DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.943e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.01804

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	6.5989	0.0369

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2269 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	27194404	3R_27194404_SNP [dm3] 3R_31368682_SNP [dm6]	A	C	1.873e^-7	0.336	INTRON CG34347
3L	837662	3L_837662_SNP [dm3] 3L_837662_SNP [dm6]	A	C	7.438e^-7	0.336	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
X	6498248	X_6498248_SNP [dm3] X_6604215_SNP [dm6]	A	C	1.056e^-6	0.336	INTRON pigs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6498249	X_6498249_SNP [dm3] X_6604216_SNP [dm6]	G	A	1.058e^-6	0.336	INTRON pigs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5895763	3R_5895763_SNP [dm3] 3R_10070041_SNP [dm6]	C	A	1.078e^-6	0.336	INTERGENIC
2L	13325482	2L_13325482_SNP [dm3] 2L_13325482_SNP [dm6]	C	A	1.202e^-6	0.336	INTRON CG43778
3L	837739	3L_837739_INS [dm3] 3L_837739_INS [dm6]	T	TA	1.579e^-6	0.336	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3R	14623430	3R_14623430_SNP [dm3] 3R_18797708_SNP [dm6]	A	G	1.729e^-6	0.336	INTERGENIC
3R	5895134	3R_5895134_SNP [dm3] 3R_10069412_SNP [dm6]	C	A	1.861e^-6	0.336	DOWNSTREAM CG33784 INTERGENIC
2R	15839481	2R_15839481_SNP [dm3] 2R_19951976_SNP [dm6]	C	G	1.973e^-6	0.336	DOWNSTREAM CG10822 INTERGENIC
3L	837843	3L_837843_SNP [dm3] 3L_837843_SNP [dm6]	C	T	2.064e^-6	0.336	UPSTREAM CG13887 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3R	14627233	3R_14627233_SNP [dm3] 3R_18801511_SNP [dm6]	A	G	2.234e^-6	0.336	UTR_3_PRIME CG18208
3R	5890647	3R_5890647_SNP [dm3] 3R_10064925_SNP [dm6]	G	C	2.673e^-6	0.336	DOWNSTREAM CG33631 INTERGENIC
2R	15839488	2R_15839488_DEL [dm3] 2R_19951983_DEL [dm6]	GC	G	2.678e^-6	0.336	DOWNSTREAM CG10822 INTERGENIC
3R	8366384	3R_8366384_SNP [dm3] 3R_12540662_SNP [dm6]	C	T	2.685e^-6	0.336	INTRON Octbeta3R
3R	8366380	3R_8366380_SNP [dm3] 3R_12540658_SNP [dm6]	T	C	3.085e^-6	0.361	INTRON Octbeta3R
3R	26927114	3R_26927114_SNP [dm3] 3R_31101392_SNP [dm6]	T	G	3.587e^-6	0.366	UPSTREAM CG15553 INTERGENIC
2L	6412067	2L_6412067_SNP [dm3] 2L_6412067_SNP [dm6]	A	G	3.686e^-6	0.366	UPSTREAM CG13982 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	837721	3L_837721_SNP [dm3] 3L_837721_SNP [dm6]	C	G	3.713e^-6	0.366	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	5165835	2L_5165835_SNP [dm3] 2L_5165835_SNP [dm6]	A	T	4.941e^-6	0.463	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3R	14978386	3R_14978386_SNP [dm3] 3R_19152664_SNP [dm6]	C	T	5.638e^-6	0.49	INTRON CG5835
3R	5910630	3R_5910630_SNP [dm3] 3R_10084908_SNP [dm6]	T	C	6.161e^-6	0.49	INTRON CR45054	TF binding site mE1_TFBS_Trl
2L	4276712	2L_4276712_SNP [dm3] 2L_4276712_SNP [dm6]	C	T	6.173e^-6	0.49	DOWNSTREAM Art2 INTERGENIC
3R	8366406	3R_8366406_SNP [dm3] 3R_12540684_SNP [dm6]	G	A	6.971e^-6	0.49	INTRON Octbeta3R
3R	14627232	3R_14627232_SNP [dm3] 3R_18801510_SNP [dm6]	G	A	7.005e^-6	0.49	UTR_3_PRIME CG18208
3R	14627285	3R_14627285_SNP [dm3] 3R_18801563_SNP [dm6]	C	T	7.294e^-6	0.49	UTR_3_PRIME CG18208
3R	14977420	3R_14977420_SNP [dm3] 3R_19151698_SNP [dm6]	C	A	7.552e^-6	0.49	INTRON CG5835
3L	13637605	3L_13637605_SNP [dm3] 3L_13644505_SNP [dm6]	G	A	7.978e^-6	0.49	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26195343	3R_26195343_SNP [dm3] 3R_30369621_SNP [dm6]	T	A	8.030e^-6	0.49	UTR_3_PRIME hdc
3R	5907797	3R_5907797_SNP [dm3] 3R_10082075_SNP [dm6]	C	T	8.134e^-6	0.49	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	6688251	3L_6688251_INS [dm3] 3L_6695151_INS [dm6]	G	GACGGCTTTGCCG...	8.283e^-6	0.49	INTRON SP1173
3R	14627280	3R_14627280_SNP [dm3] 3R_18801558_SNP [dm6]	G	T	8.496e^-6	0.49	UTR_3_PRIME CG18208
3R	27194423	3R_27194423_SNP [dm3] 3R_31368701_SNP [dm6]	C	G	8.626e^-6	0.49	INTRON CG34347
3R	5882742	3R_5882742_SNP [dm3] 3R_10057020_SNP [dm6]	C	T	9.429e^-6	0.52	UPSTREAM Npc2d INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	5895628	3R_5895628_SNP [dm3] 3R_10069906_SNP [dm6]	C	T	9.795e^-6	0.525	INTERGENIC
3R	5905233	3R_5905233_SNP [dm3] 3R_10079511_SNP [dm6]	C	T	1.056e^-5	0.541	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25576897	3R_25576897_SNP [dm3] 3R_29751175_SNP [dm6]	C	T	1.091e^-5	0.541	SYNONYMOUS_CODING yata	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15838613	2R_15838613_SNP [dm3] 2R_19951108_SNP [dm6]	G	A	1.118e^-5	0.541	UPSTREAM CG10822 INTERGENIC
2L	8613042	2L_8613042_SNP [dm3] 2L_8613042_SNP [dm6]	C	T	1.156e^-5	0.541	INTRON Sema-1a
X	21948890	X_21948890_SNP [dm3] X_22547054_SNP [dm6]	C	G	1.166e^-5	0.541	UPSTREAM CG17601 INTERGENIC
3L	14811233	3L_14811233_SNP [dm3] 3L_14818133_SNP [dm6]	C	T	1.182e^-5	0.541	INTRON CG17839
X	21946768	X_21946768_SNP [dm3] X_22544932_SNP [dm6]	T	C	1.351e^-5	0.583	UPSTREAM CG17599 INTERGENIC
3R	25823547	3R_25823547_SNP [dm3] 3R_29997825_SNP [dm6]	A	C	1.382e^-5	0.583	UPSTREAM CG11504 & 1 other DOWNSTREAM Sas-6 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	5904810	3R_5904810_INS [dm3] 3R_10079088_INS [dm6]	A	ACGGAA	1.390e^-5	0.583	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20161899	2R_20161899_SNP [dm3] 2R_24274376_SNP [dm6]	G	A	1.400e^-5	0.583	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	837603	3L_837603_SNP [dm3] 3L_837603_SNP [dm6]	C	T	1.488e^-5	0.596	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	8611665	2L_8611665_SNP [dm3] 2L_8611665_SNP [dm6]	T	C	1.513e^-5	0.596	INTRON Sema-1a
3R	5893651	3R_5893651_SNP [dm3] 3R_10067929_SNP [dm6]	C	A	1.527e^-5	0.596	SYNONYMOUS_CODING CG33784 DOWNSTREAM CG33783
2R	19703974	2R_19703974_SNP [dm3] 2R_23816451_SNP [dm6]	G	T	1.563e^-5	0.598	INTRON CG4797
3L	837693	3L_837693_SNP [dm3] 3L_837693_SNP [dm6]	A	C	1.626e^-5	0.6	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2R	17276770	2R_17276770_SNP [dm3] 2R_21389265_SNP [dm6]	A	G	1.631e^-5	0.6	UTR_3_PRIME Acox57D-p UPSTREAM Acox57D-d
2L	104249	2L_104249_SNP [dm3] 2L_104249_SNP [dm6]	A	C	1.721e^-5	0.62	UTR_3_PRIME Nhe1 DOWNSTREAM CG11377
2R	14996567	2R_14996567_SNP [dm3] 2R_19109062_SNP [dm6]	T	C	1.762e^-5	0.62	SYNONYMOUS_CODING 5-HT1A
3L	3790252	3L_3790252_SNP [dm3] 3L_3790252_SNP [dm6]	G	A	1.785e^-5	0.62	UPSTREAM CG32266 INTRON CG32264	TF binding site mE1_TFBS_bab1
2L	10207905	2L_10207905_SNP [dm3] 2L_10207905_SNP [dm6]	C	A	1.931e^-5	0.644	UPSTREAM CG5734 & 1 other INTRON CG5731
3R	22435414	3R_22435414_SNP [dm3] 3R_26609692_SNP [dm6]	G	T	1.949e^-5	0.644	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	415143	3L_415143_DEL [dm3] 3L_415143_DEL [dm6]	AA	A	1.971e^-5	0.644	INTERGENIC
3R	25823581	3R_25823581_SNP [dm3] 3R_29997859_SNP [dm6]	A	T	2.008e^-5	0.644	UPSTREAM CG11504 & 1 other DOWNSTREAM Sas-6 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	21199429	3L_21199429_SNP [dm3] 3L_21206329_SNP [dm6]	T	C	2.108e^-5	0.644	SYNONYMOUS_CODING CG10512	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6280663	2R_6280663_SNP [dm3] 2R_10393158_SNP [dm6]	C	T	2.139e^-5	0.644	INTRON CG42732
3L	1740510	3L_1740510_SNP [dm3] 3L_1740510_SNP [dm6]	C	A	2.162e^-5	0.644	INTRON Gk
2R	15839140	2R_15839140_SNP [dm3] 2R_19951635_SNP [dm6]	C	T	2.235e^-5	0.644	SYNONYMOUS_CODING CG10822
3R	5320074	3R_5320074_SNP [dm3] 3R_9494352_SNP [dm6]	C	T	2.251e^-5	0.644	UPSTREAM CG16779 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9875563	3L_9875563_SNP [dm3] 3L_9882463_SNP [dm6]	C	T	2.312e^-5	0.644	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
3L	712399	3L_712399_SNP [dm3] 3L_712399_SNP [dm6]	A	T	2.315e^-5	0.644	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	10378734	2L_10378734_SNP [dm3] 2L_10378734_SNP [dm6]	A	G	2.353e^-5	0.644	SYNONYMOUS_CODING dpr19
3L	711857	3L_711857_SNP [dm3] 3L_711857_SNP [dm6]	A	C	2.380e^-5	0.644	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	14623513	3R_14623513_SNP [dm3] 3R_18797791_SNP [dm6]	T	C	2.423e^-5	0.644	INTERGENIC
3R	14627309	3R_14627309_SNP [dm3] 3R_18801587_SNP [dm6]	A	C	2.470e^-5	0.644	UTR_3_PRIME CG18208
2L	4276703	2L_4276703_SNP [dm3] 2L_4276703_SNP [dm6]	T	C	2.499e^-5	0.644	DOWNSTREAM Art2 INTERGENIC
X	21948498	X_21948498_SNP [dm3] X_22546662_SNP [dm6]	A	G	2.525e^-5	0.644	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_kn
3L	711790	3L_711790_SNP [dm3] 3L_711790_SNP [dm6]	A	T	2.565e^-5	0.644	UTR_5_PRIME CG13896	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	14624053	3R_14624053_SNP [dm3] 3R_18798331_SNP [dm6]	G	A	2.589e^-5	0.644	DOWNSTREAM CG18208 INTERGENIC
2L	21125190	2L_21125190_SNP [dm3] 2L_21125190_SNP [dm6]	C	A	2.661e^-5	0.644	INTRON Nhe2
3R	14627310	3R_14627310_SNP [dm3] 3R_18801588_SNP [dm6]	A	C	2.676e^-5	0.644	UTR_3_PRIME CG18208
2R	15839122	2R_15839122_SNP [dm3] 2R_19951617_SNP [dm6]	G	A	2.852e^-5	0.644	SYNONYMOUS_CODING CG10822
X	21948499	X_21948499_SNP [dm3] X_22546663_SNP [dm6]	C	G	2.952e^-5	0.644	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_kn
3R	14623497	3R_14623497_SNP [dm3] 3R_18797775_SNP [dm6]	A	T	3.000e^-5	0.644	INTERGENIC
3R	5886510	3R_5886510_SNP [dm3] 3R_10060788_SNP [dm6]	C	T	3.046e^-5	0.644	SYNONYMOUS_CODING Npc2c UPSTREAM CR33629 EXON CR45205
3L	712388	3L_712388_DEL [dm3] 3L_712388_DEL [dm6]	AAT	A	3.046e^-5	0.644	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	5165853	2L_5165853_SNP [dm3] 2L_5165853_SNP [dm6]	C	T	3.073e^-5	0.644	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	3473943	3L_3473943_SNP [dm3] 3L_3473943_SNP [dm6]	A	T	3.091e^-5	0.644	INTRON CG42324
3L	413923	3L_413923_SNP [dm3] 3L_413923_SNP [dm6]	A	G	3.108e^-5	0.644	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	20342019	3R_20342019_SNP [dm3] 3R_24516297_SNP [dm6]	G	A	3.139e^-5	0.644	SYNONYMOUS_CODING CG13617	TF binding site mE1_TFBS_chinmo
3R	25823537	3R_25823537_SNP [dm3] 3R_29997815_SNP [dm6]	C	T	3.165e^-5	0.644	UPSTREAM CG11504 & 1 other DOWNSTREAM Sas-6 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	5320110	3R_5320110_SNP [dm3] 3R_9494388_SNP [dm6]	C	A	3.171e^-5	0.644	UPSTREAM CG16779 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11249569	3R_11249569_SNP [dm3] 3R_15423847_SNP [dm6]	G	A	3.248e^-5	0.644	SYNONYMOUS_CODING CG6118	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13204342	X_13204342_SNP [dm3] X_13310309_SNP [dm6]	C	G	3.334e^-5	0.644	INTRON IP3K2
3L	6699506	3L_6699506_SNP [dm3] 3L_6706406_SNP [dm6]	C	T	3.366e^-5	0.644	INTRON CG8519
3R	5910362	3R_5910362_SNP [dm3] 3R_10084640_SNP [dm6]	C	T	3.425e^-5	0.644	INTRON CR45054	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	17277093	2R_17277093_SNP [dm3] 2R_21389588_SNP [dm6]	C	T	3.443e^-5	0.644	SYNONYMOUS_CODING Acox57D-d DOWNSTREAM Acox57D-p
3R	13793925	3R_13793925_SNP [dm3] 3R_17968203_SNP [dm6]	C	T	3.444e^-5	0.644	INTRON cpo
3R	14623556	3R_14623556_SNP [dm3] 3R_18797834_SNP [dm6]	G	A	3.457e^-5	0.644	INTERGENIC
3L	5530524	3L_5530524_SNP [dm3] 3L_5537424_SNP [dm6]	A	T	3.477e^-5	0.644	DOWNSTREAM CG10625 INTERGENIC
2L	5550103	2L_5550103_SNP [dm3] 2L_5550103_SNP [dm6]	A	G	3.483e^-5	0.644	SYNONYMOUS_CODING CG14014 DOWNSTREAM Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25823531	3R_25823531_SNP [dm3] 3R_29997809_SNP [dm6]	G	A	3.525e^-5	0.644	UPSTREAM CG11504 & 1 other DOWNSTREAM Sas-6 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	14812640	3L_14812640_SNP [dm3] 3L_14819540_SNP [dm6]	G	A	3.526e^-5	0.644	INTRON CG17839
2L	104361	2L_104361_SNP [dm3] 2L_104361_SNP [dm6]	T	C	3.531e^-5	0.644	UTR_3_PRIME Nhe1 DOWNSTREAM CG11377
3R	9810936	3R_9810936_SNP [dm3] 3R_13985214_SNP [dm6]	A	T	3.651e^-5	0.644	INTRON rdx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA
3R	25576909	3R_25576909_SNP [dm3] 3R_29751187_SNP [dm6]	T	C	3.667e^-5	0.644	SYNONYMOUS_CODING yata	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25566546	3R_25566546_SNP [dm3] 3R_29740824_SNP [dm6]	C	T	3.695e^-5	0.644	INTRON CG1969
3R	5903128	3R_5903128_SNP [dm3] 3R_10077406_SNP [dm6]	G	C	3.757e^-5	0.644	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	14243560	3L_14243560_SNP [dm3] 3L_14250460_SNP [dm6]	C	T	3.771e^-5	0.644	INTERGENIC
2R	15144490	2R_15144490_SNP [dm3] 2R_19256985_SNP [dm6]	T	A	3.808e^-5	0.644	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
3L	10689860	3L_10689860_SNP [dm3] 3L_10696760_SNP [dm6]	C	T	3.813e^-5	0.644	UTR_5_PRIME NijA
3L	376876	3L_376876_SNP [dm3] 3L_376876_SNP [dm6]	T	A	3.894e^-5	0.644	UTR_5_PRIME trh INTRON trh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
3L	413912	3L_413912_SNP [dm3] 3L_413912_SNP [dm6]	C	T	3.949e^-5	0.644	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	11927648	3L_11927648_SNP [dm3] 3L_11934548_SNP [dm6]	T	C	3.967e^-5	0.644	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13414840	2R_13414840_SNP [dm3] 2R_17527335_SNP [dm6]	G	A	3.967e^-5	0.644	INTRON Patronin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	485706	3L_485706_SNP [dm3] 3L_485706_SNP [dm6]	G	A	4.023e^-5	0.644	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8381114	3R_8381114_SNP [dm3] 3R_12555392_SNP [dm6]	A	G	4.056e^-5	0.644	INTRON Octbeta2R
3L	6005160	3L_6005160_SNP [dm3] 3L_6012060_SNP [dm6]	T	G	4.071e^-5	0.644	INTRON PVRAP
X	21946743	X_21946743_SNP [dm3] X_22544907_SNP [dm6]	C	A	4.097e^-5	0.644	UPSTREAM CG17599 INTERGENIC
X	16985212	X_16985212_SNP [dm3] X_17091179_SNP [dm6]	A	T	4.132e^-5	0.644	UPSTREAM CG16700 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	12972916	3R_12972916_SNP [dm3] 3R_17147194_SNP [dm6]	G	A	4.173e^-5	0.644	SYNONYMOUS_CODING m-cup
3R	12972943	3R_12972943_SNP [dm3] 3R_17147221_SNP [dm6]	A	T	4.173e^-5	0.644	SYNONYMOUS_CODING m-cup
3R	24132771	3R_24132771_SNP [dm3] 3R_28307049_SNP [dm6]	T	A	4.236e^-5	0.644	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	20342166	3R_20342166_SNP [dm3] 3R_24516444_SNP [dm6]	G	A	4.251e^-5	0.644	SYNONYMOUS_CODING CG13617	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9499586	X_9499586_SNP [dm3] X_9605553_SNP [dm6]	T	C	4.313e^-5	0.644	SYNONYMOUS_CODING Lst8 DOWNSTREAM Aats-lys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	15213950	3R_15213950_SNP [dm3] 3R_19388228_SNP [dm6]	G	A	4.345e^-5	0.644	DOWNSTREAM CR34285 INTRON Ino80 & 1 other	TF binding site mE1_TFBS_sens
3R	25576930	3R_25576930_SNP [dm3] 3R_29751208_SNP [dm6]	T	C	4.345e^-5	0.644	SYNONYMOUS_CODING yata	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	21948477	X_21948477_INS [dm3] X_22546641_INS [dm6]	A	AATGTTGTAATAATGAAATA...	4.355e^-5	0.644	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_kn
2R	15839110	2R_15839110_SNP [dm3] 2R_19951605_SNP [dm6]	C	A	4.371e^-5	0.644	SYNONYMOUS_CODING CG10822
2L	709632	2L_709632_SNP [dm3] 2L_709632_SNP [dm6]	G	T	4.373e^-5	0.644	UPSTREAM CR44988 INTRON ds
2R	13414867	2R_13414867_SNP [dm3] 2R_17527362_SNP [dm6]	T	G	4.397e^-5	0.644	INTRON Patronin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25570650	3R_25570650_SNP [dm3] 3R_29744928_SNP [dm6]	C	T	4.422e^-5	0.644	SYNONYMOUS_CODING CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8680415	X_8680415_SNP [dm3] X_8786382_SNP [dm6]	A	T	4.435e^-5	0.644	INTRON Lim1	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	17396078	3R_17396078_SNP [dm3] 3R_21570356_SNP [dm6]	T	C	4.435e^-5	0.644	UTR_3_PRIME InR
3L	712423	3L_712423_SNP [dm3] 3L_712423_SNP [dm6]	G	C	4.508e^-5	0.644	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	1665208	2L_1665208_SNP [dm3] 2L_1665208_SNP [dm6]	C	G	4.509e^-5	0.644	INTRON chinmo
3R	5898424	3R_5898424_DEL [dm3] 3R_10072702_DEL [dm6]	TT	T	4.594e^-5	0.644	SPLICE_SITE_REGION nerfin-2 INTRON nerfin-2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16985562	X_16985562_SNP [dm3] X_17091529_SNP [dm6]	C	A	4.614e^-5	0.644	UPSTREAM CG16700 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	17523706	X_17523706_SNP [dm3] X_17629673_SNP [dm6]	C	G	4.631e^-5	0.644	UPSTREAM CG8326 DOWNSTREAM CG8316 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10786269	3R_10786269_SNP [dm3] 3R_14960547_SNP [dm6]	T	C	4.655e^-5	0.644	INTERGENIC
3R	26329460	3R_26329460_SNP [dm3] 3R_30503738_SNP [dm6]	A	C	4.700e^-5	0.644	NON_SYNONYMOUS_CODING PH4alphaSG1 UPSTREAM CG31371
3R	26329483	3R_26329483_SNP [dm3] 3R_30503761_SNP [dm6]	C	T	4.700e^-5	0.644	SYNONYMOUS_CODING PH4alphaSG1 UPSTREAM CG31371
X	16985197	X_16985197_SNP [dm3] X_17091164_SNP [dm6]	G	A	4.704e^-5	0.644	UPSTREAM CG16700 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4664145	3L_4664145_SNP [dm3] 3L_4664145_SNP [dm6]	G	T	4.793e^-5	0.646	SYNONYMOUS_CODING axo
3R	26898447	3R_26898447_INS [dm3] 3R_31072725_INS [dm6]	C	CATACGCCC	4.794e^-5	0.646	INTRON Sox100B
3R	12972712	3R_12972712_SNP [dm3] 3R_17146990_SNP [dm6]	G	C	4.848e^-5	0.646	SYNONYMOUS_CODING m-cup	TF binding site mE1_TFBS_cad
3L	20888236	3L_20888236_SNP [dm3] 3L_20895136_SNP [dm6]	A	G	4.905e^-5	0.646	INTERGENIC
2L	10378659	2L_10378659_SNP [dm3] 2L_10378659_SNP [dm6]	G	T	4.975e^-5	0.646	SYNONYMOUS_CODING dpr19
2L	20260649	2L_20260649_SNP [dm3] 2L_20260649_SNP [dm6]	A	G	4.981e^-5	0.646	INTERGENIC
2L	20260646	2L_20260646_DEL [dm3] 2L_20260646_DEL [dm6]	TT	T	5.011e^-5	0.646	INTERGENIC
3R	8478837	3R_8478837_SNP [dm3] 3R_12653115_SNP [dm6]	G	T	5.018e^-5	0.646	DOWNSTREAM Dtg INTERGENIC
X	20525273	X_20525273_SNP [dm3] X_20654246_SNP [dm6]	G	A	5.030e^-5	0.646	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20397471	X_20397471_SNP [dm3] X_20526444_SNP [dm6]	G	C	5.127e^-5	0.654	INTERGENIC
3R	20342139	3R_20342139_SNP [dm3] 3R_24516417_SNP [dm6]	C	T	5.190e^-5	0.657	SYNONYMOUS_CODING CG13617	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20397440	X_20397440_SNP [dm3] X_20526413_SNP [dm6]	A	T	5.271e^-5	0.662	INTERGENIC
3L	712337	3L_712337_SNP [dm3] 3L_712337_SNP [dm6]	G	T	5.293e^-5	0.662	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	14288446	3R_14288446_SNP [dm3] 3R_18462724_SNP [dm6]	C	T	5.355e^-5	0.665	INTRON fru
3R	20489343	3R_20489343_SNP [dm3] 3R_24663621_SNP [dm6]	G	A	5.544e^-5	0.672	INTRON slo	regulatory region REDfly_CRMs
2L	5550121	2L_5550121_SNP [dm3] 2L_5550121_SNP [dm6]	A	G	5.550e^-5	0.672	SYNONYMOUS_CODING CG14014 DOWNSTREAM Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	712385	3L_712385_DEL [dm3] 3L_712385_DEL [dm6]	TA	T	5.564e^-5	0.672	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	5372382	3L_5372382_SNP [dm3] 3L_5379282_SNP [dm6]	G	A	5.621e^-5	0.672	SYNONYMOUS_CODING Ir64a DOWNSTREAM CR45743
2R	15842784	2R_15842784_SNP [dm3] 2R_19955279_SNP [dm6]	C	T	5.669e^-5	0.672	UPSTREAM CG44623 DOWNSTREAM CG44622 INTERGENIC
3R	25571102	3R_25571102_SNP [dm3] 3R_29745380_SNP [dm6]	C	T	5.682e^-5	0.672	START_GAINED IntS11 UTR_5_PRIME IntS11 UPSTREAM CG7609	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	14932355	3L_14932355_SNP [dm3] 3L_14939255_SNP [dm6]	C	A	5.706e^-5	0.672	INTRON DCX-EMAP
X	19932654	X_19932654_SNP [dm3] X_20038621_SNP [dm6]	A	T	5.748e^-5	0.672	INTRON Dop2R
3R	13934508	3R_13934508_SNP [dm3] 3R_18108786_SNP [dm6]	A	T	5.773e^-5	0.672	UPSTREAM tRNA:CR31518 DOWNSTREAM tRNA:CR31242 INTRON sr	TF binding site BDTNP1_TFBS_dl
2R	14796431	2R_14796431_SNP [dm3] 2R_18908926_SNP [dm6]	A	C	5.822e^-5	0.672	DOWNSTREAM Vha100-3 INTRON sano
3R	25574619	3R_25574619_SNP [dm3] 3R_29748897_SNP [dm6]	C	T	5.874e^-5	0.672	UTR_5_PRIME ATPsyn-gamma UPSTREAM yata & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	705496	3L_705496_SNP [dm3] 3L_705496_SNP [dm6]	C	G	5.886e^-5	0.672	DOWNSTREAM CG13895 EXON CR44514
3L	5530474	3L_5530474_SNP [dm3] 3L_5537374_SNP [dm6]	C	T	5.903e^-5	0.672	INTERGENIC
3R	25570904	3R_25570904_SNP [dm3] 3R_29745182_SNP [dm6]	G	C	5.962e^-5	0.672	UPSTREAM IntS11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10510524	3L_10510524_SNP [dm3] 3L_10517424_SNP [dm6]	T	C	5.971e^-5	0.672	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	25570881	3R_25570881_SNP [dm3] 3R_29745159_SNP [dm6]	A	T	5.986e^-5	0.672	UPSTREAM IntS11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25577044	3R_25577044_SNP [dm3] 3R_29751322_SNP [dm6]	C	G	6.103e^-5	0.676	SYNONYMOUS_CODING yata	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16780291	3R_16780291_SNP [dm3] 3R_20954569_SNP [dm6]	C	G	6.140e^-5	0.676	INTRON Atpalpha
3R	15967316	3R_15967316_SNP [dm3] 3R_20141594_SNP [dm6]	C	T	6.166e^-5	0.676	INTERGENIC
X	8054020	X_8054020_SNP [dm3] X_8159987_SNP [dm6]	C	G	6.192e^-5	0.676	UPSTREAM CG15337 DOWNSTREAM GIIIspla2 INTERGENIC
X	21112733	X_21112733_SNP [dm3] X_21241706_SNP [dm6]	T	C	6.253e^-5	0.676	INTRON CG32521
3L	9876194	3L_9876194_SNP [dm3] 3L_9883094_SNP [dm6]	C	T	6.334e^-5	0.676	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5506087	3L_5506087_SNP [dm3] 3L_5512987_SNP [dm6]	C	A	6.382e^-5	0.676	UTR_3_PRIME Lkr
3R	25571021	3R_25571021_SNP [dm3] 3R_29745299_SNP [dm6]	G	A	6.391e^-5	0.676	UPSTREAM IntS11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	26936463	3R_26936463_SNP [dm3] 3R_31110741_SNP [dm6]	G	A	6.422e^-5	0.676	INTERGENIC
3L	712343	3L_712343_SNP [dm3] 3L_712343_SNP [dm6]	A	C	6.502e^-5	0.676	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	8054013	X_8054013_SNP [dm3] X_8159980_SNP [dm6]	C	A	6.570e^-5	0.676	UPSTREAM CG15337 DOWNSTREAM GIIIspla2 INTERGENIC
3R	25021122	3R_25021122_SNP [dm3] 3R_29195400_SNP [dm6]	G	A	6.576e^-5	0.676	UPSTREAM CG14509 INTERGENIC
X	8928275	X_8928275_SNP [dm3] X_9034242_SNP [dm6]	C	T	6.628e^-5	0.676	INTRON CR43836 & 1 other
2L	7014162	2L_7014162_SNP [dm3] 2L_7014162_SNP [dm6]	C	T	6.693e^-5	0.676	SYNONYMOUS_CODING CG43322 DOWNSTREAM ade3	TF binding site mE1_TFBS_sens
3R	9771546	3R_9771546_SNP [dm3] 3R_13945824_SNP [dm6]	T	A	6.719e^-5	0.676	UPSTREAM Art6 INTERGENIC
3R	12973327	3R_12973327_SNP [dm3] 3R_17147605_SNP [dm6]	T	C	6.815e^-5	0.676	SYNONYMOUS_CODING m-cup
3R	26362152	3R_26362152_SNP [dm3] 3R_30536430_SNP [dm6]	C	T	6.893e^-5	0.676	INTRON tmod
3R	10830382	3R_10830382_SNP [dm3] 3R_15004660_SNP [dm6]	G	T	6.977e^-5	0.676	EXON CR45599
3L	6879504	3L_6879504_DEL [dm3] 3L_6886404_DEL [dm6]	GG	G	7.088e^-5	0.676	INTERGENIC
3R	25570980	3R_25570980_SNP [dm3] 3R_29745258_SNP [dm6]	T	A	7.101e^-5	0.676	UPSTREAM IntS11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	12492397	3R_12492397_SNP [dm3] 3R_16666675_SNP [dm6]	C	A	7.132e^-5	0.676	INTRON Ubx
2L	10823689	2L_10823689_SNP [dm3] 2L_10823689_SNP [dm6]	A	C	7.168e^-5	0.676	INTRON Nos
2L	10823691	2L_10823691_SNP [dm3] 2L_10823691_SNP [dm6]	C	T	7.168e^-5	0.676	INTRON Nos
3R	26328523	3R_26328523_SNP [dm3] 3R_30502801_SNP [dm6]	G	A	7.288e^-5	0.676	SYNONYMOUS_CODING CG31371 DOWNSTREAM PH4alphaSG1
3L	11967462	3L_11967462_SNP [dm3] 3L_11974362_SNP [dm6]	C	T	7.311e^-5	0.676	UPSTREAM CG42397 & 1 other INTERGENIC
2L	10186728	2L_10186728_SNP [dm3] 2L_10186728_SNP [dm6]	G	A	7.405e^-5	0.676	NON_SYNONYMOUS_CODING Sur
3L	10756244	3L_10756244_SNP [dm3] 3L_10763144_SNP [dm6]	A	G	7.448e^-5	0.676	INTERGENIC
3R	26930988	3R_26930988_SNP [dm3] 3R_31105266_SNP [dm6]	T	C	7.482e^-5	0.676	INTERGENIC
3R	27198071	3R_27198071_SNP [dm3] 3R_31372349_SNP [dm6]	A	T	7.580e^-5	0.676	UPSTREAM gskt DOWNSTREAM CG34347 INTERGENIC
3L	712335	3L_712335_SNP [dm3] 3L_712335_SNP [dm6]	T	A	7.626e^-5	0.676	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	19791786	2R_19791786_DEL [dm3] 2R_23904263_DEL [dm6]	TT	T	7.676e^-5	0.676	DOWNSTREAM Lpt & 1 other INTRON CG13562
2L	14208527	2L_14208527_SNP [dm3] 2L_14208527_SNP [dm6]	T	G	7.676e^-5	0.676	INTRON Dyrk2
3R	2963567	3R_2963567_SNP [dm3] 3R_7137845_SNP [dm6]	C	T	7.707e^-5	0.676	SPLICE_SITE_REGION Fer1 INTRON Fer1	TF binding site BDTNP1_TFBS_prd
3L	6693337	3L_6693337_SNP [dm3] 3L_6700237_SNP [dm6]	A	T	7.745e^-5	0.676	INTRON SP1173
2L	10940439	2L_10940439_SNP [dm3] 2L_10940439_SNP [dm6]	G	A	7.747e^-5	0.676	INTRON dpr2
3L	712455	3L_712455_SNP [dm3] 3L_712455_SNP [dm6]	C	T	7.778e^-5	0.676	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	20925579	3L_20925579_SNP [dm3] 3L_20932479_SNP [dm6]	A	G	7.797e^-5	0.676	INTRON fng	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	18745569	2L_18745569_SNP [dm3] 2L_18745569_SNP [dm6]	G	A	7.872e^-5	0.676	INTERGENIC
2L	16081880	2L_16081880_SNP [dm3] 2L_16081880_SNP [dm6]	C	A	7.909e^-5	0.676	DOWNSTREAM beat-Ia INTERGENIC
2L	4578862	2L_4578862_SNP [dm3] 2L_4578862_SNP [dm6]	G	A	7.909e^-5	0.676	UPSTREAM HP6 INTRON dp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19780905	2L_19780905_SNP [dm3] 2L_19780905_SNP [dm6]	C	A	7.912e^-5	0.676	SYNONYMOUS_CODING CdGAPr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24132729	3R_24132729_SNP [dm3] 3R_28307007_SNP [dm6]	T	A	7.914e^-5	0.676	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	16543557	2R_16543557_SNP [dm3] 2R_20656052_SNP [dm6]	G	A	7.966e^-5	0.676	UPSTREAM CG16799 INTRON Lrt & 1 other
X	7216373	X_7216373_SNP [dm3] X_7322340_SNP [dm6]	A	T	7.989e^-5	0.676	INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	7216824	X_7216824_SNP [dm3] X_7322791_SNP [dm6]	T	G	7.989e^-5	0.676	INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	7216886	X_7216886_SNP [dm3] X_7322853_SNP [dm6]	A	G	7.989e^-5	0.676	INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	7216905	X_7216905_SNP [dm3] X_7322872_SNP [dm6]	G	A	7.989e^-5	0.676	INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	16390710	3R_16390710_SNP [dm3] 3R_20564988_SNP [dm6]	A	T	8.026e^-5	0.676	UPSTREAM CG10877 & 1 other INTRON CG5191	TF binding site mE1_TFBS_cnc
3R	26327986	3R_26327986_SNP [dm3] 3R_30502264_SNP [dm6]	G	A	8.069e^-5	0.676	SPLICE_SITE_REGION CG31371 INTRON CG31371
2L	10940421	2L_10940421_SNP [dm3] 2L_10940421_SNP [dm6]	G	A	8.095e^-5	0.676	INTRON dpr2
2L	6100946	2L_6100946_SNP [dm3] 2L_6100946_SNP [dm6]	G	A	8.160e^-5	0.676	INTRON stai	TF binding site BDTNP1_TFBS_dl
3R	5189176	3R_5189176_SNP [dm3] 3R_9363454_SNP [dm6]	A	T	8.194e^-5	0.676	DOWNSTREAM CG45050 INTRON CG18473
X	7216854	X_7216854_SNP [dm3] X_7322821_SNP [dm6]	C	A	8.196e^-5	0.676	INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15803630	2L_15803630_SNP [dm3] 2L_15803630_SNP [dm6]	G	T	8.214e^-5	0.676	INTERGENIC
3R	9902281	3R_9902281_SNP [dm3] 3R_14076559_SNP [dm6]	T	G	8.279e^-5	0.676	INTRON foxo
3L	712376	3L_712376_SNP [dm3] 3L_712376_SNP [dm6]	G	A	8.438e^-5	0.676	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	6962410	3L_6962410_SNP [dm3] 3L_6969310_SNP [dm6]	C	T	8.460e^-5	0.676	UPSTREAM CG9953 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx
3R	18480610	3R_18480610_SNP [dm3] 3R_22654888_SNP [dm6]	T	C	8.598e^-5	0.676	INTRON CG45058
2R	11605944	2R_11605944_SNP [dm3] 2R_15718439_SNP [dm6]	G	A	8.680e^-5	0.676	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20206705	2R_20206705_SNP [dm3] 2R_24319182_SNP [dm6]	G	A	8.693e^-5	0.676	INTERGENIC
3R	17915932	3R_17915932_SNP [dm3] 3R_22090210_SNP [dm6]	A	C	8.700e^-5	0.676	INTRON CG5778
2L	19788624	2L_19788624_SNP [dm3] 2L_19788624_SNP [dm6]	A	T	8.717e^-5	0.676	INTRON CdGAPr
3L	643553	3L_643553_SNP [dm3] 3L_643553_SNP [dm6]	T	A	8.736e^-5	0.676	EXON CR43334	TF binding site mE1_TFBS_HSA
2R	15839197	2R_15839197_SNP [dm3] 2R_19951692_SNP [dm6]	G	A	8.787e^-5	0.676	SYNONYMOUS_CODING CG10822
2L	20298874	2L_20298874_DEL [dm3] 2L_20298874_DEL [dm6]	TTGGGTCGGAATTGGAGAGA...	T	8.860e^-5	0.676	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	20295924	2L_20295924_SNP [dm3] 2L_20295924_SNP [dm6]	C	T	8.873e^-5	0.676	DOWNSTREAM CG12617 & 1 other INTERGENIC
3R	8379045	3R_8379045_SNP [dm3] 3R_12553323_SNP [dm6]	G	A	8.946e^-5	0.676	INTRON Octbeta2R	TF binding site BDTNP1_TFBS_sna
3L	5530563	3L_5530563_SNP [dm3] 3L_5537463_SNP [dm6]	G	A	8.951e^-5	0.676	DOWNSTREAM CG10625 INTERGENIC
3L	5530484	3L_5530484_SNP [dm3] 3L_5537384_SNP [dm6]	T	A	8.985e^-5	0.676	INTERGENIC
2R	16543558	2R_16543558_SNP [dm3] 2R_20656053_SNP [dm6]	T	C	9.013e^-5	0.676	UPSTREAM CG16799 INTRON Lrt & 1 other
3L	712319	3L_712319_INS [dm3] 3L_712319_INS [dm6]	C	CA	9.048e^-5	0.676	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712342	3L_712342_SNP [dm3] 3L_712342_SNP [dm6]	A	T	9.048e^-5	0.676	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	13325226	2L_13325226_SNP [dm3] 2L_13325226_SNP [dm6]	C	A	9.103e^-5	0.676	INTRON CG43778
3L	9876218	3L_9876218_SNP [dm3] 3L_9883118_SNP [dm6]	T	A	9.160e^-5	0.676	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10677631	2L_10677631_SNP [dm3] 2L_10677631_SNP [dm6]	G	A	9.161e^-5	0.676	UPSTREAM CG17104 INTRON CG17104
3R	14368783	3R_14368783_SNP [dm3] 3R_18543061_SNP [dm6]	A	G	9.177e^-5	0.676	INTRON fru
2L	6575116	2L_6575116_SNP [dm3] 2L_6575116_SNP [dm6]	C	T	9.183e^-5	0.676	SYNONYMOUS_CODING CG11319	TF binding site mE1_TFBS_cad
3R	16143535	3R_16143535_SNP [dm3] 3R_20317813_SNP [dm6]	T	A	9.229e^-5	0.676	UPSTREAM CG42668 INTRON CG42668
3L	712384	3L_712384_SNP [dm3] 3L_712384_SNP [dm6]	T	C	9.270e^-5	0.676	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	21947178	X_21947178_SNP [dm3] X_22545342_SNP [dm6]	A	T	9.346e^-5	0.676	INTERGENIC	transposable element FlyBase
