DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.940e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.02433

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	7.0018	0.0302

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2228 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	12820358	X_12820358_SNP [dm3] X_12926325_SNP [dm6]	T	A	3.604e^-7	0.663	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	251358	X_251358_SNP [dm3] X_357325_SNP [dm6]	C	A	1.420e^-6	0.663	INTRON CG32816 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	25248525	3R_25248525_SNP [dm3] 3R_29422803_SNP [dm6]	T	G	1.870e^-6	0.663	INTRON Ptp99A
X	11907867	X_11907867_SNP [dm3] X_12013834_SNP [dm6]	T	C	2.253e^-6	0.663	UPSTREAM regucalcin INTRON regucalcin
X	15385853	X_15385853_SNP [dm3] X_15491820_SNP [dm6]	T	A	2.312e^-6	0.663	INTRON Gmap	TF binding site BDTNP1_TFBS_dl
3R	4875604	3R_4875604_SNP [dm3] 3R_9049882_SNP [dm6]	T	A	2.408e^-6	0.663	UPSTREAM Nmdmc & 1 other INTRON Nmdmc & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	11907922	X_11907922_SNP [dm3] X_12013889_SNP [dm6]	A	T	2.645e^-6	0.663	UPSTREAM regucalcin INTRON regucalcin
2R	12572498	2R_12572498_SNP [dm3] 2R_16684993_SNP [dm6]	T	G	2.829e^-6	0.663	UPSTREAM CG30463 INTRON CG30463
2R	18231661	2R_18231661_SNP [dm3] 2R_22344156_SNP [dm6]	C	T	4.523e^-6	0.681	INTRON Liprin-gamma
2R	12396107	2R_12396107_SNP [dm3] 2R_16508602_SNP [dm6]	G	A	4.628e^-6	0.681	INTRON Sema-2a
3R	4874732	3R_4874732_SNP [dm3] 3R_9049010_SNP [dm6]	A	C	4.650e^-6	0.681	UPSTREAM Nmdmc INTRON Nmdmc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	11856023	X_11856023_SNP [dm3] X_11961990_SNP [dm6]	G	A	4.919e^-6	0.681	INTRON cac
2R	18231652	2R_18231652_SNP [dm3] 2R_22344147_SNP [dm6]	T	G	5.001e^-6	0.681	INTRON Liprin-gamma
2L	9922005	2L_9922005_SNP [dm3] 2L_9922005_SNP [dm6]	C	G	5.084e^-6	0.681	DOWNSTREAM CG4594 & 1 other INTRON CG4592	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	25243054	3R_25243054_SNP [dm3] 3R_29417332_SNP [dm6]	A	C	6.103e^-6	0.72	INTRON Ptp99A
2L	8005476	2L_8005476_SNP [dm3] 2L_8005476_SNP [dm6]	A	G	6.262e^-6	0.72	SYNONYMOUS_CODING Spn28Dc	TF binding site mE1_TFBS_cad
3R	4873741	3R_4873741_SNP [dm3] 3R_9048019_SNP [dm6]	C	A	7.553e^-6	0.72	UPSTREAM Rel & 1 other INTRON Nmdmc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
X	16299961	X_16299961_SNP [dm3] X_16405928_SNP [dm6]	C	T	7.616e^-6	0.72	UPSTREAM CG9981 & 1 other INTRON CG4301
X	12352257	X_12352257_SNP [dm3] X_12458224_SNP [dm6]	G	T	7.963e^-6	0.72	UPSTREAM CG15731 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3181781	3L_3181781_SNP [dm3] 3L_3181781_SNP [dm6]	C	T	8.231e^-6	0.72	NON_SYNONYMOUS_CODING Girdin
3R	22160583	3R_22160583_SNP [dm3] 3R_26334861_SNP [dm6]	A	T	8.452e^-6	0.72	INTRON CG33970
2L	12280905	2L_12280905_SNP [dm3] 2L_12280905_SNP [dm6]	A	C	9.512e^-6	0.72	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	15669386	X_15669386_SNP [dm3] X_15775353_SNP [dm6]	C	G	9.849e^-6	0.72	SYNONYMOUS_CODING CG43672
X	15509970	X_15509970_SNP [dm3] X_15615937_SNP [dm6]	G	C	1.005e^-5	0.72	INTRON sog
3L	13308940	3L_13308940_SNP [dm3] 3L_13315840_SNP [dm6]	T	A	1.014e^-5	0.72	INTERGENIC
2R	17398087	2R_17398087_SNP [dm3] 2R_21510582_SNP [dm6]	T	A	1.086e^-5	0.72	INTRON MESK2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12572527	2R_12572527_SNP [dm3] 2R_16685022_SNP [dm6]	G	A	1.119e^-5	0.72	INTRON CG30463
X	15669389	X_15669389_SNP [dm3] X_15775356_SNP [dm6]	G	T	1.201e^-5	0.72	NON_SYNONYMOUS_CODING CG43672
3L	14677420	3L_14677420_DEL [dm3] 3L_14684320_DEL [dm6]	AGCACAGA	A	1.434e^-5	0.72	UPSTREAM CG5048 INTRON ome
X	260204	X_260204_SNP [dm3] X_366171_SNP [dm6]	A	C	1.435e^-5	0.72	INTRON CG32816 & 1 other EXON yar
3R	4677440	3R_4677440_SNP [dm3] 3R_8851718_SNP [dm6]	C	A	1.564e^-5	0.72	INTRON pyd
2L	19814750	2L_19814750_SNP [dm3] 2L_19814750_SNP [dm6]	C	T	1.568e^-5	0.72	UPSTREAM CG13962 DOWNSTREAM snRNA:U2:38ABa INTRON sick	TF binding site mE1_TFBS_inv
X	19777754	X_19777754_DEL [dm3] X_19883721_DEL [dm6]	TT	T	1.571e^-5	0.72	INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	19814825	2L_19814825_SNP [dm3] 2L_19814825_SNP [dm6]	G	A	1.578e^-5	0.72	UPSTREAM CG13962 DOWNSTREAM snRNA:U2:38ABa INTRON sick	TF binding site mE1_TFBS_inv
X	19541196	X_19541196_SNP [dm3] X_19647163_SNP [dm6]	C	T	1.620e^-5	0.72	UTR_3_PRIME Ranbp21 UPSTREAM Arp10
3R	26357057	3R_26357057_DEL [dm3] 3R_30531335_DEL [dm6]	GA	G	1.651e^-5	0.72	INTRON CR45552 EXON CR45553
3R	10119268	3R_10119268_SNP [dm3] 3R_14293546_SNP [dm6]	G	C	1.653e^-5	0.72	INTRON CG12207
X	286036	X_286036_SNP [dm3] X_392003_SNP [dm6]	G	A	1.660e^-5	0.72	INTRON CG32816 EXON CR44753	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	293501	X_293501_SNP [dm3] X_399468_SNP [dm6]	T	C	1.690e^-5	0.72	INTRON CG32816	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7921226	2R_7921226_DEL [dm3] 2R_12033721_DEL [dm6]	AA	A	1.844e^-5	0.72	UTR_3_PRIME pds5 UPSTREAM CG8321	TF binding site BDTNP1_TFBS_dl
X	248402	X_248402_SNP [dm3] X_354369_SNP [dm6]	T	G	1.856e^-5	0.72	INTRON CG32816	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_cad
X	17730093	X_17730093_SNP [dm3] X_17836060_SNP [dm6]	T	A	1.923e^-5	0.72	INTRON CG6398
X	19730482	X_19730482_SNP [dm3] X_19836449_SNP [dm6]	C	T	1.934e^-5	0.72	SYNONYMOUS_CODING pico	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4873990	3R_4873990_SNP [dm3] 3R_9048268_SNP [dm6]	G	A	1.935e^-5	0.72	UPSTREAM Rel & 1 other INTRON Nmdmc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12332607	X_12332607_SNP [dm3] X_12438574_SNP [dm6]	C	T	1.948e^-5	0.72	INTRON Pkcdelta
X	264409	X_264409_SNP [dm3] X_370376_SNP [dm6]	C	T	1.972e^-5	0.72	NON_SYNONYMOUS_CODING ac INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13952962	2R_13952962_SNP [dm3] 2R_18065457_SNP [dm6]	T	A	1.981e^-5	0.72	INTRON CG34386
X	12610472	X_12610472_SNP [dm3] X_12716439_SNP [dm6]	C	T	2.122e^-5	0.72	INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26812104	3R_26812104_SNP [dm3] 3R_30986382_SNP [dm6]	T	C	2.179e^-5	0.72	INTRON 5-HT7
X	18616629	X_18616629_SNP [dm3] X_18722596_SNP [dm6]	G	A	2.214e^-5	0.72	INTRON CCKLR-17D1
2L	7108648	2L_7108648_SNP [dm3] 2L_7108648_SNP [dm6]	T	G	2.304e^-5	0.72	INTRON Pvf3
3L	13247839	3L_13247839_SNP [dm3] 3L_13254739_SNP [dm6]	G	C	2.331e^-5	0.72	INTRON caps
3L	16694836	3L_16694836_INS [dm3] 3L_16701736_INS [dm6]	A	AGCTCA	2.333e^-5	0.72	INTRON Lasp & 1 other
3L	9160188	3L_9160188_SNP [dm3] 3L_9167088_SNP [dm6]	T	C	2.361e^-5	0.72	INTRON Rdl
X	275273	X_275273_SNP [dm3] X_381240_SNP [dm6]	C	T	2.424e^-5	0.72	INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19814858	2L_19814858_SNP [dm3] 2L_19814858_SNP [dm6]	G	A	2.476e^-5	0.72	UPSTREAM CG13962 DOWNSTREAM snRNA:U2:38ABa INTRON sick	TF binding site mE1_TFBS_inv
3R	22160768	3R_22160768_SNP [dm3] 3R_26335046_SNP [dm6]	G	A	2.495e^-5	0.72	INTRON CG33970
X	276268	X_276268_SNP [dm3] X_382235_SNP [dm6]	A	G	2.498e^-5	0.72	INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4251921	3R_4251921_SNP [dm3] 3R_8426199_SNP [dm6]	T	A	2.523e^-5	0.72	INTRON CG45263
X	3898495	X_3898495_SNP [dm3] X_4004462_SNP [dm6]	A	G	2.541e^-5	0.72	INTERGENIC
3L	3182283	3L_3182283_SNP [dm3] 3L_3182283_SNP [dm6]	A	C	2.565e^-5	0.72	SYNONYMOUS_CODING Girdin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3181383	3L_3181383_SNP [dm3] 3L_3181383_SNP [dm6]	C	A	2.594e^-5	0.72	SYNONYMOUS_CODING Girdin
X	280398	X_280398_SNP [dm3] X_386365_SNP [dm6]	T	G	2.757e^-5	0.72	DOWNSTREAM CR44752 INTRON CG32816
3L	2296432	3L_2296432_SNP [dm3] 3L_2296432_SNP [dm6]	A	T	2.769e^-5	0.72	INTRON MsR2
3L	2296433	3L_2296433_SNP [dm3] 3L_2296433_SNP [dm6]	G	A	2.769e^-5	0.72	INTRON MsR2
X	18893116	X_18893116_SNP [dm3] X_18999083_SNP [dm6]	T	C	2.774e^-5	0.72	INTRON CG43759
X	18796928	X_18796928_SNP [dm3] X_18902895_SNP [dm6]	A	G	2.834e^-5	0.72	INTRON CG7378
X	18880559	X_18880559_DEL [dm3] X_18986526_DEL [dm6]	GG	G	2.834e^-5	0.72	INTRON CG43759	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24461437	3R_24461437_SNP [dm3] 3R_28635715_SNP [dm6]	A	G	2.849e^-5	0.72	UPSTREAM CG10011 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
X	19540031	X_19540031_SNP [dm3] X_19645998_SNP [dm6]	T	A	2.920e^-5	0.72	UTR_5_PRIME Arp10 DOWNSTREAM Ranbp21	TF binding site mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
3R	10837533	3R_10837533_SNP [dm3] 3R_15011811_SNP [dm6]	C	G	2.980e^-5	0.72	INTERGENIC
3R	13945090	3R_13945090_SNP [dm3] 3R_18119368_SNP [dm6]	C	T	3.009e^-5	0.72	INTRON sr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	20329653	3R_20329653_SNP [dm3] 3R_24503931_SNP [dm6]	C	T	3.015e^-5	0.72	INTERGENIC
3R	14167923	3R_14167923_SNP [dm3] 3R_18342201_SNP [dm6]	T	G	3.042e^-5	0.72	INTRON CG15803
3R	22160664	3R_22160664_SNP [dm3] 3R_26334942_SNP [dm6]	G	T	3.099e^-5	0.72	INTRON CG33970
X	16735488	X_16735488_DEL [dm3] X_16841455_DEL [dm6]	AATAATCAAAGCGCATTTAA...	G	3.122e^-5	0.72	INTRON RSG7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15385824	X_15385824_SNP [dm3] X_15491791_SNP [dm6]	A	G	3.151e^-5	0.72	INTRON Gmap	TF binding site BDTNP1_TFBS_dl
2L	5838672	2L_5838672_SNP [dm3] 2L_5838672_SNP [dm6]	A	T	3.160e^-5	0.72	INTRON TrissinR
X	14292594	X_14292594_INS [dm3] X_14398561_INS [dm6]	T	TT	3.200e^-5	0.72	INTRON dpr8
3R	15100098	3R_15100098_SNP [dm3] 3R_19274376_SNP [dm6]	A	C	3.206e^-5	0.72	INTERGENIC
X	12331979	X_12331979_SNP [dm3] X_12437946_SNP [dm6]	A	T	3.265e^-5	0.72	INTRON Pkcdelta
3L	869893	3L_869893_SNP [dm3] 3L_869893_SNP [dm6]	T	A	3.476e^-5	0.72	INTRON CG12502	TF binding site mE1_TFBS_chinmo
3R	12919228	3R_12919228_SNP [dm3] 3R_17093506_SNP [dm6]	A	G	3.477e^-5	0.72	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	242138	X_242138_SNP [dm3] X_348105_SNP [dm6]	A	T	3.508e^-5	0.72	SYNONYMOUS_CODING CG3777 INTRON CG32816
X	2892957	X_2892957_SNP [dm3] X_2998924_SNP [dm6]	G	T	3.529e^-5	0.72	INTRON kirre
X	12352306	X_12352306_SNP [dm3] X_12458273_SNP [dm6]	G	A	3.544e^-5	0.72	UPSTREAM CG15731 INTERGENIC
X	15385770	X_15385770_SNP [dm3] X_15491737_SNP [dm6]	A	T	3.567e^-5	0.72	INTRON Gmap	TF binding site BDTNP1_TFBS_dl
X	12610642	X_12610642_SNP [dm3] X_12716609_SNP [dm6]	A	T	3.612e^-5	0.72	INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6175527	2L_6175527_SNP [dm3] 2L_6175527_SNP [dm6]	A	C	3.638e^-5	0.72	INTERGENIC
X	12820264	X_12820264_SNP [dm3] X_12926231_SNP [dm6]	G	T	3.672e^-5	0.72	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	12585785	2R_12585785_SNP [dm3] 2R_16698280_SNP [dm6]	T	G	3.677e^-5	0.72	INTRON CG30463
X	18291043	X_18291043_SNP [dm3] X_18397010_SNP [dm6]	C	A	3.735e^-5	0.72	INTRON CG32549	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22160753	3R_22160753_SNP [dm3] 3R_26335031_SNP [dm6]	C	T	3.750e^-5	0.72	INTRON CG33970
3R	22160770	3R_22160770_SNP [dm3] 3R_26335048_SNP [dm6]	G	A	3.751e^-5	0.72	INTRON CG33970
3R	22160652	3R_22160652_SNP [dm3] 3R_26334930_SNP [dm6]	A	T	3.850e^-5	0.72	INTRON CG33970
3R	17455886	3R_17455886_SNP [dm3] 3R_21630164_SNP [dm6]	T	G	3.897e^-5	0.72	INTRON E2f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	19817489	2L_19817489_SNP [dm3] 2L_19817489_SNP [dm6]	G	A	3.907e^-5	0.72	DOWNSTREAM snRNA:U5:38ABb INTRON sick	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	251323	X_251323_SNP [dm3] X_357290_SNP [dm6]	T	C	3.914e^-5	0.72	INTRON CG32816 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	18291063	X_18291063_SNP [dm3] X_18397030_SNP [dm6]	C	A	3.956e^-5	0.72	INTRON CG32549	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11867112	2R_11867112_SNP [dm3] 2R_15979607_SNP [dm6]	C	T	4.017e^-5	0.72	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18291046	X_18291046_SNP [dm3] X_18397013_SNP [dm6]	A	T	4.030e^-5	0.72	INTRON CG32549	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18291062	X_18291062_SNP [dm3] X_18397029_SNP [dm6]	C	G	4.030e^-5	0.72	INTRON CG32549	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6175505	2L_6175505_INS [dm3] 2L_6175505_INS [dm6]	GA	TCG	4.087e^-5	0.72	INTERGENIC
X	282271	X_282271_SNP [dm3] X_388238_SNP [dm6]	G	C	4.103e^-5	0.72	INTRON CG32816	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2296428	3L_2296428_SNP [dm3] 3L_2296428_SNP [dm6]	A	G	4.109e^-5	0.72	INTRON MsR2
2R	13952745	2R_13952745_SNP [dm3] 2R_18065240_SNP [dm6]	A	G	4.115e^-5	0.72	INTRON CG34386
X	15385751	X_15385751_SNP [dm3] X_15491718_SNP [dm6]	T	A	4.160e^-5	0.72	INTRON Gmap	TF binding site BDTNP1_TFBS_dl
X	15385688	X_15385688_SNP [dm3] X_15491655_SNP [dm6]	A	T	4.258e^-5	0.72	INTRON Gmap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16525779	X_16525779_SNP [dm3] X_16631746_SNP [dm6]	A	G	4.258e^-5	0.72	UPSTREAM CR45001 INTRON Rok & 1 other	TF binding site mE1_TFBS_inv
X	3898476	X_3898476_SNP [dm3] X_4004443_SNP [dm6]	C	A	4.280e^-5	0.72	INTERGENIC
3L	2296416	3L_2296416_SNP [dm3] 3L_2296416_SNP [dm6]	C	T	4.306e^-5	0.72	INTRON MsR2
X	1358858	X_1358858_SNP [dm3] X_1464825_SNP [dm6]	T	C	4.497e^-5	0.72	SYNONYMOUS_CODING O-fut2 UPSTREAM Ns3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4878199	3R_4878199_SNP [dm3] 3R_9052477_SNP [dm6]	T	A	4.590e^-5	0.72	UPSTREAM Kdm2 DOWNSTREAM Mst85C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	10845051	2L_10845051_SNP [dm3] 2L_10845051_SNP [dm6]	A	G	4.595e^-5	0.72	UPSTREAM CG17140 DOWNSTREAM Porin2 INTRON CG17139 & 1 other
X	286373	X_286373_SNP [dm3] X_392340_SNP [dm6]	C	A	4.628e^-5	0.72	INTRON CG32816 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21065702	2L_21065702_SNP [dm3] 2L_21065702_SNP [dm6]	C	A	4.646e^-5	0.72	INTRON CG9265
X	15509930	X_15509930_DEL [dm3] X_15615897_DEL [dm6]	TTAATTGGCTGCGTGCGAGC...	C	4.672e^-5	0.72	INTRON sog
2L	7500869	2L_7500869_SNP [dm3] 2L_7500869_SNP [dm6]	T	A	4.742e^-5	0.72	SYNONYMOUS_CODING RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	22160802	3R_22160802_SNP [dm3] 3R_26335080_SNP [dm6]	A	T	4.752e^-5	0.72	INTRON CG33970
3L	13309065	3L_13309065_SNP [dm3] 3L_13315965_SNP [dm6]	C	T	4.809e^-5	0.72	INTERGENIC
3L	13012715	3L_13012715_DEL [dm3] 3L_13019615_DEL [dm6]	CC	C	4.815e^-5	0.72	UTR_3_PRIME ste14 UPSTREAM CR45445 DOWNSTREAM AdenoK & 1 other
X	3898497	X_3898497_SNP [dm3] X_4004464_SNP [dm6]	A	G	4.825e^-5	0.72	INTERGENIC
X	15385768	X_15385768_SNP [dm3] X_15491735_SNP [dm6]	C	A	4.845e^-5	0.72	INTRON Gmap	TF binding site BDTNP1_TFBS_dl
3L	2529116	3L_2529116_SNP [dm3] 3L_2529116_SNP [dm6]	A	G	4.858e^-5	0.72	INTRON Spn
X	17937314	X_17937314_SNP [dm3] X_18043281_SNP [dm6]	T	C	4.859e^-5	0.72	UPSTREAM CG15373 INTRON Sh
X	18620071	X_18620071_SNP [dm3] X_18726038_SNP [dm6]	T	C	4.874e^-5	0.72	SYNONYMOUS_CODING CCKLR-17D1 UPSTREAM CG42302	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	2759447	3L_2759447_SNP [dm3] 3L_2759447_SNP [dm6]	A	G	4.878e^-5	0.72	INTRON Mrtf
3L	14271975	3L_14271975_SNP [dm3] 3L_14278875_SNP [dm6]	A	G	5.013e^-5	0.735	INTRON fz	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14494961	X_14494961_SNP [dm3] X_14600928_SNP [dm6]	G	A	5.115e^-5	0.738	INTRON CG9413
X	15509967	X_15509967_DEL [dm3] X_15615934_DEL [dm6]	AA	A	5.116e^-5	0.738	INTRON sog
3R	10119255	3R_10119255_SNP [dm3] 3R_14293533_SNP [dm6]	T	A	5.167e^-5	0.74	INTRON CG12207
3R	22160752	3R_22160752_SNP [dm3] 3R_26335030_SNP [dm6]	C	T	5.311e^-5	0.748	INTRON CG33970
2R	11530225	2R_11530225_SNP [dm3] 2R_15642720_SNP [dm6]	C	T	5.336e^-5	0.748	INTRON CG42524
2R	15068644	2R_15068644_SNP [dm3] 2R_19181139_SNP [dm6]	T	C	5.364e^-5	0.748	INTRON hppy
X	12332603	X_12332603_SNP [dm3] X_12438570_SNP [dm6]	G	A	5.455e^-5	0.748	INTRON Pkcdelta
X	18620068	X_18620068_SNP [dm3] X_18726035_SNP [dm6]	A	G	5.502e^-5	0.748	SYNONYMOUS_CODING CCKLR-17D1 UPSTREAM CG42302	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	7699423	2L_7699423_SNP [dm3] 2L_7699423_SNP [dm6]	G	C	5.578e^-5	0.748	SYNONYMOUS_CODING Tep2	TF binding site mE1_TFBS_sens
3R	16005302	3R_16005302_SNP [dm3] 3R_20179580_SNP [dm6]	A	G	5.764e^-5	0.748	INTERGENIC
2R	7120967	2R_7120967_SNP [dm3] 2R_11233462_SNP [dm6]	T	G	5.803e^-5	0.748	SYNONYMOUS_CODING CG13218 UPSTREAM metro & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_Trl
X	253031	X_253031_SNP [dm3] X_358998_SNP [dm6]	T	A	5.850e^-5	0.748	INTRON CG32816 & 1 other	regulatory region REDfly_CRMs
2L	12280760	2L_12280760_SNP [dm3] 2L_12280760_SNP [dm6]	T	C	5.884e^-5	0.748	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	8925219	X_8925219_DEL [dm3] X_9031186_DEL [dm6]	TT	C	5.901e^-5	0.748	INTRON CR43836 & 1 other
X	13035596	X_13035596_SNP [dm3] X_13141563_SNP [dm6]	C	T	5.904e^-5	0.748	INTRON CG32645
2R	7721450	2R_7721450_SNP [dm3] 2R_11833945_SNP [dm6]	A	C	5.936e^-5	0.748	INTRON Sobp
X	19540719	X_19540719_SNP [dm3] X_19646686_SNP [dm6]	T	A	6.029e^-5	0.748	UTR_3_PRIME Ranbp21 UPSTREAM Arp10	TF binding site mE1_TFBS_HSA
X	3898543	X_3898543_SNP [dm3] X_4004510_SNP [dm6]	A	C	6.068e^-5	0.748	INTERGENIC
3R	24922480	3R_24922480_SNP [dm3] 3R_29096758_SNP [dm6]	G	A	6.149e^-5	0.748	DOWNSTREAM CR45030 INTRON CG11873
3R	24923593	3R_24923593_SNP [dm3] 3R_29097871_SNP [dm6]	C	A	6.149e^-5	0.748	INTRON CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20693762	X_20693762_SNP [dm3] X_20822735_SNP [dm6]	A	C	6.170e^-5	0.748	INTRON shakB & 1 other
X	273699	X_273699_SNP [dm3] X_379666_SNP [dm6]	T	A	6.191e^-5	0.748	INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	3960166	2L_3960166_SNP [dm3] 2L_3960166_SNP [dm6]	T	A	6.230e^-5	0.748	INTRON fred
2L	11881357	2L_11881357_SNP [dm3] 2L_11881357_SNP [dm6]	C	T	6.236e^-5	0.748	INTRON Pde1c	TF binding site mE1_TFBS_inv
3L	14095896	3L_14095896_SNP [dm3] 3L_14102796_SNP [dm6]	T	A	6.237e^-5	0.748	DOWNSTREAM Sox21a INTERGENIC
2L	11687798	2L_11687798_SNP [dm3] 2L_11687798_SNP [dm6]	T	G	6.263e^-5	0.748	INTERGENIC
3R	24089157	3R_24089157_SNP [dm3] 3R_28263435_SNP [dm6]	T	G	6.287e^-5	0.748	DOWNSTREAM CG43124 INTRON CG43125
2L	5839759	2L_5839759_SNP [dm3] 2L_5839759_SNP [dm6]	G	A	6.345e^-5	0.748	INTRON TrissinR
3R	3970541	3R_3970541_SNP [dm3] 3R_8144819_SNP [dm6]	C	A	6.375e^-5	0.748	INTERGENIC
3L	12552379	3L_12552379_SNP [dm3] 3L_12559279_SNP [dm6]	C	T	6.408e^-5	0.748	INTRON sowah
3L	14095870	3L_14095870_SNP [dm3] 3L_14102770_SNP [dm6]	A	T	6.501e^-5	0.748	DOWNSTREAM Sox21a INTERGENIC
3L	764254	3L_764254_SNP [dm3] 3L_764254_SNP [dm6]	T	C	6.528e^-5	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	10377097	2L_10377097_SNP [dm3] 2L_10377097_SNP [dm6]	A	G	6.584e^-5	0.748	INTRON dpr19	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	19540102	X_19540102_SNP [dm3] X_19646069_SNP [dm6]	C	A	6.632e^-5	0.748	START_GAINED Arp10 UTR_5_PRIME Arp10 UPSTREAM Arp10 DOWNSTREAM Ranbp21	TF binding site mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
2L	4683311	2L_4683311_SNP [dm3] 2L_4683311_SNP [dm6]	A	C	6.643e^-5	0.748	SYNONYMOUS_CODING Bsg25A INTRON CG11929	TF binding site BDTNP1_TFBS_dl
X	19725775	X_19725775_SNP [dm3] X_19831742_SNP [dm6]	A	G	6.673e^-5	0.748	UTR_3_PRIME pico	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14638560	3R_14638560_SNP [dm3] 3R_18812838_SNP [dm6]	G	A	6.778e^-5	0.748	INTRON CG18208
3R	26808987	3R_26808987_INS [dm3] 3R_30983265_INS [dm6]	A	ACACGCTCAAAAGTTCAAGC...	6.797e^-5	0.748	INTRON 5-HT7	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12396035	2R_12396035_SNP [dm3] 2R_16508530_SNP [dm6]	T	C	6.941e^-5	0.748	INTRON Sema-2a
2L	4747763	2L_4747763_SNP [dm3] 2L_4747763_SNP [dm6]	A	G	7.008e^-5	0.748	INTRON CG15630
2R	12272948	2R_12272948_SNP [dm3] 2R_16385443_SNP [dm6]	C	G	7.016e^-5	0.748	UTR_3_PRIME CG43187
X	2528712	X_2528712_SNP [dm3] X_2634679_SNP [dm6]	C	T	7.054e^-5	0.748	INTRON sgg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3L	9384663	3L_9384663_SNP [dm3] 3L_9391563_SNP [dm6]	C	T	7.096e^-5	0.748	INTRON CG4080	TF binding site BDTNP1_TFBS_dl
X	19542228	X_19542228_SNP [dm3] X_19648195_SNP [dm6]	G	A	7.100e^-5	0.748	SYNONYMOUS_CODING Ranbp21	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7917464	2R_7917464_SNP [dm3] 2R_12029959_SNP [dm6]	C	T	7.126e^-5	0.748	SYNONYMOUS_CODING pds5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22160782	3R_22160782_SNP [dm3] 3R_26335060_SNP [dm6]	T	A	7.147e^-5	0.748	INTRON CG33970
2L	15989792	2L_15989792_SNP [dm3] 2L_15989792_SNP [dm6]	G	T	7.245e^-5	0.748	EXON CR43412	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3002339	3L_3002339_INS [dm3] 3L_3002339_INS [dm6]	A	AA	7.262e^-5	0.748	INTRON FMRFaR
3R	10119233	3R_10119233_SNP [dm3] 3R_14293511_SNP [dm6]	C	T	7.271e^-5	0.748	INTRON CG12207
X	18893155	X_18893155_SNP [dm3] X_18999122_SNP [dm6]	T	C	7.280e^-5	0.748	INTRON CG43759
2R	15272385	2R_15272385_SNP [dm3] 2R_19384880_SNP [dm6]	T	G	7.311e^-5	0.748	SYNONYMOUS_CODING CG10073
3R	15500614	3R_15500614_SNP [dm3] 3R_19674892_SNP [dm6]	A	T	7.318e^-5	0.748	INTRON Naam
2R	14189315	2R_14189315_SNP [dm3] 2R_18301810_SNP [dm6]	A	C	7.397e^-5	0.748	INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12396224	2R_12396224_SNP [dm3] 2R_16508719_SNP [dm6]	A	C	7.506e^-5	0.748	INTRON Sema-2a
3R	25248490	3R_25248490_SNP [dm3] 3R_29422768_SNP [dm6]	G	T	7.655e^-5	0.748	INTRON Ptp99A
3L	11304797	3L_11304797_SNP [dm3] 3L_11311697_SNP [dm6]	T	A	7.724e^-5	0.748	UPSTREAM CG7573 INTERGENIC
3L	869891	3L_869891_SNP [dm3] 3L_869891_SNP [dm6]	A	G	7.737e^-5	0.748	INTRON CG12502	TF binding site mE1_TFBS_chinmo
3R	22160698	3R_22160698_SNP [dm3] 3R_26334976_SNP [dm6]	A	T	7.754e^-5	0.748	INTRON CG33970
X	19541363	X_19541363_SNP [dm3] X_19647330_SNP [dm6]	G	C	7.834e^-5	0.748	UTR_3_PRIME Ranbp21	TF binding site mE1_TFBS_chinmo
X	18619376	X_18619376_SNP [dm3] X_18725343_SNP [dm6]	G	T	7.904e^-5	0.748	SYNONYMOUS_CODING CG42302 INTRON CCKLR-17D1
2L	11880407	2L_11880407_SNP [dm3] 2L_11880407_SNP [dm6]	G	A	7.927e^-5	0.748	INTRON Pde1c
3R	25246416	3R_25246416_SNP [dm3] 3R_29420694_SNP [dm6]	A	G	7.973e^-5	0.748	INTRON Ptp99A	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	13309025	3L_13309025_SNP [dm3] 3L_13315925_SNP [dm6]	A	G	8.095e^-5	0.748	INTERGENIC
X	17945059	X_17945059_SNP [dm3] X_18051026_SNP [dm6]	A	T	8.098e^-5	0.748	INTRON Sh	TF binding site BDTNP1_TFBS_dl
2L	16456429	2L_16456429_SNP [dm3] 2L_16456429_SNP [dm6]	G	A	8.106e^-5	0.748	INTERGENIC	regulatory region REDfly_CRMs
2L	15967108	2L_15967108_SNP [dm3] 2L_15967108_SNP [dm6]	A	G	8.106e^-5	0.748	INTERGENIC
X	284888	X_284888_SNP [dm3] X_390855_SNP [dm6]	C	G	8.113e^-5	0.748	DOWNSTREAM CR44753 INTRON CG32816
2L	8342250	2L_8342250_SNP [dm3] 2L_8342250_SNP [dm6]	T	A	8.248e^-5	0.748	UPSTREAM CG14273 DOWNSTREAM CG14274 INTERGENIC
2R	1933755	2R_1933755_SNP [dm3] 2R_6046250_SNP [dm6]	A	T	8.251e^-5	0.748	UPSTREAM CG34211 DOWNSTREAM CR44130 INTERGENIC
2R	1933756	2R_1933756_SNP [dm3] 2R_6046251_SNP [dm6]	T	G	8.251e^-5	0.748	UPSTREAM CG34211 DOWNSTREAM CR44130 INTERGENIC
3L	14095876	3L_14095876_SNP [dm3] 3L_14102776_SNP [dm6]	T	C	8.289e^-5	0.748	DOWNSTREAM Sox21a INTERGENIC
3R	22160786	3R_22160786_SNP [dm3] 3R_26335064_SNP [dm6]	A	G	8.293e^-5	0.748	INTRON CG33970
2R	2453004	2R_2453004_SNP [dm3] 2R_6565499_SNP [dm6]	C	G	8.317e^-5	0.748	INTRON jing
2L	6550798	2L_6550798_SNP [dm3] 2L_6550798_SNP [dm6]	A	C	8.326e^-5	0.748	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	3686139	2R_3686139_SNP [dm3] 2R_7798634_SNP [dm6]	C	T	8.399e^-5	0.748	SYNONYMOUS_CODING mus205	TF binding site mE1_TFBS_cad
X	3898530	X_3898530_SNP [dm3] X_4004497_SNP [dm6]	A	G	8.403e^-5	0.748	INTERGENIC
3L	10342067	3L_10342067_SNP [dm3] 3L_10348967_SNP [dm6]	C	A	8.408e^-5	0.748	INTRON CR44327
3R	22160824	3R_22160824_SNP [dm3] 3R_26335102_SNP [dm6]	A	G	8.465e^-5	0.748	INTRON CG33970
2L	10703480	2L_10703480_SNP [dm3] 2L_10703480_SNP [dm6]	A	T	8.487e^-5	0.748	UPSTREAM CG6415 INTRON Lip2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12585711	2R_12585711_SNP [dm3] 2R_16698206_SNP [dm6]	A	T	8.493e^-5	0.748	INTRON CG30463
3L	13019640	3L_13019640_SNP [dm3] 3L_13026540_SNP [dm6]	T	G	8.504e^-5	0.748	UPSTREAM Zmynd10 INTERGENIC
2L	16255416	2L_16255416_SNP [dm3] 2L_16255416_SNP [dm6]	A	G	8.719e^-5	0.748	INTRON PRL-1	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2L	17250611	2L_17250611_SNP [dm3] 2L_17250611_SNP [dm6]	C	T	8.727e^-5	0.748	INTRON beat-IIIc	TF binding site mE1_TFBS_HSA mE1_TFBS_run
X	283726	X_283726_SNP [dm3] X_389693_SNP [dm6]	G	A	8.734e^-5	0.748	INTRON CG32816
3R	22160645	3R_22160645_SNP [dm3] 3R_26334923_SNP [dm6]	T	A	8.828e^-5	0.748	INTRON CG33970
X	269381	X_269381_SNP [dm3] X_375348_SNP [dm6]	G	A	8.881e^-5	0.748	INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	10119384	3R_10119384_SNP [dm3] 3R_14293662_SNP [dm6]	G	A	8.891e^-5	0.748	INTRON CG12207
2R	11866912	2R_11866912_SNP [dm3] 2R_15979407_SNP [dm6]	G	T	8.893e^-5	0.748	NON_SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_sens
3R	20986091	3R_20986091_SNP [dm3] 3R_25160369_SNP [dm6]	G	C	8.947e^-5	0.748	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	20864593	3L_20864593_SNP [dm3] 3L_20871493_SNP [dm6]	C	T	8.950e^-5	0.748	INTRON CG32432
X	17274847	X_17274847_SNP [dm3] X_17380814_SNP [dm6]	C	T	8.966e^-5	0.748	INTERGENIC
3R	16898224	3R_16898224_SNP [dm3] 3R_21072502_SNP [dm6]	G	C	8.978e^-5	0.748	SYNONYMOUS_CODING r-l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	253006	X_253006_SNP [dm3] X_358973_SNP [dm6]	G	A	9.079e^-5	0.748	INTRON CG32816 & 1 other	regulatory region REDfly_CRMs
X	20899330	X_20899330_SNP [dm3] X_21028303_SNP [dm6]	C	T	9.135e^-5	0.748	UTR_5_PRIME CG1532 DOWNSTREAM CG1529	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	8340545	2L_8340545_SNP [dm3] 2L_8340545_SNP [dm6]	A	G	9.154e^-5	0.748	INTRON CG14274
X	17937071	X_17937071_SNP [dm3] X_18043038_SNP [dm6]	C	A	9.293e^-5	0.748	INTRON Sh
2L	13910697	2L_13910697_SNP [dm3] 2L_13910697_SNP [dm6]	A	G	9.306e^-5	0.748	INTRON Ance-2	TF binding site mE1_TFBS_cad
3R	22160766	3R_22160766_INS [dm3] 3R_26335044_INS [dm6]	T	TTT	9.342e^-5	0.748	INTRON CG33970
X	335317	X_335317_SNP [dm3] X_441284_SNP [dm6]	G	A	9.380e^-5	0.748	INTRON CG32816	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	9542422	2L_9542422_SNP [dm3] 2L_9542422_SNP [dm6]	G	T	9.507e^-5	0.748	UTR_3_PRIME CG17855 UPSTREAM Cpr30B
X	2887596	X_2887596_SNP [dm3] X_2993563_SNP [dm6]	T	A	9.529e^-5	0.748	INTRON kirre
2R	19283940	2R_19283940_SNP [dm3] 2R_23396417_SNP [dm6]	C	G	9.616e^-5	0.748	UPSTREAM CG3530 DOWNSTREAM CG3520 INTRON CG3530
X	7721557	X_7721557_SNP [dm3] X_7827524_SNP [dm6]	G	T	9.649e^-5	0.748	INTRON CG1402
3R	24923586	3R_24923586_SNP [dm3] 3R_29097864_SNP [dm6]	T	A	9.655e^-5	0.748	SPLICE_SITE_REGION CG11873 INTRON CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24923587	3R_24923587_INS [dm3] 3R_29097865_INS [dm6]	G	GATC	9.655e^-5	0.748	SPLICE_SITE_REGION CG11873 INTRON CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24923624	3R_24923624_SNP [dm3] 3R_29097902_SNP [dm6]	G	T	9.655e^-5	0.748	INTRON CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24923625	3R_24923625_SNP [dm3] 3R_29097903_SNP [dm6]	A	G	9.655e^-5	0.748	INTRON CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24923628	3R_24923628_SNP [dm3] 3R_29097906_SNP [dm6]	C	T	9.655e^-5	0.748	INTRON CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18291111	X_18291111_DEL [dm3] X_18397078_DEL [dm6]	TTT	T	9.692e^-5	0.748	INTRON CG32549	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24459165	3R_24459165_SNP [dm3] 3R_28633443_SNP [dm6]	C	G	9.822e^-5	0.748	INTRON CG10011	TF binding site BDTNP1_TFBS_dl
2L	11880439	2L_11880439_SNP [dm3] 2L_11880439_SNP [dm6]	T	G	9.823e^-5	0.748	INTRON Pde1c
3L	8150418	3L_8150418_SNP [dm3] 3L_8157318_SNP [dm6]	T	G	9.873e^-5	0.748	INTRON CG42445
X	4425768	X_4425768_SNP [dm3] X_4531735_SNP [dm6]	C	T	9.955e^-5	0.748	SYNONYMOUS_CODING CG3556 INTRON CR32773
2L	5839814	2L_5839814_SNP [dm3] 2L_5839814_SNP [dm6]	T	C	1.003e^-4	0.748	INTRON TrissinR
3L	4547655	3L_4547655_SNP [dm3] 3L_4547655_SNP [dm6]	A	G	1.006e^-4	0.748	INTRON CG11357	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	284510	X_284510_SNP [dm3] X_390477_SNP [dm6]	T	A	1.008e^-4	0.748	INTRON CG32816
2R	12585726	2R_12585726_SNP [dm3] 2R_16698221_SNP [dm6]	T	A	1.012e^-4	0.748	INTRON CG30463
3L	1445341	3L_1445341_SNP [dm3] 3L_1445341_SNP [dm6]	G	T	1.017e^-4	0.748	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	1445342	3L_1445342_SNP [dm3] 3L_1445342_SNP [dm6]	C	T	1.017e^-4	0.748	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	18594047	3R_18594047_SNP [dm3] 3R_22768325_SNP [dm6]	G	A	1.019e^-4	0.748	NON_SYNONYMOUS_CODING CG43091 UPSTREAM CG13841 DOWNSTREAM CG43092 INTRON Usp12-46 & 1 other
