DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.617e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.08831

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2250 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	3638900	2L_3638900_DEL [dm3] 2L_3638900_DEL [dm6]	AATAA	A	9.989e^-7	0.428	INTRON for	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3910709	3L_3910709_SNP [dm3] 3L_3910709_SNP [dm6]	G	T	1.340e^-6	0.428	UTR_3_PRIME Eip63F-1 UPSTREAM mge DOWNSTREAM Eip63F-1
X	12929494	X_12929494_SNP [dm3] X_13035461_SNP [dm6]	A	G	1.582e^-6	0.428	INTRON rad
X	12929532	X_12929532_SNP [dm3] X_13035499_SNP [dm6]	G	A	1.670e^-6	0.428	INTRON rad
X	9459739	X_9459739_SNP [dm3] X_9565706_SNP [dm6]	C	A	1.680e^-6	0.428	SYNONYMOUS_CODING Cubn
X	12929483	X_12929483_SNP [dm3] X_13035450_SNP [dm6]	C	A	1.788e^-6	0.428	INTRON rad
2L	3154459	2L_3154459_SNP [dm3] 2L_3154459_SNP [dm6]	A	T	1.823e^-6	0.428	INTRON Mad
2R	14991552	2R_14991552_SNP [dm3] 2R_19104047_SNP [dm6]	T	C	1.828e^-6	0.428	INTRON 5-HT1A
X	12929562	X_12929562_SNP [dm3] X_13035529_SNP [dm6]	T	A	2.921e^-6	0.515	INTRON rad
3L	16570715	3L_16570715_SNP [dm3] 3L_16577615_SNP [dm6]	C	G	3.049e^-6	0.515	NON_SYNONYMOUS_CODING nxf2 DOWNSTREAM mbf1	transposable element FlyBase
3L	16570632	3L_16570632_SNP [dm3] 3L_16577532_SNP [dm6]	T	C	3.156e^-6	0.515	NON_SYNONYMOUS_CODING nxf2 DOWNSTREAM mbf1	transposable element FlyBase
3R	20551315	3R_20551315_DEL [dm3] 3R_24725593_DEL [dm6]	CA	C	3.295e^-6	0.515	INTRON tok	TF binding site BDTNP1_TFBS_dl
X	12929518	X_12929518_INS [dm3] X_13035485_INS [dm6]	T	TT	3.700e^-6	0.534	INTRON rad
X	5251346	X_5251346_SNP [dm3] X_5357313_SNP [dm6]	G	A	6.405e^-6	0.814	UPSTREAM SK INTRON SK
2L	939164	2L_939164_SNP [dm3] 2L_939164_SNP [dm6]	T	C	6.512e^-6	0.814	INTRON CG4341	TF binding site mE1_TFBS_chinmo
2L	17255468	2L_17255468_SNP [dm3] 2L_17255468_SNP [dm6]	G	T	7.054e^-6	0.818	INTRON beat-IIIc
2L	12249089	2L_12249089_SNP [dm3] 2L_12249089_SNP [dm6]	A	C	8.683e^-6	0.818	INTRON aret
2R	9328321	2R_9328321_SNP [dm3] 2R_13440816_SNP [dm6]	T	C	8.916e^-6	0.818	SYNONYMOUS_CODING cnn	TF binding site mE1_TFBS_cad
2L	7646262	2L_7646262_SNP [dm3] 2L_7646262_SNP [dm6]	T	A	9.092e^-6	0.818	DOWNSTREAM Slob INTRON Slob
3L	16576258	3L_16576258_SNP [dm3] 3L_16583158_SNP [dm6]	C	A	1.141e^-5	0.818	NON_SYNONYMOUS_CODING Rpn12 UPSTREAM CG4169 DOWNSTREAM CR43727	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	7477102	3L_7477102_SNP [dm3] 3L_7484002_SNP [dm6]	G	C	1.185e^-5	0.818	INTERGENIC
3L	1720452	3L_1720452_SNP [dm3] 3L_1720452_SNP [dm6]	T	C	1.270e^-5	0.818	DOWNSTREAM CG18171 INTRON drpr
3R	24094969	3R_24094969_SNP [dm3] 3R_28269247_SNP [dm6]	A	C	1.278e^-5	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	9459779	X_9459779_SNP [dm3] X_9565746_SNP [dm6]	G	T	1.306e^-5	0.818	SPLICE_SITE_REGION Cubn INTRON Cubn
2L	2389910	2L_2389910_SNP [dm3] 2L_2389910_SNP [dm6]	A	G	1.325e^-5	0.818	SYNONYMOUS_CODING CG43750
2R	14648346	2R_14648346_SNP [dm3] 2R_18760841_SNP [dm6]	G	A	1.328e^-5	0.818	UPSTREAM Jabba & 1 other INTRON Jabba
X	6451744	X_6451744_SNP [dm3] X_6557711_SNP [dm6]	C	A	1.455e^-5	0.818	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
2R	12457959	2R_12457959_SNP [dm3] 2R_16570454_SNP [dm6]	T	C	1.481e^-5	0.818	DOWNSTREAM CG4945 INTRON RpS15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	22419832	3L_22419832_SNP [dm3] 3L_22426732_SNP [dm6]	A	G	1.496e^-5	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	14728302	3R_14728302_SNP [dm3] 3R_18902580_SNP [dm6]	A	T	1.593e^-5	0.818	SYNONYMOUS_CODING CG34284 UPSTREAM CG14294
X	6877763	X_6877763_SNP [dm3] X_6983730_SNP [dm6]	G	C	1.701e^-5	0.818	START_GAINED ogre UTR_5_PRIME ogre UPSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	16710047	X_16710047_SNP [dm3] X_16816014_SNP [dm6]	C	T	1.709e^-5	0.818	UPSTREAM CG4829 & 1 other INTRON CG4829
2L	7707923	2L_7707923_SNP [dm3] 2L_7707923_SNP [dm6]	A	G	1.727e^-5	0.818	SYNONYMOUS_CODING Tep3 DOWNSTREAM CR44990
3L	1086740	3L_1086740_SNP [dm3] 3L_1086740_SNP [dm6]	G	A	1.820e^-5	0.818	INTRON bab1
3L	1344895	3L_1344895_SNP [dm3] 3L_1344895_SNP [dm6]	G	A	1.863e^-5	0.818	SYNONYMOUS_CODING Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	11849740	2L_11849740_SNP [dm3] 2L_11849740_SNP [dm6]	A	G	1.868e^-5	0.818	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
2R	16863939	2R_16863939_SNP [dm3] 2R_20976434_SNP [dm6]	T	A	1.903e^-5	0.818	UPSTREAM CG9344 INTRON CG34115	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2076368	2L_2076368_SNP [dm3] 2L_2076368_SNP [dm6]	T	A	1.911e^-5	0.818	INTRON dpr3
3L	11621381	3L_11621381_SNP [dm3] 3L_11628281_SNP [dm6]	G	T	1.952e^-5	0.818	DOWNSTREAM PCID2 INTRON CG18815	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	1912355	3L_1912355_SNP [dm3] 3L_1912355_SNP [dm6]	A	C	1.991e^-5	0.818	INTERGENIC
2L	14009777	2L_14009777_SNP [dm3] 2L_14009777_SNP [dm6]	A	T	2.018e^-5	0.818	DOWNSTREAM CG42692 & 1 other INTERGENIC
2L	7646289	2L_7646289_SNP [dm3] 2L_7646289_SNP [dm6]	G	T	2.042e^-5	0.818	DOWNSTREAM Slob INTRON Slob
3R	14728278	3R_14728278_SNP [dm3] 3R_18902556_SNP [dm6]	G	C	2.071e^-5	0.818	SYNONYMOUS_CODING CG34284 UPSTREAM CG14294
3L	14320848	3L_14320848_SNP [dm3] 3L_14327748_SNP [dm6]	C	T	2.111e^-5	0.818	INTRON fz
3L	978878	3L_978878_SNP [dm3] 3L_978878_SNP [dm6]	T	C	2.228e^-5	0.818	INTRON Glut1
3L	18626712	3L_18626712_SNP [dm3] 3L_18633612_SNP [dm6]	G	A	2.279e^-5	0.818	INTRON MYPT-75D
3L	18626744	3L_18626744_SNP [dm3] 3L_18633644_SNP [dm6]	G	T	2.282e^-5	0.818	INTRON MYPT-75D
2L	11849737	2L_11849737_SNP [dm3] 2L_11849737_SNP [dm6]	G	A	2.432e^-5	0.818	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
2L	4136103	2L_4136103_SNP [dm3] 2L_4136103_SNP [dm6]	T	G	2.464e^-5	0.818	INTERGENIC
2R	14648374	2R_14648374_SNP [dm3] 2R_18760869_SNP [dm6]	C	T	2.480e^-5	0.818	UTR_5_PRIME Jabba UPSTREAM Jabba & 1 other
2L	14009843	2L_14009843_SNP [dm3] 2L_14009843_SNP [dm6]	T	C	2.650e^-5	0.818	DOWNSTREAM tRNA:Q:34E INTERGENIC
2R	19897692	2R_19897692_SNP [dm3] 2R_24010169_SNP [dm6]	G	A	2.718e^-5	0.818	SYNONYMOUS_CODING Unc-89 INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13982428	3L_13982428_SNP [dm3] 3L_13989328_SNP [dm6]	G	T	2.737e^-5	0.818	DOWNSTREAM CG9040 INTRON CG17364
2L	11352014	2L_11352014_SNP [dm3] 2L_11352014_SNP [dm6]	G	C	2.740e^-5	0.818	INTERGENIC	regulatory region REDfly_CRMs
3R	27383165	3R_27383165_SNP [dm3] 3R_31557443_SNP [dm6]	A	G	2.886e^-5	0.818	INTRON nyo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4338778	3R_4338778_SNP [dm3] 3R_8513056_SNP [dm6]	T	C	2.892e^-5	0.818	UPSTREAM Or85c INTERGENIC
3L	2998145	3L_2998145_SNP [dm3] 3L_2998145_SNP [dm6]	T	C	2.933e^-5	0.818	INTERGENIC
X	5251324	X_5251324_DEL [dm3] X_5357291_DEL [dm6]	TAT	T	2.973e^-5	0.818	UPSTREAM SK INTRON SK
2L	11820732	2L_11820732_SNP [dm3] 2L_11820732_SNP [dm6]	G	A	3.009e^-5	0.818	INTRON Pde1c
X	6448608	X_6448608_SNP [dm3] X_6554575_SNP [dm6]	C	T	3.014e^-5	0.818	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_chinmo
2L	14689608	2L_14689608_SNP [dm3] 2L_14689608_SNP [dm6]	A	G	3.029e^-5	0.818	UPSTREAM osp INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	18253604	X_18253604_SNP [dm3] X_18359571_SNP [dm6]	C	T	3.038e^-5	0.818	INTRON CG6106
2L	8370098	2L_8370098_SNP [dm3] 2L_8370098_SNP [dm6]	A	T	3.039e^-5	0.818	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
3L	9132397	3L_9132397_SNP [dm3] 3L_9139297_SNP [dm6]	T	C	3.096e^-5	0.818	SYNONYMOUS_CODING nwk	TF binding site mE1_TFBS_sens
2L	16165586	2L_16165586_SNP [dm3] 2L_16165586_SNP [dm6]	G	T	3.144e^-5	0.818	UPSTREAM Ca-alpha1D INTERGENIC
3R	4338756	3R_4338756_SNP [dm3] 3R_8513034_SNP [dm6]	A	G	3.203e^-5	0.818	UPSTREAM Or85c INTERGENIC
2R	4887439	2R_4887439_SNP [dm3] 2R_8999934_SNP [dm6]	C	T	3.285e^-5	0.818	INTRON Np
X	18253510	X_18253510_SNP [dm3] X_18359477_SNP [dm6]	C	T	3.344e^-5	0.818	SYNONYMOUS_CODING CG6106
X	5251321	X_5251321_SNP [dm3] X_5357288_SNP [dm6]	A	T	3.348e^-5	0.818	UPSTREAM SK INTRON SK
X	4461691	X_4461691_SNP [dm3] X_4567658_SNP [dm6]	G	A	3.348e^-5	0.818	INTRON CR32773
2L	4178443	2L_4178443_SNP [dm3] 2L_4178443_SNP [dm6]	G	A	3.554e^-5	0.818	INTERGENIC
3R	10668779	3R_10668779_SNP [dm3] 3R_14843057_SNP [dm6]	T	C	3.705e^-5	0.818	INTRON btsz
2R	16863923	2R_16863923_SNP [dm3] 2R_20976418_SNP [dm6]	C	G	3.722e^-5	0.818	UPSTREAM CG9344 INTRON CG34115	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	12929574	X_12929574_SNP [dm3] X_13035541_SNP [dm6]	A	G	3.723e^-5	0.818	INTRON rad
X	12929584	X_12929584_SNP [dm3] X_13035551_SNP [dm6]	C	G	3.723e^-5	0.818	INTRON rad
2L	15912630	2L_15912630_SNP [dm3] 2L_15912630_SNP [dm6]	A	T	3.829e^-5	0.818	DOWNSTREAM CR44867 INTRON beat-Ib EXON CR44868	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	14376827	2L_14376827_SNP [dm3] 2L_14376827_SNP [dm6]	C	A	3.869e^-5	0.818	INTERGENIC
X	17567743	X_17567743_SNP [dm3] X_17673710_SNP [dm6]	A	G	3.872e^-5	0.818	SYNONYMOUS_CODING chas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18968786	X_18968786_SNP [dm3] X_19074753_SNP [dm6]	C	G	3.931e^-5	0.818	INTERGENIC
3L	11662552	3L_11662552_SNP [dm3] 3L_11669452_SNP [dm6]	C	T	3.992e^-5	0.818	INTRON CG32085
X	9459793	X_9459793_INS [dm3] X_9565760_INS [dm6]	G	GTGCACA	4.013e^-5	0.818	INTRON Cubn
3L	11662566	3L_11662566_SNP [dm3] 3L_11669466_SNP [dm6]	C	T	4.122e^-5	0.818	INTRON CG32085
3L	16693889	3L_16693889_SNP [dm3] 3L_16700789_SNP [dm6]	C	T	4.123e^-5	0.818	INTRON Lasp & 1 other
2L	4140925	2L_4140925_SNP [dm3] 2L_4140925_SNP [dm6]	T	G	4.272e^-5	0.818	INTERGENIC
2L	4147037	2L_4147037_SNP [dm3] 2L_4147037_SNP [dm6]	A	T	4.274e^-5	0.818	INTERGENIC
X	9459783	X_9459783_SNP [dm3] X_9565750_SNP [dm6]	G	A	4.303e^-5	0.818	INTRON Cubn
3R	16345013	3R_16345013_SNP [dm3] 3R_20519291_SNP [dm6]	G	A	4.445e^-5	0.818	INTERGENIC
X	4735299	X_4735299_DEL [dm3] X_4841266_DEL [dm6]	ATCGAA	A	4.470e^-5	0.818	UTR_5_PRIME CG42594	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11662518	3L_11662518_SNP [dm3] 3L_11669418_SNP [dm6]	C	T	4.474e^-5	0.818	INTRON CG32085
X	5251231	X_5251231_SNP [dm3] X_5357198_SNP [dm6]	G	A	4.527e^-5	0.818	INTRON SK
X	4234161	X_4234161_SNP [dm3] X_4340128_SNP [dm6]	T	A	4.559e^-5	0.818	INTRON norpA
3L	11662555	3L_11662555_SNP [dm3] 3L_11669455_SNP [dm6]	G	A	4.595e^-5	0.818	INTRON CG32085
3R	17057951	3R_17057951_SNP [dm3] 3R_21232229_SNP [dm6]	A	G	4.660e^-5	0.818	SYNONYMOUS_CODING e	TF binding site mE1_TFBS_cad
3L	11662509	3L_11662509_SNP [dm3] 3L_11669409_SNP [dm6]	A	G	4.710e^-5	0.818	INTRON CG32085
2R	13214739	2R_13214739_SNP [dm3] 2R_17327234_SNP [dm6]	C	G	4.717e^-5	0.818	INTRON mbl
3L	8730240	3L_8730240_SNP [dm3] 3L_8737140_SNP [dm6]	C	T	4.757e^-5	0.818	SYNONYMOUS_CODING Prm INTRON Prm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2L	7646312	2L_7646312_SNP [dm3] 2L_7646312_SNP [dm6]	A	C	4.836e^-5	0.818	DOWNSTREAM Slob INTRON Slob
3R	4338745	3R_4338745_SNP [dm3] 3R_8513023_SNP [dm6]	T	A	4.845e^-5	0.818	UPSTREAM Or85c INTERGENIC
X	18329630	X_18329630_SNP [dm3] X_18435597_SNP [dm6]	C	T	4.875e^-5	0.818	DOWNSTREAM CG32548 INTERGENIC
3L	5884764	3L_5884764_SNP [dm3] 3L_5891664_SNP [dm6]	C	T	4.894e^-5	0.818	INTERGENIC
3L	18645419	3L_18645419_SNP [dm3] 3L_18652319_SNP [dm6]	T	G	4.920e^-5	0.818	INTRON MYPT-75D
3L	6546745	3L_6546745_SNP [dm3] 3L_6553645_SNP [dm6]	T	C	4.973e^-5	0.818	INTRON CG18769
3L	18590783	3L_18590783_SNP [dm3] 3L_18597683_SNP [dm6]	T	A	4.998e^-5	0.818	UPSTREAM CR45390 DOWNSTREAM CR45389 INTERGENIC
3R	15828862	3R_15828862_INS [dm3] 3R_20003140_INS [dm6]	G	GAAGGAA	5.003e^-5	0.818	INTRON Hs6st
3L	17255593	3L_17255593_SNP [dm3] 3L_17262493_SNP [dm6]	A	T	5.133e^-5	0.818	INTRON CR43870
3R	15747345	3R_15747345_SNP [dm3] 3R_19921623_SNP [dm6]	G	A	5.142e^-5	0.818	UPSTREAM CR43282 DOWNSTREAM CG4462 EXON CR43282
2L	516236	2L_516236_SNP [dm3] 2L_516236_SNP [dm6]	C	T	5.154e^-5	0.818	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	11849735	2L_11849735_SNP [dm3] 2L_11849735_SNP [dm6]	A	G	5.264e^-5	0.818	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
3R	4606495	3R_4606495_SNP [dm3] 3R_8780773_SNP [dm6]	T	C	5.360e^-5	0.818	UTR_5_PRIME CG33189 UPSTREAM CG33191 & 1 other DOWNSTREAM Pif1A INTRON Pif1B & 1 other	TF binding site mE1_TFBS_cad
2L	7991690	2L_7991690_SNP [dm3] 2L_7991690_SNP [dm6]	A	G	5.366e^-5	0.818	UPSTREAM pes INTRON pes	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15747559	3R_15747559_SNP [dm3] 3R_19921837_SNP [dm6]	T	A	5.430e^-5	0.818	UTR_3_PRIME CG4462 UPSTREAM CR43282
2L	11848464	2L_11848464_SNP [dm3] 2L_11848464_SNP [dm6]	A	C	5.448e^-5	0.818	INTRON Pde1c & 1 other
X	4213981	X_4213981_SNP [dm3] X_4319948_SNP [dm6]	A	C	5.489e^-5	0.818	NON_SYNONYMOUS_CODING CG2982	TF binding site BDTNP1_TFBS_dl
2L	8447278	2L_8447278_SNP [dm3] 2L_8447278_SNP [dm6]	T	G	5.535e^-5	0.818	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	22594679	3R_22594679_SNP [dm3] 3R_26768957_SNP [dm6]	T	A	5.564e^-5	0.818	UPSTREAM CR45563 INTERGENIC
3R	4338773	3R_4338773_SNP [dm3] 3R_8513051_SNP [dm6]	G	T	5.593e^-5	0.818	UPSTREAM Or85c INTERGENIC
2L	19387212	2L_19387212_SNP [dm3] 2L_19387212_SNP [dm6]	G	C	5.695e^-5	0.818	SYNONYMOUS_CODING CG17549
3L	10264711	3L_10264711_SNP [dm3] 3L_10271611_SNP [dm6]	C	T	5.751e^-5	0.818	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	4338787	3R_4338787_SNP [dm3] 3R_8513065_SNP [dm6]	T	C	5.852e^-5	0.818	UPSTREAM Or85c INTERGENIC
2R	9328324	2R_9328324_SNP [dm3] 2R_13440819_SNP [dm6]	G	A	5.863e^-5	0.818	SYNONYMOUS_CODING cnn	TF binding site mE1_TFBS_cad
2L	3399496	2L_3399496_SNP [dm3] 2L_3399496_SNP [dm6]	T	G	6.064e^-5	0.818	DOWNSTREAM CG34175 INTERGENIC
3R	15196315	3R_15196315_SNP [dm3] 3R_19370593_SNP [dm6]	A	G	6.093e^-5	0.818	INTRON Ino80
3L	11663028	3L_11663028_SNP [dm3] 3L_11669928_SNP [dm6]	A	G	6.118e^-5	0.818	INTRON CG32085
X	5826390	X_5826390_SNP [dm3] X_5932357_SNP [dm6]	G	T	6.135e^-5	0.818	INTRON CG3726
X	19939238	X_19939238_SNP [dm3] X_20045205_SNP [dm6]	T	G	6.180e^-5	0.818	INTRON Dop2R
3R	10496273	3R_10496273_SNP [dm3] 3R_14670551_SNP [dm6]	G	A	6.193e^-5	0.818	SYNONYMOUS_CODING Meltrin	TF binding site mE1_TFBS_cad
3L	1086799	3L_1086799_SNP [dm3] 3L_1086799_SNP [dm6]	A	C	6.195e^-5	0.818	INTRON bab1
2R	16440068	2R_16440068_SNP [dm3] 2R_20552563_SNP [dm6]	C	T	6.208e^-5	0.818	UPSTREAM CG13430 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14680593	3L_14680593_SNP [dm3] 3L_14687493_SNP [dm6]	G	A	6.217e^-5	0.818	INTRON ome
3L	2175055	3L_2175055_SNP [dm3] 3L_2175055_SNP [dm6]	C	T	6.229e^-5	0.818	UPSTREAM CG15820 INTERGENIC
2R	15067090	2R_15067090_SNP [dm3] 2R_19179585_SNP [dm6]	C	T	6.276e^-5	0.818	UTR_5_PRIME hppy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2L	11829788	2L_11829788_SNP [dm3] 2L_11829788_SNP [dm6]	C	T	6.387e^-5	0.818	UPSTREAM esc INTRON Pde1c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7020566	2L_7020566_SNP [dm3] 2L_7020566_SNP [dm6]	T	G	6.394e^-5	0.818	INTRON ade3
2R	9327961	2R_9327961_SNP [dm3] 2R_13440456_SNP [dm6]	A	T	6.451e^-5	0.818	SYNONYMOUS_CODING cnn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4143125	2L_4143125_DEL [dm3] 2L_4143125_DEL [dm6]	TAGATTGAATGTGAA...	T	6.467e^-5	0.818	INTERGENIC
2L	15003144	2L_15003144_SNP [dm3] 2L_15003144_SNP [dm6]	C	T	6.499e^-5	0.818	INTERGENIC
3L	22435648	3L_22435648_SNP [dm3] 3L_22442548_SNP [dm6]	A	C	6.531e^-5	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4847561	2L_4847561_SNP [dm3] 2L_4847561_SNP [dm6]	C	T	6.582e^-5	0.818	UPSTREAM mxt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4635986	3L_4635986_SNP [dm3] 3L_4635986_SNP [dm6]	C	G	6.637e^-5	0.818	DOWNSTREAM axo INTRON axo	TF binding site mE1_TFBS_hkb
3R	10434525	3R_10434525_SNP [dm3] 3R_14608803_SNP [dm6]	T	C	6.683e^-5	0.818	UPSTREAM CG14853 DOWNSTREAM stumps INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11849869	2L_11849869_DEL [dm3] 2L_11849869_DEL [dm6]	TTTTA	G	6.713e^-5	0.818	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
2R	14546695	2R_14546695_SNP [dm3] 2R_18659190_SNP [dm6]	A	T	6.749e^-5	0.818	SYNONYMOUS_CODING Gint3 UTR_3_PRIME CG42306 UPSTREAM SP2637	TF binding site mE1_TFBS_sens
3L	18260277	3L_18260277_SNP [dm3] 3L_18267177_SNP [dm6]	A	T	6.761e^-5	0.818	INTERGENIC
X	10857737	X_10857737_SNP [dm3] X_10963704_SNP [dm6]	T	A	6.809e^-5	0.818	UTR_3_PRIME Myo10A DOWNSTREAM C901
3R	15254055	3R_15254055_SNP [dm3] 3R_19428333_SNP [dm6]	C	A	6.827e^-5	0.818	INTRON CG31221
2L	11849815	2L_11849815_SNP [dm3] 2L_11849815_SNP [dm6]	A	T	6.846e^-5	0.818	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
2L	19392555	2L_19392555_SNP [dm3] 2L_19392555_SNP [dm6]	G	A	6.929e^-5	0.818	SYNONYMOUS_CODING CG17544	TF binding site mE1_TFBS_cad
3L	6789350	3L_6789350_SNP [dm3] 3L_6796250_SNP [dm6]	T	A	6.990e^-5	0.818	INTERGENIC
X	10228789	X_10228789_SNP [dm3] X_10334756_SNP [dm6]	C	T	7.053e^-5	0.818	INTRON CG43740	TF binding site mE1_TFBS_HSA
X	9459789	X_9459789_INS [dm3] X_9565756_INS [dm6]	T	TTAATAATCACTCAAA...	7.084e^-5	0.818	INTRON Cubn
3R	23338745	3R_23338745_SNP [dm3] 3R_27513023_SNP [dm6]	T	A	7.095e^-5	0.818	INTERGENIC
2L	14009855	2L_14009855_INS [dm3] 2L_14009855_INS [dm6]	T	TT	7.165e^-5	0.818	DOWNSTREAM tRNA:Q:34E INTERGENIC
X	16817058	X_16817058_SNP [dm3] X_16923025_SNP [dm6]	A	G	7.170e^-5	0.818	INTRON CG4928
2L	8370138	2L_8370138_SNP [dm3] 2L_8370138_SNP [dm6]	C	G	7.172e^-5	0.818	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
X	6542788	X_6542788_SNP [dm3] X_6648755_SNP [dm6]	A	G	7.204e^-5	0.818	NON_SYNONYMOUS_CODING pigs	TF binding site mE1_TFBS_chinmo
2L	19405050	2L_19405050_SNP [dm3] 2L_19405050_SNP [dm6]	T	A	7.205e^-5	0.818	UPSTREAM Pax INTRON Pax	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3L	4426085	3L_4426085_SNP [dm3] 3L_4426085_SNP [dm6]	T	C	7.236e^-5	0.818	SYNONYMOUS_CODING CG15020
3L	2164106	3L_2164106_SNP [dm3] 3L_2164106_SNP [dm6]	C	T	7.298e^-5	0.818	UPSTREAM CG15822 INTERGENIC
3L	16322917	3L_16322917_SNP [dm3] 3L_16329817_SNP [dm6]	A	G	7.320e^-5	0.818	UTR_5_PRIME CG33061 DOWNSTREAM CG13058
2R	13501315	2R_13501315_SNP [dm3] 2R_17613810_SNP [dm6]	A	G	7.489e^-5	0.818	INTRON CG10936
2R	9251974	2R_9251974_SNP [dm3] 2R_13364469_SNP [dm6]	G	A	7.520e^-5	0.818	INTERGENIC
X	21160839	X_21160839_SNP [dm3] X_21289812_SNP [dm6]	T	C	7.525e^-5	0.818	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12767669	X_12767669_SNP [dm3] X_12873636_SNP [dm6]	G	A	7.611e^-5	0.818	INTRON Pde9
2L	14977708	2L_14977708_SNP [dm3] 2L_14977708_SNP [dm6]	A	T	7.630e^-5	0.818	INTRON mol
3R	10434567	3R_10434567_SNP [dm3] 3R_14608845_SNP [dm6]	C	T	7.637e^-5	0.818	UPSTREAM CG14853 DOWNSTREAM stumps INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	20788241	3L_20788241_SNP [dm3] 3L_20795141_SNP [dm6]	T	A	7.721e^-5	0.818	DOWNSTREAM CR43706 EXON CR43705	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	1281145	3L_1281145_SNP [dm3] 3L_1281145_SNP [dm6]	A	G	7.730e^-5	0.818	INTRON CG32333
X	5251313	X_5251313_SNP [dm3] X_5357280_SNP [dm6]	A	T	7.759e^-5	0.818	UPSTREAM SK INTRON SK
2R	11966455	2R_11966455_SNP [dm3] 2R_16078950_SNP [dm6]	T	C	7.814e^-5	0.818	UPSTREAM CR43415 INTERGENIC
2R	20566728	2R_20566728_MNP [dm3] 2R_24679205_MNP [dm6]	GAC	TTA	8.024e^-5	0.818	INTRON Mmp1
2L	8034607	2L_8034607_SNP [dm3] 2L_8034607_SNP [dm6]	C	T	8.118e^-5	0.818	INTRON CG7367 & 1 other
3R	11246634	3R_11246634_SNP [dm3] 3R_15420912_SNP [dm6]	A	G	8.126e^-5	0.818	DOWNSTREAM CG6118 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
3R	20489370	3R_20489370_SNP [dm3] 3R_24663648_SNP [dm6]	G	T	8.272e^-5	0.818	INTRON slo	regulatory region REDfly_CRMs
3L	14869867	3L_14869867_SNP [dm3] 3L_14876767_SNP [dm6]	G	T	8.291e^-5	0.818	INTRON CG17839
X	11579083	X_11579083_SNP [dm3] X_11685050_SNP [dm6]	G	A	8.347e^-5	0.818	INTRON bif
3R	14180359	3R_14180359_SNP [dm3] 3R_18354637_SNP [dm6]	G	A	8.350e^-5	0.818	SYNONYMOUS_CODING CG15803	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14648343	2R_14648343_SNP [dm3] 2R_18760838_SNP [dm6]	A	G	8.484e^-5	0.818	UPSTREAM Jabba & 1 other INTRON Jabba
X	7897315	X_7897315_SNP [dm3] X_8003282_SNP [dm6]	G	C	8.486e^-5	0.818	INTRON Tbh
2R	14648425	2R_14648425_DEL [dm3] 2R_18760920_DEL [dm6]	TT	T	8.506e^-5	0.818	UTR_5_PRIME Jabba UPSTREAM Jabba & 1 other
X	16812326	X_16812326_SNP [dm3] X_16918293_SNP [dm6]	A	C	8.721e^-5	0.818	INTRON CG4928
X	14856541	X_14856541_SNP [dm3] X_14962508_SNP [dm6]	G	A	8.737e^-5	0.818	INTRON eag
X	6879148	X_6879148_DEL [dm3] X_6985115_DEL [dm6]	TT	T	8.744e^-5	0.818	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	13977689	2L_13977689_SNP [dm3] 2L_13977689_SNP [dm6]	C	T	8.764e^-5	0.818	SPLICE_SITE_REGION Cyp28a5 UPSTREAM NimC1 INTRON Cyp28a5	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	10857978	X_10857978_DEL [dm3] X_10963945_DEL [dm6]	AATA	A	8.786e^-5	0.818	UTR_3_PRIME Myo10A DOWNSTREAM C901
X	5251310	X_5251310_SNP [dm3] X_5357277_SNP [dm6]	G	A	8.947e^-5	0.818	UPSTREAM SK INTRON SK
2R	8626533	2R_8626533_SNP [dm3] 2R_12739028_SNP [dm6]	A	T	9.001e^-5	0.818	INTRON CG42663
2L	3267680	2L_3267680_SNP [dm3] 2L_3267680_SNP [dm6]	G	A	9.009e^-5	0.818	UPSTREAM CR44484 INTERGENIC
3L	16570370	3L_16570370_SNP [dm3] 3L_16577270_SNP [dm6]	G	A	9.108e^-5	0.818	NON_SYNONYMOUS_CODING nxf2 DOWNSTREAM mbf1	transposable element FlyBase
3L	11662517	3L_11662517_SNP [dm3] 3L_11669417_SNP [dm6]	A	G	9.116e^-5	0.818	INTRON CG32085
3R	19000933	3R_19000933_SNP [dm3] 3R_23175211_SNP [dm6]	C	G	9.148e^-5	0.818	INTRON Irk1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	19000934	3R_19000934_SNP [dm3] 3R_23175212_SNP [dm6]	G	C	9.148e^-5	0.818	INTRON Irk1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	3154423	2L_3154423_SNP [dm3] 2L_3154423_SNP [dm6]	G	C	9.197e^-5	0.818	INTRON Mad
X	16710093	X_16710093_SNP [dm3] X_16816060_SNP [dm6]	G	A	9.235e^-5	0.818	UPSTREAM CG4829 & 1 other INTRON CG4829
X	14042755	X_14042755_INS [dm3] X_14148722_INS [dm6]	A	AGAA	9.243e^-5	0.818	INTERGENIC
3R	14635934	3R_14635934_SNP [dm3] 3R_18810212_SNP [dm6]	A	G	9.246e^-5	0.818	INTRON CG18208
X	9459153	X_9459153_SNP [dm3] X_9565120_SNP [dm6]	T	G	9.282e^-5	0.818	SYNONYMOUS_CODING Cubn	TF binding site mE1_TFBS_HSA
3L	6546938	3L_6546938_SNP [dm3] 3L_6553838_SNP [dm6]	C	T	9.289e^-5	0.818	INTRON CG18769
3R	22501268	3R_22501268_SNP [dm3] 3R_26675546_SNP [dm6]	A	C	9.328e^-5	0.818	INTRON beat-VII
3R	2598712	3R_2598712_SNP [dm3] 3R_6772990_SNP [dm6]	G	C	9.335e^-5	0.818	INTRON CR42721
2L	7646277	2L_7646277_SNP [dm3] 2L_7646277_SNP [dm6]	A	T	9.367e^-5	0.818	DOWNSTREAM Slob INTRON Slob
3R	14184710	3R_14184710_DEL [dm3] 3R_18358988_DEL [dm6]	AA	A	9.512e^-5	0.818	INTRON CG15803
2L	19390999	2L_19390999_SNP [dm3] 2L_19390999_SNP [dm6]	G	A	9.515e^-5	0.818	SYNONYMOUS_CODING CG17544 UPSTREAM CG17549	TF binding site mE1_TFBS_chinmo
2L	10451632	2L_10451632_SNP [dm3] 2L_10451632_SNP [dm6]	A	G	9.528e^-5	0.818	SYNONYMOUS_CODING ppk10
3L	1866710	3L_1866710_SNP [dm3] 3L_1866710_SNP [dm6]	C	A	9.565e^-5	0.818	INTRON CG12025	TF binding site mE1_TFBS_cad
2L	19392444	2L_19392444_SNP [dm3] 2L_19392444_SNP [dm6]	C	T	9.591e^-5	0.818	SYNONYMOUS_CODING CG17544	TF binding site mE1_TFBS_cad
3R	26134311	3R_26134311_SNP [dm3] 3R_30308589_SNP [dm6]	A	T	9.694e^-5	0.818	INTRON hdc
3R	10107235	3R_10107235_SNP [dm3] 3R_14281513_SNP [dm6]	G	T	9.871e^-5	0.818	INTRON trx
3L	909717	3L_909717_SNP [dm3] 3L_909717_SNP [dm6]	T	A	9.985e^-5	0.818	SYNONYMOUS_CODING nerfin-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14977694	2L_14977694_SNP [dm3] 2L_14977694_SNP [dm6]	T	A	9.995e^-5	0.818	INTRON mol
2L	14977696	2L_14977696_DEL [dm3] 2L_14977696_DEL [dm6]	TTA	GC	9.995e^-5	0.818	INTRON mol
2L	14977703	2L_14977703_MNP [dm3] 2L_14977703_MNP [dm6]	AAG	GCT	9.995e^-5	0.818	INTRON mol
2L	14977713	2L_14977713_MNP [dm3] 2L_14977713_MNP [dm6]	AAG	TTT	9.995e^-5	0.818	INTRON mol
2L	14977719	2L_14977719_DEL [dm3] 2L_14977719_DEL [dm6]	ACCAAA	G	9.995e^-5	0.818	INTRON mol
2L	14977751	2L_14977751_SNP [dm3] 2L_14977751_SNP [dm6]	A	G	9.995e^-5	0.818	INTRON mol
3R	5445791	3R_5445791_DEL [dm3] 3R_9620069_DEL [dm6]	AAACAAACTCAAA...	A	1.004e^-4	0.818	INTRON CG8312
2L	17286077	2L_17286077_INS [dm3] 2L_17286077_INS [dm6]	A	AATGAAATGAAATAATGAAA...	1.010e^-4	0.818	UPSTREAM CG15140 INTERGENIC
X	7901428	X_7901428_SNP [dm3] X_8007395_SNP [dm6]	T	A	1.013e^-4	0.818	INTRON Tbh	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
X	10221415	X_10221415_SNP [dm3] X_10327382_SNP [dm6]	T	G	1.018e^-4	0.818	SYNONYMOUS_CODING CG2909	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7646154	2L_7646154_SNP [dm3] 2L_7646154_SNP [dm6]	T	G	1.020e^-4	0.818	DOWNSTREAM Slob INTRON Slob
2L	9851153	2L_9851153_SNP [dm3] 2L_9851153_SNP [dm6]	A	G	1.023e^-4	0.818	INTRON nAChRalpha6
3L	14680598	3L_14680598_SNP [dm3] 3L_14687498_SNP [dm6]	G	A	1.028e^-4	0.818	INTRON ome
3L	957168	3L_957168_DEL [dm3] 3L_957168_DEL [dm6]	TT	T	1.036e^-4	0.818	INTRON Glut1
3R	17509093	3R_17509093_SNP [dm3] 3R_21683371_SNP [dm6]	A	G	1.057e^-4	0.818	INTRON CG31176	TF binding site mE1_TFBS_cad
3R	15747529	3R_15747529_SNP [dm3] 3R_19921807_SNP [dm6]	C	T	1.066e^-4	0.818	UTR_3_PRIME CG4462 UPSTREAM CR43282
2L	16787689	2L_16787689_SNP [dm3] 2L_16787689_SNP [dm6]	A	C	1.067e^-4	0.818	INTRON Mhc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18260131	3L_18260131_SNP [dm3] 3L_18267031_SNP [dm6]	C	T	1.070e^-4	0.818	INTERGENIC
X	2691313	X_2691313_SNP [dm3] X_2797280_SNP [dm6]	T	C	1.073e^-4	0.818	UPSTREAM w INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z
3R	19879013	3R_19879013_SNP [dm3] 3R_24053291_SNP [dm6]	C	T	1.080e^-4	0.818	SYNONYMOUS_CODING CG5991	TF binding site mE1_TFBS_chinmo
3R	13903208	3R_13903208_SNP [dm3] 3R_18077486_SNP [dm6]	G	A	1.081e^-4	0.818	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	1344946	3L_1344946_SNP [dm3] 3L_1344946_SNP [dm6]	G	A	1.087e^-4	0.818	SYNONYMOUS_CODING Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3898280	2L_3898280_SNP [dm3] 2L_3898280_SNP [dm6]	A	T	1.087e^-4	0.818	INTRON capu
3R	12954681	3R_12954681_SNP [dm3] 3R_17128959_SNP [dm6]	C	T	1.091e^-4	0.818	SYNONYMOUS_CODING CG31265 DOWNSTREAM CG31269 & 1 other
2L	11848425	2L_11848425_SNP [dm3] 2L_11848425_SNP [dm6]	G	T	1.092e^-4	0.818	INTRON Pde1c & 1 other	TF binding site mE1_TFBS_HSA
2L	19405236	2L_19405236_SNP [dm3] 2L_19405236_SNP [dm6]	A	T	1.103e^-4	0.818	UPSTREAM Pax INTRON Pax	TF binding site mE1_TFBS_Kr
X	17833712	X_17833712_SNP [dm3] X_17939679_SNP [dm6]	G	A	1.105e^-4	0.818	DOWNSTREAM Sh INTRON Sh
2L	11645525	2L_11645525_SNP [dm3] 2L_11645525_SNP [dm6]	G	T	1.107e^-4	0.818	SYNONYMOUS_CODING CG6614 UTR_3_PRIME CG6614
2L	3129673	2L_3129673_SNP [dm3] 2L_3129673_SNP [dm6]	G	C	1.108e^-4	0.818	DOWNSTREAM CG15403 INTRON toc
3L	12816173	3L_12816173_SNP [dm3] 3L_12823073_SNP [dm6]	G	A	1.108e^-4	0.818	SYNONYMOUS_CODING CG42588
3R	1230974	3R_1230974_SNP [dm3] 3R_5405252_SNP [dm6]	A	C	1.110e^-4	0.818	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	15795976	2R_15795976_SNP [dm3] 2R_19908471_SNP [dm6]	T	G	1.110e^-4	0.818	INTERGENIC
3R	22120398	3R_22120398_SNP [dm3] 3R_26294676_SNP [dm6]	T	C	1.117e^-4	0.818	INTERGENIC	TF binding site mE1_TFBS_inv
3L	1860894	3L_1860894_SNP [dm3] 3L_1860894_SNP [dm6]	C	T	1.128e^-4	0.818	SYNONYMOUS_CODING R	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	16864219	2R_16864219_SNP [dm3] 2R_20976714_SNP [dm6]	G	A	1.134e^-4	0.818	UPSTREAM CG9344 DOWNSTREAM CG15650 INTRON CG34115	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	13903210	3R_13903210_SNP [dm3] 3R_18077488_SNP [dm6]	T	C	1.135e^-4	0.818	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	10316451	3R_10316451_SNP [dm3] 3R_14490729_SNP [dm6]	A	G	1.136e^-4	0.818	INTERGENIC
3L	1344715	3L_1344715_SNP [dm3] 3L_1344715_SNP [dm6]	A	G	1.140e^-4	0.818	SYNONYMOUS_CODING Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7975710	3L_7975710_SNP [dm3] 3L_7982610_SNP [dm6]	G	A	1.143e^-4	0.818	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	20809588	3L_20809588_SNP [dm3] 3L_20816488_SNP [dm6]	G	A	1.160e^-4	0.818	UTR_5_PRIME Pka-R1 UPSTREAM CG3618 DOWNSTREAM Mst77F INTRON Pka-R1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8447265	2L_8447265_SNP [dm3] 2L_8447265_SNP [dm6]	A	G	1.168e^-4	0.818	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	14991674	2R_14991674_SNP [dm3] 2R_19104169_SNP [dm6]	C	A	1.169e^-4	0.818	INTRON 5-HT1A
2R	3578935	2R_3578935_SNP [dm3] 2R_7691430_SNP [dm6]	C	T	1.178e^-4	0.818	INTRON CG1399	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18253441	X_18253441_SNP [dm3] X_18359408_SNP [dm6]	G	A	1.179e^-4	0.818	SYNONYMOUS_CODING CG6106
3L	2993087	3L_2993087_SNP [dm3] 3L_2993087_SNP [dm6]	G	A	1.192e^-4	0.818	INTERGENIC
X	8029048	X_8029048_SNP [dm3] X_8135015_SNP [dm6]	T	G	1.196e^-4	0.818	UPSTREAM CG2120 DOWNSTREAM CG10958 INTRON cyr
