DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.020e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.01905
In_3R_K	0.07739
In_3R_Mo	0.04432

Kruskal-Wallis test

Covariate	χ²	p-value
In_2L_t	7.7517	0.0207
In_3R_K	4.6195	0.0993
In_3R_Mo	6.811	0.0332

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2194 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	13570329	3R_13570329_SNP [dm3] 3R_17744607_SNP [dm6]	A	C	1.711e^-7	0.321	INTRON TyrRII	TF binding site mE1_TFBS_cad
2R	13415564	2R_13415564_SNP [dm3] 2R_17528059_SNP [dm6]	G	A	8.114e^-7	0.429	SYNONYMOUS_CODING Patronin
3L	412023	3L_412023_SNP [dm3] 3L_412023_SNP [dm6]	G	T	9.549e^-7	0.429	INTERGENIC
2L	17387254	2L_17387254_SNP [dm3] 2L_17387254_SNP [dm6]	T	C	1.099e^-6	0.429	INTRON CLIP-190
2R	13415561	2R_13415561_SNP [dm3] 2R_17528056_SNP [dm6]	A	G	1.144e^-6	0.429	SYNONYMOUS_CODING Patronin
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	1.883e^-6	0.588	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12116819	2R_12116819_SNP [dm3] 2R_16229314_SNP [dm6]	A	G	2.647e^-6	0.624	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19244843	2L_19244843_SNP [dm3] 2L_19244843_SNP [dm6]	C	A	2.663e^-6	0.624	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	411991	3L_411991_SNP [dm3] 3L_411991_SNP [dm6]	A	T	4.886e^-6	0.741	INTERGENIC
3R	3469607	3R_3469607_SNP [dm3] 3R_7643885_SNP [dm6]	C	T	5.938e^-6	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1010439	3L_1010439_SNP [dm3] 3L_1010439_SNP [dm6]	A	G	6.339e^-6	0.741	INTRON trio
X	20262267	X_20262267_SNP [dm3] X_20391240_SNP [dm6]	A	G	7.645e^-6	0.741	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19233529	2L_19233529_SNP [dm3] 2L_19233529_SNP [dm6]	A	G	8.152e^-6	0.741	INTERGENIC
3L	412168	3L_412168_SNP [dm3] 3L_412168_SNP [dm6]	G	A	8.816e^-6	0.741	INTERGENIC
3L	12159601	3L_12159601_SNP [dm3] 3L_12166501_SNP [dm6]	T	C	9.099e^-6	0.741	SYNONYMOUS_CODING Rh7	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18908808	2L_18908808_SNP [dm3] 2L_18908808_SNP [dm6]	G	T	1.091e^-5	0.741	INTERGENIC
3R	13570318	3R_13570318_SNP [dm3] 3R_17744596_SNP [dm6]	C	A	1.157e^-5	0.741	INTRON TyrRII	TF binding site mE1_TFBS_cad
3L	2645866	3L_2645866_SNP [dm3] 3L_2645866_SNP [dm6]	A	G	1.178e^-5	0.741	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3022256	3L_3022256_SNP [dm3] 3L_3022256_SNP [dm6]	G	A	1.220e^-5	0.741	INTERGENIC
2L	16957224	2L_16957224_SNP [dm3] 2L_16957224_SNP [dm6]	A	G	1.253e^-5	0.741	INTERGENIC
3R	8390929	3R_8390929_SNP [dm3] 3R_12565207_SNP [dm6]	T	C	1.336e^-5	0.741	INTRON Octbeta2R
3R	13139061	3R_13139061_SNP [dm3] 3R_17313339_SNP [dm6]	G	T	1.353e^-5	0.741	INTERGENIC
2R	13506075	2R_13506075_SNP [dm3] 2R_17618570_SNP [dm6]	T	G	1.372e^-5	0.741	UPSTREAM CG44403 INTRON CG10936
