DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.940e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.02433

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	7.0018	0.0302

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2228 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

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Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	12820358	X_12820358_SNP [dm3] X_12926325_SNP [dm6]	T	A	3.604e^-7	0.663	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	251358	X_251358_SNP [dm3] X_357325_SNP [dm6]	C	A	1.420e^-6	0.663	INTRON CG32816 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	25248525	3R_25248525_SNP [dm3] 3R_29422803_SNP [dm6]	T	G	1.870e^-6	0.663	INTRON Ptp99A
X	11907867	X_11907867_SNP [dm3] X_12013834_SNP [dm6]	T	C	2.253e^-6	0.663	UPSTREAM regucalcin INTRON regucalcin
X	15385853	X_15385853_SNP [dm3] X_15491820_SNP [dm6]	T	A	2.312e^-6	0.663	INTRON Gmap	TF binding site BDTNP1_TFBS_dl
3R	4875604	3R_4875604_SNP [dm3] 3R_9049882_SNP [dm6]	T	A	2.408e^-6	0.663	UPSTREAM Nmdmc & 1 other INTRON Nmdmc & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	11907922	X_11907922_SNP [dm3] X_12013889_SNP [dm6]	A	T	2.645e^-6	0.663	UPSTREAM regucalcin INTRON regucalcin
2R	12572498	2R_12572498_SNP [dm3] 2R_16684993_SNP [dm6]	T	G	2.829e^-6	0.663	UPSTREAM CG30463 INTRON CG30463
2R	18231661	2R_18231661_SNP [dm3] 2R_22344156_SNP [dm6]	C	T	4.523e^-6	0.681	INTRON Liprin-gamma
2R	12396107	2R_12396107_SNP [dm3] 2R_16508602_SNP [dm6]	G	A	4.628e^-6	0.681	INTRON Sema-2a
3R	4874732	3R_4874732_SNP [dm3] 3R_9049010_SNP [dm6]	A	C	4.650e^-6	0.681	UPSTREAM Nmdmc INTRON Nmdmc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	11856023	X_11856023_SNP [dm3] X_11961990_SNP [dm6]	G	A	4.919e^-6	0.681	INTRON cac
2R	18231652	2R_18231652_SNP [dm3] 2R_22344147_SNP [dm6]	T	G	5.001e^-6	0.681	INTRON Liprin-gamma
2L	9922005	2L_9922005_SNP [dm3] 2L_9922005_SNP [dm6]	C	G	5.084e^-6	0.681	DOWNSTREAM CG4594 & 1 other INTRON CG4592	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	25243054	3R_25243054_SNP [dm3] 3R_29417332_SNP [dm6]	A	C	6.103e^-6	0.72	INTRON Ptp99A
2L	8005476	2L_8005476_SNP [dm3] 2L_8005476_SNP [dm6]	A	G	6.262e^-6	0.72	SYNONYMOUS_CODING Spn28Dc	TF binding site mE1_TFBS_cad
3R	4873741	3R_4873741_SNP [dm3] 3R_9048019_SNP [dm6]	C	A	7.553e^-6	0.72	UPSTREAM Rel & 1 other INTRON Nmdmc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
X	16299961	X_16299961_SNP [dm3] X_16405928_SNP [dm6]	C	T	7.616e^-6	0.72	UPSTREAM CG9981 & 1 other INTRON CG4301
X	12352257	X_12352257_SNP [dm3] X_12458224_SNP [dm6]	G	T	7.963e^-6	0.72	UPSTREAM CG15731 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3181781	3L_3181781_SNP [dm3] 3L_3181781_SNP [dm6]	C	T	8.231e^-6	0.72	NON_SYNONYMOUS_CODING Girdin
3R	22160583	3R_22160583_SNP [dm3] 3R_26334861_SNP [dm6]	A	T	8.452e^-6	0.72	INTRON CG33970
