DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.423e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.0749

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2207 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	712399	3L_712399_SNP [dm3] 3L_712399_SNP [dm6]	A	T	3.206e^-7	0.234	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712385	3L_712385_DEL [dm3] 3L_712385_DEL [dm6]	TA	T	4.194e^-7	0.234	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712376	3L_712376_SNP [dm3] 3L_712376_SNP [dm6]	G	A	5.354e^-7	0.234	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712348	3L_712348_SNP [dm3] 3L_712348_SNP [dm6]	G	T	5.851e^-7	0.234	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712423	3L_712423_SNP [dm3] 3L_712423_SNP [dm6]	G	C	6.382e^-7	0.234	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712384	3L_712384_SNP [dm3] 3L_712384_SNP [dm6]	T	C	7.486e^-7	0.234	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712388	3L_712388_DEL [dm3] 3L_712388_DEL [dm6]	AAT	A	8.982e^-7	0.241	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712337	3L_712337_SNP [dm3] 3L_712337_SNP [dm6]	G	T	1.372e^-6	0.254	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712319	3L_712319_INS [dm3] 3L_712319_INS [dm6]	C	CA	1.676e^-6	0.254	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712342	3L_712342_SNP [dm3] 3L_712342_SNP [dm6]	A	T	1.676e^-6	0.254	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	14813948	3L_14813948_SNP [dm3] 3L_14820848_SNP [dm6]	G	A	1.681e^-6	0.254	INTRON CG17839
3L	712235	3L_712235_SNP [dm3] 3L_712235_SNP [dm6]	C	T	1.774e^-6	0.254	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	712455	3L_712455_SNP [dm3] 3L_712455_SNP [dm6]	C	T	1.821e^-6	0.254	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	15483312	3L_15483312_SNP [dm3] 3L_15490212_SNP [dm6]	A	G	2.035e^-6	0.254	INTERGENIC
3L	712322	3L_712322_SNP [dm3] 3L_712322_SNP [dm6]	A	G	2.220e^-6	0.254	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712335	3L_712335_SNP [dm3] 3L_712335_SNP [dm6]	T	A	2.441e^-6	0.254	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	5121979	3R_5121979_SNP [dm3] 3R_9296257_SNP [dm6]	T	G	2.445e^-6	0.254	INTRON CG8861
3L	712377	3L_712377_SNP [dm3] 3L_712377_SNP [dm6]	A	C	2.585e^-6	0.254	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	19127148	2R_19127148_SNP [dm3] 2R_23239625_SNP [dm6]	T	G	2.696e^-6	0.254	INTERGENIC
3L	711790	3L_711790_SNP [dm3] 3L_711790_SNP [dm6]	A	T	2.715e^-6	0.254	UTR_5_PRIME CG13896	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	712226	3L_712226_SNP [dm3] 3L_712226_SNP [dm6]	C	A	3.336e^-6	0.285	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	712323	3L_712323_SNP [dm3] 3L_712323_SNP [dm6]	T	A	3.345e^-6	0.285	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712374	3L_712374_SNP [dm3] 3L_712374_SNP [dm6]	G	C	3.697e^-6	0.301	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712501	3L_712501_SNP [dm3] 3L_712501_SNP [dm6]	C	G	4.611e^-6	0.34	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	16202334	3L_16202334_SNP [dm3] 3L_16209234_SNP [dm6]	A	T	4.826e^-6	0.34	INTERGENIC	TF binding site mE1_TFBS_cad
3L	15483333	3L_15483333_SNP [dm3] 3L_15490233_SNP [dm6]	T	C	4.853e^-6	0.34	INTERGENIC
3L	711857	3L_711857_SNP [dm3] 3L_711857_SNP [dm6]	A	C	5.057e^-6	0.34	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	8207850	3L_8207850_SNP [dm3] 3L_8214750_SNP [dm6]	T	C	5.085e^-6	0.34	UPSTREAM CG8012 INTERGENIC
3L	16202321	3L_16202321_SNP [dm3] 3L_16209221_SNP [dm6]	G	T	5.862e^-6	0.37	INTERGENIC	TF binding site mE1_TFBS_cad
3L	15483419	3L_15483419_SNP [dm3] 3L_15490319_SNP [dm6]	T	A	6.551e^-6	0.37	INTERGENIC
3R	13570329	3R_13570329_SNP [dm3] 3R_17744607_SNP [dm6]	A	C	6.869e^-6	0.37	INTRON TyrRII	TF binding site mE1_TFBS_cad
3L	13272867	3L_13272867_SNP [dm3] 3L_13279767_SNP [dm6]	A	G	6.873e^-6	0.37	UPSTREAM tRNA:CR32123:Psi DOWNSTREAM caps INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	712343	3L_712343_SNP [dm3] 3L_712343_SNP [dm6]	A	C	6.886e^-6	0.37	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	13557427	3L_13557427_INS [dm3] 3L_13564327_INS [dm6]	G	TA	7.053e^-6	0.37	INTRON bru-3
3L	13557430	3L_13557430_DEL [dm3] 3L_13564330_DEL [dm6]	GTTT	G	7.053e^-6	0.37	INTRON bru-3
2R	4956241	2R_4956241_SNP [dm3] 2R_9068736_SNP [dm6]	T	G	7.107e^-6	0.37	UPSTREAM ana INTRON ana
3L	16896011	3L_16896011_SNP [dm3] 3L_16902911_SNP [dm6]	A	T	7.720e^-6	0.391	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo
3L	16202346	3L_16202346_SNP [dm3] 3L_16209246_SNP [dm6]	C	T	8.259e^-6	0.405	INTERGENIC	TF binding site mE1_TFBS_cad
2R	13506075	2R_13506075_SNP [dm3] 2R_17618570_SNP [dm6]	T	G	8.423e^-6	0.405	UPSTREAM CG44403 INTRON CG10936
3L	14555445	3L_14555445_SNP [dm3] 3L_14562345_SNP [dm6]	A	T	9.081e^-6	0.426	INTRON CG34039	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
X	4093930	X_4093930_SNP [dm3] X_4199897_SNP [dm6]	T	C	9.342e^-6	0.427	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	13415564	2R_13415564_SNP [dm3] 2R_17528059_SNP [dm6]	G	A	9.592e^-6	0.428	SYNONYMOUS_CODING Patronin
3L	17624822	3L_17624822_SNP [dm3] 3L_17631722_SNP [dm6]	G	C	1.014e^-5	0.442	DOWNSTREAM CG7510 EXON CR44566
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	1.067e^-5	0.455	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17503877	X_17503877_SNP [dm3] X_17609844_SNP [dm6]	G	T	1.137e^-5	0.474	INTERGENIC
X	4094020	X_4094020_SNP [dm3] X_4199987_SNP [dm6]	T	C	1.298e^-5	0.497	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	4956302	2R_4956302_SNP [dm3] 2R_9068797_SNP [dm6]	C	T	1.352e^-5	0.497	UPSTREAM ana INTRON ana
X	7619313	X_7619313_SNP [dm3] X_7725280_SNP [dm6]	C	A	1.368e^-5	0.497	SYNONYMOUS_CODING Hira DOWNSTREAM NELF-B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7613485	X_7613485_SNP [dm3] X_7719452_SNP [dm6]	G	A	1.370e^-5	0.497	INTERGENIC
3L	1103424	3L_1103424_DEL [dm3] 3L_1103424_DEL [dm6]	CC	C	1.376e^-5	0.497	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	13415561	2R_13415561_SNP [dm3] 2R_17528056_SNP [dm6]	A	G	1.395e^-5	0.497	SYNONYMOUS_CODING Patronin
3L	2645600	3L_2645600_SNP [dm3] 3L_2645600_SNP [dm6]	A	T	1.396e^-5	0.497	INTRON CG1143	TF binding site mE1_TFBS_cad
3L	13553816	3L_13553816_DEL [dm3] 3L_13560716_DEL [dm6]	GTCGACGTAGCGACACT...	G	1.404e^-5	0.497	INTRON bru-3
3L	14489497	3L_14489497_SNP [dm3] 3L_14496397_SNP [dm6]	T	A	1.569e^-5	0.53	INTRON bbg	TF binding site mE1_TFBS_cad
X	20262267	X_20262267_SNP [dm3] X_20391240_SNP [dm6]	A	G	1.604e^-5	0.53	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14489486	3L_14489486_SNP [dm3] 3L_14496386_SNP [dm6]	A	C	1.635e^-5	0.53	INTRON bbg	TF binding site mE1_TFBS_cad
3L	14489495	3L_14489495_SNP [dm3] 3L_14496395_SNP [dm6]	G	A	1.635e^-5	0.53	INTRON bbg	TF binding site mE1_TFBS_cad
2R	15697740	2R_15697740_SNP [dm3] 2R_19810235_SNP [dm6]	T	G	1.654e^-5	0.53	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	3599792	2R_3599792_SNP [dm3] 2R_7712287_SNP [dm6]	A	G	1.670e^-5	0.53	UPSTREAM CG1942 DOWNSTREAM mir-4909 & 1 other INTERGENIC
3L	20187373	3L_20187373_SNP [dm3] 3L_20194273_SNP [dm6]	G	T	1.723e^-5	0.53	INTRON CG42674
3R	13600672	3R_13600672_SNP [dm3] 3R_17774950_SNP [dm6]	C	T	1.725e^-5	0.53	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14489539	3L_14489539_INS [dm3] 3L_14496439_INS [dm6]	A	ATTTTCTA	1.878e^-5	0.568	INTRON bbg
X	7619308	X_7619308_SNP [dm3] X_7725275_SNP [dm6]	A	G	1.944e^-5	0.579	NON_SYNONYMOUS_CODING Hira DOWNSTREAM NELF-B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2645866	3L_2645866_SNP [dm3] 3L_2645866_SNP [dm6]	A	G	2.034e^-5	0.593	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	2.056e^-5	0.593	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22141451	3R_22141451_SNP [dm3] 3R_26315729_SNP [dm6]	C	T	2.119e^-5	0.6	INTERGENIC
2R	8137681	2R_8137681_SNP [dm3] 2R_12250176_SNP [dm6]	A	C	2.144e^-5	0.6	INTERGENIC
3L	16202369	3L_16202369_SNP [dm3] 3L_16209269_SNP [dm6]	G	A	2.255e^-5	0.622	INTERGENIC	TF binding site mE1_TFBS_cad
2R	3079481	2R_3079481_SNP [dm3] 2R_7191976_SNP [dm6]	T	G	2.346e^-5	0.629	INTRON pk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17455708	3R_17455708_SNP [dm3] 3R_21629986_SNP [dm6]	G	T	2.352e^-5	0.629	INTRON E2f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	7064106	X_7064106_SNP [dm3] X_7170073_SNP [dm6]	A	T	2.411e^-5	0.629	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
X	10443026	X_10443026_SNP [dm3] X_10548993_SNP [dm6]	C	T	2.416e^-5	0.629	INTRON spri
3R	4934321	3R_4934321_SNP [dm3] 3R_9108599_SNP [dm6]	G	A	2.479e^-5	0.629	INTRON pum
3L	15488893	3L_15488893_DEL [dm3] 3L_15495793_DEL [dm6]	TCT	T	2.502e^-5	0.629	UPSTREAM CG12355 & 1 other INTERGENIC
2R	12112716	2R_12112716_SNP [dm3] 2R_16225211_SNP [dm6]	A	G	2.516e^-5	0.629	UTR_5_PRIME CG15706
2R	8479078	2R_8479078_SNP [dm3] 2R_12591573_SNP [dm6]	G	T	2.686e^-5	0.662	DOWNSTREAM CR30055 INTRON Sin3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2L	3437649	2L_3437649_SNP [dm3] 2L_3437649_SNP [dm6]	A	T	2.754e^-5	0.662	INTERGENIC
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	2.754e^-5	0.662	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	20187404	3L_20187404_SNP [dm3] 3L_20194304_SNP [dm6]	A	G	2.800e^-5	0.665	INTRON CG42674
3R	4342921	3R_4342921_SNP [dm3] 3R_8517199_SNP [dm6]	C	T	2.870e^-5	0.672	UPSTREAM CG11737 INTERGENIC
2L	2669602	2L_2669602_SNP [dm3] 2L_2669602_SNP [dm6]	G	T	2.904e^-5	0.672	UPSTREAM Gr23a INTERGENIC
2L	21921535	2L_21921535_SNP [dm3] 2L_21921535_SNP [dm6]	T	C	2.956e^-5	0.676	INTERGENIC
2R	8479010	2R_8479010_SNP [dm3] 2R_12591505_SNP [dm6]	T	C	3.081e^-5	0.696	DOWNSTREAM CR30055 INTRON Sin3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
X	7622623	X_7622623_SNP [dm3] X_7728590_SNP [dm6]	G	A	3.157e^-5	0.703	UPSTREAM CG12155 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8447278	2L_8447278_SNP [dm3] 2L_8447278_SNP [dm6]	T	G	3.207e^-5	0.703	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	15090507	2L_15090507_SNP [dm3] 2L_15090507_SNP [dm6]	T	C	3.223e^-5	0.703	INTRON CG15270
3L	15483234	3L_15483234_SNP [dm3] 3L_15490134_SNP [dm6]	A	C	3.339e^-5	0.72	INTERGENIC
2R	8479079	2R_8479079_SNP [dm3] 2R_12591574_SNP [dm6]	G	T	3.387e^-5	0.72	DOWNSTREAM CR30055 INTRON Sin3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
3L	14929590	3L_14929590_SNP [dm3] 3L_14936490_SNP [dm6]	G	C	3.416e^-5	0.72	INTRON DCX-EMAP
X	7622443	X_7622443_SNP [dm3] X_7728410_SNP [dm6]	G	A	3.503e^-5	0.727	UPSTREAM CG12155 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	15903063	2R_15903063_SNP [dm3] 2R_20015558_SNP [dm6]	A	C	3.529e^-5	0.727	DOWNSTREAM CR44629 & 1 other INTERGENIC
3R	13600157	3R_13600157_SNP [dm3] 3R_17774435_SNP [dm6]	T	G	3.643e^-5	0.742	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3L	16216199	3L_16216199_SNP [dm3] 3L_16223099_SNP [dm6]	C	T	3.745e^-5	0.748	DOWNSTREAM tRNA:CR32153 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3L	8518986	3L_8518986_SNP [dm3] 3L_8525886_SNP [dm6]	A	C	3.813e^-5	0.748	INTRON foi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	14842540	X_14842540_SNP [dm3] X_14948507_SNP [dm6]	T	C	3.833e^-5	0.748	INTRON pdgy	TF binding site mE1_TFBS_HSA
2L	9506599	2L_9506599_SNP [dm3] 2L_9506599_SNP [dm6]	T	A	3.850e^-5	0.748	INTRON CG33298
3L	15483232	3L_15483232_SNP [dm3] 3L_15490132_SNP [dm6]	A	T	3.893e^-5	0.748	INTERGENIC
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	3.910e^-5	0.748	INTRON dnc
2R	11724908	2R_11724908_SNP [dm3] 2R_15837403_SNP [dm6]	C	T	3.989e^-5	0.751	INTRON tun	regulatory region REDfly_CRMs
2R	16289319	2R_16289319_SNP [dm3] 2R_20401814_SNP [dm6]	C	T	4.009e^-5	0.751	INTERGENIC
3R	6253276	3R_6253276_SNP [dm3] 3R_10427554_SNP [dm6]	G	A	4.195e^-5	0.76	INTERGENIC
2L	606452	2L_606452_SNP [dm3] 2L_606452_SNP [dm6]	C	T	4.218e^-5	0.76	DOWNSTREAM CR43648 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22778961	3R_22778961_SNP [dm3] 3R_26953239_SNP [dm6]	G	A	4.225e^-5	0.76	UTR_5_PRIME CG6330 INTRON CG6330	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	4953988	2R_4953988_SNP [dm3] 2R_9066483_SNP [dm6]	T	C	4.428e^-5	0.76	INTRON ana	regulatory region REDfly_CRMs
3L	9685669	3L_9685669_SNP [dm3] 3L_9692569_SNP [dm6]	A	G	4.477e^-5	0.76	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	9443434	2L_9443434_SNP [dm3] 2L_9443434_SNP [dm6]	C	T	4.486e^-5	0.76	INTRON numb
3L	5234139	3L_5234139_INS [dm3] 3L_5241039_INS [dm6]	C	CC	4.512e^-5	0.76	INTRON shep
3R	27128046	3R_27128046_SNP [dm3] 3R_31302324_SNP [dm6]	C	T	4.564e^-5	0.76	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_inv
X	20262270	X_20262270_INS [dm3] X_20391243_INS [dm6]	A	ATCAATAATAATTCAA...	4.646e^-5	0.76	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14389469	3L_14389469_SNP [dm3] 3L_14396369_SNP [dm6]	C	G	4.677e^-5	0.76	INTERGENIC
3L	2981701	3L_2981701_SNP [dm3] 3L_2981701_SNP [dm6]	A	G	4.741e^-5	0.76	SYNONYMOUS_CODING CG2107	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11340150	2R_11340150_SNP [dm3] 2R_15452645_SNP [dm6]	A	T	4.751e^-5	0.76	INTRON CG43729
X	15264242	X_15264242_SNP [dm3] X_15370209_SNP [dm6]	T	C	4.809e^-5	0.76	INTRON acj6
3L	14925605	3L_14925605_SNP [dm3] 3L_14932505_SNP [dm6]	T	G	4.928e^-5	0.76	INTRON DCX-EMAP
3R	13600041	3R_13600041_SNP [dm3] 3R_17774319_SNP [dm6]	C	T	4.989e^-5	0.76	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3L	3966395	3L_3966395_SNP [dm3] 3L_3966395_SNP [dm6]	C	T	5.027e^-5	0.76	INTERGENIC
3L	13554079	3L_13554079_SNP [dm3] 3L_13560979_SNP [dm6]	G	A	5.055e^-5	0.76	INTRON bru-3
3L	4737896	3L_4737896_SNP [dm3] 3L_4737896_SNP [dm6]	G	A	5.058e^-5	0.76	INTRON RhoGEF64C
3R	21876370	3R_21876370_SNP [dm3] 3R_26050648_SNP [dm6]	T	G	5.088e^-5	0.76	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	5121977	3R_5121977_SNP [dm3] 3R_9296255_SNP [dm6]	A	T	5.106e^-5	0.76	INTRON CG8861
3L	1109916	3L_1109916_SNP [dm3] 3L_1109916_SNP [dm6]	C	T	5.116e^-5	0.76	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	4289756	3L_4289756_SNP [dm3] 3L_4289756_SNP [dm6]	C	A	5.150e^-5	0.76	SYNONYMOUS_CODING Hexo1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24353994	3R_24353994_SNP [dm3] 3R_28528272_SNP [dm6]	G	A	5.283e^-5	0.76	NON_SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3077646	2R_3077646_SNP [dm3] 2R_7190141_SNP [dm6]	T	G	5.394e^-5	0.76	INTRON pk
2R	16864005	2R_16864005_SNP [dm3] 2R_20976500_SNP [dm6]	A	T	5.403e^-5	0.76	UPSTREAM CG9344 INTRON CG34115	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	19024849	2R_19024849_SNP [dm3] 2R_23137326_SNP [dm6]	T	G	5.410e^-5	0.76	INTERGENIC
X	19421607	X_19421607_DEL [dm3] X_19527574_DEL [dm6]	CAC	C	5.436e^-5	0.76	UPSTREAM CoRest INTRON CoRest	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	7620280	X_7620280_SNP [dm3] X_7726247_SNP [dm6]	G	T	5.499e^-5	0.76	UTR_3_PRIME NELF-B DOWNSTREAM Hira	TF binding site mE1_TFBS_chinmo
2R	16289150	2R_16289150_SNP [dm3] 2R_20401645_SNP [dm6]	G	A	5.502e^-5	0.76	INTERGENIC
X	6643082	X_6643082_INS [dm3] X_6749049_INS [dm6]	A	AACAGAGA	5.531e^-5	0.76	INTRON CG14439
X	7619193	X_7619193_SNP [dm3] X_7725160_SNP [dm6]	C	T	5.586e^-5	0.76	SYNONYMOUS_CODING Hira DOWNSTREAM NELF-B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22784279	3R_22784279_SNP [dm3] 3R_26958557_SNP [dm6]	C	T	5.635e^-5	0.76	UPSTREAM CG6330 INTERGENIC
3L	743426	3L_743426_SNP [dm3] 3L_743426_SNP [dm6]	C	T	5.680e^-5	0.76	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	4421150	2L_4421150_SNP [dm3] 2L_4421150_SNP [dm6]	G	T	5.693e^-5	0.76	INTRON CG15431
3L	15483252	3L_15483252_SNP [dm3] 3L_15490152_SNP [dm6]	G	T	5.715e^-5	0.76	INTERGENIC
3L	4817350	3L_4817350_SNP [dm3] 3L_4817350_SNP [dm6]	G	A	5.758e^-5	0.76	SYNONYMOUS_CODING Dhc64C
3L	7296139	3L_7296139_DEL [dm3] 3L_7303039_DEL [dm6]	AA	A	5.846e^-5	0.76	INTRON unc-13-4A
X	4093952	X_4093952_SNP [dm3] X_4199919_SNP [dm6]	A	T	5.873e^-5	0.76	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	14489501	3L_14489501_DEL [dm3] 3L_14496401_DEL [dm6]	TA	T	5.926e^-5	0.76	INTRON bbg	TF binding site mE1_TFBS_cad
2L	22020494	2L_22020494_SNP [dm3] 2L_22020494_SNP [dm6]	A	G	6.000e^-5	0.76	DOWNSTREAM CR33987 INTRON tio	TF binding site mE1_TFBS_Trl
3R	2867864	3R_2867864_SNP [dm3] 3R_7042142_SNP [dm6]	A	C	6.030e^-5	0.76	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8137678	2R_8137678_SNP [dm3] 2R_12250173_SNP [dm6]	T	C	6.057e^-5	0.76	INTERGENIC
3L	1108132	3L_1108132_SNP [dm3] 3L_1108132_SNP [dm6]	G	T	6.072e^-5	0.76	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	10436858	3R_10436858_SNP [dm3] 3R_14611136_SNP [dm6]	T	C	6.073e^-5	0.76	INTRON CG14853
3R	10435085	3R_10435085_SNP [dm3] 3R_14609363_SNP [dm6]	G	T	6.199e^-5	0.76	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	8137710	2R_8137710_SNP [dm3] 2R_12250205_SNP [dm6]	C	A	6.200e^-5	0.76	INTERGENIC
3L	3680402	3L_3680402_SNP [dm3] 3L_3680402_SNP [dm6]	T	C	6.230e^-5	0.76	INTERGENIC
2L	2660003	2L_2660003_SNP [dm3] 2L_2660003_SNP [dm6]	T	A	6.238e^-5	0.76	INTERGENIC
3L	14489459	3L_14489459_SNP [dm3] 3L_14496359_SNP [dm6]	G	C	6.311e^-5	0.76	INTRON bbg	TF binding site mE1_TFBS_cad
3R	3469607	3R_3469607_SNP [dm3] 3R_7643885_SNP [dm6]	C	T	6.406e^-5	0.76	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16344746	X_16344746_SNP [dm3] X_16450713_SNP [dm6]	A	T	6.421e^-5	0.76	INTRON Rbp2
X	7622393	X_7622393_SNP [dm3] X_7728360_SNP [dm6]	C	G	6.463e^-5	0.76	UTR_5_PRIME NELF-B UPSTREAM CG12155	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	2645611	3L_2645611_SNP [dm3] 3L_2645611_SNP [dm6]	C	A	6.495e^-5	0.76	INTRON CG1143	TF binding site mE1_TFBS_cad
3L	9685627	3L_9685627_SNP [dm3] 3L_9692527_SNP [dm6]	A	G	6.530e^-5	0.76	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	9685634	3L_9685634_SNP [dm3] 3L_9692534_SNP [dm6]	C	T	6.530e^-5	0.76	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	9686029	3L_9686029_SNP [dm3] 3L_9692929_SNP [dm6]	A	T	6.530e^-5	0.76	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
3L	9686121	3L_9686121_SNP [dm3] 3L_9693021_SNP [dm6]	T	A	6.530e^-5	0.76	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
X	7617819	X_7617819_SNP [dm3] X_7723786_SNP [dm6]	C	A	6.550e^-5	0.76	SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_HSA
2L	16239804	2L_16239804_SNP [dm3] 2L_16239804_SNP [dm6]	C	T	6.576e^-5	0.76	INTRON CG42817
3L	10969436	3L_10969436_SNP [dm3] 3L_10976336_SNP [dm6]	A	T	6.596e^-5	0.76	INTERGENIC	TF binding site mE1_TFBS_cad
3R	22780339	3R_22780339_SNP [dm3] 3R_26954617_SNP [dm6]	T	C	6.614e^-5	0.76	INTRON CG6330	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	16154167	X_16154167_SNP [dm3] X_16260134_SNP [dm6]	T	A	6.658e^-5	0.76	INTERGENIC
2R	8137696	2R_8137696_SNP [dm3] 2R_12250191_SNP [dm6]	A	T	6.681e^-5	0.76	INTERGENIC
2R	6795339	2R_6795339_SNP [dm3] 2R_10907834_SNP [dm6]	G	T	6.729e^-5	0.76	INTERGENIC
3L	4737895	3L_4737895_SNP [dm3] 3L_4737895_SNP [dm6]	A	G	6.760e^-5	0.76	INTRON RhoGEF64C
2R	3078696	2R_3078696_SNP [dm3] 2R_7191191_SNP [dm6]	C	T	6.782e^-5	0.76	INTRON pk	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
2L	9506598	2L_9506598_SNP [dm3] 2L_9506598_SNP [dm6]	C	A	6.837e^-5	0.76	INTRON CG33298
3L	17456726	3L_17456726_SNP [dm3] 3L_17463626_SNP [dm6]	A	G	6.876e^-5	0.76	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	11409403	X_11409403_SNP [dm3] X_11515370_SNP [dm6]	A	T	6.888e^-5	0.76	INTRON Drak	TF binding site mE1_TFBS_Kr
3L	9508876	3L_9508876_SNP [dm3] 3L_9515776_SNP [dm6]	G	T	7.054e^-5	0.76	INTRON CG33700
3L	712622	3L_712622_SNP [dm3] 3L_712622_SNP [dm6]	G	A	7.081e^-5	0.76	UPSTREAM CG13896 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	9686313	3L_9686313_SNP [dm3] 3L_9693213_SNP [dm6]	C	A	7.093e^-5	0.76	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
2L	8447265	2L_8447265_SNP [dm3] 2L_8447265_SNP [dm6]	A	G	7.135e^-5	0.76	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	3077080	2R_3077080_INS [dm3] 2R_7189575_INS [dm6]	G	GGCAG	7.158e^-5	0.76	INTRON pk
X	9721384	X_9721384_DEL [dm3] X_9827351_DEL [dm6]	AA	A	7.173e^-5	0.76	INTRON CG32698
2R	10837352	2R_10837352_SNP [dm3] 2R_14949847_SNP [dm6]	A	G	7.241e^-5	0.76	UPSTREAM aPKC INTRON aPKC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	2310890	X_2310890_SNP [dm3] X_2416857_SNP [dm6]	C	G	7.257e^-5	0.76	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	3178769	2R_3178769_SNP [dm3] 2R_7291264_SNP [dm6]	G	A	7.368e^-5	0.76	INTRON pwn	TF binding site mE1_TFBS_cad
2L	3291545	2L_3291545_SNP [dm3] 2L_3291545_SNP [dm6]	G	T	7.398e^-5	0.76	SYNONYMOUS_CODING CG9664 UTR_3_PRIME CG9664	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	16957224	2L_16957224_SNP [dm3] 2L_16957224_SNP [dm6]	A	G	7.428e^-5	0.76	INTERGENIC
3L	2645081	3L_2645081_SNP [dm3] 3L_2645081_SNP [dm6]	A	G	7.451e^-5	0.76	UPSTREAM CG1143 INTERGENIC
X	17948777	X_17948777_SNP [dm3] X_18054744_SNP [dm6]	G	A	7.469e^-5	0.76	INTRON Sh
2R	16862751	2R_16862751_SNP [dm3] 2R_20975246_SNP [dm6]	T	C	7.495e^-5	0.76	UPSTREAM CG34115 INTERGENIC
3L	15483205	3L_15483205_SNP [dm3] 3L_15490105_SNP [dm6]	G	A	7.528e^-5	0.76	INTERGENIC
3L	11270074	3L_11270074_SNP [dm3] 3L_11276974_SNP [dm6]	A	G	7.540e^-5	0.76	INTERGENIC
2L	7206708	2L_7206708_SNP [dm3] 2L_7206708_SNP [dm6]	G	A	7.541e^-5	0.76	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784	TF binding site mE1_TFBS_sens
X	17952250	X_17952250_SNP [dm3] X_18058217_SNP [dm6]	G	A	7.733e^-5	0.766	INTRON Sh
X	9536658	X_9536658_SNP [dm3] X_9642625_SNP [dm6]	T	A	7.748e^-5	0.766	INTRON l_1_G0232	TF binding site mE1_TFBS_inv
2L	4624701	2L_4624701_SNP [dm3] 2L_4624701_SNP [dm6]	C	T	7.776e^-5	0.766	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	712066	3L_712066_SNP [dm3] 3L_712066_SNP [dm6]	G	A	7.832e^-5	0.766	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	21802210	2L_21802210_SNP [dm3] 2L_21802210_SNP [dm6]	G	A	7.844e^-5	0.766	INTERGENIC
3L	2683655	3L_2683655_SNP [dm3] 3L_2683655_SNP [dm6]	A	G	7.877e^-5	0.766	INTRON Fife
3L	312104	3L_312104_SNP [dm3] 3L_312104_SNP [dm6]	C	T	7.900e^-5	0.766	UPSTREAM fwd INTRON fwd	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	12116819	2R_12116819_SNP [dm3] 2R_16229314_SNP [dm6]	A	G	8.002e^-5	0.766	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6463898	2L_6463898_SNP [dm3] 2L_6463898_SNP [dm6]	A	T	8.003e^-5	0.766	UTR_5_PRIME CG16947	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	8133682	2R_8133682_SNP [dm3] 2R_12246177_SNP [dm6]	T	A	8.125e^-5	0.766	DOWNSTREAM CR44315 INTERGENIC
X	4093939	X_4093939_SNP [dm3] X_4199906_SNP [dm6]	A	C	8.171e^-5	0.766	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	22618992	3R_22618992_SNP [dm3] 3R_26793270_SNP [dm6]	A	G	8.184e^-5	0.766	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	22297776	2L_22297776_SNP [dm3] 2L_22297776_SNP [dm6]	G	A	8.214e^-5	0.766	INTERGENIC	transposable element FlyBase
3L	391184	3L_391184_SNP [dm3] 3L_391184_SNP [dm6]	C	A	8.256e^-5	0.766	DOWNSTREAM CR45378 INTRON trh
3L	12055410	3L_12055410_SNP [dm3] 3L_12062310_SNP [dm6]	C	T	8.266e^-5	0.766	INTRON rols	TF binding site BDTNP1_TFBS_da
3R	22141543	3R_22141543_SNP [dm3] 3R_26315821_SNP [dm6]	T	A	8.337e^-5	0.766	INTERGENIC
2R	17028512	2R_17028512_SNP [dm3] 2R_21141007_SNP [dm6]	A	C	8.406e^-5	0.766	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	14376180	3L_14376180_SNP [dm3] 3L_14383080_SNP [dm6]	C	T	8.433e^-5	0.766	UTR_3_PRIME CG43120
3R	6299585	3R_6299585_SNP [dm3] 3R_10473863_SNP [dm6]	G	T	8.522e^-5	0.766	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	7156753	3L_7156753_SNP [dm3] 3L_7163653_SNP [dm6]	G	A	8.534e^-5	0.766	INTRON Dscam2
3L	7156769	3L_7156769_SNP [dm3] 3L_7163669_SNP [dm6]	G	A	8.534e^-5	0.766	INTRON Dscam2
2L	8450856	2L_8450856_SNP [dm3] 2L_8450856_SNP [dm6]	A	C	8.542e^-5	0.766	SYNONYMOUS_CODING fu12
3L	18202542	3L_18202542_SNP [dm3] 3L_18209442_SNP [dm6]	A	T	8.544e^-5	0.766	INTERGENIC
3L	16216184	3L_16216184_SNP [dm3] 3L_16223084_SNP [dm6]	C	A	8.710e^-5	0.766	DOWNSTREAM tRNA:CR32153 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2L	9463855	2L_9463855_SNP [dm3] 2L_9463855_SNP [dm6]	C	T	8.721e^-5	0.766	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_kn
2R	4950454	2R_4950454_SNP [dm3] 2R_9062949_SNP [dm6]	G	A	8.733e^-5	0.766	INTRON ana	regulatory region REDfly_CRMs
3R	12971257	3R_12971257_SNP [dm3] 3R_17145535_SNP [dm6]	A	C	8.762e^-5	0.766	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3R	12971260	3R_12971260_DEL [dm3] 3R_17145538_DEL [dm6]	AGGTAAGCATCCTA...	G	8.762e^-5	0.766	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
X	6993925	X_6993925_SNP [dm3] X_7099892_SNP [dm6]	C	A	8.892e^-5	0.766	SYNONYMOUS_CODING CG4615	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	837693	3L_837693_SNP [dm3] 3L_837693_SNP [dm6]	A	C	8.917e^-5	0.766	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
X	17952248	X_17952248_SNP [dm3] X_18058215_SNP [dm6]	C	A	8.920e^-5	0.766	INTRON Sh
3L	11525805	3L_11525805_SNP [dm3] 3L_11532705_SNP [dm6]	G	A	9.035e^-5	0.766	INTRON Mob2
3L	9510193	3L_9510193_SNP [dm3] 3L_9517093_SNP [dm6]	C	A	9.092e^-5	0.766	INTRON CG33700
3L	11168307	3L_11168307_SNP [dm3] 3L_11175207_SNP [dm6]	T	A	9.106e^-5	0.766	INTRON CG14142
X	6258888	X_6258888_SNP [dm3] X_6364855_SNP [dm6]	A	C	9.107e^-5	0.766	SYNONYMOUS_CODING swa	TF binding site mE1_TFBS_chinmo
X	7612558	X_7612558_SNP [dm3] X_7718525_SNP [dm6]	A	G	9.117e^-5	0.766	UPSTREAM CG15478 INTERGENIC
3L	7777439	3L_7777439_SNP [dm3] 3L_7784339_SNP [dm6]	C	T	9.158e^-5	0.766	INTRON CG32369
3L	5886015	3L_5886015_SNP [dm3] 3L_5892915_SNP [dm6]	C	G	9.195e^-5	0.766	INTERGENIC
3L	1103387	3L_1103387_SNP [dm3] 3L_1103387_SNP [dm6]	C	T	9.195e^-5	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	9463941	2L_9463941_SNP [dm3] 2L_9463941_SNP [dm6]	T	C	9.254e^-5	0.766	UTR_3_PRIME numb DOWNSTREAM numb
2R	10998493	2R_10998493_SNP [dm3] 2R_15110988_SNP [dm6]	A	G	9.275e^-5	0.766	INTERGENIC
2R	18010243	2R_18010243_SNP [dm3] 2R_22122738_SNP [dm6]	G	A	9.360e^-5	0.768	UPSTREAM mei-S332 & 1 other INTRON mei-S332	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10998491	2R_10998491_SNP [dm3] 2R_15110986_SNP [dm6]	A	G	9.380e^-5	0.768	INTERGENIC
2R	6962276	2R_6962276_SNP [dm3] 2R_11074771_SNP [dm6]	A	G	9.441e^-5	0.77	INTRON luna
3L	1103352	3L_1103352_INS [dm3] 3L_1103352_INS [dm6]	T	TGTAT	9.495e^-5	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	2690048	X_2690048_SNP [dm3] X_2796015_SNP [dm6]	A	C	9.614e^-5	0.777	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	15488966	3L_15488966_SNP [dm3] 3L_15495866_SNP [dm6]	G	T	9.667e^-5	0.778	UPSTREAM CG12355 & 1 other INTERGENIC
2L	8740651	2L_8740651_SNP [dm3] 2L_8740651_SNP [dm6]	T	A	9.770e^-5	0.783	UTR_5_PRIME raw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3L	5888622	3L_5888622_SNP [dm3] 3L_5895522_SNP [dm6]	G	T	9.944e^-5	0.793	DOWNSTREAM Pole2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3699414	3L_3699414_SNP [dm3] 3L_3699414_SNP [dm6]	C	T	1.003e^-4	0.795	INTERGENIC
2L	8602199	2L_8602199_SNP [dm3] 2L_8602199_SNP [dm6]	A	C	1.009e^-4	0.795	INTRON Sema-1a
X	5661124	X_5661124_SNP [dm3] X_5767091_SNP [dm6]	G	A	1.010e^-4	0.795	SYNONYMOUS_CODING CG3097 INTRON CG42699	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8592217	3L_8592217_SNP [dm3] 3L_8599117_SNP [dm6]	G	C	1.027e^-4	0.806	UTR_3_PRIME CG43078 DOWNSTREAM Nelf-E
3R	25036733	3R_25036733_SNP [dm3] 3R_29211011_SNP [dm6]	C	G	1.040e^-4	0.81	INTERGENIC
X	3035763	X_3035763_DEL [dm3] X_3141730_DEL [dm6]	GG	G	1.054e^-4	0.81	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	26667135	3R_26667135_SNP [dm3] 3R_30841413_SNP [dm6]	A	C	1.062e^-4	0.81	UTR_3_PRIME CG15544	TF binding site mE1_TFBS_cad
3L	9491503	3L_9491503_SNP [dm3] 3L_9498403_SNP [dm6]	T	C	1.066e^-4	0.81	INTRON path
3R	6253307	3R_6253307_SNP [dm3] 3R_10427585_SNP [dm6]	G	T	1.069e^-4	0.81	INTERGENIC
3L	11532947	3L_11532947_SNP [dm3] 3L_11539847_SNP [dm6]	A	G	1.071e^-4	0.81	INTRON Mob2
X	7622376	X_7622376_INS [dm3] X_7728343_INS [dm6]	T	TT	1.073e^-4	0.81	UTR_5_PRIME NELF-B UPSTREAM CG12155	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	3078631	2R_3078631_DEL [dm3] 2R_7191126_DEL [dm6]	TACT	T	1.076e^-4	0.81	INTRON pk	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
