DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.041e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.04944

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	5.0849	0.0787

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2607 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	712385	3L_712385_DEL [dm3] 3L_712385_DEL [dm6]	TA	T	7.857e^-7	0.408	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712399	3L_712399_SNP [dm3] 3L_712399_SNP [dm6]	A	T	8.226e^-7	0.408	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	14813948	3L_14813948_SNP [dm3] 3L_14820848_SNP [dm6]	G	A	9.680e^-7	0.408	INTRON CG17839
3L	712376	3L_712376_SNP [dm3] 3L_712376_SNP [dm6]	G	A	9.848e^-7	0.408	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712384	3L_712384_SNP [dm3] 3L_712384_SNP [dm6]	T	C	1.156e^-6	0.408	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	16896011	3L_16896011_SNP [dm3] 3L_16902911_SNP [dm6]	A	T	1.697e^-6	0.408	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo
3L	712348	3L_712348_SNP [dm3] 3L_712348_SNP [dm6]	G	T	1.757e^-6	0.408	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712423	3L_712423_SNP [dm3] 3L_712423_SNP [dm6]	G	C	1.919e^-6	0.408	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712388	3L_712388_DEL [dm3] 3L_712388_DEL [dm6]	AAT	A	2.072e^-6	0.408	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	15483312	3L_15483312_SNP [dm3] 3L_15490212_SNP [dm6]	A	G	2.543e^-6	0.408	INTERGENIC
2R	19127148	2R_19127148_SNP [dm3] 2R_23239625_SNP [dm6]	T	G	3.596e^-6	0.408	INTERGENIC
3L	712235	3L_712235_SNP [dm3] 3L_712235_SNP [dm6]	C	T	3.682e^-6	0.408	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	13600672	3R_13600672_SNP [dm3] 3R_17774950_SNP [dm6]	C	T	3.685e^-6	0.408	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	712337	3L_712337_SNP [dm3] 3L_712337_SNP [dm6]	G	T	3.849e^-6	0.408	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	15697740	2R_15697740_SNP [dm3] 2R_19810235_SNP [dm6]	T	G	4.135e^-6	0.408	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	712319	3L_712319_INS [dm3] 3L_712319_INS [dm6]	C	CA	4.230e^-6	0.408	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712342	3L_712342_SNP [dm3] 3L_712342_SNP [dm6]	A	T	4.230e^-6	0.408	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712455	3L_712455_SNP [dm3] 3L_712455_SNP [dm6]	C	T	4.464e^-6	0.408	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	5121979	3R_5121979_SNP [dm3] 3R_9296257_SNP [dm6]	T	G	5.232e^-6	0.408	INTRON CG8861
3L	712322	3L_712322_SNP [dm3] 3L_712322_SNP [dm6]	A	G	5.252e^-6	0.408	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	17333598	2L_17333598_SNP [dm3] 2L_17333598_SNP [dm6]	G	A	5.289e^-6	0.408	INTERGENIC
3L	20187373	3L_20187373_SNP [dm3] 3L_20194273_SNP [dm6]	G	T	5.381e^-6	0.408	INTRON CG42674
3L	15483333	3L_15483333_SNP [dm3] 3L_15490233_SNP [dm6]	T	C	5.529e^-6	0.408	INTERGENIC
3L	712335	3L_712335_SNP [dm3] 3L_712335_SNP [dm6]	T	A	5.579e^-6	0.408	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	14489486	3L_14489486_SNP [dm3] 3L_14496386_SNP [dm6]	A	C	5.815e^-6	0.408	INTRON bbg	TF binding site mE1_TFBS_cad
3L	14489495	3L_14489495_SNP [dm3] 3L_14496395_SNP [dm6]	G	A	5.815e^-6	0.408	INTRON bbg	TF binding site mE1_TFBS_cad
3L	14489497	3L_14489497_SNP [dm3] 3L_14496397_SNP [dm6]	T	A	5.996e^-6	0.408	INTRON bbg	TF binding site mE1_TFBS_cad
X	7613485	X_7613485_SNP [dm3] X_7719452_SNP [dm6]	G	A	6.247e^-6	0.408	INTERGENIC
3L	712377	3L_712377_SNP [dm3] 3L_712377_SNP [dm6]	A	C	6.493e^-6	0.408	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	15903063	2R_15903063_SNP [dm3] 2R_20015558_SNP [dm6]	A	C	6.861e^-6	0.408	DOWNSTREAM CR44629 & 1 other INTERGENIC
3L	15483419	3L_15483419_SNP [dm3] 3L_15490319_SNP [dm6]	T	A	7.024e^-6	0.408	INTERGENIC
3L	2645866	3L_2645866_SNP [dm3] 3L_2645866_SNP [dm6]	A	G	7.316e^-6	0.408	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	712226	3L_712226_SNP [dm3] 3L_712226_SNP [dm6]	C	A	7.316e^-6	0.408	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
X	20262267	X_20262267_SNP [dm3] X_20391240_SNP [dm6]	A	G	7.406e^-6	0.408	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	7.788e^-6	0.417	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	712323	3L_712323_SNP [dm3] 3L_712323_SNP [dm6]	T	A	8.335e^-6	0.434	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712374	3L_712374_SNP [dm3] 3L_712374_SNP [dm6]	G	C	9.042e^-6	0.448	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	711790	3L_711790_SNP [dm3] 3L_711790_SNP [dm6]	A	T	9.163e^-6	0.448	UTR_5_PRIME CG13896	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	14489539	3L_14489539_INS [dm3] 3L_14496439_INS [dm6]	A	ATTTTCTA	9.311e^-6	0.448	INTRON bbg
2R	13415564	2R_13415564_SNP [dm3] 2R_17528059_SNP [dm6]	G	A	9.612e^-6	0.451	SYNONYMOUS_CODING Patronin
X	17503877	X_17503877_SNP [dm3] X_17609844_SNP [dm6]	G	T	1.002e^-5	0.458	INTERGENIC
3L	1109916	3L_1109916_SNP [dm3] 3L_1109916_SNP [dm6]	C	T	1.025e^-5	0.458	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	9443434	2L_9443434_SNP [dm3] 2L_9443434_SNP [dm6]	C	T	1.070e^-5	0.464	INTRON numb
3R	27128046	3R_27128046_SNP [dm3] 3R_31302324_SNP [dm6]	C	T	1.121e^-5	0.464	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_inv
2L	9463941	2L_9463941_SNP [dm3] 2L_9463941_SNP [dm6]	T	C	1.146e^-5	0.464	UTR_3_PRIME numb DOWNSTREAM numb
3L	17624822	3L_17624822_SNP [dm3] 3L_17631722_SNP [dm6]	G	C	1.153e^-5	0.464	DOWNSTREAM CG7510 EXON CR44566
3R	3469607	3R_3469607_SNP [dm3] 3R_7643885_SNP [dm6]	C	T	1.219e^-5	0.464	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	712501	3L_712501_SNP [dm3] 3L_712501_SNP [dm6]	C	G	1.230e^-5	0.464	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	16619019	2L_16619019_SNP [dm3] 2L_16619019_SNP [dm6]	T	A	1.293e^-5	0.464	INTRON CG42389	TF binding site BDTNP1_TFBS_dl
2R	8137681	2R_8137681_SNP [dm3] 2R_12250176_SNP [dm6]	A	C	1.304e^-5	0.464	INTERGENIC
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	1.339e^-5	0.464	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13600157	3R_13600157_SNP [dm3] 3R_17774435_SNP [dm6]	T	G	1.352e^-5	0.464	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3L	2645600	3L_2645600_SNP [dm3] 3L_2645600_SNP [dm6]	A	T	1.419e^-5	0.464	INTRON CG1143	TF binding site mE1_TFBS_cad
2R	13415561	2R_13415561_SNP [dm3] 2R_17528056_SNP [dm6]	A	G	1.438e^-5	0.464	SYNONYMOUS_CODING Patronin
2R	4956241	2R_4956241_SNP [dm3] 2R_9068736_SNP [dm6]	T	G	1.445e^-5	0.464	UPSTREAM ana INTRON ana
X	17952250	X_17952250_SNP [dm3] X_18058217_SNP [dm6]	G	A	1.498e^-5	0.464	INTRON Sh
X	19421607	X_19421607_DEL [dm3] X_19527574_DEL [dm6]	CAC	C	1.547e^-5	0.464	UPSTREAM CoRest INTRON CoRest	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	11409403	X_11409403_SNP [dm3] X_11515370_SNP [dm6]	A	T	1.551e^-5	0.464	INTRON Drak	TF binding site mE1_TFBS_Kr
3R	13570329	3R_13570329_SNP [dm3] 3R_17744607_SNP [dm6]	A	C	1.582e^-5	0.464	INTRON TyrRII	TF binding site mE1_TFBS_cad
3L	7156753	3L_7156753_SNP [dm3] 3L_7163653_SNP [dm6]	G	A	1.716e^-5	0.464	INTRON Dscam2
3L	7156769	3L_7156769_SNP [dm3] 3L_7163669_SNP [dm6]	G	A	1.716e^-5	0.464	INTRON Dscam2
3L	1103424	3L_1103424_DEL [dm3] 3L_1103424_DEL [dm6]	CC	C	1.732e^-5	0.464	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	712343	3L_712343_SNP [dm3] 3L_712343_SNP [dm6]	A	C	1.742e^-5	0.464	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	16216199	3L_16216199_SNP [dm3] 3L_16223099_SNP [dm6]	C	T	1.753e^-5	0.464	DOWNSTREAM tRNA:CR32153 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
X	17952248	X_17952248_SNP [dm3] X_18058215_SNP [dm6]	C	A	1.753e^-5	0.464	INTRON Sh
2L	4421150	2L_4421150_SNP [dm3] 2L_4421150_SNP [dm6]	G	T	1.767e^-5	0.464	INTRON CG15431
3L	13272867	3L_13272867_SNP [dm3] 3L_13279767_SNP [dm6]	A	G	1.830e^-5	0.464	UPSTREAM tRNA:CR32123:Psi DOWNSTREAM caps INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13557427	3L_13557427_INS [dm3] 3L_13564327_INS [dm6]	G	TA	1.956e^-5	0.464	INTRON bru-3
3L	13557430	3L_13557430_DEL [dm3] 3L_13564330_DEL [dm6]	GTTT	G	1.956e^-5	0.464	INTRON bru-3
3L	13553816	3L_13553816_DEL [dm3] 3L_13560716_DEL [dm6]	GTCGACGTAGCGACACT...	G	1.960e^-5	0.464	INTRON bru-3
3L	14489501	3L_14489501_DEL [dm3] 3L_14496401_DEL [dm6]	TA	T	1.963e^-5	0.464	INTRON bbg	TF binding site mE1_TFBS_cad
3L	8207850	3L_8207850_SNP [dm3] 3L_8214750_SNP [dm6]	T	C	1.992e^-5	0.464	UPSTREAM CG8012 INTERGENIC
3L	7777439	3L_7777439_SNP [dm3] 3L_7784339_SNP [dm6]	C	T	2.000e^-5	0.464	INTRON CG32369
3L	711857	3L_711857_SNP [dm3] 3L_711857_SNP [dm6]	A	C	2.040e^-5	0.464	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	2669602	2L_2669602_SNP [dm3] 2L_2669602_SNP [dm6]	G	T	2.041e^-5	0.464	UPSTREAM Gr23a INTERGENIC
3L	15483234	3L_15483234_SNP [dm3] 3L_15490134_SNP [dm6]	A	C	2.047e^-5	0.464	INTERGENIC
3L	20187404	3L_20187404_SNP [dm3] 3L_20194304_SNP [dm6]	A	G	2.048e^-5	0.464	INTRON CG42674
2L	21921535	2L_21921535_SNP [dm3] 2L_21921535_SNP [dm6]	T	C	2.061e^-5	0.464	INTERGENIC
3L	4737896	3L_4737896_SNP [dm3] 3L_4737896_SNP [dm6]	G	A	2.086e^-5	0.464	INTRON RhoGEF64C
2R	4956302	2R_4956302_SNP [dm3] 2R_9068797_SNP [dm6]	C	T	2.096e^-5	0.464	UPSTREAM ana INTRON ana
3L	14376180	3L_14376180_SNP [dm3] 3L_14383080_SNP [dm6]	C	T	2.116e^-5	0.464	UTR_3_PRIME CG43120
2L	16957224	2L_16957224_SNP [dm3] 2L_16957224_SNP [dm6]	A	G	2.117e^-5	0.464	INTERGENIC
2L	15090507	2L_15090507_SNP [dm3] 2L_15090507_SNP [dm6]	T	C	2.136e^-5	0.464	INTRON CG15270
X	20262270	X_20262270_INS [dm3] X_20391243_INS [dm6]	A	ATCAATAATAATTCAA...	2.139e^-5	0.464	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3680402	3L_3680402_SNP [dm3] 3L_3680402_SNP [dm6]	T	C	2.150e^-5	0.464	INTERGENIC
X	4094020	X_4094020_SNP [dm3] X_4199987_SNP [dm6]	T	C	2.154e^-5	0.464	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	3079481	2R_3079481_SNP [dm3] 2R_7191976_SNP [dm6]	T	G	2.182e^-5	0.464	INTRON pk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12112716	2R_12112716_SNP [dm3] 2R_16225211_SNP [dm6]	A	G	2.189e^-5	0.464	UTR_5_PRIME CG15706
3L	14489459	3L_14489459_SNP [dm3] 3L_14496359_SNP [dm6]	G	C	2.224e^-5	0.464	INTRON bbg	TF binding site mE1_TFBS_cad
3L	743426	3L_743426_SNP [dm3] 3L_743426_SNP [dm6]	C	T	2.232e^-5	0.464	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	5702213	X_5702213_SNP [dm3] X_5808180_SNP [dm6]	T	G	2.264e^-5	0.464	UPSTREAM Prosbeta2R1 INTERGENIC
X	4093930	X_4093930_SNP [dm3] X_4199897_SNP [dm6]	T	C	2.304e^-5	0.464	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	7064106	X_7064106_SNP [dm3] X_7170073_SNP [dm6]	A	T	2.310e^-5	0.464	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	3997257	2L_3997257_INS [dm3] 2L_3997257_INS [dm6]	T	TGA	2.359e^-5	0.464	INTERGENIC
3L	15483232	3L_15483232_SNP [dm3] 3L_15490132_SNP [dm6]	A	T	2.375e^-5	0.464	INTERGENIC
3R	13600041	3R_13600041_SNP [dm3] 3R_17774319_SNP [dm6]	C	T	2.401e^-5	0.464	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3R	4934321	3R_4934321_SNP [dm3] 3R_9108599_SNP [dm6]	G	A	2.453e^-5	0.464	INTRON pum
3L	4737895	3L_4737895_SNP [dm3] 3L_4737895_SNP [dm6]	A	G	2.454e^-5	0.464	INTRON RhoGEF64C
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	2.464e^-5	0.464	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	18463732	X_18463732_SNP [dm3] X_18569699_SNP [dm6]	A	G	2.497e^-5	0.464	INTRON Bx	TF binding site BDTNP1_TFBS_da
2L	17333597	2L_17333597_SNP [dm3] 2L_17333597_SNP [dm6]	A	G	2.498e^-5	0.464	INTERGENIC
3R	17455708	3R_17455708_SNP [dm3] 3R_21629986_SNP [dm6]	G	T	2.544e^-5	0.468	INTRON E2f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	14555445	3L_14555445_SNP [dm3] 3L_14562345_SNP [dm6]	A	T	2.670e^-5	0.482	INTRON CG34039	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
X	10443026	X_10443026_SNP [dm3] X_10548993_SNP [dm6]	C	T	2.696e^-5	0.482	INTRON spri
3L	14929590	3L_14929590_SNP [dm3] 3L_14936490_SNP [dm6]	G	C	2.715e^-5	0.482	INTRON DCX-EMAP
3L	12055410	3L_12055410_SNP [dm3] 3L_12062310_SNP [dm6]	C	T	2.764e^-5	0.482	INTRON rols	TF binding site BDTNP1_TFBS_da
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	2.784e^-5	0.482	INTRON dnc
2L	9463855	2L_9463855_SNP [dm3] 2L_9463855_SNP [dm6]	C	T	2.785e^-5	0.482	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_kn
3L	18202542	3L_18202542_SNP [dm3] 3L_18209442_SNP [dm6]	A	T	2.824e^-5	0.482	INTERGENIC
3L	4817350	3L_4817350_SNP [dm3] 3L_4817350_SNP [dm6]	G	A	2.829e^-5	0.482	SYNONYMOUS_CODING Dhc64C
2R	3599792	2R_3599792_SNP [dm3] 2R_7712287_SNP [dm6]	A	G	2.986e^-5	0.496	UPSTREAM CG1942 DOWNSTREAM mir-4909 & 1 other INTERGENIC
X	17952247	X_17952247_SNP [dm3] X_18058214_SNP [dm6]	A	C	3.006e^-5	0.496	INTRON Sh
2L	10785598	2L_10785598_SNP [dm3] 2L_10785598_SNP [dm6]	A	T	3.010e^-5	0.496	INTRON CG31869 EXON CR44582
X	17948777	X_17948777_SNP [dm3] X_18054744_SNP [dm6]	G	A	3.033e^-5	0.496	INTRON Sh
3L	9685669	3L_9685669_SNP [dm3] 3L_9692569_SNP [dm6]	A	G	3.043e^-5	0.496	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	3077646	2R_3077646_SNP [dm3] 2R_7190141_SNP [dm6]	T	G	3.179e^-5	0.514	INTRON pk
3L	16202334	3L_16202334_SNP [dm3] 3L_16209234_SNP [dm6]	A	T	3.280e^-5	0.526	INTERGENIC	TF binding site mE1_TFBS_cad
3L	16202346	3L_16202346_SNP [dm3] 3L_16209246_SNP [dm6]	C	T	3.319e^-5	0.527	INTERGENIC	TF binding site mE1_TFBS_cad
2L	16619032	2L_16619032_SNP [dm3] 2L_16619032_SNP [dm6]	A	C	3.365e^-5	0.53	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	17333728	2L_17333728_SNP [dm3] 2L_17333728_SNP [dm6]	G	T	3.476e^-5	0.543	INTERGENIC
2R	8137696	2R_8137696_SNP [dm3] 2R_12250191_SNP [dm6]	A	T	3.579e^-5	0.545	INTERGENIC
2R	13506075	2R_13506075_SNP [dm3] 2R_17618570_SNP [dm6]	T	G	3.593e^-5	0.545	UPSTREAM CG44403 INTRON CG10936
3L	5888622	3L_5888622_SNP [dm3] 3L_5895522_SNP [dm6]	G	T	3.604e^-5	0.545	DOWNSTREAM Pole2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2660003	2L_2660003_SNP [dm3] 2L_2660003_SNP [dm6]	T	A	3.642e^-5	0.545	INTERGENIC
2R	11724908	2R_11724908_SNP [dm3] 2R_15837403_SNP [dm6]	C	T	3.663e^-5	0.545	INTRON tun	regulatory region REDfly_CRMs
X	17952263	X_17952263_SNP [dm3] X_18058230_SNP [dm6]	A	G	3.667e^-5	0.545	INTRON Sh
2R	8137710	2R_8137710_SNP [dm3] 2R_12250205_SNP [dm6]	C	A	3.712e^-5	0.545	INTERGENIC
3L	837693	3L_837693_SNP [dm3] 3L_837693_SNP [dm6]	A	C	3.719e^-5	0.545	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
X	15264242	X_15264242_SNP [dm3] X_15370209_SNP [dm6]	T	C	3.762e^-5	0.547	INTRON acj6
3L	2683655	3L_2683655_SNP [dm3] 3L_2683655_SNP [dm6]	A	G	3.803e^-5	0.548	INTRON Fife
3L	16202321	3L_16202321_SNP [dm3] 3L_16209221_SNP [dm6]	G	T	3.905e^-5	0.554	INTERGENIC	TF binding site mE1_TFBS_cad
X	7619313	X_7619313_SNP [dm3] X_7725280_SNP [dm6]	C	A	3.974e^-5	0.554	SYNONYMOUS_CODING Hira DOWNSTREAM NELF-B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8391972	3L_8391972_SNP [dm3] 3L_8398872_SNP [dm6]	A	T	4.014e^-5	0.554	INTRON CG7120
2R	4953988	2R_4953988_SNP [dm3] 2R_9066483_SNP [dm6]	T	C	4.041e^-5	0.554	INTRON ana	regulatory region REDfly_CRMs
2R	17028512	2R_17028512_SNP [dm3] 2R_21141007_SNP [dm6]	A	C	4.046e^-5	0.554	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	11525805	3L_11525805_SNP [dm3] 3L_11532705_SNP [dm6]	G	A	4.059e^-5	0.554	INTRON Mob2
2L	376777	2L_376777_SNP [dm3] 2L_376777_SNP [dm6]	G	A	4.119e^-5	0.554	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	8447278	2L_8447278_SNP [dm3] 2L_8447278_SNP [dm6]	T	G	4.128e^-5	0.554	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	3077080	2R_3077080_INS [dm3] 2R_7189575_INS [dm6]	G	GGCAG	4.188e^-5	0.554	INTRON pk
X	21160844	X_21160844_SNP [dm3] X_21289817_SNP [dm6]	G	C	4.229e^-5	0.554	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15483252	3L_15483252_SNP [dm3] 3L_15490152_SNP [dm6]	G	T	4.273e^-5	0.554	INTERGENIC
2L	9506599	2L_9506599_SNP [dm3] 2L_9506599_SNP [dm6]	T	A	4.280e^-5	0.554	INTRON CG33298
2R	8908601	2R_8908601_SNP [dm3] 2R_13021096_SNP [dm6]	T	A	4.296e^-5	0.554	INTERGENIC	TF binding site mE1_TFBS_cad
3L	14489439	3L_14489439_SNP [dm3] 3L_14496339_SNP [dm6]	A	G	4.337e^-5	0.554	INTRON bbg	TF binding site mE1_TFBS_cad
2L	7202015	2L_7202015_SNP [dm3] 2L_7202015_SNP [dm6]	C	A	4.349e^-5	0.554	INTRON CG4502
X	17952259	X_17952259_SNP [dm3] X_18058226_SNP [dm6]	T	C	4.359e^-5	0.554	INTRON Sh
3L	1100043	3L_1100043_SNP [dm3] 3L_1100043_SNP [dm6]	C	G	4.443e^-5	0.554	SYNONYMOUS_CODING bab1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	19449444	3L_19449444_SNP [dm3] 3L_19456344_SNP [dm6]	C	G	4.445e^-5	0.554	DOWNSTREAM CR45434 INTERGENIC
2L	22297776	2L_22297776_SNP [dm3] 2L_22297776_SNP [dm6]	G	A	4.462e^-5	0.554	INTERGENIC	transposable element FlyBase
2R	8479078	2R_8479078_SNP [dm3] 2R_12591573_SNP [dm6]	G	T	4.473e^-5	0.554	DOWNSTREAM CR30055 INTRON Sin3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
X	17952258	X_17952258_SNP [dm3] X_18058225_SNP [dm6]	C	A	4.511e^-5	0.554	INTRON Sh
2R	8137678	2R_8137678_SNP [dm3] 2R_12250173_SNP [dm6]	T	C	4.512e^-5	0.554	INTERGENIC
3L	9661317	3L_9661317_SNP [dm3] 3L_9668217_SNP [dm6]	A	G	4.543e^-5	0.554	INTRON fry	TF binding site mE1_TFBS_cad
3L	14919557	3L_14919557_SNP [dm3] 3L_14926457_SNP [dm6]	T	G	4.616e^-5	0.554	UTR_5_PRIME DCX-EMAP INTRON DCX-EMAP	TF binding site mE1_TFBS_cad
3R	24353994	3R_24353994_SNP [dm3] 3R_28528272_SNP [dm6]	G	A	4.674e^-5	0.554	NON_SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1108132	3L_1108132_SNP [dm3] 3L_1108132_SNP [dm6]	G	T	4.683e^-5	0.554	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	14919578	3L_14919578_SNP [dm3] 3L_14926478_SNP [dm6]	A	G	4.715e^-5	0.554	UTR_5_PRIME DCX-EMAP INTRON DCX-EMAP
3R	4342921	3R_4342921_SNP [dm3] 3R_8517199_SNP [dm6]	C	T	4.719e^-5	0.554	UPSTREAM CG11737 INTERGENIC
X	3136990	X_3136990_SNP [dm3] X_3242957_SNP [dm6]	A	G	4.728e^-5	0.554	UPSTREAM ng3 DOWNSTREAM ng1 & 1 other INTRON dnc
X	7619308	X_7619308_SNP [dm3] X_7725275_SNP [dm6]	A	G	4.732e^-5	0.554	NON_SYNONYMOUS_CODING Hira DOWNSTREAM NELF-B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14842540	X_14842540_SNP [dm3] X_14948507_SNP [dm6]	T	C	4.899e^-5	0.555	INTRON pdgy	TF binding site mE1_TFBS_HSA
3R	2867864	3R_2867864_SNP [dm3] 3R_7042142_SNP [dm6]	A	C	4.997e^-5	0.555	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2645081	3L_2645081_SNP [dm3] 3L_2645081_SNP [dm6]	A	G	5.113e^-5	0.555	UPSTREAM CG1143 INTERGENIC
3L	9685627	3L_9685627_SNP [dm3] 3L_9692527_SNP [dm6]	A	G	5.138e^-5	0.555	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	9685634	3L_9685634_SNP [dm3] 3L_9692534_SNP [dm6]	C	T	5.138e^-5	0.555	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	9686029	3L_9686029_SNP [dm3] 3L_9692929_SNP [dm6]	A	T	5.138e^-5	0.555	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
3L	9686121	3L_9686121_SNP [dm3] 3L_9693021_SNP [dm6]	T	A	5.138e^-5	0.555	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
2L	7202011	2L_7202011_SNP [dm3] 2L_7202011_SNP [dm6]	G	A	5.184e^-5	0.555	INTRON CG4502
3L	8518986	3L_8518986_SNP [dm3] 3L_8525886_SNP [dm6]	A	C	5.204e^-5	0.555	INTRON foi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	8479010	2R_8479010_SNP [dm3] 2R_12591505_SNP [dm6]	T	C	5.205e^-5	0.555	DOWNSTREAM CR30055 INTRON Sin3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
3L	10025688	3L_10025688_SNP [dm3] 3L_10032588_SNP [dm6]	A	T	5.207e^-5	0.555	INTRON dpr6
3R	10272628	3R_10272628_SNP [dm3] 3R_14446906_SNP [dm6]	C	T	5.220e^-5	0.555	INTRON cv-c
2L	16840396	2L_16840396_SNP [dm3] 2L_16840396_SNP [dm6]	T	C	5.281e^-5	0.555	UTR_3_PRIME SclA & 1 other INTRON SclA
3R	22141543	3R_22141543_SNP [dm3] 3R_26315821_SNP [dm6]	T	A	5.296e^-5	0.555	INTERGENIC
2L	7202010	2L_7202010_SNP [dm3] 2L_7202010_SNP [dm6]	C	T	5.315e^-5	0.555	INTRON CG4502
3R	21341350	3R_21341350_SNP [dm3] 3R_25515628_SNP [dm6]	G	T	5.341e^-5	0.555	UPSTREAM msi INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	21160839	X_21160839_SNP [dm3] X_21289812_SNP [dm6]	T	C	5.375e^-5	0.555	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10025690	3L_10025690_DEL [dm3] 3L_10032590_DEL [dm6]	TCAAACGTGATATGAAATAT...	A	5.395e^-5	0.555	INTRON dpr6
X	7615605	X_7615605_SNP [dm3] X_7721572_SNP [dm6]	T	C	5.402e^-5	0.555	UPSTREAM Hira INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17456726	3L_17456726_SNP [dm3] 3L_17463626_SNP [dm6]	A	G	5.474e^-5	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	9686313	3L_9686313_SNP [dm3] 3L_9693213_SNP [dm6]	C	A	5.511e^-5	0.555	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
2R	14271036	2R_14271036_SNP [dm3] 2R_18383531_SNP [dm6]	A	T	5.520e^-5	0.555	UPSTREAM IM1 & 1 other INTERGENIC
3L	11791042	3L_11791042_SNP [dm3] 3L_11797942_SNP [dm6]	A	G	5.551e^-5	0.555	SYNONYMOUS_CODING Klp68D	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15483205	3L_15483205_SNP [dm3] 3L_15490105_SNP [dm6]	G	A	5.566e^-5	0.555	INTERGENIC
3L	14389469	3L_14389469_SNP [dm3] 3L_14396369_SNP [dm6]	C	G	5.575e^-5	0.555	INTERGENIC
X	2311636	X_2311636_SNP [dm3] X_2417603_SNP [dm6]	A	T	5.599e^-5	0.555	INTERGENIC	TF binding site mE1_TFBS_sens
2R	11804667	2R_11804667_SNP [dm3] 2R_15917162_SNP [dm6]	T	G	5.620e^-5	0.555	DOWNSTREAM CR44373 INTRON sli	TF binding site mE1_TFBS_cad
3R	14351051	3R_14351051_SNP [dm3] 3R_18525329_SNP [dm6]	G	A	5.643e^-5	0.555	INTRON fru	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7726328	3L_7726328_SNP [dm3] 3L_7733228_SNP [dm6]	T	C	5.647e^-5	0.555	DOWNSTREAM Snmp2 INTRON CG32373
X	20262315	X_20262315_DEL [dm3] X_20391288_DEL [dm6]	TGATGTTTCTTAT...	T	5.676e^-5	0.555	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8479079	2R_8479079_SNP [dm3] 2R_12591574_SNP [dm6]	G	T	5.694e^-5	0.555	DOWNSTREAM CR30055 INTRON Sin3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2L	17327630	2L_17327630_SNP [dm3] 2L_17327630_SNP [dm6]	C	G	5.728e^-5	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14271043	2R_14271043_DEL [dm3] 2R_18383538_DEL [dm6]	TAATGTCTTC	T	5.770e^-5	0.555	UPSTREAM IM1 & 1 other INTERGENIC
2L	9487588	2L_9487588_SNP [dm3] 2L_9487588_SNP [dm6]	A	G	5.791e^-5	0.555	INTERGENIC
3L	16896018	3L_16896018_SNP [dm3] 3L_16902918_SNP [dm6]	G	A	5.874e^-5	0.555	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo
2L	1675714	2L_1675714_SNP [dm3] 2L_1675714_SNP [dm6]	T	A	5.916e^-5	0.555	INTRON chinmo
2L	1675720	2L_1675720_SNP [dm3] 2L_1675720_SNP [dm6]	C	G	5.916e^-5	0.555	INTRON chinmo
2R	10998493	2R_10998493_SNP [dm3] 2R_15110988_SNP [dm6]	A	G	5.919e^-5	0.555	INTERGENIC
2L	17302534	2L_17302534_SNP [dm3] 2L_17302534_SNP [dm6]	A	G	5.937e^-5	0.555	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	16216184	3L_16216184_SNP [dm3] 3L_16223084_SNP [dm6]	C	A	5.990e^-5	0.555	DOWNSTREAM tRNA:CR32153 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3R	22778961	3R_22778961_SNP [dm3] 3R_26953239_SNP [dm6]	G	A	5.990e^-5	0.555	UTR_5_PRIME CG6330 INTRON CG6330	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	12116819	2R_12116819_SNP [dm3] 2R_16229314_SNP [dm6]	A	G	6.075e^-5	0.555	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18265153	X_18265153_SNP [dm3] X_18371120_SNP [dm6]	G	T	6.079e^-5	0.555	UTR_5_PRIME CrebB UPSTREAM CrebB INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	11168307	3L_11168307_SNP [dm3] 3L_11175207_SNP [dm6]	T	A	6.095e^-5	0.555	INTRON CG14142
2L	8602199	2L_8602199_SNP [dm3] 2L_8602199_SNP [dm6]	A	C	6.108e^-5	0.555	INTRON Sema-1a
3R	10272634	3R_10272634_SNP [dm3] 3R_14446912_SNP [dm6]	T	C	6.228e^-5	0.555	INTRON cv-c
2L	22020494	2L_22020494_SNP [dm3] 2L_22020494_SNP [dm6]	A	G	6.244e^-5	0.555	DOWNSTREAM CR33987 INTRON tio	TF binding site mE1_TFBS_Trl
3L	14835275	3L_14835275_INS [dm3] 3L_14842175_INS [dm6]	T	TTGCAA	6.255e^-5	0.555	INTRON CG17839
3L	13554079	3L_13554079_SNP [dm3] 3L_13560979_SNP [dm6]	G	A	6.301e^-5	0.555	INTRON bru-3
2L	9506598	2L_9506598_SNP [dm3] 2L_9506598_SNP [dm6]	C	A	6.303e^-5	0.555	INTRON CG33298
2R	10998491	2R_10998491_SNP [dm3] 2R_15110986_SNP [dm6]	A	G	6.308e^-5	0.555	INTERGENIC
3R	12971257	3R_12971257_SNP [dm3] 3R_17145535_SNP [dm6]	A	C	6.335e^-5	0.555	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3R	12971260	3R_12971260_DEL [dm3] 3R_17145538_DEL [dm6]	AGGTAAGCATCCTA...	G	6.335e^-5	0.555	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
2L	17302565	2L_17302565_SNP [dm3] 2L_17302565_SNP [dm6]	C	A	6.342e^-5	0.555	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	13136787	X_13136787_SNP [dm3] X_13242754_SNP [dm6]	C	T	6.369e^-5	0.555	INTRON mew	TF binding site BDTNP1_TFBS_da
3R	22618992	3R_22618992_SNP [dm3] 3R_26793270_SNP [dm6]	A	G	6.405e^-5	0.555	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18475324	2R_18475324_DEL [dm3] 2R_22587819_DEL [dm6]	GA	G	6.419e^-5	0.555	INTRON dnr1
X	11409369	X_11409369_SNP [dm3] X_11515336_SNP [dm6]	T	G	6.515e^-5	0.558	INTRON Drak	TF binding site mE1_TFBS_Kr
3L	4737859	3L_4737859_SNP [dm3] 3L_4737859_SNP [dm6]	A	G	6.552e^-5	0.558	INTRON RhoGEF64C
3L	7471573	3L_7471573_SNP [dm3] 3L_7478473_SNP [dm6]	A	G	6.554e^-5	0.558	INTERGENIC
X	7612558	X_7612558_SNP [dm3] X_7718525_SNP [dm6]	A	G	6.690e^-5	0.568	UPSTREAM CG15478 INTERGENIC
3R	13682475	3R_13682475_SNP [dm3] 3R_17856753_SNP [dm6]	G	A	6.725e^-5	0.568	INTRON tinc
3L	10025750	3L_10025750_SNP [dm3] 3L_10032650_SNP [dm6]	G	A	6.764e^-5	0.568	INTRON dpr6
2R	3078696	2R_3078696_SNP [dm3] 2R_7191191_SNP [dm6]	C	T	6.789e^-5	0.568	INTRON pk	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
2R	4950454	2R_4950454_SNP [dm3] 2R_9062949_SNP [dm6]	G	A	6.929e^-5	0.571	INTRON ana	regulatory region REDfly_CRMs
2R	14271079	2R_14271079_MNP [dm3] 2R_18383574_MNP [dm6]	ACA	CAG	6.951e^-5	0.571	UPSTREAM IM1 & 2 others INTERGENIC
X	17952266	X_17952266_SNP [dm3] X_18058233_SNP [dm6]	G	T	6.952e^-5	0.571	INTRON Sh
2R	8137699	2R_8137699_SNP [dm3] 2R_12250194_SNP [dm6]	T	C	6.961e^-5	0.571	INTERGENIC
3R	18758721	3R_18758721_SNP [dm3] 3R_22932999_SNP [dm6]	G	A	6.979e^-5	0.571	INTRON klg
3R	14344614	3R_14344614_SNP [dm3] 3R_18518892_SNP [dm6]	T	A	7.071e^-5	0.576	INTRON fru
X	18464186	X_18464186_SNP [dm3] X_18570153_SNP [dm6]	C	A	7.094e^-5	0.576	INTRON Bx	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
3L	1101004	3L_1101004_SNP [dm3] 3L_1101004_SNP [dm6]	C	T	7.163e^-5	0.577	UTR_5_PRIME bab1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2R	10998501	2R_10998501_SNP [dm3] 2R_15110996_SNP [dm6]	T	G	7.208e^-5	0.577	INTERGENIC
3L	10969436	3L_10969436_SNP [dm3] 3L_10976336_SNP [dm6]	A	T	7.219e^-5	0.577	INTERGENIC	TF binding site mE1_TFBS_cad
2L	21795611	2L_21795611_SNP [dm3] 2L_21795611_SNP [dm6]	C	G	7.254e^-5	0.577	UPSTREAM CG31612 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
2L	3437649	2L_3437649_SNP [dm3] 2L_3437649_SNP [dm6]	A	T	7.265e^-5	0.577	INTERGENIC
2R	19024849	2R_19024849_SNP [dm3] 2R_23137326_SNP [dm6]	T	G	7.330e^-5	0.578	INTERGENIC
3L	15488893	3L_15488893_DEL [dm3] 3L_15495793_DEL [dm6]	TCT	T	7.333e^-5	0.578	UPSTREAM CG12355 & 1 other INTERGENIC
3L	9735039	3L_9735039_SNP [dm3] 3L_9741939_SNP [dm6]	A	T	7.407e^-5	0.581	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19404101	2R_19404101_SNP [dm3] 2R_23516578_SNP [dm6]	C	G	7.545e^-5	0.584	INTERGENIC
2R	5395530	2R_5395530_SNP [dm3] 2R_9508025_SNP [dm6]	A	C	7.574e^-5	0.584	UTR_5_PRIME brp INTRON brp	TF binding site mE1_TFBS_Trl
2R	11340150	2R_11340150_SNP [dm3] 2R_15452645_SNP [dm6]	A	T	7.580e^-5	0.584	INTRON CG43729
3L	2645611	3L_2645611_SNP [dm3] 3L_2645611_SNP [dm6]	C	A	7.599e^-5	0.584	INTRON CG1143	TF binding site mE1_TFBS_cad
X	5661124	X_5661124_SNP [dm3] X_5767091_SNP [dm6]	G	A	7.676e^-5	0.584	SYNONYMOUS_CODING CG3097 INTRON CG42699	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11666483	3R_11666483_SNP [dm3] 3R_15840761_SNP [dm6]	G	C	7.698e^-5	0.584	SYNONYMOUS_CODING spn-E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10025717	3L_10025717_DEL [dm3] 3L_10032617_DEL [dm6]	GCTTTTGTTTAGTC...	G	7.721e^-5	0.584	INTRON dpr6
X	11320928	X_11320928_MNP [dm3] X_11426895_MNP [dm6]	GCGG	TTTT	7.752e^-5	0.584	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11320932	X_11320932_INS [dm3] X_11426899_INS [dm6]	A	AAT	7.752e^-5	0.584	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8391974	3L_8391974_SNP [dm3] 3L_8398874_SNP [dm6]	G	A	7.779e^-5	0.584	INTRON CG7120
