DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.936e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.02627

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	13.2694	0.0013
In_2R_NS	16.5718	0.0003

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2228 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	16035506	X_16035506_SNP [dm3] X_16141473_SNP [dm6]	A	G	6.738e^-7	0.64	INTRON disco-r
2R	18455476	2R_18455476_SNP [dm3] 2R_22567971_SNP [dm6]	G	A	6.828e^-7	0.64	INTRON dnr1
X	6704289	X_6704289_SNP [dm3] X_6810256_SNP [dm6]	G	T	1.026e^-6	0.642	NON_SYNONYMOUS_CODING pod1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19789418	2R_19789418_SNP [dm3] 2R_23901895_SNP [dm6]	C	G	1.931e^-6	0.658	NON_SYNONYMOUS_CODING Lpt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12788320	2R_12788320_SNP [dm3] 2R_16900815_SNP [dm6]	A	C	1.980e^-6	0.658	INTRON inaC
2R	12383797	2R_12383797_INS [dm3] 2R_16496292_INS [dm6]	A	CT	2.828e^-6	0.658	DOWNSTREAM CG7813 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18427191	2R_18427191_SNP [dm3] 2R_22539686_SNP [dm6]	T	C	3.832e^-6	0.658	INTRON px
2L	11865268	2L_11865268_INS [dm3] 2L_11865268_INS [dm6]	A	AAAA	4.210e^-6	0.658	INTRON Pde1c
X	11821675	X_11821675_SNP [dm3] X_11927642_SNP [dm6]	G	A	5.592e^-6	0.658	SYNONYMOUS_CODING CG10362
2L	10665030	2L_10665030_SNP [dm3] 2L_10665030_SNP [dm6]	T	A	5.733e^-6	0.658	INTRON CG31871
2L	5787358	2L_5787358_SNP [dm3] 2L_5787358_SNP [dm6]	C	T	5.747e^-6	0.658	INTRON CG9171
2R	19570894	2R_19570894_SNP [dm3] 2R_23683371_SNP [dm6]	C	T	6.392e^-6	0.658	UPSTREAM St3 DOWNSTREAM St1 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	8971396	X_8971396_SNP [dm3] X_9077363_SNP [dm6]	T	C	6.951e^-6	0.658	INTRON CG44325	TF binding site mE1_TFBS_inv
3R	18622502	3R_18622502_SNP [dm3] 3R_22796780_SNP [dm6]	T	C	7.485e^-6	0.658	INTERGENIC
2L	9194548	2L_9194548_SNP [dm3] 2L_9194548_SNP [dm6]	G	T	7.860e^-6	0.658	INTRON tai
3L	11980965	3L_11980965_SNP [dm3] 3L_11987865_SNP [dm6]	C	T	7.902e^-6	0.658	SYNONYMOUS_CODING CG6938	TF binding site mE1_TFBS_cad
2L	11865278	2L_11865278_SNP [dm3] 2L_11865278_SNP [dm6]	G	A	9.014e^-6	0.658	INTRON Pde1c
2R	12383782	2R_12383782_SNP [dm3] 2R_16496277_SNP [dm6]	C	T	9.324e^-6	0.658	DOWNSTREAM CG7813 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	16592979	X_16592979_SNP [dm3] X_16698946_SNP [dm6]	C	A	9.755e^-6	0.658	DOWNSTREAM CG9676 INTRON CG4678
2R	16706777	2R_16706777_SNP [dm3] 2R_20819272_SNP [dm6]	G	A	1.006e^-5	0.658	INTERGENIC
2L	1041146	2L_1041146_SNP [dm3] 2L_1041146_SNP [dm6]	C	G	1.092e^-5	0.658	INTRON IA-2
2R	19593567	2R_19593567_SNP [dm3] 2R_23706044_SNP [dm6]	G	C	1.101e^-5	0.658	NON_SYNONYMOUS_CODING l_2_not UPSTREAM l_2_tid DOWNSTREAM l_2_dtl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18704267	3R_18704267_SNP [dm3] 3R_22878545_SNP [dm6]	C	T	1.180e^-5	0.658	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	12263837	X_12263837_SNP [dm3] X_12369804_SNP [dm6]	A	C	1.210e^-5	0.658	INTERGENIC
3R	24996775	3R_24996775_SNP [dm3] 3R_29171053_SNP [dm6]	C	T	1.210e^-5	0.658	SYNONYMOUS_CODING CG11898 DOWNSTREAM CG14509	TF binding site mE1_TFBS_kn
2R	16247137	2R_16247137_SNP [dm3] 2R_20359632_SNP [dm6]	T	C	1.230e^-5	0.658	INTERGENIC
2R	16247151	2R_16247151_SNP [dm3] 2R_20359646_SNP [dm6]	C	T	1.247e^-5	0.658	INTERGENIC
2L	7576820	2L_7576820_SNP [dm3] 2L_7576820_SNP [dm6]	T	A	1.287e^-5	0.658	UPSTREAM RapGAP1 INTRON RapGAP1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	8427950	X_8427950_INS [dm3] X_8533917_INS [dm6]	C	CGGAC	1.308e^-5	0.658	INTRON Nrg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7577021	2L_7577021_SNP [dm3] 2L_7577021_SNP [dm6]	C	T	1.367e^-5	0.658	UPSTREAM RapGAP1 INTRON RapGAP1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
X	11821678	X_11821678_SNP [dm3] X_11927645_SNP [dm6]	T	G	1.422e^-5	0.658	SYNONYMOUS_CODING CG10362
3R	18622654	3R_18622654_SNP [dm3] 3R_22796932_SNP [dm6]	C	T	1.435e^-5	0.658	INTERGENIC
X	16035639	X_16035639_SNP [dm3] X_16141606_SNP [dm6]	A	G	1.457e^-5	0.658	INTRON disco-r
X	15501795	X_15501795_SNP [dm3] X_15607762_SNP [dm6]	C	T	1.462e^-5	0.658	NON_SYNONYMOUS_CODING sog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11534766	3L_11534766_SNP [dm3] 3L_11541666_SNP [dm6]	G	A	1.465e^-5	0.658	INTRON Mob2
2R	15262336	2R_15262336_SNP [dm3] 2R_19374831_SNP [dm6]	G	A	1.504e^-5	0.658	UPSTREAM CG10062 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	19570970	2R_19570970_SNP [dm3] 2R_23683447_SNP [dm6]	T	C	1.509e^-5	0.658	SYNONYMOUS_CODING St3 DOWNSTREAM St1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	18343882	2R_18343882_SNP [dm3] 2R_22456377_SNP [dm6]	C	G	1.556e^-5	0.658	INTRON CG10384
2R	17024847	2R_17024847_SNP [dm3] 2R_21137342_SNP [dm6]	G	T	1.607e^-5	0.658	INTRON Magi
X	9342909	X_9342909_SNP [dm3] X_9448876_SNP [dm6]	T	C	1.685e^-5	0.658	INTRON mgl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
X	7255572	X_7255572_SNP [dm3] X_7361539_SNP [dm6]	C	A	1.738e^-5	0.658	INTRON CG1677 & 1 other	TF binding site mE1_TFBS_Kr
2L	2607542	2L_2607542_SNP [dm3] 2L_2607542_SNP [dm6]	G	A	1.789e^-5	0.658	INTERGENIC
2L	1041148	2L_1041148_SNP [dm3] 2L_1041148_SNP [dm6]	G	A	1.790e^-5	0.658	INTRON IA-2
2R	15262230	2R_15262230_DEL [dm3] 2R_19374725_DEL [dm6]	GCG	G	1.797e^-5	0.658	UPSTREAM CG10062 INTERGENIC	TF binding site mE1_TFBS_inv
X	14763147	X_14763147_SNP [dm3] X_14869114_SNP [dm6]	T	C	1.798e^-5	0.658	INTRON Flo2 & 1 other
X	5680229	X_5680229_SNP [dm3] X_5786196_SNP [dm6]	T	A	1.814e^-5	0.658	INTRON CG42699	TF binding site mE1_TFBS_chinmo
2R	18316084	2R_18316084_SNP [dm3] 2R_22428579_SNP [dm6]	T	C	1.826e^-5	0.658	INTRON ppk12
2R	19591967	2R_19591967_SNP [dm3] 2R_23704444_SNP [dm6]	C	T	1.889e^-5	0.658	SYNONYMOUS_CODING l_2_dtl DOWNSTREAM l_2_not	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14763121	X_14763121_SNP [dm3] X_14869088_SNP [dm6]	C	T	1.903e^-5	0.658	INTRON Flo2 & 1 other
2R	16247135	2R_16247135_SNP [dm3] 2R_20359630_SNP [dm6]	G	A	1.975e^-5	0.658	INTERGENIC
3L	5309749	3L_5309749_SNP [dm3] 3L_5316649_SNP [dm6]	T	C	2.033e^-5	0.658	UPSTREAM CR45741 INTERGENIC
2R	19602165	2R_19602165_SNP [dm3] 2R_23714642_SNP [dm6]	C	T	2.057e^-5	0.658	INTRON Sesn
3L	12862127	3L_12862127_DEL [dm3] 3L_12869027_DEL [dm6]	TC	T	2.088e^-5	0.658	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18084905	2R_18084905_SNP [dm3] 2R_22197400_SNP [dm6]	C	T	2.149e^-5	0.658	UPSTREAM snoRNA:Or-CD1 INTRON Swim	TF binding site BDTNP1_TFBS_dl
X	16594650	X_16594650_SNP [dm3] X_16700617_SNP [dm6]	A	G	2.159e^-5	0.658	UTR_3_PRIME spheroide UPSTREAM CG9676 INTRON CG4678
X	6704060	X_6704060_SNP [dm3] X_6810027_SNP [dm6]	C	A	2.243e^-5	0.658	SYNONYMOUS_CODING pod1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11392357	3R_11392357_SNP [dm3] 3R_15566635_SNP [dm6]	A	T	2.262e^-5	0.658	INTERGENIC
2R	16937757	2R_16937757_SNP [dm3] 2R_21050252_SNP [dm6]	A	T	2.290e^-5	0.658	UTR_3_PRIME shg	TF binding site BDTNP1_TFBS_dl
3L	5890694	3L_5890694_SNP [dm3] 3L_5897594_SNP [dm6]	G	T	2.294e^-5	0.658	UPSTREAM CG5592 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	12363439	3R_12363439_SNP [dm3] 3R_16537717_SNP [dm6]	A	G	2.300e^-5	0.658	INTRON CG42342
2L	21906643	2L_21906643_SNP [dm3] 2L_21906643_SNP [dm6]	C	T	2.309e^-5	0.658	SYNONYMOUS_CODING CG1428	TF binding site mE1_TFBS_cad
X	5694093	X_5694093_SNP [dm3] X_5800060_SNP [dm6]	A	G	2.352e^-5	0.658	INTERGENIC
2R	19612129	2R_19612129_SNP [dm3] 2R_23724606_SNP [dm6]	T	A	2.436e^-5	0.658	INTRON Sesn
2L	11865260	2L_11865260_SNP [dm3] 2L_11865260_SNP [dm6]	C	T	2.452e^-5	0.658	INTRON Pde1c
2L	20508888	2L_20508888_SNP [dm3] 2L_20508888_SNP [dm6]	A	G	2.454e^-5	0.658	INTERGENIC
2R	18084911	2R_18084911_SNP [dm3] 2R_22197406_SNP [dm6]	G	A	2.499e^-5	0.658	UPSTREAM snoRNA:Or-CD1 INTRON Swim	TF binding site BDTNP1_TFBS_dl
2R	11213150	2R_11213150_SNP [dm3] 2R_15325645_SNP [dm6]	G	A	2.570e^-5	0.658	UTR_3_PRIME CG8157 DOWNSTREAM Arf51F & 1 other	TF binding site BDTNP1_TFBS_dl
3R	27145838	3R_27145838_SNP [dm3] 3R_31320116_SNP [dm6]	G	A	2.606e^-5	0.658	INTRON CG34347
X	14763129	X_14763129_DEL [dm3] X_14869096_DEL [dm6]	AA	A	2.607e^-5	0.658	INTRON Flo2 & 1 other
3R	11392269	3R_11392269_SNP [dm3] 3R_15566547_SNP [dm6]	A	T	2.689e^-5	0.658	INTERGENIC
3R	11392300	3R_11392300_SNP [dm3] 3R_15566578_SNP [dm6]	C	A	2.689e^-5	0.658	INTERGENIC
3R	11392363	3R_11392363_SNP [dm3] 3R_15566641_SNP [dm6]	T	C	2.689e^-5	0.658	INTERGENIC
2R	11715975	2R_11715975_SNP [dm3] 2R_15828470_SNP [dm6]	C	T	2.706e^-5	0.658	INTRON tun & 1 other
2L	12298969	2L_12298969_SNP [dm3] 2L_12298969_SNP [dm6]	G	A	2.726e^-5	0.658	SYNONYMOUS_CODING aret	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	418716	3L_418716_SNP [dm3] 3L_418716_SNP [dm6]	C	G	2.740e^-5	0.658	INTERGENIC
2R	18316068	2R_18316068_SNP [dm3] 2R_22428563_SNP [dm6]	A	T	2.748e^-5	0.658	INTRON ppk12
2R	19588037	2R_19588037_SNP [dm3] 2R_23700514_SNP [dm6]	T	G	2.775e^-5	0.658	SYNONYMOUS_CODING CG4091
X	5694101	X_5694101_SNP [dm3] X_5800068_SNP [dm6]	A	C	2.788e^-5	0.658	INTERGENIC
2R	17457026	2R_17457026_SNP [dm3] 2R_21569521_SNP [dm6]	T	A	2.829e^-5	0.658	INTRON CG10440	TF binding site mE1_TFBS_HSA
3R	11392264	3R_11392264_SNP [dm3] 3R_15566542_SNP [dm6]	G	A	2.834e^-5	0.658	INTERGENIC
3R	18622387	3R_18622387_SNP [dm3] 3R_22796665_SNP [dm6]	A	T	2.848e^-5	0.658	INTERGENIC
3R	12352727	3R_12352727_SNP [dm3] 3R_16527005_SNP [dm6]	C	T	2.924e^-5	0.658	INTRON CG42342	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	22211439	3R_22211439_SNP [dm3] 3R_26385717_SNP [dm6]	T	C	2.949e^-5	0.658	INTERGENIC
3R	22211453	3R_22211453_SNP [dm3] 3R_26385731_SNP [dm6]	C	G	2.949e^-5	0.658	INTERGENIC
X	13062814	X_13062814_SNP [dm3] X_13168781_SNP [dm6]	G	A	3.014e^-5	0.663	INTRON CG34411
X	16592973	X_16592973_SNP [dm3] X_16698940_SNP [dm6]	G	A	3.072e^-5	0.663	DOWNSTREAM CG9676 INTRON CG4678
2R	15262223	2R_15262223_SNP [dm3] 2R_19374718_SNP [dm6]	A	G	3.106e^-5	0.663	UPSTREAM CG10062 INTERGENIC	TF binding site mE1_TFBS_inv
3R	9283153	3R_9283153_SNP [dm3] 3R_13457431_SNP [dm6]	G	A	3.147e^-5	0.663	INTRON CR17025 & 1 other
2L	9522681	2L_9522681_SNP [dm3] 2L_9522681_SNP [dm6]	C	T	3.147e^-5	0.663	INTRON Oatp30B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	24796524	3R_24796524_SNP [dm3] 3R_28970802_SNP [dm6]	T	G	3.199e^-5	0.664	UPSTREAM CG14521 EXON CR45669
3R	18926949	3R_18926949_SNP [dm3] 3R_23101227_SNP [dm6]	A	G	3.220e^-5	0.664	DOWNSTREAM CG6738 INTRON CG13830
2R	9477824	2R_9477824_SNP [dm3] 2R_13590319_SNP [dm6]	A	G	3.257e^-5	0.664	INTRON CG6191 & 1 other
2R	10912555	2R_10912555_SNP [dm3] 2R_15025050_SNP [dm6]	T	C	3.312e^-5	0.666	UPSTREAM CR45256 & 1 other INTRON hbs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17853143	2R_17853143_SNP [dm3] 2R_21965638_SNP [dm6]	G	A	3.362e^-5	0.666	INTRON ppk9
2L	20508890	2L_20508890_SNP [dm3] 2L_20508890_SNP [dm6]	A	G	3.372e^-5	0.666	INTERGENIC
3R	11392277	3R_11392277_SNP [dm3] 3R_15566555_SNP [dm6]	T	A	3.477e^-5	0.672	INTERGENIC
3R	11546840	3R_11546840_SNP [dm3] 3R_15721118_SNP [dm6]	T	C	3.501e^-5	0.672	INTERGENIC
3L	5890698	3L_5890698_SNP [dm3] 3L_5897598_SNP [dm6]	T	C	3.511e^-5	0.672	UPSTREAM CG5592 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	18926946	3R_18926946_SNP [dm3] 3R_23101224_SNP [dm6]	C	A	3.740e^-5	0.703	DOWNSTREAM CG6738 INTRON CG13830
2L	4294293	2L_4294293_SNP [dm3] 2L_4294293_SNP [dm6]	A	T	3.750e^-5	0.703	INTRON tutl
3R	5706767	3R_5706767_SNP [dm3] 3R_9881045_SNP [dm6]	T	C	3.917e^-5	0.714	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	8845900	2L_8845900_SNP [dm3] 2L_8845900_SNP [dm6]	A	T	3.947e^-5	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	18925919	3R_18925919_SNP [dm3] 3R_23100197_SNP [dm6]	G	A	3.977e^-5	0.714	SYNONYMOUS_CODING CG6738 INTRON CG13830
3R	18926742	3R_18926742_SNP [dm3] 3R_23101020_SNP [dm6]	G	A	3.995e^-5	0.714	DOWNSTREAM CG6738 INTRON CG13830
X	13508591	X_13508591_SNP [dm3] X_13614558_SNP [dm6]	A	T	4.034e^-5	0.714	SYNONYMOUS_CODING tth	TF binding site mE1_TFBS_chinmo
2R	17025942	2R_17025942_SNP [dm3] 2R_21138437_SNP [dm6]	A	G	4.038e^-5	0.714	SYNONYMOUS_CODING Magi	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13343525	2L_13343525_SNP [dm3] 2L_13343525_SNP [dm6]	T	G	4.246e^-5	0.731	INTERGENIC
2L	7559819	2L_7559819_SNP [dm3] 2L_7559819_SNP [dm6]	A	T	4.280e^-5	0.731	INTRON RapGAP1
2L	16189285	2L_16189285_SNP [dm3] 2L_16189285_SNP [dm6]	G	A	4.333e^-5	0.731	SYNONYMOUS_CODING Ca-alpha1D UTR_3_PRIME Ca-alpha1D
2R	8438620	2R_8438620_SNP [dm3] 2R_12551115_SNP [dm6]	T	C	4.424e^-5	0.731	INTRON fra	TF binding site mE1_TFBS_inv
X	15956610	X_15956610_SNP [dm3] X_16062577_SNP [dm6]	C	G	4.433e^-5	0.731	SYNONYMOUS_CODING CG12395 DOWNSTREAM Muc14A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	9283024	3R_9283024_SNP [dm3] 3R_13457302_SNP [dm6]	T	G	4.438e^-5	0.731	INTRON CR17025 & 1 other
3R	18253515	3R_18253515_SNP [dm3] 3R_22427793_SNP [dm6]	C	T	4.472e^-5	0.731	SYNONYMOUS_CODING CG13847
X	10116306	X_10116306_SNP [dm3] X_10222273_SNP [dm6]	C	T	4.549e^-5	0.731	UPSTREAM CG34408 INTRON CG34408
2L	4294261	2L_4294261_SNP [dm3] 2L_4294261_SNP [dm6]	C	T	4.578e^-5	0.731	INTRON tutl
2L	11865224	2L_11865224_SNP [dm3] 2L_11865224_SNP [dm6]	C	G	4.617e^-5	0.731	INTRON Pde1c
2L	7573126	2L_7573126_SNP [dm3] 2L_7573126_SNP [dm6]	G	T	4.647e^-5	0.731	INTRON RapGAP1
2R	17853133	2R_17853133_SNP [dm3] 2R_21965628_SNP [dm6]	G	T	4.777e^-5	0.731	INTRON ppk9
X	20914958	X_20914958_SNP [dm3] X_21043931_SNP [dm6]	T	A	4.796e^-5	0.731	SYNONYMOUS_CODING Mgstl EXON CR44431
X	16668053	X_16668053_SNP [dm3] X_16774020_SNP [dm6]	A	G	4.797e^-5	0.731	INTRON if	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11978614	3L_11978614_SNP [dm3] 3L_11985514_SNP [dm6]	A	T	4.797e^-5	0.731	INTRON CG6938
2L	12576980	2L_12576980_SNP [dm3] 2L_12576980_SNP [dm6]	A	G	4.807e^-5	0.731	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24800392	3R_24800392_SNP [dm3] 3R_28974670_SNP [dm6]	G	T	4.997e^-5	0.731	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	16668055	X_16668055_SNP [dm3] X_16774022_SNP [dm6]	A	G	5.004e^-5	0.731	INTRON if	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19572388	2R_19572388_SNP [dm3] 2R_23684865_SNP [dm6]	T	G	5.027e^-5	0.731	SYNONYMOUS_CODING l_2_efl DOWNSTREAM St3 INTRON St3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	13627316	X_13627316_SNP [dm3] X_13733283_SNP [dm6]	G	A	5.065e^-5	0.731	INTRON g
2R	11213167	2R_11213167_SNP [dm3] 2R_15325662_SNP [dm6]	G	A	5.069e^-5	0.731	UTR_3_PRIME CG8157 DOWNSTREAM Arf51F & 1 other
X	16592978	X_16592978_SNP [dm3] X_16698945_SNP [dm6]	T	A	5.069e^-5	0.731	DOWNSTREAM CG9676 INTRON CG4678