2L	14977700	2L_14977700_SNP [dm3] 2L_14977700_SNP [dm6]	T	A	1.197e^-4	0.818	INTRON mol
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	1.201e^-4	0.818	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	957182	3L_957182_SNP [dm3] 3L_957182_SNP [dm6]	A	T	1.208e^-4	0.818	INTRON Glut1
3R	10927053	3R_10927053_SNP [dm3] 3R_15101331_SNP [dm6]	G	A	1.220e^-4	0.818	SYNONYMOUS_CODING CG42788	TF binding site mE1_TFBS_chinmo
2R	15138052	2R_15138052_SNP [dm3] 2R_19250547_SNP [dm6]	A	G	1.221e^-4	0.818	SYNONYMOUS_CODING wbl DOWNSTREAM CG33454	TF binding site BDTNP1_TFBS_z
2L	4145256	2L_4145256_SNP [dm3] 2L_4145256_SNP [dm6]	T	A	1.222e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8167858	2L_8167858_SNP [dm3] 2L_8167858_SNP [dm6]	G	C	1.223e^-4	0.818	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	7930695	X_7930695_SNP [dm3] X_8036662_SNP [dm6]	T	C	1.234e^-4	0.818	INTRON CG2233
2L	7868994	2L_7868994_SNP [dm3] 2L_7868994_SNP [dm6]	G	A	1.249e^-4	0.818	INTRON Proc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15068574	3R_15068574_SNP [dm3] 3R_19242852_SNP [dm6]	T	A	1.255e^-4	0.818	INTRON unc79	TF binding site mE1_TFBS_cad
3R	22253533	3R_22253533_SNP [dm3] 3R_26427811_SNP [dm6]	C	A	1.263e^-4	0.818	UPSTREAM CR43434 INTRON CR31084
3L	18260242	3L_18260242_SNP [dm3] 3L_18267142_SNP [dm6]	T	C	1.268e^-4	0.818	INTERGENIC
2L	14067616	2L_14067616_DEL [dm3] 2L_14067616_DEL [dm6]	GAG	G	1.269e^-4	0.818	INTRON nAChRalpha5
3L	16432980	3L_16432980_SNP [dm3] 3L_16439880_SNP [dm6]	A	T	1.288e^-4	0.818	INTRON CG33158 & 1 other
3R	22165114	3R_22165114_SNP [dm3] 3R_26339392_SNP [dm6]	T	A	1.291e^-4	0.818	INTRON CG33970
2R	14991665	2R_14991665_SNP [dm3] 2R_19104160_SNP [dm6]	C	A	1.305e^-4	0.818	INTRON 5-HT1A
3R	5448643	3R_5448643_SNP [dm3] 3R_9622921_SNP [dm6]	C	T	1.308e^-4	0.818	UPSTREAM CG8312 INTRON CG8312
2L	14956379	2L_14956379_SNP [dm3] 2L_14956379_SNP [dm6]	G	T	1.320e^-4	0.818	INTRON CG42313
2L	14009703	2L_14009703_INS [dm3] 2L_14009703_INS [dm6]	T	TAT	1.325e^-4	0.818	DOWNSTREAM CG42692 & 1 other INTERGENIC
2R	8402707	2R_8402707_SNP [dm3] 2R_12515202_SNP [dm6]	T	C	1.326e^-4	0.818	UPSTREAM CG13151 & 1 other INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_Ubx
3L	12816034	3L_12816034_SNP [dm3] 3L_12822934_SNP [dm6]	G	A	1.335e^-4	0.818	INTRON CG42588
X	5337816	X_5337816_SNP [dm3] X_5443783_SNP [dm6]	T	A	1.335e^-4	0.818	INTERGENIC
X	8178801	X_8178801_INS [dm3] X_8284768_INS [dm6]	T	TT	1.341e^-4	0.818	INTRON nAChRalpha3
3L	5884765	3L_5884765_SNP [dm3] 3L_5891665_SNP [dm6]	A	G	1.346e^-4	0.818	INTERGENIC
X	6878803	X_6878803_SNP [dm3] X_6984770_SNP [dm6]	C	T	1.353e^-4	0.818	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	898902	2L_898902_SNP [dm3] 2L_898902_SNP [dm6]	G	A	1.356e^-4	0.818	SYNONYMOUS_CODING Lsp1beta UPSTREAM CR45348	TF binding site mE1_TFBS_cad
3R	2734015	3R_2734015_SNP [dm3] 3R_6908293_SNP [dm6]	A	G	1.362e^-4	0.818	UTR_3_PRIME Antp INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run
2L	17255704	2L_17255704_SNP [dm3] 2L_17255704_SNP [dm6]	C	T	1.376e^-4	0.818	INTRON beat-IIIc
3L	13300662	3L_13300662_SNP [dm3] 3L_13307562_SNP [dm6]	G	C	1.378e^-4	0.818	INTERGENIC
3L	13300663	3L_13300663_SNP [dm3] 3L_13307563_SNP [dm6]	C	A	1.378e^-4	0.818	INTERGENIC
3R	10436941	3R_10436941_SNP [dm3] 3R_14611219_SNP [dm6]	G	C	1.379e^-4	0.818	INTRON CG14853
2L	11848437	2L_11848437_SNP [dm3] 2L_11848437_SNP [dm6]	T	G	1.392e^-4	0.818	INTRON Pde1c & 1 other	TF binding site mE1_TFBS_HSA
X	10569471	X_10569471_SNP [dm3] X_10675438_SNP [dm6]	A	C	1.399e^-4	0.818	INTRON X11Lbeta
3R	7736695	3R_7736695_SNP [dm3] 3R_11910973_SNP [dm6]	G	A	1.399e^-4	0.818	INTRON Cad87A
3L	2993100	3L_2993100_SNP [dm3] 3L_2993100_SNP [dm6]	G	A	1.400e^-4	0.818	INTERGENIC
3L	2993111	3L_2993111_SNP [dm3] 3L_2993111_SNP [dm6]	G	A	1.400e^-4	0.818	INTERGENIC
2R	19280642	2R_19280642_SNP [dm3] 2R_23393119_SNP [dm6]	T	A	1.401e^-4	0.818	START_GAINED CG3530 UTR_5_PRIME CG3530 INTRON CG3530	TF binding site mE1_TFBS_chinmo
X	20030555	X_20030555_INS [dm3] X_20136522_INS [dm6]	C	TAGTAGT	1.404e^-4	0.818		TF binding site mE1_TFBS_chinmo
X	8178709	X_8178709_SNP [dm3] X_8284676_SNP [dm6]	A	C	1.413e^-4	0.818	INTRON nAChRalpha3
2L	11848445	2L_11848445_SNP [dm3] 2L_11848445_SNP [dm6]	A	T	1.416e^-4	0.818	INTRON Pde1c & 1 other
2L	2798026	2L_2798026_SNP [dm3] 2L_2798026_SNP [dm6]	T	A	1.418e^-4	0.818	INTRON Syt1 EXON CR43821	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	19303661	2L_19303661_SNP [dm3] 2L_19303661_SNP [dm6]	C	A	1.423e^-4	0.818	INTERGENIC	TF binding site mE1_TFBS_cad
2L	17255810	2L_17255810_SNP [dm3] 2L_17255810_SNP [dm6]	A	C	1.427e^-4	0.818	INTRON beat-IIIc
3L	12153334	3L_12153334_SNP [dm3] 3L_12160234_SNP [dm6]	C	A	1.428e^-4	0.818	INTRON CG9760
3R	530535	3R_530535_SNP [dm3] 3R_4704813_SNP [dm6]	G	A	1.434e^-4	0.818	UTR_3_PRIME CG43427 INTRON CG43427	TF binding site mE1_TFBS_bab1
2L	14020868	2L_14020868_SNP [dm3] 2L_14020868_SNP [dm6]	A	G	1.437e^-4	0.818	UPSTREAM NimC3 DOWNSTREAM CR44849 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4144421	2L_4144421_SNP [dm3] 2L_4144421_SNP [dm6]	T	G	1.437e^-4	0.818	INTERGENIC
X	8018181	X_8018181_SNP [dm3] X_8124148_SNP [dm6]	G	A	1.437e^-4	0.818	INTRON cyr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4962089	2R_4962089_INS [dm3] 2R_9074584_INS [dm6]	T	TT	1.440e^-4	0.818	INTRON ana
2L	2705650	2L_2705650_SNP [dm3] 2L_2705650_SNP [dm6]	T	C	1.443e^-4	0.818	INTRON CG31690
2L	3129689	2L_3129689_INS [dm3] 2L_3129689_INS [dm6]	T	TAT	1.443e^-4	0.818	DOWNSTREAM CG15403 INTRON toc
3L	18646253	3L_18646253_SNP [dm3] 3L_18653153_SNP [dm6]	C	A	1.444e^-4	0.818	INTRON MYPT-75D
2R	15081370	2R_15081370_SNP [dm3] 2R_19193865_SNP [dm6]	A	T	1.445e^-4	0.818	INTRON hppy
3R	19190866	3R_19190866_SNP [dm3] 3R_23365144_SNP [dm6]	G	A	1.446e^-4	0.818	INTERGENIC
2L	15528434	2L_15528434_SNP [dm3] 2L_15528434_SNP [dm6]	T	C	1.450e^-4	0.818	INTERGENIC
X	9814806	X_9814806_DEL [dm3] X_9920773_DEL [dm6]	TT	T	1.458e^-4	0.818	INTERGENIC
3L	8696054	3L_8696054_SNP [dm3] 3L_8702954_SNP [dm6]	C	A	1.473e^-4	0.818	INTERGENIC
3L	4435032	3L_4435032_SNP [dm3] 3L_4435032_SNP [dm6]	C	T	1.474e^-4	0.818	SYNONYMOUS_CODING nAChRbeta1	TF binding site mE1_TFBS_cad
3L	7479975	3L_7479975_SNP [dm3] 3L_7486875_SNP [dm6]	T	C	1.479e^-4	0.818	SYNONYMOUS_CODING mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22511333	3R_22511333_SNP [dm3] 3R_26685611_SNP [dm6]	T	C	1.481e^-4	0.818	INTERGENIC
X	18760241	X_18760241_SNP [dm3] X_18866208_SNP [dm6]	A	C	1.482e^-4	0.818	INTRON CG34401	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	11848434	2L_11848434_SNP [dm3] 2L_11848434_SNP [dm6]	C	A	1.489e^-4	0.818	INTRON Pde1c & 1 other	TF binding site mE1_TFBS_HSA
2L	11848442	2L_11848442_SNP [dm3] 2L_11848442_SNP [dm6]	A	G	1.489e^-4	0.818	INTRON Pde1c & 1 other	TF binding site mE1_TFBS_HSA
3L	789740	3L_789740_SNP [dm3] 3L_789740_SNP [dm6]	G	T	1.489e^-4	0.818	INTERGENIC	TF binding site mE1_TFBS_cad
X	5908701	X_5908701_SNP [dm3] X_6014668_SNP [dm6]	T	C	1.493e^-4	0.818	DOWNSTREAM CR44499 INTERGENIC
3R	12898355	3R_12898355_SNP [dm3] 3R_17072633_SNP [dm6]	A	G	1.494e^-4	0.818	UTR_5_PRIME Ns1 UPSTREAM mRpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13977671	2L_13977671_SNP [dm3] 2L_13977671_SNP [dm6]	T	A	1.495e^-4	0.818	UPSTREAM NimC1 INTRON Cyp28a5	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	17296089	2R_17296089_SNP [dm3] 2R_21408584_SNP [dm6]	C	T	1.499e^-4	0.818	INTRON Sdc
3R	25405876	3R_25405876_SNP [dm3] 3R_29580154_SNP [dm6]	A	G	1.506e^-4	0.818	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14991587	2R_14991587_SNP [dm3] 2R_19104082_SNP [dm6]	C	A	1.512e^-4	0.818	INTRON 5-HT1A
2L	8370140	2L_8370140_SNP [dm3] 2L_8370140_SNP [dm6]	C	T	1.524e^-4	0.818	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
3L	952123	3L_952123_SNP [dm3] 3L_952123_SNP [dm6]	C	T	1.524e^-4	0.818	INTRON Glut1
3L	6386771	3L_6386771_SNP [dm3] 3L_6393671_SNP [dm6]	T	A	1.526e^-4	0.818	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	3521283	3L_3521283_SNP [dm3] 3L_3521283_SNP [dm6]	G	A	1.526e^-4	0.818	INTRON Eip63E
X	14840917	X_14840917_SNP [dm3] X_14946884_SNP [dm6]	T	C	1.527e^-4	0.818	INTRON pdgy
3R	4338838	3R_4338838_SNP [dm3] 3R_8513116_SNP [dm6]	A	G	1.533e^-4	0.818	UPSTREAM Or85c INTERGENIC
2L	17420871	2L_17420871_SNP [dm3] 2L_17420871_SNP [dm6]	T	A	1.534e^-4	0.818	INTRON Dif
3R	5448651	3R_5448651_SNP [dm3] 3R_9622929_SNP [dm6]	A	T	1.537e^-4	0.818	UPSTREAM CG8312 INTRON CG8312
3L	20166163	3L_20166163_SNP [dm3] 3L_20173063_SNP [dm6]	T	A	1.543e^-4	0.818	INTRON CG42674	TF binding site BDTNP1_TFBS_twi
X	12929723	X_12929723_SNP [dm3] X_13035690_SNP [dm6]	A	G	1.546e^-4	0.818	INTRON rad
3L	16733635	3L_16733635_SNP [dm3] 3L_16740535_SNP [dm6]	G	A	1.546e^-4	0.818	INTERGENIC
2L	14700735	2L_14700735_SNP [dm3] 2L_14700735_SNP [dm6]	T	A	1.548e^-4	0.818	INTERGENIC
3L	2184786	3L_2184786_SNP [dm3] 3L_2184786_SNP [dm6]	T	A	1.558e^-4	0.818	INTERGENIC
X	21160844	X_21160844_SNP [dm3] X_21289817_SNP [dm6]	G	C	1.564e^-4	0.818	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15068553	3R_15068553_SNP [dm3] 3R_19242831_SNP [dm6]	A	G	1.575e^-4	0.818	SPLICE_SITE_REGION unc79 INTRON unc79	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	17255614	3L_17255614_SNP [dm3] 3L_17262514_SNP [dm6]	A	C	1.579e^-4	0.818	INTRON CR43870
3L	14869879	3L_14869879_SNP [dm3] 3L_14876779_SNP [dm6]	C	A	1.586e^-4	0.818	INTRON CG17839
3R	27238440	3R_27238440_SNP [dm3] 3R_31412718_SNP [dm6]	G	A	1.590e^-4	0.818	INTRON Gprk2
2L	14009801	2L_14009801_SNP [dm3] 2L_14009801_SNP [dm6]	A	T	1.592e^-4	0.818	DOWNSTREAM CG42692 & 1 other INTERGENIC
2R	14515817	2R_14515817_SNP [dm3] 2R_18628312_SNP [dm6]	C	T	1.593e^-4	0.818	SYNONYMOUS_CODING Eip55E DOWNSTREAM Sec6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	13588371	3L_13588371_SNP [dm3] 3L_13595271_SNP [dm6]	A	G	1.604e^-4	0.818	INTRON bru-3
X	11534816	X_11534816_SNP [dm3] X_11640783_SNP [dm6]	G	A	1.609e^-4	0.818	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl
2R	7823251	2R_7823251_SNP [dm3] 2R_11935746_SNP [dm6]	T	A	1.610e^-4	0.818	INTERGENIC
X	7894931	X_7894931_SNP [dm3] X_8000898_SNP [dm6]	G	A	1.613e^-4	0.818	INTRON Tbh
2R	8722887	2R_8722887_SNP [dm3] 2R_12835382_SNP [dm6]	C	G	1.614e^-4	0.818	INTERGENIC
2L	19387782	2L_19387782_SNP [dm3] 2L_19387782_SNP [dm6]	T	G	1.616e^-4	0.818	INTRON CG17549
3L	4404656	3L_4404656_SNP [dm3] 3L_4404656_SNP [dm6]	A	T	1.622e^-4	0.818	SYNONYMOUS_CODING Syx17 DOWNSTREAM CG15019	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18624335	3L_18624335_SNP [dm3] 3L_18631235_SNP [dm6]	C	T	1.626e^-4	0.818	INTRON MYPT-75D
X	20026366	X_20026366_SNP [dm3] X_20132333_SNP [dm6]	G	C	1.634e^-4	0.818	UPSTREAM CG42582 INTERGENIC
X	11591320	X_11591320_SNP [dm3] X_11697287_SNP [dm6]	A	T	1.634e^-4	0.818	INTRON PhKgamma	TF binding site mE1_TFBS_sens
X	5908669	X_5908669_SNP [dm3] X_6014636_SNP [dm6]	A	G	1.634e^-4	0.818	DOWNSTREAM CR44499 INTERGENIC
2L	4500263	2L_4500263_SNP [dm3] 2L_4500263_SNP [dm6]	T	C	1.635e^-4	0.818	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14824970	X_14824970_SNP [dm3] X_14930937_SNP [dm6]	A	C	1.643e^-4	0.818	SYNONYMOUS_CODING Flo2	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	516246	2L_516246_SNP [dm3] 2L_516246_SNP [dm6]	T	C	1.645e^-4	0.818	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	21296662	3R_21296662_SNP [dm3] 3R_25470940_SNP [dm6]	G	T	1.648e^-4	0.818	INTRON Fur1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	18636906	X_18636906_SNP [dm3] X_18742873_SNP [dm6]	C	T	1.656e^-4	0.818	INTERGENIC
2L	14957517	2L_14957517_SNP [dm3] 2L_14957517_SNP [dm6]	C	A	1.667e^-4	0.818	INTRON CG42313
3R	26196600	3R_26196600_SNP [dm3] 3R_30370878_SNP [dm6]	A	G	1.669e^-4	0.818	UTR_3_PRIME hdc
X	18253456	X_18253456_SNP [dm3] X_18359423_SNP [dm6]	G	A	1.676e^-4	0.818	NON_SYNONYMOUS_CODING CG6106
X	7994659	X_7994659_INS [dm3] X_8100626_INS [dm6]	T	TTT	1.682e^-4	0.818	UPSTREAM CG2258 INTRON CG2258	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	502584	3R_502584_SNP [dm3] 3R_4676862_SNP [dm6]	T	G	1.684e^-4	0.818	INTRON CG43427
X	7898799	X_7898799_INS [dm3] X_8004766_INS [dm6]	G	GTG	1.685e^-4	0.818	INTRON Tbh
3L	18604808	3L_18604808_SNP [dm3] 3L_18611708_SNP [dm6]	A	G	1.692e^-4	0.818	UTR_3_PRIME CG32201 UPSTREAM CG32199 INTRON CG4174 & 1 other
X	10857738	X_10857738_SNP [dm3] X_10963705_SNP [dm6]	T	C	1.702e^-4	0.818	UTR_3_PRIME Myo10A DOWNSTREAM C901
3R	17509202	3R_17509202_SNP [dm3] 3R_21683480_SNP [dm6]	G	T	1.708e^-4	0.818	INTRON CG31176	TF binding site mE1_TFBS_cad
3L	5885577	3L_5885577_SNP [dm3] 3L_5892477_SNP [dm6]	C	A	1.715e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16864005	2R_16864005_SNP [dm3] 2R_20976500_SNP [dm6]	A	T	1.721e^-4	0.818	UPSTREAM CG9344 INTRON CG34115	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	5892611	X_5892611_SNP [dm3] X_5998578_SNP [dm6]	G	A	1.722e^-4	0.818	SYNONYMOUS_CODING CG4766	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	20163359	3L_20163359_SNP [dm3] 3L_20170259_SNP [dm6]	C	A	1.722e^-4	0.818	INTRON CG42674	TF binding site BDTNP1_TFBS_twi
3R	10668880	3R_10668880_SNP [dm3] 3R_14843158_SNP [dm6]	C	A	1.727e^-4	0.818	INTRON btsz
3R	11246805	3R_11246805_DEL [dm3] 3R_15421083_DEL [dm6]	TT	A	1.732e^-4	0.818	DOWNSTREAM CG6118 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
3L	8799160	3L_8799160_SNP [dm3] 3L_8806060_SNP [dm6]	T	A	1.732e^-4	0.818	NON_SYNONYMOUS_CODING CG13312 DOWNSTREAM CG34427	TF binding site mE1_TFBS_chinmo
3L	18569531	3L_18569531_SNP [dm3] 3L_18576431_SNP [dm6]	A	G	1.736e^-4	0.818	DOWNSTREAM AstC-R1 INTERGENIC
2L	4147030	2L_4147030_SNP [dm3] 2L_4147030_SNP [dm6]	C	T	1.742e^-4	0.818	INTERGENIC
3R	21295516	3R_21295516_DEL [dm3] 3R_25469794_DEL [dm6]	ATTAA	A	1.749e^-4	0.818	INTRON Fur1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	7604889	3R_7604889_SNP [dm3] 3R_11779167_SNP [dm6]	T	C	1.754e^-4	0.818	UPSTREAM l_3_neo38 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk
3R	10811112	3R_10811112_SNP [dm3] 3R_14985390_SNP [dm6]	T	C	1.769e^-4	0.818	INTERGENIC
3R	14180450	3R_14180450_SNP [dm3] 3R_18354728_SNP [dm6]	C	T	1.771e^-4	0.818	NON_SYNONYMOUS_CODING CG15803	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19387778	2L_19387778_SNP [dm3] 2L_19387778_SNP [dm6]	A	G	1.771e^-4	0.818	INTRON CG17549
3R	15114972	3R_15114972_SNP [dm3] 3R_19289250_SNP [dm6]	C	A	1.774e^-4	0.818	EXON CR43451
2L	15261971	2L_15261971_SNP [dm3] 2L_15261971_SNP [dm6]	T	C	1.780e^-4	0.818	NON_SYNONYMOUS_CODING yuri
3R	24440690	3R_24440690_SNP [dm3] 3R_28614968_SNP [dm6]	G	T	1.783e^-4	0.818	SYNONYMOUS_CODING CG10011	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2393649	3L_2393649_SNP [dm3] 3L_2393649_SNP [dm6]	G	C	1.789e^-4	0.818	INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	22439138	3L_22439138_SNP [dm3] 3L_22446038_SNP [dm6]	G	A	1.789e^-4	0.818	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	16575204	3L_16575204_SNP [dm3] 3L_16582104_SNP [dm6]	T	A	1.791e^-4	0.818	UPSTREAM Smn & 1 other EXON CR43727	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	9413950	3R_9413950_SNP [dm3] 3R_13588228_SNP [dm6]	G	A	1.794e^-4	0.818	SYNONYMOUS_CODING CG14370
3L	10725004	3L_10725004_SNP [dm3] 3L_10731904_SNP [dm6]	T	G	1.798e^-4	0.818	INTERGENIC
3L	9417438	3L_9417438_SNP [dm3] 3L_9424338_SNP [dm6]	T	C	1.801e^-4	0.818	SYNONYMOUS_CODING aay INTRON CG3967	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12970290	2R_12970290_SNP [dm3] 2R_17082785_SNP [dm6]	A	G	1.812e^-4	0.818	INTRON CG30460
3R	18499868	3R_18499868_DEL [dm3] 3R_22674146_DEL [dm6]	GAGTACAAACTTTGC...	G	1.812e^-4	0.818	UTR_5_PRIME CG45058 INTRON CG45058	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	789726	3L_789726_SNP [dm3] 3L_789726_SNP [dm6]	A	G	1.813e^-4	0.818	INTERGENIC	TF binding site mE1_TFBS_cad
3R	2705648	3R_2705648_SNP [dm3] 3R_6879926_SNP [dm6]	G	T	1.813e^-4	0.818	INTRON CR44931	regulatory region FlyBase REDfly_CRMs
2L	14702724	2L_14702724_SNP [dm3] 2L_14702724_SNP [dm6]	C	G	1.815e^-4	0.818	INTERGENIC
3L	8885320	3L_8885320_SNP [dm3] 3L_8892220_SNP [dm6]	T	G	1.819e^-4	0.818	SPLICE_SITE_REGION Mcm7 INTRON Mcm7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6016861	2R_6016861_SNP [dm3] 2R_10129356_SNP [dm6]	T	G	1.819e^-4	0.818	INTRON gem
3L	12792354	3L_12792354_SNP [dm3] 3L_12799254_SNP [dm6]	T	G	1.821e^-4	0.818	INTRON Atg1
3R	10805219	3R_10805219_SNP [dm3] 3R_14979497_SNP [dm6]	T	G	1.823e^-4	0.818	INTERGENIC
2L	15917504	2L_15917504_SNP [dm3] 2L_15917504_SNP [dm6]	T	A	1.830e^-4	0.818	UTR_3_PRIME CG13244 INTRON beat-Ib
3L	18376146	3L_18376146_SNP [dm3] 3L_18383046_SNP [dm6]	G	T	1.834e^-4	0.818	INTERGENIC
3L	7476130	3L_7476130_SNP [dm3] 3L_7483030_SNP [dm6]	A	T	1.835e^-4	0.818	INTERGENIC
3L	7320256	3L_7320256_SNP [dm3] 3L_7327156_SNP [dm6]	G	A	1.841e^-4	0.818	SYNONYMOUS_CODING CG8602 DOWNSTREAM Rint1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4848226	2L_4848226_SNP [dm3] 2L_4848226_SNP [dm6]	C	T	1.844e^-4	0.818	SYNONYMOUS_CODING CG11927 UPSTREAM mxt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3R	2737086	3R_2737086_SNP [dm3] 3R_6911364_SNP [dm6]	C	T	1.848e^-4	0.818	INTRON Antp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	4316780	3R_4316780_SNP [dm3] 3R_8491058_SNP [dm6]	A	G	1.856e^-4	0.818	INTERGENIC
X	6878514	X_6878514_SNP [dm3] X_6984481_SNP [dm6]	T	C	1.857e^-4	0.818	UTR_5_PRIME ogre INTRON ogre EXON CR44084	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	19405908	2L_19405908_SNP [dm3] 2L_19405908_SNP [dm6]	C	T	1.858e^-4	0.818	INTRON Pax	TF binding site mE1_TFBS_Kr
3R	25347087	3R_25347087_SNP [dm3] 3R_29521365_SNP [dm6]	G	A	1.859e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	14957232	2L_14957232_SNP [dm3] 2L_14957232_SNP [dm6]	C	T	1.864e^-4	0.818	INTRON CG42313
3L	16565368	3L_16565368_SNP [dm3] 3L_16572268_SNP [dm6]	A	G	1.864e^-4	0.818	INTRON Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	7025296	2L_7025296_SNP [dm3] 2L_7025296_SNP [dm6]	C	A	1.865e^-4	0.818	NON_SYNONYMOUS_CODING CG31908	TF binding site mE1_TFBS_cad
3R	14120143	3R_14120143_SNP [dm3] 3R_18294421_SNP [dm6]	C	T	1.869e^-4	0.818	INTRON l_3_05822
2R	16436935	2R_16436935_SNP [dm3] 2R_20549430_SNP [dm6]	C	T	1.873e^-4	0.818	SYNONYMOUS_CODING Cpr57A UTR_5_PRIME Obp57d DOWNSTREAM CG13430 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	9096642	2R_9096642_SNP [dm3] 2R_13209137_SNP [dm6]	T	C	1.874e^-4	0.818	NON_SYNONYMOUS_CODING FLASH DOWNSTREAM CG30058 & 2 others
2R	9096663	2R_9096663_SNP [dm3] 2R_13209158_SNP [dm6]	C	T	1.874e^-4	0.818	NON_SYNONYMOUS_CODING FLASH DOWNSTREAM CG30058 & 2 others
3L	1008713	3L_1008713_SNP [dm3] 3L_1008713_SNP [dm6]	T	A	1.887e^-4	0.818	UPSTREAM trio INTRON trio
3R	14194794	3R_14194794_SNP [dm3] 3R_18369072_SNP [dm6]	T	C	1.888e^-4	0.818	UTR_3_PRIME gl INTRON gl
3L	12816158	3L_12816158_SNP [dm3] 3L_12823058_SNP [dm6]	C	T	1.889e^-4	0.818	SYNONYMOUS_CODING CG42588
2R	9326594	2R_9326594_SNP [dm3] 2R_13439089_SNP [dm6]	T	A	1.918e^-4	0.818	UPSTREAM CG42321 DOWNSTREAM cnn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
2L	13963781	2L_13963781_SNP [dm3] 2L_13963781_SNP [dm6]	A	C	1.923e^-4	0.818	DOWNSTREAM NimA INTRON NimB1
2L	11829267	2L_11829267_SNP [dm3] 2L_11829267_SNP [dm6]	T	A	1.930e^-4	0.818	UTR_5_PRIME esc INTRON Pde1c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11922753	3L_11922753_SNP [dm3] 3L_11929653_SNP [dm6]	C	T	1.937e^-4	0.818	INTRON CG44837 & 1 other
3R	24672410	3R_24672410_SNP [dm3] 3R_28846688_SNP [dm6]	C	T	1.946e^-4	0.818	INTRON spg	TF binding site BDTNP1_TFBS_dl
2R	12575850	2R_12575850_SNP [dm3] 2R_16688345_SNP [dm6]	T	C	1.948e^-4	0.818	INTRON CG30463
2L	3235781	2L_3235781_SNP [dm3] 2L_3235781_SNP [dm6]	C	A	1.963e^-4	0.818	INTERGENIC
X	12884460	X_12884460_DEL [dm3] X_12990427_DEL [dm6]	TT	T	1.969e^-4	0.818	INTRON rad
3R	21295500	3R_21295500_SNP [dm3] 3R_25469778_SNP [dm6]	G	A	1.972e^-4	0.818	INTRON Fur1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	9326413	2R_9326413_SNP [dm3] 2R_13438908_SNP [dm6]	C	A	1.978e^-4	0.818	UTR_5_PRIME CG42321 DOWNSTREAM tRNA:CR30509 & 1 other INTRON CG42321	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	10826352	X_10826352_SNP [dm3] X_10932319_SNP [dm6]	C	T	1.980e^-4	0.818	INTRON Myo10A	TF binding site BDTNP1_TFBS_dl
2L	16926405	2L_16926405_SNP [dm3] 2L_16926405_SNP [dm6]	A	G	1.982e^-4	0.818	INTERGENIC
3R	22123601	3R_22123601_SNP [dm3] 3R_26297879_SNP [dm6]	A	G	1.985e^-4	0.818	INTERGENIC	TF binding site mE1_TFBS_cad
3R	22420091	3R_22420091_SNP [dm3] 3R_26594369_SNP [dm6]	T	C	1.989e^-4	0.818	INTRON scrib
3L	18646231	3L_18646231_SNP [dm3] 3L_18653131_SNP [dm6]	C	T	1.993e^-4	0.818	INTRON MYPT-75D
2L	1373918	2L_1373918_SNP [dm3] 2L_1373918_SNP [dm6]	C	T	1.994e^-4	0.818	INTERGENIC
X	8547286	X_8547286_SNP [dm3] X_8653253_SNP [dm6]	G	T	1.996e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8799219	3L_8799219_SNP [dm3] 3L_8806119_SNP [dm6]	T	G	2.001e^-4	0.818	SYNONYMOUS_CODING CG13312 DOWNSTREAM CG34427	TF binding site mE1_TFBS_chinmo
2R	14591777	2R_14591777_SNP [dm3] 2R_18704272_SNP [dm6]	C	T	2.001e^-4	0.818	NON_SYNONYMOUS_CODING Sik3	TF binding site mE1_TFBS_cad
X	4216307	X_4216307_SNP [dm3] X_4322274_SNP [dm6]	T	A	2.006e^-4	0.818	UPSTREAM norpA & 1 other DOWNSTREAM CG2982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2R	13360524	2R_13360524_SNP [dm3] 2R_17473019_SNP [dm6]	T	A	2.010e^-4	0.818	INTRON qkr54B
X	9636452	X_9636452_SNP [dm3] X_9742419_SNP [dm6]	T	C	2.019e^-4	0.818	INTRON Sp1
2L	15469662	2L_15469662_SNP [dm3] 2L_15469662_SNP [dm6]	A	T	2.019e^-4	0.818	UPSTREAM CR45353 INTERGENIC
3R	12894385	3R_12894385_SNP [dm3] 3R_17068663_SNP [dm6]	A	C	2.020e^-4	0.818	NON_SYNONYMOUS_CODING Dad	TF binding site mE1_TFBS_sens
3R	10811113	3R_10811113_SNP [dm3] 3R_14985391_SNP [dm6]	G	A	2.024e^-4	0.818	INTERGENIC
2L	11762105	2L_11762105_DEL [dm3] 2L_11762105_DEL [dm6]	AAAA	A	2.028e^-4	0.818	INTERGENIC
2L	7207197	2L_7207197_SNP [dm3] 2L_7207197_SNP [dm6]	A	G	2.033e^-4	0.818	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784	TF binding site mE1_TFBS_sens
3R	497785	3R_497785_SNP [dm3] 3R_4672063_SNP [dm6]	T	C	2.047e^-4	0.818	INTRON CG43427
2L	11848440	2L_11848440_SNP [dm3] 2L_11848440_SNP [dm6]	T	A	2.051e^-4	0.818	INTRON Pde1c & 1 other	TF binding site mE1_TFBS_HSA
2L	14277924	2L_14277924_SNP [dm3] 2L_14277924_SNP [dm6]	A	T	2.051e^-4	0.818	UTR_3_PRIME CG32971 INTRON wb
2L	15469667	2L_15469667_SNP [dm3] 2L_15469667_SNP [dm6]	T	G	2.059e^-4	0.818	UPSTREAM CR45353 INTERGENIC
3L	13012147	3L_13012147_SNP [dm3] 3L_13019047_SNP [dm6]	C	T	2.062e^-4	0.818	SYNONYMOUS_CODING ste14 DOWNSTREAM AdenoK EXON CR45445
X	5251270	X_5251270_SNP [dm3] X_5357237_SNP [dm6]	A	G	2.067e^-4	0.818	INTRON SK
2L	11401932	2L_11401932_SNP [dm3] 2L_11401932_SNP [dm6]	T	G	2.087e^-4	0.818	INTERGENIC	regulatory region REDfly_CRMs
2R	21072312	2R_21072312_SNP [dm3] 2R_25184789_SNP [dm6]	T	A	2.095e^-4	0.818	SYNONYMOUS_CODING CG9380 DOWNSTREAM CG9380
2R	11576600	2R_11576600_SNP [dm3] 2R_15689095_SNP [dm6]	G	T	2.097e^-4	0.818	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	4233806	X_4233806_SNP [dm3] X_4339773_SNP [dm6]	A	G	2.098e^-4	0.818	INTRON norpA
2R	17274994	2R_17274994_SNP [dm3] 2R_21387489_SNP [dm6]	A	T	2.107e^-4	0.818	INTRON Acox57D-p	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11762126	2L_11762126_SNP [dm3] 2L_11762126_SNP [dm6]	A	C	2.110e^-4	0.818	INTERGENIC
3L	7294320	3L_7294320_SNP [dm3] 3L_7301220_SNP [dm6]	G	A	2.110e^-4	0.818	INTRON unc-13-4A
3R	11249141	3R_11249141_SNP [dm3] 3R_15423419_SNP [dm6]	G	A	2.117e^-4	0.818	NON_SYNONYMOUS_CODING CG6118	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11621955	3L_11621955_DEL [dm3] 3L_11628855_DEL [dm6]	ATTA	G	2.121e^-4	0.818	UPSTREAM mir-3642 INTRON CG18815
3L	11621966	3L_11621966_DEL [dm3] 3L_11628866_DEL [dm6]	GCAAACAAAACTTACCT...	G	2.121e^-4	0.818	UPSTREAM mir-3642 INTRON CG18815
3R	10805220	3R_10805220_SNP [dm3] 3R_14979498_SNP [dm6]	T	G	2.123e^-4	0.818	INTERGENIC
2L	19303378	2L_19303378_SNP [dm3] 2L_19303378_SNP [dm6]	T	A	2.123e^-4	0.818	INTERGENIC	TF binding site mE1_TFBS_cad
2R	9342831	2R_9342831_SNP [dm3] 2R_13455326_SNP [dm6]	T	C	2.133e^-4	0.818	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7620847	X_7620847_SNP [dm3] X_7726814_SNP [dm6]	T	C	2.133e^-4	0.818	SYNONYMOUS_CODING NELF-B DOWNSTREAM Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5534162	X_5534162_SNP [dm3] X_5640129_SNP [dm6]	C	A	2.139e^-4	0.818	INTRON CG42492
3L	1086767	3L_1086767_SNP [dm3] 3L_1086767_SNP [dm6]	A	G	2.140e^-4	0.818	INTRON bab1
3L	3998075	3L_3998075_SNP [dm3] 3L_3998075_SNP [dm6]	C	T	2.141e^-4	0.818	INTERGENIC	TF binding site mE1_TFBS_HSA
X	19162122	X_19162122_SNP [dm3] X_19268089_SNP [dm6]	A	T	2.144e^-4	0.818	INTRON Vav & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	11814840	2L_11814840_SNP [dm3] 2L_11814840_SNP [dm6]	G	C	2.148e^-4	0.818	UTR_3_PRIME Pde1c DOWNSTREAM Pde1c
3R	22612276	3R_22612276_DEL [dm3] 3R_26786554_DEL [dm6]	TT	T	2.162e^-4	0.818	DOWNSTREAM CG42790 INTERGENIC
3R	4382182	3R_4382182_SNP [dm3] 3R_8556460_SNP [dm6]	G	A	2.169e^-4	0.818	INTERGENIC
3R	10659828	3R_10659828_SNP [dm3] 3R_14834106_SNP [dm6]	C	G	2.169e^-4	0.818	INTRON btsz
2R	6797422	2R_6797422_SNP [dm3] 2R_10909917_SNP [dm6]	A	T	2.180e^-4	0.818	UPSTREAM Obp47a INTERGENIC
2L	10780942	2L_10780942_SNP [dm3] 2L_10780942_SNP [dm6]	T	A	2.182e^-4	0.818	INTRON CG31869
2L	6986857	2L_6986857_SNP [dm3] 2L_6986857_SNP [dm6]	A	G	2.187e^-4	0.818	DOWNSTREAM CR44326 INTRON uif
X	5251276	X_5251276_SNP [dm3] X_5357243_SNP [dm6]	G	A	2.189e^-4	0.818	INTRON SK
3L	2145213	3L_2145213_SNP [dm3] 3L_2145213_SNP [dm6]	A	T	2.189e^-4	0.818	INTRON zormin
3L	2145216	3L_2145216_SNP [dm3] 3L_2145216_SNP [dm6]	C	G	2.189e^-4	0.818	INTRON zormin
3R	17509205	3R_17509205_SNP [dm3] 3R_21683483_SNP [dm6]	A	T	2.198e^-4	0.818	INTRON CG31176	TF binding site mE1_TFBS_cad
X	7424965	X_7424965_SNP [dm3] X_7530932_SNP [dm6]	G	A	2.204e^-4	0.818	INTRON CG32719
3L	21960423	3L_21960423_SNP [dm3] 3L_21967323_SNP [dm6]	C	T	2.206e^-4	0.818	SYNONYMOUS_CODING CS-2	TF binding site mE1_TFBS_cad
2L	14951290	2L_14951290_SNP [dm3] 2L_14951290_SNP [dm6]	G	A	2.208e^-4	0.818	INTRON CG42313
2R	9340346	2R_9340346_SNP [dm3] 2R_13452841_SNP [dm6]	G	A	2.214e^-4	0.818	SYNONYMOUS_CODING cbs DOWNSTREAM arr
3L	10960679	3L_10960679_DEL [dm3] 3L_10967579_DEL [dm6]	ACGCCATGGTCATGGCATGA...	A	2.219e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
X	21103882	X_21103882_SNP [dm3] X_21232855_SNP [dm6]	C	T	2.226e^-4	0.818	DOWNSTREAM tRNA:R:19F INTRON CG32521	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4588343	X_4588343_SNP [dm3] X_4694310_SNP [dm6]	C	A	2.228e^-4	0.818	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	7898682	X_7898682_SNP [dm3] X_8004649_SNP [dm6]	C	A	2.232e^-4	0.818	INTRON Tbh
3L	8615343	3L_8615343_SNP [dm3] 3L_8622243_SNP [dm6]	G	A	2.235e^-4	0.818	UTR_3_PRIME GAPsec DOWNSTREAM S-Lap2	TF binding site mE1_TFBS_HSA
2L	7712865	2L_7712865_SNP [dm3] 2L_7712865_SNP [dm6]	G	A	2.238e^-4	0.818	INTRON Ntl
2L	2705646	2L_2705646_SNP [dm3] 2L_2705646_SNP [dm6]	C	T	2.242e^-4	0.818	INTRON CG31690
X	20944249	X_20944249_SNP [dm3] X_21073222_SNP [dm6]	G	T	2.247e^-4	0.818	INTRON bves
3L	8151160	3L_8151160_DEL [dm3] 3L_8158060_DEL [dm6]	AT	A	2.258e^-4	0.818	INTRON CG42445
2R	20109843	2R_20109843_SNP [dm3] 2R_24222320_SNP [dm6]	T	C	2.259e^-4	0.818	INTRON CG30419
3L	17255602	3L_17255602_SNP [dm3] 3L_17262502_SNP [dm6]	G	T	2.262e^-4	0.818	INTRON CR43870
2R	19311656	2R_19311656_SNP [dm3] 2R_23424133_SNP [dm6]	C	T	2.267e^-4	0.818	INTRON CG9815
X	4912434	X_4912434_SNP [dm3] X_5018401_SNP [dm6]	T	C	2.270e^-4	0.818	INTRON CR44833	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	16767195	2L_16767195_INS [dm3] 2L_16767195_INS [dm6]	A	AA	2.272e^-4	0.818	UPSTREAM Mhc INTRON Mhc	regulatory region REDfly_CRMs
2R	14523601	2R_14523601_SNP [dm3] 2R_18636096_SNP [dm6]	C	T	2.284e^-4	0.818	INTRON CG30122
2L	1102872	2L_1102872_SNP [dm3] 2L_1102872_SNP [dm6]	A	T	2.286e^-4	0.818	UPSTREAM CG4629 DOWNSTREAM mtRNApol INTERGENIC
3L	5463069	3L_5463069_SNP [dm3] 3L_5469969_SNP [dm6]	C	T	2.294e^-4	0.818	INTERGENIC
3R	20487082	3R_20487082_SNP [dm3] 3R_24661360_SNP [dm6]	T	C	2.300e^-4	0.818	SYNONYMOUS_CODING Ppox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2915941	3L_2915941_SNP [dm3] 3L_2915941_SNP [dm6]	G	A	2.301e^-4	0.818	SYNONYMOUS_CODING CG9970 INTRON Shab	TF binding site mE1_TFBS_chinmo