3L	4943067	3L_4943067_SNP [dm3] 3L_4943067_SNP [dm6]	G	A	1.022e^-4	0.748	INTRON Con
2R	19283111	2R_19283111_SNP [dm3] 2R_23395588_SNP [dm6]	T	A	1.026e^-4	0.748	UPSTREAM CG3530 INTRON CG3530	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	4679846	3R_4679846_SNP [dm3] 3R_8854124_SNP [dm6]	C	A	1.026e^-4	0.748	INTRON pyd	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
2L	6553745	2L_6553745_SNP [dm3] 2L_6553745_SNP [dm6]	T	A	1.029e^-4	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	15862345	X_15862345_SNP [dm3] X_15968312_SNP [dm6]	G	A	1.030e^-4	0.748	INTRON mmd
2L	10845788	2L_10845788_SNP [dm3] 2L_10845788_SNP [dm6]	A	G	1.031e^-4	0.748	UTR_3_PRIME Porin2 UPSTREAM CG17139 & 1 other
3L	16551859	3L_16551859_SNP [dm3] 3L_16558759_SNP [dm6]	C	T	1.040e^-4	0.748	DOWNSTREAM CG4229 INTERGENIC
X	16866702	X_16866702_SNP [dm3] X_16972669_SNP [dm6]	A	G	1.047e^-4	0.748	UTR_3_PRIME CG45002
3L	13731801	3L_13731801_SNP [dm3] 3L_13738701_SNP [dm6]	C	A	1.052e^-4	0.748	INTRON bru-3
2R	9964696	2R_9964696_DEL [dm3] 2R_14077191_DEL [dm6]	GAGGGG	G	1.053e^-4	0.748	INTRON Prosap
2L	4349775	2L_4349775_SNP [dm3] 2L_4349775_SNP [dm6]	C	T	1.057e^-4	0.748	DOWNSTREAM CR44699 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14335563	3R_14335563_SNP [dm3] 3R_18509841_SNP [dm6]	T	C	1.058e^-4	0.748	INTRON fru
3R	5752072	3R_5752072_SNP [dm3] 3R_9926350_SNP [dm6]	A	G	1.061e^-4	0.748	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	1715544	2R_1715544_SNP [dm3] 2R_5828039_SNP [dm6]	C	T	1.063e^-4	0.748	INTRON dpr12
X	3898509	X_3898509_SNP [dm3] X_4004476_SNP [dm6]	A	C	1.076e^-4	0.748	INTERGENIC
3L	14998967	3L_14998967_SNP [dm3] 3L_15005867_SNP [dm6]	A	T	1.079e^-4	0.748	INTRON Reck
3L	14677438	3L_14677438_DEL [dm3] 3L_14684338_DEL [dm6]	CGGC	C	1.083e^-4	0.748	UPSTREAM CG5048 INTRON ome
X	18893227	X_18893227_SNP [dm3] X_18999194_SNP [dm6]	G	T	1.086e^-4	0.748	INTRON CG43759
3R	10159698	3R_10159698_SNP [dm3] 3R_14333976_SNP [dm6]	G	A	1.097e^-4	0.748	INTRON NK7.1
X	3248999	X_3248999_DEL [dm3] X_3354966_DEL [dm6]	TT	T	1.098e^-4	0.748	INTERGENIC
3R	10059186	3R_10059186_SNP [dm3] 3R_14233464_SNP [dm6]	A	G	1.100e^-4	0.748	INTERGENIC
3R	13297275	3R_13297275_SNP [dm3] 3R_17471553_SNP [dm6]	T	C	1.103e^-4	0.748	INTERGENIC
2R	10527786	2R_10527786_SNP [dm3] 2R_14640281_SNP [dm6]	A	C	1.104e^-4	0.748	NON_SYNONYMOUS_CODING CG12862 DOWNSTREAM CG42715	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12765283	3R_12765283_SNP [dm3] 3R_16939561_SNP [dm6]	T	G	1.109e^-4	0.748	INTRON Abd-B	TF binding site mE1_TFBS_cad
3L	16367777	3L_16367777_SNP [dm3] 3L_16374677_SNP [dm6]	G	A	1.110e^-4	0.748	INTRON roq
X	11845452	X_11845452_SNP [dm3] X_11951419_SNP [dm6]	C	T	1.111e^-4	0.748	INTRON cac
2R	15960834	2R_15960834_SNP [dm3] 2R_20073329_SNP [dm6]	T	A	1.117e^-4	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10037587	3R_10037587_SNP [dm3] 3R_14211865_SNP [dm6]	C	A	1.118e^-4	0.748	INTRON Dop1R1
2L	9442551	2L_9442551_SNP [dm3] 2L_9442551_SNP [dm6]	C	T	1.118e^-4	0.748	INTRON numb
X	270817	X_270817_DEL [dm3] X_376784_DEL [dm6]	ACTTTGA	A	1.122e^-4	0.748	UPSTREAM CR44751 INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	14895770	X_14895770_INS [dm3] X_15001737_INS [dm6]	A	AA	1.123e^-4	0.748	INTRON eag
3L	22162264	3L_22162264_SNP [dm3] 3L_22169164_SNP [dm6]	C	T	1.124e^-4	0.748	INTRON olf413	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20693943	X_20693943_SNP [dm3] X_20822916_SNP [dm6]	C	T	1.132e^-4	0.748	INTRON shakB & 1 other
X	3898518	X_3898518_SNP [dm3] X_4004485_SNP [dm6]	T	A	1.135e^-4	0.748	INTERGENIC
X	19360349	X_19360349_SNP [dm3] X_19466316_SNP [dm6]	A	T	1.136e^-4	0.748	INTRON kek5	TF binding site mE1_TFBS_cad
X	268218	X_268218_DEL [dm3] X_374185_DEL [dm6]	GCCGG	G	1.138e^-4	0.748	INTRON CG32816	regulatory region REDfly_CRMs
X	1323791	X_1323791_SNP [dm3] X_1429758_SNP [dm6]	A	G	1.140e^-4	0.748	INTRON futsch	TF binding site mE1_TFBS_chinmo
2L	6171283	2L_6171283_SNP [dm3] 2L_6171283_SNP [dm6]	A	G	1.141e^-4	0.748	INTERGENIC
3R	5724815	3R_5724815_SNP [dm3] 3R_9899093_SNP [dm6]	C	A	1.152e^-4	0.751	INTRON Glut4EF
3R	10006015	3R_10006015_SNP [dm3] 3R_14180293_SNP [dm6]	A	G	1.162e^-4	0.751	SYNONYMOUS_CODING Dop1R1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	5739850	3R_5739850_SNP [dm3] 3R_9914128_SNP [dm6]	G	T	1.166e^-4	0.751	INTRON Glut4EF
X	15669374	X_15669374_SNP [dm3] X_15775341_SNP [dm6]	T	G	1.168e^-4	0.751	NON_SYNONYMOUS_CODING CG43672
2R	14575160	2R_14575160_SNP [dm3] 2R_18687655_SNP [dm6]	C	T	1.171e^-4	0.751	SYNONYMOUS_CODING CG42855 UPSTREAM CG44433 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	22184258	X_22184258_SNP [dm3] X_22782422_SNP [dm6]	C	T	1.181e^-4	0.751	INTRON CR44997
3R	22160890	3R_22160890_SNP [dm3] 3R_26335168_SNP [dm6]	A	G	1.184e^-4	0.751	INTRON CG33970
3L	3204455	3L_3204455_SNP [dm3] 3L_3204455_SNP [dm6]	T	A	1.191e^-4	0.751	UPSTREAM CG33159 DOWNSTREAM CG32277 INTRON gry	TF binding site mE1_TFBS_cad
X	6723290	X_6723290_SNP [dm3] X_6829257_SNP [dm6]	A	G	1.193e^-4	0.751	SYNONYMOUS_CODING nonC	TF binding site mE1_TFBS_chinmo
3L	18221526	3L_18221526_SNP [dm3] 3L_18228426_SNP [dm6]	T	C	1.193e^-4	0.751	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	18452505	2R_18452505_SNP [dm3] 2R_22565000_SNP [dm6]	G	A	1.194e^-4	0.751	SYNONYMOUS_CODING dnr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18182274	X_18182274_SNP [dm3] X_18288241_SNP [dm6]	A	G	1.194e^-4	0.751	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	8342259	2L_8342259_SNP [dm3] 2L_8342259_SNP [dm6]	T	C	1.204e^-4	0.753	UPSTREAM CG14273 DOWNSTREAM CG14274 INTERGENIC
3L	13731812	3L_13731812_SNP [dm3] 3L_13738712_SNP [dm6]	T	G	1.208e^-4	0.753	INTRON bru-3
3L	869653	3L_869653_MNP [dm3] 3L_869653_MNP [dm6]	TTG	CCA	1.226e^-4	0.753	SPLICE_SITE_REGION CG12502 INTRON CG12502	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11880379	2L_11880379_SNP [dm3] 2L_11880379_SNP [dm6]	C	T	1.231e^-4	0.753	INTRON Pde1c
X	10872139	X_10872139_SNP [dm3] X_10978106_SNP [dm6]	T	C	1.234e^-4	0.753	INTRON CG42339
2L	9507907	2L_9507907_SNP [dm3] 2L_9507907_SNP [dm6]	A	C	1.241e^-4	0.753	INTRON CG33298
3L	13280546	3L_13280546_DEL [dm3] 3L_13287446_DEL [dm6]	TCCT	T	1.243e^-4	0.753	UPSTREAM CR45753 INTERGENIC
3L	11489346	3L_11489346_SNP [dm3] 3L_11496246_SNP [dm6]	T	C	1.249e^-4	0.753	UTR_3_PRIME chrb
3R	9533721	3R_9533721_SNP [dm3] 3R_13707999_SNP [dm6]	G	C	1.249e^-4	0.753	SYNONYMOUS_CODING Adgf-C	TF binding site mE1_TFBS_cad
X	3898517	X_3898517_SNP [dm3] X_4004484_SNP [dm6]	T	G	1.250e^-4	0.753	INTERGENIC
3L	10767114	3L_10767114_DEL [dm3] 3L_10774014_DEL [dm6]	GTT	G	1.251e^-4	0.753	DOWNSTREAM CG43245 INTERGENIC
X	15862356	X_15862356_SNP [dm3] X_15968323_SNP [dm6]	A	T	1.252e^-4	0.753	INTRON mmd
3L	13011439	3L_13011439_SNP [dm3] 3L_13018339_SNP [dm6]	T	G	1.252e^-4	0.753	START_GAINED ste14 UTR_5_PRIME ste14 UPSTREAM mRpL20 EXON CR45445
X	3870958	X_3870958_SNP [dm3] X_3976925_SNP [dm6]	T	C	1.255e^-4	0.753	INTERGENIC
X	12820270	X_12820270_SNP [dm3] X_12926237_SNP [dm6]	T	C	1.256e^-4	0.753	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	3719155	2L_3719155_SNP [dm3] 2L_3719155_SNP [dm6]	G	A	1.266e^-4	0.756	INTRON Shaw
3L	2018258	3L_2018258_SNP [dm3] 3L_2018258_SNP [dm6]	A	T	1.269e^-4	0.756	INTERGENIC
2L	9181817	2L_9181817_INS [dm3] 2L_9181817_INS [dm6]	T	TATGT	1.282e^-4	0.761	INTRON tai
3R	26347851	3R_26347851_SNP [dm3] 3R_30522129_SNP [dm6]	T	C	1.290e^-4	0.763	INTRON jdp
3R	4339780	3R_4339780_SNP [dm3] 3R_8514058_SNP [dm6]	G	A	1.301e^-4	0.763	INTERGENIC
X	8860028	X_8860028_SNP [dm3] X_8965995_SNP [dm6]	C	T	1.302e^-4	0.763	DOWNSTREAM mir-4964 INTRON rdgA
3R	11636392	3R_11636392_SNP [dm3] 3R_15810670_SNP [dm6]	T	C	1.308e^-4	0.763	UTR_5_PRIME alpha-Man-IIb DOWNSTREAM CR45211 INTRON alpha-Man-IIb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12585969	2R_12585969_SNP [dm3] 2R_16698464_SNP [dm6]	G	A	1.309e^-4	0.763	INTRON CG30463
3R	18405727	3R_18405727_SNP [dm3] 3R_22580005_SNP [dm6]	A	T	1.312e^-4	0.763	UTR_3_PRIME CG33110 UPSTREAM CSN6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
X	3459115	X_3459115_SNP [dm3] X_3565082_SNP [dm6]	C	A	1.319e^-4	0.763	INTRON CG32791 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2R	9688728	2R_9688728_SNP [dm3] 2R_13801223_SNP [dm6]	C	T	1.330e^-4	0.763	INTRON Cpr50Cb
3L	13314506	3L_13314506_SNP [dm3] 3L_13321406_SNP [dm6]	C	T	1.340e^-4	0.763	INTERGENIC
2L	13099437	2L_13099437_SNP [dm3] 2L_13099437_SNP [dm6]	A	T	1.358e^-4	0.763	INTERGENIC
3R	7605820	3R_7605820_SNP [dm3] 3R_11780098_SNP [dm6]	G	A	1.362e^-4	0.763	UPSTREAM l_3_neo38 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	7602141	2L_7602141_SNP [dm3] 2L_7602141_SNP [dm6]	T	C	1.366e^-4	0.763	INTERGENIC
3R	24088661	3R_24088661_SNP [dm3] 3R_28262939_SNP [dm6]	G	C	1.368e^-4	0.763	SYNONYMOUS_CODING CG43125 DOWNSTREAM CG43124
3L	13304131	3L_13304131_SNP [dm3] 3L_13311031_SNP [dm6]	C	T	1.372e^-4	0.763	INTERGENIC
2R	11493723	2R_11493723_SNP [dm3] 2R_15606218_SNP [dm6]	T	A	1.374e^-4	0.763	INTERGENIC
X	285684	X_285684_SNP [dm3] X_391651_SNP [dm6]	T	A	1.376e^-4	0.763	DOWNSTREAM CR44753 INTRON CG32816
3R	17808704	3R_17808704_SNP [dm3] 3R_21982982_SNP [dm6]	G	C	1.378e^-4	0.763	INTRON Eip93F
3L	22216981	3L_22216981_INS [dm3] 3L_22223881_INS [dm6]	T	TCT	1.382e^-4	0.763	INTRON olf413	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4679834	3R_4679834_SNP [dm3] 3R_8854112_SNP [dm6]	T	A	1.382e^-4	0.763	INTRON pyd	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
3L	757515	3L_757515_SNP [dm3] 3L_757515_SNP [dm6]	T	A	1.392e^-4	0.763	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	11867055	2R_11867055_SNP [dm3] 2R_15979550_SNP [dm6]	G	A	1.393e^-4	0.763	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7602136	2L_7602136_SNP [dm3] 2L_7602136_SNP [dm6]	T	A	1.394e^-4	0.763	INTERGENIC
3L	7358964	3L_7358964_SNP [dm3] 3L_7365864_SNP [dm6]	C	A	1.396e^-4	0.763	NON_SYNONYMOUS_CODING Sh3beta DOWNSTREAM Sh3beta INTRON Sh3beta	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11523643	2R_11523643_SNP [dm3] 2R_15636138_SNP [dm6]	G	C	1.400e^-4	0.763	INTRON CG42524
2L	17533804	2L_17533804_SNP [dm3] 2L_17533804_SNP [dm6]	G	A	1.400e^-4	0.763	INTERGENIC
3L	1445337	3L_1445337_SNP [dm3] 3L_1445337_SNP [dm6]	C	A	1.402e^-4	0.763	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	13945034	3R_13945034_SNP [dm3] 3R_18119312_SNP [dm6]	T	G	1.405e^-4	0.763	INTRON sr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	5752132	3R_5752132_SNP [dm3] 3R_9926410_SNP [dm6]	G	C	1.406e^-4	0.763	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	13252493	3L_13252493_SNP [dm3] 3L_13259393_SNP [dm6]	T	C	1.409e^-4	0.763	INTRON caps
X	17937335	X_17937335_SNP [dm3] X_18043302_SNP [dm6]	A	C	1.417e^-4	0.763	UPSTREAM CG15373 INTRON Sh
3L	7854615	3L_7854615_SNP [dm3] 3L_7861515_SNP [dm6]	C	T	1.419e^-4	0.763	INTRON Pdp1
2L	6650004	2L_6650004_SNP [dm3] 2L_6650004_SNP [dm6]	G	A	1.419e^-4	0.763	SYNONYMOUS_CODING Tango1 UPSTREAM CG31635	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3L	7855730	3L_7855730_SNP [dm3] 3L_7862630_SNP [dm6]	A	T	1.422e^-4	0.763	INTRON Pdp1
2R	11485741	2R_11485741_SNP [dm3] 2R_15598236_SNP [dm6]	C	A	1.430e^-4	0.763	INTERGENIC
2R	3723025	2R_3723025_SNP [dm3] 2R_7835520_SNP [dm6]	A	G	1.432e^-4	0.763	UTR_3_PRIME Dgk DOWNSTREAM Atg10 & 1 other
2R	13410342	2R_13410342_SNP [dm3] 2R_17522837_SNP [dm6]	G	T	1.435e^-4	0.763	INTRON Patronin
2L	13344168	2L_13344168_SNP [dm3] 2L_13344168_SNP [dm6]	T	C	1.442e^-4	0.763	INTERGENIC
2L	2064903	2L_2064903_SNP [dm3] 2L_2064903_SNP [dm6]	A	G	1.450e^-4	0.763	INTRON dpr3
3L	13353384	3L_13353384_SNP [dm3] 3L_13360284_SNP [dm6]	A	T	1.453e^-4	0.763	INTERGENIC
3L	10471630	3L_10471630_SNP [dm3] 3L_10478530_SNP [dm6]	A	C	1.461e^-4	0.763	INTERGENIC
2L	13581078	2L_13581078_SNP [dm3] 2L_13581078_SNP [dm6]	T	A	1.461e^-4	0.763	INTRON kuz
X	5509440	X_5509440_MNP [dm3] X_5615407_MNP [dm6]	TTCC	CAGT	1.465e^-4	0.763	NON_SYNONYMOUS_CODING CG34434 UPSTREAM CG34435
3R	7604471	3R_7604471_SNP [dm3] 3R_11778749_SNP [dm6]	T	A	1.470e^-4	0.763	UPSTREAM l_3_neo38 INTRON l_3_neo38	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
3R	20465326	3R_20465326_SNP [dm3] 3R_24639604_SNP [dm6]	A	G	1.475e^-4	0.763	DOWNSTREAM puf INTRON puf	TF binding site mE1_TFBS_chinmo
2L	16060833	2L_16060833_SNP [dm3] 2L_16060833_SNP [dm6]	T	G	1.486e^-4	0.763	INTRON beat-Ia
3L	11205602	3L_11205602_SNP [dm3] 3L_11212502_SNP [dm6]	A	G	1.493e^-4	0.763	SYNONYMOUS_CODING CG7600	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4880935	3R_4880935_SNP [dm3] 3R_9055213_SNP [dm6]	A	G	1.499e^-4	0.763	INTRON Kdm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	4674747	2L_4674747_SNP [dm3] 2L_4674747_SNP [dm6]	T	C	1.499e^-4	0.763	INTERGENIC
2R	11877154	2R_11877154_SNP [dm3] 2R_15989649_SNP [dm6]	T	A	1.507e^-4	0.763	UPSTREAM Strn-Mlck DOWNSTREAM CG8314 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	4251912	3R_4251912_SNP [dm3] 3R_8426190_SNP [dm6]	A	G	1.511e^-4	0.763	INTRON CG45263
3R	15489209	3R_15489209_SNP [dm3] 3R_19663487_SNP [dm6]	A	G	1.528e^-4	0.763	UTR_3_PRIME ort
3L	7854625	3L_7854625_SNP [dm3] 3L_7861525_SNP [dm6]	C	G	1.529e^-4	0.763	INTRON Pdp1
3R	17719783	3R_17719783_SNP [dm3] 3R_21894061_SNP [dm6]	T	G	1.540e^-4	0.763	INTRON CG6678	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23995553	3R_23995553_DEL [dm3] 3R_28169831_DEL [dm6]	TT	T	1.543e^-4	0.763	INTRON CG34354
3L	5329534	3L_5329534_INS [dm3] 3L_5336434_INS [dm6]	A	AA	1.545e^-4	0.763	INTERGENIC
X	18431461	X_18431461_SNP [dm3] X_18537428_SNP [dm6]	A	G	1.547e^-4	0.763	INTRON Bx
2R	18231491	2R_18231491_DEL [dm3] 2R_22343986_DEL [dm6]	AA	A	1.548e^-4	0.763	INTRON Liprin-gamma
3R	4880783	3R_4880783_SNP [dm3] 3R_9055061_SNP [dm6]	G	A	1.551e^-4	0.763	INTRON Kdm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	19541377	X_19541377_SNP [dm3] X_19647344_SNP [dm6]	A	G	1.555e^-4	0.763	UTR_3_PRIME Ranbp21	TF binding site mE1_TFBS_chinmo
2R	13171601	2R_13171601_SNP [dm3] 2R_17284096_SNP [dm6]	T	C	1.555e^-4	0.763	INTRON mbl
3R	21716853	3R_21716853_SNP [dm3] 3R_25891131_SNP [dm6]	C	T	1.556e^-4	0.763	SYNONYMOUS_CODING Lnk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2162599	X_2162599_SNP [dm3] X_2268566_SNP [dm6]	C	T	1.559e^-4	0.763	INTRON CG2924	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6723503	X_6723503_SNP [dm3] X_6829470_SNP [dm6]	C	A	1.561e^-4	0.763	SYNONYMOUS_CODING nonC	TF binding site mE1_TFBS_chinmo
X	273624	X_273624_INS [dm3] X_379591_INS [dm6]	A	AA	1.562e^-4	0.763	INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	19174345	2R_19174345_SNP [dm3] 2R_23286822_SNP [dm6]	C	G	1.562e^-4	0.763	INTERGENIC
X	712187	X_712187_DEL [dm3] X_818154_DEL [dm6]	TT	T	1.565e^-4	0.763	INTRON CG43867
3R	14322507	3R_14322507_SNP [dm3] 3R_18496785_SNP [dm6]	A	C	1.589e^-4	0.763	INTRON fru	TF binding site mE1_TFBS_inv
2R	19283107	2R_19283107_SNP [dm3] 2R_23395584_SNP [dm6]	G	C	1.593e^-4	0.763	UPSTREAM CG3530 INTRON CG3530	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	24088657	3R_24088657_SNP [dm3] 3R_28262935_SNP [dm6]	G	C	1.593e^-4	0.763	NON_SYNONYMOUS_CODING CG43125 DOWNSTREAM CG43124
3R	15245739	3R_15245739_SNP [dm3] 3R_19420017_SNP [dm6]	A	C	1.600e^-4	0.763	INTRON CG31221
2R	14189251	2R_14189251_SNP [dm3] 2R_18301746_SNP [dm6]	A	T	1.604e^-4	0.763	INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3968795	2L_3968795_SNP [dm3] 2L_3968795_SNP [dm6]	C	T	1.604e^-4	0.763	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	757572	3L_757572_SNP [dm3] 3L_757572_SNP [dm6]	A	T	1.605e^-4	0.763	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	8027811	3R_8027811_SNP [dm3] 3R_12202089_SNP [dm6]	G	C	1.608e^-4	0.763	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	972064	3L_972064_SNP [dm3] 3L_972064_SNP [dm6]	A	G	1.614e^-4	0.763	INTRON Glut1
2R	12442548	2R_12442548_SNP [dm3] 2R_16555043_SNP [dm6]	C	T	1.620e^-4	0.763	SYNONYMOUS_CODING Syn2
2R	2403364	2R_2403364_SNP [dm3] 2R_6515859_SNP [dm6]	T	C	1.621e^-4	0.763	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	15385755	X_15385755_SNP [dm3] X_15491722_SNP [dm6]	A	G	1.623e^-4	0.763	INTRON Gmap	TF binding site BDTNP1_TFBS_dl
X	15166875	X_15166875_SNP [dm3] X_15272842_SNP [dm6]	C	T	1.623e^-4	0.763	UPSTREAM CG9106 INTERGENIC
3R	20968155	3R_20968155_SNP [dm3] 3R_25142433_SNP [dm6]	T	A	1.623e^-4	0.763	INTERGENIC	TF binding site mE1_TFBS_cad
3R	9588472	3R_9588472_SNP [dm3] 3R_13762750_SNP [dm6]	C	T	1.628e^-4	0.763	SYNONYMOUS_CODING CG34383 UTR_3_PRIME CG34383 DOWNSTREAM CG34383
2L	17250765	2L_17250765_SNP [dm3] 2L_17250765_SNP [dm6]	A	G	1.634e^-4	0.763	INTRON beat-IIIc	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3R	4251951	3R_4251951_SNP [dm3] 3R_8426229_SNP [dm6]	A	T	1.640e^-4	0.763	INTRON CG45263
3L	2303287	3L_2303287_SNP [dm3] 3L_2303287_SNP [dm6]	G	A	1.646e^-4	0.763	INTERGENIC
3R	26357983	3R_26357983_SNP [dm3] 3R_30532261_SNP [dm6]	G	A	1.646e^-4	0.763	UPSTREAM tmod & 1 other EXON CR45553	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13731844	3L_13731844_SNP [dm3] 3L_13738744_SNP [dm6]	A	C	1.650e^-4	0.763	INTRON bru-3
2R	12653220	2R_12653220_SNP [dm3] 2R_16765715_SNP [dm6]	T	C	1.651e^-4	0.763	UTR_5_PRIME CG42392 INTRON unc-104
3L	13731813	3L_13731813_SNP [dm3] 3L_13738713_SNP [dm6]	T	G	1.657e^-4	0.763	INTRON bru-3
2L	10452626	2L_10452626_SNP [dm3] 2L_10452626_SNP [dm6]	A	G	1.660e^-4	0.763	UPSTREAM ppk10 DOWNSTREAM CG5322 INTERGENIC
2R	10232982	2R_10232982_SNP [dm3] 2R_14345477_SNP [dm6]	G	T	1.667e^-4	0.763	INTRON Shroom
2L	11921016	2L_11921016_DEL [dm3] 2L_11921016_DEL [dm6]	ATGGTTAGG	A	1.670e^-4	0.763	INTRON Pde1c
X	18620014	X_18620014_SNP [dm3] X_18725981_SNP [dm6]	C	T	1.674e^-4	0.763	SYNONYMOUS_CODING CCKLR-17D1 UPSTREAM CG42302	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	25964276	3R_25964276_SNP [dm3] 3R_30138554_SNP [dm6]	G	T	1.685e^-4	0.763	UTR_5_PRIME AdoR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12454802	2L_12454802_SNP [dm3] 2L_12454802_SNP [dm6]	G	A	1.685e^-4	0.763	DOWNSTREAM bun EXON CR17024	TF binding site mE1_TFBS_sens
3R	10399757	3R_10399757_SNP [dm3] 3R_14574035_SNP [dm6]	C	T	1.688e^-4	0.763	SYNONYMOUS_CODING CG7987	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
X	3097260	X_3097260_SNP [dm3] X_3203227_SNP [dm6]	T	G	1.690e^-4	0.763	INTRON dnc
2R	2403238	2R_2403238_SNP [dm3] 2R_6515733_SNP [dm6]	C	T	1.699e^-4	0.763	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	13375329	3L_13375329_SNP [dm3] 3L_13382229_SNP [dm6]	A	G	1.700e^-4	0.763	UPSTREAM CG14107 & 1 other INTERGENIC
2R	1924492	2R_1924492_SNP [dm3] 2R_6036987_SNP [dm6]	G	A	1.700e^-4	0.763	UTR_3_PRIME CG14591 UPSTREAM SCAP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	17390990	2R_17390990_SNP [dm3] 2R_21503485_SNP [dm6]	A	T	1.703e^-4	0.763	INTRON MESK2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_Trl
3R	7708111	3R_7708111_SNP [dm3] 3R_11882389_SNP [dm6]	T	C	1.704e^-4	0.763	UPSTREAM CG31368 INTRON CG6962	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	15352550	3L_15352550_SNP [dm3] 3L_15359450_SNP [dm6]	G	T	1.704e^-4	0.763	INTERGENIC
3R	24671973	3R_24671973_SNP [dm3] 3R_28846251_SNP [dm6]	C	A	1.705e^-4	0.763	INTRON spg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	18877475	X_18877475_DEL [dm3] X_18983442_DEL [dm6]	AA	C	1.711e^-4	0.764	INTRON CG43759
2L	9655403	2L_9655403_SNP [dm3] 2L_9655403_SNP [dm6]	T	C	1.720e^-4	0.766	SYNONYMOUS_CODING Apoltp
X	8860097	X_8860097_SNP [dm3] X_8966064_SNP [dm6]	T	A	1.733e^-4	0.768	DOWNSTREAM mir-4964 INTRON rdgA
2L	15025010	2L_15025010_SNP [dm3] 2L_15025010_SNP [dm6]	A	G	1.742e^-4	0.768	INTRON GABA-B-R1
3L	13536837	3L_13536837_SNP [dm3] 3L_13543737_SNP [dm6]	G	A	1.743e^-4	0.768	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9693194	2L_9693194_SNP [dm3] 2L_9693194_SNP [dm6]	T	A	1.743e^-4	0.768	INTRON Pka-C1
X	15669425	X_15669425_SNP [dm3] X_15775392_SNP [dm6]	G	A	1.747e^-4	0.768	SYNONYMOUS_CODING CG43672
2L	10452646	2L_10452646_SNP [dm3] 2L_10452646_SNP [dm6]	A	T	1.747e^-4	0.768	UPSTREAM ppk10 DOWNSTREAM CG5322 INTERGENIC
2L	3640514	2L_3640514_SNP [dm3] 2L_3640514_SNP [dm6]	A	T	1.763e^-4	0.77	UTR_5_PRIME for	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4696244	3L_4696244_DEL [dm3] 3L_4696244_DEL [dm6]	GCCCCACCATCAG...	G	1.764e^-4	0.77	INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	5881887	3L_5881887_SNP [dm3] 3L_5888787_SNP [dm6]	A	G	1.765e^-4	0.77	INTERGENIC
3L	9385012	3L_9385012_SNP [dm3] 3L_9391912_SNP [dm6]	A	C	1.777e^-4	0.771	INTRON CG4080	TF binding site BDTNP1_TFBS_dl
X	18620059	X_18620059_SNP [dm3] X_18726026_SNP [dm6]	G	C	1.779e^-4	0.771	SYNONYMOUS_CODING CCKLR-17D1 UPSTREAM CG42302	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	15989848	2L_15989848_SNP [dm3] 2L_15989848_SNP [dm6]	A	C	1.784e^-4	0.771	EXON CR43412	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26808982	3R_26808982_INS [dm3] 3R_30983260_INS [dm6]	A	AATTTTA	1.787e^-4	0.771	INTRON 5-HT7	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9318686	3L_9318686_SNP [dm3] 3L_9325586_SNP [dm6]	A	G	1.791e^-4	0.771	INTERGENIC
3L	7851192	3L_7851192_SNP [dm3] 3L_7858092_SNP [dm6]	T	C	1.793e^-4	0.771	INTRON Pdp1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16735465	X_16735465_SNP [dm3] X_16841432_SNP [dm6]	G	A	1.800e^-4	0.772	INTRON RSG7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20911987	3R_20911987_SNP [dm3] 3R_25086265_SNP [dm6]	G	C	1.816e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3249015	X_3249015_SNP [dm3] X_3354982_SNP [dm6]	T	C	1.817e^-4	0.772	INTERGENIC
3L	6548054	3L_6548054_SNP [dm3] 3L_6554954_SNP [dm6]	A	G	1.824e^-4	0.772	INTRON CG18769
3L	2018248	3L_2018248_SNP [dm3] 3L_2018248_SNP [dm6]	A	T	1.826e^-4	0.772	INTERGENIC
X	4677552	X_4677552_SNP [dm3] X_4783519_SNP [dm6]	G	C	1.833e^-4	0.772	UPSTREAM CG15471 & 1 other INTERGENIC
2R	3097270	2R_3097270_SNP [dm3] 2R_7209765_SNP [dm6]	A	T	1.839e^-4	0.772	INTRON pk
3R	26812013	3R_26812013_SNP [dm3] 3R_30986291_SNP [dm6]	T	A	1.840e^-4	0.772	INTRON 5-HT7
X	292960	X_292960_SNP [dm3] X_398927_SNP [dm6]	T	C	1.846e^-4	0.772	INTRON CG32816	TF binding site BDTNP1_TFBS_dl
2L	11687850	2L_11687850_SNP [dm3] 2L_11687850_SNP [dm6]	G	C	1.857e^-4	0.772	INTERGENIC
3R	22160849	3R_22160849_SNP [dm3] 3R_26335127_SNP [dm6]	G	C	1.859e^-4	0.772	INTRON CG33970
3L	12611541	3L_12611541_SNP [dm3] 3L_12618441_SNP [dm6]	A	G	1.860e^-4	0.772	SYNONYMOUS_CODING caup
2L	12298957	2L_12298957_SNP [dm3] 2L_12298957_SNP [dm6]	T	G	1.865e^-4	0.772	SYNONYMOUS_CODING aret	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	12721118	X_12721118_SNP [dm3] X_12827085_SNP [dm6]	T	C	1.866e^-4	0.772	INTRON Pde9
3L	2911145	3L_2911145_SNP [dm3] 3L_2911145_SNP [dm6]	C	A	1.867e^-4	0.772	INTRON Shab
3R	26811989	3R_26811989_SNP [dm3] 3R_30986267_SNP [dm6]	G	A	1.867e^-4	0.772	INTRON 5-HT7
3R	15811910	3R_15811910_SNP [dm3] 3R_19986188_SNP [dm6]	A	T	1.873e^-4	0.772	INTRON Hs6st
3L	11284546	3L_11284546_SNP [dm3] 3L_11291446_SNP [dm6]	T	C	1.887e^-4	0.772	INTRON CG6175
X	19388052	X_19388052_SNP [dm3] X_19494019_SNP [dm6]	T	G	1.889e^-4	0.772	NON_SYNONYMOUS_CODING CG12204 DOWNSTREAM CG12203 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2L	11881256	2L_11881256_SNP [dm3] 2L_11881256_SNP [dm6]	A	C	1.894e^-4	0.772	INTRON Pde1c	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8031059	3R_8031059_SNP [dm3] 3R_12205337_SNP [dm6]	G	A	1.900e^-4	0.772	INTERGENIC
2L	12548971	2L_12548971_SNP [dm3] 2L_12548971_SNP [dm6]	G	T	1.901e^-4	0.772	INTERGENIC
2R	17025821	2R_17025821_SNP [dm3] 2R_21138316_SNP [dm6]	G	T	1.906e^-4	0.772	NON_SYNONYMOUS_CODING Magi	TF binding site mE1_TFBS_chinmo
X	18619367	X_18619367_SNP [dm3] X_18725334_SNP [dm6]	G	A	1.922e^-4	0.772	SYNONYMOUS_CODING CG42302 INTRON CCKLR-17D1
3L	8150415	3L_8150415_DEL [dm3] 3L_8157315_DEL [dm6]	TT	A	1.933e^-4	0.772	INTRON CG42445
X	3487824	X_3487824_SNP [dm3] X_3593791_SNP [dm6]	C	A	1.935e^-4	0.772	INTRON AstA-R1
2L	19400313	2L_19400313_SNP [dm3] 2L_19400313_SNP [dm6]	A	C	1.936e^-4	0.772	DOWNSTREAM Pax INTERGENIC
X	19388053	X_19388053_SNP [dm3] X_19494020_SNP [dm6]	T	C	1.940e^-4	0.772	SYNONYMOUS_CODING CG12204 DOWNSTREAM CG12203 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo
3L	5329546	3L_5329546_SNP [dm3] 3L_5336446_SNP [dm6]	A	T	1.942e^-4	0.772	INTERGENIC
X	8865877	X_8865877_SNP [dm3] X_8971844_SNP [dm6]	G	C	1.943e^-4	0.772	INTRON rdgA
2L	3968782	2L_3968782_SNP [dm3] 2L_3968782_SNP [dm6]	C	T	1.946e^-4	0.772	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	4463767	2L_4463767_SNP [dm3] 2L_4463767_SNP [dm6]	C	T	1.952e^-4	0.772	UTR_5_PRIME CG15436 UPSTREAM CG15443	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	5408269	3R_5408269_SNP [dm3] 3R_9582547_SNP [dm6]	C	T	1.962e^-4	0.772	NON_SYNONYMOUS_CODING CG33654 INTRON CG8301
X	16866664	X_16866664_SNP [dm3] X_16972631_SNP [dm6]	G	T	1.963e^-4	0.772	UTR_3_PRIME CG45002
2L	12280384	2L_12280384_INS [dm3] 2L_12280384_INS [dm6]	T	TT	1.964e^-4	0.772	INTRON aret
3L	8822708	3L_8822708_SNP [dm3] 3L_8829608_SNP [dm6]	G	A	1.964e^-4	0.772	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	720143	X_720143_SNP [dm3] X_826110_SNP [dm6]	C	T	1.969e^-4	0.772	INTRON CG43867	TF binding site mE1_TFBS_HSA
X	5217826	X_5217826_INS [dm3] X_5323793_INS [dm6]	T	TGTAT	1.969e^-4	0.772	UPSTREAM Mcm3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_ttk
2R	17905304	2R_17905304_SNP [dm3] 2R_22017799_SNP [dm6]	G	T	1.973e^-4	0.772	INTRON CG34370
X	17933058	X_17933058_DEL [dm3] X_18039025_DEL [dm6]	TA	T	1.978e^-4	0.772	INTRON Sh
3L	2295022	3L_2295022_SNP [dm3] 3L_2295022_SNP [dm6]	G	C	1.979e^-4	0.772	INTRON MsR2	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	16242196	2L_16242196_SNP [dm3] 2L_16242196_SNP [dm6]	T	C	1.984e^-4	0.772	NON_SYNONYMOUS_CODING CG42818 DOWNSTREAM CG42817
3L	1489225	3L_1489225_SNP [dm3] 3L_1489225_SNP [dm6]	A	T	1.987e^-4	0.772	DOWNSTREAM CR43701 & 1 other INTRON stet	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7915581	2R_7915581_SNP [dm3] 2R_12028076_SNP [dm6]	C	A	1.988e^-4	0.772	UTR_5_PRIME pds5 UPSTREAM Mppe	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3R	20967243	3R_20967243_SNP [dm3] 3R_25141521_SNP [dm6]	G	A	1.991e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24711113	3R_24711113_SNP [dm3] 3R_28885391_SNP [dm6]	C	T	2.003e^-4	0.772	SYNONYMOUS_CODING CG14526 INTRON CG33203
2L	20227470	2L_20227470_SNP [dm3] 2L_20227470_SNP [dm6]	A	G	2.003e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	20413339	X_20413339_SNP [dm3] X_20542312_SNP [dm6]	C	A	2.005e^-4	0.772	INTRON RunxB
X	19539525	X_19539525_SNP [dm3] X_19645492_SNP [dm6]	C	T	2.006e^-4	0.772	SYNONYMOUS_CODING Arp10 DOWNSTREAM Sec61gamma & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17937277	X_17937277_SNP [dm3] X_18043244_SNP [dm6]	C	T	2.008e^-4	0.772	UPSTREAM CG15373 INTRON Sh
2L	6550461	2L_6550461_SNP [dm3] 2L_6550461_SNP [dm6]	A	C	2.009e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	10055872	3R_10055872_SNP [dm3] 3R_14230150_SNP [dm6]	C	G	2.018e^-4	0.772	INTERGENIC
3L	18194580	3L_18194580_SNP [dm3] 3L_18201480_SNP [dm6]	G	T	2.024e^-4	0.772	UPSTREAM CG7320 INTERGENIC
2L	21052437	2L_21052437_SNP [dm3] 2L_21052437_SNP [dm6]	T	A	2.042e^-4	0.772	UPSTREAM CG42238 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
X	14661409	X_14661409_SNP [dm3] X_14767376_SNP [dm6]	C	T	2.048e^-4	0.772	INTERGENIC
2R	13529993	2R_13529993_INS [dm3] 2R_17642488_INS [dm6]	C	CT	2.050e^-4	0.772	INTERGENIC
X	18182315	X_18182315_SNP [dm3] X_18288282_SNP [dm6]	T	A	2.050e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	20473200	X_20473200_SNP [dm3] X_20602173_SNP [dm6]	G	A	2.053e^-4	0.772	INTRON RunxA
X	18182285	X_18182285_SNP [dm3] X_18288252_SNP [dm6]	T	A	2.053e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	10377051	2L_10377051_SNP [dm3] 2L_10377051_SNP [dm6]	A	G	2.055e^-4	0.772	INTRON dpr19	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	2064866	2L_2064866_SNP [dm3] 2L_2064866_SNP [dm6]	A	G	2.058e^-4	0.772	INTRON dpr3
2L	8342257	2L_8342257_SNP [dm3] 2L_8342257_SNP [dm6]	G	C	2.063e^-4	0.772	UPSTREAM CG14273 DOWNSTREAM CG14274 INTERGENIC
2R	14665932	2R_14665932_SNP [dm3] 2R_18778427_SNP [dm6]	G	C	2.067e^-4	0.772	INTERGENIC
X	18991174	X_18991174_SNP [dm3] X_19097141_SNP [dm6]	C	A	2.070e^-4	0.772	INTERGENIC
X	202103	X_202103_INS [dm3] X_308070_INS [dm6]	T	TG	2.078e^-4	0.772	INTRON CG3777 & 1 other