3L	12899010	3L_12899010_SNP [dm3] 3L_12905910_SNP [dm6]	T	A	1.405e^-5	0.741	INTERGENIC
3R	13570405	3R_13570405_SNP [dm3] 3R_17744683_SNP [dm6]	A	C	1.539e^-5	0.741	INTRON TyrRII
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	1.561e^-5	0.741	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3090995	3L_3090995_SNP [dm3] 3L_3090995_SNP [dm6]	C	T	1.618e^-5	0.741	UTR_3_PRIME Cht7 DOWNSTREAM CG11486 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	13570372	3R_13570372_SNP [dm3] 3R_17744650_SNP [dm6]	C	A	1.677e^-5	0.741	INTRON TyrRII	TF binding site mE1_TFBS_cad
3L	9694478	3L_9694478_SNP [dm3] 3L_9701378_SNP [dm6]	A	G	1.714e^-5	0.741	DOWNSTREAM UbcD4 INTRON CG6761	TF binding site mE1_TFBS_cad
3L	3966395	3L_3966395_SNP [dm3] 3L_3966395_SNP [dm6]	C	T	1.759e^-5	0.741	INTERGENIC
3R	8274107	3R_8274107_SNP [dm3] 3R_12448385_SNP [dm6]	G	A	1.765e^-5	0.741	NON_SYNONYMOUS_CODING CG5538 UPSTREAM CG18549 DOWNSTREAM Desat1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12287328	3L_12287328_SNP [dm3] 3L_12294228_SNP [dm6]	A	T	1.839e^-5	0.741	INTRON CG4328
2L	17385513	2L_17385513_SNP [dm3] 2L_17385513_SNP [dm6]	C	A	1.886e^-5	0.741	UPSTREAM CLIP-190 INTRON CLIP-190	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Ubx
3L	10293470	3L_10293470_SNP [dm3] 3L_10300370_SNP [dm6]	A	C	1.903e^-5	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	15154147	3R_15154147_SNP [dm3] 3R_19328425_SNP [dm6]	T	C	1.905e^-5	0.741	UPSTREAM CR44175 INTERGENIC
3R	13600672	3R_13600672_SNP [dm3] 3R_17774950_SNP [dm6]	C	T	1.912e^-5	0.741	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14813948	3L_14813948_SNP [dm3] 3L_14820848_SNP [dm6]	G	A	1.932e^-5	0.741	INTRON CG17839
3L	12287350	3L_12287350_SNP [dm3] 3L_12294250_SNP [dm6]	T	G	1.975e^-5	0.741	INTRON CG4328
3L	19516540	3L_19516540_SNP [dm3] 3L_19523440_SNP [dm6]	G	A	2.030e^-5	0.741	INTRON Cpr76Bc
2L	9463855	2L_9463855_SNP [dm3] 2L_9463855_SNP [dm6]	C	T	2.136e^-5	0.741	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_kn
3R	3156248	3R_3156248_SNP [dm3] 3R_7330526_SNP [dm6]	A	T	2.137e^-5	0.741	UPSTREAM CR44337 INTERGENIC
3L	15483312	3L_15483312_SNP [dm3] 3L_15490212_SNP [dm6]	A	G	2.156e^-5	0.741	INTERGENIC
X	20262270	X_20262270_INS [dm3] X_20391243_INS [dm6]	A	ATCAATAATAATTCAA...	2.169e^-5	0.741	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8404903	X_8404903_DEL [dm3] X_8510870_DEL [dm6]	ATTA	A	2.204e^-5	0.741	INTRON CG33181	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9661317	3L_9661317_SNP [dm3] 3L_9668217_SNP [dm6]	A	G	2.239e^-5	0.741	INTRON fry	TF binding site mE1_TFBS_cad
3L	1073058	3L_1073058_SNP [dm3] 3L_1073058_SNP [dm6]	G	A	2.245e^-5	0.741	INTRON bab1
3L	1109916	3L_1109916_SNP [dm3] 3L_1109916_SNP [dm6]	C	T	2.304e^-5	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	13549841	3L_13549841_SNP [dm3] 3L_13556741_SNP [dm6]	A	G	2.444e^-5	0.741	INTRON bru-3