2L	606460	2L_606460_SNP [dm3] 2L_606460_SNP [dm6]	T	C	1.077e^-4	0.81	DOWNSTREAM CR43648 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7835523	3L_7835523_SNP [dm3] 3L_7842423_SNP [dm6]	C	G	1.081e^-4	0.81	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	9515096	3L_9515096_SNP [dm3] 3L_9521996_SNP [dm6]	A	G	1.086e^-4	0.81	INTRON CG33700
3R	5709131	3R_5709131_SNP [dm3] 3R_9883409_SNP [dm6]	C	G	1.087e^-4	0.81	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8448106	2L_8448106_SNP [dm3] 2L_8448106_SNP [dm6]	G	A	1.094e^-4	0.81	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9319410	3L_9319410_SNP [dm3] 3L_9326310_SNP [dm6]	T	A	1.097e^-4	0.81	INTERGENIC
X	2311636	X_2311636_SNP [dm3] X_2417603_SNP [dm6]	A	T	1.104e^-4	0.81	INTERGENIC	TF binding site mE1_TFBS_sens
3L	7836670	3L_7836670_SNP [dm3] 3L_7843570_SNP [dm6]	T	C	1.106e^-4	0.81	INTRON Pdp1	regulatory region REDfly_CRMs
3L	19496781	3L_19496781_SNP [dm3] 3L_19503681_SNP [dm6]	G	A	1.108e^-4	0.81	START_GAINED CG9452 UTR_5_PRIME CG9452
2L	7109463	2L_7109463_SNP [dm3] 2L_7109463_SNP [dm6]	C	T	1.117e^-4	0.81	INTRON Pvf3
3R	4313161	3R_4313161_SNP [dm3] 3R_8487439_SNP [dm6]	G	A	1.123e^-4	0.81	INTERGENIC
2R	13739800	2R_13739800_SNP [dm3] 2R_17852295_SNP [dm6]	G	T	1.136e^-4	0.81	UPSTREAM CG30323 INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5702213	X_5702213_SNP [dm3] X_5808180_SNP [dm6]	T	G	1.142e^-4	0.81	UPSTREAM Prosbeta2R1 INTERGENIC
X	4208104	X_4208104_SNP [dm3] X_4314071_SNP [dm6]	A	G	1.142e^-4	0.81	DOWNSTREAM mei-9 INTRON CR44957
2R	10998501	2R_10998501_SNP [dm3] 2R_15110996_SNP [dm6]	T	G	1.144e^-4	0.81	INTERGENIC
3L	11791042	3L_11791042_SNP [dm3] 3L_11797942_SNP [dm6]	A	G	1.150e^-4	0.81	SYNONYMOUS_CODING Klp68D	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18010238	2R_18010238_SNP [dm3] 2R_22122733_SNP [dm6]	C	T	1.158e^-4	0.81	UPSTREAM mei-S332 & 1 other INTRON mei-S332	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1101004	3L_1101004_SNP [dm3] 3L_1101004_SNP [dm6]	C	T	1.159e^-4	0.81	UTR_5_PRIME bab1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3R	10410917	3R_10410917_SNP [dm3] 3R_14585195_SNP [dm6]	A	T	1.161e^-4	0.81	INTRON stumps	TF binding site BDTNP1_TFBS_prd
X	18463732	X_18463732_SNP [dm3] X_18569699_SNP [dm6]	A	G	1.167e^-4	0.81	INTRON Bx	TF binding site BDTNP1_TFBS_da
3L	9735039	3L_9735039_SNP [dm3] 3L_9741939_SNP [dm6]	A	T	1.168e^-4	0.81	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18930447	2L_18930447_SNP [dm3] 2L_18930447_SNP [dm6]	G	A	1.180e^-4	0.81	INTRON ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1100043	3L_1100043_SNP [dm3] 3L_1100043_SNP [dm6]	C	G	1.181e^-4	0.81	SYNONYMOUS_CODING bab1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8447795	2L_8447795_SNP [dm3] 2L_8447795_SNP [dm6]	C	T	1.184e^-4	0.81	SYNONYMOUS_CODING U26 UTR_3_PRIME U26
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	1.187e^-4	0.81	EXON CR44950
3L	14489439	3L_14489439_SNP [dm3] 3L_14496339_SNP [dm6]	A	G	1.193e^-4	0.81	INTRON bbg	TF binding site mE1_TFBS_cad
X	17952247	X_17952247_SNP [dm3] X_18058214_SNP [dm6]	A	C	1.195e^-4	0.81	INTRON Sh
2R	6795340	2R_6795340_SNP [dm3] 2R_10907835_SNP [dm6]	A	G	1.198e^-4	0.81	INTERGENIC
2R	4176364	2R_4176364_SNP [dm3] 2R_8288859_SNP [dm6]	T	C	1.205e^-4	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	16202254	3L_16202254_SNP [dm3] 3L_16209154_SNP [dm6]	C	T	1.207e^-4	0.81	INTERGENIC	TF binding site mE1_TFBS_cad
3R	21405169	3R_21405169_SNP [dm3] 3R_25579447_SNP [dm6]	C	T	1.209e^-4	0.81	INTRON msi
3L	8532578	3L_8532578_SNP [dm3] 3L_8539478_SNP [dm6]	A	C	1.213e^-4	0.81	INTERGENIC
3L	14919557	3L_14919557_SNP [dm3] 3L_14926457_SNP [dm6]	T	G	1.225e^-4	0.81	UTR_5_PRIME DCX-EMAP INTRON DCX-EMAP	TF binding site mE1_TFBS_cad
X	7615074	X_7615074_DEL [dm3] X_7721041_DEL [dm6]	TT	T	1.229e^-4	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3997257	2L_3997257_INS [dm3] 2L_3997257_INS [dm6]	T	TGA	1.229e^-4	0.81	INTERGENIC
2R	8137699	2R_8137699_SNP [dm3] 2R_12250194_SNP [dm6]	T	C	1.240e^-4	0.81	INTERGENIC
X	14842374	X_14842374_INS [dm3] X_14948341_INS [dm6]	A	ACATAGTCCATAAGGTA...	1.264e^-4	0.81	INTRON pdgy	TF binding site mE1_TFBS_HSA
3L	9661317	3L_9661317_SNP [dm3] 3L_9668217_SNP [dm6]	A	G	1.265e^-4	0.81	INTRON fry	TF binding site mE1_TFBS_cad
3L	9512513	3L_9512513_SNP [dm3] 3L_9519413_SNP [dm6]	C	G	1.285e^-4	0.81	INTRON CG33700
3L	14815465	3L_14815465_SNP [dm3] 3L_14822365_SNP [dm6]	G	A	1.292e^-4	0.81	INTRON CG17839
X	17061765	X_17061765_SNP [dm3] X_17167732_SNP [dm6]	C	G	1.309e^-4	0.81	INTRON baz
X	17061777	X_17061777_SNP [dm3] X_17167744_SNP [dm6]	G	T	1.309e^-4	0.81	INTRON baz
X	17061793	X_17061793_SNP [dm3] X_17167760_SNP [dm6]	A	T	1.309e^-4	0.81	INTRON baz
X	17061814	X_17061814_DEL [dm3] X_17167781_DEL [dm6]	CAAGCTAAC	C	1.309e^-4	0.81	INTRON baz
3L	7129119	3L_7129119_SNP [dm3] 3L_7136019_SNP [dm6]	T	G	1.320e^-4	0.81	INTRON melt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4934322	3R_4934322_SNP [dm3] 3R_9108600_SNP [dm6]	C	T	1.322e^-4	0.81	INTRON pum
X	11320928	X_11320928_MNP [dm3] X_11426895_MNP [dm6]	GCGG	TTTT	1.322e^-4	0.81	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11320932	X_11320932_INS [dm3] X_11426899_INS [dm6]	A	AAT	1.322e^-4	0.81	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20262315	X_20262315_DEL [dm3] X_20391288_DEL [dm6]	TGATGTTTCTTAT...	T	1.323e^-4	0.81	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16619019	2L_16619019_SNP [dm3] 2L_16619019_SNP [dm6]	T	A	1.342e^-4	0.81	INTRON CG42389	TF binding site BDTNP1_TFBS_dl
3R	5129759	3R_5129759_SNP [dm3] 3R_9304037_SNP [dm6]	C	A	1.344e^-4	0.81	INTRON CG8861
2R	7107070	2R_7107070_SNP [dm3] 2R_11219565_SNP [dm6]	T	C	1.347e^-4	0.81	UTR_5_PRIME Syx6 UPSTREAM Syx6 & 1 other INTRON CG9084	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	17926699	2R_17926699_SNP [dm3] 2R_22039194_SNP [dm6]	G	A	1.353e^-4	0.81	INTRON CG34370
2L	9654361	2L_9654361_SNP [dm3] 2L_9654361_SNP [dm6]	C	T	1.361e^-4	0.81	SYNONYMOUS_CODING Apoltp
2R	19337409	2R_19337409_SNP [dm3] 2R_23449886_SNP [dm6]	G	A	1.372e^-4	0.81	INTRON CG43795
2L	17333598	2L_17333598_SNP [dm3] 2L_17333598_SNP [dm6]	G	A	1.380e^-4	0.81	INTERGENIC
2R	3079950	2R_3079950_SNP [dm3] 2R_7192445_SNP [dm6]	T	G	1.383e^-4	0.81	INTRON pk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	15308481	3L_15308481_SNP [dm3] 3L_15315381_SNP [dm6]	G	A	1.396e^-4	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	21795611	2L_21795611_SNP [dm3] 2L_21795611_SNP [dm6]	C	G	1.397e^-4	0.81	UPSTREAM CG31612 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
3L	19449444	3L_19449444_SNP [dm3] 3L_19456344_SNP [dm6]	C	G	1.398e^-4	0.81	DOWNSTREAM CR45434 INTERGENIC
2L	9487588	2L_9487588_SNP [dm3] 2L_9487588_SNP [dm6]	A	G	1.404e^-4	0.81	INTERGENIC
X	6788786	X_6788786_SNP [dm3] X_6894753_SNP [dm6]	A	C	1.414e^-4	0.81	INTERGENIC
2L	19715501	2L_19715501_SNP [dm3] 2L_19715501_SNP [dm6]	C	T	1.420e^-4	0.81	INTRON Lar	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2L	10085825	2L_10085825_SNP [dm3] 2L_10085825_SNP [dm6]	C	T	1.421e^-4	0.81	INTRON CG44153
3L	15483280	3L_15483280_SNP [dm3] 3L_15490180_SNP [dm6]	T	C	1.435e^-4	0.81	INTERGENIC
3R	20231859	3R_20231859_SNP [dm3] 3R_24406137_SNP [dm6]	A	C	1.443e^-4	0.81	INTRON nAChRalpha1
3L	15308611	3L_15308611_SNP [dm3] 3L_15315511_SNP [dm6]	T	C	1.446e^-4	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	10998512	2R_10998512_SNP [dm3] 2R_15111007_SNP [dm6]	G	T	1.447e^-4	0.81	INTERGENIC
2L	19822550	2L_19822550_SNP [dm3] 2L_19822550_SNP [dm6]	A	C	1.450e^-4	0.81	INTRON sick
X	11320954	X_11320954_SNP [dm3] X_11426921_SNP [dm6]	A	T	1.462e^-4	0.81	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13682475	3R_13682475_SNP [dm3] 3R_17856753_SNP [dm6]	G	A	1.462e^-4	0.81	INTRON tinc
3L	3103931	3L_3103931_SNP [dm3] 3L_3103931_SNP [dm6]	T	C	1.463e^-4	0.81	INTRON Cht7
3L	1108128	3L_1108128_SNP [dm3] 3L_1108128_SNP [dm6]	G	T	1.464e^-4	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	7471573	3L_7471573_SNP [dm3] 3L_7478473_SNP [dm6]	A	G	1.472e^-4	0.81	INTERGENIC
2R	11573868	2R_11573868_SNP [dm3] 2R_15686363_SNP [dm6]	C	T	1.477e^-4	0.81	SYNONYMOUS_CODING Ranbp11 UPSTREAM CG30082	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2R	12267152	2R_12267152_SNP [dm3] 2R_16379647_SNP [dm6]	T	A	1.479e^-4	0.81	UPSTREAM CG43187 EXON CR45316 & 1 other
3R	10436798	3R_10436798_SNP [dm3] 3R_14611076_SNP [dm6]	T	C	1.484e^-4	0.81	INTRON CG14853
3R	6218645	3R_6218645_SNP [dm3] 3R_10392923_SNP [dm6]	A	G	1.485e^-4	0.81	INTRON cwo
3L	10969435	3L_10969435_SNP [dm3] 3L_10976335_SNP [dm6]	A	C	1.489e^-4	0.81	INTERGENIC	TF binding site mE1_TFBS_cad
3R	11666483	3R_11666483_SNP [dm3] 3R_15840761_SNP [dm6]	G	C	1.500e^-4	0.81	SYNONYMOUS_CODING spn-E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9510164	3L_9510164_SNP [dm3] 3L_9517064_SNP [dm6]	G	A	1.501e^-4	0.81	INTRON CG33700
3L	9510679	3L_9510679_SNP [dm3] 3L_9517579_SNP [dm6]	G	C	1.501e^-4	0.81	INTRON CG33700
X	13998264	X_13998264_SNP [dm3] X_14104231_SNP [dm6]	C	G	1.508e^-4	0.81	UPSTREAM tRNA:S4:12Ee & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3143873	3L_3143873_SNP [dm3] 3L_3143873_SNP [dm6]	T	A	1.533e^-4	0.81	UTR_5_PRIME CG1291 UPSTREAM CG11537	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	6994158	X_6994158_SNP [dm3] X_7100125_SNP [dm6]	A	G	1.536e^-4	0.81	SYNONYMOUS_CODING CG4615	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8391972	3L_8391972_SNP [dm3] 3L_8398872_SNP [dm6]	A	T	1.537e^-4	0.81	INTRON CG7120
3L	9685540	3L_9685540_SNP [dm3] 3L_9692440_SNP [dm6]	A	G	1.537e^-4	0.81	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	6508912	2L_6508912_SNP [dm3] 2L_6508912_SNP [dm6]	T	A	1.541e^-4	0.81	UPSTREAM CR44775 INTRON CG31637	TF binding site BDTNP1_TFBS_hb
3L	742989	3L_742989_SNP [dm3] 3L_742989_SNP [dm6]	C	A	1.541e^-4	0.81	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	16325368	2R_16325368_SNP [dm3] 2R_20437863_SNP [dm6]	C	A	1.542e^-4	0.81	INTRON CG12484
X	7613628	X_7613628_SNP [dm3] X_7719595_SNP [dm6]	G	A	1.545e^-4	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10437640	3R_10437640_SNP [dm3] 3R_14611918_SNP [dm6]	A	T	1.549e^-4	0.81	INTRON CG14853
2R	10544277	2R_10544277_SNP [dm3] 2R_14656772_SNP [dm6]	C	T	1.553e^-4	0.81	DOWNSTREAM Adgf-E INTERGENIC
3L	3699344	3L_3699344_SNP [dm3] 3L_3699344_SNP [dm6]	A	G	1.558e^-4	0.81	INTERGENIC
3L	4091291	3L_4091291_SNP [dm3] 3L_4091291_SNP [dm6]	C	A	1.561e^-4	0.81	UTR_3_PRIME CG14989 DOWNSTREAM CG14989
3R	18758721	3R_18758721_SNP [dm3] 3R_22932999_SNP [dm6]	G	A	1.561e^-4	0.81	INTRON klg
2L	16855766	2L_16855766_SNP [dm3] 2L_16855766_SNP [dm6]	G	A	1.563e^-4	0.81	INTRON CG31809
3R	14333074	3R_14333074_SNP [dm3] 3R_18507352_SNP [dm6]	G	A	1.563e^-4	0.81	UPSTREAM fru INTRON fru
3L	14954405	3L_14954405_SNP [dm3] 3L_14961305_SNP [dm6]	G	T	1.578e^-4	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24362223	3R_24362223_SNP [dm3] 3R_28536501_SNP [dm6]	C	T	1.581e^-4	0.81	INTRON Ppn
2R	12389779	2R_12389779_SNP [dm3] 2R_16502274_SNP [dm6]	A	G	1.608e^-4	0.81	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	21341350	3R_21341350_SNP [dm3] 3R_25515628_SNP [dm6]	G	T	1.609e^-4	0.81	UPSTREAM msi INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	22768774	3R_22768774_SNP [dm3] 3R_26943052_SNP [dm6]	T	C	1.612e^-4	0.81	SYNONYMOUS_CODING sda	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	6951579	2R_6951579_SNP [dm3] 2R_11064074_SNP [dm6]	A	G	1.613e^-4	0.81	INTRON luna	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5758251	2L_5758251_SNP [dm3] 2L_5758251_SNP [dm6]	C	A	1.614e^-4	0.81	INTRON CG11030
3R	25894705	3R_25894705_SNP [dm3] 3R_30068983_SNP [dm6]	C	G	1.619e^-4	0.81	INTRON sima
2L	3126389	2L_3126389_SNP [dm3] 2L_3126389_SNP [dm6]	C	T	1.626e^-4	0.81	NON_SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	9506593	2L_9506593_SNP [dm3] 2L_9506593_SNP [dm6]	G	T	1.630e^-4	0.81	INTRON CG33298
X	7619303	X_7619303_SNP [dm3] X_7725270_SNP [dm6]	A	C	1.633e^-4	0.81	NON_SYNONYMOUS_CODING Hira DOWNSTREAM NELF-B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25119684	3R_25119684_SNP [dm3] 3R_29293962_SNP [dm6]	T	C	1.637e^-4	0.81	UTR_3_PRIME CG14506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	14351051	3R_14351051_SNP [dm3] 3R_18525329_SNP [dm6]	G	A	1.642e^-4	0.81	INTRON fru	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	10437015	3R_10437015_SNP [dm3] 3R_14611293_SNP [dm6]	A	T	1.643e^-4	0.81	INTRON CG14853
X	7622608	X_7622608_SNP [dm3] X_7728575_SNP [dm6]	G	C	1.646e^-4	0.81	UPSTREAM CG12155 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	12663420	X_12663420_SNP [dm3] X_12769387_SNP [dm6]	T	C	1.646e^-4	0.81	INTRON CG3812	TF binding site BDTNP1_TFBS_twi
3R	12497505	3R_12497505_SNP [dm3] 3R_16671783_SNP [dm6]	C	T	1.647e^-4	0.81	INTRON Ubx
3R	24829701	3R_24829701_SNP [dm3] 3R_29003979_SNP [dm6]	C	G	1.652e^-4	0.81	INTRON wat
2L	21779550	2L_21779550_INS [dm3] 2L_21779550_INS [dm6]	C	CTATTCTTATTATC...	1.657e^-4	0.81	INTRON CG31612
2L	376777	2L_376777_SNP [dm3] 2L_376777_SNP [dm6]	G	A	1.659e^-4	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	19019176	X_19019176_SNP [dm3] X_19125143_SNP [dm6]	C	A	1.662e^-4	0.81	UTR_3_PRIME tgy UPSTREAM CG15882 DOWNSTREAM tgy
3L	17323053	3L_17323053_SNP [dm3] 3L_17329953_SNP [dm6]	A	T	1.668e^-4	0.81	UPSTREAM Or74a INTERGENIC
3L	20821277	3L_20821277_SNP [dm3] 3L_20828177_SNP [dm6]	C	T	1.677e^-4	0.81	UTR_5_PRIME Pka-R1 UPSTREAM Pka-R1 INTRON Pka-R1
3R	13682419	3R_13682419_SNP [dm3] 3R_17856697_SNP [dm6]	T	C	1.688e^-4	0.81	INTRON tinc
3R	13682437	3R_13682437_SNP [dm3] 3R_17856715_SNP [dm6]	G	C	1.688e^-4	0.81	INTRON tinc
X	3136990	X_3136990_SNP [dm3] X_3242957_SNP [dm6]	A	G	1.690e^-4	0.81	UPSTREAM ng3 DOWNSTREAM ng1 & 1 other INTRON dnc
2L	10785598	2L_10785598_SNP [dm3] 2L_10785598_SNP [dm6]	A	T	1.703e^-4	0.81	INTRON CG31869 EXON CR44582
3R	22160103	3R_22160103_SNP [dm3] 3R_26334381_SNP [dm6]	A	T	1.705e^-4	0.81	INTRON CG33970
X	9536672	X_9536672_SNP [dm3] X_9642639_SNP [dm6]	G	T	1.710e^-4	0.81	INTRON l_1_G0232	TF binding site mE1_TFBS_inv
3L	14919578	3L_14919578_SNP [dm3] 3L_14926478_SNP [dm6]	A	G	1.713e^-4	0.81	UTR_5_PRIME DCX-EMAP INTRON DCX-EMAP
2R	19404101	2R_19404101_SNP [dm3] 2R_23516578_SNP [dm6]	C	G	1.721e^-4	0.81	INTERGENIC
2L	16840396	2L_16840396_SNP [dm3] 2L_16840396_SNP [dm6]	T	C	1.723e^-4	0.81	UTR_3_PRIME SclA & 1 other INTRON SclA
3L	15483209	3L_15483209_SNP [dm3] 3L_15490109_SNP [dm6]	A	G	1.727e^-4	0.81	INTERGENIC
X	7622632	X_7622632_SNP [dm3] X_7728599_SNP [dm6]	A	G	1.743e^-4	0.81	UPSTREAM CG12155 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	20860404	2L_20860404_SNP [dm3] 2L_20860404_SNP [dm6]	C	T	1.750e^-4	0.81	INTRON CG9336
X	8222268	X_8222268_SNP [dm3] X_8328235_SNP [dm6]	A	T	1.750e^-4	0.81	INTRON nAChRalpha3
X	16823106	X_16823106_SNP [dm3] X_16929073_SNP [dm6]	A	G	1.754e^-4	0.81	INTRON CG4928
2L	9111772	2L_9111772_SNP [dm3] 2L_9111772_SNP [dm6]	G	C	1.756e^-4	0.81	UPSTREAM Or30a INTERGENIC
2R	6016574	2R_6016574_SNP [dm3] 2R_10129069_SNP [dm6]	G	A	1.774e^-4	0.81	INTRON gem	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	16923365	2R_16923365_SNP [dm3] 2R_21035860_SNP [dm6]	C	G	1.775e^-4	0.81	INTERGENIC
3L	9515093	3L_9515093_SNP [dm3] 3L_9521993_SNP [dm6]	C	G	1.775e^-4	0.81	INTRON CG33700
3R	5121954	3R_5121954_SNP [dm3] 3R_9296232_SNP [dm6]	A	G	1.787e^-4	0.81	INTRON CG8861
X	12850971	X_12850971_SNP [dm3] X_12956938_SNP [dm6]	G	T	1.790e^-4	0.81	INTRON hec
X	7613255	X_7613255_SNP [dm3] X_7719222_SNP [dm6]	T	C	1.803e^-4	0.81	INTERGENIC
2L	6534172	2L_6534172_SNP [dm3] 2L_6534172_SNP [dm6]	C	T	1.808e^-4	0.81	INTRON eya	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	11804667	2R_11804667_SNP [dm3] 2R_15917162_SNP [dm6]	T	G	1.829e^-4	0.81	DOWNSTREAM CR44373 INTRON sli	TF binding site mE1_TFBS_cad
2R	9127641	2R_9127641_SNP [dm3] 2R_13240136_SNP [dm6]	C	T	1.832e^-4	0.81	SYNONYMOUS_CODING GstE14 UPSTREAM CG4679	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9052774	2L_9052774_SNP [dm3] 2L_9052774_SNP [dm6]	G	T	1.833e^-4	0.81	UTR_3_PRIME CG31708
2L	1675714	2L_1675714_SNP [dm3] 2L_1675714_SNP [dm6]	T	A	1.834e^-4	0.81	INTRON chinmo
2L	1675720	2L_1675720_SNP [dm3] 2L_1675720_SNP [dm6]	C	G	1.834e^-4	0.81	INTRON chinmo
2L	21851919	2L_21851919_INS [dm3] 2L_21851919_INS [dm6]	T	TTCT	1.835e^-4	0.81	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	10272628	3R_10272628_SNP [dm3] 3R_14446906_SNP [dm6]	C	T	1.838e^-4	0.81	INTRON cv-c
X	7617605	X_7617605_SNP [dm3] X_7723572_SNP [dm6]	A	T	1.838e^-4	0.81	NON_SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	18282632	2R_18282632_SNP [dm3] 2R_22395127_SNP [dm6]	T	A	1.842e^-4	0.81	INTRON babos
3L	10265312	3L_10265312_SNP [dm3] 3L_10272212_SNP [dm6]	G	A	1.842e^-4	0.81	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	9817342	3R_9817342_INS [dm3] 3R_13991620_INS [dm6]	C	CCATG	1.843e^-4	0.81	INTRON rdx
3R	9817346	3R_9817346_INS [dm3] 3R_13991624_INS [dm6]	T	TGATT	1.843e^-4	0.81	INTRON rdx
3R	26618541	3R_26618541_SNP [dm3] 3R_30792819_SNP [dm6]	A	G	1.844e^-4	0.81	SYNONYMOUS_CODING wts	TF binding site mE1_TFBS_chinmo
X	7613947	X_7613947_SNP [dm3] X_7719914_SNP [dm6]	C	T	1.845e^-4	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15483300	3L_15483300_SNP [dm3] 3L_15490200_SNP [dm6]	A	C	1.846e^-4	0.81	INTERGENIC
3R	10213841	3R_10213841_SNP [dm3] 3R_14388119_SNP [dm6]	A	T	1.854e^-4	0.81	INTERGENIC
3L	6839692	3L_6839692_SNP [dm3] 3L_6846592_SNP [dm6]	C	G	1.854e^-4	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_Kr
3R	22782220	3R_22782220_SNP [dm3] 3R_26956498_SNP [dm6]	G	A	1.856e^-4	0.81	INTRON CG6330	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3L	17455391	3L_17455391_SNP [dm3] 3L_17462291_SNP [dm6]	C	T	1.859e^-4	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2705297	3L_2705297_SNP [dm3] 3L_2705297_SNP [dm6]	C	T	1.862e^-4	0.81	INTRON Fife
3L	13310290	3L_13310290_SNP [dm3] 3L_13317190_SNP [dm6]	T	G	1.863e^-4	0.81	INTERGENIC
X	21160844	X_21160844_SNP [dm3] X_21289817_SNP [dm6]	G	C	1.868e^-4	0.81	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9446671	2L_9446671_SNP [dm3] 2L_9446671_SNP [dm6]	A	C	1.879e^-4	0.81	INTRON numb	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
X	12665748	X_12665748_SNP [dm3] X_12771715_SNP [dm6]	C	T	1.880e^-4	0.81	UTR_3_PRIME CG3812 DOWNSTREAM CG32647 & 1 other
3R	5963561	3R_5963561_SNP [dm3] 3R_10137839_SNP [dm6]	T	C	1.894e^-4	0.81	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	16202260	3L_16202260_SNP [dm3] 3L_16209160_SNP [dm6]	A	C	1.898e^-4	0.81	INTERGENIC	TF binding site mE1_TFBS_cad
X	17952263	X_17952263_SNP [dm3] X_18058230_SNP [dm6]	A	G	1.902e^-4	0.81	INTRON Sh
2R	7063681	2R_7063681_INS [dm3] 2R_11176176_INS [dm6]	C	CCAGCTCTTGATGCCTTCC...	1.903e^-4	0.81	INTRON shn
2L	8558261	2L_8558261_DEL [dm3] 2L_8558261_DEL [dm6]	ACAT	A	1.905e^-4	0.81	INTRON Sema-1a	TF binding site mE1_TFBS_cad
2R	8136797	2R_8136797_SNP [dm3] 2R_12249292_SNP [dm6]	G	A	1.910e^-4	0.81	INTERGENIC
X	4475044	X_4475044_SNP [dm3] X_4581011_SNP [dm6]	G	A	1.911e^-4	0.81	INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13682812	3R_13682812_SNP [dm3] 3R_17857090_SNP [dm6]	G	C	1.914e^-4	0.81	INTRON tinc
3L	9515094	3L_9515094_SNP [dm3] 3L_9521994_SNP [dm6]	T	A	1.918e^-4	0.81	INTRON CG33700
2L	16239344	2L_16239344_SNP [dm3] 2L_16239344_SNP [dm6]	A	G	1.919e^-4	0.81	SYNONYMOUS_CODING CG42817
2L	437359	2L_437359_SNP [dm3] 2L_437359_SNP [dm6]	G	A	1.923e^-4	0.81	INTRON ex
3L	9509808	3L_9509808_SNP [dm3] 3L_9516708_SNP [dm6]	G	T	1.938e^-4	0.81	INTRON CG33700
2L	7202015	2L_7202015_SNP [dm3] 2L_7202015_SNP [dm6]	C	A	1.939e^-4	0.81	INTRON CG4502
X	14305173	X_14305173_SNP [dm3] X_14411140_SNP [dm6]	C	A	1.947e^-4	0.81	INTRON dpr8
2L	2021720	2L_2021720_SNP [dm3] 2L_2021720_SNP [dm6]	T	A	1.948e^-4	0.81	INTRON CG4238
X	3380974	X_3380974_SNP [dm3] X_3486941_SNP [dm6]	G	A	1.950e^-4	0.81	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3381085	X_3381085_SNP [dm3] X_3487052_SNP [dm6]	G	C	1.950e^-4	0.81	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11309234	X_11309234_SNP [dm3] X_11415201_SNP [dm6]	C	T	1.951e^-4	0.81	SYNONYMOUS_CODING Gr10a DOWNSTREAM Or10a	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	5395530	2R_5395530_SNP [dm3] 2R_9508025_SNP [dm6]	A	C	1.959e^-4	0.81	UTR_5_PRIME brp INTRON brp	TF binding site mE1_TFBS_Trl
2R	12078185	2R_12078185_SNP [dm3] 2R_16190680_SNP [dm6]	C	A	1.960e^-4	0.81	NON_SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3966356	3L_3966356_SNP [dm3] 3L_3966356_SNP [dm6]	T	C	1.968e^-4	0.81	INTERGENIC
3L	22200488	3L_22200488_INS [dm3] 3L_22207388_INS [dm6]	T	TT	1.968e^-4	0.81	INTRON olf413
2R	8151058	2R_8151058_SNP [dm3] 2R_12263553_SNP [dm6]	G	A	1.976e^-4	0.81	UPSTREAM Cam INTRON Cam
2L	18908808	2L_18908808_SNP [dm3] 2L_18908808_SNP [dm6]	G	T	1.978e^-4	0.81	INTERGENIC
3L	743084	3L_743084_INS [dm3] 3L_743084_INS [dm6]	T	TT	1.981e^-4	0.81	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	15077567	X_15077567_SNP [dm3] X_15183534_SNP [dm6]	A	G	1.982e^-4	0.81	INTRON CG43737
X	7615605	X_7615605_SNP [dm3] X_7721572_SNP [dm6]	T	C	1.985e^-4	0.81	UPSTREAM Hira INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10025688	3L_10025688_SNP [dm3] 3L_10032588_SNP [dm6]	A	T	2.004e^-4	0.81	INTRON dpr6
X	3035757	X_3035757_SNP [dm3] X_3141724_SNP [dm6]	A	T	2.007e^-4	0.81	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	7202010	2L_7202010_SNP [dm3] 2L_7202010_SNP [dm6]	C	T	2.007e^-4	0.81	INTRON CG4502
2R	18496192	2R_18496192_SNP [dm3] 2R_22608687_SNP [dm6]	T	C	2.007e^-4	0.81	SYNONYMOUS_CODING Vps20 DOWNSTREAM RpS16 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8908601	2R_8908601_SNP [dm3] 2R_13021096_SNP [dm6]	T	A	2.009e^-4	0.81	INTERGENIC	TF binding site mE1_TFBS_cad
3R	24132403	3R_24132403_SNP [dm3] 3R_28306681_SNP [dm6]	A	C	2.012e^-4	0.81	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	18480164	3R_18480164_SNP [dm3] 3R_22654442_SNP [dm6]	C	T	2.013e^-4	0.81	INTRON CG45058
2L	8448676	2L_8448676_SNP [dm3] 2L_8448676_SNP [dm6]	G	T	2.021e^-4	0.81	SYNONYMOUS_CODING U26
3L	10025690	3L_10025690_DEL [dm3] 3L_10032590_DEL [dm6]	TCAAACGTGATATGAAATAT...	A	2.022e^-4	0.81	INTRON dpr6
3L	7129112	3L_7129112_INS [dm3] 3L_7136012_INS [dm6]	G	GAAGAAGG	2.024e^-4	0.81	INTRON melt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22153955	3R_22153955_SNP [dm3] 3R_26328233_SNP [dm6]	A	T	2.026e^-4	0.81	INTRON CG33970
2L	262506	2L_262506_SNP [dm3] 2L_262506_SNP [dm6]	G	A	2.026e^-4	0.81	UTR_3_PRIME CG17075 DOWNSTREAM CG17075 INTRON CG3645 EXON CR44219
X	5661593	X_5661593_SNP [dm3] X_5767560_SNP [dm6]	C	T	2.027e^-4	0.81	SYNONYMOUS_CODING CG3097 INTRON CG42699	TF binding site mE1_TFBS_sens
3L	11843819	3L_11843819_SNP [dm3] 3L_11850719_SNP [dm6]	A	C	2.028e^-4	0.81	UTR_3_PRIME CG44837
X	7619130	X_7619130_SNP [dm3] X_7725097_SNP [dm6]	T	A	2.034e^-4	0.81	DOWNSTREAM NELF-B INTRON Hira	TF binding site mE1_TFBS_sens
2L	7202011	2L_7202011_SNP [dm3] 2L_7202011_SNP [dm6]	G	A	2.037e^-4	0.81	INTRON CG4502
2L	12325195	2L_12325195_INS [dm3] 2L_12325195_INS [dm6]	A	ACGTAAAGCAAAATATTTTC...	2.037e^-4	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10196368	3R_10196368_SNP [dm3] 3R_14370646_SNP [dm6]	T	A	2.065e^-4	0.81	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	536533	3L_536533_SNP [dm3] 3L_536533_SNP [dm6]	A	G	2.065e^-4	0.81	INTRON klar
2L	11654717	2L_11654717_SNP [dm3] 2L_11654717_SNP [dm6]	G	A	2.069e^-4	0.81	DOWNSTREAM CG4983 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	10438077	X_10438077_SNP [dm3] X_10544044_SNP [dm6]	A	T	2.071e^-4	0.81	INTRON spri
3L	15639667	3L_15639667_SNP [dm3] 3L_15646567_SNP [dm6]	C	G	2.072e^-4	0.81	INTRON comm3
2L	5413523	2L_5413523_SNP [dm3] 2L_5413523_SNP [dm6]	A	G	2.079e^-4	0.81	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16896018	3L_16896018_SNP [dm3] 3L_16902918_SNP [dm6]	G	A	2.087e^-4	0.81	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo
3L	3103926	3L_3103926_SNP [dm3] 3L_3103926_SNP [dm6]	C	T	2.098e^-4	0.81	INTRON Cht7
X	14121064	X_14121064_SNP [dm3] X_14227031_SNP [dm6]	G	A	2.100e^-4	0.81	SYNONYMOUS_CODING mRpL38	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2645067	3L_2645067_SNP [dm3] 3L_2645067_SNP [dm6]	C	T	2.116e^-4	0.81	UPSTREAM CG1143 INTERGENIC
3L	4011471	3L_4011471_SNP [dm3] 3L_4011471_SNP [dm6]	A	C	2.126e^-4	0.81	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	21160839	X_21160839_SNP [dm3] X_21289812_SNP [dm6]	T	C	2.137e^-4	0.81	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9457779	2R_9457779_SNP [dm3] 2R_13570274_SNP [dm6]	A	T	2.139e^-4	0.81	DOWNSTREAM CG42807 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
3L	6902842	3L_6902842_SNP [dm3] 3L_6909742_SNP [dm6]	C	T	2.140e^-4	0.81	INTERGENIC
3R	13139524	3R_13139524_SNP [dm3] 3R_17313802_SNP [dm6]	G	T	2.142e^-4	0.81	INTERGENIC
3L	709537	3L_709537_SNP [dm3] 3L_709537_SNP [dm6]	A	T	2.145e^-4	0.81	INTRON CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3R	26671686	3R_26671686_SNP [dm3] 3R_30845964_SNP [dm6]	T	A	2.153e^-4	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	12665890	X_12665890_SNP [dm3] X_12771857_SNP [dm6]	C	G	2.153e^-4	0.81	UTR_3_PRIME CG3812 & 1 other DOWNSTREAM CG3812
3R	14395022	3R_14395022_SNP [dm3] 3R_18569300_SNP [dm6]	G	A	2.153e^-4	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	17193388	3L_17193388_SNP [dm3] 3L_17200288_SNP [dm6]	T	A	2.168e^-4	0.81	INTRON Rbp6
3L	743080	3L_743080_SNP [dm3] 3L_743080_SNP [dm6]	T	A	2.170e^-4	0.81	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	713048	3L_713048_SNP [dm3] 3L_713048_SNP [dm6]	G	C	2.172e^-4	0.81	INTERGENIC	TF binding site mE1_TFBS_sens
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	2.179e^-4	0.81	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
3R	10272634	3R_10272634_SNP [dm3] 3R_14446912_SNP [dm6]	T	C	2.181e^-4	0.81	INTRON cv-c
X	17952258	X_17952258_SNP [dm3] X_18058225_SNP [dm6]	C	A	2.183e^-4	0.81	INTRON Sh
X	20561606	X_20561606_SNP [dm3] X_20690579_SNP [dm6]	C	T	2.188e^-4	0.81	UPSTREAM run EXON CR45610	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	6643090	X_6643090_INS [dm3] X_6749057_INS [dm6]	A	ACA	2.192e^-4	0.81	INTRON CG14439
3R	14293780	3R_14293780_DEL [dm3] 3R_18468058_DEL [dm6]	TTTT	T	2.197e^-4	0.81	INTRON fru
3R	22242029	3R_22242029_SNP [dm3] 3R_26416307_SNP [dm6]	G	A	2.199e^-4	0.81	DOWNSTREAM CG5432 INTERGENIC
3R	1931150	3R_1931150_INS [dm3] 3R_6105428_INS [dm6]	G	GCAATTACATCCAGCTCACA...	2.200e^-4	0.81	UPSTREAM CR44929 INTERGENIC	regulatory region REDfly_CRMs
X	17952259	X_17952259_SNP [dm3] X_18058226_SNP [dm6]	T	C	2.211e^-4	0.81	INTRON Sh
X	11320937	X_11320937_SNP [dm3] X_11426904_SNP [dm6]	G	C	2.219e^-4	0.81	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5650459	3L_5650459_SNP [dm3] 3L_5657359_SNP [dm6]	C	G	2.223e^-4	0.81	UTR_3_PRIME lin-28 UPSTREAM sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11843425	3L_11843425_SNP [dm3] 3L_11850325_SNP [dm6]	T	A	2.246e^-4	0.81	DOWNSTREAM CG44837 INTERGENIC
2R	9940463	2R_9940463_SNP [dm3] 2R_14052958_SNP [dm6]	G	C	2.257e^-4	0.81	INTRON mam
2L	5758264	2L_5758264_SNP [dm3] 2L_5758264_SNP [dm6]	A	C	2.257e^-4	0.81	INTRON CG11030	TF binding site mE1_TFBS_cad
3R	14293806	3R_14293806_SNP [dm3] 3R_18468084_SNP [dm6]	G	A	2.260e^-4	0.81	INTRON fru
3L	709549	3L_709549_SNP [dm3] 3L_709549_SNP [dm6]	A	T	2.264e^-4	0.81	SPLICE_SITE_REGION CkIIalpha-i3 INTRON CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
2L	15090500	2L_15090500_SNP [dm3] 2L_15090500_SNP [dm6]	T	A	2.265e^-4	0.81	INTRON CG15270
3L	10866281	3L_10866281_SNP [dm3] 3L_10873181_SNP [dm6]	G	A	2.267e^-4	0.81	SYNONYMOUS_CODING tna	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7754985	2R_7754985_SNP [dm3] 2R_11867480_SNP [dm6]	G	A	2.269e^-4	0.81	DOWNSTREAM CG13185 EXON CR42532
2L	19817600	2L_19817600_SNP [dm3] 2L_19817600_SNP [dm6]	A	C	2.269e^-4	0.81	INTRON sick	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	14157661	X_14157661_SNP [dm3] X_14263628_SNP [dm6]	C	T	2.275e^-4	0.81	SYNONYMOUS_CODING CG1461
2R	13557740	2R_13557740_SNP [dm3] 2R_17670235_SNP [dm6]	C	T	2.275e^-4	0.81	SYNONYMOUS_CODING CG30109 UPSTREAM CR44404 DOWNSTREAM eIF3-S8 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16517576	2R_16517576_SNP [dm3] 2R_20630071_SNP [dm6]	T	C	2.279e^-4	0.81	SYNONYMOUS_CODING Rcd6	TF binding site mE1_TFBS_chinmo