2R	20348208	2R_20348208_SNP [dm3] 2R_24460685_SNP [dm6]	T	C	5.109e^-5	0.731	INTRON CG13579
2R	13936410	2R_13936410_SNP [dm3] 2R_18048905_SNP [dm6]	T	A	5.114e^-5	0.731	UTR_3_PRIME CG34005 & 1 other DOWNSTREAM CG14495 & 1 other	TF binding site mE1_TFBS_bab1
2L	7576477	2L_7576477_SNP [dm3] 2L_7576477_SNP [dm6]	T	G	5.163e^-5	0.731	UTR_5_PRIME RapGAP1 UPSTREAM RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9771681	3L_9771681_SNP [dm3] 3L_9778581_SNP [dm6]	G	A	5.164e^-5	0.731	INTRON CG8177	TF binding site mE1_TFBS_inv
2R	17854809	2R_17854809_SNP [dm3] 2R_21967304_SNP [dm6]	T	G	5.184e^-5	0.731	INTRON ppk9
3R	18584077	3R_18584077_SNP [dm3] 3R_22758355_SNP [dm6]	T	C	5.334e^-5	0.744	DOWNSTREAM CG4725 INTRON Usp12-46 & 1 other
3R	12624468	3R_12624468_SNP [dm3] 3R_16798746_SNP [dm6]	A	T	5.364e^-5	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_zfh1
X	6198933	X_6198933_SNP [dm3] X_6304900_SNP [dm6]	A	G	5.480e^-5	0.744	INTRON CG3823	TF binding site mE1_TFBS_HSA
X	8256700	X_8256700_DEL [dm3] X_8362667_DEL [dm6]	TAA	G	5.514e^-5	0.744	INTRON nAChRalpha3
3R	13754729	3R_13754729_SNP [dm3] 3R_17929007_SNP [dm6]	T	C	5.587e^-5	0.744	INTRON cpo	TF binding site mE1_TFBS_inv
2R	19583351	2R_19583351_SNP [dm3] 2R_23695828_SNP [dm6]	T	C	5.658e^-5	0.744	NON_SYNONYMOUS_CODING CG30183 DOWNSTREAM angel	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	15905949	X_15905949_SNP [dm3] X_16011916_SNP [dm6]	A	G	5.694e^-5	0.744	SYNONYMOUS_CODING Muc14A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8949765	3R_8949765_SNP [dm3] 3R_13124043_SNP [dm6]	G	A	5.728e^-5	0.744	UTR_3_PRIME 2mit DOWNSTREAM 2mit INTRON timeout
3R	18704281	3R_18704281_DEL [dm3] 3R_22878559_DEL [dm6]	TGTAATTAATGA...	AC	5.773e^-5	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	19595321	2R_19595321_SNP [dm3] 2R_23707798_SNP [dm6]	T	C	5.828e^-5	0.744	SYNONYMOUS_CODING l_2_tid INTRON l_2_not	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14130355	2L_14130355_DEL [dm3] 2L_14130355_DEL [dm6]	TCAACA	T	5.844e^-5	0.744	INTERGENIC
3R	25024538	3R_25024538_SNP [dm3] 3R_29198816_SNP [dm6]	G	A	6.036e^-5	0.744	INTRON CG14515
2R	17854192	2R_17854192_SNP [dm3] 2R_21966687_SNP [dm6]	T	C	6.532e^-5	0.744	INTRON ppk9
2R	16840829	2R_16840829_SNP [dm3] 2R_20953324_SNP [dm6]	C	G	6.540e^-5	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14152035	X_14152035_SNP [dm3] X_14258002_SNP [dm6]	A	G	6.641e^-5	0.744	SYNONYMOUS_CODING mud UTR_3_PRIME mud INTRON mud	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12353267	2R_12353267_SNP [dm3] 2R_16465762_SNP [dm6]	G	C	6.753e^-5	0.744	UPSTREAM CheB53a INTERGENIC
3R	13751616	3R_13751616_SNP [dm3] 3R_17925894_SNP [dm6]	A	T	6.775e^-5	0.744	INTRON cpo	TF binding site mE1_TFBS_Trl
3R	8447979	3R_8447979_SNP [dm3] 3R_12622257_SNP [dm6]	G	C	6.785e^-5	0.744	INTERGENIC
2R	19574390	2R_19574390_SNP [dm3] 2R_23686867_SNP [dm6]	G	A	6.825e^-5	0.744	NON_SYNONYMOUS_CODING St3	TF binding site mE1_TFBS_cad
2R	17853675	2R_17853675_DEL [dm3] 2R_21966170_DEL [dm6]	CC	C	6.837e^-5	0.744	INTRON ppk9
2R	9083141	2R_9083141_DEL [dm3] 2R_13195636_DEL [dm6]	ATATTTTTCTT...	A	6.866e^-5	0.744	INTRON Kdm4B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17147191	2R_17147191_INS [dm3] 2R_21259686_INS [dm6]	A	AGC	6.870e^-5	0.744	INTRON Rgk3
2R	19602499	2R_19602499_SNP [dm3] 2R_23714976_SNP [dm6]	C	A	6.896e^-5	0.744	INTRON Sesn
2L	844605	2L_844605_SNP [dm3] 2L_844605_SNP [dm6]	C	T	6.914e^-5	0.744	INTRON drongo
2L	8845898	2L_8845898_SNP [dm3] 2L_8845898_SNP [dm6]	G	A	7.034e^-5	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6362194	2L_6362194_SNP [dm3] 2L_6362194_SNP [dm6]	C	T	7.198e^-5	0.744	DOWNSTREAM CR44778 INTERGENIC
2L	4166210	2L_4166210_SNP [dm3] 2L_4166210_SNP [dm6]	C	A	7.211e^-5	0.744	UPSTREAM Or24a INTERGENIC
2R	18316086	2R_18316086_SNP [dm3] 2R_22428581_SNP [dm6]	A	C	7.237e^-5	0.744	INTRON ppk12
2R	10912554	2R_10912554_SNP [dm3] 2R_15025049_SNP [dm6]	G	A	7.290e^-5	0.744	UPSTREAM CR45256 & 1 other INTRON hbs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17103305	2R_17103305_SNP [dm3] 2R_21215800_SNP [dm6]	C	A	7.363e^-5	0.744	NON_SYNONYMOUS_CODING CG15661 UPSTREAM CG4302
3L	1412361	3L_1412361_SNP [dm3] 3L_1412361_SNP [dm6]	C	T	7.418e^-5	0.744	SYNONYMOUS_CODING CG9168 INTRON Ptp61F
2L	20974224	2L_20974224_SNP [dm3] 2L_20974224_SNP [dm6]	A	G	7.421e^-5	0.744	INTRON CG42238
2L	8739042	2L_8739042_SNP [dm3] 2L_8739042_SNP [dm6]	T	G	7.432e^-5	0.744	INTRON raw
X	712212	X_712212_SNP [dm3] X_818179_SNP [dm6]	C	T	7.590e^-5	0.744	INTRON CG43867
2R	18057533	2R_18057533_SNP [dm3] 2R_22170028_SNP [dm6]	A	C	7.604e^-5	0.744	SYNONYMOUS_CODING a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9660966	X_9660966_SNP [dm3] X_9766933_SNP [dm6]	T	C	7.613e^-5	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	19595585	2R_19595585_SNP [dm3] 2R_23708062_SNP [dm6]	T	C	7.716e^-5	0.744	SYNONYMOUS_CODING l_2_tid INTRON l_2_not	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9147038	2R_9147038_SNP [dm3] 2R_13259533_SNP [dm6]	G	A	7.754e^-5	0.744	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
X	8256670	X_8256670_SNP [dm3] X_8362637_SNP [dm6]	A	G	7.761e^-5	0.744	INTRON nAChRalpha3
2R	19583141	2R_19583141_SNP [dm3] 2R_23695618_SNP [dm6]	G	A	7.768e^-5	0.744	SYNONYMOUS_CODING CG30183 DOWNSTREAM angel	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7805467	2L_7805467_SNP [dm3] 2L_7805467_SNP [dm6]	A	G	7.793e^-5	0.744	SYNONYMOUS_CODING cdc14	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	13676329	X_13676329_SNP [dm3] X_13782296_SNP [dm6]	C	A	7.807e^-5	0.744	UPSTREAM CG11103 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11138341	2L_11138341_SNP [dm3] 2L_11138341_SNP [dm6]	C	T	7.841e^-5	0.744	DOWNSTREAM Gyc32E INTRON hgo
2L	4025634	2L_4025634_SNP [dm3] 2L_4025634_SNP [dm6]	A	G	7.889e^-5	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	714312	X_714312_DEL [dm3] X_820279_DEL [dm6]	ACTGTATAATACTAAAACTT...	A	7.937e^-5	0.744	INTRON CG43867
2R	2968095	2R_2968095_SNP [dm3] 2R_7080590_SNP [dm6]	A	G	8.001e^-5	0.744	INTERGENIC
3R	18926942	3R_18926942_SNP [dm3] 3R_23101220_SNP [dm6]	T	G	8.006e^-5	0.744	DOWNSTREAM CG6738 INTRON CG13830
3L	4698283	3L_4698283_SNP [dm3] 3L_4698283_SNP [dm6]	C	T	8.071e^-5	0.744	DOWNSTREAM CG13713 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18455305	2R_18455305_SNP [dm3] 2R_22567800_SNP [dm6]	A	T	8.073e^-5	0.744	INTRON dnr1
2L	7576913	2L_7576913_SNP [dm3] 2L_7576913_SNP [dm6]	A	C	8.126e^-5	0.744	UPSTREAM RapGAP1 INTRON RapGAP1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	15775342	2L_15775342_SNP [dm3] 2L_15775342_SNP [dm6]	G	A	8.140e^-5	0.744	INTERGENIC
2L	11138307	2L_11138307_SNP [dm3] 2L_11138307_SNP [dm6]	C	G	8.147e^-5	0.744	DOWNSTREAM Gyc32E INTRON hgo
2R	17992360	2R_17992360_SNP [dm3] 2R_22104855_SNP [dm6]	T	C	8.154e^-5	0.744	SYNONYMOUS_CODING CG6613
2L	2564829	2L_2564829_SNP [dm3] 2L_2564829_SNP [dm6]	G	T	8.159e^-5	0.744	UTR_5_PRIME Cyp309a1 DOWNSTREAM Cyp309a2
2R	19594464	2R_19594464_SNP [dm3] 2R_23706941_SNP [dm6]	T	A	8.166e^-5	0.744	UTR_5_PRIME l_2_tid UPSTREAM l_2_tid INTRON l_2_not	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5706763	3R_5706763_SNP [dm3] 3R_9881041_SNP [dm6]	T	A	8.209e^-5	0.744	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19592411	2R_19592411_SNP [dm3] 2R_23704888_SNP [dm6]	T	C	8.222e^-5	0.744	SYNONYMOUS_CODING l_2_dtl DOWNSTREAM l_2_not	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19595606	2R_19595606_SNP [dm3] 2R_23708083_SNP [dm6]	A	C	8.257e^-5	0.744	SYNONYMOUS_CODING l_2_tid INTRON l_2_not	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18926964	3R_18926964_SNP [dm3] 3R_23101242_SNP [dm6]	G	A	8.259e^-5	0.744	DOWNSTREAM CG6738 INTRON CG13830
2L	9196999	2L_9196999_SNP [dm3] 2L_9196999_SNP [dm6]	C	G	8.296e^-5	0.744	INTRON tai
3R	24903144	3R_24903144_SNP [dm3] 3R_29077422_SNP [dm6]	C	T	8.445e^-5	0.744	INTRON CG11873
3R	17925922	3R_17925922_SNP [dm3] 3R_22100200_SNP [dm6]	A	G	8.482e^-5	0.744	INTRON CG5778
2R	10544257	2R_10544257_SNP [dm3] 2R_14656752_SNP [dm6]	A	C	8.561e^-5	0.744	DOWNSTREAM Adgf-E INTERGENIC
2R	19601440	2R_19601440_SNP [dm3] 2R_23713917_SNP [dm6]	C	T	8.672e^-5	0.744	START_GAINED Sesn UTR_5_PRIME Sesn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	5699407	X_5699407_SNP [dm3] X_5805374_SNP [dm6]	A	T	8.686e^-5	0.744	DOWNSTREAM Cpr5C INTERGENIC
3L	3643598	3L_3643598_SNP [dm3] 3L_3643598_SNP [dm6]	T	C	8.736e^-5	0.744	INTRON dar1
2R	15508746	2R_15508746_SNP [dm3] 2R_19621241_SNP [dm6]	T	A	8.759e^-5	0.744	INTRON sm
2R	19585677	2R_19585677_SNP [dm3] 2R_23698154_SNP [dm6]	A	G	8.772e^-5	0.744	START_GAINED mRpL43 UTR_5_PRIME mRpL43 UPSTREAM CG30183 DOWNSTREAM CG4091	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	5827446	2L_5827446_SNP [dm3] 2L_5827446_SNP [dm6]	C	T	8.814e^-5	0.744	INTRON TrissinR
2R	12136505	2R_12136505_SNP [dm3] 2R_16249000_SNP [dm6]	T	A	8.826e^-5	0.744	INTRON CngA
3L	14544905	3L_14544905_SNP [dm3] 3L_14551805_SNP [dm6]	C	T	8.844e^-5	0.744	UPSTREAM CG9238 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	13194341	X_13194341_SNP [dm3] X_13300308_SNP [dm6]	C	T	8.877e^-5	0.744	DOWNSTREAM CG1622 INTRON CG1764
2R	19584707	2R_19584707_SNP [dm3] 2R_23697184_SNP [dm6]	T	C	9.046e^-5	0.744	UPSTREAM mRpL43 INTRON CG30183	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	11169074	3L_11169074_SNP [dm3] 3L_11175974_SNP [dm6]	T	A	9.048e^-5	0.744	UTR_3_PRIME CG14142 DOWNSTREAM GlcAT-P	TF binding site mE1_TFBS_cad
2R	17445957	2R_17445957_SNP [dm3] 2R_21558452_SNP [dm6]	C	T	9.053e^-5	0.744	SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24951387	3R_24951387_SNP [dm3] 3R_29125665_SNP [dm6]	A	G	9.078e^-5	0.744	SYNONYMOUS_CODING CG11880	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	17831037	2R_17831037_SNP [dm3] 2R_21943532_SNP [dm6]	G	T	9.103e^-5	0.744	NON_SYNONYMOUS_CODING Fili	TF binding site mE1_TFBS_chinmo
X	5907899	X_5907899_SNP [dm3] X_6013866_SNP [dm6]	T	A	9.123e^-5	0.744	UPSTREAM mab-21 INTRON CR44499	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	12986961	3R_12986961_SNP [dm3] 3R_17161239_SNP [dm6]	T	A	9.187e^-5	0.744	INTRON Mur89F
3R	21541517	3R_21541517_SNP [dm3] 3R_25715795_SNP [dm6]	A	G	9.227e^-5	0.744	INTRON LpR2
3L	18935559	3L_18935559_SNP [dm3] 3L_18942459_SNP [dm6]	C	T	9.326e^-5	0.744	INTRON CG32204
2R	3307269	2R_3307269_SNP [dm3] 2R_7419764_SNP [dm6]	G	A	9.330e^-5	0.744	UTR_5_PRIME so	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	844611	2L_844611_SNP [dm3] 2L_844611_SNP [dm6]	C	T	9.371e^-5	0.744	INTRON drongo
3R	24833147	3R_24833147_SNP [dm3] 3R_29007425_SNP [dm6]	T	A	9.390e^-5	0.744	INTRON wat
2L	6212690	2L_6212690_SNP [dm3] 2L_6212690_SNP [dm6]	T	A	9.409e^-5	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16454098	3L_16454098_SNP [dm3] 3L_16460998_SNP [dm6]	G	T	9.410e^-5	0.744	INTRON CG33158
X	16592071	X_16592071_SNP [dm3] X_16698038_SNP [dm6]	G	T	9.445e^-5	0.744	INTRON CG4678
2R	11757029	2R_11757029_SNP [dm3] 2R_15869524_SNP [dm6]	G	A	9.451e^-5	0.744	UTR_3_PRIME sli UPSTREAM Rif1 DOWNSTREAM sli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	8043979	X_8043979_SNP [dm3] X_8149946_SNP [dm6]	G	A	9.454e^-5	0.744	SYNONYMOUS_CODING CG10959 DOWNSTREAM Gbeta5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	11821669	X_11821669_SNP [dm3] X_11927636_SNP [dm6]	G	A	9.547e^-5	0.744	SYNONYMOUS_CODING CG10362
2R	17103304	2R_17103304_SNP [dm3] 2R_21215799_SNP [dm6]	A	G	9.556e^-5	0.744	NON_SYNONYMOUS_CODING CG15661 UPSTREAM CG4302
3R	23745619	3R_23745619_DEL [dm3] 3R_27919897_DEL [dm6]	CAGAAACTGC	C	9.558e^-5	0.744	UTR_3_PRIME CG12259 UPSTREAM CG33213	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	27213306	3R_27213306_SNP [dm3] 3R_31387584_SNP [dm6]	C	T	9.558e^-5	0.744	INTRON CG1607	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	11212768	2R_11212768_SNP [dm3] 2R_15325263_SNP [dm6]	A	G	9.574e^-5	0.744	UTR_3_PRIME Arf51F DOWNSTREAM CG8157 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7790795	2L_7790795_DEL [dm3] 2L_7790795_DEL [dm6]	AA	A	9.682e^-5	0.744	UPSTREAM CG7149 DOWNSTREAM LKR INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15281634	2L_15281634_SNP [dm3] 2L_15281634_SNP [dm6]	C	A	9.683e^-5	0.744	INTERGENIC
2L	9196140	2L_9196140_SNP [dm3] 2L_9196140_SNP [dm6]	T	C	9.696e^-5	0.744	INTRON tai
2R	17577299	2R_17577299_SNP [dm3] 2R_21689794_SNP [dm6]	T	C	9.852e^-5	0.744	SYNONYMOUS_CODING CG10307 DOWNSTREAM Tim10 & 1 other	TF binding site mE1_TFBS_inv mE1_TFBS_sens
X	13194334	X_13194334_SNP [dm3] X_13300301_SNP [dm6]	C	T	9.907e^-5	0.744	DOWNSTREAM CG1622 INTRON CG1764
2R	13873035	2R_13873035_SNP [dm3] 2R_17985530_SNP [dm6]	A	G	9.912e^-5	0.744	INTRON dpr13
2L	11866286	2L_11866286_SNP [dm3] 2L_11866286_SNP [dm6]	T	A	9.924e^-5	0.744	INTRON Pde1c
2R	18427205	2R_18427205_SNP [dm3] 2R_22539700_SNP [dm6]	C	T	9.977e^-5	0.744	INTRON px
3R	22594742	3R_22594742_SNP [dm3] 3R_26769020_SNP [dm6]	C	G	1.005e^-4	0.744	UPSTREAM CR45563 INTERGENIC
2R	6450802	2R_6450802_DEL [dm3] 2R_10563297_DEL [dm6]	AAAGATTTATTTTACTAAAT...	A	1.009e^-4	0.744	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	18647078	2R_18647078_SNP [dm3] 2R_22759573_SNP [dm6]	T	A	1.012e^-4	0.744	DOWNSTREAM CR30267 INTRON CG42260
2L	3273784	2L_3273784_SNP [dm3] 2L_3273784_SNP [dm6]	C	G	1.022e^-4	0.744	INTERGENIC
X	8833222	X_8833222_SNP [dm3] X_8939189_SNP [dm6]	G	T	1.029e^-4	0.744	INTRON rdgA	TF binding site mE1_TFBS_HSA
3L	3567935	3L_3567935_SNP [dm3] 3L_3567935_SNP [dm6]	C	T	1.038e^-4	0.744	INTRON Eip63E	TF binding site mE1_TFBS_bab1
2L	12296763	2L_12296763_DEL [dm3] 2L_12296763_DEL [dm6]	GCCG	G	1.039e^-4	0.744	INTRON aret
3L	12591074	3L_12591074_SNP [dm3] 3L_12597974_SNP [dm6]	T	C	1.047e^-4	0.744	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	3291093	2L_3291093_INS [dm3] 2L_3291093_INS [dm6]	T	TATTGTAAAAAA...	1.048e^-4	0.744	DOWNSTREAM CG9664 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	16531964	3R_16531964_SNP [dm3] 3R_20706242_SNP [dm6]	C	G	1.049e^-4	0.744	UTR_5_PRIME Oamb INTRON Oamb
2L	4018282	2L_4018282_SNP [dm3] 2L_4018282_SNP [dm6]	T	C	1.061e^-4	0.744	INTERGENIC
2L	9194541	2L_9194541_SNP [dm3] 2L_9194541_SNP [dm6]	G	C	1.061e^-4	0.744	INTRON tai
3L	8050733	3L_8050733_SNP [dm3] 3L_8057633_SNP [dm6]	A	G	1.062e^-4	0.744	INTRON bip1	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2L	2637794	2L_2637794_SNP [dm3] 2L_2637794_SNP [dm6]	C	T	1.067e^-4	0.744	INTERGENIC
3L	4589776	3L_4589776_SNP [dm3] 3L_4589776_SNP [dm6]	C	T	1.075e^-4	0.744	INTRON CG42540	TF binding site mE1_TFBS_chinmo
X	6435931	X_6435931_SNP [dm3] X_6541898_SNP [dm6]	T	A	1.080e^-4	0.744	INTRON CG34417