2R	13739800	2R_13739800_SNP [dm3] 2R_17852295_SNP [dm6]	G	T	7.786e^-5	0.584	UPSTREAM CG30323 INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9661340	3L_9661340_SNP [dm3] 3L_9668240_SNP [dm6]	C	G	7.844e^-5	0.586	INTRON fry	TF binding site mE1_TFBS_cad
3L	1103387	3L_1103387_SNP [dm3] 3L_1103387_SNP [dm6]	C	T	7.894e^-5	0.586	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	11320954	X_11320954_SNP [dm3] X_11426921_SNP [dm6]	A	T	7.931e^-5	0.586	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15483280	3L_15483280_SNP [dm3] 3L_15490180_SNP [dm6]	T	C	7.942e^-5	0.586	INTERGENIC
2L	17302476	2L_17302476_SNP [dm3] 2L_17302476_SNP [dm6]	A	C	8.055e^-5	0.59	INTERGENIC	TF binding site mE1_TFBS_sbb
2R	18475352	2R_18475352_SNP [dm3] 2R_22587847_SNP [dm6]	G	C	8.063e^-5	0.59	INTRON dnr1
3R	6253276	3R_6253276_SNP [dm3] 3R_10427554_SNP [dm6]	G	A	8.149e^-5	0.59	INTERGENIC
3R	24132403	3R_24132403_SNP [dm3] 3R_28306681_SNP [dm6]	A	C	8.154e^-5	0.59	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	3178769	2R_3178769_SNP [dm3] 2R_7291264_SNP [dm6]	G	A	8.193e^-5	0.59	INTRON pwn	TF binding site mE1_TFBS_cad
2L	8450856	2L_8450856_SNP [dm3] 2L_8450856_SNP [dm6]	A	C	8.197e^-5	0.59	SYNONYMOUS_CODING fu12
X	6258888	X_6258888_SNP [dm3] X_6364855_SNP [dm6]	A	C	8.208e^-5	0.59	SYNONYMOUS_CODING swa	TF binding site mE1_TFBS_chinmo
3L	14816170	3L_14816170_SNP [dm3] 3L_14823070_SNP [dm6]	A	T	8.265e^-5	0.591	INTRON CG17839
2L	5758264	2L_5758264_SNP [dm3] 2L_5758264_SNP [dm6]	A	C	8.301e^-5	0.592	INTRON CG11030	TF binding site mE1_TFBS_cad
X	9721384	X_9721384_DEL [dm3] X_9827351_DEL [dm6]	AA	A	8.332e^-5	0.592	INTRON CG32698
3R	10435085	3R_10435085_SNP [dm3] 3R_14609363_SNP [dm6]	G	T	8.400e^-5	0.592	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	8929326	3L_8929326_SNP [dm3] 3L_8936226_SNP [dm6]	C	T	8.406e^-5	0.592	NON_SYNONYMOUS_CODING CG43783 DOWNSTREAM orb2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	7619193	X_7619193_SNP [dm3] X_7725160_SNP [dm6]	C	T	8.441e^-5	0.592	SYNONYMOUS_CODING Hira DOWNSTREAM NELF-B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14815465	3L_14815465_SNP [dm3] 3L_14822365_SNP [dm6]	G	A	8.460e^-5	0.592	INTRON CG17839
2R	6795339	2R_6795339_SNP [dm3] 2R_10907834_SNP [dm6]	G	T	8.496e^-5	0.592	INTERGENIC
3R	13600203	3R_13600203_SNP [dm3] 3R_17774481_SNP [dm6]	C	T	8.610e^-5	0.593	UTR_5_PRIME CG43102 INTRON CG43102
3R	13600449	3R_13600449_SNP [dm3] 3R_17774727_SNP [dm6]	C	T	8.610e^-5	0.593	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl
2R	19522673	2R_19522673_SNP [dm3] 2R_23635150_SNP [dm6]	G	T	8.660e^-5	0.593	INTRON retn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	1103352	3L_1103352_INS [dm3] 3L_1103352_INS [dm6]	T	TGTAT	8.708e^-5	0.593	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	18930447	2L_18930447_SNP [dm3] 2L_18930447_SNP [dm6]	G	A	8.739e^-5	0.593	INTRON ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15903314	2R_15903314_SNP [dm3] 2R_20015809_SNP [dm6]	A	C	8.760e^-5	0.593	DOWNSTREAM CR44630 INTERGENIC
3R	22784279	3R_22784279_SNP [dm3] 3R_26958557_SNP [dm6]	C	T	8.855e^-5	0.593	UPSTREAM CG6330 INTERGENIC
X	19019176	X_19019176_SNP [dm3] X_19125143_SNP [dm6]	C	A	8.876e^-5	0.593	UTR_3_PRIME tgy UPSTREAM CG15882 DOWNSTREAM tgy
3R	10196368	3R_10196368_SNP [dm3] 3R_14370646_SNP [dm6]	T	A	8.947e^-5	0.593	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	7467554	3L_7467554_SNP [dm3] 3L_7474454_SNP [dm6]	G	A	8.949e^-5	0.593	INTERGENIC
3L	14816333	3L_14816333_SNP [dm3] 3L_14823233_SNP [dm6]	G	A	8.951e^-5	0.593	INTRON CG17839
2L	19822550	2L_19822550_SNP [dm3] 2L_19822550_SNP [dm6]	A	C	8.992e^-5	0.593	INTRON sick
3L	742989	3L_742989_SNP [dm3] 3L_742989_SNP [dm6]	C	A	9.004e^-5	0.593	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	14271099	2R_14271099_SNP [dm3] 2R_18383594_SNP [dm6]	G	A	9.014e^-5	0.593	UPSTREAM IM1 & 2 others INTERGENIC
X	3380974	X_3380974_SNP [dm3] X_3486941_SNP [dm6]	G	A	9.046e^-5	0.593	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3381085	X_3381085_SNP [dm3] X_3487052_SNP [dm6]	G	C	9.046e^-5	0.593	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16196724	3R_16196724_SNP [dm3] 3R_20371002_SNP [dm6]	C	G	9.051e^-5	0.593	INTERGENIC
2R	15903310	2R_15903310_DEL [dm3] 2R_20015805_DEL [dm6]	TGA	T	9.084e^-5	0.593	DOWNSTREAM CR44630 INTERGENIC
2R	8136797	2R_8136797_SNP [dm3] 2R_12249292_SNP [dm6]	G	A	9.136e^-5	0.595	INTERGENIC
2R	14269786	2R_14269786_SNP [dm3] 2R_18382281_SNP [dm6]	G	T	9.177e^-5	0.595	UPSTREAM CG43202 DOWNSTREAM IM23 INTERGENIC
X	7617605	X_7617605_SNP [dm3] X_7723572_SNP [dm6]	A	T	9.287e^-5	0.595	NON_SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	14835265	3L_14835265_SNP [dm3] 3L_14842165_SNP [dm6]	T	C	9.340e^-5	0.595	INTRON CG17839
X	18262665	X_18262665_SNP [dm3] X_18368632_SNP [dm6]	T	G	9.341e^-5	0.595	INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	5886015	3L_5886015_SNP [dm3] 3L_5892915_SNP [dm6]	C	G	9.342e^-5	0.595	INTERGENIC
2L	606452	2L_606452_SNP [dm3] 2L_606452_SNP [dm6]	C	T	9.348e^-5	0.595	DOWNSTREAM CR43648 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16289319	2R_16289319_SNP [dm3] 2R_20401814_SNP [dm6]	C	T	9.366e^-5	0.595	INTERGENIC
2R	14270956	2R_14270956_DEL [dm3] 2R_18383451_DEL [dm6]	ATTTTT	A	9.495e^-5	0.6	UPSTREAM IM1 & 1 other INTERGENIC
3L	5145560	3L_5145560_SNP [dm3] 3L_5152460_SNP [dm6]	T	A	9.504e^-5	0.6	UPSTREAM Srp54k & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
3R	5121977	3R_5121977_SNP [dm3] 3R_9296255_SNP [dm6]	A	T	9.676e^-5	0.608	INTRON CG8861
X	12772793	X_12772793_SNP [dm3] X_12878760_SNP [dm6]	T	A	9.692e^-5	0.608	INTRON Pde9
3L	4737892	3L_4737892_SNP [dm3] 3L_4737892_SNP [dm6]	T	C	9.798e^-5	0.609	INTRON RhoGEF64C
3L	7296139	3L_7296139_DEL [dm3] 3L_7303039_DEL [dm6]	AA	A	9.804e^-5	0.609	INTRON unc-13-4A
3R	20231859	3R_20231859_SNP [dm3] 3R_24406137_SNP [dm6]	A	C	9.819e^-5	0.609	INTRON nAChRalpha1
X	5646808	X_5646808_SNP [dm3] X_5752775_SNP [dm6]	C	G	9.856e^-5	0.609	DOWNSTREAM CG4078 & 1 other INTRON CG15772	TF binding site mE1_TFBS_cad
2R	16864005	2R_16864005_SNP [dm3] 2R_20976500_SNP [dm6]	A	T	9.879e^-5	0.609	UPSTREAM CG9344 INTRON CG34115	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	3078631	2R_3078631_DEL [dm3] 2R_7191126_DEL [dm6]	TACT	T	9.987e^-5	0.611	INTRON pk	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
X	7617819	X_7617819_SNP [dm3] X_7723786_SNP [dm6]	C	A	1.001e^-4	0.611	SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_HSA
X	8156849	X_8156849_SNP [dm3] X_8262816_SNP [dm6]	T	C	1.008e^-4	0.611	INTRON CG1632	TF binding site BDTNP1_TFBS_da
3L	9201306	3L_9201306_SNP [dm3] 3L_9208206_SNP [dm6]	C	T	1.012e^-4	0.611	UTR_5_PRIME Slc45-1 UPSTREAM Slc45-1
X	7993136	X_7993136_SNP [dm3] X_8099103_SNP [dm6]	C	A	1.018e^-4	0.611	INTRON CG2258	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10998512	2R_10998512_SNP [dm3] 2R_15111007_SNP [dm6]	G	T	1.020e^-4	0.611	INTERGENIC
3R	22780339	3R_22780339_SNP [dm3] 3R_26954617_SNP [dm6]	T	C	1.023e^-4	0.611	INTRON CG6330	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	21081580	X_21081580_SNP [dm3] X_21210553_SNP [dm6]	A	G	1.028e^-4	0.611	INTRON CG32521
X	4093939	X_4093939_SNP [dm3] X_4199906_SNP [dm6]	A	C	1.035e^-4	0.611	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	11277473	3L_11277473_SNP [dm3] 3L_11284373_SNP [dm6]	G	A	1.036e^-4	0.611	UPSTREAM CR45404 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	3381344	X_3381344_SNP [dm3] X_3487311_SNP [dm6]	T	C	1.041e^-4	0.611	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_sens
3L	2981701	3L_2981701_SNP [dm3] 3L_2981701_SNP [dm6]	A	G	1.041e^-4	0.611	SYNONYMOUS_CODING CG2107	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4624701	2L_4624701_SNP [dm3] 2L_4624701_SNP [dm6]	C	T	1.043e^-4	0.611	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24362223	3R_24362223_SNP [dm3] 3R_28536501_SNP [dm6]	C	T	1.049e^-4	0.611	INTRON Ppn
3R	6218645	3R_6218645_SNP [dm3] 3R_10392923_SNP [dm6]	A	G	1.050e^-4	0.611	INTRON cwo
3L	16202369	3L_16202369_SNP [dm3] 3L_16209269_SNP [dm6]	G	A	1.052e^-4	0.611	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9491503	3L_9491503_SNP [dm3] 3L_9498403_SNP [dm6]	T	C	1.054e^-4	0.611	INTRON path
3L	2645491	3L_2645491_SNP [dm3] 3L_2645491_SNP [dm6]	A	T	1.055e^-4	0.611	INTRON CG1143
3R	13682419	3R_13682419_SNP [dm3] 3R_17856697_SNP [dm6]	T	C	1.058e^-4	0.611	INTRON tinc
3R	13682437	3R_13682437_SNP [dm3] 3R_17856715_SNP [dm6]	G	C	1.058e^-4	0.611	INTRON tinc
3L	14811233	3L_14811233_SNP [dm3] 3L_14818133_SNP [dm6]	C	T	1.058e^-4	0.611	INTRON CG17839
X	2310890	X_2310890_SNP [dm3] X_2416857_SNP [dm6]	C	G	1.068e^-4	0.614	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10265312	3L_10265312_SNP [dm3] 3L_10272212_SNP [dm6]	G	A	1.076e^-4	0.614	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	22141451	3R_22141451_SNP [dm3] 3R_26315729_SNP [dm6]	C	T	1.076e^-4	0.614	INTERGENIC
3R	10436858	3R_10436858_SNP [dm3] 3R_14611136_SNP [dm6]	T	C	1.078e^-4	0.614	INTRON CG14853
2L	8447265	2L_8447265_SNP [dm3] 2L_8447265_SNP [dm6]	A	G	1.084e^-4	0.615	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	13310290	3L_13310290_SNP [dm3] 3L_13317190_SNP [dm6]	T	G	1.086e^-4	0.615	INTERGENIC
3R	9959340	3R_9959340_SNP [dm3] 3R_14133618_SNP [dm6]	C	T	1.090e^-4	0.616	INTERGENIC
3L	13272954	3L_13272954_SNP [dm3] 3L_13279854_SNP [dm6]	A	T	1.102e^-4	0.62	DOWNSTREAM caps & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	2690048	X_2690048_SNP [dm3] X_2796015_SNP [dm6]	A	C	1.105e^-4	0.62	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	7754985	2R_7754985_SNP [dm3] 2R_11867480_SNP [dm6]	G	A	1.115e^-4	0.62	DOWNSTREAM CG13185 EXON CR42532
2R	11802001	2R_11802001_SNP [dm3] 2R_15914496_SNP [dm6]	A	G	1.121e^-4	0.62	INTRON sli	TF binding site mE1_TFBS_cad
3L	5234139	3L_5234139_INS [dm3] 3L_5241039_INS [dm6]	C	CC	1.125e^-4	0.62	INTRON shep
X	17946678	X_17946678_SNP [dm3] X_18052645_SNP [dm6]	G	T	1.126e^-4	0.62	INTRON Sh	TF binding site BDTNP1_TFBS_dl
3L	3966395	3L_3966395_SNP [dm3] 3L_3966395_SNP [dm6]	C	T	1.129e^-4	0.62	INTERGENIC
3L	15483209	3L_15483209_SNP [dm3] 3L_15490109_SNP [dm6]	A	G	1.134e^-4	0.62	INTERGENIC
3R	25323777	3R_25323777_SNP [dm3] 3R_29498055_SNP [dm6]	A	G	1.137e^-4	0.62	DOWNSTREAM Trc8 INTRON CG2010	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	9463889	2L_9463889_DEL [dm3] 2L_9463889_DEL [dm6]	CA	G	1.142e^-4	0.62	UTR_3_PRIME numb DOWNSTREAM numb
3R	5129759	3R_5129759_SNP [dm3] 3R_9304037_SNP [dm6]	C	A	1.147e^-4	0.62	INTRON CG8861
X	4093952	X_4093952_SNP [dm3] X_4199919_SNP [dm6]	A	T	1.149e^-4	0.62	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	11168356	3L_11168356_INS [dm3] 3L_11175256_INS [dm6]	G	TTATA	1.153e^-4	0.62	INTRON CG14142	TF binding site mE1_TFBS_cad
X	7622623	X_7622623_SNP [dm3] X_7728590_SNP [dm6]	G	A	1.156e^-4	0.62	UPSTREAM CG12155 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9463956	2L_9463956_SNP [dm3] 2L_9463956_SNP [dm6]	C	A	1.157e^-4	0.62	UTR_3_PRIME numb DOWNSTREAM numb
2R	8133682	2R_8133682_SNP [dm3] 2R_12246177_SNP [dm6]	T	A	1.164e^-4	0.62	DOWNSTREAM CR44315 INTERGENIC
3L	10969435	3L_10969435_SNP [dm3] 3L_10976335_SNP [dm6]	A	C	1.165e^-4	0.62	INTERGENIC	TF binding site mE1_TFBS_cad
3L	1108128	3L_1108128_SNP [dm3] 3L_1108128_SNP [dm6]	G	T	1.166e^-4	0.62	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6462979	3L_6462979_SNP [dm3] 3L_6469879_SNP [dm6]	T	A	1.166e^-4	0.62	INTRON CG42747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	11168354	3L_11168354_SNP [dm3] 3L_11175254_SNP [dm6]	G	A	1.169e^-4	0.62	INTRON CG14142	TF binding site mE1_TFBS_cad
3L	7721690	3L_7721690_SNP [dm3] 3L_7728590_SNP [dm6]	T	G	1.170e^-4	0.62	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
X	5538195	X_5538195_SNP [dm3] X_5644162_SNP [dm6]	A	G	1.174e^-4	0.62	INTRON CG42492
2L	8697403	2L_8697403_SNP [dm3] 2L_8697403_SNP [dm6]	T	G	1.181e^-4	0.62	INTRON Hnf4
2R	19337409	2R_19337409_SNP [dm3] 2R_23449886_SNP [dm6]	G	A	1.182e^-4	0.62	INTRON CG43795
3L	15639667	3L_15639667_SNP [dm3] 3L_15646567_SNP [dm6]	C	G	1.186e^-4	0.62	INTRON comm3
3R	5709131	3R_5709131_SNP [dm3] 3R_9883409_SNP [dm6]	C	G	1.189e^-4	0.62	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14270955	2R_14270955_INS [dm3] 2R_18383450_INS [dm6]	A	AGTATACAAAAAGCAG...	1.189e^-4	0.62	UPSTREAM IM1 & 1 other INTERGENIC
3L	16202254	3L_16202254_SNP [dm3] 3L_16209154_SNP [dm6]	C	T	1.193e^-4	0.62	INTERGENIC	TF binding site mE1_TFBS_cad
2L	18908808	2L_18908808_SNP [dm3] 2L_18908808_SNP [dm6]	G	T	1.195e^-4	0.62	INTERGENIC
2L	11467694	2L_11467694_SNP [dm3] 2L_11467694_SNP [dm6]	C	T	1.197e^-4	0.62	INTERGENIC
2R	4176364	2R_4176364_SNP [dm3] 2R_8288859_SNP [dm6]	T	C	1.208e^-4	0.622	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	12696827	2R_12696827_SNP [dm3] 2R_16809322_SNP [dm6]	C	A	1.208e^-4	0.622	INTERGENIC
2L	9446671	2L_9446671_SNP [dm3] 2L_9446671_SNP [dm6]	A	C	1.220e^-4	0.627	INTRON numb	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
3L	14925605	3L_14925605_SNP [dm3] 3L_14932505_SNP [dm6]	T	G	1.238e^-4	0.631	INTRON DCX-EMAP
X	2554105	X_2554105_SNP [dm3] X_2660072_SNP [dm6]	T	C	1.243e^-4	0.631	SYNONYMOUS_CODING sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8447795	2L_8447795_SNP [dm3] 2L_8447795_SNP [dm6]	C	T	1.244e^-4	0.631	SYNONYMOUS_CODING U26 UTR_3_PRIME U26
2R	3079950	2R_3079950_SNP [dm3] 2R_7192445_SNP [dm6]	T	G	1.250e^-4	0.631	INTRON pk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	14954405	3L_14954405_SNP [dm3] 3L_14961305_SNP [dm6]	G	T	1.251e^-4	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10544277	2R_10544277_SNP [dm3] 2R_14656772_SNP [dm6]	C	T	1.252e^-4	0.631	DOWNSTREAM Adgf-E INTERGENIC
3L	12532444	3L_12532444_SNP [dm3] 3L_12539344_SNP [dm6]	C	T	1.255e^-4	0.631	DOWNSTREAM sowah INTRON sowah
2R	12267152	2R_12267152_SNP [dm3] 2R_16379647_SNP [dm6]	T	A	1.272e^-4	0.631	UPSTREAM CG43187 EXON CR45316 & 1 other
3L	1570824	3L_1570824_SNP [dm3] 3L_1570824_SNP [dm6]	T	C	1.272e^-4	0.631	INTRON CG12004	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	8532578	3L_8532578_SNP [dm3] 3L_8539478_SNP [dm6]	A	C	1.273e^-4	0.631	INTERGENIC
3L	10759040	3L_10759040_SNP [dm3] 3L_10765940_SNP [dm6]	T	C	1.281e^-4	0.631	INTERGENIC
3R	9306338	3R_9306338_SNP [dm3] 3R_13480616_SNP [dm6]	T	A	1.287e^-4	0.631	INTERGENIC
3L	412023	3L_412023_SNP [dm3] 3L_412023_SNP [dm6]	G	T	1.288e^-4	0.631	INTERGENIC
2L	9443469	2L_9443469_SNP [dm3] 2L_9443469_SNP [dm6]	C	T	1.289e^-4	0.631	INTRON numb
3R	8388326	3R_8388326_SNP [dm3] 3R_12562604_SNP [dm6]	C	T	1.293e^-4	0.631	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
2R	6795340	2R_6795340_SNP [dm3] 2R_10907835_SNP [dm6]	A	G	1.296e^-4	0.631	INTERGENIC
3L	8592217	3L_8592217_SNP [dm3] 3L_8599117_SNP [dm6]	G	C	1.296e^-4	0.631	UTR_3_PRIME CG43078 DOWNSTREAM Nelf-E
2R	8136809	2R_8136809_SNP [dm3] 2R_12249304_SNP [dm6]	G	T	1.297e^-4	0.631	INTERGENIC
2R	10837352	2R_10837352_SNP [dm3] 2R_14949847_SNP [dm6]	A	G	1.298e^-4	0.631	UPSTREAM aPKC INTRON aPKC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	743080	3L_743080_SNP [dm3] 3L_743080_SNP [dm6]	T	A	1.303e^-4	0.631	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	9463950	2L_9463950_SNP [dm3] 2L_9463950_SNP [dm6]	T	C	1.305e^-4	0.631	UTR_3_PRIME numb DOWNSTREAM numb
2L	21802210	2L_21802210_SNP [dm3] 2L_21802210_SNP [dm6]	G	A	1.310e^-4	0.631	INTERGENIC
2R	14271060	2R_14271060_SNP [dm3] 2R_18383555_SNP [dm6]	A	T	1.312e^-4	0.631	UPSTREAM IM1 & 1 other INTERGENIC
2R	14271062	2R_14271062_SNP [dm3] 2R_18383557_SNP [dm6]	T	G	1.312e^-4	0.631	UPSTREAM IM1 & 1 other INTERGENIC
3R	26667135	3R_26667135_SNP [dm3] 3R_30841413_SNP [dm6]	A	C	1.317e^-4	0.631	UTR_3_PRIME CG15544	TF binding site mE1_TFBS_cad
3R	27129738	3R_27129738_SNP [dm3] 3R_31304016_SNP [dm6]	G	A	1.319e^-4	0.631	SYNONYMOUS_CODING CG11340
X	11320937	X_11320937_SNP [dm3] X_11426904_SNP [dm6]	G	C	1.322e^-4	0.631	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11508729	3L_11508729_DEL [dm3] 3L_11515629_DEL [dm6]	CCC	C	1.325e^-4	0.631	INTRON CG7512
X	7622443	X_7622443_SNP [dm3] X_7728410_SNP [dm6]	G	A	1.327e^-4	0.631	UPSTREAM CG12155 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	24829701	3R_24829701_SNP [dm3] 3R_29003979_SNP [dm6]	C	G	1.329e^-4	0.631	INTRON wat
2L	20860404	2L_20860404_SNP [dm3] 2L_20860404_SNP [dm6]	C	T	1.337e^-4	0.633	INTRON CG9336
2L	9445125	2L_9445125_SNP [dm3] 2L_9445125_SNP [dm6]	T	C	1.348e^-4	0.636	INTRON numb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16517576	2R_16517576_SNP [dm3] 2R_20630071_SNP [dm6]	T	C	1.351e^-4	0.636	SYNONYMOUS_CODING Rcd6	TF binding site mE1_TFBS_chinmo
2R	13687918	2R_13687918_INS [dm3] 2R_17800413_INS [dm6]	C	CGCACAC	1.353e^-4	0.636	UTR_3_PRIME Dhit UPSTREAM grh DOWNSTREAM CR45270	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	8156894	X_8156894_INS [dm3] X_8262861_INS [dm6]	T	TTCCACGCTCCGAACCAAAT...	1.358e^-4	0.636	INTRON CG1632	TF binding site BDTNP1_TFBS_da
3L	11270074	3L_11270074_SNP [dm3] 3L_11276974_SNP [dm6]	A	G	1.364e^-4	0.637	INTERGENIC
3L	9661315	3L_9661315_SNP [dm3] 3L_9668215_SNP [dm6]	A	G	1.367e^-4	0.637	INTRON fry	TF binding site mE1_TFBS_cad
3L	7129119	3L_7129119_SNP [dm3] 3L_7136019_SNP [dm6]	T	G	1.369e^-4	0.637	INTRON melt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5758251	2L_5758251_SNP [dm3] 2L_5758251_SNP [dm6]	C	A	1.376e^-4	0.638	INTRON CG11030
3L	712066	3L_712066_SNP [dm3] 3L_712066_SNP [dm6]	G	A	1.378e^-4	0.638	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	17324045	2L_17324045_SNP [dm3] 2L_17324045_SNP [dm6]	T	C	1.389e^-4	0.639	INTERGENIC
X	5538198	X_5538198_SNP [dm3] X_5644165_SNP [dm6]	G	A	1.391e^-4	0.639	INTRON CG42492
3L	2645067	3L_2645067_SNP [dm3] 3L_2645067_SNP [dm6]	C	T	1.391e^-4	0.639	UPSTREAM CG1143 INTERGENIC
3L	6710275	3L_6710275_SNP [dm3] 3L_6717175_SNP [dm6]	G	A	1.396e^-4	0.64	INTRON ple	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	7721452	3L_7721452_SNP [dm3] 3L_7728352_SNP [dm6]	A	G	1.403e^-4	0.641	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
X	7617541	X_7617541_SNP [dm3] X_7723508_SNP [dm6]	C	A	1.407e^-4	0.641	SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	2707543	2L_2707543_SNP [dm3] 2L_2707543_SNP [dm6]	C	A	1.409e^-4	0.641	INTRON CG31690
X	12273737	X_12273737_SNP [dm3] X_12379704_SNP [dm6]	G	A	1.413e^-4	0.641	INTERGENIC
3L	10699904	3L_10699904_INS [dm3] 3L_10706804_INS [dm6]	A	AA	1.417e^-4	0.641	INTERGENIC
3R	12497505	3R_12497505_SNP [dm3] 3R_16671783_SNP [dm6]	C	T	1.434e^-4	0.646	INTRON Ubx
3R	5963561	3R_5963561_SNP [dm3] 3R_10137839_SNP [dm6]	T	C	1.437e^-4	0.646	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	21344585	3R_21344585_SNP [dm3] 3R_25518863_SNP [dm6]	G	T	1.437e^-4	0.646	INTRON msi	TF binding site mE1_TFBS_Trl
3L	19496781	3L_19496781_SNP [dm3] 3L_19503681_SNP [dm6]	G	A	1.444e^-4	0.646	START_GAINED CG9452 UTR_5_PRIME CG9452
3R	4934322	3R_4934322_SNP [dm3] 3R_9108600_SNP [dm6]	C	T	1.446e^-4	0.646	INTRON pum
3L	743033	3L_743033_SNP [dm3] 3L_743033_SNP [dm6]	C	T	1.448e^-4	0.646	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	536533	3L_536533_SNP [dm3] 3L_536533_SNP [dm6]	A	G	1.462e^-4	0.647	INTRON klar
3L	17672196	3L_17672196_SNP [dm3] 3L_17679096_SNP [dm6]	A	G	1.468e^-4	0.647	INTRON CG34251
2R	14271068	2R_14271068_DEL [dm3] 2R_18383563_DEL [dm6]	TGCTTTT	T	1.470e^-4	0.647	UPSTREAM IM1 & 2 others INTERGENIC
X	20262202	X_20262202_SNP [dm3] X_20391175_SNP [dm6]	C	A	1.471e^-4	0.647	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12510094	2R_12510094_SNP [dm3] 2R_16622589_SNP [dm6]	C	T	1.475e^-4	0.647	INTRON CG5065	TF binding site mE1_TFBS_cad
3R	4313161	3R_4313161_SNP [dm3] 3R_8487439_SNP [dm6]	G	A	1.476e^-4	0.647	INTERGENIC
3L	743084	3L_743084_INS [dm3] 3L_743084_INS [dm6]	T	TT	1.481e^-4	0.647	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	1.482e^-4	0.647	EXON CR44950
3R	24133221	3R_24133221_SNP [dm3] 3R_28307499_SNP [dm6]	C	G	1.482e^-4	0.647	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	19007092	2R_19007092_SNP [dm3] 2R_23119569_SNP [dm6]	G	T	1.485e^-4	0.647	INTERGENIC
2L	8448106	2L_8448106_SNP [dm3] 2L_8448106_SNP [dm6]	G	A	1.486e^-4	0.647	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13998264	X_13998264_SNP [dm3] X_14104231_SNP [dm6]	C	G	1.500e^-4	0.648	UPSTREAM tRNA:S4:12Ee & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18264596	X_18264596_SNP [dm3] X_18370563_SNP [dm6]	A	G	1.500e^-4	0.648	UPSTREAM CrebB & 1 other INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Trl
2L	9506593	2L_9506593_SNP [dm3] 2L_9506593_SNP [dm6]	G	T	1.505e^-4	0.648	INTRON CG33298
X	22332606	X_22332606_SNP [dm3] X_22930770_SNP [dm6]	C	G	1.506e^-4	0.648	INTERGENIC
X	20561531	X_20561531_SNP [dm3] X_20690504_SNP [dm6]	A	T	1.509e^-4	0.648	UPSTREAM run EXON CR45610	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	4187880	3R_4187880_SNP [dm3] 3R_8362158_SNP [dm6]	T	C	1.517e^-4	0.648	NON_SYNONYMOUS_CODING CG9684 UPSTREAM CG7963	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	12052968	3L_12052968_SNP [dm3] 3L_12059868_SNP [dm6]	T	G	1.522e^-4	0.648	INTRON rols	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	1103303	3L_1103303_INS [dm3] 3L_1103303_INS [dm6]	A	AACCGAT	1.530e^-4	0.648	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	4289756	3L_4289756_SNP [dm3] 3L_4289756_SNP [dm6]	C	A	1.530e^-4	0.648	SYNONYMOUS_CODING Hexo1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9940463	2R_9940463_SNP [dm3] 2R_14052958_SNP [dm6]	G	C	1.530e^-4	0.648	INTRON mam
2L	7365708	2L_7365708_SNP [dm3] 2L_7365708_SNP [dm6]	C	T	1.530e^-4	0.648	INTRON Wnt10
3L	3143873	3L_3143873_SNP [dm3] 3L_3143873_SNP [dm6]	T	A	1.532e^-4	0.648	UTR_5_PRIME CG1291 UPSTREAM CG11537	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	10085825	2L_10085825_SNP [dm3] 2L_10085825_SNP [dm6]	C	T	1.546e^-4	0.65	INTRON CG44153
2R	14271066	2R_14271066_SNP [dm3] 2R_18383561_SNP [dm6]	T	A	1.555e^-4	0.65	UPSTREAM IM1 & 1 other INTERGENIC
2R	19008611	2R_19008611_SNP [dm3] 2R_23121088_SNP [dm6]	G	A	1.556e^-4	0.65	INTERGENIC
2R	16289150	2R_16289150_SNP [dm3] 2R_20401645_SNP [dm6]	G	A	1.562e^-4	0.65	INTERGENIC
2L	5413523	2L_5413523_SNP [dm3] 2L_5413523_SNP [dm6]	A	G	1.562e^-4	0.65	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17323053	3L_17323053_SNP [dm3] 3L_17329953_SNP [dm6]	A	T	1.569e^-4	0.65	UPSTREAM Or74a INTERGENIC
X	6993925	X_6993925_SNP [dm3] X_7099892_SNP [dm6]	C	A	1.570e^-4	0.65	SYNONYMOUS_CODING CG4615	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25894705	3R_25894705_SNP [dm3] 3R_30068983_SNP [dm6]	C	G	1.571e^-4	0.65	INTRON sima
3R	6299585	3R_6299585_SNP [dm3] 3R_10473863_SNP [dm6]	G	T	1.572e^-4	0.65	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	10213841	3R_10213841_SNP [dm3] 3R_14388119_SNP [dm6]	A	T	1.573e^-4	0.65	INTERGENIC
X	3035763	X_3035763_DEL [dm3] X_3141730_DEL [dm6]	GG	G	1.578e^-4	0.65	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	18480179	3R_18480179_SNP [dm3] 3R_22654457_SNP [dm6]	G	A	1.585e^-4	0.65	INTRON CG45058
3R	25912708	3R_25912708_SNP [dm3] 3R_30086986_SNP [dm6]	C	A	1.595e^-4	0.65	INTRON sima
3L	9319410	3L_9319410_SNP [dm3] 3L_9326310_SNP [dm6]	T	A	1.595e^-4	0.65	INTERGENIC
3R	15096088	3R_15096088_SNP [dm3] 3R_19270366_SNP [dm6]	T	A	1.597e^-4	0.65	INTERGENIC
2R	7107070	2R_7107070_SNP [dm3] 2R_11219565_SNP [dm6]	T	C	1.598e^-4	0.65	UTR_5_PRIME Syx6 UPSTREAM Syx6 & 1 other INTRON CG9084	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	17672015	3L_17672015_SNP [dm3] 3L_17678915_SNP [dm6]	A	T	1.601e^-4	0.65	INTRON CG34251
2R	12389779	2R_12389779_SNP [dm3] 2R_16502274_SNP [dm6]	A	G	1.606e^-4	0.65	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	6643082	X_6643082_INS [dm3] X_6749049_INS [dm6]	A	AACAGAGA	1.607e^-4	0.65	INTRON CG14439
X	12665890	X_12665890_SNP [dm3] X_12771857_SNP [dm6]	C	G	1.612e^-4	0.65	UTR_3_PRIME CG3812 & 1 other DOWNSTREAM CG3812
3L	4841343	3L_4841343_SNP [dm3] 3L_4841343_SNP [dm6]	A	C	1.621e^-4	0.65	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	13887805	3L_13887805_SNP [dm3] 3L_13894705_SNP [dm6]	C	T	1.625e^-4	0.65	INTRON dysc
2R	11683570	2R_11683570_SNP [dm3] 2R_15796065_SNP [dm6]	T	G	1.626e^-4	0.65	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8137206	2R_8137206_SNP [dm3] 2R_12249701_SNP [dm6]	T	C	1.628e^-4	0.65	INTERGENIC
X	7620280	X_7620280_SNP [dm3] X_7726247_SNP [dm6]	G	T	1.631e^-4	0.65	UTR_3_PRIME NELF-B DOWNSTREAM Hira	TF binding site mE1_TFBS_chinmo
2R	20191493	2R_20191493_SNP [dm3] 2R_24303970_SNP [dm6]	G	A	1.632e^-4	0.65	INTERGENIC	regulatory region REDfly_CRMs
2L	7025296	2L_7025296_SNP [dm3] 2L_7025296_SNP [dm6]	C	A	1.634e^-4	0.65	NON_SYNONYMOUS_CODING CG31908	TF binding site mE1_TFBS_cad
3L	837739	3L_837739_INS [dm3] 3L_837739_INS [dm6]	T	TA	1.636e^-4	0.65	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
X	5661593	X_5661593_SNP [dm3] X_5767560_SNP [dm6]	C	T	1.637e^-4	0.65	SYNONYMOUS_CODING CG3097 INTRON CG42699	TF binding site mE1_TFBS_sens
2L	10482563	2L_10482563_SNP [dm3] 2L_10482563_SNP [dm6]	C	A	1.656e^-4	0.657	NON_SYNONYMOUS_CODING RluA-2 UTR_3_PRIME RluA-2 UPSTREAM Grip75	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	21171393	X_21171393_SNP [dm3] X_21300366_SNP [dm6]	G	C	1.669e^-4	0.659	UTR_5_PRIME CG1718
2L	9111772	2L_9111772_SNP [dm3] 2L_9111772_SNP [dm6]	G	C	1.669e^-4	0.659	UPSTREAM Or30a INTERGENIC
2L	3291545	2L_3291545_SNP [dm3] 2L_3291545_SNP [dm6]	G	T	1.692e^-4	0.665	SYNONYMOUS_CODING CG9664 UTR_3_PRIME CG9664	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7836670	3L_7836670_SNP [dm3] 3L_7843570_SNP [dm6]	T	C	1.693e^-4	0.665	INTRON Pdp1	regulatory region REDfly_CRMs
3L	3699414	3L_3699414_SNP [dm3] 3L_3699414_SNP [dm6]	C	T	1.694e^-4	0.665	INTERGENIC
3L	12055408	3L_12055408_SNP [dm3] 3L_12062308_SNP [dm6]	G	A	1.711e^-4	0.666	INTRON rols	TF binding site BDTNP1_TFBS_da
3L	4842259	3L_4842259_SNP [dm3] 3L_4842259_SNP [dm6]	T	C	1.715e^-4	0.666	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	11320946	X_11320946_SNP [dm3] X_11426913_SNP [dm6]	T	G	1.716e^-4	0.666	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16239804	2L_16239804_SNP [dm3] 2L_16239804_SNP [dm6]	C	T	1.717e^-4	0.666	INTRON CG42817
3L	17193388	3L_17193388_SNP [dm3] 3L_17200288_SNP [dm6]	T	A	1.722e^-4	0.666	INTRON Rbp6
X	11321111	X_11321111_SNP [dm3] X_11427078_SNP [dm6]	C	G	1.724e^-4	0.666	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17353856	3R_17353856_SNP [dm3] 3R_21528134_SNP [dm6]	C	T	1.726e^-4	0.666	UTR_3_PRIME CG7956 DOWNSTREAM CG7956	TF binding site BDTNP1_TFBS_slp1
3L	15614495	3L_15614495_SNP [dm3] 3L_15621395_SNP [dm6]	C	A	1.731e^-4	0.666	NON_SYNONYMOUS_CODING CG7372 INTRON comm3	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	14955046	3L_14955046_SNP [dm3] 3L_14961946_SNP [dm6]	T	C	1.732e^-4	0.666	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25588806	3R_25588806_SNP [dm3] 3R_29763084_SNP [dm6]	A	G	1.741e^-4	0.666	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1103308	3L_1103308_SNP [dm3] 3L_1103308_SNP [dm6]	A	T	1.742e^-4	0.666	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	5569344	3L_5569344_SNP [dm3] 3L_5576244_SNP [dm6]	A	G	1.744e^-4	0.666	INTRON Msr-110
3R	4349280	3R_4349280_SNP [dm3] 3R_8523558_SNP [dm6]	T	C	1.745e^-4	0.666	UPSTREAM CG31259 DOWNSTREAM CG31454 INTERGENIC
2L	502378	2L_502378_INS [dm3] 2L_502378_INS [dm6]	A	ATTGTA	1.756e^-4	0.668	INTRON ush
3L	312104	3L_312104_SNP [dm3] 3L_312104_SNP [dm6]	C	T	1.758e^-4	0.668	UPSTREAM fwd INTRON fwd	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	11177864	2R_11177864_SNP [dm3] 2R_15290359_SNP [dm6]	A	G	1.772e^-4	0.668	INTRON Trpm
3L	15610573	3L_15610573_SNP [dm3] 3L_15617473_SNP [dm6]	G	A	1.775e^-4	0.668	INTRON comm3
3L	15610581	3L_15610581_DEL [dm3] 3L_15617481_DEL [dm6]	GGCC	TT	1.775e^-4	0.668	INTRON comm3
3L	15610600	3L_15610600_SNP [dm3] 3L_15617500_SNP [dm6]	A	C	1.775e^-4	0.668	INTRON comm3
3L	837721	3L_837721_SNP [dm3] 3L_837721_SNP [dm6]	C	G	1.777e^-4	0.668	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2R	11573868	2R_11573868_SNP [dm3] 2R_15686363_SNP [dm6]	C	T	1.779e^-4	0.668	SYNONYMOUS_CODING Ranbp11 UPSTREAM CG30082	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3R	5129982	3R_5129982_SNP [dm3] 3R_9304260_SNP [dm6]	C	G	1.788e^-4	0.668	INTRON CG8861
