [dm3] X_4531735_SNP [dm6]	C	T	1.541e^-5	0.541	SYNONYMOUS_CODING CG3556 INTRON CR32773
2L	5786230	2L_5786230_SNP [dm3] 2L_5786230_SNP [dm6]	G	T	1.558e^-5	0.541	INTRON CG9171	TF binding site BDTNP1_TFBS_twi
X	14919603	X_14919603_SNP [dm3] X_15025570_SNP [dm6]	A	T	1.640e^-5	0.559	INTRON hiw & 1 other
2L	8667784	2L_8667784_SNP [dm3] 2L_8667784_SNP [dm6]	A	G	1.681e^-5	0.561	UTR_3_PRIME Sema-1a DOWNSTREAM Sema-1a
X	14919656	X_14919656_SNP [dm3] X_15025623_SNP [dm6]	C	T	1.797e^-5	0.561	INTRON hiw & 1 other
3L	10809405	3L_10809405_SNP [dm3] 3L_10816305_SNP [dm6]	T	G	1.811e^-5	0.561	UPSTREAM CR45247 DOWNSTREAM CG42831 INTERGENIC
3R	24540387	3R_24540387_SNP [dm3] 3R_28714665_SNP [dm6]	C	T	1.813e^-5	0.561	SPLICE_SITE_REGION htt INTRON htt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	19203960	X_19203960_SNP [dm3] X_19309927_SNP [dm6]	T	A	1.842e^-5	0.561	DOWNSTREAM out INTERGENIC
X	7759341	X_7759341_SNP [dm3] X_7865308_SNP [dm6]	A	G	1.851e^-5	0.561	SYNONYMOUS_CODING Ir7b
2R	18205033	2R_18205033_SNP [dm3] 2R_22317528_SNP [dm6]	T	C	1.864e^-5	0.561	UPSTREAM Gp150 DOWNSTREAM CR44758 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	12611541	3L_12611541_SNP [dm3] 3L_12618441_SNP [dm6]	A	G	1.923e^-5	0.561	SYNONYMOUS_CODING caup
2R	18200536	2R_18200536_SNP [dm3] 2R_22313031_SNP [dm6]	C	A	1.955e^-5	0.561	INTRON CR44758
3R	18405727	3R_18405727_SNP [dm3] 3R_22580005_SNP [dm6]	A	T	1.958e^-5	0.561	UTR_3_PRIME CG33110 UPSTREAM CSN6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	7921226	2R_7921226_DEL [dm3] 2R_12033721_DEL [dm6]	AA	A	1.974e^-5	0.561	UTR_3_PRIME pds5 UPSTREAM CG8321	TF binding site BDTNP1_TFBS_dl
X	4808093	X_4808093_SNP [dm3] X_4914060_SNP [dm6]	A	G	2.033e^-5	0.569	SYNONYMOUS_CODING CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15669374	X_15669374_SNP [dm3] X_15775341_SNP [dm6]	T	G	2.118e^-5	0.571	NON_SYNONYMOUS_CODING CG43672
X	14919650	X_14919650_SNP [dm3] X_15025617_SNP [dm6]	G	C	2.136e^-5	0.571	INTRON hiw & 1 other
X	13813432	X_13813432_SNP [dm3] X_13919399_SNP [dm6]	A	G	2.141e^-5	0.571	INTRON mamo
2L	10906341	2L_10906341_SNP [dm3] 2L_10906341_SNP [dm6]	C	A	2.166e^-5	0.571	UTR_3_PRIME CG7309
2L	11508819	2L_11508819_SNP [dm3] 2L_11508819_SNP [dm6]	T	C	2.193e^-5	0.571	UTR_3_PRIME CG6509 DOWNSTREAM spz4
3L	10300678	3L_10300678_SNP [dm3] 3L_10307578_SNP [dm6]	G	A	2.301e^-5	0.591	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6651318	3L_6651318_SNP [dm3] 3L_6658218_SNP [dm6]	A	G	2.396e^-5	0.601	INTERGENIC
3L	7599792	3L_7599792_SNP [dm3] 3L_7606692_SNP [dm6]	T	G	2.404e^-5	0.601	INTRON CG33275
2L	529575	2L_529575_SNP [dm3] 2L_529575_SNP [dm6]	A	T	2.433e^-5	0.601	INTRON ush	regulatory region REDfly_CRMs
2R	11170605	2R_11170605_DEL [dm3] 2R_15283100_DEL [dm6]	TTATAA	GGGC	2.635e^-5	0.634	INTRON Trpm
3R	21994263	3R_21994263_SNP [dm3] 3R_26168541_SNP [dm6]	A	C	2.636e^-5	0.634	INTERGENIC
2L	8809114	2L_8809114_SNP [dm3] 2L_8809114_SNP [dm6]	G	C	2.782e^-5	0.647	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	2615401	X_2615401_SNP [dm3] X_2721368_SNP [dm6]	G	A	2.799e^-5	0.647	NON_SYNONYMOUS_CODING fs_1_Yb	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	19301391	2L_19301391_SNP [dm3] 2L_19301391_SNP [dm6]	C	T	2.922e^-5	0.647	INTRON CG10750
2L	4133243	2L_4133243_SNP [dm3] 2L_4133243_SNP [dm6]	T	C	2.938e^-5	0.647	INTERGENIC
2L	4133244	2L_4133244_SNP [dm3] 2L_4133244_SNP [dm6]	G	A	2.938e^-5	0.647	INTERGENIC
2L	8550085	2L_8550085_SNP [dm3] 2L_8550085_SNP [dm6]	T	C	2.949e^-5	0.647	INTRON Sema-1a
2R	16735454	2R_16735454_SNP [dm3] 2R_20847949_SNP [dm6]	A	T	2.963e^-5	0.647	DOWNSTREAM CG17999 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	15669425	X_15669425_SNP [dm3] X_15775392_SNP [dm6]	G	A	2.968e^-5	0.647	SYNONYMOUS_CODING CG43672
X	15446858	X_15446858_SNP [dm3] X_15552825_SNP [dm6]	C	G	3.031e^-5	0.648	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6956393	3R_6956393_SNP [dm3] 3R_11130671_SNP [dm6]	T	C	3.132e^-5	0.648	INTERGENIC
2L	11356443	2L_11356443_SNP [dm3] 2L_11356443_SNP [dm6]	T	G	3.138e^-5	0.648	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	14919667	X_14919667_SNP [dm3] X_15025634_SNP [dm6]	C	T	3.142e^-5	0.648	INTRON hiw & 1 other
3L	2727408	3L_2727408_SNP [dm3] 3L_2727408_SNP [dm6]	C	T	3.143e^-5	0.648	INTRON Mrtf
2L	10711827	2L_10711827_SNP [dm3] 2L_10711827_SNP [dm6]	T	C	3.183e^-5	0.649	INTERGENIC
2R	5095554	2R_5095554_DEL [dm3] 2R_9208049_DEL [dm6]	GG	G	3.247e^-5	0.649	UPSTREAM CG8027 INTRON VhaAC45	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	15446239	X_15446239_INS [dm3] X_15552206_INS [dm6]	T	TTAATTGAGCATC...	3.284e^-5	0.649	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	10712519	2L_10712519_SNP [dm3] 2L_10712519_SNP [dm6]	G	C	3.285e^-5	0.649	INTERGENIC
2R	14572112	2R_14572112_SNP [dm3] 2R_18684607_SNP [dm6]	T	C	3.321e^-5	0.649	NON_SYNONYMOUS_CODING CG44433 UPSTREAM CG44434 & 1 other
2R	15686404	2R_15686404_SNP [dm3] 2R_19798899_SNP [dm6]	C	T	3.396e^-5	0.657	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15369087	3R_15369087_SNP [dm3] 3R_19543365_SNP [dm6]	A	G	3.500e^-5	0.67	INTRON Dys
X	2615506	X_2615506_SNP [dm3] X_2721473_SNP [dm6]	C	T	3.667e^-5	0.695	NON_SYNONYMOUS_CODING fs_1_Yb	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	6749564	2L_6749564_INS [dm3] 2L_6749564_INS [dm6]	T	TA	3.788e^-5	0.711	INTRON CG11221
X	16607127	X_16607127_SNP [dm3] X_16713094_SNP [dm6]	G	A	3.866e^-5	0.711	SYNONYMOUS_CODING CG13008	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19400339	2R_19400339_SNP [dm3] 2R_23512816_SNP [dm6]	G	T	3.875e^-5	0.711	UPSTREAM CG3906 INTERGENIC
2R	12396224	2R_12396224_SNP [dm3] 2R_16508719_SNP [dm6]	A	C	3.989e^-5	0.711	INTRON Sema-2a
2L	7696870	2L_7696870_SNP [dm3] 2L_7696870_SNP [dm6]	T	G	4.031e^-5	0.711	INTRON Tep2
3R	15130637	3R_15130637_SNP [dm3] 3R_19304915_SNP [dm6]	T	C	4.047e^-5	0.711	SYNONYMOUS_CODING Dl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	14913284	X_14913284_SNP [dm3] X_15019251_SNP [dm6]	A	C	4.053e^-5	0.711	INTRON hiw	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11932578	2R_11932578_SNP [dm3] 2R_16045073_SNP [dm6]	G	A	4.088e^-5	0.711	SPLICE_SITE_REGION SP2353 INTRON SP2353
2R	8417564	2R_8417564_SNP [dm3] 2R_12530059_SNP [dm6]	A	C	4.210e^-5	0.711	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3672346	2L_3672346_SNP [dm3] 2L_3672346_SNP [dm6]	A	C	4.232e^-5	0.711	INTRON CG34340
2R	3391046	2R_3391046_SNP [dm3] 2R_7503541_SNP [dm6]	A	G	4.337e^-5	0.711	INTRON didum	TF binding site mE1_TFBS_cad
2R	12047514	2R_12047514_SNP [dm3] 2R_16160009_SNP [dm6]	T	C	4.356e^-5	0.711	INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17564884	2R_17564884_SNP [dm3] 2R_21677379_SNP [dm6]	C	G	4.369e^-5	0.711	INTRON CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13364233	2R_13364233_SNP [dm3] 2R_17476728_SNP [dm6]	G	T	4.422e^-5	0.711	UPSTREAM CG6520 DOWNSTREAM CG43110 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	14271975	3L_14271975_SNP [dm3] 3L_14278875_SNP [dm6]	A	G	4.566e^-5	0.711	INTRON fz	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14919669	X_14919669_INS [dm3] X_15025636_INS [dm6]	C	CTG	4.575e^-5	0.711	INTRON hiw & 1 other
2L	2517361	2L_2517361_SNP [dm3] 2L_2517361_SNP [dm6]	C	T	4.579e^-5	0.711	SYNONYMOUS_CODING CG3528
2R	851779	2R_851779_INS [dm3] 2R_4964274_INS [dm6]	T	TTTTCTGCCTCTAACAATT...	4.615e^-5	0.711	INTRON Ir41a	transposable element FlyBase
2L	12547485	2L_12547485_SNP [dm3] 2L_12547485_SNP [dm6]	T	A	4.650e^-5	0.711	UPSTREAM bun INTERGENIC	TF binding site mE1_TFBS_HSA
2L	18498204	2L_18498204_SNP [dm3] 2L_18498204_SNP [dm6]	T	G	4.655e^-5	0.711	INTRON kon
X	15086054	X_15086054_SNP [dm3] X_15192021_SNP [dm6]	T	A	4.680e^-5	0.711	INTERGENIC
2L	8982095	2L_8982095_SNP [dm3] 2L_8982095_SNP [dm6]	T	C	4.709e^-5	0.711	DOWNSTREAM CG18662 INTRON CG13101
2L	9406278	2L_9406278_SNP [dm3] 2L_9406278_SNP [dm6]	G	A	4.758e^-5	0.711	INTRON Shawl
2L	12109369	2L_12109369_SNP [dm3] 2L_12109369_SNP [dm6]	C	T	4.786e^-5	0.711	UPSTREAM Phae1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	7673681	2L_7673681_SNP [dm3] 2L_7673681_SNP [dm6]	C	A	4.886e^-5	0.711	INTRON Slob & 1 other	TF binding site mE1_TFBS_sens
2R	18205036	2R_18205036_SNP [dm3] 2R_22317531_SNP [dm6]	T	A	4.891e^-5	0.711	UPSTREAM Gp150 DOWNSTREAM CR44758 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	16735465	X_16735465_SNP [dm3] X_16841432_SNP [dm6]	G	A	4.971e^-5	0.711	INTRON RSG7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8940027	2L_8940027_SNP [dm3] 2L_8940027_SNP [dm6]	G	A	4.972e^-5	0.711	SYNONYMOUS_CODING CG9510 DOWNSTREAM Tsp29Fb
3L	10315322	3L_10315322_SNP [dm3] 3L_10322222_SNP [dm6]	A	G	4.983e^-5	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	18205971	2R_18205971_SNP [dm3] 2R_22318466_SNP [dm6]	C	A	4.996e^-5	0.711	UTR_5_PRIME Gp150 DOWNSTREAM CR44756 INTRON Gp150	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	14909319	X_14909319_SNP [dm3] X_15015286_SNP [dm6]	A	G	4.999e^-5	0.711	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
X	15084724	X_15084724_SNP [dm3] X_15190691_SNP [dm6]	C	A	5.068e^-5	0.711	DOWNSTREAM CG43737 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	15086636	X_15086636_SNP [dm3] X_15192603_SNP [dm6]	A	T	5.068e^-5	0.711	INTERGENIC
X	15086887	X_15086887_SNP [dm3] X_15192854_SNP [dm6]	C	T	5.068e^-5	0.711	INTERGENIC
2L	8940123	2L_8940123_SNP [dm3] 2L_8940123_SNP [dm6]	G	A	5.088e^-5	0.711	SYNONYMOUS_CODING CG9510 DOWNSTREAM Tsp29Fb
2L	10711803	2L_10711803_DEL [dm3] 2L_10711803_DEL [dm6]	TATCAAAAATGT...	T	5.131e^-5	0.711	INTERGENIC
3L	10283028	3L_10283028_SNP [dm3] 3L_10289928_SNP [dm6]	T	G	5.156e^-5	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	18163652	3R_18163652_DEL [dm3] 3R_22337930_DEL [dm6]	ACATA	A	5.271e^-5	0.716	INTRON CG5388
3L	12316404	3L_12316404_SNP [dm3] 3L_12323304_SNP [dm6]	T	C	5.351e^-5	0.716	INTERGENIC
2L	8367337	2L_8367337_SNP [dm3] 2L_8367337_SNP [dm6]	C	T	5.447e^-5	0.716	SYNONYMOUS_CODING Pp2A-29B	TF binding site mE1_TFBS_cad
X	14913493	X_14913493_SNP [dm3] X_15019460_SNP [dm6]	T	C	5.458e^-5	0.716	INTRON hiw	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8005476	2L_8005476_SNP [dm3] 2L_8005476_SNP [dm6]	A	G	5.487e^-5	0.716	SYNONYMOUS_CODING Spn28Dc	TF binding site mE1_TFBS_cad
X	14920496	X_14920496_SNP [dm3] X_15026463_SNP [dm6]	G	A	5.502e^-5	0.716	INTRON hiw & 1 other
X	16050833	X_16050833_SNP [dm3] X_16156800_SNP [dm6]	T	C	5.516e^-5	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	27455511	3R_27455511_SNP [dm3] 3R_31629789_SNP [dm6]	T	C	5.586e^-5	0.716	INTRON kek6
3L	11191658	3L_11191658_SNP [dm3] 3L_11198558_SNP [dm6]	A	C	5.600e^-5	0.716	SYNONYMOUS_CODING Plod	TF binding site mE1_TFBS_sens
X	15086253	X_15086253_SNP [dm3] X_15192220_SNP [dm6]	T	C	5.659e^-5	0.716	INTERGENIC
3L	10418981	3L_10418981_SNP [dm3] 3L_10425881_SNP [dm6]	C	T	5.681e^-5	0.716	INTERGENIC
2L	8324477	2L_8324477_SNP [dm3] 2L_8324477_SNP [dm6]	C	A	5.687e^-5	0.716	INTRON CG7781
X	16609988	X_16609988_SNP [dm3] X_16715955_SNP [dm6]	T	A	5.707e^-5	0.716	INTRON CG34325
X	2615604	X_2615604_SNP [dm3] X_2721571_SNP [dm6]	T	A	5.731e^-5	0.716	SYNONYMOUS_CODING fs_1_Yb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	19304527	2L_19304527_SNP [dm3] 2L_19304527_SNP [dm6]	G	A	5.760e^-5	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11361353	2L_11361353_SNP [dm3] 2L_11361353_SNP [dm6]	G	A	5.897e^-5	0.728	INTRON salr	regulatory region REDfly_CRMs
X	3873270	X_3873270_SNP [dm3] X_3979237_SNP [dm6]	T	C	5.967e^-5	0.728	INTERGENIC
2L	19301370	2L_19301370_SNP [dm3] 2L_19301370_SNP [dm6]	C	T	5.981e^-5	0.728	INTRON CG10750
3L	10283033	3L_10283033_INS [dm3] 3L_10289933_INS [dm6]	T	TCATTTT	6.071e^-5	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	14907958	X_14907958_SNP [dm3] X_15013925_SNP [dm6]	T	C	6.116e^-5	0.728	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
2R	3363055	2R_3363055_SNP [dm3] 2R_7475550_SNP [dm6]	A	G	6.142e^-5	0.728	UTR_5_PRIME Aldh-III UPSTREAM Aldh-III
2R	9832149	2R_9832149_INS [dm3] 2R_13944644_INS [dm6]	T	TTATCT	6.157e^-5	0.728	UTR_3_PRIME AGO1 DOWNSTREAM AGO1	TF binding site BDTNP1_TFBS_dl
2R	4511504	2R_4511504_SNP [dm3] 2R_8623999_SNP [dm6]	T	G	6.232e^-5	0.728	UTR_3_PRIME Cirl
2L	19301376	2L_19301376_SNP [dm3] 2L_19301376_SNP [dm6]	G	A	6.374e^-5	0.728	INTRON CG10750
2L	19301401	2L_19301401_SNP [dm3] 2L_19301401_SNP [dm6]	C	T	6.374e^-5	0.728	SPLICE_SITE_ACCEPTOR CG10750 SPLICE_SITE_REGION CG10750 SYNONYMOUS_CODING CG10750 INTRON CG10750
X	10964525	X_10964525_INS [dm3] X_11070492_INS [dm6]	T	TT	6.527e^-5	0.728	DOWNSTREAM sev INTERGENIC
3L	10282813	3L_10282813_SNP [dm3] 3L_10289713_SNP [dm6]	A	G	6.625e^-5	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18463255	2L_18463255_DEL [dm3] 2L_18463255_DEL [dm6]	TC	T	6.648e^-5	0.728	INTRON let-7-C
2L	8034210	2L_8034210_SNP [dm3] 2L_8034210_SNP [dm6]	G	T	6.650e^-5	0.728	INTRON CG7367 & 1 other
2R	5209078	2R_5209078_DEL [dm3] 2R_9321573_DEL [dm6]	GG	G	6.653e^-5	0.728	INTRON CG13954 & 1 other
2R	16168642	2R_16168642_SNP [dm3] 2R_20281137_SNP [dm6]	T	A	6.656e^-5	0.728	UPSTREAM CG9090 DOWNSTREAM CG16868 INTERGENIC
3L	7262060	3L_7262060_SNP [dm3] 3L_7268960_SNP [dm6]	G	A	6.730e^-5	0.728	UTR_3_PRIME unc-13-4A
3L	7948802	3L_7948802_SNP [dm3] 3L_7955702_SNP [dm6]	A	G	6.742e^-5	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	14661409	X_14661409_SNP [dm3] X_14767376_SNP [dm6]	C	T	6.759e^-5	0.728	INTERGENIC
2L	10710803	2L_10710803_INS [dm3] 2L_10710803_INS [dm6]	T	TAAAAGGAACAATACAT...	6.763e^-5	0.728	DOWNSTREAM CR44407 INTERGENIC
2L	18463295	2L_18463295_SNP [dm3] 2L_18463295_SNP [dm6]	A	G	6.773e^-5	0.728	INTRON let-7-C
X	3873456	X_3873456_SNP [dm3] X_3979423_SNP [dm6]	T	G	6.782e^-5	0.728	INTERGENIC
2R	9164276	2R_9164276_SNP [dm3] 2R_13276771_SNP [dm6]	A	G	6.826e^-5	0.728	INTRON Dh31-R
3L	10307913	3L_10307913_SNP [dm3] 3L_10314813_SNP [dm6]	G	A	6.872e^-5	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	12132227	2L_12132227_SNP [dm3] 2L_12132227_SNP [dm6]	A	T	6.889e^-5	0.728	INTRON rho-6
2L	4790420	2L_4790420_DEL [dm3] 2L_4790420_DEL [dm6]	ACACA	A	6.916e^-5	0.728	INTRON CG15630
X	14910741	X_14910741_SNP [dm3] X_15016708_SNP [dm6]	G	T	6.936e^-5	0.728	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
X	14912133	X_14912133_SNP [dm3] X_15018100_SNP [dm6]	T	C	6.955e^-5	0.728	INTRON hiw	TF binding site mE1_TFBS_chinmo
3L	1398585	3L_1398585_INS [dm3] 3L_1398585_INS [dm6]	A	AG	6.993e^-5	0.728	UTR_5_PRIME CG32320 DOWNSTREAM tRNA:E4:62Aa & 3 others INTRON Ptp61F
2L	9507907	2L_9507907_SNP [dm3] 2L_9507907_SNP [dm6]	A	C	7.028e^-5	0.728	INTRON CG33298
2L	8365885	2L_8365885_SNP [dm3] 2L_8365885_SNP [dm6]	G	A	7.124e^-5	0.734	UPSTREAM Pp2A-29B DOWNSTREAM CSN8 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	11427649	2L_11427649_DEL [dm3] 2L_11427649_DEL [dm6]	CTTCTTCCA	C	7.283e^-5	0.737	INTERGENIC
3L	10283023	3L_10283023_SNP [dm3] 3L_10289923_SNP [dm6]	A	T	7.285e^-5	0.737	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	3159646	X_3159646_SNP [dm3] X_3265613_SNP [dm6]	T	C	7.327e^-5	0.737	INTRON dnc
X	15086191	X_15086191_SNP [dm3] X_15192158_SNP [dm6]	T	G	7.378e^-5	0.737	INTERGENIC
X	14913303	X_14913303_SNP [dm3] X_15019270_SNP [dm6]	T	C	7.389e^-5	0.737	INTRON hiw	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18200827	2R_18200827_SNP [dm3] 2R_22313322_SNP [dm6]	T	A	7.415e^-5	0.737	INTRON CR44758
2R	11932693	2R_11932693_SNP [dm3] 2R_16045188_SNP [dm6]	C	A	7.582e^-5	0.737	SPLICE_SITE_REGION SP2353 INTRON SP2353
X	14912162	X_14912162_SNP [dm3] X_15018129_SNP [dm6]	G	A	7.593e^-5	0.737	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
3R	25009426	3R_25009426_SNP [dm3] 3R_29183704_SNP [dm6]	A	G	7.670e^-5	0.737	INTRON CG14509
2R	2727993	2R_2727993_SNP [dm3] 2R_6840488_SNP [dm6]	A	C	7.690e^-5	0.737	INTERGENIC
3L	10596522	3L_10596522_SNP [dm3] 3L_10603422_SNP [dm6]	A	G	7.706e^-5	0.737	INTERGENIC
2R	11932614	2R_11932614_SNP [dm3] 2R_16045109_SNP [dm6]	T	C	7.713e^-5	0.737	SYNONYMOUS_CODING SP2353
2L	18503544	2L_18503544_SNP [dm3] 2L_18503544_SNP [dm6]	G	T	7.766e^-5	0.737	INTRON kon
2L	16182733	2L_16182733_SNP [dm3] 2L_16182733_SNP [dm6]	C	T	7.864e^-5	0.737	INTRON Ca-alpha1D
2R	4511520	2R_4511520_SNP [dm3] 2R_8624015_SNP [dm6]	T	G	7.879e^-5	0.737	UTR_3_PRIME Cirl
2R	8417633	2R_8417633_SNP [dm3] 2R_12530128_SNP [dm6]	G	T	7.905e^-5	0.737	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	17793901	3R_17793901_SNP [dm3] 3R_21968179_SNP [dm6]	A	G	7.905e^-5	0.737	INTRON Eip93F
2L	2213249	2L_2213249_SNP [dm3] 2L_2213249_SNP [dm6]	T	C	7.928e^-5	0.737	SYNONYMOUS_CODING Uch UPSTREAM CG15385	TF binding site mE1_TFBS_cad
X	19203961	X_19203961_SNP [dm3] X_19309928_SNP [dm6]	T	C	7.938e^-5	0.737	DOWNSTREAM out INTERGENIC
2L	19301431	2L_19301431_SNP [dm3] 2L_19301431_SNP [dm6]	C	T	7.956e^-5	0.737	SYNONYMOUS_CODING CG10750
3L	17530582	3L_17530582_SNP [dm3] 3L_17537482_SNP [dm6]	T	C	7.977e^-5	0.737	INTRON Nedd4	TF binding site mE1_TFBS_inv
X	14919243	X_14919243_SNP [dm3] X_15025210_SNP [dm6]	T	A	8.100e^-5	0.742	INTRON hiw & 1 other	TF binding site BDTNP1_TFBS_dl
3L	10300552	3L_10300552_SNP [dm3] 3L_10307452_SNP [dm6]	A	T	8.111e^-5	0.742	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	20237875	2R_20237875_SNP [dm3] 2R_24350352_SNP [dm6]	G	C	8.149e^-5	0.742	DOWNSTREAM CG44812 & 1 other INTRON bs
3L	9730696	3L_9730696_INS [dm3] 3L_9737596_INS [dm6]	A	ATTGTA	8.223e^-5	0.742	INTRON CG42268
X	14908040	X_14908040_SNP [dm3] X_15014007_SNP [dm6]	C	A	8.272e^-5	0.742	INTRON hiw	TF binding site mE1_TFBS_chinmo
2R	12035674	2R_12035674_SNP [dm3] 2R_16148169_SNP [dm6]	G	C	8.305e^-5	0.742	SYNONYMOUS_CODING Ext2 DOWNSTREAM CG10731	TF binding site mE1_TFBS_sens
2L	7673680	2L_7673680_SNP [dm3] 2L_7673680_SNP [dm6]	C	A	8.342e^-5	0.742	INTRON Slob & 1 other	TF binding site mE1_TFBS_sens
X	18986526	X_18986526_SNP [dm3] X_19092493_SNP [dm6]	C	A	8.439e^-5	0.742	INTERGENIC
X	15024544	X_15024544_SNP [dm3] X_15130511_SNP [dm6]	G	T	8.513e^-5	0.742	INTRON drd
X	15509930	X_15509930_DEL [dm3] X_15615897_DEL [dm6]	TTAATTGGCTGCGTGCGAGC...	C	8.532e^-5	0.742	INTRON sog
X	15084789	X_15084789_SNP [dm3] X_15190756_SNP [dm6]	C	A	8.550e^-5	0.742	DOWNSTREAM CG43737 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12324050	2L_12324050_SNP [dm3] 2L_12324050_SNP [dm6]	T	C	8.570e^-5	0.742	INTERGENIC
3R	25271768	3R_25271768_SNP [dm3] 3R_29446046_SNP [dm6]	T	A	8.572e^-5	0.742	INTRON Ptp99A
2L	12107023	2L_12107023_SNP [dm3] 2L_12107023_SNP [dm6]	C	T	8.624e^-5	0.742	UTR_3_PRIME Aats-thr DOWNSTREAM Rab6 & 1 other
X	14910496	X_14910496_SNP [dm3] X_15016463_SNP [dm6]	T	C	8.665e^-5	0.742	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
2R	18210222	2R_18210222_SNP [dm3] 2R_22322717_SNP [dm6]	C	T	8.679e^-5	0.742	UPSTREAM Gp150 INTRON Gp150	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10282938	3L_10282938_MNP [dm3] 3L_10289838_MNP [dm6]	TAT	ACA	8.707e^-5	0.742	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3550216	2L_3550216_INS [dm3] 2L_3550216_INS [dm6]	T	TGTAT	8.750e^-5	0.742	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15635224	3R_15635224_SNP [dm3] 3R_19809502_SNP [dm6]	T	G	8.784e^-5	0.742	INTRON bnl
2L	4890857	2L_4890857_SNP [dm3] 2L_4890857_SNP [dm6]	C	T	8.886e^-5	0.743	SYNONYMOUS_CODING CG15625 DOWNSTREAM CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14575160	2R_14575160_SNP [dm3] 2R_18687655_SNP [dm6]	C	T	8.918e^-5	0.743	SYNONYMOUS_CODING CG42855 UPSTREAM CG44433 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	4236079	2L_4236079_SNP [dm3] 2L_4236079_SNP [dm6]	C	T	9.009e^-5	0.743	INTERGENIC
X	15446267	X_15446267_INS [dm3] X_15552234_INS [dm6]	A	AAATAAATGAA...	9.068e^-5	0.743	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10281242	3L_10281242_SNP [dm3] 3L_10288142_SNP [dm6]	T	A	9.085e^-5	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13253329	2L_13253329_SNP [dm3] 2L_13253329_SNP [dm6]	T	G	9.099e^-5	0.743	INTRON CG31728
2R	19508831	2R_19508831_INS [dm3] 2R_23621308_INS [dm6]	C	CTCGAGAGCCGAGC...	9.104e^-5	0.743	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	8484926	2R_8484926_SNP [dm3] 2R_12597421_SNP [dm6]	T	A	9.154e^-5	0.743	INTRON Amph
2R	6586580	2R_6586580_SNP [dm3] 2R_10699075_SNP [dm6]	A	C	9.162e^-5	0.743	INTRON stan
X	15509967	X_15509967_DEL [dm3] X_15615934_DEL [dm6]	AA	A	9.264e^-5	0.743	INTRON sog
X	4559253	X_4559253_SNP [dm3] X_4665220_SNP [dm6]	C	A	9.265e^-5	0.743	INTRON CG3009
3L	10282833	3L_10282833_SNP [dm3] 3L_10289733_SNP [dm6]	C	G	9.266e^-5	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11383699	2L_11383699_SNP [dm3] 2L_11383699_SNP [dm6]	G	A	9.358e^-5	0.747	INTERGENIC	regulatory region REDfly_CRMs
3R	15582954	3R_15582954_INS [dm3] 3R_19757232_INS [dm6]	A	AA	9.457e^-5	0.752	INTRON GluClalpha
X	14661374	X_14661374_SNP [dm3] X_14767341_SNP [dm6]	T	A	9.614e^-5	0.753	INTERGENIC
3L	9561557	3L_9561557_SNP [dm3] 3L_9568457_SNP [dm6]	A	G	9.688e^-5	0.753	INTRON CG42673
3L	9561561	3L_9561561_SNP [dm3] 3L_9568461_SNP [dm6]	T	G	9.688e^-5	0.753	INTRON CG42673
2L	19301027	2L_19301027_SNP [dm3] 2L_19301027_SNP [dm6]	T	C	9.796e^-5	0.753	INTRON CG10750	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14360419	3R_14360419_DEL [dm3] 3R_18534697_DEL [dm6]	CC	C	9.876e^-5	0.753	INTRON fru
X	16525779	X_16525779_SNP [dm3] X_16631746_SNP [dm6]	A	G	9.893e^-5	0.753	UPSTREAM CR45001 INTRON Rok & 1 other	TF binding site mE1_TFBS_inv
2R	7311688	2R_7311688_SNP [dm3] 2R_11424183_SNP [dm6]	G	A	9.897e^-5	0.753	INTRON Drip
2R	13238935	2R_13238935_INS [dm3] 2R_17351430_INS [dm6]	T	TT	9.942e^-5	0.753	INTRON mbl
3L	16906276	3L_16906276_SNP [dm3] 3L_16913176_SNP [dm6]	G	A	9.978e^-5	0.753	INTRON Lmpt
2L	18443456	2L_18443456_DEL [dm3] 2L_18443456_DEL [dm6]	GG	G	1.004e^-4	0.753	UPSTREAM RpS26 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run
2L	10698388	2L_10698388_MNP [dm3] 2L_10698388_MNP [dm6]	GGTGCT	TAAATA	1.005e^-4	0.753	UPSTREAM CG7300 DOWNSTREAM CR44181 INTERGENIC	TF binding site mE1_TFBS_ftz_f1
X	15024886	X_15024886_DEL [dm3] X_15130853_DEL [dm6]	CGGATTTATAGTC...	C	1.012e^-4	0.753	INTRON drd
3L	10305109	3L_10305109_SNP [dm3] 3L_10312009_SNP [dm6]	T	A	1.015e^-4	0.753	INTERGENIC
2R	9164307	2R_9164307_SNP [dm3] 2R_13276802_SNP [dm6]	A	T	1.015e^-4	0.753	INTRON Dh31-R
2R	18212484	2R_18212484_SNP [dm3] 2R_22324979_SNP [dm6]	G	A	1.016e^-4	0.753	UPSTREAM Gp150 INTRON Gp150	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_sens
2R	18204971	2R_18204971_INS [dm3] 2R_22317466_INS [dm6]	T	TAT	1.016e^-4	0.753	UPSTREAM Gp150 DOWNSTREAM CR44758 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	19299427	2L_19299427_SNP [dm3] 2L_19299427_SNP [dm6]	C	G	1.024e^-4	0.753	SYNONYMOUS_CODING CG17564 UPSTREAM CG10750
X	4444204	X_4444204_INS [dm3] X_4550171_INS [dm6]	G	GCTTAGAGAACTCAGAGAAT...	1.025e^-4	0.753	UTR_3_PRIME CG11436 DOWNSTREAM CG15912 INTRON CR32773
2R	15166995	2R_15166995_SNP [dm3] 2R_19279490_SNP [dm6]	C	T	1.033e^-4	0.753	SYNONYMOUS_CODING rib	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18441958	3L_18441958_SNP [dm3] 3L_18448858_SNP [dm6]	A	T	1.036e^-4	0.753	INTERGENIC
X	14905255	X_14905255_SNP [dm3] X_15011222_SNP [dm6]	G	A	1.053e^-4	0.753	SYNONYMOUS_CODING hiw	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	8912365	2R_8912365_SNP [dm3] 2R_13024860_SNP [dm6]	A	C	1.061e^-4	0.753	INTERGENIC
X	15509970	X_15509970_SNP [dm3] X_15615937_SNP [dm6]	G	C	1.066e^-4	0.753	INTRON sog
2R	10201240	2R_10201240_SNP [dm3] 2R_14313735_SNP [dm6]	A	T	1.069e^-4	0.753	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9589305	3R_9589305_INS [dm3] 3R_13763583_INS [dm6]	G	GCTAG	1.069e^-4	0.753	UTR_3_PRIME CG34383	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	3305161	X_3305161_DEL [dm3] X_3411128_DEL [dm6]	TACCACAT	T	1.078e^-4	0.753	INTRON CR44999 & 1 other
2L	14459419	2L_14459419_SNP [dm3] 2L_14459419_SNP [dm6]	T	C	1.087e^-4	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
X	14922245	X_14922245_SNP [dm3] X_15028212_SNP [dm6]	A	T	1.095e^-4	0.753	INTRON hiw & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10714070	2L_10714070_SNP [dm3] 2L_10714070_SNP [dm6]	A	G	1.104e^-4	0.753	INTERGENIC
3L	8026508	3L_8026508_SNP [dm3] 3L_8033408_SNP [dm6]	A	T	1.105e^-4	0.753	INTRON nmo	TF binding site mE1_TFBS_HSA
2L	10708299	2L_10708299_SNP [dm3] 2L_10708299_SNP [dm6]	G	T	1.105e^-4	0.753	INTRON Lip2
2L	12392806	2L_12392806_INS [dm3] 2L_12392806_INS [dm6]	T	TT	1.113e^-4	0.753	INTRON bru-2
2R	16174144	2R_16174144_SNP [dm3] 2R_20286639_SNP [dm6]	A	G	1.117e^-4	0.753	SYNONYMOUS_CODING CG16868 UPSTREAM CG34199	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8366015	2L_8366015_SNP [dm3] 2L_8366015_SNP [dm6]	C	T	1.123e^-4	0.753	UPSTREAM Pp2A-29B DOWNSTREAM CSN8 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3L	1411632	3L_1411632_SNP [dm3] 3L_1411632_SNP [dm6]	G	T	1.127e^-4	0.753	SYNONYMOUS_CODING CG9168 INTRON Ptp61F	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	9902701	3L_9902701_SNP [dm3] 3L_9909601_SNP [dm6]	T	G	1.133e^-4	0.753	INTRON CG34356
3L	7948702	3L_7948702_SNP [dm3] 3L_7955602_SNP [dm6]	A	C	1.135e^-4	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	2725263	2R_2725263_SNP [dm3] 2R_6837758_SNP [dm6]	G	A	1.141e^-4	0.753	UTR_3_PRIME CG15236 DOWNSTREAM CG9445
2R	7120967	2R_7120967_SNP [dm3] 2R_11233462_SNP [dm6]	T	G	1.149e^-4	0.753	SYNONYMOUS_CODING CG13218 UPSTREAM metro & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	12544700	2L_12544700_INS [dm3] 2L_12544700_INS [dm6]	A	ACATA	1.152e^-4	0.753	DOWNSTREAM CR42746 INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	14913274	X_14913274_SNP [dm3] X_15019241_SNP [dm6]	T	A	1.153e^-4	0.753	INTRON hiw	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11988022	2L_11988022_SNP [dm3] 2L_11988022_SNP [dm6]	C	A	1.155e^-4	0.753	UTR_5_PRIME CG6686 UPSTREAM CG34163 DOWNSTREAM zuc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Ubx
X	17432590	X_17432590_SNP [dm3] X_17538557_SNP [dm6]	G	C	1.161e^-4	0.753	INTRON CG43658
2R	11170347	2R_11170347_SNP [dm3] 2R_15282842_SNP [dm6]	A	C	1.169e^-4	0.753	INTRON Trpm
X	15669005	X_15669005_SNP [dm3] X_15774972_SNP [dm6]	A	T	1.169e^-4	0.753	SYNONYMOUS_CODING CG43672
2L	8968391	2L_8968391_INS [dm3] 2L_8968391_INS [dm6]	A	ACATATTTATATAGATA...	1.175e^-4	0.753	INTRON CG18088
X	14903768	X_14903768_DEL [dm3] X_15009735_DEL [dm6]	CTGACAC	C	1.176e^-4	0.753	UTR_3_PRIME eag DOWNSTREAM hiw	TF binding site BDTNP1_TFBS_dl
2R	8484964	2R_8484964_SNP [dm3] 2R_12597459_SNP [dm6]	G	A	1.176e^-4	0.753	INTRON Amph
2R	12396107	2R_12396107_SNP [dm3] 2R_16508602_SNP [dm6]	G	A	1.184e^-4	0.753	INTRON Sema-2a
2L	19291932	2L_19291932_INS [dm3] 2L_19291932_INS [dm6]	A	ACA	1.186e^-4	0.753	INTERGENIC
3R	24088661	3R_24088661_SNP [dm3] 3R_28262939_SNP [dm6]	G	C	1.189e^-4	0.753	SYNONYMOUS_CODING CG43125 DOWNSTREAM CG43124
2R	2731778	2R_2731778_SNP [dm3] 2R_6844273_SNP [dm6]	T	C	1.189e^-4	0.753	INTERGENIC	TF binding site mE1_TFBS_sbb
3R	25938395	3R_25938395_SNP [dm3] 3R_30112673_SNP [dm6]	C	A	1.191e^-4	0.753	INTRON sima
X	14788637	X_14788637_DEL [dm3] X_14894604_DEL [dm6]	CTCAAGC	C	1.194e^-4	0.753	INTRON Flo2 & 1 other
2L	10713632	2L_10713632_SNP [dm3] 2L_10713632_SNP [dm6]	G	A	1.195e^-4	0.753	INTERGENIC
2R	6586641	2R_6586641_SNP [dm3] 2R_10699136_SNP [dm6]	T	C	1.205e^-4	0.753	INTRON stan
X	12820358	X_12820358_SNP [dm3] X_12926325_SNP [dm6]	T	A	1.205e^-4	0.753	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	15084696	X_15084696_SNP [dm3] X_15190663_SNP [dm6]	T	G	1.206e^-4	0.753	DOWNSTREAM CG43737 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	15083870	X_15083870_SNP [dm3] X_15189837_SNP [dm6]	T	C	1.210e^-4	0.753	UTR_3_PRIME CG43737
2L	11592497	2L_11592497_DEL [dm3] 2L_11592497_DEL [dm6]	CTCCCACAC	C	1.213e^-4	0.753	UPSTREAM Acp33A INTRON kek2	TF binding site mE1_TFBS_inv
2L	13120455	2L_13120455_SNP [dm3] 2L_13120455_SNP [dm6]	G	C	1.216e^-4	0.753	UTR_3_PRIME CG43050
X	8780562	X_8780562_DEL [dm3] X_8886529_DEL [dm6]	ATATA	A	1.220e^-4	0.753	INTRON Moe
