DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.697e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.007331
In_3R_Mo	0.043376

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	10.6046	0.005

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2016 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	3.502e^-6	0.919	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	413912	3L_413912_SNP [dm3] 3L_413912_SNP [dm6]	C	T	3.723e^-6	0.919	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	14555445	3L_14555445_SNP [dm3] 3L_14562345_SNP [dm6]	A	T	5.025e^-6	0.919	INTRON CG34039	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
3L	16896011	3L_16896011_SNP [dm3] 3L_16902911_SNP [dm6]	A	T	5.898e^-6	0.919	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo
2R	13506075	2R_13506075_SNP [dm3] 2R_17618570_SNP [dm6]	T	G	6.813e^-6	0.919	UPSTREAM CG44403 INTRON CG10936
2R	12116819	2R_12116819_SNP [dm3] 2R_16229314_SNP [dm6]	A	G	8.254e^-6	0.919	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19127148	2R_19127148_SNP [dm3] 2R_23239625_SNP [dm6]	T	G	9.161e^-6	0.919	INTERGENIC
3L	14929590	3L_14929590_SNP [dm3] 3L_14936490_SNP [dm6]	G	C	9.359e^-6	0.919	INTRON DCX-EMAP
3L	743993	3L_743993_SNP [dm3] 3L_743993_SNP [dm6]	T	C	1.054e^-5	0.919	UPSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10364938	3R_10364938_SNP [dm3] 3R_14539216_SNP [dm6]	G	T	1.090e^-5	0.919	INTRON Pde6
3L	15483312	3L_15483312_SNP [dm3] 3L_15490212_SNP [dm6]	A	G	1.592e^-5	0.919	INTERGENIC
3L	13553816	3L_13553816_DEL [dm3] 3L_13560716_DEL [dm6]	GTCGACGTAGCGACACT...	G	1.881e^-5	0.919	INTRON bru-3
2L	4144537	2L_4144537_SNP [dm3] 2L_4144537_SNP [dm6]	T	G	1.889e^-5	0.919	INTERGENIC
2L	18871861	2L_18871861_SNP [dm3] 2L_18871861_SNP [dm6]	G	A	1.902e^-5	0.919	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19522029	2L_19522029_SNP [dm3] 2L_19522029_SNP [dm6]	C	T	1.905e^-5	0.919	SYNONYMOUS_CODING CG10132	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6463898	2L_6463898_SNP [dm3] 2L_6463898_SNP [dm6]	A	T	1.927e^-5	0.919	UTR_5_PRIME CG16947	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	18871864	2L_18871864_SNP [dm3] 2L_18871864_SNP [dm6]	C	T	1.946e^-5	0.919	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20316757	2R_20316757_SNP [dm3] 2R_24429234_SNP [dm6]	A	G	2.030e^-5	0.919	UPSTREAM prom DOWNSTREAM CG15873 INTERGENIC
X	20262267	X_20262267_SNP [dm3] X_20391240_SNP [dm6]	A	G	2.033e^-5	0.919	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7721690	3L_7721690_SNP [dm3] 3L_7728590_SNP [dm6]	T	G	2.105e^-5	0.919	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
2R	17894354	2R_17894354_SNP [dm3] 2R_22006849_SNP [dm6]	A	G	2.157e^-5	0.919	INTRON CG34370
3L	15483333	3L_15483333_SNP [dm3] 3L_15490233_SNP [dm6]	T	C	2.159e^-5	0.919	INTERGENIC
3L	8391972	3L_8391972_SNP [dm3] 3L_8398872_SNP [dm6]	A	T	2.198e^-5	0.919	INTRON CG7120
2L	22020494	2L_22020494_SNP [dm3] 2L_22020494_SNP [dm6]	A	G	2.248e^-5	0.919	DOWNSTREAM CR33987 INTRON tio	TF binding site mE1_TFBS_Trl
2L	18871879	2L_18871879_SNP [dm3] 2L_18871879_SNP [dm6]	C	T	2.281e^-5	0.919	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10842862	3L_10842862_SNP [dm3] 3L_10849762_SNP [dm6]	T	C	2.312e^-5	0.919	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	7331866	3R_7331866_SNP [dm3] 3R_11506144_SNP [dm6]	C	T	2.440e^-5	0.919	DOWNSTREAM dpr5 INTERGENIC
2L	8986559	2L_8986559_SNP [dm3] 2L_8986559_SNP [dm6]	T	C	2.536e^-5	0.919	INTRON rost
2L	8986560	2L_8986560_SNP [dm3] 2L_8986560_SNP [dm6]	C	A	2.536e^-5	0.919	INTRON rost
3L	8391974	3L_8391974_SNP [dm3] 3L_8398874_SNP [dm6]	G	A	2.575e^-5	0.919	INTRON CG7120
3L	3143873	3L_3143873_SNP [dm3] 3L_3143873_SNP [dm6]	T	A	2.594e^-5	0.919	UTR_5_PRIME CG1291 UPSTREAM CG11537	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	20262270	X_20262270_INS [dm3] X_20391243_INS [dm6]	A	ATCAATAATAATTCAA...	2.759e^-5	0.919	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11573868	2R_11573868_SNP [dm3] 2R_15686363_SNP [dm6]	C	T	2.823e^-5	0.919	SYNONYMOUS_CODING Ranbp11 UPSTREAM CG30082	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3L	7721688	3L_7721688_SNP [dm3] 3L_7728588_SNP [dm6]	A	G	2.834e^-5	0.919	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
2L	10085825	2L_10085825_SNP [dm3] 2L_10085825_SNP [dm6]	C	T	2.928e^-5	0.919	INTRON CG44153
3L	7777439	3L_7777439_SNP [dm3] 3L_7784339_SNP [dm6]	C	T	2.935e^-5	0.919	INTRON CG32369
2R	16425872	2R_16425872_SNP [dm3] 2R_20538367_SNP [dm6]	T	C	3.021e^-5	0.919	DOWNSTREAM CG13427 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
3R	5121979	3R_5121979_SNP [dm3] 3R_9296257_SNP [dm6]	T	G	3.110e^-5	0.919	INTRON CG8861
3L	20821277	3L_20821277_SNP [dm3] 3L_20828177_SNP [dm6]	C	T	3.170e^-5	0.919	UTR_5_PRIME Pka-R1 UPSTREAM Pka-R1 INTRON Pka-R1
3L	16896018	3L_16896018_SNP [dm3] 3L_16902918_SNP [dm6]	G	A	3.291e^-5	0.919	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo
2L	22297776	2L_22297776_SNP [dm3] 2L_22297776_SNP [dm6]	G	A	3.359e^-5	0.919	INTERGENIC	transposable element FlyBase
3L	10756244	3L_10756244_SNP [dm3] 3L_10763144_SNP [dm6]	A	G	3.506e^-5	0.919	INTERGENIC
3L	5886015	3L_5886015_SNP [dm3] 3L_5892915_SNP [dm6]	C	G	3.631e^-5	0.919	INTERGENIC
2L	3126389	2L_3126389_SNP [dm3] 2L_3126389_SNP [dm6]	C	T	3.732e^-5	0.919	NON_SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	510296	2L_510296_SNP [dm3] 2L_510296_SNP [dm6]	C	G	3.834e^-5	0.919	INTRON ush	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	15411404	3L_15411404_SNP [dm3] 3L_15418304_SNP [dm6]	G	T	3.894e^-5	0.919	INTERGENIC
2R	10925619	2R_10925619_SNP [dm3] 2R_15038114_SNP [dm6]	A	G	4.076e^-5	0.919	INTRON hbs
3L	4152861	3L_4152861_SNP [dm3] 3L_4152861_SNP [dm6]	G	A	4.162e^-5	0.919	DOWNSTREAM CG1299 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13156683	2R_13156683_SNP [dm3] 2R_17269178_SNP [dm6]	T	C	4.234e^-5	0.919	INTRON mbl	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run
2R	8137681	2R_8137681_SNP [dm3] 2R_12250176_SNP [dm6]	A	C	4.235e^-5	0.919	INTERGENIC
2L	21802262	2L_21802262_SNP [dm3] 2L_21802262_SNP [dm6]	A	G	4.248e^-5	0.919	INTERGENIC
2L	7337340	2L_7337340_SNP [dm3] 2L_7337340_SNP [dm6]	G	T	4.462e^-5	0.919	INTRON Wnt6
X	21081580	X_21081580_SNP [dm3] X_21210553_SNP [dm6]	A	G	4.463e^-5	0.919	INTRON CG32521
2L	13696626	2L_13696626_SNP [dm3] 2L_13696626_SNP [dm6]	G	A	4.519e^-5	0.919	INTRON CG31814
3L	712423	3L_712423_SNP [dm3] 3L_712423_SNP [dm6]	G	C	4.568e^-5	0.919	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	12850971	X_12850971_SNP [dm3] X_12956938_SNP [dm6]	G	T	4.642e^-5	0.919	INTRON hec
3R	21876370	3R_21876370_SNP [dm3] 3R_26050648_SNP [dm6]	T	G	4.669e^-5	0.919	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20231634	3R_20231634_SNP [dm3] 3R_24405912_SNP [dm6]	G	A	4.714e^-5	0.919	INTRON nAChRalpha1
3L	742989	3L_742989_SNP [dm3] 3L_742989_SNP [dm6]	C	A	4.795e^-5	0.919	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	18872053	2L_18872053_SNP [dm3] 2L_18872053_SNP [dm6]	C	A	4.864e^-5	0.919	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20946369	2R_20946369_SNP [dm3] 2R_25058846_SNP [dm6]	C	T	4.868e^-5	0.919	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3L	3090995	3L_3090995_SNP [dm3] 3L_3090995_SNP [dm6]	C	T	4.873e^-5	0.919	UTR_3_PRIME Cht7 DOWNSTREAM CG11486 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	13415564	2R_13415564_SNP [dm3] 2R_17528059_SNP [dm6]	G	A	4.932e^-5	0.919	SYNONYMOUS_CODING Patronin
2R	8137710	2R_8137710_SNP [dm3] 2R_12250205_SNP [dm6]	C	A	4.970e^-5	0.919	INTERGENIC
3L	1903336	3L_1903336_SNP [dm3] 3L_1903336_SNP [dm6]	G	A	5.016e^-5	0.919	INTRON CG1887
2R	16868926	2R_16868926_SNP [dm3] 2R_20981421_SNP [dm6]	T	C	5.130e^-5	0.919	SYNONYMOUS_CODING CG9313	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11724772	2R_11724772_SNP [dm3] 2R_15837267_SNP [dm6]	C	T	5.200e^-5	0.919	INTRON tun	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	3439088	2L_3439088_SNP [dm3] 2L_3439088_SNP [dm6]	T	G	5.209e^-5	0.919	INTERGENIC
3L	457095	3L_457095_MNP [dm3] 3L_457095_MNP [dm6]	AATC	CTAT	5.235e^-5	0.919	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13925733	2L_13925733_SNP [dm3] 2L_13925733_SNP [dm6]	C	A	5.303e^-5	0.919	INTRON Ance-3
3R	20489476	3R_20489476_SNP [dm3] 3R_24663754_SNP [dm6]	G	T	5.433e^-5	0.919	INTRON slo	regulatory region REDfly_CRMs
3L	457066	3L_457066_DEL [dm3] 3L_457066_DEL [dm6]	AAACGTTCGACA...	A	5.495e^-5	0.919	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	457083	3L_457083_DEL [dm3] 3L_457083_DEL [dm6]	CCCTAGATT	C	5.495e^-5	0.919	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	461575	3L_461575_SNP [dm3] 3L_461575_SNP [dm6]	A	T	5.495e^-5	0.919	INTRON klar
3L	461577	3L_461577_SNP [dm3] 3L_461577_SNP [dm6]	T	A	5.495e^-5	0.919	INTRON klar
3L	461600	3L_461600_SNP [dm3] 3L_461600_SNP [dm6]	C	A	5.495e^-5	0.919	INTRON klar
3L	20187404	3L_20187404_SNP [dm3] 3L_20194304_SNP [dm6]	A	G	5.585e^-5	0.919	INTRON CG42674
2L	4143125	2L_4143125_DEL [dm3] 2L_4143125_DEL [dm6]	TAGATTGAATGTGAA...	T	5.688e^-5	0.919	INTERGENIC
3L	413923	3L_413923_SNP [dm3] 3L_413923_SNP [dm6]	A	G	5.708e^-5	0.919	INTERGENIC	TF binding site mE1_TFBS_Kr
X	14842540	X_14842540_SNP [dm3] X_14948507_SNP [dm6]	T	C	5.739e^-5	0.919	INTRON pdgy	TF binding site mE1_TFBS_HSA
2L	21802210	2L_21802210_SNP [dm3] 2L_21802210_SNP [dm6]	G	A	5.799e^-5	0.919	INTERGENIC
2R	10837352	2R_10837352_SNP [dm3] 2R_14949847_SNP [dm6]	A	G	5.816e^-5	0.919	UPSTREAM aPKC INTRON aPKC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	10691472	3L_10691472_SNP [dm3] 3L_10698372_SNP [dm6]	T	A	6.047e^-5	0.919	INTERGENIC
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	6.048e^-5	0.919	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	14813948	3L_14813948_SNP [dm3] 3L_14820848_SNP [dm6]	G	A	6.117e^-5	0.919	INTRON CG17839
3L	14561076	3L_14561076_SNP [dm3] 3L_14567976_SNP [dm6]	T	C	6.145e^-5	0.919	SYNONYMOUS_CODING CG42758
2L	376777	2L_376777_SNP [dm3] 2L_376777_SNP [dm6]	G	A	6.152e^-5	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	14389469	3L_14389469_SNP [dm3] 3L_14396369_SNP [dm6]	C	G	6.224e^-5	0.919	INTERGENIC
3R	3469607	3R_3469607_SNP [dm3] 3R_7643885_SNP [dm6]	C	T	6.234e^-5	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7045208	2R_7045208_SNP [dm3] 2R_11157703_SNP [dm6]	C	A	6.251e^-5	0.919	INTRON CG13229
2L	4424389	2L_4424389_SNP [dm3] 2L_4424389_SNP [dm6]	G	A	6.285e^-5	0.919	INTRON CG15431
3L	15411491	3L_15411491_SNP [dm3] 3L_15418391_SNP [dm6]	C	G	6.328e^-5	0.919	INTERGENIC
3R	10365362	3R_10365362_SNP [dm3] 3R_14539640_SNP [dm6]	G	A	6.351e^-5	0.919	INTRON Pde6
3L	1561196	3L_1561196_SNP [dm3] 3L_1561196_SNP [dm6]	G	T	6.366e^-5	0.919	NON_SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	20187373	3L_20187373_SNP [dm3] 3L_20194273_SNP [dm6]	G	T	6.374e^-5	0.919	INTRON CG42674
2L	18328109	2L_18328109_SNP [dm3] 2L_18328109_SNP [dm6]	C	G	6.454e^-5	0.919	INTRON Fas3
2R	8862122	2R_8862122_SNP [dm3] 2R_12974617_SNP [dm6]	G	A	6.504e^-5	0.919	INTRON Psc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4952040	2L_4952040_SNP [dm3] 2L_4952040_SNP [dm6]	T	C	6.508e^-5	0.919	DOWNSTREAM Jon25Bii INTERGENIC
2L	16759323	2L_16759323_SNP [dm3] 2L_16759323_SNP [dm6]	C	T	6.567e^-5	0.919	INTRON ppk17
3L	7719844	3L_7719844_SNP [dm3] 3L_7726744_SNP [dm6]	A	T	6.622e^-5	0.919	UPSTREAM CG7457 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10691485	3L_10691485_SNP [dm3] 3L_10698385_SNP [dm6]	T	G	6.673e^-5	0.919	INTERGENIC
3L	15234136	3L_15234136_SNP [dm3] 3L_15241036_SNP [dm6]	A	G	6.689e^-5	0.919	UTR_3_PRIME Tollo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	1109916	3L_1109916_SNP [dm3] 3L_1109916_SNP [dm6]	C	T	6.728e^-5	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
X	20262315	X_20262315_DEL [dm3] X_20391288_DEL [dm6]	TGATGTTTCTTAT...	T	6.875e^-5	0.919	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9536658	X_9536658_SNP [dm3] X_9642625_SNP [dm6]	T	A	7.068e^-5	0.919	INTRON l_1_G0232	TF binding site mE1_TFBS_inv
2L	7338333	2L_7338333_SNP [dm3] 2L_7338333_SNP [dm6]	G	T	7.069e^-5	0.919	INTRON Wnt6
2R	12116981	2R_12116981_SNP [dm3] 2R_16229476_SNP [dm6]	C	T	7.073e^-5	0.919	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13415561	2R_13415561_SNP [dm3] 2R_17528056_SNP [dm6]	A	G	7.101e^-5	0.919	SYNONYMOUS_CODING Patronin
3L	15483419	3L_15483419_SNP [dm3] 3L_15490319_SNP [dm6]	T	A	7.111e^-5	0.919	INTERGENIC
2L	4144530	2L_4144530_SNP [dm3] 2L_4144530_SNP [dm6]	G	A	7.119e^-5	0.919	INTERGENIC
X	9536672	X_9536672_SNP [dm3] X_9642639_SNP [dm6]	G	T	7.224e^-5	0.919	INTRON l_1_G0232	TF binding site mE1_TFBS_inv
3L	7721263	3L_7721263_SNP [dm3] 3L_7728163_SNP [dm6]	T	C	7.312e^-5	0.919	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8447278	2L_8447278_SNP [dm3] 2L_8447278_SNP [dm6]	T	G	7.314e^-5	0.919	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	6316406	3L_6316406_SNP [dm3] 3L_6323306_SNP [dm6]	C	T	7.340e^-5	0.919	INTERGENIC
X	10443026	X_10443026_SNP [dm3] X_10548993_SNP [dm6]	C	T	7.542e^-5	0.919	INTRON spri
3L	11843592	3L_11843592_DEL [dm3] 3L_11850492_DEL [dm6]	TT	T	7.652e^-5	0.919	DOWNSTREAM CG44837 INTERGENIC
2R	11567861	2R_11567861_SNP [dm3] 2R_15680356_SNP [dm6]	C	A	7.995e^-5	0.919	UPSTREAM CG30091 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	2933663	X_2933663_SNP [dm3] X_3039630_SNP [dm6]	C	T	8.014e^-5	0.919	INTRON kirre
3R	20231859	3R_20231859_SNP [dm3] 3R_24406137_SNP [dm6]	A	C	8.045e^-5	0.919	INTRON nAChRalpha1
3L	12147115	3L_12147115_SNP [dm3] 3L_12154015_SNP [dm6]	T	C	8.064e^-5	0.919	SYNONYMOUS_CODING Nrx-IV
2R	16861770	2R_16861770_SNP [dm3] 2R_20974265_SNP [dm6]	T	A	8.076e^-5	0.919	UPSTREAM CG15649 INTERGENIC
2L	6791732	2L_6791732_SNP [dm3] 2L_6791732_SNP [dm6]	G	T	8.240e^-5	0.919	SYNONYMOUS_CODING nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16196724	3R_16196724_SNP [dm3] 3R_20371002_SNP [dm6]	C	G	8.274e^-5	0.919	INTERGENIC
2R	13397292	2R_13397292_SNP [dm3] 2R_17509787_SNP [dm6]	A	C	8.274e^-5	0.919	UTR_5_PRIME CG34193 UPSTREAM CG34193
2L	2735393	2L_2735393_SNP [dm3] 2L_2735393_SNP [dm6]	C	A	8.298e^-5	0.919	UPSTREAM CG31689 INTRON CG31689
2L	8447265	2L_8447265_SNP [dm3] 2L_8447265_SNP [dm6]	A	G	8.377e^-5	0.919	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	8582618	3L_8582618_SNP [dm3] 3L_8589518_SNP [dm6]	T	C	8.387e^-5	0.919	UPSTREAM CG43078 INTRON CG43078
2L	19960413	2L_19960413_SNP [dm3] 2L_19960413_SNP [dm6]	C	T	8.446e^-5	0.919	SYNONYMOUS_CODING CG34051 DOWNSTREAM CoIV & 1 other	TF binding site mE1_TFBS_sens
3R	21295554	3R_21295554_SNP [dm3] 3R_25469832_SNP [dm6]	T	G	8.457e^-5	0.919	INTRON Fur1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	18487687	2L_18487687_SNP [dm3] 2L_18487687_SNP [dm6]	A	T	8.470e^-5	0.919	UTR_3_PRIME CG10176 DOWNSTREAM kon	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
2R	4269378	2R_4269378_SNP [dm3] 2R_8381873_SNP [dm6]	T	C	8.613e^-5	0.919	INTRON pdm3
X	6736540	X_6736540_SNP [dm3] X_6842507_SNP [dm6]	C	T	8.690e^-5	0.919	INTRON CG14435	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14182626	X_14182626_SNP [dm3] X_14288593_SNP [dm6]	G	A	8.755e^-5	0.919	DOWNSTREAM Muc12Ea INTRON CG9400
3R	25089055	3R_25089055_SNP [dm3] 3R_29263333_SNP [dm6]	A	G	8.860e^-5	0.919	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	6398352	2L_6398352_SNP [dm3] 2L_6398352_SNP [dm6]	G	T	8.877e^-5	0.919	INTRON CG42368
2L	9463855	2L_9463855_SNP [dm3] 2L_9463855_SNP [dm6]	C	T	9.122e^-5	0.919	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_kn
3R	10364635	3R_10364635_SNP [dm3] 3R_14538913_SNP [dm6]	A	G	9.125e^-5	0.919	INTRON Pde6
3R	10306571	3R_10306571_SNP [dm3] 3R_14480849_SNP [dm6]	T	G	9.148e^-5	0.919	UTR_5_PRIME cv-c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	14560642	3L_14560642_SNP [dm3] 3L_14567542_SNP [dm6]	C	A	9.331e^-5	0.919	INTRON CG42758
3L	4840793	3L_4840793_SNP [dm3] 3L_4840793_SNP [dm6]	T	G	9.346e^-5	0.919	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	9.395e^-5	0.919	INTRON dnc
X	8156894	X_8156894_INS [dm3] X_8262861_INS [dm6]	T	TTCCACGCTCCGAACCAAAT...	9.492e^-5	0.919	INTRON CG1632	TF binding site BDTNP1_TFBS_da
2L	19941325	2L_19941325_SNP [dm3] 2L_19941325_SNP [dm6]	C	T	9.506e^-5	0.919	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3L	17442081	3L_17442081_SNP [dm3] 3L_17448981_SNP [dm6]	C	T	9.521e^-5	0.919	INTRON CG18265
3R	15767069	3R_15767069_SNP [dm3] 3R_19941347_SNP [dm6]	G	A	9.554e^-5	0.919	INTRON Hs6st
3R	11982389	3R_11982389_DEL [dm3] 3R_16156667_DEL [dm6]	GATGAATG	G	9.692e^-5	0.919	INTRON CG6006
3L	743033	3L_743033_SNP [dm3] 3L_743033_SNP [dm6]	C	T	9.835e^-5	0.919	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	10084877	2L_10084877_SNP [dm3] 2L_10084877_SNP [dm6]	G	C	9.839e^-5	0.919	INTRON CG44153
2L	4364449	2L_4364449_SNP [dm3] 2L_4364449_SNP [dm6]	T	A	9.898e^-5	0.919	UPSTREAM CR45363 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10264888	3L_10264888_SNP [dm3] 3L_10271788_SNP [dm6]	C	A	9.901e^-5	0.919	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2841430	3R_2841430_SNP [dm3] 3R_7015708_SNP [dm6]	T	G	9.926e^-5	0.919	INTERGENIC
X	5452736	X_5452736_SNP [dm3] X_5558703_SNP [dm6]	C	T	1.001e^-4	0.919	INTRON Vsx2
2L	8167858	2L_8167858_SNP [dm3] 2L_8167858_SNP [dm6]	G	C	1.047e^-4	0.919	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14637789	2L_14637789_SNP [dm3] 2L_14637789_SNP [dm6]	G	A	1.048e^-4	0.919	INTRON osp
3L	712399	3L_712399_SNP [dm3] 3L_712399_SNP [dm6]	A	T	1.051e^-4	0.919	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	15236814	3L_15236814_SNP [dm3] 3L_15243714_SNP [dm6]	G	T	1.053e^-4	0.919	DOWNSTREAM Tollo INTERGENIC
2L	19970109	2L_19970109_SNP [dm3] 2L_19970109_SNP [dm6]	C	T	1.062e^-4	0.919	SYNONYMOUS_CODING CG43861 UTR_3_PRIME CG43861	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20262202	X_20262202_SNP [dm3] X_20391175_SNP [dm6]	C	A	1.079e^-4	0.919	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4545922	3L_4545922_SNP [dm3] 3L_4545922_SNP [dm6]	G	A	1.089e^-4	0.919	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	15413677	X_15413677_SNP [dm3] X_15519644_SNP [dm6]	C	G	1.090e^-4	0.919	INTRON Ac13E
3R	13600672	3R_13600672_SNP [dm3] 3R_17774950_SNP [dm6]	C	T	1.096e^-4	0.919	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	457111	3L_457111_SNP [dm3] 3L_457111_SNP [dm6]	T	A	1.110e^-4	0.919	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	9536660	X_9536660_SNP [dm3] X_9642627_SNP [dm6]	T	A	1.119e^-4	0.919	INTRON l_1_G0232	TF binding site mE1_TFBS_inv
3R	20509028	3R_20509028_SNP [dm3] 3R_24683306_SNP [dm6]	T	A	1.122e^-4	0.919	INTRON slo
3R	13139524	3R_13139524_SNP [dm3] 3R_17313802_SNP [dm6]	G	T	1.126e^-4	0.919	INTERGENIC
X	18314774	X_18314774_SNP [dm3] X_18420741_SNP [dm6]	C	T	1.133e^-4	0.919	INTERGENIC
2L	20860404	2L_20860404_SNP [dm3] 2L_20860404_SNP [dm6]	C	T	1.144e^-4	0.919	INTRON CG9336
3L	17441803	3L_17441803_SNP [dm3] 3L_17448703_SNP [dm6]	A	G	1.149e^-4	0.919	INTRON CG18265
3L	742992	3L_742992_DEL [dm3] 3L_742992_DEL [dm6]	ATGGTTTTTGATAACTAA...	A	1.150e^-4	0.919	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	10082495	2L_10082495_SNP [dm3] 2L_10082495_SNP [dm6]	G	A	1.154e^-4	0.919	INTRON CG44153
2L	15378351	2L_15378351_SNP [dm3] 2L_15378351_SNP [dm6]	C	T	1.156e^-4	0.919	INTERGENIC
X	11756868	X_11756868_SNP [dm3] X_11862835_SNP [dm6]	G	T	1.159e^-4	0.919	SYNONYMOUS_CODING ATP7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	743080	3L_743080_SNP [dm3] 3L_743080_SNP [dm6]	T	A	1.163e^-4	0.919	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	4952045	2L_4952045_SNP [dm3] 2L_4952045_SNP [dm6]	A	T	1.167e^-4	0.919	DOWNSTREAM Jon25Bii INTERGENIC
3R	19769710	3R_19769710_SNP [dm3] 3R_23943988_SNP [dm6]	G	A	1.169e^-4	0.919	SYNONYMOUS_CODING CG12268 UPSTREAM Gdh	TF binding site mE1_TFBS_cad
2R	11571818	2R_11571818_SNP [dm3] 2R_15684313_SNP [dm6]	C	T	1.172e^-4	0.919	SYNONYMOUS_CODING Ranbp11 DOWNSTREAM CG30082 EXON CR43429	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8362346	3L_8362346_SNP [dm3] 3L_8369246_SNP [dm6]	C	T	1.182e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	357751	2L_357751_SNP [dm3] 2L_357751_SNP [dm6]	G	C	1.183e^-4	0.919	SPLICE_SITE_REGION Ent1 UTR_5_PRIME Ent1 DOWNSTREAM CR45367 INTRON Ent1 EXON CR45366	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	17061765	X_17061765_SNP [dm3] X_17167732_SNP [dm6]	C	G	1.195e^-4	0.919	INTRON baz
X	17061777	X_17061777_SNP [dm3] X_17167744_SNP [dm6]	G	T	1.195e^-4	0.919	INTRON baz
X	17061793	X_17061793_SNP [dm3] X_17167760_SNP [dm6]	A	T	1.195e^-4	0.919	INTRON baz
X	17061814	X_17061814_DEL [dm3] X_17167781_DEL [dm6]	CAAGCTAAC	C	1.195e^-4	0.919	INTRON baz
2L	4364464	2L_4364464_SNP [dm3] 2L_4364464_SNP [dm6]	C	G	1.198e^-4	0.919	UPSTREAM CR45363 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	461574	3L_461574_SNP [dm3] 3L_461574_SNP [dm6]	C	A	1.199e^-4	0.919	INTRON klar
3L	5884780	3L_5884780_SNP [dm3] 3L_5891680_SNP [dm6]	T	G	1.208e^-4	0.919	INTERGENIC
2R	11575711	2R_11575711_SNP [dm3] 2R_15688206_SNP [dm6]	G	T	1.208e^-4	0.919	NON_SYNONYMOUS_CODING Cep89 SPLICE_SITE_REGION Cep89 DOWNSTREAM Ranbp11	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2683655	3L_2683655_SNP [dm3] 3L_2683655_SNP [dm6]	A	G	1.213e^-4	0.919	INTRON Fife
3L	7721452	3L_7721452_SNP [dm3] 3L_7728352_SNP [dm6]	A	G	1.223e^-4	0.919	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
2R	10925628	2R_10925628_SNP [dm3] 2R_15038123_SNP [dm6]	C	T	1.226e^-4	0.919	INTRON hbs
2L	8697403	2L_8697403_SNP [dm3] 2L_8697403_SNP [dm6]	T	G	1.238e^-4	0.919	INTRON Hnf4
2R	2346665	2R_2346665_INS [dm3] 2R_6459160_INS [dm6]	T	TCAC	1.241e^-4	0.919	INTERGENIC	transposable element FlyBase
2R	11570361	2R_11570361_SNP [dm3] 2R_15682856_SNP [dm6]	G	A	1.242e^-4	0.919	NON_SYNONYMOUS_CODING Ranbp11 DOWNSTREAM CG30091 EXON CR43429	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	16196776	3R_16196776_SNP [dm3] 3R_20371054_SNP [dm6]	C	A	1.250e^-4	0.919	INTERGENIC
2L	17283229	2L_17283229_SNP [dm3] 2L_17283229_SNP [dm6]	T	A	1.259e^-4	0.919	INTERGENIC
2R	11724908	2R_11724908_SNP [dm3] 2R_15837403_SNP [dm6]	C	T	1.260e^-4	0.919	INTRON tun	regulatory region REDfly_CRMs
3R	12745588	3R_12745588_SNP [dm3] 3R_16919866_SNP [dm6]	A	G	1.264e^-4	0.919	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	10852647	3L_10852647_SNP [dm3] 3L_10859547_SNP [dm6]	T	A	1.268e^-4	0.919	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_kn
3R	9771775	3R_9771775_SNP [dm3] 3R_13946053_SNP [dm6]	G	C	1.280e^-4	0.919	UPSTREAM Art6 INTERGENIC
3L	18202542	3L_18202542_SNP [dm3] 3L_18209442_SNP [dm6]	A	T	1.280e^-4	0.919	INTERGENIC
X	16855642	X_16855642_SNP [dm3] X_16961609_SNP [dm6]	C	A	1.281e^-4	0.919	SYNONYMOUS_CODING CG9086	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	20262200	X_20262200_SNP [dm3] X_20391173_SNP [dm6]	G	A	1.283e^-4	0.919	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15488893	3L_15488893_DEL [dm3] 3L_15495793_DEL [dm6]	TCT	T	1.291e^-4	0.919	UPSTREAM CG12355 & 1 other INTERGENIC
X	4094020	X_4094020_SNP [dm3] X_4199987_SNP [dm6]	T	C	1.295e^-4	0.919	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	21076580	2R_21076580_SNP [dm3] 2R_25189057_SNP [dm6]	C	T	1.296e^-4	0.919	UPSTREAM CG9380 INTRON CG9380
2R	12267152	2R_12267152_SNP [dm3] 2R_16379647_SNP [dm6]	T	A	1.307e^-4	0.919	UPSTREAM CG43187 EXON CR45316 & 1 other
2L	8986555	2L_8986555_SNP [dm3] 2L_8986555_SNP [dm6]	T	C	1.312e^-4	0.919	INTRON rost
2L	8986534	2L_8986534_SNP [dm3] 2L_8986534_SNP [dm6]	A	C	1.314e^-4	0.919	INTRON rost
X	21946768	X_21946768_SNP [dm3] X_22544932_SNP [dm6]	T	C	1.316e^-4	0.919	UPSTREAM CG17599 INTERGENIC
3L	9735039	3L_9735039_SNP [dm3] 3L_9741939_SNP [dm6]	A	T	1.319e^-4	0.919	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6899768	3L_6899768_SNP [dm3] 3L_6906668_SNP [dm6]	A	T	1.320e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13739800	2R_13739800_SNP [dm3] 2R_17852295_SNP [dm6]	G	T	1.325e^-4	0.919	UPSTREAM CG30323 INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	455074	3L_455074_SNP [dm3] 3L_455074_SNP [dm6]	C	T	1.336e^-4	0.919	INTRON klar
2R	3265898	2R_3265898_SNP [dm3] 2R_7378393_SNP [dm6]	C	A	1.350e^-4	0.919	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
3L	13557427	3L_13557427_INS [dm3] 3L_13564327_INS [dm6]	G	TA	1.353e^-4	0.919	INTRON bru-3
3L	13557430	3L_13557430_DEL [dm3] 3L_13564330_DEL [dm6]	GTTT	G	1.353e^-4	0.919	INTRON bru-3
X	12869261	X_12869261_SNP [dm3] X_12975228_SNP [dm6]	A	T	1.354e^-4	0.919	NON_SYNONYMOUS_CODING CG12716 UPSTREAM CR43152
2L	18871904	2L_18871904_SNP [dm3] 2L_18871904_SNP [dm6]	T	A	1.354e^-4	0.919	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3127602	2L_3127602_SNP [dm3] 2L_3127602_SNP [dm6]	G	A	1.379e^-4	0.919	SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8207850	3L_8207850_SNP [dm3] 3L_8214750_SNP [dm6]	T	C	1.380e^-4	0.919	UPSTREAM CG8012 INTERGENIC
3R	10122680	3R_10122680_SNP [dm3] 3R_14296958_SNP [dm6]	T	A	1.387e^-4	0.919	INTRON CG12207
2R	14451040	2R_14451040_SNP [dm3] 2R_18563535_SNP [dm6]	A	G	1.393e^-4	0.919	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9147422	2R_9147422_SNP [dm3] 2R_13259917_SNP [dm6]	A	T	1.396e^-4	0.919	UPSTREAM CG42319 INTERGENIC
3L	3143885	3L_3143885_SNP [dm3] 3L_3143885_SNP [dm6]	G	C	1.405e^-4	0.919	UTR_5_PRIME CG1291 UPSTREAM CG11537	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	21344585	3R_21344585_SNP [dm3] 3R_25518863_SNP [dm6]	G	T	1.407e^-4	0.919	INTRON msi	TF binding site mE1_TFBS_Trl
3L	16823020	3L_16823020_DEL [dm3] 3L_16829920_DEL [dm6]	TGCAGTTTTGCAAT...	T	1.407e^-4	0.919	UPSTREAM CG13024 INTERGENIC
3L	447150	3L_447150_SNP [dm3] 3L_447150_SNP [dm6]	A	C	1.414e^-4	0.919	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	5129982	3R_5129982_SNP [dm3] 3R_9304260_SNP [dm6]	C	G	1.415e^-4	0.919	INTRON CG8861
2R	8198528	2R_8198528_SNP [dm3] 2R_12311023_SNP [dm6]	T	C	1.417e^-4	0.919	NON_SYNONYMOUS_CODING CG30203 DOWNSTREAM CG17739
3R	9771782	3R_9771782_SNP [dm3] 3R_13946060_SNP [dm6]	A	G	1.425e^-4	0.919	UPSTREAM Art6 INTERGENIC
2L	4143122	2L_4143122_SNP [dm3] 2L_4143122_SNP [dm6]	A	G	1.426e^-4	0.919	INTERGENIC
3L	8518986	3L_8518986_SNP [dm3] 3L_8525886_SNP [dm6]	A	C	1.427e^-4	0.919	INTRON foi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	22249562	3R_22249562_SNP [dm3] 3R_26423840_SNP [dm6]	T	G	1.428e^-4	0.919	DOWNSTREAM CG6503 INTERGENIC
2L	4784697	2L_4784697_SNP [dm3] 2L_4784697_SNP [dm6]	G	T	1.429e^-4	0.919	INTRON CG15630
3L	20809699	3L_20809699_INS [dm3] 3L_20816599_INS [dm6]	T	TCTC	1.438e^-4	0.919	UTR_5_PRIME Pka-R1 UPSTREAM CG3618 DOWNSTREAM Mst77F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9147218	2R_9147218_SNP [dm3] 2R_13259713_SNP [dm6]	T	A	1.450e^-4	0.919	UPSTREAM CG42319 INTERGENIC
3R	5129759	3R_5129759_SNP [dm3] 3R_9304037_SNP [dm6]	C	A	1.450e^-4	0.919	INTRON CG8861
3R	5121954	3R_5121954_SNP [dm3] 3R_9296232_SNP [dm6]	A	G	1.454e^-4	0.919	INTRON CG8861
3L	712455	3L_712455_SNP [dm3] 3L_712455_SNP [dm6]	C	T	1.454e^-4	0.919	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	20888236	3L_20888236_SNP [dm3] 3L_20895136_SNP [dm6]	A	G	1.459e^-4	0.919	INTERGENIC
2L	7337049	2L_7337049_DEL [dm3] 2L_7337049_DEL [dm6]	TT	T	1.469e^-4	0.919	INTRON Wnt6
3L	20806649	3L_20806649_SNP [dm3] 3L_20813549_SNP [dm6]	A	C	1.471e^-4	0.919	NON_SYNONYMOUS_CODING CG3618 DOWNSTREAM CG3680
3L	20730754	3L_20730754_SNP [dm3] 3L_20737654_SNP [dm6]	A	G	1.473e^-4	0.919	SYNONYMOUS_CODING Gr77a INTRON CG13252
3R	23652110	3R_23652110_SNP [dm3] 3R_27826388_SNP [dm6]	A	C	1.487e^-4	0.919	INTRON CG34353	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	23652134	3R_23652134_SNP [dm3] 3R_27826412_SNP [dm6]	G	C	1.487e^-4	0.919	INTRON CG34353	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	4182643	2R_4182643_SNP [dm3] 2R_8295138_SNP [dm6]	C	T	1.487e^-4	0.919	INTERGENIC
3L	10702270	3L_10702270_SNP [dm3] 3L_10709170_SNP [dm6]	C	A	1.505e^-4	0.919	INTERGENIC
3L	14931260	3L_14931260_SNP [dm3] 3L_14938160_SNP [dm6]	G	C	1.507e^-4	0.919	INTRON DCX-EMAP
3L	15483234	3L_15483234_SNP [dm3] 3L_15490134_SNP [dm6]	A	C	1.507e^-4	0.919	INTERGENIC
2L	8933934	2L_8933934_SNP [dm3] 2L_8933934_SNP [dm6]	A	G	1.525e^-4	0.919	UPSTREAM Tsp29Fa DOWNSTREAM CG34398 INTERGENIC