3L	7721501	3L_7721501_SNP [dm3] 3L_7728401_SNP [dm6]	T	G	1.788e^-4	0.668	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
2L	6499760	2L_6499760_SNP [dm3] 2L_6499760_SNP [dm6]	G	A	1.791e^-4	0.668	SYNONYMOUS_CODING CG31637	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	5137887	3R_5137887_SNP [dm3] 3R_9312165_SNP [dm6]	A	G	1.793e^-4	0.668	INTRON CG8861
3L	2646310	3L_2646310_SNP [dm3] 3L_2646310_SNP [dm6]	T	C	1.798e^-4	0.669	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7206708	2L_7206708_SNP [dm3] 2L_7206708_SNP [dm6]	G	A	1.802e^-4	0.669	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784	TF binding site mE1_TFBS_sens
3L	15308481	3L_15308481_SNP [dm3] 3L_15315381_SNP [dm6]	G	A	1.817e^-4	0.672	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	21779550	2L_21779550_INS [dm3] 2L_21779550_INS [dm6]	C	CTATTCTTATTATC...	1.820e^-4	0.672	INTRON CG31612
3R	22242029	3R_22242029_SNP [dm3] 3R_26416307_SNP [dm6]	G	A	1.822e^-4	0.672	DOWNSTREAM CG5432 INTERGENIC
2R	15428091	2R_15428091_SNP [dm3] 2R_19540586_SNP [dm6]	C	A	1.833e^-4	0.675	INTRON sm
3L	1103402	3L_1103402_SNP [dm3] 3L_1103402_SNP [dm6]	A	T	1.836e^-4	0.675	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	8138196	2R_8138196_SNP [dm3] 2R_12250691_SNP [dm6]	A	G	1.841e^-4	0.675	INTERGENIC
2R	3492549	2R_3492549_SNP [dm3] 2R_7605044_SNP [dm6]	C	A	1.844e^-4	0.675	INTRON CG1358	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22883797	3L_22883797_SNP [dm3] 3L_22890697_SNP [dm6]	A	G	1.848e^-4	0.675	INTRON slif	transposable element FlyBase
X	20262200	X_20262200_SNP [dm3] X_20391173_SNP [dm6]	G	A	1.855e^-4	0.675	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9457779	2R_9457779_SNP [dm3] 2R_13570274_SNP [dm6]	A	T	1.861e^-4	0.675	DOWNSTREAM CG42807 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
X	7617550	X_7617550_SNP [dm3] X_7723517_SNP [dm6]	T	C	1.862e^-4	0.675	SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	7835523	3L_7835523_SNP [dm3] 3L_7842423_SNP [dm6]	C	G	1.864e^-4	0.675	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	12665748	X_12665748_SNP [dm3] X_12771715_SNP [dm6]	C	T	1.864e^-4	0.675	UTR_3_PRIME CG3812 DOWNSTREAM CG32647 & 1 other
3L	742992	3L_742992_DEL [dm3] 3L_742992_DEL [dm6]	ATGGTTTTTGATAACTAA...	A	1.875e^-4	0.675	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	13682812	3R_13682812_SNP [dm3] 3R_17857090_SNP [dm6]	G	C	1.877e^-4	0.675	INTRON tinc
X	14842374	X_14842374_INS [dm3] X_14948341_INS [dm6]	A	ACATAGTCCATAAGGTA...	1.882e^-4	0.675	INTRON pdgy	TF binding site mE1_TFBS_HSA
2R	13557740	2R_13557740_SNP [dm3] 2R_17670235_SNP [dm6]	C	T	1.883e^-4	0.675	SYNONYMOUS_CODING CG30109 UPSTREAM CR44404 DOWNSTREAM eIF3-S8 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9446658	2L_9446658_SNP [dm3] 2L_9446658_SNP [dm6]	A	C	1.886e^-4	0.675	INTRON numb	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	9446659	2L_9446659_SNP [dm3] 2L_9446659_SNP [dm6]	A	C	1.886e^-4	0.675	INTRON numb	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
3R	22768774	3R_22768774_SNP [dm3] 3R_26943052_SNP [dm6]	T	C	1.891e^-4	0.675	SYNONYMOUS_CODING sda	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7467600	3L_7467600_SNP [dm3] 3L_7474500_SNP [dm6]	T	C	1.904e^-4	0.677	INTERGENIC
X	11320947	X_11320947_SNP [dm3] X_11426914_SNP [dm6]	T	C	1.907e^-4	0.677	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15413677	X_15413677_SNP [dm3] X_15519644_SNP [dm6]	C	G	1.911e^-4	0.677	INTRON Ac13E
X	892036	X_892036_SNP [dm3] X_998003_SNP [dm6]	T	A	1.912e^-4	0.677	INTERGENIC
X	9536658	X_9536658_SNP [dm3] X_9642625_SNP [dm6]	T	A	1.922e^-4	0.677	INTRON l_1_G0232	TF binding site mE1_TFBS_inv
3L	17217720	3L_17217720_SNP [dm3] 3L_17224620_SNP [dm6]	A	G	1.923e^-4	0.677	INTRON Rbp6
2R	16862751	2R_16862751_SNP [dm3] 2R_20975246_SNP [dm6]	T	C	1.940e^-4	0.677	UPSTREAM CG34115 INTERGENIC
X	4208104	X_4208104_SNP [dm3] X_4314071_SNP [dm6]	A	G	1.943e^-4	0.677	DOWNSTREAM mei-9 INTRON CR44957
3R	21405169	3R_21405169_SNP [dm3] 3R_25579447_SNP [dm6]	C	T	1.945e^-4	0.677	INTRON msi
3R	24133165	3R_24133165_SNP [dm3] 3R_28307443_SNP [dm6]	A	G	1.947e^-4	0.677	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	13556727	2R_13556727_SNP [dm3] 2R_17669222_SNP [dm6]	A	T	1.948e^-4	0.677	UTR_3_PRIME eIF3-S8 UPSTREAM CG30108 & 1 other DOWNSTREAM eIF3-S8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
3L	391184	3L_391184_SNP [dm3] 3L_391184_SNP [dm6]	C	A	1.950e^-4	0.677	DOWNSTREAM CR45378 INTRON trh
2R	20946369	2R_20946369_SNP [dm3] 2R_25058846_SNP [dm6]	C	T	1.952e^-4	0.677	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3L	13549841	3L_13549841_SNP [dm3] 3L_13556741_SNP [dm6]	A	G	1.953e^-4	0.677	INTRON bru-3
2L	9103236	2L_9103236_SNP [dm3] 2L_9103236_SNP [dm6]	C	T	1.953e^-4	0.677	INTERGENIC
3L	20080617	3L_20080617_SNP [dm3] 3L_20087517_SNP [dm6]	A	C	1.956e^-4	0.677	INTRON sNPF-R
X	7618967	X_7618967_SNP [dm3] X_7724934_SNP [dm6]	T	C	1.956e^-4	0.677	SYNONYMOUS_CODING Hira
2R	17926699	2R_17926699_SNP [dm3] 2R_22039194_SNP [dm6]	G	A	1.969e^-4	0.679	INTRON CG34370
3R	24132597	3R_24132597_SNP [dm3] 3R_28306875_SNP [dm6]	A	T	1.971e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	7719564	3L_7719564_SNP [dm3] 3L_7726464_SNP [dm6]	A	C	1.977e^-4	0.68	UTR_5_PRIME CG7457 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6463898	2L_6463898_SNP [dm3] 2L_6463898_SNP [dm6]	A	T	1.985e^-4	0.682	UTR_5_PRIME CG16947	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	16202260	3L_16202260_SNP [dm3] 3L_16209160_SNP [dm6]	A	C	1.993e^-4	0.682	INTERGENIC	TF binding site mE1_TFBS_cad
2L	9104481	2L_9104481_SNP [dm3] 2L_9104481_SNP [dm6]	T	A	1.999e^-4	0.682	INTERGENIC
2L	4147037	2L_4147037_SNP [dm3] 2L_4147037_SNP [dm6]	A	T	2.007e^-4	0.682	INTERGENIC
3L	15483300	3L_15483300_SNP [dm3] 3L_15490200_SNP [dm6]	A	C	2.010e^-4	0.682	INTERGENIC
2L	21906150	2L_21906150_DEL [dm3] 2L_21906150_DEL [dm6]	CACCTCTG	C	2.013e^-4	0.682	UPSTREAM CG1428 INTERGENIC
X	7635997	X_7635997_SNP [dm3] X_7741964_SNP [dm6]	C	G	2.029e^-4	0.682	INTERGENIC
3L	9483340	3L_9483340_SNP [dm3] 3L_9490240_SNP [dm6]	A	C	2.031e^-4	0.682	INTRON CG32037	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	20561606	X_20561606_SNP [dm3] X_20690579_SNP [dm6]	C	T	2.034e^-4	0.682	UPSTREAM run EXON CR45610	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	16239344	2L_16239344_SNP [dm3] 2L_16239344_SNP [dm6]	A	G	2.036e^-4	0.682	SYNONYMOUS_CODING CG42817
2R	3079221	2R_3079221_SNP [dm3] 2R_7191716_SNP [dm6]	C	A	2.038e^-4	0.682	INTRON pk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15483291	3L_15483291_SNP [dm3] 3L_15490191_SNP [dm6]	A	T	2.040e^-4	0.682	INTERGENIC
X	12850971	X_12850971_SNP [dm3] X_12956938_SNP [dm6]	G	T	2.041e^-4	0.682	INTRON hec
3R	10436798	3R_10436798_SNP [dm3] 3R_14611076_SNP [dm6]	T	C	2.044e^-4	0.682	INTRON CG14853
X	8633305	X_8633305_SNP [dm3] X_8739272_SNP [dm6]	A	T	2.055e^-4	0.682	INTERGENIC
2R	9494569	2R_9494569_SNP [dm3] 2R_13607064_SNP [dm6]	A	G	2.056e^-4	0.682	INTERGENIC
3L	17891665	3L_17891665_SNP [dm3] 3L_17898565_SNP [dm6]	G	A	2.059e^-4	0.682	DOWNSTREAM Prestin INTERGENIC
3L	9555349	3L_9555349_SNP [dm3] 3L_9562249_SNP [dm6]	A	G	2.062e^-4	0.682	INTRON CG42673
2L	638038	2L_638038_SNP [dm3] 2L_638038_SNP [dm6]	G	C	2.065e^-4	0.682	INTERGENIC
X	13137038	X_13137038_SNP [dm3] X_13243005_SNP [dm6]	A	G	2.065e^-4	0.682	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	14460423	2L_14460423_SNP [dm3] 2L_14460423_SNP [dm6]	T	A	2.065e^-4	0.682	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	27129490	3R_27129490_SNP [dm3] 3R_31303768_SNP [dm6]	A	G	2.068e^-4	0.682	SYNONYMOUS_CODING CG11340	TF binding site mE1_TFBS_sens
X	743728	X_743728_SNP [dm3] X_849695_SNP [dm6]	C	T	2.070e^-4	0.682	INTRON CG43867
X	6058381	X_6058381_SNP [dm3] X_6164348_SNP [dm6]	T	C	2.070e^-4	0.682	INTRON Ca-alpha1T
2R	4956236	2R_4956236_INS [dm3] 2R_9068731_INS [dm6]	A	AA	2.072e^-4	0.682	UPSTREAM ana INTRON ana
2L	13341680	2L_13341680_DEL [dm3] 2L_13341680_DEL [dm6]	TAATGCAT	T	2.080e^-4	0.683	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	7202014	2L_7202014_SNP [dm3] 2L_7202014_SNP [dm6]	C	A	2.084e^-4	0.683	INTRON CG4502
2L	9444160	2L_9444160_SNP [dm3] 2L_9444160_SNP [dm6]	T	A	2.092e^-4	0.683	INTRON numb
2L	7527684	2L_7527684_SNP [dm3] 2L_7527684_SNP [dm6]	A	T	2.103e^-4	0.683	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9685540	3L_9685540_SNP [dm3] 3L_9692440_SNP [dm6]	A	G	2.104e^-4	0.683	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	9105472	2L_9105472_SNP [dm3] 2L_9105472_SNP [dm6]	A	T	2.104e^-4	0.683	INTERGENIC
2L	9105311	2L_9105311_SNP [dm3] 2L_9105311_SNP [dm6]	G	T	2.104e^-4	0.683	INTERGENIC
X	7619130	X_7619130_SNP [dm3] X_7725097_SNP [dm6]	T	A	2.108e^-4	0.683	DOWNSTREAM NELF-B INTRON Hira	TF binding site mE1_TFBS_sens
2L	7300717	2L_7300717_SNP [dm3] 2L_7300717_SNP [dm6]	C	T	2.119e^-4	0.683	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	21906159	2L_21906159_DEL [dm3] 2L_21906159_DEL [dm6]	TCGACA	T	2.125e^-4	0.683	UPSTREAM CG1428 INTERGENIC
X	11945085	X_11945085_SNP [dm3] X_12051052_SNP [dm6]	A	T	2.135e^-4	0.683	INTRON CR43960 & 1 other
2L	2021720	2L_2021720_SNP [dm3] 2L_2021720_SNP [dm6]	T	A	2.139e^-4	0.683	INTRON CG4238
2R	19553902	2R_19553902_SNP [dm3] 2R_23666379_SNP [dm6]	G	C	2.144e^-4	0.683	UPSTREAM Pde8 INTRON Pde8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9483255	3L_9483255_SNP [dm3] 3L_9490155_SNP [dm6]	T	C	2.150e^-4	0.683	UTR_3_PRIME CG32037 UPSTREAM CG32036	TF binding site mE1_TFBS_cad
3R	21876370	3R_21876370_SNP [dm3] 3R_26050648_SNP [dm6]	T	G	2.150e^-4	0.683	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2644985	3L_2644985_SNP [dm3] 3L_2644985_SNP [dm6]	T	A	2.158e^-4	0.683	UPSTREAM CG1143 INTERGENIC
3R	26618541	3R_26618541_SNP [dm3] 3R_30792819_SNP [dm6]	A	G	2.160e^-4	0.683	SYNONYMOUS_CODING wts	TF binding site mE1_TFBS_chinmo
3L	14489354	3L_14489354_SNP [dm3] 3L_14496254_SNP [dm6]	T	A	2.161e^-4	0.683	INTRON bbg	TF binding site mE1_TFBS_cad
X	6788786	X_6788786_SNP [dm3] X_6894753_SNP [dm6]	A	C	2.163e^-4	0.683	INTERGENIC
X	5742546	X_5742546_SNP [dm3] X_5848513_SNP [dm6]	T	C	2.165e^-4	0.683	INTERGENIC
3R	13926754	3R_13926754_SNP [dm3] 3R_18101032_SNP [dm6]	C	T	2.171e^-4	0.683	INTRON sr
2L	8448676	2L_8448676_SNP [dm3] 2L_8448676_SNP [dm6]	G	T	2.178e^-4	0.683	SYNONYMOUS_CODING U26
3L	4762195	3L_4762195_DEL [dm3] 3L_4762195_DEL [dm6]	GGAATTTATATTAA...	T	2.183e^-4	0.683	INTRON RhoGEF64C
X	14182626	X_14182626_SNP [dm3] X_14288593_SNP [dm6]	G	A	2.188e^-4	0.683	DOWNSTREAM Muc12Ea INTRON CG9400
X	13137037	X_13137037_SNP [dm3] X_13243004_SNP [dm6]	C	T	2.195e^-4	0.683	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15090500	2L_15090500_SNP [dm3] 2L_15090500_SNP [dm6]	T	A	2.195e^-4	0.683	INTRON CG15270
X	14090881	X_14090881_SNP [dm3] X_14196848_SNP [dm6]	T	C	2.196e^-4	0.683	SYNONYMOUS_CODING yl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14815037	3L_14815037_SNP [dm3] 3L_14821937_SNP [dm6]	A	C	2.197e^-4	0.683	INTRON CG17839
2R	11683256	2R_11683256_SNP [dm3] 2R_15795751_SNP [dm6]	C	T	2.197e^-4	0.683	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
X	20218600	X_20218600_SNP [dm3] X_20347573_SNP [dm6]	T	A	2.198e^-4	0.683	INTERGENIC
X	7613947	X_7613947_SNP [dm3] X_7719914_SNP [dm6]	C	T	2.199e^-4	0.683	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5122899	3L_5122899_SNP [dm3] 3L_5129799_SNP [dm6]	T	A	2.199e^-4	0.683	SYNONYMOUS_CODING CG4597
2L	1381522	2L_1381522_SNP [dm3] 2L_1381522_SNP [dm6]	T	C	2.200e^-4	0.683	SYNONYMOUS_CODING lea UTR_3_PRIME lea UPSTREAM CR44898 EXON CR44897	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	11276693	3L_11276693_SNP [dm3] 3L_11283593_SNP [dm6]	A	G	2.203e^-4	0.683	INTERGENIC
2L	3245320	2L_3245320_SNP [dm3] 2L_3245320_SNP [dm6]	T	C	2.204e^-4	0.683	INTERGENIC
3L	11789578	3L_11789578_SNP [dm3] 3L_11796478_SNP [dm6]	G	A	2.209e^-4	0.683	SYNONYMOUS_CODING Klp68D	TF binding site mE1_TFBS_sens
3L	7129112	3L_7129112_INS [dm3] 3L_7136012_INS [dm6]	G	GAAGAAGG	2.213e^-4	0.683	INTRON melt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	837662	3L_837662_SNP [dm3] 3L_837662_SNP [dm6]	A	C	2.214e^-4	0.683	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	5888623	3L_5888623_SNP [dm3] 3L_5895523_SNP [dm6]	T	G	2.217e^-4	0.683	DOWNSTREAM Pole2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21655013	3R_21655013_SNP [dm3] 3R_25829291_SNP [dm6]	C	G	2.222e^-4	0.683	DOWNSTREAM Mst57Dc & 1 other INTERGENIC
X	3287436	X_3287436_SNP [dm3] X_3393403_SNP [dm6]	C	T	2.239e^-4	0.684	SYNONYMOUS_CODING CG12535 INTRON CR44999	TF binding site mE1_TFBS_HSA
X	3287521	X_3287521_SNP [dm3] X_3393488_SNP [dm6]	T	C	2.239e^-4	0.684	UTR_5_PRIME CG12535 INTRON CR44999	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5773914	2L_5773914_DEL [dm3] 2L_5773914_DEL [dm6]	ATTGCC	A	2.246e^-4	0.684	UPSTREAM CG9171 INTRON CG9171	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11276715	3L_11276715_SNP [dm3] 3L_11283615_SNP [dm6]	A	C	2.247e^-4	0.684	INTERGENIC
3L	11276725	3L_11276725_SNP [dm3] 3L_11283625_SNP [dm6]	A	T	2.247e^-4	0.684	INTERGENIC
2L	21906167	2L_21906167_SNP [dm3] 2L_21906167_SNP [dm6]	A	T	2.250e^-4	0.684	UPSTREAM CG1428 INTERGENIC
3L	7473829	3L_7473829_SNP [dm3] 3L_7480729_SNP [dm6]	C	G	2.250e^-4	0.684	INTERGENIC	TF binding site mE1_TFBS_inv
2L	5456944	2L_5456944_SNP [dm3] 2L_5456944_SNP [dm6]	G	A	2.264e^-4	0.684	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8156039	X_8156039_SNP [dm3] X_8262006_SNP [dm6]	A	T	2.271e^-4	0.684	INTRON CG1632
3L	3532941	3L_3532941_SNP [dm3] 3L_3532941_SNP [dm6]	T	C	2.272e^-4	0.684	INTRON Eip63E
2L	5496684	2L_5496684_SNP [dm3] 2L_5496684_SNP [dm6]	A	G	2.288e^-4	0.684	INTERGENIC
2L	7343130	2L_7343130_SNP [dm3] 2L_7343130_SNP [dm6]	G	T	2.289e^-4	0.684	INTRON Wnt6
3L	7721688	3L_7721688_SNP [dm3] 3L_7728588_SNP [dm6]	A	G	2.290e^-4	0.684	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
X	6489864	X_6489864_SNP [dm3] X_6595831_SNP [dm6]	G	C	2.296e^-4	0.684	UTR_3_PRIME Pat1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	7613628	X_7613628_SNP [dm3] X_7719595_SNP [dm6]	G	A	2.309e^-4	0.684	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22141235	3R_22141235_SNP [dm3] 3R_26315513_SNP [dm6]	G	A	2.316e^-4	0.684	INTERGENIC
3R	11783799	3R_11783799_SNP [dm3] 3R_15958077_SNP [dm6]	C	A	2.317e^-4	0.684	INTRON Sap47
2R	13745550	2R_13745550_SNP [dm3] 2R_17858045_SNP [dm6]	A	G	2.317e^-4	0.684	INTRON olf186-F
X	5651981	X_5651981_SNP [dm3] X_5757948_SNP [dm6]	C	T	2.319e^-4	0.684	SYNONYMOUS_CODING CG15771 START_GAINED CG15771 UTR_5_PRIME CG15771	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16239646	2L_16239646_SNP [dm3] 2L_16239646_SNP [dm6]	T	C	2.329e^-4	0.684	INTRON CG42817
2R	19553962	2R_19553962_SNP [dm3] 2R_23666439_SNP [dm6]	G	A	2.332e^-4	0.684	UPSTREAM Pde8 INTRON Pde8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14271088	2R_14271088_DEL [dm3] 2R_18383583_DEL [dm6]	TAT	T	2.338e^-4	0.684	UPSTREAM IM1 & 2 others INTERGENIC
X	17945999	X_17945999_SNP [dm3] X_18051966_SNP [dm6]	T	C	2.340e^-4	0.684	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18454882	X_18454882_SNP [dm3] X_18560849_SNP [dm6]	G	A	2.344e^-4	0.684	INTRON Bx
2L	9105664	2L_9105664_SNP [dm3] 2L_9105664_SNP [dm6]	G	A	2.345e^-4	0.684	INTERGENIC
3R	18480164	3R_18480164_SNP [dm3] 3R_22654442_SNP [dm6]	C	T	2.347e^-4	0.684	INTRON CG45058
X	4475044	X_4475044_SNP [dm3] X_4581011_SNP [dm6]	G	A	2.348e^-4	0.684	INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4933597	2L_4933597_SNP [dm3] 2L_4933597_SNP [dm6]	T	C	2.349e^-4	0.684	SYNONYMOUS_CODING hoe2
3L	9515096	3L_9515096_SNP [dm3] 3L_9521996_SNP [dm6]	A	G	2.349e^-4	0.684	INTRON CG33700
2L	2279895	2L_2279895_SNP [dm3] 2L_2279895_SNP [dm6]	G	A	2.350e^-4	0.684	UPSTREAM CR43753 INTERGENIC
3L	18575735	3L_18575735_SNP [dm3] 3L_18582635_SNP [dm6]	C	A	2.351e^-4	0.684	UPSTREAM CR45435 INTERGENIC
3R	22615421	3R_22615421_SNP [dm3] 3R_26789699_SNP [dm6]	T	A	2.363e^-4	0.684	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	8137554	2R_8137554_SNP [dm3] 2R_12250049_SNP [dm6]	G	A	2.365e^-4	0.684	INTERGENIC
2L	606460	2L_606460_SNP [dm3] 2L_606460_SNP [dm6]	T	C	2.367e^-4	0.684	DOWNSTREAM CR43648 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12502299	3R_12502299_SNP [dm3] 3R_16676577_SNP [dm6]	C	A	2.371e^-4	0.684	INTRON Ubx	TF binding site mE1_TFBS_cad
2R	5395543	2R_5395543_SNP [dm3] 2R_9508038_SNP [dm6]	C	T	2.374e^-4	0.684	UTR_5_PRIME brp INTRON brp	TF binding site mE1_TFBS_Trl
2L	9430498	2L_9430498_SNP [dm3] 2L_9430498_SNP [dm6]	T	A	2.375e^-4	0.684	UPSTREAM FucTB & 1 other INTRON FucTB
3L	9508876	3L_9508876_SNP [dm3] 3L_9515776_SNP [dm6]	G	T	2.375e^-4	0.684	INTRON CG33700
3L	6902842	3L_6902842_SNP [dm3] 3L_6909742_SNP [dm6]	C	T	2.377e^-4	0.684	INTERGENIC
3R	20479009	3R_20479009_SNP [dm3] 3R_24653287_SNP [dm6]	A	T	2.379e^-4	0.684	UTR_3_PRIME ash2 DOWNSTREAM CG31125	TF binding site mE1_TFBS_chinmo
2R	13786939	2R_13786939_SNP [dm3] 2R_17899434_SNP [dm6]	A	T	2.387e^-4	0.684	INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	712622	3L_712622_SNP [dm3] 3L_712622_SNP [dm6]	G	A	2.390e^-4	0.684	UPSTREAM CG13896 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	1862418	2L_1862418_SNP [dm3] 2L_1862418_SNP [dm6]	G	A	2.390e^-4	0.684	INTRON CG31663
3L	3699344	3L_3699344_SNP [dm3] 3L_3699344_SNP [dm6]	A	G	2.392e^-4	0.684	INTERGENIC
X	2552680	X_2552680_SNP [dm3] X_2658647_SNP [dm6]	A	C	2.393e^-4	0.684	UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	5121954	3R_5121954_SNP [dm3] 3R_9296232_SNP [dm6]	A	G	2.395e^-4	0.684	INTRON CG8861
3L	18202714	3L_18202714_SNP [dm3] 3L_18209614_SNP [dm6]	T	G	2.398e^-4	0.684	INTERGENIC
3L	2645041	3L_2645041_SNP [dm3] 3L_2645041_SNP [dm6]	G	T	2.408e^-4	0.685	UPSTREAM CG1143 INTERGENIC
3L	15483243	3L_15483243_SNP [dm3] 3L_15490143_SNP [dm6]	G	C	2.412e^-4	0.685	INTERGENIC
X	5594395	X_5594395_SNP [dm3] X_5700362_SNP [dm6]	G	T	2.419e^-4	0.685	INTRON CG4096
2L	16239657	2L_16239657_SNP [dm3] 2L_16239657_SNP [dm6]	C	T	2.420e^-4	0.685	INTRON CG42817
3L	13310278	3L_13310278_SNP [dm3] 3L_13317178_SNP [dm6]	C	G	2.422e^-4	0.685	INTERGENIC
3R	13600160	3R_13600160_INS [dm3] 3R_17774438_INS [dm6]	T	TTTT	2.428e^-4	0.685	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
2R	4951152	2R_4951152_SNP [dm3] 2R_9063647_SNP [dm6]	T	G	2.430e^-4	0.685	INTRON ana	regulatory region REDfly_CRMs
X	8156863	X_8156863_SNP [dm3] X_8262830_SNP [dm6]	T	C	2.436e^-4	0.685	INTRON CG1632	TF binding site BDTNP1_TFBS_da
3L	1073755	3L_1073755_DEL [dm3] 3L_1073755_DEL [dm6]	TGCCCGCCT	T	2.438e^-4	0.685	INTRON bab1
3L	15308611	3L_15308611_SNP [dm3] 3L_15315511_SNP [dm6]	T	C	2.439e^-4	0.685	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	19817600	2L_19817600_SNP [dm3] 2L_19817600_SNP [dm6]	A	C	2.449e^-4	0.687	INTRON sick	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	20478904	3R_20478904_SNP [dm3] 3R_24653182_SNP [dm6]	T	C	2.454e^-4	0.687	SYNONYMOUS_CODING ash2 DOWNSTREAM CG31125
X	16154167	X_16154167_SNP [dm3] X_16260134_SNP [dm6]	T	A	2.462e^-4	0.687	INTERGENIC
3L	10756244	3L_10756244_SNP [dm3] 3L_10763144_SNP [dm6]	A	G	2.463e^-4	0.687	INTERGENIC
3L	9716737	3L_9716737_SNP [dm3] 3L_9723637_SNP [dm6]	C	T	2.464e^-4	0.687	SYNONYMOUS_CODING defl UPSTREAM nbs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	17672226	3L_17672226_SNP [dm3] 3L_17679126_SNP [dm6]	C	A	2.478e^-4	0.688	INTRON CG34251
3R	15767069	3R_15767069_SNP [dm3] 3R_19941347_SNP [dm6]	G	A	2.482e^-4	0.688	INTRON Hs6st
2R	11340700	2R_11340700_SNP [dm3] 2R_15453195_SNP [dm6]	T	G	2.484e^-4	0.688	INTRON CG43729
3L	16824644	3L_16824644_SNP [dm3] 3L_16831544_SNP [dm6]	A	G	2.484e^-4	0.688	INTERGENIC	TF binding site mE1_TFBS_inv
3R	16890386	3R_16890386_SNP [dm3] 3R_21064664_SNP [dm6]	A	G	2.495e^-4	0.688	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2R	9147422	2R_9147422_SNP [dm3] 2R_13259917_SNP [dm6]	A	T	2.497e^-4	0.688	UPSTREAM CG42319 INTERGENIC
2R	11278216	2R_11278216_SNP [dm3] 2R_15390711_SNP [dm6]	T	C	2.499e^-4	0.688	INTERGENIC
2L	17302634	2L_17302634_SNP [dm3] 2L_17302634_SNP [dm6]	A	G	2.500e^-4	0.688	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	743046	3L_743046_SNP [dm3] 3L_743046_SNP [dm6]	A	T	2.503e^-4	0.688	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	677254	3L_677254_SNP [dm3] 3L_677254_SNP [dm6]	T	A	2.505e^-4	0.688	DOWNSTREAM CG17129 INTERGENIC
3L	7010422	3L_7010422_SNP [dm3] 3L_7017322_SNP [dm6]	T	A	2.517e^-4	0.688	INTRON Mp
3L	22232878	3L_22232878_SNP [dm3] 3L_22239778_SNP [dm6]	C	T	2.517e^-4	0.688	INTRON olf413	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3035757	X_3035757_SNP [dm3] X_3141724_SNP [dm6]	A	T	2.518e^-4	0.688	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	9445153	2L_9445153_SNP [dm3] 2L_9445153_SNP [dm6]	T	C	2.520e^-4	0.688	INTRON numb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9247087	2R_9247087_SNP [dm3] 2R_13359582_SNP [dm6]	A	G	2.530e^-4	0.688	INTERGENIC
3L	2645044	3L_2645044_SNP [dm3] 3L_2645044_SNP [dm6]	T	G	2.530e^-4	0.688	UPSTREAM CG1143 INTERGENIC
2L	19896738	2L_19896738_SNP [dm3] 2L_19896738_SNP [dm6]	T	A	2.535e^-4	0.688	INTRON sick
X	7993142	X_7993142_SNP [dm3] X_8099109_SNP [dm6]	T	A	2.538e^-4	0.688	INTRON CG2258	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4933968	2L_4933968_SNP [dm3] 2L_4933968_SNP [dm6]	G	A	2.540e^-4	0.688	INTRON hoe2
2L	3796517	2L_3796517_SNP [dm3] 2L_3796517_SNP [dm6]	T	C	2.544e^-4	0.688	SYNONYMOUS_CODING CG3921
3L	4840793	3L_4840793_SNP [dm3] 3L_4840793_SNP [dm6]	T	G	2.545e^-4	0.688	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	13875526	2L_13875526_SNP [dm3] 2L_13875526_SNP [dm6]	C	T	2.552e^-4	0.688	INTRON CenG1A
2L	3245318	2L_3245318_SNP [dm3] 2L_3245318_SNP [dm6]	A	T	2.556e^-4	0.688	INTERGENIC
3L	3143885	3L_3143885_SNP [dm3] 3L_3143885_SNP [dm6]	G	C	2.556e^-4	0.688	UTR_5_PRIME CG1291 UPSTREAM CG11537	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	20478993	3R_20478993_SNP [dm3] 3R_24653271_SNP [dm6]	G	T	2.559e^-4	0.688	UTR_3_PRIME ash2 DOWNSTREAM CG31125	TF binding site mE1_TFBS_chinmo
3R	4361746	3R_4361746_SNP [dm3] 3R_8536024_SNP [dm6]	C	T	2.563e^-4	0.688	INTERGENIC
3R	9823760	3R_9823760_SNP [dm3] 3R_13998038_SNP [dm6]	T	C	2.568e^-4	0.689	INTRON rdx	TF binding site mE1_TFBS_HSA
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	2.572e^-4	0.689	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
3L	7072423	3L_7072423_SNP [dm3] 3L_7079323_SNP [dm6]	C	A	2.580e^-4	0.69	INTERGENIC
2R	18496192	2R_18496192_SNP [dm3] 2R_22608687_SNP [dm6]	T	C	2.589e^-4	0.692	SYNONYMOUS_CODING Vps20 DOWNSTREAM RpS16 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26618205	3R_26618205_SNP [dm3] 3R_30792483_SNP [dm6]	C	T	2.598e^-4	0.693	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
2R	10821694	2R_10821694_SNP [dm3] 2R_14934189_SNP [dm6]	C	A	2.605e^-4	0.694	UPSTREAM CG10253 DOWNSTREAM CG12853 INTRON CG10253	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	7719222	3L_7719222_SNP [dm3] 3L_7726122_SNP [dm6]	G	A	2.613e^-4	0.694	SYNONYMOUS_CODING CG7457 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	795404	2L_795404_SNP [dm3] 2L_795404_SNP [dm6]	T	G	2.627e^-4	0.694	INTERGENIC
3L	12056988	3L_12056988_SNP [dm3] 3L_12063888_SNP [dm6]	A	G	2.628e^-4	0.694	INTRON rols
2L	17282955	2L_17282955_SNP [dm3] 2L_17282955_SNP [dm6]	C	A	2.629e^-4	0.694	INTERGENIC
2L	19825351	2L_19825351_SNP [dm3] 2L_19825351_SNP [dm6]	A	G	2.631e^-4	0.694	INTRON sick
2R	18282632	2R_18282632_SNP [dm3] 2R_22395127_SNP [dm6]	T	A	2.631e^-4	0.694	INTRON babos
3R	10428058	3R_10428058_SNP [dm3] 3R_14602336_SNP [dm6]	C	T	2.634e^-4	0.694	INTRON stumps	TF binding site mE1_TFBS_HSA
2R	18769488	2R_18769488_SNP [dm3] 2R_22881965_SNP [dm6]	G	A	2.638e^-4	0.694	DOWNSTREAM PIP5K59B & 1 other INTRON CG3501	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	743058	3L_743058_SNP [dm3] 3L_743058_SNP [dm6]	T	A	2.644e^-4	0.695	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	6451166	X_6451166_SNP [dm3] X_6557133_SNP [dm6]	C	T	2.649e^-4	0.695	SYNONYMOUS_CODING CG34417 INTRON CG34417
3R	13599046	3R_13599046_SNP [dm3] 3R_17773324_SNP [dm6]	G	A	2.649e^-4	0.695	SYNONYMOUS_CODING CG43102
3L	11532947	3L_11532947_SNP [dm3] 3L_11539847_SNP [dm6]	A	G	2.655e^-4	0.695	INTRON Mob2
X	10517805	X_10517805_SNP [dm3] X_10623772_SNP [dm6]	G	C	2.660e^-4	0.695	UTR_3_PRIME CG9806 UPSTREAM Rab9Db
3L	10025546	3L_10025546_SNP [dm3] 3L_10032446_SNP [dm6]	C	T	2.668e^-4	0.695	INTRON dpr6
2L	13211544	2L_13211544_SNP [dm3] 2L_13211544_SNP [dm6]	T	C	2.669e^-4	0.695	NON_SYNONYMOUS_CODING CG15482 DOWNSTREAM Pect & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17672022	3L_17672022_SNP [dm3] 3L_17678922_SNP [dm6]	C	A	2.673e^-4	0.695	INTRON CG34251
3L	20080577	3L_20080577_SNP [dm3] 3L_20087477_SNP [dm6]	T	A	2.674e^-4	0.695	INTRON sNPF-R
X	10517804	X_10517804_SNP [dm3] X_10623771_SNP [dm6]	A	G	2.679e^-4	0.696	UTR_3_PRIME CG9806 UPSTREAM Rab9Db
3R	15292548	3R_15292548_SNP [dm3] 3R_19466826_SNP [dm6]	C	G	2.683e^-4	0.696	INTRON Dys
2L	9425162	2L_9425162_SNP [dm3] 2L_9425162_SNP [dm6]	C	T	2.690e^-4	0.696	SYNONYMOUS_CODING Mco1
3L	10866281	3L_10866281_SNP [dm3] 3L_10873181_SNP [dm6]	G	A	2.691e^-4	0.696	SYNONYMOUS_CODING tna	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12110153	2R_12110153_SNP [dm3] 2R_16222648_SNP [dm6]	T	A	2.704e^-4	0.698	UPSTREAM mrj & 1 other DOWNSTREAM CG15706 EXON CR43898
3R	18780271	3R_18780271_SNP [dm3] 3R_22954549_SNP [dm6]	G	A	2.709e^-4	0.699	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	3080414	2R_3080414_SNP [dm3] 2R_7192909_SNP [dm6]	C	A	2.717e^-4	0.699	UTR_5_PRIME pk INTRON pk	TF binding site mE1_TFBS_cad
2L	1867630	2L_1867630_SNP [dm3] 2L_1867630_SNP [dm6]	T	A	2.724e^-4	0.699	INTRON CG31663
3L	7275931	3L_7275931_SNP [dm3] 3L_7282831_SNP [dm6]	C	T	2.726e^-4	0.699	INTRON unc-13-4A
X	21292976	X_21292976_SNP [dm3] X_21421949_SNP [dm6]	A	G	2.727e^-4	0.699	DOWNSTREAM CG42343 INTERGENIC	TF binding site mE1_TFBS_cnc
X	9942592	X_9942592_SNP [dm3] X_10048559_SNP [dm6]	C	T	2.732e^-4	0.699	UPSTREAM CR45185 & 1 other INTRON Cht6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3R	12970762	3R_12970762_SNP [dm3] 3R_17145040_SNP [dm6]	A	T	2.733e^-4	0.699	UTR_3_PRIME m-cup DOWNSTREAM m-cup
3L	14925731	3L_14925731_MNP [dm3] 3L_14932631_MNP [dm6]	TGTA	ATGG	2.742e^-4	0.699	INTRON DCX-EMAP
3L	7721263	3L_7721263_SNP [dm3] 3L_7728163_SNP [dm6]	T	C	2.758e^-4	0.699	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	20821277	3L_20821277_SNP [dm3] 3L_20828177_SNP [dm6]	C	T	2.762e^-4	0.699	UTR_5_PRIME Pka-R1 UPSTREAM Pka-R1 INTRON Pka-R1
3R	10574955	3R_10574955_SNP [dm3] 3R_14749233_SNP [dm6]	T	C	2.774e^-4	0.699	UPSTREAM jvl & 1 other INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3L	12055437	3L_12055437_SNP [dm3] 3L_12062337_SNP [dm6]	C	G	2.776e^-4	0.699	INTRON rols	TF binding site BDTNP1_TFBS_da
X	19690855	X_19690855_SNP [dm3] X_19796822_SNP [dm6]	G	C	2.784e^-4	0.699	INTERGENIC
X	17947626	X_17947626_SNP [dm3] X_18053593_SNP [dm6]	G	A	2.792e^-4	0.699	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7129114	3L_7129114_SNP [dm3] 3L_7136014_SNP [dm6]	G	A	2.793e^-4	0.699	INTRON melt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17774715	2R_17774715_SNP [dm3] 2R_21887210_SNP [dm6]	C	T	2.796e^-4	0.699	INTRON Fili
2R	12443558	2R_12443558_INS [dm3] 2R_16556053_INS [dm6]	T	TT	2.804e^-4	0.699	INTRON Syn2
3R	18480162	3R_18480162_SNP [dm3] 3R_22654440_SNP [dm6]	A	C	2.807e^-4	0.699	INTRON CG45058
3L	14489373	3L_14489373_SNP [dm3] 3L_14496273_SNP [dm6]	C	T	2.808e^-4	0.699	INTRON bbg	TF binding site mE1_TFBS_cad
3L	9483249	3L_9483249_SNP [dm3] 3L_9490149_SNP [dm6]	G	T	2.822e^-4	0.699	UTR_3_PRIME CG32037 UPSTREAM CG32036	TF binding site mE1_TFBS_cad
X	7612548	X_7612548_SNP [dm3] X_7718515_SNP [dm6]	A	C	2.822e^-4	0.699	UPSTREAM CG15478 INTERGENIC
2R	9127641	2R_9127641_SNP [dm3] 2R_13240136_SNP [dm6]	C	T	2.824e^-4	0.699	SYNONYMOUS_CODING GstE14 UPSTREAM CG4679	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9007178	X_9007178_SNP [dm3] X_9113145_SNP [dm6]	T	A	2.825e^-4	0.699	INTRON AP-1gamma