3L	9352201	3L_9352201_SNP [dm3] 3L_9359101_SNP [dm6]	A	G	2.304e^-4	0.818	UTR_5_PRIME CG32039 UPSTREAM UGP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3L	8885260	3L_8885260_SNP [dm3] 3L_8892160_SNP [dm6]	C	T	2.308e^-4	0.818	SYNONYMOUS_CODING Mcm7 DOWNSTREAM dally	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	16575965	3L_16575965_SNP [dm3] 3L_16582865_SNP [dm6]	G	A	2.309e^-4	0.818	UPSTREAM Rpn12 DOWNSTREAM CR43727 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2L	19387693	2L_19387693_SNP [dm3] 2L_19387693_SNP [dm6]	T	A	2.311e^-4	0.818	NON_SYNONYMOUS_CODING CG17549
3L	6315773	3L_6315773_SNP [dm3] 3L_6322673_SNP [dm6]	A	C	2.314e^-4	0.818	DOWNSTREAM Or65a INTERGENIC
X	8417072	X_8417072_DEL [dm3] X_8523039_DEL [dm6]	GTAATATCTAT...	G	2.317e^-4	0.818	INTRON Nrg
3R	11465759	3R_11465759_INS [dm3] 3R_15640037_INS [dm6]	C	CCCGATC	2.321e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	22703858	3R_22703858_SNP [dm3] 3R_26878136_SNP [dm6]	C	G	2.322e^-4	0.818	INTRON CG5500 & 1 other	TF binding site mE1_TFBS_HSA
2L	11829257	2L_11829257_SNP [dm3] 2L_11829257_SNP [dm6]	T	C	2.324e^-4	0.818	UTR_5_PRIME esc INTRON Pde1c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21295494	3R_21295494_INS [dm3] 3R_25469772_INS [dm6]	T	AA	2.329e^-4	0.818	INTRON Fur1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	8370131	2L_8370131_SNP [dm3] 2L_8370131_SNP [dm6]	T	A	2.331e^-4	0.818	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
2R	9096677	2R_9096677_SNP [dm3] 2R_13209172_SNP [dm6]	A	T	2.340e^-4	0.818	NON_SYNONYMOUS_CODING FLASH DOWNSTREAM CG30058 & 2 others
2L	1878878	2L_1878878_SNP [dm3] 2L_1878878_SNP [dm6]	C	A	2.352e^-4	0.818	INTRON CG31663
2L	19387481	2L_19387481_SNP [dm3] 2L_19387481_SNP [dm6]	A	T	2.353e^-4	0.818	INTRON CG17549
2L	3940776	2L_3940776_SNP [dm3] 2L_3940776_SNP [dm6]	G	A	2.361e^-4	0.818	INTRON fred
3R	12955572	3R_12955572_SNP [dm3] 3R_17129850_SNP [dm6]	A	G	2.369e^-4	0.818	SYNONYMOUS_CODING CG17475 DOWNSTREAM CG31265	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3940810	2L_3940810_SNP [dm3] 2L_3940810_SNP [dm6]	G	C	2.370e^-4	0.818	INTRON fred
2R	14352461	2R_14352461_SNP [dm3] 2R_18464956_SNP [dm6]	A	G	2.374e^-4	0.818	SYNONYMOUS_CODING CG30116
3R	21295513	3R_21295513_SNP [dm3] 3R_25469791_SNP [dm6]	C	T	2.375e^-4	0.818	INTRON Fur1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	3521288	3L_3521288_SNP [dm3] 3L_3521288_SNP [dm6]	C	T	2.375e^-4	0.818	INTRON Eip63E
2R	16066976	2R_16066976_SNP [dm3] 2R_20179471_SNP [dm6]	G	T	2.380e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	10545599	X_10545599_DEL [dm3] X_10651566_DEL [dm6]	AACTTTTC	A	2.382e^-4	0.818	INTRON X11Lbeta
3R	17000926	3R_17000926_SNP [dm3] 3R_21175204_SNP [dm6]	C	T	2.383e^-4	0.818	SYNONYMOUS_CODING SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11620990	3L_11620990_SNP [dm3] 3L_11627890_SNP [dm6]	G	C	2.392e^-4	0.818	UPSTREAM CG18815 DOWNSTREAM PCID2 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	19190865	3R_19190865_SNP [dm3] 3R_23365143_SNP [dm6]	C	T	2.412e^-4	0.818	INTERGENIC
3L	3911884	3L_3911884_SNP [dm3] 3L_3911884_SNP [dm6]	T	A	2.415e^-4	0.818	UTR_3_PRIME Eip63F-1
2R	10918110	2R_10918110_SNP [dm3] 2R_15030605_SNP [dm6]	T	C	2.422e^-4	0.818	INTRON hbs	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad
3L	16551111	3L_16551111_SNP [dm3] 3L_16558011_SNP [dm6]	T	A	2.425e^-4	0.818	DOWNSTREAM CG4229 INTERGENIC	TF binding site mE1_TFBS_cad
2R	9337941	2R_9337941_SNP [dm3] 2R_13450436_SNP [dm6]	C	T	2.425e^-4	0.818	UTR_5_PRIME cnn UPSTREAM cbs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	14687303	3L_14687303_DEL [dm3] 3L_14694203_DEL [dm6]	GG	G	2.425e^-4	0.818	INTRON ome
X	20114987	X_20114987_SNP [dm3] X_20243913_SNP [dm6]	A	T	2.431e^-4	0.818	UPSTREAM Peritrophin-A DOWNSTREAM obst-A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
X	7621051	X_7621051_SNP [dm3] X_7727018_SNP [dm6]	G	A	2.442e^-4	0.818	SYNONYMOUS_CODING NELF-B	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	8018192	X_8018192_SNP [dm3] X_8124159_SNP [dm6]	T	C	2.448e^-4	0.818	INTRON cyr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	516240	2L_516240_SNP [dm3] 2L_516240_SNP [dm6]	C	T	2.449e^-4	0.818	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	17256795	2L_17256795_SNP [dm3] 2L_17256795_SNP [dm6]	A	T	2.453e^-4	0.818	INTRON beat-IIIc
2R	12457966	2R_12457966_SNP [dm3] 2R_16570461_SNP [dm6]	T	A	2.457e^-4	0.818	DOWNSTREAM CG4945 INTRON RpS15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14178201	3R_14178201_SNP [dm3] 3R_18352479_SNP [dm6]	C	T	2.477e^-4	0.818	INTRON CG15803
3L	18590781	3L_18590781_SNP [dm3] 3L_18597681_SNP [dm6]	G	C	2.479e^-4	0.818	UPSTREAM CR45390 DOWNSTREAM CR45389 INTERGENIC
3L	18332284	3L_18332284_SNP [dm3] 3L_18339184_SNP [dm6]	A	C	2.480e^-4	0.818	INTERGENIC	TF binding site mE1_TFBS_cad
3L	12792346	3L_12792346_SNP [dm3] 3L_12799246_SNP [dm6]	G	C	2.494e^-4	0.818	INTRON Atg1
3L	941253	3L_941253_SNP [dm3] 3L_941253_SNP [dm6]	A	C	2.495e^-4	0.818	INTRON Glut1
X	19517064	X_19517064_SNP [dm3] X_19623031_SNP [dm6]	G	A	2.496e^-4	0.818	UTR_5_PRIME NAA20 UPSTREAM MKP-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18253095	X_18253095_SNP [dm3] X_18359062_SNP [dm6]	T	C	2.527e^-4	0.818	SPLICE_SITE_REGION CG6106 INTRON CG6106	TF binding site mE1_TFBS_HSA
3L	4407957	3L_4407957_SNP [dm3] 3L_4407957_SNP [dm6]	C	T	2.531e^-4	0.818	INTRON DOR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18253390	X_18253390_SNP [dm3] X_18359357_SNP [dm6]	T	C	2.538e^-4	0.818	SYNONYMOUS_CODING CG6106
X	4461644	X_4461644_SNP [dm3] X_4567611_SNP [dm6]	T	C	2.538e^-4	0.818	INTRON CR32773
2L	4136146	2L_4136146_SNP [dm3] 2L_4136146_SNP [dm6]	A	T	2.542e^-4	0.818	INTERGENIC
2L	11849848	2L_11849848_SNP [dm3] 2L_11849848_SNP [dm6]	A	T	2.549e^-4	0.818	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
3L	18356364	3L_18356364_SNP [dm3] 3L_18363264_SNP [dm6]	C	A	2.554e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
X	14822683	X_14822683_SNP [dm3] X_14928650_SNP [dm6]	C	A	2.564e^-4	0.818	SYNONYMOUS_CODING CG32591 INTRON Flo2
X	8547258	X_8547258_SNP [dm3] X_8653225_SNP [dm6]	C	T	2.564e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	11322549	3R_11322549_SNP [dm3] 3R_15496827_SNP [dm6]	T	C	2.564e^-4	0.818	INTERGENIC
2L	2052823	2L_2052823_SNP [dm3] 2L_2052823_SNP [dm6]	G	C	2.580e^-4	0.818	INTERGENIC
2L	9664935	2L_9664935_SNP [dm3] 2L_9664935_SNP [dm6]	A	G	2.581e^-4	0.818	INTERGENIC
2R	11718340	2R_11718340_SNP [dm3] 2R_15830835_SNP [dm6]	C	T	2.599e^-4	0.818	INTRON tun & 1 other	regulatory region REDfly_CRMs
3L	8208220	3L_8208220_SNP [dm3] 3L_8215120_SNP [dm6]	A	G	2.599e^-4	0.818	UPSTREAM CG8012 INTERGENIC
3L	5167431	3L_5167431_INS [dm3] 3L_5174331_INS [dm6]	C	CCC	2.600e^-4	0.818	INTRON shep
3R	19623567	3R_19623567_SNP [dm3] 3R_23797845_SNP [dm6]	C	T	2.602e^-4	0.818	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	24440726	3R_24440726_SNP [dm3] 3R_28615004_SNP [dm6]	T	G	2.604e^-4	0.818	SYNONYMOUS_CODING CG10011	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10434996	3R_10434996_SNP [dm3] 3R_14609274_SNP [dm6]	A	G	2.611e^-4	0.818	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	4848178	2L_4848178_SNP [dm3] 2L_4848178_SNP [dm6]	T	G	2.617e^-4	0.818	SYNONYMOUS_CODING CG11927 UPSTREAM mxt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_sens
2L	17251337	2L_17251337_SNP [dm3] 2L_17251337_SNP [dm6]	G	A	2.624e^-4	0.818	INTRON beat-IIIc
3L	5147005	3L_5147005_SNP [dm3] 3L_5153905_SNP [dm6]	T	C	2.629e^-4	0.818	SYNONYMOUS_CODING Srp54k	TF binding site mE1_TFBS_sens
X	7622623	X_7622623_SNP [dm3] X_7728590_SNP [dm6]	G	A	2.629e^-4	0.818	UPSTREAM CG12155 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	19367828	2L_19367828_SNP [dm3] 2L_19367828_SNP [dm6]	T	G	2.630e^-4	0.818	INTERGENIC
3L	15212442	3L_15212442_SNP [dm3] 3L_15219342_SNP [dm6]	C	T	2.632e^-4	0.818	INTERGENIC
X	5534861	X_5534861_INS [dm3] X_5640828_INS [dm6]	A	AC	2.640e^-4	0.818	INTRON CG42492
2R	4084722	2R_4084722_SNP [dm3] 2R_8197217_SNP [dm6]	G	A	2.642e^-4	0.818	INTRON LRP1
3R	12740400	3R_12740400_SNP [dm3] 3R_16914678_SNP [dm6]	T	G	2.654e^-4	0.818	INTRON iab-8	TF binding site mE1_TFBS_cad
3R	22594686	3R_22594686_SNP [dm3] 3R_26768964_SNP [dm6]	G	C	2.655e^-4	0.818	UPSTREAM CR45563 INTERGENIC
3R	22594691	3R_22594691_SNP [dm3] 3R_26768969_SNP [dm6]	C	T	2.655e^-4	0.818	UPSTREAM CR45563 INTERGENIC
X	4557427	X_4557427_SNP [dm3] X_4663394_SNP [dm6]	G	A	2.658e^-4	0.818	INTRON CG3009
2L	17288194	2L_17288194_SNP [dm3] 2L_17288194_SNP [dm6]	C	T	2.659e^-4	0.818	DOWNSTREAM CG15140 INTERGENIC
2L	17320479	2L_17320479_DEL [dm3] 2L_17320479_DEL [dm6]	TATTGCC	T	2.666e^-4	0.818	CODON_DELETION CG45691
2L	7853113	2L_7853113_SNP [dm3] 2L_7853113_SNP [dm6]	C	G	2.673e^-4	0.818	SYNONYMOUS_CODING CG14535
2R	16388726	2R_16388726_SNP [dm3] 2R_20501221_SNP [dm6]	C	A	2.675e^-4	0.818	INTERGENIC	regulatory region REDfly_CRMs
2R	14992266	2R_14992266_SNP [dm3] 2R_19104761_SNP [dm6]	T	G	2.680e^-4	0.818	INTRON 5-HT1A
3R	4710020	3R_4710020_SNP [dm3] 3R_8884298_SNP [dm6]	G	C	2.686e^-4	0.818	INTRON pyd	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	19653894	2R_19653894_SNP [dm3] 2R_23766371_SNP [dm6]	G	A	2.689e^-4	0.818	INTRON CG9850
X	8178751	X_8178751_SNP [dm3] X_8284718_SNP [dm6]	T	G	2.693e^-4	0.818	INTRON nAChRalpha3
3R	19126952	3R_19126952_SNP [dm3] 3R_23301230_SNP [dm6]	G	A	2.699e^-4	0.818	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14371986	2L_14371986_SNP [dm3] 2L_14371986_SNP [dm6]	C	A	2.701e^-4	0.818	INTERGENIC
2L	659098	2L_659098_DEL [dm3] 2L_659098_DEL [dm6]	TATGTACGT	T	2.705e^-4	0.818	INTRON ds	TF binding site mE1_TFBS_inv
X	8547230	X_8547230_SNP [dm3] X_8653197_SNP [dm6]	T	A	2.708e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9665231	2L_9665231_SNP [dm3] 2L_9665231_SNP [dm6]	C	G	2.713e^-4	0.818	INTERGENIC
2L	19405918	2L_19405918_DEL [dm3] 2L_19405918_DEL [dm6]	CC	C	2.717e^-4	0.818	INTRON Pax	TF binding site mE1_TFBS_Kr
3R	15254305	3R_15254305_SNP [dm3] 3R_19428583_SNP [dm6]	C	T	2.721e^-4	0.818	INTRON CG31221
X	4234913	X_4234913_SNP [dm3] X_4340880_SNP [dm6]	G	T	2.722e^-4	0.818	INTRON norpA
2L	16931986	2L_16931986_SNP [dm3] 2L_16931986_SNP [dm6]	T	A	2.728e^-4	0.818	INTERGENIC
2L	17320994	2L_17320994_SNP [dm3] 2L_17320994_SNP [dm6]	G	T	2.729e^-4	0.818	UPSTREAM CG45691 INTERGENIC
X	10857720	X_10857720_SNP [dm3] X_10963687_SNP [dm6]	A	T	2.730e^-4	0.818	UTR_3_PRIME Myo10A DOWNSTREAM C901
3R	22165435	3R_22165435_DEL [dm3] 3R_26339713_DEL [dm6]	GCGGCGGTAGTGG...	G	2.731e^-4	0.818	INTRON CG33970
3R	22165449	3R_22165449_DEL [dm3] 3R_26339727_DEL [dm6]	AGTC	A	2.731e^-4	0.818	INTRON CG33970
3L	13588422	3L_13588422_SNP [dm3] 3L_13595322_SNP [dm6]	C	T	2.739e^-4	0.818	INTRON bru-3
3L	18605652	3L_18605652_SNP [dm3] 3L_18612552_SNP [dm6]	A	T	2.739e^-4	0.818	DOWNSTREAM CG32201 INTRON CG4174 & 2 others
2L	17990404	2L_17990404_SNP [dm3] 2L_17990404_SNP [dm6]	A	G	2.741e^-4	0.818	UPSTREAM Prosbeta5R2 INTERGENIC
2L	4144530	2L_4144530_SNP [dm3] 2L_4144530_SNP [dm6]	G	A	2.746e^-4	0.818	INTERGENIC
2L	4781739	2L_4781739_SNP [dm3] 2L_4781739_SNP [dm6]	C	T	2.749e^-4	0.818	INTRON CG15630
3L	18260256	3L_18260256_SNP [dm3] 3L_18267156_SNP [dm6]	G	A	2.749e^-4	0.818	INTERGENIC
2R	15174128	2R_15174128_SNP [dm3] 2R_19286623_SNP [dm6]	T	C	2.760e^-4	0.818	UTR_5_PRIME CG10474	TF binding site mE1_TFBS_cad
2L	2797905	2L_2797905_SNP [dm3] 2L_2797905_SNP [dm6]	A	C	2.762e^-4	0.818	INTRON Syt1 EXON CR43821	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	14120116	3R_14120116_SNP [dm3] 3R_18294394_SNP [dm6]	G	T	2.763e^-4	0.818	INTRON l_3_05822
X	11087208	X_11087208_SNP [dm3] X_11193175_SNP [dm6]	G	A	2.766e^-4	0.818	EXON CR44765
X	12956239	X_12956239_SNP [dm3] X_13062206_SNP [dm6]	T	G	2.777e^-4	0.818	DOWNSTREAM mir-971 INTRON rad
2L	4816080	2L_4816080_SNP [dm3] 2L_4816080_SNP [dm6]	A	C	2.779e^-4	0.818	SYNONYMOUS_CODING CG3225 DOWNSTREAM CG15629	TF binding site mE1_TFBS_inv
3L	22547039	3L_22547039_SNP [dm3] 3L_22553939_SNP [dm6]	A	G	2.785e^-4	0.818	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	8936432	3L_8936432_SNP [dm3] 3L_8943332_SNP [dm6]	A	G	2.788e^-4	0.818	SYNONYMOUS_CODING orb2 INTRON CG43783	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	16787708	2L_16787708_SNP [dm3] 2L_16787708_SNP [dm6]	T	A	2.791e^-4	0.818	INTRON Mhc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18260259	3L_18260259_DEL [dm3] 3L_18267159_DEL [dm6]	AAT	A	2.804e^-4	0.818	INTERGENIC
3L	18260263	3L_18260263_MNP [dm3] 3L_18267163_MNP [dm6]	TTTG	AAAC	2.804e^-4	0.818	INTERGENIC
3R	27144518	3R_27144518_SNP [dm3] 3R_31318796_SNP [dm6]	C	T	2.807e^-4	0.818	INTRON CG34347
X	17029297	X_17029297_SNP [dm3] X_17135264_SNP [dm6]	G	A	2.819e^-4	0.818	UTR_3_PRIME CG5004 DOWNSTREAM mei-218
X	9023397	X_9023397_SNP [dm3] X_9129364_SNP [dm6]	A	C	2.827e^-4	0.818	INTRON fend	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2076299	2L_2076299_SNP [dm3] 2L_2076299_SNP [dm6]	A	C	2.834e^-4	0.818	INTRON dpr3
3L	7311307	3L_7311307_SNP [dm3] 3L_7318207_SNP [dm6]	A	G	2.835e^-4	0.818	INTERGENIC
X	17672231	X_17672231_SNP [dm3] X_17778198_SNP [dm6]	T	C	2.838e^-4	0.818	UTR_3_PRIME unc-4
3L	4435095	3L_4435095_SNP [dm3] 3L_4435095_SNP [dm6]	T	C	2.843e^-4	0.818	SPLICE_SITE_REGION nAChRbeta1 INTRON nAChRbeta1	TF binding site mE1_TFBS_cad
3L	13977165	3L_13977165_SNP [dm3] 3L_13984065_SNP [dm6]	C	G	2.846e^-4	0.818	INTRON CG17364	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22621822	3R_22621822_SNP [dm3] 3R_26796100_SNP [dm6]	T	A	2.848e^-4	0.818	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4390114	2L_4390114_SNP [dm3] 2L_4390114_SNP [dm6]	G	A	2.855e^-4	0.818	INTRON Tps1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11020078	2L_11020078_SNP [dm3] 2L_11020078_SNP [dm6]	C	T	2.859e^-4	0.818	INTRON Samuel
3R	15747414	3R_15747414_SNP [dm3] 3R_19921692_SNP [dm6]	T	A	2.867e^-4	0.818	UPSTREAM CR43282 DOWNSTREAM CG4462 INTERGENIC
2L	14700498	2L_14700498_SNP [dm3] 2L_14700498_SNP [dm6]	A	G	2.869e^-4	0.818	INTERGENIC
X	6477081	X_6477081_SNP [dm3] X_6583048_SNP [dm6]	G	T	2.871e^-4	0.818	SYNONYMOUS_CODING CG34417 INTRON CG34417
2L	8448106	2L_8448106_SNP [dm3] 2L_8448106_SNP [dm6]	G	A	2.871e^-4	0.818	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8151147	3L_8151147_SNP [dm3] 3L_8158047_SNP [dm6]	T	C	2.872e^-4	0.818	INTRON CG42445
X	21091737	X_21091737_SNP [dm3] X_21220710_SNP [dm6]	T	A	2.894e^-4	0.818	INTRON CG32521	TF binding site mE1_TFBS_chinmo
X	18987640	X_18987640_SNP [dm3] X_19093607_SNP [dm6]	G	A	2.897e^-4	0.818	INTERGENIC
3L	7897041	3L_7897041_SNP [dm3] 3L_7903941_SNP [dm6]	A	G	2.903e^-4	0.818	UPSTREAM pbl INTRON pbl	TF binding site mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
2R	17930846	2R_17930846_SNP [dm3] 2R_22043341_SNP [dm6]	C	A	2.905e^-4	0.818	UPSTREAM PpD5 INTERGENIC
3R	4949881	3R_4949881_SNP [dm3] 3R_9124159_SNP [dm6]	T	G	2.906e^-4	0.818	INTRON pum
2R	16327272	2R_16327272_SNP [dm3] 2R_20439767_SNP [dm6]	G	T	2.911e^-4	0.818	INTRON CG12484
3L	17301750	3L_17301750_SNP [dm3] 3L_17308650_SNP [dm6]	G	A	2.916e^-4	0.818	INTERGENIC
3L	14160092	3L_14160092_SNP [dm3] 3L_14166992_SNP [dm6]	C	T	2.926e^-4	0.818	INTERGENIC	regulatory region REDfly_CRMs
X	6727328	X_6727328_SNP [dm3] X_6833295_SNP [dm6]	T	A	2.927e^-4	0.818	UPSTREAM CG12796 INTRON nonC
2R	18101031	2R_18101031_SNP [dm3] 2R_22213526_SNP [dm6]	G	A	2.937e^-4	0.818	DOWNSTREAM CG11291 INTRON ari-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18104794	2R_18104794_SNP [dm3] 2R_22217289_SNP [dm6]	G	A	2.937e^-4	0.818	UTR_3_PRIME CG30278 DOWNSTREAM CG30278 & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	9320808	2R_9320808_SNP [dm3] 2R_13433303_SNP [dm6]	C	G	2.939e^-4	0.818	NON_SYNONYMOUS_CODING CG30065 UPSTREAM Ser8 DOWNSTREAM tRNA:L3:49Fb INTRON CG42321
2L	14700490	2L_14700490_INS [dm3] 2L_14700490_INS [dm6]	A	TG	2.941e^-4	0.818	INTERGENIC
2L	13997004	2L_13997004_SNP [dm3] 2L_13997004_SNP [dm6]	G	C	2.945e^-4	0.818	INTRON rk
3L	10741942	3L_10741942_SNP [dm3] 3L_10748842_SNP [dm6]	A	G	2.948e^-4	0.818	INTERGENIC
3R	14748514	3R_14748514_INS [dm3] 3R_18922792_INS [dm6]	T	TG	2.953e^-4	0.818	INTRON Xrp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_Trl
2R	8636744	2R_8636744_SNP [dm3] 2R_12749239_SNP [dm6]	T	G	2.974e^-4	0.818	SYNONYMOUS_CODING CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18893923	3R_18893923_DEL [dm3] 3R_23068201_DEL [dm6]	CCA	C	2.989e^-4	0.818	UPSTREAM CG17111 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4216621	X_4216621_SNP [dm3] X_4322588_SNP [dm6]	C	T	2.992e^-4	0.818	UPSTREAM norpA & 1 other DOWNSTREAM CG2982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3R	25220786	3R_25220786_SNP [dm3] 3R_29395064_SNP [dm6]	G	A	2.996e^-4	0.818	INTRON Ptp99A
2R	18704659	2R_18704659_SNP [dm3] 2R_22817154_SNP [dm6]	G	T	2.996e^-4	0.818	UPSTREAM CG30271 INTRON CG30271
2L	17257068	2L_17257068_SNP [dm3] 2L_17257068_SNP [dm6]	A	G	2.999e^-4	0.818	INTRON beat-IIIc
3R	24413164	3R_24413164_SNP [dm3] 3R_28587442_SNP [dm6]	C	T	3.009e^-4	0.818	EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	19923314	3R_19923314_INS [dm3] 3R_24097592_INS [dm6]	A	AT	3.016e^-4	0.818	INTRON 4EHP
3L	15185134	3L_15185134_DEL [dm3] 3L_15192034_DEL [dm6]	AA	A	3.017e^-4	0.818	INTERGENIC	TF binding site mE1_TFBS_cad
2L	14067701	2L_14067701_SNP [dm3] 2L_14067701_SNP [dm6]	A	G	3.020e^-4	0.818	INTRON nAChRalpha5
2R	9320267	2R_9320267_SNP [dm3] 2R_13432762_SNP [dm6]	T	C	3.021e^-4	0.818	UPSTREAM CG30065 DOWNSTREAM tRNA:I:49Fd & 1 other INTRON CG42321 EXON tRNA:L3:49Fb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	14526977	2L_14526977_SNP [dm3] 2L_14526977_SNP [dm6]	A	G	3.026e^-4	0.818	INTERGENIC
X	10887630	X_10887630_SNP [dm3] X_10993597_SNP [dm6]	T	G	3.029e^-4	0.818	INTRON CG42339
X	5251258	X_5251258_SNP [dm3] X_5357225_SNP [dm6]	A	G	3.029e^-4	0.818	INTRON SK
X	5251259	X_5251259_SNP [dm3] X_5357226_SNP [dm6]	G	A	3.029e^-4	0.818	INTRON SK
2R	19311588	2R_19311588_SNP [dm3] 2R_23424065_SNP [dm6]	C	T	3.031e^-4	0.818	INTRON CG9815
X	7616491	X_7616491_SNP [dm3] X_7722458_SNP [dm6]	C	T	3.036e^-4	0.818	SYNONYMOUS_CODING Hira	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	19385897	2L_19385897_SNP [dm3] 2L_19385897_SNP [dm6]	C	A	3.039e^-4	0.818	INTRON fon
3R	21891675	3R_21891675_SNP [dm3] 3R_26065953_SNP [dm6]	A	T	3.040e^-4	0.818	INTERGENIC
X	4216591	X_4216591_SNP [dm3] X_4322558_SNP [dm6]	T	G	3.042e^-4	0.818	UPSTREAM norpA & 1 other DOWNSTREAM CG2982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2R	9328807	2R_9328807_SNP [dm3] 2R_13441302_SNP [dm6]	G	C	3.045e^-4	0.818	SYNONYMOUS_CODING cnn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10724944	3L_10724944_SNP [dm3] 3L_10731844_SNP [dm6]	T	A	3.049e^-4	0.818	INTERGENIC
2L	16376377	2L_16376377_SNP [dm3] 2L_16376377_SNP [dm6]	G	A	3.055e^-4	0.818	INTERGENIC
3L	17578789	3L_17578789_DEL [dm3] 3L_17585689_DEL [dm6]	TT	T	3.055e^-4	0.818	INTRON Eip74EF	TF binding site mE1_TFBS_inv
3L	21809262	3L_21809262_SNP [dm3] 3L_21816162_SNP [dm6]	G	A	3.056e^-4	0.818	INTRON eg	TF binding site mE1_TFBS_cad
3R	14711367	3R_14711367_SNP [dm3] 3R_18885645_SNP [dm6]	A	G	3.062e^-4	0.818	INTERGENIC
2R	11842834	2R_11842834_SNP [dm3] 2R_15955329_SNP [dm6]	G	A	3.066e^-4	0.818	SYNONYMOUS_CODING CG8366 INTRON Strn-Mlck	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	7583192	2R_7583192_SNP [dm3] 2R_11695687_SNP [dm6]	G	T	3.081e^-4	0.818	UTR_3_PRIME CG13197 DOWNSTREAM CG13197
2L	14462736	2L_14462736_SNP [dm3] 2L_14462736_SNP [dm6]	G	T	3.082e^-4	0.818	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	18260240	3L_18260240_SNP [dm3] 3L_18267140_SNP [dm6]	A	C	3.092e^-4	0.818	INTERGENIC
3L	18647712	3L_18647712_SNP [dm3] 3L_18654612_SNP [dm6]	T	A	3.095e^-4	0.818	INTRON MYPT-75D
3L	1086705	3L_1086705_SNP [dm3] 3L_1086705_SNP [dm6]	T	C	3.099e^-4	0.818	INTRON bab1
2R	15081405	2R_15081405_SNP [dm3] 2R_19193900_SNP [dm6]	C	T	3.099e^-4	0.818	INTRON hppy
3L	20170709	3L_20170709_SNP [dm3] 3L_20177609_SNP [dm6]	C	T	3.117e^-4	0.818	INTRON CG42674	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10435086	3R_10435086_SNP [dm3] 3R_14609364_SNP [dm6]	T	G	3.117e^-4	0.818	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	12453743	2R_12453743_SNP [dm3] 2R_16566238_SNP [dm6]	T	A	3.118e^-4	0.818	UTR_5_PRIME CG4945 UPSTREAM DAT
2L	4143121	2L_4143121_SNP [dm3] 2L_4143121_SNP [dm6]	G	T	3.121e^-4	0.818	INTERGENIC
3L	1526206	3L_1526206_SNP [dm3] 3L_1526206_SNP [dm6]	T	C	3.133e^-4	0.818	INTRON CG12090
X	4207730	X_4207730_DEL [dm3] X_4313697_DEL [dm6]	CGGCTAA	C	3.139e^-4	0.818	DOWNSTREAM mei-9 INTRON CR44957
2R	17621787	2R_17621787_SNP [dm3] 2R_21734282_SNP [dm6]	G	A	3.142e^-4	0.818	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	4008136	3L_4008136_SNP [dm3] 3L_4008136_SNP [dm6]	C	T	3.147e^-4	0.818	INTERGENIC
3R	511774	3R_511774_SNP [dm3] 3R_4686052_SNP [dm6]	T	C	3.163e^-4	0.818	INTRON CG43427	TF binding site mE1_TFBS_cad
X	4234532	X_4234532_INS [dm3] X_4340499_INS [dm6]	T	TT	3.164e^-4	0.818	INTRON norpA
2R	17271694	2R_17271694_SNP [dm3] 2R_21384189_SNP [dm6]	G	T	3.175e^-4	0.818	UTR_5_PRIME CG10795 DOWNSTREAM EfSec	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	1483604	2L_1483604_DEL [dm3] 2L_1483604_DEL [dm6]	CT	C	3.199e^-4	0.818	INTERGENIC
3L	4488960	3L_4488960_SNP [dm3] 3L_4488960_SNP [dm6]	A	G	3.217e^-4	0.818	INTRON CG13722
2L	14700496	2L_14700496_SNP [dm3] 2L_14700496_SNP [dm6]	T	A	3.224e^-4	0.818	INTERGENIC
X	5864218	X_5864218_SNP [dm3] X_5970185_SNP [dm6]	G	A	3.226e^-4	0.818	INTRON Grip	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	16931992	2L_16931992_SNP [dm3] 2L_16931992_SNP [dm6]	A	T	3.226e^-4	0.818	INTERGENIC
2R	15138063	2R_15138063_SNP [dm3] 2R_19250558_SNP [dm6]	C	T	3.233e^-4	0.818	NON_SYNONYMOUS_CODING wbl DOWNSTREAM CG33454	TF binding site BDTNP1_TFBS_z
2L	702798	2L_702798_SNP [dm3] 2L_702798_SNP [dm6]	G	A	3.234e^-4	0.818	INTRON ds	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	13482674	2R_13482674_SNP [dm3] 2R_17595169_SNP [dm6]	C	G	3.240e^-4	0.818	UPSTREAM CG11423 INTRON lack
2R	5105862	2R_5105862_SNP [dm3] 2R_9218357_SNP [dm6]	T	G	3.240e^-4	0.818	INTERGENIC
3R	19084925	3R_19084925_INS [dm3] 3R_23259203_INS [dm6]	A	AAAGAACAAATAATTTTTTA...	3.241e^-4	0.818	INTRON CG13827	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	9817013	2R_9817013_SNP [dm3] 2R_13929508_SNP [dm6]	C	T	3.246e^-4	0.818	INTRON shot
X	5906601	X_5906601_SNP [dm3] X_6012568_SNP [dm6]	G	A	3.256e^-4	0.818	SYNONYMOUS_CODING mab-21	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25775796	3R_25775796_SNP [dm3] 3R_29950074_SNP [dm6]	T	C	3.258e^-4	0.818	DOWNSTREAM TkR99D INTERGENIC
3L	21409054	3L_21409054_SNP [dm3] 3L_21415954_SNP [dm6]	A	G	3.269e^-4	0.818	INTRON rgn
3L	2878957	3L_2878957_SNP [dm3] 3L_2878957_SNP [dm6]	C	G	3.271e^-4	0.818	UTR_5_PRIME CG43444	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_sens
2L	4143122	2L_4143122_SNP [dm3] 2L_4143122_SNP [dm6]	A	G	3.276e^-4	0.818	INTERGENIC
X	7632898	X_7632898_SNP [dm3] X_7738865_SNP [dm6]	T	C	3.284e^-4	0.818	INTRON Tom40	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15397638	2R_15397638_SNP [dm3] 2R_19510133_SNP [dm6]	C	T	3.285e^-4	0.818	SYNONYMOUS_CODING Ir56c DOWNSTREAM Ir56b
3R	15876864	3R_15876864_SNP [dm3] 3R_20051142_SNP [dm6]	C	G	3.304e^-4	0.818	INTRON CG17193
2L	19374824	2L_19374824_SNP [dm3] 2L_19374824_SNP [dm6]	G	C	3.305e^-4	0.818	INTERGENIC
3R	9534981	3R_9534981_SNP [dm3] 3R_13709259_SNP [dm6]	G	A	3.306e^-4	0.818	UTR_3_PRIME CG31469 DOWNSTREAM primo-2 & 2 others
2R	11466919	2R_11466919_SNP [dm3] 2R_15579414_SNP [dm6]	C	G	3.324e^-4	0.818	INTERGENIC
2R	546640	2R_546640_SNP [dm3] 2R_4659135_SNP [dm6]	C	T	3.329e^-4	0.818	INTERGENIC	transposable element FlyBase
3R	19900278	3R_19900278_SNP [dm3] 3R_24074556_SNP [dm6]	G	C	3.335e^-4	0.818	INTRON 4EHP
2R	3582034	2R_3582034_DEL [dm3] 2R_7694529_DEL [dm6]	TT	T	3.339e^-4	0.818	INTRON CG1399	TF binding site mE1_TFBS_inv
2L	6493334	2L_6493334_SNP [dm3] 2L_6493334_SNP [dm6]	A	G	3.342e^-4	0.818	SYNONYMOUS_CODING CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15081946	2R_15081946_SNP [dm3] 2R_19194441_SNP [dm6]	G	A	3.343e^-4	0.818	INTRON hppy
2L	17523426	2L_17523426_SNP [dm3] 2L_17523426_SNP [dm6]	C	T	3.350e^-4	0.818	NON_SYNONYMOUS_CODING CG15143 INTRON Dhc36C
3L	9735159	3L_9735159_SNP [dm3] 3L_9742059_SNP [dm6]	T	A	3.352e^-4	0.818	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13851319	3R_13851319_SNP [dm3] 3R_18025597_SNP [dm6]	C	T	3.357e^-4	0.818	DOWNSTREAM CG7794 INTERGENIC	TF binding site mE1_TFBS_cad
2L	4961573	2L_4961573_INS [dm3] 2L_4961573_INS [dm6]	A	ATCA	3.358e^-4	0.818	INTRON CG34124	TF binding site mE1_TFBS_chinmo
2R	17663922	2R_17663922_SNP [dm3] 2R_21776417_SNP [dm6]	G	A	3.359e^-4	0.818	INTERGENIC
3L	1086802	3L_1086802_INS [dm3] 3L_1086802_INS [dm6]	TC	CTAT	3.361e^-4	0.818	INTRON bab1
3L	6782152	3L_6782152_SNP [dm3] 3L_6789052_SNP [dm6]	G	C	3.364e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	14277922	2L_14277922_SNP [dm3] 2L_14277922_SNP [dm6]	A	G	3.364e^-4	0.818	UTR_3_PRIME CG32971 INTRON wb
2L	11401960	2L_11401960_SNP [dm3] 2L_11401960_SNP [dm6]	A	T	3.373e^-4	0.818	INTERGENIC	regulatory region REDfly_CRMs
3L	18066397	3L_18066397_SNP [dm3] 3L_18073297_SNP [dm6]	G	A	3.375e^-4	0.818	INTRON CG44004
2L	4848142	2L_4848142_SNP [dm3] 2L_4848142_SNP [dm6]	G	A	3.379e^-4	0.818	SYNONYMOUS_CODING CG11927 UPSTREAM mxt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_sens
2R	9292136	2R_9292136_SNP [dm3] 2R_13404631_SNP [dm6]	A	G	3.382e^-4	0.818	INTERGENIC
3L	4413253	3L_4413253_SNP [dm3] 3L_4413253_SNP [dm6]	A	C	3.384e^-4	0.818	INTRON DOR	TF binding site BDTNP1_TFBS_hb
X	6878463	X_6878463_SNP [dm3] X_6984430_SNP [dm6]	G	A	3.391e^-4	0.818	UTR_5_PRIME ogre INTRON ogre EXON CR44084	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3521274	3L_3521274_SNP [dm3] 3L_3521274_SNP [dm6]	A	C	3.391e^-4	0.818	INTRON Eip63E
2R	8393821	2R_8393821_SNP [dm3] 2R_12506316_SNP [dm6]	G	A	3.406e^-4	0.818	INTRON fdl	TF binding site BDTNP1_TFBS_dl
3R	22421061	3R_22421061_SNP [dm3] 3R_26595339_SNP [dm6]	A	C	3.418e^-4	0.818	UTR_3_PRIME scrib DOWNSTREAM scrib INTRON scrib
2L	17258831	2L_17258831_SNP [dm3] 2L_17258831_SNP [dm6]	G	A	3.421e^-4	0.818	INTRON beat-IIIc
X	11988190	X_11988190_SNP [dm3] X_12094157_SNP [dm6]	G	T	3.424e^-4	0.818	INTRON CR43960 & 1 other
3R	10668376	3R_10668376_SNP [dm3] 3R_14842654_SNP [dm6]	T	C	3.426e^-4	0.818	INTRON btsz
2L	19303994	2L_19303994_SNP [dm3] 2L_19303994_SNP [dm6]	A	G	3.432e^-4	0.818	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	7582017	X_7582017_SNP [dm3] X_7687984_SNP [dm6]	C	T	3.434e^-4	0.818	SYNONYMOUS_CODING CHES-1-like
2L	20026876	2L_20026876_SNP [dm3] 2L_20026876_SNP [dm6]	C	T	3.439e^-4	0.818	INTERGENIC
X	7581951	X_7581951_SNP [dm3] X_7687918_SNP [dm6]	G	A	3.453e^-4	0.818	SYNONYMOUS_CODING CHES-1-like
2R	9328801	2R_9328801_SNP [dm3] 2R_13441296_SNP [dm6]	A	G	3.457e^-4	0.818	SYNONYMOUS_CODING cnn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2057939	3L_2057939_SNP [dm3] 3L_2057939_SNP [dm6]	C	T	3.474e^-4	0.818	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11967662	3L_11967662_SNP [dm3] 3L_11974562_SNP [dm6]	T	C	3.480e^-4	0.818	UPSTREAM CG42397 & 1 other INTERGENIC
2R	17672659	2R_17672659_SNP [dm3] 2R_21785154_SNP [dm6]	C	G	3.481e^-4	0.818	INTERGENIC
2L	7707776	2L_7707776_SNP [dm3] 2L_7707776_SNP [dm6]	A	G	3.488e^-4	0.818	SYNONYMOUS_CODING Tep3 DOWNSTREAM CR44990
3L	20164205	3L_20164205_SNP [dm3] 3L_20171105_SNP [dm6]	G	A	3.489e^-4	0.818	INTRON CG42674	TF binding site BDTNP1_TFBS_twi
X	9279596	X_9279596_SNP [dm3] X_9385563_SNP [dm6]	G	T	3.498e^-4	0.818	INTRON mgl
2L	8447795	2L_8447795_SNP [dm3] 2L_8447795_SNP [dm6]	C	T	3.504e^-4	0.818	SYNONYMOUS_CODING U26 UTR_3_PRIME U26
3R	27057399	3R_27057399_SNP [dm3] 3R_31231677_SNP [dm6]	A	C	3.508e^-4	0.818	DOWNSTREAM CG15563 & 2 others INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	4141176	2L_4141176_SNP [dm3] 2L_4141176_SNP [dm6]	A	G	3.511e^-4	0.818	INTERGENIC
2L	19387906	2L_19387906_SNP [dm3] 2L_19387906_SNP [dm6]	A	G	3.525e^-4	0.818	SYNONYMOUS_CODING CG17549 INTRON CG17549
3L	9417794	3L_9417794_SNP [dm3] 3L_9424694_SNP [dm6]	T	C	3.536e^-4	0.818	UTR_3_PRIME aay INTRON CG3967	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	11276715	3L_11276715_SNP [dm3] 3L_11283615_SNP [dm6]	A	C	3.538e^-4	0.818	INTERGENIC
3L	11276725	3L_11276725_SNP [dm3] 3L_11283625_SNP [dm6]	A	T	3.538e^-4	0.818	INTERGENIC
X	18760125	X_18760125_SNP [dm3] X_18866092_SNP [dm6]	A	C	3.544e^-4	0.818	INTRON CG34401	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	17058442	3R_17058442_SNP [dm3] 3R_21232720_SNP [dm6]	A	G	3.551e^-4	0.818	SYNONYMOUS_CODING e	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26688049	3R_26688049_DEL [dm3] 3R_30862327_DEL [dm6]	GGTATA	T	3.553e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_gt
2L	13325482	2L_13325482_SNP [dm3] 2L_13325482_SNP [dm6]	C	A	3.562e^-4	0.818	INTRON CG43778