2L	12280905	2L_12280905_SNP [dm3] 2L_12280905_SNP [dm6]	A	C	9.512e^-6	0.72	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	15669386	X_15669386_SNP [dm3] X_15775353_SNP [dm6]	C	G	9.849e^-6	0.72	SYNONYMOUS_CODING CG43672
X	15509970	X_15509970_SNP [dm3] X_15615937_SNP [dm6]	G	C	1.005e^-5	0.72	INTRON sog
3L	13308940	3L_13308940_SNP [dm3] 3L_13315840_SNP [dm6]	T	A	1.014e^-5	0.72	INTERGENIC
2R	17398087	2R_17398087_SNP [dm3] 2R_21510582_SNP [dm6]	T	A	1.086e^-5	0.72	INTRON MESK2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12572527	2R_12572527_SNP [dm3] 2R_16685022_SNP [dm6]	G	A	1.119e^-5	0.72	INTRON CG30463
X	15669389	X_15669389_SNP [dm3] X_15775356_SNP [dm6]	G	T	1.201e^-5	0.72	NON_SYNONYMOUS_CODING CG43672
3L	14677420	3L_14677420_DEL [dm3] 3L_14684320_DEL [dm6]	AGCACAGA	A	1.434e^-5	0.72	UPSTREAM CG5048 INTRON ome
X	260204	X_260204_SNP [dm3] X_366171_SNP [dm6]	A	C	1.435e^-5	0.72	INTRON CG32816 & 1 other EXON yar
3R	4677440	3R_4677440_SNP [dm3] 3R_8851718_SNP [dm6]	C	A	1.564e^-5	0.72	INTRON pyd
2L	19814750	2L_19814750_SNP [dm3] 2L_19814750_SNP [dm6]	C	T	1.568e^-5	0.72	UPSTREAM CG13962 DOWNSTREAM snRNA:U2:38ABa INTRON sick	TF binding site mE1_TFBS_inv
X	19777754	X_19777754_DEL [dm3] X_19883721_DEL [dm6]	TT	T	1.571e^-5	0.72	INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	19814825	2L_19814825_SNP [dm3] 2L_19814825_SNP [dm6]	G	A	1.578e^-5	0.72	UPSTREAM CG13962 DOWNSTREAM snRNA:U2:38ABa INTRON sick	TF binding site mE1_TFBS_inv
X	19541196	X_19541196_SNP [dm3] X_19647163_SNP [dm6]	C	T	1.620e^-5	0.72	UTR_3_PRIME Ranbp21 UPSTREAM Arp10
3R	26357057	3R_26357057_DEL [dm3] 3R_30531335_DEL [dm6]	GA	G	1.651e^-5	0.72	INTRON CR45552 EXON CR45553
3R	10119268	3R_10119268_SNP [dm3] 3R_14293546_SNP [dm6]	G	C	1.653e^-5	0.72	INTRON CG12207
X	286036	X_286036_SNP [dm3] X_392003_SNP [dm6]	G	A	1.660e^-5	0.72	INTRON CG32816 EXON CR44753	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	293501	X_293501_SNP [dm3] X_399468_SNP [dm6]	T	C	1.690e^-5	0.72	INTRON CG32816	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7921226	2R_7921226_DEL [dm3] 2R_12033721_DEL [dm6]	AA	A	1.844e^-5	0.72	UTR_3_PRIME pds5 UPSTREAM CG8321	TF binding site BDTNP1_TFBS_dl
X	248402	X_248402_SNP [dm3] X_354369_SNP [dm6]	T	G	1.856e^-5	0.72	INTRON CG32816	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_cad
X	17730093	X_17730093_SNP [dm3] X_17836060_SNP [dm6]	T	A	1.923e^-5	0.72	INTRON CG6398
X	19730482	X_19730482_SNP [dm3] X_19836449_SNP [dm6]	C	T	1.934e^-5	0.72	SYNONYMOUS_CODING pico	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4873990	3R_4873990_SNP [dm3] 3R_9048268_SNP [dm6]	G	A	1.935e^-5	0.72	UPSTREAM Rel & 1 other INTRON Nmdmc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12332607	X_12332607_SNP [dm3] X_12438574_SNP [dm6]	C	T	1.948e^-5	0.72	INTRON Pkcdelta
X	264409	X_264409_SNP [dm3] X_370376_SNP [dm6]	C	T	1.972e^-5	0.72	NON_SYNONYMOUS_CODING ac INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13952962	2R_13952962_SNP [dm3] 2R_18065457_SNP [dm6]	T	A	1.981e^-5	0.72	INTRON CG34386