2R	3079221	2R_3079221_SNP [dm3] 2R_7191716_SNP [dm6]	C	A	2.280e^-4	0.81	INTRON pk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13272954	3L_13272954_SNP [dm3] 3L_13279854_SNP [dm6]	A	T	2.282e^-4	0.81	DOWNSTREAM caps & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25727862	3R_25727862_SNP [dm3] 3R_29902140_SNP [dm6]	G	T	2.286e^-4	0.81	INTRON CG31038
3R	9817323	3R_9817323_SNP [dm3] 3R_13991601_SNP [dm6]	T	A	2.287e^-4	0.81	INTRON rdx
2L	16759323	2L_16759323_SNP [dm3] 2L_16759323_SNP [dm6]	C	T	2.288e^-4	0.81	INTRON ppk17
3L	10842862	3L_10842862_SNP [dm3] 3L_10849762_SNP [dm6]	T	C	2.293e^-4	0.81	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	10428058	3R_10428058_SNP [dm3] 3R_14602336_SNP [dm6]	C	T	2.293e^-4	0.81	INTRON stumps	TF binding site mE1_TFBS_HSA
X	7635997	X_7635997_SNP [dm3] X_7741964_SNP [dm6]	C	G	2.299e^-4	0.81	INTERGENIC
3R	22236025	3R_22236025_SNP [dm3] 3R_26410303_SNP [dm6]	T	C	2.305e^-4	0.81	INTERGENIC
3L	16691072	3L_16691072_DEL [dm3] 3L_16697972_DEL [dm6]	AA	A	2.308e^-4	0.81	DOWNSTREAM CR45179 INTRON Lasp & 1 other
X	6643083	X_6643083_INS [dm3] X_6749050_INS [dm6]	T	TCAGAGAT	2.309e^-4	0.81	INTRON CG14439
X	7622137	X_7622137_SNP [dm3] X_7728104_SNP [dm6]	A	T	2.312e^-4	0.81	UPSTREAM CG12155 INTRON NELF-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	25752385	3R_25752385_SNP [dm3] 3R_29926663_SNP [dm6]	T	G	2.314e^-4	0.81	UPSTREAM Jon99Ci & 1 other INTERGENIC
3L	1103303	3L_1103303_INS [dm3] 3L_1103303_INS [dm6]	A	AACCGAT	2.316e^-4	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	22253533	3R_22253533_SNP [dm3] 3R_26427811_SNP [dm6]	C	A	2.327e^-4	0.81	UPSTREAM CR43434 INTRON CR31084
3R	4340520	3R_4340520_SNP [dm3] 3R_8514798_SNP [dm6]	T	A	2.327e^-4	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	412023	3L_412023_SNP [dm3] 3L_412023_SNP [dm6]	G	T	2.330e^-4	0.81	INTERGENIC
3R	7278942	3R_7278942_SNP [dm3] 3R_11453220_SNP [dm6]	A	G	2.334e^-4	0.81	SYNONYMOUS_CODING PGRP-LB INTRON CG17230	TF binding site mE1_TFBS_chinmo
X	8152386	X_8152386_SNP [dm3] X_8258353_SNP [dm6]	C	G	2.336e^-4	0.81	INTRON CG1632	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18542911	3L_18542911_SNP [dm3] 3L_18549811_SNP [dm6]	C	A	2.340e^-4	0.81	INTERGENIC
3R	25765336	3R_25765336_SNP [dm3] 3R_29939614_SNP [dm6]	T	C	2.347e^-4	0.81	SYNONYMOUS_CODING CG15523
3R	4361746	3R_4361746_SNP [dm3] 3R_8536024_SNP [dm6]	C	T	2.351e^-4	0.81	INTERGENIC
2L	16239646	2L_16239646_SNP [dm3] 2L_16239646_SNP [dm6]	T	C	2.355e^-4	0.81	INTRON CG42817
3L	3966428	3L_3966428_SNP [dm3] 3L_3966428_SNP [dm6]	C	A	2.355e^-4	0.81	INTERGENIC
X	21171393	X_21171393_SNP [dm3] X_21300366_SNP [dm6]	G	C	2.356e^-4	0.81	UTR_5_PRIME CG1718
2R	8134408	2R_8134408_SNP [dm3] 2R_12246903_SNP [dm6]	G	T	2.358e^-4	0.81	EXON CR44315
3L	11277473	3L_11277473_SNP [dm3] 3L_11284373_SNP [dm6]	G	A	2.361e^-4	0.81	UPSTREAM CR45404 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	5129982	3R_5129982_SNP [dm3] 3R_9304260_SNP [dm6]	C	G	2.362e^-4	0.81	INTRON CG8861
3L	3910709	3L_3910709_SNP [dm3] 3L_3910709_SNP [dm6]	G	T	2.368e^-4	0.81	UTR_3_PRIME Eip63F-1 UPSTREAM mge DOWNSTREAM Eip63F-1
3R	22229175	3R_22229175_SNP [dm3] 3R_26403453_SNP [dm6]	A	G	2.373e^-4	0.81	NON_SYNONYMOUS_CODING ppk15
3R	18480162	3R_18480162_SNP [dm3] 3R_22654440_SNP [dm6]	A	C	2.375e^-4	0.81	INTRON CG45058
2L	7000929	2L_7000929_SNP [dm3] 2L_7000929_SNP [dm6]	T	A	2.379e^-4	0.81	INTRON uif
3R	21344585	3R_21344585_SNP [dm3] 3R_25518863_SNP [dm6]	G	T	2.383e^-4	0.81	INTRON msi	TF binding site mE1_TFBS_Trl
3L	7257559	3L_7257559_SNP [dm3] 3L_7264459_SNP [dm6]	G	A	2.383e^-4	0.81	UPSTREAM CG14830 INTERGENIC
X	5489798	X_5489798_SNP [dm3] X_5595765_SNP [dm6]	A	T	2.390e^-4	0.81	INTRON Vsx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3L	709523	3L_709523_SNP [dm3] 3L_709523_SNP [dm6]	T	A	2.404e^-4	0.81	INTRON CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
2L	19896738	2L_19896738_SNP [dm3] 2L_19896738_SNP [dm6]	T	A	2.405e^-4	0.81	INTRON sick
3L	10025750	3L_10025750_SNP [dm3] 3L_10032650_SNP [dm6]	G	A	2.436e^-4	0.81	INTRON dpr6
2R	8136809	2R_8136809_SNP [dm3] 2R_12249304_SNP [dm6]	G	T	2.446e^-4	0.81	INTERGENIC
3R	18480179	3R_18480179_SNP [dm3] 3R_22654457_SNP [dm6]	G	A	2.454e^-4	0.81	INTRON CG45058
3R	10574955	3R_10574955_SNP [dm3] 3R_14749233_SNP [dm6]	T	C	2.468e^-4	0.81	UPSTREAM jvl & 1 other INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	25588806	3R_25588806_SNP [dm3] 3R_29763084_SNP [dm6]	A	G	2.468e^-4	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7721690	3L_7721690_SNP [dm3] 3L_7728590_SNP [dm6]	T	G	2.469e^-4	0.81	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
2L	18328109	2L_18328109_SNP [dm3] 2L_18328109_SNP [dm6]	C	G	2.477e^-4	0.81	INTRON Fas3
3L	7129114	3L_7129114_SNP [dm3] 3L_7136014_SNP [dm6]	G	A	2.479e^-4	0.81	INTRON melt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7270458	2L_7270458_SNP [dm3] 2L_7270458_SNP [dm6]	A	G	2.486e^-4	0.81	INTRON Wnt4
X	9287766	X_9287766_SNP [dm3] X_9393733_SNP [dm6]	T	C	2.494e^-4	0.81	INTRON mgl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	27122951	3R_27122951_SNP [dm3] 3R_31297229_SNP [dm6]	C	G	2.498e^-4	0.81	INTERGENIC
3L	2645491	3L_2645491_SNP [dm3] 3L_2645491_SNP [dm6]	A	T	2.499e^-4	0.81	INTRON CG1143
2R	18475324	2R_18475324_DEL [dm3] 2R_22587819_DEL [dm6]	GA	G	2.501e^-4	0.81	INTRON dnr1
2R	20946369	2R_20946369_SNP [dm3] 2R_25058846_SNP [dm6]	C	T	2.502e^-4	0.81	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3L	9483249	3L_9483249_SNP [dm3] 3L_9490149_SNP [dm6]	G	T	2.503e^-4	0.81	UTR_3_PRIME CG32037 UPSTREAM CG32036	TF binding site mE1_TFBS_cad
3R	16196724	3R_16196724_SNP [dm3] 3R_20371002_SNP [dm6]	C	G	2.504e^-4	0.81	INTERGENIC
3L	1103308	3L_1103308_SNP [dm3] 3L_1103308_SNP [dm6]	A	T	2.507e^-4	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	11686631	2L_11686631_DEL [dm3] 2L_11686631_DEL [dm6]	ATTACAGGTAATA...	T	2.512e^-4	0.81	INTERGENIC
2R	18004262	2R_18004262_SNP [dm3] 2R_22116757_SNP [dm6]	G	T	2.513e^-4	0.81	UPSTREAM Vrp1 DOWNSTREAM CG30281 INTRON Vrp1
2R	16864219	2R_16864219_SNP [dm3] 2R_20976714_SNP [dm6]	G	A	2.516e^-4	0.81	UPSTREAM CG9344 DOWNSTREAM CG15650 INTRON CG34115	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	4147037	2L_4147037_SNP [dm3] 2L_4147037_SNP [dm6]	A	T	2.519e^-4	0.81	INTERGENIC
X	10517804	X_10517804_SNP [dm3] X_10623771_SNP [dm6]	A	G	2.520e^-4	0.81	UTR_3_PRIME CG9806 UPSTREAM Rab9Db
X	13136787	X_13136787_SNP [dm3] X_13242754_SNP [dm6]	C	T	2.526e^-4	0.81	INTRON mew	TF binding site BDTNP1_TFBS_da
3L	14929523	3L_14929523_SNP [dm3] 3L_14936423_SNP [dm6]	T	A	2.526e^-4	0.81	INTRON DCX-EMAP
3L	5569344	3L_5569344_SNP [dm3] 3L_5576244_SNP [dm6]	A	G	2.528e^-4	0.81	INTRON Msr-110
2L	21775574	2L_21775574_INS [dm3] 2L_21775574_INS [dm6]	A	ATC	2.533e^-4	0.81	INTRON CG31612	TF binding site mE1_TFBS_HSA transposable element FlyBase
3L	13953220	3L_13953220_SNP [dm3] 3L_13960120_SNP [dm6]	G	A	2.534e^-4	0.81	INTRON CG32137
2R	18010265	2R_18010265_INS [dm3] 2R_22122760_INS [dm6]	T	TC	2.538e^-4	0.81	UPSTREAM mei-S332 & 1 other INTRON mei-S332	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17353856	3R_17353856_SNP [dm3] 3R_21528134_SNP [dm6]	C	T	2.540e^-4	0.81	UTR_3_PRIME CG7956 DOWNSTREAM CG7956	TF binding site BDTNP1_TFBS_slp1
3L	1103402	3L_1103402_SNP [dm3] 3L_1103402_SNP [dm6]	A	T	2.543e^-4	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	4473277	X_4473277_INS [dm3] X_4579244_INS [dm6]	A	AA	2.546e^-4	0.81	INTRON CR32773
2R	19513588	2R_19513588_SNP [dm3] 2R_23626065_SNP [dm6]	G	A	2.547e^-4	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19690855	X_19690855_SNP [dm3] X_19796822_SNP [dm6]	G	C	2.558e^-4	0.81	INTERGENIC
2L	16239657	2L_16239657_SNP [dm3] 2L_16239657_SNP [dm6]	C	T	2.568e^-4	0.81	INTRON CG42817
3L	711108	3L_711108_SNP [dm3] 3L_711108_SNP [dm6]	G	T	2.575e^-4	0.81	NON_SYNONYMOUS_CODING CG13896 UPSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
2R	16340634	2R_16340634_SNP [dm3] 2R_20453129_SNP [dm6]	A	G	2.584e^-4	0.81	INTRON CG12484
X	21081580	X_21081580_SNP [dm3] X_21210553_SNP [dm6]	A	G	2.586e^-4	0.81	INTRON CG32521
2R	16565617	2R_16565617_SNP [dm3] 2R_20678112_SNP [dm6]	C	A	2.588e^-4	0.81	INTERGENIC
3R	24829189	3R_24829189_SNP [dm3] 3R_29003467_SNP [dm6]	C	T	2.599e^-4	0.81	INTRON wat
2R	11177864	2R_11177864_SNP [dm3] 2R_15290359_SNP [dm6]	A	G	2.606e^-4	0.81	INTRON Trpm
3L	9483340	3L_9483340_SNP [dm3] 3L_9490240_SNP [dm6]	A	C	2.614e^-4	0.81	INTRON CG32037	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	17672196	3L_17672196_SNP [dm3] 3L_17679096_SNP [dm6]	A	G	2.617e^-4	0.81	INTRON CG34251
3L	15483291	3L_15483291_SNP [dm3] 3L_15490191_SNP [dm6]	A	T	2.618e^-4	0.81	INTERGENIC
3L	7257565	3L_7257565_SNP [dm3] 3L_7264465_SNP [dm6]	C	T	2.620e^-4	0.81	UPSTREAM CG14830 INTERGENIC
2R	11683570	2R_11683570_SNP [dm3] 2R_15796065_SNP [dm6]	T	G	2.621e^-4	0.81	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	743033	3L_743033_SNP [dm3] 3L_743033_SNP [dm6]	C	T	2.622e^-4	0.81	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	2867868	3R_2867868_SNP [dm3] 3R_7042146_SNP [dm6]	G	A	2.623e^-4	0.81	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16341636	X_16341636_DEL [dm3] X_16447603_DEL [dm6]	TGACAGCGCGCGAGTACAA...	T	2.631e^-4	0.81	UTR_3_PRIME CG34015 UPSTREAM eIF-2alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2552680	X_2552680_SNP [dm3] X_2658647_SNP [dm6]	A	C	2.631e^-4	0.81	UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	638038	2L_638038_SNP [dm3] 2L_638038_SNP [dm6]	G	C	2.635e^-4	0.81	INTERGENIC
2R	19522673	2R_19522673_SNP [dm3] 2R_23635150_SNP [dm6]	G	T	2.639e^-4	0.81	INTRON retn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	9536660	X_9536660_SNP [dm3] X_9642627_SNP [dm6]	T	A	2.640e^-4	0.81	INTRON l_1_G0232	TF binding site mE1_TFBS_inv
2L	7343130	2L_7343130_SNP [dm3] 2L_7343130_SNP [dm6]	G	T	2.657e^-4	0.81	INTRON Wnt6
3L	6059888	3L_6059888_SNP [dm3] 3L_6066788_SNP [dm6]	T	C	2.663e^-4	0.81	SYNONYMOUS_CODING CG42269	TF binding site mE1_TFBS_chinmo
3L	8929326	3L_8929326_SNP [dm3] 3L_8936226_SNP [dm6]	C	T	2.663e^-4	0.81	NON_SYNONYMOUS_CODING CG43783 DOWNSTREAM orb2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	7622142	X_7622142_INS [dm3] X_7728109_INS [dm6]	A	AA	2.665e^-4	0.81	UPSTREAM CG12155 INTRON NELF-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	12745588	3R_12745588_SNP [dm3] 3R_16919866_SNP [dm6]	A	G	2.667e^-4	0.81	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	9509743	3L_9509743_SNP [dm3] 3L_9516643_SNP [dm6]	C	A	2.668e^-4	0.81	INTRON CG33700
3L	9317825	3L_9317825_SNP [dm3] 3L_9324725_SNP [dm6]	T	C	2.670e^-4	0.81	INTERGENIC
3R	14344614	3R_14344614_SNP [dm3] 3R_18518892_SNP [dm6]	T	A	2.676e^-4	0.81	INTRON fru
3R	12502299	3R_12502299_SNP [dm3] 3R_16676577_SNP [dm6]	C	A	2.679e^-4	0.81	INTRON Ubx	TF binding site mE1_TFBS_cad
X	10517805	X_10517805_SNP [dm3] X_10623772_SNP [dm6]	G	C	2.679e^-4	0.81	UTR_3_PRIME CG9806 UPSTREAM Rab9Db
3L	9201306	3L_9201306_SNP [dm3] 3L_9208206_SNP [dm6]	C	T	2.682e^-4	0.81	UTR_5_PRIME Slc45-1 UPSTREAM Slc45-1
3L	9512504	3L_9512504_SNP [dm3] 3L_9519404_SNP [dm6]	A	T	2.683e^-4	0.81	INTRON CG33700
2L	2707543	2L_2707543_SNP [dm3] 2L_2707543_SNP [dm6]	C	A	2.686e^-4	0.81	INTRON CG31690
2L	7934932	2L_7934932_SNP [dm3] 2L_7934932_SNP [dm6]	A	C	2.693e^-4	0.81	INTRON Snoo
3L	10025717	3L_10025717_DEL [dm3] 3L_10032617_DEL [dm6]	GCTTTTGTTTAGTC...	G	2.699e^-4	0.81	INTRON dpr6
3L	14816170	3L_14816170_SNP [dm3] 3L_14823070_SNP [dm6]	A	T	2.701e^-4	0.81	INTRON CG17839
2R	14678570	2R_14678570_SNP [dm3] 2R_18791065_SNP [dm6]	C	T	2.703e^-4	0.81	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9494569	2R_9494569_SNP [dm3] 2R_13607064_SNP [dm6]	A	G	2.705e^-4	0.81	INTERGENIC
3R	4187880	3R_4187880_SNP [dm3] 3R_8362158_SNP [dm6]	T	C	2.708e^-4	0.81	NON_SYNONYMOUS_CODING CG9684 UPSTREAM CG7963	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	13926754	3R_13926754_SNP [dm3] 3R_18101032_SNP [dm6]	C	T	2.713e^-4	0.81	INTRON sr
3L	8532579	3L_8532579_SNP [dm3] 3L_8539479_SNP [dm6]	T	A	2.713e^-4	0.81	INTERGENIC
2L	17333728	2L_17333728_SNP [dm3] 2L_17333728_SNP [dm6]	G	T	2.714e^-4	0.81	INTERGENIC
X	17946678	X_17946678_SNP [dm3] X_18052645_SNP [dm6]	G	T	2.720e^-4	0.81	INTRON Sh	TF binding site BDTNP1_TFBS_dl
3L	794541	3L_794541_SNP [dm3] 3L_794541_SNP [dm6]	C	G	2.724e^-4	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7613156	X_7613156_SNP [dm3] X_7719123_SNP [dm6]	A	T	2.727e^-4	0.81	INTERGENIC
3L	709440	3L_709440_SNP [dm3] 3L_709440_SNP [dm6]	G	C	2.728e^-4	0.81	NON_SYNONYMOUS_CODING CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
2R	15460518	2R_15460518_SNP [dm3] 2R_19573013_SNP [dm6]	A	G	2.729e^-4	0.81	INTRON sm	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	20080617	3L_20080617_SNP [dm3] 3L_20087517_SNP [dm6]	A	C	2.732e^-4	0.81	INTRON sNPF-R
X	14121085	X_14121085_SNP [dm3] X_14227052_SNP [dm6]	C	A	2.732e^-4	0.81	SYNONYMOUS_CODING mRpL38	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	14305198	X_14305198_SNP [dm3] X_14411165_SNP [dm6]	T	A	2.736e^-4	0.81	INTRON dpr8
3R	10304959	3R_10304959_SNP [dm3] 3R_14479237_SNP [dm6]	G	A	2.741e^-4	0.81	INTRON cv-c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3L	14835275	3L_14835275_INS [dm3] 3L_14842175_INS [dm6]	T	TTGCAA	2.751e^-4	0.81	INTRON CG17839
3L	11276715	3L_11276715_SNP [dm3] 3L_11283615_SNP [dm6]	A	C	2.752e^-4	0.81	INTERGENIC
3L	11276725	3L_11276725_SNP [dm3] 3L_11283625_SNP [dm6]	A	T	2.752e^-4	0.81	INTERGENIC
X	17061761	X_17061761_SNP [dm3] X_17167728_SNP [dm6]	T	A	2.753e^-4	0.81	INTRON baz
3R	25323777	3R_25323777_SNP [dm3] 3R_29498055_SNP [dm6]	A	G	2.755e^-4	0.81	DOWNSTREAM Trc8 INTRON CG2010	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	10847556	2R_10847556_SNP [dm3] 2R_14960051_SNP [dm6]	T	G	2.760e^-4	0.81	INTRON aPKC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2021719	2L_2021719_SNP [dm3] 2L_2021719_SNP [dm6]	G	A	2.761e^-4	0.81	INTRON CG4238
3R	26618205	3R_26618205_SNP [dm3] 3R_30792483_SNP [dm6]	C	T	2.763e^-4	0.81	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
3L	8391974	3L_8391974_SNP [dm3] 3L_8398874_SNP [dm6]	G	A	2.765e^-4	0.81	INTRON CG7120
X	743728	X_743728_SNP [dm3] X_849695_SNP [dm6]	C	T	2.765e^-4	0.81	INTRON CG43867
3R	5137887	3R_5137887_SNP [dm3] 3R_9312165_SNP [dm6]	A	G	2.766e^-4	0.81	INTRON CG8861
3L	12532444	3L_12532444_SNP [dm3] 3L_12539344_SNP [dm6]	C	T	2.768e^-4	0.81	DOWNSTREAM sowah INTRON sowah
3R	17823921	3R_17823921_SNP [dm3] 3R_21998199_SNP [dm6]	C	T	2.777e^-4	0.81	INTRON Eip93F
3L	7461509	3L_7461509_SNP [dm3] 3L_7468409_SNP [dm6]	G	T	2.778e^-4	0.81	UTR_3_PRIME CG42660 & 2 others
2R	14944446	2R_14944446_SNP [dm3] 2R_19056941_SNP [dm6]	C	T	2.780e^-4	0.81	INTERGENIC
3L	9661340	3L_9661340_SNP [dm3] 3L_9668240_SNP [dm6]	C	G	2.782e^-4	0.81	INTRON fry	TF binding site mE1_TFBS_cad
3R	4362491	3R_4362491_SNP [dm3] 3R_8536769_SNP [dm6]	A	G	2.793e^-4	0.81	INTERGENIC
3L	11843421	3L_11843421_SNP [dm3] 3L_11850321_SNP [dm6]	G	C	2.796e^-4	0.81	DOWNSTREAM CG44837 INTERGENIC
X	5897074	X_5897074_SNP [dm3] X_6003041_SNP [dm6]	T	C	2.802e^-4	0.81	INTRON CR44498
3L	7467554	3L_7467554_SNP [dm3] 3L_7474454_SNP [dm6]	G	A	2.803e^-4	0.81	INTERGENIC
X	20218600	X_20218600_SNP [dm3] X_20347573_SNP [dm6]	T	A	2.805e^-4	0.81	INTERGENIC
X	14090881	X_14090881_SNP [dm3] X_14196848_SNP [dm6]	T	C	2.806e^-4	0.81	SYNONYMOUS_CODING yl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16823020	3L_16823020_DEL [dm3] 3L_16829920_DEL [dm6]	TGCAGTTTTGCAAT...	T	2.808e^-4	0.81	UPSTREAM CG13024 INTERGENIC
X	7617570	X_7617570_SNP [dm3] X_7723537_SNP [dm6]	C	A	2.809e^-4	0.81	SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	12419989	2R_12419989_SNP [dm3] 2R_16532484_SNP [dm6]	C	G	2.819e^-4	0.81	UTR_3_PRIME Sema-2a
3R	25912708	3R_25912708_SNP [dm3] 3R_30086986_SNP [dm6]	C	A	2.820e^-4	0.81	INTRON sima
2L	13211544	2L_13211544_SNP [dm3] 2L_13211544_SNP [dm6]	T	C	2.827e^-4	0.81	NON_SYNONYMOUS_CODING CG15482 DOWNSTREAM Pect & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7045208	2R_7045208_SNP [dm3] 2R_11157703_SNP [dm6]	C	A	2.832e^-4	0.81	INTRON CG13229
2R	13505970	2R_13505970_SNP [dm3] 2R_17618465_SNP [dm6]	C	A	2.832e^-4	0.81	UPSTREAM CG44403 INTRON CG10936
3L	14955046	3L_14955046_SNP [dm3] 3L_14961946_SNP [dm6]	T	C	2.835e^-4	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10606729	3L_10606729_SNP [dm3] 3L_10613629_SNP [dm6]	T	C	2.844e^-4	0.81	INTERGENIC
3L	7257568	3L_7257568_SNP [dm3] 3L_7264468_SNP [dm6]	G	A	2.853e^-4	0.81	UPSTREAM CG14830 INTERGENIC
3R	21876295	3R_21876295_SNP [dm3] 3R_26050573_SNP [dm6]	T	C	2.864e^-4	0.81	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17672015	3L_17672015_SNP [dm3] 3L_17678915_SNP [dm6]	A	T	2.873e^-4	0.81	INTRON CG34251
X	21923107	X_21923107_SNP [dm3] X_22521271_SNP [dm6]	A	C	2.875e^-4	0.81	INTRON CG17600
3L	4737892	3L_4737892_SNP [dm3] 3L_4737892_SNP [dm6]	T	C	2.877e^-4	0.81	INTRON RhoGEF64C
3L	6710275	3L_6710275_SNP [dm3] 3L_6717175_SNP [dm6]	G	A	2.878e^-4	0.81	INTRON ple	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9446658	2L_9446658_SNP [dm3] 2L_9446658_SNP [dm6]	A	C	2.878e^-4	0.81	INTRON numb	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	9446659	2L_9446659_SNP [dm3] 2L_9446659_SNP [dm6]	A	C	2.878e^-4	0.81	INTRON numb	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
3L	10852647	3L_10852647_SNP [dm3] 3L_10859547_SNP [dm6]	T	A	2.882e^-4	0.81	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_kn
3R	14046462	3R_14046462_SNP [dm3] 3R_18220740_SNP [dm6]	C	A	2.885e^-4	0.81	UPSTREAM CG7183 DOWNSTREAM mTerf5 INTRON CG7988	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	6016548	2R_6016548_SNP [dm3] 2R_10129043_SNP [dm6]	C	T	2.889e^-4	0.81	INTRON gem	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	709565	3L_709565_SNP [dm3] 3L_709565_SNP [dm6]	C	T	2.893e^-4	0.81	NON_SYNONYMOUS_CODING CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3L	742992	3L_742992_DEL [dm3] 3L_742992_DEL [dm6]	ATGGTTTTTGATAACTAA...	A	2.895e^-4	0.81	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	20561531	X_20561531_SNP [dm3] X_20690504_SNP [dm6]	A	T	2.897e^-4	0.81	UPSTREAM run EXON CR45610	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	17333597	2L_17333597_SNP [dm3] 2L_17333597_SNP [dm6]	A	G	2.900e^-4	0.81	INTERGENIC
3L	12568589	3L_12568589_SNP [dm3] 3L_12575489_SNP [dm6]	G	T	2.901e^-4	0.81	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9483255	3L_9483255_SNP [dm3] 3L_9490155_SNP [dm6]	T	C	2.909e^-4	0.81	UTR_3_PRIME CG32037 UPSTREAM CG32036	TF binding site mE1_TFBS_cad
2R	12193614	2R_12193614_SNP [dm3] 2R_16306109_SNP [dm6]	G	A	2.911e^-4	0.81	EXON CR45232
X	20868531	X_20868531_SNP [dm3] X_20997504_SNP [dm6]	G	T	2.915e^-4	0.81	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	5145048	3R_5145048_SNP [dm3] 3R_9319326_SNP [dm6]	G	A	2.916e^-4	0.81	INTRON CG8861
2R	19024800	2R_19024800_SNP [dm3] 2R_23137277_SNP [dm6]	G	A	2.919e^-4	0.81	INTERGENIC
2L	16619032	2L_16619032_SNP [dm3] 2L_16619032_SNP [dm6]	A	C	2.920e^-4	0.81	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	677254	3L_677254_SNP [dm3] 3L_677254_SNP [dm6]	T	A	2.927e^-4	0.81	DOWNSTREAM CG17129 INTERGENIC
3R	10436941	3R_10436941_SNP [dm3] 3R_14611219_SNP [dm6]	G	C	2.928e^-4	0.81	INTRON CG14853
3L	13549841	3L_13549841_SNP [dm3] 3L_13556741_SNP [dm6]	A	G	2.932e^-4	0.81	INTRON bru-3
2L	14460423	2L_14460423_SNP [dm3] 2L_14460423_SNP [dm6]	T	A	2.957e^-4	0.813	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12970762	3R_12970762_SNP [dm3] 3R_17145040_SNP [dm6]	A	T	2.972e^-4	0.813	UTR_3_PRIME m-cup DOWNSTREAM m-cup
3R	9823760	3R_9823760_SNP [dm3] 3R_13998038_SNP [dm6]	T	C	2.972e^-4	0.813	INTRON rdx	TF binding site mE1_TFBS_HSA
3R	26669113	3R_26669113_SNP [dm3] 3R_30843391_SNP [dm6]	A	T	2.974e^-4	0.813	INTERGENIC	TF binding site mE1_TFBS_cad
2R	19008611	2R_19008611_SNP [dm3] 2R_23121088_SNP [dm6]	G	A	2.978e^-4	0.813	INTERGENIC
3R	11131180	3R_11131180_SNP [dm3] 3R_15305458_SNP [dm6]	T	G	2.979e^-4	0.813	SYNONYMOUS_CODING Tm1 DOWNSTREAM Tm1 INTRON Tm1	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1686134	3R_1686134_SNP [dm3] 3R_5860412_SNP [dm6]	A	C	2.982e^-4	0.813	SPLICE_SITE_REGION CG2017 INTRON CG2017
2L	5270617	2L_5270617_SNP [dm3] 2L_5270617_SNP [dm6]	A	G	2.984e^-4	0.813	DOWNSTREAM Cyp4ac3 INTRON tkv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	2772237	3R_2772237_SNP [dm3] 3R_6946515_SNP [dm6]	G	A	2.989e^-4	0.813	INTRON Antp	TF binding site mE1_TFBS_cad
2L	606477	2L_606477_SNP [dm3] 2L_606477_SNP [dm6]	A	G	2.991e^-4	0.813	DOWNSTREAM CR43648 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4951156	2R_4951156_SNP [dm3] 2R_9063651_SNP [dm6]	T	A	3.000e^-4	0.813	INTRON ana	regulatory region REDfly_CRMs
2L	1542729	2L_1542729_SNP [dm3] 2L_1542729_SNP [dm6]	C	T	3.002e^-4	0.813	INTERGENIC
2L	9443469	2L_9443469_SNP [dm3] 2L_9443469_SNP [dm6]	C	T	3.004e^-4	0.813	INTRON numb
2R	16688318	2R_16688318_SNP [dm3] 2R_20800813_SNP [dm6]	A	G	3.006e^-4	0.813	INTERGENIC
3R	7987958	3R_7987958_INS [dm3] 3R_12162236_INS [dm6]	G	GGCCAACGAACCAGTCAG...	3.009e^-4	0.813	DOWNSTREAM Cpn INTERGENIC
2L	13696626	2L_13696626_SNP [dm3] 2L_13696626_SNP [dm6]	G	A	3.018e^-4	0.813	INTRON CG31814
3R	27136665	3R_27136665_SNP [dm3] 3R_31310943_SNP [dm6]	G	A	3.023e^-4	0.813	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	8590702	3L_8590702_SNP [dm3] 3L_8597602_SNP [dm6]	G	A	3.024e^-4	0.813	NON_SYNONYMOUS_CODING CG43078	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	6489643	X_6489643_SNP [dm3] X_6595610_SNP [dm6]	C	A	3.026e^-4	0.813	SYNONYMOUS_CODING Pat1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9430498	2L_9430498_SNP [dm3] 2L_9430498_SNP [dm6]	T	A	3.034e^-4	0.813	UPSTREAM FucTB & 1 other INTRON FucTB
3L	837739	3L_837739_INS [dm3] 3L_837739_INS [dm6]	T	TA	3.036e^-4	0.813	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	18487687	2L_18487687_SNP [dm3] 2L_18487687_SNP [dm6]	A	T	3.043e^-4	0.813	UTR_3_PRIME CG10176 DOWNSTREAM kon	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
3L	14985464	3L_14985464_SNP [dm3] 3L_14992364_SNP [dm6]	C	T	3.045e^-4	0.813	UTR_5_PRIME Zip71B DOWNSTREAM mnd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9177943	3L_9177943_SNP [dm3] 3L_9184843_SNP [dm6]	A	C	3.051e^-4	0.814	INTERGENIC
X	18402742	X_18402742_SNP [dm3] X_18508709_SNP [dm6]	A	G	3.061e^-4	0.815	INTRON Ggt-1	TF binding site mE1_TFBS_chinmo mE1_TFBS_cnc
3L	3143885	3L_3143885_SNP [dm3] 3L_3143885_SNP [dm6]	G	C	3.076e^-4	0.816	UTR_5_PRIME CG1291 UPSTREAM CG11537	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	19825351	2L_19825351_SNP [dm3] 2L_19825351_SNP [dm6]	A	G	3.085e^-4	0.816	INTRON sick
2L	12527584	2L_12527584_SNP [dm3] 2L_12527584_SNP [dm6]	A	T	3.094e^-4	0.816	INTRON bun	TF binding site BDTNP1_TFBS_dl
3L	4762195	3L_4762195_DEL [dm3] 3L_4762195_DEL [dm6]	GGAATTTATATTAA...	T	3.098e^-4	0.816	INTRON RhoGEF64C
3R	13600203	3R_13600203_SNP [dm3] 3R_17774481_SNP [dm6]	C	T	3.110e^-4	0.816	UTR_5_PRIME CG43102 INTRON CG43102
3R	13600449	3R_13600449_SNP [dm3] 3R_17774727_SNP [dm6]	C	T	3.110e^-4	0.816	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl
2L	14749130	2L_14749130_SNP [dm3] 2L_14749130_SNP [dm6]	G	A	3.110e^-4	0.816	INTERGENIC
2L	9445125	2L_9445125_SNP [dm3] 2L_9445125_SNP [dm6]	T	C	3.117e^-4	0.816	INTRON numb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11575711	2R_11575711_SNP [dm3] 2R_15688206_SNP [dm6]	G	T	3.121e^-4	0.816	NON_SYNONYMOUS_CODING Cep89 SPLICE_SITE_REGION Cep89 DOWNSTREAM Ranbp11	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1860931	2L_1860931_SNP [dm3] 2L_1860931_SNP [dm6]	G	T	3.122e^-4	0.816	INTRON CG31663
3L	11599845	3L_11599845_SNP [dm3] 3L_11606745_SNP [dm6]	T	C	3.132e^-4	0.816	SYNONYMOUS_CODING CG6091
2R	4951152	2R_4951152_SNP [dm3] 2R_9063647_SNP [dm6]	T	G	3.135e^-4	0.816	INTRON ana	regulatory region REDfly_CRMs
3R	16529875	3R_16529875_SNP [dm3] 3R_20704153_SNP [dm6]	G	T	3.136e^-4	0.816	INTRON Oamb	TF binding site mE1_TFBS_inv
2R	13555652	2R_13555652_SNP [dm3] 2R_17668147_SNP [dm6]	C	A	3.157e^-4	0.816	SYNONYMOUS_CODING eIF3-S8	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5122899	3L_5122899_SNP [dm3] 3L_5129799_SNP [dm6]	T	A	3.159e^-4	0.816	SYNONYMOUS_CODING CG4597
3L	711035	3L_711035_SNP [dm3] 3L_711035_SNP [dm6]	A	G	3.161e^-4	0.816	SYNONYMOUS_CODING CG13896 UPSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	3532941	3L_3532941_SNP [dm3] 3L_3532941_SNP [dm6]	T	C	3.177e^-4	0.816	INTRON Eip63E
3L	6903932	3L_6903932_SNP [dm3] 3L_6910832_SNP [dm6]	C	G	3.178e^-4	0.816	INTERGENIC
2R	14271036	2R_14271036_SNP [dm3] 2R_18383531_SNP [dm6]	A	T	3.184e^-4	0.816	UPSTREAM IM1 & 1 other INTERGENIC
X	22332606	X_22332606_SNP [dm3] X_22930770_SNP [dm6]	C	G	3.188e^-4	0.816	INTERGENIC
3L	3872313	3L_3872313_SNP [dm3] 3L_3872313_SNP [dm6]	A	G	3.193e^-4	0.816	INTERGENIC
3R	19283761	3R_19283761_SNP [dm3] 3R_23458039_SNP [dm6]	A	T	3.195e^-4	0.816	INTRON CG4374
2L	20991674	2L_20991674_SNP [dm3] 2L_20991674_SNP [dm6]	C	A	3.200e^-4	0.816	INTRON CG42238
3L	11508729	3L_11508729_DEL [dm3] 3L_11515629_DEL [dm6]	CCC	C	3.200e^-4	0.816	INTRON CG7512
3L	10699904	3L_10699904_INS [dm3] 3L_10706804_INS [dm6]	A	AA	3.202e^-4	0.816	INTERGENIC
2R	14269786	2R_14269786_SNP [dm3] 2R_18382281_SNP [dm6]	G	T	3.205e^-4	0.816	UPSTREAM CG43202 DOWNSTREAM IM23 INTERGENIC
3R	20478904	3R_20478904_SNP [dm3] 3R_24653182_SNP [dm6]	T	C	3.207e^-4	0.816	SYNONYMOUS_CODING ash2 DOWNSTREAM CG31125
3L	708682	3L_708682_SNP [dm3] 3L_708682_SNP [dm6]	A	T	3.208e^-4	0.816	UTR_3_PRIME CkIIalpha-i3 UPSTREAM CG13895	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
3L	17217720	3L_17217720_SNP [dm3] 3L_17224620_SNP [dm6]	A	G	3.210e^-4	0.816	INTRON Rbp6
3L	10279902	3L_10279902_SNP [dm3] 3L_10286802_SNP [dm6]	A	G	3.213e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17672226	3L_17672226_SNP [dm3] 3L_17679126_SNP [dm6]	C	A	3.220e^-4	0.816	INTRON CG34251
2L	9105311	2L_9105311_SNP [dm3] 2L_9105311_SNP [dm6]	G	T	3.222e^-4	0.816	INTERGENIC
2R	11340700	2R_11340700_SNP [dm3] 2R_15453195_SNP [dm6]	T	G	3.226e^-4	0.816	INTRON CG43729
3L	4152861	3L_4152861_SNP [dm3] 3L_4152861_SNP [dm6]	G	A	3.230e^-4	0.816	DOWNSTREAM CG1299 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5452736	X_5452736_SNP [dm3] X_5558703_SNP [dm6]	C	T	3.238e^-4	0.816	INTRON Vsx2
X	17952266	X_17952266_SNP [dm3] X_18058233_SNP [dm6]	G	T	3.243e^-4	0.816	INTRON Sh
3L	22751254	3L_22751254_SNP [dm3] 3L_22758154_SNP [dm6]	A	G	3.245e^-4	0.816	INTRON SPoCk	TF binding site mE1_TFBS_HSA
2L	14043664	2L_14043664_SNP [dm3] 2L_14043664_SNP [dm6]	T	C	3.247e^-4	0.816	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6601300	2L_6601300_SNP [dm3] 2L_6601300_SNP [dm6]	T	A	3.263e^-4	0.816	UPSTREAM CG11319 INTERGENIC
3L	2645026	3L_2645026_SNP [dm3] 3L_2645026_SNP [dm6]	T	A	3.264e^-4	0.816	UPSTREAM CG1143 INTERGENIC
2R	16688646	2R_16688646_SNP [dm3] 2R_20801141_SNP [dm6]	G	C	3.265e^-4	0.816	INTERGENIC
3L	3966618	3L_3966618_DEL [dm3] 3L_3966618_DEL [dm6]	CCGCTGTCC	C	3.271e^-4	0.816	INTERGENIC
3R	10306571	3R_10306571_SNP [dm3] 3R_14480849_SNP [dm6]	T	G	3.275e^-4	0.816	UTR_5_PRIME cv-c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	4841343	3L_4841343_SNP [dm3] 3L_4841343_SNP [dm6]	A	C	3.276e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	14182626	X_14182626_SNP [dm3] X_14288593_SNP [dm6]	G	A	3.276e^-4	0.816	DOWNSTREAM Muc12Ea INTRON CG9400
3L	1103414	3L_1103414_SNP [dm3] 3L_1103414_SNP [dm6]	T	C	3.278e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	14841983	X_14841983_SNP [dm3] X_14947950_SNP [dm6]	A	G	3.282e^-4	0.816	INTRON pdgy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15413677	X_15413677_SNP [dm3] X_15519644_SNP [dm6]	C	G	3.286e^-4	0.816	INTRON Ac13E
3R	15767069	3R_15767069_SNP [dm3] 3R_19941347_SNP [dm6]	G	A	3.289e^-4	0.816	INTRON Hs6st
X	20868361	X_20868361_SNP [dm3] X_20997334_SNP [dm6]	T	C	3.293e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14271043	2R_14271043_DEL [dm3] 2R_18383538_DEL [dm6]	TAATGTCTTC	T	3.296e^-4	0.816	UPSTREAM IM1 & 1 other INTERGENIC
3L	16961056	3L_16961056_SNP [dm3] 3L_16967956_SNP [dm6]	C	G	3.303e^-4	0.816	UTR_3_PRIME Nc73EF
2L	7562937	2L_7562937_SNP [dm3] 2L_7562937_SNP [dm6]	C	A	3.304e^-4	0.816	INTRON RapGAP1
3L	11223898	3L_11223898_SNP [dm3] 3L_11230798_SNP [dm6]	G	T	3.311e^-4	0.816	DOWNSTREAM CR45405 & 1 other INTERGENIC