3L	14087358	3L_14087358_SNP [dm3] 3L_14094258_SNP [dm6]	C	T	9.357e^-5	0.676	DOWNSTREAM Fbp1 INTERGENIC
3R	15224421	3R_15224421_SNP [dm3] 3R_19398699_SNP [dm6]	A	G	9.388e^-5	0.676	UPSTREAM CG31244 INTRON Ino80
2R	15107029	2R_15107029_SNP [dm3] 2R_19219524_SNP [dm6]	T	G	9.441e^-5	0.676	INTRON hppy
3R	5892478	3R_5892478_SNP [dm3] 3R_10066756_SNP [dm6]	T	A	9.465e^-5	0.676	UPSTREAM CG33783 INTERGENIC
X	7216405	X_7216405_SNP [dm3] X_7322372_SNP [dm6]	C	T	9.467e^-5	0.676	NON_SYNONYMOUS_CODING Atg5 INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5530567	3L_5530567_SNP [dm3] 3L_5537467_SNP [dm6]	G	A	9.523e^-5	0.676	DOWNSTREAM CG10625 INTERGENIC
3R	26331645	3R_26331645_SNP [dm3] 3R_30505923_SNP [dm6]	T	G	9.526e^-5	0.676	UPSTREAM CG15539 & 2 others INTERGENIC
2L	10940521	2L_10940521_SNP [dm3] 2L_10940521_SNP [dm6]	A	G	9.528e^-5	0.676	INTRON dpr2
3L	14809022	3L_14809022_SNP [dm3] 3L_14815922_SNP [dm6]	A	T	9.584e^-5	0.676	INTRON CG17839
3R	25570656	3R_25570656_SNP [dm3] 3R_29744934_SNP [dm6]	G	A	9.598e^-5	0.676	SYNONYMOUS_CODING CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16306737	2R_16306737_SNP [dm3] 2R_20419232_SNP [dm6]	T	C	9.629e^-5	0.676	INTERGENIC
2L	5165362	2L_5165362_SNP [dm3] 2L_5165362_SNP [dm6]	A	C	9.631e^-5	0.676	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	10940636	2L_10940636_SNP [dm3] 2L_10940636_SNP [dm6]	C	G	9.640e^-5	0.676	INTRON dpr2
2L	7409985	2L_7409985_SNP [dm3] 2L_7409985_SNP [dm6]	A	T	9.662e^-5	0.676	UPSTREAM CG5181 & 1 other INTERGENIC
3R	22651497	3R_22651497_SNP [dm3] 3R_26825775_SNP [dm6]	C	T	9.716e^-5	0.676	INTRON Tl
2L	3365144	2L_3365144_SNP [dm3] 2L_3365144_SNP [dm6]	A	G	9.758e^-5	0.676	UTR_5_PRIME CG34394 INTRON CG34394
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	9.777e^-5	0.676	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10677630	2L_10677630_SNP [dm3] 2L_10677630_SNP [dm6]	A	T	9.879e^-5	0.676	UPSTREAM CG17104 INTRON CG17104
X	21947603	X_21947603_SNP [dm3] X_22545767_SNP [dm6]	A	T	1.010e^-4	0.676	INTERGENIC	transposable element FlyBase
2L	5165363	2L_5165363_SNP [dm3] 2L_5165363_SNP [dm6]	T	A	1.023e^-4	0.676	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	8931773	2L_8931773_SNP [dm3] 2L_8931773_SNP [dm6]	C	T	1.037e^-4	0.676	SYNONYMOUS_CODING CG34398 INTRON CG34398
2L	6100997	2L_6100997_SNP [dm3] 2L_6100997_SNP [dm6]	A	T	1.041e^-4	0.676	INTRON stai	TF binding site BDTNP1_TFBS_dl
3R	27002250	3R_27002250_SNP [dm3] 3R_31176528_SNP [dm6]	A	C	1.042e^-4	0.676	INTRON Gycbeta100B
3R	16230105	3R_16230105_SNP [dm3] 3R_20404383_SNP [dm6]	G	A	1.046e^-4	0.676	INTRON Gfrl
3R	5188749	3R_5188749_DEL [dm3] 3R_9363027_DEL [dm6]	GTGAATATATTATTAAGTGT...	G	1.048e^-4	0.676	UPSTREAM CG18473 DOWNSTREAM CG45050 INTERGENIC
3L	712377	3L_712377_SNP [dm3] 3L_712377_SNP [dm6]	A	C	1.064e^-4	0.676	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	13962805	2L_13962805_SNP [dm3] 2L_13962805_SNP [dm6]	T	C	1.064e^-4	0.676	UTR_3_PRIME NimA UPSTREAM NimB1
3R	5320073	3R_5320073_SNP [dm3] 3R_9494351_SNP [dm6]	C	G	1.068e^-4	0.676	UPSTREAM CG16779 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	5320100	3R_5320100_DEL [dm3] 3R_9494378_DEL [dm6]	AACCCGAAA	A	1.070e^-4	0.676	UPSTREAM CG16779 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	5898675	3R_5898675_SNP [dm3] 3R_10072953_SNP [dm6]	A	G	1.074e^-4	0.676	DOWNSTREAM CG5361 INTRON nerfin-2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11945188	3R_11945188_SNP [dm3] 3R_16119466_SNP [dm6]	C	G	1.074e^-4	0.676	INTRON Sb
2R	11217953	2R_11217953_SNP [dm3] 2R_15330448_SNP [dm6]	G	T	1.078e^-4	0.676	UPSTREAM Hr51 EXON CR44371	TF binding site BDTNP1_TFBS_dl
2L	103074	2L_103074_SNP [dm3] 2L_103074_SNP [dm6]	C	T	1.082e^-4	0.676	NON_SYNONYMOUS_CODING CG11377 DOWNSTREAM Zir & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	103619	2L_103619_SNP [dm3] 2L_103619_SNP [dm6]	T	C	1.082e^-4	0.676	SYNONYMOUS_CODING CG11377 DOWNSTREAM Nhe1 INTRON CG11377
2L	114577	2L_114577_SNP [dm3] 2L_114577_SNP [dm6]	C	T	1.082e^-4	0.676	UPSTREAM CG11455 DOWNSTREAM Sam-S & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	114763	2L_114763_SNP [dm3] 2L_114763_SNP [dm6]	A	G	1.082e^-4	0.676	UTR_5_PRIME CG11455 DOWNSTREAM Sam-S & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	115686	2L_115686_SNP [dm3] 2L_115686_SNP [dm6]	A	T	1.082e^-4	0.676	UTR_3_PRIME CG13694 INTRON CG11455	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12972958	3R_12972958_SNP [dm3] 3R_17147236_SNP [dm6]	C	T	1.083e^-4	0.676	SYNONYMOUS_CODING m-cup
3R	16256705	3R_16256705_SNP [dm3] 3R_20430983_SNP [dm6]	G	T	1.087e^-4	0.676	INTRON Gfrl
X	9499442	X_9499442_SNP [dm3] X_9605409_SNP [dm6]	C	T	1.089e^-4	0.676	SYNONYMOUS_CODING Lst8 DOWNSTREAM Aats-lys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	5530465	3L_5530465_SNP [dm3] 3L_5537365_SNP [dm6]	A	T	1.091e^-4	0.676	INTERGENIC
3L	5530467	3L_5530467_SNP [dm3] 3L_5537367_SNP [dm6]	G	A	1.091e^-4	0.676	INTERGENIC
2L	6101662	2L_6101662_SNP [dm3] 2L_6101662_SNP [dm6]	C	A	1.092e^-4	0.676	INTRON stai
3R	16256675	3R_16256675_INS [dm3] 3R_20430953_INS [dm6]	G	GTGTGTG	1.096e^-4	0.676	INTRON Gfrl
3R	25151249	3R_25151249_SNP [dm3] 3R_29325527_SNP [dm6]	T	G	1.100e^-4	0.676	INTERGENIC
2L	14209561	2L_14209561_SNP [dm3] 2L_14209561_SNP [dm6]	C	T	1.103e^-4	0.676	INTRON Dyrk2
3R	20342327	3R_20342327_SNP [dm3] 3R_24516605_SNP [dm6]	C	T	1.104e^-4	0.676	SYNONYMOUS_CODING CG13617	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	112551	2L_112551_SNP [dm3] 2L_112551_SNP [dm6]	T	A	1.106e^-4	0.676	INTRON Sam-S
3R	27506287	3R_27506287_SNP [dm3] 3R_31680565_SNP [dm6]	C	T	1.107e^-4	0.676	UPSTREAM CG11550 DOWNSTREAM CR44091 INTERGENIC
3R	21462170	3R_21462170_INS [dm3] 3R_25636448_INS [dm6]	G	GGCTCCG	1.117e^-4	0.676	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	27165823	3R_27165823_SNP [dm3] 3R_31340101_SNP [dm6]	G	A	1.118e^-4	0.676	INTRON CG34347
2R	20161833	2R_20161833_SNP [dm3] 2R_24274310_SNP [dm6]	C	T	1.120e^-4	0.676	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	12846073	3L_12846073_SNP [dm3] 3L_12852973_SNP [dm6]	G	T	1.124e^-4	0.676	UTR_3_PRIME Wbp2 UPSTREAM Ent3 DOWNSTREAM Wbp2
3L	413373	3L_413373_SNP [dm3] 3L_413373_SNP [dm6]	G	A	1.129e^-4	0.676	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	98490	2L_98490_SNP [dm3] 2L_98490_SNP [dm6]	A	C	1.131e^-4	0.676	INTRON Zir
2L	99184	2L_99184_SNP [dm3] 2L_99184_SNP [dm6]	T	C	1.131e^-4	0.676	NON_SYNONYMOUS_CODING Zir	TF binding site mE1_TFBS_HSA
2L	20284259	2L_20284259_INS [dm3] 2L_20284259_INS [dm6]	T	CTA	1.133e^-4	0.676	INTERGENIC
X	5291698	X_5291698_SNP [dm3] X_5397665_SNP [dm6]	T	A	1.137e^-4	0.676	DOWNSTREAM SK INTRON SK
3R	16290391	3R_16290391_INS [dm3] 3R_20464669_INS [dm6]	A	ATATCTTCACCA...	1.138e^-4	0.676	INTRON Gfrl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	1027546	2L_1027546_INS [dm3] 2L_1027546_INS [dm6]	G	GG	1.147e^-4	0.676	UPSTREAM CG4375 INTRON IA-2
2L	98910	2L_98910_SNP [dm3] 2L_98910_SNP [dm6]	G	T	1.148e^-4	0.676	SYNONYMOUS_CODING Zir
3L	712374	3L_712374_SNP [dm3] 3L_712374_SNP [dm6]	G	C	1.151e^-4	0.676	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	20342127	3R_20342127_SNP [dm3] 3R_24516405_SNP [dm6]	C	T	1.153e^-4	0.676	SYNONYMOUS_CODING CG13617	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	103512	2L_103512_SNP [dm3] 2L_103512_SNP [dm6]	T	A	1.153e^-4	0.676	DOWNSTREAM Nhe1 INTRON CG11377
2L	21091987	2L_21091987_SNP [dm3] 2L_21091987_SNP [dm6]	T	A	1.154e^-4	0.676	DOWNSTREAM CG9259 INTRON CG14397
2L	8931764	2L_8931764_SNP [dm3] 2L_8931764_SNP [dm6]	A	C	1.160e^-4	0.676	SYNONYMOUS_CODING CG34398 INTRON CG34398
X	5662576	X_5662576_SNP [dm3] X_5768543_SNP [dm6]	T	G	1.170e^-4	0.676	INTRON CG42699 & 1 other
3R	26919436	3R_26919436_SNP [dm3] 3R_31093714_SNP [dm6]	G	C	1.180e^-4	0.676	INTRON CG11317
3L	11912371	3L_11912371_SNP [dm3] 3L_11919271_SNP [dm6]	T	A	1.182e^-4	0.676	INTRON CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8770534	2L_8770534_SNP [dm3] 2L_8770534_SNP [dm6]	T	A	1.185e^-4	0.676	SYNONYMOUS_CODING CG9465	TF binding site mE1_TFBS_sens
2L	8770540	2L_8770540_SNP [dm3] 2L_8770540_SNP [dm6]	T	G	1.185e^-4	0.676	SYNONYMOUS_CODING CG9465	TF binding site mE1_TFBS_sens
X	7609576	X_7609576_SNP [dm3] X_7715543_SNP [dm6]	A	T	1.187e^-4	0.676	UPSTREAM CG15478 INTRON CG15478
3R	5893484	3R_5893484_SNP [dm3] 3R_10067762_SNP [dm6]	A	C	1.189e^-4	0.676	UPSTREAM CG33784 DOWNSTREAM CG33783 INTERGENIC
X	7609585	X_7609585_SNP [dm3] X_7715552_SNP [dm6]	T	C	1.191e^-4	0.676	UPSTREAM CG15478 INTRON CG15478
2R	17276813	2R_17276813_SNP [dm3] 2R_21389308_SNP [dm6]	G	A	1.198e^-4	0.676	UPSTREAM Acox57D-d DOWNSTREAM Acox57D-p INTERGENIC
3R	25562975	3R_25562975_SNP [dm3] 3R_29737253_SNP [dm6]	A	G	1.201e^-4	0.676	SYNONYMOUS_CODING CG7598 UPSTREAM CG7601	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Ubx
3L	712235	3L_712235_SNP [dm3] 3L_712235_SNP [dm6]	C	T	1.210e^-4	0.676	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	12972880	3R_12972880_SNP [dm3] 3R_17147158_SNP [dm6]	C	A	1.210e^-4	0.676	SYNONYMOUS_CODING m-cup
2L	114980	2L_114980_SNP [dm3] 2L_114980_SNP [dm6]	A	T	1.221e^-4	0.676	UTR_5_PRIME CG11455 DOWNSTREAM Sam-S & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6962517	3L_6962517_SNP [dm3] 3L_6969417_SNP [dm6]	T	A	1.221e^-4	0.676	UPSTREAM CG9953 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx
3R	22651486	3R_22651486_SNP [dm3] 3R_26825764_SNP [dm6]	T	A	1.222e^-4	0.676	INTRON Tl
3L	712323	3L_712323_SNP [dm3] 3L_712323_SNP [dm6]	T	A	1.224e^-4	0.676	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	11945189	3R_11945189_SNP [dm3] 3R_16119467_SNP [dm6]	C	A	1.225e^-4	0.676	INTRON Sb
3R	26329279	3R_26329279_SNP [dm3] 3R_30503557_SNP [dm6]	T	C	1.230e^-4	0.676	UPSTREAM CG31371 DOWNSTREAM PH4alphaSG1 INTERGENIC
2L	103791	2L_103791_SNP [dm3] 2L_103791_SNP [dm6]	C	T	1.232e^-4	0.676	UTR_3_PRIME CG11377 DOWNSTREAM Nhe1 INTRON CG11377
3L	12571356	3L_12571356_SNP [dm3] 3L_12578256_SNP [dm6]	C	T	1.234e^-4	0.676	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26924596	3R_26924596_SNP [dm3] 3R_31098874_SNP [dm6]	C	A	1.238e^-4	0.676	UTR_3_PRIME CG15553	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	114769	2L_114769_SNP [dm3] 2L_114769_SNP [dm6]	A	T	1.238e^-4	0.676	UTR_5_PRIME CG11455 DOWNSTREAM Sam-S & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
X	7620883	X_7620883_SNP [dm3] X_7726850_SNP [dm6]	G	A	1.241e^-4	0.676	SYNONYMOUS_CODING NELF-B DOWNSTREAM Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6981624	2L_6981624_SNP [dm3] 2L_6981624_SNP [dm6]	T	C	1.248e^-4	0.676	SYNONYMOUS_CODING uif	TF binding site mE1_TFBS_cad
3R	21891631	3R_21891631_SNP [dm3] 3R_26065909_SNP [dm6]	T	A	1.248e^-4	0.676	INTERGENIC
3R	12972871	3R_12972871_SNP [dm3] 3R_17147149_SNP [dm6]	C	T	1.249e^-4	0.676	SYNONYMOUS_CODING m-cup
X	14778005	X_14778005_SNP [dm3] X_14883972_SNP [dm6]	A	G	1.250e^-4	0.676	INTRON Flo2
2L	10823709	2L_10823709_SNP [dm3] 2L_10823709_SNP [dm6]	A	T	1.253e^-4	0.676	INTRON Nos
3L	5506129	3L_5506129_SNP [dm3] 3L_5513029_SNP [dm6]	A	G	1.253e^-4	0.676	UTR_3_PRIME Lkr
3R	13272898	3R_13272898_SNP [dm3] 3R_17447176_SNP [dm6]	A	G	1.255e^-4	0.676	DOWNSTREAM CG5873 INTRON Eh
2L	10787364	2L_10787364_DEL [dm3] 2L_10787364_DEL [dm6]	ACCATGTGCTTCGCACATA...	A	1.256e^-4	0.676	INTRON CG31869
2L	10787384	2L_10787384_SNP [dm3] 2L_10787384_SNP [dm6]	C	G	1.256e^-4	0.676	INTRON CG31869
3R	19643459	3R_19643459_SNP [dm3] 3R_23817737_SNP [dm6]	A	G	1.262e^-4	0.676	INTRON CG34355 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14834277	3L_14834277_SNP [dm3] 3L_14841177_SNP [dm6]	T	A	1.262e^-4	0.676	INTRON CG17839
3L	5369836	3L_5369836_SNP [dm3] 3L_5376736_SNP [dm6]	C	T	1.276e^-4	0.676	INTERGENIC
2L	8769616	2L_8769616_SNP [dm3] 2L_8769616_SNP [dm6]	G	C	1.277e^-4	0.676	SYNONYMOUS_CODING CG9465 UPSTREAM CG9463
X	6683309	X_6683309_SNP [dm3] X_6789276_SNP [dm6]	C	A	1.278e^-4	0.676	INTRON C3G
3R	25570756	3R_25570756_SNP [dm3] 3R_29745034_SNP [dm6]	A	C	1.283e^-4	0.676	START_GAINED CG7609 UTR_5_PRIME CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10787426	2L_10787426_SNP [dm3] 2L_10787426_SNP [dm6]	G	A	1.286e^-4	0.676	INTRON CG31869
2L	11114293	2L_11114293_SNP [dm3] 2L_11114293_SNP [dm6]	C	T	1.290e^-4	0.676	SYNONYMOUS_CODING Gr32a	TF binding site mE1_TFBS_cad
3L	7480629	3L_7480629_SNP [dm3] 3L_7487529_SNP [dm6]	C	T	1.290e^-4	0.676	INTRON mthl6
3L	6928239	3L_6928239_SNP [dm3] 3L_6935139_SNP [dm6]	T	A	1.296e^-4	0.676	DOWNSTREAM CR45415 & 1 other INTERGENIC
3R	5761722	3R_5761722_SNP [dm3] 3R_9936000_SNP [dm6]	T	A	1.299e^-4	0.676	INTRON Glut4EF	TF binding site mE1_TFBS_chinmo
3R	23587733	3R_23587733_SNP [dm3] 3R_27762011_SNP [dm6]	A	G	1.299e^-4	0.676	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	15027231	3L_15027231_SNP [dm3] 3L_15034131_SNP [dm6]	G	C	1.299e^-4	0.676	START_GAINED Sytbeta UTR_5_PRIME Sytbeta INTRON Sytbeta
2L	116354	2L_116354_SNP [dm3] 2L_116354_SNP [dm6]	A	C	1.300e^-4	0.676	UTR_5_PRIME CG13694 UPSTREAM CG13694 DOWNSTREAM CG4822 INTRON CG11455	TF binding site BDTNP1_TFBS_sna
3L	5530483	3L_5530483_SNP [dm3] 3L_5537383_SNP [dm6]	A	G	1.303e^-4	0.676	INTERGENIC
2L	22144346	2L_22144346_INS [dm3] 2L_22144346_INS [dm6]	G	GCTGTG	1.306e^-4	0.676	INTRON CG42748	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	411916	3L_411916_SNP [dm3] 3L_411916_SNP [dm6]	A	G	1.306e^-4	0.676	INTERGENIC
3R	21673753	3R_21673753_SNP [dm3] 3R_25848031_SNP [dm6]	T	G	1.311e^-4	0.677	UPSTREAM CR45657 & 1 other DOWNSTREAM CR45655 INTERGENIC
3R	25571687	3R_25571687_SNP [dm3] 3R_29745965_SNP [dm6]	C	T	1.315e^-4	0.677	SYNONYMOUS_CODING IntS11 UPSTREAM CG7609	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16952034	2R_16952034_SNP [dm3] 2R_21064529_SNP [dm6]	C	T	1.320e^-4	0.678	SYNONYMOUS_CODING Cht12 DOWNSTREAM Cht4
X	13126612	X_13126612_SNP [dm3] X_13232579_SNP [dm6]	G	T	1.324e^-4	0.678	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5971481	3R_5971481_INS [dm3] 3R_10145759_INS [dm6]	T	TCA	1.329e^-4	0.679	INTRON Invadolysin	TF binding site BDTNP1_TFBS_dl
3L	11927532	3L_11927532_SNP [dm3] 3L_11934432_SNP [dm6]	G	T	1.334e^-4	0.68	SYNONYMOUS_CODING byn INTRON CG44837	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	836478	3L_836478_SNP [dm3] 3L_836478_SNP [dm6]	T	C	1.339e^-4	0.68	SYNONYMOUS_CODING CG42554 DOWNSTREAM CG42553 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	5216647	3L_5216647_SNP [dm3] 3L_5223547_SNP [dm6]	A	G	1.346e^-4	0.68	INTRON shep
2L	14122364	2L_14122364_DEL [dm3] 2L_14122364_DEL [dm6]	CATTTTAATTCGTGTC...	C	1.347e^-4	0.68	INTERGENIC
2L	19797389	2L_19797389_SNP [dm3] 2L_19797389_SNP [dm6]	T	C	1.349e^-4	0.68	INTRON sick
2L	20268650	2L_20268650_SNP [dm3] 2L_20268650_SNP [dm6]	C	A	1.356e^-4	0.68	INTERGENIC
3R	22435344	3R_22435344_SNP [dm3] 3R_26609622_SNP [dm6]	A	C	1.356e^-4	0.68	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	20294038	2L_20294038_SNP [dm3] 2L_20294038_SNP [dm6]	A	G	1.360e^-4	0.68	UPSTREAM CG12617 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	21153957	3L_21153957_SNP [dm3] 3L_21160857_SNP [dm6]	A	T	1.369e^-4	0.68	UTR_5_PRIME Ac78C
3L	4078783	3L_4078783_SNP [dm3] 3L_4078783_SNP [dm6]	T	G	1.384e^-4	0.68	NON_SYNONYMOUS_CODING Gad1
3R	25405876	3R_25405876_SNP [dm3] 3R_29580154_SNP [dm6]	A	G	1.385e^-4	0.68	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	5858670	2L_5858670_SNP [dm3] 2L_5858670_SNP [dm6]	T	C	1.387e^-4	0.68	INTERGENIC
3L	1740428	3L_1740428_SNP [dm3] 3L_1740428_SNP [dm6]	A	G	1.391e^-4	0.68	INTRON Gk
3R	26921889	3R_26921889_SNP [dm3] 3R_31096167_SNP [dm6]	C	A	1.396e^-4	0.68	INTRON CG11317
X	21947679	X_21947679_SNP [dm3] X_22545843_SNP [dm6]	A	T	1.399e^-4	0.68	INTERGENIC
3R	19747119	3R_19747119_SNP [dm3] 3R_23921397_SNP [dm6]	C	G	1.407e^-4	0.68	INTRON sba	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5511194	2L_5511194_SNP [dm3] 2L_5511194_SNP [dm6]	A	C	1.409e^-4	0.68	INTERGENIC
2R	13414691	2R_13414691_SNP [dm3] 2R_17527186_SNP [dm6]	A	C	1.410e^-4	0.68	INTRON Patronin
X	16402532	X_16402532_SNP [dm3] X_16508499_SNP [dm6]	T	C	1.412e^-4	0.68	INTRON para
3R	15276929	3R_15276929_SNP [dm3] 3R_19451207_SNP [dm6]	A	G	1.413e^-4	0.68	INTRON CG31221
X	3524586	X_3524586_SNP [dm3] X_3630553_SNP [dm6]	T	A	1.414e^-4	0.68	INTRON AstA-R1	TF binding site BDTNP1_TFBS_twi
3R	15214334	3R_15214334_SNP [dm3] 3R_19388612_SNP [dm6]	T	C	1.414e^-4	0.68	SYNONYMOUS_CODING CG3734 INTRON Ino80	TF binding site mE1_TFBS_sens
2R	15897808	2R_15897808_SNP [dm3] 2R_20010303_SNP [dm6]	G	C	1.415e^-4	0.68	INTERGENIC
3L	15943338	3L_15943338_SNP [dm3] 3L_15950238_SNP [dm6]	T	C	1.425e^-4	0.682	INTRON Pka-C3
X	19012009	X_19012009_SNP [dm3] X_19117976_SNP [dm6]	A	G	1.431e^-4	0.682	INTERGENIC
2L	10241088	2L_10241088_SNP [dm3] 2L_10241088_SNP [dm6]	A	G	1.440e^-4	0.682	INTRON me31B	TF binding site mE1_TFBS_sens
2L	12867587	2L_12867587_SNP [dm3] 2L_12867587_SNP [dm6]	C	T	1.447e^-4	0.682	INTERGENIC
3R	26331639	3R_26331639_SNP [dm3] 3R_30505917_SNP [dm6]	A	C	1.447e^-4	0.682	UPSTREAM CG15539 & 2 others INTERGENIC
3R	25567563	3R_25567563_SNP [dm3] 3R_29741841_SNP [dm6]	A	C	1.454e^-4	0.682	UTR_3_PRIME CG1969 DOWNSTREAM CG7609
3R	25570751	3R_25570751_SNP [dm3] 3R_29745029_SNP [dm6]	A	C	1.454e^-4	0.682	START_GAINED CG7609 UTR_5_PRIME CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	712348	3L_712348_SNP [dm3] 3L_712348_SNP [dm6]	G	T	1.458e^-4	0.682	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	15838910	2R_15838910_SNP [dm3] 2R_19951405_SNP [dm6]	T	A	1.460e^-4	0.682	UTR_5_PRIME CG10822
3R	5320121	3R_5320121_SNP [dm3] 3R_9494399_SNP [dm6]	G	A	1.463e^-4	0.682	UPSTREAM CG16779 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1312145	2L_1312145_SNP [dm3] 2L_1312145_SNP [dm6]	C	T	1.466e^-4	0.682	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	14324339	2R_14324339_SNP [dm3] 2R_18436834_SNP [dm6]	T	G	1.468e^-4	0.682	INTRON CG30118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	4545925	3L_4545925_SNP [dm3] 3L_4545925_SNP [dm6]	C	A	1.469e^-4	0.682	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6694902	3L_6694902_INS [dm3] 3L_6701802_INS [dm6]	A	AA	1.480e^-4	0.682	INTRON SP1173
X	14373244	X_14373244_SNP [dm3] X_14479211_SNP [dm6]	G	A	1.485e^-4	0.682	INTRON CG9411
3L	6962660	3L_6962660_SNP [dm3] 3L_6969560_SNP [dm6]	A	G	1.486e^-4	0.682	UPSTREAM CG9953 & 1 other INTERGENIC	TF binding site mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx
X	20527420	X_20527420_DEL [dm3] X_20656393_DEL [dm6]	TC	T	1.489e^-4	0.682	UPSTREAM Cyp6v1 DOWNSTREAM CR45466 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	12631188	2R_12631188_SNP [dm3] 2R_16743683_SNP [dm6]	C	A	1.489e^-4	0.682	DOWNSTREAM Sfp53D INTERGENIC
3R	16256687	3R_16256687_SNP [dm3] 3R_20430965_SNP [dm6]	T	G	1.500e^-4	0.682	INTRON Gfrl
3R	15214342	3R_15214342_SNP [dm3] 3R_19388620_SNP [dm6]	T	G	1.506e^-4	0.682	NON_SYNONYMOUS_CODING CG3734 INTRON Ino80	TF binding site mE1_TFBS_sens
2R	16087329	2R_16087329_SNP [dm3] 2R_20199824_SNP [dm6]	A	T	1.506e^-4	0.682	INTERGENIC
3R	25562933	3R_25562933_SNP [dm3] 3R_29737211_SNP [dm6]	C	A	1.510e^-4	0.682	SYNONYMOUS_CODING CG7598 UPSTREAM CG7601	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Ubx
3L	837029	3L_837029_SNP [dm3] 3L_837029_SNP [dm6]	A	G	1.514e^-4	0.682	SYNONYMOUS_CODING CG13901 UPSTREAM CG13887 DOWNSTREAM CG42554	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
3R	17137363	3R_17137363_SNP [dm3] 3R_21311641_SNP [dm6]	T	A	1.515e^-4	0.682	DOWNSTREAM Hsromega EXON Hsromega
3R	24444129	3R_24444129_SNP [dm3] 3R_28618407_SNP [dm6]	C	T	1.518e^-4	0.682	INTRON CG10011
X	5462305	X_5462305_INS [dm3] X_5568272_INS [dm6]	A	ACACA	1.520e^-4	0.682	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	7593284	3L_7593284_SNP [dm3] 3L_7600184_SNP [dm6]	A	T	1.528e^-4	0.682	INTRON CG33275
3R	5895909	3R_5895909_DEL [dm3] 3R_10070187_DEL [dm6]	TCCAACGT	T	1.529e^-4	0.682	UPSTREAM nerfin-2 INTERGENIC
2R	6016861	2R_6016861_SNP [dm3] 2R_10129356_SNP [dm6]	T	G	1.529e^-4	0.682	INTRON gem
2L	112460	2L_112460_SNP [dm3] 2L_112460_SNP [dm6]	T	C	1.533e^-4	0.682	INTRON Sam-S
2L	10236850	2L_10236850_SNP [dm3] 2L_10236850_SNP [dm6]	G	A	1.534e^-4	0.682	INTRON mthl15	TF binding site BDTNP1_TFBS_twi
3L	5503175	3L_5503175_SNP [dm3] 3L_5510075_SNP [dm6]	G	T	1.541e^-4	0.682	INTRON CG34342
X	20942902	X_20942902_DEL [dm3] X_21071875_DEL [dm6]	TTTTTGT	T	1.547e^-4	0.682	INTRON bves	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5216572	3L_5216572_DEL [dm3] 3L_5223472_DEL [dm6]	GGCGGAATATATAGACAAGG...	G	1.549e^-4	0.682	INTRON shep
X	20396950	X_20396950_SNP [dm3] X_20525923_SNP [dm6]	C	A	1.550e^-4	0.682	UPSTREAM Tak1 INTERGENIC	transposable element FlyBase
2L	112337	2L_112337_INS [dm3] 2L_112337_INS [dm6]	A	ACCA	1.552e^-4	0.682	INTRON Sam-S
3L	11922705	3L_11922705_SNP [dm3] 3L_11929605_SNP [dm6]	T	A	1.553e^-4	0.682	INTRON CG44837 & 1 other
3R	16256787	3R_16256787_SNP [dm3] 3R_20431065_SNP [dm6]	A	G	1.571e^-4	0.687	INTRON Gfrl
2R	12993899	2R_12993899_SNP [dm3] 2R_17106394_SNP [dm6]	T	C	1.572e^-4	0.687	INTRON CG30456	TF binding site mE1_TFBS_cad
3L	711035	3L_711035_SNP [dm3] 3L_711035_SNP [dm6]	A	G	1.581e^-4	0.688	SYNONYMOUS_CODING CG13896 UPSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2R	20054218	2R_20054218_SNP [dm3] 2R_24166695_SNP [dm6]	G	A	1.586e^-4	0.688	UPSTREAM CG3328 INTRON CG3328
3L	4990171	3L_4990171_SNP [dm3] 3L_4990171_SNP [dm6]	T	C	1.587e^-4	0.688	INTRON Con
2L	8575887	2L_8575887_SNP [dm3] 2L_8575887_SNP [dm6]	T	A	1.591e^-4	0.688	INTRON Sema-1a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	19011994	X_19011994_SNP [dm3] X_19117961_SNP [dm6]	C	T	1.592e^-4	0.688	INTERGENIC
2L	5168259	2L_5168259_SNP [dm3] 2L_5168259_SNP [dm6]	G	A	1.599e^-4	0.689	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	2305519	2L_2305519_SNP [dm3] 2L_2305519_SNP [dm6]	A	G	1.620e^-4	0.696	INTERGENIC
3R	25166961	3R_25166961_SNP [dm3] 3R_29341239_SNP [dm6]	T	A	1.630e^-4	0.698	INTERGENIC
3R	26931235	3R_26931235_SNP [dm3] 3R_31105513_SNP [dm6]	C	T	1.631e^-4	0.698	DOWNSTREAM CG11318 INTERGENIC
3L	19572554	3L_19572554_SNP [dm3] 3L_19579454_SNP [dm6]	G	T	1.637e^-4	0.699	INTRON Shal
2R	15897818	2R_15897818_SNP [dm3] 2R_20010313_SNP [dm6]	G	T	1.640e^-4	0.699	INTERGENIC
3R	12973657	3R_12973657_SNP [dm3] 3R_17147935_SNP [dm6]	T	C	1.651e^-4	0.701	INTRON m-cup
2L	6101005	2L_6101005_SNP [dm3] 2L_6101005_SNP [dm6]	A	G	1.653e^-4	0.701	INTRON stai	TF binding site BDTNP1_TFBS_dl
2L	5165994	2L_5165994_SNP [dm3] 2L_5165994_SNP [dm6]	A	G	1.672e^-4	0.707	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2R	18013906	2R_18013906_SNP [dm3] 2R_22126401_SNP [dm6]	A	G	1.674e^-4	0.707	SYNONYMOUS_CODING GM130	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17132695	3L_17132695_SNP [dm3] 3L_17139595_SNP [dm6]	A	G	1.690e^-4	0.71	INTRON Rbp6
3R	9810813	3R_9810813_SNP [dm3] 3R_13985091_SNP [dm6]	T	A	1.695e^-4	0.71	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14324340	2R_14324340_DEL [dm3] 2R_18436835_DEL [dm6]	ATA	A	1.702e^-4	0.71	INTRON CG30118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	9277713	X_9277713_SNP [dm3] X_9383680_SNP [dm6]	G	C	1.704e^-4	0.71	INTRON mgl
3L	413878	3L_413878_DEL [dm3] 3L_413878_DEL [dm6]	CTTTTA	C	1.717e^-4	0.71	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	21078649	2L_21078649_SNP [dm3] 2L_21078649_SNP [dm6]	G	A	1.725e^-4	0.71	INTRON tadr
X	3707215	X_3707215_SNP [dm3] X_3813182_SNP [dm6]	C	T	1.726e^-4	0.71	INTRON ec
2R	18013873	2R_18013873_SNP [dm3] 2R_22126368_SNP [dm6]	T	C	1.727e^-4	0.71	SYNONYMOUS_CODING GM130	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26919440	3R_26919440_SNP [dm3] 3R_31093718_SNP [dm6]	T	C	1.728e^-4	0.71	INTRON CG11317
3L	712226	3L_712226_SNP [dm3] 3L_712226_SNP [dm6]	C	A	1.733e^-4	0.71	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	26919442	3R_26919442_SNP [dm3] 3R_31093720_SNP [dm6]	G	A	1.733e^-4	0.71	INTRON CG11317
X	13934392	X_13934392_SNP [dm3] X_14040359_SNP [dm6]	G	C	1.737e^-4	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26912529	3R_26912529_SNP [dm3] 3R_31086807_SNP [dm6]	A	G	1.743e^-4	0.71	INTERGENIC
2L	5168297	2L_5168297_SNP [dm3] 2L_5168297_SNP [dm6]	C	T	1.743e^-4	0.71	SYNONYMOUS_CODING Msp300 INTRON Msp300
3R	13934493	3R_13934493_SNP [dm3] 3R_18108771_SNP [dm6]	C	T	1.747e^-4	0.71	UPSTREAM tRNA:CR31518 DOWNSTREAM tRNA:CR31242 INTRON sr	TF binding site BDTNP1_TFBS_dl
X	7216806	X_7216806_SNP [dm3] X_7322773_SNP [dm6]	A	C	1.748e^-4	0.71	SYNONYMOUS_CODING Atg5 INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	6962523	3L_6962523_SNP [dm3] 3L_6969423_SNP [dm6]	A	C	1.751e^-4	0.71	UPSTREAM CG9953 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx
3R	5971488	3R_5971488_INS [dm3] 3R_10145766_INS [dm6]	A	AAAT	1.760e^-4	0.71	INTRON Invadolysin	TF binding site BDTNP1_TFBS_dl
3L	7481577	3L_7481577_SNP [dm3] 3L_7488477_SNP [dm6]	A	T	1.760e^-4	0.71	DOWNSTREAM mthl6 INTERGENIC
3R	14700091	3R_14700091_INS [dm3] 3R_18874369_INS [dm6]	T	TT	1.761e^-4	0.71	INTERGENIC
3R	13314664	3R_13314664_SNP [dm3] 3R_17488942_SNP [dm6]	C	T	1.767e^-4	0.71	INTRON Dscam3
3R	26915077	3R_26915077_SNP [dm3] 3R_31089355_SNP [dm6]	A	G	1.771e^-4	0.71	INTERGENIC
2L	20294039	2L_20294039_SNP [dm3] 2L_20294039_SNP [dm6]	T	A	1.772e^-4	0.71	UPSTREAM CG12617 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	10553021	3R_10553021_SNP [dm3] 3R_14727299_SNP [dm6]	A	G	1.773e^-4	0.71	NON_SYNONYMOUS_CODING CG7530
3R	12973195	3R_12973195_SNP [dm3] 3R_17147473_SNP [dm6]	G	T	1.779e^-4	0.711	SYNONYMOUS_CODING m-cup
2L	20294197	2L_20294197_SNP [dm3] 2L_20294197_SNP [dm6]	A	G	1.784e^-4	0.712	UPSTREAM CG12617 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	22090496	3L_22090496_SNP [dm3] 3L_22097396_SNP [dm6]	G	C	1.797e^-4	0.712	INTERGENIC
2R	16227978	2R_16227978_SNP [dm3] 2R_20340473_SNP [dm6]	T	C	1.799e^-4	0.712	INTERGENIC
2L	5556565	2L_5556565_SNP [dm3] 2L_5556565_SNP [dm6]	C	T	1.800e^-4	0.712	SPLICE_SITE_REGION GluRIIA INTRON GluRIIA
X	21946828	X_21946828_SNP [dm3] X_22544992_SNP [dm6]	A	G	1.801e^-4	0.712	UPSTREAM CG17599 INTERGENIC
2R	15897827	2R_15897827_SNP [dm3] 2R_20010322_SNP [dm6]	T	C	1.808e^-4	0.713	INTERGENIC
3R	24976856	3R_24976856_SNP [dm3] 3R_29151134_SNP [dm6]	G	A	1.810e^-4	0.713	SYNONYMOUS_CODING ligatin DOWNSTREAM Slbp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10688842	3L_10688842_SNP [dm3] 3L_10695742_SNP [dm6]	C	A	1.815e^-4	0.713	INTRON NijA
3R	18206382	3R_18206382_SNP [dm3] 3R_22380660_SNP [dm6]	C	T	1.819e^-4	0.714	NON_SYNONYMOUS_CODING CG34149 UPSTREAM CG43342 DOWNSTREAM CG18596	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	14210724	2R_14210724_SNP [dm3] 2R_18323219_SNP [dm6]	T	A	1.829e^-4	0.715	INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	6962486	3L_6962486_SNP [dm3] 3L_6969386_SNP [dm6]	T	G	1.832e^-4	0.715	UPSTREAM CG9953 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx
2L	102961	2L_102961_SNP [dm3] 2L_102961_SNP [dm6]	T	C	1.835e^-4	0.715	DOWNSTREAM Zir INTRON CG11377	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	21261938	3R_21261938_SNP [dm3] 3R_25436216_SNP [dm6]	C	T	1.849e^-4	0.719	INTRON Fur1
3R	15206358	3R_15206358_SNP [dm3] 3R_19380636_SNP [dm6]	G	C	1.862e^-4	0.721	INTRON Ino80
3R	9814003	3R_9814003_SNP [dm3] 3R_13988281_SNP [dm6]	G	A	1.863e^-4	0.721	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2L	20298733	2L_20298733_SNP [dm3] 2L_20298733_SNP [dm6]	G	A	1.870e^-4	0.721	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	15917599	2R_15917599_SNP [dm3] 2R_20030094_SNP [dm6]	A	G	1.880e^-4	0.721	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	17947087	3R_17947087_SNP [dm3] 3R_22121365_SNP [dm6]	T	G	1.881e^-4	0.721	INTRON CG42390
2R	6000114	2R_6000114_SNP [dm3] 2R_10112609_SNP [dm6]	T	C	1.884e^-4	0.721	SPLICE_SITE_REGION Pfk INTRON Pfk
3L	2531643	3L_2531643_SNP [dm3] 3L_2531643_SNP [dm6]	T	A	1.884e^-4	0.721	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	25566358	3R_25566358_SNP [dm3] 3R_29740636_SNP [dm6]	T	C	1.887e^-4	0.721	SYNONYMOUS_CODING CG1969
3R	12492427	3R_12492427_SNP [dm3] 3R_16666705_SNP [dm6]	G	A	1.889e^-4	0.721	INTRON Ubx
3R	5861192	3R_5861192_SNP [dm3] 3R_10035470_SNP [dm6]	A	G	1.895e^-4	0.722	INTRON Mical	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11922600	3L_11922600_SNP [dm3] 3L_11929500_SNP [dm6]	C	G	1.908e^-4	0.725	INTRON CG44837 & 1 other
2L	5165218	2L_5165218_SNP [dm3] 2L_5165218_SNP [dm6]	G	A	1.910e^-4	0.725	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3R	25562573	3R_25562573_SNP [dm3] 3R_29736851_SNP [dm6]	A	G	1.920e^-4	0.727	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	18014029	2R_18014029_SNP [dm3] 2R_22126524_SNP [dm6]	C	T	1.925e^-4	0.728	SYNONYMOUS_CODING GM130	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5449276	X_5449276_SNP [dm3] X_5555243_SNP [dm6]	A	G	1.929e^-4	0.728	INTRON Vsx2	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	13962933	2L_13962933_SNP [dm3] 2L_13962933_SNP [dm6]	G	C	1.935e^-4	0.728	UTR_3_PRIME NimA UPSTREAM NimB1