3L	11897307	3L_11897307_SNP [dm3] 3L_11904207_SNP [dm6]	C	T	1.526e^-4	0.919	INTRON CG44837
2R	11849590	2R_11849590_SNP [dm3] 2R_15962085_SNP [dm6]	T	G	1.532e^-4	0.919	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20490111	3R_20490111_SNP [dm3] 3R_24664389_SNP [dm6]	G	A	1.534e^-4	0.919	UTR_5_PRIME slo	regulatory region REDfly_CRMs
3R	16196780	3R_16196780_SNP [dm3] 3R_20371058_SNP [dm6]	G	A	1.541e^-4	0.919	INTERGENIC
2R	6670733	2R_6670733_SNP [dm3] 2R_10783228_SNP [dm6]	T	C	1.542e^-4	0.919	UPSTREAM CG33144 INTRON CG33144 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	2242183	3R_2242183_SNP [dm3] 3R_6416461_SNP [dm6]	G	C	1.550e^-4	0.919	INTRON gpp
X	20218600	X_20218600_SNP [dm3] X_20347573_SNP [dm6]	T	A	1.565e^-4	0.919	INTERGENIC
X	11756923	X_11756923_SNP [dm3] X_11862890_SNP [dm6]	C	A	1.571e^-4	0.919	INTRON ATP7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8391746	3L_8391746_SNP [dm3] 3L_8398646_SNP [dm6]	C	A	1.574e^-4	0.919	INTRON CG7120
3L	12146645	3L_12146645_SNP [dm3] 3L_12153545_SNP [dm6]	T	C	1.575e^-4	0.919	SYNONYMOUS_CODING Nrx-IV
2R	11724954	2R_11724954_SNP [dm3] 2R_15837449_SNP [dm6]	A	G	1.584e^-4	0.919	INTRON tun	regulatory region REDfly_CRMs
3R	3156248	3R_3156248_SNP [dm3] 3R_7330526_SNP [dm6]	A	T	1.586e^-4	0.919	UPSTREAM CR44337 INTERGENIC
3L	4950263	3L_4950263_SNP [dm3] 3L_4950263_SNP [dm6]	C	T	1.593e^-4	0.919	INTRON Con	TF binding site mE1_TFBS_chinmo
2R	8137678	2R_8137678_SNP [dm3] 2R_12250173_SNP [dm6]	T	C	1.601e^-4	0.919	INTERGENIC
2L	19975292	2L_19975292_SNP [dm3] 2L_19975292_SNP [dm6]	G	A	1.612e^-4	0.919	INTRON CG43861
2R	6262640	2R_6262640_INS [dm3] 2R_10375135_INS [dm6]	C	CCC	1.618e^-4	0.919	INTRON CG42732
3R	16196775	3R_16196775_SNP [dm3] 3R_20371053_SNP [dm6]	A	T	1.618e^-4	0.919	INTERGENIC
2L	12415089	2L_12415089_SNP [dm3] 2L_12415089_SNP [dm6]	G	A	1.619e^-4	0.919	INTRON vir-1
3L	16331071	3L_16331071_SNP [dm3] 3L_16337971_SNP [dm6]	C	A	1.619e^-4	0.919	INTERGENIC
2R	12633060	2R_12633060_SNP [dm3] 2R_16745555_SNP [dm6]	C	T	1.620e^-4	0.919	UTR_3_PRIME CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad
3L	8885634	3L_8885634_SNP [dm3] 3L_8892534_SNP [dm6]	A	T	1.625e^-4	0.919	SYNONYMOUS_CODING Mcm7	TF binding site BDTNP1_TFBS_twi
2L	9443434	2L_9443434_SNP [dm3] 2L_9443434_SNP [dm6]	C	T	1.629e^-4	0.919	INTRON numb
3L	16983298	3L_16983298_INS [dm3] 3L_16990198_INS [dm6]	A	AG	1.631e^-4	0.919	INTRON Exn
3R	23339779	3R_23339779_SNP [dm3] 3R_27514057_SNP [dm6]	A	G	1.632e^-4	0.919	INTERGENIC
3R	24831732	3R_24831732_SNP [dm3] 3R_29006010_SNP [dm6]	G	C	1.640e^-4	0.919	INTRON wat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11666483	3R_11666483_SNP [dm3] 3R_15840761_SNP [dm6]	G	C	1.644e^-4	0.919	SYNONYMOUS_CODING spn-E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3409656	2L_3409656_SNP [dm3] 2L_3409656_SNP [dm6]	T	A	1.647e^-4	0.919	UPSTREAM CG8840 INTRON pgant2
3L	16983394	3L_16983394_SNP [dm3] 3L_16990294_SNP [dm6]	C	A	1.666e^-4	0.919	INTRON Exn
2R	17930230	2R_17930230_SNP [dm3] 2R_22042725_SNP [dm6]	T	C	1.684e^-4	0.919	SYNONYMOUS_CODING PpD5
X	10719310	X_10719310_DEL [dm3] X_10825277_DEL [dm6]	AA	A	1.685e^-4	0.919	DOWNSTREAM CR45624 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2894083	3L_2894083_DEL [dm3] 3L_2894083_DEL [dm6]	TT	G	1.689e^-4	0.919	UPSTREAM Shab INTERGENIC
3L	9500290	3L_9500290_SNP [dm3] 3L_9507190_SNP [dm6]	T	C	1.693e^-4	0.919	UTR_3_PRIME CG3408	TF binding site mE1_TFBS_HSA
2L	4143121	2L_4143121_SNP [dm3] 2L_4143121_SNP [dm6]	G	T	1.700e^-4	0.919	INTERGENIC
3L	7207735	3L_7207735_SNP [dm3] 3L_7214635_SNP [dm6]	G	A	1.703e^-4	0.919	INTERGENIC
3R	20489343	3R_20489343_SNP [dm3] 3R_24663621_SNP [dm6]	G	A	1.707e^-4	0.919	INTRON slo	regulatory region REDfly_CRMs
2L	19896738	2L_19896738_SNP [dm3] 2L_19896738_SNP [dm6]	T	A	1.709e^-4	0.919	INTRON sick
3R	20602541	3R_20602541_SNP [dm3] 3R_24776819_SNP [dm6]	G	A	1.712e^-4	0.919	INTRON CG42331
3L	17456726	3L_17456726_SNP [dm3] 3L_17463626_SNP [dm6]	A	G	1.724e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	7719564	3L_7719564_SNP [dm3] 3L_7726464_SNP [dm6]	A	C	1.731e^-4	0.919	UTR_5_PRIME CG7457 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7721230	3L_7721230_SNP [dm3] 3L_7728130_SNP [dm6]	G	A	1.731e^-4	0.919	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_HSA
3L	15483232	3L_15483232_SNP [dm3] 3L_15490132_SNP [dm6]	A	T	1.753e^-4	0.919	INTERGENIC
3R	22778961	3R_22778961_SNP [dm3] 3R_26953239_SNP [dm6]	G	A	1.754e^-4	0.919	UTR_5_PRIME CG6330 INTRON CG6330	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	16202334	3L_16202334_SNP [dm3] 3L_16209234_SNP [dm6]	A	T	1.757e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_cad
2L	3291545	2L_3291545_SNP [dm3] 2L_3291545_SNP [dm6]	G	T	1.758e^-4	0.919	SYNONYMOUS_CODING CG9664 UTR_3_PRIME CG9664	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7354569	2L_7354569_SNP [dm3] 2L_7354569_SNP [dm6]	G	C	1.759e^-4	0.919	INTERGENIC
X	5742562	X_5742562_DEL [dm3] X_5848529_DEL [dm6]	GGCCAGTGGCCAGTG...	G	1.766e^-4	0.919	INTERGENIC
X	8156849	X_8156849_SNP [dm3] X_8262816_SNP [dm6]	T	C	1.780e^-4	0.919	INTRON CG1632	TF binding site BDTNP1_TFBS_da
3R	22141451	3R_22141451_SNP [dm3] 3R_26315729_SNP [dm6]	C	T	1.780e^-4	0.919	INTERGENIC
3R	2849733	3R_2849733_SNP [dm3] 3R_7024011_SNP [dm6]	G	T	1.781e^-4	0.919	INTERGENIC
2R	11724775	2R_11724775_SNP [dm3] 2R_15837270_SNP [dm6]	A	G	1.788e^-4	0.919	INTRON tun	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	7721501	3L_7721501_SNP [dm3] 3L_7728401_SNP [dm6]	T	G	1.792e^-4	0.919	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
3R	10182499	3R_10182499_SNP [dm3] 3R_14356777_SNP [dm6]	T	G	1.797e^-4	0.919	INTRON NK7.1
2L	6743782	2L_6743782_INS [dm3] 2L_6743782_INS [dm6]	A	ACTA	1.801e^-4	0.919	DOWNSTREAM CG31910 INTRON CG11221
3R	2083489	3R_2083489_SNP [dm3] 3R_6257767_SNP [dm6]	T	A	1.815e^-4	0.919	INTERGENIC
X	13173591	X_13173591_SNP [dm3] X_13279558_SNP [dm6]	C	T	1.817e^-4	0.919	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl
X	14678933	X_14678933_SNP [dm3] X_14784900_SNP [dm6]	A	C	1.817e^-4	0.919	UTR_3_PRIME Ag5r UPSTREAM Ag5r2 DOWNSTREAM Ag5r
3L	20811748	3L_20811748_SNP [dm3] 3L_20818648_SNP [dm6]	C	G	1.818e^-4	0.919	UPSTREAM Pka-R1 & 1 other INTRON Pka-R1
3R	9817342	3R_9817342_INS [dm3] 3R_13991620_INS [dm6]	C	CCATG	1.821e^-4	0.919	INTRON rdx
3R	9817346	3R_9817346_INS [dm3] 3R_13991624_INS [dm6]	T	TGATT	1.821e^-4	0.919	INTRON rdx
3L	7726328	3L_7726328_SNP [dm3] 3L_7733228_SNP [dm6]	T	C	1.828e^-4	0.919	DOWNSTREAM Snmp2 INTRON CG32373
X	4091100	X_4091100_SNP [dm3] X_4197067_SNP [dm6]	G	C	1.832e^-4	0.919	INTRON Fas2
X	8156039	X_8156039_SNP [dm3] X_8262006_SNP [dm6]	A	T	1.851e^-4	0.919	INTRON CG1632
2L	20404418	2L_20404418_SNP [dm3] 2L_20404418_SNP [dm6]	G	A	1.851e^-4	0.919	INTRON CG10947
3L	8391780	3L_8391780_SNP [dm3] 3L_8398680_SNP [dm6]	A	C	1.858e^-4	0.919	INTRON CG7120
3R	2868311	3R_2868311_INS [dm3] 3R_7042589_INS [dm6]	C	CGGA	1.863e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	8807137	2L_8807137_SNP [dm3] 2L_8807137_SNP [dm6]	T	C	1.866e^-4	0.919	INTERGENIC
3L	20732890	3L_20732890_SNP [dm3] 3L_20739790_SNP [dm6]	T	C	1.871e^-4	0.919	UPSTREAM Gr77a INTRON CG13252
2R	16325368	2R_16325368_SNP [dm3] 2R_20437863_SNP [dm6]	C	A	1.871e^-4	0.919	INTRON CG12484
2R	16341457	2R_16341457_SNP [dm3] 2R_20453952_SNP [dm6]	G	A	1.891e^-4	0.919	INTRON CG12484
X	4235722	X_4235722_SNP [dm3] X_4341689_SNP [dm6]	G	A	1.892e^-4	0.919	INTRON norpA
3L	7105602	3L_7105602_SNP [dm3] 3L_7112502_SNP [dm6]	A	T	1.894e^-4	0.919	INTRON form3
2L	9501665	2L_9501665_SNP [dm3] 2L_9501665_SNP [dm6]	C	T	1.901e^-4	0.919	INTRON CG33298
3L	8582894	3L_8582894_SNP [dm3] 3L_8589794_SNP [dm6]	G	C	1.902e^-4	0.919	UPSTREAM CG43078 INTRON CG43078
2R	20334500	2R_20334500_SNP [dm3] 2R_24446977_SNP [dm6]	A	T	1.910e^-4	0.919	DOWNSTREAM CG3483 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	4933994	2L_4933994_SNP [dm3] 2L_4933994_SNP [dm6]	T	A	1.918e^-4	0.919	INTRON hoe2
3L	7721198	3L_7721198_SNP [dm3] 3L_7728098_SNP [dm6]	G	T	1.921e^-4	0.919	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_HSA
3L	19495062	3L_19495062_SNP [dm3] 3L_19501962_SNP [dm6]	T	A	1.922e^-4	0.919	SYNONYMOUS_CODING CG9452
3L	11387454	3L_11387454_SNP [dm3] 3L_11394354_SNP [dm6]	T	A	1.925e^-4	0.919	UPSTREAM CG11726 INTERGENIC
2L	19715501	2L_19715501_SNP [dm3] 2L_19715501_SNP [dm6]	C	T	1.931e^-4	0.919	INTRON Lar	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2L	19890129	2L_19890129_SNP [dm3] 2L_19890129_SNP [dm6]	G	A	1.938e^-4	0.919	DOWNSTREAM CG10481 INTRON sick
3L	11146537	3L_11146537_SNP [dm3] 3L_11153437_SNP [dm6]	G	T	1.943e^-4	0.919	INTRON CG32082
X	16855733	X_16855733_SNP [dm3] X_16961700_SNP [dm6]	G	T	1.944e^-4	0.919	INTRON CG9086	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	14679644	2L_14679644_SNP [dm3] 2L_14679644_SNP [dm6]	A	C	1.949e^-4	0.919	INTRON osp
2L	8698764	2L_8698764_SNP [dm3] 2L_8698764_SNP [dm6]	A	G	1.949e^-4	0.919	INTRON Hnf4
3R	5963561	3R_5963561_SNP [dm3] 3R_10137839_SNP [dm6]	T	C	1.953e^-4	0.919	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	10811113	3R_10811113_SNP [dm3] 3R_14985391_SNP [dm6]	G	A	1.961e^-4	0.919	INTERGENIC
3L	16202321	3L_16202321_SNP [dm3] 3L_16209221_SNP [dm6]	G	T	1.964e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_cad
3L	16071292	3L_16071292_SNP [dm3] 3L_16078192_SNP [dm6]	C	T	1.966e^-4	0.919	INTRON Mbs	TF binding site BDTNP1_TFBS_dl
2R	11571296	2R_11571296_SNP [dm3] 2R_15683791_SNP [dm6]	T	A	1.969e^-4	0.919	SYNONYMOUS_CODING Ranbp11 EXON CR43429	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17920188	2R_17920188_DEL [dm3] 2R_22032683_DEL [dm6]	GGGCTGG	G	1.970e^-4	0.919	INTRON CG34370
X	5120460	X_5120460_SNP [dm3] X_5226427_SNP [dm6]	A	G	1.976e^-4	0.919	INTRON CG15465 & 1 other
3R	22153955	3R_22153955_SNP [dm3] 3R_26328233_SNP [dm6]	A	T	1.987e^-4	0.919	INTRON CG33970
3L	16187579	3L_16187579_SNP [dm3] 3L_16194479_SNP [dm6]	C	A	1.987e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_cad
2L	10085830	2L_10085830_DEL [dm3] 2L_10085830_DEL [dm6]	AAA	A	1.994e^-4	0.919	INTRON CG44153
X	21128698	X_21128698_SNP [dm3] X_21257671_SNP [dm6]	G	A	1.998e^-4	0.919	INTRON CG32521
2R	11571935	2R_11571935_SNP [dm3] 2R_15684430_SNP [dm6]	G	T	2.007e^-4	0.919	SYNONYMOUS_CODING Ranbp11 DOWNSTREAM CG30082 EXON CR43429	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16303177	2R_16303177_SNP [dm3] 2R_20415672_SNP [dm6]	C	T	2.025e^-4	0.919	INTERGENIC
2L	19079237	2L_19079237_SNP [dm3] 2L_19079237_SNP [dm6]	C	T	2.028e^-4	0.919	UPSTREAM CG10700 DOWNSTREAM Lim3 INTERGENIC
2R	16864005	2R_16864005_SNP [dm3] 2R_20976500_SNP [dm6]	A	T	2.033e^-4	0.919	UPSTREAM CG9344 INTRON CG34115	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	5849474	3L_5849474_SNP [dm3] 3L_5856374_SNP [dm6]	C	T	2.036e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25759599	3R_25759599_SNP [dm3] 3R_29933877_SNP [dm6]	C	T	2.037e^-4	0.919	NON_SYNONYMOUS_CODING CG42557 START_GAINED CG42558 UTR_5_PRIME CG42558 UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13907965	2L_13907965_SNP [dm3] 2L_13907965_SNP [dm6]	A	G	2.049e^-4	0.919	SPLICE_SITE_REGION Ance INTRON Ance	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	10435085	3R_10435085_SNP [dm3] 3R_14609363_SNP [dm6]	G	T	2.050e^-4	0.919	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	3126404	2L_3126404_SNP [dm3] 2L_3126404_SNP [dm6]	G	A	2.058e^-4	0.919	NON_SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	16794266	2R_16794266_SNP [dm3] 2R_20906761_SNP [dm6]	C	G	2.060e^-4	0.919	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
2R	16794363	2R_16794363_SNP [dm3] 2R_20906858_SNP [dm6]	T	A	2.060e^-4	0.919	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
2R	16794370	2R_16794370_SNP [dm3] 2R_20906865_SNP [dm6]	C	T	2.060e^-4	0.919	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
2R	16794579	2R_16794579_SNP [dm3] 2R_20907074_SNP [dm6]	T	A	2.060e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	21779550	2L_21779550_INS [dm3] 2L_21779550_INS [dm6]	C	CTATTCTTATTATC...	2.070e^-4	0.919	INTRON CG31612
3L	743046	3L_743046_SNP [dm3] 3L_743046_SNP [dm6]	A	T	2.071e^-4	0.919	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	18278806	2R_18278806_SNP [dm3] 2R_22391301_SNP [dm6]	A	G	2.074e^-4	0.919	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14197974	3L_14197974_SNP [dm3] 3L_14204874_SNP [dm6]	C	T	2.078e^-4	0.919	UPSTREAM nuf DOWNSTREAM CG32141 INTRON nuf	TF binding site BDTNP1_TFBS_dl
2L	19890116	2L_19890116_SNP [dm3] 2L_19890116_SNP [dm6]	T	A	2.078e^-4	0.919	DOWNSTREAM CG10481 INTRON sick
3L	8908321	3L_8908321_SNP [dm3] 3L_8915221_SNP [dm6]	C	T	2.081e^-4	0.919	UPSTREAM CR43970 INTRON Tsp66E
2L	7341286	2L_7341286_SNP [dm3] 2L_7341286_SNP [dm6]	T	G	2.088e^-4	0.919	INTRON Wnt6	TF binding site mE1_TFBS_sbb
3R	10436834	3R_10436834_SNP [dm3] 3R_14611112_SNP [dm6]	G	A	2.095e^-4	0.919	INTRON CG14853
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	2.099e^-4	0.919	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
2R	16794328	2R_16794328_SNP [dm3] 2R_20906823_SNP [dm6]	G	A	2.102e^-4	0.919	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
2R	16794339	2R_16794339_SNP [dm3] 2R_20906834_SNP [dm6]	T	A	2.102e^-4	0.919	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
3L	9500301	3L_9500301_SNP [dm3] 3L_9507201_SNP [dm6]	T	C	2.103e^-4	0.919	UTR_3_PRIME CG3408	TF binding site mE1_TFBS_HSA
3R	2868309	3R_2868309_SNP [dm3] 3R_7042587_SNP [dm6]	G	A	2.115e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	19960323	2L_19960323_SNP [dm3] 2L_19960323_SNP [dm6]	C	T	2.118e^-4	0.919	SYNONYMOUS_CODING CG34051 DOWNSTREAM CoIV & 1 other	TF binding site mE1_TFBS_sens
3L	743058	3L_743058_SNP [dm3] 3L_743058_SNP [dm6]	T	A	2.121e^-4	0.919	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	7257568	3L_7257568_SNP [dm3] 3L_7264468_SNP [dm6]	G	A	2.123e^-4	0.919	UPSTREAM CG14830 INTERGENIC
3L	12052968	3L_12052968_SNP [dm3] 3L_12059868_SNP [dm6]	T	G	2.128e^-4	0.919	INTRON rols	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	6058381	X_6058381_SNP [dm3] X_6164348_SNP [dm6]	T	C	2.145e^-4	0.919	INTRON Ca-alpha1T
3R	9817323	3R_9817323_SNP [dm3] 3R_13991601_SNP [dm6]	T	A	2.146e^-4	0.919	INTRON rdx
2R	9147482	2R_9147482_SNP [dm3] 2R_13259977_SNP [dm6]	A	G	2.150e^-4	0.919	UPSTREAM CG42319 INTERGENIC
3R	25760016	3R_25760016_SNP [dm3] 3R_29934294_SNP [dm6]	A	C	2.162e^-4	0.919	NON_SYNONYMOUS_CODING CG42558 UTR_3_PRIME CG42557 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad
2L	8338644	2L_8338644_SNP [dm3] 2L_8338644_SNP [dm6]	G	A	2.168e^-4	0.919	SYNONYMOUS_CODING CG14274
3L	712319	3L_712319_INS [dm3] 3L_712319_INS [dm6]	C	CA	2.169e^-4	0.919	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712342	3L_712342_SNP [dm3] 3L_712342_SNP [dm6]	A	T	2.169e^-4	0.919	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	462333	3L_462333_SNP [dm3] 3L_462333_SNP [dm6]	C	T	2.178e^-4	0.919	NON_SYNONYMOUS_CODING klar UTR_5_PRIME klar
X	6058477	X_6058477_SNP [dm3] X_6164444_SNP [dm6]	G	A	2.184e^-4	0.919	INTRON Ca-alpha1T
2L	7338811	2L_7338811_SNP [dm3] 2L_7338811_SNP [dm6]	A	T	2.190e^-4	0.919	INTRON Wnt6
2R	6670604	2R_6670604_INS [dm3] 2R_10783099_INS [dm6]	T	TT	2.191e^-4	0.919	UPSTREAM CG33144 INTRON CG33144 EXON CR44299	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	22181571	2L_22181571_SNP [dm3] 2L_22181571_SNP [dm6]	C	A	2.204e^-4	0.919	INTRON CG3635
2L	21866518	2L_21866518_SNP [dm3] 2L_21866518_SNP [dm6]	A	G	2.204e^-4	0.919	UPSTREAM CR44917 & 1 other DOWNSTREAM CR44919 INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2669602	2L_2669602_SNP [dm3] 2L_2669602_SNP [dm6]	G	T	2.215e^-4	0.919	UPSTREAM Gr23a INTERGENIC
2R	21079264	2R_21079264_SNP [dm3] 2R_25191741_SNP [dm6]	A	T	2.218e^-4	0.919	INTRON CG9380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17945302	2R_17945302_SNP [dm3] 2R_22057797_SNP [dm6]	C	A	2.223e^-4	0.919	UPSTREAM CG13500 INTERGENIC	TF binding site mE1_TFBS_cad
X	21160844	X_21160844_SNP [dm3] X_21289817_SNP [dm6]	G	C	2.223e^-4	0.919	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7337056	2L_7337056_DEL [dm3] 2L_7337056_DEL [dm6]	GGGTCCGGAAATAGCGAAAA...	T	2.229e^-4	0.919	INTRON Wnt6
2L	386295	2L_386295_SNP [dm3] 2L_386295_SNP [dm6]	C	A	2.231e^-4	0.919	INTRON al
2L	2922161	2L_2922161_SNP [dm3] 2L_2922161_SNP [dm6]	T	A	2.235e^-4	0.919	INTRON lilli
2R	17944179	2R_17944179_SNP [dm3] 2R_22056674_SNP [dm6]	G	A	2.235e^-4	0.919	SYNONYMOUS_CODING CG13500	TF binding site mE1_TFBS_cad
2L	10110882	2L_10110882_SNP [dm3] 2L_10110882_SNP [dm6]	C	T	2.247e^-4	0.919	INTRON CG44153 & 1 other
3R	8110850	3R_8110850_SNP [dm3] 3R_12285128_SNP [dm6]	T	A	2.248e^-4	0.919	INTRON svp
2L	8696998	2L_8696998_SNP [dm3] 2L_8696998_SNP [dm6]	C	G	2.261e^-4	0.919	INTRON Hnf4	TF binding site mE1_TFBS_cnc
3L	17618384	3L_17618384_SNP [dm3] 3L_17625284_SNP [dm6]	G	A	2.263e^-4	0.919	INTRON CG7510	TF binding site mE1_TFBS_inv
2L	9501642	2L_9501642_SNP [dm3] 2L_9501642_SNP [dm6]	G	C	2.265e^-4	0.919	INTRON CG33298
2L	18872033	2L_18872033_SNP [dm3] 2L_18872033_SNP [dm6]	T	A	2.266e^-4	0.919	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6810770	2L_6810770_SNP [dm3] 2L_6810770_SNP [dm6]	G	C	2.269e^-4	0.919	INTERGENIC
X	12273737	X_12273737_SNP [dm3] X_12379704_SNP [dm6]	G	A	2.270e^-4	0.919	INTERGENIC
X	4138181	X_4138181_SNP [dm3] X_4244148_SNP [dm6]	T	G	2.279e^-4	0.919	UTR_3_PRIME Muc4B
2R	17934212	2R_17934212_SNP [dm3] 2R_22046707_SNP [dm6]	A	G	2.280e^-4	0.919	INTERGENIC
3L	712335	3L_712335_SNP [dm3] 3L_712335_SNP [dm6]	T	A	2.290e^-4	0.919	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	7257559	3L_7257559_SNP [dm3] 3L_7264459_SNP [dm6]	G	A	2.291e^-4	0.919	UPSTREAM CG14830 INTERGENIC
3L	20739975	3L_20739975_SNP [dm3] 3L_20746875_SNP [dm6]	C	T	2.294e^-4	0.919	INTERGENIC
3R	8481232	3R_8481232_DEL [dm3] 3R_12655510_DEL [dm6]	ACA	A	2.297e^-4	0.919	INTRON CG6225
X	4091094	X_4091094_DEL [dm3] X_4197061_DEL [dm6]	AAA	A	2.301e^-4	0.919	INTRON Fas2
3L	17442082	3L_17442082_SNP [dm3] 3L_17448982_SNP [dm6]	T	C	2.305e^-4	0.919	INTRON CG18265
3L	16337612	3L_16337612_SNP [dm3] 3L_16344512_SNP [dm6]	G	A	2.311e^-4	0.919	SYNONYMOUS_CODING CG4998	TF binding site mE1_TFBS_cad
X	4557751	X_4557751_SNP [dm3] X_4663718_SNP [dm6]	G	A	2.312e^-4	0.919	INTRON CG3009
X	20272005	X_20272005_SNP [dm3] X_20400978_SNP [dm6]	A	T	2.314e^-4	0.919	SYNONYMOUS_CODING HERC2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9853732	2L_9853732_SNP [dm3] 2L_9853732_SNP [dm6]	A	T	2.321e^-4	0.919	INTRON nAChRalpha6
3R	25119684	3R_25119684_SNP [dm3] 3R_29293962_SNP [dm6]	T	C	2.327e^-4	0.919	UTR_3_PRIME CG14506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	12456228	2R_12456228_SNP [dm3] 2R_16568723_SNP [dm6]	T	C	2.329e^-4	0.919	SYNONYMOUS_CODING CG4945	TF binding site mE1_TFBS_cad
2L	21388373	2L_21388373_SNP [dm3] 2L_21388373_SNP [dm6]	T	C	2.332e^-4	0.919	INTRON nrv3
3R	25315635	3R_25315635_SNP [dm3] 3R_29489913_SNP [dm6]	T	C	2.332e^-4	0.919	SYNONYMOUS_CODING CG2006 UPSTREAM CG2321 DOWNSTREAM Spase12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8447066	2L_8447066_SNP [dm3] 2L_8447066_SNP [dm6]	C	G	2.334e^-4	0.919	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_inv
2L	9426788	2L_9426788_SNP [dm3] 2L_9426788_SNP [dm6]	C	T	2.335e^-4	0.919	UTR_5_PRIME Fbp2 UPSTREAM Fbp2 DOWNSTREAM Mco1
3R	10915855	3R_10915855_SNP [dm3] 3R_15090133_SNP [dm6]	G	C	2.335e^-4	0.919	INTRON CG6966	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	8833148	2R_8833148_SNP [dm3] 2R_12945643_SNP [dm6]	A	T	2.338e^-4	0.919	INTRON Mdr49	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	19991069	2L_19991069_SNP [dm3] 2L_19991069_SNP [dm6]	C	T	2.345e^-4	0.919	INTRON CG43861
X	11756922	X_11756922_SNP [dm3] X_11862889_SNP [dm6]	T	A	2.348e^-4	0.919	INTRON ATP7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19472074	3L_19472074_SNP [dm3] 3L_19478974_SNP [dm6]	G	A	2.351e^-4	0.919	UPSTREAM CR32207 DOWNSTREAM CR42842 INTERGENIC
2L	9427038	2L_9427038_SNP [dm3] 2L_9427038_SNP [dm6]	G	C	2.353e^-4	0.919	NON_SYNONYMOUS_CODING Fbp2 UPSTREAM CG42847 DOWNSTREAM Mco1
2L	9427154	2L_9427154_SNP [dm3] 2L_9427154_SNP [dm6]	G	A	2.353e^-4	0.919	NON_SYNONYMOUS_CODING Fbp2 UPSTREAM CG42847 DOWNSTREAM Mco1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9427486	2L_9427486_SNP [dm3] 2L_9427486_SNP [dm6]	C	T	2.353e^-4	0.919	SYNONYMOUS_CODING Fbp2 UPSTREAM CG42847
2L	9428810	2L_9428810_SNP [dm3] 2L_9428810_SNP [dm6]	T	G	2.353e^-4	0.919	UTR_3_PRIME FucTB DOWNSTREAM Fbp2 & 1 other
2L	9430958	2L_9430958_SNP [dm3] 2L_9430958_SNP [dm6]	A	T	2.353e^-4	0.919	UTR_5_PRIME FucTB UPSTREAM FucTB & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11251263	2R_11251263_SNP [dm3] 2R_15363758_SNP [dm6]	T	A	2.354e^-4	0.919	INTRON unc-5
3R	6253276	3R_6253276_SNP [dm3] 3R_10427554_SNP [dm6]	G	A	2.376e^-4	0.919	INTERGENIC
2R	14932148	2R_14932148_DEL [dm3] 2R_19044643_DEL [dm6]	AA	A	2.376e^-4	0.919	INTERGENIC
2R	13739214	2R_13739214_SNP [dm3] 2R_17851709_SNP [dm6]	A	G	2.393e^-4	0.919	INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
2L	17283223	2L_17283223_SNP [dm3] 2L_17283223_SNP [dm6]	T	A	2.395e^-4	0.919	INTERGENIC
3R	10171372	3R_10171372_SNP [dm3] 3R_14345650_SNP [dm6]	C	T	2.396e^-4	0.919	INTRON NK7.1	TF binding site mE1_TFBS_cad
3L	15235256	3L_15235256_SNP [dm3] 3L_15242156_SNP [dm6]	C	A	2.406e^-4	0.919	UTR_3_PRIME Tollo	TF binding site mE1_TFBS_HSA
3R	21295516	3R_21295516_DEL [dm3] 3R_25469794_DEL [dm6]	ATTAA	A	2.416e^-4	0.919	INTRON Fur1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	1903360	3L_1903360_SNP [dm3] 3L_1903360_SNP [dm6]	A	G	2.419e^-4	0.919	INTRON CG1887
X	14035974	X_14035974_DEL [dm3] X_14141941_DEL [dm6]	TT	T	2.427e^-4	0.919	EXON CR44658
2L	9430078	2L_9430078_SNP [dm3] 2L_9430078_SNP [dm6]	G	A	2.434e^-4	0.919	NON_SYNONYMOUS_CODING FucTB UPSTREAM FucTB	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14186755	3R_14186755_SNP [dm3] 3R_18361033_SNP [dm6]	G	A	2.435e^-4	0.919	UPSTREAM CG15803 & 1 other EXON CR45634
3L	3132115	3L_3132115_SNP [dm3] 3L_3132115_SNP [dm6]	G	A	2.439e^-4	0.919	INTRON CG11537
2L	4145075	2L_4145075_SNP [dm3] 2L_4145075_SNP [dm6]	T	A	2.441e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9428316	2L_9428316_SNP [dm3] 2L_9428316_SNP [dm6]	A	C	2.442e^-4	0.919	SYNONYMOUS_CODING CG42847 DOWNSTREAM FucTB & 1 other
2R	11576437	2R_11576437_SNP [dm3] 2R_15688932_SNP [dm6]	T	C	2.443e^-4	0.919	NON_SYNONYMOUS_CODING Cep89 UPSTREAM CG30090	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16436597	2R_16436597_SNP [dm3] 2R_20549092_SNP [dm6]	C	T	2.459e^-4	0.919	NON_SYNONYMOUS_CODING Obp57d UTR_3_PRIME Cpr57A UPSTREAM Obp57e DOWNSTREAM Cpr57A	regulatory region REDfly_CRMs
3L	16495547	3L_16495547_SNP [dm3] 3L_16502447_SNP [dm6]	A	G	2.469e^-4	0.919	SYNONYMOUS_CODING CG43373 INTRON CG43373	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8214212	3L_8214212_SNP [dm3] 3L_8221112_SNP [dm6]	G	T	2.475e^-4	0.919	INTERGENIC
3L	22439138	3L_22439138_SNP [dm3] 3L_22446038_SNP [dm6]	G	A	2.475e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	19215801	2L_19215801_SNP [dm3] 2L_19215801_SNP [dm6]	C	A	2.478e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9430549	2L_9430549_SNP [dm3] 2L_9430549_SNP [dm6]	A	C	2.480e^-4	0.919	UPSTREAM FucTB & 1 other INTRON FucTB
2L	588419	2L_588419_SNP [dm3] 2L_588419_SNP [dm6]	T	A	2.481e^-4	0.919	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
3R	6105532	3R_6105532_SNP [dm3] 3R_10279810_SNP [dm6]	C	T	2.482e^-4	0.919	INTRON CG43143
2L	8664588	2L_8664588_SNP [dm3] 2L_8664588_SNP [dm6]	A	T	2.483e^-4	0.919	INTRON Sema-1a
2R	3747738	2R_3747738_INS [dm3] 2R_7860233_INS [dm6]	G	GAG	2.483e^-4	0.919	INTRON Dgk
2L	6505574	2L_6505574_SNP [dm3] 2L_6505574_SNP [dm6]	A	G	2.484e^-4	0.919	INTRON CG31637
3L	412023	3L_412023_SNP [dm3] 3L_412023_SNP [dm6]	G	T	2.490e^-4	0.919	INTERGENIC
X	6477081	X_6477081_SNP [dm3] X_6583048_SNP [dm6]	G	T	2.506e^-4	0.919	SYNONYMOUS_CODING CG34417 INTRON CG34417
2L	4142233	2L_4142233_SNP [dm3] 2L_4142233_SNP [dm6]	C	T	2.509e^-4	0.919	INTERGENIC
2R	3265646	2R_3265646_SNP [dm3] 2R_7378141_SNP [dm6]	G	C	2.509e^-4	0.919	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
3R	2867868	3R_2867868_SNP [dm3] 3R_7042146_SNP [dm6]	G	A	2.518e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10428680	3R_10428680_SNP [dm3] 3R_14602958_SNP [dm6]	A	G	2.522e^-4	0.919	UPSTREAM stumps INTRON stumps
3R	10365089	3R_10365089_SNP [dm3] 3R_14539367_SNP [dm6]	T	C	2.525e^-4	0.919	INTRON Pde6
3L	14561228	3L_14561228_SNP [dm3] 3L_14568128_SNP [dm6]	T	G	2.526e^-4	0.919	UTR_3_PRIME CG42758
3R	6218645	3R_6218645_SNP [dm3] 3R_10392923_SNP [dm6]	A	G	2.536e^-4	0.919	INTRON cwo
3L	7296139	3L_7296139_DEL [dm3] 3L_7303039_DEL [dm6]	AA	A	2.540e^-4	0.919	INTRON unc-13-4A
3L	743426	3L_743426_SNP [dm3] 3L_743426_SNP [dm6]	C	T	2.546e^-4	0.919	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	7100403	2L_7100403_SNP [dm3] 2L_7100403_SNP [dm6]	G	A	2.550e^-4	0.919	SYNONYMOUS_CODING Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	14157661	X_14157661_SNP [dm3] X_14263628_SNP [dm6]	C	T	2.556e^-4	0.919	SYNONYMOUS_CODING CG1461
2L	1675714	2L_1675714_SNP [dm3] 2L_1675714_SNP [dm6]	T	A	2.561e^-4	0.919	INTRON chinmo
2L	1675720	2L_1675720_SNP [dm3] 2L_1675720_SNP [dm6]	C	G	2.561e^-4	0.919	INTRON chinmo
3L	5884782	3L_5884782_SNP [dm3] 3L_5891682_SNP [dm6]	G	T	2.565e^-4	0.919	INTERGENIC
2L	5758251	2L_5758251_SNP [dm3] 2L_5758251_SNP [dm6]	C	A	2.567e^-4	0.919	INTRON CG11030
3L	14392067	3L_14392067_SNP [dm3] 3L_14398967_SNP [dm6]	T	A	2.572e^-4	0.919	INTERGENIC
3R	15213950	3R_15213950_SNP [dm3] 3R_19388228_SNP [dm6]	G	A	2.572e^-4	0.919	DOWNSTREAM CR34285 INTRON Ino80 & 1 other	TF binding site mE1_TFBS_sens
3L	8213453	3L_8213453_SNP [dm3] 3L_8220353_SNP [dm6]	T	G	2.578e^-4	0.919	INTERGENIC
3L	7156753	3L_7156753_SNP [dm3] 3L_7163653_SNP [dm6]	G	A	2.578e^-4	0.919	INTRON Dscam2
3L	7156769	3L_7156769_SNP [dm3] 3L_7163669_SNP [dm6]	G	A	2.578e^-4	0.919	INTRON Dscam2
3R	17345631	3R_17345631_SNP [dm3] 3R_21519909_SNP [dm6]	T	A	2.585e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	14489459	3L_14489459_SNP [dm3] 3L_14496359_SNP [dm6]	G	C	2.587e^-4	0.919	INTRON bbg	TF binding site mE1_TFBS_cad
X	6058687	X_6058687_SNP [dm3] X_6164654_SNP [dm6]	A	G	2.590e^-4	0.919	INTRON Ca-alpha1T
3R	22211626	3R_22211626_SNP [dm3] 3R_26385904_SNP [dm6]	C	T	2.593e^-4	0.919	INTERGENIC
3L	712388	3L_712388_DEL [dm3] 3L_712388_DEL [dm6]	AAT	A	2.607e^-4	0.919	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	16442154	X_16442154_SNP [dm3] X_16548121_SNP [dm6]	A	C	2.624e^-4	0.919	UPSTREAM CG9902 DOWNSTREAM Arp2 INTERGENIC	transposable element FlyBase
2L	14749130	2L_14749130_SNP [dm3] 2L_14749130_SNP [dm6]	G	A	2.637e^-4	0.919	INTERGENIC
3R	24362223	3R_24362223_SNP [dm3] 3R_28536501_SNP [dm6]	C	T	2.657e^-4	0.919	INTRON Ppn
3L	712385	3L_712385_DEL [dm3] 3L_712385_DEL [dm6]	TA	T	2.664e^-4	0.919	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	3136990	X_3136990_SNP [dm3] X_3242957_SNP [dm6]	A	G	2.672e^-4	0.919	UPSTREAM ng3 DOWNSTREAM ng1 & 1 other INTRON dnc
2R	11573498	2R_11573498_SNP [dm3] 2R_15685993_SNP [dm6]	A	T	2.676e^-4	0.919	SYNONYMOUS_CODING CG30082 INTRON Ranbp11
X	16344746	X_16344746_SNP [dm3] X_16450713_SNP [dm6]	A	T	2.680e^-4	0.919	INTRON Rbp2
3L	14489497	3L_14489497_SNP [dm3] 3L_14496397_SNP [dm6]	T	A	2.698e^-4	0.919	INTRON bbg	TF binding site mE1_TFBS_cad
3L	10697089	3L_10697089_INS [dm3] 3L_10703989_INS [dm6]	A	AGAAAGA	2.702e^-4	0.919	INTERGENIC
2L	7701038	2L_7701038_SNP [dm3] 2L_7701038_SNP [dm6]	A	C	2.714e^-4	0.919	INTRON Tep2	TF binding site mE1_TFBS_Trl
2L	5454279	2L_5454279_SNP [dm3] 2L_5454279_SNP [dm6]	T	G	2.715e^-4	0.919	INTERGENIC
2R	11576600	2R_11576600_SNP [dm3] 2R_15689095_SNP [dm6]	G	T	2.717e^-4	0.919	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	17455708	3R_17455708_SNP [dm3] 3R_21629986_SNP [dm6]	G	T	2.719e^-4	0.919	INTRON E2f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	9487588	2L_9487588_SNP [dm3] 2L_9487588_SNP [dm6]	A	G	2.719e^-4	0.919	INTERGENIC
2R	15697740	2R_15697740_SNP [dm3] 2R_19810235_SNP [dm6]	T	G	2.721e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4545925	3L_4545925_SNP [dm3] 3L_4545925_SNP [dm6]	C	A	2.734e^-4	0.919	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	20264995	3R_20264995_SNP [dm3] 3R_24439273_SNP [dm6]	C	A	2.744e^-4	0.919	UPSTREAM CR43455 INTRON nAChRalpha1