2R	4951156	2R_4951156_SNP [dm3] 2R_9063651_SNP [dm6]	T	A	2.832e^-4	0.699	INTRON ana	regulatory region REDfly_CRMs
3L	8532579	3L_8532579_SNP [dm3] 3L_8539479_SNP [dm6]	T	A	2.836e^-4	0.699	INTERGENIC
3R	3719215	3R_3719215_SNP [dm3] 3R_7893493_SNP [dm6]	A	G	2.836e^-4	0.699	INTRON mRpS9 & 1 other
3R	19283761	3R_19283761_SNP [dm3] 3R_23458039_SNP [dm6]	A	T	2.841e^-4	0.699	INTRON CG4374
2L	9444255	2L_9444255_SNP [dm3] 2L_9444255_SNP [dm6]	G	T	2.842e^-4	0.699	INTRON numb
2R	14671796	2R_14671796_SNP [dm3] 2R_18784291_SNP [dm6]	G	A	2.849e^-4	0.699	INTRON CG15080	enhancer mE1_CBP_Enhancers
3R	16003528	3R_16003528_SNP [dm3] 3R_20177806_SNP [dm6]	G	A	2.852e^-4	0.699	INTERGENIC
2R	10998487	2R_10998487_SNP [dm3] 2R_15110982_SNP [dm6]	T	C	2.855e^-4	0.699	INTERGENIC
2R	16128279	2R_16128279_SNP [dm3] 2R_20240774_SNP [dm6]	A	G	2.861e^-4	0.699	INTRON Efhc1.2
2L	9439036	2L_9439036_SNP [dm3] 2L_9439036_SNP [dm6]	G	C	2.862e^-4	0.699	DOWNSTREAM CG33723 INTRON numb
X	14157477	X_14157477_SNP [dm3] X_14263444_SNP [dm6]	A	G	2.866e^-4	0.699	SPLICE_SITE_REGION CG1461 INTRON CG1461
3R	23141757	3R_23141757_SNP [dm3] 3R_27316035_SNP [dm6]	T	A	2.870e^-4	0.699	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	12976309	2R_12976309_SNP [dm3] 2R_17088804_SNP [dm6]	T	G	2.885e^-4	0.699	SYNONYMOUS_CODING Sply
3L	14816407	3L_14816407_SNP [dm3] 3L_14823307_SNP [dm6]	T	G	2.888e^-4	0.699	INTRON CG17839
2L	4328709	2L_4328709_SNP [dm3] 2L_4328709_SNP [dm6]	T	G	2.889e^-4	0.699	INTRON CG16857	TF binding site mE1_TFBS_chinmo
2R	6964734	2R_6964734_SNP [dm3] 2R_11077229_SNP [dm6]	G	A	2.899e^-4	0.699	INTRON luna	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11799257	2R_11799257_SNP [dm3] 2R_15911752_SNP [dm6]	A	G	2.906e^-4	0.699	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2645026	3L_2645026_SNP [dm3] 3L_2645026_SNP [dm6]	T	A	2.907e^-4	0.699	UPSTREAM CG1143 INTERGENIC
2L	6508912	2L_6508912_SNP [dm3] 2L_6508912_SNP [dm6]	T	A	2.908e^-4	0.699	UPSTREAM CR44775 INTRON CG31637	TF binding site BDTNP1_TFBS_hb
3R	17684793	3R_17684793_SNP [dm3] 3R_21859071_SNP [dm6]	A	C	2.909e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16052814	3R_16052814_SNP [dm3] 3R_20227092_SNP [dm6]	C	T	2.911e^-4	0.699	INTRON Nlg4
X	3380537	X_3380537_SNP [dm3] X_3486504_SNP [dm6]	A	G	2.914e^-4	0.699	NON_SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_sens
X	7615074	X_7615074_DEL [dm3] X_7721041_DEL [dm6]	TT	T	2.922e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6253307	3R_6253307_SNP [dm3] 3R_10427585_SNP [dm6]	G	T	2.922e^-4	0.699	INTERGENIC
2R	17894354	2R_17894354_SNP [dm3] 2R_22006849_SNP [dm6]	A	G	2.931e^-4	0.699	INTRON CG34370
3L	1103414	3L_1103414_SNP [dm3] 3L_1103414_SNP [dm6]	T	C	2.935e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	16325368	2R_16325368_SNP [dm3] 2R_20437863_SNP [dm6]	C	A	2.948e^-4	0.699	INTRON CG12484
3L	12568589	3L_12568589_SNP [dm3] 3L_12575489_SNP [dm6]	G	T	2.953e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	22782220	3R_22782220_SNP [dm3] 3R_26956498_SNP [dm6]	G	A	2.955e^-4	0.699	INTRON CG6330	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3L	19516540	3L_19516540_SNP [dm3] 3L_19523440_SNP [dm6]	G	A	2.971e^-4	0.699	INTRON Cpr76Bc
3L	9177943	3L_9177943_SNP [dm3] 3L_9184843_SNP [dm6]	A	C	2.975e^-4	0.699	INTERGENIC
X	17947646	X_17947646_INS [dm3] X_18053613_INS [dm6]	G	GTGTGTATG	2.976e^-4	0.699	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19835455	2L_19835455_SNP [dm3] 2L_19835455_SNP [dm6]	A	C	2.976e^-4	0.699	INTRON sick
3R	15292459	3R_15292459_SNP [dm3] 3R_19466737_SNP [dm6]	A	C	2.979e^-4	0.699	INTRON Dys
3L	7461509	3L_7461509_SNP [dm3] 3L_7468409_SNP [dm6]	G	T	2.983e^-4	0.699	UTR_3_PRIME CG42660 & 2 others
2R	12193614	2R_12193614_SNP [dm3] 2R_16306109_SNP [dm6]	G	A	2.989e^-4	0.699	EXON CR45232
2L	13875541	2L_13875541_SNP [dm3] 2L_13875541_SNP [dm6]	C	G	2.992e^-4	0.699	INTRON CenG1A
3L	1103305	3L_1103305_SNP [dm3] 3L_1103305_SNP [dm6]	T	G	3.002e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	15693061	3L_15693061_SNP [dm3] 3L_15699961_SNP [dm6]	C	T	3.002e^-4	0.699	UPSTREAM comm2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11843425	3L_11843425_SNP [dm3] 3L_11850325_SNP [dm6]	T	A	3.002e^-4	0.699	DOWNSTREAM CG44837 INTERGENIC
3L	4545922	3L_4545922_SNP [dm3] 3L_4545922_SNP [dm6]	G	A	3.004e^-4	0.699	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12834469	3L_12834469_INS [dm3] 3L_12841369_INS [dm6]	A	AA	3.006e^-4	0.699	INTRON CG10960
3L	13990762	3L_13990762_SNP [dm3] 3L_13997662_SNP [dm6]	G	A	3.013e^-4	0.699	NON_SYNONYMOUS_CODING CG17361 DOWNSTREAM CG17359	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12325195	2L_12325195_INS [dm3] 2L_12325195_INS [dm6]	A	ACGTAAAGCAAAATATTTTC...	3.021e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9052774	2L_9052774_SNP [dm3] 2L_9052774_SNP [dm6]	G	T	3.028e^-4	0.699	UTR_3_PRIME CG31708
3L	3103931	3L_3103931_SNP [dm3] 3L_3103931_SNP [dm6]	T	C	3.033e^-4	0.699	INTRON Cht7
2L	19841437	2L_19841437_SNP [dm3] 2L_19841437_SNP [dm6]	G	A	3.034e^-4	0.699	INTRON sick
3L	11708590	3L_11708590_SNP [dm3] 3L_11715490_SNP [dm6]	G	A	3.036e^-4	0.699	UPSTREAM CG14132 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	7622393	X_7622393_SNP [dm3] X_7728360_SNP [dm6]	C	G	3.040e^-4	0.699	UTR_5_PRIME NELF-B UPSTREAM CG12155	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1549633	2L_1549633_SNP [dm3] 2L_1549633_SNP [dm6]	A	G	3.046e^-4	0.699	INTERGENIC
3L	14835301	3L_14835301_SNP [dm3] 3L_14842201_SNP [dm6]	T	A	3.047e^-4	0.699	INTRON CG17839
2L	4287700	2L_4287700_SNP [dm3] 2L_4287700_SNP [dm6]	G	C	3.049e^-4	0.699	INTRON tutl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7278942	3R_7278942_SNP [dm3] 3R_11453220_SNP [dm6]	A	G	3.051e^-4	0.699	SYNONYMOUS_CODING PGRP-LB INTRON CG17230	TF binding site mE1_TFBS_chinmo
2R	8137155	2R_8137155_SNP [dm3] 2R_12249650_SNP [dm6]	A	G	3.054e^-4	0.699	INTERGENIC
2R	8137167	2R_8137167_INS [dm3] 2R_12249662_INS [dm6]	C	CCT	3.054e^-4	0.699	INTERGENIC
2R	8137175	2R_8137175_INS [dm3] 2R_12249670_INS [dm6]	C	TCTT	3.054e^-4	0.699	INTERGENIC
X	7611716	X_7611716_SNP [dm3] X_7717683_SNP [dm6]	C	T	3.057e^-4	0.699	INTRON CG15478
3R	14395022	3R_14395022_SNP [dm3] 3R_18569300_SNP [dm6]	G	A	3.064e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	14487853	3L_14487853_SNP [dm3] 3L_14494753_SNP [dm6]	G	C	3.077e^-4	0.699	INTRON bbg
X	11320993	X_11320993_SNP [dm3] X_11426960_SNP [dm6]	G	A	3.082e^-4	0.699	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16344746	X_16344746_SNP [dm3] X_16450713_SNP [dm6]	A	T	3.086e^-4	0.699	INTRON Rbp2
3L	11018065	3L_11018065_SNP [dm3] 3L_11024965_SNP [dm6]	A	G	3.092e^-4	0.699	UPSTREAM CG32079 DOWNSTREAM Fad2 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	9601268	X_9601268_SNP [dm3] X_9707235_SNP [dm6]	T	A	3.099e^-4	0.699	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	15488966	3L_15488966_SNP [dm3] 3L_15495866_SNP [dm6]	G	T	3.099e^-4	0.699	UPSTREAM CG12355 & 1 other INTERGENIC
2R	8129037	2R_8129037_SNP [dm3] 2R_12241532_SNP [dm6]	T	A	3.105e^-4	0.699	SPLICE_SITE_REGION CG43315 DOWNSTREAM CG13170 INTRON CG43315
2L	8740651	2L_8740651_SNP [dm3] 2L_8740651_SNP [dm6]	T	A	3.111e^-4	0.699	UTR_5_PRIME raw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3R	25036733	3R_25036733_SNP [dm3] 3R_29211011_SNP [dm6]	C	G	3.112e^-4	0.699	INTERGENIC
2R	1787294	2R_1787294_SNP [dm3] 2R_5899789_SNP [dm6]	G	T	3.124e^-4	0.699	INTRON CG43366	TF binding site mE1_TFBS_Trl
2L	19802428	2L_19802428_SNP [dm3] 2L_19802428_SNP [dm6]	A	G	3.130e^-4	0.699	INTRON sick
X	11321086	X_11321086_SNP [dm3] X_11427053_SNP [dm6]	T	C	3.133e^-4	0.699	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9408682	3L_9408682_SNP [dm3] 3L_9415582_SNP [dm6]	T	C	3.133e^-4	0.699	DOWNSTREAM CG3982 INTRON CG3967
X	1196886	X_1196886_SNP [dm3] X_1302853_SNP [dm6]	T	C	3.139e^-4	0.699	INTRON DAAM	TF binding site mE1_TFBS_chinmo
3R	11131180	3R_11131180_SNP [dm3] 3R_15305458_SNP [dm6]	T	G	3.145e^-4	0.699	SYNONYMOUS_CODING Tm1 DOWNSTREAM Tm1 INTRON Tm1	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25727862	3R_25727862_SNP [dm3] 3R_29902140_SNP [dm6]	G	T	3.147e^-4	0.699	INTRON CG31038
3L	7721230	3L_7721230_SNP [dm3] 3L_7728130_SNP [dm6]	G	A	3.148e^-4	0.699	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_HSA
3L	11168350	3L_11168350_SNP [dm3] 3L_11175250_SNP [dm6]	C	T	3.155e^-4	0.699	INTRON CG14142	TF binding site mE1_TFBS_cad
3L	14565106	3L_14565106_DEL [dm3] 3L_14572006_DEL [dm6]	TT	T	3.162e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9515093	3L_9515093_SNP [dm3] 3L_9521993_SNP [dm6]	C	G	3.162e^-4	0.699	INTRON CG33700
3L	6059888	3L_6059888_SNP [dm3] 3L_6066788_SNP [dm6]	T	C	3.165e^-4	0.699	SYNONYMOUS_CODING CG42269	TF binding site mE1_TFBS_chinmo
3L	13487564	3L_13487564_SNP [dm3] 3L_13494464_SNP [dm6]	G	T	3.165e^-4	0.699	INTRON Tgi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	19822544	2L_19822544_SNP [dm3] 2L_19822544_SNP [dm6]	A	C	3.166e^-4	0.699	INTRON sick
X	9287766	X_9287766_SNP [dm3] X_9393733_SNP [dm6]	T	C	3.172e^-4	0.699	INTRON mgl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	3465305	X_3465305_SNP [dm3] X_3571272_SNP [dm6]	G	A	3.186e^-4	0.699	SYNONYMOUS_CODING ppk8 DOWNSTREAM CG2875 INTRON CG32791
2R	18475339	2R_18475339_SNP [dm3] 2R_22587834_SNP [dm6]	A	C	3.192e^-4	0.699	INTRON dnr1
2R	18475340	2R_18475340_SNP [dm3] 2R_22587835_SNP [dm6]	G	A	3.192e^-4	0.699	INTRON dnr1
2L	7002231	2L_7002231_SNP [dm3] 2L_7002231_SNP [dm6]	G	A	3.197e^-4	0.699	INTRON uif
3R	20402454	3R_20402454_INS [dm3] 3R_24576732_INS [dm6]	A	ATA	3.197e^-4	0.699	INTRON CG13624
3R	12898355	3R_12898355_SNP [dm3] 3R_17072633_SNP [dm6]	A	G	3.198e^-4	0.699	UTR_5_PRIME Ns1 UPSTREAM mRpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9510193	3L_9510193_SNP [dm3] 3L_9517093_SNP [dm6]	C	A	3.209e^-4	0.699	INTRON CG33700
2L	17302602	2L_17302602_SNP [dm3] 2L_17302602_SNP [dm6]	T	A	3.212e^-4	0.699	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	4944897	2R_4944897_SNP [dm3] 2R_9057392_SNP [dm6]	C	A	3.216e^-4	0.699	INTRON CG13743
3L	741724	3L_741724_INS [dm3] 3L_741724_INS [dm6]	C	CGC	3.222e^-4	0.699	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	4340520	3R_4340520_SNP [dm3] 3R_8514798_SNP [dm6]	T	A	3.223e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	14121064	X_14121064_SNP [dm3] X_14227031_SNP [dm6]	G	A	3.224e^-4	0.699	SYNONYMOUS_CODING mRpL38	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4091291	3L_4091291_SNP [dm3] 3L_4091291_SNP [dm6]	C	A	3.230e^-4	0.699	UTR_3_PRIME CG14989 DOWNSTREAM CG14989
X	2552057	X_2552057_SNP [dm3] X_2658024_SNP [dm6]	G	T	3.232e^-4	0.699	UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4821762	3L_4821762_DEL [dm3] 3L_4821762_DEL [dm6]	ATTCTAGCACA...	A	3.236e^-4	0.699	INTRON Dhc64C
2R	16837257	2R_16837257_SNP [dm3] 2R_20949752_SNP [dm6]	C	T	3.242e^-4	0.699	UPSTREAM CG33704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	1072752	2L_1072752_SNP [dm3] 2L_1072752_SNP [dm6]	G	T	3.245e^-4	0.699	INTRON S
X	11320962	X_11320962_DEL [dm3] X_11426929_DEL [dm6]	TAA	T	3.246e^-4	0.699	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16495547	3L_16495547_SNP [dm3] 3L_16502447_SNP [dm6]	A	G	3.250e^-4	0.699	SYNONYMOUS_CODING CG43373 INTRON CG43373	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8505284	2L_8505284_SNP [dm3] 2L_8505284_SNP [dm6]	C	A	3.263e^-4	0.699	INTRON Dh31
2R	14050808	2R_14050808_SNP [dm3] 2R_18163303_SNP [dm6]	C	T	3.263e^-4	0.699	SYNONYMOUS_CODING CG10915	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10120953	3R_10120953_SNP [dm3] 3R_14295231_SNP [dm6]	T	C	3.264e^-4	0.699	INTRON CG12207
2R	11278234	2R_11278234_SNP [dm3] 2R_15390729_SNP [dm6]	C	G	3.264e^-4	0.699	INTERGENIC
2L	4278870	2L_4278870_SNP [dm3] 2L_4278870_SNP [dm6]	A	T	3.266e^-4	0.699	SYNONYMOUS_CODING Art2	TF binding site BDTNP1_TFBS_dl
3L	22200488	3L_22200488_INS [dm3] 3L_22207388_INS [dm6]	T	TT	3.268e^-4	0.699	INTRON olf413
3R	19116894	3R_19116894_INS [dm3] 3R_23291172_INS [dm6]	T	GG	3.269e^-4	0.699	UTR_3_PRIME pnt UPSTREAM CG4434
X	11320956	X_11320956_SNP [dm3] X_11426923_SNP [dm6]	T	A	3.273e^-4	0.699	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19804790	2L_19804790_SNP [dm3] 2L_19804790_SNP [dm6]	C	G	3.276e^-4	0.699	INTRON sick
2R	12453917	2R_12453917_SNP [dm3] 2R_16566412_SNP [dm6]	C	T	3.287e^-4	0.699	INTRON CG4945
3L	6903932	3L_6903932_SNP [dm3] 3L_6910832_SNP [dm6]	C	G	3.287e^-4	0.699	INTERGENIC
3R	2772237	3R_2772237_SNP [dm3] 3R_6946515_SNP [dm6]	G	A	3.287e^-4	0.699	INTRON Antp	TF binding site mE1_TFBS_cad
2L	19209731	2L_19209731_SNP [dm3] 2L_19209731_SNP [dm6]	T	C	3.288e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26618196	3R_26618196_SNP [dm3] 3R_30792474_SNP [dm6]	C	T	3.290e^-4	0.699	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
2L	15090517	2L_15090517_SNP [dm3] 2L_15090517_SNP [dm6]	A	G	3.291e^-4	0.699	INTRON CG15270
2R	8132843	2R_8132843_SNP [dm3] 2R_12245338_SNP [dm6]	T	A	3.297e^-4	0.699	UPSTREAM CG43244 INTERGENIC
2R	18542217	2R_18542217_SNP [dm3] 2R_22654712_SNP [dm6]	T	G	3.298e^-4	0.699	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG30196 & 2 others INTERGENIC	TF binding site mE1_TFBS_cad
2L	2045972	2L_2045972_SNP [dm3] 2L_2045972_SNP [dm6]	G	A	3.299e^-4	0.699	NON_SYNONYMOUS_CODING Kebab UPSTREAM CR45298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16033629	2L_16033629_SNP [dm3] 2L_16033629_SNP [dm6]	A	T	3.300e^-4	0.699	INTRON beat-Ic
3R	6105638	3R_6105638_DEL [dm3] 3R_10279916_DEL [dm6]	ATGACTCCA	A	3.318e^-4	0.699	INTRON CG43143
X	8628993	X_8628993_SNP [dm3] X_8734960_SNP [dm6]	G	A	3.319e^-4	0.699	INTERGENIC
3L	12068858	3L_12068858_SNP [dm3] 3L_12075758_SNP [dm6]	A	G	3.319e^-4	0.699	INTRON Sema-5c
3L	5705590	3L_5705590_SNP [dm3] 3L_5712490_SNP [dm6]	A	G	3.319e^-4	0.699	UPSTREAM CG44521 INTRON sif	TF binding site mE1_TFBS_chinmo
2R	10294490	2R_10294490_SNP [dm3] 2R_14406985_SNP [dm6]	G	A	3.320e^-4	0.699	INTERGENIC
3L	15728441	3L_15728441_SNP [dm3] 3L_15735341_SNP [dm6]	C	T	3.330e^-4	0.699	INTERGENIC
2L	17302629	2L_17302629_SNP [dm3] 2L_17302629_SNP [dm6]	G	A	3.331e^-4	0.699	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	14845226	X_14845226_SNP [dm3] X_14951193_SNP [dm6]	T	C	3.335e^-4	0.699	UTR_5_PRIME pdgy UPSTREAM pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	11576437	2R_11576437_SNP [dm3] 2R_15688932_SNP [dm6]	T	C	3.335e^-4	0.699	NON_SYNONYMOUS_CODING Cep89 UPSTREAM CG30090	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	10438077	X_10438077_SNP [dm3] X_10544044_SNP [dm6]	A	T	3.337e^-4	0.699	INTRON spri
3L	4842247	3L_4842247_SNP [dm3] 3L_4842247_SNP [dm6]	G	A	3.340e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25287731	3R_25287731_DEL [dm3] 3R_29462009_DEL [dm6]	CACACAC	C	3.341e^-4	0.699	UTR_5_PRIME Ptp99A INTRON Ptp99A	TF binding site BDTNP1_TFBS_twi
2R	1082079	2R_1082079_SNP [dm3] 2R_5194574_SNP [dm6]	T	A	3.343e^-4	0.699	INTRON Nipped-A	transposable element FlyBase
3L	5650459	3L_5650459_SNP [dm3] 3L_5657359_SNP [dm6]	C	G	3.344e^-4	0.699	UTR_3_PRIME lin-28 UPSTREAM sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	14157661	X_14157661_SNP [dm3] X_14263628_SNP [dm6]	C	T	3.355e^-4	0.699	SYNONYMOUS_CODING CG1461
X	11945098	X_11945098_SNP [dm3] X_12051065_SNP [dm6]	T	A	3.358e^-4	0.699	INTRON CR43960 & 1 other
3L	798006	3L_798006_SNP [dm3] 3L_798006_SNP [dm6]	G	A	3.362e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	14030411	3R_14030411_SNP [dm3] 3R_18204689_SNP [dm6]	G	A	3.370e^-4	0.699	INTRON CG7985
2L	19816601	2L_19816601_SNP [dm3] 2L_19816601_SNP [dm6]	G	T	3.372e^-4	0.699	UPSTREAM snRNA:U2:38ABa DOWNSTREAM snRNA:U5:38ABb INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	19127380	3R_19127380_SNP [dm3] 3R_23301658_SNP [dm6]	C	T	3.375e^-4	0.699	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	4766893	3L_4766893_SNP [dm3] 3L_4766893_SNP [dm6]	C	A	3.384e^-4	0.699	SYNONYMOUS_CODING RhoGEF64C	TF binding site mE1_TFBS_chinmo
3R	13582492	3R_13582492_SNP [dm3] 3R_17756770_SNP [dm6]	T	G	3.385e^-4	0.699	INTRON TyrR	TF binding site mE1_TFBS_chinmo
3L	14486927	3L_14486927_SNP [dm3] 3L_14493827_SNP [dm6]	G	C	3.390e^-4	0.699	INTRON bbg
2R	19553891	2R_19553891_SNP [dm3] 2R_23666368_SNP [dm6]	C	T	3.393e^-4	0.699	UPSTREAM Pde8 INTRON Pde8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	21851919	2L_21851919_INS [dm3] 2L_21851919_INS [dm6]	T	TTCT	3.398e^-4	0.699	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	9515094	3L_9515094_SNP [dm3] 3L_9521994_SNP [dm6]	T	A	3.398e^-4	0.699	INTRON CG33700
2R	14678570	2R_14678570_SNP [dm3] 2R_18791065_SNP [dm6]	C	T	3.399e^-4	0.699	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7902194	2R_7902194_SNP [dm3] 2R_12014689_SNP [dm6]	T	G	3.400e^-4	0.699	UPSTREAM CR44306 INTRON otk
X	15413680	X_15413680_SNP [dm3] X_15519647_SNP [dm6]	A	G	3.402e^-4	0.699	INTRON Ac13E
3L	4011471	3L_4011471_SNP [dm3] 3L_4011471_SNP [dm6]	A	C	3.404e^-4	0.699	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14944446	2R_14944446_SNP [dm3] 2R_19056941_SNP [dm6]	C	T	3.416e^-4	0.699	INTERGENIC
2L	939164	2L_939164_SNP [dm3] 2L_939164_SNP [dm6]	T	C	3.417e^-4	0.699	INTRON CG4341	TF binding site mE1_TFBS_chinmo
3L	8681778	3L_8681778_SNP [dm3] 3L_8688678_SNP [dm6]	A	C	3.420e^-4	0.699	INTERGENIC
2L	5557577	2L_5557577_SNP [dm3] 2L_5557577_SNP [dm6]	A	T	3.425e^-4	0.699	SPLICE_SITE_REGION GluRIIA INTRON GluRIIA
3R	10437640	3R_10437640_SNP [dm3] 3R_14611918_SNP [dm6]	A	T	3.431e^-4	0.699	INTRON CG14853
2R	13556691	2R_13556691_SNP [dm3] 2R_17669186_SNP [dm6]	G	T	3.433e^-4	0.699	UTR_3_PRIME eIF3-S8 UPSTREAM CG30108 & 1 other DOWNSTREAM eIF3-S8	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cnc
3R	15292424	3R_15292424_SNP [dm3] 3R_19466702_SNP [dm6]	T	G	3.438e^-4	0.699	INTRON Dys
3R	19435034	3R_19435034_SNP [dm3] 3R_23609312_SNP [dm6]	C	G	3.438e^-4	0.699	INTRON CG31145
2R	16923365	2R_16923365_SNP [dm3] 2R_21035860_SNP [dm6]	C	G	3.443e^-4	0.699	INTERGENIC
3R	23810709	3R_23810709_SNP [dm3] 3R_27984987_SNP [dm6]	T	C	3.447e^-4	0.699	INTRON betaTub97EF	insulator Insulator_Class_II.mE01
X	2281996	X_2281996_SNP [dm3] X_2387963_SNP [dm6]	T	G	3.450e^-4	0.699	UPSTREAM PsGEF INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9546282	3L_9546282_SNP [dm3] 3L_9553182_SNP [dm6]	A	T	3.469e^-4	0.699	UTR_5_PRIME CG42673
X	12264143	X_12264143_SNP [dm3] X_12370110_SNP [dm6]	C	A	3.470e^-4	0.699	INTERGENIC
2L	268796	2L_268796_DEL [dm3] 2L_268796_DEL [dm6]	AA	A	3.476e^-4	0.699	UPSTREAM CG3345 INTRON CG3645
3L	7721198	3L_7721198_SNP [dm3] 3L_7728098_SNP [dm6]	G	T	3.483e^-4	0.699	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_HSA
3L	8681804	3L_8681804_SNP [dm3] 3L_8688704_SNP [dm6]	A	C	3.495e^-4	0.699	INTERGENIC
X	18260542	X_18260542_SNP [dm3] X_18366509_SNP [dm6]	G	T	3.496e^-4	0.699	START_GAINED CrebB UTR_5_PRIME CrebB UPSTREAM CrebB	TF binding site BDTNP1_TFBS_dl
2L	17289541	2L_17289541_SNP [dm3] 2L_17289541_SNP [dm6]	C	T	3.497e^-4	0.699	INTERGENIC
2L	5559719	2L_5559719_SNP [dm3] 2L_5559719_SNP [dm6]	T	C	3.506e^-4	0.699	SYNONYMOUS_CODING GluRIIB DOWNSTREAM GluRIIA	TF binding site mE1_TFBS_inv
3R	4415784	3R_4415784_SNP [dm3] 3R_8590062_SNP [dm6]	C	T	3.507e^-4	0.699	INTRON 5-HT2B	TF binding site mE1_TFBS_cad
3R	4415796	3R_4415796_SNP [dm3] 3R_8590074_SNP [dm6]	C	A	3.507e^-4	0.699	INTRON 5-HT2B	TF binding site mE1_TFBS_cad
3L	7719704	3L_7719704_SNP [dm3] 3L_7726604_SNP [dm6]	G	A	3.515e^-4	0.699	UPSTREAM CG7457 INTRON CG32373	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14556612	3L_14556612_SNP [dm3] 3L_14563512_SNP [dm6]	A	G	3.516e^-4	0.699	DOWNSTREAM CG34039 INTERGENIC	TF binding site mE1_TFBS_Kr
3R	16890622	3R_16890622_SNP [dm3] 3R_21064900_SNP [dm6]	G	A	3.518e^-4	0.699	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
2L	19825513	2L_19825513_DEL [dm3] 2L_19825513_DEL [dm6]	TT	T	3.519e^-4	0.699	UPSTREAM sick INTRON sick
3L	7470072	3L_7470072_SNP [dm3] 3L_7476972_SNP [dm6]	T	A	3.520e^-4	0.699	DOWNSTREAM CG43292 INTERGENIC
X	12273768	X_12273768_SNP [dm3] X_12379735_SNP [dm6]	G	C	3.521e^-4	0.699	INTERGENIC
3L	15637084	3L_15637084_SNP [dm3] 3L_15643984_SNP [dm6]	A	C	3.522e^-4	0.699	INTRON comm3
2R	10588016	2R_10588016_SNP [dm3] 2R_14700511_SNP [dm6]	G	A	3.526e^-4	0.699	INTRON mspo
2L	21896969	2L_21896969_SNP [dm3] 2L_21896969_SNP [dm6]	A	C	3.533e^-4	0.699	SYNONYMOUS_CODING CG11629	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	17282974	2L_17282974_SNP [dm3] 2L_17282974_SNP [dm6]	T	G	3.549e^-4	0.699	INTERGENIC
3R	16890626	3R_16890626_SNP [dm3] 3R_21064904_SNP [dm6]	A	T	3.557e^-4	0.699	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3R	4415773	3R_4415773_SNP [dm3] 3R_8590051_SNP [dm6]	G	T	3.564e^-4	0.699	INTRON 5-HT2B	TF binding site mE1_TFBS_cad
3L	2705297	3L_2705297_SNP [dm3] 3L_2705297_SNP [dm6]	C	T	3.567e^-4	0.699	INTRON Fife
2R	7755171	2R_7755171_SNP [dm3] 2R_11867666_SNP [dm6]	A	G	3.570e^-4	0.699	DOWNSTREAM CG13185 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
X	8633311	X_8633311_SNP [dm3] X_8739278_SNP [dm6]	A	G	3.571e^-4	0.699	INTERGENIC
2R	10096977	2R_10096977_SNP [dm3] 2R_14209472_SNP [dm6]	C	T	3.573e^-4	0.699	INTRON Sox15	regulatory region REDfly_CRMs
3R	17347161	3R_17347161_SNP [dm3] 3R_21521439_SNP [dm6]	C	T	3.579e^-4	0.699	INTRON CG7956	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	8698764	2L_8698764_SNP [dm3] 2L_8698764_SNP [dm6]	A	G	3.586e^-4	0.699	INTRON Hnf4
3R	26671686	3R_26671686_SNP [dm3] 3R_30845964_SNP [dm6]	T	A	3.589e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	16341636	X_16341636_DEL [dm3] X_16447603_DEL [dm6]	TGACAGCGCGCGAGTACAA...	T	3.592e^-4	0.699	UTR_3_PRIME CG34015 UPSTREAM eIF-2alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8222268	X_8222268_SNP [dm3] X_8328235_SNP [dm6]	A	T	3.597e^-4	0.699	INTRON nAChRalpha3
X	11121667	X_11121667_SNP [dm3] X_11227634_SNP [dm6]	T	C	3.605e^-4	0.699	INTRON CG44422
2L	17282977	2L_17282977_SNP [dm3] 2L_17282977_SNP [dm6]	A	T	3.614e^-4	0.699	INTERGENIC
3L	18542911	3L_18542911_SNP [dm3] 3L_18549811_SNP [dm6]	C	A	3.617e^-4	0.699	INTERGENIC
3R	9585926	3R_9585926_SNP [dm3] 3R_13760204_SNP [dm6]	A	G	3.622e^-4	0.699	INTRON CG34383
2L	16180475	2L_16180475_SNP [dm3] 2L_16180475_SNP [dm6]	T	A	3.622e^-4	0.699	INTRON Ca-alpha1D
3R	22618986	3R_22618986_SNP [dm3] 3R_26793264_SNP [dm6]	A	T	3.624e^-4	0.699	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22153955	3R_22153955_SNP [dm3] 3R_26328233_SNP [dm6]	A	T	3.626e^-4	0.699	INTRON CG33970
X	17259658	X_17259658_SNP [dm3] X_17365625_SNP [dm6]	T	C	3.627e^-4	0.699	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	7321694	3R_7321694_SNP [dm3] 3R_11495972_SNP [dm6]	T	C	3.629e^-4	0.699	INTERGENIC
2L	3523992	2L_3523992_SNP [dm3] 2L_3523992_SNP [dm6]	C	A	3.631e^-4	0.699	UTR_5_PRIME Sr-CIV
X	16890200	X_16890200_SNP [dm3] X_16996167_SNP [dm6]	A	T	3.632e^-4	0.699	INTRON CG45002
3L	3966428	3L_3966428_SNP [dm3] 3L_3966428_SNP [dm6]	C	A	3.633e^-4	0.699	INTERGENIC
2R	11872612	2R_11872612_SNP [dm3] 2R_15985107_SNP [dm6]	T	C	3.637e^-4	0.699	SYNONYMOUS_CODING Strn-Mlck
2L	8807137	2L_8807137_SNP [dm3] 2L_8807137_SNP [dm6]	T	C	3.642e^-4	0.699	INTERGENIC
2L	14749130	2L_14749130_SNP [dm3] 2L_14749130_SNP [dm6]	G	A	3.644e^-4	0.699	INTERGENIC
2L	19821796	2L_19821796_SNP [dm3] 2L_19821796_SNP [dm6]	C	A	3.645e^-4	0.699	INTRON sick
2L	18328109	2L_18328109_SNP [dm3] 2L_18328109_SNP [dm6]	C	G	3.648e^-4	0.699	INTRON Fas3
2L	13876154	2L_13876154_SNP [dm3] 2L_13876154_SNP [dm6]	G	A	3.649e^-4	0.699	INTRON CenG1A
2R	9493789	2R_9493789_SNP [dm3] 2R_13606284_SNP [dm6]	G	A	3.652e^-4	0.699	UPSTREAM CG34236 INTERGENIC
2L	378373	2L_378373_SNP [dm3] 2L_378373_SNP [dm6]	A	T	3.653e^-4	0.699	UTR_5_PRIME al	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
X	6451169	X_6451169_SNP [dm3] X_6557136_SNP [dm6]	A	T	3.655e^-4	0.699	SYNONYMOUS_CODING CG34417 INTRON CG34417
X	7613255	X_7613255_SNP [dm3] X_7719222_SNP [dm6]	T	C	3.656e^-4	0.699	INTERGENIC
3R	17823921	3R_17823921_SNP [dm3] 3R_21998199_SNP [dm6]	C	T	3.657e^-4	0.699	INTRON Eip93F
X	7619303	X_7619303_SNP [dm3] X_7725270_SNP [dm6]	A	C	3.662e^-4	0.699	NON_SYNONYMOUS_CODING Hira DOWNSTREAM NELF-B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	21775574	2L_21775574_INS [dm3] 2L_21775574_INS [dm6]	A	ATC	3.668e^-4	0.699	INTRON CG31612	TF binding site mE1_TFBS_HSA transposable element FlyBase
3R	23141761	3R_23141761_INS [dm3] 3R_27316039_INS [dm6]	G	GG	3.676e^-4	0.699	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	6994158	X_6994158_SNP [dm3] X_7100125_SNP [dm6]	A	G	3.679e^-4	0.699	SYNONYMOUS_CODING CG4615	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6534172	2L_6534172_SNP [dm3] 2L_6534172_SNP [dm6]	C	T	3.681e^-4	0.699	INTRON eya	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	12078185	2R_12078185_SNP [dm3] 2R_16190680_SNP [dm6]	C	A	3.683e^-4	0.699	NON_SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5970480	2R_5970480_SNP [dm3] 2R_10082975_SNP [dm6]	C	T	3.686e^-4	0.699	SPLICE_SITE_REGION egr INTRON egr
3L	2645886	3L_2645886_SNP [dm3] 3L_2645886_SNP [dm6]	C	A	3.687e^-4	0.699	NON_SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	709537	3L_709537_SNP [dm3] 3L_709537_SNP [dm6]	A	T	3.700e^-4	0.699	INTRON CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
2L	606477	2L_606477_SNP [dm3] 2L_606477_SNP [dm6]	A	G	3.709e^-4	0.699	DOWNSTREAM CR43648 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19317545	2R_19317545_SNP [dm3] 2R_23430022_SNP [dm6]	G	T	3.712e^-4	0.699	INTRON CG9815
3R	27142002	3R_27142002_SNP [dm3] 3R_31316280_SNP [dm6]	A	G	3.714e^-4	0.699	INTRON CG34347
3R	19921621	3R_19921621_SNP [dm3] 3R_24095899_SNP [dm6]	G	A	3.716e^-4	0.699	INTRON 4EHP
2R	15896571	2R_15896571_SNP [dm3] 2R_20009066_SNP [dm6]	C	A	3.717e^-4	0.699	INTERGENIC
2L	10258426	2L_10258426_SNP [dm3] 2L_10258426_SNP [dm6]	A	G	3.720e^-4	0.699	INTRON Pten
2L	14043664	2L_14043664_SNP [dm3] 2L_14043664_SNP [dm6]	T	C	3.721e^-4	0.699	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4625346	2L_4625346_SNP [dm3] 2L_4625346_SNP [dm6]	T	C	3.724e^-4	0.699	INTERGENIC
3R	11781657	3R_11781657_SNP [dm3] 3R_15955935_SNP [dm6]	A	G	3.728e^-4	0.699	INTRON Sap47
3L	20176231	3L_20176231_SNP [dm3] 3L_20183131_SNP [dm6]	T	A	3.733e^-4	0.699	INTRON CG42674	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17455391	3L_17455391_SNP [dm3] 3L_17462291_SNP [dm6]	C	T	3.735e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	7879067	X_7879067_SNP [dm3] X_7985034_SNP [dm6]	T	C	3.738e^-4	0.699	SYNONYMOUS_CODING sn
3R	20913923	3R_20913923_SNP [dm3] 3R_25088201_SNP [dm6]	G	T	3.738e^-4	0.699	INTERGENIC
2L	2021719	2L_2021719_SNP [dm3] 2L_2021719_SNP [dm6]	G	A	3.741e^-4	0.699	INTRON CG4238
2L	387696	2L_387696_SNP [dm3] 2L_387696_SNP [dm6]	T	A	3.742e^-4	0.699	DOWNSTREAM al INTERGENIC
X	7617570	X_7617570_SNP [dm3] X_7723537_SNP [dm6]	C	A	3.744e^-4	0.699	SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	7719844	3L_7719844_SNP [dm3] 3L_7726744_SNP [dm6]	A	T	3.744e^-4	0.699	UPSTREAM CG7457 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21406757	3R_21406757_SNP [dm3] 3R_25581035_SNP [dm6]	A	G	3.746e^-4	0.699	DOWNSTREAM CG4582 INTRON msi
3R	21406758	3R_21406758_SNP [dm3] 3R_25581036_SNP [dm6]	C	A	3.746e^-4	0.699	DOWNSTREAM CG4582 INTRON msi
2L	5136849	2L_5136849_SNP [dm3] 2L_5136849_SNP [dm6]	T	C	3.752e^-4	0.699	SYNONYMOUS_CODING Msp300 INTRON Msp300
X	9410218	X_9410218_SNP [dm3] X_9516185_SNP [dm6]	T	C	3.766e^-4	0.699	INTRON CG32700
2L	5557570	2L_5557570_SNP [dm3] 2L_5557570_SNP [dm6]	T	A	3.771e^-4	0.699	INTRON GluRIIA
3R	26669113	3R_26669113_SNP [dm3] 3R_30843391_SNP [dm6]	A	T	3.780e^-4	0.699	INTERGENIC	TF binding site mE1_TFBS_cad
X	13739147	X_13739147_SNP [dm3] X_13845114_SNP [dm6]	A	G	3.782e^-4	0.699	INTRON AMPdeam	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu
3L	8590702	3L_8590702_SNP [dm3] 3L_8597602_SNP [dm6]	G	A	3.784e^-4	0.699	NON_SYNONYMOUS_CODING CG43078	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12435444	3L_12435444_SNP [dm3] 3L_12442344_SNP [dm6]	C	A	3.793e^-4	0.699	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16823020	3L_16823020_DEL [dm3] 3L_16829920_DEL [dm6]	TGCAGTTTTGCAAT...	T	3.793e^-4	0.699	UPSTREAM CG13024 INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.750e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.09942