3L	15770547	3L_15770547_SNP [dm3] 3L_15777447_SNP [dm6]	G	T	1.222e^-4	0.753	INTERGENIC
2L	13155533	2L_13155533_SNP [dm3] 2L_13155533_SNP [dm6]	G	T	1.222e^-4	0.753	INTERGENIC
X	18291046	X_18291046_SNP [dm3] X_18397013_SNP [dm6]	A	T	1.223e^-4	0.753	INTRON CG32549	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18291062	X_18291062_SNP [dm3] X_18397029_SNP [dm6]	C	G	1.223e^-4	0.753	INTRON CG32549	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18291063	X_18291063_SNP [dm3] X_18397030_SNP [dm6]	C	A	1.223e^-4	0.753	INTRON CG32549	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16362973	2L_16362973_SNP [dm3] 2L_16362973_SNP [dm6]	G	T	1.228e^-4	0.753	INTERGENIC
X	14474934	X_14474934_SNP [dm3] X_14580901_SNP [dm6]	T	C	1.230e^-4	0.753	SYNONYMOUS_CODING CG14414 INTRON CG14414	TF binding site BDTNP1_TFBS_dl
3L	4509331	3L_4509331_SNP [dm3] 3L_4509331_SNP [dm6]	G	T	1.237e^-4	0.753	UPSTREAM NT1 INTERGENIC
2L	10710749	2L_10710749_SNP [dm3] 2L_10710749_SNP [dm6]	T	A	1.239e^-4	0.753	DOWNSTREAM CR44407 INTERGENIC
3R	15372087	3R_15372087_SNP [dm3] 3R_19546365_SNP [dm6]	T	C	1.243e^-4	0.753	INTRON Dys
3L	867362	3L_867362_SNP [dm3] 3L_867362_SNP [dm6]	A	G	1.248e^-4	0.753	INTRON CG12502
X	15496926	X_15496926_SNP [dm3] X_15602893_SNP [dm6]	G	A	1.251e^-4	0.753	DOWNSTREAM sog INTERGENIC
2R	18205139	2R_18205139_SNP [dm3] 2R_22317634_SNP [dm6]	A	T	1.261e^-4	0.753	UPSTREAM Gp150 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	14085429	2L_14085429_SNP [dm3] 2L_14085429_SNP [dm6]	A	C	1.265e^-4	0.753	INTRON nAChRalpha5
2L	13155550	2L_13155550_SNP [dm3] 2L_13155550_SNP [dm6]	C	A	1.273e^-4	0.753	INTERGENIC
X	8925219	X_8925219_DEL [dm3] X_9031186_DEL [dm6]	TT	C	1.273e^-4	0.753	INTRON CR43836 & 1 other
X	18291043	X_18291043_SNP [dm3] X_18397010_SNP [dm6]	C	A	1.280e^-4	0.753	INTRON CG32549	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6749744	2L_6749744_SNP [dm3] 2L_6749744_SNP [dm6]	A	T	1.282e^-4	0.753	INTRON CG11221
3L	4697126	3L_4697126_SNP [dm3] 3L_4697126_SNP [dm6]	A	G	1.286e^-4	0.753	UPSTREAM CG13713 INTRON RhoGEF64C	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	7804295	2L_7804295_SNP [dm3] 2L_7804295_SNP [dm6]	A	G	1.288e^-4	0.753	UTR_3_PRIME cdc14 INTRON cdc14
2R	14655615	2R_14655615_SNP [dm3] 2R_18768110_SNP [dm6]	A	C	1.289e^-4	0.753	INTRON Mctp	TF binding site mE1_TFBS_chinmo
2L	10061983	2L_10061983_SNP [dm3] 2L_10061983_SNP [dm6]	T	C	1.291e^-4	0.753	INTRON Spn31A
2L	11383533	2L_11383533_SNP [dm3] 2L_11383533_SNP [dm6]	C	A	1.293e^-4	0.753	INTERGENIC	regulatory region REDfly_CRMs
3L	10299359	3L_10299359_SNP [dm3] 3L_10306259_SNP [dm6]	A	G	1.298e^-4	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	15155464	2L_15155464_SNP [dm3] 2L_15155464_SNP [dm6]	A	T	1.301e^-4	0.753	INTERGENIC
3L	8202090	3L_8202090_SNP [dm3] 3L_8208990_SNP [dm6]	T	A	1.306e^-4	0.753	DOWNSTREAM CG32364 INTERGENIC
X	16731851	X_16731851_SNP [dm3] X_16837818_SNP [dm6]	A	T	1.310e^-4	0.753	DOWNSTREAM RSG7 INTERGENIC
2R	19508732	2R_19508732_SNP [dm3] 2R_23621209_SNP [dm6]	T	A	1.313e^-4	0.753	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	10916739	2L_10916739_SNP [dm3] 2L_10916739_SNP [dm6]	G	T	1.314e^-4	0.753	DOWNSTREAM dpr2 INTERGENIC
3L	10597034	3L_10597034_SNP [dm3] 3L_10603934_SNP [dm6]	G	T	1.317e^-4	0.753	INTERGENIC
X	15776846	X_15776846_SNP [dm3] X_15882813_SNP [dm6]	A	G	1.348e^-4	0.769	INTRON tay
3L	12606096	3L_12606096_SNP [dm3] 3L_12612996_SNP [dm6]	T	G	1.363e^-4	0.775	INTRON caup	silencer mE1_HDAC_PRE
2R	18205775	2R_18205775_SNP [dm3] 2R_22318270_SNP [dm6]	G	A	1.372e^-4	0.776	UTR_5_PRIME Gp150 DOWNSTREAM CR44756 INTRON Gp150	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	7177825	2L_7177825_SNP [dm3] 2L_7177825_SNP [dm6]	G	C	1.386e^-4	0.776	DOWNSTREAM CR44613 INTERGENIC
X	13415483	X_13415483_SNP [dm3] X_13521450_SNP [dm6]	T	C	1.387e^-4	0.776	INTRON Neto
3L	10297964	3L_10297964_SNP [dm3] 3L_10304864_SNP [dm6]	A	G	1.390e^-4	0.776	INTERGENIC
2L	8292585	2L_8292585_DEL [dm3] 2L_8292585_DEL [dm6]	AA	A	1.391e^-4	0.776	INTRON Btk29A	TF binding site mE1_TFBS_cnc
3L	10596508	3L_10596508_SNP [dm3] 3L_10603408_SNP [dm6]	T	G	1.399e^-4	0.776	INTERGENIC
2L	8987147	2L_8987147_SNP [dm3] 2L_8987147_SNP [dm6]	G	A	1.399e^-4	0.776	SYNONYMOUS_CODING rost
2L	10659356	2L_10659356_SNP [dm3] 2L_10659356_SNP [dm6]	T	A	1.403e^-4	0.776	DOWNSTREAM CG45690 INTERGENIC
3L	10283149	3L_10283149_SNP [dm3] 3L_10290049_SNP [dm6]	C	T	1.407e^-4	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4133255	2L_4133255_SNP [dm3] 2L_4133255_SNP [dm6]	G	T	1.414e^-4	0.776	INTERGENIC
X	7126346	X_7126346_SNP [dm3] X_7232313_SNP [dm6]	T	A	1.414e^-4	0.776	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_chinmo
2R	18139070	2R_18139070_SNP [dm3] 2R_22251565_SNP [dm6]	C	A	1.420e^-4	0.776	INTRON dve
3L	10180049	3L_10180049_SNP [dm3] 3L_10186949_SNP [dm6]	G	A	1.420e^-4	0.776	UPSTREAM dpr10 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	2736102	2R_2736102_SNP [dm3] 2R_6848597_SNP [dm6]	G	A	1.423e^-4	0.776	INTERGENIC
3R	4953120	3R_4953120_SNP [dm3] 3R_9127398_SNP [dm6]	A	T	1.441e^-4	0.783	INTRON pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16543965	3L_16543965_SNP [dm3] 3L_16550865_SNP [dm6]	G	A	1.450e^-4	0.783	INTERGENIC
2R	13239118	2R_13239118_SNP [dm3] 2R_17351613_SNP [dm6]	C	T	1.467e^-4	0.783	INTRON mbl
2R	2738277	2R_2738277_SNP [dm3] 2R_6850772_SNP [dm6]	G	T	1.475e^-4	0.783	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	773132	3L_773132_SNP [dm3] 3L_773132_SNP [dm6]	C	A	1.484e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13344168	2L_13344168_SNP [dm3] 2L_13344168_SNP [dm6]	T	C	1.488e^-4	0.783	INTERGENIC
2L	3969182	2L_3969182_SNP [dm3] 2L_3969182_SNP [dm6]	A	G	1.489e^-4	0.783	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	16017252	2L_16017252_SNP [dm3] 2L_16017252_SNP [dm6]	T	A	1.493e^-4	0.783	INTRON beat-Ic
2L	8106716	2L_8106716_SNP [dm3] 2L_8106716_SNP [dm6]	G	A	1.500e^-4	0.783	INTRON Bsg
2R	1916948	2R_1916948_SNP [dm3] 2R_6029443_SNP [dm6]	G	A	1.501e^-4	0.783	SYNONYMOUS_CODING SCAP
2R	13364232	2R_13364232_SNP [dm3] 2R_17476727_SNP [dm6]	T	A	1.503e^-4	0.783	UPSTREAM CG6520 DOWNSTREAM CG43110 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	8590277	2L_8590277_SNP [dm3] 2L_8590277_SNP [dm6]	A	C	1.505e^-4	0.783	DOWNSTREAM CR43855 INTRON Sema-1a
X	14912165	X_14912165_SNP [dm3] X_15018132_SNP [dm6]	G	A	1.511e^-4	0.783	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
2L	20439236	2L_20439236_DEL [dm3] 2L_20439236_DEL [dm6]	TT	T	1.516e^-4	0.783	UPSTREAM CR43607 INTRON CG31688	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3626863	2L_3626863_SNP [dm3] 2L_3626863_SNP [dm6]	G	C	1.516e^-4	0.783	SYNONYMOUS_CODING for INTRON for	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	13934572	X_13934572_SNP [dm3] X_14040539_SNP [dm6]	T	G	1.516e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15446686	X_15446686_MNP [dm3] X_15552653_MNP [dm6]	TCA	ATG	1.519e^-4	0.783	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	18461100	2R_18461100_SNP [dm3] 2R_22573595_SNP [dm6]	T	A	1.519e^-4	0.783	INTRON dnr1
3L	9796967	3L_9796967_SNP [dm3] 3L_9803867_SNP [dm6]	C	T	1.520e^-4	0.783	SYNONYMOUS_CODING Ilp4 INTRON CG32052	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17519298	X_17519298_SNP [dm3] X_17625265_SNP [dm6]	A	G	1.530e^-4	0.783	UTR_3_PRIME stas INTRON stas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	8517892	3R_8517892_SNP [dm3] 3R_12692170_SNP [dm6]	C	T	1.534e^-4	0.783	SYNONYMOUS_CODING CG31347 UPSTREAM Su_fu_ INTRON Arp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12465793	3L_12465793_SNP [dm3] 3L_12472693_SNP [dm6]	T	C	1.540e^-4	0.783	INTRON CG10616
2L	16107579	2L_16107579_SNP [dm3] 2L_16107579_SNP [dm6]	C	T	1.540e^-4	0.783	INTERGENIC
2R	2726885	2R_2726885_SNP [dm3] 2R_6839380_SNP [dm6]	A	G	1.540e^-4	0.783	UPSTREAM CG9445 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8568506	3L_8568506_SNP [dm3] 3L_8575406_SNP [dm6]	C	T	1.548e^-4	0.783	SYNONYMOUS_CODING CG6638 DOWNSTREAM rhea	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7327041	2L_7327041_SNP [dm3] 2L_7327041_SNP [dm6]	C	T	1.548e^-4	0.783	INTERGENIC
X	3872674	X_3872674_SNP [dm3] X_3978641_SNP [dm6]	C	T	1.550e^-4	0.783	INTERGENIC
2R	12035665	2R_12035665_SNP [dm3] 2R_16148160_SNP [dm6]	T	C	1.553e^-4	0.783	SYNONYMOUS_CODING Ext2 DOWNSTREAM CG10731	TF binding site mE1_TFBS_sens
X	14922943	X_14922943_SNP [dm3] X_15028910_SNP [dm6]	G	A	1.558e^-4	0.784	INTRON hiw & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	18192880	2R_18192880_SNP [dm3] 2R_22305375_SNP [dm6]	C	G	1.573e^-4	0.789	INTRON wdp
2L	8980650	2L_8980650_SNP [dm3] 2L_8980650_SNP [dm6]	C	A	1.593e^-4	0.796	UPSTREAM CG18662 INTRON CG13101
2L	11377083	2L_11377083_SNP [dm3] 2L_11377083_SNP [dm6]	C	T	1.596e^-4	0.796	INTERGENIC	regulatory region REDfly_CRMs
2L	13428904	2L_13428904_SNP [dm3] 2L_13428904_SNP [dm6]	T	C	1.600e^-4	0.796	INTRON CG42784
2R	1877446	2R_1877446_SNP [dm3] 2R_5989941_SNP [dm6]	T	A	1.614e^-4	0.801	INTRON Src42A
X	16735580	X_16735580_SNP [dm3] X_16841547_SNP [dm6]	T	G	1.619e^-4	0.801	INTRON RSG7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16735488	X_16735488_DEL [dm3] X_16841455_DEL [dm6]	AATAATCAAAGCGCATTTAA...	G	1.623e^-4	0.801	INTRON RSG7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14366784	2L_14366784_SNP [dm3] 2L_14366784_SNP [dm6]	C	A	1.629e^-4	0.802	UTR_3_PRIME spel1	TF binding site mE1_TFBS_cad
3L	2117171	3L_2117171_SNP [dm3] 3L_2117171_SNP [dm6]	A	C	1.634e^-4	0.802	DOWNSTREAM zormin INTERGENIC
3R	13632119	3R_13632119_SNP [dm3] 3R_17806397_SNP [dm6]	C	A	1.638e^-4	0.802	NON_SYNONYMOUS_CODING CG17801
3R	24088657	3R_24088657_SNP [dm3] 3R_28262935_SNP [dm6]	G	C	1.642e^-4	0.802	NON_SYNONYMOUS_CODING CG43125 DOWNSTREAM CG43124
X	16607838	X_16607838_SNP [dm3] X_16713805_SNP [dm6]	C	A	1.654e^-4	0.803	SYNONYMOUS_CODING CG13008 DOWNSTREAM CG34325	TF binding site mE1_TFBS_cad
X	14409345	X_14409345_INS [dm3] X_14515312_INS [dm6]	T	TATAAT	1.655e^-4	0.803	INTERGENIC
2R	18146927	2R_18146927_SNP [dm3] 2R_22259422_SNP [dm6]	T	C	1.658e^-4	0.803	INTRON dve	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	12004498	2R_12004498_SNP [dm3] 2R_16116993_SNP [dm6]	T	C	1.667e^-4	0.803	UTR_3_PRIME Asph UPSTREAM Jhedup
3L	12316391	3L_12316391_SNP [dm3] 3L_12323291_SNP [dm6]	A	T	1.671e^-4	0.803	INTERGENIC
2R	18205319	2R_18205319_SNP [dm3] 2R_22317814_SNP [dm6]	C	T	1.673e^-4	0.803	UTR_5_PRIME Gp150 UPSTREAM Gp150 INTRON Gp150	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	12109373	2L_12109373_SNP [dm3] 2L_12109373_SNP [dm6]	T	G	1.674e^-4	0.803	UPSTREAM Phae1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	15083780	X_15083780_SNP [dm3] X_15189747_SNP [dm6]	G	A	1.688e^-4	0.806	UTR_3_PRIME CG43737
3L	10599601	3L_10599601_SNP [dm3] 3L_10606501_SNP [dm6]	C	G	1.691e^-4	0.806	INTERGENIC
2R	11856722	2R_11856722_SNP [dm3] 2R_15969217_SNP [dm6]	C	A	1.692e^-4	0.806	NON_SYNONYMOUS_CODING Strn-Mlck UPSTREAM Strn-Mlck
2R	18200714	2R_18200714_SNP [dm3] 2R_22313209_SNP [dm6]	G	T	1.698e^-4	0.806	INTRON CR44758
2R	16737046	2R_16737046_DEL [dm3] 2R_20849541_DEL [dm6]	GG	G	1.704e^-4	0.807	DOWNSTREAM CG9993 INTRON CG17999	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17989287	2R_17989287_INS [dm3] 2R_22101782_INS [dm6]	T	TTTG	1.713e^-4	0.807	INTERGENIC
2L	14962538	2L_14962538_SNP [dm3] 2L_14962538_SNP [dm6]	T	C	1.715e^-4	0.807	INTRON CG42313
X	15082597	X_15082597_SNP [dm3] X_15188564_SNP [dm6]	G	A	1.716e^-4	0.807	UTR_3_PRIME CG43737
X	12679498	X_12679498_SNP [dm3] X_12785465_SNP [dm6]	T	A	1.728e^-4	0.807	UPSTREAM CG32647 DOWNSTREAM Pde9 INTERGENIC	TF binding site mE1_TFBS_kn
2R	16168404	2R_16168404_SNP [dm3] 2R_20280899_SNP [dm6]	A	T	1.732e^-4	0.807	UTR_5_PRIME CG9090 UPSTREAM CG9090 DOWNSTREAM CG16868 INTRON CG9090
2R	18893757	2R_18893757_SNP [dm3] 2R_23006234_SNP [dm6]	T	C	1.737e^-4	0.807	INTRON twi
2R	18214035	2R_18214035_SNP [dm3] 2R_22326530_SNP [dm6]	T	C	1.742e^-4	0.807	SYNONYMOUS_CODING Gp150	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	8254705	2L_8254705_SNP [dm3] 2L_8254705_SNP [dm6]	G	A	1.747e^-4	0.807	INTRON CG8086	TF binding site BDTNP1_TFBS_twi
2R	18147951	2R_18147951_SNP [dm3] 2R_22260446_SNP [dm6]	A	G	1.749e^-4	0.807	INTRON dve
3L	10283292	3L_10283292_SNP [dm3] 3L_10290192_SNP [dm6]	G	C	1.749e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8925590	2L_8925590_DEL [dm3] 2L_8925590_DEL [dm6]	CCCCATCTGTATC...	C	1.751e^-4	0.807	INTRON CG34398	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16363232	2L_16363232_INS [dm3] 2L_16363232_INS [dm6]	A	AA	1.756e^-4	0.807	INTERGENIC
X	15076784	X_15076784_SNP [dm3] X_15182751_SNP [dm6]	A	T	1.761e^-4	0.807	INTRON CG43737
2L	17520098	2L_17520098_SNP [dm3] 2L_17520098_SNP [dm6]	A	G	1.778e^-4	0.813	DOWNSTREAM CG15143 INTRON Dhc36C
2L	16636684	2L_16636684_SNP [dm3] 2L_16636684_SNP [dm6]	C	T	1.788e^-4	0.815	INTRON CG42389
3L	7948738	3L_7948738_SNP [dm3] 3L_7955638_SNP [dm6]	T	C	1.801e^-4	0.815	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1715186	2R_1715186_DEL [dm3] 2R_5827681_DEL [dm6]	ACACTCCTATAGT...	A	1.809e^-4	0.815	INTRON dpr12
2R	18511350	2R_18511350_SNP [dm3] 2R_22623845_SNP [dm6]	G	A	1.812e^-4	0.815	INTRON CG33143
2R	18113298	2R_18113298_SNP [dm3] 2R_22225793_SNP [dm6]	T	A	1.819e^-4	0.815	INTRON Oatp58Dc
2R	16168537	2R_16168537_SNP [dm3] 2R_20281032_SNP [dm6]	T	G	1.819e^-4	0.815	UTR_5_PRIME CG9090 UPSTREAM CG9090 DOWNSTREAM CG16868
2R	8448257	2R_8448257_SNP [dm3] 2R_12560752_SNP [dm6]	T	C	1.822e^-4	0.815	SYNONYMOUS_CODING fra	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17519069	X_17519069_SNP [dm3] X_17625036_SNP [dm6]	A	G	1.828e^-4	0.815	UTR_3_PRIME stas INTRON stas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	14655425	2R_14655425_INS [dm3] 2R_18767920_INS [dm6]	T	TATAGTA	1.831e^-4	0.815	INTRON Mctp
2R	15053632	2R_15053632_SNP [dm3] 2R_19166127_SNP [dm6]	A	G	1.839e^-4	0.815	INTRON CG10737
3L	12831486	3L_12831486_SNP [dm3] 3L_12838386_SNP [dm6]	C	T	1.849e^-4	0.815	INTRON CG10960
X	18600986	X_18600986_SNP [dm3] X_18706953_SNP [dm6]	T	G	1.853e^-4	0.815	DOWNSTREAM CCKLR-17D1 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	15496864	X_15496864_SNP [dm3] X_15602831_SNP [dm6]	G	T	1.854e^-4	0.815	DOWNSTREAM sog INTERGENIC
2R	19508726	2R_19508726_SNP [dm3] 2R_23621203_SNP [dm6]	G	A	1.854e^-4	0.815	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	2117172	3L_2117172_SNP [dm3] 3L_2117172_SNP [dm6]	C	G	1.855e^-4	0.815	DOWNSTREAM zormin INTERGENIC
3L	9178101	3L_9178101_DEL [dm3] 3L_9185001_DEL [dm6]	TT	C	1.856e^-4	0.815	INTERGENIC
3L	835171	3L_835171_SNP [dm3] 3L_835171_SNP [dm6]	C	T	1.858e^-4	0.815	SYNONYMOUS_CODING CG42553 UPSTREAM CG42554	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	18522145	2L_18522145_SNP [dm3] 2L_18522145_SNP [dm6]	A	G	1.860e^-4	0.815	INTRON CG10211
3R	13632293	3R_13632293_SNP [dm3] 3R_17806571_SNP [dm6]	T	A	1.871e^-4	0.815	NON_SYNONYMOUS_CODING CG17801 DOWNSTREAM CG7357
X	3873502	X_3873502_SNP [dm3] X_3979469_SNP [dm6]	C	T	1.876e^-4	0.815	INTERGENIC
3L	775429	3L_775429_SNP [dm3] 3L_775429_SNP [dm6]	A	G	1.876e^-4	0.815	INTERGENIC	TF binding site mE1_TFBS_inv
X	7967740	X_7967740_SNP [dm3] X_8073707_SNP [dm6]	T	C	1.878e^-4	0.815	SYNONYMOUS_CODING Upf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17678503	X_17678503_SNP [dm3] X_17784470_SNP [dm6]	A	T	1.882e^-4	0.815	INTERGENIC
2L	6699676	2L_6699676_SNP [dm3] 2L_6699676_SNP [dm6]	C	T	1.886e^-4	0.815	INTRON Tsp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	14391477	3R_14391477_SNP [dm3] 3R_18565755_SNP [dm6]	T	C	1.890e^-4	0.815	UPSTREAM CG43210 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	11855117	2R_11855117_SNP [dm3] 2R_15967612_SNP [dm6]	C	T	1.904e^-4	0.816	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2L	13110792	2L_13110792_INS [dm3] 2L_13110792_INS [dm6]	T	TTA	1.905e^-4	0.816	INTERGENIC
2L	3550285	2L_3550285_SNP [dm3] 2L_3550285_SNP [dm6]	C	A	1.905e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	5303563	3R_5303563_SNP [dm3] 3R_9477841_SNP [dm6]	A	C	1.912e^-4	0.816	INTRON CG16779
2L	3391573	2L_3391573_SNP [dm3] 2L_3391573_SNP [dm6]	C	T	1.915e^-4	0.816	INTERGENIC
2R	7324218	2R_7324218_SNP [dm3] 2R_11436713_SNP [dm6]	C	T	1.925e^-4	0.819	INTRON CG7777
3L	10600575	3L_10600575_SNP [dm3] 3L_10607475_SNP [dm6]	C	G	1.929e^-4	0.819	INTERGENIC
X	3417084	X_3417084_SNP [dm3] X_3523051_SNP [dm6]	C	A	1.944e^-4	0.82	DOWNSTREAM CR44999 INTRON CG32791
2L	12109702	2L_12109702_SNP [dm3] 2L_12109702_SNP [dm6]	C	G	1.947e^-4	0.82	SYNONYMOUS_CODING Phae1 UPSTREAM Rab6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8365982	2L_8365982_INS [dm3] 2L_8365982_INS [dm6]	A	ATGCTAC	1.957e^-4	0.82	UPSTREAM Pp2A-29B DOWNSTREAM CSN8 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
X	3124706	X_3124706_SNP [dm3] X_3230673_SNP [dm6]	C	T	1.960e^-4	0.82	INTRON dnc
2R	7324347	2R_7324347_SNP [dm3] 2R_11436842_SNP [dm6]	G	T	1.973e^-4	0.82	INTRON CG7777
2L	18443704	2L_18443704_SNP [dm3] 2L_18443704_SNP [dm6]	T	G	1.990e^-4	0.82	UPSTREAM RpS26 DOWNSTREAM ncm INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	13591145	2L_13591145_SNP [dm3] 2L_13591145_SNP [dm6]	A	G	2.006e^-4	0.82	INTRON kuz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	18463192	2L_18463192_SNP [dm3] 2L_18463192_SNP [dm6]	G	A	2.008e^-4	0.82	INTRON let-7-C
X	15060324	X_15060324_SNP [dm3] X_15166291_SNP [dm6]	T	A	2.009e^-4	0.82	INTERGENIC
X	15060333	X_15060333_SNP [dm3] X_15166300_SNP [dm6]	A	G	2.009e^-4	0.82	INTERGENIC
2L	10659248	2L_10659248_SNP [dm3] 2L_10659248_SNP [dm6]	T	C	2.019e^-4	0.82	DOWNSTREAM CG45690 INTERGENIC
X	17519128	X_17519128_SNP [dm3] X_17625095_SNP [dm6]	C	T	2.029e^-4	0.82	UTR_3_PRIME stas INTRON stas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	7389545	3L_7389545_SNP [dm3] 3L_7396445_SNP [dm6]	G	A	2.038e^-4	0.82	UTR_5_PRIME CG32379 DOWNSTREAM CG8563	TF binding site mE1_TFBS_HSA
X	1884059	X_1884059_SNP [dm3] X_1990026_SNP [dm6]	T	A	2.040e^-4	0.82	INTRON Hr4	TF binding site mE1_TFBS_chinmo
2L	13410954	2L_13410954_SNP [dm3] 2L_13410954_SNP [dm6]	G	A	2.041e^-4	0.82	UTR_3_PRIME CG7110 DOWNSTREAM Vm34Ca
2R	18148296	2R_18148296_SNP [dm3] 2R_22260791_SNP [dm6]	A	G	2.041e^-4	0.82	INTRON dve
2L	7943384	2L_7943384_SNP [dm3] 2L_7943384_SNP [dm6]	C	T	2.041e^-4	0.82	INTRON Snoo
2R	12005250	2R_12005250_SNP [dm3] 2R_16117745_SNP [dm6]	T	C	2.042e^-4	0.82	DOWNSTREAM Asph INTRON Jhedup	TF binding site BDTNP1_TFBS_twi mE1_TFBS_ftz_f1
2R	18113477	2R_18113477_SNP [dm3] 2R_22225972_SNP [dm6]	C	G	2.044e^-4	0.82	SYNONYMOUS_CODING Oatp58Dc
2R	3391294	2R_3391294_SNP [dm3] 2R_7503789_SNP [dm6]	A	G	2.048e^-4	0.82	INTRON didum	TF binding site mE1_TFBS_cad
3R	15099890	3R_15099890_DEL [dm3] 3R_19274168_DEL [dm6]	TAAAGTTAA	T	2.050e^-4	0.82	INTERGENIC
2L	18503490	2L_18503490_SNP [dm3] 2L_18503490_SNP [dm6]	C	T	2.055e^-4	0.82	INTRON kon
2L	7653697	2L_7653697_SNP [dm3] 2L_7653697_SNP [dm6]	C	T	2.060e^-4	0.82	INTRON Slob
3L	15352542	3L_15352542_SNP [dm3] 3L_15359442_SNP [dm6]	T	G	2.066e^-4	0.82	INTERGENIC
2R	18511385	2R_18511385_SNP [dm3] 2R_22623880_SNP [dm6]	C	A	2.068e^-4	0.82	INTRON CG33143
3R	9874633	3R_9874633_SNP [dm3] 3R_14048911_SNP [dm6]	C	A	2.070e^-4	0.82	INTERGENIC
2L	7795981	2L_7795981_SNP [dm3] 2L_7795981_SNP [dm6]	A	G	2.071e^-4	0.82	UPSTREAM LKR DOWNSTREAM Herp EXON CR44825
3L	10282973	3L_10282973_SNP [dm3] 3L_10289873_SNP [dm6]	A	G	2.086e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	14491868	3L_14491868_SNP [dm3] 3L_14498768_SNP [dm6]	G	A	2.096e^-4	0.82	INTRON bbg	TF binding site mE1_TFBS_inv
3R	13632222	3R_13632222_SNP [dm3] 3R_17806500_SNP [dm6]	G	T	2.098e^-4	0.82	NON_SYNONYMOUS_CODING CG17801 DOWNSTREAM CG7357
3L	10300670	3L_10300670_SNP [dm3] 3L_10307570_SNP [dm6]	T	C	2.104e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9157285	2R_9157285_SNP [dm3] 2R_13269780_SNP [dm6]	T	A	2.107e^-4	0.82	INTRON Dh31-R
2R	9768219	2R_9768219_SNP [dm3] 2R_13880714_SNP [dm6]	C	T	2.110e^-4	0.82	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
X	18169724	X_18169724_SNP [dm3] X_18275691_SNP [dm6]	T	C	2.111e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18113305	2R_18113305_SNP [dm3] 2R_22225800_SNP [dm6]	T	A	2.112e^-4	0.82	INTRON Oatp58Dc
2R	14222099	2R_14222099_SNP [dm3] 2R_18334594_SNP [dm6]	C	G	2.121e^-4	0.82	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	9439054	3L_9439054_SNP [dm3] 3L_9445954_SNP [dm6]	A	T	2.122e^-4	0.82	NON_SYNONYMOUS_CODING CG33926 UPSTREAM CG3529	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5908044	3L_5908044_DEL [dm3] 3L_5914944_DEL [dm6]	CATTAGC	C	2.127e^-4	0.82	INTRON CG13288
3L	10418985	3L_10418985_SNP [dm3] 3L_10425885_SNP [dm6]	G	A	2.132e^-4	0.82	INTERGENIC
2L	1204003	2L_1204003_SNP [dm3] 2L_1204003_SNP [dm6]	T	A	2.132e^-4	0.82	UPSTREAM CG14342 INTERGENIC
2L	13046396	2L_13046396_SNP [dm3] 2L_13046396_SNP [dm6]	G	A	2.134e^-4	0.82	INTRON CG9932
2R	8213163	2R_8213163_SNP [dm3] 2R_12325658_SNP [dm6]	T	C	2.139e^-4	0.82	SYNONYMOUS_CODING CG8841 UPSTREAM garz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10995243	3R_10995243_SNP [dm3] 3R_15169521_SNP [dm6]	G	A	2.142e^-4	0.82	INTRON Gyc88E
X	12249508	X_12249508_SNP [dm3] X_12355475_SNP [dm6]	A	G	2.145e^-4	0.82	INTERGENIC
2R	16174289	2R_16174289_SNP [dm3] 2R_20286784_SNP [dm6]	A	G	2.146e^-4	0.82	UTR_5_PRIME CG16868 UPSTREAM CG34199	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	6245255	X_6245255_DEL [dm3] X_6351222_DEL [dm6]	TC	T	2.147e^-4	0.82	UPSTREAM CG3446 INTRON kdn
2L	11917775	2L_11917775_SNP [dm3] 2L_11917775_SNP [dm6]	A	C	2.148e^-4	0.82	INTRON Pde1c
X	14913011	X_14913011_SNP [dm3] X_15018978_SNP [dm6]	G	T	2.151e^-4	0.82	INTRON hiw	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18205239	2R_18205239_SNP [dm3] 2R_22317734_SNP [dm6]	C	T	2.152e^-4	0.82	UTR_5_PRIME Gp150 UPSTREAM Gp150	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	3968736	2L_3968736_SNP [dm3] 2L_3968736_SNP [dm6]	C	A	2.155e^-4	0.82	INTRON fred	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	14913900	X_14913900_DEL [dm3] X_15019867_DEL [dm6]	TTTCTTGTAGGTAAT...	T	2.168e^-4	0.82	INTRON hiw	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11751393	2R_11751393_SNP [dm3] 2R_15863888_SNP [dm6]	T	G	2.170e^-4	0.82	DOWNSTREAM Rif1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	2738245	2R_2738245_SNP [dm3] 2R_6850740_SNP [dm6]	C	A	2.180e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	5301846	3R_5301846_SNP [dm3] 3R_9476124_SNP [dm6]	G	C	2.190e^-4	0.82	INTRON CG16779	TF binding site mE1_TFBS_cad
2L	15864747	2L_15864747_SNP [dm3] 2L_15864747_SNP [dm6]	G	A	2.191e^-4	0.82	DOWNSTREAM CG42792 INTERGENIC
2R	11178976	2R_11178976_SNP [dm3] 2R_15291471_SNP [dm6]	T	A	2.202e^-4	0.82	UPSTREAM Trpm INTRON Trpm
2R	2716739	2R_2716739_SNP [dm3] 2R_6829234_SNP [dm6]	G	A	2.207e^-4	0.82	INTRON CG15236	TF binding site mE1_TFBS_chinmo
2L	13922476	2L_13922476_SNP [dm3] 2L_13922476_SNP [dm6]	C	T	2.212e^-4	0.82	INTRON Ance-3 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	11382743	2L_11382743_SNP [dm3] 2L_11382743_SNP [dm6]	G	A	2.218e^-4	0.82	INTERGENIC	regulatory region REDfly_CRMs
2R	12396035	2R_12396035_SNP [dm3] 2R_16508530_SNP [dm6]	T	C	2.221e^-4	0.82	INTRON Sema-2a
2R	8350035	2R_8350035_DEL [dm3] 2R_12462530_DEL [dm6]	TT	T	2.224e^-4	0.82	INTRON Lac	TF binding site BDTNP1_TFBS_dl
X	14919306	X_14919306_SNP [dm3] X_15025273_SNP [dm6]	C	A	2.225e^-4	0.82	INTRON hiw & 1 other	TF binding site BDTNP1_TFBS_dl
2L	1204005	2L_1204005_SNP [dm3] 2L_1204005_SNP [dm6]	A	T	2.228e^-4	0.82	UPSTREAM CG14342 INTERGENIC
3R	14894973	3R_14894973_SNP [dm3] 3R_19069251_SNP [dm6]	C	T	2.231e^-4	0.82	INTRON cdi
X	3328220	X_3328220_SNP [dm3] X_3434187_SNP [dm6]	G	C	2.233e^-4	0.82	DOWNSTREAM CG14269 INTRON CR44999 & 1 other
X	18658347	X_18658347_SNP [dm3] X_18764314_SNP [dm6]	C	T	2.236e^-4	0.82	DOWNSTREAM CCKLR-17D3 INTERGENIC
X	3870722	X_3870722_SNP [dm3] X_3976689_SNP [dm6]	C	T	2.240e^-4	0.82	INTERGENIC
2L	7088807	2L_7088807_SNP [dm3] 2L_7088807_SNP [dm6]	G	T	2.246e^-4	0.82	INTERGENIC
3L	14998967	3L_14998967_SNP [dm3] 3L_15005867_SNP [dm6]	A	T	2.253e^-4	0.82	INTRON Reck
2L	18443724	2L_18443724_SNP [dm3] 2L_18443724_SNP [dm6]	G	A	2.255e^-4	0.82	UPSTREAM RpS26 DOWNSTREAM ncm INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11793414	2L_11793414_SNP [dm3] 2L_11793414_SNP [dm6]	C	A	2.261e^-4	0.82	SYNONYMOUS_CODING CG14937 DOWNSTREAM crol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11793417	2L_11793417_SNP [dm3] 2L_11793417_SNP [dm6]	G	A	2.261e^-4	0.82	SYNONYMOUS_CODING CG14937 DOWNSTREAM crol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	15505086	X_15505086_SNP [dm3] X_15611053_SNP [dm6]	T	G	2.266e^-4	0.82	INTRON sog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13590969	2L_13590969_SNP [dm3] 2L_13590969_SNP [dm6]	A	C	2.269e^-4	0.82	INTRON kuz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	13046378	2L_13046378_SNP [dm3] 2L_13046378_SNP [dm6]	A	G	2.269e^-4	0.82	INTRON CG9932
3R	13632216	3R_13632216_SNP [dm3] 3R_17806494_SNP [dm6]	G	A	2.275e^-4	0.82	SYNONYMOUS_CODING CG17801 DOWNSTREAM CG7357
2L	17520090	2L_17520090_INS [dm3] 2L_17520090_INS [dm6]	T	TGTCTT	2.278e^-4	0.82	DOWNSTREAM CG15143 INTRON Dhc36C
2L	17520104	2L_17520104_SNP [dm3] 2L_17520104_SNP [dm6]	A	T	2.278e^-4	0.82	DOWNSTREAM CG15143 INTRON Dhc36C
3R	26806562	3R_26806562_SNP [dm3] 3R_30980840_SNP [dm6]	T	G	2.281e^-4	0.82	INTRON 5-HT7
2R	5209095	2R_5209095_SNP [dm3] 2R_9321590_SNP [dm6]	A	G	2.282e^-4	0.82	INTRON CG13954 & 1 other
2L	13428832	2L_13428832_SNP [dm3] 2L_13428832_SNP [dm6]	G	T	2.287e^-4	0.82	INTRON CG42784
2L	19301359	2L_19301359_SNP [dm3] 2L_19301359_SNP [dm6]	A	C	2.293e^-4	0.82	INTRON CG10750
2R	19202960	2R_19202960_SNP [dm3] 2R_23315437_SNP [dm6]	C	T	2.295e^-4	0.82	INTERGENIC
2L	10895317	2L_10895317_SNP [dm3] 2L_10895317_SNP [dm6]	T	C	2.304e^-4	0.82	EXON CR44491
2L	1203545	2L_1203545_INS [dm3] 2L_1203545_INS [dm6]	T	TGCCAT	2.309e^-4	0.82	UPSTREAM CG14342 INTERGENIC
3L	9068019	3L_9068019_INS [dm3] 3L_9074919_INS [dm6]	T	TT	2.312e^-4	0.82	DOWNSTREAM CG4942 INTRON Tequila	TF binding site mE1_TFBS_cad
3L	10180024	3L_10180024_SNP [dm3] 3L_10186924_SNP [dm6]	T	A	2.313e^-4	0.82	UPSTREAM dpr10 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	7389686	3L_7389686_SNP [dm3] 3L_7396586_SNP [dm6]	C	T	2.323e^-4	0.82	SYNONYMOUS_CODING CG32379 DOWNSTREAM CG8563	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8026526	3L_8026526_SNP [dm3] 3L_8033426_SNP [dm6]	C	T	2.337e^-4	0.82	INTRON nmo	TF binding site mE1_TFBS_HSA
2R	5236162	2R_5236162_SNP [dm3] 2R_9348657_SNP [dm6]	G	A	2.340e^-4	0.82	UTR_3_PRIME Or45a INTRON CG13954 & 1 other
3R	27165624	3R_27165624_SNP [dm3] 3R_31339902_SNP [dm6]	C	T	2.358e^-4	0.82	INTRON CG34347
2R	16168535	2R_16168535_SNP [dm3] 2R_20281030_SNP [dm6]	A	T	2.359e^-4	0.82	UTR_5_PRIME CG9090 UPSTREAM CG9090 DOWNSTREAM CG16868
X	14661387	X_14661387_SNP [dm3] X_14767354_SNP [dm6]	A	C	2.359e^-4	0.82	INTERGENIC
2R	18893747	2R_18893747_SNP [dm3] 2R_23006224_SNP [dm6]	C	A	2.362e^-4	0.82	INTRON twi
2R	18200785	2R_18200785_SNP [dm3] 2R_22313280_SNP [dm6]	G	A	2.367e^-4	0.82	INTRON CR44758
2L	18463259	2L_18463259_SNP [dm3] 2L_18463259_SNP [dm6]	A	G	2.367e^-4	0.82	INTRON let-7-C
2R	16737040	2R_16737040_SNP [dm3] 2R_20849535_SNP [dm6]	A	T	2.375e^-4	0.82	DOWNSTREAM CG9993 INTRON CG17999	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17717674	3R_17717674_SNP [dm3] 3R_21891952_SNP [dm6]	T	C	2.380e^-4	0.82	INTRON CG6678	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10315356	3L_10315356_SNP [dm3] 3L_10322256_SNP [dm6]	T	G	2.380e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	11166287	3L_11166287_SNP [dm3] 3L_11173187_SNP [dm6]	G	T	2.382e^-4	0.82	UPSTREAM CG14142 DOWNSTREAM CG7616 INTERGENIC
X	14917177	X_14917177_SNP [dm3] X_15023144_SNP [dm6]	T	C	2.383e^-4	0.82	INTRON hiw
2L	18538516	2L_18538516_DEL [dm3] 2L_18538516_DEL [dm6]	ACA	A	2.386e^-4	0.82	INTRON Pde11	TF binding site mE1_TFBS_HSA