X	12610472	X_12610472_SNP [dm3] X_12716439_SNP [dm6]	C	T	2.122e^-5	0.72	INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26812104	3R_26812104_SNP [dm3] 3R_30986382_SNP [dm6]	T	C	2.179e^-5	0.72	INTRON 5-HT7
X	18616629	X_18616629_SNP [dm3] X_18722596_SNP [dm6]	G	A	2.214e^-5	0.72	INTRON CCKLR-17D1
2L	7108648	2L_7108648_SNP [dm3] 2L_7108648_SNP [dm6]	T	G	2.304e^-5	0.72	INTRON Pvf3
3L	13247839	3L_13247839_SNP [dm3] 3L_13254739_SNP [dm6]	G	C	2.331e^-5	0.72	INTRON caps
3L	16694836	3L_16694836_INS [dm3] 3L_16701736_INS [dm6]	A	AGCTCA	2.333e^-5	0.72	INTRON Lasp & 1 other
3L	9160188	3L_9160188_SNP [dm3] 3L_9167088_SNP [dm6]	T	C	2.361e^-5	0.72	INTRON Rdl
X	275273	X_275273_SNP [dm3] X_381240_SNP [dm6]	C	T	2.424e^-5	0.72	INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19814858	2L_19814858_SNP [dm3] 2L_19814858_SNP [dm6]	G	A	2.476e^-5	0.72	UPSTREAM CG13962 DOWNSTREAM snRNA:U2:38ABa INTRON sick	TF binding site mE1_TFBS_inv
3R	22160768	3R_22160768_SNP [dm3] 3R_26335046_SNP [dm6]	G	A	2.495e^-5	0.72	INTRON CG33970
X	276268	X_276268_SNP [dm3] X_382235_SNP [dm6]	A	G	2.498e^-5	0.72	INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4251921	3R_4251921_SNP [dm3] 3R_8426199_SNP [dm6]	T	A	2.523e^-5	0.72	INTRON CG45263
X	3898495	X_3898495_SNP [dm3] X_4004462_SNP [dm6]	A	G	2.541e^-5	0.72	INTERGENIC
3L	3182283	3L_3182283_SNP [dm3] 3L_3182283_SNP [dm6]	A	C	2.565e^-5	0.72	SYNONYMOUS_CODING Girdin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3181383	3L_3181383_SNP [dm3] 3L_3181383_SNP [dm6]	C	A	2.594e^-5	0.72	SYNONYMOUS_CODING Girdin
X	280398	X_280398_SNP [dm3] X_386365_SNP [dm6]	T	G	2.757e^-5	0.72	DOWNSTREAM CR44752 INTRON CG32816
3L	2296432	3L_2296432_SNP [dm3] 3L_2296432_SNP [dm6]	A	T	2.769e^-5	0.72	INTRON MsR2
3L	2296433	3L_2296433_SNP [dm3] 3L_2296433_SNP [dm6]	G	A	2.769e^-5	0.72	INTRON MsR2
X	18893116	X_18893116_SNP [dm3] X_18999083_SNP [dm6]	T	C	2.774e^-5	0.72	INTRON CG43759
X	18796928	X_18796928_SNP [dm3] X_18902895_SNP [dm6]	A	G	2.834e^-5	0.72	INTRON CG7378
X	18880559	X_18880559_DEL [dm3] X_18986526_DEL [dm6]	GG	G	2.834e^-5	0.72	INTRON CG43759	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24461437	3R_24461437_SNP [dm3] 3R_28635715_SNP [dm6]	A	G	2.849e^-5	0.72	UPSTREAM CG10011 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
X	19540031	X_19540031_SNP [dm3] X_19645998_SNP [dm6]	T	A	2.920e^-5	0.72	UTR_5_PRIME Arp10 DOWNSTREAM Ranbp21	TF binding site mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
3R	10837533	3R_10837533_SNP [dm3] 3R_15011811_SNP [dm6]	C	G	2.980e^-5	0.72	INTERGENIC
3R	13945090	3R_13945090_SNP [dm3] 3R_18119368_SNP [dm6]	C	T	3.009e^-5	0.72	INTRON sr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	20329653	3R_20329653_SNP [dm3] 3R_24503931_SNP [dm6]	C	T	3.015e^-5	0.72	INTERGENIC
3R	14167923	3R_14167923_SNP [dm3] 3R_18342201_SNP [dm6]	T	G	3.042e^-5	0.72	INTRON CG15803
3R	22160664	3R_22160664_SNP [dm3] 3R_26334942_SNP [dm6]	G	T	3.099e^-5	0.72	INTRON CG33970