3L	20924804	3L_20924804_SNP [dm3] 3L_20931704_SNP [dm6]	T	C	3.567e^-4	0.818	INTRON fng	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13251526	3L_13251526_SNP [dm3] 3L_13258426_SNP [dm6]	T	A	3.569e^-4	0.818	INTRON caps
X	6877713	X_6877713_SNP [dm3] X_6983680_SNP [dm6]	A	T	3.569e^-4	0.818	UTR_5_PRIME ogre UPSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	8547330	X_8547330_SNP [dm3] X_8653297_SNP [dm6]	C	A	3.572e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3915710	3L_3915710_SNP [dm3] 3L_3915710_SNP [dm6]	A	T	3.573e^-4	0.818	INTRON Eip63F-1
2R	16235160	2R_16235160_SNP [dm3] 2R_20347655_SNP [dm6]	C	T	3.576e^-4	0.818	DOWNSTREAM CG16741 INTERGENIC
3L	7479886	3L_7479886_SNP [dm3] 3L_7486786_SNP [dm6]	C	T	3.577e^-4	0.818	INTRON mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11401918	2L_11401918_SNP [dm3] 2L_11401918_SNP [dm6]	G	T	3.577e^-4	0.818	INTERGENIC	regulatory region REDfly_CRMs
2R	5951041	2R_5951041_SNP [dm3] 2R_10063536_SNP [dm6]	T	G	3.588e^-4	0.818	UTR_3_PRIME magu & 1 other
3R	17758857	3R_17758857_SNP [dm3] 3R_21933135_SNP [dm6]	C	T	3.590e^-4	0.818	INTERGENIC
2L	9097660	2L_9097660_SNP [dm3] 2L_9097660_SNP [dm6]	T	G	3.593e^-4	0.818	NON_SYNONYMOUS_CODING CG31609
3R	4351121	3R_4351121_SNP [dm3] 3R_8525399_SNP [dm6]	T	G	3.596e^-4	0.818	SYNONYMOUS_CODING CG31259
2L	8798301	2L_8798301_INS [dm3] 2L_8798301_INS [dm6]	T	TCT	3.605e^-4	0.818	INTERGENIC
3R	19081249	3R_19081249_SNP [dm3] 3R_23255527_SNP [dm6]	C	G	3.612e^-4	0.818	SYNONYMOUS_CODING wda DOWNSTREAM EloA	TF binding site mE1_TFBS_cad
2L	13462607	2L_13462607_SNP [dm3] 2L_13462607_SNP [dm6]	C	T	3.626e^-4	0.818	INTRON CG42784	TF binding site mE1_TFBS_inv
3L	10264766	3L_10264766_DEL [dm3] 3L_10271666_DEL [dm6]	TTTT	AA	3.631e^-4	0.818	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	22419882	3R_22419882_SNP [dm3] 3R_26594160_SNP [dm6]	G	A	3.647e^-4	0.818	INTRON scrib
2L	19325524	2L_19325524_SNP [dm3] 2L_19325524_SNP [dm6]	C	T	3.651e^-4	0.818	EXON CR45700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	13360544	2R_13360544_SNP [dm3] 2R_17473039_SNP [dm6]	T	C	3.651e^-4	0.818	INTRON qkr54B
2R	3590127	2R_3590127_SNP [dm3] 2R_7702622_SNP [dm6]	A	G	3.655e^-4	0.818	SPLICE_SITE_REGION CG30493 DOWNSTREAM CG30496 & 1 other INTRON CG30493	TF binding site BDTNP1_TFBS_sna
3R	19623540	3R_19623540_SNP [dm3] 3R_23797818_SNP [dm6]	T	C	3.659e^-4	0.818	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	17564888	X_17564888_SNP [dm3] X_17670855_SNP [dm6]	C	A	3.659e^-4	0.818	SYNONYMOUS_CODING CG12990	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4434999	3L_4434999_SNP [dm3] 3L_4434999_SNP [dm6]	T	C	3.660e^-4	0.818	SYNONYMOUS_CODING nAChRbeta1	TF binding site mE1_TFBS_cad
X	10569521	X_10569521_SNP [dm3] X_10675488_SNP [dm6]	T	A	3.662e^-4	0.818	INTRON X11Lbeta
3R	14729019	3R_14729019_SNP [dm3] 3R_18903297_SNP [dm6]	G	A	3.663e^-4	0.818	UPSTREAM CG34284 INTERGENIC
2L	4140774	2L_4140774_SNP [dm3] 2L_4140774_SNP [dm6]	T	A	3.671e^-4	0.818	INTERGENIC
3R	5448622	3R_5448622_SNP [dm3] 3R_9622900_SNP [dm6]	G	T	3.683e^-4	0.818	UPSTREAM CG8312 INTRON CG8312	TF binding site mE1_TFBS_cad
3R	11322539	3R_11322539_DEL [dm3] 3R_15496817_DEL [dm6]	TC	T	3.684e^-4	0.818	INTERGENIC
3L	15205380	3L_15205380_SNP [dm3] 3L_15212280_SNP [dm6]	T	G	3.690e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9735039	3L_9735039_SNP [dm3] 3L_9741939_SNP [dm6]	A	T	3.690e^-4	0.818	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14217522	2L_14217522_SNP [dm3] 2L_14217522_SNP [dm6]	C	G	3.695e^-4	0.818	INTRON Dyrk2
3L	15932981	3L_15932981_SNP [dm3] 3L_15939881_SNP [dm6]	C	T	3.695e^-4	0.818	INTRON Pka-C3
X	9816859	X_9816859_DEL [dm3] X_9922826_DEL [dm6]	CC	C	3.696e^-4	0.818	INTERGENIC
3R	17839126	3R_17839126_SNP [dm3] 3R_22013404_SNP [dm6]	A	G	3.703e^-4	0.818	UTR_3_PRIME Eip93F
2L	4847910	2L_4847910_SNP [dm3] 2L_4847910_SNP [dm6]	C	A	3.706e^-4	0.818	NON_SYNONYMOUS_CODING CG11927 UPSTREAM mxt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_Ubx
3L	15205272	3L_15205272_DEL [dm3] 3L_15212172_DEL [dm6]	GAGGTGGTGTTGGAG...	G	3.706e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15205366	3L_15205366_DEL [dm3] 3L_15212266_DEL [dm6]	AA	A	3.706e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21454048	3R_21454048_SNP [dm3] 3R_25628326_SNP [dm6]	C	T	3.710e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16789469	3L_16789469_SNP [dm3] 3L_16796369_SNP [dm6]	G	A	3.712e^-4	0.818	INTRON CG9674	TF binding site mE1_TFBS_cad
3L	12161882	3L_12161882_SNP [dm3] 3L_12168782_SNP [dm6]	C	T	3.714e^-4	0.818	INTRON Rh7	TF binding site mE1_TFBS_cad
2R	15067642	2R_15067642_SNP [dm3] 2R_19180137_SNP [dm6]	A	T	3.717e^-4	0.818	INTRON hppy	TF binding site mE1_TFBS_cad
X	4216461	X_4216461_DEL [dm3] X_4322428_DEL [dm6]	TATGT	T	3.722e^-4	0.818	UPSTREAM norpA & 1 other DOWNSTREAM CG2982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
X	4216552	X_4216552_SNP [dm3] X_4322519_SNP [dm6]	T	A	3.722e^-4	0.818	UPSTREAM norpA & 1 other DOWNSTREAM CG2982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3L	6548667	3L_6548667_SNP [dm3] 3L_6555567_SNP [dm6]	A	G	3.728e^-4	0.818	INTRON CG18769	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14020875	2L_14020875_SNP [dm3] 2L_14020875_SNP [dm6]	T	C	3.733e^-4	0.818	UPSTREAM NimC3 DOWNSTREAM CR44849 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27112009	3R_27112009_SNP [dm3] 3R_31286287_SNP [dm6]	C	T	3.740e^-4	0.818	INTERGENIC
2L	14536528	2L_14536528_SNP [dm3] 2L_14536528_SNP [dm6]	C	T	3.741e^-4	0.818	INTERGENIC
X	2690817	X_2690817_SNP [dm3] X_2796784_SNP [dm6]	C	A	3.742e^-4	0.818	UPSTREAM w INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	4588770	X_4588770_SNP [dm3] X_4694737_SNP [dm6]	T	A	3.744e^-4	0.818	INTRON ctp	TF binding site mE1_TFBS_Trl
3L	1451508	3L_1451508_SNP [dm3] 3L_1451508_SNP [dm6]	T	C	3.748e^-4	0.818	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
3R	1230975	3R_1230975_SNP [dm3] 3R_5405253_SNP [dm6]	T	G	3.749e^-4	0.818	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	18213760	3L_18213760_SNP [dm3] 3L_18220660_SNP [dm6]	T	A	3.755e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
2R	9343439	2R_9343439_SNP [dm3] 2R_13455934_SNP [dm6]	C	A	3.755e^-4	0.818	INTRON arr
2R	17100956	2R_17100956_SNP [dm3] 2R_21213451_SNP [dm6]	A	G	3.757e^-4	0.818	SYNONYMOUS_CODING CG4302 DOWNSTREAM CG44245	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8645133	2R_8645133_SNP [dm3] 2R_12757628_SNP [dm6]	G	C	3.759e^-4	0.818	UTR_5_PRIME Dgkepsilon UPSTREAM Dgkepsilon & 1 other DOWNSTREAM mRpL18	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
X	4091100	X_4091100_SNP [dm3] X_4197067_SNP [dm6]	G	C	3.762e^-4	0.818	INTRON Fas2
3R	19892826	3R_19892826_DEL [dm3] 3R_24067104_DEL [dm6]	TAT	T	3.763e^-4	0.818	UTR_3_PRIME 4EHP DOWNSTREAM 4EHP INTRON 4EHP
2L	14536525	2L_14536525_SNP [dm3] 2L_14536525_SNP [dm6]	A	C	3.763e^-4	0.818	INTERGENIC
3L	6547468	3L_6547468_SNP [dm3] 3L_6554368_SNP [dm6]	G	T	3.763e^-4	0.818	INTRON CG18769
2L	11849745	2L_11849745_SNP [dm3] 2L_11849745_SNP [dm6]	G	A	3.774e^-4	0.818	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
2R	16862397	2R_16862397_SNP [dm3] 2R_20974892_SNP [dm6]	T	C	3.791e^-4	0.818	UPSTREAM CG15649 & 1 other INTERGENIC
2L	1750985	2L_1750985_SNP [dm3] 2L_1750985_SNP [dm6]	A	C	3.800e^-4	0.818	SYNONYMOUS_CODING CG17712 DOWNSTREAM CG17646	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
3R	12898269	3R_12898269_SNP [dm3] 3R_17072547_SNP [dm6]	T	A	3.800e^-4	0.818	UPSTREAM mRpS11 INTRON Ns1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5146797	3L_5146797_SNP [dm3] 3L_5153697_SNP [dm6]	C	G	3.807e^-4	0.818	SYNONYMOUS_CODING Srp54k	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	1697012	X_1697012_SNP [dm3] X_1802979_SNP [dm6]	C	T	3.810e^-4	0.818	INTRON CG42666	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13276317	2R_13276317_SNP [dm3] 2R_17388812_SNP [dm6]	C	A	3.811e^-4	0.818	EXON CR44344	TF binding site mE1_TFBS_Kr
3L	21451941	3L_21451941_SNP [dm3] 3L_21458841_SNP [dm6]	G	T	3.826e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12449224	3L_12449224_SNP [dm3] 3L_12456124_SNP [dm6]	T	C	3.828e^-4	0.818	INTERGENIC
2R	3256787	2R_3256787_SNP [dm3] 2R_7369282_SNP [dm6]	C	T	3.844e^-4	0.818	INTRON Dscam1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	528058	3R_528058_SNP [dm3] 3R_4702336_SNP [dm6]	A	G	3.873e^-4	0.818	SYNONYMOUS_CODING CG43427	TF binding site mE1_TFBS_cad
X	10906159	X_10906159_SNP [dm3] X_11012126_SNP [dm6]	G	A	3.897e^-4	0.818	INTRON CG42339
2L	15901048	2L_15901048_SNP [dm3] 2L_15901048_SNP [dm6]	A	G	3.900e^-4	0.818	NON_SYNONYMOUS_CODING CG31821 UPSTREAM CG31823
2R	16436597	2R_16436597_SNP [dm3] 2R_20549092_SNP [dm6]	C	T	3.902e^-4	0.818	NON_SYNONYMOUS_CODING Obp57d UTR_3_PRIME Cpr57A UPSTREAM Obp57e DOWNSTREAM Cpr57A	regulatory region REDfly_CRMs
2R	19897978	2R_19897978_SNP [dm3] 2R_24010455_SNP [dm6]	T	C	3.903e^-4	0.818	NON_SYNONYMOUS_CODING Unc-89 INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	10405408	X_10405408_DEL [dm3] X_10511375_DEL [dm6]	CAGCAGCAGC	C	3.903e^-4	0.818	INTRON spri
2R	5016594	2R_5016594_SNP [dm3] 2R_9129089_SNP [dm6]	C	G	3.913e^-4	0.818	INTRON CG18659
3R	26036296	3R_26036296_SNP [dm3] 3R_30210574_SNP [dm6]	G	T	3.918e^-4	0.818	UPSTREAM CecA1 & 1 other DOWNSTREAM Anp INTERGENIC	regulatory region REDfly_CRMs
2R	13276650	2R_13276650_SNP [dm3] 2R_17389145_SNP [dm6]	T	C	3.920e^-4	0.818	UPSTREAM CR44344 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sbb
X	2479891	X_2479891_SNP [dm3] X_2585858_SNP [dm6]	T	G	3.920e^-4	0.818	UPSTREAM wds & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	11591290	X_11591290_SNP [dm3] X_11697257_SNP [dm6]	T	A	3.921e^-4	0.818	INTRON PhKgamma	TF binding site mE1_TFBS_sens
3R	9423578	3R_9423578_DEL [dm3] 3R_13597856_DEL [dm6]	CG	C	3.923e^-4	0.818	INTERGENIC
2L	2462829	2L_2462829_DEL [dm3] 2L_2462829_DEL [dm6]	CTTTAGCTGATAAAGGA...	AC	3.924e^-4	0.818	DOWNSTREAM tRNA:Y1:22Fa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	10827662	X_10827662_SNP [dm3] X_10933629_SNP [dm6]	C	G	3.925e^-4	0.818	INTRON Myo10A	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	17254730	3L_17254730_INS [dm3] 3L_17261630_INS [dm6]	G	AA	3.930e^-4	0.818	INTRON CR43870
X	15530042	X_15530042_DEL [dm3] X_15636009_DEL [dm6]	AT	A	3.933e^-4	0.818	UPSTREAM CR44423 INTERGENIC
X	15530047	X_15530047_INS [dm3] X_15636014_INS [dm6]	A	CGGT	3.933e^-4	0.818	UPSTREAM CR44423 INTERGENIC
3L	4245845	3L_4245845_SNP [dm3] 3L_4245845_SNP [dm6]	G	T	3.933e^-4	0.818	UTR_3_PRIME pav DOWNSTREAM ago
2L	3993370	2L_3993370_SNP [dm3] 2L_3993370_SNP [dm6]	G	T	3.935e^-4	0.818	INTERGENIC
X	7425469	X_7425469_DEL [dm3] X_7531436_DEL [dm6]	ATTAA	A	3.936e^-4	0.818	INTRON CG32719
3L	15205415	3L_15205415_SNP [dm3] 3L_15212315_SNP [dm6]	A	T	3.937e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15205402	3L_15205402_SNP [dm3] 3L_15212302_SNP [dm6]	A	C	3.937e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15205406	3L_15205406_SNP [dm3] 3L_15212306_SNP [dm6]	T	C	3.937e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5648677	3L_5648677_SNP [dm3] 3L_5655577_SNP [dm6]	A	G	3.939e^-4	0.818	INTRON lin-28	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	19623528	3R_19623528_SNP [dm3] 3R_23797806_SNP [dm6]	A	G	3.941e^-4	0.818	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	3267472	2L_3267472_SNP [dm3] 2L_3267472_SNP [dm6]	C	G	3.943e^-4	0.818	UPSTREAM CR44484 INTERGENIC
2R	6795353	2R_6795353_SNP [dm3] 2R_10907848_SNP [dm6]	C	T	3.949e^-4	0.818	INTERGENIC
2L	1497718	2L_1497718_SNP [dm3] 2L_1497718_SNP [dm6]	A	T	3.951e^-4	0.818	SYNONYMOUS_CODING CG31661 DOWNSTREAM CG31926 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4815315	2L_4815315_SNP [dm3] 2L_4815315_SNP [dm6]	T	G	3.954e^-4	0.818	SYNONYMOUS_CODING CG15629 DOWNSTREAM CG3225
3R	12941004	3R_12941004_SNP [dm3] 3R_17115282_SNP [dm6]	T	C	3.966e^-4	0.818	INTRON cher
X	1767715	X_1767715_SNP [dm3] X_1873682_SNP [dm6]	A	T	3.967e^-4	0.818	UPSTREAM Vps26 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	17240573	3L_17240573_SNP [dm3] 3L_17247473_SNP [dm6]	G	A	3.968e^-4	0.818	INTRON CR43870
2R	12114321	2R_12114321_SNP [dm3] 2R_16226816_SNP [dm6]	A	G	3.973e^-4	0.818	UPSTREAM CG15706 INTRON CG15706 & 1 other
2R	3581782	2R_3581782_SNP [dm3] 2R_7694277_SNP [dm6]	A	G	3.987e^-4	0.818	INTRON CG1399	TF binding site mE1_TFBS_inv
3L	8797746	3L_8797746_SNP [dm3] 3L_8804646_SNP [dm6]	G	C	3.987e^-4	0.818	UPSTREAM CG34427 & 1 other INTERGENIC
2R	16422124	2R_16422124_SNP [dm3] 2R_20534619_SNP [dm6]	T	C	3.990e^-4	0.818	DOWNSTREAM CG30154 INTRON CG18067
2R	13833347	2R_13833347_SNP [dm3] 2R_17945842_SNP [dm6]	C	A	4.001e^-4	0.818	INTERGENIC
3R	24111509	3R_24111509_SNP [dm3] 3R_28285787_SNP [dm6]	G	C	4.002e^-4	0.818	INTERGENIC
2L	12575419	2L_12575419_SNP [dm3] 2L_12575419_SNP [dm6]	C	T	4.009e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3L	18857642	3L_18857642_SNP [dm3] 3L_18864542_SNP [dm6]	G	A	4.013e^-4	0.818	SYNONYMOUS_CODING CG6865	silencer mE1_HDAC_PRE
3R	27402861	3R_27402861_SNP [dm3] 3R_31577139_SNP [dm6]	C	T	4.016e^-4	0.818	INTRON pygo
3L	7975835	3L_7975835_SNP [dm3] 3L_7982735_SNP [dm6]	T	C	4.017e^-4	0.818	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	15402740	X_15402740_SNP [dm3] X_15508707_SNP [dm6]	G	A	4.021e^-4	0.818	UPSTREAM mir-304 & 1 other DOWNSTREAM mir-283 INTRON Gmap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22859653	3R_22859653_SNP [dm3] 3R_27033931_SNP [dm6]	G	A	4.022e^-4	0.818	INTRON RYa-R	TF binding site BDTNP1_TFBS_da
3R	17509236	3R_17509236_SNP [dm3] 3R_21683514_SNP [dm6]	T	A	4.023e^-4	0.818	INTRON CG31176	TF binding site mE1_TFBS_cad
2R	20566720	2R_20566720_DEL [dm3] 2R_24679197_DEL [dm6]	GTGTCT	G	4.026e^-4	0.818	INTRON Mmp1
2L	10082295	2L_10082295_SNP [dm3] 2L_10082295_SNP [dm6]	C	T	4.027e^-4	0.818	INTRON CG44153	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4076050	2R_4076050_SNP [dm3] 2R_8188545_SNP [dm6]	G	A	4.028e^-4	0.818	INTRON LRP1	TF binding site mE1_TFBS_cad
3L	15546736	3L_15546736_SNP [dm3] 3L_15553636_SNP [dm6]	G	T	4.029e^-4	0.818	UPSTREAM AGO2 DOWNSTREAM CrebA INTERGENIC	transposable element FlyBase
3L	16151805	3L_16151805_SNP [dm3] 3L_16158705_SNP [dm6]	G	T	4.033e^-4	0.818	INTRON CG5151
2L	15917209	2L_15917209_SNP [dm3] 2L_15917209_SNP [dm6]	T	C	4.035e^-4	0.818	SYNONYMOUS_CODING CG13244 INTRON beat-Ib
3R	14120158	3R_14120158_SNP [dm3] 3R_18294436_SNP [dm6]	A	C	4.046e^-4	0.818	INTRON l_3_05822
3L	13251531	3L_13251531_SNP [dm3] 3L_13258431_SNP [dm6]	A	T	4.064e^-4	0.818	INTRON caps
3L	8527138	3L_8527138_SNP [dm3] 3L_8534038_SNP [dm6]	G	C	4.065e^-4	0.818	UTR_3_PRIME foi UPSTREAM ergic53 DOWNSTREAM foi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
3R	15254404	3R_15254404_SNP [dm3] 3R_19428682_SNP [dm6]	C	T	4.067e^-4	0.818	INTRON CG31221
3L	15075667	3L_15075667_INS [dm3] 3L_15082567_INS [dm6]	A	AAA	4.068e^-4	0.818	INTRON cp309	TF binding site mE1_TFBS_cad
2R	12458064	2R_12458064_SNP [dm3] 2R_16570559_SNP [dm6]	A	G	4.069e^-4	0.818	DOWNSTREAM CG4945 INTRON RpS15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8480553	3R_8480553_SNP [dm3] 3R_12654831_SNP [dm6]	T	C	4.080e^-4	0.818	UTR_5_PRIME CG6225 INTRON CG6225	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	27383071	3R_27383071_SNP [dm3] 3R_31557349_SNP [dm6]	T	C	4.081e^-4	0.818	INTRON nyo	TF binding site mE1_TFBS_chinmo
2R	7809310	2R_7809310_SNP [dm3] 2R_11921805_SNP [dm6]	T	G	4.082e^-4	0.818	INTERGENIC
X	12884401	X_12884401_SNP [dm3] X_12990368_SNP [dm6]	A	T	4.084e^-4	0.818	INTRON rad
2L	9665238	2L_9665238_SNP [dm3] 2L_9665238_SNP [dm6]	G	C	4.085e^-4	0.818	INTERGENIC
X	20114861	X_20114861_SNP [dm3] X_20243787_SNP [dm6]	T	C	4.088e^-4	0.818	UPSTREAM Peritrophin-A DOWNSTREAM obst-A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	21891674	3R_21891674_SNP [dm3] 3R_26065952_SNP [dm6]	A	G	4.097e^-4	0.818	INTERGENIC
3R	10315503	3R_10315503_SNP [dm3] 3R_14489781_SNP [dm6]	G	A	4.102e^-4	0.818	INTERGENIC
X	19178907	X_19178907_SNP [dm3] X_19284874_SNP [dm6]	C	A	4.104e^-4	0.818	UPSTREAM CG8034 INTRON CG8034	TF binding site mE1_TFBS_chinmo
X	21948099	X_21948099_SNP [dm3] X_22546263_SNP [dm6]	T	A	4.108e^-4	0.818	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	319570	2L_319570_SNP [dm3] 2L_319570_SNP [dm6]	A	G	4.110e^-4	0.818	UPSTREAM CG11912 DOWNSTREAM CG11911 INTRON Plc21C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	17951784	3R_17951784_SNP [dm3] 3R_22126062_SNP [dm6]	T	C	4.120e^-4	0.818	SYNONYMOUS_CODING CG42390	TF binding site mE1_TFBS_cad
X	15529751	X_15529751_SNP [dm3] X_15635718_SNP [dm6]	T	C	4.123e^-4	0.818	UPSTREAM CR44423 INTERGENIC
X	19244553	X_19244553_SNP [dm3] X_19350520_SNP [dm6]	G	A	4.124e^-4	0.818	INTERGENIC
2L	11848439	2L_11848439_SNP [dm3] 2L_11848439_SNP [dm6]	A	T	4.130e^-4	0.818	INTRON Pde1c & 1 other	TF binding site mE1_TFBS_HSA
3R	25824864	3R_25824864_SNP [dm3] 3R_29999142_SNP [dm6]	C	A	4.132e^-4	0.818	SYNONYMOUS_CODING CG11504 UPSTREAM CG34298	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9673537	2L_9673537_SNP [dm3] 2L_9673537_SNP [dm6]	G	A	4.138e^-4	0.818	INTERGENIC
2L	12394560	2L_12394560_SNP [dm3] 2L_12394560_SNP [dm6]	A	C	4.141e^-4	0.818	INTRON bru-2
2R	12456050	2R_12456050_SNP [dm3] 2R_16568545_SNP [dm6]	T	A	4.144e^-4	0.818	INTRON CG4945	TF binding site mE1_TFBS_cad
3L	2994224	3L_2994224_SNP [dm3] 3L_2994224_SNP [dm6]	G	A	4.145e^-4	0.818	UPSTREAM CG2113 INTERGENIC
3R	14179936	3R_14179936_SNP [dm3] 3R_18354214_SNP [dm6]	G	A	4.153e^-4	0.818	SYNONYMOUS_CODING CG15803	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	10656501	3R_10656501_SNP [dm3] 3R_14830779_SNP [dm6]	A	G	4.153e^-4	0.818	INTRON btsz
3R	11767013	3R_11767013_SNP [dm3] 3R_15941291_SNP [dm6]	G	T	4.155e^-4	0.818	INTRON Sap47
2R	11988284	2R_11988284_SNP [dm3] 2R_16100779_SNP [dm6]	C	T	4.163e^-4	0.818	NON_SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_sens
X	11085666	X_11085666_SNP [dm3] X_11191633_SNP [dm6]	T	A	4.167e^-4	0.818	INTERGENIC
X	4216374	X_4216374_SNP [dm3] X_4322341_SNP [dm6]	G	A	4.167e^-4	0.818	UPSTREAM norpA & 1 other DOWNSTREAM CG2982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2L	7615825	2L_7615825_SNP [dm3] 2L_7615825_SNP [dm6]	C	A	4.173e^-4	0.818	NON_SYNONYMOUS_CODING CG6739 UTR_3_PRIME CG6739
3L	10725014	3L_10725014_DEL [dm3] 3L_10731914_DEL [dm6]	TG	T	4.176e^-4	0.818	INTERGENIC
3L	4817173	3L_4817173_SNP [dm3] 3L_4817173_SNP [dm6]	G	A	4.178e^-4	0.818	SYNONYMOUS_CODING Dhc64C
3L	19175725	3L_19175725_SNP [dm3] 3L_19182625_SNP [dm6]	G	A	4.178e^-4	0.818	INTRON fz2	TF binding site mE1_TFBS_cad
X	16811509	X_16811509_SNP [dm3] X_16917476_SNP [dm6]	C	A	4.183e^-4	0.818	INTRON CG4928
2R	20544729	2R_20544729_SNP [dm3] 2R_24657206_SNP [dm6]	G	A	4.186e^-4	0.818	INTERGENIC
3L	15205413	3L_15205413_SNP [dm3] 3L_15212313_SNP [dm6]	G	A	4.190e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5355443	2L_5355443_SNP [dm3] 2L_5355443_SNP [dm6]	T	A	4.198e^-4	0.818	INTRON nompC	TF binding site mE1_TFBS_cad
3L	3998058	3L_3998058_SNP [dm3] 3L_3998058_SNP [dm6]	G	A	4.200e^-4	0.818	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	24248378	3R_24248378_SNP [dm3] 3R_28422656_SNP [dm6]	A	G	4.203e^-4	0.818	INTRON beat-VI
3R	10435009	3R_10435009_SNP [dm3] 3R_14609287_SNP [dm6]	C	A	4.211e^-4	0.818	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	9459132	X_9459132_SNP [dm3] X_9565099_SNP [dm6]	T	C	4.212e^-4	0.818	SYNONYMOUS_CODING Cubn
3R	10435085	3R_10435085_SNP [dm3] 3R_14609363_SNP [dm6]	G	T	4.216e^-4	0.818	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	14270586	2L_14270586_SNP [dm3] 2L_14270586_SNP [dm6]	T	C	4.221e^-4	0.818	INTRON wb
3L	2956855	3L_2956855_SNP [dm3] 3L_2956855_SNP [dm6]	A	G	4.226e^-4	0.818	SYNONYMOUS_CODING Shab INTRON Shab
X	4235448	X_4235448_SNP [dm3] X_4341415_SNP [dm6]	C	T	4.241e^-4	0.818	INTRON norpA
2L	18944985	2L_18944985_SNP [dm3] 2L_18944985_SNP [dm6]	C	T	4.243e^-4	0.818	UPSTREAM CR44740 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
X	14659974	X_14659974_SNP [dm3] X_14765941_SNP [dm6]	A	T	4.250e^-4	0.818	UPSTREAM CG15890 INTERGENIC
X	7369861	X_7369861_SNP [dm3] X_7475828_SNP [dm6]	T	C	4.271e^-4	0.818	INTERGENIC
2L	14428547	2L_14428547_SNP [dm3] 2L_14428547_SNP [dm6]	A	G	4.274e^-4	0.818	DOWNSTREAM CR44732 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	5624100	2L_5624100_SNP [dm3] 2L_5624100_SNP [dm6]	G	T	4.276e^-4	0.818	UPSTREAM Cyp6a16 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	11370901	2L_11370901_DEL [dm3] 2L_11370901_DEL [dm6]	AGAAATATACTTAAGAGAGC...	A	4.276e^-4	0.818	INTRON salr
3R	10743061	3R_10743061_SNP [dm3] 3R_14917339_SNP [dm6]	T	G	4.289e^-4	0.818	INTERGENIC
X	7237246	X_7237246_SNP [dm3] X_7343213_SNP [dm6]	G	A	4.291e^-4	0.818	DOWNSTREAM CBP INTRON CR44357 & 1 other
X	7237259	X_7237259_SNP [dm3] X_7343226_SNP [dm6]	T	G	4.291e^-4	0.818	DOWNSTREAM CBP INTRON CR44357 & 1 other
X	7237260	X_7237260_SNP [dm3] X_7343227_SNP [dm6]	G	C	4.291e^-4	0.818	DOWNSTREAM CBP INTRON CR44357 & 1 other
2R	16426071	2R_16426071_SNP [dm3] 2R_20538566_SNP [dm6]	C	A	4.294e^-4	0.818	DOWNSTREAM CG13427 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	20809699	3L_20809699_INS [dm3] 3L_20816599_INS [dm6]	T	TCTC	4.297e^-4	0.818	UTR_5_PRIME Pka-R1 UPSTREAM CG3618 DOWNSTREAM Mst77F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11718346	2R_11718346_DEL [dm3] 2R_15830841_DEL [dm6]	TT	T	4.297e^-4	0.818	INTRON tun & 1 other	regulatory region REDfly_CRMs
3L	7479848	3L_7479848_SNP [dm3] 3L_7486748_SNP [dm6]	C	A	4.304e^-4	0.818	SPLICE_SITE_REGION mthl6 INTRON mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10141768	3R_10141768_SNP [dm3] 3R_14316046_SNP [dm6]	C	T	4.315e^-4	0.818	START_GAINED pr-set7 UTR_5_PRIME pr-set7 UPSTREAM pr-set7 DOWNSTREAM Crz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
2R	4745100	2R_4745100_SNP [dm3] 2R_8857595_SNP [dm6]	G	A	4.315e^-4	0.818	INTERGENIC
3L	15233541	3L_15233541_SNP [dm3] 3L_15240441_SNP [dm6]	G	A	4.317e^-4	0.818	UTR_3_PRIME Tollo
X	8922480	X_8922480_SNP [dm3] X_9028447_SNP [dm6]	C	T	4.321e^-4	0.818	UTR_3_PRIME rdgA DOWNSTREAM rdgA INTRON CR43836
2R	3585041	2R_3585041_SNP [dm3] 2R_7697536_SNP [dm6]	A	C	4.334e^-4	0.818	INTRON CG1399	TF binding site BDTNP1_TFBS_dl
2L	4143375	2L_4143375_SNP [dm3] 2L_4143375_SNP [dm6]	A	C	4.338e^-4	0.818	INTERGENIC
3L	3014246	3L_3014246_SNP [dm3] 3L_3014246_SNP [dm6]	T	A	4.339e^-4	0.818	DOWNSTREAM CG32488 INTERGENIC
2R	9410998	2R_9410998_SNP [dm3] 2R_13523493_SNP [dm6]	C	T	4.343e^-4	0.818	DOWNSTREAM CG13331 INTRON Vmat
2R	20978965	2R_20978965_SNP [dm3] 2R_25091442_SNP [dm6]	C	G	4.350e^-4	0.818	INTRON lov
2R	20986249	2R_20986249_SNP [dm3] 2R_25098726_SNP [dm6]	T	C	4.350e^-4	0.818	UPSTREAM lov INTRON lov	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	20994026	2R_20994026_SNP [dm3] 2R_25106503_SNP [dm6]	A	T	4.350e^-4	0.818	INTRON lov
3R	22859628	3R_22859628_SNP [dm3] 3R_27033906_SNP [dm6]	A	G	4.355e^-4	0.818	INTRON RYa-R	TF binding site BDTNP1_TFBS_da
2R	10382797	2R_10382797_SNP [dm3] 2R_14495292_SNP [dm6]	A	G	4.356e^-4	0.818	SYNONYMOUS_CODING L	TF binding site mE1_TFBS_cad
X	2690820	X_2690820_SNP [dm3] X_2796787_SNP [dm6]	G	C	4.360e^-4	0.818	UPSTREAM w INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	6535812	3R_6535812_SNP [dm3] 3R_10710090_SNP [dm6]	G	T	4.361e^-4	0.818	SYNONYMOUS_CODING CG14689 UPSTREAM CG31373	TF binding site mE1_TFBS_cad
2L	14590321	2L_14590321_SNP [dm3] 2L_14590321_SNP [dm6]	G	T	4.374e^-4	0.818	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11286683	2L_11286683_DEL [dm3] 2L_11286683_DEL [dm6]	GGA	C	4.385e^-4	0.818	UPSTREAM Osi21 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4865876	X_4865876_DEL [dm3] X_4971843_DEL [dm6]	ATATATATATATATAT...	A	4.386e^-4	0.818	INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	6063140	3L_6063140_SNP [dm3] 3L_6070040_SNP [dm6]	T	A	4.386e^-4	0.818	INTRON CG42269
3L	6063148	3L_6063148_SNP [dm3] 3L_6070048_SNP [dm6]	T	A	4.386e^-4	0.818	INTRON CG42269
2R	16607886	2R_16607886_SNP [dm3] 2R_20720381_SNP [dm6]	G	T	4.393e^-4	0.818	INTRON dpr
2L	7207464	2L_7207464_SNP [dm3] 2L_7207464_SNP [dm6]	A	T	4.395e^-4	0.818	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784
3R	710709	3R_710709_INS [dm3] 3R_4884987_INS [dm6]	C	CGTACTTCTC	4.398e^-4	0.818	INTERGENIC	TF binding site mE1_TFBS_cad
2L	9363159	2L_9363159_DEL [dm3] 2L_9363159_DEL [dm6]	GC	G	4.402e^-4	0.818	INTERGENIC
2L	19595289	2L_19595289_SNP [dm3] 2L_19595289_SNP [dm6]	C	T	4.410e^-4	0.818	INTRON Lar
2R	4966513	2R_4966513_SNP [dm3] 2R_9079008_SNP [dm6]	G	A	4.413e^-4	0.818	INTRON CG8083
2L	17250654	2L_17250654_SNP [dm3] 2L_17250654_SNP [dm6]	T	A	4.419e^-4	0.818	INTRON beat-IIIc	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3R	12739886	3R_12739886_SNP [dm3] 3R_16914164_SNP [dm6]	A	G	4.429e^-4	0.818	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	2335230	3L_2335230_SNP [dm3] 3L_2335230_SNP [dm6]	A	G	4.433e^-4	0.818	INTRON MsR1
2L	15502101	2L_15502101_MNP [dm3] 2L_15502101_MNP [dm6]	CTC	TCT	4.435e^-4	0.818	INTRON lace
2L	5495871	2L_5495871_SNP [dm3] 2L_5495871_SNP [dm6]	A	C	4.442e^-4	0.818	INTERGENIC	TF binding site mE1_TFBS_sbb
3L	9403556	3L_9403556_SNP [dm3] 3L_9410456_SNP [dm6]	G	A	4.443e^-4	0.818	UPSTREAM CG3689 INTRON CG4022	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	11401961	2L_11401961_SNP [dm3] 2L_11401961_SNP [dm6]	C	G	4.455e^-4	0.818	INTERGENIC	regulatory region REDfly_CRMs
2L	6475042	2L_6475042_SNP [dm3] 2L_6475042_SNP [dm6]	A	G	4.456e^-4	0.818	SYNONYMOUS_CODING CG9536	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4140740	2L_4140740_SNP [dm3] 2L_4140740_SNP [dm6]	C	T	4.458e^-4	0.818	INTERGENIC
3L	9417823	3L_9417823_SNP [dm3] 3L_9424723_SNP [dm6]	A	C	4.464e^-4	0.818	UTR_3_PRIME aay INTRON CG3967	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	14698105	2L_14698105_SNP [dm3] 2L_14698105_SNP [dm6]	G	C	4.467e^-4	0.818	INTERGENIC
2R	16607643	2R_16607643_SNP [dm3] 2R_20720138_SNP [dm6]	C	T	4.475e^-4	0.818	INTRON dpr
2R	16864024	2R_16864024_SNP [dm3] 2R_20976519_SNP [dm6]	A	C	4.476e^-4	0.818	UPSTREAM CG9344 INTRON CG34115	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	11351217	2L_11351217_SNP [dm3] 2L_11351217_SNP [dm6]	A	C	4.477e^-4	0.818	INTERGENIC	regulatory region REDfly_CRMs
2L	13850978	2L_13850978_SNP [dm3] 2L_13850978_SNP [dm6]	G	A	4.478e^-4	0.818	DOWNSTREAM CG7968 INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA
2R	9280908	2R_9280908_SNP [dm3] 2R_13393403_SNP [dm6]	T	A	4.480e^-4	0.818	UPSTREAM AttC & 1 other INTERGENIC
3R	22138144	3R_22138144_SNP [dm3] 3R_26312422_SNP [dm6]	A	G	4.488e^-4	0.818	INTERGENIC
3R	24440591	3R_24440591_SNP [dm3] 3R_28614869_SNP [dm6]	A	G	4.494e^-4	0.818	SYNONYMOUS_CODING CG10011	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24440714	3R_24440714_SNP [dm3] 3R_28614992_SNP [dm6]	G	C	4.499e^-4	0.818	SYNONYMOUS_CODING CG10011	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2389368	3L_2389368_SNP [dm3] 3L_2389368_SNP [dm6]	C	G	4.514e^-4	0.818	NON_SYNONYMOUS_CODING CG42787 DOWNSTREAM CG32299 & 1 other INTRON CG45186
X	10116306	X_10116306_SNP [dm3] X_10222273_SNP [dm6]	C	T	4.530e^-4	0.818	UPSTREAM CG34408 INTRON CG34408
3L	4156817	3L_4156817_SNP [dm3] 3L_4156817_SNP [dm6]	G	C	4.535e^-4	0.818	INTRON nab	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	10141699	3R_10141699_DEL [dm3] 3R_14315977_DEL [dm6]	TGAAAATAT	T	4.536e^-4	0.818	UPSTREAM pr-set7 DOWNSTREAM Crz INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
3R	10141723	3R_10141723_INS [dm3] 3R_14316001_INS [dm6]	A	AA	4.536e^-4	0.818	UPSTREAM pr-set7 DOWNSTREAM Crz INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
3R	24234649	3R_24234649_SNP [dm3] 3R_28408927_SNP [dm6]	G	T	4.553e^-4	0.818	INTERGENIC
3L	14160118	3L_14160118_SNP [dm3] 3L_14167018_SNP [dm6]	A	T	4.558e^-4	0.818	INTERGENIC	regulatory region REDfly_CRMs
3R	27383183	3R_27383183_SNP [dm3] 3R_31557461_SNP [dm6]	T	C	4.559e^-4	0.818	INTRON nyo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9534762	3R_9534762_SNP [dm3] 3R_13709040_SNP [dm6]	C	A	4.564e^-4	0.818	NON_SYNONYMOUS_CODING Adgf-C DOWNSTREAM CG31469 & 2 others
2R	11575711	2R_11575711_SNP [dm3] 2R_15688206_SNP [dm6]	G	T	4.565e^-4	0.818	NON_SYNONYMOUS_CODING Cep89 SPLICE_SITE_REGION Cep89 DOWNSTREAM Ranbp11	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14675772	2R_14675772_SNP [dm3] 2R_18788267_SNP [dm6]	C	G	4.565e^-4	0.818	INTRON CG15080
3R	17850890	3R_17850890_SNP [dm3] 3R_22025168_SNP [dm6]	A	G	4.569e^-4	0.818	SYNONYMOUS_CODING CG6028 DOWNSTREAM mRpL35 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.204e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.07519