3R	14351051	3R_14351051_SNP [dm3] 3R_18525329_SNP [dm6]	G	A	2.752e^-4	0.919	INTRON fru	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	13251119	2R_13251119_SNP [dm3] 2R_17363614_SNP [dm6]	T	C	2.757e^-4	0.919	SYNONYMOUS_CODING mbl INTRON mbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5826894	X_5826894_INS [dm3] X_5932861_INS [dm6]	T	TT	2.762e^-4	0.919	INTRON CG3726
3R	2652829	3R_2652829_SNP [dm3] 3R_6827107_SNP [dm6]	A	T	2.776e^-4	0.919	INTRON Scr	regulatory region REDfly_CRMs
3L	11927532	3L_11927532_SNP [dm3] 3L_11934432_SNP [dm6]	G	T	2.785e^-4	0.919	SYNONYMOUS_CODING byn INTRON CG44837	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14541160	3L_14541160_SNP [dm3] 3L_14548060_SNP [dm6]	T	C	2.785e^-4	0.919	INTRON CG9238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8556612	3L_8556612_SNP [dm3] 3L_8563512_SNP [dm6]	C	G	2.787e^-4	0.919	INTRON rhea
3L	22200488	3L_22200488_INS [dm3] 3L_22207388_INS [dm6]	T	TT	2.790e^-4	0.919	INTRON olf413
X	16443965	X_16443965_SNP [dm3] X_16549932_SNP [dm6]	G	A	2.798e^-4	0.919	INTRON Arp2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20218412	X_20218412_SNP [dm3] X_20347385_SNP [dm6]	T	A	2.801e^-4	0.919	INTERGENIC
3L	10755115	3L_10755115_SNP [dm3] 3L_10762015_SNP [dm6]	C	T	2.816e^-4	0.919	INTERGENIC
3L	14197969	3L_14197969_SNP [dm3] 3L_14204869_SNP [dm6]	C	T	2.823e^-4	0.919	UPSTREAM nuf DOWNSTREAM CG32141 INTRON nuf	TF binding site BDTNP1_TFBS_dl
3L	14197970	3L_14197970_SNP [dm3] 3L_14204870_SNP [dm6]	C	T	2.823e^-4	0.919	UPSTREAM nuf DOWNSTREAM CG32141 INTRON nuf	TF binding site BDTNP1_TFBS_dl
3L	12310548	3L_12310548_SNP [dm3] 3L_12317448_SNP [dm6]	T	G	2.831e^-4	0.919	INTERGENIC
2L	2389910	2L_2389910_SNP [dm3] 2L_2389910_SNP [dm6]	A	G	2.836e^-4	0.919	SYNONYMOUS_CODING CG43750
3L	15618926	3L_15618926_SNP [dm3] 3L_15625826_SNP [dm6]	G	T	2.836e^-4	0.919	INTRON comm3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	18478605	3R_18478605_SNP [dm3] 3R_22652883_SNP [dm6]	T	A	2.839e^-4	0.919	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	712322	3L_712322_SNP [dm3] 3L_712322_SNP [dm6]	A	G	2.839e^-4	0.919	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	19480177	2L_19480177_SNP [dm3] 2L_19480177_SNP [dm6]	A	G	2.839e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	12432863	X_12432863_SNP [dm3] X_12538830_SNP [dm6]	T	G	2.842e^-4	0.919	INTRON CG43921
2L	5454299	2L_5454299_SNP [dm3] 2L_5454299_SNP [dm6]	T	G	2.843e^-4	0.919	INTERGENIC
2R	13505970	2R_13505970_SNP [dm3] 2R_17618465_SNP [dm6]	C	A	2.849e^-4	0.919	UPSTREAM CG44403 INTRON CG10936
X	11309234	X_11309234_SNP [dm3] X_11415201_SNP [dm6]	C	T	2.854e^-4	0.919	SYNONYMOUS_CODING Gr10a DOWNSTREAM Or10a	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	20924804	3L_20924804_SNP [dm3] 3L_20931704_SNP [dm6]	T	C	2.872e^-4	0.919	INTRON fng	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20191493	2R_20191493_SNP [dm3] 2R_24303970_SNP [dm6]	G	A	2.873e^-4	0.919	INTERGENIC	regulatory region REDfly_CRMs
X	20215352	X_20215352_INS [dm3] X_20344325_INS [dm6]	A	AGTTGGACAGTCGGACA...	2.873e^-4	0.919	INTERGENIC	transposable element FlyBase
2R	11849772	2R_11849772_SNP [dm3] 2R_15962267_SNP [dm6]	G	A	2.874e^-4	0.919	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4817350	3L_4817350_SNP [dm3] 3L_4817350_SNP [dm6]	G	A	2.902e^-4	0.919	SYNONYMOUS_CODING Dhc64C
2R	12509619	2R_12509619_SNP [dm3] 2R_16622114_SNP [dm6]	C	G	2.909e^-4	0.919	SYNONYMOUS_CODING CG5065	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	12960117	X_12960117_SNP [dm3] X_13066084_SNP [dm6]	A	G	2.910e^-4	0.919	INTRON rad
3R	5121977	3R_5121977_SNP [dm3] 3R_9296255_SNP [dm6]	A	T	2.916e^-4	0.919	INTRON CG8861
2L	10432968	2L_10432968_SNP [dm3] 2L_10432968_SNP [dm6]	T	A	2.931e^-4	0.919	UTR_3_PRIME TfIIB & 1 other DOWNSTREAM TfIIB	TF binding site mE1_TFBS_cad
2R	5234040	2R_5234040_SNP [dm3] 2R_9346535_SNP [dm6]	T	C	2.942e^-4	0.919	INTRON CG13954 & 2 others	TF binding site mE1_TFBS_chinmo
2R	6214866	2R_6214866_SNP [dm3] 2R_10327361_SNP [dm6]	G	A	2.942e^-4	0.919	INTRON CG42732
X	2778438	X_2778438_SNP [dm3] X_2884405_SNP [dm6]	G	T	2.942e^-4	0.919	UPSTREAM CG14418 DOWNSTREAM CG14419 INTRON kirre
3R	14118597	3R_14118597_INS [dm3] 3R_18292875_INS [dm6]	T	TT	2.963e^-4	0.919	UPSTREAM l_3_05822 INTRON l_3_05822	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7358010	3R_7358010_SNP [dm3] 3R_11532288_SNP [dm6]	C	A	2.964e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4736899	3L_4736899_SNP [dm3] 3L_4736899_SNP [dm6]	G	A	2.968e^-4	0.919	INTRON RhoGEF64C
3L	6820476	3L_6820476_SNP [dm3] 3L_6827376_SNP [dm6]	C	T	2.970e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10306613	3R_10306613_SNP [dm3] 3R_14480891_SNP [dm6]	C	T	2.973e^-4	0.919	UTR_5_PRIME cv-c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	4137915	X_4137915_SNP [dm3] X_4243882_SNP [dm6]	A	C	2.980e^-4	0.919	DOWNSTREAM Muc4B INTERGENIC
2R	13931615	2R_13931615_SNP [dm3] 2R_18044110_SNP [dm6]	G	A	2.980e^-4	0.919	UTR_3_PRIME CG5770 UPSTREAM CG5773
3L	9983616	3L_9983616_SNP [dm3] 3L_9990516_SNP [dm6]	T	A	2.981e^-4	0.919	INTRON dpr6
3R	2867864	3R_2867864_SNP [dm3] 3R_7042142_SNP [dm6]	A	C	2.995e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8700476	2L_8700476_SNP [dm3] 2L_8700476_SNP [dm6]	C	T	2.996e^-4	0.919	UPSTREAM Hnf4 INTRON Hnf4
X	2690048	X_2690048_SNP [dm3] X_2796015_SNP [dm6]	A	C	3.003e^-4	0.919	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	20218360	X_20218360_SNP [dm3] X_20347333_SNP [dm6]	C	A	3.003e^-4	0.919	INTERGENIC
2L	10059728	2L_10059728_SNP [dm3] 2L_10059728_SNP [dm6]	C	T	3.020e^-4	0.919	UTR_3_PRIME Pen	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8448676	2L_8448676_SNP [dm3] 2L_8448676_SNP [dm6]	G	T	3.029e^-4	0.919	SYNONYMOUS_CODING U26
3L	415143	3L_415143_DEL [dm3] 3L_415143_DEL [dm6]	AA	A	3.034e^-4	0.919	INTERGENIC
3L	9177943	3L_9177943_SNP [dm3] 3L_9184843_SNP [dm6]	A	C	3.035e^-4	0.919	INTERGENIC
X	3138744	X_3138744_SNP [dm3] X_3244711_SNP [dm6]	T	A	3.039e^-4	0.919	UPSTREAM ng4 INTRON dnc
3L	15234226	3L_15234226_DEL [dm3] 3L_15241126_DEL [dm6]	TTTATTTT	T	3.042e^-4	0.919	UTR_3_PRIME Tollo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14925605	3L_14925605_SNP [dm3] 3L_14932505_SNP [dm6]	T	G	3.047e^-4	0.919	INTRON DCX-EMAP
3L	1010439	3L_1010439_SNP [dm3] 3L_1010439_SNP [dm6]	A	G	3.063e^-4	0.919	INTRON trio
2L	8705405	2L_8705405_SNP [dm3] 2L_8705405_SNP [dm6]	T	A	3.068e^-4	0.919	UPSTREAM CG9314 INTRON Hnf4 EXON CR44992	TF binding site mE1_TFBS_HSA
3R	6105638	3R_6105638_DEL [dm3] 3R_10279916_DEL [dm6]	ATGACTCCA	A	3.078e^-4	0.919	INTRON CG43143
2L	9330266	2L_9330266_SNP [dm3] 2L_9330266_SNP [dm6]	T	C	3.082e^-4	0.919	UTR_3_PRIME CG17005 UPSTREAM Cks30A DOWNSTREAM CG17005	TF binding site mE1_TFBS_HSA
X	12021044	X_12021044_INS [dm3] X_12127011_INS [dm6]	T	TT	3.093e^-4	0.919	INTRON Ten-a
3L	14489486	3L_14489486_SNP [dm3] 3L_14496386_SNP [dm6]	A	C	3.098e^-4	0.919	INTRON bbg	TF binding site mE1_TFBS_cad
3L	14489495	3L_14489495_SNP [dm3] 3L_14496395_SNP [dm6]	G	A	3.098e^-4	0.919	INTRON bbg	TF binding site mE1_TFBS_cad
3R	21991489	3R_21991489_SNP [dm3] 3R_26165767_SNP [dm6]	A	T	3.105e^-4	0.919	INTERGENIC
3R	18401920	3R_18401920_SNP [dm3] 3R_22576198_SNP [dm6]	T	G	3.106e^-4	0.919	INTRON CG33110
3L	17217720	3L_17217720_SNP [dm3] 3L_17224620_SNP [dm6]	A	G	3.110e^-4	0.919	INTRON Rbp6
3L	12147000	3L_12147000_SNP [dm3] 3L_12153900_SNP [dm6]	C	T	3.115e^-4	0.919	INTRON Nrx-IV
3R	10122626	3R_10122626_SNP [dm3] 3R_14296904_SNP [dm6]	G	A	3.116e^-4	0.919	INTRON CG12207
3R	10122629	3R_10122629_SNP [dm3] 3R_14296907_SNP [dm6]	T	C	3.116e^-4	0.919	INTRON CG12207
2R	13682125	2R_13682125_SNP [dm3] 2R_17794620_SNP [dm6]	A	G	3.117e^-4	0.919	INTRON Dhit	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	6253307	3R_6253307_SNP [dm3] 3R_10427585_SNP [dm6]	G	T	3.137e^-4	0.919	INTERGENIC
3R	13600157	3R_13600157_SNP [dm3] 3R_17774435_SNP [dm6]	T	G	3.138e^-4	0.919	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3R	20273581	3R_20273581_SNP [dm3] 3R_24447859_SNP [dm6]	C	T	3.146e^-4	0.919	INTRON nAChRalpha1
2R	16965216	2R_16965216_SNP [dm3] 2R_21077711_SNP [dm6]	A	C	3.153e^-4	0.919	INTRON Treh
3L	536533	3L_536533_SNP [dm3] 3L_536533_SNP [dm6]	A	G	3.163e^-4	0.919	INTRON klar
3L	3143837	3L_3143837_SNP [dm3] 3L_3143837_SNP [dm6]	G	C	3.168e^-4	0.919	UTR_5_PRIME CG1291 UPSTREAM CG11537	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	8448106	2L_8448106_SNP [dm3] 2L_8448106_SNP [dm6]	G	A	3.187e^-4	0.919	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19981500	2L_19981500_SNP [dm3] 2L_19981500_SNP [dm6]	C	A	3.197e^-4	0.919	INTRON CG43861
X	5290172	X_5290172_SNP [dm3] X_5396139_SNP [dm6]	G	A	3.201e^-4	0.919	INTRON SK
2R	19024800	2R_19024800_SNP [dm3] 2R_23137277_SNP [dm6]	G	A	3.205e^-4	0.919	INTERGENIC
3L	712337	3L_712337_SNP [dm3] 3L_712337_SNP [dm6]	G	T	3.222e^-4	0.919	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	10264877	3L_10264877_SNP [dm3] 3L_10271777_SNP [dm6]	G	A	3.229e^-4	0.919	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	743013	3L_743013_SNP [dm3] 3L_743013_SNP [dm6]	G	A	3.230e^-4	0.919	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	25128515	3R_25128515_SNP [dm3] 3R_29302793_SNP [dm6]	T	C	3.236e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	510256	2L_510256_SNP [dm3] 2L_510256_SNP [dm6]	A	C	3.242e^-4	0.919	INTRON ush	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	18641597	3L_18641597_DEL [dm3] 3L_18648497_DEL [dm6]	AACACA	GGGTT	3.257e^-4	0.919	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8161846	2R_8161846_SNP [dm3] 2R_12274341_SNP [dm6]	A	T	3.259e^-4	0.919	UTR_3_PRIME Cam DOWNSTREAM Cam
3L	7257565	3L_7257565_SNP [dm3] 3L_7264465_SNP [dm6]	C	T	3.267e^-4	0.919	UPSTREAM CG14830 INTERGENIC
2L	17289541	2L_17289541_SNP [dm3] 2L_17289541_SNP [dm6]	C	T	3.273e^-4	0.919	INTERGENIC
2R	19127138	2R_19127138_SNP [dm3] 2R_23239615_SNP [dm6]	A	G	3.278e^-4	0.919	INTERGENIC
3L	312104	3L_312104_SNP [dm3] 3L_312104_SNP [dm6]	C	T	3.278e^-4	0.919	UPSTREAM fwd INTRON fwd	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	20493645	X_20493645_SNP [dm3] X_20622618_SNP [dm6]	C	T	3.283e^-4	0.919	INTRON RunxA
2L	8338676	2L_8338676_SNP [dm3] 2L_8338676_SNP [dm6]	A	G	3.287e^-4	0.919	INTRON CG14274
3L	9508978	3L_9508978_SNP [dm3] 3L_9515878_SNP [dm6]	A	T	3.289e^-4	0.919	INTRON CG33700
2L	18871891	2L_18871891_SNP [dm3] 2L_18871891_SNP [dm6]	A	G	3.293e^-4	0.919	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14925731	3L_14925731_MNP [dm3] 3L_14932631_MNP [dm6]	TGTA	ATGG	3.297e^-4	0.919	INTRON DCX-EMAP
2L	19715538	2L_19715538_SNP [dm3] 2L_19715538_SNP [dm6]	T	A	3.301e^-4	0.919	INTRON Lar	TF binding site BDTNP1_TFBS_sna
3L	20731678	3L_20731678_SNP [dm3] 3L_20738578_SNP [dm6]	C	A	3.302e^-4	0.919	NON_SYNONYMOUS_CODING Gr77a INTRON CG13252
2L	5454328	2L_5454328_SNP [dm3] 2L_5454328_SNP [dm6]	A	T	3.305e^-4	0.919	INTERGENIC
3L	16336798	3L_16336798_INS [dm3] 3L_16343698_INS [dm6]	T	TGCCATTAGGAAA...	3.309e^-4	0.919	INTRON CG4998	TF binding site mE1_TFBS_cad
2L	8450856	2L_8450856_SNP [dm3] 2L_8450856_SNP [dm6]	A	C	3.312e^-4	0.919	SYNONYMOUS_CODING fu12
2L	16239804	2L_16239804_SNP [dm3] 2L_16239804_SNP [dm6]	C	T	3.313e^-4	0.919	INTRON CG42817
2R	9457526	2R_9457526_SNP [dm3] 2R_13570021_SNP [dm6]	C	G	3.315e^-4	0.919	DOWNSTREAM CG42807 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2R	19719350	2R_19719350_SNP [dm3] 2R_23831827_SNP [dm6]	T	G	3.316e^-4	0.919	INTRON CG5549
2R	8894184	2R_8894184_SNP [dm3] 2R_13006679_SNP [dm6]	G	A	3.318e^-4	0.919	UTR_3_PRIME Su_z_2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13242737	2R_13242737_SNP [dm3] 2R_17355232_SNP [dm6]	C	T	3.321e^-4	0.919	INTRON mbl
X	3137949	X_3137949_INS [dm3] X_3243916_INS [dm6]	A	AAAGATA	3.324e^-4	0.919	DOWNSTREAM ng1 & 1 other INTRON dnc
2L	4147795	2L_4147795_SNP [dm3] 2L_4147795_SNP [dm6]	G	C	3.326e^-4	0.919	INTERGENIC
3L	15206488	3L_15206488_SNP [dm3] 3L_15213388_SNP [dm6]	G	T	3.330e^-4	0.919	INTERGENIC
2L	13040085	2L_13040085_SNP [dm3] 2L_13040085_SNP [dm6]	T	C	3.338e^-4	0.919	INTRON CG9932
3L	14816604	3L_14816604_SNP [dm3] 3L_14823504_SNP [dm6]	A	G	3.338e^-4	0.919	INTRON CG17839
2L	7341240	2L_7341240_SNP [dm3] 2L_7341240_SNP [dm6]	T	C	3.338e^-4	0.919	INTRON Wnt6	TF binding site mE1_TFBS_sbb
3R	11982358	3R_11982358_SNP [dm3] 3R_16156636_SNP [dm6]	A	G	3.356e^-4	0.919	INTRON CG6006
X	8222268	X_8222268_SNP [dm3] X_8328235_SNP [dm6]	A	T	3.360e^-4	0.919	INTRON nAChRalpha3
3R	10811112	3R_10811112_SNP [dm3] 3R_14985390_SNP [dm6]	T	C	3.361e^-4	0.919	INTERGENIC
3L	10699904	3L_10699904_INS [dm3] 3L_10706804_INS [dm6]	A	AA	3.362e^-4	0.919	INTERGENIC
3L	1570824	3L_1570824_SNP [dm3] 3L_1570824_SNP [dm6]	T	C	3.370e^-4	0.919	INTRON CG12004	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	20316793	2R_20316793_SNP [dm3] 2R_24429270_SNP [dm6]	C	T	3.375e^-4	0.919	UPSTREAM prom DOWNSTREAM CG15873 INTERGENIC
3L	10694292	3L_10694292_SNP [dm3] 3L_10701192_SNP [dm6]	G	C	3.386e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12633063	2R_12633063_SNP [dm3] 2R_16745558_SNP [dm6]	G	A	3.394e^-4	0.919	UTR_3_PRIME CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad
3L	7721787	3L_7721787_SNP [dm3] 3L_7728687_SNP [dm6]	A	G	3.405e^-4	0.919	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
3R	10507897	3R_10507897_SNP [dm3] 3R_14682175_SNP [dm6]	G	C	3.412e^-4	0.919	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	18478641	3R_18478641_SNP [dm3] 3R_22652919_SNP [dm6]	G	T	3.415e^-4	0.919	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15090507	2L_15090507_SNP [dm3] 2L_15090507_SNP [dm6]	T	C	3.431e^-4	0.919	INTRON CG15270
3L	3995214	3L_3995214_SNP [dm3] 3L_3995214_SNP [dm6]	T	G	3.434e^-4	0.919	INTERGENIC
2R	16932411	2R_16932411_SNP [dm3] 2R_21044906_SNP [dm6]	A	G	3.447e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	11791042	3L_11791042_SNP [dm3] 3L_11797942_SNP [dm6]	A	G	3.452e^-4	0.919	SYNONYMOUS_CODING Klp68D	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18696664	2R_18696664_SNP [dm3] 2R_22809159_SNP [dm6]	G	A	3.453e^-4	0.919	INTRON stl
2R	18696665	2R_18696665_SNP [dm3] 2R_22809160_SNP [dm6]	C	T	3.453e^-4	0.919	INTRON stl
2L	3290070	2L_3290070_SNP [dm3] 2L_3290070_SNP [dm6]	T	G	3.454e^-4	0.919	INTERGENIC
3R	1931150	3R_1931150_INS [dm3] 3R_6105428_INS [dm6]	G	GCAATTACATCCAGCTCACA...	3.455e^-4	0.919	UPSTREAM CR44929 INTERGENIC	regulatory region REDfly_CRMs
3R	19952735	3R_19952735_SNP [dm3] 3R_24127013_SNP [dm6]	T	A	3.455e^-4	0.919	NON_SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad
3R	12486718	3R_12486718_SNP [dm3] 3R_16660996_SNP [dm6]	C	T	3.458e^-4	0.919	INTRON Ubx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7257564	3L_7257564_SNP [dm3] 3L_7264464_SNP [dm6]	C	T	3.462e^-4	0.919	UPSTREAM CG14830 INTERGENIC
X	5691157	X_5691157_DEL [dm3] X_5797124_DEL [dm6]	GCAAATGG	G	3.471e^-4	0.919	INTERGENIC
3R	21900094	3R_21900094_SNP [dm3] 3R_26074372_SNP [dm6]	T	A	3.480e^-4	0.919	INTERGENIC
2R	16923365	2R_16923365_SNP [dm3] 2R_21035860_SNP [dm6]	C	G	3.484e^-4	0.919	INTERGENIC
2L	12415255	2L_12415255_SNP [dm3] 2L_12415255_SNP [dm6]	A	T	3.484e^-4	0.919	INTRON vir-1
2L	2916551	2L_2916551_SNP [dm3] 2L_2916551_SNP [dm6]	A	G	3.495e^-4	0.919	INTRON lilli
X	16151446	X_16151446_SNP [dm3] X_16257413_SNP [dm6]	C	T	3.496e^-4	0.919	INTERGENIC
2L	4934000	2L_4934000_SNP [dm3] 2L_4934000_SNP [dm6]	A	T	3.513e^-4	0.919	INTRON hoe2
2R	13242811	2R_13242811_SNP [dm3] 2R_17355306_SNP [dm6]	T	A	3.519e^-4	0.919	INTRON mbl
2L	9430498	2L_9430498_SNP [dm3] 2L_9430498_SNP [dm6]	T	A	3.528e^-4	0.919	UPSTREAM FucTB & 1 other INTRON FucTB
3L	8041754	3L_8041754_SNP [dm3] 3L_8048654_SNP [dm6]	T	C	3.528e^-4	0.919	INTRON nmo
3R	5847134	3R_5847134_SNP [dm3] 3R_10021412_SNP [dm6]	A	T	3.538e^-4	0.919	START_GAINED Mical UTR_5_PRIME Mical INTRON Mical	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21879086	2L_21879086_SNP [dm3] 2L_21879086_SNP [dm6]	C	G	3.548e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19553962	2R_19553962_SNP [dm3] 2R_23666439_SNP [dm6]	G	A	3.548e^-4	0.919	UPSTREAM Pde8 INTRON Pde8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8213457	3L_8213457_SNP [dm3] 3L_8220357_SNP [dm6]	T	C	3.548e^-4	0.919	INTERGENIC
2L	8447795	2L_8447795_SNP [dm3] 2L_8447795_SNP [dm6]	C	T	3.554e^-4	0.919	SYNONYMOUS_CODING U26 UTR_3_PRIME U26
3R	19382195	3R_19382195_DEL [dm3] 3R_23556473_DEL [dm6]	AA	A	3.559e^-4	0.919	UTR_5_PRIME CG10164 UPSTREAM beat-IV
X	9127794	X_9127794_SNP [dm3] X_9233761_SNP [dm6]	C	G	3.562e^-4	0.919	SYNONYMOUS_CODING Ir8a	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11770797	3R_11770797_SNP [dm3] 3R_15945075_SNP [dm6]	C	G	3.567e^-4	0.919	INTRON Sap47
2L	21851919	2L_21851919_INS [dm3] 2L_21851919_INS [dm6]	T	TTCT	3.578e^-4	0.919	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	14219218	2R_14219218_DEL [dm3] 2R_18331713_DEL [dm6]	AGGAAACCCCAATAGA...	A	3.578e^-4	0.919	INTRON sbb	TF binding site mE1_TFBS_inv
2L	3932381	2L_3932381_SNP [dm3] 2L_3932381_SNP [dm6]	T	C	3.587e^-4	0.919	INTRON fred
X	4137954	X_4137954_SNP [dm3] X_4243921_SNP [dm6]	A	T	3.589e^-4	0.919	DOWNSTREAM Muc4B INTERGENIC
2R	13931549	2R_13931549_SNP [dm3] 2R_18044044_SNP [dm6]	A	C	3.597e^-4	0.919	UPSTREAM CG5773 DOWNSTREAM CG5770 INTERGENIC
3R	8480553	3R_8480553_SNP [dm3] 3R_12654831_SNP [dm6]	T	C	3.610e^-4	0.919	UTR_5_PRIME CG6225 INTRON CG6225	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7197934	2L_7197934_SNP [dm3] 2L_7197934_SNP [dm6]	A	G	3.611e^-4	0.919	INTRON CG4502
2L	5287062	2L_5287062_SNP [dm3] 2L_5287062_SNP [dm6]	A	G	3.628e^-4	0.919	UPSTREAM CR44742 DOWNSTREAM CR44743 INTERGENIC
3R	20489370	3R_20489370_SNP [dm3] 3R_24663648_SNP [dm6]	G	T	3.634e^-4	0.919	INTRON slo	regulatory region REDfly_CRMs
X	5440005	X_5440005_SNP [dm3] X_5545972_SNP [dm6]	G	A	3.649e^-4	0.919	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	11756760	X_11756760_SNP [dm3] X_11862727_SNP [dm6]	C	T	3.651e^-4	0.919	SYNONYMOUS_CODING ATP7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19564911	2R_19564911_SNP [dm3] 2R_23677388_SNP [dm6]	T	A	3.657e^-4	0.919	INTRON Pde8	TF binding site mE1_TFBS_cad
X	3376671	X_3376671_SNP [dm3] X_3482638_SNP [dm6]	G	A	3.657e^-4	0.919	UPSTREAM CG10802 & 1 other INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	5145048	3R_5145048_SNP [dm3] 3R_9319326_SNP [dm6]	G	A	3.659e^-4	0.919	INTRON CG8861
2L	441144	2L_441144_SNP [dm3] 2L_441144_SNP [dm6]	C	G	3.667e^-4	0.919	INTRON ex	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	15192354	2L_15192354_SNP [dm3] 2L_15192354_SNP [dm6]	C	T	3.668e^-4	0.919	INTRON CG4168
2R	13242775	2R_13242775_SNP [dm3] 2R_17355270_SNP [dm6]	A	C	3.687e^-4	0.919	INTRON mbl
2R	9940463	2R_9940463_SNP [dm3] 2R_14052958_SNP [dm6]	G	C	3.689e^-4	0.919	INTRON mam
2L	10082295	2L_10082295_SNP [dm3] 2L_10082295_SNP [dm6]	C	T	3.710e^-4	0.919	INTRON CG44153	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12504233	3R_12504233_SNP [dm3] 3R_16678511_SNP [dm6]	A	G	3.720e^-4	0.919	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	10694223	3L_10694223_SNP [dm3] 3L_10701123_SNP [dm6]	C	A	3.722e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2279895	2L_2279895_SNP [dm3] 2L_2279895_SNP [dm6]	G	A	3.725e^-4	0.919	UPSTREAM CR43753 INTERGENIC
X	10117732	X_10117732_INS [dm3] X_10223699_INS [dm6]	T	TCTTT	3.726e^-4	0.919	INTRON CG34408
3L	20739982	3L_20739982_SNP [dm3] 3L_20746882_SNP [dm6]	C	T	3.729e^-4	0.919	INTERGENIC
2L	17783670	2L_17783670_SNP [dm3] 2L_17783670_SNP [dm6]	G	T	3.739e^-4	0.919	INTERGENIC	transposable element FlyBase
3R	19300089	3R_19300089_SNP [dm3] 3R_23474367_SNP [dm6]	G	A	3.744e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_inv
3L	712348	3L_712348_SNP [dm3] 3L_712348_SNP [dm6]	G	T	3.747e^-4	0.919	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	22018071	3R_22018071_SNP [dm3] 3R_26192349_SNP [dm6]	A	T	3.750e^-4	0.919	INTERGENIC
X	11320928	X_11320928_MNP [dm3] X_11426895_MNP [dm6]	GCGG	TTTT	3.762e^-4	0.919	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11320932	X_11320932_INS [dm3] X_11426899_INS [dm6]	A	AAT	3.762e^-4	0.919	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2348672	3L_2348672_SNP [dm3] 3L_2348672_SNP [dm6]	T	C	3.763e^-4	0.919	INTERGENIC
3L	2348676	3L_2348676_SNP [dm3] 3L_2348676_SNP [dm6]	C	T	3.763e^-4	0.919	INTERGENIC
3L	15413476	3L_15413476_SNP [dm3] 3L_15420376_SNP [dm6]	T	C	3.766e^-4	0.919	INTERGENIC
3R	12566228	3R_12566228_SNP [dm3] 3R_16740506_SNP [dm6]	G	A	3.766e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
X	17893254	X_17893254_SNP [dm3] X_17999221_SNP [dm6]	G	A	3.771e^-4	0.919	INTRON Sh
X	21923143	X_21923143_SNP [dm3] X_22521307_SNP [dm6]	C	T	3.773e^-4	0.919	INTRON CG17600
3L	20737662	3L_20737662_SNP [dm3] 3L_20744562_SNP [dm6]	G	C	3.780e^-4	0.919	DOWNSTREAM CG13252 INTERGENIC
3L	12287379	3L_12287379_SNP [dm3] 3L_12294279_SNP [dm6]	T	A	3.782e^-4	0.919	INTRON CG4328
2R	14665267	2R_14665267_SNP [dm3] 2R_18777762_SNP [dm6]	C	T	3.783e^-4	0.919	UPSTREAM CG15093 DOWNSTREAM CR43964 INTERGENIC
3L	14437847	3L_14437847_SNP [dm3] 3L_14444747_SNP [dm6]	T	C	3.788e^-4	0.919	INTRON bbg	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	8292927	X_8292927_SNP [dm3] X_8398894_SNP [dm6]	T	C	3.792e^-4	0.919	UPSTREAM CG10555 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16036484	3L_16036484_SNP [dm3] 3L_16043384_SNP [dm6]	T	A	3.797e^-4	0.919	UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Stat92E mE1_TFBS_Trl
2R	10382797	2R_10382797_SNP [dm3] 2R_14495292_SNP [dm6]	A	G	3.799e^-4	0.919	SYNONYMOUS_CODING L	TF binding site mE1_TFBS_cad
2R	17945007	2R_17945007_SNP [dm3] 2R_22057502_SNP [dm6]	T	C	3.799e^-4	0.919	SYNONYMOUS_CODING CG13500	TF binding site mE1_TFBS_cad
3R	6105630	3R_6105630_SNP [dm3] 3R_10279908_SNP [dm6]	T	A	3.804e^-4	0.919	INTRON CG43143
2R	16294795	2R_16294795_SNP [dm3] 2R_20407290_SNP [dm6]	G	T	3.805e^-4	0.919	INTERGENIC
2L	7302587	2L_7302587_SNP [dm3] 2L_7302587_SNP [dm6]	T	C	3.806e^-4	0.919	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	16763582	2L_16763582_SNP [dm3] 2L_16763582_SNP [dm6]	G	T	3.809e^-4	0.919	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20750078	3L_20750078_INS [dm3] 3L_20756978_INS [dm6]	G	GTG	3.811e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	21076783	2R_21076783_SNP [dm3] 2R_25189260_SNP [dm6]	G	A	3.815e^-4	0.919	UPSTREAM CG9380 INTRON CG9380	transposable element FlyBase
2R	12821148	2R_12821148_SNP [dm3] 2R_16933643_SNP [dm6]	C	T	3.815e^-4	0.919	INTRON Pkc53E	TF binding site BDTNP1_TFBS_twi
X	6058643	X_6058643_SNP [dm3] X_6164610_SNP [dm6]	C	A	3.819e^-4	0.919	INTRON Ca-alpha1T
X	14157477	X_14157477_SNP [dm3] X_14263444_SNP [dm6]	A	G	3.822e^-4	0.919	SPLICE_SITE_REGION CG1461 INTRON CG1461
2L	4424530	2L_4424530_SNP [dm3] 2L_4424530_SNP [dm6]	G	C	3.827e^-4	0.919	INTRON CG15431
2R	16287733	2R_16287733_DEL [dm3] 2R_20400228_DEL [dm6]	GA	G	3.834e^-4	0.919	INTERGENIC
3L	16202369	3L_16202369_SNP [dm3] 3L_16209269_SNP [dm6]	G	A	3.834e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_cad
3L	14694738	3L_14694738_SNP [dm3] 3L_14701638_SNP [dm6]	A	G	3.839e^-4	0.919	NON_SYNONYMOUS_CODING CG17177 INTRON ome
3R	6299585	3R_6299585_SNP [dm3] 3R_10473863_SNP [dm6]	G	T	3.867e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	2993671	3L_2993671_SNP [dm3] 3L_2993671_SNP [dm6]	A	G	3.883e^-4	0.919	INTERGENIC
3L	7257545	3L_7257545_SNP [dm3] 3L_7264445_SNP [dm6]	T	A	3.887e^-4	0.919	UPSTREAM CG14830 INTERGENIC
2L	5456944	2L_5456944_SNP [dm3] 2L_5456944_SNP [dm6]	G	A	3.888e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12383420	3R_12383420_SNP [dm3] 3R_16557698_SNP [dm6]	G	C	3.890e^-4	0.919	INTRON CG42342
3R	25405876	3R_25405876_SNP [dm3] 3R_29580154_SNP [dm6]	A	G	3.892e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	8136809	2R_8136809_SNP [dm3] 2R_12249304_SNP [dm6]	G	T	3.898e^-4	0.919	INTERGENIC
2L	10488099	2L_10488099_SNP [dm3] 2L_10488099_SNP [dm6]	A	G	3.903e^-4	0.919	SYNONYMOUS_CODING CG7456 UPSTREAM CG6144	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7339406	2L_7339406_SNP [dm3] 2L_7339406_SNP [dm6]	C	T	3.903e^-4	0.919	INTRON Wnt6
2L	11246038	2L_11246038_SNP [dm3] 2L_11246038_SNP [dm6]	A	T	3.906e^-4	0.919	INTRON ab	TF binding site mE1_TFBS_chinmo
2L	4142228	2L_4142228_SNP [dm3] 2L_4142228_SNP [dm6]	C	T	3.906e^-4	0.919	INTERGENIC
2L	8450997	2L_8450997_SNP [dm3] 2L_8450997_SNP [dm6]	T	A	3.907e^-4	0.919	UTR_5_PRIME fu12
3R	11464759	3R_11464759_SNP [dm3] 3R_15639037_SNP [dm6]	C	T	3.908e^-4	0.919	DOWNSTREAM CG43336 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	14678576	2R_14678576_SNP [dm3] 2R_18791071_SNP [dm6]	C	A	3.912e^-4	0.919	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20211873	2R_20211873_SNP [dm3] 2R_24324350_SNP [dm6]	G	A	3.914e^-4	0.919	UPSTREAM CR44810 INTERGENIC
2R	17920187	2R_17920187_SNP [dm3] 2R_22032682_SNP [dm6]	G	T	3.917e^-4	0.919	INTRON CG34370
2L	4291057	2L_4291057_SNP [dm3] 2L_4291057_SNP [dm6]	C	T	3.929e^-4	0.919	INTRON tutl
X	5441251	X_5441251_SNP [dm3] X_5547218_SNP [dm6]	C	G	3.936e^-4	0.919	INTRON Vsx2	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	712323	3L_712323_SNP [dm3] 3L_712323_SNP [dm6]	T	A	3.938e^-4	0.919	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	16340634	2R_16340634_SNP [dm3] 2R_20453129_SNP [dm6]	A	G	3.941e^-4	0.919	INTRON CG12484
X	9814806	X_9814806_DEL [dm3] X_9920773_DEL [dm6]	TT	T	3.941e^-4	0.919	INTERGENIC
3L	4737896	3L_4737896_SNP [dm3] 3L_4737896_SNP [dm6]	G	A	3.951e^-4	0.919	INTRON RhoGEF64C
3L	18998179	3L_18998179_SNP [dm3] 3L_19005079_SNP [dm6]	G	A	3.967e^-4	0.919	SYNONYMOUS_CODING nkd UTR_3_PRIME nkd	TF binding site mE1_TFBS_chinmo
2L	19977028	2L_19977028_SNP [dm3] 2L_19977028_SNP [dm6]	G	A	3.967e^-4	0.919	INTRON CG43861
2R	11598183	2R_11598183_SNP [dm3] 2R_15710678_SNP [dm6]	A	G	3.970e^-4	0.919	DOWNSTREAM CG30083 INTERGENIC
2L	20128377	2L_20128377_SNP [dm3] 2L_20128377_SNP [dm6]	C	T	3.978e^-4	0.919	INTERGENIC
2L	10825534	2L_10825534_SNP [dm3] 2L_10825534_SNP [dm6]	T	A	3.994e^-4	0.919	INTRON Nos
2L	853650	2L_853650_SNP [dm3] 2L_853650_SNP [dm6]	C	T	3.994e^-4	0.919	NON_SYNONYMOUS_CODING kraken UPSTREAM CG4291	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6820520	3L_6820520_DEL [dm3] 3L_6827420_DEL [dm6]	TGCCCCG	T	4.002e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	4501903	2R_4501903_SNP [dm3] 2R_8614398_SNP [dm6]	G	A	4.005e^-4	0.919	UPSTREAM Cirl & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_inv
2L	10086054	2L_10086054_SNP [dm3] 2L_10086054_SNP [dm6]	T	C	4.011e^-4	0.919	INTRON CG44153
3L	14421477	3L_14421477_SNP [dm3] 3L_14428377_SNP [dm6]	G	A	4.012e^-4	0.919	UPSTREAM bbg INTRON bbg
2L	7356644	2L_7356644_SNP [dm3] 2L_7356644_SNP [dm6]	C	T	4.016e^-4	0.919	INTERGENIC
3R	4138430	3R_4138430_SNP [dm3] 3R_8312708_SNP [dm6]	A	T	4.016e^-4	0.919	SYNONYMOUS_CODING CG11698 UPSTREAM CG11694 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo
3L	10693458	3L_10693458_SNP [dm3] 3L_10700358_SNP [dm6]	A	C	4.023e^-4	0.919	INTERGENIC
2L	21906528	2L_21906528_SNP [dm3] 2L_21906528_SNP [dm6]	A	G	4.036e^-4	0.919	NON_SYNONYMOUS_CODING CG1428	TF binding site mE1_TFBS_cad
3R	23980754	3R_23980754_SNP [dm3] 3R_28155032_SNP [dm6]	A	G	4.041e^-4	0.919	INTRON CG34354	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	16824644	3L_16824644_SNP [dm3] 3L_16831544_SNP [dm6]	A	G	4.053e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_inv
2L	1860931	2L_1860931_SNP [dm3] 2L_1860931_SNP [dm6]	G	T	4.059e^-4	0.919	INTRON CG31663
3L	712384	3L_712384_SNP [dm3] 3L_712384_SNP [dm6]	T	C	4.060e^-4	0.919	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	16447003	2L_16447003_DEL [dm3] 2L_16447003_DEL [dm6]	CTTT	GG	4.064e^-4	0.919	UPSTREAM Idgf2 DOWNSTREAM Idgf1 INTRON CG5888
3L	22312914	3L_22312914_SNP [dm3] 3L_22319814_SNP [dm6]	C	A	4.074e^-4	0.919	INTRON Ten-m	TF binding site mE1_TFBS_inv
3L	2646310	3L_2646310_SNP [dm3] 3L_2646310_SNP [dm6]	T	C	4.076e^-4	0.919	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12322172	3R_12322172_SNP [dm3] 3R_16496450_SNP [dm6]	A	T	4.081e^-4	0.919	INTERGENIC