2R	13078877	2R_13078877_SNP [dm3] 2R_17191372_SNP [dm6]	G	A	2.394e^-4	0.82	INTERGENIC
3R	26689933	3R_26689933_SNP [dm3] 3R_30864211_SNP [dm6]	G	A	2.394e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_cad
2R	18139069	2R_18139069_SNP [dm3] 2R_22251564_SNP [dm6]	G	C	2.395e^-4	0.82	INTRON dve
2R	6875086	2R_6875086_SNP [dm3] 2R_10987581_SNP [dm6]	G	C	2.396e^-4	0.82	INTRON luna
2R	5565107	2R_5565107_SNP [dm3] 2R_9677602_SNP [dm6]	C	T	2.401e^-4	0.82	INTRON Mmp2	TF binding site BDTNP1_TFBS_dl
2R	17989244	2R_17989244_SNP [dm3] 2R_22101739_SNP [dm6]	G	A	2.416e^-4	0.821	INTERGENIC
3R	9862147	3R_9862147_SNP [dm3] 3R_14036425_SNP [dm6]	C	A	2.422e^-4	0.821	UPSTREAM CG9922 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
2L	5938070	2L_5938070_SNP [dm3] 2L_5938070_SNP [dm6]	A	G	2.423e^-4	0.821	UTR_3_PRIME dsf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8704906	3L_8704906_SNP [dm3] 3L_8711806_SNP [dm6]	T	A	2.424e^-4	0.821	INTERGENIC	regulatory region REDfly_CRMs
X	4444142	X_4444142_SNP [dm3] X_4550109_SNP [dm6]	A	T	2.434e^-4	0.821	UTR_3_PRIME CG11436 DOWNSTREAM CG15912 INTRON CR32773
X	4444211	X_4444211_SNP [dm3] X_4550178_SNP [dm6]	G	A	2.438e^-4	0.821	UTR_3_PRIME CG11436 DOWNSTREAM CG15912 INTRON CR32773
2L	10794501	2L_10794501_DEL [dm3] 2L_10794501_DEL [dm6]	GG	G	2.442e^-4	0.821	INTRON CG31869
X	14620726	X_14620726_SNP [dm3] X_14726693_SNP [dm6]	G	T	2.446e^-4	0.821	INTRON NetB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	15023469	X_15023469_SNP [dm3] X_15129436_SNP [dm6]	G	C	2.447e^-4	0.821	INTRON drd
2L	16363132	2L_16363132_SNP [dm3] 2L_16363132_SNP [dm6]	A	C	2.458e^-4	0.821	INTERGENIC
2R	11751392	2R_11751392_SNP [dm3] 2R_15863887_SNP [dm6]	G	T	2.463e^-4	0.821	DOWNSTREAM Rif1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19520847	X_19520847_INS [dm3] X_19626814_INS [dm6]	C	CACTTCC	2.467e^-4	0.821	UTR_3_PRIME e_y_3 DOWNSTREAM CG14212
X	2933926	X_2933926_SNP [dm3] X_3039893_SNP [dm6]	G	C	2.471e^-4	0.821	INTRON kirre
2L	13988943	2L_13988943_SNP [dm3] 2L_13988943_SNP [dm6]	G	T	2.473e^-4	0.821	INTRON rk
X	15516836	X_15516836_INS [dm3] X_15622803_INS [dm6]	T	TCATTTCGGGTGGCT...	2.480e^-4	0.821	INTRON sog	TF binding site BDTNP1_TFBS_dl
3L	9804691	3L_9804691_SNP [dm3] 3L_9811591_SNP [dm6]	A	G	2.482e^-4	0.821	INTERGENIC
X	15024079	X_15024079_SNP [dm3] X_15130046_SNP [dm6]	G	A	2.482e^-4	0.821	INTRON drd
X	14703620	X_14703620_SNP [dm3] X_14809587_SNP [dm6]	C	A	2.483e^-4	0.821	INTRON rut
X	14661370	X_14661370_SNP [dm3] X_14767337_SNP [dm6]	A	T	2.491e^-4	0.823	INTERGENIC
2R	12047545	2R_12047545_SNP [dm3] 2R_16160040_SNP [dm6]	C	T	2.505e^-4	0.824	INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18954608	2R_18954608_SNP [dm3] 2R_23067085_SNP [dm6]	T	C	2.508e^-4	0.824	UTR_3_PRIME PPO3 UPSTREAM l_2_k09913	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	7650134	2L_7650134_SNP [dm3] 2L_7650134_SNP [dm6]	T	C	2.512e^-4	0.824	INTRON Slob
X	15446692	X_15446692_SNP [dm3] X_15552659_SNP [dm6]	T	C	2.513e^-4	0.824	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12547385	2L_12547385_SNP [dm3] 2L_12547385_SNP [dm6]	A	C	2.527e^-4	0.826	UPSTREAM bun INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	20021813	2R_20021813_SNP [dm3] 2R_24134290_SNP [dm6]	C	A	2.531e^-4	0.826	UPSTREAM tamo DOWNSTREAM CG4065 INTRON Zfrp8	TF binding site BDTNP1_TFBS_dl
2R	7508869	2R_7508869_SNP [dm3] 2R_11621364_SNP [dm6]	T	A	2.537e^-4	0.826	SYNONYMOUS_CODING CG9005
3L	13012109	3L_13012109_SNP [dm3] 3L_13019009_SNP [dm6]	A	G	2.539e^-4	0.826	NON_SYNONYMOUS_CODING ste14 DOWNSTREAM AdenoK EXON CR45445
X	17576183	X_17576183_SNP [dm3] X_17682150_SNP [dm6]	G	C	2.541e^-4	0.826	INTRON chas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11530167	2L_11530167_SNP [dm3] 2L_11530167_SNP [dm6]	G	A	2.561e^-4	0.828	SYNONYMOUS_CODING CG31706
2L	11374763	2L_11374763_SNP [dm3] 2L_11374763_SNP [dm6]	A	T	2.564e^-4	0.828	INTERGENIC	regulatory region REDfly_CRMs
X	14907766	X_14907766_SNP [dm3] X_15013733_SNP [dm6]	C	T	2.575e^-4	0.828	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
3L	8026504	3L_8026504_SNP [dm3] 3L_8033404_SNP [dm6]	A	C	2.581e^-4	0.828	INTRON nmo	TF binding site mE1_TFBS_HSA
3L	8026513	3L_8026513_SNP [dm3] 3L_8033413_SNP [dm6]	A	T	2.581e^-4	0.828	INTRON nmo	TF binding site mE1_TFBS_HSA
X	15083785	X_15083785_INS [dm3] X_15189752_INS [dm6]	T	TT	2.583e^-4	0.828	UTR_3_PRIME CG43737
2L	9166949	2L_9166949_SNP [dm3] 2L_9166949_SNP [dm6]	A	G	2.588e^-4	0.828	UTR_5_PRIME tai UPSTREAM CG9586	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2R	16743179	2R_16743179_SNP [dm3] 2R_20855674_SNP [dm6]	T	C	2.591e^-4	0.828	INTERGENIC
2R	16738701	2R_16738701_SNP [dm3] 2R_20851196_SNP [dm6]	A	G	2.597e^-4	0.828	SYNONYMOUS_CODING CG9993	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	12547353	2L_12547353_SNP [dm3] 2L_12547353_SNP [dm6]	G	T	2.606e^-4	0.828	UPSTREAM bun INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4133305	2L_4133305_SNP [dm3] 2L_4133305_SNP [dm6]	T	G	2.611e^-4	0.828	INTERGENIC
2R	17975396	2R_17975396_SNP [dm3] 2R_22087891_SNP [dm6]	A	C	2.611e^-4	0.828	UPSTREAM CG13502 INTRON CG13502	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	7508836	2R_7508836_SNP [dm3] 2R_11621331_SNP [dm6]	C	G	2.619e^-4	0.828	SYNONYMOUS_CODING CG9005	TF binding site mE1_TFBS_chinmo
2L	3594129	2L_3594129_SNP [dm3] 2L_3594129_SNP [dm6]	G	A	2.623e^-4	0.828	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8855630	2L_8855630_SNP [dm3] 2L_8855630_SNP [dm6]	C	T	2.624e^-4	0.828	INTERGENIC
2L	11504378	2L_11504378_SNP [dm3] 2L_11504378_SNP [dm6]	T	G	2.624e^-4	0.828	INTRON spz4
2R	2961024	2R_2961024_SNP [dm3] 2R_7073519_SNP [dm6]	A	G	2.625e^-4	0.828	NON_SYNONYMOUS_CODING CG12831
2L	9166947	2L_9166947_SNP [dm3] 2L_9166947_SNP [dm6]	A	T	2.626e^-4	0.828	UTR_5_PRIME tai UPSTREAM CG9586	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2L	8324431	2L_8324431_SNP [dm3] 2L_8324431_SNP [dm6]	T	A	2.647e^-4	0.831	INTRON CG7781
3L	14009340	3L_14009340_SNP [dm3] 3L_14016240_SNP [dm6]	G	A	2.657e^-4	0.831	SYNONYMOUS_CODING upSET	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	4778967	X_4778967_SNP [dm3] X_4884934_SNP [dm6]	T	C	2.659e^-4	0.831	INTRON CG42594
2R	8350195	2R_8350195_SNP [dm3] 2R_12462690_SNP [dm6]	T	C	2.660e^-4	0.831	INTRON Lac
2R	12004519	2R_12004519_SNP [dm3] 2R_16117014_SNP [dm6]	A	T	2.666e^-4	0.831	UPSTREAM Jhedup DOWNSTREAM Asph INTERGENIC
2R	20184166	2R_20184166_SNP [dm3] 2R_24296643_SNP [dm6]	T	C	2.666e^-4	0.831	SYNONYMOUS_CODING CG3394	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13186276	2R_13186276_SNP [dm3] 2R_17298771_SNP [dm6]	T	C	2.666e^-4	0.831	INTRON mbl
2R	9768312	2R_9768312_SNP [dm3] 2R_13880807_SNP [dm6]	C	T	2.674e^-4	0.831	SYNONYMOUS_CODING shot
3L	12648611	3L_12648611_SNP [dm3] 3L_12655511_SNP [dm6]	T	C	2.682e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4133296	2L_4133296_SNP [dm3] 2L_4133296_SNP [dm6]	A	C	2.684e^-4	0.831	INTERGENIC
2L	4133300	2L_4133300_SNP [dm3] 2L_4133300_SNP [dm6]	G	A	2.686e^-4	0.831	INTERGENIC
X	8154519	X_8154519_SNP [dm3] X_8260486_SNP [dm6]	T	C	2.698e^-4	0.833	INTRON CG1632
2R	14434210	2R_14434210_SNP [dm3] 2R_18546705_SNP [dm6]	A	G	2.700e^-4	0.833	INTRON Rgk2
X	21838350	X_21838350_SNP [dm3] X_22436515_SNP [dm6]	A	G	2.704e^-4	0.833	INTERGENIC
2R	20062990	2R_20062990_INS [dm3] 2R_24175467_INS [dm6]	C	CC	2.714e^-4	0.833	SPLICE_SITE_REGION Nop60B UPSTREAM snoRNA:Psi18S-1820 INTRON Nop60B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	13365012	2R_13365012_SNP [dm3] 2R_17477507_SNP [dm6]	G	T	2.715e^-4	0.833	UPSTREAM veil DOWNSTREAM CG43110 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	7439324	2R_7439324_SNP [dm3] 2R_11551819_SNP [dm6]	G	C	2.719e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17989292	2R_17989292_DEL [dm3] 2R_22101787_DEL [dm6]	TTT	AA	2.725e^-4	0.834	INTERGENIC
2R	15557567	2R_15557567_SNP [dm3] 2R_19670062_SNP [dm6]	A	T	2.729e^-4	0.834	UPSTREAM hrg & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
2R	18143409	2R_18143409_SNP [dm3] 2R_22255904_SNP [dm6]	G	T	2.741e^-4	0.835	INTRON dve	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	9411381	2R_9411381_SNP [dm3] 2R_13523876_SNP [dm6]	A	G	2.744e^-4	0.835	DOWNSTREAM CG13331 INTRON Vmat
2R	13179202	2R_13179202_SNP [dm3] 2R_17291697_SNP [dm6]	C	T	2.761e^-4	0.839	INTRON mbl
3L	3895541	3L_3895541_SNP [dm3] 3L_3895541_SNP [dm6]	A	G	2.774e^-4	0.84	SYNONYMOUS_CODING Gr63a DOWNSTREAM Fie	TF binding site mE1_TFBS_sens
X	17519151	X_17519151_SNP [dm3] X_17625118_SNP [dm6]	T	A	2.783e^-4	0.84	UTR_3_PRIME stas INTRON stas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	3536893	2L_3536893_SNP [dm3] 2L_3536893_SNP [dm6]	G	A	2.789e^-4	0.84	UPSTREAM CR44308 INTERGENIC
X	4080357	X_4080357_DEL [dm3] X_4186324_DEL [dm6]	GG	G	2.793e^-4	0.84	INTRON Fas2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10493735	3L_10493735_SNP [dm3] 3L_10500635_SNP [dm6]	C	G	2.799e^-4	0.84	INTRON A2bp1
3L	16959414	3L_16959414_SNP [dm3] 3L_16966314_SNP [dm6]	G	T	2.802e^-4	0.84	SYNONYMOUS_CODING Nc73EF INTRON Nc73EF
3R	25193183	3R_25193183_SNP [dm3] 3R_29367461_SNP [dm6]	C	G	2.804e^-4	0.84	INTERGENIC
2R	817234	2R_817234_SNP [dm3] 2R_4929729_SNP [dm6]	G	C	2.818e^-4	0.84	INTRON Ir41a
2R	8417553	2R_8417553_SNP [dm3] 2R_12530048_SNP [dm6]	A	T	2.823e^-4	0.84	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	14913187	X_14913187_SNP [dm3] X_15019154_SNP [dm6]	C	T	2.825e^-4	0.84	INTRON hiw	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12665860	X_12665860_SNP [dm3] X_12771827_SNP [dm6]	T	A	2.827e^-4	0.84	UTR_3_PRIME CG3812 DOWNSTREAM CG32647 & 1 other
2R	11812118	2R_11812118_SNP [dm3] 2R_15924613_SNP [dm6]	C	T	2.835e^-4	0.84	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9830918	3R_9830918_SNP [dm3] 3R_14005196_SNP [dm6]	G	A	2.837e^-4	0.84	INTRON rdx
2L	20634426	2L_20634426_SNP [dm3] 2L_20634426_SNP [dm6]	C	G	2.845e^-4	0.84	UPSTREAM CG17472 INTERGENIC
2R	18511403	2R_18511403_SNP [dm3] 2R_22623898_SNP [dm6]	T	A	2.851e^-4	0.84	INTRON CG33143
3L	16909118	3L_16909118_SNP [dm3] 3L_16916018_SNP [dm6]	A	C	2.858e^-4	0.84	UPSTREAM Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	10281365	3L_10281365_SNP [dm3] 3L_10288265_SNP [dm6]	G	A	2.874e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3626544	2L_3626544_SNP [dm3] 2L_3626544_SNP [dm6]	G	A	2.875e^-4	0.84	SYNONYMOUS_CODING for INTRON for	TF binding site mE1_TFBS_chinmo
3L	10283117	3L_10283117_SNP [dm3] 3L_10290017_SNP [dm6]	T	G	2.884e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19693444	2R_19693444_SNP [dm3] 2R_23805921_SNP [dm6]	T	A	2.886e^-4	0.84	UTR_3_PRIME CG5539 DOWNSTREAM Ssrp & 1 other INTRON CG13561
X	17519255	X_17519255_SNP [dm3] X_17625222_SNP [dm6]	A	G	2.898e^-4	0.84	UTR_3_PRIME stas INTRON stas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	14807476	2R_14807476_SNP [dm3] 2R_18919971_SNP [dm6]	T	G	2.900e^-4	0.84	INTRON sano
3L	9026311	3L_9026311_INS [dm3] 3L_9033211_INS [dm6]	T	TA	2.900e^-4	0.84	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	8590608	2L_8590608_SNP [dm3] 2L_8590608_SNP [dm6]	A	T	2.901e^-4	0.84	INTRON Sema-1a & 1 other
X	5758727	X_5758727_SNP [dm3] X_5864694_SNP [dm6]	T	C	2.903e^-4	0.84	UTR_3_PRIME CG43137
2R	8417577	2R_8417577_SNP [dm3] 2R_12530072_SNP [dm6]	T	A	2.904e^-4	0.84	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	16548069	3L_16548069_SNP [dm3] 3L_16554969_SNP [dm6]	T	A	2.910e^-4	0.84	INTERGENIC
2R	18202114	2R_18202114_SNP [dm3] 2R_22314609_SNP [dm6]	G	A	2.915e^-4	0.84	INTRON CR44758
3L	1401893	3L_1401893_SNP [dm3] 3L_1401893_SNP [dm6]	T	A	2.918e^-4	0.84	DOWNSTREAM tRNA:E4:62Ad & 2 others INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
X	14913354	X_14913354_SNP [dm3] X_15019321_SNP [dm6]	G	A	2.918e^-4	0.84	INTRON hiw	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10719647	2L_10719647_SNP [dm3] 2L_10719647_SNP [dm6]	T	C	2.920e^-4	0.84	INTERGENIC
X	8323871	X_8323871_INS [dm3] X_8429838_INS [dm6]	A	AATATGTTTA	2.922e^-4	0.84	UTR_3_PRIME Trf2
2L	4891094	2L_4891094_SNP [dm3] 2L_4891094_SNP [dm6]	G	C	2.924e^-4	0.84	SYNONYMOUS_CODING CG15625 DOWNSTREAM CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18213365	2R_18213365_SNP [dm3] 2R_22325860_SNP [dm6]	T	C	2.929e^-4	0.84	SYNONYMOUS_CODING Gp150	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	19314086	2L_19314086_SNP [dm3] 2L_19314086_SNP [dm6]	C	T	2.930e^-4	0.84	INTERGENIC	TF binding site mE1_TFBS_cad
2L	3550469	2L_3550469_SNP [dm3] 2L_3550469_SNP [dm6]	G	T	2.937e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2R	9972495	2R_9972495_SNP [dm3] 2R_14084990_SNP [dm6]	A	G	2.942e^-4	0.84	INTRON Prosap	TF binding site mE1_TFBS_bab1
3L	1513949	3L_1513949_SNP [dm3] 3L_1513949_SNP [dm6]	T	C	2.943e^-4	0.84	INTRON Psa & 1 other	TF binding site BDTNP1_TFBS_da
2L	16168433	2L_16168433_SNP [dm3] 2L_16168433_SNP [dm6]	C	G	2.944e^-4	0.84	UTR_5_PRIME Ca-alpha1D INTRON Ca-alpha1D
X	14681327	X_14681327_SNP [dm3] X_14787294_SNP [dm6]	T	C	2.947e^-4	0.84	UPSTREAM Ag5r DOWNSTREAM rut EXON CR45522
2L	10895324	2L_10895324_SNP [dm3] 2L_10895324_SNP [dm6]	C	T	2.950e^-4	0.84	EXON CR44491
2L	3441803	2L_3441803_SNP [dm3] 2L_3441803_SNP [dm6]	G	A	2.953e^-4	0.84	INTERGENIC
X	15446594	X_15446594_DEL [dm3] X_15552561_DEL [dm6]	TAGTACGT	T	2.961e^-4	0.841	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25401053	3R_25401053_SNP [dm3] 3R_29575331_SNP [dm6]	G	A	2.968e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10717289	2L_10717289_SNP [dm3] 2L_10717289_SNP [dm6]	T	G	2.970e^-4	0.842	INTERGENIC
X	16015617	X_16015617_SNP [dm3] X_16121584_SNP [dm6]	T	C	2.981e^-4	0.842	SYNONYMOUS_CODING disco-r	TF binding site mE1_TFBS_chinmo
3L	10301051	3L_10301051_SNP [dm3] 3L_10307951_SNP [dm6]	C	T	2.991e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10253373	3L_10253373_SNP [dm3] 3L_10260273_SNP [dm6]	C	A	2.996e^-4	0.842	INTERGENIC
X	14910322	X_14910322_SNP [dm3] X_15016289_SNP [dm6]	A	G	3.009e^-4	0.842	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
3L	2911145	3L_2911145_SNP [dm3] 3L_2911145_SNP [dm6]	C	A	3.010e^-4	0.842	INTRON Shab
2R	19693405	2R_19693405_SNP [dm3] 2R_23805882_SNP [dm6]	G	A	3.019e^-4	0.842	UTR_3_PRIME CG5539 DOWNSTREAM Ssrp INTRON CG13561	TF binding site mE1_TFBS_chinmo
2L	9507554	2L_9507554_SNP [dm3] 2L_9507554_SNP [dm6]	C	A	3.028e^-4	0.842	INTRON CG33298
2L	9507614	2L_9507614_SNP [dm3] 2L_9507614_SNP [dm6]	A	G	3.028e^-4	0.842	INTRON CG33298
3L	18897412	3L_18897412_SNP [dm3] 3L_18904312_SNP [dm6]	T	G	3.029e^-4	0.842	SYNONYMOUS_CODING CSN1b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19281746	2L_19281746_SNP [dm3] 2L_19281746_SNP [dm6]	G	C	3.032e^-4	0.842	INTERGENIC
X	14911066	X_14911066_SNP [dm3] X_15017033_SNP [dm6]	C	T	3.037e^-4	0.842	SYNONYMOUS_CODING hiw	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	5446791	2R_5446791_DEL [dm3] 2R_9559286_DEL [dm6]	AGAAATA	A	3.041e^-4	0.842	UPSTREAM Or45b EXON CR45281
3L	7987324	3L_7987324_SNP [dm3] 3L_7994224_SNP [dm6]	C	A	3.049e^-4	0.842	INTRON nmo	TF binding site mE1_TFBS_cad
2R	18205635	2R_18205635_SNP [dm3] 2R_22318130_SNP [dm6]	G	A	3.054e^-4	0.842	UPSTREAM Gp150 DOWNSTREAM CR44756 INTRON Gp150	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	24088645	3R_24088645_SNP [dm3] 3R_28262923_SNP [dm6]	C	T	3.058e^-4	0.842	NON_SYNONYMOUS_CODING CG43125 DOWNSTREAM CG43124
X	18994235	X_18994235_SNP [dm3] X_19100202_SNP [dm6]	A	G	3.060e^-4	0.842	INTERGENIC
2R	18954609	2R_18954609_SNP [dm3] 2R_23067086_SNP [dm6]	T	C	3.063e^-4	0.842	UTR_3_PRIME PPO3 UPSTREAM l_2_k09913	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	18218892	2R_18218892_SNP [dm3] 2R_22331387_SNP [dm6]	C	T	3.064e^-4	0.842	SYNONYMOUS_CODING T3dh UPSTREAM pgc INTRON pgc
2L	3537133	2L_3537133_SNP [dm3] 2L_3537133_SNP [dm6]	A	T	3.073e^-4	0.842	UPSTREAM CR44308 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4250931	2L_4250931_SNP [dm3] 2L_4250931_SNP [dm6]	A	G	3.079e^-4	0.842	INTERGENIC	TF binding site mE1_TFBS_inv
2L	19529082	2L_19529082_SNP [dm3] 2L_19529082_SNP [dm6]	T	C	3.083e^-4	0.842	UPSTREAM CG10165 INTRON CG10165 & 1 other
3L	1556023	3L_1556023_INS [dm3] 3L_1556023_INS [dm6]	T	TT	3.089e^-4	0.842	DOWNSTREAM Cct2 INTRON CG12099	TF binding site mE1_TFBS_cad
3L	9252312	3L_9252312_SNP [dm3] 3L_9259212_SNP [dm6]	T	C	3.093e^-4	0.842	INTRON GluRIB	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	4079086	X_4079086_DEL [dm3] X_4185053_DEL [dm6]	GAAG	G	3.098e^-4	0.842	INTRON Fas2
2L	11700839	2L_11700839_DEL [dm3] 2L_11700839_DEL [dm6]	GTGA	G	3.099e^-4	0.842	INTERGENIC
2L	14335558	2L_14335558_SNP [dm3] 2L_14335558_SNP [dm6]	T	C	3.100e^-4	0.842	INTRON CG33090
2R	7525995	2R_7525995_SNP [dm3] 2R_11638490_SNP [dm6]	C	T	3.100e^-4	0.842	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3626842	2L_3626842_SNP [dm3] 2L_3626842_SNP [dm6]	A	G	3.103e^-4	0.842	SYNONYMOUS_CODING for INTRON for	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18538511	2L_18538511_SNP [dm3] 2L_18538511_SNP [dm6]	A	C	3.104e^-4	0.842	INTRON Pde11	TF binding site mE1_TFBS_HSA
2L	8983306	2L_8983306_SNP [dm3] 2L_8983306_SNP [dm6]	C	T	3.110e^-4	0.842	INTRON CG13101
2R	3578682	2R_3578682_SNP [dm3] 2R_7691177_SNP [dm6]	C	A	3.111e^-4	0.842	INTRON CG1399	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10282966	3L_10282966_SNP [dm3] 3L_10289866_SNP [dm6]	A	G	3.117e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13632243	3R_13632243_SNP [dm3] 3R_17806521_SNP [dm6]	A	C	3.119e^-4	0.842	NON_SYNONYMOUS_CODING CG17801 DOWNSTREAM CG7357
2R	8484995	2R_8484995_SNP [dm3] 2R_12597490_SNP [dm6]	A	G	3.125e^-4	0.842	INTRON Amph
X	3872687	X_3872687_SNP [dm3] X_3978654_SNP [dm6]	T	A	3.137e^-4	0.842	INTERGENIC
2L	14962559	2L_14962559_SNP [dm3] 2L_14962559_SNP [dm6]	T	A	3.145e^-4	0.842	INTRON CG42313
2L	1203990	2L_1203990_SNP [dm3] 2L_1203990_SNP [dm6]	T	C	3.146e^-4	0.842	UPSTREAM CG14342 INTERGENIC
3L	9793484	3L_9793484_SNP [dm3] 3L_9800384_SNP [dm6]	C	T	3.146e^-4	0.842	UTR_3_PRIME Ilp2 DOWNSTREAM Ilp3 INTRON CG32052
X	15771832	X_15771832_SNP [dm3] X_15877799_SNP [dm6]	A	C	3.149e^-4	0.842	SYNONYMOUS_CODING tay	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18205780	2R_18205780_SNP [dm3] 2R_22318275_SNP [dm6]	C	T	3.150e^-4	0.842	START_GAINED Gp150 UTR_5_PRIME Gp150 DOWNSTREAM CR44756 INTRON Gp150	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	10180182	3L_10180182_SNP [dm3] 3L_10187082_SNP [dm6]	T	C	3.157e^-4	0.842	UPSTREAM dpr10 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	3550228	2L_3550228_DEL [dm3] 2L_3550228_DEL [dm6]	ATATTG	A	3.170e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14596230	2L_14596230_SNP [dm3] 2L_14596230_SNP [dm6]	A	G	3.181e^-4	0.842	INTERGENIC
3L	10283014	3L_10283014_SNP [dm3] 3L_10289914_SNP [dm6]	G	A	3.182e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13188706	2R_13188706_SNP [dm3] 2R_17301201_SNP [dm6]	T	C	3.184e^-4	0.842	INTRON mbl
2R	18893755	2R_18893755_SNP [dm3] 2R_23006232_SNP [dm6]	C	T	3.192e^-4	0.842	INTRON twi
2L	13716069	2L_13716069_SNP [dm3] 2L_13716069_SNP [dm6]	T	C	3.197e^-4	0.842	INTRON CG31814
2R	9886065	2R_9886065_SNP [dm3] 2R_13998560_SNP [dm6]	G	T	3.197e^-4	0.842	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	3618313	2R_3618313_SNP [dm3] 2R_7730808_SNP [dm6]	G	A	3.205e^-4	0.842	INTRON CG18812
X	16821209	X_16821209_SNP [dm3] X_16927176_SNP [dm6]	T	C	3.207e^-4	0.842	INTRON CG4928
3L	16489586	3L_16489586_SNP [dm3] 3L_16496486_SNP [dm6]	A	G	3.212e^-4	0.842	UTR_3_PRIME CG33158 UPSTREAM CG42514 INTRON CG43373
2L	6745107	2L_6745107_SNP [dm3] 2L_6745107_SNP [dm6]	G	A	3.224e^-4	0.842	SPLICE_SITE_REGION CG31910 SYNONYMOUS_CODING CG31910 DOWNSTREAM snoRNA:Me28S-G2743 INTRON CG11221	TF binding site mE1_TFBS_sens
2L	15553271	2L_15553271_SNP [dm3] 2L_15553271_SNP [dm6]	G	T	3.235e^-4	0.842	INTRON kek3
3L	8603790	3L_8603790_SNP [dm3] 3L_8610690_SNP [dm6]	A	G	3.239e^-4	0.842	INTRON CG6282
2L	12416938	2L_12416938_SNP [dm3] 2L_12416938_SNP [dm6]	G	A	3.245e^-4	0.842	INTRON vir-1
2L	14962537	2L_14962537_SNP [dm3] 2L_14962537_SNP [dm6]	C	G	3.248e^-4	0.842	INTRON CG42313
2R	2737285	2R_2737285_SNP [dm3] 2R_6849780_SNP [dm6]	G	T	3.249e^-4	0.842	INTERGENIC
2L	11509822	2L_11509822_SNP [dm3] 2L_11509822_SNP [dm6]	T	C	3.255e^-4	0.842	SYNONYMOUS_CODING CG6509 UTR_3_PRIME CG6509
X	15497107	X_15497107_SNP [dm3] X_15603074_SNP [dm6]	A	G	3.261e^-4	0.842	DOWNSTREAM sog INTERGENIC
2R	8294542	2R_8294542_SNP [dm3] 2R_12407037_SNP [dm6]	G	T	3.274e^-4	0.842	UTR_3_PRIME Cpr49Af UPSTREAM Cpr49Ag DOWNSTREAM Cpr49Af
3R	24166035	3R_24166035_SNP [dm3] 3R_28340313_SNP [dm6]	C	T	3.283e^-4	0.842	UPSTREAM Moca-cyp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	8417547	2R_8417547_SNP [dm3] 2R_12530042_SNP [dm6]	A	T	3.285e^-4	0.842	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8417554	2R_8417554_SNP [dm3] 2R_12530049_SNP [dm6]	T	A	3.285e^-4	0.842	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	2685974	X_2685974_SNP [dm3] X_2791941_SNP [dm6]	G	A	3.286e^-4	0.842	SYNONYMOUS_CODING w INTRON kirre	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	8486008	2R_8486008_SNP [dm3] 2R_12598503_SNP [dm6]	T	C	3.289e^-4	0.842	INTRON Amph
2R	8632501	2R_8632501_SNP [dm3] 2R_12744996_SNP [dm6]	T	G	3.291e^-4	0.842	INTRON CG42663	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10282969	3L_10282969_INS [dm3] 3L_10289869_INS [dm6]	T	TCTT	3.292e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13716051	2L_13716051_SNP [dm3] 2L_13716051_SNP [dm6]	G	A	3.293e^-4	0.842	INTRON CG31814
2L	12297953	2L_12297953_SNP [dm3] 2L_12297953_SNP [dm6]	C	G	3.293e^-4	0.842	INTRON aret	TF binding site mE1_TFBS_inv
2R	6947606	2R_6947606_SNP [dm3] 2R_11060101_SNP [dm6]	A	G	3.295e^-4	0.842	INTRON luna
X	15446660	X_15446660_SNP [dm3] X_15552627_SNP [dm6]	T	A	3.297e^-4	0.842	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	18200786	2R_18200786_SNP [dm3] 2R_22313281_SNP [dm6]	T	G	3.305e^-4	0.842	INTRON CR44758
3L	11150944	3L_11150944_SNP [dm3] 3L_11157844_SNP [dm6]	G	T	3.311e^-4	0.842	INTRON CG32082	TF binding site BDTNP1_TFBS_prd
X	14922405	X_14922405_SNP [dm3] X_15028372_SNP [dm6]	C	T	3.312e^-4	0.842	INTRON hiw & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18463243	2L_18463243_SNP [dm3] 2L_18463243_SNP [dm6]	A	C	3.322e^-4	0.842	INTRON let-7-C
2R	7322767	2R_7322767_SNP [dm3] 2R_11435262_SNP [dm6]	A	C	3.333e^-4	0.842	UPSTREAM CG7777 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_kn mE1_TFBS_ttk
3L	16735148	3L_16735148_SNP [dm3] 3L_16742048_SNP [dm6]	A	G	3.338e^-4	0.842	INTERGENIC
2L	19294954	2L_19294954_SNP [dm3] 2L_19294954_SNP [dm6]	A	G	3.348e^-4	0.842	INTERGENIC
2L	18213303	2L_18213303_DEL [dm3] 2L_18213303_DEL [dm6]	AGCAAG	A	3.350e^-4	0.842	INTRON CG42750
2R	18213868	2R_18213868_SNP [dm3] 2R_22326363_SNP [dm6]	T	C	3.351e^-4	0.842	INTRON Gp150	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	4450758	2L_4450758_SNP [dm3] 2L_4450758_SNP [dm6]	C	T	3.356e^-4	0.842	INTRON CG15439	TF binding site mE1_TFBS_cad
X	19171081	X_19171081_SNP [dm3] X_19277048_SNP [dm6]	T	A	3.357e^-4	0.842	UPSTREAM CG32537 & 1 other DOWNSTREAM CG8028 INTERGENIC
2L	10698416	2L_10698416_DEL [dm3] 2L_10698416_DEL [dm6]	AA	A	3.362e^-4	0.842	UPSTREAM CG7300 DOWNSTREAM CR44181 & 1 other INTERGENIC	TF binding site mE1_TFBS_ftz_f1
2R	793017	2R_793017_SNP [dm3] 2R_4905512_SNP [dm6]	G	C	3.367e^-4	0.842	INTRON CG44102
X	19520777	X_19520777_SNP [dm3] X_19626744_SNP [dm6]	C	T	3.368e^-4	0.842	UTR_3_PRIME e_y_3 DOWNSTREAM CG14212
2R	18213434	2R_18213434_SNP [dm3] 2R_22325929_SNP [dm6]	C	T	3.369e^-4	0.842	SYNONYMOUS_CODING Gp150	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12499225	3L_12499225_SNP [dm3] 3L_12506125_SNP [dm6]	C	T	3.373e^-4	0.842	SYNONYMOUS_CODING CG10654 DOWNSTREAM vih	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	772300	3L_772300_SNP [dm3] 3L_772300_SNP [dm6]	G	C	3.375e^-4	0.842	INTERGENIC	TF binding site mE1_TFBS_sens
2L	11522134	2L_11522134_SNP [dm3] 2L_11522134_SNP [dm6]	G	A	3.380e^-4	0.842	SYNONYMOUS_CODING CG43153 UPSTREAM CG14930 DOWNSTREAM CG14929 & 1 other
2R	6947625	2R_6947625_SNP [dm3] 2R_11060120_SNP [dm6]	C	G	3.388e^-4	0.842	INTRON luna
X	8763152	X_8763152_SNP [dm3] X_8869119_SNP [dm6]	A	G	3.396e^-4	0.842	INTRON CG12075	TF binding site mE1_TFBS_chinmo
2R	15684978	2R_15684978_SNP [dm3] 2R_19797473_SNP [dm6]	A	G	3.405e^-4	0.842	INTERGENIC
2R	7495173	2R_7495173_SNP [dm3] 2R_11607668_SNP [dm6]	C	A	3.406e^-4	0.842	INTRON tou	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10556252	2R_10556252_INS [dm3] 2R_14668747_INS [dm6]	C	CTAC	3.407e^-4	0.842
2R	13365007	2R_13365007_SNP [dm3] 2R_17477502_SNP [dm6]	A	T	3.408e^-4	0.842	UPSTREAM veil DOWNSTREAM CG43110 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	13386183	3R_13386183_SNP [dm3] 3R_17560461_SNP [dm6]	C	A	3.408e^-4	0.842	INTRON Hmx	TF binding site BDTNP1_TFBS_dl
X	15446159	X_15446159_SNP [dm3] X_15552126_SNP [dm6]	C	T	3.409e^-4	0.842	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11509801	2L_11509801_SNP [dm3] 2L_11509801_SNP [dm6]	A	G	3.412e^-4	0.842	SYNONYMOUS_CODING CG6509 UTR_3_PRIME CG6509
2L	13590878	2L_13590878_SNP [dm3] 2L_13590878_SNP [dm6]	G	T	3.421e^-4	0.842	INTRON kuz	TF binding site BDTNP1_TFBS_da
X	17527156	X_17527156_SNP [dm3] X_17633123_SNP [dm6]	T	C	3.432e^-4	0.842	DOWNSTREAM CG8289 INTRON CG5703	TF binding site mE1_TFBS_sens
2R	15686199	2R_15686199_SNP [dm3] 2R_19798694_SNP [dm6]	T	C	3.434e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13364622	2R_13364622_SNP [dm3] 2R_17477117_SNP [dm6]	G	T	3.435e^-4	0.842	UPSTREAM CG6520 DOWNSTREAM CG43110 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	10283245	3L_10283245_SNP [dm3] 3L_10290145_SNP [dm6]	A	C	3.443e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11428386	2L_11428386_SNP [dm3] 2L_11428386_SNP [dm6]	T	C	3.447e^-4	0.842	INTERGENIC
2L	18538544	2L_18538544_SNP [dm3] 2L_18538544_SNP [dm6]	T	C	3.460e^-4	0.842	INTRON Pde11	TF binding site mE1_TFBS_HSA
2L	15128419	2L_15128419_SNP [dm3] 2L_15128419_SNP [dm6]	A	C	3.460e^-4	0.842	UPSTREAM CR44706 INTERGENIC
2R	14572427	2R_14572427_SNP [dm3] 2R_18684922_SNP [dm6]	G	C	3.460e^-4	0.842	SYNONYMOUS_CODING CG44433 UPSTREAM CG44434 & 1 other	TF binding site mE1_TFBS_sens
3L	9081305	3L_9081305_SNP [dm3] 3L_9088205_SNP [dm6]	C	G	3.463e^-4	0.842	NON_SYNONYMOUS_CODING Tequila INTRON Tequila	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13365020	2R_13365020_SNP [dm3] 2R_17477515_SNP [dm6]	T	A	3.468e^-4	0.842	UPSTREAM veil DOWNSTREAM CG43110 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	15125335	2L_15125335_SNP [dm3] 2L_15125335_SNP [dm6]	G	T	3.475e^-4	0.842	INTERGENIC
3L	6567109	3L_6567109_SNP [dm3] 3L_6574009_SNP [dm6]	A	C	3.485e^-4	0.842	INTRON CG18769 & 1 other
2L	11508765	2L_11508765_SNP [dm3] 2L_11508765_SNP [dm6]	A	C	3.486e^-4	0.842	UTR_3_PRIME CG6509 DOWNSTREAM CG6509 & 1 other
X	14682432	X_14682432_SNP [dm3] X_14788399_SNP [dm6]	G	A	3.489e^-4	0.842	UTR_3_PRIME rut DOWNSTREAM CR45522
X	17576523	X_17576523_SNP [dm3] X_17682490_SNP [dm6]	C	T	3.496e^-4	0.842	UTR_5_PRIME chas INTRON chas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25865984	3R_25865984_SNP [dm3] 3R_30040262_SNP [dm6]	G	A	3.513e^-4	0.842	NON_SYNONYMOUS_CODING Sry-beta UPSTREAM janA & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	10283734	3L_10283734_SNP [dm3] 3L_10290634_SNP [dm6]	G	A	3.521e^-4	0.842	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	11209676	3L_11209676_SNP [dm3] 3L_11216576_SNP [dm6]	A	C	3.523e^-4	0.842	INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	3969242	2L_3969242_SNP [dm3] 2L_3969242_SNP [dm6]	T	C	3.531e^-4	0.842	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	3704326	2L_3704326_DEL [dm3] 2L_3704326_DEL [dm6]	ACCATCGAA	A	3.535e^-4	0.842	UTR_3_PRIME CG31778 DOWNSTREAM CG2816
X	15446455	X_15446455_SNP [dm3] X_15552422_SNP [dm6]	A	T	3.538e^-4	0.842	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	15023822	X_15023822_SNP [dm3] X_15129789_SNP [dm6]	A	C	3.543e^-4	0.842	INTRON drd