In_3R_P	0.09727

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	4.7664	0.0923

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2119 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	3910709	3L_3910709_SNP [dm3] 3L_3910709_SNP [dm6]	G	T	7.992e^-7	0.824	UTR_3_PRIME Eip63F-1 UPSTREAM mge DOWNSTREAM Eip63F-1
3R	24413164	3R_24413164_SNP [dm3] 3R_28587442_SNP [dm6]	C	T	3.224e^-6	0.824	EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	5849474	3L_5849474_SNP [dm3] 3L_5856374_SNP [dm6]	C	T	3.922e^-6	0.824	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	18010104	3L_18010104_SNP [dm3] 3L_18017004_SNP [dm6]	T	G	4.966e^-6	0.824	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
3L	8151400	3L_8151400_SNP [dm3] 3L_8158300_SNP [dm6]	A	T	5.052e^-6	0.824	INTRON CG42445
3R	26841834	3R_26841834_SNP [dm3] 3R_31016112_SNP [dm6]	T	C	5.282e^-6	0.824	INTRON 5-HT7
3L	4391130	3L_4391130_SNP [dm3] 3L_4391130_SNP [dm6]	T	G	5.423e^-6	0.824	NON_SYNONYMOUS_CODING slow	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14184710	3R_14184710_DEL [dm3] 3R_18358988_DEL [dm6]	AA	A	5.538e^-6	0.824	INTRON CG15803
3R	24412989	3R_24412989_SNP [dm3] 3R_28587267_SNP [dm6]	T	C	5.558e^-6	0.824	EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	7589745	2R_7589745_SNP [dm3] 2R_11702240_SNP [dm6]	G	T	6.109e^-6	0.824	SYNONYMOUS_CODING Ir48b
3L	20809588	3L_20809588_SNP [dm3] 3L_20816488_SNP [dm6]	G	A	6.622e^-6	0.824	UTR_5_PRIME Pka-R1 UPSTREAM CG3618 DOWNSTREAM Mst77F INTRON Pka-R1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18645419	3L_18645419_SNP [dm3] 3L_18652319_SNP [dm6]	T	G	7.489e^-6	0.824	INTRON MYPT-75D
3L	18645429	3L_18645429_SNP [dm3] 3L_18652329_SNP [dm6]	A	C	8.498e^-6	0.824	INTRON MYPT-75D
3L	11599333	3L_11599333_SNP [dm3] 3L_11606233_SNP [dm6]	G	A	9.042e^-6	0.824	DOWNSTREAM CG7368 INTRON CG6091
2R	17424409	2R_17424409_SNP [dm3] 2R_21536904_SNP [dm6]	A	G	1.064e^-5	0.824	UTR_3_PRIME CG30287 UPSTREAM CG30286 INTRON Egfr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20232899	3R_20232899_INS [dm3] 3R_24407177_INS [dm6]	C	CCAA	1.077e^-5	0.824	INTRON nAChRalpha1
3L	11599330	3L_11599330_SNP [dm3] 3L_11606230_SNP [dm6]	G	C	1.330e^-5	0.824	DOWNSTREAM CG7368 INTRON CG6091
3L	4537343	3L_4537343_SNP [dm3] 3L_4537343_SNP [dm6]	T	G	1.411e^-5	0.824	NON_SYNONYMOUS_CODING CG11353
3R	24412032	3R_24412032_SNP [dm3] 3R_28586310_SNP [dm6]	C	A	1.555e^-5	0.824	EXON MRE23	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	20231634	3R_20231634_SNP [dm3] 3R_24405912_SNP [dm6]	G	A	1.693e^-5	0.824	INTRON nAChRalpha1
3R	12971257	3R_12971257_SNP [dm3] 3R_17145535_SNP [dm6]	A	C	1.765e^-5	0.824	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3R	12971260	3R_12971260_DEL [dm3] 3R_17145538_DEL [dm6]	AGGTAAGCATCCTA...	G	1.765e^-5	0.824	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3R	14180450	3R_14180450_SNP [dm3] 3R_18354728_SNP [dm6]	C	T	1.841e^-5	0.824	NON_SYNONYMOUS_CODING CG15803	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	14825649	X_14825649_SNP [dm3] X_14931616_SNP [dm6]	C	T	1.861e^-5	0.824	INTRON Flo2
3R	25405876	3R_25405876_SNP [dm3] 3R_29580154_SNP [dm6]	A	G	1.911e^-5	0.824	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	8473149	X_8473149_SNP [dm3] X_8579116_SNP [dm6]	A	G	1.920e^-5	0.824	INTRON CG12065
3R	23338745	3R_23338745_SNP [dm3] 3R_27513023_SNP [dm6]	T	A	1.944e^-5	0.824	INTERGENIC
3R	4606495	3R_4606495_SNP [dm3] 3R_8780773_SNP [dm6]	T	C	1.946e^-5	0.824	UTR_5_PRIME CG33189 UPSTREAM CG33191 & 1 other DOWNSTREAM Pif1A INTRON Pif1B & 1 other	TF binding site mE1_TFBS_cad
3L	4641657	3L_4641657_SNP [dm3] 3L_4641657_SNP [dm6]	A	G	1.992e^-5	0.824	DOWNSTREAM axo INTRON axo
3L	22439138	3L_22439138_SNP [dm3] 3L_22446038_SNP [dm6]	G	A	1.996e^-5	0.824	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	16309372	2L_16309372_SNP [dm3] 2L_16309372_SNP [dm6]	C	G	2.035e^-5	0.824	UTR_3_PRIME cni DOWNSTREAM cni & 1 other
3R	26841839	3R_26841839_SNP [dm3] 3R_31016117_SNP [dm6]	T	A	2.069e^-5	0.824	INTRON 5-HT7
2R	7590443	2R_7590443_SNP [dm3] 2R_11702938_SNP [dm6]	G	A	2.080e^-5	0.824	UPSTREAM Ir48b INTERGENIC
X	9096956	X_9096956_SNP [dm3] X_9202923_SNP [dm6]	C	T	2.129e^-5	0.824	INTERGENIC
2L	8450997	2L_8450997_SNP [dm3] 2L_8450997_SNP [dm6]	T	A	2.179e^-5	0.824	UTR_5_PRIME fu12
X	3792235	X_3792235_SNP [dm3] X_3898202_SNP [dm6]	T	C	2.186e^-5	0.824	INTRON CG42541
2L	698452	2L_698452_SNP [dm3] 2L_698452_SNP [dm6]	C	T	2.207e^-5	0.824	INTRON ds
2L	516236	2L_516236_SNP [dm3] 2L_516236_SNP [dm6]	C	T	2.208e^-5	0.824	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	7646289	2L_7646289_SNP [dm3] 2L_7646289_SNP [dm6]	G	T	2.300e^-5	0.824	DOWNSTREAM Slob INTRON Slob
3L	4274651	3L_4274651_SNP [dm3] 3L_4274651_SNP [dm6]	T	A	2.457e^-5	0.824	INTRON CG1273
2L	8448676	2L_8448676_SNP [dm3] 2L_8448676_SNP [dm6]	G	T	2.474e^-5	0.824	SYNONYMOUS_CODING U26
2L	9770657	2L_9770657_SNP [dm3] 2L_9770657_SNP [dm6]	T	C	2.485e^-5	0.824	DOWNSTREAM ppk16 & 1 other INTRON ppk18
2R	9074877	2R_9074877_SNP [dm3] 2R_13187372_SNP [dm6]	A	T	2.551e^-5	0.824	INTRON seq & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15075556	3L_15075556_SNP [dm3] 3L_15082456_SNP [dm6]	C	T	2.558e^-5	0.824	SYNONYMOUS_CODING cp309
2R	7590353	2R_7590353_SNP [dm3] 2R_11702848_SNP [dm6]	C	T	2.563e^-5	0.824	UPSTREAM Ir48b INTERGENIC
2L	8448106	2L_8448106_SNP [dm3] 2L_8448106_SNP [dm6]	G	A	2.576e^-5	0.824	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7590024	2R_7590024_SNP [dm3] 2R_11702519_SNP [dm6]	G	A	2.685e^-5	0.824	UPSTREAM Ir48b INTERGENIC
X	8834016	X_8834016_SNP [dm3] X_8939983_SNP [dm6]	G	A	2.721e^-5	0.824	INTRON rdgA
2L	588413	2L_588413_SNP [dm3] 2L_588413_SNP [dm6]	T	C	2.725e^-5	0.824	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
3R	9819633	3R_9819633_SNP [dm3] 3R_13993911_SNP [dm6]	A	G	2.733e^-5	0.824	INTRON rdx
2L	7707923	2L_7707923_SNP [dm3] 2L_7707923_SNP [dm6]	A	G	2.736e^-5	0.824	SYNONYMOUS_CODING Tep3 DOWNSTREAM CR44990
3L	1420838	3L_1420838_SNP [dm3] 3L_1420838_SNP [dm6]	G	T	2.892e^-5	0.824	DOWNSTREAM CG9173 INTRON Ptp61F
3L	18010841	3L_18010841_DEL [dm3] 3L_18017741_DEL [dm6]	CAGTAAGAGCTCAC...	C	3.022e^-5	0.824	INTRON Eip75B
2L	2797905	2L_2797905_SNP [dm3] 2L_2797905_SNP [dm6]	A	C	3.023e^-5	0.824	INTRON Syt1 EXON CR43821	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	3154459	2L_3154459_SNP [dm3] 2L_3154459_SNP [dm6]	A	T	3.024e^-5	0.824	INTRON Mad
3L	4443062	3L_4443062_SNP [dm3] 3L_4443062_SNP [dm6]	T	A	3.068e^-5	0.824	INTERGENIC
2L	4178443	2L_4178443_SNP [dm3] 2L_4178443_SNP [dm6]	G	A	3.139e^-5	0.824	INTERGENIC
2L	516246	2L_516246_SNP [dm3] 2L_516246_SNP [dm6]	T	C	3.150e^-5	0.824	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	588419	2L_588419_SNP [dm3] 2L_588419_SNP [dm6]	T	A	3.169e^-5	0.824	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
3L	5726721	3L_5726721_INS [dm3] 3L_5733621_INS [dm6]	T	TG	3.196e^-5	0.824	INTRON sif
3R	17685147	3R_17685147_SNP [dm3] 3R_21859425_SNP [dm6]	T	A	3.315e^-5	0.824	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	11275275	3R_11275275_SNP [dm3] 3R_15449553_SNP [dm6]	C	A	3.374e^-5	0.824	NON_SYNONYMOUS_CODING AdamTS-A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17732025	3R_17732025_SNP [dm3] 3R_21906303_SNP [dm6]	C	G	3.444e^-5	0.824	UTR_3_PRIME CG6678
X	10459766	X_10459766_SNP [dm3] X_10565733_SNP [dm6]	G	C	3.447e^-5	0.824	DOWNSTREAM CG15296 INTRON spri
X	11157328	X_11157328_SNP [dm3] X_11263295_SNP [dm6]	C	T	3.502e^-5	0.824	INTRON CG44422
3L	13142617	3L_13142617_SNP [dm3] 3L_13149517_SNP [dm6]	G	A	3.542e^-5	0.824	INTERGENIC
3L	9245944	3L_9245944_SNP [dm3] 3L_9252844_SNP [dm6]	T	C	3.630e^-5	0.824	INTRON GluRIB
2L	3719764	2L_3719764_SNP [dm3] 2L_3719764_SNP [dm6]	T	A	3.632e^-5	0.824	INTRON Shaw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10960679	3L_10960679_DEL [dm3] 3L_10967579_DEL [dm6]	ACGCCATGGTCATGGCATGA...	A	3.709e^-5	0.824	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
X	13215523	X_13215523_SNP [dm3] X_13321490_SNP [dm6]	T	G	3.793e^-5	0.824	INTRON IP3K2
3L	4533938	3L_4533938_SNP [dm3] 3L_4533938_SNP [dm6]	A	C	3.857e^-5	0.824	INTRON CG11353
3L	11922753	3L_11922753_SNP [dm3] 3L_11929653_SNP [dm6]	C	T	4.209e^-5	0.824	INTRON CG44837 & 1 other
3R	24251474	3R_24251474_SNP [dm3] 3R_28425752_SNP [dm6]	A	G	4.251e^-5	0.824	INTRON beat-VI
2R	18418701	2R_18418701_SNP [dm3] 2R_22531196_SNP [dm6]	A	C	4.291e^-5	0.824	INTRON px
2R	18418702	2R_18418702_SNP [dm3] 2R_22531197_SNP [dm6]	C	A	4.291e^-5	0.824	INTRON px
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	4.323e^-5	0.824	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22054321	3R_22054321_SNP [dm3] 3R_26228599_SNP [dm6]	C	T	4.352e^-5	0.824	INTERGENIC
3L	10960574	3L_10960574_SNP [dm3] 3L_10967474_SNP [dm6]	T	C	4.376e^-5	0.824	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	2737086	3R_2737086_SNP [dm3] 3R_6911364_SNP [dm6]	C	T	4.425e^-5	0.824	INTRON Antp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	1932212	3L_1932212_SNP [dm3] 3L_1932212_SNP [dm6]	A	T	4.462e^-5	0.824	INTRON Dbx	TF binding site mE1_TFBS_chinmo
3L	3070578	3L_3070578_SNP [dm3] 3L_3070578_SNP [dm6]	T	C	4.489e^-5	0.824	UTR_5_PRIME CG32486 UPSTREAM CG11486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	11322539	3R_11322539_DEL [dm3] 3R_15496817_DEL [dm6]	TC	T	4.495e^-5	0.824	INTERGENIC
3L	11180875	3L_11180875_SNP [dm3] 3L_11187775_SNP [dm6]	A	T	4.531e^-5	0.824	INTRON GlcAT-P
3L	18134099	3L_18134099_SNP [dm3] 3L_18140999_SNP [dm6]	T	A	4.572e^-5	0.824	INTRON gk
2L	18982355	2L_18982355_SNP [dm3] 2L_18982355_SNP [dm6]	T	C	4.629e^-5	0.824	INTRON Swip-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	4378480	3L_4378480_SNP [dm3] 3L_4378480_SNP [dm6]	T	C	4.823e^-5	0.824	UPSTREAM CR44360 INTRON DopEcR
3L	19399612	3L_19399612_SNP [dm3] 3L_19406512_SNP [dm6]	A	C	4.832e^-5	0.824	DOWNSTREAM CR43966 INTRON CG32206
3L	11168317	3L_11168317_SNP [dm3] 3L_11175217_SNP [dm6]	A	T	4.843e^-5	0.824	INTRON CG14142
X	7622623	X_7622623_SNP [dm3] X_7728590_SNP [dm6]	G	A	4.848e^-5	0.824	UPSTREAM CG12155 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	16811509	X_16811509_SNP [dm3] X_16917476_SNP [dm6]	C	A	4.873e^-5	0.824	INTRON CG4928
3R	26359965	3R_26359965_SNP [dm3] 3R_30534243_SNP [dm6]	A	G	5.056e^-5	0.824	INTRON tmod
3L	15000891	3L_15000891_INS [dm3] 3L_15007791_INS [dm6]	T	TAGTTGT	5.073e^-5	0.824	INTRON Reck
X	6890537	X_6890537_SNP [dm3] X_6996504_SNP [dm6]	T	A	5.092e^-5	0.824	INTRON Inx7 EXON CR43837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	516834	2L_516834_SNP [dm3] 2L_516834_SNP [dm6]	C	G	5.108e^-5	0.824	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	14841983	X_14841983_SNP [dm3] X_14947950_SNP [dm6]	A	G	5.156e^-5	0.824	INTRON pdgy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	22419832	3L_22419832_SNP [dm3] 3L_22426732_SNP [dm6]	A	G	5.238e^-5	0.824	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	19424426	3L_19424426_SNP [dm3] 3L_19431326_SNP [dm6]	A	T	5.253e^-5	0.824	INTERGENIC
X	9816859	X_9816859_DEL [dm3] X_9922826_DEL [dm6]	CC	C	5.257e^-5	0.824	INTERGENIC
3L	16531080	3L_16531080_SNP [dm3] 3L_16537980_SNP [dm6]	A	G	5.267e^-5	0.824	INTRON CG43373
3R	22054266	3R_22054266_SNP [dm3] 3R_26228544_SNP [dm6]	C	T	5.269e^-5	0.824	INTERGENIC
3L	5334859	3L_5334859_SNP [dm3] 3L_5341759_SNP [dm6]	C	T	5.271e^-5	0.824	UPSTREAM tRNA:S7:64D INTERGENIC
2L	8044715	2L_8044715_SNP [dm3] 2L_8044715_SNP [dm6]	A	G	5.281e^-5	0.824	SYNONYMOUS_CODING CG7466 INTRON CG7466
3L	3070898	3L_3070898_SNP [dm3] 3L_3070898_SNP [dm6]	A	G	5.285e^-5	0.824	UPSTREAM CG11486 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	11246641	3R_11246641_INS [dm3] 3R_15420919_INS [dm6]	C	CAG	5.427e^-5	0.824	DOWNSTREAM CG6118 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
3L	4821645	3L_4821645_SNP [dm3] 3L_4821645_SNP [dm6]	C	G	5.495e^-5	0.824	INTRON Dhc64C
3L	4821647	3L_4821647_SNP [dm3] 3L_4821647_SNP [dm6]	A	G	5.495e^-5	0.824	INTRON Dhc64C
3L	6059888	3L_6059888_SNP [dm3] 3L_6066788_SNP [dm6]	T	C	5.499e^-5	0.824	SYNONYMOUS_CODING CG42269	TF binding site mE1_TFBS_chinmo
2L	516240	2L_516240_SNP [dm3] 2L_516240_SNP [dm6]	C	T	5.541e^-5	0.824	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	18647974	3L_18647974_DEL [dm3] 3L_18654874_DEL [dm6]	GG	G	5.597e^-5	0.824	INTRON MYPT-75D
2L	18980579	2L_18980579_SNP [dm3] 2L_18980579_SNP [dm6]	T	C	5.794e^-5	0.824	INTRON Swip-1
3L	3072619	3L_3072619_SNP [dm3] 3L_3072619_SNP [dm6]	A	T	5.801e^-5	0.824	UTR_5_PRIME CG11486 UPSTREAM CG11486 INTRON CG11486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	10308270	3R_10308270_SNP [dm3] 3R_14482548_SNP [dm6]	T	A	5.880e^-5	0.824	UPSTREAM cv-c INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15066533	2R_15066533_SNP [dm3] 2R_19179028_SNP [dm6]	C	T	5.903e^-5	0.824	DOWNSTREAM CG10737 INTRON hppy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	588397	2L_588397_SNP [dm3] 2L_588397_SNP [dm6]	G	C	5.942e^-5	0.824	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
3L	4289109	3L_4289109_SNP [dm3] 3L_4289109_SNP [dm6]	G	A	5.945e^-5	0.824	SYNONYMOUS_CODING Hexo1 DOWNSTREAM TfIIEbeta	TF binding site mE1_TFBS_Trl
3R	8480553	3R_8480553_SNP [dm3] 3R_12654831_SNP [dm6]	T	C	6.086e^-5	0.824	UTR_5_PRIME CG6225 INTRON CG6225	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18253510	X_18253510_SNP [dm3] X_18359477_SNP [dm6]	C	T	6.092e^-5	0.824	SYNONYMOUS_CODING CG6106
3L	14561384	3L_14561384_SNP [dm3] 3L_14568284_SNP [dm6]	G	A	6.140e^-5	0.824	DOWNSTREAM CG42758 INTERGENIC
2R	4075788	2R_4075788_SNP [dm3] 2R_8188283_SNP [dm6]	A	T	6.224e^-5	0.824	INTRON LRP1
2R	12277004	2R_12277004_SNP [dm3] 2R_16389499_SNP [dm6]	G	A	6.324e^-5	0.824	INTRON Sema-2b
X	17920827	X_17920827_SNP [dm3] X_18026794_SNP [dm6]	G	A	6.363e^-5	0.824	INTRON Sh & 1 other
3L	14561228	3L_14561228_SNP [dm3] 3L_14568128_SNP [dm6]	T	G	6.416e^-5	0.824	UTR_3_PRIME CG42758
2R	17344735	2R_17344735_SNP [dm3] 2R_21457230_SNP [dm6]	C	T	6.561e^-5	0.824	INTRON Sdc
2L	563223	2L_563223_SNP [dm3] 2L_563223_SNP [dm6]	T	C	6.640e^-5	0.824	START_GAINED CG11835 UTR_5_PRIME CG11835 UPSTREAM CG2794 INTRON CG11835	TF binding site mE1_TFBS_chinmo
2L	588357	2L_588357_SNP [dm3] 2L_588357_SNP [dm6]	A	T	6.662e^-5	0.824	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11892130	3L_11892130_SNP [dm3] 3L_11899030_SNP [dm6]	A	G	6.664e^-5	0.824	INTRON CG44837 & 1 other
2L	588302	2L_588302_SNP [dm3] 2L_588302_SNP [dm6]	A	C	6.668e^-5	0.824	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7711441	2L_7711441_SNP [dm3] 2L_7711441_SNP [dm6]	C	G	6.691e^-5	0.824	UPSTREAM CR44990 & 2 others DOWNSTREAM Tep3 INTRON Ntl
2L	3720775	2L_3720775_SNP [dm3] 2L_3720775_SNP [dm6]	C	T	6.735e^-5	0.824	UPSTREAM Shaw INTRON Shaw
X	9096944	X_9096944_SNP [dm3] X_9202911_SNP [dm6]	G	T	6.751e^-5	0.824	INTERGENIC
2L	517821	2L_517821_SNP [dm3] 2L_517821_SNP [dm6]	A	G	6.827e^-5	0.824	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
X	9097001	X_9097001_SNP [dm3] X_9202968_SNP [dm6]	G	T	6.894e^-5	0.824	INTERGENIC
2L	7646312	2L_7646312_SNP [dm3] 2L_7646312_SNP [dm6]	A	C	6.936e^-5	0.824	DOWNSTREAM Slob INTRON Slob
2R	6658331	2R_6658331_INS [dm3] 2R_10770826_INS [dm6]	A	ATAATTATGACCACAATGAC...	6.993e^-5	0.824	INTRON CG33144
3L	14561293	3L_14561293_SNP [dm3] 3L_14568193_SNP [dm6]	T	C	7.013e^-5	0.824	DOWNSTREAM CG42758 INTERGENIC
3L	22332078	3L_22332078_SNP [dm3] 3L_22338978_SNP [dm6]	C	T	7.016e^-5	0.824	INTRON Ten-m	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13163180	3L_13163180_SNP [dm3] 3L_13170080_SNP [dm6]	C	G	7.051e^-5	0.824	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_Kr
2R	14074034	2R_14074034_SNP [dm3] 2R_18186529_SNP [dm6]	C	T	7.071e^-5	0.824	SYNONYMOUS_CODING CG33958
2R	14560080	2R_14560080_SNP [dm3] 2R_18672575_SNP [dm6]	C	A	7.075e^-5	0.824	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16426071	2R_16426071_SNP [dm3] 2R_20538566_SNP [dm6]	C	A	7.169e^-5	0.824	DOWNSTREAM CG13427 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14949888	3L_14949888_SNP [dm3] 3L_14956788_SNP [dm6]	C	T	7.198e^-5	0.824	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	3307363	3L_3307363_SNP [dm3] 3L_3307363_SNP [dm6]	A	T	7.201e^-5	0.824	UPSTREAM ZnT63C INTRON ZnT63C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4924712	3L_4924712_SNP [dm3] 3L_4924712_SNP [dm6]	C	A	7.226e^-5	0.824	INTERGENIC
3R	22054251	3R_22054251_SNP [dm3] 3R_26228529_SNP [dm6]	A	G	7.260e^-5	0.824	INTERGENIC
X	18253604	X_18253604_SNP [dm3] X_18359571_SNP [dm6]	C	T	7.313e^-5	0.824	INTRON CG6106
3L	4011465	3L_4011465_SNP [dm3] 3L_4011465_SNP [dm6]	A	G	7.356e^-5	0.824	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	666246	3L_666246_SNP [dm3] 3L_666246_SNP [dm6]	C	T	7.371e^-5	0.824	INTERGENIC
2R	7589808	2R_7589808_SNP [dm3] 2R_11702303_SNP [dm6]	G	A	7.414e^-5	0.824	SYNONYMOUS_CODING Ir48b
X	16811548	X_16811548_SNP [dm3] X_16917515_SNP [dm6]	T	A	7.472e^-5	0.824	INTRON CG4928
2R	11948202	2R_11948202_SNP [dm3] 2R_16060697_SNP [dm6]	T	G	7.502e^-5	0.824	UTR_3_PRIME CG8405
2R	16425872	2R_16425872_SNP [dm3] 2R_20538367_SNP [dm6]	T	C	7.518e^-5	0.824	DOWNSTREAM CG13427 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
3L	20806649	3L_20806649_SNP [dm3] 3L_20813549_SNP [dm6]	A	C	7.569e^-5	0.824	NON_SYNONYMOUS_CODING CG3618 DOWNSTREAM CG3680
2R	6588312	2R_6588312_SNP [dm3] 2R_10700807_SNP [dm6]	G	C	7.597e^-5	0.824	INTRON stan
3R	25119684	3R_25119684_SNP [dm3] 3R_29293962_SNP [dm6]	T	C	7.734e^-5	0.824	UTR_3_PRIME CG14506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	9097013	X_9097013_SNP [dm3] X_9202980_SNP [dm6]	C	T	7.874e^-5	0.824	INTERGENIC
3L	18646231	3L_18646231_SNP [dm3] 3L_18653131_SNP [dm6]	C	T	7.880e^-5	0.824	INTRON MYPT-75D
X	8473139	X_8473139_SNP [dm3] X_8579106_SNP [dm6]	A	T	7.884e^-5	0.824	INTRON CG12065
X	14042755	X_14042755_INS [dm3] X_14148722_INS [dm6]	A	AGAA	7.891e^-5	0.824	INTERGENIC
3R	11246805	3R_11246805_DEL [dm3] 3R_15421083_DEL [dm6]	TT	A	7.942e^-5	0.824	DOWNSTREAM CG6118 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
2L	21055222	2L_21055222_SNP [dm3] 2L_21055222_SNP [dm6]	A	T	7.957e^-5	0.824	NON_SYNONYMOUS_CODING Itgbetanu	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1176201	2L_1176201_SNP [dm3] 2L_1176201_SNP [dm6]	T	C	8.099e^-5	0.824	SYNONYMOUS_CODING CG4887	TF binding site BDTNP1_TFBS_sna
3L	20809221	3L_20809221_SNP [dm3] 3L_20816121_SNP [dm6]	T	A	8.143e^-5	0.824	UTR_5_PRIME Pka-R1 UPSTREAM CG3618 DOWNSTREAM Mst77F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	22435648	3L_22435648_SNP [dm3] 3L_22442548_SNP [dm6]	A	C	8.179e^-5	0.824	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1102872	2L_1102872_SNP [dm3] 2L_1102872_SNP [dm6]	A	T	8.196e^-5	0.824	UPSTREAM CG4629 DOWNSTREAM mtRNApol INTERGENIC
3L	4283458	3L_4283458_SNP [dm3] 3L_4283458_SNP [dm6]	G	A	8.224e^-5	0.824	SYNONYMOUS_CODING srw UPSTREAM CG11583 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6493334	2L_6493334_SNP [dm3] 2L_6493334_SNP [dm6]	A	G	8.262e^-5	0.824	SYNONYMOUS_CODING CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8450506	2L_8450506_SNP [dm3] 2L_8450506_SNP [dm6]	T	G	8.287e^-5	0.824	SYNONYMOUS_CODING fu12 UPSTREAM U26	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8450632	2L_8450632_SNP [dm3] 2L_8450632_SNP [dm6]	C	T	8.287e^-5	0.824	SYNONYMOUS_CODING fu12	TF binding site mE1_TFBS_HSA
3L	3287091	3L_3287091_SNP [dm3] 3L_3287091_SNP [dm6]	G	A	8.358e^-5	0.824	SYNONYMOUS_CODING CG12017	TF binding site mE1_TFBS_cad
3L	6059894	3L_6059894_SNP [dm3] 3L_6066794_SNP [dm6]	G	T	8.393e^-5	0.824	SYNONYMOUS_CODING CG42269	TF binding site mE1_TFBS_chinmo
3R	25808279	3R_25808279_DEL [dm3] 3R_29982557_DEL [dm6]	ACTCCACTGCA...	A	8.411e^-5	0.824	UPSTREAM CG7896 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	8447265	2L_8447265_SNP [dm3] 2L_8447265_SNP [dm6]	A	G	8.423e^-5	0.824	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	5552097	X_5552097_SNP [dm3] X_5658064_SNP [dm6]	C	T	8.621e^-5	0.824	INTRON CG42265
3L	4289237	3L_4289237_INS [dm3] 3L_4289237_INS [dm6]	C	CC	8.640e^-5	0.824	SPLICE_SITE_REGION Hexo1 DOWNSTREAM TfIIEbeta INTRON Hexo1	TF binding site mE1_TFBS_chinmo
3L	10016606	3L_10016606_SNP [dm3] 3L_10023506_SNP [dm6]	G	A	8.671e^-5	0.824	INTRON dpr6
3L	5651486	3L_5651486_SNP [dm3] 3L_5658386_SNP [dm6]	A	G	8.672e^-5	0.824	UTR_5_PRIME sif INTRON sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11621381	3L_11621381_SNP [dm3] 3L_11628281_SNP [dm6]	G	T	8.675e^-5	0.824	DOWNSTREAM PCID2 INTRON CG18815	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	1645292	2L_1645292_SNP [dm3] 2L_1645292_SNP [dm6]	G	A	8.695e^-5	0.824	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	19522029	2L_19522029_SNP [dm3] 2L_19522029_SNP [dm6]	C	T	8.703e^-5	0.824	SYNONYMOUS_CODING CG10132	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14949865	3L_14949865_SNP [dm3] 3L_14956765_SNP [dm6]	C	G	8.719e^-5	0.824	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	9292136	2R_9292136_SNP [dm3] 2R_13404631_SNP [dm6]	A	G	8.726e^-5	0.824	INTERGENIC
3L	22313048	3L_22313048_DEL [dm3] 3L_22319948_DEL [dm6]	TGCCTCAGAGTTGGAT...	T	8.734e^-5	0.824	INTRON Ten-m
X	2838349	X_2838349_SNP [dm3] X_2944316_SNP [dm6]	A	G	8.754e^-5	0.824	SYNONYMOUS_CODING CG14422 INTRON kirre	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_cad mE1_TFBS_HSA
X	7634478	X_7634478_SNP [dm3] X_7740445_SNP [dm6]	G	T	8.770e^-5	0.824	DOWNSTREAM Tom40 INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	25119896	3R_25119896_SNP [dm3] 3R_29294174_SNP [dm6]	G	A	8.774e^-5	0.824	UTR_3_PRIME CG14506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16029424	2L_16029424_SNP [dm3] 2L_16029424_SNP [dm6]	G	A	8.794e^-5	0.824	INTRON beat-Ic
3L	19399611	3L_19399611_SNP [dm3] 3L_19406511_SNP [dm6]	A	G	8.807e^-5	0.824	DOWNSTREAM CR43966 INTRON CG32206
3L	5648677	3L_5648677_SNP [dm3] 3L_5655577_SNP [dm6]	A	G	8.821e^-5	0.824	INTRON lin-28	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	957168	3L_957168_DEL [dm3] 3L_957168_DEL [dm6]	TT	T	8.854e^-5	0.824	INTRON Glut1
2L	3119891	2L_3119891_SNP [dm3] 2L_3119891_SNP [dm6]	A	G	8.865e^-5	0.824	INTRON toc
3L	13548509	3L_13548509_SNP [dm3] 3L_13555409_SNP [dm6]	T	C	9.015e^-5	0.824	INTRON bru-3
3L	1326136	3L_1326136_SNP [dm3] 3L_1326136_SNP [dm6]	C	T	9.016e^-5	0.824	SYNONYMOUS_CODING Myo61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27146681	3R_27146681_SNP [dm3] 3R_31320959_SNP [dm6]	C	A	9.032e^-5	0.824	INTRON CG34347
3R	22160103	3R_22160103_SNP [dm3] 3R_26334381_SNP [dm6]	A	T	9.058e^-5	0.824	INTRON CG33970
2L	13760897	2L_13760897_SNP [dm3] 2L_13760897_SNP [dm6]	T	A	9.077e^-5	0.824	INTRON TM9SF4
3L	677700	3L_677700_SNP [dm3] 3L_677700_SNP [dm6]	T	A	9.139e^-5	0.824	DOWNSTREAM CG17129 INTERGENIC
3L	3868725	3L_3868725_SNP [dm3] 3L_3868725_SNP [dm6]	C	A	9.144e^-5	0.824	INTERGENIC
3R	18478641	3R_18478641_SNP [dm3] 3R_22652919_SNP [dm6]	G	T	9.218e^-5	0.824	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2645611	3L_2645611_SNP [dm3] 3L_2645611_SNP [dm6]	C	A	9.249e^-5	0.824	INTRON CG1143	TF binding site mE1_TFBS_cad
3L	4344929	3L_4344929_SNP [dm3] 3L_4344929_SNP [dm6]	C	G	9.307e^-5	0.824	UPSTREAM CR45156 INTRON Cip4
3R	11322549	3R_11322549_SNP [dm3] 3R_15496827_SNP [dm6]	T	C	9.344e^-5	0.824	INTERGENIC
2R	12278778	2R_12278778_SNP [dm3] 2R_16391273_SNP [dm6]	G	A	9.348e^-5	0.824	INTRON Sema-2b	TF binding site mE1_TFBS_chinmo
3L	4647084	3L_4647084_INS [dm3] 3L_4647084_INS [dm6]	T	TC	9.371e^-5	0.824	INTRON axo
3L	22476226	3L_22476226_SNP [dm3] 3L_22483126_SNP [dm6]	C	T	9.384e^-5	0.824	INTERGENIC
2L	8447278	2L_8447278_SNP [dm3] 2L_8447278_SNP [dm6]	T	G	9.385e^-5	0.824	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	8448070	2L_8448070_SNP [dm3] 2L_8448070_SNP [dm6]	C	T	9.510e^-5	0.824	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3268190	2L_3268190_SNP [dm3] 2L_3268190_SNP [dm6]	G	C	9.513e^-5	0.824	UPSTREAM CR44484 INTERGENIC
2R	17278193	2R_17278193_SNP [dm3] 2R_21390688_SNP [dm6]	G	A	9.521e^-5	0.824	NON_SYNONYMOUS_CODING Acox57D-d	TF binding site mE1_TFBS_cad
3R	22054172	3R_22054172_SNP [dm3] 3R_26228450_SNP [dm6]	G	A	9.544e^-5	0.824	INTERGENIC
3L	3521274	3L_3521274_SNP [dm3] 3L_3521274_SNP [dm6]	A	C	9.546e^-5	0.824	INTRON Eip63E
X	4985031	X_4985031_SNP [dm3] X_5090998_SNP [dm6]	G	T	9.564e^-5	0.824	INTRON rg & 1 other
3L	4641729	3L_4641729_SNP [dm3] 3L_4641729_SNP [dm6]	A	G	9.627e^-5	0.824	DOWNSTREAM axo INTRON axo
3R	5363515	3R_5363515_SNP [dm3] 3R_9537793_SNP [dm6]	T	G	9.656e^-5	0.824	UTR_3_PRIME mura DOWNSTREAM mura
3R	22859653	3R_22859653_SNP [dm3] 3R_27033931_SNP [dm6]	G	A	9.671e^-5	0.824	INTRON RYa-R	TF binding site BDTNP1_TFBS_da
2R	4075789	2R_4075789_SNP [dm3] 2R_8188284_SNP [dm6]	C	T	9.688e^-5	0.824	INTRON LRP1
3L	17442373	3L_17442373_SNP [dm3] 3L_17449273_SNP [dm6]	G	A	9.692e^-5	0.824	INTRON CG18265	TF binding site mE1_TFBS_cad
2L	3871457	2L_3871457_INS [dm3] 2L_3871457_INS [dm6]	T	CAACAG	9.717e^-5	0.824	UTR_3_PRIME CG31957 DOWNSTREAM CG31957 & 1 other	TF binding site mE1_TFBS_sens
2L	2168999	2L_2168999_SNP [dm3] 2L_2168999_SNP [dm6]	A	G	9.747e^-5	0.824	INTRON aop	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	588252	2L_588252_SNP [dm3] 2L_588252_SNP [dm6]	C	A	9.941e^-5	0.824	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4290709	3L_4290709_SNP [dm3] 3L_4290709_SNP [dm6]	C	A	9.949e^-5	0.824	SYNONYMOUS_CODING Hexo1 DOWNSTREAM CG15012	TF binding site mE1_TFBS_sens
3L	1709859	3L_1709859_SNP [dm3] 3L_1709859_SNP [dm6]	G	A	9.978e^-5	0.824	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	6156289	2R_6156289_SNP [dm3] 2R_10268784_SNP [dm6]	A	T	1.016e^-4	0.824	NON_SYNONYMOUS_CODING CG12910 UPSTREAM CAP	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7707920	2L_7707920_SNP [dm3] 2L_7707920_SNP [dm6]	C	T	1.020e^-4	0.824	SYNONYMOUS_CODING Tep3 DOWNSTREAM CR44990
3L	2438232	3L_2438232_SNP [dm3] 3L_2438232_SNP [dm6]	A	C	1.022e^-4	0.824	INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	25526173	3R_25526173_SNP [dm3] 3R_29700451_SNP [dm6]	G	T	1.032e^-4	0.824	INTERGENIC
3L	9412062	3L_9412062_SNP [dm3] 3L_9418962_SNP [dm6]	G	A	1.046e^-4	0.824	SYNONYMOUS_CODING CG3967	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3L	7896346	3L_7896346_MNP [dm3] 3L_7903246_MNP [dm6]	TCT	AAA	1.050e^-4	0.824	UTR_5_PRIME pbl INTRON pbl
3L	5334874	3L_5334874_INS [dm3] 3L_5341774_INS [dm6]	T	TA	1.051e^-4	0.824	UPSTREAM tRNA:S7:64D INTERGENIC
2L	17631967	2L_17631967_SNP [dm3] 2L_17631967_SNP [dm6]	C	T	1.053e^-4	0.824	INTERGENIC
3L	1008713	3L_1008713_SNP [dm3] 3L_1008713_SNP [dm6]	T	A	1.062e^-4	0.824	UPSTREAM trio INTRON trio
2R	7590315	2R_7590315_SNP [dm3] 2R_11702810_SNP [dm6]	A	G	1.063e^-4	0.824	UPSTREAM Ir48b INTERGENIC
3L	4443089	3L_4443089_SNP [dm3] 3L_4443089_SNP [dm6]	A	G	1.071e^-4	0.824	INTERGENIC
3L	4635986	3L_4635986_SNP [dm3] 3L_4635986_SNP [dm6]	C	G	1.072e^-4	0.824	DOWNSTREAM axo INTRON axo	TF binding site mE1_TFBS_hkb
3R	19595307	3R_19595307_SNP [dm3] 3R_23769585_SNP [dm6]	G	A	1.074e^-4	0.824	SYNONYMOUS_CODING tst DOWNSTREAM CG10375
3R	13005823	3R_13005823_SNP [dm3] 3R_17180101_SNP [dm6]	C	T	1.078e^-4	0.824	INTRON Mur89F
2R	17274994	2R_17274994_SNP [dm3] 2R_21387489_SNP [dm6]	A	T	1.078e^-4	0.824	INTRON Acox57D-p	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17423240	2R_17423240_SNP [dm3] 2R_21535735_SNP [dm6]	T	C	1.084e^-4	0.824	UTR_3_PRIME CG30286 INTRON Egfr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	2645600	3L_2645600_SNP [dm3] 3L_2645600_SNP [dm6]	A	T	1.088e^-4	0.824	INTRON CG1143	TF binding site mE1_TFBS_cad
3R	24413959	3R_24413959_DEL [dm3] 3R_28588237_DEL [dm6]	ACAAA	A	1.092e^-4	0.824	DOWNSTREAM MRE23 EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	1767715	X_1767715_SNP [dm3] X_1873682_SNP [dm6]	A	T	1.093e^-4	0.824	UPSTREAM Vps26 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	22187954	3L_22187954_SNP [dm3] 3L_22194854_SNP [dm6]	G	A	1.097e^-4	0.824	INTRON olf413	TF binding site mE1_TFBS_HSA
2L	1102915	2L_1102915_SNP [dm3] 2L_1102915_SNP [dm6]	T	G	1.099e^-4	0.824	UPSTREAM CG4629 DOWNSTREAM mtRNApol INTERGENIC
3R	24412419	3R_24412419_SNP [dm3] 3R_28586697_SNP [dm6]	G	A	1.105e^-4	0.824	EXON MRE23	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
3L	8472207	3L_8472207_SNP [dm3] 3L_8479107_SNP [dm6]	T	C	1.105e^-4	0.824	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25216403	3R_25216403_SNP [dm3] 3R_29390681_SNP [dm6]	A	G	1.110e^-4	0.824	INTRON Ptp99A
X	18252756	X_18252756_INS [dm3] X_18358723_INS [dm6]	A	ACATA	1.116e^-4	0.824	UPSTREAM CG6106 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	20232911	3R_20232911_SNP [dm3] 3R_24407189_SNP [dm6]	G	C	1.117e^-4	0.824	INTRON nAChRalpha1