3R	21990600	3R_21990600_SNP [dm3] 3R_26164878_SNP [dm6]	G	T	4.096e^-4	0.919	INTERGENIC
2R	16422361	2R_16422361_SNP [dm3] 2R_20534856_SNP [dm6]	C	T	4.105e^-4	0.919	SYNONYMOUS_CODING CG18067 DOWNSTREAM CG30154
2L	21921535	2L_21921535_SNP [dm3] 2L_21921535_SNP [dm6]	T	C	4.108e^-4	0.919	INTERGENIC
3L	10829004	3L_10829004_SNP [dm3] 3L_10835904_SNP [dm6]	C	T	4.115e^-4	0.919	INTERGENIC
3R	21824571	3R_21824571_SNP [dm3] 3R_25998849_SNP [dm6]	T	A	4.120e^-4	0.919	DOWNSTREAM E_spl_mdelta-HLH INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	7300717	2L_7300717_SNP [dm3] 2L_7300717_SNP [dm6]	C	T	4.123e^-4	0.919	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	14033562	X_14033562_SNP [dm3] X_14139529_SNP [dm6]	T	A	4.125e^-4	0.919	INTERGENIC
3L	20809588	3L_20809588_SNP [dm3] 3L_20816488_SNP [dm6]	G	A	4.126e^-4	0.919	UTR_5_PRIME Pka-R1 UPSTREAM CG3618 DOWNSTREAM Mst77F INTRON Pka-R1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2003548	X_2003548_SNP [dm3] X_2109515_SNP [dm6]	A	G	4.126e^-4	0.919	SYNONYMOUS_CODING csw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3265694	2R_3265694_SNP [dm3] 2R_7378189_SNP [dm6]	C	T	4.131e^-4	0.919	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
2L	14705832	2L_14705832_SNP [dm3] 2L_14705832_SNP [dm6]	G	C	4.133e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	10122627	3R_10122627_SNP [dm3] 3R_14296905_SNP [dm6]	A	T	4.141e^-4	0.919	INTRON CG12207
3L	13272867	3L_13272867_SNP [dm3] 3L_13279767_SNP [dm6]	A	G	4.145e^-4	0.919	UPSTREAM tRNA:CR32123:Psi DOWNSTREAM caps INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	24672410	3R_24672410_SNP [dm3] 3R_28846688_SNP [dm6]	C	T	4.151e^-4	0.919	INTRON spg	TF binding site BDTNP1_TFBS_dl
2L	17083499	2L_17083499_DEL [dm3] 2L_17083499_DEL [dm6]	TTT	T	4.151e^-4	0.919	INTERGENIC
2L	8704103	2L_8704103_SNP [dm3] 2L_8704103_SNP [dm6]	C	T	4.152e^-4	0.919	INTRON Hnf4 EXON CR44992
3L	14929523	3L_14929523_SNP [dm3] 3L_14936423_SNP [dm6]	T	A	4.153e^-4	0.919	INTRON DCX-EMAP
2R	3261299	2R_3261299_DEL [dm3] 2R_7373794_DEL [dm6]	TGAAT	T	4.156e^-4	0.919	INTRON Dscam1	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14057292	3L_14057292_SNP [dm3] 3L_14064192_SNP [dm6]	C	T	4.165e^-4	0.919	INTRON CG32138	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	9147038	2R_9147038_SNP [dm3] 2R_13259533_SNP [dm6]	G	A	4.166e^-4	0.919	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2L	2008323	2L_2008323_SNP [dm3] 2L_2008323_SNP [dm6]	T	A	4.170e^-4	0.919	UPSTREAM Nplp4 & 1 other DOWNSTREAM CR45712 INTERGENIC	TF binding site mE1_TFBS_cad
2L	17305797	2L_17305797_SNP [dm3] 2L_17305797_SNP [dm6]	A	G	4.177e^-4	0.919	INTERGENIC
2L	4145109	2L_4145109_SNP [dm3] 2L_4145109_SNP [dm6]	A	G	4.186e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14273385	2R_14273385_SNP [dm3] 2R_18385880_SNP [dm6]	T	C	4.205e^-4	0.919	UPSTREAM CG15067 & 1 other DOWNSTREAM CG18107 INTERGENIC
2L	19963003	2L_19963003_SNP [dm3] 2L_19963003_SNP [dm6]	G	C	4.226e^-4	0.919	NON_SYNONYMOUS_CODING CG16772 UPSTREAM CG13965
2R	3978907	2R_3978907_SNP [dm3] 2R_8091402_SNP [dm6]	T	A	4.228e^-4	0.919	UPSTREAM CG8713 DOWNSTREAM sut3 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	14678507	2R_14678507_SNP [dm3] 2R_18791002_SNP [dm6]	G	A	4.230e^-4	0.919	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	20901759	3L_20901759_SNP [dm3] 3L_20908659_SNP [dm6]	T	C	4.234e^-4	0.919	INTERGENIC
2R	13250768	2R_13250768_SNP [dm3] 2R_17363263_SNP [dm6]	T	C	4.236e^-4	0.919	SYNONYMOUS_CODING mbl INTRON mbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21824582	3R_21824582_SNP [dm3] 3R_25998860_SNP [dm6]	T	C	4.239e^-4	0.919	UPSTREAM E_spl_mgamma-HLH DOWNSTREAM E_spl_mdelta-HLH INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3R	25212391	3R_25212391_SNP [dm3] 3R_29386669_SNP [dm6]	C	T	4.241e^-4	0.919	INTRON Ptp99A	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
2L	1676992	2L_1676992_SNP [dm3] 2L_1676992_SNP [dm6]	A	T	4.243e^-4	0.919	INTRON chinmo
3R	22615421	3R_22615421_SNP [dm3] 3R_26789699_SNP [dm6]	T	A	4.248e^-4	0.919	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	6489864	X_6489864_SNP [dm3] X_6595831_SNP [dm6]	G	C	4.249e^-4	0.919	UTR_3_PRIME Pat1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	14190581	X_14190581_INS [dm3] X_14296548_INS [dm6]	T	TCT	4.250e^-4	0.919	INTERGENIC
3L	10969436	3L_10969436_SNP [dm3] 3L_10976336_SNP [dm6]	A	T	4.254e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_cad
2R	9147155	2R_9147155_SNP [dm3] 2R_13259650_SNP [dm6]	A	T	4.258e^-4	0.919	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2L	11518184	2L_11518184_SNP [dm3] 2L_11518184_SNP [dm6]	G	A	4.265e^-4	0.919	SYNONYMOUS_CODING CG4970	TF binding site mE1_TFBS_sens
2R	19564919	2R_19564919_SNP [dm3] 2R_23677396_SNP [dm6]	C	G	4.271e^-4	0.919	INTRON Pde8	TF binding site mE1_TFBS_cad
3R	21876295	3R_21876295_SNP [dm3] 3R_26050573_SNP [dm6]	T	C	4.274e^-4	0.919	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2311636	X_2311636_SNP [dm3] X_2417603_SNP [dm6]	A	T	4.275e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_sens
2L	4142210	2L_4142210_SNP [dm3] 2L_4142210_SNP [dm6]	G	A	4.282e^-4	0.919	INTERGENIC
X	20215452	X_20215452_INS [dm3] X_20344425_INS [dm6]	AC	TTATGCCG	4.285e^-4	0.919	INTERGENIC
3L	13272747	3L_13272747_SNP [dm3] 3L_13279647_SNP [dm6]	G	A	4.289e^-4	0.919	UPSTREAM tRNA:CR32123:Psi DOWNSTREAM caps INTERGENIC
2R	3077646	2R_3077646_SNP [dm3] 2R_7190141_SNP [dm6]	T	G	4.302e^-4	0.919	INTRON pk
3L	14154826	3L_14154826_SNP [dm3] 3L_14161726_SNP [dm6]	T	G	4.316e^-4	0.919	INTERGENIC	regulatory region REDfly_CRMs
2L	4697388	2L_4697388_SNP [dm3] 2L_4697388_SNP [dm6]	C	A	4.318e^-4	0.919	INTRON CG34351
2R	3692346	2R_3692346_SNP [dm3] 2R_7804841_SNP [dm6]	G	A	4.322e^-4	0.919	START_GAINED Nop17l UTR_5_PRIME Nop17l	TF binding site mE1_TFBS_cad
2L	12415091	2L_12415091_SNP [dm3] 2L_12415091_SNP [dm6]	A	G	4.323e^-4	0.919	INTRON vir-1
2R	4956241	2R_4956241_SNP [dm3] 2R_9068736_SNP [dm6]	T	G	4.326e^-4	0.919	UPSTREAM ana INTRON ana
X	6643082	X_6643082_INS [dm3] X_6749049_INS [dm6]	A	AACAGAGA	4.339e^-4	0.919	INTRON CG14439
2L	19079217	2L_19079217_SNP [dm3] 2L_19079217_SNP [dm6]	A	T	4.340e^-4	0.919	UPSTREAM CG10700 DOWNSTREAM Lim3 INTERGENIC
2L	13925786	2L_13925786_SNP [dm3] 2L_13925786_SNP [dm6]	A	T	4.350e^-4	0.919	INTRON Ance-3
3L	11599845	3L_11599845_SNP [dm3] 3L_11606745_SNP [dm6]	T	C	4.350e^-4	0.919	SYNONYMOUS_CODING CG6091
3L	7736595	3L_7736595_SNP [dm3] 3L_7743495_SNP [dm6]	C	T	4.373e^-4	0.919	UPSTREAM Snmp2 INTRON CG32373
2L	7337556	2L_7337556_SNP [dm3] 2L_7337556_SNP [dm6]	C	T	4.378e^-4	0.919	INTRON Wnt6
2L	21780606	2L_21780606_DEL [dm3] 2L_21780606_DEL [dm6]	CTT	C	4.380e^-4	0.919	INTRON CG31612	TF binding site BDTNP1_TFBS_twi
X	1196886	X_1196886_SNP [dm3] X_1302853_SNP [dm6]	T	C	4.386e^-4	0.919	INTRON DAAM	TF binding site mE1_TFBS_chinmo
2L	9851017	2L_9851017_SNP [dm3] 2L_9851017_SNP [dm6]	T	G	4.387e^-4	0.919	INTRON nAChRalpha6
3L	18641613	3L_18641613_SNP [dm3] 3L_18648513_SNP [dm6]	A	T	4.390e^-4	0.919	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12077068	3R_12077068_SNP [dm3] 3R_16251346_SNP [dm6]	G	A	4.401e^-4	0.919	INTRON tara	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5845184	3L_5845184_SNP [dm3] 3L_5852084_SNP [dm6]	A	C	4.401e^-4	0.919	INTERGENIC
3L	20179123	3L_20179123_SNP [dm3] 3L_20186023_SNP [dm6]	T	A	4.402e^-4	0.919	UPSTREAM CG42674 INTRON CG42674	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	18486575	2L_18486575_SNP [dm3] 2L_18486575_SNP [dm6]	C	T	4.403e^-4	0.919	INTRON CG10176	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20273584	3R_20273584_SNP [dm3] 3R_24447862_SNP [dm6]	G	C	4.405e^-4	0.919	INTRON nAChRalpha1
2R	5234047	2R_5234047_SNP [dm3] 2R_9346542_SNP [dm6]	G	C	4.406e^-4	0.919	INTRON CG13954 & 2 others	TF binding site mE1_TFBS_chinmo
3R	4400876	3R_4400876_INS [dm3] 3R_8575154_INS [dm6]	T	TT	4.413e^-4	0.919	INTERGENIC
3L	9040814	3L_9040814_SNP [dm3] 3L_9047714_SNP [dm6]	C	A	4.418e^-4	0.919	SYNONYMOUS_CODING CG5144	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sens
3R	26671686	3R_26671686_SNP [dm3] 3R_30845964_SNP [dm6]	T	A	4.429e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	12264143	X_12264143_SNP [dm3] X_12370110_SNP [dm6]	C	A	4.434e^-4	0.919	INTERGENIC
2L	9153038	2L_9153038_SNP [dm3] 2L_9153038_SNP [dm6]	A	G	4.435e^-4	0.919	INTRON CG32982
2R	9147438	2R_9147438_SNP [dm3] 2R_13259933_SNP [dm6]	G	A	4.440e^-4	0.919	UPSTREAM CG42319 INTERGENIC
2L	721661	2L_721661_DEL [dm3] 2L_721661_DEL [dm6]	CTATTCTGC	C	4.440e^-4	0.919	INTERGENIC
2R	18344349	2R_18344349_SNP [dm3] 2R_22456844_SNP [dm6]	T	G	4.450e^-4	0.919	INTRON CG10384
3R	14344614	3R_14344614_SNP [dm3] 3R_18518892_SNP [dm6]	T	A	4.454e^-4	0.919	INTRON fru
2R	19553902	2R_19553902_SNP [dm3] 2R_23666379_SNP [dm6]	G	C	4.456e^-4	0.919	UPSTREAM Pde8 INTRON Pde8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1903361	3L_1903361_SNP [dm3] 3L_1903361_SNP [dm6]	A	C	4.457e^-4	0.919	INTRON CG1887
X	5742546	X_5742546_SNP [dm3] X_5848513_SNP [dm6]	T	C	4.461e^-4	0.919	INTERGENIC
3L	20731856	3L_20731856_SNP [dm3] 3L_20738756_SNP [dm6]	C	G	4.466e^-4	0.919	NON_SYNONYMOUS_CODING Gr77a INTRON CG13252	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19898638	2L_19898638_SNP [dm3] 2L_19898638_SNP [dm6]	G	A	4.466e^-4	0.919	INTRON sick
2L	16758440	2L_16758440_SNP [dm3] 2L_16758440_SNP [dm6]	T	G	4.491e^-4	0.919	SYNONYMOUS_CODING ppk17 DOWNSTREAM yellow-b
3R	6050546	3R_6050546_SNP [dm3] 3R_10224824_SNP [dm6]	A	G	4.492e^-4	0.919	UPSTREAM CG34107 & 2 others INTERGENIC
2L	18863618	2L_18863618_SNP [dm3] 2L_18863618_SNP [dm6]	A	G	4.494e^-4	0.919	INTRON tup
X	4262977	X_4262977_SNP [dm3] X_4368944_SNP [dm6]	T	C	4.496e^-4	0.919	SYNONYMOUS_CODING CG3626 UPSTREAM mir-983-1 & 2 others EXON CR43614	TF binding site mE1_TFBS_HSA
3L	263411	3L_263411_SNP [dm3] 3L_263411_SNP [dm6]	G	T	4.507e^-4	0.919	INTRON Tudor-SN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_sens
2R	7107070	2R_7107070_SNP [dm3] 2R_11219565_SNP [dm6]	T	C	4.507e^-4	0.919	UTR_5_PRIME Syx6 UPSTREAM Syx6 & 1 other INTRON CG9084	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	13913708	2L_13913708_DEL [dm3] 2L_13913708_DEL [dm6]	GGTT	G	4.509e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_cad
X	6262240	X_6262240_SNP [dm3] X_6368207_SNP [dm6]	C	T	4.509e^-4	0.919	INTRON Marf	TF binding site mE1_TFBS_sens
3L	22332078	3L_22332078_SNP [dm3] 3L_22338978_SNP [dm6]	C	T	4.516e^-4	0.919	INTRON Ten-m	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5810038	X_5810038_SNP [dm3] X_5916005_SNP [dm6]	T	C	4.523e^-4	0.919	UPSTREAM CG3011 INTRON CG3011
X	4137976	X_4137976_SNP [dm3] X_4243943_SNP [dm6]	G	C	4.525e^-4	0.919	DOWNSTREAM Muc4B INTERGENIC
2R	703261	2R_703261_SNP [dm3] 2R_4815756_SNP [dm6]	G	A	4.530e^-4	0.919	UTR_3_PRIME CG17528
2L	11686657	2L_11686657_SNP [dm3] 2L_11686657_SNP [dm6]	T	C	4.533e^-4	0.919	INTERGENIC
3R	8274107	3R_8274107_SNP [dm3] 3R_12448385_SNP [dm6]	G	A	4.541e^-4	0.919	NON_SYNONYMOUS_CODING CG5538 UPSTREAM CG18549 DOWNSTREAM Desat1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17034560	3R_17034560_SNP [dm3] 3R_21208838_SNP [dm6]	T	C	4.549e^-4	0.919	INTRON SNF4Agamma
X	16443966	X_16443966_SNP [dm3] X_16549933_SNP [dm6]	T	C	4.552e^-4	0.919	INTRON Arp2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17138834	2L_17138834_DEL [dm3] 2L_17138834_DEL [dm6]	AA	A	4.561e^-4	0.919	INTRON beat-IIIa & 1 other
3R	13600041	3R_13600041_SNP [dm3] 3R_17774319_SNP [dm6]	C	T	4.562e^-4	0.919	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3L	14376180	3L_14376180_SNP [dm3] 3L_14383080_SNP [dm6]	C	T	4.574e^-4	0.919	UTR_3_PRIME CG43120
X	7064106	X_7064106_SNP [dm3] X_7170073_SNP [dm6]	A	T	4.576e^-4	0.919	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3L	7721793	3L_7721793_SNP [dm3] 3L_7728693_SNP [dm6]	A	T	4.582e^-4	0.919	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
2R	7407831	2R_7407831_SNP [dm3] 2R_11520326_SNP [dm6]	A	T	4.582e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_cad
3L	18152745	3L_18152745_SNP [dm3] 3L_18159645_SNP [dm6]	G	A	4.583e^-4	0.919	INTRON CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	743084	3L_743084_INS [dm3] 3L_743084_INS [dm6]	T	TT	4.586e^-4	0.919	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	2798022	2L_2798022_SNP [dm3] 2L_2798022_SNP [dm6]	A	T	4.587e^-4	0.919	INTRON Syt1 EXON CR43821	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	10832550	2L_10832550_SNP [dm3] 2L_10832550_SNP [dm6]	A	G	4.592e^-4	0.919	INTRON Nos
3R	16889961	3R_16889961_SNP [dm3] 3R_21064239_SNP [dm6]	A	G	4.600e^-4	0.919	INTRON Cortactin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	17261024	2L_17261024_SNP [dm3] 2L_17261024_SNP [dm6]	G	C	4.614e^-4	0.919	UPSTREAM beat-IIIc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
X	6058670	X_6058670_SNP [dm3] X_6164637_SNP [dm6]	A	T	4.614e^-4	0.919	INTRON Ca-alpha1T
3L	12146627	3L_12146627_SNP [dm3] 3L_12153527_SNP [dm6]	T	C	4.616e^-4	0.919	SYNONYMOUS_CODING Nrx-IV
2R	16723021	2R_16723021_DEL [dm3] 2R_20835516_DEL [dm6]	ACA	A	4.619e^-4	0.919	INTRON insc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	16553993	2L_16553993_SNP [dm3] 2L_16553993_SNP [dm6]	G	C	4.627e^-4	0.919	INTRON CG42389
3L	18152735	3L_18152735_SNP [dm3] 3L_18159635_SNP [dm6]	A	G	4.627e^-4	0.919	INTRON CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11530467	2R_11530467_SNP [dm3] 2R_15642962_SNP [dm6]	T	A	4.636e^-4	0.919	INTRON CG42524
2L	18930447	2L_18930447_SNP [dm3] 2L_18930447_SNP [dm6]	G	A	4.647e^-4	0.919	INTRON ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16442415	3L_16442415_SNP [dm3] 3L_16449315_SNP [dm6]	C	T	4.658e^-4	0.919	INTRON CG33158 & 1 other
2L	9053262	2L_9053262_SNP [dm3] 2L_9053262_SNP [dm6]	T	A	4.660e^-4	0.919	INTRON CG31708
2L	19079203	2L_19079203_SNP [dm3] 2L_19079203_SNP [dm6]	C	T	4.662e^-4	0.919	UPSTREAM CG10700 DOWNSTREAM Lim3 INTERGENIC
3L	2587500	3L_2587500_INS [dm3] 3L_2587500_INS [dm6]	A	AA	4.667e^-4	0.919	UTR_5_PRIME RpL8 UPSTREAM msn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	1046273	2L_1046273_SNP [dm3] 2L_1046273_SNP [dm6]	G	A	4.668e^-4	0.919	INTRON IA-2
3R	17348414	3R_17348414_SNP [dm3] 3R_21522692_SNP [dm6]	C	T	4.671e^-4	0.919	INTRON CG7956
2L	9103236	2L_9103236_SNP [dm3] 2L_9103236_SNP [dm6]	C	T	4.673e^-4	0.919	INTERGENIC
3R	14189921	3R_14189921_DEL [dm3] 3R_18364199_DEL [dm6]	CTCCAAC	C	4.697e^-4	0.919	UTR_3_PRIME CG7669 DOWNSTREAM WRNexo
X	6258888	X_6258888_SNP [dm3] X_6364855_SNP [dm6]	A	C	4.702e^-4	0.919	SYNONYMOUS_CODING swa	TF binding site mE1_TFBS_chinmo
X	6058499	X_6058499_SNP [dm3] X_6164466_SNP [dm6]	A	G	4.703e^-4	0.919	SPLICE_SITE_REGION Ca-alpha1T INTRON Ca-alpha1T
2R	8824881	2R_8824881_SNP [dm3] 2R_12937376_SNP [dm6]	A	G	4.710e^-4	0.919	UPSTREAM CG13322 DOWNSTREAM CG30487 INTRON Sans	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3L	5845188	3L_5845188_SNP [dm3] 3L_5852088_SNP [dm6]	G	A	4.710e^-4	0.919	INTERGENIC
2L	8740651	2L_8740651_SNP [dm3] 2L_8740651_SNP [dm6]	T	A	4.710e^-4	0.919	UTR_5_PRIME raw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
X	4093930	X_4093930_SNP [dm3] X_4199897_SNP [dm6]	T	C	4.711e^-4	0.919	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	11320993	X_11320993_SNP [dm3] X_11426960_SNP [dm6]	G	A	4.720e^-4	0.919	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14190531	X_14190531_SNP [dm3] X_14296498_SNP [dm6]	G	A	4.725e^-4	0.919	INTERGENIC
3R	17877822	3R_17877822_SNP [dm3] 3R_22052100_SNP [dm6]	C	T	4.726e^-4	0.919	INTRON how	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	17783645	2L_17783645_SNP [dm3] 2L_17783645_SNP [dm6]	A	T	4.728e^-4	0.919	INTERGENIC	transposable element FlyBase
3R	25758849	3R_25758849_SNP [dm3] 3R_29933127_SNP [dm6]	T	A	4.741e^-4	0.919	UPSTREAM CG42557 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	14042378	X_14042378_SNP [dm3] X_14148345_SNP [dm6]	T	G	4.743e^-4	0.919	INTERGENIC
X	7110481	X_7110481_SNP [dm3] X_7216448_SNP [dm6]	T	C	4.746e^-4	0.919	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_twi
2R	16862751	2R_16862751_SNP [dm3] 2R_20975246_SNP [dm6]	T	C	4.760e^-4	0.919	UPSTREAM CG34115 INTERGENIC
2R	16861864	2R_16861864_SNP [dm3] 2R_20974359_SNP [dm6]	G	C	4.761e^-4	0.919	UPSTREAM CG15649 INTERGENIC
2L	12415207	2L_12415207_SNP [dm3] 2L_12415207_SNP [dm6]	A	G	4.785e^-4	0.919	INTRON vir-1
3R	26486380	3R_26486380_SNP [dm3] 3R_30660658_SNP [dm6]	A	T	4.789e^-4	0.919	INTERGENIC
2L	1091466	2L_1091466_DEL [dm3] 2L_1091466_DEL [dm6]	AATTAATTAGTTTTTA...	A	4.795e^-4	0.919	INTRON CG4629
3L	15483280	3L_15483280_SNP [dm3] 3L_15490180_SNP [dm6]	T	C	4.803e^-4	0.919	INTERGENIC
3L	6475629	3L_6475629_SNP [dm3] 3L_6482529_SNP [dm6]	T	C	4.808e^-4	0.919	INTRON CG42747	TF binding site mE1_TFBS_inv
3L	711790	3L_711790_SNP [dm3] 3L_711790_SNP [dm6]	A	T	4.810e^-4	0.919	UTR_5_PRIME CG13896	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	10847155	2R_10847155_SNP [dm3] 2R_14959650_SNP [dm6]	G	T	4.818e^-4	0.919	INTRON aPKC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	13505969	2R_13505969_SNP [dm3] 2R_17618464_SNP [dm6]	T	G	4.825e^-4	0.919	UPSTREAM CG44403 INTRON CG10936
3L	11632636	3L_11632636_SNP [dm3] 3L_11639536_SNP [dm6]	A	C	4.826e^-4	0.919	INTRON CG32091
3L	7836670	3L_7836670_SNP [dm3] 3L_7843570_SNP [dm6]	T	C	4.826e^-4	0.919	INTRON Pdp1	regulatory region REDfly_CRMs
3L	13646936	3L_13646936_SNP [dm3] 3L_13653836_SNP [dm6]	T	C	4.838e^-4	0.919	INTRON bru-3
2L	13925848	2L_13925848_DEL [dm3] 2L_13925848_DEL [dm6]	GACCGT	G	4.839e^-4	0.919	INTRON Ance-3
3L	519464	3L_519464_SNP [dm3] 3L_519464_SNP [dm6]	C	A	4.859e^-4	0.919	INTRON klar
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	4.860e^-4	0.919	EXON CR44950
3L	14415161	3L_14415161_SNP [dm3] 3L_14422061_SNP [dm6]	G	T	4.874e^-4	0.919	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11320954	X_11320954_SNP [dm3] X_11426921_SNP [dm6]	A	T	4.877e^-4	0.919	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14050808	2R_14050808_SNP [dm3] 2R_18163303_SNP [dm6]	C	T	4.880e^-4	0.919	SYNONYMOUS_CODING CG10915	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	3469610	3R_3469610_SNP [dm3] 3R_7643888_SNP [dm6]	T	G	4.888e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16983323	3L_16983323_SNP [dm3] 3L_16990223_SNP [dm6]	A	G	4.895e^-4	0.919	INTRON Exn
3R	7953305	3R_7953305_DEL [dm3] 3R_12127583_DEL [dm6]	ACATACACTAAG...	A	4.896e^-4	0.919	INTRON CG4702	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	13739276	2R_13739276_SNP [dm3] 2R_17851771_SNP [dm6]	G	A	4.916e^-4	0.919	INTRON olf186-F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
3L	15411450	3L_15411450_SNP [dm3] 3L_15418350_SNP [dm6]	A	T	4.925e^-4	0.919	INTERGENIC
2R	20323109	2R_20323109_SNP [dm3] 2R_24435586_SNP [dm6]	T	C	4.933e^-4	0.919	INTERGENIC
3L	15483252	3L_15483252_SNP [dm3] 3L_15490152_SNP [dm6]	G	T	4.945e^-4	0.919	INTERGENIC
3L	396393	3L_396393_SNP [dm3] 3L_396393_SNP [dm6]	T	C	4.946e^-4	0.919	INTERGENIC
X	21371605	X_21371605_SNP [dm3] X_21500578_SNP [dm6]	T	G	4.946e^-4	0.919	INTRON CR45082
2R	11724952	2R_11724952_SNP [dm3] 2R_15837447_SNP [dm6]	G	A	4.948e^-4	0.919	INTRON tun	regulatory region REDfly_CRMs
3R	11464740	3R_11464740_SNP [dm3] 3R_15639018_SNP [dm6]	T	A	4.954e^-4	0.919	DOWNSTREAM CG43336 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	11464746	3R_11464746_SNP [dm3] 3R_15639024_SNP [dm6]	T	A	4.954e^-4	0.919	DOWNSTREAM CG43336 INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	13349547	2L_13349547_SNP [dm3] 2L_13349547_SNP [dm6]	G	T	4.959e^-4	0.919	DOWNSTREAM CG9395 & 1 other INTERGENIC
2L	14871517	2L_14871517_INS [dm3] 2L_14871517_INS [dm6]	A	AC	4.962e^-4	0.919	INTRON CG4480
3R	6105689	3R_6105689_SNP [dm3] 3R_10279967_SNP [dm6]	G	A	4.964e^-4	0.919	INTRON CG43143
3L	13953220	3L_13953220_SNP [dm3] 3L_13960120_SNP [dm6]	G	A	4.967e^-4	0.919	INTRON CG32137
3L	14816333	3L_14816333_SNP [dm3] 3L_14823233_SNP [dm6]	G	A	4.974e^-4	0.919	INTRON CG17839
3L	7473829	3L_7473829_SNP [dm3] 3L_7480729_SNP [dm6]	C	G	4.974e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_inv
2R	21049630	2R_21049630_SNP [dm3] 2R_25162107_SNP [dm6]	G	A	4.977e^-4	0.919	INTERGENIC
2L	14685940	2L_14685940_SNP [dm3] 2L_14685940_SNP [dm6]	T	A	4.978e^-4	0.919	INTRON osp
2L	9853701	2L_9853701_SNP [dm3] 2L_9853701_SNP [dm6]	C	A	4.982e^-4	0.919	INTRON nAChRalpha6
3L	10694245	3L_10694245_SNP [dm3] 3L_10701145_SNP [dm6]	G	A	4.983e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25036733	3R_25036733_SNP [dm3] 3R_29211011_SNP [dm6]	C	G	4.983e^-4	0.919	INTERGENIC
3R	20264992	3R_20264992_SNP [dm3] 3R_24439270_SNP [dm6]	A	T	4.984e^-4	0.919	UPSTREAM CR43455 INTRON nAChRalpha1
2R	16436501	2R_16436501_SNP [dm3] 2R_20548996_SNP [dm6]	A	G	4.999e^-4	0.919	UPSTREAM Obp57e DOWNSTREAM Cpr57A INTRON Cpr57A & 1 other	regulatory region REDfly_CRMs
X	20215260	X_20215260_SNP [dm3] X_20344233_SNP [dm6]	A	C	5.013e^-4	0.919	INTERGENIC	transposable element FlyBase
X	11756604	X_11756604_SNP [dm3] X_11862571_SNP [dm6]	T	C	5.013e^-4	0.919	SYNONYMOUS_CODING ATP7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27122929	3R_27122929_SNP [dm3] 3R_31297207_SNP [dm6]	C	G	5.019e^-4	0.919	INTERGENIC
2L	18652002	2L_18652002_SNP [dm3] 2L_18652002_SNP [dm6]	A	G	5.022e^-4	0.919	INTRON MESR3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2644480	3R_2644480_INS [dm3] 3R_6818758_INS [dm6]	T	TCATAAATATAAGT...	5.027e^-4	0.919	DOWNSTREAM tRNA:CR31485:Psi INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9685669	3L_9685669_SNP [dm3] 3L_9692569_SNP [dm6]	A	G	5.027e^-4	0.919	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	20347647	3R_20347647_SNP [dm3] 3R_24521925_SNP [dm6]	T	C	5.028e^-4	0.919	UTR_3_PRIME Pp1alpha-96A DOWNSTREAM Pp1alpha-96A & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19992264	2L_19992264_SNP [dm3] 2L_19992264_SNP [dm6]	T	C	5.031e^-4	0.919	INTRON CG43861	TF binding site mE1_TFBS_chinmo
3L	12055410	3L_12055410_SNP [dm3] 3L_12062310_SNP [dm6]	C	T	5.031e^-4	0.919	INTRON rols	TF binding site BDTNP1_TFBS_da
3L	18640244	3L_18640244_SNP [dm3] 3L_18647144_SNP [dm6]	T	G	5.039e^-4	0.919	INTRON MYPT-75D
2L	5409882	2L_5409882_SNP [dm3] 2L_5409882_SNP [dm6]	G	A	5.044e^-4	0.919	INTRON H15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5544938	2L_5544938_SNP [dm3] 2L_5544938_SNP [dm6]	A	T	5.059e^-4	0.919	SYNONYMOUS_CODING Lam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	19024849	2R_19024849_SNP [dm3] 2R_23137326_SNP [dm6]	T	G	5.061e^-4	0.919	INTERGENIC
3R	21364942	3R_21364942_SNP [dm3] 3R_25539220_SNP [dm6]	G	C	5.084e^-4	0.919	INTRON msi	insulator Insulator_Class_II.mE01
3L	14478277	3L_14478277_SNP [dm3] 3L_14485177_SNP [dm6]	T	A	5.088e^-4	0.919	INTRON bbg
2R	19963263	2R_19963263_SNP [dm3] 2R_24075740_SNP [dm6]	A	C	5.089e^-4	0.919	UTR_3_PRIME Mlp60A DOWNSTREAM Mlp60A INTRON Mlp60A
2L	702204	2L_702204_SNP [dm3] 2L_702204_SNP [dm6]	T	C	5.093e^-4	0.919	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2R	12678508	2R_12678508_SNP [dm3] 2R_16791003_SNP [dm6]	T	C	5.100e^-4	0.919	SYNONYMOUS_CODING CG5522	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	25752344	3R_25752344_SNP [dm3] 3R_29926622_SNP [dm6]	T	G	5.103e^-4	0.919	UPSTREAM Jon99Ci & 1 other INTERGENIC
3R	19952709	3R_19952709_SNP [dm3] 3R_24126987_SNP [dm6]	T	C	5.109e^-4	0.919	SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad
3L	741724	3L_741724_INS [dm3] 3L_741724_INS [dm6]	C	CGC	5.109e^-4	0.919	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	9501686	2L_9501686_SNP [dm3] 2L_9501686_SNP [dm6]	G	A	5.120e^-4	0.919	INTRON CG33298
3L	7719725	3L_7719725_SNP [dm3] 3L_7726625_SNP [dm6]	C	T	5.125e^-4	0.919	UPSTREAM CG7457 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16865581	2L_16865581_SNP [dm3] 2L_16865581_SNP [dm6]	T	C	5.126e^-4	0.919	INTERGENIC
3R	10130223	3R_10130223_SNP [dm3] 3R_14304501_SNP [dm6]	T	A	5.129e^-4	0.919	UTR_3_PRIME su_Hw_ DOWNSTREAM CG3259	TF binding site mE1_TFBS_cad
X	32952	X_32952_SNP [dm3] X_136565_SNP [dm6]	G	A	5.130e^-4	0.919	INTRON RhoGAP1A
2R	12078185	2R_12078185_SNP [dm3] 2R_16190680_SNP [dm6]	C	A	5.132e^-4	0.919	NON_SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1103387	3L_1103387_SNP [dm3] 3L_1103387_SNP [dm6]	C	T	5.150e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	5087274	3R_5087274_SNP [dm3] 3R_9261552_SNP [dm6]	C	A	5.154e^-4	0.919	INTRON VhaM8.9	TF binding site mE1_TFBS_HSA
3L	15237131	3L_15237131_SNP [dm3] 3L_15244031_SNP [dm6]	A	C	5.156e^-4	0.919	INTERGENIC
2L	19079235	2L_19079235_SNP [dm3] 2L_19079235_SNP [dm6]	T	C	5.167e^-4	0.919	UPSTREAM CG10700 DOWNSTREAM Lim3 INTERGENIC
2R	13242965	2R_13242965_SNP [dm3] 2R_17355460_SNP [dm6]	A	T	5.178e^-4	0.919	INTRON mbl
3L	20809221	3L_20809221_SNP [dm3] 3L_20816121_SNP [dm6]	T	A	5.179e^-4	0.919	UTR_5_PRIME Pka-R1 UPSTREAM CG3618 DOWNSTREAM Mst77F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	6710006	X_6710006_SNP [dm3] X_6815973_SNP [dm6]	T	C	5.188e^-4	0.919	SPLICE_SITE_REGION iav INTRON iav
2R	12419989	2R_12419989_SNP [dm3] 2R_16532484_SNP [dm6]	C	G	5.210e^-4	0.919	UTR_3_PRIME Sema-2a
2L	22299264	2L_22299264_SNP [dm3] 2L_22299264_SNP [dm6]	G	C	5.211e^-4	0.919	INTERGENIC	transposable element FlyBase
3L	2426726	3L_2426726_INS [dm3] 3L_2426726_INS [dm6]	T	TTTTAATTTTAATTTTAATT...	5.223e^-4	0.919	INTRON CG45186
2R	16286825	2R_16286825_SNP [dm3] 2R_20399320_SNP [dm6]	G	A	5.237e^-4	0.919	INTERGENIC
2R	6795339	2R_6795339_SNP [dm3] 2R_10907834_SNP [dm6]	G	T	5.238e^-4	0.919	INTERGENIC
3L	7257534	3L_7257534_SNP [dm3] 3L_7264434_SNP [dm6]	T	A	5.251e^-4	0.919	UPSTREAM CG14830 INTERGENIC
2L	16723393	2L_16723393_SNP [dm3] 2L_16723393_SNP [dm6]	G	A	5.256e^-4	0.919	UTR_3_PRIME VhaSFD DOWNSTREAM Cyt-c-p
2L	14712767	2L_14712767_SNP [dm3] 2L_14712767_SNP [dm6]	C	T	5.257e^-4	0.919	UPSTREAM CG34165 INTRON CG15282
3L	1692031	3L_1692031_SNP [dm3] 3L_1692031_SNP [dm6]	T	G	5.257e^-4	0.919	INTRON CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6628596	2R_6628596_SNP [dm3] 2R_10741091_SNP [dm6]	A	G	5.266e^-4	0.919	SYNONYMOUS_CODING CG33144	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	12587001	3L_12587001_SNP [dm3] 3L_12593901_SNP [dm6]	A	T	5.268e^-4	0.919	INTRON ara
2L	4141333	2L_4141333_SNP [dm3] 2L_4141333_SNP [dm6]	T	C	5.271e^-4	0.919	INTERGENIC
2R	3674521	2R_3674521_SNP [dm3] 2R_7787016_SNP [dm6]	G	A	5.281e^-4	0.919	DOWNSTREAM mir-4980 INTRON CanB2	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	8699210	2L_8699210_SNP [dm3] 2L_8699210_SNP [dm6]	G	A	5.281e^-4	0.919	UTR_5_PRIME Hnf4 INTRON Hnf4
2R	14678676	2R_14678676_SNP [dm3] 2R_18791171_SNP [dm6]	T	A	5.295e^-4	0.919	NON_SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18271525	3L_18271525_SNP [dm3] 3L_18278425_SNP [dm6]	T	A	5.300e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	2863927	2L_2863927_SNP [dm3] 2L_2863927_SNP [dm6]	C	T	5.300e^-4	0.919	INTRON CG2991	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10471736	2L_10471736_SNP [dm3] 2L_10471736_SNP [dm6]	G	A	5.311e^-4	0.919	SYNONYMOUS_CODING RluA-1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16338175	3L_16338175_SNP [dm3] 3L_16345075_SNP [dm6]	C	T	5.317e^-4	0.919	UTR_3_PRIME CG4998	TF binding site mE1_TFBS_cad
2R	15836747	2R_15836747_SNP [dm3] 2R_19949242_SNP [dm6]	G	T	5.319e^-4	0.919	INTERGENIC
3L	332458	3L_332458_SNP [dm3] 3L_332458_SNP [dm6]	T	C	5.330e^-4	0.919	UPSTREAM mthl9 DOWNSTREAM mthl10 INTRON Ptpmeg	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	4933968	2L_4933968_SNP [dm3] 2L_4933968_SNP [dm6]	G	A	5.339e^-4	0.919	INTRON hoe2
2L	11686631	2L_11686631_DEL [dm3] 2L_11686631_DEL [dm6]	ATTACAGGTAATA...	T	5.346e^-4	0.919	INTERGENIC
2R	11170047	2R_11170047_SNP [dm3] 2R_15282542_SNP [dm6]	T	C	5.348e^-4	0.919	INTRON Trpm
2R	13200879	2R_13200879_SNP [dm3] 2R_17313374_SNP [dm6]	T	G	5.350e^-4	0.919	INTRON mbl
2L	9429672	2L_9429672_SNP [dm3] 2L_9429672_SNP [dm6]	A	G	5.363e^-4	0.919	UTR_5_PRIME FucTB DOWNSTREAM CG42847 INTRON FucTB
X	17515032	X_17515032_SNP [dm3] X_17620999_SNP [dm6]	T	C	5.371e^-4	0.919	INTERGENIC
2R	11467370	2R_11467370_INS [dm3] 2R_15579865_INS [dm6]	A	AAGTGAA	5.376e^-4	0.919	INTERGENIC
2R	4589494	2R_4589494_SNP [dm3] 2R_8701989_SNP [dm6]	C	T	5.380e^-4	0.919	SYNONYMOUS_CODING CG12376 UPSTREAM CG12376 & 1 other