X	16735488	X_16735488_DEL [dm3] X_16841455_DEL [dm6]	AATAATCAAAGCGCATTTAA...	G	3.122e^-5	0.72	INTRON RSG7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15385824	X_15385824_SNP [dm3] X_15491791_SNP [dm6]	A	G	3.151e^-5	0.72	INTRON Gmap	TF binding site BDTNP1_TFBS_dl
2L	5838672	2L_5838672_SNP [dm3] 2L_5838672_SNP [dm6]	A	T	3.160e^-5	0.72	INTRON TrissinR
X	14292594	X_14292594_INS [dm3] X_14398561_INS [dm6]	T	TT	3.200e^-5	0.72	INTRON dpr8
3R	15100098	3R_15100098_SNP [dm3] 3R_19274376_SNP [dm6]	A	C	3.206e^-5	0.72	INTERGENIC
X	12331979	X_12331979_SNP [dm3] X_12437946_SNP [dm6]	A	T	3.265e^-5	0.72	INTRON Pkcdelta
3L	869893	3L_869893_SNP [dm3] 3L_869893_SNP [dm6]	T	A	3.476e^-5	0.72	INTRON CG12502	TF binding site mE1_TFBS_chinmo
3R	12919228	3R_12919228_SNP [dm3] 3R_17093506_SNP [dm6]	A	G	3.477e^-5	0.72	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	242138	X_242138_SNP [dm3] X_348105_SNP [dm6]	A	T	3.508e^-5	0.72	SYNONYMOUS_CODING CG3777 INTRON CG32816
X	2892957	X_2892957_SNP [dm3] X_2998924_SNP [dm6]	G	T	3.529e^-5	0.72	INTRON kirre
X	12352306	X_12352306_SNP [dm3] X_12458273_SNP [dm6]	G	A	3.544e^-5	0.72	UPSTREAM CG15731 INTERGENIC
X	15385770	X_15385770_SNP [dm3] X_15491737_SNP [dm6]	A	T	3.567e^-5	0.72	INTRON Gmap	TF binding site BDTNP1_TFBS_dl
X	12610642	X_12610642_SNP [dm3] X_12716609_SNP [dm6]	A	T	3.612e^-5	0.72	INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6175527	2L_6175527_SNP [dm3] 2L_6175527_SNP [dm6]	A	C	3.638e^-5	0.72	INTERGENIC
X	12820264	X_12820264_SNP [dm3] X_12926231_SNP [dm6]	G	T	3.672e^-5	0.72	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	12585785	2R_12585785_SNP [dm3] 2R_16698280_SNP [dm6]	T	G	3.677e^-5	0.72	INTRON CG30463
X	18291043	X_18291043_SNP [dm3] X_18397010_SNP [dm6]	C	A	3.735e^-5	0.72	INTRON CG32549	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22160753	3R_22160753_SNP [dm3] 3R_26335031_SNP [dm6]	C	T	3.750e^-5	0.72	INTRON CG33970
3R	22160770	3R_22160770_SNP [dm3] 3R_26335048_SNP [dm6]	G	A	3.751e^-5	0.72	INTRON CG33970
3R	22160652	3R_22160652_SNP [dm3] 3R_26334930_SNP [dm6]	A	T	3.850e^-5	0.72	INTRON CG33970
3R	17455886	3R_17455886_SNP [dm3] 3R_21630164_SNP [dm6]	T	G	3.897e^-5	0.72	INTRON E2f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	19817489	2L_19817489_SNP [dm3] 2L_19817489_SNP [dm6]	G	A	3.907e^-5	0.72	DOWNSTREAM snRNA:U5:38ABb INTRON sick	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	251323	X_251323_SNP [dm3] X_357290_SNP [dm6]	T	C	3.914e^-5	0.72	INTRON CG32816 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	18291063	X_18291063_SNP [dm3] X_18397030_SNP [dm6]	C	A	3.956e^-5	0.72	INTRON CG32549	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11867112	2R_11867112_SNP [dm3] 2R_15979607_SNP [dm6]	C	T	4.017e^-5	0.72	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_HSA mE1_TFBS_sens

Showing 1 to 100 of 1,000 entries

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GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.417e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.03012

