DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.267e^-2)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2857 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	12084593	3L_12084593_SNP [dm3] 3L_12091493_SNP [dm6]	A	C	6.321e^-7	0.526	INTERGENIC
X	3030217	X_3030217_SNP [dm3] X_3136184_SNP [dm6]	A	C	1.211e^-6	0.526	INTRON N	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	12084662	3L_12084662_SNP [dm3] 3L_12091562_SNP [dm6]	A	G	2.089e^-6	0.526	INTERGENIC
3L	9519288	3L_9519288_DEL [dm3] 3L_9526188_DEL [dm6]	GT	G	2.392e^-6	0.526	UPSTREAM CG33700 INTERGENIC
2L	11377079	2L_11377079_SNP [dm3] 2L_11377079_SNP [dm6]	T	G	2.452e^-6	0.526	INTERGENIC	regulatory region REDfly_CRMs
2L	13983778	2L_13983778_SNP [dm3] 2L_13983778_SNP [dm6]	T	A	3.026e^-6	0.526	DOWNSTREAM NimC2 INTRON rk	TF binding site mE1_TFBS_chinmo
2R	18150986	2R_18150986_SNP [dm3] 2R_22263481_SNP [dm6]	T	A	3.118e^-6	0.526	INTRON dve
2L	11377083	2L_11377083_SNP [dm3] 2L_11377083_SNP [dm6]	C	T	3.155e^-6	0.526	INTERGENIC	regulatory region REDfly_CRMs
3R	4162760	3R_4162760_SNP [dm3] 3R_8337038_SNP [dm6]	C	G	3.468e^-6	0.526	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19572858	2R_19572858_SNP [dm3] 2R_23685335_SNP [dm6]	G	T	3.679e^-6	0.526	NON_SYNONYMOUS_CODING l_2_efl DOWNSTREAM St3 INTRON St3	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	25547272	3R_25547272_SNP [dm3] 3R_29721550_SNP [dm6]	A	G	3.830e^-6	0.526	UPSTREAM CG34296 INTRON CG15506	TF binding site mE1_TFBS_chinmo
3R	25547341	3R_25547341_SNP [dm3] 3R_29721619_SNP [dm6]	A	G	4.316e^-6	0.526	UPSTREAM CG34296 INTRON CG15506	TF binding site mE1_TFBS_chinmo
3R	13908845	3R_13908845_SNP [dm3] 3R_18083123_SNP [dm6]	T	C	4.448e^-6	0.526	DOWNSTREAM CG14317 INTERGENIC
3L	735923	3L_735923_SNP [dm3] 3L_735923_SNP [dm6]	T	G	4.633e^-6	0.526	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	4814877	3L_4814877_SNP [dm3] 3L_4814877_SNP [dm6]	C	T	4.788e^-6	0.526	SYNONYMOUS_CODING Dhc64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4814856	3L_4814856_SNP [dm3] 3L_4814856_SNP [dm6]	C	A	4.799e^-6	0.526	SYNONYMOUS_CODING Dhc64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12477370	2L_12477370_SNP [dm3] 2L_12477370_SNP [dm6]	A	C	4.866e^-6	0.526	INTRON bun
2R	18151006	2R_18151006_SNP [dm3] 2R_22263501_SNP [dm6]	G	C	5.289e^-6	0.526	INTRON dve
2R	18152141	2R_18152141_SNP [dm3] 2R_22264636_SNP [dm6]	G	T	5.551e^-6	0.526	INTRON dve
3R	25547286	3R_25547286_MNP [dm3] 3R_29721564_MNP [dm6]	GAA	TTT	5.679e^-6	0.526	UPSTREAM CG34296 INTRON CG15506	TF binding site mE1_TFBS_chinmo
X	21878369	X_21878369_SNP [dm3] X_22476533_SNP [dm6]	A	T	5.889e^-6	0.526	INTRON CG12576
X	21878382	X_21878382_SNP [dm3] X_22476546_SNP [dm6]	T	C	6.332e^-6	0.531	INTRON CG12576
2R	17964172	2R_17964172_SNP [dm3] 2R_22076667_SNP [dm6]	T	C	6.684e^-6	0.531	SYNONYMOUS_CODING GlcT-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10278162	2R_10278162_SNP [dm3] 2R_14390657_SNP [dm6]	A	G	6.796e^-6	0.531	UPSTREAM CG10104 INTERGENIC	TF binding site mE1_TFBS_cad
3R	13908536	3R_13908536_SNP [dm3] 3R_18082814_SNP [dm6]	T	A	7.228e^-6	0.532	DOWNSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	889662	2R_889662_SNP [dm3] 2R_5002157_SNP [dm6]	T	C	7.778e^-6	0.532	INTRON Ir41a
2L	13318031	2L_13318031_SNP [dm3] 2L_13318031_SNP [dm6]	G	C	7.903e^-6	0.532	INTRON CG43778
3L	9519315	3L_9519315_SNP [dm3] 3L_9526215_SNP [dm6]	A	G	7.941e^-6	0.532	UPSTREAM CG33700 INTERGENIC
2L	14066971	2L_14066971_SNP [dm3] 2L_14066971_SNP [dm6]	A	G	8.429e^-6	0.545	INTRON nAChRalpha5
2R	18278806	2R_18278806_SNP [dm3] 2R_22391301_SNP [dm6]	A	G	8.763e^-6	0.548	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5516775	2L_5516775_SNP [dm3] 2L_5516775_SNP [dm6]	A	T	9.444e^-6	0.564	UPSTREAM CG14020 INTERGENIC
3L	17784937	3L_17784937_SNP [dm3] 3L_17791837_SNP [dm6]	C	A	9.892e^-6	0.564	UPSTREAM CG42815 DOWNSTREAM CG42816 INTERGENIC
2R	10278166	2R_10278166_SNP [dm3] 2R_14390661_SNP [dm6]	G	A	9.931e^-6	0.564	UPSTREAM CG10104 INTERGENIC	TF binding site mE1_TFBS_cad
2R	18152832	2R_18152832_SNP [dm3] 2R_22265327_SNP [dm6]	C	A	1.035e^-5	0.571	INTRON dve	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	7367748	3R_7367748_SNP [dm3] 3R_11542026_SNP [dm6]	G	T	1.066e^-5	0.571	INTRON dpr4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	14971334	3L_14971334_SNP [dm3] 3L_14978234_SNP [dm6]	T	A	1.173e^-5	0.582	UPSTREAM CR43432 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	25547306	3R_25547306_SNP [dm3] 3R_29721584_SNP [dm6]	T	C	1.265e^-5	0.582	UPSTREAM CG34296 INTRON CG15506	TF binding site mE1_TFBS_chinmo
2R	18142985	2R_18142985_SNP [dm3] 2R_22255480_SNP [dm6]	G	T	1.292e^-5	0.582	INTRON dve	TF binding site mE1_TFBS_sens
X	21878335	X_21878335_SNP [dm3] X_22476499_SNP [dm6]	G	C	1.342e^-5	0.582	INTRON CG12576
3L	4929448	3L_4929448_SNP [dm3] 3L_4929448_SNP [dm6]	T	G	1.382e^-5	0.582	DOWNSTREAM CR43627 EXON CR43627
2L	6100966	2L_6100966_SNP [dm3] 2L_6100966_SNP [dm6]	C	A	1.390e^-5	0.582	INTRON stai	TF binding site BDTNP1_TFBS_dl
3R	13908836	3R_13908836_SNP [dm3] 3R_18083114_SNP [dm6]	A	G	1.581e^-5	0.582	DOWNSTREAM CG14317 INTERGENIC
3L	4788729	3L_4788729_SNP [dm3] 3L_4788729_SNP [dm6]	T	C	1.632e^-5	0.582	INTRON RhoGEF64C	TF binding site mE1_TFBS_chinmo
3L	20759720	3L_20759720_SNP [dm3] 3L_20766620_SNP [dm6]	G	A	1.649e^-5	0.582	INTERGENIC
3L	2939776	3L_2939776_SNP [dm3] 3L_2939776_SNP [dm6]	C	G	1.664e^-5	0.582	INTRON Shab
3L	10534837	3L_10534837_SNP [dm3] 3L_10541737_SNP [dm6]	T	A	1.700e^-5	0.582	INTRON A2bp1
X	19054715	X_19054715_SNP [dm3] X_19160682_SNP [dm6]	C	T	1.747e^-5	0.582	INTRON RhoGAP18B	TF binding site mE1_TFBS_HSA
2L	11379370	2L_11379370_SNP [dm3] 2L_11379370_SNP [dm6]	T	G	1.851e^-5	0.582	INTERGENIC	regulatory region REDfly_CRMs
X	19053942	X_19053942_SNP [dm3] X_19159909_SNP [dm6]	A	C	1.887e^-5	0.582	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9316103	2R_9316103_SNP [dm3] 2R_13428598_SNP [dm6]	A	G	1.957e^-5	0.582	INTRON CG42321
2L	6101740	2L_6101740_SNP [dm3] 2L_6101740_SNP [dm6]	T	C	2.013e^-5	0.582	UTR_5_PRIME stai
2L	10554747	2L_10554747_SNP [dm3] 2L_10554747_SNP [dm6]	G	A	2.022e^-5	0.582	INTRON Trim9	TF binding site mE1_TFBS_cad
3L	18021568	3L_18021568_SNP [dm3] 3L_18028468_SNP [dm6]	G	T	2.045e^-5	0.582	INTRON Eip75B
3R	25546509	3R_25546509_SNP [dm3] 3R_29720787_SNP [dm6]	A	T	2.059e^-5	0.582	INTRON CG15506
3R	23465884	3R_23465884_SNP [dm3] 3R_27640162_SNP [dm6]	G	T	2.060e^-5	0.582	SYNONYMOUS_CODING tau DOWNSTREAM tau & 1 other
2L	13706495	2L_13706495_SNP [dm3] 2L_13706495_SNP [dm6]	G	A	2.062e^-5	0.582	INTRON CG31814
3L	5876115	3L_5876115_SNP [dm3] 3L_5883015_SNP [dm6]	C	G	2.111e^-5	0.582	SYNONYMOUS_CODING CG13287	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15421776	2R_15421776_SNP [dm3] 2R_19534271_SNP [dm6]	A	T	2.179e^-5	0.582	INTRON sm
2R	14768241	2R_14768241_SNP [dm3] 2R_18880736_SNP [dm6]	A	T	2.210e^-5	0.582	INTRON sano
3R	25373353	3R_25373353_SNP [dm3] 3R_29547631_SNP [dm6]	G	T	2.282e^-5	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8658605	2L_8658605_SNP [dm3] 2L_8658605_SNP [dm6]	C	T	2.349e^-5	0.582	INTRON Sema-1a
X	5218683	X_5218683_SNP [dm3] X_5324650_SNP [dm6]	C	T	2.409e^-5	0.582	SYNONYMOUS_CODING Mcm3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	16062975	2L_16062975_SNP [dm3] 2L_16062975_SNP [dm6]	G	A	2.447e^-5	0.582	INTRON beat-Ia
3L	14141528	3L_14141528_SNP [dm3] 3L_14148428_SNP [dm6]	A	G	2.457e^-5	0.582	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	16399944	3L_16399944_SNP [dm3] 3L_16406844_SNP [dm6]	A	T	2.464e^-5	0.582	INTRON fax	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	17552598	3R_17552598_SNP [dm3] 3R_21726876_SNP [dm6]	A	T	2.492e^-5	0.582	INTERGENIC
3L	4788754	3L_4788754_SNP [dm3] 3L_4788754_SNP [dm6]	G	T	2.541e^-5	0.582	INTRON RhoGEF64C	TF binding site mE1_TFBS_chinmo
2R	18152314	2R_18152314_DEL [dm3] 2R_22264809_DEL [dm6]	GGAAGAGGAT	G	2.542e^-5	0.582	INTRON dve	TF binding site mE1_TFBS_sens
2R	12819382	2R_12819382_SNP [dm3] 2R_16931877_SNP [dm6]	A	G	2.592e^-5	0.582	INTRON Pkc53E
2L	11379572	2L_11379572_SNP [dm3] 2L_11379572_SNP [dm6]	A	T	2.593e^-5	0.582	INTERGENIC	regulatory region REDfly_CRMs
3L	18021548	3L_18021548_SNP [dm3] 3L_18028448_SNP [dm6]	G	A	2.625e^-5	0.582	INTRON Eip75B
3R	19364594	3R_19364594_SNP [dm3] 3R_23538872_SNP [dm6]	G	C	2.630e^-5	0.582	UTR_5_PRIME CG10168
3R	4416302	3R_4416302_SNP [dm3] 3R_8590580_SNP [dm6]	G	C	2.709e^-5	0.582	INTRON 5-HT2B
3L	18021557	3L_18021557_SNP [dm3] 3L_18028457_SNP [dm6]	A	G	2.754e^-5	0.582	INTRON Eip75B
3R	4759303	3R_4759303_SNP [dm3] 3R_8933581_SNP [dm6]	T	C	2.776e^-5	0.582	DOWNSTREAM CR44020 INTERGENIC
2R	18150374	2R_18150374_SNP [dm3] 2R_22262869_SNP [dm6]	G	A	2.869e^-5	0.582	SYNONYMOUS_CODING dve	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18147951	2R_18147951_SNP [dm3] 2R_22260446_SNP [dm6]	A	G	3.028e^-5	0.582	INTRON dve
3L	9521557	3L_9521557_SNP [dm3] 3L_9528457_SNP [dm6]	C	T	3.042e^-5	0.582	UPSTREAM Or67a INTERGENIC
3L	4830220	3L_4830220_SNP [dm3] 3L_4830220_SNP [dm6]	A	C	3.066e^-5	0.582	SYNONYMOUS_CODING CG13708	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10615102	3L_10615102_SNP [dm3] 3L_10622002_SNP [dm6]	C	G	3.164e^-5	0.582	INTERGENIC
3L	18021741	3L_18021741_SNP [dm3] 3L_18028641_SNP [dm6]	A	G	3.238e^-5	0.582	INTRON Eip75B
2R	18148296	2R_18148296_SNP [dm3] 2R_22260791_SNP [dm6]	A	G	3.334e^-5	0.582	INTRON dve
3L	20934543	3L_20934543_SNP [dm3] 3L_20941443_SNP [dm6]	A	G	3.408e^-5	0.582	INTRON fng	TF binding site mE1_TFBS_sens
3L	9514913	3L_9514913_SNP [dm3] 3L_9521813_SNP [dm6]	G	A	3.424e^-5	0.582	INTRON CG33700
2L	9433463	2L_9433463_SNP [dm3] 2L_9433463_SNP [dm6]	G	A	3.475e^-5	0.582	SYNONYMOUS_CODING scat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11798044	2R_11798044_SNP [dm3] 2R_15910539_SNP [dm6]	A	T	3.513e^-5	0.582	INTRON sli
3L	5598025	3L_5598025_SNP [dm3] 3L_5604925_SNP [dm6]	C	G	3.518e^-5	0.582	NON_SYNONYMOUS_CODING mthl2 UPSTREAM CG10590
3R	17901666	3R_17901666_SNP [dm3] 3R_22075944_SNP [dm6]	A	C	3.528e^-5	0.582	INTRON how
2L	5516708	2L_5516708_SNP [dm3] 2L_5516708_SNP [dm6]	A	G	3.551e^-5	0.582	INTERGENIC
2L	11377583	2L_11377583_SNP [dm3] 2L_11377583_SNP [dm6]	G	C	3.591e^-5	0.582	INTERGENIC	regulatory region REDfly_CRMs
2L	12610355	2L_12610355_SNP [dm3] 2L_12610355_SNP [dm6]	T	C	3.599e^-5	0.582	DOWNSTREAM Ref2 INTRON nub	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18145810	2R_18145810_SNP [dm3] 2R_22258305_SNP [dm6]	A	G	3.618e^-5	0.582	INTRON dve	TF binding site mE1_TFBS_chinmo
3R	25373346	3R_25373346_SNP [dm3] 3R_29547624_SNP [dm6]	G	A	3.705e^-5	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	20904678	3L_20904678_SNP [dm3] 3L_20911578_SNP [dm6]	T	A	3.717e^-5	0.582	INTERGENIC	TF binding site mE1_TFBS_HSA
X	13204342	X_13204342_SNP [dm3] X_13310309_SNP [dm6]	C	G	3.736e^-5	0.582	INTRON IP3K2
2L	15483750	2L_15483750_SNP [dm3] 2L_15483750_SNP [dm6]	A	C	3.830e^-5	0.582	UPSTREAM Tim17b2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	12086025	2L_12086025_SNP [dm3] 2L_12086025_SNP [dm6]	T	G	3.831e^-5	0.582	UPSTREAM prd & 1 other EXON CR44592	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17808148	2L_17808148_SNP [dm3] 2L_17808148_SNP [dm6]	G	A	4.014e^-5	0.582	INTRON CadN2
2L	11376264	2L_11376264_SNP [dm3] 2L_11376264_SNP [dm6]	T	C	4.039e^-5	0.582	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	3433641	3R_3433641_SNP [dm3] 3R_7607919_SNP [dm6]	C	A	4.071e^-5	0.582	INTRON CG34127
X	5719552	X_5719552_SNP [dm3] X_5825519_SNP [dm6]	T	A	4.089e^-5	0.582	INTRON CG15765	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3374342	3R_3374342_SNP [dm3] 3R_7548620_SNP [dm6]	G	A	4.127e^-5	0.582	INTRON alpha-Est1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8207093	2R_8207093_SNP [dm3] 2R_12319588_SNP [dm6]	G	T	4.129e^-5	0.582	INTERGENIC
3L	4829206	3L_4829206_SNP [dm3] 3L_4829206_SNP [dm6]	A	G	4.134e^-5	0.582	SYNONYMOUS_CODING CG13708 DOWNSTREAM Aats-leu	TF binding site mE1_TFBS_cad
3L	7812246	3L_7812246_SNP [dm3] 3L_7819146_SNP [dm6]	A	G	4.177e^-5	0.582	INTRON Pdp1	TF binding site BDTNP1_TFBS_z
3L	9515268	3L_9515268_SNP [dm3] 3L_9522168_SNP [dm6]	A	T	4.186e^-5	0.582	INTRON CG33700
3R	3419674	3R_3419674_SNP [dm3] 3R_7593952_SNP [dm6]	A	G	4.307e^-5	0.582	INTRON CG34127
3R	3381797	3R_3381797_SNP [dm3] 3R_7556075_SNP [dm6]	C	T	4.365e^-5	0.582	INTERGENIC
3L	10532425	3L_10532425_SNP [dm3] 3L_10539325_SNP [dm6]	A	G	4.376e^-5	0.582	INTRON A2bp1
3L	6692907	3L_6692907_SNP [dm3] 3L_6699807_SNP [dm6]	G	A	4.410e^-5	0.582	INTRON SP1173
3L	17785817	3L_17785817_SNP [dm3] 3L_17792717_SNP [dm6]	C	T	4.441e^-5	0.582	SYNONYMOUS_CODING CG42816
2L	11122532	2L_11122532_SNP [dm3] 2L_11122532_SNP [dm6]	G	A	4.465e^-5	0.582	UPSTREAM CG14921 DOWNSTREAM Csl4 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26719270	3R_26719270_SNP [dm3] 3R_30893548_SNP [dm6]	A	C	4.474e^-5	0.582	UPSTREAM Cyp4c3 INTERGENIC	TF binding site BDTNP1_TFBS_hb
2R	17074701	2R_17074701_SNP [dm3] 2R_21187196_SNP [dm6]	G	A	4.513e^-5	0.582	SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_sens
3R	20072935	3R_20072935_SNP [dm3] 3R_24247213_SNP [dm6]	A	T	4.547e^-5	0.582	SYNONYMOUS_CODING mask	TF binding site mE1_TFBS_chinmo
X	3030216	X_3030216_SNP [dm3] X_3136183_SNP [dm6]	C	T	4.567e^-5	0.582	INTRON N	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	19390586	2R_19390586_SNP [dm3] 2R_23503063_SNP [dm6]	T	C	4.642e^-5	0.582	UTR_5_PRIME CG13559	TF binding site mE1_TFBS_inv
2L	5397265	2L_5397265_DEL [dm3] 2L_5397265_DEL [dm6]	ATGGA	A	4.651e^-5	0.582	INTERGENIC
3L	21389060	3L_21389060_SNP [dm3] 3L_21395960_SNP [dm6]	A	T	4.668e^-5	0.582	INTRON rgn
3L	18021555	3L_18021555_SNP [dm3] 3L_18028455_SNP [dm6]	T	G	4.675e^-5	0.582	INTRON Eip75B
3R	7357015	3R_7357015_SNP [dm3] 3R_11531293_SNP [dm6]	A	G	4.802e^-5	0.582	INTERGENIC
3L	20775821	3L_20775821_SNP [dm3] 3L_20782721_SNP [dm6]	C	T	4.819e^-5	0.582	INTRON CG11399	TF binding site mE1_TFBS_cad
2R	18152043	2R_18152043_SNP [dm3] 2R_22264538_SNP [dm6]	G	T	4.823e^-5	0.582	INTRON dve
X	15381239	X_15381239_SNP [dm3] X_15487206_SNP [dm6]	C	T	4.851e^-5	0.582	UTR_5_PRIME Gmap DOWNSTREAM CG6340	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11122533	2L_11122533_SNP [dm3] 2L_11122533_SNP [dm6]	T	G	4.909e^-5	0.582	UPSTREAM CG14921 DOWNSTREAM Csl4 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18217228	2L_18217228_SNP [dm3] 2L_18217228_SNP [dm6]	C	T	4.935e^-5	0.582	INTRON CG42750
3L	20857292	3L_20857292_SNP [dm3] 3L_20864192_SNP [dm6]	T	C	4.985e^-5	0.582	INTRON CG32432
2R	17075274	2R_17075274_SNP [dm3] 2R_21187769_SNP [dm6]	T	G	4.992e^-5	0.582	SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17075295	2R_17075295_SNP [dm3] 2R_21187790_SNP [dm6]	T	G	4.992e^-5	0.582	NON_SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_sens
X	10852835	X_10852835_SNP [dm3] X_10958802_SNP [dm6]	G	C	4.998e^-5	0.582	INTRON Myo10A
2L	5453935	2L_5453935_SNP [dm3] 2L_5453935_SNP [dm6]	G	T	5.014e^-5	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2R	18291738	2R_18291738_SNP [dm3] 2R_22404233_SNP [dm6]	T	C	5.059e^-5	0.582	UTR_5_PRIME CG6044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	15426675	2R_15426675_SNP [dm3] 2R_19539170_SNP [dm6]	T	A	5.076e^-5	0.582	INTRON sm
X	8173006	X_8173006_SNP [dm3] X_8278973_SNP [dm6]	A	C	5.097e^-5	0.582	UTR_3_PRIME nAChRalpha3
3R	25547412	3R_25547412_SNP [dm3] 3R_29721690_SNP [dm6]	T	C	5.125e^-5	0.582	SYNONYMOUS_CODING CG15506 UPSTREAM CG34296	TF binding site mE1_TFBS_chinmo
3R	11255600	3R_11255600_SNP [dm3] 3R_15429878_SNP [dm6]	A	T	5.131e^-5	0.582	INTRON CG6118
2R	16461403	2R_16461403_SNP [dm3] 2R_20573898_SNP [dm6]	A	G	5.159e^-5	0.582	INTRON qsm	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12084728	3L_12084728_SNP [dm3] 3L_12091628_SNP [dm6]	C	A	5.162e^-5	0.582	INTERGENIC
2R	16684135	2R_16684135_SNP [dm3] 2R_20796630_SNP [dm6]	C	G	5.175e^-5	0.582	INTERGENIC	TF binding site mE1_TFBS_cad
X	3954379	X_3954379_SNP [dm3] X_4060346_SNP [dm6]	G	T	5.186e^-5	0.582	INTERGENIC
2L	17606500	2L_17606500_SNP [dm3] 2L_17606500_SNP [dm6]	C	A	5.213e^-5	0.582	EXON CR44412
3L	10074540	3L_10074540_SNP [dm3] 3L_10081440_SNP [dm6]	G	A	5.231e^-5	0.582	INTRON dpr6
X	3030133	X_3030133_INS [dm3] X_3136100_INS [dm6]	T	TTTTCTGAACATTC...	5.237e^-5	0.582	INTRON N	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	17974228	2R_17974228_SNP [dm3] 2R_22086723_SNP [dm6]	G	A	5.249e^-5	0.582	DOWNSTREAM Synj INTRON CG13502
X	15382166	X_15382166_SNP [dm3] X_15488133_SNP [dm6]	G	T	5.263e^-5	0.582	INTRON Gmap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8221642	2L_8221642_SNP [dm3] 2L_8221642_SNP [dm6]	C	T	5.270e^-5	0.582	SYNONYMOUS_CODING Pvr UPSTREAM Snx6
3L	2533118	3L_2533118_SNP [dm3] 3L_2533118_SNP [dm6]	A	G	5.336e^-5	0.582	INTRON Spn
3L	2533333	3L_2533333_SNP [dm3] 3L_2533333_SNP [dm6]	C	T	5.336e^-5	0.582	INTRON Spn
3L	2533336	3L_2533336_SNP [dm3] 3L_2533336_SNP [dm6]	C	T	5.336e^-5	0.582	INTRON Spn
3L	17785829	3L_17785829_SNP [dm3] 3L_17792729_SNP [dm6]	A	G	5.450e^-5	0.582	SYNONYMOUS_CODING CG42816
2R	9557685	2R_9557685_SNP [dm3] 2R_13670180_SNP [dm6]	A	G	5.571e^-5	0.582	NON_SYNONYMOUS_CODING CG18368 INTRON fas
2L	11337628	2L_11337628_SNP [dm3] 2L_11337628_SNP [dm6]	A	T	5.614e^-5	0.582	DOWNSTREAM CR44585 INTERGENIC	TF binding site mE1_TFBS_cad
3L	2533275	3L_2533275_SNP [dm3] 3L_2533275_SNP [dm6]	C	T	5.653e^-5	0.582	INTRON Spn
3R	13908750	3R_13908750_SNP [dm3] 3R_18083028_SNP [dm6]	G	A	5.658e^-5	0.582	DOWNSTREAM CG14317 INTERGENIC
2L	20967186	2L_20967186_SNP [dm3] 2L_20967186_SNP [dm6]	C	T	5.678e^-5	0.582	UTR_3_PRIME CG42238	TF binding site BDTNP1_TFBS_twi
2L	13802727	2L_13802727_SNP [dm3] 2L_13802727_SNP [dm6]	A	G	5.717e^-5	0.582	UPSTREAM CAH1 INTERGENIC
X	17062876	X_17062876_SNP [dm3] X_17168843_SNP [dm6]	A	T	5.754e^-5	0.582	INTRON baz
3L	14563211	3L_14563211_SNP [dm3] 3L_14570111_SNP [dm6]	A	G	5.806e^-5	0.582	INTERGENIC
2R	11798028	2R_11798028_SNP [dm3] 2R_15910523_SNP [dm6]	C	T	5.817e^-5	0.582	INTRON sli
3R	25855902	3R_25855902_SNP [dm3] 3R_30030180_SNP [dm6]	G	A	5.831e^-5	0.582	INTRON Axn	TF binding site BDTNP1_TFBS_dl
2R	17231837	2R_17231837_SNP [dm3] 2R_21344332_SNP [dm6]	C	G	5.855e^-5	0.582	NON_SYNONYMOUS_CODING CG15666
X	19632720	X_19632720_SNP [dm3] X_19738687_SNP [dm6]	T	G	5.861e^-5	0.582	UTR_3_PRIME CG14234
3L	5396833	3L_5396833_SNP [dm3] 3L_5403733_SNP [dm6]	C	T	5.912e^-5	0.582	INTERGENIC
3L	5876334	3L_5876334_SNP [dm3] 3L_5883234_SNP [dm6]	C	T	5.994e^-5	0.582	SYNONYMOUS_CODING CG13287	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16686851	2R_16686851_SNP [dm3] 2R_20799346_SNP [dm6]	G	C	6.023e^-5	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4652260	3L_4652260_INS [dm3] 3L_4652260_INS [dm6]	T	TCT	6.116e^-5	0.582	INTRON axo
3R	25547367	3R_25547367_SNP [dm3] 3R_29721645_SNP [dm6]	C	T	6.118e^-5	0.582	SPLICE_SITE_REGION CG15506 SYNONYMOUS_CODING CG15506 UPSTREAM CG34296	TF binding site mE1_TFBS_chinmo
3R	3448415	3R_3448415_SNP [dm3] 3R_7622693_SNP [dm6]	C	A	6.121e^-5	0.582	INTRON CG34127
3L	8215570	3L_8215570_SNP [dm3] 3L_8222470_SNP [dm6]	G	A	6.130e^-5	0.582	NON_SYNONYMOUS_CODING CG13678	TF binding site mE1_TFBS_cad
3L	13896582	3L_13896582_SNP [dm3] 3L_13903482_SNP [dm6]	A	G	6.184e^-5	0.582	UPSTREAM dysc INTERGENIC
2R	19572991	2R_19572991_SNP [dm3] 2R_23685468_SNP [dm6]	C	T	6.203e^-5	0.582	DOWNSTREAM St3 INTRON St3 & 1 other	TF binding site mE1_TFBS_cad
2R	19572992	2R_19572992_SNP [dm3] 2R_23685469_SNP [dm6]	C	A	6.203e^-5	0.582	DOWNSTREAM St3 INTRON St3 & 1 other	TF binding site mE1_TFBS_cad
2L	15243655	2L_15243655_SNP [dm3] 2L_15243655_SNP [dm6]	T	C	6.220e^-5	0.582	INTRON ZnT35C
3L	5777696	3L_5777696_SNP [dm3] 3L_5784596_SNP [dm6]	T	C	6.226e^-5	0.582	UTR_3_PRIME Pmi & 1 other INTRON Cralbp	TF binding site mE1_TFBS_cad
2L	7861352	2L_7861352_SNP [dm3] 2L_7861352_SNP [dm6]	T	G	6.240e^-5	0.582	UPSTREAM TwdlE INTERGENIC
2R	17097154	2R_17097154_SNP [dm3] 2R_21209649_SNP [dm6]	A	T	6.254e^-5	0.582	UTR_3_PRIME Glycogenin INTRON CG44245 & 1 other
2R	16074809	2R_16074809_SNP [dm3] 2R_20187304_SNP [dm6]	G	T	6.254e^-5	0.582	INTERGENIC
X	7931151	X_7931151_SNP [dm3] X_8037118_SNP [dm6]	T	C	6.295e^-5	0.582	NON_SYNONYMOUS_CODING CG2233 DOWNSTREAM fs_1_h
3L	7097892	3L_7097892_SNP [dm3] 3L_7104792_SNP [dm6]	A	G	6.322e^-5	0.582	INTRON form3
3L	821968	3L_821968_SNP [dm3] 3L_821968_SNP [dm6]	C	A	6.338e^-5	0.582	DOWNSTREAM CR43883 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	17787281	3L_17787281_SNP [dm3] 3L_17794181_SNP [dm6]	T	C	6.385e^-5	0.582	NON_SYNONYMOUS_CODING CG42816
3L	2186062	3L_2186062_SNP [dm3] 3L_2186062_SNP [dm6]	C	T	6.402e^-5	0.582	INTRON CG13810	TF binding site BDTNP1_TFBS_twi
2R	18152586	2R_18152586_SNP [dm3] 2R_22265081_SNP [dm6]	C	T	6.413e^-5	0.582	INTRON dve	TF binding site mE1_TFBS_inv
3L	9522782	3L_9522782_SNP [dm3] 3L_9529682_SNP [dm6]	G	A	6.420e^-5	0.582	INTRON Or67a
2L	6423441	2L_6423441_SNP [dm3] 2L_6423441_SNP [dm6]	G	C	6.449e^-5	0.582	UPSTREAM Tig & 1 other INTERGENIC
X	3030180	X_3030180_SNP [dm3] X_3136147_SNP [dm6]	G	T	6.467e^-5	0.582	INTRON N	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	2532521	3L_2532521_INS [dm3] 3L_2532521_INS [dm6]	C	AATATAAAAATAAT...	6.541e^-5	0.582	INTRON Spn
3L	2532730	3L_2532730_SNP [dm3] 3L_2532730_SNP [dm6]	G	A	6.541e^-5	0.582	INTRON Spn
3L	2532903	3L_2532903_SNP [dm3] 3L_2532903_SNP [dm6]	C	G	6.541e^-5	0.582	INTRON Spn
2R	19373001	2R_19373001_DEL [dm3] 2R_23485478_DEL [dm6]	TT	T	6.543e^-5	0.582	INTRON CG43795
3L	4829320	3L_4829320_SNP [dm3] 3L_4829320_SNP [dm6]	T	C	6.560e^-5	0.582	NON_SYNONYMOUS_CODING CG13708 DOWNSTREAM Aats-leu	TF binding site mE1_TFBS_cad
2L	11407581	2L_11407581_SNP [dm3] 2L_11407581_SNP [dm6]	C	T	6.562e^-5	0.582	INTERGENIC	regulatory region REDfly_CRMs
3L	10064884	3L_10064884_DEL [dm3] 3L_10071784_DEL [dm6]	GCGTCATTAACAT...	G	6.630e^-5	0.582	CODON_DELETION dpr6 INTRON dpr6	TF binding site mE1_TFBS_HSA
3R	11267317	3R_11267317_SNP [dm3] 3R_15441595_SNP [dm6]	C	A	6.636e^-5	0.582	DOWNSTREAM AdamTS-A INTRON Act88F	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	10438934	3L_10438934_SNP [dm3] 3L_10445834_SNP [dm6]	T	A	6.648e^-5	0.582	INTERGENIC
X	19632709	X_19632709_SNP [dm3] X_19738676_SNP [dm6]	C	T	6.709e^-5	0.582	UTR_3_PRIME CG14234
2L	7110313	2L_7110313_SNP [dm3] 2L_7110313_SNP [dm6]	A	C	6.717e^-5	0.582	INTRON Pvf3
2R	19791784	2R_19791784_SNP [dm3] 2R_23904261_SNP [dm6]	T	G	6.773e^-5	0.582	DOWNSTREAM Lpt & 1 other INTRON CG13562
3R	4162889	3R_4162889_SNP [dm3] 3R_8337167_SNP [dm6]	T	A	6.774e^-5	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14603486	3R_14603486_SNP [dm3] 3R_18777764_SNP [dm6]	A	G	6.842e^-5	0.582	INTRON CG7720
3L	20949800	3L_20949800_SNP [dm3] 3L_20956700_SNP [dm6]	A	C	6.861e^-5	0.582	SYNONYMOUS_CODING Sems UPSTREAM CG10588
3L	18572229	3L_18572229_DEL [dm3] 3L_18579129_DEL [dm6]	TGC	T	6.867e^-5	0.582	INTERGENIC
3R	4162761	3R_4162761_SNP [dm3] 3R_8337039_SNP [dm6]	A	G	6.942e^-5	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1444026	3L_1444026_SNP [dm3] 3L_1444026_SNP [dm6]	T	C	6.981e^-5	0.582	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4830154	3L_4830154_SNP [dm3] 3L_4830154_SNP [dm6]	G	A	7.003e^-5	0.582	SYNONYMOUS_CODING CG13708	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6997964	3L_6997964_SNP [dm3] 3L_7004864_SNP [dm6]	C	G	7.031e^-5	0.582	INTRON Mp
2R	18889406	2R_18889406_DEL [dm3] 2R_23001883_DEL [dm6]	TG	T	7.035e^-5	0.582	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	18889409	2R_18889409_SNP [dm3] 2R_23001886_SNP [dm6]	T	G	7.035e^-5	0.582	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	821970	3L_821970_SNP [dm3] 3L_821970_SNP [dm6]	T	G	7.041e^-5	0.582	DOWNSTREAM CR43883 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	13731338	2R_13731338_SNP [dm3] 2R_17843833_SNP [dm6]	T	A	7.076e^-5	0.582	UTR_5_PRIME olf186-F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11238329	2R_11238329_SNP [dm3] 2R_15350824_SNP [dm6]	T	C	7.080e^-5	0.582	INTRON unc-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25373355	3R_25373355_SNP [dm3] 3R_29547633_SNP [dm6]	C	T	7.096e^-5	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4094176	2L_4094176_SNP [dm3] 2L_4094176_SNP [dm6]	G	A	7.106e^-5	0.582	INTRON ed	TF binding site BDTNP1_TFBS_twi
2L	13603134	2L_13603134_SNP [dm3] 2L_13603134_SNP [dm6]	G	C	7.135e^-5	0.582	INTRON kuz
2L	13331886	2L_13331886_SNP [dm3] 2L_13331886_SNP [dm6]	T	C	7.155e^-5	0.582	UPSTREAM CG43778 INTERGENIC
2L	6101662	2L_6101662_SNP [dm3] 2L_6101662_SNP [dm6]	C	A	7.200e^-5	0.582	INTRON stai
2L	7861662	2L_7861662_SNP [dm3] 2L_7861662_SNP [dm6]	A	G	7.215e^-5	0.582	UPSTREAM TwdlE INTERGENIC
2L	13822648	2L_13822648_SNP [dm3] 2L_13822648_SNP [dm6]	A	T	7.221e^-5	0.582	INTRON b	TF binding site mE1_TFBS_cad
3R	25547622	3R_25547622_SNP [dm3] 3R_29721900_SNP [dm6]	T	C	7.229e^-5	0.582	SYNONYMOUS_CODING CG15506 UPSTREAM CG34296	TF binding site mE1_TFBS_chinmo
2L	11330109	2L_11330109_INS [dm3] 2L_11330109_INS [dm6]	T	TT	7.243e^-5	0.582	INTERGENIC
2L	1480182	2L_1480182_SNP [dm3] 2L_1480182_SNP [dm6]	G	A	7.265e^-5	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	14971369	3L_14971369_INS [dm3] 3L_14978269_INS [dm6]	T	TT	7.274e^-5	0.582	UPSTREAM CR43432 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9985120	2L_9985120_SNP [dm3] 2L_9985120_SNP [dm6]	T	C	7.308e^-5	0.582	SYNONYMOUS_CODING bib UPSTREAM CR13130	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	10614986	3L_10614986_SNP [dm3] 3L_10621886_SNP [dm6]	A	T	7.645e^-5	0.582	INTERGENIC
3L	6376326	3L_6376326_SNP [dm3] 3L_6383226_SNP [dm6]	C	T	7.698e^-5	0.582	INTERGENIC
3L	20833140	3L_20833140_SNP [dm3] 3L_20840040_SNP [dm6]	T	A	7.710e^-5	0.582	INTRON CSN3
3L	7356316	3L_7356316_SNP [dm3] 3L_7363216_SNP [dm6]	C	T	7.739e^-5	0.582	NON_SYNONYMOUS_CODING Sec63	TF binding site mE1_TFBS_chinmo
X	10852890	X_10852890_SNP [dm3] X_10958857_SNP [dm6]	A	C	7.886e^-5	0.582	INTRON Myo10A
3L	1533131	3L_1533131_SNP [dm3] 3L_1533131_SNP [dm6]	C	T	7.887e^-5	0.582	SYNONYMOUS_CODING CG12090	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14147707	3L_14147707_SNP [dm3] 3L_14154607_SNP [dm6]	G	T	7.917e^-5	0.582	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18135204	2R_18135204_SNP [dm3] 2R_22247699_SNP [dm6]	G	A	7.972e^-5	0.582	INTRON dve	regulatory region REDfly_CRMs
2L	10787461	2L_10787461_INS [dm3] 2L_10787461_INS [dm6]	T	TT	7.981e^-5	0.582	INTRON CG31869
2L	14223319	2L_14223319_SNP [dm3] 2L_14223319_SNP [dm6]	A	G	8.007e^-5	0.582	INTRON Dyrk2
2L	13863678	2L_13863678_SNP [dm3] 2L_13863678_SNP [dm6]	A	C	8.092e^-5	0.582	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15733653	3L_15733653_SNP [dm3] 3L_15740553_SNP [dm6]	G	A	8.097e^-5	0.582	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	14563110	3L_14563110_SNP [dm3] 3L_14570010_SNP [dm6]	G	C	8.152e^-5	0.582	INTERGENIC
2L	7935888	2L_7935888_SNP [dm3] 2L_7935888_SNP [dm6]	C	T	8.226e^-5	0.582	INTRON Snoo
3L	822049	3L_822049_DEL [dm3] 3L_822049_DEL [dm6]	GATATCTG	AC	8.260e^-5	0.582	DOWNSTREAM CR43883 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	7247202	3R_7247202_SNP [dm3] 3R_11421480_SNP [dm6]	C	T	8.317e^-5	0.582	SYNONYMOUS_CODING ninaG UPSTREAM CG5270	TF binding site mE1_TFBS_cad
2R	18142918	2R_18142918_SNP [dm3] 2R_22255413_SNP [dm6]	G	A	8.386e^-5	0.582	INTRON dve	TF binding site mE1_TFBS_sens
X	19632719	X_19632719_SNP [dm3] X_19738686_SNP [dm6]	T	G	8.407e^-5	0.582	UTR_3_PRIME CG14234
2L	4629844	2L_4629844_SNP [dm3] 2L_4629844_SNP [dm6]	T	C	8.474e^-5	0.582	INTERGENIC
3L	5598209	3L_5598209_SNP [dm3] 3L_5605109_SNP [dm6]	T	C	8.486e^-5	0.582	SYNONYMOUS_CODING mthl2
3R	3418661	3R_3418661_SNP [dm3] 3R_7592939_SNP [dm6]	C	T	8.495e^-5	0.582	INTRON CG34127
3L	6007502	3L_6007502_SNP [dm3] 3L_6014402_SNP [dm6]	G	A	8.598e^-5	0.582	INTRON PVRAP
2R	18051638	2R_18051638_SNP [dm3] 2R_22164133_SNP [dm6]	C	T	8.600e^-5	0.582	SYNONYMOUS_CODING CG34206 INTRON a
2L	13822658	2L_13822658_SNP [dm3] 2L_13822658_SNP [dm6]	G	A	8.656e^-5	0.582	INTRON b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13822662	2L_13822662_SNP [dm3] 2L_13822662_SNP [dm6]	T	C	8.656e^-5	0.582	INTRON b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14720487	X_14720487_SNP [dm3] X_14826454_SNP [dm6]	C	G	8.669e^-5	0.582	UPSTREAM rut DOWNSTREAM CG14408 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3529391	3L_3529391_SNP [dm3] 3L_3529391_SNP [dm6]	T	G	8.721e^-5	0.582	INTRON Eip63E
2R	16934596	2R_16934596_SNP [dm3] 2R_21047091_SNP [dm6]	G	C	8.741e^-5	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	3346247	3R_3346247_SNP [dm3] 3R_7520525_SNP [dm6]	C	T	8.744e^-5	0.582	SYNONYMOUS_CODING alpha-Est7	TF binding site mE1_TFBS_cad