3R	5770310	3R_5770310_SNP [dm3] 3R_9944588_SNP [dm6]	A	G	2.078e^-4	0.772	UTR_3_PRIME Glut4EF INTRON Glut4EF
3L	11021221	3L_11021221_SNP [dm3] 3L_11028121_SNP [dm6]	A	T	2.079e^-4	0.772	SYNONYMOUS_CODING CG32081 DOWNSTREAM CG32079
3L	877268	3L_877268_SNP [dm3] 3L_877268_SNP [dm6]	C	A	2.081e^-4	0.772	DOWNSTREAM CG13907 INTRON CG32479
3L	13957628	3L_13957628_SNP [dm3] 3L_13964528_SNP [dm6]	A	G	2.085e^-4	0.772	SYNONYMOUS_CODING Meics UPSTREAM ssp2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	7855866	3L_7855866_SNP [dm3] 3L_7862766_SNP [dm6]	C	T	2.096e^-4	0.772	INTRON Pdp1
3L	2759461	3L_2759461_SNP [dm3] 3L_2759461_SNP [dm6]	T	A	2.098e^-4	0.772	INTRON Mrtf
3R	24923615	3R_24923615_SNP [dm3] 3R_29097893_SNP [dm6]	C	G	2.103e^-4	0.772	INTRON CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3106152	2R_3106152_SNP [dm3] 2R_7218647_SNP [dm6]	G	T	2.106e^-4	0.772	INTRON pk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	19872574	X_19872574_SNP [dm3] X_19978541_SNP [dm6]	A	T	2.106e^-4	0.772	INTERGENIC
3R	22160515	3R_22160515_SNP [dm3] 3R_26334793_SNP [dm6]	T	C	2.109e^-4	0.772	INTRON CG33970
2L	7114439	2L_7114439_INS [dm3] 2L_7114439_INS [dm6]	G	GAG	2.118e^-4	0.772	INTRON Pvf3
3L	2305326	3L_2305326_SNP [dm3] 3L_2305326_SNP [dm6]	A	T	2.122e^-4	0.772	INTERGENIC
3L	757103	3L_757103_SNP [dm3] 3L_757103_SNP [dm6]	A	G	2.123e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4262124	3R_4262124_SNP [dm3] 3R_8436402_SNP [dm6]	T	C	2.124e^-4	0.772	INTRON CG45263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14488135	X_14488135_SNP [dm3] X_14594102_SNP [dm6]	T	C	2.125e^-4	0.772	INTRON CG9413
X	3145363	X_3145363_SNP [dm3] X_3251330_SNP [dm6]	C	A	2.127e^-4	0.772	DOWNSTREAM Sgs4 INTRON dnc
3R	15812031	3R_15812031_SNP [dm3] 3R_19986309_SNP [dm6]	G	A	2.131e^-4	0.772	INTRON Hs6st
2L	8557949	2L_8557949_SNP [dm3] 2L_8557949_SNP [dm6]	T	A	2.135e^-4	0.772	INTRON Sema-1a	TF binding site mE1_TFBS_cad
3R	27523235	3R_27523235_SNP [dm3] 3R_31697513_SNP [dm6]	C	T	2.150e^-4	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	13271162	X_13271162_SNP [dm3] X_13377129_SNP [dm6]	C	T	2.152e^-4	0.774	INTRON CG1640
2L	8365885	2L_8365885_SNP [dm3] 2L_8365885_SNP [dm6]	G	A	2.162e^-4	0.774	UPSTREAM Pp2A-29B DOWNSTREAM CSN8 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	11493758	2R_11493758_SNP [dm3] 2R_15606253_SNP [dm6]	G	A	2.165e^-4	0.774	INTERGENIC
2L	3968828	2L_3968828_SNP [dm3] 2L_3968828_SNP [dm6]	A	G	2.165e^-4	0.774	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	9542533	2L_9542533_SNP [dm3] 2L_9542533_SNP [dm6]	G	A	2.173e^-4	0.774	UPSTREAM Cpr30B DOWNSTREAM CG17855 INTERGENIC
2L	15743867	2L_15743867_SNP [dm3] 2L_15743867_SNP [dm6]	G	A	2.174e^-4	0.774	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	4127719	3L_4127719_SNP [dm3] 3L_4127719_SNP [dm6]	T	C	2.180e^-4	0.774	INTRON ens
X	19571499	X_19571499_SNP [dm3] X_19677466_SNP [dm6]	G	A	2.187e^-4	0.774	SYNONYMOUS_CODING dome	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6294289	2R_6294289_SNP [dm3] 2R_10406784_SNP [dm6]	G	A	2.196e^-4	0.774	DOWNSTREAM CG12898 INTRON CG42732
2R	11493720	2R_11493720_SNP [dm3] 2R_15606215_SNP [dm6]	A	C	2.200e^-4	0.774	INTERGENIC
3R	13781269	3R_13781269_SNP [dm3] 3R_17955547_SNP [dm6]	T	C	2.200e^-4	0.774	INTRON cpo
2R	9292549	2R_9292549_SNP [dm3] 2R_13405044_SNP [dm6]	T	G	2.205e^-4	0.774	INTERGENIC
2L	20219572	2L_20219572_SNP [dm3] 2L_20219572_SNP [dm6]	T	C	2.205e^-4	0.774	INTERGENIC	transposable element FlyBase
X	18182286	X_18182286_SNP [dm3] X_18288253_SNP [dm6]	A	T	2.209e^-4	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	12662296	3L_12662296_SNP [dm3] 3L_12669196_SNP [dm6]	C	G	2.214e^-4	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1497700	3L_1497700_SNP [dm3] 3L_1497700_SNP [dm6]	A	G	2.220e^-4	0.774	NON_SYNONYMOUS_CODING pUf68	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	11672303	X_11672303_SNP [dm3] X_11778270_SNP [dm6]	A	T	2.222e^-4	0.774	UTR_5_PRIME dy
3L	13245390	3L_13245390_SNP [dm3] 3L_13252290_SNP [dm6]	A	C	2.225e^-4	0.774	INTRON caps
2L	6550775	2L_6550775_SNP [dm3] 2L_6550775_SNP [dm6]	A	G	2.225e^-4	0.774	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	2289161	3L_2289161_SNP [dm3] 3L_2289161_SNP [dm6]	A	T	2.232e^-4	0.775	INTRON MsR2	TF binding site mE1_TFBS_inv
2L	7699402	2L_7699402_SNP [dm3] 2L_7699402_SNP [dm6]	C	T	2.237e^-4	0.776	SYNONYMOUS_CODING Tep2	TF binding site mE1_TFBS_sens
X	2885827	X_2885827_INS [dm3] X_2991794_INS [dm6]	A	AA	2.246e^-4	0.776	INTRON kirre
2L	3968771	2L_3968771_SNP [dm3] 2L_3968771_SNP [dm6]	T	C	2.248e^-4	0.776	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	18619696	X_18619696_SNP [dm3] X_18725663_SNP [dm6]	A	G	2.250e^-4	0.776	UTR_5_PRIME CG42302 INTRON CCKLR-17D1	TF binding site mE1_TFBS_inv
X	22184316	X_22184316_SNP [dm3] X_22782480_SNP [dm6]	C	T	2.257e^-4	0.776	INTRON CR44997
3R	22160908	3R_22160908_SNP [dm3] 3R_26335186_SNP [dm6]	A	G	2.260e^-4	0.776	INTRON CG33970
3R	15887942	3R_15887942_SNP [dm3] 3R_20062220_SNP [dm6]	C	A	2.262e^-4	0.776	INTERGENIC
3L	16875729	3L_16875729_SNP [dm3] 3L_16882629_SNP [dm6]	G	A	2.266e^-4	0.776	INTRON Lmpt
3L	18617504	3L_18617504_SNP [dm3] 3L_18624404_SNP [dm6]	G	T	2.290e^-4	0.779	SYNONYMOUS_CODING bora
2L	8059481	2L_8059481_SNP [dm3] 2L_8059481_SNP [dm6]	G	A	2.293e^-4	0.779	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_HSA
2L	4345287	2L_4345287_SNP [dm3] 2L_4345287_SNP [dm6]	A	G	2.299e^-4	0.779	UTR_3_PRIME Atet	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	9492550	3L_9492550_SNP [dm3] 3L_9499450_SNP [dm6]	C	A	2.299e^-4	0.779	INTRON path
2L	4059338	2L_4059338_SNP [dm3] 2L_4059338_SNP [dm6]	C	T	2.300e^-4	0.779	INTRON ed
X	17938463	X_17938463_SNP [dm3] X_18044430_SNP [dm6]	G	T	2.302e^-4	0.779	NON_SYNONYMOUS_CODING CG15373 INTRON Sh
X	16070025	X_16070025_SNP [dm3] X_16175992_SNP [dm6]	G	C	2.309e^-4	0.78	INTERGENIC
X	5509404	X_5509404_SNP [dm3] X_5615371_SNP [dm6]	C	A	2.324e^-4	0.782	NON_SYNONYMOUS_CODING CG34434 UPSTREAM CG34435
2L	11877871	2L_11877871_SNP [dm3] 2L_11877871_SNP [dm6]	A	T	2.324e^-4	0.782	UPSTREAM Pde1c INTRON Pde1c
3L	6913860	3L_6913860_SNP [dm3] 3L_6920760_SNP [dm6]	T	C	2.331e^-4	0.782	INTERGENIC
X	16735581	X_16735581_SNP [dm3] X_16841548_SNP [dm6]	A	T	2.333e^-4	0.782	INTRON RSG7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11662275	2L_11662275_SNP [dm3] 2L_11662275_SNP [dm6]	A	C	2.336e^-4	0.782	UPSTREAM CR44479 & 1 other EXON CR44480
2R	19331741	2R_19331741_SNP [dm3] 2R_23444218_SNP [dm6]	T	C	2.352e^-4	0.782	UTR_5_PRIME CG43795	TF binding site BDTNP1_TFBS_dl
3L	7896413	3L_7896413_SNP [dm3] 3L_7903313_SNP [dm6]	C	G	2.356e^-4	0.782	UTR_5_PRIME pbl INTRON pbl
3L	12802499	3L_12802499_SNP [dm3] 3L_12809399_SNP [dm6]	G	A	2.358e^-4	0.782	NON_SYNONYMOUS_CODING CG32110 INTRON Sap130	TF binding site mE1_TFBS_cad
X	14698948	X_14698948_SNP [dm3] X_14804915_SNP [dm6]	A	T	2.359e^-4	0.782	INTRON rut
2R	13364233	2R_13364233_SNP [dm3] 2R_17476728_SNP [dm6]	G	T	2.361e^-4	0.782	UPSTREAM CG6520 DOWNSTREAM CG43110 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	7108112	2L_7108112_SNP [dm3] 2L_7108112_SNP [dm6]	A	G	2.363e^-4	0.782	INTRON Pvf3
3L	17972556	3L_17972556_SNP [dm3] 3L_17979456_SNP [dm6]	A	G	2.363e^-4	0.782	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
2R	4531465	2R_4531465_SNP [dm3] 2R_8643960_SNP [dm6]	A	C	2.370e^-4	0.783	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	19542211	X_19542211_SNP [dm3] X_19648178_SNP [dm6]	T	G	2.375e^-4	0.783	SYNONYMOUS_CODING Ranbp21	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13883318	2L_13883318_SNP [dm3] 2L_13883318_SNP [dm6]	C	A	2.381e^-4	0.783	INTRON CenG1A
X	3459014	X_3459014_SNP [dm3] X_3564981_SNP [dm6]	G	A	2.398e^-4	0.783	INTRON CG32791 & 1 other
2L	11687848	2L_11687848_SNP [dm3] 2L_11687848_SNP [dm6]	A	G	2.398e^-4	0.783	INTERGENIC
2R	12585957	2R_12585957_DEL [dm3] 2R_16698452_DEL [dm6]	AA	A	2.409e^-4	0.783	INTRON CG30463
2L	4548270	2L_4548270_SNP [dm3] 2L_4548270_SNP [dm6]	T	G	2.411e^-4	0.783	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	310327	X_310327_SNP [dm3] X_416294_SNP [dm6]	A	G	2.415e^-4	0.783	INTRON CG32816	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	15417550	3R_15417550_SNP [dm3] 3R_19591828_SNP [dm6]	C	T	2.419e^-4	0.783	SYNONYMOUS_CODING Dys
X	19260699	X_19260699_SNP [dm3] X_19366666_SNP [dm6]	T	G	2.420e^-4	0.783	INTRON kek5
3L	7013480	3L_7013480_SNP [dm3] 3L_7020380_SNP [dm6]	T	C	2.422e^-4	0.783	INTRON Mp
2L	13716013	2L_13716013_SNP [dm3] 2L_13716013_SNP [dm6]	T	C	2.423e^-4	0.783	INTRON CG31814
X	2892952	X_2892952_SNP [dm3] X_2998919_SNP [dm6]	T	G	2.423e^-4	0.783	INTRON kirre
X	16735758	X_16735758_SNP [dm3] X_16841725_SNP [dm6]	T	A	2.424e^-4	0.783	INTRON RSG7	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2169360	2L_2169360_INS [dm3] 2L_2169360_INS [dm6]	A	AA	2.434e^-4	0.783	INTRON aop	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3L	7854614	3L_7854614_SNP [dm3] 3L_7861514_SNP [dm6]	A	G	2.436e^-4	0.783	INTRON Pdp1
X	15076784	X_15076784_SNP [dm3] X_15182751_SNP [dm6]	A	T	2.440e^-4	0.783	INTRON CG43737
X	6576525	X_6576525_SNP [dm3] X_6682492_SNP [dm6]	G	T	2.447e^-4	0.783	DOWNSTREAM l_1_G0255 INTRON CG4095	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18260172	3L_18260172_SNP [dm3] 3L_18267072_SNP [dm6]	A	C	2.448e^-4	0.783	INTERGENIC
2L	5871915	2L_5871915_SNP [dm3] 2L_5871915_SNP [dm6]	G	A	2.451e^-4	0.783	INTRON rau	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3R	16005280	3R_16005280_SNP [dm3] 3R_20179558_SNP [dm6]	A	G	2.454e^-4	0.783	INTERGENIC
3R	6302347	3R_6302347_SNP [dm3] 3R_10476625_SNP [dm6]	T	G	2.468e^-4	0.785	INTERGENIC
3R	26811050	3R_26811050_SNP [dm3] 3R_30985328_SNP [dm6]	C	T	2.471e^-4	0.785	INTRON 5-HT7
X	4522297	X_4522297_SNP [dm3] X_4628264_SNP [dm6]	G	A	2.472e^-4	0.785	SYNONYMOUS_CODING CG12184	TF binding site mE1_TFBS_sens
X	3459136	X_3459136_SNP [dm3] X_3565103_SNP [dm6]	A	C	2.481e^-4	0.786	INTRON CG32791 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3L	9492417	3L_9492417_SNP [dm3] 3L_9499317_SNP [dm6]	T	C	2.496e^-4	0.79	INTRON path
X	2479937	X_2479937_SNP [dm3] X_2585904_SNP [dm6]	A	T	2.503e^-4	0.79	UPSTREAM wds & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	6582704	3R_6582704_SNP [dm3] 3R_10756982_SNP [dm6]	A	T	2.512e^-4	0.791	INTRON CG31272 EXON CR45015
2L	16242258	2L_16242258_SNP [dm3] 2L_16242258_SNP [dm6]	T	A	2.515e^-4	0.791	NON_SYNONYMOUS_CODING CG42818 DOWNSTREAM CG42817
X	19542343	X_19542343_SNP [dm3] X_19648310_SNP [dm6]	T	C	2.529e^-4	0.791	SYNONYMOUS_CODING Ranbp21	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	17367115	X_17367115_SNP [dm3] X_17473082_SNP [dm6]	A	G	2.531e^-4	0.791	INTRON CG43658	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	18619677	X_18619677_SNP [dm3] X_18725644_SNP [dm6]	A	T	2.533e^-4	0.791	UTR_5_PRIME CG42302 INTRON CCKLR-17D1	TF binding site mE1_TFBS_inv
3L	10510332	3L_10510332_DEL [dm3] 3L_10517232_DEL [dm6]	CATTGC	C	2.540e^-4	0.791	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11881231	2L_11881231_SNP [dm3] 2L_11881231_SNP [dm6]	T	C	2.541e^-4	0.791	INTRON Pde1c	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	10503278	3R_10503278_SNP [dm3] 3R_14677556_SNP [dm6]	A	T	2.544e^-4	0.791	INTRON Meltrin
3L	921583	3L_921583_SNP [dm3] 3L_921583_SNP [dm6]	A	T	2.547e^-4	0.791	INTRON Glut1
X	17428694	X_17428694_SNP [dm3] X_17534661_SNP [dm6]	A	G	2.558e^-4	0.791	SPLICE_SITE_REGION CG43658 INTRON CG43658	TF binding site mE1_TFBS_inv
X	18933032	X_18933032_SNP [dm3] X_19038999_SNP [dm6]	C	G	2.561e^-4	0.791	INTERGENIC
2L	3968723	2L_3968723_SNP [dm3] 2L_3968723_SNP [dm6]	T	A	2.562e^-4	0.791	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	1498264	3L_1498264_SNP [dm3] 3L_1498264_SNP [dm6]	A	C	2.571e^-4	0.791	DOWNSTREAM scaRNA:MeU2-48 INTRON pUf68	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22158749	3L_22158749_SNP [dm3] 3L_22165649_SNP [dm6]	C	T	2.571e^-4	0.791	INTRON olf413	TF binding site mE1_TFBS_chinmo
2L	3968736	2L_3968736_SNP [dm3] 2L_3968736_SNP [dm6]	C	A	2.579e^-4	0.791	INTRON fred	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	3594770	2L_3594770_SNP [dm3] 2L_3594770_SNP [dm6]	A	C	2.580e^-4	0.791	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	7176027	2L_7176027_SNP [dm3] 2L_7176027_SNP [dm6]	G	C	2.583e^-4	0.791	INTERGENIC
2L	19430458	2L_19430458_SNP [dm3] 2L_19430458_SNP [dm6]	A	G	2.583e^-4	0.791	UPSTREAM CG9987 DOWNSTREAM CG13085 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
2L	8667784	2L_8667784_SNP [dm3] 2L_8667784_SNP [dm6]	A	G	2.594e^-4	0.791	UTR_3_PRIME Sema-1a DOWNSTREAM Sema-1a
X	3133116	X_3133116_SNP [dm3] X_3239083_SNP [dm6]	G	T	2.594e^-4	0.791	DOWNSTREAM ng2 INTRON dnc	TF binding site mE1_TFBS_HSA
2R	19111144	2R_19111144_SNP [dm3] 2R_23223621_SNP [dm6]	C	T	2.598e^-4	0.791	INTERGENIC
X	3770095	X_3770095_SNP [dm3] X_3876062_SNP [dm6]	T	A	2.601e^-4	0.791	SYNONYMOUS_CODING CG2930
X	19542430	X_19542430_SNP [dm3] X_19648397_SNP [dm6]	A	G	2.603e^-4	0.791	SYNONYMOUS_CODING Ranbp21	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8207287	3R_8207287_SNP [dm3] 3R_12381565_SNP [dm6]	G	C	2.616e^-4	0.793	UTR_3_PRIME CG10035 DOWNSTREAM CG10035 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	17301231	X_17301231_SNP [dm3] X_17407198_SNP [dm6]	A	G	2.619e^-4	0.793	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	4412888	3L_4412888_SNP [dm3] 3L_4412888_SNP [dm6]	T	A	2.629e^-4	0.793	INTRON DOR
3L	7944694	3L_7944694_SNP [dm3] 3L_7951594_SNP [dm6]	T	C	2.633e^-4	0.793	DOWNSTREAM exex INTERGENIC
2L	6116297	2L_6116297_SNP [dm3] 2L_6116297_SNP [dm6]	A	T	2.634e^-4	0.793	INTRON stai
X	18182256	X_18182256_SNP [dm3] X_18288223_SNP [dm6]	G	A	2.639e^-4	0.793	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	4674745	2L_4674745_SNP [dm3] 2L_4674745_SNP [dm6]	T	C	2.648e^-4	0.793	INTERGENIC
3R	26811085	3R_26811085_SNP [dm3] 3R_30985363_SNP [dm6]	G	A	2.648e^-4	0.793	INTRON 5-HT7
X	14316701	X_14316701_SNP [dm3] X_14422668_SNP [dm6]	A	G	2.650e^-4	0.793	INTRON dpr8	TF binding site mE1_TFBS_inv
X	335405	X_335405_SNP [dm3] X_441372_SNP [dm6]	C	T	2.653e^-4	0.793	INTRON CG32816	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	10342039	3L_10342039_SNP [dm3] 3L_10348939_SNP [dm6]	C	T	2.659e^-4	0.793	INTRON CR44327
X	19542280	X_19542280_SNP [dm3] X_19648247_SNP [dm6]	A	G	2.660e^-4	0.793	SYNONYMOUS_CODING Ranbp21	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7163508	2L_7163508_INS [dm3] 2L_7163508_INS [dm6]	T	TA	2.669e^-4	0.795	INTERGENIC
3L	9385060	3L_9385060_SNP [dm3] 3L_9391960_SNP [dm6]	C	A	2.673e^-4	0.795	INTRON CG4080	TF binding site BDTNP1_TFBS_dl
X	19170916	X_19170916_DEL [dm3] X_19276883_DEL [dm6]	CC	C	2.678e^-4	0.795	UTR_5_PRIME CG32536 UPSTREAM CG32537 DOWNSTREAM CG8028
2R	17136908	2R_17136908_SNP [dm3] 2R_21249403_SNP [dm6]	C	A	2.684e^-4	0.795	INTRON ASPP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	3599589	2R_3599589_SNP [dm3] 2R_7712084_SNP [dm6]	A	C	2.689e^-4	0.796	UPSTREAM CG1942 DOWNSTREAM mir-4909 & 1 other INTERGENIC
X	12090182	X_12090182_SNP [dm3] X_12196149_SNP [dm6]	G	A	2.699e^-4	0.797	NON_SYNONYMOUS_CODING Ten-a UTR_5_PRIME Ten-a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	22049189	X_22049189_SNP [dm3] X_22647353_SNP [dm6]	C	T	2.704e^-4	0.797	INTERGENIC	transposable element FlyBase
3R	24667200	3R_24667200_SNP [dm3] 3R_28841478_SNP [dm6]	A	G	2.707e^-4	0.797	INTRON Apc	TF binding site BDTNP1_TFBS_twi
3L	11051699	3L_11051699_SNP [dm3] 3L_11058599_SNP [dm6]	G	A	2.721e^-4	0.797	SYNONYMOUS_CODING CG7888 DOWNSTREAM CG6321	TF binding site mE1_TFBS_cad
3L	2431346	3L_2431346_DEL [dm3] 3L_2431346_DEL [dm6]	TT	T	2.725e^-4	0.797	INTRON CG45186
X	16607838	X_16607838_SNP [dm3] X_16713805_SNP [dm6]	C	A	2.729e^-4	0.797	SYNONYMOUS_CODING CG13008 DOWNSTREAM CG34325	TF binding site mE1_TFBS_cad
2R	3601872	2R_3601872_SNP [dm3] 2R_7714367_SNP [dm6]	A	G	2.730e^-4	0.797	UPSTREAM CG1946 DOWNSTREAM CG1942 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	16060922	2L_16060922_SNP [dm3] 2L_16060922_SNP [dm6]	G	A	2.735e^-4	0.797	INTRON beat-Ia
3L	9752062	3L_9752062_SNP [dm3] 3L_9758962_SNP [dm6]	C	T	2.738e^-4	0.797	INTRON CG42268
2R	8100288	2R_8100288_SNP [dm3] 2R_12212783_SNP [dm6]	A	T	2.747e^-4	0.797	UPSTREAM Sr-CII INTERGENIC
X	18483463	X_18483463_SNP [dm3] X_18589430_SNP [dm6]	T	C	2.755e^-4	0.797	INTERGENIC
3L	10299740	3L_10299740_SNP [dm3] 3L_10306640_SNP [dm6]	G	A	2.757e^-4	0.797	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13309316	3L_13309316_SNP [dm3] 3L_13316216_SNP [dm6]	G	A	2.757e^-4	0.797	INTERGENIC
2L	16242228	2L_16242228_SNP [dm3] 2L_16242228_SNP [dm6]	A	G	2.762e^-4	0.797	NON_SYNONYMOUS_CODING CG42818 DOWNSTREAM CG42817
2R	12273111	2R_12273111_SNP [dm3] 2R_16385606_SNP [dm6]	T	C	2.763e^-4	0.797	UTR_3_PRIME CG43187 UPSTREAM Sema-2b
3R	26866422	3R_26866422_SNP [dm3] 3R_31040700_SNP [dm6]	A	T	2.766e^-4	0.797	INTRON CanA1
3L	13957954	3L_13957954_SNP [dm3] 3L_13964854_SNP [dm6]	A	T	2.768e^-4	0.797	UPSTREAM ssp2 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Ubx
2R	8780724	2R_8780724_SNP [dm3] 2R_12893219_SNP [dm6]	T	C	2.774e^-4	0.797	INTRON vg
3L	9492334	3L_9492334_SNP [dm3] 3L_9499234_SNP [dm6]	G	A	2.777e^-4	0.797	INTRON path
2L	12299822	2L_12299822_SNP [dm3] 2L_12299822_SNP [dm6]	A	T	2.778e^-4	0.797	INTRON aret
3L	10508985	3L_10508985_SNP [dm3] 3L_10515885_SNP [dm6]	A	C	2.785e^-4	0.797	UPSTREAM A2bp1 INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	17274058	X_17274058_SNP [dm3] X_17380025_SNP [dm6]	T	A	2.788e^-4	0.797	INTERGENIC
X	16735520	X_16735520_SNP [dm3] X_16841487_SNP [dm6]	G	A	2.796e^-4	0.798	INTRON RSG7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4531467	2R_4531467_SNP [dm3] 2R_8643962_SNP [dm6]	A	T	2.807e^-4	0.799	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	6424876	X_6424876_DEL [dm3] X_6530843_DEL [dm6]	AA	A	2.809e^-4	0.799	DOWNSTREAM RpL7A & 2 others INTERGENIC
X	15811132	X_15811132_SNP [dm3] X_15917099_SNP [dm6]	C	T	2.818e^-4	0.801	SYNONYMOUS_CODING CG8909	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8557948	2L_8557948_SNP [dm3] 2L_8557948_SNP [dm6]	T	C	2.822e^-4	0.801	INTRON Sema-1a	TF binding site mE1_TFBS_cad
2R	9164356	2R_9164356_SNP [dm3] 2R_13276851_SNP [dm6]	T	G	2.832e^-4	0.801	INTRON Dh31-R
X	12352194	X_12352194_SNP [dm3] X_12458161_SNP [dm6]	G	A	2.833e^-4	0.801	UPSTREAM CG15731 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	8245081	3L_8245081_SNP [dm3] 3L_8251981_SNP [dm6]	C	T	2.849e^-4	0.802	INTRON Dscam4
3L	2999056	3L_2999056_SNP [dm3] 3L_2999056_SNP [dm6]	A	C	2.858e^-4	0.802	INTERGENIC
X	3248899	X_3248899_SNP [dm3] X_3354866_SNP [dm6]	C	G	2.861e^-4	0.802	INTERGENIC
3R	18762524	3R_18762524_SNP [dm3] 3R_22936802_SNP [dm6]	G	A	2.863e^-4	0.802	INTRON klg
3L	4697126	3L_4697126_SNP [dm3] 3L_4697126_SNP [dm6]	A	G	2.872e^-4	0.802	UPSTREAM CG13713 INTRON RhoGEF64C	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	6597327	2L_6597327_SNP [dm3] 2L_6597327_SNP [dm6]	T	A	2.880e^-4	0.802	INTRON CG11319
3L	18394543	3L_18394543_SNP [dm3] 3L_18401443_SNP [dm6]	G	T	2.891e^-4	0.802	INTERGENIC	regulatory region REDfly_CRMs
X	18616634	X_18616634_SNP [dm3] X_18722601_SNP [dm6]	A	T	2.902e^-4	0.802	INTRON CCKLR-17D1
X	6813787	X_6813787_INS [dm3] X_6919754_INS [dm6]	T	TTT	2.904e^-4	0.802	INTRON CG14431
2R	2403787	2R_2403787_SNP [dm3] 2R_6516282_SNP [dm6]	C	A	2.912e^-4	0.802	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	6279113	3R_6279113_SNP [dm3] 3R_10453391_SNP [dm6]	C	A	2.914e^-4	0.802	INTERGENIC
X	19876258	X_19876258_SNP [dm3] X_19982225_SNP [dm6]	T	C	2.917e^-4	0.802	INTERGENIC
3R	4126940	3R_4126940_SNP [dm3] 3R_8301218_SNP [dm6]	A	G	2.920e^-4	0.802	UPSTREAM mRpL1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	259863	X_259863_SNP [dm3] X_365830_SNP [dm6]	A	T	2.938e^-4	0.802	INTRON CG32816 & 1 other	regulatory region REDfly_CRMs
2L	10896688	2L_10896688_SNP [dm3] 2L_10896688_SNP [dm6]	G	T	2.940e^-4	0.802	INTERGENIC
3R	10059193	3R_10059193_SNP [dm3] 3R_14233471_SNP [dm6]	T	A	2.945e^-4	0.802	INTERGENIC
2L	16242452	2L_16242452_SNP [dm3] 2L_16242452_SNP [dm6]	C	T	2.960e^-4	0.802	SYNONYMOUS_CODING CG42818 DOWNSTREAM CG42817
3R	7597608	3R_7597608_SNP [dm3] 3R_11771886_SNP [dm6]	A	T	2.962e^-4	0.802	UPSTREAM l_3_neo38 INTRON l_3_neo38	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17946412	X_17946412_SNP [dm3] X_18052379_SNP [dm6]	A	G	2.969e^-4	0.802	INTRON Sh
2R	8100579	2R_8100579_SNP [dm3] 2R_12213074_SNP [dm6]	A	G	2.970e^-4	0.802	UPSTREAM Sr-CII & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	16060769	2L_16060769_SNP [dm3] 2L_16060769_SNP [dm6]	A	T	2.974e^-4	0.802	INTRON beat-Ia
3L	1496642	3L_1496642_SNP [dm3] 3L_1496642_SNP [dm6]	C	G	2.978e^-4	0.802	UTR_5_PRIME CG12084 DOWNSTREAM pUf68	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1496643	3L_1496643_SNP [dm3] 3L_1496643_SNP [dm6]	C	T	2.978e^-4	0.802	UTR_5_PRIME CG12084 DOWNSTREAM pUf68	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10957121	3L_10957121_SNP [dm3] 3L_10964021_SNP [dm6]	G	C	2.981e^-4	0.802	INTERGENIC
3L	2296480	3L_2296480_SNP [dm3] 3L_2296480_SNP [dm6]	A	T	2.987e^-4	0.802	INTRON MsR2
3R	7598188	3R_7598188_SNP [dm3] 3R_11772466_SNP [dm6]	C	T	2.990e^-4	0.802	UPSTREAM l_3_neo38 INTRON l_3_neo38	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	6332433	2R_6332433_MNP [dm3] 2R_10444928_MNP [dm6]	TTAA	CATT	2.992e^-4	0.802	UPSTREAM Galphao INTRON Galphao	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6332438	2R_6332438_DEL [dm3] 2R_10444933_DEL [dm6]	GAAAACCA	T	2.992e^-4	0.802	UPSTREAM Galphao INTRON Galphao	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11687822	2L_11687822_SNP [dm3] 2L_11687822_SNP [dm6]	A	G	3.002e^-4	0.802	INTERGENIC
X	346070	X_346070_SNP [dm3] X_452037_SNP [dm6]	G	T	3.009e^-4	0.802	INTRON CG32816	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	10527883	2R_10527883_SNP [dm3] 2R_14640378_SNP [dm6]	A	G	3.010e^-4	0.802	NON_SYNONYMOUS_CODING CG12862 DOWNSTREAM CG42715	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13247801	3L_13247801_SNP [dm3] 3L_13254701_SNP [dm6]	C	T	3.013e^-4	0.802	INTRON caps
3L	24044294	3L_24044294_SNP [dm3] 3L_24051194_SNP [dm6]	T	C	3.021e^-4	0.802	INTERGENIC
X	19748462	X_19748462_SNP [dm3] X_19854429_SNP [dm6]	C	T	3.022e^-4	0.802	SPLICE_SITE_REGION Nup205 INTRON Nup205	TF binding site mE1_TFBS_chinmo
3L	4212985	3L_4212985_SNP [dm3] 3L_4212985_SNP [dm6]	C	T	3.026e^-4	0.802	UPSTREAM Cpr64Ac INTRON CG43367	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13582527	3R_13582527_SNP [dm3] 3R_17756805_SNP [dm6]	T	G	3.029e^-4	0.802	INTRON TyrR	TF binding site mE1_TFBS_chinmo
X	17937276	X_17937276_SNP [dm3] X_18043243_SNP [dm6]	A	T	3.031e^-4	0.802	UPSTREAM CG15373 INTRON Sh
2L	7139730	2L_7139730_SNP [dm3] 2L_7139730_SNP [dm6]	A	C	3.032e^-4	0.802	INTRON Pvf3	TF binding site BDTNP1_TFBS_slp1
3R	21994263	3R_21994263_SNP [dm3] 3R_26168541_SNP [dm6]	A	C	3.034e^-4	0.802	INTERGENIC
3L	14676229	3L_14676229_SNP [dm3] 3L_14683129_SNP [dm6]	C	A	3.038e^-4	0.802	INTRON ome
2L	4548273	2L_4548273_SNP [dm3] 2L_4548273_SNP [dm6]	G	A	3.039e^-4	0.802	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7308425	2R_7308425_SNP [dm3] 2R_11420920_SNP [dm6]	T	C	3.040e^-4	0.802	INTRON Drip
3R	24461524	3R_24461524_SNP [dm3] 3R_28635802_SNP [dm6]	A	G	3.041e^-4	0.802	UPSTREAM CG10011 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3R	20462426	3R_20462426_SNP [dm3] 3R_24636704_SNP [dm6]	A	G	3.048e^-4	0.802	SYNONYMOUS_CODING puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1496656	3L_1496656_DEL [dm3] 3L_1496656_DEL [dm6]	TGT	T	3.057e^-4	0.802	UPSTREAM CG12084 DOWNSTREAM pUf68 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	7306148	2L_7306148_SNP [dm3] 2L_7306148_SNP [dm6]	G	A	3.059e^-4	0.802	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	15669005	X_15669005_SNP [dm3] X_15774972_SNP [dm6]	A	T	3.082e^-4	0.802	SYNONYMOUS_CODING CG43672
X	3166649	X_3166649_SNP [dm3] X_3272616_SNP [dm6]	T	C	3.098e^-4	0.802	INTRON dnc
2R	12585454	2R_12585454_SNP [dm3] 2R_16697949_SNP [dm6]	G	T	3.098e^-4	0.802	INTRON CG30463
3R	24597093	3R_24597093_SNP [dm3] 3R_28771371_SNP [dm6]	A	G	3.107e^-4	0.802	INTERGENIC
2L	13743347	2L_13743347_SNP [dm3] 2L_13743347_SNP [dm6]	C	T	3.110e^-4	0.802	INTERGENIC
X	19390854	X_19390854_SNP [dm3] X_19496821_SNP [dm6]	T	C	3.121e^-4	0.802	UPSTREAM CR44340 INTRON Pfrx & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	14322450	3R_14322450_SNP [dm3] 3R_18496728_SNP [dm6]	T	C	3.128e^-4	0.802	INTRON fru
2R	9172436	2R_9172436_SNP [dm3] 2R_13284931_SNP [dm6]	A	T	3.129e^-4	0.802	INTRON Dh31-R
2R	5486581	2R_5486581_SNP [dm3] 2R_9599076_SNP [dm6]	C	A	3.132e^-4	0.802	NON_SYNONYMOUS_CODING CG30338 DOWNSTREAM CG30340 INTRON CG1902 & 1 other	TF binding site mE1_TFBS_chinmo
X	18376935	X_18376935_SNP [dm3] X_18482902_SNP [dm6]	T	C	3.139e^-4	0.802	INTRON Hayan
2L	5839888	2L_5839888_SNP [dm3] 2L_5839888_SNP [dm6]	T	A	3.145e^-4	0.802	INTRON TrissinR
3R	19693808	3R_19693808_SNP [dm3] 3R_23868086_SNP [dm6]	G	A	3.147e^-4	0.802	INTRON Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2L	4747541	2L_4747541_SNP [dm3] 2L_4747541_SNP [dm6]	A	G	3.149e^-4	0.802	INTRON CG15630
2L	12280411	2L_12280411_SNP [dm3] 2L_12280411_SNP [dm6]	G	T	3.155e^-4	0.802	INTRON aret
3L	6913897	3L_6913897_SNP [dm3] 3L_6920797_SNP [dm6]	T	G	3.160e^-4	0.802	INTERGENIC
X	16735481	X_16735481_DEL [dm3] X_16841448_DEL [dm6]	GA	T	3.162e^-4	0.802	INTRON RSG7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16735514	X_16735514_SNP [dm3] X_16841481_SNP [dm6]	T	A	3.162e^-4	0.802	INTRON RSG7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18180170	X_18180170_SNP [dm3] X_18286137_SNP [dm6]	C	T	3.164e^-4	0.802	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr mE1_TFBS_Trl
2R	14528923	2R_14528923_SNP [dm3] 2R_18641418_SNP [dm6]	T	G	3.166e^-4	0.802	UTR_3_PRIME SP2637 DOWNSTREAM CheA56a INTRON SP2637	TF binding site mE1_TFBS_cad
2L	3966909	2L_3966909_SNP [dm3] 2L_3966909_SNP [dm6]	A	G	3.167e^-4	0.802	INTRON fred
3L	10536562	3L_10536562_SNP [dm3] 3L_10543462_SNP [dm6]	T	G	3.169e^-4	0.802	INTRON A2bp1
3R	14167960	3R_14167960_SNP [dm3] 3R_18342238_SNP [dm6]	T	C	3.170e^-4	0.802	INTRON CG15803
2L	14906306	2L_14906306_SNP [dm3] 2L_14906306_SNP [dm6]	T	C	3.174e^-4	0.802	INTERGENIC
X	3999706	X_3999706_SNP [dm3] X_4105673_SNP [dm6]	G	T	3.183e^-4	0.802	UTR_3_PRIME brn UPSTREAM cib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3R	23087756	3R_23087756_SNP [dm3] 3R_27262034_SNP [dm6]	T	C	3.186e^-4	0.802	DOWNSTREAM CR44049 INTRON woc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13238935	2R_13238935_INS [dm3] 2R_17351430_INS [dm6]	T	TT	3.186e^-4	0.802	INTRON mbl
3L	2295617	3L_2295617_SNP [dm3] 3L_2295617_SNP [dm6]	C	T	3.187e^-4	0.802	INTRON MsR2
2L	16023263	2L_16023263_SNP [dm3] 2L_16023263_SNP [dm6]	T	C	3.187e^-4	0.802	INTRON beat-Ic
2L	16060756	2L_16060756_SNP [dm3] 2L_16060756_SNP [dm6]	T	C	3.189e^-4	0.802	INTRON beat-Ia
3R	18380206	3R_18380206_SNP [dm3] 3R_22554484_SNP [dm6]	G	A	3.190e^-4	0.802	UPSTREAM bond INTRON bond
3L	22136234	3L_22136234_SNP [dm3] 3L_22143134_SNP [dm6]	A	G	3.191e^-4	0.802	INTRON olf413	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	5476344	2R_5476344_SNP [dm3] 2R_9588839_SNP [dm6]	T	A	3.199e^-4	0.802	UPSTREAM CG1827 DOWNSTREAM RpL31 INTRON clos	TF binding site mE1_TFBS_cad
3L	13019613	3L_13019613_SNP [dm3] 3L_13026513_SNP [dm6]	C	G	3.199e^-4	0.802	UPSTREAM Zmynd10 INTERGENIC
2L	8351528	2L_8351528_SNP [dm3] 2L_8351528_SNP [dm6]	A	T	3.201e^-4	0.802	UPSTREAM Mur29B DOWNSTREAM CG7778 INTERGENIC
2R	12352213	2R_12352213_SNP [dm3] 2R_16464708_SNP [dm6]	A	G	3.208e^-4	0.802	INTERGENIC
X	17941803	X_17941803_SNP [dm3] X_18047770_SNP [dm6]	C	G	3.210e^-4	0.802	SYNONYMOUS_CODING CG15373 INTRON Sh	TF binding site mE1_TFBS_chinmo
2L	12280729	2L_12280729_SNP [dm3] 2L_12280729_SNP [dm6]	G	A	3.213e^-4	0.802	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	6257887	3R_6257887_SNP [dm3] 3R_10432165_SNP [dm6]	C	G	3.217e^-4	0.802	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13596624	3L_13596624_SNP [dm3] 3L_13603524_SNP [dm6]	A	G	3.220e^-4	0.802	INTRON bru-3
3L	17220133	3L_17220133_SNP [dm3] 3L_17227033_SNP [dm6]	T	G	3.226e^-4	0.802	INTRON Rbp6
2L	7650534	2L_7650534_SNP [dm3] 2L_7650534_SNP [dm6]	T	C	3.230e^-4	0.802	INTRON Slob
3R	18761009	3R_18761009_SNP [dm3] 3R_22935287_SNP [dm6]	C	G	3.234e^-4	0.802	INTRON klg
X	17935632	X_17935632_SNP [dm3] X_18041599_SNP [dm6]	C	T	3.234e^-4	0.802	INTRON Sh