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	7.0129	0.03

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2042 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	11907922	X_11907922_SNP [dm3] X_12013889_SNP [dm6]	A	T	1.985e^-6	0.762	UPSTREAM regucalcin INTRON regucalcin
3R	4875604	3R_4875604_SNP [dm3] 3R_9049882_SNP [dm6]	T	A	2.023e^-6	0.762	UPSTREAM Nmdmc & 1 other INTRON Nmdmc & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	11907867	X_11907867_SNP [dm3] X_12013834_SNP [dm6]	T	C	2.194e^-6	0.762	UPSTREAM regucalcin INTRON regucalcin
X	251358	X_251358_SNP [dm3] X_357325_SNP [dm6]	C	A	3.377e^-6	0.762	INTRON CG32816 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	18231661	2R_18231661_SNP [dm3] 2R_22344156_SNP [dm6]	C	T	3.462e^-6	0.762	INTRON Liprin-gamma
3L	13308940	3L_13308940_SNP [dm3] 3L_13315840_SNP [dm6]	T	A	3.532e^-6	0.762	INTERGENIC
2R	18231652	2R_18231652_SNP [dm3] 2R_22344147_SNP [dm6]	T	G	3.848e^-6	0.762	INTRON Liprin-gamma
X	15669389	X_15669389_SNP [dm3] X_15775356_SNP [dm6]	G	T	4.154e^-6	0.762	NON_SYNONYMOUS_CODING CG43672
X	15669386	X_15669386_SNP [dm3] X_15775353_SNP [dm6]	C	G	4.779e^-6	0.762	SYNONYMOUS_CODING CG43672
X	15385853	X_15385853_SNP [dm3] X_15491820_SNP [dm6]	T	A	4.942e^-6	0.762	INTRON Gmap	TF binding site BDTNP1_TFBS_dl
X	12820358	X_12820358_SNP [dm3] X_12926325_SNP [dm6]	T	A	5.394e^-6	0.762	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	12352257	X_12352257_SNP [dm3] X_12458224_SNP [dm6]	G	T	5.653e^-6	0.762	UPSTREAM CG15731 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	8005476	2L_8005476_SNP [dm3] 2L_8005476_SNP [dm6]	A	G	5.708e^-6	0.762	SYNONYMOUS_CODING Spn28Dc	TF binding site mE1_TFBS_cad
3R	4873741	3R_4873741_SNP [dm3] 3R_9048019_SNP [dm6]	C	A	7.073e^-6	0.762	UPSTREAM Rel & 1 other INTRON Nmdmc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	4874732	3R_4874732_SNP [dm3] 3R_9049010_SNP [dm6]	A	C	7.203e^-6	0.762	UPSTREAM Nmdmc INTRON Nmdmc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	14661409	X_14661409_SNP [dm3] X_14767376_SNP [dm6]	C	T	7.696e^-6	0.762	INTERGENIC
X	11856023	X_11856023_SNP [dm3] X_11961990_SNP [dm6]	G	A	8.088e^-6	0.762	INTRON cac
3R	26812104	3R_26812104_SNP [dm3] 3R_30986382_SNP [dm6]	T	C	9.132e^-6	0.762	INTRON 5-HT7
3R	12919228	3R_12919228_SNP [dm3] 3R_17093506_SNP [dm6]	A	G	9.391e^-6	0.762	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	3898497	X_3898497_SNP [dm3] X_4004464_SNP [dm6]	A	G	1.018e^-5	0.762	INTERGENIC
2R	17398087	2R_17398087_SNP [dm3] 2R_21510582_SNP [dm6]	T	A	1.098e^-5	0.762	INTRON MESK2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3898495	X_3898495_SNP [dm3] X_4004462_SNP [dm6]	A	G	1.232e^-5	0.762	INTERGENIC
2L	6550798	2L_6550798_SNP [dm3] 2L_6550798_SNP [dm6]	A	C	1.276e^-5	0.762	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	25248525	3R_25248525_SNP [dm3] 3R_29422803_SNP [dm6]	T	G	1.314e^-5	0.762	INTRON Ptp99A