X	17072086	X_17072086_SNP [dm3] X_17178053_SNP [dm6]	T	A	1.080e^-4	0.744	UTR_5_PRIME baz INTRON baz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19593618	2R_19593618_SNP [dm3] 2R_23706095_SNP [dm6]	A	G	1.083e^-4	0.744	SYNONYMOUS_CODING l_2_not UPSTREAM l_2_tid DOWNSTREAM l_2_dtl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	393392	3L_393392_SNP [dm3] 3L_393392_SNP [dm6]	C	G	1.084e^-4	0.744	UPSTREAM CR43969 & 2 others INTERGENIC	TF binding site mE1_TFBS_Trl
3R	25038607	3R_25038607_SNP [dm3] 3R_29212885_SNP [dm6]	T	C	1.084e^-4	0.744	INTERGENIC
2L	9196254	2L_9196254_SNP [dm3] 2L_9196254_SNP [dm6]	G	A	1.090e^-4	0.744	INTRON tai
2L	13641064	2L_13641064_SNP [dm3] 2L_13641064_SNP [dm6]	A	G	1.095e^-4	0.744	INTRON ics	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19888472	2R_19888472_SNP [dm3] 2R_24000949_SNP [dm6]	A	T	1.098e^-4	0.744	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19584598	2R_19584598_SNP [dm3] 2R_23697075_SNP [dm6]	C	A	1.099e^-4	0.744	NON_SYNONYMOUS_CODING CG30183	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	8909766	3R_8909766_SNP [dm3] 3R_13084044_SNP [dm6]	T	C	1.101e^-4	0.744	INTERGENIC
2L	16272591	2L_16272591_DEL [dm3] 2L_16272591_DEL [dm6]	AA	A	1.105e^-4	0.744	INTRON crp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15341100	2L_15341100_SNP [dm3] 2L_15341100_SNP [dm6]	T	G	1.106e^-4	0.744	INTERGENIC	TF binding site mE1_TFBS_sens
2L	5545797	2L_5545797_SNP [dm3] 2L_5545797_SNP [dm6]	T	C	1.107e^-4	0.744	UTR_3_PRIME Lam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	3428079	3L_3428079_SNP [dm3] 3L_3428079_SNP [dm6]	T	C	1.112e^-4	0.744	DOWNSTREAM eIF5B INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	5890719	3L_5890719_SNP [dm3] 3L_5897619_SNP [dm6]	A	T	1.121e^-4	0.744	UPSTREAM CG5592 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	14863304	X_14863304_SNP [dm3] X_14969271_SNP [dm6]	A	T	1.129e^-4	0.744	INTRON eag
2L	7239477	2L_7239477_SNP [dm3] 2L_7239477_SNP [dm6]	G	A	1.132e^-4	0.744	INTRON Ndae1
2L	15826750	2L_15826750_SNP [dm3] 2L_15826750_SNP [dm6]	T	C	1.133e^-4	0.744	INTERGENIC
2R	12383789	2R_12383789_SNP [dm3] 2R_16496284_SNP [dm6]	G	T	1.136e^-4	0.744	DOWNSTREAM CG7813 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6463804	3L_6463804_SNP [dm3] 3L_6470704_SNP [dm6]	C	A	1.137e^-4	0.744	INTRON CG42747
2L	5337306	2L_5337306_SNP [dm3] 2L_5337306_SNP [dm6]	A	C	1.148e^-4	0.744	INTRON fusl
3L	5279638	3L_5279638_DEL [dm3] 3L_5286538_DEL [dm6]	TG	A	1.149e^-4	0.744	INTERGENIC
X	17375240	X_17375240_SNP [dm3] X_17481207_SNP [dm6]	C	A	1.159e^-4	0.744	INTRON CG43658
2L	5445375	2L_5445375_SNP [dm3] 2L_5445375_SNP [dm6]	G	C	1.166e^-4	0.744	INTERGENIC
3R	24917344	3R_24917344_SNP [dm3] 3R_29091622_SNP [dm6]	A	G	1.173e^-4	0.744	INTRON CG11873	TF binding site BDTNP1_TFBS_da
X	16634735	X_16634735_SNP [dm3] X_16740702_SNP [dm6]	T	A	1.179e^-4	0.744	UPSTREAM CG32568 INTRON CG9634
2R	6935269	2R_6935269_SNP [dm3] 2R_11047764_SNP [dm6]	T	C	1.179e^-4	0.744	INTRON luna
2R	19583972	2R_19583972_SNP [dm3] 2R_23696449_SNP [dm6]	G	A	1.180e^-4	0.744	SYNONYMOUS_CODING CG30183	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12627214	2R_12627214_SNP [dm3] 2R_16739709_SNP [dm6]	A	T	1.184e^-4	0.744	INTERGENIC
2L	3272385	2L_3272385_SNP [dm3] 2L_3272385_SNP [dm6]	T	A	1.186e^-4	0.744	DOWNSTREAM CG3347 INTERGENIC
2R	6154499	2R_6154499_SNP [dm3] 2R_10266994_SNP [dm6]	C	T	1.189e^-4	0.744	SYNONYMOUS_CODING CG12910 INTRON CG12910	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	14874971	X_14874971_SNP [dm3] X_14980938_SNP [dm6]	C	T	1.191e^-4	0.744	INTRON eag
X	10253508	X_10253508_SNP [dm3] X_10359475_SNP [dm6]	C	T	1.192e^-4	0.744	SYNONYMOUS_CODING l_1_G0289	TF binding site mE1_TFBS_chinmo
2L	6998719	2L_6998719_SNP [dm3] 2L_6998719_SNP [dm6]	C	T	1.193e^-4	0.744	INTRON uif	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
2R	17720189	2R_17720189_SNP [dm3] 2R_21832684_SNP [dm6]	G	T	1.194e^-4	0.744	SYNONYMOUS_CODING CG34040
2R	6345615	2R_6345615_SNP [dm3] 2R_10458110_SNP [dm6]	C	T	1.200e^-4	0.744	UTR_5_PRIME Cyp49a1 INTRON Galphao & 1 other
X	12089563	X_12089563_SNP [dm3] X_12195530_SNP [dm6]	A	C	1.200e^-4	0.744	INTRON Ten-a
2L	3274767	2L_3274767_DEL [dm3] 2L_3274767_DEL [dm6]	CATC	C	1.202e^-4	0.744	INTERGENIC
3L	3416464	3L_3416464_DEL [dm3] 3L_3416464_DEL [dm6]	ATCA	A	1.210e^-4	0.744	INTRON sty
3L	8048603	3L_8048603_SNP [dm3] 3L_8055503_SNP [dm6]	G	A	1.220e^-4	0.744	INTRON bip1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11978566	3L_11978566_SNP [dm3] 3L_11985466_SNP [dm6]	G	A	1.222e^-4	0.744	INTRON CG6938
3L	5493043	3L_5493043_SNP [dm3] 3L_5499943_SNP [dm6]	C	G	1.230e^-4	0.744	UPSTREAM blanks EXON CR44518	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8048630	3L_8048630_SNP [dm3] 3L_8055530_SNP [dm6]	G	T	1.233e^-4	0.744	INTRON bip1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	12010519	3R_12010519_SNP [dm3] 3R_16184797_SNP [dm6]	G	A	1.234e^-4	0.744	INTRON CG8927	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16809335	2R_16809335_SNP [dm3] 2R_20921830_SNP [dm6]	C	T	1.249e^-4	0.744	INTRON Rx
3R	12664439	3R_12664439_SNP [dm3] 3R_16838717_SNP [dm6]	A	T	1.253e^-4	0.744	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18019573	2R_18019573_SNP [dm3] 2R_22132068_SNP [dm6]	T	A	1.254e^-4	0.744	UPSTREAM CG34205 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	3353598	3L_3353598_SNP [dm3] 3L_3353598_SNP [dm6]	C	T	1.261e^-4	0.744	INTRON kst	TF binding site mE1_TFBS_cad
3L	16312986	3L_16312986_SNP [dm3] 3L_16319886_SNP [dm6]	C	A	1.263e^-4	0.744	UTR_5_PRIME CG13060 UPSTREAM CG13041 DOWNSTREAM CR45663 & 1 other EXON CR45664
2R	19592222	2R_19592222_SNP [dm3] 2R_23704699_SNP [dm6]	T	C	1.264e^-4	0.744	SYNONYMOUS_CODING l_2_dtl DOWNSTREAM l_2_not	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5906601	X_5906601_SNP [dm3] X_6012568_SNP [dm6]	G	A	1.264e^-4	0.744	SYNONYMOUS_CODING mab-21	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18695222	3R_18695222_DEL [dm3] 3R_22869500_DEL [dm6]	GATCGT	G	1.271e^-4	0.744	INTERGENIC
3R	18695232	3R_18695232_DEL [dm3] 3R_22869510_DEL [dm6]	GTAAGC	G	1.271e^-4	0.744	INTERGENIC
2R	20189393	2R_20189393_INS [dm3] 2R_24301870_INS [dm6]	T	TT	1.277e^-4	0.744	INTERGENIC
2R	19096917	2R_19096917_SNP [dm3] 2R_23209394_SNP [dm6]	T	G	1.281e^-4	0.744	DOWNSTREAM LS2 INTERGENIC	TF binding site mE1_TFBS_sens
3R	25303515	3R_25303515_SNP [dm3] 3R_29477793_SNP [dm6]	A	C	1.282e^-4	0.744	INTRON Ptp99A
2R	19584005	2R_19584005_SNP [dm3] 2R_23696482_SNP [dm6]	T	A	1.283e^-4	0.744	SYNONYMOUS_CODING CG30183	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17720191	2R_17720191_SNP [dm3] 2R_21832686_SNP [dm6]	T	A	1.290e^-4	0.744	NON_SYNONYMOUS_CODING CG34040
2R	17720194	2R_17720194_SNP [dm3] 2R_21832689_SNP [dm6]	G	T	1.290e^-4	0.744	NON_SYNONYMOUS_CODING CG34040
3L	8048641	3L_8048641_DEL [dm3] 3L_8055541_DEL [dm6]	AGAAAGA	A	1.291e^-4	0.744	INTRON bip1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17459192	2R_17459192_SNP [dm3] 2R_21571687_SNP [dm6]	C	T	1.292e^-4	0.744	UTR_5_PRIME CG10440 UPSTREAM CG10440	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	7873920	3L_7873920_SNP [dm3] 3L_7880820_SNP [dm6]	T	A	1.292e^-4	0.744	INTRON CG32365
3R	17583880	3R_17583880_SNP [dm3] 3R_21758158_SNP [dm6]	G	A	1.293e^-4	0.744	UPSTREAM CG42335 DOWNSTREAM CG31198 INTERGENIC	TF binding site mE1_TFBS_cad
3R	12352469	3R_12352469_SNP [dm3] 3R_16526747_SNP [dm6]	C	T	1.302e^-4	0.744	INTRON CG42342	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9527772	2R_9527772_SNP [dm3] 2R_13640267_SNP [dm6]	C	A	1.305e^-4	0.744	INTRON fas
X	16591968	X_16591968_SNP [dm3] X_16697935_SNP [dm6]	G	A	1.305e^-4	0.744	INTRON CG4678
2L	11359387	2L_11359387_SNP [dm3] 2L_11359387_SNP [dm6]	G	T	1.306e^-4	0.744	UTR_5_PRIME salr	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	393306	3L_393306_SNP [dm3] 3L_393306_SNP [dm6]	A	T	1.311e^-4	0.744	UPSTREAM CR43969 & 2 others INTERGENIC	TF binding site mE1_TFBS_Trl
3R	8912626	3R_8912626_SNP [dm3] 3R_13086904_SNP [dm6]	T	C	1.311e^-4	0.744	DOWNSTREAM CR44967 & 1 other INTERGENIC
2R	19833189	2R_19833189_SNP [dm3] 2R_23945666_SNP [dm6]	T	C	1.312e^-4	0.744	INTRON Galphas
2R	17720210	2R_17720210_SNP [dm3] 2R_21832705_SNP [dm6]	C	A	1.312e^-4	0.744	SYNONYMOUS_CODING CG34040
2R	18873211	2R_18873211_SNP [dm3] 2R_22985688_SNP [dm6]	G	C	1.316e^-4	0.744	NON_SYNONYMOUS_CODING CG9897 UTR_5_PRIME twi UTR_3_PRIME CG9897 UPSTREAM mir-4939 & 1 other EXON CR42742
3R	18695231	3R_18695231_SNP [dm3] 3R_22869509_SNP [dm6]	C	A	1.320e^-4	0.744	INTERGENIC
X	3283897	X_3283897_SNP [dm3] X_3389864_SNP [dm6]	T	A	1.322e^-4	0.744	UTR_3_PRIME dm & 1 other INTRON CR44999
3R	11392029	3R_11392029_SNP [dm3] 3R_15566307_SNP [dm6]	G	A	1.324e^-4	0.744	INTERGENIC
2L	7793659	2L_7793659_SNP [dm3] 2L_7793659_SNP [dm6]	T	C	1.331e^-4	0.744	SYNONYMOUS_CODING LKR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19191823	2R_19191823_SNP [dm3] 2R_23304300_SNP [dm6]	C	T	1.335e^-4	0.744	INTERGENIC
3L	9047606	3L_9047606_SNP [dm3] 3L_9054506_SNP [dm6]	C	T	1.338e^-4	0.744	UPSTREAM Argk INTRON Argk	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	275652	3L_275652_SNP [dm3] 3L_275652_SNP [dm6]	T	C	1.341e^-4	0.744	SYNONYMOUS_CODING ttm2 DOWNSTREAM miple2
3R	24925800	3R_24925800_SNP [dm3] 3R_29100078_SNP [dm6]	A	T	1.342e^-4	0.744	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23794269	3R_23794269_SNP [dm3] 3R_27968547_SNP [dm6]	C	A	1.345e^-4	0.744	INTRON betaTub97EF
2R	2426247	2R_2426247_SNP [dm3] 2R_6538742_SNP [dm6]	C	A	1.349e^-4	0.744	INTRON jing
2R	19584008	2R_19584008_SNP [dm3] 2R_23696485_SNP [dm6]	T	C	1.350e^-4	0.744	SYNONYMOUS_CODING CG30183	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	11268769	X_11268769_SNP [dm3] X_11374736_SNP [dm6]	A	G	1.350e^-4	0.744	INTRON dlg1
X	16035439	X_16035439_SNP [dm3] X_16141406_SNP [dm6]	G	A	1.351e^-4	0.744	INTRON disco-r
3L	18317249	3L_18317249_SNP [dm3] 3L_18324149_SNP [dm6]	A	G	1.356e^-4	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16454018	3L_16454018_SNP [dm3] 3L_16460918_SNP [dm6]	C	T	1.356e^-4	0.744	INTRON CG33158
2R	20050557	2R_20050557_SNP [dm3] 2R_24163034_SNP [dm6]	G	A	1.357e^-4	0.744	INTRON CG3328
3L	11246678	3L_11246678_INS [dm3] 3L_11253578_INS [dm6]	A	TT	1.358e^-4	0.744	INTRON scyl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2L	6285948	2L_6285948_SNP [dm3] 2L_6285948_SNP [dm6]	T	C	1.358e^-4	0.744	INTRON Ddr	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	18172076	3R_18172076_SNP [dm3] 3R_22346354_SNP [dm6]	G	T	1.359e^-4	0.744	INTERGENIC
3R	15644186	3R_15644186_SNP [dm3] 3R_19818464_SNP [dm6]	T	C	1.361e^-4	0.744	INTRON bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	12389069	2R_12389069_SNP [dm3] 2R_16501564_SNP [dm6]	A	G	1.364e^-4	0.744	INTRON Sema-2a	TF binding site BDTNP1_TFBS_twi
2R	18017482	2R_18017482_SNP [dm3] 2R_22129977_SNP [dm6]	C	A	1.368e^-4	0.744	DOWNSTREAM CG34205 INTRON NtR	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21959849	X_21959849_SNP [dm3] X_22558013_SNP [dm6]	T	G	1.370e^-4	0.744	INTERGENIC	transposable element FlyBase
3L	5283818	3L_5283818_SNP [dm3] 3L_5290718_SNP [dm6]	A	G	1.375e^-4	0.744	INTERGENIC
X	10256740	X_10256740_SNP [dm3] X_10362707_SNP [dm6]	T	G	1.380e^-4	0.744	INTRON l_1_G0289	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_zfh1
2L	16188315	2L_16188315_SNP [dm3] 2L_16188315_SNP [dm6]	T	C	1.381e^-4	0.744	INTRON Ca-alpha1D
X	10257515	X_10257515_SNP [dm3] X_10363482_SNP [dm6]	A	C	1.384e^-4	0.744	INTRON l_1_G0289	TF binding site mE1_TFBS_HSA
2R	13986702	2R_13986702_SNP [dm3] 2R_18099197_SNP [dm6]	C	T	1.390e^-4	0.745	SYNONYMOUS_CODING CG5098
X	3159623	X_3159623_SNP [dm3] X_3265590_SNP [dm6]	T	C	1.396e^-4	0.746	INTRON dnc
X	14089148	X_14089148_SNP [dm3] X_14195115_SNP [dm6]	C	T	1.406e^-4	0.748	SYNONYMOUS_CODING yl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	8667101	2L_8667101_SNP [dm3] 2L_8667101_SNP [dm6]	A	T	1.409e^-4	0.748	UTR_3_PRIME Sema-1a
2L	3387357	2L_3387357_SNP [dm3] 2L_3387357_SNP [dm6]	A	T	1.422e^-4	0.748	UTR_3_PRIME Sfp23F UPSTREAM CR45301 DOWNSTREAM CG42460
3L	3353524	3L_3353524_SNP [dm3] 3L_3353524_SNP [dm6]	A	G	1.424e^-4	0.748	INTRON kst	TF binding site mE1_TFBS_cad
3L	8048585	3L_8048585_MNP [dm3] 3L_8055485_MNP [dm6]	ATT	GCA	1.433e^-4	0.748	INTRON bip1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8048593	3L_8048593_DEL [dm3] 3L_8055493_DEL [dm6]	ATGCAT	A	1.433e^-4	0.748	INTRON bip1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11590727	3L_11590727_SNP [dm3] 3L_11597627_SNP [dm6]	C	T	1.438e^-4	0.748	INTRON CG7368
3R	25253738	3R_25253738_DEL [dm3] 3R_29428016_DEL [dm6]	AA	A	1.443e^-4	0.748	INTRON Ptp99A
2R	17277983	2R_17277983_SNP [dm3] 2R_21390478_SNP [dm6]	C	G	1.446e^-4	0.748	SYNONYMOUS_CODING Acox57D-d	TF binding site mE1_TFBS_cad
3R	20171805	3R_20171805_SNP [dm3] 3R_24346083_SNP [dm6]	A	T	1.447e^-4	0.748	UTR_3_PRIME CG5746
3L	8048582	3L_8048582_SNP [dm3] 3L_8055482_SNP [dm6]	T	C	1.457e^-4	0.748	INTRON bip1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9260572	3R_9260572_SNP [dm3] 3R_13434850_SNP [dm6]	G	A	1.460e^-4	0.748	START_GAINED yrt UTR_5_PRIME yrt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	16974239	3L_16974239_SNP [dm3] 3L_16981139_SNP [dm6]	T	G	1.467e^-4	0.748	SYNONYMOUS_CODING Exn	TF binding site mE1_TFBS_cad
2R	2967970	2R_2967970_SNP [dm3] 2R_7080465_SNP [dm6]	C	T	1.471e^-4	0.748	INTERGENIC
2R	12130708	2R_12130708_SNP [dm3] 2R_16243203_SNP [dm6]	A	G	1.474e^-4	0.748	UTR_3_PRIME CngA
2L	10570008	2L_10570008_DEL [dm3] 2L_10570008_DEL [dm6]	TCCC	T	1.485e^-4	0.748	INTRON Trim9
3L	16454091	3L_16454091_SNP [dm3] 3L_16460991_SNP [dm6]	T	C	1.490e^-4	0.748	INTRON CG33158
3R	18704124	3R_18704124_SNP [dm3] 3R_22878402_SNP [dm6]	T	G	1.503e^-4	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10256271	X_10256271_SNP [dm3] X_10362238_SNP [dm6]	T	G	1.503e^-4	0.748	INTRON l_1_G0289	TF binding site mE1_TFBS_HSA
3R	25459134	3R_25459134_SNP [dm3] 3R_29633412_SNP [dm6]	C	T	1.511e^-4	0.748	INTRON Dop1R2
3L	4205348	3L_4205348_SNP [dm3] 3L_4205348_SNP [dm6]	T	C	1.516e^-4	0.748	SYNONYMOUS_CODING CG43367
X	14865451	X_14865451_SNP [dm3] X_14971418_SNP [dm6]	C	T	1.520e^-4	0.748	UTR_5_PRIME eag	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	2490236	2R_2490236_SNP [dm3] 2R_6602731_SNP [dm6]	G	A	1.520e^-4	0.748	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	12222618	X_12222618_SNP [dm3] X_12328585_SNP [dm6]	C	T	1.523e^-4	0.748	SYNONYMOUS_CODING Ten-a	TF binding site mE1_TFBS_chinmo
3L	5325234	3L_5325234_SNP [dm3] 3L_5332134_SNP [dm6]	C	T	1.527e^-4	0.748	INTERGENIC