In_3R_K	0.05881

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	5.9477	0.0511

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2136 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	3680402	3L_3680402_SNP [dm3] 3L_3680402_SNP [dm6]	T	C	3.010e^-7	0.534	INTERGENIC
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	9.993e^-7	0.534	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27128046	3R_27128046_SNP [dm3] 3R_31302324_SNP [dm6]	C	T	1.016e^-6	0.534	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_inv
2R	15697740	2R_15697740_SNP [dm3] 2R_19810235_SNP [dm6]	T	G	1.139e^-6	0.534	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	18464186	X_18464186_SNP [dm3] X_18570153_SNP [dm6]	C	A	1.616e^-6	0.593	INTRON Bx	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
2R	12696827	2R_12696827_SNP [dm3] 2R_16809322_SNP [dm6]	C	A	1.897e^-6	0.593	INTERGENIC
2L	7202015	2L_7202015_SNP [dm3] 2L_7202015_SNP [dm6]	C	A	2.434e^-6	0.652	INTRON CG4502
3L	14813948	3L_14813948_SNP [dm3] 3L_14820848_SNP [dm6]	G	A	3.770e^-6	0.759	INTRON CG17839
3L	2645081	3L_2645081_SNP [dm3] 3L_2645081_SNP [dm6]	A	G	4.266e^-6	0.759	UPSTREAM CG1143 INTERGENIC
2L	3997257	2L_3997257_INS [dm3] 2L_3997257_INS [dm6]	T	TGA	4.659e^-6	0.759	INTERGENIC
3L	14376180	3L_14376180_SNP [dm3] 3L_14383080_SNP [dm6]	C	T	5.772e^-6	0.759	UTR_3_PRIME CG43120
2L	7202010	2L_7202010_SNP [dm3] 2L_7202010_SNP [dm6]	C	T	6.039e^-6	0.759	INTRON CG4502
2L	7202011	2L_7202011_SNP [dm3] 2L_7202011_SNP [dm6]	G	A	6.168e^-6	0.759	INTRON CG4502
3R	13570329	3R_13570329_SNP [dm3] 3R_17744607_SNP [dm6]	A	C	6.572e^-6	0.759	INTRON TyrRII	TF binding site mE1_TFBS_cad
X	18463732	X_18463732_SNP [dm3] X_18569699_SNP [dm6]	A	G	7.027e^-6	0.759	INTRON Bx	TF binding site BDTNP1_TFBS_da
3L	2645067	3L_2645067_SNP [dm3] 3L_2645067_SNP [dm6]	C	T	7.304e^-6	0.759	UPSTREAM CG1143 INTERGENIC
2R	6795339	2R_6795339_SNP [dm3] 2R_10907834_SNP [dm6]	G	T	7.806e^-6	0.759	INTERGENIC
3L	7777439	3L_7777439_SNP [dm3] 3L_7784339_SNP [dm6]	C	T	8.054e^-6	0.759	INTRON CG32369
3L	11276731	3L_11276731_SNP [dm3] 3L_11283631_SNP [dm6]	A	G	8.823e^-6	0.759	INTERGENIC
3L	2644985	3L_2644985_SNP [dm3] 3L_2644985_SNP [dm6]	T	A	9.640e^-6	0.759	UPSTREAM CG1143 INTERGENIC
3L	11276715	3L_11276715_SNP [dm3] 3L_11283615_SNP [dm6]	A	C	9.655e^-6	0.759	INTERGENIC
3L	11276725	3L_11276725_SNP [dm3] 3L_11283625_SNP [dm6]	A	T	9.655e^-6	0.759	INTERGENIC
3L	8391972	3L_8391972_SNP [dm3] 3L_8398872_SNP [dm6]	A	T	9.721e^-6	0.759	INTRON CG7120
2R	6795340	2R_6795340_SNP [dm3] 2R_10907835_SNP [dm6]	A	G	9.783e^-6	0.759	INTERGENIC
3L	18663595	3L_18663595_SNP [dm3] 3L_18670495_SNP [dm6]	T	C	1.012e^-5	0.759	SYNONYMOUS_CODING Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	7613485	X_7613485_SNP [dm3] X_7719452_SNP [dm6]	G	A	1.100e^-5	0.793	INTERGENIC
2R	13950559	2R_13950559_SNP [dm3] 2R_18063054_SNP [dm6]	A	T	1.300e^-5	0.801	INTRON CG34386
3L	8391974	3L_8391974_SNP [dm3] 3L_8398874_SNP [dm6]	G	A	1.333e^-5	0.801	INTRON CG7120
3R	6253276	3R_6253276_SNP [dm3] 3R_10427554_SNP [dm6]	G	A	1.368e^-5	0.801	INTERGENIC
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	1.449e^-5	0.801	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11277473	3L_11277473_SNP [dm3] 3L_11284373_SNP [dm6]	G	A	1.472e^-5	0.801	UPSTREAM CR45404 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	17333598	2L_17333598_SNP [dm3] 2L_17333598_SNP [dm6]	G	A	1.491e^-5	0.801	INTERGENIC
2R	7961237	2R_7961237_SNP [dm3] 2R_12073732_SNP [dm6]	G	A	1.538e^-5	0.801	INTRON CG8888
3L	7072423	3L_7072423_SNP [dm3] 3L_7079323_SNP [dm6]	C	A	1.661e^-5	0.801	INTERGENIC
3L	2645044	3L_2645044_SNP [dm3] 3L_2645044_SNP [dm6]	T	G	1.689e^-5	0.801	UPSTREAM CG1143 INTERGENIC
2R	11251263	2R_11251263_SNP [dm3] 2R_15363758_SNP [dm6]	T	A	1.692e^-5	0.801	INTRON unc-5
X	14154319	X_14154319_SNP [dm3] X_14260286_SNP [dm6]	G	C	1.700e^-5	0.801	UPSTREAM CG1461 INTERGENIC
2L	7365708	2L_7365708_SNP [dm3] 2L_7365708_SNP [dm6]	C	T	1.724e^-5	0.801	INTRON Wnt10
3R	22141543	3R_22141543_SNP [dm3] 3R_26315821_SNP [dm6]	T	A	1.794e^-5	0.801	INTERGENIC
2R	12400793	2R_12400793_SNP [dm3] 2R_16513288_SNP [dm6]	C	G	1.882e^-5	0.801	INTRON Sema-2a
3R	13600672	3R_13600672_SNP [dm3] 3R_17774950_SNP [dm6]	C	T	1.902e^-5	0.801	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12971257	3R_12971257_SNP [dm3] 3R_17145535_SNP [dm6]	A	C	1.975e^-5	0.801	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3R	12971260	3R_12971260_DEL [dm3] 3R_17145538_DEL [dm6]	AGGTAAGCATCCTA...	G	1.975e^-5	0.801	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
2R	7961258	2R_7961258_SNP [dm3] 2R_12073753_SNP [dm6]	A	G	1.989e^-5	0.801	INTRON CG8888
3L	3090995	3L_3090995_SNP [dm3] 3L_3090995_SNP [dm6]	C	T	2.048e^-5	0.801	UTR_3_PRIME Cht7 DOWNSTREAM CG11486 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	2645600	3L_2645600_SNP [dm3] 3L_2645600_SNP [dm6]	A	T	2.051e^-5	0.801	INTRON CG1143	TF binding site mE1_TFBS_cad
X	12772793	X_12772793_SNP [dm3] X_12878760_SNP [dm6]	T	A	2.129e^-5	0.801	INTRON Pde9
3L	2645041	3L_2645041_SNP [dm3] 3L_2645041_SNP [dm6]	G	T	2.179e^-5	0.801	UPSTREAM CG1143 INTERGENIC
3L	2644981	3L_2644981_SNP [dm3] 3L_2644981_SNP [dm6]	A	T	2.262e^-5	0.801	UPSTREAM CG1143 INTERGENIC
X	7623480	X_7623480_SNP [dm3] X_7729447_SNP [dm6]	A	G	2.300e^-5	0.801	INTRON CG12155	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	11599845	3L_11599845_SNP [dm3] 3L_11606745_SNP [dm6]	T	C	2.353e^-5	0.801	SYNONYMOUS_CODING CG6091
3L	9661340	3L_9661340_SNP [dm3] 3L_9668240_SNP [dm6]	C	G	2.371e^-5	0.801	INTRON fry	TF binding site mE1_TFBS_cad
2R	11177864	2R_11177864_SNP [dm3] 2R_15290359_SNP [dm6]	A	G	2.400e^-5	0.801	INTRON Trpm
3R	4934321	3R_4934321_SNP [dm3] 3R_9108599_SNP [dm6]	G	A	2.625e^-5	0.801	INTRON pum
3L	10756244	3L_10756244_SNP [dm3] 3L_10763144_SNP [dm6]	A	G	2.636e^-5	0.801	INTERGENIC
X	2926031	X_2926031_SNP [dm3] X_3031998_SNP [dm6]	C	A	2.655e^-5	0.801	INTRON kirre
3L	16983394	3L_16983394_SNP [dm3] 3L_16990294_SNP [dm6]	C	A	2.667e^-5	0.801	INTRON Exn
3L	18662988	3L_18662988_INS [dm3] 3L_18669888_INS [dm6]	G	GCTG	2.706e^-5	0.801	CODON_INSERTION Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	18909679	3R_18909679_SNP [dm3] 3R_23083957_SNP [dm6]	C	A	2.731e^-5	0.801	INTRON CG13830	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9959340	3R_9959340_SNP [dm3] 3R_14133618_SNP [dm6]	C	T	2.803e^-5	0.801	INTERGENIC
X	3381344	X_3381344_SNP [dm3] X_3487311_SNP [dm6]	T	C	2.875e^-5	0.801	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_sens
2L	7202014	2L_7202014_SNP [dm3] 2L_7202014_SNP [dm6]	C	A	2.909e^-5	0.801	INTRON CG4502
X	18464310	X_18464310_SNP [dm3] X_18570277_SNP [dm6]	C	T	3.139e^-5	0.801	INTRON Bx	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
X	3380974	X_3380974_SNP [dm3] X_3486941_SNP [dm6]	G	A	3.170e^-5	0.801	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3381085	X_3381085_SNP [dm3] X_3487052_SNP [dm6]	G	C	3.170e^-5	0.801	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6100247	3L_6100247_SNP [dm3] 3L_6107147_SNP [dm6]	C	T	3.248e^-5	0.801	INTRON Ets65A	TF binding site mE1_TFBS_cad
2R	12696341	2R_12696341_SNP [dm3] 2R_16808836_SNP [dm6]	C	T	3.411e^-5	0.801	INTERGENIC
3L	2683655	3L_2683655_SNP [dm3] 3L_2683655_SNP [dm6]	A	G	3.428e^-5	0.801	INTRON Fife
3L	742989	3L_742989_SNP [dm3] 3L_742989_SNP [dm6]	C	A	3.521e^-5	0.801	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	5544938	2L_5544938_SNP [dm3] 2L_5544938_SNP [dm6]	A	T	3.552e^-5	0.801	SYNONYMOUS_CODING Lam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	13415564	2R_13415564_SNP [dm3] 2R_17528059_SNP [dm6]	G	A	3.593e^-5	0.801	SYNONYMOUS_CODING Patronin
2L	2669602	2L_2669602_SNP [dm3] 2L_2669602_SNP [dm6]	G	T	3.624e^-5	0.801	UPSTREAM Gr23a INTERGENIC
3L	16983298	3L_16983298_INS [dm3] 3L_16990198_INS [dm6]	A	AG	3.635e^-5	0.801	INTRON Exn
3L	7726328	3L_7726328_SNP [dm3] 3L_7733228_SNP [dm6]	T	C	3.676e^-5	0.801	DOWNSTREAM Snmp2 INTRON CG32373
3L	2645026	3L_2645026_SNP [dm3] 3L_2645026_SNP [dm6]	T	A	3.708e^-5	0.801	UPSTREAM CG1143 INTERGENIC
2R	11278216	2R_11278216_SNP [dm3] 2R_15390711_SNP [dm6]	T	C	3.741e^-5	0.801	INTERGENIC
X	21160839	X_21160839_SNP [dm3] X_21289812_SNP [dm6]	T	C	3.826e^-5	0.801	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	743080	3L_743080_SNP [dm3] 3L_743080_SNP [dm6]	T	A	3.900e^-5	0.801	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	21160844	X_21160844_SNP [dm3] X_21289817_SNP [dm6]	G	C	4.071e^-5	0.801	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20396321	3R_20396321_SNP [dm3] 3R_24570599_SNP [dm6]	T	A	4.168e^-5	0.801	INTRON CG13624
X	17014026	X_17014026_SNP [dm3] X_17119993_SNP [dm6]	C	T	4.180e^-5	0.801	INTRON CG5004
3R	5137887	3R_5137887_SNP [dm3] 3R_9312165_SNP [dm6]	A	G	4.197e^-5	0.801	INTRON CG8861
2R	3188996	2R_3188996_SNP [dm3] 2R_7301491_SNP [dm6]	T	A	4.235e^-5	0.801	DOWNSTREAM pwn INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2279895	2L_2279895_SNP [dm3] 2L_2279895_SNP [dm6]	G	A	4.375e^-5	0.801	UPSTREAM CR43753 INTERGENIC
2R	10998493	2R_10998493_SNP [dm3] 2R_15110988_SNP [dm6]	A	G	4.404e^-5	0.801	INTERGENIC
3L	13310290	3L_13310290_SNP [dm3] 3L_13317190_SNP [dm6]	T	G	4.467e^-5	0.801	INTERGENIC
2R	19007092	2R_19007092_SNP [dm3] 2R_23119569_SNP [dm6]	G	T	4.512e^-5	0.801	INTERGENIC
3R	26700759	3R_26700759_SNP [dm3] 3R_30875037_SNP [dm6]	G	C	4.534e^-5	0.801	SYNONYMOUS_CODING CG15546	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	4.605e^-5	0.801	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
3L	4737896	3L_4737896_SNP [dm3] 3L_4737896_SNP [dm6]	G	A	4.638e^-5	0.801	INTRON RhoGEF64C
3L	14835265	3L_14835265_SNP [dm3] 3L_14842165_SNP [dm6]	T	C	4.660e^-5	0.801	INTRON CG17839
3L	4737895	3L_4737895_SNP [dm3] 3L_4737895_SNP [dm6]	A	G	4.708e^-5	0.801	INTRON RhoGEF64C
3L	4737859	3L_4737859_SNP [dm3] 3L_4737859_SNP [dm6]	A	G	4.726e^-5	0.801	INTRON RhoGEF64C
3L	4534444	3L_4534444_SNP [dm3] 3L_4534444_SNP [dm6]	C	A	4.754e^-5	0.801	INTRON CG11353
2R	14452456	2R_14452456_SNP [dm3] 2R_18564951_SNP [dm6]	G	A	4.847e^-5	0.801	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10196368	3R_10196368_SNP [dm3] 3R_14370646_SNP [dm6]	T	A	4.876e^-5	0.801	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10785598	2L_10785598_SNP [dm3] 2L_10785598_SNP [dm6]	A	T	4.903e^-5	0.801	INTRON CG31869 EXON CR44582
X	3380537	X_3380537_SNP [dm3] X_3486504_SNP [dm6]	A	G	4.904e^-5	0.801	NON_SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_sens
3L	14816170	3L_14816170_SNP [dm3] 3L_14823070_SNP [dm6]	A	T	4.959e^-5	0.801	INTRON CG17839
2L	16619019	2L_16619019_SNP [dm3] 2L_16619019_SNP [dm6]	T	A	4.969e^-5	0.801	INTRON CG42389	TF binding site BDTNP1_TFBS_dl
3L	1103387	3L_1103387_SNP [dm3] 3L_1103387_SNP [dm6]	C	T	5.060e^-5	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	21921535	2L_21921535_SNP [dm3] 2L_21921535_SNP [dm6]	T	C	5.065e^-5	0.801	INTERGENIC
2R	13739800	2R_13739800_SNP [dm3] 2R_17852295_SNP [dm6]	G	T	5.168e^-5	0.801	UPSTREAM CG30323 INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3680449	3L_3680449_SNP [dm3] 3L_3680449_SNP [dm6]	G	A	5.244e^-5	0.801	INTERGENIC	TF binding site mE1_TFBS_cad
2R	10998512	2R_10998512_SNP [dm3] 2R_15111007_SNP [dm6]	G	T	5.248e^-5	0.801	INTERGENIC
2R	12456090	2R_12456090_SNP [dm3] 2R_16568585_SNP [dm6]	G	A	5.265e^-5	0.801	SYNONYMOUS_CODING CG4945	TF binding site mE1_TFBS_cad
2R	12400940	2R_12400940_SNP [dm3] 2R_16513435_SNP [dm6]	T	C	5.288e^-5	0.801	INTRON Sema-2a
2R	10998491	2R_10998491_SNP [dm3] 2R_15110986_SNP [dm6]	A	G	5.289e^-5	0.801	INTERGENIC
3R	13600041	3R_13600041_SNP [dm3] 3R_17774319_SNP [dm6]	C	T	5.330e^-5	0.801	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
2L	8619047	2L_8619047_SNP [dm3] 2L_8619047_SNP [dm6]	C	T	5.342e^-5	0.801	UPSTREAM tRNA:CR31602 INTRON Sema-1a
3L	9661317	3L_9661317_SNP [dm3] 3L_9668217_SNP [dm6]	A	G	5.377e^-5	0.801	INTRON fry	TF binding site mE1_TFBS_cad
2R	10998501	2R_10998501_SNP [dm3] 2R_15110996_SNP [dm6]	T	G	5.428e^-5	0.801	INTERGENIC
3L	4841343	3L_4841343_SNP [dm3] 3L_4841343_SNP [dm6]	A	C	5.552e^-5	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	5888622	3L_5888622_SNP [dm3] 3L_5895522_SNP [dm6]	G	T	5.555e^-5	0.801	DOWNSTREAM Pole2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13415561	2R_13415561_SNP [dm3] 2R_17528056_SNP [dm6]	A	G	5.557e^-5	0.801	SYNONYMOUS_CODING Patronin
2R	19024849	2R_19024849_SNP [dm3] 2R_23137326_SNP [dm6]	T	G	5.579e^-5	0.801	INTERGENIC
2L	20860404	2L_20860404_SNP [dm3] 2L_20860404_SNP [dm6]	C	T	5.589e^-5	0.801	INTRON CG9336
2L	8697403	2L_8697403_SNP [dm3] 2L_8697403_SNP [dm6]	T	G	5.610e^-5	0.801	INTRON Hnf4
2R	7961037	2R_7961037_SNP [dm3] 2R_12073532_SNP [dm6]	G	A	5.625e^-5	0.801	INTRON CG8888
3L	6100199	3L_6100199_SNP [dm3] 3L_6107099_SNP [dm6]	C	T	5.626e^-5	0.801	INTRON Ets65A	TF binding site mE1_TFBS_cad
X	2926734	X_2926734_SNP [dm3] X_3032701_SNP [dm6]	C	A	5.670e^-5	0.801	INTRON kirre
X	3110950	X_3110950_SNP [dm3] X_3216917_SNP [dm6]	A	C	5.716e^-5	0.801	INTRON dnc
2R	4950454	2R_4950454_SNP [dm3] 2R_9062949_SNP [dm6]	G	A	5.725e^-5	0.801	INTRON ana	regulatory region REDfly_CRMs
3L	743033	3L_743033_SNP [dm3] 3L_743033_SNP [dm6]	C	T	5.757e^-5	0.801	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	18758721	3R_18758721_SNP [dm3] 3R_22932999_SNP [dm6]	G	A	5.766e^-5	0.801	INTRON klg
2R	14646889	2R_14646889_SNP [dm3] 2R_18759384_SNP [dm6]	C	T	5.823e^-5	0.801	SPLICE_SITE_REGION Jabba INTRON Jabba
2R	5970480	2R_5970480_SNP [dm3] 2R_10082975_SNP [dm6]	C	T	5.921e^-5	0.801	SPLICE_SITE_REGION egr INTRON egr
X	12850971	X_12850971_SNP [dm3] X_12956938_SNP [dm6]	G	T	5.930e^-5	0.801	INTRON hec
3L	7156753	3L_7156753_SNP [dm3] 3L_7163653_SNP [dm6]	G	A	5.950e^-5	0.801	INTRON Dscam2
3L	7156769	3L_7156769_SNP [dm3] 3L_7163669_SNP [dm6]	G	A	5.950e^-5	0.801	INTRON Dscam2
2L	3832016	2L_3832016_SNP [dm3] 2L_3832016_SNP [dm6]	G	A	5.988e^-5	0.801	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE
2R	18542315	2R_18542315_SNP [dm3] 2R_22654810_SNP [dm6]	A	T	6.012e^-5	0.801	UTR_3_PRIME CG30196 UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other	TF binding site mE1_TFBS_cad
3R	4342921	3R_4342921_SNP [dm3] 3R_8517199_SNP [dm6]	C	T	6.117e^-5	0.801	UPSTREAM CG11737 INTERGENIC
3L	17460040	3L_17460040_INS [dm3] 3L_17466940_INS [dm6]	T	GG	6.146e^-5	0.801	DOWNSTREAM CG7603 INTERGENIC
X	16847578	X_16847578_SNP [dm3] X_16953545_SNP [dm6]	T	C	6.149e^-5	0.801	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16890622	3R_16890622_SNP [dm3] 3R_21064900_SNP [dm6]	G	A	6.189e^-5	0.801	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3L	14555445	3L_14555445_SNP [dm3] 3L_14562345_SNP [dm6]	A	T	6.254e^-5	0.801	INTRON CG34039	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
2L	7201933	2L_7201933_SNP [dm3] 2L_7201933_SNP [dm6]	T	A	6.280e^-5	0.801	INTRON CG4502
3L	11791042	3L_11791042_SNP [dm3] 3L_11797942_SNP [dm6]	A	G	6.285e^-5	0.801	SYNONYMOUS_CODING Klp68D	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	9814806	X_9814806_DEL [dm3] X_9920773_DEL [dm6]	TT	T	6.302e^-5	0.801	INTERGENIC
2R	7157527	2R_7157527_SNP [dm3] 2R_11270022_SNP [dm6]	A	G	6.316e^-5	0.801	SYNONYMOUS_CODING Cpr47Ef	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15281202	2L_15281202_DEL [dm3] 2L_15281202_DEL [dm6]	CC	T	6.377e^-5	0.801	DOWNSTREAM CR45349 INTERGENIC
2L	15090507	2L_15090507_SNP [dm3] 2L_15090507_SNP [dm6]	T	C	6.416e^-5	0.801	INTRON CG15270
3R	5145048	3R_5145048_SNP [dm3] 3R_9319326_SNP [dm6]	G	A	6.449e^-5	0.801	INTRON CG8861
2L	8696998	2L_8696998_SNP [dm3] 2L_8696998_SNP [dm6]	C	G	6.530e^-5	0.801	INTRON Hnf4	TF binding site mE1_TFBS_cnc
3L	1610355	3L_1610355_SNP [dm3] 3L_1610355_SNP [dm6]	C	A	6.645e^-5	0.801	DOWNSTREAM CG12105 INTRON CG33791 & 1 other
2R	11278234	2R_11278234_SNP [dm3] 2R_15390729_SNP [dm6]	C	G	6.728e^-5	0.801	INTERGENIC
3L	2646789	3L_2646789_SNP [dm3] 3L_2646789_SNP [dm6]	T	G	6.898e^-5	0.801	UTR_3_PRIME CG1143 DOWNSTREAM CG1143
3L	18575735	3L_18575735_SNP [dm3] 3L_18582635_SNP [dm6]	C	A	6.951e^-5	0.801	UPSTREAM CR45435 INTERGENIC
3L	743046	3L_743046_SNP [dm3] 3L_743046_SNP [dm6]	A	T	6.959e^-5	0.801	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	743084	3L_743084_INS [dm3] 3L_743084_INS [dm6]	T	TT	6.960e^-5	0.801	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	16890626	3R_16890626_SNP [dm3] 3R_21064904_SNP [dm6]	A	T	6.985e^-5	0.801	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3L	5886015	3L_5886015_SNP [dm3] 3L_5892915_SNP [dm6]	C	G	7.102e^-5	0.801	INTERGENIC
X	2310890	X_2310890_SNP [dm3] X_2416857_SNP [dm6]	C	G	7.103e^-5	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14560642	3L_14560642_SNP [dm3] 3L_14567542_SNP [dm6]	C	A	7.109e^-5	0.801	INTRON CG42758
2R	16265606	2R_16265606_SNP [dm3] 2R_20378101_SNP [dm6]	C	A	7.129e^-5	0.801	INTERGENIC
2R	16289150	2R_16289150_SNP [dm3] 2R_20401645_SNP [dm6]	G	A	7.133e^-5	0.801	INTERGENIC
3R	13600157	3R_13600157_SNP [dm3] 3R_17774435_SNP [dm6]	T	G	7.155e^-5	0.801	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
2R	20946369	2R_20946369_SNP [dm3] 2R_25058846_SNP [dm6]	C	T	7.165e^-5	0.801	INTERGENIC	regulatory region FlyBase REDfly_CRMs
2L	4147037	2L_4147037_SNP [dm3] 2L_4147037_SNP [dm6]	A	T	7.277e^-5	0.801	INTERGENIC
2R	11724908	2R_11724908_SNP [dm3] 2R_15837403_SNP [dm6]	C	T	7.302e^-5	0.801	INTRON tun	regulatory region REDfly_CRMs
2R	8479010	2R_8479010_SNP [dm3] 2R_12591505_SNP [dm6]	T	C	7.349e^-5	0.801	DOWNSTREAM CR30055 INTRON Sin3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2L	5496684	2L_5496684_SNP [dm3] 2L_5496684_SNP [dm6]	A	G	7.418e^-5	0.801	INTERGENIC
3R	15292459	3R_15292459_SNP [dm3] 3R_19466737_SNP [dm6]	A	C	7.510e^-5	0.801	INTRON Dys
2R	13556691	2R_13556691_SNP [dm3] 2R_17669186_SNP [dm6]	G	T	7.531e^-5	0.801	UTR_3_PRIME eIF3-S8 UPSTREAM CG30108 & 1 other DOWNSTREAM eIF3-S8	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cnc
3L	11276693	3L_11276693_SNP [dm3] 3L_11283593_SNP [dm6]	A	G	7.588e^-5	0.801	INTERGENIC
2L	4930748	2L_4930748_SNP [dm3] 2L_4930748_SNP [dm6]	T	A	7.594e^-5	0.801	INTRON hoe1
2L	22297776	2L_22297776_SNP [dm3] 2L_22297776_SNP [dm6]	G	A	7.628e^-5	0.801	INTERGENIC	transposable element FlyBase
3L	10951763	3L_10951763_SNP [dm3] 3L_10958663_SNP [dm6]	G	C	7.669e^-5	0.801	UPSTREAM CR45248 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	17460045	3L_17460045_SNP [dm3] 3L_17466945_SNP [dm6]	C	T	7.705e^-5	0.801	DOWNSTREAM CG7603 INTERGENIC
2R	11907181	2R_11907181_SNP [dm3] 2R_16019676_SNP [dm6]	A	G	7.710e^-5	0.801	INTRON CG8399
2R	15596175	2R_15596175_DEL [dm3] 2R_19708670_DEL [dm6]	TTAAA	T	7.803e^-5	0.801	INTERGENIC
2R	15596182	2R_15596182_DEL [dm3] 2R_19708677_DEL [dm6]	TA	T	7.803e^-5	0.801	INTERGENIC
2R	10998487	2R_10998487_SNP [dm3] 2R_15110982_SNP [dm6]	T	C	7.841e^-5	0.801	INTERGENIC
3L	2645611	3L_2645611_SNP [dm3] 3L_2645611_SNP [dm6]	C	A	7.875e^-5	0.801	INTRON CG1143	TF binding site mE1_TFBS_cad
2L	2922161	2L_2922161_SNP [dm3] 2L_2922161_SNP [dm6]	T	A	7.893e^-5	0.801	INTRON lilli
3L	1103352	3L_1103352_INS [dm3] 3L_1103352_INS [dm6]	T	TGTAT	7.923e^-5	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	14816333	3L_14816333_SNP [dm3] 3L_14823233_SNP [dm6]	G	A	7.927e^-5	0.801	INTRON CG17839
2R	15903310	2R_15903310_DEL [dm3] 2R_20015805_DEL [dm6]	TGA	T	8.045e^-5	0.801	DOWNSTREAM CR44630 INTERGENIC
2R	8479079	2R_8479079_SNP [dm3] 2R_12591574_SNP [dm6]	G	T	8.100e^-5	0.801	DOWNSTREAM CR30055 INTRON Sin3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2R	19127148	2R_19127148_SNP [dm3] 2R_23239625_SNP [dm6]	T	G	8.137e^-5	0.801	INTERGENIC
2R	7961322	2R_7961322_SNP [dm3] 2R_12073817_SNP [dm6]	C	T	8.159e^-5	0.801	INTRON CG8888
X	18264596	X_18264596_SNP [dm3] X_18370563_SNP [dm6]	A	G	8.190e^-5	0.801	UPSTREAM CrebB & 1 other INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Trl
2L	12923423	2L_12923423_SNP [dm3] 2L_12923423_SNP [dm6]	T	G	8.215e^-5	0.801	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
X	17259658	X_17259658_SNP [dm3] X_17365625_SNP [dm6]	T	C	8.234e^-5	0.801	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
X	22332606	X_22332606_SNP [dm3] X_22930770_SNP [dm6]	C	G	8.248e^-5	0.801	INTERGENIC
2R	10544277	2R_10544277_SNP [dm3] 2R_14656772_SNP [dm6]	C	T	8.268e^-5	0.801	DOWNSTREAM Adgf-E INTERGENIC
X	21171393	X_21171393_SNP [dm3] X_21300366_SNP [dm6]	G	C	8.282e^-5	0.801	UTR_5_PRIME CG1718
2R	3178769	2R_3178769_SNP [dm3] 2R_7291264_SNP [dm6]	G	A	8.319e^-5	0.801	INTRON pwn	TF binding site mE1_TFBS_cad
2R	18542624	2R_18542624_SNP [dm3] 2R_22655119_SNP [dm6]	A	T	8.338e^-5	0.801	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other INTRON CG30196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16619032	2L_16619032_SNP [dm3] 2L_16619032_SNP [dm6]	A	C	8.395e^-5	0.801	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4930475	2L_4930475_SNP [dm3] 2L_4930475_SNP [dm6]	A	G	8.430e^-5	0.801	INTRON hoe1
X	7623661	X_7623661_SNP [dm3] X_7729628_SNP [dm6]	G	T	8.450e^-5	0.801	INTRON CG12155	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	3079481	2R_3079481_SNP [dm3] 2R_7191976_SNP [dm6]	T	G	8.467e^-5	0.801	INTRON pk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	742992	3L_742992_DEL [dm3] 3L_742992_DEL [dm6]	ATGGTTTTTGATAACTAA...	A	8.478e^-5	0.801	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	22615421	3R_22615421_SNP [dm3] 3R_26789699_SNP [dm6]	T	A	8.493e^-5	0.801	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	18265153	X_18265153_SNP [dm3] X_18371120_SNP [dm6]	G	T	8.565e^-5	0.801	UTR_5_PRIME CrebB UPSTREAM CrebB INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	5145560	3L_5145560_SNP [dm3] 3L_5152460_SNP [dm6]	T	A	8.616e^-5	0.801	UPSTREAM Srp54k & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8479078	2R_8479078_SNP [dm3] 2R_12591573_SNP [dm6]	G	T	8.673e^-5	0.801	DOWNSTREAM CR30055 INTRON Sin3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
3L	17624822	3L_17624822_SNP [dm3] 3L_17631722_SNP [dm6]	G	C	8.704e^-5	0.801	DOWNSTREAM CG7510 EXON CR44566
2R	16998506	2R_16998506_SNP [dm3] 2R_21111001_SNP [dm6]	A	G	8.737e^-5	0.801	INTRON ktub
2R	16998554	2R_16998554_SNP [dm3] 2R_21111049_SNP [dm6]	A	T	8.742e^-5	0.801	INTRON ktub
3L	1570824	3L_1570824_SNP [dm3] 3L_1570824_SNP [dm6]	T	C	8.786e^-5	0.801	INTRON CG12004	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	376777	2L_376777_SNP [dm3] 2L_376777_SNP [dm6]	G	A	8.902e^-5	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	10410917	3R_10410917_SNP [dm3] 3R_14585195_SNP [dm6]	A	T	8.967e^-5	0.801	INTRON stumps	TF binding site BDTNP1_TFBS_prd
X	14154318	X_14154318_SNP [dm3] X_14260285_SNP [dm6]	T	G	9.029e^-5	0.801	UPSTREAM CG1461 INTERGENIC
3L	391184	3L_391184_SNP [dm3] 3L_391184_SNP [dm6]	C	A	9.039e^-5	0.801	DOWNSTREAM CR45378 INTRON trh
3L	743058	3L_743058_SNP [dm3] 3L_743058_SNP [dm6]	T	A	9.073e^-5	0.801	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	13990762	3L_13990762_SNP [dm3] 3L_13997662_SNP [dm6]	G	A	9.077e^-5	0.801	NON_SYNONYMOUS_CODING CG17361 DOWNSTREAM CG17359	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18542312	2R_18542312_SNP [dm3] 2R_22654807_SNP [dm6]	C	G	9.130e^-5	0.801	UTR_3_PRIME CG30196 UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other	TF binding site mE1_TFBS_cad
2L	1675714	2L_1675714_SNP [dm3] 2L_1675714_SNP [dm6]	T	A	9.133e^-5	0.801	INTRON chinmo
2L	1675720	2L_1675720_SNP [dm3] 2L_1675720_SNP [dm6]	C	G	9.133e^-5	0.801	INTRON chinmo
3R	26618196	3R_26618196_SNP [dm3] 3R_30792474_SNP [dm6]	C	T	9.142e^-5	0.801	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
2R	19317545	2R_19317545_SNP [dm3] 2R_23430022_SNP [dm6]	G	T	9.163e^-5	0.801	INTRON CG9815
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	9.234e^-5	0.801	EXON CR44950
3L	4817350	3L_4817350_SNP [dm3] 3L_4817350_SNP [dm6]	G	A	9.246e^-5	0.801	SYNONYMOUS_CODING Dhc64C
3L	9557212	3L_9557212_SNP [dm3] 3L_9564112_SNP [dm6]	A	T	9.276e^-5	0.801	INTRON CG42673
3L	14835275	3L_14835275_INS [dm3] 3L_14842175_INS [dm6]	T	TTGCAA	9.384e^-5	0.801	INTRON CG17839
3L	18663271	3L_18663271_SNP [dm3] 3L_18670171_SNP [dm6]	T	C	9.404e^-5	0.801	SYNONYMOUS_CODING Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	16890386	3R_16890386_SNP [dm3] 3R_21064664_SNP [dm6]	A	G	9.404e^-5	0.801	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2L	8807137	2L_8807137_SNP [dm3] 2L_8807137_SNP [dm6]	T	C	9.470e^-5	0.803	INTERGENIC
2R	19008611	2R_19008611_SNP [dm3] 2R_23121088_SNP [dm6]	G	A	9.622e^-5	0.803	INTERGENIC
3L	17323053	3L_17323053_SNP [dm3] 3L_17329953_SNP [dm6]	A	T	9.636e^-5	0.803	UPSTREAM Or74a INTERGENIC
2L	6389905	2L_6389905_SNP [dm3] 2L_6389905_SNP [dm6]	C	T	9.666e^-5	0.803	INTRON CG42368	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17028512	2R_17028512_SNP [dm3] 2R_21141007_SNP [dm6]	A	C	9.756e^-5	0.803	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	6105638	3R_6105638_DEL [dm3] 3R_10279916_DEL [dm6]	ATGACTCCA	A	9.793e^-5	0.803	INTRON CG43143
3L	2646310	3L_2646310_SNP [dm3] 3L_2646310_SNP [dm6]	T	C	9.858e^-5	0.803	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15903314	2R_15903314_SNP [dm3] 2R_20015809_SNP [dm6]	A	C	9.874e^-5	0.803	DOWNSTREAM CR44630 INTERGENIC
X	11409403	X_11409403_SNP [dm3] X_11515370_SNP [dm6]	A	T	9.879e^-5	0.803	INTRON Drak	TF binding site mE1_TFBS_Kr
3R	6253307	3R_6253307_SNP [dm3] 3R_10427585_SNP [dm6]	G	T	9.913e^-5	0.803	INTERGENIC
2R	14452462	2R_14452462_SNP [dm3] 2R_18564957_SNP [dm6]	A	C	1.001e^-4	0.803	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	5129759	3R_5129759_SNP [dm3] 3R_9304037_SNP [dm6]	C	A	1.004e^-4	0.803	INTRON CG8861
X	12798502	X_12798502_SNP [dm3] X_12904469_SNP [dm6]	C	T	1.007e^-4	0.803	SYNONYMOUS_CODING CG4404 UPSTREAM CG4407	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3072957	2R_3072957_SNP [dm3] 2R_7185452_SNP [dm6]	C	T	1.010e^-4	0.803	DOWNSTREAM CG30384 INTRON pk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	6451166	X_6451166_SNP [dm3] X_6557133_SNP [dm6]	C	T	1.013e^-4	0.803	SYNONYMOUS_CODING CG34417 INTRON CG34417
X	10030942	X_10030942_SNP [dm3] X_10136909_SNP [dm6]	C	T	1.014e^-4	0.803	INTRON CR44894 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7408586	2R_7408586_SNP [dm3] 2R_11521081_SNP [dm6]	C	T	1.025e^-4	0.803	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	412023	3L_412023_SNP [dm3] 3L_412023_SNP [dm6]	G	T	1.031e^-4	0.803	INTERGENIC
2R	17725920	2R_17725920_SNP [dm3] 2R_21838415_SNP [dm6]	C	T	1.041e^-4	0.803	SYNONYMOUS_CODING CG4372
2L	9443469	2L_9443469_SNP [dm3] 2L_9443469_SNP [dm6]	C	T	1.042e^-4	0.803	INTRON numb
X	19871581	X_19871581_SNP [dm3] X_19977548_SNP [dm6]	T	G	1.047e^-4	0.803	INTERGENIC
3R	13948880	3R_13948880_SNP [dm3] 3R_18123158_SNP [dm6]	T	C	1.054e^-4	0.803	INTRON sr	TF binding site mE1_TFBS_inv
3L	4556656	3L_4556656_SNP [dm3] 3L_4556656_SNP [dm6]	C	G	1.055e^-4	0.803	UPSTREAM CG42540 INTRON CG42540
2R	9147422	2R_9147422_SNP [dm3] 2R_13259917_SNP [dm6]	A	T	1.056e^-4	0.803	UPSTREAM CG42319 INTERGENIC
2L	1867630	2L_1867630_SNP [dm3] 2L_1867630_SNP [dm6]	T	A	1.064e^-4	0.803	INTRON CG31663
X	6451181	X_6451181_SNP [dm3] X_6557148_SNP [dm6]	A	G	1.067e^-4	0.803	SYNONYMOUS_CODING CG34417 INTRON CG34417
2R	11340150	2R_11340150_SNP [dm3] 2R_15452645_SNP [dm6]	A	T	1.071e^-4	0.803	INTRON CG43729
2R	18542217	2R_18542217_SNP [dm3] 2R_22654712_SNP [dm6]	T	G	1.075e^-4	0.803	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG30196 & 2 others INTERGENIC	TF binding site mE1_TFBS_cad
2L	9463941	2L_9463941_SNP [dm3] 2L_9463941_SNP [dm6]	T	C	1.077e^-4	0.803	UTR_3_PRIME numb DOWNSTREAM numb
3R	6105689	3R_6105689_SNP [dm3] 3R_10279967_SNP [dm6]	G	A	1.082e^-4	0.803	INTRON CG43143
2R	13786939	2R_13786939_SNP [dm3] 2R_17899434_SNP [dm6]	A	T	1.083e^-4	0.803	INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3680456	3L_3680456_SNP [dm3] 3L_3680456_SNP [dm6]	G	T	1.086e^-4	0.803	INTERGENIC	TF binding site mE1_TFBS_cad
X	6451169	X_6451169_SNP [dm3] X_6557136_SNP [dm6]	A	T	1.087e^-4	0.803	SYNONYMOUS_CODING CG34417 INTRON CG34417
X	19115295	X_19115295_SNP [dm3] X_19221262_SNP [dm6]	C	A	1.088e^-4	0.803	INTRON CG7884	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