2R	834368	2R_834368_SNP [dm3] 2R_4946863_SNP [dm6]	C	G	3.547e^-4	0.842	INTRON Ir41a	transposable element FlyBase
2L	14360945	2L_14360945_SNP [dm3] 2L_14360945_SNP [dm6]	A	G	3.552e^-4	0.842	SYNONYMOUS_CODING Pgant35A EXON CR43463	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	13127922	X_13127922_SNP [dm3] X_13233889_SNP [dm6]	T	A	3.556e^-4	0.842	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	1555860	3L_1555860_SNP [dm3] 3L_1555860_SNP [dm6]	A	G	3.565e^-4	0.842	SYNONYMOUS_CODING CG12099 DOWNSTREAM Cct2	TF binding site mE1_TFBS_cad
2L	10711852	2L_10711852_SNP [dm3] 2L_10711852_SNP [dm6]	T	A	3.567e^-4	0.842	INTERGENIC
2L	13716045	2L_13716045_SNP [dm3] 2L_13716045_SNP [dm6]	C	T	3.568e^-4	0.842	INTRON CG31814
3R	5301830	3R_5301830_SNP [dm3] 3R_9476108_SNP [dm6]	G	A	3.573e^-4	0.842	INTRON CG16779	TF binding site mE1_TFBS_cad
X	15446772	X_15446772_SNP [dm3] X_15552739_SNP [dm6]	C	T	3.606e^-4	0.842	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9447741	2L_9447741_SNP [dm3] 2L_9447741_SNP [dm6]	G	A	3.622e^-4	0.842	INTRON numb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2R	5447285	2R_5447285_SNP [dm3] 2R_9559780_SNP [dm6]	C	T	3.623e^-4	0.842	SYNONYMOUS_CODING Or45b EXON CR45281	TF binding site mE1_TFBS_HSA
2L	2266061	2L_2266061_SNP [dm3] 2L_2266061_SNP [dm6]	G	A	3.625e^-4	0.842	UPSTREAM CG34049 INTERGENIC
3L	13739678	3L_13739678_SNP [dm3] 3L_13746578_SNP [dm6]	C	T	3.626e^-4	0.842	INTRON bru-3
X	17907256	X_17907256_SNP [dm3] X_18013223_SNP [dm6]	T	A	3.629e^-4	0.842	INTRON Sh
3L	8332801	3L_8332801_SNP [dm3] 3L_8339701_SNP [dm6]	A	C	3.660e^-4	0.842	SYNONYMOUS_CODING Pex2 UPSTREAM DNApol-alpha50	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_ttk
2R	11809299	2R_11809299_INS [dm3] 2R_15921794_INS [dm6]	G	GCGATTTG	3.661e^-4	0.842	UTR_5_PRIME sli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	14901346	X_14901346_DEL [dm3] X_15007313_DEL [dm6]	GG	G	3.671e^-4	0.842	UTR_3_PRIME eag	TF binding site BDTNP1_TFBS_dl
3R	6503025	3R_6503025_DEL [dm3] 3R_10677303_DEL [dm6]	TGGCGGACAC	T	3.676e^-4	0.842	UPSTREAM CG6465 DOWNSTREAM CG14688 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	13428931	2L_13428931_INS [dm3] 2L_13428931_INS [dm6]	G	GAGGGGCG	3.682e^-4	0.842	INTRON CG42784
2L	8425260	2L_8425260_SNP [dm3] 2L_8425260_SNP [dm6]	A	C	3.683e^-4	0.842	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8486175	2R_8486175_SNP [dm3] 2R_12598670_SNP [dm6]	A	T	3.686e^-4	0.842	INTRON Amph
2L	10659258	2L_10659258_SNP [dm3] 2L_10659258_SNP [dm6]	T	G	3.691e^-4	0.842	DOWNSTREAM CG45690 INTERGENIC
3R	5306374	3R_5306374_SNP [dm3] 3R_9480652_SNP [dm6]	T	C	3.695e^-4	0.842	INTRON CG16779	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7650371	2L_7650371_SNP [dm3] 2L_7650371_SNP [dm6]	A	G	3.695e^-4	0.842	INTRON Slob
2R	8485103	2R_8485103_SNP [dm3] 2R_12597598_SNP [dm6]	A	C	3.708e^-4	0.842	INTRON Amph
3L	16734843	3L_16734843_SNP [dm3] 3L_16741743_SNP [dm6]	A	T	3.715e^-4	0.842	INTERGENIC
3L	10253399	3L_10253399_SNP [dm3] 3L_10260299_SNP [dm6]	A	G	3.718e^-4	0.842	INTERGENIC
2L	18916854	2L_18916854_SNP [dm3] 2L_18916854_SNP [dm6]	A	G	3.719e^-4	0.842	UTR_3_PRIME ssp3	TF binding site mE1_TFBS_kn
2R	12753640	2R_12753640_INS [dm3] 2R_16866135_INS [dm6]	A	AA	3.721e^-4	0.842	INTRON Psi	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	12249519	X_12249519_SNP [dm3] X_12355486_SNP [dm6]	A	G	3.728e^-4	0.842	INTERGENIC
X	14710606	X_14710606_SNP [dm3] X_14816573_SNP [dm6]	A	G	3.729e^-4	0.842	INTRON rut
2L	2291253	2L_2291253_SNP [dm3] 2L_2291253_SNP [dm6]	A	C	3.729e^-4	0.842	UPSTREAM robl22E INTERGENIC
2R	6074628	2R_6074628_SNP [dm3] 2R_10187123_SNP [dm6]	T	A	3.730e^-4	0.842	INTRON KCNQ
X	16735758	X_16735758_SNP [dm3] X_16841725_SNP [dm6]	T	A	3.736e^-4	0.842	INTRON RSG7	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15967108	2L_15967108_SNP [dm3] 2L_15967108_SNP [dm6]	A	G	3.737e^-4	0.842	INTERGENIC
X	12820264	X_12820264_SNP [dm3] X_12926231_SNP [dm6]	G	T	3.741e^-4	0.842	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	3969214	2L_3969214_SNP [dm3] 2L_3969214_SNP [dm6]	G	T	3.746e^-4	0.842	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	2185631	3L_2185631_SNP [dm3] 3L_2185631_SNP [dm6]	T	C	3.752e^-4	0.842	UPSTREAM CG13810 INTERGENIC
X	5831144	X_5831144_SNP [dm3] X_5937111_SNP [dm6]	C	G	3.754e^-4	0.842	INTRON CG3726
2R	15909802	2R_15909802_SNP [dm3] 2R_20022297_SNP [dm6]	A	G	3.756e^-4	0.842	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	5757348	3L_5757348_SNP [dm3] 3L_5764248_SNP [dm6]	G	A	3.756e^-4	0.842	UPSTREAM snoRNA:684 & 1 other DOWNSTREAM snoRNA:Psi28S-1837a & 1 other INTRON CG10576 EXON snoRNA:Psi28S-1837b	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15128418	2L_15128418_SNP [dm3] 2L_15128418_SNP [dm6]	A	C	3.756e^-4	0.842	UPSTREAM CR44706 INTERGENIC
X	6933740	X_6933740_SNP [dm3] X_7039707_SNP [dm6]	C	T	3.761e^-4	0.842	UPSTREAM CG14427 INTRON CG12541	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9161155	3L_9161155_SNP [dm3] 3L_9168055_SNP [dm6]	A	T	3.763e^-4	0.842	INTRON Rdl
3R	13766927	3R_13766927_DEL [dm3] 3R_17941205_DEL [dm6]	TAT	T	3.764e^-4	0.842	INTRON cpo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3002339	3L_3002339_INS [dm3] 3L_3002339_INS [dm6]	A	AA	3.766e^-4	0.842	INTRON FMRFaR
2R	12759432	2R_12759432_SNP [dm3] 2R_16871927_SNP [dm6]	A	G	3.769e^-4	0.842	UPSTREAM CG6421 DOWNSTREAM CG6426 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	20167028	2R_20167028_SNP [dm3] 2R_24279505_SNP [dm6]	C	T	3.770e^-4	0.842	INTRON nvy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	10990306	3L_10990306_SNP [dm3] 3L_10997206_SNP [dm6]	C	A	3.774e^-4	0.842	INTRON klu	TF binding site BDTNP1_TFBS_da
2R	8340145	2R_8340145_SNP [dm3] 2R_12452640_SNP [dm6]	T	C	3.781e^-4	0.842	UTR_3_PRIME Dyb UPSTREAM Lac	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
X	8566197	X_8566197_SNP [dm3] X_8672164_SNP [dm6]	G	A	3.784e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13046368	2L_13046368_SNP [dm3] 2L_13046368_SNP [dm6]	A	C	3.796e^-4	0.842	INTRON CG9932
X	14910357	X_14910357_SNP [dm3] X_15016324_SNP [dm6]	T	C	3.800e^-4	0.842	NON_SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
3R	9589313	3R_9589313_SNP [dm3] 3R_13763591_SNP [dm6]	A	G	3.801e^-4	0.842	UTR_3_PRIME CG34383	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13993911	2L_13993911_SNP [dm3] 2L_13993911_SNP [dm6]	C	T	3.804e^-4	0.842	INTRON rk
3R	23075532	3R_23075532_SNP [dm3] 3R_27249810_SNP [dm6]	T	A	3.805e^-4	0.842	INTRON CG5987	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	15446742	X_15446742_SNP [dm3] X_15552709_SNP [dm6]	A	G	3.806e^-4	0.842	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	19170916	X_19170916_DEL [dm3] X_19276883_DEL [dm6]	CC	C	3.807e^-4	0.842	UTR_5_PRIME CG32536 UPSTREAM CG32537 DOWNSTREAM CG8028
3L	1410853	3L_1410853_SNP [dm3] 3L_1410853_SNP [dm6]	A	T	3.808e^-4	0.842	UPSTREAM CG9168 INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	12167879	3L_12167879_SNP [dm3] 3L_12174779_SNP [dm6]	G	T	3.811e^-4	0.842	INTRON Rh7
3R	15144695	3R_15144695_SNP [dm3] 3R_19318973_SNP [dm6]	T	A	3.817e^-4	0.842	INTRON Dl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14918810	X_14918810_SNP [dm3] X_15024777_SNP [dm6]	C	G	3.819e^-4	0.842	SYNONYMOUS_CODING be INTRON hiw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	15889772	3L_15889772_SNP [dm3] 3L_15896672_SNP [dm6]	G	A	3.820e^-4	0.842	INTRON pHCl
2R	1589799	2R_1589799_SNP [dm3] 2R_5702294_SNP [dm6]	G	A	3.826e^-4	0.842	SPLICE_SITE_DONOR vlc START_GAINED vlc UTR_5_PRIME vlc UPSTREAM vlc INTRON vlc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	18443695	2L_18443695_SNP [dm3] 2L_18443695_SNP [dm6]	G	A	3.830e^-4	0.842	UPSTREAM RpS26 DOWNSTREAM ncm INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17189631	2R_17189631_SNP [dm3] 2R_21302126_SNP [dm6]	C	A	3.832e^-4	0.842	UTR_5_PRIME CG42672 INTRON CG42672
2R	12047523	2R_12047523_SNP [dm3] 2R_16160018_SNP [dm6]	A	G	3.833e^-4	0.842	INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8423893	2L_8423893_SNP [dm3] 2L_8423893_SNP [dm6]	G	C	3.836e^-4	0.842	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3R	18765424	3R_18765424_SNP [dm3] 3R_22939702_SNP [dm6]	A	T	3.845e^-4	0.842	INTRON klg
2L	4250904	2L_4250904_SNP [dm3] 2L_4250904_SNP [dm6]	A	T	3.855e^-4	0.842	INTERGENIC	TF binding site mE1_TFBS_inv
2R	14575252	2R_14575252_SNP [dm3] 2R_18687747_SNP [dm6]	T	G	3.869e^-4	0.842	UPSTREAM CG44433 & 1 other INTRON CG42855	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11884475	3L_11884475_SNP [dm3] 3L_11891375_SNP [dm6]	T	A	3.870e^-4	0.842	INTRON CG44837
2L	10659010	2L_10659010_SNP [dm3] 2L_10659010_SNP [dm6]	A	G	3.870e^-4	0.842	DOWNSTREAM CR45692 & 1 other INTERGENIC
X	15023807	X_15023807_SNP [dm3] X_15129774_SNP [dm6]	A	G	3.874e^-4	0.842	INTRON drd
2R	18151006	2R_18151006_SNP [dm3] 2R_22263501_SNP [dm6]	G	C	3.876e^-4	0.842	INTRON dve
3R	23075531	3R_23075531_SNP [dm3] 3R_27249809_SNP [dm6]	G	A	3.876e^-4	0.842	INTRON CG5987	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7508746	2R_7508746_SNP [dm3] 2R_11621241_SNP [dm6]	A	G	3.878e^-4	0.842	SYNONYMOUS_CODING CG9005	TF binding site mE1_TFBS_chinmo
3L	1398573	3L_1398573_SNP [dm3] 3L_1398573_SNP [dm6]	C	T	3.887e^-4	0.842	UPSTREAM CG32320 DOWNSTREAM tRNA:E4:62Aa & 3 others INTRON Ptp61F
3L	12859930	3L_12859930_INS [dm3] 3L_12866830_INS [dm6]	T	CA	3.899e^-4	0.842	INTERGENIC
X	16793797	X_16793797_SNP [dm3] X_16899764_SNP [dm6]	G	A	3.899e^-4	0.842	INTERGENIC
3R	26161352	3R_26161352_SNP [dm3] 3R_30335630_SNP [dm6]	C	A	3.902e^-4	0.842	INTRON hdc
2L	3968723	2L_3968723_SNP [dm3] 2L_3968723_SNP [dm6]	T	A	3.909e^-4	0.842	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	15023812	X_15023812_SNP [dm3] X_15129779_SNP [dm6]	C	T	3.913e^-4	0.842	INTRON drd
3L	8676305	3L_8676305_SNP [dm3] 3L_8683205_SNP [dm6]	C	T	3.923e^-4	0.842	INTERGENIC	regulatory region REDfly_CRMs
3L	3866738	3L_3866738_SNP [dm3] 3L_3866738_SNP [dm6]	T	A	3.923e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14370487	2L_14370487_INS [dm3] 2L_14370487_INS [dm6]	T	TATGTGT	3.924e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	12132474	2L_12132474_SNP [dm3] 2L_12132474_SNP [dm6]	G	A	3.929e^-4	0.842	INTRON rho-6
3L	15352550	3L_15352550_SNP [dm3] 3L_15359450_SNP [dm6]	G	T	3.932e^-4	0.842	INTERGENIC
2R	14532301	2R_14532301_SNP [dm3] 2R_18644796_SNP [dm6]	C	A	3.932e^-4	0.842	INTRON SP2637	TF binding site BDTNP1_TFBS_da
2L	7943692	2L_7943692_INS [dm3] 2L_7943692_INS [dm6]	T	TTGAACTTTGAATT...	3.932e^-4	0.842	INTRON Snoo
3R	21448068	3R_21448068_SNP [dm3] 3R_25622346_SNP [dm6]	T	C	3.936e^-4	0.842	INTRON Npl4	TF binding site mE1_TFBS_sens
2L	418866	2L_418866_SNP [dm3] 2L_418866_SNP [dm6]	C	T	3.956e^-4	0.842	SYNONYMOUS_CODING CG13690 DOWNSTREAM ebi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
X	4778971	X_4778971_SNP [dm3] X_4884938_SNP [dm6]	A	T	3.963e^-4	0.842	INTRON CG42594
3R	23188330	3R_23188330_SNP [dm3] 3R_27362608_SNP [dm6]	A	T	3.974e^-4	0.842	SYNONYMOUS_CODING CG42534	TF binding site mE1_TFBS_cad
X	2338411	X_2338411_SNP [dm3] X_2444378_SNP [dm6]	C	A	3.974e^-4	0.842	UTR_3_PRIME boi UPSTREAM tko	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
2R	12333456	2R_12333456_SNP [dm3] 2R_16445951_SNP [dm6]	C	T	3.977e^-4	0.842	UPSTREAM CG15925 INTERGENIC
3R	3744595	3R_3744595_SNP [dm3] 3R_7918873_SNP [dm6]	A	G	3.988e^-4	0.842	SYNONYMOUS_CODING CG10445
2R	17240261	2R_17240261_SNP [dm3] 2R_21352756_SNP [dm6]	T	C	3.994e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2L	3969271	2L_3969271_SNP [dm3] 2L_3969271_SNP [dm6]	G	T	4.000e^-4	0.842	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	15099881	3R_15099881_SNP [dm3] 3R_19274159_SNP [dm6]	G	A	4.004e^-4	0.842	INTERGENIC
2R	18207479	2R_18207479_SNP [dm3] 2R_22319974_SNP [dm6]	A	G	4.006e^-4	0.842	INTRON Gp150 EXON CR44756	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	6460700	2R_6460700_SNP [dm3] 2R_10573195_SNP [dm6]	A	G	4.007e^-4	0.842	INTRON psq
2L	15630813	2L_15630813_SNP [dm3] 2L_15630813_SNP [dm6]	C	T	4.011e^-4	0.842	SYNONYMOUS_CODING CG18480
2L	12112000	2L_12112000_SNP [dm3] 2L_12112000_SNP [dm6]	T	G	4.011e^-4	0.842	UTR_3_PRIME Phae2 DOWNSTREAM Phae2	TF binding site mE1_TFBS_cad
2L	2460981	2L_2460981_DEL [dm3] 2L_2460981_DEL [dm6]	AA	A	4.017e^-4	0.842	UPSTREAM tRNA:Y1:22Fb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	5482194	2L_5482194_SNP [dm3] 2L_5482194_SNP [dm6]	A	T	4.017e^-4	0.842	INTERGENIC
3L	14898932	3L_14898932_SNP [dm3] 3L_14905832_SNP [dm6]	A	C	4.017e^-4	0.842	INTRON DCX-EMAP
2R	10884133	2R_10884133_DEL [dm3] 2R_14996628_DEL [dm6]	AA	A	4.019e^-4	0.842	INTERGENIC	TF binding site mE1_TFBS_inv
X	14906590	X_14906590_SNP [dm3] X_15012557_SNP [dm6]	A	G	4.024e^-4	0.842	INTRON hiw	TF binding site mE1_TFBS_chinmo
2R	18216969	2R_18216969_SNP [dm3] 2R_22329464_SNP [dm6]	T	A	4.026e^-4	0.842	NON_SYNONYMOUS_CODING CG34207 UPSTREAM pgc DOWNSTREAM T3dh & 1 other
X	3159566	X_3159566_SNP [dm3] X_3265533_SNP [dm6]	C	A	4.043e^-4	0.842	INTRON dnc
X	14419812	X_14419812_SNP [dm3] X_14525779_SNP [dm6]	T	C	4.046e^-4	0.842	INTERGENIC
2R	3448818	2R_3448818_SNP [dm3] 2R_7561313_SNP [dm6]	G	A	4.047e^-4	0.842	UTR_3_PRIME Corin	TF binding site mE1_TFBS_cad
2L	19270476	2L_19270476_SNP [dm3] 2L_19270476_SNP [dm6]	C	A	4.048e^-4	0.842	INTRON CR44190
2R	16739849	2R_16739849_SNP [dm3] 2R_20852344_SNP [dm6]	A	T	4.049e^-4	0.842	UPSTREAM CG9993 INTERGENIC	TF binding site mE1_TFBS_cad
X	15025107	X_15025107_SNP [dm3] X_15131074_SNP [dm6]	G	A	4.049e^-4	0.842	INTRON drd
2R	18511384	2R_18511384_SNP [dm3] 2R_22623879_SNP [dm6]	G	A	4.051e^-4	0.842	INTRON CG33143
2L	4891424	2L_4891424_SNP [dm3] 2L_4891424_SNP [dm6]	G	C	4.055e^-4	0.842	UPSTREAM CG3036 DOWNSTREAM CG15625 EXON CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	17488704	3L_17488704_SNP [dm3] 3L_17495604_SNP [dm6]	A	G	4.065e^-4	0.842	DOWNSTREAM edin INTRON Oatp74D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2R	7530816	2R_7530816_SNP [dm3] 2R_11643311_SNP [dm6]	A	G	4.068e^-4	0.842	INTRON CG9003
3L	841017	3L_841017_DEL [dm3] 3L_841017_DEL [dm6]	GGC	G	4.069e^-4	0.842	UPSTREAM Gr61a INTRON CG13902	TF binding site mE1_TFBS_sens
2L	9086487	2L_9086487_SNP [dm3] 2L_9086487_SNP [dm6]	A	G	4.077e^-4	0.842	NON_SYNONYMOUS_CODING Toll-4
2L	9086505	2L_9086505_SNP [dm3] 2L_9086505_SNP [dm6]	A	T	4.077e^-4	0.842	NON_SYNONYMOUS_CODING Toll-4
X	16048552	X_16048552_DEL [dm3] X_16154519_DEL [dm6]	AG	A	4.085e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2R	9506377	2R_9506377_SNP [dm3] 2R_13618872_SNP [dm6]	G	A	4.088e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18451362	2L_18451362_SNP [dm3] 2L_18451362_SNP [dm6]	C	T	4.104e^-4	0.842	SYNONYMOUS_CODING bsf	TF binding site mE1_TFBS_cad
2L	7697369	2L_7697369_SNP [dm3] 2L_7697369_SNP [dm6]	G	A	4.104e^-4	0.842	INTRON Tep2
3L	3886459	3L_3886459_SNP [dm3] 3L_3886459_SNP [dm6]	T	C	4.107e^-4	0.842	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	3417102	X_3417102_INS [dm3] X_3523069_INS [dm6]	T	TACGTAT	4.109e^-4	0.842	DOWNSTREAM CR44999 INTRON CG32791
2L	7631699	2L_7631699_SNP [dm3] 2L_7631699_SNP [dm6]	T	C	4.109e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_hb
X	15771876	X_15771876_SNP [dm3] X_15877843_SNP [dm6]	A	G	4.113e^-4	0.842	SYNONYMOUS_CODING tay	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12966507	2L_12966507_SNP [dm3] 2L_12966507_SNP [dm6]	G	C	4.116e^-4	0.842	UPSTREAM CG16800 INTERGENIC
X	14681316	X_14681316_SNP [dm3] X_14787283_SNP [dm6]	T	A	4.121e^-4	0.842	UPSTREAM Ag5r DOWNSTREAM rut EXON CR45522
2L	8423804	2L_8423804_SNP [dm3] 2L_8423804_SNP [dm6]	A	G	4.131e^-4	0.842	INTRON Akap200	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4250832	2L_4250832_DEL [dm3] 2L_4250832_DEL [dm6]	AG	A	4.137e^-4	0.842	INTERGENIC	TF binding site mE1_TFBS_inv
X	15087801	X_15087801_INS [dm3] X_15193768_INS [dm6]	A	AGTATG	4.147e^-4	0.842	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	15087805	X_15087805_INS [dm3] X_15193772_INS [dm6]	A	AGAGTAT	4.147e^-4	0.842	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12132477	2L_12132477_SNP [dm3] 2L_12132477_SNP [dm6]	T	C	4.148e^-4	0.842	INTRON rho-6
3L	6154843	3L_6154843_SNP [dm3] 3L_6161743_SNP [dm6]	A	C	4.149e^-4	0.842	DOWNSTREAM Cpr65Az & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7658247	2R_7658247_SNP [dm3] 2R_11770742_SNP [dm6]	A	G	4.183e^-4	0.842	INTRON ths
3L	3460710	3L_3460710_SNP [dm3] 3L_3460710_SNP [dm6]	T	A	4.185e^-4	0.842	UTR_5_PRIME eIF5B UPSTREAM armi & 1 other	TF binding site BDTNP1_TFBS_dl
X	17575761	X_17575761_SNP [dm3] X_17681728_SNP [dm6]	C	T	4.185e^-4	0.842	UTR_5_PRIME chas INTRON chas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12109296	2L_12109296_SNP [dm3] 2L_12109296_SNP [dm6]	G	T	4.189e^-4	0.842	UPSTREAM Phae1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	9009967	2L_9009967_SNP [dm3] 2L_9009967_SNP [dm6]	A	G	4.190e^-4	0.842	UPSTREAM CG9568 INTERGENIC
X	14921166	X_14921166_INS [dm3] X_15027133_INS [dm6]	C	CAGCTTCTTGAGCTTGCTGC...	4.194e^-4	0.842	INTRON hiw & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19144831	2L_19144831_SNP [dm3] 2L_19144831_SNP [dm6]	T	A	4.195e^-4	0.842	INTRON brat
2L	6520781	2L_6520781_SNP [dm3] 2L_6520781_SNP [dm6]	A	G	4.200e^-4	0.842	INTRON CG31637
2R	5400715	2R_5400715_SNP [dm3] 2R_9513210_SNP [dm6]	T	G	4.207e^-4	0.842	INTRON brp
2R	16418066	2R_16418066_INS [dm3] 2R_20530561_INS [dm6]	G	GGT	4.208e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	18468449	3R_18468449_SNP [dm3] 3R_22642727_SNP [dm6]	T	A	4.214e^-4	0.842	INTRON CG45058
2R	16418064	2R_16418064_SNP [dm3] 2R_20530559_SNP [dm6]	T	G	4.214e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19156320	2R_19156320_SNP [dm3] 2R_23268797_SNP [dm6]	G	A	4.223e^-4	0.842	INTERGENIC
3L	8709319	3L_8709319_SNP [dm3] 3L_8716219_SNP [dm6]	C	T	4.224e^-4	0.842	INTERGENIC
2R	14704032	2R_14704032_DEL [dm3] 2R_18816527_DEL [dm6]	TT	T	4.241e^-4	0.842	UPSTREAM CG15096 DOWNSTREAM CR43418 INTERGENIC
2L	10514378	2L_10514378_SNP [dm3] 2L_10514378_SNP [dm6]	A	G	4.245e^-4	0.842	INTRON Fatp & 1 other
X	14474722	X_14474722_SNP [dm3] X_14580689_SNP [dm6]	C	A	4.246e^-4	0.842	UTR_5_PRIME CG14414 INTRON CG14414	TF binding site BDTNP1_TFBS_dl
2L	7651328	2L_7651328_SNP [dm3] 2L_7651328_SNP [dm6]	G	A	4.246e^-4	0.842	SYNONYMOUS_CODING Slob
2R	11934705	2R_11934705_SNP [dm3] 2R_16047200_SNP [dm6]	C	T	4.251e^-4	0.842	UTR_3_PRIME SP2353 UPSTREAM CG8405 DOWNSTREAM SP2353	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	19055564	X_19055564_SNP [dm3] X_19161531_SNP [dm6]	T	C	4.251e^-4	0.842	INTRON RhoGAP18B	TF binding site mE1_TFBS_inv
X	8763102	X_8763102_SNP [dm3] X_8869069_SNP [dm6]	A	G	4.255e^-4	0.842	INTRON CG12075	TF binding site mE1_TFBS_chinmo
2R	1082616	2R_1082616_SNP [dm3] 2R_5195111_SNP [dm6]	A	G	4.265e^-4	0.842	SYNONYMOUS_CODING Nipped-A
2R	16625264	2R_16625264_SNP [dm3] 2R_20737759_SNP [dm6]	G	C	4.268e^-4	0.842	INTRON dpr
3L	10283141	3L_10283141_SNP [dm3] 3L_10290041_SNP [dm6]	T	A	4.289e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3537149	2L_3537149_SNP [dm3] 2L_3537149_SNP [dm6]	C	T	4.291e^-4	0.842	UPSTREAM CR44308 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17576482	X_17576482_SNP [dm3] X_17682449_SNP [dm6]	C	G	4.298e^-4	0.842	UTR_5_PRIME chas INTRON chas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7651063	2L_7651063_SNP [dm3] 2L_7651063_SNP [dm6]	A	G	4.302e^-4	0.842	SYNONYMOUS_CODING Slob
2L	7943639	2L_7943639_SNP [dm3] 2L_7943639_SNP [dm6]	T	G	4.304e^-4	0.842	INTRON Snoo
3R	2861434	3R_2861434_SNP [dm3] 3R_7035712_SNP [dm6]	A	G	4.307e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	10895266	2L_10895266_DEL [dm3] 2L_10895266_DEL [dm6]	CAGATACTCTAC...	C	4.311e^-4	0.842	EXON CR44491
2L	3544158	2L_3544158_SNP [dm3] 2L_3544158_SNP [dm6]	C	G	4.317e^-4	0.842	INTRON drm	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3891015	3L_3891015_DEL [dm3] 3L_3891015_DEL [dm6]	ACATTTTAAGTTAATTGAAA...	A	4.323e^-4	0.842	DOWNSTREAM CR45422 INTERGENIC
2L	7867793	2L_7867793_DEL [dm3] 2L_7867793_DEL [dm6]	CTGCAAATAC	C	4.324e^-4	0.842	INTRON Proc
X	18241704	X_18241704_SNP [dm3] X_18347671_SNP [dm6]	G	T	4.331e^-4	0.842	INTRON CG6123
2R	11765451	2R_11765451_SNP [dm3] 2R_15877946_SNP [dm6]	T	C	4.340e^-4	0.842	INTRON sli
2L	10895326	2L_10895326_SNP [dm3] 2L_10895326_SNP [dm6]	A	C	4.343e^-4	0.842	EXON CR44491
2L	4137956	2L_4137956_SNP [dm3] 2L_4137956_SNP [dm6]	A	G	4.344e^-4	0.842	INTERGENIC
2R	410152	2R_410152_SNP [dm3] 2R_4522647_SNP [dm6]	G	T	4.356e^-4	0.842	INTERGENIC	transposable element FlyBase
3R	9531350	3R_9531350_SNP [dm3] 3R_13705628_SNP [dm6]	T	C	4.356e^-4	0.842	UPSTREAM Adgf-D INTERGENIC
3R	27165233	3R_27165233_SNP [dm3] 3R_31339511_SNP [dm6]	G	A	4.360e^-4	0.842	INTRON CG34347
3L	6770458	3L_6770458_SNP [dm3] 3L_6777358_SNP [dm6]	A	T	4.367e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9260621	2R_9260621_SNP [dm3] 2R_13373116_SNP [dm6]	A	C	4.370e^-4	0.842	INTERGENIC
3R	17790853	3R_17790853_SNP [dm3] 3R_21965131_SNP [dm6]	C	A	4.377e^-4	0.842	INTRON Eip93F
2L	3968795	2L_3968795_SNP [dm3] 2L_3968795_SNP [dm6]	C	T	4.380e^-4	0.842	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	15370240	3R_15370240_SNP [dm3] 3R_19544518_SNP [dm6]	C	T	4.380e^-4	0.842	INTRON Dys
X	12463616	X_12463616_SNP [dm3] X_12569583_SNP [dm6]	A	T	4.386e^-4	0.842	UTR_3_PRIME CG11138 DOWNSTREAM CG11138
X	17512065	X_17512065_SNP [dm3] X_17618032_SNP [dm6]	C	A	4.387e^-4	0.842	INTERGENIC
2R	13806426	2R_13806426_SNP [dm3] 2R_17918921_SNP [dm6]	G	T	4.389e^-4	0.842	INTRON Elk
2R	7917464	2R_7917464_SNP [dm3] 2R_12029959_SNP [dm6]	C	T	4.402e^-4	0.842	SYNONYMOUS_CODING pds5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16725656	2R_16725656_DEL [dm3] 2R_20838151_DEL [dm6]	TAAAA	T	4.402e^-4	0.842	INTRON CR44667	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2L	18463249	2L_18463249_SNP [dm3] 2L_18463249_SNP [dm6]	T	A	4.410e^-4	0.842	INTRON let-7-C
X	12679580	X_12679580_SNP [dm3] X_12785547_SNP [dm6]	G	A	4.417e^-4	0.842	UPSTREAM CG32647 DOWNSTREAM Pde9 INTERGENIC	TF binding site mE1_TFBS_kn
3R	15132736	3R_15132736_SNP [dm3] 3R_19307014_SNP [dm6]	C	T	4.417e^-4	0.842	INTRON Dl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17967249	2R_17967249_DEL [dm3] 2R_22079744_DEL [dm6]	AAACGTT	A	4.417e^-4	0.842	UPSTREAM Synj DOWNSTREAM GlcT-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3704339	2L_3704339_SNP [dm3] 2L_3704339_SNP [dm6]	G	A	4.417e^-4	0.842	UTR_3_PRIME CG31778 DOWNSTREAM CG2816
3L	10283001	3L_10283001_INS [dm3] 3L_10289901_INS [dm6]	A	ATCTA	4.421e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	888907	3L_888907_SNP [dm3] 3L_888907_SNP [dm6]	G	T	4.423e^-4	0.842	SYNONYMOUS_CODING CG32479	TF binding site mE1_TFBS_chinmo
2L	7103660	2L_7103660_SNP [dm3] 2L_7103660_SNP [dm6]	C	T	4.424e^-4	0.842	INTRON Pvf3
2L	4236092	2L_4236092_SNP [dm3] 2L_4236092_SNP [dm6]	T	C	4.429e^-4	0.842	INTERGENIC
3L	11404814	3L_11404814_SNP [dm3] 3L_11411714_SNP [dm6]	C	A	4.433e^-4	0.842	INTERGENIC
2R	7789245	2R_7789245_DEL [dm3] 2R_11901740_DEL [dm6]	GG	G	4.442e^-4	0.842	DOWNSTREAM Zip48C INTRON MCPH1	TF binding site mE1_TFBS_sens
2L	4144579	2L_4144579_SNP [dm3] 2L_4144579_SNP [dm6]	T	A	4.445e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	1375589	2R_1375589_SNP [dm3] 2R_5488084_SNP [dm6]	C	T	4.452e^-4	0.842	INTRON CG30440	transposable element FlyBase
3L	15055734	3L_15055734_SNP [dm3] 3L_15062634_SNP [dm6]	T	C	4.464e^-4	0.842	UPSTREAM CG13460 & 1 other INTRON Sytbeta
3R	1223439	3R_1223439_SNP [dm3] 3R_5397717_SNP [dm6]	A	T	4.468e^-4	0.842	UTR_3_PRIME CG1172 DOWNSTREAM CG1172 INTRON Or83a
3L	17529863	3L_17529863_SNP [dm3] 3L_17536763_SNP [dm6]	A	G	4.474e^-4	0.842	INTRON Nedd4
2R	7323439	2R_7323439_SNP [dm3] 2R_11435934_SNP [dm6]	T	C	4.475e^-4	0.842	UPSTREAM CG7777 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
X	6933747	X_6933747_DEL [dm3] X_7039714_DEL [dm6]	ATCACGCAC	A	4.479e^-4	0.842	UPSTREAM CG14427 INTRON CG12541	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19306794	2L_19306794_SNP [dm3] 2L_19306794_SNP [dm6]	C	G	4.482e^-4	0.842	INTERGENIC
2R	2734968	2R_2734968_SNP [dm3] 2R_6847463_SNP [dm6]	A	T	4.486e^-4	0.842	INTERGENIC
2R	2953089	2R_2953089_DEL [dm3] 2R_7065584_DEL [dm6]	CACTTGCATAC...	C	4.495e^-4	0.842	INTRON Tsp42Er
3R	9334821	3R_9334821_SNP [dm3] 3R_13509099_SNP [dm6]	G	C	4.499e^-4	0.842	INTERGENIC
3R	25273070	3R_25273070_SNP [dm3] 3R_29447348_SNP [dm6]	G	C	4.500e^-4	0.842	INTRON Ptp99A
2L	12547358	2L_12547358_SNP [dm3] 2L_12547358_SNP [dm6]	C	A	4.501e^-4	0.842	UPSTREAM bun INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4499468	2L_4499468_SNP [dm3] 2L_4499468_SNP [dm6]	C	T	4.504e^-4	0.842	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13364229	2R_13364229_SNP [dm3] 2R_17476724_SNP [dm6]	T	A	4.509e^-4	0.842	UPSTREAM CG6520 DOWNSTREAM CG43110 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	2615605	X_2615605_SNP [dm3] X_2721572_SNP [dm6]	T	A	4.515e^-4	0.842	NON_SYNONYMOUS_CODING fs_1_Yb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	1204001	2L_1204001_SNP [dm3] 2L_1204001_SNP [dm6]	C	A	4.526e^-4	0.842	UPSTREAM CG14342 INTERGENIC
3L	15352558	3L_15352558_SNP [dm3] 3L_15359458_SNP [dm6]	T	C	4.545e^-4	0.842	INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.412e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.08807

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	6.4895	0.039

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2036 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	13988913	2L_13988913_SNP [dm3] 2L_13988913_SNP [dm6]	T	C	1.956e^-6	0.603	INTRON rk
2R	14572112	2R_14572112_SNP [dm3] 2R_18684607_SNP [dm6]	T	C	2.327e^-6	0.603	NON_SYNONYMOUS_CODING CG44433 UPSTREAM CG44434 & 1 other
2L	8324477	2L_8324477_SNP [dm3] 2L_8324477_SNP [dm6]	C	A	2.340e^-6	0.603	INTRON CG7781
2L	10712519	2L_10712519_SNP [dm3] 2L_10712519_SNP [dm6]	G	C	2.429e^-6	0.603	INTERGENIC
2L	8809114	2L_8809114_SNP [dm3] 2L_8809114_SNP [dm6]	G	C	3.071e^-6	0.603	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	11427861	2L_11427861_SNP [dm3] 2L_11427861_SNP [dm6]	C	G	3.287e^-6	0.603	INTERGENIC
2R	16739791	2R_16739791_SNP [dm3] 2R_20852286_SNP [dm6]	C	T	3.433e^-6	0.603	UPSTREAM CG9993 INTERGENIC
2L	11361298	2L_11361298_SNP [dm3] 2L_11361298_SNP [dm6]	T	G	3.857e^-6	0.603	INTRON salr	regulatory region REDfly_CRMs
2R	4589494	2R_4589494_SNP [dm3] 2R_8701989_SNP [dm6]	C	T	4.368e^-6	0.603	SYNONYMOUS_CODING CG12376 UPSTREAM CG12376 & 1 other
3L	15770547	3L_15770547_SNP [dm3] 3L_15777447_SNP [dm6]	G	T	4.559e^-6	0.603	INTERGENIC
2R	19400339	2R_19400339_SNP [dm3] 2R_23512816_SNP [dm6]	G	T	4.673e^-6	0.603	UPSTREAM CG3906 INTERGENIC
2L	7673681	2L_7673681_SNP [dm3] 2L_7673681_SNP [dm6]	C	A	5.388e^-6	0.603	INTRON Slob & 1 other	TF binding site mE1_TFBS_sens
2R	18201315	2R_18201315_SNP [dm3] 2R_22313810_SNP [dm6]	C	A	5.708e^-6	0.603	INTRON CR44758
2L	7673680	2L_7673680_SNP [dm3] 2L_7673680_SNP [dm6]	C	A	6.052e^-6	0.603	INTRON Slob & 1 other	TF binding site mE1_TFBS_sens
2L	8365885	2L_8365885_SNP [dm3] 2L_8365885_SNP [dm6]	G	A	6.157e^-6	0.603	UPSTREAM Pp2A-29B DOWNSTREAM CSN8 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
X	7759341	X_7759341_SNP [dm3] X_7865308_SNP [dm6]	A	G	6.659e^-6	0.603	SYNONYMOUS_CODING Ir7b
X	19887172	X_19887172_SNP [dm3] X_19993139_SNP [dm6]	A	T	7.532e^-6	0.603	INTERGENIC
2L	13344168	2L_13344168_SNP [dm3] 2L_13344168_SNP [dm6]	T	C	8.033e^-6	0.603	INTERGENIC
2L	8550085	2L_8550085_SNP [dm3] 2L_8550085_SNP [dm6]	T	C	8.216e^-6	0.603	INTRON Sema-1a
3R	21448068	3R_21448068_SNP [dm3] 3R_25622346_SNP [dm6]	T	C	9.290e^-6	0.603	INTRON Npl4	TF binding site mE1_TFBS_sens
3L	12316404	3L_12316404_SNP [dm3] 3L_12323304_SNP [dm6]	T	C	1.007e^-5	0.603	INTERGENIC
2L	12547485	2L_12547485_SNP [dm3] 2L_12547485_SNP [dm6]	T	A	1.025e^-5	0.603	UPSTREAM bun INTERGENIC	TF binding site mE1_TFBS_HSA