3R	25570840	3R_25570840_SNP [dm3] 3R_29745118_SNP [dm6]	C	T	1.941e^-4	0.729	UPSTREAM IntS11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25026945	3R_25026945_SNP [dm3] 3R_29201223_SNP [dm6]	C	G	1.951e^-4	0.729	SYNONYMOUS_CODING CG11899 DOWNSTREAM Mesh1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6984461	2L_6984461_SNP [dm3] 2L_6984461_SNP [dm6]	C	T	1.957e^-4	0.729	SYNONYMOUS_CODING uif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4206710	X_4206710_SNP [dm3] X_4312677_SNP [dm6]	A	G	1.960e^-4	0.729	UPSTREAM CG15579 INTRON CR44957
3L	18064514	3L_18064514_SNP [dm3] 3L_18071414_SNP [dm6]	G	A	1.960e^-4	0.729	DOWNSTREAM CG44004 INTRON CG44005
3L	837599	3L_837599_SNP [dm3] 3L_837599_SNP [dm6]	C	T	1.965e^-4	0.729	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	412583	3L_412583_SNP [dm3] 3L_412583_SNP [dm6]	G	T	1.967e^-4	0.729	INTERGENIC
3R	12973174	3R_12973174_SNP [dm3] 3R_17147452_SNP [dm6]	G	C	1.971e^-4	0.729	SYNONYMOUS_CODING m-cup
2L	2706109	2L_2706109_SNP [dm3] 2L_2706109_SNP [dm6]	C	A	1.977e^-4	0.729	INTRON CG31690
3L	712322	3L_712322_SNP [dm3] 3L_712322_SNP [dm6]	A	G	1.978e^-4	0.729	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	16289753	3R_16289753_SNP [dm3] 3R_20464031_SNP [dm6]	G	T	1.980e^-4	0.729	INTRON Gfrl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3L	20288086	3L_20288086_SNP [dm3] 3L_20294986_SNP [dm6]	T	A	1.989e^-4	0.731	UTR_5_PRIME gogo DOWNSTREAM FRG1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	20298560	2L_20298560_DEL [dm3] 2L_20298560_DEL [dm6]	TGA	T	1.993e^-4	0.731	INTERGENIC	TF binding site mE1_TFBS_sens
2R	11571818	2R_11571818_SNP [dm3] 2R_15684313_SNP [dm6]	C	T	1.997e^-4	0.731	SYNONYMOUS_CODING Ranbp11 DOWNSTREAM CG30082 EXON CR43429	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19484343	2R_19484343_SNP [dm3] 2R_23596820_SNP [dm6]	G	A	2.020e^-4	0.736	INTRON apt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12972745	3R_12972745_SNP [dm3] 3R_17147023_SNP [dm6]	A	T	2.022e^-4	0.736	SYNONYMOUS_CODING m-cup	TF binding site mE1_TFBS_cad
2R	19007839	2R_19007839_SNP [dm3] 2R_23120316_SNP [dm6]	T	C	2.022e^-4	0.736	INTERGENIC
2L	10885518	2L_10885518_SNP [dm3] 2L_10885518_SNP [dm6]	T	C	2.030e^-4	0.738	UPSTREAM CR44490 INTERGENIC
3R	15166937	3R_15166937_SNP [dm3] 3R_19341215_SNP [dm6]	G	C	2.042e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14368807	3R_14368807_SNP [dm3] 3R_18543085_SNP [dm6]	A	C	2.045e^-4	0.74	INTRON fru
2L	2243128	2L_2243128_SNP [dm3] 2L_2243128_SNP [dm6]	A	G	2.052e^-4	0.741	INTRON CG4267	TF binding site mE1_TFBS_Trl
X	21947315	X_21947315_MNP [dm3] X_22545479_MNP [dm6]	TAA	AGG	2.060e^-4	0.742	INTERGENIC	transposable element FlyBase
3L	6962547	3L_6962547_SNP [dm3] 3L_6969447_SNP [dm6]	A	G	2.068e^-4	0.742	UPSTREAM CG9953 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx
2R	4269378	2R_4269378_SNP [dm3] 2R_8381873_SNP [dm6]	T	C	2.069e^-4	0.742	INTRON pdm3
3R	25565981	3R_25565981_SNP [dm3] 3R_29740259_SNP [dm6]	A	G	2.070e^-4	0.742	UPSTREAM CG1969 INTRON CG1969	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	20288087	3L_20288087_SNP [dm3] 3L_20294987_SNP [dm6]	A	C	2.077e^-4	0.742	UTR_5_PRIME gogo DOWNSTREAM FRG1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10556464	2L_10556464_SNP [dm3] 2L_10556464_SNP [dm6]	C	A	2.079e^-4	0.742	INTRON Trim9
3R	26331511	3R_26331511_SNP [dm3] 3R_30505789_SNP [dm6]	A	C	2.090e^-4	0.744	UPSTREAM CG15539 & 1 other INTERGENIC
3L	6962575	3L_6962575_SNP [dm3] 3L_6969475_SNP [dm6]	G	A	2.092e^-4	0.744	UPSTREAM CG9953 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx
3R	14978554	3R_14978554_SNP [dm3] 3R_19152832_SNP [dm6]	A	T	2.094e^-4	0.744	INTRON CG5835
2L	6780278	2L_6780278_SNP [dm3] 2L_6780278_SNP [dm6]	G	T	2.101e^-4	0.744	NON_SYNONYMOUS_CODING nrv1
3L	6695293	3L_6695293_SNP [dm3] 3L_6702193_SNP [dm6]	C	T	2.105e^-4	0.744	INTRON SP1173
3L	4736891	3L_4736891_SNP [dm3] 3L_4736891_SNP [dm6]	C	A	2.110e^-4	0.744	INTRON RhoGEF64C
3R	16188297	3R_16188297_SNP [dm3] 3R_20362575_SNP [dm6]	T	A	2.112e^-4	0.744	INTERGENIC
3R	26105032	3R_26105032_SNP [dm3] 3R_30279310_SNP [dm6]	C	T	2.115e^-4	0.744	SYNONYMOUS_CODING hdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	100908	2L_100908_SNP [dm3] 2L_100908_SNP [dm6]	T	C	2.122e^-4	0.744	SYNONYMOUS_CODING Zir
3L	20912441	3L_20912441_SNP [dm3] 3L_20919341_SNP [dm6]	C	T	2.126e^-4	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19352120	3R_19352120_SNP [dm3] 3R_23526398_SNP [dm6]	G	A	2.131e^-4	0.744	INTRON CG10175
3L	3920733	3L_3920733_SNP [dm3] 3L_3920733_SNP [dm6]	G	T	2.133e^-4	0.744	INTRON Eip63F-1
X	8678837	X_8678837_SNP [dm3] X_8784804_SNP [dm6]	C	T	2.136e^-4	0.744	INTRON Lim1
X	13934374	X_13934374_SNP [dm3] X_14040341_SNP [dm6]	C	T	2.138e^-4	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11855618	2R_11855618_SNP [dm3] 2R_15968113_SNP [dm6]	C	G	2.142e^-4	0.744	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
3L	14213560	3L_14213560_SNP [dm3] 3L_14220460_SNP [dm6]	C	A	2.156e^-4	0.746	UPSTREAM nuf INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25565949	3R_25565949_DEL [dm3] 3R_29740227_DEL [dm6]	ATAGCAAATGA...	A	2.156e^-4	0.746	UPSTREAM CG1969 INTRON CG1969	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	14834173	3L_14834173_INS [dm3] 3L_14841073_INS [dm6]	A	ATTGCAT	2.161e^-4	0.746	INTRON CG17839
3R	25021079	3R_25021079_SNP [dm3] 3R_29195357_SNP [dm6]	G	A	2.166e^-4	0.746	UPSTREAM CG14509 INTERGENIC
3R	12973105	3R_12973105_SNP [dm3] 3R_17147383_SNP [dm6]	A	C	2.194e^-4	0.751	INTRON m-cup
3R	24976678	3R_24976678_SNP [dm3] 3R_29150956_SNP [dm6]	T	A	2.194e^-4	0.751	NON_SYNONYMOUS_CODING ligatin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	5686932	3R_5686932_SNP [dm3] 3R_9861210_SNP [dm6]	T	A	2.200e^-4	0.751	INTRON Teh1
2R	17185027	2R_17185027_SNP [dm3] 2R_21297522_SNP [dm6]	C	A	2.203e^-4	0.751	UPSTREAM CG42672 INTRON CG42672 EXON CR44724
3L	10510457	3L_10510457_SNP [dm3] 3L_10517357_SNP [dm6]	C	T	2.204e^-4	0.751	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12973646	3R_12973646_SNP [dm3] 3R_17147924_SNP [dm6]	T	C	2.210e^-4	0.751	INTRON m-cup
3R	12973649	3R_12973649_SNP [dm3] 3R_17147927_SNP [dm6]	G	C	2.210e^-4	0.751	INTRON m-cup
2R	18016435	2R_18016435_SNP [dm3] 2R_22128930_SNP [dm6]	A	T	2.214e^-4	0.751	INTRON NtR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	12588881	2R_12588881_SNP [dm3] 2R_16701376_SNP [dm6]	G	A	2.217e^-4	0.751	INTRON CG30463
2L	8611780	2L_8611780_SNP [dm3] 2L_8611780_SNP [dm6]	A	T	2.226e^-4	0.751	INTRON Sema-1a
3R	5963179	3R_5963179_SNP [dm3] 3R_10137457_SNP [dm6]	A	T	2.230e^-4	0.751	INTRON tws
3L	22114890	3L_22114890_SNP [dm3] 3L_22121790_SNP [dm6]	C	A	2.236e^-4	0.751	UPSTREAM CR45236 & 1 other INTERGENIC
3R	20282112	3R_20282112_SNP [dm3] 3R_24456390_SNP [dm6]	A	T	2.236e^-4	0.751	INTRON nAChRalpha1
3L	6547969	3L_6547969_SNP [dm3] 3L_6554869_SNP [dm6]	G	C	2.246e^-4	0.751	INTRON CG18769
X	14260086	X_14260086_SNP [dm3] X_14366053_SNP [dm6]	A	G	2.250e^-4	0.751	INTRON dpr8
2L	19923610	2L_19923610_INS [dm3] 2L_19923610_INS [dm6]	C	CCAGC	2.257e^-4	0.751	DOWNSTREAM CR43827 INTRON sick
2L	18848488	2L_18848488_SNP [dm3] 2L_18848488_SNP [dm6]	A	C	2.267e^-4	0.751	INTRON CG17321
3R	22901068	3R_22901068_SNP [dm3] 3R_27075346_SNP [dm6]	A	T	2.278e^-4	0.751	UPSTREAM CG14257 INTERGENIC
3R	26331503	3R_26331503_SNP [dm3] 3R_30505781_SNP [dm6]	G	T	2.280e^-4	0.751	UPSTREAM CG15539 & 1 other INTERGENIC
2L	17287730	2L_17287730_SNP [dm3] 2L_17287730_SNP [dm6]	C	T	2.284e^-4	0.751	DOWNSTREAM CG15140 INTERGENIC
3L	20901651	3L_20901651_SNP [dm3] 3L_20908551_SNP [dm6]	A	G	2.289e^-4	0.751	INTERGENIC	TF binding site mE1_TFBS_inv
2R	12631163	2R_12631163_SNP [dm3] 2R_16743658_SNP [dm6]	G	A	2.293e^-4	0.751	DOWNSTREAM Sfp53D INTERGENIC
2L	3967747	2L_3967747_SNP [dm3] 2L_3967747_SNP [dm6]	A	G	2.294e^-4	0.751	INTRON fred	TF binding site mE1_TFBS_bab1
3R	5906488	3R_5906488_SNP [dm3] 3R_10080766_SNP [dm6]	A	T	2.295e^-4	0.751	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3R	27384040	3R_27384040_SNP [dm3] 3R_31558318_SNP [dm6]	A	G	2.297e^-4	0.751	NON_SYNONYMOUS_CODING nyo
3L	14834278	3L_14834278_SNP [dm3] 3L_14841178_SNP [dm6]	G	T	2.299e^-4	0.751	INTRON CG17839
2L	8611018	2L_8611018_SNP [dm3] 2L_8611018_SNP [dm6]	T	C	2.302e^-4	0.751	INTRON Sema-1a	TF binding site mE1_TFBS_sens
2L	8611039	2L_8611039_SNP [dm3] 2L_8611039_SNP [dm6]	A	T	2.302e^-4	0.751	INTRON Sema-1a	TF binding site mE1_TFBS_sens
2L	8612051	2L_8612051_SNP [dm3] 2L_8612051_SNP [dm6]	A	C	2.302e^-4	0.751	INTRON Sema-1a
3L	391931	3L_391931_INS [dm3] 3L_391931_INS [dm6]	A	ATTGGATAATTG...	2.302e^-4	0.751	DOWNSTREAM CR45378 INTRON trh
3R	15000216	3R_15000216_SNP [dm3] 3R_19174494_SNP [dm6]	A	C	2.304e^-4	0.751	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_hb
3L	14809624	3L_14809624_SNP [dm3] 3L_14816524_SNP [dm6]	C	T	2.316e^-4	0.754	INTRON CG17839
X	21950071	X_21950071_SNP [dm3] X_22548235_SNP [dm6]	T	C	2.332e^-4	0.756	DOWNSTREAM CG17601 INTERGENIC
3R	14623642	3R_14623642_SNP [dm3] 3R_18797920_SNP [dm6]	G	A	2.334e^-4	0.756	INTERGENIC
2L	20289581	2L_20289581_SNP [dm3] 2L_20289581_SNP [dm6]	C	T	2.336e^-4	0.756	INTERGENIC
2R	13843547	2R_13843547_SNP [dm3] 2R_17956042_SNP [dm6]	G	C	2.348e^-4	0.758	SYNONYMOUS_CODING PpY-55A DOWNSTREAM CR44418
3R	12974686	3R_12974686_SNP [dm3] 3R_17148964_SNP [dm6]	G	A	2.350e^-4	0.758	UTR_5_PRIME m-cup UPSTREAM Det	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5523968	2L_5523968_SNP [dm3] 2L_5523968_SNP [dm6]	T	A	2.356e^-4	0.759	UPSTREAM CG6907 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	5662627	X_5662627_DEL [dm3] X_5768594_DEL [dm6]	TTGTGATATT	GAAC	2.360e^-4	0.759	INTRON CG42699 & 1 other
3L	6962141	3L_6962141_SNP [dm3] 3L_6969041_SNP [dm6]	A	G	2.372e^-4	0.761	UTR_5_PRIME Mis12 UPSTREAM CG9953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx
3L	2639316	3L_2639316_SNP [dm3] 3L_2639316_SNP [dm6]	C	T	2.415e^-4	0.772	SYNONYMOUS_CODING MEP-1 UTR_3_PRIME CG42245	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7480613	3L_7480613_SNP [dm3] 3L_7487513_SNP [dm6]	A	G	2.419e^-4	0.772	INTRON mthl6
2R	11718346	2R_11718346_DEL [dm3] 2R_15830841_DEL [dm6]	TT	T	2.422e^-4	0.772	INTRON tun & 1 other	regulatory region REDfly_CRMs
X	14260068	X_14260068_INS [dm3] X_14366035_INS [dm6]	G	GGG	2.429e^-4	0.772	INTRON dpr8
3R	20786039	3R_20786039_SNP [dm3] 3R_24960317_SNP [dm6]	C	A	2.431e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12512019	3L_12512019_SNP [dm3] 3L_12518919_SNP [dm6]	C	T	2.433e^-4	0.772	SYNONYMOUS_CODING tral	TF binding site mE1_TFBS_HSA
3L	11912334	3L_11912334_DEL [dm3] 3L_11919234_DEL [dm6]	AAAAA	A	2.442e^-4	0.772	INTRON CG44837	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	16947869	2R_16947869_SNP [dm3] 2R_21060364_SNP [dm6]	C	T	2.442e^-4	0.772	SYNONYMOUS_CODING CG15653 UPSTREAM mRpL54 DOWNSTREAM cpa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	13934383	X_13934383_DEL [dm3] X_14040350_DEL [dm6]	TT	T	2.449e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12723376	2L_12723376_SNP [dm3] 2L_12723376_SNP [dm6]	T	C	2.452e^-4	0.772	NON_SYNONYMOUS_CODING MRP	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_sens
3L	1740392	3L_1740392_SNP [dm3] 3L_1740392_SNP [dm6]	C	T	2.453e^-4	0.772	INTRON Gk
2L	10218415	2L_10218415_SNP [dm3] 2L_10218415_SNP [dm6]	C	A	2.461e^-4	0.772	INTRON Npc1a	TF binding site mE1_TFBS_HSA
2L	10797835	2L_10797835_SNP [dm3] 2L_10797835_SNP [dm6]	C	T	2.462e^-4	0.772	INTRON CG31869
3R	20341951	3R_20341951_SNP [dm3] 3R_24516229_SNP [dm6]	C	T	2.467e^-4	0.772	SYNONYMOUS_CODING CG13617	TF binding site mE1_TFBS_chinmo
3R	15223794	3R_15223794_SNP [dm3] 3R_19398072_SNP [dm6]	C	T	2.467e^-4	0.772	SYNONYMOUS_CODING CG31244 INTRON Ino80	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3527771	3L_3527771_SNP [dm3] 3L_3527771_SNP [dm6]	A	T	2.473e^-4	0.772	INTRON Eip63E
X	9429663	X_9429663_SNP [dm3] X_9535630_SNP [dm6]	C	T	2.474e^-4	0.772	INTRON CG32700
X	4758462	X_4758462_SNP [dm3] X_4864429_SNP [dm6]	A	T	2.498e^-4	0.773	INTRON CG42594
3R	25574897	3R_25574897_SNP [dm3] 3R_29749175_SNP [dm6]	T	C	2.498e^-4	0.773	UPSTREAM yata & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	2963566	3R_2963566_SNP [dm3] 3R_7137844_SNP [dm6]	C	T	2.507e^-4	0.773	SPLICE_SITE_REGION Fer1 INTRON Fer1	TF binding site BDTNP1_TFBS_prd
2R	14558798	2R_14558798_SNP [dm3] 2R_18671293_SNP [dm6]	T	G	2.514e^-4	0.773	INTRON edl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	5672832	2R_5672832_SNP [dm3] 2R_9785327_SNP [dm6]	A	T	2.514e^-4	0.773	INTRON CG1688
3L	5201817	3L_5201817_INS [dm3] 3L_5208717_INS [dm6]	A	AT	2.522e^-4	0.773	INTRON shep
3R	25242529	3R_25242529_SNP [dm3] 3R_29416807_SNP [dm6]	A	T	2.523e^-4	0.773	INTRON Ptp99A
3L	5503177	3L_5503177_SNP [dm3] 3L_5510077_SNP [dm6]	T	G	2.530e^-4	0.773	INTRON CG34342
3R	26989300	3R_26989300_SNP [dm3] 3R_31163578_SNP [dm6]	T	C	2.536e^-4	0.773	SYNONYMOUS_CODING stops INTRON Gycbeta100B	TF binding site mE1_TFBS_chinmo
3R	20466981	3R_20466981_SNP [dm3] 3R_24641259_SNP [dm6]	C	G	2.537e^-4	0.773	INTRON puf
2R	18016521	2R_18016521_SNP [dm3] 2R_22129016_SNP [dm6]	A	G	2.540e^-4	0.773	SYNONYMOUS_CODING NtR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	16405283	2L_16405283_SNP [dm3] 2L_16405283_SNP [dm6]	T	A	2.543e^-4	0.773	SYNONYMOUS_CODING CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	837455	3L_837455_SNP [dm3] 3L_837455_SNP [dm6]	T	G	2.546e^-4	0.773	UTR_5_PRIME CG13901 UPSTREAM CG13887 DOWNSTREAM CG42554	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_HSA
2L	10488856	2L_10488856_SNP [dm3] 2L_10488856_SNP [dm6]	A	G	2.548e^-4	0.773	UTR_5_PRIME CG6144 UPSTREAM CG7456	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	20342169	3R_20342169_SNP [dm3] 3R_24516447_SNP [dm6]	G	A	2.556e^-4	0.773	SYNONYMOUS_CODING CG13617	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15838896	2R_15838896_SNP [dm3] 2R_19951391_SNP [dm6]	C	T	2.556e^-4	0.773	START_GAINED CG10822 UTR_5_PRIME CG10822
3L	706849	3L_706849_SNP [dm3] 3L_706849_SNP [dm6]	T	C	2.558e^-4	0.773	SYNONYMOUS_CODING CG13895	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	855260	2L_855260_SNP [dm3] 2L_855260_SNP [dm6]	T	C	2.559e^-4	0.773	UPSTREAM CG13949 DOWNSTREAM kraken INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	15215592	3R_15215592_SNP [dm3] 3R_19389870_SNP [dm6]	C	A	2.561e^-4	0.773	UPSTREAM CG18493 DOWNSTREAM CG3734 INTRON Ino80
3L	5216570	3L_5216570_SNP [dm3] 3L_5223470_SNP [dm6]	T	C	2.566e^-4	0.773	INTRON shep
3R	26491044	3R_26491044_DEL [dm3] 3R_30665322_DEL [dm6]	AT	C	2.571e^-4	0.773	INTRON CR45191
2L	20237740	2L_20237740_SNP [dm3] 2L_20237740_SNP [dm6]	C	A	2.578e^-4	0.773	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22056916	3L_22056916_SNP [dm3] 3L_22063816_SNP [dm6]	A	G	2.578e^-4	0.773	SYNONYMOUS_CODING Oct-TyrR
3L	22114203	3L_22114203_SNP [dm3] 3L_22121103_SNP [dm6]	G	A	2.578e^-4	0.773	UPSTREAM CR45236 INTERGENIC
2L	5167718	2L_5167718_SNP [dm3] 2L_5167718_SNP [dm6]	C	T	2.591e^-4	0.776	SYNONYMOUS_CODING Msp300 INTRON Msp300
X	3124960	X_3124960_SNP [dm3] X_3230927_SNP [dm6]	C	T	2.600e^-4	0.777	INTRON dnc
2R	15039087	2R_15039087_SNP [dm3] 2R_19151582_SNP [dm6]	G	A	2.606e^-4	0.777	INTRON ena	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25574765	3R_25574765_SNP [dm3] 3R_29749043_SNP [dm6]	T	A	2.611e^-4	0.777	UTR_5_PRIME ATPsyn-gamma UPSTREAM yata & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	19802933	2L_19802933_SNP [dm3] 2L_19802933_SNP [dm6]	G	A	2.613e^-4	0.777	INTRON sick
3R	8270638	3R_8270638_SNP [dm3] 3R_12444916_SNP [dm6]	C	T	2.625e^-4	0.78	SYNONYMOUS_CODING Desat1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11570774	2R_11570774_SNP [dm3] 2R_15683269_SNP [dm6]	G	T	2.651e^-4	0.786	SYNONYMOUS_CODING Ranbp11 DOWNSTREAM CG30091 EXON CR43429	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	20237757	2L_20237757_SNP [dm3] 2L_20237757_SNP [dm6]	C	T	2.656e^-4	0.786	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11922598	3L_11922598_INS [dm3] 3L_11929498_INS [dm6]	G	GAG	2.661e^-4	0.786	INTRON CG44837 & 1 other
2R	18536634	2R_18536634_SNP [dm3] 2R_22649129_SNP [dm6]	T	C	2.663e^-4	0.786	UTR_3_PRIME CG3746 UPSTREAM CG34445	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13081471	2L_13081471_SNP [dm3] 2L_13081471_SNP [dm6]	T	C	2.675e^-4	0.788	INTERGENIC
2L	9463855	2L_9463855_SNP [dm3] 2L_9463855_SNP [dm6]	C	T	2.687e^-4	0.788	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_kn
2L	8611809	2L_8611809_SNP [dm3] 2L_8611809_SNP [dm6]	T	C	2.687e^-4	0.788	INTRON Sema-1a
2L	8611779	2L_8611779_SNP [dm3] 2L_8611779_SNP [dm6]	A	T	2.690e^-4	0.788	INTRON Sema-1a
2R	11718340	2R_11718340_SNP [dm3] 2R_15830835_SNP [dm6]	C	T	2.696e^-4	0.788	INTRON tun & 1 other	regulatory region REDfly_CRMs
3L	1740467	3L_1740467_SNP [dm3] 3L_1740467_SNP [dm6]	A	C	2.696e^-4	0.788	INTRON Gk
3L	838778	3L_838778_INS [dm3] 3L_838778_INS [dm6]	T	TGATAAATACATACGT...	2.700e^-4	0.788	UPSTREAM CG13901 INTRON CG13887	TF binding site mE1_TFBS_inv
2L	5165989	2L_5165989_SNP [dm3] 2L_5165989_SNP [dm6]	C	T	2.708e^-4	0.788	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2R	16700777	2R_16700777_SNP [dm3] 2R_20813272_SNP [dm6]	G	A	2.708e^-4	0.788	INTERGENIC
2L	109562	2L_109562_SNP [dm3] 2L_109562_SNP [dm6]	C	G	2.717e^-4	0.788	UPSTREAM Sam-S INTRON Sam-S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6847877	3L_6847877_SNP [dm3] 3L_6854777_SNP [dm6]	T	A	2.721e^-4	0.788	INTERGENIC
2R	12587620	2R_12587620_SNP [dm3] 2R_16700115_SNP [dm6]	C	T	2.724e^-4	0.788	INTRON CG30463
X	3950362	X_3950362_SNP [dm3] X_4056329_SNP [dm6]	T	C	2.724e^-4	0.788	INTERGENIC
X	20554820	X_20554820_SNP [dm3] X_20683793_SNP [dm6]	T	C	2.735e^-4	0.789	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
3L	2302909	3L_2302909_SNP [dm3] 3L_2302909_SNP [dm6]	G	T	2.739e^-4	0.789	INTERGENIC
3R	24811409	3R_24811409_SNP [dm3] 3R_28985687_SNP [dm6]	G	T	2.740e^-4	0.789	INTERGENIC
3R	8834036	3R_8834036_SNP [dm3] 3R_13008314_SNP [dm6]	G	T	2.755e^-4	0.79	UTR_3_PRIME CG7518 DOWNSTREAM CG8031 & 1 other	TF binding site mE1_TFBS_cad
2L	22255745	2L_22255745_SNP [dm3] 2L_22255745_SNP [dm6]	T	A	2.759e^-4	0.79	INTRON Tif-IA	transposable element FlyBase
3R	14623691	3R_14623691_INS [dm3] 3R_18797969_INS [dm6]	T	TGT	2.765e^-4	0.79	INTERGENIC
3R	13307854	3R_13307854_SNP [dm3] 3R_17482132_SNP [dm6]	A	G	2.768e^-4	0.79	DOWNSTREAM Dscam3 INTRON Dscam3
X	19420889	X_19420889_SNP [dm3] X_19526856_SNP [dm6]	A	C	2.773e^-4	0.79	NON_SYNONYMOUS_CODING CoRest INTRON CoRest	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21372662	3R_21372662_INS [dm3] 3R_25546940_INS [dm6]	C	CC	2.777e^-4	0.79	INTRON msi
3R	26922521	3R_26922521_SNP [dm3] 3R_31096799_SNP [dm6]	T	A	2.781e^-4	0.79	INTRON CG11317
3L	12088845	3L_12088845_SNP [dm3] 3L_12095745_SNP [dm6]	T	G	2.782e^-4	0.79	INTERGENIC
3L	10373043	3L_10373043_SNP [dm3] 3L_10379943_SNP [dm6]	T	A	2.789e^-4	0.79	INTERGENIC
3L	838092	3L_838092_INS [dm3] 3L_838092_INS [dm6]	C	CAAC	2.793e^-4	0.79	UTR_5_PRIME CG13887 UPSTREAM CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	6100998	2L_6100998_INS [dm3] 2L_6100998_INS [dm6]	T	TATG	2.794e^-4	0.79	INTRON stai	TF binding site BDTNP1_TFBS_dl
2R	16458955	2R_16458955_SNP [dm3] 2R_20571450_SNP [dm6]	C	T	2.802e^-4	0.79	INTRON qsm
3L	22106894	3L_22106894_SNP [dm3] 3L_22113794_SNP [dm6]	T	C	2.805e^-4	0.79	INTERGENIC
3L	22119430	3L_22119430_SNP [dm3] 3L_22126330_SNP [dm6]	T	G	2.805e^-4	0.79	INTERGENIC
2L	6107970	2L_6107970_SNP [dm3] 2L_6107970_SNP [dm6]	T	A	2.808e^-4	0.79	INTRON stai
3R	24977004	3R_24977004_SNP [dm3] 3R_29151282_SNP [dm6]	A	G	2.820e^-4	0.793	DOWNSTREAM Slbp INTRON ligatin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26331662	3R_26331662_SNP [dm3] 3R_30505940_SNP [dm6]	G	A	2.825e^-4	0.793	UPSTREAM CG15539 & 2 others INTERGENIC
3R	19747095	3R_19747095_DEL [dm3] 3R_23921373_DEL [dm6]	GG	G	2.832e^-4	0.793	INTRON sba	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	24974171	3R_24974171_SNP [dm3] 3R_29148449_SNP [dm6]	A	C	2.844e^-4	0.793	UTR_5_PRIME Pglym78 UPSTREAM CG11882	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	20875371	3L_20875371_SNP [dm3] 3L_20882271_SNP [dm6]	C	A	2.847e^-4	0.793	INTRON CG32432
3L	393293	3L_393293_SNP [dm3] 3L_393293_SNP [dm6]	A	T	2.853e^-4	0.793	UPSTREAM CR43969 & 2 others INTERGENIC	TF binding site mE1_TFBS_Trl
3L	442004	3L_442004_SNP [dm3] 3L_442004_SNP [dm6]	G	A	2.859e^-4	0.793	UPSTREAM klar DOWNSTREAM klar INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
2L	14424118	2L_14424118_SNP [dm3] 2L_14424118_SNP [dm6]	C	T	2.866e^-4	0.793	DOWNSTREAM Cpr35B INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26926580	3R_26926580_SNP [dm3] 3R_31100858_SNP [dm6]	G	C	2.877e^-4	0.793	NON_SYNONYMOUS_CODING CG15553
3L	11922601	3L_11922601_SNP [dm3] 3L_11929501_SNP [dm6]	A	C	2.881e^-4	0.793	INTRON CG44837 & 1 other
3R	7273988	3R_7273988_SNP [dm3] 3R_11448266_SNP [dm6]	C	T	2.882e^-4	0.793	UTR_5_PRIME sals INTRON CG17230 & 1 other
2R	16644155	2R_16644155_SNP [dm3] 2R_20756650_SNP [dm6]	G	T	2.894e^-4	0.793	INTERGENIC	TF binding site mE1_TFBS_inv
3L	9227176	3L_9227176_SNP [dm3] 3L_9234076_SNP [dm6]	G	T	2.897e^-4	0.793	INTERGENIC
3L	3314092	3L_3314092_SNP [dm3] 3L_3314092_SNP [dm6]	C	T	2.899e^-4	0.793	UPSTREAM Drsl2 & 1 other DOWNSTREAM ZnT63C INTERGENIC
3R	8478724	3R_8478724_SNP [dm3] 3R_12653002_SNP [dm6]	C	T	2.903e^-4	0.793	DOWNSTREAM Dtg INTERGENIC
2R	15841000	2R_15841000_SNP [dm3] 2R_19953495_SNP [dm6]	G	A	2.917e^-4	0.793	UPSTREAM CG44622 INTERGENIC
X	21948706	X_21948706_SNP [dm3] X_22546870_SNP [dm6]	G	A	2.919e^-4	0.793	UPSTREAM CG17601 INTERGENIC
3R	5963561	3R_5963561_SNP [dm3] 3R_10137839_SNP [dm6]	T	C	2.924e^-4	0.793	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	580447	3L_580447_SNP [dm3] 3L_580447_SNP [dm6]	G	A	2.925e^-4	0.793	UTR_3_PRIME hipk UPSTREAM Ppm1
3R	26152136	3R_26152136_SNP [dm3] 3R_30326414_SNP [dm6]	A	G	2.926e^-4	0.793	INTRON hdc
3R	24427748	3R_24427748_SNP [dm3] 3R_28602026_SNP [dm6]	A	T	2.933e^-4	0.793	UPSTREAM snoRNA:Psi28S-3405c & 2 others DOWNSTREAM snoRNA:Psi28S-3405a & 2 others INTRON Hrb98DE
2R	15256886	2R_15256886_SNP [dm3] 2R_19369381_SNP [dm6]	C	T	2.934e^-4	0.793	INTRON CG9416
2R	12994085	2R_12994085_SNP [dm3] 2R_17106580_SNP [dm6]	A	T	2.935e^-4	0.793	INTRON CG30456	TF binding site mE1_TFBS_cad
2L	10565818	2L_10565818_SNP [dm3] 2L_10565818_SNP [dm6]	A	T	2.935e^-4	0.793	INTRON Trim9
2R	15463534	2R_15463534_SNP [dm3] 2R_19576029_SNP [dm6]	A	C	2.945e^-4	0.793	INTRON sm
X	13061659	X_13061659_SNP [dm3] X_13167626_SNP [dm6]	T	C	2.962e^-4	0.793	SYNONYMOUS_CODING CG34411
3R	24380547	3R_24380547_SNP [dm3] 3R_28554825_SNP [dm6]	A	T	2.965e^-4	0.793	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	167152	2L_167152_SNP [dm3] 2L_167152_SNP [dm6]	A	G	2.968e^-4	0.793	INTRON spen	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	25973756	3R_25973756_SNP [dm3] 3R_30148034_SNP [dm6]	C	T	2.970e^-4	0.793	INTRON AdoR
3R	26898465	3R_26898465_SNP [dm3] 3R_31072743_SNP [dm6]	T	C	2.972e^-4	0.793	INTRON Sox100B
2L	20268667	2L_20268667_SNP [dm3] 2L_20268667_SNP [dm6]	A	G	2.972e^-4	0.793	INTERGENIC
2L	110511	2L_110511_SNP [dm3] 2L_110511_SNP [dm6]	G	A	2.974e^-4	0.793	INTRON Sam-S
2L	110593	2L_110593_SNP [dm3] 2L_110593_SNP [dm6]	G	A	2.974e^-4	0.793	INTRON Sam-S
2L	99531	2L_99531_SNP [dm3] 2L_99531_SNP [dm6]	G	A	2.974e^-4	0.793	SYNONYMOUS_CODING Zir
3R	16205676	3R_16205676_SNP [dm3] 3R_20379954_SNP [dm6]	A	T	2.974e^-4	0.793	UTR_3_PRIME Gfrl
3R	13934449	3R_13934449_SNP [dm3] 3R_18108727_SNP [dm6]	T	A	2.974e^-4	0.793	UPSTREAM tRNA:CR31518 DOWNSTREAM tRNA:CR31242 INTRON sr	TF binding site BDTNP1_TFBS_dl
3L	7151754	3L_7151754_SNP [dm3] 3L_7158654_SNP [dm6]	G	A	2.992e^-4	0.793	SYNONYMOUS_CODING CG8620 UTR_3_PRIME CG8620 DOWNSTREAM Dscam2
2L	8860914	2L_8860914_SNP [dm3] 2L_8860914_SNP [dm6]	T	A	2.994e^-4	0.793	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13793928	3R_13793928_SNP [dm3] 3R_17968206_SNP [dm6]	T	G	2.995e^-4	0.793	INTRON cpo
3R	13272905	3R_13272905_SNP [dm3] 3R_17447183_SNP [dm6]	A	C	2.995e^-4	0.793	DOWNSTREAM CG5873 INTRON Eh
3L	11728415	3L_11728415_SNP [dm3] 3L_11735315_SNP [dm6]	C	T	3.003e^-4	0.793	UTR_3_PRIME CG6024 DOWNSTREAM CG6024
2L	5167745	2L_5167745_SNP [dm3] 2L_5167745_SNP [dm6]	G	C	3.006e^-4	0.793	SYNONYMOUS_CODING Msp300 INTRON Msp300
2R	15838900	2R_15838900_SNP [dm3] 2R_19951395_SNP [dm6]	C	T	3.006e^-4	0.793	UTR_5_PRIME CG10822
3L	12848128	3L_12848128_SNP [dm3] 3L_12855028_SNP [dm6]	C	T	3.008e^-4	0.793	INTRON Ent3
X	21947537	X_21947537_SNP [dm3] X_22545701_SNP [dm6]	C	G	3.009e^-4	0.793	INTERGENIC	transposable element FlyBase
3L	20906498	3L_20906498_SNP [dm3] 3L_20913398_SNP [dm6]	A	T	3.018e^-4	0.793	DOWNSTREAM CR45733 INTRON CR43930
3R	8364678	3R_8364678_SNP [dm3] 3R_12538956_SNP [dm6]	T	C	3.018e^-4	0.793	INTRON Octbeta3R
3R	26118548	3R_26118548_SNP [dm3] 3R_30292826_SNP [dm6]	A	T	3.023e^-4	0.794	INTRON hdc
2L	9233504	2L_9233504_SNP [dm3] 2L_9233504_SNP [dm6]	A	G	3.026e^-4	0.794	INTRON tai
2L	106031	2L_106031_SNP [dm3] 2L_106031_SNP [dm6]	T	C	3.036e^-4	0.794	SYNONYMOUS_CODING Nhe1 UPSTREAM Sam-S	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	441610	3L_441610_SNP [dm3] 3L_441610_SNP [dm6]	C	A	3.038e^-4	0.794	UPSTREAM klar DOWNSTREAM klar INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Trl
3R	5964039	3R_5964039_SNP [dm3] 3R_10138317_SNP [dm6]	C	T	3.045e^-4	0.794	INTRON tws
2R	11570723	2R_11570723_SNP [dm3] 2R_15683218_SNP [dm6]	C	T	3.047e^-4	0.794	SYNONYMOUS_CODING Ranbp11 DOWNSTREAM CG30091 EXON CR43429	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	18014497	2R_18014497_SNP [dm3] 2R_22126992_SNP [dm6]	A	T	3.070e^-4	0.795	NON_SYNONYMOUS_CODING GM130 UPSTREAM NtR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20238879	X_20238879_SNP [dm3] X_20367852_SNP [dm6]	A	C	3.078e^-4	0.795	INTERGENIC
X	9449582	X_9449582_DEL [dm3] X_9555549_DEL [dm6]	ATA	A	3.085e^-4	0.795	UTR_3_PRIME RpS28b DOWNSTREAM CG15317 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	3794654	3L_3794654_SNP [dm3] 3L_3794654_SNP [dm6]	A	C	3.086e^-4	0.795	START_GAINED CG32264 UTR_5_PRIME CG32264 INTRON CG32264
3L	22099171	3L_22099171_SNP [dm3] 3L_22106071_SNP [dm6]	A	T	3.087e^-4	0.795	INTERGENIC
3L	8449205	3L_8449205_SNP [dm3] 3L_8456105_SNP [dm6]	A	T	3.087e^-4	0.795	INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26918992	3R_26918992_SNP [dm3] 3R_31093270_SNP [dm6]	G	A	3.091e^-4	0.795	INTRON CG11317
2L	21067663	2L_21067663_SNP [dm3] 2L_21067663_SNP [dm6]	C	G	3.092e^-4	0.795	INTRON CG9265
3R	16143470	3R_16143470_DEL [dm3] 3R_20317748_DEL [dm6]	AAC	A	3.095e^-4	0.795	UPSTREAM CG42668 INTRON CG42668
X	5662545	X_5662545_SNP [dm3] X_5768512_SNP [dm6]	T	C	3.097e^-4	0.795	INTRON CG42699 & 1 other
2L	10488585	2L_10488585_SNP [dm3] 2L_10488585_SNP [dm6]	G	A	3.099e^-4	0.795	UTR_5_PRIME CG7456 UPSTREAM CG6144	TF binding site mE1_TFBS_Ubx
2R	19696085	2R_19696085_SNP [dm3] 2R_23808562_SNP [dm6]	G	C	3.101e^-4	0.795	SYNONYMOUS_CODING Ssrp UPSTREAM CG5543	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16074809	2R_16074809_SNP [dm3] 2R_20187304_SNP [dm6]	G	T	3.103e^-4	0.795	INTERGENIC
2L	8615697	2L_8615697_SNP [dm3] 2L_8615697_SNP [dm6]	C	A	3.110e^-4	0.795	INTRON Sema-1a
3L	22113158	3L_22113158_SNP [dm3] 3L_22120058_SNP [dm6]	T	A	3.116e^-4	0.795	INTERGENIC
2R	4001785	2R_4001785_SNP [dm3] 2R_8114280_SNP [dm6]	C	T	3.117e^-4	0.795	DOWNSTREAM Asap INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19708998	2R_19708998_SNP [dm3] 2R_23821475_SNP [dm6]	A	G	3.122e^-4	0.795	INTRON CG5549	TF binding site mE1_TFBS_chinmo
3R	17936800	3R_17936800_SNP [dm3] 3R_22111078_SNP [dm6]	G	A	3.133e^-4	0.797	UPSTREAM CG5778 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18074709	3L_18074709_SNP [dm3] 3L_18081609_SNP [dm6]	C	A	3.160e^-4	0.799	INTRON CR43253
3R	27173973	3R_27173973_SNP [dm3] 3R_31348251_SNP [dm6]	C	T	3.163e^-4	0.799	INTRON CG34347	regulatory region REDfly_CRMs
2R	11531077	2R_11531077_SNP [dm3] 2R_15643572_SNP [dm6]	T	G	3.169e^-4	0.799	INTRON CG42524
3R	25566674	3R_25566674_SNP [dm3] 3R_29740952_SNP [dm6]	C	T	3.169e^-4	0.799	SYNONYMOUS_CODING CG1969
3R	25566677	3R_25566677_SNP [dm3] 3R_29740955_SNP [dm6]	T	C	3.169e^-4	0.799	SYNONYMOUS_CODING CG1969
3R	5971347	3R_5971347_SNP [dm3] 3R_10145625_SNP [dm6]	A	G	3.170e^-4	0.799	INTRON Invadolysin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
2L	20259776	2L_20259776_SNP [dm3] 2L_20259776_SNP [dm6]	A	C	3.172e^-4	0.799	INTERGENIC
3L	11933582	3L_11933582_SNP [dm3] 3L_11940482_SNP [dm6]	C	T	3.182e^-4	0.801	INTERGENIC