2R	17370316	2R_17370316_SNP [dm3] 2R_21482811_SNP [dm6]	A	C	1.527e^-4	0.748	NON_SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19573192	2R_19573192_SNP [dm3] 2R_23685669_SNP [dm6]	G	A	1.528e^-4	0.748	UPSTREAM l_2_efl DOWNSTREAM St3 INTRON St3	TF binding site mE1_TFBS_cad
2L	3273976	2L_3273976_SNP [dm3] 2L_3273976_SNP [dm6]	C	T	1.532e^-4	0.748	INTERGENIC
3L	16406921	3L_16406921_SNP [dm3] 3L_16413821_SNP [dm6]	C	G	1.534e^-4	0.748	INTRON TMS1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9969002	3L_9969002_SNP [dm3] 3L_9975902_SNP [dm6]	C	T	1.544e^-4	0.748	INTRON dpr6
2L	7057701	2L_7057701_SNP [dm3] 2L_7057701_SNP [dm6]	T	C	1.544e^-4	0.748	INTRON Mnn1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	20877460	X_20877460_SNP [dm3] X_21006433_SNP [dm6]	A	C	1.548e^-4	0.748	INTERGENIC
3L	10647828	3L_10647828_SNP [dm3] 3L_10654728_SNP [dm6]	G	A	1.550e^-4	0.748	INTRON CG32066	TF binding site BDTNP1_TFBS_twi
2R	10221274	2R_10221274_SNP [dm3] 2R_14333769_SNP [dm6]	C	T	1.550e^-4	0.748	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12664491	3R_12664491_SNP [dm3] 3R_16838769_SNP [dm6]	C	A	1.551e^-4	0.748	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
2R	2829648	2R_2829648_SNP [dm3] 2R_6942143_SNP [dm6]	T	A	1.552e^-4	0.748	DOWNSTREAM CheB42b INTRON mim
2L	13352223	2L_13352223_SNP [dm3] 2L_13352223_SNP [dm6]	C	G	1.556e^-4	0.748	NON_SYNONYMOUS_CODING CG9395	TF binding site mE1_TFBS_cad
X	10253192	X_10253192_SNP [dm3] X_10359159_SNP [dm6]	T	G	1.562e^-4	0.748	INTRON l_1_G0289
2R	19574014	2R_19574014_SNP [dm3] 2R_23686491_SNP [dm6]	A	C	1.564e^-4	0.748	UPSTREAM l_2_efl INTRON St3	TF binding site mE1_TFBS_cad
2R	18649166	2R_18649166_SNP [dm3] 2R_22761661_SNP [dm6]	G	A	1.564e^-4	0.748	INTRON CG42260	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22594752	3R_22594752_SNP [dm3] 3R_26769030_SNP [dm6]	C	A	1.566e^-4	0.748	UPSTREAM CR45563 INTERGENIC
X	10256737	X_10256737_SNP [dm3] X_10362704_SNP [dm6]	A	G	1.567e^-4	0.748	INTRON l_1_G0289	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_zfh1
2L	4034100	2L_4034100_SNP [dm3] 2L_4034100_SNP [dm6]	G	T	1.585e^-4	0.754	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7728855	2R_7728855_DEL [dm3] 2R_11841350_DEL [dm6]	TT	T	1.595e^-4	0.758	UPSTREAM CG34229 DOWNSTREAM S2P INTERGENIC
3L	10916999	3L_10916999_SNP [dm3] 3L_10923899_SNP [dm6]	G	A	1.602e^-4	0.758	INTERGENIC
2R	12127723	2R_12127723_SNP [dm3] 2R_16240218_SNP [dm6]	G	A	1.606e^-4	0.758	NON_SYNONYMOUS_CODING krimp DOWNSTREAM CG15708	TF binding site mE1_TFBS_HSA
3R	20514084	3R_20514084_SNP [dm3] 3R_24688362_SNP [dm6]	C	T	1.611e^-4	0.758	INTRON slo
2R	17854786	2R_17854786_SNP [dm3] 2R_21967281_SNP [dm6]	C	A	1.612e^-4	0.758	INTRON ppk9
2R	15367780	2R_15367780_INS [dm3] 2R_19480275_INS [dm6]	T	TAGT	1.621e^-4	0.758	INTRON par-1
2R	19585976	2R_19585976_SNP [dm3] 2R_23698453_SNP [dm6]	T	C	1.621e^-4	0.758	SYNONYMOUS_CODING mRpL43 UPSTREAM CG30183 DOWNSTREAM CG4091	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	8509640	X_8509640_SNP [dm3] X_8615607_SNP [dm6]	T	G	1.627e^-4	0.759	INTERGENIC	TF binding site mE1_TFBS_inv
3L	5890578	3L_5890578_SNP [dm3] 3L_5897478_SNP [dm6]	T	A	1.632e^-4	0.76	UPSTREAM CG5592 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	13194403	X_13194403_SNP [dm3] X_13300370_SNP [dm6]	A	T	1.639e^-4	0.76	DOWNSTREAM CG1622 INTRON CG1764
X	6705221	X_6705221_SNP [dm3] X_6811188_SNP [dm6]	T	G	1.641e^-4	0.76	NON_SYNONYMOUS_CODING pod1	TF binding site mE1_TFBS_cad
2R	17277565	2R_17277565_SNP [dm3] 2R_21390060_SNP [dm6]	G	A	1.647e^-4	0.761	SPLICE_SITE_REGION Acox57D-d SYNONYMOUS_CODING Acox57D-d DOWNSTREAM Acox57D-p
3R	23766813	3R_23766813_SNP [dm3] 3R_27941091_SNP [dm6]	T	G	1.654e^-4	0.762	SYNONYMOUS_CODING CG5514	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22594743	3R_22594743_SNP [dm3] 3R_26769021_SNP [dm6]	C	A	1.659e^-4	0.763	UPSTREAM CR45563 INTERGENIC
3R	12351184	3R_12351184_SNP [dm3] 3R_16525462_SNP [dm6]	C	A	1.663e^-4	0.763	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18647712	3L_18647712_SNP [dm3] 3L_18654612_SNP [dm6]	T	A	1.686e^-4	0.771	INTRON MYPT-75D
3L	11613693	3L_11613693_SNP [dm3] 3L_11620593_SNP [dm6]	G	A	1.692e^-4	0.771	UTR_3_PRIME CG6084 UPSTREAM Muc68Ca
2R	12136096	2R_12136096_SNP [dm3] 2R_16248591_SNP [dm6]	A	C	1.693e^-4	0.771	INTRON CngA
3R	11003714	3R_11003714_SNP [dm3] 3R_15177992_SNP [dm6]	T	G	1.709e^-4	0.775	UTR_3_PRIME Mf INTRON Gyc88E & 1 other
2R	19593731	2R_19593731_SNP [dm3] 2R_23706208_SNP [dm6]	G	C	1.711e^-4	0.775	NON_SYNONYMOUS_CODING l_2_not UPSTREAM l_2_tid DOWNSTREAM l_2_dtl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13291157	X_13291157_DEL [dm3] X_13397124_DEL [dm6]	GTGC	AA	1.718e^-4	0.776	UTR_5_PRIME CG1673 DOWNSTREAM CR44621	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	22594747	3R_22594747_SNP [dm3] 3R_26769025_SNP [dm6]	T	C	1.723e^-4	0.776	UPSTREAM CR45563 INTERGENIC
3R	11391949	3R_11391949_SNP [dm3] 3R_15566227_SNP [dm6]	C	T	1.725e^-4	0.776	INTERGENIC
3R	25065444	3R_25065444_SNP [dm3] 3R_29239722_SNP [dm6]	T	C	1.746e^-4	0.783	SYNONYMOUS_CODING CG31427 DOWNSTREAM CG31445
X	13194393	X_13194393_SNP [dm3] X_13300360_SNP [dm6]	G	A	1.764e^-4	0.787	DOWNSTREAM CG1622 INTRON CG1764
2L	4021845	2L_4021845_INS [dm3] 2L_4021845_INS [dm6]	C	CTA	1.768e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_jumu
3L	993929	3L_993929_SNP [dm3] 3L_993929_SNP [dm6]	T	A	1.770e^-4	0.787	UPSTREAM CG12038 DOWNSTREAM Glut1 INTERGENIC
3R	24947651	3R_24947651_SNP [dm3] 3R_29121929_SNP [dm6]	A	G	1.771e^-4	0.787	INTRON yem	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	13953958	3L_13953958_SNP [dm3] 3L_13960858_SNP [dm6]	C	A	1.782e^-4	0.789	INTRON CG32137
X	13825427	X_13825427_MNP [dm3] X_13931394_MNP [dm6]	GGA	AAC	1.784e^-4	0.789	INTRON mamo
2R	17859581	2R_17859581_SNP [dm3] 2R_21972076_SNP [dm6]	C	A	1.804e^-4	0.796	UPSTREAM CG34029 INTERGENIC
2R	17107960	2R_17107960_SNP [dm3] 2R_21220455_SNP [dm6]	A	C	1.825e^-4	0.801	SYNONYMOUS_CODING ASPP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18443095	2R_18443095_SNP [dm3] 2R_22555590_SNP [dm6]	G	A	1.827e^-4	0.801	SYNONYMOUS_CODING px	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11595997	3R_11595997_SNP [dm3] 3R_15770275_SNP [dm6]	G	A	1.830e^-4	0.801	INTERGENIC
3R	6154444	3R_6154444_SNP [dm3] 3R_10328722_SNP [dm6]	C	T	1.838e^-4	0.801	SYNONYMOUS_CODING Bruce	TF binding site mE1_TFBS_sens
3L	1151762	3L_1151762_SNP [dm3] 3L_1151762_SNP [dm6]	G	C	1.838e^-4	0.801	INTRON bab2
2R	19833194	2R_19833194_SNP [dm3] 2R_23945671_SNP [dm6]	C	A	1.849e^-4	0.801	INTRON Galphas
3L	8313237	3L_8313237_SNP [dm3] 3L_8320137_SNP [dm6]	C	A	1.856e^-4	0.801	UPSTREAM CG13670 INTERGENIC
2L	7576923	2L_7576923_SNP [dm3] 2L_7576923_SNP [dm6]	A	C	1.860e^-4	0.801	UPSTREAM RapGAP1 INTRON RapGAP1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	16989931	2R_16989931_SNP [dm3] 2R_21102426_SNP [dm6]	G	T	1.862e^-4	0.801	UTR_5_PRIME ktub DOWNSTREAM CG34396	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	13291154	X_13291154_SNP [dm3] X_13397121_SNP [dm6]	T	A	1.864e^-4	0.801	UTR_5_PRIME CG1673 DOWNSTREAM CR44621	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16221749	2R_16221749_SNP [dm3] 2R_20334244_SNP [dm6]	A	G	1.864e^-4	0.801	INTERGENIC
X	15341479	X_15341479_SNP [dm3] X_15447446_SNP [dm6]	C	T	1.872e^-4	0.801	SYNONYMOUS_CODING Scamp UTR_3_PRIME Scamp
3R	22594759	3R_22594759_SNP [dm3] 3R_26769037_SNP [dm6]	A	G	1.880e^-4	0.801	UPSTREAM CR45563 INTERGENIC
3R	12352322	3R_12352322_DEL [dm3] 3R_16526600_DEL [dm6]	ATAT	GGC	1.883e^-4	0.801	INTRON CG42342	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11590728	3L_11590728_SNP [dm3] 3L_11597628_SNP [dm6]	T	A	1.887e^-4	0.801	INTRON CG7368
3R	25306275	3R_25306275_DEL [dm3] 3R_29480553_DEL [dm6]	ACA	A	1.893e^-4	0.801	INTRON Ptp99A	TF binding site mE1_TFBS_cad
X	5699440	X_5699440_SNP [dm3] X_5805407_SNP [dm6]	C	A	1.896e^-4	0.801	DOWNSTREAM Cpr5C INTERGENIC
2R	19575059	2R_19575059_SNP [dm3] 2R_23687536_SNP [dm6]	A	T	1.900e^-4	0.801	UTR_3_PRIME St3 UPSTREAM Pal2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5533497	X_5533497_SNP [dm3] X_5639464_SNP [dm6]	C	A	1.911e^-4	0.801	INTRON CG42492	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
3R	8737791	3R_8737791_SNP [dm3] 3R_12912069_SNP [dm6]	C	T	1.914e^-4	0.801	UPSTREAM CG10909 INTERGENIC
2R	10218707	2R_10218707_SNP [dm3] 2R_14331202_SNP [dm6]	G	A	1.916e^-4	0.801	INTRON Shroom
2R	9353491	2R_9353491_SNP [dm3] 2R_13465986_SNP [dm6]	C	T	1.930e^-4	0.801	INTRON arr
2R	16959106	2R_16959106_SNP [dm3] 2R_21071601_SNP [dm6]	G	T	1.933e^-4	0.801	SYNONYMOUS_CODING CG10527 EXON CR44704	TF binding site mE1_TFBS_cad
2L	6285939	2L_6285939_SNP [dm3] 2L_6285939_SNP [dm6]	C	T	1.936e^-4	0.801	INTRON Ddr	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	8423326	X_8423326_SNP [dm3] X_8529293_SNP [dm6]	T	C	1.936e^-4	0.801	INTRON Nrg & 1 other	TF binding site mE1_TFBS_cad
3R	18695241	3R_18695241_DEL [dm3] 3R_22869519_DEL [dm6]	TCG	T	1.945e^-4	0.801	INTERGENIC
2R	9786985	2R_9786985_SNP [dm3] 2R_13899480_SNP [dm6]	T	A	1.946e^-4	0.801	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8825263	3R_8825263_SNP [dm3] 3R_12999541_SNP [dm6]	G	T	1.950e^-4	0.801	INTRON CG7518
2R	19583839	2R_19583839_SNP [dm3] 2R_23696316_SNP [dm6]	T	A	1.954e^-4	0.801	INTRON CG30183	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11292018	3R_11292018_SNP [dm3] 3R_15466296_SNP [dm6]	T	C	1.954e^-4	0.801	INTRON AdamTS-A
3R	18423341	3R_18423341_SNP [dm3] 3R_22597619_SNP [dm6]	T	A	1.958e^-4	0.801	INTRON Efa6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7583335	2L_7583335_SNP [dm3] 2L_7583335_SNP [dm6]	T	A	1.961e^-4	0.801	DOWNSTREAM Spn28B INTERGENIC
3L	11590454	3L_11590454_SNP [dm3] 3L_11597354_SNP [dm6]	C	A	1.964e^-4	0.801	UTR_5_PRIME CG7368
X	9321711	X_9321711_SNP [dm3] X_9427678_SNP [dm6]	A	G	1.972e^-4	0.801	INTRON mgl
2R	16907111	2R_16907111_SNP [dm3] 2R_21019606_SNP [dm6]	C	A	1.980e^-4	0.801	INTRON RIC-3
3R	11391989	3R_11391989_SNP [dm3] 3R_15566267_SNP [dm6]	C	G	2.010e^-4	0.801	INTERGENIC
3R	11391451	3R_11391451_SNP [dm3] 3R_15565729_SNP [dm6]	G	A	2.012e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_sens
X	12509751	X_12509751_SNP [dm3] X_12615718_SNP [dm6]	G	C	2.013e^-4	0.801	UPSTREAM CG11085 DOWNSTREAM CG2543 EXON CR45621	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15277873	2L_15277873_SNP [dm3] 2L_15277873_SNP [dm6]	T	C	2.019e^-4	0.801	INTRON CR43682
3R	12349089	3R_12349089_SNP [dm3] 3R_16523367_SNP [dm6]	C	T	2.020e^-4	0.801	INTRON CG42342
3L	2611564	3L_2611564_SNP [dm3] 3L_2611564_SNP [dm6]	G	A	2.021e^-4	0.801	SPLICE_SITE_REGION Pxn INTRON Pxn	TF binding site mE1_TFBS_cad
3R	18695240	3R_18695240_SNP [dm3] 3R_22869518_SNP [dm6]	T	A	2.023e^-4	0.801	INTERGENIC
3R	20169608	3R_20169608_INS [dm3] 3R_24343886_INS [dm6]	T	TC	2.028e^-4	0.801	DOWNSTREAM CG5746 & 1 other INTERGENIC
X	10256731	X_10256731_SNP [dm3] X_10362698_SNP [dm6]	A	T	2.029e^-4	0.801	INTRON l_1_G0289	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_zfh1
X	16592561	X_16592561_SNP [dm3] X_16698528_SNP [dm6]	G	A	2.036e^-4	0.801	DOWNSTREAM CG9676 INTRON CG4678
3L	1693479	3L_1693479_INS [dm3] 3L_1693479_INS [dm6]	G	GGTATTTATG	2.048e^-4	0.801	INTRON CG7991
2R	18343999	2R_18343999_SNP [dm3] 2R_22456494_SNP [dm6]	C	A	2.060e^-4	0.801	INTRON CG10384
3R	22594757	3R_22594757_SNP [dm3] 3R_26769035_SNP [dm6]	A	C	2.060e^-4	0.801	UPSTREAM CR45563 INTERGENIC
X	12715151	X_12715151_SNP [dm3] X_12821118_SNP [dm6]	C	T	2.072e^-4	0.801	INTRON Pde9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1611801	2L_1611801_SNP [dm3] 2L_1611801_SNP [dm6]	A	G	2.077e^-4	0.801	SYNONYMOUS_CODING CG14352 UPSTREAM CG31935 DOWNSTREAM RFeSP	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2R	15196064	2R_15196064_SNP [dm3] 2R_19308559_SNP [dm6]	G	A	2.085e^-4	0.801	INTRON EndoB
2L	3273682	2L_3273682_SNP [dm3] 2L_3273682_SNP [dm6]	G	T	2.087e^-4	0.801	INTERGENIC
3R	24819765	3R_24819765_SNP [dm3] 3R_28994043_SNP [dm6]	G	T	2.087e^-4	0.801	INTRON wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9147063	2R_9147063_SNP [dm3] 2R_13259558_SNP [dm6]	G	A	2.095e^-4	0.801	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
X	13825432	X_13825432_SNP [dm3] X_13931399_SNP [dm6]	G	A	2.101e^-4	0.801	INTRON mamo
2R	18343965	2R_18343965_SNP [dm3] 2R_22456460_SNP [dm6]	G	A	2.103e^-4	0.801	INTRON CG10384
3R	23456347	3R_23456347_SNP [dm3] 3R_27630625_SNP [dm6]	T	A	2.108e^-4	0.801	INTRON Tusp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11866839	2R_11866839_SNP [dm3] 2R_15979334_SNP [dm6]	A	G	2.114e^-4	0.801	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_sens
3L	277940	3L_277940_SNP [dm3] 3L_277940_SNP [dm6]	C	T	2.117e^-4	0.801	INTRON RhoGEF3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	9867518	3R_9867518_INS [dm3] 3R_14041796_INS [dm6]	A	AGTTCAGCTTAGA...	2.123e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	17624076	X_17624076_SNP [dm3] X_17730043_SNP [dm6]	A	C	2.125e^-4	0.801	INTRON CG42684
3L	284952	3L_284952_SNP [dm3] 3L_284952_SNP [dm6]	T	C	2.132e^-4	0.801	INTRON RhoGEF3	TF binding site mE1_TFBS_HSA
3L	10318700	3L_10318700_INS [dm3] 3L_10325600_INS [dm6]	A	AA	2.136e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	14865019	X_14865019_SNP [dm3] X_14970986_SNP [dm6]	C	T	2.137e^-4	0.801	INTRON eag	TF binding site BDTNP1_TFBS_dl
X	16592027	X_16592027_SNP [dm3] X_16697994_SNP [dm6]	G	A	2.140e^-4	0.801	INTRON CG4678
3L	10647854	3L_10647854_SNP [dm3] 3L_10654754_SNP [dm6]	T	C	2.153e^-4	0.801	INTRON CG32066	TF binding site BDTNP1_TFBS_twi
2R	2967969	2R_2967969_SNP [dm3] 2R_7080464_SNP [dm6]	C	T	2.155e^-4	0.801	INTERGENIC
X	12364580	X_12364580_SNP [dm3] X_12470547_SNP [dm6]	G	T	2.159e^-4	0.801	INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18564290	2R_18564290_SNP [dm3] 2R_22676785_SNP [dm6]	G	C	2.160e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	6435937	X_6435937_SNP [dm3] X_6541904_SNP [dm6]	T	G	2.160e^-4	0.801	INTRON CG34417
2L	13118638	2L_13118638_SNP [dm3] 2L_13118638_SNP [dm6]	A	T	2.166e^-4	0.801	UPSTREAM CG43050 DOWNSTREAM CR44198 INTERGENIC
2R	14188376	2R_14188376_SNP [dm3] 2R_18300871_SNP [dm6]	C	T	2.169e^-4	0.801	DOWNSTREAM CG18540 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad
3R	18748821	3R_18748821_SNP [dm3] 3R_22923099_SNP [dm6]	T	A	2.171e^-4	0.801	UPSTREAM CG6660 INTRON klg
3L	1692955	3L_1692955_SNP [dm3] 3L_1692955_SNP [dm6]	A	T	2.178e^-4	0.801	INTRON CG7991
3L	7937314	3L_7937314_INS [dm3] 3L_7944214_INS [dm6]	A	ACGGTTTATATA...	2.180e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9259126	2L_9259126_SNP [dm3] 2L_9259126_SNP [dm6]	C	A	2.186e^-4	0.801	INTRON Ggamma30A