3L	7262060	3L_7262060_SNP [dm3] 3L_7268960_SNP [dm6]	G	A	1.065e^-5	0.603	UTR_3_PRIME unc-13-4A
3L	867362	3L_867362_SNP [dm3] 3L_867362_SNP [dm6]	A	G	1.082e^-5	0.603	INTRON CG12502
2R	3391066	2R_3391066_SNP [dm3] 2R_7503561_SNP [dm6]	A	T	1.133e^-5	0.603	INTRON didum	TF binding site mE1_TFBS_cad
2L	8005476	2L_8005476_SNP [dm3] 2L_8005476_SNP [dm6]	A	G	1.158e^-5	0.603	SYNONYMOUS_CODING Spn28Dc	TF binding site mE1_TFBS_cad
2L	11361353	2L_11361353_SNP [dm3] 2L_11361353_SNP [dm6]	G	A	1.205e^-5	0.603	INTRON salr	regulatory region REDfly_CRMs
X	15086054	X_15086054_SNP [dm3] X_15192021_SNP [dm6]	T	A	1.212e^-5	0.603	INTERGENIC
2L	8324431	2L_8324431_SNP [dm3] 2L_8324431_SNP [dm6]	T	A	1.221e^-5	0.603	INTRON CG7781
2L	8940027	2L_8940027_SNP [dm3] 2L_8940027_SNP [dm6]	G	A	1.255e^-5	0.603	SYNONYMOUS_CODING CG9510 DOWNSTREAM Tsp29Fb
3R	15635224	3R_15635224_SNP [dm3] 3R_19809502_SNP [dm6]	T	G	1.316e^-5	0.603	INTRON bnl
X	15084724	X_15084724_SNP [dm3] X_15190691_SNP [dm6]	C	A	1.334e^-5	0.603	DOWNSTREAM CG43737 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	15086636	X_15086636_SNP [dm3] X_15192603_SNP [dm6]	A	T	1.334e^-5	0.603	INTERGENIC
X	15086887	X_15086887_SNP [dm3] X_15192854_SNP [dm6]	C	T	1.334e^-5	0.603	INTERGENIC
X	14623873	X_14623873_SNP [dm3] X_14729840_SNP [dm6]	G	C	1.335e^-5	0.603	INTRON NetB
2L	3672346	2L_3672346_SNP [dm3] 2L_3672346_SNP [dm6]	A	C	1.358e^-5	0.603	INTRON CG34340
3L	10809405	3L_10809405_SNP [dm3] 3L_10816305_SNP [dm6]	T	G	1.388e^-5	0.603	UPSTREAM CR45247 DOWNSTREAM CG42831 INTERGENIC
2R	18201316	2R_18201316_SNP [dm3] 2R_22313811_SNP [dm6]	C	A	1.429e^-5	0.603	INTRON CR44758
2L	19301395	2L_19301395_SNP [dm3] 2L_19301395_SNP [dm6]	C	T	1.433e^-5	0.603	INTRON CG10750
2L	8940123	2L_8940123_SNP [dm3] 2L_8940123_SNP [dm6]	G	A	1.452e^-5	0.603	SYNONYMOUS_CODING CG9510 DOWNSTREAM Tsp29Fb
X	15086253	X_15086253_SNP [dm3] X_15192220_SNP [dm6]	T	C	1.523e^-5	0.603	INTERGENIC
2L	3672277	2L_3672277_SNP [dm3] 2L_3672277_SNP [dm6]	T	G	1.543e^-5	0.603	INTRON CG34340
2L	8254705	2L_8254705_SNP [dm3] 2L_8254705_SNP [dm6]	G	A	1.563e^-5	0.603	INTRON CG8086	TF binding site BDTNP1_TFBS_twi
X	14919584	X_14919584_SNP [dm3] X_15025551_SNP [dm6]	C	T	1.602e^-5	0.603	INTRON hiw & 1 other
2R	851779	2R_851779_INS [dm3] 2R_4964274_INS [dm6]	T	TTTTCTGCCTCTAACAATT...	1.609e^-5	0.603	INTRON Ir41a	transposable element FlyBase
X	2615293	X_2615293_SNP [dm3] X_2721260_SNP [dm6]	C	G	1.669e^-5	0.603	NON_SYNONYMOUS_CODING fs_1_Yb UPSTREAM CG2701	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	16363232	2L_16363232_INS [dm3] 2L_16363232_INS [dm6]	A	AA	1.680e^-5	0.603	INTERGENIC
3R	18405727	3R_18405727_SNP [dm3] 3R_22580005_SNP [dm6]	A	T	1.683e^-5	0.603	UTR_3_PRIME CG33110 UPSTREAM CSN6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	7797077	2L_7797077_SNP [dm3] 2L_7797077_SNP [dm6]	A	T	1.697e^-5	0.603	SYNONYMOUS_CODING Herp DOWNSTREAM CR44825	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11508819	2L_11508819_SNP [dm3] 2L_11508819_SNP [dm6]	T	C	1.820e^-5	0.603	UTR_3_PRIME CG6509 DOWNSTREAM spz4
2L	10708136	2L_10708136_SNP [dm3] 2L_10708136_SNP [dm6]	T	A	1.899e^-5	0.603	INTRON Lip2
X	15086191	X_15086191_SNP [dm3] X_15192158_SNP [dm6]	T	G	1.912e^-5	0.603	INTERGENIC
2L	8366015	2L_8366015_SNP [dm3] 2L_8366015_SNP [dm6]	C	T	1.947e^-5	0.603	UPSTREAM Pp2A-29B DOWNSTREAM CSN8 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	8667784	2L_8667784_SNP [dm3] 2L_8667784_SNP [dm6]	A	G	1.988e^-5	0.603	UTR_3_PRIME Sema-1a DOWNSTREAM Sema-1a
2L	13428832	2L_13428832_SNP [dm3] 2L_13428832_SNP [dm6]	G	T	1.990e^-5	0.603	INTRON CG42784
2R	20021813	2R_20021813_SNP [dm3] 2R_24134290_SNP [dm6]	C	A	2.004e^-5	0.603	UPSTREAM tamo DOWNSTREAM CG4065 INTRON Zfrp8	TF binding site BDTNP1_TFBS_dl
2L	8367337	2L_8367337_SNP [dm3] 2L_8367337_SNP [dm6]	C	T	2.124e^-5	0.603	SYNONYMOUS_CODING Pp2A-29B	TF binding site mE1_TFBS_cad
3R	24540380	3R_24540380_SNP [dm3] 3R_28714658_SNP [dm6]	T	C	2.169e^-5	0.603	INTRON htt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	27455511	3R_27455511_SNP [dm3] 3R_31629789_SNP [dm6]	T	C	2.182e^-5	0.603	INTRON kek6
X	15509930	X_15509930_DEL [dm3] X_15615897_DEL [dm6]	TTAATTGGCTGCGTGCGAGC...	C	2.189e^-5	0.603	INTRON sog
X	14919600	X_14919600_SNP [dm3] X_15025567_SNP [dm6]	T	G	2.194e^-5	0.603	INTRON hiw & 1 other
2R	9164356	2R_9164356_SNP [dm3] 2R_13276851_SNP [dm6]	T	G	2.197e^-5	0.603	INTRON Dh31-R
2L	7797329	2L_7797329_SNP [dm3] 2L_7797329_SNP [dm6]	A	T	2.237e^-5	0.603	INTRON Herp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	14913337	X_14913337_DEL [dm3] X_15019304_DEL [dm6]	TATTAGAAAT	T	2.242e^-5	0.603	INTRON hiw	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18463255	2L_18463255_DEL [dm3] 2L_18463255_DEL [dm6]	TC	T	2.247e^-5	0.603	INTRON let-7-C
2R	16743179	2R_16743179_SNP [dm3] 2R_20855674_SNP [dm6]	T	C	2.300e^-5	0.603	INTERGENIC
X	15509970	X_15509970_SNP [dm3] X_15615937_SNP [dm6]	G	C	2.304e^-5	0.603	INTRON sog
2R	3363055	2R_3363055_SNP [dm3] 2R_7475550_SNP [dm6]	A	G	2.320e^-5	0.603	UTR_5_PRIME Aldh-III UPSTREAM Aldh-III
2L	10906341	2L_10906341_SNP [dm3] 2L_10906341_SNP [dm6]	C	A	2.332e^-5	0.603	UTR_3_PRIME CG7309
2L	10711791	2L_10711791_DEL [dm3] 2L_10711791_DEL [dm6]	TA	T	2.355e^-5	0.603	INTERGENIC
X	15509967	X_15509967_DEL [dm3] X_15615934_DEL [dm6]	AA	A	2.369e^-5	0.603	INTRON sog
2L	16362973	2L_16362973_SNP [dm3] 2L_16362973_SNP [dm6]	G	T	2.396e^-5	0.603	INTERGENIC
2R	12047514	2R_12047514_SNP [dm3] 2R_16160009_SNP [dm6]	T	C	2.396e^-5	0.603	INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19304527	2L_19304527_SNP [dm3] 2L_19304527_SNP [dm6]	G	A	2.434e^-5	0.603	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15024544	X_15024544_SNP [dm3] X_15130511_SNP [dm6]	G	T	2.467e^-5	0.603	INTRON drd
2L	11988022	2L_11988022_SNP [dm3] 2L_11988022_SNP [dm6]	C	A	2.469e^-5	0.603	UTR_5_PRIME CG6686 UPSTREAM CG34163 DOWNSTREAM zuc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6610101	2L_6610101_SNP [dm3] 2L_6610101_SNP [dm6]	A	C	2.476e^-5	0.603	UPSTREAM CG11050 INTERGENIC	TF binding site mE1_TFBS_Kr
2L	10659215	2L_10659215_SNP [dm3] 2L_10659215_SNP [dm6]	T	C	2.808e^-5	0.657	DOWNSTREAM CG45690 INTERGENIC
2L	16166888	2L_16166888_INS [dm3] 2L_16166888_INS [dm6]	C	CC	2.811e^-5	0.657	INTRON Ca-alpha1D	TF binding site mE1_TFBS_HSA
2L	11383699	2L_11383699_SNP [dm3] 2L_11383699_SNP [dm6]	G	A	2.837e^-5	0.657	INTERGENIC	regulatory region REDfly_CRMs
X	14919610	X_14919610_SNP [dm3] X_15025577_SNP [dm6]	A	T	2.936e^-5	0.657	INTRON hiw & 1 other
2R	1877446	2R_1877446_SNP [dm3] 2R_5989941_SNP [dm6]	T	A	2.972e^-5	0.657	INTRON Src42A
2R	3391046	2R_3391046_SNP [dm3] 2R_7503541_SNP [dm6]	A	G	2.984e^-5	0.657	INTRON didum	TF binding site mE1_TFBS_cad
2L	10711939	2L_10711939_SNP [dm3] 2L_10711939_SNP [dm6]	G	C	3.088e^-5	0.657	INTERGENIC
2L	4133243	2L_4133243_SNP [dm3] 2L_4133243_SNP [dm6]	T	C	3.109e^-5	0.657	INTERGENIC
2L	4133244	2L_4133244_SNP [dm3] 2L_4133244_SNP [dm6]	G	A	3.109e^-5	0.657	INTERGENIC
X	14661371	X_14661371_SNP [dm3] X_14767338_SNP [dm6]	G	T	3.142e^-5	0.657	INTERGENIC
2R	1916948	2R_1916948_SNP [dm3] 2R_6029443_SNP [dm6]	G	A	3.164e^-5	0.657	SYNONYMOUS_CODING SCAP
2L	3626863	2L_3626863_SNP [dm3] 2L_3626863_SNP [dm6]	G	C	3.185e^-5	0.657	SYNONYMOUS_CODING for INTRON for	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9406278	2L_9406278_SNP [dm3] 2L_9406278_SNP [dm6]	G	A	3.193e^-5	0.657	INTRON Shawl
X	15669386	X_15669386_SNP [dm3] X_15775353_SNP [dm6]	C	G	3.246e^-5	0.657	SYNONYMOUS_CODING CG43672
2L	12614842	2L_12614842_SNP [dm3] 2L_12614842_SNP [dm6]	G	T	3.257e^-5	0.657	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10711784	2L_10711784_SNP [dm3] 2L_10711784_SNP [dm6]	G	A	3.259e^-5	0.657	INTERGENIC
2R	18200536	2R_18200536_SNP [dm3] 2R_22313031_SNP [dm6]	C	A	3.299e^-5	0.658	INTRON CR44758
2L	7797714	2L_7797714_SNP [dm3] 2L_7797714_SNP [dm6]	C	T	3.389e^-5	0.664	SYNONYMOUS_CODING Herp	TF binding site mE1_TFBS_cad
2L	8423893	2L_8423893_SNP [dm3] 2L_8423893_SNP [dm6]	G	C	3.399e^-5	0.664	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3R	15100098	3R_15100098_SNP [dm3] 3R_19274376_SNP [dm6]	A	C	3.448e^-5	0.667	INTERGENIC
X	14661376	X_14661376_SNP [dm3] X_14767343_SNP [dm6]	C	T	3.554e^-5	0.675	INTERGENIC
3L	8704906	3L_8704906_SNP [dm3] 3L_8711806_SNP [dm6]	T	A	3.598e^-5	0.675	INTERGENIC	regulatory region REDfly_CRMs
3R	21994263	3R_21994263_SNP [dm3] 3R_26168541_SNP [dm6]	A	C	3.632e^-5	0.675	INTERGENIC
3R	9589305	3R_9589305_INS [dm3] 3R_13763583_INS [dm6]	G	GCTAG	3.683e^-5	0.675	UTR_3_PRIME CG34383	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12196035	2R_12196035_SNP [dm3] 2R_16308530_SNP [dm6]	A	G	3.750e^-5	0.675	UTR_5_PRIME Nox UPSTREAM Nox	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14919621	X_14919621_SNP [dm3] X_15025588_SNP [dm6]	C	T	3.836e^-5	0.675	INTRON hiw & 1 other
2L	8423793	2L_8423793_SNP [dm3] 2L_8423793_SNP [dm6]	C	G	3.839e^-5	0.675	INTRON Akap200	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	8511655	X_8511655_INS [dm3] X_8617622_INS [dm6]	C	CC	3.864e^-5	0.675	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21448839	3R_21448839_SNP [dm3] 3R_25623117_SNP [dm6]	G	T	3.872e^-5	0.675	SPLICE_SITE_REGION Npl4 INTRON Npl4	TF binding site mE1_TFBS_sens
2R	8485998	2R_8485998_SNP [dm3] 2R_12598493_SNP [dm6]	A	T	3.883e^-5	0.675	INTRON Amph
2L	7804295	2L_7804295_SNP [dm3] 2L_7804295_SNP [dm6]	A	G	3.891e^-5	0.675	UTR_3_PRIME cdc14 INTRON cdc14
2L	11383533	2L_11383533_SNP [dm3] 2L_11383533_SNP [dm6]	C	A	3.949e^-5	0.675	INTERGENIC	regulatory region REDfly_CRMs
3R	13632293	3R_13632293_SNP [dm3] 3R_17806571_SNP [dm6]	T	A	3.959e^-5	0.675	NON_SYNONYMOUS_CODING CG17801 DOWNSTREAM CG7357
3L	14271975	3L_14271975_SNP [dm3] 3L_14278875_SNP [dm6]	A	G	4.027e^-5	0.677	INTRON fz	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4425768	X_4425768_SNP [dm3] X_4531735_SNP [dm6]	C	T	4.040e^-5	0.677	SYNONYMOUS_CODING CG3556 INTRON CR32773
2R	3140205	2R_3140205_SNP [dm3] 2R_7252700_SNP [dm6]	G	T	4.094e^-5	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16363132	2L_16363132_SNP [dm3] 2L_16363132_SNP [dm6]	A	C	4.295e^-5	0.707	INTERGENIC
2L	14366784	2L_14366784_SNP [dm3] 2L_14366784_SNP [dm6]	C	A	4.372e^-5	0.708	UTR_3_PRIME spel1	TF binding site mE1_TFBS_cad
2L	16166881	2L_16166881_INS [dm3] 2L_16166881_INS [dm6]	C	CTCAC	4.377e^-5	0.708	INTRON Ca-alpha1D	TF binding site mE1_TFBS_HSA
2L	5786230	2L_5786230_SNP [dm3] 2L_5786230_SNP [dm6]	G	T	4.572e^-5	0.733	INTRON CG9171	TF binding site BDTNP1_TFBS_twi
2R	2738277	2R_2738277_SNP [dm3] 2R_6850772_SNP [dm6]	G	T	4.765e^-5	0.746	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	14782457	X_14782457_SNP [dm3] X_14888424_SNP [dm6]	A	G	4.785e^-5	0.746	SYNONYMOUS_CODING CG9514 INTRON Flo2
2L	13428904	2L_13428904_SNP [dm3] 2L_13428904_SNP [dm6]	T	C	4.790e^-5	0.746	INTRON CG42784
2L	7177825	2L_7177825_SNP [dm3] 2L_7177825_SNP [dm6]	G	C	4.840e^-5	0.746	DOWNSTREAM CR44613 INTERGENIC
X	14919594	X_14919594_SNP [dm3] X_15025561_SNP [dm6]	T	G	4.849e^-5	0.746	INTRON hiw & 1 other
3L	11366445	3L_11366445_DEL [dm3] 3L_11373345_DEL [dm6]	AA	A	4.974e^-5	0.754	INTERGENIC
2L	8365982	2L_8365982_INS [dm3] 2L_8365982_INS [dm6]	A	ATGCTAC	5.033e^-5	0.754	UPSTREAM Pp2A-29B DOWNSTREAM CSN8 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
X	15083870	X_15083870_SNP [dm3] X_15189837_SNP [dm6]	T	C	5.035e^-5	0.754	UTR_3_PRIME CG43737
2L	10710754	2L_10710754_SNP [dm3] 2L_10710754_SNP [dm6]	G	A	5.083e^-5	0.754	DOWNSTREAM CR44407 INTERGENIC
3R	27165624	3R_27165624_SNP [dm3] 3R_31339902_SNP [dm6]	C	T	5.104e^-5	0.754	INTRON CG34347
2L	7796927	2L_7796927_SNP [dm3] 2L_7796927_SNP [dm6]	C	T	5.142e^-5	0.754	UTR_3_PRIME Herp UPSTREAM LKR DOWNSTREAM CR44825	TF binding site mE1_TFBS_cad
2L	19301391	2L_19301391_SNP [dm3] 2L_19301391_SNP [dm6]	C	T	5.196e^-5	0.754	INTRON CG10750
X	5583854	X_5583854_SNP [dm3] X_5689821_SNP [dm6]	T	A	5.223e^-5	0.754	UPSTREAM cv & 1 other DOWNSTREAM CR45525 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	1911740	2R_1911740_SNP [dm3] 2R_6024235_SNP [dm6]	G	A	5.283e^-5	0.755	INTERGENIC
2L	13995575	2L_13995575_SNP [dm3] 2L_13995575_SNP [dm6]	C	A	5.390e^-5	0.755	INTRON rk
X	2615520	X_2615520_SNP [dm3] X_2721487_SNP [dm6]	T	A	5.495e^-5	0.755	NON_SYNONYMOUS_CODING fs_1_Yb	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	13253329	2L_13253329_SNP [dm3] 2L_13253329_SNP [dm6]	T	G	5.561e^-5	0.755	INTRON CG31728
2R	8484926	2R_8484926_SNP [dm3] 2R_12597421_SNP [dm6]	T	A	5.666e^-5	0.755	INTRON Amph
X	13813432	X_13813432_SNP [dm3] X_13919399_SNP [dm6]	A	G	5.748e^-5	0.755	INTRON mamo
3R	6956393	3R_6956393_SNP [dm3] 3R_11130671_SNP [dm6]	T	C	5.829e^-5	0.755	INTERGENIC
X	15669389	X_15669389_SNP [dm3] X_15775356_SNP [dm6]	G	T	5.845e^-5	0.755	NON_SYNONYMOUS_CODING CG43672
X	3305161	X_3305161_DEL [dm3] X_3411128_DEL [dm6]	TACCACAT	T	5.912e^-5	0.755	INTRON CR44999 & 1 other
2L	6612380	2L_6612380_SNP [dm3] 2L_6612380_SNP [dm6]	T	C	5.913e^-5	0.755	INTRON CG11050	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	16362838	2L_16362838_SNP [dm3] 2L_16362838_SNP [dm6]	T	G	5.935e^-5	0.755	INTERGENIC
2L	12132227	2L_12132227_SNP [dm3] 2L_12132227_SNP [dm6]	A	T	6.070e^-5	0.755	INTRON rho-6
3L	11150944	3L_11150944_SNP [dm3] 3L_11157844_SNP [dm6]	G	T	6.102e^-5	0.755	INTRON CG32082	TF binding site BDTNP1_TFBS_prd
2L	16362145	2L_16362145_SNP [dm3] 2L_16362145_SNP [dm6]	C	G	6.113e^-5	0.755	INTERGENIC
2L	8034210	2L_8034210_SNP [dm3] 2L_8034210_SNP [dm6]	G	T	6.125e^-5	0.755	INTRON CG7367 & 1 other
2R	20062990	2R_20062990_INS [dm3] 2R_24175467_INS [dm6]	C	CC	6.131e^-5	0.755	SPLICE_SITE_REGION Nop60B UPSTREAM snoRNA:Psi18S-1820 INTRON Nop60B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	3626544	2L_3626544_SNP [dm3] 2L_3626544_SNP [dm6]	G	A	6.140e^-5	0.755	SYNONYMOUS_CODING for INTRON for	TF binding site mE1_TFBS_chinmo
2L	13120455	2L_13120455_SNP [dm3] 2L_13120455_SNP [dm6]	G	C	6.224e^-5	0.755	UTR_3_PRIME CG43050
2R	13364759	2R_13364759_SNP [dm3] 2R_17477254_SNP [dm6]	T	C	6.254e^-5	0.755	UPSTREAM CG6520 & 1 other DOWNSTREAM CG43110 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	24540387	3R_24540387_SNP [dm3] 3R_28714665_SNP [dm6]	C	T	6.267e^-5	0.755	SPLICE_SITE_REGION htt INTRON htt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	7669256	2L_7669256_SNP [dm3] 2L_7669256_SNP [dm6]	G	A	6.286e^-5	0.755	INTRON Slob & 1 other
3R	15582954	3R_15582954_INS [dm3] 3R_19757232_INS [dm6]	A	AA	6.294e^-5	0.755	INTRON GluClalpha
2L	19291932	2L_19291932_INS [dm3] 2L_19291932_INS [dm6]	A	ACA	6.395e^-5	0.755	INTERGENIC
2L	16182733	2L_16182733_SNP [dm3] 2L_16182733_SNP [dm6]	C	T	6.398e^-5	0.755	INTRON Ca-alpha1D
2L	11508472	2L_11508472_SNP [dm3] 2L_11508472_SNP [dm6]	T	C	6.464e^-5	0.755	UTR_3_PRIME spz4 & 1 other DOWNSTREAM CG6509
3R	15365665	3R_15365665_SNP [dm3] 3R_19539943_SNP [dm6]	C	A	6.536e^-5	0.755	INTRON Dys
2L	19301370	2L_19301370_SNP [dm3] 2L_19301370_SNP [dm6]	C	T	6.649e^-5	0.755	INTRON CG10750
X	15446239	X_15446239_INS [dm3] X_15552206_INS [dm6]	T	TTAATTGAGCATC...	6.688e^-5	0.755	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11100389	2L_11100389_SNP [dm3] 2L_11100389_SNP [dm6]	G	T	6.689e^-5	0.755	SYNONYMOUS_CODING Ge-1 DOWNSTREAM Reps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19299427	2L_19299427_SNP [dm3] 2L_19299427_SNP [dm6]	C	G	6.762e^-5	0.755	SYNONYMOUS_CODING CG17564 UPSTREAM CG10750
2R	1910231	2R_1910231_SNP [dm3] 2R_6022726_SNP [dm6]	G	C	6.784e^-5	0.755	NON_SYNONYMOUS_CODING dream	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12286695	2L_12286695_INS [dm3] 2L_12286695_INS [dm6]	A	AAACAACTCA	6.826e^-5	0.755	UPSTREAM aret INTRON aret
X	15076784	X_15076784_SNP [dm3] X_15182751_SNP [dm6]	A	T	6.829e^-5	0.755	INTRON CG43737
2L	7796930	2L_7796930_SNP [dm3] 2L_7796930_SNP [dm6]	C	T	6.891e^-5	0.755	SYNONYMOUS_STOP Herp UPSTREAM LKR DOWNSTREAM CR44825	TF binding site mE1_TFBS_cad
2L	18463295	2L_18463295_SNP [dm3] 2L_18463295_SNP [dm6]	A	G	6.894e^-5	0.755	INTRON let-7-C
2L	19301027	2L_19301027_SNP [dm3] 2L_19301027_SNP [dm6]	T	C	6.919e^-5	0.755	INTRON CG10750	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	14919603	X_14919603_SNP [dm3] X_15025570_SNP [dm6]	A	T	6.955e^-5	0.755	INTRON hiw & 1 other
2R	11809299	2R_11809299_INS [dm3] 2R_15921794_INS [dm6]	G	GCGATTTG	7.004e^-5	0.755	UTR_5_PRIME sli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13848840	3R_13848840_SNP [dm3] 3R_18023118_SNP [dm6]	A	C	7.029e^-5	0.755	UTR_3_PRIME CG7785 UPSTREAM CG7794
3R	20761947	3R_20761947_SNP [dm3] 3R_24936225_SNP [dm6]	T	G	7.094e^-5	0.755	INTRON Osbp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	4697126	3L_4697126_SNP [dm3] 3L_4697126_SNP [dm6]	A	G	7.114e^-5	0.755	UPSTREAM CG13713 INTRON RhoGEF64C	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	8423923	2L_8423923_SNP [dm3] 2L_8423923_SNP [dm6]	T	A	7.249e^-5	0.755	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
2L	11382743	2L_11382743_SNP [dm3] 2L_11382743_SNP [dm6]	G	A	7.287e^-5	0.755	INTERGENIC	regulatory region REDfly_CRMs
2L	12547353	2L_12547353_SNP [dm3] 2L_12547353_SNP [dm6]	G	T	7.317e^-5	0.755	UPSTREAM bun INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	15082597	X_15082597_SNP [dm3] X_15188564_SNP [dm6]	G	A	7.353e^-5	0.755	UTR_3_PRIME CG43737
2L	7798056	2L_7798056_DEL [dm3] 2L_7798056_DEL [dm6]	GTATTCGCTATCGAG...	G	7.474e^-5	0.755	INTRON Herp
3R	2780012	3R_2780012_SNP [dm3] 3R_6954290_SNP [dm6]	T	C	7.585e^-5	0.755	INTRON Antp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11917775	2L_11917775_SNP [dm3] 2L_11917775_SNP [dm6]	A	C	7.640e^-5	0.755	INTRON Pde1c
2L	8980650	2L_8980650_SNP [dm3] 2L_8980650_SNP [dm6]	C	A	7.679e^-5	0.755	UPSTREAM CG18662 INTRON CG13101
2L	11377083	2L_11377083_SNP [dm3] 2L_11377083_SNP [dm6]	C	T	7.701e^-5	0.755	INTERGENIC	regulatory region REDfly_CRMs
2L	10711827	2L_10711827_SNP [dm3] 2L_10711827_SNP [dm6]	T	C	7.781e^-5	0.755	INTERGENIC
2L	11374763	2L_11374763_SNP [dm3] 2L_11374763_SNP [dm6]	A	T	7.791e^-5	0.755	INTERGENIC	regulatory region REDfly_CRMs
2R	5095554	2R_5095554_DEL [dm3] 2R_9208049_DEL [dm6]	GG	G	7.794e^-5	0.755	UPSTREAM CG8027 INTRON VhaAC45	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	18443456	2L_18443456_DEL [dm3] 2L_18443456_DEL [dm6]	GG	G	7.813e^-5	0.755	UPSTREAM RpS26 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run
2L	19307084	2L_19307084_SNP [dm3] 2L_19307084_SNP [dm6]	C	T	7.814e^-5	0.755	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6586580	2R_6586580_SNP [dm3] 2R_10699075_SNP [dm6]	A	C	7.820e^-5	0.755	INTRON stan
3R	18163652	3R_18163652_DEL [dm3] 3R_22337930_DEL [dm6]	ACATA	A	7.865e^-5	0.755	INTRON CG5388
2L	18451362	2L_18451362_SNP [dm3] 2L_18451362_SNP [dm6]	C	T	7.886e^-5	0.755	SYNONYMOUS_CODING bsf	TF binding site mE1_TFBS_cad
2L	12132477	2L_12132477_SNP [dm3] 2L_12132477_SNP [dm6]	T	C	7.888e^-5	0.755	INTRON rho-6
2L	19306774	2L_19306774_SNP [dm3] 2L_19306774_SNP [dm6]	G	A	8.005e^-5	0.755	INTERGENIC
2L	19320585	2L_19320585_SNP [dm3] 2L_19320585_SNP [dm6]	C	G	8.056e^-5	0.755	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3R	26689933	3R_26689933_SNP [dm3] 3R_30864211_SNP [dm6]	G	A	8.059e^-5	0.755	INTERGENIC	TF binding site mE1_TFBS_cad
3L	12626539	3L_12626539_SNP [dm3] 3L_12633439_SNP [dm6]	G	A	8.065e^-5	0.755	EXON CR32111	TF binding site mE1_TFBS_cad
2L	12132474	2L_12132474_SNP [dm3] 2L_12132474_SNP [dm6]	G	A	8.076e^-5	0.755	INTRON rho-6
2L	12287341	2L_12287341_SNP [dm3] 2L_12287341_SNP [dm6]	G	A	8.189e^-5	0.755	UTR_5_PRIME aret INTRON aret
3R	26806562	3R_26806562_SNP [dm3] 3R_30980840_SNP [dm6]	T	G	8.293e^-5	0.755	INTRON 5-HT7
X	14919656	X_14919656_SNP [dm3] X_15025623_SNP [dm6]	C	T	8.304e^-5	0.755	INTRON hiw & 1 other
2R	6947625	2R_6947625_SNP [dm3] 2R_11060120_SNP [dm6]	C	G	8.377e^-5	0.755	INTRON luna
X	6245255	X_6245255_DEL [dm3] X_6351222_DEL [dm6]	TC	T	8.384e^-5	0.755	UPSTREAM CG3446 INTRON kdn
3L	6651318	3L_6651318_SNP [dm3] 3L_6658218_SNP [dm6]	A	G	8.411e^-5	0.755	INTERGENIC
2L	18498204	2L_18498204_SNP [dm3] 2L_18498204_SNP [dm6]	T	G	8.424e^-5	0.755	INTRON kon
2R	7530816	2R_7530816_SNP [dm3] 2R_11643311_SNP [dm6]	A	G	8.478e^-5	0.755	INTRON CG9003
X	16609988	X_16609988_SNP [dm3] X_16715955_SNP [dm6]	T	A	8.543e^-5	0.755	INTRON CG34325
2R	5209078	2R_5209078_DEL [dm3] 2R_9321573_DEL [dm6]	GG	G	8.560e^-5	0.755	INTRON CG13954 & 1 other
2R	14575160	2R_14575160_SNP [dm3] 2R_18687655_SNP [dm6]	C	T	8.573e^-5	0.755	SYNONYMOUS_CODING CG42855 UPSTREAM CG44433 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	19306743	2L_19306743_SNP [dm3] 2L_19306743_SNP [dm6]	C	A	8.594e^-5	0.755	INTERGENIC
3L	12316391	3L_12316391_SNP [dm3] 3L_12323291_SNP [dm6]	A	T	8.611e^-5	0.755	INTERGENIC
2L	19301376	2L_19301376_SNP [dm3] 2L_19301376_SNP [dm6]	G	A	8.631e^-5	0.755	INTRON CG10750
2L	19301401	2L_19301401_SNP [dm3] 2L_19301401_SNP [dm6]	C	T	8.631e^-5	0.755	SPLICE_SITE_ACCEPTOR CG10750 SPLICE_SITE_REGION CG10750 SYNONYMOUS_CODING CG10750 INTRON CG10750
2R	11170347	2R_11170347_SNP [dm3] 2R_15282842_SNP [dm6]	A	C	8.666e^-5	0.755	INTRON Trpm
X	6933740	X_6933740_SNP [dm3] X_7039707_SNP [dm6]	C	T	8.728e^-5	0.755	UPSTREAM CG14427 INTRON CG12541	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11432146	2L_11432146_SNP [dm3] 2L_11432146_SNP [dm6]	A	G	8.754e^-5	0.755	INTERGENIC
2R	16737045	2R_16737045_SNP [dm3] 2R_20849540_SNP [dm6]	A	G	8.807e^-5	0.755	DOWNSTREAM CG9993 INTRON CG17999	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10897169	2L_10897169_SNP [dm3] 2L_10897169_SNP [dm6]	A	T	8.822e^-5	0.755	INTERGENIC
2L	8246848	2L_8246848_SNP [dm3] 2L_8246848_SNP [dm6]	G	T	8.854e^-5	0.755	INTRON CG8086
3L	2131091	3L_2131091_SNP [dm3] 3L_2131091_SNP [dm6]	T	G	8.902e^-5	0.755	SYNONYMOUS_CODING zormin	TF binding site mE1_TFBS_cad
3L	14998967	3L_14998967_SNP [dm3] 3L_15005867_SNP [dm6]	A	T	8.944e^-5	0.755	INTRON Reck
2L	10711803	2L_10711803_DEL [dm3] 2L_10711803_DEL [dm6]	TATCAAAAATGT...	T	8.963e^-5	0.755	INTERGENIC
X	14919669	X_14919669_INS [dm3] X_15025636_INS [dm6]	C	CTG	8.971e^-5	0.755	INTRON hiw & 1 other
2L	14596230	2L_14596230_SNP [dm3] 2L_14596230_SNP [dm6]	A	G	8.975e^-5	0.755	INTERGENIC
X	15087801	X_15087801_INS [dm3] X_15193768_INS [dm6]	A	AGTATG	8.978e^-5	0.755	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	15087805	X_15087805_INS [dm3] X_15193772_INS [dm6]	A	AGAGTAT	8.978e^-5	0.755	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	8912365	2R_8912365_SNP [dm3] 2R_13024860_SNP [dm6]	A	C	9.042e^-5	0.755	INTERGENIC
2L	14575464	2L_14575464_SNP [dm3] 2L_14575464_SNP [dm6]	A	T	9.111e^-5	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	13155533	2L_13155533_SNP [dm3] 2L_13155533_SNP [dm6]	G	T	9.126e^-5	0.755	INTERGENIC
2R	16743203	2R_16743203_SNP [dm3] 2R_20855698_SNP [dm6]	A	C	9.165e^-5	0.755	INTERGENIC
3R	8517892	3R_8517892_SNP [dm3] 3R_12692170_SNP [dm6]	C	T	9.217e^-5	0.755	SYNONYMOUS_CODING CG31347 UPSTREAM Su_fu_ INTRON Arp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	13415483	X_13415483_SNP [dm3] X_13521450_SNP [dm6]	T	C	9.237e^-5	0.755	INTRON Neto
3L	14135048	3L_14135048_SNP [dm3] 3L_14141948_SNP [dm6]	G	A	9.254e^-5	0.755	INTERGENIC	regulatory region REDfly_CRMs
2L	2818539	2L_2818539_SNP [dm3] 2L_2818539_SNP [dm6]	C	T	9.308e^-5	0.755	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19306778	2L_19306778_DEL [dm3] 2L_19306778_DEL [dm6]	AA	A	9.338e^-5	0.755	INTERGENIC
X	15024886	X_15024886_DEL [dm3] X_15130853_DEL [dm6]	CGGATTTATAGTC...	C	9.340e^-5	0.755	INTRON drd
3R	21718127	3R_21718127_SNP [dm3] 3R_25892405_SNP [dm6]	G	A	9.398e^-5	0.757	INTRON Lnk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13564228	2R_13564228_SNP [dm3] 2R_17676723_SNP [dm6]	A	T	9.508e^-5	0.76	INTRON Sema-1b	TF binding site mE1_TFBS_cad
2R	8484995	2R_8484995_SNP [dm3] 2R_12597490_SNP [dm6]	A	G	9.533e^-5	0.76	INTRON Amph
X	14919572	X_14919572_SNP [dm3] X_15025539_SNP [dm6]	G	A	9.602e^-5	0.76	INTRON hiw & 1 other
X	2770134	X_2770134_SNP [dm3] X_2876101_SNP [dm6]	G	A	9.614e^-5	0.76	SYNONYMOUS_CODING CG14417 INTRON kirre	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7795981	2L_7795981_SNP [dm3] 2L_7795981_SNP [dm6]	A	G	9.716e^-5	0.76	UPSTREAM LKR DOWNSTREAM Herp EXON CR44825
2L	8106716	2L_8106716_SNP [dm3] 2L_8106716_SNP [dm6]	G	A	9.788e^-5	0.76	INTRON Bsg
2L	16358583	2L_16358583_SNP [dm3] 2L_16358583_SNP [dm6]	A	C	9.851e^-5	0.76	INTERGENIC
2R	17564884	2R_17564884_SNP [dm3] 2R_21677379_SNP [dm6]	C	G	9.919e^-5	0.76	INTRON CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6310042	X_6310042_DEL [dm3] X_6416009_DEL [dm6]	CTTATTTT	C	9.954e^-5	0.76	INTERGENIC
2L	13155550	2L_13155550_SNP [dm3] 2L_13155550_SNP [dm6]	C	A	1.000e^-4	0.76	INTERGENIC
2R	14807476	2R_14807476_SNP [dm3] 2R_18919971_SNP [dm6]	T	G	1.014e^-4	0.76	INTRON sano
2R	1874679	2R_1874679_SNP [dm3] 2R_5987174_SNP [dm6]	C	T	1.016e^-4	0.76	INTRON Src42A
2R	11812118	2R_11812118_SNP [dm3] 2R_15924613_SNP [dm6]	C	T	1.023e^-4	0.76	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8770554	2L_8770554_SNP [dm3] 2L_8770554_SNP [dm6]	A	G	1.030e^-4	0.76	SYNONYMOUS_CODING CG9465	TF binding site mE1_TFBS_sens
X	15446858	X_15446858_SNP [dm3] X_15552825_SNP [dm6]	C	G	1.031e^-4	0.76	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18954608	2R_18954608_SNP [dm3] 2R_23067085_SNP [dm6]	T	C	1.032e^-4	0.76	UTR_3_PRIME PPO3 UPSTREAM l_2_k09913	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	1398585	3L_1398585_INS [dm3] 3L_1398585_INS [dm6]	A	AG	1.036e^-4	0.76	UTR_5_PRIME CG32320 DOWNSTREAM tRNA:E4:62Aa & 3 others INTRON Ptp61F
X	16731851	X_16731851_SNP [dm3] X_16837818_SNP [dm6]	A	T	1.036e^-4	0.76	DOWNSTREAM RSG7 INTERGENIC
2L	18462800	2L_18462800_SNP [dm3] 2L_18462800_SNP [dm6]	G	C	1.037e^-4	0.76	INTRON let-7-C	TF binding site mE1_TFBS_kn
3L	16448350	3L_16448350_SNP [dm3] 3L_16455250_SNP [dm6]	A	G	1.051e^-4	0.76	INTRON CG33158	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14333457	X_14333457_SNP [dm3] X_14439424_SNP [dm6]	G	A	1.054e^-4	0.76	INTRON dpr8
X	15086744	X_15086744_SNP [dm3] X_15192711_SNP [dm6]	A	G	1.061e^-4	0.76	INTERGENIC
2L	8366896	2L_8366896_DEL [dm3] 2L_8366896_DEL [dm6]	AA	A	1.063e^-4	0.76	INTRON Pp2A-29B	TF binding site BDTNP1_TFBS_dl
3R	15132736	3R_15132736_SNP [dm3] 3R_19307014_SNP [dm6]	C	T	1.069e^-4	0.76	INTRON Dl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6696028	X_6696028_INS [dm3] X_6801995_INS [dm6]	G	GAG	1.069e^-4	0.76	INTRON C3G	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	11105485	2R_11105485_SNP [dm3] 2R_15217980_SNP [dm6]	A	G	1.072e^-4	0.76	UPSTREAM CG8079 & 1 other DOWNSTREAM CR44463 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	16362249	2L_16362249_SNP [dm3] 2L_16362249_SNP [dm6]	A	T	1.073e^-4	0.76	INTERGENIC
3R	13632119	3R_13632119_SNP [dm3] 3R_17806397_SNP [dm6]	C	A	1.079e^-4	0.76	NON_SYNONYMOUS_CODING CG17801
2R	15557567	2R_15557567_SNP [dm3] 2R_19670062_SNP [dm6]	A	T	1.079e^-4	0.76	UPSTREAM hrg & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
3R	25193183	3R_25193183_SNP [dm3] 3R_29367461_SNP [dm6]	C	G	1.082e^-4	0.76	INTERGENIC
X	14909392	X_14909392_DEL [dm3] X_15015359_DEL [dm6]	GTTA	G	1.085e^-4	0.76	INTRON hiw	TF binding site mE1_TFBS_chinmo
X	16607127	X_16607127_SNP [dm3] X_16713094_SNP [dm6]	G	A	1.086e^-4	0.76	SYNONYMOUS_CODING CG13008	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10710709	2L_10710709_SNP [dm3] 2L_10710709_SNP [dm6]	A	G	1.087e^-4	0.76	EXON CR44407
2L	8423804	2L_8423804_SNP [dm3] 2L_8423804_SNP [dm6]	A	G	1.092e^-4	0.76	INTRON Akap200	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	2727408	3L_2727408_SNP [dm3] 3L_2727408_SNP [dm6]	C	T	1.093e^-4	0.76	INTRON Mrtf
X	14919650	X_14919650_SNP [dm3] X_15025617_SNP [dm6]	G	C	1.096e^-4	0.76	INTRON hiw & 1 other
2R	8485002	2R_8485002_SNP [dm3] 2R_12597497_SNP [dm6]	T	C	1.100e^-4	0.76	INTRON Amph
2R	11170575	2R_11170575_SNP [dm3] 2R_15283070_SNP [dm6]	A	G	1.108e^-4	0.76	INTRON Trpm
2R	7311688	2R_7311688_SNP [dm3] 2R_11424183_SNP [dm6]	G	A	1.114e^-4	0.76	INTRON Drip