2L	2247523	2L_2247523_SNP [dm3] 2L_2247523_SNP [dm6]	T	G	3.193e^-4	0.801	DOWNSTREAM CR42859 INTERGENIC
3L	15704758	3L_15704758_SNP [dm3] 3L_15711658_SNP [dm6]	T	C	3.194e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	8612043	2L_8612043_SNP [dm3] 2L_8612043_SNP [dm6]	C	A	3.194e^-4	0.801	INTRON Sema-1a
X	5290172	X_5290172_SNP [dm3] X_5396139_SNP [dm6]	G	A	3.204e^-4	0.802	INTRON SK
2L	1608716	2L_1608716_SNP [dm3] 2L_1608716_SNP [dm6]	T	A	3.207e^-4	0.802	DOWNSTREAM haf INTRON CG31935
3R	20466948	3R_20466948_SNP [dm3] 3R_24641226_SNP [dm6]	G	A	3.214e^-4	0.802	SPLICE_SITE_REGION puf INTRON puf
3L	18762634	3L_18762634_SNP [dm3] 3L_18769534_SNP [dm6]	T	C	3.223e^-4	0.803	INTRON ftz-f1
2L	21191511	2L_21191511_INS [dm3] 2L_21191511_INS [dm6]	A	AA	3.238e^-4	0.804	INTRON Ret	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl
3R	14657128	3R_14657128_SNP [dm3] 3R_18831406_SNP [dm6]	C	T	3.240e^-4	0.804	INTRON CG18208
2R	11571296	2R_11571296_SNP [dm3] 2R_15683791_SNP [dm6]	T	A	3.240e^-4	0.804	SYNONYMOUS_CODING Ranbp11 EXON CR43429	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	580702	3L_580702_DEL [dm3] 3L_580702_DEL [dm6]	CC	T	3.243e^-4	0.804	UTR_3_PRIME hipk UPSTREAM Ppm1
3L	4545923	3L_4545923_SNP [dm3] 3L_4545923_SNP [dm6]	T	A	3.249e^-4	0.804	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9233581	2L_9233581_DEL [dm3] 2L_9233581_DEL [dm6]	TTAAATTAATC...	T	3.260e^-4	0.804	INTRON tai
3L	2531631	3L_2531631_SNP [dm3] 3L_2531631_SNP [dm6]	A	C	3.260e^-4	0.804	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	24132528	3R_24132528_SNP [dm3] 3R_28306806_SNP [dm6]	T	A	3.268e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	15166932	3R_15166932_SNP [dm3] 3R_19341210_SNP [dm6]	C	G	3.281e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17142149	3R_17142149_SNP [dm3] 3R_21316427_SNP [dm6]	T	C	3.284e^-4	0.804	UPSTREAM mir-4951 EXON Hsromega
3R	26486380	3R_26486380_SNP [dm3] 3R_30660658_SNP [dm6]	A	T	3.285e^-4	0.804	INTERGENIC
2R	17692459	2R_17692459_SNP [dm3] 2R_21804954_SNP [dm6]	G	A	3.300e^-4	0.804	DOWNSTREAM CR9284 INTERGENIC
3L	17603716	3L_17603716_SNP [dm3] 3L_17610616_SNP [dm6]	T	G	3.301e^-4	0.804	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl
X	13204681	X_13204681_SNP [dm3] X_13310648_SNP [dm6]	A	G	3.311e^-4	0.804	INTRON IP3K2
3R	23978630	3R_23978630_SNP [dm3] 3R_28152908_SNP [dm6]	C	G	3.311e^-4	0.804	INTRON CG34354
3R	25571996	3R_25571996_SNP [dm3] 3R_29746274_SNP [dm6]	G	C	3.315e^-4	0.804	SYNONYMOUS_CODING IntS11	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4393832	3L_4393832_SNP [dm3] 3L_4393832_SNP [dm6]	C	T	3.317e^-4	0.804	INTRON slow
3L	434920	3L_434920_SNP [dm3] 3L_434920_SNP [dm6]	C	A	3.319e^-4	0.804	UTR_3_PRIME klar UPSTREAM snmRNA:438	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	7009981	3L_7009981_SNP [dm3] 3L_7016881_SNP [dm6]	T	C	3.320e^-4	0.804	INTRON Mp
2R	16977231	2R_16977231_SNP [dm3] 2R_21089726_SNP [dm6]	G	A	3.321e^-4	0.804	SYNONYMOUS_CODING Rbpn-5 DOWNSTREAM Treh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3792810	2L_3792810_SNP [dm3] 2L_3792810_SNP [dm6]	T	G	3.335e^-4	0.804	INTRON CG3921
3R	16785589	3R_16785589_SNP [dm3] 3R_20959867_SNP [dm6]	A	G	3.336e^-4	0.804	INTRON Atpalpha
2L	14212744	2L_14212744_SNP [dm3] 2L_14212744_SNP [dm6]	A	C	3.340e^-4	0.804	INTRON Dyrk2
2R	4580858	2R_4580858_SNP [dm3] 2R_8693353_SNP [dm6]	G	C	3.355e^-4	0.804	UTR_3_PRIME CG8586 DOWNSTREAM CG8586 & 1 other
2L	6411868	2L_6411868_SNP [dm3] 2L_6411868_SNP [dm6]	A	G	3.358e^-4	0.804	UPSTREAM CG13982 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	20526879	X_20526879_SNP [dm3] X_20655852_SNP [dm6]	C	T	3.363e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	22128798	2L_22128798_SNP [dm3] 2L_22128798_SNP [dm6]	A	G	3.369e^-4	0.804	NON_SYNONYMOUS_CODING CycK	TF binding site mE1_TFBS_sens
2R	18020127	2R_18020127_DEL [dm3] 2R_22132622_DEL [dm6]	CATGC	C	3.370e^-4	0.804	INTERGENIC
2L	10787461	2L_10787461_INS [dm3] 2L_10787461_INS [dm6]	T	TT	3.372e^-4	0.804	INTRON CG31869
3R	26525139	3R_26525139_SNP [dm3] 3R_30699417_SNP [dm6]	T	C	3.376e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	11182451	3L_11182451_SNP [dm3] 3L_11189351_SNP [dm6]	A	T	3.376e^-4	0.804	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
2R	19463680	2R_19463680_SNP [dm3] 2R_23576157_SNP [dm6]	G	A	3.383e^-4	0.804	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3143138	2L_3143138_SNP [dm3] 2L_3143138_SNP [dm6]	C	T	3.385e^-4	0.804	INTRON toc	TF binding site mE1_TFBS_inv
3L	671757	3L_671757_SNP [dm3] 3L_671757_SNP [dm6]	C	T	3.392e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	20901650	3L_20901650_SNP [dm3] 3L_20908550_SNP [dm6]	A	G	3.396e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_inv
2L	20298906	2L_20298906_SNP [dm3] 2L_20298906_SNP [dm6]	G	C	3.405e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10378760	2L_10378760_SNP [dm3] 2L_10378760_SNP [dm6]	T	C	3.409e^-4	0.804	NON_SYNONYMOUS_CODING dpr19
2R	11605560	2R_11605560_SNP [dm3] 2R_15718055_SNP [dm6]	T	A	3.409e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	19271482	2R_19271482_SNP [dm3] 2R_23383959_SNP [dm6]	T	C	3.413e^-4	0.804	UPSTREAM CG13551 DOWNSTREAM CG30414 EXON CR44784	TF binding site BDTNP1_TFBS_dl
3R	17303771	3R_17303771_SNP [dm3] 3R_21478049_SNP [dm6]	T	A	3.414e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19931756	X_19931756_INS [dm3] X_20037723_INS [dm6]	T	TGTACATAC	3.415e^-4	0.804	INTRON Dop2R
3L	11967456	3L_11967456_SNP [dm3] 3L_11974356_SNP [dm6]	A	T	3.415e^-4	0.804	UPSTREAM CG42397 & 1 other INTERGENIC
X	6164587	X_6164587_SNP [dm3] X_6270554_SNP [dm6]	A	G	3.422e^-4	0.804	SYNONYMOUS_CODING Spt6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	424444	3L_424444_SNP [dm3] 3L_424444_SNP [dm6]	T	C	3.424e^-4	0.804	INTERGENIC
X	2987823	X_2987823_SNP [dm3] X_3093790_SNP [dm6]	G	A	3.427e^-4	0.804	INTRON kirre	regulatory region REDfly_CRMs
X	16833587	X_16833587_SNP [dm3] X_16939554_SNP [dm6]	G	A	3.432e^-4	0.804	SYNONYMOUS_CODING wus	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5022419	X_5022419_SNP [dm3] X_5128386_SNP [dm6]	A	G	3.437e^-4	0.804	INTRON rg & 1 other
X	19011939	X_19011939_SNP [dm3] X_19117906_SNP [dm6]	C	A	3.446e^-4	0.804	INTERGENIC
3R	6605435	3R_6605435_SNP [dm3] 3R_10779713_SNP [dm6]	A	G	3.458e^-4	0.804	NON_SYNONYMOUS_CODING Desi
3L	6695126	3L_6695126_SNP [dm3] 3L_6702026_SNP [dm6]	G	A	3.461e^-4	0.804	INTRON SP1173
3L	19667126	3L_19667126_SNP [dm3] 3L_19674026_SNP [dm6]	T	C	3.466e^-4	0.804	INTERGENIC
2L	7373237	2L_7373237_SNP [dm3] 2L_7373237_SNP [dm6]	G	A	3.473e^-4	0.804	INTRON Wnt10	TF binding site mE1_TFBS_cad
2R	5672960	2R_5672960_SNP [dm3] 2R_9785455_SNP [dm6]	C	A	3.488e^-4	0.804	INTRON CG1688
3L	6962641	3L_6962641_SNP [dm3] 3L_6969541_SNP [dm6]	C	T	3.500e^-4	0.804	UPSTREAM CG9953 & 1 other INTERGENIC	TF binding site mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx
3L	16447700	3L_16447700_SNP [dm3] 3L_16454600_SNP [dm6]	G	C	3.505e^-4	0.804	INTRON CG33158	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26118636	3R_26118636_SNP [dm3] 3R_30292914_SNP [dm6]	G	T	3.514e^-4	0.804	INTRON hdc
3L	6146285	3L_6146285_SNP [dm3] 3L_6153185_SNP [dm6]	T	C	3.519e^-4	0.804	UPSTREAM Acp65Aa INTERGENIC
3R	8480553	3R_8480553_SNP [dm3] 3R_12654831_SNP [dm6]	T	C	3.521e^-4	0.804	UTR_5_PRIME CG6225 INTRON CG6225	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12631132	2R_12631132_SNP [dm3] 2R_16743627_SNP [dm6]	C	T	3.529e^-4	0.804	DOWNSTREAM Sfp53D INTERGENIC
3R	12956249	3R_12956249_SNP [dm3] 3R_17130527_SNP [dm6]	T	C	3.536e^-4	0.804	UPSTREAM CG17475 DOWNSTREAM CG4053 INTERGENIC	TF binding site mE1_TFBS_cad
3L	15943381	3L_15943381_SNP [dm3] 3L_15950281_SNP [dm6]	G	C	3.536e^-4	0.804	INTRON Pka-C3
2R	17697041	2R_17697041_SNP [dm3] 2R_21809536_SNP [dm6]	G	T	3.562e^-4	0.804	INTERGENIC
3L	10510465	3L_10510465_SNP [dm3] 3L_10517365_SNP [dm6]	A	T	3.562e^-4	0.804	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26328054	3R_26328054_SNP [dm3] 3R_30502332_SNP [dm6]	T	A	3.564e^-4	0.804	INTRON CG31371
X	21947722	X_21947722_SNP [dm3] X_22545886_SNP [dm6]	A	G	3.565e^-4	0.804	INTERGENIC	transposable element FlyBase
2L	18513274	2L_18513274_SNP [dm3] 2L_18513274_SNP [dm6]	G	A	3.568e^-4	0.804	SYNONYMOUS_CODING CG10178
3L	7948778	3L_7948778_SNP [dm3] 3L_7955678_SNP [dm6]	G	A	3.576e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26929213	3R_26929213_SNP [dm3] 3R_31103491_SNP [dm6]	A	C	3.581e^-4	0.804	INTERGENIC
3R	16099306	3R_16099306_SNP [dm3] 3R_20273584_SNP [dm6]	A	G	3.583e^-4	0.804	INTRON cic
3R	19693949	3R_19693949_SNP [dm3] 3R_23868227_SNP [dm6]	C	T	3.585e^-4	0.804	INTRON Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3R	14972872	3R_14972872_SNP [dm3] 3R_19147150_SNP [dm6]	G	T	3.588e^-4	0.804	SYNONYMOUS_CODING Ppcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	836445	3L_836445_SNP [dm3] 3L_836445_SNP [dm6]	A	C	3.592e^-4	0.804	SYNONYMOUS_CODING CG42554 DOWNSTREAM CG42553 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	3362014	2L_3362014_SNP [dm3] 2L_3362014_SNP [dm6]	A	T	3.597e^-4	0.804	INTRON CG34394
3L	4393834	3L_4393834_SNP [dm3] 3L_4393834_SNP [dm6]	C	T	3.600e^-4	0.804	INTRON slow
3R	1698167	3R_1698167_SNP [dm3] 3R_5872445_SNP [dm6]	C	T	3.600e^-4	0.804	INTRON CG34113
3R	1011227	3R_1011227_SNP [dm3] 3R_5185505_SNP [dm6]	C	A	3.602e^-4	0.804	INTRON cno
2R	20197109	2R_20197109_DEL [dm3] 2R_24309586_DEL [dm6]	GG	G	3.602e^-4	0.804	INTRON betaTub60D	regulatory region REDfly_CRMs
2L	13079572	2L_13079572_SNP [dm3] 2L_13079572_SNP [dm6]	T	A	3.607e^-4	0.804	INTERGENIC
3R	24132555	3R_24132555_SNP [dm3] 3R_28306833_SNP [dm6]	A	G	3.616e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	20397403	X_20397403_SNP [dm3] X_20526376_SNP [dm6]	C	T	3.620e^-4	0.804	INTERGENIC
2L	20268871	2L_20268871_SNP [dm3] 2L_20268871_SNP [dm6]	A	G	3.620e^-4	0.804	INTERGENIC
2L	16759323	2L_16759323_SNP [dm3] 2L_16759323_SNP [dm6]	C	T	3.620e^-4	0.804	INTRON ppk17
2L	10488814	2L_10488814_SNP [dm3] 2L_10488814_SNP [dm6]	A	T	3.630e^-4	0.804	UTR_5_PRIME CG6144 UPSTREAM CG6144 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	27493543	3R_27493543_SNP [dm3] 3R_31667821_SNP [dm6]	C	T	3.630e^-4	0.804	INTERGENIC
2R	15464329	2R_15464329_SNP [dm3] 2R_19576824_SNP [dm6]	T	A	3.635e^-4	0.804	INTRON sm
3L	11922610	3L_11922610_SNP [dm3] 3L_11929510_SNP [dm6]	T	C	3.640e^-4	0.804	INTRON CG44837 & 1 other
3L	16436332	3L_16436332_SNP [dm3] 3L_16443232_SNP [dm6]	G	A	3.643e^-4	0.804	INTRON CG33158 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5913732	2L_5913732_SNP [dm3] 2L_5913732_SNP [dm6]	C	T	3.646e^-4	0.804	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_cad
2R	17696882	2R_17696882_SNP [dm3] 2R_21809377_SNP [dm6]	A	G	3.647e^-4	0.804	INTERGENIC
2L	100060	2L_100060_SNP [dm3] 2L_100060_SNP [dm6]	C	T	3.651e^-4	0.804	SYNONYMOUS_CODING Zir
2L	17246981	2L_17246981_SNP [dm3] 2L_17246981_SNP [dm6]	G	T	3.653e^-4	0.804	UPSTREAM CR44395 & 1 other INTRON beat-IIIc
3L	14817116	3L_14817116_SNP [dm3] 3L_14824016_SNP [dm6]	A	T	3.653e^-4	0.804	INTRON CG17839
2R	15838903	2R_15838903_SNP [dm3] 2R_19951398_SNP [dm6]	A	C	3.653e^-4	0.804	UTR_5_PRIME CG10822
3R	22063272	3R_22063272_SNP [dm3] 3R_26237550_SNP [dm6]	A	G	3.655e^-4	0.804	INTRON CR42745
3R	17039203	3R_17039203_SNP [dm3] 3R_21213481_SNP [dm6]	T	C	3.665e^-4	0.804	UTR_3_PRIME SNF4Agamma DOWNSTREAM SNF4Agamma
2R	7842869	2R_7842869_SNP [dm3] 2R_11955364_SNP [dm6]	T	A	3.665e^-4	0.804	INTRON CG13188
3R	20830301	3R_20830301_SNP [dm3] 3R_25004579_SNP [dm6]	A	G	3.670e^-4	0.804	INTRON tnc	TF binding site mE1_TFBS_chinmo
X	7746118	X_7746118_SNP [dm3] X_7852085_SNP [dm6]	C	T	3.671e^-4	0.804	DOWNSTREAM CG10920 INTERGENIC
3R	26642118	3R_26642118_SNP [dm3] 3R_30816396_SNP [dm6]	C	G	3.671e^-4	0.804	INTRON cindr
3L	17809894	3L_17809894_SNP [dm3] 3L_17816794_SNP [dm6]	A	G	3.677e^-4	0.804	SYNONYMOUS_CODING Ir75a
X	17432590	X_17432590_SNP [dm3] X_17538557_SNP [dm6]	G	C	3.679e^-4	0.804	INTRON CG43658
2R	16361686	2R_16361686_SNP [dm3] 2R_20474181_SNP [dm6]	T	C	3.684e^-4	0.804	INTRON CG12484
2L	5776362	2L_5776362_SNP [dm3] 2L_5776362_SNP [dm6]	A	C	3.689e^-4	0.804	INTRON CG9171
3L	12039237	3L_12039237_DEL [dm3] 3L_12046137_DEL [dm6]	GCCGTCTAATTATGTTAAAT...	G	3.691e^-4	0.804	DOWNSTREAM CG43638 INTRON rols
2L	6579716	2L_6579716_SNP [dm3] 2L_6579716_SNP [dm6]	T	G	3.703e^-4	0.804	INTRON CG11319
2L	116183	2L_116183_SNP [dm3] 2L_116183_SNP [dm6]	A	T	3.708e^-4	0.804	UTR_5_PRIME CG13694 UPSTREAM CG13694 DOWNSTREAM CG4822 INTRON CG11455	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	10488805	2L_10488805_SNP [dm3] 2L_10488805_SNP [dm6]	T	A	3.715e^-4	0.804	UTR_5_PRIME CG6144 UPSTREAM CG6144 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	8478757	3R_8478757_SNP [dm3] 3R_12653035_SNP [dm6]	A	G	3.719e^-4	0.804	DOWNSTREAM Dtg INTERGENIC
3L	2388326	3L_2388326_INS [dm3] 3L_2388326_INS [dm6]	A	AA	3.722e^-4	0.804	UTR_5_PRIME CG45186 UPSTREAM CG42787 INTRON CG45186	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	485603	3L_485603_SNP [dm3] 3L_485603_SNP [dm6]	A	T	3.727e^-4	0.804	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	702556	3L_702556_SNP [dm3] 3L_702556_SNP [dm6]	T	A	3.732e^-4	0.804	INTERGENIC
2R	6000100	2R_6000100_SNP [dm3] 2R_10112595_SNP [dm6]	A	T	3.734e^-4	0.804	INTRON Pfk
2L	5548115	2L_5548115_SNP [dm3] 2L_5548115_SNP [dm6]	C	T	3.736e^-4	0.804	INTRON Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	10364712	3L_10364712_SNP [dm3] 3L_10371612_SNP [dm6]	C	T	3.737e^-4	0.804	INTERGENIC
3L	10713355	3L_10713355_SNP [dm3] 3L_10720255_SNP [dm6]	G	A	3.740e^-4	0.804	INTERGENIC
2L	19924745	2L_19924745_SNP [dm3] 2L_19924745_SNP [dm6]	C	T	3.747e^-4	0.804	INTRON sick
3L	14213579	3L_14213579_DEL [dm3] 3L_14220479_DEL [dm6]	TT	T	3.751e^-4	0.804	UPSTREAM nuf INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13965313	3R_13965313_SNP [dm3] 3R_18139591_SNP [dm6]	C	T	3.757e^-4	0.804	INTERGENIC
2L	21003601	2L_21003601_SNP [dm3] 2L_21003601_SNP [dm6]	G	A	3.773e^-4	0.804	INTRON CG42238	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2R	8137206	2R_8137206_SNP [dm3] 2R_12249701_SNP [dm6]	T	C	3.777e^-4	0.804	INTERGENIC
3L	515840	3L_515840_DEL [dm3] 3L_515840_DEL [dm6]	AA	A	3.786e^-4	0.804	INTRON klar
2R	11718366	2R_11718366_SNP [dm3] 2R_15830861_SNP [dm6]	G	C	3.786e^-4	0.804	INTRON tun & 1 other	regulatory region REDfly_CRMs
3R	10440428	3R_10440428_SNP [dm3] 3R_14614706_SNP [dm6]	C	T	3.787e^-4	0.804	INTRON CG14853
2L	855241	2L_855241_SNP [dm3] 2L_855241_SNP [dm6]	T	C	3.788e^-4	0.804	UPSTREAM CG13949 DOWNSTREAM kraken INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	17693174	2R_17693174_SNP [dm3] 2R_21805669_SNP [dm6]	T	A	3.789e^-4	0.804	INTERGENIC
2L	5495429	2L_5495429_SNP [dm3] 2L_5495429_SNP [dm6]	G	T	3.800e^-4	0.804	INTERGENIC
3L	3188432	3L_3188432_SNP [dm3] 3L_3188432_SNP [dm6]	T	A	3.810e^-4	0.804	NON_SYNONYMOUS_CODING CG42525 DOWNSTREAM CG14957
3L	6086529	3L_6086529_SNP [dm3] 3L_6093429_SNP [dm6]	A	C	3.811e^-4	0.804	NON_SYNONYMOUS_CODING CG10467 UPSTREAM CG10469
2R	16458924	2R_16458924_SNP [dm3] 2R_20571419_SNP [dm6]	T	A	3.812e^-4	0.804	INTRON qsm
3R	26445793	3R_26445793_SNP [dm3] 3R_30620071_SNP [dm6]	G	C	3.812e^-4	0.804	INTRON CG44954
3L	12632285	3L_12632285_SNP [dm3] 3L_12639185_SNP [dm6]	C	T	3.814e^-4	0.804	INTRON CR32111
3R	25563119	3R_25563119_SNP [dm3] 3R_29737397_SNP [dm6]	G	C	3.818e^-4	0.804	SYNONYMOUS_CODING CG7598 UPSTREAM CG7601 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	15444033	2R_15444033_SNP [dm3] 2R_19556528_SNP [dm6]	G	A	3.818e^-4	0.804	INTRON sm
X	3950407	X_3950407_SNP [dm3] X_4056374_SNP [dm6]	G	C	3.831e^-4	0.804	INTERGENIC
X	3950413	X_3950413_SNP [dm3] X_4056380_SNP [dm6]	C	A	3.831e^-4	0.804	INTERGENIC
3R	25574890	3R_25574890_SNP [dm3] 3R_29749168_SNP [dm6]	A	T	3.832e^-4	0.804	UPSTREAM yata & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	112601	2L_112601_SNP [dm3] 2L_112601_SNP [dm6]	T	A	3.842e^-4	0.804	INTRON Sam-S
3R	25540223	3R_25540223_SNP [dm3] 3R_29714501_SNP [dm6]	C	T	3.844e^-4	0.804	UPSTREAM Obp99d & 1 other DOWNSTREAM Dup99B INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	25565874	3R_25565874_SNP [dm3] 3R_29740152_SNP [dm6]	T	G	3.848e^-4	0.804	UPSTREAM CG1969 INTRON CG1969	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	20300823	2L_20300823_SNP [dm3] 2L_20300823_SNP [dm6]	C	T	3.852e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	18513442	2L_18513442_INS [dm3] 2L_18513442_INS [dm6]	G	GG	3.866e^-4	0.804	UTR_3_PRIME CG10178
3L	3113362	3L_3113362_SNP [dm3] 3L_3113362_SNP [dm6]	C	A	3.873e^-4	0.804	NON_SYNONYMOUS_CODING CG45067
3L	4898488	3L_4898488_INS [dm3] 3L_4898488_INS [dm6]	T	TTT	3.875e^-4	0.804	UPSTREAM CG13704 DOWNSTREAM CG13705 INTERGENIC
2L	18848396	2L_18848396_SNP [dm3] 2L_18848396_SNP [dm6]	T	A	3.876e^-4	0.804	INTRON CG17321
2L	5165417	2L_5165417_SNP [dm3] 2L_5165417_SNP [dm6]	A	T	3.886e^-4	0.804	SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	3397468	3L_3397468_SNP [dm3] 3L_3397468_SNP [dm6]	G	C	3.887e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	4924712	3L_4924712_SNP [dm3] 3L_4924712_SNP [dm6]	C	A	3.889e^-4	0.804	INTERGENIC
3L	20909376	3L_20909376_SNP [dm3] 3L_20916276_SNP [dm6]	T	A	3.907e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10862432	3L_10862432_SNP [dm3] 3L_10869332_SNP [dm6]	T	G	3.909e^-4	0.804	UPSTREAM tna INTRON tna
X	20851447	X_20851447_SNP [dm3] X_20980420_SNP [dm6]	C	T	3.913e^-4	0.804	INTERGENIC
X	15680481	X_15680481_SNP [dm3] X_15786448_SNP [dm6]	G	T	3.914e^-4	0.804	NON_SYNONYMOUS_CODING mRpS30 UPSTREAM Paf-AHalpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5167867	2L_5167867_SNP [dm3] 2L_5167867_SNP [dm6]	C	T	3.918e^-4	0.804	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
X	20554770	X_20554770_SNP [dm3] X_20683743_SNP [dm6]	C	G	3.921e^-4	0.804	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
2R	18921877	2R_18921877_INS [dm3] 2R_23034354_INS [dm6]	C	CGGTATA	3.926e^-4	0.804	INTRON twi & 1 other	TF binding site mE1_TFBS_cad
3L	4393836	3L_4393836_SNP [dm3] 3L_4393836_SNP [dm6]	A	T	3.928e^-4	0.804	INTRON slow
2R	11772430	2R_11772430_SNP [dm3] 2R_15884925_SNP [dm6]	T	A	3.936e^-4	0.804	INTRON sli
3L	6837834	3L_6837834_SNP [dm3] 3L_6844734_SNP [dm6]	T	C	3.937e^-4	0.804	INTERGENIC
3R	8477836	3R_8477836_SNP [dm3] 3R_12652114_SNP [dm6]	C	A	3.939e^-4	0.804	NON_SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_sens
3R	26919379	3R_26919379_SNP [dm3] 3R_31093657_SNP [dm6]	G	T	3.940e^-4	0.804	INTRON CG11317
3R	1705378	3R_1705378_SNP [dm3] 3R_5879656_SNP [dm6]	T	G	3.944e^-4	0.804	SYNONYMOUS_CODING CG34113 INTRON CG34113
X	21947765	X_21947765_SNP [dm3] X_22545929_SNP [dm6]	C	T	3.964e^-4	0.804	INTERGENIC
3L	5215507	3L_5215507_SNP [dm3] 3L_5222407_SNP [dm6]	T	C	3.965e^-4	0.804	INTRON shep
2L	20283968	2L_20283968_SNP [dm3] 2L_20283968_SNP [dm6]	G	A	3.968e^-4	0.804	INTERGENIC
3R	25563726	3R_25563726_SNP [dm3] 3R_29738004_SNP [dm6]	T	A	3.968e^-4	0.804	UTR_3_PRIME CG7598 UPSTREAM CG1969	TF binding site BDTNP1_TFBS_dl
2L	10495996	2L_10495996_SNP [dm3] 2L_10495996_SNP [dm6]	C	G	3.973e^-4	0.804	INTRON Myo31DF
X	20527426	X_20527426_SNP [dm3] X_20656399_SNP [dm6]	A	G	3.978e^-4	0.804	UPSTREAM Cyp6v1 DOWNSTREAM CR45466 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16202334	3L_16202334_SNP [dm3] 3L_16209234_SNP [dm6]	A	T	3.979e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_cad
3R	24693993	3R_24693993_SNP [dm3] 3R_28868271_SNP [dm6]	T	C	3.981e^-4	0.804	SYNONYMOUS_CODING spg	TF binding site mE1_TFBS_chinmo
3R	13907007	3R_13907007_SNP [dm3] 3R_18081285_SNP [dm6]	A	T	3.983e^-4	0.804	SYNONYMOUS_CODING CG14317	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	391927	3L_391927_INS [dm3] 3L_391927_INS [dm6]	A	AATTGGAT	3.984e^-4	0.804	DOWNSTREAM CR45378 INTRON trh
2L	14309689	2L_14309689_SNP [dm3] 2L_14309689_SNP [dm6]	T	G	3.985e^-4	0.804	INTRON wb	TF binding site mE1_TFBS_HSA
3R	15214306	3R_15214306_SNP [dm3] 3R_19388584_SNP [dm6]	A	T	3.985e^-4	0.804	SYNONYMOUS_CODING CG3734 INTRON Ino80	TF binding site mE1_TFBS_sens
3R	25797302	3R_25797302_SNP [dm3] 3R_29971580_SNP [dm6]	A	G	3.988e^-4	0.804	INTERGENIC
2L	116032	2L_116032_SNP [dm3] 2L_116032_SNP [dm6]	C	T	4.003e^-4	0.804	NON_SYNONYMOUS_CODING CG13694 DOWNSTREAM CG4822 INTRON CG11455	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8770978	2L_8770978_SNP [dm3] 2L_8770978_SNP [dm6]	T	G	4.006e^-4	0.804	NON_SYNONYMOUS_CODING CG9465	TF binding site mE1_TFBS_sens
3L	10530299	3L_10530299_SNP [dm3] 3L_10537199_SNP [dm6]	T	A	4.015e^-4	0.804	INTRON A2bp1
2R	12818831	2R_12818831_SNP [dm3] 2R_16931326_SNP [dm6]	T	A	4.020e^-4	0.804	INTRON Pkc53E
2L	8931800	2L_8931800_SNP [dm3] 2L_8931800_SNP [dm6]	T	G	4.023e^-4	0.804	SYNONYMOUS_CODING CG34398 INTRON CG34398
2L	5165765	2L_5165765_SNP [dm3] 2L_5165765_SNP [dm6]	G	A	4.024e^-4	0.804	SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	6962625	3L_6962625_SNP [dm3] 3L_6969525_SNP [dm6]	G	A	4.027e^-4	0.804	UPSTREAM CG9953 & 1 other INTERGENIC	TF binding site mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx
2L	10940556	2L_10940556_DEL [dm3] 2L_10940556_DEL [dm6]	TTATATCCTT	T	4.049e^-4	0.804	INTRON dpr2
3R	8638979	3R_8638979_SNP [dm3] 3R_12813257_SNP [dm6]	C	G	4.051e^-4	0.804	INTRON CG31345
3L	417033	3L_417033_SNP [dm3] 3L_417033_SNP [dm6]	G	A	4.052e^-4	0.804	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20287119	2L_20287119_SNP [dm3] 2L_20287119_SNP [dm6]	C	T	4.053e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24302492	3R_24302492_SNP [dm3] 3R_28476770_SNP [dm6]	C	A	4.053e^-4	0.804	INTERGENIC
3L	22110256	3L_22110256_SNP [dm3] 3L_22117156_SNP [dm6]	G	T	4.079e^-4	0.804	INTERGENIC
2L	5766942	2L_5766942_INS [dm3] 2L_5766942_INS [dm6]	A	AA	4.086e^-4	0.804	UPSTREAM obst-E DOWNSTREAM CG9171 INTERGENIC
3L	10688591	3L_10688591_SNP [dm3] 3L_10695491_SNP [dm6]	A	G	4.087e^-4	0.804	INTRON NijA
3L	10688603	3L_10688603_SNP [dm3] 3L_10695503_SNP [dm6]	A	T	4.087e^-4	0.804	INTRON NijA
3R	15073405	3R_15073405_SNP [dm3] 3R_19247683_SNP [dm6]	C	G	4.097e^-4	0.804	INTRON CG5217
3R	5884199	3R_5884199_SNP [dm3] 3R_10058477_SNP [dm6]	A	C	4.102e^-4	0.804	INTERGENIC
3L	9990656	3L_9990656_SNP [dm3] 3L_9997556_SNP [dm6]	A	G	4.108e^-4	0.804	INTRON dpr6
2L	1551690	2L_1551690_SNP [dm3] 2L_1551690_SNP [dm6]	T	C	4.117e^-4	0.804	INTERGENIC
3R	11012506	3R_11012506_SNP [dm3] 3R_15186784_SNP [dm6]	C	A	4.130e^-4	0.804	SYNONYMOUS_CODING Gyc88E
2R	15839563	2R_15839563_SNP [dm3] 2R_19952058_SNP [dm6]	C	T	4.130e^-4	0.804	DOWNSTREAM CG10822 INTERGENIC
2L	17490524	2L_17490524_SNP [dm3] 2L_17490524_SNP [dm6]	C	A	4.135e^-4	0.804	INTRON qua
3L	838809	3L_838809_SNP [dm3] 3L_838809_SNP [dm6]	C	A	4.136e^-4	0.804	UPSTREAM CG13901 INTRON CG13887	TF binding site mE1_TFBS_inv
3R	17071476	3R_17071476_SNP [dm3] 3R_21245754_SNP [dm6]	T	A	4.139e^-4	0.804	DOWNSTREAM CG5892 INTERGENIC
3R	25562537	3R_25562537_SNP [dm3] 3R_29736815_SNP [dm6]	C	A	4.140e^-4	0.804	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	9143647	2R_9143647_SNP [dm3] 2R_13256142_SNP [dm6]	C	T	4.144e^-4	0.804	UPSTREAM CR44343 & 1 other INTERGENIC
3L	20523947	3L_20523947_SNP [dm3] 3L_20530847_SNP [dm6]	C	T	4.145e^-4	0.804	INTRON Rcd2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23285396	3R_23285396_SNP [dm3] 3R_27459674_SNP [dm6]	A	C	4.149e^-4	0.804	INTERGENIC
2L	6739034	2L_6739034_SNP [dm3] 2L_6739034_SNP [dm6]	C	T	4.152e^-4	0.804	SYNONYMOUS_CODING TTLL3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17778179	3L_17778179_SNP [dm3] 3L_17785079_SNP [dm6]	G	C	4.152e^-4	0.804	EXON CR44668
2L	20289615	2L_20289615_SNP [dm3] 2L_20289615_SNP [dm6]	C	T	4.152e^-4	0.804	INTERGENIC
2L	20289626	2L_20289626_SNP [dm3] 2L_20289626_SNP [dm6]	A	G	4.152e^-4	0.804	INTERGENIC
X	14511435	X_14511435_SNP [dm3] X_14617402_SNP [dm6]	A	T	4.159e^-4	0.804	INTRON NetA
3R	12972892	3R_12972892_SNP [dm3] 3R_17147170_SNP [dm6]	C	T	4.163e^-4	0.804	SYNONYMOUS_CODING m-cup
2L	2735393	2L_2735393_SNP [dm3] 2L_2735393_SNP [dm6]	C	A	4.174e^-4	0.804	UPSTREAM CG31689 INTRON CG31689
2R	6284161	2R_6284161_SNP [dm3] 2R_10396656_SNP [dm6]	T	G	4.176e^-4	0.804	INTRON CG42732
2L	8372209	2L_8372209_SNP [dm3] 2L_8372209_SNP [dm6]	G	A	4.179e^-4	0.804	UPSTREAM CG17292 INTRON CG17292
3L	22045618	3L_22045618_SNP [dm3] 3L_22052518_SNP [dm6]	T	A	4.186e^-4	0.804	INTRON Oct-TyrR
X	20240140	X_20240140_SNP [dm3] X_20369113_SNP [dm6]	T	C	4.187e^-4	0.804	INTERGENIC
3R	8494403	3R_8494403_SNP [dm3] 3R_12668681_SNP [dm6]	G	T	4.197e^-4	0.804	UTR_5_PRIME CG14395
3R	8839539	3R_8839539_DEL [dm3] 3R_13013817_DEL [dm6]	CAAC	C	4.200e^-4	0.804	INTRON CtBP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26269238	3R_26269238_DEL [dm3] 3R_30443516_DEL [dm6]	AA	A	4.203e^-4	0.804	UTR_5_PRIME CG15537 DOWNSTREAM Osi23
3R	18697135	3R_18697135_SNP [dm3] 3R_22871413_SNP [dm6]	T	C	4.205e^-4	0.804	INTERGENIC
3R	26671686	3R_26671686_SNP [dm3] 3R_30845964_SNP [dm6]	T	A	4.206e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	20721640	3R_20721640_SNP [dm3] 3R_24895918_SNP [dm6]	C	T	4.211e^-4	0.804	NON_SYNONYMOUS_CODING CG11069
X	18738475	X_18738475_SNP [dm3] X_18844442_SNP [dm6]	G	T	4.213e^-4	0.804	INTRON CG34422	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
2L	8612050	2L_8612050_SNP [dm3] 2L_8612050_SNP [dm6]	T	C	4.215e^-4	0.804	INTRON Sema-1a
3L	22117815	3L_22117815_SNP [dm3] 3L_22124715_SNP [dm6]	C	T	4.217e^-4	0.804	INTERGENIC
X	4206654	X_4206654_SNP [dm3] X_4312621_SNP [dm6]	G	A	4.218e^-4	0.804	UPSTREAM CG15579 INTRON CR44957
2L	16380525	2L_16380525_SNP [dm3] 2L_16380525_SNP [dm6]	T	G	4.223e^-4	0.804	INTERGENIC
3L	5397525	3L_5397525_SNP [dm3] 3L_5404425_SNP [dm6]	A	T	4.225e^-4	0.804	INTERGENIC
2R	18796668	2R_18796668_SNP [dm3] 2R_22909145_SNP [dm6]	G	A	4.225e^-4	0.804	INTRON nahoda
2L	7373235	2L_7373235_SNP [dm3] 2L_7373235_SNP [dm6]	C	T	4.225e^-4	0.804	INTRON Wnt10	TF binding site mE1_TFBS_cad
3L	7948802	3L_7948802_SNP [dm3] 3L_7955702_SNP [dm6]	A	G	4.228e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	14158510	X_14158510_SNP [dm3] X_14264477_SNP [dm6]	A	C	4.229e^-4	0.804	SYNONYMOUS_CODING CG1461 DOWNSTREAM CG13404
2R	9204851	2R_9204851_SNP [dm3] 2R_13317346_SNP [dm6]	G	C	4.229e^-4	0.804	INTERGENIC
2L	13440560	2L_13440560_SNP [dm3] 2L_13440560_SNP [dm6]	G	T	4.230e^-4	0.804	DOWNSTREAM Tehao INTRON CG42784 EXON CR45683	TF binding site mE1_TFBS_inv
X	8697140	X_8697140_SNP [dm3] X_8803107_SNP [dm6]	T	C	4.233e^-4	0.804	INTRON Lim1
2R	11718259	2R_11718259_SNP [dm3] 2R_15830754_SNP [dm6]	G	T	4.235e^-4	0.804	INTRON tun & 1 other	regulatory region REDfly_CRMs
2L	13753330	2L_13753330_SNP [dm3] 2L_13753330_SNP [dm6]	A	G	4.238e^-4	0.804	INTRON CR44846 & 1 other
3R	26446083	3R_26446083_SNP [dm3] 3R_30620361_SNP [dm6]	T	C	4.239e^-4	0.804	INTRON CG44954
2L	19244089	2L_19244089_SNP [dm3] 2L_19244089_SNP [dm6]	T	C	4.246e^-4	0.804	INTERGENIC
3R	26195106	3R_26195106_SNP [dm3] 3R_30369384_SNP [dm6]	A	T	4.249e^-4	0.804	UTR_3_PRIME hdc
3R	13934848	3R_13934848_SNP [dm3] 3R_18109126_SNP [dm6]	T	A	4.254e^-4	0.804	DOWNSTREAM tRNA:CR31242 & 1 other INTRON sr
3R	18185774	3R_18185774_SNP [dm3] 3R_22360052_SNP [dm6]	G	A	4.256e^-4	0.804	UTR_3_PRIME Sar1 DOWNSTREAM PSR
3R	24713628	3R_24713628_SNP [dm3] 3R_28887906_SNP [dm6]	A	T	4.257e^-4	0.804	UPSTREAM Doa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	5165676	2L_5165676_SNP [dm3] 2L_5165676_SNP [dm6]	G	T	4.262e^-4	0.804	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2R	17062138	2R_17062138_SNP [dm3] 2R_21174633_SNP [dm6]	T	A	4.271e^-4	0.804	UPSTREAM Pu DOWNSTREAM Xpd INTERGENIC
3R	15213970	3R_15213970_SNP [dm3] 3R_19388248_SNP [dm6]	C	A	4.274e^-4	0.804	DOWNSTREAM CR34285 INTRON Ino80 & 1 other	TF binding site mE1_TFBS_sens
3R	5963181	3R_5963181_SNP [dm3] 3R_10137459_SNP [dm6]	T	A	4.279e^-4	0.804	INTRON tws
3R	10412814	3R_10412814_SNP [dm3] 3R_14587092_SNP [dm6]	C	G	4.279e^-4	0.804	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24901138	3R_24901138_SNP [dm3] 3R_29075416_SNP [dm6]	G	A	4.281e^-4	0.804	INTRON CG11873	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3L	20931158	3L_20931158_SNP [dm3] 3L_20938058_SNP [dm6]	A	G	4.298e^-4	0.807	INTRON fng
2R	7333266	2R_7333266_SNP [dm3] 2R_11445761_SNP [dm6]	T	C	4.307e^-4	0.807	INTRON qvr

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.072e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.02037

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	7.9499	0.0188

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1917 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	15841000	2R_15841000_SNP [dm3] 2R_19953495_SNP [dm6]	G	A	1.801e^-6	0.92	UPSTREAM CG44622 INTERGENIC
3R	27194404	3R_27194404_SNP [dm3] 3R_31368682_SNP [dm6]	A	C	2.146e^-6	0.92	INTRON CG34347
3L	11728415	3L_11728415_SNP [dm3] 3L_11735315_SNP [dm6]	C	T	2.196e^-6	0.92	UTR_3_PRIME CG6024 DOWNSTREAM CG6024