2L	4050100	2L_4050100_SNP [dm3] 2L_4050100_SNP [dm6]	G	A	2.192e^-4	0.801	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18584133	3R_18584133_SNP [dm3] 3R_22758411_SNP [dm6]	T	A	2.207e^-4	0.801	DOWNSTREAM CG4725 INTRON Usp12-46 & 1 other
2R	17478089	2R_17478089_SNP [dm3] 2R_21590584_SNP [dm6]	C	A	2.210e^-4	0.801	NON_SYNONYMOUS_CODING CG33225
2R	19598853	2R_19598853_SNP [dm3] 2R_23711330_SNP [dm6]	C	T	2.214e^-4	0.801	INTERGENIC
X	17071231	X_17071231_SNP [dm3] X_17177198_SNP [dm6]	C	T	2.222e^-4	0.801	UTR_5_PRIME baz INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
3R	18930775	3R_18930775_SNP [dm3] 3R_23105053_SNP [dm6]	G	C	2.223e^-4	0.801	INTRON CG13830
3R	23780670	3R_23780670_SNP [dm3] 3R_27954948_SNP [dm6]	G	T	2.223e^-4	0.801	UTR_5_PRIME CG5527 UPSTREAM CG4951	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7826479	2L_7826479_SNP [dm3] 2L_7826479_SNP [dm6]	G	A	2.225e^-4	0.801	INTRON Rack1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	13176877	X_13176877_SNP [dm3] X_13282844_SNP [dm6]	A	G	2.227e^-4	0.801	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17141645	2R_17141645_INS [dm3] 2R_21254140_INS [dm6]	A	ATTGAACC	2.233e^-4	0.801	INTERGENIC
2L	9768352	2L_9768352_SNP [dm3] 2L_9768352_SNP [dm6]	G	A	2.234e^-4	0.801	SYNONYMOUS_CODING CG4017 UPSTREAM CG17633 INTRON ppk18
2R	17102767	2R_17102767_SNP [dm3] 2R_21215262_SNP [dm6]	T	C	2.235e^-4	0.801	UPSTREAM CG4302 DOWNSTREAM CG15661 INTERGENIC
2R	19602552	2R_19602552_SNP [dm3] 2R_23715029_SNP [dm6]	A	G	2.236e^-4	0.801	INTRON Sesn
2R	12708758	2R_12708758_SNP [dm3] 2R_16821253_SNP [dm6]	G	A	2.249e^-4	0.801	INTERGENIC
X	14848809	X_14848809_SNP [dm3] X_14954776_SNP [dm6]	A	T	2.249e^-4	0.801	UPSTREAM eag INTRON CG9030	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2L	4273106	2L_4273106_SNP [dm3] 2L_4273106_SNP [dm6]	T	G	2.250e^-4	0.801	INTERGENIC
2R	10218999	2R_10218999_SNP [dm3] 2R_14331494_SNP [dm6]	T	C	2.256e^-4	0.801	UPSTREAM Shroom INTRON Shroom	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
2R	17921578	2R_17921578_SNP [dm3] 2R_22034073_SNP [dm6]	A	T	2.269e^-4	0.801	UPSTREAM CG9308 INTRON CG34370
2L	621863	2L_621863_SNP [dm3] 2L_621863_SNP [dm6]	C	T	2.274e^-4	0.801	UPSTREAM lectin-21Cb INTERGENIC
2R	8548904	2R_8548904_SNP [dm3] 2R_12661399_SNP [dm6]	A	T	2.284e^-4	0.801	UTR_5_PRIME nemy INTRON nemy
X	10875792	X_10875792_SNP [dm3] X_10981759_SNP [dm6]	T	A	2.291e^-4	0.801	INTRON CG42339
3R	18622398	3R_18622398_SNP [dm3] 3R_22796676_SNP [dm6]	G	T	2.306e^-4	0.801	INTERGENIC
2R	17265383	2R_17265383_SNP [dm3] 2R_21377878_SNP [dm6]	T	C	2.307e^-4	0.801	INTRON cv-2
3L	7701953	3L_7701953_SNP [dm3] 3L_7708853_SNP [dm6]	C	A	2.307e^-4	0.801	DOWNSTREAM Ank2 INTRON CG32373 & 1 other
3R	12010586	3R_12010586_SNP [dm3] 3R_16184864_SNP [dm6]	C	G	2.322e^-4	0.801	INTRON CG8927	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18570607	2R_18570607_SNP [dm3] 2R_22683102_SNP [dm6]	T	C	2.330e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_sens
2R	6568819	2R_6568819_SNP [dm3] 2R_10681314_SNP [dm6]	C	A	2.330e^-4	0.801	INTRON stan	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	14881947	X_14881947_SNP [dm3] X_14987914_SNP [dm6]	C	G	2.346e^-4	0.801	INTRON eag	TF binding site BDTNP1_TFBS_dl
3R	23770758	3R_23770758_SNP [dm3] 3R_27945036_SNP [dm6]	G	T	2.347e^-4	0.801	INTRON mfrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7728861	2R_7728861_DEL [dm3] 2R_11841356_DEL [dm6]	GTTA	T	2.350e^-4	0.801	UPSTREAM CG34229 DOWNSTREAM S2P INTERGENIC
2R	19583589	2R_19583589_SNP [dm3] 2R_23696066_SNP [dm6]	G	A	2.354e^-4	0.801	SYNONYMOUS_CODING CG30183 DOWNSTREAM angel	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9260710	3R_9260710_SNP [dm3] 3R_13434988_SNP [dm6]	T	A	2.359e^-4	0.801	UPSTREAM yrt INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu
2L	13118632	2L_13118632_SNP [dm3] 2L_13118632_SNP [dm6]	T	G	2.361e^-4	0.801	UPSTREAM CG43050 DOWNSTREAM CR44198 INTERGENIC
3L	3420983	3L_3420983_SNP [dm3] 3L_3420983_SNP [dm6]	A	T	2.363e^-4	0.801	INTRON sty	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3L	16454038	3L_16454038_SNP [dm3] 3L_16460938_SNP [dm6]	A	G	2.365e^-4	0.801	INTRON CG33158
2R	19577979	2R_19577979_SNP [dm3] 2R_23690456_SNP [dm6]	C	A	2.370e^-4	0.801	UTR_3_PRIME Pal2 & 1 other DOWNSTREAM CG30183 & 1 other
2R	16408196	2R_16408196_SNP [dm3] 2R_20520691_SNP [dm6]	C	T	2.372e^-4	0.801	INTERGENIC
3L	3421063	3L_3421063_SNP [dm3] 3L_3421063_SNP [dm6]	A	C	2.372e^-4	0.801	INTRON sty	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	3421068	3L_3421068_SNP [dm3] 3L_3421068_SNP [dm6]	A	T	2.372e^-4	0.801	INTRON sty	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	19585961	2R_19585961_SNP [dm3] 2R_23698438_SNP [dm6]	T	C	2.384e^-4	0.801	SYNONYMOUS_CODING mRpL43 UPSTREAM CG30183 DOWNSTREAM CG4091	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	10252888	X_10252888_SNP [dm3] X_10358855_SNP [dm6]	G	A	2.393e^-4	0.801	SPLICE_SITE_REGION l_1_G0289 INTRON l_1_G0289	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13586479	3R_13586479_SNP [dm3] 3R_17760757_SNP [dm6]	G	A	2.398e^-4	0.801	INTRON TyrR
2L	6181669	2L_6181669_SNP [dm3] 2L_6181669_SNP [dm6]	A	G	2.399e^-4	0.801	INTRON CG34380
2R	15196066	2R_15196066_SNP [dm3] 2R_19308561_SNP [dm6]	T	A	2.404e^-4	0.801	INTRON EndoB
3L	4589747	3L_4589747_SNP [dm3] 3L_4589747_SNP [dm6]	G	C	2.406e^-4	0.801	INTRON CG42540
2L	15762505	2L_15762505_SNP [dm3] 2L_15762505_SNP [dm6]	G	A	2.407e^-4	0.801	UTR_5_PRIME Gli UPSTREAM Gli INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	15175318	3L_15175318_SNP [dm3] 3L_15182218_SNP [dm6]	A	T	2.410e^-4	0.801	INTERGENIC
X	12222600	X_12222600_SNP [dm3] X_12328567_SNP [dm6]	C	T	2.421e^-4	0.801	SYNONYMOUS_CODING Ten-a	TF binding site mE1_TFBS_chinmo
2R	12383788	2R_12383788_SNP [dm3] 2R_16496283_SNP [dm6]	A	G	2.426e^-4	0.801	DOWNSTREAM CG7813 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	5127265	3L_5127265_SNP [dm3] 3L_5134165_SNP [dm6]	A	G	2.432e^-4	0.801	UPSTREAM CG4603 & 1 other INTRON CG4603	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	7564258	2R_7564258_SNP [dm3] 2R_11676753_SNP [dm6]	C	T	2.434e^-4	0.801	SYNONYMOUS_CODING Tret1-2 INTRON Roc2	TF binding site mE1_TFBS_cad
2R	18900025	2R_18900025_SNP [dm3] 2R_23012502_SNP [dm6]	C	T	2.436e^-4	0.801	SYNONYMOUS_CODING CG42741 INTRON twi	TF binding site mE1_TFBS_chinmo
3R	10207812	3R_10207812_DEL [dm3] 3R_14382090_DEL [dm6]	AA	A	2.437e^-4	0.801	UPSTREAM soti INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	22069586	X_22069586_SNP [dm3] X_22667750_SNP [dm6]	C	T	2.440e^-4	0.801	INTRON CR44997
2L	3989166	2L_3989166_SNP [dm3] 2L_3989166_SNP [dm6]	T	A	2.446e^-4	0.801	INTRON fred	TF binding site mE1_TFBS_bab1
3R	8737812	3R_8737812_SNP [dm3] 3R_12912090_SNP [dm6]	C	A	2.448e^-4	0.801	UPSTREAM CG10909 INTERGENIC
3R	15772484	3R_15772484_SNP [dm3] 3R_19946762_SNP [dm6]	G	C	2.451e^-4	0.801	INTRON Hs6st
2R	5719124	2R_5719124_SNP [dm3] 2R_9831619_SNP [dm6]	G	C	2.455e^-4	0.801	UPSTREAM hebe INTRON hebe
2R	17856462	2R_17856462_SNP [dm3] 2R_21968957_SNP [dm6]	A	T	2.470e^-4	0.801	INTRON ppk9
2R	15152756	2R_15152756_SNP [dm3] 2R_19265251_SNP [dm6]	C	T	2.479e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	3282467	2L_3282467_SNP [dm3] 2L_3282467_SNP [dm6]	G	A	2.487e^-4	0.801	INTERGENIC
2L	6067095	2L_6067095_SNP [dm3] 2L_6067095_SNP [dm6]	C	G	2.489e^-4	0.801	SYNONYMOUS_CODING CG9147 DOWNSTREAM CG9150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	11138438	2L_11138438_SNP [dm3] 2L_11138438_SNP [dm6]	C	T	2.491e^-4	0.801	SYNONYMOUS_CODING hgo DOWNSTREAM Gyc32E
3R	5695330	3R_5695330_SNP [dm3] 3R_9869608_SNP [dm6]	A	C	2.492e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	6409595	X_6409595_SNP [dm3] X_6515562_SNP [dm6]	T	A	2.493e^-4	0.801	INTRON CG42340
2L	11882670	2L_11882670_SNP [dm3] 2L_11882670_SNP [dm6]	A	T	2.493e^-4	0.801	INTRON Pde1c
3R	13751551	3R_13751551_SNP [dm3] 3R_17925829_SNP [dm6]	A	G	2.494e^-4	0.801	INTRON cpo	TF binding site mE1_TFBS_Trl
2R	6984281	2R_6984281_SNP [dm3] 2R_11096776_SNP [dm6]	G	A	2.497e^-4	0.801	INTRON luna	TF binding site BDTNP1_TFBS_twi
3L	8048656	3L_8048656_SNP [dm3] 3L_8055556_SNP [dm6]	G	T	2.499e^-4	0.801	INTRON bip1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7698694	3L_7698694_SNP [dm3] 3L_7705594_SNP [dm6]	G	T	2.505e^-4	0.801	UTR_3_PRIME Ank2 INTRON CG32373 & 1 other
2R	9353495	2R_9353495_SNP [dm3] 2R_13465990_SNP [dm6]	C	A	2.512e^-4	0.801	INTRON arr
2R	9147155	2R_9147155_SNP [dm3] 2R_13259650_SNP [dm6]	A	T	2.516e^-4	0.801	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2L	13677874	2L_13677874_SNP [dm3] 2L_13677874_SNP [dm6]	C	T	2.522e^-4	0.801	UTR_3_PRIME CG31814 DOWNSTREAM CG31814
2L	1599328	2L_1599328_SNP [dm3] 2L_1599328_SNP [dm6]	G	A	2.522e^-4	0.801	INTRON haf & 1 other
2R	19734934	2R_19734934_DEL [dm3] 2R_23847411_DEL [dm6]	AAA	A	2.525e^-4	0.801	UTR_3_PRIME ytr DOWNSTREAM CG5554
X	2549594	X_2549594_SNP [dm3] X_2655561_SNP [dm6]	T	C	2.526e^-4	0.801	INTRON sgg
X	13194382	X_13194382_SNP [dm3] X_13300349_SNP [dm6]	C	T	2.529e^-4	0.801	DOWNSTREAM CG1622 INTRON CG1764
2R	10221626	2R_10221626_SNP [dm3] 2R_14334121_SNP [dm6]	A	C	2.533e^-4	0.801	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16332557	3L_16332557_SNP [dm3] 3L_16339457_SNP [dm6]	A	G	2.535e^-4	0.801	INTRON CG4998
2R	17276932	2R_17276932_SNP [dm3] 2R_21389427_SNP [dm6]	C	T	2.549e^-4	0.801	START_GAINED Acox57D-d UTR_5_PRIME Acox57D-d DOWNSTREAM Acox57D-p
2R	13213176	2R_13213176_SNP [dm3] 2R_17325671_SNP [dm6]	C	T	2.550e^-4	0.801	INTRON mbl
X	15502237	X_15502237_SNP [dm3] X_15608204_SNP [dm6]	T	C	2.550e^-4	0.801	INTRON sog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13936399	2R_13936399_SNP [dm3] 2R_18048894_SNP [dm6]	G	A	2.562e^-4	0.801	UTR_3_PRIME CG34005 & 1 other DOWNSTREAM CG14495 & 1 other	TF binding site mE1_TFBS_bab1
2L	6067062	2L_6067062_SNP [dm3] 2L_6067062_SNP [dm6]	T	G	2.563e^-4	0.801	SYNONYMOUS_CODING CG9147 DOWNSTREAM CG9150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	18257971	3R_18257971_SNP [dm3] 3R_22432249_SNP [dm6]	A	G	2.570e^-4	0.801	INTRON CG13847
X	13194372	X_13194372_SNP [dm3] X_13300339_SNP [dm6]	T	A	2.577e^-4	0.801	DOWNSTREAM CG1622 INTRON CG1764
3R	11394002	3R_11394002_SNP [dm3] 3R_15568280_SNP [dm6]	G	A	2.580e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4056347	3L_4056347_SNP [dm3] 3L_4056347_SNP [dm6]	C	T	2.603e^-4	0.801	INTRON CG1136	TF binding site mE1_TFBS_cad
2R	11211667	2R_11211667_SNP [dm3] 2R_15324162_SNP [dm6]	C	T	2.607e^-4	0.801	INTRON Arf51F
3R	24947652	3R_24947652_SNP [dm3] 3R_29121930_SNP [dm6]	A	G	2.617e^-4	0.801	INTRON yem	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	9731780	2R_9731780_SNP [dm3] 2R_13844275_SNP [dm6]	T	C	2.619e^-4	0.801	INTRON Syngr
2R	15202136	2R_15202136_SNP [dm3] 2R_19314631_SNP [dm6]	G	A	2.625e^-4	0.801	SYNONYMOUS_CODING Rgk1
2L	3273790	2L_3273790_SNP [dm3] 2L_3273790_SNP [dm6]	T	G	2.627e^-4	0.801	INTERGENIC
2R	13800761	2R_13800761_SNP [dm3] 2R_17913256_SNP [dm6]	A	T	2.630e^-4	0.801	INTRON Elk
3R	24819773	3R_24819773_SNP [dm3] 3R_28994051_SNP [dm6]	T	A	2.643e^-4	0.801	SPLICE_SITE_REGION wat INTRON wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5325277	3L_5325277_SNP [dm3] 3L_5332177_SNP [dm6]	A	G	2.646e^-4	0.801	INTERGENIC
2L	6219698	2L_6219698_SNP [dm3] 2L_6219698_SNP [dm6]	A	C	2.648e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	3307469	2R_3307469_SNP [dm3] 2R_7419964_SNP [dm6]	C	A	2.652e^-4	0.801	UTR_5_PRIME so	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3L	16063914	3L_16063914_SNP [dm3] 3L_16070814_SNP [dm6]	T	A	2.657e^-4	0.801	INTRON Mbs
2R	19578379	2R_19578379_SNP [dm3] 2R_23690856_SNP [dm6]	A	T	2.660e^-4	0.801	UTR_3_PRIME CG30183 DOWNSTREAM Pal2	TF binding site mE1_TFBS_cad
3R	10619353	3R_10619353_SNP [dm3] 3R_14793631_SNP [dm6]	T	A	2.666e^-4	0.801	UTR_3_PRIME jvl DOWNSTREAM jvl INTRON jvl	TF binding site mE1_TFBS_HSA
2R	14609853	2R_14609853_SNP [dm3] 2R_18722348_SNP [dm6]	G	C	2.666e^-4	0.801	INTRON Hs3st-A
2R	9704385	2R_9704385_SNP [dm3] 2R_13816880_SNP [dm6]	A	C	2.671e^-4	0.801	SYNONYMOUS_CODING stj	TF binding site BDTNP1_TFBS_twi
2L	6396890	2L_6396890_SNP [dm3] 2L_6396890_SNP [dm6]	G	A	2.675e^-4	0.801	SYNONYMOUS_CODING CG42369 INTRON CG42368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12750507	2L_12750507_SNP [dm3] 2L_12750507_SNP [dm6]	G	C	2.677e^-4	0.801	INTERGENIC
2R	1789219	2R_1789219_SNP [dm3] 2R_5901714_SNP [dm6]	T	A	2.678e^-4	0.801	INTRON CG43366	TF binding site mE1_TFBS_HSA
2L	1314974	2L_1314974_SNP [dm3] 2L_1314974_SNP [dm6]	A	T	2.682e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	8041981	3L_8041981_DEL [dm3] 3L_8048881_DEL [dm6]	TT	T	2.685e^-4	0.801	INTRON nmo
2R	8587713	2R_8587713_SNP [dm3] 2R_12700208_SNP [dm6]	A	C	2.692e^-4	0.801	UTR_5_PRIME wuc
2L	2926199	2L_2926199_SNP [dm3] 2L_2926199_SNP [dm6]	C	A	2.694e^-4	0.801	INTRON lilli
3L	8048592	3L_8048592_SNP [dm3] 3L_8055492_SNP [dm6]	T	C	2.698e^-4	0.801	INTRON bip1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	17198924	X_17198924_SNP [dm3] X_17304891_SNP [dm6]	C	T	2.705e^-4	0.801	UTR_3_PRIME CG5445
3R	2644214	3R_2644214_SNP [dm3] 3R_6818492_SNP [dm6]	T	A	2.713e^-4	0.801	DOWNSTREAM tRNA:CR31485:Psi INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4082636	2L_4082636_SNP [dm3] 2L_4082636_SNP [dm6]	T	A	2.719e^-4	0.801	INTRON ed
2R	17921393	2R_17921393_SNP [dm3] 2R_22033888_SNP [dm6]	A	T	2.722e^-4	0.801	UPSTREAM CG9308 INTRON CG34370
3R	27209656	3R_27209656_SNP [dm3] 3R_31383934_SNP [dm6]	T	G	2.733e^-4	0.801	UPSTREAM CG1607 INTRON CG1607	TF binding site mE1_TFBS_Trl
X	5955123	X_5955123_SNP [dm3] X_6061090_SNP [dm6]	A	C	2.734e^-4	0.801	SYNONYMOUS_CODING CG5921	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12602184	3L_12602184_SNP [dm3] 3L_12609084_SNP [dm6]	A	G	2.739e^-4	0.801	UPSTREAM caup INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9194096	2L_9194096_DEL [dm3] 2L_9194096_DEL [dm6]	TGGGGAT	T	2.740e^-4	0.801	INTRON tai
2L	15826655	2L_15826655_SNP [dm3] 2L_15826655_SNP [dm6]	T	C	2.742e^-4	0.801	INTERGENIC
3R	17583843	3R_17583843_SNP [dm3] 3R_21758121_SNP [dm6]	T	A	2.749e^-4	0.801	UPSTREAM CG42335 DOWNSTREAM CG31198 INTERGENIC	TF binding site mE1_TFBS_cad
3L	9968267	3L_9968267_SNP [dm3] 3L_9975167_SNP [dm6]	C	A	2.754e^-4	0.801	UTR_5_PRIME dpr6
3R	26911428	3R_26911428_SNP [dm3] 3R_31085706_SNP [dm6]	G	A	2.763e^-4	0.801	INTERGENIC
3L	8041986	3L_8041986_SNP [dm3] 3L_8048886_SNP [dm6]	A	C	2.770e^-4	0.801	INTRON nmo
3L	3021567	3L_3021567_SNP [dm3] 3L_3021567_SNP [dm6]	A	C	2.773e^-4	0.801	INTERGENIC
2L	11139074	2L_11139074_SNP [dm3] 2L_11139074_SNP [dm6]	C	T	2.777e^-4	0.801	SYNONYMOUS_CODING Gyc32E DOWNSTREAM hgo