3L	7324710	3L_7324710_SNP [dm3] 3L_7331610_SNP [dm6]	C	T	1.115e^-4	0.76	SYNONYMOUS_CODING mus312 UTR_3_PRIME mus312 & 1 other	TF binding site mE1_TFBS_sens
2L	12286759	2L_12286759_DEL [dm3] 2L_12286759_DEL [dm6]	AATGGC	A	1.117e^-4	0.76	UPSTREAM aret INTRON aret
2L	6749997	2L_6749997_SNP [dm3] 2L_6749997_SNP [dm6]	T	G	1.118e^-4	0.76	INTRON CG11221
2L	19701207	2L_19701207_SNP [dm3] 2L_19701207_SNP [dm6]	G	C	1.131e^-4	0.76	UPSTREAM scw INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18169724	X_18169724_SNP [dm3] X_18275691_SNP [dm6]	T	C	1.132e^-4	0.76	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8982095	2L_8982095_SNP [dm3] 2L_8982095_SNP [dm6]	T	C	1.133e^-4	0.76	DOWNSTREAM CG18662 INTRON CG13101
2R	18954609	2R_18954609_SNP [dm3] 2R_23067086_SNP [dm6]	T	C	1.136e^-4	0.76	UTR_3_PRIME PPO3 UPSTREAM l_2_k09913	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	16607838	X_16607838_SNP [dm3] X_16713805_SNP [dm6]	C	A	1.141e^-4	0.76	SYNONYMOUS_CODING CG13008 DOWNSTREAM CG34325	TF binding site mE1_TFBS_cad
2R	12047545	2R_12047545_SNP [dm3] 2R_16160040_SNP [dm6]	C	T	1.145e^-4	0.76	INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4721277	2R_4721277_SNP [dm3] 2R_8833772_SNP [dm6]	G	T	1.145e^-4	0.76	INTRON sns	TF binding site mE1_TFBS_cad
2R	6199673	2R_6199673_SNP [dm3] 2R_10312168_SNP [dm6]	G	A	1.152e^-4	0.76	UPSTREAM Obp46a INTERGENIC
2L	8939943	2L_8939943_SNP [dm3] 2L_8939943_SNP [dm6]	G	C	1.158e^-4	0.76	NON_SYNONYMOUS_CODING CG9510 DOWNSTREAM Tsp29Fb
3R	20761962	3R_20761962_SNP [dm3] 3R_24936240_SNP [dm6]	T	A	1.159e^-4	0.76	INTRON Osbp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	26729250	3R_26729250_SNP [dm3] 3R_30903528_SNP [dm6]	A	G	1.162e^-4	0.76	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	8417564	2R_8417564_SNP [dm3] 2R_12530059_SNP [dm6]	A	C	1.163e^-4	0.76	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13115683	2L_13115683_SNP [dm3] 2L_13115683_SNP [dm6]	T	C	1.173e^-4	0.761	INTERGENIC
2L	7797612	2L_7797612_SNP [dm3] 2L_7797612_SNP [dm6]	A	G	1.173e^-4	0.761	SYNONYMOUS_CODING Herp	TF binding site mE1_TFBS_cad
3R	26462675	3R_26462675_SNP [dm3] 3R_30636953_SNP [dm6]	A	G	1.180e^-4	0.761	INTERGENIC
2L	18463259	2L_18463259_SNP [dm3] 2L_18463259_SNP [dm6]	A	G	1.183e^-4	0.761	INTRON let-7-C
3R	9862147	3R_9862147_SNP [dm3] 3R_14036425_SNP [dm6]	C	A	1.187e^-4	0.761	UPSTREAM CG9922 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12720515	2L_12720515_SNP [dm3] 2L_12720515_SNP [dm6]	C	T	1.189e^-4	0.761	INTRON CG5792 & 1 other	TF binding site mE1_TFBS_cad
2L	13046396	2L_13046396_SNP [dm3] 2L_13046396_SNP [dm6]	G	A	1.198e^-4	0.765	INTRON CG9932
X	4778967	X_4778967_SNP [dm3] X_4884934_SNP [dm6]	T	C	1.213e^-4	0.769	INTRON CG42594
2L	10713632	2L_10713632_SNP [dm3] 2L_10713632_SNP [dm6]	G	A	1.213e^-4	0.769	INTERGENIC
3L	14152142	3L_14152142_INS [dm3] 3L_14159042_INS [dm6]	T	TT	1.228e^-4	0.772	INTERGENIC	regulatory region REDfly_CRMs
2L	13428931	2L_13428931_INS [dm3] 2L_13428931_INS [dm6]	G	GAGGGGCG	1.234e^-4	0.772	INTRON CG42784
2R	10201240	2R_10201240_SNP [dm3] 2R_14313735_SNP [dm6]	A	T	1.242e^-4	0.772	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16118940	3R_16118940_SNP [dm3] 3R_20293218_SNP [dm6]	A	G	1.246e^-4	0.772	UPSTREAM cic INTRON cic	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	1738816	3L_1738816_SNP [dm3] 3L_1738816_SNP [dm6]	T	A	1.248e^-4	0.772	UPSTREAM CG18173 & 1 other INTRON Gk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
X	6933763	X_6933763_INS [dm3] X_7039730_INS [dm6]	A	AA	1.249e^-4	0.772	UPSTREAM CG14427 INTRON CG12541	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9411381	2R_9411381_SNP [dm3] 2R_13523876_SNP [dm6]	A	G	1.250e^-4	0.772	DOWNSTREAM CG13331 INTRON Vmat
2R	11170603	2R_11170603_SNP [dm3] 2R_15283098_SNP [dm6]	T	A	1.251e^-4	0.772	INTRON Trpm
2L	12286774	2L_12286774_SNP [dm3] 2L_12286774_SNP [dm6]	A	G	1.269e^-4	0.775	UPSTREAM aret INTRON aret
2L	19301431	2L_19301431_SNP [dm3] 2L_19301431_SNP [dm6]	C	T	1.276e^-4	0.775	SYNONYMOUS_CODING CG10750
2L	10659356	2L_10659356_SNP [dm3] 2L_10659356_SNP [dm6]	T	A	1.277e^-4	0.775	DOWNSTREAM CG45690 INTERGENIC
2R	8484964	2R_8484964_SNP [dm3] 2R_12597459_SNP [dm6]	G	A	1.279e^-4	0.775	INTRON Amph
X	14919667	X_14919667_SNP [dm3] X_15025634_SNP [dm6]	C	T	1.285e^-4	0.775	INTRON hiw & 1 other
2L	16363081	2L_16363081_SNP [dm3] 2L_16363081_SNP [dm6]	G	A	1.288e^-4	0.775	INTERGENIC
X	14913284	X_14913284_SNP [dm3] X_15019251_SNP [dm6]	A	C	1.291e^-4	0.775	INTRON hiw	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6933747	X_6933747_DEL [dm3] X_7039714_DEL [dm6]	ATCACGCAC	A	1.298e^-4	0.775	UPSTREAM CG14427 INTRON CG12541	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7599798	3L_7599798_SNP [dm3] 3L_7606698_SNP [dm6]	G	A	1.302e^-4	0.775	INTRON CG33275
3L	10283292	3L_10283292_SNP [dm3] 3L_10290192_SNP [dm6]	G	C	1.311e^-4	0.775	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	10895317	2L_10895317_SNP [dm3] 2L_10895317_SNP [dm6]	T	C	1.320e^-4	0.775	EXON CR44491
2R	14655615	2R_14655615_SNP [dm3] 2R_18768110_SNP [dm6]	A	C	1.323e^-4	0.775	INTRON Mctp	TF binding site mE1_TFBS_chinmo
2L	10514378	2L_10514378_SNP [dm3] 2L_10514378_SNP [dm6]	A	G	1.325e^-4	0.775	INTRON Fatp & 1 other
3L	12611541	3L_12611541_SNP [dm3] 3L_12618441_SNP [dm6]	A	G	1.331e^-4	0.775	SYNONYMOUS_CODING caup
X	4808093	X_4808093_SNP [dm3] X_4914060_SNP [dm6]	A	G	1.332e^-4	0.775	SYNONYMOUS_CODING CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19204602	2R_19204602_SNP [dm3] 2R_23317079_SNP [dm6]	C	G	1.334e^-4	0.775	INTERGENIC
2L	16360617	2L_16360617_SNP [dm3] 2L_16360617_SNP [dm6]	G	A	1.338e^-4	0.775	INTERGENIC
3R	17790853	3R_17790853_SNP [dm3] 3R_21965131_SNP [dm6]	C	A	1.343e^-4	0.775	INTRON Eip93F
X	16050833	X_16050833_SNP [dm3] X_16156800_SNP [dm6]	T	C	1.346e^-4	0.775	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9832149	2R_9832149_INS [dm3] 2R_13944644_INS [dm6]	T	TTATCT	1.347e^-4	0.775	UTR_3_PRIME AGO1 DOWNSTREAM AGO1	TF binding site BDTNP1_TFBS_dl
2R	9164276	2R_9164276_SNP [dm3] 2R_13276771_SNP [dm6]	A	G	1.352e^-4	0.775	INTRON Dh31-R
3L	14135090	3L_14135090_INS [dm3] 3L_14141990_INS [dm6]	G	GG	1.354e^-4	0.775	INTERGENIC	regulatory region REDfly_CRMs
X	6933730	X_6933730_SNP [dm3] X_7039697_SNP [dm6]	T	C	1.362e^-4	0.775	UPSTREAM CG14427 INTRON CG12541	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19306794	2L_19306794_SNP [dm3] 2L_19306794_SNP [dm6]	C	G	1.364e^-4	0.775	INTERGENIC
2L	19307030	2L_19307030_SNP [dm3] 2L_19307030_SNP [dm6]	T	C	1.365e^-4	0.775	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18893757	2R_18893757_SNP [dm3] 2R_23006234_SNP [dm6]	T	C	1.365e^-4	0.775	INTRON twi
3R	7424106	3R_7424106_SNP [dm3] 3R_11598384_SNP [dm6]	T	C	1.368e^-4	0.775	INTRON Jupiter
3R	9589313	3R_9589313_SNP [dm3] 3R_13763591_SNP [dm6]	A	G	1.373e^-4	0.776	UTR_3_PRIME CG34383	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	18994235	X_18994235_SNP [dm3] X_19100202_SNP [dm6]	A	G	1.392e^-4	0.783	INTERGENIC
2R	14655280	2R_14655280_SNP [dm3] 2R_18767775_SNP [dm6]	T	A	1.402e^-4	0.783	INTRON Mctp
2L	19306782	2L_19306782_SNP [dm3] 2L_19306782_SNP [dm6]	G	T	1.403e^-4	0.783	INTERGENIC
3L	2911145	3L_2911145_SNP [dm3] 3L_2911145_SNP [dm6]	C	A	1.403e^-4	0.783	INTRON Shab
2L	8968391	2L_8968391_INS [dm3] 2L_8968391_INS [dm6]	A	ACATATTTATATAGATA...	1.417e^-4	0.789	INTRON CG18088
X	5583785	X_5583785_SNP [dm3] X_5689752_SNP [dm6]	G	A	1.428e^-4	0.793	UPSTREAM cv & 1 other DOWNSTREAM CR45525 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	11427649	2L_11427649_DEL [dm3] 2L_11427649_DEL [dm6]	CTTCTTCCA	C	1.433e^-4	0.793	INTERGENIC
3L	14342030	3L_14342030_SNP [dm3] 3L_14348930_SNP [dm6]	T	G	1.438e^-4	0.793	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13110792	2L_13110792_INS [dm3] 2L_13110792_INS [dm6]	T	TTA	1.444e^-4	0.793	INTERGENIC
2R	7789245	2R_7789245_DEL [dm3] 2R_11901740_DEL [dm6]	GG	G	1.445e^-4	0.793	DOWNSTREAM Zip48C INTRON MCPH1	TF binding site mE1_TFBS_sens
2R	14655425	2R_14655425_INS [dm3] 2R_18767920_INS [dm6]	T	TATAGTA	1.453e^-4	0.794	INTRON Mctp
3R	2861434	3R_2861434_SNP [dm3] 3R_7035712_SNP [dm6]	A	G	1.456e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	11709308	2L_11709308_SNP [dm3] 2L_11709308_SNP [dm6]	A	G	1.465e^-4	0.797	INTERGENIC
3L	8568506	3L_8568506_SNP [dm3] 3L_8575406_SNP [dm6]	C	T	1.486e^-4	0.806	SYNONYMOUS_CODING CG6638 DOWNSTREAM rhea	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16737046	2R_16737046_DEL [dm3] 2R_20849541_DEL [dm6]	GG	G	1.492e^-4	0.806	DOWNSTREAM CG9993 INTRON CG17999	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10916739	2L_10916739_SNP [dm3] 2L_10916739_SNP [dm6]	G	T	1.499e^-4	0.806	DOWNSTREAM dpr2 INTERGENIC
3R	26658021	3R_26658021_SNP [dm3] 3R_30832299_SNP [dm6]	T	C	1.502e^-4	0.806	INTRON CG15544
2L	10710741	2L_10710741_SNP [dm3] 2L_10710741_SNP [dm6]	A	T	1.507e^-4	0.806	DOWNSTREAM CR44407 INTERGENIC
2R	18205033	2R_18205033_SNP [dm3] 2R_22317528_SNP [dm6]	T	C	1.508e^-4	0.806	UPSTREAM Gp150 DOWNSTREAM CR44758 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	852801	2R_852801_SNP [dm3] 2R_4965296_SNP [dm6]	T	G	1.520e^-4	0.81	INTRON Ir41a	transposable element FlyBase
2L	8364630	2L_8364630_INS [dm3] 2L_8364630_INS [dm6]	T	TT	1.538e^-4	0.817	UTR_5_PRIME RpS13 UPSTREAM CSN8 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	8714498	3L_8714498_SNP [dm3] 3L_8721398_SNP [dm6]	G	A	1.547e^-4	0.82	UTR_5_PRIME CG6511 UPSTREAM CG6511 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9507907	2L_9507907_SNP [dm3] 2L_9507907_SNP [dm6]	A	C	1.558e^-4	0.82	INTRON CG33298
3L	11510891	3L_11510891_SNP [dm3] 3L_11517791_SNP [dm6]	G	A	1.560e^-4	0.82	NON_SYNONYMOUS_CODING CG7512	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	3097270	2R_3097270_SNP [dm3] 2R_7209765_SNP [dm6]	A	T	1.561e^-4	0.82	INTRON pk
3L	819852	3L_819852_SNP [dm3] 3L_819852_SNP [dm6]	G	T	1.572e^-4	0.823	UPSTREAM CR43883 INTERGENIC
2L	10710319	2L_10710319_DEL [dm3] 2L_10710319_DEL [dm6]	CC	C	1.577e^-4	0.823	UPSTREAM Lip2 EXON CR44407
2L	12132543	2L_12132543_SNP [dm3] 2L_12132543_SNP [dm6]	C	T	1.580e^-4	0.823	INTRON rho-6
X	14913303	X_14913303_SNP [dm3] X_15019270_SNP [dm6]	T	C	1.594e^-4	0.823	INTRON hiw	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14088138	3L_14088138_SNP [dm3] 3L_14095038_SNP [dm6]	A	G	1.594e^-4	0.823	SYNONYMOUS_CODING Fbp1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3391294	2R_3391294_SNP [dm3] 2R_7503789_SNP [dm6]	A	G	1.597e^-4	0.823	INTRON didum	TF binding site mE1_TFBS_cad
2R	12047523	2R_12047523_SNP [dm3] 2R_16160018_SNP [dm6]	A	G	1.602e^-4	0.823	INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5583569	X_5583569_SNP [dm3] X_5689536_SNP [dm6]	T	C	1.602e^-4	0.823	UPSTREAM cv & 1 other DOWNSTREAM CR45525 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	20592760	3R_20592760_SNP [dm3] 3R_24767038_SNP [dm6]	T	G	1.615e^-4	0.826	DOWNSTREAM CR45650 INTERGENIC
2L	3537726	2L_3537726_SNP [dm3] 2L_3537726_SNP [dm6]	G	A	1.616e^-4	0.826	UPSTREAM CR44308 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	16017997	2R_16017997_SNP [dm3] 2R_20130492_SNP [dm6]	A	G	1.645e^-4	0.838	INTERGENIC
3L	12606096	3L_12606096_SNP [dm3] 3L_12612996_SNP [dm6]	T	G	1.654e^-4	0.839	INTRON caup	silencer mE1_HDAC_PRE
3R	9275265	3R_9275265_SNP [dm3] 3R_13449543_SNP [dm6]	T	G	1.655e^-4	0.839	INTERGENIC
2R	6947606	2R_6947606_SNP [dm3] 2R_11060101_SNP [dm6]	A	G	1.661e^-4	0.84	INTRON luna
2L	8586903	2L_8586903_SNP [dm3] 2L_8586903_SNP [dm6]	C	T	1.678e^-4	0.843	INTRON Sema-1a
3R	12212472	3R_12212472_SNP [dm3] 3R_16386750_SNP [dm6]	A	C	1.681e^-4	0.843	INTRON ss	regulatory region REDfly_CRMs
X	5341999	X_5341999_SNP [dm3] X_5447966_SNP [dm6]	A	C	1.686e^-4	0.843	INTRON SPR
3R	25511113	3R_25511113_SNP [dm3] 3R_29685391_SNP [dm6]	T	C	1.688e^-4	0.843	DOWNSTREAM Obp99c INTRON Gycalpha99B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	7503399	X_7503399_SNP [dm3] X_7609366_SNP [dm6]	T	G	1.700e^-4	0.843	UTR_5_PRIME ct	TF binding site BDTNP1_TFBS_z mE1_TFBS_disco
2R	18954593	2R_18954593_SNP [dm3] 2R_23067070_SNP [dm6]	A	G	1.712e^-4	0.843	UTR_3_PRIME PPO3 UPSTREAM l_2_k09913	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	8586894	2L_8586894_DEL [dm3] 2L_8586894_DEL [dm6]	TC	T	1.712e^-4	0.843	INTRON Sema-1a
2L	4133296	2L_4133296_SNP [dm3] 2L_4133296_SNP [dm6]	A	C	1.717e^-4	0.843	INTERGENIC
2L	13046378	2L_13046378_SNP [dm3] 2L_13046378_SNP [dm6]	A	G	1.717e^-4	0.843	INTRON CG9932
3L	10283028	3L_10283028_SNP [dm3] 3L_10289928_SNP [dm6]	T	G	1.727e^-4	0.843	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6587384	2L_6587384_SNP [dm3] 2L_6587384_SNP [dm6]	G	A	1.733e^-4	0.843	INTRON CG11319
2R	18002840	2R_18002840_SNP [dm3] 2R_22115335_SNP [dm6]	A	C	1.735e^-4	0.843	SYNONYMOUS_CODING CG30281 DOWNSTREAM CG30280 INTRON Vrp1
2R	1715186	2R_1715186_DEL [dm3] 2R_5827681_DEL [dm6]	ACACTCCTATAGT...	A	1.739e^-4	0.843	INTRON dpr12
2R	18210222	2R_18210222_SNP [dm3] 2R_22322717_SNP [dm6]	C	T	1.748e^-4	0.843	UPSTREAM Gp150 INTRON Gp150	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	14661409	X_14661409_SNP [dm3] X_14767376_SNP [dm6]	C	T	1.753e^-4	0.843	INTERGENIC
2L	4236079	2L_4236079_SNP [dm3] 2L_4236079_SNP [dm6]	C	T	1.759e^-4	0.843	INTERGENIC
3L	7389545	3L_7389545_SNP [dm3] 3L_7396445_SNP [dm6]	G	A	1.760e^-4	0.843	UTR_5_PRIME CG32379 DOWNSTREAM CG8563	TF binding site mE1_TFBS_HSA
2R	20021812	2R_20021812_SNP [dm3] 2R_24134289_SNP [dm6]	T	A	1.760e^-4	0.843	UPSTREAM tamo DOWNSTREAM CG4065 INTRON Zfrp8	TF binding site BDTNP1_TFBS_dl
2L	10890934	2L_10890934_SNP [dm3] 2L_10890934_SNP [dm6]	C	A	1.761e^-4	0.843	INTERGENIC
2L	11428386	2L_11428386_SNP [dm3] 2L_11428386_SNP [dm6]	T	C	1.761e^-4	0.843	INTERGENIC
2R	16656136	2R_16656136_SNP [dm3] 2R_20768631_SNP [dm6]	C	T	1.764e^-4	0.843	DOWNSTREAM CR44665 INTERGENIC
2R	18205971	2R_18205971_SNP [dm3] 2R_22318466_SNP [dm6]	C	A	1.766e^-4	0.843	UTR_5_PRIME Gp150 DOWNSTREAM CR44756 INTRON Gp150	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	5583955	X_5583955_SNP [dm3] X_5689922_SNP [dm6]	G	A	1.770e^-4	0.843	UPSTREAM cv & 1 other EXON CR45525	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	6503025	3R_6503025_DEL [dm3] 3R_10677303_DEL [dm6]	TGGCGGACAC	T	1.779e^-4	0.845	UPSTREAM CG6465 DOWNSTREAM CG14688 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	8425260	2L_8425260_SNP [dm3] 2L_8425260_SNP [dm6]	A	C	1.804e^-4	0.847	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	4079086	X_4079086_DEL [dm3] X_4185053_DEL [dm6]	GAAG	G	1.809e^-4	0.847	INTRON Fas2
2R	19202929	2R_19202929_SNP [dm3] 2R_23315406_SNP [dm6]	G	A	1.810e^-4	0.847	INTERGENIC
2R	1589799	2R_1589799_SNP [dm3] 2R_5702294_SNP [dm6]	G	A	1.813e^-4	0.847	SPLICE_SITE_DONOR vlc START_GAINED vlc UTR_5_PRIME vlc UPSTREAM vlc INTRON vlc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	6693714	X_6693714_SNP [dm3] X_6799681_SNP [dm6]	T	A	1.821e^-4	0.847	INTRON C3G
2L	7795815	2L_7795815_SNP [dm3] 2L_7795815_SNP [dm6]	A	T	1.824e^-4	0.847	NON_SYNONYMOUS_CODING LKR UPSTREAM CR44825 DOWNSTREAM Herp
2L	10794501	2L_10794501_DEL [dm3] 2L_10794501_DEL [dm6]	GG	G	1.830e^-4	0.847	INTRON CG31869
2R	18893747	2R_18893747_SNP [dm3] 2R_23006224_SNP [dm6]	C	A	1.830e^-4	0.847	INTRON twi
2R	18046843	2R_18046843_SNP [dm3] 2R_22159338_SNP [dm6]	A	G	1.831e^-4	0.847	INTRON a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	4133305	2L_4133305_SNP [dm3] 2L_4133305_SNP [dm6]	T	G	1.832e^-4	0.847	INTERGENIC
2R	13156683	2R_13156683_SNP [dm3] 2R_17269178_SNP [dm6]	T	C	1.834e^-4	0.847	INTRON mbl	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run
3R	17311026	3R_17311026_SNP [dm3] 3R_21485304_SNP [dm6]	G	A	1.842e^-4	0.849	SYNONYMOUS_CODING CG7922
2L	7867793	2L_7867793_DEL [dm3] 2L_7867793_DEL [dm6]	CTGCAAATAC	C	1.851e^-4	0.849	INTRON Proc
2L	12547385	2L_12547385_SNP [dm3] 2L_12547385_SNP [dm6]	A	C	1.852e^-4	0.849	UPSTREAM bun INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8116753	3L_8116753_SNP [dm3] 3L_8123653_SNP [dm6]	A	T	1.855e^-4	0.849	UTR_3_PRIME CG7550 DOWNSTREAM mRpL36 & 1 other	TF binding site mE1_TFBS_cad
2L	8770452	2L_8770452_SNP [dm3] 2L_8770452_SNP [dm6]	C	T	1.866e^-4	0.85	NON_SYNONYMOUS_CODING CG9465	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10672928	2L_10672928_SNP [dm3] 2L_10672928_SNP [dm6]	G	A	1.867e^-4	0.85	INTERGENIC
2L	11509822	2L_11509822_SNP [dm3] 2L_11509822_SNP [dm6]	T	C	1.873e^-4	0.851	SYNONYMOUS_CODING CG6509 UTR_3_PRIME CG6509
2L	19292685	2L_19292685_SNP [dm3] 2L_19292685_SNP [dm6]	C	T	1.879e^-4	0.851	INTERGENIC
2L	10602025	2L_10602025_SNP [dm3] 2L_10602025_SNP [dm6]	G	T	1.886e^-4	0.851	INTRON Trim9
2R	1872673	2R_1872673_SNP [dm3] 2R_5985168_SNP [dm6]	A	T	1.887e^-4	0.851	INTRON Src42A
X	4778971	X_4778971_SNP [dm3] X_4884938_SNP [dm6]	A	T	1.912e^-4	0.858	INTRON CG42594
2L	15970799	2L_15970799_SNP [dm3] 2L_15970799_SNP [dm6]	A	G	1.921e^-4	0.858	INTERGENIC
2L	4133300	2L_4133300_SNP [dm3] 2L_4133300_SNP [dm6]	G	A	1.922e^-4	0.858	INTERGENIC
3R	17311142	3R_17311142_SNP [dm3] 3R_21485420_SNP [dm6]	T	C	1.928e^-4	0.858	NON_SYNONYMOUS_CODING CG7922
2R	8484996	2R_8484996_SNP [dm3] 2R_12597491_SNP [dm6]	C	A	1.931e^-4	0.858	INTRON Amph
3R	17793901	3R_17793901_SNP [dm3] 3R_21968179_SNP [dm6]	A	G	1.931e^-4	0.858	INTRON Eip93F
3R	25009426	3R_25009426_SNP [dm3] 3R_29183704_SNP [dm6]	A	G	1.940e^-4	0.859	INTRON CG14509
2L	12555283	2L_12555283_SNP [dm3] 2L_12555283_SNP [dm6]	T	C	1.950e^-4	0.859	INTERGENIC
2L	18205511	2L_18205511_INS [dm3] 2L_18205511_INS [dm6]	C	CTCCACA	1.957e^-4	0.859	INTRON CG42750
2R	9309812	2R_9309812_SNP [dm3] 2R_13422307_SNP [dm6]	T	C	1.960e^-4	0.859	DOWNSTREAM CG30060 INTRON CG42321
2L	11979325	2L_11979325_SNP [dm3] 2L_11979325_SNP [dm6]	C	G	1.960e^-4	0.859	INTERGENIC
2R	18954619	2R_18954619_INS [dm3] 2R_23067096_INS [dm6]	T	TATACCAGTCCAATGTCCAA...	1.963e^-4	0.859	UTR_3_PRIME PPO3 UPSTREAM l_2_k09913	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	13046565	2L_13046565_SNP [dm3] 2L_13046565_SNP [dm6]	A	C	1.968e^-4	0.859	INTRON CG9932
2R	1375589	2R_1375589_SNP [dm3] 2R_5488084_SNP [dm6]	C	T	1.976e^-4	0.859	INTRON CG30440	transposable element FlyBase
3R	4953120	3R_4953120_SNP [dm3] 3R_9127398_SNP [dm6]	A	T	1.984e^-4	0.859	INTRON pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	834368	2R_834368_SNP [dm3] 2R_4946863_SNP [dm6]	C	G	1.986e^-4	0.859	INTRON Ir41a	transposable element FlyBase
2R	16682302	2R_16682302_SNP [dm3] 2R_20794797_SNP [dm6]	T	A	1.988e^-4	0.859	INTERGENIC
X	2615604	X_2615604_SNP [dm3] X_2721571_SNP [dm6]	T	A	2.001e^-4	0.859	SYNONYMOUS_CODING fs_1_Yb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
X	15024079	X_15024079_SNP [dm3] X_15130046_SNP [dm6]	G	A	2.009e^-4	0.859	INTRON drd
2L	4133255	2L_4133255_SNP [dm3] 2L_4133255_SNP [dm6]	G	T	2.017e^-4	0.859	INTERGENIC
X	5758727	X_5758727_SNP [dm3] X_5864694_SNP [dm6]	T	C	2.021e^-4	0.859	UTR_3_PRIME CG43137
2L	5286188	2L_5286188_SNP [dm3] 2L_5286188_SNP [dm6]	A	G	2.031e^-4	0.859	INTERGENIC
X	15446594	X_15446594_DEL [dm3] X_15552561_DEL [dm6]	TAGTACGT	T	2.041e^-4	0.859	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	10505662	3R_10505662_DEL [dm3] 3R_14679940_DEL [dm6]	AGTGACTT	A	2.049e^-4	0.859	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	17432590	X_17432590_SNP [dm3] X_17538557_SNP [dm6]	G	C	2.061e^-4	0.859	INTRON CG43658
2L	10897443	2L_10897443_SNP [dm3] 2L_10897443_SNP [dm6]	A	G	2.075e^-4	0.859	INTERGENIC
X	14661374	X_14661374_SNP [dm3] X_14767341_SNP [dm6]	T	A	2.079e^-4	0.859	INTERGENIC
2R	17240261	2R_17240261_SNP [dm3] 2R_21352756_SNP [dm6]	T	C	2.082e^-4	0.859	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2L	14967754	2L_14967754_SNP [dm3] 2L_14967754_SNP [dm6]	T	G	2.089e^-4	0.859	INTRON CG42313
2L	5840164	2L_5840164_SNP [dm3] 2L_5840164_SNP [dm6]	G	A	2.103e^-4	0.859	INTRON TrissinR
3L	13140968	3L_13140968_SNP [dm3] 3L_13147868_SNP [dm6]	G	A	2.104e^-4	0.859	INTERGENIC
2L	15399068	2L_15399068_SNP [dm3] 2L_15399068_SNP [dm6]	G	C	2.106e^-4	0.859	UPSTREAM CR45373 DOWNSTREAM CR44860 INTERGENIC
2L	529575	2L_529575_SNP [dm3] 2L_529575_SNP [dm6]	A	T	2.113e^-4	0.859	INTRON ush	regulatory region REDfly_CRMs
X	14920496	X_14920496_SNP [dm3] X_15026463_SNP [dm6]	G	A	2.116e^-4	0.859	INTRON hiw & 1 other
2L	19306829	2L_19306829_SNP [dm3] 2L_19306829_SNP [dm6]	C	A	2.116e^-4	0.859	INTERGENIC
2L	8423912	2L_8423912_SNP [dm3] 2L_8423912_SNP [dm6]	A	T	2.120e^-4	0.859	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3L	13012109	3L_13012109_SNP [dm3] 3L_13019009_SNP [dm6]	A	G	2.120e^-4	0.859	NON_SYNONYMOUS_CODING ste14 DOWNSTREAM AdenoK EXON CR45445
X	2615401	X_2615401_SNP [dm3] X_2721368_SNP [dm6]	G	A	2.121e^-4	0.859	NON_SYNONYMOUS_CODING fs_1_Yb	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	18463192	2L_18463192_SNP [dm3] 2L_18463192_SNP [dm6]	G	A	2.123e^-4	0.859	INTRON let-7-C
2R	19202944	2R_19202944_SNP [dm3] 2R_23315421_SNP [dm6]	A	G	2.128e^-4	0.859	INTERGENIC
2L	11432177	2L_11432177_SNP [dm3] 2L_11432177_SNP [dm6]	T	A	2.136e^-4	0.859	INTERGENIC
3L	3891015	3L_3891015_DEL [dm3] 3L_3891015_DEL [dm6]	ACATTTTAAGTTAATTGAAA...	A	2.152e^-4	0.859	DOWNSTREAM CR45422 INTERGENIC
3L	1411632	3L_1411632_SNP [dm3] 3L_1411632_SNP [dm6]	G	T	2.156e^-4	0.859	SYNONYMOUS_CODING CG9168 INTRON Ptp61F	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	18916854	2L_18916854_SNP [dm3] 2L_18916854_SNP [dm6]	A	G	2.162e^-4	0.859	UTR_3_PRIME ssp3	TF binding site mE1_TFBS_kn
3L	18698614	3L_18698614_SNP [dm3] 3L_18705514_SNP [dm6]	G	T	2.162e^-4	0.859	INTERGENIC
2L	11433079	2L_11433079_SNP [dm3] 2L_11433079_SNP [dm6]	C	T	2.168e^-4	0.859	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	19373456	X_19373456_INS [dm3] X_19479423_INS [dm6]	G	GGAG	2.169e^-4	0.859	UTR_3_PRIME mRpS14 UPSTREAM Nat1 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	10708299	2L_10708299_SNP [dm3] 2L_10708299_SNP [dm6]	G	T	2.176e^-4	0.859	INTRON Lip2
3L	5757348	3L_5757348_SNP [dm3] 3L_5764248_SNP [dm6]	G	A	2.179e^-4	0.859	UPSTREAM snoRNA:684 & 1 other DOWNSTREAM snoRNA:Psi28S-1837a & 1 other INTRON CG10576 EXON snoRNA:Psi28S-1837b	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	13876354	X_13876354_SNP [dm3] X_13982321_SNP [dm6]	A	G	2.185e^-4	0.859	INTRON mamo
2L	14038834	2L_14038834_SNP [dm3] 2L_14038834_SNP [dm6]	T	C	2.191e^-4	0.859	UPSTREAM CR45284 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	18463260	2L_18463260_SNP [dm3] 2L_18463260_SNP [dm6]	A	T	2.197e^-4	0.859	INTRON let-7-C
3L	12831486	3L_12831486_SNP [dm3] 3L_12838386_SNP [dm6]	C	T	2.198e^-4	0.859	INTRON CG10960
3R	7698499	3R_7698499_DEL [dm3] 3R_11872777_DEL [dm6]	GG	G	2.204e^-4	0.859	INTERGENIC
2L	16354883	2L_16354883_SNP [dm3] 2L_16354883_SNP [dm6]	T	A	2.208e^-4	0.859	DOWNSTREAM CaBP1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3R	14894973	3R_14894973_SNP [dm3] 3R_19069251_SNP [dm6]	C	T	2.210e^-4	0.859	INTRON cdi
2L	19282858	2L_19282858_SNP [dm3] 2L_19282858_SNP [dm6]	T	C	2.210e^-4	0.859	INTERGENIC
2R	7508836	2R_7508836_SNP [dm3] 2R_11621331_SNP [dm6]	C	G	2.220e^-4	0.859	SYNONYMOUS_CODING CG9005	TF binding site mE1_TFBS_chinmo
2L	16359855	2L_16359855_SNP [dm3] 2L_16359855_SNP [dm6]	G	C	2.224e^-4	0.859	INTERGENIC
2L	7943384	2L_7943384_SNP [dm3] 2L_7943384_SNP [dm6]	C	T	2.237e^-4	0.859	INTRON Snoo
X	15446267	X_15446267_INS [dm3] X_15552234_INS [dm6]	A	AAATAAATGAA...	2.238e^-4	0.859	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17240236	2R_17240236_SNP [dm3] 2R_21352731_SNP [dm6]	A	G	2.241e^-4	0.859	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17967249	2R_17967249_DEL [dm3] 2R_22079744_DEL [dm6]	AAACGTT	A	2.241e^-4	0.859	UPSTREAM Synj DOWNSTREAM GlcT-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11431368	2L_11431368_SNP [dm3] 2L_11431368_SNP [dm6]	G	C	2.248e^-4	0.859	INTERGENIC
2R	7610520	2R_7610520_SNP [dm3] 2R_11723015_SNP [dm6]	A	T	2.250e^-4	0.859	INTRON pyr
2R	16737040	2R_16737040_SNP [dm3] 2R_20849535_SNP [dm6]	A	T	2.255e^-4	0.859	DOWNSTREAM CG9993 INTRON CG17999	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14967381	3R_14967381_SNP [dm3] 3R_19141659_SNP [dm6]	T	C	2.257e^-4	0.859	INTRON Ppcs
3R	14967389	3R_14967389_DEL [dm3] 3R_19141667_DEL [dm6]	GG	T	2.257e^-4	0.859	INTRON Ppcs
3R	14967396	3R_14967396_SNP [dm3] 3R_19141674_SNP [dm6]	G	A	2.257e^-4	0.859	INTRON Ppcs
2L	7673707	2L_7673707_SNP [dm3] 2L_7673707_SNP [dm6]	T	C	2.260e^-4	0.859	INTRON Slob & 1 other	TF binding site mE1_TFBS_sens
X	5729888	X_5729888_SNP [dm3] X_5835855_SNP [dm6]	T	G	2.267e^-4	0.859	INTRON CG15765
3R	26747710	3R_26747710_SNP [dm3] 3R_30921988_SNP [dm6]	C	T	2.274e^-4	0.859	INTRON Ptx1 EXON CR44041	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16359933	2L_16359933_SNP [dm3] 2L_16359933_SNP [dm6]	T	A	2.279e^-4	0.859	INTERGENIC
2L	11979285	2L_11979285_SNP [dm3] 2L_11979285_SNP [dm6]	G	A	2.285e^-4	0.859	INTERGENIC
3L	10283245	3L_10283245_SNP [dm3] 3L_10290145_SNP [dm6]	A	C	2.290e^-4	0.859	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	3106152	2R_3106152_SNP [dm3] 2R_7218647_SNP [dm6]	G	T	2.293e^-4	0.859	INTRON pk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16424170	2L_16424170_SNP [dm3] 2L_16424170_SNP [dm6]	T	G	2.297e^-4	0.859	INTRON CG5888	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	12332603	X_12332603_SNP [dm3] X_12438570_SNP [dm6]	G	A	2.301e^-4	0.859	INTRON Pkcdelta
2R	6224869	2R_6224869_SNP [dm3] 2R_10337364_SNP [dm6]	T	A	2.302e^-4	0.859	INTRON CG42732
2L	6335719	2L_6335719_SNP [dm3] 2L_6335719_SNP [dm6]	A	G	2.312e^-4	0.859	SYNONYMOUS_CODING Pez	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7126346	X_7126346_SNP [dm3] X_7232313_SNP [dm6]	T	A	2.315e^-4	0.859	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_chinmo
3L	13739678	3L_13739678_SNP [dm3] 3L_13746578_SNP [dm6]	C	T	2.317e^-4	0.859	INTRON bru-3
2L	19305676	2L_19305676_SNP [dm3] 2L_19305676_SNP [dm6]	C	T	2.318e^-4	0.859	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	14967397	3R_14967397_SNP [dm3] 3R_19141675_SNP [dm6]	G	T	2.321e^-4	0.859	INTRON Ppcs
3R	14967399	3R_14967399_DEL [dm3] 3R_19141677_DEL [dm6]	GAA	T	2.321e^-4	0.859	INTRON Ppcs
3L	7987324	3L_7987324_SNP [dm3] 3L_7994224_SNP [dm6]	C	A	2.322e^-4	0.859	INTRON nmo	TF binding site mE1_TFBS_cad
3L	10281242	3L_10281242_SNP [dm3] 3L_10288142_SNP [dm6]	T	A	2.327e^-4	0.859	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12718840	2L_12718840_SNP [dm3] 2L_12718840_SNP [dm6]	A	C	2.333e^-4	0.859	UPSTREAM MRP INTRON CG5792	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	20555512	3R_20555512_SNP [dm3] 3R_24729790_SNP [dm6]	A	T	2.334e^-4	0.859	INTRON tok
3L	1840903	3L_1840903_SNP [dm3] 3L_1840903_SNP [dm6]	G	A	2.340e^-4	0.859	SYNONYMOUS_CODING Cpr62Bc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8425855	2L_8425855_SNP [dm3] 2L_8425855_SNP [dm6]	T	C	2.340e^-4	0.859	UPSTREAM Akap200 INTRON Akap200	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
3R	13848868	3R_13848868_SNP [dm3] 3R_18023146_SNP [dm6]	C	T	2.344e^-4	0.859	UTR_3_PRIME CG7785 UPSTREAM CG7794
2L	15630813	2L_15630813_SNP [dm3] 2L_15630813_SNP [dm6]	C	T	2.348e^-4	0.859	SYNONYMOUS_CODING CG18480
2R	12004498	2R_12004498_SNP [dm3] 2R_16116993_SNP [dm6]	T	C	2.350e^-4	0.859	UTR_3_PRIME Asph UPSTREAM Jhedup
3R	16785590	3R_16785590_SNP [dm3] 3R_20959868_SNP [dm6]	A	G	2.360e^-4	0.859	INTRON Atpalpha
2R	20237875	2R_20237875_SNP [dm3] 2R_24350352_SNP [dm6]	G	C	2.363e^-4	0.859	DOWNSTREAM CG44812 & 1 other INTRON bs
2L	16357324	2L_16357324_SNP [dm3] 2L_16357324_SNP [dm6]	T	C	2.365e^-4	0.859	UPSTREAM CaBP1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	16741858	2R_16741858_SNP [dm3] 2R_20854353_SNP [dm6]	A	C	2.374e^-4	0.859	INTERGENIC
3L	11724861	3L_11724861_SNP [dm3] 3L_11731761_SNP [dm6]	G	A	2.375e^-4	0.859	SYNONYMOUS_CODING CG32088 UPSTREAM CG32087
2L	8244059	2L_8244059_SNP [dm3] 2L_8244059_SNP [dm6]	T	C	2.379e^-4	0.859	UPSTREAM CG43057 DOWNSTREAM CG8086 & 1 other INTERGENIC
3L	1555860	3L_1555860_SNP [dm3] 3L_1555860_SNP [dm6]	A	G	2.386e^-4	0.859	SYNONYMOUS_CODING CG12099 DOWNSTREAM Cct2	TF binding site mE1_TFBS_cad