3R	18762934	3R_18762934_SNP [dm3] 3R_22937212_SNP [dm6]	C	T	3.236e^-4	0.802	INTRON klg
3R	4876234	3R_4876234_SNP [dm3] 3R_9050512_SNP [dm6]	T	A	3.239e^-4	0.802	UTR_5_PRIME Nmdmc UPSTREAM Mst85C INTRON Mst85C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	2528349	X_2528349_SNP [dm3] X_2634316_SNP [dm6]	G	A	3.246e^-4	0.802	DOWNSTREAM PI4KIIIalpha INTRON sgg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	1901484	3R_1901484_SNP [dm3] 3R_6075762_SNP [dm6]	T	C	3.249e^-4	0.802	INTERGENIC
3L	11297757	3L_11297757_SNP [dm3] 3L_11304657_SNP [dm6]	C	A	3.250e^-4	0.802	INTERGENIC
2L	3736283	2L_3736283_SNP [dm3] 2L_3736283_SNP [dm6]	T	C	3.253e^-4	0.802	INTRON CG10019
2R	9577488	2R_9577488_SNP [dm3] 2R_13689983_SNP [dm6]	G	T	3.263e^-4	0.802	INTRON fas
X	17939728	X_17939728_SNP [dm3] X_18045695_SNP [dm6]	A	G	3.263e^-4	0.802	SYNONYMOUS_CODING CG15373 INTRON Sh
3R	10014453	3R_10014453_SNP [dm3] 3R_14188731_SNP [dm6]	T	C	3.263e^-4	0.802	INTRON Dop1R1
X	4623359	X_4623359_SNP [dm3] X_4729326_SNP [dm6]	A	C	3.265e^-4	0.802	UTR_3_PRIME Proc-R DOWNSTREAM Proc-R
2R	9309812	2R_9309812_SNP [dm3] 2R_13422307_SNP [dm6]	T	C	3.267e^-4	0.802	DOWNSTREAM CG30060 INTRON CG42321
2L	4747011	2L_4747011_SNP [dm3] 2L_4747011_SNP [dm6]	T	C	3.268e^-4	0.802	INTRON CG15630
2L	11662274	2L_11662274_SNP [dm3] 2L_11662274_SNP [dm6]	A	C	3.286e^-4	0.806	UPSTREAM CR44479 & 1 other EXON CR44480
3R	9586764	3R_9586764_SNP [dm3] 3R_13761042_SNP [dm6]	A	C	3.292e^-4	0.806	UTR_3_PRIME CG34383 INTRON CG34383
3L	10299870	3L_10299870_SNP [dm3] 3L_10306770_SNP [dm6]	C	T	3.303e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	17937422	X_17937422_SNP [dm3] X_18043389_SNP [dm6]	C	G	3.305e^-4	0.807	UPSTREAM CG15373 INTRON Sh
2R	9164276	2R_9164276_SNP [dm3] 2R_13276771_SNP [dm6]	A	G	3.312e^-4	0.808	INTRON Dh31-R
2L	9599018	2L_9599018_SNP [dm3] 2L_9599018_SNP [dm6]	C	T	3.318e^-4	0.808	SYNONYMOUS_CODING CG4382	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11493911	2R_11493911_INS [dm3] 2R_15606406_INS [dm6]	C	CC	3.322e^-4	0.808	INTERGENIC
3R	15143713	3R_15143713_DEL [dm3] 3R_19317991_DEL [dm6]	TTGAAAAGTCT...	T	3.344e^-4	0.81	INTRON Dl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	4942207	3R_4942207_SNP [dm3] 3R_9116485_SNP [dm6]	C	A	3.347e^-4	0.81	INTRON pum
2L	17544230	2L_17544230_SNP [dm3] 2L_17544230_SNP [dm6]	C	T	3.350e^-4	0.81	INTERGENIC	TF binding site mE1_TFBS_kn
3L	12816587	3L_12816587_SNP [dm3] 3L_12823487_SNP [dm6]	C	T	3.352e^-4	0.81	INTRON CG42588
3R	17719111	3R_17719111_SNP [dm3] 3R_21893389_SNP [dm6]	A	G	3.353e^-4	0.81	INTRON CG6678	TF binding site mE1_TFBS_cad
X	6813812	X_6813812_SNP [dm3] X_6919779_SNP [dm6]	C	T	3.365e^-4	0.81	INTRON CG14431
X	3898662	X_3898662_SNP [dm3] X_4004629_SNP [dm6]	G	A	3.377e^-4	0.81	INTERGENIC
3L	9749759	3L_9749759_SNP [dm3] 3L_9756659_SNP [dm6]	G	T	3.378e^-4	0.81	INTRON CG42268
3R	21913317	3R_21913317_SNP [dm3] 3R_26087595_SNP [dm6]	A	G	3.382e^-4	0.81	INTRON dys
2L	10082129	2L_10082129_SNP [dm3] 2L_10082129_SNP [dm6]	A	T	3.384e^-4	0.81	INTRON CG44153	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19400265	2L_19400265_SNP [dm3] 2L_19400265_SNP [dm6]	G	T	3.387e^-4	0.81	DOWNSTREAM Pax INTERGENIC
2L	2064868	2L_2064868_DEL [dm3] 2L_2064868_DEL [dm6]	GTTCTCTAT	G	3.387e^-4	0.81	INTRON dpr3
3L	6053082	3L_6053082_SNP [dm3] 3L_6059982_SNP [dm6]	C	T	3.391e^-4	0.81	SYNONYMOUS_CODING CG6592 DOWNSTREAM CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	10377020	2L_10377020_SNP [dm3] 2L_10377020_SNP [dm6]	T	A	3.396e^-4	0.81	INTRON dpr19	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	7109294	X_7109294_SNP [dm3] X_7215261_SNP [dm6]	C	T	3.403e^-4	0.81	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
X	18059794	X_18059794_SNP [dm3] X_18165761_SNP [dm6]	T	G	3.406e^-4	0.81	INTRON Frq1
2R	11714826	2R_11714826_SNP [dm3] 2R_15827321_SNP [dm6]	T	A	3.407e^-4	0.81	SYNONYMOUS_CODING Poxn INTRON tun	TF binding site mE1_TFBS_chinmo
2L	11974239	2L_11974239_SNP [dm3] 2L_11974239_SNP [dm6]	G	C	3.414e^-4	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3181509	3L_3181509_SNP [dm3] 3L_3181509_SNP [dm6]	C	T	3.421e^-4	0.81	SYNONYMOUS_CODING Girdin
2L	9080281	2L_9080281_SNP [dm3] 2L_9080281_SNP [dm6]	T	A	3.421e^-4	0.81	INTERGENIC
2R	6875086	2R_6875086_SNP [dm3] 2R_10987581_SNP [dm6]	G	C	3.423e^-4	0.81	INTRON luna
2L	9406278	2L_9406278_SNP [dm3] 2L_9406278_SNP [dm6]	G	A	3.428e^-4	0.81	INTRON Shawl
2R	12262636	2R_12262636_SNP [dm3] 2R_16375131_SNP [dm6]	T	C	3.433e^-4	0.81	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17182667	3L_17182667_SNP [dm3] 3L_17189567_SNP [dm6]	C	A	3.436e^-4	0.81	INTRON Rbp6
X	19725926	X_19725926_SNP [dm3] X_19831893_SNP [dm6]	G	A	3.438e^-4	0.81	UTR_3_PRIME pico	TF binding site BDTNP1_TFBS_dl
3R	20465330	3R_20465330_INS [dm3] 3R_24639608_INS [dm6]	A	AAGCAA	3.451e^-4	0.812	DOWNSTREAM puf INTRON puf	TF binding site mE1_TFBS_chinmo
X	706162	X_706162_SNP [dm3] X_812129_SNP [dm6]	C	A	3.459e^-4	0.813	INTRON CG43867
3R	6316709	3R_6316709_SNP [dm3] 3R_10490987_SNP [dm6]	G	A	3.464e^-4	0.813	UPSTREAM CR45576 INTERGENIC	TF binding site mE1_TFBS_HSA
X	18618644	X_18618644_SNP [dm3] X_18724611_SNP [dm6]	A	T	3.472e^-4	0.813	DOWNSTREAM CG42302 INTRON CCKLR-17D1
X	11672311	X_11672311_DEL [dm3] X_11778278_DEL [dm6]	CGTCTGT	C	3.475e^-4	0.813	UTR_5_PRIME dy
2L	16060617	2L_16060617_SNP [dm3] 2L_16060617_SNP [dm6]	T	C	3.487e^-4	0.813	INTRON beat-Ia
3L	9320575	3L_9320575_SNP [dm3] 3L_9327475_SNP [dm6]	C	T	3.489e^-4	0.813	INTERGENIC
X	14711857	X_14711857_DEL [dm3] X_14817824_DEL [dm6]	TTT	T	3.496e^-4	0.813	INTRON rut
3R	4876445	3R_4876445_SNP [dm3] 3R_9050723_SNP [dm6]	T	G	3.498e^-4	0.813	UPSTREAM Mst85C & 1 other INTRON Mst85C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	19543804	X_19543804_SNP [dm3] X_19649771_SNP [dm6]	C	T	3.503e^-4	0.813	SYNONYMOUS_CODING Ranbp21	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16152343	X_16152343_INS [dm3] X_16258310_INS [dm6]	T	TT	3.505e^-4	0.813	INTERGENIC
3R	4676894	3R_4676894_SNP [dm3] 3R_8851172_SNP [dm6]	A	G	3.509e^-4	0.813	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11477977	2L_11477977_SNP [dm3] 2L_11477977_SNP [dm6]	T	C	3.517e^-4	0.813	INTERGENIC
3L	2300520	3L_2300520_SNP [dm3] 3L_2300520_SNP [dm6]	G	A	3.519e^-4	0.813	SYNONYMOUS_CODING MsR2 UTR_3_PRIME MsR2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	284645	X_284645_SNP [dm3] X_390612_SNP [dm6]	C	G	3.528e^-4	0.813	INTRON CG32816
X	15451729	X_15451729_SNP [dm3] X_15557696_SNP [dm6]	A	C	3.532e^-4	0.813	INTERGENIC
3L	1498056	3L_1498056_SNP [dm3] 3L_1498056_SNP [dm6]	A	T	3.535e^-4	0.813	SYNONYMOUS_CODING pUf68 DOWNSTREAM scaRNA:MeU2-48	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	293134	X_293134_SNP [dm3] X_399101_SNP [dm6]	T	A	3.536e^-4	0.813	INTRON CG32816	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12518876	3L_12518876_SNP [dm3] 3L_12525776_SNP [dm6]	T	C	3.536e^-4	0.813	DOWNSTREAM ver INTRON eIF-2beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24709136	3R_24709136_SNP [dm3] 3R_28883414_SNP [dm6]	A	G	3.540e^-4	0.813	UPSTREAM CG14526 DOWNSTREAM CG14527 INTRON CG33203
3R	4762231	3R_4762231_SNP [dm3] 3R_8936509_SNP [dm6]	C	T	3.540e^-4	0.813	NON_SYNONYMOUS_CODING osk
2R	5481199	2R_5481199_SNP [dm3] 2R_9593694_SNP [dm6]	C	G	3.547e^-4	0.813	NON_SYNONYMOUS_CODING clos UPSTREAM CG1902 & 1 other DOWNSTREAM Map60	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	7319964	2R_7319964_SNP [dm3] 2R_11432459_SNP [dm6]	G	A	3.551e^-4	0.813	DOWNSTREAM CR43771 INTERGENIC
2R	5475950	2R_5475950_SNP [dm3] 2R_9588445_SNP [dm6]	C	T	3.568e^-4	0.813	NON_SYNONYMOUS_CODING clos UPSTREAM CG1827 DOWNSTREAM RpL31	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16242163	2L_16242163_SNP [dm3] 2L_16242163_SNP [dm6]	G	T	3.575e^-4	0.813	NON_SYNONYMOUS_CODING CG42818 DOWNSTREAM CG42817
2R	12475515	2R_12475515_SNP [dm3] 2R_16588010_SNP [dm6]	A	G	3.579e^-4	0.813	SYNONYMOUS_CODING CG8311	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8481104	2L_8481104_SNP [dm3] 2L_8481104_SNP [dm6]	T	G	3.583e^-4	0.813	UPSTREAM tRNA:CR31896 DOWNSTREAM tRNA:CR31892 INTRON d
X	249435	X_249435_SNP [dm3] X_355402_SNP [dm6]	G	A	3.585e^-4	0.813	INTRON CG32816	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_cad
2L	10910613	2L_10910613_SNP [dm3] 2L_10910613_SNP [dm6]	C	T	3.585e^-4	0.813	UTR_5_PRIME CG14069 UPSTREAM CG14069
3L	12815645	3L_12815645_SNP [dm3] 3L_12822545_SNP [dm6]	G	A	3.591e^-4	0.813	SYNONYMOUS_CODING CG42588
3L	11102493	3L_11102493_SNP [dm3] 3L_11109393_SNP [dm6]	G	T	3.593e^-4	0.813	NON_SYNONYMOUS_CODING CG34012 UPSTREAM CG7638 DOWNSTREAM CG12522
2L	7241334	2L_7241334_SNP [dm3] 2L_7241334_SNP [dm6]	A	G	3.605e^-4	0.813	UPSTREAM Ndae1 INTRON Ndae1
X	18942583	X_18942583_SNP [dm3] X_19048550_SNP [dm6]	T	C	3.611e^-4	0.813	INTERGENIC
X	12329530	X_12329530_SNP [dm3] X_12435497_SNP [dm6]	T	C	3.616e^-4	0.813	INTRON Pkcdelta
3L	16141913	3L_16141913_SNP [dm3] 3L_16148813_SNP [dm6]	T	C	3.622e^-4	0.813	UTR_5_PRIME CG5151
2L	12280104	2L_12280104_SNP [dm3] 2L_12280104_SNP [dm6]	T	A	3.643e^-4	0.813	INTRON aret
X	256347	X_256347_INS [dm3] X_362314_INS [dm6]	G	GG	3.648e^-4	0.813	UPSTREAM yar INTRON CG32816	regulatory region REDfly_CRMs
2L	6098867	2L_6098867_SNP [dm3] 2L_6098867_SNP [dm6]	T	C	3.655e^-4	0.813	UTR_5_PRIME CG9175 INTRON CG9175	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	16070013	X_16070013_SNP [dm3] X_16175980_SNP [dm6]	G	C	3.660e^-4	0.813	INTERGENIC
3L	9525895	3L_9525895_SNP [dm3] 3L_9532795_SNP [dm6]	G	T	3.661e^-4	0.813	INTERGENIC
3R	22160620	3R_22160620_DEL [dm3] 3R_26334898_DEL [dm6]	GGGAG	A	3.671e^-4	0.813	INTRON CG33970
X	4002219	X_4002219_SNP [dm3] X_4108186_SNP [dm6]	C	G	3.686e^-4	0.813	UPSTREAM cib INTRON cib	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_sens
2L	10886886	2L_10886886_SNP [dm3] 2L_10886886_SNP [dm6]	C	A	3.696e^-4	0.813	DOWNSTREAM CG14071 INTRON CR44490	TF binding site mE1_TFBS_inv
2R	6524657	2R_6524657_SNP [dm3] 2R_10637152_SNP [dm6]	A	T	3.702e^-4	0.813	INTRON CG11883
X	18182307	X_18182307_INS [dm3] X_18288274_INS [dm6]	A	AT	3.716e^-4	0.813	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	15498779	3R_15498779_SNP [dm3] 3R_19673057_SNP [dm6]	T	C	3.717e^-4	0.813	UPSTREAM tRNA:V3b:92Ba INTRON Naam
3R	25806545	3R_25806545_SNP [dm3] 3R_29980823_SNP [dm6]	A	G	3.719e^-4	0.813	INTERGENIC
2L	14419081	2L_14419081_SNP [dm3] 2L_14419081_SNP [dm6]	T	A	3.719e^-4	0.813	INTERGENIC
3R	20913179	3R_20913179_SNP [dm3] 3R_25087457_SNP [dm6]	A	T	3.721e^-4	0.813	INTERGENIC	transposable element FlyBase
2R	4692249	2R_4692249_SNP [dm3] 2R_8804744_SNP [dm6]	C	T	3.728e^-4	0.813	INTRON sns	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13484819	3L_13484819_SNP [dm3] 3L_13491719_SNP [dm6]	C	T	3.737e^-4	0.813	INTRON Tgi
3L	12853893	3L_12853893_SNP [dm3] 3L_12860793_SNP [dm6]	T	C	3.744e^-4	0.813	DOWNSTREAM CG10943 INTRON CG32107
2L	3968814	2L_3968814_SNP [dm3] 2L_3968814_SNP [dm6]	G	T	3.747e^-4	0.813	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	12332068	X_12332068_SNP [dm3] X_12438035_SNP [dm6]	C	T	3.756e^-4	0.813	INTRON Pkcdelta
2L	8481022	2L_8481022_SNP [dm3] 2L_8481022_SNP [dm6]	G	T	3.760e^-4	0.813	UPSTREAM tRNA:CR31896 INTRON d
3L	732230	3L_732230_DEL [dm3] 3L_732230_DEL [dm6]	TTCTTGAT	T	3.761e^-4	0.813	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	14782457	X_14782457_SNP [dm3] X_14888424_SNP [dm6]	A	G	3.769e^-4	0.813	SYNONYMOUS_CODING CG9514 INTRON Flo2
2R	14567611	2R_14567611_SNP [dm3] 2R_18680106_SNP [dm6]	A	T	3.772e^-4	0.813	INTRON CG44434 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3R	3991328	3R_3991328_SNP [dm3] 3R_8165606_SNP [dm6]	G	T	3.779e^-4	0.813	INTRON grn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	959303	3L_959303_SNP [dm3] 3L_959303_SNP [dm6]	G	T	3.781e^-4	0.813	UPSTREAM Glut1 INTRON Glut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	19367032	X_19367032_SNP [dm3] X_19472999_SNP [dm6]	G	A	3.786e^-4	0.813	INTERGENIC
X	6505669	X_6505669_SNP [dm3] X_6611636_SNP [dm6]	C	A	3.787e^-4	0.813	INTRON pigs
X	18476155	X_18476155_SNP [dm3] X_18582122_SNP [dm6]	A	G	3.790e^-4	0.813	INTERGENIC
2R	14574714	2R_14574714_SNP [dm3] 2R_18687209_SNP [dm6]	G	A	3.790e^-4	0.813	UPSTREAM CG42855 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10508949	3L_10508949_SNP [dm3] 3L_10515849_SNP [dm6]	T	C	3.791e^-4	0.813	UPSTREAM A2bp1 INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	6818579	2L_6818579_SNP [dm3] 2L_6818579_SNP [dm6]	G	A	3.793e^-4	0.813	INTERGENIC	TF binding site mE1_TFBS_cad
2R	7606880	2R_7606880_SNP [dm3] 2R_11719375_SNP [dm6]	C	T	3.804e^-4	0.813	INTRON pyr
3L	7869568	3L_7869568_SNP [dm3] 3L_7876468_SNP [dm6]	T	A	3.808e^-4	0.813	INTRON CG32365
3R	24581159	3R_24581159_SNP [dm3] 3R_28755437_SNP [dm6]	C	G	3.809e^-4	0.813	DOWNSTREAM CG9997 INTERGENIC
3R	17005599	3R_17005599_SNP [dm3] 3R_21179877_SNP [dm6]	A	T	3.812e^-4	0.813	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc
2L	17544229	2L_17544229_SNP [dm3] 2L_17544229_SNP [dm6]	T	C	3.822e^-4	0.813	INTERGENIC	TF binding site mE1_TFBS_kn
2L	6711851	2L_6711851_SNP [dm3] 2L_6711851_SNP [dm6]	T	C	3.831e^-4	0.813	UTR_3_PRIME AkhR INTRON AkhR
2R	11507329	2R_11507329_SNP [dm3] 2R_15619824_SNP [dm6]	C	T	3.831e^-4	0.813	INTRON CG42524
X	4104923	X_4104923_SNP [dm3] X_4210890_SNP [dm6]	G	A	3.834e^-4	0.813	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14321398	X_14321398_SNP [dm3] X_14427365_SNP [dm6]	A	G	3.835e^-4	0.813	INTRON dpr8
X	9460484	X_9460484_SNP [dm3] X_9566451_SNP [dm6]	G	A	3.840e^-4	0.813	SYNONYMOUS_CODING Cubn	TF binding site mE1_TFBS_cad
3L	16875731	3L_16875731_SNP [dm3] 3L_16882631_SNP [dm6]	T	A	3.848e^-4	0.813	INTRON Lmpt
2R	14574384	2R_14574384_SNP [dm3] 2R_18686879_SNP [dm6]	A	C	3.858e^-4	0.813	UPSTREAM CG42855 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6463063	3R_6463063_DEL [dm3] 3R_10637341_DEL [dm6]	AA	C	3.864e^-4	0.813	INTRON hth
2R	13180085	2R_13180085_SNP [dm3] 2R_17292580_SNP [dm6]	G	A	3.869e^-4	0.813	INTRON mbl
X	13182300	X_13182300_SNP [dm3] X_13288267_SNP [dm6]	C	T	3.885e^-4	0.813	UTR_5_PRIME CG15744 DOWNSTREAM CG15743	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	24708808	3R_24708808_SNP [dm3] 3R_28883086_SNP [dm6]	T	C	3.886e^-4	0.813	UPSTREAM CG14526 DOWNSTREAM CG14527 INTRON CG33203
2R	16981206	2R_16981206_SNP [dm3] 2R_21093701_SNP [dm6]	A	G	3.887e^-4	0.813	INTRON CG34396
3L	8052163	3L_8052163_DEL [dm3] 3L_8059063_DEL [dm6]	GTAG	G	3.889e^-4	0.813	UPSTREAM bip1 INTERGENIC	TF binding site mE1_TFBS_cad
X	17939461	X_17939461_SNP [dm3] X_18045428_SNP [dm6]	A	C	3.892e^-4	0.813	INTRON Sh & 1 other
2L	17722814	2L_17722814_SNP [dm3] 2L_17722814_SNP [dm6]	A	C	3.893e^-4	0.813	INTRON CadN	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19861779	2L_19861779_SNP [dm3] 2L_19861779_SNP [dm6]	C	T	3.901e^-4	0.813	INTRON sick
3L	11662259	3L_11662259_SNP [dm3] 3L_11669159_SNP [dm6]	C	G	3.907e^-4	0.813	INTRON CG32085
X	2080320	X_2080320_SNP [dm3] X_2186287_SNP [dm6]	C	T	3.909e^-4	0.813	UPSTREAM CG17777 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12472522	2R_12472522_SNP [dm3] 2R_16585017_SNP [dm6]	T	C	3.915e^-4	0.813	SYNONYMOUS_CODING Cdk4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2L	9324665	2L_9324665_SNP [dm3] 2L_9324665_SNP [dm6]	T	C	3.916e^-4	0.813	INTERGENIC
2R	12585989	2R_12585989_SNP [dm3] 2R_16698484_SNP [dm6]	T	G	3.922e^-4	0.813	INTRON CG30463
2L	4867221	2L_4867221_SNP [dm3] 2L_4867221_SNP [dm6]	G	T	3.924e^-4	0.813	INTRON pog
2L	6999122	2L_6999122_SNP [dm3] 2L_6999122_SNP [dm6]	G	A	3.924e^-4	0.813	INTRON uif
2L	11662260	2L_11662260_SNP [dm3] 2L_11662260_SNP [dm6]	C	T	3.924e^-4	0.813	UPSTREAM CR44479 & 1 other EXON CR44480
2R	9526040	2R_9526040_INS [dm3] 2R_13638535_INS [dm6]	G	GT	3.926e^-4	0.813	INTRON fas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10719930	2L_10719930_SNP [dm3] 2L_10719930_SNP [dm6]	C	T	3.926e^-4	0.813	INTERGENIC
2R	11485769	2R_11485769_SNP [dm3] 2R_15598264_SNP [dm6]	A	C	3.931e^-4	0.813	INTERGENIC
3L	1498829	3L_1498829_SNP [dm3] 3L_1498829_SNP [dm6]	G	A	3.936e^-4	0.813	DOWNSTREAM scaRNA:MeU2-48 INTRON pUf68	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16367784	3L_16367784_SNP [dm3] 3L_16374684_SNP [dm6]	A	T	3.939e^-4	0.813	INTRON roq
3L	16367785	3L_16367785_SNP [dm3] 3L_16374685_SNP [dm6]	T	G	3.939e^-4	0.813	INTRON roq
3R	10040723	3R_10040723_SNP [dm3] 3R_14215001_SNP [dm6]	T	A	3.945e^-4	0.813	UPSTREAM Dop1R1 DOWNSTREAM CG9649 INTERGENIC
3L	13311759	3L_13311759_SNP [dm3] 3L_13318659_SNP [dm6]	G	C	3.946e^-4	0.813	INTERGENIC
3R	26865879	3R_26865879_SNP [dm3] 3R_31040157_SNP [dm6]	C	A	3.950e^-4	0.813	SYNONYMOUS_CODING CanA1	TF binding site mE1_TFBS_sbb
X	17935657	X_17935657_SNP [dm3] X_18041624_SNP [dm6]	C	T	3.953e^-4	0.813	INTRON Sh
3L	11174678	3L_11174678_SNP [dm3] 3L_11181578_SNP [dm6]	G	A	3.963e^-4	0.813	INTRON GlcAT-P
3R	17719789	3R_17719789_SNP [dm3] 3R_21894067_SNP [dm6]	G	A	3.970e^-4	0.813	INTRON CG6678	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	19539540	X_19539540_SNP [dm3] X_19645507_SNP [dm6]	T	C	3.972e^-4	0.813	SYNONYMOUS_CODING Arp10 DOWNSTREAM Sec61gamma & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9577476	2R_9577476_DEL [dm3] 2R_13689971_DEL [dm6]	TT	T	3.973e^-4	0.813	INTRON fas
3R	10040759	3R_10040759_SNP [dm3] 3R_14215037_SNP [dm6]	T	C	3.977e^-4	0.813	UPSTREAM Dop1R1 DOWNSTREAM CG9649 INTERGENIC
3R	5902101	3R_5902101_SNP [dm3] 3R_10076379_SNP [dm6]	C	T	3.979e^-4	0.813	INTERGENIC
X	17933073	X_17933073_SNP [dm3] X_18039040_SNP [dm6]	G	A	3.982e^-4	0.813	INTRON Sh
3R	20462708	3R_20462708_SNP [dm3] 3R_24636986_SNP [dm6]	T	C	3.987e^-4	0.813	SYNONYMOUS_CODING puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7838429	3L_7838429_SNP [dm3] 3L_7845329_SNP [dm6]	A	C	3.987e^-4	0.813	INTRON Pdp1	regulatory region REDfly_CRMs
3L	4080684	3L_4080684_SNP [dm3] 3L_4080684_SNP [dm6]	T	C	3.987e^-4	0.813	INTRON Gad1
2R	8306128	2R_8306128_SNP [dm3] 2R_12418623_SNP [dm6]	G	T	3.988e^-4	0.813	DOWNSTREAM CG42782 & 1 other INTERGENIC
2L	12280415	2L_12280415_SNP [dm3] 2L_12280415_SNP [dm6]	T	C	3.989e^-4	0.813	INTRON aret
3R	15414015	3R_15414015_SNP [dm3] 3R_19588293_SNP [dm6]	T	C	3.993e^-4	0.813	INTRON Dys
X	720217	X_720217_SNP [dm3] X_826184_SNP [dm6]	G	A	4.003e^-4	0.813	INTRON CG43867	TF binding site mE1_TFBS_h mE1_TFBS_HSA
X	12159194	X_12159194_DEL [dm3] X_12265161_DEL [dm6]	GAAATGGG	G	4.004e^-4	0.813	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	4079086	X_4079086_DEL [dm3] X_4185053_DEL [dm6]	GAAG	G	4.005e^-4	0.813	INTRON Fas2
X	15835223	X_15835223_SNP [dm3] X_15941190_SNP [dm6]	C	T	4.006e^-4	0.813	UTR_5_PRIME CG8924 UPSTREAM Stim	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	10058691	3R_10058691_SNP [dm3] 3R_14232969_SNP [dm6]	T	G	4.011e^-4	0.813	INTERGENIC
2R	7321998	2R_7321998_SNP [dm3] 2R_11434493_SNP [dm6]	T	C	4.017e^-4	0.813	INTERGENIC
X	18885219	X_18885219_SNP [dm3] X_18991186_SNP [dm6]	T	A	4.023e^-4	0.813	INTRON CG43759	TF binding site mE1_TFBS_cad
2R	7322513	2R_7322513_SNP [dm3] 2R_11435008_SNP [dm6]	T	C	4.028e^-4	0.813	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	10165097	3R_10165097_SNP [dm3] 3R_14339375_SNP [dm6]	C	A	4.030e^-4	0.813	INTRON NK7.1
2R	16633694	2R_16633694_SNP [dm3] 2R_20746189_SNP [dm6]	C	A	4.030e^-4	0.813	INTRON dpr
3R	18903224	3R_18903224_SNP [dm3] 3R_23077502_SNP [dm6]	G	A	4.038e^-4	0.813	INTRON CG13830
3R	26357957	3R_26357957_SNP [dm3] 3R_30532235_SNP [dm6]	A	G	4.039e^-4	0.813	UPSTREAM tmod & 1 other EXON CR45553	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	14757473	X_14757473_SNP [dm3] X_14863440_SNP [dm6]	C	A	4.048e^-4	0.813	UTR_3_PRIME CG9518 INTRON Flo2
2R	7324218	2R_7324218_SNP [dm3] 2R_11436713_SNP [dm6]	C	T	4.049e^-4	0.813	INTRON CG7777
3R	16371445	3R_16371445_SNP [dm3] 3R_20545723_SNP [dm6]	G	A	4.054e^-4	0.813	INTRON Stat92E
3L	5317952	3L_5317952_SNP [dm3] 3L_5324852_SNP [dm6]	A	C	4.056e^-4	0.813	INTERGENIC
3L	8056339	3L_8056339_SNP [dm3] 3L_8063239_SNP [dm6]	C	G	4.061e^-4	0.813	UPSTREAM Ect4 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	14322478	3R_14322478_DEL [dm3] 3R_18496756_DEL [dm6]	TGC	T	4.063e^-4	0.813	INTRON fru
X	14297729	X_14297729_SNP [dm3] X_14403696_SNP [dm6]	G	A	4.066e^-4	0.813	INTRON dpr8
2R	1923988	2R_1923988_SNP [dm3] 2R_6036483_SNP [dm6]	G	A	4.080e^-4	0.813	UPSTREAM SCAP DOWNSTREAM CG14591 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
3R	7596856	3R_7596856_SNP [dm3] 3R_11771134_SNP [dm6]	C	A	4.085e^-4	0.813	INTRON l_3_neo38	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	6594069	2L_6594069_SNP [dm3] 2L_6594069_SNP [dm6]	G	A	4.093e^-4	0.813	INTRON CG11319
3R	24090479	3R_24090479_SNP [dm3] 3R_28264757_SNP [dm6]	C	A	4.099e^-4	0.813	UTR_5_PRIME CG43124
2R	4182731	2R_4182731_SNP [dm3] 2R_8295226_SNP [dm6]	C	A	4.099e^-4	0.813	INTERGENIC
X	17932747	X_17932747_SNP [dm3] X_18038714_SNP [dm6]	T	C	4.101e^-4	0.813	INTRON Sh
2R	8464198	2R_8464198_SNP [dm3] 2R_12576693_SNP [dm6]	A	G	4.101e^-4	0.813	SYNONYMOUS_CODING Sin3A UTR_3_PRIME Sin3A
3R	14536349	3R_14536349_INS [dm3] 3R_18710627_INS [dm6]	A	ATACTTGA	4.104e^-4	0.813	INTRON VAChT & 1 other
3R	13906882	3R_13906882_SNP [dm3] 3R_18081160_SNP [dm6]	C	T	4.108e^-4	0.813	SYNONYMOUS_CODING CG14317	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	6723557	X_6723557_SNP [dm3] X_6829524_SNP [dm6]	A	G	4.113e^-4	0.813	SYNONYMOUS_CODING nonC	TF binding site mE1_TFBS_chinmo
3L	17894790	3L_17894790_SNP [dm3] 3L_17901690_SNP [dm6]	T	A	4.115e^-4	0.813	INTRON Prestin
X	17946381	X_17946381_SNP [dm3] X_18052348_SNP [dm6]	C	T	4.119e^-4	0.813	INTRON Sh	TF binding site BDTNP1_TFBS_dl
3L	13286654	3L_13286654_SNP [dm3] 3L_13293554_SNP [dm6]	C	T	4.125e^-4	0.813	INTERGENIC
3R	9865503	3R_9865503_SNP [dm3] 3R_14039781_SNP [dm6]	C	A	4.128e^-4	0.813	INTERGENIC
2R	17967662	2R_17967662_SNP [dm3] 2R_22080157_SNP [dm6]	C	T	4.128e^-4	0.813	UPSTREAM Synj DOWNSTREAM GlcT-1 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	13952882	2R_13952882_SNP [dm3] 2R_18065377_SNP [dm6]	T	G	4.142e^-4	0.813	INTRON CG34386
3R	6283691	3R_6283691_SNP [dm3] 3R_10457969_SNP [dm6]	T	A	4.146e^-4	0.813	INTERGENIC
2L	19387643	2L_19387643_SNP [dm3] 2L_19387643_SNP [dm6]	C	A	4.146e^-4	0.813	SYNONYMOUS_CODING CG17549
3R	4871961	3R_4871961_SNP [dm3] 3R_9046239_SNP [dm6]	G	T	4.150e^-4	0.813	INTRON Nmdmc & 1 other
3R	17762033	3R_17762033_SNP [dm3] 3R_21936311_SNP [dm6]	A	G	4.151e^-4	0.813	INTERGENIC
3L	12713365	3L_12713365_SNP [dm3] 3L_12720265_SNP [dm6]	G	A	4.160e^-4	0.813	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	12316404	3L_12316404_SNP [dm3] 3L_12323304_SNP [dm6]	T	C	4.170e^-4	0.813	INTERGENIC
3L	8022651	3L_8022651_SNP [dm3] 3L_8029551_SNP [dm6]	G	T	4.175e^-4	0.813	UPSTREAM tRNA:CR32370 INTRON nmo	regulatory region REDfly_CRMs
2L	13883337	2L_13883337_SNP [dm3] 2L_13883337_SNP [dm6]	C	G	4.182e^-4	0.813	INTRON CenG1A
X	2600737	X_2600737_SNP [dm3] X_2706704_SNP [dm6]	C	T	4.183e^-4	0.813	SYNONYMOUS_CODING CG2680 DOWNSTREAM eIF2B-beta	TF binding site mE1_TFBS_cad
X	14321399	X_14321399_SNP [dm3] X_14427366_SNP [dm6]	A	G	4.185e^-4	0.813	INTRON dpr8
3R	5374385	3R_5374385_SNP [dm3] 3R_9548663_SNP [dm6]	C	A	4.187e^-4	0.813	INTRON mura EXON CR42549	TF binding site BDTNP1_TFBS_twi
X	11672272	X_11672272_DEL [dm3] X_11778239_DEL [dm6]	CTGTTGC	C	4.187e^-4	0.813	UTR_5_PRIME dy
X	5751514	X_5751514_INS [dm3] X_5857481_INS [dm6]	T	TACGACCCGTTGACCCCGCT...	4.188e^-4	0.813	INTERGENIC
2L	4144579	2L_4144579_SNP [dm3] 2L_4144579_SNP [dm6]	T	A	4.192e^-4	0.813	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	17101763	3R_17101763_SNP [dm3] 3R_21276041_SNP [dm6]	G	A	4.203e^-4	0.813	SYNONYMOUS_CODING CG3301 DOWNSTREAM SIFaR	TF binding site mE1_TFBS_cad
X	11343853	X_11343853_SNP [dm3] X_11449820_SNP [dm6]	A	C	4.206e^-4	0.813	INTRON Evi5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7996646	3L_7996646_INS [dm3] 3L_8003546_INS [dm6]	A	AGTA	4.209e^-4	0.813	INTRON nmo
X	297351	X_297351_SNP [dm3] X_403318_SNP [dm6]	G	T	4.213e^-4	0.813	INTRON CG32816	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	11804691	3R_11804691_SNP [dm3] 3R_15978969_SNP [dm6]	C	T	4.218e^-4	0.813	SYNONYMOUS_CODING Hel89B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14328840	3L_14328840_SNP [dm3] 3L_14335740_SNP [dm6]	C	A	4.221e^-4	0.813	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	15940084	2R_15940084_SNP [dm3] 2R_20052579_SNP [dm6]	G	C	4.229e^-4	0.813	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3062715	X_3062715_SNP [dm3] X_3168682_SNP [dm6]	C	A	4.235e^-4	0.813	SYNONYMOUS_CODING N	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5840164	2L_5840164_SNP [dm3] 2L_5840164_SNP [dm6]	G	A	4.235e^-4	0.813	INTRON TrissinR
X	20731972	X_20731972_SNP [dm3] X_20860945_SNP [dm6]	C	T	4.236e^-4	0.813	INTRON shakB
2R	8571000	2R_8571000_SNP [dm3] 2R_12683495_SNP [dm6]	C	A	4.247e^-4	0.813	INTRON CG8771
X	4104065	X_4104065_SNP [dm3] X_4210032_SNP [dm6]	C	T	4.251e^-4	0.813	INTERGENIC
X	18182456	X_18182456_DEL [dm3] X_18288423_DEL [dm6]	CTTTAC	GA	4.254e^-4	0.813	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	18182317	X_18182317_SNP [dm3] X_18288284_SNP [dm6]	C	G	4.256e^-4	0.813	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	11662791	2R_11662791_SNP [dm3] 2R_15775286_SNP [dm6]	C	A	4.269e^-4	0.813	SYNONYMOUS_CODING Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14635546	2L_14635546_SNP [dm3] 2L_14635546_SNP [dm6]	G	T	4.271e^-4	0.813	INTRON osp
2L	15632264	2L_15632264_DEL [dm3] 2L_15632264_DEL [dm6]	CATCAAC	C	4.272e^-4	0.813	UTR_3_PRIME CG18480
2L	12009986	2L_12009986_INS [dm3] 2L_12009986_INS [dm6]	C	CGC	4.279e^-4	0.813	DOWNSTREAM Rh5 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
X	153638	X_153638_SNP [dm3] X_259605_SNP [dm6]	G	A	4.287e^-4	0.813	SYNONYMOUS_CODING CG13377 EXON CR43906
2L	9542495	2L_9542495_SNP [dm3] 2L_9542495_SNP [dm6]	T	C	4.287e^-4	0.813	UPSTREAM Cpr30B DOWNSTREAM CG17855 INTERGENIC
3R	15582722	3R_15582722_SNP [dm3] 3R_19757000_SNP [dm6]	G	A	4.290e^-4	0.813	INTRON GluClalpha
2R	1916948	2R_1916948_SNP [dm3] 2R_6029443_SNP [dm6]	G	A	4.291e^-4	0.813	SYNONYMOUS_CODING SCAP
3R	27495566	3R_27495566_SNP [dm3] 3R_31669844_SNP [dm6]	C	G	4.292e^-4	0.813	UTR_5_PRIME CG1815	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	4649418	X_4649418_SNP [dm3] X_4755385_SNP [dm6]	G	A	4.294e^-4	0.813	INTERGENIC
2L	17352208	2L_17352208_SNP [dm3] 2L_17352208_SNP [dm6]	C	T	4.297e^-4	0.813	INTERGENIC
3R	17708441	3R_17708441_SNP [dm3] 3R_21882719_SNP [dm6]	A	G	4.309e^-4	0.813	SYNONYMOUS_CODING CG31465 EXON CR45046
3L	16792006	3L_16792006_SNP [dm3] 3L_16798906_SNP [dm6]	T	C	4.315e^-4	0.813	INTRON CG9674
2L	6629201	2L_6629201_SNP [dm3] 2L_6629201_SNP [dm6]	C	G	4.315e^-4	0.813	INTRON Oatp26F	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_cad
X	4103990	X_4103990_SNP [dm3] X_4209957_SNP [dm6]	T	C	4.320e^-4	0.813	INTERGENIC
3R	12650136	3R_12650136_INS [dm3] 3R_16824414_INS [dm6]	G	GT	4.331e^-4	0.813	INTRON abd-A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	10862562	2L_10862562_SNP [dm3] 2L_10862562_SNP [dm6]	G	T	4.333e^-4	0.813	DOWNSTREAM Stam EXON CR43807
X	15495470	X_15495470_SNP [dm3] X_15601437_SNP [dm6]	G	C	4.337e^-4	0.813	INTERGENIC
2R	12442544	2R_12442544_SNP [dm3] 2R_16555039_SNP [dm6]	T	C	4.346e^-4	0.813	SYNONYMOUS_CODING Syn2
2R	11714825	2R_11714825_SNP [dm3] 2R_15827320_SNP [dm6]	G	A	4.352e^-4	0.813	SYNONYMOUS_CODING Poxn INTRON tun	TF binding site mE1_TFBS_chinmo
3R	25851539	3R_25851539_SNP [dm3] 3R_30025817_SNP [dm6]	G	C	4.356e^-4	0.813	INTRON Axn
3R	15499185	3R_15499185_SNP [dm3] 3R_19673463_SNP [dm6]	T	A	4.361e^-4	0.813	INTRON Naam
2L	11477915	2L_11477915_SNP [dm3] 2L_11477915_SNP [dm6]	G	T	4.362e^-4	0.813	INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.417e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.03012

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	7.0129	0.03

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2042 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	11907922	X_11907922_SNP [dm3] X_12013889_SNP [dm6]	A	T	1.985e^-6	0.762	UPSTREAM regucalcin INTRON regucalcin
3R	4875604	3R_4875604_SNP [dm3] 3R_9049882_SNP [dm6]	T	A	2.023e^-6	0.762	UPSTREAM Nmdmc & 1 other INTRON Nmdmc & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	11907867	X_11907867_SNP [dm3] X_12013834_SNP [dm6]	T	C	2.194e^-6	0.762	UPSTREAM regucalcin INTRON regucalcin