2R	17780198	2R_17780198_SNP [dm3] 2R_21892693_SNP [dm6]	C	T	8.745e^-5	0.582	INTRON Fili
3R	13906300	3R_13906300_SNP [dm3] 3R_18080578_SNP [dm6]	C	A	8.754e^-5	0.582	UPSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9252845	3L_9252845_SNP [dm3] 3L_9259745_SNP [dm6]	T	C	8.815e^-5	0.582	INTRON GluRIB
3L	6306670	3L_6306670_SNP [dm3] 3L_6313570_SNP [dm6]	C	T	8.835e^-5	0.582	INTERGENIC
3L	5781325	3L_5781325_SNP [dm3] 3L_5788225_SNP [dm6]	G	A	8.860e^-5	0.582	INTERGENIC
2L	13822371	2L_13822371_INS [dm3] 2L_13822371_INS [dm6]	A	ATAATATTA	8.873e^-5	0.582	INTRON b
3L	4788804	3L_4788804_SNP [dm3] 3L_4788804_SNP [dm6]	T	C	8.884e^-5	0.582	INTRON RhoGEF64C	TF binding site mE1_TFBS_chinmo
3L	9026032	3L_9026032_SNP [dm3] 3L_9032932_SNP [dm6]	T	C	8.897e^-5	0.582	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	18217222	2L_18217222_SNP [dm3] 2L_18217222_SNP [dm6]	C	G	8.960e^-5	0.582	INTRON CG42750
3R	8905352	3R_8905352_SNP [dm3] 3R_13079630_SNP [dm6]	C	T	9.072e^-5	0.582	INTERGENIC
3R	11586586	3R_11586586_SNP [dm3] 3R_15760864_SNP [dm6]	T	G	9.121e^-5	0.582	INTERGENIC
2L	18211512	2L_18211512_SNP [dm3] 2L_18211512_SNP [dm6]	A	G	9.137e^-5	0.582	INTRON CG42750
X	5564183	X_5564183_SNP [dm3] X_5670150_SNP [dm6]	G	C	9.140e^-5	0.582	UTR_3_PRIME CG4119 DOWNSTREAM Rab18	TF binding site BDTNP1_TFBS_dl
3L	14972029	3L_14972029_SNP [dm3] 3L_14978929_SNP [dm6]	C	T	9.222e^-5	0.582	UPSTREAM CG3349 INTERGENIC
2L	13822634	2L_13822634_SNP [dm3] 2L_13822634_SNP [dm6]	T	G	9.240e^-5	0.582	INTRON b	TF binding site mE1_TFBS_cad
2R	12677033	2R_12677033_SNP [dm3] 2R_16789528_SNP [dm6]	A	G	9.281e^-5	0.582	SYNONYMOUS_CODING CG5522
2R	17780178	2R_17780178_SNP [dm3] 2R_21892673_SNP [dm6]	A	G	9.283e^-5	0.582	INTRON Fili
3L	17784872	3L_17784872_SNP [dm3] 3L_17791772_SNP [dm6]	C	T	9.303e^-5	0.582	UPSTREAM CG42815 DOWNSTREAM CG42816 INTERGENIC
2R	17235172	2R_17235172_SNP [dm3] 2R_21347667_SNP [dm6]	A	T	9.308e^-5	0.582	INTRON CG9822
X	3030287	X_3030287_SNP [dm3] X_3136254_SNP [dm6]	C	T	9.343e^-5	0.582	INTRON N	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	13822611	2L_13822611_SNP [dm3] 2L_13822611_SNP [dm6]	A	T	9.371e^-5	0.582	INTRON b
2L	13822626	2L_13822626_SNP [dm3] 2L_13822626_SNP [dm6]	A	G	9.371e^-5	0.582	INTRON b	TF binding site mE1_TFBS_cad
2L	13822639	2L_13822639_SNP [dm3] 2L_13822639_SNP [dm6]	C	A	9.371e^-5	0.582	INTRON b	TF binding site mE1_TFBS_cad
2L	13822642	2L_13822642_INS [dm3] 2L_13822642_INS [dm6]	A	AG	9.371e^-5	0.582	INTRON b	TF binding site mE1_TFBS_cad
2L	6100946	2L_6100946_SNP [dm3] 2L_6100946_SNP [dm6]	G	A	9.384e^-5	0.582	INTRON stai	TF binding site BDTNP1_TFBS_dl
X	3645034	X_3645034_SNP [dm3] X_3751001_SNP [dm6]	C	T	9.398e^-5	0.582	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6125464	2L_6125464_SNP [dm3] 2L_6125464_SNP [dm6]	G	T	9.441e^-5	0.582	SYNONYMOUS_CODING Arpc4 DOWNSTREAM stai & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sens
2R	18050257	2R_18050257_SNP [dm3] 2R_22162752_SNP [dm6]	C	A	9.511e^-5	0.582	DOWNSTREAM CG34206 INTRON a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	1656519	X_1656519_SNP [dm3] X_1762486_SNP [dm6]	G	A	9.546e^-5	0.582	INTERGENIC
2R	16720867	2R_16720867_SNP [dm3] 2R_20833362_SNP [dm6]	T	C	9.566e^-5	0.582	UPSTREAM sktl INTRON insc & 1 other	TF binding site BDTNP1_TFBS_dl
2R	2210489	2R_2210489_SNP [dm3] 2R_6322984_SNP [dm6]	C	A	9.586e^-5	0.582	INTERGENIC	transposable element FlyBase
2L	13822500	2L_13822500_SNP [dm3] 2L_13822500_SNP [dm6]	A	G	9.670e^-5	0.582	INTRON b
3L	2290235	3L_2290235_SNP [dm3] 3L_2290235_SNP [dm6]	G	A	9.700e^-5	0.582	INTRON MsR2
2L	9911839	2L_9911839_SNP [dm3] 2L_9911839_SNP [dm6]	G	T	9.722e^-5	0.582	INTRON Etl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	17235129	2R_17235129_SNP [dm3] 2R_21347624_SNP [dm6]	T	A	9.781e^-5	0.582	NON_SYNONYMOUS_CODING CG9822
2R	12819325	2R_12819325_SNP [dm3] 2R_16931820_SNP [dm6]	T	C	9.824e^-5	0.582	INTRON Pkc53E
X	15158005	X_15158005_SNP [dm3] X_15263972_SNP [dm6]	A	T	9.834e^-5	0.582	INTERGENIC
3L	2534046	3L_2534046_SNP [dm3] 3L_2534046_SNP [dm6]	G	A	9.877e^-5	0.582	INTRON Spn
2L	6249378	2L_6249378_SNP [dm3] 2L_6249378_SNP [dm6]	C	T	9.886e^-5	0.582	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18900004	2L_18900004_SNP [dm3] 2L_18900004_SNP [dm6]	T	A	9.923e^-5	0.582	EXON CR44739	TF binding site mE1_TFBS_cnc
2L	13822668	2L_13822668_SNP [dm3] 2L_13822668_SNP [dm6]	T	C	9.935e^-5	0.582	INTRON b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	22076857	2L_22076857_DEL [dm3] 2L_22076857_DEL [dm6]	TCA	T	9.957e^-5	0.582	INTERGENIC	transposable element FlyBase
3R	23481416	3R_23481416_SNP [dm3] 3R_27655694_SNP [dm6]	T	G	9.977e^-5	0.582	INTRON tau	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7219277	3L_7219277_SNP [dm3] 3L_7226177_SNP [dm6]	T	A	9.977e^-5	0.582	INTERGENIC
3L	12414317	3L_12414317_INS [dm3] 3L_12421217_INS [dm6]	A	AA	1.001e^-4	0.582	INTERGENIC
3L	2290808	3L_2290808_DEL [dm3] 3L_2290808_DEL [dm6]	TATTGT	C	1.012e^-4	0.582	INTRON MsR2
2L	2714490	2L_2714490_SNP [dm3] 2L_2714490_SNP [dm6]	C	G	1.012e^-4	0.582	INTRON CG31690
3L	14097813	3L_14097813_SNP [dm3] 3L_14104713_SNP [dm6]	A	C	1.012e^-4	0.582	SYNONYMOUS_CODING Sox21a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	7931219	X_7931219_SNP [dm3] X_8037186_SNP [dm6]	G	A	1.014e^-4	0.582	NON_SYNONYMOUS_CODING CG2233 DOWNSTREAM fs_1_h
3R	3428471	3R_3428471_SNP [dm3] 3R_7602749_SNP [dm6]	A	T	1.017e^-4	0.582	INTRON CG34127
3L	12856220	3L_12856220_SNP [dm3] 3L_12863120_SNP [dm6]	A	G	1.018e^-4	0.582	UPSTREAM CG10943 INTERGENIC
2R	16646484	2R_16646484_SNP [dm3] 2R_20758979_SNP [dm6]	T	C	1.018e^-4	0.582	INTERGENIC
2L	12574741	2L_12574741_SNP [dm3] 2L_12574741_SNP [dm6]	A	G	1.019e^-4	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	19219698	3L_19219698_SNP [dm3] 3L_19226598_SNP [dm6]	C	T	1.020e^-4	0.582	INTRON fz2
2R	17075523	2R_17075523_SNP [dm3] 2R_21188018_SNP [dm6]	T	C	1.024e^-4	0.582	SPLICE_SITE_REGION tud INTRON tud	TF binding site mE1_TFBS_sens
2R	11797695	2R_11797695_INS [dm3] 2R_15910190_INS [dm6]	T	TT	1.024e^-4	0.582	INTRON sli	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13913861	3R_13913861_SNP [dm3] 3R_18088139_SNP [dm6]	G	A	1.025e^-4	0.582	INTERGENIC
3R	25548438	3R_25548438_SNP [dm3] 3R_29722716_SNP [dm6]	T	C	1.026e^-4	0.582	SYNONYMOUS_CODING CG34296 UPSTREAM Pcd DOWNSTREAM CG15506	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2226014	2R_2226014_SNP [dm3] 2R_6338509_SNP [dm6]	A	T	1.029e^-4	0.582	INTERGENIC	transposable element FlyBase
2L	13603083	2L_13603083_SNP [dm3] 2L_13603083_SNP [dm6]	A	G	1.029e^-4	0.582	INTRON kuz
2L	17580124	2L_17580124_SNP [dm3] 2L_17580124_SNP [dm6]	A	T	1.037e^-4	0.582	DOWNSTREAM CR45698 INTERGENIC
3R	14060863	3R_14060863_SNP [dm3] 3R_18235141_SNP [dm6]	G	A	1.037e^-4	0.582	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	2213765	2R_2213765_SNP [dm3] 2R_6326260_SNP [dm6]	C	A	1.037e^-4	0.582	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
X	8249312	X_8249312_SNP [dm3] X_8355279_SNP [dm6]	A	G	1.038e^-4	0.582	INTRON nAChRalpha3
2R	17237375	2R_17237375_SNP [dm3] 2R_21349870_SNP [dm6]	T	C	1.040e^-4	0.582	INTRON CG17974
2R	802779	2R_802779_SNP [dm3] 2R_4915274_SNP [dm6]	G	A	1.044e^-4	0.582	INTERGENIC
X	4858589	X_4858589_SNP [dm3] X_4964556_SNP [dm6]	T	C	1.044e^-4	0.582	INTRON CR44833
2R	17780180	2R_17780180_SNP [dm3] 2R_21892675_SNP [dm6]	G	T	1.051e^-4	0.582	INTRON Fili
3R	11391128	3R_11391128_SNP [dm3] 3R_15565406_SNP [dm6]	A	T	1.052e^-4	0.582	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	17234442	2R_17234442_SNP [dm3] 2R_21346937_SNP [dm6]	A	T	1.056e^-4	0.582	NON_SYNONYMOUS_CODING CG9822
2L	7923975	2L_7923975_SNP [dm3] 2L_7923975_SNP [dm6]	G	A	1.058e^-4	0.582	INTRON Snoo
3L	14563210	3L_14563210_SNP [dm3] 3L_14570110_SNP [dm6]	G	T	1.065e^-4	0.582	INTERGENIC
3R	3425014	3R_3425014_SNP [dm3] 3R_7599292_SNP [dm6]	G	C	1.077e^-4	0.582	INTRON CG34127
2R	10709932	2R_10709932_INS [dm3] 2R_14822427_INS [dm6]	T	TGTGTCCTGT	1.079e^-4	0.582	INTERGENIC
3R	13908700	3R_13908700_SNP [dm3] 3R_18082978_SNP [dm6]	A	T	1.081e^-4	0.582	DOWNSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16701624	2R_16701624_SNP [dm3] 2R_20814119_SNP [dm6]	G	T	1.085e^-4	0.582	INTERGENIC
3L	10614970	3L_10614970_SNP [dm3] 3L_10621870_SNP [dm6]	T	C	1.089e^-4	0.582	INTERGENIC
2R	11959601	2R_11959601_SNP [dm3] 2R_16072096_SNP [dm6]	T	C	1.089e^-4	0.582	INTERGENIC
2R	18050224	2R_18050224_SNP [dm3] 2R_22162719_SNP [dm6]	C	G	1.099e^-4	0.582	INTRON a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1563517	3L_1563517_SNP [dm3] 3L_1563517_SNP [dm6]	A	T	1.105e^-4	0.582	INTRON CG7879
X	5569469	X_5569469_SNP [dm3] X_5675436_SNP [dm6]	G	T	1.106e^-4	0.582	NON_SYNONYMOUS_CODING Tre1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25463470	3R_25463470_SNP [dm3] 3R_29637748_SNP [dm6]	C	T	1.113e^-4	0.582	INTRON Dop1R2
3L	6318796	3L_6318796_SNP [dm3] 3L_6325696_SNP [dm6]	A	G	1.114e^-4	0.582	NON_SYNONYMOUS_CODING Or65b
2L	4204498	2L_4204498_SNP [dm3] 2L_4204498_SNP [dm6]	G	A	1.117e^-4	0.582	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_sens
3L	6304244	3L_6304244_SNP [dm3] 3L_6311144_SNP [dm6]	C	T	1.118e^-4	0.582	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14982804	2R_14982804_SNP [dm3] 2R_19095299_SNP [dm6]	T	A	1.124e^-4	0.582	SYNONYMOUS_CODING Ir56a INTRON 5-HT1A
3L	5323493	3L_5323493_SNP [dm3] 3L_5330393_SNP [dm6]	T	A	1.125e^-4	0.582	INTERGENIC
3L	16028041	3L_16028041_DEL [dm3] 3L_16034941_DEL [dm6]	GCAGT	G	1.125e^-4	0.582	UPSTREAM CG5895 DOWNSTREAM CG42716 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	6277072	3L_6277072_SNP [dm3] 3L_6283972_SNP [dm6]	C	A	1.126e^-4	0.582	INTERGENIC
3R	5120235	3R_5120235_SNP [dm3] 3R_9294513_SNP [dm6]	G	T	1.130e^-4	0.582	UTR_3_PRIME CG8861 DOWNSTREAM CG8861
3L	6998824	3L_6998824_SNP [dm3] 3L_7005724_SNP [dm6]	G	T	1.131e^-4	0.582	INTRON Mp
3L	18021721	3L_18021721_SNP [dm3] 3L_18028621_SNP [dm6]	T	C	1.132e^-4	0.582	INTRON Eip75B
2R	18146860	2R_18146860_SNP [dm3] 2R_22259355_SNP [dm6]	C	A	1.137e^-4	0.582	INTRON dve	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	2290228	3L_2290228_SNP [dm3] 3L_2290228_SNP [dm6]	T	A	1.139e^-4	0.582	INTRON MsR2
3L	14563127	3L_14563127_SNP [dm3] 3L_14570027_SNP [dm6]	C	A	1.140e^-4	0.582	INTERGENIC
2R	17065217	2R_17065217_SNP [dm3] 2R_21177712_SNP [dm6]	G	T	1.141e^-4	0.582	DOWNSTREAM CG4286 INTRON Pu	TF binding site mE1_TFBS_cad
3L	2290239	3L_2290239_DEL [dm3] 3L_2290239_DEL [dm6]	GCGCCAAA	G	1.145e^-4	0.582	INTRON MsR2
2L	7441312	2L_7441312_SNP [dm3] 2L_7441312_SNP [dm6]	T	C	1.147e^-4	0.582	UTR_5_PRIME CG5973 INTRON CG5973
3L	18021814	3L_18021814_SNP [dm3] 3L_18028714_SNP [dm6]	T	G	1.150e^-4	0.582	INTRON Eip75B
2R	18050570	2R_18050570_SNP [dm3] 2R_22163065_SNP [dm6]	A	C	1.154e^-4	0.582	NON_SYNONYMOUS_CODING a DOWNSTREAM CG34206	TF binding site mE1_TFBS_cad
X	8289689	X_8289689_SNP [dm3] X_8395656_SNP [dm6]	A	T	1.161e^-4	0.582	INTERGENIC
3L	5126873	3L_5126873_SNP [dm3] 3L_5133773_SNP [dm6]	G	A	1.162e^-4	0.582	UPSTREAM CG4603 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	11586587	3R_11586587_SNP [dm3] 3R_15760865_SNP [dm6]	T	G	1.165e^-4	0.582	INTERGENIC
3L	2290791	3L_2290791_DEL [dm3] 3L_2290791_DEL [dm6]	TGGGCTT	T	1.168e^-4	0.582	INTRON MsR2
2L	9911855	2L_9911855_SNP [dm3] 2L_9911855_SNP [dm6]	T	C	1.168e^-4	0.582	INTRON Etl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18273946	2R_18273946_SNP [dm3] 2R_22386441_SNP [dm6]	T	C	1.187e^-4	0.582	UTR_5_PRIME CG13506 UPSTREAM CR44757
2R	19602709	2R_19602709_SNP [dm3] 2R_23715186_SNP [dm6]	G	C	1.187e^-4	0.582	INTRON Sesn
2L	18218663	2L_18218663_SNP [dm3] 2L_18218663_SNP [dm6]	T	A	1.189e^-4	0.582	INTRON CG42750
3R	25373359	3R_25373359_SNP [dm3] 3R_29547637_SNP [dm6]	T	G	1.191e^-4	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12084748	3L_12084748_SNP [dm3] 3L_12091648_SNP [dm6]	C	T	1.193e^-4	0.582	INTERGENIC
3L	5394771	3L_5394771_SNP [dm3] 3L_5401671_SNP [dm6]	C	T	1.202e^-4	0.582	INTERGENIC
2R	991230	2R_991230_SNP [dm3] 2R_5103725_SNP [dm6]	C	T	1.206e^-4	0.582	INTERGENIC	transposable element FlyBase
3R	12376967	3R_12376967_SNP [dm3] 3R_16551245_SNP [dm6]	C	T	1.210e^-4	0.582	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4830289	3L_4830289_SNP [dm3] 3L_4830289_SNP [dm6]	T	G	1.211e^-4	0.582	SYNONYMOUS_CODING CG13708	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16985180	2R_16985180_SNP [dm3] 2R_21097675_SNP [dm6]	C	T	1.214e^-4	0.582	UPSTREAM CG34396 & 1 other INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5397271	2L_5397271_DEL [dm3] 2L_5397271_DEL [dm6]	AC	A	1.215e^-4	0.582	INTERGENIC
2L	7937633	2L_7937633_SNP [dm3] 2L_7937633_SNP [dm6]	G	C	1.216e^-4	0.582	INTRON Snoo
X	2828649	X_2828649_SNP [dm3] X_2934616_SNP [dm6]	A	T	1.223e^-4	0.582	UPSTREAM CG3592 INTRON kirre
3L	5983741	3L_5983741_SNP [dm3] 3L_5990641_SNP [dm6]	G	T	1.227e^-4	0.582	INTERGENIC
3L	4640955	3L_4640955_SNP [dm3] 3L_4640955_SNP [dm6]	C	A	1.228e^-4	0.582	INTRON axo
3L	18021592	3L_18021592_SNP [dm3] 3L_18028492_SNP [dm6]	C	A	1.231e^-4	0.582	INTRON Eip75B
2L	21896815	2L_21896815_SNP [dm3] 2L_21896815_SNP [dm6]	G	A	1.236e^-4	0.582	UTR_3_PRIME CG11629	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
2R	17619517	2R_17619517_SNP [dm3] 2R_21732012_SNP [dm6]	C	G	1.238e^-4	0.582	INTERGENIC
3L	6692759	3L_6692759_SNP [dm3] 3L_6699659_SNP [dm6]	G	C	1.238e^-4	0.582	INTRON SP1173
3L	3547752	3L_3547752_INS [dm3] 3L_3547752_INS [dm6]	A	AAA	1.238e^-4	0.582	INTRON Eip63E
2R	16246186	2R_16246186_SNP [dm3] 2R_20358681_SNP [dm6]	G	A	1.239e^-4	0.582	INTERGENIC
3R	4704807	3R_4704807_SNP [dm3] 3R_8879085_SNP [dm6]	G	A	1.244e^-4	0.582	INTRON pyd	TF binding site mE1_TFBS_inv
3L	6318842	3L_6318842_SNP [dm3] 3L_6325742_SNP [dm6]	T	A	1.248e^-4	0.582	INTRON Or65b
3L	3790963	3L_3790963_SNP [dm3] 3L_3790963_SNP [dm6]	G	C	1.249e^-4	0.582	INTRON CG32264 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17808150	2L_17808150_SNP [dm3] 2L_17808150_SNP [dm6]	C	A	1.250e^-4	0.582	INTRON CadN2
2R	17152248	2R_17152248_SNP [dm3] 2R_21264743_SNP [dm6]	T	C	1.251e^-4	0.582	DOWNSTREAM CG30391 INTRON Rgk3
3R	4127654	3R_4127654_SNP [dm3] 3R_8301932_SNP [dm6]	A	C	1.254e^-4	0.582	NON_SYNONYMOUS_CODING mRpL1 UPSTREAM CG9626 DOWNSTREAM nac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	19602736	2R_19602736_SNP [dm3] 2R_23715213_SNP [dm6]	T	C	1.254e^-4	0.582	INTRON Sesn
X	7925052	X_7925052_SNP [dm3] X_8031019_SNP [dm6]	C	T	1.259e^-4	0.582	INTERGENIC
2R	19397731	2R_19397731_SNP [dm3] 2R_23510208_SNP [dm6]	G	A	1.265e^-4	0.582	INTERGENIC
2R	19602699	2R_19602699_SNP [dm3] 2R_23715176_SNP [dm6]	G	C	1.265e^-4	0.582	INTRON Sesn
X	7931165	X_7931165_SNP [dm3] X_8037132_SNP [dm6]	T	G	1.265e^-4	0.582	NON_SYNONYMOUS_CODING CG2233 DOWNSTREAM fs_1_h
3L	19793029	3L_19793029_SNP [dm3] 3L_19799929_SNP [dm6]	A	T	1.269e^-4	0.582	NON_SYNONYMOUS_CODING CG14102 DOWNSTREAM HLH106 INTRON Ir76a
2R	17143984	2R_17143984_SNP [dm3] 2R_21256479_SNP [dm6]	G	T	1.270e^-4	0.582	INTRON Rgk3
3L	7097900	3L_7097900_SNP [dm3] 3L_7104800_SNP [dm6]	A	C	1.270e^-4	0.582	INTRON form3
X	11322851	X_11322851_SNP [dm3] X_11428818_SNP [dm6]	C	T	1.276e^-4	0.582	SYNONYMOUS_CODING Gs2	TF binding site mE1_TFBS_chinmo
3R	25372886	3R_25372886_SNP [dm3] 3R_29547164_SNP [dm6]	A	T	1.276e^-4	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	2290819	3L_2290819_SNP [dm3] 3L_2290819_SNP [dm6]	A	G	1.277e^-4	0.582	INTRON MsR2
3L	16509234	3L_16509234_DEL [dm3] 3L_16516134_DEL [dm6]	GGACTTAAAG	G	1.282e^-4	0.582	INTRON CG43373
X	13019196	X_13019196_SNP [dm3] X_13125163_SNP [dm6]	T	C	1.285e^-4	0.582	INTRON CG32638
2R	15686199	2R_15686199_SNP [dm3] 2R_19798694_SNP [dm6]	T	C	1.294e^-4	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3765948	2R_3765948_SNP [dm3] 2R_7878443_SNP [dm6]	A	G	1.297e^-4	0.582	INTRON Dgk
2L	15035457	2L_15035457_SNP [dm3] 2L_15035457_SNP [dm6]	T	C	1.298e^-4	0.582	UTR_5_PRIME yellow-c UPSTREAM yellow-c DOWNSTREAM GABA-B-R1 & 1 other
3L	1558641	3L_1558641_SNP [dm3] 3L_1558641_SNP [dm6]	T	A	1.299e^-4	0.582	UPSTREAM Pex10 & 1 other INTRON Pex10	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8289691	X_8289691_DEL [dm3] X_8395658_DEL [dm6]	CC	C	1.301e^-4	0.582	INTERGENIC
2L	4204477	2L_4204477_SNP [dm3] 2L_4204477_SNP [dm6]	A	G	1.304e^-4	0.582	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_sens
2L	7088614	2L_7088614_SNP [dm3] 2L_7088614_SNP [dm6]	A	G	1.305e^-4	0.582	INTERGENIC
X	2829565	X_2829565_SNP [dm3] X_2935532_SNP [dm6]	T	C	1.305e^-4	0.582	SYNONYMOUS_CODING CG3592 INTRON kirre
X	4070746	X_4070746_SNP [dm3] X_4176713_SNP [dm6]	T	C	1.312e^-4	0.582	INTRON Fas2
X	14720424	X_14720424_SNP [dm3] X_14826391_SNP [dm6]	A	G	1.315e^-4	0.582	UPSTREAM rut DOWNSTREAM CG14408 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18021706	3L_18021706_SNP [dm3] 3L_18028606_SNP [dm6]	C	T	1.321e^-4	0.582	INTRON Eip75B
3L	9548377	3L_9548377_SNP [dm3] 3L_9555277_SNP [dm6]	A	T	1.327e^-4	0.582	INTRON CG42673
3L	20857283	3L_20857283_SNP [dm3] 3L_20864183_SNP [dm6]	G	A	1.330e^-4	0.582	INTRON CG32432
2R	18889414	2R_18889414_SNP [dm3] 2R_23001891_SNP [dm6]	T	C	1.334e^-4	0.582	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	13862868	2L_13862868_SNP [dm3] 2L_13862868_SNP [dm6]	T	A	1.339e^-4	0.582	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	21846019	X_21846019_SNP [dm3] X_22444183_SNP [dm6]	T	G	1.345e^-4	0.582	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	15393575	2L_15393575_INS [dm3] 2L_15393575_INS [dm6]	C	CCC	1.346e^-4	0.582	INTERGENIC
3R	3380539	3R_3380539_SNP [dm3] 3R_7554817_SNP [dm6]	G	A	1.346e^-4	0.582	INTERGENIC
3L	9516172	3L_9516172_SNP [dm3] 3L_9523072_SNP [dm6]	A	G	1.349e^-4	0.582	INTRON CG33700
2R	19788160	2R_19788160_SNP [dm3] 2R_23900637_SNP [dm6]	C	T	1.351e^-4	0.582	SYNONYMOUS_CODING Lpt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5564165	X_5564165_SNP [dm3] X_5670132_SNP [dm6]	C	T	1.352e^-4	0.582	NON_SYNONYMOUS_CODING CG4119 DOWNSTREAM Rab18	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17792946	3L_17792946_SNP [dm3] 3L_17799846_SNP [dm6]	C	A	1.352e^-4	0.582	INTRON NUCB1	TF binding site BDTNP1_TFBS_twi
3L	7853679	3L_7853679_SNP [dm3] 3L_7860579_SNP [dm6]	A	T	1.357e^-4	0.582	INTRON Pdp1
2L	12747233	2L_12747233_SNP [dm3] 2L_12747233_SNP [dm6]	C	A	1.361e^-4	0.582	INTERGENIC
X	10852764	X_10852764_SNP [dm3] X_10958731_SNP [dm6]	T	G	1.362e^-4	0.582	INTRON Myo10A
3R	7140808	3R_7140808_SNP [dm3] 3R_11315086_SNP [dm6]	C	T	1.365e^-4	0.582	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8660816	2R_8660816_SNP [dm3] 2R_12773311_SNP [dm6]	T	C	1.368e^-4	0.582	INTERGENIC
3L	1558653	3L_1558653_SNP [dm3] 3L_1558653_SNP [dm6]	G	A	1.370e^-4	0.582	SPLICE_SITE_REGION Pex10 UPSTREAM Pex10 & 1 other INTRON Pex10	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1558658	3L_1558658_SNP [dm3] 3L_1558658_SNP [dm6]	G	A	1.370e^-4	0.582	SPLICE_SITE_REGION Pex10 UTR_5_PRIME Pex10 UPSTREAM Pex10 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17784873	3L_17784873_SNP [dm3] 3L_17791773_SNP [dm6]	C	T	1.370e^-4	0.582	UPSTREAM CG42815 DOWNSTREAM CG42816 INTERGENIC
3L	9516188	3L_9516188_SNP [dm3] 3L_9523088_SNP [dm6]	T	A	1.379e^-4	0.582	INTRON CG33700
3L	6339187	3L_6339187_SNP [dm3] 3L_6346087_SNP [dm6]	G	A	1.381e^-4	0.582	INTRON CG13300
3L	16399898	3L_16399898_DEL [dm3] 3L_16406798_DEL [dm6]	ATTGTT	A	1.381e^-4	0.582	INTRON fax	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	20908348	3L_20908348_SNP [dm3] 3L_20915248_SNP [dm6]	G	A	1.381e^-4	0.582	INTERGENIC
3L	9516173	3L_9516173_SNP [dm3] 3L_9523073_SNP [dm6]	G	C	1.384e^-4	0.582	INTRON CG33700
2L	18218666	2L_18218666_DEL [dm3] 2L_18218666_DEL [dm6]	ATTTTACTTTCCACATTTCT...	A	1.386e^-4	0.582	INTRON CG42750
2L	18220801	2L_18220801_SNP [dm3] 2L_18220801_SNP [dm6]	C	T	1.386e^-4	0.582	INTRON CG42750
2R	17260591	2R_17260591_SNP [dm3] 2R_21373086_SNP [dm6]	C	G	1.389e^-4	0.582	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5876337	3L_5876337_SNP [dm3] 3L_5883237_SNP [dm6]	T	C	1.393e^-4	0.582	SYNONYMOUS_CODING CG13287	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7810694	3L_7810694_SNP [dm3] 3L_7817594_SNP [dm6]	G	A	1.397e^-4	0.582	SYNONYMOUS_CODING Pdp1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19404891	2R_19404891_SNP [dm3] 2R_23517368_SNP [dm6]	T	C	1.398e^-4	0.582	INTERGENIC
2R	2213969	2R_2213969_SNP [dm3] 2R_6326464_SNP [dm6]	C	G	1.399e^-4	0.582	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
2L	1100615	2L_1100615_SNP [dm3] 2L_1100615_SNP [dm6]	G	A	1.405e^-4	0.582	INTRON CG4629
X	22136258	X_22136258_SNP [dm3] X_22734422_SNP [dm6]	T	C	1.409e^-4	0.582	INTRON CR44997
2L	6990011	2L_6990011_SNP [dm3] 2L_6990011_SNP [dm6]	T	G	1.410e^-4	0.582	INTRON uif
3R	17527471	3R_17527471_SNP [dm3] 3R_21701749_SNP [dm6]	G	A	1.412e^-4	0.582	INTRON CG31176
3L	9026227	3L_9026227_SNP [dm3] 3L_9033127_SNP [dm6]	C	A	1.416e^-4	0.582	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	18021589	3L_18021589_SNP [dm3] 3L_18028489_SNP [dm6]	G	A	1.417e^-4	0.582	INTRON Eip75B
3R	25373485	3R_25373485_SNP [dm3] 3R_29547763_SNP [dm6]	C	G	1.421e^-4	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18148263	2R_18148263_DEL [dm3] 2R_22260758_DEL [dm6]	GGTG	G	1.423e^-4	0.582	INTRON dve
3R	20661776	3R_20661776_SNP [dm3] 3R_24836054_SNP [dm6]	T	C	1.423e^-4	0.582	UPSTREAM sosie INTRON sosie EXON CR45216	TF binding site BDTNP1_TFBS_dl
X	18303046	X_18303046_SNP [dm3] X_18409013_SNP [dm6]	T	A	1.424e^-4	0.582	INTRON CG32549
3L	11186066	3L_11186066_SNP [dm3] 3L_11192966_SNP [dm6]	A	G	1.425e^-4	0.582	INTRON GlcAT-P
3L	11186079	3L_11186079_SNP [dm3] 3L_11192979_SNP [dm6]	A	G	1.425e^-4	0.582	INTRON GlcAT-P
3R	23815262	3R_23815262_SNP [dm3] 3R_27989540_SNP [dm6]	C	T	1.426e^-4	0.582	DOWNSTREAM CG4815 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	10787364	2L_10787364_DEL [dm3] 2L_10787364_DEL [dm6]	ACCATGTGCTTCGCACATA...	A	1.426e^-4	0.582	INTRON CG31869
2L	10787384	2L_10787384_SNP [dm3] 2L_10787384_SNP [dm6]	C	G	1.426e^-4	0.582	INTRON CG31869
2L	10787426	2L_10787426_SNP [dm3] 2L_10787426_SNP [dm6]	G	A	1.429e^-4	0.582	INTRON CG31869
2L	17703357	2L_17703357_SNP [dm3] 2L_17703357_SNP [dm6]	T	C	1.429e^-4	0.582	INTRON CadN	TF binding site mE1_TFBS_HSA
3L	18021368	3L_18021368_SNP [dm3] 3L_18028268_SNP [dm6]	A	T	1.431e^-4	0.582	INTRON Eip75B
3L	12414312	3L_12414312_SNP [dm3] 3L_12421212_SNP [dm6]	C	T	1.432e^-4	0.582	INTERGENIC
3R	3367904	3R_3367904_SNP [dm3] 3R_7542182_SNP [dm6]	G	T	1.436e^-4	0.582	UPSTREAM alpha-Est3 & 1 other INTRON alpha-Est2
2L	8325604	2L_8325604_SNP [dm3] 2L_8325604_SNP [dm6]	G	C	1.437e^-4	0.582	UPSTREAM CG7781 INTERGENIC
3L	14431735	3L_14431735_SNP [dm3] 3L_14438635_SNP [dm6]	A	T	1.438e^-4	0.582	INTRON bbg	TF binding site mE1_TFBS_inv
2L	13881052	2L_13881052_SNP [dm3] 2L_13881052_SNP [dm6]	G	A	1.442e^-4	0.582	INTRON CenG1A
2R	12392489	2R_12392489_SNP [dm3] 2R_16504984_SNP [dm6]	G	T	1.449e^-4	0.582	INTRON Sema-2a
3L	6318864	3L_6318864_SNP [dm3] 3L_6325764_SNP [dm6]	G	T	1.452e^-4	0.582	INTRON Or65b
2L	12541408	2L_12541408_INS [dm3] 2L_12541408_INS [dm6]	C	CTTCC	1.457e^-4	0.582	UPSTREAM bun INTRON bun
X	19054709	X_19054709_SNP [dm3] X_19160676_SNP [dm6]	A	T	1.470e^-4	0.582	INTRON RhoGAP18B	TF binding site mE1_TFBS_HSA
3L	10439002	3L_10439002_SNP [dm3] 3L_10445902_SNP [dm6]	G	T	1.472e^-4	0.582	INTERGENIC
2L	7942179	2L_7942179_SNP [dm3] 2L_7942179_SNP [dm6]	T	C	1.477e^-4	0.582	INTRON Snoo
3R	20661781	3R_20661781_SNP [dm3] 3R_24836059_SNP [dm6]	T	G	1.485e^-4	0.582	UPSTREAM sosie INTRON sosie EXON CR45216	TF binding site BDTNP1_TFBS_dl
3L	14140892	3L_14140892_SNP [dm3] 3L_14147792_SNP [dm6]	C	A	1.485e^-4	0.582	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	7812818	3L_7812818_INS [dm3] 3L_7819718_INS [dm6]	A	AA	1.485e^-4	0.582	INTRON Pdp1
3R	3448694	3R_3448694_SNP [dm3] 3R_7622972_SNP [dm6]	T	G	1.487e^-4	0.582	INTRON CG34127	TF binding site mE1_TFBS_inv
3L	4870589	3L_4870589_SNP [dm3] 3L_4870589_SNP [dm6]	A	G	1.489e^-4	0.582	INTRON CG17150	TF binding site BDTNP1_TFBS_sna
2L	13822519	2L_13822519_SNP [dm3] 2L_13822519_SNP [dm6]	C	T	1.500e^-4	0.582	INTRON b
2L	6101024	2L_6101024_SNP [dm3] 2L_6101024_SNP [dm6]	G	A	1.503e^-4	0.582	INTRON stai	TF binding site BDTNP1_TFBS_dl
3L	4787337	3L_4787337_SNP [dm3] 3L_4787337_SNP [dm6]	G	T	1.506e^-4	0.582	INTRON RhoGEF64C
2L	11122539	2L_11122539_SNP [dm3] 2L_11122539_SNP [dm6]	T	A	1.509e^-4	0.582	UPSTREAM CG14921 DOWNSTREAM Csl4 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6318841	3L_6318841_SNP [dm3] 3L_6325741_SNP [dm6]	T	A	1.512e^-4	0.582	INTRON Or65b
3R	3438347	3R_3438347_SNP [dm3] 3R_7612625_SNP [dm6]	A	T	1.513e^-4	0.582	INTRON CG34127
3L	12084742	3L_12084742_SNP [dm3] 3L_12091642_SNP [dm6]	C	G	1.516e^-4	0.582	INTERGENIC
2L	10563249	2L_10563249_SNP [dm3] 2L_10563249_SNP [dm6]	C	T	1.521e^-4	0.582	INTRON Trim9	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15334480	2L_15334480_SNP [dm3] 2L_15334480_SNP [dm6]	C	A	1.522e^-4	0.582	SYNONYMOUS_CODING esg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	22361945	2L_22361945_SNP [dm3] 2L_22361945_SNP [dm6]	A	C	1.527e^-4	0.582	INTRON CG17018
X	6282812	X_6282812_SNP [dm3] X_6388779_SNP [dm6]	A	G	1.530e^-4	0.582	INTERGENIC
2L	7859685	2L_7859685_SNP [dm3] 2L_7859685_SNP [dm6]	A	G	1.532e^-4	0.582	UTR_3_PRIME lectin-28C INTRON TwdlE	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3392586	3R_3392586_SNP [dm3] 3R_7566864_SNP [dm6]	C	A	1.532e^-4	0.582	INTERGENIC
2R	18151129	2R_18151129_SNP [dm3] 2R_22263624_SNP [dm6]	A	G	1.532e^-4	0.582	INTRON dve
3R	3483209	3R_3483209_SNP [dm3] 3R_7657487_SNP [dm6]	T	A	1.537e^-4	0.582	UPSTREAM Nlg1 INTERGENIC
3L	1098401	3L_1098401_SNP [dm3] 3L_1098401_SNP [dm6]	T	C	1.541e^-4	0.582	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	14563172	3L_14563172_SNP [dm3] 3L_14570072_SNP [dm6]	T	A	1.553e^-4	0.582	INTERGENIC
3L	14155442	3L_14155442_SNP [dm3] 3L_14162342_SNP [dm6]	G	T	1.573e^-4	0.582	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	16821044	3L_16821044_SNP [dm3] 3L_16827944_SNP [dm6]	A	T	1.574e^-4	0.582	INTRON CG13024	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26722685	3R_26722685_SNP [dm3] 3R_30896963_SNP [dm6]	T	C	1.575e^-4	0.582	INTRON Cyp4c3
2L	9911655	2L_9911655_SNP [dm3] 2L_9911655_SNP [dm6]	T	C	1.580e^-4	0.582	SYNONYMOUS_CODING Etl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	677700	3L_677700_SNP [dm3] 3L_677700_SNP [dm6]	T	A	1.584e^-4	0.582	DOWNSTREAM CG17129 INTERGENIC
X	3051109	X_3051109_SNP [dm3] X_3157076_SNP [dm6]	C	G	1.586e^-4	0.582	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna
2L	13707554	2L_13707554_SNP [dm3] 2L_13707554_SNP [dm6]	C	G	1.589e^-4	0.582	UPSTREAM CG7311 INTRON CG31814
3R	3462592	3R_3462592_SNP [dm3] 3R_7636870_SNP [dm6]	A	G	1.590e^-4	0.582	INTRON CG34127
X	9849284	X_9849284_SNP [dm3] X_9955251_SNP [dm6]	A	C	1.590e^-4	0.582	INTERGENIC
2L	9073783	2L_9073783_SNP [dm3] 2L_9073783_SNP [dm6]	T	A	1.593e^-4	0.582	INTERGENIC
X	3322853	X_3322853_SNP [dm3] X_3428820_SNP [dm6]	A	C	1.594e^-4	0.582	INTRON CR44999 & 1 other	transposable element FlyBase
3R	3351833	3R_3351833_SNP [dm3] 3R_7526111_SNP [dm6]	T	C	1.596e^-4	0.582	UPSTREAM alpha-Est4aPsi INTRON alpha-Est6
3R	5727434	3R_5727434_DEL [dm3] 3R_9901712_DEL [dm6]	TGT	T	1.597e^-4	0.582	INTRON Glut4EF
3L	3547744	3L_3547744_SNP [dm3] 3L_3547744_SNP [dm6]	A	T	1.603e^-4	0.582	INTRON Eip63E
2R	17421831	2R_17421831_DEL [dm3] 2R_21534326_DEL [dm6]	ATTACATTTGA...	T	1.610e^-4	0.582	INTRON Egfr	TF binding site BDTNP1_TFBS_prd
2R	19390250	2R_19390250_SNP [dm3] 2R_23502727_SNP [dm6]	C	T	1.610e^-4	0.582	UPSTREAM CG13559 INTERGENIC	TF binding site mE1_TFBS_inv
2R	19602819	2R_19602819_SNP [dm3] 2R_23715296_SNP [dm6]	C	A	1.610e^-4	0.582	INTRON Sesn
2L	16166172	2L_16166172_SNP [dm3] 2L_16166172_SNP [dm6]	C	A	1.615e^-4	0.582	INTRON Ca-alpha1D
X	14720332	X_14720332_SNP [dm3] X_14826299_SNP [dm6]	G	A	1.615e^-4	0.582	UPSTREAM rut DOWNSTREAM CG14408 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	15680481	X_15680481_SNP [dm3] X_15786448_SNP [dm6]	G	T	1.622e^-4	0.582	NON_SYNONYMOUS_CODING mRpS30 UPSTREAM Paf-AHalpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5564214	X_5564214_SNP [dm3] X_5670181_SNP [dm6]	A	G	1.624e^-4	0.582	UTR_3_PRIME CG4119 DOWNSTREAM Rab18
3L	13591367	3L_13591367_DEL [dm3] 3L_13598267_DEL [dm6]	AGGAGCATGAGGATGCATGC...	C	1.625e^-4	0.582	UPSTREAM CR45120 INTRON bru-3
3R	3490974	3R_3490974_SNP [dm3] 3R_7665252_SNP [dm6]	T	C	1.626e^-4	0.582	INTRON Nlg1
3L	20848173	3L_20848173_SNP [dm3] 3L_20855073_SNP [dm6]	C	T	1.628e^-4	0.582	INTRON CG32432	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14460462	2R_14460462_SNP [dm3] 2R_18572957_SNP [dm6]	A	C	1.632e^-4	0.582	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14150519	3L_14150519_SNP [dm3] 3L_14157419_SNP [dm6]	T	A	1.635e^-4	0.582	INTERGENIC	regulatory region REDfly_CRMs