X	14190536	X_14190536_SNP [dm3] X_14296503_SNP [dm6]	A	G	5.380e^-4	0.919	INTERGENIC
3R	12188898	3R_12188898_SNP [dm3] 3R_16363176_SNP [dm6]	G	C	5.386e^-4	0.919	INTRON CG14880
2L	10525649	2L_10525649_SNP [dm3] 2L_10525649_SNP [dm6]	T	C	5.386e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17618385	3L_17618385_SNP [dm3] 3L_17625285_SNP [dm6]	G	C	5.389e^-4	0.919	INTRON CG7510	TF binding site mE1_TFBS_inv

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.572e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.04214

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	7.3935	0.0248

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1839 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	743993	3L_743993_SNP [dm3] 3L_743993_SNP [dm6]	T	C	1.773e^-6	0.978	UPSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16861770	2R_16861770_SNP [dm3] 2R_20974265_SNP [dm6]	T	A	3.863e^-6	0.978	UPSTREAM CG15649 INTERGENIC
3L	7777439	3L_7777439_SNP [dm3] 3L_7784339_SNP [dm6]	C	T	5.617e^-6	0.978	INTRON CG32369
2R	6606992	2R_6606992_SNP [dm3] 2R_10719487_SNP [dm6]	A	T	8.431e^-6	0.978	INTRON stan
3L	12147115	3L_12147115_SNP [dm3] 3L_12154015_SNP [dm6]	T	C	9.465e^-6	0.978	SYNONYMOUS_CODING Nrx-IV
X	6477081	X_6477081_SNP [dm3] X_6583048_SNP [dm6]	G	T	9.510e^-6	0.978	SYNONYMOUS_CODING CG34417 INTRON CG34417
3R	6253276	3R_6253276_SNP [dm3] 3R_10427554_SNP [dm6]	G	A	9.695e^-6	0.978	INTERGENIC
3L	5886015	3L_5886015_SNP [dm3] 3L_5892915_SNP [dm6]	C	G	1.006e^-5	0.978	INTERGENIC
2L	11419352	2L_11419352_SNP [dm3] 2L_11419352_SNP [dm6]	A	G	1.059e^-5	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10756244	3L_10756244_SNP [dm3] 3L_10763144_SNP [dm6]	A	G	1.102e^-5	0.978	INTERGENIC
2L	4364449	2L_4364449_SNP [dm3] 2L_4364449_SNP [dm6]	T	A	1.182e^-5	0.978	UPSTREAM CR45363 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5544938	2L_5544938_SNP [dm3] 2L_5544938_SNP [dm6]	A	T	1.198e^-5	0.978	SYNONYMOUS_CODING Lam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	9131327	2R_9131327_SNP [dm3] 2R_13243822_SNP [dm6]	G	A	1.238e^-5	0.978	DOWNSTREAM CR45278 INTERGENIC
3L	8391972	3L_8391972_SNP [dm3] 3L_8398872_SNP [dm6]	A	T	1.279e^-5	0.978	INTRON CG7120
2R	11251263	2R_11251263_SNP [dm3] 2R_15363758_SNP [dm6]	T	A	1.310e^-5	0.978	INTRON unc-5
3R	8486852	3R_8486852_SNP [dm3] 3R_12661130_SNP [dm6]	C	T	1.336e^-5	0.978	DOWNSTREAM CR45586 & 1 other INTERGENIC
3L	16983394	3L_16983394_SNP [dm3] 3L_16990294_SNP [dm6]	C	A	1.387e^-5	0.978	INTRON Exn
3R	19769710	3R_19769710_SNP [dm3] 3R_23943988_SNP [dm6]	G	A	1.424e^-5	0.978	SYNONYMOUS_CODING CG12268 UPSTREAM Gdh	TF binding site mE1_TFBS_cad
3L	8391974	3L_8391974_SNP [dm3] 3L_8398874_SNP [dm6]	G	A	1.451e^-5	0.978	INTRON CG7120
3L	16983298	3L_16983298_INS [dm3] 3L_16990198_INS [dm6]	A	AG	1.507e^-5	0.978	INTRON Exn
2R	9131300	2R_9131300_SNP [dm3] 2R_13243795_SNP [dm6]	A	T	1.547e^-5	0.978	DOWNSTREAM CR45278 INTERGENIC
3R	20509028	3R_20509028_SNP [dm3] 3R_24683306_SNP [dm6]	T	A	1.582e^-5	0.978	INTRON slo
3R	25760016	3R_25760016_SNP [dm3] 3R_29934294_SNP [dm6]	A	C	1.776e^-5	0.978	NON_SYNONYMOUS_CODING CG42558 UTR_3_PRIME CG42557 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad
X	4865876	X_4865876_DEL [dm3] X_4971843_DEL [dm6]	ATATATATATATATAT...	A	1.827e^-5	0.978	INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	3090995	3L_3090995_SNP [dm3] 3L_3090995_SNP [dm6]	C	T	1.827e^-5	0.978	UTR_3_PRIME Cht7 DOWNSTREAM CG11486 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	25759599	3R_25759599_SNP [dm3] 3R_29933877_SNP [dm6]	C	T	1.948e^-5	0.978	NON_SYNONYMOUS_CODING CG42557 START_GAINED CG42558 UTR_5_PRIME CG42558 UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	742989	3L_742989_SNP [dm3] 3L_742989_SNP [dm6]	C	A	1.984e^-5	0.978	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	9131489	2R_9131489_SNP [dm3] 2R_13243984_SNP [dm6]	G	T	2.050e^-5	0.978	DOWNSTREAM CR45278 INTERGENIC
2R	9131294	2R_9131294_SNP [dm3] 2R_13243789_SNP [dm6]	A	C	2.105e^-5	0.978	DOWNSTREAM CR45278 INTERGENIC
3R	6253307	3R_6253307_SNP [dm3] 3R_10427585_SNP [dm6]	G	T	2.423e^-5	0.978	INTERGENIC
3L	4152861	3L_4152861_SNP [dm3] 3L_4152861_SNP [dm6]	G	A	2.701e^-5	0.978	DOWNSTREAM CG1299 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20860404	2L_20860404_SNP [dm3] 2L_20860404_SNP [dm6]	C	T	2.725e^-5	0.978	INTRON CG9336
X	5826894	X_5826894_INS [dm3] X_5932861_INS [dm6]	T	TT	2.787e^-5	0.978	INTRON CG3726
X	10443026	X_10443026_SNP [dm3] X_10548993_SNP [dm6]	C	T	2.836e^-5	0.978	INTRON spri
X	14756956	X_14756956_SNP [dm3] X_14862923_SNP [dm6]	A	C	2.852e^-5	0.978	DOWNSTREAM CG9518 INTRON Flo2
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	2.856e^-5	0.978	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
2L	3439088	2L_3439088_SNP [dm3] 2L_3439088_SNP [dm6]	T	G	2.925e^-5	0.978	INTERGENIC
2L	4364464	2L_4364464_SNP [dm3] 2L_4364464_SNP [dm6]	C	G	3.022e^-5	0.978	UPSTREAM CR45363 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18871879	2L_18871879_SNP [dm3] 2L_18871879_SNP [dm6]	C	T	3.083e^-5	0.978	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16331071	3L_16331071_SNP [dm3] 3L_16337971_SNP [dm6]	C	A	3.159e^-5	0.978	INTERGENIC
3L	743080	3L_743080_SNP [dm3] 3L_743080_SNP [dm6]	T	A	3.199e^-5	0.978	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	1903336	3L_1903336_SNP [dm3] 3L_1903336_SNP [dm6]	G	A	3.204e^-5	0.978	INTRON CG1887
2R	9131495	2R_9131495_SNP [dm3] 2R_13243990_SNP [dm6]	G	T	3.214e^-5	0.978	DOWNSTREAM CR45278 INTERGENIC
2R	20946369	2R_20946369_SNP [dm3] 2R_25058846_SNP [dm6]	C	T	3.237e^-5	0.978	INTERGENIC	regulatory region FlyBase REDfly_CRMs
2R	9131331	2R_9131331_SNP [dm3] 2R_13243826_SNP [dm6]	A	C	3.296e^-5	0.978	DOWNSTREAM CR45278 INTERGENIC
2R	7045208	2R_7045208_SNP [dm3] 2R_11157703_SNP [dm6]	C	A	3.308e^-5	0.978	INTRON CG13229
3L	14057292	3L_14057292_SNP [dm3] 3L_14064192_SNP [dm6]	C	T	3.446e^-5	0.978	INTRON CG32138	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	12850971	X_12850971_SNP [dm3] X_12956938_SNP [dm6]	G	T	3.510e^-5	0.978	INTRON hec
X	2926031	X_2926031_SNP [dm3] X_3031998_SNP [dm6]	C	A	3.535e^-5	0.978	INTRON kirre
X	14756999	X_14756999_SNP [dm3] X_14862966_SNP [dm6]	A	G	3.677e^-5	0.978	DOWNSTREAM CG9518 INTRON Flo2
2R	20316757	2R_20316757_SNP [dm3] 2R_24429234_SNP [dm6]	A	G	3.915e^-5	0.978	UPSTREAM prom DOWNSTREAM CG15873 INTERGENIC
3L	743033	3L_743033_SNP [dm3] 3L_743033_SNP [dm6]	C	T	3.998e^-5	0.978	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	21160844	X_21160844_SNP [dm3] X_21289817_SNP [dm6]	G	C	4.011e^-5	0.978	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14932148	2R_14932148_DEL [dm3] 2R_19044643_DEL [dm6]	AA	A	4.012e^-5	0.978	INTERGENIC
3L	1352726	3L_1352726_SNP [dm3] 3L_1352726_SNP [dm6]	A	G	4.089e^-5	0.978	UTR_3_PRIME 312 DOWNSTREAM 312 INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3L	2643105	3L_2643105_DEL [dm3] 3L_2643105_DEL [dm6]	TAATAT	T	4.116e^-5	0.978	INTRON CG14949
X	14842540	X_14842540_SNP [dm3] X_14948507_SNP [dm6]	T	C	4.173e^-5	0.978	INTRON pdgy	TF binding site mE1_TFBS_HSA
X	19401744	X_19401744_SNP [dm3] X_19507711_SNP [dm6]	T	C	4.202e^-5	0.978	SYNONYMOUS_CODING Pfrx INTRON CG14200	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14978893	2R_14978893_SNP [dm3] 2R_19091388_SNP [dm6]	C	T	4.325e^-5	0.978	SYNONYMOUS_CODING 5-HT1A
3L	7291341	3L_7291341_DEL [dm3] 3L_7298241_DEL [dm6]	GG	G	4.351e^-5	0.978	INTRON unc-13-4A
3L	12146645	3L_12146645_SNP [dm3] 3L_12153545_SNP [dm6]	T	C	4.363e^-5	0.978	SYNONYMOUS_CODING Nrx-IV
2L	4424389	2L_4424389_SNP [dm3] 2L_4424389_SNP [dm6]	G	A	4.401e^-5	0.978	INTRON CG15431
2R	9131453	2R_9131453_SNP [dm3] 2R_13243948_SNP [dm6]	A	C	4.500e^-5	0.978	DOWNSTREAM CR45278 INTERGENIC
2L	11930045	2L_11930045_SNP [dm3] 2L_11930045_SNP [dm6]	C	T	4.625e^-5	0.978	INTERGENIC
3L	8362346	3L_8362346_SNP [dm3] 3L_8369246_SNP [dm6]	C	T	4.635e^-5	0.978	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	742992	3L_742992_DEL [dm3] 3L_742992_DEL [dm6]	ATGGTTTTTGATAACTAA...	A	4.683e^-5	0.978	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	25758849	3R_25758849_SNP [dm3] 3R_29933127_SNP [dm6]	T	A	4.740e^-5	0.978	UPSTREAM CG42557 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	10925619	2R_10925619_SNP [dm3] 2R_15038114_SNP [dm6]	A	G	4.748e^-5	0.978	INTRON hbs
X	6477066	X_6477066_SNP [dm3] X_6583033_SNP [dm6]	A	G	4.759e^-5	0.978	SYNONYMOUS_CODING CG34417 INTRON CG34417
3L	2644981	3L_2644981_SNP [dm3] 3L_2644981_SNP [dm6]	A	T	4.774e^-5	0.978	UPSTREAM CG1143 INTERGENIC
2R	9147482	2R_9147482_SNP [dm3] 2R_13259977_SNP [dm6]	A	G	4.807e^-5	0.978	UPSTREAM CG42319 INTERGENIC
3L	12147000	3L_12147000_SNP [dm3] 3L_12153900_SNP [dm6]	C	T	4.814e^-5	0.978	INTRON Nrx-IV
X	6216324	X_6216324_SNP [dm3] X_6322291_SNP [dm6]	G	A	5.000e^-5	0.978	INTRON CG15894
3L	4534444	3L_4534444_SNP [dm3] 3L_4534444_SNP [dm6]	C	A	5.069e^-5	0.978	INTRON CG11353
X	12929562	X_12929562_SNP [dm3] X_13035529_SNP [dm6]	T	A	5.090e^-5	0.978	INTRON rad
2L	8986559	2L_8986559_SNP [dm3] 2L_8986559_SNP [dm6]	T	C	5.168e^-5	0.978	INTRON rost
2L	8986560	2L_8986560_SNP [dm3] 2L_8986560_SNP [dm6]	C	A	5.168e^-5	0.978	INTRON rost
3L	15206488	3L_15206488_SNP [dm3] 3L_15213388_SNP [dm6]	G	T	5.172e^-5	0.978	INTERGENIC
3R	5145048	3R_5145048_SNP [dm3] 3R_9319326_SNP [dm6]	G	A	5.183e^-5	0.978	INTRON CG8861
3L	8582618	3L_8582618_SNP [dm3] 3L_8589518_SNP [dm6]	T	C	5.203e^-5	0.978	UPSTREAM CG43078 INTRON CG43078
2L	8167858	2L_8167858_SNP [dm3] 2L_8167858_SNP [dm6]	G	C	5.204e^-5	0.978	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12600147	X_12600147_SNP [dm3] X_12706114_SNP [dm6]	C	A	5.235e^-5	0.978	UTR_5_PRIME CG15725 INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18831086	X_18831086_SNP [dm3] X_18937053_SNP [dm6]	C	G	5.305e^-5	0.978	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11981518	3R_11981518_SNP [dm3] 3R_16155796_SNP [dm6]	G	C	5.352e^-5	0.978	INTRON CG6006	TF binding site mE1_TFBS_cad
2R	9131372	2R_9131372_SNP [dm3] 2R_13243867_SNP [dm6]	T	C	5.388e^-5	0.978	DOWNSTREAM CR45278 INTERGENIC
2R	12821148	2R_12821148_SNP [dm3] 2R_16933643_SNP [dm6]	C	T	5.531e^-5	0.978	INTRON Pkc53E	TF binding site BDTNP1_TFBS_twi
3L	1561196	3L_1561196_SNP [dm3] 3L_1561196_SNP [dm6]	G	T	5.585e^-5	0.978	NON_SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	7291366	3L_7291366_SNP [dm3] 3L_7298266_SNP [dm6]	G	C	5.622e^-5	0.978	INTRON unc-13-4A
2R	11330066	2R_11330066_SNP [dm3] 2R_15442561_SNP [dm6]	G	T	5.693e^-5	0.978	INTRON CG43729
2L	10085825	2L_10085825_SNP [dm3] 2L_10085825_SNP [dm6]	C	T	5.784e^-5	0.978	INTRON CG44153
2R	9131360	2R_9131360_SNP [dm3] 2R_13243855_SNP [dm6]	C	T	5.817e^-5	0.978	DOWNSTREAM CR45278 INTERGENIC
3L	16983323	3L_16983323_SNP [dm3] 3L_16990223_SNP [dm6]	A	G	5.901e^-5	0.978	INTRON Exn
2L	8697403	2L_8697403_SNP [dm3] 2L_8697403_SNP [dm6]	T	G	5.957e^-5	0.978	INTRON Hnf4
2R	19297196	2R_19297196_SNP [dm3] 2R_23409673_SNP [dm6]	C	G	5.998e^-5	0.978	INTERGENIC
3L	1066558	3L_1066558_SNP [dm3] 3L_1066558_SNP [dm6]	C	G	6.024e^-5	0.978	INTRON bab1
3L	1172112	3L_1172112_SNP [dm3] 3L_1172112_SNP [dm6]	C	G	6.112e^-5	0.978	INTRON bab2	regulatory region REDfly_CRMs
X	12190729	X_12190729_SNP [dm3] X_12296696_SNP [dm6]	G	A	6.129e^-5	0.978	INTRON Ten-a
3L	8908321	3L_8908321_SNP [dm3] 3L_8915221_SNP [dm6]	C	T	6.147e^-5	0.978	UPSTREAM CR43970 INTRON Tsp66E
3L	2646310	3L_2646310_SNP [dm3] 3L_2646310_SNP [dm6]	T	C	6.189e^-5	0.978	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9131320	2R_9131320_SNP [dm3] 2R_13243815_SNP [dm6]	T	G	6.251e^-5	0.978	DOWNSTREAM CR45278 INTERGENIC
X	15135604	X_15135604_SNP [dm3] X_15241571_SNP [dm6]	G	T	6.396e^-5	0.978	INTERGENIC
3L	20924804	3L_20924804_SNP [dm3] 3L_20931704_SNP [dm6]	T	C	6.400e^-5	0.978	INTRON fng	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9814806	X_9814806_DEL [dm3] X_9920773_DEL [dm6]	TT	T	6.521e^-5	0.978	INTERGENIC
X	2926734	X_2926734_SNP [dm3] X_3032701_SNP [dm6]	C	A	6.638e^-5	0.978	INTRON kirre
3R	20396321	3R_20396321_SNP [dm3] 3R_24570599_SNP [dm6]	T	A	6.664e^-5	0.978	INTRON CG13624
2L	18871861	2L_18871861_SNP [dm3] 2L_18871861_SNP [dm6]	G	A	6.804e^-5	0.978	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10991562	2R_10991562_SNP [dm3] 2R_15104057_SNP [dm6]	T	A	6.916e^-5	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10264888	3L_10264888_SNP [dm3] 3L_10271788_SNP [dm6]	C	A	6.972e^-5	0.978	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11330036	2R_11330036_SNP [dm3] 2R_15442531_SNP [dm6]	G	C	7.066e^-5	0.978	INTRON CG43729
2R	10991461	2R_10991461_SNP [dm3] 2R_15103956_SNP [dm6]	C	G	7.123e^-5	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	9147422	2R_9147422_SNP [dm3] 2R_13259917_SNP [dm6]	A	T	7.222e^-5	0.978	UPSTREAM CG42319 INTERGENIC
2L	9125310	2L_9125310_SNP [dm3] 2L_9125310_SNP [dm6]	G	A	7.249e^-5	0.978	UPSTREAM CG32982 DOWNSTREAM CR44615 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	18663595	3L_18663595_SNP [dm3] 3L_18670495_SNP [dm6]	T	C	7.328e^-5	0.978	SYNONYMOUS_CODING Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	12021044	X_12021044_INS [dm3] X_12127011_INS [dm6]	T	TT	7.342e^-5	0.978	INTRON Ten-a
3R	27128046	3R_27128046_SNP [dm3] 3R_31302324_SNP [dm6]	C	T	7.345e^-5	0.978	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_inv
3L	743046	3L_743046_SNP [dm3] 3L_743046_SNP [dm6]	A	T	7.361e^-5	0.978	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	18464186	X_18464186_SNP [dm3] X_18570153_SNP [dm6]	C	A	7.400e^-5	0.978	INTRON Bx	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
X	5440005	X_5440005_SNP [dm3] X_5545972_SNP [dm6]	G	A	7.430e^-5	0.978	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	5810038	X_5810038_SNP [dm3] X_5916005_SNP [dm6]	T	C	7.449e^-5	0.978	UPSTREAM CG3011 INTRON CG3011
3L	11599845	3L_11599845_SNP [dm3] 3L_11606745_SNP [dm6]	T	C	7.587e^-5	0.978	SYNONYMOUS_CODING CG6091
3R	2860427	3R_2860427_SNP [dm3] 3R_7034705_SNP [dm6]	C	T	7.599e^-5	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10691485	3L_10691485_SNP [dm3] 3L_10698385_SNP [dm6]	T	G	7.627e^-5	0.978	INTERGENIC
2R	20323109	2R_20323109_SNP [dm3] 2R_24435586_SNP [dm6]	T	C	7.722e^-5	0.978	INTERGENIC
3L	743058	3L_743058_SNP [dm3] 3L_743058_SNP [dm6]	T	A	7.833e^-5	0.978	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	15532002	2R_15532002_SNP [dm3] 2R_19644497_SNP [dm6]	C	G	7.861e^-5	0.978	DOWNSTREAM CG15124 INTERGENIC
2R	16425872	2R_16425872_SNP [dm3] 2R_20538367_SNP [dm6]	T	C	7.868e^-5	0.978	DOWNSTREAM CG13427 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
2L	2922161	2L_2922161_SNP [dm3] 2L_2922161_SNP [dm6]	T	A	7.996e^-5	0.978	INTRON lilli
3L	16337612	3L_16337612_SNP [dm3] 3L_16344512_SNP [dm6]	G	A	8.029e^-5	0.978	SYNONYMOUS_CODING CG4998	TF binding site mE1_TFBS_cad
2R	6795340	2R_6795340_SNP [dm3] 2R_10907835_SNP [dm6]	A	G	8.206e^-5	0.978	INTERGENIC
2R	11726154	2R_11726154_SNP [dm3] 2R_15838649_SNP [dm6]	G	A	8.316e^-5	0.978	INTRON tun	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Trl
2R	3265898	2R_3265898_SNP [dm3] 2R_7378393_SNP [dm6]	C	A	8.321e^-5	0.978	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
X	14182626	X_14182626_SNP [dm3] X_14288593_SNP [dm6]	G	A	8.423e^-5	0.978	DOWNSTREAM Muc12Ea INTRON CG9400
X	6216091	X_6216091_SNP [dm3] X_6322058_SNP [dm6]	T	C	8.573e^-5	0.978	INTRON CG15894
2R	6795339	2R_6795339_SNP [dm3] 2R_10907834_SNP [dm6]	G	T	8.640e^-5	0.978	INTERGENIC
2R	11327929	2R_11327929_SNP [dm3] 2R_15440424_SNP [dm6]	G	T	8.721e^-5	0.978	INTRON CG43729
X	14154319	X_14154319_SNP [dm3] X_14260286_SNP [dm6]	G	C	8.736e^-5	0.978	UPSTREAM CG1461 INTERGENIC
2L	18871864	2L_18871864_SNP [dm3] 2L_18871864_SNP [dm6]	C	T	8.757e^-5	0.978	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9131332	2R_9131332_SNP [dm3] 2R_13243827_SNP [dm6]	G	T	8.787e^-5	0.978	DOWNSTREAM CR45278 INTERGENIC
3R	15213950	3R_15213950_SNP [dm3] 3R_19388228_SNP [dm6]	G	A	8.800e^-5	0.978	DOWNSTREAM CR34285 INTRON Ino80 & 1 other	TF binding site mE1_TFBS_sens
X	6451169	X_6451169_SNP [dm3] X_6557136_SNP [dm6]	A	T	8.806e^-5	0.978	SYNONYMOUS_CODING CG34417 INTRON CG34417
2R	16864005	2R_16864005_SNP [dm3] 2R_20976500_SNP [dm6]	A	T	8.827e^-5	0.978	UPSTREAM CG9344 INTRON CG34115	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	10264877	3L_10264877_SNP [dm3] 3L_10271777_SNP [dm6]	G	A	8.873e^-5	0.978	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	14555445	3L_14555445_SNP [dm3] 3L_14562345_SNP [dm6]	A	T	8.892e^-5	0.978	INTRON CG34039	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
3L	14560642	3L_14560642_SNP [dm3] 3L_14567542_SNP [dm6]	C	A	8.925e^-5	0.978	INTRON CG42758
2L	10082295	2L_10082295_SNP [dm3] 2L_10082295_SNP [dm6]	C	T	9.002e^-5	0.978	INTRON CG44153	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14031895	2L_14031895_SNP [dm3] 2L_14031895_SNP [dm6]	T	C	9.041e^-5	0.978	UPSTREAM CG18095 DOWNSTREAM CR45284 INTERGENIC
3L	8582894	3L_8582894_SNP [dm3] 3L_8589794_SNP [dm6]	G	C	9.063e^-5	0.978	UPSTREAM CG43078 INTRON CG43078
2L	18328109	2L_18328109_SNP [dm3] 2L_18328109_SNP [dm6]	C	G	9.098e^-5	0.978	INTRON Fas3
X	14042362	X_14042362_SNP [dm3] X_14148329_SNP [dm6]	A	G	9.293e^-5	0.978	INTERGENIC
X	9536658	X_9536658_SNP [dm3] X_9642625_SNP [dm6]	T	A	9.392e^-5	0.978	INTRON l_1_G0232	TF binding site mE1_TFBS_inv
X	6451181	X_6451181_SNP [dm3] X_6557148_SNP [dm6]	A	G	9.411e^-5	0.978	SYNONYMOUS_CODING CG34417 INTRON CG34417
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	9.424e^-5	0.978	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4545922	3L_4545922_SNP [dm3] 3L_4545922_SNP [dm6]	G	A	9.450e^-5	0.978	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10691472	3L_10691472_SNP [dm3] 3L_10698372_SNP [dm6]	T	A	9.459e^-5	0.978	INTERGENIC
2L	21802210	2L_21802210_SNP [dm3] 2L_21802210_SNP [dm6]	G	A	9.477e^-5	0.978	INTERGENIC
2R	20334500	2R_20334500_SNP [dm3] 2R_24446977_SNP [dm6]	A	T	9.494e^-5	0.978	DOWNSTREAM CG3483 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	19401915	X_19401915_SNP [dm3] X_19507882_SNP [dm6]	C	T	9.527e^-5	0.978	SYNONYMOUS_CODING Pfrx INTRON CG14200	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20218360	X_20218360_SNP [dm3] X_20347333_SNP [dm6]	C	A	9.529e^-5	0.978	INTERGENIC
X	14840917	X_14840917_SNP [dm3] X_14946884_SNP [dm6]	T	C	9.559e^-5	0.978	INTRON pdgy
2L	588419	2L_588419_SNP [dm3] 2L_588419_SNP [dm6]	T	A	9.628e^-5	0.978	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
2R	14678389	2R_14678389_SNP [dm3] 2R_18790884_SNP [dm6]	C	A	9.637e^-5	0.978	NON_SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19401789	X_19401789_SNP [dm3] X_19507756_SNP [dm6]	C	T	9.670e^-5	0.978	SYNONYMOUS_CODING Pfrx INTRON CG14200	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13931549	2R_13931549_SNP [dm3] 2R_18044044_SNP [dm6]	A	C	9.685e^-5	0.978	UPSTREAM CG5773 DOWNSTREAM CG5770 INTERGENIC
3L	14376180	3L_14376180_SNP [dm3] 3L_14383080_SNP [dm6]	C	T	9.742e^-5	0.978	UTR_3_PRIME CG43120
3R	21876370	3R_21876370_SNP [dm3] 3R_26050648_SNP [dm6]	T	G	9.749e^-5	0.978	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11251034	2R_11251034_INS [dm3] 2R_15363529_INS [dm6]	A	ATA	9.875e^-5	0.978	INTRON unc-5
X	21160839	X_21160839_SNP [dm3] X_21289812_SNP [dm6]	T	C	9.998e^-5	0.978	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5884780	3L_5884780_SNP [dm3] 3L_5891680_SNP [dm6]	T	G	1.008e^-4	0.978	INTERGENIC
2L	8807137	2L_8807137_SNP [dm3] 2L_8807137_SNP [dm6]	T	C	1.009e^-4	0.978	INTERGENIC
3L	13319661	3L_13319661_SNP [dm3] 3L_13326561_SNP [dm6]	C	A	1.009e^-4	0.978	INTERGENIC
X	21081580	X_21081580_SNP [dm3] X_21210553_SNP [dm6]	A	G	1.010e^-4	0.978	INTRON CG32521
3L	2645026	3L_2645026_SNP [dm3] 3L_2645026_SNP [dm6]	T	A	1.018e^-4	0.978	UPSTREAM CG1143 INTERGENIC
X	14756883	X_14756883_SNP [dm3] X_14862850_SNP [dm6]	C	T	1.022e^-4	0.978	DOWNSTREAM CG9518 INTRON Flo2
3R	19769844	3R_19769844_SNP [dm3] 3R_23944122_SNP [dm6]	C	T	1.025e^-4	0.978	INTRON CG12268	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	17920188	2R_17920188_DEL [dm3] 2R_22032683_DEL [dm6]	GGGCTGG	G	1.026e^-4	0.978	INTRON CG34370
X	12929574	X_12929574_SNP [dm3] X_13035541_SNP [dm6]	A	G	1.030e^-4	0.978	INTRON rad
X	12929584	X_12929584_SNP [dm3] X_13035551_SNP [dm6]	C	G	1.030e^-4	0.978	INTRON rad
2L	18376134	2L_18376134_SNP [dm3] 2L_18376134_SNP [dm6]	C	A	1.037e^-4	0.978	INTRON Fas3	TF binding site mE1_TFBS_sbb
2R	10925628	2R_10925628_SNP [dm3] 2R_15038123_SNP [dm6]	C	T	1.054e^-4	0.978	INTRON hbs
2R	16861864	2R_16861864_SNP [dm3] 2R_20974359_SNP [dm6]	G	C	1.061e^-4	0.978	UPSTREAM CG15649 INTERGENIC
3R	25799122	3R_25799122_SNP [dm3] 3R_29973400_SNP [dm6]	G	C	1.069e^-4	0.978	INTERGENIC
2R	9120533	2R_9120533_SNP [dm3] 2R_13233028_SNP [dm6]	T	A	1.069e^-4	0.978	INTRON CG4670
3L	2611071	3L_2611071_SNP [dm3] 3L_2611071_SNP [dm6]	G	T	1.072e^-4	0.978	SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	1.077e^-4	0.978	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	21600167	3L_21600167_SNP [dm3] 3L_21607067_SNP [dm6]	G	A	1.081e^-4	0.978	INTRON TfAP-2
2R	12456228	2R_12456228_SNP [dm3] 2R_16568723_SNP [dm6]	T	C	1.082e^-4	0.978	SYNONYMOUS_CODING CG4945	TF binding site mE1_TFBS_cad
2R	11330161	2R_11330161_SNP [dm3] 2R_15442656_SNP [dm6]	G	A	1.091e^-4	0.978	INTRON CG43729
X	5120460	X_5120460_SNP [dm3] X_5226427_SNP [dm6]	A	G	1.091e^-4	0.978	INTRON CG15465 & 1 other
3L	6573214	3L_6573214_SNP [dm3] 3L_6580114_SNP [dm6]	C	G	1.095e^-4	0.978	INTRON CG18769 & 1 other
2R	11330408	2R_11330408_SNP [dm3] 2R_15442903_SNP [dm6]	C	T	1.104e^-4	0.978	INTRON CG43729
X	12021505	X_12021505_SNP [dm3] X_12127472_SNP [dm6]	T	A	1.108e^-4	0.978	UPSTREAM Ten-a INTRON Ten-a
2R	10654646	2R_10654646_SNP [dm3] 2R_14767141_SNP [dm6]	G	C	1.121e^-4	0.978	INTRON Spred
3R	21991489	3R_21991489_SNP [dm3] 3R_26165767_SNP [dm6]	A	T	1.133e^-4	0.978	INTERGENIC
2L	3932381	2L_3932381_SNP [dm3] 2L_3932381_SNP [dm6]	T	C	1.135e^-4	0.978	INTRON fred
2L	18872053	2L_18872053_SNP [dm3] 2L_18872053_SNP [dm6]	C	A	1.137e^-4	0.978	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20262267	X_20262267_SNP [dm3] X_20391240_SNP [dm6]	A	G	1.139e^-4	0.978	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16868926	2R_16868926_SNP [dm3] 2R_20981421_SNP [dm6]	T	C	1.145e^-4	0.978	SYNONYMOUS_CODING CG9313	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7331866	3R_7331866_SNP [dm3] 3R_11506144_SNP [dm6]	C	T	1.148e^-4	0.978	DOWNSTREAM dpr5 INTERGENIC
X	16685557	X_16685557_SNP [dm3] X_16791524_SNP [dm6]	T	A	1.157e^-4	0.978	UPSTREAM CG4768 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1629802	3L_1629802_SNP [dm3] 3L_1629802_SNP [dm6]	C	T	1.157e^-4	0.978	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	7726328	3L_7726328_SNP [dm3] 3L_7733228_SNP [dm6]	T	C	1.167e^-4	0.978	DOWNSTREAM Snmp2 INTRON CG32373
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	1.168e^-4	0.978	INTRON dnc
2L	6463898	2L_6463898_SNP [dm3] 2L_6463898_SNP [dm6]	A	T	1.169e^-4	0.978	UTR_5_PRIME CG16947	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	1.170e^-4	0.978	EXON CR44950
3R	25759468	3R_25759468_SNP [dm3] 3R_29933746_SNP [dm6]	C	T	1.173e^-4	0.978	SYNONYMOUS_CODING CG42557 UTR_5_PRIME CG42558 UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16436597	2R_16436597_SNP [dm3] 2R_20549092_SNP [dm6]	C	T	1.175e^-4	0.978	NON_SYNONYMOUS_CODING Obp57d UTR_3_PRIME Cpr57A UPSTREAM Obp57e DOWNSTREAM Cpr57A	regulatory region REDfly_CRMs
2L	10082495	2L_10082495_SNP [dm3] 2L_10082495_SNP [dm6]	G	A	1.178e^-4	0.978	INTRON CG44153
2L	10090429	2L_10090429_SNP [dm3] 2L_10090429_SNP [dm6]	C	T	1.179e^-4	0.978	DOWNSTREAM CG13133 INTRON CG44153
X	12021512	X_12021512_SNP [dm3] X_12127479_SNP [dm6]	A	T	1.179e^-4	0.978	UPSTREAM Ten-a INTRON Ten-a
X	6451166	X_6451166_SNP [dm3] X_6557133_SNP [dm6]	C	T	1.182e^-4	0.978	SYNONYMOUS_CODING CG34417 INTRON CG34417
X	9536672	X_9536672_SNP [dm3] X_9642639_SNP [dm6]	G	T	1.189e^-4	0.978	INTRON l_1_G0232	TF binding site mE1_TFBS_inv
X	6254576	X_6254576_INS [dm3] X_6360543_INS [dm6]	T	TTGGAT	1.192e^-4	0.978	UTR_3_PRIME kdn DOWNSTREAM swaPsi
X	14154449	X_14154449_SNP [dm3] X_14260416_SNP [dm6]	G	T	1.196e^-4	0.978	UPSTREAM CG1461 INTERGENIC
2R	9457526	2R_9457526_SNP [dm3] 2R_13570021_SNP [dm6]	C	G	1.198e^-4	0.978	DOWNSTREAM CG42807 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
3R	25759471	3R_25759471_SNP [dm3] 3R_29933749_SNP [dm6]	T	A	1.202e^-4	0.978	SYNONYMOUS_CODING CG42557 UTR_5_PRIME CG42558 UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18376191	2L_18376191_SNP [dm3] 2L_18376191_SNP [dm6]	G	A	1.203e^-4	0.978	INTRON Fas3
X	12021975	X_12021975_SNP [dm3] X_12127942_SNP [dm6]	G	A	1.205e^-4	0.978	UPSTREAM Ten-a INTRON Ten-a
X	12021418	X_12021418_INS [dm3] X_12127385_INS [dm6]	A	AAA	1.230e^-4	0.978	UPSTREAM Ten-a INTRON Ten-a
2R	9147218	2R_9147218_SNP [dm3] 2R_13259713_SNP [dm6]	T	A	1.237e^-4	0.978	UPSTREAM CG42319 INTERGENIC
2R	9147438	2R_9147438_SNP [dm3] 2R_13259933_SNP [dm6]	G	A	1.240e^-4	0.978	UPSTREAM CG42319 INTERGENIC
X	13792295	X_13792295_SNP [dm3] X_13898262_SNP [dm6]	G	C	1.249e^-4	0.978	INTRON mamo
X	11756760	X_11756760_SNP [dm3] X_11862727_SNP [dm6]	C	T	1.264e^-4	0.978	SYNONYMOUS_CODING ATP7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8246368	X_8246368_SNP [dm3] X_8352335_SNP [dm6]	A	G	1.271e^-4	0.978	INTRON nAChRalpha3
2R	6606946	2R_6606946_INS [dm3] 2R_10719441_INS [dm6]	CCC	ATTTAA	1.278e^-4	0.978	INTRON stan
3L	743084	3L_743084_INS [dm3] 3L_743084_INS [dm6]	T	TT	1.300e^-4	0.978	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	17120347	X_17120347_SNP [dm3] X_17226314_SNP [dm6]	A	G	1.301e^-4	0.978	SYNONYMOUS_CODING CG10598
2R	6559077	2R_6559077_SNP [dm3] 2R_10671572_SNP [dm6]	C	T	1.302e^-4	0.978	INTERGENIC
X	3290362	X_3290362_SNP [dm3] X_3396329_SNP [dm6]	T	A	1.310e^-4	0.978	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8370140	2L_8370140_SNP [dm3] 2L_8370140_SNP [dm6]	C	T	1.310e^-4	0.978	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
3R	13570329	3R_13570329_SNP [dm3] 3R_17744607_SNP [dm6]	A	C	1.311e^-4	0.978	INTRON TyrRII	TF binding site mE1_TFBS_cad
3R	11464735	3R_11464735_SNP [dm3] 3R_15639013_SNP [dm6]	T	A	1.313e^-4	0.978	DOWNSTREAM CG43336 INTERGENIC	TF binding site BDTNP1_TFBS_da
X	3051302	X_3051302_SNP [dm3] X_3157269_SNP [dm6]	G	T	1.319e^-4	0.978	INTRON N
3L	2172627	3L_2172627_SNP [dm3] 3L_2172627_SNP [dm6]	T	C	1.328e^-4	0.978	DOWNSTREAM CG15820 EXON CR15821
3R	11464738	3R_11464738_INS [dm3] 3R_15639016_INS [dm6]	T	TTAGTTAATATTTTCAA...	1.335e^-4	0.978	DOWNSTREAM CG43336 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	11464743	3R_11464743_INS [dm3] 3R_15639021_INS [dm6]	A	AAACACAACTATAGTGAATT...	1.335e^-4	0.978	DOWNSTREAM CG43336 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	12383449	3R_12383449_SNP [dm3] 3R_16557727_SNP [dm6]	T	C	1.345e^-4	0.978	INTRON CG42342
2R	7148303	2R_7148303_SNP [dm3] 2R_11260798_SNP [dm6]	C	G	1.346e^-4	0.978	UPSTREAM Cpr47Ec DOWNSTREAM Cpr47Ed INTERGENIC
3L	11843592	3L_11843592_DEL [dm3] 3L_11850492_DEL [dm6]	TT	T	1.348e^-4	0.978	DOWNSTREAM CG44837 INTERGENIC
X	19402422	X_19402422_SNP [dm3] X_19508389_SNP [dm6]	C	G	1.348e^-4	0.978	SYNONYMOUS_CODING Pfrx INTRON CG14200	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve
X	12021571	X_12021571_DEL [dm3] X_12127538_DEL [dm6]	TATT	T	1.365e^-4	0.978	UPSTREAM Ten-a INTRON Ten-a
X	15281923	X_15281923_SNP [dm3] X_15387890_SNP [dm6]	T	A	1.381e^-4	0.978	UTR_3_PRIME Cngl
3L	11276731	3L_11276731_SNP [dm3] 3L_11283631_SNP [dm6]	A	G	1.397e^-4	0.978	INTERGENIC
3R	20225939	3R_20225939_SNP [dm3] 3R_24400217_SNP [dm6]	G	T	1.397e^-4	0.978	UTR_3_PRIME nAChRalpha1 DOWNSTREAM nAChRalpha1
3R	25758812	3R_25758812_SNP [dm3] 3R_29933090_SNP [dm6]	G	T	1.398e^-4	0.978	UPSTREAM CG42557 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	11464759	3R_11464759_SNP [dm3] 3R_15639037_SNP [dm6]	C	T	1.398e^-4	0.978	DOWNSTREAM CG43336 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	9501642	2L_9501642_SNP [dm3] 2L_9501642_SNP [dm6]	G	C	1.405e^-4	0.978	INTRON CG33298
3L	2642695	3L_2642695_SNP [dm3] 3L_2642695_SNP [dm6]	G	A	1.413e^-4	0.978	SYNONYMOUS_CODING CG14949 DOWNSTREAM MEP-1 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	14622018	X_14622018_SNP [dm3] X_14727985_SNP [dm6]	C	G	1.415e^-4	0.978	INTRON NetB