X	251358	X_251358_SNP [dm3] X_357325_SNP [dm6]	C	A	3.377e^-6	0.762	INTRON CG32816 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	18231661	2R_18231661_SNP [dm3] 2R_22344156_SNP [dm6]	C	T	3.462e^-6	0.762	INTRON Liprin-gamma
3L	13308940	3L_13308940_SNP [dm3] 3L_13315840_SNP [dm6]	T	A	3.532e^-6	0.762	INTERGENIC
2R	18231652	2R_18231652_SNP [dm3] 2R_22344147_SNP [dm6]	T	G	3.848e^-6	0.762	INTRON Liprin-gamma
X	15669389	X_15669389_SNP [dm3] X_15775356_SNP [dm6]	G	T	4.154e^-6	0.762	NON_SYNONYMOUS_CODING CG43672
X	15669386	X_15669386_SNP [dm3] X_15775353_SNP [dm6]	C	G	4.779e^-6	0.762	SYNONYMOUS_CODING CG43672
X	15385853	X_15385853_SNP [dm3] X_15491820_SNP [dm6]	T	A	4.942e^-6	0.762	INTRON Gmap	TF binding site BDTNP1_TFBS_dl
X	12820358	X_12820358_SNP [dm3] X_12926325_SNP [dm6]	T	A	5.394e^-6	0.762	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	12352257	X_12352257_SNP [dm3] X_12458224_SNP [dm6]	G	T	5.653e^-6	0.762	UPSTREAM CG15731 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	8005476	2L_8005476_SNP [dm3] 2L_8005476_SNP [dm6]	A	G	5.708e^-6	0.762	SYNONYMOUS_CODING Spn28Dc	TF binding site mE1_TFBS_cad
3R	4873741	3R_4873741_SNP [dm3] 3R_9048019_SNP [dm6]	C	A	7.073e^-6	0.762	UPSTREAM Rel & 1 other INTRON Nmdmc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	4874732	3R_4874732_SNP [dm3] 3R_9049010_SNP [dm6]	A	C	7.203e^-6	0.762	UPSTREAM Nmdmc INTRON Nmdmc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	14661409	X_14661409_SNP [dm3] X_14767376_SNP [dm6]	C	T	7.696e^-6	0.762	INTERGENIC
X	11856023	X_11856023_SNP [dm3] X_11961990_SNP [dm6]	G	A	8.088e^-6	0.762	INTRON cac
3R	26812104	3R_26812104_SNP [dm3] 3R_30986382_SNP [dm6]	T	C	9.132e^-6	0.762	INTRON 5-HT7
3R	12919228	3R_12919228_SNP [dm3] 3R_17093506_SNP [dm6]	A	G	9.391e^-6	0.762	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	3898497	X_3898497_SNP [dm3] X_4004464_SNP [dm6]	A	G	1.018e^-5	0.762	INTERGENIC
2R	17398087	2R_17398087_SNP [dm3] 2R_21510582_SNP [dm6]	T	A	1.098e^-5	0.762	INTRON MESK2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3898495	X_3898495_SNP [dm3] X_4004462_SNP [dm6]	A	G	1.232e^-5	0.762	INTERGENIC
2L	6550798	2L_6550798_SNP [dm3] 2L_6550798_SNP [dm6]	A	C	1.276e^-5	0.762	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	25248525	3R_25248525_SNP [dm3] 3R_29422803_SNP [dm6]	T	G	1.314e^-5	0.762	INTRON Ptp99A
2L	9442551	2L_9442551_SNP [dm3] 2L_9442551_SNP [dm6]	C	T	1.357e^-5	0.762	INTRON numb
2R	12396107	2R_12396107_SNP [dm3] 2R_16508602_SNP [dm6]	G	A	1.386e^-5	0.762	INTRON Sema-2a
X	3898543	X_3898543_SNP [dm3] X_4004510_SNP [dm6]	A	C	1.388e^-5	0.762	INTERGENIC
2L	10703480	2L_10703480_SNP [dm3] 2L_10703480_SNP [dm6]	A	T	1.460e^-5	0.762	UPSTREAM CG6415 INTRON Lip2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20329653	3R_20329653_SNP [dm3] 3R_24503931_SNP [dm6]	C	T	1.494e^-5	0.762	INTERGENIC
X	15509970	X_15509970_SNP [dm3] X_15615937_SNP [dm6]	G	C	1.516e^-5	0.762	INTRON sog
2L	21065702	2L_21065702_SNP [dm3] 2L_21065702_SNP [dm6]	C	A	1.560e^-5	0.762	INTRON CG9265
3L	5329534	3L_5329534_INS [dm3] 3L_5336434_INS [dm6]	A	AA	1.587e^-5	0.762	INTERGENIC
3L	7358964	3L_7358964_SNP [dm3] 3L_7365864_SNP [dm6]	C	A	1.653e^-5	0.762	NON_SYNONYMOUS_CODING Sh3beta DOWNSTREAM Sh3beta INTRON Sh3beta	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7699423	2L_7699423_SNP [dm3] 2L_7699423_SNP [dm6]	G	C	1.654e^-5	0.762	SYNONYMOUS_CODING Tep2	TF binding site mE1_TFBS_sens
3R	4873990	3R_4873990_SNP [dm3] 3R_9048268_SNP [dm6]	G	A	1.685e^-5	0.762	UPSTREAM Rel & 1 other INTRON Nmdmc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12352306	X_12352306_SNP [dm3] X_12458273_SNP [dm6]	G	A	1.723e^-5	0.762	UPSTREAM CG15731 INTERGENIC
2L	6553745	2L_6553745_SNP [dm3] 2L_6553745_SNP [dm6]	T	A	1.762e^-5	0.762	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26357057	3R_26357057_DEL [dm3] 3R_30531335_DEL [dm6]	GA	G	1.775e^-5	0.762	INTRON CR45552 EXON CR45553
2R	7120967	2R_7120967_SNP [dm3] 2R_11233462_SNP [dm6]	T	G	1.841e^-5	0.762	SYNONYMOUS_CODING CG13218 UPSTREAM metro & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	19693808	3R_19693808_SNP [dm3] 3R_23868086_SNP [dm6]	G	A	1.876e^-5	0.762	INTRON Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
X	14292594	X_14292594_INS [dm3] X_14398561_INS [dm6]	T	TT	1.897e^-5	0.762	INTRON dpr8
3R	25243054	3R_25243054_SNP [dm3] 3R_29417332_SNP [dm6]	A	C	1.915e^-5	0.762	INTRON Ptp99A
2L	12280905	2L_12280905_SNP [dm3] 2L_12280905_SNP [dm6]	A	C	1.919e^-5	0.762	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	18616629	X_18616629_SNP [dm3] X_18722596_SNP [dm6]	G	A	1.949e^-5	0.762	INTRON CCKLR-17D1
3R	9533721	3R_9533721_SNP [dm3] 3R_13707999_SNP [dm6]	G	C	1.953e^-5	0.762	SYNONYMOUS_CODING Adgf-C	TF binding site mE1_TFBS_cad
3R	13945090	3R_13945090_SNP [dm3] 3R_18119368_SNP [dm6]	C	T	2.037e^-5	0.762	INTRON sr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	3898509	X_3898509_SNP [dm3] X_4004476_SNP [dm6]	A	C	2.232e^-5	0.762	INTERGENIC
2L	9542422	2L_9542422_SNP [dm3] 2L_9542422_SNP [dm6]	G	T	2.350e^-5	0.762	UTR_3_PRIME CG17855 UPSTREAM Cpr30B
3R	22160768	3R_22160768_SNP [dm3] 3R_26335046_SNP [dm6]	G	A	2.522e^-5	0.762	INTRON CG33970
X	286036	X_286036_SNP [dm3] X_392003_SNP [dm6]	G	A	2.532e^-5	0.762	INTRON CG32816 EXON CR44753	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16255416	2L_16255416_SNP [dm3] 2L_16255416_SNP [dm6]	A	G	2.538e^-5	0.762	INTRON PRL-1	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
X	3898476	X_3898476_SNP [dm3] X_4004443_SNP [dm6]	C	A	2.603e^-5	0.762	INTERGENIC
2L	10845051	2L_10845051_SNP [dm3] 2L_10845051_SNP [dm6]	A	G	2.718e^-5	0.762	UPSTREAM CG17140 DOWNSTREAM Porin2 INTRON CG17139 & 1 other
2R	12442548	2R_12442548_SNP [dm3] 2R_16555043_SNP [dm6]	C	T	2.719e^-5	0.762	SYNONYMOUS_CODING Syn2
2R	7721450	2R_7721450_SNP [dm3] 2R_11833945_SNP [dm6]	A	C	2.788e^-5	0.762	INTRON Sobp
X	12610472	X_12610472_SNP [dm3] X_12716439_SNP [dm6]	C	T	2.837e^-5	0.762	INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3898518	X_3898518_SNP [dm3] X_4004485_SNP [dm6]	T	A	2.867e^-5	0.762	INTERGENIC
X	18620071	X_18620071_SNP [dm3] X_18726038_SNP [dm6]	T	C	3.006e^-5	0.762	SYNONYMOUS_CODING CCKLR-17D1 UPSTREAM CG42302	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	4679846	3R_4679846_SNP [dm3] 3R_8854124_SNP [dm6]	C	A	3.022e^-5	0.762	INTRON pyd	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
3R	4262124	3R_4262124_SNP [dm3] 3R_8436402_SNP [dm6]	T	C	3.042e^-5	0.762	INTRON CG45263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10119255	3R_10119255_SNP [dm3] 3R_14293533_SNP [dm6]	T	A	3.061e^-5	0.762	INTRON CG12207
X	3249015	X_3249015_SNP [dm3] X_3354982_SNP [dm6]	T	C	3.063e^-5	0.762	INTERGENIC
2R	5476344	2R_5476344_SNP [dm3] 2R_9588839_SNP [dm6]	T	A	3.063e^-5	0.762	UPSTREAM CG1827 DOWNSTREAM RpL31 INTRON clos	TF binding site mE1_TFBS_cad
2L	15989792	2L_15989792_SNP [dm3] 2L_15989792_SNP [dm6]	G	T	3.147e^-5	0.762	EXON CR43412	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	260204	X_260204_SNP [dm3] X_366171_SNP [dm6]	A	C	3.196e^-5	0.762	INTRON CG32816 & 1 other EXON yar
2R	18452505	2R_18452505_SNP [dm3] 2R_22565000_SNP [dm6]	G	A	3.251e^-5	0.762	SYNONYMOUS_CODING dnr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	293501	X_293501_SNP [dm3] X_399468_SNP [dm6]	T	C	3.254e^-5	0.762	INTRON CG32816	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13309065	3L_13309065_SNP [dm3] 3L_13315965_SNP [dm6]	C	T	3.272e^-5	0.762	INTERGENIC
2R	6875086	2R_6875086_SNP [dm3] 2R_10987581_SNP [dm6]	G	C	3.282e^-5	0.762	INTRON luna
2L	10090369	2L_10090369_DEL [dm3] 2L_10090369_DEL [dm6]	TT	T	3.311e^-5	0.762	DOWNSTREAM CG13133 INTRON CG44153
2L	6650004	2L_6650004_SNP [dm3] 2L_6650004_SNP [dm6]	G	A	3.319e^-5	0.762	SYNONYMOUS_CODING Tango1 UPSTREAM CG31635	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3R	22160753	3R_22160753_SNP [dm3] 3R_26335031_SNP [dm6]	C	T	3.353e^-5	0.762	INTRON CG33970
X	12610642	X_12610642_SNP [dm3] X_12716609_SNP [dm6]	A	T	3.373e^-5	0.762	INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5329546	3L_5329546_SNP [dm3] 3L_5336446_SNP [dm6]	A	T	3.421e^-5	0.762	INTERGENIC
X	17730093	X_17730093_SNP [dm3] X_17836060_SNP [dm6]	T	A	3.508e^-5	0.762	INTRON CG6398
3L	9160188	3L_9160188_SNP [dm3] 3L_9167088_SNP [dm6]	T	C	3.522e^-5	0.762	INTRON Rdl
X	2885827	X_2885827_INS [dm3] X_2991794_INS [dm6]	A	AA	3.576e^-5	0.762	INTRON kirre
X	264409	X_264409_SNP [dm3] X_370376_SNP [dm6]	C	T	3.649e^-5	0.762	NON_SYNONYMOUS_CODING ac INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4747763	2L_4747763_SNP [dm3] 2L_4747763_SNP [dm6]	A	G	3.650e^-5	0.762	INTRON CG15630
X	18620068	X_18620068_SNP [dm3] X_18726035_SNP [dm6]	A	G	3.763e^-5	0.762	SYNONYMOUS_CODING CCKLR-17D1 UPSTREAM CG42302	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	2403238	2R_2403238_SNP [dm3] 2R_6515733_SNP [dm6]	C	T	3.790e^-5	0.762	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	22160664	3R_22160664_SNP [dm3] 3R_26334942_SNP [dm6]	G	T	3.809e^-5	0.762	INTRON CG33970
3R	22160802	3R_22160802_SNP [dm3] 3R_26335080_SNP [dm6]	A	T	3.897e^-5	0.762	INTRON CG33970
3R	22160583	3R_22160583_SNP [dm3] 3R_26334861_SNP [dm6]	A	T	3.947e^-5	0.762	INTRON CG33970
3R	4679834	3R_4679834_SNP [dm3] 3R_8854112_SNP [dm6]	T	A	3.968e^-5	0.762	INTRON pyd	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
2L	10377097	2L_10377097_SNP [dm3] 2L_10377097_SNP [dm6]	A	G	4.036e^-5	0.762	INTRON dpr19	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	275273	X_275273_SNP [dm3] X_381240_SNP [dm6]	C	T	4.036e^-5	0.762	INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14661371	X_14661371_SNP [dm3] X_14767338_SNP [dm6]	G	T	4.057e^-5	0.762	INTERGENIC
X	3898530	X_3898530_SNP [dm3] X_4004497_SNP [dm6]	A	G	4.111e^-5	0.762	INTERGENIC
X	22184258	X_22184258_SNP [dm3] X_22782422_SNP [dm6]	C	T	4.173e^-5	0.762	INTRON CR44997
2L	9922005	2L_9922005_SNP [dm3] 2L_9922005_SNP [dm6]	C	G	4.188e^-5	0.762	DOWNSTREAM CG4594 & 1 other INTRON CG4592	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	9588472	3R_9588472_SNP [dm3] 3R_13762750_SNP [dm6]	C	T	4.351e^-5	0.762	SYNONYMOUS_CODING CG34383 UTR_3_PRIME CG34383 DOWNSTREAM CG34383
3L	13309025	3L_13309025_SNP [dm3] 3L_13315925_SNP [dm6]	A	G	4.355e^-5	0.762	INTERGENIC
2L	13344168	2L_13344168_SNP [dm3] 2L_13344168_SNP [dm6]	T	C	4.435e^-5	0.762	INTERGENIC
2L	9542533	2L_9542533_SNP [dm3] 2L_9542533_SNP [dm6]	G	A	4.472e^-5	0.762	UPSTREAM Cpr30B DOWNSTREAM CG17855 INTERGENIC
X	16299961	X_16299961_SNP [dm3] X_16405928_SNP [dm6]	C	T	4.528e^-5	0.762	UPSTREAM CG9981 & 1 other INTRON CG4301
2L	6630538	2L_6630538_SNP [dm3] 2L_6630538_SNP [dm6]	G	C	4.621e^-5	0.762	INTRON Oatp26F
3R	10399757	3R_10399757_SNP [dm3] 3R_14574035_SNP [dm6]	C	T	4.634e^-5	0.762	SYNONYMOUS_CODING CG7987	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
X	280398	X_280398_SNP [dm3] X_386365_SNP [dm6]	T	G	4.705e^-5	0.762	DOWNSTREAM CR44752 INTRON CG32816
2R	11867112	2R_11867112_SNP [dm3] 2R_15979607_SNP [dm6]	C	T	4.728e^-5	0.762	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22160770	3R_22160770_SNP [dm3] 3R_26335048_SNP [dm6]	G	A	4.741e^-5	0.762	INTRON CG33970
3R	4878199	3R_4878199_SNP [dm3] 3R_9052477_SNP [dm6]	T	A	4.753e^-5	0.762	UPSTREAM Kdm2 DOWNSTREAM Mst85C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	10119233	3R_10119233_SNP [dm3] 3R_14293511_SNP [dm6]	C	T	4.755e^-5	0.762	INTRON CG12207
3R	24540380	3R_24540380_SNP [dm3] 3R_28714658_SNP [dm6]	T	C	4.764e^-5	0.762	INTRON htt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	13952962	2R_13952962_SNP [dm3] 2R_18065457_SNP [dm6]	T	A	4.796e^-5	0.762	INTRON CG34386
2R	1933755	2R_1933755_SNP [dm3] 2R_6046250_SNP [dm6]	A	T	4.856e^-5	0.762	UPSTREAM CG34211 DOWNSTREAM CR44130 INTERGENIC
2R	1933756	2R_1933756_SNP [dm3] 2R_6046251_SNP [dm6]	T	G	4.856e^-5	0.762	UPSTREAM CG34211 DOWNSTREAM CR44130 INTERGENIC
2R	12572498	2R_12572498_SNP [dm3] 2R_16684993_SNP [dm6]	T	G	4.948e^-5	0.762	UPSTREAM CG30463 INTRON CG30463
2L	7602136	2L_7602136_SNP [dm3] 2L_7602136_SNP [dm6]	T	A	4.983e^-5	0.762	INTERGENIC
3R	22160652	3R_22160652_SNP [dm3] 3R_26334930_SNP [dm6]	A	T	4.989e^-5	0.762	INTRON CG33970
3L	15352550	3L_15352550_SNP [dm3] 3L_15359450_SNP [dm6]	G	T	4.990e^-5	0.762	INTERGENIC
3L	14677420	3L_14677420_DEL [dm3] 3L_14684320_DEL [dm6]	AGCACAGA	A	5.017e^-5	0.762	UPSTREAM CG5048 INTRON ome
X	6723290	X_6723290_SNP [dm3] X_6829257_SNP [dm6]	A	G	5.042e^-5	0.762	SYNONYMOUS_CODING nonC	TF binding site mE1_TFBS_chinmo
3R	24461437	3R_24461437_SNP [dm3] 3R_28635715_SNP [dm6]	A	G	5.101e^-5	0.762	UPSTREAM CG10011 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2R	18231491	2R_18231491_DEL [dm3] 2R_22343986_DEL [dm6]	AA	A	5.102e^-5	0.762	INTRON Liprin-gamma
X	3898517	X_3898517_SNP [dm3] X_4004484_SNP [dm6]	T	G	5.106e^-5	0.762	INTERGENIC
2R	15272385	2R_15272385_SNP [dm3] 2R_19384880_SNP [dm6]	T	G	5.169e^-5	0.762	SYNONYMOUS_CODING CG10073
2L	7241334	2L_7241334_SNP [dm3] 2L_7241334_SNP [dm6]	A	G	5.319e^-5	0.762	UPSTREAM Ndae1 INTRON Ndae1
3L	12552379	3L_12552379_SNP [dm3] 3L_12559279_SNP [dm6]	C	T	5.329e^-5	0.762	INTRON sowah
X	3770095	X_3770095_SNP [dm3] X_3876062_SNP [dm6]	T	A	5.401e^-5	0.762	SYNONYMOUS_CODING CG2930
2R	9309812	2R_9309812_SNP [dm3] 2R_13422307_SNP [dm6]	T	C	5.431e^-5	0.762	DOWNSTREAM CG30060 INTRON CG42321
X	3898662	X_3898662_SNP [dm3] X_4004629_SNP [dm6]	G	A	5.477e^-5	0.762	INTERGENIC
X	276268	X_276268_SNP [dm3] X_382235_SNP [dm6]	A	G	5.568e^-5	0.762	INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13035596	X_13035596_SNP [dm3] X_13141563_SNP [dm6]	C	T	5.576e^-5	0.762	INTRON CG32645
X	18893116	X_18893116_SNP [dm3] X_18999083_SNP [dm6]	T	C	5.605e^-5	0.762	INTRON CG43759
3R	4677440	3R_4677440_SNP [dm3] 3R_8851718_SNP [dm6]	C	A	5.618e^-5	0.762	INTRON pyd
3R	22160752	3R_22160752_SNP [dm3] 3R_26335030_SNP [dm6]	C	T	5.645e^-5	0.762	INTRON CG33970
3R	18594047	3R_18594047_SNP [dm3] 3R_22768325_SNP [dm6]	G	A	5.725e^-5	0.762	NON_SYNONYMOUS_CODING CG43091 UPSTREAM CG13841 DOWNSTREAM CG43092 INTRON Usp12-46 & 1 other
2L	6550775	2L_6550775_SNP [dm3] 2L_6550775_SNP [dm6]	A	G	5.746e^-5	0.762	INTERGENIC	TF binding site mE1_TFBS_HSA
X	3248899	X_3248899_SNP [dm3] X_3354866_SNP [dm6]	C	G	5.771e^-5	0.762	INTERGENIC
X	12332607	X_12332607_SNP [dm3] X_12438574_SNP [dm6]	C	T	5.781e^-5	0.762	INTRON Pkcdelta
2R	7921226	2R_7921226_DEL [dm3] 2R_12033721_DEL [dm6]	AA	A	5.781e^-5	0.762	UTR_3_PRIME pds5 UPSTREAM CG8321	TF binding site BDTNP1_TFBS_dl
3R	26808987	3R_26808987_INS [dm3] 3R_30983265_INS [dm6]	A	ACACGCTCAAAAGTTCAAGC...	5.801e^-5	0.762	INTRON 5-HT7	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	14661376	X_14661376_SNP [dm3] X_14767343_SNP [dm6]	C	T	5.868e^-5	0.762	INTERGENIC
2L	15967108	2L_15967108_SNP [dm3] 2L_15967108_SNP [dm6]	A	G	5.900e^-5	0.762	INTERGENIC
2R	5481199	2R_5481199_SNP [dm3] 2R_9593694_SNP [dm6]	C	G	5.906e^-5	0.762	NON_SYNONYMOUS_CODING clos UPSTREAM CG1902 & 1 other DOWNSTREAM Map60	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	3719155	2L_3719155_SNP [dm3] 2L_3719155_SNP [dm6]	G	A	5.995e^-5	0.762	INTRON Shaw
3L	8150418	3L_8150418_SNP [dm3] 3L_8157318_SNP [dm6]	T	G	6.015e^-5	0.762	INTRON CG42445
2L	6175505	2L_6175505_INS [dm3] 2L_6175505_INS [dm6]	GA	TCG	6.046e^-5	0.762	INTERGENIC
2L	7108648	2L_7108648_SNP [dm3] 2L_7108648_SNP [dm6]	T	G	6.050e^-5	0.762	INTRON Pvf3
X	248402	X_248402_SNP [dm3] X_354369_SNP [dm6]	T	G	6.101e^-5	0.762	INTRON CG32816	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_cad
X	1358858	X_1358858_SNP [dm3] X_1464825_SNP [dm6]	T	C	6.123e^-5	0.762	SYNONYMOUS_CODING O-fut2 UPSTREAM Ns3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3248999	X_3248999_DEL [dm3] X_3354966_DEL [dm6]	TT	T	6.155e^-5	0.762	INTERGENIC
2R	10527786	2R_10527786_SNP [dm3] 2R_14640281_SNP [dm6]	A	C	6.168e^-5	0.762	NON_SYNONYMOUS_CODING CG12862 DOWNSTREAM CG42715	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8925219	X_8925219_DEL [dm3] X_9031186_DEL [dm6]	TT	C	6.246e^-5	0.762	INTRON CR43836 & 1 other
2L	10896688	2L_10896688_SNP [dm3] 2L_10896688_SNP [dm6]	G	T	6.367e^-5	0.762	INTERGENIC
3L	13280546	3L_13280546_DEL [dm3] 3L_13287446_DEL [dm6]	TCCT	T	6.425e^-5	0.762	UPSTREAM CR45753 INTERGENIC
2L	8340545	2L_8340545_SNP [dm3] 2L_8340545_SNP [dm6]	A	G	6.431e^-5	0.762	INTRON CG14274
X	15862345	X_15862345_SNP [dm3] X_15968312_SNP [dm6]	G	A	6.466e^-5	0.762	INTRON mmd
X	16735488	X_16735488_DEL [dm3] X_16841455_DEL [dm6]	AATAATCAAAGCGCATTTAA...	G	6.507e^-5	0.762	INTRON RSG7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7602141	2L_7602141_SNP [dm3] 2L_7602141_SNP [dm6]	T	C	6.562e^-5	0.762	INTERGENIC
X	2885777	X_2885777_SNP [dm3] X_2991744_SNP [dm6]	C	T	6.594e^-5	0.762	INTRON kirre
X	16525779	X_16525779_SNP [dm3] X_16631746_SNP [dm6]	A	G	6.642e^-5	0.762	UPSTREAM CR45001 INTRON Rok & 1 other	TF binding site mE1_TFBS_inv
2L	17352208	2L_17352208_SNP [dm3] 2L_17352208_SNP [dm6]	C	T	6.659e^-5	0.762	INTERGENIC
X	3999706	X_3999706_SNP [dm3] X_4105673_SNP [dm6]	G	T	6.681e^-5	0.762	UTR_3_PRIME brn UPSTREAM cib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2R	13952745	2R_13952745_SNP [dm3] 2R_18065240_SNP [dm6]	A	G	6.682e^-5	0.762	INTRON CG34386
X	12331979	X_12331979_SNP [dm3] X_12437946_SNP [dm6]	A	T	6.689e^-5	0.762	INTRON Pkcdelta
X	15385824	X_15385824_SNP [dm3] X_15491791_SNP [dm6]	A	G	6.704e^-5	0.762	INTRON Gmap	TF binding site BDTNP1_TFBS_dl
2L	10703479	2L_10703479_SNP [dm3] 2L_10703479_SNP [dm6]	C	A	6.704e^-5	0.762	UPSTREAM CG6415 INTRON Lip2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13910697	2L_13910697_SNP [dm3] 2L_13910697_SNP [dm6]	A	G	6.709e^-5	0.762	INTRON Ance-2	TF binding site mE1_TFBS_cad
3L	3181781	3L_3181781_SNP [dm3] 3L_3181781_SNP [dm6]	C	T	6.734e^-5	0.762	NON_SYNONYMOUS_CODING Girdin
2R	15068644	2R_15068644_SNP [dm3] 2R_19181139_SNP [dm6]	T	C	6.775e^-5	0.762	INTRON hppy
2R	12585711	2R_12585711_SNP [dm3] 2R_16698206_SNP [dm6]	A	T	6.787e^-5	0.762	INTRON CG30463
X	15509930	X_15509930_DEL [dm3] X_15615897_DEL [dm6]	TTAATTGGCTGCGTGCGAGC...	C	6.881e^-5	0.762	INTRON sog
X	15862356	X_15862356_SNP [dm3] X_15968323_SNP [dm6]	A	T	6.928e^-5	0.762	INTRON mmd
2L	9507907	2L_9507907_SNP [dm3] 2L_9507907_SNP [dm6]	A	C	6.978e^-5	0.762	INTRON CG33298
2L	6171283	2L_6171283_SNP [dm3] 2L_6171283_SNP [dm6]	A	G	6.985e^-5	0.762	INTERGENIC
2R	12442544	2R_12442544_SNP [dm3] 2R_16555039_SNP [dm6]	T	C	7.003e^-5	0.762	SYNONYMOUS_CODING Syn2
X	15669374	X_15669374_SNP [dm3] X_15775341_SNP [dm6]	T	G	7.178e^-5	0.762	NON_SYNONYMOUS_CODING CG43672
2L	19467906	2L_19467906_SNP [dm3] 2L_19467906_SNP [dm6]	C	T	7.374e^-5	0.762	DOWNSTREAM tj INTERGENIC
X	242138	X_242138_SNP [dm3] X_348105_SNP [dm6]	A	T	7.469e^-5	0.762	SYNONYMOUS_CODING CG3777 INTRON CG32816
3L	11297757	3L_11297757_SNP [dm3] 3L_11304657_SNP [dm6]	C	A	7.483e^-5	0.762	INTERGENIC
X	15509967	X_15509967_DEL [dm3] X_15615934_DEL [dm6]	AA	A	7.520e^-5	0.762	INTRON sog
2R	3686139	2R_3686139_SNP [dm3] 2R_7798634_SNP [dm6]	C	T	7.534e^-5	0.762	SYNONYMOUS_CODING mus205	TF binding site mE1_TFBS_cad
X	19777754	X_19777754_DEL [dm3] X_19883721_DEL [dm6]	TT	T	7.550e^-5	0.762	INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	954269	3L_954269_SNP [dm3] 3L_954269_SNP [dm6]	C	T	7.555e^-5	0.762	INTRON Glut1
3R	22160824	3R_22160824_SNP [dm3] 3R_26335102_SNP [dm6]	A	G	7.575e^-5	0.762	INTRON CG33970
2R	12585785	2R_12585785_SNP [dm3] 2R_16698280_SNP [dm6]	T	G	7.713e^-5	0.762	INTRON CG30463
3R	22160698	3R_22160698_SNP [dm3] 3R_26334976_SNP [dm6]	A	T	7.781e^-5	0.762	INTRON CG33970
3R	4251921	3R_4251921_SNP [dm3] 3R_8426199_SNP [dm6]	T	A	7.810e^-5	0.762	INTRON CG45263
3R	17389817	3R_17389817_SNP [dm3] 3R_21564095_SNP [dm6]	A	T	7.813e^-5	0.762	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13012715	3L_13012715_DEL [dm3] 3L_13019615_DEL [dm6]	CC	C	7.854e^-5	0.762	UTR_3_PRIME ste14 UPSTREAM CR45445 DOWNSTREAM AdenoK & 1 other
X	19725775	X_19725775_SNP [dm3] X_19831742_SNP [dm6]	A	G	7.905e^-5	0.762	UTR_3_PRIME pico	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6629201	2L_6629201_SNP [dm3] 2L_6629201_SNP [dm6]	C	G	7.916e^-5	0.762	INTRON Oatp26F	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_cad
X	5509440	X_5509440_MNP [dm3] X_5615407_MNP [dm6]	TTCC	CAGT	7.920e^-5	0.762	NON_SYNONYMOUS_CODING CG34434 UPSTREAM CG34435
2L	7804295	2L_7804295_SNP [dm3] 2L_7804295_SNP [dm6]	A	G	7.934e^-5	0.762	UTR_3_PRIME cdc14 INTRON cdc14
X	15454282	X_15454282_INS [dm3] X_15560249_INS [dm6]	C	CC	7.951e^-5	0.762	INTERGENIC
3R	22160786	3R_22160786_SNP [dm3] 3R_26335064_SNP [dm6]	A	G	7.991e^-5	0.762	INTRON CG33970
2R	7917464	2R_7917464_SNP [dm3] 2R_12029959_SNP [dm6]	C	T	7.997e^-5	0.762	SYNONYMOUS_CODING pds5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3898641	X_3898641_SNP [dm3] X_4004608_SNP [dm6]	C	A	8.030e^-5	0.762	INTERGENIC
2R	13410342	2R_13410342_SNP [dm3] 2R_17522837_SNP [dm6]	G	T	8.079e^-5	0.762	INTRON Patronin
X	2892957	X_2892957_SNP [dm3] X_2998924_SNP [dm6]	G	T	8.163e^-5	0.762	INTRON kirre
3R	15100098	3R_15100098_SNP [dm3] 3R_19274376_SNP [dm6]	A	C	8.164e^-5	0.762	INTERGENIC
X	5509404	X_5509404_SNP [dm3] X_5615371_SNP [dm6]	C	A	8.264e^-5	0.762	NON_SYNONYMOUS_CODING CG34434 UPSTREAM CG34435
X	15451729	X_15451729_SNP [dm3] X_15557696_SNP [dm6]	A	C	8.310e^-5	0.762	INTERGENIC
3L	11284546	3L_11284546_SNP [dm3] 3L_11291446_SNP [dm6]	T	C	8.313e^-5	0.762	INTRON CG6175
X	20899330	X_20899330_SNP [dm3] X_21028303_SNP [dm6]	C	T	8.315e^-5	0.762	UTR_5_PRIME CG1532 DOWNSTREAM CG1529	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA
X	2600737	X_2600737_SNP [dm3] X_2706704_SNP [dm6]	C	T	8.354e^-5	0.762	SYNONYMOUS_CODING CG2680 DOWNSTREAM eIF2B-beta	TF binding site mE1_TFBS_cad
X	18893227	X_18893227_SNP [dm3] X_18999194_SNP [dm6]	G	T	8.355e^-5	0.762	INTRON CG43759
2L	3960166	2L_3960166_SNP [dm3] 2L_3960166_SNP [dm6]	T	A	8.359e^-5	0.762	INTRON fred
2R	19174345	2R_19174345_SNP [dm3] 2R_23286822_SNP [dm6]	C	G	8.372e^-5	0.762	INTERGENIC
3R	20462708	3R_20462708_SNP [dm3] 3R_24636986_SNP [dm6]	T	C	8.393e^-5	0.762	SYNONYMOUS_CODING puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9655403	2L_9655403_SNP [dm3] 2L_9655403_SNP [dm6]	T	C	8.446e^-5	0.762	SYNONYMOUS_CODING Apoltp
3L	9385012	3L_9385012_SNP [dm3] 3L_9391912_SNP [dm6]	A	C	8.470e^-5	0.762	INTRON CG4080	TF binding site BDTNP1_TFBS_dl
3R	25806545	3R_25806545_SNP [dm3] 3R_29980823_SNP [dm6]	A	G	8.473e^-5	0.762	INTERGENIC
X	12352194	X_12352194_SNP [dm3] X_12458161_SNP [dm6]	G	A	8.484e^-5	0.762	UPSTREAM CG15731 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6711851	2L_6711851_SNP [dm3] 2L_6711851_SNP [dm6]	T	C	8.508e^-5	0.762	UTR_3_PRIME AkhR INTRON AkhR
3R	22160782	3R_22160782_SNP [dm3] 3R_26335060_SNP [dm6]	T	A	8.561e^-5	0.762	INTRON CG33970
X	19730482	X_19730482_SNP [dm3] X_19836449_SNP [dm6]	C	T	8.633e^-5	0.762	SYNONYMOUS_CODING pico	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	251323	X_251323_SNP [dm3] X_357290_SNP [dm6]	T	C	8.645e^-5	0.762	INTRON CG32816 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	7605820	3R_7605820_SNP [dm3] 3R_11780098_SNP [dm6]	G	A	8.657e^-5	0.762	UPSTREAM l_3_neo38 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	5881887	3L_5881887_SNP [dm3] 3L_5888787_SNP [dm6]	A	G	8.668e^-5	0.762	INTERGENIC
X	6723503	X_6723503_SNP [dm3] X_6829470_SNP [dm6]	C	A	8.704e^-5	0.762	SYNONYMOUS_CODING nonC	TF binding site mE1_TFBS_chinmo
2R	9964696	2R_9964696_DEL [dm3] 2R_14077191_DEL [dm6]	GAGGGG	G	8.705e^-5	0.762	INTRON Prosap
2R	14575160	2R_14575160_SNP [dm3] 2R_18687655_SNP [dm6]	C	T	8.763e^-5	0.762	SYNONYMOUS_CODING CG42855 UPSTREAM CG44433 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	13945034	3R_13945034_SNP [dm3] 3R_18119312_SNP [dm6]	T	G	8.807e^-5	0.762	INTRON sr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	286373	X_286373_SNP [dm3] X_392340_SNP [dm6]	C	A	8.817e^-5	0.762	INTRON CG32816 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11174678	3L_11174678_SNP [dm3] 3L_11181578_SNP [dm6]	G	A	8.932e^-5	0.769	INTRON GlcAT-P
X	18619376	X_18619376_SNP [dm3] X_18725343_SNP [dm6]	G	T	9.037e^-5	0.774	SYNONYMOUS_CODING CG42302 INTRON CCKLR-17D1
X	4575206	X_4575206_SNP [dm3] X_4681173_SNP [dm6]	G	A	9.113e^-5	0.777	NON_SYNONYMOUS_CODING Pp2C1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15385770	X_15385770_SNP [dm3] X_15491737_SNP [dm6]	A	T	9.295e^-5	0.785	INTRON Gmap	TF binding site BDTNP1_TFBS_dl
X	14661374	X_14661374_SNP [dm3] X_14767341_SNP [dm6]	T	A	9.424e^-5	0.785	INTERGENIC
3R	4339780	3R_4339780_SNP [dm3] 3R_8514058_SNP [dm6]	G	A	9.501e^-5	0.785	INTERGENIC
X	282271	X_282271_SNP [dm3] X_388238_SNP [dm6]	G	C	9.503e^-5	0.785	INTRON CG32816	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	269381	X_269381_SNP [dm3] X_375348_SNP [dm6]	G	A	9.529e^-5	0.785	INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9543714	2L_9543714_SNP [dm3] 2L_9543714_SNP [dm6]	T	C	9.584e^-5	0.785	UPSTREAM CG13113 DOWNSTREAM Cpr30B INTERGENIC
3R	24922480	3R_24922480_SNP [dm3] 3R_29096758_SNP [dm6]	G	A	9.625e^-5	0.785	DOWNSTREAM CR45030 INTRON CG11873
3R	24923593	3R_24923593_SNP [dm3] 3R_29097871_SNP [dm6]	C	A	9.625e^-5	0.785	INTRON CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19817489	2L_19817489_SNP [dm3] 2L_19817489_SNP [dm6]	G	A	9.629e^-5	0.785	DOWNSTREAM snRNA:U5:38ABb INTRON sick	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	13247839	3L_13247839_SNP [dm3] 3L_13254739_SNP [dm6]	G	C	9.684e^-5	0.785	INTRON caps
X	2528712	X_2528712_SNP [dm3] X_2634679_SNP [dm6]	C	T	9.723e^-5	0.785	INTRON sgg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2L	12280729	2L_12280729_SNP [dm3] 2L_12280729_SNP [dm6]	G	A	9.751e^-5	0.785	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3204455	3L_3204455_SNP [dm3] 3L_3204455_SNP [dm6]	T	A	9.824e^-5	0.785	UPSTREAM CG33159 DOWNSTREAM CG32277 INTRON gry	TF binding site mE1_TFBS_cad
X	8073157	X_8073157_SNP [dm3] X_8179124_SNP [dm6]	C	A	9.827e^-5	0.785	UTR_5_PRIME sdt INTRON sdt	TF binding site BDTNP1_TFBS_dl
2L	5903860	2L_5903860_SNP [dm3] 2L_5903860_SNP [dm6]	G	C	9.877e^-5	0.785	SYNONYMOUS_CODING CG9021	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2453004	2R_2453004_SNP [dm3] 2R_6565499_SNP [dm6]	C	G	9.909e^-5	0.785	INTRON jing
X	3487824	X_3487824_SNP [dm3] X_3593791_SNP [dm6]	C	A	9.919e^-5	0.785	INTRON AstA-R1
X	14494961	X_14494961_SNP [dm3] X_14600928_SNP [dm6]	G	A	1.002e^-4	0.785	INTRON CG9413
X	15385688	X_15385688_SNP [dm3] X_15491655_SNP [dm6]	A	T	1.005e^-4	0.785	INTRON Gmap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14011179	2L_14011179_SNP [dm3] 2L_14011179_SNP [dm6]	T	C	1.007e^-4	0.785	UPSTREAM tRNA:Q:34E INTERGENIC
2R	5486581	2R_5486581_SNP [dm3] 2R_9599076_SNP [dm6]	C	A	1.015e^-4	0.785	NON_SYNONYMOUS_CODING CG30338 DOWNSTREAM CG30340 INTRON CG1902 & 1 other	TF binding site mE1_TFBS_chinmo
X	20693762	X_20693762_SNP [dm3] X_20822735_SNP [dm6]	A	C	1.016e^-4	0.785	INTRON shakB & 1 other
X	335317	X_335317_SNP [dm3] X_441284_SNP [dm6]	G	A	1.023e^-4	0.785	INTRON CG32816	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	273699	X_273699_SNP [dm3] X_379666_SNP [dm6]	T	A	1.027e^-4	0.785	INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	12721118	X_12721118_SNP [dm3] X_12827085_SNP [dm6]	T	C	1.027e^-4	0.785	INTRON Pde9
3R	24540387	3R_24540387_SNP [dm3] 3R_28714665_SNP [dm6]	C	T	1.033e^-4	0.785	SPLICE_SITE_REGION htt INTRON htt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	9384663	3L_9384663_SNP [dm3] 3L_9391563_SNP [dm6]	C	T	1.034e^-4	0.785	INTRON CG4080	TF binding site BDTNP1_TFBS_dl
2L	5875053	2L_5875053_SNP [dm3] 2L_5875053_SNP [dm6]	A	G	1.038e^-4	0.785	INTRON rau
2L	10910613	2L_10910613_SNP [dm3] 2L_10910613_SNP [dm6]	C	T	1.049e^-4	0.787	UTR_5_PRIME CG14069 UPSTREAM CG14069
2R	14189251	2R_14189251_SNP [dm3] 2R_18301746_SNP [dm6]	A	T	1.053e^-4	0.787	INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	10837533	3R_10837533_SNP [dm3] 3R_15011811_SNP [dm6]	C	G	1.070e^-4	0.787	INTERGENIC
3L	972064	3L_972064_SNP [dm3] 3L_972064_SNP [dm6]	A	G	1.072e^-4	0.787	INTRON Glut1
X	3898617	X_3898617_SNP [dm3] X_4004584_SNP [dm6]	A	T	1.080e^-4	0.787	INTERGENIC
3L	18221526	3L_18221526_SNP [dm3] 3L_18228426_SNP [dm6]	T	C	1.082e^-4	0.787	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	3970541	3R_3970541_SNP [dm3] 3R_8144819_SNP [dm6]	C	A	1.084e^-4	0.787	INTERGENIC
2L	10452646	2L_10452646_SNP [dm3] 2L_10452646_SNP [dm6]	A	T	1.098e^-4	0.787	UPSTREAM ppk10 DOWNSTREAM CG5322 INTERGENIC