3R	26195343	3R_26195343_SNP [dm3] 3R_30369621_SNP [dm6]	T	A	2.612e^-6	0.92	UTR_3_PRIME hdc
2L	13325482	2L_13325482_SNP [dm3] 2L_13325482_SNP [dm6]	C	A	2.842e^-6	0.92	INTRON CG43778
2R	15841021	2R_15841021_SNP [dm3] 2R_19953516_SNP [dm6]	C	T	3.377e^-6	0.92	UPSTREAM CG44622 INTERGENIC
2R	15839488	2R_15839488_DEL [dm3] 2R_19951983_DEL [dm6]	GC	G	3.487e^-6	0.92	DOWNSTREAM CG10822 INTERGENIC
3R	14977420	3R_14977420_SNP [dm3] 3R_19151698_SNP [dm6]	C	A	3.925e^-6	0.92	INTRON CG5835
3L	14811233	3L_14811233_SNP [dm3] 3L_14818133_SNP [dm6]	C	T	5.330e^-6	0.925	INTRON CG17839
X	21112733	X_21112733_SNP [dm3] X_21241706_SNP [dm6]	T	C	7.301e^-6	0.925	INTRON CG32521
3L	7480629	3L_7480629_SNP [dm3] 3L_7487529_SNP [dm6]	C	T	9.044e^-6	0.925	INTRON mthl6
2R	15839481	2R_15839481_SNP [dm3] 2R_19951976_SNP [dm6]	C	G	9.783e^-6	0.925	DOWNSTREAM CG10822 INTERGENIC
3L	20566729	3L_20566729_SNP [dm3] 3L_20573629_SNP [dm6]	A	T	9.868e^-6	0.925	INTERGENIC
2L	5548115	2L_5548115_SNP [dm3] 2L_5548115_SNP [dm6]	C	T	9.937e^-6	0.925	INTRON Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	3473943	3L_3473943_SNP [dm3] 3L_3473943_SNP [dm6]	A	T	1.086e^-5	0.925	INTRON CG42324
X	16055145	X_16055145_SNP [dm3] X_16161112_SNP [dm6]	A	T	1.088e^-5	0.925	INTERGENIC
2L	4578862	2L_4578862_SNP [dm3] 2L_4578862_SNP [dm6]	G	A	1.471e^-5	0.925	UPSTREAM HP6 INTRON dp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18745569	2L_18745569_SNP [dm3] 2L_18745569_SNP [dm6]	G	A	1.507e^-5	0.925	INTERGENIC
3R	11249569	3R_11249569_SNP [dm3] 3R_15423847_SNP [dm6]	G	A	1.711e^-5	0.925	SYNONYMOUS_CODING CG6118	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2531643	3L_2531643_SNP [dm3] 3L_2531643_SNP [dm6]	T	A	1.908e^-5	0.925	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	12147909	2L_12147909_SNP [dm3] 2L_12147909_SNP [dm6]	A	G	1.948e^-5	0.925	INTRON CG31760
3L	6699506	3L_6699506_SNP [dm3] 3L_6706406_SNP [dm6]	C	T	1.973e^-5	0.925	INTRON CG8519
2L	4276712	2L_4276712_SNP [dm3] 2L_4276712_SNP [dm6]	C	T	2.005e^-5	0.925	DOWNSTREAM Art2 INTERGENIC
2L	19788624	2L_19788624_SNP [dm3] 2L_19788624_SNP [dm6]	A	T	2.026e^-5	0.925	INTRON CdGAPr
3L	2531631	3L_2531631_SNP [dm3] 3L_2531631_SNP [dm6]	A	C	2.035e^-5	0.925	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	7151754	3L_7151754_SNP [dm3] 3L_7158654_SNP [dm6]	G	A	2.178e^-5	0.925	SYNONYMOUS_CODING CG8620 UTR_3_PRIME CG8620 DOWNSTREAM Dscam2
3L	16436332	3L_16436332_SNP [dm3] 3L_16443232_SNP [dm6]	G	A	2.322e^-5	0.925	INTRON CG33158 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15838613	2R_15838613_SNP [dm3] 2R_19951108_SNP [dm6]	G	A	2.347e^-5	0.925	UPSTREAM CG10822 INTERGENIC
2L	2739080	2L_2739080_SNP [dm3] 2L_2739080_SNP [dm6]	A	C	2.484e^-5	0.925	UPSTREAM Hrs INTRON CG31689
X	4645841	X_4645841_SNP [dm3] X_4751808_SNP [dm6]	G	A	2.504e^-5	0.925	INTERGENIC
2L	3365144	2L_3365144_SNP [dm3] 2L_3365144_SNP [dm6]	A	G	2.964e^-5	0.925	UTR_5_PRIME CG34394 INTRON CG34394
3L	1740510	3L_1740510_SNP [dm3] 3L_1740510_SNP [dm6]	C	A	2.988e^-5	0.925	INTRON Gk
2R	4580858	2R_4580858_SNP [dm3] 2R_8693353_SNP [dm6]	G	C	2.990e^-5	0.925	UTR_3_PRIME CG8586 DOWNSTREAM CG8586 & 1 other
X	5462305	X_5462305_INS [dm3] X_5568272_INS [dm6]	A	ACACA	3.030e^-5	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	15840879	2R_15840879_SNP [dm3] 2R_19953374_SNP [dm6]	A	T	3.035e^-5	0.925	UPSTREAM CG44622 INTERGENIC
2R	15256886	2R_15256886_SNP [dm3] 2R_19369381_SNP [dm6]	C	T	3.059e^-5	0.925	INTRON CG9416
X	7216854	X_7216854_SNP [dm3] X_7322821_SNP [dm6]	C	A	3.060e^-5	0.925	INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	13968539	3R_13968539_SNP [dm3] 3R_18142817_SNP [dm6]	C	T	3.064e^-5	0.925	INTERGENIC
X	7216373	X_7216373_SNP [dm3] X_7322340_SNP [dm6]	A	T	3.083e^-5	0.925	INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	7216824	X_7216824_SNP [dm3] X_7322791_SNP [dm6]	T	G	3.083e^-5	0.925	INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	7216886	X_7216886_SNP [dm3] X_7322853_SNP [dm6]	A	G	3.083e^-5	0.925	INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	7216905	X_7216905_SNP [dm3] X_7322872_SNP [dm6]	G	A	3.083e^-5	0.925	INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	709632	2L_709632_SNP [dm3] 2L_709632_SNP [dm6]	G	T	3.157e^-5	0.925	UPSTREAM CR44988 INTRON ds
3R	25021122	3R_25021122_SNP [dm3] 3R_29195400_SNP [dm6]	G	A	3.233e^-5	0.925	UPSTREAM CG14509 INTERGENIC
2L	8613042	2L_8613042_SNP [dm3] 2L_8613042_SNP [dm6]	C	T	3.262e^-5	0.925	INTRON Sema-1a
3L	14812640	3L_14812640_SNP [dm3] 3L_14819540_SNP [dm6]	G	A	3.285e^-5	0.925	INTRON CG17839
2R	14526858	2R_14526858_SNP [dm3] 2R_18639353_SNP [dm6]	G	A	3.307e^-5	0.925	UPSTREAM tRNA:CR30227 & 2 others DOWNSTREAM tRNA:G3:55E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	14623513	3R_14623513_SNP [dm3] 3R_18797791_SNP [dm6]	T	C	3.346e^-5	0.925	INTERGENIC
3R	14623430	3R_14623430_SNP [dm3] 3R_18797708_SNP [dm6]	A	G	3.351e^-5	0.925	INTERGENIC
2R	6280663	2R_6280663_SNP [dm3] 2R_10393158_SNP [dm6]	C	T	3.390e^-5	0.925	INTRON CG42732
2L	18513442	2L_18513442_INS [dm3] 2L_18513442_INS [dm6]	G	GG	3.446e^-5	0.925	UTR_3_PRIME CG10178
X	7216405	X_7216405_SNP [dm3] X_7322372_SNP [dm6]	C	T	3.589e^-5	0.925	NON_SYNONYMOUS_CODING Atg5 INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15917599	2R_15917599_SNP [dm3] 2R_20030094_SNP [dm6]	A	G	3.632e^-5	0.925	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	19932654	X_19932654_SNP [dm3] X_20038621_SNP [dm6]	A	T	3.635e^-5	0.925	INTRON Dop2R
3L	8449205	3L_8449205_SNP [dm3] 3L_8456105_SNP [dm6]	A	T	3.655e^-5	0.925	INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5550121	2L_5550121_SNP [dm3] 2L_5550121_SNP [dm6]	A	G	3.680e^-5	0.925	SYNONYMOUS_CODING CG14014 DOWNSTREAM Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11725003	3L_11725003_SNP [dm3] 3L_11731903_SNP [dm6]	A	C	3.752e^-5	0.925	NON_SYNONYMOUS_CODING CG32088 UPSTREAM CG32087
X	21063578	X_21063578_SNP [dm3] X_21192551_SNP [dm6]	G	A	3.801e^-5	0.925	UPSTREAM CG14579 INTERGENIC
3R	16099306	3R_16099306_SNP [dm3] 3R_20273584_SNP [dm6]	A	G	3.822e^-5	0.925	INTRON cic
3R	24976678	3R_24976678_SNP [dm3] 3R_29150956_SNP [dm6]	T	A	3.871e^-5	0.925	NON_SYNONYMOUS_CODING ligatin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24421845	3R_24421845_SNP [dm3] 3R_28596123_SNP [dm6]	T	G	4.066e^-5	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5550103	2L_5550103_SNP [dm3] 2L_5550103_SNP [dm6]	A	G	4.104e^-5	0.925	SYNONYMOUS_CODING CG14014 DOWNSTREAM Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6498248	X_6498248_SNP [dm3] X_6604215_SNP [dm6]	A	C	4.482e^-5	0.925	INTRON pigs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4425921	3L_4425921_SNP [dm3] 3L_4425921_SNP [dm6]	C	T	4.540e^-5	0.925	INTRON CG15020
2R	17637018	2R_17637018_SNP [dm3] 2R_21749513_SNP [dm6]	C	T	4.586e^-5	0.925	INTERGENIC
2L	5544154	2L_5544154_SNP [dm3] 2L_5544154_SNP [dm6]	A	C	4.647e^-5	0.925	SYNONYMOUS_CODING Lam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	590537	2L_590537_SNP [dm3] 2L_590537_SNP [dm6]	G	C	4.717e^-5	0.925	INTRON Gsc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	10149234	2L_10149234_SNP [dm3] 2L_10149234_SNP [dm6]	C	G	4.960e^-5	0.925	INTRON CG44153 & 1 other
3R	14978386	3R_14978386_SNP [dm3] 3R_19152664_SNP [dm6]	C	T	4.995e^-5	0.925	INTRON CG5835
3L	7866077	3L_7866077_INS [dm3] 3L_7872977_INS [dm6]	A	AA	5.086e^-5	0.925	INTRON CG32365	TF binding site mE1_TFBS_kn
2L	10556464	2L_10556464_SNP [dm3] 2L_10556464_SNP [dm6]	C	A	5.162e^-5	0.925	INTRON Trim9
2L	12723376	2L_12723376_SNP [dm3] 2L_12723376_SNP [dm6]	T	C	5.163e^-5	0.925	NON_SYNONYMOUS_CODING MRP	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_sens
3L	16568951	3L_16568951_SNP [dm3] 3L_16575851_SNP [dm6]	A	G	5.306e^-5	0.925	SYNONYMOUS_CODING mbf1
2R	4583655	2R_4583655_SNP [dm3] 2R_8696150_SNP [dm6]	A	T	5.345e^-5	0.925	UTR_5_PRIME CG8586 UPSTREAM CG8738 & 1 other
X	6498249	X_6498249_SNP [dm3] X_6604216_SNP [dm6]	G	A	5.419e^-5	0.925	INTRON pigs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3527771	3L_3527771_SNP [dm3] 3L_3527771_SNP [dm6]	A	T	5.474e^-5	0.925	INTRON Eip63E
2R	12993899	2R_12993899_SNP [dm3] 2R_17106394_SNP [dm6]	T	C	5.566e^-5	0.925	INTRON CG30456	TF binding site mE1_TFBS_cad
3R	14623497	3R_14623497_SNP [dm3] 3R_18797775_SNP [dm6]	A	T	5.583e^-5	0.925	INTERGENIC
3R	16099329	3R_16099329_SNP [dm3] 3R_20273607_SNP [dm6]	T	C	5.620e^-5	0.925	INTRON cic
2L	5546839	2L_5546839_SNP [dm3] 2L_5546839_SNP [dm6]	T	C	5.658e^-5	0.925	UPSTREAM Oscillin DOWNSTREAM Lam INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	15027231	3L_15027231_SNP [dm3] 3L_15034131_SNP [dm6]	G	C	5.715e^-5	0.925	START_GAINED Sytbeta UTR_5_PRIME Sytbeta INTRON Sytbeta
3L	7948730	3L_7948730_SNP [dm3] 3L_7955630_SNP [dm6]	T	C	5.771e^-5	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20525273	X_20525273_SNP [dm3] X_20654246_SNP [dm6]	G	A	5.938e^-5	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17596807	3L_17596807_SNP [dm3] 3L_17603707_SNP [dm6]	T	A	5.988e^-5	0.925	INTRON Eip74EF
2L	1312145	2L_1312145_SNP [dm3] 2L_1312145_SNP [dm6]	C	T	6.069e^-5	0.925	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	5547552	2L_5547552_SNP [dm3] 2L_5547552_SNP [dm6]	T	A	6.144e^-5	0.925	UTR_5_PRIME Oscillin DOWNSTREAM Lam INTRON Oscillin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	26328523	3R_26328523_SNP [dm3] 3R_30502801_SNP [dm6]	G	A	6.152e^-5	0.925	SYNONYMOUS_CODING CG31371 DOWNSTREAM PH4alphaSG1
3R	14627233	3R_14627233_SNP [dm3] 3R_18801511_SNP [dm6]	A	G	6.248e^-5	0.925	UTR_3_PRIME CG18208
2R	13913384	2R_13913384_SNP [dm3] 2R_18025879_SNP [dm6]	T	A	6.308e^-5	0.925	INTERGENIC
2R	18364054	2R_18364054_SNP [dm3] 2R_22476549_SNP [dm6]	G	A	6.335e^-5	0.925	NON_SYNONYMOUS_CODING CG45063 UPSTREAM CG45062	TF binding site mE1_TFBS_cad
3L	2738235	3L_2738235_SNP [dm3] 3L_2738235_SNP [dm6]	G	C	6.403e^-5	0.925	INTRON Mrtf
2L	1025688	2L_1025688_SNP [dm3] 2L_1025688_SNP [dm6]	G	A	6.425e^-5	0.925	DOWNSTREAM CG4375 INTRON IA-2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17603716	3L_17603716_SNP [dm3] 3L_17610616_SNP [dm6]	T	G	6.463e^-5	0.925	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl
3L	17132695	3L_17132695_SNP [dm3] 3L_17139595_SNP [dm6]	A	G	6.656e^-5	0.925	INTRON Rbp6
3L	7874040	3L_7874040_SNP [dm3] 3L_7880940_SNP [dm6]	G	C	6.677e^-5	0.925	INTRON CG32365
X	14260068	X_14260068_INS [dm3] X_14366035_INS [dm6]	G	GGG	6.696e^-5	0.925	INTRON dpr8
3R	25971695	3R_25971695_SNP [dm3] 3R_30145973_SNP [dm6]	T	G	6.832e^-5	0.925	INTRON AdoR
3L	1740428	3L_1740428_SNP [dm3] 3L_1740428_SNP [dm6]	A	G	6.848e^-5	0.925	INTRON Gk
2L	8399672	2L_8399672_SNP [dm3] 2L_8399672_SNP [dm6]	T	G	6.856e^-5	0.925	SYNONYMOUS_CODING CG13386 UPSTREAM CG31898	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4276703	2L_4276703_SNP [dm3] 2L_4276703_SNP [dm6]	T	C	6.889e^-5	0.925	DOWNSTREAM Art2 INTERGENIC
3L	9876194	3L_9876194_SNP [dm3] 3L_9883094_SNP [dm6]	C	T	6.931e^-5	0.925	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15213950	3R_15213950_SNP [dm3] 3R_19388228_SNP [dm6]	G	A	6.935e^-5	0.925	DOWNSTREAM CR34285 INTRON Ino80 & 1 other	TF binding site mE1_TFBS_sens
3L	14834173	3L_14834173_INS [dm3] 3L_14841073_INS [dm6]	A	ATTGCAT	6.949e^-5	0.925	INTRON CG17839
3R	22888958	3R_22888958_SNP [dm3] 3R_27063236_SNP [dm6]	C	T	7.072e^-5	0.925	DOWNSTREAM CG34292 INTRON Nep5
2L	11762891	2L_11762891_DEL [dm3] 2L_11762891_DEL [dm6]	AA	A	7.096e^-5	0.925	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1094371	3L_1094371_SNP [dm3] 3L_1094371_SNP [dm6]	A	T	7.168e^-5	0.925	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10186728	2L_10186728_SNP [dm3] 2L_10186728_SNP [dm6]	G	A	7.198e^-5	0.925	NON_SYNONYMOUS_CODING Sur
3L	17596771	3L_17596771_SNP [dm3] 3L_17603671_SNP [dm6]	C	G	7.211e^-5	0.925	INTRON Eip74EF
3L	17596795	3L_17596795_SNP [dm3] 3L_17603695_SNP [dm6]	T	G	7.211e^-5	0.925	INTRON Eip74EF
3R	18915281	3R_18915281_SNP [dm3] 3R_23089559_SNP [dm6]	T	C	7.290e^-5	0.925	INTRON CG13830
X	14260086	X_14260086_SNP [dm3] X_14366053_SNP [dm6]	A	G	7.327e^-5	0.925	INTRON dpr8
2R	17769276	2R_17769276_SNP [dm3] 2R_21881771_SNP [dm6]	G	A	7.345e^-5	0.925	SYNONYMOUS_CODING PpN58A INTRON Fili	TF binding site mE1_TFBS_sens
3L	7480613	3L_7480613_SNP [dm3] 3L_7487513_SNP [dm6]	A	G	7.429e^-5	0.925	INTRON mthl6
X	16985212	X_16985212_SNP [dm3] X_17091179_SNP [dm6]	A	T	7.436e^-5	0.925	UPSTREAM CG16700 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3845680	3L_3845680_SNP [dm3] 3L_3845680_SNP [dm6]	A	T	7.465e^-5	0.925	UPSTREAM Awh INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	15839140	2R_15839140_SNP [dm3] 2R_19951635_SNP [dm6]	C	T	7.524e^-5	0.925	SYNONYMOUS_CODING CG10822
3L	14809022	3L_14809022_SNP [dm3] 3L_14815922_SNP [dm6]	A	T	7.557e^-5	0.925	INTRON CG17839
3R	16099146	3R_16099146_SNP [dm3] 3R_20273424_SNP [dm6]	T	C	7.582e^-5	0.925	INTRON cic
3L	17596789	3L_17596789_SNP [dm3] 3L_17603689_SNP [dm6]	G	A	7.590e^-5	0.925	INTRON Eip74EF
3L	14107971	3L_14107971_SNP [dm3] 3L_14114871_SNP [dm6]	C	A	7.672e^-5	0.925	INTRON Sox21b
3L	4545925	3L_4545925_SNP [dm3] 3L_4545925_SNP [dm6]	C	A	7.723e^-5	0.925	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11327910	2R_11327910_SNP [dm3] 2R_15440405_SNP [dm6]	T	C	7.765e^-5	0.925	INTRON CG43729
3L	6005160	3L_6005160_SNP [dm3] 3L_6012060_SNP [dm6]	T	G	7.819e^-5	0.925	INTRON PVRAP
3L	10530299	3L_10530299_SNP [dm3] 3L_10537199_SNP [dm6]	T	A	7.866e^-5	0.925	INTRON A2bp1
3L	12846073	3L_12846073_SNP [dm3] 3L_12852973_SNP [dm6]	G	T	7.952e^-5	0.925	UTR_3_PRIME Wbp2 UPSTREAM Ent3 DOWNSTREAM Wbp2
2R	19703974	2R_19703974_SNP [dm3] 2R_23816451_SNP [dm6]	G	T	8.003e^-5	0.925	INTRON CG4797
2R	11571818	2R_11571818_SNP [dm3] 2R_15684313_SNP [dm6]	C	T	8.027e^-5	0.925	SYNONYMOUS_CODING Ranbp11 DOWNSTREAM CG30082 EXON CR43429	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3845688	3L_3845688_SNP [dm3] 3L_3845688_SNP [dm6]	G	A	8.135e^-5	0.925	UPSTREAM Awh INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	15839122	2R_15839122_SNP [dm3] 2R_19951617_SNP [dm6]	G	A	8.146e^-5	0.925	SYNONYMOUS_CODING CG10822
3L	11132623	3L_11132623_SNP [dm3] 3L_11139523_SNP [dm6]	A	G	8.188e^-5	0.925	INTRON CG32082
2L	5544156	2L_5544156_SNP [dm3] 2L_5544156_SNP [dm6]	A	C	8.252e^-5	0.925	NON_SYNONYMOUS_CODING Lam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26927114	3R_26927114_SNP [dm3] 3R_31101392_SNP [dm6]	T	G	8.485e^-5	0.925	UPSTREAM CG15553 INTERGENIC
3L	2646887	3L_2646887_SNP [dm3] 3L_2646887_SNP [dm6]	A	T	8.513e^-5	0.925	UTR_3_PRIME CG1143 DOWNSTREAM CG1143
3L	12571356	3L_12571356_SNP [dm3] 3L_12578256_SNP [dm6]	C	T	8.621e^-5	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26989578	3R_26989578_SNP [dm3] 3R_31163856_SNP [dm6]	A	G	8.671e^-5	0.925	INTRON Gycbeta100B & 1 other
3R	18626524	3R_18626524_SNP [dm3] 3R_22800802_SNP [dm6]	C	T	8.963e^-5	0.925	INTERGENIC
3L	7003316	3L_7003316_SNP [dm3] 3L_7010216_SNP [dm6]	A	G	8.966e^-5	0.925	INTRON Mp
2R	17920187	2R_17920187_SNP [dm3] 2R_22032682_SNP [dm6]	G	T	9.006e^-5	0.925	INTRON CG34370
2R	15144490	2R_15144490_SNP [dm3] 2R_19256985_SNP [dm6]	T	A	9.035e^-5	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
2R	17920188	2R_17920188_DEL [dm3] 2R_22032683_DEL [dm6]	GGGCTGG	G	9.045e^-5	0.925	INTRON CG34370
3R	24124706	3R_24124706_SNP [dm3] 3R_28298984_SNP [dm6]	A	G	9.051e^-5	0.925	INTERGENIC
2L	2706109	2L_2706109_SNP [dm3] 2L_2706109_SNP [dm6]	C	A	9.060e^-5	0.925	INTRON CG31690
3L	2738346	3L_2738346_SNP [dm3] 3L_2738346_SNP [dm6]	T	A	9.066e^-5	0.925	INTRON Mrtf
3L	1718694	3L_1718694_SNP [dm3] 3L_1718694_SNP [dm6]	T	C	9.073e^-5	0.925	INTRON drpr	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	19659476	3R_19659476_SNP [dm3] 3R_23833754_SNP [dm6]	T	A	9.091e^-5	0.925	INTRON CG34355
3L	12890394	3L_12890394_SNP [dm3] 3L_12897294_SNP [dm6]	G	A	9.098e^-5	0.925	INTERGENIC
3R	10786269	3R_10786269_SNP [dm3] 3R_14960547_SNP [dm6]	T	C	9.216e^-5	0.925	INTERGENIC
X	21948890	X_21948890_SNP [dm3] X_22547054_SNP [dm6]	C	G	9.281e^-5	0.925	UPSTREAM CG17601 INTERGENIC
2L	5548448	2L_5548448_SNP [dm3] 2L_5548448_SNP [dm6]	G	A	9.433e^-5	0.925	SYNONYMOUS_CODING Oscillin	TF binding site BDTNP1_TFBS_z mE1_TFBS_sens
2L	1249423	2L_1249423_SNP [dm3] 2L_1249423_SNP [dm6]	T	A	9.453e^-5	0.925	INTERGENIC
3L	1094360	3L_1094360_SNP [dm3] 3L_1094360_SNP [dm6]	A	T	9.548e^-5	0.925	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7609585	X_7609585_SNP [dm3] X_7715552_SNP [dm6]	T	C	9.618e^-5	0.925	UPSTREAM CG15478 INTRON CG15478
3R	8478837	3R_8478837_SNP [dm3] 3R_12653115_SNP [dm6]	G	T	9.710e^-5	0.925	DOWNSTREAM Dtg INTERGENIC
3L	837662	3L_837662_SNP [dm3] 3L_837662_SNP [dm6]	A	C	9.747e^-5	0.925	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	1720647	3L_1720647_SNP [dm3] 3L_1720647_SNP [dm6]	G	A	9.784e^-5	0.925	UTR_3_PRIME CG18171 INTRON drpr
2R	18796668	2R_18796668_SNP [dm3] 2R_22909145_SNP [dm6]	G	A	9.856e^-5	0.925	INTRON nahoda
3R	26195063	3R_26195063_SNP [dm3] 3R_30369341_SNP [dm6]	C	T	9.902e^-5	0.925	UTR_3_PRIME hdc
2L	10378734	2L_10378734_SNP [dm3] 2L_10378734_SNP [dm6]	A	G	9.963e^-5	0.925	SYNONYMOUS_CODING dpr19
2L	14209561	2L_14209561_SNP [dm3] 2L_14209561_SNP [dm6]	C	T	9.982e^-5	0.925	INTRON Dyrk2
2L	6780278	2L_6780278_SNP [dm3] 2L_6780278_SNP [dm6]	G	T	1.015e^-4	0.925	NON_SYNONYMOUS_CODING nrv1
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	1.016e^-4	0.925	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3790252	3L_3790252_SNP [dm3] 3L_3790252_SNP [dm6]	G	A	1.018e^-4	0.925	UPSTREAM CG32266 INTRON CG32264	TF binding site mE1_TFBS_bab1
2L	1677635	2L_1677635_SNP [dm3] 2L_1677635_SNP [dm6]	T	A	1.020e^-4	0.925	INTRON chinmo
2L	2406902	2L_2406902_SNP [dm3] 2L_2406902_SNP [dm6]	T	A	1.032e^-4	0.925	INTRON VGlut
2R	13414867	2R_13414867_SNP [dm3] 2R_17527362_SNP [dm6]	T	G	1.033e^-4	0.925	INTRON Patronin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13414840	2R_13414840_SNP [dm3] 2R_17527335_SNP [dm6]	G	A	1.033e^-4	0.925	INTRON Patronin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19132467	3R_19132467_SNP [dm3] 3R_23306745_SNP [dm6]	T	C	1.035e^-4	0.925	INTRON pnt
2R	18796669	2R_18796669_SNP [dm3] 2R_22909146_SNP [dm6]	A	T	1.038e^-4	0.925	INTRON nahoda
3R	13968905	3R_13968905_SNP [dm3] 3R_18143183_SNP [dm6]	C	A	1.038e^-4	0.925	INTERGENIC
3R	25026945	3R_25026945_SNP [dm3] 3R_29201223_SNP [dm6]	C	G	1.047e^-4	0.925	SYNONYMOUS_CODING CG11899 DOWNSTREAM Mesh1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16985197	X_16985197_SNP [dm3] X_17091164_SNP [dm6]	G	A	1.053e^-4	0.925	UPSTREAM CG16700 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	7609576	X_7609576_SNP [dm3] X_7715543_SNP [dm6]	A	T	1.060e^-4	0.925	UPSTREAM CG15478 INTRON CG15478
3R	11249914	3R_11249914_SNP [dm3] 3R_15424192_SNP [dm6]	G	A	1.070e^-4	0.925	SYNONYMOUS_CODING CG6118	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20942902	X_20942902_DEL [dm3] X_21071875_DEL [dm6]	TTTTTGT	T	1.071e^-4	0.925	INTRON bves	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	17713949	3L_17713949_SNP [dm3] 3L_17720849_SNP [dm6]	T	A	1.074e^-4	0.925	UPSTREAM CheB74a INTRON Ccn
3L	20320241	3L_20320241_SNP [dm3] 3L_20327141_SNP [dm6]	A	G	1.086e^-4	0.925	INTERGENIC	transposable element FlyBase
2L	13572023	2L_13572023_DEL [dm3] 2L_13572023_DEL [dm6]	CC	C	1.088e^-4	0.925	INTRON kuz
2R	4581088	2R_4581088_SNP [dm3] 2R_8693583_SNP [dm6]	C	T	1.088e^-4	0.925	UTR_3_PRIME CG8586 DOWNSTREAM CG8586 & 1 other
2L	5550423	2L_5550423_SNP [dm3] 2L_5550423_SNP [dm6]	G	T	1.089e^-4	0.925	NON_SYNONYMOUS_CODING CG14014 DOWNSTREAM Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13248543	X_13248543_SNP [dm3] X_13354510_SNP [dm6]	A	G	1.096e^-4	0.925	INTERGENIC
2L	1026592	2L_1026592_SNP [dm3] 2L_1026592_SNP [dm6]	A	G	1.105e^-4	0.925	NON_SYNONYMOUS_CODING CG4375 INTRON IA-2
2L	5560612	2L_5560612_SNP [dm3] 2L_5560612_SNP [dm6]	C	T	1.109e^-4	0.925	INTRON GluRIIB
2L	13824446	2L_13824446_SNP [dm3] 2L_13824446_SNP [dm6]	C	T	1.111e^-4	0.925	SYNONYMOUS_CODING tam DOWNSTREAM b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2738393	3L_2738393_SNP [dm3] 3L_2738393_SNP [dm6]	G	A	1.124e^-4	0.925	INTRON Mrtf
2L	9051714	2L_9051714_DEL [dm3] 2L_9051714_DEL [dm6]	CG	C	1.135e^-4	0.925	UTR_3_PRIME CG31708
2R	13239735	2R_13239735_SNP [dm3] 2R_17352230_SNP [dm6]	C	A	1.142e^-4	0.925	SYNONYMOUS_CODING mbl
3L	8903437	3L_8903437_SNP [dm3] 3L_8910337_SNP [dm6]	G	A	1.143e^-4	0.925	SYNONYMOUS_CODING mfr START_GAINED mfr UTR_5_PRIME mfr
3R	20466981	3R_20466981_SNP [dm3] 3R_24641259_SNP [dm6]	C	G	1.148e^-4	0.925	INTRON puf
3L	1718447	3L_1718447_SNP [dm3] 3L_1718447_SNP [dm6]	T	C	1.149e^-4	0.925	INTRON drpr	TF binding site BDTNP1_TFBS_sna
2L	6100946	2L_6100946_SNP [dm3] 2L_6100946_SNP [dm6]	G	A	1.161e^-4	0.925	INTRON stai	TF binding site BDTNP1_TFBS_dl
3R	16390710	3R_16390710_SNP [dm3] 3R_20564988_SNP [dm6]	A	T	1.164e^-4	0.925	UPSTREAM CG10877 & 1 other INTRON CG5191	TF binding site mE1_TFBS_cnc
2L	5560580	2L_5560580_SNP [dm3] 2L_5560580_SNP [dm6]	A	T	1.172e^-4	0.925	INTRON GluRIIB
3R	14623556	3R_14623556_SNP [dm3] 3R_18797834_SNP [dm6]	G	A	1.174e^-4	0.925	INTERGENIC
3L	9199268	3L_9199268_SNP [dm3] 3L_9206168_SNP [dm6]	T	C	1.177e^-4	0.925	INTRON Slc45-1
2R	20161899	2R_20161899_SNP [dm3] 2R_24274376_SNP [dm6]	G	A	1.190e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	14104171	3R_14104171_SNP [dm3] 3R_18278449_SNP [dm6]	A	G	1.196e^-4	0.925	SYNONYMOUS_CODING CG7142 INTRON eIF-1A	TF binding site mE1_TFBS_chinmo
3L	3845677	3L_3845677_INS [dm3] 3L_3845677_INS [dm6]	A	ACT	1.200e^-4	0.925	UPSTREAM Awh INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	13239732	2R_13239732_SNP [dm3] 2R_17352227_SNP [dm6]	G	A	1.209e^-4	0.925	SYNONYMOUS_CODING mbl
3L	2531486	3L_2531486_SNP [dm3] 3L_2531486_SNP [dm6]	T	G	1.209e^-4	0.925	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	167152	2L_167152_SNP [dm3] 2L_167152_SNP [dm6]	A	G	1.210e^-4	0.925	INTRON spen	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2054792	3L_2054792_SNP [dm3] 3L_2054792_SNP [dm6]	T	G	1.234e^-4	0.925	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_sens
2R	15838896	2R_15838896_SNP [dm3] 2R_19951391_SNP [dm6]	C	T	1.244e^-4	0.925	START_GAINED CG10822 UTR_5_PRIME CG10822
3R	21261938	3R_21261938_SNP [dm3] 3R_25436216_SNP [dm6]	C	T	1.248e^-4	0.925	INTRON Fur1
3R	25021079	3R_25021079_SNP [dm3] 3R_29195357_SNP [dm6]	G	A	1.254e^-4	0.925	UPSTREAM CG14509 INTERGENIC
2R	15839110	2R_15839110_SNP [dm3] 2R_19951605_SNP [dm6]	C	A	1.254e^-4	0.925	SYNONYMOUS_CODING CG10822
3L	12793714	3L_12793714_SNP [dm3] 3L_12800614_SNP [dm6]	A	G	1.255e^-4	0.925	INTRON Atg1
3R	10412814	3R_10412814_SNP [dm3] 3R_14587092_SNP [dm6]	C	G	1.262e^-4	0.925	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12025247	X_12025247_SNP [dm3] X_12131214_SNP [dm6]	A	G	1.274e^-4	0.925	INTRON Ten-a
3L	580447	3L_580447_SNP [dm3] 3L_580447_SNP [dm6]	G	A	1.276e^-4	0.925	UTR_3_PRIME hipk UPSTREAM Ppm1
2R	15838900	2R_15838900_SNP [dm3] 2R_19951395_SNP [dm6]	C	T	1.276e^-4	0.925	UTR_5_PRIME CG10822
2R	17925113	2R_17925113_SNP [dm3] 2R_22037608_SNP [dm6]	T	A	1.277e^-4	0.925	START_GAINED CG34370 UTR_5_PRIME CG34370
3L	10530207	3L_10530207_DEL [dm3] 3L_10537107_DEL [dm6]	TAACCCCT	T	1.280e^-4	0.925	INTRON A2bp1
3R	25574619	3R_25574619_SNP [dm3] 3R_29748897_SNP [dm6]	C	T	1.285e^-4	0.925	UTR_5_PRIME ATPsyn-gamma UPSTREAM yata & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	15838910	2R_15838910_SNP [dm3] 2R_19951405_SNP [dm6]	T	A	1.288e^-4	0.925	UTR_5_PRIME CG10822
3L	14805978	3L_14805978_SNP [dm3] 3L_14812878_SNP [dm6]	G	C	1.293e^-4	0.925	INTRON CG17839	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9876218	3L_9876218_SNP [dm3] 3L_9883118_SNP [dm6]	T	A	1.305e^-4	0.925	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11718340	2R_11718340_SNP [dm3] 2R_15830835_SNP [dm6]	C	T	1.309e^-4	0.925	INTRON tun & 1 other	regulatory region REDfly_CRMs
2R	14526815	2R_14526815_SNP [dm3] 2R_18639310_SNP [dm6]	C	T	1.309e^-4	0.925	UPSTREAM tRNA:CR30227 & 2 others DOWNSTREAM tRNA:G3:55E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
2R	14526838	2R_14526838_SNP [dm3] 2R_18639333_SNP [dm6]	A	G	1.309e^-4	0.925	UPSTREAM tRNA:CR30227 & 2 others DOWNSTREAM tRNA:G3:55E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	16829653	2R_16829653_SNP [dm3] 2R_20942148_SNP [dm6]	C	T	1.316e^-4	0.925	INTERGENIC
X	8246042	X_8246042_DEL [dm3] X_8352009_DEL [dm6]	ACA	A	1.322e^-4	0.925	INTRON nAChRalpha3
2L	6739034	2L_6739034_SNP [dm3] 2L_6739034_SNP [dm6]	C	T	1.332e^-4	0.925	SYNONYMOUS_CODING TTLL3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14623642	3R_14623642_SNP [dm3] 3R_18797920_SNP [dm6]	G	A	1.332e^-4	0.925	INTERGENIC
3R	26486380	3R_26486380_SNP [dm3] 3R_30660658_SNP [dm6]	A	T	1.334e^-4	0.925	INTERGENIC
3L	14834277	3L_14834277_SNP [dm3] 3L_14841177_SNP [dm6]	T	A	1.334e^-4	0.925	INTRON CG17839
3R	13314664	3R_13314664_SNP [dm3] 3R_17488942_SNP [dm6]	C	T	1.339e^-4	0.925	INTRON Dscam3
3R	9810936	3R_9810936_SNP [dm3] 3R_13985214_SNP [dm6]	A	T	1.342e^-4	0.925	INTRON rdx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA
3L	3794654	3L_3794654_SNP [dm3] 3L_3794654_SNP [dm6]	A	C	1.343e^-4	0.925	START_GAINED CG32264 UTR_5_PRIME CG32264 INTRON CG32264
2R	11666418	2R_11666418_SNP [dm3] 2R_15778913_SNP [dm6]	C	T	1.345e^-4	0.925	INTRON Zasp52
2L	5543966	2L_5543966_SNP [dm3] 2L_5543966_SNP [dm6]	A	C	1.347e^-4	0.925	INTRON Lam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	4207730	X_4207730_DEL [dm3] X_4313697_DEL [dm6]	CGGCTAA	C	1.351e^-4	0.925	DOWNSTREAM mei-9 INTRON CR44957
3L	10529637	3L_10529637_SNP [dm3] 3L_10536537_SNP [dm6]	A	T	1.351e^-4	0.925	INTRON A2bp1
3R	25562486	3R_25562486_SNP [dm3] 3R_29736764_SNP [dm6]	G	T	1.356e^-4	0.925	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	6837834	3L_6837834_SNP [dm3] 3L_6844734_SNP [dm6]	T	C	1.358e^-4	0.925	INTERGENIC
2L	2406893	2L_2406893_SNP [dm3] 2L_2406893_SNP [dm6]	A	T	1.358e^-4	0.925	INTRON VGlut
X	6490536	X_6490536_SNP [dm3] X_6596503_SNP [dm6]	A	C	1.362e^-4	0.925	UTR_3_PRIME Pat1 UPSTREAM APC7
2L	7231313	2L_7231313_SNP [dm3] 2L_7231313_SNP [dm6]	T	C	1.363e^-4	0.925	DOWNSTREAM CG43800 INTRON Ndae1
3R	20508900	3R_20508900_SNP [dm3] 3R_24683178_SNP [dm6]	C	A	1.367e^-4	0.925	INTRON slo
3R	8366380	3R_8366380_SNP [dm3] 3R_12540658_SNP [dm6]	T	C	1.367e^-4	0.925	INTRON Octbeta3R
3L	7948726	3L_7948726_SNP [dm3] 3L_7955626_SNP [dm6]	G	C	1.370e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1677679	2L_1677679_SNP [dm3] 2L_1677679_SNP [dm6]	G	A	1.379e^-4	0.925	INTRON chinmo
X	8678837	X_8678837_SNP [dm3] X_8784804_SNP [dm6]	C	T	1.387e^-4	0.925	INTRON Lim1
3L	5503175	3L_5503175_SNP [dm3] 3L_5510075_SNP [dm6]	G	T	1.388e^-4	0.925	INTRON CG34342
X	16421213	X_16421213_SNP [dm3] X_16527180_SNP [dm6]	T	C	1.389e^-4	0.925	INTRON para	TF binding site BDTNP1_TFBS_dl
3L	2531564	3L_2531564_SNP [dm3] 3L_2531564_SNP [dm6]	G	A	1.391e^-4	0.925	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	4537412	X_4537412_SNP [dm3] X_4643379_SNP [dm6]	C	T	1.396e^-4	0.925	INTRON CG3081 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14527053	2R_14527053_SNP [dm3] 2R_18639548_SNP [dm6]	A	G	1.397e^-4	0.925	UPSTREAM tRNA:CR30227 & 2 others DOWNSTREAM tRNA:G3:55E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26331511	3R_26331511_SNP [dm3] 3R_30505789_SNP [dm6]	A	C	1.399e^-4	0.925	UPSTREAM CG15539 & 1 other INTERGENIC
2L	11311256	2L_11311256_INS [dm3] 2L_11311256_INS [dm6]	C	CTG	1.405e^-4	0.925	INTERGENIC
3R	25729448	3R_25729448_SNP [dm3] 3R_29903726_SNP [dm6]	C	A	1.411e^-4	0.925	NON_SYNONYMOUS_CODING CG15517 DOWNSTREAM CG31038	TF binding site mE1_TFBS_bab1
3L	11927648	3L_11927648_SNP [dm3] 3L_11934548_SNP [dm6]	T	C	1.412e^-4	0.925	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1733503	3L_1733503_SNP [dm3] 3L_1733503_SNP [dm6]	G	A	1.415e^-4	0.925	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7479975	3L_7479975_SNP [dm3] 3L_7486875_SNP [dm6]	T	C	1.434e^-4	0.925	SYNONYMOUS_CODING mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19533244	2R_19533244_SNP [dm3] 2R_23645721_SNP [dm6]	G	A	1.447e^-4	0.925	UPSTREAM retn INTRON retn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	837739	3L_837739_INS [dm3] 3L_837739_INS [dm6]	T	TA	1.451e^-4	0.925	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
X	5662576	X_5662576_SNP [dm3] X_5768543_SNP [dm6]	T	G	1.454e^-4	0.925	INTRON CG42699 & 1 other
X	13407394	X_13407394_SNP [dm3] X_13513361_SNP [dm6]	C	T	1.456e^-4	0.925	INTRON Neto
3R	9771546	3R_9771546_SNP [dm3] 3R_13945824_SNP [dm6]	T	A	1.458e^-4	0.925	UPSTREAM Art6 INTERGENIC
3R	25068024	3R_25068024_SNP [dm3] 3R_29242302_SNP [dm6]	T	C	1.465e^-4	0.925	SYNONYMOUS_CODING CG31445