3L	2611040	3L_2611040_SNP [dm3] 3L_2611040_SNP [dm6]	G	T	1.415e^-4	0.978	NON_SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4147037	2L_4147037_SNP [dm3] 2L_4147037_SNP [dm6]	A	T	1.444e^-4	0.978	INTERGENIC
2L	3997257	2L_3997257_INS [dm3] 2L_3997257_INS [dm6]	T	TGA	1.452e^-4	0.978	INTERGENIC
2L	2614952	2L_2614952_SNP [dm3] 2L_2614952_SNP [dm6]	A	T	1.457e^-4	0.978	INTERGENIC
X	8647045	X_8647045_SNP [dm3] X_8753012_SNP [dm6]	A	G	1.472e^-4	0.978	INTERGENIC
2R	9131363	2R_9131363_SNP [dm3] 2R_13243858_SNP [dm6]	T	C	1.477e^-4	0.978	DOWNSTREAM CR45278 INTERGENIC
2R	19963263	2R_19963263_SNP [dm3] 2R_24075740_SNP [dm6]	A	C	1.478e^-4	0.978	UTR_3_PRIME Mlp60A DOWNSTREAM Mlp60A INTRON Mlp60A
X	12264143	X_12264143_SNP [dm3] X_12370110_SNP [dm6]	C	A	1.485e^-4	0.978	INTERGENIC
2R	14086288	2R_14086288_SNP [dm3] 2R_18198783_SNP [dm6]	A	C	1.487e^-4	0.978	INTERGENIC
3L	2644985	3L_2644985_SNP [dm3] 3L_2644985_SNP [dm6]	T	A	1.508e^-4	0.978	UPSTREAM CG1143 INTERGENIC
3R	12082718	3R_12082718_SNP [dm3] 3R_16256996_SNP [dm6]	C	T	1.517e^-4	0.978	SYNONYMOUS_CODING tara	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16791311	X_16791311_SNP [dm3] X_16897278_SNP [dm6]	G	C	1.519e^-4	0.978	UPSTREAM CG33252 INTERGENIC
3R	5129759	3R_5129759_SNP [dm3] 3R_9304037_SNP [dm6]	C	A	1.545e^-4	0.978	INTRON CG8861
X	12021978	X_12021978_SNP [dm3] X_12127945_SNP [dm6]	A	G	1.546e^-4	0.978	UPSTREAM Ten-a INTRON Ten-a
3L	7721688	3L_7721688_SNP [dm3] 3L_7728588_SNP [dm6]	A	G	1.546e^-4	0.978	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
3L	2683655	3L_2683655_SNP [dm3] 3L_2683655_SNP [dm6]	A	G	1.561e^-4	0.978	INTRON Fife
3R	18478663	3R_18478663_SNP [dm3] 3R_22652941_SNP [dm6]	T	A	1.561e^-4	0.978	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20262270	X_20262270_INS [dm3] X_20391243_INS [dm6]	A	ATCAATAATAATTCAA...	1.571e^-4	0.978	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2868311	3R_2868311_INS [dm3] 3R_7042589_INS [dm6]	C	CGGA	1.589e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	20602541	3R_20602541_SNP [dm3] 3R_24776819_SNP [dm6]	G	A	1.592e^-4	0.978	INTRON CG42331
X	5826875	X_5826875_SNP [dm3] X_5932842_SNP [dm6]	A	T	1.605e^-4	0.978	INTRON CG3726
X	11756922	X_11756922_SNP [dm3] X_11862889_SNP [dm6]	T	A	1.608e^-4	0.978	INTRON ATP7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9147038	2R_9147038_SNP [dm3] 2R_13259533_SNP [dm6]	G	A	1.610e^-4	0.978	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3L	7072423	3L_7072423_SNP [dm3] 3L_7079323_SNP [dm6]	C	A	1.612e^-4	0.978	INTERGENIC
X	9536660	X_9536660_SNP [dm3] X_9642627_SNP [dm6]	T	A	1.613e^-4	0.978	INTRON l_1_G0232	TF binding site mE1_TFBS_inv
3R	18478641	3R_18478641_SNP [dm3] 3R_22652919_SNP [dm6]	G	T	1.622e^-4	0.978	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5087274	3R_5087274_SNP [dm3] 3R_9261552_SNP [dm6]	C	A	1.624e^-4	0.978	INTRON VhaM8.9	TF binding site mE1_TFBS_HSA
X	19402425	X_19402425_SNP [dm3] X_19508392_SNP [dm6]	T	C	1.624e^-4	0.978	SYNONYMOUS_CODING Pfrx INTRON CG14200	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve
X	11756925	X_11756925_SNP [dm3] X_11862892_SNP [dm6]	T	C	1.630e^-4	0.978	INTRON ATP7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14813948	3L_14813948_SNP [dm3] 3L_14820848_SNP [dm6]	G	A	1.647e^-4	0.978	INTRON CG17839
3R	6253185	3R_6253185_SNP [dm3] 3R_10427463_SNP [dm6]	G	C	1.655e^-4	0.978	INTERGENIC
2L	10090428	2L_10090428_SNP [dm3] 2L_10090428_SNP [dm6]	G	T	1.657e^-4	0.978	DOWNSTREAM CG13133 INTRON CG44153
2R	13950559	2R_13950559_SNP [dm3] 2R_18063054_SNP [dm6]	A	T	1.657e^-4	0.978	INTRON CG34386
2R	10837352	2R_10837352_SNP [dm3] 2R_14949847_SNP [dm6]	A	G	1.658e^-4	0.978	UPSTREAM aPKC INTRON aPKC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	14856541	X_14856541_SNP [dm3] X_14962508_SNP [dm6]	G	A	1.678e^-4	0.978	INTRON eag
X	18430662	X_18430662_SNP [dm3] X_18536629_SNP [dm6]	G	A	1.698e^-4	0.978	INTRON Bx
3L	743013	3L_743013_SNP [dm3] 3L_743013_SNP [dm6]	G	A	1.699e^-4	0.978	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	376777	2L_376777_SNP [dm3] 2L_376777_SNP [dm6]	G	A	1.701e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	17786779	2R_17786779_SNP [dm3] 2R_21899274_SNP [dm6]	T	C	1.705e^-4	0.978	INTRON Fili
3R	10122680	3R_10122680_SNP [dm3] 3R_14296958_SNP [dm6]	T	A	1.711e^-4	0.978	INTRON CG12207
2R	16864986	2R_16864986_SNP [dm3] 2R_20977481_SNP [dm6]	A	G	1.713e^-4	0.978	UTR_3_PRIME CG9344 DOWNSTREAM CG15650 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	11849869	2L_11849869_DEL [dm3] 2L_11849869_DEL [dm6]	TTTTA	G	1.716e^-4	0.978	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
3R	25108317	3R_25108317_SNP [dm3] 3R_29282595_SNP [dm6]	C	T	1.720e^-4	0.978	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4163918	2L_4163918_SNP [dm3] 2L_4163918_SNP [dm6]	A	C	1.736e^-4	0.978	DOWNSTREAM Or24a INTERGENIC
2R	9385622	2R_9385622_SNP [dm3] 2R_13498117_SNP [dm6]	T	A	1.743e^-4	0.978	INTRON drk
2R	16864990	2R_16864990_SNP [dm3] 2R_20977485_SNP [dm6]	G	T	1.745e^-4	0.978	UTR_3_PRIME CG9344 DOWNSTREAM CG15650 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	9147009	2R_9147009_SNP [dm3] 2R_13259504_SNP [dm6]	T	G	1.758e^-4	0.978	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2R	11330331	2R_11330331_SNP [dm3] 2R_15442826_SNP [dm6]	A	G	1.759e^-4	0.978	INTRON CG43729
2R	16866821	2R_16866821_SNP [dm3] 2R_20979316_SNP [dm6]	G	T	1.763e^-4	0.978	UTR_5_PRIME CG9313 UPSTREAM CG9313 & 1 other
3L	19472074	3L_19472074_SNP [dm3] 3L_19478974_SNP [dm6]	G	A	1.768e^-4	0.978	UPSTREAM CR32207 DOWNSTREAM CR42842 INTERGENIC
2L	17283229	2L_17283229_SNP [dm3] 2L_17283229_SNP [dm6]	T	A	1.771e^-4	0.978	INTERGENIC
X	11756868	X_11756868_SNP [dm3] X_11862835_SNP [dm6]	G	T	1.780e^-4	0.978	SYNONYMOUS_CODING ATP7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12437067	X_12437067_SNP [dm3] X_12543034_SNP [dm6]	T	A	1.782e^-4	0.978	INTRON CG43921
2R	9131432	2R_9131432_SNP [dm3] 2R_13243927_SNP [dm6]	T	C	1.793e^-4	0.978	DOWNSTREAM CR45278 INTERGENIC
2L	1945327	2L_1945327_SNP [dm3] 2L_1945327_SNP [dm6]	C	T	1.795e^-4	0.978	NON_SYNONYMOUS_CODING CG15357 DOWNSTREAM CG33673
X	20262315	X_20262315_DEL [dm3] X_20391288_DEL [dm6]	TGATGTTTCTTAT...	T	1.800e^-4	0.978	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14660016	3R_14660016_SNP [dm3] 3R_18834294_SNP [dm6]	G	A	1.802e^-4	0.978	INTRON CG18208
2R	9147010	2R_9147010_SNP [dm3] 2R_13259505_SNP [dm6]	T	G	1.810e^-4	0.978	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3R	6105638	3R_6105638_DEL [dm3] 3R_10279916_DEL [dm6]	ATGACTCCA	A	1.811e^-4	0.978	INTRON CG43143
2R	11521734	2R_11521734_SNP [dm3] 2R_15634229_SNP [dm6]	C	A	1.817e^-4	0.978	INTRON CG42524
2R	19719350	2R_19719350_SNP [dm3] 2R_23831827_SNP [dm6]	T	G	1.818e^-4	0.978	INTRON CG5549
3L	7721690	3L_7721690_SNP [dm3] 3L_7728590_SNP [dm6]	T	G	1.831e^-4	0.978	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
X	15413677	X_15413677_SNP [dm3] X_15519644_SNP [dm6]	C	G	1.834e^-4	0.978	INTRON Ac13E
3R	5414756	3R_5414756_SNP [dm3] 3R_9589034_SNP [dm6]	A	C	1.840e^-4	0.978	SYNONYMOUS_CODING P58IPK DOWNSTREAM bocksbeutel	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	14182736	X_14182736_SNP [dm3] X_14288703_SNP [dm6]	A	G	1.845e^-4	0.978	DOWNSTREAM Muc12Ea INTRON CG9400	TF binding site mE1_TFBS_HSA
2R	13242965	2R_13242965_SNP [dm3] 2R_17355460_SNP [dm6]	A	T	1.851e^-4	0.978	INTRON mbl
2R	12116819	2R_12116819_SNP [dm3] 2R_16229314_SNP [dm6]	A	G	1.852e^-4	0.978	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	16791329	X_16791329_SNP [dm3] X_16897296_SNP [dm6]	G	A	1.853e^-4	0.978	UPSTREAM CG33252 INTERGENIC
3L	5893442	3L_5893442_SNP [dm3] 3L_5900342_SNP [dm6]	A	C	1.856e^-4	0.978	SYNONYMOUS_CODING CG32409 DOWNSTREAM CG5592 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12021676	X_12021676_SNP [dm3] X_12127643_SNP [dm6]	C	T	1.857e^-4	0.978	UPSTREAM Ten-a INTRON Ten-a
2L	18378494	2L_18378494_SNP [dm3] 2L_18378494_SNP [dm6]	G	T	1.859e^-4	0.978	UPSTREAM CG34171 INTRON Fas3
2L	18871899	2L_18871899_SNP [dm3] 2L_18871899_SNP [dm6]	T	C	1.879e^-4	0.978	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11756923	X_11756923_SNP [dm3] X_11862890_SNP [dm6]	C	A	1.886e^-4	0.978	INTRON ATP7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21183165	X_21183165_SNP [dm3] X_21312138_SNP [dm6]	T	A	1.891e^-4	0.978	SYNONYMOUS_CODING CG1801
2R	9147435	2R_9147435_SNP [dm3] 2R_13259930_SNP [dm6]	T	A	1.891e^-4	0.978	UPSTREAM CG42319 INTERGENIC
3R	22615421	3R_22615421_SNP [dm3] 3R_26789699_SNP [dm6]	T	A	1.895e^-4	0.978	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	7887433	3L_7887433_SNP [dm3] 3L_7894333_SNP [dm6]	A	G	1.923e^-4	0.978	NON_SYNONYMOUS_CODING CG32365 UPSTREAM eIF4E-5	TF binding site mE1_TFBS_cad
2L	1677679	2L_1677679_SNP [dm3] 2L_1677679_SNP [dm6]	G	A	1.936e^-4	0.978	INTRON chinmo
2L	3348342	2L_3348342_DEL [dm3] 2L_3348342_DEL [dm6]	ACGCACATATTTA...	A	1.959e^-4	0.978	INTRON E23
X	16855642	X_16855642_SNP [dm3] X_16961609_SNP [dm6]	C	A	1.962e^-4	0.978	SYNONYMOUS_CODING CG9086	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15234136	3L_15234136_SNP [dm3] 3L_15241036_SNP [dm6]	A	G	1.973e^-4	0.978	UTR_3_PRIME Tollo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	12021503	X_12021503_SNP [dm3] X_12127470_SNP [dm6]	T	A	1.978e^-4	0.978	UPSTREAM Ten-a INTRON Ten-a
2L	7207197	2L_7207197_SNP [dm3] 2L_7207197_SNP [dm6]	A	G	1.984e^-4	0.978	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784	TF binding site mE1_TFBS_sens
2R	3792574	2R_3792574_SNP [dm3] 2R_7905069_SNP [dm6]	A	G	1.997e^-4	0.978	INTRON CG30377
3R	11464740	3R_11464740_SNP [dm3] 3R_15639018_SNP [dm6]	T	A	2.007e^-4	0.978	DOWNSTREAM CG43336 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	11464746	3R_11464746_SNP [dm3] 3R_15639024_SNP [dm6]	T	A	2.007e^-4	0.978	DOWNSTREAM CG43336 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	3143873	3L_3143873_SNP [dm3] 3L_3143873_SNP [dm6]	T	A	2.007e^-4	0.978	UTR_5_PRIME CG1291 UPSTREAM CG11537	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	11724908	2R_11724908_SNP [dm3] 2R_15837403_SNP [dm6]	C	T	2.008e^-4	0.978	INTRON tun	regulatory region REDfly_CRMs
2R	13156683	2R_13156683_SNP [dm3] 2R_17269178_SNP [dm6]	T	C	2.016e^-4	0.978	INTRON mbl	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run
3L	1908322	3L_1908322_SNP [dm3] 3L_1908322_SNP [dm6]	T	G	2.027e^-4	0.978	INTRON CG1887
3L	14931260	3L_14931260_SNP [dm3] 3L_14938160_SNP [dm6]	G	C	2.030e^-4	0.978	INTRON DCX-EMAP
3L	15065525	3L_15065525_SNP [dm3] 3L_15072425_SNP [dm6]	G	A	2.033e^-4	0.978	UPSTREAM cp309 INTRON cp309	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
2L	11690194	2L_11690194_SNP [dm3] 2L_11690194_SNP [dm6]	A	G	2.035e^-4	0.978	INTERGENIC
3R	6105532	3R_6105532_SNP [dm3] 3R_10279810_SNP [dm6]	C	T	2.037e^-4	0.978	INTRON CG43143
2R	21076580	2R_21076580_SNP [dm3] 2R_25189057_SNP [dm6]	C	T	2.038e^-4	0.978	UPSTREAM CG9380 INTRON CG9380
3R	15767069	3R_15767069_SNP [dm3] 3R_19941347_SNP [dm6]	G	A	2.039e^-4	0.978	INTRON Hs6st
X	6216247	X_6216247_SNP [dm3] X_6322214_SNP [dm6]	T	A	2.040e^-4	0.978	INTRON CG15894
X	12021543	X_12021543_SNP [dm3] X_12127510_SNP [dm6]	T	A	2.068e^-4	0.978	UPSTREAM Ten-a INTRON Ten-a
2R	11530595	2R_11530595_SNP [dm3] 2R_15643090_SNP [dm6]	T	A	2.075e^-4	0.978	INTRON CG42524
3R	11982389	3R_11982389_DEL [dm3] 3R_16156667_DEL [dm6]	GATGAATG	G	2.082e^-4	0.978	INTRON CG6006
3R	2577440	3R_2577440_SNP [dm3] 3R_6751718_SNP [dm6]	G	A	2.086e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17877822	3R_17877822_SNP [dm3] 3R_22052100_SNP [dm6]	C	T	2.087e^-4	0.978	INTRON how	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	5085332	3R_5085332_SNP [dm3] 3R_9259610_SNP [dm6]	C	A	2.091e^-4	0.978	INTRON CG8436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	4928467	X_4928467_SNP [dm3] X_5034434_SNP [dm6]	T	A	2.094e^-4	0.978	INTRON CR44833
3L	9873427	3L_9873427_SNP [dm3] 3L_9880327_SNP [dm6]	A	G	2.098e^-4	0.978	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
3R	5087199	3R_5087199_SNP [dm3] 3R_9261477_SNP [dm6]	A	G	2.100e^-4	0.978	INTRON VhaM8.9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	413912	3L_413912_SNP [dm3] 3L_413912_SNP [dm6]	C	T	2.122e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	12821028	2R_12821028_SNP [dm3] 2R_16933523_SNP [dm6]	A	T	2.122e^-4	0.978	INTRON Pkc53E	TF binding site BDTNP1_TFBS_twi
X	20218600	X_20218600_SNP [dm3] X_20347573_SNP [dm6]	T	A	2.128e^-4	0.978	INTERGENIC
2R	9147034	2R_9147034_SNP [dm3] 2R_13259529_SNP [dm6]	G	T	2.132e^-4	0.978	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
X	9915703	X_9915703_SNP [dm3] X_10021670_SNP [dm6]	G	T	2.132e^-4	0.978	INTRON Cht6
3L	8518875	3L_8518875_SNP [dm3] 3L_8525775_SNP [dm6]	A	G	2.138e^-4	0.978	UPSTREAM GstO1 INTRON foi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	11177864	2R_11177864_SNP [dm3] 2R_15290359_SNP [dm6]	A	G	2.148e^-4	0.978	INTRON Trpm
2R	12116981	2R_12116981_SNP [dm3] 2R_16229476_SNP [dm6]	C	T	2.152e^-4	0.978	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2645067	3L_2645067_SNP [dm3] 3L_2645067_SNP [dm6]	C	T	2.156e^-4	0.978	UPSTREAM CG1143 INTERGENIC
X	14756934	X_14756934_SNP [dm3] X_14862901_SNP [dm6]	T	G	2.164e^-4	0.978	DOWNSTREAM CG9518 INTRON Flo2
3L	12155898	3L_12155898_SNP [dm3] 3L_12162798_SNP [dm6]	T	C	2.165e^-4	0.978	INTRON CG9760
2L	4784697	2L_4784697_SNP [dm3] 2L_4784697_SNP [dm6]	G	T	2.166e^-4	0.978	INTRON CG15630
2R	11327910	2R_11327910_SNP [dm3] 2R_15440405_SNP [dm6]	T	C	2.171e^-4	0.978	INTRON CG43729
2L	8447265	2L_8447265_SNP [dm3] 2L_8447265_SNP [dm6]	A	G	2.171e^-4	0.978	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	5064424	X_5064424_SNP [dm3] X_5170391_SNP [dm6]	G	A	2.180e^-4	0.978	INTRON rg & 1 other
X	11756604	X_11756604_SNP [dm3] X_11862571_SNP [dm6]	T	C	2.182e^-4	0.978	SYNONYMOUS_CODING ATP7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18364054	2R_18364054_SNP [dm3] 2R_22476549_SNP [dm6]	G	A	2.192e^-4	0.978	NON_SYNONYMOUS_CODING CG45063 UPSTREAM CG45062	TF binding site mE1_TFBS_cad
2L	4143125	2L_4143125_DEL [dm3] 2L_4143125_DEL [dm6]	TAGATTGAATGTGAA...	T	2.195e^-4	0.978	INTERGENIC
X	8292927	X_8292927_SNP [dm3] X_8398894_SNP [dm6]	T	C	2.200e^-4	0.978	UPSTREAM CG10555 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12020517	X_12020517_SNP [dm3] X_12126484_SNP [dm6]	A	T	2.200e^-4	0.978	INTRON Ten-a
3L	16336798	3L_16336798_INS [dm3] 3L_16343698_INS [dm6]	T	TGCCATTAGGAAA...	2.205e^-4	0.978	INTRON CG4998	TF binding site mE1_TFBS_cad
2L	18400590	2L_18400590_SNP [dm3] 2L_18400590_SNP [dm6]	T	C	2.209e^-4	0.978	EXON CR44486
3R	6742567	3R_6742567_SNP [dm3] 3R_10916845_SNP [dm6]	C	A	2.213e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	10811113	3R_10811113_SNP [dm3] 3R_14985391_SNP [dm6]	G	A	2.221e^-4	0.978	INTERGENIC
3R	10811112	3R_10811112_SNP [dm3] 3R_14985390_SNP [dm6]	T	C	2.223e^-4	0.978	INTERGENIC
2L	8370138	2L_8370138_SNP [dm3] 2L_8370138_SNP [dm6]	C	G	2.224e^-4	0.978	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
2R	14726419	2R_14726419_SNP [dm3] 2R_18838914_SNP [dm6]	A	G	2.225e^-4	0.978	SYNONYMOUS_CODING CG15099	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6023720	3L_6023720_INS [dm3] 3L_6030620_INS [dm6]	TG	GAAGGA	2.227e^-4	0.978	INTERGENIC
2R	19306885	2R_19306885_SNP [dm3] 2R_23419362_SNP [dm6]	A	G	2.241e^-4	0.978	INTRON CG9812
3R	12383420	3R_12383420_SNP [dm3] 3R_16557698_SNP [dm6]	G	C	2.254e^-4	0.978	INTRON CG42342
X	14841415	X_14841415_SNP [dm3] X_14947382_SNP [dm6]	T	A	2.255e^-4	0.978	INTRON pdgy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10868903	X_10868903_SNP [dm3] X_10974870_SNP [dm6]	A	G	2.258e^-4	0.978	INTRON CG42339
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	2.259e^-4	0.978	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9147155	2R_9147155_SNP [dm3] 2R_13259650_SNP [dm6]	A	T	2.269e^-4	0.978	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
X	15425490	X_15425490_SNP [dm3] X_15531457_SNP [dm6]	T	A	2.270e^-4	0.978	INTRON Ac13E	TF binding site BDTNP1_TFBS_twi
3L	1042784	3L_1042784_SNP [dm3] 3L_1042784_SNP [dm6]	G	A	2.273e^-4	0.978	INTRON bab1
3R	25765336	3R_25765336_SNP [dm3] 3R_29939614_SNP [dm6]	T	C	2.280e^-4	0.978	SYNONYMOUS_CODING CG15523
2R	10925565	2R_10925565_SNP [dm3] 2R_15038060_SNP [dm6]	T	A	2.285e^-4	0.978	SYNONYMOUS_CODING hbs
2R	11339584	2R_11339584_SNP [dm3] 2R_15452079_SNP [dm6]	G	C	2.285e^-4	0.978	INTRON CG43729
X	14756893	X_14756893_SNP [dm3] X_14862860_SNP [dm6]	T	A	2.291e^-4	0.978	DOWNSTREAM CG9518 INTRON Flo2
2R	13397292	2R_13397292_SNP [dm3] 2R_17509787_SNP [dm6]	A	C	2.293e^-4	0.978	UTR_5_PRIME CG34193 UPSTREAM CG34193
2L	3439090	2L_3439090_DEL [dm3] 2L_3439090_DEL [dm6]	GTTATTC	G	2.300e^-4	0.978	INTERGENIC
X	12242922	X_12242922_INS [dm3] X_12348889_INS [dm6]	T	TAT	2.300e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8447278	2L_8447278_SNP [dm3] 2L_8447278_SNP [dm6]	T	G	2.313e^-4	0.978	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	7408586	2R_7408586_SNP [dm3] 2R_11521081_SNP [dm6]	C	T	2.320e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9131375	2R_9131375_SNP [dm3] 2R_13243870_SNP [dm6]	G	A	2.330e^-4	0.978	DOWNSTREAM CR45278 INTERGENIC
2R	14978887	2R_14978887_SNP [dm3] 2R_19091382_SNP [dm6]	G	A	2.331e^-4	0.978	SYNONYMOUS_CODING 5-HT1A
X	14154432	X_14154432_SNP [dm3] X_14260399_SNP [dm6]	A	T	2.338e^-4	0.978	UPSTREAM CG1461 INTERGENIC
2L	18930447	2L_18930447_SNP [dm3] 2L_18930447_SNP [dm6]	G	A	2.339e^-4	0.978	INTRON ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9430498	2L_9430498_SNP [dm3] 2L_9430498_SNP [dm6]	T	A	2.346e^-4	0.978	UPSTREAM FucTB & 1 other INTRON FucTB
2L	7197934	2L_7197934_SNP [dm3] 2L_7197934_SNP [dm6]	A	G	2.353e^-4	0.978	INTRON CG4502
X	21063578	X_21063578_SNP [dm3] X_21192551_SNP [dm6]	G	A	2.364e^-4	0.978	UPSTREAM CG14579 INTERGENIC
X	8402577	X_8402577_SNP [dm3] X_8508544_SNP [dm6]	G	A	2.366e^-4	0.978	INTRON CG33181
3L	3547796	3L_3547796_SNP [dm3] 3L_3547796_SNP [dm6]	T	A	2.371e^-4	0.978	INTRON Eip63E
3R	12383365	3R_12383365_SNP [dm3] 3R_16557643_SNP [dm6]	G	A	2.379e^-4	0.978	INTRON CG42342
3R	18739168	3R_18739168_SNP [dm3] 3R_22913446_SNP [dm6]	A	T	2.381e^-4	0.978	INTRON klg
3R	18909679	3R_18909679_SNP [dm3] 3R_23083957_SNP [dm6]	C	A	2.382e^-4	0.978	INTRON CG13830	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8986555	2L_8986555_SNP [dm3] 2L_8986555_SNP [dm6]	T	C	2.385e^-4	0.978	INTRON rost
X	12699254	X_12699254_SNP [dm3] X_12805221_SNP [dm6]	G	T	2.391e^-4	0.978	DOWNSTREAM CG3775 INTRON Pde9
2R	16289150	2R_16289150_SNP [dm3] 2R_20401645_SNP [dm6]	G	A	2.408e^-4	0.978	INTERGENIC
X	12021863	X_12021863_SNP [dm3] X_12127830_SNP [dm6]	G	A	2.423e^-4	0.978	UPSTREAM Ten-a INTRON Ten-a
3L	9873577	3L_9873577_SNP [dm3] 3L_9880477_SNP [dm6]	T	C	2.428e^-4	0.978	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
2R	20591829	2R_20591829_SNP [dm3] 2R_24704306_SNP [dm6]	T	G	2.428e^-4	0.978	INTRON Mid1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19719423	2R_19719423_SNP [dm3] 2R_23831900_SNP [dm6]	A	G	2.428e^-4	0.978	INTRON CG5549
2L	5287062	2L_5287062_SNP [dm3] 2L_5287062_SNP [dm6]	A	G	2.435e^-4	0.978	UPSTREAM CR44742 DOWNSTREAM CR44743 INTERGENIC
3R	25435077	3R_25435077_SNP [dm3] 3R_29609355_SNP [dm6]	C	T	2.436e^-4	0.978	DOWNSTREAM Diedel2 INTRON alph
X	14182147	X_14182147_SNP [dm3] X_14288114_SNP [dm6]	G	A	2.450e^-4	0.978	UTR_3_PRIME Muc12Ea & 1 other
X	6451143	X_6451143_SNP [dm3] X_6557110_SNP [dm6]	A	C	2.455e^-4	0.978	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
2R	11330698	2R_11330698_SNP [dm3] 2R_15443193_SNP [dm6]	G	T	2.455e^-4	0.978	INTRON CG43729
2L	4144537	2L_4144537_SNP [dm3] 2L_4144537_SNP [dm6]	T	G	2.457e^-4	0.978	INTERGENIC
3R	9959340	3R_9959340_SNP [dm3] 3R_14133618_SNP [dm6]	C	T	2.468e^-4	0.978	INTERGENIC
3R	11455540	3R_11455540_DEL [dm3] 3R_15629818_DEL [dm6]	TCAGCTTGTCT...	T	2.472e^-4	0.978	INTERGENIC
X	14182722	X_14182722_DEL [dm3] X_14288689_DEL [dm6]	CAAT	C	2.491e^-4	0.978	DOWNSTREAM Muc12Ea INTRON CG9400	TF binding site mE1_TFBS_HSA
3L	14441439	3L_14441439_SNP [dm3] 3L_14448339_SNP [dm6]	A	T	2.493e^-4	0.978	UTR_5_PRIME bbg INTRON bbg	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
X	14171256	X_14171256_SNP [dm3] X_14277223_SNP [dm6]	G	A	2.496e^-4	0.978	UTR_3_PRIME na UPSTREAM Muc12Ea DOWNSTREAM na
X	11730281	X_11730281_SNP [dm3] X_11836248_SNP [dm6]	A	C	2.497e^-4	0.978	UTR_3_PRIME rudhira DOWNSTREAM rudhira
2R	8198528	2R_8198528_SNP [dm3] 2R_12311023_SNP [dm6]	T	C	2.499e^-4	0.978	NON_SYNONYMOUS_CODING CG30203 DOWNSTREAM CG17739
X	16052774	X_16052774_SNP [dm3] X_16158741_SNP [dm6]	A	G	2.512e^-4	0.978	INTERGENIC
X	3421142	X_3421142_SNP [dm3] X_3527109_SNP [dm6]	T	A	2.533e^-4	0.978	INTRON CG32791
2R	17920187	2R_17920187_SNP [dm3] 2R_22032682_SNP [dm6]	G	T	2.538e^-4	0.978	INTRON CG34370
X	19402497	X_19402497_SNP [dm3] X_19508464_SNP [dm6]	T	C	2.540e^-4	0.978	SYNONYMOUS_CODING Pfrx INTRON CG14200	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve
X	12929494	X_12929494_SNP [dm3] X_13035461_SNP [dm6]	A	G	2.541e^-4	0.978	INTRON rad
3L	12146688	3L_12146688_SNP [dm3] 3L_12153588_SNP [dm6]	T	G	2.542e^-4	0.978	INTRON Nrx-IV
X	14842374	X_14842374_INS [dm3] X_14948341_INS [dm6]	A	ACATAGTCCATAAGGTA...	2.542e^-4	0.978	INTRON pdgy	TF binding site mE1_TFBS_HSA
2R	15531961	2R_15531961_SNP [dm3] 2R_19644456_SNP [dm6]	A	G	2.548e^-4	0.978	DOWNSTREAM CG15124 INTERGENIC
X	12020051	X_12020051_SNP [dm3] X_12126018_SNP [dm6]	T	C	2.551e^-4	0.978	INTRON Ten-a
2L	11031584	2L_11031584_SNP [dm3] 2L_11031584_SNP [dm6]	G	C	2.555e^-4	0.978	INTRON Samuel
2R	19127148	2R_19127148_SNP [dm3] 2R_23239625_SNP [dm6]	T	G	2.555e^-4	0.978	INTERGENIC
3L	4839458	3L_4839458_SNP [dm3] 3L_4839458_SNP [dm6]	T	A	2.562e^-4	0.978	START_GAINED CG13707 UTR_5_PRIME CG13707 INTRON CG13707
X	3381344	X_3381344_SNP [dm3] X_3487311_SNP [dm6]	T	C	2.573e^-4	0.978	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_sens
X	18464310	X_18464310_SNP [dm3] X_18570277_SNP [dm6]	C	T	2.593e^-4	0.978	INTRON Bx	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
3L	14352506	3L_14352506_SNP [dm3] 3L_14359406_SNP [dm6]	G	T	2.595e^-4	0.978	INTRON fz	TF binding site mE1_TFBS_HSA
3L	2172990	3L_2172990_SNP [dm3] 3L_2172990_SNP [dm6]	T	C	2.598e^-4	0.978	UPSTREAM CR15821 DOWNSTREAM CG15820 INTERGENIC	TF binding site mE1_TFBS_cad
3R	6253280	3R_6253280_SNP [dm3] 3R_10427558_SNP [dm6]	T	A	2.602e^-4	0.978	INTERGENIC
2R	9337391	2R_9337391_SNP [dm3] 2R_13449886_SNP [dm6]	A	T	2.602e^-4	0.978	UPSTREAM cnn & 1 other INTRON cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	10847556	2R_10847556_SNP [dm3] 2R_14960051_SNP [dm6]	T	G	2.604e^-4	0.978	INTRON aPKC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3376671	X_3376671_SNP [dm3] X_3482638_SNP [dm6]	G	A	2.607e^-4	0.978	UPSTREAM CG10802 & 1 other INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	13274963	3L_13274963_SNP [dm3] 3L_13281863_SNP [dm6]	T	C	2.608e^-4	0.978	UPSTREAM CR43146 INTERGENIC
X	6451002	X_6451002_SNP [dm3] X_6556969_SNP [dm6]	A	G	2.616e^-4	0.978	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
3L	12146707	3L_12146707_INS [dm3] 3L_12153607_INS [dm6]	G	GAT	2.620e^-4	0.978	INTRON Nrx-IV
3L	10694292	3L_10694292_SNP [dm3] 3L_10701192_SNP [dm6]	G	C	2.628e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21276634	3R_21276634_SNP [dm3] 3R_25450912_SNP [dm6]	C	T	2.639e^-4	0.978	INTRON Fur1
X	12929483	X_12929483_SNP [dm3] X_13035450_SNP [dm6]	C	A	2.639e^-4	0.978	INTRON rad
2R	17933058	2R_17933058_SNP [dm3] 2R_22045553_SNP [dm6]	T	C	2.647e^-4	0.978	INTERGENIC
2R	15697740	2R_15697740_SNP [dm3] 2R_19810235_SNP [dm6]	T	G	2.660e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8696998	2L_8696998_SNP [dm3] 2L_8696998_SNP [dm6]	C	G	2.660e^-4	0.978	INTRON Hnf4	TF binding site mE1_TFBS_cnc
3L	9508978	3L_9508978_SNP [dm3] 3L_9515878_SNP [dm6]	A	T	2.662e^-4	0.978	INTRON CG33700
3R	25779128	3R_25779128_SNP [dm3] 3R_29953406_SNP [dm6]	G	A	2.664e^-4	0.978	SYNONYMOUS_CODING TkR99D
X	6216233	X_6216233_SNP [dm3] X_6322200_SNP [dm6]	A	T	2.672e^-4	0.978	INTRON CG15894
3L	9367062	3L_9367062_SNP [dm3] 3L_9373962_SNP [dm6]	C	T	2.676e^-4	0.978	UTR_5_PRIME Hsp22 UTR_3_PRIME Hsp67Bb UPSTREAM Hsp22 DOWNSTREAM Hsp67Bb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
X	15135579	X_15135579_DEL [dm3] X_15241546_DEL [dm6]	ATA	A	2.680e^-4	0.978	INTERGENIC
2L	4934000	2L_4934000_SNP [dm3] 2L_4934000_SNP [dm6]	A	T	2.687e^-4	0.978	INTRON hoe2
2R	11530566	2R_11530566_SNP [dm3] 2R_15643061_SNP [dm6]	T	C	2.691e^-4	0.978	INTRON CG42524
2L	10752188	2L_10752188_SNP [dm3] 2L_10752188_SNP [dm6]	A	G	2.696e^-4	0.978	INTRON CG17124	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	11530467	2R_11530467_SNP [dm3] 2R_15642962_SNP [dm6]	T	A	2.706e^-4	0.978	INTRON CG42524
3L	10694223	3L_10694223_SNP [dm3] 3L_10701123_SNP [dm6]	C	A	2.710e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	15135576	X_15135576_SNP [dm3] X_15241543_SNP [dm6]	T	G	2.720e^-4	0.978	INTERGENIC
2R	17122056	2R_17122056_SNP [dm3] 2R_21234551_SNP [dm6]	C	T	2.721e^-4	0.978	INTRON ASPP
X	14042378	X_14042378_SNP [dm3] X_14148345_SNP [dm6]	T	G	2.728e^-4	0.978	INTERGENIC
3R	5362593	3R_5362593_SNP [dm3] 3R_9536871_SNP [dm6]	C	T	2.739e^-4	0.978	UTR_3_PRIME mura
2R	7407831	2R_7407831_SNP [dm3] 2R_11520326_SNP [dm6]	A	T	2.743e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_cad
3R	3208928	3R_3208928_SNP [dm3] 3R_7383206_SNP [dm6]	C	A	2.746e^-4	0.978	INTERGENIC
3L	1561176	3L_1561176_SNP [dm3] 3L_1561176_SNP [dm6]	C	T	2.747e^-4	0.978	SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	16864219	2R_16864219_SNP [dm3] 2R_20976714_SNP [dm6]	G	A	2.751e^-4	0.978	UPSTREAM CG9344 DOWNSTREAM CG15650 INTRON CG34115	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	12845768	X_12845768_SNP [dm3] X_12951735_SNP [dm6]	T	C	2.767e^-4	0.978	INTRON hec
X	4865897	X_4865897_INS [dm3] X_4971864_INS [dm6]	A	AGGACC	2.769e^-4	0.978	INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	11722955	2R_11722955_SNP [dm3] 2R_15835450_SNP [dm6]	G	A	2.777e^-4	0.978	UPSTREAM Poxn INTRON tun	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3L	1582576	3L_1582576_SNP [dm3] 3L_1582576_SNP [dm6]	A	G	2.778e^-4	0.978	INTRON CG13917	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	7894419	3L_7894419_SNP [dm3] 3L_7901319_SNP [dm6]	T	C	2.785e^-4	0.978	SYNONYMOUS_CODING pbl INTRON pbl
2R	17725920	2R_17725920_SNP [dm3] 2R_21838415_SNP [dm6]	C	T	2.785e^-4	0.978	SYNONYMOUS_CODING CG4372
X	3172280	X_3172280_SNP [dm3] X_3278247_SNP [dm6]	T	G	2.796e^-4	0.978	INTRON dnc
2R	16265606	2R_16265606_SNP [dm3] 2R_20378101_SNP [dm6]	C	A	2.812e^-4	0.978	INTERGENIC
3R	15200655	3R_15200655_SNP [dm3] 3R_19374933_SNP [dm6]	G	C	2.831e^-4	0.978	UPSTREAM CG3581 DOWNSTREAM CG31404 INTRON Ino80
3L	5884782	3L_5884782_SNP [dm3] 3L_5891682_SNP [dm6]	G	T	2.839e^-4	0.978	INTERGENIC
3L	14421261	3L_14421261_SNP [dm3] 3L_14428161_SNP [dm6]	G	C	2.840e^-4	0.978	UPSTREAM bbg INTRON bbg
3R	26476642	3R_26476642_SNP [dm3] 3R_30650920_SNP [dm6]	C	T	2.845e^-4	0.978	DOWNSTREAM CG34433 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1908295	3L_1908295_SNP [dm3] 3L_1908295_SNP [dm6]	A	G	2.857e^-4	0.978	INTRON CG1887
3R	21990412	3R_21990412_SNP [dm3] 3R_26164690_SNP [dm6]	G	C	2.880e^-4	0.978	INTERGENIC
3R	6105630	3R_6105630_SNP [dm3] 3R_10279908_SNP [dm6]	T	A	2.885e^-4	0.978	INTRON CG43143
X	14475572	X_14475572_SNP [dm3] X_14581539_SNP [dm6]	T	C	2.886e^-4	0.978	DOWNSTREAM mRpS25 INTRON CG14414	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8370131	2L_8370131_SNP [dm3] 2L_8370131_SNP [dm6]	T	A	2.888e^-4	0.978	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
3L	15234226	3L_15234226_DEL [dm3] 3L_15241126_DEL [dm6]	TTTATTTT	T	2.891e^-4	0.978	UTR_3_PRIME Tollo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5150023	2L_5150023_SNP [dm3] 2L_5150023_SNP [dm6]	G	C	2.892e^-4	0.978	INTRON Msp300
3L	12630201	3L_12630201_SNP [dm3] 3L_12637101_SNP [dm6]	G	A	2.900e^-4	0.978	INTRON CR32111
2L	13806809	2L_13806809_SNP [dm3] 2L_13806809_SNP [dm6]	T	C	2.902e^-4	0.978	INTRON CAH1
2L	19506514	2L_19506514_SNP [dm3] 2L_19506514_SNP [dm6]	C	G	2.911e^-4	0.978	INTRON CG10188
X	6643040	X_6643040_SNP [dm3] X_6749007_SNP [dm6]	A	T	2.915e^-4	0.978	UPSTREAM CR44964 INTRON CG14439