2R	10998491	2R_10998491_SNP [dm3] 2R_15110986_SNP [dm6]	A	G	2.451e^-5	0.741	INTERGENIC
2R	8137681	2R_8137681_SNP [dm3] 2R_12250176_SNP [dm6]	A	C	2.475e^-5	0.741	INTERGENIC
2R	16919631	2R_16919631_SNP [dm3] 2R_21032126_SNP [dm6]	G	A	2.508e^-5	0.741	INTERGENIC
X	20262315	X_20262315_DEL [dm3] X_20391288_DEL [dm6]	TGATGTTTCTTAT...	T	2.541e^-5	0.741	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19894337	2R_19894337_SNP [dm3] 2R_24006814_SNP [dm6]	A	G	2.562e^-5	0.741	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10998493	2R_10998493_SNP [dm3] 2R_15110988_SNP [dm6]	A	G	2.610e^-5	0.741	INTERGENIC
X	17503877	X_17503877_SNP [dm3] X_17609844_SNP [dm6]	G	T	2.632e^-5	0.741	INTERGENIC
2R	16919632	2R_16919632_SNP [dm3] 2R_21032127_SNP [dm6]	G	A	2.652e^-5	0.741	INTERGENIC
2R	10998501	2R_10998501_SNP [dm3] 2R_15110996_SNP [dm6]	T	G	2.754e^-5	0.741	INTERGENIC
2R	8137710	2R_8137710_SNP [dm3] 2R_12250205_SNP [dm6]	C	A	2.856e^-5	0.741	INTERGENIC
3L	4843341	3L_4843341_SNP [dm3] 3L_4843341_SNP [dm6]	A	C	2.876e^-5	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	3096845	3L_3096845_SNP [dm3] 3L_3096845_SNP [dm6]	T	A	2.909e^-5	0.741	UPSTREAM tRNA:CR32286 DOWNSTREAM tRNA:CR32272 & 3 others INTRON Cht7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	16896011	3L_16896011_SNP [dm3] 3L_16902911_SNP [dm6]	A	T	2.961e^-5	0.741	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo
3L	3096809	3L_3096809_SNP [dm3] 3L_3096809_SNP [dm6]	A	T	2.988e^-5	0.741	UPSTREAM tRNA:CR32286 DOWNSTREAM tRNA:CR32272 & 3 others INTRON Cht7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	12264143	X_12264143_SNP [dm3] X_12370110_SNP [dm6]	C	A	3.013e^-5	0.741	INTERGENIC
2L	16239804	2L_16239804_SNP [dm3] 2L_16239804_SNP [dm6]	C	T	3.033e^-5	0.741	INTRON CG42817
3L	3096833	3L_3096833_SNP [dm3] 3L_3096833_SNP [dm6]	C	T	3.041e^-5	0.741	UPSTREAM tRNA:CR32286 DOWNSTREAM tRNA:CR32272 & 3 others INTRON Cht7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3096781	3L_3096781_SNP [dm3] 3L_3096781_SNP [dm6]	G	C	3.063e^-5	0.741	UPSTREAM tRNA:CR32286 DOWNSTREAM tRNA:CR32288 & 4 others INTRON Cht7	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	15154149	3R_15154149_SNP [dm3] 3R_19328427_SNP [dm6]	A	T	3.081e^-5	0.741	UPSTREAM CR44175 INTERGENIC
3L	3096703	3L_3096703_INS [dm3] 3L_3096703_INS [dm6]	T	TA	3.132e^-5	0.741	UPSTREAM tRNA:CR32286 DOWNSTREAM tRNA:CR32288 & 4 others INTRON Cht7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3096737	3L_3096737_SNP [dm3] 3L_3096737_SNP [dm6]	T	G	3.132e^-5	0.741	UPSTREAM tRNA:CR32286 DOWNSTREAM tRNA:CR32288 & 4 others INTRON Cht7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3096887	3L_3096887_SNP [dm3] 3L_3096887_SNP [dm6]	T	A	