X	5598662	X_5598662_SNP [dm3] X_5704629_SNP [dm6]	C	T	1.119e^-4	0.824	SYNONYMOUS_CODING CG4096	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16889961	3R_16889961_SNP [dm3] 3R_21064239_SNP [dm6]	A	G	1.119e^-4	0.824	INTRON Cortactin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	16309371	2L_16309371_SNP [dm3] 2L_16309371_SNP [dm6]	G	A	1.123e^-4	0.824	UTR_3_PRIME cni DOWNSTREAM cni & 1 other
3L	14560642	3L_14560642_SNP [dm3] 3L_14567542_SNP [dm6]	C	A	1.124e^-4	0.824	INTRON CG42758
3L	957182	3L_957182_SNP [dm3] 3L_957182_SNP [dm6]	A	T	1.133e^-4	0.824	INTRON Glut1
2R	7590116	2R_7590116_DEL [dm3] 2R_11702611_DEL [dm6]	CC	C	1.146e^-4	0.824	UPSTREAM Ir48b INTERGENIC
X	20227733	X_20227733_SNP [dm3] X_20356706_SNP [dm6]	C	T	1.152e^-4	0.824	INTERGENIC
3L	10759192	3L_10759192_SNP [dm3] 3L_10766092_SNP [dm6]	T	A	1.153e^-4	0.824	INTERGENIC
X	5853280	X_5853280_SNP [dm3] X_5959247_SNP [dm6]	A	T	1.173e^-4	0.824	NON_SYNONYMOUS_CODING fs_1_M3 DOWNSTREAM CG6067	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10016576	3L_10016576_SNP [dm3] 3L_10023476_SNP [dm6]	T	G	1.177e^-4	0.824	INTRON dpr6
2L	16538619	2L_16538619_SNP [dm3] 2L_16538619_SNP [dm6]	G	A	1.177e^-4	0.824	INTERGENIC
X	9459153	X_9459153_SNP [dm3] X_9565120_SNP [dm6]	T	G	1.184e^-4	0.824	SYNONYMOUS_CODING Cubn	TF binding site mE1_TFBS_HSA
3R	12188898	3R_12188898_SNP [dm3] 3R_16363176_SNP [dm6]	G	C	1.188e^-4	0.824	INTRON CG14880
2R	7589784	2R_7589784_SNP [dm3] 2R_11702279_SNP [dm6]	T	G	1.191e^-4	0.824	SYNONYMOUS_CODING Ir48b
2R	7590314	2R_7590314_SNP [dm3] 2R_11702809_SNP [dm6]	C	T	1.193e^-4	0.824	UPSTREAM Ir48b INTERGENIC
2L	8448607	2L_8448607_SNP [dm3] 2L_8448607_SNP [dm6]	A	C	1.198e^-4	0.824	SYNONYMOUS_CODING U26
3L	3014246	3L_3014246_SNP [dm3] 3L_3014246_SNP [dm6]	T	A	1.200e^-4	0.824	DOWNSTREAM CG32488 INTERGENIC
3L	4290271	3L_4290271_SNP [dm3] 3L_4290271_SNP [dm6]	C	A	1.200e^-4	0.824	SYNONYMOUS_CODING Hexo1 DOWNSTREAM CG15012	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	148969	2R_148969_SNP [dm3] 2R_4261464_SNP [dm6]	C	A	1.216e^-4	0.824	INTERGENIC
3R	25121962	3R_25121962_SNP [dm3] 3R_29296240_SNP [dm6]	G	A	1.221e^-4	0.824	NON_SYNONYMOUS_CODING CG14506
2L	16290098	2L_16290098_SNP [dm3] 2L_16290098_SNP [dm6]	G	A	1.226e^-4	0.824	SYNONYMOUS_CODING pkaap	TF binding site mE1_TFBS_sens
X	14844743	X_14844743_SNP [dm3] X_14950710_SNP [dm6]	A	C	1.232e^-4	0.824	UTR_5_PRIME pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	1728302	X_1728302_SNP [dm3] X_1834269_SNP [dm6]	A	C	1.234e^-4	0.824	INTRON CG42666
3L	2426682	3L_2426682_SNP [dm3] 3L_2426682_SNP [dm6]	T	G	1.246e^-4	0.824	INTRON CG45186
X	21160839	X_21160839_SNP [dm3] X_21289812_SNP [dm6]	T	C	1.252e^-4	0.824	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14561733	3L_14561733_SNP [dm3] 3L_14568633_SNP [dm6]	G	T	1.254e^-4	0.824	DOWNSTREAM CG42758 INTERGENIC
2L	14956379	2L_14956379_SNP [dm3] 2L_14956379_SNP [dm6]	G	T	1.266e^-4	0.824	INTRON CG42313
3R	25121957	3R_25121957_SNP [dm3] 3R_29296235_SNP [dm6]	T	C	1.268e^-4	0.824	NON_SYNONYMOUS_CODING CG14506
3L	13923824	3L_13923824_SNP [dm3] 3L_13930724_SNP [dm6]	A	G	1.273e^-4	0.824	SYNONYMOUS_CODING Gl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	3718388	2L_3718388_SNP [dm3] 2L_3718388_SNP [dm6]	A	C	1.273e^-4	0.824	UTR_5_PRIME Shaw UPSTREAM lectin-24A
X	20227751	X_20227751_INS [dm3] X_20356724_INS [dm6]	C	CGC	1.279e^-4	0.824	INTERGENIC
3L	2424562	3L_2424562_SNP [dm3] 3L_2424562_SNP [dm6]	C	G	1.279e^-4	0.824	INTRON CG45186
3R	22725786	3R_22725786_SNP [dm3] 3R_26900064_SNP [dm6]	C	T	1.281e^-4	0.824	INTRON T48	regulatory region REDfly_CRMs
2R	7590344	2R_7590344_SNP [dm3] 2R_11702839_SNP [dm6]	A	G	1.292e^-4	0.824	UPSTREAM Ir48b INTERGENIC
2L	15090517	2L_15090517_SNP [dm3] 2L_15090517_SNP [dm6]	A	G	1.302e^-4	0.824	INTRON CG15270
2L	1648012	2L_1648012_SNP [dm3] 2L_1648012_SNP [dm6]	A	G	1.306e^-4	0.824	UPSTREAM CR45695 INTERGENIC
X	5908701	X_5908701_SNP [dm3] X_6014668_SNP [dm6]	T	C	1.306e^-4	0.824	DOWNSTREAM CR44499 INTERGENIC
3L	8580954	3L_8580954_SNP [dm3] 3L_8587854_SNP [dm6]	G	A	1.309e^-4	0.824	NON_SYNONYMOUS_CODING CG43078 UTR_5_PRIME CG43078	TF binding site mE1_TFBS_chinmo
3L	11967662	3L_11967662_SNP [dm3] 3L_11974562_SNP [dm6]	T	C	1.309e^-4	0.824	UPSTREAM CG42397 & 1 other INTERGENIC
3L	14073440	3L_14073440_SNP [dm3] 3L_14080340_SNP [dm6]	G	A	1.311e^-4	0.824	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_sens
3L	10321801	3L_10321801_DEL [dm3] 3L_10328701_DEL [dm6]	TTCACAT	T	1.312e^-4	0.824	INTERGENIC
3L	8580965	3L_8580965_SNP [dm3] 3L_8587865_SNP [dm6]	T	G	1.315e^-4	0.824	SYNONYMOUS_CODING CG43078 UTR_5_PRIME CG43078	TF binding site mE1_TFBS_chinmo
2R	20789054	2R_20789054_SNP [dm3] 2R_24901531_SNP [dm6]	C	T	1.316e^-4	0.824	UPSTREAM Tpc2 INTRON NaCP60E	TF binding site mE1_TFBS_HSA
X	10281501	X_10281501_SNP [dm3] X_10387468_SNP [dm6]	A	C	1.317e^-4	0.824	INTRON flw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10062607	2L_10062607_SNP [dm3] 2L_10062607_SNP [dm6]	C	T	1.318e^-4	0.824	SYNONYMOUS_CODING Spn31A
2L	1678307	2L_1678307_SNP [dm3] 2L_1678307_SNP [dm6]	G	T	1.321e^-4	0.824	INTRON chinmo
X	20945631	X_20945631_SNP [dm3] X_21074604_SNP [dm6]	C	A	1.326e^-4	0.824	INTRON bves
3L	2438208	3L_2438208_INS [dm3] 3L_2438208_INS [dm6]	C	TG	1.328e^-4	0.824	INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	8447795	2L_8447795_SNP [dm3] 2L_8447795_SNP [dm6]	C	T	1.333e^-4	0.824	SYNONYMOUS_CODING U26 UTR_3_PRIME U26
2R	12768151	2R_12768151_SNP [dm3] 2R_16880646_SNP [dm6]	A	C	1.336e^-4	0.824	UPSTREAM CG6472 INTRON CG8910
3L	11892131	3L_11892131_SNP [dm3] 3L_11899031_SNP [dm6]	C	T	1.336e^-4	0.824	INTRON CG44837 & 1 other
2R	16327724	2R_16327724_SNP [dm3] 2R_20440219_SNP [dm6]	A	G	1.338e^-4	0.824	INTRON CG12484
X	14841777	X_14841777_SNP [dm3] X_14947744_SNP [dm6]	A	C	1.344e^-4	0.824	INTRON pdgy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14925605	3L_14925605_SNP [dm3] 3L_14932505_SNP [dm6]	T	G	1.346e^-4	0.824	INTRON DCX-EMAP
2L	22701138	2L_22701138_SNP [dm3] 2L_22808406_SNP [dm6]	C	A	1.347e^-4	0.824	INTERGENIC
3L	4416371	3L_4416371_SNP [dm3] 3L_4416371_SNP [dm6]	G	A	1.348e^-4	0.824	INTRON DOR
2L	8742871	2L_8742871_SNP [dm3] 2L_8742871_SNP [dm6]	T	G	1.352e^-4	0.824	INTERGENIC
3L	4290259	3L_4290259_SNP [dm3] 3L_4290259_SNP [dm6]	C	T	1.354e^-4	0.824	SYNONYMOUS_CODING Hexo1 DOWNSTREAM CG15012	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	10447768	2L_10447768_SNP [dm3] 2L_10447768_SNP [dm6]	A	T	1.356e^-4	0.824	INTRON loh
2L	8448217	2L_8448217_SNP [dm3] 2L_8448217_SNP [dm6]	T	C	1.359e^-4	0.824	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA
X	17623097	X_17623097_SNP [dm3] X_17729064_SNP [dm6]	G	T	1.368e^-4	0.824	INTRON CG42684
2L	18982341	2L_18982341_INS [dm3] 2L_18982341_INS [dm6]	G	GC	1.381e^-4	0.824	INTRON Swip-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	19892930	2R_19892930_SNP [dm3] 2R_24005407_SNP [dm6]	G	T	1.383e^-4	0.824	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9163496	3R_9163496_SNP [dm3] 3R_13337774_SNP [dm6]	G	C	1.386e^-4	0.824	UPSTREAM PK2-R1 INTERGENIC
X	9096885	X_9096885_SNP [dm3] X_9202852_SNP [dm6]	T	A	1.388e^-4	0.824	INTERGENIC
2R	6586590	2R_6586590_SNP [dm3] 2R_10699085_SNP [dm6]	G	T	1.390e^-4	0.824	INTRON stan
3L	16432980	3L_16432980_SNP [dm3] 3L_16439880_SNP [dm6]	A	T	1.400e^-4	0.824	INTRON CG33158 & 1 other
2L	8332948	2L_8332948_SNP [dm3] 2L_8332948_SNP [dm6]	T	G	1.406e^-4	0.824	DOWNSTREAM CG14275 INTERGENIC
3L	3635229	3L_3635229_SNP [dm3] 3L_3635229_SNP [dm6]	C	A	1.416e^-4	0.824	INTRON dar1
3L	10733138	3L_10733138_INS [dm3] 3L_10740038_INS [dm6]	T	TTC	1.416e^-4	0.824	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	10804955	3L_10804955_SNP [dm3] 3L_10811855_SNP [dm6]	T	C	1.419e^-4	0.824	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20809699	3L_20809699_INS [dm3] 3L_20816599_INS [dm6]	T	TCTC	1.423e^-4	0.824	UTR_5_PRIME Pka-R1 UPSTREAM CG3618 DOWNSTREAM Mst77F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3660597	2R_3660597_SNP [dm3] 2R_7773092_SNP [dm6]	C	T	1.426e^-4	0.824	INTRON CG30497 & 1 other	TF binding site mE1_TFBS_inv
X	20592200	X_20592200_SNP [dm3] X_20721173_SNP [dm6]	C	G	1.430e^-4	0.824	INTERGENIC
2L	9592057	2L_9592057_SNP [dm3] 2L_9592057_SNP [dm6]	G	A	1.432e^-4	0.824	DOWNSTREAM CG3841 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
X	20227718	X_20227718_SNP [dm3] X_20356691_SNP [dm6]	A	G	1.435e^-4	0.824	INTERGENIC
X	18253441	X_18253441_SNP [dm3] X_18359408_SNP [dm6]	G	A	1.446e^-4	0.824	SYNONYMOUS_CODING CG6106
X	14842103	X_14842103_SNP [dm3] X_14948070_SNP [dm6]	G	A	1.451e^-4	0.824	INTRON pdgy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5908669	X_5908669_SNP [dm3] X_6014636_SNP [dm6]	A	G	1.455e^-4	0.824	DOWNSTREAM CR44499 INTERGENIC
X	6879148	X_6879148_DEL [dm3] X_6985115_DEL [dm6]	TT	T	1.457e^-4	0.824	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3R	17684793	3R_17684793_SNP [dm3] 3R_21859071_SNP [dm6]	A	C	1.467e^-4	0.824	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9600530	2L_9600530_SNP [dm3] 2L_9600530_SNP [dm6]	T	C	1.473e^-4	0.824	SYNONYMOUS_CODING CG4382	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13250753	2R_13250753_SNP [dm3] 2R_17363248_SNP [dm6]	A	G	1.477e^-4	0.824	SYNONYMOUS_CODING mbl INTRON mbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1845842	3L_1845842_DEL [dm3] 3L_1845842_DEL [dm6]	TCGACCAGAT	T	1.486e^-4	0.824	INTERGENIC
2L	1156286	2L_1156286_SNP [dm3] 2L_1156286_SNP [dm6]	G	A	1.487e^-4	0.824	START_GAINED capt UTR_5_PRIME capt INTRON capt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	5483112	3R_5483112_SNP [dm3] 3R_9657390_SNP [dm6]	C	A	1.490e^-4	0.824	INTRON CG9492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10624418	3L_10624418_SNP [dm3] 3L_10631318_SNP [dm6]	G	C	1.493e^-4	0.824	UPSTREAM hay & 1 other INTRON hay & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4141375	2L_4141375_SNP [dm3] 2L_4141375_SNP [dm6]	G	T	1.496e^-4	0.824	INTERGENIC
3L	15623928	3L_15623928_SNP [dm3] 3L_15630828_SNP [dm6]	A	C	1.501e^-4	0.824	INTRON comm3
2L	876500	2L_876500_SNP [dm3] 2L_876500_SNP [dm6]	T	C	1.505e^-4	0.824	SYNONYMOUS_CODING PNUTS UPSTREAM ninaA DOWNSTREAM CG15824	TF binding site mE1_TFBS_chinmo
3L	17456381	3L_17456381_INS [dm3] 3L_17463281_INS [dm6]	A	AA	1.508e^-4	0.824	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18478605	3R_18478605_SNP [dm3] 3R_22652883_SNP [dm6]	T	A	1.512e^-4	0.824	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2479891	X_2479891_SNP [dm3] X_2585858_SNP [dm6]	T	G	1.516e^-4	0.824	UPSTREAM wds & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	17441681	3L_17441681_DEL [dm3] 3L_17448581_DEL [dm6]	CC	C	1.519e^-4	0.824	INTRON CG18265
2L	15003144	2L_15003144_SNP [dm3] 2L_15003144_SNP [dm6]	C	T	1.519e^-4	0.824	INTERGENIC
2R	16440068	2R_16440068_SNP [dm3] 2R_20552563_SNP [dm6]	C	T	1.520e^-4	0.824	UPSTREAM CG13430 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3R	22859628	3R_22859628_SNP [dm3] 3R_27033906_SNP [dm6]	A	G	1.523e^-4	0.824	INTRON RYa-R	TF binding site BDTNP1_TFBS_da
2L	7991690	2L_7991690_SNP [dm3] 2L_7991690_SNP [dm6]	A	G	1.527e^-4	0.824	UPSTREAM pes INTRON pes	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3491538	2L_3491538_SNP [dm3] 2L_3491538_SNP [dm6]	C	T	1.528e^-4	0.824	UPSTREAM CG15414 INTERGENIC
2L	13676031	2L_13676031_SNP [dm3] 2L_13676031_SNP [dm6]	T	G	1.530e^-4	0.824	DOWNSTREAM CG31814 INTERGENIC
2L	516272	2L_516272_SNP [dm3] 2L_516272_SNP [dm6]	G	T	1.536e^-4	0.824	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	15065195	2R_15065195_SNP [dm3] 2R_19177690_SNP [dm6]	C	T	1.546e^-4	0.824	DOWNSTREAM CG10737 INTRON CG10737
3R	15497024	3R_15497024_SNP [dm3] 3R_19671302_SNP [dm6]	C	T	1.547e^-4	0.824	UPSTREAM Naam DOWNSTREAM CG7432 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
2R	3258309	2R_3258309_SNP [dm3] 2R_7370804_SNP [dm6]	G	A	1.552e^-4	0.824	INTRON Dscam1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_hkb mE1_TFBS_HSA
X	8210035	X_8210035_SNP [dm3] X_8316002_SNP [dm6]	T	A	1.553e^-4	0.824	INTRON nAChRalpha3
2L	4816080	2L_4816080_SNP [dm3] 2L_4816080_SNP [dm6]	A	C	1.554e^-4	0.824	SYNONYMOUS_CODING CG3225 DOWNSTREAM CG15629	TF binding site mE1_TFBS_inv
3L	18716091	3L_18716091_SNP [dm3] 3L_18722991_SNP [dm6]	C	T	1.560e^-4	0.824	NON_SYNONYMOUS_CODING CG12477 UPSTREAM CR43985	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	14842540	X_14842540_SNP [dm3] X_14948507_SNP [dm6]	T	C	1.563e^-4	0.824	INTRON pdgy	TF binding site mE1_TFBS_HSA
3L	22329604	3L_22329604_DEL [dm3] 3L_22336504_DEL [dm6]	ACACATCCACAG...	A	1.570e^-4	0.824	INTRON Ten-m	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12902448	3R_12902448_SNP [dm3] 3R_17076726_SNP [dm6]	G	T	1.571e^-4	0.824	NON_SYNONYMOUS_CODING Keap1
3R	11689682	3R_11689682_SNP [dm3] 3R_15863960_SNP [dm6]	G	C	1.581e^-4	0.824	INTRON CG31183
2L	3267838	2L_3267838_SNP [dm3] 2L_3267838_SNP [dm6]	A	G	1.581e^-4	0.824	UPSTREAM CR44484 INTERGENIC
3R	22749615	3R_22749615_SNP [dm3] 3R_26923893_SNP [dm6]	A	T	1.583e^-4	0.824	INTRON sda
3L	22187946	3L_22187946_SNP [dm3] 3L_22194846_SNP [dm6]	G	C	1.588e^-4	0.825	INTRON olf413
2R	13250768	2R_13250768_SNP [dm3] 2R_17363263_SNP [dm6]	T	C	1.597e^-4	0.826	SYNONYMOUS_CODING mbl INTRON mbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6642252	X_6642252_SNP [dm3] X_6748219_SNP [dm6]	C	A	1.600e^-4	0.826	UPSTREAM CR44964 INTRON CG14439
3L	11879623	3L_11879623_INS [dm3] 3L_11886523_INS [dm6]	G	GTG	1.612e^-4	0.826	DOWNSTREAM CG5897 INTRON CG44837
2R	12476929	2R_12476929_SNP [dm3] 2R_16589424_SNP [dm6]	G	T	1.613e^-4	0.826	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	20231859	3R_20231859_SNP [dm3] 3R_24406137_SNP [dm6]	A	C	1.626e^-4	0.826	INTRON nAChRalpha1
3L	11265094	3L_11265094_SNP [dm3] 3L_11271994_SNP [dm6]	C	A	1.636e^-4	0.826	INTERGENIC
2L	5160331	2L_5160331_SNP [dm3] 2L_5160331_SNP [dm6]	A	C	1.645e^-4	0.826	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7591707	3R_7591707_SNP [dm3] 3R_11765985_SNP [dm6]	A	G	1.649e^-4	0.826	UTR_3_PRIME l_3_neo38 DOWNSTREAM l_3_neo38	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	956993	3L_956993_SNP [dm3] 3L_956993_SNP [dm6]	C	G	1.651e^-4	0.826	INTRON Glut1
3R	12902454	3R_12902454_SNP [dm3] 3R_17076732_SNP [dm6]	G	A	1.651e^-4	0.826	NON_SYNONYMOUS_CODING Keap1
X	16923027	X_16923027_SNP [dm3] X_17028994_SNP [dm6]	T	C	1.651e^-4	0.826	INTRON CG45002
2R	16177798	2R_16177798_SNP [dm3] 2R_20290293_SNP [dm6]	A	G	1.665e^-4	0.826	INTRON Cpr56F & 1 other
3L	10804938	3L_10804938_SNP [dm3] 3L_10811838_SNP [dm6]	A	C	1.668e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21206934	X_21206934_SNP [dm3] X_21335907_SNP [dm6]	G	A	1.676e^-4	0.826	SYNONYMOUS_CODING tty	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12110479	2R_12110479_SNP [dm3] 2R_16222974_SNP [dm6]	T	G	1.676e^-4	0.826	UPSTREAM CG7798 DOWNSTREAM CG15706 EXON CR43898
2R	6090370	2R_6090370_SNP [dm3] 2R_10202865_SNP [dm6]	G	T	1.682e^-4	0.826	INTERGENIC
2R	12474766	2R_12474766_SNP [dm3] 2R_16587261_SNP [dm6]	A	G	1.684e^-4	0.826	UTR_3_PRIME CG8311 DOWNSTREAM RpLP2	TF binding site mE1_TFBS_cad
X	19517064	X_19517064_SNP [dm3] X_19623031_SNP [dm6]	G	A	1.699e^-4	0.826	UTR_5_PRIME NAA20 UPSTREAM MKP-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9096916	X_9096916_SNP [dm3] X_9202883_SNP [dm6]	A	T	1.709e^-4	0.826	INTERGENIC
3L	5334858	3L_5334858_SNP [dm3] 3L_5341758_SNP [dm6]	T	G	1.720e^-4	0.826	UPSTREAM tRNA:S7:64D INTERGENIC
3R	19356881	3R_19356881_SNP [dm3] 3R_23531159_SNP [dm6]	A	G	1.724e^-4	0.826	UPSTREAM CG10175 INTERGENIC
2L	1995539	2L_1995539_SNP [dm3] 2L_1995539_SNP [dm6]	G	A	1.727e^-4	0.826	INTERGENIC
3L	5649252	3L_5649252_SNP [dm3] 3L_5656152_SNP [dm6]	C	T	1.728e^-4	0.826	INTRON lin-28	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	17240573	3L_17240573_SNP [dm3] 3L_17247473_SNP [dm6]	G	A	1.730e^-4	0.826	INTRON CR43870
3L	9337996	3L_9337996_SNP [dm3] 3L_9344896_SNP [dm6]	T	G	1.736e^-4	0.826	SPLICE_SITE_REGION PGRP-LC INTRON PGRP-LC
3L	14182015	3L_14182015_SNP [dm3] 3L_14188915_SNP [dm6]	A	C	1.736e^-4	0.826	INTRON nan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	16538726	2L_16538726_SNP [dm3] 2L_16538726_SNP [dm6]	A	G	1.740e^-4	0.826	INTERGENIC
2L	3720027	2L_3720027_SNP [dm3] 2L_3720027_SNP [dm6]	T	C	1.745e^-4	0.826	INTRON Shaw	TF binding site BDTNP1_TFBS_dl
2L	16538625	2L_16538625_SNP [dm3] 2L_16538625_SNP [dm6]	T	C	1.752e^-4	0.826	INTERGENIC
2L	14322380	2L_14322380_SNP [dm3] 2L_14322380_SNP [dm6]	C	T	1.752e^-4	0.826	SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_cad
2L	3725021	2L_3725021_SNP [dm3] 2L_3725021_SNP [dm6]	T	C	1.758e^-4	0.826	UTR_3_PRIME Shaw INTRON Shaw
2L	3718354	2L_3718354_SNP [dm3] 2L_3718354_SNP [dm6]	T	C	1.760e^-4	0.826	UTR_5_PRIME Shaw UPSTREAM lectin-24A
2L	588293	2L_588293_SNP [dm3] 2L_588293_SNP [dm6]	G	T	1.770e^-4	0.826	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10027737	2L_10027737_SNP [dm3] 2L_10027737_SNP [dm6]	T	C	1.772e^-4	0.826	NON_SYNONYMOUS_CODING CG13127
3R	10316451	3R_10316451_SNP [dm3] 3R_14490729_SNP [dm6]	A	G	1.775e^-4	0.826	INTERGENIC
3R	22024652	3R_22024652_SNP [dm3] 3R_26198930_SNP [dm6]	T	C	1.796e^-4	0.826	INTRON CR44320
2R	12353834	2R_12353834_DEL [dm3] 2R_16466329_DEL [dm6]	AG	A	1.797e^-4	0.826	UPSTREAM CheB53a INTERGENIC
2R	17423239	2R_17423239_SNP [dm3] 2R_21535734_SNP [dm6]	T	A	1.800e^-4	0.826	UTR_3_PRIME CG30286 INTRON Egfr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	18376097	3L_18376097_SNP [dm3] 3L_18382997_SNP [dm6]	A	C	1.801e^-4	0.826	INTERGENIC
2R	18674049	2R_18674049_SNP [dm3] 2R_22786544_SNP [dm6]	A	T	1.804e^-4	0.826	INTRON CG42260
3L	8151147	3L_8151147_SNP [dm3] 3L_8158047_SNP [dm6]	T	C	1.805e^-4	0.826	INTRON CG42445
2R	17337057	2R_17337057_SNP [dm3] 2R_21449552_SNP [dm6]	A	G	1.807e^-4	0.826	INTRON Sdc	TF binding site BDTNP1_TFBS_twi
2R	6658026	2R_6658026_SNP [dm3] 2R_10770521_SNP [dm6]	A	G	1.807e^-4	0.826	INTRON CG33144
3R	10312853	3R_10312853_SNP [dm3] 3R_14487131_SNP [dm6]	C	T	1.814e^-4	0.826	INTERGENIC
3L	4289756	3L_4289756_SNP [dm3] 3L_4289756_SNP [dm6]	C	A	1.815e^-4	0.826	SYNONYMOUS_CODING Hexo1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	4216307	X_4216307_SNP [dm3] X_4322274_SNP [dm6]	T	A	1.815e^-4	0.826	UPSTREAM norpA & 1 other DOWNSTREAM CG2982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3R	7957311	3R_7957311_SNP [dm3] 3R_12131589_SNP [dm6]	T	G	1.817e^-4	0.826	DOWNSTREAM tRNA:K5:87BC INTERGENIC
3L	18646253	3L_18646253_SNP [dm3] 3L_18653153_SNP [dm6]	C	A	1.817e^-4	0.826	INTRON MYPT-75D
X	5853328	X_5853328_SNP [dm3] X_5959295_SNP [dm6]	C	T	1.820e^-4	0.826	SYNONYMOUS_CODING fs_1_M3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19964230	3L_19964230_SNP [dm3] 3L_19971130_SNP [dm6]	T	C	1.824e^-4	0.826	SYNONYMOUS_CODING Ac76E	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26445122	3R_26445122_SNP [dm3] 3R_30619400_SNP [dm6]	T	C	1.826e^-4	0.826	INTRON CG44954
3L	4290673	3L_4290673_SNP [dm3] 3L_4290673_SNP [dm6]	C	T	1.835e^-4	0.826	SYNONYMOUS_CODING Hexo1 DOWNSTREAM CG15012	TF binding site mE1_TFBS_sens
2R	15590591	2R_15590591_SNP [dm3] 2R_19703086_SNP [dm6]	G	A	1.841e^-4	0.826	UTR_3_PRIME Obp56d DOWNSTREAM Obp56d	regulatory region REDfly_CRMs
X	4461691	X_4461691_SNP [dm3] X_4567658_SNP [dm6]	G	A	1.849e^-4	0.826	INTRON CR32773
3R	12928396	3R_12928396_SNP [dm3] 3R_17102674_SNP [dm6]	C	T	1.852e^-4	0.826	INTRON cher
X	14842374	X_14842374_INS [dm3] X_14948341_INS [dm6]	A	ACATAGTCCATAAGGTA...	1.852e^-4	0.826	INTRON pdgy	TF binding site mE1_TFBS_HSA
2L	16194937	2L_16194937_SNP [dm3] 2L_16194937_SNP [dm6]	A	G	1.854e^-4	0.826	DOWNSTREAM CR44734 & 1 other INTERGENIC
3R	13898577	3R_13898577_DEL [dm3] 3R_18072855_DEL [dm6]	ACTAAAGA	A	1.863e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12631791	2R_12631791_SNP [dm3] 2R_16744286_SNP [dm6]	G	A	1.863e^-4	0.826	DOWNSTREAM Sfp53D & 1 other INTERGENIC
2L	6493388	2L_6493388_SNP [dm3] 2L_6493388_SNP [dm6]	T	G	1.864e^-4	0.826	SYNONYMOUS_CODING CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	3936854	3R_3936854_SNP [dm3] 3R_8111132_SNP [dm6]	A	C	1.866e^-4	0.826	SYNONYMOUS_CODING puc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	6214866	2R_6214866_SNP [dm3] 2R_10327361_SNP [dm6]	G	A	1.868e^-4	0.826	INTRON CG42732
3L	14561388	3L_14561388_SNP [dm3] 3L_14568288_SNP [dm6]	A	G	1.877e^-4	0.826	DOWNSTREAM CG42758 INTERGENIC
3L	18646243	3L_18646243_SNP [dm3] 3L_18653143_SNP [dm6]	C	T	1.892e^-4	0.826	INTRON MYPT-75D
X	9179254	X_9179254_SNP [dm3] X_9285221_SNP [dm6]	C	T	1.895e^-4	0.826	INTRON lz	TF binding site BDTNP1_TFBS_dl
2L	3268254	2L_3268254_SNP [dm3] 2L_3268254_SNP [dm6]	T	C	1.900e^-4	0.826	UPSTREAM CR44484 INTERGENIC
X	16811923	X_16811923_SNP [dm3] X_16917890_SNP [dm6]	G	C	1.901e^-4	0.826	INTRON CG4928
3R	19126952	3R_19126952_SNP [dm3] 3R_23301230_SNP [dm6]	G	A	1.905e^-4	0.826	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20391481	2L_20391481_SNP [dm3] 2L_20391481_SNP [dm6]	G	C	1.916e^-4	0.826	INTRON CG10947
3L	1344946	3L_1344946_SNP [dm3] 3L_1344946_SNP [dm6]	G	A	1.916e^-4	0.826	SYNONYMOUS_CODING Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11724908	2R_11724908_SNP [dm3] 2R_15837403_SNP [dm6]	C	T	1.919e^-4	0.826	INTRON tun	regulatory region REDfly_CRMs
2L	10785598	2L_10785598_SNP [dm3] 2L_10785598_SNP [dm6]	A	T	1.932e^-4	0.826	INTRON CG31869 EXON CR44582
2L	10027732	2L_10027732_SNP [dm3] 2L_10027732_SNP [dm6]	G	C	1.933e^-4	0.826	NON_SYNONYMOUS_CODING CG13127
2L	7365731	2L_7365731_SNP [dm3] 2L_7365731_SNP [dm6]	G	A	1.936e^-4	0.826	INTRON Wnt10
3L	14562150	3L_14562150_SNP [dm3] 3L_14569050_SNP [dm6]	A	G	1.937e^-4	0.826	DOWNSTREAM CG42758 INTERGENIC
3L	8151160	3L_8151160_DEL [dm3] 3L_8158060_DEL [dm6]	AT	A	1.944e^-4	0.826	INTRON CG42445
2L	7646154	2L_7646154_SNP [dm3] 2L_7646154_SNP [dm6]	T	G	1.944e^-4	0.826	DOWNSTREAM Slob INTRON Slob
3R	21815066	3R_21815066_SNP [dm3] 3R_25989344_SNP [dm6]	G	A	1.950e^-4	0.826	SYNONYMOUS_CODING Nf1	TF binding site mE1_TFBS_sens
3R	10316473	3R_10316473_DEL [dm3] 3R_14490751_DEL [dm6]	TT	T	1.950e^-4	0.826	INTERGENIC
2R	18820579	2R_18820579_SNP [dm3] 2R_22933056_SNP [dm6]	A	G	1.956e^-4	0.826	INTRON CG3788	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	6802495	3L_6802495_SNP [dm3] 3L_6809395_SNP [dm6]	C	T	1.958e^-4	0.826	INTERGENIC
3L	1344715	3L_1344715_SNP [dm3] 3L_1344715_SNP [dm6]	A	G	1.967e^-4	0.826	SYNONYMOUS_CODING Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	19892932	2R_19892932_SNP [dm3] 2R_24005409_SNP [dm6]	G	T	1.968e^-4	0.826	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13898566	3R_13898566_SNP [dm3] 3R_18072844_SNP [dm6]	G	A	1.974e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	18396258	3L_18396258_SNP [dm3] 3L_18403158_SNP [dm6]	T	G	1.975e^-4	0.826	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	19356964	3R_19356964_SNP [dm3] 3R_23531242_SNP [dm6]	G	A	1.980e^-4	0.826	UPSTREAM CG10175 INTERGENIC
3L	3855385	3L_3855385_SNP [dm3] 3L_3855385_SNP [dm6]	G	A	1.987e^-4	0.826	INTRON Awh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	3855412	3L_3855412_SNP [dm3] 3L_3855412_SNP [dm6]	T	C	1.987e^-4	0.826	INTRON Awh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	25198427	3R_25198427_SNP [dm3] 3R_29372705_SNP [dm6]	A	T	1.991e^-4	0.826	INTERGENIC
X	5826390	X_5826390_SNP [dm3] X_5932357_SNP [dm6]	G	T	1.992e^-4	0.826	INTRON CG3726
2R	3265674	2R_3265674_SNP [dm3] 2R_7378169_SNP [dm6]	A	C	2.000e^-4	0.826	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
2L	8448559	2L_8448559_SNP [dm3] 2L_8448559_SNP [dm6]	C	T	2.007e^-4	0.826	SYNONYMOUS_CODING U26
X	3777993	X_3777993_SNP [dm3] X_3883960_SNP [dm6]	G	A	2.009e^-4	0.826	UPSTREAM CG15239 DOWNSTREAM VhaAC39-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11603778	3L_11603778_SNP [dm3] 3L_11610678_SNP [dm6]	T	C	2.014e^-4	0.826	NON_SYNONYMOUS_CODING Muc68Ca DOWNSTREAM CG42832
3R	5013711	3R_5013711_SNP [dm3] 3R_9187989_SNP [dm6]	G	T	2.021e^-4	0.826	INTRON pum	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	5309167	3R_5309167_SNP [dm3] 3R_9483445_SNP [dm6]	C	T	2.023e^-4	0.826	INTRON CG16779 EXON CR45203
2L	2797904	2L_2797904_SNP [dm3] 2L_2797904_SNP [dm6]	G	C	2.023e^-4	0.826	INTRON Syt1 EXON CR43821	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	9514659	3L_9514659_SNP [dm3] 3L_9521559_SNP [dm6]	T	C	2.027e^-4	0.826	INTRON CG33700
3R	20551315	3R_20551315_DEL [dm3] 3R_24725593_DEL [dm6]	CA	C	2.034e^-4	0.826	INTRON tok	TF binding site BDTNP1_TFBS_dl
3R	11689669	3R_11689669_SNP [dm3] 3R_15863947_SNP [dm6]	T	G	2.041e^-4	0.826	INTRON CG31183
X	3283752	X_3283752_SNP [dm3] X_3389719_SNP [dm6]	C	T	2.046e^-4	0.826	UTR_3_PRIME dm & 1 other INTRON CR44999
3R	13900802	3R_13900802_SNP [dm3] 3R_18075080_SNP [dm6]	A	G	2.047e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8424306	X_8424306_SNP [dm3] X_8530273_SNP [dm6]	C	G	2.048e^-4	0.826	UPSTREAM PIP82 INTRON Nrg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13022099	X_13022099_SNP [dm3] X_13128066_SNP [dm6]	A	T	2.050e^-4	0.826	UPSTREAM CG15717 & 1 other DOWNSTREAM snmRNA:204 INTRON CG32638	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_Trl
2R	17424493	2R_17424493_SNP [dm3] 2R_21536988_SNP [dm6]	T	G	2.058e^-4	0.828	NON_SYNONYMOUS_CODING CG30287 UPSTREAM CG30286 INTRON Egfr	TF binding site mE1_TFBS_sens
3R	26841732	3R_26841732_SNP [dm3] 3R_31016010_SNP [dm6]	A	G	2.067e^-4	0.829	INTRON 5-HT7
2L	8370098	2L_8370098_SNP [dm3] 2L_8370098_SNP [dm6]	A	T	2.074e^-4	0.829	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
3L	10804940	3L_10804940_SNP [dm3] 3L_10811840_SNP [dm6]	C	T	2.075e^-4	0.829	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21581698	3L_21581698_SNP [dm3] 3L_21588598_SNP [dm6]	G	T	2.086e^-4	0.832	INTRON TfAP-2
X	21861180	X_21861180_SNP [dm3] X_22459344_SNP [dm6]	T	A	2.129e^-4	0.846	INTRON CG14619	transposable element FlyBase
2R	19070493	2R_19070493_SNP [dm3] 2R_23182970_SNP [dm6]	C	T	2.157e^-4	0.846	INTRON CG34371
3L	9331758	3L_9331758_SNP [dm3] 3L_9338658_SNP [dm6]	C	G	2.158e^-4	0.846	UPSTREAM PGRP-LC DOWNSTREAM PGRP-LA INTERGENIC
3L	4292786	3L_4292786_SNP [dm3] 3L_4292786_SNP [dm6]	A	T	2.158e^-4	0.846	UPSTREAM CG15012 INTRON CG1319	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	8908225	3L_8908225_SNP [dm3] 3L_8915125_SNP [dm6]	T	G	2.164e^-4	0.846	UPSTREAM CR43970 INTRON Tsp66E
3R	22054301	3R_22054301_SNP [dm3] 3R_26228579_SNP [dm6]	C	T	2.165e^-4	0.846	INTERGENIC
2L	2705646	2L_2705646_SNP [dm3] 2L_2705646_SNP [dm6]	C	T	2.172e^-4	0.846	INTRON CG31690
3R	22030549	3R_22030549_SNP [dm3] 3R_26204827_SNP [dm6]	G	A	2.172e^-4	0.846	INTRON CR44320
2L	18984709	2L_18984709_SNP [dm3] 2L_18984709_SNP [dm6]	T	A	2.178e^-4	0.846	INTRON Swip-1
3L	22836504	3L_22836504_SNP [dm3] 3L_22843404_SNP [dm6]	C	T	2.187e^-4	0.846	DOWNSTREAM tRNA:CR32456 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10316214	3R_10316214_SNP [dm3] 3R_14490492_SNP [dm6]	A	C	2.189e^-4	0.846	INTERGENIC
3R	4338745	3R_4338745_SNP [dm3] 3R_8513023_SNP [dm6]	T	A	2.192e^-4	0.846	UPSTREAM Or85c INTERGENIC
X	6477081	X_6477081_SNP [dm3] X_6583048_SNP [dm6]	G	T	2.194e^-4	0.846	SYNONYMOUS_CODING CG34417 INTRON CG34417
3R	15708282	3R_15708282_SNP [dm3] 3R_19882560_SNP [dm6]	C	T	2.204e^-4	0.846	SYNONYMOUS_CODING Pk92B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24397623	3R_24397623_SNP [dm3] 3R_28571901_SNP [dm6]	T	C	2.204e^-4	0.846	INTERGENIC	regulatory region REDfly_CRMs
X	20945594	X_20945594_SNP [dm3] X_21074567_SNP [dm6]	T	G	2.205e^-4	0.846	INTRON bves
3R	22168264	3R_22168264_SNP [dm3] 3R_26342542_SNP [dm6]	A	T	2.206e^-4	0.846	INTRON CG33970
2R	6650420	2R_6650420_SNP [dm3] 2R_10762915_SNP [dm6]	T	A	2.207e^-4	0.846	INTRON CG33144
3L	15000889	3L_15000889_SNP [dm3] 3L_15007789_SNP [dm6]	T	A	2.209e^-4	0.846	INTRON Reck
3L	5850654	3L_5850654_SNP [dm3] 3L_5857554_SNP [dm6]	T	C	2.218e^-4	0.846	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	13893848	3L_13893848_INS [dm3] 3L_13900748_INS [dm6]	A	AGCCACAGCTCGGTGTTGGG...	2.218e^-4	0.846	INTRON dysc
2L	5495871	2L_5495871_SNP [dm3] 2L_5495871_SNP [dm6]	A	C	2.219e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_sbb
3L	12450024	3L_12450024_SNP [dm3] 3L_12456924_SNP [dm6]	G	A	2.233e^-4	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	5256720	X_5256720_SNP [dm3] X_5362687_SNP [dm6]	C	T	2.238e^-4	0.848	INTRON SK
X	13017919	X_13017919_SNP [dm3] X_13123886_SNP [dm6]	A	T	2.243e^-4	0.848	DOWNSTREAM CG42237 INTRON CG32638	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22044066	3L_22044066_SNP [dm3] 3L_22050966_SNP [dm6]	T	A	2.246e^-4	0.848	INTRON Oct-TyrR