2L	3825626	2L_3825626_SNP [dm3] 2L_3825626_SNP [dm6]	A	T	3.315e^-4	0.816	UPSTREAM slp1 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	7625848	X_7625848_INS [dm3] X_7731815_INS [dm6]	G	GGTC	3.318e^-4	0.816	UTR_3_PRIME Pdp DOWNSTREAM CG12155
3L	15488911	3L_15488911_SNP [dm3] 3L_15495811_SNP [dm6]	A	T	3.321e^-4	0.816	UPSTREAM CG12355 & 1 other INTERGENIC
2R	16287970	2R_16287970_SNP [dm3] 2R_20400465_SNP [dm6]	A	G	3.335e^-4	0.816	INTERGENIC
X	14190581	X_14190581_INS [dm3] X_14296548_INS [dm6]	T	TCT	3.336e^-4	0.816	INTERGENIC
3L	5152409	3L_5152409_DEL [dm3] 3L_5159309_DEL [dm6]	GTG	G	3.345e^-4	0.816	UTR_3_PRIME shep
X	20262202	X_20262202_SNP [dm3] X_20391175_SNP [dm6]	C	A	3.350e^-4	0.816	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	606389	2L_606389_SNP [dm3] 2L_606389_SNP [dm6]	C	T	3.351e^-4	0.816	EXON CR43648	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10868009	3L_10868009_SNP [dm3] 3L_10874909_SNP [dm6]	C	T	3.355e^-4	0.816	UTR_3_PRIME tna DOWNSTREAM tna	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	14157477	X_14157477_SNP [dm3] X_14263444_SNP [dm6]	A	G	3.364e^-4	0.816	SPLICE_SITE_REGION CG1461 INTRON CG1461
2R	16688595	2R_16688595_SNP [dm3] 2R_20801090_SNP [dm6]	A	T	3.365e^-4	0.816	INTERGENIC
2L	11686657	2L_11686657_SNP [dm3] 2L_11686657_SNP [dm6]	T	C	3.382e^-4	0.816	INTERGENIC
3R	18780271	3R_18780271_SNP [dm3] 3R_22954549_SNP [dm6]	G	A	3.386e^-4	0.816	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	12522429	3L_12522429_SNP [dm3] 3L_12529329_SNP [dm6]	A	G	3.388e^-4	0.816	INTRON nst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	8697403	2L_8697403_SNP [dm3] 2L_8697403_SNP [dm6]	T	G	3.402e^-4	0.816	INTRON Hnf4
3L	14925731	3L_14925731_MNP [dm3] 3L_14932631_MNP [dm6]	TGTA	ATGG	3.408e^-4	0.816	INTRON DCX-EMAP
2R	8138196	2R_8138196_SNP [dm3] 2R_12250691_SNP [dm6]	A	G	3.415e^-4	0.816	INTERGENIC
2R	8137554	2R_8137554_SNP [dm3] 2R_12250049_SNP [dm6]	G	A	3.417e^-4	0.816	INTERGENIC
2R	13556727	2R_13556727_SNP [dm3] 2R_17669222_SNP [dm6]	A	T	3.417e^-4	0.816	UTR_3_PRIME eIF3-S8 UPSTREAM CG30108 & 1 other DOWNSTREAM eIF3-S8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
2R	3080414	2R_3080414_SNP [dm3] 2R_7192909_SNP [dm6]	C	A	3.419e^-4	0.816	UTR_5_PRIME pk INTRON pk	TF binding site mE1_TFBS_cad
3R	6299522	3R_6299522_SNP [dm3] 3R_10473800_SNP [dm6]	C	T	3.429e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	1196886	X_1196886_SNP [dm3] X_1302853_SNP [dm6]	T	C	3.440e^-4	0.816	INTRON DAAM	TF binding site mE1_TFBS_chinmo
2L	6841546	2L_6841546_SNP [dm3] 2L_6841546_SNP [dm6]	A	G	3.449e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4737859	3L_4737859_SNP [dm3] 3L_4737859_SNP [dm6]	A	G	3.452e^-4	0.816	INTRON RhoGEF64C
X	18454882	X_18454882_SNP [dm3] X_18560849_SNP [dm6]	G	A	3.457e^-4	0.816	INTRON Bx
2L	7300717	2L_7300717_SNP [dm3] 2L_7300717_SNP [dm6]	C	T	3.461e^-4	0.816	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	4950732	2R_4950732_DEL [dm3] 2R_9063227_DEL [dm6]	TT	T	3.464e^-4	0.816	INTRON ana	regulatory region REDfly_CRMs
3L	14816333	3L_14816333_SNP [dm3] 3L_14823233_SNP [dm6]	G	A	3.465e^-4	0.816	INTRON CG17839
3R	24133165	3R_24133165_SNP [dm3] 3R_28307443_SNP [dm6]	A	G	3.467e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	16237338	2L_16237338_SNP [dm3] 2L_16237338_SNP [dm6]	C	G	3.469e^-4	0.816	INTRON CG42817
3R	10435018	3R_10435018_SNP [dm3] 3R_14609296_SNP [dm6]	T	G	3.471e^-4	0.816	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	3719215	3R_3719215_SNP [dm3] 3R_7893493_SNP [dm6]	A	G	3.486e^-4	0.816	INTRON mRpS9 & 1 other
2R	20191493	2R_20191493_SNP [dm3] 2R_24303970_SNP [dm6]	G	A	3.489e^-4	0.816	INTERGENIC	regulatory region REDfly_CRMs
3L	14406650	3L_14406650_SNP [dm3] 3L_14413550_SNP [dm6]	A	T	3.490e^-4	0.816	DOWNSTREAM CG3919 INTRON bbg
3L	2645041	3L_2645041_SNP [dm3] 3L_2645041_SNP [dm6]	G	T	3.491e^-4	0.816	UPSTREAM CG1143 INTERGENIC
X	18265153	X_18265153_SNP [dm3] X_18371120_SNP [dm6]	G	T	3.492e^-4	0.816	UTR_5_PRIME CrebB UPSTREAM CrebB INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	7408586	2R_7408586_SNP [dm3] 2R_11521081_SNP [dm6]	C	T	3.492e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	22909511	2L_22909511_SNP [dm3] 2L_23016779_SNP [dm6]	G	A	3.507e^-4	0.816	INTRON Cht3
2R	6795353	2R_6795353_SNP [dm3] 2R_10907848_SNP [dm6]	C	T	3.511e^-4	0.816	INTERGENIC
2L	9104481	2L_9104481_SNP [dm3] 2L_9104481_SNP [dm6]	T	A	3.514e^-4	0.816	INTERGENIC
3L	14556612	3L_14556612_SNP [dm3] 3L_14563512_SNP [dm6]	A	G	3.519e^-4	0.816	DOWNSTREAM CG34039 INTERGENIC	TF binding site mE1_TFBS_Kr
X	5646808	X_5646808_SNP [dm3] X_5752775_SNP [dm6]	C	G	3.521e^-4	0.816	DOWNSTREAM CG4078 & 1 other INTRON CG15772	TF binding site mE1_TFBS_cad
3L	14926532	3L_14926532_DEL [dm3] 3L_14933432_DEL [dm6]	AACGAAA	A	3.529e^-4	0.816	INTRON DCX-EMAP
3L	7726328	3L_7726328_SNP [dm3] 3L_7733228_SNP [dm6]	T	C	3.530e^-4	0.816	DOWNSTREAM Snmp2 INTRON CG32373
2L	606430	2L_606430_SNP [dm3] 2L_606430_SNP [dm6]	A	G	3.535e^-4	0.816	DOWNSTREAM CR43648 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5742546	X_5742546_SNP [dm3] X_5848513_SNP [dm6]	T	C	3.548e^-4	0.816	INTERGENIC
2L	7527684	2L_7527684_SNP [dm3] 2L_7527684_SNP [dm6]	A	T	3.553e^-4	0.816	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14135339	3L_14135339_SNP [dm3] 3L_14142239_SNP [dm6]	A	T	3.565e^-4	0.816	INTERGENIC	regulatory region REDfly_CRMs
3L	14835265	3L_14835265_SNP [dm3] 3L_14842165_SNP [dm6]	T	C	3.568e^-4	0.816	INTRON CG17839
3R	10811113	3R_10811113_SNP [dm3] 3R_14985391_SNP [dm6]	G	A	3.568e^-4	0.816	INTERGENIC
3R	6253185	3R_6253185_SNP [dm3] 3R_10427463_SNP [dm6]	G	C	3.569e^-4	0.816	INTERGENIC
3L	18124962	3L_18124962_SNP [dm3] 3L_18131862_SNP [dm6]	G	A	3.570e^-4	0.816	SYNONYMOUS_CODING Cyp312a1
3L	9555349	3L_9555349_SNP [dm3] 3L_9562249_SNP [dm6]	A	G	3.572e^-4	0.816	INTRON CG42673
3L	11223911	3L_11223911_SNP [dm3] 3L_11230811_SNP [dm6]	C	T	3.572e^-4	0.816	DOWNSTREAM CR45405 & 1 other INTERGENIC
3L	837721	3L_837721_SNP [dm3] 3L_837721_SNP [dm6]	C	G	3.576e^-4	0.816	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
X	11409369	X_11409369_SNP [dm3] X_11515336_SNP [dm6]	T	G	3.579e^-4	0.816	INTRON Drak	TF binding site mE1_TFBS_Kr
3L	16245081	3L_16245081_SNP [dm3] 3L_16251981_SNP [dm6]	G	T	3.580e^-4	0.816	SYNONYMOUS_CODING CG13055	TF binding site mE1_TFBS_chinmo
2L	512739	2L_512739_SNP [dm3] 2L_512739_SNP [dm6]	T	G	3.594e^-4	0.816	INTRON ush	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
3L	22883797	3L_22883797_SNP [dm3] 3L_22890697_SNP [dm6]	A	G	3.599e^-4	0.816	INTRON slif	transposable element FlyBase
2R	4956236	2R_4956236_INS [dm3] 2R_9068731_INS [dm6]	A	AA	3.604e^-4	0.816	UPSTREAM ana INTRON ana
2R	10096977	2R_10096977_SNP [dm3] 2R_14209472_SNP [dm6]	C	T	3.612e^-4	0.816	INTRON Sox15	regulatory region REDfly_CRMs
2R	13645470	2R_13645470_SNP [dm3] 2R_17757965_SNP [dm6]	C	A	3.620e^-4	0.816	INTRON HLH54F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18262665	X_18262665_SNP [dm3] X_18368632_SNP [dm6]	T	G	3.633e^-4	0.816	INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	4545922	3L_4545922_SNP [dm3] 3L_4545922_SNP [dm6]	G	A	3.638e^-4	0.816	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18496239	2R_18496239_SNP [dm3] 2R_22608734_SNP [dm6]	G	A	3.641e^-4	0.816	SYNONYMOUS_CODING Vps20 DOWNSTREAM RpS16 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1413583	3L_1413583_SNP [dm3] 3L_1413583_SNP [dm6]	C	T	3.655e^-4	0.816	DOWNSTREAM CG9168 INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25128569	3R_25128569_DEL [dm3] 3R_29302847_DEL [dm6]	GG	G	3.660e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	713356	3L_713356_SNP [dm3] 3L_713356_SNP [dm6]	G	A	3.664e^-4	0.816	DOWNSTREAM CR45411 INTERGENIC	TF binding site mE1_TFBS_sens
3L	11276731	3L_11276731_SNP [dm3] 3L_11283631_SNP [dm6]	A	G	3.666e^-4	0.816	INTERGENIC
3R	6105593	3R_6105593_SNP [dm3] 3R_10279871_SNP [dm6]	C	T	3.672e^-4	0.816	INTRON CG43143
3R	23378255	3R_23378255_SNP [dm3] 3R_27552533_SNP [dm6]	C	T	3.674e^-4	0.816	INTRON Klp98A	TF binding site mE1_TFBS_cad
3L	287105	3L_287105_SNP [dm3] 3L_287105_SNP [dm6]	G	T	3.676e^-4	0.816	NON_SYNONYMOUS_CODING RhoGEF3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12415207	2L_12415207_SNP [dm3] 2L_12415207_SNP [dm6]	A	G	3.685e^-4	0.816	INTRON vir-1
2L	6791732	2L_6791732_SNP [dm3] 2L_6791732_SNP [dm6]	G	T	3.686e^-4	0.816	SYNONYMOUS_CODING nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8178778	3L_8178778_SNP [dm3] 3L_8185678_SNP [dm6]	C	T	3.697e^-4	0.816	UPSTREAM ERR INTRON ERR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2L	18944951	2L_18944951_SNP [dm3] 2L_18944951_SNP [dm6]	T	C	3.703e^-4	0.816	UPSTREAM ssp3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	10811112	3R_10811112_SNP [dm3] 3R_14985390_SNP [dm6]	T	C	3.705e^-4	0.816	INTERGENIC
2R	10821694	2R_10821694_SNP [dm3] 2R_14934189_SNP [dm6]	C	A	3.705e^-4	0.816	UPSTREAM CG10253 DOWNSTREAM CG12853 INTRON CG10253	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	4825443	2L_4825443_SNP [dm3] 2L_4825443_SNP [dm6]	C	G	3.705e^-4	0.816	INTRON CG15628
3R	10436192	3R_10436192_SNP [dm3] 3R_14610470_SNP [dm6]	G	T	3.708e^-4	0.816	INTRON CG14853
3L	5234188	3L_5234188_SNP [dm3] 3L_5241088_SNP [dm6]	C	G	3.709e^-4	0.816	INTRON shep
2R	10294490	2R_10294490_SNP [dm3] 2R_14406985_SNP [dm6]	G	A	3.719e^-4	0.816	INTERGENIC
2R	12976309	2R_12976309_SNP [dm3] 2R_17088804_SNP [dm6]	T	G	3.722e^-4	0.816	SYNONYMOUS_CODING Sply
2R	12389763	2R_12389763_SNP [dm3] 2R_16502258_SNP [dm6]	G	T	3.723e^-4	0.816	INTRON Sema-2a	TF binding site BDTNP1_TFBS_twi
3L	11900217	3L_11900217_SNP [dm3] 3L_11907117_SNP [dm6]	T	G	3.723e^-4	0.816	INTRON CG44837
X	8633305	X_8633305_SNP [dm3] X_8739272_SNP [dm6]	A	T	3.725e^-4	0.816	INTERGENIC
3R	26618196	3R_26618196_SNP [dm3] 3R_30792474_SNP [dm6]	C	T	3.727e^-4	0.816	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
2R	3492549	2R_3492549_SNP [dm3] 2R_7605044_SNP [dm6]	C	A	3.730e^-4	0.816	INTRON CG1358	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14917683	X_14917683_DEL [dm3] X_15023650_DEL [dm6]	TC	T	3.735e^-4	0.816	UPSTREAM be INTRON hiw	TF binding site mE1_TFBS_Trl transposable element FlyBase
3L	12055408	3L_12055408_SNP [dm3] 3L_12062308_SNP [dm6]	G	A	3.739e^-4	0.816	INTRON rols	TF binding site BDTNP1_TFBS_da
2L	17289541	2L_17289541_SNP [dm3] 2L_17289541_SNP [dm6]	C	T	3.741e^-4	0.816	INTERGENIC
2L	9105664	2L_9105664_SNP [dm3] 2L_9105664_SNP [dm6]	G	A	3.751e^-4	0.816	INTERGENIC
2L	19816618	2L_19816618_SNP [dm3] 2L_19816618_SNP [dm6]	G	A	3.763e^-4	0.816	UPSTREAM snRNA:U2:38ABa DOWNSTREAM snRNA:U5:38ABb INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	14271079	2R_14271079_MNP [dm3] 2R_18383574_MNP [dm6]	ACA	CAG	3.771e^-4	0.816	UPSTREAM IM1 & 2 others INTERGENIC
3L	672619	3L_672619_SNP [dm3] 3L_672619_SNP [dm6]	T	C	3.773e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_cad
2L	14150313	2L_14150313_SNP [dm3] 2L_14150313_SNP [dm6]	T	C	3.777e^-4	0.816	INTRON CG17341
2L	4106411	2L_4106411_SNP [dm3] 2L_4106411_SNP [dm6]	T	A	3.777e^-4	0.816	INTRON ed
2R	19553962	2R_19553962_SNP [dm3] 2R_23666439_SNP [dm6]	G	A	3.792e^-4	0.816	UPSTREAM Pde8 INTRON Pde8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	27136626	3R_27136626_SNP [dm3] 3R_31310904_SNP [dm6]	G	T	3.795e^-4	0.816	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	13739147	X_13739147_SNP [dm3] X_13845114_SNP [dm6]	A	G	3.801e^-4	0.816	INTRON AMPdeam	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu
3R	12898355	3R_12898355_SNP [dm3] 3R_17072633_SNP [dm6]	A	G	3.805e^-4	0.816	UTR_5_PRIME Ns1 UPSTREAM mRpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14678576	2R_14678576_SNP [dm3] 2R_18791071_SNP [dm6]	C	A	3.809e^-4	0.816	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11530467	2R_11530467_SNP [dm3] 2R_15642962_SNP [dm6]	T	A	3.819e^-4	0.816	INTRON CG42524
2L	9105472	2L_9105472_SNP [dm3] 2L_9105472_SNP [dm6]	A	T	3.824e^-4	0.816	INTERGENIC
X	892036	X_892036_SNP [dm3] X_998003_SNP [dm6]	T	A	3.826e^-4	0.816	INTERGENIC
2L	9463956	2L_9463956_SNP [dm3] 2L_9463956_SNP [dm6]	C	A	3.827e^-4	0.816	UTR_3_PRIME numb DOWNSTREAM numb
X	11320946	X_11320946_SNP [dm3] X_11426913_SNP [dm6]	T	G	3.838e^-4	0.816	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	606405	2L_606405_SNP [dm3] 2L_606405_SNP [dm6]	A	C	3.847e^-4	0.816	EXON CR43648	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13687918	2R_13687918_INS [dm3] 2R_17800413_INS [dm6]	C	CGCACAC	3.851e^-4	0.816	UTR_3_PRIME Dhit UPSTREAM grh DOWNSTREAM CR45270	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	13310278	3L_13310278_SNP [dm3] 3L_13317178_SNP [dm6]	C	G	3.859e^-4	0.816	INTERGENIC
3R	6253280	3R_6253280_SNP [dm3] 3R_10427558_SNP [dm6]	T	A	3.861e^-4	0.816	INTERGENIC
3R	22253197	3R_22253197_SNP [dm3] 3R_26427475_SNP [dm6]	T	G	3.868e^-4	0.816	INTRON CR31084
3L	2645044	3L_2645044_SNP [dm3] 3L_2645044_SNP [dm6]	T	G	3.869e^-4	0.816	UPSTREAM CG1143 INTERGENIC
3L	9686786	3L_9686786_SNP [dm3] 3L_9693686_SNP [dm6]	C	T	3.870e^-4	0.816	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	19435034	3R_19435034_SNP [dm3] 3R_23609312_SNP [dm6]	C	G	3.874e^-4	0.816	INTRON CG31145
3L	2646310	3L_2646310_SNP [dm3] 3L_2646310_SNP [dm6]	T	C	3.877e^-4	0.816	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17894354	2R_17894354_SNP [dm3] 2R_22006849_SNP [dm6]	A	G	3.877e^-4	0.816	INTRON CG34370
3R	5121948	3R_5121948_SNP [dm3] 3R_9296226_SNP [dm6]	C	A	3.881e^-4	0.816	INTRON CG8861
2L	1239660	2L_1239660_SNP [dm3] 2L_1239660_SNP [dm6]	G	A	3.887e^-4	0.816	UPSTREAM CG5397 INTERGENIC
3R	24132597	3R_24132597_SNP [dm3] 3R_28306875_SNP [dm6]	A	T	3.887e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	7467600	3L_7467600_SNP [dm3] 3L_7474500_SNP [dm6]	T	C	3.892e^-4	0.816	INTERGENIC
3L	1740510	3L_1740510_SNP [dm3] 3L_1740510_SNP [dm6]	C	A	3.904e^-4	0.816	INTRON Gk
X	14678933	X_14678933_SNP [dm3] X_14784900_SNP [dm6]	A	C	3.908e^-4	0.816	UTR_3_PRIME Ag5r UPSTREAM Ag5r2 DOWNSTREAM Ag5r
2R	13557062	2R_13557062_SNP [dm3] 2R_17669557_SNP [dm6]	T	G	3.917e^-4	0.816	SYNONYMOUS_CODING CG30108 UPSTREAM CG30109 DOWNSTREAM eIF3-S8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
2R	7902194	2R_7902194_SNP [dm3] 2R_12014689_SNP [dm6]	T	G	3.928e^-4	0.816	UPSTREAM CR44306 INTRON otk
3L	7721688	3L_7721688_SNP [dm3] 3L_7728588_SNP [dm6]	A	G	3.934e^-4	0.816	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
X	3381344	X_3381344_SNP [dm3] X_3487311_SNP [dm6]	T	C	3.936e^-4	0.816	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_sens
3L	7257545	3L_7257545_SNP [dm3] 3L_7264445_SNP [dm6]	T	A	3.946e^-4	0.816	UPSTREAM CG14830 INTERGENIC
2L	4152712	2L_4152712_SNP [dm3] 2L_4152712_SNP [dm6]	C	G	3.949e^-4	0.816	INTERGENIC
3L	19516540	3L_19516540_SNP [dm3] 3L_19523440_SNP [dm6]	G	A	3.949e^-4	0.816	INTRON Cpr76Bc
X	4461691	X_4461691_SNP [dm3] X_4567658_SNP [dm6]	G	A	3.951e^-4	0.816	INTRON CR32773
X	21128698	X_21128698_SNP [dm3] X_21257671_SNP [dm6]	G	A	3.960e^-4	0.816	INTRON CG32521
X	8156039	X_8156039_SNP [dm3] X_8262006_SNP [dm6]	A	T	3.964e^-4	0.816	INTRON CG1632
3L	20080577	3L_20080577_SNP [dm3] 3L_20087477_SNP [dm6]	T	A	3.979e^-4	0.816	INTRON sNPF-R
2R	17451450	2R_17451450_SNP [dm3] 2R_21563945_SNP [dm6]	G	C	3.982e^-4	0.816	INTRON CG10440
2L	18813039	2L_18813039_SNP [dm3] 2L_18813039_SNP [dm6]	T	A	3.983e^-4	0.816	UTR_5_PRIME CG42305 & 1 other
3R	16529907	3R_16529907_SNP [dm3] 3R_20704185_SNP [dm6]	T	A	3.984e^-4	0.816	INTRON Oamb	TF binding site mE1_TFBS_inv
2L	8807137	2L_8807137_SNP [dm3] 2L_8807137_SNP [dm6]	T	C	3.991e^-4	0.816	INTERGENIC
X	11320947	X_11320947_SNP [dm3] X_11426914_SNP [dm6]	T	C	3.997e^-4	0.816	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12068858	3L_12068858_SNP [dm3] 3L_12075758_SNP [dm6]	A	G	4.002e^-4	0.816	INTRON Sema-5c
3L	17672022	3L_17672022_SNP [dm3] 3L_17678922_SNP [dm6]	C	A	4.009e^-4	0.816	INTRON CG34251
2R	10836983	2R_10836983_SNP [dm3] 2R_14949478_SNP [dm6]	T	A	4.019e^-4	0.816	INTRON aPKC
3R	17319697	3R_17319697_SNP [dm3] 3R_21493975_SNP [dm6]	G	T	4.022e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8215546	2L_8215546_SNP [dm3] 2L_8215546_SNP [dm6]	A	G	4.026e^-4	0.816	UPSTREAM CG8349 DOWNSTREAM CG8353 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	8215560	2L_8215560_SNP [dm3] 2L_8215560_SNP [dm6]	A	T	4.026e^-4	0.816	UPSTREAM CG8349 DOWNSTREAM CG8353 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	14694738	3L_14694738_SNP [dm3] 3L_14701638_SNP [dm6]	A	G	4.028e^-4	0.816	NON_SYNONYMOUS_CODING CG17177 INTRON ome
2L	13704857	2L_13704857_SNP [dm3] 2L_13704857_SNP [dm6]	A	G	4.030e^-4	0.816	INTRON CG31814	TF binding site BDTNP1_TFBS_twi
2R	14271099	2R_14271099_SNP [dm3] 2R_18383594_SNP [dm6]	G	A	4.033e^-4	0.816	UPSTREAM IM1 & 2 others INTERGENIC
2R	14671796	2R_14671796_SNP [dm3] 2R_18784291_SNP [dm6]	G	A	4.039e^-4	0.816	INTRON CG15080	enhancer mE1_CBP_Enhancers
3R	19283797	3R_19283797_SNP [dm3] 3R_23458075_SNP [dm6]	G	A	4.044e^-4	0.816	INTRON CG4374
2L	268796	2L_268796_DEL [dm3] 2L_268796_DEL [dm6]	AA	A	4.046e^-4	0.816	UPSTREAM CG3345 INTRON CG3645
X	7617550	X_7617550_SNP [dm3] X_7723517_SNP [dm6]	T	C	4.046e^-4	0.816	SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	13990762	3L_13990762_SNP [dm3] 3L_13997662_SNP [dm6]	G	A	4.046e^-4	0.816	NON_SYNONYMOUS_CODING CG17361 DOWNSTREAM CG17359	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12533674	2R_12533674_SNP [dm3] 2R_16646169_SNP [dm6]	A	C	4.047e^-4	0.816	SYNONYMOUS_CODING gprs UTR_3_PRIME gprs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	7614792	X_7614792_SNP [dm3] X_7720759_SNP [dm6]	A	T	4.054e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9490546	2L_9490546_SNP [dm3] 2L_9490546_SNP [dm6]	A	T	4.056e^-4	0.816	DOWNSTREAM Gdi INTERGENIC
2R	18769488	2R_18769488_SNP [dm3] 2R_22881965_SNP [dm6]	G	A	4.059e^-4	0.816	DOWNSTREAM PIP5K59B & 1 other INTRON CG3501	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20262200	X_20262200_SNP [dm3] X_20391173_SNP [dm6]	G	A	4.061e^-4	0.816	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11121667	X_11121667_SNP [dm3] X_11227634_SNP [dm6]	T	C	4.062e^-4	0.816	INTRON CG44422
3R	8388326	3R_8388326_SNP [dm3] 3R_12562604_SNP [dm6]	C	T	4.066e^-4	0.816	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
2R	8137155	2R_8137155_SNP [dm3] 2R_12249650_SNP [dm6]	A	G	4.073e^-4	0.816	INTERGENIC
2R	8137167	2R_8137167_INS [dm3] 2R_12249662_INS [dm6]	C	CCT	4.073e^-4	0.816	INTERGENIC
2R	8137175	2R_8137175_INS [dm3] 2R_12249670_INS [dm6]	C	TCTT	4.073e^-4	0.816	INTERGENIC
X	9621573	X_9621573_SNP [dm3] X_9727540_SNP [dm6]	A	C	4.081e^-4	0.816	DOWNSTREAM CR43498 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22615421	3R_22615421_SNP [dm3] 3R_26789699_SNP [dm6]	T	A	4.091e^-4	0.816	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	7622838	X_7622838_SNP [dm3] X_7728805_SNP [dm6]	C	T	4.092e^-4	0.816	UTR_5_PRIME CG12155 UPSTREAM NELF-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12453917	2R_12453917_SNP [dm3] 2R_16566412_SNP [dm6]	C	T	4.097e^-4	0.816	INTRON CG4945
2R	4944897	2R_4944897_SNP [dm3] 2R_9057392_SNP [dm6]	C	A	4.101e^-4	0.816	INTRON CG13743
3L	22232878	3L_22232878_SNP [dm3] 3L_22239778_SNP [dm6]	C	T	4.104e^-4	0.816	INTRON olf413	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20587712	3R_20587712_SNP [dm3] 3R_24761990_SNP [dm6]	C	A	4.104e^-4	0.816	INTRON AstA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15413680	X_15413680_SNP [dm3] X_15519647_SNP [dm6]	A	G	4.105e^-4	0.816	INTRON Ac13E
3L	12052968	3L_12052968_SNP [dm3] 3L_12059868_SNP [dm6]	T	G	4.115e^-4	0.816	INTRON rols	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	16905534	3L_16905534_SNP [dm3] 3L_16912434_SNP [dm6]	T	A	4.120e^-4	0.816	INTRON Lmpt
3L	4843796	3L_4843796_SNP [dm3] 3L_4843796_SNP [dm6]	G	A	4.120e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	3465305	X_3465305_SNP [dm3] X_3571272_SNP [dm6]	G	A	4.124e^-4	0.816	SYNONYMOUS_CODING ppk8 DOWNSTREAM CG2875 INTRON CG32791
2R	20789054	2R_20789054_SNP [dm3] 2R_24901531_SNP [dm6]	C	T	4.124e^-4	0.816	UPSTREAM Tpc2 INTRON NaCP60E	TF binding site mE1_TFBS_HSA
X	5594395	X_5594395_SNP [dm3] X_5700362_SNP [dm6]	G	T	4.126e^-4	0.816	INTRON CG4096
3L	7721452	3L_7721452_SNP [dm3] 3L_7728352_SNP [dm6]	A	G	4.129e^-4	0.816	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
3L	15483243	3L_15483243_SNP [dm3] 3L_15490143_SNP [dm6]	G	C	4.131e^-4	0.816	INTERGENIC
2R	16864548	2R_16864548_SNP [dm3] 2R_20977043_SNP [dm6]	G	A	4.136e^-4	0.816	UPSTREAM CG9344 DOWNSTREAM CG15650 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	18486561	2L_18486561_SNP [dm3] 2L_18486561_SNP [dm6]	T	G	4.138e^-4	0.816	INTRON CG10176	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16837257	2R_16837257_SNP [dm3] 2R_20949752_SNP [dm6]	C	T	4.148e^-4	0.816	UPSTREAM CG33704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	17684793	3R_17684793_SNP [dm3] 3R_21859071_SNP [dm6]	A	C	4.151e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12077068	3R_12077068_SNP [dm3] 3R_16251346_SNP [dm6]	G	A	4.152e^-4	0.816	INTRON tara	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5141937	2R_5141937_SNP [dm3] 2R_9254432_SNP [dm6]	T	G	4.163e^-4	0.816	INTRON Pkn
2L	11467694	2L_11467694_SNP [dm3] 2L_11467694_SNP [dm6]	C	T	4.166e^-4	0.816	INTERGENIC
2R	8137206	2R_8137206_SNP [dm3] 2R_12249701_SNP [dm6]	T	C	4.170e^-4	0.816	INTERGENIC
2L	19821796	2L_19821796_SNP [dm3] 2L_19821796_SNP [dm6]	C	A	4.182e^-4	0.816	INTRON sick
X	14119792	X_14119792_SNP [dm3] X_14225759_SNP [dm6]	A	T	4.196e^-4	0.816	NON_SYNONYMOUS_CODING CG11674 UPSTREAM mRpL38	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9425162	2L_9425162_SNP [dm3] 2L_9425162_SNP [dm6]	C	T	4.206e^-4	0.816	SYNONYMOUS_CODING Mco1
3R	19200358	3R_19200358_SNP [dm3] 3R_23374636_SNP [dm6]	A	G	4.209e^-4	0.816	DOWNSTREAM CG42828 INTERGENIC
X	5538195	X_5538195_SNP [dm3] X_5644162_SNP [dm6]	A	G	4.210e^-4	0.816	INTRON CG42492
3L	7257564	3L_7257564_SNP [dm3] 3L_7264464_SNP [dm6]	C	T	4.212e^-4	0.816	UPSTREAM CG14830 INTERGENIC
2L	8448559	2L_8448559_SNP [dm3] 2L_8448559_SNP [dm6]	C	T	4.213e^-4	0.816	SYNONYMOUS_CODING U26
3L	14406794	3L_14406794_SNP [dm3] 3L_14413694_SNP [dm6]	C	G	4.226e^-4	0.816	NON_SYNONYMOUS_CODING bbg DOWNSTREAM CG3919
3R	19501621	3R_19501621_SNP [dm3] 3R_23675899_SNP [dm6]	A	T	4.232e^-4	0.816	INTERGENIC
2L	9426788	2L_9426788_SNP [dm3] 2L_9426788_SNP [dm6]	C	T	4.233e^-4	0.816	UTR_5_PRIME Fbp2 UPSTREAM Fbp2 DOWNSTREAM Mco1
2L	19816601	2L_19816601_SNP [dm3] 2L_19816601_SNP [dm6]	G	T	4.271e^-4	0.816	UPSTREAM snRNA:U2:38ABa DOWNSTREAM snRNA:U5:38ABb INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	5075570	X_5075570_SNP [dm3] X_5181537_SNP [dm6]	G	A	4.274e^-4	0.816	INTRON rg & 2 others
3L	18688290	3L_18688290_SNP [dm3] 3L_18695190_SNP [dm6]	C	G	4.283e^-4	0.816	INTRON CG6893
3L	4616042	3L_4616042_SNP [dm3] 3L_4616042_SNP [dm6]	G	C	4.294e^-4	0.816	INTRON Src64B
3L	13272837	3L_13272837_SNP [dm3] 3L_13279737_SNP [dm6]	C	G	4.295e^-4	0.816	UPSTREAM tRNA:CR32123:Psi DOWNSTREAM caps INTERGENIC
3L	3893005	3L_3893005_SNP [dm3] 3L_3893005_SNP [dm6]	C	T	4.301e^-4	0.816	DOWNSTREAM snRNA:U11 INTRON Fie
2L	702204	2L_702204_SNP [dm3] 2L_702204_SNP [dm6]	T	C	4.305e^-4	0.816	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3L	2325817	3L_2325817_SNP [dm3] 3L_2325817_SNP [dm6]	C	A	4.310e^-4	0.816	INTRON MsR1
2R	10821667	2R_10821667_DEL [dm3] 2R_14934162_DEL [dm6]	ATGATACACGCTTATTA...	A	4.313e^-4	0.816	UPSTREAM CG10253 DOWNSTREAM CG12853 INTRON CG10253	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	4950263	3L_4950263_SNP [dm3] 3L_4950263_SNP [dm6]	C	T	4.316e^-4	0.816	INTRON Con	TF binding site mE1_TFBS_chinmo
3L	2647596	3L_2647596_SNP [dm3] 3L_2647596_SNP [dm6]	C	A	4.324e^-4	0.816	UPSTREAM CG1246 DOWNSTREAM CG1143 INTERGENIC
X	11321111	X_11321111_SNP [dm3] X_11427078_SNP [dm6]	C	G	4.332e^-4	0.816	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5986569	3R_5986569_SNP [dm3] 3R_10160847_SNP [dm6]	T	G	4.335e^-4	0.816	SYNONYMOUS_CODING CG6254 DOWNSTREAM Best1
3R	14293768	3R_14293768_SNP [dm3] 3R_18468046_SNP [dm6]	A	G	4.338e^-4	0.816	INTRON fru
X	17503496	X_17503496_SNP [dm3] X_17609463_SNP [dm6]	T	A	4.339e^-4	0.816	INTERGENIC
3L	22919731	3L_22919731_SNP [dm3] 3L_22926631_SNP [dm6]	A	C	4.342e^-4	0.816	INTERGENIC
2R	18008494	2R_18008494_SNP [dm3] 2R_22120989_SNP [dm6]	C	T	4.344e^-4	0.816	INTRON Vrp1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	21802262	2L_21802262_SNP [dm3] 2L_21802262_SNP [dm6]	A	G	4.353e^-4	0.816	INTERGENIC
2R	8132843	2R_8132843_SNP [dm3] 2R_12245338_SNP [dm6]	T	A	4.354e^-4	0.816	UPSTREAM CG43244 INTERGENIC
3R	25752413	3R_25752413_SNP [dm3] 3R_29926691_SNP [dm6]	G	A	4.360e^-4	0.816	UPSTREAM Jon99Ci & 1 other INTERGENIC
X	11320956	X_11320956_SNP [dm3] X_11426923_SNP [dm6]	T	A	4.366e^-4	0.816	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	22269283	X_22269283_SNP [dm3] X_22867447_SNP [dm6]	T	A	4.371e^-4	0.816	INTRON CG42346	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	25758730	3R_25758730_SNP [dm3] 3R_29933008_SNP [dm6]	C	G	4.373e^-4	0.816	SYNONYMOUS_CODING Cog7 UPSTREAM CG42557 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	1862418	2L_1862418_SNP [dm3] 2L_1862418_SNP [dm6]	G	A	4.376e^-4	0.816	INTRON CG31663
X	6425282	X_6425282_SNP [dm3] X_6531249_SNP [dm6]	G	A	4.380e^-4	0.816	SYNONYMOUS_CODING RpL7A DOWNSTREAM snoRNA:Or-CD10 & 1 other	TF binding site BDTNP1_TFBS_sna
X	18464186	X_18464186_SNP [dm3] X_18570153_SNP [dm6]	C	A	4.382e^-4	0.816	INTRON Bx	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
X	9007178	X_9007178_SNP [dm3] X_9113145_SNP [dm6]	T	A	4.385e^-4	0.816	INTRON AP-1gamma
2L	18487635	2L_18487635_SNP [dm3] 2L_18487635_SNP [dm6]	T	G	4.398e^-4	0.816	UTR_3_PRIME CG10176 DOWNSTREAM kon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	10471731	2L_10471731_SNP [dm3] 2L_10471731_SNP [dm6]	C	T	4.406e^-4	0.816	SYNONYMOUS_CODING RluA-1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	606418	2L_606418_SNP [dm3] 2L_606418_SNP [dm6]	T	C	4.413e^-4	0.816	DOWNSTREAM CR43648 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5650243	3L_5650243_SNP [dm3] 3L_5657143_SNP [dm6]	T	C	4.428e^-4	0.816	UTR_3_PRIME lin-28 UPSTREAM sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7481577	3L_7481577_SNP [dm3] 3L_7488477_SNP [dm6]	A	T	4.428e^-4	0.816	DOWNSTREAM mthl6 INTERGENIC
3L	18406670	3L_18406670_SNP [dm3] 3L_18413570_SNP [dm6]	C	A	4.430e^-4	0.816	INTERGENIC
2L	19890116	2L_19890116_SNP [dm3] 2L_19890116_SNP [dm6]	T	A	4.434e^-4	0.816	DOWNSTREAM CG10481 INTRON sick
X	17945999	X_17945999_SNP [dm3] X_18051966_SNP [dm6]	T	C	4.435e^-4	0.816	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18780293	3R_18780293_SNP [dm3] 3R_22954571_SNP [dm6]	G	C	4.437e^-4	0.816	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	1733503	3L_1733503_SNP [dm3] 3L_1733503_SNP [dm6]	G	A	4.442e^-4	0.816	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	21406757	3R_21406757_SNP [dm3] 3R_25581035_SNP [dm6]	A	G	4.454e^-4	0.816	DOWNSTREAM CG4582 INTRON msi
3R	21406758	3R_21406758_SNP [dm3] 3R_25581036_SNP [dm6]	C	A	4.454e^-4	0.816	DOWNSTREAM CG4582 INTRON msi
3L	9661315	3L_9661315_SNP [dm3] 3L_9668215_SNP [dm6]	A	G	4.456e^-4	0.816	INTRON fry	TF binding site mE1_TFBS_cad
3R	24831732	3R_24831732_SNP [dm3] 3R_29006010_SNP [dm6]	G	C	4.457e^-4	0.816	INTRON wat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7191874	2L_7191874_SNP [dm3] 2L_7191874_SNP [dm6]	A	G	4.460e^-4	0.816	NON_SYNONYMOUS_CODING CG4497	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	20479009	3R_20479009_SNP [dm3] 3R_24653287_SNP [dm6]	A	T	4.461e^-4	0.816	UTR_3_PRIME ash2 DOWNSTREAM CG31125	TF binding site mE1_TFBS_chinmo
3R	4349280	3R_4349280_SNP [dm3] 3R_8523558_SNP [dm6]	T	C	4.461e^-4	0.816	UPSTREAM CG31259 DOWNSTREAM CG31454 INTERGENIC
2R	12533695	2R_12533695_SNP [dm3] 2R_16646190_SNP [dm6]	A	C	4.465e^-4	0.816	SYNONYMOUS_CODING gprs UTR_3_PRIME gprs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.412e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	4.6855	0.0961

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2063 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	3680402	3L_3680402_SNP [dm3] 3L_3680402_SNP [dm6]	T	C	5.661e^-7	0.535	INTERGENIC