3L	20845712	3L_20845712_SNP [dm3] 3L_20852612_SNP [dm6]	C	T	1.636e^-4	0.582	SYNONYMOUS_CODING CG32432
2L	21940830	2L_21940830_SNP [dm3] 2L_21940830_SNP [dm6]	C	A	1.639e^-4	0.582	INTERGENIC
2R	10277970	2R_10277970_INS [dm3] 2R_14390465_INS [dm6]	T	TT	1.645e^-4	0.582	UPSTREAM CG10104 INTERGENIC
X	7960909	X_7960909_SNP [dm3] X_8066876_SNP [dm6]	A	C	1.649e^-4	0.582	INTRON mys
2R	11734134	2R_11734134_SNP [dm3] 2R_15846629_SNP [dm6]	C	T	1.650e^-4	0.582	INTRON tun & 1 other	TF binding site mE1_TFBS_sens
2R	17243556	2R_17243556_SNP [dm3] 2R_21356051_SNP [dm6]	G	A	1.654e^-4	0.582	SYNONYMOUS_CODING cv-2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	22017439	2L_22017439_SNP [dm3] 2L_22017439_SNP [dm6]	A	G	1.657e^-4	0.582	DOWNSTREAM CG31693 INTERGENIC
3L	3866575	3L_3866575_SNP [dm3] 3L_3866575_SNP [dm6]	T	A	1.657e^-4	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	3348514	3R_3348514_SNP [dm3] 3R_7522792_SNP [dm6]	T	G	1.657e^-4	0.582	INTRON alpha-Est7
X	7931162	X_7931162_SNP [dm3] X_8037129_SNP [dm6]	T	G	1.662e^-4	0.582	NON_SYNONYMOUS_CODING CG2233 DOWNSTREAM fs_1_h
2L	8311191	2L_8311191_SNP [dm3] 2L_8311191_SNP [dm6]	A	G	1.663e^-4	0.582	UTR_5_PRIME CG7810 UPSTREAM CG7806	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3L	10068022	3L_10068022_SNP [dm3] 3L_10074922_SNP [dm6]	A	G	1.666e^-4	0.582	INTRON dpr6
2L	12574661	2L_12574661_SNP [dm3] 2L_12574661_SNP [dm6]	C	T	1.689e^-4	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	14215816	2L_14215816_SNP [dm3] 2L_14215816_SNP [dm6]	G	A	1.693e^-4	0.582	INTRON Dyrk2	TF binding site mE1_TFBS_inv
2L	5745237	2L_5745237_SNP [dm3] 2L_5745237_SNP [dm6]	T	C	1.695e^-4	0.582	UPSTREAM CG11029 INTRON CG11030
2L	11379132	2L_11379132_SNP [dm3] 2L_11379132_SNP [dm6]	G	A	1.700e^-4	0.582	INTERGENIC	regulatory region REDfly_CRMs
2L	2259322	2L_2259322_SNP [dm3] 2L_2259322_SNP [dm6]	C	T	1.703e^-4	0.582	DOWNSTREAM CR44788 INTERGENIC
3L	11568511	3L_11568511_SNP [dm3] 3L_11575411_SNP [dm6]	A	G	1.708e^-4	0.582	SYNONYMOUS_CODING CG33489 UPSTREAM CG33490	TF binding site mE1_TFBS_cad
X	6282814	X_6282814_SNP [dm3] X_6388781_SNP [dm6]	T	G	1.708e^-4	0.582	INTERGENIC
2R	10668099	2R_10668099_SNP [dm3] 2R_14780594_SNP [dm6]	T	C	1.712e^-4	0.582	INTRON kn	TF binding site mE1_TFBS_HSA
2L	21901015	2L_21901015_SNP [dm3] 2L_21901015_SNP [dm6]	C	G	1.714e^-4	0.582	INTERGENIC
2R	5082333	2R_5082333_SNP [dm3] 2R_9194828_SNP [dm6]	G	T	1.714e^-4	0.582	UPSTREAM unpg INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	18218548	2L_18218548_DEL [dm3] 2L_18218548_DEL [dm6]	GG	G	1.721e^-4	0.582	INTRON CG42750
X	5564018	X_5564018_SNP [dm3] X_5669985_SNP [dm6]	C	T	1.724e^-4	0.582	DOWNSTREAM Rab18 INTRON CG4119	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3455989	3R_3455989_SNP [dm3] 3R_7630267_SNP [dm6]	G	A	1.725e^-4	0.582	INTRON CG34127
3R	24564590	3R_24564590_SNP [dm3] 3R_28738868_SNP [dm6]	G	A	1.727e^-4	0.582	INTRON AstA-R2
2R	17065214	2R_17065214_SNP [dm3] 2R_21177709_SNP [dm6]	T	A	1.729e^-4	0.582	DOWNSTREAM CG4286 INTRON Pu	TF binding site mE1_TFBS_cad
3R	3354347	3R_3354347_SNP [dm3] 3R_7528625_SNP [dm6]	C	G	1.731e^-4	0.582	SYNONYMOUS_CODING alpha-Est6 DOWNSTREAM Rtnl2 & 1 other
3L	10074568	3L_10074568_SNP [dm3] 3L_10081468_SNP [dm6]	G	C	1.734e^-4	0.582	INTRON dpr6
2L	6120622	2L_6120622_SNP [dm3] 2L_6120622_SNP [dm6]	C	A	1.738e^-4	0.582	UPSTREAM stai DOWNSTREAM CG31642 INTRON stai
3R	26899515	3R_26899515_SNP [dm3] 3R_31073793_SNP [dm6]	T	G	1.738e^-4	0.582	INTRON Sox100B
3R	3425808	3R_3425808_SNP [dm3] 3R_7600086_SNP [dm6]	C	G	1.738e^-4	0.582	INTRON CG34127
2L	11379658	2L_11379658_SNP [dm3] 2L_11379658_SNP [dm6]	G	A	1.739e^-4	0.582	INTERGENIC	regulatory region REDfly_CRMs
3L	2186307	3L_2186307_SNP [dm3] 3L_2186307_SNP [dm6]	T	A	1.739e^-4	0.582	SYNONYMOUS_CODING CG13810	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19601287	X_19601287_SNP [dm3] X_19707254_SNP [dm6]	C	T	1.742e^-4	0.582	SYNONYMOUS_CODING meso18E DOWNSTREAM CG14230	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17157388	2R_17157388_SNP [dm3] 2R_21269883_SNP [dm6]	A	G	1.751e^-4	0.582	INTRON Rgk3
3L	968092	3L_968092_SNP [dm3] 3L_968092_SNP [dm6]	C	T	1.751e^-4	0.582	INTRON Glut1
2L	17662250	2L_17662250_SNP [dm3] 2L_17662250_SNP [dm6]	G	C	1.752e^-4	0.582	SYNONYMOUS_CODING CadN
3L	6339111	3L_6339111_SNP [dm3] 3L_6346011_SNP [dm6]	C	T	1.753e^-4	0.582	INTRON CG13300	TF binding site mE1_TFBS_Kr
2L	4245053	2L_4245053_SNP [dm3] 2L_4245053_SNP [dm6]	C	T	1.759e^-4	0.582	INTERGENIC
3L	14563119	3L_14563119_SNP [dm3] 3L_14570019_SNP [dm6]	T	A	1.759e^-4	0.582	INTERGENIC
3L	12414348	3L_12414348_SNP [dm3] 3L_12421248_SNP [dm6]	G	C	1.767e^-4	0.582	INTERGENIC
3L	4866110	3L_4866110_SNP [dm3] 3L_4866110_SNP [dm6]	C	T	1.767e^-4	0.582	INTRON CG17150	TF binding site mE1_TFBS_inv
3L	5514239	3L_5514239_SNP [dm3] 3L_5521139_SNP [dm6]	G	T	1.768e^-4	0.582	INTRON Lkr
3R	4083649	3R_4083649_SNP [dm3] 3R_8257927_SNP [dm6]	G	C	1.768e^-4	0.582	INTRON mtg	TF binding site mE1_TFBS_inv
3L	6321402	3L_6321402_SNP [dm3] 3L_6328302_SNP [dm6]	A	G	1.770e^-4	0.582	NON_SYNONYMOUS_CODING Or65c
X	3430084	X_3430084_SNP [dm3] X_3536051_SNP [dm6]	T	C	1.778e^-4	0.582	INTRON CG32791
3L	18021584	3L_18021584_SNP [dm3] 3L_18028484_SNP [dm6]	T	A	1.780e^-4	0.582	INTRON Eip75B
2L	14075864	2L_14075864_SNP [dm3] 2L_14075864_SNP [dm6]	T	C	1.780e^-4	0.582	INTRON nAChRalpha5	TF binding site mE1_TFBS_chinmo
2R	18162788	2R_18162788_SNP [dm3] 2R_22275283_SNP [dm6]	A	G	1.784e^-4	0.582	INTRON dve	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	20958493	3L_20958493_SNP [dm3] 3L_20965393_SNP [dm6]	C	G	1.785e^-4	0.582	NON_SYNONYMOUS_CODING CG12983 UTR_3_PRIME CG12983
2R	2198160	2R_2198160_SNP [dm3] 2R_6310655_SNP [dm6]	G	T	1.787e^-4	0.582	INTERGENIC	transposable element FlyBase
3L	14141764	3L_14141764_SNP [dm3] 3L_14148664_SNP [dm6]	T	C	1.788e^-4	0.582	INTERGENIC	regulatory region REDfly_CRMs
3R	25419904	3R_25419904_SNP [dm3] 3R_29594182_SNP [dm6]	G	T	1.792e^-4	0.582	INTRON alph	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	8173150	X_8173150_INS [dm3] X_8279117_INS [dm6]	C	CTCAATACTTAGGC...	1.799e^-4	0.582	UTR_3_PRIME nAChRalpha3
3R	3397875	3R_3397875_SNP [dm3] 3R_7572153_SNP [dm6]	A	T	1.801e^-4	0.582	UTR_3_PRIME CG34127
2R	18889393	2R_18889393_SNP [dm3] 2R_23001870_SNP [dm6]	G	A	1.802e^-4	0.582	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	11380582	2L_11380582_MNP [dm3] 2L_11380582_MNP [dm6]	CAT	GCA	1.807e^-4	0.582	INTERGENIC	regulatory region REDfly_CRMs
2R	16707664	2R_16707664_SNP [dm3] 2R_20820159_SNP [dm6]	C	T	1.808e^-4	0.582	INTERGENIC
3L	2187058	3L_2187058_SNP [dm3] 3L_2187058_SNP [dm6]	A	C	1.809e^-4	0.582	SYNONYMOUS_CODING CG13810	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8225217	3L_8225217_SNP [dm3] 3L_8232117_SNP [dm6]	G	A	1.811e^-4	0.582	SYNONYMOUS_CODING CG7213 DOWNSTREAM CR43953
3L	12084611	3L_12084611_SNP [dm3] 3L_12091511_SNP [dm6]	T	G	1.817e^-4	0.582	INTERGENIC
2R	19390248	2R_19390248_SNP [dm3] 2R_23502725_SNP [dm6]	G	T	1.820e^-4	0.582	UPSTREAM CG13559 INTERGENIC	TF binding site mE1_TFBS_inv
3L	18021678	3L_18021678_SNP [dm3] 3L_18028578_SNP [dm6]	A	C	1.827e^-4	0.582	INTRON Eip75B
X	11183739	X_11183739_SNP [dm3] X_11289706_SNP [dm6]	G	A	1.840e^-4	0.582	INTRON CG44422
X	19433237	X_19433237_SNP [dm3] X_19539204_SNP [dm6]	G	A	1.843e^-4	0.582	INTRON CG32532
3L	5394892	3L_5394892_SNP [dm3] 3L_5401792_SNP [dm6]	G	T	1.844e^-4	0.582	INTERGENIC
2L	9911817	2L_9911817_SNP [dm3] 2L_9911817_SNP [dm6]	T	G	1.847e^-4	0.582	INTRON Etl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	14204517	3L_14204517_SNP [dm3] 3L_14211417_SNP [dm6]	T	A	1.849e^-4	0.582	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	7937550	2L_7937550_SNP [dm3] 2L_7937550_SNP [dm6]	A	G	1.849e^-4	0.582	INTRON Snoo
3L	8940559	3L_8940559_SNP [dm3] 3L_8947459_SNP [dm6]	C	A	1.852e^-4	0.582	INTRON CG43783 & 1 other
3R	3498130	3R_3498130_SNP [dm3] 3R_7672408_SNP [dm6]	C	G	1.854e^-4	0.582	INTRON Nlg1
2R	16684867	2R_16684867_INS [dm3] 2R_20797362_INS [dm6]	A	AA	1.857e^-4	0.582	INTERGENIC	TF binding site mE1_TFBS_cad
3L	14433684	3L_14433684_SNP [dm3] 3L_14440584_SNP [dm6]	C	T	1.858e^-4	0.582	INTRON bbg
2L	7067580	2L_7067580_SNP [dm3] 2L_7067580_SNP [dm6]	T	G	1.860e^-4	0.582	UPSTREAM CG11289 INTERGENIC
X	5791537	X_5791537_SNP [dm3] X_5897504_SNP [dm6]	G	A	1.865e^-4	0.582	INTRON CR45668	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18932908	3L_18932908_SNP [dm3] 3L_18939808_SNP [dm6]	T	C	1.868e^-4	0.582	INTRON CG32204
2L	7388356	2L_7388356_SNP [dm3] 2L_7388356_SNP [dm6]	T	G	1.868e^-4	0.582	UPSTREAM gudu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	17110474	2R_17110474_SNP [dm3] 2R_21222969_SNP [dm6]	C	T	1.871e^-4	0.582	INTRON ASPP	TF binding site mE1_TFBS_cad
X	15382050	X_15382050_SNP [dm3] X_15488017_SNP [dm6]	G	A	1.873e^-4	0.582	INTRON Gmap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10828894	2L_10828894_SNP [dm3] 2L_10828894_SNP [dm6]	A	T	1.877e^-4	0.582	INTRON Nos
3R	1457071	3R_1457071_SNP [dm3] 3R_5631349_SNP [dm6]	A	G	1.878e^-4	0.582	SYNONYMOUS_CODING CG31551 UPSTREAM CG31549
3L	5876139	3L_5876139_SNP [dm3] 3L_5883039_SNP [dm6]	G	A	1.883e^-4	0.582	SYNONYMOUS_CODING CG13287	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	3390841	3R_3390841_SNP [dm3] 3R_7565119_SNP [dm6]	G	T	1.895e^-4	0.582	INTERGENIC
2R	4070843	2R_4070843_SNP [dm3] 2R_8183338_SNP [dm6]	A	G	1.895e^-4	0.582	INTRON LRP1
3R	17528352	3R_17528352_SNP [dm3] 3R_21702630_SNP [dm6]	C	A	1.896e^-4	0.582	INTRON CG31176
2L	18218748	2L_18218748_SNP [dm3] 2L_18218748_SNP [dm6]	G	T	1.904e^-4	0.582	INTRON CG42750
3L	5390363	3L_5390363_SNP [dm3] 3L_5397263_SNP [dm6]	G	A	1.904e^-4	0.582	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	3004072	3L_3004072_DEL [dm3] 3L_3004072_DEL [dm6]	ACATTCA	A	1.907e^-4	0.582	INTRON FMRFaR
3R	25806552	3R_25806552_SNP [dm3] 3R_29980830_SNP [dm6]	T	C	1.917e^-4	0.582	INTERGENIC
2R	3384971	2R_3384971_SNP [dm3] 2R_7497466_SNP [dm6]	C	T	1.918e^-4	0.582	UPSTREAM CG1620 INTRON dpa	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	6183744	3L_6183744_SNP [dm3] 3L_6190644_SNP [dm6]	A	G	1.926e^-4	0.582	SYNONYMOUS_CODING CG7386	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9911658	2L_9911658_SNP [dm3] 2L_9911658_SNP [dm6]	C	T	1.926e^-4	0.582	SYNONYMOUS_CODING Etl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	2186322	3L_2186322_SNP [dm3] 3L_2186322_SNP [dm6]	T	G	1.928e^-4	0.582	SYNONYMOUS_CODING CG13810	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1354688	2L_1354688_SNP [dm3] 2L_1354688_SNP [dm6]	T	G	1.932e^-4	0.582	SYNONYMOUS_CODING CG31924 UPSTREAM CG5561 DOWNSTREAM CG5565
3R	23777355	3R_23777355_SNP [dm3] 3R_27951633_SNP [dm6]	C	T	1.933e^-4	0.582	SYNONYMOUS_CODING Gp93 DOWNSTREAM CG4951	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17852494	2L_17852494_SNP [dm3] 2L_17852494_SNP [dm6]	C	T	1.936e^-4	0.582	INTRON CadN2
3R	13907007	3R_13907007_SNP [dm3] 3R_18081285_SNP [dm6]	A	T	1.938e^-4	0.582	SYNONYMOUS_CODING CG14317	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8727419	X_8727419_DEL [dm3] X_8833386_DEL [dm6]	TC	G	1.940e^-4	0.582	INTERGENIC
2R	16678318	2R_16678318_SNP [dm3] 2R_20790813_SNP [dm6]	T	C	1.944e^-4	0.582	SYNONYMOUS_CODING CG43677 UPSTREAM CG43667 DOWNSTREAM CG43668
2R	11798565	2R_11798565_SNP [dm3] 2R_15911060_SNP [dm6]	A	T	1.948e^-4	0.582	INTRON sli	TF binding site mE1_TFBS_HSA
3R	23385985	3R_23385985_SNP [dm3] 3R_27560263_SNP [dm6]	G	A	1.953e^-4	0.582	DOWNSTREAM snmRNA:157 INTRON CG5646	TF binding site mE1_TFBS_chinmo
3R	25547320	3R_25547320_SNP [dm3] 3R_29721598_SNP [dm6]	A	C	1.953e^-4	0.582	UPSTREAM CG34296 INTRON CG15506	TF binding site mE1_TFBS_chinmo
3L	822074	3L_822074_SNP [dm3] 3L_822074_SNP [dm6]	A	T	1.956e^-4	0.582	DOWNSTREAM CR43883 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17097183	2R_17097183_SNP [dm3] 2R_21209678_SNP [dm6]	T	C	1.960e^-4	0.582	UTR_3_PRIME Glycogenin INTRON CG44245 & 1 other
2R	17457637	2R_17457637_SNP [dm3] 2R_21570132_SNP [dm6]	T	A	1.961e^-4	0.582	INTRON CG10440
3L	2186316	3L_2186316_SNP [dm3] 3L_2186316_SNP [dm6]	T	C	1.964e^-4	0.582	SYNONYMOUS_CODING CG13810	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4678908	2R_4678908_SNP [dm3] 2R_8791403_SNP [dm6]	G	T	1.965e^-4	0.582	INTERGENIC
2L	1377808	2L_1377808_SNP [dm3] 2L_1377808_SNP [dm6]	T	C	1.992e^-4	0.582	INTERGENIC
2L	13863419	2L_13863419_SNP [dm3] 2L_13863419_SNP [dm6]	G	A	2.005e^-4	0.582	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	4582116	3L_4582116_SNP [dm3] 3L_4582116_SNP [dm6]	G	A	2.005e^-4	0.582	INTRON CG42540	TF binding site BDTNP1_TFBS_dl
2L	18215348	2L_18215348_DEL [dm3] 2L_18215348_DEL [dm6]	AA	T	2.005e^-4	0.582	INTRON CG42750
3L	2533901	3L_2533901_SNP [dm3] 3L_2533901_SNP [dm6]	A	C	2.008e^-4	0.582	INTRON Spn
3L	2533909	3L_2533909_SNP [dm3] 3L_2533909_SNP [dm6]	T	A	2.008e^-4	0.582	INTRON Spn
3L	2533911	3L_2533911_SNP [dm3] 3L_2533911_SNP [dm6]	A	T	2.008e^-4	0.582	INTRON Spn
2L	7127046	2L_7127046_SNP [dm3] 2L_7127046_SNP [dm6]	A	T	2.015e^-4	0.582	INTRON Pvf3
3R	25546306	3R_25546306_SNP [dm3] 3R_29720584_SNP [dm6]	A	G	2.017e^-4	0.582	INTRON CG15506
3R	25875938	3R_25875938_SNP [dm3] 3R_30050216_SNP [dm6]	T	C	2.040e^-4	0.582	INTRON CG15528 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8095854	3L_8095854_SNP [dm3] 3L_8102754_SNP [dm6]	C	T	2.040e^-4	0.582	INTRON Ect4	TF binding site mE1_TFBS_cad
2R	18699185	2R_18699185_SNP [dm3] 2R_22811680_SNP [dm6]	G	C	2.042e^-4	0.582	INTRON stl
2L	12119880	2L_12119880_SNP [dm3] 2L_12119880_SNP [dm6]	G	C	2.045e^-4	0.582	INTRON CG17211
2R	17979356	2R_17979356_SNP [dm3] 2R_22091851_SNP [dm6]	G	A	2.046e^-4	0.582	SYNONYMOUS_CODING CG11073 UPSTREAM CG44163	TF binding site mE1_TFBS_chinmo
3R	5727398	3R_5727398_SNP [dm3] 3R_9901676_SNP [dm6]	T	C	2.046e^-4	0.582	INTRON Glut4EF
X	15391719	X_15391719_SNP [dm3] X_15497686_SNP [dm6]	A	G	2.047e^-4	0.582	INTRON Gmap EXON CR44888	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	3431797	3R_3431797_SNP [dm3] 3R_7606075_SNP [dm6]	C	G	2.048e^-4	0.582	INTRON CG34127
3R	12738348	3R_12738348_SNP [dm3] 3R_16912626_SNP [dm6]	C	T	2.055e^-4	0.582	INTRON iab-8
3L	14197454	3L_14197454_SNP [dm3] 3L_14204354_SNP [dm6]	G	A	2.056e^-4	0.582	DOWNSTREAM CG32141 INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	7231161	X_7231161_SNP [dm3] X_7337128_SNP [dm6]	G	T	2.060e^-4	0.582	UPSTREAM CBP INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	15382073	X_15382073_SNP [dm3] X_15488040_SNP [dm6]	C	T	2.060e^-4	0.582	INTRON Gmap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13819603	2L_13819603_SNP [dm3] 2L_13819603_SNP [dm6]	C	T	2.063e^-4	0.582	UTR_3_PRIME Sos	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	16313614	3L_16313614_SNP [dm3] 3L_16320514_SNP [dm6]	T	A	2.066e^-4	0.582	UPSTREAM CG13041 & 1 other DOWNSTREAM CG42718 & 1 other INTERGENIC
3R	3346214	3R_3346214_SNP [dm3] 3R_7520492_SNP [dm6]	A	T	2.069e^-4	0.582	INTRON alpha-Est7	TF binding site mE1_TFBS_cad
2R	11543513	2R_11543513_SNP [dm3] 2R_15656008_SNP [dm6]	G	A	2.071e^-4	0.582	INTRON CG42524
2L	13863006	2L_13863006_SNP [dm3] 2L_13863006_SNP [dm6]	A	C	2.071e^-4	0.582	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	6692904	3L_6692904_SNP [dm3] 3L_6699804_SNP [dm6]	G	C	2.074e^-4	0.582	INTRON SP1173
2R	14354419	2R_14354419_SNP [dm3] 2R_18466914_SNP [dm6]	C	T	2.082e^-4	0.582	INTRON CG30116	TF binding site mE1_TFBS_chinmo
2L	9911811	2L_9911811_SNP [dm3] 2L_9911811_SNP [dm6]	G	A	2.083e^-4	0.582	INTRON Etl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	14720226	X_14720226_SNP [dm3] X_14826193_SNP [dm6]	C	G	2.083e^-4	0.582	UPSTREAM rut DOWNSTREAM CG14408 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4675363	3L_4675363_SNP [dm3] 3L_4675363_SNP [dm6]	G	A	2.085e^-4	0.582	INTRON axo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	4675371	3L_4675371_SNP [dm3] 3L_4675371_SNP [dm6]	A	G	2.085e^-4	0.582	INTRON axo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23425686	3R_23425686_SNP [dm3] 3R_27599964_SNP [dm6]	C	T	2.086e^-4	0.582	SYNONYMOUS_CODING dsd	TF binding site mE1_TFBS_cad
3L	4814697	3L_4814697_SNP [dm3] 3L_4814697_SNP [dm6]	C	T	2.088e^-4	0.582	SYNONYMOUS_CODING Dhc64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15181028	2L_15181028_SNP [dm3] 2L_15181028_SNP [dm6]	C	A	2.094e^-4	0.582	INTRON CG4168
3L	7810961	3L_7810961_DEL [dm3] 3L_7817861_DEL [dm6]	TT	G	2.096e^-4	0.582	INTRON Pdp1	TF binding site mE1_TFBS_cad
2L	15107966	2L_15107966_SNP [dm3] 2L_15107966_SNP [dm6]	T	C	2.097e^-4	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16678608	2R_16678608_SNP [dm3] 2R_20791103_SNP [dm6]	A	G	2.100e^-4	0.582	UTR_5_PRIME CG43677 UPSTREAM CG43667 DOWNSTREAM CG43668
2L	3461945	2L_3461945_SNP [dm3] 2L_3461945_SNP [dm6]	T	C	2.105e^-4	0.582	UTR_5_PRIME CG3246 DOWNSTREAM msl-2	TF binding site mE1_TFBS_cad
3R	19367947	3R_19367947_SNP [dm3] 3R_23542225_SNP [dm6]	G	C	2.105e^-4	0.582	INTERGENIC
2L	22025869	2L_22025869_SNP [dm3] 2L_22025869_SNP [dm6]	C	T	2.106e^-4	0.582	DOWNSTREAM tio INTERGENIC
2R	1321883	2R_1321883_SNP [dm3] 2R_5434378_SNP [dm6]	T	C	2.108e^-4	0.582	INTRON laccase2
2R	18494773	2R_18494773_SNP [dm3] 2R_22607268_SNP [dm6]	T	C	2.112e^-4	0.582	UPSTREAM snoRNA:Psi28S-1175c & 1 other DOWNSTREAM snoRNA:Me28S-G2173 & 1 other INTRON RpS16 EXON snoRNA:Psi28S-1175b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	4787376	3L_4787376_SNP [dm3] 3L_4787376_SNP [dm6]	T	C	2.115e^-4	0.582	INTRON RhoGEF64C
2R	18037441	2R_18037441_SNP [dm3] 2R_22149936_SNP [dm6]	C	A	2.122e^-4	0.582	INTRON a
3L	16399860	3L_16399860_SNP [dm3] 3L_16406760_SNP [dm6]	G	T	2.124e^-4	0.582	INTRON fax	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	15382045	X_15382045_SNP [dm3] X_15488012_SNP [dm6]	A	T	2.131e^-4	0.582	INTRON Gmap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18151797	3L_18151797_SNP [dm3] 3L_18158697_SNP [dm6]	G	C	2.136e^-4	0.582	INTRON CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8013882	X_8013882_SNP [dm3] X_8119849_SNP [dm6]	G	A	2.141e^-4	0.582	SYNONYMOUS_CODING CG2260 DOWNSTREAM CG1575	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12574864	2L_12574864_SNP [dm3] 2L_12574864_SNP [dm6]	A	T	2.142e^-4	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3R	15097832	3R_15097832_SNP [dm3] 3R_19272110_SNP [dm6]	C	T	2.145e^-4	0.582	INTERGENIC
2L	13881044	2L_13881044_SNP [dm3] 2L_13881044_SNP [dm6]	G	A	2.146e^-4	0.582	INTRON CenG1A
3R	3489715	3R_3489715_SNP [dm3] 3R_7663993_SNP [dm6]	A	T	2.148e^-4	0.582	INTRON Nlg1
3R	16752904	3R_16752904_SNP [dm3] 3R_20927182_SNP [dm6]	G	A	2.148e^-4	0.582	SPLICE_SITE_REGION hdly INTRON CG31191 & 1 other
3L	4832962	3L_4832962_SNP [dm3] 3L_4832962_SNP [dm6]	A	G	2.149e^-4	0.582	NON_SYNONYMOUS_CODING CG13708	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13802757	2L_13802757_SNP [dm3] 2L_13802757_SNP [dm6]	C	A	2.150e^-4	0.582	UPSTREAM CAH1 INTERGENIC
2L	20371579	2L_20371579_SNP [dm3] 2L_20371579_SNP [dm6]	C	T	2.154e^-4	0.582	DOWNSTREAM Ugt37a1 INTERGENIC
3R	12384171	3R_12384171_SNP [dm3] 3R_16558449_SNP [dm6]	C	T	2.155e^-4	0.582	INTRON CG42342
3L	14563206	3L_14563206_SNP [dm3] 3L_14570106_SNP [dm6]	C	A	2.157e^-4	0.582	INTERGENIC
3L	10425481	3L_10425481_SNP [dm3] 3L_10432381_SNP [dm6]	G	T	2.157e^-4	0.582	UPSTREAM Ir67b DOWNSTREAM Ir67c INTERGENIC
2L	17442819	2L_17442819_SNP [dm3] 2L_17442819_SNP [dm6]	T	C	2.157e^-4	0.582	SYNONYMOUS_CODING dl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19390538	2R_19390538_SNP [dm3] 2R_23503015_SNP [dm6]	A	G	2.163e^-4	0.582	UTR_5_PRIME CG13559	TF binding site mE1_TFBS_inv
2R	10452439	2R_10452439_SNP [dm3] 2R_14564934_SNP [dm6]	G	T	2.166e^-4	0.582	INTRON ttv
3L	18151781	3L_18151781_SNP [dm3] 3L_18158681_SNP [dm6]	G	T	2.169e^-4	0.582	INTRON CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12586539	2L_12586539_SNP [dm3] 2L_12586539_SNP [dm6]	G	T	2.173e^-4	0.582	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	18049992	2R_18049992_SNP [dm3] 2R_22162487_SNP [dm6]	T	G	2.176e^-4	0.582	INTRON a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12135715	2R_12135715_SNP [dm3] 2R_16248210_SNP [dm6]	T	A	2.178e^-4	0.582	INTRON CngA
3R	3428561	3R_3428561_SNP [dm3] 3R_7602839_SNP [dm6]	T	A	2.180e^-4	0.582	INTRON CG34127
3L	6692718	3L_6692718_SNP [dm3] 3L_6699618_SNP [dm6]	A	T	2.181e^-4	0.582	INTRON SP1173
3R	17901668	3R_17901668_SNP [dm3] 3R_22075946_SNP [dm6]	A	T	2.181e^-4	0.582	INTRON how
3L	5877695	3L_5877695_SNP [dm3] 3L_5884595_SNP [dm6]	T	C	2.183e^-4	0.582	DOWNSTREAM CG13287 INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	18219289	2L_18219289_DEL [dm3] 2L_18219289_DEL [dm6]	ACA	A	2.185e^-4	0.582	INTRON CG42750
2R	16838721	2R_16838721_SNP [dm3] 2R_20951216_SNP [dm6]	T	G	2.186e^-4	0.582	DOWNSTREAM CG33704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9565573	3R_9565573_SNP [dm3] 3R_13739851_SNP [dm6]	G	A	2.187e^-4	0.582	INTRON CG34383	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	6966512	3R_6966512_SNP [dm3] 3R_11140790_SNP [dm6]	A	C	2.190e^-4	0.582	INTERGENIC
2L	12411859	2L_12411859_SNP [dm3] 2L_12411859_SNP [dm6]	C	A	2.193e^-4	0.582	INTRON vir-1
X	21837054	X_21837054_DEL [dm3] X_22435219_DEL [dm6]	GG	G	2.194e^-4	0.582	INTERGENIC	transposable element FlyBase
2L	14237331	2L_14237331_SNP [dm3] 2L_14237331_SNP [dm6]	C	G	2.195e^-4	0.582	INTERGENIC
3L	13818559	3L_13818559_SNP [dm3] 3L_13825459_SNP [dm6]	G	A	2.195e^-4	0.582	INTERGENIC
3L	15766830	3L_15766830_SNP [dm3] 3L_15773730_SNP [dm6]	A	T	2.205e^-4	0.582	INTERGENIC
3L	7704375	3L_7704375_SNP [dm3] 3L_7711275_SNP [dm6]	C	G	2.209e^-4	0.582	INTRON CG32373 & 1 other
2L	7388357	2L_7388357_SNP [dm3] 2L_7388357_SNP [dm6]	T	G	2.210e^-4	0.582	UPSTREAM gudu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	15074569	2L_15074569_SNP [dm3] 2L_15074569_SNP [dm6]	T	A	2.210e^-4	0.582	UPSTREAM CG15270 DOWNSTREAM vas INTERGENIC
X	3029966	X_3029966_SNP [dm3] X_3135933_SNP [dm6]	A	G	2.213e^-4	0.582	INTRON N	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	25547435	3R_25547435_SNP [dm3] 3R_29721713_SNP [dm6]	T	C	2.220e^-4	0.582	NON_SYNONYMOUS_CODING CG15506 UPSTREAM CG34296	TF binding site mE1_TFBS_chinmo
3L	7389703	3L_7389703_SNP [dm3] 3L_7396603_SNP [dm6]	A	C	2.225e^-4	0.582	SYNONYMOUS_CODING CG32379 DOWNSTREAM CG8563	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2533340	3L_2533340_SNP [dm3] 3L_2533340_SNP [dm6]	A	T	2.225e^-4	0.582	INTRON Spn
3R	3351122	3R_3351122_SNP [dm3] 3R_7525400_SNP [dm6]	G	C	2.226e^-4	0.582	SYNONYMOUS_CODING alpha-Est6 UPSTREAM alpha-Est4aPsi	TF binding site mE1_TFBS_cad
3L	17595331	3L_17595331_SNP [dm3] 3L_17602231_SNP [dm6]	G	A	2.227e^-4	0.582	INTRON Eip74EF
3L	8215399	3L_8215399_SNP [dm3] 3L_8222299_SNP [dm6]	T	C	2.230e^-4	0.582	INTRON CG13678
3R	3428466	3R_3428466_INS [dm3] 3R_7602744_INS [dm6]	C	CT	2.231e^-4	0.582	INTRON CG34127
2L	6848450	2L_6848450_SNP [dm3] 2L_6848450_SNP [dm6]	T	A	2.236e^-4	0.582	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	10816756	2L_10816756_SNP [dm3] 2L_10816756_SNP [dm6]	C	T	2.240e^-4	0.582	INTRON Nos
X	3429785	X_3429785_SNP [dm3] X_3535752_SNP [dm6]	C	T	2.242e^-4	0.582	INTRON CG32791	TF binding site mE1_TFBS_inv
3R	4162011	3R_4162011_SNP [dm3] 3R_8336289_SNP [dm6]	A	G	2.249e^-4	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	18218747	2L_18218747_SNP [dm3] 2L_18218747_SNP [dm6]	T	A	2.252e^-4	0.582	INTRON CG42750
2L	3367890	2L_3367890_SNP [dm3] 2L_3367890_SNP [dm6]	C	A	2.252e^-4	0.582	INTRON CG34394	TF binding site mE1_TFBS_chinmo
2L	7127045	2L_7127045_SNP [dm3] 2L_7127045_SNP [dm6]	T	A	2.253e^-4	0.582	INTRON Pvf3
2L	11122572	2L_11122572_SNP [dm3] 2L_11122572_SNP [dm6]	T	C	2.255e^-4	0.582	UPSTREAM CG14921 DOWNSTREAM Csl4 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12232769	3R_12232769_DEL [dm3] 3R_16407047_DEL [dm6]	AA	A	2.258e^-4	0.582	EXON CR45630
2L	20371657	2L_20371657_SNP [dm3] 2L_20371657_SNP [dm6]	T	G	2.261e^-4	0.582	DOWNSTREAM Ugt37a1 INTERGENIC
3L	6318907	3L_6318907_SNP [dm3] 3L_6325807_SNP [dm6]	C	A	2.261e^-4	0.582	NON_SYNONYMOUS_CODING Or65b
X	2828644	X_2828644_SNP [dm3] X_2934611_SNP [dm6]	C	A	2.267e^-4	0.582	UPSTREAM CG3592 INTRON kirre
3R	19366771	3R_19366771_SNP [dm3] 3R_23541049_SNP [dm6]	C	T	2.270e^-4	0.582	INTERGENIC
3L	9026311	3L_9026311_INS [dm3] 3L_9033211_INS [dm6]	T	TA	2.273e^-4	0.582	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	7355577	3R_7355577_SNP [dm3] 3R_11529855_SNP [dm6]	G	A	2.274e^-4	0.582	INTERGENIC
3R	3351158	3R_3351158_SNP [dm3] 3R_7525436_SNP [dm6]	C	G	2.276e^-4	0.582	NON_SYNONYMOUS_CODING alpha-Est6 UPSTREAM alpha-Est4aPsi	TF binding site mE1_TFBS_cad
3R	3428562	3R_3428562_INS [dm3] 3R_7602840_INS [dm6]	T	TCCAATGTAAACCAAATC...	2.278e^-4	0.582	INTRON CG34127
2L	12394514	2L_12394514_SNP [dm3] 2L_12394514_SNP [dm6]	C	T	2.279e^-4	0.582	INTRON bru-2
3L	5597997	3L_5597997_SNP [dm3] 3L_5604897_SNP [dm6]	A	T	2.280e^-4	0.582	NON_SYNONYMOUS_CODING mthl2 UPSTREAM CG10590
3R	3497581	3R_3497581_SNP [dm3] 3R_7671859_SNP [dm6]	C	G	2.281e^-4	0.582	INTRON Nlg1
3R	3491758	3R_3491758_SNP [dm3] 3R_7666036_SNP [dm6]	G	T	2.287e^-4	0.582	INTRON Nlg1
2L	12122447	2L_12122447_SNP [dm3] 2L_12122447_SNP [dm6]	C	T	2.289e^-4	0.582	INTRON CG17211
3R	26496285	3R_26496285_SNP [dm3] 3R_30670563_SNP [dm6]	G	A	2.296e^-4	0.583	INTERGENIC
2L	12755498	2L_12755498_SNP [dm3] 2L_12755498_SNP [dm6]	G	T	2.312e^-4	0.587	INTERGENIC
2R	15418493	2R_15418493_SNP [dm3] 2R_19530988_SNP [dm6]	C	A	2.332e^-4	0.59	INTRON sm	TF binding site mE1_TFBS_sens
X	8691889	X_8691889_SNP [dm3] X_8797856_SNP [dm6]	A	C	2.333e^-4	0.59	INTRON Lim1
2L	12812152	2L_12812152_SNP [dm3] 2L_12812152_SNP [dm6]	A	G	2.336e^-4	0.59	INTERGENIC
3L	2980920	3L_2980920_SNP [dm3] 3L_2980920_SNP [dm6]	T	A	2.337e^-4	0.59	UPSTREAM CG2107 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	1259719	3R_1259719_SNP [dm3] 3R_5433997_SNP [dm6]	G	C	2.351e^-4	0.592	INTRON CG14669
3R	21970092	3R_21970092_SNP [dm3] 3R_26144370_SNP [dm6]	A	C	2.364e^-4	0.595	INTERGENIC
2L	7935558	2L_7935558_SNP [dm3] 2L_7935558_SNP [dm6]	G	T	2.367e^-4	0.595	INTRON Snoo
2R	14354417	2R_14354417_SNP [dm3] 2R_18466912_SNP [dm6]	C	A	2.375e^-4	0.595	INTRON CG30116	TF binding site mE1_TFBS_chinmo
3R	3342966	3R_3342966_SNP [dm3] 3R_7517244_SNP [dm6]	C	T	2.375e^-4	0.595	INTERGENIC
2R	17078041	2R_17078041_SNP [dm3] 2R_21190536_SNP [dm6]	G	A	2.383e^-4	0.596	SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	25376309	3R_25376309_SNP [dm3] 3R_29550587_SNP [dm6]	A	G	2.395e^-4	0.597	INTERGENIC
X	17062763	X_17062763_SNP [dm3] X_17168730_SNP [dm6]	A	T	2.400e^-4	0.597	INTRON baz
X	3945240	X_3945240_SNP [dm3] X_4051207_SNP [dm6]	C	A	2.400e^-4	0.597	INTERGENIC
2R	18049996	2R_18049996_SNP [dm3] 2R_22162491_SNP [dm6]	T	G	2.405e^-4	0.597	INTRON a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10398237	2L_10398237_SNP [dm3] 2L_10398237_SNP [dm6]	A	T	2.417e^-4	0.597	INTRON Cnot4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17481186	2L_17481186_SNP [dm3] 2L_17481186_SNP [dm6]	C	T	2.420e^-4	0.597	UPSTREAM CG5110 & 1 other DOWNSTREAM CG6453 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4641738	3L_4641738_SNP [dm3] 3L_4641738_SNP [dm6]	G	C	2.421e^-4	0.597	DOWNSTREAM axo INTRON axo
3L	10079350	3L_10079350_SNP [dm3] 3L_10086250_SNP [dm6]	A	C	2.423e^-4	0.597	DOWNSTREAM CG14160 INTRON dpr6
3L	6007423	3L_6007423_SNP [dm3] 3L_6014323_SNP [dm6]	A	G	2.424e^-4	0.597	INTRON PVRAP
2R	18660344	2R_18660344_SNP [dm3] 2R_22772839_SNP [dm6]	G	A	2.429e^-4	0.597	INTRON CG42260
2R	15085703	2R_15085703_SNP [dm3] 2R_19198198_SNP [dm6]	A	G	2.435e^-4	0.597	INTRON hppy
3L	13006450	3L_13006450_SNP [dm3] 3L_13013350_SNP [dm6]	A	C	2.439e^-4	0.597	SYNONYMOUS_CODING MICAL-like	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9814835	2R_9814835_SNP [dm3] 2R_13927330_SNP [dm6]	A	T	2.443e^-4	0.597	INTRON shot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	18051253	2R_18051253_INS [dm3] 2R_22163748_INS [dm6]	C	CAAAAT	2.445e^-4	0.597	UTR_3_PRIME CG34206 INTRON a	TF binding site mE1_TFBS_cad
X	17062976	X_17062976_INS [dm3] X_17168943_INS [dm6]	G	GTTTAATTTC	2.449e^-4	0.597	INTRON baz
X	7483205	X_7483205_DEL [dm3] X_7589172_DEL [dm6]	TT	T	2.452e^-4	0.597	INTERGENIC	regulatory region REDfly_CRMs
X	12266651	X_12266651_SNP [dm3] X_12372618_SNP [dm6]	C	T	2.461e^-4	0.597	UPSTREAM CG2577 INTERGENIC
2L	7999738	2L_7999738_SNP [dm3] 2L_7999738_SNP [dm6]	C	A	2.463e^-4	0.597	UTR_3_PRIME Wwox DOWNSTREAM Sirup INTRON Wwox	TF binding site BDTNP1_TFBS_twi