X	7620847	X_7620847_SNP [dm3] X_7726814_SNP [dm6]	T	C	2.249e^-4	0.848	SYNONYMOUS_CODING NELF-B DOWNSTREAM Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13269737	2R_13269737_SNP [dm3] 2R_17382232_SNP [dm6]	G	A	2.256e^-4	0.848	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	21160844	X_21160844_SNP [dm3] X_21289817_SNP [dm6]	G	C	2.263e^-4	0.848	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16890372	3R_16890372_SNP [dm3] 3R_21064650_SNP [dm6]	G	A	2.265e^-4	0.848	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2L	3719717	2L_3719717_SNP [dm3] 2L_3719717_SNP [dm6]	G	A	2.265e^-4	0.848	INTRON Shaw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	957111	3L_957111_SNP [dm3] 3L_957111_SNP [dm6]	A	T	2.271e^-4	0.848	INTRON Glut1
X	20944249	X_20944249_SNP [dm3] X_21073222_SNP [dm6]	G	T	2.289e^-4	0.853	INTRON bves
3L	18378459	3L_18378459_SNP [dm3] 3L_18385359_SNP [dm6]	A	G	2.301e^-4	0.855	INTERGENIC
3R	24411879	3R_24411879_SNP [dm3] 3R_28586157_SNP [dm6]	A	T	2.307e^-4	0.855	UPSTREAM fkh EXON MRE23	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	8320168	2L_8320168_SNP [dm3] 2L_8320168_SNP [dm6]	A	T	2.307e^-4	0.855	UPSTREAM CG7787 & 1 other INTERGENIC
3R	8679034	3R_8679034_SNP [dm3] 3R_12853312_SNP [dm6]	A	C	2.316e^-4	0.856	INTERGENIC
X	8210238	X_8210238_SNP [dm3] X_8316205_SNP [dm6]	T	C	2.324e^-4	0.858	INTRON nAChRalpha3
3L	19425655	3L_19425655_SNP [dm3] 3L_19432555_SNP [dm6]	C	T	2.330e^-4	0.858	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	4344880	3L_4344880_SNP [dm3] 3L_4344880_SNP [dm6]	T	G	2.347e^-4	0.858	UPSTREAM CR45156 INTRON Cip4
2L	8742817	2L_8742817_SNP [dm3] 2L_8742817_SNP [dm6]	A	T	2.348e^-4	0.858	INTERGENIC
3R	21344893	3R_21344893_SNP [dm3] 3R_25519171_SNP [dm6]	T	A	2.350e^-4	0.858	INTRON msi
3R	8517600	3R_8517600_SNP [dm3] 3R_12691878_SNP [dm6]	A	T	2.351e^-4	0.858	UTR_3_PRIME CG31347 UPSTREAM Su_fu_ INTRON Arp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	19356969	3R_19356969_SNP [dm3] 3R_23531247_SNP [dm6]	T	G	2.360e^-4	0.858	UPSTREAM CG10175 INTERGENIC
X	1150213	X_1150213_DEL [dm3] X_1256180_DEL [dm6]	GAAGCCACAAA...	G	2.362e^-4	0.858	INTRON Atf3
3L	22312914	3L_22312914_SNP [dm3] 3L_22319814_SNP [dm6]	C	A	2.365e^-4	0.858	INTRON Ten-m	TF binding site mE1_TFBS_inv
3L	957109	3L_957109_SNP [dm3] 3L_957109_SNP [dm6]	C	T	2.372e^-4	0.858	INTRON Glut1
3L	17672044	3L_17672044_DEL [dm3] 3L_17678944_DEL [dm6]	TATAAAAATGTATATAGATA...	T	2.373e^-4	0.858	INTRON CG34251
3L	22919731	3L_22919731_SNP [dm3] 3L_22926631_SNP [dm6]	A	C	2.375e^-4	0.858	INTERGENIC
3L	18961766	3L_18961766_SNP [dm3] 3L_18968666_SNP [dm6]	A	T	2.387e^-4	0.859	INTERGENIC
2R	17784866	2R_17784866_SNP [dm3] 2R_21897361_SNP [dm6]	T	C	2.391e^-4	0.859	INTRON Fili
3L	956975	3L_956975_SNP [dm3] 3L_956975_SNP [dm6]	G	C	2.401e^-4	0.859	INTRON Glut1
2R	4887439	2R_4887439_SNP [dm3] 2R_8999934_SNP [dm6]	C	T	2.403e^-4	0.859	INTRON Np
3L	5514232	3L_5514232_SNP [dm3] 3L_5521132_SNP [dm6]	A	T	2.407e^-4	0.859	INTRON Lkr
2L	7016878	2L_7016878_SNP [dm3] 2L_7016878_SNP [dm6]	C	T	2.414e^-4	0.859	NON_SYNONYMOUS_CODING ade3	TF binding site mE1_TFBS_chinmo
3R	26158904	3R_26158904_SNP [dm3] 3R_30333182_SNP [dm6]	A	G	2.426e^-4	0.859	INTRON hdc
3L	1098995	3L_1098995_SNP [dm3] 3L_1098995_SNP [dm6]	C	T	2.428e^-4	0.859	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	4733844	3L_4733844_SNP [dm3] 3L_4733844_SNP [dm6]	A	G	2.428e^-4	0.859	INTRON RhoGEF64C
3R	22024050	3R_22024050_SNP [dm3] 3R_26198328_SNP [dm6]	A	G	2.430e^-4	0.859	INTRON CR44320
3L	15076075	3L_15076075_SNP [dm3] 3L_15082975_SNP [dm6]	C	T	2.430e^-4	0.859	SYNONYMOUS_CODING cp309	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19884189	2R_19884189_SNP [dm3] 2R_23996666_SNP [dm6]	A	G	2.437e^-4	0.859	SYNONYMOUS_CODING Unc-89	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3260007	2R_3260007_SNP [dm3] 2R_7372502_SNP [dm6]	C	T	2.437e^-4	0.859	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	19050983	X_19050983_SNP [dm3] X_19156950_SNP [dm6]	C	G	2.441e^-4	0.859	INTRON RhoGAP18B	TF binding site mE1_TFBS_zfh1
3L	10016599	3L_10016599_SNP [dm3] 3L_10023499_SNP [dm6]	C	A	2.457e^-4	0.859	INTRON dpr6
2L	9505884	2L_9505884_SNP [dm3] 2L_9505884_SNP [dm6]	A	T	2.458e^-4	0.859	INTRON CG33298
2L	16328984	2L_16328984_SNP [dm3] 2L_16328984_SNP [dm6]	G	A	2.464e^-4	0.859	SYNONYMOUS_CODING mRpL4 UPSTREAM CG4440 DOWNSTREAM CG4278	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17910370	3R_17910370_SNP [dm3] 3R_22084648_SNP [dm6]	C	T	2.468e^-4	0.859	DOWNSTREAM CG5778 INTERGENIC
3L	4537467	3L_4537467_SNP [dm3] 3L_4537467_SNP [dm6]	G	A	2.470e^-4	0.859	SYNONYMOUS_CODING CG11353
3L	22844214	3L_22844214_SNP [dm3] 3L_22851114_SNP [dm6]	C	G	2.473e^-4	0.859	INTRON CR43426	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	1709931	3L_1709931_INS [dm3] 3L_1709931_INS [dm6]	A	AA	2.477e^-4	0.859	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	10713355	3L_10713355_SNP [dm3] 3L_10720255_SNP [dm6]	G	A	2.480e^-4	0.859	INTERGENIC
X	17029297	X_17029297_SNP [dm3] X_17135264_SNP [dm6]	G	A	2.484e^-4	0.859	UTR_3_PRIME CG5004 DOWNSTREAM mei-218
2L	3154418	2L_3154418_SNP [dm3] 2L_3154418_SNP [dm6]	T	C	2.488e^-4	0.859	INTRON Mad
X	7622608	X_7622608_SNP [dm3] X_7728575_SNP [dm6]	G	C	2.501e^-4	0.86	UPSTREAM CG12155 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	19377960	3R_19377960_SNP [dm3] 3R_23552238_SNP [dm6]	C	A	2.508e^-4	0.86	INTERGENIC
3R	26357185	3R_26357185_SNP [dm3] 3R_30531463_SNP [dm6]	A	G	2.510e^-4	0.86	INTRON CR45552 EXON CR45553
2L	22666551	2L_22666551_SNP [dm3] 2L_22773819_SNP [dm6]	T	G	2.510e^-4	0.86	INTERGENIC
3L	5650377	3L_5650377_SNP [dm3] 3L_5657277_SNP [dm6]	A	G	2.529e^-4	0.86	UTR_3_PRIME lin-28 UPSTREAM sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	6051132	3R_6051132_SNP [dm3] 3R_10225410_SNP [dm6]	T	C	2.535e^-4	0.86	UTR_3_PRIME CG34107 UPSTREAM CG42795 & 1 other
2R	9568981	2R_9568981_SNP [dm3] 2R_13681476_SNP [dm6]	G	T	2.551e^-4	0.86	INTRON fas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
X	18760241	X_18760241_SNP [dm3] X_18866208_SNP [dm6]	A	C	2.560e^-4	0.86	INTRON CG34401	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	939164	2L_939164_SNP [dm3] 2L_939164_SNP [dm6]	T	C	2.560e^-4	0.86	INTRON CG4341	TF binding site mE1_TFBS_chinmo
3R	24251488	3R_24251488_SNP [dm3] 3R_28425766_SNP [dm6]	C	G	2.564e^-4	0.86	INTRON beat-VI
2L	3710379	2L_3710379_SNP [dm3] 2L_3710379_SNP [dm6]	G	C	2.566e^-4	0.86	SYNONYMOUS_CODING cutlet	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18253390	X_18253390_SNP [dm3] X_18359357_SNP [dm6]	T	C	2.581e^-4	0.86	SYNONYMOUS_CODING CG6106
3R	26935968	3R_26935968_SNP [dm3] 3R_31110246_SNP [dm6]	T	A	2.589e^-4	0.86	INTERGENIC
2L	1678309	2L_1678309_SNP [dm3] 2L_1678309_SNP [dm6]	A	C	2.589e^-4	0.86	INTRON chinmo
3L	5334871	3L_5334871_SNP [dm3] 3L_5341771_SNP [dm6]	T	A	2.595e^-4	0.86	UPSTREAM tRNA:S7:64D INTERGENIC
2L	16328994	2L_16328994_SNP [dm3] 2L_16328994_SNP [dm6]	A	C	2.595e^-4	0.86	NON_SYNONYMOUS_CODING mRpL4 UPSTREAM CG4440 DOWNSTREAM CG4278	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20541372	3R_20541372_SNP [dm3] 3R_24715650_SNP [dm6]	T	A	2.595e^-4	0.86	INTRON CG13627	TF binding site mE1_TFBS_chinmo
3L	18133933	3L_18133933_SNP [dm3] 3L_18140833_SNP [dm6]	C	T	2.595e^-4	0.86	INTRON gk
X	7622632	X_7622632_SNP [dm3] X_7728599_SNP [dm6]	A	G	2.610e^-4	0.86	UPSTREAM CG12155 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	7590033	2R_7590033_SNP [dm3] 2R_11702528_SNP [dm6]	A	T	2.617e^-4	0.86	UPSTREAM Ir48b INTERGENIC
2L	16715980	2L_16715980_SNP [dm3] 2L_16715980_SNP [dm6]	A	G	2.618e^-4	0.86	UTR_5_PRIME CG31808 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	10171572	3R_10171572_SNP [dm3] 3R_14345850_SNP [dm6]	T	C	2.621e^-4	0.86	INTRON NK7.1
X	5371794	X_5371794_SNP [dm3] X_5477761_SNP [dm6]	A	C	2.626e^-4	0.86	INTRON SPR
2R	7592526	2R_7592526_SNP [dm3] 2R_11705021_SNP [dm6]	A	G	2.626e^-4	0.86	EXON CR45377
2R	19148246	2R_19148246_SNP [dm3] 2R_23260723_SNP [dm6]	C	T	2.630e^-4	0.86	INTERGENIC
2L	1184297	2L_1184297_SNP [dm3] 2L_1184297_SNP [dm6]	G	T	2.636e^-4	0.86	UPSTREAM CG5126 INTRON Tgt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4442973	3L_4442973_SNP [dm3] 3L_4442973_SNP [dm6]	A	G	2.650e^-4	0.86	INTERGENIC
2L	1757068	2L_1757068_SNP [dm3] 2L_1757068_SNP [dm6]	T	C	2.650e^-4	0.86	UPSTREAM Gr22f INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	14113782	2L_14113782_SNP [dm3] 2L_14113782_SNP [dm6]	T	C	2.662e^-4	0.86	INTERGENIC
2R	14352461	2R_14352461_SNP [dm3] 2R_18464956_SNP [dm6]	A	G	2.665e^-4	0.86	SYNONYMOUS_CODING CG30116
3L	4289334	3L_4289334_SNP [dm3] 3L_4289334_SNP [dm6]	C	T	2.675e^-4	0.86	NON_SYNONYMOUS_CODING Hexo1 DOWNSTREAM TfIIEbeta	TF binding site mE1_TFBS_chinmo
3L	5650381	3L_5650381_SNP [dm3] 3L_5657281_SNP [dm6]	C	G	2.681e^-4	0.86	UTR_3_PRIME lin-28 UPSTREAM sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	5458795	3R_5458795_SNP [dm3] 3R_9633073_SNP [dm6]	G	A	2.690e^-4	0.86	SYNONYMOUS_CODING SpdS DOWNSTREAM Scm EXON CR45053	TF binding site mE1_TFBS_cad
2R	7472368	2R_7472368_SNP [dm3] 2R_11584863_SNP [dm6]	G	A	2.692e^-4	0.86	SYNONYMOUS_CODING tou	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14984983	2R_14984983_SNP [dm3] 2R_19097478_SNP [dm6]	A	G	2.699e^-4	0.86	INTRON 5-HT1A
X	7622443	X_7622443_SNP [dm3] X_7728410_SNP [dm6]	G	A	2.710e^-4	0.86	UPSTREAM CG12155 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10626334	3L_10626334_SNP [dm3] 3L_10633234_SNP [dm6]	C	T	2.713e^-4	0.86	SYNONYMOUS_CODING hay INTRON CG34001
3L	9413013	3L_9413013_SNP [dm3] 3L_9419913_SNP [dm6]	C	T	2.717e^-4	0.86	UTR_5_PRIME CG3967 UPSTREAM CG3967 INTRON CG3967
3L	9331757	3L_9331757_SNP [dm3] 3L_9338657_SNP [dm6]	T	A	2.723e^-4	0.86	UPSTREAM PGRP-LC DOWNSTREAM PGRP-LA INTERGENIC
2L	1382376	2L_1382376_SNP [dm3] 2L_1382376_SNP [dm6]	T	G	2.737e^-4	0.86	NON_SYNONYMOUS_CODING lea EXON CR44897	TF binding site mE1_TFBS_cad
X	19659288	X_19659288_INS [dm3] X_19765255_INS [dm6]	A	ATTGGGCGA	2.738e^-4	0.86	UPSTREAM CG12702 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9924185	2R_9924185_SNP [dm3] 2R_14036680_SNP [dm6]	G	T	2.739e^-4	0.86	INTRON mam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18207542	3L_18207542_SNP [dm3] 3L_18214442_SNP [dm6]	G	A	2.742e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	9459640	X_9459640_SNP [dm3] X_9565607_SNP [dm6]	C	T	2.742e^-4	0.86	SYNONYMOUS_CODING Cubn
2L	7099759	2L_7099759_SNP [dm3] 2L_7099759_SNP [dm6]	T	C	2.758e^-4	0.86	UTR_3_PRIME Pvf3
3R	10316785	3R_10316785_SNP [dm3] 3R_14491063_SNP [dm6]	T	C	2.760e^-4	0.86	INTERGENIC
2L	8167858	2L_8167858_SNP [dm3] 2L_8167858_SNP [dm6]	G	C	2.764e^-4	0.86	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11895822	2L_11895822_SNP [dm3] 2L_11895822_SNP [dm6]	T	A	2.767e^-4	0.86	INTRON Pde1c
3L	10555476	3L_10555476_SNP [dm3] 3L_10562376_SNP [dm6]	A	G	2.768e^-4	0.86	INTRON A2bp1
2R	20109723	2R_20109723_SNP [dm3] 2R_24222200_SNP [dm6]	C	T	2.784e^-4	0.86	INTRON CG30419
3L	2164106	3L_2164106_SNP [dm3] 3L_2164106_SNP [dm6]	C	T	2.787e^-4	0.86	UPSTREAM CG15822 INTERGENIC
2L	517903	2L_517903_INS [dm3] 2L_517903_INS [dm6]	T	TT	2.787e^-4	0.86	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	10288853	3R_10288853_SNP [dm3] 3R_14463131_SNP [dm6]	A	T	2.789e^-4	0.86	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26626899	3R_26626899_DEL [dm3] 3R_30801177_DEL [dm6]	TG	T	2.790e^-4	0.86	INTRON wts
X	4473277	X_4473277_INS [dm3] X_4579244_INS [dm6]	A	AA	2.792e^-4	0.86	INTRON CR32773
3L	5334873	3L_5334873_SNP [dm3] 3L_5341773_SNP [dm6]	G	A	2.792e^-4	0.86	UPSTREAM tRNA:S7:64D INTERGENIC
3R	6827605	3R_6827605_SNP [dm3] 3R_11001883_SNP [dm6]	C	G	2.796e^-4	0.86	INTRON CG34114
X	7621051	X_7621051_SNP [dm3] X_7727018_SNP [dm6]	G	A	2.799e^-4	0.86	SYNONYMOUS_CODING NELF-B	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8742884	2L_8742884_SNP [dm3] 2L_8742884_SNP [dm6]	T	A	2.802e^-4	0.86	INTERGENIC
2R	6090413	2R_6090413_SNP [dm3] 2R_10202908_SNP [dm6]	A	G	2.806e^-4	0.86	INTERGENIC
3L	15488911	3L_15488911_SNP [dm3] 3L_15495811_SNP [dm6]	A	T	2.807e^-4	0.86	UPSTREAM CG12355 & 1 other INTERGENIC
3L	15932954	3L_15932954_DEL [dm3] 3L_15939854_DEL [dm6]	AA	A	2.808e^-4	0.86	INTRON Pka-C3
3L	4011471	3L_4011471_SNP [dm3] 3L_4011471_SNP [dm6]	A	C	2.811e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15068574	3R_15068574_SNP [dm3] 3R_19242852_SNP [dm6]	T	A	2.819e^-4	0.86	INTRON unc79	TF binding site mE1_TFBS_cad
X	6643083	X_6643083_INS [dm3] X_6749050_INS [dm6]	T	TCAGAGAT	2.820e^-4	0.86	INTRON CG14439
2R	6655860	2R_6655860_SNP [dm3] 2R_10768355_SNP [dm6]	C	T	2.821e^-4	0.86	INTRON CG33144
2L	10027736	2L_10027736_SNP [dm3] 2L_10027736_SNP [dm6]	A	G	2.824e^-4	0.86	SYNONYMOUS_CODING CG13127
3L	21581659	3L_21581659_SNP [dm3] 3L_21588559_SNP [dm6]	C	T	2.828e^-4	0.86	INTRON TfAP-2
3R	16246720	3R_16246720_DEL [dm3] 3R_20420998_DEL [dm6]	AATCAT	A	2.829e^-4	0.86	INTRON Gfrl
3L	10558596	3L_10558596_SNP [dm3] 3L_10565496_SNP [dm6]	T	C	2.830e^-4	0.86	INTRON A2bp1
X	7621000	X_7621000_SNP [dm3] X_7726967_SNP [dm6]	G	A	2.838e^-4	0.86	SYNONYMOUS_CODING NELF-B	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	10134747	2L_10134747_SNP [dm3] 2L_10134747_SNP [dm6]	G	T	2.841e^-4	0.86	INTRON CG44153
2R	7586745	2R_7586745_SNP [dm3] 2R_11699240_SNP [dm6]	C	T	2.850e^-4	0.86	EXON Ir48a
2R	14799809	2R_14799809_SNP [dm3] 2R_18912304_SNP [dm6]	T	A	2.873e^-4	0.86	UPSTREAM Vha100-3 INTRON sano
3R	14187706	3R_14187706_SNP [dm3] 3R_18361984_SNP [dm6]	A	C	2.882e^-4	0.86	UPSTREAM CG7669 DOWNSTREAM CR45634 INTERGENIC
3R	16942187	3R_16942187_SNP [dm3] 3R_21116465_SNP [dm6]	G	A	2.887e^-4	0.86	SYNONYMOUS_CODING ppan DOWNSTREAM Rab11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18648148	3L_18648148_SNP [dm3] 3L_18655048_SNP [dm6]	A	C	2.890e^-4	0.86	INTRON MYPT-75D
3L	14182082	3L_14182082_SNP [dm3] 3L_14188982_SNP [dm6]	T	G	2.894e^-4	0.86	INTRON nan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	9593473	2L_9593473_SNP [dm3] 2L_9593473_SNP [dm6]	C	T	2.896e^-4	0.86	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5335123	3L_5335123_SNP [dm3] 3L_5342023_SNP [dm6]	T	G	2.898e^-4	0.86	UPSTREAM tRNA:S7:64D INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10179616	3R_10179616_SNP [dm3] 3R_14353894_SNP [dm6]	T	A	2.901e^-4	0.86	INTRON NK7.1
2L	698684	2L_698684_DEL [dm3] 2L_698684_DEL [dm6]	AA	A	2.902e^-4	0.86	INTRON ds
2R	7591416	2R_7591416_SNP [dm3] 2R_11703911_SNP [dm6]	G	T	2.902e^-4	0.86	DOWNSTREAM CR45377 INTERGENIC
2L	11294621	2L_11294621_SNP [dm3] 2L_11294621_SNP [dm6]	G	C	2.903e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2438169	3L_2438169_MNP [dm3] 3L_2438169_MNP [dm6]	ACG	TTC	2.910e^-4	0.86	INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	2389910	2L_2389910_SNP [dm3] 2L_2389910_SNP [dm6]	A	G	2.951e^-4	0.86	SYNONYMOUS_CODING CG43750
2L	8538437	2L_8538437_SNP [dm3] 2L_8538437_SNP [dm6]	A	G	2.957e^-4	0.86	DOWNSTREAM CG17834 INTRON CG17834
2L	8742926	2L_8742926_SNP [dm3] 2L_8742926_SNP [dm6]	C	G	2.967e^-4	0.86	INTERGENIC
2R	18795810	2R_18795810_SNP [dm3] 2R_22908287_SNP [dm6]	G	A	2.973e^-4	0.86	INTRON nahoda	TF binding site mE1_TFBS_chinmo
3R	5487709	3R_5487709_SNP [dm3] 3R_9661987_SNP [dm6]	C	T	2.986e^-4	0.86	SYNONYMOUS_CODING CG9492	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3274752	2R_3274752_SNP [dm3] 2R_7387247_SNP [dm6]	T	G	2.989e^-4	0.86	UTR_5_PRIME CG11107 UPSTREAM CG11107 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	15932981	3L_15932981_SNP [dm3] 3L_15939881_SNP [dm6]	C	T	2.997e^-4	0.86	INTRON Pka-C3
2L	19968199	2L_19968199_SNP [dm3] 2L_19968199_SNP [dm6]	A	G	2.998e^-4	0.86	UPSTREAM Hf DOWNSTREAM CG43861 INTERGENIC
3L	22333316	3L_22333316_SNP [dm3] 3L_22340216_SNP [dm6]	T	C	3.001e^-4	0.86	INTRON Ten-m	TF binding site mE1_TFBS_HSA
X	9096260	X_9096260_SNP [dm3] X_9202227_SNP [dm6]	A	G	3.004e^-4	0.86	UPSTREAM su_r_ INTERGENIC
3R	14181533	3R_14181533_SNP [dm3] 3R_18355811_SNP [dm6]	C	T	3.021e^-4	0.86	UTR_5_PRIME CG15803	TF binding site mE1_TFBS_chinmo
3L	5661096	3L_5661096_SNP [dm3] 3L_5667996_SNP [dm6]	C	A	3.026e^-4	0.86	INTRON sif
3L	2687377	3L_2687377_SNP [dm3] 3L_2687377_SNP [dm6]	C	A	3.029e^-4	0.86	INTRON Fife
3L	1346772	3L_1346772_SNP [dm3] 3L_1346772_SNP [dm6]	C	T	3.034e^-4	0.86	INTRON Ptp61F	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	16189976	3L_16189976_SNP [dm3] 3L_16196876_SNP [dm6]	G	C	3.035e^-4	0.86	UPSTREAM CG33687 EXON CR45437
3L	10624552	3L_10624552_SNP [dm3] 3L_10631452_SNP [dm6]	C	T	3.044e^-4	0.86	SYNONYMOUS_CODING hay UPSTREAM CG42535 INTRON CG34001	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Ubx
2L	16758419	2L_16758419_SNP [dm3] 2L_16758419_SNP [dm6]	T	G	3.050e^-4	0.86	SYNONYMOUS_CODING ppk17 DOWNSTREAM yellow-b
3L	4293292	3L_4293292_SNP [dm3] 3L_4293292_SNP [dm6]	A	T	3.053e^-4	0.86	UTR_3_PRIME CG1319 DOWNSTREAM dyl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	18253095	X_18253095_SNP [dm3] X_18359062_SNP [dm6]	T	C	3.053e^-4	0.86	SPLICE_SITE_REGION CG6106 INTRON CG6106	TF binding site mE1_TFBS_HSA
X	16795961	X_16795961_SNP [dm3] X_16901928_SNP [dm6]	A	T	3.056e^-4	0.86	EXON CR44754
2L	8741274	2L_8741274_SNP [dm3] 2L_8741274_SNP [dm6]	T	A	3.075e^-4	0.86	UPSTREAM raw INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_kn
3R	16890366	3R_16890366_SNP [dm3] 3R_21064644_SNP [dm6]	G	A	3.077e^-4	0.86	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2R	16436597	2R_16436597_SNP [dm3] 2R_20549092_SNP [dm6]	C	T	3.093e^-4	0.86	NON_SYNONYMOUS_CODING Obp57d UTR_3_PRIME Cpr57A UPSTREAM Obp57e DOWNSTREAM Cpr57A	regulatory region REDfly_CRMs
3R	14231199	3R_14231199_SNP [dm3] 3R_18405477_SNP [dm6]	T	A	3.096e^-4	0.86	DOWNSTREAM koko & 1 other INTRON CG7685	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15068553	3R_15068553_SNP [dm3] 3R_19242831_SNP [dm6]	A	G	3.103e^-4	0.86	SPLICE_SITE_REGION unc79 INTRON unc79	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	7170835	3L_7170835_SNP [dm3] 3L_7177735_SNP [dm6]	C	T	3.104e^-4	0.86	INTRON Dscam2
X	20575441	X_20575441_SNP [dm3] X_20704414_SNP [dm6]	G	A	3.106e^-4	0.86	INTERGENIC	regulatory region REDfly_CRMs
2L	16537084	2L_16537084_SNP [dm3] 2L_16537084_SNP [dm6]	T	A	3.111e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	2952377	2R_2952377_SNP [dm3] 2R_7064872_SNP [dm6]	A	G	3.116e^-4	0.86	INTRON Tsp42Er
X	7622492	X_7622492_SNP [dm3] X_7728459_SNP [dm6]	A	T	3.117e^-4	0.86	UPSTREAM CG12155 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	696649	2L_696649_SNP [dm3] 2L_696649_SNP [dm6]	T	A	3.119e^-4	0.86	INTRON ds	TF binding site mE1_TFBS_Trl
3L	2999416	3L_2999416_SNP [dm3] 3L_2999416_SNP [dm6]	C	T	3.122e^-4	0.86	INTERGENIC
3L	14181914	3L_14181914_SNP [dm3] 3L_14188814_SNP [dm6]	G	A	3.125e^-4	0.86	SYNONYMOUS_CODING nan	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	17760362	2R_17760362_SNP [dm3] 2R_21872857_SNP [dm6]	C	G	3.126e^-4	0.86	INTRON Fili	TF binding site mE1_TFBS_D mE1_TFBS_sens
2L	637988	2L_637988_SNP [dm3] 2L_637988_SNP [dm6]	T	A	3.139e^-4	0.86	INTERGENIC
2R	5326573	2R_5326573_SNP [dm3] 2R_9439068_SNP [dm6]	C	A	3.144e^-4	0.86	INTRON ced-6	TF binding site mE1_TFBS_cad
3L	5865408	3L_5865408_SNP [dm3] 3L_5872308_SNP [dm6]	A	G	3.146e^-4	0.86	NON_SYNONYMOUS_CODING CG5568
3R	8679040	3R_8679040_SNP [dm3] 3R_12853318_SNP [dm6]	C	T	3.148e^-4	0.86	INTERGENIC
3L	10759221	3L_10759221_SNP [dm3] 3L_10766121_SNP [dm6]	A	T	3.154e^-4	0.86	INTERGENIC
3R	3720934	3R_3720934_SNP [dm3] 3R_7895212_SNP [dm6]	C	A	3.155e^-4	0.86	UPSTREAM wtrw INTRON mRpS9 & 1 other
2R	9259124	2R_9259124_SNP [dm3] 2R_13371619_SNP [dm6]	G	C	3.156e^-4	0.86	INTERGENIC
2R	19261346	2R_19261346_SNP [dm3] 2R_23373823_SNP [dm6]	T	C	3.159e^-4	0.86	NON_SYNONYMOUS_CODING Golgin245	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9599949	2L_9599949_SNP [dm3] 2L_9599949_SNP [dm6]	C	G	3.161e^-4	0.86	INTRON CG4382	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9283814	3L_9283814_SNP [dm3] 3L_9290714_SNP [dm6]	G	C	3.171e^-4	0.86	INTERGENIC
3L	14923942	3L_14923942_SNP [dm3] 3L_14930842_SNP [dm6]	T	A	3.175e^-4	0.86	INTRON DCX-EMAP
2R	16144931	2R_16144931_SNP [dm3] 2R_20257426_SNP [dm6]	C	A	3.177e^-4	0.86	UPSTREAM Hsl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	15321347	3L_15321347_SNP [dm3] 3L_15328247_SNP [dm6]	C	A	3.180e^-4	0.86	INTERGENIC
3R	4338778	3R_4338778_SNP [dm3] 3R_8513056_SNP [dm6]	T	C	3.190e^-4	0.86	UPSTREAM Or85c INTERGENIC
2L	2798026	2L_2798026_SNP [dm3] 2L_2798026_SNP [dm6]	T	A	3.199e^-4	0.86	INTRON Syt1 EXON CR43821	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	18649213	3L_18649213_SNP [dm3] 3L_18656113_SNP [dm6]	C	T	3.210e^-4	0.86	INTRON MYPT-75D
2L	9067516	2L_9067516_SNP [dm3] 2L_9067516_SNP [dm6]	C	T	3.215e^-4	0.86	INTRON CG31708
3R	7110528	3R_7110528_SNP [dm3] 3R_11284806_SNP [dm6]	C	A	3.216e^-4	0.86	INTRON CR31386	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	4216377	X_4216377_SNP [dm3] X_4322344_SNP [dm6]	T	G	3.220e^-4	0.86	UPSTREAM norpA & 1 other DOWNSTREAM CG2982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
X	4216551	X_4216551_SNP [dm3] X_4322518_SNP [dm6]	C	A	3.220e^-4	0.86	UPSTREAM norpA & 1 other DOWNSTREAM CG2982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
X	2691759	X_2691759_SNP [dm3] X_2797726_SNP [dm6]	T	C	3.220e^-4	0.86	INTRON kirre	regulatory region REDfly_CRMs
2L	8370138	2L_8370138_SNP [dm3] 2L_8370138_SNP [dm6]	C	G	3.221e^-4	0.86	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
3R	9820312	3R_9820312_SNP [dm3] 3R_13994590_SNP [dm6]	A	T	3.222e^-4	0.86	INTRON rdx
X	16812326	X_16812326_SNP [dm3] X_16918293_SNP [dm6]	A	C	3.227e^-4	0.86	INTRON CG4928
3R	22017000	3R_22017000_INS [dm3] 3R_26191278_INS [dm6]	A	ATA	3.227e^-4	0.86	UPSTREAM CG34129 INTERGENIC
3L	10626097	3L_10626097_SNP [dm3] 3L_10632997_SNP [dm6]	A	G	3.231e^-4	0.86	SYNONYMOUS_CODING hay INTRON CG34001	TF binding site mE1_TFBS_sens
3L	19418081	3L_19418081_SNP [dm3] 3L_19424981_SNP [dm6]	T	G	3.232e^-4	0.86	UPSTREAM CR32205 DOWNSTREAM CG33255 & 1 other INTERGENIC
2L	3634303	2L_3634303_SNP [dm3] 2L_3634303_SNP [dm6]	C	T	3.237e^-4	0.86	SYNONYMOUS_CODING for	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA
3L	11168229	3L_11168229_SNP [dm3] 3L_11175129_SNP [dm6]	T	A	3.244e^-4	0.86	SYNONYMOUS_CODING CG14142 UTR_3_PRIME CG14142
2L	2705650	2L_2705650_SNP [dm3] 2L_2705650_SNP [dm6]	T	C	3.248e^-4	0.86	INTRON CG31690
2L	7705629	2L_7705629_SNP [dm3] 2L_7705629_SNP [dm6]	A	G	3.249e^-4	0.86	INTRON Tep3
3L	19423666	3L_19423666_SNP [dm3] 3L_19430566_SNP [dm6]	A	T	3.250e^-4	0.86	INTERGENIC
2R	6580175	2R_6580175_SNP [dm3] 2R_10692670_SNP [dm6]	C	T	3.252e^-4	0.86	INTRON stan	enhancer mE1_CBP_Enhancers
3L	11926285	3L_11926285_SNP [dm3] 3L_11933185_SNP [dm6]	C	A	3.256e^-4	0.86	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	20080577	3L_20080577_SNP [dm3] 3L_20087477_SNP [dm6]	T	A	3.257e^-4	0.86	INTRON sNPF-R
X	6643082	X_6643082_INS [dm3] X_6749049_INS [dm6]	A	AACAGAGA	3.262e^-4	0.86	INTRON CG14439
3L	16202346	3L_16202346_SNP [dm3] 3L_16209246_SNP [dm6]	C	T	3.280e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_cad
2R	7586859	2R_7586859_SNP [dm3] 2R_11699354_SNP [dm6]	C	T	3.286e^-4	0.86	EXON Ir48a
2R	10821694	2R_10821694_SNP [dm3] 2R_14934189_SNP [dm6]	C	A	3.288e^-4	0.86	UPSTREAM CG10253 DOWNSTREAM CG12853 INTRON CG10253	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	14572856	2R_14572856_SNP [dm3] 2R_18685351_SNP [dm6]	G	A	3.295e^-4	0.86	SYNONYMOUS_CODING CG44433	TF binding site mE1_TFBS_sens
2R	13411505	2R_13411505_SNP [dm3] 2R_17524000_SNP [dm6]	C	T	3.295e^-4	0.86	INTRON Patronin	TF binding site mE1_TFBS_cad
2L	638044	2L_638044_SNP [dm3] 2L_638044_SNP [dm6]	A	G	3.300e^-4	0.86	INTERGENIC
X	21923107	X_21923107_SNP [dm3] X_22521271_SNP [dm6]	A	C	3.302e^-4	0.86	INTRON CG17600
3R	4338756	3R_4338756_SNP [dm3] 3R_8513034_SNP [dm6]	A	G	3.303e^-4	0.86	UPSTREAM Or85c INTERGENIC
3L	18371152	3L_18371152_SNP [dm3] 3L_18378052_SNP [dm6]	A	C	3.304e^-4	0.86	INTERGENIC
X	13037316	X_13037316_SNP [dm3] X_13143283_SNP [dm6]	G	A	3.305e^-4	0.86	INTRON CG32645	TF binding site BDTNP1_TFBS_dl
2R	20109843	2R_20109843_SNP [dm3] 2R_24222320_SNP [dm6]	T	C	3.306e^-4	0.86	INTRON CG30419
X	4193748	X_4193748_SNP [dm3] X_4299715_SNP [dm6]	G	A	3.307e^-4	0.86	DOWNSTREAM CG12692 INTERGENIC
3L	22223959	3L_22223959_SNP [dm3] 3L_22230859_SNP [dm6]	T	C	3.313e^-4	0.86	INTRON olf413
X	7994659	X_7994659_INS [dm3] X_8100626_INS [dm6]	T	TTT	3.318e^-4	0.86	UPSTREAM CG2258 INTRON CG2258	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	16177796	2R_16177796_SNP [dm3] 2R_20290291_SNP [dm6]	T	A	3.322e^-4	0.86	INTRON Cpr56F & 1 other
X	17144687	X_17144687_SNP [dm3] X_17250654_SNP [dm6]	T	C	3.325e^-4	0.86	NON_SYNONYMOUS_CODING f	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	7622694	X_7622694_SNP [dm3] X_7728661_SNP [dm6]	C	G	3.326e^-4	0.86	UPSTREAM CG12155 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25526298	3R_25526298_DEL [dm3] 3R_29700576_DEL [dm6]	CTT	C	3.348e^-4	0.86	INTERGENIC
X	4216374	X_4216374_SNP [dm3] X_4322341_SNP [dm6]	G	A	3.356e^-4	0.86	UPSTREAM norpA & 1 other DOWNSTREAM CG2982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2R	7128186	2R_7128186_SNP [dm3] 2R_11240681_SNP [dm6]	G	C	3.363e^-4	0.86	UPSTREAM CG13215 INTERGENIC
3L	22351661	3L_22351661_SNP [dm3] 3L_22358561_SNP [dm6]	A	G	3.365e^-4	0.86	INTRON Ten-m
2R	16354692	2R_16354692_SNP [dm3] 2R_20467187_SNP [dm6]	A	C	3.367e^-4	0.86	INTRON CG12484
3L	9514598	3L_9514598_DEL [dm3] 3L_9521498_DEL [dm6]	CTACAAGGCGC...	T	3.381e^-4	0.86	INTRON CG33700
2L	4228231	2L_4228231_SNP [dm3] 2L_4228231_SNP [dm6]	G	A	3.387e^-4	0.86	SYNONYMOUS_CODING RpL40 UPSTREAM CR44608	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	11515063	3L_11515063_SNP [dm3] 3L_11521963_SNP [dm6]	T	A	3.393e^-4	0.86	SYNONYMOUS_CODING CG11714 DOWNSTREAM Mob2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4302639	3L_4302639_SNP [dm3] 3L_4302639_SNP [dm6]	A	G	3.394e^-4	0.86	INTRON dyl
3R	26123209	3R_26123209_DEL [dm3] 3R_30297487_DEL [dm6]	AA	G	3.396e^-4	0.86	INTRON hdc	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14942924	3L_14942924_SNP [dm3] 3L_14949824_SNP [dm6]	G	T	3.409e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17441669	3L_17441669_INS [dm3] 3L_17448569_INS [dm6]	A	AA	3.410e^-4	0.86	INTRON CG18265
2R	14049467	2R_14049467_SNP [dm3] 2R_18161962_SNP [dm6]	G	A	3.410e^-4	0.86	SYNONYMOUS_CODING CG10915
X	4216452	X_4216452_SNP [dm3] X_4322419_SNP [dm6]	T	A	3.412e^-4	0.86	UPSTREAM norpA & 1 other DOWNSTREAM CG2982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3L	14859451	3L_14859451_SNP [dm3] 3L_14866351_SNP [dm6]	C	T	3.419e^-4	0.86	SYNONYMOUS_CODING CG17839
2R	16144977	2R_16144977_SNP [dm3] 2R_20257472_SNP [dm6]	A	T	3.425e^-4	0.86	UPSTREAM Hsl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	667188	3L_667188_SNP [dm3] 3L_667188_SNP [dm6]	A	G	3.426e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14950074	3L_14950074_SNP [dm3] 3L_14956974_SNP [dm6]	T	C	3.429e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	11221585	3R_11221585_SNP [dm3] 3R_15395863_SNP [dm6]	C	A	3.436e^-4	0.86	INTRON Rbp
2R	18206349	2R_18206349_SNP [dm3] 2R_22318844_SNP [dm6]	A	G	3.437e^-4	0.86	DOWNSTREAM CR44756 INTRON Gp150	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_Trl mE1_TFBS_zfh1
3L	22536112	3L_22536112_SNP [dm3] 3L_22543012_SNP [dm6]	T	A	3.439e^-4	0.86	INTERGENIC
2L	1184003	2L_1184003_DEL [dm3] 2L_1184003_DEL [dm6]	GG	G	3.443e^-4	0.86	UTR_5_PRIME CG5126 UPSTREAM Tgt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	4813912	2L_4813912_SNP [dm3] 2L_4813912_SNP [dm6]	T	C	3.448e^-4	0.86	INTRON CG15629
3L	11583935	3L_11583935_SNP [dm3] 3L_11590835_SNP [dm6]	C	G	3.452e^-4	0.86	DOWNSTREAM CG33268 & 1 other INTERGENIC
3R	22032231	3R_22032231_SNP [dm3] 3R_26206509_SNP [dm6]	C	G	3.453e^-4	0.86	INTRON CR44320
3R	22032256	3R_22032256_SNP [dm3] 3R_26206534_SNP [dm6]	G	A	3.453e^-4	0.86	INTRON CR44320
2R	17760433	2R_17760433_SNP [dm3] 2R_21872928_SNP [dm6]	A	T	3.453e^-4	0.86	INTRON Fili	TF binding site mE1_TFBS_D
3L	11168253	3L_11168253_SNP [dm3] 3L_11175153_SNP [dm6]	A	G	3.454e^-4	0.86	SYNONYMOUS_CODING CG14142 UTR_3_PRIME CG14142
X	14599146	X_14599146_SNP [dm3] X_14705113_SNP [dm6]	C	A	3.462e^-4	0.86	INTRON NetB
2L	9538113	2L_9538113_DEL [dm3] 2L_9538113_DEL [dm6]	ATGATGA	A	3.478e^-4	0.86
2L	3718317	2L_3718317_SNP [dm3] 2L_3718317_SNP [dm6]	G	A	3.481e^-4	0.86	UTR_5_PRIME Shaw UPSTREAM lectin-24A
3L	677256	3L_677256_SNP [dm3] 3L_677256_SNP [dm6]	G	T	3.484e^-4	0.86	DOWNSTREAM CG17129 INTERGENIC
3L	13537647	3L_13537647_SNP [dm3] 3L_13544547_SNP [dm6]	A	T	3.488e^-4	0.86	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	7707180	2L_7707180_SNP [dm3] 2L_7707180_SNP [dm6]	G	C	3.489e^-4	0.86	SYNONYMOUS_CODING Tep3 DOWNSTREAM CR44990	TF binding site mE1_TFBS_inv