X	8402577	X_8402577_SNP [dm3] X_8508544_SNP [dm6]	G	A	1.096e^-4	0.806	INTRON CG33181
3L	11276913	3L_11276913_SNP [dm3] 3L_11283813_SNP [dm6]	C	G	1.106e^-4	0.81	UPSTREAM CR45404 INTERGENIC
3R	14344614	3R_14344614_SNP [dm3] 3R_18518892_SNP [dm6]	T	A	1.110e^-4	0.81	INTRON fru
2R	9147038	2R_9147038_SNP [dm3] 2R_13259533_SNP [dm6]	G	A	1.119e^-4	0.812	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3R	6105675	3R_6105675_SNP [dm3] 3R_10279953_SNP [dm6]	T	A	1.140e^-4	0.812	INTRON CG43143
3L	1167757	3L_1167757_SNP [dm3] 3L_1167757_SNP [dm6]	C	T	1.141e^-4	0.812	INTRON bab2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8908321	3L_8908321_SNP [dm3] 3L_8915221_SNP [dm6]	C	T	1.149e^-4	0.812	UPSTREAM CR43970 INTRON Tsp66E
2R	13769160	2R_13769160_SNP [dm3] 2R_17881655_SNP [dm6]	G	T	1.158e^-4	0.812	NON_SYNONYMOUS_CODING CG30110 INTRON Elk
2R	16864005	2R_16864005_SNP [dm3] 2R_20976500_SNP [dm6]	A	T	1.159e^-4	0.812	UPSTREAM CG9344 INTRON CG34115	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	11276624	3L_11276624_SNP [dm3] 3L_11283524_SNP [dm6]	G	A	1.171e^-4	0.812	INTERGENIC
3L	712348	3L_712348_SNP [dm3] 3L_712348_SNP [dm6]	G	T	1.192e^-4	0.812	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	11251034	2R_11251034_INS [dm3] 2R_15363529_INS [dm6]	A	ATA	1.194e^-4	0.812	INTRON unc-5
2L	4421150	2L_4421150_SNP [dm3] 2L_4421150_SNP [dm6]	G	T	1.195e^-4	0.812	INTRON CG15431
2R	18542589	2R_18542589_SNP [dm3] 2R_22655084_SNP [dm6]	A	G	1.199e^-4	0.812	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other INTRON CG30196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	10868903	X_10868903_SNP [dm3] X_10974870_SNP [dm6]	A	G	1.201e^-4	0.812	INTRON CG42339
X	9007178	X_9007178_SNP [dm3] X_9113145_SNP [dm6]	T	A	1.201e^-4	0.812	INTRON AP-1gamma
3L	4556796	3L_4556796_INS [dm3] 3L_4556796_INS [dm6]	T	TA	1.210e^-4	0.812	UPSTREAM CG42540 INTRON CG42540
2L	2045972	2L_2045972_SNP [dm3] 2L_2045972_SNP [dm6]	G	A	1.214e^-4	0.812	NON_SYNONYMOUS_CODING Kebab UPSTREAM CR45298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	9621573	X_9621573_SNP [dm3] X_9727540_SNP [dm6]	A	C	1.217e^-4	0.812	DOWNSTREAM CR43498 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12678631	2R_12678631_SNP [dm3] 2R_16791126_SNP [dm6]	G	A	1.219e^-4	0.812	SYNONYMOUS_CODING CG5522	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	4953988	2R_4953988_SNP [dm3] 2R_9066483_SNP [dm6]	T	C	1.224e^-4	0.812	INTRON ana	regulatory region REDfly_CRMs
X	18262665	X_18262665_SNP [dm3] X_18368632_SNP [dm6]	T	G	1.243e^-4	0.812	INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	6100265	3L_6100265_SNP [dm3] 3L_6107165_SNP [dm6]	C	T	1.244e^-4	0.812	INTRON Ets65A	TF binding site mE1_TFBS_cad
3L	4556778	3L_4556778_SNP [dm3] 3L_4556778_SNP [dm6]	A	C	1.246e^-4	0.812	UPSTREAM CG42540 INTRON CG42540
3R	18780271	3R_18780271_SNP [dm3] 3R_22954549_SNP [dm6]	G	A	1.251e^-4	0.812	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	24444894	3R_24444894_SNP [dm3] 3R_28619172_SNP [dm6]	A	G	1.252e^-4	0.812	INTRON CG10011
2R	6798005	2R_6798005_SNP [dm3] 2R_10910500_SNP [dm6]	C	T	1.255e^-4	0.812	DOWNSTREAM Obp47a INTERGENIC
2L	16957224	2L_16957224_SNP [dm3] 2L_16957224_SNP [dm6]	A	G	1.256e^-4	0.812	INTERGENIC
3L	16896011	3L_16896011_SNP [dm3] 3L_16902911_SNP [dm6]	A	T	1.257e^-4	0.812	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo
3L	6100256	3L_6100256_SNP [dm3] 3L_6107156_SNP [dm6]	A	C	1.259e^-4	0.812	INTRON Ets65A	TF binding site mE1_TFBS_cad
2R	14271036	2R_14271036_SNP [dm3] 2R_18383531_SNP [dm6]	A	T	1.259e^-4	0.812	UPSTREAM IM1 & 1 other INTERGENIC
3L	7611943	3L_7611943_SNP [dm3] 3L_7618843_SNP [dm6]	G	A	1.268e^-4	0.812	INTRON CG33275
3R	26618541	3R_26618541_SNP [dm3] 3R_30792819_SNP [dm6]	A	G	1.279e^-4	0.812	SYNONYMOUS_CODING wts	TF binding site mE1_TFBS_chinmo
2L	9443434	2L_9443434_SNP [dm3] 2L_9443434_SNP [dm6]	C	T	1.282e^-4	0.812	INTRON numb
X	4091094	X_4091094_DEL [dm3] X_4197061_DEL [dm6]	AAA	A	1.294e^-4	0.812	INTRON Fas2
3L	5152409	3L_5152409_DEL [dm3] 3L_5159309_DEL [dm6]	GTG	G	1.295e^-4	0.812	UTR_3_PRIME shep
3R	21344585	3R_21344585_SNP [dm3] 3R_25518863_SNP [dm6]	G	T	1.298e^-4	0.812	INTRON msi	TF binding site mE1_TFBS_Trl
X	9721384	X_9721384_DEL [dm3] X_9827351_DEL [dm6]	AA	A	1.303e^-4	0.812	INTRON CG32698
2R	10847556	2R_10847556_SNP [dm3] 2R_14960051_SNP [dm6]	T	G	1.303e^-4	0.812	INTRON aPKC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9881211	3R_9881211_SNP [dm3] 3R_14055489_SNP [dm6]	A	C	1.305e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20685197	2L_20685197_SNP [dm3] 2L_20685197_SNP [dm6]	T	C	1.307e^-4	0.812	UTR_3_PRIME Hr38
2L	1210136	2L_1210136_SNP [dm3] 2L_1210136_SNP [dm6]	T	A	1.308e^-4	0.812	INTERGENIC
2R	15838900	2R_15838900_SNP [dm3] 2R_19951395_SNP [dm6]	C	T	1.313e^-4	0.812	UTR_5_PRIME CG10822
3L	11168307	3L_11168307_SNP [dm3] 3L_11175207_SNP [dm6]	T	A	1.322e^-4	0.812	INTRON CG14142
2R	11409444	2R_11409444_SNP [dm3] 2R_15521939_SNP [dm6]	A	G	1.323e^-4	0.812	SPLICE_SITE_REGION Khc-73 SYNONYMOUS_CODING Khc-73
3R	15292424	3R_15292424_SNP [dm3] 3R_19466702_SNP [dm6]	T	G	1.325e^-4	0.812	INTRON Dys
2R	4944897	2R_4944897_SNP [dm3] 2R_9057392_SNP [dm6]	C	A	1.328e^-4	0.812	INTRON CG13743
X	3377694	X_3377694_SNP [dm3] X_3483661_SNP [dm6]	G	A	1.328e^-4	0.812	SYNONYMOUS_CODING CG10802 DOWNSTREAM CG14270 INTRON CR44999	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	3437649	2L_3437649_SNP [dm3] 2L_3437649_SNP [dm6]	A	T	1.334e^-4	0.812	INTERGENIC
3L	11270074	3L_11270074_SNP [dm3] 3L_11276974_SNP [dm6]	A	G	1.336e^-4	0.812	INTERGENIC
2R	17122056	2R_17122056_SNP [dm3] 2R_21234551_SNP [dm6]	C	T	1.340e^-4	0.812	INTRON ASPP
X	19871890	X_19871890_SNP [dm3] X_19977857_SNP [dm6]	C	T	1.347e^-4	0.812	INTERGENIC
3L	2645491	3L_2645491_SNP [dm3] 3L_2645491_SNP [dm6]	A	T	1.358e^-4	0.812	INTRON CG1143
3L	9873427	3L_9873427_SNP [dm3] 3L_9880327_SNP [dm6]	A	G	1.365e^-4	0.812	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
X	3290362	X_3290362_SNP [dm3] X_3396329_SNP [dm6]	T	A	1.365e^-4	0.812	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14561384	3L_14561384_SNP [dm3] 3L_14568284_SNP [dm6]	G	A	1.372e^-4	0.812	DOWNSTREAM CG42758 INTERGENIC
3L	712385	3L_712385_DEL [dm3] 3L_712385_DEL [dm6]	TA	T	1.380e^-4	0.812	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	17347034	3R_17347034_SNP [dm3] 3R_21521312_SNP [dm6]	G	T	1.384e^-4	0.812	INTRON CG7956	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	9147009	2R_9147009_SNP [dm3] 2R_13259504_SNP [dm6]	T	G	1.386e^-4	0.812	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3R	4415773	3R_4415773_SNP [dm3] 3R_8590051_SNP [dm6]	G	T	1.389e^-4	0.812	INTRON 5-HT2B	TF binding site mE1_TFBS_cad
3R	15072398	3R_15072398_SNP [dm3] 3R_19246676_SNP [dm6]	G	A	1.393e^-4	0.812	UPSTREAM unc79 DOWNSTREAM CG5217 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14344624	3R_14344624_SNP [dm3] 3R_18518902_SNP [dm6]	C	G	1.398e^-4	0.812	INTRON fru
2L	9430498	2L_9430498_SNP [dm3] 2L_9430498_SNP [dm6]	T	A	1.401e^-4	0.812	UPSTREAM FucTB & 1 other INTRON FucTB
X	19871664	X_19871664_SNP [dm3] X_19977631_SNP [dm6]	C	G	1.407e^-4	0.812	INTERGENIC
3R	4415784	3R_4415784_SNP [dm3] 3R_8590062_SNP [dm6]	C	T	1.412e^-4	0.812	INTRON 5-HT2B	TF binding site mE1_TFBS_cad
3R	4415796	3R_4415796_SNP [dm3] 3R_8590074_SNP [dm6]	C	A	1.412e^-4	0.812	INTRON 5-HT2B	TF binding site mE1_TFBS_cad
X	19019176	X_19019176_SNP [dm3] X_19125143_SNP [dm6]	C	A	1.421e^-4	0.812	UTR_3_PRIME tgy UPSTREAM CG15882 DOWNSTREAM tgy
3L	21424490	3L_21424490_SNP [dm3] 3L_21431390_SNP [dm6]	A	C	1.438e^-4	0.812	SYNONYMOUS_CODING CG33288 INTRON barc	TF binding site mE1_TFBS_sens
3R	10435085	3R_10435085_SNP [dm3] 3R_14609363_SNP [dm6]	G	T	1.445e^-4	0.812	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11276895	3L_11276895_SNP [dm3] 3L_11283795_SNP [dm6]	A	T	1.454e^-4	0.812	UPSTREAM CR45404 INTERGENIC
2R	14271043	2R_14271043_DEL [dm3] 2R_18383538_DEL [dm6]	TAATGTCTTC	T	1.461e^-4	0.812	UPSTREAM IM1 & 1 other INTERGENIC
3L	1570866	3L_1570866_SNP [dm3] 3L_1570866_SNP [dm6]	T	C	1.466e^-4	0.812	INTRON CG12004	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	10279902	3L_10279902_SNP [dm3] 3L_10286802_SNP [dm6]	A	G	1.471e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	1.484e^-4	0.812	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10846476	2R_10846476_SNP [dm3] 2R_14958971_SNP [dm6]	T	C	1.485e^-4	0.812	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	11339584	2R_11339584_SNP [dm3] 2R_15452079_SNP [dm6]	G	C	1.485e^-4	0.812	INTRON CG43729
3L	1103303	3L_1103303_INS [dm3] 3L_1103303_INS [dm6]	A	AACCGAT	1.486e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	2660003	2L_2660003_SNP [dm3] 2L_2660003_SNP [dm6]	T	A	1.488e^-4	0.812	INTERGENIC
2R	14932148	2R_14932148_DEL [dm3] 2R_19044643_DEL [dm6]	AA	A	1.495e^-4	0.812	INTERGENIC
X	15264242	X_15264242_SNP [dm3] X_15370209_SNP [dm6]	T	C	1.495e^-4	0.812	INTRON acj6
2L	4318113	2L_4318113_SNP [dm3] 2L_4318113_SNP [dm6]	T	C	1.510e^-4	0.812	INTRON tutl	TF binding site mE1_TFBS_HSA
3L	11789578	3L_11789578_SNP [dm3] 3L_11796478_SNP [dm6]	G	A	1.516e^-4	0.812	SYNONYMOUS_CODING Klp68D	TF binding site mE1_TFBS_sens
3L	20635410	3L_20635410_SNP [dm3] 3L_20642310_SNP [dm6]	T	A	1.518e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
2L	12325115	2L_12325115_SNP [dm3] 2L_12325115_SNP [dm6]	T	C	1.526e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9147010	2R_9147010_SNP [dm3] 2R_13259505_SNP [dm6]	T	G	1.532e^-4	0.812	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
X	20262267	X_20262267_SNP [dm3] X_20391240_SNP [dm6]	A	G	1.538e^-4	0.812	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13556727	2R_13556727_SNP [dm3] 2R_17669222_SNP [dm6]	A	T	1.538e^-4	0.812	UTR_3_PRIME eIF3-S8 UPSTREAM CG30108 & 1 other DOWNSTREAM eIF3-S8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
3L	712376	3L_712376_SNP [dm3] 3L_712376_SNP [dm6]	G	A	1.541e^-4	0.812	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	7025296	2L_7025296_SNP [dm3] 2L_7025296_SNP [dm6]	C	A	1.542e^-4	0.812	NON_SYNONYMOUS_CODING CG31908	TF binding site mE1_TFBS_cad
X	2690048	X_2690048_SNP [dm3] X_2796015_SNP [dm6]	A	C	1.543e^-4	0.812	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	6606992	2R_6606992_SNP [dm3] 2R_10719487_SNP [dm6]	A	T	1.549e^-4	0.812	INTRON stan
3R	26628563	3R_26628563_SNP [dm3] 3R_30802841_SNP [dm6]	G	C	1.553e^-4	0.812	INTRON wts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
3R	5121979	3R_5121979_SNP [dm3] 3R_9296257_SNP [dm6]	T	G	1.553e^-4	0.812	INTRON CG8861
3L	9661315	3L_9661315_SNP [dm3] 3L_9668215_SNP [dm6]	A	G	1.560e^-4	0.812	INTRON fry	TF binding site mE1_TFBS_cad
2R	18475324	2R_18475324_DEL [dm3] 2R_22587819_DEL [dm6]	GA	G	1.566e^-4	0.812	INTRON dnr1
3L	12568589	3L_12568589_SNP [dm3] 3L_12575489_SNP [dm6]	G	T	1.571e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	14271079	2R_14271079_MNP [dm3] 2R_18383574_MNP [dm6]	ACA	CAG	1.575e^-4	0.812	UPSTREAM IM1 & 2 others INTERGENIC
2R	4956241	2R_4956241_SNP [dm3] 2R_9068736_SNP [dm6]	T	G	1.577e^-4	0.812	UPSTREAM ana INTRON ana
3L	14815037	3L_14815037_SNP [dm3] 3L_14821937_SNP [dm6]	A	C	1.577e^-4	0.812	INTRON CG17839
2R	6804120	2R_6804120_SNP [dm3] 2R_10916615_SNP [dm6]	C	T	1.581e^-4	0.812	INTERGENIC
3R	25799122	3R_25799122_SNP [dm3] 3R_29973400_SNP [dm6]	G	C	1.581e^-4	0.812	INTERGENIC
X	21081580	X_21081580_SNP [dm3] X_21210553_SNP [dm6]	A	G	1.585e^-4	0.812	INTRON CG32521
3R	16890254	3R_16890254_SNP [dm3] 3R_21064532_SNP [dm6]	A	C	1.588e^-4	0.812	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2L	9445125	2L_9445125_SNP [dm3] 2L_9445125_SNP [dm6]	T	C	1.592e^-4	0.812	INTRON numb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15072981	3R_15072981_SNP [dm3] 3R_19247259_SNP [dm6]	T	C	1.600e^-4	0.812	UTR_3_PRIME CG5217	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	24416328	3R_24416328_SNP [dm3] 3R_28590606_SNP [dm6]	C	T	1.614e^-4	0.812	EXON MRE23	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	21183165	X_21183165_SNP [dm3] X_21312138_SNP [dm6]	T	A	1.617e^-4	0.812	SYNONYMOUS_CODING CG1801
3R	8388326	3R_8388326_SNP [dm3] 3R_12562604_SNP [dm6]	C	T	1.619e^-4	0.812	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
3R	16890805	3R_16890805_SNP [dm3] 3R_21065083_SNP [dm6]	A	C	1.624e^-4	0.812	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
2R	9806476	2R_9806476_SNP [dm3] 2R_13918971_SNP [dm6]	G	T	1.628e^-4	0.812	INTRON shot	TF binding site mE1_TFBS_Trl
3L	14057292	3L_14057292_SNP [dm3] 3L_14064192_SNP [dm6]	C	T	1.630e^-4	0.812	INTRON CG32138	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	7321694	3R_7321694_SNP [dm3] 3R_11495972_SNP [dm6]	T	C	1.631e^-4	0.812	INTERGENIC
X	10534108	X_10534108_SNP [dm3] X_10640075_SNP [dm6]	A	G	1.638e^-4	0.812	INTRON X11Lbeta
3R	16709916	3R_16709916_SNP [dm3] 3R_20884194_SNP [dm6]	A	T	1.642e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_cad
2R	13772991	2R_13772991_SNP [dm3] 2R_17885486_SNP [dm6]	C	T	1.643e^-4	0.812	INTRON Elk
3R	14395022	3R_14395022_SNP [dm3] 3R_18569300_SNP [dm6]	G	A	1.644e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3R	6105630	3R_6105630_SNP [dm3] 3R_10279908_SNP [dm6]	T	A	1.646e^-4	0.812	INTRON CG43143
3L	16983323	3L_16983323_SNP [dm3] 3L_16990223_SNP [dm6]	A	G	1.650e^-4	0.812	INTRON Exn
3L	14556127	3L_14556127_SNP [dm3] 3L_14563027_SNP [dm6]	G	T	1.652e^-4	0.812	DOWNSTREAM CG34039 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1
3L	16202346	3L_16202346_SNP [dm3] 3L_16209246_SNP [dm6]	C	T	1.662e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_cad
3L	4556696	3L_4556696_SNP [dm3] 3L_4556696_SNP [dm6]	T	A	1.663e^-4	0.812	UPSTREAM CG42540 INTRON CG42540
2L	16183859	2L_16183859_DEL [dm3] 2L_16183859_DEL [dm6]	TT	T	1.663e^-4	0.812	INTRON Ca-alpha1D
2R	12050383	2R_12050383_SNP [dm3] 2R_16162878_SNP [dm6]	C	T	1.667e^-4	0.812	INTRON lbk
2R	14086288	2R_14086288_SNP [dm3] 2R_18198783_SNP [dm6]	A	C	1.677e^-4	0.812	INTERGENIC
2R	15903063	2R_15903063_SNP [dm3] 2R_20015558_SNP [dm6]	A	C	1.681e^-4	0.812	DOWNSTREAM CR44629 & 1 other INTERGENIC
3L	10025688	3L_10025688_SNP [dm3] 3L_10032588_SNP [dm6]	A	T	1.686e^-4	0.812	INTRON dpr6
X	6759897	X_6759897_SNP [dm3] X_6865864_SNP [dm6]	A	T	1.687e^-4	0.812	INTRON CG43736 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	4091100	X_4091100_SNP [dm3] X_4197067_SNP [dm6]	G	C	1.692e^-4	0.812	INTRON Fas2
3L	14811233	3L_14811233_SNP [dm3] 3L_14818133_SNP [dm6]	C	T	1.697e^-4	0.812	INTRON CG17839
2R	15906467	2R_15906467_SNP [dm3] 2R_20018962_SNP [dm6]	T	C	1.702e^-4	0.812	INTERGENIC
3R	7321697	3R_7321697_SNP [dm3] 3R_11495975_SNP [dm6]	C	T	1.710e^-4	0.812	INTERGENIC
2L	15281222	2L_15281222_SNP [dm3] 2L_15281222_SNP [dm6]	A	G	1.712e^-4	0.812	DOWNSTREAM CR45349 INTERGENIC
2L	378373	2L_378373_SNP [dm3] 2L_378373_SNP [dm6]	A	T	1.715e^-4	0.812	UTR_5_PRIME al	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	15401423	3L_15401423_SNP [dm3] 3L_15408323_SNP [dm6]	A	T	1.719e^-4	0.812	DOWNSTREAM CG33259 INTERGENIC
2L	7922249	2L_7922249_SNP [dm3] 2L_7922249_SNP [dm6]	G	A	1.720e^-4	0.812	INTRON Snoo
2R	15838903	2R_15838903_SNP [dm3] 2R_19951398_SNP [dm6]	A	C	1.724e^-4	0.812	UTR_5_PRIME CG10822
2R	18542565	2R_18542565_SNP [dm3] 2R_22655060_SNP [dm6]	G	A	1.734e^-4	0.812	SYNONYMOUS_CODING CG30196 UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15325922	3R_15325922_INS [dm3] 3R_19500200_INS [dm6]	A	AGATTCTTCTTAAA...	1.736e^-4	0.812	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	21849370	2L_21849370_SNP [dm3] 2L_21849370_SNP [dm6]	C	T	1.737e^-4	0.812	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	7624591	X_7624591_SNP [dm3] X_7730558_SNP [dm6]	G	A	1.740e^-4	0.812	NON_SYNONYMOUS_CODING CG12155	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	14842540	X_14842540_SNP [dm3] X_14948507_SNP [dm6]	T	C	1.741e^-4	0.812	INTRON pdgy	TF binding site mE1_TFBS_HSA
3R	17347161	3R_17347161_SNP [dm3] 3R_21521439_SNP [dm6]	C	T	1.744e^-4	0.812	INTRON CG7956	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	4934322	3R_4934322_SNP [dm3] 3R_9108600_SNP [dm6]	C	T	1.744e^-4	0.812	INTRON pum
3R	18739168	3R_18739168_SNP [dm3] 3R_22913446_SNP [dm6]	A	T	1.746e^-4	0.812	INTRON klg
X	4094020	X_4094020_SNP [dm3] X_4199987_SNP [dm6]	T	C	1.748e^-4	0.812	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19719423	2R_19719423_SNP [dm3] 2R_23831900_SNP [dm6]	A	G	1.762e^-4	0.812	INTRON CG5549
2R	19719350	2R_19719350_SNP [dm3] 2R_23831827_SNP [dm6]	T	G	1.772e^-4	0.812	INTRON CG5549
3L	5892565	3L_5892565_SNP [dm3] 3L_5899465_SNP [dm6]	C	T	1.779e^-4	0.812	UPSTREAM CG32409 DOWNSTREAM CG5592 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	11530467	2R_11530467_SNP [dm3] 2R_15642962_SNP [dm6]	T	A	1.780e^-4	0.812	INTRON CG42524
2R	10998554	2R_10998554_INS [dm3] 2R_15111049_INS [dm6]	A	ACCATAAGAACCACTAATGG...	1.784e^-4	0.812	INTERGENIC
3L	9491503	3L_9491503_SNP [dm3] 3L_9498403_SNP [dm6]	T	C	1.790e^-4	0.812	INTRON path
3L	14079483	3L_14079483_DEL [dm3] 3L_14086383_DEL [dm6]	AAAGGAACTCA...	A	1.791e^-4	0.812	DOWNSTREAM CG8100 INTERGENIC
3L	712384	3L_712384_SNP [dm3] 3L_712384_SNP [dm6]	T	C	1.792e^-4	0.812	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	1.806e^-4	0.812	INTRON dnc
X	18115559	X_18115559_SNP [dm3] X_18221526_SNP [dm6]	C	T	1.814e^-4	0.812	INTRON CG33639	TF binding site mE1_TFBS_chinmo
3L	10915007	3L_10915007_SNP [dm3] 3L_10921907_SNP [dm6]	G	A	1.815e^-4	0.812	INTERGENIC
2R	11872555	2R_11872555_SNP [dm3] 2R_15985050_SNP [dm6]	T	C	1.822e^-4	0.812	SYNONYMOUS_CODING Strn-Mlck
3R	14739820	3R_14739820_SNP [dm3] 3R_18914098_SNP [dm6]	T	C	1.825e^-4	0.812	UPSTREAM Xrp1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	14678270	2R_14678270_SNP [dm3] 2R_18790765_SNP [dm6]	T	C	1.827e^-4	0.812	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13310278	3L_13310278_SNP [dm3] 3L_13317178_SNP [dm6]	C	G	1.835e^-4	0.812	INTERGENIC
2R	10998575	2R_10998575_SNP [dm3] 2R_15111070_SNP [dm6]	T	G	1.838e^-4	0.812	INTERGENIC
3L	6100268	3L_6100268_SNP [dm3] 3L_6107168_SNP [dm6]	G	C	1.839e^-4	0.812	INTRON Ets65A	TF binding site mE1_TFBS_cad
3R	22618992	3R_22618992_SNP [dm3] 3R_26793270_SNP [dm6]	A	G	1.847e^-4	0.812	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15757612	3L_15757612_SNP [dm3] 3L_15764512_SNP [dm6]	G	T	1.852e^-4	0.812	INTERGENIC
3L	16897808	3L_16897808_SNP [dm3] 3L_16904708_SNP [dm6]	G	C	1.855e^-4	0.812	SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
2R	17774715	2R_17774715_SNP [dm3] 2R_21887210_SNP [dm6]	C	T	1.861e^-4	0.812	INTRON Fili
2R	9147034	2R_9147034_SNP [dm3] 2R_13259529_SNP [dm6]	G	T	1.865e^-4	0.812	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2R	10998591	2R_10998591_SNP [dm3] 2R_15111086_SNP [dm6]	G	T	1.866e^-4	0.812	INTERGENIC
2R	10998597	2R_10998597_SNP [dm3] 2R_15111092_SNP [dm6]	T	C	1.866e^-4	0.812	INTERGENIC
2R	10998602	2R_10998602_SNP [dm3] 2R_15111097_SNP [dm6]	A	T	1.866e^-4	0.812	INTERGENIC
X	15413677	X_15413677_SNP [dm3] X_15519644_SNP [dm6]	C	G	1.879e^-4	0.812	INTRON Ac13E
2R	14978893	2R_14978893_SNP [dm3] 2R_19091388_SNP [dm6]	C	T	1.882e^-4	0.812	SYNONYMOUS_CODING 5-HT1A
3L	1103308	3L_1103308_SNP [dm3] 3L_1103308_SNP [dm6]	A	T	1.888e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	6898468	X_6898468_SNP [dm3] X_7004435_SNP [dm6]	C	T	1.905e^-4	0.812	DOWNSTREAM Inx2 INTRON Inx7
3L	14556133	3L_14556133_SNP [dm3] 3L_14563033_SNP [dm6]	T	A	1.911e^-4	0.812	DOWNSTREAM CG34039 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1
3R	16003528	3R_16003528_SNP [dm3] 3R_20177806_SNP [dm6]	G	A	1.913e^-4	0.812	INTERGENIC
3R	17353856	3R_17353856_SNP [dm3] 3R_21528134_SNP [dm6]	C	T	1.914e^-4	0.812	UTR_3_PRIME CG7956 DOWNSTREAM CG7956	TF binding site BDTNP1_TFBS_slp1
3L	743993	3L_743993_SNP [dm3] 3L_743993_SNP [dm6]	T	C	1.922e^-4	0.812	UPSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18780272	3R_18780272_SNP [dm3] 3R_22954550_SNP [dm6]	A	G	1.924e^-4	0.812	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	16889996	3R_16889996_SNP [dm3] 3R_21064274_SNP [dm6]	T	C	1.926e^-4	0.812	UPSTREAM AnxB9 INTRON Cortactin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	4545922	3L_4545922_SNP [dm3] 3L_4545922_SNP [dm6]	G	A	1.927e^-4	0.812	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10998561	2R_10998561_INS [dm3] 2R_15111056_INS [dm6]	T	TCTATC	1.934e^-4	0.812	INTERGENIC
2R	4956302	2R_4956302_SNP [dm3] 2R_9068797_SNP [dm6]	C	T	1.934e^-4	0.812	UPSTREAM ana INTRON ana
3R	10875304	3R_10875304_INS [dm3] 3R_15049582_INS [dm6]	ACC	TATGTA	1.937e^-4	0.812	INTERGENIC
3L	14835301	3L_14835301_SNP [dm3] 3L_14842201_SNP [dm6]	T	A	1.937e^-4	0.812	INTRON CG17839
2R	12112716	2R_12112716_SNP [dm3] 2R_16225211_SNP [dm6]	A	G	1.940e^-4	0.812	UTR_5_PRIME CG15706
3R	9306338	3R_9306338_SNP [dm3] 3R_13480616_SNP [dm6]	T	A	1.943e^-4	0.812	INTERGENIC
2L	3523992	2L_3523992_SNP [dm3] 2L_3523992_SNP [dm6]	C	A	1.943e^-4	0.812	UTR_5_PRIME Sr-CIV
X	19421607	X_19421607_DEL [dm3] X_19527574_DEL [dm6]	CAC	C	1.944e^-4	0.812	UPSTREAM CoRest INTRON CoRest	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9147482	2R_9147482_SNP [dm3] 2R_13259977_SNP [dm6]	A	G	1.948e^-4	0.812	UPSTREAM CG42319 INTERGENIC
2R	21060294	2R_21060294_SNP [dm3] 2R_25172771_SNP [dm6]	A	T	1.948e^-4	0.812	UPSTREAM Sfp60F DOWNSTREAM PebII INTERGENIC
X	6451143	X_6451143_SNP [dm3] X_6557110_SNP [dm6]	A	C	1.949e^-4	0.812	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
3L	14556164	3L_14556164_SNP [dm3] 3L_14563064_SNP [dm6]	T	G	1.950e^-4	0.812	DOWNSTREAM CG34039 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1
X	21063578	X_21063578_SNP [dm3] X_21192551_SNP [dm6]	G	A	1.952e^-4	0.812	UPSTREAM CG14579 INTERGENIC
3R	19283761	3R_19283761_SNP [dm3] 3R_23458039_SNP [dm6]	A	T	1.958e^-4	0.812	INTRON CG4374
3R	27129490	3R_27129490_SNP [dm3] 3R_31303768_SNP [dm6]	A	G	1.969e^-4	0.812	SYNONYMOUS_CODING CG11340	TF binding site mE1_TFBS_sens
2L	15306037	2L_15306037_SNP [dm3] 2L_15306037_SNP [dm6]	T	A	1.969e^-4	0.812	INTERGENIC
2R	10998606	2R_10998606_SNP [dm3] 2R_15111101_SNP [dm6]	A	C	1.973e^-4	0.812	INTERGENIC
2R	11340700	2R_11340700_SNP [dm3] 2R_15453195_SNP [dm6]	T	G	1.985e^-4	0.812	INTRON CG43729
3R	10575129	3R_10575129_SNP [dm3] 3R_14749407_SNP [dm6]	C	G	1.987e^-4	0.812	UPSTREAM jvl & 1 other INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3L	14556145	3L_14556145_SNP [dm3] 3L_14563045_SNP [dm6]	A	G	1.993e^-4	0.812	DOWNSTREAM CG34039 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1
3L	4668341	3L_4668341_SNP [dm3] 3L_4668341_SNP [dm6]	A	G	2.017e^-4	0.812	UPSTREAM CG32236 INTRON axo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8447278	2L_8447278_SNP [dm3] 2L_8447278_SNP [dm6]	T	G	2.020e^-4	0.812	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	7617541	X_7617541_SNP [dm3] X_7723508_SNP [dm6]	C	A	2.024e^-4	0.812	SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	4513872	X_4513872_INS [dm3] X_4619839_INS [dm6]	CG	ATCTCTTATT	2.025e^-4	0.812	INTRON peb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	9147435	2R_9147435_SNP [dm3] 2R_13259930_SNP [dm6]	T	A	2.028e^-4	0.812	UPSTREAM CG42319 INTERGENIC
X	3110621	X_3110621_SNP [dm3] X_3216588_SNP [dm6]	G	C	2.029e^-4	0.812	INTRON dnc
2L	4933597	2L_4933597_SNP [dm3] 2L_4933597_SNP [dm6]	T	C	2.030e^-4	0.812	SYNONYMOUS_CODING hoe2
2R	11128197	2R_11128197_SNP [dm3] 2R_15240692_SNP [dm6]	C	T	2.032e^-4	0.812	INTRON Fs
2L	10482563	2L_10482563_SNP [dm3] 2L_10482563_SNP [dm6]	C	A	2.037e^-4	0.812	NON_SYNONYMOUS_CODING RluA-2 UTR_3_PRIME RluA-2 UPSTREAM Grip75	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	21802210	2L_21802210_SNP [dm3] 2L_21802210_SNP [dm6]	G	A	2.042e^-4	0.812	INTERGENIC
3L	11532947	3L_11532947_SNP [dm3] 3L_11539847_SNP [dm6]	A	G	2.048e^-4	0.812	INTRON Mob2
3R	15767069	3R_15767069_SNP [dm3] 3R_19941347_SNP [dm6]	G	A	2.069e^-4	0.812	INTRON Hs6st
3R	10840151	3R_10840151_SNP [dm3] 3R_15014429_SNP [dm6]	T	A	2.070e^-4	0.812	UPSTREAM CG14861 INTERGENIC
3R	19769710	3R_19769710_SNP [dm3] 3R_23943988_SNP [dm6]	G	A	2.071e^-4	0.812	SYNONYMOUS_CODING CG12268 UPSTREAM Gdh	TF binding site mE1_TFBS_cad
3L	2646631	3L_2646631_SNP [dm3] 3L_2646631_SNP [dm6]	T	A	2.073e^-4	0.812	UTR_3_PRIME CG1143 DOWNSTREAM CG1143	TF binding site mE1_TFBS_cad
2R	14086277	2R_14086277_SNP [dm3] 2R_18198772_SNP [dm6]	G	A	2.074e^-4	0.812	INTERGENIC
2L	16840396	2L_16840396_SNP [dm3] 2L_16840396_SNP [dm6]	T	C	2.076e^-4	0.812	UTR_3_PRIME SclA & 1 other INTRON SclA
X	16163210	X_16163210_SNP [dm3] X_16269177_SNP [dm6]	G	A	2.077e^-4	0.812	SYNONYMOUS_CODING kat80
3R	6105532	3R_6105532_SNP [dm3] 3R_10279810_SNP [dm6]	C	T	2.082e^-4	0.812	INTRON CG43143
X	11945085	X_11945085_SNP [dm3] X_12051052_SNP [dm6]	A	T	2.090e^-4	0.812	INTRON CR43960 & 1 other
3R	18478641	3R_18478641_SNP [dm3] 3R_22652919_SNP [dm6]	G	T	2.091e^-4	0.812	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18753175	3R_18753175_SNP [dm3] 3R_22927453_SNP [dm6]	A	C	2.091e^-4	0.812	INTRON klg
2R	4953916	2R_4953916_SNP [dm3] 2R_9066411_SNP [dm6]	G	T	2.096e^-4	0.812	INTRON ana	regulatory region REDfly_CRMs
3R	25759599	3R_25759599_SNP [dm3] 3R_29933877_SNP [dm6]	C	T	2.098e^-4	0.812	NON_SYNONYMOUS_CODING CG42557 START_GAINED CG42558 UTR_5_PRIME CG42558 UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	17327630	2L_17327630_SNP [dm3] 2L_17327630_SNP [dm6]	C	G	2.118e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9147155	2R_9147155_SNP [dm3] 2R_13259650_SNP [dm6]	A	T	2.122e^-4	0.812	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3R	26667135	3R_26667135_SNP [dm3] 3R_30841413_SNP [dm6]	A	C	2.125e^-4	0.812	UTR_3_PRIME CG15544	TF binding site mE1_TFBS_cad
X	5826894	X_5826894_INS [dm3] X_5932861_INS [dm6]	T	TT	2.134e^-4	0.812	INTRON CG3726
X	5702213	X_5702213_SNP [dm3] X_5808180_SNP [dm6]	T	G	2.137e^-4	0.812	UPSTREAM Prosbeta2R1 INTERGENIC
3L	1042784	3L_1042784_SNP [dm3] 3L_1042784_SNP [dm6]	G	A	2.138e^-4	0.812	INTRON bab1
3L	11236602	3L_11236602_SNP [dm3] 3L_11243502_SNP [dm6]	A	C	2.138e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3315081	3L_3315081_SNP [dm3] 3L_3315081_SNP [dm6]	T	C	2.141e^-4	0.812	SYNONYMOUS_CODING Drsl3 UPSTREAM Drsl4 DOWNSTREAM Drsl2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6567949	2R_6567949_SNP [dm3] 2R_10680444_SNP [dm6]	A	C	2.143e^-4	0.812	INTRON stan	TF binding site mE1_TFBS_Trl
3L	1408391	3L_1408391_SNP [dm3] 3L_1408391_SNP [dm6]	T	C	2.143e^-4	0.812	INTRON Ptp61F
2R	13745550	2R_13745550_SNP [dm3] 2R_17858045_SNP [dm6]	A	G	2.148e^-4	0.812	INTRON olf186-F
3L	19429697	3L_19429697_SNP [dm3] 3L_19436597_SNP [dm6]	C	G	2.150e^-4	0.812	INTERGENIC
2R	10998617	2R_10998617_SNP [dm3] 2R_15111112_SNP [dm6]	C	T	2.155e^-4	0.812	INTERGENIC
3R	6253185	3R_6253185_SNP [dm3] 3R_10427463_SNP [dm6]	G	C	2.157e^-4	0.812	INTERGENIC
3L	3680552	3L_3680552_SNP [dm3] 3L_3680552_SNP [dm6]	C	T	2.158e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_cad
3R	9823760	3R_9823760_SNP [dm3] 3R_13998038_SNP [dm6]	T	C	2.159e^-4	0.812	INTRON rdx	TF binding site mE1_TFBS_HSA
3L	1585958	3L_1585958_SNP [dm3] 3L_1585958_SNP [dm6]	C	T	2.161e^-4	0.812	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_kn mE1_TFBS_Trl
2R	14647134	2R_14647134_DEL [dm3] 2R_18759629_DEL [dm6]	AG	T	2.174e^-4	0.812	SPLICE_SITE_REGION Jabba INTRON Jabba
3L	9873289	3L_9873289_SNP [dm3] 3L_9880189_SNP [dm6]	C	A	2.181e^-4	0.812	INTRON CG34382	TF binding site mE1_TFBS_chinmo
2R	3078631	2R_3078631_DEL [dm3] 2R_7191126_DEL [dm6]	TACT	T	2.186e^-4	0.812	INTRON pk	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
2R	9147218	2R_9147218_SNP [dm3] 2R_13259713_SNP [dm6]	T	A	2.192e^-4	0.812	UPSTREAM CG42319 INTERGENIC
2R	18542253	2R_18542253_SNP [dm3] 2R_22654748_SNP [dm6]	A	T	2.196e^-4	0.812	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG30196 & 2 others INTERGENIC	TF binding site mE1_TFBS_cad
2R	15838836	2R_15838836_SNP [dm3] 2R_19951331_SNP [dm6]	G	C	2.197e^-4	0.812	UPSTREAM CG10822 INTERGENIC
2R	10998796	2R_10998796_SNP [dm3] 2R_15111291_SNP [dm6]	G	A	2.199e^-4	0.812	INTERGENIC