3L	1728858	3L_1728858_SNP [dm3] 3L_1728858_SNP [dm6]	G	T	1.471e^-4	0.925	INTRON drpr	TF binding site mE1_TFBS_sens
3R	25566651	3R_25566651_SNP [dm3] 3R_29740929_SNP [dm6]	T	C	1.474e^-4	0.925	SYNONYMOUS_CODING CG1969
2L	14208527	2L_14208527_SNP [dm3] 2L_14208527_SNP [dm6]	T	G	1.482e^-4	0.925	INTRON Dyrk2
3L	2646601	3L_2646601_SNP [dm3] 3L_2646601_SNP [dm6]	T	C	1.491e^-4	0.925	UTR_3_PRIME CG1143	TF binding site mE1_TFBS_cad
3L	3185989	3L_3185989_DEL [dm3] 3L_3185989_DEL [dm6]	AGACTA	A	1.506e^-4	0.925	UPSTREAM CG32284 DOWNSTREAM Girdin INTRON CG42494
2L	5543816	2L_5543816_SNP [dm3] 2L_5543816_SNP [dm6]	C	T	1.513e^-4	0.925	INTRON Lam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	24197819	3R_24197819_SNP [dm3] 3R_28372097_SNP [dm6]	T	C	1.519e^-4	0.925	INTERGENIC
2L	5544315	2L_5544315_SNP [dm3] 2L_5544315_SNP [dm6]	A	G	1.522e^-4	0.925	SYNONYMOUS_CODING Lam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	5917543	3R_5917543_SNP [dm3] 3R_10091821_SNP [dm6]	G	A	1.523e^-4	0.925	DOWNSTREAM mir-317 INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	5165835	2L_5165835_SNP [dm3] 2L_5165835_SNP [dm6]	A	T	1.528e^-4	0.925	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	3794658	3L_3794658_SNP [dm3] 3L_3794658_SNP [dm6]	C	G	1.536e^-4	0.925	UTR_5_PRIME CG32264 INTRON CG32264
3L	12659663	3L_12659663_SNP [dm3] 3L_12666563_SNP [dm6]	A	G	1.558e^-4	0.925	INTERGENIC
2R	12227398	2R_12227398_SNP [dm3] 2R_16339893_SNP [dm6]	T	C	1.564e^-4	0.925	SYNONYMOUS_CODING Hmgs	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25571102	3R_25571102_SNP [dm3] 3R_29745380_SNP [dm6]	C	T	1.570e^-4	0.925	START_GAINED IntS11 UTR_5_PRIME IntS11 UPSTREAM CG7609	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	4580784	2R_4580784_SNP [dm3] 2R_8693279_SNP [dm6]	G	T	1.572e^-4	0.925	UTR_3_PRIME CG8586 DOWNSTREAM Jon44E & 1 other
2L	2406896	2L_2406896_SNP [dm3] 2L_2406896_SNP [dm6]	A	T	1.572e^-4	0.925	INTRON VGlut
3R	5320074	3R_5320074_SNP [dm3] 3R_9494352_SNP [dm6]	C	T	1.576e^-4	0.925	UPSTREAM CG16779 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	4609226	2R_4609226_SNP [dm3] 2R_8721721_SNP [dm6]	G	C	1.601e^-4	0.925	UPSTREAM CG30357 INTRON CG14767	TF binding site mE1_TFBS_HSA
3L	8766933	3L_8766933_SNP [dm3] 3L_8773833_SNP [dm6]	A	G	1.607e^-4	0.925	INTRON Fhos	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	5560582	2L_5560582_SNP [dm3] 2L_5560582_SNP [dm6]	G	T	1.616e^-4	0.925	INTRON GluRIIB
2L	5560599	2L_5560599_SNP [dm3] 2L_5560599_SNP [dm6]	C	A	1.616e^-4	0.925	INTRON GluRIIB
3R	25576897	3R_25576897_SNP [dm3] 3R_29751175_SNP [dm6]	C	T	1.617e^-4	0.925	SYNONYMOUS_CODING yata	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14807767	3L_14807767_SNP [dm3] 3L_14814667_SNP [dm6]	G	C	1.618e^-4	0.925	INTRON CG17839
3L	1718230	3L_1718230_SNP [dm3] 3L_1718230_SNP [dm6]	A	G	1.623e^-4	0.925	INTRON drpr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2436373	X_2436373_SNP [dm3] X_2542340_SNP [dm6]	G	C	1.624e^-4	0.925	INTRON trol	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	11576600	2R_11576600_SNP [dm3] 2R_15689095_SNP [dm6]	G	T	1.629e^-4	0.925	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2531582	3L_2531582_SNP [dm3] 3L_2531582_SNP [dm6]	G	T	1.633e^-4	0.925	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	22249416	3R_22249416_SNP [dm3] 3R_26423694_SNP [dm6]	T	A	1.644e^-4	0.925	INTERGENIC
3R	25567563	3R_25567563_SNP [dm3] 3R_29741841_SNP [dm6]	A	C	1.654e^-4	0.925	UTR_3_PRIME CG1969 DOWNSTREAM CG7609
X	20525333	X_20525333_SNP [dm3] X_20654306_SNP [dm6]	G	T	1.656e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14326001	2R_14326001_SNP [dm3] 2R_18438496_SNP [dm6]	G	T	1.657e^-4	0.925	INTRON CG30118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24427748	3R_24427748_SNP [dm3] 3R_28602026_SNP [dm6]	A	T	1.657e^-4	0.925	UPSTREAM snoRNA:Psi28S-3405c & 2 others DOWNSTREAM snoRNA:Psi28S-3405a & 2 others INTRON Hrb98DE
2R	14526829	2R_14526829_SNP [dm3] 2R_18639324_SNP [dm6]	C	T	1.658e^-4	0.925	UPSTREAM tRNA:CR30227 & 2 others DOWNSTREAM tRNA:G3:55E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	9639963	3L_9639963_DEL [dm3] 3L_9646863_DEL [dm6]	GGATGACTAAAAAACAAAAG...	G	1.660e^-4	0.925	INTRON fry & 1 other
3L	14805972	3L_14805972_DEL [dm3] 3L_14812872_DEL [dm6]	GG	G	1.669e^-4	0.925	INTRON CG17839	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4345407	3L_4345407_SNP [dm3] 3L_4345407_SNP [dm6]	A	C	1.670e^-4	0.925	NON_SYNONYMOUS_CODING Cip4 UPSTREAM CR45156 INTRON Cip4
2L	14214374	2L_14214374_SNP [dm3] 2L_14214374_SNP [dm6]	G	T	1.682e^-4	0.925	INTRON Dyrk2
3R	8494403	3R_8494403_SNP [dm3] 3R_12668681_SNP [dm6]	G	T	1.682e^-4	0.925	UTR_5_PRIME CG14395
2R	15839197	2R_15839197_SNP [dm3] 2R_19951692_SNP [dm6]	G	A	1.682e^-4	0.925	SYNONYMOUS_CODING CG10822
3L	14834278	3L_14834278_SNP [dm3] 3L_14841178_SNP [dm6]	G	T	1.684e^-4	0.925	INTRON CG17839
2L	5550661	2L_5550661_SNP [dm3] 2L_5550661_SNP [dm6]	G	A	1.689e^-4	0.925	SYNONYMOUS_CODING CG14014	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	14154319	X_14154319_SNP [dm3] X_14260286_SNP [dm6]	G	C	1.693e^-4	0.925	UPSTREAM CG1461 INTERGENIC
2L	17287730	2L_17287730_SNP [dm3] 2L_17287730_SNP [dm6]	C	T	1.694e^-4	0.925	DOWNSTREAM CG15140 INTERGENIC
2R	16969807	2R_16969807_SNP [dm3] 2R_21082302_SNP [dm6]	T	C	1.694e^-4	0.925	INTRON Treh
2R	16969831	2R_16969831_SNP [dm3] 2R_21082326_SNP [dm6]	T	C	1.694e^-4	0.925	INTRON Treh
3R	20466948	3R_20466948_SNP [dm3] 3R_24641226_SNP [dm6]	G	A	1.711e^-4	0.925	SPLICE_SITE_REGION puf INTRON puf
2R	11576437	2R_11576437_SNP [dm3] 2R_15688932_SNP [dm6]	T	C	1.717e^-4	0.925	NON_SYNONYMOUS_CODING Cep89 UPSTREAM CG30090	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10519237	3L_10519237_SNP [dm3] 3L_10526137_SNP [dm6]	A	T	1.743e^-4	0.925	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	104249	2L_104249_SNP [dm3] 2L_104249_SNP [dm6]	A	C	1.753e^-4	0.925	UTR_3_PRIME Nhe1 DOWNSTREAM CG11377
2L	5560554	2L_5560554_DEL [dm3] 2L_5560554_DEL [dm6]	CATA	C	1.759e^-4	0.925	INTRON GluRIIB
2R	15463534	2R_15463534_SNP [dm3] 2R_19576029_SNP [dm6]	A	C	1.771e^-4	0.925	INTRON sm
3R	8481724	3R_8481724_SNP [dm3] 3R_12656002_SNP [dm6]	G	A	1.782e^-4	0.925	INTRON CG6225
3R	8481733	3R_8481733_SNP [dm3] 3R_12656011_SNP [dm6]	C	T	1.782e^-4	0.925	INTRON CG6225
3R	9813765	3R_9813765_SNP [dm3] 3R_13988043_SNP [dm6]	A	T	1.786e^-4	0.925	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1027546	2L_1027546_INS [dm3] 2L_1027546_INS [dm6]	G	GG	1.790e^-4	0.925	UPSTREAM CG4375 INTRON IA-2
3R	24456060	3R_24456060_SNP [dm3] 3R_28630338_SNP [dm6]	T	C	1.793e^-4	0.925	INTRON CG10011	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	9771649	3R_9771649_SNP [dm3] 3R_13945927_SNP [dm6]	T	A	1.796e^-4	0.925	UPSTREAM Art6 INTERGENIC
2R	16878786	2R_16878786_SNP [dm3] 2R_20991281_SNP [dm6]	G	A	1.799e^-4	0.925	UPSTREAM CG3216 DOWNSTREAM dgt3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	15206122	3R_15206122_SNP [dm3] 3R_19380400_SNP [dm6]	T	G	1.814e^-4	0.925	INTRON Ino80
3R	12041901	3R_12041901_SNP [dm3] 3R_16216179_SNP [dm6]	T	A	1.816e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	10743061	3R_10743061_SNP [dm3] 3R_14917339_SNP [dm6]	T	G	1.821e^-4	0.925	INTERGENIC
2L	11494051	2L_11494051_SNP [dm3] 2L_11494051_SNP [dm6]	A	G	1.831e^-4	0.925	INTERGENIC
3L	11132561	3L_11132561_SNP [dm3] 3L_11139461_SNP [dm6]	G	C	1.835e^-4	0.925	INTRON CG32082
3R	5895134	3R_5895134_SNP [dm3] 3R_10069412_SNP [dm6]	C	A	1.835e^-4	0.925	DOWNSTREAM CG33784 INTERGENIC
3L	15116107	3L_15116107_SNP [dm3] 3L_15123007_SNP [dm6]	G	A	1.836e^-4	0.925	SYNONYMOUS_CODING CG16959 DOWNSTREAM CG32847 INTRON Cep135
2L	6412067	2L_6412067_SNP [dm3] 2L_6412067_SNP [dm6]	A	G	1.839e^-4	0.925	UPSTREAM CG13982 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14627285	3R_14627285_SNP [dm3] 3R_18801563_SNP [dm6]	C	T	1.842e^-4	0.925	UTR_3_PRIME CG18208
2R	20355319	2R_20355319_SNP [dm3] 2R_24467796_SNP [dm6]	T	C	1.848e^-4	0.925	INTRON CG13579
3L	10366615	3L_10366615_SNP [dm3] 3L_10373515_SNP [dm6]	A	G	1.850e^-4	0.925	INTERGENIC
2R	16663300	2R_16663300_SNP [dm3] 2R_20775795_SNP [dm6]	T	C	1.855e^-4	0.925	UTR_3_PRIME CG43709 DOWNSTREAM CG13443 & 1 other
X	21946768	X_21946768_SNP [dm3] X_22544932_SNP [dm6]	T	C	1.855e^-4	0.925	UPSTREAM CG17599 INTERGENIC
3L	5144459	3L_5144459_SNP [dm3] 3L_5151359_SNP [dm6]	T	A	1.860e^-4	0.925	INTRON Gen	TF binding site mE1_TFBS_HSA
3L	1719460	3L_1719460_SNP [dm3] 3L_1719460_SNP [dm6]	C	T	1.867e^-4	0.925	SYNONYMOUS_CODING drpr INTRON drpr	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5858670	2L_5858670_SNP [dm3] 2L_5858670_SNP [dm6]	T	C	1.868e^-4	0.925	INTERGENIC
3L	12025599	3L_12025599_SNP [dm3] 3L_12032499_SNP [dm6]	T	C	1.868e^-4	0.925	UPSTREAM CG43993 INTRON rols
3L	1718548	3L_1718548_SNP [dm3] 3L_1718548_SNP [dm6]	C	T	1.870e^-4	0.925	INTRON drpr	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	14868003	2R_14868003_SNP [dm3] 2R_18980498_SNP [dm6]	T	C	1.873e^-4	0.925	INTERGENIC
3R	20995023	3R_20995023_SNP [dm3] 3R_25169301_SNP [dm6]	C	G	1.879e^-4	0.925	DOWNSTREAM lobo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16447700	3L_16447700_SNP [dm3] 3L_16454600_SNP [dm6]	G	C	1.885e^-4	0.925	INTRON CG33158	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	15511106	X_15511106_SNP [dm3] X_15617073_SNP [dm6]	G	A	1.887e^-4	0.925	INTRON sog
2R	18013873	2R_18013873_SNP [dm3] 2R_22126368_SNP [dm6]	T	C	1.890e^-4	0.925	SYNONYMOUS_CODING GM130	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2326168	2L_2326168_SNP [dm3] 2L_2326168_SNP [dm6]	C	T	1.895e^-4	0.925	INTRON CG9967 & 1 other
3R	12836691	3R_12836691_SNP [dm3] 3R_17010969_SNP [dm6]	T	C	1.898e^-4	0.925	INTRON CG8907
3L	2531522	3L_2531522_SNP [dm3] 3L_2531522_SNP [dm6]	T	G	1.903e^-4	0.925	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	837843	3L_837843_SNP [dm3] 3L_837843_SNP [dm6]	C	T	1.905e^-4	0.925	UPSTREAM CG13887 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2R	11635388	2R_11635388_SNP [dm3] 2R_15747883_SNP [dm6]	G	A	1.911e^-4	0.925	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13364779	2R_13364779_SNP [dm3] 2R_17477274_SNP [dm6]	A	T	1.912e^-4	0.925	UPSTREAM veil DOWNSTREAM CG43110 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	11967462	3L_11967462_SNP [dm3] 3L_11974362_SNP [dm6]	C	T	1.926e^-4	0.925	UPSTREAM CG42397 & 1 other INTERGENIC
2L	13545348	2L_13545348_SNP [dm3] 2L_13545348_SNP [dm6]	A	G	1.931e^-4	0.925	INTRON B4
3R	25570881	3R_25570881_SNP [dm3] 3R_29745159_SNP [dm6]	A	T	1.933e^-4	0.925	UPSTREAM IntS11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13399308	2L_13399308_SNP [dm3] 2L_13399308_SNP [dm6]	T	C	1.942e^-4	0.925	NON_SYNONYMOUS_CODING CG7110 UPSTREAM CG10859 EXON CR44600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3L	11728333	3L_11728333_SNP [dm3] 3L_11735233_SNP [dm6]	T	C	1.943e^-4	0.925	UTR_3_PRIME CG6024 DOWNSTREAM CG6024
2R	20033310	2R_20033310_SNP [dm3] 2R_24145787_SNP [dm6]	C	T	1.946e^-4	0.925	INTRON Dat
3R	5851389	3R_5851389_SNP [dm3] 3R_10025667_SNP [dm6]	G	T	1.956e^-4	0.925	UPSTREAM Mical & 1 other INTRON Mical
2L	8406492	2L_8406492_SNP [dm3] 2L_8406492_SNP [dm6]	C	T	1.960e^-4	0.925	SYNONYMOUS_CODING emb
2L	8611665	2L_8611665_SNP [dm3] 2L_8611665_SNP [dm6]	T	C	1.964e^-4	0.925	INTRON Sema-1a
2L	8931116	2L_8931116_SNP [dm3] 2L_8931116_SNP [dm6]	A	G	1.972e^-4	0.925	SYNONYMOUS_CODING CG34398 UTR_3_PRIME CG34398 INTRON CG34398
3R	16650285	3R_16650285_SNP [dm3] 3R_20824563_SNP [dm6]	T	A	1.973e^-4	0.925	UPSTREAM CG17272 DOWNSTREAM AdSS INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2738283	3L_2738283_INS [dm3] 3L_2738283_INS [dm6]	C	CTG	1.979e^-4	0.925	INTRON Mrtf
2R	10925619	2R_10925619_SNP [dm3] 2R_15038114_SNP [dm6]	A	G	1.992e^-4	0.925	INTRON hbs
2L	5560560	2L_5560560_SNP [dm3] 2L_5560560_SNP [dm6]	A	T	2.006e^-4	0.925	INTRON GluRIIB
X	18731292	X_18731292_SNP [dm3] X_18837259_SNP [dm6]	T	A	2.007e^-4	0.925	INTRON Pvf1	TF binding site mE1_TFBS_sens
3R	14627232	3R_14627232_SNP [dm3] 3R_18801510_SNP [dm6]	G	A	2.026e^-4	0.925	UTR_3_PRIME CG18208
X	9499586	X_9499586_SNP [dm3] X_9605553_SNP [dm6]	T	C	2.027e^-4	0.925	SYNONYMOUS_CODING Lst8 DOWNSTREAM Aats-lys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	5532758	3L_5532758_SNP [dm3] 3L_5539658_SNP [dm6]	G	C	2.027e^-4	0.925	SYNONYMOUS_CODING CG10625 UTR_3_PRIME CG10625	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8366384	3R_8366384_SNP [dm3] 3R_12540662_SNP [dm6]	C	T	2.031e^-4	0.925	INTRON Octbeta3R
2L	8399576	2L_8399576_SNP [dm3] 2L_8399576_SNP [dm6]	A	C	2.033e^-4	0.925	SYNONYMOUS_CODING CG13386 UPSTREAM CG31898	TF binding site mE1_TFBS_chinmo
2R	11718259	2R_11718259_SNP [dm3] 2R_15830754_SNP [dm6]	G	T	2.039e^-4	0.925	INTRON tun & 1 other	regulatory region REDfly_CRMs
2L	7933531	2L_7933531_DEL [dm3] 2L_7933531_DEL [dm6]	GCAGCAG	G	2.043e^-4	0.925	INTRON Snoo	TF binding site mE1_TFBS_cad
3L	11114037	3L_11114037_SNP [dm3] 3L_11120937_SNP [dm6]	G	A	2.052e^-4	0.925	UTR_5_PRIME mRpL2 UPSTREAM fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15214273	3R_15214273_SNP [dm3] 3R_19388551_SNP [dm6]	T	A	2.056e^-4	0.925	SYNONYMOUS_CODING CG3734 DOWNSTREAM CR34285 INTRON Ino80	TF binding site mE1_TFBS_sens
3L	13637605	3L_13637605_SNP [dm3] 3L_13644505_SNP [dm6]	G	A	2.062e^-4	0.925	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	3188432	3L_3188432_SNP [dm3] 3L_3188432_SNP [dm6]	T	A	2.064e^-4	0.925	NON_SYNONYMOUS_CODING CG42525 DOWNSTREAM CG14957
3R	5042478	3R_5042478_SNP [dm3] 3R_9216756_SNP [dm6]	T	G	2.065e^-4	0.925	INTRON pum	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13697825	3R_13697825_SNP [dm3] 3R_17872103_SNP [dm6]	A	T	2.066e^-4	0.925	UTR_3_PRIME tinc DOWNSTREAM Rim
X	6164587	X_6164587_SNP [dm3] X_6270554_SNP [dm6]	A	G	2.067e^-4	0.925	SYNONYMOUS_CODING Spt6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15197143	2R_15197143_SNP [dm3] 2R_19309638_SNP [dm6]	A	G	2.069e^-4	0.925	INTRON EndoB
3L	6058804	3L_6058804_SNP [dm3] 3L_6065704_SNP [dm6]	G	A	2.075e^-4	0.925	UPSTREAM CG42269 INTERGENIC
2R	13704757	2R_13704757_SNP [dm3] 2R_17817252_SNP [dm6]	A	C	2.078e^-4	0.925	INTRON grh	regulatory region REDfly_CRMs
2L	104361	2L_104361_SNP [dm3] 2L_104361_SNP [dm6]	T	C	2.081e^-4	0.925	UTR_3_PRIME Nhe1 DOWNSTREAM CG11377
3R	26930988	3R_26930988_SNP [dm3] 3R_31105266_SNP [dm6]	T	C	2.082e^-4	0.925	INTERGENIC
3R	15289174	3R_15289174_SNP [dm3] 3R_19463452_SNP [dm6]	G	A	2.088e^-4	0.925	UPSTREAM Dys & 1 other INTRON Dys	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	2531567	3L_2531567_SNP [dm3] 3L_2531567_SNP [dm6]	C	A	2.091e^-4	0.925	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	8931183	2L_8931183_SNP [dm3] 2L_8931183_SNP [dm6]	G	A	2.100e^-4	0.925	NON_SYNONYMOUS_CODING CG34398 INTRON CG34398
2L	12930323	2L_12930323_SNP [dm3] 2L_12930323_SNP [dm6]	A	C	2.101e^-4	0.925	DOWNSTREAM ACXE INTERGENIC
X	18732449	X_18732449_SNP [dm3] X_18838416_SNP [dm6]	G	T	2.104e^-4	0.925	INTRON Pvf1
2L	20237740	2L_20237740_SNP [dm3] 2L_20237740_SNP [dm6]	C	A	2.115e^-4	0.925	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14811791	3L_14811791_SNP [dm3] 3L_14818691_SNP [dm6]	C	T	2.115e^-4	0.925	INTRON CG17839
X	21112755	X_21112755_SNP [dm3] X_21241728_SNP [dm6]	T	G	2.121e^-4	0.925	INTRON CG32521
2R	12993930	2R_12993930_SNP [dm3] 2R_17106425_SNP [dm6]	T	C	2.143e^-4	0.925	SPLICE_SITE_REGION CG30456 INTRON CG30456	TF binding site mE1_TFBS_cad
X	15135579	X_15135579_DEL [dm3] X_15241546_DEL [dm6]	ATA	A	2.144e^-4	0.925	INTERGENIC
3L	11922610	3L_11922610_SNP [dm3] 3L_11929510_SNP [dm6]	T	C	2.148e^-4	0.925	INTRON CG44837 & 1 other
2R	4583802	2R_4583802_SNP [dm3] 2R_8696297_SNP [dm6]	G	C	2.151e^-4	0.925	UPSTREAM CG8738 & 1 other INTERGENIC
3R	25566358	3R_25566358_SNP [dm3] 3R_29740636_SNP [dm6]	T	C	2.156e^-4	0.925	SYNONYMOUS_CODING CG1969
2L	2406879	2L_2406879_SNP [dm3] 2L_2406879_SNP [dm6]	T	A	2.165e^-4	0.925	INTRON VGlut
2R	4581167	2R_4581167_SNP [dm3] 2R_8693662_SNP [dm6]	G	A	2.177e^-4	0.925	UTR_3_PRIME CG8586 DOWNSTREAM CG8586 & 1 other
2R	18362978	2R_18362978_SNP [dm3] 2R_22475473_SNP [dm6]	T	C	2.186e^-4	0.925	SYNONYMOUS_CODING CG45062 DOWNSTREAM CG45063	TF binding site mE1_TFBS_chinmo
3L	17597624	3L_17597624_SNP [dm3] 3L_17604524_SNP [dm6]	G	C	2.199e^-4	0.925	INTRON Eip74EF
2R	17661123	2R_17661123_SNP [dm3] 2R_21773618_SNP [dm6]	A	C	2.204e^-4	0.925	SPLICE_SITE_REGION CG4021 INTRON CG4021
3R	12835076	3R_12835076_SNP [dm3] 3R_17009354_SNP [dm6]	T	A	2.212e^-4	0.925	INTRON CG8907
2L	20237757	2L_20237757_SNP [dm3] 2L_20237757_SNP [dm6]	C	T	2.214e^-4	0.925	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5971481	3R_5971481_INS [dm3] 3R_10145759_INS [dm6]	T	TCA	2.222e^-4	0.925	INTRON Invadolysin	TF binding site BDTNP1_TFBS_dl
3R	6526809	3R_6526809_SNP [dm3] 3R_10701087_SNP [dm6]	G	A	2.223e^-4	0.925	SYNONYMOUS_CODING pug	TF binding site mE1_TFBS_chinmo
2L	8931773	2L_8931773_SNP [dm3] 2L_8931773_SNP [dm6]	C	T	2.230e^-4	0.925	SYNONYMOUS_CODING CG34398 INTRON CG34398
3R	23285396	3R_23285396_SNP [dm3] 3R_27459674_SNP [dm6]	A	C	2.242e^-4	0.925	INTERGENIC
2L	590894	2L_590894_SNP [dm3] 2L_590894_SNP [dm6]	C	T	2.242e^-4	0.925	INTRON Gsc	TF binding site BDTNP1_TFBS_Med
2L	12266985	2L_12266985_SNP [dm3] 2L_12266985_SNP [dm6]	G	A	2.250e^-4	0.925	INTRON aret
X	19060558	X_19060558_SNP [dm3] X_19166525_SNP [dm6]	C	T	2.252e^-4	0.925	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl
X	20525476	X_20525476_SNP [dm3] X_20654449_SNP [dm6]	T	C	2.260e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9814003	3R_9814003_SNP [dm3] 3R_13988281_SNP [dm6]	G	A	2.275e^-4	0.925	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3718110	3L_3718110_SNP [dm3] 3L_3718110_SNP [dm6]	A	C	2.288e^-4	0.925	INTRON CG32264
3R	8381114	3R_8381114_SNP [dm3] 3R_12555392_SNP [dm6]	A	G	2.295e^-4	0.925	INTRON Octbeta2R
2R	12063712	2R_12063712_SNP [dm3] 2R_16176207_SNP [dm6]	C	A	2.303e^-4	0.925	INTRON Ptp52F
2L	13824515	2L_13824515_SNP [dm3] 2L_13824515_SNP [dm6]	C	G	2.306e^-4	0.925	SYNONYMOUS_CODING tam DOWNSTREAM b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	20284259	2L_20284259_INS [dm3] 2L_20284259_INS [dm6]	T	CTA	2.316e^-4	0.925	INTERGENIC
2R	15838903	2R_15838903_SNP [dm3] 2R_19951398_SNP [dm6]	A	C	2.317e^-4	0.925	UTR_5_PRIME CG10822
3L	3837280	3L_3837280_SNP [dm3] 3L_3837280_SNP [dm6]	C	A	2.320e^-4	0.925	SYNONYMOUS_CODING enc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11517323	3R_11517323_SNP [dm3] 3R_15691601_SNP [dm6]	T	A	2.325e^-4	0.925	INTERGENIC
2R	11666422	2R_11666422_SNP [dm3] 2R_15778917_SNP [dm6]	T	A	2.334e^-4	0.925	INTRON Zasp52
3L	1728818	3L_1728818_SNP [dm3] 3L_1728818_SNP [dm6]	T	G	2.340e^-4	0.925	INTRON drpr	TF binding site mE1_TFBS_cnc mE1_TFBS_sens
X	15358635	X_15358635_SNP [dm3] X_15464602_SNP [dm6]	G	A	2.341e^-4	0.925	UTR_5_PRIME CG6299 UTR_3_PRIME CG6294 UPSTREAM CG6299 INTRON CG6299 & 1 other	TF binding site mE1_TFBS_chinmo
3R	8366406	3R_8366406_SNP [dm3] 3R_12540684_SNP [dm6]	G	A	2.348e^-4	0.925	INTRON Octbeta3R
3L	16577766	3L_16577766_SNP [dm3] 3L_16584666_SNP [dm6]	G	C	2.353e^-4	0.925	SYNONYMOUS_CODING CG4169 DOWNSTREAM Rpn12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8273014	X_8273014_SNP [dm3] X_8378981_SNP [dm6]	G	A	2.353e^-4	0.925	INTERGENIC
3R	9896799	3R_9896799_INS [dm3] 3R_14071077_INS [dm6]	A	ACATA	2.358e^-4	0.925	INTRON foxo
X	7216806	X_7216806_SNP [dm3] X_7322773_SNP [dm6]	A	C	2.361e^-4	0.925	SYNONYMOUS_CODING Atg5 INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14978554	3R_14978554_SNP [dm3] 3R_19152832_SNP [dm6]	A	T	2.367e^-4	0.925	INTRON CG5835
3R	25823547	3R_25823547_SNP [dm3] 3R_29997825_SNP [dm6]	A	C	2.369e^-4	0.925	UPSTREAM CG11504 & 1 other DOWNSTREAM Sas-6 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	11718346	2R_11718346_DEL [dm3] 2R_15830841_DEL [dm6]	TT	T	2.371e^-4	0.925	INTRON tun & 1 other	regulatory region REDfly_CRMs
2L	1834383	2L_1834383_SNP [dm3] 2L_1834383_SNP [dm6]	A	C	2.374e^-4	0.925	INTERGENIC
3R	25570650	3R_25570650_SNP [dm3] 3R_29744928_SNP [dm6]	C	T	2.380e^-4	0.925	SYNONYMOUS_CODING CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12266941	2L_12266941_SNP [dm3] 2L_12266941_SNP [dm6]	A	T	2.391e^-4	0.925	INTRON aret
3R	10212782	3R_10212782_SNP [dm3] 3R_14387060_SNP [dm6]	G	C	2.401e^-4	0.925	INTERGENIC
3L	3397468	3L_3397468_SNP [dm3] 3L_3397468_SNP [dm6]	G	C	2.403e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	14817946	3L_14817946_SNP [dm3] 3L_14824846_SNP [dm6]	A	G	2.408e^-4	0.925	INTRON CG17839
3L	12025589	3L_12025589_SNP [dm3] 3L_12032489_SNP [dm6]	G	A	2.409e^-4	0.925	UPSTREAM CG43993 INTRON rols
3L	9229668	3L_9229668_SNP [dm3] 3L_9236568_SNP [dm6]	T	C	2.410e^-4	0.925	NON_SYNONYMOUS_CODING CG4483
2L	15111386	2L_15111386_SNP [dm3] 2L_15111386_SNP [dm6]	T	C	2.422e^-4	0.925	INTRON CG15269	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5530474	3L_5530474_SNP [dm3] 3L_5537374_SNP [dm6]	C	T	2.425e^-4	0.925	INTERGENIC
3L	3527835	3L_3527835_SNP [dm3] 3L_3527835_SNP [dm6]	C	T	2.429e^-4	0.925	INTRON Eip63E
3R	21391526	3R_21391526_SNP [dm3] 3R_25565804_SNP [dm6]	G	A	2.435e^-4	0.925	INTRON msi
3L	12039237	3L_12039237_DEL [dm3] 3L_12046137_DEL [dm6]	GCCGTCTAATTATGTTAAAT...	G	2.438e^-4	0.925	DOWNSTREAM CG43638 INTRON rols
2R	4337834	2R_4337834_SNP [dm3] 2R_8450329_SNP [dm6]	A	C	2.439e^-4	0.925	DOWNSTREAM Cyp4e1 INTRON Mal-A1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	13968571	3R_13968571_SNP [dm3] 3R_18142849_SNP [dm6]	C	G	2.451e^-4	0.925	INTERGENIC
3L	12039553	3L_12039553_SNP [dm3] 3L_12046453_SNP [dm6]	C	A	2.452e^-4	0.925	INTRON rols
3L	14071729	3L_14071729_SNP [dm3] 3L_14078629_SNP [dm6]	T	A	2.453e^-4	0.925	INTRON btl	regulatory region REDfly_CRMs
2R	4407132	2R_4407132_SNP [dm3] 2R_8519627_SNP [dm6]	T	C	2.460e^-4	0.925	INTRON mtt
3L	14817116	3L_14817116_SNP [dm3] 3L_14824016_SNP [dm6]	A	T	2.464e^-4	0.925	INTRON CG17839
2L	2735393	2L_2735393_SNP [dm3] 2L_2735393_SNP [dm6]	C	A	2.469e^-4	0.925	UPSTREAM CG31689 INTRON CG31689
3L	5530524	3L_5530524_SNP [dm3] 3L_5537424_SNP [dm6]	A	T	2.472e^-4	0.925	DOWNSTREAM CG10625 INTERGENIC
3L	5221164	3L_5221164_INS [dm3] 3L_5228064_INS [dm6]	A	AA	2.478e^-4	0.925	INTRON shep
X	15358611	X_15358611_SNP [dm3] X_15464578_SNP [dm6]	A	C	2.479e^-4	0.925	UTR_3_PRIME CG6294 UPSTREAM CG6299 INTRON CG6299 & 1 other	TF binding site mE1_TFBS_chinmo
2L	5165853	2L_5165853_SNP [dm3] 2L_5165853_SNP [dm6]	C	T	2.484e^-4	0.925	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
X	8680415	X_8680415_SNP [dm3] X_8786382_SNP [dm6]	A	T	2.484e^-4	0.925	INTRON Lim1	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	21112754	X_21112754_SNP [dm3] X_21241727_SNP [dm6]	G	A	2.490e^-4	0.925	INTRON CG32521
X	2987823	X_2987823_SNP [dm3] X_3093790_SNP [dm6]	G	A	2.491e^-4	0.925	INTRON kirre	regulatory region REDfly_CRMs
3R	21004693	3R_21004693_INS [dm3] 3R_25178971_INS [dm6]	C	CTC	2.491e^-4	0.925	INTRON lobo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12267014	2L_12267014_SNP [dm3] 2L_12267014_SNP [dm6]	T	A	2.499e^-4	0.925	INTRON aret
3R	25251649	3R_25251649_SNP [dm3] 3R_29425927_SNP [dm6]	G	T	2.504e^-4	0.925	INTRON Ptp99A	TF binding site BDTNP1_TFBS_dl
2R	12063714	2R_12063714_SNP [dm3] 2R_16176209_SNP [dm6]	T	C	2.506e^-4	0.925	INTRON Ptp52F
3L	7437605	3L_7437605_SNP [dm3] 3L_7444505_SNP [dm6]	T	G	2.513e^-4	0.925	INTRON CG42458
2R	11575711	2R_11575711_SNP [dm3] 2R_15688206_SNP [dm6]	G	T	2.513e^-4	0.925	NON_SYNONYMOUS_CODING Cep89 SPLICE_SITE_REGION Cep89 DOWNSTREAM Ranbp11	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11327929	2R_11327929_SNP [dm3] 2R_15440424_SNP [dm6]	G	T	2.514e^-4	0.925	INTRON CG43729
3R	25973756	3R_25973756_SNP [dm3] 3R_30148034_SNP [dm6]	C	T	2.515e^-4	0.925	INTRON AdoR
3L	10518960	3L_10518960_SNP [dm3] 3L_10525860_SNP [dm6]	T	G	2.518e^-4	0.925	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4990171	3L_4990171_SNP [dm3] 3L_4990171_SNP [dm6]	T	C	2.519e^-4	0.925	INTRON Con
2R	17769291	2R_17769291_SNP [dm3] 2R_21881786_SNP [dm6]	G	A	2.526e^-4	0.925	SYNONYMOUS_CODING PpN58A INTRON Fili	TF binding site mE1_TFBS_sens
X	20397440	X_20397440_SNP [dm3] X_20526413_SNP [dm6]	A	T	2.541e^-4	0.925	INTERGENIC
3L	7593284	3L_7593284_SNP [dm3] 3L_7600184_SNP [dm6]	A	T	2.549e^-4	0.925	INTRON CG33275
X	15358454	X_15358454_SNP [dm3] X_15464421_SNP [dm6]	G	A	2.550e^-4	0.925	UTR_5_PRIME CG6299 UTR_3_PRIME CG6294 UPSTREAM CG6299	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	6100997	2L_6100997_SNP [dm3] 2L_6100997_SNP [dm6]	A	T	2.555e^-4	0.925	INTRON stai	TF binding site BDTNP1_TFBS_dl
3L	7479886	3L_7479886_SNP [dm3] 3L_7486786_SNP [dm6]	C	T	2.556e^-4	0.925	INTRON mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6693337	3L_6693337_SNP [dm3] 3L_6700237_SNP [dm6]	A	T	2.558e^-4	0.925	INTRON SP1173
X	8621620	X_8621620_SNP [dm3] X_8727587_SNP [dm6]	T	C	2.559e^-4	0.925	INTERGENIC
3R	25530922	3R_25530922_SNP [dm3] 3R_29705200_SNP [dm6]	C	A	2.565e^-4	0.925	INTERGENIC
X	3158647	X_3158647_SNP [dm3] X_3264614_SNP [dm6]	G	C	2.565e^-4	0.925	INTRON dnc
2L	2406891	2L_2406891_SNP [dm3] 2L_2406891_SNP [dm6]	C	T	2.565e^-4	0.925	INTRON VGlut
2L	1458859	2L_1458859_SNP [dm3] 2L_1458859_SNP [dm6]	T	C	2.571e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	12956239	X_12956239_SNP [dm3] X_13062206_SNP [dm6]	T	G	2.578e^-4	0.925	DOWNSTREAM mir-971 INTRON rad
3L	12571398	3L_12571398_SNP [dm3] 3L_12578298_SNP [dm6]	T	C	2.579e^-4	0.925	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	25562573	3R_25562573_SNP [dm3] 3R_29736851_SNP [dm6]	A	G	2.584e^-4	0.925	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	3508677	3L_3508677_SNP [dm3] 3L_3508677_SNP [dm6]	T	A	2.587e^-4	0.925	UTR_3_PRIME CG42324	TF binding site mE1_TFBS_cad
X	20397375	X_20397375_DEL [dm3] X_20526348_DEL [dm6]	TT	T	2.587e^-4	0.925	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	1980099	3L_1980099_SNP [dm3] 3L_1980099_SNP [dm6]	C	T	2.587e^-4	0.925	INTERGENIC
2L	10517683	2L_10517683_SNP [dm3] 2L_10517683_SNP [dm6]	G	A	2.589e^-4	0.925	SYNONYMOUS_CODING Lrr47 UPSTREAM Fatp & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_Ubx
3L	5530484	3L_5530484_SNP [dm3] 3L_5537384_SNP [dm6]	T	A	2.595e^-4	0.925	INTERGENIC
X	21878335	X_21878335_SNP [dm3] X_22476499_SNP [dm6]	G	C	2.596e^-4	0.925	INTRON CG12576
3L	5920311	3L_5920311_SNP [dm3] 3L_5927211_SNP [dm6]	C	A	2.604e^-4	0.925	UPSTREAM Vap-33B INTRON Vap-33B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1677571	2L_1677571_SNP [dm3] 2L_1677571_SNP [dm6]	C	G	2.616e^-4	0.925	INTRON chinmo
3L	5538047	3L_5538047_SNP [dm3] 3L_5544947_SNP [dm6]	G	A	2.622e^-4	0.925	UTR_3_PRIME CG10625 INTRON CG10625
2R	16087329	2R_16087329_SNP [dm3] 2R_20199824_SNP [dm6]	A	T	2.623e^-4	0.925	INTERGENIC
2R	6754986	2R_6754986_SNP [dm3] 2R_10867481_SNP [dm6]	T	C	2.624e^-4	0.925	INTRON CG30015
2L	2406901	2L_2406901_SNP [dm3] 2L_2406901_SNP [dm6]	T	C	2.634e^-4	0.925	INTRON VGlut
3L	6100199	3L_6100199_SNP [dm3] 3L_6107099_SNP [dm6]	C	T	2.637e^-4	0.925	INTRON Ets65A	TF binding site mE1_TFBS_cad
2R	4269378	2R_4269378_SNP [dm3] 2R_8381873_SNP [dm6]	T	C	2.641e^-4	0.925	INTRON pdm3
X	3950492	X_3950492_SNP [dm3] X_4056459_SNP [dm6]	A	T	2.659e^-4	0.925	INTERGENIC
3R	7875430	3R_7875430_SNP [dm3] 3R_12049708_SNP [dm6]	G	A	2.660e^-4	0.925	UPSTREAM CG14739 INTERGENIC
2L	5392656	2L_5392656_SNP [dm3] 2L_5392656_SNP [dm6]	A	G	2.669e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25571021	3R_25571021_SNP [dm3] 3R_29745299_SNP [dm6]	G	A	2.669e^-4	0.925	UPSTREAM IntS11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	18885711	3R_18885711_SNP [dm3] 3R_23059989_SNP [dm6]	G	A	2.671e^-4	0.925	SPLICE_SITE_REGION sav INTRON sav	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14817336	3L_14817336_SNP [dm3] 3L_14824236_SNP [dm6]	G	A	2.672e^-4	0.925	INTRON CG17839
3R	25565981	3R_25565981_SNP [dm3] 3R_29740259_SNP [dm6]	A	G	2.685e^-4	0.925	UPSTREAM CG1969 INTRON CG1969	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	11912371	3L_11912371_SNP [dm3] 3L_11919271_SNP [dm6]	T	A	2.685e^-4	0.925	INTRON CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	14475572	X_14475572_SNP [dm3] X_14581539_SNP [dm6]	T	C	2.691e^-4	0.925	DOWNSTREAM mRpS25 INTRON CG14414	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16878757	2R_16878757_SNP [dm3] 2R_20991252_SNP [dm6]	G	A	2.694e^-4	0.925	UPSTREAM CG3216 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	20525345	X_20525345_SNP [dm3] X_20654318_SNP [dm6]	T	C	2.695e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13653673	X_13653673_SNP [dm3] X_13759640_SNP [dm6]	C	T	2.700e^-4	0.925	SYNONYMOUS_CODING Yp3	TF binding site mE1_TFBS_sens