3L	11865059	3L_11865059_SNP [dm3] 3L_11871959_SNP [dm6]	G	A	3.490e^-4	0.86	UPSTREAM CG5906 INTRON CG44837
3L	5850277	3L_5850277_SNP [dm3] 3L_5857177_SNP [dm6]	C	T	3.497e^-4	0.86	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	14947069	3L_14947069_SNP [dm3] 3L_14953969_SNP [dm6]	A	T	3.501e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15090489	2L_15090489_SNP [dm3] 2L_15090489_SNP [dm6]	T	A	3.508e^-4	0.86	INTRON CG15270
3L	5338990	3L_5338990_SNP [dm3] 3L_5345890_SNP [dm6]	G	A	3.516e^-4	0.86	SYNONYMOUS_CODING lama
2L	1100900	2L_1100900_SNP [dm3] 2L_1100900_SNP [dm6]	C	G	3.521e^-4	0.86	INTRON CG4629
3L	11930232	3L_11930232_SNP [dm3] 3L_11937132_SNP [dm6]	C	T	3.521e^-4	0.86	SYNONYMOUS_CODING CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20944679	X_20944679_SNP [dm3] X_21073652_SNP [dm6]	T	C	3.533e^-4	0.86	INTRON bves
3L	9719800	3L_9719800_SNP [dm3] 3L_9726700_SNP [dm6]	T	C	3.534e^-4	0.86	UTR_3_PRIME defl UPSTREAM Naa60	TF binding site mE1_TFBS_HSA
X	21861183	X_21861183_SNP [dm3] X_22459347_SNP [dm6]	G	C	3.544e^-4	0.86	INTRON CG14619	transposable element FlyBase
X	21923143	X_21923143_SNP [dm3] X_22521307_SNP [dm6]	C	T	3.546e^-4	0.86	INTRON CG17600
3R	14187742	3R_14187742_SNP [dm3] 3R_18362020_SNP [dm6]	A	C	3.548e^-4	0.86	UTR_5_PRIME CG7669 DOWNSTREAM CR45634
X	4216591	X_4216591_SNP [dm3] X_4322558_SNP [dm6]	T	G	3.549e^-4	0.86	UPSTREAM norpA & 1 other DOWNSTREAM CG2982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3L	9514658	3L_9514658_SNP [dm3] 3L_9521558_SNP [dm6]	G	A	3.560e^-4	0.86	INTRON CG33700
2L	3719729	2L_3719729_SNP [dm3] 2L_3719729_SNP [dm6]	A	C	3.563e^-4	0.86	INTRON Shaw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10017388	3L_10017388_SNP [dm3] 3L_10024288_SNP [dm6]	G	T	3.568e^-4	0.86	INTRON dpr6
3L	5167431	3L_5167431_INS [dm3] 3L_5174331_INS [dm6]	C	CCC	3.570e^-4	0.86	INTRON shep
3R	23931712	3R_23931712_SNP [dm3] 3R_28105990_SNP [dm6]	A	C	3.572e^-4	0.86	INTERGENIC
X	9096942	X_9096942_SNP [dm3] X_9202909_SNP [dm6]	T	C	3.572e^-4	0.86	INTERGENIC
3R	23018851	3R_23018851_SNP [dm3] 3R_27193129_SNP [dm6]	A	C	3.574e^-4	0.86	INTRON Ser	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	3154423	2L_3154423_SNP [dm3] 2L_3154423_SNP [dm6]	G	C	3.579e^-4	0.86	INTRON Mad
2L	7701962	2L_7701962_SNP [dm3] 2L_7701962_SNP [dm6]	T	G	3.582e^-4	0.86	UPSTREAM Tep2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10129654	3L_10129654_SNP [dm3] 3L_10136554_SNP [dm6]	A	G	3.587e^-4	0.86	INTRON dpr6
3R	15556066	3R_15556066_SNP [dm3] 3R_19730344_SNP [dm6]	A	G	3.598e^-4	0.86	UPSTREAM GluClalpha INTERGENIC	TF binding site mE1_TFBS_Trl
3R	5022561	3R_5022561_SNP [dm3] 3R_9196839_SNP [dm6]	A	T	3.599e^-4	0.86	INTRON pum
2R	12264856	2R_12264856_SNP [dm3] 2R_16377351_SNP [dm6]	G	C	3.604e^-4	0.86	INTERGENIC
3L	14827250	3L_14827250_SNP [dm3] 3L_14834150_SNP [dm6]	C	T	3.605e^-4	0.86	INTRON CG17839
3R	3370557	3R_3370557_SNP [dm3] 3R_7544835_SNP [dm6]	G	A	3.606e^-4	0.86	SYNONYMOUS_CODING alpha-Est2 DOWNSTREAM alpha-Est1
X	8741637	X_8741637_SNP [dm3] X_8847604_SNP [dm6]	T	C	3.609e^-4	0.86	INTRON CG12075
2R	7752206	2R_7752206_SNP [dm3] 2R_11864701_SNP [dm6]	C	G	3.610e^-4	0.86	DOWNSTREAM Damm INTRON CG42531
3L	18945162	3L_18945162_SNP [dm3] 3L_18952062_SNP [dm6]	A	T	3.612e^-4	0.86	INTRON CG6836
3R	25019670	3R_25019670_SNP [dm3] 3R_29193948_SNP [dm6]	T	C	3.614e^-4	0.86	INTRON CG14509
2R	4076046	2R_4076046_SNP [dm3] 2R_8188541_SNP [dm6]	A	G	3.616e^-4	0.86	INTRON LRP1	TF binding site mE1_TFBS_cad
X	4216621	X_4216621_SNP [dm3] X_4322588_SNP [dm6]	C	T	3.623e^-4	0.86	UPSTREAM norpA & 1 other DOWNSTREAM CG2982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3L	11841321	3L_11841321_SNP [dm3] 3L_11848221_SNP [dm6]	T	G	3.637e^-4	0.86	UPSTREAM CG12521 INTERGENIC	transposable element FlyBase
X	21952963	X_21952963_SNP [dm3] X_22551127_SNP [dm6]	C	T	3.645e^-4	0.86	INTERGENIC
3L	16576258	3L_16576258_SNP [dm3] 3L_16583158_SNP [dm6]	C	A	3.649e^-4	0.86	NON_SYNONYMOUS_CODING Rpn12 UPSTREAM CG4169 DOWNSTREAM CR43727	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	11628097	2R_11628097_SNP [dm3] 2R_15740592_SNP [dm6]	C	T	3.652e^-4	0.86	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16402864	2L_16402864_SNP [dm3] 2L_16402864_SNP [dm6]	T	C	3.659e^-4	0.86	INTRON CG5888
3R	15898828	3R_15898828_SNP [dm3] 3R_20073106_SNP [dm6]	T	G	3.663e^-4	0.86	INTERGENIC
X	7616491	X_7616491_SNP [dm3] X_7722458_SNP [dm6]	C	T	3.665e^-4	0.86	SYNONYMOUS_CODING Hira	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	18648339	3L_18648339_SNP [dm3] 3L_18655239_SNP [dm6]	G	T	3.669e^-4	0.86	INTRON MYPT-75D
X	6562467	X_6562467_SNP [dm3] X_6668434_SNP [dm6]	C	T	3.672e^-4	0.86	DOWNSTREAM CG3198 & 1 other INTERGENIC
2L	3267399	2L_3267399_SNP [dm3] 2L_3267399_SNP [dm6]	T	A	3.673e^-4	0.86	UPSTREAM CR44484 INTERGENIC
3R	14728278	3R_14728278_SNP [dm3] 3R_18902556_SNP [dm6]	G	C	3.674e^-4	0.86	SYNONYMOUS_CODING CG34284 UPSTREAM CG14294
X	4300052	X_4300052_SNP [dm3] X_4406019_SNP [dm6]	A	G	3.678e^-4	0.86	INTRON CR32773	TF binding site mE1_TFBS_chinmo
3L	17672030	3L_17672030_SNP [dm3] 3L_17678930_SNP [dm6]	A	G	3.679e^-4	0.86	INTRON CG34251
3R	22794158	3R_22794158_INS [dm3] 3R_26968436_INS [dm6]	T	TT	3.687e^-4	0.86	INTRON CG5521
3L	16331253	3L_16331253_SNP [dm3] 3L_16338153_SNP [dm6]	G	C	3.688e^-4	0.86	UPSTREAM CG4998 INTERGENIC
2L	7944987	2L_7944987_SNP [dm3] 2L_7944987_SNP [dm6]	G	A	3.688e^-4	0.86	INTRON Snoo
3L	5684043	3L_5684043_SNP [dm3] 3L_5690943_SNP [dm6]	A	G	3.689e^-4	0.86	UPSTREAM sif INTRON sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	15917209	2L_15917209_SNP [dm3] 2L_15917209_SNP [dm6]	T	C	3.690e^-4	0.86	SYNONYMOUS_CODING CG13244 INTRON beat-Ib
3L	14248767	3L_14248767_SNP [dm3] 3L_14255667_SNP [dm6]	G	A	3.698e^-4	0.86	INTERGENIC
3L	16036583	3L_16036583_SNP [dm3] 3L_16043483_SNP [dm6]	A	G	3.703e^-4	0.86	UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	7170683	3L_7170683_SNP [dm3] 3L_7177583_SNP [dm6]	A	G	3.704e^-4	0.86	INTRON Dscam2
3R	22794199	3R_22794199_SNP [dm3] 3R_26968477_SNP [dm6]	A	G	3.708e^-4	0.86	INTRON CG5521
3L	1344895	3L_1344895_SNP [dm3] 3L_1344895_SNP [dm6]	G	A	3.710e^-4	0.86	SYNONYMOUS_CODING Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1572479	3L_1572479_SNP [dm3] 3L_1572479_SNP [dm6]	A	G	3.711e^-4	0.86	INTRON CG12004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	19841437	2L_19841437_SNP [dm3] 2L_19841437_SNP [dm6]	G	A	3.719e^-4	0.86	INTRON sick
3L	10626331	3L_10626331_SNP [dm3] 3L_10633231_SNP [dm6]	G	T	3.723e^-4	0.86	SYNONYMOUS_CODING hay INTRON CG34001
2R	17678420	2R_17678420_SNP [dm3] 2R_21790915_SNP [dm6]	A	G	3.739e^-4	0.86	SYNONYMOUS_CODING lox2
3L	3307568	3L_3307568_SNP [dm3] 3L_3307568_SNP [dm6]	T	A	3.741e^-4	0.86	UPSTREAM ZnT63C INTRON ZnT63C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17423881	2R_17423881_SNP [dm3] 2R_21536376_SNP [dm6]	T	C	3.744e^-4	0.86	NON_SYNONYMOUS_CODING CG30286 DOWNSTREAM CG30287 INTRON Egfr	TF binding site mE1_TFBS_sens
2R	14572926	2R_14572926_SNP [dm3] 2R_18685421_SNP [dm6]	T	C	3.754e^-4	0.86	NON_SYNONYMOUS_CODING CG44433	TF binding site mE1_TFBS_sens
3L	22477056	3L_22477056_SNP [dm3] 3L_22483956_SNP [dm6]	G	T	3.759e^-4	0.86	INTERGENIC
3L	21407912	3L_21407912_SNP [dm3] 3L_21414812_SNP [dm6]	T	C	3.761e^-4	0.86	INTRON rgn
X	12020259	X_12020259_SNP [dm3] X_12126226_SNP [dm6]	G	T	3.768e^-4	0.86	INTRON Ten-a
2R	18671725	2R_18671725_SNP [dm3] 2R_22784220_SNP [dm6]	G	T	3.771e^-4	0.86	UPSTREAM CG30270 INTRON CG42260
2L	7707897	2L_7707897_SNP [dm3] 2L_7707897_SNP [dm6]	C	T	3.774e^-4	0.86	NON_SYNONYMOUS_CODING Tep3 DOWNSTREAM CR44990
2L	588350	2L_588350_SNP [dm3] 2L_588350_SNP [dm6]	A	G	3.781e^-4	0.86	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15697846	2R_15697846_SNP [dm3] 2R_19810341_SNP [dm6]	A	T	3.782e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	8001537	3R_8001537_SNP [dm3] 3R_12175815_SNP [dm6]	A	G	3.782e^-4	0.86	INTERGENIC
3L	4442968	3L_4442968_SNP [dm3] 3L_4442968_SNP [dm6]	G	T	3.783e^-4	0.86	INTERGENIC
3R	17827239	3R_17827239_SNP [dm3] 3R_22001517_SNP [dm6]	G	T	3.791e^-4	0.86	INTRON Eip93F	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
X	20944231	X_20944231_SNP [dm3] X_21073204_SNP [dm6]	A	G	3.794e^-4	0.86	INTRON bves
3R	13006502	3R_13006502_DEL [dm3] 3R_17180780_DEL [dm6]	AATGTGTACACTCTTCTTGG...	A	3.797e^-4	0.86	INTRON Mur89F
2R	14572832	2R_14572832_SNP [dm3] 2R_18685327_SNP [dm6]	C	T	3.804e^-4	0.86	SYNONYMOUS_CODING CG44433	TF binding site mE1_TFBS_sens
3L	4733848	3L_4733848_SNP [dm3] 3L_4733848_SNP [dm6]	G	A	3.809e^-4	0.86	INTRON RhoGEF64C
3R	21344966	3R_21344966_SNP [dm3] 3R_25519244_SNP [dm6]	C	G	3.811e^-4	0.86	INTRON msi
3R	7604889	3R_7604889_SNP [dm3] 3R_11779167_SNP [dm6]	T	C	3.816e^-4	0.86	UPSTREAM l_3_neo38 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk
3L	16036484	3L_16036484_SNP [dm3] 3L_16043384_SNP [dm6]	T	A	3.817e^-4	0.86	UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	14246967	2L_14246967_DEL [dm3] 2L_14246967_DEL [dm6]	AA	A	3.821e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17424414	2R_17424414_SNP [dm3] 2R_21536909_SNP [dm6]	G	T	3.822e^-4	0.86	UTR_3_PRIME CG30287 UPSTREAM CG30286 INTRON Egfr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16890617	3R_16890617_SNP [dm3] 3R_21064895_SNP [dm6]	G	A	3.823e^-4	0.86	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3L	8324359	3L_8324359_SNP [dm3] 3L_8331259_SNP [dm6]	T	C	3.827e^-4	0.86	INTERGENIC
2R	2968695	2R_2968695_SNP [dm3] 2R_7081190_SNP [dm6]	A	C	3.832e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	2998253	3L_2998253_SNP [dm3] 3L_2998253_SNP [dm6]	A	G	3.837e^-4	0.86	INTERGENIC
3L	10759238	3L_10759238_DEL [dm3] 3L_10766138_DEL [dm6]	AATTA	A	3.839e^-4	0.86	INTERGENIC
X	6643090	X_6643090_INS [dm3] X_6749057_INS [dm6]	A	ACA	3.843e^-4	0.86	INTRON CG14439
2R	17940739	2R_17940739_SNP [dm3] 2R_22053234_SNP [dm6]	G	C	3.855e^-4	0.86	INTERGENIC
2R	19385165	2R_19385165_SNP [dm3] 2R_23497642_SNP [dm6]	T	A	3.869e^-4	0.86	INTERGENIC
2R	5068721	2R_5068721_SNP [dm3] 2R_9181216_SNP [dm6]	C	A	3.876e^-4	0.86	UTR_5_PRIME ltd UPSTREAM ltd INTRON ltd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	2262211	2L_2262211_INS [dm3] 2L_2262211_INS [dm6]	C	CGCCCAACC	3.879e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15664748	3L_15664748_SNP [dm3] 3L_15671648_SNP [dm6]	A	G	3.882e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	12249089	2L_12249089_SNP [dm3] 2L_12249089_SNP [dm6]	A	C	3.895e^-4	0.86	INTRON aret
3L	2100556	3L_2100556_SNP [dm3] 3L_2100556_SNP [dm6]	T	G	3.902e^-4	0.86	INTRON sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2100557	3L_2100557_SNP [dm3] 3L_2100557_SNP [dm6]	T	C	3.902e^-4	0.86	SPLICE_SITE_REGION sls INTRON sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8047588	2L_8047588_SNP [dm3] 2L_8047588_SNP [dm6]	T	C	3.904e^-4	0.86	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9096947	X_9096947_SNP [dm3] X_9202914_SNP [dm6]	G	A	3.908e^-4	0.86	INTERGENIC
2R	8840194	2R_8840194_SNP [dm3] 2R_12952689_SNP [dm6]	G	A	3.914e^-4	0.86	UPSTREAM CG13321 & 2 others INTERGENIC
3L	14563239	3L_14563239_SNP [dm3] 3L_14570139_SNP [dm6]	G	C	3.918e^-4	0.86	INTERGENIC
3L	2375447	3L_2375447_SNP [dm3] 3L_2375447_SNP [dm6]	G	T	3.918e^-4	0.86	SYNONYMOUS_CODING CG9004	TF binding site mE1_TFBS_sens
3L	4076717	3L_4076717_SNP [dm3] 3L_4076717_SNP [dm6]	A	G	3.919e^-4	0.86	INTRON Gad1
2L	21917588	2L_21917588_SNP [dm3] 2L_21917588_SNP [dm6]	C	A	3.924e^-4	0.86	DOWNSTREAM CG11634 INTRON CG11634
X	18253456	X_18253456_SNP [dm3] X_18359423_SNP [dm6]	G	A	3.942e^-4	0.86	NON_SYNONYMOUS_CODING CG6106
3L	5862768	3L_5862768_SNP [dm3] 3L_5869668_SNP [dm6]	T	C	3.943e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	11621955	3L_11621955_DEL [dm3] 3L_11628855_DEL [dm6]	ATTA	G	3.946e^-4	0.86	UPSTREAM mir-3642 INTRON CG18815
3L	11621966	3L_11621966_DEL [dm3] 3L_11628866_DEL [dm6]	GCAAACAAAACTTACCT...	G	3.946e^-4	0.86	UPSTREAM mir-3642 INTRON CG18815
2L	16404604	2L_16404604_SNP [dm3] 2L_16404604_SNP [dm6]	A	G	3.954e^-4	0.86	SYNONYMOUS_CODING CG5888
2R	12280825	2R_12280825_SNP [dm3] 2R_16393320_SNP [dm6]	G	T	3.955e^-4	0.86	INTRON Sema-2b
X	18440877	X_18440877_DEL [dm3] X_18546844_DEL [dm6]	TT	T	3.963e^-4	0.86	INTRON Bx
2L	3267680	2L_3267680_SNP [dm3] 2L_3267680_SNP [dm6]	G	A	3.964e^-4	0.86	UPSTREAM CR44484 INTERGENIC
2L	5480683	2L_5480683_SNP [dm3] 2L_5480683_SNP [dm6]	A	C	3.970e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_cad
2L	14957517	2L_14957517_SNP [dm3] 2L_14957517_SNP [dm6]	C	A	3.971e^-4	0.86	INTRON CG42313
X	16795164	X_16795164_SNP [dm3] X_16901131_SNP [dm6]	G	A	3.982e^-4	0.86	DOWNSTREAM CR44754 INTERGENIC
2R	5062032	2R_5062032_SNP [dm3] 2R_9174527_SNP [dm6]	A	G	3.985e^-4	0.86	SYNONYMOUS_CODING Rme-8
3L	1912355	3L_1912355_SNP [dm3] 3L_1912355_SNP [dm6]	A	C	3.987e^-4	0.86	INTERGENIC
2L	8742920	2L_8742920_SNP [dm3] 2L_8742920_SNP [dm6]	T	A	3.996e^-4	0.86	INTERGENIC
X	5853505	X_5853505_SNP [dm3] X_5959472_SNP [dm6]	G	A	4.002e^-4	0.86	SYNONYMOUS_CODING fs_1_M3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7863527	3L_7863527_SNP [dm3] 3L_7870427_SNP [dm6]	C	A	4.009e^-4	0.86	INTRON CG32365
3L	9040814	3L_9040814_SNP [dm3] 3L_9047714_SNP [dm6]	C	A	4.012e^-4	0.86	SYNONYMOUS_CODING CG5144	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sens
2L	1312836	2L_1312836_SNP [dm3] 2L_1312836_SNP [dm6]	G	A	4.012e^-4	0.86	INTERGENIC
2R	14671861	2R_14671861_SNP [dm3] 2R_18784356_SNP [dm6]	T	A	4.018e^-4	0.86	INTRON CG15080	enhancer mE1_CBP_Enhancers
2L	14957232	2L_14957232_SNP [dm3] 2L_14957232_SNP [dm6]	C	T	4.025e^-4	0.86	INTRON CG42313
2L	8370140	2L_8370140_SNP [dm3] 2L_8370140_SNP [dm6]	C	T	4.031e^-4	0.86	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
3L	18648267	3L_18648267_INS [dm3] 3L_18655167_INS [dm6]	T	TT	4.034e^-4	0.86	INTRON MYPT-75D
2L	4106375	2L_4106375_SNP [dm3] 2L_4106375_SNP [dm6]	A	C	4.038e^-4	0.86	INTRON ed
2L	4106377	2L_4106377_SNP [dm3] 2L_4106377_SNP [dm6]	T	A	4.038e^-4	0.86	INTRON ed
2L	4028694	2L_4028694_SNP [dm3] 2L_4028694_SNP [dm6]	A	C	4.040e^-4	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	16531687	3L_16531687_DEL [dm3] 3L_16538587_DEL [dm6]	TT	T	4.044e^-4	0.86	INTRON CG43373
2R	16580622	2R_16580622_SNP [dm3] 2R_20693117_SNP [dm6]	G	T	4.048e^-4	0.86	SYNONYMOUS_CODING CG13438 DOWNSTREAM CR44659
3R	9679823	3R_9679823_SNP [dm3] 3R_13854101_SNP [dm6]	C	T	4.051e^-4	0.86	DOWNSTREAM CG14362 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	9679835	3R_9679835_SNP [dm3] 3R_13854113_SNP [dm6]	G	A	4.051e^-4	0.86	DOWNSTREAM CG14362 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	18361735	3L_18361735_SNP [dm3] 3L_18368635_SNP [dm6]	A	T	4.052e^-4	0.86	INTERGENIC
2R	12398479	2R_12398479_SNP [dm3] 2R_16510974_SNP [dm6]	C	T	4.058e^-4	0.861	INTRON Sema-2a
2R	9099645	2R_9099645_SNP [dm3] 2R_13212140_SNP [dm6]	C	T	4.064e^-4	0.861	SYNONYMOUS_CODING CG34235 UTR_5_PRIME CG30058 & 1 other UPSTREAM CG30058 & 1 other DOWNSTREAM AQP
3R	10316446	3R_10316446_SNP [dm3] 3R_14490724_SNP [dm6]	A	T	4.086e^-4	0.862	INTERGENIC
2R	14074076	2R_14074076_SNP [dm3] 2R_18186571_SNP [dm6]	C	A	4.095e^-4	0.862	INTRON CG33958
2L	18932869	2L_18932869_INS [dm3] 2L_18932869_INS [dm6]	T	TT	4.099e^-4	0.862	INTRON ssp3
3L	4442972	3L_4442972_SNP [dm3] 3L_4442972_SNP [dm6]	C	T	4.099e^-4	0.862	INTERGENIC
3R	4130932	3R_4130932_SNP [dm3] 3R_8305210_SNP [dm6]	T	A	4.100e^-4	0.862	UTR_5_PRIME Sgt1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	16862397	2R_16862397_SNP [dm3] 2R_20974892_SNP [dm6]	T	C	4.104e^-4	0.862	UPSTREAM CG15649 & 1 other INTERGENIC
X	4557427	X_4557427_SNP [dm3] X_4663394_SNP [dm6]	G	A	4.106e^-4	0.862	INTRON CG3009
3R	4338773	3R_4338773_SNP [dm3] 3R_8513051_SNP [dm6]	G	T	4.107e^-4	0.862	UPSTREAM Or85c INTERGENIC
3L	7705207	3L_7705207_SNP [dm3] 3L_7712107_SNP [dm6]	G	T	4.128e^-4	0.866	INTRON CG32373 & 1 other
X	12243486	X_12243486_SNP [dm3] X_12349453_SNP [dm6]	C	T	4.162e^-4	0.866	INTERGENIC
2L	17434753	2L_17434753_SNP [dm3] 2L_17434753_SNP [dm6]	C	A	4.164e^-4	0.866	INTRON CG5043
3L	19644765	3L_19644765_SNP [dm3] 3L_19651665_SNP [dm6]	G	A	4.166e^-4	0.866	NON_SYNONYMOUS_CODING tey	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20873525	2R_20873525_SNP [dm3] 2R_24986002_SNP [dm6]	A	G	4.168e^-4	0.866	UTR_5_PRIME emp UPSTREAM CG3829	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14073611	2R_14073611_SNP [dm3] 2R_18186106_SNP [dm6]	G	A	4.169e^-4	0.866	SYNONYMOUS_CODING CG33958
2R	17332631	2R_17332631_SNP [dm3] 2R_21445126_SNP [dm6]	A	G	4.170e^-4	0.866	INTRON Sdc
3L	9596117	3L_9596117_INS [dm3] 3L_9603017_INS [dm6]	A	AA	4.171e^-4	0.866	UPSTREAM CG3280 DOWNSTREAM CG3306 INTERGENIC
3R	11246750	3R_11246750_SNP [dm3] 3R_15421028_SNP [dm6]	T	A	4.173e^-4	0.866	DOWNSTREAM CG6118 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
3L	17672022	3L_17672022_SNP [dm3] 3L_17678922_SNP [dm6]	C	A	4.174e^-4	0.866	INTRON CG34251
3L	12400114	3L_12400114_DEL [dm3] 3L_12407014_DEL [dm6]	AGTA	A	4.177e^-4	0.866	INTRON CG32103	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	14555445	3L_14555445_SNP [dm3] 3L_14562345_SNP [dm6]	A	T	4.185e^-4	0.867	INTRON CG34039	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
2R	6657355	2R_6657355_SNP [dm3] 2R_10769850_SNP [dm6]	A	G	4.210e^-4	0.869	INTRON CG33144
3R	26444986	3R_26444986_SNP [dm3] 3R_30619264_SNP [dm6]	G	A	4.217e^-4	0.869	START_GAINED CG44954 UTR_5_PRIME CG44954
3L	1329105	3L_1329105_SNP [dm3] 3L_1329105_SNP [dm6]	G	A	4.217e^-4	0.869	SYNONYMOUS_CODING Myo61F UPSTREAM mtacp1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	9096974	X_9096974_SNP [dm3] X_9202941_SNP [dm6]	A	T	4.226e^-4	0.869	INTERGENIC
2R	16635276	2R_16635276_SNP [dm3] 2R_20747771_SNP [dm6]	C	T	4.232e^-4	0.869	INTRON dpr
3R	6049011	3R_6049011_SNP [dm3] 3R_10223289_SNP [dm6]	T	C	4.239e^-4	0.869	SYNONYMOUS_CODING CG12420 DOWNSTREAM CG12817 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14843656	X_14843656_SNP [dm3] X_14949623_SNP [dm6]	A	T	4.242e^-4	0.869	INTRON pdgy
3L	22480343	3L_22480343_SNP [dm3] 3L_22487243_SNP [dm6]	C	T	4.246e^-4	0.869	INTERGENIC
2L	588175	2L_588175_SNP [dm3] 2L_588175_SNP [dm6]	A	C	4.254e^-4	0.869	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18396796	3L_18396796_SNP [dm3] 3L_18403696_SNP [dm6]	A	G	4.254e^-4	0.869	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
3L	8151520	3L_8151520_SNP [dm3] 3L_8158420_SNP [dm6]	A	G	4.263e^-4	0.869	DOWNSTREAM CG43886 INTRON CG42445
2L	14744009	2L_14744009_SNP [dm3] 2L_14744009_SNP [dm6]	G	T	4.264e^-4	0.869	UPSTREAM CG42681 DOWNSTREAM CG34166 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
3L	9514624	3L_9514624_SNP [dm3] 3L_9521524_SNP [dm6]	A	G	4.266e^-4	0.869	INTRON CG33700
2L	9067065	2L_9067065_SNP [dm3] 2L_9067065_SNP [dm6]	C	A	4.276e^-4	0.869	INTRON CG31708
2R	14074046	2R_14074046_SNP [dm3] 2R_18186541_SNP [dm6]	T	C	4.289e^-4	0.869	SYNONYMOUS_CODING CG33958
3L	4245845	3L_4245845_SNP [dm3] 3L_4245845_SNP [dm6]	G	T	4.290e^-4	0.869	UTR_3_PRIME pav DOWNSTREAM ago
2L	1646762	2L_1646762_SNP [dm3] 2L_1646762_SNP [dm6]	T	G	4.290e^-4	0.869	DOWNSTREAM CR45695 INTERGENIC
3R	8599792	3R_8599792_SNP [dm3] 3R_12774070_SNP [dm6]	A	G	4.298e^-4	0.869	INTRON beat-Vc
2L	12797196	2L_12797196_SNP [dm3] 2L_12797196_SNP [dm6]	C	T	4.310e^-4	0.869	INTERGENIC
3L	13977150	3L_13977150_SNP [dm3] 3L_13984050_SNP [dm6]	T	C	4.315e^-4	0.869	INTRON CG17364	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	15557665	2L_15557665_SNP [dm3] 2L_15557665_SNP [dm6]	C	T	4.315e^-4	0.869	INTRON kek3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9182022	X_9182022_SNP [dm3] X_9287989_SNP [dm6]	T	C	4.330e^-4	0.869	INTRON lz
2R	11532519	2R_11532519_DEL [dm3] 2R_15645014_DEL [dm6]	GACAGAGCGTCCT...	G	4.331e^-4	0.869	INTRON CG42524	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sbb
2L	15469667	2L_15469667_SNP [dm3] 2L_15469667_SNP [dm6]	T	G	4.334e^-4	0.869	UPSTREAM CR45353 INTERGENIC
3L	14740746	3L_14740746_SNP [dm3] 3L_14747646_SNP [dm6]	C	T	4.334e^-4	0.869	UTR_3_PRIME ome DOWNSTREAM Trl & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11476238	2L_11476238_SNP [dm3] 2L_11476238_SNP [dm6]	C	T	4.341e^-4	0.869	INTERGENIC
2R	12476923	2R_12476923_SNP [dm3] 2R_16589418_SNP [dm6]	A	C	4.345e^-4	0.869	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	4537403	3L_4537403_SNP [dm3] 3L_4537403_SNP [dm6]	T	A	4.350e^-4	0.869	NON_SYNONYMOUS_CODING CG11353
X	14841922	X_14841922_SNP [dm3] X_14947889_SNP [dm6]	G	A	4.352e^-4	0.869	INTRON pdgy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4922177	2R_4922177_SNP [dm3] 2R_9034672_SNP [dm6]	A	G	4.353e^-4	0.869	INTERGENIC
X	9096514	X_9096514_SNP [dm3] X_9202481_SNP [dm6]	T	C	4.376e^-4	0.869	UPSTREAM su_r_ INTERGENIC
3R	12930328	3R_12930328_SNP [dm3] 3R_17104606_SNP [dm6]	T	C	4.384e^-4	0.869	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	744396	X_744396_SNP [dm3] X_850363_SNP [dm6]	A	G	4.390e^-4	0.869	INTRON CG43867
3L	2393649	3L_2393649_SNP [dm3] 3L_2393649_SNP [dm6]	G	C	4.411e^-4	0.869	INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20114987	X_20114987_SNP [dm3] X_20243913_SNP [dm6]	A	T	4.417e^-4	0.869	UPSTREAM Peritrophin-A DOWNSTREAM obst-A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	8366292	2R_8366292_SNP [dm3] 2R_12478787_SNP [dm6]	C	T	4.418e^-4	0.869	INTRON Dh44-R2
2L	11895792	2L_11895792_SNP [dm3] 2L_11895792_SNP [dm6]	T	C	4.423e^-4	0.869	INTRON Pde1c
2L	7079990	2L_7079990_SNP [dm3] 2L_7079990_SNP [dm6]	C	T	4.426e^-4	0.869	UPSTREAM CR44611 INTRON Pvf2
2L	1864281	2L_1864281_SNP [dm3] 2L_1864281_SNP [dm6]	C	T	4.440e^-4	0.869	INTRON CG31663
3L	9513334	3L_9513334_SNP [dm3] 3L_9520234_SNP [dm6]	A	G	4.441e^-4	0.869	INTRON CG33700
3L	10017389	3L_10017389_SNP [dm3] 3L_10024289_SNP [dm6]	C	A	4.441e^-4	0.869	INTRON dpr6
X	3561381	X_3561381_SNP [dm3] X_3667348_SNP [dm6]	A	T	4.443e^-4	0.869	UPSTREAM Ilp7 DOWNSTREAM AstA-R1 INTERGENIC
2L	10577696	2L_10577696_SNP [dm3] 2L_10577696_SNP [dm6]	T	C	4.453e^-4	0.869	NON_SYNONYMOUS_CODING w-cup INTRON Trim9
2R	20624719	2R_20624719_DEL [dm3] 2R_24737196_DEL [dm6]	CCCGCCAGCTTAGCCAAAGT...	GGC	4.466e^-4	0.869	UPSTREAM Mid1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7586861	2R_7586861_SNP [dm3] 2R_11699356_SNP [dm6]	G	T	4.467e^-4	0.869	EXON Ir48a
3R	24175536	3R_24175536_INS [dm3] 3R_28349814_INS [dm6]	G	GG	4.478e^-4	0.869	INTERGENIC
2L	11049534	2L_11049534_SNP [dm3] 2L_11049534_SNP [dm6]	T	C	4.479e^-4	0.869	INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	7625848	X_7625848_INS [dm3] X_7731815_INS [dm6]	G	GGTC	4.509e^-4	0.869	UTR_3_PRIME Pdp DOWNSTREAM CG12155
2L	21795846	2L_21795846_SNP [dm3] 2L_21795846_SNP [dm6]	A	T	4.511e^-4	0.869	UPSTREAM CG31612 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
2L	21795848	2L_21795848_SNP [dm3] 2L_21795848_SNP [dm6]	A	C	4.511e^-4	0.869	UPSTREAM CG31612 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
2L	21795849	2L_21795849_SNP [dm3] 2L_21795849_SNP [dm6]	G	C	4.511e^-4	0.869	UPSTREAM CG31612 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
3L	7704978	3L_7704978_DEL [dm3] 3L_7711878_DEL [dm6]	TGTGAAGGATATACACAAGC...	G	4.519e^-4	0.869	INTRON CG32373 & 1 other
3L	7704938	3L_7704938_SNP [dm3] 3L_7711838_SNP [dm6]	T	A	4.527e^-4	0.869	INTRON CG32373 & 1 other
2L	1646216	2L_1646216_SNP [dm3] 2L_1646216_SNP [dm6]	G	A	4.527e^-4	0.869	DOWNSTREAM CR45695 INTERGENIC
3L	1584266	3L_1584266_SNP [dm3] 3L_1584266_SNP [dm6]	G	C	4.529e^-4	0.869	INTRON CG13917	TF binding site mE1_TFBS_HSA
2R	15963488	2R_15963488_SNP [dm3] 2R_20075983_SNP [dm6]	G	A	4.531e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7975710	3L_7975710_SNP [dm3] 3L_7982610_SNP [dm6]	G	A	4.541e^-4	0.869	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4944154	3R_4944154_SNP [dm3] 3R_9118432_SNP [dm6]	C	G	4.541e^-4	0.869	INTRON pum
3R	7247954	3R_7247954_SNP [dm3] 3R_11422232_SNP [dm6]	G	A	4.576e^-4	0.869	UTR_5_PRIME CG5270 UPSTREAM ninaG	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	9074891	2R_9074891_SNP [dm3] 2R_13187386_SNP [dm6]	G	C	4.578e^-4	0.869	SPLICE_SITE_REGION Kdm4B & 1 other INTRON seq & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10179604	3R_10179604_SNP [dm3] 3R_14353882_SNP [dm6]	G	T	4.581e^-4	0.869	INTRON NK7.1
3R	24735972	3R_24735972_SNP [dm3] 3R_28910250_SNP [dm6]	C	G	4.586e^-4	0.869	NON_SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27127467	3R_27127467_SNP [dm3] 3R_31301745_SNP [dm6]	T	G	4.591e^-4	0.869	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_inv
3R	13801063	3R_13801063_DEL [dm3] 3R_17975341_DEL [dm6]	GGGTTGGATGAGCGTG...	G	4.596e^-4	0.869	INTRON cpo
3L	22489003	3L_22489003_SNP [dm3] 3L_22495903_SNP [dm6]	A	T	4.598e^-4	0.869	DOWNSTREAM CR45430 INTERGENIC
2L	12139133	2L_12139133_SNP [dm3] 2L_12139133_SNP [dm6]	C	A	4.599e^-4	0.869	SYNONYMOUS_CODING Gr33a
2R	17274896	2R_17274896_SNP [dm3] 2R_21387391_SNP [dm6]	C	G	4.601e^-4	0.869	SYNONYMOUS_CODING Acox57D-p	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7025296	2L_7025296_SNP [dm3] 2L_7025296_SNP [dm6]	C	A	4.606e^-4	0.869	NON_SYNONYMOUS_CODING CG31908	TF binding site mE1_TFBS_cad
X	10057813	X_10057813_SNP [dm3] X_10163780_SNP [dm6]	T	A	4.613e^-4	0.869	INTRON CR44894 & 1 other
3R	14178742	3R_14178742_SNP [dm3] 3R_18353020_SNP [dm6]	C	A	4.615e^-4	0.869	SYNONYMOUS_CODING CG15803	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5700327	3L_5700327_DEL [dm3] 3L_5707227_DEL [dm6]	CC	C	4.621e^-4	0.869	INTRON sif
X	15020081	X_15020081_SNP [dm3] X_15126048_SNP [dm6]	C	T	4.623e^-4	0.869	NON_SYNONYMOUS_CODING drd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10862396	2L_10862396_SNP [dm3] 2L_10862396_SNP [dm6]	T	C	4.626e^-4	0.869	DOWNSTREAM Stam EXON CR43807
2R	13513726	2R_13513726_SNP [dm3] 2R_17626221_SNP [dm6]	G	C	4.632e^-4	0.869	INTRON CG10936
3L	457026	3L_457026_SNP [dm3] 3L_457026_SNP [dm6]	A	G	4.634e^-4	0.869	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens
2L	1316505	2L_1316505_SNP [dm3] 2L_1316505_SNP [dm6]	A	T	4.635e^-4	0.869	INTERGENIC
X	20944836	X_20944836_SNP [dm3] X_21073809_SNP [dm6]	C	T	4.637e^-4	0.869	INTRON bves
2R	12276882	2R_12276882_MNP [dm3] 2R_16389377_MNP [dm6]	CATCCTAC	TGTGTTTG	4.658e^-4	0.869	INTRON Sema-2b
3L	18641580	3L_18641580_SNP [dm3] 3L_18648480_SNP [dm6]	G	A	4.658e^-4	0.869	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20956021	2L_20956021_SNP [dm3] 2L_20956021_SNP [dm6]	G	A	4.662e^-4	0.869	INTERGENIC
3L	19964194	3L_19964194_SNP [dm3] 3L_19971094_SNP [dm6]	A	C	4.667e^-4	0.869	NON_SYNONYMOUS_CODING Ac76E	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13452676	3R_13452676_INS [dm3] 3R_17626954_INS [dm6]	C	CAATC	4.683e^-4	0.869	UPSTREAM CG14325 DOWNSTREAM AttD INTERGENIC
2L	18982370	2L_18982370_SNP [dm3] 2L_18982370_SNP [dm6]	T	A	4.693e^-4	0.869	INTRON Swip-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17442791	3L_17442791_SNP [dm3] 3L_17449691_SNP [dm6]	G	C	4.709e^-4	0.869	SYNONYMOUS_CODING CG18265	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18671724	2R_18671724_SNP [dm3] 2R_22784219_SNP [dm6]	T	G	4.709e^-4	0.869	UPSTREAM CG30270 INTRON CG42260
X	17339606	X_17339606_DEL [dm3] X_17445573_DEL [dm6]	TT	T	4.710e^-4	0.869	DOWNSTREAM p-cup INTERGENIC
3L	17551493	3L_17551493_SNP [dm3] 3L_17558393_SNP [dm6]	C	G	4.710e^-4	0.869	UPSTREAM CycT DOWNSTREAM Eip74EF INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	4075888	2R_4075888_SNP [dm3] 2R_8188383_SNP [dm6]	C	G	4.711e^-4	0.869	INTRON LRP1
3R	15497068	3R_15497068_SNP [dm3] 3R_19671346_SNP [dm6]	A	G	4.711e^-4	0.869	UPSTREAM Naam DOWNSTREAM CG7432 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
3L	8885634	3L_8885634_SNP [dm3] 3L_8892534_SNP [dm6]	A	T	4.715e^-4	0.869	SYNONYMOUS_CODING Mcm7	TF binding site BDTNP1_TFBS_twi
3R	12930223	3R_12930223_SNP [dm3] 3R_17104501_SNP [dm6]	G	A	4.719e^-4	0.869	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	16177498	2R_16177498_SNP [dm3] 2R_20289993_SNP [dm6]	C	G	4.722e^-4	0.869	SYNONYMOUS_CODING CkIIbeta2 INTRON Cpr56F
3L	3756095	3L_3756095_SNP [dm3] 3L_3756095_SNP [dm6]	G	A	4.730e^-4	0.869	UPSTREAM ppk27 INTRON CG32264	TF binding site mE1_TFBS_Trl
3L	5650459	3L_5650459_SNP [dm3] 3L_5657359_SNP [dm6]	C	G	4.738e^-4	0.869	UTR_3_PRIME lin-28 UPSTREAM sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	11723136	2R_11723136_SNP [dm3] 2R_15835631_SNP [dm6]	T	G	4.752e^-4	0.869	UPSTREAM Poxn INTRON tun	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl

By genomic position
Variant impact
Gene name

Wing_L6_Vein_Length phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results