3L	9196743	3L_9196743_SNP [dm3] 3L_9203643_SNP [dm6]	G	A	2.779e^-4	0.801	SYNONYMOUS_CODING Slc45-1
2R	8976649	2R_8976649_SNP [dm3] 2R_13089144_SNP [dm6]	C	A	2.786e^-4	0.801	INTERGENIC
2L	3472150	2L_3472150_SNP [dm3] 2L_3472150_SNP [dm6]	G	A	2.793e^-4	0.801	NON_SYNONYMOUS_CODING CG31776 UPSTREAM pgant4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_zfh1
X	9778948	X_9778948_SNP [dm3] X_9884915_SNP [dm6]	G	A	2.801e^-4	0.801	UTR_3_PRIME CG9691 INTRON CG9691
3R	8875391	3R_8875391_SNP [dm3] 3R_13049669_SNP [dm6]	T	A	2.803e^-4	0.801	DOWNSTREAM CG31157 INTRON CG7966
2R	16092376	2R_16092376_SNP [dm3] 2R_20204871_SNP [dm6]	A	T	2.814e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	17357705	2R_17357705_INS [dm3] 2R_21470200_INS [dm6]	C	CACAGC	2.824e^-4	0.801	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
3R	15462327	3R_15462327_SNP [dm3] 3R_19636605_SNP [dm6]	T	G	2.825e^-4	0.801	SYNONYMOUS_CODING subdued DOWNSTREAM CG34138
3L	3421065	3L_3421065_SNP [dm3] 3L_3421065_SNP [dm6]	T	C	2.826e^-4	0.801	INTRON sty	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	19566059	2R_19566059_SNP [dm3] 2R_23678536_SNP [dm6]	G	A	2.827e^-4	0.801	INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12425510	3L_12425510_SNP [dm3] 3L_12432410_SNP [dm6]	T	C	2.829e^-4	0.801	UTR_5_PRIME toe	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	18752566	2R_18752566_SNP [dm3] 2R_22865043_SNP [dm6]	T	A	2.834e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	19067996	3R_19067996_SNP [dm3] 3R_23242274_SNP [dm6]	T	A	2.834e^-4	0.801	INTRON CG4467
X	17069748	X_17069748_SNP [dm3] X_17175715_SNP [dm6]	G	T	2.836e^-4	0.801	UTR_5_PRIME baz INTRON baz	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_zfh1
X	8509689	X_8509689_SNP [dm3] X_8615656_SNP [dm6]	C	T	2.837e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_inv
3R	12350440	3R_12350440_SNP [dm3] 3R_16524718_SNP [dm6]	A	C	2.841e^-4	0.801	INTRON CG42342	TF binding site mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3R	18253766	3R_18253766_SNP [dm3] 3R_22428044_SNP [dm6]	T	A	2.842e^-4	0.801	INTRON CG13847
2L	7627264	2L_7627264_SNP [dm3] 2L_7627264_SNP [dm6]	T	A	2.845e^-4	0.801	INTERGENIC
3L	14645800	3L_14645800_SNP [dm3] 3L_14652700_SNP [dm6]	C	T	2.846e^-4	0.801	INTRON dlp
3R	25859059	3R_25859059_SNP [dm3] 3R_30033337_SNP [dm6]	C	T	2.847e^-4	0.801	SYNONYMOUS_CODING Axn UTR_3_PRIME Axn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15218495	2L_15218495_DEL [dm3] 2L_15218495_DEL [dm6]	ATTAA	A	2.847e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_inv
2R	19833176	2R_19833176_SNP [dm3] 2R_23945653_SNP [dm6]	C	A	2.847e^-4	0.801	INTRON Galphas
2L	4162105	2L_4162105_SNP [dm3] 2L_4162105_SNP [dm6]	G	A	2.853e^-4	0.801	INTERGENIC
3L	16037797	3L_16037797_SNP [dm3] 3L_16044697_SNP [dm6]	G	A	2.857e^-4	0.801	INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	6067056	2L_6067056_SNP [dm3] 2L_6067056_SNP [dm6]	T	A	2.859e^-4	0.801	SYNONYMOUS_CODING CG9147 DOWNSTREAM CG9150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	1262111	3L_1262111_SNP [dm3] 3L_1262111_SNP [dm6]	T	A	2.867e^-4	0.801	INTRON CG9134
2L	5545792	2L_5545792_SNP [dm3] 2L_5545792_SNP [dm6]	T	C	2.870e^-4	0.801	UTR_3_PRIME Lam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	17116348	2R_17116348_SNP [dm3] 2R_21228843_SNP [dm6]	G	A	2.871e^-4	0.801	INTRON ASPP
3R	6587608	3R_6587608_SNP [dm3] 3R_10761886_SNP [dm6]	A	G	2.876e^-4	0.801	NON_SYNONYMOUS_CODING Cap-H2 UTR_5_PRIME Cap-H2 UPSTREAM MED7 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13094193	3R_13094193_SNP [dm3] 3R_17268471_SNP [dm6]	A	G	2.880e^-4	0.801	INTERGENIC
2R	7499116	2R_7499116_SNP [dm3] 2R_11611611_SNP [dm6]	C	A	2.881e^-4	0.801	INTRON tou	TF binding site BDTNP1_TFBS_dl
2L	16188311	2L_16188311_INS [dm3] 2L_16188311_INS [dm6]	A	AC	2.884e^-4	0.801	INTRON Ca-alpha1D
3R	12010790	3R_12010790_SNP [dm3] 3R_16185068_SNP [dm6]	G	A	2.885e^-4	0.801	SYNONYMOUS_CODING CG8927	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17791809	2R_17791809_DEL [dm3] 2R_21904304_DEL [dm6]	TGCCAGT	T	2.895e^-4	0.801	INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	10805132	X_10805132_INS [dm3] X_10911099_INS [dm6]	T	TTCGAGACCAGATATATGGC...	2.909e^-4	0.801	INTRON CG43901
2L	1753489	2L_1753489_SNP [dm3] 2L_1753489_SNP [dm6]	C	G	2.913e^-4	0.801	DOWNSTREAM CG17648 INTERGENIC
2R	16602525	2R_16602525_SNP [dm3] 2R_20715020_SNP [dm6]	G	A	2.915e^-4	0.801	INTRON dpr
3L	14644442	3L_14644442_SNP [dm3] 3L_14651342_SNP [dm6]	A	C	2.918e^-4	0.801	INTRON dlp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	11246649	3L_11246649_SNP [dm3] 3L_11253549_SNP [dm6]	A	T	2.920e^-4	0.801	INTRON scyl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2L	11138779	2L_11138779_SNP [dm3] 2L_11138779_SNP [dm6]	C	A	2.934e^-4	0.801	UTR_3_PRIME Gyc32E DOWNSTREAM hgo
3L	9273343	3L_9273343_SNP [dm3] 3L_9280243_SNP [dm6]	T	A	2.945e^-4	0.801	INTRON GluRIB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
X	17426972	X_17426972_SNP [dm3] X_17532939_SNP [dm6]	C	T	2.946e^-4	0.801	SYNONYMOUS_CODING CG43658	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	993911	3L_993911_SNP [dm3] 3L_993911_SNP [dm6]	T	C	2.950e^-4	0.801	UPSTREAM CG12038 DOWNSTREAM Glut1 INTERGENIC
3L	14470581	3L_14470581_SNP [dm3] 3L_14477481_SNP [dm6]	G	A	2.950e^-4	0.801	UPSTREAM bbg INTRON bbg	TF binding site mE1_TFBS_Trl
3R	23803289	3R_23803289_SNP [dm3] 3R_27977567_SNP [dm6]	A	C	2.952e^-4	0.801	INTRON betaTub97EF
X	21292492	X_21292492_SNP [dm3] X_21421465_SNP [dm6]	G	A	2.965e^-4	0.801	DOWNSTREAM CG42343 INTERGENIC	transposable element FlyBase
3L	8437309	3L_8437309_SNP [dm3] 3L_8444209_SNP [dm6]	T	C	2.969e^-4	0.801	SYNONYMOUS_CODING CG6983	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	12570172	2L_12570172_SNP [dm3] 2L_12570172_SNP [dm6]	C	T	2.974e^-4	0.801	DOWNSTREAM CR44598 & 1 other INTERGENIC
X	16593138	X_16593138_SNP [dm3] X_16699105_SNP [dm6]	A	C	2.986e^-4	0.801	DOWNSTREAM CG9676 INTRON CG4678
2L	4129624	2L_4129624_SNP [dm3] 2L_4129624_SNP [dm6]	C	T	2.992e^-4	0.801	INTERGENIC
2R	9084275	2R_9084275_SNP [dm3] 2R_13196770_SNP [dm6]	A	G	2.992e^-4	0.801	INTRON Kdm4B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	7582314	2R_7582314_SNP [dm3] 2R_11694809_SNP [dm6]	C	G	2.995e^-4	0.801	NON_SYNONYMOUS_CODING CG13197
3R	21345556	3R_21345556_SNP [dm3] 3R_25519834_SNP [dm6]	C	T	2.998e^-4	0.801	INTRON msi
2R	14571704	2R_14571704_DEL [dm3] 2R_18684199_DEL [dm6]	GTG	G	3.004e^-4	0.801	UPSTREAM CG44434 & 1 other DOWNSTREAM CG44433 INTERGENIC
2L	11139631	2L_11139631_SNP [dm3] 2L_11139631_SNP [dm6]	A	G	3.004e^-4	0.801	SYNONYMOUS_CODING Gyc32E
X	16035812	X_16035812_INS [dm3] X_16141779_INS [dm6]	C	CTGC	3.008e^-4	0.801	INTRON disco-r
2R	19598850	2R_19598850_SNP [dm3] 2R_23711327_SNP [dm6]	T	A	3.008e^-4	0.801	INTERGENIC
3R	12986962	3R_12986962_SNP [dm3] 3R_17161240_SNP [dm6]	A	T	3.018e^-4	0.801	INTRON Mur89F
2R	10288787	2R_10288787_SNP [dm3] 2R_14401282_SNP [dm6]	A	T	3.026e^-4	0.801	INTERGENIC
2R	12709311	2R_12709311_SNP [dm3] 2R_16821806_SNP [dm6]	T	A	3.029e^-4	0.801	INTERGENIC
X	6166999	X_6166999_SNP [dm3] X_6272966_SNP [dm6]	G	A	3.029e^-4	0.801	SYNONYMOUS_CODING Spt6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14194534	X_14194534_SNP [dm3] X_14300501_SNP [dm6]	A	T	3.031e^-4	0.801	INTERGENIC
2R	16092375	2R_16092375_SNP [dm3] 2R_20204870_SNP [dm6]	G	T	3.037e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	13658317	2L_13658317_SNP [dm3] 2L_13658317_SNP [dm6]	T	C	3.043e^-4	0.801	INTERGENIC
3R	18926429	3R_18926429_SNP [dm3] 3R_23100707_SNP [dm6]	G	C	3.046e^-4	0.801	INTRON CG13830 & 1 other
X	11821314	X_11821314_SNP [dm3] X_11927281_SNP [dm6]	A	C	3.046e^-4	0.801	INTRON CG10362
2R	3644991	2R_3644991_SNP [dm3] 2R_7757486_SNP [dm6]	A	C	3.054e^-4	0.801	INTRON CG30497 & 1 other
2R	12136010	2R_12136010_DEL [dm3] 2R_16248505_DEL [dm6]	AAA	A	3.055e^-4	0.801	INTRON CngA
X	9502553	X_9502553_SNP [dm3] X_9608520_SNP [dm6]	C	T	3.058e^-4	0.801	SYNONYMOUS_CODING Aats-lys UPSTREAM CG42797 INTRON Aats-lys	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	19585585	2R_19585585_SNP [dm3] 2R_23698062_SNP [dm6]	G	C	3.059e^-4	0.801	UPSTREAM mRpL43 & 1 other DOWNSTREAM CG4091 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	4268108	2L_4268108_SNP [dm3] 2L_4268108_SNP [dm6]	G	T	3.063e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17576481	2R_17576481_SNP [dm3] 2R_21688976_SNP [dm6]	G	A	3.067e^-4	0.801	UTR_5_PRIME CG10307 UPSTREAM CG30285	TF binding site mE1_TFBS_Trl
2L	1922773	2L_1922773_SNP [dm3] 2L_1922773_SNP [dm6]	G	A	3.070e^-4	0.801	INTRON CG7337
X	10256230	X_10256230_SNP [dm3] X_10362197_SNP [dm6]	G	T	3.076e^-4	0.801	INTRON l_1_G0289	TF binding site mE1_TFBS_HSA
2R	14795646	2R_14795646_DEL [dm3] 2R_18908141_DEL [dm6]	GAAAGCTACCTTCTTG...	G	3.081e^-4	0.801	DOWNSTREAM Vha100-3 INTRON sano
2R	18647425	2R_18647425_SNP [dm3] 2R_22759920_SNP [dm6]	A	C	3.082e^-4	0.801	NON_SYNONYMOUS_CODING CG42260 DOWNSTREAM CR30267 INTRON CG42260	TF binding site mE1_TFBS_cad
2L	15341088	2L_15341088_SNP [dm3] 2L_15341088_SNP [dm6]	G	A	3.086e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_sens
2L	5914491	2L_5914491_SNP [dm3] 2L_5914491_SNP [dm6]	T	C	3.088e^-4	0.801	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5899726	2L_5899726_SNP [dm3] 2L_5899726_SNP [dm6]	G	T	3.089e^-4	0.801	DOWNSTREAM CR44579 INTERGENIC
3L	9771814	3L_9771814_SNP [dm3] 3L_9778714_SNP [dm6]	A	G	3.094e^-4	0.801	INTRON CG8177
2R	19076329	2R_19076329_DEL [dm3] 2R_23188806_DEL [dm6]	AA	A	3.094e^-4	0.801	INTRON CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	1551965	2R_1551965_SNP [dm3] 2R_5664460_SNP [dm6]	C	T	3.094e^-4	0.801	INTRON CR45472 EXON CR45472	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	17265156	2R_17265156_SNP [dm3] 2R_21377651_SNP [dm6]	G	A	3.095e^-4	0.801	INTRON cv-2
2L	10621615	2L_10621615_SNP [dm3] 2L_10621615_SNP [dm6]	T	C	3.102e^-4	0.801	INTRON Trim9
2R	12627085	2R_12627085_SNP [dm3] 2R_16739580_SNP [dm6]	T	A	3.102e^-4	0.801	INTERGENIC
X	9760724	X_9760724_SNP [dm3] X_9866691_SNP [dm6]	G	C	3.104e^-4	0.801	SYNONYMOUS_CODING Ser7	TF binding site mE1_TFBS_chinmo
3L	4205315	3L_4205315_SNP [dm3] 3L_4205315_SNP [dm6]	C	T	3.107e^-4	0.801	SYNONYMOUS_CODING CG43367 UPSTREAM CG15005
X	21095963	X_21095963_SNP [dm3] X_21224936_SNP [dm6]	A	G	3.110e^-4	0.801	INTRON CG32521
3L	3483408	3L_3483408_SNP [dm3] 3L_3483408_SNP [dm6]	T	C	3.111e^-4	0.801	DOWNSTREAM CG43074 INTRON CG42324
X	7892359	X_7892359_SNP [dm3] X_7998326_SNP [dm6]	A	G	3.112e^-4	0.801	UPSTREAM Tbh INTRON Tbh
3R	11399481	3R_11399481_SNP [dm3] 3R_15573759_SNP [dm6]	C	G	3.116e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6067295	2L_6067295_SNP [dm3] 2L_6067295_SNP [dm6]	A	T	3.117e^-4	0.801	SYNONYMOUS_CODING CG9147 DOWNSTREAM CG9150	TF binding site mE1_TFBS_inv
2R	19574096	2R_19574096_SNP [dm3] 2R_23686573_SNP [dm6]	G	A	3.119e^-4	0.801	NON_SYNONYMOUS_CODING St3	TF binding site mE1_TFBS_cad
X	12222759	X_12222759_SNP [dm3] X_12328726_SNP [dm6]	T	C	3.126e^-4	0.801	SYNONYMOUS_CODING Ten-a	TF binding site mE1_TFBS_chinmo
3R	14957712	3R_14957712_DEL [dm3] 3R_19131990_DEL [dm6]	CGT	C	3.134e^-4	0.801	UPSTREAM Cyp12a5 DOWNSTREAM CG6040 INTERGENIC
3R	18704320	3R_18704320_SNP [dm3] 3R_22878598_SNP [dm6]	T	A	3.152e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	7056858	3L_7056858_SNP [dm3] 3L_7063758_SNP [dm6]	C	T	3.154e^-4	0.801	INTRON CG8641
3R	11396086	3R_11396086_SNP [dm3] 3R_15570364_SNP [dm6]	T	C	3.156e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	329590	2L_329590_SNP [dm3] 2L_329590_SNP [dm6]	G	A	3.157e^-4	0.801	SYNONYMOUS_CODING CG43755 DOWNSTREAM CG31921 INTRON Plc21C
2L	3003172	2L_3003172_SNP [dm3] 2L_3003172_SNP [dm6]	T	C	3.163e^-4	0.801	INTRON CG17265
3L	11656647	3L_11656647_SNP [dm3] 3L_11663547_SNP [dm6]	T	C	3.163e^-4	0.801	INTRON CG32085
X	9780907	X_9780907_SNP [dm3] X_9886874_SNP [dm6]	A	G	3.166e^-4	0.801	INTERGENIC
2L	4202842	2L_4202842_SNP [dm3] 2L_4202842_SNP [dm6]	T	C	3.169e^-4	0.801	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_chinmo
2L	6761052	2L_6761052_SNP [dm3] 2L_6761052_SNP [dm6]	A	G	3.172e^-4	0.801	SYNONYMOUS_CODING CG11321	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14875711	X_14875711_SNP [dm3] X_14981678_SNP [dm6]	A	G	3.177e^-4	0.801	INTRON eag
3L	18272329	3L_18272329_SNP [dm3] 3L_18279229_SNP [dm6]	C	T	3.183e^-4	0.801	INTERGENIC
2R	2374311	2R_2374311_SNP [dm3] 2R_6486806_SNP [dm6]	A	C	3.184e^-4	0.801	INTERGENIC
3L	16454029	3L_16454029_SNP [dm3] 3L_16460929_SNP [dm6]	G	C	3.184e^-4	0.801	INTRON CG33158
2R	20348164	2R_20348164_SNP [dm3] 2R_24460641_SNP [dm6]	G	C	3.186e^-4	0.801	INTRON CG13579
2L	14545691	2L_14545691_SNP [dm3] 2L_14545691_SNP [dm6]	T	G	3.186e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14334013	X_14334013_SNP [dm3] X_14439980_SNP [dm6]	A	G	3.192e^-4	0.801	INTRON dpr8	TF binding site mE1_TFBS_chinmo
3R	3110273	3R_3110273_SNP [dm3] 3R_7284551_SNP [dm6]	G	T	3.204e^-4	0.801	DOWNSTREAM CR44333 INTRON rn
3L	5283780	3L_5283780_SNP [dm3] 3L_5290680_SNP [dm6]	T	A	3.208e^-4	0.801	INTERGENIC
2L	21964961	2L_21964961_SNP [dm3] 2L_21964961_SNP [dm6]	C	T	3.211e^-4	0.801	INTERGENIC
2L	9363096	2L_9363096_SNP [dm3] 2L_9363096_SNP [dm6]	G	A	3.216e^-4	0.801	INTERGENIC
3L	7764876	3L_7764876_SNP [dm3] 3L_7771776_SNP [dm6]	T	C	3.217e^-4	0.801	INTRON Clk	regulatory region REDfly_CRMs
2L	13787930	2L_13787930_SNP [dm3] 2L_13787930_SNP [dm6]	A	G	3.217e^-4	0.801	SYNONYMOUS_CODING CG31731	TF binding site mE1_TFBS_sens
3L	7520687	3L_7520687_SNP [dm3] 3L_7527587_SNP [dm6]	C	G	3.219e^-4	0.801	UTR_3_PRIME ltl	TF binding site BDTNP1_TFBS_dl
2L	5704023	2L_5704023_SNP [dm3] 2L_5704023_SNP [dm6]	C	A	3.226e^-4	0.801	INTERGENIC
2R	6449239	2R_6449239_SNP [dm3] 2R_10561734_SNP [dm6]	G	A	3.236e^-4	0.801	UTR_5_PRIME psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	27345046	3R_27345046_SNP [dm3] 3R_31519324_SNP [dm6]	A	C	3.238e^-4	0.801	DOWNSTREAM CR45573 INTERGENIC
2R	17445084	2R_17445084_SNP [dm3] 2R_21557579_SNP [dm6]	T	C	3.239e^-4	0.801	SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18927082	3R_18927082_SNP [dm3] 3R_23101360_SNP [dm6]	C	A	3.241e^-4	0.801	DOWNSTREAM CG6738 INTRON CG13830
3R	25346035	3R_25346035_SNP [dm3] 3R_29520313_SNP [dm6]	C	T	3.241e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	13918858	X_13918858_SNP [dm3] X_14024825_SNP [dm6]	C	A	3.246e^-4	0.801	DOWNSTREAM tRNA:S774:12Ec & 1 other INTERGENIC
X	13855690	X_13855690_SNP [dm3] X_13961657_SNP [dm6]	T	A	3.250e^-4	0.801	INTRON mamo
2R	9151251	2R_9151251_SNP [dm3] 2R_13263746_SNP [dm6]	C	A	3.253e^-4	0.801	INTRON CG42319