2L	2669602	2L_2669602_SNP [dm3] 2L_2669602_SNP [dm6]	G	T	2.919e^-4	0.978	UPSTREAM Gr23a INTERGENIC
3L	4839460	3L_4839460_SNP [dm3] 3L_4839460_SNP [dm6]	A	G	2.921e^-4	0.978	UTR_5_PRIME CG13707 INTRON CG13707
2L	414406	2L_414406_SNP [dm3] 2L_414406_SNP [dm6]	T	A	2.922e^-4	0.978	UPSTREAM ebi INTRON AP-2alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	21058687	2R_21058687_INS [dm3] 2R_25171164_INS [dm6]	C	CGTGCGAAAC	2.923e^-4	0.978	INTERGENIC
2L	15192354	2L_15192354_SNP [dm3] 2L_15192354_SNP [dm6]	C	T	2.929e^-4	0.978	INTRON CG4168
X	12929532	X_12929532_SNP [dm3] X_13035499_SNP [dm6]	G	A	2.931e^-4	0.978	INTRON rad
2R	13231432	2R_13231432_SNP [dm3] 2R_17343927_SNP [dm6]	C	T	2.932e^-4	0.978	INTRON mbl
3L	2645081	3L_2645081_SNP [dm3] 3L_2645081_SNP [dm6]	A	G	2.933e^-4	0.978	UPSTREAM CG1143 INTERGENIC
3L	19495062	3L_19495062_SNP [dm3] 3L_19501962_SNP [dm6]	T	A	2.937e^-4	0.978	SYNONYMOUS_CODING CG9452
2L	8370098	2L_8370098_SNP [dm3] 2L_8370098_SNP [dm6]	A	T	2.937e^-4	0.978	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
3L	10694245	3L_10694245_SNP [dm3] 3L_10701145_SNP [dm6]	G	A	2.944e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	15200653	3R_15200653_SNP [dm3] 3R_19374931_SNP [dm6]	A	T	2.945e^-4	0.978	UPSTREAM CG3581 DOWNSTREAM CG31404 INTRON Ino80
3R	2849733	3R_2849733_SNP [dm3] 3R_7024011_SNP [dm6]	G	T	2.962e^-4	0.978	INTERGENIC
X	9497112	X_9497112_SNP [dm3] X_9603079_SNP [dm6]	G	A	2.965e^-4	0.978	SYNONYMOUS_CODING Gga	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18872033	2L_18872033_SNP [dm3] 2L_18872033_SNP [dm6]	T	A	2.966e^-4	0.978	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15126711	2L_15126711_SNP [dm3] 2L_15126711_SNP [dm6]	A	G	2.966e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	3137949	X_3137949_INS [dm3] X_3243916_INS [dm6]	A	AAAGATA	2.967e^-4	0.978	DOWNSTREAM ng1 & 1 other INTRON dnc
2L	4147795	2L_4147795_SNP [dm3] 2L_4147795_SNP [dm6]	G	C	2.981e^-4	0.978	INTERGENIC
3R	6105689	3R_6105689_SNP [dm3] 3R_10279967_SNP [dm6]	G	A	2.990e^-4	0.978	INTRON CG43143
X	17014026	X_17014026_SNP [dm3] X_17119993_SNP [dm6]	C	T	2.994e^-4	0.978	INTRON CG5004
2L	4364346	2L_4364346_SNP [dm3] 2L_4364346_SNP [dm6]	C	T	3.001e^-4	0.978	UPSTREAM CR45363 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	20218412	X_20218412_SNP [dm3] X_20347385_SNP [dm6]	T	A	3.009e^-4	0.978	INTERGENIC
2R	8137681	2R_8137681_SNP [dm3] 2R_12250176_SNP [dm6]	A	C	3.011e^-4	0.978	INTERGENIC
2R	14451040	2R_14451040_SNP [dm3] 2R_18563535_SNP [dm6]	A	G	3.020e^-4	0.978	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14182721	X_14182721_SNP [dm3] X_14288688_SNP [dm6]	A	T	3.020e^-4	0.978	DOWNSTREAM Muc12Ea INTRON CG9400	TF binding site mE1_TFBS_HSA
3L	8797746	3L_8797746_SNP [dm3] 3L_8804646_SNP [dm6]	G	C	3.029e^-4	0.978	UPSTREAM CG34427 & 1 other INTERGENIC
2R	16869835	2R_16869835_SNP [dm3] 2R_20982330_SNP [dm6]	C	T	3.032e^-4	0.978	SYNONYMOUS_CODING CG9313	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9131354	2R_9131354_SNP [dm3] 2R_13243849_SNP [dm6]	G	A	3.034e^-4	0.978	DOWNSTREAM CR45278 INTERGENIC
2L	9485629	2L_9485629_SNP [dm3] 2L_9485629_SNP [dm6]	G	A	3.053e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8292916	X_8292916_SNP [dm3] X_8398883_SNP [dm6]	C	G	3.069e^-4	0.978	UPSTREAM CG10555 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8536390	X_8536390_SNP [dm3] X_8642357_SNP [dm6]	A	T	3.071e^-4	0.978	INTRON oc	TF binding site BDTNP1_TFBS_dl
2L	19715538	2L_19715538_SNP [dm3] 2L_19715538_SNP [dm6]	T	A	3.072e^-4	0.978	INTRON Lar	TF binding site BDTNP1_TFBS_sna
2R	13200879	2R_13200879_SNP [dm3] 2R_17313374_SNP [dm6]	T	G	3.079e^-4	0.978	INTRON mbl
X	16052796	X_16052796_SNP [dm3] X_16158763_SNP [dm6]	C	T	3.087e^-4	0.978	INTERGENIC
2L	13863269	2L_13863269_SNP [dm3] 2L_13863269_SNP [dm6]	G	C	3.087e^-4	0.978	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	16823020	3L_16823020_DEL [dm3] 3L_16829920_DEL [dm6]	TGCAGTTTTGCAAT...	T	3.088e^-4	0.978	UPSTREAM CG13024 INTERGENIC
2R	13242811	2R_13242811_SNP [dm3] 2R_17355306_SNP [dm6]	T	A	3.089e^-4	0.978	INTRON mbl
X	19400503	X_19400503_SNP [dm3] X_19506470_SNP [dm6]	A	T	3.093e^-4	0.978	UTR_5_PRIME Pfrx INTRON Pfrx & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	12021536	X_12021536_DEL [dm3] X_12127503_DEL [dm6]	TCT	T	3.103e^-4	0.978	UPSTREAM Ten-a INTRON Ten-a
2L	5496684	2L_5496684_SNP [dm3] 2L_5496684_SNP [dm6]	A	G	3.110e^-4	0.978	INTERGENIC
3L	16337635	3L_16337635_SNP [dm3] 3L_16344535_SNP [dm6]	G	A	3.111e^-4	0.978	NON_SYNONYMOUS_CODING CG4998	TF binding site mE1_TFBS_cad
X	4138181	X_4138181_SNP [dm3] X_4244148_SNP [dm6]	T	G	3.111e^-4	0.978	UTR_3_PRIME Muc4B
2L	11849745	2L_11849745_SNP [dm3] 2L_11849745_SNP [dm6]	G	A	3.118e^-4	0.978	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
3R	2867864	3R_2867864_SNP [dm3] 3R_7042142_SNP [dm6]	A	C	3.122e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4950263	3L_4950263_SNP [dm3] 3L_4950263_SNP [dm6]	C	T	3.123e^-4	0.978	INTRON Con	TF binding site mE1_TFBS_chinmo
2L	10083108	2L_10083108_SNP [dm3] 2L_10083108_SNP [dm6]	A	T	3.129e^-4	0.978	INTRON CG44153
2L	402187	2L_402187_SNP [dm3] 2L_402187_SNP [dm6]	G	A	3.141e^-4	0.978	START_GAINED CG4213 UTR_5_PRIME CG4213 UPSTREAM CG4213	TF binding site mE1_TFBS_Trl
X	12845741	X_12845741_SNP [dm3] X_12951708_SNP [dm6]	G	T	3.148e^-4	0.978	INTRON hec
2R	13242775	2R_13242775_SNP [dm3] 2R_17355270_SNP [dm6]	A	C	3.163e^-4	0.978	INTRON mbl
X	12021524	X_12021524_SNP [dm3] X_12127491_SNP [dm6]	T	C	3.164e^-4	0.978	UPSTREAM Ten-a INTRON Ten-a
3L	2173108	3L_2173108_SNP [dm3] 3L_2173108_SNP [dm6]	C	T	3.166e^-4	0.978	NON_SYNONYMOUS_CODING CG15820 UPSTREAM CR15821	TF binding site mE1_TFBS_cad
3L	1903346	3L_1903346_SNP [dm3] 3L_1903346_SNP [dm6]	T	A	3.172e^-4	0.978	INTRON CG1887
2R	17785026	2R_17785026_SNP [dm3] 2R_21897521_SNP [dm6]	G	A	3.177e^-4	0.978	INTRON Fili
2R	20214765	2R_20214765_SNP [dm3] 2R_24327242_SNP [dm6]	C	A	3.179e^-4	0.978	INTRON CR44810
3R	5147293	3R_5147293_SNP [dm3] 3R_9321571_SNP [dm6]	G	C	3.193e^-4	0.978	UPSTREAM HP1e INTRON CG8861	TF binding site mE1_TFBS_HSA
2L	7207464	2L_7207464_SNP [dm3] 2L_7207464_SNP [dm6]	A	T	3.194e^-4	0.978	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784
X	4137954	X_4137954_SNP [dm3] X_4243921_SNP [dm6]	A	T	3.207e^-4	0.978	DOWNSTREAM Muc4B INTERGENIC
3L	1042781	3L_1042781_SNP [dm3] 3L_1042781_SNP [dm6]	T	C	3.223e^-4	0.978	INTRON bab1
X	16222227	X_16222227_SNP [dm3] X_16328194_SNP [dm6]	C	T	3.233e^-4	0.978	UTR_3_PRIME CalpC DOWNSTREAM CG9919
3L	1103387	3L_1103387_SNP [dm3] 3L_1103387_SNP [dm6]	C	T	3.243e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	3239859	2R_3239859_SNP [dm3] 2R_7352354_SNP [dm6]	T	A	3.251e^-4	0.978	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14561076	3L_14561076_SNP [dm3] 3L_14567976_SNP [dm6]	T	C	3.251e^-4	0.978	SYNONYMOUS_CODING CG42758
3R	10364938	3R_10364938_SNP [dm3] 3R_14539216_SNP [dm6]	G	T	3.258e^-4	0.978	INTRON Pde6
3L	2645600	3L_2645600_SNP [dm3] 3L_2645600_SNP [dm6]	A	T	3.262e^-4	0.978	INTRON CG1143	TF binding site mE1_TFBS_cad
2L	19715501	2L_19715501_SNP [dm3] 2L_19715501_SNP [dm6]	C	T	3.263e^-4	0.978	INTRON Lar	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2R	14210951	2R_14210951_SNP [dm3] 2R_18323446_SNP [dm6]	A	G	3.286e^-4	0.978	INTRON sbb	TF binding site BDTNP1_TFBS_twi
2R	5234075	2R_5234075_SNP [dm3] 2R_9346570_SNP [dm6]	T	G	3.290e^-4	0.978	SYNONYMOUS_CODING Or45a INTRON CG13954 & 1 other	TF binding site mE1_TFBS_chinmo
X	4137915	X_4137915_SNP [dm3] X_4243882_SNP [dm6]	A	C	3.294e^-4	0.978	DOWNSTREAM Muc4B INTERGENIC
X	4557751	X_4557751_SNP [dm3] X_4663718_SNP [dm6]	G	A	3.295e^-4	0.978	INTRON CG3009
X	12845770	X_12845770_SNP [dm3] X_12951737_SNP [dm6]	T	C	3.297e^-4	0.978	INTRON hec
2R	6670604	2R_6670604_INS [dm3] 2R_10783099_INS [dm6]	T	TT	3.298e^-4	0.978	UPSTREAM CG33144 INTRON CG33144 EXON CR44299	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	5782166	3L_5782166_SNP [dm3] 3L_5789066_SNP [dm6]	C	G	3.303e^-4	0.978	DOWNSTREAM Bre1 INTERGENIC
3L	4545925	3L_4545925_SNP [dm3] 3L_4545925_SNP [dm6]	C	A	3.305e^-4	0.978	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13553816	3L_13553816_DEL [dm3] 3L_13560716_DEL [dm6]	GTCGACGTAGCGACACT...	G	3.306e^-4	0.978	INTRON bru-3
3R	3156248	3R_3156248_SNP [dm3] 3R_7330526_SNP [dm6]	A	T	3.312e^-4	0.978	UPSTREAM CR44337 INTERGENIC
3R	20225930	3R_20225930_SNP [dm3] 3R_24400208_SNP [dm6]	C	G	3.325e^-4	0.978	UTR_3_PRIME nAChRalpha1 DOWNSTREAM nAChRalpha1
2L	11222229	2L_11222229_INS [dm3] 2L_11222229_INS [dm6]	A	ATGATA	3.328e^-4	0.978	INTRON ab	TF binding site BDTNP1_TFBS_dl
2L	2614946	2L_2614946_SNP [dm3] 2L_2614946_SNP [dm6]	A	G	3.329e^-4	0.978	INTERGENIC
3L	20746122	3L_20746122_SNP [dm3] 3L_20753022_SNP [dm6]	C	A	3.329e^-4	0.978	INTERGENIC
2L	12137992	2L_12137992_SNP [dm3] 2L_12137992_SNP [dm6]	G	A	3.336e^-4	0.978	UPSTREAM Gr33a INTERGENIC
3L	2202386	3L_2202386_SNP [dm3] 3L_2202386_SNP [dm6]	T	C	3.341e^-4	0.978	INTERGENIC
3R	25081773	3R_25081773_SNP [dm3] 3R_29256051_SNP [dm6]	T	C	3.343e^-4	0.978	UPSTREAM stg & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2L	357751	2L_357751_SNP [dm3] 2L_357751_SNP [dm6]	G	C	3.344e^-4	0.978	SPLICE_SITE_REGION Ent1 UTR_5_PRIME Ent1 DOWNSTREAM CR45367 INTRON Ent1 EXON CR45366	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	15115840	3L_15115840_SNP [dm3] 3L_15122740_SNP [dm6]	G	A	3.349e^-4	0.978	SYNONYMOUS_CODING CG16959 DOWNSTREAM CG32847 INTRON Cep135
2L	4291057	2L_4291057_SNP [dm3] 2L_4291057_SNP [dm6]	C	T	3.355e^-4	0.978	INTRON tutl
3L	741724	3L_741724_INS [dm3] 3L_741724_INS [dm6]	C	CGC	3.360e^-4	0.978	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	7202015	2L_7202015_SNP [dm3] 2L_7202015_SNP [dm6]	C	A	3.366e^-4	0.978	INTRON CG4502
3L	2173094	3L_2173094_SNP [dm3] 3L_2173094_SNP [dm6]	T	C	3.392e^-4	0.978	SYNONYMOUS_CODING CG15820 UPSTREAM CR15821	TF binding site mE1_TFBS_cad
X	10314241	X_10314241_INS [dm3] X_10420208_INS [dm6]	G	GGCTTTTTCCTGATCC...	3.392e^-4	0.978	INTRON CG32683
2L	3127602	2L_3127602_SNP [dm3] 2L_3127602_SNP [dm6]	G	A	3.393e^-4	0.978	SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10435085	3R_10435085_SNP [dm3] 3R_14609363_SNP [dm6]	G	T	3.399e^-4	0.978	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14197974	3L_14197974_SNP [dm3] 3L_14204874_SNP [dm6]	C	T	3.404e^-4	0.978	UPSTREAM nuf DOWNSTREAM CG32141 INTRON nuf	TF binding site BDTNP1_TFBS_dl
2R	12681083	2R_12681083_SNP [dm3] 2R_16793578_SNP [dm6]	G	C	3.409e^-4	0.978	SYNONYMOUS_CODING CG15615 DOWNSTREAM CG15919
2L	21866518	2L_21866518_SNP [dm3] 2L_21866518_SNP [dm6]	A	G	3.412e^-4	0.978	UPSTREAM CR44917 & 1 other DOWNSTREAM CR44919 INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1903278	3L_1903278_SNP [dm3] 3L_1903278_SNP [dm6]	A	G	3.415e^-4	0.978	INTRON CG1887
2L	13040058	2L_13040058_SNP [dm3] 2L_13040058_SNP [dm6]	C	A	3.417e^-4	0.978	INTRON CG9932
3L	2172991	3L_2172991_SNP [dm3] 3L_2172991_SNP [dm6]	G	A	3.418e^-4	0.978	UPSTREAM CR15821 DOWNSTREAM CG15820 INTERGENIC	TF binding site mE1_TFBS_cad
2R	12595206	2R_12595206_SNP [dm3] 2R_16707701_SNP [dm6]	T	G	3.429e^-4	0.978	INTRON CG30463
2R	8921648	2R_8921648_SNP [dm3] 2R_13034143_SNP [dm6]	G	A	3.431e^-4	0.978	INTERGENIC
3L	16164508	3L_16164508_SNP [dm3] 3L_16171408_SNP [dm6]	G	A	3.433e^-4	0.978	UPSTREAM CG33795 INTERGENIC
3L	16164516	3L_16164516_SNP [dm3] 3L_16171416_SNP [dm6]	A	G	3.433e^-4	0.978	UPSTREAM CG33795 INTERGENIC
3L	2646601	3L_2646601_SNP [dm3] 3L_2646601_SNP [dm6]	T	C	3.435e^-4	0.978	UTR_3_PRIME CG1143	TF binding site mE1_TFBS_cad
2R	13621707	2R_13621707_SNP [dm3] 2R_17734202_SNP [dm6]	A	G	3.437e^-4	0.978	SYNONYMOUS_CODING CG34195 DOWNSTREAM CG6406	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	14010446	X_14010446_INS [dm3] X_14116413_INS [dm6]	T	TT	3.441e^-4	0.978	EXON CR44657	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14437847	3L_14437847_SNP [dm3] 3L_14444747_SNP [dm6]	T	C	3.444e^-4	0.978	INTRON bbg	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	14854515	X_14854515_SNP [dm3] X_14960482_SNP [dm6]	A	T	3.446e^-4	0.978	INTRON eag	TF binding site mE1_TFBS_bab1
2L	11849848	2L_11849848_SNP [dm3] 2L_11849848_SNP [dm6]	A	T	3.455e^-4	0.978	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
2L	3752133	2L_3752133_SNP [dm3] 2L_3752133_SNP [dm6]	A	G	3.464e^-4	0.978	SYNONYMOUS_CODING CG10019
3R	18018013	3R_18018013_SNP [dm3] 3R_22192291_SNP [dm6]	A	G	3.470e^-4	0.978	INTRON SKIP
3L	2173096	3L_2173096_SNP [dm3] 3L_2173096_SNP [dm6]	G	C	3.475e^-4	0.978	NON_SYNONYMOUS_CODING CG15820 UPSTREAM CR15821	TF binding site mE1_TFBS_cad
3R	2868309	3R_2868309_SNP [dm3] 3R_7042587_SNP [dm6]	G	A	3.475e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	14154318	X_14154318_SNP [dm3] X_14260285_SNP [dm6]	T	G	3.490e^-4	0.978	UPSTREAM CG1461 INTERGENIC
2L	7001031	2L_7001031_SNP [dm3] 2L_7001031_SNP [dm6]	A	T	3.510e^-4	0.978	INTRON uif
3L	14816604	3L_14816604_SNP [dm3] 3L_14823504_SNP [dm6]	A	G	3.513e^-4	0.978	INTRON CG17839
3R	10573746	3R_10573746_SNP [dm3] 3R_14748024_SNP [dm6]	A	G	3.514e^-4	0.978	UPSTREAM smp-30 INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2L	16553993	2L_16553993_SNP [dm3] 2L_16553993_SNP [dm6]	G	C	3.514e^-4	0.978	INTRON CG42389
3L	11791042	3L_11791042_SNP [dm3] 3L_11797942_SNP [dm6]	A	G	3.515e^-4	0.978	SYNONYMOUS_CODING Klp68D	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	4710020	3R_4710020_SNP [dm3] 3R_8884298_SNP [dm6]	G	C	3.524e^-4	0.978	INTRON pyd	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	11849725	2L_11849725_SNP [dm3] 2L_11849725_SNP [dm6]	A	G	3.534e^-4	0.978	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
3L	7887500	3L_7887500_SNP [dm3] 3L_7894400_SNP [dm6]	C	T	3.549e^-4	0.978	NON_SYNONYMOUS_CODING CG32365 UPSTREAM eIF4E-5	TF binding site mE1_TFBS_cad
2L	8986534	2L_8986534_SNP [dm3] 2L_8986534_SNP [dm6]	A	C	3.553e^-4	0.978	INTRON rost
2R	11567861	2R_11567861_SNP [dm3] 2R_15680356_SNP [dm6]	C	A	3.555e^-4	0.978	UPSTREAM CG30091 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	21444159	3R_21444159_SNP [dm3] 3R_25618437_SNP [dm6]	T	C	3.560e^-4	0.978	UTR_5_PRIME CG5071 INTRON Npl4
3L	2645044	3L_2645044_SNP [dm3] 3L_2645044_SNP [dm6]	T	G	3.567e^-4	0.978	UPSTREAM CG1143 INTERGENIC
3R	12383428	3R_12383428_SNP [dm3] 3R_16557706_SNP [dm6]	G	T	3.570e^-4	0.978	INTRON CG42342
X	5271952	X_5271952_SNP [dm3] X_5377919_SNP [dm6]	G	T	3.574e^-4	0.978	INTRON SK	TF binding site mE1_TFBS_inv
2L	12415089	2L_12415089_SNP [dm3] 2L_12415089_SNP [dm6]	G	A	3.588e^-4	0.978	INTRON vir-1
2R	17943852	2R_17943852_SNP [dm3] 2R_22056347_SNP [dm6]	G	C	3.590e^-4	0.978	DOWNSTREAM CG13500 INTERGENIC
3L	5904291	3L_5904291_INS [dm3] 3L_5911191_INS [dm6]	T	TATGT	3.591e^-4	0.978	INTRON CG13288
X	12960117	X_12960117_SNP [dm3] X_13066084_SNP [dm6]	A	G	3.604e^-4	0.978	INTRON rad
2L	9427038	2L_9427038_SNP [dm3] 2L_9427038_SNP [dm6]	G	C	3.605e^-4	0.978	NON_SYNONYMOUS_CODING Fbp2 UPSTREAM CG42847 DOWNSTREAM Mco1
2L	9427154	2L_9427154_SNP [dm3] 2L_9427154_SNP [dm6]	G	A	3.605e^-4	0.978	NON_SYNONYMOUS_CODING Fbp2 UPSTREAM CG42847 DOWNSTREAM Mco1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9427486	2L_9427486_SNP [dm3] 2L_9427486_SNP [dm6]	C	T	3.605e^-4	0.978	SYNONYMOUS_CODING Fbp2 UPSTREAM CG42847
2L	9428810	2L_9428810_SNP [dm3] 2L_9428810_SNP [dm6]	T	G	3.605e^-4	0.978	UTR_3_PRIME FucTB DOWNSTREAM Fbp2 & 1 other
2L	9430958	2L_9430958_SNP [dm3] 2L_9430958_SNP [dm6]	A	T	3.605e^-4	0.978	UTR_5_PRIME FucTB UPSTREAM FucTB & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12260510	2L_12260510_SNP [dm3] 2L_12260510_SNP [dm6]	T	C	3.607e^-4	0.978	INTRON aret
2L	588413	2L_588413_SNP [dm3] 2L_588413_SNP [dm6]	T	C	3.612e^-4	0.978	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
3L	9735039	3L_9735039_SNP [dm3] 3L_9741939_SNP [dm6]	A	T	3.616e^-4	0.978	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	3265646	2R_3265646_SNP [dm3] 2R_7378141_SNP [dm6]	G	C	3.628e^-4	0.978	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
2L	7701038	2L_7701038_SNP [dm3] 2L_7701038_SNP [dm6]	A	C	3.636e^-4	0.978	INTRON Tep2	TF binding site mE1_TFBS_Trl
X	3380537	X_3380537_SNP [dm3] X_3486504_SNP [dm6]	A	G	3.640e^-4	0.978	NON_SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_sens
3L	3143755	3L_3143755_INS [dm3] 3L_3143755_INS [dm6]	T	TT	3.640e^-4	0.978	UPSTREAM CG1291 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	5233844	2R_5233844_SNP [dm3] 2R_9346339_SNP [dm6]	A	C	3.642e^-4	0.978	SYNONYMOUS_CODING Or45a INTRON CG13954 & 1 other	TF binding site mE1_TFBS_chinmo
2R	3265694	2R_3265694_SNP [dm3] 2R_7378189_SNP [dm6]	C	T	3.645e^-4	0.978	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
3L	3680402	3L_3680402_SNP [dm3] 3L_3680402_SNP [dm6]	T	C	3.646e^-4	0.978	INTERGENIC
X	12021542	X_12021542_SNP [dm3] X_12127509_SNP [dm6]	T	G	3.647e^-4	0.978	UPSTREAM Ten-a INTRON Ten-a
2L	4144530	2L_4144530_SNP [dm3] 2L_4144530_SNP [dm6]	G	A	3.665e^-4	0.978	INTERGENIC
3R	21677068	3R_21677068_SNP [dm3] 3R_25851346_SNP [dm6]	T	C	3.678e^-4	0.978	UPSTREAM CG5886 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	20732890	3L_20732890_SNP [dm3] 3L_20739790_SNP [dm6]	T	C	3.682e^-4	0.978	UPSTREAM Gr77a INTRON CG13252
3L	2644859	3L_2644859_SNP [dm3] 3L_2644859_SNP [dm6]	C	T	3.682e^-4	0.978	UPSTREAM CG1143 INTERGENIC
3L	1908283	3L_1908283_SNP [dm3] 3L_1908283_SNP [dm6]	T	G	3.689e^-4	0.978	INTRON CG1887
2L	18391734	2L_18391734_SNP [dm3] 2L_18391734_SNP [dm6]	T	C	3.700e^-4	0.978	INTRON Fas3
3R	25758889	3R_25758889_INS [dm3] 3R_29933167_INS [dm6]	G	GTTCT	3.704e^-4	0.978	UPSTREAM CG42557 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	17347034	3R_17347034_SNP [dm3] 3R_21521312_SNP [dm6]	G	T	3.707e^-4	0.978	INTRON CG7956	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	6483164	2R_6483164_SNP [dm3] 2R_10595659_SNP [dm6]	T	C	3.723e^-4	0.978	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
2R	6798005	2R_6798005_SNP [dm3] 2R_10910500_SNP [dm6]	C	T	3.731e^-4	0.978	DOWNSTREAM Obp47a INTERGENIC
3R	11982358	3R_11982358_SNP [dm3] 3R_16156636_SNP [dm6]	A	G	3.739e^-4	0.978	INTRON CG6006
2R	12678631	2R_12678631_SNP [dm3] 2R_16791126_SNP [dm6]	G	A	3.751e^-4	0.978	SYNONYMOUS_CODING CG5522	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	10654540	2R_10654540_SNP [dm3] 2R_14767035_SNP [dm6]	T	A	3.760e^-4	0.978	INTRON Spred
2L	9430549	2L_9430549_SNP [dm3] 2L_9430549_SNP [dm6]	A	C	3.761e^-4	0.978	UPSTREAM FucTB & 1 other INTRON FucTB
3L	2172626	3L_2172626_SNP [dm3] 3L_2172626_SNP [dm6]	G	A	3.764e^-4	0.978	DOWNSTREAM CG15820 EXON CR15821
2L	9430078	2L_9430078_SNP [dm3] 2L_9430078_SNP [dm6]	G	A	3.778e^-4	0.978	NON_SYNONYMOUS_CODING FucTB UPSTREAM FucTB	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16791323	X_16791323_SNP [dm3] X_16897290_SNP [dm6]	A	T	3.783e^-4	0.978	UPSTREAM CG33252 INTERGENIC
3R	26618196	3R_26618196_SNP [dm3] 3R_30792474_SNP [dm6]	C	T	3.787e^-4	0.978	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
X	14183552	X_14183552_SNP [dm3] X_14289519_SNP [dm6]	T	A	3.790e^-4	0.978	UPSTREAM CG9400 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	18487687	2L_18487687_SNP [dm3] 2L_18487687_SNP [dm6]	A	T	3.790e^-4	0.978	UTR_3_PRIME CG10176 DOWNSTREAM kon	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
2L	3126389	2L_3126389_SNP [dm3] 2L_3126389_SNP [dm6]	C	T	3.793e^-4	0.978	NON_SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	9428316	2L_9428316_SNP [dm3] 2L_9428316_SNP [dm6]	A	C	3.793e^-4	0.978	SYNONYMOUS_CODING CG42847 DOWNSTREAM FucTB & 1 other
X	2253302	X_2253302_SNP [dm3] X_2359269_SNP [dm6]	A	T	3.798e^-4	0.978	INTRON ptr
3L	10842862	3L_10842862_SNP [dm3] 3L_10849762_SNP [dm6]	T	C	3.803e^-4	0.978	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	8862122	2R_8862122_SNP [dm3] 2R_12974617_SNP [dm6]	G	A	3.805e^-4	0.978	INTRON Psc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19315420	X_19315420_DEL [dm3] X_19421387_DEL [dm6]	CATACATATATGTGT...	C	3.814e^-4	0.978	INTRON kek5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2643078	3L_2643078_SNP [dm3] 3L_2643078_SNP [dm6]	A	T	3.823e^-4	0.978	INTRON CG14949
X	6058670	X_6058670_SNP [dm3] X_6164637_SNP [dm6]	A	T	3.829e^-4	0.978	INTRON Ca-alpha1T
3R	21990600	3R_21990600_SNP [dm3] 3R_26164878_SNP [dm6]	G	T	3.834e^-4	0.978	INTERGENIC
3L	10311674	3L_10311674_SNP [dm3] 3L_10318574_SNP [dm6]	A	T	3.839e^-4	0.978	INTERGENIC
2L	17861790	2L_17861790_DEL [dm3] 2L_17861790_DEL [dm6]	AA	A	3.842e^-4	0.978	INTRON CadN2
2L	18376210	2L_18376210_SNP [dm3] 2L_18376210_SNP [dm6]	C	T	3.844e^-4	0.978	INTRON Fas3
3L	18662988	3L_18662988_INS [dm3] 3L_18669888_INS [dm6]	G	GCTG	3.844e^-4	0.978	CODON_INSERTION Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
X	14035974	X_14035974_DEL [dm3] X_14141941_DEL [dm6]	TT	T	3.852e^-4	0.978	EXON CR44658
2L	2831221	2L_2831221_SNP [dm3] 2L_2831221_SNP [dm6]	A	G	3.853e^-4	0.978	UPSTREAM Duox INTERGENIC	TF binding site mE1_TFBS_Trl
2R	3254555	2R_3254555_SNP [dm3] 2R_7367050_SNP [dm6]	T	A	3.860e^-4	0.978	INTRON Dscam1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6253304	3R_6253304_SNP [dm3] 3R_10427582_SNP [dm6]	C	A	3.869e^-4	0.978	INTERGENIC
2R	16143864	2R_16143864_SNP [dm3] 2R_20256359_SNP [dm6]	A	G	3.881e^-4	0.978	INTRON Ate1	TF binding site mE1_TFBS_cad
3L	21600286	3L_21600286_INS [dm3] 3L_21607186_INS [dm6]	C	CACCTATGTTC...	3.888e^-4	0.978	UPSTREAM TfAP-2 INTRON TfAP-2
3R	15263482	3R_15263482_SNP [dm3] 3R_19437760_SNP [dm6]	T	C	3.894e^-4	0.978	INTRON CG31221
X	6058687	X_6058687_SNP [dm3] X_6164654_SNP [dm6]	A	G	3.914e^-4	0.978	INTRON Ca-alpha1T
2L	22297776	2L_22297776_SNP [dm3] 2L_22297776_SNP [dm6]	G	A	3.946e^-4	0.978	INTERGENIC	transposable element FlyBase
3L	14392067	3L_14392067_SNP [dm3] 3L_14398967_SNP [dm6]	T	A	3.953e^-4	0.978	INTERGENIC
2R	12282058	2R_12282058_SNP [dm3] 2R_16394553_SNP [dm6]	G	A	3.956e^-4	0.978	INTRON Sema-2b
X	12845743	X_12845743_SNP [dm3] X_12951710_SNP [dm6]	G	A	3.960e^-4	0.978	INTRON hec
3L	2646631	3L_2646631_SNP [dm3] 3L_2646631_SNP [dm6]	T	A	3.988e^-4	0.978	UTR_3_PRIME CG1143 DOWNSTREAM CG1143	TF binding site mE1_TFBS_cad
2R	6567949	2R_6567949_SNP [dm3] 2R_10680444_SNP [dm6]	A	C	3.997e^-4	0.978	INTRON stan	TF binding site mE1_TFBS_Trl
3R	20226041	3R_20226041_SNP [dm3] 3R_24400319_SNP [dm6]	C	G	4.000e^-4	0.978	UTR_3_PRIME nAChRalpha1 DOWNSTREAM nAChRalpha1
X	19315413	X_19315413_SNP [dm3] X_19421380_SNP [dm6]	T	G	4.008e^-4	0.978	INTRON kek5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14389469	3L_14389469_SNP [dm3] 3L_14396369_SNP [dm6]	C	G	4.020e^-4	0.978	INTERGENIC
2R	11671705	2R_11671705_SNP [dm3] 2R_15784200_SNP [dm6]	G	T	4.034e^-4	0.978	INTRON Zasp52	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7945612	2R_7945612_INS [dm3] 2R_12058107_INS [dm6]	A	AA	4.039e^-4	0.978	INTRON Drep-3
3R	2083489	3R_2083489_SNP [dm3] 3R_6257767_SNP [dm6]	T	A	4.040e^-4	0.978	INTERGENIC
3L	14797648	3L_14797648_SNP [dm3] 3L_14804548_SNP [dm6]	C	T	4.048e^-4	0.978	UPSTREAM CG17839 INTERGENIC
2R	12212097	2R_12212097_SNP [dm3] 2R_16324592_SNP [dm6]	C	T	4.052e^-4	0.978	UTR_3_PRIME CG4282 DOWNSTREAM Vha44
X	4137976	X_4137976_SNP [dm3] X_4243943_SNP [dm6]	G	C	4.056e^-4	0.978	DOWNSTREAM Muc4B INTERGENIC
X	9741050	X_9741050_SNP [dm3] X_9847017_SNP [dm6]	C	T	4.057e^-4	0.978	INTRON CG32698
2R	11907181	2R_11907181_SNP [dm3] 2R_16019676_SNP [dm6]	A	G	4.077e^-4	0.978	INTRON CG8399
2R	11724086	2R_11724086_SNP [dm3] 2R_15836581_SNP [dm6]	A	G	4.081e^-4	0.978	INTRON tun	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens mE1_TFBS_Trl
2R	17593717	2R_17593717_SNP [dm3] 2R_21706212_SNP [dm6]	G	A	4.082e^-4	0.978	INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	18266323	3L_18266323_SNP [dm3] 3L_18273223_SNP [dm6]	G	T	4.083e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	412023	3L_412023_SNP [dm3] 3L_412023_SNP [dm6]	G	T	4.085e^-4	0.978	INTERGENIC
2L	14702724	2L_14702724_SNP [dm3] 2L_14702724_SNP [dm6]	C	G	4.093e^-4	0.978	INTERGENIC
2R	15906348	2R_15906348_SNP [dm3] 2R_20018843_SNP [dm6]	G	A	4.094e^-4	0.978	INTERGENIC
2R	13251119	2R_13251119_SNP [dm3] 2R_17363614_SNP [dm6]	T	C	4.100e^-4	0.978	SYNONYMOUS_CODING mbl INTRON mbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10852647	3L_10852647_SNP [dm3] 3L_10859547_SNP [dm6]	T	A	4.104e^-4	0.978	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_kn
2R	9127856	2R_9127856_SNP [dm3] 2R_13240351_SNP [dm6]	A	C	4.115e^-4	0.978	NON_SYNONYMOUS_CODING GstE14 UPSTREAM CG4679	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26963771	3R_26963771_SNP [dm3] 3R_31138049_SNP [dm6]	A	T	4.116e^-4	0.978	INTRON Gycbeta100B
3R	25080196	3R_25080196_SNP [dm3] 3R_29254474_SNP [dm6]	C	G	4.122e^-4	0.978	INTRON stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	14720755	2L_14720755_SNP [dm3] 2L_14720755_SNP [dm6]	A	C	4.126e^-4	0.978	INTERGENIC
3R	23480670	3R_23480670_SNP [dm3] 3R_27654948_SNP [dm6]	G	T	4.126e^-4	0.978	INTRON tau
X	15462886	X_15462886_SNP [dm3] X_15568853_SNP [dm6]	A	G	4.130e^-4	0.978	UPSTREAM CG7860 INTERGENIC
3L	457111	3L_457111_SNP [dm3] 3L_457111_SNP [dm6]	T	A	4.137e^-4	0.978	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	11340150	2R_11340150_SNP [dm3] 2R_15452645_SNP [dm6]	A	T	4.162e^-4	0.978	INTRON CG43729
2R	8137710	2R_8137710_SNP [dm3] 2R_12250205_SNP [dm6]	C	A	4.186e^-4	0.978	INTERGENIC
2R	9147026	2R_9147026_SNP [dm3] 2R_13259521_SNP [dm6]	T	A	4.187e^-4	0.978	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3R	21876295	3R_21876295_SNP [dm3] 3R_26050573_SNP [dm6]	T	C	4.196e^-4	0.978	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10799317	X_10799317_SNP [dm3] X_10905284_SNP [dm6]	T	C	4.202e^-4	0.978	UPSTREAM CG43901 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6873237	2R_6873237_SNP [dm3] 2R_10985732_SNP [dm6]	C	A	4.221e^-4	0.978	INTRON luna
3R	13600672	3R_13600672_SNP [dm3] 3R_17774950_SNP [dm6]	C	T	4.223e^-4	0.978	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17153040	3R_17153040_SNP [dm3] 3R_21327318_SNP [dm6]	G	A	4.225e^-4	0.978	INTRON CG16791	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5020003	X_5020003_SNP [dm3] X_5125970_SNP [dm6]	A	G	4.234e^-4	0.978	INTRON rg & 1 other
X	16855733	X_16855733_SNP [dm3] X_16961700_SNP [dm6]	G	T	4.249e^-4	0.978	INTRON CG9086	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	6559055	2R_6559055_DEL [dm3] 2R_10671550_DEL [dm6]	ACTCAATCCA	A	4.258e^-4	0.978	INTERGENIC
3L	21602306	3L_21602306_SNP [dm3] 3L_21609206_SNP [dm6]	A	C	4.261e^-4	0.978	INTRON TfAP-2
2L	2279895	2L_2279895_SNP [dm3] 2L_2279895_SNP [dm6]	G	A	4.267e^-4	0.978	UPSTREAM CR43753 INTERGENIC
X	10719310	X_10719310_DEL [dm3] X_10825277_DEL [dm6]	AA	A	4.275e^-4	0.978	DOWNSTREAM CR45624 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	27185013	3R_27185013_SNP [dm3] 3R_31359291_SNP [dm6]	T	A	4.281e^-4	0.978	NON_SYNONYMOUS_CODING CG34347	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7396787	2L_7396787_SNP [dm3] 2L_7396787_SNP [dm6]	G	A	4.283e^-4	0.978	INTRON CG5160
2L	1750985	2L_1750985_SNP [dm3] 2L_1750985_SNP [dm6]	A	C	4.302e^-4	0.978	SYNONYMOUS_CODING CG17712 DOWNSTREAM CG17646	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
X	9621573	X_9621573_SNP [dm3] X_9727540_SNP [dm6]	A	C	4.316e^-4	0.978	DOWNSTREAM CR43498 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11069413	3L_11069413_SNP [dm3] 3L_11076313_SNP [dm6]	A	G	4.319e^-4	0.978	SYNONYMOUS_CODING CG7839	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	4877208	3L_4877208_SNP [dm3] 3L_4877208_SNP [dm6]	T	C	4.321e^-4	0.978	INTRON CG17150
3L	12146627	3L_12146627_SNP [dm3] 3L_12153527_SNP [dm6]	T	C	4.325e^-4	0.978	SYNONYMOUS_CODING Nrx-IV
2R	12678508	2R_12678508_SNP [dm3] 2R_16791003_SNP [dm6]	T	C	4.328e^-4	0.978	SYNONYMOUS_CODING CG5522	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	7001023	2L_7001023_SNP [dm3] 2L_7001023_SNP [dm6]	T	A	4.335e^-4	0.978	INTRON uif
3L	457095	3L_457095_MNP [dm3] 3L_457095_MNP [dm6]	AATC	CTAT	4.335e^-4	0.978	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3055089	3L_3055089_SNP [dm3] 3L_3055089_SNP [dm6]	T	C	4.335e^-4	0.978	UTR_5_PRIME CG16753 DOWNSTREAM CG1271 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12923423	2L_12923423_SNP [dm3] 2L_12923423_SNP [dm6]	T	G	4.338e^-4	0.978	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