2L	7999739	2L_7999739_SNP [dm3] 2L_7999739_SNP [dm6]	T	A	2.463e^-4	0.597	UTR_3_PRIME Wwox DOWNSTREAM Sirup INTRON Wwox	TF binding site BDTNP1_TFBS_twi
X	12220163	X_12220163_SNP [dm3] X_12326130_SNP [dm6]	C	A	2.466e^-4	0.597	INTRON Ten-a
2L	9916765	2L_9916765_SNP [dm3] 2L_9916765_SNP [dm6]	C	T	2.466e^-4	0.597	SYNONYMOUS_CODING yip2 DOWNSTREAM CG5885	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20371652	2L_20371652_SNP [dm3] 2L_20371652_SNP [dm6]	G	C	2.468e^-4	0.597	DOWNSTREAM Ugt37a1 INTERGENIC
X	3429972	X_3429972_SNP [dm3] X_3535939_SNP [dm6]	A	T	2.468e^-4	0.597	INTRON CG32791
3L	2533904	3L_2533904_DEL [dm3] 3L_2533904_DEL [dm6]	TCCC	G	2.469e^-4	0.597	INTRON Spn
3R	5892809	3R_5892809_SNP [dm3] 3R_10067087_SNP [dm6]	A	G	2.471e^-4	0.597	UPSTREAM CG33784 INTRON CG33783
3L	21187105	3L_21187105_SNP [dm3] 3L_21194005_SNP [dm6]	T	C	2.473e^-4	0.597	UPSTREAM CG42337 DOWNSTREAM park INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	16838708	2R_16838708_INS [dm3] 2R_20951203_INS [dm6]	A	AA	2.475e^-4	0.597	DOWNSTREAM CG33704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2186319	3L_2186319_SNP [dm3] 3L_2186319_SNP [dm6]	G	A	2.478e^-4	0.597	SYNONYMOUS_CODING CG13810	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5876280	3L_5876280_SNP [dm3] 3L_5883180_SNP [dm6]	C	T	2.481e^-4	0.597	SYNONYMOUS_CODING CG13287	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18052015	2R_18052015_SNP [dm3] 2R_22164510_SNP [dm6]	G	C	2.483e^-4	0.597	NON_SYNONYMOUS_CODING CG34206 INTRON a	TF binding site mE1_TFBS_sens
2L	11943366	2L_11943366_SNP [dm3] 2L_11943366_SNP [dm6]	T	C	2.483e^-4	0.597	UPSTREAM Cry INTERGENIC	regulatory region REDfly_CRMs
X	20728758	X_20728758_SNP [dm3] X_20857731_SNP [dm6]	T	C	2.487e^-4	0.597	INTRON shakB
3L	4379842	3L_4379842_SNP [dm3] 3L_4379842_SNP [dm6]	G	A	2.493e^-4	0.597	UPSTREAM DopEcR INTRON DopEcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	8126433	X_8126433_SNP [dm3] X_8232400_SNP [dm6]	T	C	2.493e^-4	0.597	INTRON sdt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17689397	2R_17689397_SNP [dm3] 2R_21801892_SNP [dm6]	G	A	2.497e^-4	0.597	UPSTREAM CG4386 INTERGENIC
X	3030095	X_3030095_SNP [dm3] X_3136062_SNP [dm6]	G	T	2.520e^-4	0.597	INTRON N	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	3438133	3R_3438133_DEL [dm3] 3R_7612411_DEL [dm6]	TG	T	2.521e^-4	0.597	INTRON CG34127
3L	4650838	3L_4650838_SNP [dm3] 3L_4650838_SNP [dm6]	A	T	2.538e^-4	0.597	DOWNSTREAM CG32238 INTRON axo
3R	3452154	3R_3452154_SNP [dm3] 3R_7626432_SNP [dm6]	T	C	2.539e^-4	0.597	DOWNSTREAM CR44332 INTRON CG34127
2L	7860370	2L_7860370_SNP [dm3] 2L_7860370_SNP [dm6]	C	A	2.543e^-4	0.597	DOWNSTREAM lectin-28C INTRON TwdlE	TF binding site BDTNP1_TFBS_twi
3R	12989309	3R_12989309_INS [dm3] 3R_17163587_INS [dm6]	C	CTGCTTTTC	2.547e^-4	0.597	INTRON Mur89F
2L	10828904	2L_10828904_SNP [dm3] 2L_10828904_SNP [dm6]	C	A	2.549e^-4	0.597	INTRON Nos
3L	4986477	3L_4986477_SNP [dm3] 3L_4986477_SNP [dm6]	T	G	2.550e^-4	0.597	INTRON Con
3L	5841141	3L_5841141_SNP [dm3] 3L_5848041_SNP [dm6]	A	G	2.558e^-4	0.597	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA
3L	14172763	3L_14172763_SNP [dm3] 3L_14179663_SNP [dm6]	G	A	2.560e^-4	0.597	INTERGENIC	regulatory region REDfly_CRMs
2L	11368944	2L_11368944_SNP [dm3] 2L_11368944_SNP [dm6]	G	A	2.561e^-4	0.597	NON_SYNONYMOUS_CODING salr	TF binding site mE1_TFBS_cad
X	13094647	X_13094647_SNP [dm3] X_13200614_SNP [dm6]	G	A	2.563e^-4	0.597	NON_SYNONYMOUS_CODING sno DOWNSTREAM CG44437	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	12574861	2L_12574861_SNP [dm3] 2L_12574861_SNP [dm6]	A	T	2.564e^-4	0.597	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3L	14494446	3L_14494446_SNP [dm3] 3L_14501346_SNP [dm6]	C	A	2.574e^-4	0.597	INTRON bbg	TF binding site BDTNP1_TFBS_prd
2L	13802751	2L_13802751_SNP [dm3] 2L_13802751_SNP [dm6]	A	G	2.576e^-4	0.597	UPSTREAM CAH1 INTERGENIC
3R	15097847	3R_15097847_SNP [dm3] 3R_19272125_SNP [dm6]	C	T	2.577e^-4	0.597	INTERGENIC
2L	12747269	2L_12747269_SNP [dm3] 2L_12747269_SNP [dm6]	C	T	2.577e^-4	0.597	INTERGENIC
2L	22070634	2L_22070634_SNP [dm3] 2L_22070634_SNP [dm6]	G	A	2.579e^-4	0.597	UPSTREAM CG31702 INTERGENIC	transposable element FlyBase
3L	12153148	3L_12153148_DEL [dm3] 3L_12160048_DEL [dm6]	GA	G	2.580e^-4	0.597	INTRON CG9760
X	9849354	X_9849354_SNP [dm3] X_9955321_SNP [dm6]	C	T	2.580e^-4	0.597	INTERGENIC
3L	14973745	3L_14973745_SNP [dm3] 3L_14980645_SNP [dm6]	T	C	2.582e^-4	0.597	SYNONYMOUS_CODING CG3349	TF binding site mE1_TFBS_sens
X	21873986	X_21873986_DEL [dm3] X_22472150_DEL [dm6]	AGGTCTCTCAA...	A	2.591e^-4	0.597	UPSTREAM CG14613 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	21874003	X_21874003_SNP [dm3] X_22472167_SNP [dm6]	A	C	2.591e^-4	0.597	UPSTREAM CG14613 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	439091	3L_439091_SNP [dm3] 3L_439091_SNP [dm6]	T	G	2.593e^-4	0.597	INTRON klar
3L	7477473	3L_7477473_SNP [dm3] 3L_7484373_SNP [dm6]	T	C	2.601e^-4	0.597	INTERGENIC
2L	20371636	2L_20371636_SNP [dm3] 2L_20371636_SNP [dm6]	A	T	2.604e^-4	0.597	DOWNSTREAM Ugt37a1 INTERGENIC
3R	24907298	3R_24907298_SNP [dm3] 3R_29081576_SNP [dm6]	A	T	2.606e^-4	0.597	INTRON CG11873
X	15391659	X_15391659_SNP [dm3] X_15497626_SNP [dm6]	G	T	2.608e^-4	0.597	INTRON Gmap EXON CR44888	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	13446263	2L_13446263_INS [dm3] 2L_13446263_INS [dm6]	A	TG	2.610e^-4	0.597	UPSTREAM CG9267 INTRON CG42784	TF binding site mE1_TFBS_HSA
2R	13526626	2R_13526626_SNP [dm3] 2R_17639121_SNP [dm6]	C	T	2.615e^-4	0.597	UTR_5_PRIME CG10936	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	16400199	3L_16400199_SNP [dm3] 3L_16407099_SNP [dm6]	G	A	2.618e^-4	0.597	SYNONYMOUS_CODING fax	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	3417115	3R_3417115_SNP [dm3] 3R_7591393_SNP [dm6]	G	C	2.621e^-4	0.597	INTRON CG34127
3L	1355201	3L_1355201_SNP [dm3] 3L_1355201_SNP [dm6]	C	T	2.628e^-4	0.597	INTRON Ptp61F
3R	5892177	3R_5892177_SNP [dm3] 3R_10066455_SNP [dm6]	C	G	2.630e^-4	0.597	UPSTREAM CG33783 INTERGENIC
2L	18211564	2L_18211564_SNP [dm3] 2L_18211564_SNP [dm6]	T	A	2.633e^-4	0.597	INTRON CG42750
2L	22078873	2L_22078873_SNP [dm3] 2L_22078873_SNP [dm6]	G	T	2.635e^-4	0.597	UPSTREAM ttm3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17495917	2L_17495917_SNP [dm3] 2L_17495917_SNP [dm6]	T	A	2.637e^-4	0.597	INTRON qua	TF binding site mE1_TFBS_HSA
3L	5396527	3L_5396527_SNP [dm3] 3L_5403427_SNP [dm6]	A	C	2.639e^-4	0.597	INTERGENIC
2L	14072262	2L_14072262_SNP [dm3] 2L_14072262_SNP [dm6]	T	C	2.640e^-4	0.597	INTRON nAChRalpha5
3L	8099564	3L_8099564_SNP [dm3] 3L_8106464_SNP [dm6]	G	A	2.641e^-4	0.597	SYNONYMOUS_CODING Ect4 UTR_3_PRIME Ect4 INTRON Ect4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	7463651	X_7463651_SNP [dm3] X_7569618_SNP [dm6]	C	T	2.645e^-4	0.597	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	18572267	3L_18572267_SNP [dm3] 3L_18579167_SNP [dm6]	G	A	2.646e^-4	0.597	INTERGENIC
3R	18890750	3R_18890750_SNP [dm3] 3R_23065028_SNP [dm6]	C	A	2.651e^-4	0.597	INTRON CG17111	TF binding site mE1_TFBS_cad
3L	7468965	3L_7468965_SNP [dm3] 3L_7475865_SNP [dm6]	A	C	2.652e^-4	0.597	SYNONYMOUS_CODING CG43292
3L	7014435	3L_7014435_SNP [dm3] 3L_7021335_SNP [dm6]	T	A	2.669e^-4	0.597	INTRON Mp
2L	11122576	2L_11122576_SNP [dm3] 2L_11122576_SNP [dm6]	A	C	2.676e^-4	0.597	UTR_3_PRIME Csl4 UPSTREAM CG14921	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15011914	3R_15011914_SNP [dm3] 3R_19186192_SNP [dm6]	T	A	2.679e^-4	0.597	INTRON CG31475
2L	9073766	2L_9073766_SNP [dm3] 2L_9073766_SNP [dm6]	C	T	2.683e^-4	0.597	INTERGENIC
2L	16471462	2L_16471462_SNP [dm3] 2L_16471462_SNP [dm6]	G	C	2.684e^-4	0.597	INTRON dac
3L	14172597	3L_14172597_SNP [dm3] 3L_14179497_SNP [dm6]	C	T	2.687e^-4	0.597	UPSTREAM D INTERGENIC	regulatory region REDfly_CRMs
2L	17928728	2L_17928728_SNP [dm3] 2L_17928728_SNP [dm6]	C	A	2.688e^-4	0.597	INTERGENIC	TF binding site mE1_TFBS_cad
X	9778089	X_9778089_SNP [dm3] X_9884056_SNP [dm6]	T	C	2.690e^-4	0.597	UPSTREAM CG9691 DOWNSTREAM CG9689 INTERGENIC
X	3030012	X_3030012_SNP [dm3] X_3135979_SNP [dm6]	G	A	2.691e^-4	0.597	INTRON N	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	8142477	X_8142477_SNP [dm3] X_8248444_SNP [dm6]	G	A	2.699e^-4	0.597	DOWNSTREAM ND75 & 1 other INTERGENIC
3R	3443643	3R_3443643_SNP [dm3] 3R_7617921_SNP [dm6]	A	G	2.705e^-4	0.597	INTRON CG34127
3L	5675001	3L_5675001_SNP [dm3] 3L_5681901_SNP [dm6]	G	C	2.708e^-4	0.597	INTRON sif
3L	20949862	3L_20949862_SNP [dm3] 3L_20956762_SNP [dm6]	C	T	2.708e^-4	0.597	UPSTREAM CG10588 & 1 other INTERGENIC
3L	5395115	3L_5395115_SNP [dm3] 3L_5402015_SNP [dm6]	T	C	2.708e^-4	0.597	INTERGENIC
3L	10073973	3L_10073973_SNP [dm3] 3L_10080873_SNP [dm6]	A	G	2.710e^-4	0.597	INTRON dpr6
X	3430077	X_3430077_SNP [dm3] X_3536044_SNP [dm6]	T	A	2.710e^-4	0.597	INTRON CG32791
2L	21852203	2L_21852203_SNP [dm3] 2L_21852203_SNP [dm6]	C	A	2.716e^-4	0.597	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6310749	3L_6310749_SNP [dm3] 3L_6317649_SNP [dm6]	C	G	2.717e^-4	0.597	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	6100998	2L_6100998_INS [dm3] 2L_6100998_INS [dm6]	T	TATG	2.721e^-4	0.597	INTRON stai	TF binding site BDTNP1_TFBS_dl
3L	9726894	3L_9726894_SNP [dm3] 3L_9733794_SNP [dm6]	C	T	2.721e^-4	0.597	SYNONYMOUS_CODING CG6749 UPSTREAM mir-4986 DOWNSTREAM CG42268
2L	737040	2L_737040_SNP [dm3] 2L_737040_SNP [dm6]	A	T	2.723e^-4	0.597	DOWNSTREAM Eaat2 INTERGENIC
3L	14485540	3L_14485540_SNP [dm3] 3L_14492440_SNP [dm6]	G	T	2.724e^-4	0.597	INTRON bbg	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	10875550	2L_10875550_SNP [dm3] 2L_10875550_SNP [dm6]	C	T	2.726e^-4	0.597	INTERGENIC
2L	1998671	2L_1998671_SNP [dm3] 2L_1998671_SNP [dm6]	A	G	2.735e^-4	0.597	SYNONYMOUS_CODING CG33543
3L	18933140	3L_18933140_SNP [dm3] 3L_18940040_SNP [dm6]	T	C	2.737e^-4	0.597	INTRON CG32204
2R	16443855	2R_16443855_SNP [dm3] 2R_20556350_SNP [dm6]	A	T	2.739e^-4	0.597	UPSTREAM lms INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	5720654	3R_5720654_SNP [dm3] 3R_9894932_SNP [dm6]	C	A	2.741e^-4	0.597	INTRON Glut4EF
2L	21862129	2L_21862129_SNP [dm3] 2L_21862129_SNP [dm6]	C	T	2.744e^-4	0.597	INTRON CR44917
3L	16399896	3L_16399896_SNP [dm3] 3L_16406796_SNP [dm6]	T	C	2.745e^-4	0.597	INTRON fax	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8575887	2L_8575887_SNP [dm3] 2L_8575887_SNP [dm6]	T	A	2.752e^-4	0.597	INTRON Sema-1a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4245361	3L_4245361_SNP [dm3] 3L_4245361_SNP [dm6]	C	T	2.752e^-4	0.597	DOWNSTREAM ago INTRON pav	TF binding site mE1_TFBS_sens
X	8142471	X_8142471_SNP [dm3] X_8248438_SNP [dm6]	A	G	2.752e^-4	0.597	DOWNSTREAM ND75 & 1 other INTERGENIC
2L	6130918	2L_6130918_SNP [dm3] 2L_6130918_SNP [dm6]	C	T	2.753e^-4	0.597	UPSTREAM CG9222 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17789158	2R_17789158_SNP [dm3] 2R_21901653_SNP [dm6]	C	T	2.753e^-4	0.597	INTRON Fili	TF binding site BDTNP1_TFBS_twi
3L	1533678	3L_1533678_SNP [dm3] 3L_1533678_SNP [dm6]	C	G	2.756e^-4	0.597	NON_SYNONYMOUS_CODING CG12090	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25818498	3R_25818498_SNP [dm3] 3R_29992776_SNP [dm6]	A	C	2.757e^-4	0.597	SPLICE_SITE_REGION Acph-1 DOWNSTREAM CG7903 INTRON Acph-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	25818773	3R_25818773_SNP [dm3] 3R_29993051_SNP [dm6]	T	A	2.760e^-4	0.597	NON_SYNONYMOUS_CODING Acph-1 DOWNSTREAM CG7903	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	18217173	2L_18217173_SNP [dm3] 2L_18217173_SNP [dm6]	T	A	2.773e^-4	0.597	INTRON CG42750
3L	14247504	3L_14247504_SNP [dm3] 3L_14254404_SNP [dm6]	C	T	2.775e^-4	0.597	INTERGENIC
2R	10276001	2R_10276001_SNP [dm3] 2R_14388496_SNP [dm6]	T	G	2.776e^-4	0.597	INTERGENIC
2L	5811427	2L_5811427_SNP [dm3] 2L_5811427_SNP [dm6]	T	C	2.778e^-4	0.597	UPSTREAM CG43307 DOWNSTREAM CR44576 INTERGENIC
X	8241526	X_8241526_SNP [dm3] X_8347493_SNP [dm6]	G	A	2.780e^-4	0.597	INTRON nAChRalpha3
3L	14141293	3L_14141293_SNP [dm3] 3L_14148193_SNP [dm6]	G	T	2.782e^-4	0.597	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4479624	X_4479624_SNP [dm3] X_4585591_SNP [dm6]	C	G	2.783e^-4	0.597	INTRON CR32773	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	14315519	3R_14315519_SNP [dm3] 3R_18489797_SNP [dm6]	A	G	2.786e^-4	0.597	INTRON fru
2L	3842674	2L_3842674_SNP [dm3] 2L_3842674_SNP [dm6]	C	T	2.787e^-4	0.597	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10233299	3L_10233299_SNP [dm3] 3L_10240199_SNP [dm6]	A	C	2.790e^-4	0.597	EXON CR45403
3R	10189200	3R_10189200_SNP [dm3] 3R_14363478_SNP [dm6]	G	A	2.791e^-4	0.597	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12177156	2R_12177156_INS [dm3] 2R_16289651_INS [dm6]	A	AGCCT	2.791e^-4	0.597	UPSTREAM CG30099 INTRON CR43730 & 1 other
2L	9942004	2L_9942004_SNP [dm3] 2L_9942004_SNP [dm6]	C	A	2.803e^-4	0.597	SYNONYMOUS_CODING CG5853 UTR_3_PRIME CG4619	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8190499	2R_8190499_SNP [dm3] 2R_12302994_SNP [dm6]	T	C	2.808e^-4	0.597	SYNONYMOUS_CODING SIP2 UTR_3_PRIME SIP2 UPSTREAM CG8850
3L	9726892	3L_9726892_SNP [dm3] 3L_9733792_SNP [dm6]	G	A	2.809e^-4	0.597	NON_SYNONYMOUS_CODING CG6749 UPSTREAM mir-4986 DOWNSTREAM CG42268
3L	9726895	3L_9726895_SNP [dm3] 3L_9733795_SNP [dm6]	T	G	2.809e^-4	0.597	NON_SYNONYMOUS_CODING CG6749 UPSTREAM mir-4986 DOWNSTREAM CG42268
3R	26079501	3R_26079501_SNP [dm3] 3R_30253779_SNP [dm6]	T	A	2.817e^-4	0.597	NON_SYNONYMOUS_CODING CG18404 SPLICE_SITE_REGION CG18404 DOWNSTREAM CG9682
2L	7939848	2L_7939848_SNP [dm3] 2L_7939848_SNP [dm6]	T	C	2.821e^-4	0.597	INTRON Snoo
3R	13908819	3R_13908819_SNP [dm3] 3R_18083097_SNP [dm6]	C	T	2.823e^-4	0.597	DOWNSTREAM CG14317 INTERGENIC
2L	12084385	2L_12084385_SNP [dm3] 2L_12084385_SNP [dm6]	A	G	2.825e^-4	0.597	SYNONYMOUS_CODING prd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	9849318	X_9849318_DEL [dm3] X_9955285_DEL [dm6]	TCGACT	T	2.826e^-4	0.597	INTERGENIC
2R	11543417	2R_11543417_SNP [dm3] 2R_15655912_SNP [dm6]	T	G	2.826e^-4	0.597	INTRON CG42524
3R	25541915	3R_25541915_SNP [dm3] 3R_29716193_SNP [dm6]	G	T	2.835e^-4	0.597	UPSTREAM Dup99B DOWNSTREAM Obp99b INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_zfh1
3R	20671158	3R_20671158_SNP [dm3] 3R_24845436_SNP [dm6]	T	C	2.838e^-4	0.597	INTRON Esp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med
2R	17235182	2R_17235182_INS [dm3] 2R_21347677_INS [dm6]	A	ATGAA	2.839e^-4	0.597	INTRON CG9822
2L	17484501	2L_17484501_SNP [dm3] 2L_17484501_SNP [dm6]	G	C	2.842e^-4	0.597	UTR_5_PRIME CG5131 UPSTREAM CG6453	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	7931558	X_7931558_SNP [dm3] X_8037525_SNP [dm6]	T	G	2.844e^-4	0.597	UPSTREAM CG2233 DOWNSTREAM fs_1_h INTERGENIC
3R	10504551	3R_10504551_SNP [dm3] 3R_14678829_SNP [dm6]	A	G	2.845e^-4	0.597	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	3322763	X_3322763_SNP [dm3] X_3428730_SNP [dm6]	C	A	2.849e^-4	0.597	INTRON CR44999 & 1 other	TF binding site mE1_TFBS_HSA transposable element FlyBase
2R	10153830	2R_10153830_SNP [dm3] 2R_14266325_SNP [dm6]	G	T	2.861e^-4	0.598	INTRON CG8547
3R	17558745	3R_17558745_SNP [dm3] 3R_21733023_SNP [dm6]	C	T	2.862e^-4	0.598	INTERGENIC
2L	20560539	2L_20560539_SNP [dm3] 2L_20560539_SNP [dm6]	A	G	2.863e^-4	0.598	INTERGENIC
2L	12737835	2L_12737835_SNP [dm3] 2L_12737835_SNP [dm6]	G	A	2.867e^-4	0.598	INTRON MRP	TF binding site mE1_TFBS_cad
3R	6965163	3R_6965163_SNP [dm3] 3R_11139441_SNP [dm6]	G	A	2.870e^-4	0.598	SYNONYMOUS_CODING CG4706
X	9849309	X_9849309_SNP [dm3] X_9955276_SNP [dm6]	T	C	2.875e^-4	0.598	INTERGENIC
2L	18217176	2L_18217176_SNP [dm3] 2L_18217176_SNP [dm6]	C	T	2.878e^-4	0.598	INTRON CG42750
2R	16443886	2R_16443886_SNP [dm3] 2R_20556381_SNP [dm6]	T	G	2.879e^-4	0.598	UPSTREAM lms INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8215395	3L_8215395_SNP [dm3] 3L_8222295_SNP [dm6]	T	A	2.890e^-4	0.599	INTRON CG13678
2R	18051256	2R_18051256_INS [dm3] 2R_22163751_INS [dm6]	A	ATA	2.896e^-4	0.599	UTR_3_PRIME CG34206 INTRON a	TF binding site mE1_TFBS_cad
3L	968341	3L_968341_INS [dm3] 3L_968341_INS [dm6]	G	GAGTA	2.903e^-4	0.599	INTRON Glut1
3R	5727473	3R_5727473_SNP [dm3] 3R_9901751_SNP [dm6]	A	G	2.908e^-4	0.599	INTRON Glut4EF
3L	4848196	3L_4848196_SNP [dm3] 3L_4848196_SNP [dm6]	C	A	2.912e^-4	0.599	INTERGENIC
3R	4205741	3R_4205741_SNP [dm3] 3R_8380019_SNP [dm6]	A	T	2.913e^-4	0.599	INTRON CG45263
3R	5731608	3R_5731608_SNP [dm3] 3R_9905886_SNP [dm6]	A	G	2.914e^-4	0.599	INTRON Glut4EF	enhancer mE1_CBP_Enhancers TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	20541268	3L_20541268_SNP [dm3] 3L_20548168_SNP [dm6]	G	A	2.915e^-4	0.599	INTERGENIC
3L	7811358	3L_7811358_SNP [dm3] 3L_7818258_SNP [dm6]	T	C	2.916e^-4	0.599	INTRON Pdp1
3L	1550415	3L_1550415_SNP [dm3] 3L_1550415_SNP [dm6]	G	A	2.917e^-4	0.599	INTRON Cct1	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	14431307	3L_14431307_SNP [dm3] 3L_14438207_SNP [dm6]	C	G	2.924e^-4	0.599	INTRON bbg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_inv
3L	14431308	3L_14431308_SNP [dm3] 3L_14438208_SNP [dm6]	G	A	2.924e^-4	0.599	INTRON bbg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_inv
2L	6127812	2L_6127812_SNP [dm3] 2L_6127812_SNP [dm6]	T	C	2.925e^-4	0.599	UPSTREAM WDR79 DOWNSTREAM CG42730 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6127839	2L_6127839_SNP [dm3] 2L_6127839_SNP [dm6]	G	A	2.925e^-4	0.599	UPSTREAM WDR79 DOWNSTREAM CG42730 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3L	2683677	3L_2683677_SNP [dm3] 3L_2683677_SNP [dm6]	G	C	2.932e^-4	0.599	INTRON Fife
3R	19368199	3R_19368199_SNP [dm3] 3R_23542477_SNP [dm6]	C	T	2.939e^-4	0.599	INTERGENIC
3L	10521438	3L_10521438_SNP [dm3] 3L_10528338_SNP [dm6]	C	G	2.940e^-4	0.599	INTRON A2bp1
3L	5876250	3L_5876250_SNP [dm3] 3L_5883150_SNP [dm6]	C	G	2.940e^-4	0.599	SYNONYMOUS_CODING CG13287	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19380892	2R_19380892_SNP [dm3] 2R_23493369_SNP [dm6]	A	C	2.940e^-4	0.599	INTERGENIC
2L	8325933	2L_8325933_SNP [dm3] 2L_8325933_SNP [dm6]	T	C	2.949e^-4	0.6	UPSTREAM CG7781 INTERGENIC
3L	896058	3L_896058_SNP [dm3] 3L_896058_SNP [dm6]	G	T	2.960e^-4	0.6	UTR_5_PRIME CG34056 DOWNSTREAM CG32479
3R	14603481	3R_14603481_SNP [dm3] 3R_18777759_SNP [dm6]	T	A	2.966e^-4	0.6	INTRON CG7720
X	18835733	X_18835733_SNP [dm3] X_18941700_SNP [dm6]	T	C	2.975e^-4	0.6	INTRON CG43759
3L	5013360	3L_5013360_DEL [dm3] 3L_5013360_DEL [dm6]	TCGT	T	2.978e^-4	0.6	INTRON Con
3L	5990057	3L_5990057_SNP [dm3] 3L_5996957_SNP [dm6]	C	G	2.982e^-4	0.6	UPSTREAM PVRAP INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	4071289	X_4071289_INS [dm3] X_4177256_INS [dm6]	T	TGAAACTGAT	2.984e^-4	0.6	INTRON Fas2	TF binding site mE1_TFBS_HSA
2L	16433407	2L_16433407_SNP [dm3] 2L_16433407_SNP [dm6]	T	G	2.984e^-4	0.6	INTRON CG5888
X	14073579	X_14073579_SNP [dm3] X_14179546_SNP [dm6]	A	C	2.984e^-4	0.6	INTERGENIC
2L	9944864	2L_9944864_SNP [dm3] 2L_9944864_SNP [dm6]	C	T	2.986e^-4	0.6	INTRON CG5853
2L	13984136	2L_13984136_SNP [dm3] 2L_13984136_SNP [dm6]	T	C	2.991e^-4	0.6	SYNONYMOUS_CODING rk DOWNSTREAM NimC2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18889391	3R_18889391_SNP [dm3] 3R_23063669_SNP [dm6]	A	C	2.996e^-4	0.6	SYNONYMOUS_CODING CG17111 DOWNSTREAM Ublcp1	TF binding site mE1_TFBS_chinmo
3L	9973440	3L_9973440_SNP [dm3] 3L_9980340_SNP [dm6]	C	A	3.003e^-4	0.6	INTRON dpr6
3L	7820273	3L_7820273_DEL [dm3] 3L_7827173_DEL [dm6]	TT	T	3.003e^-4	0.6	UTR_5_PRIME Pdp1 INTRON Pdp1
X	14720521	X_14720521_SNP [dm3] X_14826488_SNP [dm6]	A	T	3.004e^-4	0.6	UPSTREAM rut DOWNSTREAM CG14408 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	20524228	2L_20524228_SNP [dm3] 2L_20524228_SNP [dm6]	A	T	3.004e^-4	0.6	INTERGENIC
2L	15630277	2L_15630277_SNP [dm3] 2L_15630277_SNP [dm6]	C	G	3.006e^-4	0.6	NON_SYNONYMOUS_CODING CG18480 DOWNSTREAM CG7631
2R	18273943	2R_18273943_SNP [dm3] 2R_22386438_SNP [dm6]	C	A	3.007e^-4	0.6	UTR_5_PRIME CG13506 UPSTREAM CR44757
2R	12474198	2R_12474198_SNP [dm3] 2R_16586693_SNP [dm6]	A	T	3.012e^-4	0.601	UTR_3_PRIME RpLP2 DOWNSTREAM CG8311	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	7320543	3R_7320543_SNP [dm3] 3R_11494821_SNP [dm6]	A	T	3.025e^-4	0.601	INTERGENIC
2L	7941994	2L_7941994_SNP [dm3] 2L_7941994_SNP [dm6]	C	G	3.030e^-4	0.601	INTRON Snoo
2L	5428852	2L_5428852_SNP [dm3] 2L_5428852_SNP [dm6]	A	G	3.036e^-4	0.601	INTERGENIC
2R	9439303	2R_9439303_SNP [dm3] 2R_13551798_SNP [dm6]	T	A	3.037e^-4	0.601	UPSTREAM CG33156 INTRON CG33156
X	4071619	X_4071619_SNP [dm3] X_4177586_SNP [dm6]	C	T	3.041e^-4	0.601	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19054067	2R_19054067_SNP [dm3] 2R_23166544_SNP [dm6]	G	A	3.042e^-4	0.601	INTRON CG34371	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	3455121	X_3455121_SNP [dm3] X_3561088_SNP [dm6]	A	T	3.046e^-4	0.601	INTRON CG32791 & 1 other
X	4070736	X_4070736_SNP [dm3] X_4176703_SNP [dm6]	G	C	3.046e^-4	0.601	INTRON Fas2
2L	21979570	2L_21979570_SNP [dm3] 2L_21979570_SNP [dm6]	T	A	3.050e^-4	0.601	INTERGENIC
2L	4094871	2L_4094871_SNP [dm3] 2L_4094871_SNP [dm6]	C	G	3.056e^-4	0.601	INTRON ed	TF binding site BDTNP1_TFBS_twi
2L	9388700	2L_9388700_SNP [dm3] 2L_9388700_SNP [dm6]	G	A	3.056e^-4	0.601	INTRON Shawl & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12677045	2R_12677045_SNP [dm3] 2R_16789540_SNP [dm6]	T	C	3.058e^-4	0.601	SYNONYMOUS_CODING CG5522
2R	13809956	2R_13809956_SNP [dm3] 2R_17922451_SNP [dm6]	C	G	3.059e^-4	0.601	INTRON Elk
3R	14602668	3R_14602668_SNP [dm3] 3R_18776946_SNP [dm6]	T	C	3.064e^-4	0.601	INTRON CG7720
3L	6339137	3L_6339137_SNP [dm3] 3L_6346037_SNP [dm6]	A	G	3.064e^-4	0.601	INTRON CG13300	TF binding site mE1_TFBS_Kr
2R	17143430	2R_17143430_SNP [dm3] 2R_21255925_SNP [dm6]	A	T	3.072e^-4	0.601	UTR_5_PRIME Rgk3
3L	18021679	3L_18021679_SNP [dm3] 3L_18028579_SNP [dm6]	C	T	3.073e^-4	0.601	INTRON Eip75B
2L	6100997	2L_6100997_SNP [dm3] 2L_6100997_SNP [dm6]	A	T	3.076e^-4	0.601	INTRON stai	TF binding site BDTNP1_TFBS_dl
X	6151319	X_6151319_SNP [dm3] X_6257286_SNP [dm6]	T	C	3.079e^-4	0.601	UTR_3_PRIME Spx DOWNSTREAM schlank
3R	13915413	3R_13915413_SNP [dm3] 3R_18089691_SNP [dm6]	G	A	3.081e^-4	0.601	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	3451909	3R_3451909_SNP [dm3] 3R_7626187_SNP [dm6]	A	T	3.081e^-4	0.601	DOWNSTREAM CR44332 INTRON CG34127
X	9849341	X_9849341_SNP [dm3] X_9955308_SNP [dm6]	C	T	3.082e^-4	0.601	INTERGENIC
2L	2871798	2L_2871798_SNP [dm3] 2L_2871798_SNP [dm6]	C	T	3.092e^-4	0.601	INTRON CG31694	TF binding site mE1_TFBS_cad
3L	4814829	3L_4814829_SNP [dm3] 3L_4814829_SNP [dm6]	A	G	3.092e^-4	0.601	SYNONYMOUS_CODING Dhc64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10398097	3R_10398097_SNP [dm3] 3R_14572375_SNP [dm6]	C	A	3.100e^-4	0.601	INTRON CG7987	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9388693	2L_9388693_SNP [dm3] 2L_9388693_SNP [dm6]	C	A	3.103e^-4	0.601	INTRON Shawl & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17455467	X_17455467_SNP [dm3] X_17561434_SNP [dm6]	G	T	3.104e^-4	0.601	UPSTREAM CG43658 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	6305556	3L_6305556_SNP [dm3] 3L_6312456_SNP [dm6]	G	A	3.115e^-4	0.601	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	6447232	3L_6447232_SNP [dm3] 3L_6454132_SNP [dm6]	A	C	3.120e^-4	0.601	INTRON CG42747
3L	14142418	3L_14142418_SNP [dm3] 3L_14149318_SNP [dm6]	C	G	3.122e^-4	0.601	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13978498	2R_13978498_SNP [dm3] 2R_18090993_SNP [dm6]	A	T	3.131e^-4	0.601	INTRON CG34386	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_hb
2L	7942117	2L_7942117_SNP [dm3] 2L_7942117_SNP [dm6]	T	G	3.133e^-4	0.601	INTRON Snoo
2L	17524388	2L_17524388_SNP [dm3] 2L_17524388_SNP [dm6]	G	C	3.136e^-4	0.601	NON_SYNONYMOUS_CODING CG15143 INTRON Dhc36C
2L	5777811	2L_5777811_SNP [dm3] 2L_5777811_SNP [dm6]	G	C	3.139e^-4	0.601	INTRON CG9171	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	8207960	2R_8207960_SNP [dm3] 2R_12320455_SNP [dm6]	A	T	3.143e^-4	0.601	UPSTREAM CG13163 DOWNSTREAM CR44316 INTERGENIC
3L	5816946	3L_5816946_SNP [dm3] 3L_5823846_SNP [dm6]	T	A	3.145e^-4	0.601	INTRON vn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13914316	2L_13914316_SNP [dm3] 2L_13914316_SNP [dm6]	T	A	3.147e^-4	0.601	UPSTREAM Ance-3 INTERGENIC
3R	4164284	3R_4164284_SNP [dm3] 3R_8338562_SNP [dm6]	C	T	3.153e^-4	0.601	INTERGENIC
2L	13338830	2L_13338830_SNP [dm3] 2L_13338830_SNP [dm6]	G	T	3.154e^-4	0.601	INTERGENIC
3L	14147721	3L_14147721_SNP [dm3] 3L_14154621_SNP [dm6]	A	C	3.157e^-4	0.601	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3091486	2L_3091486_SNP [dm3] 2L_3091486_SNP [dm6]	T	A	3.158e^-4	0.601	UPSTREAM toc INTRON toc	TF binding site mE1_TFBS_HSA
2R	13784480	2R_13784480_SNP [dm3] 2R_17896975_SNP [dm6]	G	T	3.160e^-4	0.601	INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8478454	X_8478454_SNP [dm3] X_8584421_SNP [dm6]	G	A	3.161e^-4	0.601	INTRON CG12065
2R	4086830	2R_4086830_SNP [dm3] 2R_8199325_SNP [dm6]	A	G	3.165e^-4	0.601	INTRON LRP1
2R	18051978	2R_18051978_SNP [dm3] 2R_22164473_SNP [dm6]	G	C	3.167e^-4	0.601	NON_SYNONYMOUS_CODING CG34206 INTRON a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5228684	X_5228684_SNP [dm3] X_5334651_SNP [dm6]	C	T	3.169e^-4	0.601	DOWNSTREAM CanB INTERGENIC
2L	17766205	2L_17766205_INS [dm3] 2L_17766205_INS [dm6]	C	CACAAGGGC	3.171e^-4	0.601	INTRON CadN
3R	3482884	3R_3482884_SNP [dm3] 3R_7657162_SNP [dm6]	C	T	3.175e^-4	0.601	INTERGENIC
2R	15085709	2R_15085709_SNP [dm3] 2R_19198204_SNP [dm6]	A	G	3.175e^-4	0.601	INTRON hppy
2R	18135014	2R_18135014_DEL [dm3] 2R_22247509_DEL [dm6]	GG	G	3.177e^-4	0.601	INTRON dve	regulatory region REDfly_CRMs
2L	20524302	2L_20524302_SNP [dm3] 2L_20524302_SNP [dm6]	T	C	3.181e^-4	0.601	INTERGENIC
2L	11383533	2L_11383533_SNP [dm3] 2L_11383533_SNP [dm6]	C	A	3.185e^-4	0.601	INTERGENIC	regulatory region REDfly_CRMs
2R	15935023	2R_15935023_SNP [dm3] 2R_20047518_SNP [dm6]	A	T	3.187e^-4	0.601	INTERGENIC
X	15865144	X_15865144_SNP [dm3] X_15971111_SNP [dm6]	T	A	3.189e^-4	0.601	INTRON mmd	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12450775	2L_12450775_SNP [dm3] 2L_12450775_SNP [dm6]	T	G	3.191e^-4	0.601	NON_SYNONYMOUS_CODING Oatp33Eb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12472711	2L_12472711_SNP [dm3] 2L_12472711_SNP [dm6]	T	C	3.202e^-4	0.602	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11843037	3L_11843037_SNP [dm3] 3L_11849937_SNP [dm6]	T	C	3.203e^-4	0.602	DOWNSTREAM CG44837 INTERGENIC
2L	8915138	2L_8915138_SNP [dm3] 2L_8915138_SNP [dm6]	G	T	3.213e^-4	0.602	INTRON CG34398
2L	9968097	2L_9968097_SNP [dm3] 2L_9968097_SNP [dm6]	C	T	3.217e^-4	0.602	SYNONYMOUS_CODING RpL13 UPSTREAM Dref	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	2532551	3L_2532551_SNP [dm3] 3L_2532551_SNP [dm6]	T	C	3.218e^-4	0.602	INTRON Spn

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.506e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2626 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	12084728	3L_12084728_SNP [dm3] 3L_12091628_SNP [dm6]	C	A	2.738e^-7	0.401	INTERGENIC
3L	9515268	3L_9515268_SNP [dm3] 3L_9522168_SNP [dm6]	A	T	5.720e^-7	0.401	INTRON CG33700
2R	18278806	2R_18278806_SNP [dm3] 2R_22391301_SNP [dm6]	A	G	7.145e^-7	0.401	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12084748	3L_12084748_SNP [dm3] 3L_12091648_SNP [dm6]	C	T	9.271e^-7	0.401	INTERGENIC
3L	12084742	3L_12084742_SNP [dm3] 3L_12091642_SNP [dm6]	C	G	1.101e^-6	0.401	INTERGENIC
3L	7389703	3L_7389703_SNP [dm3] 3L_7396603_SNP [dm6]	A	C	1.285e^-6	0.401	SYNONYMOUS_CODING CG32379 DOWNSTREAM CG8563	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25547341	3R_25547341_SNP [dm3] 3R_29721619_SNP [dm6]	A	G	1.787e^-6	0.406	UPSTREAM CG34296 INTRON CG15506	TF binding site mE1_TFBS_chinmo
3L	12084593	3L_12084593_SNP [dm3] 3L_12091493_SNP [dm6]	A	C	1.963e^-6	0.406	INTERGENIC
2R	8660816	2R_8660816_SNP [dm3] 2R_12773311_SNP [dm6]	T	C	2.556e^-6	0.406	INTERGENIC
3R	25547272	3R_25547272_SNP [dm3] 3R_29721550_SNP [dm6]	A	G	2.787e^-6	0.406	UPSTREAM CG34296 INTRON CG15506	TF binding site mE1_TFBS_chinmo
2L	9915180	2L_9915180_SNP [dm3] 2L_9915180_SNP [dm6]	C	A	2.805e^-6	0.406	UPSTREAM yip2 DOWNSTREAM Srp54 INTERGENIC
2L	13819603	2L_13819603_SNP [dm3] 2L_13819603_SNP [dm6]	C	T	2.857e^-6	0.406	UTR_3_PRIME Sos	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	16529529	2L_16529529_SNP [dm3] 2L_16529529_SNP [dm6]	T	A	3.004e^-6	0.406	UPSTREAM snoRNA:Me28S-C1237 INTRON CG5953	TF binding site mE1_TFBS_cnc
2L	13318031	2L_13318031_SNP [dm3] 2L_13318031_SNP [dm6]	G	C	3.034e^-6	0.406	INTRON CG43778
2L	13603134	2L_13603134_SNP [dm3] 2L_13603134_SNP [dm6]	G	C	3.475e^-6	0.434	INTRON kuz