2L	9442551	2L_9442551_SNP [dm3] 2L_9442551_SNP [dm6]	C	T	1.357e^-5	0.762	INTRON numb
2R	12396107	2R_12396107_SNP [dm3] 2R_16508602_SNP [dm6]	G	A	1.386e^-5	0.762	INTRON Sema-2a
X	3898543	X_3898543_SNP [dm3] X_4004510_SNP [dm6]	A	C	1.388e^-5	0.762	INTERGENIC
2L	10703480	2L_10703480_SNP [dm3] 2L_10703480_SNP [dm6]	A	T	1.460e^-5	0.762	UPSTREAM CG6415 INTRON Lip2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20329653	3R_20329653_SNP [dm3] 3R_24503931_SNP [dm6]	C	T	1.494e^-5	0.762	INTERGENIC
X	15509970	X_15509970_SNP [dm3] X_15615937_SNP [dm6]	G	C	1.516e^-5	0.762	INTRON sog
2L	21065702	2L_21065702_SNP [dm3] 2L_21065702_SNP [dm6]	C	A	1.560e^-5	0.762	INTRON CG9265
3L	5329534	3L_5329534_INS [dm3] 3L_5336434_INS [dm6]	A	AA	1.587e^-5	0.762	INTERGENIC
3L	7358964	3L_7358964_SNP [dm3] 3L_7365864_SNP [dm6]	C	A	1.653e^-5	0.762	NON_SYNONYMOUS_CODING Sh3beta DOWNSTREAM Sh3beta INTRON Sh3beta	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7699423	2L_7699423_SNP [dm3] 2L_7699423_SNP [dm6]	G	C	1.654e^-5	0.762	SYNONYMOUS_CODING Tep2	TF binding site mE1_TFBS_sens
3R	4873990	3R_4873990_SNP [dm3] 3R_9048268_SNP [dm6]	G	A	1.685e^-5	0.762	UPSTREAM Rel & 1 other INTRON Nmdmc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12352306	X_12352306_SNP [dm3] X_12458273_SNP [dm6]	G	A	1.723e^-5	0.762	UPSTREAM CG15731 INTERGENIC
2L	6553745	2L_6553745_SNP [dm3] 2L_6553745_SNP [dm6]	T	A	1.762e^-5	0.762	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26357057	3R_26357057_DEL [dm3] 3R_30531335_DEL [dm6]	GA	G	1.775e^-5	0.762	INTRON CR45552 EXON CR45553
2R	7120967	2R_7120967_SNP [dm3] 2R_11233462_SNP [dm6]	T	G	1.841e^-5	0.762	SYNONYMOUS_CODING CG13218 UPSTREAM metro & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	19693808	3R_19693808_SNP [dm3] 3R_23868086_SNP [dm6]	G	A	1.876e^-5	0.762	INTRON Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
X	14292594	X_14292594_INS [dm3] X_14398561_INS [dm6]	T	TT	1.897e^-5	0.762	INTRON dpr8
3R	25243054	3R_25243054_SNP [dm3] 3R_29417332_SNP [dm6]	A	C	1.915e^-5	0.762	INTRON Ptp99A
2L	12280905	2L_12280905_SNP [dm3] 2L_12280905_SNP [dm6]	A	C	1.919e^-5	0.762	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	18616629	X_18616629_SNP [dm3] X_18722596_SNP [dm6]	G	A	1.949e^-5	0.762	INTRON CCKLR-17D1
3R	9533721	3R_9533721_SNP [dm3] 3R_13707999_SNP [dm6]	G	C	1.953e^-5	0.762	SYNONYMOUS_CODING Adgf-C	TF binding site mE1_TFBS_cad
3R	13945090	3R_13945090_SNP [dm3] 3R_18119368_SNP [dm6]	C	T	2.037e^-5	0.762	INTRON sr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	3898509	X_3898509_SNP [dm3] X_4004476_SNP [dm6]	A	C	2.232e^-5	0.762	INTERGENIC
2L	9542422	2L_9542422_SNP [dm3] 2L_9542422_SNP [dm6]	G	T	2.350e^-5	0.762	UTR_3_PRIME CG17855 UPSTREAM Cpr30B
3R	22160768	3R_22160768_SNP [dm3] 3R_26335046_SNP [dm6]	G	A	2.522e^-5	0.762	INTRON CG33970