3R	17347334	3R_17347334_SNP [dm3] 3R_21521612_SNP [dm6]	C	A	2.200e^-4	0.812	INTRON CG7956	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	2689994	X_2689994_SNP [dm3] X_2795961_SNP [dm6]	G	A	2.213e^-4	0.812	INTRON kirre & 1 other	regulatory region REDfly_CRMs
X	2690011	X_2690011_SNP [dm3] X_2795978_SNP [dm6]	G	A	2.213e^-4	0.812	INTRON kirre & 1 other	regulatory region REDfly_CRMs
X	2690031	X_2690031_SNP [dm3] X_2795998_SNP [dm6]	A	G	2.213e^-4	0.812	INTRON kirre & 1 other	regulatory region REDfly_CRMs
3L	14931260	3L_14931260_SNP [dm3] 3L_14938160_SNP [dm6]	G	C	2.217e^-4	0.812	INTRON DCX-EMAP
2R	10998557	2R_10998557_SNP [dm3] 2R_15111052_SNP [dm6]	A	T	2.228e^-4	0.812	INTERGENIC
2L	4933968	2L_4933968_SNP [dm3] 2L_4933968_SNP [dm6]	G	A	2.229e^-4	0.812	INTRON hoe2
X	22332583	X_22332583_SNP [dm3] X_22930747_SNP [dm6]	C	G	2.236e^-4	0.812	INTERGENIC
2R	6791093	2R_6791093_SNP [dm3] 2R_10903588_SNP [dm6]	C	T	2.245e^-4	0.812	START_GAINED CG12943 UTR_5_PRIME CG12943
2L	4624701	2L_4624701_SNP [dm3] 2L_4624701_SNP [dm6]	C	T	2.246e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9776225	2R_9776225_SNP [dm3] 2R_13888720_SNP [dm6]	T	C	2.247e^-4	0.812	NON_SYNONYMOUS_CODING shot INTRON shot
X	5056508	X_5056508_SNP [dm3] X_5162475_SNP [dm6]	A	G	2.248e^-4	0.812	INTRON rg & 1 other
X	8133270	X_8133270_INS [dm3] X_8239237_INS [dm6]	G	GTAGATG	2.251e^-4	0.812	UTR_3_PRIME sdt
3L	2643105	3L_2643105_DEL [dm3] 3L_2643105_DEL [dm6]	TAATAT	T	2.252e^-4	0.812	INTRON CG14949
3L	19130240	3L_19130240_SNP [dm3] 3L_19137140_SNP [dm6]	T	A	2.275e^-4	0.812	INTRON CG14082
2L	15281172	2L_15281172_SNP [dm3] 2L_15281172_SNP [dm6]	G	A	2.276e^-4	0.812	DOWNSTREAM CR45349 INTERGENIC
2R	9715965	2R_9715965_SNP [dm3] 2R_13828460_SNP [dm6]	G	T	2.277e^-4	0.812	UPSTREAM CG6329 INTRON CG6329	TF binding site BDTNP1_TFBS_dl
3L	10025690	3L_10025690_DEL [dm3] 3L_10032590_DEL [dm6]	TCAAACGTGATATGAAATAT...	A	2.286e^-4	0.812	INTRON dpr6
3L	1585963	3L_1585963_SNP [dm3] 3L_1585963_SNP [dm6]	T	G	2.295e^-4	0.812	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_kn mE1_TFBS_Trl
3R	13360239	3R_13360239_INS [dm3] 3R_17534517_INS [dm6]	T	AA	2.297e^-4	0.812	UTR_5_PRIME CG5823 UPSTREAM P5cr-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	17861790	2L_17861790_DEL [dm3] 2L_17861790_DEL [dm6]	AA	A	2.298e^-4	0.812	INTRON CadN2
3L	10793233	3L_10793233_SNP [dm3] 3L_10800133_SNP [dm6]	A	C	2.298e^-4	0.812	INTERGENIC
3R	22946973	3R_22946973_SNP [dm3] 3R_27121251_SNP [dm6]	C	G	2.302e^-4	0.812	SYNONYMOUS_CODING CG5882 DOWNSTREAM CG6059	TF binding site mE1_TFBS_cad
3R	25759471	3R_25759471_SNP [dm3] 3R_29933749_SNP [dm6]	T	A	2.308e^-4	0.812	SYNONYMOUS_CODING CG42557 UTR_5_PRIME CG42558 UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	21917509	2L_21917509_SNP [dm3] 2L_21917509_SNP [dm6]	G	T	2.310e^-4	0.812	DOWNSTREAM CG11634 INTRON CG11634
2L	19765108	2L_19765108_DEL [dm3] 2L_19765108_DEL [dm6]	CG	A	2.319e^-4	0.812	UPSTREAM fbp DOWNSTREAM bsh INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	12510094	2R_12510094_SNP [dm3] 2R_16622589_SNP [dm6]	C	T	2.324e^-4	0.812	INTRON CG5065	TF binding site mE1_TFBS_cad
3L	6904128	3L_6904128_SNP [dm3] 3L_6911028_SNP [dm6]	A	G	2.326e^-4	0.812	DOWNSTREAM Prat2 INTERGENIC
3R	13600203	3R_13600203_SNP [dm3] 3R_17774481_SNP [dm6]	C	T	2.341e^-4	0.812	UTR_5_PRIME CG43102 INTRON CG43102
3R	13600449	3R_13600449_SNP [dm3] 3R_17774727_SNP [dm6]	C	T	2.341e^-4	0.812	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl
X	19873291	X_19873291_INS [dm3] X_19979258_INS [dm6]	T	TTGATGT	2.351e^-4	0.812	INTERGENIC
3R	19325039	3R_19325039_SNP [dm3] 3R_23499317_SNP [dm6]	T	C	2.351e^-4	0.812	INTERGENIC
2R	11327929	2R_11327929_SNP [dm3] 2R_15440424_SNP [dm6]	G	T	2.357e^-4	0.812	INTRON CG43729
X	21171394	X_21171394_SNP [dm3] X_21300367_SNP [dm6]	C	A	2.359e^-4	0.812	UTR_5_PRIME CG1718
2R	14270956	2R_14270956_DEL [dm3] 2R_18383451_DEL [dm6]	ATTTTT	A	2.367e^-4	0.812	UPSTREAM IM1 & 1 other INTERGENIC
2L	10229378	2L_10229378_SNP [dm3] 2L_10229378_SNP [dm6]	T	C	2.378e^-4	0.812	INTRON CG5694
2R	13932152	2R_13932152_SNP [dm3] 2R_18044647_SNP [dm6]	T	G	2.392e^-4	0.812	SYNONYMOUS_CODING CG5770 UPSTREAM CG5773
X	12266372	X_12266372_SNP [dm3] X_12372339_SNP [dm6]	A	G	2.395e^-4	0.812	UPSTREAM CG2577 INTERGENIC
3L	741724	3L_741724_INS [dm3] 3L_741724_INS [dm6]	C	CGC	2.403e^-4	0.812	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	13469273	3R_13469273_SNP [dm3] 3R_17643551_SNP [dm6]	T	C	2.404e^-4	0.812	INTRON CG43175
2R	10998641	2R_10998641_SNP [dm3] 2R_15111136_SNP [dm6]	A	C	2.407e^-4	0.812	INTERGENIC
3R	6218645	3R_6218645_SNP [dm3] 3R_10392923_SNP [dm6]	A	G	2.408e^-4	0.812	INTRON cwo
3R	12898355	3R_12898355_SNP [dm3] 3R_17072633_SNP [dm6]	A	G	2.418e^-4	0.812	UTR_5_PRIME Ns1 UPSTREAM mRpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5147044	3L_5147044_SNP [dm3] 3L_5153944_SNP [dm6]	C	T	2.425e^-4	0.812	SYNONYMOUS_CODING Srp54k	TF binding site mE1_TFBS_sens
2R	13555652	2R_13555652_SNP [dm3] 2R_17668147_SNP [dm6]	C	A	2.427e^-4	0.812	SYNONYMOUS_CODING eIF3-S8	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	5709131	3R_5709131_SNP [dm3] 3R_9883409_SNP [dm6]	C	G	2.430e^-4	0.812	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11804667	2R_11804667_SNP [dm3] 2R_15917162_SNP [dm6]	T	G	2.433e^-4	0.812	DOWNSTREAM CR44373 INTRON sli	TF binding site mE1_TFBS_cad
3R	18739202	3R_18739202_SNP [dm3] 3R_22913480_SNP [dm6]	A	T	2.442e^-4	0.812	INTRON klg
3L	16202254	3L_16202254_SNP [dm3] 3L_16209154_SNP [dm6]	C	T	2.446e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_cad
3L	2646601	3L_2646601_SNP [dm3] 3L_2646601_SNP [dm6]	T	C	2.455e^-4	0.812	UTR_3_PRIME CG1143	TF binding site mE1_TFBS_cad
3R	15325911	3R_15325911_SNP [dm3] 3R_19500189_SNP [dm6]	A	C	2.466e^-4	0.812	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10837352	2R_10837352_SNP [dm3] 2R_14949847_SNP [dm6]	A	G	2.492e^-4	0.812	UPSTREAM aPKC INTRON aPKC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	3699344	3L_3699344_SNP [dm3] 3L_3699344_SNP [dm6]	A	G	2.505e^-4	0.812	INTERGENIC
2L	17333597	2L_17333597_SNP [dm3] 2L_17333597_SNP [dm6]	A	G	2.508e^-4	0.812	INTERGENIC
3R	5138023	3R_5138023_SNP [dm3] 3R_9312301_SNP [dm6]	T	G	2.516e^-4	0.812	INTRON CG8861	TF binding site BDTNP1_TFBS_twi
2L	17333728	2L_17333728_SNP [dm3] 2L_17333728_SNP [dm6]	G	T	2.518e^-4	0.812	INTERGENIC
3L	4712167	3L_4712167_SNP [dm3] 3L_4712167_SNP [dm6]	G	A	2.518e^-4	0.812	INTRON RhoGEF64C
2R	12282058	2R_12282058_SNP [dm3] 2R_16394553_SNP [dm6]	G	A	2.520e^-4	0.812	INTRON Sema-2b
3R	5963561	3R_5963561_SNP [dm3] 3R_10137839_SNP [dm6]	T	C	2.527e^-4	0.812	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	7721690	3L_7721690_SNP [dm3] 3L_7728590_SNP [dm6]	T	G	2.532e^-4	0.812	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
2L	9199408	2L_9199408_SNP [dm3] 2L_9199408_SNP [dm6]	C	T	2.537e^-4	0.812	INTRON tai
2L	17302534	2L_17302534_SNP [dm3] 2L_17302534_SNP [dm6]	A	G	2.540e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9438520	2L_9438520_SNP [dm3] 2L_9438520_SNP [dm6]	C	T	2.549e^-4	0.812	INTRON numb	TF binding site BDTNP1_TFBS_dl
3L	14389469	3L_14389469_SNP [dm3] 3L_14396369_SNP [dm6]	C	G	2.555e^-4	0.812	INTERGENIC
X	19239433	X_19239433_SNP [dm3] X_19345400_SNP [dm6]	T	A	2.572e^-4	0.812	INTRON nAChRalpha7
3L	10025750	3L_10025750_SNP [dm3] 3L_10032650_SNP [dm6]	G	A	2.576e^-4	0.812	INTRON dpr6
2R	13558499	2R_13558499_SNP [dm3] 2R_17670994_SNP [dm6]	A	C	2.581e^-4	0.812	UPSTREAM CR44404 DOWNSTREAM CG30108 & 2 others INTERGENIC
3L	5143626	3L_5143626_SNP [dm3] 3L_5150526_SNP [dm6]	G	A	2.582e^-4	0.812	SYNONYMOUS_CODING Gen DOWNSTREAM Aats-ala-m	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7921405	3L_7921405_SNP [dm3] 3L_7928305_SNP [dm6]	C	T	2.583e^-4	0.812	SYNONYMOUS_CODING syd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2926643	X_2926643_SNP [dm3] X_3032610_SNP [dm6]	C	T	2.585e^-4	0.812	INTRON kirre
2R	19297196	2R_19297196_SNP [dm3] 2R_23409673_SNP [dm6]	C	G	2.589e^-4	0.812	INTERGENIC
3L	743013	3L_743013_SNP [dm3] 3L_743013_SNP [dm6]	G	A	2.590e^-4	0.812	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	2281996	X_2281996_SNP [dm3] X_2387963_SNP [dm6]	T	G	2.591e^-4	0.812	UPSTREAM PsGEF INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14079700	3L_14079700_SNP [dm3] 3L_14086600_SNP [dm6]	G	T	2.593e^-4	0.812	DOWNSTREAM CG8100 INTERGENIC
3L	3103931	3L_3103931_SNP [dm3] 3L_3103931_SNP [dm6]	T	C	2.595e^-4	0.812	INTRON Cht7
3L	3966428	3L_3966428_SNP [dm3] 3L_3966428_SNP [dm6]	C	A	2.597e^-4	0.812	INTERGENIC
3L	10759040	3L_10759040_SNP [dm3] 3L_10765940_SNP [dm6]	T	C	2.597e^-4	0.812	INTERGENIC
3R	27867697	3R_27867697_INS [dm3] 3R_32041975_INS [dm6]	CCA	AGTGGTGAGTGGC...	2.602e^-4	0.812	INTERGENIC
X	9816859	X_9816859_DEL [dm3] X_9922826_DEL [dm6]	CC	C	2.605e^-4	0.812	INTERGENIC
2R	7327665	2R_7327665_SNP [dm3] 2R_11440160_SNP [dm6]	C	G	2.606e^-4	0.812	INTRON CG7777
3L	3016469	3L_3016469_SNP [dm3] 3L_3016469_SNP [dm6]	G	C	2.608e^-4	0.812	NON_SYNONYMOUS_CODING CG32487 UPSTREAM CG32488
3R	14030411	3R_14030411_SNP [dm3] 3R_18204689_SNP [dm6]	G	A	2.621e^-4	0.812	INTRON CG7985
X	6952669	X_6952669_DEL [dm3] X_7058636_DEL [dm6]	TGACCTATGGGCATACA...	T	2.621e^-4	0.812	INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	1103424	3L_1103424_DEL [dm3] 3L_1103424_DEL [dm6]	CC	C	2.624e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	16876913	X_16876913_SNP [dm3] X_16982880_SNP [dm6]	T	G	2.630e^-4	0.812	INTRON CG45002
3L	11708590	3L_11708590_SNP [dm3] 3L_11715490_SNP [dm6]	G	A	2.631e^-4	0.812	UPSTREAM CG14132 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	14043664	2L_14043664_SNP [dm3] 2L_14043664_SNP [dm6]	T	C	2.641e^-4	0.812	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11266914	3L_11266914_SNP [dm3] 3L_11273814_SNP [dm6]	T	A	2.646e^-4	0.812	DOWNSTREAM CR44720 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9873577	3L_9873577_SNP [dm3] 3L_9880477_SNP [dm6]	T	C	2.646e^-4	0.812	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
3R	22141451	3R_22141451_SNP [dm3] 3R_26315729_SNP [dm6]	C	T	2.651e^-4	0.812	INTERGENIC
2L	12896052	2L_12896052_SNP [dm3] 2L_12896052_SNP [dm6]	T	C	2.660e^-4	0.812	INTERGENIC
3R	4313161	3R_4313161_SNP [dm3] 3R_8487439_SNP [dm6]	G	A	2.662e^-4	0.812	INTERGENIC
X	2926636	X_2926636_SNP [dm3] X_3032603_SNP [dm6]	T	A	2.665e^-4	0.812	INTRON kirre
3L	7938431	3L_7938431_SNP [dm3] 3L_7945331_SNP [dm6]	G	A	2.673e^-4	0.812	DOWNSTREAM CG43880 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19733007	2L_19733007_SNP [dm3] 2L_19733007_SNP [dm6]	C	A	2.678e^-4	0.812	SYNONYMOUS_CODING CG10462 DOWNSTREAM Lar
X	22332315	X_22332315_SNP [dm3] X_22930479_SNP [dm6]	C	A	2.679e^-4	0.812	INTERGENIC
3R	17345136	3R_17345136_SNP [dm3] 3R_21519414_SNP [dm6]	G	A	2.684e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	17302565	2L_17302565_SNP [dm3] 2L_17302565_SNP [dm6]	C	A	2.690e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9177943	3L_9177943_SNP [dm3] 3L_9184843_SNP [dm6]	A	C	2.692e^-4	0.812	INTERGENIC
2R	9147438	2R_9147438_SNP [dm3] 2R_13259933_SNP [dm6]	G	A	2.694e^-4	0.812	UPSTREAM CG42319 INTERGENIC
3R	14695537	3R_14695537_SNP [dm3] 3R_18869815_SNP [dm6]	C	T	2.695e^-4	0.812	INTERGENIC
3L	712399	3L_712399_SNP [dm3] 3L_712399_SNP [dm6]	A	T	2.696e^-4	0.812	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	11945098	X_11945098_SNP [dm3] X_12051065_SNP [dm6]	T	A	2.696e^-4	0.812	INTRON CR43960 & 1 other
3L	15213703	3L_15213703_SNP [dm3] 3L_15220603_SNP [dm6]	C	T	2.698e^-4	0.812	INTERGENIC
X	15077567	X_15077567_SNP [dm3] X_15183534_SNP [dm6]	A	G	2.701e^-4	0.812	INTRON CG43737
3L	20945746	3L_20945746_SNP [dm3] 3L_20952646_SNP [dm6]	G	A	2.701e^-4	0.812	INTERGENIC
X	11409478	X_11409478_SNP [dm3] X_11515445_SNP [dm6]	A	G	2.709e^-4	0.812	INTRON Drak	TF binding site mE1_TFBS_Kr
3L	1103305	3L_1103305_SNP [dm3] 3L_1103305_SNP [dm6]	T	G	2.710e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	13310271	3L_13310271_SNP [dm3] 3L_13317171_SNP [dm6]	C	T	2.714e^-4	0.812	INTERGENIC
3L	7080571	3L_7080571_SNP [dm3] 3L_7087471_SNP [dm6]	C	A	2.718e^-4	0.812	UPSTREAM Cpr65Ea DOWNSTREAM Cpr65Eb INTERGENIC	TF binding site mE1_TFBS_inv
X	8222268	X_8222268_SNP [dm3] X_8328235_SNP [dm6]	A	T	2.721e^-4	0.812	INTRON nAChRalpha3
3L	14817116	3L_14817116_SNP [dm3] 3L_14824016_SNP [dm6]	A	T	2.723e^-4	0.812	INTRON CG17839
3L	20924804	3L_20924804_SNP [dm3] 3L_20931704_SNP [dm6]	T	C	2.735e^-4	0.812	INTRON fng	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11128731	2R_11128731_SNP [dm3] 2R_15241226_SNP [dm6]	A	G	2.738e^-4	0.812	UTR_5_PRIME Fs
2R	13557062	2R_13557062_SNP [dm3] 2R_17669557_SNP [dm6]	T	G	2.748e^-4	0.812	SYNONYMOUS_CODING CG30108 UPSTREAM CG30109 DOWNSTREAM eIF3-S8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
2R	12400738	2R_12400738_SNP [dm3] 2R_16513233_SNP [dm6]	C	G	2.752e^-4	0.812	INTRON Sema-2a
2R	3255635	2R_3255635_SNP [dm3] 2R_7368130_SNP [dm6]	A	G	2.760e^-4	0.812	INTRON Dscam1
3L	1085003	3L_1085003_DEL [dm3] 3L_1085003_DEL [dm6]	AGTTTGGCCG	A	2.769e^-4	0.812	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	25806119	3R_25806119_SNP [dm3] 3R_29980397_SNP [dm6]	C	T	2.769e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	16786743	2R_16786743_SNP [dm3] 2R_20899238_SNP [dm6]	T	C	2.781e^-4	0.812	DOWNSTREAM CR43160 INTRON otp	regulatory region REDfly_CRMs
2L	4147030	2L_4147030_SNP [dm3] 2L_4147030_SNP [dm6]	C	T	2.789e^-4	0.812	INTERGENIC
3L	14817336	3L_14817336_SNP [dm3] 3L_14824236_SNP [dm6]	G	A	2.792e^-4	0.812	INTRON CG17839
2R	12116819	2R_12116819_SNP [dm3] 2R_16229314_SNP [dm6]	A	G	2.793e^-4	0.812	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12264143	X_12264143_SNP [dm3] X_12370110_SNP [dm6]	C	A	2.797e^-4	0.812	INTERGENIC
2R	18542610	2R_18542610_DEL [dm3] 2R_22655105_DEL [dm6]	GTATTGGGGCTC...	G	2.798e^-4	0.812	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other INTRON CG30196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22109944	3R_22109944_SNP [dm3] 3R_26284222_SNP [dm6]	T	G	2.800e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	13137038	X_13137038_SNP [dm3] X_13243005_SNP [dm6]	A	G	2.801e^-4	0.812	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	6105410	3R_6105410_SNP [dm3] 3R_10279688_SNP [dm6]	C	G	2.808e^-4	0.812	INTRON CG43143
3L	14815465	3L_14815465_SNP [dm3] 3L_14822365_SNP [dm6]	G	A	2.827e^-4	0.812	INTRON CG17839
2R	8933808	2R_8933808_SNP [dm3] 2R_13046303_SNP [dm6]	C	G	2.829e^-4	0.812	UTR_3_PRIME CG13323 DOWNSTREAM CG13323
3R	22134371	3R_22134371_SNP [dm3] 3R_26308649_SNP [dm6]	G	A	2.829e^-4	0.812	INTERGENIC
2L	18328109	2L_18328109_SNP [dm3] 2L_18328109_SNP [dm6]	C	G	2.830e^-4	0.812	INTRON Fas3
X	11944900	X_11944900_SNP [dm3] X_12050867_SNP [dm6]	G	A	2.830e^-4	0.812	INTRON CR43960 & 1 other
2L	1867621	2L_1867621_SNP [dm3] 2L_1867621_SNP [dm6]	G	T	2.831e^-4	0.812	INTRON CG31663
3R	26618205	3R_26618205_SNP [dm3] 3R_30792483_SNP [dm6]	C	T	2.831e^-4	0.812	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
3L	5146943	3L_5146943_SNP [dm3] 3L_5153843_SNP [dm6]	G	A	2.833e^-4	0.812	INTRON Srp54k	TF binding site mE1_TFBS_sens
2L	6120577	2L_6120577_SNP [dm3] 2L_6120577_SNP [dm6]	T	C	2.840e^-4	0.812	UPSTREAM stai DOWNSTREAM CG31642 INTRON stai
2R	14270955	2R_14270955_INS [dm3] 2R_18383450_INS [dm6]	A	AGTATACAAAAAGCAG...	2.849e^-4	0.812	UPSTREAM IM1 & 1 other INTERGENIC
2L	2863927	2L_2863927_SNP [dm3] 2L_2863927_SNP [dm6]	C	T	2.851e^-4	0.812	INTRON CG2991	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19116894	3R_19116894_INS [dm3] 3R_23291172_INS [dm6]	T	GG	2.855e^-4	0.812	UTR_3_PRIME pnt UPSTREAM CG4434
X	13137037	X_13137037_SNP [dm3] X_13243004_SNP [dm6]	C	T	2.855e^-4	0.812	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15090500	2L_15090500_SNP [dm3] 2L_15090500_SNP [dm6]	T	A	2.859e^-4	0.812	INTRON CG15270
3L	712388	3L_712388_DEL [dm3] 3L_712388_DEL [dm6]	AAT	A	2.862e^-4	0.812	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	27100391	3R_27100391_DEL [dm3] 3R_31274669_DEL [dm6]	AA	A	2.864e^-4	0.812	INTERGENIC
2L	11550949	2L_11550949_SNP [dm3] 2L_11550949_SNP [dm6]	C	T	2.864e^-4	0.812	UPSTREAM CR44494 INTERGENIC
3L	10464831	3L_10464831_DEL [dm3] 3L_10471731_DEL [dm6]	AA	G	2.869e^-4	0.812	INTERGENIC
X	3376190	X_3376190_SNP [dm3] X_3482157_SNP [dm6]	A	G	2.872e^-4	0.812	UTR_5_PRIME CG10804 UPSTREAM CG10802 INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	16864219	2R_16864219_SNP [dm3] 2R_20976714_SNP [dm6]	G	A	2.876e^-4	0.812	UPSTREAM CG9344 DOWNSTREAM CG15650 INTRON CG34115	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	11872612	2R_11872612_SNP [dm3] 2R_15985107_SNP [dm6]	T	C	2.882e^-4	0.812	SYNONYMOUS_CODING Strn-Mlck
3R	14291727	3R_14291727_SNP [dm3] 3R_18466005_SNP [dm6]	T	A	2.884e^-4	0.812	INTRON fru
2L	4596035	2L_4596035_SNP [dm3] 2L_4596035_SNP [dm6]	T	A	2.884e^-4	0.812	UPSTREAM dp INTRON dp	TF binding site mE1_TFBS_HSA
X	5120460	X_5120460_SNP [dm3] X_5226427_SNP [dm6]	A	G	2.887e^-4	0.812	INTRON CG15465 & 1 other
3L	1561196	3L_1561196_SNP [dm3] 3L_1561196_SNP [dm6]	G	T	2.900e^-4	0.812	NON_SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	16889790	3R_16889790_SNP [dm3] 3R_21064068_SNP [dm6]	T	G	2.903e^-4	0.812	UTR_5_PRIME Cortactin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	16216199	3L_16216199_SNP [dm3] 3L_16223099_SNP [dm6]	C	T	2.906e^-4	0.812	DOWNSTREAM tRNA:CR32153 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3L	4556835	3L_4556835_SNP [dm3] 3L_4556835_SNP [dm6]	T	C	2.907e^-4	0.812	UPSTREAM CG42540 INTRON CG42540
3R	14660016	3R_14660016_SNP [dm3] 3R_18834294_SNP [dm6]	G	A	2.909e^-4	0.812	INTRON CG18208
X	10517804	X_10517804_SNP [dm3] X_10623771_SNP [dm6]	A	G	2.914e^-4	0.812	UTR_3_PRIME CG9806 UPSTREAM Rab9Db
3R	25759468	3R_25759468_SNP [dm3] 3R_29933746_SNP [dm6]	C	T	2.915e^-4	0.812	SYNONYMOUS_CODING CG42557 UTR_5_PRIME CG42558 UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1585964	3L_1585964_DEL [dm3] 3L_1585964_DEL [dm6]	AATT	A	2.917e^-4	0.812	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_kn mE1_TFBS_Trl
X	13739147	X_13739147_SNP [dm3] X_13845114_SNP [dm6]	A	G	2.923e^-4	0.812	INTRON AMPdeam	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu
2R	10991461	2R_10991461_SNP [dm3] 2R_15103956_SNP [dm6]	C	G	2.925e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	15401421	3L_15401421_SNP [dm3] 3L_15408321_SNP [dm6]	G	A	2.927e^-4	0.812	DOWNSTREAM CG33259 INTERGENIC
X	18279643	X_18279643_DEL [dm3] X_18385610_DEL [dm6]	AC	G	2.928e^-4	0.812	UPSTREAM betaCOP INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11322522	2R_11322522_SNP [dm3] 2R_15435017_SNP [dm6]	C	A	2.930e^-4	0.812	INTRON CG43729	TF binding site mE1_TFBS_chinmo
X	14121085	X_14121085_SNP [dm3] X_14227052_SNP [dm6]	C	A	2.932e^-4	0.812	SYNONYMOUS_CODING mRpL38	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14313189	3L_14313189_SNP [dm3] 3L_14320089_SNP [dm6]	A	G	2.933e^-4	0.812	INTRON fz
X	19873187	X_19873187_INS [dm3] X_19979154_INS [dm6]	A	ATTTTCTATTAAGAGATAT...	2.933e^-4	0.812	INTERGENIC
3L	1629802	3L_1629802_SNP [dm3] 3L_1629802_SNP [dm6]	C	T	2.950e^-4	0.812	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	19283797	3R_19283797_SNP [dm3] 3R_23458075_SNP [dm6]	G	A	2.952e^-4	0.812	INTRON CG4374
3L	9201306	3L_9201306_SNP [dm3] 3L_9208206_SNP [dm6]	C	T	2.953e^-4	0.812	UTR_5_PRIME Slc45-1 UPSTREAM Slc45-1
X	6898563	X_6898563_SNP [dm3] X_7004530_SNP [dm6]	T	C	2.958e^-4	0.812	DOWNSTREAM Inx2 INTRON Inx7
2L	9446671	2L_9446671_SNP [dm3] 2L_9446671_SNP [dm6]	A	C	2.969e^-4	0.812	INTRON numb	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
X	6898428	X_6898428_SNP [dm3] X_7004395_SNP [dm6]	A	C	2.973e^-4	0.812	DOWNSTREAM Inx2 INTRON Inx7
X	14154449	X_14154449_SNP [dm3] X_14260416_SNP [dm6]	G	T	2.974e^-4	0.812	UPSTREAM CG1461 INTERGENIC
X	8042792	X_8042792_SNP [dm3] X_8148759_SNP [dm6]	G	A	2.978e^-4	0.812	UPSTREAM CG10959 DOWNSTREAM CG2129 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	10264877	3L_10264877_SNP [dm3] 3L_10271777_SNP [dm6]	G	A	2.982e^-4	0.812	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	19472074	3L_19472074_SNP [dm3] 3L_19478974_SNP [dm6]	G	A	2.995e^-4	0.812	UPSTREAM CR32207 DOWNSTREAM CR42842 INTERGENIC
2L	4292764	2L_4292764_SNP [dm3] 2L_4292764_SNP [dm6]	T	C	2.995e^-4	0.812	INTRON tutl
2L	8702856	2L_8702856_SNP [dm3] 2L_8702856_SNP [dm6]	A	T	2.997e^-4	0.812	UPSTREAM CR44992 INTRON Hnf4
3L	17665322	3L_17665322_SNP [dm3] 3L_17672222_SNP [dm6]	T	C	2.998e^-4	0.812	INTRON CG34251
3L	14487853	3L_14487853_SNP [dm3] 3L_14494753_SNP [dm6]	G	C	3.007e^-4	0.812	INTRON bbg
2L	8602199	2L_8602199_SNP [dm3] 2L_8602199_SNP [dm6]	A	C	3.010e^-4	0.812	INTRON Sema-1a
X	7897466	X_7897466_SNP [dm3] X_8003433_SNP [dm6]	T	C	3.020e^-4	0.812	INTRON Tbh
3L	3910709	3L_3910709_SNP [dm3] 3L_3910709_SNP [dm6]	G	T	3.026e^-4	0.812	UTR_3_PRIME Eip63F-1 UPSTREAM mge DOWNSTREAM Eip63F-1
2R	12111006	2R_12111006_SNP [dm3] 2R_16223501_SNP [dm6]	G	A	3.033e^-4	0.812	SYNONYMOUS_CODING CG15706 UPSTREAM CG7798 DOWNSTREAM CR43898
3L	14349588	3L_14349588_SNP [dm3] 3L_14356488_SNP [dm6]	G	A	3.034e^-4	0.812	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10382797	2R_10382797_SNP [dm3] 2R_14495292_SNP [dm6]	A	G	3.044e^-4	0.812	SYNONYMOUS_CODING L	TF binding site mE1_TFBS_cad
3R	20919936	3R_20919936_SNP [dm3] 3R_25094214_SNP [dm6]	T	C	3.047e^-4	0.812	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	19116850	3R_19116850_INS [dm3] 3R_23291128_INS [dm6]	G	GTT	3.053e^-4	0.812	UTR_3_PRIME pnt UPSTREAM CG4434
2R	18418701	2R_18418701_SNP [dm3] 2R_22531196_SNP [dm6]	A	C	3.054e^-4	0.812	INTRON px
2R	18418702	2R_18418702_SNP [dm3] 2R_22531197_SNP [dm6]	C	A	3.054e^-4	0.812	INTRON px
2L	19737343	2L_19737343_SNP [dm3] 2L_19737343_SNP [dm6]	G	T	3.055e^-4	0.812	DOWNSTREAM Nf-YB INTERGENIC
2L	9053262	2L_9053262_SNP [dm3] 2L_9053262_SNP [dm6]	T	A	3.056e^-4	0.812	INTRON CG31708
2L	9463855	2L_9463855_SNP [dm3] 2L_9463855_SNP [dm6]	C	T	3.068e^-4	0.812	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_kn
3R	22618986	3R_22618986_SNP [dm3] 3R_26793264_SNP [dm6]	A	T	3.070e^-4	0.812	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1406565	3L_1406565_SNP [dm3] 3L_1406565_SNP [dm6]	A	G	3.073e^-4	0.812	INTRON Ptp61F
3L	18216668	3L_18216668_SNP [dm3] 3L_18223568_SNP [dm6]	G	A	3.075e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_inv
3L	10450795	3L_10450795_SNP [dm3] 3L_10457695_SNP [dm6]	G	A	3.084e^-4	0.812	INTERGENIC
3L	10450797	3L_10450797_SNP [dm3] 3L_10457697_SNP [dm6]	G	A	3.084e^-4	0.812	INTERGENIC
3R	18494639	3R_18494639_SNP [dm3] 3R_22668917_SNP [dm6]	T	G	3.087e^-4	0.812	INTRON CG45058	TF binding site BDTNP1_TFBS_dl
2R	16253858	2R_16253858_SNP [dm3] 2R_20366353_SNP [dm6]	A	G	3.088e^-4	0.812	INTERGENIC
2L	14702724	2L_14702724_SNP [dm3] 2L_14702724_SNP [dm6]	C	G	3.090e^-4	0.812	INTERGENIC
3L	15693061	3L_15693061_SNP [dm3] 3L_15699961_SNP [dm6]	C	T	3.091e^-4	0.812	UPSTREAM comm2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	12600147	X_12600147_SNP [dm3] X_12706114_SNP [dm6]	C	A	3.092e^-4	0.812	UTR_5_PRIME CG15725 INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9943554	X_9943554_SNP [dm3] X_10049521_SNP [dm6]	G	T	3.093e^-4	0.812	NON_SYNONYMOUS_CODING Cht6
2R	13558475	2R_13558475_SNP [dm3] 2R_17670970_SNP [dm6]	T	C	3.096e^-4	0.812	UPSTREAM CR44404 DOWNSTREAM CG30108 & 2 others INTERGENIC
3L	7723401	3L_7723401_SNP [dm3] 3L_7730301_SNP [dm6]	C	T	3.099e^-4	0.812	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19871464	X_19871464_SNP [dm3] X_19977431_SNP [dm6]	A	G	3.102e^-4	0.812	INTERGENIC
3R	20347647	3R_20347647_SNP [dm3] 3R_24521925_SNP [dm6]	T	C	3.104e^-4	0.812	UTR_3_PRIME Pp1alpha-96A DOWNSTREAM Pp1alpha-96A & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17302476	2L_17302476_SNP [dm3] 2L_17302476_SNP [dm6]	A	C	3.113e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_sbb
2R	5395530	2R_5395530_SNP [dm3] 2R_9508025_SNP [dm6]	A	C	3.118e^-4	0.812	UTR_5_PRIME brp INTRON brp	TF binding site mE1_TFBS_Trl
2L	17861776	2L_17861776_SNP [dm3] 2L_17861776_SNP [dm6]	T	A	3.119e^-4	0.812	INTRON CadN2
2L	15355720	2L_15355720_SNP [dm3] 2L_15355720_SNP [dm6]	T	G	3.119e^-4	0.812	INTERGENIC
X	13136787	X_13136787_SNP [dm3] X_13242754_SNP [dm6]	C	T	3.123e^-4	0.812	INTRON mew	TF binding site BDTNP1_TFBS_da
3R	15130796	3R_15130796_SNP [dm3] 3R_19305074_SNP [dm6]	G	A	3.133e^-4	0.812	SYNONYMOUS_CODING Dl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14394850	3R_14394850_SNP [dm3] 3R_18569128_SNP [dm6]	C	A	3.140e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11930045	2L_11930045_SNP [dm3] 2L_11930045_SNP [dm6]	C	T	3.146e^-4	0.812	INTERGENIC
2L	15917504	2L_15917504_SNP [dm3] 2L_15917504_SNP [dm6]	T	A	3.151e^-4	0.812	UTR_3_PRIME CG13244 INTRON beat-Ib
3R	26618148	3R_26618148_SNP [dm3] 3R_30792426_SNP [dm6]	T	G	3.155e^-4	0.812	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
3R	2876491	3R_2876491_SNP [dm3] 3R_7050769_SNP [dm6]	C	T	3.162e^-4	0.812	INTERGENIC
2L	12418606	2L_12418606_SNP [dm3] 2L_12418606_SNP [dm6]	C	T	3.168e^-4	0.812	INTRON vir-1
2L	17861799	2L_17861799_SNP [dm3] 2L_17861799_SNP [dm6]	A	C	3.176e^-4	0.812	INTRON CadN2
3R	23294921	3R_23294921_SNP [dm3] 3R_27469199_SNP [dm6]	G	C	3.177e^-4	0.812	INTERGENIC
X	3377141	X_3377141_SNP [dm3] X_3483108_SNP [dm6]	G	C	3.180e^-4	0.812	UPSTREAM CG10804 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	21677059	3R_21677059_SNP [dm3] 3R_25851337_SNP [dm6]	C	T	3.183e^-4	0.812	UPSTREAM CG5886 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	20176231	3L_20176231_SNP [dm3] 3L_20183131_SNP [dm6]	T	A	3.204e^-4	0.812	INTRON CG42674	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	22364820	X_22364820_SNP [dm3] X_22962984_SNP [dm6]	C	G	3.204e^-4	0.812	UPSTREAM CG40485 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11129015	2R_11129015_SNP [dm3] 2R_15241510_SNP [dm6]	A	G	3.209e^-4	0.812	UTR_5_PRIME Fs
3R	19264837	3R_19264837_DEL [dm3] 3R_23439115_DEL [dm6]	TT	T	3.210e^-4	0.812	INTRON CG4374
3R	5129982	3R_5129982_SNP [dm3] 3R_9304260_SNP [dm6]	C	G	3.211e^-4	0.812	INTRON CG8861
3L	14813879	3L_14813879_SNP [dm3] 3L_14820779_SNP [dm6]	A	T	3.213e^-4	0.812	INTRON CG17839
X	19873199	X_19873199_INS [dm3] X_19979166_INS [dm6]	T	TCTGTAGTT	3.218e^-4	0.812	INTERGENIC
2R	15257416	2R_15257416_SNP [dm3] 2R_19369911_SNP [dm6]	A	T	3.219e^-4	0.812	INTRON CG9416
3R	12497505	3R_12497505_SNP [dm3] 3R_16671783_SNP [dm6]	C	T	3.220e^-4	0.812	INTRON Ubx
3L	9735039	3L_9735039_SNP [dm3] 3L_9741939_SNP [dm6]	A	T	3.232e^-4	0.812	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15941043	2R_15941043_SNP [dm3] 2R_20053538_SNP [dm6]	T	G	3.234e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
X	9497043	X_9497043_SNP [dm3] X_9603010_SNP [dm6]	G	A	3.235e^-4	0.812	SYNONYMOUS_CODING Gga	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10025717	3L_10025717_DEL [dm3] 3L_10032617_DEL [dm6]	GCTTTTGTTTAGTC...	G	3.239e^-4	0.812	INTRON dpr6
3L	11276747	3L_11276747_SNP [dm3] 3L_11283647_SNP [dm6]	C	T	3.244e^-4	0.812	INTERGENIC
2R	15296567	2R_15296567_SNP [dm3] 2R_19409062_SNP [dm6]	C	T	3.246e^-4	0.812	UTR_3_PRIME hts DOWNSTREAM hts INTRON hts
3R	17345258	3R_17345258_SNP [dm3] 3R_21519536_SNP [dm6]	C	T	3.250e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17345296	3R_17345296_SNP [dm3] 3R_21519574_SNP [dm6]	A	T	3.250e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17345257	3R_17345257_SNP [dm3] 3R_21519535_SNP [dm6]	T	G	3.251e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8137681	2R_8137681_SNP [dm3] 2R_12250176_SNP [dm6]	A	C	3.261e^-4	0.812	INTERGENIC
2R	14271060	2R_14271060_SNP [dm3] 2R_18383555_SNP [dm6]	A	T	3.261e^-4	0.812	UPSTREAM IM1 & 1 other INTERGENIC
2R	14271062	2R_14271062_SNP [dm3] 2R_18383557_SNP [dm6]	T	G	3.261e^-4	0.812	UPSTREAM IM1 & 1 other INTERGENIC
X	14090881	X_14090881_SNP [dm3] X_14196848_SNP [dm6]	T	C	3.262e^-4	0.812	SYNONYMOUS_CODING yl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10085825	2L_10085825_SNP [dm3] 2L_10085825_SNP [dm6]	C	T	3.268e^-4	0.812	INTRON CG44153
2L	9445153	2L_9445153_SNP [dm3] 2L_9445153_SNP [dm6]	T	C	3.271e^-4	0.812	INTRON numb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15384897	3R_15384897_DEL [dm3] 3R_19559175_DEL [dm6]	TT	T	3.277e^-4	0.812	INTRON Dys