3L	7887451	3L_7887451_SNP [dm3] 3L_7894351_SNP [dm6]	C	G	4.346e^-4	0.978	NON_SYNONYMOUS_CODING CG32365 UPSTREAM eIF4E-5	TF binding site mE1_TFBS_cad
2R	13415564	2R_13415564_SNP [dm3] 2R_17528059_SNP [dm6]	G	A	4.354e^-4	0.978	SYNONYMOUS_CODING Patronin
X	4557427	X_4557427_SNP [dm3] X_4663394_SNP [dm6]	G	A	4.359e^-4	0.978	INTRON CG3009
2R	15733645	2R_15733645_SNP [dm3] 2R_19846140_SNP [dm6]	C	G	4.360e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	11576600	2R_11576600_SNP [dm3] 2R_15689095_SNP [dm6]	G	T	4.369e^-4	0.978	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	20347647	3R_20347647_SNP [dm3] 3R_24521925_SNP [dm6]	T	C	4.371e^-4	0.978	UTR_3_PRIME Pp1alpha-96A DOWNSTREAM Pp1alpha-96A & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14678570	2R_14678570_SNP [dm3] 2R_18791065_SNP [dm6]	C	T	4.372e^-4	0.978	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9877897	2L_9877897_SNP [dm3] 2L_9877897_SNP [dm6]	G	T	4.373e^-4	0.978	UTR_5_PRIME nAChRalpha6 INTRON nAChRalpha6
3R	13472988	3R_13472988_SNP [dm3] 3R_17647266_SNP [dm6]	A	C	4.404e^-4	0.978	UPSTREAM CG14322 & 1 other DOWNSTREAM tRNA:CR31579 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	21079264	2R_21079264_SNP [dm3] 2R_25191741_SNP [dm6]	A	T	4.404e^-4	0.978	INTRON CG9380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18739202	3R_18739202_SNP [dm3] 3R_22913480_SNP [dm6]	A	T	4.409e^-4	0.978	INTRON klg
3R	8409015	3R_8409015_SNP [dm3] 3R_12583293_SNP [dm6]	T	G	4.410e^-4	0.978	INTRON Octbeta2R
X	3380974	X_3380974_SNP [dm3] X_3486941_SNP [dm6]	G	A	4.412e^-4	0.978	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3381085	X_3381085_SNP [dm3] X_3487052_SNP [dm6]	G	C	4.412e^-4	0.978	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19024800	2R_19024800_SNP [dm3] 2R_23137277_SNP [dm6]	G	A	4.419e^-4	0.978	INTERGENIC
3R	22018071	3R_22018071_SNP [dm3] 3R_26192349_SNP [dm6]	A	T	4.420e^-4	0.978	INTERGENIC
3L	5845082	3L_5845082_SNP [dm3] 3L_5851982_SNP [dm6]	G	A	4.425e^-4	0.978	INTERGENIC
3R	25841904	3R_25841904_INS [dm3] 3R_30016182_INS [dm6]	T	TTCCTTCTGGCTTCCGGCTT...	4.428e^-4	0.978	UTR_3_PRIME Mgat2 UPSTREAM CG7920	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16344708	3L_16344708_SNP [dm3] 3L_16351608_SNP [dm6]	C	T	4.439e^-4	0.978	NON_SYNONYMOUS_CODING CG4925 UPSTREAM CG4933	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	8620231	3R_8620231_SNP [dm3] 3R_12794509_SNP [dm6]	T	A	4.448e^-4	0.978	INTERGENIC
3R	10899715	3R_10899715_SNP [dm3] 3R_15073993_SNP [dm6]	T	C	4.452e^-4	0.978	INTRON dpr9
3L	19492492	3L_19492492_SNP [dm3] 3L_19499392_SNP [dm6]	T	G	4.478e^-4	0.978	NON_SYNONYMOUS_CODING CG9451
X	8222268	X_8222268_SNP [dm3] X_8328235_SNP [dm6]	A	T	4.495e^-4	0.978	INTRON nAChRalpha3
X	14829716	X_14829716_SNP [dm3] X_14935683_SNP [dm6]	G	A	4.497e^-4	0.978	INTRON pdgy
2R	16248235	2R_16248235_SNP [dm3] 2R_20360730_SNP [dm6]	C	G	4.505e^-4	0.978	INTERGENIC
2R	12809255	2R_12809255_SNP [dm3] 2R_16921750_SNP [dm6]	C	T	4.511e^-4	0.978	INTERGENIC
2L	13399308	2L_13399308_SNP [dm3] 2L_13399308_SNP [dm6]	T	C	4.515e^-4	0.978	NON_SYNONYMOUS_CODING CG7110 UPSTREAM CG10859 EXON CR44600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2R	3692346	2R_3692346_SNP [dm3] 2R_7804841_SNP [dm6]	G	A	4.517e^-4	0.978	START_GAINED Nop17l UTR_5_PRIME Nop17l	TF binding site mE1_TFBS_cad
3L	8819263	3L_8819263_SNP [dm3] 3L_8826163_SNP [dm6]	C	A	4.536e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	15065245	3L_15065245_SNP [dm3] 3L_15072145_SNP [dm6]	G	A	4.542e^-4	0.978	START_GAINED cp309 UTR_5_PRIME cp309 INTRON cp309	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
X	21184729	X_21184729_SNP [dm3] X_21313702_SNP [dm6]	C	T	4.548e^-4	0.978	SYNONYMOUS_CODING CG1801
3R	5309167	3R_5309167_SNP [dm3] 3R_9483445_SNP [dm6]	C	T	4.559e^-4	0.978	INTRON CG16779 EXON CR45203
2L	8072011	2L_8072011_SNP [dm3] 2L_8072011_SNP [dm6]	G	T	4.568e^-4	0.978	SYNONYMOUS_CODING MED20 UPSTREAM poe & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	13964497	3L_13964497_SNP [dm3] 3L_13971397_SNP [dm6]	C	T	4.569e^-4	0.978	INTRON ssp2 & 1 other
2R	16965216	2R_16965216_SNP [dm3] 2R_21077711_SNP [dm6]	A	C	4.574e^-4	0.978	INTRON Treh
3R	21677059	3R_21677059_SNP [dm3] 3R_25851337_SNP [dm6]	C	T	4.578e^-4	0.978	UPSTREAM CG5886 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	18478605	3R_18478605_SNP [dm3] 3R_22652883_SNP [dm6]	T	A	4.579e^-4	0.978	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12255945	3R_12255945_SNP [dm3] 3R_16430223_SNP [dm6]	T	C	4.587e^-4	0.978	UPSTREAM CG31279 INTERGENIC
2L	4143122	2L_4143122_SNP [dm3] 2L_4143122_SNP [dm6]	A	G	4.587e^-4	0.978	INTERGENIC
2R	11724772	2R_11724772_SNP [dm3] 2R_15837267_SNP [dm6]	C	T	4.592e^-4	0.978	INTRON tun	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	878226	2L_878226_SNP [dm3] 2L_878226_SNP [dm6]	A	C	4.596e^-4	0.978	UTR_3_PRIME CG15824 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10410917	3R_10410917_SNP [dm3] 3R_14585195_SNP [dm6]	A	T	4.602e^-4	0.978	INTRON stumps	TF binding site BDTNP1_TFBS_prd
2R	13242903	2R_13242903_SNP [dm3] 2R_17355398_SNP [dm6]	G	A	4.604e^-4	0.978	INTRON mbl
3L	1271427	3L_1271427_SNP [dm3] 3L_1271427_SNP [dm6]	A	C	4.605e^-4	0.978	INTRON CG9134
2R	17930230	2R_17930230_SNP [dm3] 2R_22042725_SNP [dm6]	T	C	4.610e^-4	0.978	SYNONYMOUS_CODING PpD5
X	14182731	X_14182731_SNP [dm3] X_14288698_SNP [dm6]	A	T	4.624e^-4	0.978	DOWNSTREAM Muc12Ea INTRON CG9400	TF binding site mE1_TFBS_HSA
3L	12019463	3L_12019463_SNP [dm3] 3L_12026363_SNP [dm6]	G	A	4.624e^-4	0.978	INTRON rols
2R	14978830	2R_14978830_SNP [dm3] 2R_19091325_SNP [dm6]	A	C	4.632e^-4	0.978	NON_SYNONYMOUS_CODING 5-HT1A
3L	15236814	3L_15236814_SNP [dm3] 3L_15243714_SNP [dm6]	G	T	4.633e^-4	0.978	DOWNSTREAM Tollo INTERGENIC
2R	16998506	2R_16998506_SNP [dm3] 2R_21111001_SNP [dm6]	A	G	4.633e^-4	0.978	INTRON ktub
X	16801467	X_16801467_SNP [dm3] X_16907434_SNP [dm6]	T	A	4.634e^-4	0.978	INTRON CR44754
2L	14637789	2L_14637789_SNP [dm3] 2L_14637789_SNP [dm6]	G	A	4.635e^-4	0.978	INTRON osp
2R	13931615	2R_13931615_SNP [dm3] 2R_18044110_SNP [dm6]	G	A	4.636e^-4	0.978	UTR_3_PRIME CG5770 UPSTREAM CG5773
2R	9385610	2R_9385610_SNP [dm3] 2R_13498105_SNP [dm6]	T	A	4.638e^-4	0.978	INTRON drk
2L	4161378	2L_4161378_SNP [dm3] 2L_4161378_SNP [dm6]	T	C	4.647e^-4	0.978	INTERGENIC
3L	457066	3L_457066_DEL [dm3] 3L_457066_DEL [dm6]	AAACGTTCGACA...	A	4.647e^-4	0.978	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	457083	3L_457083_DEL [dm3] 3L_457083_DEL [dm6]	CCCTAGATT	C	4.647e^-4	0.978	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	461575	3L_461575_SNP [dm3] 3L_461575_SNP [dm6]	A	T	4.647e^-4	0.978	INTRON klar
3L	461577	3L_461577_SNP [dm3] 3L_461577_SNP [dm6]	T	A	4.647e^-4	0.978	INTRON klar
3L	461600	3L_461600_SNP [dm3] 3L_461600_SNP [dm6]	C	A	4.647e^-4	0.978	INTRON klar
X	3421091	X_3421091_SNP [dm3] X_3527058_SNP [dm6]	G	A	4.651e^-4	0.978	INTRON CG32791
3R	20489370	3R_20489370_SNP [dm3] 3R_24663648_SNP [dm6]	G	T	4.655e^-4	0.978	INTRON slo	regulatory region REDfly_CRMs
X	12020521	X_12020521_SNP [dm3] X_12126488_SNP [dm6]	T	C	4.659e^-4	0.978	INTRON Ten-a
3L	13870686	3L_13870686_SNP [dm3] 3L_13877586_SNP [dm6]	T	G	4.667e^-4	0.978	INTRON dysc
3L	2202400	3L_2202400_SNP [dm3] 3L_2202400_SNP [dm6]	A	T	4.693e^-4	0.978	INTERGENIC
2L	8349956	2L_8349956_SNP [dm3] 2L_8349956_SNP [dm6]	A	G	4.695e^-4	0.978	UTR_3_PRIME CG7778
X	8156894	X_8156894_INS [dm3] X_8262861_INS [dm6]	T	TTCCACGCTCCGAACCAAAT...	4.707e^-4	0.978	INTRON CG1632	TF binding site BDTNP1_TFBS_da
2L	13696626	2L_13696626_SNP [dm3] 2L_13696626_SNP [dm6]	G	A	4.708e^-4	0.978	INTRON CG31814
2R	20889987	2R_20889987_INS [dm3] 2R_25002464_INS [dm6]	C	CAGTGTTAGTCTTACTTAAC...	4.710e^-4	0.978	INTRON zip
3L	14835265	3L_14835265_SNP [dm3] 3L_14842165_SNP [dm6]	T	C	4.722e^-4	0.978	INTRON CG17839
2L	9469843	2L_9469843_INS [dm3] 2L_9469843_INS [dm6]	A	AA	4.730e^-4	0.978	UPSTREAM CR43769 INTERGENIC
X	15855138	X_15855138_SNP [dm3] X_15961105_SNP [dm6]	T	A	4.731e^-4	0.978	INTRON mmd
X	6058477	X_6058477_SNP [dm3] X_6164444_SNP [dm6]	G	A	4.737e^-4	0.978	INTRON Ca-alpha1T
3L	12146817	3L_12146817_SNP [dm3] 3L_12153717_SNP [dm6]	A	C	4.740e^-4	0.978	SYNONYMOUS_CODING Nrx-IV
X	18802875	X_18802875_SNP [dm3] X_18908842_SNP [dm6]	T	C	4.749e^-4	0.978	INTRON CG7378
3L	7257559	3L_7257559_SNP [dm3] 3L_7264459_SNP [dm6]	G	A	4.758e^-4	0.978	UPSTREAM CG14830 INTERGENIC
3L	5892565	3L_5892565_SNP [dm3] 3L_5899465_SNP [dm6]	C	T	4.767e^-4	0.978	UPSTREAM CG32409 DOWNSTREAM CG5592 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	10829004	3L_10829004_SNP [dm3] 3L_10835904_SNP [dm6]	C	T	4.770e^-4	0.978	INTERGENIC
2L	1310440	2L_1310440_SNP [dm3] 2L_1310440_SNP [dm6]	G	T	4.771e^-4	0.978	INTERGENIC
2L	18376166	2L_18376166_SNP [dm3] 2L_18376166_SNP [dm6]	C	G	4.773e^-4	0.978	INTRON Fas3
X	17487089	X_17487089_SNP [dm3] X_17593056_SNP [dm6]	G	T	4.781e^-4	0.978	INTRON CG12991
2L	7686150	2L_7686150_SNP [dm3] 2L_7686150_SNP [dm6]	G	C	4.782e^-4	0.978	NON_SYNONYMOUS_CODING Myo28B1 UPSTREAM CR44148
2R	17165485	2R_17165485_INS [dm3] 2R_21277980_INS [dm6]	G	GTCTG	4.785e^-4	0.978	INTRON Rgk3
3R	4932590	3R_4932590_SNP [dm3] 3R_9106868_SNP [dm6]	C	T	4.788e^-4	0.978	INTRON pum
3R	2552488	3R_2552488_SNP [dm3] 3R_6726766_SNP [dm6]	G	A	4.789e^-4	0.978	INTRON pb	regulatory region FlyBase REDfly_CRMs
3R	25125893	3R_25125893_INS [dm3] 3R_29300171_INS [dm6]	A	AA	4.792e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	25125906	3R_25125906_SNP [dm3] 3R_29300184_SNP [dm6]	A	C	4.792e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	11849740	2L_11849740_SNP [dm3] 2L_11849740_SNP [dm6]	A	G	4.806e^-4	0.978	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
2R	4589494	2R_4589494_SNP [dm3] 2R_8701989_SNP [dm6]	C	T	4.810e^-4	0.978	SYNONYMOUS_CODING CG12376 UPSTREAM CG12376 & 1 other
2L	2739080	2L_2739080_SNP [dm3] 2L_2739080_SNP [dm6]	A	C	4.810e^-4	0.978	UPSTREAM Hrs INTRON CG31689
3L	954948	3L_954948_SNP [dm3] 3L_954948_SNP [dm6]	G	A	4.815e^-4	0.978	INTRON Glut1
2L	11222276	2L_11222276_SNP [dm3] 2L_11222276_SNP [dm6]	T	C	4.819e^-4	0.978	INTRON ab
3R	6105675	3R_6105675_SNP [dm3] 3R_10279953_SNP [dm6]	T	A	4.829e^-4	0.978	INTRON CG43143
2L	2831223	2L_2831223_INS [dm3] 2L_2831223_INS [dm6]	T	TG	4.833e^-4	0.978	UPSTREAM Duox INTERGENIC	TF binding site mE1_TFBS_Trl
X	17229245	X_17229245_SNP [dm3] X_17335212_SNP [dm6]	C	T	4.840e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26963842	3R_26963842_SNP [dm3] 3R_31138120_SNP [dm6]	G	A	4.842e^-4	0.978	INTRON Gycbeta100B
3L	1908330	3L_1908330_SNP [dm3] 3L_1908330_SNP [dm6]	A	T	4.845e^-4	0.978	INTRON CG1887
2R	16864024	2R_16864024_SNP [dm3] 2R_20976519_SNP [dm6]	A	C	4.845e^-4	0.978	UPSTREAM CG9344 INTRON CG34115	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	20316793	2R_20316793_SNP [dm3] 2R_24429270_SNP [dm6]	C	T	4.851e^-4	0.978	UPSTREAM prom DOWNSTREAM CG15873 INTERGENIC
X	2690048	X_2690048_SNP [dm3] X_2796015_SNP [dm6]	A	C	4.851e^-4	0.978	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	22020494	2L_22020494_SNP [dm3] 2L_22020494_SNP [dm6]	A	G	4.852e^-4	0.978	DOWNSTREAM CR33987 INTRON tio	TF binding site mE1_TFBS_Trl
2R	6530475	2R_6530475_DEL [dm3] 2R_10642970_DEL [dm6]	ATAAATCAATA...	A	4.866e^-4	0.978	INTRON Git	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7151653	3L_7151653_SNP [dm3] 3L_7158553_SNP [dm6]	A	G	4.867e^-4	0.978	NON_SYNONYMOUS_CODING CG8620 DOWNSTREAM Dscam2 INTRON CG8620
X	9816859	X_9816859_DEL [dm3] X_9922826_DEL [dm6]	CC	C	4.869e^-4	0.978	INTERGENIC
3L	4839102	3L_4839102_SNP [dm3] 3L_4839102_SNP [dm6]	T	C	4.869e^-4	0.978	UTR_5_PRIME CG13707 INTRON CG13707
3L	21758435	3L_21758435_SNP [dm3] 3L_21765335_SNP [dm6]	C	A	4.881e^-4	0.978	INTRON Syn1
3L	743147	3L_743147_SNP [dm3] 3L_743147_SNP [dm6]	G	C	4.882e^-4	0.978	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	16791292	X_16791292_SNP [dm3] X_16897259_SNP [dm6]	C	G	4.890e^-4	0.978	UPSTREAM CG33252 INTERGENIC
3R	16828758	3R_16828758_INS [dm3] 3R_21003036_INS [dm6]	T	TTCCAAGT	4.891e^-4	0.978	INTRON Calx
3L	2646789	3L_2646789_SNP [dm3] 3L_2646789_SNP [dm6]	T	G	4.899e^-4	0.978	UTR_3_PRIME CG1143 DOWNSTREAM CG1143
X	9536783	X_9536783_SNP [dm3] X_9642750_SNP [dm6]	T	C	4.902e^-4	0.978	INTRON l_1_G0232	TF binding site mE1_TFBS_inv
2R	7835259	2R_7835259_SNP [dm3] 2R_11947754_SNP [dm6]	A	C	4.903e^-4	0.978	INTRON CG13188
3R	23652110	3R_23652110_SNP [dm3] 3R_27826388_SNP [dm6]	A	C	4.916e^-4	0.978	INTRON CG34353	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	23652134	3R_23652134_SNP [dm3] 3R_27826412_SNP [dm6]	G	C	4.916e^-4	0.978	INTRON CG34353	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	10382797	2R_10382797_SNP [dm3] 2R_14495292_SNP [dm6]	A	G	4.925e^-4	0.978	SYNONYMOUS_CODING L	TF binding site mE1_TFBS_cad
3L	15700947	3L_15700947_SNP [dm3] 3L_15707847_SNP [dm6]	A	G	4.928e^-4	0.978	INTERGENIC
3R	26486380	3R_26486380_SNP [dm3] 3R_30660658_SNP [dm6]	A	T	4.931e^-4	0.978	INTERGENIC
3L	12451606	3L_12451606_SNP [dm3] 3L_12458506_SNP [dm6]	G	A	4.938e^-4	0.978	INTERGENIC
2R	16340634	2R_16340634_SNP [dm3] 2R_20453129_SNP [dm6]	A	G	4.941e^-4	0.978	INTRON CG12484
2R	9385572	2R_9385572_SNP [dm3] 2R_13498067_SNP [dm6]	T	A	4.944e^-4	0.978	INTRON drk
2R	9519093	2R_9519093_INS [dm3] 2R_13631588_INS [dm6]	GC	TAAAAATAGTATAGTA...	4.945e^-4	0.978	INTRON fas
3L	15235256	3L_15235256_SNP [dm3] 3L_15242156_SNP [dm6]	C	A	4.945e^-4	0.978	UTR_3_PRIME Tollo	TF binding site mE1_TFBS_HSA
X	16791327	X_16791327_SNP [dm3] X_16897294_SNP [dm6]	A	T	4.950e^-4	0.978	UPSTREAM CG33252 INTERGENIC
3R	19808689	3R_19808689_DEL [dm3] 3R_23982967_DEL [dm6]	AA	A	4.957e^-4	0.978	UTR_3_PRIME CG31140 UPSTREAM CR31451	TF binding site BDTNP1_TFBS_dl
X	8186110	X_8186110_SNP [dm3] X_8292077_SNP [dm6]	T	C	4.963e^-4	0.978	INTRON nAChRalpha3
3R	4341488	3R_4341488_SNP [dm3] 3R_8515766_SNP [dm6]	G	A	4.967e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	5744978	X_5744978_INS [dm3] X_5850945_INS [dm6]	C	CAACCAACC	4.985e^-4	0.978	INTERGENIC
X	8697797	X_8697797_SNP [dm3] X_8803764_SNP [dm6]	A	G	4.986e^-4	0.978	INTRON Lim1
2L	7202011	2L_7202011_SNP [dm3] 2L_7202011_SNP [dm6]	G	A	4.987e^-4	0.978	INTRON CG4502
3L	2645041	3L_2645041_SNP [dm3] 3L_2645041_SNP [dm6]	G	T	4.998e^-4	0.978	UPSTREAM CG1143 INTERGENIC
3R	8416228	3R_8416228_SNP [dm3] 3R_12590506_SNP [dm6]	A	T	5.000e^-4	0.978	INTRON Octbeta2R
3R	20640256	3R_20640256_SNP [dm3] 3R_24814534_SNP [dm6]	G	A	5.006e^-4	0.978	UPSTREAM CG5807 DOWNSTREAM CG5808 INTRON CG34150	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16052807	X_16052807_SNP [dm3] X_16158774_SNP [dm6]	C	T	5.007e^-4	0.978	INTERGENIC
2R	14541196	2R_14541196_SNP [dm3] 2R_18653691_SNP [dm6]	T	C	5.015e^-4	0.978	UPSTREAM SP2637 INTRON SP2637	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	6058643	X_6058643_SNP [dm3] X_6164610_SNP [dm6]	C	A	5.015e^-4	0.978	INTRON Ca-alpha1T
3R	5137887	3R_5137887_SNP [dm3] 3R_9312165_SNP [dm6]	A	G	5.018e^-4	0.978	INTRON CG8861
2L	4143121	2L_4143121_SNP [dm3] 2L_4143121_SNP [dm6]	G	T	5.023e^-4	0.978	INTERGENIC
X	21946768	X_21946768_SNP [dm3] X_22544932_SNP [dm6]	T	C	5.025e^-4	0.978	UPSTREAM CG17599 INTERGENIC
2R	16287970	2R_16287970_SNP [dm3] 2R_20400465_SNP [dm6]	A	G	5.033e^-4	0.978	INTERGENIC
3R	26846421	3R_26846421_SNP [dm3] 3R_31020699_SNP [dm6]	T	C	5.034e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_inv
2R	15566985	2R_15566985_SNP [dm3] 2R_19679480_SNP [dm6]	T	C	5.063e^-4	0.978	INTERGENIC
3R	12322172	3R_12322172_SNP [dm3] 3R_16496450_SNP [dm6]	A	T	5.070e^-4	0.978	INTERGENIC
X	3138744	X_3138744_SNP [dm3] X_3244711_SNP [dm6]	T	A	5.072e^-4	0.978	UPSTREAM ng4 INTRON dnc
3L	7257565	3L_7257565_SNP [dm3] 3L_7264465_SNP [dm6]	C	T	5.075e^-4	0.978	UPSTREAM CG14830 INTERGENIC
3L	13990347	3L_13990347_INS [dm3] 3L_13997247_INS [dm6]	T	TAT	5.076e^-4	0.978	FRAME_SHIFT CG17361 DOWNSTREAM 26-29-p & 1 other
2L	9504688	2L_9504688_SNP [dm3] 2L_9504688_SNP [dm6]	G	A	5.078e^-4	0.978	SYNONYMOUS_CODING CG33298
3L	6475597	3L_6475597_INS [dm3] 3L_6482497_INS [dm6]	G	GTA	5.078e^-4	0.978	INTRON CG42747	TF binding site mE1_TFBS_inv
3R	8481232	3R_8481232_DEL [dm3] 3R_12655510_DEL [dm6]	ACA	A	5.081e^-4	0.978	INTRON CG6225
X	6900107	X_6900107_SNP [dm3] X_7006074_SNP [dm6]	C	G	5.090e^-4	0.978	INTRON Inx7
3L	10793964	3L_10793964_SNP [dm3] 3L_10800864_SNP [dm6]	A	G	5.094e^-4	0.978	UPSTREAM CG12523 INTERGENIC	TF binding site mE1_TFBS_cad
2R	14646889	2R_14646889_SNP [dm3] 2R_18759384_SNP [dm6]	C	T	5.095e^-4	0.978	SPLICE_SITE_REGION Jabba INTRON Jabba
3R	26963749	3R_26963749_SNP [dm3] 3R_31138027_SNP [dm6]	T	C	5.096e^-4	0.978	INTRON Gycbeta100B
2L	6743782	2L_6743782_INS [dm3] 2L_6743782_INS [dm6]	A	ACTA	5.102e^-4	0.978	DOWNSTREAM CG31910 INTRON CG11221
2R	10926354	2R_10926354_SNP [dm3] 2R_15038849_SNP [dm6]	T	A	5.110e^-4	0.978	INTRON hbs
2L	2863927	2L_2863927_SNP [dm3] 2L_2863927_SNP [dm6]	C	T	5.125e^-4	0.978	INTRON CG2991	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9139352	2R_9139352_SNP [dm3] 2R_13251847_SNP [dm6]	A	T	5.126e^-4	0.978	UPSTREAM CG4712 DOWNSTREAM CG4714 INTERGENIC	TF binding site mE1_TFBS_cad
2R	6924104	2R_6924104_SNP [dm3] 2R_11036599_SNP [dm6]	A	C	5.132e^-4	0.978	INTRON luna
X	16801486	X_16801486_DEL [dm3] X_16907453_DEL [dm6]	ATTGTATGTATTGC...	A	5.137e^-4	0.978	INTRON CR44754
X	16801503	X_16801503_DEL [dm3] X_16907470_DEL [dm6]	ATTTTC	A	5.137e^-4	0.978	INTRON CR44754
2L	5381031	2L_5381031_SNP [dm3] 2L_5381031_SNP [dm6]	C	T	5.139e^-4	0.978	EXON CR42850	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1908266	3L_1908266_SNP [dm3] 3L_1908266_SNP [dm6]	G	A	5.143e^-4	0.978	INTRON CG1887
3R	25400454	3R_25400454_SNP [dm3] 3R_29574732_SNP [dm6]	G	C	5.147e^-4	0.978	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	20821277	3L_20821277_SNP [dm3] 3L_20828177_SNP [dm6]	C	T	5.149e^-4	0.978	UTR_5_PRIME Pka-R1 UPSTREAM Pka-R1 INTRON Pka-R1
2R	8862237	2R_8862237_SNP [dm3] 2R_12974732_SNP [dm6]	C	T	5.150e^-4	0.978	INTRON Psc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16514391	2R_16514391_SNP [dm3] 2R_20626886_SNP [dm6]	G	A	5.173e^-4	0.978	NON_SYNONYMOUS_CODING CG16742
3L	7611943	3L_7611943_SNP [dm3] 3L_7618843_SNP [dm6]	G	A	5.179e^-4	0.978	INTRON CG33275
2R	6560094	2R_6560094_SNP [dm3] 2R_10672589_SNP [dm6]	G	A	5.180e^-4	0.978	UPSTREAM stan INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10693458	3L_10693458_SNP [dm3] 3L_10700358_SNP [dm6]	A	C	5.185e^-4	0.978	INTERGENIC
3L	14835301	3L_14835301_SNP [dm3] 3L_14842201_SNP [dm6]	T	A	5.185e^-4	0.978	INTRON CG17839
3L	12437452	3L_12437452_SNP [dm3] 3L_12444352_SNP [dm6]	C	T	5.202e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7686140	2L_7686140_SNP [dm3] 2L_7686140_SNP [dm6]	G	A	5.206e^-4	0.978	SYNONYMOUS_CODING Myo28B1 UPSTREAM CR44148
2L	7686143	2L_7686143_SNP [dm3] 2L_7686143_SNP [dm6]	C	T	5.206e^-4	0.978	SYNONYMOUS_CODING Myo28B1 UPSTREAM CR44148
X	2666831	X_2666831_SNP [dm3] X_2772798_SNP [dm6]	C	T	5.208e^-4	0.978	INTRON kirre
3L	7276935	3L_7276935_SNP [dm3] 3L_7283835_SNP [dm6]	A	T	5.218e^-4	0.978	INTRON unc-13-4A
X	3912551	X_3912551_DEL [dm3] X_4018518_DEL [dm6]	AGCTGACCTGTCCGGGA...	A	5.225e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_Med
3R	21991468	3R_21991468_SNP [dm3] 3R_26165746_SNP [dm6]	A	G	5.228e^-4	0.978	INTERGENIC
3L	391184	3L_391184_SNP [dm3] 3L_391184_SNP [dm6]	C	A	5.232e^-4	0.978	DOWNSTREAM CR45378 INTRON trh
3L	8391780	3L_8391780_SNP [dm3] 3L_8398680_SNP [dm6]	A	C	5.233e^-4	0.978	INTRON CG7120
2R	4501903	2R_4501903_SNP [dm3] 2R_8614398_SNP [dm6]	G	A	5.245e^-4	0.978	UPSTREAM Cirl & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_inv
2L	16572356	2L_16572356_SNP [dm3] 2L_16572356_SNP [dm6]	T	G	5.249e^-4	0.978	INTRON CG42389
2R	10946936	2R_10946936_SNP [dm3] 2R_15059431_SNP [dm6]	G	C	5.253e^-4	0.978	INTERGENIC
2R	11643918	2R_11643918_SNP [dm3] 2R_15756413_SNP [dm6]	G	A	5.256e^-4	0.978	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11420890	3L_11420890_INS [dm3] 3L_11427790_INS [dm6]	G	GC	5.260e^-4	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_z
X	16791348	X_16791348_SNP [dm3] X_16897315_SNP [dm6]	T	C	5.264e^-4	0.978	UPSTREAM CG33252 INTERGENIC
3L	11847833	3L_11847833_SNP [dm3] 3L_11854733_SNP [dm6]	G	T	5.264e^-4	0.978	SYNONYMOUS_CODING CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4138430	3R_4138430_SNP [dm3] 3R_8312708_SNP [dm6]	A	T	5.270e^-4	0.978	SYNONYMOUS_CODING CG11698 UPSTREAM CG11694 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo
2L	19675367	2L_19675367_SNP [dm3] 2L_19675367_SNP [dm6]	A	C	5.271e^-4	0.978	INTRON Lar
3R	26628563	3R_26628563_SNP [dm3] 3R_30802841_SNP [dm6]	G	C	5.275e^-4	0.978	INTRON wts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2R	11724954	2R_11724954_SNP [dm3] 2R_15837449_SNP [dm6]	A	G	5.275e^-4	0.978	INTRON tun	regulatory region REDfly_CRMs
3R	3269072	3R_3269072_DEL [dm3] 3R_7443350_DEL [dm6]	TATCAT	T	5.286e^-4	0.978	INTERGENIC
3R	6218645	3R_6218645_SNP [dm3] 3R_10392923_SNP [dm6]	A	G	5.286e^-4	0.978	INTRON cwo
3L	8885320	3L_8885320_SNP [dm3] 3L_8892220_SNP [dm6]	T	G	5.317e^-4	0.978	SPLICE_SITE_REGION Mcm7 INTRON Mcm7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8895939	2L_8895939_SNP [dm3] 2L_8895939_SNP [dm6]	C	T	5.318e^-4	0.978	INTERGENIC
3R	17347131	3R_17347131_SNP [dm3] 3R_21521409_SNP [dm6]	C	G	5.325e^-4	0.978	INTRON CG7956	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	23339779	3R_23339779_SNP [dm3] 3R_27514057_SNP [dm6]	A	G	5.326e^-4	0.978	INTERGENIC
2L	21055222	2L_21055222_SNP [dm3] 2L_21055222_SNP [dm6]	A	T	5.327e^-4	0.978	NON_SYNONYMOUS_CODING Itgbetanu	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9367094	3L_9367094_SNP [dm3] 3L_9373994_SNP [dm6]	G	A	5.332e^-4	0.978	UTR_5_PRIME Hsp22 UTR_3_PRIME Hsp67Bb UPSTREAM Hsp22 DOWNSTREAM Hsp67Bb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	3240803	2R_3240803_SNP [dm3] 2R_7353298_SNP [dm6]	C	T	5.363e^-4	0.978	SYNONYMOUS_CODING Dscam1 INTRON Dscam1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	6797789	2R_6797789_SNP [dm3] 2R_10910284_SNP [dm6]	C	A	5.367e^-4	0.978	NON_SYNONYMOUS_CODING Obp47a
3R	26618205	3R_26618205_SNP [dm3] 3R_30792483_SNP [dm6]	C	T	5.369e^-4	0.978	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
X	12929518	X_12929518_INS [dm3] X_13035485_INS [dm6]	T	TT	5.370e^-4	0.978	INTRON rad
2R	13853486	2R_13853486_SNP [dm3] 2R_17965981_SNP [dm6]	G	A	5.381e^-4	0.978	INTERGENIC
3L	1982891	3L_1982891_INS [dm3] 3L_1982891_INS [dm6]	G	GGGGCTG	5.384e^-4	0.978	INTERGENIC
2R	13932152	2R_13932152_SNP [dm3] 2R_18044647_SNP [dm6]	T	G	5.386e^-4	0.978	SYNONYMOUS_CODING CG5770 UPSTREAM CG5773
3R	25765280	3R_25765280_SNP [dm3] 3R_29939558_SNP [dm6]	T	A	5.387e^-4	0.978	NON_SYNONYMOUS_CODING CG15523
X	13173591	X_13173591_SNP [dm3] X_13279558_SNP [dm6]	C	T	5.394e^-4	0.978	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl
2L	2922113	2L_2922113_SNP [dm3] 2L_2922113_SNP [dm6]	A	T	5.405e^-4	0.978	INTRON lilli
3R	22141451	3R_22141451_SNP [dm3] 3R_26315729_SNP [dm6]	C	T	5.406e^-4	0.978	INTERGENIC
X	11848058	X_11848058_SNP [dm3] X_11954025_SNP [dm6]	A	G	5.408e^-4	0.978	INTRON cac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11622016	3L_11622016_SNP [dm3] 3L_11628916_SNP [dm6]	A	T	5.409e^-4	0.978	UPSTREAM mir-3642 INTRON CG18815	TF binding site mE1_TFBS_chinmo
3L	15693061	3L_15693061_SNP [dm3] 3L_15699961_SNP [dm6]	C	T	5.412e^-4	0.978	UPSTREAM comm2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	3962796	3R_3962796_SNP [dm3] 3R_8137074_SNP [dm6]	C	T	5.424e^-4	0.978	INTERGENIC
X	8292944	X_8292944_SNP [dm3] X_8398911_SNP [dm6]	G	C	5.440e^-4	0.978	UPSTREAM CG10555 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14788646	2L_14788646_SNP [dm3] 2L_14788646_SNP [dm6]	T	C	5.446e^-4	0.978	INTERGENIC
2R	9131365	2R_9131365_SNP [dm3] 2R_13243860_SNP [dm6]	T	G	5.474e^-4	0.978	DOWNSTREAM CR45278 INTERGENIC
3L	1692031	3L_1692031_SNP [dm3] 3L_1692031_SNP [dm6]	T	G	5.496e^-4	0.978	INTRON CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9556615	2L_9556615_SNP [dm3] 2L_9556615_SNP [dm6]	C	T	5.499e^-4	0.978	INTRON jp
3L	10858663	3L_10858663_SNP [dm3] 3L_10865563_SNP [dm6]	T	A	5.502e^-4	0.978	INTRON tna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17882939	2R_17882939_SNP [dm3] 2R_21995434_SNP [dm6]	T	C	5.514e^-4	0.978	INTRON CG34370	TF binding site mE1_TFBS_inv
3R	4108029	3R_4108029_SNP [dm3] 3R_8282307_SNP [dm6]	G	T	5.515e^-4	0.978	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	12020229	X_12020229_SNP [dm3] X_12126196_SNP [dm6]	T	G	5.517e^-4	0.978	INTRON Ten-a
3L	21602857	3L_21602857_SNP [dm3] 3L_21609757_SNP [dm6]	T	C	5.523e^-4	0.978	SYNONYMOUS_CODING TfAP-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	11680204	2R_11680204_SNP [dm3] 2R_15792699_SNP [dm6]	T	C	5.525e^-4	0.978	INTRON Zasp52
3R	11590659	3R_11590659_SNP [dm3] 3R_15764937_SNP [dm6]	C	T	5.527e^-4	0.978	INTERGENIC
X	4091100	X_4091100_SNP [dm3] X_4197067_SNP [dm6]	G	C	5.532e^-4	0.978	INTRON Fas2
X	16052803	X_16052803_SNP [dm3] X_16158770_SNP [dm6]	G	A	5.534e^-4	0.978	INTERGENIC
2R	16870520	2R_16870520_SNP [dm3] 2R_20983015_SNP [dm6]	C	A	5.559e^-4	0.978	SYNONYMOUS_CODING CG9313 DOWNSTREAM CG15651	TF binding site mE1_TFBS_cad
2L	9426788	2L_9426788_SNP [dm3] 2L_9426788_SNP [dm6]	C	T	5.560e^-4	0.978	UTR_5_PRIME Fbp2 UPSTREAM Fbp2 DOWNSTREAM Mco1
2L	403438	2L_403438_SNP [dm3] 2L_403438_SNP [dm6]	G	C	5.564e^-4	0.978	UPSTREAM RpI135 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12816038	3L_12816038_SNP [dm3] 3L_12822938_SNP [dm6]	C	A	5.564e^-4	0.978	INTRON CG42588
X	14841983	X_14841983_SNP [dm3] X_14947950_SNP [dm6]	A	G	5.591e^-4	0.978	INTRON pdgy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9501665	2L_9501665_SNP [dm3] 2L_9501665_SNP [dm6]	C	T	5.592e^-4	0.978	INTRON CG33298
2L	5381034	2L_5381034_SNP [dm3] 2L_5381034_SNP [dm6]	G	C	5.594e^-4	0.978	EXON CR42850	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15213703	3L_15213703_SNP [dm3] 3L_15220603_SNP [dm6]	C	T	5.594e^-4	0.978	INTERGENIC
3L	15700949	3L_15700949_SNP [dm3] 3L_15707849_SNP [dm6]	C	G	5.613e^-4	0.978	INTERGENIC
3L	9177943	3L_9177943_SNP [dm3] 3L_9184843_SNP [dm6]	A	C	5.615e^-4	0.978	INTERGENIC
2L	9598895	2L_9598895_SNP [dm3] 2L_9598895_SNP [dm6]	G	T	5.622e^-4	0.978	UTR_3_PRIME CG4382	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3213132	X_3213132_SNP [dm3] X_3319099_SNP [dm6]	T	C	5.628e^-4	0.978	INTRON dnc & 1 other
3R	8416191	3R_8416191_SNP [dm3] 3R_12590469_SNP [dm6]	A	C	5.630e^-4	0.978	INTRON Octbeta2R
2R	8933808	2R_8933808_SNP [dm3] 2R_13046303_SNP [dm6]	C	G	5.631e^-4	0.978	UTR_3_PRIME CG13323 DOWNSTREAM CG13323
3L	6475629	3L_6475629_SNP [dm3] 3L_6482529_SNP [dm6]	T	C	5.636e^-4	0.978	INTRON CG42747	TF binding site mE1_TFBS_inv
3L	14816333	3L_14816333_SNP [dm3] 3L_14823233_SNP [dm6]	G	A	5.638e^-4	0.978	INTRON CG17839
X	17487084	X_17487084_SNP [dm3] X_17593051_SNP [dm6]	A	G	5.641e^-4	0.978	INTRON CG12991
X	12430723	X_12430723_SNP [dm3] X_12536690_SNP [dm6]	C	T	5.643e^-4	0.978	INTRON CG43921
2R	13283310	2R_13283310_SNP [dm3] 2R_17395805_SNP [dm6]	G	T	5.652e^-4	0.978	INTRON Sip1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	16890386	3R_16890386_SNP [dm3] 3R_21064664_SNP [dm6]	A	G	5.661e^-4	0.978	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3R	27867697	3R_27867697_INS [dm3] 3R_32041975_INS [dm6]	CCA	AGTGGTGAGTGGC...	5.664e^-4	0.978	INTERGENIC
2L	510296	2L_510296_SNP [dm3] 2L_510296_SNP [dm6]	C	G	5.667e^-4	0.978	INTRON ush	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	21444149	3R_21444149_SNP [dm3] 3R_25618427_SNP [dm6]	G	T	5.672e^-4	0.978	UTR_5_PRIME CG5071 INTRON Npl4
2L	20128377	2L_20128377_SNP [dm3] 2L_20128377_SNP [dm6]	C	T	5.676e^-4	0.978	INTERGENIC
2R	10847155	2R_10847155_SNP [dm3] 2R_14959650_SNP [dm6]	G	T	5.685e^-4	0.978	INTRON aPKC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14385307	3L_14385307_SNP [dm3] 3L_14392207_SNP [dm6]	A	G	5.688e^-4	0.978	INTERGENIC
2R	11170047	2R_11170047_SNP [dm3] 2R_15282542_SNP [dm6]	T	C	5.689e^-4	0.978	INTRON Trpm
X	7897466	X_7897466_SNP [dm3] X_8003433_SNP [dm6]	T	C	5.689e^-4	0.978	INTRON Tbh

By genomic position
Variant impact
Gene name

Wing_L5_Vein_Length phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results