3R	27128046	3R_27128046_SNP [dm3] 3R_31302324_SNP [dm6]	C	T	5.710e^-7	0.535	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_inv
2R	15697740	2R_15697740_SNP [dm3] 2R_19810235_SNP [dm6]	T	G	2.147e^-6	0.858	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	18464186	X_18464186_SNP [dm3] X_18570153_SNP [dm6]	C	A	3.072e^-6	0.858	INTRON Bx	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
3L	2645081	3L_2645081_SNP [dm3] 3L_2645081_SNP [dm6]	A	G	3.952e^-6	0.858	UPSTREAM CG1143 INTERGENIC
3L	14813948	3L_14813948_SNP [dm3] 3L_14820848_SNP [dm6]	G	A	4.402e^-6	0.858	INTRON CG17839
3L	11276731	3L_11276731_SNP [dm3] 3L_11283631_SNP [dm6]	A	G	5.193e^-6	0.858	INTERGENIC
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	5.310e^-6	0.858	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7202015	2L_7202015_SNP [dm3] 2L_7202015_SNP [dm6]	C	A	5.409e^-6	0.858	INTRON CG4502
3R	13570329	3R_13570329_SNP [dm3] 3R_17744607_SNP [dm6]	A	C	6.656e^-6	0.858	INTRON TyrRII	TF binding site mE1_TFBS_cad
3L	2645067	3L_2645067_SNP [dm3] 3L_2645067_SNP [dm6]	C	T	7.633e^-6	0.858	UPSTREAM CG1143 INTERGENIC
3R	22141543	3R_22141543_SNP [dm3] 3R_26315821_SNP [dm6]	T	A	7.668e^-6	0.858	INTERGENIC
2R	12696827	2R_12696827_SNP [dm3] 2R_16809322_SNP [dm6]	C	A	8.296e^-6	0.858	INTERGENIC
X	18463732	X_18463732_SNP [dm3] X_18569699_SNP [dm6]	A	G	8.369e^-6	0.858	INTRON Bx	TF binding site BDTNP1_TFBS_da
3L	18663595	3L_18663595_SNP [dm3] 3L_18670495_SNP [dm6]	T	C	9.375e^-6	0.858	SYNONYMOUS_CODING Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	7777439	3L_7777439_SNP [dm3] 3L_7784339_SNP [dm6]	C	T	9.508e^-6	0.858	INTRON CG32369
3L	11599845	3L_11599845_SNP [dm3] 3L_11606745_SNP [dm6]	T	C	1.029e^-5	0.858	SYNONYMOUS_CODING CG6091
2L	7202010	2L_7202010_SNP [dm3] 2L_7202010_SNP [dm6]	C	T	1.037e^-5	0.858	INTRON CG4502
2L	7202011	2L_7202011_SNP [dm3] 2L_7202011_SNP [dm6]	G	A	1.086e^-5	0.858	INTRON CG4502
3L	11276715	3L_11276715_SNP [dm3] 3L_11283615_SNP [dm6]	A	C	1.236e^-5	0.858	INTERGENIC
3L	11276725	3L_11276725_SNP [dm3] 3L_11283625_SNP [dm6]	A	T	1.236e^-5	0.858	INTERGENIC
3R	6253276	3R_6253276_SNP [dm3] 3R_10427554_SNP [dm6]	G	A	1.251e^-5	0.858	INTERGENIC
2R	6795339	2R_6795339_SNP [dm3] 2R_10907834_SNP [dm6]	G	T	1.370e^-5	0.858	INTERGENIC
X	14154319	X_14154319_SNP [dm3] X_14260286_SNP [dm6]	G	C	1.415e^-5	0.858	UPSTREAM CG1461 INTERGENIC
2L	3997257	2L_3997257_INS [dm3] 2L_3997257_INS [dm6]	T	TGA	1.424e^-5	0.858	INTERGENIC
2R	16289150	2R_16289150_SNP [dm3] 2R_20401645_SNP [dm6]	G	A	1.426e^-5	0.858	INTERGENIC
3L	2644985	3L_2644985_SNP [dm3] 3L_2644985_SNP [dm6]	T	A	1.565e^-5	0.858	UPSTREAM CG1143 INTERGENIC
3L	7072423	3L_7072423_SNP [dm3] 3L_7079323_SNP [dm6]	C	A	1.580e^-5	0.858	INTERGENIC
X	12850971	X_12850971_SNP [dm3] X_12956938_SNP [dm6]	G	T	1.584e^-5	0.858	INTRON hec
3L	2645044	3L_2645044_SNP [dm3] 3L_2645044_SNP [dm6]	T	G	1.765e^-5	0.858	UPSTREAM CG1143 INTERGENIC
2R	11251263	2R_11251263_SNP [dm3] 2R_15363758_SNP [dm6]	T	A	1.783e^-5	0.858	INTRON unc-5
X	3380974	X_3380974_SNP [dm3] X_3486941_SNP [dm6]	G	A	1.886e^-5	0.858	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3381085	X_3381085_SNP [dm3] X_3487052_SNP [dm6]	G	C	1.886e^-5	0.858	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18542624	2R_18542624_SNP [dm3] 2R_22655119_SNP [dm6]	A	T	1.922e^-5	0.858	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other INTRON CG30196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	16847578	X_16847578_SNP [dm3] X_16953545_SNP [dm6]	T	C	1.947e^-5	0.858	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	742989	3L_742989_SNP [dm3] 3L_742989_SNP [dm6]	C	A	1.963e^-5	0.858	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	2645041	3L_2645041_SNP [dm3] 3L_2645041_SNP [dm6]	G	T	2.175e^-5	0.858	UPSTREAM CG1143 INTERGENIC
2R	19024849	2R_19024849_SNP [dm3] 2R_23137326_SNP [dm6]	T	G	2.209e^-5	0.858	INTERGENIC
2R	11177864	2R_11177864_SNP [dm3] 2R_15290359_SNP [dm6]	A	G	2.228e^-5	0.858	INTRON Trpm
2R	10847556	2R_10847556_SNP [dm3] 2R_14960051_SNP [dm6]	T	G	2.245e^-5	0.858	INTRON aPKC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4556778	3L_4556778_SNP [dm3] 3L_4556778_SNP [dm6]	A	C	2.284e^-5	0.858	UPSTREAM CG42540 INTRON CG42540
2R	12400793	2R_12400793_SNP [dm3] 2R_16513288_SNP [dm6]	C	G	2.312e^-5	0.858	INTRON Sema-2a
2R	6795340	2R_6795340_SNP [dm3] 2R_10907835_SNP [dm6]	A	G	2.318e^-5	0.858	INTERGENIC
3L	4556796	3L_4556796_INS [dm3] 3L_4556796_INS [dm6]	T	TA	2.383e^-5	0.858	UPSTREAM CG42540 INTRON CG42540
3L	11277473	3L_11277473_SNP [dm3] 3L_11284373_SNP [dm6]	G	A	2.418e^-5	0.858	UPSTREAM CR45404 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	2645600	3L_2645600_SNP [dm3] 3L_2645600_SNP [dm6]	A	T	2.420e^-5	0.858	INTRON CG1143	TF binding site mE1_TFBS_cad
3L	8391972	3L_8391972_SNP [dm3] 3L_8398872_SNP [dm6]	A	T	2.447e^-5	0.858	INTRON CG7120
X	3381344	X_3381344_SNP [dm3] X_3487311_SNP [dm6]	T	C	2.515e^-5	0.858	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_sens
3R	4934321	3R_4934321_SNP [dm3] 3R_9108599_SNP [dm6]	G	A	2.739e^-5	0.858	INTRON pum
3R	18909679	3R_18909679_SNP [dm3] 3R_23083957_SNP [dm6]	C	A	2.776e^-5	0.858	INTRON CG13830	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	2.803e^-5	0.858	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	743080	3L_743080_SNP [dm3] 3L_743080_SNP [dm6]	T	A	2.806e^-5	0.858	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	14555445	3L_14555445_SNP [dm3] 3L_14562345_SNP [dm6]	A	T	2.825e^-5	0.858	INTRON CG34039	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
3R	12971257	3R_12971257_SNP [dm3] 3R_17145535_SNP [dm6]	A	C	2.857e^-5	0.858	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3R	12971260	3R_12971260_DEL [dm3] 3R_17145538_DEL [dm6]	AGGTAAGCATCCTA...	G	2.857e^-5	0.858	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
2R	18542315	2R_18542315_SNP [dm3] 2R_22654810_SNP [dm6]	A	T	2.875e^-5	0.858	UTR_3_PRIME CG30196 UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other	TF binding site mE1_TFBS_cad
3L	18662988	3L_18662988_INS [dm3] 3L_18669888_INS [dm6]	G	GCTG	2.897e^-5	0.858	CODON_INSERTION Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	18542589	2R_18542589_SNP [dm3] 2R_22655084_SNP [dm6]	A	G	2.909e^-5	0.858	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other INTRON CG30196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	3380537	X_3380537_SNP [dm3] X_3486504_SNP [dm6]	A	G	2.927e^-5	0.858	NON_SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_sens
X	21160839	X_21160839_SNP [dm3] X_21289812_SNP [dm6]	T	C	2.935e^-5	0.858	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26618196	3R_26618196_SNP [dm3] 3R_30792474_SNP [dm6]	C	T	3.088e^-5	0.858	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
2R	7961237	2R_7961237_SNP [dm3] 2R_12073732_SNP [dm6]	G	A	3.123e^-5	0.858	INTRON CG8888
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	3.156e^-5	0.858	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
2R	18542312	2R_18542312_SNP [dm3] 2R_22654807_SNP [dm6]	C	G	3.158e^-5	0.858	UTR_3_PRIME CG30196 UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other	TF binding site mE1_TFBS_cad
X	17014026	X_17014026_SNP [dm3] X_17119993_SNP [dm6]	C	T	3.209e^-5	0.858	INTRON CG5004
3L	8391974	3L_8391974_SNP [dm3] 3L_8398874_SNP [dm6]	G	A	3.214e^-5	0.858	INTRON CG7120
2L	5544938	2L_5544938_SNP [dm3] 2L_5544938_SNP [dm6]	A	T	3.237e^-5	0.858	SYNONYMOUS_CODING Lam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	7961258	2R_7961258_SNP [dm3] 2R_12073753_SNP [dm6]	A	G	3.267e^-5	0.858	INTRON CG8888
X	21160844	X_21160844_SNP [dm3] X_21289817_SNP [dm6]	G	C	3.289e^-5	0.858	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4342921	3R_4342921_SNP [dm3] 3R_8517199_SNP [dm6]	C	T	3.296e^-5	0.858	UPSTREAM CG11737 INTERGENIC
2R	11907181	2R_11907181_SNP [dm3] 2R_16019676_SNP [dm6]	A	G	3.328e^-5	0.858	INTRON CG8399
X	7623480	X_7623480_SNP [dm3] X_7729447_SNP [dm6]	A	G	3.333e^-5	0.858	INTRON CG12155	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	18464310	X_18464310_SNP [dm3] X_18570277_SNP [dm6]	C	T	3.355e^-5	0.858	INTRON Bx	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
3L	14376180	3L_14376180_SNP [dm3] 3L_14383080_SNP [dm6]	C	T	3.452e^-5	0.858	UTR_3_PRIME CG43120
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	3.458e^-5	0.858	EXON CR44950
3L	16202346	3L_16202346_SNP [dm3] 3L_16209246_SNP [dm6]	C	T	3.525e^-5	0.858	INTERGENIC	TF binding site mE1_TFBS_cad
3R	5137887	3R_5137887_SNP [dm3] 3R_9312165_SNP [dm6]	A	G	3.597e^-5	0.858	INTRON CG8861
3L	2644981	3L_2644981_SNP [dm3] 3L_2644981_SNP [dm6]	A	T	3.648e^-5	0.858	UPSTREAM CG1143 INTERGENIC
3R	5145048	3R_5145048_SNP [dm3] 3R_9319326_SNP [dm6]	G	A	3.719e^-5	0.858	INTRON CG8861
3L	743033	3L_743033_SNP [dm3] 3L_743033_SNP [dm6]	C	T	3.781e^-5	0.858	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	712348	3L_712348_SNP [dm3] 3L_712348_SNP [dm6]	G	T	3.870e^-5	0.858	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	18575735	3L_18575735_SNP [dm3] 3L_18582635_SNP [dm6]	C	A	3.975e^-5	0.858	UPSTREAM CR45435 INTERGENIC
2R	20946369	2R_20946369_SNP [dm3] 2R_25058846_SNP [dm6]	C	T	4.032e^-5	0.858	INTERGENIC	regulatory region FlyBase REDfly_CRMs
2R	10846476	2R_10846476_SNP [dm3] 2R_14958971_SNP [dm6]	T	C	4.082e^-5	0.858	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18542253	2R_18542253_SNP [dm3] 2R_22654748_SNP [dm6]	A	T	4.120e^-5	0.858	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG30196 & 2 others INTERGENIC	TF binding site mE1_TFBS_cad
3L	742992	3L_742992_DEL [dm3] 3L_742992_DEL [dm6]	ATGGTTTTTGATAACTAA...	A	4.122e^-5	0.858	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	11270074	3L_11270074_SNP [dm3] 3L_11276974_SNP [dm6]	A	G	4.244e^-5	0.858	INTERGENIC
3L	743046	3L_743046_SNP [dm3] 3L_743046_SNP [dm6]	A	T	4.287e^-5	0.858	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	26618541	3R_26618541_SNP [dm3] 3R_30792819_SNP [dm6]	A	G	4.306e^-5	0.858	SYNONYMOUS_CODING wts	TF binding site mE1_TFBS_chinmo
3L	743084	3L_743084_INS [dm3] 3L_743084_INS [dm6]	T	TT	4.500e^-5	0.858	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	3090995	3L_3090995_SNP [dm3] 3L_3090995_SNP [dm6]	C	T	4.526e^-5	0.858	UTR_3_PRIME Cht7 DOWNSTREAM CG11486 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	1610355	3L_1610355_SNP [dm3] 3L_1610355_SNP [dm6]	C	A	4.626e^-5	0.858	DOWNSTREAM CG12105 INTRON CG33791 & 1 other
2R	8479010	2R_8479010_SNP [dm3] 2R_12591505_SNP [dm6]	T	C	4.709e^-5	0.858	DOWNSTREAM CR30055 INTRON Sin3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2L	2669602	2L_2669602_SNP [dm3] 2L_2669602_SNP [dm6]	G	T	4.722e^-5	0.858	UPSTREAM Gr23a INTERGENIC
X	2310890	X_2310890_SNP [dm3] X_2416857_SNP [dm6]	C	G	4.735e^-5	0.858	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	9814806	X_9814806_DEL [dm3] X_9920773_DEL [dm6]	TT	T	4.742e^-5	0.858	INTERGENIC
3L	11276624	3L_11276624_SNP [dm3] 3L_11283524_SNP [dm6]	G	A	4.772e^-5	0.858	INTERGENIC
X	7613485	X_7613485_SNP [dm3] X_7719452_SNP [dm6]	G	A	4.896e^-5	0.858	INTERGENIC
2L	7202014	2L_7202014_SNP [dm3] 2L_7202014_SNP [dm6]	C	A	4.947e^-5	0.858	INTRON CG4502
2R	13739800	2R_13739800_SNP [dm3] 2R_17852295_SNP [dm6]	G	T	5.007e^-5	0.858	UPSTREAM CG30323 INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15077567	X_15077567_SNP [dm3] X_15183534_SNP [dm6]	A	G	5.124e^-5	0.858	INTRON CG43737
3L	16983394	3L_16983394_SNP [dm3] 3L_16990294_SNP [dm6]	C	A	5.131e^-5	0.858	INTRON Exn
2R	8479079	2R_8479079_SNP [dm3] 2R_12591574_SNP [dm6]	G	T	5.177e^-5	0.858	DOWNSTREAM CR30055 INTRON Sin3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2R	18542565	2R_18542565_SNP [dm3] 2R_22655060_SNP [dm6]	G	A	5.187e^-5	0.858	SYNONYMOUS_CODING CG30196 UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2645611	3L_2645611_SNP [dm3] 3L_2645611_SNP [dm6]	C	A	5.206e^-5	0.858	INTRON CG1143	TF binding site mE1_TFBS_cad
2L	8619047	2L_8619047_SNP [dm3] 2L_8619047_SNP [dm6]	C	T	5.333e^-5	0.858	UPSTREAM tRNA:CR31602 INTRON Sema-1a
2R	16864005	2R_16864005_SNP [dm3] 2R_20976500_SNP [dm6]	A	T	5.356e^-5	0.858	UPSTREAM CG9344 INTRON CG34115	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	4556835	3L_4556835_SNP [dm3] 3L_4556835_SNP [dm6]	T	C	5.381e^-5	0.858	UPSTREAM CG42540 INTRON CG42540
2L	21921535	2L_21921535_SNP [dm3] 2L_21921535_SNP [dm6]	T	C	5.538e^-5	0.858	INTERGENIC
3L	11276913	3L_11276913_SNP [dm3] 3L_11283813_SNP [dm6]	C	G	5.563e^-5	0.858	UPSTREAM CR45404 INTERGENIC
3L	1103387	3L_1103387_SNP [dm3] 3L_1103387_SNP [dm6]	C	T	5.604e^-5	0.858	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	2645026	3L_2645026_SNP [dm3] 3L_2645026_SNP [dm6]	T	A	5.663e^-5	0.858	UPSTREAM CG1143 INTERGENIC
2R	8479078	2R_8479078_SNP [dm3] 2R_12591573_SNP [dm6]	G	T	5.700e^-5	0.858	DOWNSTREAM CR30055 INTRON Sin3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2R	11278216	2R_11278216_SNP [dm3] 2R_15390711_SNP [dm6]	T	C	5.736e^-5	0.858	INTERGENIC
X	2926031	X_2926031_SNP [dm3] X_3031998_SNP [dm6]	C	A	5.808e^-5	0.858	INTRON kirre
2L	8807137	2L_8807137_SNP [dm3] 2L_8807137_SNP [dm6]	T	C	5.926e^-5	0.858	INTERGENIC
2L	21802210	2L_21802210_SNP [dm3] 2L_21802210_SNP [dm6]	G	A	6.039e^-5	0.858	INTERGENIC
X	12772793	X_12772793_SNP [dm3] X_12878760_SNP [dm6]	T	A	6.040e^-5	0.858	INTRON Pde9
3L	712385	3L_712385_DEL [dm3] 3L_712385_DEL [dm6]	TA	T	6.043e^-5	0.858	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	17460040	3L_17460040_INS [dm3] 3L_17466940_INS [dm6]	T	GG	6.062e^-5	0.858	DOWNSTREAM CG7603 INTERGENIC
3R	13600672	3R_13600672_SNP [dm3] 3R_17774950_SNP [dm6]	C	T	6.067e^-5	0.858	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4534444	3L_4534444_SNP [dm3] 3L_4534444_SNP [dm6]	C	A	6.103e^-5	0.858	INTRON CG11353
3L	743993	3L_743993_SNP [dm3] 3L_743993_SNP [dm6]	T	C	6.113e^-5	0.858	UPSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6253307	3R_6253307_SNP [dm3] 3R_10427585_SNP [dm6]	G	T	6.113e^-5	0.858	INTERGENIC
2R	9147038	2R_9147038_SNP [dm3] 2R_13259533_SNP [dm6]	G	A	6.116e^-5	0.858	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3R	10575129	3R_10575129_SNP [dm3] 3R_14749407_SNP [dm6]	C	G	6.141e^-5	0.858	UPSTREAM jvl & 1 other INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	10196368	3R_10196368_SNP [dm3] 3R_14370646_SNP [dm6]	T	A	6.152e^-5	0.858	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	18542610	2R_18542610_DEL [dm3] 2R_22655105_DEL [dm6]	GTATTGGGGCTC...	G	6.168e^-5	0.858	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other INTRON CG30196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11530467	2R_11530467_SNP [dm3] 2R_15642962_SNP [dm6]	T	A	6.285e^-5	0.858	INTRON CG42524
3L	1167757	3L_1167757_SNP [dm3] 3L_1167757_SNP [dm6]	C	T	6.300e^-5	0.858	INTRON bab2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	743058	3L_743058_SNP [dm3] 3L_743058_SNP [dm6]	T	A	6.361e^-5	0.858	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	16983298	3L_16983298_INS [dm3] 3L_16990198_INS [dm6]	A	AG	6.373e^-5	0.858	INTRON Exn
3L	17624822	3L_17624822_SNP [dm3] 3L_17631722_SNP [dm6]	G	C	6.394e^-5	0.858	DOWNSTREAM CG7510 EXON CR44566
2R	10998493	2R_10998493_SNP [dm3] 2R_15110988_SNP [dm6]	A	G	6.398e^-5	0.858	INTERGENIC
3L	391184	3L_391184_SNP [dm3] 3L_391184_SNP [dm6]	C	A	6.404e^-5	0.858	DOWNSTREAM CR45378 INTRON trh
2L	4318113	2L_4318113_SNP [dm3] 2L_4318113_SNP [dm6]	T	C	6.417e^-5	0.858	INTRON tutl	TF binding site mE1_TFBS_HSA
2L	20860404	2L_20860404_SNP [dm3] 2L_20860404_SNP [dm6]	C	T	6.424e^-5	0.858	INTRON CG9336
3L	14560642	3L_14560642_SNP [dm3] 3L_14567542_SNP [dm6]	C	A	6.449e^-5	0.858	INTRON CG42758
2L	10785598	2L_10785598_SNP [dm3] 2L_10785598_SNP [dm6]	A	T	6.552e^-5	0.858	INTRON CG31869 EXON CR44582
2R	9806476	2R_9806476_SNP [dm3] 2R_13918971_SNP [dm6]	G	T	6.557e^-5	0.858	INTRON shot	TF binding site mE1_TFBS_Trl
3L	712376	3L_712376_SNP [dm3] 3L_712376_SNP [dm6]	G	A	6.675e^-5	0.858	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	22141451	3R_22141451_SNP [dm3] 3R_26315729_SNP [dm6]	C	T	6.721e^-5	0.858	INTERGENIC
2R	16265606	2R_16265606_SNP [dm3] 2R_20378101_SNP [dm6]	C	A	6.731e^-5	0.858	INTERGENIC
2R	14978893	2R_14978893_SNP [dm3] 2R_19091388_SNP [dm6]	C	T	6.788e^-5	0.858	SYNONYMOUS_CODING 5-HT1A
2R	12400940	2R_12400940_SNP [dm3] 2R_16513435_SNP [dm6]	T	C	6.800e^-5	0.858	INTRON Sema-2a
2L	6389905	2L_6389905_SNP [dm3] 2L_6389905_SNP [dm6]	C	T	6.831e^-5	0.858	INTRON CG42368	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11724908	2R_11724908_SNP [dm3] 2R_15837403_SNP [dm6]	C	T	6.855e^-5	0.858	INTRON tun	regulatory region REDfly_CRMs
2L	4596035	2L_4596035_SNP [dm3] 2L_4596035_SNP [dm6]	T	A	6.920e^-5	0.858	UPSTREAM dp INTRON dp	TF binding site mE1_TFBS_HSA
2R	10998512	2R_10998512_SNP [dm3] 2R_15111007_SNP [dm6]	G	T	6.922e^-5	0.858	INTERGENIC
2L	7201933	2L_7201933_SNP [dm3] 2L_7201933_SNP [dm6]	T	A	6.929e^-5	0.858	INTRON CG4502
2R	13950559	2R_13950559_SNP [dm3] 2R_18063054_SNP [dm6]	A	T	6.946e^-5	0.858	INTRON CG34386
3L	2683655	3L_2683655_SNP [dm3] 3L_2683655_SNP [dm6]	A	G	6.980e^-5	0.858	INTRON Fife
2L	4147037	2L_4147037_SNP [dm3] 2L_4147037_SNP [dm6]	A	T	7.012e^-5	0.858	INTERGENIC
2R	9147422	2R_9147422_SNP [dm3] 2R_13259917_SNP [dm6]	A	T	7.071e^-5	0.858	UPSTREAM CG42319 INTERGENIC
3L	11276895	3L_11276895_SNP [dm3] 3L_11283795_SNP [dm6]	A	T	7.090e^-5	0.858	UPSTREAM CR45404 INTERGENIC
3R	20396321	3R_20396321_SNP [dm3] 3R_24570599_SNP [dm6]	T	A	7.272e^-5	0.862	INTRON CG13624
2R	12696341	2R_12696341_SNP [dm3] 2R_16808836_SNP [dm6]	C	T	7.274e^-5	0.862	INTERGENIC
X	16876913	X_16876913_SNP [dm3] X_16982880_SNP [dm6]	T	G	7.322e^-5	0.862	INTRON CG45002
X	14154318	X_14154318_SNP [dm3] X_14260285_SNP [dm6]	T	G	7.387e^-5	0.862	UPSTREAM CG1461 INTERGENIC
3R	10410917	3R_10410917_SNP [dm3] 3R_14585195_SNP [dm6]	A	T	7.398e^-5	0.862	INTRON stumps	TF binding site BDTNP1_TFBS_prd
2R	10544277	2R_10544277_SNP [dm3] 2R_14656772_SNP [dm6]	C	T	7.485e^-5	0.862	DOWNSTREAM Adgf-E INTERGENIC
2L	8697403	2L_8697403_SNP [dm3] 2L_8697403_SNP [dm6]	T	G	7.491e^-5	0.862	INTRON Hnf4
2R	10998491	2R_10998491_SNP [dm3] 2R_15110986_SNP [dm6]	A	G	7.498e^-5	0.862	INTERGENIC
X	3110950	X_3110950_SNP [dm3] X_3216917_SNP [dm6]	A	C	7.546e^-5	0.863	INTRON dnc
2L	2922161	2L_2922161_SNP [dm3] 2L_2922161_SNP [dm6]	T	A	7.707e^-5	0.869	INTRON lilli
2R	9147009	2R_9147009_SNP [dm3] 2R_13259504_SNP [dm6]	T	G	7.770e^-5	0.869	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3R	9959340	3R_9959340_SNP [dm3] 3R_14133618_SNP [dm6]	C	T	7.812e^-5	0.869	INTERGENIC
3L	17460045	3L_17460045_SNP [dm3] 3L_17466945_SNP [dm6]	C	T	7.824e^-5	0.869	DOWNSTREAM CG7603 INTERGENIC
2R	10998501	2R_10998501_SNP [dm3] 2R_15110996_SNP [dm6]	T	G	7.835e^-5	0.869	INTERGENIC
2R	14932148	2R_14932148_DEL [dm3] 2R_19044643_DEL [dm6]	AA	A	7.914e^-5	0.869	INTERGENIC
X	14842540	X_14842540_SNP [dm3] X_14948507_SNP [dm6]	T	C	7.986e^-5	0.869	INTRON pdgy	TF binding site mE1_TFBS_HSA
2R	9147010	2R_9147010_SNP [dm3] 2R_13259505_SNP [dm6]	T	G	8.014e^-5	0.869	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3L	4556656	3L_4556656_SNP [dm3] 3L_4556656_SNP [dm6]	C	G	8.068e^-5	0.869	UPSTREAM CG42540 INTRON CG42540
3L	11276693	3L_11276693_SNP [dm3] 3L_11283593_SNP [dm6]	A	G	8.102e^-5	0.869	INTERGENIC
2R	16864219	2R_16864219_SNP [dm3] 2R_20976714_SNP [dm6]	G	A	8.110e^-5	0.869	UPSTREAM CG9344 DOWNSTREAM CG15650 INTRON CG34115	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	8222268	X_8222268_SNP [dm3] X_8328235_SNP [dm6]	A	T	8.314e^-5	0.881	INTRON nAChRalpha3
3L	1103352	3L_1103352_INS [dm3] 3L_1103352_INS [dm6]	T	TGTAT	8.350e^-5	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	6798005	2R_6798005_SNP [dm3] 2R_10910500_SNP [dm6]	C	T	8.360e^-5	0.881	DOWNSTREAM Obp47a INTERGENIC
3L	712399	3L_712399_SNP [dm3] 3L_712399_SNP [dm6]	A	T	8.528e^-5	0.883	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	22297776	2L_22297776_SNP [dm3] 2L_22297776_SNP [dm6]	G	A	8.690e^-5	0.883	INTERGENIC	transposable element FlyBase
3R	26700759	3R_26700759_SNP [dm3] 3R_30875037_SNP [dm6]	G	C	8.694e^-5	0.883	SYNONYMOUS_CODING CG15546	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6606992	2R_6606992_SNP [dm3] 2R_10719487_SNP [dm6]	A	T	8.752e^-5	0.883	INTRON stan
3L	16202334	3L_16202334_SNP [dm3] 3L_16209234_SNP [dm6]	A	T	8.862e^-5	0.883	INTERGENIC	TF binding site mE1_TFBS_cad
3L	13310290	3L_13310290_SNP [dm3] 3L_13317190_SNP [dm6]	T	G	9.035e^-5	0.883	INTERGENIC
2R	9147034	2R_9147034_SNP [dm3] 2R_13259529_SNP [dm6]	G	T	9.045e^-5	0.883	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2R	9147155	2R_9147155_SNP [dm3] 2R_13259650_SNP [dm6]	A	T	9.096e^-5	0.883	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3L	5886015	3L_5886015_SNP [dm3] 3L_5892915_SNP [dm6]	C	G	9.112e^-5	0.883	INTERGENIC
3R	26628563	3R_26628563_SNP [dm3] 3R_30802841_SNP [dm6]	G	C	9.206e^-5	0.883	INTRON wts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
3L	16202369	3L_16202369_SNP [dm3] 3L_16209269_SNP [dm6]	G	A	9.279e^-5	0.883	INTERGENIC	TF binding site mE1_TFBS_cad
2R	11340150	2R_11340150_SNP [dm3] 2R_15452645_SNP [dm6]	A	T	9.328e^-5	0.883	INTRON CG43729
X	9621573	X_9621573_SNP [dm3] X_9727540_SNP [dm6]	A	C	9.408e^-5	0.883	DOWNSTREAM CR43498 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	712384	3L_712384_SNP [dm3] 3L_712384_SNP [dm6]	T	C	9.459e^-5	0.883	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	4556798	3L_4556798_SNP [dm3] 3L_4556798_SNP [dm6]	C	A	9.476e^-5	0.883	UPSTREAM CG42540 INTRON CG42540
3R	18739168	3R_18739168_SNP [dm3] 3R_22913446_SNP [dm6]	A	T	9.495e^-5	0.883	INTRON klg
3R	5121979	3R_5121979_SNP [dm3] 3R_9296257_SNP [dm6]	T	G	9.520e^-5	0.883	INTRON CG8861
3L	3910709	3L_3910709_SNP [dm3] 3L_3910709_SNP [dm6]	G	T	9.574e^-5	0.883	UTR_3_PRIME Eip63F-1 UPSTREAM mge DOWNSTREAM Eip63F-1
2R	13415564	2R_13415564_SNP [dm3] 2R_17528059_SNP [dm6]	G	A	9.753e^-5	0.883	SYNONYMOUS_CODING Patronin
X	4091094	X_4091094_DEL [dm3] X_4197061_DEL [dm6]	AAA	A	9.787e^-5	0.883	INTRON Fas2
2R	11278234	2R_11278234_SNP [dm3] 2R_15390729_SNP [dm6]	C	G	9.795e^-5	0.883	INTERGENIC
2R	11327929	2R_11327929_SNP [dm3] 2R_15440424_SNP [dm6]	G	T	9.858e^-5	0.883	INTRON CG43729
2L	1867630	2L_1867630_SNP [dm3] 2L_1867630_SNP [dm6]	T	A	9.860e^-5	0.883	INTRON CG31663
3R	22615421	3R_22615421_SNP [dm3] 3R_26789699_SNP [dm6]	T	A	9.901e^-5	0.883	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	17861790	2L_17861790_DEL [dm3] 2L_17861790_DEL [dm6]	AA	A	9.996e^-5	0.883	INTRON CadN2
3L	9491503	3L_9491503_SNP [dm3] 3L_9498403_SNP [dm6]	T	C	1.001e^-4	0.883	INTRON path
X	21171393	X_21171393_SNP [dm3] X_21300366_SNP [dm6]	G	C	1.002e^-4	0.883	UTR_5_PRIME CG1718
3L	18663271	3L_18663271_SNP [dm3] 3L_18670171_SNP [dm6]	T	C	1.011e^-4	0.883	SYNONYMOUS_CODING Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	14646889	2R_14646889_SNP [dm3] 2R_18759384_SNP [dm6]	C	T	1.017e^-4	0.883	SPLICE_SITE_REGION Jabba INTRON Jabba
2L	15281202	2L_15281202_DEL [dm3] 2L_15281202_DEL [dm6]	CC	T	1.021e^-4	0.883	DOWNSTREAM CR45349 INTERGENIC
3L	6100247	3L_6100247_SNP [dm3] 3L_6107147_SNP [dm6]	C	T	1.023e^-4	0.883	INTRON Ets65A	TF binding site mE1_TFBS_cad
3L	10279902	3L_10279902_SNP [dm3] 3L_10286802_SNP [dm6]	A	G	1.027e^-4	0.883	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	14816170	3L_14816170_SNP [dm3] 3L_14823070_SNP [dm6]	A	T	1.027e^-4	0.883	INTRON CG17839
3L	4817350	3L_4817350_SNP [dm3] 3L_4817350_SNP [dm6]	G	A	1.031e^-4	0.883	SYNONYMOUS_CODING Dhc64C
3L	16202321	3L_16202321_SNP [dm3] 3L_16209221_SNP [dm6]	G	T	1.041e^-4	0.883	INTERGENIC	TF binding site mE1_TFBS_cad
2L	2279895	2L_2279895_SNP [dm3] 2L_2279895_SNP [dm6]	G	A	1.046e^-4	0.883	UPSTREAM CR43753 INTERGENIC
3R	5129759	3R_5129759_SNP [dm3] 3R_9304037_SNP [dm6]	C	A	1.049e^-4	0.883	INTRON CG8861
3L	5152409	3L_5152409_DEL [dm3] 3L_5159309_DEL [dm6]	GTG	G	1.051e^-4	0.883	UTR_3_PRIME shep
3L	2646789	3L_2646789_SNP [dm3] 3L_2646789_SNP [dm6]	T	G	1.051e^-4	0.883	UTR_3_PRIME CG1143 DOWNSTREAM CG1143
2R	19317545	2R_19317545_SNP [dm3] 2R_23430022_SNP [dm6]	G	T	1.065e^-4	0.883	INTRON CG9815
X	16163210	X_16163210_SNP [dm3] X_16269177_SNP [dm6]	G	A	1.066e^-4	0.883	SYNONYMOUS_CODING kat80
3R	13948880	3R_13948880_SNP [dm3] 3R_18123158_SNP [dm6]	T	C	1.078e^-4	0.883	INTRON sr	TF binding site mE1_TFBS_inv
3R	25799122	3R_25799122_SNP [dm3] 3R_29973400_SNP [dm6]	G	C	1.096e^-4	0.883	INTERGENIC
X	7897466	X_7897466_SNP [dm3] X_8003433_SNP [dm6]	T	C	1.099e^-4	0.883	INTRON Tbh
2L	3437649	2L_3437649_SNP [dm3] 2L_3437649_SNP [dm6]	A	T	1.107e^-4	0.883	INTERGENIC
X	21183165	X_21183165_SNP [dm3] X_21312138_SNP [dm6]	T	A	1.112e^-4	0.883	SYNONYMOUS_CODING CG1801
X	10868903	X_10868903_SNP [dm3] X_10974870_SNP [dm6]	A	G	1.128e^-4	0.883	INTRON CG42339
2R	9147482	2R_9147482_SNP [dm3] 2R_13259977_SNP [dm6]	A	G	1.129e^-4	0.883	UPSTREAM CG42319 INTERGENIC
X	7623661	X_7623661_SNP [dm3] X_7729628_SNP [dm6]	G	T	1.133e^-4	0.883	INTRON CG12155	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	6105410	3R_6105410_SNP [dm3] 3R_10279688_SNP [dm6]	C	G	1.142e^-4	0.883	INTRON CG43143
2R	7408586	2R_7408586_SNP [dm3] 2R_11521081_SNP [dm6]	C	T	1.148e^-4	0.883	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	2926734	X_2926734_SNP [dm3] X_3032701_SNP [dm6]	C	A	1.156e^-4	0.883	INTRON kirre
X	9007178	X_9007178_SNP [dm3] X_9113145_SNP [dm6]	T	A	1.158e^-4	0.883	INTRON AP-1gamma
3R	10811112	3R_10811112_SNP [dm3] 3R_14985390_SNP [dm6]	T	C	1.172e^-4	0.883	INTERGENIC
3R	13600041	3R_13600041_SNP [dm3] 3R_17774319_SNP [dm6]	C	T	1.177e^-4	0.883	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3L	712388	3L_712388_DEL [dm3] 3L_712388_DEL [dm6]	AAT	A	1.184e^-4	0.883	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	19871581	X_19871581_SNP [dm3] X_19977548_SNP [dm6]	T	G	1.184e^-4	0.883	INTERGENIC
X	6898563	X_6898563_SNP [dm3] X_7004530_SNP [dm6]	T	C	1.195e^-4	0.883	DOWNSTREAM Inx2 INTRON Inx7
2L	7365708	2L_7365708_SNP [dm3] 2L_7365708_SNP [dm6]	C	T	1.201e^-4	0.883	INTRON Wnt10
3L	10756244	3L_10756244_SNP [dm3] 3L_10763144_SNP [dm6]	A	G	1.221e^-4	0.883	INTERGENIC
2L	12325115	2L_12325115_SNP [dm3] 2L_12325115_SNP [dm6]	T	C	1.232e^-4	0.883	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6100199	3L_6100199_SNP [dm3] 3L_6107099_SNP [dm6]	C	T	1.235e^-4	0.883	INTRON Ets65A	TF binding site mE1_TFBS_cad
3R	6105638	3R_6105638_DEL [dm3] 3R_10279916_DEL [dm6]	ATGACTCCA	A	1.235e^-4	0.883	INTRON CG43143
2R	3072957	2R_3072957_SNP [dm3] 2R_7185452_SNP [dm6]	C	T	1.246e^-4	0.883	DOWNSTREAM CG30384 INTRON pk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4950454	2R_4950454_SNP [dm3] 2R_9062949_SNP [dm6]	G	A	1.251e^-4	0.883	INTRON ana	regulatory region REDfly_CRMs
2R	18542217	2R_18542217_SNP [dm3] 2R_22654712_SNP [dm6]	T	G	1.258e^-4	0.883	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG30196 & 2 others INTERGENIC	TF binding site mE1_TFBS_cad
X	6952669	X_6952669_DEL [dm3] X_7058636_DEL [dm6]	TGACCTATGGGCATACA...	T	1.260e^-4	0.883	INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	4841343	3L_4841343_SNP [dm3] 3L_4841343_SNP [dm6]	A	C	1.261e^-4	0.883	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	3680449	3L_3680449_SNP [dm3] 3L_3680449_SNP [dm6]	G	A	1.261e^-4	0.883	INTERGENIC	TF binding site mE1_TFBS_cad
X	4091100	X_4091100_SNP [dm3] X_4197067_SNP [dm6]	G	C	1.276e^-4	0.883	INTRON Fas2
2R	19719423	2R_19719423_SNP [dm3] 2R_23831900_SNP [dm6]	A	G	1.287e^-4	0.883	INTRON CG5549
3R	9881211	3R_9881211_SNP [dm3] 3R_14055489_SNP [dm6]	A	C	1.290e^-4	0.883	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9147218	2R_9147218_SNP [dm3] 2R_13259713_SNP [dm6]	T	A	1.297e^-4	0.883	UPSTREAM CG42319 INTERGENIC
3L	7611943	3L_7611943_SNP [dm3] 3L_7618843_SNP [dm6]	G	A	1.306e^-4	0.883	INTRON CG33275
3R	21876370	3R_21876370_SNP [dm3] 3R_26050648_SNP [dm6]	T	G	1.310e^-4	0.883	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7327665	2R_7327665_SNP [dm3] 2R_11440160_SNP [dm6]	C	G	1.310e^-4	0.883	INTRON CG7777
3R	18478641	3R_18478641_SNP [dm3] 3R_22652919_SNP [dm6]	G	T	1.311e^-4	0.883	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10951763	3L_10951763_SNP [dm3] 3L_10958663_SNP [dm6]	G	C	1.314e^-4	0.883	UPSTREAM CR45248 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5925781	2L_5925781_SNP [dm3] 2L_5925781_SNP [dm6]	C	A	1.315e^-4	0.883	UPSTREAM dsf EXON CR43926	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12456090	2R_12456090_SNP [dm3] 2R_16568585_SNP [dm6]	G	A	1.319e^-4	0.883	SYNONYMOUS_CODING CG4945	TF binding site mE1_TFBS_cad