2L	9914936	2L_9914936_SNP [dm3] 2L_9914936_SNP [dm6]	A	T	3.836e^-6	0.449	UTR_3_PRIME Srp54 UPSTREAM yip2
3L	6339111	3L_6339111_SNP [dm3] 3L_6346011_SNP [dm6]	C	T	4.242e^-6	0.468	INTRON CG13300	TF binding site mE1_TFBS_Kr
3L	12084611	3L_12084611_SNP [dm3] 3L_12091511_SNP [dm6]	T	G	4.824e^-6	0.502	INTERGENIC
X	18373380	X_18373380_SNP [dm3] X_18479347_SNP [dm6]	C	A	5.653e^-6	0.515	UTR_5_PRIME CG32547 UPSTREAM CR45714 DOWNSTREAM Hayan
3L	12084662	3L_12084662_SNP [dm3] 3L_12091562_SNP [dm6]	A	G	5.719e^-6	0.515	INTERGENIC
2R	13731338	2R_13731338_SNP [dm3] 2R_17843833_SNP [dm6]	T	A	5.764e^-6	0.515	UTR_5_PRIME olf186-F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17260591	2R_17260591_SNP [dm3] 2R_21373086_SNP [dm6]	C	G	6.499e^-6	0.53	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9911839	2L_9911839_SNP [dm3] 2L_9911839_SNP [dm6]	G	T	7.062e^-6	0.53	INTRON Etl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9911855	2L_9911855_SNP [dm3] 2L_9911855_SNP [dm6]	T	C	7.925e^-6	0.53	INTRON Etl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8080398	2L_8080398_SNP [dm3] 2L_8080398_SNP [dm6]	A	G	8.776e^-6	0.53	SYNONYMOUS_CODING Mcr	TF binding site mE1_TFBS_sens
X	9044676	X_9044676_SNP [dm3] X_9150643_SNP [dm6]	T	C	8.904e^-6	0.53	SYNONYMOUS_CODING dalao	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17787281	3L_17787281_SNP [dm3] 3L_17794181_SNP [dm6]	T	C	9.640e^-6	0.53	NON_SYNONYMOUS_CODING CG42816
X	10852890	X_10852890_SNP [dm3] X_10958857_SNP [dm6]	A	C	9.766e^-6	0.53	INTRON Myo10A
2L	13983778	2L_13983778_SNP [dm3] 2L_13983778_SNP [dm6]	T	A	1.018e^-5	0.53	DOWNSTREAM NimC2 INTRON rk	TF binding site mE1_TFBS_chinmo
3L	6339137	3L_6339137_SNP [dm3] 3L_6346037_SNP [dm6]	A	G	1.055e^-5	0.53	INTRON CG13300	TF binding site mE1_TFBS_Kr
X	21837135	X_21837135_SNP [dm3] X_22435300_SNP [dm6]	T	A	1.081e^-5	0.53	INTERGENIC	transposable element FlyBase
X	21837054	X_21837054_DEL [dm3] X_22435219_DEL [dm6]	GG	G	1.113e^-5	0.53	INTERGENIC	transposable element FlyBase
X	4858589	X_4858589_SNP [dm3] X_4964556_SNP [dm6]	T	C	1.155e^-5	0.53	INTRON CR44833
2L	3391328	2L_3391328_SNP [dm3] 2L_3391328_SNP [dm6]	C	T	1.199e^-5	0.53	INTERGENIC
3L	821970	3L_821970_SNP [dm3] 3L_821970_SNP [dm6]	T	G	1.264e^-5	0.53	DOWNSTREAM CR43883 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	10852835	X_10852835_SNP [dm3] X_10958802_SNP [dm6]	G	C	1.280e^-5	0.53	INTRON Myo10A
3L	14971334	3L_14971334_SNP [dm3] 3L_14978234_SNP [dm6]	T	A	1.330e^-5	0.53	UPSTREAM CR43432 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	821968	3L_821968_SNP [dm3] 3L_821968_SNP [dm6]	C	A	1.341e^-5	0.53	DOWNSTREAM CR43883 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	13603083	2L_13603083_SNP [dm3] 2L_13603083_SNP [dm6]	A	G	1.355e^-5	0.53	INTRON kuz
2L	9911817	2L_9911817_SNP [dm3] 2L_9911817_SNP [dm6]	T	G	1.407e^-5	0.53	INTRON Etl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25547286	3R_25547286_MNP [dm3] 3R_29721564_MNP [dm6]	GAA	TTT	1.420e^-5	0.53	UPSTREAM CG34296 INTRON CG15506	TF binding site mE1_TFBS_chinmo
3L	4747597	3L_4747597_SNP [dm3] 3L_4747597_SNP [dm6]	G	A	1.423e^-5	0.53	UPSTREAM CR43882 INTRON RhoGEF64C
3L	12414312	3L_12414312_SNP [dm3] 3L_12421212_SNP [dm6]	C	T	1.423e^-5	0.53	INTERGENIC
X	18373379	X_18373379_SNP [dm3] X_18479346_SNP [dm6]	A	T	1.446e^-5	0.53	UTR_5_PRIME CG32547 UPSTREAM CR45714 DOWNSTREAM Hayan
2L	11377079	2L_11377079_SNP [dm3] 2L_11377079_SNP [dm6]	T	G	1.460e^-5	0.53	INTERGENIC	regulatory region REDfly_CRMs
2R	12392489	2R_12392489_SNP [dm3] 2R_16504984_SNP [dm6]	G	T	1.485e^-5	0.53	INTRON Sema-2a
2L	13863678	2L_13863678_SNP [dm3] 2L_13863678_SNP [dm6]	A	C	1.556e^-5	0.53	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17792946	3L_17792946_SNP [dm3] 3L_17799846_SNP [dm6]	C	A	1.556e^-5	0.53	INTRON NUCB1	TF binding site BDTNP1_TFBS_twi
2L	8658605	2L_8658605_SNP [dm3] 2L_8658605_SNP [dm6]	C	T	1.565e^-5	0.53	INTRON Sema-1a
X	3645034	X_3645034_SNP [dm3] X_3751001_SNP [dm6]	C	T	1.587e^-5	0.53	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4747608	3L_4747608_SNP [dm3] 3L_4747608_SNP [dm6]	T	C	1.587e^-5	0.53	UPSTREAM CR43882 INTRON RhoGEF64C
3L	5396833	3L_5396833_SNP [dm3] 3L_5403733_SNP [dm6]	C	T	1.591e^-5	0.53	INTERGENIC
2L	9433463	2L_9433463_SNP [dm3] 2L_9433463_SNP [dm6]	G	A	1.600e^-5	0.53	SYNONYMOUS_CODING scat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10233299	3L_10233299_SNP [dm3] 3L_10240199_SNP [dm6]	A	C	1.607e^-5	0.53	EXON CR45403
X	8173006	X_8173006_SNP [dm3] X_8278973_SNP [dm6]	A	C	1.610e^-5	0.53	UTR_3_PRIME nAChRalpha3
2L	14082718	2L_14082718_SNP [dm3] 2L_14082718_SNP [dm6]	A	T	1.641e^-5	0.53	INTRON nAChRalpha5	TF binding site mE1_TFBS_zfh1
3R	25547412	3R_25547412_SNP [dm3] 3R_29721690_SNP [dm6]	T	C	1.653e^-5	0.53	SYNONYMOUS_CODING CG15506 UPSTREAM CG34296	TF binding site mE1_TFBS_chinmo
2L	9911811	2L_9911811_SNP [dm3] 2L_9911811_SNP [dm6]	G	A	1.699e^-5	0.53	INTRON Etl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25547367	3R_25547367_SNP [dm3] 3R_29721645_SNP [dm6]	C	T	1.710e^-5	0.53	SPLICE_SITE_REGION CG15506 SYNONYMOUS_CODING CG15506 UPSTREAM CG34296	TF binding site mE1_TFBS_chinmo
3L	16661482	3L_16661482_SNP [dm3] 3L_16668382_SNP [dm6]	T	A	1.720e^-5	0.53	UPSTREAM Galphaf INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	21837631	X_21837631_SNP [dm3] X_22435796_SNP [dm6]	A	G	1.726e^-5	0.53	INTERGENIC	transposable element FlyBase
3L	12414317	3L_12414317_INS [dm3] 3L_12421217_INS [dm6]	A	AA	1.809e^-5	0.547	INTERGENIC
2R	19373001	2R_19373001_DEL [dm3] 2R_23485478_DEL [dm6]	TT	T	1.856e^-5	0.552	INTRON CG43795
2R	18055527	2R_18055527_SNP [dm3] 2R_22168022_SNP [dm6]	C	T	2.080e^-5	0.594	INTRON a	TF binding site mE1_TFBS_chinmo
2R	16461403	2R_16461403_SNP [dm3] 2R_20573898_SNP [dm6]	A	G	2.087e^-5	0.594	INTRON qsm	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14117009	3L_14117009_INS [dm3] 3L_14123909_INS [dm6]	C	CC	2.111e^-5	0.594	INTRON Sox21b
3R	17552598	3R_17552598_SNP [dm3] 3R_21726876_SNP [dm6]	A	T	2.123e^-5	0.594	INTERGENIC
X	3603372	X_3603372_DEL [dm3] X_3709339_DEL [dm6]	GTCGATGGAAAAGG...	G	2.207e^-5	0.606	INTRON Rala
2R	13809956	2R_13809956_SNP [dm3] 2R_17922451_SNP [dm6]	C	G	2.229e^-5	0.606	INTRON Elk
3L	10068022	3L_10068022_SNP [dm3] 3L_10074922_SNP [dm6]	A	G	2.276e^-5	0.607	INTRON dpr6
2R	18453411	2R_18453411_SNP [dm3] 2R_22565906_SNP [dm6]	G	A	2.300e^-5	0.607	SYNONYMOUS_CODING dnr1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21837570	X_21837570_SNP [dm3] X_22435735_SNP [dm6]	G	C	2.368e^-5	0.617	INTERGENIC	transposable element FlyBase
3L	17784937	3L_17784937_SNP [dm3] 3L_17791837_SNP [dm6]	C	A	2.432e^-5	0.62	UPSTREAM CG42815 DOWNSTREAM CG42816 INTERGENIC
2R	8663846	2R_8663846_SNP [dm3] 2R_12776341_SNP [dm6]	A	G	2.556e^-5	0.62	UPSTREAM CR45266 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	12084598	3L_12084598_SNP [dm3] 3L_12091498_SNP [dm6]	C	T	2.558e^-5	0.62	INTERGENIC
2R	17066028	2R_17066028_SNP [dm3] 2R_21178523_SNP [dm6]	G	T	2.592e^-5	0.62	SYNONYMOUS_CODING CG4286 UPSTREAM Pu INTRON Pu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10064884	3L_10064884_DEL [dm3] 3L_10071784_DEL [dm6]	GCGTCATTAACAT...	G	2.649e^-5	0.62	CODON_DELETION dpr6 INTRON dpr6	TF binding site mE1_TFBS_HSA
2R	17964172	2R_17964172_SNP [dm3] 2R_22076667_SNP [dm6]	T	C	2.654e^-5	0.62	SYNONYMOUS_CODING GlcT-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	17062876	X_17062876_SNP [dm3] X_17168843_SNP [dm6]	A	T	2.658e^-5	0.62	INTRON baz
3L	4747605	3L_4747605_SNP [dm3] 3L_4747605_SNP [dm6]	A	G	2.688e^-5	0.62	UPSTREAM CR43882 INTRON RhoGEF64C
2L	13338830	2L_13338830_SNP [dm3] 2L_13338830_SNP [dm6]	G	T	2.710e^-5	0.62	INTERGENIC
X	4383385	X_4383385_SNP [dm3] X_4489352_SNP [dm6]	T	C	2.721e^-5	0.62	INTRON CR32773
3L	13006450	3L_13006450_SNP [dm3] 3L_13013350_SNP [dm6]	A	C	2.784e^-5	0.62	SYNONYMOUS_CODING MICAL-like	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3322040	X_3322040_SNP [dm3] X_3428007_SNP [dm6]	T	G	2.803e^-5	0.62	UPSTREAM tRNA:CR32493 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1558641	3L_1558641_SNP [dm3] 3L_1558641_SNP [dm6]	T	A	2.810e^-5	0.62	UPSTREAM Pex10 & 1 other INTRON Pex10	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3776373	3L_3776373_SNP [dm3] 3L_3776373_SNP [dm6]	C	T	2.896e^-5	0.627	INTRON CG32264	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	23777355	3R_23777355_SNP [dm3] 3R_27951633_SNP [dm6]	C	T	2.910e^-5	0.627	SYNONYMOUS_CODING Gp93 DOWNSTREAM CG4951	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12414348	3L_12414348_SNP [dm3] 3L_12421248_SNP [dm6]	G	C	2.980e^-5	0.632	INTERGENIC
3L	9514913	3L_9514913_SNP [dm3] 3L_9521813_SNP [dm6]	G	A	3.018e^-5	0.632	INTRON CG33700
3L	6014276	3L_6014276_SNP [dm3] 3L_6021176_SNP [dm6]	C	T	3.077e^-5	0.632	INTRON PVRAP
2R	18278661	2R_18278661_SNP [dm3] 2R_22391156_SNP [dm6]	G	A	3.080e^-5	0.632	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	11586586	3R_11586586_SNP [dm3] 3R_15760864_SNP [dm6]	T	G	3.102e^-5	0.632	INTERGENIC
3L	13914268	3L_13914268_SNP [dm3] 3L_13921168_SNP [dm6]	C	A	3.180e^-5	0.636	INTRON Rgl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2L	2880192	2L_2880192_SNP [dm3] 2L_2880192_SNP [dm6]	T	C	3.191e^-5	0.636	SYNONYMOUS_CODING betaggt-II DOWNSTREAM NTPase	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	9871567	2L_9871567_SNP [dm3] 2L_9871567_SNP [dm6]	C	A	3.255e^-5	0.642	INTRON nAChRalpha6
2L	7923975	2L_7923975_SNP [dm3] 2L_7923975_SNP [dm6]	G	A	3.289e^-5	0.642	INTRON Snoo
2L	11379370	2L_11379370_SNP [dm3] 2L_11379370_SNP [dm6]	T	G	3.354e^-5	0.648	INTERGENIC	regulatory region REDfly_CRMs
2L	12157657	2L_12157657_SNP [dm3] 2L_12157657_SNP [dm6]	A	C	3.400e^-5	0.65	INTRON CG31760
2L	14066971	2L_14066971_SNP [dm3] 2L_14066971_SNP [dm6]	A	G	3.581e^-5	0.678	INTRON nAChRalpha5
2R	17231837	2R_17231837_SNP [dm3] 2R_21344332_SNP [dm6]	C	G	3.640e^-5	0.681	NON_SYNONYMOUS_CODING CG15666
2R	14768241	2R_14768241_SNP [dm3] 2R_18880736_SNP [dm6]	A	T	3.696e^-5	0.681	INTRON sano
3R	21790664	3R_21790664_SNP [dm3] 3R_25964942_SNP [dm6]	C	T	3.708e^-5	0.681	INTRON boss	TF binding site mE1_TFBS_inv
3L	11728415	3L_11728415_SNP [dm3] 3L_11735315_SNP [dm6]	C	T	3.786e^-5	0.689	UTR_3_PRIME CG6024 DOWNSTREAM CG6024
3R	24057516	3R_24057516_SNP [dm3] 3R_28231794_SNP [dm6]	G	A	3.940e^-5	0.708	INTRON CG34354
X	21846019	X_21846019_SNP [dm3] X_22444183_SNP [dm6]	T	G	3.979e^-5	0.708	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	11377083	2L_11377083_SNP [dm3] 2L_11377083_SNP [dm6]	C	T	4.083e^-5	0.708	INTERGENIC	regulatory region REDfly_CRMs
2R	17474253	2R_17474253_SNP [dm3] 2R_21586748_SNP [dm6]	G	T	4.232e^-5	0.708	INTERGENIC	TF binding site mE1_TFBS_cad
X	21837678	X_21837678_MNP [dm3] X_22435843_MNP [dm6]	AGT	GCA	4.272e^-5	0.708	INTERGENIC	transposable element FlyBase
3L	14563127	3L_14563127_SNP [dm3] 3L_14570027_SNP [dm6]	C	A	4.306e^-5	0.708	INTERGENIC
2L	11379658	2L_11379658_SNP [dm3] 2L_11379658_SNP [dm6]	G	A	4.329e^-5	0.708	INTERGENIC	regulatory region REDfly_CRMs
X	19045894	X_19045894_SNP [dm3] X_19151861_SNP [dm6]	C	T	4.331e^-5	0.708	SYNONYMOUS_CODING RhoGAP18B INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl
3L	14563211	3L_14563211_SNP [dm3] 3L_14570111_SNP [dm6]	A	G	4.343e^-5	0.708	INTERGENIC
3L	822074	3L_822074_SNP [dm3] 3L_822074_SNP [dm6]	A	T	4.453e^-5	0.708	DOWNSTREAM CR43883 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	19680833	3L_19680833_SNP [dm3] 3L_19687733_SNP [dm6]	G	T	4.516e^-5	0.708	SYNONYMOUS_CODING Gbeta76C UPSTREAM CG8765	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	19318944	3L_19318944_SNP [dm3] 3L_19325844_SNP [dm6]	A	C	4.540e^-5	0.708	INTRON pip
3R	7367748	3R_7367748_SNP [dm3] 3R_11542026_SNP [dm6]	G	T	4.669e^-5	0.708	INTRON dpr4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	14563110	3L_14563110_SNP [dm3] 3L_14570010_SNP [dm6]	G	C	4.700e^-5	0.708	INTERGENIC
2L	11617761	2L_11617761_SNP [dm3] 2L_11617761_SNP [dm6]	A	C	4.763e^-5	0.708	INTRON kek2
3R	25547306	3R_25547306_SNP [dm3] 3R_29721584_SNP [dm6]	T	C	4.848e^-5	0.708	UPSTREAM CG34296 INTRON CG15506	TF binding site mE1_TFBS_chinmo
3L	4747593	3L_4747593_SNP [dm3] 3L_4747593_SNP [dm6]	A	T	4.873e^-5	0.708	UPSTREAM CR43882 INTRON RhoGEF64C
X	17062763	X_17062763_SNP [dm3] X_17168730_SNP [dm6]	A	T	4.933e^-5	0.708	INTRON baz
2L	12942896	2L_12942896_SNP [dm3] 2L_12942896_SNP [dm6]	A	T	4.972e^-5	0.708	INTERGENIC
3L	822049	3L_822049_DEL [dm3] 3L_822049_DEL [dm6]	GATATCTG	AC	5.029e^-5	0.708	DOWNSTREAM CR43883 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	9557685	2R_9557685_SNP [dm3] 2R_13670180_SNP [dm6]	A	G	5.189e^-5	0.708	NON_SYNONYMOUS_CODING CG18368 INTRON fas
3L	1444026	3L_1444026_SNP [dm3] 3L_1444026_SNP [dm6]	T	C	5.206e^-5	0.708	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19572858	2R_19572858_SNP [dm3] 2R_23685335_SNP [dm6]	G	T	5.271e^-5	0.708	NON_SYNONYMOUS_CODING l_2_efl DOWNSTREAM St3 INTRON St3	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	8080889	2L_8080889_SNP [dm3] 2L_8080889_SNP [dm6]	C	A	5.293e^-5	0.708	INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	12155576	2L_12155576_SNP [dm3] 2L_12155576_SNP [dm6]	C	T	5.376e^-5	0.708	SYNONYMOUS_CODING CG31760
2R	15421776	2R_15421776_SNP [dm3] 2R_19534271_SNP [dm6]	A	T	5.417e^-5	0.708	INTRON sm
3L	3004072	3L_3004072_DEL [dm3] 3L_3004072_DEL [dm6]	ACATTCA	A	5.451e^-5	0.708	INTRON FMRFaR
3L	7810694	3L_7810694_SNP [dm3] 3L_7817594_SNP [dm6]	G	A	5.479e^-5	0.708	SYNONYMOUS_CODING Pdp1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14204517	3L_14204517_SNP [dm3] 3L_14211417_SNP [dm6]	T	A	5.502e^-5	0.708	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	1558653	3L_1558653_SNP [dm3] 3L_1558653_SNP [dm6]	G	A	5.690e^-5	0.708	SPLICE_SITE_REGION Pex10 UPSTREAM Pex10 & 1 other INTRON Pex10	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1558658	3L_1558658_SNP [dm3] 3L_1558658_SNP [dm6]	G	A	5.690e^-5	0.708	SPLICE_SITE_REGION Pex10 UTR_5_PRIME Pex10 UPSTREAM Pex10 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21845517	X_21845517_SNP [dm3] X_22443681_SNP [dm6]	A	T	5.802e^-5	0.708	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	8139050	3L_8139050_SNP [dm3] 3L_8145950_SNP [dm6]	A	T	5.823e^-5	0.708	INTRON CG13676
X	21837782	X_21837782_SNP [dm3] X_22435947_SNP [dm6]	G	A	5.837e^-5	0.708	INTERGENIC	transposable element FlyBase
3R	13908536	3R_13908536_SNP [dm3] 3R_18082814_SNP [dm6]	T	A	5.844e^-5	0.708	DOWNSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	19219698	3L_19219698_SNP [dm3] 3L_19226598_SNP [dm6]	C	T	5.849e^-5	0.708	INTRON fz2
3L	12414263	3L_12414263_SNP [dm3] 3L_12421163_SNP [dm6]	T	C	5.869e^-5	0.708	INTERGENIC
X	19601287	X_19601287_SNP [dm3] X_19707254_SNP [dm6]	C	T	5.872e^-5	0.708	SYNONYMOUS_CODING meso18E DOWNSTREAM CG14230	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19014395	2R_19014395_DEL [dm3] 2R_23126872_DEL [dm6]	CC	C	5.898e^-5	0.708	UPSTREAM Klp59C DOWNSTREAM CR44455 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13599607	3R_13599607_SNP [dm3] 3R_17773885_SNP [dm6]	G	T	5.987e^-5	0.708	SYNONYMOUS_CODING CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
2L	12586539	2L_12586539_SNP [dm3] 2L_12586539_SNP [dm6]	G	T	6.050e^-5	0.708	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	12011521	2R_12011521_SNP [dm3] 2R_16124016_SNP [dm6]	T	C	6.053e^-5	0.708	UPSTREAM spin INTRON CG30095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_Ubx
3R	23893359	3R_23893359_SNP [dm3] 3R_28067637_SNP [dm6]	G	C	6.112e^-5	0.708	INTRON CG34362
X	14652975	X_14652975_SNP [dm3] X_14758942_SNP [dm6]	A	G	6.138e^-5	0.708	SYNONYMOUS_CODING CG15890	TF binding site BDTNP1_TFBS_da
3L	14563172	3L_14563172_SNP [dm3] 3L_14570072_SNP [dm6]	T	A	6.202e^-5	0.708	INTERGENIC
2L	13881052	2L_13881052_SNP [dm3] 2L_13881052_SNP [dm6]	G	A	6.209e^-5	0.708	INTRON CenG1A
3L	735923	3L_735923_SNP [dm3] 3L_735923_SNP [dm6]	T	G	6.222e^-5	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	10668099	2R_10668099_SNP [dm3] 2R_14780594_SNP [dm6]	T	C	6.237e^-5	0.708	INTRON kn	TF binding site mE1_TFBS_HSA
3R	20661776	3R_20661776_SNP [dm3] 3R_24836054_SNP [dm6]	T	C	6.286e^-5	0.708	UPSTREAM sosie INTRON sosie EXON CR45216	TF binding site BDTNP1_TFBS_dl
2R	14354417	2R_14354417_SNP [dm3] 2R_18466912_SNP [dm6]	C	A	6.296e^-5	0.708	INTRON CG30116	TF binding site mE1_TFBS_chinmo
2L	6249378	2L_6249378_SNP [dm3] 2L_6249378_SNP [dm6]	C	T	6.329e^-5	0.708	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9516188	3L_9516188_SNP [dm3] 3L_9523088_SNP [dm6]	T	A	6.488e^-5	0.708	INTRON CG33700
X	15144644	X_15144644_SNP [dm3] X_15250611_SNP [dm6]	G	T	6.539e^-5	0.708	INTERGENIC
3R	23893325	3R_23893325_SNP [dm3] 3R_28067603_SNP [dm6]	G	C	6.555e^-5	0.708	INTRON CG34362
3L	9516172	3L_9516172_SNP [dm3] 3L_9523072_SNP [dm6]	A	G	6.566e^-5	0.708	INTRON CG33700
2R	17780178	2R_17780178_SNP [dm3] 2R_21892673_SNP [dm6]	A	G	6.660e^-5	0.708	INTRON Fili
2L	11122533	2L_11122533_SNP [dm3] 2L_11122533_SNP [dm6]	T	G	6.663e^-5	0.708	UPSTREAM CG14921 DOWNSTREAM Csl4 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14197454	3L_14197454_SNP [dm3] 3L_14204354_SNP [dm6]	G	A	6.734e^-5	0.708	DOWNSTREAM CG32141 INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	8468161	X_8468161_SNP [dm3] X_8574128_SNP [dm6]	T	A	6.744e^-5	0.708	UPSTREAM CG12065 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc
X	16582438	X_16582438_SNP [dm3] X_16688405_SNP [dm6]	G	A	6.782e^-5	0.708	UPSTREAM Sep4 INTRON Sep4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20661781	3R_20661781_SNP [dm3] 3R_24836059_SNP [dm6]	T	G	6.797e^-5	0.708	UPSTREAM sosie INTRON sosie EXON CR45216	TF binding site BDTNP1_TFBS_dl
X	1623188	X_1623188_DEL [dm3] X_1729155_DEL [dm6]	AGTACA	A	6.829e^-5	0.708	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	9452400	X_9452400_INS [dm3] X_9558367_INS [dm6]	A	AG	6.829e^-5	0.708	DOWNSTREAM Cubn EXON CR42767
3R	5720654	3R_5720654_SNP [dm3] 3R_9894932_SNP [dm6]	C	A	6.839e^-5	0.708	INTRON Glut4EF
3R	11586587	3R_11586587_SNP [dm3] 3R_15760865_SNP [dm6]	T	G	6.848e^-5	0.708	INTERGENIC
X	3455121	X_3455121_SNP [dm3] X_3561088_SNP [dm6]	A	T	6.872e^-5	0.708	INTRON CG32791 & 1 other
3R	11676721	3R_11676721_SNP [dm3] 3R_15850999_SNP [dm6]	A	G	6.934e^-5	0.708	SYNONYMOUS_CODING cv-d	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	14119104	3L_14119104_SNP [dm3] 3L_14126004_SNP [dm6]	G	A	6.952e^-5	0.708	SYNONYMOUS_CODING Sox21b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21878382	X_21878382_SNP [dm3] X_22476546_SNP [dm6]	T	C	6.983e^-5	0.708	INTRON CG12576
X	9849309	X_9849309_SNP [dm3] X_9955276_SNP [dm6]	T	C	7.035e^-5	0.708	INTERGENIC
2L	13881044	2L_13881044_SNP [dm3] 2L_13881044_SNP [dm6]	G	A	7.154e^-5	0.708	INTRON CenG1A
3R	4213127	3R_4213127_SNP [dm3] 3R_8387405_SNP [dm6]	C	T	7.248e^-5	0.708	SYNONYMOUS_CODING CG45263 INTRON CG45263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10074540	3L_10074540_SNP [dm3] 3L_10081440_SNP [dm6]	G	A	7.261e^-5	0.708	INTRON dpr6
3R	11676667	3R_11676667_SNP [dm3] 3R_15850945_SNP [dm6]	C	T	7.355e^-5	0.708	SYNONYMOUS_CODING cv-d	TF binding site mE1_TFBS_chinmo
2R	14431588	2R_14431588_SNP [dm3] 2R_18544083_SNP [dm6]	C	G	7.428e^-5	0.708	INTRON Rgk2	TF binding site mE1_TFBS_chinmo
X	21837393	X_21837393_SNP [dm3] X_22435558_SNP [dm6]	C	T	7.457e^-5	0.708	INTERGENIC	transposable element FlyBase
2L	6116050	2L_6116050_SNP [dm3] 2L_6116050_SNP [dm6]	T	G	7.493e^-5	0.708	INTRON stai
2L	11122532	2L_11122532_SNP [dm3] 2L_11122532_SNP [dm6]	G	A	7.503e^-5	0.708	UPSTREAM CG14921 DOWNSTREAM Csl4 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14563210	3L_14563210_SNP [dm3] 3L_14570110_SNP [dm6]	G	T	7.509e^-5	0.708	INTERGENIC
X	3954379	X_3954379_SNP [dm3] X_4060346_SNP [dm6]	G	T	7.792e^-5	0.708	INTERGENIC
X	14652960	X_14652960_SNP [dm3] X_14758927_SNP [dm6]	G	A	7.793e^-5	0.708	SYNONYMOUS_CODING CG15890	TF binding site BDTNP1_TFBS_da
2R	14559503	2R_14559503_SNP [dm3] 2R_18671998_SNP [dm6]	A	C	7.824e^-5	0.708	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	17785817	3L_17785817_SNP [dm3] 3L_17792717_SNP [dm6]	C	T	7.831e^-5	0.708	SYNONYMOUS_CODING CG42816
3L	821996	3L_821996_SNP [dm3] 3L_821996_SNP [dm6]	T	A	7.858e^-5	0.708	DOWNSTREAM CR43883 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9915389	2L_9915389_SNP [dm3] 2L_9915389_SNP [dm6]	A	G	7.913e^-5	0.708	DOWNSTREAM Srp54 INTRON yip2
2R	10837917	2R_10837917_SNP [dm3] 2R_14950412_SNP [dm6]	A	G	7.943e^-5	0.708	UPSTREAM aPKC INTRON aPKC	TF binding site mE1_TFBS_sens
3L	14563206	3L_14563206_SNP [dm3] 3L_14570106_SNP [dm6]	C	A	8.054e^-5	0.708	INTERGENIC
3L	11446846	3L_11446846_SNP [dm3] 3L_11453746_SNP [dm6]	C	G	8.057e^-5	0.708	INTERGENIC
3R	9531350	3R_9531350_SNP [dm3] 3R_13705628_SNP [dm6]	T	C	8.095e^-5	0.708	UPSTREAM Adgf-D INTERGENIC
2R	17780198	2R_17780198_SNP [dm3] 2R_21892693_SNP [dm6]	C	T	8.128e^-5	0.708	INTRON Fili
3L	16028041	3L_16028041_DEL [dm3] 3L_16034941_DEL [dm6]	GCAGT	G	8.135e^-5	0.708	UPSTREAM CG5895 DOWNSTREAM CG42716 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	21845511	X_21845511_SNP [dm3] X_22443675_SNP [dm6]	G	T	8.149e^-5	0.708	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	9915250	2L_9915250_SNP [dm3] 2L_9915250_SNP [dm6]	A	T	8.164e^-5	0.708	UPSTREAM yip2 DOWNSTREAM Srp54 INTERGENIC
2L	7501283	2L_7501283_SNP [dm3] 2L_7501283_SNP [dm6]	T	C	8.168e^-5	0.708	SYNONYMOUS_CODING RapGAP1	TF binding site mE1_TFBS_cad
X	9849354	X_9849354_SNP [dm3] X_9955321_SNP [dm6]	C	T	8.220e^-5	0.708	INTERGENIC
2L	11730933	2L_11730933_SNP [dm3] 2L_11730933_SNP [dm6]	C	A	8.250e^-5	0.708	INTERGENIC
3R	8387770	3R_8387770_SNP [dm3] 3R_12562048_SNP [dm6]	A	G	8.301e^-5	0.708	UTR_5_PRIME Octbeta2R UPSTREAM Octbeta2R INTRON Octbeta2R
2R	12132295	2R_12132295_SNP [dm3] 2R_16244790_SNP [dm6]	G	A	8.338e^-5	0.708	SYNONYMOUS_CODING CngA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	5569469	X_5569469_SNP [dm3] X_5675436_SNP [dm6]	G	T	8.412e^-5	0.708	NON_SYNONYMOUS_CODING Tre1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8289689	X_8289689_SNP [dm3] X_8395656_SNP [dm6]	A	T	8.629e^-5	0.708	INTERGENIC
X	21837768	X_21837768_SNP [dm3] X_22435933_SNP [dm6]	G	A	8.632e^-5	0.708	INTERGENIC	transposable element FlyBase
X	1623184	X_1623184_INS [dm3] X_1729151_INS [dm6]	A	AGAAC	8.698e^-5	0.708	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	13706495	2L_13706495_SNP [dm3] 2L_13706495_SNP [dm6]	G	A	8.731e^-5	0.708	INTRON CG31814
3R	13908845	3R_13908845_SNP [dm3] 3R_18083123_SNP [dm6]	T	C	8.753e^-5	0.708	DOWNSTREAM CG14317 INTERGENIC
3L	21976319	3L_21976319_SNP [dm3] 3L_21983219_SNP [dm6]	C	T	8.781e^-5	0.708	UTR_3_PRIME CG7470 DOWNSTREAM CG7470	regulatory region REDfly_CRMs
3L	13193481	3L_13193481_SNP [dm3] 3L_13200381_SNP [dm6]	G	A	8.821e^-5	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	6249372	2L_6249372_SNP [dm3] 2L_6249372_SNP [dm6]	G	A	8.824e^-5	0.708	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7247202	3R_7247202_SNP [dm3] 3R_11421480_SNP [dm6]	C	T	8.830e^-5	0.708	SYNONYMOUS_CODING ninaG UPSTREAM CG5270	TF binding site mE1_TFBS_cad
2L	8221642	2L_8221642_SNP [dm3] 2L_8221642_SNP [dm6]	C	T	9.112e^-5	0.708	SYNONYMOUS_CODING Pvr UPSTREAM Snx6
3L	17785829	3L_17785829_SNP [dm3] 3L_17792729_SNP [dm6]	A	G	9.184e^-5	0.708	SYNONYMOUS_CODING CG42816
3L	14147707	3L_14147707_SNP [dm3] 3L_14154607_SNP [dm6]	G	T	9.266e^-5	0.708	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8956651	3L_8956651_SNP [dm3] 3L_8963551_SNP [dm6]	C	T	9.331e^-5	0.708	SYNONYMOUS_CODING CG5660	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25434920	3R_25434920_DEL [dm3] 3R_29609198_DEL [dm6]	TGCTACACG	A	9.333e^-5	0.708	DOWNSTREAM Diedel2 INTRON alph
3L	2533275	3L_2533275_SNP [dm3] 3L_2533275_SNP [dm6]	C	T	9.338e^-5	0.708	INTRON Spn
X	21831332	X_21831332_SNP [dm3] http://flybase.org/jbrowse/?data=data%2Fjson%2Fdmel&loc=X%3A21831282..21831382&tracks=Gene_span%2CGene%2Cdgrp_r6%2Csequence_variant&highlight= [dm6]	G	A	9.354e^-5	0.708	INTERGENIC	transposable element FlyBase
3L	13006461	3L_13006461_SNP [dm3] 3L_13013361_SNP [dm6]	C	A	9.369e^-5	0.708	NON_SYNONYMOUS_CODING MICAL-like	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8289691	X_8289691_DEL [dm3] X_8395658_DEL [dm6]	CC	C	9.397e^-5	0.708	INTERGENIC
2L	11379572	2L_11379572_SNP [dm3] 2L_11379572_SNP [dm6]	A	T	9.398e^-5	0.708	INTERGENIC	regulatory region REDfly_CRMs
2R	14354421	2R_14354421_SNP [dm3] 2R_18466916_SNP [dm6]	G	A	9.437e^-5	0.708	INTRON CG30116	TF binding site mE1_TFBS_chinmo
3R	23893336	3R_23893336_SNP [dm3] 3R_28067614_SNP [dm6]	G	A	9.450e^-5	0.708	INTRON CG34362
X	17062976	X_17062976_INS [dm3] X_17168943_INS [dm6]	G	GTTTAATTTC	9.502e^-5	0.708	INTRON baz
3L	21187098	3L_21187098_SNP [dm3] 3L_21193998_SNP [dm6]	C	A	9.502e^-5	0.708	UPSTREAM CG42337 DOWNSTREAM park INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	2533118	3L_2533118_SNP [dm3] 3L_2533118_SNP [dm6]	A	G	9.518e^-5	0.708	INTRON Spn
3L	2533333	3L_2533333_SNP [dm3] 3L_2533333_SNP [dm6]	C	T	9.518e^-5	0.708	INTRON Spn
3L	2533336	3L_2533336_SNP [dm3] 3L_2533336_SNP [dm6]	C	T	9.518e^-5	0.708	INTRON Spn
3L	18021741	3L_18021741_SNP [dm3] 3L_18028641_SNP [dm6]	A	G	9.518e^-5	0.708	INTRON Eip75B
3R	21790644	3R_21790644_SNP [dm3] 3R_25964922_SNP [dm6]	G	C	9.557e^-5	0.708	INTRON boss	TF binding site mE1_TFBS_inv
2L	9871566	2L_9871566_SNP [dm3] 2L_9871566_SNP [dm6]	T	A	9.558e^-5	0.708	INTRON nAChRalpha6
2R	19390102	2R_19390102_SNP [dm3] 2R_23502579_SNP [dm6]	G	T	9.600e^-5	0.708	UPSTREAM CG13559 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7811358	3L_7811358_SNP [dm3] 3L_7818258_SNP [dm6]	T	C	9.633e^-5	0.708	INTRON Pdp1
3L	14203499	3L_14203499_SNP [dm3] 3L_14210399_SNP [dm6]	C	A	9.653e^-5	0.708	INTRON nuf
3R	23465884	3R_23465884_SNP [dm3] 3R_27640162_SNP [dm6]	G	T	9.829e^-5	0.708	SYNONYMOUS_CODING tau DOWNSTREAM tau & 1 other
2L	9942004	2L_9942004_SNP [dm3] 2L_9942004_SNP [dm6]	C	A	9.896e^-5	0.708	SYNONYMOUS_CODING CG5853 UTR_3_PRIME CG4619	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8080829	2L_8080829_SNP [dm3] 2L_8080829_SNP [dm6]	A	T	9.918e^-5	0.708	INTRON Mcr	TF binding site BDTNP1_TFBS_dl
2L	8573687	2L_8573687_SNP [dm3] 2L_8573687_SNP [dm6]	C	T	9.925e^-5	0.708	INTRON Sema-1a
2R	14460462	2R_14460462_SNP [dm3] 2R_18572957_SNP [dm6]	A	C	9.938e^-5	0.708	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8080846	2L_8080846_SNP [dm3] 2L_8080846_SNP [dm6]	C	A	1.003e^-4	0.708	INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	12615801	3L_12615801_SNP [dm3] 3L_12622701_SNP [dm6]	A	T	1.004e^-4	0.708	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	6321402	3L_6321402_SNP [dm3] 3L_6328302_SNP [dm6]	A	G	1.005e^-4	0.708	NON_SYNONYMOUS_CODING Or65c
3L	2377907	3L_2377907_SNP [dm3] 3L_2377907_SNP [dm6]	T	A	1.012e^-4	0.708	UTR_5_PRIME CG45186 UPSTREAM CG15877 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8099958	2L_8099958_SNP [dm3] 2L_8099958_SNP [dm6]	A	T	1.012e^-4	0.708	INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9678374	X_9678374_SNP [dm3] X_9784341_SNP [dm6]	C	A	1.017e^-4	0.708	INTRON CG32698	TF binding site mE1_TFBS_inv
X	8809178	X_8809178_SNP [dm3] X_8915145_SNP [dm6]	T	G	1.026e^-4	0.708	INTRON rdgA
X	10852764	X_10852764_SNP [dm3] X_10958731_SNP [dm6]	T	G	1.029e^-4	0.708	INTRON Myo10A
2R	18142985	2R_18142985_SNP [dm3] 2R_22255480_SNP [dm6]	G	T	1.029e^-4	0.708	INTRON dve	TF binding site mE1_TFBS_sens
2L	9871560	2L_9871560_DEL [dm3] 2L_9871560_DEL [dm6]	AA	A	1.035e^-4	0.708	INTRON nAChRalpha6
2R	19372944	2R_19372944_SNP [dm3] 2R_23485421_SNP [dm6]	C	G	1.039e^-4	0.708	INTRON CG43795
2R	17780180	2R_17780180_SNP [dm3] 2R_21892675_SNP [dm6]	G	T	1.041e^-4	0.708	INTRON Fili
2R	14354419	2R_14354419_SNP [dm3] 2R_18466914_SNP [dm6]	C	T	1.041e^-4	0.708	INTRON CG30116	TF binding site mE1_TFBS_chinmo
2L	13820731	2L_13820731_DEL [dm3] 2L_13820731_DEL [dm6]	TGTAAG	CA	1.044e^-4	0.708	UPSTREAM b DOWNSTREAM Sos INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	21187105	3L_21187105_SNP [dm3] 3L_21194005_SNP [dm6]	T	C	1.045e^-4	0.708	UPSTREAM CG42337 DOWNSTREAM park INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	8650849	3L_8650849_SNP [dm3] 3L_8657749_SNP [dm6]	C	A	1.056e^-4	0.708	INTERGENIC
2R	11238329	2R_11238329_SNP [dm3] 2R_15350824_SNP [dm6]	T	C	1.056e^-4	0.708	INTRON unc-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14374180	3R_14374180_DEL [dm3] 3R_18548458_DEL [dm6]	TCCGTATAT	T	1.066e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17761999	3L_17761999_SNP [dm3] 3L_17768899_SNP [dm6]	G	A	1.070e^-4	0.708	INTERGENIC
2R	15404822	2R_15404822_INS [dm3] 2R_19517317_INS [dm6]	A	TTG	1.073e^-4	0.708	DOWNSTREAM sm INTERGENIC