2R	17277035	2R_17277035_SNP [dm3] 2R_21389530_SNP [dm6]	C	T	3.254e^-4	0.801	NON_SYNONYMOUS_CODING Acox57D-d DOWNSTREAM Acox57D-p
2L	4528323	2L_4528323_SNP [dm3] 2L_4528323_SNP [dm6]	G	T	3.258e^-4	0.801	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7808865	2L_7808865_SNP [dm3] 2L_7808865_SNP [dm6]	G	A	3.259e^-4	0.801	INTRON cdc14	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6465703	3L_6465703_SNP [dm3] 3L_6472603_SNP [dm6]	C	G	3.261e^-4	0.801	INTRON CG42747	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5545525	2L_5545525_SNP [dm3] 2L_5545525_SNP [dm6]	A	G	3.264e^-4	0.801	UTR_3_PRIME Lam	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
2R	18177396	2R_18177396_SNP [dm3] 2R_22289891_SNP [dm6]	C	T	3.265e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14571771	2R_14571771_SNP [dm3] 2R_18684266_SNP [dm6]	A	G	3.270e^-4	0.801	UTR_3_PRIME CG44433 UPSTREAM CG44434 & 1 other
3L	11248639	3L_11248639_INS [dm3] 3L_11255539_INS [dm6]	A	AC	3.276e^-4	0.801	UTR_3_PRIME scyl DOWNSTREAM scyl	TF binding site BDTNP1_TFBS_dl
3L	16741409	3L_16741409_SNP [dm3] 3L_16748309_SNP [dm6]	C	G	3.276e^-4	0.801	INTERGENIC
2R	11757005	2R_11757005_SNP [dm3] 2R_15869500_SNP [dm6]	G	T	3.277e^-4	0.801	UTR_3_PRIME sli UPSTREAM Rif1 DOWNSTREAM sli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	10221249	2R_10221249_SNP [dm3] 2R_14333744_SNP [dm6]	A	G	3.290e^-4	0.801	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7793650	2L_7793650_SNP [dm3] 2L_7793650_SNP [dm6]	C	G	3.308e^-4	0.801	SYNONYMOUS_CODING LKR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14571682	2R_14571682_SNP [dm3] 2R_18684177_SNP [dm6]	G	C	3.314e^-4	0.801	UTR_5_PRIME CG44435 & 1 other DOWNSTREAM CG44433
2R	15449752	2R_15449752_SNP [dm3] 2R_19562247_SNP [dm6]	C	A	3.314e^-4	0.801	INTRON sm
3R	25065425	3R_25065425_SNP [dm3] 3R_29239703_SNP [dm6]	T	C	3.315e^-4	0.801	NON_SYNONYMOUS_CODING CG31427 UPSTREAM CG11951 DOWNSTREAM CG31445
3R	26578309	3R_26578309_DEL [dm3] 3R_30752587_DEL [dm6]	TGAAC	G	3.319e^-4	0.801	INTERGENIC
X	5907869	X_5907869_SNP [dm3] X_6013836_SNP [dm6]	T	C	3.321e^-4	0.801	UPSTREAM mab-21 INTRON CR44499	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	14106341	2R_14106341_SNP [dm3] 2R_18218836_SNP [dm6]	G	C	3.326e^-4	0.801	INTERGENIC
2L	15734576	2L_15734576_SNP [dm3] 2L_15734576_SNP [dm6]	C	A	3.326e^-4	0.801	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	25296079	3R_25296079_SNP [dm3] 3R_29470357_SNP [dm6]	A	C	3.331e^-4	0.801	INTRON Ptp99A
2R	17277030	2R_17277030_SNP [dm3] 2R_21389525_SNP [dm6]	G	A	3.332e^-4	0.801	SYNONYMOUS_CODING Acox57D-d DOWNSTREAM Acox57D-p
X	6435933	X_6435933_SNP [dm3] X_6541900_SNP [dm6]	T	A	3.334e^-4	0.801	INTRON CG34417
X	6435974	X_6435974_SNP [dm3] X_6541941_SNP [dm6]	A	C	3.335e^-4	0.801	INTRON CG34417
2L	9196116	2L_9196116_SNP [dm3] 2L_9196116_SNP [dm6]	C	G	3.337e^-4	0.801	INTRON tai
2L	329494	2L_329494_SNP [dm3] 2L_329494_SNP [dm6]	A	G	3.341e^-4	0.801	SYNONYMOUS_CODING CG43755 DOWNSTREAM CG31921 INTRON Plc21C
X	15502219	X_15502219_INS [dm3] X_15608186_INS [dm6]	G	GCCATCCAGCCAGCCAT...	3.341e^-4	0.801	INTRON sog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14470877	3L_14470877_SNP [dm3] 3L_14477777_SNP [dm6]	A	C	3.350e^-4	0.801	INTRON bbg	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	16593127	X_16593127_SNP [dm3] X_16699094_SNP [dm6]	T	A	3.363e^-4	0.801	DOWNSTREAM CG9676 INTRON CG4678
2L	13343142	2L_13343142_SNP [dm3] 2L_13343142_SNP [dm6]	C	G	3.368e^-4	0.801	INTERGENIC
3L	14248121	3L_14248121_SNP [dm3] 3L_14255021_SNP [dm6]	T	C	3.370e^-4	0.801	INTERGENIC
2R	17931670	2R_17931670_SNP [dm3] 2R_22044165_SNP [dm6]	G	A	3.372e^-4	0.801	INTERGENIC
2R	13640125	2R_13640125_SNP [dm3] 2R_17752620_SNP [dm6]	A	C	3.373e^-4	0.801	SYNONYMOUS_CODING CG5002 DOWNSTREAM CG6385	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8048660	3L_8048660_SNP [dm3] 3L_8055560_SNP [dm6]	T	A	3.387e^-4	0.801	INTRON bip1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12051700	2L_12051700_SNP [dm3] 2L_12051700_SNP [dm6]	A	C	3.394e^-4	0.801	UTR_3_PRIME CG14945 DOWNSTREAM JhI-21
X	14863182	X_14863182_SNP [dm3] X_14969149_SNP [dm6]	T	C	3.398e^-4	0.801	INTRON eag
2R	6700489	2R_6700489_SNP [dm3] 2R_10812984_SNP [dm6]	T	C	3.402e^-4	0.801	UTR_5_PRIME CG12341 UPSTREAM CG7222 DOWNSTREAM mms4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	19582778	2R_19582778_SNP [dm3] 2R_23695255_SNP [dm6]	T	C	3.407e^-4	0.801	DOWNSTREAM angel INTRON CG30183	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7693284	2R_7693284_SNP [dm3] 2R_11805779_SNP [dm6]	C	G	3.408e^-4	0.801	INTRON ths
X	9215756	X_9215756_SNP [dm3] X_9321723_SNP [dm6]	A	G	3.412e^-4	0.801	SYNONYMOUS_CODING c12.2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24945963	3R_24945963_SNP [dm3] 3R_29120241_SNP [dm6]	C	G	3.417e^-4	0.801	INTRON yem	TF binding site mE1_TFBS_chinmo
2L	11138429	2L_11138429_SNP [dm3] 2L_11138429_SNP [dm6]	T	C	3.419e^-4	0.801	SYNONYMOUS_CODING hgo DOWNSTREAM Gyc32E
3L	294180	3L_294180_SNP [dm3] 3L_294180_SNP [dm6]	G	A	3.420e^-4	0.801	INTRON RhoGEF3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	12987003	3R_12987003_SNP [dm3] 3R_17161281_SNP [dm6]	A	T	3.431e^-4	0.801	INTRON Mur89F
3R	24945973	3R_24945973_SNP [dm3] 3R_29120251_SNP [dm6]	C	A	3.435e^-4	0.801	INTRON yem	TF binding site mE1_TFBS_chinmo
2R	12627115	2R_12627115_SNP [dm3] 2R_16739610_SNP [dm6]	C	T	3.435e^-4	0.801	INTERGENIC
2R	8437489	2R_8437489_SNP [dm3] 2R_12549984_SNP [dm6]	A	G	3.437e^-4	0.801	INTRON fra
2R	16246186	2R_16246186_SNP [dm3] 2R_20358681_SNP [dm6]	G	A	3.443e^-4	0.801	INTERGENIC
3L	16331793	3L_16331793_SNP [dm3] 3L_16338693_SNP [dm6]	T	C	3.444e^-4	0.801	UPSTREAM CG4998 INTERGENIC
3L	10916943	3L_10916943_SNP [dm3] 3L_10923843_SNP [dm6]	T	A	3.446e^-4	0.801	INTERGENIC
X	18989306	X_18989306_SNP [dm3] X_19095273_SNP [dm6]	A	G	3.456e^-4	0.801	INTERGENIC
3R	24802036	3R_24802036_SNP [dm3] 3R_28976314_SNP [dm6]	A	T	3.458e^-4	0.801	INTERGENIC
3L	1359753	3L_1359753_SNP [dm3] 3L_1359753_SNP [dm6]	C	T	3.458e^-4	0.801	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24947649	3R_24947649_SNP [dm3] 3R_29121927_SNP [dm6]	G	A	3.466e^-4	0.801	INTRON yem	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	14784375	X_14784375_SNP [dm3] X_14890342_SNP [dm6]	C	T	3.467e^-4	0.801	INTRON Flo2 & 1 other
3R	8737169	3R_8737169_SNP [dm3] 3R_12911447_SNP [dm6]	T	C	3.469e^-4	0.801	UPSTREAM CG10909 INTERGENIC
X	13416868	X_13416868_SNP [dm3] X_13522835_SNP [dm6]	C	T	3.472e^-4	0.801	SYNONYMOUS_CODING Neto	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17865021	2R_17865021_SNP [dm3] 2R_21977516_SNP [dm6]	G	A	3.478e^-4	0.801	SYNONYMOUS_CODING Gr58c DOWNSTREAM Gr58b
X	13996331	X_13996331_SNP [dm3] X_14102298_SNP [dm6]	C	G	3.483e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24922059	3R_24922059_SNP [dm3] 3R_29096337_SNP [dm6]	C	T	3.489e^-4	0.801	INTRON CG11873 EXON CR45030
3L	7874301	3L_7874301_SNP [dm3] 3L_7881201_SNP [dm6]	T	C	3.495e^-4	0.801	INTRON CG32365
2L	8039129	2L_8039129_SNP [dm3] 2L_8039129_SNP [dm6]	A	G	3.503e^-4	0.801	UTR_3_PRIME Cka DOWNSTREAM Cka INTRON CG7367	TF binding site BDTNP1_TFBS_dl
3L	11658029	3L_11658029_SNP [dm3] 3L_11664929_SNP [dm6]	T	C	3.505e^-4	0.801	INTRON CG32085
2R	17103445	2R_17103445_SNP [dm3] 2R_21215940_SNP [dm6]	T	G	3.521e^-4	0.801	UPSTREAM CG4302 INTRON CG15661	TF binding site mE1_TFBS_cad
3R	24952998	3R_24952998_SNP [dm3] 3R_29127276_SNP [dm6]	T	C	3.522e^-4	0.801	SYNONYMOUS_CODING CG11880	TF binding site mE1_TFBS_cad
3R	12379076	3R_12379076_SNP [dm3] 3R_16553354_SNP [dm6]	A	G	3.528e^-4	0.801	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
3L	16744000	3L_16744000_SNP [dm3] 3L_16750900_SNP [dm6]	G	A	3.540e^-4	0.801	INTERGENIC
2L	8845993	2L_8845993_SNP [dm3] 2L_8845993_SNP [dm6]	C	T	3.541e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15201987	2R_15201987_SNP [dm3] 2R_19314482_SNP [dm6]	A	G	3.542e^-4	0.801	INTRON Rgk1
X	11655430	X_11655430_SNP [dm3] X_11761397_SNP [dm6]	A	T	3.551e^-4	0.801	INTRON m	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12241150	2R_12241150_SNP [dm3] 2R_16353645_SNP [dm6]	C	G	3.555e^-4	0.801	DOWNSTREAM CG30098 INTERGENIC
2L	21064450	2L_21064450_INS [dm3] 2L_21064450_INS [dm6]	C	CTAC	3.557e^-4	0.801	INTRON CG9265	TF binding site mE1_TFBS_cnc
2L	8998239	2L_8998239_SNP [dm3] 2L_8998239_SNP [dm6]	C	T	3.568e^-4	0.801	SYNONYMOUS_CODING CG18661 UPSTREAM alien & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Ubx
3L	10788121	3L_10788121_SNP [dm3] 3L_10795021_SNP [dm6]	A	C	3.571e^-4	0.801	EXON CR44546
2L	2717327	2L_2717327_DEL [dm3] 2L_2717327_DEL [dm6]	ACCGA	A	3.574e^-4	0.801	INTRON CG31690
2R	8550025	2R_8550025_SNP [dm3] 2R_12662520_SNP [dm6]	T	A	3.577e^-4	0.801	UTR_5_PRIME nemy UPSTREAM nemy INTRON nemy
3L	11095724	3L_11095724_SNP [dm3] 3L_11102624_SNP [dm6]	C	T	3.584e^-4	0.801	NON_SYNONYMOUS_CODING Elo68alpha UPSTREAM Elo68beta DOWNSTREAM CG32071
2R	12127730	2R_12127730_SNP [dm3] 2R_16240225_SNP [dm6]	C	A	3.589e^-4	0.801	NON_SYNONYMOUS_CODING krimp DOWNSTREAM CG15708	TF binding site mE1_TFBS_HSA
2R	17272679	2R_17272679_SNP [dm3] 2R_21385174_SNP [dm6]	C	A	3.590e^-4	0.801	NON_SYNONYMOUS_CODING EfSec UPSTREAM CG10795	TF binding site mE1_TFBS_sens
3L	10987890	3L_10987890_SNP [dm3] 3L_10994790_SNP [dm6]	C	T	3.595e^-4	0.801	INTRON klu
2R	19833183	2R_19833183_SNP [dm3] 2R_23945660_SNP [dm6]	T	C	3.599e^-4	0.801	INTRON Galphas
2R	8437507	2R_8437507_SNP [dm3] 2R_12550002_SNP [dm6]	G	C	3.600e^-4	0.801	INTRON fra
2R	19586335	2R_19586335_SNP [dm3] 2R_23698812_SNP [dm6]	A	C	3.600e^-4	0.801	SYNONYMOUS_CODING mRpL43 UPSTREAM CG30183 DOWNSTREAM CG4091	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	14445691	2R_14445691_SNP [dm3] 2R_18558186_SNP [dm6]	G	A	3.606e^-4	0.801	SYNONYMOUS_CODING GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18926756	3R_18926756_SNP [dm3] 3R_23101034_SNP [dm6]	G	A	3.613e^-4	0.801	DOWNSTREAM CG6738 INTRON CG13830
2L	5907920	2L_5907920_SNP [dm3] 2L_5907920_SNP [dm6]	G	A	3.613e^-4	0.801	INTRON bchs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	18563591	2R_18563591_SNP [dm3] 2R_22676086_SNP [dm6]	C	T	3.620e^-4	0.801	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24953085	3R_24953085_SNP [dm3] 3R_29127363_SNP [dm6]	G	A	3.621e^-4	0.801	SYNONYMOUS_CODING CG11880	TF binding site mE1_TFBS_cad
2R	13328791	2R_13328791_SNP [dm3] 2R_17441286_SNP [dm6]	A	G	3.623e^-4	0.801	INTRON EDTP & 1 other
X	14865013	X_14865013_SNP [dm3] X_14970980_SNP [dm6]	A	G	3.628e^-4	0.801	INTRON eag	TF binding site BDTNP1_TFBS_dl
2R	19593432	2R_19593432_SNP [dm3] 2R_23705909_SNP [dm6]	T	C	3.630e^-4	0.801	SYNONYMOUS_CODING l_2_not DOWNSTREAM l_2_dtl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17861462	2R_17861462_SNP [dm3] 2R_21973957_SNP [dm6]	A	T	3.637e^-4	0.801	INTRON CG9304	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	17086922	2R_17086922_SNP [dm3] 2R_21199417_SNP [dm6]	G	A	3.638e^-4	0.801	UTR_3_PRIME Lapsyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
2R	10221625	2R_10221625_SNP [dm3] 2R_14334120_SNP [dm6]	A	T	3.639e^-4	0.801	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11674504	2R_11674504_SNP [dm3] 2R_15786999_SNP [dm6]	G	A	3.643e^-4	0.801	INTRON Zasp52
2R	19602505	2R_19602505_SNP [dm3] 2R_23714982_SNP [dm6]	C	G	3.647e^-4	0.801	INTRON Sesn
3L	22027811	3L_22027811_DEL [dm3] 3L_22034711_DEL [dm6]	TT	T	3.658e^-4	0.801	UPSTREAM Oct-TyrR INTERGENIC
3L	7520693	3L_7520693_SNP [dm3] 3L_7527593_SNP [dm6]	T	C	3.662e^-4	0.801	UTR_3_PRIME ltl	TF binding site BDTNP1_TFBS_dl
X	12089584	X_12089584_SNP [dm3] X_12195551_SNP [dm6]	A	T	3.665e^-4	0.801	INTRON Ten-a
3L	10721427	3L_10721427_SNP [dm3] 3L_10728327_SNP [dm6]	T	A	3.666e^-4	0.801	INTERGENIC
2R	10276460	2R_10276460_SNP [dm3] 2R_14388955_SNP [dm6]	C	G	3.667e^-4	0.801	INTERGENIC
2R	8550035	2R_8550035_SNP [dm3] 2R_12662530_SNP [dm6]	G	A	3.683e^-4	0.801	UTR_5_PRIME nemy UPSTREAM nemy INTRON nemy
2L	11291266	2L_11291266_SNP [dm3] 2L_11291266_SNP [dm6]	T	G	3.693e^-4	0.801	UPSTREAM CR43409 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16803366	2R_16803366_SNP [dm3] 2R_20915861_SNP [dm6]	T	C	3.709e^-4	0.801	UPSTREAM Rx INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_Trl
3L	14470585	3L_14470585_SNP [dm3] 3L_14477485_SNP [dm6]	C	T	3.713e^-4	0.801	UPSTREAM bbg INTRON bbg	TF binding site mE1_TFBS_Trl
2L	3690202	2L_3690202_SNP [dm3] 2L_3690202_SNP [dm6]	A	G	3.722e^-4	0.801	INTRON CG34340
3R	22115348	3R_22115348_SNP [dm3] 3R_26289626_SNP [dm6]	C	T	3.724e^-4	0.801	INTERGENIC
3L	8568151	3L_8568151_SNP [dm3] 3L_8575051_SNP [dm6]	G	A	3.727e^-4	0.801	SYNONYMOUS_CODING CG6638 DOWNSTREAM rhea	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	2796892	2R_2796892_SNP [dm3] 2R_6909387_SNP [dm6]	G	A	3.728e^-4	0.801	INTRON CG30158
3L	1404293	3L_1404293_SNP [dm3] 3L_1404293_SNP [dm6]	C	T	3.732e^-4	0.801	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	11965511	X_11965511_SNP [dm3] X_12071478_SNP [dm6]	C	T	3.738e^-4	0.801	DOWNSTREAM CG12721 & 1 other INTRON CR43960 & 1 other
2R	15303116	2R_15303116_SNP [dm3] 2R_19415611_SNP [dm6]	A	G	3.754e^-4	0.801	DOWNSTREAM tRNA:S4:56D & 2 others INTRON hts	TF binding site BDTNP1_TFBS_twi
2L	6674968	2L_6674968_SNP [dm3] 2L_6674968_SNP [dm6]	G	A	3.759e^-4	0.801	SYNONYMOUS_CODING cort DOWNSTREAM CG34310 & 1 other	TF binding site mE1_TFBS_chinmo
2L	11139682	2L_11139682_SNP [dm3] 2L_11139682_SNP [dm6]	G	A	3.760e^-4	0.801	INTRON Gyc32E
2L	7595778	2L_7595778_SNP [dm3] 2L_7595778_SNP [dm6]	G	C	3.764e^-4	0.801	INTERGENIC
3L	12230911	3L_12230911_SNP [dm3] 3L_12237811_SNP [dm6]	T	A	3.769e^-4	0.801	INTRON app
3L	14319223	3L_14319223_SNP [dm3] 3L_14326123_SNP [dm6]	C	T	3.772e^-4	0.801	INTRON fz EXON CR45025
3L	16030314	3L_16030314_SNP [dm3] 3L_16037214_SNP [dm6]	A	T	3.779e^-4	0.801	UTR_3_PRIME CG5895	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
X	8509687	X_8509687_SNP [dm3] X_8615654_SNP [dm6]	A	G	3.786e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_inv
2L	10639349	2L_10639349_SNP [dm3] 2L_10639349_SNP [dm6]	A	G	3.793e^-4	0.801	UPSTREAM CG7329 & 1 other EXON CR45351
2R	7709565	2R_7709565_SNP [dm3] 2R_11822060_SNP [dm6]	A	G	3.798e^-4	0.801	INTERGENIC
2R	9527722	2R_9527722_SNP [dm3] 2R_13640217_SNP [dm6]	G	A	3.801e^-4	0.801	INTRON fas
3R	25251949	3R_25251949_SNP [dm3] 3R_29426227_SNP [dm6]	G	A	3.803e^-4	0.801	INTRON Ptp99A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10788124	3L_10788124_SNP [dm3] 3L_10795024_SNP [dm6]	A	G	3.808e^-4	0.801	EXON CR44546