2R	14567607	2R_14567607_SNP [dm3] 2R_18680102_SNP [dm6]	C	T	1.098e^-4	0.787	INTRON CG44434 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3L	16551859	3L_16551859_SNP [dm3] 3L_16558759_SNP [dm6]	C	T	1.098e^-4	0.787	DOWNSTREAM CG4229 INTERGENIC
2L	9543370	2L_9543370_SNP [dm3] 2L_9543370_SNP [dm6]	G	T	1.099e^-4	0.787	SYNONYMOUS_CODING Cpr30B UPSTREAM CG13113 DOWNSTREAM CG17855
X	18893155	X_18893155_SNP [dm3] X_18999122_SNP [dm6]	T	C	1.100e^-4	0.787	INTRON CG43759
3R	4263230	3R_4263230_SNP [dm3] 3R_8437508_SNP [dm6]	C	T	1.102e^-4	0.787	INTRON CG45263
3R	10159698	3R_10159698_SNP [dm3] 3R_14333976_SNP [dm6]	G	A	1.105e^-4	0.787	INTRON NK7.1
2R	11530225	2R_11530225_SNP [dm3] 2R_15642720_SNP [dm6]	C	T	1.107e^-4	0.787	INTRON CG42524
3L	3204122	3L_3204122_SNP [dm3] 3L_3204122_SNP [dm6]	G	A	1.109e^-4	0.787	SYNONYMOUS_CODING CG33159 UPSTREAM CG32271 DOWNSTREAM CG32277 INTRON gry	TF binding site mE1_TFBS_cad
3R	10119268	3R_10119268_SNP [dm3] 3R_14293546_SNP [dm6]	G	C	1.112e^-4	0.787	INTRON CG12207
X	15385751	X_15385751_SNP [dm3] X_15491718_SNP [dm6]	T	A	1.130e^-4	0.79	INTRON Gmap	TF binding site BDTNP1_TFBS_dl
2L	11881357	2L_11881357_SNP [dm3] 2L_11881357_SNP [dm6]	C	T	1.133e^-4	0.79	INTRON Pde1c	TF binding site mE1_TFBS_inv
2R	14567611	2R_14567611_SNP [dm3] 2R_18680106_SNP [dm6]	A	T	1.136e^-4	0.79	INTRON CG44434 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3L	14095896	3L_14095896_SNP [dm3] 3L_14102796_SNP [dm6]	T	A	1.151e^-4	0.79	DOWNSTREAM Sox21a INTERGENIC
X	14941805	X_14941805_SNP [dm3] X_15047772_SNP [dm6]	T	C	1.154e^-4	0.79	INTRON hiw & 1 other
3R	22160766	3R_22160766_INS [dm3] 3R_26335044_INS [dm6]	T	TTT	1.164e^-4	0.79	INTRON CG33970
X	12332603	X_12332603_SNP [dm3] X_12438570_SNP [dm6]	G	A	1.170e^-4	0.79	INTRON Pkcdelta
3L	18394543	3L_18394543_SNP [dm3] 3L_18401443_SNP [dm6]	G	T	1.182e^-4	0.79	INTERGENIC	regulatory region REDfly_CRMs
X	18291043	X_18291043_SNP [dm3] X_18397010_SNP [dm6]	C	A	1.183e^-4	0.79	INTRON CG32549	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14095870	3L_14095870_SNP [dm3] 3L_14102770_SNP [dm6]	A	T	1.189e^-4	0.79	DOWNSTREAM Sox21a INTERGENIC
3L	8150415	3L_8150415_DEL [dm3] 3L_8157315_DEL [dm6]	TT	A	1.203e^-4	0.79	INTRON CG42445
2R	14189315	2R_14189315_SNP [dm3] 2R_18301810_SNP [dm6]	A	C	1.204e^-4	0.79	INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	253031	X_253031_SNP [dm3] X_358998_SNP [dm6]	T	A	1.207e^-4	0.79	INTRON CG32816 & 1 other	regulatory region REDfly_CRMs
2L	10703483	2L_10703483_INS [dm3] 2L_10703483_INS [dm6]	C	CC	1.208e^-4	0.79	UPSTREAM CG6415 INTRON Lip2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15811910	3R_15811910_SNP [dm3] 3R_19986188_SNP [dm6]	A	T	1.211e^-4	0.79	INTRON Hs6st
2R	4589494	2R_4589494_SNP [dm3] 2R_8701989_SNP [dm6]	C	T	1.214e^-4	0.79	SYNONYMOUS_CODING CG12376 UPSTREAM CG12376 & 1 other
3R	22160645	3R_22160645_SNP [dm3] 3R_26334923_SNP [dm6]	T	A	1.214e^-4	0.79	INTRON CG33970
2L	9566608	2L_9566608_SNP [dm3] 2L_9566608_SNP [dm6]	G	A	1.216e^-4	0.79	UTR_5_PRIME jp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9749759	3L_9749759_SNP [dm3] 3L_9756659_SNP [dm6]	G	T	1.217e^-4	0.79	INTRON CG42268
3L	757103	3L_757103_SNP [dm3] 3L_757103_SNP [dm6]	A	G	1.218e^-4	0.79	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10599352	3L_10599352_SNP [dm3] 3L_10606252_SNP [dm6]	T	C	1.222e^-4	0.79	INTERGENIC
X	2887596	X_2887596_SNP [dm3] X_2993563_SNP [dm6]	T	A	1.222e^-4	0.79	INTRON kirre
3L	5317952	3L_5317952_SNP [dm3] 3L_5324852_SNP [dm6]	A	C	1.229e^-4	0.79	INTERGENIC
3L	13311759	3L_13311759_SNP [dm3] 3L_13318659_SNP [dm6]	G	C	1.232e^-4	0.79	INTERGENIC
X	3898612	X_3898612_SNP [dm3] X_4004579_SNP [dm6]	A	T	1.235e^-4	0.79	INTERGENIC
X	15669425	X_15669425_SNP [dm3] X_15775392_SNP [dm6]	G	A	1.235e^-4	0.79	SYNONYMOUS_CODING CG43672
3R	20462426	3R_20462426_SNP [dm3] 3R_24636704_SNP [dm6]	A	G	1.238e^-4	0.79	SYNONYMOUS_CODING puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12280384	2L_12280384_INS [dm3] 2L_12280384_INS [dm6]	T	TT	1.241e^-4	0.79	INTRON aret
3R	21913317	3R_21913317_SNP [dm3] 3R_26087595_SNP [dm6]	A	G	1.241e^-4	0.79	INTRON dys
2R	11867712	2R_11867712_SNP [dm3] 2R_15980207_SNP [dm6]	T	G	1.242e^-4	0.79	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26812013	3R_26812013_SNP [dm3] 3R_30986291_SNP [dm6]	T	A	1.247e^-4	0.79	INTRON 5-HT7
X	18291046	X_18291046_SNP [dm3] X_18397013_SNP [dm6]	A	T	1.271e^-4	0.793	INTRON CG32549	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18291062	X_18291062_SNP [dm3] X_18397029_SNP [dm6]	C	G	1.271e^-4	0.793	INTRON CG32549	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8342250	2L_8342250_SNP [dm3] 2L_8342250_SNP [dm6]	T	A	1.278e^-4	0.793	UPSTREAM CG14273 DOWNSTREAM CG14274 INTERGENIC
2L	10377051	2L_10377051_SNP [dm3] 2L_10377051_SNP [dm6]	A	G	1.280e^-4	0.793	INTRON dpr19	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	18291063	X_18291063_SNP [dm3] X_18397030_SNP [dm6]	C	A	1.288e^-4	0.793	INTRON CG32549	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3870958	X_3870958_SNP [dm3] X_3976925_SNP [dm6]	T	C	1.290e^-4	0.793	INTERGENIC
2L	10452626	2L_10452626_SNP [dm3] 2L_10452626_SNP [dm6]	A	G	1.290e^-4	0.793	UPSTREAM ppk10 DOWNSTREAM CG5322 INTERGENIC
2L	4463767	2L_4463767_SNP [dm3] 2L_4463767_SNP [dm6]	C	T	1.295e^-4	0.793	UTR_5_PRIME CG15436 UPSTREAM CG15443	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	15812031	3R_15812031_SNP [dm3] 3R_19986309_SNP [dm6]	G	A	1.299e^-4	0.793	INTRON Hs6st
X	283726	X_283726_SNP [dm3] X_389693_SNP [dm6]	G	A	1.308e^-4	0.793	INTRON CG32816
2R	11493723	2R_11493723_SNP [dm3] 2R_15606218_SNP [dm6]	T	A	1.314e^-4	0.793	INTERGENIC
3L	3002339	3L_3002339_INS [dm3] 3L_3002339_INS [dm6]	A	AA	1.315e^-4	0.793	INTRON FMRFaR
2L	11880439	2L_11880439_SNP [dm3] 2L_11880439_SNP [dm6]	T	G	1.316e^-4	0.793	INTRON Pde1c
3L	5879932	3L_5879932_SNP [dm3] 3L_5886832_SNP [dm6]	C	A	1.318e^-4	0.793	INTERGENIC
2R	12585726	2R_12585726_SNP [dm3] 2R_16698221_SNP [dm6]	T	A	1.322e^-4	0.793	INTRON CG30463
X	7721557	X_7721557_SNP [dm3] X_7827524_SNP [dm6]	G	T	1.333e^-4	0.793	INTRON CG1402
3R	15500614	3R_15500614_SNP [dm3] 3R_19674892_SNP [dm6]	A	T	1.344e^-4	0.793	INTRON Naam
2R	11868123	2R_11868123_SNP [dm3] 2R_15980618_SNP [dm6]	T	C	1.347e^-4	0.793	SYNONYMOUS_CODING Strn-Mlck
3L	877268	3L_877268_SNP [dm3] 3L_877268_SNP [dm6]	C	A	1.352e^-4	0.793	DOWNSTREAM CG13907 INTRON CG32479
2L	5838672	2L_5838672_SNP [dm3] 2L_5838672_SNP [dm6]	A	T	1.352e^-4	0.793	INTRON TrissinR
2R	9292549	2R_9292549_SNP [dm3] 2R_13405044_SNP [dm6]	T	G	1.355e^-4	0.793	INTERGENIC
X	15385768	X_15385768_SNP [dm3] X_15491735_SNP [dm6]	C	A	1.356e^-4	0.793	INTRON Gmap	TF binding site BDTNP1_TFBS_dl
2R	1715544	2R_1715544_SNP [dm3] 2R_5828039_SNP [dm6]	C	T	1.361e^-4	0.793	INTRON dpr12
2R	9688728	2R_9688728_SNP [dm3] 2R_13801223_SNP [dm6]	C	T	1.364e^-4	0.793	INTRON Cpr50Cb
2R	13773553	2R_13773553_SNP [dm3] 2R_17886048_SNP [dm6]	C	G	1.365e^-4	0.793	INTRON Elk
2L	19814858	2L_19814858_SNP [dm3] 2L_19814858_SNP [dm6]	G	A	1.370e^-4	0.793	UPSTREAM CG13962 DOWNSTREAM snRNA:U2:38ABa INTRON sick	TF binding site mE1_TFBS_inv
3R	24597093	3R_24597093_SNP [dm3] 3R_28771371_SNP [dm6]	A	G	1.370e^-4	0.793	INTERGENIC
3R	26811989	3R_26811989_SNP [dm3] 3R_30986267_SNP [dm6]	G	A	1.381e^-4	0.793	INTRON 5-HT7
3R	10040759	3R_10040759_SNP [dm3] 3R_14215037_SNP [dm6]	T	C	1.382e^-4	0.793	UPSTREAM Dop1R1 DOWNSTREAM CG9649 INTERGENIC
3R	23087756	3R_23087756_SNP [dm3] 3R_27262034_SNP [dm6]	T	C	1.383e^-4	0.793	DOWNSTREAM CR44049 INTRON woc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11868117	2R_11868117_SNP [dm3] 2R_15980612_SNP [dm6]	A	T	1.383e^-4	0.793	SYNONYMOUS_CODING Strn-Mlck
X	14622237	X_14622237_SNP [dm3] X_14728204_SNP [dm6]	A	G	1.393e^-4	0.796	INTRON NetB
3L	1727867	3L_1727867_SNP [dm3] 3L_1727867_SNP [dm6]	A	C	1.396e^-4	0.796	INTRON drpr	TF binding site BDTNP1_TFBS_twi
2L	6629219	2L_6629219_SNP [dm3] 2L_6629219_SNP [dm6]	A	C	1.438e^-4	0.8	INTRON Oatp26F
3R	21183928	3R_21183928_SNP [dm3] 3R_25358206_SNP [dm6]	C	T	1.443e^-4	0.8	UPSTREAM CG11913 INTRON Fur1
X	3459115	X_3459115_SNP [dm3] X_3565082_SNP [dm6]	C	A	1.446e^-4	0.8	INTRON CG32791 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3R	10040723	3R_10040723_SNP [dm3] 3R_14215001_SNP [dm6]	T	A	1.455e^-4	0.8	UPSTREAM Dop1R1 DOWNSTREAM CG9649 INTERGENIC
3R	26347851	3R_26347851_SNP [dm3] 3R_30522129_SNP [dm6]	T	C	1.459e^-4	0.8	INTRON jdp
2L	7500869	2L_7500869_SNP [dm3] 2L_7500869_SNP [dm6]	T	A	1.463e^-4	0.8	SYNONYMOUS_CODING RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	2162599	X_2162599_SNP [dm3] X_2268566_SNP [dm6]	C	T	1.471e^-4	0.8	INTRON CG2924	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12280760	2L_12280760_SNP [dm3] 2L_12280760_SNP [dm6]	T	C	1.473e^-4	0.8	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9865503	3R_9865503_SNP [dm3] 3R_14039781_SNP [dm6]	C	A	1.477e^-4	0.8	INTERGENIC
2L	6630524	2L_6630524_SNP [dm3] 2L_6630524_SNP [dm6]	C	T	1.478e^-4	0.8	INTRON Oatp26F
2L	11880407	2L_11880407_SNP [dm3] 2L_11880407_SNP [dm6]	G	A	1.481e^-4	0.8	INTRON Pde1c
X	284510	X_284510_SNP [dm3] X_390477_SNP [dm6]	T	A	1.482e^-4	0.8	INTRON CG32816
2R	11867055	2R_11867055_SNP [dm3] 2R_15979550_SNP [dm6]	G	A	1.482e^-4	0.8	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14297729	X_14297729_SNP [dm3] X_14403696_SNP [dm6]	G	A	1.485e^-4	0.8	INTRON dpr8
X	19540031	X_19540031_SNP [dm3] X_19645998_SNP [dm6]	T	A	1.486e^-4	0.8	UTR_5_PRIME Arp10 DOWNSTREAM Ranbp21	TF binding site mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
2L	11880379	2L_11880379_SNP [dm3] 2L_11880379_SNP [dm6]	C	T	1.487e^-4	0.8	INTRON Pde1c
X	14698948	X_14698948_SNP [dm3] X_14804915_SNP [dm6]	A	T	1.513e^-4	0.8	INTRON rut
3R	25964276	3R_25964276_SNP [dm3] 3R_30138554_SNP [dm6]	G	T	1.516e^-4	0.8	UTR_5_PRIME AdoR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12352335	X_12352335_SNP [dm3] X_12458302_SNP [dm6]	T	G	1.517e^-4	0.8	UPSTREAM CG15731 INTERGENIC
3R	15143713	3R_15143713_DEL [dm3] 3R_19317991_DEL [dm6]	TTGAAAAGTCT...	T	1.519e^-4	0.8	INTRON Dl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	18620014	X_18620014_SNP [dm3] X_18725981_SNP [dm6]	C	T	1.529e^-4	0.8	SYNONYMOUS_CODING CCKLR-17D1 UPSTREAM CG42302	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	15352542	3L_15352542_SNP [dm3] 3L_15359442_SNP [dm6]	T	G	1.538e^-4	0.8	INTERGENIC
2R	4531465	2R_4531465_SNP [dm3] 2R_8643960_SNP [dm6]	A	C	1.539e^-4	0.8	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7854615	3L_7854615_SNP [dm3] 3L_7861515_SNP [dm6]	C	T	1.544e^-4	0.8	INTRON Pdp1
2L	8059481	2L_8059481_SNP [dm3] 2L_8059481_SNP [dm6]	G	A	1.548e^-4	0.8	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_HSA
3R	25248490	3R_25248490_SNP [dm3] 3R_29422768_SNP [dm6]	G	T	1.563e^-4	0.8	INTRON Ptp99A
2L	13883318	2L_13883318_SNP [dm3] 2L_13883318_SNP [dm6]	C	A	1.563e^-4	0.8	INTRON CenG1A
3R	15887942	3R_15887942_SNP [dm3] 3R_20062220_SNP [dm6]	C	A	1.563e^-4	0.8	INTERGENIC
3R	22160890	3R_22160890_SNP [dm3] 3R_26335168_SNP [dm6]	A	G	1.567e^-4	0.8	INTRON CG33970
3R	10119384	3R_10119384_SNP [dm3] 3R_14293662_SNP [dm6]	G	A	1.570e^-4	0.8	INTRON CG12207
X	4571216	X_4571216_SNP [dm3] X_4677183_SNP [dm6]	T	A	1.572e^-4	0.8	INTRON rap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	20864593	3L_20864593_SNP [dm3] 3L_20871493_SNP [dm6]	C	T	1.572e^-4	0.8	INTRON CG32432
3R	24923586	3R_24923586_SNP [dm3] 3R_29097864_SNP [dm6]	T	A	1.575e^-4	0.8	SPLICE_SITE_REGION CG11873 INTRON CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24923587	3R_24923587_INS [dm3] 3R_29097865_INS [dm6]	G	GATC	1.575e^-4	0.8	SPLICE_SITE_REGION CG11873 INTRON CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24923624	3R_24923624_SNP [dm3] 3R_29097902_SNP [dm6]	G	T	1.575e^-4	0.8	INTRON CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24923625	3R_24923625_SNP [dm3] 3R_29097903_SNP [dm6]	A	G	1.575e^-4	0.8	INTRON CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24923628	3R_24923628_SNP [dm3] 3R_29097906_SNP [dm6]	C	T	1.575e^-4	0.8	INTRON CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19156320	2R_19156320_SNP [dm3] 2R_23268797_SNP [dm6]	G	A	1.580e^-4	0.8	INTERGENIC
X	4079086	X_4079086_DEL [dm3] X_4185053_DEL [dm6]	GAAG	G	1.590e^-4	0.8	INTRON Fas2
2R	11877154	2R_11877154_SNP [dm3] 2R_15989649_SNP [dm6]	T	A	1.590e^-4	0.8	UPSTREAM Strn-Mlck DOWNSTREAM CG8314 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	21994263	3R_21994263_SNP [dm3] 3R_26168541_SNP [dm6]	A	C	1.595e^-4	0.8	INTERGENIC
2L	14906306	2L_14906306_SNP [dm3] 2L_14906306_SNP [dm6]	T	C	1.600e^-4	0.8	INTERGENIC
3R	23751493	3R_23751493_SNP [dm3] 3R_27925771_SNP [dm6]	C	A	1.610e^-4	0.8	UTR_5_PRIME mino UPSTREAM CR45566 DOWNSTREAM RpL4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	10819703	3L_10819703_SNP [dm3] 3L_10826603_SNP [dm6]	A	C	1.615e^-4	0.8	INTERGENIC
2R	17025821	2R_17025821_SNP [dm3] 2R_21138316_SNP [dm6]	G	T	1.624e^-4	0.8	NON_SYNONYMOUS_CODING Magi	TF binding site mE1_TFBS_chinmo
X	19541196	X_19541196_SNP [dm3] X_19647163_SNP [dm6]	C	T	1.631e^-4	0.8	UTR_3_PRIME Ranbp21 UPSTREAM Arp10
3L	7869568	3L_7869568_SNP [dm3] 3L_7876468_SNP [dm6]	T	A	1.633e^-4	0.8	INTRON CG32365
3L	9318686	3L_9318686_SNP [dm3] 3L_9325586_SNP [dm6]	A	G	1.637e^-4	0.8	INTERGENIC
3R	10503278	3R_10503278_SNP [dm3] 3R_14677556_SNP [dm6]	A	T	1.643e^-4	0.8	INTRON Meltrin
X	22184316	X_22184316_SNP [dm3] X_22782480_SNP [dm6]	C	T	1.646e^-4	0.8	INTRON CR44997
3L	5882079	3L_5882079_SNP [dm3] 3L_5888979_SNP [dm6]	A	C	1.653e^-4	0.8	INTERGENIC
2L	11921016	2L_11921016_DEL [dm3] 2L_11921016_DEL [dm6]	ATGGTTAGG	A	1.659e^-4	0.8	INTRON Pde1c
X	4623359	X_4623359_SNP [dm3] X_4729326_SNP [dm6]	A	C	1.661e^-4	0.8	UTR_3_PRIME Proc-R DOWNSTREAM Proc-R
2L	11662275	2L_11662275_SNP [dm3] 2L_11662275_SNP [dm6]	A	C	1.665e^-4	0.8	UPSTREAM CR44479 & 1 other EXON CR44480
3R	17455886	3R_17455886_SNP [dm3] 3R_21630164_SNP [dm6]	T	G	1.668e^-4	0.8	INTRON E2f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7915581	2R_7915581_SNP [dm3] 2R_12028076_SNP [dm6]	C	A	1.668e^-4	0.8	UTR_5_PRIME pds5 UPSTREAM Mppe	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
2L	21688924	2L_21688924_DEL [dm3] 2L_21688924_DEL [dm6]	ACTATCAAATCAAGTCAATG...	A	1.672e^-4	0.8	INTRON CG31619
2R	8571000	2R_8571000_SNP [dm3] 2R_12683495_SNP [dm6]	C	A	1.680e^-4	0.8	INTRON CG8771
2L	8365885	2L_8365885_SNP [dm3] 2L_8365885_SNP [dm6]	G	A	1.680e^-4	0.8	UPSTREAM Pp2A-29B DOWNSTREAM CSN8 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	12475515	2R_12475515_SNP [dm3] 2R_16588010_SNP [dm6]	A	G	1.682e^-4	0.8	SYNONYMOUS_CODING CG8311	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13309316	3L_13309316_SNP [dm3] 3L_13316216_SNP [dm6]	G	A	1.683e^-4	0.8	INTERGENIC
3R	25851539	3R_25851539_SNP [dm3] 3R_30025817_SNP [dm6]	G	C	1.684e^-4	0.8	INTRON Axn
2R	4531467	2R_4531467_SNP [dm3] 2R_8643962_SNP [dm6]	A	T	1.685e^-4	0.8	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	6175527	2L_6175527_SNP [dm3] 2L_6175527_SNP [dm6]	A	C	1.688e^-4	0.8	INTERGENIC
3L	3182283	3L_3182283_SNP [dm3] 3L_3182283_SNP [dm6]	A	C	1.691e^-4	0.8	SYNONYMOUS_CODING Girdin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9542495	2L_9542495_SNP [dm3] 2L_9542495_SNP [dm6]	T	C	1.692e^-4	0.8	UPSTREAM Cpr30B DOWNSTREAM CG17855 INTERGENIC
3R	16541252	3R_16541252_SNP [dm3] 3R_20715530_SNP [dm6]	C	T	1.696e^-4	0.8	UPSTREAM Oamb INTERGENIC
3R	12643375	3R_12643375_DEL [dm3] 3R_16817653_DEL [dm6]	ACGA	A	1.696e^-4	0.8	INTRON abd-A	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26887428	3R_26887428_SNP [dm3] 3R_31061706_SNP [dm6]	T	A	1.697e^-4	0.8	UPSTREAM dco INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	9566524	2L_9566524_SNP [dm3] 2L_9566524_SNP [dm6]	C	T	1.701e^-4	0.8	UTR_5_PRIME jp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	21818900	3L_21818900_SNP [dm3] 3L_21825800_SNP [dm6]	C	T	1.717e^-4	0.805	SYNONYMOUS_CODING CG7414	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3181383	3L_3181383_SNP [dm3] 3L_3181383_SNP [dm6]	C	A	1.736e^-4	0.807	SYNONYMOUS_CODING Girdin
3L	11102493	3L_11102493_SNP [dm3] 3L_11109393_SNP [dm6]	G	T	1.737e^-4	0.807	NON_SYNONYMOUS_CODING CG34012 UPSTREAM CG7638 DOWNSTREAM CG12522
X	12820264	X_12820264_SNP [dm3] X_12926231_SNP [dm6]	G	T	1.738e^-4	0.807	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	19557421	3R_19557421_SNP [dm3] 3R_23731699_SNP [dm6]	G	A	1.738e^-4	0.807	SYNONYMOUS_CODING Rpn9 DOWNSTREAM CG10365	TF binding site mE1_TFBS_sens
3R	20738095	3R_20738095_SNP [dm3] 3R_24912373_SNP [dm6]	T	C	1.760e^-4	0.809	UPSTREAM CR44267 DOWNSTREAM PIG-S INTERGENIC
2L	9545408	2L_9545408_SNP [dm3] 2L_9545408_SNP [dm6]	A	C	1.769e^-4	0.809	UPSTREAM CG13114 DOWNSTREAM CG13113 INTERGENIC
X	14782457	X_14782457_SNP [dm3] X_14888424_SNP [dm6]	A	G	1.774e^-4	0.809	SYNONYMOUS_CODING CG9514 INTRON Flo2
3R	20465326	3R_20465326_SNP [dm3] 3R_24639604_SNP [dm6]	A	G	1.774e^-4	0.809	DOWNSTREAM puf INTRON puf	TF binding site mE1_TFBS_chinmo
3R	26808982	3R_26808982_INS [dm3] 3R_30983260_INS [dm6]	A	AATTTTA	1.778e^-4	0.809	INTRON 5-HT7	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	18796928	X_18796928_SNP [dm3] X_18902895_SNP [dm6]	A	G	1.778e^-4	0.809	INTRON CG7378
3R	24671973	3R_24671973_SNP [dm3] 3R_28846251_SNP [dm6]	C	A	1.783e^-4	0.809	INTRON spg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	11687798	2L_11687798_SNP [dm3] 2L_11687798_SNP [dm6]	T	G	1.790e^-4	0.809	INTERGENIC
X	12090182	X_12090182_SNP [dm3] X_12196149_SNP [dm6]	G	A	1.800e^-4	0.809	NON_SYNONYMOUS_CODING Ten-a UTR_5_PRIME Ten-a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4104923	X_4104923_SNP [dm3] X_4210890_SNP [dm6]	G	A	1.801e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15940084	2R_15940084_SNP [dm3] 2R_20052579_SNP [dm6]	G	C	1.801e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6550611	2L_6550611_SNP [dm3] 2L_6550611_SNP [dm6]	G	A	1.808e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	11493758	2R_11493758_SNP [dm3] 2R_15606253_SNP [dm6]	G	A	1.812e^-4	0.809	INTERGENIC
3L	6669062	3L_6669062_SNP [dm3] 3L_6675962_SNP [dm6]	A	C	1.812e^-4	0.809	INTERGENIC
2R	11493720	2R_11493720_SNP [dm3] 2R_15606215_SNP [dm6]	A	C	1.816e^-4	0.809	INTERGENIC
3R	24089157	3R_24089157_SNP [dm3] 3R_28263435_SNP [dm6]	T	G	1.820e^-4	0.809	DOWNSTREAM CG43124 INTRON CG43125
2L	8342259	2L_8342259_SNP [dm3] 2L_8342259_SNP [dm6]	T	C	1.824e^-4	0.809	UPSTREAM CG14273 DOWNSTREAM CG14274 INTERGENIC
X	6424876	X_6424876_DEL [dm3] X_6530843_DEL [dm6]	AA	A	1.828e^-4	0.809	DOWNSTREAM RpL7A & 2 others INTERGENIC
3R	4880935	3R_4880935_SNP [dm3] 3R_9055213_SNP [dm6]	A	G	1.832e^-4	0.809	INTRON Kdm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	13917470	3R_13917470_DEL [dm3] 3R_18091748_DEL [dm6]	TGGATGATT	T	1.832e^-4	0.809	INTRON sr
3R	26352848	3R_26352848_SNP [dm3] 3R_30527126_SNP [dm6]	G	C	1.834e^-4	0.809	UPSTREAM jdp INTERGENIC
X	14661387	X_14661387_SNP [dm3] X_14767354_SNP [dm6]	A	C	1.837e^-4	0.809	INTERGENIC
X	4103990	X_4103990_SNP [dm3] X_4209957_SNP [dm6]	T	C	1.842e^-4	0.809	INTERGENIC
X	2080320	X_2080320_SNP [dm3] X_2186287_SNP [dm6]	C	T	1.850e^-4	0.81	UPSTREAM CG17777 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	12765283	3R_12765283_SNP [dm3] 3R_16939561_SNP [dm6]	T	G	1.854e^-4	0.81	INTRON Abd-B	TF binding site mE1_TFBS_cad
2L	19814750	2L_19814750_SNP [dm3] 2L_19814750_SNP [dm6]	C	T	1.859e^-4	0.81	UPSTREAM CG13962 DOWNSTREAM snRNA:U2:38ABa INTRON sick	TF binding site mE1_TFBS_inv
2L	13995575	2L_13995575_SNP [dm3] 2L_13995575_SNP [dm6]	C	A	1.860e^-4	0.81	INTRON rk
3L	869893	3L_869893_SNP [dm3] 3L_869893_SNP [dm6]	T	A	1.869e^-4	0.81	INTRON CG12502	TF binding site mE1_TFBS_chinmo
3R	15509819	3R_15509819_SNP [dm3] 3R_19684097_SNP [dm6]	G	A	1.878e^-4	0.81	INTRON Naam
3R	4942207	3R_4942207_SNP [dm3] 3R_9116485_SNP [dm6]	C	A	1.882e^-4	0.81	INTRON pum
3L	869653	3L_869653_MNP [dm3] 3L_869653_MNP [dm6]	TTG	CCA	1.889e^-4	0.81	SPLICE_SITE_REGION CG12502 INTRON CG12502	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12611541	3L_12611541_SNP [dm3] 3L_12618441_SNP [dm6]	A	G	1.891e^-4	0.81	SYNONYMOUS_CODING caup
3R	4880783	3R_4880783_SNP [dm3] 3R_9055061_SNP [dm6]	G	A	1.891e^-4	0.81	INTRON Kdm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	26128107	3R_26128107_SNP [dm3] 3R_30302385_SNP [dm6]	C	G	1.893e^-4	0.81	INTRON hdc
2L	10377020	2L_10377020_SNP [dm3] 2L_10377020_SNP [dm6]	T	A	1.899e^-4	0.811	INTRON dpr19	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	1327240	X_1327240_SNP [dm3] X_1433207_SNP [dm6]	T	C	1.906e^-4	0.812	INTRON futsch	TF binding site mE1_TFBS_chinmo
2L	7635900	2L_7635900_SNP [dm3] 2L_7635900_SNP [dm6]	A	T	1.916e^-4	0.812	UPSTREAM CR44799 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20967243	3R_20967243_SNP [dm3] 3R_25141521_SNP [dm6]	G	A	1.920e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12396035	2R_12396035_SNP [dm3] 2R_16508530_SNP [dm6]	T	C	1.921e^-4	0.812	INTRON Sema-2a
X	6723557	X_6723557_SNP [dm3] X_6829524_SNP [dm6]	A	G	1.923e^-4	0.812	SYNONYMOUS_CODING nonC	TF binding site mE1_TFBS_chinmo
3L	7855866	3L_7855866_SNP [dm3] 3L_7862766_SNP [dm6]	C	T	1.933e^-4	0.815	INTRON Pdp1
2L	19814825	2L_19814825_SNP [dm3] 2L_19814825_SNP [dm6]	G	A	1.941e^-4	0.815	UPSTREAM CG13962 DOWNSTREAM snRNA:U2:38ABa INTRON sick	TF binding site mE1_TFBS_inv
2R	1944680	2R_1944680_SNP [dm3] 2R_6057175_SNP [dm6]	G	A	1.954e^-4	0.815	DOWNSTREAM CG7856 INTRON CCHa2-R	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9055953	X_9055953_SNP [dm3] X_9161920_SNP [dm6]	T	C	1.961e^-4	0.815	NON_SYNONYMOUS_CODING Zpr1 UPSTREAM CG44532	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	8865877	X_8865877_SNP [dm3] X_8971844_SNP [dm6]	G	C	1.964e^-4	0.815	INTRON rdgA
3R	3421168	3R_3421168_SNP [dm3] 3R_7595446_SNP [dm6]	A	T	1.966e^-4	0.815	INTRON CG34127
X	3459014	X_3459014_SNP [dm3] X_3564981_SNP [dm6]	G	A	1.969e^-4	0.815	INTRON CG32791 & 1 other
X	20693943	X_20693943_SNP [dm3] X_20822916_SNP [dm6]	C	T	1.977e^-4	0.815	INTRON shakB & 1 other
2R	14567592	2R_14567592_SNP [dm3] 2R_18680087_SNP [dm6]	G	T	1.978e^-4	0.815	INTRON CG44434 & 1 other	TF binding site BDTNP1_TFBS_da
3L	13731812	3L_13731812_SNP [dm3] 3L_13738712_SNP [dm6]	T	G	1.983e^-4	0.815	INTRON bru-3
3L	12316404	3L_12316404_SNP [dm3] 3L_12323304_SNP [dm6]	T	C	1.993e^-4	0.815	INTERGENIC
X	7757171	X_7757171_SNP [dm3] X_7863138_SNP [dm6]	G	A	1.995e^-4	0.815	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	5475950	2R_5475950_SNP [dm3] 2R_9588445_SNP [dm6]	C	T	1.996e^-4	0.815	NON_SYNONYMOUS_CODING clos UPSTREAM CG1827 DOWNSTREAM RpL31	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	6576525	X_6576525_SNP [dm3] X_6682492_SNP [dm6]	G	T	1.997e^-4	0.815	DOWNSTREAM l_1_G0255 INTRON CG4095	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24088661	3R_24088661_SNP [dm3] 3R_28262939_SNP [dm6]	G	C	1.998e^-4	0.815	SYNONYMOUS_CODING CG43125 DOWNSTREAM CG43124
X	4104065	X_4104065_SNP [dm3] X_4210032_SNP [dm6]	C	T	2.004e^-4	0.815	INTERGENIC
3R	18232983	3R_18232983_SNP [dm3] 3R_22407261_SNP [dm6]	G	A	2.006e^-4	0.815	SYNONYMOUS_CODING CG13855
2L	17722814	2L_17722814_SNP [dm3] 2L_17722814_SNP [dm6]	A	C	2.007e^-4	0.815	INTRON CadN	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16456429	2L_16456429_SNP [dm3] 2L_16456429_SNP [dm6]	G	A	2.022e^-4	0.816	INTERGENIC	regulatory region REDfly_CRMs
3L	2296432	3L_2296432_SNP [dm3] 3L_2296432_SNP [dm6]	A	T	2.024e^-4	0.816	INTRON MsR2
3L	2296433	3L_2296433_SNP [dm3] 3L_2296433_SNP [dm6]	G	A	2.024e^-4	0.816	INTRON MsR2
3L	14676229	3L_14676229_SNP [dm3] 3L_14683129_SNP [dm6]	C	A	2.030e^-4	0.817	INTRON ome
X	11413598	X_11413598_SNP [dm3] X_11519565_SNP [dm6]	T	A	2.042e^-4	0.819	INTRON Drak	TF binding site BDTNP1_TFBS_dl
3R	22160849	3R_22160849_SNP [dm3] 3R_26335127_SNP [dm6]	G	C	2.048e^-4	0.819	INTRON CG33970
2L	10845788	2L_10845788_SNP [dm3] 2L_10845788_SNP [dm6]	A	G	2.056e^-4	0.819	UTR_3_PRIME Porin2 UPSTREAM CG17139 & 1 other
3R	9586764	3R_9586764_SNP [dm3] 3R_13761042_SNP [dm6]	A	C	2.058e^-4	0.819	UTR_3_PRIME CG34383 INTRON CG34383
3L	4146394	3L_4146394_SNP [dm3] 3L_4146394_SNP [dm6]	A	G	2.058e^-4	0.819	DOWNSTREAM CG32260 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	18619367	X_18619367_SNP [dm3] X_18725334_SNP [dm6]	G	A	2.061e^-4	0.819	SYNONYMOUS_CODING CG42302 INTRON CCKLR-17D1
2L	10886886	2L_10886886_SNP [dm3] 2L_10886886_SNP [dm6]	C	A	2.067e^-4	0.82	DOWNSTREAM CG14071 INTRON CR44490	TF binding site mE1_TFBS_inv
X	2931687	X_2931687_SNP [dm3] X_3037654_SNP [dm6]	G	A	2.075e^-4	0.821	INTRON kirre
3L	12815645	3L_12815645_SNP [dm3] 3L_12822545_SNP [dm6]	G	A	2.081e^-4	0.821	SYNONYMOUS_CODING CG42588
2R	12572527	2R_12572527_SNP [dm3] 2R_16685022_SNP [dm6]	G	A	2.092e^-4	0.821	INTRON CG30463
3R	7708111	3R_7708111_SNP [dm3] 3R_11882389_SNP [dm6]	T	C	2.097e^-4	0.821	UPSTREAM CG31368 INTRON CG6962	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	4104788	X_4104788_SNP [dm3] X_4210755_SNP [dm6]	C	T	2.100e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11205602	3L_11205602_SNP [dm3] 3L_11212502_SNP [dm6]	A	G	2.103e^-4	0.821	SYNONYMOUS_CODING CG7600	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26811050	3R_26811050_SNP [dm3] 3R_30985328_SNP [dm6]	C	T	2.106e^-4	0.821	INTRON 5-HT7
X	19360349	X_19360349_SNP [dm3] X_19466316_SNP [dm6]	A	T	2.109e^-4	0.821	INTRON kek5	TF binding site mE1_TFBS_cad
3R	10059186	3R_10059186_SNP [dm3] 3R_14233464_SNP [dm6]	A	G	2.116e^-4	0.821	INTERGENIC
3L	14095876	3L_14095876_SNP [dm3] 3L_14102776_SNP [dm6]	T	C	2.118e^-4	0.821	DOWNSTREAM Sox21a INTERGENIC
3L	959303	3L_959303_SNP [dm3] 3L_959303_SNP [dm6]	G	T	2.121e^-4	0.821	UPSTREAM Glut1 INTRON Glut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14998967	3L_14998967_SNP [dm3] 3L_15005867_SNP [dm6]	A	T	2.131e^-4	0.821	INTRON Reck
X	16866702	X_16866702_SNP [dm3] X_16972669_SNP [dm6]	A	G	2.133e^-4	0.821	UTR_3_PRIME CG45002
3R	5752072	3R_5752072_SNP [dm3] 3R_9926350_SNP [dm6]	A	G	2.135e^-4	0.821	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	3062715	X_3062715_SNP [dm3] X_3168682_SNP [dm6]	C	A	2.136e^-4	0.821	SYNONYMOUS_CODING N	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4676894	3R_4676894_SNP [dm3] 3R_8851172_SNP [dm6]	A	G	2.147e^-4	0.824	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15025010	2L_15025010_SNP [dm3] 2L_15025010_SNP [dm6]	A	G	2.159e^-4	0.825	INTRON GABA-B-R1
3L	13375329	3L_13375329_SNP [dm3] 3L_13382229_SNP [dm6]	A	G	2.160e^-4	0.825	UPSTREAM CG14107 & 1 other INTERGENIC
3R	8031059	3R_8031059_SNP [dm3] 3R_12205337_SNP [dm6]	G	A	2.166e^-4	0.825	INTERGENIC
3L	2759447	3L_2759447_SNP [dm3] 3L_2759447_SNP [dm6]	A	G	2.174e^-4	0.825	INTRON Mrtf
2L	3968795	2L_3968795_SNP [dm3] 2L_3968795_SNP [dm6]	C	T	2.174e^-4	0.825	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	720143	X_720143_SNP [dm3] X_826110_SNP [dm6]	C	T	2.186e^-4	0.828	INTRON CG43867	TF binding site mE1_TFBS_HSA
2L	9568364	2L_9568364_SNP [dm3] 2L_9568364_SNP [dm6]	A	T	2.198e^-4	0.831	UPSTREAM CG3838 EXON CR44149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	12280415	2L_12280415_SNP [dm3] 2L_12280415_SNP [dm6]	T	C	2.205e^-4	0.832	INTRON aret
3R	26352784	3R_26352784_SNP [dm3] 3R_30527062_SNP [dm6]	G	A	2.220e^-4	0.834	UPSTREAM jdp INTERGENIC
3R	26352336	3R_26352336_SNP [dm3] 3R_30526614_SNP [dm6]	T	G	2.222e^-4	0.834	INTRON jdp
3R	26523869	3R_26523869_SNP [dm3] 3R_30698147_SNP [dm6]	C	A	2.224e^-4	0.834	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	253006	X_253006_SNP [dm3] X_358973_SNP [dm6]	G	A	2.228e^-4	0.834	INTRON CG32816 & 1 other	regulatory region REDfly_CRMs
2L	3737121	2L_3737121_SNP [dm3] 2L_3737121_SNP [dm6]	A	C	2.236e^-4	0.835	INTRON CG10019
2L	7650534	2L_7650534_SNP [dm3] 2L_7650534_SNP [dm6]	T	C	2.245e^-4	0.837	INTRON Slob
3R	4876445	3R_4876445_SNP [dm3] 3R_9050723_SNP [dm6]	T	G	2.248e^-4	0.837	UPSTREAM Mst85C & 1 other INTRON Mst85C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	15276780	2L_15276780_INS [dm3] 2L_15276780_INS [dm6]	A	AGGCA	2.253e^-4	0.837	INTERGENIC
2L	6594069	2L_6594069_SNP [dm3] 2L_6594069_SNP [dm6]	G	A	2.266e^-4	0.839	INTRON CG11319
X	4425768	X_4425768_SNP [dm3] X_4531735_SNP [dm6]	C	T	2.268e^-4	0.839	SYNONYMOUS_CODING CG3556 INTRON CR32773
X	20750368	X_20750368_SNP [dm3] X_20879341_SNP [dm6]	T	A	2.276e^-4	0.84	INTRON shakB
2L	7442104	2L_7442104_SNP [dm3] 2L_7442104_SNP [dm6]	C	A	2.280e^-4	0.84	INTRON CG5973