2L	2259322	2L_2259322_SNP [dm3] 2L_2259322_SNP [dm6]	C	T	1.074e^-4	0.708	DOWNSTREAM CR44788 INTERGENIC
X	21847208	X_21847208_SNP [dm3] X_22445372_SNP [dm6]	T	A	1.074e^-4	0.708	INTRON CG14621	TF binding site BDTNP1_TFBS_dl
3L	11935848	3L_11935848_SNP [dm3] 3L_11942748_SNP [dm6]	A	T	1.076e^-4	0.708	DOWNSTREAM CG5883 INTRON Rpt4R
2L	16801730	2L_16801730_SNP [dm3] 2L_16801730_SNP [dm6]	G	C	1.077e^-4	0.708	DOWNSTREAM CG13280 & 1 other INTERGENIC
X	3030217	X_3030217_SNP [dm3] X_3136184_SNP [dm6]	A	C	1.086e^-4	0.708	INTRON N	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	20288850	2L_20288850_SNP [dm3] 2L_20288850_SNP [dm6]	C	T	1.087e^-4	0.708	INTERGENIC
2R	7347843	2R_7347843_SNP [dm3] 2R_11460338_SNP [dm6]	G	T	1.093e^-4	0.708	INTRON E_Pc_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	7347852	2R_7347852_INS [dm3] 2R_11460347_INS [dm6]	T	TGTGCTT	1.093e^-4	0.708	INTRON E_Pc_	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	22070815	3R_22070815_SNP [dm3] 3R_26245093_SNP [dm6]	T	C	1.096e^-4	0.708	INTRON CR42745
2L	7441312	2L_7441312_SNP [dm3] 2L_7441312_SNP [dm6]	T	C	1.100e^-4	0.708	UTR_5_PRIME CG5973 INTRON CG5973
2R	11117138	2R_11117138_SNP [dm3] 2R_15229633_SNP [dm6]	A	G	1.100e^-4	0.708	SPLICE_SITE_REGION CR44370 INTRON Fs & 1 other EXON CR44370
2R	18150986	2R_18150986_SNP [dm3] 2R_22263481_SNP [dm6]	T	A	1.101e^-4	0.708	INTRON dve
3R	11267317	3R_11267317_SNP [dm3] 3R_15441595_SNP [dm6]	C	A	1.120e^-4	0.708	DOWNSTREAM AdamTS-A INTRON Act88F	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	2406893	2L_2406893_SNP [dm3] 2L_2406893_SNP [dm6]	A	T	1.122e^-4	0.708	INTRON VGlut
2R	18617612	2R_18617612_SNP [dm3] 2R_22730107_SNP [dm6]	G	T	1.122e^-4	0.708	SYNONYMOUS_CODING jbug UPSTREAM jbug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	8468256	X_8468256_SNP [dm3] X_8574223_SNP [dm6]	C	T	1.124e^-4	0.708	UPSTREAM CG12065 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	25546509	3R_25546509_SNP [dm3] 3R_29720787_SNP [dm6]	A	T	1.139e^-4	0.708	INTRON CG15506
2R	10544720	2R_10544720_SNP [dm3] 2R_14657215_SNP [dm6]	T	C	1.153e^-4	0.708	SYNONYMOUS_CODING Adgf-E
X	21878369	X_21878369_SNP [dm3] X_22476533_SNP [dm6]	A	T	1.155e^-4	0.708	INTRON CG12576
3L	14563119	3L_14563119_SNP [dm3] 3L_14570019_SNP [dm6]	T	A	1.160e^-4	0.708	INTERGENIC
3L	9516173	3L_9516173_SNP [dm3] 3L_9523073_SNP [dm6]	G	C	1.165e^-4	0.708	INTRON CG33700
3L	4387241	3L_4387241_SNP [dm3] 3L_4387241_SNP [dm6]	G	A	1.169e^-4	0.708	INTRON slow
2L	7442421	2L_7442421_DEL [dm3] 2L_7442421_DEL [dm6]	TATGCT	T	1.170e^-4	0.708	INTRON CG5973
3R	12197803	3R_12197803_SNP [dm3] 3R_16372081_SNP [dm6]	G	A	1.171e^-4	0.708	EXON CR45193
3L	7390249	3L_7390249_SNP [dm3] 3L_7397149_SNP [dm6]	A	C	1.178e^-4	0.708	NON_SYNONYMOUS_CODING CG32379
3L	7390266	3L_7390266_SNP [dm3] 3L_7397166_SNP [dm6]	A	G	1.178e^-4	0.708	NON_SYNONYMOUS_CODING CG32379
3R	10836293	3R_10836293_SNP [dm3] 3R_15010571_SNP [dm6]	C	A	1.181e^-4	0.708	INTERGENIC
3L	15873688	3L_15873688_SNP [dm3] 3L_15880588_SNP [dm6]	T	G	1.184e^-4	0.708	INTRON pHCl
2L	14075864	2L_14075864_SNP [dm3] 2L_14075864_SNP [dm6]	T	C	1.186e^-4	0.708	INTRON nAChRalpha5	TF binding site mE1_TFBS_chinmo
2L	12554597	2L_12554597_SNP [dm3] 2L_12554597_SNP [dm6]	C	G	1.187e^-4	0.708	INTERGENIC
X	3374472	X_3374472_SNP [dm3] X_3480439_SNP [dm6]	G	A	1.191e^-4	0.708	SYNONYMOUS_CODING CG10804 INTRON CR44999	TF binding site mE1_TFBS_cad
3L	2883787	3L_2883787_SNP [dm3] 3L_2883787_SNP [dm6]	G	C	1.196e^-4	0.708	UTR_3_PRIME spz5 DOWNSTREAM CR44531	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7544806	3L_7544806_SNP [dm3] 3L_7551706_SNP [dm6]	G	A	1.197e^-4	0.708	INTERGENIC
3L	10208838	3L_10208838_SNP [dm3] 3L_10215738_SNP [dm6]	A	G	1.198e^-4	0.708	SYNONYMOUS_CODING CG8065
2L	8573699	2L_8573699_SNP [dm3] 2L_8573699_SNP [dm6]	C	T	1.198e^-4	0.708	INTRON Sema-1a
3R	25853974	3R_25853974_DEL [dm3] 3R_30028252_DEL [dm6]	TA	T	1.203e^-4	0.708	INTRON Axn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4747654	3L_4747654_SNP [dm3] 3L_4747654_SNP [dm6]	A	C	1.209e^-4	0.708	INTRON RhoGEF64C
X	21831713	X_21831713_SNP [dm3] X_22429878_SNP [dm6]	T	C	1.211e^-4	0.708	INTERGENIC	transposable element FlyBase
3R	25098607	3R_25098607_DEL [dm3] 3R_29272885_DEL [dm6]	CC	C	1.214e^-4	0.708	INTERGENIC	regulatory region REDfly_CRMs
X	13608461	X_13608461_DEL [dm3] X_13714428_DEL [dm6]	TT	T	1.219e^-4	0.708	UTR_3_PRIME NnaD INTRON CG9940 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18889406	2R_18889406_DEL [dm3] 2R_23001883_DEL [dm6]	TG	T	1.219e^-4	0.708	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	18889409	2R_18889409_SNP [dm3] 2R_23001886_SNP [dm6]	T	G	1.219e^-4	0.708	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	8081043	2L_8081043_SNP [dm3] 2L_8081043_SNP [dm6]	A	C	1.228e^-4	0.708	INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll
2L	14156263	2L_14156263_SNP [dm3] 2L_14156263_SNP [dm6]	C	T	1.244e^-4	0.708	INTRON CG17341
3L	14097813	3L_14097813_SNP [dm3] 3L_14104713_SNP [dm6]	A	C	1.247e^-4	0.708	SYNONYMOUS_CODING Sox21a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11543417	2R_11543417_SNP [dm3] 2R_15655912_SNP [dm6]	T	G	1.250e^-4	0.708	INTRON CG42524
3L	1237366	3L_1237366_SNP [dm3] 3L_1237366_SNP [dm6]	A	G	1.257e^-4	0.708	SYNONYMOUS_CODING CG9192 INTRON CG9194
2R	17689397	2R_17689397_SNP [dm3] 2R_21801892_SNP [dm6]	G	A	1.265e^-4	0.708	UPSTREAM CG4386 INTERGENIC
3L	6183744	3L_6183744_SNP [dm3] 3L_6190644_SNP [dm6]	A	G	1.267e^-4	0.708	SYNONYMOUS_CODING CG7386	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	21878335	X_21878335_SNP [dm3] X_22476499_SNP [dm6]	G	C	1.271e^-4	0.708	INTRON CG12576
2L	11383533	2L_11383533_SNP [dm3] 2L_11383533_SNP [dm6]	C	A	1.272e^-4	0.708	INTERGENIC	regulatory region REDfly_CRMs
2R	17935689	2R_17935689_SNP [dm3] 2R_22048184_SNP [dm6]	G	A	1.273e^-4	0.708	INTERGENIC
3L	8862122	3L_8862122_SNP [dm3] 3L_8869022_SNP [dm6]	T	C	1.273e^-4	0.708	INTRON dally
X	13063841	X_13063841_SNP [dm3] X_13169808_SNP [dm6]	T	C	1.273e^-4	0.708	INTRON CG34411
2L	12482364	2L_12482364_SNP [dm3] 2L_12482364_SNP [dm6]	T	A	1.273e^-4	0.708	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	12482391	2L_12482391_SNP [dm3] 2L_12482391_SNP [dm6]	C	G	1.273e^-4	0.708	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	19364594	3R_19364594_SNP [dm3] 3R_23538872_SNP [dm6]	G	C	1.276e^-4	0.708	UTR_5_PRIME CG10168
2R	14354338	2R_14354338_SNP [dm3] 2R_18466833_SNP [dm6]	A	G	1.277e^-4	0.708	INTRON CG30116	TF binding site mE1_TFBS_chinmo
2R	18889393	2R_18889393_SNP [dm3] 2R_23001870_SNP [dm6]	G	A	1.287e^-4	0.708	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	7812246	3L_7812246_SNP [dm3] 3L_7819146_SNP [dm6]	A	G	1.296e^-4	0.708	INTRON Pdp1	TF binding site BDTNP1_TFBS_z
X	5564018	X_5564018_SNP [dm3] X_5669985_SNP [dm6]	C	T	1.298e^-4	0.708	DOWNSTREAM Rab18 INTRON CG4119	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21845434	X_21845434_SNP [dm3] X_22443598_SNP [dm6]	G	T	1.303e^-4	0.708	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	11407603	2L_11407603_SNP [dm3] 2L_11407603_SNP [dm6]	C	T	1.303e^-4	0.708	INTERGENIC	regulatory region REDfly_CRMs
X	17455467	X_17455467_SNP [dm3] X_17561434_SNP [dm6]	G	T	1.309e^-4	0.708	UPSTREAM CG43658 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	8080891	2L_8080891_SNP [dm3] 2L_8080891_SNP [dm6]	A	T	1.311e^-4	0.708	INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	9912304	2L_9912304_SNP [dm3] 2L_9912304_SNP [dm6]	C	T	1.317e^-4	0.708	UPSTREAM Srp54 INTRON Etl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	8225217	3L_8225217_SNP [dm3] 3L_8232117_SNP [dm6]	G	A	1.324e^-4	0.708	SYNONYMOUS_CODING CG7213 DOWNSTREAM CR43953
3L	18227875	3L_18227875_SNP [dm3] 3L_18234775_SNP [dm6]	A	C	1.330e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9923352	2L_9923352_SNP [dm3] 2L_9923352_SNP [dm6]	C	T	1.331e^-4	0.708	DOWNSTREAM CG4592 INTRON TbCMF46	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4747642	3L_4747642_SNP [dm3] 3L_4747642_SNP [dm6]	C	T	1.335e^-4	0.708	INTRON RhoGEF64C
X	2696387	X_2696387_SNP [dm3] X_2802354_SNP [dm6]	C	A	1.341e^-4	0.708	INTRON kirre
2R	18162788	2R_18162788_SNP [dm3] 2R_22275283_SNP [dm6]	A	G	1.355e^-4	0.708	INTRON dve	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18373283	2R_18373283_SNP [dm3] 2R_22485778_SNP [dm6]	A	T	1.361e^-4	0.708	SYNONYMOUS_CODING CG4554
3L	16741606	3L_16741606_SNP [dm3] 3L_16748506_SNP [dm6]	T	C	1.380e^-4	0.708	INTERGENIC	TF binding site mE1_TFBS_cad
3L	18021368	3L_18021368_SNP [dm3] 3L_18028268_SNP [dm6]	A	T	1.382e^-4	0.708	INTRON Eip75B
2R	17260116	2R_17260116_SNP [dm3] 2R_21372611_SNP [dm6]	C	T	1.384e^-4	0.708	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4162760	3R_4162760_SNP [dm3] 3R_8337038_SNP [dm6]	C	G	1.386e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4405202	3L_4405202_SNP [dm3] 3L_4405202_SNP [dm6]	C	G	1.388e^-4	0.708	UTR_3_PRIME CG15019 DOWNSTREAM CG15019 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	12202313	2L_12202313_SNP [dm3] 2L_12202313_SNP [dm6]	G	A	1.389e^-4	0.708	INTRON aret
3L	17759516	3L_17759516_SNP [dm3] 3L_17766416_SNP [dm6]	C	A	1.396e^-4	0.708	INTERGENIC	TF binding site mE1_TFBS_inv
X	21845731	X_21845731_SNP [dm3] X_22443895_SNP [dm6]	T	A	1.429e^-4	0.708	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	10668031	2R_10668031_SNP [dm3] 2R_14780526_SNP [dm6]	G	A	1.430e^-4	0.708	INTRON kn	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	8659720	2R_8659720_SNP [dm3] 2R_12772215_SNP [dm6]	A	C	1.432e^-4	0.708	INTERGENIC
2L	14156265	2L_14156265_SNP [dm3] 2L_14156265_SNP [dm6]	G	A	1.435e^-4	0.708	INTRON CG17341
3L	3547796	3L_3547796_SNP [dm3] 3L_3547796_SNP [dm6]	T	A	1.441e^-4	0.708	INTRON Eip63E
3L	19793029	3L_19793029_SNP [dm3] 3L_19799929_SNP [dm6]	A	T	1.441e^-4	0.708	NON_SYNONYMOUS_CODING CG14102 DOWNSTREAM HLH106 INTRON Ir76a
3L	2413221	3L_2413221_DEL [dm3] 3L_2413221_DEL [dm6]	CAT	C	1.443e^-4	0.708	UPSTREAM CG45186 INTRON CG45186
2R	13978498	2R_13978498_SNP [dm3] 2R_18090993_SNP [dm6]	A	T	1.444e^-4	0.708	INTRON CG34386	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_hb
3L	14118810	3L_14118810_SNP [dm3] 3L_14125710_SNP [dm6]	C	T	1.444e^-4	0.708	SYNONYMOUS_CODING Sox21b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12890394	3L_12890394_SNP [dm3] 3L_12897294_SNP [dm6]	G	A	1.447e^-4	0.708	INTERGENIC
3L	8095854	3L_8095854_SNP [dm3] 3L_8102754_SNP [dm6]	C	T	1.455e^-4	0.708	INTRON Ect4	TF binding site mE1_TFBS_cad
2L	9912315	2L_9912315_SNP [dm3] 2L_9912315_SNP [dm6]	A	T	1.460e^-4	0.708	UPSTREAM Srp54 INTRON Etl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	20136440	2R_20136440_SNP [dm3] 2R_24248917_SNP [dm6]	T	C	1.460e^-4	0.708	DOWNSTREAM Ir60a INTRON nord	TF binding site mE1_TFBS_chinmo
2R	18151006	2R_18151006_SNP [dm3] 2R_22263501_SNP [dm6]	G	C	1.461e^-4	0.708	INTRON dve
3L	7810961	3L_7810961_DEL [dm3] 3L_7817861_DEL [dm6]	TT	G	1.462e^-4	0.708	INTRON Pdp1	TF binding site mE1_TFBS_cad
2R	18278767	2R_18278767_SNP [dm3] 2R_22391262_SNP [dm6]	C	T	1.465e^-4	0.708	SPLICE_SITE_REGION CG13506 INTRON CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5080559	2L_5080559_SNP [dm3] 2L_5080559_SNP [dm6]	T	A	1.475e^-4	0.708	INTRON pgant5
X	15072186	X_15072186_SNP [dm3] X_15178153_SNP [dm6]	C	T	1.477e^-4	0.708	START_GAINED CG43737 UTR_5_PRIME CG43737	TF binding site mE1_TFBS_chinmo
X	21832019	X_21832019_SNP [dm3] X_22430184_SNP [dm6]	A	G	1.480e^-4	0.708	INTERGENIC	transposable element FlyBase
2R	14458123	2R_14458123_SNP [dm3] 2R_18570618_SNP [dm6]	A	G	1.480e^-4	0.708	INTRON GEFmeso
2L	14215816	2L_14215816_SNP [dm3] 2L_14215816_SNP [dm6]	G	A	1.488e^-4	0.708	INTRON Dyrk2	TF binding site mE1_TFBS_inv
2R	9310139	2R_9310139_SNP [dm3] 2R_13422634_SNP [dm6]	G	A	1.488e^-4	0.708	SYNONYMOUS_CODING CG42321 DOWNSTREAM CG30060
X	7717701	X_7717701_SNP [dm3] X_7823668_SNP [dm6]	G	A	1.490e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	18900004	2L_18900004_SNP [dm3] 2L_18900004_SNP [dm6]	T	A	1.491e^-4	0.708	EXON CR44739	TF binding site mE1_TFBS_cnc
2L	6412067	2L_6412067_SNP [dm3] 2L_6412067_SNP [dm6]	A	G	1.494e^-4	0.708	UPSTREAM CG13982 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	21837442	X_21837442_SNP [dm3] X_22435607_SNP [dm6]	G	A	1.520e^-4	0.708	INTERGENIC	transposable element FlyBase
3R	4250091	3R_4250091_INS [dm3] 3R_8424369_INS [dm6]	T	TT	1.521e^-4	0.708	INTRON CG45263
X	21837539	X_21837539_SNP [dm3] X_22435704_SNP [dm6]	C	A	1.524e^-4	0.708	INTERGENIC
2R	8849850	2R_8849850_INS [dm3] 2R_12962345_INS [dm6]	G	GCG	1.533e^-4	0.708	INTERGENIC	TF binding site mE1_TFBS_HSA
X	14762003	X_14762003_SNP [dm3] X_14867970_SNP [dm6]	T	C	1.540e^-4	0.708	INTRON Flo2 & 1 other
3L	6324823	3L_6324823_SNP [dm3] 3L_6331723_SNP [dm6]	G	A	1.543e^-4	0.708	INTRON CG13300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5228684	X_5228684_SNP [dm3] X_5334651_SNP [dm6]	C	T	1.552e^-4	0.708	DOWNSTREAM CanB INTERGENIC
X	5363298	X_5363298_DEL [dm3] X_5469265_DEL [dm6]	AT	A	1.557e^-4	0.708	INTRON SPR
3L	6325077	3L_6325077_SNP [dm3] 3L_6331977_SNP [dm6]	C	T	1.562e^-4	0.708	INTRON CG13300	TF binding site mE1_TFBS_chinmo
3L	2413171	3L_2413171_SNP [dm3] 3L_2413171_SNP [dm6]	G	T	1.570e^-4	0.708	UPSTREAM CG45186 INTRON CG45186
2L	2653107	2L_2653107_SNP [dm3] 2L_2653107_SNP [dm6]	G	T	1.571e^-4	0.708	UTR_5_PRIME Prosbeta4R1 UPSTREAM CG33125 & 1 other
2L	9923354	2L_9923354_SNP [dm3] 2L_9923354_SNP [dm6]	T	C	1.578e^-4	0.708	DOWNSTREAM CG4592 INTRON TbCMF46	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17570268	2R_17570268_SNP [dm3] 2R_21682763_SNP [dm6]	T	C	1.582e^-4	0.708	INTRON CG30263
2R	17260350	2R_17260350_SNP [dm3] 2R_21372845_SNP [dm6]	A	G	1.586e^-4	0.708	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12409411	3L_12409411_SNP [dm3] 3L_12416311_SNP [dm6]	C	T	1.592e^-4	0.708	SYNONYMOUS_CODING ArfGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13738369	2L_13738369_SNP [dm3] 2L_13738369_SNP [dm6]	C	T	1.593e^-4	0.708	INTERGENIC
2R	3373821	2R_3373821_SNP [dm3] 2R_7486316_SNP [dm6]	A	C	1.597e^-4	0.708	UTR_5_PRIME wech INTRON wech	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10067977	3L_10067977_SNP [dm3] 3L_10074877_SNP [dm6]	A	T	1.601e^-4	0.708	INTRON dpr6
3R	10504551	3R_10504551_SNP [dm3] 3R_14678829_SNP [dm6]	A	G	1.607e^-4	0.708	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	8703882	2L_8703882_DEL [dm3] 2L_8703882_DEL [dm6]	AA	A	1.612e^-4	0.708	INTRON Hnf4 EXON CR44992
2L	13603198	2L_13603198_SNP [dm3] 2L_13603198_SNP [dm6]	G	A	1.614e^-4	0.708	INTRON kuz
3L	18021568	3L_18021568_SNP [dm3] 3L_18028468_SNP [dm6]	G	T	1.617e^-4	0.708	INTRON Eip75B
X	14720521	X_14720521_SNP [dm3] X_14826488_SNP [dm6]	A	T	1.623e^-4	0.708	UPSTREAM rut DOWNSTREAM CG14408 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	18649903	2R_18649903_SNP [dm3] 2R_22762398_SNP [dm6]	C	G	1.625e^-4	0.708	INTRON CG42260	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	1631162	X_1631162_SNP [dm3] X_1737129_SNP [dm6]	T	A	1.644e^-4	0.708	UTR_3_PRIME Scgdelta
3L	12409224	3L_12409224_SNP [dm3] 3L_12416124_SNP [dm6]	T	G	1.646e^-4	0.708	INTRON ArfGAP1	TF binding site mE1_TFBS_chinmo
2L	8213565	2L_8213565_SNP [dm3] 2L_8213565_SNP [dm6]	T	A	1.647e^-4	0.708	UPSTREAM CG8372 & 1 other INTRON CG8360	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	9726588	3L_9726588_SNP [dm3] 3L_9733488_SNP [dm6]	G	A	1.649e^-4	0.708	DOWNSTREAM mir-4986 & 1 other INTRON CG6749
2R	10634726	2R_10634726_SNP [dm3] 2R_14747221_SNP [dm6]	C	A	1.650e^-4	0.708	UPSTREAM AttA DOWNSTREAM Dro INTERGENIC	regulatory region REDfly_CRMs
2L	13820723	2L_13820723_SNP [dm3] 2L_13820723_SNP [dm6]	T	A	1.657e^-4	0.708	UPSTREAM b DOWNSTREAM Sos INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	13820740	2L_13820740_SNP [dm3] 2L_13820740_SNP [dm6]	G	A	1.657e^-4	0.708	UPSTREAM b DOWNSTREAM Sos INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	14059464	2L_14059464_SNP [dm3] 2L_14059464_SNP [dm6]	T	G	1.657e^-4	0.708	INTRON nAChRalpha5
3L	6345159	3L_6345159_SNP [dm3] 3L_6352059_SNP [dm6]	G	C	1.664e^-4	0.708	UTR_5_PRIME CG13300	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	12409268	3L_12409268_SNP [dm3] 3L_12416168_SNP [dm6]	T	C	1.670e^-4	0.708	INTRON ArfGAP1	TF binding site mE1_TFBS_chinmo
2R	19390250	2R_19390250_SNP [dm3] 2R_23502727_SNP [dm6]	C	T	1.689e^-4	0.708	UPSTREAM CG13559 INTERGENIC	TF binding site mE1_TFBS_inv
3L	4387229	3L_4387229_SNP [dm3] 3L_4387229_SNP [dm6]	T	C	1.693e^-4	0.708	INTRON slow
2L	9871556	2L_9871556_SNP [dm3] 2L_9871556_SNP [dm6]	G	T	1.701e^-4	0.708	INTRON nAChRalpha6
X	4237936	X_4237936_SNP [dm3] X_4343903_SNP [dm6]	T	A	1.702e^-4	0.708	INTRON norpA
3L	11505477	3L_11505477_SNP [dm3] 3L_11512377_SNP [dm6]	T	A	1.715e^-4	0.708	NON_SYNONYMOUS_CODING Sgs3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6692907	3L_6692907_SNP [dm3] 3L_6699807_SNP [dm6]	G	A	1.715e^-4	0.708	INTRON SP1173
X	7890716	X_7890716_SNP [dm3] X_7996683_SNP [dm6]	T	C	1.738e^-4	0.708	INTRON Tbh
2L	14087891	2L_14087891_SNP [dm3] 2L_14087891_SNP [dm6]	G	T	1.743e^-4	0.708	INTRON nAChRalpha5
3R	25975834	3R_25975834_SNP [dm3] 3R_30150112_SNP [dm6]	G	A	1.746e^-4	0.708	UPSTREAM AdoR INTERGENIC
X	8789011	X_8789011_INS [dm3] X_8894978_INS [dm6]	A	AA	1.771e^-4	0.708	UPSTREAM Moe INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2L	2407608	2L_2407608_SNP [dm3] 2L_2407608_SNP [dm6]	G	A	1.774e^-4	0.708	SYNONYMOUS_CODING VGlut
2R	18152141	2R_18152141_SNP [dm3] 2R_22264636_SNP [dm6]	G	T	1.776e^-4	0.708	INTRON dve
3L	19318930	3L_19318930_SNP [dm3] 3L_19325830_SNP [dm6]	T	C	1.783e^-4	0.708	INTRON pip
X	17062994	X_17062994_SNP [dm3] X_17168961_SNP [dm6]	C	A	1.783e^-4	0.708	INTRON baz
2L	8573727	2L_8573727_SNP [dm3] 2L_8573727_SNP [dm6]	G	A	1.786e^-4	0.708	INTRON Sema-1a
2L	11379132	2L_11379132_SNP [dm3] 2L_11379132_SNP [dm6]	G	A	1.786e^-4	0.708	INTERGENIC	regulatory region REDfly_CRMs
3L	9322039	3L_9322039_SNP [dm3] 3L_9328939_SNP [dm6]	T	G	1.789e^-4	0.708	INTERGENIC
2R	17689359	2R_17689359_SNP [dm3] 2R_21801854_SNP [dm6]	A	C	1.791e^-4	0.708	UPSTREAM CG4386 INTERGENIC
X	21099472	X_21099472_SNP [dm3] X_21228445_SNP [dm6]	G	T	1.793e^-4	0.708	INTRON CG32521
2L	8558377	2L_8558377_SNP [dm3] 2L_8558377_SNP [dm6]	G	A	1.799e^-4	0.708	INTRON Sema-1a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9578836	2L_9578836_SNP [dm3] 2L_9578836_SNP [dm6]	T	C	1.807e^-4	0.708	NON_SYNONYMOUS_CODING CG31709 DOWNSTREAM gcm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18278439	2R_18278439_SNP [dm3] 2R_22390934_SNP [dm6]	C	T	1.811e^-4	0.708	INTRON CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	16665687	3L_16665687_SNP [dm3] 3L_16672587_SNP [dm6]	T	C	1.819e^-4	0.708	INTRON zetaCOP
3L	17784872	3L_17784872_SNP [dm3] 3L_17791772_SNP [dm6]	C	T	1.820e^-4	0.708	UPSTREAM CG42815 DOWNSTREAM CG42816 INTERGENIC
3R	4098160	3R_4098160_SNP [dm3] 3R_8272438_SNP [dm6]	C	A	1.822e^-4	0.708	INTERGENIC	regulatory region REDfly_CRMs
3L	17796383	3L_17796383_SNP [dm3] 3L_17803283_SNP [dm6]	A	G	1.826e^-4	0.708	SYNONYMOUS_CODING CG5589	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	10295051	2L_10295051_SNP [dm3] 2L_10295051_SNP [dm6]	T	C	1.828e^-4	0.708	NON_SYNONYMOUS_CODING Hand DOWNSTREAM CYLD	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15404856	X_15404856_SNP [dm3] X_15510823_SNP [dm6]	G	A	1.830e^-4	0.708	UTR_3_PRIME Gmap DOWNSTREAM Ac13E & 1 other
2R	11118690	2R_11118690_INS [dm3] 2R_15231185_INS [dm6]	A	AGCCAAAATTTAAGTGCATG...	1.839e^-4	0.708	INTRON Fs EXON CR44370
X	12722306	X_12722306_SNP [dm3] X_12828273_SNP [dm6]	G	A	1.840e^-4	0.708	INTRON Pde9
3R	10166417	3R_10166417_SNP [dm3] 3R_14340695_SNP [dm6]	G	A	1.842e^-4	0.708	INTRON NK7.1
3L	1237448	3L_1237448_SNP [dm3] 3L_1237448_SNP [dm6]	C	G	1.844e^-4	0.708	NON_SYNONYMOUS_CODING CG9192 INTRON CG9194
X	21848169	X_21848169_SNP [dm3] X_22446333_SNP [dm6]	G	T	1.847e^-4	0.708	DOWNSTREAM CG14615 INTRON CG14621	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25546306	3R_25546306_SNP [dm3] 3R_29720584_SNP [dm6]	A	G	1.847e^-4	0.708	INTRON CG15506
2R	16720867	2R_16720867_SNP [dm3] 2R_20833362_SNP [dm6]	T	C	1.851e^-4	0.708	UPSTREAM sktl INTRON insc & 1 other	TF binding site BDTNP1_TFBS_dl
3L	14498429	3L_14498429_SNP [dm3] 3L_14505329_SNP [dm6]	T	A	1.866e^-4	0.708	INTRON bbg
2R	18050570	2R_18050570_SNP [dm3] 2R_22163065_SNP [dm6]	A	C	1.869e^-4	0.708	NON_SYNONYMOUS_CODING a DOWNSTREAM CG34206	TF binding site mE1_TFBS_cad
3L	17788650	3L_17788650_SNP [dm3] 3L_17795550_SNP [dm6]	A	G	1.872e^-4	0.708	INTRON CG42816
2L	15261541	2L_15261541_SNP [dm3] 2L_15261541_SNP [dm6]	G	T	1.885e^-4	0.708	NON_SYNONYMOUS_CODING yuri INTRON yuri
3L	14971369	3L_14971369_INS [dm3] 3L_14978269_INS [dm6]	T	TT	1.889e^-4	0.708	UPSTREAM CR43432 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8080797	2L_8080797_SNP [dm3] 2L_8080797_SNP [dm6]	A	T	1.890e^-4	0.708	INTRON Mcr	TF binding site BDTNP1_TFBS_dl
2L	4609612	2L_4609612_SNP [dm3] 2L_4609612_SNP [dm6]	A	C	1.908e^-4	0.708	INTRON dp
3R	5087277	3R_5087277_SNP [dm3] 3R_9261555_SNP [dm6]	T	A	1.910e^-4	0.708	INTRON VhaM8.9	TF binding site mE1_TFBS_HSA
2L	9579282	2L_9579282_SNP [dm3] 2L_9579282_SNP [dm6]	T	G	1.911e^-4	0.708	NON_SYNONYMOUS_CODING CG31709 DOWNSTREAM gcm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17063023	X_17063023_SNP [dm3] X_17168990_SNP [dm6]	T	G	1.919e^-4	0.708	INTRON baz
3L	3790963	3L_3790963_SNP [dm3] 3L_3790963_SNP [dm6]	G	C	1.924e^-4	0.708	INTRON CG32264 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18219289	2L_18219289_DEL [dm3] 2L_18219289_DEL [dm6]	ACA	A	1.927e^-4	0.708	INTRON CG42750
2R	10897658	2R_10897658_SNP [dm3] 2R_15010153_SNP [dm6]	C	T	1.927e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn mE1_TFBS_Trl
3R	4416302	3R_4416302_SNP [dm3] 3R_8590580_SNP [dm6]	G	C	1.931e^-4	0.708	INTRON 5-HT2B
2R	8658256	2R_8658256_SNP [dm3] 2R_12770751_SNP [dm6]	C	T	1.932e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	8013882	X_8013882_SNP [dm3] X_8119849_SNP [dm6]	G	A	1.938e^-4	0.708	SYNONYMOUS_CODING CG2260 DOWNSTREAM CG1575	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9951369	2L_9951369_SNP [dm3] 2L_9951369_SNP [dm6]	C	G	1.939e^-4	0.708	UPSTREAM mir-87 DOWNSTREAM CG13126 INTERGENIC
2R	15044400	2R_15044400_SNP [dm3] 2R_19156895_SNP [dm6]	T	C	1.945e^-4	0.708	INTRON ena
3L	13513697	3L_13513697_SNP [dm3] 3L_13520597_SNP [dm6]	T	G	1.946e^-4	0.708	UPSTREAM CG10710 INTERGENIC
2R	19195172	2R_19195172_SNP [dm3] 2R_23307649_SNP [dm6]	C	A	1.948e^-4	0.708	INTERGENIC
2R	17899083	2R_17899083_SNP [dm3] 2R_22011578_SNP [dm6]	T	A	1.949e^-4	0.708	INTRON CG34370
3L	4650838	3L_4650838_SNP [dm3] 3L_4650838_SNP [dm6]	A	T	1.955e^-4	0.708	DOWNSTREAM CG32238 INTRON axo
2L	14279574	2L_14279574_SNP [dm3] 2L_14279574_SNP [dm6]	G	T	1.956e^-4	0.708	INTRON wb
2L	2406896	2L_2406896_SNP [dm3] 2L_2406896_SNP [dm6]	A	T	1.956e^-4	0.708	INTRON VGlut
X	21846243	X_21846243_SNP [dm3] X_22444407_SNP [dm6]	G	A	1.958e^-4	0.708	UTR_5_PRIME CG14621 UPSTREAM CG14621	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	9026227	3L_9026227_SNP [dm3] 3L_9033127_SNP [dm6]	C	A	1.961e^-4	0.708	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	13665608	2R_13665608_SNP [dm3] 2R_17778103_SNP [dm6]	C	T	1.964e^-4	0.708	SYNONYMOUS_CODING fab1 UTR_3_PRIME CG33981	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13802727	2L_13802727_SNP [dm3] 2L_13802727_SNP [dm6]	A	G	1.965e^-4	0.708	UPSTREAM CAH1 INTERGENIC
3L	14105304	3L_14105304_SNP [dm3] 3L_14112204_SNP [dm6]	C	T	1.968e^-4	0.708	DOWNSTREAM Sox21b INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	16752904	3R_16752904_SNP [dm3] 3R_20927182_SNP [dm6]	G	A	1.977e^-4	0.708	SPLICE_SITE_REGION hdly INTRON CG31191 & 1 other
2L	16801695	2L_16801695_SNP [dm3] 2L_16801695_SNP [dm6]	C	A	1.980e^-4	0.708	DOWNSTREAM CG13280 & 1 other INTERGENIC
2L	10429836	2L_10429836_SNP [dm3] 2L_10429836_SNP [dm6]	C	T	1.981e^-4	0.708	SYNONYMOUS_CODING CG5188 DOWNSTREAM CG5343	TF binding site mE1_TFBS_sens
2R	15418493	2R_15418493_SNP [dm3] 2R_19530988_SNP [dm6]	C	A	1.994e^-4	0.708	INTRON sm	TF binding site mE1_TFBS_sens
2L	9912292	2L_9912292_SNP [dm3] 2L_9912292_SNP [dm6]	T	A	1.997e^-4	0.708	SPLICE_SITE_REGION Etl1 UPSTREAM Srp54 INTRON Etl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	9044647	X_9044647_SNP [dm3] X_9150614_SNP [dm6]	A	G	2.003e^-4	0.708	NON_SYNONYMOUS_CODING dalao	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10082315	3L_10082315_INS [dm3] 3L_10089215_INS [dm6]	T	TT	2.004e^-4	0.708	UTR_5_PRIME CG14160 DOWNSTREAM CG32053 INTRON dpr6
X	9678388	X_9678388_SNP [dm3] X_9784355_SNP [dm6]	G	A	2.011e^-4	0.708	INTRON CG32698	TF binding site mE1_TFBS_inv
3L	7103256	3L_7103256_SNP [dm3] 3L_7110156_SNP [dm6]	G	C	2.015e^-4	0.708	INTRON form3
3L	12076864	3L_12076864_INS [dm3] 3L_12083764_INS [dm6]	C	CGGC	2.018e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3603245	X_3603245_SNP [dm3] X_3709212_SNP [dm6]	A	C	2.019e^-4	0.708	INTRON Rala
3R	4354841	3R_4354841_SNP [dm3] 3R_8529119_SNP [dm6]	C	G	2.020e^-4	0.708	UPSTREAM CG11741 INTERGENIC	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
X	15072155	X_15072155_INS [dm3] X_15178122_INS [dm6]	A	ATGATGATGA	2.024e^-4	0.708	UTR_5_PRIME CG43737	TF binding site mE1_TFBS_chinmo
3R	7354681	3R_7354681_SNP [dm3] 3R_11528959_SNP [dm6]	G	A	2.033e^-4	0.708	INTERGENIC
3L	4929448	3L_4929448_SNP [dm3] 3L_4929448_SNP [dm6]	T	G	2.035e^-4	0.708	DOWNSTREAM CR43627 EXON CR43627
2R	12132478	2R_12132478_SNP [dm3] 2R_16244973_SNP [dm6]	A	G	2.038e^-4	0.708	SYNONYMOUS_CODING CngA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2531486	3L_2531486_SNP [dm3] 3L_2531486_SNP [dm6]	T	G	2.043e^-4	0.708	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	1559287	3L_1559287_SNP [dm3] 3L_1559287_SNP [dm6]	G	A	2.059e^-4	0.708	SYNONYMOUS_CODING Pex10 UPSTREAM CG12099 DOWNSTREAM CG7879	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3776390	3L_3776390_SNP [dm3] 3L_3776390_SNP [dm6]	T	G	2.061e^-4	0.708	INTRON CG32264	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	21844860	X_21844860_INS [dm3] X_22443024_INS [dm6]	A	ATAATTTTT	2.066e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	7357015	3R_7357015_SNP [dm3] 3R_11531293_SNP [dm6]	A	G	2.066e^-4	0.708	INTERGENIC
2L	16316311	2L_16316311_SNP [dm3] 2L_16316311_SNP [dm6]	G	A	2.070e^-4	0.708	INTRON cact	TF binding site BDTNP1_TFBS_twi
3R	8410184	3R_8410184_SNP [dm3] 3R_12584462_SNP [dm6]	C	G	2.075e^-4	0.708	INTRON Octbeta2R
2R	15052216	2R_15052216_SNP [dm3] 2R_19164711_SNP [dm6]	T	C	2.075e^-4	0.708	INTRON CG10737	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	19665740	X_19665740_SNP [dm3] X_19771707_SNP [dm6]	A	C	2.078e^-4	0.708	INTRON vfl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11903488	X_11903488_SNP [dm3] X_12009455_SNP [dm6]	C	T	2.082e^-4	0.708	NON_SYNONYMOUS_CODING CG1806 DOWNSTREAM CG1492
3L	2904178	3L_2904178_INS [dm3] 3L_2904178_INS [dm6]	T	TGTT	2.088e^-4	0.708	INTRON Shab
2L	1365573	2L_1365573_SNP [dm3] 2L_1365573_SNP [dm6]	A	C	2.092e^-4	0.708	INTERGENIC
3L	7544566	3L_7544566_INS [dm3] 3L_7551466_INS [dm6]	A	AA	2.093e^-4	0.708	INTERGENIC
2R	16686851	2R_16686851_SNP [dm3] 2R_20799346_SNP [dm6]	G	C	2.097e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25855902	3R_25855902_SNP [dm3] 3R_30030180_SNP [dm6]	G	A	2.104e^-4	0.708	INTRON Axn	TF binding site BDTNP1_TFBS_dl
3R	11391128	3R_11391128_SNP [dm3] 3R_15565406_SNP [dm6]	A	T	2.106e^-4	0.708	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	12414276	3L_12414276_SNP [dm3] 3L_12421176_SNP [dm6]	G	A	2.106e^-4	0.708	INTERGENIC
2L	2243824	2L_2243824_SNP [dm3] 2L_2243824_SNP [dm6]	A	C	2.108e^-4	0.708	SYNONYMOUS_CODING CG4267
2R	7340166	2R_7340166_SNP [dm3] 2R_11452661_SNP [dm6]	G	A	2.113e^-4	0.708	UPSTREAM E_Pc_ INTRON E_Pc_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3L	1237411	3L_1237411_SNP [dm3] 3L_1237411_SNP [dm6]	T	C	2.120e^-4	0.708	SYNONYMOUS_CODING CG9192 INTRON CG9194
X	8789086	X_8789086_SNP [dm3] X_8895053_SNP [dm6]	A	G	2.132e^-4	0.708	UPSTREAM Moe INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5557408	X_5557408_INS [dm3] X_5663375_INS [dm6]	T	TGTAT	2.136e^-4	0.708	UPSTREAM CG42265 EXON CR45520	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	3452138	2L_3452138_SNP [dm3] 2L_3452138_SNP [dm6]	G	A	2.136e^-4	0.708	UPSTREAM CG12795 DOWNSTREAM Snx1 INTERGENIC
2R	16246186	2R_16246186_SNP [dm3] 2R_20358681_SNP [dm6]	G	A	2.137e^-4	0.708	INTERGENIC