2R	17538406	2R_17538406_SNP [dm3] 2R_21650901_SNP [dm6]	A	G	3.812e^-4	0.801	SYNONYMOUS_CODING CG30284 INTRON CG10082	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17265030	2R_17265030_SNP [dm3] 2R_21377525_SNP [dm6]	C	T	3.814e^-4	0.801	INTRON cv-2
2R	17110392	2R_17110392_SNP [dm3] 2R_21222887_SNP [dm6]	C	A	3.817e^-4	0.801	INTRON ASPP	TF binding site mE1_TFBS_cad
2R	9879467	2R_9879467_SNP [dm3] 2R_13991962_SNP [dm6]	C	T	3.820e^-4	0.801	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	12026139	X_12026139_SNP [dm3] X_12132106_SNP [dm6]	C	T	3.820e^-4	0.801	INTRON Ten-a
2R	18965429	2R_18965429_SNP [dm3] 2R_23077906_SNP [dm6]	G	T	3.820e^-4	0.801	SYNONYMOUS_CODING Art7	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13936365	2R_13936365_INS [dm3] 2R_18048860_INS [dm6]	T	TAATA	3.821e^-4	0.801	UTR_3_PRIME CG34005 & 1 other DOWNSTREAM CG14495 & 1 other	TF binding site mE1_TFBS_bab1
X	6621289	X_6621289_SNP [dm3] X_6727256_SNP [dm6]	A	T	3.821e^-4	0.801	UPSTREAM CG3168 INTRON CG3168	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12241149	2R_12241149_SNP [dm3] 2R_16353644_SNP [dm6]	G	A	3.822e^-4	0.801	DOWNSTREAM CG30098 INTERGENIC
2L	16195322	2L_16195322_SNP [dm3] 2L_16195322_SNP [dm6]	G	C	3.825e^-4	0.801	UPSTREAM CR44734 DOWNSTREAM CR44735 INTERGENIC
3R	23766417	3R_23766417_SNP [dm3] 3R_27940695_SNP [dm6]	G	T	3.828e^-4	0.801	SYNONYMOUS_CODING CG5514	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1103327	3L_1103327_SNP [dm3] 3L_1103327_SNP [dm6]	G	T	3.838e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	8423318	X_8423318_SNP [dm3] X_8529285_SNP [dm6]	G	A	3.849e^-4	0.801	INTRON Nrg & 1 other	TF binding site mE1_TFBS_cad
3R	9284518	3R_9284518_SNP [dm3] 3R_13458796_SNP [dm6]	C	A	3.850e^-4	0.801	INTRON CG14372 & 1 other
3L	16454100	3L_16454100_SNP [dm3] 3L_16461000_SNP [dm6]	T	C	3.853e^-4	0.801	INTRON CG33158
3L	9771813	3L_9771813_SNP [dm3] 3L_9778713_SNP [dm6]	A	G	3.857e^-4	0.801	INTRON CG8177
2L	4141597	2L_4141597_SNP [dm3] 2L_4141597_SNP [dm6]	G	A	3.859e^-4	0.801	INTERGENIC
2R	12853231	2R_12853231_SNP [dm3] 2R_16965726_SNP [dm6]	C	G	3.860e^-4	0.801	DOWNSTREAM CR44376 INTERGENIC
3R	18092589	3R_18092589_SNP [dm3] 3R_22266867_SNP [dm6]	G	C	3.862e^-4	0.801	INTRON SKIP	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19572220	2R_19572220_SNP [dm3] 2R_23684697_SNP [dm6]	T	A	3.864e^-4	0.801	UTR_3_PRIME St3 & 1 other DOWNSTREAM St3 INTRON St3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	7892859	2R_7892859_SNP [dm3] 2R_12005354_SNP [dm6]	T	C	3.869e^-4	0.801	SYNONYMOUS_CODING otk	TF binding site mE1_TFBS_chinmo
2L	9190466	2L_9190466_SNP [dm3] 2L_9190466_SNP [dm6]	T	C	3.882e^-4	0.801	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	18944712	2R_18944712_SNP [dm3] 2R_23057189_SNP [dm6]	C	G	3.885e^-4	0.801	INTRON CG44252
X	14865008	X_14865008_SNP [dm3] X_14970975_SNP [dm6]	C	T	3.886e^-4	0.801	INTRON eag	TF binding site BDTNP1_TFBS_dl
2L	3471366	2L_3471366_SNP [dm3] 2L_3471366_SNP [dm6]	G	A	3.890e^-4	0.801	NON_SYNONYMOUS_CODING CG31776	TF binding site BDTNP1_TFBS_prd
3L	14248159	3L_14248159_SNP [dm3] 3L_14255059_SNP [dm6]	C	A	3.892e^-4	0.801	INTERGENIC
2L	5604488	2L_5604488_DEL [dm3] 2L_5604488_DEL [dm6]	AGTGCTAAA	A	3.895e^-4	0.801	INTRON CG14010
X	5971444	X_5971444_SNP [dm3] X_6077411_SNP [dm6]	T	C	3.902e^-4	0.801	UTR_5_PRIME CG4666
X	8916007	X_8916007_SNP [dm3] X_9021974_SNP [dm6]	G	C	3.903e^-4	0.801	INTRON CR43836 & 1 other	TF binding site mE1_TFBS_HSA
2L	21335552	2L_21335552_SNP [dm3] 2L_21335552_SNP [dm6]	T	A	3.903e^-4	0.801	INTRON dimm
2L	4622951	2L_4622951_SNP [dm3] 2L_4622951_SNP [dm6]	A	T	3.910e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	12732946	2R_12732946_DEL [dm3] 2R_16845441_DEL [dm6]	GG	G	3.912e^-4	0.801	UPSTREAM CR44466 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11095932	3L_11095932_SNP [dm3] 3L_11102832_SNP [dm6]	G	A	3.920e^-4	0.801	DOWNSTREAM CG32071 INTRON Elo68alpha	TF binding site mE1_TFBS_chinmo
2R	17457036	2R_17457036_SNP [dm3] 2R_21569531_SNP [dm6]	C	T	3.925e^-4	0.801	INTRON CG10440	TF binding site mE1_TFBS_HSA
2R	19582815	2R_19582815_SNP [dm3] 2R_23695292_SNP [dm6]	A	C	3.931e^-4	0.801	SYNONYMOUS_CODING CG30183 DOWNSTREAM angel	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8875199	3R_8875199_SNP [dm3] 3R_13049477_SNP [dm6]	T	A	3.932e^-4	0.801	SYNONYMOUS_CODING CG7966 DOWNSTREAM CG31157
2R	5698470	2R_5698470_SNP [dm3] 2R_9810965_SNP [dm6]	A	T	3.935e^-4	0.801	DOWNSTREAM CG1648 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	6672263	2L_6672263_SNP [dm3] 2L_6672263_SNP [dm6]	G	A	3.937e^-4	0.801	NON_SYNONYMOUS_CODING Spn27A INTRON cup & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17855405	2R_17855405_SNP [dm3] 2R_21967900_SNP [dm6]	G	A	3.942e^-4	0.801	SYNONYMOUS_CODING ppk9
2L	21367145	2L_21367145_SNP [dm3] 2L_21367145_SNP [dm6]	A	G	3.945e^-4	0.801	SYNONYMOUS_CODING dtr DOWNSTREAM Gr39b
2R	10344183	2R_10344183_SNP [dm3] 2R_14456678_SNP [dm6]	G	T	3.946e^-4	0.801	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9692470	X_9692470_SNP [dm3] X_9798437_SNP [dm6]	G	T	3.948e^-4	0.801	INTRON CG32698
2L	13681922	2L_13681922_SNP [dm3] 2L_13681922_SNP [dm6]	G	A	3.949e^-4	0.801	INTRON CG31814
X	16593137	X_16593137_SNP [dm3] X_16699104_SNP [dm6]	A	C	3.950e^-4	0.801	DOWNSTREAM CG9676 INTRON CG4678
3L	9969555	3L_9969555_DEL [dm3] 3L_9976455_DEL [dm6]	CGTCTTGC	C	3.951e^-4	0.801	INTRON dpr6
3R	27213325	3R_27213325_SNP [dm3] 3R_31387603_SNP [dm6]	G	A	3.953e^-4	0.801	INTRON CG1607	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	1405591	3L_1405591_SNP [dm3] 3L_1405591_SNP [dm6]	C	G	3.961e^-4	0.801	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	10447924	2L_10447924_SNP [dm3] 2L_10447924_SNP [dm6]	G	A	3.967e^-4	0.801	SYNONYMOUS_CODING loh
2R	19601109	2R_19601109_SNP [dm3] 2R_23713586_SNP [dm6]	A	T	3.989e^-4	0.801	UPSTREAM Sesn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	10848399	3L_10848399_SNP [dm3] 3L_10855299_SNP [dm6]	T	C	3.992e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9282692	3R_9282692_SNP [dm3] 3R_13456970_SNP [dm6]	C	A	3.998e^-4	0.801	SYNONYMOUS_CODING CG14372 INTRON CR17025
X	16592081	X_16592081_SNP [dm3] X_16698048_SNP [dm6]	T	A	4.002e^-4	0.801	INTRON CG4678
X	16533941	X_16533941_INS [dm3] X_16639908_INS [dm6]	G	GTGCAGCGCATG...	4.005e^-4	0.801	UTR_3_PRIME SmG DOWNSTREAM RpS19a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	3084819	2L_3084819_INS [dm3] 2L_3084819_INS [dm6]	A	AA	4.009e^-4	0.801	INTRON toc
X	13640962	X_13640962_SNP [dm3] X_13746929_SNP [dm6]	T	A	4.009e^-4	0.801	INTRON Pdcd4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	16852414	2R_16852414_INS [dm3] 2R_20964909_INS [dm6]	G	ATATA	4.009e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17113027	2R_17113027_SNP [dm3] 2R_21225522_SNP [dm6]	T	C	4.013e^-4	0.801	INTRON ASPP
3L	9771806	3L_9771806_DEL [dm3] 3L_9778706_DEL [dm6]	GATTTG	G	4.014e^-4	0.801	INTRON CG8177
2R	17863937	2R_17863937_SNP [dm3] 2R_21976432_SNP [dm6]	T	C	4.016e^-4	0.801	UPSTREAM Gr58c DOWNSTREAM CG9304 INTERGENIC
2L	7973970	2L_7973970_SNP [dm3] 2L_7973970_SNP [dm6]	T	C	4.016e^-4	0.801	INTRON Snoo
2L	2860978	2L_2860978_SNP [dm3] 2L_2860978_SNP [dm6]	C	T	4.017e^-4	0.801	INTRON CG2991	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens
2R	9084282	2R_9084282_SNP [dm3] 2R_13196777_SNP [dm6]	C	A	4.019e^-4	0.801	INTRON Kdm4B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	9147034	2R_9147034_SNP [dm3] 2R_13259529_SNP [dm6]	G	T	4.024e^-4	0.801	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2R	17116086	2R_17116086_SNP [dm3] 2R_21228581_SNP [dm6]	T	A	4.025e^-4	0.801	INTRON ASPP
X	14848214	X_14848214_SNP [dm3] X_14954181_SNP [dm6]	T	C	4.034e^-4	0.801	UTR_3_PRIME CG9030 UPSTREAM pdgy & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	9771030	3L_9771030_SNP [dm3] 3L_9777930_SNP [dm6]	G	A	4.035e^-4	0.801	INTRON CG8177	TF binding site mE1_TFBS_inv
X	5533482	X_5533482_SNP [dm3] X_5639449_SNP [dm6]	A	G	4.044e^-4	0.801	INTRON CG42492	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
3L	11978838	3L_11978838_SNP [dm3] 3L_11985738_SNP [dm6]	T	C	4.045e^-4	0.801	INTRON CG6938
3L	4025207	3L_4025207_SNP [dm3] 3L_4025207_SNP [dm6]	A	T	4.049e^-4	0.801	UTR_5_PRIME CG11594 INTRON CG11594
2R	18935456	2R_18935456_SNP [dm3] 2R_23047933_SNP [dm6]	C	T	4.053e^-4	0.801	SYNONYMOUS_CODING twi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8885840	2L_8885840_SNP [dm3] 2L_8885840_SNP [dm6]	T	C	4.056e^-4	0.801	DOWNSTREAM CR44415 INTERGENIC
3R	18037700	3R_18037700_SNP [dm3] 3R_22211978_SNP [dm6]	C	T	4.057e^-4	0.801	UTR_5_PRIME Gld2 UPSTREAM Gld2 INTRON SKIP
3R	24802037	3R_24802037_DEL [dm3] 3R_28976315_DEL [dm6]	GA	G	4.062e^-4	0.801	INTERGENIC
3R	24767918	3R_24767918_SNP [dm3] 3R_28942196_SNP [dm6]	T	A	4.066e^-4	0.801	INTRON CG14521
3R	25254178	3R_25254178_SNP [dm3] 3R_29428456_SNP [dm6]	G	A	4.070e^-4	0.801	INTRON Ptp99A
2R	3554713	2R_3554713_SNP [dm3] 2R_7667208_SNP [dm6]	A	C	4.073e^-4	0.801	SYNONYMOUS_CODING CG2064 DOWNSTREAM CG12042
2L	622149	2L_622149_SNP [dm3] 2L_622149_SNP [dm6]	C	T	4.074e^-4	0.801	UPSTREAM lectin-21Cb & 1 other INTERGENIC
X	5907886	X_5907886_SNP [dm3] X_6013853_SNP [dm6]	C	A	4.077e^-4	0.801	UPSTREAM mab-21 INTRON CR44499	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	12127729	2R_12127729_SNP [dm3] 2R_16240224_SNP [dm6]	A	G	4.085e^-4	0.801	NON_SYNONYMOUS_CODING krimp DOWNSTREAM CG15708	TF binding site mE1_TFBS_HSA
3L	10368815	3L_10368815_SNP [dm3] 3L_10375715_SNP [dm6]	C	A	4.089e^-4	0.801	INTERGENIC
2L	5808267	2L_5808267_SNP [dm3] 2L_5808267_SNP [dm6]	C	T	4.095e^-4	0.802	SYNONYMOUS_CODING CG11034 UTR_3_PRIME CG11034	TF binding site mE1_TFBS_cad
3R	15457373	3R_15457373_SNP [dm3] 3R_19631651_SNP [dm6]	G	A	4.100e^-4	0.802	INTRON CG6231
3R	18591705	3R_18591705_SNP [dm3] 3R_22765983_SNP [dm6]	G	T	4.122e^-4	0.805	SYNONYMOUS_CODING CG4721 DOWNSTREAM CG13841 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad
X	5680157	X_5680157_DEL [dm3] X_5786124_DEL [dm6]	AAGCAT	A	4.124e^-4	0.805	SPLICE_SITE_REGION CG42699 INTRON CG42699	TF binding site mE1_TFBS_chinmo
3L	448622	3L_448622_SNP [dm3] 3L_448622_SNP [dm6]	T	G	4.133e^-4	0.805	UPSTREAM klar INTRON klar
3L	9196734	3L_9196734_SNP [dm3] 3L_9203634_SNP [dm6]	A	G	4.135e^-4	0.805	SYNONYMOUS_CODING Slc45-1
3L	11590619	3L_11590619_SNP [dm3] 3L_11597519_SNP [dm6]	G	A	4.145e^-4	0.807	INTRON CG7368
3L	16029728	3L_16029728_SNP [dm3] 3L_16036628_SNP [dm6]	C	T	4.153e^-4	0.807	SYNONYMOUS_CODING CG5895	TF binding site BDTNP1_TFBS_twi
2R	19594354	2R_19594354_INS [dm3] 2R_23706831_INS [dm6]	T	TT	4.159e^-4	0.807	UPSTREAM l_2_tid INTRON l_2_not	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18397477	3R_18397477_SNP [dm3] 3R_22571755_SNP [dm6]	A	G	4.170e^-4	0.807	INTRON CG33110
2L	5895033	2L_5895033_SNP [dm3] 2L_5895033_SNP [dm6]	G	C	4.171e^-4	0.807	INTERGENIC
3R	8949811	3R_8949811_SNP [dm3] 3R_13124089_SNP [dm6]	T	A	4.174e^-4	0.807	UTR_3_PRIME 2mit DOWNSTREAM 2mit INTRON timeout
2R	19583088	2R_19583088_SNP [dm3] 2R_23695565_SNP [dm6]	G	A	4.175e^-4	0.807	SYNONYMOUS_CODING CG30183 DOWNSTREAM angel	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1451984	3R_1451984_SNP [dm3] 3R_5626262_SNP [dm6]	G	A	4.178e^-4	0.807	DOWNSTREAM snoRNA:Me28S-U2134a & 1 other INTERGENIC
3L	8042052	3L_8042052_DEL [dm3] 3L_8048952_DEL [dm6]	TTA	T	4.183e^-4	0.807	INTRON nmo
2L	3291204	2L_3291204_SNP [dm3] 2L_3291204_SNP [dm6]	A	T	4.184e^-4	0.807	DOWNSTREAM CG9664 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	19602537	2R_19602537_INS [dm3] 2R_23715014_INS [dm6]	C	CA	4.193e^-4	0.807	INTRON Sesn
X	6062431	X_6062431_SNP [dm3] X_6168398_SNP [dm6]	C	A	4.196e^-4	0.807	INTRON Ca-alpha1T
X	14863364	X_14863364_SNP [dm3] X_14969331_SNP [dm6]	T	C	4.200e^-4	0.807	INTRON eag
2L	9257830	2L_9257830_SNP [dm3] 2L_9257830_SNP [dm6]	T	A	4.205e^-4	0.807	INTRON Ggamma30A
2R	2490304	2R_2490304_SNP [dm3] 2R_6602799_SNP [dm6]	A	G	4.207e^-4	0.807	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	24819750	3R_24819750_SNP [dm3] 3R_28994028_SNP [dm6]	C	T	4.212e^-4	0.807	INTRON wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19421629	X_19421629_SNP [dm3] X_19527596_SNP [dm6]	C	T	4.230e^-4	0.807	UPSTREAM CoRest INTRON CoRest	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9527797	2R_9527797_SNP [dm3] 2R_13640292_SNP [dm6]	T	A	4.231e^-4	0.807	INTRON fas
X	11535199	X_11535199_SNP [dm3] X_11641166_SNP [dm6]	C	T	4.232e^-4	0.807	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl
2R	10218704	2R_10218704_SNP [dm3] 2R_14331199_SNP [dm6]	C	T	4.238e^-4	0.807	INTRON Shroom
2R	16602511	2R_16602511_SNP [dm3] 2R_20715006_SNP [dm6]	G	A	4.246e^-4	0.807	INTRON dpr
3R	2645042	3R_2645042_SNP [dm3] 3R_6819320_SNP [dm6]	C	G	4.250e^-4	0.807	UPSTREAM tRNA:K5:84ABd DOWNSTREAM 7SLRNA:CR42652 EXON tRNA:CR31485:Psi	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	16760427	2R_16760427_SNP [dm3] 2R_20872922_SNP [dm6]	T	A	4.260e^-4	0.807	INTRON Ipk1	TF binding site mE1_TFBS_cad
3L	6615288	3L_6615288_SNP [dm3] 3L_6622188_SNP [dm6]	A	G	4.262e^-4	0.807	INTERGENIC
X	5699436	X_5699436_DEL [dm3] X_5805403_DEL [dm6]	GA	G	4.264e^-4	0.807	DOWNSTREAM Cpr5C INTERGENIC
X	17519707	X_17519707_SNP [dm3] X_17625674_SNP [dm6]	A	G	4.266e^-4	0.807	INTRON stas	TF binding site BDTNP1_TFBS_dl
3L	16906589	3L_16906589_SNP [dm3] 3L_16913489_SNP [dm6]	C	T	4.266e^-4	0.807	INTRON Lmpt
3L	6937516	3L_6937516_SNP [dm3] 3L_6944416_SNP [dm6]	T	A	4.269e^-4	0.807	UPSTREAM tow INTRON tow	TF binding site mE1_TFBS_Trl
2R	18280168	2R_18280168_SNP [dm3] 2R_22392663_SNP [dm6]	G	T	4.270e^-4	0.807	SYNONYMOUS_CODING CG13506	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5467301	3L_5467301_SNP [dm3] 3L_5474201_SNP [dm6]	C	A	4.272e^-4	0.807	INTERGENIC
2R	19601103	2R_19601103_SNP [dm3] 2R_23713580_SNP [dm6]	A	G	4.280e^-4	0.808	UPSTREAM Sesn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	15668708	X_15668708_SNP [dm3] X_15774675_SNP [dm6]	T	C	4.292e^-4	0.809	SYNONYMOUS_CODING CG43672	TF binding site mE1_TFBS_sens
2L	13640528	2L_13640528_SNP [dm3] 2L_13640528_SNP [dm6]	C	T	4.296e^-4	0.809	INTRON ics	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	16820608	2R_16820608_SNP [dm3] 2R_20933103_SNP [dm6]	T	C	4.298e^-4	0.809	INTRON Rx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19066313	2R_19066313_SNP [dm3] 2R_23178790_SNP [dm6]	A	T	4.310e^-4	0.81	INTRON CG34371	TF binding site BDTNP1_TFBS_twi
3L	7520650	3L_7520650_DEL [dm3] 3L_7527550_DEL [dm6]	ATACATTGA	A	4.321e^-4	0.811	UTR_3_PRIME ltl
X	8876544	X_8876544_SNP [dm3] X_8982511_SNP [dm6]	A	G	4.332e^-4	0.811	INTRON rdgA & 1 other

Missing results

By genomic position
Variant impact
Gene name

mn_Viability phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results