3L	9177943	3L_9177943_SNP [dm3] 3L_9184843_SNP [dm6]	A	C	1.323e^-4	0.883	INTERGENIC
3R	5709131	3R_5709131_SNP [dm3] 3R_9883409_SNP [dm6]	C	G	1.327e^-4	0.883	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5970480	2R_5970480_SNP [dm3] 2R_10082975_SNP [dm6]	C	T	1.327e^-4	0.883	SPLICE_SITE_REGION egr INTRON egr
3R	18739202	3R_18739202_SNP [dm3] 3R_22913480_SNP [dm6]	A	T	1.344e^-4	0.883	INTRON klg
3L	4556696	3L_4556696_SNP [dm3] 3L_4556696_SNP [dm6]	T	A	1.345e^-4	0.883	UPSTREAM CG42540 INTRON CG42540
X	2690048	X_2690048_SNP [dm3] X_2796015_SNP [dm6]	A	C	1.348e^-4	0.883	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	7157527	2R_7157527_SNP [dm3] 2R_11270022_SNP [dm6]	A	G	1.352e^-4	0.883	SYNONYMOUS_CODING Cpr47Ef	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19127148	2R_19127148_SNP [dm3] 2R_23239625_SNP [dm6]	T	G	1.355e^-4	0.883	INTERGENIC
3R	18758721	3R_18758721_SNP [dm3] 3R_22932999_SNP [dm6]	G	A	1.360e^-4	0.883	INTRON klg
2L	12923423	2L_12923423_SNP [dm3] 2L_12923423_SNP [dm6]	T	G	1.367e^-4	0.883	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
3R	19769710	3R_19769710_SNP [dm3] 3R_23943988_SNP [dm6]	G	A	1.371e^-4	0.883	SYNONYMOUS_CODING CG12268 UPSTREAM Gdh	TF binding site mE1_TFBS_cad
3L	712423	3L_712423_SNP [dm3] 3L_712423_SNP [dm6]	G	C	1.371e^-4	0.883	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	25759599	3R_25759599_SNP [dm3] 3R_29933877_SNP [dm6]	C	T	1.371e^-4	0.883	NON_SYNONYMOUS_CODING CG42557 START_GAINED CG42558 UTR_5_PRIME CG42558 UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	741724	3L_741724_INS [dm3] 3L_741724_INS [dm6]	C	CGC	1.374e^-4	0.883	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	14842374	X_14842374_INS [dm3] X_14948341_INS [dm6]	A	ACATAGTCCATAAGGTA...	1.375e^-4	0.883	INTRON pdgy	TF binding site mE1_TFBS_HSA
2L	6508912	2L_6508912_SNP [dm3] 2L_6508912_SNP [dm6]	T	A	1.376e^-4	0.883	UPSTREAM CR44775 INTRON CG31637	TF binding site BDTNP1_TFBS_hb
3L	1042784	3L_1042784_SNP [dm3] 3L_1042784_SNP [dm6]	G	A	1.389e^-4	0.883	INTRON bab1
2L	21055222	2L_21055222_SNP [dm3] 2L_21055222_SNP [dm6]	A	T	1.402e^-4	0.883	NON_SYNONYMOUS_CODING Itgbetanu	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	743013	3L_743013_SNP [dm3] 3L_743013_SNP [dm6]	G	A	1.404e^-4	0.883	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	4930748	2L_4930748_SNP [dm3] 2L_4930748_SNP [dm6]	T	A	1.408e^-4	0.883	INTRON hoe1
3L	4737896	3L_4737896_SNP [dm3] 3L_4737896_SNP [dm6]	G	A	1.411e^-4	0.883	INTRON RhoGEF64C
3R	27100391	3R_27100391_DEL [dm3] 3R_31274669_DEL [dm6]	AA	A	1.418e^-4	0.883	INTERGENIC
3R	22946973	3R_22946973_SNP [dm3] 3R_27121251_SNP [dm6]	C	G	1.420e^-4	0.883	SYNONYMOUS_CODING CG5882 DOWNSTREAM CG6059	TF binding site mE1_TFBS_cad
3R	24806077	3R_24806077_SNP [dm3] 3R_28980355_SNP [dm6]	C	T	1.424e^-4	0.883	INTERGENIC
3L	15213703	3L_15213703_SNP [dm3] 3L_15220603_SNP [dm6]	C	T	1.425e^-4	0.883	INTERGENIC
3L	7726328	3L_7726328_SNP [dm3] 3L_7733228_SNP [dm6]	T	C	1.429e^-4	0.883	DOWNSTREAM Snmp2 INTRON CG32373
X	19115295	X_19115295_SNP [dm3] X_19221262_SNP [dm6]	C	A	1.434e^-4	0.883	INTRON CG7884	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
2R	14086288	2R_14086288_SNP [dm3] 2R_18198783_SNP [dm6]	A	C	1.434e^-4	0.883	INTERGENIC
X	14442539	X_14442539_SNP [dm3] X_14548506_SNP [dm6]	C	T	1.435e^-4	0.883	INTERGENIC
X	6451166	X_6451166_SNP [dm3] X_6557133_SNP [dm6]	C	T	1.445e^-4	0.883	SYNONYMOUS_CODING CG34417 INTRON CG34417
2R	13415561	2R_13415561_SNP [dm3] 2R_17528056_SNP [dm6]	A	G	1.458e^-4	0.883	SYNONYMOUS_CODING Patronin
2R	4956241	2R_4956241_SNP [dm3] 2R_9068736_SNP [dm6]	T	G	1.460e^-4	0.883	UPSTREAM ana INTRON ana
X	19019176	X_19019176_SNP [dm3] X_19125143_SNP [dm6]	C	A	1.468e^-4	0.883	UTR_3_PRIME tgy UPSTREAM CG15882 DOWNSTREAM tgy
3L	14835265	3L_14835265_SNP [dm3] 3L_14842165_SNP [dm6]	T	C	1.478e^-4	0.883	INTRON CG17839
3R	16709916	3R_16709916_SNP [dm3] 3R_20884194_SNP [dm6]	A	T	1.479e^-4	0.883	INTERGENIC	TF binding site mE1_TFBS_cad
3L	7156753	3L_7156753_SNP [dm3] 3L_7163653_SNP [dm6]	G	A	1.480e^-4	0.883	INTRON Dscam2
3L	7156769	3L_7156769_SNP [dm3] 3L_7163669_SNP [dm6]	G	A	1.480e^-4	0.883	INTRON Dscam2
2R	10837352	2R_10837352_SNP [dm3] 2R_14949847_SNP [dm6]	A	G	1.482e^-4	0.883	UPSTREAM aPKC INTRON aPKC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	21405169	3R_21405169_SNP [dm3] 3R_25579447_SNP [dm6]	C	T	1.493e^-4	0.883	INTRON msi
X	14121085	X_14121085_SNP [dm3] X_14227052_SNP [dm6]	C	A	1.520e^-4	0.883	SYNONYMOUS_CODING mRpL38	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11791042	3L_11791042_SNP [dm3] 3L_11797942_SNP [dm6]	A	G	1.524e^-4	0.883	SYNONYMOUS_CODING Klp68D	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9430498	2L_9430498_SNP [dm3] 2L_9430498_SNP [dm6]	T	A	1.525e^-4	0.883	UPSTREAM FucTB & 1 other INTRON FucTB
3R	4313161	3R_4313161_SNP [dm3] 3R_8487439_SNP [dm6]	G	A	1.526e^-4	0.883	INTERGENIC
3R	6105689	3R_6105689_SNP [dm3] 3R_10279967_SNP [dm6]	G	A	1.531e^-4	0.883	INTRON CG43143
3L	20945746	3L_20945746_SNP [dm3] 3L_20952646_SNP [dm6]	G	A	1.533e^-4	0.883	INTERGENIC
2L	4930475	2L_4930475_SNP [dm3] 2L_4930475_SNP [dm6]	A	G	1.535e^-4	0.883	INTRON hoe1
3L	1570824	3L_1570824_SNP [dm3] 3L_1570824_SNP [dm6]	T	C	1.551e^-4	0.883	INTRON CG12004	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	12568589	3L_12568589_SNP [dm3] 3L_12575489_SNP [dm6]	G	T	1.555e^-4	0.883	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	6898468	X_6898468_SNP [dm3] X_7004435_SNP [dm6]	C	T	1.558e^-4	0.883	DOWNSTREAM Inx2 INTRON Inx7
3L	5650243	3L_5650243_SNP [dm3] 3L_5657143_SNP [dm6]	T	C	1.559e^-4	0.883	UTR_3_PRIME lin-28 UPSTREAM sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	4308047	3R_4308047_SNP [dm3] 3R_8482325_SNP [dm6]	G	T	1.563e^-4	0.883	INTERGENIC
2R	3188996	2R_3188996_SNP [dm3] 2R_7301491_SNP [dm6]	T	A	1.565e^-4	0.883	DOWNSTREAM pwn INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19719350	2R_19719350_SNP [dm3] 2R_23831827_SNP [dm6]	T	G	1.566e^-4	0.883	INTRON CG5549
3L	8908321	3L_8908321_SNP [dm3] 3L_8915221_SNP [dm6]	C	T	1.572e^-4	0.883	UPSTREAM CR43970 INTRON Tsp66E
2L	1675714	2L_1675714_SNP [dm3] 2L_1675714_SNP [dm6]	T	A	1.576e^-4	0.883	INTRON chinmo
2L	1675720	2L_1675720_SNP [dm3] 2L_1675720_SNP [dm6]	C	G	1.576e^-4	0.883	INTRON chinmo
3R	10840151	3R_10840151_SNP [dm3] 3R_15014429_SNP [dm6]	T	A	1.584e^-4	0.883	UPSTREAM CG14861 INTERGENIC
3L	17456726	3L_17456726_SNP [dm3] 3L_17463626_SNP [dm6]	A	G	1.585e^-4	0.883	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	15292459	3R_15292459_SNP [dm3] 3R_19466737_SNP [dm6]	A	C	1.586e^-4	0.883	INTRON Dys
3L	17323053	3L_17323053_SNP [dm3] 3L_17329953_SNP [dm6]	A	T	1.591e^-4	0.883	UPSTREAM Or74a INTERGENIC
2L	7922249	2L_7922249_SNP [dm3] 2L_7922249_SNP [dm6]	G	A	1.591e^-4	0.883	INTRON Snoo
2R	9147435	2R_9147435_SNP [dm3] 2R_13259930_SNP [dm6]	T	A	1.614e^-4	0.883	UPSTREAM CG42319 INTERGENIC
3L	19496781	3L_19496781_SNP [dm3] 3L_19503681_SNP [dm6]	G	A	1.621e^-4	0.883	START_GAINED CG9452 UTR_5_PRIME CG9452
3L	7080571	3L_7080571_SNP [dm3] 3L_7087471_SNP [dm6]	C	A	1.623e^-4	0.883	UPSTREAM Cpr65Ea DOWNSTREAM Cpr65Eb INTERGENIC	TF binding site mE1_TFBS_inv
2R	3178769	2R_3178769_SNP [dm3] 2R_7291264_SNP [dm6]	G	A	1.623e^-4	0.883	INTRON pwn	TF binding site mE1_TFBS_cad
3L	4737895	3L_4737895_SNP [dm3] 3L_4737895_SNP [dm6]	A	G	1.628e^-4	0.883	INTRON RhoGEF64C
X	6451181	X_6451181_SNP [dm3] X_6557148_SNP [dm6]	A	G	1.629e^-4	0.883	SYNONYMOUS_CODING CG34417 INTRON CG34417
2R	16864986	2R_16864986_SNP [dm3] 2R_20977481_SNP [dm6]	A	G	1.633e^-4	0.883	UTR_3_PRIME CG9344 DOWNSTREAM CG15650 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	15090507	2L_15090507_SNP [dm3] 2L_15090507_SNP [dm6]	T	C	1.637e^-4	0.883	INTRON CG15270
3L	6904128	3L_6904128_SNP [dm3] 3L_6911028_SNP [dm6]	A	G	1.640e^-4	0.883	DOWNSTREAM Prat2 INTERGENIC
2L	4624701	2L_4624701_SNP [dm3] 2L_4624701_SNP [dm6]	C	T	1.644e^-4	0.883	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13557062	2R_13557062_SNP [dm3] 2R_17669557_SNP [dm6]	T	G	1.657e^-4	0.883	SYNONYMOUS_CODING CG30108 UPSTREAM CG30109 DOWNSTREAM eIF3-S8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
3L	5650459	3L_5650459_SNP [dm3] 3L_5657359_SNP [dm6]	C	G	1.657e^-4	0.883	UTR_3_PRIME lin-28 UPSTREAM sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	11872555	2R_11872555_SNP [dm3] 2R_15985050_SNP [dm6]	T	C	1.661e^-4	0.883	SYNONYMOUS_CODING Strn-Mlck
X	3110621	X_3110621_SNP [dm3] X_3216588_SNP [dm6]	G	C	1.665e^-4	0.883	INTRON dnc
X	10030942	X_10030942_SNP [dm3] X_10136909_SNP [dm6]	C	T	1.668e^-4	0.883	INTRON CR44894 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16864584	2R_16864584_SNP [dm3] 2R_20977079_SNP [dm6]	G	A	1.683e^-4	0.883	UTR_5_PRIME CG9344 DOWNSTREAM CG15650 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	6451169	X_6451169_SNP [dm3] X_6557136_SNP [dm6]	A	T	1.689e^-4	0.883	SYNONYMOUS_CODING CG34417 INTRON CG34417
X	8133270	X_8133270_INS [dm3] X_8239237_INS [dm6]	G	GTAGATG	1.696e^-4	0.883	UTR_3_PRIME sdt
3R	13600157	3R_13600157_SNP [dm3] 3R_17774435_SNP [dm6]	T	G	1.705e^-4	0.883	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3R	14660016	3R_14660016_SNP [dm3] 3R_18834294_SNP [dm6]	G	A	1.713e^-4	0.883	INTRON CG18208
2R	17028512	2R_17028512_SNP [dm3] 2R_21141007_SNP [dm6]	A	C	1.720e^-4	0.883	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	9147026	2R_9147026_SNP [dm3] 2R_13259521_SNP [dm6]	T	A	1.720e^-4	0.883	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
X	6898428	X_6898428_SNP [dm3] X_7004395_SNP [dm6]	A	C	1.723e^-4	0.883	DOWNSTREAM Inx2 INTRON Inx7
2L	15281222	2L_15281222_SNP [dm3] 2L_15281222_SNP [dm6]	A	G	1.736e^-4	0.883	DOWNSTREAM CR45349 INTERGENIC
2R	9147438	2R_9147438_SNP [dm3] 2R_13259933_SNP [dm6]	G	A	1.743e^-4	0.883	UPSTREAM CG42319 INTERGENIC
3R	22618992	3R_22618992_SNP [dm3] 3R_26793270_SNP [dm6]	A	G	1.756e^-4	0.883	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	21060294	2R_21060294_SNP [dm3] 2R_25172771_SNP [dm6]	A	T	1.765e^-4	0.883	UPSTREAM Sfp60F DOWNSTREAM PebII INTERGENIC
3R	4934322	3R_4934322_SNP [dm3] 3R_9108600_SNP [dm6]	C	T	1.775e^-4	0.883	INTRON pum
X	19871890	X_19871890_SNP [dm3] X_19977857_SNP [dm6]	C	T	1.776e^-4	0.883	INTERGENIC
3R	25125893	3R_25125893_INS [dm3] 3R_29300171_INS [dm6]	A	AA	1.778e^-4	0.883	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	25125906	3R_25125906_SNP [dm3] 3R_29300184_SNP [dm6]	A	C	1.778e^-4	0.883	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	26618205	3R_26618205_SNP [dm3] 3R_30792483_SNP [dm6]	C	T	1.781e^-4	0.883	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
X	18115559	X_18115559_SNP [dm3] X_18221526_SNP [dm6]	C	T	1.786e^-4	0.883	INTRON CG33639	TF binding site mE1_TFBS_chinmo
2R	14452456	2R_14452456_SNP [dm3] 2R_18564951_SNP [dm6]	G	A	1.786e^-4	0.883	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11532947	3L_11532947_SNP [dm3] 3L_11539847_SNP [dm6]	A	G	1.791e^-4	0.883	INTRON Mob2
3R	6105593	3R_6105593_SNP [dm3] 3R_10279871_SNP [dm6]	C	T	1.798e^-4	0.883	INTRON CG43143
3R	21344585	3R_21344585_SNP [dm3] 3R_25518863_SNP [dm6]	G	T	1.801e^-4	0.883	INTRON msi	TF binding site mE1_TFBS_Trl
3R	10875304	3R_10875304_INS [dm3] 3R_15049582_INS [dm6]	ACC	TATGTA	1.807e^-4	0.883	INTERGENIC
3R	18780271	3R_18780271_SNP [dm3] 3R_22954549_SNP [dm6]	G	A	1.809e^-4	0.883	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	3129824	2L_3129824_SNP [dm3] 2L_3129824_SNP [dm6]	T	C	1.809e^-4	0.883	DOWNSTREAM CG15403 INTRON toc
2R	19306885	2R_19306885_SNP [dm3] 2R_23419362_SNP [dm6]	A	G	1.811e^-4	0.883	INTRON CG9812
X	19871664	X_19871664_SNP [dm3] X_19977631_SNP [dm6]	C	G	1.815e^-4	0.883	INTERGENIC
3R	27867697	3R_27867697_INS [dm3] 3R_32041975_INS [dm6]	CCA	AGTGGTGAGTGGC...	1.815e^-4	0.883	INTERGENIC
2R	11339584	2R_11339584_SNP [dm3] 2R_15452079_SNP [dm6]	G	C	1.836e^-4	0.883	INTRON CG43729
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	1.837e^-4	0.883	INTRON dnc
3L	8207850	3L_8207850_SNP [dm3] 3L_8214750_SNP [dm6]	T	C	1.839e^-4	0.883	UPSTREAM CG8012 INTERGENIC
2R	18542660	2R_18542660_SNP [dm3] 2R_22655155_SNP [dm6]	T	C	1.842e^-4	0.883	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other INTRON CG30196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6791093	2R_6791093_SNP [dm3] 2R_10903588_SNP [dm6]	C	T	1.845e^-4	0.883	START_GAINED CG12943 UTR_5_PRIME CG12943
3R	10435085	3R_10435085_SNP [dm3] 3R_14609363_SNP [dm6]	G	T	1.849e^-4	0.883	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11276747	3L_11276747_SNP [dm3] 3L_11283647_SNP [dm6]	C	T	1.859e^-4	0.883	INTERGENIC
2R	13560959	2R_13560959_SNP [dm3] 2R_17673454_SNP [dm6]	G	A	1.862e^-4	0.883	UTR_3_PRIME Sema-1b UPSTREAM P32
X	12798502	X_12798502_SNP [dm3] X_12904469_SNP [dm6]	C	T	1.862e^-4	0.883	SYNONYMOUS_CODING CG4404 UPSTREAM CG4407	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4668341	3L_4668341_SNP [dm3] 3L_4668341_SNP [dm6]	A	G	1.866e^-4	0.883	UPSTREAM CG32236 INTRON axo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12415207	2L_12415207_SNP [dm3] 2L_12415207_SNP [dm6]	A	G	1.867e^-4	0.883	INTRON vir-1
2R	16340634	2R_16340634_SNP [dm3] 2R_20453129_SNP [dm6]	A	G	1.869e^-4	0.883	INTRON CG12484
2L	4933597	2L_4933597_SNP [dm3] 2L_4933597_SNP [dm6]	T	C	1.875e^-4	0.883	SYNONYMOUS_CODING hoe2
X	12355327	X_12355327_SNP [dm3] X_12461294_SNP [dm6]	A	G	1.881e^-4	0.883	INTRON Rab40
X	9721384	X_9721384_DEL [dm3] X_9827351_DEL [dm6]	AA	A	1.883e^-4	0.883	INTRON CG32698
3L	10464831	3L_10464831_DEL [dm3] 3L_10471731_DEL [dm6]	AA	G	1.883e^-4	0.883	INTERGENIC
X	18264596	X_18264596_SNP [dm3] X_18370563_SNP [dm6]	A	G	1.884e^-4	0.883	UPSTREAM CrebB & 1 other INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Trl
2R	12678631	2R_12678631_SNP [dm3] 2R_16791126_SNP [dm6]	G	A	1.890e^-4	0.883	SYNONYMOUS_CODING CG5522	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	5892862	3L_5892862_SNP [dm3] 3L_5899762_SNP [dm6]	C	T	1.893e^-4	0.883	DOWNSTREAM CG5592 INTRON CG32409	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	3523992	2L_3523992_SNP [dm3] 2L_3523992_SNP [dm6]	C	A	1.900e^-4	0.883	UTR_5_PRIME Sr-CIV
2L	9443469	2L_9443469_SNP [dm3] 2L_9443469_SNP [dm6]	C	T	1.902e^-4	0.883	INTRON numb
2L	9445125	2L_9445125_SNP [dm3] 2L_9445125_SNP [dm6]	T	C	1.904e^-4	0.883	INTRON numb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16864990	2R_16864990_SNP [dm3] 2R_20977485_SNP [dm6]	G	T	1.905e^-4	0.883	UTR_3_PRIME CG9344 DOWNSTREAM CG15650 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	4933968	2L_4933968_SNP [dm3] 2L_4933968_SNP [dm6]	G	A	1.906e^-4	0.883	INTRON hoe2
3R	14395022	3R_14395022_SNP [dm3] 3R_18569300_SNP [dm6]	G	A	1.909e^-4	0.883	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2R	17725920	2R_17725920_SNP [dm3] 2R_21838415_SNP [dm6]	C	T	1.917e^-4	0.883	SYNONYMOUS_CODING CG4372
2L	11930045	2L_11930045_SNP [dm3] 2L_11930045_SNP [dm6]	C	T	1.918e^-4	0.883	INTERGENIC
3L	5888622	3L_5888622_SNP [dm3] 3L_5895522_SNP [dm6]	G	T	1.937e^-4	0.883	DOWNSTREAM Pole2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8402577	X_8402577_SNP [dm3] X_8508544_SNP [dm6]	G	A	1.937e^-4	0.883	INTRON CG33181
3R	18753175	3R_18753175_SNP [dm3] 3R_22927453_SNP [dm6]	A	C	1.937e^-4	0.883	INTRON klg
3L	712319	3L_712319_INS [dm3] 3L_712319_INS [dm6]	C	CA	1.947e^-4	0.883	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712342	3L_712342_SNP [dm3] 3L_712342_SNP [dm6]	A	T	1.947e^-4	0.883	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	13990762	3L_13990762_SNP [dm3] 3L_13997662_SNP [dm6]	G	A	1.948e^-4	0.883	NON_SYNONYMOUS_CODING CG17361 DOWNSTREAM CG17359	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15401423	3L_15401423_SNP [dm3] 3L_15408323_SNP [dm6]	A	T	1.953e^-4	0.883	DOWNSTREAM CG33259 INTERGENIC
3L	11708590	3L_11708590_SNP [dm3] 3L_11715490_SNP [dm6]	G	A	1.956e^-4	0.883	UPSTREAM CG14132 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	15213586	3L_15213586_SNP [dm3] 3L_15220486_SNP [dm6]	T	G	1.966e^-4	0.883	INTERGENIC
X	16154167	X_16154167_SNP [dm3] X_16260134_SNP [dm6]	T	A	1.969e^-4	0.883	INTERGENIC
X	10443026	X_10443026_SNP [dm3] X_10548993_SNP [dm6]	C	T	1.971e^-4	0.883	INTRON spri
2R	19024800	2R_19024800_SNP [dm3] 2R_23137277_SNP [dm6]	G	A	1.977e^-4	0.883	INTERGENIC
3L	14389469	3L_14389469_SNP [dm3] 3L_14396369_SNP [dm6]	C	G	1.982e^-4	0.883	INTERGENIC
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	1.987e^-4	0.883	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13360239	3R_13360239_INS [dm3] 3R_17534517_INS [dm6]	T	AA	1.998e^-4	0.883	UTR_5_PRIME CG5823 UPSTREAM P5cr-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	13863269	2L_13863269_SNP [dm3] 2L_13863269_SNP [dm6]	G	C	2.009e^-4	0.883	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	10811113	3R_10811113_SNP [dm3] 3R_14985391_SNP [dm6]	G	A	2.010e^-4	0.883	INTERGENIC
2L	2360614	2L_2360614_SNP [dm3] 2L_2360614_SNP [dm6]	A	G	2.012e^-4	0.883	INTRON Rab5
X	16848592	X_16848592_SNP [dm3] X_16954559_SNP [dm6]	A	G	2.013e^-4	0.883	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	18265153	X_18265153_SNP [dm3] X_18371120_SNP [dm6]	G	T	2.018e^-4	0.883	UTR_5_PRIME CrebB UPSTREAM CrebB INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	17060675	2R_17060675_SNP [dm3] 2R_21173170_SNP [dm6]	A	G	2.022e^-4	0.883	SPLICE_SITE_REGION Xpd INTRON Xpd	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	22518319	3R_22518319_SNP [dm3] 3R_26692597_SNP [dm6]	C	T	2.023e^-4	0.883	UTR_3_PRIME TwdlQ	TF binding site mE1_TFBS_cad
2R	16998554	2R_16998554_SNP [dm3] 2R_21111049_SNP [dm6]	A	T	2.027e^-4	0.883	INTRON ktub
2L	5496684	2L_5496684_SNP [dm3] 2L_5496684_SNP [dm6]	A	G	2.028e^-4	0.883	INTERGENIC
3R	6105675	3R_6105675_SNP [dm3] 3R_10279953_SNP [dm6]	T	A	2.031e^-4	0.883	INTRON CG43143
3L	1570866	3L_1570866_SNP [dm3] 3L_1570866_SNP [dm6]	T	C	2.048e^-4	0.883	INTRON CG12004	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	4956302	2R_4956302_SNP [dm3] 2R_9068797_SNP [dm6]	C	T	2.053e^-4	0.883	UPSTREAM ana INTRON ana
3L	3699344	3L_3699344_SNP [dm3] 3L_3699344_SNP [dm6]	A	G	2.055e^-4	0.883	INTERGENIC
2L	19715501	2L_19715501_SNP [dm3] 2L_19715501_SNP [dm6]	C	T	2.058e^-4	0.883	INTRON Lar	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2R	6567949	2R_6567949_SNP [dm3] 2R_10680444_SNP [dm6]	A	C	2.067e^-4	0.883	INTRON stan	TF binding site mE1_TFBS_Trl
2R	17122056	2R_17122056_SNP [dm3] 2R_21234551_SNP [dm6]	C	T	2.071e^-4	0.883	INTRON ASPP
2L	20685197	2L_20685197_SNP [dm3] 2L_20685197_SNP [dm6]	T	C	2.074e^-4	0.883	UTR_3_PRIME Hr38
3L	1561196	3L_1561196_SNP [dm3] 3L_1561196_SNP [dm6]	G	T	2.076e^-4	0.883	NON_SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	7938431	3L_7938431_SNP [dm3] 3L_7945331_SNP [dm6]	G	A	2.078e^-4	0.883	DOWNSTREAM CG43880 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21081580	X_21081580_SNP [dm3] X_21210553_SNP [dm6]	A	G	2.107e^-4	0.883	INTRON CG32521
X	10534108	X_10534108_SNP [dm3] X_10640075_SNP [dm6]	A	G	2.113e^-4	0.883	INTRON X11Lbeta
3L	3103931	3L_3103931_SNP [dm3] 3L_3103931_SNP [dm6]	T	C	2.129e^-4	0.883	INTRON Cht7
2L	17333598	2L_17333598_SNP [dm3] 2L_17333598_SNP [dm6]	G	A	2.136e^-4	0.883	INTERGENIC
3L	412023	3L_412023_SNP [dm3] 3L_412023_SNP [dm6]	G	T	2.138e^-4	0.883	INTERGENIC
3R	6253185	3R_6253185_SNP [dm3] 3R_10427463_SNP [dm6]	G	C	2.140e^-4	0.883	INTERGENIC
3R	5138023	3R_5138023_SNP [dm3] 3R_9312301_SNP [dm6]	T	G	2.149e^-4	0.883	INTRON CG8861	TF binding site BDTNP1_TFBS_twi
2R	14271036	2R_14271036_SNP [dm3] 2R_18383531_SNP [dm6]	A	T	2.154e^-4	0.883	UPSTREAM IM1 & 1 other INTERGENIC
3R	6105532	3R_6105532_SNP [dm3] 3R_10279810_SNP [dm6]	C	T	2.155e^-4	0.883	INTRON CG43143
3L	712377	3L_712377_SNP [dm3] 3L_712377_SNP [dm6]	A	C	2.156e^-4	0.883	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	12898355	3R_12898355_SNP [dm3] 3R_17072633_SNP [dm6]	A	G	2.171e^-4	0.883	UTR_5_PRIME Ns1 UPSTREAM mRpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10998487	2R_10998487_SNP [dm3] 2R_15110982_SNP [dm6]	T	C	2.176e^-4	0.883	INTERGENIC
2R	15596175	2R_15596175_DEL [dm3] 2R_19708670_DEL [dm6]	TTAAA	T	2.180e^-4	0.883	INTERGENIC
2R	15596182	2R_15596182_DEL [dm3] 2R_19708677_DEL [dm6]	TA	T	2.180e^-4	0.883	INTERGENIC
2L	10085825	2L_10085825_SNP [dm3] 2L_10085825_SNP [dm6]	C	T	2.191e^-4	0.883	INTRON CG44153
X	14588334	X_14588334_SNP [dm3] X_14694301_SNP [dm6]	A	C	2.206e^-4	0.883	INTRON NetB
3L	7894419	3L_7894419_SNP [dm3] 3L_7901319_SNP [dm6]	T	C	2.213e^-4	0.883	SYNONYMOUS_CODING pbl INTRON pbl
2L	8696998	2L_8696998_SNP [dm3] 2L_8696998_SNP [dm6]	C	G	2.214e^-4	0.883	INTRON Hnf4	TF binding site mE1_TFBS_cnc
3L	2646601	3L_2646601_SNP [dm3] 3L_2646601_SNP [dm6]	T	C	2.215e^-4	0.883	UTR_3_PRIME CG1143	TF binding site mE1_TFBS_cad
3R	18494639	3R_18494639_SNP [dm3] 3R_22668917_SNP [dm6]	T	G	2.221e^-4	0.883	INTRON CG45058	TF binding site BDTNP1_TFBS_dl
2L	7615841	2L_7615841_SNP [dm3] 2L_7615841_SNP [dm6]	C	T	2.222e^-4	0.883	SYNONYMOUS_CODING CG6739 UTR_3_PRIME CG6739
2R	16863939	2R_16863939_SNP [dm3] 2R_20976434_SNP [dm6]	T	A	2.226e^-4	0.883	UPSTREAM CG9344 INTRON CG34115	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11409444	2R_11409444_SNP [dm3] 2R_15521939_SNP [dm6]	A	G	2.226e^-4	0.883	SPLICE_SITE_REGION Khc-73 SYNONYMOUS_CODING Khc-73
3R	15384897	3R_15384897_DEL [dm3] 3R_19559175_DEL [dm6]	TT	T	2.227e^-4	0.883	INTRON Dys
2R	10846294	2R_10846294_SNP [dm3] 2R_14958789_SNP [dm6]	G	T	2.229e^-4	0.883	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26618148	3R_26618148_SNP [dm3] 3R_30792426_SNP [dm6]	T	G	2.242e^-4	0.883	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
X	21458777	X_21458777_SNP [dm3] X_21587750_SNP [dm6]	C	T	2.243e^-4	0.883	INTERGENIC
3L	4545922	3L_4545922_SNP [dm3] 3L_4545922_SNP [dm6]	G	A	2.245e^-4	0.883	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5234139	3L_5234139_INS [dm3] 3L_5241039_INS [dm6]	C	CC	2.248e^-4	0.883	INTRON shep
3R	12745588	3R_12745588_SNP [dm3] 3R_16919866_SNP [dm6]	A	G	2.255e^-4	0.883	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	11606033	3L_11606033_SNP [dm3] 3L_11612933_SNP [dm6]	A	C	2.255e^-4	0.883	NON_SYNONYMOUS_CODING Muc68Ca
3L	6100256	3L_6100256_SNP [dm3] 3L_6107156_SNP [dm6]	A	C	2.261e^-4	0.883	INTRON Ets65A	TF binding site mE1_TFBS_cad
3L	2643105	3L_2643105_DEL [dm3] 3L_2643105_DEL [dm6]	TAATAT	T	2.270e^-4	0.883	INTRON CG14949
X	11409403	X_11409403_SNP [dm3] X_11515370_SNP [dm6]	A	T	2.273e^-4	0.883	INTRON Drak	TF binding site mE1_TFBS_Kr
3L	14057292	3L_14057292_SNP [dm3] 3L_14064192_SNP [dm6]	C	T	2.274e^-4	0.883	INTRON CG32138	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	2660003	2L_2660003_SNP [dm3] 2L_2660003_SNP [dm6]	T	A	2.278e^-4	0.883	INTERGENIC
X	13739147	X_13739147_SNP [dm3] X_13845114_SNP [dm6]	A	G	2.287e^-4	0.883	INTRON AMPdeam	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu
3L	712455	3L_712455_SNP [dm3] 3L_712455_SNP [dm6]	C	T	2.288e^-4	0.883	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	9816859	X_9816859_DEL [dm3] X_9922826_DEL [dm6]	CC	C	2.292e^-4	0.883	INTERGENIC
2L	17861776	2L_17861776_SNP [dm3] 2L_17861776_SNP [dm6]	T	A	2.292e^-4	0.883	INTRON CadN2
2L	17861799	2L_17861799_SNP [dm3] 2L_17861799_SNP [dm6]	A	C	2.294e^-4	0.883	INTRON CadN2
X	17259658	X_17259658_SNP [dm3] X_17365625_SNP [dm6]	T	C	2.297e^-4	0.883	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
X	5827042	X_5827042_INS [dm3] X_5933009_INS [dm6]	A	AA	2.299e^-4	0.883	INTRON CG3726
3L	7257565	3L_7257565_SNP [dm3] 3L_7264465_SNP [dm6]	C	T	2.300e^-4	0.883	UPSTREAM CG14830 INTERGENIC
X	2689994	X_2689994_SNP [dm3] X_2795961_SNP [dm6]	G	A	2.301e^-4	0.883	INTRON kirre & 1 other	regulatory region REDfly_CRMs
X	2690011	X_2690011_SNP [dm3] X_2795978_SNP [dm6]	G	A	2.301e^-4	0.883	INTRON kirre & 1 other	regulatory region REDfly_CRMs
X	2690031	X_2690031_SNP [dm3] X_2795998_SNP [dm6]	A	G	2.301e^-4	0.883	INTRON kirre & 1 other	regulatory region REDfly_CRMs
2R	13556691	2R_13556691_SNP [dm3] 2R_17669186_SNP [dm6]	G	T	2.312e^-4	0.883	UTR_3_PRIME eIF3-S8 UPSTREAM CG30108 & 1 other DOWNSTREAM eIF3-S8	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cnc
3L	712501	3L_712501_SNP [dm3] 3L_712501_SNP [dm6]	C	G	2.320e^-4	0.883	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	14090881	X_14090881_SNP [dm3] X_14196848_SNP [dm6]	T	C	2.340e^-4	0.883	SYNONYMOUS_CODING yl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19297196	2R_19297196_SNP [dm3] 2R_23409673_SNP [dm6]	C	G	2.356e^-4	0.883	INTERGENIC
2R	15941043	2R_15941043_SNP [dm3] 2R_20053538_SNP [dm6]	T	G	2.357e^-4	0.883	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
X	6672816	X_6672816_INS [dm3] X_6778783_INS [dm6]	C	CC	2.361e^-4	0.883	INTRON shf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco
X	14845226	X_14845226_SNP [dm3] X_14951193_SNP [dm6]	T	C	2.364e^-4	0.883	UTR_5_PRIME pdgy UPSTREAM pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	20262267	X_20262267_SNP [dm3] X_20391240_SNP [dm6]	A	G	2.365e^-4	0.883	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8447278	2L_8447278_SNP [dm3] 2L_8447278_SNP [dm6]	T	G	2.366e^-4	0.883	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	9485629	2L_9485629_SNP [dm3] 2L_9485629_SNP [dm6]	G	A	2.366e^-4	0.883	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10998554	2R_10998554_INS [dm3] 2R_15111049_INS [dm6]	A	ACCATAAGAACCACTAATGG...	2.368e^-4	0.883	INTERGENIC
3R	18780272	3R_18780272_SNP [dm3] 3R_22954550_SNP [dm6]	A	G	2.376e^-4	0.883	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	18418701	2R_18418701_SNP [dm3] 2R_22531196_SNP [dm6]	A	C	2.393e^-4	0.883	INTRON px
2R	18418702	2R_18418702_SNP [dm3] 2R_22531197_SNP [dm6]	C	A	2.393e^-4	0.883	INTRON px
3R	22936798	3R_22936798_SNP [dm3] 3R_27111076_SNP [dm6]	C	T	2.393e^-4	0.883	DOWNSTREAM CR45209 INTRON gb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3680456	3L_3680456_SNP [dm3] 3L_3680456_SNP [dm6]	G	T	2.395e^-4	0.883	INTERGENIC	TF binding site mE1_TFBS_cad
2L	15649286	2L_15649286_SNP [dm3] 2L_15649286_SNP [dm6]	A	G	2.396e^-4	0.883	SYNONYMOUS_CODING CG4587
2R	9131327	2R_9131327_SNP [dm3] 2R_13243822_SNP [dm6]	G	A	2.405e^-4	0.883	DOWNSTREAM CR45278 INTERGENIC
3L	5892565	3L_5892565_SNP [dm3] 3L_5899465_SNP [dm6]	C	T	2.410e^-4	0.883	UPSTREAM CG32409 DOWNSTREAM CG5592 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	6105630	3R_6105630_SNP [dm3] 3R_10279908_SNP [dm6]	T	A	2.418e^-4	0.883	INTRON CG43143
3L	1042781	3L_1042781_SNP [dm3] 3L_1042781_SNP [dm6]	T	C	2.428e^-4	0.883	INTRON bab1
3L	17665322	3L_17665322_SNP [dm3] 3L_17672222_SNP [dm6]	T	C	2.429e^-4	0.883	INTRON CG34251
X	3290362	X_3290362_SNP [dm3] X_3396329_SNP [dm6]	T	A	2.437e^-4	0.883	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5145560	3L_5145560_SNP [dm3] 3L_5152460_SNP [dm6]	T	A	2.441e^-4	0.883	UPSTREAM Srp54k & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
2R	7045208	2R_7045208_SNP [dm3] 2R_11157703_SNP [dm6]	C	A	2.443e^-4	0.883	INTRON CG13229
2R	16998506	2R_16998506_SNP [dm3] 2R_21111001_SNP [dm6]	A	G	2.445e^-4	0.883	INTRON ktub
2R	14978887	2R_14978887_SNP [dm3] 2R_19091382_SNP [dm6]	G	A	2.447e^-4	0.883	SYNONYMOUS_CODING 5-HT1A
2R	17920188	2R_17920188_DEL [dm3] 2R_22032683_DEL [dm6]	GGGCTGG	G	2.454e^-4	0.883	INTRON CG34370
3L	12439132	3L_12439132_DEL [dm3] 3L_12446032_DEL [dm6]	TT	T	2.455e^-4	0.883	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21184729	X_21184729_SNP [dm3] X_21313702_SNP [dm6]	C	T	2.460e^-4	0.883	SYNONYMOUS_CODING CG1801
X	4513872	X_4513872_INS [dm3] X_4619839_INS [dm6]	CG	ATCTCTTATT	2.471e^-4	0.883	INTRON peb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	12418606	2L_12418606_SNP [dm3] 2L_12418606_SNP [dm6]	C	T	2.472e^-4	0.883	INTRON vir-1
2R	12821148	2R_12821148_SNP [dm3] 2R_16933643_SNP [dm6]	C	T	2.474e^-4	0.883	INTRON Pkc53E	TF binding site BDTNP1_TFBS_twi
3L	11168307	3L_11168307_SNP [dm3] 3L_11175207_SNP [dm6]	T	A	2.480e^-4	0.883	INTRON CG14142
2R	11330066	2R_11330066_SNP [dm3] 2R_15442561_SNP [dm6]	G	T	2.481e^-4	0.883	INTRON CG43729
3L	7921405	3L_7921405_SNP [dm3] 3L_7928305_SNP [dm6]	C	T	2.481e^-4	0.883	SYNONYMOUS_CODING syd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14271043	2R_14271043_DEL [dm3] 2R_18383538_DEL [dm6]	TAATGTCTTC	T	2.490e^-4	0.883	UPSTREAM IM1 & 1 other INTERGENIC