2L	13862868	2L_13862868_SNP [dm3] 2L_13862868_SNP [dm6]	T	A	2.141e^-4	0.708	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	18049996	2R_18049996_SNP [dm3] 2R_22162491_SNP [dm6]	T	G	2.144e^-4	0.708	INTRON a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9916765	2L_9916765_SNP [dm3] 2L_9916765_SNP [dm6]	C	T	2.156e^-4	0.708	SYNONYMOUS_CODING yip2 DOWNSTREAM CG5885	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17796368	3L_17796368_SNP [dm3] 3L_17803268_SNP [dm6]	A	G	2.157e^-4	0.708	SYNONYMOUS_CODING CG5589 UPSTREAM NUCB1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	4652260	3L_4652260_INS [dm3] 3L_4652260_INS [dm6]	T	TCT	2.158e^-4	0.708	INTRON axo
3L	6325913	3L_6325913_SNP [dm3] 3L_6332813_SNP [dm6]	G	A	2.169e^-4	0.708	SYNONYMOUS_CODING CG13300	TF binding site mE1_TFBS_chinmo
3L	11930622	3L_11930622_SNP [dm3] 3L_11937522_SNP [dm6]	G	A	2.170e^-4	0.708	SYNONYMOUS_CODING CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15144651	X_15144651_SNP [dm3] X_15250618_SNP [dm6]	C	A	2.170e^-4	0.708	INTERGENIC
3L	6055459	3L_6055459_SNP [dm3] 3L_6062359_SNP [dm6]	G	T	2.172e^-4	0.708	SYNONYMOUS_CODING CG10472 DOWNSTREAM CG6592	TF binding site mE1_TFBS_cad
3L	14140892	3L_14140892_SNP [dm3] 3L_14147792_SNP [dm6]	C	A	2.174e^-4	0.708	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	9923348	2L_9923348_SNP [dm3] 2L_9923348_SNP [dm6]	G	C	2.180e^-4	0.708	DOWNSTREAM CG4592 INTRON TbCMF46	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21845912	X_21845912_SNP [dm3] X_22444076_SNP [dm6]	T	C	2.181e^-4	0.708	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	16062975	2L_16062975_SNP [dm3] 2L_16062975_SNP [dm6]	G	A	2.184e^-4	0.708	INTRON beat-Ia
2L	2407514	2L_2407514_SNP [dm3] 2L_2407514_SNP [dm6]	C	A	2.185e^-4	0.708	NON_SYNONYMOUS_CODING VGlut
3R	5399098	3R_5399098_SNP [dm3] 3R_9573376_SNP [dm6]	C	A	2.189e^-4	0.708	SYNONYMOUS_CODING CG9399	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	17786076	3L_17786076_SNP [dm3] 3L_17792976_SNP [dm6]	G	A	2.206e^-4	0.708	SYNONYMOUS_CODING CG42816
2L	2406901	2L_2406901_SNP [dm3] 2L_2406901_SNP [dm6]	T	C	2.216e^-4	0.708	INTRON VGlut
2L	2714490	2L_2714490_SNP [dm3] 2L_2714490_SNP [dm6]	C	G	2.223e^-4	0.708	INTRON CG31690
2R	13707496	2R_13707496_SNP [dm3] 2R_17819991_SNP [dm6]	T	G	2.224e^-4	0.708	INTRON grh	transposable element FlyBase
3L	6432738	3L_6432738_SNP [dm3] 3L_6439638_SNP [dm6]	A	C	2.228e^-4	0.708	INTRON CG42747
3L	11527986	3L_11527986_SNP [dm3] 3L_11534886_SNP [dm6]	C	T	2.240e^-4	0.708	UPSTREAM Mob2 INTRON Mob2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	3030180	X_3030180_SNP [dm3] X_3136147_SNP [dm6]	G	T	2.243e^-4	0.708	INTRON N	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	9814835	2R_9814835_SNP [dm3] 2R_13927330_SNP [dm6]	A	T	2.248e^-4	0.708	INTRON shot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	19665709	X_19665709_DEL [dm3] X_19771676_DEL [dm6]	AATCAATAAAA...	A	2.256e^-4	0.708	INTRON vfl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	19390586	2R_19390586_SNP [dm3] 2R_23503063_SNP [dm6]	T	C	2.257e^-4	0.708	UTR_5_PRIME CG13559	TF binding site mE1_TFBS_inv
2R	18055620	2R_18055620_SNP [dm3] 2R_22168115_SNP [dm6]	C	G	2.259e^-4	0.708	INTRON a
3L	2510648	3L_2510648_SNP [dm3] 3L_2510648_SNP [dm6]	T	A	2.266e^-4	0.708	INTRON Spn
3L	2532521	3L_2532521_INS [dm3] 3L_2532521_INS [dm6]	C	AATATAAAAATAAT...	2.267e^-4	0.708	INTRON Spn
3L	2532730	3L_2532730_SNP [dm3] 3L_2532730_SNP [dm6]	G	A	2.267e^-4	0.708	INTRON Spn
3L	2532903	3L_2532903_SNP [dm3] 3L_2532903_SNP [dm6]	C	G	2.267e^-4	0.708	INTRON Spn
2L	8080833	2L_8080833_SNP [dm3] 2L_8080833_SNP [dm6]	G	T	2.277e^-4	0.708	INTRON Mcr	TF binding site BDTNP1_TFBS_dl
3L	4405364	3L_4405364_SNP [dm3] 3L_4405364_SNP [dm6]	T	A	2.281e^-4	0.708	SYNONYMOUS_CODING CG15019 DOWNSTREAM Syx17	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	9388700	2L_9388700_SNP [dm3] 2L_9388700_SNP [dm6]	G	A	2.281e^-4	0.708	INTRON Shawl & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17218627	2L_17218627_SNP [dm3] 2L_17218627_SNP [dm6]	A	T	2.289e^-4	0.708	INTRON beat-IIIc
3L	17784873	3L_17784873_SNP [dm3] 3L_17791773_SNP [dm6]	C	T	2.293e^-4	0.708	UPSTREAM CG42815 DOWNSTREAM CG42816 INTERGENIC
3R	23777517	3R_23777517_SNP [dm3] 3R_27951795_SNP [dm6]	G	A	2.298e^-4	0.708	SYNONYMOUS_CODING Gp93 DOWNSTREAM CG4951	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	3602321	X_3602321_SNP [dm3] X_3708288_SNP [dm6]	G	T	2.300e^-4	0.708	INTRON Rala
2R	15686404	2R_15686404_SNP [dm3] 2R_19798899_SNP [dm6]	C	T	2.311e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16509234	3L_16509234_DEL [dm3] 3L_16516134_DEL [dm6]	GGACTTAAAG	G	2.320e^-4	0.708	INTRON CG43373
2L	5620342	2L_5620342_SNP [dm3] 2L_5620342_SNP [dm6]	G	A	2.329e^-4	0.708	UPSTREAM CR44796 DOWNSTREAM Cyp6a16 INTERGENIC
2R	18889414	2R_18889414_SNP [dm3] 2R_23001891_SNP [dm6]	T	C	2.334e^-4	0.708	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	11478154	2R_11478154_DEL [dm3] 2R_15590649_DEL [dm6]	GGAA	G	2.338e^-4	0.708	INTERGENIC
2L	2406902	2L_2406902_SNP [dm3] 2L_2406902_SNP [dm6]	T	A	2.340e^-4	0.708	INTRON VGlut
2R	16086203	2R_16086203_SNP [dm3] 2R_20198698_SNP [dm6]	G	A	2.353e^-4	0.708	INTERGENIC
2L	5777811	2L_5777811_SNP [dm3] 2L_5777811_SNP [dm6]	G	C	2.358e^-4	0.708	INTRON CG9171	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	9511250	3L_9511250_SNP [dm3] 3L_9518150_SNP [dm6]	C	G	2.363e^-4	0.708	INTRON CG33700
X	8708093	X_8708093_SNP [dm3] X_8814060_SNP [dm6]	T	A	2.365e^-4	0.708	INTERGENIC
3L	2290235	3L_2290235_SNP [dm3] 3L_2290235_SNP [dm6]	G	A	2.366e^-4	0.708	INTRON MsR2
3R	7551760	3R_7551760_SNP [dm3] 3R_11726038_SNP [dm6]	A	C	2.367e^-4	0.708	INTRON CG12594
3L	13226364	3L_13226364_SNP [dm3] 3L_13233264_SNP [dm6]	T	A	2.367e^-4	0.708	INTRON caps
X	16582648	X_16582648_SNP [dm3] X_16688615_SNP [dm6]	G	C	2.369e^-4	0.708	INTRON Sep4	TF binding site BDTNP1_TFBS_dl
2R	8728718	2R_8728718_SNP [dm3] 2R_12841213_SNP [dm6]	G	T	2.372e^-4	0.708	NON_SYNONYMOUS_CODING Cyp9h1
2R	10837208	2R_10837208_SNP [dm3] 2R_14949703_SNP [dm6]	C	T	2.377e^-4	0.708	SYNONYMOUS_CODING aPKC UTR_5_PRIME aPKC INTRON aPKC	TF binding site mE1_TFBS_Trl
3L	2413202	3L_2413202_INS [dm3] 3L_2413202_INS [dm6]	A	AA	2.381e^-4	0.708	UPSTREAM CG45186 INTRON CG45186
3L	17132500	3L_17132500_INS [dm3] 3L_17139400_INS [dm6]	G	CC	2.384e^-4	0.708	INTRON Rbp6
3L	5598025	3L_5598025_SNP [dm3] 3L_5604925_SNP [dm6]	C	G	2.387e^-4	0.708	NON_SYNONYMOUS_CODING mthl2 UPSTREAM CG10590
X	18489131	X_18489131_SNP [dm3] X_18595098_SNP [dm6]	C	T	2.395e^-4	0.708	INTERGENIC
2L	9914502	2L_9914502_SNP [dm3] 2L_9914502_SNP [dm6]	G	A	2.403e^-4	0.708	SYNONYMOUS_CODING Srp54 UPSTREAM yip2
2L	12586581	2L_12586581_SNP [dm3] 2L_12586581_SNP [dm6]	T	C	2.405e^-4	0.708	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	9651062	2L_9651062_SNP [dm3] 2L_9651062_SNP [dm6]	T	C	2.406e^-4	0.708	SYNONYMOUS_CODING Apoltp
3L	15125510	3L_15125510_SNP [dm3] 3L_15132410_SNP [dm6]	C	T	2.411e^-4	0.708	NON_SYNONYMOUS_CODING CG12316	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5564183	X_5564183_SNP [dm3] X_5670150_SNP [dm6]	G	C	2.417e^-4	0.708	UTR_3_PRIME CG4119 DOWNSTREAM Rab18	TF binding site BDTNP1_TFBS_dl
3R	14103834	3R_14103834_SNP [dm3] 3R_18278112_SNP [dm6]	T	G	2.436e^-4	0.708	DOWNSTREAM CG7142 INTRON eIF-1A
3L	5980928	3L_5980928_SNP [dm3] 3L_5987828_SNP [dm6]	T	C	2.438e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	11684680	3L_11684680_SNP [dm3] 3L_11691580_SNP [dm6]	C	T	2.439e^-4	0.708	UTR_5_PRIME CG14135 UPSTREAM CG14135 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	14348731	2R_14348731_SNP [dm3] 2R_18461226_SNP [dm6]	G	A	2.439e^-4	0.708	SPLICE_SITE_REGION CG30116 SYNONYMOUS_CODING CG30116	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20661715	3R_20661715_SNP [dm3] 3R_24835993_SNP [dm6]	T	A	2.442e^-4	0.708	UPSTREAM sosie INTRON sosie EXON CR45216	TF binding site BDTNP1_TFBS_dl
2L	4629844	2L_4629844_SNP [dm3] 2L_4629844_SNP [dm6]	T	C	2.445e^-4	0.708	INTERGENIC
3L	11935812	3L_11935812_SNP [dm3] 3L_11942712_SNP [dm6]	T	C	2.451e^-4	0.708	SYNONYMOUS_CODING Rpt4R DOWNSTREAM CG5883
2R	17143430	2R_17143430_SNP [dm3] 2R_21255925_SNP [dm6]	A	T	2.455e^-4	0.708	UTR_5_PRIME Rgk3
2L	7501310	2L_7501310_SNP [dm3] 2L_7501310_SNP [dm6]	G	A	2.464e^-4	0.708	SYNONYMOUS_CODING RapGAP1	TF binding site mE1_TFBS_cad
2L	9911655	2L_9911655_SNP [dm3] 2L_9911655_SNP [dm6]	T	C	2.465e^-4	0.708	SYNONYMOUS_CODING Etl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	12409735	3L_12409735_SNP [dm3] 3L_12416635_SNP [dm6]	C	T	2.468e^-4	0.708	SYNONYMOUS_CODING ArfGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9388693	2L_9388693_SNP [dm3] 2L_9388693_SNP [dm6]	C	A	2.470e^-4	0.708	INTRON Shawl & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3912196	X_3912196_SNP [dm3] X_4018163_SNP [dm6]	A	G	2.471e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_Med
2L	4168695	2L_4168695_SNP [dm3] 2L_4168695_SNP [dm6]	T	A	2.475e^-4	0.708	INTERGENIC
X	21843280	X_21843280_SNP [dm3] X_22441444_SNP [dm6]	A	T	2.490e^-4	0.708	INTERGENIC	transposable element FlyBase
3L	6277072	3L_6277072_SNP [dm3] 3L_6283972_SNP [dm6]	C	A	2.491e^-4	0.708	INTERGENIC
2L	11407581	2L_11407581_SNP [dm3] 2L_11407581_SNP [dm6]	C	T	2.522e^-4	0.708	INTERGENIC	regulatory region REDfly_CRMs
3L	2683677	3L_2683677_SNP [dm3] 3L_2683677_SNP [dm6]	G	C	2.525e^-4	0.708	INTRON Fife
X	9043962	X_9043962_SNP [dm3] X_9149929_SNP [dm6]	G	A	2.527e^-4	0.708	SYNONYMOUS_CODING dalao UPSTREAM fh	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11186123	3L_11186123_SNP [dm3] 3L_11193023_SNP [dm6]	C	T	2.534e^-4	0.708	INTRON GlcAT-P
3L	14511044	3L_14511044_SNP [dm3] 3L_14517944_SNP [dm6]	A	T	2.535e^-4	0.708	UTR_5_PRIME CG9592 INTRON bbg
3L	17752561	3L_17752561_SNP [dm3] 3L_17759461_SNP [dm6]	C	T	2.537e^-4	0.708	UTR_3_PRIME CG32182 UPSTREAM CG32181 INTRON Adgf-A & 1 other
X	9452398	X_9452398_INS [dm3] X_9558365_INS [dm6]	A	TTC	2.538e^-4	0.708	DOWNSTREAM Cubn EXON CR42767
3L	2380090	3L_2380090_DEL [dm3] 3L_2380090_DEL [dm6]	ATGGATTT	C	2.538e^-4	0.708	INTRON CG45186
3R	20072935	3R_20072935_SNP [dm3] 3R_24247213_SNP [dm6]	A	T	2.540e^-4	0.708	SYNONYMOUS_CODING mask	TF binding site mE1_TFBS_chinmo
X	14374030	X_14374030_SNP [dm3] X_14479997_SNP [dm6]	C	T	2.550e^-4	0.708	UTR_5_PRIME CG9411
3R	13908836	3R_13908836_SNP [dm3] 3R_18083114_SNP [dm6]	A	G	2.551e^-4	0.708	DOWNSTREAM CG14317 INTERGENIC
2L	9284459	2L_9284459_SNP [dm3] 2L_9284459_SNP [dm6]	A	G	2.553e^-4	0.708	INTRON Ggamma30A
X	18489349	X_18489349_SNP [dm3] X_18595316_SNP [dm6]	A	T	2.558e^-4	0.708	INTERGENIC
3R	20571521	3R_20571521_SNP [dm3] 3R_24745799_SNP [dm6]	A	G	2.560e^-4	0.708	SYNONYMOUS_CODING tok	TF binding site mE1_TFBS_chinmo
2R	15039183	2R_15039183_SNP [dm3] 2R_19151678_SNP [dm6]	G	A	2.567e^-4	0.708	INTRON ena	TF binding site mE1_TFBS_HSA
2R	14278486	2R_14278486_SNP [dm3] 2R_18390981_SNP [dm6]	C	G	2.570e^-4	0.708	UPSTREAM CG15068 DOWNSTREAM CG15065 INTERGENIC
3R	23208558	3R_23208558_DEL [dm3] 3R_27382836_DEL [dm6]	CCGCTGC	C	2.571e^-4	0.708	INTRON side	TF binding site mE1_TFBS_chinmo
3L	3547752	3L_3547752_INS [dm3] 3L_3547752_INS [dm6]	A	AAA	2.577e^-4	0.708	INTRON Eip63E
3R	7551793	3R_7551793_SNP [dm3] 3R_11726071_SNP [dm6]	A	T	2.581e^-4	0.708	INTRON CG12594
2L	9871552	2L_9871552_SNP [dm3] 2L_9871552_SNP [dm6]	A	T	2.587e^-4	0.708	INTRON nAChRalpha6
X	21848127	X_21848127_SNP [dm3] X_22446291_SNP [dm6]	T	C	2.598e^-4	0.708	DOWNSTREAM CG14615 INTRON CG14621	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4747649	3L_4747649_SNP [dm3] 3L_4747649_SNP [dm6]	C	A	2.599e^-4	0.708	INTRON RhoGEF64C
2L	8080761	2L_8080761_SNP [dm3] 2L_8080761_SNP [dm6]	T	A	2.606e^-4	0.708	INTRON Mcr	TF binding site BDTNP1_TFBS_dl
X	5564214	X_5564214_SNP [dm3] X_5670181_SNP [dm6]	A	G	2.608e^-4	0.708	UTR_3_PRIME CG4119 DOWNSTREAM Rab18
2R	18152832	2R_18152832_SNP [dm3] 2R_22265327_SNP [dm6]	C	A	2.611e^-4	0.708	INTRON dve	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	13972629	2R_13972629_SNP [dm3] 2R_18085124_SNP [dm6]	A	T	2.613e^-4	0.708	INTRON CG34386
X	20728758	X_20728758_SNP [dm3] X_20857731_SNP [dm6]	T	C	2.615e^-4	0.708	INTRON shakB
X	1641330	X_1641330_SNP [dm3] X_1747297_SNP [dm6]	G	C	2.616e^-4	0.708	INTRON Scgdelta	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
3L	21161251	3L_21161251_SNP [dm3] 3L_21168151_SNP [dm6]	T	A	2.621e^-4	0.708	INTRON Ac78C
3L	7544476	3L_7544476_SNP [dm3] 3L_7551376_SNP [dm6]	A	T	2.623e^-4	0.708	INTERGENIC
3L	2531631	3L_2531631_SNP [dm3] 3L_2531631_SNP [dm6]	A	C	2.624e^-4	0.708	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	2533847	3L_2533847_SNP [dm3] 3L_2533847_SNP [dm6]	C	T	2.624e^-4	0.708	INTRON Spn
2R	12474198	2R_12474198_SNP [dm3] 2R_16586693_SNP [dm6]	A	T	2.628e^-4	0.708	UTR_3_PRIME RpLP2 DOWNSTREAM CG8311	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8095812	3L_8095812_SNP [dm3] 3L_8102712_SNP [dm6]	C	T	2.643e^-4	0.708	INTRON Ect4
2R	12819382	2R_12819382_SNP [dm3] 2R_16931877_SNP [dm6]	A	G	2.643e^-4	0.708	INTRON Pkc53E
X	21845536	X_21845536_SNP [dm3] X_22443700_SNP [dm6]	T	G	2.654e^-4	0.708	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
X	16582512	X_16582512_SNP [dm3] X_16688479_SNP [dm6]	C	T	2.656e^-4	0.708	UPSTREAM Sep4 INTRON Sep4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8708095	X_8708095_SNP [dm3] X_8814062_SNP [dm6]	G	T	2.663e^-4	0.708	INTERGENIC
3L	14972029	3L_14972029_SNP [dm3] 3L_14978929_SNP [dm6]	C	T	2.665e^-4	0.708	UPSTREAM CG3349 INTERGENIC
3L	7811049	3L_7811049_SNP [dm3] 3L_7817949_SNP [dm6]	A	T	2.670e^-4	0.708	INTRON Pdp1	TF binding site mE1_TFBS_cad
2R	18869040	2R_18869040_SNP [dm3] 2R_22981517_SNP [dm6]	C	T	2.671e^-4	0.708	INTERGENIC
3L	20759720	3L_20759720_SNP [dm3] 3L_20766620_SNP [dm6]	G	A	2.672e^-4	0.708	INTERGENIC
3L	5371093	3L_5371093_SNP [dm3] 3L_5377993_SNP [dm6]	T	G	2.676e^-4	0.708	DOWNSTREAM Ir64a EXON CR45743
X	14720487	X_14720487_SNP [dm3] X_14826454_SNP [dm6]	C	G	2.678e^-4	0.708	UPSTREAM rut DOWNSTREAM CG14408 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	17541520	3R_17541520_SNP [dm3] 3R_21715798_SNP [dm6]	C	G	2.698e^-4	0.708	INTRON CG31176
X	3030133	X_3030133_INS [dm3] X_3136100_INS [dm6]	T	TTTTCTGAACATTC...	2.701e^-4	0.708	INTRON N	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	13513672	3L_13513672_SNP [dm3] 3L_13520572_SNP [dm6]	T	C	2.701e^-4	0.708	UPSTREAM CG10710 INTERGENIC
3R	7355577	3R_7355577_SNP [dm3] 3R_11529855_SNP [dm6]	G	A	2.708e^-4	0.708	INTERGENIC
2L	9923346	2L_9923346_SNP [dm3] 2L_9923346_SNP [dm6]	T	C	2.714e^-4	0.708	DOWNSTREAM CG4592 INTRON TbCMF46	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9923356	2L_9923356_SNP [dm3] 2L_9923356_SNP [dm6]	C	T	2.714e^-4	0.708	DOWNSTREAM CG4592 INTRON TbCMF46	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9923358	2L_9923358_SNP [dm3] 2L_9923358_SNP [dm6]	T	A	2.714e^-4	0.708	SPLICE_SITE_REGION TbCMF46 DOWNSTREAM CG4592 INTRON TbCMF46	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7394270	2L_7394270_SNP [dm3] 2L_7394270_SNP [dm6]	G	A	2.716e^-4	0.708	INTRON CG5160
3L	18844859	3L_18844859_SNP [dm3] 3L_18851759_SNP [dm6]	A	T	2.724e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	18179883	2R_18179883_INS [dm3] 2R_22292378_INS [dm6]	T	TT	2.725e^-4	0.708	EXON CR43422
2R	18602241	2R_18602241_SNP [dm3] 2R_22714736_SNP [dm6]	A	C	2.728e^-4	0.708	SYNONYMOUS_CODING CG30268	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10834936	2R_10834936_SNP [dm3] 2R_14947431_SNP [dm6]	G	T	2.736e^-4	0.708	INTRON aPKC	TF binding site BDTNP1_TFBS_bcd
3L	2290228	3L_2290228_SNP [dm3] 3L_2290228_SNP [dm6]	T	A	2.739e^-4	0.708	INTRON MsR2
2R	15404854	2R_15404854_SNP [dm3] 2R_19517349_SNP [dm6]	G	A	2.740e^-4	0.708	DOWNSTREAM sm INTERGENIC
2R	20103244	2R_20103244_SNP [dm3] 2R_24215721_SNP [dm6]	A	C	2.747e^-4	0.708	INTRON CG30419
2R	17074701	2R_17074701_SNP [dm3] 2R_21187196_SNP [dm6]	G	A	2.750e^-4	0.708	SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_sens
3L	7544801	3L_7544801_SNP [dm3] 3L_7551701_SNP [dm6]	C	T	2.750e^-4	0.708	INTERGENIC
3L	10127013	3L_10127013_SNP [dm3] 3L_10133913_SNP [dm6]	C	G	2.750e^-4	0.708	INTRON dpr6
3L	10388782	3L_10388782_SNP [dm3] 3L_10395682_SNP [dm6]	C	T	2.755e^-4	0.708	INTERGENIC
2L	9215617	2L_9215617_SNP [dm3] 2L_9215617_SNP [dm6]	G	T	2.758e^-4	0.708	INTRON tai
3L	7811039	3L_7811039_SNP [dm3] 3L_7817939_SNP [dm6]	C	T	2.758e^-4	0.708	INTRON Pdp1	TF binding site mE1_TFBS_cad
2R	19404891	2R_19404891_SNP [dm3] 2R_23517368_SNP [dm6]	T	C	2.771e^-4	0.708	INTERGENIC
X	2829565	X_2829565_SNP [dm3] X_2935532_SNP [dm6]	T	C	2.781e^-4	0.708	SYNONYMOUS_CODING CG3592 INTRON kirre
3L	10074568	3L_10074568_SNP [dm3] 3L_10081468_SNP [dm6]	G	C	2.781e^-4	0.708	INTRON dpr6
3R	22021674	3R_22021674_SNP [dm3] 3R_26195952_SNP [dm6]	G	T	2.784e^-4	0.708	INTRON CR44320
3L	6513186	3L_6513186_SNP [dm3] 3L_6520086_SNP [dm6]	G	T	2.798e^-4	0.708	INTRON sfl
2R	15002469	2R_15002469_SNP [dm3] 2R_19114964_SNP [dm6]	G	A	2.799e^-4	0.708	INTRON 5-HT1A
X	12161507	X_12161507_INS [dm3] X_12267474_INS [dm6]	G	GG	2.801e^-4	0.708	INTRON Ten-a
X	14720332	X_14720332_SNP [dm3] X_14826299_SNP [dm6]	G	A	2.810e^-4	0.708	UPSTREAM rut DOWNSTREAM CG14408 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14150518	3L_14150518_SNP [dm3] 3L_14157418_SNP [dm6]	A	T	2.819e^-4	0.708	INTERGENIC	regulatory region REDfly_CRMs
2L	3118817	2L_3118817_SNP [dm3] 2L_3118817_SNP [dm6]	G	A	2.820e^-4	0.708	INTRON toc
3R	7347881	3R_7347881_SNP [dm3] 3R_11522159_SNP [dm6]	C	T	2.820e^-4	0.708	INTERGENIC
X	4303058	X_4303058_SNP [dm3] X_4409025_SNP [dm6]	G	T	2.822e^-4	0.708	INTRON CR32773
2L	20569112	2L_20569112_SNP [dm3] 2L_20569112_SNP [dm6]	C	T	2.826e^-4	0.708	INTRON CR45347
3L	11377681	3L_11377681_SNP [dm3] 3L_11384581_SNP [dm6]	C	T	2.832e^-4	0.708	UPSTREAM CR42755 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	16665154	3L_16665154_SNP [dm3] 3L_16672054_SNP [dm6]	G	A	2.842e^-4	0.708	UTR_3_PRIME zetaCOP INTRON zetaCOP
3L	20955869	3L_20955869_SNP [dm3] 3L_20962769_SNP [dm6]	G	T	2.844e^-4	0.708	UTR_3_PRIME CG12983 UPSTREAM CG10587	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	7388356	2L_7388356_SNP [dm3] 2L_7388356_SNP [dm6]	T	G	2.845e^-4	0.708	UPSTREAM gudu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	16086433	2R_16086433_SNP [dm3] 2R_20198928_SNP [dm6]	A	C	2.856e^-4	0.708	INTERGENIC
2R	14458134	2R_14458134_SNP [dm3] 2R_18570629_SNP [dm6]	C	A	2.867e^-4	0.708	INTRON GEFmeso
3L	11505068	3L_11505068_SNP [dm3] 3L_11511968_SNP [dm6]	G	C	2.871e^-4	0.708	UPSTREAM Sgs3 INTERGENIC	regulatory region REDfly_CRMs transposable element FlyBase
3L	2883528	3L_2883528_DEL [dm3] 3L_2883528_DEL [dm6]	TA	C	2.876e^-4	0.708	DOWNSTREAM spz5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20558648	2L_20558648_SNP [dm3] 2L_20558648_SNP [dm6]	C	T	2.879e^-4	0.708	INTERGENIC
2L	20270266	2L_20270266_SNP [dm3] 2L_20270266_SNP [dm6]	A	T	2.880e^-4	0.708	INTERGENIC
2R	15404938	2R_15404938_SNP [dm3] 2R_19517433_SNP [dm6]	G	T	2.880e^-4	0.708	DOWNSTREAM sm INTERGENIC
2R	10544771	2R_10544771_SNP [dm3] 2R_14657266_SNP [dm6]	G	C	2.892e^-4	0.708	SYNONYMOUS_CODING Adgf-E
2L	6423441	2L_6423441_SNP [dm3] 2L_6423441_SNP [dm6]	G	C	2.893e^-4	0.708	UPSTREAM Tig & 1 other INTERGENIC
2L	19342144	2L_19342144_INS [dm3] 2L_19342144_INS [dm6]	T	TT	2.899e^-4	0.708	INTRON dnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18227896	3L_18227896_SNP [dm3] 3L_18234796_SNP [dm6]	C	T	2.902e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13637442	2R_13637442_SNP [dm3] 2R_17749937_SNP [dm6]	T	C	2.916e^-4	0.708	NON_SYNONYMOUS_CODING CG10931 UPSTREAM CG5002	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9911788	2L_9911788_SNP [dm3] 2L_9911788_SNP [dm6]	A	G	2.929e^-4	0.708	INTRON Etl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	5752351	2R_5752351_SNP [dm3] 2R_9864846_SNP [dm6]	T	A	2.932e^-4	0.708	NON_SYNONYMOUS_CODING cbx UPSTREAM Ntmt DOWNSTREAM CG30010 INTRON cbx	TF binding site mE1_TFBS_sens
2R	14557325	2R_14557325_SNP [dm3] 2R_18669820_SNP [dm6]	C	T	2.932e^-4	0.708	INTRON edl
3R	2225492	3R_2225492_SNP [dm3] 3R_6399770_SNP [dm6]	A	G	2.937e^-4	0.708	INTRON Dmtn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	8940559	3L_8940559_SNP [dm3] 3L_8947459_SNP [dm6]	C	A	2.941e^-4	0.708	INTRON CG43783 & 1 other
X	2577884	X_2577884_SNP [dm3] X_2683851_SNP [dm6]	C	T	2.943e^-4	0.708	UPSTREAM CG2652 & 1 other INTERGENIC
X	21845860	X_21845860_SNP [dm3] X_22444024_SNP [dm6]	C	T	2.948e^-4	0.708	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	12126483	2L_12126483_SNP [dm3] 2L_12126483_SNP [dm6]	G	A	2.953e^-4	0.708	SYNONYMOUS_CODING CG17211
3L	11424137	3L_11424137_SNP [dm3] 3L_11431037_SNP [dm6]	C	T	2.959e^-4	0.708	INTERGENIC
3R	10127837	3R_10127837_SNP [dm3] 3R_14302115_SNP [dm6]	G	A	2.959e^-4	0.708	UTR_3_PRIME CG12207 UPSTREAM CG3259
2L	8311191	2L_8311191_SNP [dm3] 2L_8311191_SNP [dm6]	A	G	2.970e^-4	0.708	UTR_5_PRIME CG7810 UPSTREAM CG7806	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	10834948	2R_10834948_SNP [dm3] 2R_14947443_SNP [dm6]	T	G	2.972e^-4	0.708	INTRON aPKC	TF binding site BDTNP1_TFBS_bcd
3L	7356316	3L_7356316_SNP [dm3] 3L_7363216_SNP [dm6]	C	T	2.979e^-4	0.708	NON_SYNONYMOUS_CODING Sec63	TF binding site mE1_TFBS_chinmo
2R	19596113	2R_19596113_SNP [dm3] 2R_23708590_SNP [dm6]	G	T	2.993e^-4	0.708	UPSTREAM CR45326 DOWNSTREAM l_2_tid INTRON l_2_not & 1 other	TF binding site mE1_TFBS_cad
3R	23777457	3R_23777457_SNP [dm3] 3R_27951735_SNP [dm6]	G	A	2.994e^-4	0.708	SYNONYMOUS_CODING Gp93 DOWNSTREAM CG4951	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12615786	3L_12615786_SNP [dm3] 3L_12622686_SNP [dm6]	G	A	2.996e^-4	0.708	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	12175622	2L_12175622_SNP [dm3] 2L_12175622_SNP [dm6]	A	G	2.996e^-4	0.708	SYNONYMOUS_CODING atilla UPSTREAM CR43356 INTRON aret	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	12472711	2L_12472711_SNP [dm3] 2L_12472711_SNP [dm6]	T	C	2.999e^-4	0.708	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7110313	2L_7110313_SNP [dm3] 2L_7110313_SNP [dm6]	A	C	3.001e^-4	0.708	INTRON Pvf3
X	3602346	X_3602346_SNP [dm3] X_3708313_SNP [dm6]	A	T	3.001e^-4	0.708	INTRON Rala
3L	21172154	3L_21172154_SNP [dm3] 3L_21179054_SNP [dm6]	T	C	3.007e^-4	0.708	SYNONYMOUS_CODING chb	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	12477370	2L_12477370_SNP [dm3] 2L_12477370_SNP [dm6]	A	C	3.007e^-4	0.708	INTRON bun
X	1643390	X_1643390_INS [dm3] X_1749357_INS [dm6]	G	GCAC	3.008e^-4	0.708	INTRON Scgdelta	TF binding site mE1_TFBS_chinmo
3R	14359752	3R_14359752_DEL [dm3] 3R_18534030_DEL [dm6]	GTAAG	G	3.010e^-4	0.708	INTRON fru
2R	18395777	2R_18395777_SNP [dm3] 2R_22508272_SNP [dm6]	T	C	3.012e^-4	0.708	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13826597	2L_13826597_SNP [dm3] 2L_13826597_SNP [dm6]	G	A	3.014e^-4	0.708	SYNONYMOUS_CODING tam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	2421258	3R_2421258_SNP [dm3] 3R_6595536_SNP [dm6]	A	G	3.019e^-4	0.708	INTERGENIC	TF binding site mE1_TFBS_inv
2R	17974228	2R_17974228_SNP [dm3] 2R_22086723_SNP [dm6]	G	A	3.025e^-4	0.708	DOWNSTREAM Synj INTRON CG13502
3L	2290239	3L_2290239_DEL [dm3] 3L_2290239_DEL [dm6]	GCGCCAAA	G	3.028e^-4	0.708	INTRON MsR2
2R	11543428	2R_11543428_SNP [dm3] 2R_15655923_SNP [dm6]	C	T	3.032e^-4	0.708	INTRON CG42524
X	21845680	X_21845680_INS [dm3] X_22443844_INS [dm6]	T	TGAAT	3.033e^-4	0.708	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	9985299	2L_9985299_SNP [dm3] 2L_9985299_SNP [dm6]	T	A	3.034e^-4	0.708	UPSTREAM CR13130 INTRON bib	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21848196	X_21848196_DEL [dm3] X_22446360_DEL [dm6]	TAAGAAAAC	T	3.036e^-4	0.708	DOWNSTREAM CG14615 INTRON CG14621	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11528127	3L_11528127_SNP [dm3] 3L_11535027_SNP [dm6]	C	G	3.037e^-4	0.708	UPSTREAM Mob2 INTRON Mob2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	7164886	X_7164886_SNP [dm3] X_7270853_SNP [dm6]	T	C	3.043e^-4	0.708	INTRON CR44357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	14100445	3L_14100445_SNP [dm3] 3L_14107345_SNP [dm6]	C	A	3.045e^-4	0.708	INTRON Sox21a	TF binding site mE1_TFBS_cad
2R	14294579	2R_14294579_SNP [dm3] 2R_18407074_SNP [dm6]	A	G	3.045e^-4	0.708	SYNONYMOUS_CODING GstE7 UPSTREAM GstE8 DOWNSTREAM GstE6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9377211	3L_9377211_SNP [dm3] 3L_9384111_SNP [dm6]	C	T	3.048e^-4	0.708	UTR_5_PRIME Hsp27	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	13740760	2R_13740760_INS [dm3] 2R_17853255_INS [dm6]	C	CC	3.056e^-4	0.708	UPSTREAM CG30323 INTRON olf186-F	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	16764360	2R_16764360_SNP [dm3] 2R_20876855_SNP [dm6]	C	A	3.064e^-4	0.708	INTRON Ipk1
2L	3391517	2L_3391517_SNP [dm3] 2L_3391517_SNP [dm6]	C	A	3.068e^-4	0.708	INTERGENIC
3L	8139021	3L_8139021_SNP [dm3] 3L_8145921_SNP [dm6]	A	G	3.069e^-4	0.708	NON_SYNONYMOUS_CODING CG13676
3L	20981581	3L_20981581_SNP [dm3] 3L_20988481_SNP [dm6]	T	A	3.081e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	14070408	2L_14070408_INS [dm3] 2L_14070408_INS [dm6]	C	CTTTT	3.082e^-4	0.708	INTRON nAChRalpha5
2L	14215809	2L_14215809_SNP [dm3] 2L_14215809_SNP [dm6]	C	G	3.083e^-4	0.708	INTRON Dyrk2	TF binding site mE1_TFBS_inv
3L	14155442	3L_14155442_SNP [dm3] 3L_14162342_SNP [dm6]	G	T	3.089e^-4	0.708	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	8468263	X_8468263_SNP [dm3] X_8574230_SNP [dm6]	C	T	3.097e^-4	0.708	UPSTREAM CG12065 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	13076056	2R_13076056_SNP [dm3] 2R_17188551_SNP [dm6]	T	A	3.104e^-4	0.708	UPSTREAM CR44388 & 1 other DOWNSTREAM CR44389 INTERGENIC
2L	7894943	2L_7894943_SNP [dm3] 2L_7894943_SNP [dm6]	G	A	3.107e^-4	0.708	SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2682089	3L_2682089_SNP [dm3] 3L_2682089_SNP [dm6]	A	T	3.108e^-4	0.708	INTRON Fife
3L	9519288	3L_9519288_DEL [dm3] 3L_9526188_DEL [dm6]	GT	G	3.110e^-4	0.708	UPSTREAM CG33700 INTERGENIC
3L	800933	3L_800933_SNP [dm3] 3L_800933_SNP [dm6]	T	C	3.110e^-4	0.708	INTERGENIC
X	8471573	X_8471573_SNP [dm3] X_8577540_SNP [dm6]	C	G	3.114e^-4	0.708	INTRON CG12065
X	21848117	X_21848117_SNP [dm3] X_22446281_SNP [dm6]	T	C	3.118e^-4	0.708	DOWNSTREAM CG14615 INTRON CG14621	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7869507	3L_7869507_SNP [dm3] 3L_7876407_SNP [dm6]	A	G	3.125e^-4	0.708	INTRON CG32365
X	1643389	X_1643389_SNP [dm3] X_1749356_SNP [dm6]	A	T	3.128e^-4	0.708	INTRON Scgdelta	TF binding site mE1_TFBS_chinmo
2R	16764348	2R_16764348_SNP [dm3] 2R_20876843_SNP [dm6]	T	C	3.130e^-4	0.708	INTRON Ipk1
3L	15994729	3L_15994729_SNP [dm3] 3L_16001629_SNP [dm6]	A	C	3.131e^-4	0.708	INTRON CG5830
3L	11458493	3L_11458493_SNP [dm3] 3L_11465393_SNP [dm6]	A	G	3.135e^-4	0.708	UPSTREAM CG6140 INTRON CG6140	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	7811053	3L_7811053_SNP [dm3] 3L_7817953_SNP [dm6]	A	G	3.136e^-4	0.708	INTRON Pdp1	TF binding site mE1_TFBS_cad
3L	17891600	3L_17891600_SNP [dm3] 3L_17898500_SNP [dm6]	C	A	3.139e^-4	0.708	DOWNSTREAM Prestin INTERGENIC
3L	4695018	3L_4695018_SNP [dm3] 3L_4695018_SNP [dm6]	A	G	3.142e^-4	0.708	UPSTREAM CG15876 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7318370	2R_7318370_SNP [dm3] 2R_11430865_SNP [dm6]	T	C	3.145e^-4	0.708	INTERGENIC
3R	17541406	3R_17541406_SNP [dm3] 3R_21715684_SNP [dm6]	G	T	3.151e^-4	0.708	INTRON CG31176
2L	964547	2L_964547_SNP [dm3] 2L_964547_SNP [dm6]	A	G	3.151e^-4	0.708	INTERGENIC
2R	19390248	2R_19390248_SNP [dm3] 2R_23502725_SNP [dm6]	G	T	3.155e^-4	0.708	UPSTREAM CG13559 INTERGENIC	TF binding site mE1_TFBS_inv
2R	10668384	2R_10668384_SNP [dm3] 2R_14780879_SNP [dm6]	T	A	3.155e^-4	0.708	INTRON kn
3R	19367947	3R_19367947_SNP [dm3] 3R_23542225_SNP [dm6]	G	C	3.159e^-4	0.708	INTERGENIC
3R	22440916	3R_22440916_SNP [dm3] 3R_26615194_SNP [dm6]	C	T	3.165e^-4	0.708	INTERGENIC
3R	17542436	3R_17542436_SNP [dm3] 3R_21716714_SNP [dm6]	C	G	3.168e^-4	0.708	INTRON CG31176
2R	5399782	2R_5399782_SNP [dm3] 2R_9512277_SNP [dm6]	G	A	3.172e^-4	0.708	INTRON brp
X	5564020	X_5564020_SNP [dm3] X_5669987_SNP [dm6]	A	G	3.174e^-4	0.708	DOWNSTREAM Rab18 INTRON CG4119	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15686199	2R_15686199_SNP [dm3] 2R_19798694_SNP [dm6]	T	C	3.183e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17934276	2R_17934276_SNP [dm3] 2R_22046771_SNP [dm6]	G	A	3.188e^-4	0.708	INTERGENIC
2R	16707664	2R_16707664_SNP [dm3] 2R_20820159_SNP [dm6]	C	T	3.191e^-4	0.708	INTERGENIC
2R	1748992	2R_1748992_SNP [dm3] 2R_5861487_SNP [dm6]	G	C	3.193e^-4	0.708	DOWNSTREAM dpr12 INTERGENIC
2R	19203500	2R_19203500_SNP [dm3] 2R_23315977_SNP [dm6]	C	T	3.197e^-4	0.708	INTERGENIC
2L	16332239	2L_16332239_SNP [dm3] 2L_16332239_SNP [dm6]	C	T	3.199e^-4	0.708	NON_SYNONYMOUS_CODING CG31817	TF binding site mE1_TFBS_sens