3L	10282833	3L_10282833_SNP [dm3] 3L_10289733_SNP [dm6]	C	G	2.391e^-4	0.859	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15131471	3R_15131471_SNP [dm3] 3R_19305749_SNP [dm6]	G	A	2.393e^-4	0.859	SYNONYMOUS_CODING Dl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	17383693	2R_17383693_INS [dm3] 2R_21496188_INS [dm6]	C	CTTCA	2.401e^-4	0.859	UPSTREAM Fkbp14 INTRON Fkbp14
2R	17383696	2R_17383696_SNP [dm3] 2R_21496191_SNP [dm6]	C	T	2.401e^-4	0.859	UPSTREAM Fkbp14 INTRON Fkbp14
2R	4685885	2R_4685885_SNP [dm3] 2R_8798380_SNP [dm6]	C	T	2.405e^-4	0.859	UPSTREAM sns INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	12820358	X_12820358_SNP [dm3] X_12926325_SNP [dm6]	T	A	2.410e^-4	0.859	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	14913187	X_14913187_SNP [dm3] X_15019154_SNP [dm6]	C	T	2.411e^-4	0.859	INTRON hiw	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11384299	2L_11384299_SNP [dm3] 2L_11384299_SNP [dm6]	C	T	2.412e^-4	0.859	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2L	11377079	2L_11377079_SNP [dm3] 2L_11377079_SNP [dm6]	T	G	2.414e^-4	0.859	INTERGENIC	regulatory region REDfly_CRMs
2R	7790384	2R_7790384_DEL [dm3] 2R_11902879_DEL [dm6]	TT	T	2.419e^-4	0.859	INTRON MCPH1
X	15087879	X_15087879_SNP [dm3] X_15193846_SNP [dm6]	T	A	2.423e^-4	0.859	INTERGENIC
3L	10823255	3L_10823255_SNP [dm3] 3L_10830155_SNP [dm6]	A	T	2.425e^-4	0.859	INTERGENIC
3L	10283023	3L_10283023_SNP [dm3] 3L_10289923_SNP [dm6]	A	T	2.432e^-4	0.859	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	9005834	X_9005834_SNP [dm3] X_9111801_SNP [dm6]	G	C	2.438e^-4	0.859	INTRON AP-1gamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	13046594	2L_13046594_SNP [dm3] 2L_13046594_SNP [dm6]	G	T	2.441e^-4	0.859	INTRON CG9932
2L	19305203	2L_19305203_SNP [dm3] 2L_19305203_SNP [dm6]	A	T	2.442e^-4	0.859	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6223801	3L_6223801_SNP [dm3] 3L_6230701_SNP [dm6]	C	T	2.449e^-4	0.859	INTERGENIC
3L	6837619	3L_6837619_INS [dm3] 3L_6844519_INS [dm6]	T	TT	2.449e^-4	0.859	INTERGENIC
2L	6928891	2L_6928891_SNP [dm3] 2L_6928891_SNP [dm6]	A	C	2.474e^-4	0.865	UTR_3_PRIME Hrb27C DOWNSTREAM Hrb27C
X	13127922	X_13127922_SNP [dm3] X_13233889_SNP [dm6]	T	A	2.482e^-4	0.865	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	11709597	2L_11709597_SNP [dm3] 2L_11709597_SNP [dm6]	C	T	2.489e^-4	0.865	INTERGENIC
3R	13632222	3R_13632222_SNP [dm3] 3R_17806500_SNP [dm6]	G	T	2.491e^-4	0.865	NON_SYNONYMOUS_CODING CG17801 DOWNSTREAM CG7357
2R	7508746	2R_7508746_SNP [dm3] 2R_11621241_SNP [dm6]	A	G	2.492e^-4	0.865	SYNONYMOUS_CODING CG9005	TF binding site mE1_TFBS_chinmo
2L	12717107	2L_12717107_SNP [dm3] 2L_12717107_SNP [dm6]	A	T	2.510e^-4	0.865	NON_SYNONYMOUS_CODING CG5792 INTRON CG5792	TF binding site mE1_TFBS_sens
2R	846116	2R_846116_SNP [dm3] 2R_4958611_SNP [dm6]	C	T	2.523e^-4	0.865	INTRON Ir41a	transposable element FlyBase
3R	11713338	3R_11713338_SNP [dm3] 3R_15887616_SNP [dm6]	A	C	2.524e^-4	0.865	INTERGENIC
2R	19202954	2R_19202954_SNP [dm3] 2R_23315431_SNP [dm6]	G	T	2.524e^-4	0.865	INTERGENIC
2L	16368567	2L_16368567_SNP [dm3] 2L_16368567_SNP [dm6]	A	G	2.524e^-4	0.865	INTERGENIC
3L	13311703	3L_13311703_SNP [dm3] 3L_13318603_SNP [dm6]	T	C	2.531e^-4	0.865	INTERGENIC
2R	19202960	2R_19202960_SNP [dm3] 2R_23315437_SNP [dm6]	C	T	2.536e^-4	0.865	INTERGENIC
X	14913493	X_14913493_SNP [dm3] X_15019460_SNP [dm6]	T	C	2.539e^-4	0.865	INTRON hiw	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7324956	3L_7324956_SNP [dm3] 3L_7331856_SNP [dm6]	C	A	2.539e^-4	0.865	SYNONYMOUS_CODING mus312 UTR_3_PRIME mus312 & 1 other	TF binding site mE1_TFBS_sens
3R	10995243	3R_10995243_SNP [dm3] 3R_15169521_SNP [dm6]	G	A	2.543e^-4	0.865	INTRON Gyc88E
3L	10283033	3L_10283033_INS [dm3] 3L_10289933_INS [dm6]	T	TCATTTT	2.545e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	16756964	X_16756964_SNP [dm3] X_16862931_SNP [dm6]	A	C	2.551e^-4	0.865	INTRON CG13003
3R	21490053	3R_21490053_SNP [dm3] 3R_25664331_SNP [dm6]	C	T	2.554e^-4	0.865	SYNONYMOUS_CODING RASSF8
3L	14491868	3L_14491868_SNP [dm3] 3L_14498768_SNP [dm6]	G	A	2.560e^-4	0.865	INTRON bbg	TF binding site mE1_TFBS_inv
3L	8714435	3L_8714435_SNP [dm3] 3L_8721335_SNP [dm6]	G	A	2.566e^-4	0.865	UTR_5_PRIME CG6511 UPSTREAM CG6511 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8305273	2R_8305273_SNP [dm3] 2R_12417768_SNP [dm6]	A	T	2.566e^-4	0.865	NON_SYNONYMOUS_CODING CG13157	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18205036	2R_18205036_SNP [dm3] 2R_22317531_SNP [dm6]	T	A	2.570e^-4	0.865	UPSTREAM Gp150 DOWNSTREAM CR44758 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	18463243	2L_18463243_SNP [dm3] 2L_18463243_SNP [dm6]	A	C	2.577e^-4	0.866	INTRON let-7-C
2R	8417633	2R_8417633_SNP [dm3] 2R_12530128_SNP [dm6]	G	T	2.587e^-4	0.868	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10242465	3L_10242465_SNP [dm3] 3L_10249365_SNP [dm6]	C	G	2.606e^-4	0.87	UPSTREAM CR44540 INTERGENIC
2L	13590969	2L_13590969_SNP [dm3] 2L_13590969_SNP [dm6]	A	C	2.612e^-4	0.87	INTRON kuz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	18213303	2L_18213303_DEL [dm3] 2L_18213303_DEL [dm6]	AGCAAG	A	2.616e^-4	0.87	INTRON CG42750
2R	18893755	2R_18893755_SNP [dm3] 2R_23006232_SNP [dm6]	C	T	2.617e^-4	0.87	INTRON twi
2R	1216328	2R_1216328_INS [dm3] 2R_5328823_INS [dm6]	G	GTTGTGCAGTAGG...	2.622e^-4	0.87	INTRON sxc
2R	18204971	2R_18204971_INS [dm3] 2R_22317466_INS [dm6]	T	TAT	2.627e^-4	0.87	UPSTREAM Gp150 DOWNSTREAM CR44758 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	14087651	3L_14087651_SNP [dm3] 3L_14094551_SNP [dm6]	G	C	2.632e^-4	0.87	DOWNSTREAM Fbp1 INTERGENIC
2L	7088807	2L_7088807_SNP [dm3] 2L_7088807_SNP [dm6]	G	T	2.634e^-4	0.87	INTERGENIC
2L	11428393	2L_11428393_SNP [dm3] 2L_11428393_SNP [dm6]	G	C	2.642e^-4	0.87	INTERGENIC
2L	16008402	2L_16008402_INS [dm3] 2L_16008402_INS [dm6]	C	CCC	2.642e^-4	0.87	INTRON beat-Ic	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	19266617	2L_19266617_SNP [dm3] 2L_19266617_SNP [dm6]	T	G	2.644e^-4	0.87	INTERGENIC
3L	14147587	3L_14147587_SNP [dm3] 3L_14154487_SNP [dm6]	T	C	2.663e^-4	0.871	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16636684	2L_16636684_SNP [dm3] 2L_16636684_SNP [dm6]	C	T	2.669e^-4	0.871	INTRON CG42389
X	14913900	X_14913900_DEL [dm3] X_15019867_DEL [dm6]	TTTCTTGTAGGTAAT...	T	2.678e^-4	0.871	INTRON hiw	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7800841	2R_7800841_SNP [dm3] 2R_11913336_SNP [dm6]	T	C	2.707e^-4	0.871	UPSTREAM CG13183 INTERGENIC
2L	5930747	2L_5930747_SNP [dm3] 2L_5930747_SNP [dm6]	A	G	2.709e^-4	0.871	INTRON dsf
2L	10659010	2L_10659010_SNP [dm3] 2L_10659010_SNP [dm6]	A	G	2.710e^-4	0.871	DOWNSTREAM CR45692 & 1 other INTERGENIC
2L	8624247	2L_8624247_SNP [dm3] 2L_8624247_SNP [dm6]	T	A	2.710e^-4	0.871	INTRON Sema-1a	TF binding site mE1_TFBS_inv
3R	21455995	3R_21455995_SNP [dm3] 3R_25630273_SNP [dm6]	G	A	2.712e^-4	0.871	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	12416938	2L_12416938_SNP [dm3] 2L_12416938_SNP [dm6]	G	A	2.716e^-4	0.871	INTRON vir-1
2L	16361114	2L_16361114_SNP [dm3] 2L_16361114_SNP [dm6]	T	C	2.717e^-4	0.871	INTERGENIC
3R	24088661	3R_24088661_SNP [dm3] 3R_28262939_SNP [dm6]	G	C	2.719e^-4	0.871	SYNONYMOUS_CODING CG43125 DOWNSTREAM CG43124
2L	11383461	2L_11383461_SNP [dm3] 2L_11383461_SNP [dm6]	G	A	2.725e^-4	0.871	INTERGENIC	regulatory region REDfly_CRMs
2L	17073148	2L_17073148_SNP [dm3] 2L_17073148_SNP [dm6]	G	T	2.725e^-4	0.871	INTERGENIC
X	19055564	X_19055564_SNP [dm3] X_19161531_SNP [dm6]	T	C	2.733e^-4	0.871	INTRON RhoGAP18B	TF binding site mE1_TFBS_inv
3L	10282938	3L_10282938_MNP [dm3] 3L_10289838_MNP [dm6]	TAT	ACA	2.735e^-4	0.871	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7599800	3L_7599800_SNP [dm3] 3L_7606700_SNP [dm6]	A	G	2.737e^-4	0.871	INTRON CG33275
2R	12341792	2R_12341792_SNP [dm3] 2R_16454287_SNP [dm6]	C	T	2.745e^-4	0.871	INTERGENIC
3L	10113971	3L_10113971_SNP [dm3] 3L_10120871_SNP [dm6]	A	G	2.746e^-4	0.871	INTRON dpr6
2R	16111858	2R_16111858_SNP [dm3] 2R_20224353_SNP [dm6]	C	G	2.748e^-4	0.871	INTERGENIC
3R	13848838	3R_13848838_SNP [dm3] 3R_18023116_SNP [dm6]	T	G	2.759e^-4	0.871	UTR_3_PRIME CG7785 UPSTREAM CG7794
2L	16357131	2L_16357131_SNP [dm3] 2L_16357131_SNP [dm6]	T	A	2.761e^-4	0.871	UPSTREAM CaBP1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	11700839	2L_11700839_DEL [dm3] 2L_11700839_DEL [dm6]	GTGA	G	2.763e^-4	0.871	INTERGENIC
X	3873270	X_3873270_SNP [dm3] X_3979237_SNP [dm6]	T	C	2.768e^-4	0.871	INTERGENIC
2L	13046566	2L_13046566_SNP [dm3] 2L_13046566_SNP [dm6]	A	T	2.769e^-4	0.871	INTRON CG9932
X	14913274	X_14913274_SNP [dm3] X_15019241_SNP [dm6]	T	A	2.770e^-4	0.871	INTRON hiw	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21704393	2L_21704393_SNP [dm3] 2L_21704393_SNP [dm6]	A	G	2.774e^-4	0.871	INTRON CG31619
X	15023469	X_15023469_SNP [dm3] X_15129436_SNP [dm6]	G	C	2.776e^-4	0.871	INTRON drd
2L	14360945	2L_14360945_SNP [dm3] 2L_14360945_SNP [dm6]	A	G	2.784e^-4	0.871	SYNONYMOUS_CODING Pgant35A EXON CR43463	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13632216	3R_13632216_SNP [dm3] 3R_17806494_SNP [dm6]	G	A	2.785e^-4	0.871	SYNONYMOUS_CODING CG17801 DOWNSTREAM CG7357
2L	9447741	2L_9447741_SNP [dm3] 2L_9447741_SNP [dm6]	G	A	2.786e^-4	0.871	INTRON numb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
X	14703620	X_14703620_SNP [dm3] X_14809587_SNP [dm6]	C	A	2.798e^-4	0.872	INTRON rut
3R	6554016	3R_6554016_SNP [dm3] 3R_10728294_SNP [dm6]	C	G	2.799e^-4	0.872	INTERGENIC
3L	12497205	3L_12497205_DEL [dm3] 3L_12504105_DEL [dm6]	TTAT	T	2.812e^-4	0.872	UPSTREAM vih & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	7839202	2L_7839202_SNP [dm3] 2L_7839202_SNP [dm6]	T	C	2.812e^-4	0.872	DOWNSTREAM CR43100 INTERGENIC
3R	25459304	3R_25459304_SNP [dm3] 3R_29633582_SNP [dm6]	A	T	2.813e^-4	0.872	INTRON Dop1R2
3L	6753325	3L_6753325_SNP [dm3] 3L_6760225_SNP [dm6]	G	A	2.834e^-4	0.872	SYNONYMOUS_CODING CG32392 INTRON CG32392	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3683295	2R_3683295_SNP [dm3] 2R_7795790_SNP [dm6]	T	C	2.841e^-4	0.872	SYNONYMOUS_CODING mus205
2R	16174289	2R_16174289_SNP [dm3] 2R_20286784_SNP [dm6]	A	G	2.841e^-4	0.872	UTR_5_PRIME CG16868 UPSTREAM CG34199	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	14907958	X_14907958_SNP [dm3] X_15013925_SNP [dm6]	T	C	2.849e^-4	0.872	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
2R	16174144	2R_16174144_SNP [dm3] 2R_20286639_SNP [dm6]	A	G	2.866e^-4	0.872	SYNONYMOUS_CODING CG16868 UPSTREAM CG34199	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25865984	3R_25865984_SNP [dm3] 3R_30040262_SNP [dm6]	G	A	2.888e^-4	0.872	NON_SYNONYMOUS_CODING Sry-beta UPSTREAM janA & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
X	17519128	X_17519128_SNP [dm3] X_17625095_SNP [dm6]	C	T	2.889e^-4	0.872	UTR_3_PRIME stas INTRON stas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	11465181	3L_11465181_DEL [dm3] 3L_11472081_DEL [dm6]	GCAGTT	G	2.894e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
2R	16735454	2R_16735454_SNP [dm3] 2R_20847949_SNP [dm6]	A	T	2.898e^-4	0.872	DOWNSTREAM CG17999 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	16758987	X_16758987_SNP [dm3] X_16864954_SNP [dm6]	G	A	2.906e^-4	0.872	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
3R	15369049	3R_15369049_SNP [dm3] 3R_19543327_SNP [dm6]	G	A	2.906e^-4	0.872	INTRON Dys
X	15089122	X_15089122_SNP [dm3] X_15195089_SNP [dm6]	G	T	2.908e^-4	0.872	INTERGENIC
X	15089568	X_15089568_SNP [dm3] X_15195535_SNP [dm6]	A	C	2.908e^-4	0.872	INTERGENIC
2L	18463249	2L_18463249_SNP [dm3] 2L_18463249_SNP [dm6]	T	A	2.908e^-4	0.872	INTRON let-7-C
2R	9164307	2R_9164307_SNP [dm3] 2R_13276802_SNP [dm6]	A	T	2.916e^-4	0.872	INTRON Dh31-R
2L	6941937	2L_6941937_SNP [dm3] 2L_6941937_SNP [dm6]	G	A	2.923e^-4	0.872	INTRON CG18304	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	7653697	2L_7653697_SNP [dm3] 2L_7653697_SNP [dm6]	C	T	2.924e^-4	0.872	INTRON Slob
X	15084696	X_15084696_SNP [dm3] X_15190663_SNP [dm6]	T	G	2.931e^-4	0.872	DOWNSTREAM CG43737 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10714070	2L_10714070_SNP [dm3] 2L_10714070_SNP [dm6]	A	G	2.933e^-4	0.872	INTERGENIC
2L	13046568	2L_13046568_SNP [dm3] 2L_13046568_SNP [dm6]	A	T	2.937e^-4	0.872	INTRON CG9932
X	19520847	X_19520847_INS [dm3] X_19626814_INS [dm6]	C	CACTTCC	2.939e^-4	0.872	UTR_3_PRIME e_y_3 DOWNSTREAM CG14212
3R	6961613	3R_6961613_SNP [dm3] 3R_11135891_SNP [dm6]	T	C	2.940e^-4	0.872	INTERGENIC
3L	7389686	3L_7389686_SNP [dm3] 3L_7396586_SNP [dm6]	C	T	2.949e^-4	0.872	SYNONYMOUS_CODING CG32379 DOWNSTREAM CG8563	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12287305	2L_12287305_SNP [dm3] 2L_12287305_SNP [dm6]	T	C	2.950e^-4	0.872	UTR_5_PRIME aret INTRON aret
3L	11804868	3L_11804868_SNP [dm3] 3L_11811768_SNP [dm6]	G	A	2.952e^-4	0.872	SYNONYMOUS_CODING CG42255	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13848844	3R_13848844_SNP [dm3] 3R_18023122_SNP [dm6]	A	T	2.960e^-4	0.872	UTR_3_PRIME CG7785 UPSTREAM CG7794
2L	7949941	2L_7949941_DEL [dm3] 2L_7949941_DEL [dm6]	TGATACTTCTT...	T	2.969e^-4	0.872	INTRON Snoo
3L	12497619	3L_12497619_SNP [dm3] 3L_12504519_SNP [dm6]	T	C	2.972e^-4	0.872	UTR_5_PRIME vih UPSTREAM CG10646 DOWNSTREAM CG10654	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	5890069	2L_5890069_SNP [dm3] 2L_5890069_SNP [dm6]	G	T	2.995e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14514881	X_14514881_SNP [dm3] X_14620848_SNP [dm6]	A	G	2.999e^-4	0.872	SYNONYMOUS_CODING NetA
3L	9552228	3L_9552228_SNP [dm3] 3L_9559128_SNP [dm6]	A	G	3.000e^-4	0.872	INTRON CG42673
X	15087811	X_15087811_SNP [dm3] X_15193778_SNP [dm6]	A	T	3.010e^-4	0.872	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10505693	3R_10505693_SNP [dm3] 3R_14679971_SNP [dm6]	A	G	3.011e^-4	0.872	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	7943017	2L_7943017_SNP [dm3] 2L_7943017_SNP [dm6]	G	C	3.018e^-4	0.872	INTRON Snoo
3R	15132603	3R_15132603_SNP [dm3] 3R_19306881_SNP [dm6]	C	T	3.025e^-4	0.872	INTRON Dl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	11356443	2L_11356443_SNP [dm3] 2L_11356443_SNP [dm6]	T	G	3.028e^-4	0.872	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	16796317	3R_16796317_SNP [dm3] 3R_20970595_SNP [dm6]	C	T	3.033e^-4	0.872	INTRON Atpalpha
2L	6749564	2L_6749564_INS [dm3] 2L_6749564_INS [dm6]	T	TA	3.035e^-4	0.872	INTRON CG11221
2R	14572427	2R_14572427_SNP [dm3] 2R_18684922_SNP [dm6]	G	C	3.036e^-4	0.872	SYNONYMOUS_CODING CG44433 UPSTREAM CG44434 & 1 other	TF binding site mE1_TFBS_sens
2R	13569397	2R_13569397_SNP [dm3] 2R_17681892_SNP [dm6]	G	T	3.038e^-4	0.872	INTRON Sema-1b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad
X	15496926	X_15496926_SNP [dm3] X_15602893_SNP [dm6]	G	A	3.040e^-4	0.872	DOWNSTREAM sog INTERGENIC
2L	18450924	2L_18450924_SNP [dm3] 2L_18450924_SNP [dm6]	A	C	3.041e^-4	0.872	NON_SYNONYMOUS_CODING bsf	TF binding site mE1_TFBS_cad
2L	7283617	2L_7283617_SNP [dm3] 2L_7283617_SNP [dm6]	A	C	3.042e^-4	0.872	INTERGENIC
X	735133	X_735133_DEL [dm3] X_841100_DEL [dm6]	GTG	G	3.044e^-4	0.872	UPSTREAM CG43867 INTRON CG43867	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13115682	2L_13115682_SNP [dm3] 2L_13115682_SNP [dm6]	A	G	3.057e^-4	0.872	INTERGENIC
2L	10698388	2L_10698388_MNP [dm3] 2L_10698388_MNP [dm6]	GGTGCT	TAAATA	3.059e^-4	0.872	UPSTREAM CG7300 DOWNSTREAM CR44181 INTERGENIC	TF binding site mE1_TFBS_ftz_f1
2L	18443591	2L_18443591_DEL [dm3] 2L_18443591_DEL [dm6]	AAA	A	3.063e^-4	0.872	UPSTREAM RpS26 DOWNSTREAM ncm INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	19266608	2L_19266608_SNP [dm3] 2L_19266608_SNP [dm6]	T	A	3.064e^-4	0.872	INTERGENIC
2L	19570537	2L_19570537_SNP [dm3] 2L_19570537_SNP [dm6]	T	G	3.068e^-4	0.872	UPSTREAM mir-2a-2 & 2 others INTRON spi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	11640009	2L_11640009_SNP [dm3] 2L_11640009_SNP [dm6]	T	C	3.070e^-4	0.872	INTERGENIC
2L	5013081	2L_5013081_SNP [dm3] 2L_5013081_SNP [dm6]	A	C	3.079e^-4	0.872	NON_SYNONYMOUS_CODING vkg DOWNSTREAM CG3887	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14391477	3R_14391477_SNP [dm3] 3R_18565755_SNP [dm6]	T	C	3.081e^-4	0.872	UPSTREAM CG43210 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12175796	2L_12175796_SNP [dm3] 2L_12175796_SNP [dm6]	A	C	3.083e^-4	0.872	INTRON aret & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7697369	2L_7697369_SNP [dm3] 2L_7697369_SNP [dm6]	G	A	3.083e^-4	0.872	INTRON Tep2
2L	12547358	2L_12547358_SNP [dm3] 2L_12547358_SNP [dm6]	C	A	3.099e^-4	0.872	UPSTREAM bun INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26141965	3R_26141965_SNP [dm3] 3R_30316243_SNP [dm6]	T	A	3.101e^-4	0.872	INTRON hdc
X	16525779	X_16525779_SNP [dm3] X_16631746_SNP [dm6]	A	G	3.103e^-4	0.872	UPSTREAM CR45001 INTRON Rok & 1 other	TF binding site mE1_TFBS_inv
3L	10599601	3L_10599601_SNP [dm3] 3L_10606501_SNP [dm6]	C	G	3.104e^-4	0.872	INTERGENIC
3R	9830918	3R_9830918_SNP [dm3] 3R_14005196_SNP [dm6]	G	A	3.107e^-4	0.872	INTRON rdx
2R	9637985	2R_9637985_SNP [dm3] 2R_13750480_SNP [dm6]	T	A	3.108e^-4	0.872	INTERGENIC
2L	3441803	2L_3441803_SNP [dm3] 2L_3441803_SNP [dm6]	G	A	3.111e^-4	0.872	INTERGENIC
3R	21619144	3R_21619144_SNP [dm3] 3R_25793422_SNP [dm6]	A	G	3.114e^-4	0.872	UPSTREAM CR43632 DOWNSTREAM CR43633 INTERGENIC
2R	20184166	2R_20184166_SNP [dm3] 2R_24296643_SNP [dm6]	T	C	3.117e^-4	0.872	SYNONYMOUS_CODING CG3394	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11170605	2R_11170605_DEL [dm3] 2R_15283100_DEL [dm6]	TTATAA	GGGC	3.118e^-4	0.872	INTRON Trpm
2R	19706887	2R_19706887_SNP [dm3] 2R_23819364_SNP [dm6]	C	T	3.120e^-4	0.872	UPSTREAM CG5549 INTERGENIC
2L	10897270	2L_10897270_SNP [dm3] 2L_10897270_SNP [dm6]	T	G	3.129e^-4	0.872	INTERGENIC
2L	11508765	2L_11508765_SNP [dm3] 2L_11508765_SNP [dm6]	A	C	3.129e^-4	0.872	UTR_3_PRIME CG6509 DOWNSTREAM CG6509 & 1 other
3L	18441958	3L_18441958_SNP [dm3] 3L_18448858_SNP [dm6]	A	T	3.133e^-4	0.872	INTERGENIC
2R	18954601	2R_18954601_SNP [dm3] 2R_23067078_SNP [dm6]	C	T	3.134e^-4	0.872	UTR_3_PRIME PPO3 UPSTREAM l_2_k09913	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	9275384	3R_9275384_SNP [dm3] 3R_13449662_SNP [dm6]	T	C	3.137e^-4	0.872	UPSTREAM CG14372 INTERGENIC
3L	16906276	3L_16906276_SNP [dm3] 3L_16913176_SNP [dm6]	G	A	3.149e^-4	0.872	INTRON Lmpt
X	13260741	X_13260741_SNP [dm3] X_13366708_SNP [dm6]	G	A	3.151e^-4	0.872	UTR_3_PRIME Syt12
3L	773132	3L_773132_SNP [dm3] 3L_773132_SNP [dm6]	C	A	3.151e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11432125	2L_11432125_SNP [dm3] 2L_11432125_SNP [dm6]	G	C	3.163e^-4	0.874	INTERGENIC
2L	5480938	2L_5480938_SNP [dm3] 2L_5480938_SNP [dm6]	A	T	3.170e^-4	0.874	INTERGENIC	TF binding site mE1_TFBS_cad
3L	3027466	3L_3027466_SNP [dm3] 3L_3027466_SNP [dm6]	C	G	3.174e^-4	0.874	UPSTREAM aly INTERGENIC
3R	17790767	3R_17790767_SNP [dm3] 3R_21965045_SNP [dm6]	T	C	3.198e^-4	0.878	INTRON Eip93F
2R	18200827	2R_18200827_SNP [dm3] 2R_22313322_SNP [dm6]	T	A	3.199e^-4	0.878	INTRON CR44758
2L	3236598	2L_3236598_SNP [dm3] 2L_3236598_SNP [dm6]	C	A	3.200e^-4	0.878	INTERGENIC
2R	3618313	2R_3618313_SNP [dm3] 2R_7730808_SNP [dm6]	G	A	3.207e^-4	0.878	INTRON CG18812
2R	7324355	2R_7324355_SNP [dm3] 2R_11436850_SNP [dm6]	G	A	3.211e^-4	0.878	INTRON CG7777
2L	4132154	2L_4132154_SNP [dm3] 2L_4132154_SNP [dm6]	G	A	3.216e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	17986526	2R_17986526_SNP [dm3] 2R_22099021_SNP [dm6]	G	A	3.223e^-4	0.878	SYNONYMOUS_CODING CG11073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8714546	3L_8714546_SNP [dm3] 3L_8721446_SNP [dm6]	T	G	3.224e^-4	0.878	UTR_5_PRIME CG6511 UPSTREAM CG6511 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	18146927	2R_18146927_SNP [dm3] 2R_22259422_SNP [dm6]	T	C	3.229e^-4	0.878	INTRON dve	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	16682336	2R_16682336_SNP [dm3] 2R_20794831_SNP [dm6]	G	T	3.244e^-4	0.878	INTERGENIC
2R	20021457	2R_20021457_SNP [dm3] 2R_24133934_SNP [dm6]	A	C	3.252e^-4	0.878	UPSTREAM Zfrp8 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	2517361	2L_2517361_SNP [dm3] 2L_2517361_SNP [dm6]	C	T	3.253e^-4	0.878	SYNONYMOUS_CODING CG3528
2L	13922476	2L_13922476_SNP [dm3] 2L_13922476_SNP [dm6]	C	T	3.255e^-4	0.878	INTRON Ance-3 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	12112000	2L_12112000_SNP [dm3] 2L_12112000_SNP [dm6]	T	G	3.257e^-4	0.878	UTR_3_PRIME Phae2 DOWNSTREAM Phae2	TF binding site mE1_TFBS_cad
X	17678503	X_17678503_SNP [dm3] X_17784470_SNP [dm6]	A	T	3.259e^-4	0.878	INTERGENIC
2L	7697363	2L_7697363_DEL [dm3] 2L_7697363_DEL [dm6]	TGGG	T	3.270e^-4	0.879	INTRON Tep2
2L	11383477	2L_11383477_SNP [dm3] 2L_11383477_SNP [dm6]	A	C	3.272e^-4	0.879	INTERGENIC	regulatory region REDfly_CRMs
2R	14222099	2R_14222099_SNP [dm3] 2R_18334594_SNP [dm6]	C	G	3.293e^-4	0.882	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	9005828	X_9005828_DEL [dm3] X_9111795_DEL [dm6]	TA	T	3.302e^-4	0.882	INTRON AP-1gamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	20761965	3R_20761965_SNP [dm3] 3R_24936243_SNP [dm6]	A	G	3.306e^-4	0.882	INTRON Osbp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	12544700	2L_12544700_INS [dm3] 2L_12544700_INS [dm6]	A	ACATA	3.318e^-4	0.882	DOWNSTREAM CR42746 INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5404517	3L_5404517_SNP [dm3] 3L_5411417_SNP [dm6]	A	T	3.321e^-4	0.882	INTERGENIC
X	3873456	X_3873456_SNP [dm3] X_3979423_SNP [dm6]	T	G	3.324e^-4	0.882	INTERGENIC
3L	12601271	3L_12601271_SNP [dm3] 3L_12608171_SNP [dm6]	T	A	3.325e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7120967	2R_7120967_SNP [dm3] 2R_11233462_SNP [dm6]	T	G	3.327e^-4	0.882	SYNONYMOUS_CODING CG13218 UPSTREAM metro & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_Trl
X	1420586	X_1420586_SNP [dm3] X_1526553_SNP [dm6]	T	G	3.333e^-4	0.882	INTRON Mur2B
3R	9874633	3R_9874633_SNP [dm3] 3R_14048911_SNP [dm6]	C	A	3.336e^-4	0.882	INTERGENIC
2R	9411200	2R_9411200_SNP [dm3] 2R_13523695_SNP [dm6]	A	T	3.340e^-4	0.882	DOWNSTREAM CG13331 INTRON Vmat
2R	6588044	2R_6588044_SNP [dm3] 2R_10700539_SNP [dm6]	C	T	3.347e^-4	0.882	INTRON stan
X	6562445	X_6562445_SNP [dm3] X_6668412_SNP [dm6]	C	T	3.348e^-4	0.882	DOWNSTREAM CG3198 & 1 other INTERGENIC
2L	11383511	2L_11383511_SNP [dm3] 2L_11383511_SNP [dm6]	A	G	3.353e^-4	0.882	INTERGENIC	regulatory region REDfly_CRMs
2R	9499253	2R_9499253_INS [dm3] 2R_13611748_INS [dm6]	A	AA	3.358e^-4	0.882	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	5323801	X_5323801_SNP [dm3] X_5429768_SNP [dm6]	C	T	3.366e^-4	0.882	UTR_5_PRIME CG15784 UPSTREAM CG15784 DOWNSTREAM CR45517
3L	666835	3L_666835_SNP [dm3] 3L_666835_SNP [dm6]	A	G	3.375e^-4	0.882	INTERGENIC
3L	11366428	3L_11366428_SNP [dm3] 3L_11373328_SNP [dm6]	T	C	3.377e^-4	0.882	INTERGENIC
2R	15557795	2R_15557795_SNP [dm3] 2R_19670290_SNP [dm6]	C	G	3.377e^-4	0.882	UPSTREAM isopeptidase-T-3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	16176742	3R_16176742_SNP [dm3] 3R_20351020_SNP [dm6]	C	A	3.388e^-4	0.882	INTERGENIC
2R	19661425	2R_19661425_DEL [dm3] 2R_23773902_DEL [dm6]	ATA	A	3.389e^-4	0.882	INTRON CG9850
3L	12499225	3L_12499225_SNP [dm3] 3L_12506125_SNP [dm6]	C	T	3.391e^-4	0.882	SYNONYMOUS_CODING CG10654 DOWNSTREAM vih	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10897681	2L_10897681_SNP [dm3] 2L_10897681_SNP [dm6]	G	C	3.394e^-4	0.882	INTERGENIC
3L	12465793	3L_12465793_SNP [dm3] 3L_12472693_SNP [dm6]	T	C	3.396e^-4	0.882	INTRON CG10616
3L	1513949	3L_1513949_SNP [dm3] 3L_1513949_SNP [dm6]	T	C	3.406e^-4	0.882	INTRON Psa & 1 other	TF binding site BDTNP1_TFBS_da
2L	13580295	2L_13580295_SNP [dm3] 2L_13580295_SNP [dm6]	C	A	3.407e^-4	0.882	INTRON kuz
2R	17967680	2R_17967680_SNP [dm3] 2R_22080175_SNP [dm6]	C	T	3.410e^-4	0.882	UPSTREAM Synj DOWNSTREAM GlcT-1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	8246892	2L_8246892_SNP [dm3] 2L_8246892_SNP [dm6]	C	T	3.425e^-4	0.882	SYNONYMOUS_CODING CG8086 INTRON CG8086
2L	18145367	2L_18145367_SNP [dm3] 2L_18145367_SNP [dm6]	A	G	3.431e^-4	0.882	INTRON Socs36E EXON CR44478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	13974690	2L_13974690_SNP [dm3] 2L_13974690_SNP [dm6]	G	T	3.431e^-4	0.882	NON_SYNONYMOUS_CODING NimC1
2L	8855630	2L_8855630_SNP [dm3] 2L_8855630_SNP [dm6]	C	T	3.431e^-4	0.882	INTERGENIC
2L	5889903	2L_5889903_SNP [dm3] 2L_5889903_SNP [dm6]	A	T	3.437e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
2L	8425847	2L_8425847_SNP [dm3] 2L_8425847_SNP [dm6]	A	G	3.438e^-4	0.882	UPSTREAM Akap200 INTRON Akap200	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
X	6015985	X_6015985_SNP [dm3] X_6121952_SNP [dm6]	G	A	3.442e^-4	0.882	INTRON Ca-alpha1T	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17383691	2R_17383691_SNP [dm3] 2R_21496186_SNP [dm6]	T	C	3.446e^-4	0.882	UPSTREAM Fkbp14 INTRON Fkbp14
2L	13046561	2L_13046561_INS [dm3] 2L_13046561_INS [dm6]	A	AA	3.451e^-4	0.882	INTRON CG9932
X	5821020	X_5821020_DEL [dm3] X_5926987_DEL [dm6]	TT	T	3.455e^-4	0.882	INTRON CG3726
3L	10618147	3L_10618147_SNP [dm3] 3L_10625047_SNP [dm6]	G	A	3.464e^-4	0.883	SYNONYMOUS_CODING CG43127 UTR_3_PRIME CG43127
3L	16736475	3L_16736475_SNP [dm3] 3L_16743375_SNP [dm6]	G	A	3.471e^-4	0.883	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	19400395	2R_19400395_SNP [dm3] 2R_23512872_SNP [dm6]	C	G	3.475e^-4	0.883	UPSTREAM CG3906 INTERGENIC
2L	11003863	2L_11003863_SNP [dm3] 2L_11003863_SNP [dm6]	C	T	3.482e^-4	0.883	UPSTREAM Nup154 INTRON RpL9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12611619	2L_12611619_SNP [dm3] 2L_12611619_SNP [dm6]	A	C	3.488e^-4	0.883	UPSTREAM Ref2 INTRON nub & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	14342048	3L_14342048_SNP [dm3] 3L_14348948_SNP [dm6]	G	A	3.490e^-4	0.883	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13115269	2L_13115269_SNP [dm3] 2L_13115269_SNP [dm6]	A	T	3.493e^-4	0.883	INTERGENIC
2R	7890853	2R_7890853_SNP [dm3] 2R_12003348_SNP [dm6]	A	G	3.497e^-4	0.883	SYNONYMOUS_CODING otk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16361976	2L_16361976_SNP [dm3] 2L_16361976_SNP [dm6]	G	A	3.510e^-4	0.885	INTERGENIC
2R	2731778	2R_2731778_SNP [dm3] 2R_6844273_SNP [dm6]	T	C	3.529e^-4	0.887	INTERGENIC	TF binding site mE1_TFBS_sbb
2R	11809724	2R_11809724_SNP [dm3] 2R_15922219_SNP [dm6]	A	T	3.534e^-4	0.887	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
X	21047495	X_21047495_SNP [dm3] X_21176468_SNP [dm6]	C	G	3.538e^-4	0.887	INTERGENIC
2R	19156275	2R_19156275_SNP [dm3] 2R_23268752_SNP [dm6]	T	G	3.540e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	19307385	2L_19307385_SNP [dm3] 2L_19307385_SNP [dm6]	A	G	3.544e^-4	0.887	INTERGENIC
X	18241704	X_18241704_SNP [dm3] X_18347671_SNP [dm6]	G	T	3.553e^-4	0.889	INTRON CG6123
3L	775429	3L_775429_SNP [dm3] 3L_775429_SNP [dm6]	A	G	3.561e^-4	0.889	INTERGENIC	TF binding site mE1_TFBS_inv
3L	14095876	3L_14095876_SNP [dm3] 3L_14102776_SNP [dm6]	T	C	3.575e^-4	0.89	DOWNSTREAM Sox21a INTERGENIC
3R	15130637	3R_15130637_SNP [dm3] 3R_19304915_SNP [dm6]	T	C	3.577e^-4	0.89	SYNONYMOUS_CODING Dl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	7325588	3L_7325588_SNP [dm3] 3L_7332488_SNP [dm6]	A	G	3.584e^-4	0.89	NON_SYNONYMOUS_CODING mus312 UTR_3_PRIME mus312 & 1 other	TF binding site mE1_TFBS_sens
X	15496744	X_15496744_SNP [dm3] X_15602711_SNP [dm6]	T	C	3.595e^-4	0.89	DOWNSTREAM sog INTERGENIC
2L	14579551	2L_14579551_SNP [dm3] 2L_14579551_SNP [dm6]	G	C	3.596e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	12046428	2R_12046428_SNP [dm3] 2R_16158923_SNP [dm6]	A	T	3.599e^-4	0.89	UPSTREAM CG10734 INTRON lbk
3L	10299359	3L_10299359_SNP [dm3] 3L_10306259_SNP [dm6]	A	G	3.603e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	13364233	2R_13364233_SNP [dm3] 2R_17476728_SNP [dm6]	G	T	3.606e^-4	0.89	UPSTREAM CG6520 DOWNSTREAM CG43110 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	25784396	3R_25784396_SNP [dm3] 3R_29958674_SNP [dm6]	A	G	3.611e^-4	0.89	INTRON TkR99D