3R	17353856	3R_17353856_SNP [dm3] 3R_21528134_SNP [dm6]	C	T	2.493e^-4	0.883	UTR_3_PRIME CG7956 DOWNSTREAM CG7956	TF binding site BDTNP1_TFBS_slp1
2L	1210136	2L_1210136_SNP [dm3] 2L_1210136_SNP [dm6]	T	A	2.496e^-4	0.883	INTERGENIC
3L	10518960	3L_10518960_SNP [dm3] 3L_10525860_SNP [dm6]	T	G	2.498e^-4	0.883	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15903310	2R_15903310_DEL [dm3] 2R_20015805_DEL [dm6]	TGA	T	2.505e^-4	0.883	DOWNSTREAM CR44630 INTERGENIC
3L	1103424	3L_1103424_DEL [dm3] 3L_1103424_DEL [dm6]	CC	C	2.507e^-4	0.883	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	15401421	3L_15401421_SNP [dm3] 3L_15408321_SNP [dm6]	G	A	2.507e^-4	0.883	DOWNSTREAM CG33259 INTERGENIC
2R	12112716	2R_12112716_SNP [dm3] 2R_16225211_SNP [dm6]	A	G	2.508e^-4	0.883	UTR_5_PRIME CG15706
X	21458725	X_21458725_SNP [dm3] X_21587698_SNP [dm6]	T	C	2.511e^-4	0.883	INTERGENIC
3L	19429697	3L_19429697_SNP [dm3] 3L_19436597_SNP [dm6]	C	G	2.522e^-4	0.883	INTERGENIC
X	16855642	X_16855642_SNP [dm3] X_16961609_SNP [dm6]	C	A	2.528e^-4	0.883	SYNONYMOUS_CODING CG9086	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3315081	3L_3315081_SNP [dm3] 3L_3315081_SNP [dm6]	T	C	2.529e^-4	0.883	SYNONYMOUS_CODING Drsl3 UPSTREAM Drsl4 DOWNSTREAM Drsl2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17877822	3R_17877822_SNP [dm3] 3R_22052100_SNP [dm6]	C	T	2.540e^-4	0.883	INTRON how	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	15126711	2L_15126711_SNP [dm3] 2L_15126711_SNP [dm6]	A	G	2.541e^-4	0.883	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14344614	3R_14344614_SNP [dm3] 3R_18518892_SNP [dm6]	T	A	2.550e^-4	0.883	INTRON fru
2R	10998617	2R_10998617_SNP [dm3] 2R_15111112_SNP [dm6]	C	T	2.552e^-4	0.883	INTERGENIC
X	18262665	X_18262665_SNP [dm3] X_18368632_SNP [dm6]	T	G	2.554e^-4	0.883	INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	9823760	3R_9823760_SNP [dm3] 3R_13998038_SNP [dm6]	T	C	2.557e^-4	0.883	INTRON rdx	TF binding site mE1_TFBS_HSA
3L	5639635	3L_5639635_SNP [dm3] 3L_5646535_SNP [dm6]	C	A	2.558e^-4	0.883	SYNONYMOUS_CODING Blimp-1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5234118	3L_5234118_SNP [dm3] 3L_5241018_SNP [dm6]	C	G	2.561e^-4	0.883	INTRON shep
X	15413677	X_15413677_SNP [dm3] X_15519644_SNP [dm6]	C	G	2.562e^-4	0.883	INTRON Ac13E
3L	19130240	3L_19130240_SNP [dm3] 3L_19137140_SNP [dm6]	T	A	2.565e^-4	0.883	INTRON CG14082
3R	15072981	3R_15072981_SNP [dm3] 3R_19247259_SNP [dm6]	T	C	2.568e^-4	0.883	UTR_3_PRIME CG5217	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	7000929	2L_7000929_SNP [dm3] 2L_7000929_SNP [dm6]	T	A	2.582e^-4	0.883	INTRON uif
2L	3832016	2L_3832016_SNP [dm3] 2L_3832016_SNP [dm6]	G	A	2.583e^-4	0.883	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE
3L	11843819	3L_11843819_SNP [dm3] 3L_11850719_SNP [dm6]	A	C	2.585e^-4	0.883	UTR_3_PRIME CG44837
2R	8933808	2R_8933808_SNP [dm3] 2R_13046303_SNP [dm6]	C	G	2.588e^-4	0.883	UTR_3_PRIME CG13323 DOWNSTREAM CG13323
2L	14043664	2L_14043664_SNP [dm3] 2L_14043664_SNP [dm6]	T	C	2.601e^-4	0.883	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9557212	3L_9557212_SNP [dm3] 3L_9564112_SNP [dm6]	A	T	2.607e^-4	0.883	INTRON CG42673
2R	3972263	2R_3972263_SNP [dm3] 2R_8084758_SNP [dm6]	C	A	2.608e^-4	0.883	NON_SYNONYMOUS_CODING sut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14815465	3L_14815465_SNP [dm3] 3L_14822365_SNP [dm6]	G	A	2.609e^-4	0.883	INTRON CG17839
3R	26667135	3R_26667135_SNP [dm3] 3R_30841413_SNP [dm6]	A	C	2.610e^-4	0.883	UTR_3_PRIME CG15544	TF binding site mE1_TFBS_cad
2R	10847155	2R_10847155_SNP [dm3] 2R_14959650_SNP [dm6]	G	T	2.611e^-4	0.883	INTRON aPKC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14271079	2R_14271079_MNP [dm3] 2R_18383574_MNP [dm6]	ACA	CAG	2.621e^-4	0.883	UPSTREAM IM1 & 2 others INTERGENIC
3L	712235	3L_712235_SNP [dm3] 3L_712235_SNP [dm6]	C	T	2.624e^-4	0.883	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	22134371	3R_22134371_SNP [dm3] 3R_26308649_SNP [dm6]	G	A	2.627e^-4	0.883	INTERGENIC
2L	2045972	2L_2045972_SNP [dm3] 2L_2045972_SNP [dm6]	G	A	2.629e^-4	0.883	NON_SYNONYMOUS_CODING Kebab UPSTREAM CR45298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18930447	2L_18930447_SNP [dm3] 2L_18930447_SNP [dm6]	G	A	2.629e^-4	0.883	INTRON ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18909753	3R_18909753_SNP [dm3] 3R_23084031_SNP [dm6]	G	A	2.637e^-4	0.883	INTRON CG13830	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14031895	2L_14031895_SNP [dm3] 2L_14031895_SNP [dm6]	T	C	2.640e^-4	0.883	UPSTREAM CG18095 DOWNSTREAM CR45284 INTERGENIC
2L	1867621	2L_1867621_SNP [dm3] 2L_1867621_SNP [dm6]	G	T	2.640e^-4	0.883	INTRON CG31663
2R	9131300	2R_9131300_SNP [dm3] 2R_13243795_SNP [dm6]	A	T	2.644e^-4	0.883	DOWNSTREAM CR45278 INTERGENIC
3L	14561384	3L_14561384_SNP [dm3] 3L_14568284_SNP [dm6]	G	A	2.644e^-4	0.883	DOWNSTREAM CG42758 INTERGENIC
2R	11872612	2R_11872612_SNP [dm3] 2R_15985107_SNP [dm6]	T	C	2.651e^-4	0.883	SYNONYMOUS_CODING Strn-Mlck
2R	4953988	2R_4953988_SNP [dm3] 2R_9066483_SNP [dm6]	T	C	2.651e^-4	0.883	INTRON ana	regulatory region REDfly_CRMs
3L	9873427	3L_9873427_SNP [dm3] 3L_9880327_SNP [dm6]	A	G	2.656e^-4	0.883	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
3L	13317212	3L_13317212_SNP [dm3] 3L_13324112_SNP [dm6]	T	C	2.658e^-4	0.883	DOWNSTREAM CR44558 INTERGENIC
2R	5234075	2R_5234075_SNP [dm3] 2R_9346570_SNP [dm6]	T	G	2.658e^-4	0.883	SYNONYMOUS_CODING Or45a INTRON CG13954 & 1 other	TF binding site mE1_TFBS_chinmo
3L	711790	3L_711790_SNP [dm3] 3L_711790_SNP [dm6]	A	T	2.659e^-4	0.883	UTR_5_PRIME CG13896	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	9147063	2R_9147063_SNP [dm3] 2R_13259558_SNP [dm6]	G	A	2.660e^-4	0.883	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
X	14154449	X_14154449_SNP [dm3] X_14260416_SNP [dm6]	G	T	2.664e^-4	0.883	UPSTREAM CG1461 INTERGENIC
2R	10382797	2R_10382797_SNP [dm3] 2R_14495292_SNP [dm6]	A	G	2.666e^-4	0.883	SYNONYMOUS_CODING L	TF binding site mE1_TFBS_cad
3L	712322	3L_712322_SNP [dm3] 3L_712322_SNP [dm6]	A	G	2.672e^-4	0.883	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	16864024	2R_16864024_SNP [dm3] 2R_20976519_SNP [dm6]	A	C	2.674e^-4	0.883	UPSTREAM CG9344 INTRON CG34115	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	15767069	3R_15767069_SNP [dm3] 3R_19941347_SNP [dm6]	G	A	2.675e^-4	0.883	INTRON Hs6st
2R	16786743	2R_16786743_SNP [dm3] 2R_20899238_SNP [dm6]	T	C	2.675e^-4	0.883	DOWNSTREAM CR43160 INTRON otp	regulatory region REDfly_CRMs
3L	2646631	3L_2646631_SNP [dm3] 3L_2646631_SNP [dm6]	T	A	2.675e^-4	0.883	UTR_3_PRIME CG1143 DOWNSTREAM CG1143	TF binding site mE1_TFBS_cad
3L	14556127	3L_14556127_SNP [dm3] 3L_14563027_SNP [dm6]	G	T	2.680e^-4	0.883	DOWNSTREAM CG34039 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1
2L	7451999	2L_7451999_SNP [dm3] 2L_7451999_SNP [dm6]	G	A	2.691e^-4	0.883	UPSTREAM santa-maria DOWNSTREAM Gr28a INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3L	711857	3L_711857_SNP [dm3] 3L_711857_SNP [dm6]	A	C	2.698e^-4	0.883	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	16709971	3R_16709971_SNP [dm3] 3R_20884249_SNP [dm6]	A	T	2.699e^-4	0.883	INTERGENIC	TF binding site mE1_TFBS_cad
3L	10450795	3L_10450795_SNP [dm3] 3L_10457695_SNP [dm6]	G	A	2.713e^-4	0.883	INTERGENIC
3L	10450797	3L_10450797_SNP [dm3] 3L_10457697_SNP [dm6]	G	A	2.713e^-4	0.883	INTERGENIC
2L	606452	2L_606452_SNP [dm3] 2L_606452_SNP [dm6]	C	T	2.713e^-4	0.883	DOWNSTREAM CR43648 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3257613	2R_3257613_SNP [dm3] 2R_7370108_SNP [dm6]	C	T	2.714e^-4	0.883	INTRON Dscam1
3L	9508876	3L_9508876_SNP [dm3] 3L_9515776_SNP [dm6]	G	T	2.723e^-4	0.883	INTRON CG33700
2L	9446671	2L_9446671_SNP [dm3] 2L_9446671_SNP [dm6]	A	C	2.725e^-4	0.883	INTRON numb	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
3L	6100265	3L_6100265_SNP [dm3] 3L_6107165_SNP [dm6]	C	T	2.727e^-4	0.883	INTRON Ets65A	TF binding site mE1_TFBS_cad
X	5120460	X_5120460_SNP [dm3] X_5226427_SNP [dm6]	A	G	2.728e^-4	0.883	INTRON CG15465 & 1 other
X	12600147	X_12600147_SNP [dm3] X_12706114_SNP [dm6]	C	A	2.729e^-4	0.883	UTR_5_PRIME CG15725 INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14121064	X_14121064_SNP [dm3] X_14227031_SNP [dm6]	G	A	2.731e^-4	0.883	SYNONYMOUS_CODING mRpL38	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19836530	2L_19836530_SNP [dm3] 2L_19836530_SNP [dm6]	A	G	2.742e^-4	0.883	INTRON sick	TF binding site mE1_TFBS_cad
2R	19007092	2R_19007092_SNP [dm3] 2R_23119569_SNP [dm6]	G	T	2.743e^-4	0.883	INTERGENIC
3R	25759471	3R_25759471_SNP [dm3] 3R_29933749_SNP [dm6]	T	A	2.744e^-4	0.883	SYNONYMOUS_CODING CG42557 UTR_5_PRIME CG42558 UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11855480	2R_11855480_SNP [dm3] 2R_15967975_SNP [dm6]	G	T	2.746e^-4	0.883	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2R	15906467	2R_15906467_SNP [dm3] 2R_20018962_SNP [dm6]	T	C	2.758e^-4	0.883	INTERGENIC
2R	5141937	2R_5141937_SNP [dm3] 2R_9254432_SNP [dm6]	T	G	2.759e^-4	0.883	INTRON Pkn
2R	16287970	2R_16287970_SNP [dm3] 2R_20400465_SNP [dm6]	A	G	2.760e^-4	0.883	INTERGENIC
2L	588419	2L_588419_SNP [dm3] 2L_588419_SNP [dm6]	T	A	2.767e^-4	0.883	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
3R	15292424	3R_15292424_SNP [dm3] 3R_19466702_SNP [dm6]	T	G	2.768e^-4	0.883	INTRON Dys
2L	12325195	2L_12325195_INS [dm3] 2L_12325195_INS [dm6]	A	ACGTAAAGCAAAATATTTTC...	2.774e^-4	0.883	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16840396	2L_16840396_SNP [dm3] 2L_16840396_SNP [dm6]	T	C	2.778e^-4	0.883	UTR_3_PRIME SclA & 1 other INTRON SclA
3R	27100474	3R_27100474_SNP [dm3] 3R_31274752_SNP [dm6]	T	C	2.779e^-4	0.883	INTERGENIC
3L	4712167	3L_4712167_SNP [dm3] 3L_4712167_SNP [dm6]	G	A	2.783e^-4	0.883	INTRON RhoGEF64C
3L	2646310	3L_2646310_SNP [dm3] 3L_2646310_SNP [dm6]	T	C	2.784e^-4	0.883	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3257770	2R_3257770_SNP [dm3] 2R_7370265_SNP [dm6]	A	T	2.792e^-4	0.884	INTRON Dscam1	regulatory region REDfly_CRMs
3L	14385307	3L_14385307_SNP [dm3] 3L_14392207_SNP [dm6]	A	G	2.796e^-4	0.884	INTERGENIC
3R	21141048	3R_21141048_SNP [dm3] 3R_25315326_SNP [dm6]	G	T	2.800e^-4	0.884	INTRON CG10559
X	6890537	X_6890537_SNP [dm3] X_6996504_SNP [dm6]	T	A	2.808e^-4	0.885	INTRON Inx7 EXON CR43837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16619019	2L_16619019_SNP [dm3] 2L_16619019_SNP [dm6]	T	A	2.813e^-4	0.885	INTRON CG42389	TF binding site BDTNP1_TFBS_dl
2R	12976309	2R_12976309_SNP [dm3] 2R_17088804_SNP [dm6]	T	G	2.826e^-4	0.885	SYNONYMOUS_CODING Sply
2R	12456228	2R_12456228_SNP [dm3] 2R_16568723_SNP [dm6]	T	C	2.829e^-4	0.885	SYNONYMOUS_CODING CG4945	TF binding site mE1_TFBS_cad
2R	16965216	2R_16965216_SNP [dm3] 2R_21077711_SNP [dm6]	A	C	2.830e^-4	0.885	INTRON Treh
3L	16202254	3L_16202254_SNP [dm3] 3L_16209154_SNP [dm6]	C	T	2.835e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_cad
X	4865876	X_4865876_DEL [dm3] X_4971843_DEL [dm6]	ATATATATATATATAT...	A	2.836e^-4	0.885	INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	13265005	X_13265005_SNP [dm3] X_13370972_SNP [dm6]	G	A	2.843e^-4	0.885	UPSTREAM CG1640 DOWNSTREAM dmrt11E INTRON CG1640	TF binding site BDTNP1_TFBS_dl
X	5826894	X_5826894_INS [dm3] X_5932861_INS [dm6]	T	TT	2.858e^-4	0.886	INTRON CG3726
2R	13555652	2R_13555652_SNP [dm3] 2R_17668147_SNP [dm6]	C	A	2.859e^-4	0.886	SYNONYMOUS_CODING eIF3-S8	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12078185	2R_12078185_SNP [dm3] 2R_16190680_SNP [dm6]	C	A	2.870e^-4	0.886	NON_SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13556727	2R_13556727_SNP [dm3] 2R_17669222_SNP [dm6]	A	T	2.873e^-4	0.886	UTR_3_PRIME eIF3-S8 UPSTREAM CG30108 & 1 other DOWNSTREAM eIF3-S8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
2R	15903314	2R_15903314_SNP [dm3] 2R_20015809_SNP [dm6]	A	C	2.876e^-4	0.886	DOWNSTREAM CR44630 INTERGENIC
3L	7257559	3L_7257559_SNP [dm3] 3L_7264459_SNP [dm6]	G	A	2.876e^-4	0.886	UPSTREAM CG14830 INTERGENIC
X	16791329	X_16791329_SNP [dm3] X_16897296_SNP [dm6]	G	A	2.878e^-4	0.886	UPSTREAM CG33252 INTERGENIC
2L	15281172	2L_15281172_SNP [dm3] 2L_15281172_SNP [dm6]	G	A	2.884e^-4	0.886	DOWNSTREAM CR45349 INTERGENIC
3L	11276303	3L_11276303_SNP [dm3] 3L_11283203_SNP [dm6]	A	T	2.892e^-4	0.886	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15306037	2L_15306037_SNP [dm3] 2L_15306037_SNP [dm6]	T	A	2.900e^-4	0.886	INTERGENIC
2R	11128197	2R_11128197_SNP [dm3] 2R_15240692_SNP [dm6]	C	T	2.907e^-4	0.886	INTRON Fs
3L	19472074	3L_19472074_SNP [dm3] 3L_19478974_SNP [dm6]	G	A	2.925e^-4	0.886	UPSTREAM CR32207 DOWNSTREAM CR42842 INTERGENIC
3L	14835275	3L_14835275_INS [dm3] 3L_14842175_INS [dm6]	T	TTGCAA	2.926e^-4	0.886	INTRON CG17839
3R	14771141	3R_14771141_SNP [dm3] 3R_18945419_SNP [dm6]	G	C	2.929e^-4	0.886	INTRON CG42613
2R	10998591	2R_10998591_SNP [dm3] 2R_15111086_SNP [dm6]	G	T	2.934e^-4	0.886	INTERGENIC
2R	10998597	2R_10998597_SNP [dm3] 2R_15111092_SNP [dm6]	T	C	2.934e^-4	0.886	INTERGENIC
2R	10998602	2R_10998602_SNP [dm3] 2R_15111097_SNP [dm6]	A	T	2.934e^-4	0.886	INTERGENIC
2R	10998575	2R_10998575_SNP [dm3] 2R_15111070_SNP [dm6]	T	G	2.936e^-4	0.886	INTERGENIC
2R	10991694	2R_10991694_SNP [dm3] 2R_15104189_SNP [dm6]	T	C	2.940e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	19008611	2R_19008611_SNP [dm3] 2R_23121088_SNP [dm6]	G	A	2.944e^-4	0.886	INTERGENIC
3R	15072398	3R_15072398_SNP [dm3] 3R_19246676_SNP [dm6]	G	A	2.953e^-4	0.886	UPSTREAM unc79 DOWNSTREAM CG5217 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12355297	X_12355297_SNP [dm3] X_12461264_SNP [dm6]	C	A	2.957e^-4	0.886	INTRON Rab40
3L	3699414	3L_3699414_SNP [dm3] 3L_3699414_SNP [dm6]	C	T	2.961e^-4	0.886	INTERGENIC
2L	10129257	2L_10129257_SNP [dm3] 2L_10129257_SNP [dm6]	C	A	2.973e^-4	0.886	INTRON CG44153
2R	11964279	2R_11964279_SNP [dm3] 2R_16076774_SNP [dm6]	T	C	2.976e^-4	0.886	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	7321694	3R_7321694_SNP [dm3] 3R_11495972_SNP [dm6]	T	C	2.976e^-4	0.886	INTERGENIC
X	4094020	X_4094020_SNP [dm3] X_4199987_SNP [dm6]	T	C	2.979e^-4	0.886	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10793233	3L_10793233_SNP [dm3] 3L_10800133_SNP [dm6]	A	C	2.980e^-4	0.886	INTERGENIC
2L	9147166	2L_9147166_SNP [dm3] 2L_9147166_SNP [dm6]	C	A	2.984e^-4	0.886	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad
X	17503877	X_17503877_SNP [dm3] X_17609844_SNP [dm6]	G	T	2.990e^-4	0.886	INTERGENIC
3R	6253280	3R_6253280_SNP [dm3] 3R_10427558_SNP [dm6]	T	A	2.992e^-4	0.886	INTERGENIC
X	14843656	X_14843656_SNP [dm3] X_14949623_SNP [dm6]	A	T	3.004e^-4	0.888	INTRON pdgy
2R	10998606	2R_10998606_SNP [dm3] 2R_15111101_SNP [dm6]	A	C	3.008e^-4	0.888	INTERGENIC
3L	14556133	3L_14556133_SNP [dm3] 3L_14563033_SNP [dm6]	T	A	3.024e^-4	0.888	DOWNSTREAM CG34039 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1
2R	8452798	2R_8452798_SNP [dm3] 2R_12565293_SNP [dm6]	C	A	3.030e^-4	0.888	UPSTREAM CG33775 & 1 other INTERGENIC
X	12266372	X_12266372_SNP [dm3] X_12372339_SNP [dm6]	A	G	3.042e^-4	0.888	UPSTREAM CG2577 INTERGENIC
3L	5143626	3L_5143626_SNP [dm3] 3L_5150526_SNP [dm6]	G	A	3.043e^-4	0.888	SYNONYMOUS_CODING Gen DOWNSTREAM Aats-ala-m	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25760016	3R_25760016_SNP [dm3] 3R_29934294_SNP [dm6]	A	C	3.052e^-4	0.888	NON_SYNONYMOUS_CODING CG42558 UTR_3_PRIME CG42557 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad
3L	9661340	3L_9661340_SNP [dm3] 3L_9668240_SNP [dm6]	C	G	3.058e^-4	0.888	INTRON fry	TF binding site mE1_TFBS_cad
X	11103011	X_11103011_SNP [dm3] X_11208978_SNP [dm6]	A	T	3.060e^-4	0.888	INTERGENIC
3R	22518295	3R_22518295_SNP [dm3] 3R_26692573_SNP [dm6]	G	C	3.064e^-4	0.888	UTR_3_PRIME TwdlQ	TF binding site mE1_TFBS_cad
2R	3080414	2R_3080414_SNP [dm3] 2R_7192909_SNP [dm6]	C	A	3.077e^-4	0.888	UTR_5_PRIME pk INTRON pk	TF binding site mE1_TFBS_cad
2L	7343130	2L_7343130_SNP [dm3] 2L_7343130_SNP [dm6]	G	T	3.080e^-4	0.888	INTRON Wnt6
X	6643082	X_6643082_INS [dm3] X_6749049_INS [dm6]	A	AACAGAGA	3.081e^-4	0.888	INTRON CG14439
X	16791311	X_16791311_SNP [dm3] X_16897278_SNP [dm6]	G	C	3.083e^-4	0.888	UPSTREAM CG33252 INTERGENIC
3R	19264837	3R_19264837_DEL [dm3] 3R_23439115_DEL [dm6]	TT	T	3.084e^-4	0.888	INTRON CG4374
2L	11550949	2L_11550949_SNP [dm3] 2L_11550949_SNP [dm6]	C	T	3.093e^-4	0.888	UPSTREAM CR44494 INTERGENIC
X	10011102	X_10011102_SNP [dm3] X_10117069_SNP [dm6]	T	A	3.107e^-4	0.888	INTRON RhoU & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10991687	2R_10991687_SNP [dm3] 2R_15104182_SNP [dm6]	G	T	3.114e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	6788786	X_6788786_SNP [dm3] X_6894753_SNP [dm6]	A	C	3.116e^-4	0.888	INTERGENIC
3L	14556164	3L_14556164_SNP [dm3] 3L_14563064_SNP [dm6]	T	G	3.121e^-4	0.888	DOWNSTREAM CG34039 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1
3L	18870984	3L_18870984_INS [dm3] 3L_18877884_INS [dm6]	T	TT	3.121e^-4	0.888	UTR_3_PRIME Ugt DOWNSTREAM CG3961
2L	11654717	2L_11654717_SNP [dm3] 2L_11654717_SNP [dm6]	G	A	3.126e^-4	0.888	DOWNSTREAM CG4983 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11393904	2L_11393904_SNP [dm3] 2L_11393904_SNP [dm6]	C	T	3.126e^-4	0.888	INTERGENIC	regulatory region REDfly_CRMs
3L	14556145	3L_14556145_SNP [dm3] 3L_14563045_SNP [dm6]	A	G	3.130e^-4	0.888	DOWNSTREAM CG34039 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1
2R	16143864	2R_16143864_SNP [dm3] 2R_20256359_SNP [dm6]	A	G	3.131e^-4	0.888	INTRON Ate1	TF binding site mE1_TFBS_cad
3R	25779128	3R_25779128_SNP [dm3] 3R_29953406_SNP [dm6]	G	A	3.131e^-4	0.888	SYNONYMOUS_CODING TkR99D
2R	10998553	2R_10998553_SNP [dm3] 2R_15111048_SNP [dm6]	C	T	3.134e^-4	0.888	INTERGENIC
3L	4737859	3L_4737859_SNP [dm3] 3L_4737859_SNP [dm6]	A	G	3.138e^-4	0.888	INTRON RhoGEF64C
3L	14816333	3L_14816333_SNP [dm3] 3L_14823233_SNP [dm6]	G	A	3.139e^-4	0.888	INTRON CG17839
3L	10279903	3L_10279903_SNP [dm3] 3L_10286803_SNP [dm6]	G	T	3.150e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	16003528	3R_16003528_SNP [dm3] 3R_20177806_SNP [dm6]	G	A	3.154e^-4	0.888	INTERGENIC
2R	11530566	2R_11530566_SNP [dm3] 2R_15643061_SNP [dm6]	T	C	3.159e^-4	0.888	INTRON CG42524
2R	9147036	2R_9147036_SNP [dm3] 2R_13259531_SNP [dm6]	A	T	3.161e^-4	0.888	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3L	14835301	3L_14835301_SNP [dm3] 3L_14842201_SNP [dm6]	T	A	3.165e^-4	0.888	INTRON CG17839
3L	4768992	3L_4768992_SNP [dm3] 3L_4768992_SNP [dm6]	C	A	3.173e^-4	0.888	INTRON RhoGEF64C
2R	10998561	2R_10998561_INS [dm3] 2R_15111056_INS [dm6]	T	TCTATC	3.175e^-4	0.888	INTERGENIC
3L	712337	3L_712337_SNP [dm3] 3L_712337_SNP [dm6]	G	T	3.194e^-4	0.888	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	17347034	3R_17347034_SNP [dm3] 3R_21521312_SNP [dm6]	G	T	3.201e^-4	0.888	INTRON CG7956	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	5123133	X_5123133_SNP [dm3] X_5229100_SNP [dm6]	A	G	3.201e^-4	0.888	INTRON CG15465 & 1 other
3L	5737107	3L_5737107_SNP [dm3] 3L_5744007_SNP [dm6]	A	G	3.218e^-4	0.888	UTR_3_PRIME sif INTRON sif
2R	7961037	2R_7961037_SNP [dm3] 2R_12073532_SNP [dm6]	G	A	3.230e^-4	0.888	INTRON CG8888
X	5462709	X_5462709_DEL [dm3] X_5568676_DEL [dm6]	TT	T	3.248e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	22332606	X_22332606_SNP [dm3] X_22930770_SNP [dm6]	C	G	3.261e^-4	0.888	INTERGENIC
2L	18328109	2L_18328109_SNP [dm3] 2L_18328109_SNP [dm6]	C	G	3.263e^-4	0.888	INTRON Fas3
3L	3103926	3L_3103926_SNP [dm3] 3L_3103926_SNP [dm6]	C	T	3.265e^-4	0.888	INTRON Cht7
X	9536658	X_9536658_SNP [dm3] X_9642625_SNP [dm6]	T	A	3.266e^-4	0.888	INTRON l_1_G0232	TF binding site mE1_TFBS_inv
3L	15693061	3L_15693061_SNP [dm3] 3L_15699961_SNP [dm6]	C	T	3.280e^-4	0.888	UPSTREAM comm2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	3265694	2R_3265694_SNP [dm3] 2R_7378189_SNP [dm6]	C	T	3.283e^-4	0.888	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
3L	8745109	3L_8745109_SNP [dm3] 3L_8752009_SNP [dm6]	A	G	3.284e^-4	0.888	UPSTREAM CR44527 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	17672226	3L_17672226_SNP [dm3] 3L_17679126_SNP [dm6]	C	A	3.293e^-4	0.888	INTRON CG34251
2R	19024797	2R_19024797_SNP [dm3] 2R_23137274_SNP [dm6]	C	T	3.303e^-4	0.888	INTERGENIC
2L	4147030	2L_4147030_SNP [dm3] 2L_4147030_SNP [dm6]	C	T	3.309e^-4	0.888	INTERGENIC
X	12264143	X_12264143_SNP [dm3] X_12370110_SNP [dm6]	C	A	3.316e^-4	0.888	INTERGENIC
3R	6218645	3R_6218645_SNP [dm3] 3R_10392923_SNP [dm6]	A	G	3.319e^-4	0.888	INTRON cwo
2R	16837257	2R_16837257_SNP [dm3] 2R_20949752_SNP [dm6]	C	T	3.339e^-4	0.888	UPSTREAM CG33704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	18112916	3L_18112916_SNP [dm3] 3L_18119816_SNP [dm6]	A	C	3.354e^-4	0.888	UTR_5_PRIME CG7341 DOWNSTREAM CG32195	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15525647	2R_15525647_SNP [dm3] 2R_19638142_SNP [dm6]	T	C	3.356e^-4	0.888	DOWNSTREAM CG18367 & 2 others INTERGENIC
2L	1482138	2L_1482138_SNP [dm3] 2L_1482138_SNP [dm6]	T	A	3.360e^-4	0.888	INTERGENIC
X	18279643	X_18279643_DEL [dm3] X_18385610_DEL [dm6]	AC	G	3.374e^-4	0.888	UPSTREAM betaCOP INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9873577	3L_9873577_SNP [dm3] 3L_9880477_SNP [dm6]	T	C	3.379e^-4	0.888	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
X	3110644	X_3110644_SNP [dm3] X_3216611_SNP [dm6]	G	A	3.387e^-4	0.888	INTRON dnc
3L	1585958	3L_1585958_SNP [dm3] 3L_1585958_SNP [dm6]	C	T	3.394e^-4	0.888	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_kn mE1_TFBS_Trl
2R	10991461	2R_10991461_SNP [dm3] 2R_15103956_SNP [dm6]	C	G	3.395e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	19765108	2L_19765108_DEL [dm3] 2L_19765108_DEL [dm6]	CG	A	3.396e^-4	0.888	UPSTREAM fbp DOWNSTREAM bsh INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	25775400	3R_25775400_SNP [dm3] 3R_29949678_SNP [dm6]	C	T	3.402e^-4	0.888	INTERGENIC
2R	14418046	2R_14418046_SNP [dm3] 2R_18530541_SNP [dm6]	A	G	3.413e^-4	0.888	INTRON CG10924	TF binding site BDTNP1_TFBS_twi
X	7897437	X_7897437_SNP [dm3] X_8003404_SNP [dm6]	T	G	3.416e^-4	0.888	INTRON Tbh
3R	15130796	3R_15130796_SNP [dm3] 3R_19305074_SNP [dm6]	G	A	3.426e^-4	0.888	SYNONYMOUS_CODING Dl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	8292927	X_8292927_SNP [dm3] X_8398894_SNP [dm6]	T	C	3.428e^-4	0.888	UPSTREAM CG10555 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22936946	3R_22936946_SNP [dm3] 3R_27111224_SNP [dm6]	G	T	3.434e^-4	0.888	DOWNSTREAM CR45209 INTRON gb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9873289	3L_9873289_SNP [dm3] 3L_9880189_SNP [dm6]	C	A	3.451e^-4	0.888	INTRON CG34382	TF binding site mE1_TFBS_chinmo
2R	6929352	2R_6929352_SNP [dm3] 2R_11041847_SNP [dm6]	A	T	3.454e^-4	0.888	INTRON luna	TF binding site mE1_TFBS_cad
3L	14079483	3L_14079483_DEL [dm3] 3L_14086383_DEL [dm6]	AAAGGAACTCA...	A	3.456e^-4	0.888	DOWNSTREAM CG8100 INTERGENIC
2L	378373	2L_378373_SNP [dm3] 2L_378373_SNP [dm6]	A	T	3.457e^-4	0.888	UTR_5_PRIME al	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	8518875	3L_8518875_SNP [dm3] 3L_8525775_SNP [dm6]	A	G	3.458e^-4	0.888	UPSTREAM GstO1 INTRON foi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	11287131	3L_11287131_SNP [dm3] 3L_11294031_SNP [dm6]	C	T	3.462e^-4	0.888	SYNONYMOUS_CODING CG6175	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	16219175	2L_16219175_SNP [dm3] 2L_16219175_SNP [dm6]	C	G	3.463e^-4	0.888	INTERGENIC
2L	6463898	2L_6463898_SNP [dm3] 2L_6463898_SNP [dm6]	A	T	3.463e^-4	0.888	UTR_5_PRIME CG16947	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	7089219	X_7089219_SNP [dm3] X_7195186_SNP [dm6]	A	G	3.472e^-4	0.888	UPSTREAM CG9650 INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	5702213	X_5702213_SNP [dm3] X_5808180_SNP [dm6]	T	G	3.478e^-4	0.888	UPSTREAM Prosbeta2R1 INTERGENIC
3R	7321697	3R_7321697_SNP [dm3] 3R_11495975_SNP [dm6]	C	T	3.479e^-4	0.888	INTERGENIC
3L	12160823	3L_12160823_SNP [dm3] 3L_12167723_SNP [dm6]	G	T	3.486e^-4	0.888	INTRON Rh7
X	21458729	X_21458729_SNP [dm3] X_21587702_SNP [dm6]	C	T	3.489e^-4	0.888	INTERGENIC
2R	11251034	2R_11251034_INS [dm3] 2R_15363529_INS [dm6]	A	ATA	3.495e^-4	0.888	INTRON unc-5
3L	7611953	3L_7611953_INS [dm3] 3L_7618853_INS [dm6]	A	AA	3.496e^-4	0.888	INTRON CG33275
X	11409478	X_11409478_SNP [dm3] X_11515445_SNP [dm6]	A	G	3.508e^-4	0.888	INTRON Drak	TF binding site mE1_TFBS_Kr
3L	11236602	3L_11236602_SNP [dm3] 3L_11243502_SNP [dm6]	A	C	3.510e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	7047712	3L_7047712_SNP [dm3] 3L_7054612_SNP [dm6]	T	A	3.514e^-4	0.888	INTERGENIC
3L	712323	3L_712323_SNP [dm3] 3L_712323_SNP [dm6]	T	A	3.518e^-4	0.888	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	3079481	2R_3079481_SNP [dm3] 2R_7191976_SNP [dm6]	T	G	3.537e^-4	0.888	INTRON pk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	6952663	X_6952663_DEL [dm3] X_7058630_DEL [dm6]	CGGCG	C	3.541e^-4	0.888	INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	2863927	2L_2863927_SNP [dm3] 2L_2863927_SNP [dm6]	C	T	3.541e^-4	0.888	INTRON CG2991	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25776171	3R_25776171_SNP [dm3] 3R_29950449_SNP [dm6]	C	T	3.551e^-4	0.888	DOWNSTREAM TkR99D INTERGENIC
3L	1982891	3L_1982891_INS [dm3] 3L_1982891_INS [dm6]	G	GGGGCTG	3.553e^-4	0.888	INTERGENIC
3R	5963561	3R_5963561_SNP [dm3] 3R_10137839_SNP [dm6]	T	C	3.554e^-4	0.888	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	9504688	2L_9504688_SNP [dm3] 2L_9504688_SNP [dm6]	G	A	3.562e^-4	0.888	SYNONYMOUS_CODING CG33298
3R	25759468	3R_25759468_SNP [dm3] 3R_29933746_SNP [dm6]	C	T	3.563e^-4	0.888	SYNONYMOUS_CODING CG42557 UTR_5_PRIME CG42558 UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21141050	3R_21141050_SNP [dm3] 3R_25315328_SNP [dm6]	A	C	3.564e^-4	0.888	INTRON CG10559
2R	14341704	2R_14341704_SNP [dm3] 2R_18454199_SNP [dm6]	T	C	3.568e^-4	0.888	SYNONYMOUS_CODING CG17669	TF binding site mE1_TFBS_cad
2R	16865527	2R_16865527_SNP [dm3] 2R_20978022_SNP [dm6]	C	T	3.571e^-4	0.888	SYNONYMOUS_CODING CG15650 UPSTREAM CG9313 DOWNSTREAM CG9344
2R	16289319	2R_16289319_SNP [dm3] 2R_20401814_SNP [dm6]	C	T	3.576e^-4	0.888	INTERGENIC
3R	2867864	3R_2867864_SNP [dm3] 3R_7042142_SNP [dm6]	A	C	3.578e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16862751	2R_16862751_SNP [dm3] 2R_20975246_SNP [dm6]	T	C	3.581e^-4	0.888	UPSTREAM CG34115 INTERGENIC
3R	11459568	3R_11459568_SNP [dm3] 3R_15633846_SNP [dm6]	G	T	3.583e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_Kr
X	7624591	X_7624591_SNP [dm3] X_7730558_SNP [dm6]	G	A	3.588e^-4	0.888	NON_SYNONYMOUS_CODING CG12155	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10852647	3L_10852647_SNP [dm3] 3L_10859547_SNP [dm6]	T	A	3.590e^-4	0.888	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_kn
X	14588205	X_14588205_SNP [dm3] X_14694172_SNP [dm6]	A	G	3.592e^-4	0.888	INTRON NetB
3R	10575123	3R_10575123_SNP [dm3] 3R_14749401_SNP [dm6]	C	G	3.604e^-4	0.888	UPSTREAM jvl & 1 other INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
X	6451143	X_6451143_SNP [dm3] X_6557110_SNP [dm6]	A	C	3.608e^-4	0.888	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
2L	9443434	2L_9443434_SNP [dm3] 2L_9443434_SNP [dm6]	C	T	3.608e^-4	0.888	INTRON numb
2R	16517576	2R_16517576_SNP [dm3] 2R_20630071_SNP [dm6]	T	C	3.611e^-4	0.888	SYNONYMOUS_CODING Rcd6	TF binding site mE1_TFBS_chinmo
3L	1567838	3L_1567838_SNP [dm3] 3L_1567838_SNP [dm6]	T	C	3.615e^-4	0.888	DOWNSTREAM CG12003 INTRON CG7879	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2R	10998796	2R_10998796_SNP [dm3] 2R_15111291_SNP [dm6]	G	A	3.615e^-4	0.888	INTERGENIC
3L	1629802	3L_1629802_SNP [dm3] 3L_1629802_SNP [dm6]	C	T	3.617e^-4	0.888	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	13596717	2R_13596717_SNP [dm3] 2R_17709212_SNP [dm6]	C	T	3.617e^-4	0.888	UPSTREAM CG6424 INTRON CG6424
3L	1281145	3L_1281145_SNP [dm3] 3L_1281145_SNP [dm6]	A	G	3.618e^-4	0.888	INTRON CG32333
X	10517804	X_10517804_SNP [dm3] X_10623771_SNP [dm6]	A	G	3.624e^-4	0.888	UTR_3_PRIME CG9806 UPSTREAM Rab9Db
3L	1103303	3L_1103303_INS [dm3] 3L_1103303_INS [dm6]	A	AACCGAT	3.629e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	27860036	3R_27860036_DEL [dm3] 3R_32034314_DEL [dm6]	TTGGAGCTGCAAAAAATGAC...	T	3.631e^-4	0.888	INTERGENIC
2R	9131294	2R_9131294_SNP [dm3] 2R_13243789_SNP [dm6]	A	C	3.640e^-4	0.888	DOWNSTREAM CR45278 INTERGENIC