2L	4144579	2L_4144579_SNP [dm3] 2L_4144579_SNP [dm6]	T	A	2.294e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	15940099	2R_15940099_SNP [dm3] 2R_20052594_SNP [dm6]	T	A	2.299e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	4182731	2R_4182731_SNP [dm3] 2R_8295226_SNP [dm6]	C	A	2.309e^-4	0.84	INTERGENIC
3R	24088657	3R_24088657_SNP [dm3] 3R_28262935_SNP [dm6]	G	C	2.312e^-4	0.84	NON_SYNONYMOUS_CODING CG43125 DOWNSTREAM CG43124
X	285684	X_285684_SNP [dm3] X_391651_SNP [dm6]	T	A	2.313e^-4	0.84	DOWNSTREAM CR44753 INTRON CG32816
3R	14322507	3R_14322507_SNP [dm3] 3R_18496785_SNP [dm6]	A	C	2.314e^-4	0.84	INTRON fru	TF binding site mE1_TFBS_inv
X	5848731	X_5848731_SNP [dm3] X_5954698_SNP [dm6]	C	T	2.316e^-4	0.84	UPSTREAM CG6067 DOWNSTREAM CG6048 INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
X	292960	X_292960_SNP [dm3] X_398927_SNP [dm6]	T	C	2.316e^-4	0.84	INTRON CG32816	TF binding site BDTNP1_TFBS_dl
3R	20986091	3R_20986091_SNP [dm3] 3R_25160369_SNP [dm6]	G	C	2.322e^-4	0.841	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	7854625	3L_7854625_SNP [dm3] 3L_7861525_SNP [dm6]	C	G	2.330e^-4	0.842	INTRON Pdp1
3R	22160515	3R_22160515_SNP [dm3] 3R_26334793_SNP [dm6]	T	C	2.339e^-4	0.843	INTRON CG33970
3L	13731813	3L_13731813_SNP [dm3] 3L_13738713_SNP [dm6]	T	G	2.348e^-4	0.843	INTRON bru-3
3R	26811085	3R_26811085_SNP [dm3] 3R_30985363_SNP [dm6]	G	A	2.352e^-4	0.843	INTRON 5-HT7
X	335405	X_335405_SNP [dm3] X_441372_SNP [dm6]	C	T	2.356e^-4	0.843	INTRON CG32816	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	8667784	2L_8667784_SNP [dm3] 2L_8667784_SNP [dm6]	A	G	2.367e^-4	0.843	UTR_3_PRIME Sema-1a DOWNSTREAM Sema-1a
2L	4548270	2L_4548270_SNP [dm3] 2L_4548270_SNP [dm6]	T	G	2.372e^-4	0.843	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4146186	3L_4146186_SNP [dm3] 3L_4146186_SNP [dm6]	T	C	2.372e^-4	0.843	DOWNSTREAM CG32260 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	3640514	2L_3640514_SNP [dm3] 2L_3640514_SNP [dm6]	A	T	2.373e^-4	0.843	UTR_5_PRIME for	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16060833	2L_16060833_SNP [dm3] 2L_16060833_SNP [dm6]	T	G	2.380e^-4	0.843	INTRON beat-Ia
X	270817	X_270817_DEL [dm3] X_376784_DEL [dm6]	ACTTTGA	A	2.381e^-4	0.843	UPSTREAM CR44751 INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	10897443	2L_10897443_SNP [dm3] 2L_10897443_SNP [dm6]	A	G	2.383e^-4	0.843	INTERGENIC
3R	17391127	3R_17391127_SNP [dm3] 3R_21565405_SNP [dm6]	T	C	2.390e^-4	0.843	INTERGENIC	regulatory region REDfly_CRMs
3R	22160908	3R_22160908_SNP [dm3] 3R_26335186_SNP [dm6]	A	G	2.393e^-4	0.843	INTRON CG33970
3R	25246416	3R_25246416_SNP [dm3] 3R_29420694_SNP [dm6]	A	G	2.394e^-4	0.843	INTRON Ptp99A	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
X	3133116	X_3133116_SNP [dm3] X_3239083_SNP [dm6]	G	T	2.403e^-4	0.844	DOWNSTREAM ng2 INTRON dnc	TF binding site mE1_TFBS_HSA
X	16070025	X_16070025_SNP [dm3] X_16175992_SNP [dm6]	G	C	2.423e^-4	0.847	INTERGENIC
3R	14335563	3R_14335563_SNP [dm3] 3R_18509841_SNP [dm6]	T	C	2.429e^-4	0.847	INTRON fru
2L	16060617	2L_16060617_SNP [dm3] 2L_16060617_SNP [dm6]	T	C	2.430e^-4	0.847	INTRON beat-Ia
X	4649418	X_4649418_SNP [dm3] X_4755385_SNP [dm6]	G	A	2.430e^-4	0.847	INTERGENIC
2L	8546338	2L_8546338_SNP [dm3] 2L_8546338_SNP [dm6]	T	G	2.436e^-4	0.847	INTRON Sema-1a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	273624	X_273624_INS [dm3] X_379591_INS [dm6]	A	AA	2.443e^-4	0.847	INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	16694836	3L_16694836_INS [dm3] 3L_16701736_INS [dm6]	A	AGCTCA	2.444e^-4	0.847	INTRON Lasp & 1 other
X	249435	X_249435_SNP [dm3] X_355402_SNP [dm6]	G	A	2.446e^-4	0.847	INTRON CG32816	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_cad
3R	7068395	3R_7068395_SNP [dm3] 3R_11242673_SNP [dm6]	A	T	2.455e^-4	0.848	UTR_3_PRIME CG17734 DOWNSTREAM scpr-A INTRON CG17734
2R	5472216	2R_5472216_SNP [dm3] 2R_9584711_SNP [dm6]	A	C	2.459e^-4	0.848	UTR_5_PRIME Updo UPSTREAM CG1868	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9492334	3L_9492334_SNP [dm3] 3L_9499234_SNP [dm6]	G	A	2.464e^-4	0.848	INTRON path
X	3459136	X_3459136_SNP [dm3] X_3565103_SNP [dm6]	A	C	2.473e^-4	0.848	INTRON CG32791 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3L	11295917	3L_11295917_SNP [dm3] 3L_11302817_SNP [dm6]	A	T	2.475e^-4	0.848	INTERGENIC
3R	15811984	3R_15811984_SNP [dm3] 3R_19986262_SNP [dm6]	C	T	2.485e^-4	0.848	INTRON Hs6st
2L	12280411	2L_12280411_SNP [dm3] 2L_12280411_SNP [dm6]	G	T	2.500e^-4	0.848	INTRON aret
3R	14167923	3R_14167923_SNP [dm3] 3R_18342201_SNP [dm6]	T	G	2.510e^-4	0.848	INTRON CG15803
2L	15989848	2L_15989848_SNP [dm3] 2L_15989848_SNP [dm6]	A	C	2.510e^-4	0.848	EXON CR43412	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11360994	2L_11360994_SNP [dm3] 2L_11360994_SNP [dm6]	G	C	2.524e^-4	0.848	INTRON salr	regulatory region REDfly_CRMs
3R	21716853	3R_21716853_SNP [dm3] 3R_25891131_SNP [dm6]	C	T	2.525e^-4	0.848	SYNONYMOUS_CODING Lnk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	346070	X_346070_SNP [dm3] X_452037_SNP [dm6]	G	T	2.529e^-4	0.848	INTRON CG32816	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	1937955	2R_1937955_SNP [dm3] 2R_6050450_SNP [dm6]	A	T	2.532e^-4	0.848	UPSTREAM CCHa2-R & 1 other INTERGENIC
3R	3541411	3R_3541411_SNP [dm3] 3R_7715689_SNP [dm6]	A	T	2.533e^-4	0.848	INTERGENIC
X	14895770	X_14895770_INS [dm3] X_15001737_INS [dm6]	A	AA	2.537e^-4	0.848	INTRON eag
3L	1445341	3L_1445341_SNP [dm3] 3L_1445341_SNP [dm6]	G	T	2.539e^-4	0.848	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	1445342	3L_1445342_SNP [dm3] 3L_1445342_SNP [dm6]	C	T	2.539e^-4	0.848	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	7518198	2L_7518198_SNP [dm3] 2L_7518198_SNP [dm6]	G	A	2.540e^-4	0.848	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da
2L	6591424	2L_6591424_SNP [dm3] 2L_6591424_SNP [dm6]	A	G	2.544e^-4	0.848	INTRON CG11319
3R	1901484	3R_1901484_SNP [dm3] 3R_6075762_SNP [dm6]	T	C	2.545e^-4	0.848	INTERGENIC
X	284888	X_284888_SNP [dm3] X_390855_SNP [dm6]	C	G	2.550e^-4	0.848	DOWNSTREAM CR44753 INTRON CG32816
3L	7838429	3L_7838429_SNP [dm3] 3L_7845329_SNP [dm6]	A	C	2.553e^-4	0.848	INTRON Pdp1	regulatory region REDfly_CRMs
X	18620059	X_18620059_SNP [dm3] X_18726026_SNP [dm6]	G	C	2.558e^-4	0.848	SYNONYMOUS_CODING CCKLR-17D1 UPSTREAM CG42302	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	13335364	2R_13335364_DEL [dm3] 2R_17447859_DEL [dm6]	TCTGGCATG	T	2.560e^-4	0.848	UPSTREAM mthl4 DOWNSTREAM mthl3 INTERGENIC
2L	6594086	2L_6594086_SNP [dm3] 2L_6594086_SNP [dm6]	C	A	2.567e^-4	0.848	INTRON CG11319	TF binding site BDTNP1_TFBS_dl
2L	5839759	2L_5839759_SNP [dm3] 2L_5839759_SNP [dm6]	G	A	2.570e^-4	0.848	INTRON TrissinR
X	18291111	X_18291111_DEL [dm3] X_18397078_DEL [dm6]	TTT	T	2.573e^-4	0.848	INTRON CG32549	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13314506	3L_13314506_SNP [dm3] 3L_13321406_SNP [dm6]	C	T	2.584e^-4	0.85	INTERGENIC
2L	11662274	2L_11662274_SNP [dm3] 2L_11662274_SNP [dm6]	A	C	2.593e^-4	0.852	UPSTREAM CR44479 & 1 other EXON CR44480
2R	17568895	2R_17568895_SNP [dm3] 2R_21681390_SNP [dm6]	C	G	2.602e^-4	0.853	INTRON CG30263
2L	9542773	2L_9542773_SNP [dm3] 2L_9542773_SNP [dm6]	C	T	2.608e^-4	0.854	UPSTREAM Cpr30B DOWNSTREAM CG17855 INTERGENIC
X	19220513	X_19220513_SNP [dm3] X_19326480_SNP [dm6]	T	G	2.613e^-4	0.854	DOWNSTREAM nAChRalpha7 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
3R	26811988	3R_26811988_SNP [dm3] 3R_30986266_SNP [dm6]	T	C	2.630e^-4	0.856	INTRON 5-HT7
2L	3968782	2L_3968782_SNP [dm3] 2L_3968782_SNP [dm6]	C	T	2.631e^-4	0.856	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	5871915	2L_5871915_SNP [dm3] 2L_5871915_SNP [dm6]	G	A	2.644e^-4	0.856	INTRON rau	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2R	2005155	2R_2005155_SNP [dm3] 2R_6117650_SNP [dm6]	C	T	2.644e^-4	0.856	INTRON EcR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	15352558	3L_15352558_SNP [dm3] 3L_15359458_SNP [dm6]	T	C	2.645e^-4	0.856	INTERGENIC
X	11413628	X_11413628_SNP [dm3] X_11519595_SNP [dm6]	G	A	2.651e^-4	0.856	INTRON Drak	TF binding site BDTNP1_TFBS_dl
2L	4548273	2L_4548273_SNP [dm3] 2L_4548273_SNP [dm6]	G	A	2.655e^-4	0.856	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	268218	X_268218_DEL [dm3] X_374185_DEL [dm6]	GCCGG	G	2.658e^-4	0.856	INTRON CG32816	regulatory region REDfly_CRMs
X	3899503	X_3899503_SNP [dm3] X_4005470_SNP [dm6]	C	T	2.662e^-4	0.856	INTERGENIC
2R	19792379	2R_19792379_SNP [dm3] 2R_23904856_SNP [dm6]	T	C	2.667e^-4	0.856	SYNONYMOUS_CODING CG13562 DOWNSTREAM Nap1
3L	7855730	3L_7855730_SNP [dm3] 3L_7862630_SNP [dm6]	A	T	2.674e^-4	0.856	INTRON Pdp1
3L	16556338	3L_16556338_SNP [dm3] 3L_16563238_SNP [dm6]	T	A	2.681e^-4	0.856	DOWNSTREAM Mipp1 INTERGENIC	TF binding site mE1_TFBS_bab1
X	11413524	X_11413524_SNP [dm3] X_11519491_SNP [dm6]	T	C	2.683e^-4	0.856	INTRON Drak	TF binding site BDTNP1_TFBS_dl
2R	12585969	2R_12585969_SNP [dm3] 2R_16698464_SNP [dm6]	G	A	2.699e^-4	0.856	INTRON CG30463
3L	20865147	3L_20865147_SNP [dm3] 3L_20872047_SNP [dm6]	C	G	2.703e^-4	0.856	INTRON CG32432
3L	17972556	3L_17972556_SNP [dm3] 3L_17979456_SNP [dm6]	A	G	2.705e^-4	0.856	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
3L	13731801	3L_13731801_SNP [dm3] 3L_13738701_SNP [dm6]	C	A	2.711e^-4	0.856	INTRON bru-3
2R	14574714	2R_14574714_SNP [dm3] 2R_18687209_SNP [dm6]	G	A	2.711e^-4	0.856	UPSTREAM CG42855 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	12396224	2R_12396224_SNP [dm3] 2R_16508719_SNP [dm6]	A	C	2.713e^-4	0.856	INTRON Sema-2a
X	4204068	X_4204068_SNP [dm3] X_4310035_SNP [dm6]	T	G	2.717e^-4	0.856	INTERGENIC
3L	11875243	3L_11875243_SNP [dm3] 3L_11882143_SNP [dm6]	T	C	2.720e^-4	0.856	SYNONYMOUS_CODING CCDC151 DOWNSTREAM CG14128 INTRON CG44837
3L	15352551	3L_15352551_SNP [dm3] 3L_15359451_SNP [dm6]	G	A	2.722e^-4	0.856	INTERGENIC
3L	2018248	3L_2018248_SNP [dm3] 3L_2018248_SNP [dm6]	A	T	2.724e^-4	0.856	INTERGENIC
3R	20738256	3R_20738256_DEL [dm3] 3R_24912534_DEL [dm6]	ATTCCAAATATTTGTGAGAA...	A	2.740e^-4	0.859	UPSTREAM CR44267 DOWNSTREAM PIG-S INTERGENIC
X	4103961	X_4103961_SNP [dm3] X_4209928_SNP [dm6]	T	C	2.743e^-4	0.859	INTERGENIC
X	6415344	X_6415344_DEL [dm3] X_6521311_DEL [dm6]	CTTGGGTG	C	2.757e^-4	0.861	INTRON CG42340
3L	5879752	3L_5879752_SNP [dm3] 3L_5886652_SNP [dm6]	G	A	2.760e^-4	0.861	INTERGENIC
2L	3737120	2L_3737120_SNP [dm3] 2L_3737120_SNP [dm6]	C	T	2.764e^-4	0.861	INTRON CG10019
3R	24446827	3R_24446827_SNP [dm3] 3R_28621105_SNP [dm6]	A	T	2.775e^-4	0.861	INTRON CG10011	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20029262	2L_20029262_SNP [dm3] 2L_20029262_SNP [dm6]	G	A	2.779e^-4	0.861	INTRON sNPF
2L	4867668	2L_4867668_SNP [dm3] 2L_4867668_SNP [dm6]	G	A	2.784e^-4	0.861	INTRON pog
2L	13883337	2L_13883337_SNP [dm3] 2L_13883337_SNP [dm6]	C	G	2.786e^-4	0.861	INTRON CenG1A
2L	11881256	2L_11881256_SNP [dm3] 2L_11881256_SNP [dm6]	A	C	2.789e^-4	0.861	INTRON Pde1c	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24467563	3R_24467563_SNP [dm3] 3R_28641841_SNP [dm6]	G	A	2.789e^-4	0.861	SYNONYMOUS_CODING CG14062	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15125335	2L_15125335_SNP [dm3] 2L_15125335_SNP [dm6]	G	T	2.794e^-4	0.861	INTERGENIC
3R	18762934	3R_18762934_SNP [dm3] 3R_22937212_SNP [dm6]	C	T	2.814e^-4	0.864	INTRON klg
3R	11350118	3R_11350118_SNP [dm3] 3R_15524396_SNP [dm6]	T	G	2.819e^-4	0.864	INTERGENIC
2R	11866912	2R_11866912_SNP [dm3] 2R_15979407_SNP [dm6]	G	T	2.819e^-4	0.864	NON_SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_sens
X	16070013	X_16070013_SNP [dm3] X_16175980_SNP [dm6]	G	C	2.824e^-4	0.864	INTERGENIC
2L	5846450	2L_5846450_SNP [dm3] 2L_5846450_SNP [dm6]	C	G	2.832e^-4	0.865	INTRON TrissinR
3L	1728572	3L_1728572_DEL [dm3] 3L_1728572_DEL [dm6]	CATATGTTTGGCGTTCAGTG...	C	2.841e^-4	0.866	INTRON drpr	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	10540782	2R_10540782_SNP [dm3] 2R_14653277_SNP [dm6]	A	G	2.856e^-4	0.87	INTERGENIC
X	8878525	X_8878525_SNP [dm3] X_8984492_SNP [dm6]	G	A	2.879e^-4	0.87	UPSTREAM CG12662 INTRON rdgA & 1 other
X	6723512	X_6723512_SNP [dm3] X_6829479_SNP [dm6]	G	A	2.880e^-4	0.87	SYNONYMOUS_CODING nonC	TF binding site mE1_TFBS_chinmo
X	14941643	X_14941643_SNP [dm3] X_15047610_SNP [dm6]	T	C	2.887e^-4	0.87	INTRON hiw & 1 other
2R	12272948	2R_12272948_SNP [dm3] 2R_16385443_SNP [dm6]	C	G	2.904e^-4	0.87	UTR_3_PRIME CG43187
2L	11662260	2L_11662260_SNP [dm3] 2L_11662260_SNP [dm6]	C	T	2.905e^-4	0.87	UPSTREAM CR44479 & 1 other EXON CR44480
X	1717680	X_1717680_SNP [dm3] X_1823647_SNP [dm6]	A	T	2.909e^-4	0.87	UPSTREAM CG42666 INTRON CG42666	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11483809	2R_11483809_SNP [dm3] 2R_15596304_SNP [dm6]	A	G	2.913e^-4	0.87	INTERGENIC
2L	14344002	2L_14344002_SNP [dm3] 2L_14344002_SNP [dm6]	T	C	2.913e^-4	0.87	SYNONYMOUS_CODING CG33090	TF binding site mE1_TFBS_cad
2L	9542771	2L_9542771_SNP [dm3] 2L_9542771_SNP [dm6]	G	A	2.923e^-4	0.87	UPSTREAM Cpr30B DOWNSTREAM CG17855 INTERGENIC
X	1323791	X_1323791_SNP [dm3] X_1429758_SNP [dm6]	A	G	2.925e^-4	0.87	INTRON futsch	TF binding site mE1_TFBS_chinmo
3R	5752132	3R_5752132_SNP [dm3] 3R_9926410_SNP [dm6]	G	C	2.926e^-4	0.87	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	11028748	3R_11028748_SNP [dm3] 3R_15203026_SNP [dm6]	A	G	2.926e^-4	0.87	UTR_3_PRIME CG42542 DOWNSTREAM Spn88Ea & 1 other
2R	9105907	2R_9105907_SNP [dm3] 2R_13218402_SNP [dm6]	T	A	2.930e^-4	0.87	DOWNSTREAM CG4646 INTRON CG4630
3L	10282680	3L_10282680_SNP [dm3] 3L_10289580_SNP [dm6]	C	T	2.936e^-4	0.87	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6587287	2L_6587287_SNP [dm3] 2L_6587287_SNP [dm6]	C	T	2.946e^-4	0.87	INTRON CG11319
3L	11394680	3L_11394680_SNP [dm3] 3L_11401580_SNP [dm6]	C	T	2.953e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	14567651	2R_14567651_SNP [dm3] 2R_18680146_SNP [dm6]	A	G	2.958e^-4	0.87	SYNONYMOUS_CODING CG44435 UTR_3_PRIME CG44434	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3R	23087727	3R_23087727_SNP [dm3] 3R_27262005_SNP [dm6]	G	A	2.962e^-4	0.87	DOWNSTREAM CR44049 INTRON woc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13238935	2R_13238935_INS [dm3] 2R_17351430_INS [dm6]	T	TT	2.965e^-4	0.87	INTRON mbl
2L	11358411	2L_11358411_SNP [dm3] 2L_11358411_SNP [dm6]	A	T	2.966e^-4	0.87	UPSTREAM salr INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10910585	2L_10910585_SNP [dm3] 2L_10910585_SNP [dm6]	G	C	2.968e^-4	0.87	UTR_5_PRIME CG14069 UPSTREAM CG14069
3R	9635383	3R_9635383_DEL [dm3] 3R_13809661_DEL [dm6]	GAAAGCCAGG	G	2.970e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5839814	2L_5839814_SNP [dm3] 2L_5839814_SNP [dm6]	T	C	2.974e^-4	0.87	INTRON TrissinR
2R	19282384	2R_19282384_SNP [dm3] 2R_23394861_SNP [dm6]	C	T	2.992e^-4	0.87	INTRON CG3530	TF binding site mE1_TFBS_chinmo
2R	19282402	2R_19282402_SNP [dm3] 2R_23394879_SNP [dm6]	A	C	2.992e^-4	0.87	INTRON CG3530	TF binding site mE1_TFBS_chinmo
2R	19282407	2R_19282407_MNP [dm3] 2R_23394884_MNP [dm6]	GGA	ATC	2.992e^-4	0.87	INTRON CG3530	TF binding site mE1_TFBS_chinmo
2R	19283008	2R_19283008_SNP [dm3] 2R_23395485_SNP [dm6]	A	T	2.992e^-4	0.87	UPSTREAM CG3530 INTRON CG3530	TF binding site mE1_TFBS_Trl
2L	12298957	2L_12298957_SNP [dm3] 2L_12298957_SNP [dm6]	T	G	2.994e^-4	0.87	SYNONYMOUS_CODING aret	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	1065366	3L_1065366_SNP [dm3] 3L_1065366_SNP [dm6]	G	A	2.995e^-4	0.87	INTRON bab1
X	20731972	X_20731972_SNP [dm3] X_20860945_SNP [dm6]	C	T	3.001e^-4	0.87	INTRON shakB
2R	5589191	2R_5589191_SNP [dm3] 2R_9701686_SNP [dm6]	C	T	3.002e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3968771	2L_3968771_SNP [dm3] 2L_3968771_SNP [dm6]	T	C	3.020e^-4	0.873	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	4103869	X_4103869_DEL [dm3] X_4209836_DEL [dm6]	TTCGAAGTTT	T	3.022e^-4	0.873	INTERGENIC
2L	21290168	2L_21290168_SNP [dm3] 2L_21290168_SNP [dm6]	G	A	3.033e^-4	0.873	UPSTREAM Gr39a INTRON Mio
3R	26523955	3R_26523955_SNP [dm3] 3R_30698233_SNP [dm6]	G	C	3.039e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16735465	X_16735465_SNP [dm3] X_16841432_SNP [dm6]	G	A	3.046e^-4	0.873	INTRON RSG7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8564048	2R_8564048_SNP [dm3] 2R_12676543_SNP [dm6]	T	C	3.053e^-4	0.873	UTR_5_PRIME CG42708 UPSTREAM CG42708 INTRON CG42708	TF binding site mE1_TFBS_inv
2L	6629215	2L_6629215_SNP [dm3] 2L_6629215_SNP [dm6]	T	C	3.057e^-4	0.873	INTRON Oatp26F
X	3898606	X_3898606_SNP [dm3] X_4004573_SNP [dm6]	C	T	3.066e^-4	0.873	INTERGENIC
2L	9646169	2L_9646169_SNP [dm3] 2L_9646169_SNP [dm6]	A	G	3.067e^-4	0.873	SYNONYMOUS_CODING Apoltp
3L	22162264	3L_22162264_SNP [dm3] 3L_22169164_SNP [dm6]	C	T	3.070e^-4	0.873	INTRON olf413	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8052163	3L_8052163_DEL [dm3] 3L_8059063_DEL [dm6]	GTAG	G	3.072e^-4	0.873	UPSTREAM bip1 INTERGENIC	TF binding site mE1_TFBS_cad
3R	7604471	3R_7604471_SNP [dm3] 3R_11778749_SNP [dm6]	T	A	3.075e^-4	0.873	UPSTREAM l_3_neo38 INTRON l_3_neo38	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
2R	17390990	2R_17390990_SNP [dm3] 2R_21503485_SNP [dm6]	A	T	3.080e^-4	0.873	INTRON MESK2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_Trl
2L	10719930	2L_10719930_SNP [dm3] 2L_10719930_SNP [dm6]	C	T	3.087e^-4	0.873	INTERGENIC
2L	11877871	2L_11877871_SNP [dm3] 2L_11877871_SNP [dm6]	A	T	3.089e^-4	0.873	UPSTREAM Pde1c INTRON Pde1c
X	15869989	X_15869989_SNP [dm3] X_15975956_SNP [dm6]	T	C	3.107e^-4	0.873	UPSTREAM CG42766 INTRON Or13a
X	2892952	X_2892952_SNP [dm3] X_2998919_SNP [dm6]	T	G	3.113e^-4	0.873	INTRON kirre
3R	4876234	3R_4876234_SNP [dm3] 3R_9050512_SNP [dm6]	T	A	3.113e^-4	0.873	UTR_5_PRIME Nmdmc UPSTREAM Mst85C INTRON Mst85C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	19540719	X_19540719_SNP [dm3] X_19646686_SNP [dm6]	T	A	3.116e^-4	0.873	UTR_3_PRIME Ranbp21 UPSTREAM Arp10	TF binding site mE1_TFBS_HSA
X	15776846	X_15776846_SNP [dm3] X_15882813_SNP [dm6]	A	G	3.118e^-4	0.873	INTRON tay
X	19571499	X_19571499_SNP [dm3] X_19677466_SNP [dm6]	G	A	3.120e^-4	0.873	SYNONYMOUS_CODING dome	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13716013	2L_13716013_SNP [dm3] 2L_13716013_SNP [dm6]	T	C	3.133e^-4	0.873	INTRON CG31814
3R	23079012	3R_23079012_SNP [dm3] 3R_27253290_SNP [dm6]	G	T	3.135e^-4	0.873	UPSTREAM TfIIA-L & 1 other INTRON TfIIA-L	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu
3R	26368471	3R_26368471_SNP [dm3] 3R_30542749_SNP [dm6]	A	C	3.137e^-4	0.873	INTRON tmod	TF binding site BDTNP1_TFBS_twi
X	4103974	X_4103974_SNP [dm3] X_4209941_SNP [dm6]	G	A	3.138e^-4	0.873	INTERGENIC
2L	7699402	2L_7699402_SNP [dm3] 2L_7699402_SNP [dm6]	C	T	3.142e^-4	0.873	SYNONYMOUS_CODING Tep2	TF binding site mE1_TFBS_sens
2L	3966909	2L_3966909_SNP [dm3] 2L_3966909_SNP [dm6]	A	G	3.143e^-4	0.873	INTRON fred
3R	13297275	3R_13297275_SNP [dm3] 3R_17471553_SNP [dm6]	T	C	3.147e^-4	0.873	INTERGENIC
3L	2296416	3L_2296416_SNP [dm3] 3L_2296416_SNP [dm6]	C	T	3.161e^-4	0.873	INTRON MsR2
3L	7838535	3L_7838535_SNP [dm3] 3L_7845435_SNP [dm6]	C	T	3.163e^-4	0.873	INTRON Pdp1	regulatory region REDfly_CRMs
X	11821465	X_11821465_SNP [dm3] X_11927432_SNP [dm6]	C	T	3.177e^-4	0.873	SYNONYMOUS_CODING CG10362
3R	12778592	3R_12778592_SNP [dm3] 3R_16952870_SNP [dm6]	T	C	3.183e^-4	0.873	INTRON Abd-B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5217826	X_5217826_INS [dm3] X_5323793_INS [dm6]	T	TGTAT	3.195e^-4	0.873	UPSTREAM Mcm3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_ttk
2L	15742340	2L_15742340_SNP [dm3] 2L_15742340_SNP [dm6]	C	T	3.196e^-4	0.873	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2403364	2R_2403364_SNP [dm3] 2R_6515859_SNP [dm6]	T	C	3.201e^-4	0.873	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	16060922	2L_16060922_SNP [dm3] 2L_16060922_SNP [dm6]	G	A	3.203e^-4	0.873	INTRON beat-Ia
2R	19283940	2R_19283940_SNP [dm3] 2R_23396417_SNP [dm6]	C	G	3.213e^-4	0.873	UPSTREAM CG3530 DOWNSTREAM CG3520 INTRON CG3530
X	4208355	X_4208355_SNP [dm3] X_4314322_SNP [dm6]	A	G	3.215e^-4	0.873	UTR_3_PRIME mei-9 INTRON CR44957
3L	20865321	3L_20865321_SNP [dm3] 3L_20872221_SNP [dm6]	G	A	3.217e^-4	0.873	INTRON CG32432
X	3248920	X_3248920_SNP [dm3] X_3354887_SNP [dm6]	T	C	3.217e^-4	0.873	INTERGENIC
2R	14665932	2R_14665932_SNP [dm3] 2R_18778427_SNP [dm6]	G	C	3.218e^-4	0.873	INTERGENIC
2L	15989747	2L_15989747_SNP [dm3] 2L_15989747_SNP [dm6]	T	G	3.239e^-4	0.873	UPSTREAM CR43412 INTERGENIC
2L	17250765	2L_17250765_SNP [dm3] 2L_17250765_SNP [dm6]	A	G	3.240e^-4	0.873	INTRON beat-IIIc	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3R	3821174	3R_3821174_SNP [dm3] 3R_7995452_SNP [dm6]	A	G	3.248e^-4	0.873	UTR_5_PRIME CG2781
X	15166875	X_15166875_SNP [dm3] X_15272842_SNP [dm6]	C	T	3.270e^-4	0.873	UPSTREAM CG9106 INTERGENIC
3L	3199321	3L_3199321_SNP [dm3] 3L_3199321_SNP [dm6]	T	C	3.277e^-4	0.873	UTR_5_PRIME gry UPSTREAM CG32276	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
X	15445548	X_15445548_SNP [dm3] X_15551515_SNP [dm6]	G	A	3.278e^-4	0.873	INTRON Ac13E	TF binding site mE1_TFBS_Kr
2L	19430458	2L_19430458_SNP [dm3] 2L_19430458_SNP [dm6]	A	G	3.278e^-4	0.873	UPSTREAM CG9987 DOWNSTREAM CG13085 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
2L	10896778	2L_10896778_SNP [dm3] 2L_10896778_SNP [dm6]	T	G	3.284e^-4	0.873	INTERGENIC
X	19540102	X_19540102_SNP [dm3] X_19646069_SNP [dm6]	C	A	3.308e^-4	0.873	START_GAINED Arp10 UTR_5_PRIME Arp10 UPSTREAM Arp10 DOWNSTREAM Ranbp21	TF binding site mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
3R	24667200	3R_24667200_SNP [dm3] 3R_28841478_SNP [dm6]	A	G	3.312e^-4	0.873	INTRON Apc	TF binding site BDTNP1_TFBS_twi
2R	4588852	2R_4588852_SNP [dm3] 2R_8701347_SNP [dm6]	G	A	3.314e^-4	0.873	SYNONYMOUS_CODING CG8584 UPSTREAM CG12376	TF binding site BDTNP1_TFBS_sna
3L	5877264	3L_5877264_INS [dm3] 3L_5884164_INS [dm6]	G	GATCTT	3.315e^-4	0.873	DOWNSTREAM CG13287 INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	17937314	X_17937314_SNP [dm3] X_18043281_SNP [dm6]	T	C	3.319e^-4	0.873	UPSTREAM CG15373 INTRON Sh
2R	1952854	2R_1952854_SNP [dm3] 2R_6065349_SNP [dm6]	T	C	3.333e^-4	0.873	INTRON CCHa2-R	TF binding site mE1_TFBS_cad
X	4002219	X_4002219_SNP [dm3] X_4108186_SNP [dm6]	C	G	3.340e^-4	0.873	UPSTREAM cib INTRON cib	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_sens
2L	12454802	2L_12454802_SNP [dm3] 2L_12454802_SNP [dm6]	G	A	3.342e^-4	0.873	DOWNSTREAM bun EXON CR17024	TF binding site mE1_TFBS_sens
X	3458767	X_3458767_SNP [dm3] X_3564734_SNP [dm6]	C	T	3.344e^-4	0.873	INTRON CG32791 & 1 other
3R	23995553	3R_23995553_DEL [dm3] 3R_28169831_DEL [dm6]	TT	T	3.346e^-4	0.873	INTRON CG34354
3L	7851192	3L_7851192_SNP [dm3] 3L_7858092_SNP [dm6]	T	C	3.350e^-4	0.873	INTRON Pdp1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17905304	2R_17905304_SNP [dm3] 2R_22017799_SNP [dm6]	G	T	3.351e^-4	0.873	INTRON CG34370
3L	9820445	3L_9820445_SNP [dm3] 3L_9827345_SNP [dm6]	A	G	3.359e^-4	0.873	SYNONYMOUS_CODING CG43897 INTRON CG43897	TF binding site mE1_TFBS_cad
X	13271162	X_13271162_SNP [dm3] X_13377129_SNP [dm6]	C	T	3.361e^-4	0.873	INTRON CG1640
2L	6098867	2L_6098867_SNP [dm3] 2L_6098867_SNP [dm6]	T	C	3.369e^-4	0.873	UTR_5_PRIME CG9175 INTRON CG9175	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	310327	X_310327_SNP [dm3] X_416294_SNP [dm6]	A	G	3.372e^-4	0.873	INTRON CG32816	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	1555860	3L_1555860_SNP [dm3] 3L_1555860_SNP [dm6]	A	G	3.374e^-4	0.873	SYNONYMOUS_CODING CG12099 DOWNSTREAM Cct2	TF binding site mE1_TFBS_cad
X	4104964	X_4104964_SNP [dm3] X_4210931_SNP [dm6]	C	T	3.377e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22158749	3L_22158749_SNP [dm3] 3L_22165649_SNP [dm6]	C	T	3.391e^-4	0.873	INTRON olf413	TF binding site mE1_TFBS_chinmo
2L	7696879	2L_7696879_SNP [dm3] 2L_7696879_SNP [dm6]	T	A	3.398e^-4	0.873	INTRON Tep2
3L	4146295	3L_4146295_SNP [dm3] 3L_4146295_SNP [dm6]	C	A	3.400e^-4	0.873	DOWNSTREAM CG32260 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	7797329	2L_7797329_SNP [dm3] 2L_7797329_SNP [dm6]	A	T	3.401e^-4	0.873	INTRON Herp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13731844	3L_13731844_SNP [dm3] 3L_13738744_SNP [dm6]	A	C	3.402e^-4	0.873	INTRON bru-3
X	14316960	X_14316960_SNP [dm3] X_14422927_SNP [dm6]	A	G	3.403e^-4	0.873	INTRON dpr8
3L	9897135	3L_9897135_SNP [dm3] 3L_9904035_SNP [dm6]	T	C	3.409e^-4	0.873	INTERGENIC
X	12610551	X_12610551_SNP [dm3] X_12716518_SNP [dm6]	A	G	3.411e^-4	0.873	INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2296428	3L_2296428_SNP [dm3] 3L_2296428_SNP [dm6]	A	G	3.415e^-4	0.873	INTRON MsR2
3L	20701404	3L_20701404_SNP [dm3] 3L_20708304_SNP [dm6]	T	C	3.424e^-4	0.873	INTERGENIC	regulatory region REDfly_CRMs
X	18933032	X_18933032_SNP [dm3] X_19038999_SNP [dm6]	C	G	3.425e^-4	0.873	INTERGENIC
2L	21067984	2L_21067984_SNP [dm3] 2L_21067984_SNP [dm6]	T	G	3.426e^-4	0.873	INTRON CG9265
2L	8544439	2L_8544439_SNP [dm3] 2L_8544439_SNP [dm6]	C	T	3.430e^-4	0.873	INTRON Sema-1a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	11868270	2R_11868270_SNP [dm3] 2R_15980765_SNP [dm6]	A	G	3.435e^-4	0.873	SYNONYMOUS_CODING Strn-Mlck
2R	19283111	2R_19283111_SNP [dm3] 2R_23395588_SNP [dm6]	T	A	3.440e^-4	0.873	UPSTREAM CG3530 INTRON CG3530	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	13171601	2R_13171601_SNP [dm3] 2R_17284096_SNP [dm6]	T	C	3.440e^-4	0.873	INTRON mbl
2L	13099437	2L_13099437_SNP [dm3] 2L_13099437_SNP [dm6]	A	T	3.444e^-4	0.873	INTERGENIC
3R	7359636	3R_7359636_SNP [dm3] 3R_11533914_SNP [dm6]	T	A	3.449e^-4	0.873	UTR_3_PRIME dpr4
X	8860028	X_8860028_SNP [dm3] X_8965995_SNP [dm6]	C	T	3.449e^-4	0.873	DOWNSTREAM mir-4964 INTRON rdgA
3L	13536837	3L_13536837_SNP [dm3] 3L_13543737_SNP [dm6]	G	A	3.450e^-4	0.873	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19681266	2R_19681266_SNP [dm3] 2R_23793743_SNP [dm6]	G	A	3.454e^-4	0.873	INTRON CG9850
X	4522297	X_4522297_SNP [dm3] X_4628264_SNP [dm6]	G	A	3.457e^-4	0.873	SYNONYMOUS_CODING CG12184	TF binding site mE1_TFBS_sens
2L	3968828	2L_3968828_SNP [dm3] 2L_3968828_SNP [dm6]	A	G	3.459e^-4	0.873	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	1399226	3L_1399226_SNP [dm3] 3L_1399226_SNP [dm6]	T	C	3.463e^-4	0.873	SYNONYMOUS_CODING CG32320 DOWNSTREAM tRNA:E4:62Ac & 1 other INTRON Ptp61F	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11304797	3L_11304797_SNP [dm3] 3L_11311697_SNP [dm6]	T	A	3.466e^-4	0.873	UPSTREAM CG7573 INTERGENIC
2R	8306128	2R_8306128_SNP [dm3] 2R_12418623_SNP [dm6]	G	T	3.470e^-4	0.873	DOWNSTREAM CG42782 & 1 other INTERGENIC
3R	3542035	3R_3542035_SNP [dm3] 3R_7716313_SNP [dm6]	A	T	3.478e^-4	0.873	INTERGENIC
2L	8351528	2L_8351528_SNP [dm3] 2L_8351528_SNP [dm6]	A	T	3.480e^-4	0.873	UPSTREAM Mur29B DOWNSTREAM CG7778 INTERGENIC
3L	7854614	3L_7854614_SNP [dm3] 3L_7861514_SNP [dm6]	A	G	3.483e^-4	0.873	INTRON Pdp1
3R	10396959	3R_10396959_SNP [dm3] 3R_14571237_SNP [dm6]	T	A	3.484e^-4	0.873	SYNONYMOUS_CODING CG7987	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12842005	3R_12842005_SNP [dm3] 3R_17016283_SNP [dm6]	G	A	3.486e^-4	0.873	UPSTREAM Pxd INTRON Pxd	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8357364	3R_8357364_SNP [dm3] 3R_12531642_SNP [dm6]	T	A	3.504e^-4	0.873	INTRON Octbeta3R
2R	12970276	2R_12970276_SNP [dm3] 2R_17082771_SNP [dm6]	C	A	3.506e^-4	0.873	INTRON CG30460
3L	16962868	3L_16962868_SNP [dm3] 3L_16969768_SNP [dm6]	A	C	3.519e^-4	0.873	UPSTREAM Exn INTERGENIC
X	712187	X_712187_DEL [dm3] X_818154_DEL [dm6]	TT	T	3.522e^-4	0.873	INTRON CG43867
2L	13883304	2L_13883304_SNP [dm3] 2L_13883304_SNP [dm6]	A	T	3.530e^-4	0.873	INTRON CenG1A
3R	26866422	3R_26866422_SNP [dm3] 3R_31040700_SNP [dm6]	A	T	3.534e^-4	0.873	INTRON CanA1
3R	24923615	3R_24923615_SNP [dm3] 3R_29097893_SNP [dm6]	C	G	3.538e^-4	0.873	INTRON CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11875261	3L_11875261_SNP [dm3] 3L_11882161_SNP [dm6]	T	C	3.543e^-4	0.873	SYNONYMOUS_CODING CCDC151 DOWNSTREAM CG14128 INTRON CG44837
2L	15743867	2L_15743867_SNP [dm3] 2L_15743867_SNP [dm6]	G	A	3.544e^-4	0.873	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	869891	3L_869891_SNP [dm3] 3L_869891_SNP [dm6]	A	G	3.548e^-4	0.873	INTRON CG12502	TF binding site mE1_TFBS_chinmo
2L	3736283	2L_3736283_SNP [dm3] 2L_3736283_SNP [dm6]	T	C	3.549e^-4	0.873	INTRON CG10019
2L	4497085	2L_4497085_SNP [dm3] 2L_4497085_SNP [dm6]	C	A	3.550e^-4	0.873	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4559253	X_4559253_SNP [dm3] X_4665220_SNP [dm6]	C	A	3.550e^-4	0.873	INTRON CG3009