2R	14325980	2R_14325980_SNP [dm3] 2R_18438475_SNP [dm6]	A	T	2.704e^-4	0.925	INTRON CG30118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3845682	3L_3845682_SNP [dm3] 3L_3845682_SNP [dm6]	C	T	2.743e^-4	0.925	UPSTREAM Awh INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	18013906	2R_18013906_SNP [dm3] 2R_22126401_SNP [dm6]	A	G	2.744e^-4	0.925	SYNONYMOUS_CODING GM130	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5534431	3L_5534431_SNP [dm3] 3L_5541331_SNP [dm6]	C	T	2.745e^-4	0.925	SPLICE_SITE_REGION CG10625 INTRON CG10625	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
2L	3365059	2L_3365059_SNP [dm3] 2L_3365059_SNP [dm6]	G	A	2.749e^-4	0.925	UTR_5_PRIME CG34394 INTRON CG34394	TF binding site mE1_TFBS_cad
3L	7482547	3L_7482547_SNP [dm3] 3L_7489447_SNP [dm6]	C	A	2.751e^-4	0.925	INTERGENIC
2L	10322692	2L_10322692_SNP [dm3] 2L_10322692_SNP [dm6]	A	T	2.751e^-4	0.925	UPSTREAM CG5381 & 1 other INTRON CG5381 & 1 other
3L	5530483	3L_5530483_SNP [dm3] 3L_5537383_SNP [dm6]	A	G	2.760e^-4	0.925	INTERGENIC
3R	25823537	3R_25823537_SNP [dm3] 3R_29997815_SNP [dm6]	C	T	2.762e^-4	0.925	UPSTREAM CG11504 & 1 other DOWNSTREAM Sas-6 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
X	5462515	X_5462515_SNP [dm3] X_5568482_SNP [dm6]	C	T	2.790e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	16355821	3L_16355821_SNP [dm3] 3L_16362721_SNP [dm6]	G	A	2.794e^-4	0.925	SYNONYMOUS_CODING Cpr72Ea UPSTREAM CG45057	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
3R	26105032	3R_26105032_SNP [dm3] 3R_30279310_SNP [dm6]	C	T	2.802e^-4	0.925	SYNONYMOUS_CODING hdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8931764	2L_8931764_SNP [dm3] 2L_8931764_SNP [dm6]	A	C	2.811e^-4	0.925	SYNONYMOUS_CODING CG34398 INTRON CG34398
3R	12744630	3R_12744630_SNP [dm3] 3R_16918908_SNP [dm6]	G	A	2.816e^-4	0.925	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	3845691	3L_3845691_SNP [dm3] 3L_3845691_SNP [dm6]	T	C	2.817e^-4	0.925	UPSTREAM Awh INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	877613	2L_877613_SNP [dm3] 2L_877613_SNP [dm6]	T	C	2.819e^-4	0.925	SYNONYMOUS_CODING ninaA UTR_3_PRIME CG15824 DOWNSTREAM PNUTS & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14834685	3L_14834685_SNP [dm3] 3L_14841585_SNP [dm6]	G	T	2.825e^-4	0.925	INTRON CG17839
3R	15224421	3R_15224421_SNP [dm3] 3R_19398699_SNP [dm6]	A	G	2.825e^-4	0.925	UPSTREAM CG31244 INTRON Ino80
3R	25823531	3R_25823531_SNP [dm3] 3R_29997809_SNP [dm6]	G	A	2.826e^-4	0.925	UPSTREAM CG11504 & 1 other DOWNSTREAM Sas-6 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	19484343	2R_19484343_SNP [dm3] 2R_23596820_SNP [dm6]	G	A	2.829e^-4	0.925	INTRON apt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16878745	2R_16878745_SNP [dm3] 2R_20991240_SNP [dm6]	A	T	2.832e^-4	0.925	UPSTREAM CG3216 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	9775436	2R_9775436_SNP [dm3] 2R_13887931_SNP [dm6]	G	A	2.833e^-4	0.925	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4413229	3R_4413229_SNP [dm3] 3R_8587507_SNP [dm6]	A	G	2.833e^-4	0.925	INTRON 5-HT2B
3L	9875563	3L_9875563_SNP [dm3] 3L_9882463_SNP [dm6]	C	T	2.836e^-4	0.925	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
3R	14103435	3R_14103435_SNP [dm3] 3R_18277713_SNP [dm6]	G	C	2.836e^-4	0.925	DOWNSTREAM CG7142 INTRON eIF-1A
3R	25797302	3R_25797302_SNP [dm3] 3R_29971580_SNP [dm6]	A	G	2.846e^-4	0.925	INTERGENIC
2R	14526810	2R_14526810_INS [dm3] 2R_18639305_INS [dm6]	G	GT	2.848e^-4	0.925	UPSTREAM tRNA:CR30227 & 2 others DOWNSTREAM tRNA:G3:55E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
3L	14807142	3L_14807142_SNP [dm3] 3L_14814042_SNP [dm6]	A	T	2.852e^-4	0.925	INTRON CG17839
2L	13983167	2L_13983167_SNP [dm3] 2L_13983167_SNP [dm6]	G	A	2.853e^-4	0.925	UTR_3_PRIME NimC2 & 1 other DOWNSTREAM NimC2
3R	12043007	3R_12043007_SNP [dm3] 3R_16217285_SNP [dm6]	A	T	2.858e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20298874	2L_20298874_DEL [dm3] 2L_20298874_DEL [dm6]	TTGGGTCGGAATTGGAGAGA...	T	2.866e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10684692	3L_10684692_SNP [dm3] 3L_10691592_SNP [dm6]	G	T	2.870e^-4	0.925	NON_SYNONYMOUS_CODING CG11811 DOWNSTREAM simj & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5530465	3L_5530465_SNP [dm3] 3L_5537365_SNP [dm6]	A	T	2.876e^-4	0.925	INTERGENIC
3L	5530467	3L_5530467_SNP [dm3] 3L_5537367_SNP [dm6]	G	A	2.876e^-4	0.925	INTERGENIC
3R	25576930	3R_25576930_SNP [dm3] 3R_29751208_SNP [dm6]	T	C	2.887e^-4	0.925	SYNONYMOUS_CODING yata	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9915250	2L_9915250_SNP [dm3] 2L_9915250_SNP [dm6]	A	T	2.890e^-4	0.925	UPSTREAM yip2 DOWNSTREAM Srp54 INTERGENIC
3R	8481700	3R_8481700_SNP [dm3] 3R_12655978_SNP [dm6]	C	G	2.893e^-4	0.925	INTRON CG6225
3L	15026791	3L_15026791_SNP [dm3] 3L_15033691_SNP [dm6]	A	G	2.895e^-4	0.925	INTRON Sytbeta
2R	14526859	2R_14526859_SNP [dm3] 2R_18639354_SNP [dm6]	T	A	2.901e^-4	0.925	UPSTREAM tRNA:CR30227 & 2 others DOWNSTREAM tRNA:G3:55E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	14809624	3L_14809624_SNP [dm3] 3L_14816524_SNP [dm6]	C	T	2.904e^-4	0.925	INTRON CG17839
X	5662545	X_5662545_SNP [dm3] X_5768512_SNP [dm6]	T	C	2.905e^-4	0.925	INTRON CG42699 & 1 other
2L	5556565	2L_5556565_SNP [dm3] 2L_5556565_SNP [dm6]	C	T	2.906e^-4	0.925	SPLICE_SITE_REGION GluRIIA INTRON GluRIIA
X	19008770	X_19008770_SNP [dm3] X_19114737_SNP [dm6]	T	A	2.908e^-4	0.925	INTERGENIC
3L	1740392	3L_1740392_SNP [dm3] 3L_1740392_SNP [dm6]	C	T	2.920e^-4	0.925	INTRON Gk
3R	5320110	3R_5320110_SNP [dm3] 3R_9494388_SNP [dm6]	C	A	2.936e^-4	0.925	UPSTREAM CG16779 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5495429	2L_5495429_SNP [dm3] 2L_5495429_SNP [dm6]	G	T	2.941e^-4	0.925	INTERGENIC
3R	10440184	3R_10440184_SNP [dm3] 3R_14614462_SNP [dm6]	T	C	2.943e^-4	0.925	INTRON CG14853
2R	19869596	2R_19869596_SNP [dm3] 2R_23982073_SNP [dm6]	A	G	2.947e^-4	0.925	INTRON Sox14	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12039557	3L_12039557_DEL [dm3] 3L_12046457_DEL [dm6]	AATGTATATAAA...	A	2.948e^-4	0.925	INTRON rols
2L	7388281	2L_7388281_SNP [dm3] 2L_7388281_SNP [dm6]	T	A	2.955e^-4	0.925	UPSTREAM gudu & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	20260649	2L_20260649_SNP [dm3] 2L_20260649_SNP [dm6]	A	G	2.963e^-4	0.925	INTERGENIC
3R	5761722	3R_5761722_SNP [dm3] 3R_9936000_SNP [dm6]	T	A	2.964e^-4	0.925	INTRON Glut4EF	TF binding site mE1_TFBS_chinmo
2L	10809247	2L_10809247_SNP [dm3] 2L_10809247_SNP [dm6]	A	G	2.971e^-4	0.925	INTRON Nos
2L	5549917	2L_5549917_SNP [dm3] 2L_5549917_SNP [dm6]	C	A	2.972e^-4	0.925	SYNONYMOUS_CODING CG14014 DOWNSTREAM Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	25823581	3R_25823581_SNP [dm3] 3R_29997859_SNP [dm6]	A	T	2.972e^-4	0.925	UPSTREAM CG11504 & 1 other DOWNSTREAM Sas-6 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	9915180	2L_9915180_SNP [dm3] 2L_9915180_SNP [dm6]	C	A	2.981e^-4	0.925	UPSTREAM yip2 DOWNSTREAM Srp54 INTERGENIC
3R	25566546	3R_25566546_SNP [dm3] 3R_29740824_SNP [dm6]	C	T	2.991e^-4	0.925	INTRON CG1969
3R	24990935	3R_24990935_SNP [dm3] 3R_29165213_SNP [dm6]	A	G	2.993e^-4	0.925	UPSTREAM CG11898 DOWNSTREAM CG11897 INTERGENIC
3L	14403566	3L_14403566_SNP [dm3] 3L_14410466_SNP [dm6]	A	C	2.999e^-4	0.925	UPSTREAM CG3919 & 1 other EXON CR45233	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	2393193	2L_2393193_SNP [dm3] 2L_2393193_SNP [dm6]	T	C	3.006e^-4	0.925	INTRON VGlut
2L	19753855	2L_19753855_SNP [dm3] 2L_19753855_SNP [dm6]	C	G	3.007e^-4	0.925	SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	8142319	X_8142319_SNP [dm3] X_8248286_SNP [dm6]	T	C	3.007e^-4	0.925	DOWNSTREAM ND75 & 1 other INTERGENIC
3R	14150211	3R_14150211_DEL [dm3] 3R_18324489_DEL [dm6]	TT	T	3.015e^-4	0.925	INTRON CG31235
X	21160844	X_21160844_SNP [dm3] X_21289817_SNP [dm6]	G	C	3.021e^-4	0.925	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3561356	X_3561356_SNP [dm3] X_3667323_SNP [dm6]	C	T	3.027e^-4	0.925	UPSTREAM Ilp7 DOWNSTREAM AstA-R1 INTERGENIC
2R	11718366	2R_11718366_SNP [dm3] 2R_15830861_SNP [dm6]	G	C	3.033e^-4	0.925	INTRON tun & 1 other	regulatory region REDfly_CRMs
2L	12923423	2L_12923423_SNP [dm3] 2L_12923423_SNP [dm6]	T	G	3.035e^-4	0.925	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
3L	10366905	3L_10366905_SNP [dm3] 3L_10373805_SNP [dm6]	A	C	3.049e^-4	0.925	INTERGENIC
X	13248547	X_13248547_SNP [dm3] X_13354514_SNP [dm6]	C	G	3.052e^-4	0.925	INTERGENIC
3R	11248774	3R_11248774_SNP [dm3] 3R_15423052_SNP [dm6]	A	G	3.058e^-4	0.925	SYNONYMOUS_CODING CG6118	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25565874	3R_25565874_SNP [dm3] 3R_29740152_SNP [dm6]	T	G	3.058e^-4	0.925	UPSTREAM CG1969 INTRON CG1969	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	14827010	3L_14827010_SNP [dm3] 3L_14833910_SNP [dm6]	G	T	3.059e^-4	0.925	INTRON CG17839
2L	7167290	2L_7167290_SNP [dm3] 2L_7167290_SNP [dm6]	G	T	3.062e^-4	0.925	INTERGENIC
2R	14326192	2R_14326192_SNP [dm3] 2R_18438687_SNP [dm6]	G	A	3.062e^-4	0.925	INTRON CG30118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1722141	3L_1722141_SNP [dm3] 3L_1722141_SNP [dm6]	A	G	3.076e^-4	0.925	SYNONYMOUS_CODING CG18171 INTRON drpr
X	18732569	X_18732569_SNP [dm3] X_18838536_SNP [dm6]	T	G	3.084e^-4	0.925	INTRON Pvf1
2R	20161833	2R_20161833_SNP [dm3] 2R_24274310_SNP [dm6]	C	T	3.091e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	14331953	2R_14331953_SNP [dm3] 2R_18444448_SNP [dm6]	T	C	3.094e^-4	0.925	SYNONYMOUS_CODING slim
2R	16656392	2R_16656392_SNP [dm3] 2R_20768887_SNP [dm6]	G	C	3.102e^-4	0.925	INTERGENIC
3R	20489343	3R_20489343_SNP [dm3] 3R_24663621_SNP [dm6]	G	A	3.122e^-4	0.925	INTRON slo	regulatory region REDfly_CRMs
2L	20294039	2L_20294039_SNP [dm3] 2L_20294039_SNP [dm6]	T	A	3.123e^-4	0.925	UPSTREAM CG12617 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	6817107	3L_6817107_SNP [dm3] 3L_6824007_SNP [dm6]	A	T	3.132e^-4	0.925	INTERGENIC	regulatory region REDfly_CRMs
X	20525337	X_20525337_SNP [dm3] X_20654310_SNP [dm6]	C	G	3.132e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24232897	3R_24232897_SNP [dm3] 3R_28407175_SNP [dm6]	C	T	3.135e^-4	0.925	INTERGENIC
3L	837721	3L_837721_SNP [dm3] 3L_837721_SNP [dm6]	C	G	3.139e^-4	0.925	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	19787537	2L_19787537_SNP [dm3] 2L_19787537_SNP [dm6]	T	G	3.142e^-4	0.925	INTRON CdGAPr
3R	20610723	3R_20610723_SNP [dm3] 3R_24785001_SNP [dm6]	C	A	3.144e^-4	0.925	UTR_3_PRIME CG5805 DOWNSTREAM CG42331	TF binding site mE1_TFBS_cad
3R	17396078	3R_17396078_SNP [dm3] 3R_21570356_SNP [dm6]	T	C	3.145e^-4	0.925	UTR_3_PRIME InR
3L	2531487	3L_2531487_SNP [dm3] 3L_2531487_SNP [dm6]	T	A	3.147e^-4	0.925	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	14403189	3L_14403189_SNP [dm3] 3L_14410089_SNP [dm6]	T	A	3.155e^-4	0.925	UPSTREAM CG3919 & 1 other DOWNSTREAM CR45233 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	16190575	2R_16190575_SNP [dm3] 2R_20303070_SNP [dm6]	G	C	3.155e^-4	0.925	UPSTREAM CR44641 DOWNSTREAM CR44640 INTERGENIC
2L	1665208	2L_1665208_SNP [dm3] 2L_1665208_SNP [dm6]	C	G	3.164e^-4	0.925	INTRON chinmo
3R	5440336	3R_5440336_SNP [dm3] 3R_9614614_SNP [dm6]	C	T	3.180e^-4	0.925	INTRON CG8312
3R	17846344	3R_17846344_SNP [dm3] 3R_22020622_SNP [dm6]	G	T	3.186e^-4	0.925	INTRON CG6455	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
2R	15039087	2R_15039087_SNP [dm3] 2R_19151582_SNP [dm6]	G	A	3.187e^-4	0.925	INTRON ena	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15358470	X_15358470_SNP [dm3] X_15464437_SNP [dm6]	A	T	3.195e^-4	0.925	UTR_3_PRIME CG6294 UPSTREAM CG6299 INTRON CG6299 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	22249431	3R_22249431_SNP [dm3] 3R_26423709_SNP [dm6]	T	A	3.196e^-4	0.925	DOWNSTREAM CG6503 INTERGENIC
2R	17276770	2R_17276770_SNP [dm3] 2R_21389265_SNP [dm6]	A	G	3.198e^-4	0.925	UTR_3_PRIME Acox57D-p UPSTREAM Acox57D-d
2R	18699136	2R_18699136_SNP [dm3] 2R_22811631_SNP [dm6]	T	G	3.208e^-4	0.925	INTRON stl
2R	6379235	2R_6379235_SNP [dm3] 2R_10491730_SNP [dm6]	C	T	3.213e^-4	0.925	UTR_3_PRIME lola INTRON lola
2R	9331686	2R_9331686_SNP [dm3] 2R_13444181_SNP [dm6]	G	T	3.219e^-4	0.925	SYNONYMOUS_CODING cnn INTRON cnn
3R	25730199	3R_25730199_SNP [dm3] 3R_29904477_SNP [dm6]	T	A	3.219e^-4	0.925	UPSTREAM CG15517 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
3R	15206358	3R_15206358_SNP [dm3] 3R_19380636_SNP [dm6]	G	C	3.223e^-4	0.925	INTRON Ino80
2L	6579782	2L_6579782_SNP [dm3] 2L_6579782_SNP [dm6]	T	A	3.224e^-4	0.925	INTRON CG11319
2R	17106619	2R_17106619_SNP [dm3] 2R_21219114_SNP [dm6]	G	A	3.229e^-4	0.925	SYNONYMOUS_CODING ASPP	TF binding site mE1_TFBS_cad
3L	11525398	3L_11525398_SNP [dm3] 3L_11532298_SNP [dm6]	C	T	3.236e^-4	0.925	INTRON Mob2
2L	1834285	2L_1834285_SNP [dm3] 2L_1834285_SNP [dm6]	A	G	3.243e^-4	0.925	INTERGENIC
3R	10410917	3R_10410917_SNP [dm3] 3R_14585195_SNP [dm6]	A	T	3.248e^-4	0.925	INTRON stumps	TF binding site BDTNP1_TFBS_prd
3R	22651497	3R_22651497_SNP [dm3] 3R_26825775_SNP [dm6]	C	T	3.256e^-4	0.925	INTRON Tl
X	16402532	X_16402532_SNP [dm3] X_16508499_SNP [dm6]	T	C	3.260e^-4	0.925	INTRON para
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	3.261e^-4	0.925	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
2L	20260646	2L_20260646_DEL [dm3] 2L_20260646_DEL [dm6]	TT	T	3.263e^-4	0.925	INTERGENIC
3R	25546509	3R_25546509_SNP [dm3] 3R_29720787_SNP [dm6]	A	T	3.264e^-4	0.925	INTRON CG15506
2L	9914936	2L_9914936_SNP [dm3] 2L_9914936_SNP [dm6]	A	T	3.277e^-4	0.925	UTR_3_PRIME Srp54 UPSTREAM yip2
3L	6928239	3L_6928239_SNP [dm3] 3L_6935139_SNP [dm6]	T	A	3.284e^-4	0.925	DOWNSTREAM CR45415 & 1 other INTERGENIC
3L	10364712	3L_10364712_SNP [dm3] 3L_10371612_SNP [dm6]	C	T	3.293e^-4	0.925	INTERGENIC
3R	25562975	3R_25562975_SNP [dm3] 3R_29737253_SNP [dm6]	A	G	3.295e^-4	0.925	SYNONYMOUS_CODING CG7598 UPSTREAM CG7601	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Ubx
3L	7358964	3L_7358964_SNP [dm3] 3L_7365864_SNP [dm6]	C	A	3.295e^-4	0.925	NON_SYNONYMOUS_CODING Sh3beta DOWNSTREAM Sh3beta INTRON Sh3beta	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14154432	X_14154432_SNP [dm3] X_14260399_SNP [dm6]	A	T	3.303e^-4	0.925	UPSTREAM CG1461 INTERGENIC
2R	12993893	2R_12993893_SNP [dm3] 2R_17106388_SNP [dm6]	G	A	3.304e^-4	0.925	INTRON CG30456	TF binding site mE1_TFBS_cad
3R	13309297	3R_13309297_SNP [dm3] 3R_17483575_SNP [dm6]	G	T	3.319e^-4	0.925	INTRON Dscam3
3R	15214334	3R_15214334_SNP [dm3] 3R_19388612_SNP [dm6]	T	C	3.327e^-4	0.925	SYNONYMOUS_CODING CG3734 INTRON Ino80	TF binding site mE1_TFBS_sens
3R	11249566	3R_11249566_SNP [dm3] 3R_15423844_SNP [dm6]	A	G	3.329e^-4	0.925	SYNONYMOUS_CODING CG6118	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20298733	2L_20298733_SNP [dm3] 2L_20298733_SNP [dm6]	G	A	3.342e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	7873541	2R_7873541_SNP [dm3] 2R_11986036_SNP [dm6]	C	T	3.343e^-4	0.925	START_GAINED CG34231 UTR_5_PRIME CG34231 UPSTREAM RnrS DOWNSTREAM rho-7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	4362495	2R_4362495_SNP [dm3] 2R_8474990_SNP [dm6]	G	A	3.344e^-4	0.925	UTR_3_PRIME mtt
3L	12093236	3L_12093236_INS [dm3] 3L_12100136_INS [dm6]	G	GCATC	3.350e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11922572	3L_11922572_SNP [dm3] 3L_11929472_SNP [dm6]	G	A	3.350e^-4	0.925	INTRON CG44837 & 1 other
X	7620883	X_7620883_SNP [dm3] X_7726850_SNP [dm6]	G	A	3.353e^-4	0.925	SYNONYMOUS_CODING NELF-B DOWNSTREAM Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7628446	3L_7628446_SNP [dm3] 3L_7635346_SNP [dm6]	T	C	3.354e^-4	0.925	INTRON CG33275	TF binding site mE1_TFBS_HSA
2R	1572848	2R_1572848_SNP [dm3] 2R_5685343_SNP [dm6]	A	C	3.356e^-4	0.925	INTRON scaf
X	13126612	X_13126612_SNP [dm3] X_13232579_SNP [dm6]	G	T	3.358e^-4	0.925	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18626314	3R_18626314_SNP [dm3] 3R_22800592_SNP [dm6]	A	T	3.369e^-4	0.925	INTERGENIC
2R	15751359	2R_15751359_INS [dm3] 2R_19863854_INS [dm6]	A	AA	3.372e^-4	0.925	UPSTREAM Obp56i INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	25570840	3R_25570840_SNP [dm3] 3R_29745118_SNP [dm6]	C	T	3.383e^-4	0.925	UPSTREAM IntS11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20287632	2L_20287632_DEL [dm3] 2L_20287632_DEL [dm6]	TTAAGGGGGAGTGGT...	T	3.392e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	5165363	2L_5165363_SNP [dm3] 2L_5165363_SNP [dm6]	T	A	3.401e^-4	0.925	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	9999388	3L_9999388_SNP [dm3] 3L_10006288_SNP [dm6]	C	T	3.404e^-4	0.925	INTRON dpr6
2L	10797835	2L_10797835_SNP [dm3] 2L_10797835_SNP [dm6]	C	T	3.415e^-4	0.925	INTRON CG31869
3R	2868311	3R_2868311_INS [dm3] 3R_7042589_INS [dm6]	C	CGGA	3.424e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	10944155	2L_10944155_SNP [dm3] 2L_10944155_SNP [dm6]	C	T	3.428e^-4	0.925	UPSTREAM CR44493 INTRON dpr2
X	21947178	X_21947178_SNP [dm3] X_22545342_SNP [dm6]	A	T	3.434e^-4	0.925	INTERGENIC	transposable element FlyBase
2L	5165362	2L_5165362_SNP [dm3] 2L_5165362_SNP [dm6]	A	C	3.440e^-4	0.925	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	8401265	2L_8401265_SNP [dm3] 2L_8401265_SNP [dm6]	T	G	3.441e^-4	0.925	NON_SYNONYMOUS_CODING CG31898 DOWNSTREAM fy
2L	8401379	2L_8401379_SNP [dm3] 2L_8401379_SNP [dm6]	A	G	3.441e^-4	0.925	NON_SYNONYMOUS_CODING CG31898 DOWNSTREAM fy
2L	6309098	2L_6309098_SNP [dm3] 2L_6309098_SNP [dm6]	G	A	3.442e^-4	0.925	NON_SYNONYMOUS_CODING CG13984 UPSTREAM CG43922 INTRON Ddr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9944661	3R_9944661_SNP [dm3] 3R_14118939_SNP [dm6]	C	T	3.442e^-4	0.925	UPSTREAM Kif19A DOWNSTREAM Abi INTERGENIC
2R	15839563	2R_15839563_SNP [dm3] 2R_19952058_SNP [dm6]	C	T	3.444e^-4	0.925	DOWNSTREAM CG10822 INTERGENIC
3L	16447696	3L_16447696_SNP [dm3] 3L_16454596_SNP [dm6]	T	G	3.445e^-4	0.925	INTRON CG33158	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	1728797	3L_1728797_SNP [dm3] 3L_1728797_SNP [dm6]	A	G	3.445e^-4	0.925	INTRON drpr	TF binding site mE1_TFBS_cnc mE1_TFBS_sens
2R	16458955	2R_16458955_SNP [dm3] 2R_20571450_SNP [dm6]	C	T	3.450e^-4	0.925	INTRON qsm
3R	25151249	3R_25151249_SNP [dm3] 3R_29325527_SNP [dm6]	T	G	3.452e^-4	0.925	INTERGENIC
3R	18890872	3R_18890872_SNP [dm3] 3R_23065150_SNP [dm6]	C	T	3.470e^-4	0.925	INTRON CG17111	TF binding site mE1_TFBS_cad
3L	14785088	3L_14785088_SNP [dm3] 3L_14791988_SNP [dm6]	A	G	3.472e^-4	0.925	INTRON CG9425
3R	25562480	3R_25562480_SNP [dm3] 3R_29736758_SNP [dm6]	G	A	3.474e^-4	0.925	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	25562481	3R_25562481_SNP [dm3] 3R_29736759_SNP [dm6]	C	G	3.474e^-4	0.925	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	9441548	X_9441548_SNP [dm3] X_9547515_SNP [dm6]	T	G	3.481e^-4	0.925	INTRON CG32700
2L	877766	2L_877766_SNP [dm3] 2L_877766_SNP [dm6]	C	T	3.481e^-4	0.925	SYNONYMOUS_CODING ninaA UTR_3_PRIME CG15824 DOWNSTREAM PNUTS & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	14840917	X_14840917_SNP [dm3] X_14946884_SNP [dm6]	T	C	3.488e^-4	0.925	INTRON pdgy
3L	11922705	3L_11922705_SNP [dm3] 3L_11929605_SNP [dm6]	T	A	3.494e^-4	0.925	INTRON CG44837 & 1 other
3L	14807384	3L_14807384_SNP [dm3] 3L_14814284_SNP [dm6]	C	T	3.500e^-4	0.925	INTRON CG17839
3R	15214342	3R_15214342_SNP [dm3] 3R_19388620_SNP [dm6]	T	G	3.506e^-4	0.925	NON_SYNONYMOUS_CODING CG3734 INTRON Ino80	TF binding site mE1_TFBS_sens
3R	22651486	3R_22651486_SNP [dm3] 3R_26825764_SNP [dm6]	T	A	3.508e^-4	0.925	INTRON Tl
3L	3340382	3L_3340382_SNP [dm3] 3L_3340382_SNP [dm6]	T	C	3.509e^-4	0.925	INTRON kst
3L	5530563	3L_5530563_SNP [dm3] 3L_5537463_SNP [dm6]	G	A	3.518e^-4	0.925	DOWNSTREAM CG10625 INTERGENIC
3R	5971488	3R_5971488_INS [dm3] 3R_10145766_INS [dm6]	A	AAAT	3.519e^-4	0.925	INTRON Invadolysin	TF binding site BDTNP1_TFBS_dl
X	3727944	X_3727944_SNP [dm3] X_3833911_SNP [dm6]	T	G	3.519e^-4	0.925	INTRON ec
X	4612856	X_4612856_INS [dm3] X_4718823_INS [dm6]	C	CAC	3.525e^-4	0.925	INTRON Proc-R
2R	12994085	2R_12994085_SNP [dm3] 2R_17106580_SNP [dm6]	A	T	3.532e^-4	0.925	INTRON CG30456	TF binding site mE1_TFBS_cad
3R	25727411	3R_25727411_SNP [dm3] 3R_29901689_SNP [dm6]	C	T	3.542e^-4	0.925	INTRON CG31038
3R	25729467	3R_25729467_SNP [dm3] 3R_29903745_SNP [dm6]	A	C	3.542e^-4	0.925	NON_SYNONYMOUS_CODING CG15517 DOWNSTREAM CG31038	TF binding site mE1_TFBS_bab1
3L	14108431	3L_14108431_SNP [dm3] 3L_14115331_SNP [dm6]	A	T	3.546e^-4	0.925	INTRON Sox21b
3L	1094374	3L_1094374_SNP [dm3] 3L_1094374_SNP [dm6]	A	G	3.547e^-4	0.925	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3849885	3L_3849885_SNP [dm3] 3L_3849885_SNP [dm6]	G	C	3.552e^-4	0.925	INTRON Awh	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad
2R	14331818	2R_14331818_SNP [dm3] 2R_18444313_SNP [dm6]	C	A	3.560e^-4	0.925	INTRON slim
3L	2531516	3L_2531516_SNP [dm3] 3L_2531516_SNP [dm6]	A	G	3.561e^-4	0.925	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	20298814	3R_20298814_SNP [dm3] 3R_24473092_SNP [dm6]	C	T	3.562e^-4	0.925	INTERGENIC
X	15148393	X_15148393_SNP [dm3] X_15254360_SNP [dm6]	T	C	3.563e^-4	0.925	INTERGENIC
3R	15214306	3R_15214306_SNP [dm3] 3R_19388584_SNP [dm6]	A	T	3.571e^-4	0.925	SYNONYMOUS_CODING CG3734 INTRON Ino80	TF binding site mE1_TFBS_sens
3L	17596797	3L_17596797_SNP [dm3] 3L_17603697_SNP [dm6]	A	C	3.575e^-4	0.925	INTRON Eip74EF
3L	5144472	3L_5144472_SNP [dm3] 3L_5151372_SNP [dm6]	T	G	3.594e^-4	0.925	INTRON Gen	TF binding site mE1_TFBS_HSA
3L	11922600	3L_11922600_SNP [dm3] 3L_11929500_SNP [dm6]	C	G	3.596e^-4	0.925	INTRON CG44837 & 1 other
3L	671757	3L_671757_SNP [dm3] 3L_671757_SNP [dm6]	C	T	3.605e^-4	0.925	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11927532	3L_11927532_SNP [dm3] 3L_11934432_SNP [dm6]	G	T	3.614e^-4	0.925	SYNONYMOUS_CODING byn INTRON CG44837	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	521376	3L_521376_SNP [dm3] 3L_521376_SNP [dm6]	A	G	3.626e^-4	0.925	INTRON klar
3R	5895763	3R_5895763_SNP [dm3] 3R_10070041_SNP [dm6]	C	A	3.632e^-4	0.925	INTERGENIC
3R	26331822	3R_26331822_SNP [dm3] 3R_30506100_SNP [dm6]	A	G	3.633e^-4	0.925	NON_SYNONYMOUS_CODING CG15539 UTR_5_PRIME CG15539 UPSTREAM PH4alphaSG1 & 1 other
3R	3151330	3R_3151330_SNP [dm3] 3R_7325608_SNP [dm6]	A	T	3.636e^-4	0.925	START_GAINED CG44335 UTR_5_PRIME CG44335 DOWNSTREAM CR44336
2R	19842302	2R_19842302_SNP [dm3] 2R_23954779_SNP [dm6]	C	T	3.648e^-4	0.925	SYNONYMOUS_CODING thoc5 UPSTREAM CG3803	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11320149	2R_11320149_SNP [dm3] 2R_15432644_SNP [dm6]	T	A	3.650e^-4	0.925	INTRON CG43729
2R	15468686	2R_15468686_SNP [dm3] 2R_19581181_SNP [dm6]	C	T	3.673e^-4	0.925	INTRON sm
2L	19217493	2L_19217493_SNP [dm3] 2L_19217493_SNP [dm6]	T	C	3.678e^-4	0.925	EXON CR44189	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_sens
2R	14324339	2R_14324339_SNP [dm3] 2R_18436834_SNP [dm6]	T	G	3.681e^-4	0.925	INTRON CG30118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	15895240	3R_15895240_DEL [dm3] 3R_20069518_DEL [dm6]	ATA	A	3.685e^-4	0.925	INTERGENIC
2R	13435236	2R_13435236_SNP [dm3] 2R_17547731_SNP [dm6]	T	C	3.714e^-4	0.925	UPSTREAM MESR4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
3R	8494475	3R_8494475_SNP [dm3] 3R_12668753_SNP [dm6]	C	A	3.722e^-4	0.925	UTR_5_PRIME CG14395	TF binding site mE1_TFBS_chinmo
3L	9199297	3L_9199297_SNP [dm3] 3L_9206197_SNP [dm6]	C	A	3.729e^-4	0.925	INTRON Slc45-1
X	19011939	X_19011939_SNP [dm3] X_19117906_SNP [dm6]	C	A	3.732e^-4	0.925	INTERGENIC
3L	12723380	3L_12723380_SNP [dm3] 3L_12730280_SNP [dm6]	T	A	3.734e^-4	0.925	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	3528873	2L_3528873_SNP [dm3] 2L_3528873_SNP [dm6]	T	G	3.735e^-4	0.925	SYNONYMOUS_CODING Spindly
2R	18699185	2R_18699185_SNP [dm3] 2R_22811680_SNP [dm6]	G	C	3.748e^-4	0.925	INTRON stl
2R	16458924	2R_16458924_SNP [dm3] 2R_20571419_SNP [dm6]	T	A	3.748e^-4	0.925	INTRON qsm
2L	12147882	2L_12147882_SNP [dm3] 2L_12147882_SNP [dm6]	T	C	3.751e^-4	0.925	INTRON CG31760
2L	17385513	2L_17385513_SNP [dm3] 2L_17385513_SNP [dm6]	C	A	3.752e^-4	0.925	UPSTREAM CLIP-190 INTRON CLIP-190	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Ubx
3R	25565949	3R_25565949_DEL [dm3] 3R_29740227_DEL [dm6]	ATAGCAAATGA...	A	3.754e^-4	0.925	UPSTREAM CG1969 INTRON CG1969	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	8478757	3R_8478757_SNP [dm3] 3R_12653035_SNP [dm6]	A	G	3.758e^-4	0.925	DOWNSTREAM Dtg INTERGENIC
2L	8508568	2L_8508568_SNP [dm3] 2L_8508568_SNP [dm6]	A	T	3.761e^-4	0.925	DOWNSTREAM CG13096 INTERGENIC
3R	18887084	3R_18887084_SNP [dm3] 3R_23061362_SNP [dm6]	T	A	3.767e^-4	0.925	UPSTREAM Ublcp1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	27506287	3R_27506287_SNP [dm3] 3R_31680565_SNP [dm6]	C	T	3.769e^-4	0.925	UPSTREAM CG11550 DOWNSTREAM CR44091 INTERGENIC
2L	19234291	2L_19234291_INS [dm3] 2L_19234291_INS [dm6]	G	GTGCGTCGTCGAAGGG...	3.773e^-4	0.925	INTERGENIC
2L	19780905	2L_19780905_SNP [dm3] 2L_19780905_SNP [dm6]	C	A	3.778e^-4	0.925	SYNONYMOUS_CODING CdGAPr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1172112	3L_1172112_SNP [dm3] 3L_1172112_SNP [dm6]	C	G	3.779e^-4	0.925	INTRON bab2	regulatory region REDfly_CRMs
3L	7009981	3L_7009981_SNP [dm3] 3L_7016881_SNP [dm6]	T	C	3.781e^-4	0.925	INTRON Mp
3L	515840	3L_515840_DEL [dm3] 3L_515840_DEL [dm6]	AA	A	3.784e^-4	0.925	INTRON klar
2L	6076563	2L_6076563_SNP [dm3] 2L_6076563_SNP [dm6]	T	C	3.784e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8400101	2L_8400101_SNP [dm3] 2L_8400101_SNP [dm6]	C	T	3.785e^-4	0.925	UPSTREAM CG31898 DOWNSTREAM CG13386 INTERGENIC
X	4539797	X_4539797_SNP [dm3] X_4645764_SNP [dm6]	A	G	3.790e^-4	0.925	UTR_3_PRIME HLH4C UPSTREAM CG3062	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1026604	2L_1026604_SNP [dm3] 2L_1026604_SNP [dm6]	G	A	3.791e^-4	0.925	NON_SYNONYMOUS_CODING CG4375 INTRON IA-2
3R	26989557	3R_26989557_SNP [dm3] 3R_31163835_SNP [dm6]	A	G	3.798e^-4	0.925	INTRON Gycbeta100B & 1 other
2L	16769803	2L_16769803_SNP [dm3] 2L_16769803_SNP [dm6]	C	G	3.799e^-4	0.925	INTRON Mhc
3R	11741495	3R_11741495_SNP [dm3] 3R_15915773_SNP [dm6]	T	C	3.799e^-4	0.925	SYNONYMOUS_CODING CG45105	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	20282905	2L_20282905_SNP [dm3] 2L_20282905_SNP [dm6]	T	A	3.801e^-4	0.925	INTERGENIC	TF binding site mE1_TFBS_cad
3L	5530567	3L_5530567_SNP [dm3] 3L_5537467_SNP [dm6]	G	A	3.807e^-4	0.925	DOWNSTREAM CG10625 INTERGENIC
3R	25729485	3R_25729485_SNP [dm3] 3R_29903763_SNP [dm6]	G	A	3.808e^-4	0.925	SYNONYMOUS_CODING CG15517 DOWNSTREAM CG31038	TF binding site mE1_TFBS_bab1
3L	14013325	3L_14013325_DEL [dm3] 3L_14020225_DEL [dm6]	TCGGTGGCTTT...	T	3.809e^-4	0.925	DOWNSTREAM ptip & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	26195106	3R_26195106_SNP [dm3] 3R_30369384_SNP [dm6]	A	T	3.810e^-4	0.925	UTR_3_PRIME hdc
2L	18513274	2L_18513274_SNP [dm3] 2L_18513274_SNP [dm6]	G	A	3.813e^-4	0.925	SYNONYMOUS_CODING CG10178
2L	1476772	2L_1476772_SNP [dm3] 2L_1476772_SNP [dm6]	T	C	3.815e^-4	0.925	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22074112	3R_22074112_SNP [dm3] 3R_26248390_SNP [dm6]	T	C	3.816e^-4	0.925	INTRON CR42745	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	20843276	3R_20843276_SNP [dm3] 3R_25017554_SNP [dm6]	A	C	3.820e^-4	0.925	SYNONYMOUS_CODING tnc
X	9499442	X_9499442_SNP [dm3] X_9605409_SNP [dm6]	C	T	3.823e^-4	0.925	SYNONYMOUS_CODING Lst8 DOWNSTREAM Aats-lys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	14815037	3L_14815037_SNP [dm3] 3L_14821937_SNP [dm6]	A	C	3.827e^-4	0.925	INTRON CG17839
3R	13309789	3R_13309789_SNP [dm3] 3R_17484067_SNP [dm6]	G	A	3.827e^-4	0.925	INTRON Dscam3
3R	22435414	3R_22435414_SNP [dm3] 3R_26609692_SNP [dm6]	G	T	3.830e^-4	0.925	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	11728564	X_11728564_SNP [dm3] X_11834531_SNP [dm6]	C	A	3.839e^-4	0.925	DOWNSTREAM rudhira INTRON rudhira
2L	2026005	2L_2026005_SNP [dm3] 2L_2026005_SNP [dm6]	A	G	3.840e^-4	0.925	INTRON CG4238
3R	13314313	3R_13314313_SNP [dm3] 3R_17488591_SNP [dm6]	C	T	3.842e^-4	0.925	INTRON Dscam3
3R	17742036	3R_17742036_DEL [dm3] 3R_21916314_DEL [dm6]	GTG	G	3.854e^-4	0.925	DOWNSTREAM CG17843 INTERGENIC
3L	6688076	3L_6688076_SNP [dm3] 3L_6694976_SNP [dm6]	G	T	3.863e^-4	0.925	INTRON SP1173
2L	9915389	2L_9915389_SNP [dm3] 2L_9915389_SNP [dm6]	A	G	3.865e^-4	0.925	DOWNSTREAM Srp54 INTRON yip2
2L	13824449	2L_13824449_SNP [dm3] 2L_13824449_SNP [dm6]	G	A	3.865e^-4	0.925	SYNONYMOUS_CODING tam DOWNSTREAM b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14403726	3L_14403726_SNP [dm3] 3L_14410626_SNP [dm6]	T	A	3.867e^-4	0.925	UTR_5_PRIME CG3919 UPSTREAM stwl EXON CR45233	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	14154449	X_14154449_SNP [dm3] X_14260416_SNP [dm6]	G	T	3.876e^-4	0.925	UPSTREAM CG1461 INTERGENIC
X	18992586	X_18992586_SNP [dm3] X_19098553_SNP [dm6]	G	C	3.881e^-4	0.925	INTERGENIC
2R	13360544	2R_13360544_SNP [dm3] 2R_17473039_SNP [dm6]	T	C	3.889e^-4	0.925	INTRON qkr54B
2R	16656263	2R_16656263_SNP [dm3] 2R_20768758_SNP [dm6]	A	T	3.891e^-4	0.925	DOWNSTREAM CR44665 INTERGENIC