2R	14726419	2R_14726419_SNP [dm3] 2R_18838914_SNP [dm6]	A	G	3.642e^-4	0.888	SYNONYMOUS_CODING CG15099	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16216199	3L_16216199_SNP [dm3] 3L_16223099_SNP [dm6]	C	T	3.646e^-4	0.888	DOWNSTREAM tRNA:CR32153 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2L	3712245	2L_3712245_SNP [dm3] 2L_3712245_SNP [dm6]	G	T	3.648e^-4	0.888	UTR_3_PRIME CG31955 UPSTREAM cutlet
2R	8366292	2R_8366292_SNP [dm3] 2R_12478787_SNP [dm6]	C	T	3.649e^-4	0.888	INTRON Dh44-R2
2R	10998557	2R_10998557_SNP [dm3] 2R_15111052_SNP [dm6]	A	T	3.649e^-4	0.888	INTERGENIC
3L	1569038	3L_1569038_SNP [dm3] 3L_1569038_SNP [dm6]	A	C	3.654e^-4	0.888	UPSTREAM CG12004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2R	11322522	2R_11322522_SNP [dm3] 2R_15435017_SNP [dm6]	C	A	3.656e^-4	0.888	INTRON CG43729	TF binding site mE1_TFBS_chinmo
2R	11409484	2R_11409484_SNP [dm3] 2R_15521979_SNP [dm6]	T	C	3.656e^-4	0.888	INTRON Khc-73
2L	21911919	2L_21911919_SNP [dm3] 2L_21911919_SNP [dm6]	T	A	3.657e^-4	0.888	INTERGENIC	transposable element FlyBase
3L	9735039	3L_9735039_SNP [dm3] 3L_9741939_SNP [dm6]	A	T	3.659e^-4	0.888	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	20176231	3L_20176231_SNP [dm3] 3L_20183131_SNP [dm6]	T	A	3.660e^-4	0.888	INTRON CG42674	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16983323	3L_16983323_SNP [dm3] 3L_16990223_SNP [dm6]	A	G	3.666e^-4	0.888	INTRON Exn
2R	9940463	2R_9940463_SNP [dm3] 2R_14052958_SNP [dm6]	G	C	3.667e^-4	0.888	INTRON mam
2R	12400738	2R_12400738_SNP [dm3] 2R_16513233_SNP [dm6]	C	G	3.669e^-4	0.888	INTRON Sema-2a
3R	16710155	3R_16710155_SNP [dm3] 3R_20884433_SNP [dm6]	A	G	3.672e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13310278	3L_13310278_SNP [dm3] 3L_13317178_SNP [dm6]	C	G	3.674e^-4	0.888	INTERGENIC
3L	1187906	3L_1187906_SNP [dm3] 3L_1187906_SNP [dm6]	G	A	3.678e^-4	0.888	INTERGENIC
2R	8366265	2R_8366265_SNP [dm3] 2R_12478760_SNP [dm6]	A	C	3.679e^-4	0.888	INTRON Dh44-R2
2R	8137681	2R_8137681_SNP [dm3] 2R_12250176_SNP [dm6]	A	C	3.695e^-4	0.888	INTERGENIC
2R	7959098	2R_7959098_SNP [dm3] 2R_12071593_SNP [dm6]	T	C	3.698e^-4	0.888	INTRON CG8888
2L	9446658	2L_9446658_SNP [dm3] 2L_9446658_SNP [dm6]	A	C	3.707e^-4	0.888	INTRON numb	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	9446659	2L_9446659_SNP [dm3] 2L_9446659_SNP [dm6]	A	C	3.707e^-4	0.888	INTRON numb	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	7207197	2L_7207197_SNP [dm3] 2L_7207197_SNP [dm6]	A	G	3.711e^-4	0.888	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784	TF binding site mE1_TFBS_sens
X	2479929	X_2479929_SNP [dm3] X_2585896_SNP [dm6]	A	T	3.712e^-4	0.888	UPSTREAM wds & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	5056508	X_5056508_SNP [dm3] X_5162475_SNP [dm6]	A	G	3.713e^-4	0.888	INTRON rg & 1 other
3L	9661317	3L_9661317_SNP [dm3] 3L_9668217_SNP [dm6]	A	G	3.714e^-4	0.888	INTRON fry	TF binding site mE1_TFBS_cad
3L	712374	3L_712374_SNP [dm3] 3L_712374_SNP [dm6]	G	C	3.726e^-4	0.888	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	14154432	X_14154432_SNP [dm3] X_14260399_SNP [dm6]	A	T	3.727e^-4	0.888	UPSTREAM CG1461 INTERGENIC
2L	7207266	2L_7207266_SNP [dm3] 2L_7207266_SNP [dm6]	T	A	3.730e^-4	0.888	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784
2R	13769160	2R_13769160_SNP [dm3] 2R_17881655_SNP [dm6]	G	T	3.739e^-4	0.888	NON_SYNONYMOUS_CODING CG30110 INTRON Elk
2R	10998641	2R_10998641_SNP [dm3] 2R_15111136_SNP [dm6]	A	C	3.740e^-4	0.888	INTERGENIC
X	16341636	X_16341636_DEL [dm3] X_16447603_DEL [dm6]	TGACAGCGCGCGAGTACAA...	T	3.745e^-4	0.888	UTR_3_PRIME CG34015 UPSTREAM eIF-2alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22618986	3R_22618986_SNP [dm3] 3R_26793264_SNP [dm6]	A	T	3.747e^-4	0.888	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11340700	2R_11340700_SNP [dm3] 2R_15453195_SNP [dm6]	T	G	3.748e^-4	0.888	INTRON CG43729
2L	20593831	2L_20593831_SNP [dm3] 2L_20593831_SNP [dm6]	G	C	3.756e^-4	0.888	INTRON CR44909
2L	6120577	2L_6120577_SNP [dm3] 2L_6120577_SNP [dm6]	T	C	3.757e^-4	0.888	UPSTREAM stai DOWNSTREAM CG31642 INTRON stai
3R	26629343	3R_26629343_SNP [dm3] 3R_30803621_SNP [dm6]	A	C	3.759e^-4	0.888	INTRON wts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	16170052	2L_16170052_SNP [dm3] 2L_16170052_SNP [dm6]	T	A	3.761e^-4	0.888	INTRON Ca-alpha1D
X	19421607	X_19421607_DEL [dm3] X_19527574_DEL [dm6]	CAC	C	3.765e^-4	0.888	UPSTREAM CoRest INTRON CoRest	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1561176	3L_1561176_SNP [dm3] 3L_1561176_SNP [dm6]	C	T	3.771e^-4	0.888	SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	25765336	3R_25765336_SNP [dm3] 3R_29939614_SNP [dm6]	T	C	3.778e^-4	0.888	SYNONYMOUS_CODING CG15523
X	2310627	X_2310627_SNP [dm3] X_2416594_SNP [dm6]	T	C	3.779e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_sens
X	3110655	X_3110655_SNP [dm3] X_3216622_SNP [dm6]	A	C	3.781e^-4	0.888	INTRON dnc
3R	12082718	3R_12082718_SNP [dm3] 3R_16256996_SNP [dm6]	C	T	3.784e^-4	0.888	SYNONYMOUS_CODING tara	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18688290	3L_18688290_SNP [dm3] 3L_18695190_SNP [dm6]	C	G	3.792e^-4	0.888	INTRON CG6893
3L	18109036	3L_18109036_SNP [dm3] 3L_18115936_SNP [dm6]	A	G	3.793e^-4	0.888	UTR_3_PRIME CG32195 INTRON CG7341
2R	13557740	2R_13557740_SNP [dm3] 2R_17670235_SNP [dm6]	C	T	3.794e^-4	0.888	SYNONYMOUS_CODING CG30109 UPSTREAM CR44404 DOWNSTREAM eIF3-S8 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14587326	3L_14587326_SNP [dm3] 3L_14594226_SNP [dm6]	G	A	3.795e^-4	0.888	INTRON HGTX
2L	19715538	2L_19715538_SNP [dm3] 2L_19715538_SNP [dm6]	T	A	3.804e^-4	0.889	INTRON Lar	TF binding site BDTNP1_TFBS_sna
2R	11872600	2R_11872600_SNP [dm3] 2R_15985095_SNP [dm6]	C	A	3.814e^-4	0.89	SYNONYMOUS_CODING Strn-Mlck
2R	10938324	2R_10938324_SNP [dm3] 2R_15050819_SNP [dm6]	T	C	3.826e^-4	0.89	UPSTREAM CR43622 INTERGENIC	TF binding site mE1_TFBS_inv
X	4473277	X_4473277_INS [dm3] X_4579244_INS [dm6]	A	AA	3.828e^-4	0.89	INTRON CR32773
2L	1867640	2L_1867640_SNP [dm3] 2L_1867640_SNP [dm6]	T	G	3.830e^-4	0.89	INTRON CG31663
X	5925978	X_5925978_SNP [dm3] X_6031945_SNP [dm6]	T	A	3.834e^-4	0.89	INTERGENIC	silencer mE1_HDAC_PRE
2L	10672200	2L_10672200_SNP [dm3] 2L_10672200_SNP [dm6]	T	A	3.845e^-4	0.89	DOWNSTREAM CG31871 INTERGENIC
3L	712335	3L_712335_SNP [dm3] 3L_712335_SNP [dm6]	T	A	3.851e^-4	0.89	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	24820064	3R_24820064_SNP [dm3] 3R_28994342_SNP [dm6]	A	C	3.866e^-4	0.89	INTRON wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22936943	3R_22936943_SNP [dm3] 3R_27111221_SNP [dm6]	A	G	3.878e^-4	0.89	DOWNSTREAM CR45209 INTRON gb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13932152	2R_13932152_SNP [dm3] 2R_18044647_SNP [dm6]	T	G	3.880e^-4	0.89	SYNONYMOUS_CODING CG5770 UPSTREAM CG5773
3R	20919936	3R_20919936_SNP [dm3] 3R_25094214_SNP [dm6]	T	C	3.880e^-4	0.89	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	9881278	3R_9881278_SNP [dm3] 3R_14055556_SNP [dm6]	C	A	3.881e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	17229245	X_17229245_SNP [dm3] X_17335212_SNP [dm6]	C	T	3.882e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15757612	3L_15757612_SNP [dm3] 3L_15764512_SNP [dm6]	G	T	3.887e^-4	0.89	INTERGENIC
2L	376777	2L_376777_SNP [dm3] 2L_376777_SNP [dm6]	G	A	3.893e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	14702724	2L_14702724_SNP [dm3] 2L_14702724_SNP [dm6]	C	G	3.896e^-4	0.89	INTERGENIC
2L	6499550	2L_6499550_SNP [dm3] 2L_6499550_SNP [dm6]	C	T	3.898e^-4	0.89	SYNONYMOUS_CODING CG31637	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	10694245	3L_10694245_SNP [dm3] 3L_10701145_SNP [dm6]	G	A	3.899e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7206708	2L_7206708_SNP [dm3] 2L_7206708_SNP [dm6]	G	A	3.915e^-4	0.89	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784	TF binding site mE1_TFBS_sens
3L	12160855	3L_12160855_SNP [dm3] 3L_12167755_SNP [dm6]	T	C	3.917e^-4	0.89	INTRON Rh7
3L	1564371	3L_1564371_SNP [dm3] 3L_1564371_SNP [dm6]	A	G	3.921e^-4	0.89	INTRON CG7879
2R	14270956	2R_14270956_DEL [dm3] 2R_18383451_DEL [dm6]	ATTTTT	A	3.921e^-4	0.89	UPSTREAM IM1 & 1 other INTERGENIC
2L	1270489	2L_1270489_SNP [dm3] 2L_1270489_SNP [dm6]	G	A	3.930e^-4	0.89	INTRON robo3
2R	19297388	2R_19297388_SNP [dm3] 2R_23409865_SNP [dm6]	A	T	3.935e^-4	0.89	INTERGENIC
2R	16967555	2R_16967555_SNP [dm3] 2R_21080050_SNP [dm6]	A	G	3.941e^-4	0.89	UPSTREAM Treh INTRON Treh
2L	9426788	2L_9426788_SNP [dm3] 2L_9426788_SNP [dm6]	C	T	3.944e^-4	0.89	UTR_5_PRIME Fbp2 UPSTREAM Fbp2 DOWNSTREAM Mco1
3R	3962796	3R_3962796_SNP [dm3] 3R_8137074_SNP [dm6]	C	T	3.960e^-4	0.89	INTERGENIC
X	20813588	X_20813588_SNP [dm3] X_20942561_SNP [dm6]	A	T	3.961e^-4	0.89	INTERGENIC
3R	2952106	3R_2952106_SNP [dm3] 3R_7126384_SNP [dm6]	G	A	3.968e^-4	0.89	UTR_3_PRIME CG10098 & 1 other
3L	6100268	3L_6100268_SNP [dm3] 3L_6107168_SNP [dm6]	G	C	3.973e^-4	0.89	INTRON Ets65A	TF binding site mE1_TFBS_cad
3L	10694223	3L_10694223_SNP [dm3] 3L_10701123_SNP [dm6]	C	A	3.977e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25752385	3R_25752385_SNP [dm3] 3R_29926663_SNP [dm6]	T	G	3.988e^-4	0.89	UPSTREAM Jon99Ci & 1 other INTERGENIC
3L	7257545	3L_7257545_SNP [dm3] 3L_7264445_SNP [dm6]	T	A	3.995e^-4	0.89	UPSTREAM CG14830 INTERGENIC
2L	15917504	2L_15917504_SNP [dm3] 2L_15917504_SNP [dm6]	T	A	3.996e^-4	0.89	UTR_3_PRIME CG13244 INTRON beat-Ib
2R	11327910	2R_11327910_SNP [dm3] 2R_15440405_SNP [dm6]	T	C	3.998e^-4	0.89	INTRON CG43729
3R	16890622	3R_16890622_SNP [dm3] 3R_21064900_SNP [dm6]	G	A	4.006e^-4	0.89	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3L	7257568	3L_7257568_SNP [dm3] 3L_7264468_SNP [dm6]	G	A	4.007e^-4	0.89	UPSTREAM CG14830 INTERGENIC
2L	15090500	2L_15090500_SNP [dm3] 2L_15090500_SNP [dm6]	T	A	4.016e^-4	0.89	INTRON CG15270
2L	8447265	2L_8447265_SNP [dm3] 2L_8447265_SNP [dm6]	A	G	4.020e^-4	0.89	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	1103308	3L_1103308_SNP [dm3] 3L_1103308_SNP [dm6]	A	T	4.021e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	3752074	2L_3752074_SNP [dm3] 2L_3752074_SNP [dm6]	C	T	4.022e^-4	0.89	NON_SYNONYMOUS_CODING CG10019
3L	14797648	3L_14797648_SNP [dm3] 3L_14804548_SNP [dm6]	C	T	4.024e^-4	0.89	UPSTREAM CG17839 INTERGENIC
X	22332315	X_22332315_SNP [dm3] X_22930479_SNP [dm6]	C	A	4.031e^-4	0.89	INTERGENIC
3L	18216668	3L_18216668_SNP [dm3] 3L_18223568_SNP [dm6]	G	A	4.032e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_inv
3L	3966428	3L_3966428_SNP [dm3] 3L_3966428_SNP [dm6]	C	A	4.033e^-4	0.89	INTERGENIC
3R	12497505	3R_12497505_SNP [dm3] 3R_16671783_SNP [dm6]	C	T	4.038e^-4	0.89	INTRON Ubx
X	21458688	X_21458688_SNP [dm3] X_21587661_SNP [dm6]	A	G	4.042e^-4	0.89	INTERGENIC	transposable element FlyBase
3L	3680552	3L_3680552_SNP [dm3] 3L_3680552_SNP [dm6]	C	T	4.055e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_cad
3R	23624603	3R_23624603_SNP [dm3] 3R_27798881_SNP [dm6]	A	C	4.062e^-4	0.89	INTRON CG34353
2R	4944897	2R_4944897_SNP [dm3] 2R_9057392_SNP [dm6]	C	A	4.065e^-4	0.89	INTRON CG13743
2R	19317553	2R_19317553_SNP [dm3] 2R_23430030_SNP [dm6]	C	T	4.066e^-4	0.89	INTRON CG9815
2L	8602199	2L_8602199_SNP [dm3] 2L_8602199_SNP [dm6]	A	C	4.066e^-4	0.89	INTRON Sema-1a
3L	1585963	3L_1585963_SNP [dm3] 3L_1585963_SNP [dm6]	T	G	4.069e^-4	0.89	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_kn mE1_TFBS_Trl
X	3110645	X_3110645_SNP [dm3] X_3216612_SNP [dm6]	A	G	4.076e^-4	0.89	INTRON dnc
3R	21876295	3R_21876295_SNP [dm3] 3R_26050573_SNP [dm6]	T	C	4.088e^-4	0.89	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14154365	X_14154365_DEL [dm3] X_14260332_DEL [dm6]	AA	C	4.089e^-4	0.89	UPSTREAM CG1461 INTERGENIC
3L	12834570	3L_12834570_SNP [dm3] 3L_12841470_SNP [dm6]	G	A	4.092e^-4	0.89	INTRON CG10960
3L	7303874	3L_7303874_SNP [dm3] 3L_7310774_SNP [dm6]	A	C	4.099e^-4	0.89	INTRON unc-13-4A
2R	14647134	2R_14647134_DEL [dm3] 2R_18759629_DEL [dm6]	AG	T	4.100e^-4	0.89	SPLICE_SITE_REGION Jabba INTRON Jabba
2R	11872585	2R_11872585_SNP [dm3] 2R_15985080_SNP [dm6]	A	G	4.106e^-4	0.89	SYNONYMOUS_CODING Strn-Mlck
2R	16121600	2R_16121600_SNP [dm3] 2R_20234095_SNP [dm6]	G	A	4.108e^-4	0.89	SYNONYMOUS_CODING CG11044 UPSTREAM CG44624
3R	13451266	3R_13451266_SNP [dm3] 3R_17625544_SNP [dm6]	C	T	4.110e^-4	0.89	UPSTREAM tRNA:T:90Ca & 1 other INTRON AttD
X	6673200	X_6673200_SNP [dm3] X_6779167_SNP [dm6]	G	A	4.110e^-4	0.89	INTRON shf	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4440106	3L_4440106_SNP [dm3] 3L_4440106_SNP [dm6]	T	A	4.115e^-4	0.89	INTERGENIC
2R	14077068	2R_14077068_SNP [dm3] 2R_18189563_SNP [dm6]	G	A	4.116e^-4	0.89	UTR_3_PRIME CG14500 INTRON CG33958
2R	16864034	2R_16864034_SNP [dm3] 2R_20976529_SNP [dm6]	T	A	4.121e^-4	0.89	UPSTREAM CG9344 INTRON CG34115	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	14385310	3L_14385310_INS [dm3] 3L_14392210_INS [dm6]	T	TGCTCTTAA	4.125e^-4	0.89	INTERGENIC
3R	15312083	3R_15312083_SNP [dm3] 3R_19486361_SNP [dm6]	C	A	4.147e^-4	0.892	UPSTREAM Dys INTRON Dys
2R	11178135	2R_11178135_SNP [dm3] 2R_15290630_SNP [dm6]	T	C	4.172e^-4	0.892	INTRON Trpm
X	21063578	X_21063578_SNP [dm3] X_21192551_SNP [dm6]	G	A	4.174e^-4	0.892	UPSTREAM CG14579 INTERGENIC
3R	13360593	3R_13360593_SNP [dm3] 3R_17534871_SNP [dm6]	C	T	4.179e^-4	0.892	UTR_5_PRIME P5cr-2 UPSTREAM P5cr-2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	9131453	2R_9131453_SNP [dm3] 2R_13243948_SNP [dm6]	A	C	4.179e^-4	0.892	DOWNSTREAM CR45278 INTERGENIC
3R	14739820	3R_14739820_SNP [dm3] 3R_18914098_SNP [dm6]	T	C	4.180e^-4	0.892	UPSTREAM Xrp1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	1163795	3L_1163795_SNP [dm3] 3L_1163795_SNP [dm6]	C	A	4.181e^-4	0.892	INTRON bab2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cnc
2R	7961322	2R_7961322_SNP [dm3] 2R_12073817_SNP [dm6]	C	T	4.184e^-4	0.892	INTRON CG8888
2R	4953916	2R_4953916_SNP [dm3] 2R_9066411_SNP [dm6]	G	T	4.188e^-4	0.892	INTRON ana	regulatory region REDfly_CRMs
X	14848809	X_14848809_SNP [dm3] X_14954776_SNP [dm6]	A	T	4.189e^-4	0.892	UPSTREAM eag INTRON CG9030	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
X	16867511	X_16867511_SNP [dm3] X_16973478_SNP [dm6]	T	C	4.189e^-4	0.892	SYNONYMOUS_CODING CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10792469	3L_10792469_SNP [dm3] 3L_10799369_SNP [dm6]	G	A	4.197e^-4	0.892	INTERGENIC
3L	7141068	3L_7141068_SNP [dm3] 3L_7147968_SNP [dm6]	A	T	4.201e^-4	0.892	INTRON corn	TF binding site mE1_TFBS_cad
3L	2645491	3L_2645491_SNP [dm3] 3L_2645491_SNP [dm6]	A	T	4.202e^-4	0.892	INTRON CG1143
2R	16248235	2R_16248235_SNP [dm3] 2R_20360730_SNP [dm6]	C	G	4.208e^-4	0.892	INTERGENIC
2L	6508953	2L_6508953_SNP [dm3] 2L_6508953_SNP [dm6]	G	A	4.218e^-4	0.892	UPSTREAM CR44775 INTRON CG31637	TF binding site BDTNP1_TFBS_hb
X	18430662	X_18430662_SNP [dm3] X_18536629_SNP [dm6]	G	A	4.225e^-4	0.892	INTRON Bx
2L	12896052	2L_12896052_SNP [dm3] 2L_12896052_SNP [dm6]	T	C	4.246e^-4	0.892	INTERGENIC
3R	18031871	3R_18031871_SNP [dm3] 3R_22206149_SNP [dm6]	C	T	4.247e^-4	0.892	INTRON SKIP & 1 other
X	4191002	X_4191002_SNP [dm3] X_4296969_SNP [dm6]	G	C	4.256e^-4	0.892	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21458803	X_21458803_SNP [dm3] X_21587776_SNP [dm6]	T	C	4.256e^-4	0.892	INTERGENIC
3L	7141071	3L_7141071_SNP [dm3] 3L_7147971_SNP [dm6]	A	T	4.256e^-4	0.892	INTRON corn	TF binding site mE1_TFBS_cad
3L	1569030	3L_1569030_SNP [dm3] 3L_1569030_SNP [dm6]	G	A	4.262e^-4	0.892	UPSTREAM CG12004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	22938025	3R_22938025_SNP [dm3] 3R_27112303_SNP [dm6]	T	C	4.265e^-4	0.892	UPSTREAM CG5815 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	16863271	2R_16863271_SNP [dm3] 2R_20975766_SNP [dm6]	T	G	4.269e^-4	0.892	INTRON CG34115	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	16619032	2L_16619032_SNP [dm3] 2L_16619032_SNP [dm6]	A	C	4.269e^-4	0.892	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	27129490	3R_27129490_SNP [dm3] 3R_31303768_SNP [dm6]	A	G	4.270e^-4	0.892	SYNONYMOUS_CODING CG11340	TF binding site mE1_TFBS_sens
2L	18908808	2L_18908808_SNP [dm3] 2L_18908808_SNP [dm6]	G	T	4.271e^-4	0.892	INTERGENIC
2R	8371767	2R_8371767_SNP [dm3] 2R_12484262_SNP [dm6]	T	A	4.273e^-4	0.892	INTRON Dh44-R2
X	22330264	X_22330264_SNP [dm3] X_22928428_SNP [dm6]	G	T	4.283e^-4	0.892	INTERGENIC
X	12021044	X_12021044_INS [dm3] X_12127011_INS [dm6]	T	TT	4.296e^-4	0.892	INTRON Ten-a
X	12355375	X_12355375_SNP [dm3] X_12461342_SNP [dm6]	T	C	4.298e^-4	0.892	INTRON Rab40
X	5827053	X_5827053_DEL [dm3] X_5933020_DEL [dm6]	AACAAAAA	A	4.306e^-4	0.892	INTRON CG3726
3R	13469273	3R_13469273_SNP [dm3] 3R_17643551_SNP [dm6]	T	C	4.306e^-4	0.892	INTRON CG43175
3L	1163793	3L_1163793_SNP [dm3] 3L_1163793_SNP [dm6]	T	C	4.309e^-4	0.892	INTRON bab2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cnc
2L	10482563	2L_10482563_SNP [dm3] 2L_10482563_SNP [dm6]	C	A	4.311e^-4	0.892	NON_SYNONYMOUS_CODING RluA-2 UTR_3_PRIME RluA-2 UPSTREAM Grip75	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	8388326	3R_8388326_SNP [dm3] 3R_12562604_SNP [dm6]	C	T	4.314e^-4	0.892	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
2R	11330036	2R_11330036_SNP [dm3] 2R_15442531_SNP [dm6]	G	C	4.321e^-4	0.892	INTRON CG43729
2R	10847153	2R_10847153_SNP [dm3] 2R_14959648_SNP [dm6]	G	T	4.321e^-4	0.892	INTRON aPKC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	21917509	2L_21917509_SNP [dm3] 2L_21917509_SNP [dm6]	G	T	4.324e^-4	0.892	DOWNSTREAM CG11634 INTRON CG11634
X	12355302	X_12355302_SNP [dm3] X_12461269_SNP [dm6]	A	G	4.332e^-4	0.892	INTRON Rab40
3R	22018071	3R_22018071_SNP [dm3] 3R_26192349_SNP [dm6]	A	T	4.337e^-4	0.892	INTERGENIC
2R	11330698	2R_11330698_SNP [dm3] 2R_15443193_SNP [dm6]	G	T	4.349e^-4	0.893	INTRON CG43729
2L	20714980	2L_20714980_SNP [dm3] 2L_20714980_SNP [dm6]	G	A	4.355e^-4	0.893	UPSTREAM Hr38 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6804120	2R_6804120_SNP [dm3] 2R_10916615_SNP [dm6]	C	T	4.356e^-4	0.893	INTERGENIC
2L	16008929	2L_16008929_SNP [dm3] 2L_16008929_SNP [dm6]	C	T	4.367e^-4	0.894	INTRON beat-Ic	TF binding site mE1_TFBS_HSA
2R	7945612	2R_7945612_INS [dm3] 2R_12058107_INS [dm6]	A	AA	4.367e^-4	0.894	INTRON Drep-3
X	16867535	X_16867535_SNP [dm3] X_16973502_SNP [dm6]	T	C	4.381e^-4	0.895	SYNONYMOUS_CODING CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24416328	3R_24416328_SNP [dm3] 3R_28590606_SNP [dm6]	C	T	4.383e^-4	0.895	EXON MRE23	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	19325039	3R_19325039_SNP [dm3] 3R_23499317_SNP [dm6]	T	C	4.417e^-4	0.897	INTERGENIC
X	16855733	X_16855733_SNP [dm3] X_16961700_SNP [dm6]	G	T	4.423e^-4	0.897	INTRON CG9086	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	7452392	2L_7452392_SNP [dm3] 2L_7452392_SNP [dm6]	A	G	4.427e^-4	0.897	DOWNSTREAM Gr28a INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
2R	11409467	2R_11409467_SNP [dm3] 2R_15521962_SNP [dm6]	A	C	4.428e^-4	0.897	INTRON Khc-73
3L	1151921	3L_1151921_SNP [dm3] 3L_1151921_SNP [dm6]	T	G	4.442e^-4	0.897	INTRON bab2
3L	19495062	3L_19495062_SNP [dm3] 3L_19501962_SNP [dm6]	T	A	4.444e^-4	0.897	SYNONYMOUS_CODING CG9452
3R	4606495	3R_4606495_SNP [dm3] 3R_8780773_SNP [dm6]	T	C	4.455e^-4	0.897	UTR_5_PRIME CG33189 UPSTREAM CG33191 & 1 other DOWNSTREAM Pif1A INTRON Pif1B & 1 other	TF binding site mE1_TFBS_cad
X	5489798	X_5489798_SNP [dm3] X_5595765_SNP [dm6]	A	T	4.472e^-4	0.897	INTRON Vsx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3L	10264877	3L_10264877_SNP [dm3] 3L_10271777_SNP [dm6]	G	A	4.473e^-4	0.897	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	15838900	2R_15838900_SNP [dm3] 2R_19951395_SNP [dm6]	C	T	4.478e^-4	0.897	UTR_5_PRIME CG10822
X	15413680	X_15413680_SNP [dm3] X_15519647_SNP [dm6]	A	G	4.483e^-4	0.897	INTRON Ac13E
3L	16202260	3L_16202260_SNP [dm3] 3L_16209160_SNP [dm6]	A	C	4.484e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_cad
3L	4534212	3L_4534212_SNP [dm3] 3L_4534212_SNP [dm6]	G	T	4.486e^-4	0.897	INTRON CG11353
2R	10846296	2R_10846296_SNP [dm3] 2R_14958791_SNP [dm6]	G	A	4.488e^-4	0.897	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8458809	3L_8458809_SNP [dm3] 3L_8465709_SNP [dm6]	C	A	4.489e^-4	0.897	SYNONYMOUS_CODING Gug	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3255635	2R_3255635_SNP [dm3] 2R_7368130_SNP [dm6]	A	G	4.496e^-4	0.897	INTRON Dscam1
3L	14079700	3L_14079700_SNP [dm3] 3L_14086600_SNP [dm6]	G	T	4.499e^-4	0.897	DOWNSTREAM CG8100 INTERGENIC
2L	13704857	2L_13704857_SNP [dm3] 2L_13704857_SNP [dm6]	A	G	4.506e^-4	0.897	INTRON CG31814	TF binding site BDTNP1_TFBS_twi
2R	6606946	2R_6606946_INS [dm3] 2R_10719441_INS [dm6]	CCC	ATTTAA	4.507e^-4	0.897	INTRON stan
3R	27647596	3R_27647596_DEL [dm3] 3R_31821874_DEL [dm6]	TTA	T	4.519e^-4	0.897	INTRON RhoGAP100F
3R	15213950	3R_15213950_SNP [dm3] 3R_19388228_SNP [dm6]	G	A	4.522e^-4	0.897	DOWNSTREAM CR34285 INTRON Ino80 & 1 other	TF binding site mE1_TFBS_sens
3L	18406670	3L_18406670_SNP [dm3] 3L_18413570_SNP [dm6]	C	A	4.523e^-4	0.897	INTERGENIC
3R	18478605	3R_18478605_SNP [dm3] 3R_22652883_SNP [dm6]	T	A	4.531e^-4	0.897	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14678389	2R_14678389_SNP [dm3] 2R_18790884_SNP [dm6]	C	A	4.537e^-4	0.897	NON_SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18542213	2R_18542213_SNP [dm3] 2R_22654708_SNP [dm6]	A	C	4.543e^-4	0.897	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG30196 & 2 others INTERGENIC	TF binding site mE1_TFBS_cad
2R	9131372	2R_9131372_SNP [dm3] 2R_13243867_SNP [dm6]	T	C	4.546e^-4	0.897	DOWNSTREAM CR45278 INTERGENIC
X	9201444	X_9201444_SNP [dm3] X_9307411_SNP [dm6]	T	A	4.564e^-4	0.897	INTERGENIC
X	22332583	X_22332583_SNP [dm3] X_22930747_SNP [dm6]	C	G	4.564e^-4	0.897	INTERGENIC
2R	19513588	2R_19513588_SNP [dm3] 2R_23626065_SNP [dm6]	G	A	4.564e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15760221	3L_15760221_SNP [dm3] 3L_15767121_SNP [dm6]	G	C	4.566e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16253858	2R_16253858_SNP [dm3] 2R_20366353_SNP [dm6]	A	G	4.570e^-4	0.897	INTERGENIC
3L	9510193	3L_9510193_SNP [dm3] 3L_9517093_SNP [dm6]	C	A	4.577e^-4	0.897	INTRON CG33700
3R	25742115	3R_25742115_SNP [dm3] 3R_29916393_SNP [dm6]	A	T	4.580e^-4	0.897	INTRON trp
2L	7025296	2L_7025296_SNP [dm3] 2L_7025296_SNP [dm6]	C	A	4.585e^-4	0.897	NON_SYNONYMOUS_CODING CG31908	TF binding site mE1_TFBS_cad
3L	4152861	3L_4152861_SNP [dm3] 3L_4152861_SNP [dm6]	G	A	4.592e^-4	0.897	DOWNSTREAM CG1299 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7087058	3L_7087058_INS [dm3] 3L_7093958_INS [dm6]	A	AG	4.602e^-4	0.897	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10759040	3L_10759040_SNP [dm3] 3L_10765940_SNP [dm6]	T	C	4.616e^-4	0.897	INTERGENIC
2L	3523077	2L_3523077_DEL [dm3] 2L_3523077_DEL [dm6]	ACTAAAAAATCATATTGCTG...	TTTTAACCT	4.621e^-4	0.897	SPLICE_SITE_ACCEPTOR Sr-CIV SPLICE_SITE_DONOR Sr-CIV SPLICE_SITE_REGION Sr-CIV DOWNSTREAM CG8851 INTRON Sr-CIV
2L	1754842	2L_1754842_SNP [dm3] 2L_1754842_SNP [dm6]	A	G	4.621e^-4	0.897	DOWNSTREAM Gr22f INTERGENIC
2L	17315218	2L_17315218_SNP [dm3] 2L_17315218_SNP [dm6]	T	C	4.630e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	11872516	2R_11872516_SNP [dm3] 2R_15985011_SNP [dm6]	T	A	4.630e^-4	0.897	SYNONYMOUS_CODING Strn-Mlck
3L	21424490	3L_21424490_SNP [dm3] 3L_21431390_SNP [dm6]	A	C	4.631e^-4	0.897	SYNONYMOUS_CODING CG33288 INTRON barc	TF binding site mE1_TFBS_sens
3L	7716761	3L_7716761_SNP [dm3] 3L_7723661_SNP [dm6]	G	A	4.638e^-4	0.897	SYNONYMOUS_CODING CG7457 INTRON CG32373	TF binding site mE1_TFBS_cad
X	9621621	X_9621621_SNP [dm3] X_9727588_SNP [dm6]	G	A	4.653e^-4	0.897	DOWNSTREAM CR43498 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	743147	3L_743147_SNP [dm3] 3L_743147_SNP [dm6]	G	C	4.656e^-4	0.897	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	1568804	3L_1568804_DEL [dm3] 3L_1568804_DEL [dm6]	ACAATTA	A	4.667e^-4	0.897	UPSTREAM CG12004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Ubx
3R	25806119	3R_25806119_SNP [dm3] 3R_29980397_SNP [dm6]	C	T	4.668e^-4	0.897	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	7257564	3L_7257564_SNP [dm3] 3L_7264464_SNP [dm6]	C	T	4.668e^-4	0.897	UPSTREAM CG14830 INTERGENIC
X	16871558	X_16871558_SNP [dm3] X_16977525_SNP [dm6]	G	A	4.669e^-4	0.897	INTRON CG45002
3L	3207062	3L_3207062_SNP [dm3] 3L_3207062_SNP [dm6]	C	A	4.669e^-4	0.897	SYNONYMOUS_CODING CG32269 UTR_3_PRIME CG32270 UPSTREAM CG33160 INTRON gry	TF binding site mE1_TFBS_cad
3L	3966395	3L_3966395_SNP [dm3] 3L_3966395_SNP [dm6]	C	T	4.689e^-4	0.897	INTERGENIC
3L	4950263	3L_4950263_SNP [dm3] 3L_4950263_SNP [dm6]	C	T	4.704e^-4	0.897	INTRON Con	TF binding site mE1_TFBS_chinmo
X	21172679	X_21172679_DEL [dm3] X_21301652_DEL [dm6]	AA	A	4.705e^-4	0.897	INTRON CG1718
2R	14270955	2R_14270955_INS [dm3] 2R_18383450_INS [dm6]	A	AGTATACAAAAAGCAG...	4.710e^-4	0.897	UPSTREAM IM1 & 1 other INTERGENIC
3L	16331071	3L_16331071_SNP [dm3] 3L_16337971_SNP [dm6]	C	A	4.711e^-4	0.897	INTERGENIC
3L	18679638	3L_18679638_SNP [dm3] 3L_18686538_SNP [dm6]	T	A	4.718e^-4	0.897	UPSTREAM Cyp12c1 INTERGENIC
2R	18475324	2R_18475324_DEL [dm3] 2R_22587819_DEL [dm6]	GA	G	4.723e^-4	0.897	INTRON dnr1
2L	19569595	2L_19569595_SNP [dm3] 2L_19569595_SNP [dm6]	T	C	4.724e^-4	0.897	UPSTREAM mir-2a-2 DOWNSTREAM mir-2a-1 & 1 other INTRON spi
X	7699722	X_7699722_SNP [dm3] X_7805689_SNP [dm6]	A	C	4.727e^-4	0.897	INTERGENIC
2L	14788353	2L_14788353_SNP [dm3] 2L_14788353_SNP [dm6]	C	A	4.727e^-4	0.897	INTERGENIC
3R	25776027	3R_25776027_INS [dm3] 3R_29950305_INS [dm6]	T	TT	4.738e^-4	0.897	DOWNSTREAM TkR99D INTERGENIC
2L	9053262	2L_9053262_SNP [dm3] 2L_9053262_SNP [dm6]	T	A	4.743e^-4	0.897	INTRON CG31708
3R	22132766	3R_22132766_SNP [dm3] 3R_26307044_SNP [dm6]	G	A	4.744e^-4	0.897	INTERGENIC
3L	10689171	3L_10689171_SNP [dm3] 3L_10696071_SNP [dm6]	T	A	4.748e^-4	0.897	INTRON NijA
3R	25026972	3R_25026972_SNP [dm3] 3R_29201250_SNP [dm6]	G	A	4.749e^-4	0.897	SYNONYMOUS_CODING CG11899 DOWNSTREAM Mesh1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5775101	3L_5775101_SNP [dm3] 3L_5782001_SNP [dm6]	T	C	4.766e^-4	0.897	SYNONYMOUS_CODING PGRP-LD UTR_3_PRIME Pmi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1585964	3L_1585964_DEL [dm3] 3L_1585964_DEL [dm6]	AATT	A	4.772e^-4	0.897	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_kn mE1_TFBS_Trl
3R	10219310	3R_10219310_SNP [dm3] 3R_14393588_SNP [dm6]	G	A	4.773e^-4	0.897	SYNONYMOUS_CODING cv-c
3R	25767741	3R_25767741_SNP [dm3] 3R_29942019_SNP [dm6]	G	A	4.773e^-4	0.897	SYNONYMOUS_CODING CG15523
3R	16890626	3R_16890626_SNP [dm3] 3R_21064904_SNP [dm6]	A	T	4.775e^-4	0.897	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3R	22429023	3R_22429023_SNP [dm3] 3R_26603301_SNP [dm6]	A	C	4.777e^-4	0.897	UTR_3_PRIME scrib INTRON scrib
3L	1164293	3L_1164293_SNP [dm3] 3L_1164293_SNP [dm6]	C	T	4.780e^-4	0.897	INTRON bab2	regulatory region REDfly_CRMs
2R	13557972	2R_13557972_SNP [dm3] 2R_17670467_SNP [dm6]	T	C	4.787e^-4	0.897	SYNONYMOUS_CODING CG30109 UPSTREAM CR44404 DOWNSTREAM CG30108 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	8227006	X_8227006_DEL [dm3] X_8332973_DEL [dm6]	CCACTTCG	C	4.790e^-4	0.897	INTRON nAChRalpha3
3L	1406565	3L_1406565_SNP [dm3] 3L_1406565_SNP [dm6]	A	G	4.791e^-4	0.897	INTRON Ptp61F
3L	16897808	3L_16897808_SNP [dm3] 3L_16904708_SNP [dm6]	G	C	4.796e^-4	0.897	SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
X	8292916	X_8292916_SNP [dm3] X_8398883_SNP [dm6]	C	G	4.801e^-4	0.897	UPSTREAM CG10555 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12437452	3L_12437452_SNP [dm3] 3L_12444352_SNP [dm6]	C	T	4.801e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11338512	2R_11338512_SNP [dm3] 2R_15451007_SNP [dm6]	G	T	4.815e^-4	0.897	INTRON CG43729	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16289158	2R_16289158_DEL [dm3] 2R_20401653_DEL [dm6]	CCG	C	4.819e^-4	0.897	INTERGENIC
X	21171394	X_21171394_SNP [dm3] X_21300367_SNP [dm6]	C	A	4.820e^-4	0.897	UTR_5_PRIME CG1718
2R	12457443	2R_12457443_SNP [dm3] 2R_16569938_SNP [dm6]	T	C	4.838e^-4	0.897	SYNONYMOUS_CODING CG4945 UTR_3_PRIME CG4945 DOWNSTREAM RpS15	TF binding site mE1_TFBS_cad

By genomic position
Variant impact
Gene name

Wing_L4_Vein_Length phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results