2L	8342257	2L_8342257_SNP [dm3] 2L_8342257_SNP [dm6]	G	C	3.551e^-4	0.873	UPSTREAM CG14273 DOWNSTREAM CG14274 INTERGENIC
3L	14983894	3L_14983894_SNP [dm3] 3L_14990794_SNP [dm6]	A	T	3.552e^-4	0.873	INTRON mnd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	16060756	2L_16060756_SNP [dm3] 2L_16060756_SNP [dm6]	T	C	3.552e^-4	0.873	INTRON beat-Ia
2L	7491260	2L_7491260_SNP [dm3] 2L_7491260_SNP [dm6]	G	A	3.556e^-4	0.873	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA
X	15385755	X_15385755_SNP [dm3] X_15491722_SNP [dm6]	A	G	3.556e^-4	0.873	INTRON Gmap	TF binding site BDTNP1_TFBS_dl
2R	1930744	2R_1930744_SNP [dm3] 2R_6043239_SNP [dm6]	G	T	3.557e^-4	0.873	SYNONYMOUS_CODING Tbce	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10608038	3L_10608038_SNP [dm3] 3L_10614938_SNP [dm6]	T	C	3.567e^-4	0.873	INTERGENIC
X	2179563	X_2179563_INS [dm3] X_2285530_INS [dm6]	G	GTGGGGAGGGG...	3.572e^-4	0.873	INTRON CG2865	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	14297630	X_14297630_SNP [dm3] X_14403597_SNP [dm6]	T	G	3.579e^-4	0.873	INTRON dpr8
2L	3968736	2L_3968736_SNP [dm3] 2L_3968736_SNP [dm6]	C	A	3.579e^-4	0.873	INTRON fred	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	6332433	2R_6332433_MNP [dm3] 2R_10444928_MNP [dm6]	TTAA	CATT	3.598e^-4	0.873	UPSTREAM Galphao INTRON Galphao	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6332438	2R_6332438_DEL [dm3] 2R_10444933_DEL [dm6]	GAAAACCA	T	3.598e^-4	0.873	UPSTREAM Galphao INTRON Galphao	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	20627423	3L_20627423_SNP [dm3] 3L_20634323_SNP [dm6]	C	T	3.604e^-4	0.873	DOWNSTREAM CR44681 EXON CR44682	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	11751395	3R_11751395_SNP [dm3] 3R_15925673_SNP [dm6]	A	G	3.605e^-4	0.873	UPSTREAM CG34276 INTRON CG4221 & 1 other
X	20316266	X_20316266_SNP [dm3] X_20445239_SNP [dm6]	A	G	3.629e^-4	0.873	UTR_3_PRIME CG1695	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10767114	3L_10767114_DEL [dm3] 3L_10774014_DEL [dm6]	GTT	G	3.637e^-4	0.873	DOWNSTREAM CG43245 INTERGENIC
2R	6616824	2R_6616824_SNP [dm3] 2R_10729319_SNP [dm6]	C	G	3.641e^-4	0.873	UPSTREAM Rab3 DOWNSTREAM CG12338 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26357983	3R_26357983_SNP [dm3] 3R_30532261_SNP [dm6]	G	A	3.641e^-4	0.873	UPSTREAM tmod & 1 other EXON CR45553	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13304131	3L_13304131_SNP [dm3] 3L_13311031_SNP [dm6]	C	T	3.653e^-4	0.873	INTERGENIC
2L	4683311	2L_4683311_SNP [dm3] 2L_4683311_SNP [dm6]	A	C	3.667e^-4	0.873	SYNONYMOUS_CODING Bsg25A INTRON CG11929	TF binding site BDTNP1_TFBS_dl
3R	5408269	3R_5408269_SNP [dm3] 3R_9582547_SNP [dm6]	C	T	3.669e^-4	0.873	NON_SYNONYMOUS_CODING CG33654 INTRON CG8301
2R	11886430	2R_11886430_DEL [dm3] 2R_15998925_DEL [dm6]	ACTAAGACTAAGTATAG...	A	3.681e^-4	0.873	INTRON ATPCL
2R	2403787	2R_2403787_SNP [dm3] 2R_6516282_SNP [dm6]	C	A	3.689e^-4	0.873	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	6283691	3R_6283691_SNP [dm3] 3R_10457969_SNP [dm6]	T	A	3.693e^-4	0.873	INTERGENIC
2L	8481104	2L_8481104_SNP [dm3] 2L_8481104_SNP [dm6]	T	G	3.701e^-4	0.873	UPSTREAM tRNA:CR31896 DOWNSTREAM tRNA:CR31892 INTRON d
X	19084008	X_19084008_SNP [dm3] X_19189975_SNP [dm6]	C	T	3.710e^-4	0.873	SYNONYMOUS_CODING Mec2 UPSTREAM HP1D3csd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	4349775	2L_4349775_SNP [dm3] 2L_4349775_SNP [dm6]	C	T	3.713e^-4	0.873	DOWNSTREAM CR44699 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20227470	2L_20227470_SNP [dm3] 2L_20227470_SNP [dm6]	A	G	3.715e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	17544589	2L_17544589_SNP [dm3] 2L_17544589_SNP [dm6]	C	A	3.715e^-4	0.873	INTERGENIC
X	18619644	X_18619644_SNP [dm3] X_18725611_SNP [dm6]	A	C	3.719e^-4	0.873	UTR_5_PRIME CG42302 INTRON CCKLR-17D1
2R	19091933	2R_19091933_SNP [dm3] 2R_23204410_SNP [dm6]	G	T	3.720e^-4	0.873	UPSTREAM CG34371 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	3615091	2R_3615091_SNP [dm3] 2R_7727586_SNP [dm6]	G	T	3.721e^-4	0.873	UPSTREAM CG18812 INTRON CG18812
X	12352111	X_12352111_SNP [dm3] X_12458078_SNP [dm6]	T	A	3.724e^-4	0.873	UPSTREAM CG15731 INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	6316709	3R_6316709_SNP [dm3] 3R_10490987_SNP [dm6]	G	A	3.731e^-4	0.873	UPSTREAM CR45576 INTERGENIC	TF binding site mE1_TFBS_HSA
X	19539525	X_19539525_SNP [dm3] X_19645492_SNP [dm6]	C	T	3.731e^-4	0.873	SYNONYMOUS_CODING Arp10 DOWNSTREAM Sec61gamma & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9814539	2L_9814539_SNP [dm3] 2L_9814539_SNP [dm6]	C	A	3.737e^-4	0.873	INTRON nAChRalpha6
X	9055989	X_9055989_SNP [dm3] X_9161956_SNP [dm6]	G	C	3.746e^-4	0.873	NON_SYNONYMOUS_CODING Zpr1 UPSTREAM CG44532	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1445337	3L_1445337_SNP [dm3] 3L_1445337_SNP [dm6]	C	A	3.756e^-4	0.873	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	10058691	3R_10058691_SNP [dm3] 3R_14232969_SNP [dm6]	T	G	3.763e^-4	0.873	INTERGENIC
X	18616634	X_18616634_SNP [dm3] X_18722601_SNP [dm6]	A	T	3.765e^-4	0.873	INTRON CCKLR-17D1
3R	11974804	3R_11974804_SNP [dm3] 3R_16149082_SNP [dm6]	C	A	3.766e^-4	0.873	UTR_3_PRIME CG5916 DOWNSTREAM Fer2	TF binding site mE1_TFBS_cad
X	4916119	X_4916119_INS [dm3] X_5022086_INS [dm6]	A	AAAGTT	3.779e^-4	0.873	INTRON CR44833	regulatory region REDfly_CRMs
2R	14567599	2R_14567599_SNP [dm3] 2R_18680094_SNP [dm6]	A	T	3.784e^-4	0.873	INTRON CG44434 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
2L	5904358	2L_5904358_SNP [dm3] 2L_5904358_SNP [dm6]	C	T	3.792e^-4	0.873	NON_SYNONYMOUS_CODING CG9021 DOWNSTREAM CR43808	TF binding site mE1_TFBS_HSA
2R	11740537	2R_11740537_SNP [dm3] 2R_15853032_SNP [dm6]	G	A	3.800e^-4	0.873	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12650136	3R_12650136_INS [dm3] 3R_16824414_INS [dm6]	G	GT	3.806e^-4	0.873	INTRON abd-A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	11687848	2L_11687848_SNP [dm3] 2L_11687848_SNP [dm6]	A	G	3.808e^-4	0.873	INTERGENIC
2L	13098829	2L_13098829_SNP [dm3] 2L_13098829_SNP [dm6]	C	G	3.809e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	4871961	3R_4871961_SNP [dm3] 3R_9046239_SNP [dm6]	G	T	3.814e^-4	0.873	INTRON Nmdmc & 1 other
2R	2393672	2R_2393672_SNP [dm3] 2R_6506167_SNP [dm6]	G	A	3.817e^-4	0.873	INTRON jing	TF binding site BDTNP1_TFBS_twi
X	4337291	X_4337291_INS [dm3] X_4443258_INS [dm6]	T	TCTT	3.817e^-4	0.873	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs
2L	14635546	2L_14635546_SNP [dm3] 2L_14635546_SNP [dm6]	G	T	3.822e^-4	0.873	INTRON osp
2L	9080281	2L_9080281_SNP [dm3] 2L_9080281_SNP [dm6]	T	A	3.834e^-4	0.873	INTERGENIC
2R	6599846	2R_6599846_SNP [dm3] 2R_10712341_SNP [dm6]	C	T	3.836e^-4	0.873	SYNONYMOUS_CODING stan	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	6309963	2R_6309963_SNP [dm3] 2R_10422458_SNP [dm6]	C	G	3.836e^-4	0.873	NON_SYNONYMOUS_CODING CG33474 UPSTREAM CG11825 INTRON CG11825	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
X	18618219	X_18618219_SNP [dm3] X_18724186_SNP [dm6]	T	G	3.843e^-4	0.873	DOWNSTREAM CG42302 INTRON CCKLR-17D1	TF binding site mE1_TFBS_chinmo
2L	16019935	2L_16019935_SNP [dm3] 2L_16019935_SNP [dm6]	G	A	3.844e^-4	0.873	INTRON beat-Ic
3R	27018141	3R_27018141_SNP [dm3] 3R_31192419_SNP [dm6]	C	T	3.845e^-4	0.873	UPSTREAM bnk INTRON mesh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	11816729	3R_11816729_SNP [dm3] 3R_15991007_SNP [dm6]	C	A	3.853e^-4	0.873	INTRON srp & 1 other	TF binding site mE1_TFBS_cad
3L	10512478	3L_10512478_SNP [dm3] 3L_10519378_SNP [dm6]	C	A	3.856e^-4	0.873	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26347567	3R_26347567_SNP [dm3] 3R_30521845_SNP [dm6]	A	G	3.856e^-4	0.873	INTRON jdp
3L	10510332	3L_10510332_DEL [dm3] 3L_10517232_DEL [dm6]	CATTGC	C	3.859e^-4	0.873	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	11741984	2R_11741984_SNP [dm3] 2R_15854479_SNP [dm6]	T	A	3.859e^-4	0.873	UTR_3_PRIME tun DOWNSTREAM tun
2R	13335373	2R_13335373_INS [dm3] 2R_17447868_INS [dm6]	T	TTAGA	3.862e^-4	0.873	UPSTREAM mthl4 DOWNSTREAM mthl3 INTERGENIC
2R	10527883	2R_10527883_SNP [dm3] 2R_14640378_SNP [dm6]	A	G	3.863e^-4	0.873	NON_SYNONYMOUS_CODING CG12862 DOWNSTREAM CG42715	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20473200	X_20473200_SNP [dm3] X_20602173_SNP [dm6]	G	A	3.864e^-4	0.873	INTRON RunxA
X	14661370	X_14661370_SNP [dm3] X_14767337_SNP [dm6]	A	T	3.869e^-4	0.873	INTERGENIC
2L	6987547	2L_6987547_SNP [dm3] 2L_6987547_SNP [dm6]	T	A	3.870e^-4	0.873	DOWNSTREAM CR44326 INTRON uif
X	14250422	X_14250422_SNP [dm3] X_14356389_SNP [dm6]	A	G	3.871e^-4	0.873	INTRON dpr8
X	14321398	X_14321398_SNP [dm3] X_14427365_SNP [dm6]	A	G	3.872e^-4	0.873	INTRON dpr8
3L	6513229	3L_6513229_INS [dm3] 3L_6520129_INS [dm6]	T	TA	3.873e^-4	0.873	INTRON sfl
3R	11636392	3R_11636392_SNP [dm3] 3R_15810670_SNP [dm6]	T	C	3.874e^-4	0.873	UTR_5_PRIME alpha-Man-IIb DOWNSTREAM CR45211 INTRON alpha-Man-IIb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17937071	X_17937071_SNP [dm3] X_18043038_SNP [dm6]	C	A	3.877e^-4	0.873	INTRON Sh
X	6424873	X_6424873_MNP [dm3] X_6530840_MNP [dm6]	TTC	GAT	3.880e^-4	0.873	DOWNSTREAM RpL7A & 2 others INTERGENIC
2R	10232982	2R_10232982_SNP [dm3] 2R_14345477_SNP [dm6]	G	T	3.882e^-4	0.873	INTRON Shroom
2L	4462853	2L_4462853_SNP [dm3] 2L_4462853_SNP [dm6]	C	T	3.891e^-4	0.873	SYNONYMOUS_CODING CG15443 UPSTREAM CG15436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19389695	X_19389695_SNP [dm3] X_19495662_SNP [dm6]	G	C	3.898e^-4	0.873	UTR_5_PRIME CG14200 UPSTREAM ksh INTRON Pfrx EXON CR44340	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3L	5607993	3L_5607993_SNP [dm3] 3L_5614893_SNP [dm6]	G	C	3.904e^-4	0.873	INTERGENIC
3L	13484819	3L_13484819_SNP [dm3] 3L_13491719_SNP [dm6]	C	T	3.911e^-4	0.873	INTRON Tgi
2R	9071256	2R_9071256_SNP [dm3] 2R_13183751_SNP [dm6]	G	C	3.914e^-4	0.873	INTRON CG17724 & 2 others	TF binding site mE1_TFBS_run
2L	10082129	2L_10082129_SNP [dm3] 2L_10082129_SNP [dm6]	A	T	3.915e^-4	0.873	INTRON CG44153	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10037587	3R_10037587_SNP [dm3] 3R_14211865_SNP [dm6]	C	A	3.932e^-4	0.873	INTRON Dop1R1
3R	27048397	3R_27048397_SNP [dm3] 3R_31222675_SNP [dm6]	C	G	3.939e^-4	0.873	INTRON CG12054	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	18619677	X_18619677_SNP [dm3] X_18725644_SNP [dm6]	A	T	3.944e^-4	0.873	UTR_5_PRIME CG42302 INTRON CCKLR-17D1	TF binding site mE1_TFBS_inv
2R	13529993	2R_13529993_INS [dm3] 2R_17642488_INS [dm6]	C	CT	3.949e^-4	0.873	INTERGENIC
2R	4865731	2R_4865731_SNP [dm3] 2R_8978226_SNP [dm6]	A	C	3.953e^-4	0.873	INTRON CG8213	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	4104942	X_4104942_SNP [dm3] X_4210909_SNP [dm6]	A	T	3.956e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3097270	2R_3097270_SNP [dm3] 2R_7209765_SNP [dm6]	A	T	3.957e^-4	0.873	INTRON pk
3R	26110397	3R_26110397_SNP [dm3] 3R_30284675_SNP [dm6]	A	G	3.958e^-4	0.873	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2L	16060769	2L_16060769_SNP [dm3] 2L_16060769_SNP [dm6]	A	T	3.960e^-4	0.873	INTRON beat-Ia
X	17937335	X_17937335_SNP [dm3] X_18043302_SNP [dm6]	A	C	3.967e^-4	0.873	UPSTREAM CG15373 INTRON Sh
2L	7699420	2L_7699420_MNP [dm3] 2L_7699420_MNP [dm6]	TGG	CAT	3.971e^-4	0.873	NON_SYNONYMOUS_CODING Tep2	TF binding site mE1_TFBS_sens
3L	12414350	3L_12414350_SNP [dm3] 3L_12421250_SNP [dm6]	C	T	3.972e^-4	0.873	INTERGENIC
3L	12414379	3L_12414379_SNP [dm3] 3L_12421279_SNP [dm6]	T	G	3.972e^-4	0.873	INTERGENIC
2L	11687850	2L_11687850_SNP [dm3] 2L_11687850_SNP [dm6]	G	C	3.977e^-4	0.873	INTERGENIC
3R	10834809	3R_10834809_SNP [dm3] 3R_15009087_SNP [dm6]	A	T	3.977e^-4	0.873	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26115580	3R_26115580_SNP [dm3] 3R_30289858_SNP [dm6]	T	C	3.990e^-4	0.873	INTRON hdc
3R	26115582	3R_26115582_SNP [dm3] 3R_30289860_SNP [dm6]	A	G	3.990e^-4	0.873	INTRON hdc
2R	15272429	2R_15272429_SNP [dm3] 2R_19384924_SNP [dm6]	T	A	3.991e^-4	0.873	UTR_3_PRIME CG10073 UPSTREAM CG10081
2L	7314043	2L_7314043_SNP [dm3] 2L_7314043_SNP [dm6]	A	C	4.003e^-4	0.874	INTRON wg	TF binding site mE1_TFBS_cad
3L	4547655	3L_4547655_SNP [dm3] 3L_4547655_SNP [dm6]	A	G	4.011e^-4	0.874	INTRON CG11357	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6813778	X_6813778_SNP [dm3] X_6919745_SNP [dm6]	C	A	4.020e^-4	0.874	INTRON CG14431
X	6813830	X_6813830_SNP [dm3] X_6919797_SNP [dm6]	T	C	4.020e^-4	0.874	INTRON CG14431
X	4105014	X_4105014_SNP [dm3] X_4210981_SNP [dm6]	G	T	4.021e^-4	0.874	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18762524	3R_18762524_SNP [dm3] 3R_22936802_SNP [dm6]	G	A	4.030e^-4	0.874	INTRON klg
3L	10508985	3L_10508985_SNP [dm3] 3L_10515885_SNP [dm6]	A	C	4.030e^-4	0.874	UPSTREAM A2bp1 INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	14638560	3R_14638560_SNP [dm3] 3R_18812838_SNP [dm6]	G	A	4.033e^-4	0.874	INTRON CG18208
X	18619696	X_18619696_SNP [dm3] X_18725663_SNP [dm6]	A	G	4.037e^-4	0.874	UTR_5_PRIME CG42302 INTRON CCKLR-17D1	TF binding site mE1_TFBS_inv
X	11534543	X_11534543_SNP [dm3] X_11640510_SNP [dm6]	C	A	4.045e^-4	0.875	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl
2R	5477352	2R_5477352_SNP [dm3] 2R_9589847_SNP [dm6]	T	C	4.056e^-4	0.875	SYNONYMOUS_CODING CG1827 INTRON clos	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	4677479	3R_4677479_SNP [dm3] 3R_8851757_SNP [dm6]	T	A	4.059e^-4	0.875	INTRON pyd
3R	6195249	3R_6195249_SNP [dm3] 3R_10369527_SNP [dm6]	G	T	4.068e^-4	0.875	INTRON Rfx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	12644199	3R_12644199_SNP [dm3] 3R_16818477_SNP [dm6]	C	G	4.069e^-4	0.875	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11845452	X_11845452_SNP [dm3] X_11951419_SNP [dm6]	C	T	4.072e^-4	0.875	INTRON cac
3L	1489225	3L_1489225_SNP [dm3] 3L_1489225_SNP [dm6]	A	T	4.072e^-4	0.875	DOWNSTREAM CR43701 & 1 other INTRON stet	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14271975	3L_14271975_SNP [dm3] 3L_14278875_SNP [dm6]	A	G	4.088e^-4	0.877	INTRON fz	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5739850	3R_5739850_SNP [dm3] 3R_9914128_SNP [dm6]	G	T	4.097e^-4	0.878	INTRON Glut4EF
3R	20968155	3R_20968155_SNP [dm3] 3R_25142433_SNP [dm6]	T	A	4.121e^-4	0.881	INTERGENIC	TF binding site mE1_TFBS_cad
3R	7596856	3R_7596856_SNP [dm3] 3R_11771134_SNP [dm6]	C	A	4.123e^-4	0.881	INTRON l_3_neo38	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	14788637	X_14788637_DEL [dm3] X_14894604_DEL [dm6]	CTCAAGC	C	4.131e^-4	0.881	INTRON Flo2 & 1 other
2R	12585957	2R_12585957_DEL [dm3] 2R_16698452_DEL [dm6]	AA	A	4.133e^-4	0.881	INTRON CG30463
3R	12643450	3R_12643450_SNP [dm3] 3R_16817728_SNP [dm6]	A	G	4.140e^-4	0.881	INTRON abd-A	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9080319	2L_9080319_SNP [dm3] 2L_9080319_SNP [dm6]	C	G	4.141e^-4	0.881	INTERGENIC
3L	13286654	3L_13286654_SNP [dm3] 3L_13293554_SNP [dm6]	C	T	4.145e^-4	0.881	INTERGENIC
2L	10164565	2L_10164565_INS [dm3] 2L_10164565_INS [dm6]	G	GG	4.153e^-4	0.881	INTRON CG44153
X	6551008	X_6551008_SNP [dm3] X_6656975_SNP [dm6]	G	A	4.161e^-4	0.881	INTRON l_1_G0148	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12352328	X_12352328_SNP [dm3] X_12458295_SNP [dm6]	A	C	4.163e^-4	0.881	UPSTREAM CG15731 INTERGENIC
X	20316229	X_20316229_SNP [dm3] X_20445202_SNP [dm6]	A	T	4.169e^-4	0.881	UTR_3_PRIME CG1695	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	2352081	2R_2352081_SNP [dm3] 2R_6464576_SNP [dm6]	G	C	4.172e^-4	0.881	INTERGENIC	transposable element FlyBase
2L	6116297	2L_6116297_SNP [dm3] 2L_6116297_SNP [dm6]	A	T	4.181e^-4	0.881	INTRON stai
2L	7519288	2L_7519288_SNP [dm3] 2L_7519288_SNP [dm6]	T	A	4.183e^-4	0.881	UPSTREAM CR44082 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	1717566	X_1717566_INS [dm3] X_1823533_INS [dm6]	A	AA	4.184e^-4	0.881	UPSTREAM CG42666 INTRON CG42666	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5472230	2R_5472230_SNP [dm3] 2R_9584725_SNP [dm6]	A	G	4.204e^-4	0.881	UTR_5_PRIME Updo UPSTREAM CG1868	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1322591	X_1322591_SNP [dm3] X_1428558_SNP [dm6]	G	A	4.209e^-4	0.881	INTRON futsch
3L	9320575	3L_9320575_SNP [dm3] 3L_9327475_SNP [dm6]	C	T	4.214e^-4	0.881	INTERGENIC
X	15995063	X_15995063_SNP [dm3] X_16101030_SNP [dm6]	G	A	4.215e^-4	0.881	INTRON CG42354 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3968723	2L_3968723_SNP [dm3] 2L_3968723_SNP [dm6]	T	A	4.226e^-4	0.881	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	15349984	3R_15349984_SNP [dm3] 3R_19524262_SNP [dm6]	G	A	4.227e^-4	0.881	INTRON Dys
3R	10119648	3R_10119648_SNP [dm3] 3R_14293926_SNP [dm6]	T	A	4.227e^-4	0.881	INTRON CG12207
X	14321399	X_14321399_SNP [dm3] X_14427366_SNP [dm6]	A	G	4.229e^-4	0.881	INTRON dpr8
X	284645	X_284645_SNP [dm3] X_390612_SNP [dm6]	C	G	4.231e^-4	0.881	INTRON CG32816
2R	1944781	2R_1944781_SNP [dm3] 2R_6057276_SNP [dm6]	G	A	4.231e^-4	0.881	DOWNSTREAM CG7856 INTRON CCHa2-R	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24466733	3R_24466733_SNP [dm3] 3R_28641011_SNP [dm6]	C	T	4.232e^-4	0.881	DOWNSTREAM CG14062 INTERGENIC	TF binding site mE1_TFBS_cad
X	1663289	X_1663289_SNP [dm3] X_1769256_SNP [dm6]	C	A	4.236e^-4	0.881	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	20754046	X_20754046_SNP [dm3] X_20883019_SNP [dm6]	T	C	4.276e^-4	0.887	UPSTREAM I-3 INTRON shakB
3R	3543665	3R_3543665_SNP [dm3] 3R_7717943_SNP [dm6]	G	A	4.277e^-4	0.887	INTERGENIC
3L	5925483	3L_5925483_SNP [dm3] 3L_5932383_SNP [dm6]	A	T	4.280e^-4	0.887	DOWNSTREAM CG33993 INTRON Rcc1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	2412367	2R_2412367_SNP [dm3] 2R_6524862_SNP [dm6]	G	C	4.296e^-4	0.887	INTRON jing
2R	9164276	2R_9164276_SNP [dm3] 2R_13276771_SNP [dm6]	A	G	4.298e^-4	0.887	INTRON Dh31-R
2L	12280834	2L_12280834_SNP [dm3] 2L_12280834_SNP [dm6]	T	A	4.301e^-4	0.887	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	12820270	X_12820270_SNP [dm3] X_12926237_SNP [dm6]	T	C	4.303e^-4	0.887	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	764254	3L_764254_SNP [dm3] 3L_764254_SNP [dm6]	T	C	4.319e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	16060887	2L_16060887_SNP [dm3] 2L_16060887_SNP [dm6]	T	C	4.319e^-4	0.887	INTRON beat-Ia
3R	18903224	3R_18903224_SNP [dm3] 3R_23077502_SNP [dm6]	G	A	4.320e^-4	0.887	INTRON CG13830
2L	16023263	2L_16023263_SNP [dm3] 2L_16023263_SNP [dm6]	T	C	4.320e^-4	0.887	INTRON beat-Ic
3L	16139728	3L_16139728_DEL [dm3] 3L_16146628_DEL [dm6]	GCTTTCTATTTG...	G	4.330e^-4	0.887	INTRON CG5151
2L	2622848	2L_2622848_SNP [dm3] 2L_2622848_SNP [dm6]	G	A	4.336e^-4	0.887	INTERGENIC
3R	16788733	3R_16788733_SNP [dm3] 3R_20963011_SNP [dm6]	C	T	4.337e^-4	0.887	INTRON Atpalpha
2L	8481022	2L_8481022_SNP [dm3] 2L_8481022_SNP [dm6]	G	T	4.341e^-4	0.887	UPSTREAM tRNA:CR31896 INTRON d
2L	21064677	2L_21064677_SNP [dm3] 2L_21064677_SNP [dm6]	A	C	4.345e^-4	0.887	INTRON CG9265	TF binding site mE1_TFBS_cnc
3L	5122703	3L_5122703_SNP [dm3] 3L_5129603_SNP [dm6]	A	T	4.348e^-4	0.887	UPSTREAM CG4597 INTERGENIC
X	19541363	X_19541363_SNP [dm3] X_19647330_SNP [dm6]	G	C	4.352e^-4	0.887	UTR_3_PRIME Ranbp21	TF binding site mE1_TFBS_chinmo
X	18618948	X_18618948_SNP [dm3] X_18724915_SNP [dm6]	C	T	4.367e^-4	0.888	UTR_3_PRIME CG42302 INTRON CCKLR-17D1
3L	1397615	3L_1397615_SNP [dm3] 3L_1397615_SNP [dm6]	G	C	4.373e^-4	0.888	UPSTREAM tRNA:E4:62Aa & 4 others INTRON Ptp61F
2L	8003614	2L_8003614_SNP [dm3] 2L_8003614_SNP [dm6]	T	A	4.374e^-4	0.888	SYNONYMOUS_CODING Wwox DOWNSTREAM Spn28Dc
X	17945059	X_17945059_SNP [dm3] X_18051026_SNP [dm6]	A	T	4.377e^-4	0.888	INTRON Sh	TF binding site BDTNP1_TFBS_dl
3L	4220629	3L_4220629_SNP [dm3] 3L_4220629_SNP [dm6]	C	T	4.381e^-4	0.888	INTRON CG43367	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6625498	2L_6625498_SNP [dm3] 2L_6625498_SNP [dm6]	G	A	4.389e^-4	0.889	SYNONYMOUS_CODING Oatp26F DOWNSTREAM CG34345	TF binding site mE1_TFBS_inv
X	11821501	X_11821501_SNP [dm3] X_11927468_SNP [dm6]	T	A	4.398e^-4	0.89	SYNONYMOUS_CODING CG10362
X	16735581	X_16735581_SNP [dm3] X_16841548_SNP [dm6]	A	T	4.415e^-4	0.89	INTRON RSG7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13912557	3R_13912557_SNP [dm3] 3R_18086835_SNP [dm6]	C	G	4.416e^-4	0.89	INTERGENIC
2R	15217116	2R_15217116_SNP [dm3] 2R_19329611_SNP [dm6]	C	T	4.416e^-4	0.89	INTRON Rgk1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	19512034	3L_19512034_SNP [dm3] 3L_19518934_SNP [dm6]	G	T	4.418e^-4	0.89	UPSTREAM Cpr76Ba & 1 other INTERGENIC
3L	10508949	3L_10508949_SNP [dm3] 3L_10515849_SNP [dm6]	T	C	4.431e^-4	0.891	UPSTREAM A2bp1 INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	8357264	3R_8357264_SNP [dm3] 3R_12531542_SNP [dm6]	C	T	4.444e^-4	0.891	INTRON Octbeta3R
X	18893265	X_18893265_SNP [dm3] X_18999232_SNP [dm6]	T	C	4.448e^-4	0.891	INTRON CG43759
X	4677552	X_4677552_SNP [dm3] X_4783519_SNP [dm6]	G	C	4.449e^-4	0.891	UPSTREAM CG15471 & 1 other INTERGENIC
2L	5505670	2L_5505670_SNP [dm3] 2L_5505670_SNP [dm6]	G	A	4.454e^-4	0.891	INTERGENIC
3R	5724815	3R_5724815_SNP [dm3] 3R_9899093_SNP [dm6]	C	A	4.457e^-4	0.891	INTRON Glut4EF
2L	12283022	2L_12283022_SNP [dm3] 2L_12283022_SNP [dm6]	A	T	4.462e^-4	0.891	INTRON aret
X	3097260	X_3097260_SNP [dm3] X_3203227_SNP [dm6]	T	G	4.465e^-4	0.891	INTRON dnc
2R	10528488	2R_10528488_SNP [dm3] 2R_14640983_SNP [dm6]	C	G	4.471e^-4	0.891	UPSTREAM CG12862 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18885219	X_18885219_SNP [dm3] X_18991186_SNP [dm6]	T	A	4.474e^-4	0.891	INTRON CG43759	TF binding site mE1_TFBS_cad
2L	4867677	2L_4867677_SNP [dm3] 2L_4867677_SNP [dm6]	G	A	4.475e^-4	0.891	INTRON pog
3R	15372087	3R_15372087_SNP [dm3] 3R_19546365_SNP [dm6]	T	C	4.487e^-4	0.891	INTRON Dys
X	4104978	X_4104978_SNP [dm3] X_4210945_SNP [dm6]	T	G	4.488e^-4	0.891	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9897092	3L_9897092_SNP [dm3] 3L_9903992_SNP [dm6]	G	T	4.489e^-4	0.891	DOWNSTREAM nudE INTERGENIC
X	12332068	X_12332068_SNP [dm3] X_12438035_SNP [dm6]	C	T	4.500e^-4	0.892	INTRON Pkcdelta
3R	9563201	3R_9563201_SNP [dm3] 3R_13737479_SNP [dm6]	T	C	4.503e^-4	0.892	INTRON CG34383
3L	11320143	3L_11320143_SNP [dm3] 3L_11327043_SNP [dm6]	A	T	4.529e^-4	0.894	INTERGENIC
X	12438864	X_12438864_SNP [dm3] X_12544831_SNP [dm6]	T	A	4.532e^-4	0.894	INTRON CG43921
X	2528349	X_2528349_SNP [dm3] X_2634316_SNP [dm6]	G	A	4.538e^-4	0.894	DOWNSTREAM PI4KIIIalpha INTRON sgg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	2885838	X_2885838_SNP [dm3] X_2991805_SNP [dm6]	G	A	4.538e^-4	0.894	INTRON kirre
2R	14575252	2R_14575252_SNP [dm3] 2R_18687747_SNP [dm6]	T	G	4.543e^-4	0.894	UPSTREAM CG44433 & 1 other INTRON CG42855	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	13247801	3L_13247801_SNP [dm3] 3L_13254701_SNP [dm6]	C	T	4.546e^-4	0.894	INTRON caps
3L	13252493	3L_13252493_SNP [dm3] 3L_13259393_SNP [dm6]	T	C	4.553e^-4	0.894	INTRON caps
3L	10857767	3L_10857767_SNP [dm3] 3L_10864667_SNP [dm6]	C	G	4.556e^-4	0.894	INTRON tna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18232905	3R_18232905_SNP [dm3] 3R_22407183_SNP [dm6]	A	G	4.561e^-4	0.894	SYNONYMOUS_CODING CG13855
2L	3737123	2L_3737123_SNP [dm3] 2L_3737123_SNP [dm6]	G	A	4.571e^-4	0.894	INTRON CG10019
X	3487823	X_3487823_SNP [dm3] X_3593790_SNP [dm6]	A	G	4.585e^-4	0.894	INTRON AstA-R1
2L	15936908	2L_15936908_SNP [dm3] 2L_15936908_SNP [dm6]	T	C	4.588e^-4	0.894	INTRON beat-Ib
3L	1399591	3L_1399591_SNP [dm3] 3L_1399591_SNP [dm6]	C	A	4.595e^-4	0.894	NON_SYNONYMOUS_CODING CG32320 INTRON Ptp61F	TF binding site mE1_TFBS_sens
2R	19451290	2R_19451290_SNP [dm3] 2R_23563767_SNP [dm6]	T	C	4.608e^-4	0.894	SYNONYMOUS_CODING Pi3K59F UPSTREAM CG30184	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10901368	2L_10901368_SNP [dm3] 2L_10901368_SNP [dm6]	A	G	4.611e^-4	0.894	SYNONYMOUS_CODING CG14070
3L	12101826	3L_12101826_SNP [dm3] 3L_12108726_SNP [dm6]	T	A	4.618e^-4	0.894	INTERGENIC
3R	10119599	3R_10119599_INS [dm3] 3R_14293877_INS [dm6]	C	CTGTTACTCTCTAC...	4.621e^-4	0.894	INTRON CG12207
3R	10119602	3R_10119602_SNP [dm3] 3R_14293880_SNP [dm6]	T	A	4.621e^-4	0.894	INTRON CG12207
3R	20465330	3R_20465330_INS [dm3] 3R_24639608_INS [dm6]	A	AAGCAA	4.628e^-4	0.894	DOWNSTREAM puf INTRON puf	TF binding site mE1_TFBS_chinmo
3R	4251442	3R_4251442_INS [dm3] 3R_8425720_INS [dm6]	A	AA	4.639e^-4	0.894	INTRON CG45263
2R	14567623	2R_14567623_SNP [dm3] 2R_18680118_SNP [dm6]	G	A	4.640e^-4	0.894	INTRON CG44434 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
2L	11659725	2L_11659725_SNP [dm3] 2L_11659725_SNP [dm6]	T	A	4.642e^-4	0.894	DOWNSTREAM CR44497 INTERGENIC
3L	11489346	3L_11489346_SNP [dm3] 3L_11496246_SNP [dm6]	T	C	4.643e^-4	0.894	UTR_3_PRIME chrb
3R	20462993	3R_20462993_SNP [dm3] 3R_24637271_SNP [dm6]	A	T	4.672e^-4	0.894	INTRON puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14567591	2R_14567591_SNP [dm3] 2R_18680086_SNP [dm6]	T	C	4.674e^-4	0.894	INTRON CG44434 & 1 other	TF binding site BDTNP1_TFBS_da
2R	7319964	2R_7319964_SNP [dm3] 2R_11432459_SNP [dm6]	G	A	4.686e^-4	0.894	DOWNSTREAM CR43771 INTERGENIC
2L	11252712	2L_11252712_SNP [dm3] 2L_11252712_SNP [dm6]	C	T	4.700e^-4	0.894	INTRON ab	TF binding site BDTNP1_TFBS_twi
2L	7932107	2L_7932107_SNP [dm3] 2L_7932107_SNP [dm6]	A	C	4.704e^-4	0.894	INTRON Snoo
2L	19400313	2L_19400313_SNP [dm3] 2L_19400313_SNP [dm6]	A	C	4.707e^-4	0.894	DOWNSTREAM Pax INTERGENIC
3L	6548054	3L_6548054_SNP [dm3] 3L_6554954_SNP [dm6]	A	G	4.711e^-4	0.894	INTRON CG18769
2R	16633694	2R_16633694_SNP [dm3] 2R_20746189_SNP [dm6]	C	A	4.722e^-4	0.894	INTRON dpr
X	13698843	X_13698843_SNP [dm3] X_13804810_SNP [dm6]	G	T	4.728e^-4	0.894	INTRON inaE	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11021221	3L_11021221_SNP [dm3] 3L_11028121_SNP [dm6]	A	T	4.739e^-4	0.894	SYNONYMOUS_CODING CG32081 DOWNSTREAM CG32079
2R	15762326	2R_15762326_SNP [dm3] 2R_19874821_SNP [dm6]	C	T	4.749e^-4	0.894	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	8645481	2R_8645481_SNP [dm3] 2R_12757976_SNP [dm6]	T	C	4.750e^-4	0.894	SYNONYMOUS_CODING Dgkepsilon UPSTREAM ox DOWNSTREAM mRpL18	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	7596135	2L_7596135_SNP [dm3] 2L_7596135_SNP [dm6]	A	C	4.751e^-4	0.894	INTERGENIC	TF binding site mE1_TFBS_HSA
X	3898636	X_3898636_SNP [dm3] X_4004603_SNP [dm6]	T	G	4.752e^-4	0.894	INTERGENIC
X	719397	X_719397_SNP [dm3] X_825364_SNP [dm6]	G	A	4.752e^-4	0.894	INTRON CG43867	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	13493817	2R_13493817_SNP [dm3] 2R_17606312_SNP [dm6]	A	T	4.752e^-4	0.894	NON_SYNONYMOUS_CODING CG10936
3R	10040721	3R_10040721_SNP [dm3] 3R_14214999_SNP [dm6]	T	A	4.753e^-4	0.894	UPSTREAM Dop1R1 DOWNSTREAM CG9649 INTERGENIC
3L	13308983	3L_13308983_SNP [dm3] 3L_13315883_SNP [dm6]	T	A	4.754e^-4	0.894	INTERGENIC
3R	24711113	3R_24711113_SNP [dm3] 3R_28885391_SNP [dm6]	C	T	4.756e^-4	0.894	SYNONYMOUS_CODING CG14526 INTRON CG33203
3R	22064799	3R_22064799_SNP [dm3] 3R_26239077_SNP [dm6]	T	G	4.765e^-4	0.894	INTRON CR42745
3R	11751460	3R_11751460_SNP [dm3] 3R_15925738_SNP [dm6]	G	A	4.768e^-4	0.894	UTR_5_PRIME CG34276 UPSTREAM CG34276 INTRON CG4221
3R	24459165	3R_24459165_SNP [dm3] 3R_28633443_SNP [dm6]	C	G	4.769e^-4	0.894	INTRON CG10011	TF binding site BDTNP1_TFBS_dl
3R	7022599	3R_7022599_SNP [dm3] 3R_11196877_SNP [dm6]	T	G	4.770e^-4	0.894	UTR_3_PRIME CG18577 UPSTREAM cu
3R	16898224	3R_16898224_SNP [dm3] 3R_21072502_SNP [dm6]	G	C	4.771e^-4	0.894	SYNONYMOUS_CODING r-l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2303996	X_2303996_SNP [dm3] X_2409963_SNP [dm6]	T	G	4.772e^-4	0.894	SYNONYMOUS_CODING CG12496	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	14898352	X_14898352_SNP [dm3] X_15004319_SNP [dm6]	A	T	4.774e^-4	0.894	SYNONYMOUS_CODING eag	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12585274	2R_12585274_SNP [dm3] 2R_16697769_SNP [dm6]	G	A	4.777e^-4	0.894	INTRON CG30463
3R	4293307	3R_4293307_SNP [dm3] 3R_8467585_SNP [dm6]	T	C	4.779e^-4	0.894	INTRON CG45263	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3968814	2L_3968814_SNP [dm3] 2L_3968814_SNP [dm6]	G	T	4.781e^-4	0.894	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	13774276	2R_13774276_SNP [dm3] 2R_17886771_SNP [dm6]	G	T	4.783e^-4	0.894	DOWNSTREAM PPO1 INTRON Elk

Missing results

By genomic position
Variant impact
Gene name

mn_Dev_Time phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results