3L	10519259	3L_10519259_SNP [dm3] 3L_10526159_SNP [dm6]	C	T	3.892e^-4	0.925	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16899060	3R_16899060_DEL [dm3] 3R_21073338_DEL [dm6]	TGT	T	3.898e^-4	0.925	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad
3L	7948802	3L_7948802_SNP [dm3] 3L_7955702_SNP [dm6]	A	G	3.901e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3845695	3L_3845695_SNP [dm3] 3L_3845695_SNP [dm6]	A	C	3.924e^-4	0.925	UPSTREAM Awh INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	1715140	3L_1715140_SNP [dm3] 3L_1715140_SNP [dm6]	T	A	3.940e^-4	0.925	UTR_3_PRIME CG7991 DOWNSTREAM drpr
X	14262103	X_14262103_SNP [dm3] X_14368070_SNP [dm6]	A	G	3.942e^-4	0.925	INTRON dpr8
3R	19659471	3R_19659471_SNP [dm3] 3R_23833749_SNP [dm6]	A	T	3.954e^-4	0.925	INTRON CG34355
3L	11727345	3L_11727345_SNP [dm3] 3L_11734245_SNP [dm6]	T	G	3.955e^-4	0.925	UTR_3_PRIME CG6024 DOWNSTREAM CG32087
3L	18370996	3L_18370996_SNP [dm3] 3L_18377896_SNP [dm6]	C	T	3.959e^-4	0.925	INTERGENIC
X	8280108	X_8280108_SNP [dm3] X_8386075_SNP [dm6]	C	T	3.960e^-4	0.925	UTR_5_PRIME CG1387
3L	1731975	3L_1731975_SNP [dm3] 3L_1731975_SNP [dm6]	C	T	3.963e^-4	0.925	SYNONYMOUS_CODING Oseg4 UPSTREAM drpr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5560798	2L_5560798_SNP [dm3] 2L_5560798_SNP [dm6]	C	T	3.963e^-4	0.925	SYNONYMOUS_CODING GluRIIB
3L	12571334	3L_12571334_SNP [dm3] 3L_12578234_SNP [dm6]	A	T	3.972e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10519258	3L_10519258_SNP [dm3] 3L_10526158_SNP [dm6]	G	T	3.983e^-4	0.925	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16139032	X_16139032_SNP [dm3] X_16244999_SNP [dm6]	A	G	3.990e^-4	0.925	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	12025610	3L_12025610_SNP [dm3] 3L_12032510_SNP [dm6]	A	T	3.995e^-4	0.925	UPSTREAM CG43993 INTRON rols
3L	428271	3L_428271_SNP [dm3] 3L_428271_SNP [dm6]	T	A	3.999e^-4	0.925	INTERGENIC
3R	13152073	3R_13152073_SNP [dm3] 3R_17326351_SNP [dm6]	T	G	4.003e^-4	0.925	INTRON beat-IIa
X	18568552	X_18568552_SNP [dm3] X_18674519_SNP [dm6]	G	A	4.007e^-4	0.925	INTERGENIC
3L	10529633	3L_10529633_SNP [dm3] 3L_10536533_SNP [dm6]	A	T	4.009e^-4	0.925	INTRON A2bp1
2L	8401500	2L_8401500_SNP [dm3] 2L_8401500_SNP [dm6]	A	G	4.014e^-4	0.925	UTR_3_PRIME fy & 1 other
2R	13763940	2R_13763940_SNP [dm3] 2R_17876435_SNP [dm6]	G	A	4.015e^-4	0.925	INTRON Elk
3R	14634108	3R_14634108_SNP [dm3] 3R_18808386_SNP [dm6]	A	C	4.020e^-4	0.925	INTRON CG18208
2R	13355469	2R_13355469_SNP [dm3] 2R_17467964_SNP [dm6]	T	C	4.020e^-4	0.925	SYNONYMOUS_CODING Tes	TF binding site mE1_TFBS_sens
3R	13793925	3R_13793925_SNP [dm3] 3R_17968203_SNP [dm6]	C	T	4.021e^-4	0.925	INTRON cpo
3L	6146285	3L_6146285_SNP [dm3] 3L_6153185_SNP [dm6]	T	C	4.023e^-4	0.925	UPSTREAM Acp65Aa INTERGENIC
2L	14122364	2L_14122364_DEL [dm3] 2L_14122364_DEL [dm6]	CATTTTAATTCGTGTC...	C	4.024e^-4	0.925	INTERGENIC
2L	5544001	2L_5544001_SNP [dm3] 2L_5544001_SNP [dm6]	T	A	4.024e^-4	0.925	INTRON Lam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	3718148	3L_3718148_SNP [dm3] 3L_3718148_SNP [dm6]	T	A	4.030e^-4	0.925	INTRON CG32264
X	14778005	X_14778005_SNP [dm3] X_14883972_SNP [dm6]	A	G	4.040e^-4	0.925	INTRON Flo2
3L	5503177	3L_5503177_SNP [dm3] 3L_5510077_SNP [dm6]	T	G	4.069e^-4	0.925	INTRON CG34342
2L	715569	2L_715569_SNP [dm3] 2L_715569_SNP [dm6]	A	T	4.070e^-4	0.925	UPSTREAM ds DOWNSTREAM CR44988 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	12700695	2R_12700695_SNP [dm3] 2R_16813190_SNP [dm6]	C	T	4.072e^-4	0.925	DOWNSTREAM CR44379 INTERGENIC
X	8928275	X_8928275_SNP [dm3] X_9034242_SNP [dm6]	C	T	4.075e^-4	0.925	INTRON CR43836 & 1 other
3R	22074117	3R_22074117_SNP [dm3] 3R_26248395_SNP [dm6]	T	A	4.079e^-4	0.925	INTRON CR42745	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	20906498	3L_20906498_SNP [dm3] 3L_20913398_SNP [dm6]	A	T	4.093e^-4	0.925	DOWNSTREAM CR45733 INTRON CR43930
2L	20245851	2L_20245851_SNP [dm3] 2L_20245851_SNP [dm6]	C	T	4.095e^-4	0.925	INTERGENIC
2L	11492774	2L_11492774_SNP [dm3] 2L_11492774_SNP [dm6]	A	G	4.101e^-4	0.925	INTERGENIC
2R	11571935	2R_11571935_SNP [dm3] 2R_15684430_SNP [dm6]	G	T	4.102e^-4	0.925	SYNONYMOUS_CODING Ranbp11 DOWNSTREAM CG30082 EXON CR43429	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12025607	3L_12025607_SNP [dm3] 3L_12032507_SNP [dm6]	T	C	4.109e^-4	0.925	UPSTREAM CG43993 INTRON rols
2R	14326426	2R_14326426_SNP [dm3] 2R_18438921_SNP [dm6]	C	A	4.127e^-4	0.925	INTRON CG30118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	4292838	2L_4292838_SNP [dm3] 2L_4292838_SNP [dm6]	G	T	4.129e^-4	0.925	INTRON tutl
3R	5890647	3R_5890647_SNP [dm3] 3R_10064925_SNP [dm6]	G	C	4.142e^-4	0.925	DOWNSTREAM CG33631 INTERGENIC
3L	442004	3L_442004_SNP [dm3] 3L_442004_SNP [dm6]	G	A	4.151e^-4	0.925	UPSTREAM klar DOWNSTREAM klar INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
3R	27198071	3R_27198071_SNP [dm3] 3R_31372349_SNP [dm6]	A	T	4.155e^-4	0.925	UPSTREAM gskt DOWNSTREAM CG34347 INTERGENIC
3L	14403196	3L_14403196_SNP [dm3] 3L_14410096_SNP [dm6]	C	G	4.156e^-4	0.925	UPSTREAM CG3919 & 1 other DOWNSTREAM CR45233 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	6016751	2R_6016751_SNP [dm3] 2R_10129246_SNP [dm6]	A	T	4.162e^-4	0.925	INTRON gem	TF binding site mE1_TFBS_HSA
3L	11922601	3L_11922601_SNP [dm3] 3L_11929501_SNP [dm6]	A	C	4.168e^-4	0.925	INTRON CG44837 & 1 other
3L	1734509	3L_1734509_SNP [dm3] 3L_1734509_SNP [dm6]	G	A	4.168e^-4	0.925	SYNONYMOUS_CODING Oseg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	7273988	3R_7273988_SNP [dm3] 3R_11448266_SNP [dm6]	C	T	4.168e^-4	0.925	UTR_5_PRIME sals INTRON CG17230 & 1 other
3L	22484887	3L_22484887_SNP [dm3] 3L_22491787_SNP [dm6]	A	T	4.169e^-4	0.925	INTERGENIC
2L	1303998	2L_1303998_SNP [dm3] 2L_1303998_SNP [dm6]	G	T	4.170e^-4	0.925	INTERGENIC
2L	5543854	2L_5543854_SNP [dm3] 2L_5543854_SNP [dm6]	G	A	4.177e^-4	0.925	INTRON Lam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	6100247	3L_6100247_SNP [dm3] 3L_6107147_SNP [dm6]	C	T	4.187e^-4	0.925	INTRON Ets65A	TF binding site mE1_TFBS_cad
3R	26362152	3R_26362152_SNP [dm3] 3R_30536430_SNP [dm6]	C	T	4.188e^-4	0.925	INTRON tmod
3L	837603	3L_837603_SNP [dm3] 3L_837603_SNP [dm6]	C	T	4.212e^-4	0.925	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3R	8477836	3R_8477836_SNP [dm3] 3R_12652114_SNP [dm6]	C	A	4.222e^-4	0.925	NON_SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_sens
2L	4020688	2L_4020688_INS [dm3] 2L_4020688_INS [dm6]	A	ATC	4.231e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13175133	3R_13175133_SNP [dm3] 3R_17349411_SNP [dm6]	A	C	4.231e^-4	0.925	INTRON beat-IIa
3L	6300957	3L_6300957_SNP [dm3] 3L_6307857_SNP [dm6]	T	C	4.233e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo
3L	12691092	3L_12691092_INS [dm3] 3L_12697992_INS [dm6]	C	CAATTCAATGTGTATGC...	4.240e^-4	0.925	INTRON mirr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12000085	2R_12000085_SNP [dm3] 2R_16112580_SNP [dm6]	A	T	4.247e^-4	0.925	INTRON Asph
2L	3571681	2L_3571681_SNP [dm3] 2L_3571681_SNP [dm6]	T	C	4.249e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	1557440	2L_1557440_SNP [dm3] 2L_1557440_SNP [dm6]	C	T	4.250e^-4	0.925	INTRON haf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1733205	3L_1733205_SNP [dm3] 3L_1733205_SNP [dm6]	C	T	4.255e^-4	0.925	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	5963561	3R_5963561_SNP [dm3] 3R_10137839_SNP [dm6]	T	C	4.265e^-4	0.925	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	20268650	2L_20268650_SNP [dm3] 2L_20268650_SNP [dm6]	C	A	4.289e^-4	0.925	INTERGENIC
X	20525401	X_20525401_SNP [dm3] X_20654374_SNP [dm6]	T	C	4.295e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10519225	3L_10519225_SNP [dm3] 3L_10526125_SNP [dm6]	T	G	4.313e^-4	0.925	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13248555	X_13248555_SNP [dm3] X_13354522_SNP [dm6]	T	C	4.314e^-4	0.925	INTERGENIC
3L	1731275	3L_1731275_SNP [dm3] 3L_1731275_SNP [dm6]	A	G	4.333e^-4	0.925	UTR_3_PRIME Oseg4 UPSTREAM drpr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1733121	3L_1733121_SNP [dm3] 3L_1733121_SNP [dm6]	A	G	4.336e^-4	0.925	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8930908	2L_8930908_DEL [dm3] 2L_8930908_DEL [dm6]	GTAATTTTTACTAGTTCAAA...	G	4.341e^-4	0.925	INTRON CG34398	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4979575	3L_4979575_SNP [dm3] 3L_4979575_SNP [dm6]	G	A	4.344e^-4	0.925	DOWNSTREAM CG17030 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1026609	2L_1026609_SNP [dm3] 2L_1026609_SNP [dm6]	A	G	4.345e^-4	0.925	SYNONYMOUS_CODING CG4375 INTRON IA-2
2L	5560553	2L_5560553_SNP [dm3] 2L_5560553_SNP [dm6]	A	G	4.358e^-4	0.925	INTRON GluRIIB
X	4206710	X_4206710_SNP [dm3] X_4312677_SNP [dm6]	A	G	4.378e^-4	0.925	UPSTREAM CG15579 INTRON CR44957
3R	23325494	3R_23325494_SNP [dm3] 3R_27499772_SNP [dm6]	T	G	4.388e^-4	0.925	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1602811	3L_1602811_DEL [dm3] 3L_1602811_DEL [dm6]	TAATTCAAT	T	4.392e^-4	0.925	UPSTREAM CG33791 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	15107029	2R_15107029_SNP [dm3] 2R_19219524_SNP [dm6]	T	G	4.393e^-4	0.925	INTRON hppy
X	20397471	X_20397471_SNP [dm3] X_20526444_SNP [dm6]	G	C	4.395e^-4	0.925	INTERGENIC
3R	14917774	3R_14917774_SNP [dm3] 3R_19092052_SNP [dm6]	T	A	4.401e^-4	0.925	INTRON cdi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4545922	3L_4545922_SNP [dm3] 3L_4545922_SNP [dm6]	G	A	4.407e^-4	0.925	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	20259776	2L_20259776_SNP [dm3] 2L_20259776_SNP [dm6]	A	C	4.428e^-4	0.925	INTERGENIC
3L	4545923	3L_4545923_SNP [dm3] 3L_4545923_SNP [dm6]	T	A	4.429e^-4	0.925	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	580702	3L_580702_DEL [dm3] 3L_580702_DEL [dm6]	CC	T	4.430e^-4	0.925	UTR_3_PRIME hipk UPSTREAM Ppm1
2L	10411399	2L_10411399_SNP [dm3] 2L_10411399_SNP [dm6]	T	C	4.432e^-4	0.925	DOWNSTREAM RpS27A INTRON CG5355	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25566123	3R_25566123_SNP [dm3] 3R_29740401_SNP [dm6]	G	C	4.437e^-4	0.925	UTR_5_PRIME CG1969 INTRON CG1969	TF binding site BDTNP1_TFBS_dl
2L	5543996	2L_5543996_SNP [dm3] 2L_5543996_SNP [dm6]	G	A	4.439e^-4	0.925	INTRON Lam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	1717202	3L_1717202_SNP [dm3] 3L_1717202_SNP [dm6]	G	C	4.440e^-4	0.925	SYNONYMOUS_CODING drpr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17693174	2R_17693174_SNP [dm3] 2R_21805669_SNP [dm6]	T	A	4.440e^-4	0.925	INTERGENIC
3L	4664145	3L_4664145_SNP [dm3] 3L_4664145_SNP [dm6]	G	T	4.440e^-4	0.925	SYNONYMOUS_CODING axo
3R	25570904	3R_25570904_SNP [dm3] 3R_29745182_SNP [dm6]	G	C	4.465e^-4	0.925	UPSTREAM IntS11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14051902	3R_14051902_SNP [dm3] 3R_18226180_SNP [dm6]	A	G	4.474e^-4	0.925	UPSTREAM Mdh2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	19079307	3R_19079307_SNP [dm3] 3R_23253585_SNP [dm6]	T	A	4.480e^-4	0.925	INTRON EloA
3L	3547744	3L_3547744_SNP [dm3] 3L_3547744_SNP [dm6]	A	T	4.490e^-4	0.925	INTRON Eip63E
3R	10435085	3R_10435085_SNP [dm3] 3R_14609363_SNP [dm6]	G	T	4.491e^-4	0.925	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	12042290	3R_12042290_SNP [dm3] 3R_16216568_SNP [dm6]	A	G	4.493e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10689171	3L_10689171_SNP [dm3] 3L_10696071_SNP [dm6]	T	A	4.495e^-4	0.925	INTRON NijA
3L	11957361	3L_11957361_SNP [dm3] 3L_11964261_SNP [dm6]	T	G	4.500e^-4	0.925	NON_SYNONYMOUS_CODING prc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1728426	3L_1728426_SNP [dm3] 3L_1728426_SNP [dm6]	A	G	4.505e^-4	0.925	INTRON drpr	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	26327986	3R_26327986_SNP [dm3] 3R_30502264_SNP [dm6]	G	A	4.509e^-4	0.925	SPLICE_SITE_REGION CG31371 INTRON CG31371
2L	3143138	2L_3143138_SNP [dm3] 2L_3143138_SNP [dm6]	C	T	4.516e^-4	0.925	INTRON toc	TF binding site mE1_TFBS_inv
3R	26029150	3R_26029150_DEL [dm3] 3R_30203428_DEL [dm6]	AGTCCAAACACCACATCTAC...	A	4.516e^-4	0.925	UPSTREAM CG9743 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	21443627	3L_21443627_INS [dm3] 3L_21450527_INS [dm6]	T	TATTTT	4.523e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12700702	2R_12700702_SNP [dm3] 2R_16813197_SNP [dm6]	A	T	4.542e^-4	0.925	DOWNSTREAM CR44379 INTERGENIC
3R	27391499	3R_27391499_SNP [dm3] 3R_31565777_SNP [dm6]	G	T	4.544e^-4	0.925	UTR_3_PRIME nyo	TF binding site BDTNP1_TFBS_twi
3L	10373066	3L_10373066_SNP [dm3] 3L_10379966_SNP [dm6]	G	A	4.553e^-4	0.925	INTERGENIC
X	16820787	X_16820787_SNP [dm3] X_16926754_SNP [dm6]	T	A	4.553e^-4	0.925	INTRON CG4928
3R	25577044	3R_25577044_SNP [dm3] 3R_29751322_SNP [dm6]	C	G	4.556e^-4	0.925	SYNONYMOUS_CODING yata	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18363173	2R_18363173_SNP [dm3] 2R_22475668_SNP [dm6]	A	T	4.558e^-4	0.925	SYNONYMOUS_CODING CG45062 DOWNSTREAM CG45063
3R	13570318	3R_13570318_SNP [dm3] 3R_17744596_SNP [dm6]	C	A	4.558e^-4	0.925	INTRON TyrRII	TF binding site mE1_TFBS_cad
3R	27173973	3R_27173973_SNP [dm3] 3R_31348251_SNP [dm6]	C	T	4.559e^-4	0.925	INTRON CG34347	regulatory region REDfly_CRMs
3L	1740467	3L_1740467_SNP [dm3] 3L_1740467_SNP [dm6]	A	C	4.561e^-4	0.925	INTRON Gk
2L	11492755	2L_11492755_SNP [dm3] 2L_11492755_SNP [dm6]	A	G	4.566e^-4	0.925	INTERGENIC
2R	20033431	2R_20033431_SNP [dm3] 2R_24145908_SNP [dm6]	A	G	4.568e^-4	0.925	INTRON Dat
2R	19504706	2R_19504706_SNP [dm3] 2R_23617183_SNP [dm6]	T	G	4.575e^-4	0.925	UPSTREAM CG17664 INTERGENIC	TF binding site mE1_TFBS_sens
X	21905987	X_21905987_SNP [dm3] X_22504151_SNP [dm6]	G	A	4.577e^-4	0.925	DOWNSTREAM l_1_G0196 INTRON l_1_G0196
3L	21144989	3L_21144989_SNP [dm3] 3L_21151889_SNP [dm6]	C	A	4.592e^-4	0.925	INTRON Ac78C
2R	10925555	2R_10925555_SNP [dm3] 2R_15038050_SNP [dm6]	C	G	4.593e^-4	0.925	NON_SYNONYMOUS_CODING hbs
3L	18332318	3L_18332318_SNP [dm3] 3L_18339218_SNP [dm6]	C	T	4.596e^-4	0.925	INTERGENIC	TF binding site mE1_TFBS_cad
3R	15166937	3R_15166937_SNP [dm3] 3R_19341215_SNP [dm6]	G	C	4.597e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14245152	3R_14245152_SNP [dm3] 3R_18419430_SNP [dm6]	G	A	4.603e^-4	0.925	UTR_3_PRIME fru INTRON fru
X	20525439	X_20525439_SNP [dm3] X_20654412_SNP [dm6]	C	A	4.604e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15943381	3L_15943381_SNP [dm3] 3L_15950281_SNP [dm6]	G	C	4.619e^-4	0.925	INTRON Pka-C3
3L	8172055	3L_8172055_SNP [dm3] 3L_8178955_SNP [dm6]	T	G	4.634e^-4	0.925	SYNONYMOUS_CODING mthl7 UPSTREAM Nmt
X	16139052	X_16139052_SNP [dm3] X_16245019_SNP [dm6]	T	A	4.636e^-4	0.925	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	25562933	3R_25562933_SNP [dm3] 3R_29737211_SNP [dm6]	C	A	4.650e^-4	0.925	SYNONYMOUS_CODING CG7598 UPSTREAM CG7601	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Ubx
2L	13753330	2L_13753330_SNP [dm3] 2L_13753330_SNP [dm6]	A	G	4.650e^-4	0.925	INTRON CR44846 & 1 other
3L	3186876	3L_3186876_SNP [dm3] 3L_3186876_SNP [dm6]	C	T	4.651e^-4	0.925	SYNONYMOUS_CODING CG32284 UPSTREAM CG14957 DOWNSTREAM CG42494
2R	17594868	2R_17594868_SNP [dm3] 2R_21707363_SNP [dm6]	A	G	4.657e^-4	0.925	INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11302968	3R_11302968_SNP [dm3] 3R_15477246_SNP [dm6]	C	T	4.664e^-4	0.925	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	3529236	2L_3529236_SNP [dm3] 2L_3529236_SNP [dm6]	A	G	4.669e^-4	0.925	INTRON Spindly
2L	1458905	2L_1458905_SNP [dm3] 2L_1458905_SNP [dm6]	T	C	4.675e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	4639834	X_4639834_SNP [dm3] X_4745801_SNP [dm6]	C	T	4.676e^-4	0.925	INTERGENIC
3L	10247208	3L_10247208_SNP [dm3] 3L_10254108_SNP [dm6]	G	A	4.679e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	22073945	3R_22073945_SNP [dm3] 3R_26248223_SNP [dm6]	G	A	4.682e^-4	0.925	INTRON CR42745	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	12024821	X_12024821_SNP [dm3] X_12130788_SNP [dm6]	C	T	4.693e^-4	0.925	INTRON Ten-a
3R	13272898	3R_13272898_SNP [dm3] 3R_17447176_SNP [dm6]	A	G	4.696e^-4	0.925	DOWNSTREAM CG5873 INTRON Eh
2L	7387671	2L_7387671_SNP [dm3] 2L_7387671_SNP [dm6]	C	G	4.700e^-4	0.925	UPSTREAM gudu INTRON CG5149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	12366786	3L_12366786_SNP [dm3] 3L_12373686_SNP [dm6]	A	G	4.708e^-4	0.925	SYNONYMOUS_CODING Ncc69	TF binding site mE1_TFBS_cad
X	14044785	X_14044785_SNP [dm3] X_14150752_SNP [dm6]	A	T	4.710e^-4	0.925	DOWNSTREAM CG12479 INTERGENIC
3L	11922598	3L_11922598_INS [dm3] 3L_11929498_INS [dm6]	G	GAG	4.711e^-4	0.925	INTRON CG44837 & 1 other
X	21946743	X_21946743_SNP [dm3] X_22544907_SNP [dm6]	C	A	4.714e^-4	0.925	UPSTREAM CG17599 INTERGENIC
X	6497635	X_6497635_SNP [dm3] X_6603602_SNP [dm6]	G	A	4.714e^-4	0.925	INTRON pigs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	1421476	2L_1421476_SNP [dm3] 2L_1421476_SNP [dm6]	T	A	4.714e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25907821	3R_25907821_SNP [dm3] 3R_30082099_SNP [dm6]	A	T	4.714e^-4	0.925	INTRON sima
2R	4592576	2R_4592576_SNP [dm3] 2R_8705071_SNP [dm6]	C	T	4.723e^-4	0.925	DOWNSTREAM CG12376 INTERGENIC
2L	19923610	2L_19923610_INS [dm3] 2L_19923610_INS [dm6]	C	CCAGC	4.725e^-4	0.925	DOWNSTREAM CR43827 INTRON sick
3R	17741926	3R_17741926_SNP [dm3] 3R_21916204_SNP [dm6]	T	C	4.734e^-4	0.925	DOWNSTREAM CG17843 INTERGENIC
3L	6100265	3L_6100265_SNP [dm3] 3L_6107165_SNP [dm6]	C	T	4.747e^-4	0.925	INTRON Ets65A	TF binding site mE1_TFBS_cad
2L	8930677	2L_8930677_INS [dm3] 2L_8930677_INS [dm6]	T	TGACCAATTACTTTAATTTT...	4.748e^-4	0.925	INTRON CG34398	TF binding site mE1_TFBS_HSA
2R	12227395	2R_12227395_SNP [dm3] 2R_16339890_SNP [dm6]	T	G	4.749e^-4	0.925	SYNONYMOUS_CODING Hmgs	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18206382	3R_18206382_SNP [dm3] 3R_22380660_SNP [dm6]	C	T	4.750e^-4	0.925	NON_SYNONYMOUS_CODING CG34149 UPSTREAM CG43342 DOWNSTREAM CG18596	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	26268525	3R_26268525_SNP [dm3] 3R_30442803_SNP [dm6]	G	C	4.753e^-4	0.925	INTRON CG15537
3R	8929715	3R_8929715_DEL [dm3] 3R_13103993_DEL [dm6]	GC	G	4.758e^-4	0.925	INTRON timeout
3L	2388326	3L_2388326_INS [dm3] 3L_2388326_INS [dm6]	A	AA	4.771e^-4	0.925	UTR_5_PRIME CG45186 UPSTREAM CG42787 INTRON CG45186	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	3755318	2L_3755318_SNP [dm3] 2L_3755318_SNP [dm6]	G	A	4.774e^-4	0.925	DOWNSTREAM CG10019 INTERGENIC
3L	1988796	3L_1988796_SNP [dm3] 3L_1988796_SNP [dm6]	T	C	4.775e^-4	0.925	INTERGENIC	TF binding site mE1_TFBS_inv
2L	8401796	2L_8401796_SNP [dm3] 2L_8401796_SNP [dm6]	A	T	4.776e^-4	0.925	DOWNSTREAM CG31898 INTRON fy
2R	19696085	2R_19696085_SNP [dm3] 2R_23808562_SNP [dm6]	G	C	4.784e^-4	0.925	SYNONYMOUS_CODING Ssrp UPSTREAM CG5543	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9810813	3R_9810813_SNP [dm3] 3R_13985091_SNP [dm6]	T	A	4.800e^-4	0.925	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4425907	3L_4425907_SNP [dm3] 3L_4425907_SNP [dm6]	A	T	4.801e^-4	0.925	INTRON CG15020
3R	9875491	3R_9875491_SNP [dm3] 3R_14049769_SNP [dm6]	A	T	4.804e^-4	0.925	INTERGENIC
3R	25563726	3R_25563726_SNP [dm3] 3R_29738004_SNP [dm6]	T	A	4.804e^-4	0.925	UTR_3_PRIME CG7598 UPSTREAM CG1969	TF binding site BDTNP1_TFBS_dl
3R	11743244	3R_11743244_SNP [dm3] 3R_15917522_SNP [dm6]	C	T	4.806e^-4	0.925	UPSTREAM CG45105 INTRON CG45105
2R	16919550	2R_16919550_SNP [dm3] 2R_21032045_SNP [dm6]	A	G	4.810e^-4	0.925	INTERGENIC
2L	1834297	2L_1834297_SNP [dm3] 2L_1834297_SNP [dm6]	A	G	4.820e^-4	0.925	INTERGENIC
X	18992590	X_18992590_SNP [dm3] X_19098557_SNP [dm6]	C	T	4.823e^-4	0.925	INTERGENIC
2L	9644956	2L_9644956_SNP [dm3] 2L_9644956_SNP [dm6]	T	C	4.828e^-4	0.925	SYNONYMOUS_CODING Apoltp
X	12699254	X_12699254_SNP [dm3] X_12805221_SNP [dm6]	G	T	4.830e^-4	0.925	DOWNSTREAM CG3775 INTRON Pde9
3L	6816874	3L_6816874_SNP [dm3] 3L_6823774_SNP [dm6]	A	T	4.832e^-4	0.925	INTERGENIC
3L	16436444	3L_16436444_SNP [dm3] 3L_16443344_SNP [dm6]	G	A	4.833e^-4	0.925	INTRON CG33158 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25540505	3R_25540505_SNP [dm3] 3R_29714783_SNP [dm6]	G	C	4.838e^-4	0.925	NON_SYNONYMOUS_CODING Obp99d DOWNSTREAM Dup99B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	4491418	2R_4491418_SNP [dm3] 2R_8603913_SNP [dm6]	C	T	4.839e^-4	0.925	INTRON rgr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7409318	3L_7409318_SNP [dm3] 3L_7416218_SNP [dm6]	A	T	4.844e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	20268667	2L_20268667_SNP [dm3] 2L_20268667_SNP [dm6]	A	G	4.856e^-4	0.925	INTERGENIC
2L	19143020	2L_19143020_SNP [dm3] 2L_19143020_SNP [dm6]	G	T	4.860e^-4	0.925	INTRON brat	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13860431	3L_13860431_SNP [dm3] 3L_13867331_SNP [dm6]	T	C	4.862e^-4	0.925	UPSTREAM CG8745 DOWNSTREAM dysc INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9644740	2L_9644740_SNP [dm3] 2L_9644740_SNP [dm6]	T	C	4.864e^-4	0.925	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	4732946	3L_4732946_SNP [dm3] 3L_4732946_SNP [dm6]	T	C	4.873e^-4	0.925	INTRON RhoGEF64C
3L	2054761	3L_2054761_SNP [dm3] 3L_2054761_SNP [dm6]	C	T	4.874e^-4	0.925	NON_SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_sens
X	14044781	X_14044781_SNP [dm3] X_14150748_SNP [dm6]	C	A	4.876e^-4	0.925	DOWNSTREAM CG12479 INTERGENIC
3L	12026050	3L_12026050_SNP [dm3] 3L_12032950_SNP [dm6]	T	C	4.881e^-4	0.925	UTR_3_PRIME CG43993 INTRON rols
2L	20268348	2L_20268348_SNP [dm3] 2L_20268348_SNP [dm6]	G	A	4.885e^-4	0.925	INTERGENIC
3R	25570980	3R_25570980_SNP [dm3] 3R_29745258_SNP [dm6]	T	A	4.904e^-4	0.925	UPSTREAM IntS11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	9644446	2L_9644446_SNP [dm3] 2L_9644446_SNP [dm6]	A	G	4.911e^-4	0.925	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_cad
2L	9644449	2L_9644449_SNP [dm3] 2L_9644449_SNP [dm6]	A	G	4.911e^-4	0.925	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_cad
X	8697140	X_8697140_SNP [dm3] X_8803107_SNP [dm6]	T	C	4.913e^-4	0.925	INTRON Lim1
X	6498232	X_6498232_SNP [dm3] X_6604199_SNP [dm6]	C	A	4.915e^-4	0.925	INTRON pigs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7948778	3L_7948778_SNP [dm3] 3L_7955678_SNP [dm6]	G	A	4.916e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1730245	3L_1730245_SNP [dm3] 3L_1730245_SNP [dm6]	A	G	4.925e^-4	0.925	DOWNSTREAM Oseg4 INTRON drpr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	9778558	X_9778558_SNP [dm3] X_9884525_SNP [dm6]	T	A	4.929e^-4	0.925	SYNONYMOUS_CODING CG9691 DOWNSTREAM CG9689
3L	8903500	3L_8903500_SNP [dm3] 3L_8910400_SNP [dm6]	G	A	4.935e^-4	0.925	SYNONYMOUS_CODING mfr UTR_5_PRIME mfr
3R	10734728	3R_10734728_SNP [dm3] 3R_14909006_SNP [dm6]	T	C	4.938e^-4	0.925	INTERGENIC
3L	1734469	3L_1734469_SNP [dm3] 3L_1734469_SNP [dm6]	G	A	4.950e^-4	0.925	INTRON Oseg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3550248	2L_3550248_SNP [dm3] 2L_3550248_SNP [dm6]	G	T	4.952e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3213071	2L_3213071_SNP [dm3] 2L_3213071_SNP [dm6]	T	A	4.956e^-4	0.925	INTERGENIC
3R	11248762	3R_11248762_SNP [dm3] 3R_15423040_SNP [dm6]	T	C	4.971e^-4	0.925	SYNONYMOUS_CODING CG6118	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	9854966	X_9854966_SNP [dm3] X_9960933_SNP [dm6]	C	T	4.974e^-4	0.925	INTERGENIC
2R	16880173	2R_16880173_SNP [dm3] 2R_20992668_SNP [dm6]	A	G	4.977e^-4	0.925	SYNONYMOUS_CODING dgt3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	17399852	X_17399852_INS [dm3] X_17505819_INS [dm6]	A	AG	4.980e^-4	0.925	INTRON CG43658	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2R	12577953	2R_12577953_SNP [dm3] 2R_16690448_SNP [dm6]	G	A	4.981e^-4	0.925	UPSTREAM CG5210 INTRON CG30463
2L	5968475	2L_5968475_SNP [dm3] 2L_5968475_SNP [dm6]	T	G	4.982e^-4	0.925	UPSTREAM Ucp4C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25729465	3R_25729465_SNP [dm3] 3R_29903743_SNP [dm6]	T	G	4.987e^-4	0.925	NON_SYNONYMOUS_CODING CG15517 DOWNSTREAM CG31038	TF binding site mE1_TFBS_bab1
2L	19728173	2L_19728173_SNP [dm3] 2L_19728173_SNP [dm6]	C	A	5.005e^-4	0.925	SYNONYMOUS_CODING Lar	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19217624	3R_19217624_SNP [dm3] 3R_23391902_SNP [dm6]	G	A	5.014e^-4	0.925	INTERGENIC
2R	11718258	2R_11718258_SNP [dm3] 2R_15830753_SNP [dm6]	G	T	5.021e^-4	0.925	INTRON tun & 1 other	regulatory region REDfly_CRMs
3R	15266986	3R_15266986_SNP [dm3] 3R_19441264_SNP [dm6]	G	C	5.022e^-4	0.925	INTRON CG31221
2L	4292804	2L_4292804_INS [dm3] 2L_4292804_INS [dm6]	A	AA	5.031e^-4	0.925	INTRON tutl
3L	15541522	3L_15541522_SNP [dm3] 3L_15548422_SNP [dm6]	C	A	5.037e^-4	0.925	INTRON CrebA	TF binding site BDTNP1_TFBS_hb
2L	20261162	2L_20261162_SNP [dm3] 2L_20261162_SNP [dm6]	C	T	5.043e^-4	0.925	INTERGENIC
2L	8575887	2L_8575887_SNP [dm3] 2L_8575887_SNP [dm6]	T	A	5.045e^-4	0.925	INTRON Sema-1a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9644968	2L_9644968_SNP [dm3] 2L_9644968_SNP [dm6]	A	G	5.045e^-4	0.925	SYNONYMOUS_CODING Apoltp
3L	3340383	3L_3340383_SNP [dm3] 3L_3340383_SNP [dm6]	T	C	5.055e^-4	0.925	INTRON kst
3R	9976651	3R_9976651_DEL [dm3] 3R_14150929_DEL [dm6]	AA	A	5.058e^-4	0.925	INTRON CG14355
2R	19710398	2R_19710398_SNP [dm3] 2R_23822875_SNP [dm6]	T	A	5.062e^-4	0.925	DOWNSTREAM CG4763 INTRON CG5549
3L	15943338	3L_15943338_SNP [dm3] 3L_15950238_SNP [dm6]	T	C	5.063e^-4	0.925	INTRON Pka-C3
2L	10517238	2L_10517238_SNP [dm3] 2L_10517238_SNP [dm6]	G	T	5.071e^-4	0.925	UPSTREAM Lrr47 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	27130631	3R_27130631_SNP [dm3] 3R_31304909_SNP [dm6]	G	C	5.075e^-4	0.925	INTRON CG11340	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	20506181	3R_20506181_SNP [dm3] 3R_24680459_SNP [dm6]	G	A	5.076e^-4	0.925	INTRON slo
3L	1734436	3L_1734436_SNP [dm3] 3L_1734436_SNP [dm6]	A	G	5.078e^-4	0.925	SPLICE_SITE_REGION Oseg4 INTRON Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24060908	3R_24060908_SNP [dm3] 3R_28235186_SNP [dm6]	C	T	5.082e^-4	0.925	INTRON CG34354
2L	10797823	2L_10797823_SNP [dm3] 2L_10797823_SNP [dm6]	A	G	5.103e^-4	0.925	INTRON CG31869
2L	10252475	2L_10252475_SNP [dm3] 2L_10252475_SNP [dm6]	T	C	5.104e^-4	0.925	DOWNSTREAM CG31717 INTRON Ror
X	14188935	X_14188935_SNP [dm3] X_14294902_SNP [dm6]	C	G	5.107e^-4	0.925	DOWNSTREAM CR44963 INTERGENIC
X	14441310	X_14441310_SNP [dm3] X_14547277_SNP [dm6]	T	C	5.110e^-4	0.925	INTERGENIC
X	6405043	X_6405043_SNP [dm3] X_6511010_SNP [dm6]	C	T	5.111e^-4	0.925	INTRON CG42340	TF binding site mE1_TFBS_inv
2L	20147832	2L_20147832_SNP [dm3] 2L_20147832_SNP [dm6]	C	T	5.117e^-4	0.925	INTERGENIC
X	11728582	X_11728582_SNP [dm3] X_11834549_SNP [dm6]	C	G	5.123e^-4	0.925	DOWNSTREAM rudhira INTRON rudhira
2L	9633126	2L_9633126_SNP [dm3] 2L_9633126_SNP [dm6]	T	C	5.130e^-4	0.925	INTERGENIC
3R	25337004	3R_25337004_SNP [dm3] 3R_29511282_SNP [dm6]	G	T	5.130e^-4	0.925	INTERGENIC
3L	3130183	3L_3130183_SNP [dm3] 3L_3130183_SNP [dm6]	G	A	5.136e^-4	0.925	SPLICE_SITE_REGION CG11537 INTRON CG11537
3R	5971487	3R_5971487_SNP [dm3] 3R_10145765_SNP [dm6]	T	G	5.137e^-4	0.925	INTRON Invadolysin	TF binding site BDTNP1_TFBS_dl
2L	11492746	2L_11492746_SNP [dm3] 2L_11492746_SNP [dm6]	G	A	5.142e^-4	0.925	INTERGENIC
3L	14376123	3L_14376123_SNP [dm3] 3L_14383023_SNP [dm6]	T	G	5.144e^-4	0.925	UTR_3_PRIME CG43120
X	8054013	X_8054013_SNP [dm3] X_8159980_SNP [dm6]	C	A	5.145e^-4	0.925	UPSTREAM CG15337 DOWNSTREAM GIIIspla2 INTERGENIC
2R	10925628	2R_10925628_SNP [dm3] 2R_15038123_SNP [dm6]	C	T	5.157e^-4	0.925	INTRON hbs
3R	25540241	3R_25540241_SNP [dm3] 3R_29714519_SNP [dm6]	A	T	5.157e^-4	0.925	UTR_5_PRIME Obp99d UPSTREAM CR45569 DOWNSTREAM Dup99B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	5544791	2L_5544791_SNP [dm3] 2L_5544791_SNP [dm6]	T	G	5.166e^-4	0.925	INTRON Lam	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	11953081	2L_11953081_SNP [dm3] 2L_11953081_SNP [dm6]	C	T	5.171e^-4	0.925	DOWNSTREAM bft EXON CR43314
X	2852395	X_2852395_SNP [dm3] X_2958362_SNP [dm6]	G	T	5.171e^-4	0.925	INTRON kirre & 1 other
2L	1458870	2L_1458870_DEL [dm3] 2L_1458870_DEL [dm6]	CTAC	C	5.173e^-4	0.925	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	1733100	3L_1733100_SNP [dm3] 3L_1733100_SNP [dm6]	G	A	5.178e^-4	0.925	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17499192	2R_17499192_SNP [dm3] 2R_21611687_SNP [dm6]	A	C	5.178e^-4	0.925	INTRON CG15673
3L	5144461	3L_5144461_SNP [dm3] 3L_5151361_SNP [dm6]	A	C	5.179e^-4	0.925	INTRON Gen	TF binding site mE1_TFBS_HSA
X	6649522	X_6649522_SNP [dm3] X_6755489_SNP [dm6]	T	A	5.182e^-4	0.925	UTR_3_PRIME CG14439 UPSTREAM CG14438
X	6649524	X_6649524_SNP [dm3] X_6755491_SNP [dm6]	A	G	5.182e^-4	0.925	UTR_3_PRIME CG14439 UPSTREAM CG14438

By genomic position
Variant impact
Gene name

Wing_PCV_Length phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results