2R	14271068	2R_14271068_DEL [dm3] 2R_18383563_DEL [dm6]	TGCTTTT	T	3.277e^-4	0.812	UPSTREAM IM1 & 2 others INTERGENIC
2R	20029717	2R_20029717_SNP [dm3] 2R_24142194_SNP [dm6]	T	C	3.287e^-4	0.812	INTRON Dat
2R	15841021	2R_15841021_SNP [dm3] 2R_19953516_SNP [dm6]	C	T	3.289e^-4	0.812	UPSTREAM CG44622 INTERGENIC
X	12355327	X_12355327_SNP [dm3] X_12461294_SNP [dm6]	A	G	3.289e^-4	0.812	INTRON Rab40
2R	10998553	2R_10998553_SNP [dm3] 2R_15111048_SNP [dm6]	C	T	3.290e^-4	0.812	INTERGENIC
2R	5234075	2R_5234075_SNP [dm3] 2R_9346570_SNP [dm6]	T	G	3.293e^-4	0.812	SYNONYMOUS_CODING Or45a INTRON CG13954 & 1 other	TF binding site mE1_TFBS_chinmo
3L	8458809	3L_8458809_SNP [dm3] 3L_8465709_SNP [dm6]	C	A	3.299e^-4	0.813	SYNONYMOUS_CODING Gug	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18112916	3L_18112916_SNP [dm3] 3L_18119816_SNP [dm6]	A	C	3.321e^-4	0.816	UTR_5_PRIME CG7341 DOWNSTREAM CG32195	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	15320685	3L_15320685_SNP [dm3] 3L_15327585_SNP [dm6]	A	T	3.325e^-4	0.816	INTERGENIC
2R	3972263	2R_3972263_SNP [dm3] 2R_8084758_SNP [dm6]	C	A	3.338e^-4	0.816	NON_SYNONYMOUS_CODING sut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11606033	3L_11606033_SNP [dm3] 3L_11612933_SNP [dm6]	A	C	3.340e^-4	0.816	NON_SYNONYMOUS_CODING Muc68Ca
X	20262270	X_20262270_INS [dm3] X_20391243_INS [dm6]	A	ATCAATAATAATTCAA...	3.341e^-4	0.816	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12665890	X_12665890_SNP [dm3] X_12771857_SNP [dm6]	C	G	3.351e^-4	0.816	UTR_3_PRIME CG3812 & 1 other DOWNSTREAM CG3812
3R	17345268	3R_17345268_SNP [dm3] 3R_21519546_SNP [dm6]	T	C	3.352e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16685557	X_16685557_SNP [dm3] X_16791524_SNP [dm6]	T	A	3.352e^-4	0.816	UPSTREAM CG4768 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17877822	3R_17877822_SNP [dm3] 3R_22052100_SNP [dm6]	C	T	3.355e^-4	0.816	INTRON how	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	16864024	2R_16864024_SNP [dm3] 2R_20976519_SNP [dm6]	A	C	3.359e^-4	0.816	UPSTREAM CG9344 INTRON CG34115	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	3265694	2R_3265694_SNP [dm3] 2R_7378189_SNP [dm6]	C	T	3.362e^-4	0.816	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
X	12355375	X_12355375_SNP [dm3] X_12461342_SNP [dm6]	T	C	3.366e^-4	0.816	INTRON Rab40
X	6451158	X_6451158_SNP [dm3] X_6557125_SNP [dm6]	G	A	3.369e^-4	0.816	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
X	9201444	X_9201444_SNP [dm3] X_9307411_SNP [dm6]	T	A	3.380e^-4	0.818	INTERGENIC
2L	2707543	2L_2707543_SNP [dm3] 2L_2707543_SNP [dm6]	C	A	3.388e^-4	0.818	INTRON CG31690
2R	11178135	2R_11178135_SNP [dm3] 2R_15290630_SNP [dm6]	T	C	3.396e^-4	0.819	INTRON Trpm
3R	15325920	3R_15325920_SNP [dm3] 3R_19500198_SNP [dm6]	T	C	3.403e^-4	0.819	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	13557740	2R_13557740_SNP [dm3] 2R_17670235_SNP [dm6]	C	T	3.416e^-4	0.819	SYNONYMOUS_CODING CG30109 UPSTREAM CR44404 DOWNSTREAM eIF3-S8 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5123133	X_5123133_SNP [dm3] X_5229100_SNP [dm6]	A	G	3.421e^-4	0.819	INTRON CG15465 & 1 other
2R	3077646	2R_3077646_SNP [dm3] 2R_7190141_SNP [dm6]	T	G	3.433e^-4	0.819	INTRON pk
2R	3972446	2R_3972446_INS [dm3] 2R_8084941_INS [dm6]	C	CATTCATTT	3.435e^-4	0.819	INTRON sut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19317553	2R_19317553_SNP [dm3] 2R_23430030_SNP [dm6]	C	T	3.437e^-4	0.819	INTRON CG9815
3R	25760016	3R_25760016_SNP [dm3] 3R_29934294_SNP [dm6]	A	C	3.437e^-4	0.819	NON_SYNONYMOUS_CODING CG42558 UTR_3_PRIME CG42557 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad
2R	11175856	2R_11175856_SNP [dm3] 2R_15288351_SNP [dm6]	C	T	3.444e^-4	0.819	INTRON Trpm
3L	14561228	3L_14561228_SNP [dm3] 3L_14568128_SNP [dm6]	T	G	3.446e^-4	0.819	UTR_3_PRIME CG42758
2R	8137696	2R_8137696_SNP [dm3] 2R_12250191_SNP [dm6]	A	T	3.450e^-4	0.819	INTERGENIC
X	14842374	X_14842374_INS [dm3] X_14948341_INS [dm6]	A	ACATAGTCCATAAGGTA...	3.461e^-4	0.819	INTRON pdgy	TF binding site mE1_TFBS_HSA
X	17503877	X_17503877_SNP [dm3] X_17609844_SNP [dm6]	G	T	3.461e^-4	0.819	INTERGENIC
3L	16202369	3L_16202369_SNP [dm3] 3L_16209269_SNP [dm6]	G	A	3.462e^-4	0.819	INTERGENIC	TF binding site mE1_TFBS_cad
2R	16864990	2R_16864990_SNP [dm3] 2R_20977485_SNP [dm6]	G	T	3.466e^-4	0.819	UTR_3_PRIME CG9344 DOWNSTREAM CG15650 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	15838896	2R_15838896_SNP [dm3] 2R_19951391_SNP [dm6]	C	T	3.470e^-4	0.819	START_GAINED CG10822 UTR_5_PRIME CG10822
2R	16837257	2R_16837257_SNP [dm3] 2R_20949752_SNP [dm6]	C	T	3.476e^-4	0.819	UPSTREAM CG33704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9147026	2R_9147026_SNP [dm3] 2R_13259521_SNP [dm6]	T	A	3.482e^-4	0.819	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2L	20593831	2L_20593831_SNP [dm3] 2L_20593831_SNP [dm6]	G	C	3.485e^-4	0.819	INTRON CR44909
3R	22936798	3R_22936798_SNP [dm3] 3R_27111076_SNP [dm6]	C	T	3.485e^-4	0.819	DOWNSTREAM CR45209 INTRON gb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18930447	2L_18930447_SNP [dm3] 2L_18930447_SNP [dm6]	G	A	3.488e^-4	0.819	INTRON ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10929901	2R_10929901_SNP [dm3] 2R_15042396_SNP [dm6]	C	T	3.490e^-4	0.819	DOWNSTREAM hbs INTERGENIC
X	14154365	X_14154365_DEL [dm3] X_14260332_DEL [dm6]	AA	C	3.490e^-4	0.819	UPSTREAM CG1461 INTERGENIC
X	10443026	X_10443026_SNP [dm3] X_10548993_SNP [dm6]	C	T	3.511e^-4	0.819	INTRON spri
3L	19496781	3L_19496781_SNP [dm3] 3L_19503681_SNP [dm6]	G	A	3.516e^-4	0.819	START_GAINED CG9452 UTR_5_PRIME CG9452
3L	14556612	3L_14556612_SNP [dm3] 3L_14563512_SNP [dm6]	A	G	3.520e^-4	0.819	DOWNSTREAM CG34039 INTERGENIC	TF binding site mE1_TFBS_Kr
2L	388595	2L_388595_SNP [dm3] 2L_388595_SNP [dm6]	G	T	3.521e^-4	0.819	INTERGENIC
2R	16253834	2R_16253834_SNP [dm3] 2R_20366329_SNP [dm6]	C	T	3.524e^-4	0.819	INTERGENIC
3R	16710155	3R_16710155_SNP [dm3] 3R_20884433_SNP [dm6]	A	G	3.525e^-4	0.819	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	17456726	3L_17456726_SNP [dm3] 3L_17463626_SNP [dm6]	A	G	3.527e^-4	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	19836530	2L_19836530_SNP [dm3] 2L_19836530_SNP [dm6]	A	G	3.533e^-4	0.819	INTRON sick	TF binding site mE1_TFBS_cad
3L	4737892	3L_4737892_SNP [dm3] 3L_4737892_SNP [dm6]	T	C	3.537e^-4	0.819	INTRON RhoGEF64C
3L	14067639	3L_14067639_SNP [dm3] 3L_14074539_SNP [dm6]	G	A	3.540e^-4	0.819	INTRON Pex1
2R	14271066	2R_14271066_SNP [dm3] 2R_18383561_SNP [dm6]	T	A	3.542e^-4	0.819	UPSTREAM IM1 & 1 other INTERGENIC
3R	16709971	3R_16709971_SNP [dm3] 3R_20884249_SNP [dm6]	A	T	3.547e^-4	0.819	INTERGENIC	TF binding site mE1_TFBS_cad
3R	23624603	3R_23624603_SNP [dm3] 3R_27798881_SNP [dm6]	A	C	3.552e^-4	0.819	INTRON CG34353
2L	7207266	2L_7207266_SNP [dm3] 2L_7207266_SNP [dm6]	T	A	3.553e^-4	0.819	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784
2R	7157406	2R_7157406_SNP [dm3] 2R_11269901_SNP [dm6]	T	C	3.564e^-4	0.821	NON_SYNONYMOUS_CODING Cpr47Ef	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21602306	3L_21602306_SNP [dm3] 3L_21609206_SNP [dm6]	A	C	3.575e^-4	0.821	INTRON TfAP-2
2L	9487588	2L_9487588_SNP [dm3] 2L_9487588_SNP [dm6]	A	G	3.577e^-4	0.821	INTERGENIC
X	15413680	X_15413680_SNP [dm3] X_15519647_SNP [dm6]	A	G	3.577e^-4	0.821	INTRON Ac13E
3L	3207062	3L_3207062_SNP [dm3] 3L_3207062_SNP [dm6]	C	A	3.589e^-4	0.821	SYNONYMOUS_CODING CG32269 UTR_3_PRIME CG32270 UPSTREAM CG33160 INTRON gry	TF binding site mE1_TFBS_cad
3R	2867864	3R_2867864_SNP [dm3] 3R_7042142_SNP [dm6]	A	C	3.597e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	15464984	X_15464984_SNP [dm3] X_15570951_SNP [dm6]	A	C	3.598e^-4	0.821	STOP_LOST CG15643 DOWNSTREAM CG7860	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5462709	X_5462709_DEL [dm3] X_5568676_DEL [dm6]	TT	T	3.610e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	15045602	3R_15045602_SNP [dm3] 3R_19219880_SNP [dm6]	T	C	3.611e^-4	0.821	INTRON vib
X	18260542	X_18260542_SNP [dm3] X_18366509_SNP [dm6]	G	T	3.617e^-4	0.821	START_GAINED CrebB UTR_5_PRIME CrebB UPSTREAM CrebB	TF binding site BDTNP1_TFBS_dl
X	10030796	X_10030796_SNP [dm3] X_10136763_SNP [dm6]	G	A	3.620e^-4	0.821	INTRON CR44894 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10895007	X_10895007_SNP [dm3] X_11000974_SNP [dm6]	A	G	3.621e^-4	0.821	INTRON CG42339
2R	11964279	2R_11964279_SNP [dm3] 2R_16076774_SNP [dm6]	T	C	3.623e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	9463950	2L_9463950_SNP [dm3] 2L_9463950_SNP [dm6]	T	C	3.627e^-4	0.821	UTR_3_PRIME numb DOWNSTREAM numb
2R	13237688	2R_13237688_SNP [dm3] 2R_17350183_SNP [dm6]	T	C	3.628e^-4	0.821	INTRON mbl
3L	18262635	3L_18262635_SNP [dm3] 3L_18269535_SNP [dm6]	T	A	3.636e^-4	0.821	INTERGENIC
X	21172679	X_21172679_DEL [dm3] X_21301652_DEL [dm6]	AA	A	3.637e^-4	0.821	INTRON CG1718
X	18262391	X_18262391_INS [dm3] X_18368358_INS [dm6]	G	GG	3.647e^-4	0.822	INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	5827042	X_5827042_INS [dm3] X_5933009_INS [dm6]	A	AA	3.649e^-4	0.822	INTRON CG3726
3L	14816252	3L_14816252_SNP [dm3] 3L_14823152_SNP [dm6]	A	G	3.652e^-4	0.822	INTRON CG17839
3L	21602857	3L_21602857_SNP [dm3] 3L_21609757_SNP [dm6]	T	C	3.662e^-4	0.822	SYNONYMOUS_CODING TfAP-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	7721688	3L_7721688_SNP [dm3] 3L_7728588_SNP [dm6]	A	G	3.677e^-4	0.822	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
3L	3103926	3L_3103926_SNP [dm3] 3L_3103926_SNP [dm6]	C	T	3.678e^-4	0.822	INTRON Cht7
3L	13172987	3L_13172987_INS [dm3] 3L_13179887_INS [dm6]	G	GA	3.681e^-4	0.822	INTERGENIC
2R	18475339	2R_18475339_SNP [dm3] 2R_22587834_SNP [dm6]	A	C	3.681e^-4	0.822	INTRON dnr1
2R	18475340	2R_18475340_SNP [dm3] 2R_22587835_SNP [dm6]	G	A	3.681e^-4	0.822	INTRON dnr1
X	14845226	X_14845226_SNP [dm3] X_14951193_SNP [dm6]	T	C	3.683e^-4	0.822	UTR_5_PRIME pdgy UPSTREAM pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	21876370	3R_21876370_SNP [dm3] 3R_26050648_SNP [dm6]	T	G	3.689e^-4	0.822	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19742727	2L_19742727_SNP [dm3] 2L_19742727_SNP [dm6]	C	T	3.692e^-4	0.822	UPSTREAM CR44906 DOWNSTREAM CG10631 INTERGENIC
2L	19480177	2L_19480177_SNP [dm3] 2L_19480177_SNP [dm6]	A	G	3.702e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	9504688	2L_9504688_SNP [dm3] 2L_9504688_SNP [dm6]	G	A	3.702e^-4	0.822	SYNONYMOUS_CODING CG33298
2L	7451999	2L_7451999_SNP [dm3] 2L_7451999_SNP [dm6]	G	A	3.712e^-4	0.823	UPSTREAM santa-maria DOWNSTREAM Gr28a INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3R	10272628	3R_10272628_SNP [dm3] 3R_14446906_SNP [dm6]	C	T	3.713e^-4	0.823	INTRON cv-c
2R	3078696	2R_3078696_SNP [dm3] 2R_7191191_SNP [dm6]	C	T	3.741e^-4	0.826	INTRON pk	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
2R	5690915	2R_5690915_INS [dm3] 2R_9803410_INS [dm6]	G	GCG	3.741e^-4	0.826	INTRON CG1688
2R	8452798	2R_8452798_SNP [dm3] 2R_12565293_SNP [dm6]	C	A	3.747e^-4	0.826	UPSTREAM CG33775 & 1 other INTERGENIC
2L	21911710	2L_21911710_INS [dm3] 2L_21911710_INS [dm6]	A	AAATA	3.750e^-4	0.826	INTERGENIC
3L	7726169	3L_7726169_SNP [dm3] 3L_7733069_SNP [dm6]	G	T	3.754e^-4	0.826	UPSTREAM CG8492 DOWNSTREAM Snmp2 INTRON CG32373
3L	7071913	3L_7071913_SNP [dm3] 3L_7078813_SNP [dm6]	A	C	3.755e^-4	0.826	INTERGENIC
3R	12972846	3R_12972846_SNP [dm3] 3R_17147124_SNP [dm6]	C	T	3.766e^-4	0.826	NON_SYNONYMOUS_CODING m-cup
2L	5925781	2L_5925781_SNP [dm3] 2L_5925781_SNP [dm6]	C	A	3.781e^-4	0.826	UPSTREAM dsf EXON CR43926	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11276303	3L_11276303_SNP [dm3] 3L_11283203_SNP [dm6]	A	T	3.782e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7113595	2L_7113595_SNP [dm3] 2L_7113595_SNP [dm6]	A	G	3.791e^-4	0.826	INTRON Pvf3
3L	18870984	3L_18870984_INS [dm3] 3L_18877884_INS [dm6]	T	TT	3.793e^-4	0.826	UTR_3_PRIME Ugt DOWNSTREAM CG3961
3L	3966395	3L_3966395_SNP [dm3] 3L_3966395_SNP [dm6]	C	T	3.795e^-4	0.826	INTERGENIC
2R	11872585	2R_11872585_SNP [dm3] 2R_15985080_SNP [dm6]	A	G	3.801e^-4	0.826	SYNONYMOUS_CODING Strn-Mlck
2R	12456228	2R_12456228_SNP [dm3] 2R_16568723_SNP [dm6]	T	C	3.804e^-4	0.826	SYNONYMOUS_CODING CG4945	TF binding site mE1_TFBS_cad
2L	7343130	2L_7343130_SNP [dm3] 2L_7343130_SNP [dm6]	G	T	3.805e^-4	0.826	INTRON Wnt6
X	13265005	X_13265005_SNP [dm3] X_13370972_SNP [dm6]	G	A	3.805e^-4	0.826	UPSTREAM CG1640 DOWNSTREAM dmrt11E INTRON CG1640	TF binding site BDTNP1_TFBS_dl
X	7613947	X_7613947_SNP [dm3] X_7719914_SNP [dm6]	C	T	3.808e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4308047	3R_4308047_SNP [dm3] 3R_8482325_SNP [dm6]	G	T	3.809e^-4	0.826	INTERGENIC
3R	4606495	3R_4606495_SNP [dm3] 3R_8780773_SNP [dm6]	T	C	3.812e^-4	0.826	UTR_5_PRIME CG33189 UPSTREAM CG33191 & 1 other DOWNSTREAM Pif1A INTRON Pif1B & 1 other	TF binding site mE1_TFBS_cad
2R	7157912	2R_7157912_SNP [dm3] 2R_11270407_SNP [dm6]	G	C	3.815e^-4	0.826	INTRON Cpr47Ef
3R	19061699	3R_19061699_SNP [dm3] 3R_23235977_SNP [dm6]	T	C	3.829e^-4	0.827	INTRON CG4467
3R	13360593	3R_13360593_SNP [dm3] 3R_17534871_SNP [dm6]	C	T	3.834e^-4	0.827	UTR_5_PRIME P5cr-2 UPSTREAM P5cr-2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	5138020	3R_5138020_SNP [dm3] 3R_9312298_SNP [dm6]	C	T	3.842e^-4	0.827	INTRON CG8861
2R	11409484	2R_11409484_SNP [dm3] 2R_15521979_SNP [dm6]	T	C	3.846e^-4	0.827	INTRON Khc-73
2R	14269786	2R_14269786_SNP [dm3] 2R_18382281_SNP [dm6]	G	T	3.848e^-4	0.827	UPSTREAM CG43202 DOWNSTREAM IM23 INTERGENIC
2R	3265898	2R_3265898_SNP [dm3] 2R_7378393_SNP [dm6]	C	A	3.852e^-4	0.827	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
3L	1405187	3L_1405187_SNP [dm3] 3L_1405187_SNP [dm6]	T	G	3.858e^-4	0.827	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14271099	2R_14271099_SNP [dm3] 2R_18383594_SNP [dm6]	G	A	3.866e^-4	0.827	UPSTREAM IM1 & 2 others INTERGENIC
2R	16864986	2R_16864986_SNP [dm3] 2R_20977481_SNP [dm6]	A	G	3.866e^-4	0.827	UTR_3_PRIME CG9344 DOWNSTREAM CG15650 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	11393904	2L_11393904_SNP [dm3] 2L_11393904_SNP [dm6]	C	T	3.866e^-4	0.827	INTERGENIC	regulatory region REDfly_CRMs
3R	20565182	3R_20565182_SNP [dm3] 3R_24739460_SNP [dm6]	T	G	3.873e^-4	0.828	INTRON tok
X	20335590	X_20335590_SNP [dm3] X_20464563_SNP [dm6]	G	A	3.880e^-4	0.828	INTRON CG32506
3L	11280965	3L_11280965_SNP [dm3] 3L_11287865_SNP [dm6]	C	T	3.881e^-4	0.828	DOWNSTREAM CG6175 INTERGENIC
3L	7611953	3L_7611953_INS [dm3] 3L_7618853_INS [dm6]	A	AA	3.899e^-4	0.828	INTRON CG33275
X	16222227	X_16222227_SNP [dm3] X_16328194_SNP [dm6]	C	T	3.903e^-4	0.828	UTR_3_PRIME CalpC DOWNSTREAM CG9919
3R	15325848	3R_15325848_SNP [dm3] 3R_19500126_SNP [dm6]	C	T	3.905e^-4	0.828	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14376089	3L_14376089_SNP [dm3] 3L_14382989_SNP [dm6]	T	G	3.911e^-4	0.828	UTR_3_PRIME CG43120
3L	3699414	3L_3699414_SNP [dm3] 3L_3699414_SNP [dm6]	C	T	3.916e^-4	0.828	INTERGENIC
3L	4719151	3L_4719151_SNP [dm3] 3L_4719151_SNP [dm6]	C	A	3.920e^-4	0.828	INTRON RhoGEF64C
X	12665748	X_12665748_SNP [dm3] X_12771715_SNP [dm6]	C	T	3.920e^-4	0.828	UTR_3_PRIME CG3812 DOWNSTREAM CG32647 & 1 other
2R	3546744	2R_3546744_SNP [dm3] 2R_7659239_SNP [dm6]	G	A	3.921e^-4	0.828	DOWNSTREAM CG1339 & 1 other INTERGENIC
3R	21141048	3R_21141048_SNP [dm3] 3R_25315326_SNP [dm6]	G	T	3.924e^-4	0.828	INTRON CG10559
3L	7943127	3L_7943127_SNP [dm3] 3L_7950027_SNP [dm6]	C	T	3.932e^-4	0.829	INTRON exex
2L	10085047	2L_10085047_SNP [dm3] 2L_10085047_SNP [dm6]	G	C	3.967e^-4	0.836	INTRON CG44153
3L	16202334	3L_16202334_SNP [dm3] 3L_16209234_SNP [dm6]	A	T	3.979e^-4	0.837	INTERGENIC	TF binding site mE1_TFBS_cad
2R	4176364	2R_4176364_SNP [dm3] 2R_8288859_SNP [dm6]	T	C	4.004e^-4	0.841	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	18909753	3R_18909753_SNP [dm3] 3R_23084031_SNP [dm6]	G	A	4.009e^-4	0.841	INTRON CG13830	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8596809	3R_8596809_SNP [dm3] 3R_12771087_SNP [dm6]	C	T	4.015e^-4	0.841	INTRON beat-Vc
3L	1042781	3L_1042781_SNP [dm3] 3L_1042781_SNP [dm6]	T	C	4.023e^-4	0.841	INTRON bab1
2L	10129257	2L_10129257_SNP [dm3] 2L_10129257_SNP [dm6]	C	A	4.029e^-4	0.841	INTRON CG44153
3L	5650459	3L_5650459_SNP [dm3] 3L_5657359_SNP [dm6]	C	G	4.035e^-4	0.841	UTR_3_PRIME lin-28 UPSTREAM sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4292732	2L_4292732_SNP [dm3] 2L_4292732_SNP [dm6]	G	T	4.036e^-4	0.841	INTRON tutl
3L	1405186	3L_1405186_SNP [dm3] 3L_1405186_SNP [dm6]	C	G	4.040e^-4	0.841	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9446658	2L_9446658_SNP [dm3] 2L_9446658_SNP [dm6]	A	C	4.042e^-4	0.841	INTRON numb	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	9446659	2L_9446659_SNP [dm3] 2L_9446659_SNP [dm6]	A	C	4.042e^-4	0.841	INTRON numb	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
X	11409493	X_11409493_SNP [dm3] X_11515460_SNP [dm6]	A	T	4.057e^-4	0.841	INTRON Drak	TF binding site mE1_TFBS_Kr
2L	14031895	2L_14031895_SNP [dm3] 2L_14031895_SNP [dm6]	T	C	4.068e^-4	0.841	UPSTREAM CG18095 DOWNSTREAM CR45284 INTERGENIC
X	9601268	X_9601268_SNP [dm3] X_9707235_SNP [dm6]	T	A	4.081e^-4	0.841	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	5884838	3L_5884838_SNP [dm3] 3L_5891738_SNP [dm6]	C	A	4.083e^-4	0.841	INTERGENIC
3L	712423	3L_712423_SNP [dm3] 3L_712423_SNP [dm6]	G	C	4.086e^-4	0.841	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	16965216	2R_16965216_SNP [dm3] 2R_21077711_SNP [dm6]	A	C	4.086e^-4	0.841	INTRON Treh
2L	5557581	2L_5557581_SNP [dm3] 2L_5557581_SNP [dm6]	A	G	4.094e^-4	0.841	SPLICE_SITE_REGION GluRIIA SYNONYMOUS_CODING GluRIIA
3L	13887805	3L_13887805_SNP [dm3] 3L_13894705_SNP [dm6]	C	T	4.098e^-4	0.841	INTRON dysc
2L	9501642	2L_9501642_SNP [dm3] 2L_9501642_SNP [dm6]	G	C	4.110e^-4	0.841	INTRON CG33298
3R	26480660	3R_26480660_SNP [dm3] 3R_30654938_SNP [dm6]	C	T	4.114e^-4	0.841	INTERGENIC
X	14805567	X_14805567_SNP [dm3] X_14911534_SNP [dm6]	T	C	4.114e^-4	0.841	UPSTREAM CG14406 DOWNSTREAM CG12398 INTRON Flo2
2R	3972438	2R_3972438_DEL [dm3] 2R_8084933_DEL [dm6]	TGTATAAA	T	4.118e^-4	0.841	INTRON sut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16008929	2L_16008929_SNP [dm3] 2L_16008929_SNP [dm6]	C	T	4.139e^-4	0.841	INTRON beat-Ic	TF binding site mE1_TFBS_HSA
3R	17348414	3R_17348414_SNP [dm3] 3R_21522692_SNP [dm6]	C	T	4.144e^-4	0.841	INTRON CG7956
3L	18688290	3L_18688290_SNP [dm3] 3L_18695190_SNP [dm6]	C	G	4.144e^-4	0.841	INTRON CG6893
X	11409369	X_11409369_SNP [dm3] X_11515336_SNP [dm6]	T	G	4.145e^-4	0.841	INTRON Drak	TF binding site mE1_TFBS_Kr
X	22330264	X_22330264_SNP [dm3] X_22928428_SNP [dm6]	G	T	4.154e^-4	0.841	INTERGENIC
2R	11683256	2R_11683256_SNP [dm3] 2R_15795751_SNP [dm6]	C	T	4.166e^-4	0.841	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	5892862	3L_5892862_SNP [dm3] 3L_5899762_SNP [dm6]	C	T	4.171e^-4	0.841	DOWNSTREAM CG5592 INTRON CG32409	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	18202542	3L_18202542_SNP [dm3] 3L_18209442_SNP [dm6]	A	T	4.171e^-4	0.841	INTERGENIC
X	14121064	X_14121064_SNP [dm3] X_14227031_SNP [dm6]	G	A	4.172e^-4	0.841	SYNONYMOUS_CODING mRpL38	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12821148	2R_12821148_SNP [dm3] 2R_16933643_SNP [dm6]	C	T	4.177e^-4	0.841	INTRON Pkc53E	TF binding site BDTNP1_TFBS_twi
2L	14788353	2L_14788353_SNP [dm3] 2L_14788353_SNP [dm6]	C	A	4.183e^-4	0.841	INTERGENIC
X	5001836	X_5001836_SNP [dm3] X_5107803_SNP [dm6]	A	G	4.188e^-4	0.841	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	14932967	3R_14932967_SNP [dm3] 3R_19107245_SNP [dm6]	T	C	4.192e^-4	0.841	INTRON CG6040
3L	5639635	3L_5639635_SNP [dm3] 3L_5646535_SNP [dm6]	C	A	4.192e^-4	0.841	SYNONYMOUS_CODING Blimp-1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4026366	3L_4026366_DEL [dm3] 3L_4026366_DEL [dm6]	ACTA	A	4.198e^-4	0.841	UPSTREAM Gr64a & 1 other INTERGENIC
X	12798505	X_12798505_SNP [dm3] X_12904472_SNP [dm6]	C	T	4.202e^-4	0.841	SYNONYMOUS_CODING CG4404 UPSTREAM CG4407	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12392713	2R_12392713_SNP [dm3] 2R_16505208_SNP [dm6]	G	A	4.203e^-4	0.841	INTRON Sema-2a
2L	10672200	2L_10672200_SNP [dm3] 2L_10672200_SNP [dm6]	T	A	4.211e^-4	0.841	DOWNSTREAM CG31871 INTERGENIC
2R	19024800	2R_19024800_SNP [dm3] 2R_23137277_SNP [dm6]	G	A	4.218e^-4	0.841	INTERGENIC
2R	11338512	2R_11338512_SNP [dm3] 2R_15451007_SNP [dm6]	G	T	4.219e^-4	0.841	INTRON CG43729	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21405169	3R_21405169_SNP [dm3] 3R_25579447_SNP [dm6]	C	T	4.220e^-4	0.841	INTRON msi
2L	14270848	2L_14270848_SNP [dm3] 2L_14270848_SNP [dm6]	G	C	4.227e^-4	0.841	INTRON wb
3L	2655053	3L_2655053_SNP [dm3] 3L_2655053_SNP [dm6]	G	C	4.230e^-4	0.841	NON_SYNONYMOUS_CODING CG42304 UTR_3_PRIME Snup DOWNSTREAM Fife
2L	15090517	2L_15090517_SNP [dm3] 2L_15090517_SNP [dm6]	A	G	4.231e^-4	0.841	INTRON CG15270
2R	11128680	2R_11128680_INS [dm3] 2R_15241175_INS [dm6]	T	TAAGCT	4.231e^-4	0.841	INTRON Fs
X	12355297	X_12355297_SNP [dm3] X_12461264_SNP [dm6]	C	A	4.233e^-4	0.841	INTRON Rab40
2R	15891156	2R_15891156_SNP [dm3] 2R_20003651_SNP [dm6]	T	C	4.235e^-4	0.841	UTR_3_PRIME CG16898
2L	1862418	2L_1862418_SNP [dm3] 2L_1862418_SNP [dm6]	G	A	4.240e^-4	0.841	INTRON CG31663
2R	6929352	2R_6929352_SNP [dm3] 2R_11041847_SNP [dm6]	A	T	4.243e^-4	0.841	INTRON luna	TF binding site mE1_TFBS_cad
X	4191002	X_4191002_SNP [dm3] X_4296969_SNP [dm6]	G	C	4.246e^-4	0.841	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2650069	3L_2650069_SNP [dm3] 3L_2650069_SNP [dm6]	C	T	4.250e^-4	0.841	SYNONYMOUS_CODING CG1246 DOWNSTREAM Aats-pro	TF binding site mE1_TFBS_HSA
3L	411991	3L_411991_SNP [dm3] 3L_411991_SNP [dm6]	A	T	4.257e^-4	0.841	INTERGENIC
2R	18175454	2R_18175454_INS [dm3] 2R_22287949_INS [dm6]	T	TT	4.264e^-4	0.841	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	4928467	X_4928467_SNP [dm3] X_5034434_SNP [dm6]	T	A	4.264e^-4	0.841	INTRON CR44833
3L	12439132	3L_12439132_DEL [dm3] 3L_12446032_DEL [dm6]	TT	T	4.269e^-4	0.841	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8536481	2R_8536481_SNP [dm3] 2R_12648976_SNP [dm6]	T	A	4.273e^-4	0.841	UPSTREAM CG8785 INTERGENIC
3R	12082718	3R_12082718_SNP [dm3] 3R_16256996_SNP [dm6]	C	T	4.275e^-4	0.841	SYNONYMOUS_CODING tara	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6508912	2L_6508912_SNP [dm3] 2L_6508912_SNP [dm6]	T	A	4.276e^-4	0.841	UPSTREAM CR44775 INTRON CG31637	TF binding site BDTNP1_TFBS_hb
X	14442539	X_14442539_SNP [dm3] X_14548506_SNP [dm6]	C	T	4.279e^-4	0.841	INTERGENIC
2L	1923516	2L_1923516_SNP [dm3] 2L_1923516_SNP [dm6]	T	C	4.304e^-4	0.841	INTRON CG7337	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2645866	3L_2645866_SNP [dm3] 3L_2645866_SNP [dm6]	A	G	4.323e^-4	0.841	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7047712	3L_7047712_SNP [dm3] 3L_7054612_SNP [dm6]	T	A	4.330e^-4	0.841	INTERGENIC
3R	16890216	3R_16890216_SNP [dm3] 3R_21064494_SNP [dm6]	C	T	4.331e^-4	0.841	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2R	11872600	2R_11872600_SNP [dm3] 2R_15985095_SNP [dm6]	C	A	4.337e^-4	0.841	SYNONYMOUS_CODING Strn-Mlck
2L	1867640	2L_1867640_SNP [dm3] 2L_1867640_SNP [dm6]	T	G	4.348e^-4	0.841	INTRON CG31663
3R	5121954	3R_5121954_SNP [dm3] 3R_9296232_SNP [dm6]	A	G	4.350e^-4	0.841	INTRON CG8861
2L	21055222	2L_21055222_SNP [dm3] 2L_21055222_SNP [dm6]	A	T	4.354e^-4	0.841	NON_SYNONYMOUS_CODING Itgbetanu	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	19873194	X_19873194_INS [dm3] X_19979161_INS [dm6]	T	TT	4.360e^-4	0.841	INTERGENIC
2L	21911919	2L_21911919_SNP [dm3] 2L_21911919_SNP [dm6]	T	A	4.362e^-4	0.841	INTERGENIC	transposable element FlyBase
3L	14067633	3L_14067633_SNP [dm3] 3L_14074533_SNP [dm6]	G	A	4.364e^-4	0.841	INTRON Pex1
3L	14067644	3L_14067644_SNP [dm3] 3L_14074544_SNP [dm6]	C	G	4.364e^-4	0.841	INTRON Pex1
2R	11530566	2R_11530566_SNP [dm3] 2R_15643061_SNP [dm6]	T	C	4.372e^-4	0.841	INTRON CG42524
2R	11409467	2R_11409467_SNP [dm3] 2R_15521962_SNP [dm6]	A	C	4.377e^-4	0.841	INTRON Khc-73
3L	1565411	3L_1565411_SNP [dm3] 3L_1565411_SNP [dm6]	C	T	4.379e^-4	0.841	START_GAINED CG12003 UTR_5_PRIME CG12003 INTRON CG7879	TF binding site mE1_TFBS_sens
3L	3660568	3L_3660568_SNP [dm3] 3L_3660568_SNP [dm6]	A	G	4.387e^-4	0.841	DOWNSTREAM CG43098 INTERGENIC
X	7618967	X_7618967_SNP [dm3] X_7724934_SNP [dm6]	T	C	4.388e^-4	0.841	SYNONYMOUS_CODING Hira
2L	16504341	2L_16504341_SNP [dm3] 2L_16504341_SNP [dm6]	A	G	4.407e^-4	0.841	INTRON Tpr2
3L	4768992	3L_4768992_SNP [dm3] 3L_4768992_SNP [dm6]	C	A	4.410e^-4	0.841	INTRON RhoGEF64C
X	8292927	X_8292927_SNP [dm3] X_8398894_SNP [dm6]	T	C	4.411e^-4	0.841	UPSTREAM CG10555 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9147166	2L_9147166_SNP [dm3] 2L_9147166_SNP [dm6]	C	A	4.411e^-4	0.841	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad
X	10620152	X_10620152_SNP [dm3] X_10726119_SNP [dm6]	A	C	4.412e^-4	0.841	INTRON CG32676
X	14154432	X_14154432_SNP [dm3] X_14260399_SNP [dm6]	A	T	4.414e^-4	0.841	UPSTREAM CG1461 INTERGENIC
X	7064106	X_7064106_SNP [dm3] X_7170073_SNP [dm6]	A	T	4.417e^-4	0.841	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
X	5925978	X_5925978_SNP [dm3] X_6031945_SNP [dm6]	T	A	4.426e^-4	0.841	INTERGENIC	silencer mE1_HDAC_PRE
3R	7065522	3R_7065522_INS [dm3] 3R_11239800_INS [dm6]	T	TAT	4.426e^-4	0.841	DOWNSTREAM scpr-B INTRON CG31388	TF binding site BDTNP1_TFBS_twi
3R	7065524	3R_7065524_MNP [dm3] 3R_11239802_MNP [dm6]	AATAT	CTGCA	4.426e^-4	0.841	DOWNSTREAM scpr-B INTRON CG31388	TF binding site BDTNP1_TFBS_twi
3R	27860036	3R_27860036_DEL [dm3] 3R_32034314_DEL [dm6]	TTGGAGCTGCAAAAAATGAC...	T	4.430e^-4	0.841	INTERGENIC
3R	3469607	3R_3469607_SNP [dm3] 3R_7643885_SNP [dm6]	C	T	4.432e^-4	0.841	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	21483082	3L_21483082_SNP [dm3] 3L_21489982_SNP [dm6]	T	G	4.434e^-4	0.841	NON_SYNONYMOUS_CODING Neu2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9444160	2L_9444160_SNP [dm3] 2L_9444160_SNP [dm6]	T	A	4.437e^-4	0.841	INTRON numb
3L	14813565	3L_14813565_SNP [dm3] 3L_14820465_SNP [dm6]	G	A	4.446e^-4	0.841	INTRON CG17839
X	14182626	X_14182626_SNP [dm3] X_14288593_SNP [dm6]	G	A	4.451e^-4	0.841	DOWNSTREAM Muc12Ea INTRON CG9400
2L	8447265	2L_8447265_SNP [dm3] 2L_8447265_SNP [dm6]	A	G	4.455e^-4	0.841	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	7439752	2R_7439752_DEL [dm3] 2R_11552247_DEL [dm6]	GTATG	G	4.460e^-4	0.841	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4534212	3L_4534212_SNP [dm3] 3L_4534212_SNP [dm6]	G	T	4.463e^-4	0.841	INTRON CG11353
3R	10272634	3R_10272634_SNP [dm3] 3R_14446912_SNP [dm6]	T	C	4.463e^-4	0.841	INTRON cv-c
3L	14387788	3L_14387788_SNP [dm3] 3L_14394688_SNP [dm6]	T	C	4.464e^-4	0.841	INTERGENIC
3R	24382496	3R_24382496_SNP [dm3] 3R_28556774_SNP [dm6]	C	G	4.471e^-4	0.841	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16890117	3R_16890117_DEL [dm3] 3R_21064395_DEL [dm6]	TAA	T	4.472e^-4	0.841	UTR_5_PRIME Cortactin UPSTREAM AnxB9 INTRON Cortactin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
X	6115714	X_6115714_SNP [dm3] X_6221681_SNP [dm6]	C	T	4.472e^-4	0.841	SYNONYMOUS_CODING Efr	TF binding site mE1_TFBS_sens
2L	18908808	2L_18908808_SNP [dm3] 2L_18908808_SNP [dm6]	G	T	4.476e^-4	0.841	INTERGENIC
2R	11855480	2R_11855480_SNP [dm3] 2R_15967975_SNP [dm6]	G	T	4.477e^-4	0.841	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
X	20262315	X_20262315_DEL [dm3] X_20391288_DEL [dm6]	TGATGTTTCTTAT...	T	4.488e^-4	0.841	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9536658	X_9536658_SNP [dm3] X_9642625_SNP [dm6]	T	A	4.489e^-4	0.841	INTRON l_1_G0232	TF binding site mE1_TFBS_inv
3R	13360539	3R_13360539_SNP [dm3] 3R_17534817_SNP [dm6]	G	A	4.491e^-4	0.841	UTR_5_PRIME P5cr-2 UPSTREAM P5cr-2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	17965177	3L_17965177_SNP [dm3] 3L_17972077_SNP [dm6]	T	G	4.496e^-4	0.841	UPSTREAM Eip75B INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_Trl
X	7617605	X_7617605_SNP [dm3] X_7723572_SNP [dm6]	A	T	4.498e^-4	0.841	NON_SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens

By genomic position
Variant impact
Gene name

Wing_L3_Vein_Length phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results