X	286036	X_286036_SNP [dm3] X_392003_SNP [dm6]	G	A	2.532e^-5	0.762	INTRON CG32816 EXON CR44753	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16255416	2L_16255416_SNP [dm3] 2L_16255416_SNP [dm6]	A	G	2.538e^-5	0.762	INTRON PRL-1	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
X	3898476	X_3898476_SNP [dm3] X_4004443_SNP [dm6]	C	A	2.603e^-5	0.762	INTERGENIC
2L	10845051	2L_10845051_SNP [dm3] 2L_10845051_SNP [dm6]	A	G	2.718e^-5	0.762	UPSTREAM CG17140 DOWNSTREAM Porin2 INTRON CG17139 & 1 other
2R	12442548	2R_12442548_SNP [dm3] 2R_16555043_SNP [dm6]	C	T	2.719e^-5	0.762	SYNONYMOUS_CODING Syn2
2R	7721450	2R_7721450_SNP [dm3] 2R_11833945_SNP [dm6]	A	C	2.788e^-5	0.762	INTRON Sobp
X	12610472	X_12610472_SNP [dm3] X_12716439_SNP [dm6]	C	T	2.837e^-5	0.762	INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3898518	X_3898518_SNP [dm3] X_4004485_SNP [dm6]	T	A	2.867e^-5	0.762	INTERGENIC
X	18620071	X_18620071_SNP [dm3] X_18726038_SNP [dm6]	T	C	3.006e^-5	0.762	SYNONYMOUS_CODING CCKLR-17D1 UPSTREAM CG42302	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	4679846	3R_4679846_SNP [dm3] 3R_8854124_SNP [dm6]	C	A	3.022e^-5	0.762	INTRON pyd	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
3R	4262124	3R_4262124_SNP [dm3] 3R_8436402_SNP [dm6]	T	C	3.042e^-5	0.762	INTRON CG45263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10119255	3R_10119255_SNP [dm3] 3R_14293533_SNP [dm6]	T	A	3.061e^-5	0.762	INTRON CG12207
X	3249015	X_3249015_SNP [dm3] X_3354982_SNP [dm6]	T	C	3.063e^-5	0.762	INTERGENIC
2R	5476344	2R_5476344_SNP [dm3] 2R_9588839_SNP [dm6]	T	A	3.063e^-5	0.762	UPSTREAM CG1827 DOWNSTREAM RpL31 INTRON clos	TF binding site mE1_TFBS_cad
2L	15989792	2L_15989792_SNP [dm3] 2L_15989792_SNP [dm6]	G	T	3.147e^-5	0.762	EXON CR43412	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	260204	X_260204_SNP [dm3] X_366171_SNP [dm6]	A	C	3.196e^-5	0.762	INTRON CG32816 & 1 other EXON yar
2R	18452505	2R_18452505_SNP [dm3] 2R_22565000_SNP [dm6]	G	A	3.251e^-5	0.762	SYNONYMOUS_CODING dnr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	293501	X_293501_SNP [dm3] X_399468_SNP [dm6]	T	C	3.254e^-5	0.762	INTRON CG32816	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13309065	3L_13309065_SNP [dm3] 3L_13315965_SNP [dm6]	C	T	3.272e^-5	0.762	INTERGENIC
2R	6875086	2R_6875086_SNP [dm3] 2R_10987581_SNP [dm6]	G	C	3.282e^-5	0.762	INTRON luna
2L	10090369	2L_10090369_DEL [dm3] 2L_10090369_DEL [dm6]	TT	T	3.311e^-5	0.762	DOWNSTREAM CG13133 INTRON CG44153
2L	6650004	2L_6650004_SNP [dm3] 2L_6650004_SNP [dm6]	G	A	3.319e^-5	0.762	SYNONYMOUS_CODING Tango1 UPSTREAM CG31635	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3R	22160753	3R_22160753_SNP [dm3] 3R_26335031_SNP [dm6]	C	T	3.353e^-5	0.762	INTRON CG33970
X	12610642	X_12610642_SNP [dm3] X_12716609_SNP [dm6]	A	T	3.373e^-5	0.762	INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5329546	3L_5329546_SNP [dm3] 3L_5336446_SNP [dm6]	A	T	3.421e^-5	0.762	INTERGENIC
X	17730093	X_17730093_SNP [dm3] X_17836060_SNP [dm6]	T	A	3.508e^-5	0.762	INTRON CG6398
3L	9160188	3L_9160188_SNP [dm3] 3L_9167088_SNP [dm6]	T	C	3.522e^-5	0.762	INTRON Rdl