3R	6189559	3R_6189559_SNP [dm3] 3R_10363837_SNP [dm6]	A	C	3.201e^-4	0.708	INTRON Rfx	TF binding site mE1_TFBS_cad
3L	2676248	3L_2676248_SNP [dm3] 3L_2676248_SNP [dm6]	C	T	3.203e^-4	0.708	INTRON Fife	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	5541153	X_5541153_SNP [dm3] X_5647120_SNP [dm6]	G	T	3.207e^-4	0.708	INTRON CG42492	TF binding site mE1_TFBS_HSA
3L	18021548	3L_18021548_SNP [dm3] 3L_18028448_SNP [dm6]	G	A	3.210e^-4	0.708	INTRON Eip75B
3L	1610056	3L_1610056_INS [dm3] 3L_1610056_INS [dm6]	A	AT	3.215e^-4	0.708	DOWNSTREAM CG12105 INTRON CG33791 & 1 other
2L	12608580	2L_12608580_SNP [dm3] 2L_12608580_SNP [dm6]	C	A	3.215e^-4	0.708	INTRON nub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	5576297	3L_5576297_SNP [dm3] 3L_5583197_SNP [dm6]	G	T	3.220e^-4	0.708	UPSTREAM l_3_psg2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	2939776	3L_2939776_SNP [dm3] 3L_2939776_SNP [dm6]	C	G	3.221e^-4	0.708	INTRON Shab
3L	14116579	3L_14116579_SNP [dm3] 3L_14123479_SNP [dm6]	G	T	3.221e^-4	0.708	INTRON Sox21b
X	3322853	X_3322853_SNP [dm3] X_3428820_SNP [dm6]	A	C	3.222e^-4	0.708	INTRON CR44999 & 1 other	transposable element FlyBase
3L	11935974	3L_11935974_SNP [dm3] 3L_11942874_SNP [dm6]	T	C	3.223e^-4	0.708	SYNONYMOUS_CODING Rpt4R DOWNSTREAM CG5883
X	16151395	X_16151395_SNP [dm3] X_16257362_SNP [dm6]	C	A	3.224e^-4	0.708	INTERGENIC
2R	11734134	2R_11734134_SNP [dm3] 2R_15846629_SNP [dm6]	C	T	3.224e^-4	0.708	INTRON tun & 1 other	TF binding site mE1_TFBS_sens
2R	18273946	2R_18273946_SNP [dm3] 2R_22386441_SNP [dm6]	T	C	3.226e^-4	0.708	UTR_5_PRIME CG13506 UPSTREAM CR44757
2R	16238908	2R_16238908_SNP [dm3] 2R_20351403_SNP [dm6]	A	G	3.247e^-4	0.708	INTERGENIC
X	4494874	X_4494874_SNP [dm3] X_4600841_SNP [dm6]	A	T	3.249e^-4	0.708	INTRON CR32773	TF binding site BDTNP1_TFBS_dl
2R	9586179	2R_9586179_INS [dm3] 2R_13698674_INS [dm6]	A	ATCTG	3.251e^-4	0.708	INTRON fas
3L	14118058	3L_14118058_SNP [dm3] 3L_14124958_SNP [dm6]	A	C	3.256e^-4	0.708	INTRON Sox21b
2L	9157681	2L_9157681_SNP [dm3] 2L_9157681_SNP [dm6]	A	G	3.256e^-4	0.708	INTRON CG32982	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5080656	2L_5080656_SNP [dm3] 2L_5080656_SNP [dm6]	T	A	3.257e^-4	0.708	INTRON pgant5
2L	2648501	2L_2648501_SNP [dm3] 2L_2648501_SNP [dm6]	A	T	3.261e^-4	0.708	NON_SYNONYMOUS_CODING CG33125 UTR_3_PRIME CG33125 UPSTREAM CG9962 DOWNSTREAM CG43851
X	7225352	X_7225352_SNP [dm3] X_7331319_SNP [dm6]	T	A	3.262e^-4	0.708	NON_SYNONYMOUS_CODING CG42780 DOWNSTREAM CG18155 INTRON CR44357 & 1 other
3L	19792415	3L_19792415_SNP [dm3] 3L_19799315_SNP [dm6]	C	A	3.265e^-4	0.708	NON_SYNONYMOUS_CODING Ir76a UTR_3_PRIME CG14102 DOWNSTREAM HLH106
2L	13695670	2L_13695670_SNP [dm3] 2L_13695670_SNP [dm6]	T	A	3.267e^-4	0.708	INTRON CG31814
2L	15438219	2L_15438219_SNP [dm3] 2L_15438219_SNP [dm6]	C	T	3.273e^-4	0.708	INTERGENIC
X	19041223	X_19041223_INS [dm3] X_19147190_INS [dm6]	A	ACATATA	3.276e^-4	0.708	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	19469696	2L_19469696_SNP [dm3] 2L_19469696_SNP [dm6]	T	C	3.279e^-4	0.708	DOWNSTREAM CR45723 EXON CR45722
3L	21155998	3L_21155998_SNP [dm3] 3L_21162898_SNP [dm6]	C	A	3.289e^-4	0.708	INTRON Ac78C
X	21845564	X_21845564_SNP [dm3] X_22443728_SNP [dm6]	A	T	3.290e^-4	0.708	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	9026311	3L_9026311_INS [dm3] 3L_9033211_INS [dm6]	T	TA	3.293e^-4	0.708	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	9044592	X_9044592_SNP [dm3] X_9150559_SNP [dm6]	G	T	3.294e^-4	0.708	SYNONYMOUS_CODING dalao	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14147721	3L_14147721_SNP [dm3] 3L_14154621_SNP [dm6]	A	C	3.303e^-4	0.708	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4466076	X_4466076_DEL [dm3] X_4572043_DEL [dm6]	TATGTACATACATACTCGT...	T	3.304e^-4	0.708	UPSTREAM CG12684 INTRON CR32773
X	7756188	X_7756188_SNP [dm3] X_7862155_SNP [dm6]	A	G	3.305e^-4	0.708	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	15044523	2R_15044523_SNP [dm3] 2R_19157018_SNP [dm6]	C	T	3.310e^-4	0.708	INTRON ena
2R	10066233	2R_10066233_SNP [dm3] 2R_14178728_SNP [dm6]	T	C	3.313e^-4	0.708	SYNONYMOUS_CODING cg
3L	14247504	3L_14247504_SNP [dm3] 3L_14254404_SNP [dm6]	C	T	3.314e^-4	0.708	INTERGENIC
2L	11380582	2L_11380582_MNP [dm3] 2L_11380582_MNP [dm6]	CAT	GCA	3.316e^-4	0.708	INTERGENIC	regulatory region REDfly_CRMs
3L	14753623	3L_14753623_SNP [dm3] 3L_14760523_SNP [dm6]	A	G	3.320e^-4	0.708	UTR_3_PRIME CG33260 INTRON Trl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	1643388	X_1643388_SNP [dm3] X_1749355_SNP [dm6]	G	A	3.325e^-4	0.708	INTRON Scgdelta	TF binding site mE1_TFBS_chinmo
3L	7392420	3L_7392420_SNP [dm3] 3L_7399320_SNP [dm6]	C	A	3.329e^-4	0.708	NON_SYNONYMOUS_CODING CG8562 UPSTREAM CG18417	TF binding site mE1_TFBS_cad
X	14239595	X_14239595_DEL [dm3] X_14345562_DEL [dm6]	AA	A	3.334e^-4	0.708	INTRON dpr8
2R	17433621	2R_17433621_SNP [dm3] 2R_21546116_SNP [dm6]	A	T	3.341e^-4	0.708	UPSTREAM Egfr INTRON Egfr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Trl
3L	19024288	3L_19024288_SNP [dm3] 3L_19031188_SNP [dm6]	T	A	3.343e^-4	0.708	INTRON nkd	TF binding site BDTNP1_TFBS_dl
3R	6966512	3R_6966512_SNP [dm3] 3R_11140790_SNP [dm6]	A	C	3.350e^-4	0.708	INTERGENIC
2R	19024055	2R_19024055_SNP [dm3] 2R_23136532_SNP [dm6]	A	G	3.350e^-4	0.708	INTERGENIC
2R	15401381	2R_15401381_SNP [dm3] 2R_19513876_SNP [dm6]	C	G	3.350e^-4	0.708	UPSTREAM Ir56d INTERGENIC
2L	15255394	2L_15255394_SNP [dm3] 2L_15255394_SNP [dm6]	G	A	3.351e^-4	0.708	SYNONYMOUS_CODING Pol32 DOWNSTREAM dao	TF binding site mE1_TFBS_HSA
2L	2259179	2L_2259179_SNP [dm3] 2L_2259179_SNP [dm6]	A	C	3.357e^-4	0.708	DOWNSTREAM CR44788 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	13072308	2R_13072308_DEL [dm3] 2R_17184803_DEL [dm6]	GG	G	3.361e^-4	0.708	UPSTREAM CR44387 INTERGENIC
2L	2727798	2L_2727798_SNP [dm3] 2L_2727798_SNP [dm6]	G	C	3.362e^-4	0.708	INTRON CG31689
2L	10398237	2L_10398237_SNP [dm3] 2L_10398237_SNP [dm6]	A	T	3.364e^-4	0.708	INTRON Cnot4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12900579	3L_12900579_SNP [dm3] 3L_12907479_SNP [dm6]	T	A	3.367e^-4	0.708	INTERGENIC
X	6151319	X_6151319_SNP [dm3] X_6257286_SNP [dm6]	T	C	3.375e^-4	0.708	UTR_3_PRIME Spx DOWNSTREAM schlank
2L	8891623	2L_8891623_SNP [dm3] 2L_8891623_SNP [dm6]	A	G	3.375e^-4	0.708	INTRON CG42713
2R	20165824	2R_20165824_SNP [dm3] 2R_24278301_SNP [dm6]	C	A	3.382e^-4	0.708	INTRON nvy	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18050224	2R_18050224_SNP [dm3] 2R_22162719_SNP [dm6]	C	G	3.384e^-4	0.708	INTRON a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25373353	3R_25373353_SNP [dm3] 3R_29547631_SNP [dm6]	G	T	3.384e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2407614	2L_2407614_SNP [dm3] 2L_2407614_SNP [dm6]	C	T	3.385e^-4	0.708	SYNONYMOUS_CODING VGlut
3L	12875460	3L_12875460_SNP [dm3] 3L_12882360_SNP [dm6]	C	T	3.386e^-4	0.708	INTERGENIC
3L	3547744	3L_3547744_SNP [dm3] 3L_3547744_SNP [dm6]	A	T	3.393e^-4	0.708	INTRON Eip63E
3L	10073973	3L_10073973_SNP [dm3] 3L_10080873_SNP [dm6]	A	G	3.402e^-4	0.708	INTRON dpr6
2L	12452368	2L_12452368_SNP [dm3] 2L_12452368_SNP [dm6]	T	C	3.405e^-4	0.708	NON_SYNONYMOUS_CODING CG5418 DOWNSTREAM Oatp33Eb	TF binding site mE1_TFBS_cad
X	4479817	X_4479817_SNP [dm3] X_4585784_SNP [dm6]	T	G	3.408e^-4	0.708	INTRON CR32773	TF binding site mE1_TFBS_HSA
2L	8574517	2L_8574517_SNP [dm3] 2L_8574517_SNP [dm6]	G	T	3.416e^-4	0.708	INTRON Sema-1a
2R	14354081	2R_14354081_DEL [dm3] 2R_18466576_DEL [dm6]	TT	T	3.423e^-4	0.708	INTRON CG30116
X	3972926	X_3972926_SNP [dm3] X_4078893_SNP [dm6]	G	A	3.437e^-4	0.708	SYNONYMOUS_CODING CG43689	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	3776429	3L_3776429_SNP [dm3] 3L_3776429_SNP [dm6]	G	A	3.439e^-4	0.708	INTRON CG32264	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	21845546	X_21845546_SNP [dm3] X_22443710_SNP [dm6]	T	C	3.442e^-4	0.708	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	6305556	3L_6305556_SNP [dm3] 3L_6312456_SNP [dm6]	G	A	3.445e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	8099564	3L_8099564_SNP [dm3] 3L_8106464_SNP [dm6]	G	A	3.450e^-4	0.708	SYNONYMOUS_CODING Ect4 UTR_3_PRIME Ect4 INTRON Ect4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	4479624	X_4479624_SNP [dm3] X_4585591_SNP [dm6]	C	G	3.452e^-4	0.708	INTRON CR32773	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	15011914	3R_15011914_SNP [dm3] 3R_19186192_SNP [dm6]	T	A	3.455e^-4	0.708	INTRON CG31475
X	9389916	X_9389916_SNP [dm3] X_9495883_SNP [dm6]	A	G	3.458e^-4	0.708	UTR_5_PRIME mgl INTRON mgl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	5396527	3L_5396527_SNP [dm3] 3L_5403427_SNP [dm6]	A	C	3.458e^-4	0.708	INTERGENIC
2L	18218548	2L_18218548_DEL [dm3] 2L_18218548_DEL [dm6]	GG	G	3.468e^-4	0.708	INTRON CG42750
2L	13802751	2L_13802751_SNP [dm3] 2L_13802751_SNP [dm6]	A	G	3.475e^-4	0.708	UPSTREAM CAH1 INTERGENIC
2L	9911658	2L_9911658_SNP [dm3] 2L_9911658_SNP [dm6]	C	T	3.480e^-4	0.708	SYNONYMOUS_CODING Etl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	18706570	3R_18706570_SNP [dm3] 3R_22880848_SNP [dm6]	G	A	3.480e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	3501170	2R_3501170_INS [dm3] 2R_7613665_INS [dm6]	T	TCAGATG	3.480e^-4	0.708	UTR_5_PRIME CG1358 INTRON CG1358	TF binding site BDTNP1_TFBS_twi
X	21804358	X_21804358_SNP [dm3] X_22402523_SNP [dm6]	T	G	3.483e^-4	0.708	INTERGENIC	transposable element FlyBase
3L	11504515	3L_11504515_SNP [dm3] 3L_11511415_SNP [dm6]	G	A	3.483e^-4	0.708	UPSTREAM CG33272 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	10772684	2R_10772684_SNP [dm3] 2R_14885179_SNP [dm6]	C	T	3.488e^-4	0.708	DOWNSTREAM Cyp6a21 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_Trl
3L	18021557	3L_18021557_SNP [dm3] 3L_18028457_SNP [dm6]	A	G	3.492e^-4	0.708	INTRON Eip75B
3L	6153416	3L_6153416_SNP [dm3] 3L_6160316_SNP [dm6]	C	T	3.494e^-4	0.708	UPSTREAM Cpr65Az INTERGENIC
X	9771404	X_9771404_SNP [dm3] X_9877371_SNP [dm6]	G	T	3.498e^-4	0.708	UPSTREAM CG15247 INTERGENIC
3R	4247293	3R_4247293_SNP [dm3] 3R_8421571_SNP [dm6]	T	C	3.499e^-4	0.708	UPSTREAM Obp85a INTRON CG45263
2L	18752067	2L_18752067_SNP [dm3] 2L_18752067_SNP [dm6]	G	T	3.500e^-4	0.708	INTERGENIC
3L	5216689	3L_5216689_SNP [dm3] 3L_5223589_SNP [dm6]	A	G	3.501e^-4	0.708	INTRON shep
3R	20520733	3R_20520733_SNP [dm3] 3R_24695011_SNP [dm6]	A	C	3.504e^-4	0.708	SYNONYMOUS_CODING slo
2L	17663805	2L_17663805_SNP [dm3] 2L_17663805_SNP [dm6]	G	A	3.506e^-4	0.708	INTRON CadN
3L	11935977	3L_11935977_SNP [dm3] 3L_11942877_SNP [dm6]	T	C	3.510e^-4	0.708	SYNONYMOUS_CODING Rpt4R DOWNSTREAM CG5883
3L	6336502	3L_6336502_SNP [dm3] 3L_6343402_SNP [dm6]	A	T	3.512e^-4	0.708	INTRON CG13300
3L	14147961	3L_14147961_SNP [dm3] 3L_14154861_SNP [dm6]	G	A	3.515e^-4	0.708	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	21845852	X_21845852_SNP [dm3] X_22444016_SNP [dm6]	C	T	3.517e^-4	0.708	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	22025869	2L_22025869_SNP [dm3] 2L_22025869_SNP [dm6]	C	T	3.520e^-4	0.708	DOWNSTREAM tio INTERGENIC
2R	17065214	2R_17065214_SNP [dm3] 2R_21177709_SNP [dm6]	T	A	3.534e^-4	0.708	DOWNSTREAM CG4286 INTRON Pu	TF binding site mE1_TFBS_cad
3L	11723497	3L_11723497_SNP [dm3] 3L_11730397_SNP [dm6]	G	A	3.536e^-4	0.708	SYNONYMOUS_CODING CG32088
2R	17267361	2R_17267361_SNP [dm3] 2R_21379856_SNP [dm6]	A	T	3.550e^-4	0.708	UPSTREAM cv-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	13822648	2L_13822648_SNP [dm3] 2L_13822648_SNP [dm6]	A	T	3.551e^-4	0.708	INTRON b	TF binding site mE1_TFBS_cad
2L	13802757	2L_13802757_SNP [dm3] 2L_13802757_SNP [dm6]	C	A	3.552e^-4	0.708	UPSTREAM CAH1 INTERGENIC
3R	26986742	3R_26986742_SNP [dm3] 3R_31161020_SNP [dm6]	T	C	3.554e^-4	0.708	SYNONYMOUS_CODING stops INTRON Gycbeta100B
3L	4694990	3L_4694990_SNP [dm3] 3L_4694990_SNP [dm6]	C	T	3.563e^-4	0.708	UPSTREAM CG15876 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6931063	3L_6931063_SNP [dm3] 3L_6937963_SNP [dm6]	G	A	3.565e^-4	0.708	DOWNSTREAM CR45414 INTERGENIC
3L	9026032	3L_9026032_SNP [dm3] 3L_9032932_SNP [dm6]	T	C	3.567e^-4	0.708	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	6184052	3L_6184052_SNP [dm3] 3L_6190952_SNP [dm6]	G	T	3.569e^-4	0.708	NON_SYNONYMOUS_CODING CG7386	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9918493	2L_9918493_DEL [dm3] 2L_9918493_DEL [dm6]	GGCTTACTGGG...	AACTACC	3.580e^-4	0.708	UPSTREAM CG4598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
X	9389205	X_9389205_SNP [dm3] X_9495172_SNP [dm6]	C	A	3.581e^-4	0.708	INTRON mgl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2R	10887475	2R_10887475_SNP [dm3] 2R_14999970_SNP [dm6]	A	T	3.583e^-4	0.708	INTERGENIC
2R	3664167	2R_3664167_SNP [dm3] 2R_7776662_SNP [dm6]	C	T	3.588e^-4	0.708	INTRON CG30497 & 1 other
3L	903468	3L_903468_SNP [dm3] 3L_903468_SNP [dm6]	T	G	3.589e^-4	0.708	NON_SYNONYMOUS_CODING CG13905
3R	15412605	3R_15412605_SNP [dm3] 3R_19586883_SNP [dm6]	T	G	3.593e^-4	0.708	DOWNSTREAM snoRNA:Me18S-A1374 INTRON Dys
3L	19630877	3L_19630877_SNP [dm3] 3L_19637777_SNP [dm6]	A	T	3.598e^-4	0.708	UTR_3_PRIME CG8786	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	9951902	2L_9951902_SNP [dm3] 2L_9951902_SNP [dm6]	C	T	3.599e^-4	0.708	DOWNSTREAM CG13126 INTERGENIC
X	3643465	X_3643465_SNP [dm3] X_3749432_SNP [dm6]	A	T	3.599e^-4	0.708	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11384299	2L_11384299_SNP [dm3] 2L_11384299_SNP [dm6]	C	T	3.616e^-4	0.708	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2L	13332628	2L_13332628_SNP [dm3] 2L_13332628_SNP [dm6]	T	A	3.622e^-4	0.708	INTERGENIC
3L	21172606	3L_21172606_SNP [dm3] 3L_21179506_SNP [dm6]	C	T	3.634e^-4	0.708	SYNONYMOUS_CODING chb	TF binding site mE1_TFBS_cad
2R	14557247	2R_14557247_SNP [dm3] 2R_18669742_SNP [dm6]	A	T	3.635e^-4	0.708	INTRON edl
3L	7807987	3L_7807987_SNP [dm3] 3L_7814887_SNP [dm6]	G	A	3.643e^-4	0.708	UTR_3_PRIME Pdp1
2R	14279572	2R_14279572_SNP [dm3] 2R_18392067_SNP [dm6]	G	C	3.657e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10189200	3R_10189200_SNP [dm3] 3R_14363478_SNP [dm6]	G	A	3.661e^-4	0.708	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1949322	2L_1949322_SNP [dm3] 2L_1949322_SNP [dm6]	C	A	3.665e^-4	0.708	DOWNSTREAM erm INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3603036	X_3603036_SNP [dm3] X_3709003_SNP [dm6]	G	T	3.671e^-4	0.708	INTRON Rala
2L	7999738	2L_7999738_SNP [dm3] 2L_7999738_SNP [dm6]	C	A	3.672e^-4	0.708	UTR_3_PRIME Wwox DOWNSTREAM Sirup INTRON Wwox	TF binding site BDTNP1_TFBS_twi
2L	7999739	2L_7999739_SNP [dm3] 2L_7999739_SNP [dm6]	T	A	3.672e^-4	0.708	UTR_3_PRIME Wwox DOWNSTREAM Sirup INTRON Wwox	TF binding site BDTNP1_TFBS_twi
2R	11118727	2R_11118727_SNP [dm3] 2R_15231222_SNP [dm6]	T	A	3.681e^-4	0.708	INTRON Fs EXON CR44370
2L	7999813	2L_7999813_DEL [dm3] 2L_7999813_DEL [dm6]	ATATTTAAAAAACA...	A	3.681e^-4	0.708	UTR_3_PRIME Wwox DOWNSTREAM Sirup	TF binding site BDTNP1_TFBS_twi
3L	2531564	3L_2531564_SNP [dm3] 3L_2531564_SNP [dm6]	G	A	3.684e^-4	0.708	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	13741016	2R_13741016_SNP [dm3] 2R_17853511_SNP [dm6]	T	C	3.686e^-4	0.708	SYNONYMOUS_CODING CG30323 INTRON olf186-F
2R	12393176	2R_12393176_SNP [dm3] 2R_16505671_SNP [dm6]	C	T	3.688e^-4	0.708	INTRON Sema-2a
2L	13914316	2L_13914316_SNP [dm3] 2L_13914316_SNP [dm6]	T	A	3.688e^-4	0.708	UPSTREAM Ance-3 INTERGENIC
2L	12202314	2L_12202314_SNP [dm3] 2L_12202314_SNP [dm6]	G	T	3.689e^-4	0.708	INTRON aret
3L	5337726	3L_5337726_SNP [dm3] 3L_5344626_SNP [dm6]	G	A	3.691e^-4	0.708	SYNONYMOUS_CODING lama	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8064194	2L_8064194_SNP [dm3] 2L_8064194_SNP [dm6]	C	T	3.702e^-4	0.708	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	12157587	2L_12157587_SNP [dm3] 2L_12157587_SNP [dm6]	A	G	3.709e^-4	0.708	INTRON CG31760
2R	19454631	2R_19454631_SNP [dm3] 2R_23567108_SNP [dm6]	C	A	3.709e^-4	0.708	UPSTREAM apt INTRON apt	TF binding site mE1_TFBS_chinmo
2L	11122539	2L_11122539_SNP [dm3] 2L_11122539_SNP [dm6]	T	A	3.710e^-4	0.708	UPSTREAM CG14921 DOWNSTREAM Csl4 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2492699	3L_2492699_SNP [dm3] 3L_2492699_SNP [dm6]	A	G	3.714e^-4	0.708	DOWNSTREAM CG1146 INTRON CG45186
3L	4638576	3L_4638576_SNP [dm3] 3L_4638576_SNP [dm6]	G	A	3.720e^-4	0.708	INTRON axo
2L	9413701	2L_9413701_SNP [dm3] 2L_9413701_SNP [dm6]	C	A	3.723e^-4	0.708	INTRON Shawl
2L	9923310	2L_9923310_SNP [dm3] 2L_9923310_SNP [dm6]	T	A	3.723e^-4	0.708	DOWNSTREAM CG4592 INTRON TbCMF46	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10870935	2L_10870935_SNP [dm3] 2L_10870935_SNP [dm6]	T	A	3.726e^-4	0.708	DOWNSTREAM CG12517 EXON CR45453
3L	9377228	3L_9377228_SNP [dm3] 3L_9384128_SNP [dm6]	A	G	3.727e^-4	0.708	UTR_5_PRIME Hsp27	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	14431735	3L_14431735_SNP [dm3] 3L_14438635_SNP [dm6]	A	T	3.727e^-4	0.708	INTRON bbg	TF binding site mE1_TFBS_inv
3L	17327337	3L_17327337_SNP [dm3] 3L_17334237_SNP [dm6]	C	T	3.728e^-4	0.708	EXON CR44563	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	9316103	2R_9316103_SNP [dm3] 2R_13428598_SNP [dm6]	A	G	3.731e^-4	0.708	INTRON CG42321
2L	16391701	2L_16391701_SNP [dm3] 2L_16391701_SNP [dm6]	T	A	3.737e^-4	0.708	INTERGENIC
3L	6305491	3L_6305491_SNP [dm3] 3L_6312391_SNP [dm6]	C	G	3.738e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	21804373	X_21804373_DEL [dm3] X_22402538_DEL [dm6]	GGCAAGTCTCCCGGCCCTGA...	G	3.748e^-4	0.708	INTERGENIC	transposable element FlyBase
2L	4204840	2L_4204840_SNP [dm3] 2L_4204840_SNP [dm6]	G	C	3.748e^-4	0.708	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3L	16479525	3L_16479525_SNP [dm3] 3L_16486425_SNP [dm6]	C	T	3.749e^-4	0.708	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	13319921	2L_13319921_SNP [dm3] 2L_13319921_SNP [dm6]	G	A	3.755e^-4	0.708	INTRON CG43778	TF binding site mE1_TFBS_HSA
2R	15524317	2R_15524317_SNP [dm3] 2R_19636812_SNP [dm6]	C	T	3.757e^-4	0.708	SYNONYMOUS_CODING CG18367 UPSTREAM mir-4983 & 1 other DOWNSTREAM CG42753	TF binding site mE1_TFBS_cad
2R	13810107	2R_13810107_SNP [dm3] 2R_17922602_SNP [dm6]	G	T	3.761e^-4	0.708	INTRON Elk
2R	12730663	2R_12730663_SNP [dm3] 2R_16843158_SNP [dm6]	C	A	3.762e^-4	0.708	DOWNSTREAM Ugt37c1 INTERGENIC
3R	18113304	3R_18113304_SNP [dm3] 3R_22287582_SNP [dm6]	T	A	3.762e^-4	0.708	INTRON SKIP
2R	15404936	2R_15404936_SNP [dm3] 2R_19517431_SNP [dm6]	G	A	3.765e^-4	0.708	DOWNSTREAM sm INTERGENIC
X	3602309	X_3602309_SNP [dm3] X_3708276_SNP [dm6]	C	G	3.766e^-4	0.708	INTRON Rala
3L	17891617	3L_17891617_SNP [dm3] 3L_17898517_SNP [dm6]	T	A	3.770e^-4	0.708	DOWNSTREAM Prestin INTERGENIC
3L	5290546	3L_5290546_SNP [dm3] 3L_5297446_SNP [dm6]	A	C	3.781e^-4	0.708	INTERGENIC
2L	8080843	2L_8080843_INS [dm3] 2L_8080843_INS [dm6]	T	TG	3.789e^-4	0.708	INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	12267098	2R_12267098_SNP [dm3] 2R_16379593_SNP [dm6]	T	A	3.792e^-4	0.708	UPSTREAM CG43187 EXON CR45316 & 1 other
2R	3765948	2R_3765948_SNP [dm3] 2R_7878443_SNP [dm6]	A	G	3.792e^-4	0.708	INTRON Dgk
3L	7544499	3L_7544499_SNP [dm3] 3L_7551399_SNP [dm6]	A	G	3.795e^-4	0.708	INTERGENIC
X	20969329	X_20969329_SNP [dm3] X_21098302_SNP [dm6]	G	A	3.799e^-4	0.708	INTRON stg1 & 2 others
X	4465692	X_4465692_SNP [dm3] X_4571659_SNP [dm6]	C	T	3.807e^-4	0.708	NON_SYNONYMOUS_CODING CG12684 INTRON CR32773
3L	11549969	3L_11549969_SNP [dm3] 3L_11556869_SNP [dm6]	T	C	3.811e^-4	0.708	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	16934596	2R_16934596_SNP [dm3] 2R_21047091_SNP [dm6]	G	C	3.813e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	4704807	3R_4704807_SNP [dm3] 3R_8879085_SNP [dm6]	G	A	3.817e^-4	0.708	INTRON pyd	TF binding site mE1_TFBS_inv
3R	17901666	3R_17901666_SNP [dm3] 3R_22075944_SNP [dm6]	A	C	3.819e^-4	0.708	INTRON how
3L	14097816	3L_14097816_SNP [dm3] 3L_14104716_SNP [dm6]	T	C	3.819e^-4	0.708	SYNONYMOUS_CODING Sox21a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	19433237	X_19433237_SNP [dm3] X_19539204_SNP [dm6]	G	A	3.825e^-4	0.708	INTRON CG32532
3L	17890954	3L_17890954_SNP [dm3] 3L_17897854_SNP [dm6]	C	T	3.827e^-4	0.708	INTERGENIC
2R	17065217	2R_17065217_SNP [dm3] 2R_21177712_SNP [dm6]	G	T	3.842e^-4	0.708	DOWNSTREAM CG4286 INTRON Pu	TF binding site mE1_TFBS_cad
2L	964512	2L_964512_SNP [dm3] 2L_964512_SNP [dm6]	T	C	3.844e^-4	0.708	INTERGENIC
3R	25465819	3R_25465819_SNP [dm3] 3R_29640097_SNP [dm6]	A	T	3.845e^-4	0.708	INTRON Dop1R2
2R	16684867	2R_16684867_INS [dm3] 2R_20797362_INS [dm6]	A	AA	3.848e^-4	0.708	INTERGENIC	TF binding site mE1_TFBS_cad
2L	20270436	2L_20270436_SNP [dm3] 2L_20270436_SNP [dm6]	C	T	3.853e^-4	0.708	INTERGENIC
3L	11186066	3L_11186066_SNP [dm3] 3L_11192966_SNP [dm6]	A	G	3.858e^-4	0.708	INTRON GlcAT-P
3L	11186079	3L_11186079_SNP [dm3] 3L_11192979_SNP [dm6]	A	G	3.858e^-4	0.708	INTRON GlcAT-P
X	3024740	X_3024740_SNP [dm3] X_3130707_SNP [dm6]	G	A	3.866e^-4	0.708	INTRON kirre	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16932873	2R_16932873_DEL [dm3] 2R_21045368_DEL [dm6]	CG	C	3.873e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5398345	2R_5398345_SNP [dm3] 2R_9510840_SNP [dm6]	T	C	3.874e^-4	0.708	SYNONYMOUS_CODING brp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	18890610	2R_18890610_SNP [dm3] 2R_23003087_SNP [dm6]	G	A	3.875e^-4	0.708	INTRON twi	TF binding site BDTNP1_TFBS_dl
3R	24052222	3R_24052222_SNP [dm3] 3R_28226500_SNP [dm6]	C	T	3.879e^-4	0.708	INTRON CG34354
3R	24054113	3R_24054113_SNP [dm3] 3R_28228391_SNP [dm6]	G	A	3.879e^-4	0.708	INTRON CG34354
3L	14141528	3L_14141528_SNP [dm3] 3L_14148428_SNP [dm6]	A	G	3.884e^-4	0.708	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	7869569	3L_7869569_SNP [dm3] 3L_7876469_SNP [dm6]	T	G	3.886e^-4	0.708	INTRON CG32365
2L	9583087	2L_9583087_SNP [dm3] 2L_9583087_SNP [dm6]	A	T	3.886e^-4	0.708	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	7999830	2L_7999830_SNP [dm3] 2L_7999830_SNP [dm6]	G	T	3.890e^-4	0.708	UTR_3_PRIME Wwox DOWNSTREAM Sirup	TF binding site BDTNP1_TFBS_twi
X	2982273	X_2982273_INS [dm3] X_3088240_INS [dm6]	T	TT	3.890e^-4	0.708	INTRON kirre	TF binding site BDTNP1_TFBS_twi
2L	6848450	2L_6848450_SNP [dm3] 2L_6848450_SNP [dm6]	T	A	3.893e^-4	0.708	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	9351432	3L_9351432_INS [dm3] 3L_9358332_INS [dm6]	C	CTCATGCAA	3.893e^-4	0.708	UPSTREAM UGP & 1 other INTRON UGP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	3602335	X_3602335_SNP [dm3] X_3708302_SNP [dm6]	C	T	3.900e^-4	0.708	INTRON Rala
2L	1365455	2L_1365455_SNP [dm3] 2L_1365455_SNP [dm6]	G	T	3.902e^-4	0.708	INTERGENIC
2R	13040370	2R_13040370_SNP [dm3] 2R_17152865_SNP [dm6]	G	A	3.904e^-4	0.708	INTERGENIC
X	9389180	X_9389180_SNP [dm3] X_9495147_SNP [dm6]	A	T	3.907e^-4	0.708	INTRON mgl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3L	6976075	3L_6976075_SNP [dm3] 3L_6982975_SNP [dm6]	A	G	3.909e^-4	0.708	DOWNSTREAM CG32388 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	5521899	2R_5521899_SNP [dm3] 2R_9634394_SNP [dm6]	A	G	3.910e^-4	0.708	INTRON Mmp2
2L	8099956	2L_8099956_SNP [dm3] 2L_8099956_SNP [dm6]	T	A	3.911e^-4	0.708	INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8099959	2L_8099959_SNP [dm3] 2L_8099959_SNP [dm6]	C	G	3.911e^-4	0.708	INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9923335	2L_9923335_SNP [dm3] 2L_9923335_SNP [dm6]	T	C	3.914e^-4	0.708	DOWNSTREAM CG4592 INTRON TbCMF46	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19068583	2R_19068583_SNP [dm3] 2R_23181060_SNP [dm6]	T	C	3.922e^-4	0.708	INTRON CG34371	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	19752154	X_19752154_SNP [dm3] X_19858121_SNP [dm6]	T	C	3.923e^-4	0.708	SYNONYMOUS_CODING Nup205	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26899515	3R_26899515_SNP [dm3] 3R_31073793_SNP [dm6]	T	G	3.924e^-4	0.708	INTRON Sox100B
2L	11377583	2L_11377583_SNP [dm3] 2L_11377583_SNP [dm6]	G	C	3.928e^-4	0.708	INTERGENIC	regulatory region REDfly_CRMs
2R	17267393	2R_17267393_SNP [dm3] 2R_21379888_SNP [dm6]	A	C	3.932e^-4	0.708	UPSTREAM cv-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	11815227	3R_11815227_SNP [dm3] 3R_15989505_SNP [dm6]	A	G	3.936e^-4	0.708	INTRON srp & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	9816890	2R_9816890_SNP [dm3] 2R_13929385_SNP [dm6]	C	T	3.942e^-4	0.708	INTRON shot
3R	11124589	3R_11124589_SNP [dm3] 3R_15298867_SNP [dm6]	T	A	3.944e^-4	0.708	INTRON Tm1
3L	12641184	3L_12641184_SNP [dm3] 3L_12648084_SNP [dm6]	G	C	3.945e^-4	0.708	DOWNSTREAM CR43431 EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5398349	2R_5398349_SNP [dm3] 2R_9510844_SNP [dm6]	C	T	3.948e^-4	0.708	SYNONYMOUS_CODING brp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	17143729	2R_17143729_SNP [dm3] 2R_21256224_SNP [dm6]	G	T	3.956e^-4	0.708	UTR_5_PRIME Rgk3
2R	17143283	2R_17143283_SNP [dm3] 2R_21255778_SNP [dm6]	A	G	3.958e^-4	0.708	UTR_5_PRIME Rgk3 UPSTREAM Rgk3
3L	2377966	3L_2377966_INS [dm3] 3L_2377966_INS [dm6]	T	TT	3.962e^-4	0.708	UPSTREAM CG15877 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	13984442	2L_13984442_SNP [dm3] 2L_13984442_SNP [dm6]	G	A	3.963e^-4	0.708	SYNONYMOUS_CODING rk	TF binding site mE1_TFBS_chinmo
3L	11843037	3L_11843037_SNP [dm3] 3L_11849937_SNP [dm6]	T	C	3.964e^-4	0.708	DOWNSTREAM CG44837 INTERGENIC
2R	18660344	2R_18660344_SNP [dm3] 2R_22772839_SNP [dm6]	G	A	3.966e^-4	0.708	INTRON CG42260
2R	14959563	2R_14959563_SNP [dm3] 2R_19072058_SNP [dm6]	C	A	3.973e^-4	0.708	INTRON 5-HT1A
3R	14359724	3R_14359724_INS [dm3] 3R_18534002_INS [dm6]	T	TC	3.974e^-4	0.708	INTRON fru
X	3602331	X_3602331_SNP [dm3] X_3708298_SNP [dm6]	T	G	3.978e^-4	0.708	INTRON Rala
3R	10999226	3R_10999226_SNP [dm3] 3R_15173504_SNP [dm6]	G	T	3.981e^-4	0.708	DOWNSTREAM Mf INTRON Mf & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17235172	2R_17235172_SNP [dm3] 2R_21347667_SNP [dm6]	A	T	3.983e^-4	0.708	INTRON CG9822
2L	9924164	2L_9924164_SNP [dm3] 2L_9924164_SNP [dm6]	G	C	3.983e^-4	0.708	SPLICE_SITE_REGION TbCMF46 UPSTREAM CG42366 INTRON TbCMF46	TF binding site mE1_TFBS_cad
3R	24052368	3R_24052368_SNP [dm3] 3R_28226646_SNP [dm6]	T	A	3.985e^-4	0.708	INTRON CG34354
3R	24052398	3R_24052398_SNP [dm3] 3R_28226676_SNP [dm6]	C	T	3.985e^-4	0.708	INTRON CG34354
3R	12665679	3R_12665679_SNP [dm3] 3R_16839957_SNP [dm6]	A	G	3.988e^-4	0.708	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	5557897	X_5557897_INS [dm3] X_5663864_INS [dm6]	A	AAGGGGTA	3.997e^-4	0.708	DOWNSTREAM Sirt4 EXON CR45520
X	2577517	X_2577517_DEL [dm3] X_2683484_DEL [dm6]	TAAAGGTCTGCTT...	T	4.000e^-4	0.708	UPSTREAM CG2652 EXON CR44470
3R	14359721	3R_14359721_SNP [dm3] 3R_18533999_SNP [dm6]	C	A	4.003e^-4	0.708	INTRON fru
3R	21477472	3R_21477472_SNP [dm3] 3R_25651750_SNP [dm6]	T	G	4.009e^-4	0.708	DOWNSTREAM mir-92b INTERGENIC
3L	17876583	3L_17876583_SNP [dm3] 3L_17883483_SNP [dm6]	A	T	4.010e^-4	0.708	UTR_3_PRIME CG7408 DOWNSTREAM CG5506 & 1 other
3L	3547769	3L_3547769_SNP [dm3] 3L_3547769_SNP [dm6]	T	C	4.014e^-4	0.708	INTRON Eip63E
3L	12078040	3L_12078040_SNP [dm3] 3L_12084940_SNP [dm6]	A	T	4.022e^-4	0.708	INTERGENIC	TF binding site mE1_TFBS_kn
X	4415871	X_4415871_SNP [dm3] X_4521838_SNP [dm6]	G	T	4.037e^-4	0.708	INTRON CR32773
3R	17542646	3R_17542646_INS [dm3] 3R_21716924_INS [dm6]	A	AA	4.041e^-4	0.708	INTRON CG31176
2L	3382210	2L_3382210_SNP [dm3] 2L_3382210_SNP [dm6]	T	G	4.043e^-4	0.708	INTERGENIC
3R	14502086	3R_14502086_SNP [dm3] 3R_18676364_SNP [dm6]	T	A	4.045e^-4	0.708	UTR_3_PRIME CG7705 INTRON CG7705
3R	24722965	3R_24722965_SNP [dm3] 3R_28897243_SNP [dm6]	C	T	4.049e^-4	0.708	INTRON Doa
3L	19809159	3L_19809159_DEL [dm3] 3L_19816059_DEL [dm6]	AATATTTAA	A	4.049e^-4	0.708	UPSTREAM cyc DOWNSTREAM Fibp INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17097154	2R_17097154_SNP [dm3] 2R_21209649_SNP [dm6]	A	T	4.050e^-4	0.708	UTR_3_PRIME Glycogenin INTRON CG44245 & 1 other
X	3950504	X_3950504_SNP [dm3] X_4056471_SNP [dm6]	G	A	4.063e^-4	0.708	INTERGENIC
2L	13863006	2L_13863006_SNP [dm3] 2L_13863006_SNP [dm6]	A	C	4.064e^-4	0.708	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	18021721	3L_18021721_SNP [dm3] 3L_18028621_SNP [dm6]	T	C	4.066e^-4	0.708	INTRON Eip75B
3L	16821044	3L_16821044_SNP [dm3] 3L_16827944_SNP [dm6]	A	T	4.073e^-4	0.708	INTRON CG13024	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11237775	2R_11237775_SNP [dm3] 2R_15350270_SNP [dm6]	G	A	4.074e^-4	0.708	UTR_5_PRIME unc-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13917272	2R_13917272_SNP [dm3] 2R_18029767_SNP [dm6]	C	T	4.075e^-4	0.708	INTERGENIC

By genomic position
Variant impact
Gene name

Wing_ACV_Length phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results