2L	12286238	2L_12286238_SNP [dm3] 2L_12286238_SNP [dm6]	G	A	3.621e^-4	0.89	UPSTREAM aret INTRON aret
3L	15352542	3L_15352542_SNP [dm3] 3L_15359442_SNP [dm6]	T	G	3.621e^-4	0.89	INTERGENIC
3L	8714501	3L_8714501_SNP [dm3] 3L_8721401_SNP [dm6]	G	A	3.623e^-4	0.89	UTR_5_PRIME CG6511 UPSTREAM CG6511 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	15084789	X_15084789_SNP [dm3] X_15190756_SNP [dm6]	C	A	3.629e^-4	0.89	DOWNSTREAM CG43737 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	13040120	X_13040120_SNP [dm3] X_13146087_SNP [dm6]	T	G	3.630e^-4	0.89	INTRON CG32645
2L	12109369	2L_12109369_SNP [dm3] 2L_12109369_SNP [dm6]	C	T	3.639e^-4	0.89	UPSTREAM Phae1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	18658347	X_18658347_SNP [dm3] X_18764314_SNP [dm6]	C	T	3.647e^-4	0.89	DOWNSTREAM CCKLR-17D3 INTERGENIC
2L	11509801	2L_11509801_SNP [dm3] 2L_11509801_SNP [dm6]	A	G	3.648e^-4	0.89	SYNONYMOUS_CODING CG6509 UTR_3_PRIME CG6509
3R	17014229	3R_17014229_SNP [dm3] 3R_21188507_SNP [dm6]	C	T	3.650e^-4	0.89	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9485648	2L_9485648_SNP [dm3] 2L_9485648_SNP [dm6]	T	C	3.655e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14346376	2R_14346376_SNP [dm3] 2R_18458871_SNP [dm6]	T	A	3.657e^-4	0.89	DOWNSTREAM CG30116 INTRON CG30116
X	15078406	X_15078406_SNP [dm3] X_15184373_SNP [dm6]	G	A	3.663e^-4	0.89	INTRON CG43737
X	1369023	X_1369023_SNP [dm3] X_1474990_SNP [dm6]	G	C	3.678e^-4	0.893	INTRON Rab27	TF binding site mE1_TFBS_chinmo
3L	11458419	3L_11458419_SNP [dm3] 3L_11465319_SNP [dm6]	C	T	3.688e^-4	0.894	UTR_5_PRIME CG6140 INTRON CG6140	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
X	12290468	X_12290468_SNP [dm3] X_12396435_SNP [dm6]	T	A	3.692e^-4	0.894	INTERGENIC
2L	16368729	2L_16368729_SNP [dm3] 2L_16368729_SNP [dm6]	G	A	3.701e^-4	0.894	INTERGENIC
3L	14342015	3L_14342015_SNP [dm3] 3L_14348915_SNP [dm6]	T	A	3.704e^-4	0.894	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13939861	2L_13939861_SNP [dm3] 2L_13939861_SNP [dm6]	T	C	3.716e^-4	0.894	INTRON Ance-3
3L	11884475	3L_11884475_SNP [dm3] 3L_11891375_SNP [dm6]	T	A	3.717e^-4	0.894	INTRON CG44837
2L	7837102	2L_7837102_SNP [dm3] 2L_7837102_SNP [dm6]	G	T	3.718e^-4	0.894	INTERGENIC
2L	18503544	2L_18503544_SNP [dm3] 2L_18503544_SNP [dm6]	G	T	3.741e^-4	0.897	INTRON kon
3R	14967439	3R_14967439_SNP [dm3] 3R_19141717_SNP [dm6]	A	T	3.757e^-4	0.897	INTRON Ppcs
2R	11932578	2R_11932578_SNP [dm3] 2R_16045073_SNP [dm6]	G	A	3.761e^-4	0.897	SPLICE_SITE_REGION SP2353 INTRON SP2353
2L	18849665	2L_18849665_SNP [dm3] 2L_18849665_SNP [dm6]	T	A	3.764e^-4	0.897	INTRON CG17321
X	16299961	X_16299961_SNP [dm3] X_16405928_SNP [dm6]	C	T	3.764e^-4	0.897	UPSTREAM CG9981 & 1 other INTRON CG4301
X	5341828	X_5341828_SNP [dm3] X_5447795_SNP [dm6]	C	G	3.766e^-4	0.897	INTRON SPR
2R	16111604	2R_16111604_SNP [dm3] 2R_20224099_SNP [dm6]	T	A	3.766e^-4	0.897	INTERGENIC
2L	3626503	2L_3626503_SNP [dm3] 2L_3626503_SNP [dm6]	G	A	3.772e^-4	0.897	SYNONYMOUS_CODING for INTRON for	TF binding site mE1_TFBS_chinmo
3L	8458281	3L_8458281_SNP [dm3] 3L_8465181_SNP [dm6]	G	A	3.773e^-4	0.897	SYNONYMOUS_CODING Gug	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3L	16968360	3L_16968360_DEL [dm3] 3L_16975260_DEL [dm6]	CC	C	3.784e^-4	0.899	INTRON Exn	TF binding site mE1_TFBS_Kr
2R	14370344	2R_14370344_SNP [dm3] 2R_18482839_SNP [dm6]	G	C	3.803e^-4	0.899	INTRON CG30116
2R	15943649	2R_15943649_SNP [dm3] 2R_20056144_SNP [dm6]	A	G	3.806e^-4	0.899	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9005867	X_9005867_SNP [dm3] X_9111834_SNP [dm6]	T	A	3.811e^-4	0.899	INTRON AP-1gamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17967256	2R_17967256_INS [dm3] 2R_22079751_INS [dm6]	G	GACATAAGC	3.824e^-4	0.899	UPSTREAM Synj DOWNSTREAM GlcT-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14009340	3L_14009340_SNP [dm3] 3L_14016240_SNP [dm6]	G	A	3.833e^-4	0.899	SYNONYMOUS_CODING upSET	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	6726745	X_6726745_SNP [dm3] X_6832712_SNP [dm6]	G	T	3.837e^-4	0.899	UPSTREAM CG12796 INTRON nonC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8486175	2R_8486175_SNP [dm3] 2R_12598670_SNP [dm6]	A	T	3.840e^-4	0.899	INTRON Amph
X	15451729	X_15451729_SNP [dm3] X_15557696_SNP [dm6]	A	C	3.851e^-4	0.899	INTERGENIC
3L	11283497	3L_11283497_SNP [dm3] 3L_11290397_SNP [dm6]	A	G	3.856e^-4	0.899	INTRON CG6175
2R	7789241	2R_7789241_SNP [dm3] 2R_11901736_SNP [dm6]	T	C	3.856e^-4	0.899	DOWNSTREAM Zip48C INTRON MCPH1	TF binding site mE1_TFBS_sens
2R	16343014	2R_16343014_SNP [dm3] 2R_20455509_SNP [dm6]	T	C	3.872e^-4	0.899	INTRON CG12484
2R	20021239	2R_20021239_SNP [dm3] 2R_24133716_SNP [dm6]	A	G	3.879e^-4	0.899	UPSTREAM Zfrp8 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	887861	3L_887861_SNP [dm3] 3L_887861_SNP [dm6]	C	T	3.881e^-4	0.899	UPSTREAM CG32479 INTRON CG32479
3L	889684	3L_889684_SNP [dm3] 3L_889684_SNP [dm6]	T	C	3.881e^-4	0.899	SYNONYMOUS_CODING CG32479 UPSTREAM snoRNA:CG32479-b	TF binding site mE1_TFBS_chinmo
3L	889687	3L_889687_SNP [dm3] 3L_889687_SNP [dm6]	A	G	3.881e^-4	0.899	SYNONYMOUS_CODING CG32479 UPSTREAM snoRNA:CG32479-b	TF binding site mE1_TFBS_chinmo
2L	18510927	2L_18510927_SNP [dm3] 2L_18510927_SNP [dm6]	T	C	3.884e^-4	0.899	INTRON CG10178
3L	7335275	3L_7335275_SNP [dm3] 3L_7342175_SNP [dm6]	A	G	3.890e^-4	0.899	DOWNSTREAM lark INTRON CG8596	TF binding site mE1_TFBS_cad
2L	14579514	2L_14579514_SNP [dm3] 2L_14579514_SNP [dm6]	T	C	3.892e^-4	0.899	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
X	7967740	X_7967740_SNP [dm3] X_8073707_SNP [dm6]	T	C	3.893e^-4	0.899	SYNONYMOUS_CODING Upf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	6310031	X_6310031_SNP [dm3] X_6415998_SNP [dm6]	C	A	3.904e^-4	0.899	INTERGENIC
X	20631296	X_20631296_SNP [dm3] X_20760269_SNP [dm6]	C	A	3.920e^-4	0.899	DOWNSTREAM CR44710 & 1 other INTRON CR43838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	11793414	2L_11793414_SNP [dm3] 2L_11793414_SNP [dm6]	C	A	3.926e^-4	0.899	SYNONYMOUS_CODING CG14937 DOWNSTREAM crol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11793417	2L_11793417_SNP [dm3] 2L_11793417_SNP [dm6]	G	A	3.926e^-4	0.899	SYNONYMOUS_CODING CG14937 DOWNSTREAM crol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10283149	3L_10283149_SNP [dm3] 3L_10290049_SNP [dm6]	C	T	3.927e^-4	0.899	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	17790706	3R_17790706_SNP [dm3] 3R_21964984_SNP [dm6]	A	T	3.928e^-4	0.899	INTRON Eip93F
2R	9411219	2R_9411219_SNP [dm3] 2R_13523714_SNP [dm6]	C	A	3.944e^-4	0.899	DOWNSTREAM CG13331 INTRON Vmat
3R	24088657	3R_24088657_SNP [dm3] 3R_28262935_SNP [dm6]	G	C	3.949e^-4	0.899	NON_SYNONYMOUS_CODING CG43125 DOWNSTREAM CG43124
2L	13115685	2L_13115685_SNP [dm3] 2L_13115685_SNP [dm6]	C	A	3.949e^-4	0.899	INTERGENIC
2R	8456951	2R_8456951_SNP [dm3] 2R_12569446_SNP [dm6]	G	A	3.951e^-4	0.899	UPSTREAM stil DOWNSTREAM Cyp301a1 INTRON Ak6	TF binding site BDTNP1_TFBS_slp1
3L	1401893	3L_1401893_SNP [dm3] 3L_1401893_SNP [dm6]	T	A	3.951e^-4	0.899	DOWNSTREAM tRNA:E4:62Ad & 2 others INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	10823246	3L_10823246_SNP [dm3] 3L_10830146_SNP [dm6]	A	T	3.953e^-4	0.899	INTERGENIC
2L	7943692	2L_7943692_INS [dm3] 2L_7943692_INS [dm6]	T	TTGAACTTTGAATT...	3.954e^-4	0.899	INTRON Snoo
2L	11382104	2L_11382104_SNP [dm3] 2L_11382104_SNP [dm6]	G	A	3.968e^-4	0.899	INTERGENIC	regulatory region REDfly_CRMs
X	4444204	X_4444204_INS [dm3] X_4550171_INS [dm6]	G	GCTTAGAGAACTCAGAGAAT...	3.973e^-4	0.899	UTR_3_PRIME CG11436 DOWNSTREAM CG15912 INTRON CR32773
X	4444142	X_4444142_SNP [dm3] X_4550109_SNP [dm6]	A	T	3.981e^-4	0.899	UTR_3_PRIME CG11436 DOWNSTREAM CG15912 INTRON CR32773
3L	10300678	3L_10300678_SNP [dm3] 3L_10307578_SNP [dm6]	G	A	3.991e^-4	0.899	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16368609	2L_16368609_SNP [dm3] 2L_16368609_SNP [dm6]	G	A	3.995e^-4	0.899	INTERGENIC
2L	12606656	2L_12606656_INS [dm3] 2L_12606656_INS [dm6]	A	ACTCATATATACGAGGCA...	4.008e^-4	0.899	INTRON nub	TF binding site BDTNP1_TFBS_da
X	14910741	X_14910741_SNP [dm3] X_15016708_SNP [dm6]	G	T	4.010e^-4	0.899	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
2L	11434906	2L_11434906_SNP [dm3] 2L_11434906_SNP [dm6]	A	G	4.015e^-4	0.899	UTR_3_PRIME salm
2R	817234	2R_817234_SNP [dm3] 2R_4929729_SNP [dm6]	G	C	4.021e^-4	0.899	INTRON Ir41a
3L	9793484	3L_9793484_SNP [dm3] 3L_9800384_SNP [dm6]	C	T	4.025e^-4	0.899	UTR_3_PRIME Ilp2 DOWNSTREAM Ilp3 INTRON CG32052
2R	20286090	2R_20286090_SNP [dm3] 2R_24398567_SNP [dm6]	G	A	4.026e^-4	0.899	NON_SYNONYMOUS_CODING slik	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12496722	3L_12496722_SNP [dm3] 3L_12503622_SNP [dm6]	G	A	4.030e^-4	0.899	UPSTREAM vih DOWNSTREAM CG10681 INTRON CG10646	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	9804691	3L_9804691_SNP [dm3] 3L_9811591_SNP [dm6]	A	G	4.037e^-4	0.899	INTERGENIC
2R	14575252	2R_14575252_SNP [dm3] 2R_18687747_SNP [dm6]	T	G	4.038e^-4	0.899	UPSTREAM CG44433 & 1 other INTRON CG42855	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	7796669	2L_7796669_SNP [dm3] 2L_7796669_SNP [dm6]	T	C	4.045e^-4	0.899	UTR_3_PRIME Herp UPSTREAM LKR DOWNSTREAM CR44825
3R	16601997	3R_16601997_SNP [dm3] 3R_20776275_SNP [dm6]	G	T	4.053e^-4	0.899	INTRON Syp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	15967108	2L_15967108_SNP [dm3] 2L_15967108_SNP [dm6]	A	G	4.054e^-4	0.899	INTERGENIC
2R	10029732	2R_10029732_SNP [dm3] 2R_14142227_SNP [dm6]	A	C	4.064e^-4	0.899	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_ttk
X	8925219	X_8925219_DEL [dm3] X_9031186_DEL [dm6]	TT	C	4.065e^-4	0.899	INTRON CR43836 & 1 other
X	14913354	X_14913354_SNP [dm3] X_15019321_SNP [dm6]	G	A	4.066e^-4	0.899	INTRON hiw	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8590277	2L_8590277_SNP [dm3] 2L_8590277_SNP [dm6]	A	C	4.082e^-4	0.899	DOWNSTREAM CR43855 INTRON Sema-1a
2L	14459419	2L_14459419_SNP [dm3] 2L_14459419_SNP [dm6]	T	C	4.089e^-4	0.899	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	9487363	2L_9487363_SNP [dm3] 2L_9487363_SNP [dm6]	T	A	4.089e^-4	0.899	INTERGENIC
2R	3485328	2R_3485328_DEL [dm3] 2R_7597823_DEL [dm6]	AA	A	4.091e^-4	0.899	INTRON CG1358	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12297020	2L_12297020_DEL [dm3] 2L_12297020_DEL [dm6]	GG	G	4.098e^-4	0.899	INTRON aret
2L	3550216	2L_3550216_INS [dm3] 2L_3550216_INS [dm6]	T	TGTAT	4.101e^-4	0.899	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2L	10895324	2L_10895324_SNP [dm3] 2L_10895324_SNP [dm6]	C	T	4.106e^-4	0.899	EXON CR44491
2R	2727993	2R_2727993_SNP [dm3] 2R_6840488_SNP [dm6]	A	C	4.106e^-4	0.899	INTERGENIC
2L	11427600	2L_11427600_SNP [dm3] 2L_11427600_SNP [dm6]	A	T	4.108e^-4	0.899	INTERGENIC
X	15077232	X_15077232_SNP [dm3] X_15183199_SNP [dm6]	C	A	4.111e^-4	0.899	INTRON CG43737
3L	10180182	3L_10180182_SNP [dm3] 3L_10187082_SNP [dm6]	T	C	4.112e^-4	0.899	UPSTREAM dpr10 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	20761937	3R_20761937_SNP [dm3] 3R_24936215_SNP [dm6]	A	C	4.123e^-4	0.899	INTRON Osbp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	8981649	2L_8981649_SNP [dm3] 2L_8981649_SNP [dm6]	A	C	4.124e^-4	0.899	DOWNSTREAM CG18662 INTRON CG13101
2L	10897703	2L_10897703_SNP [dm3] 2L_10897703_SNP [dm6]	A	G	4.125e^-4	0.899	INTERGENIC
3L	7389596	3L_7389596_SNP [dm3] 3L_7396496_SNP [dm6]	C	G	4.132e^-4	0.899	NON_SYNONYMOUS_CODING CG32379 DOWNSTREAM CG8563	TF binding site mE1_TFBS_HSA
3L	9730696	3L_9730696_INS [dm3] 3L_9737596_INS [dm6]	A	ATTGTA	4.135e^-4	0.899	INTRON CG42268
2L	7696870	2L_7696870_SNP [dm3] 2L_7696870_SNP [dm6]	T	G	4.141e^-4	0.899	INTRON Tep2
2L	16368681	2L_16368681_SNP [dm3] 2L_16368681_SNP [dm6]	C	T	4.141e^-4	0.899	INTERGENIC
3R	13632243	3R_13632243_SNP [dm3] 3R_17806521_SNP [dm6]	A	C	4.145e^-4	0.899	NON_SYNONYMOUS_CODING CG17801 DOWNSTREAM CG7357
3L	7335274	3L_7335274_SNP [dm3] 3L_7342174_SNP [dm6]	A	G	4.147e^-4	0.899	DOWNSTREAM lark INTRON CG8596	TF binding site mE1_TFBS_cad
2L	19578004	2L_19578004_DEL [dm3] 2L_19578004_DEL [dm6]	ATATTACT	A	4.148e^-4	0.899	UPSTREAM spi INTRON msb1l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	1738776	3L_1738776_SNP [dm3] 3L_1738776_SNP [dm6]	A	C	4.161e^-4	0.899	UPSTREAM CG18173 & 1 other INTRON Gk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	7310004	2R_7310004_SNP [dm3] 2R_11422499_SNP [dm6]	T	G	4.164e^-4	0.899	INTRON Drip
2L	13115481	2L_13115481_SNP [dm3] 2L_13115481_SNP [dm6]	A	G	4.165e^-4	0.899	INTERGENIC
2R	18200714	2R_18200714_SNP [dm3] 2R_22313209_SNP [dm6]	G	T	4.166e^-4	0.899	INTRON CR44758
X	14661370	X_14661370_SNP [dm3] X_14767337_SNP [dm6]	A	T	4.167e^-4	0.899	INTERGENIC
2L	10796452	2L_10796452_SNP [dm3] 2L_10796452_SNP [dm6]	T	G	4.168e^-4	0.899	INTRON CG31869
2L	10796456	2L_10796456_SNP [dm3] 2L_10796456_SNP [dm6]	T	G	4.168e^-4	0.899	INTRON CG31869
2R	18043651	2R_18043651_SNP [dm3] 2R_22156146_SNP [dm6]	T	G	4.173e^-4	0.899	INTRON a	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	19777754	X_19777754_DEL [dm3] X_19883721_DEL [dm6]	TT	T	4.184e^-4	0.9	INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	12815744	3L_12815744_SNP [dm3] 3L_12822644_SNP [dm6]	A	G	4.187e^-4	0.9	SYNONYMOUS_CODING CG42588
3R	20761968	3R_20761968_SNP [dm3] 3R_24936246_SNP [dm6]	T	G	4.198e^-4	0.9	INTRON Osbp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	16764410	3R_16764410_SNP [dm3] 3R_20938688_SNP [dm6]	T	A	4.209e^-4	0.9	INTRON CG31191
2R	7508869	2R_7508869_SNP [dm3] 2R_11621364_SNP [dm6]	T	A	4.216e^-4	0.9	SYNONYMOUS_CODING CG9005
2R	16691903	2R_16691903_SNP [dm3] 2R_20804398_SNP [dm6]	C	T	4.218e^-4	0.9	INTERGENIC
X	15077812	X_15077812_SNP [dm3] X_15183779_SNP [dm6]	G	C	4.218e^-4	0.9	INTRON CG43737
3R	17308288	3R_17308288_SNP [dm3] 3R_21482566_SNP [dm6]	T	C	4.220e^-4	0.9	SYNONYMOUS_CODING CG7922	TF binding site BDTNP1_TFBS_z mE1_TFBS_sens
X	16735465	X_16735465_SNP [dm3] X_16841432_SNP [dm6]	G	A	4.225e^-4	0.9	INTRON RSG7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14434210	2R_14434210_SNP [dm3] 2R_18546705_SNP [dm6]	A	G	4.226e^-4	0.9	INTRON Rgk2
2L	12608745	2L_12608745_SNP [dm3] 2L_12608745_SNP [dm6]	G	C	4.230e^-4	0.9	INTRON nub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	15026144	X_15026144_SNP [dm3] X_15132111_SNP [dm6]	A	T	4.235e^-4	0.9	INTRON drd
2R	15557956	2R_15557956_SNP [dm3] 2R_19670451_SNP [dm6]	G	A	4.251e^-4	0.9	UPSTREAM isopeptidase-T-3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_run mE1_TFBS_Ubx
X	6336704	X_6336704_SNP [dm3] X_6442671_SNP [dm6]	T	C	4.260e^-4	0.9	INTRON CG42340
3R	17717674	3R_17717674_SNP [dm3] 3R_21891952_SNP [dm6]	T	C	4.272e^-4	0.9	INTRON CG6678	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9531350	3R_9531350_SNP [dm3] 3R_13705628_SNP [dm6]	T	C	4.282e^-4	0.9	UPSTREAM Adgf-D INTERGENIC
2R	18979544	2R_18979544_SNP [dm3] 2R_23092021_SNP [dm6]	G	A	4.289e^-4	0.9	INTRON CG9876
2L	8890770	2L_8890770_SNP [dm3] 2L_8890770_SNP [dm6]	T	G	4.295e^-4	0.9	UPSTREAM CG42713 INTERGENIC
2L	18463265	2L_18463265_SNP [dm3] 2L_18463265_SNP [dm6]	G	C	4.307e^-4	0.9	INTRON let-7-C
3R	13344020	3R_13344020_SNP [dm3] 3R_17518298_SNP [dm6]	G	C	4.307e^-4	0.9	EXON CR44349
X	14909319	X_14909319_SNP [dm3] X_15015286_SNP [dm6]	A	G	4.309e^-4	0.9	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
2R	16734138	2R_16734138_SNP [dm3] 2R_20846633_SNP [dm6]	T	C	4.322e^-4	0.9	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	11889311	2L_11889311_SNP [dm3] 2L_11889311_SNP [dm6]	T	G	4.325e^-4	0.9	INTRON Pde1c
3L	10283014	3L_10283014_SNP [dm3] 3L_10289914_SNP [dm6]	G	A	4.332e^-4	0.9	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	15086750	X_15086750_SNP [dm3] X_15192717_SNP [dm6]	C	T	4.342e^-4	0.9	INTERGENIC
X	15077328	X_15077328_SNP [dm3] X_15183295_SNP [dm6]	G	T	4.347e^-4	0.9	INTRON CG43737
X	15078027	X_15078027_SNP [dm3] X_15183994_SNP [dm6]	C	A	4.347e^-4	0.9	SPLICE_SITE_REGION CG43737 INTRON CG43737
X	15078452	X_15078452_SNP [dm3] X_15184419_SNP [dm6]	C	T	4.347e^-4	0.9	INTRON CG43737
X	15078458	X_15078458_INS [dm3] X_15184425_INS [dm6]	A	AG	4.347e^-4	0.9	INTRON CG43737
X	15078613	X_15078613_SNP [dm3] X_15184580_SNP [dm6]	A	T	4.347e^-4	0.9	INTRON CG43737
X	15080779	X_15080779_SNP [dm3] X_15186746_SNP [dm6]	C	G	4.347e^-4	0.9	NON_SYNONYMOUS_CODING CG43737
3L	3886459	3L_3886459_SNP [dm3] 3L_3886459_SNP [dm6]	T	C	4.349e^-4	0.9	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	15446686	X_15446686_MNP [dm3] X_15552653_MNP [dm6]	TCA	ATG	4.359e^-4	0.9	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	8340145	2R_8340145_SNP [dm3] 2R_12452640_SNP [dm6]	T	C	4.361e^-4	0.9	UTR_3_PRIME Dyb UPSTREAM Lac	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
2L	18503490	2L_18503490_SNP [dm3] 2L_18503490_SNP [dm6]	C	T	4.362e^-4	0.9	INTRON kon
2L	20762297	2L_20762297_SNP [dm3] 2L_20762297_SNP [dm6]	A	G	4.364e^-4	0.9	DOWNSTREAM dia INTRON dia	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8590608	2L_8590608_SNP [dm3] 2L_8590608_SNP [dm6]	A	T	4.366e^-4	0.9	INTRON Sema-1a & 1 other
2R	17941279	2R_17941279_SNP [dm3] 2R_22053774_SNP [dm6]	C	A	4.367e^-4	0.9	INTERGENIC
2L	19282538	2L_19282538_SNP [dm3] 2L_19282538_SNP [dm6]	G	A	4.372e^-4	0.9	INTERGENIC
2R	10933985	2R_10933985_SNP [dm3] 2R_15046480_SNP [dm6]	G	T	4.373e^-4	0.9	INTERGENIC
X	15496864	X_15496864_SNP [dm3] X_15602831_SNP [dm6]	G	T	4.376e^-4	0.9	DOWNSTREAM sog INTERGENIC
3L	5908044	3L_5908044_DEL [dm3] 3L_5914944_DEL [dm6]	CATTAGC	C	4.393e^-4	0.902	INTRON CG13288
2R	17976085	2R_17976085_SNP [dm3] 2R_22088580_SNP [dm6]	T	A	4.397e^-4	0.902	UTR_5_PRIME CG13502 DOWNSTREAM CG43393
2R	11811416	2R_11811416_SNP [dm3] 2R_15923911_SNP [dm6]	G	T	4.400e^-4	0.902	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad
2L	13599076	2L_13599076_SNP [dm3] 2L_13599076_SNP [dm6]	A	G	4.406e^-4	0.902	INTRON kuz
2L	11100948	2L_11100948_SNP [dm3] 2L_11100948_SNP [dm6]	C	G	4.408e^-4	0.902	UPSTREAM Ge-1 DOWNSTREAM Reps INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2L	10897122	2L_10897122_SNP [dm3] 2L_10897122_SNP [dm6]	T	C	4.438e^-4	0.904	INTERGENIC
3R	9869214	3R_9869214_SNP [dm3] 3R_14043492_SNP [dm6]	T	C	4.451e^-4	0.904	INTERGENIC
3R	15372087	3R_15372087_SNP [dm3] 3R_19546365_SNP [dm6]	T	C	4.452e^-4	0.904	INTRON Dys
X	14661387	X_14661387_SNP [dm3] X_14767354_SNP [dm6]	A	C	4.456e^-4	0.904	INTERGENIC
3L	8714482	3L_8714482_SNP [dm3] 3L_8721382_SNP [dm6]	A	C	4.457e^-4	0.904	UTR_5_PRIME CG6511 UPSTREAM CG6511 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	8714486	3L_8714486_DEL [dm3] 3L_8721386_DEL [dm6]	TT	C	4.457e^-4	0.904	UTR_5_PRIME CG6511 UPSTREAM CG6511 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	8714493	3L_8714493_SNP [dm3] 3L_8721393_SNP [dm6]	T	C	4.457e^-4	0.904	START_GAINED CG6511 UTR_5_PRIME CG6511 UPSTREAM CG6511 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	13260573	X_13260573_SNP [dm3] X_13366540_SNP [dm6]	G	A	4.467e^-4	0.904	UTR_3_PRIME Syt12
2L	20260518	2L_20260518_SNP [dm3] 2L_20260518_SNP [dm6]	C	A	4.470e^-4	0.904	INTERGENIC
3R	17790794	3R_17790794_SNP [dm3] 3R_21965072_SNP [dm6]	G	T	4.474e^-4	0.904	INTRON Eip93F
2L	8934487	2L_8934487_SNP [dm3] 2L_8934487_SNP [dm6]	C	A	4.482e^-4	0.904	UPSTREAM Tsp29Fa DOWNSTREAM CG34398 INTRON Tsp29Fa
2R	16625264	2R_16625264_SNP [dm3] 2R_20737759_SNP [dm6]	G	C	4.497e^-4	0.904	INTRON dpr
2L	11384865	2L_11384865_SNP [dm3] 2L_11384865_SNP [dm6]	A	G	4.504e^-4	0.904	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2R	18113305	2R_18113305_SNP [dm3] 2R_22225800_SNP [dm6]	T	A	4.507e^-4	0.904	INTRON Oatp58Dc
2L	13581078	2L_13581078_SNP [dm3] 2L_13581078_SNP [dm6]	T	A	4.508e^-4	0.904	INTRON kuz
2L	19529082	2L_19529082_SNP [dm3] 2L_19529082_SNP [dm6]	T	C	4.512e^-4	0.904	UPSTREAM CG10165 INTRON CG10165 & 1 other
3L	2886760	3L_2886760_SNP [dm3] 3L_2886760_SNP [dm6]	T	C	4.528e^-4	0.904	SYNONYMOUS_CODING spz5
2L	6788557	2L_6788557_SNP [dm3] 2L_6788557_SNP [dm6]	G	C	4.532e^-4	0.904	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	8350035	2R_8350035_DEL [dm3] 2R_12462530_DEL [dm6]	TT	T	4.533e^-4	0.904	INTRON Lac	TF binding site BDTNP1_TFBS_dl
2L	18042201	2L_18042201_SNP [dm3] 2L_18042201_SNP [dm6]	C	T	4.535e^-4	0.904	INTRON rdo
3R	20725807	3R_20725807_SNP [dm3] 3R_24900085_SNP [dm6]	G	T	4.535e^-4	0.904	NON_SYNONYMOUS_CODING CG13643	TF binding site mE1_TFBS_cad
3R	13625454	3R_13625454_SNP [dm3] 3R_17799732_SNP [dm6]	A	G	4.543e^-4	0.904	SYNONYMOUS_CODING CG17803	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8714746	3L_8714746_SNP [dm3] 3L_8721646_SNP [dm6]	C	T	4.544e^-4	0.904	UPSTREAM CG32022 INTRON CG6511	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	13148015	2R_13148015_SNP [dm3] 2R_17260510_SNP [dm6]	T	A	4.544e^-4	0.904	INTRON mbl	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
2R	14568316	2R_14568316_SNP [dm3] 2R_18680811_SNP [dm6]	T	A	4.544e^-4	0.904	NON_SYNONYMOUS_CODING CG44435 UTR_3_PRIME CG44434	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	14156102	3L_14156102_SNP [dm3] 3L_14163002_SNP [dm6]	G	T	4.555e^-4	0.904	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17959601	2R_17959601_SNP [dm3] 2R_22072096_SNP [dm6]	G	A	4.567e^-4	0.904	NON_SYNONYMOUS_CODING CG11474 UPSTREAM CG11475	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15078456	X_15078456_SNP [dm3] X_15184423_SNP [dm6]	G	T	4.570e^-4	0.904	INTRON CG43737
2R	17961031	2R_17961031_DEL [dm3] 2R_22073526_DEL [dm6]	CG	C	4.594e^-4	0.904	UPSTREAM CG11474 DOWNSTREAM CG2921 INTERGENIC	TF binding site mE1_TFBS_cad
2R	17962839	2R_17962839_SNP [dm3] 2R_22075334_SNP [dm6]	T	C	4.594e^-4	0.904	UPSTREAM GlcT-1 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	13110787	2L_13110787_SNP [dm3] 2L_13110787_SNP [dm6]	A	T	4.596e^-4	0.904	INTERGENIC
2L	19304553	2L_19304553_SNP [dm3] 2L_19304553_SNP [dm6]	C	T	4.605e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14474934	X_14474934_SNP [dm3] X_14580901_SNP [dm6]	T	C	4.607e^-4	0.904	SYNONYMOUS_CODING CG14414 INTRON CG14414	TF binding site BDTNP1_TFBS_dl
3L	17146806	3L_17146806_SNP [dm3] 3L_17153706_SNP [dm6]	T	A	4.621e^-4	0.904	INTRON Rbp6
X	3873502	X_3873502_SNP [dm3] X_3979469_SNP [dm6]	C	T	4.625e^-4	0.904	INTERGENIC
2R	16180551	2R_16180551_SNP [dm3] 2R_20293046_SNP [dm6]	A	G	4.635e^-4	0.904	UPSTREAM CR44639 DOWNSTREAM CR44638 INTERGENIC
X	2615506	X_2615506_SNP [dm3] X_2721473_SNP [dm6]	C	T	4.637e^-4	0.904	NON_SYNONYMOUS_CODING fs_1_Yb	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	25938395	3R_25938395_SNP [dm3] 3R_30112673_SNP [dm6]	C	A	4.639e^-4	0.904	INTRON sima
2R	11179042	2R_11179042_SNP [dm3] 2R_15291537_SNP [dm6]	C	A	4.641e^-4	0.904	UPSTREAM Trpm INTRON Trpm
2R	845866	2R_845866_SNP [dm3] 2R_4958361_SNP [dm6]	A	G	4.644e^-4	0.904	INTRON Ir41a	transposable element FlyBase
2R	6224784	2R_6224784_SNP [dm3] 2R_10337279_SNP [dm6]	T	C	4.660e^-4	0.904	INTRON CG42732	TF binding site mE1_TFBS_cad
2R	6224786	2R_6224786_SNP [dm3] 2R_10337281_SNP [dm6]	C	A	4.660e^-4	0.904	INTRON CG42732	TF binding site mE1_TFBS_cad
X	2685974	X_2685974_SNP [dm3] X_2791941_SNP [dm6]	G	A	4.662e^-4	0.904	SYNONYMOUS_CODING w INTRON kirre	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	14919243	X_14919243_SNP [dm3] X_15025210_SNP [dm6]	T	A	4.666e^-4	0.904	INTRON hiw & 1 other	TF binding site BDTNP1_TFBS_dl
2R	18217029	2R_18217029_SNP [dm3] 2R_22329524_SNP [dm6]	C	T	4.668e^-4	0.904	NON_SYNONYMOUS_CODING CG34207 UPSTREAM pgc DOWNSTREAM T3dh & 1 other
2L	7103660	2L_7103660_SNP [dm3] 2L_7103660_SNP [dm6]	C	T	4.671e^-4	0.904	INTRON Pvf3
2L	13046368	2L_13046368_SNP [dm3] 2L_13046368_SNP [dm6]	A	C	4.677e^-4	0.904	INTRON CG9932
2L	3704326	2L_3704326_DEL [dm3] 2L_3704326_DEL [dm6]	ACCATCGAA	A	4.683e^-4	0.904	UTR_3_PRIME CG31778 DOWNSTREAM CG2816
2L	13600478	2L_13600478_SNP [dm3] 2L_13600478_SNP [dm6]	A	C	4.691e^-4	0.904	INTRON kuz
3L	8714731	3L_8714731_SNP [dm3] 3L_8721631_SNP [dm6]	C	A	4.701e^-4	0.904	UPSTREAM CG32022 INTRON CG6511	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	11192137	2L_11192137_INS [dm3] 2L_11192137_INS [dm6]	C	CT	4.702e^-4	0.904	INTRON Ca-beta
2R	14127159	2R_14127159_SNP [dm3] 2R_18239654_SNP [dm6]	G	A	4.708e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	843628	2R_843628_SNP [dm3] 2R_4956123_SNP [dm6]	T	G	4.716e^-4	0.904	INTRON Ir41a
3L	7325589	3L_7325589_SNP [dm3] 3L_7332489_SNP [dm6]	G	A	4.719e^-4	0.904	SYNONYMOUS_CODING mus312 UTR_3_PRIME mus312 & 1 other	TF binding site mE1_TFBS_sens
X	16048552	X_16048552_DEL [dm3] X_16154519_DEL [dm6]	AG	A	4.719e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
X	13597109	X_13597109_SNP [dm3] X_13703076_SNP [dm6]	C	A	4.723e^-4	0.904	UPSTREAM NnaD INTRON NnaD & 1 other
2R	16663863	2R_16663863_SNP [dm3] 2R_20776358_SNP [dm6]	G	A	4.725e^-4	0.904	SYNONYMOUS_CODING CG43709 DOWNSTREAM CG13443 & 1 other
3R	17790921	3R_17790921_SNP [dm3] 3R_21965199_SNP [dm6]	T	C	4.726e^-4	0.904	INTRON Eip93F
3R	14967424	3R_14967424_SNP [dm3] 3R_19141702_SNP [dm6]	C	G	4.727e^-4	0.904	INTRON Ppcs
2R	18925501	2R_18925501_SNP [dm3] 2R_23037978_SNP [dm6]	A	T	4.728e^-4	0.904	INTRON twi & 1 other
2R	16738605	2R_16738605_SNP [dm3] 2R_20851100_SNP [dm6]	G	T	4.728e^-4	0.904	SYNONYMOUS_CODING CG9993	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	14038512	2L_14038512_SNP [dm3] 2L_14038512_SNP [dm6]	G	C	4.740e^-4	0.904	UPSTREAM CR45284 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	10319980	2R_10319980_SNP [dm3] 2R_14432475_SNP [dm6]	G	A	4.749e^-4	0.904	UPSTREAM phyl DOWNSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15325551	2L_15325551_SNP [dm3] 2L_15325551_SNP [dm6]	C	T	4.749e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	18443388	2L_18443388_DEL [dm3] 2L_18443388_DEL [dm6]	ATATATTGGAAATTCGAA...	C	4.754e^-4	0.904	UPSTREAM RpS26 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_run
2L	13939847	2L_13939847_SNP [dm3] 2L_13939847_SNP [dm6]	A	T	4.757e^-4	0.904	INTRON Ance-3
2R	17960891	2R_17960891_SNP [dm3] 2R_22073386_SNP [dm6]	T	G	4.759e^-4	0.904	UTR_5_PRIME CG11474 UPSTREAM CG11474 DOWNSTREAM CG2921
2R	18461100	2R_18461100_SNP [dm3] 2R_22573595_SNP [dm6]	T	A	4.763e^-4	0.904	INTRON dnr1
2L	10037266	2L_10037266_SNP [dm3] 2L_10037266_SNP [dm6]	G	A	4.767e^-4	0.904	SYNONYMOUS_CODING obst-B
2L	10659344	2L_10659344_SNP [dm3] 2L_10659344_SNP [dm6]	C	G	4.767e^-4	0.904	DOWNSTREAM CG45690 INTERGENIC
3L	3890995	3L_3890995_SNP [dm3] 3L_3890995_SNP [dm6]	A	T	4.795e^-4	0.904	DOWNSTREAM CR45422 INTERGENIC
2L	19307734	2L_19307734_SNP [dm3] 2L_19307734_SNP [dm6]	A	T	4.795e^-4	0.904	INTERGENIC
3L	10109053	3L_10109053_SNP [dm3] 3L_10115953_SNP [dm6]	G	A	4.801e^-4	0.904	INTRON dpr6
3R	9354354	3R_9354354_SNP [dm3] 3R_13528632_SNP [dm6]	C	A	4.807e^-4	0.904	UTR_3_PRIME CG42778
3L	14085272	3L_14085272_SNP [dm3] 3L_14092172_SNP [dm6]	G	A	4.809e^-4	0.904	INTERGENIC
2R	2736102	2R_2736102_SNP [dm3] 2R_6848597_SNP [dm6]	G	A	4.809e^-4	0.904	INTERGENIC
2R	9411266	2R_9411266_SNP [dm3] 2R_13523761_SNP [dm6]	T	C	4.810e^-4	0.904	DOWNSTREAM CG13331 INTRON Vmat
3R	14967442	3R_14967442_SNP [dm3] 3R_19141720_SNP [dm6]	C	A	4.821e^-4	0.904	INTRON Ppcs
2R	15166995	2R_15166995_SNP [dm3] 2R_19279490_SNP [dm6]	C	T	4.832e^-4	0.904	SYNONYMOUS_CODING rib	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6016237	X_6016237_SNP [dm3] X_6122204_SNP [dm6]	T	C	4.832e^-4	0.904	INTRON Ca-alpha1T	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13369295	3R_13369295_SNP [dm3] 3R_17543573_SNP [dm6]	A	C	4.832e^-4	0.904	SYNONYMOUS_CODING SF1 UTR_3_PRIME SF1 DOWNSTREAM SF1
3L	1401389	3L_1401389_SNP [dm3] 3L_1401389_SNP [dm6]	G	A	4.840e^-4	0.904	UTR_3_PRIME CG32320 UPSTREAM tRNA:E4:62Ad & 1 other INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	19287150	2L_19287150_SNP [dm3] 2L_19287150_SNP [dm6]	C	A	4.840e^-4	0.904	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad

Missing results

By genomic position
Variant impact
Gene name

mn_Dev_Time_Lead phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results