X	2885827	X_2885827_INS [dm3] X_2991794_INS [dm6]	A	AA	3.576e^-5	0.762	INTRON kirre
X	264409	X_264409_SNP [dm3] X_370376_SNP [dm6]	C	T	3.649e^-5	0.762	NON_SYNONYMOUS_CODING ac INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4747763	2L_4747763_SNP [dm3] 2L_4747763_SNP [dm6]	A	G	3.650e^-5	0.762	INTRON CG15630
X	18620068	X_18620068_SNP [dm3] X_18726035_SNP [dm6]	A	G	3.763e^-5	0.762	SYNONYMOUS_CODING CCKLR-17D1 UPSTREAM CG42302	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	2403238	2R_2403238_SNP [dm3] 2R_6515733_SNP [dm6]	C	T	3.790e^-5	0.762	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	22160664	3R_22160664_SNP [dm3] 3R_26334942_SNP [dm6]	G	T	3.809e^-5	0.762	INTRON CG33970
3R	22160802	3R_22160802_SNP [dm3] 3R_26335080_SNP [dm6]	A	T	3.897e^-5	0.762	INTRON CG33970
3R	22160583	3R_22160583_SNP [dm3] 3R_26334861_SNP [dm6]	A	T	3.947e^-5	0.762	INTRON CG33970
3R	4679834	3R_4679834_SNP [dm3] 3R_8854112_SNP [dm6]	T	A	3.968e^-5	0.762	INTRON pyd	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
2L	10377097	2L_10377097_SNP [dm3] 2L_10377097_SNP [dm6]	A	G	4.036e^-5	0.762	INTRON dpr19	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	275273	X_275273_SNP [dm3] X_381240_SNP [dm6]	C	T	4.036e^-5	0.762	INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14661371	X_14661371_SNP [dm3] X_14767338_SNP [dm6]	G	T	4.057e^-5	0.762	INTERGENIC
X	3898530	X_3898530_SNP [dm3] X_4004497_SNP [dm6]	A	G	4.111e^-5	0.762	INTERGENIC
X	22184258	X_22184258_SNP [dm3] X_22782422_SNP [dm6]	C	T	4.173e^-5	0.762	INTRON CR44997
2L	9922005	2L_9922005_SNP [dm3] 2L_9922005_SNP [dm6]	C	G	4.188e^-5	0.762	DOWNSTREAM CG4594 & 1 other INTRON CG4592	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	9588472	3R_9588472_SNP [dm3] 3R_13762750_SNP [dm6]	C	T	4.351e^-5	0.762	SYNONYMOUS_CODING CG34383 UTR_3_PRIME CG34383 DOWNSTREAM CG34383
3L	13309025	3L_13309025_SNP [dm3] 3L_13315925_SNP [dm6]	A	G	4.355e^-5	0.762	INTERGENIC
2L	13344168	2L_13344168_SNP [dm3] 2L_13344168_SNP [dm6]	T	C	4.435e^-5	0.762	INTERGENIC
2L	9542533	2L_9542533_SNP [dm3] 2L_9542533_SNP [dm6]	G	A	4.472e^-5	0.762	UPSTREAM Cpr30B DOWNSTREAM CG17855 INTERGENIC
X	16299961	X_16299961_SNP [dm3] X_16405928_SNP [dm6]	C	T	4.528e^-5	0.762	UPSTREAM CG9981 & 1 other INTRON CG4301
2L	6630538	2L_6630538_SNP [dm3] 2L_6630538_SNP [dm6]	G	C	4.621e^-5	0.762	INTRON Oatp26F
3R	10399757	3R_10399757_SNP [dm3] 3R_14574035_SNP [dm6]	C	T	4.634e^-5	0.762	SYNONYMOUS_CODING CG7987	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
X	280398	X_280398_SNP [dm3] X_386365_SNP [dm6]	T	G	4.705e^-5	0.762	DOWNSTREAM CR44752 INTRON CG32816
2R	11867112	2R_11867112_SNP [dm3] 2R_15979607_SNP [dm6]	C	T	4.728e^-5	0.762	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_HSA mE1_TFBS_sens

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Phenotype distribution and association to known covariates

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GWAS results