3.132e^-5	0.741	UPSTREAM tRNA:CR32286 DOWNSTREAM tRNA:CR32272 & 3 others INTRON Cht7	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3096991	3L_3096991_SNP [dm3] 3L_3096991_SNP [dm6]	G	C	3.132e^-5	0.741	UPSTREAM tRNA:CR32286 & 1 other DOWNSTREAM tRNA:CR32289 & 2 others INTRON Cht7	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3097190	3L_3097190_SNP [dm3] 3L_3097190_SNP [dm6]	G	A	3.132e^-5	0.741	UPSTREAM tRNA:CR32286 & 1 other DOWNSTREAM tRNA:CR32287 & 1 other INTRON Cht7	TF binding site mE1_TFBS_HSA
3L	3097195	3L_3097195_SNP [dm3] 3L_3097195_SNP [dm6]	G	A	3.132e^-5	0.741	UPSTREAM tRNA:CR32286 & 1 other DOWNSTREAM tRNA:CR32287 & 1 other INTRON Cht7	TF binding site mE1_TFBS_HSA
3L	3097298	3L_3097298_SNP [dm3] 3L_3097298_SNP [dm6]	A	T	3.132e^-5	0.741	UPSTREAM tRNA:CR32286 & 1 other DOWNSTREAM tRNA:CR32287 & 1 other INTRON Cht7	TF binding site mE1_TFBS_HSA
3L	3096734	3L_3096734_SNP [dm3] 3L_3096734_SNP [dm6]	T	A	3.163e^-5	0.741	UPSTREAM tRNA:CR32286 DOWNSTREAM tRNA:CR32288 & 4 others INTRON Cht7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	17696524	2R_17696524_SNP [dm3] 2R_21809019_SNP [dm6]	T	C	3.188e^-5	0.741	INTERGENIC
2L	19233514	2L_19233514_SNP [dm3] 2L_19233514_SNP [dm6]	A	G	3.207e^-5	0.741	INTERGENIC
2L	18910570	2L_18910570_SNP [dm3] 2L_18910570_SNP [dm6]	C	T	3.296e^-5	0.741	INTERGENIC
3L	3095934	3L_3095934_SNP [dm3] 3L_3095934_SNP [dm6]	G	A	3.319e^-5	0.741	UPSTREAM tRNA:CR32289 & 2 others DOWNSTREAM tRNA:CR32288 & 1 other INTRON Cht7	TF binding site BDTNP1_TFBS_dl
2L	17385424	2L_17385424_SNP [dm3] 2L_17385424_SNP [dm6]	A	C	3.366e^-5	0.741	UTR_5_PRIME CLIP-190 UPSTREAM CLIP-190 INTRON CLIP-190	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	11791042	3L_11791042_SNP [dm3] 3L_11797942_SNP [dm6]	A	G	3.374e^-5	0.741	SYNONYMOUS_CODING Klp68D	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19007092	2R_19007092_SNP [dm3] 2R_23119569_SNP [dm6]	G	T	3.390e^-5	0.741	INTERGENIC
2R	12821148	2R_12821148_SNP [dm3] 2R_16933643_SNP [dm6]	C	T	3.415e^-5	0.741	INTRON Pkc53E	TF binding site BDTNP1_TFBS_twi
2L	12676926	2L_12676926_DEL [dm3] 2L_12676926_DEL [dm6]	TAAACGCACATAAATT...	T	3.434e^-5	0.741	INTRON pdm2	TF binding site BDTNP1_TFBS_dl
3R	7119665	3R_7119665_SNP [dm3] 3R_11293943_SNP [dm6]	G	C	3.549e^-5	0.741	INTRON CR31386
3L	3095963	3L_3095963_SNP [dm3] 3L_3095963_SNP [dm6]	A	G	3.554e^-5	0.741	UPSTREAM tRNA:CR32289 & 2 others DOWNSTREAM tRNA:CR32288 & 1 other INTRON Cht7	TF binding site BDTNP1_TFBS_dl
3R	13139524	3R_13139524_SNP [dm3] 3R_17313802_SNP [dm6]	G	T	3.561e^-5	0.741	INTERGENIC
3L	3096745	3L_3096745_SNP [dm3] 3L_3096745_SNP [dm6]	T	A	3.574e^-5	0.741	UPSTREAM tRNA:CR32286 DOWNSTREAM tRNA:CR32288 & 4 others INTRON Cht7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	22020494	2L_22020494_SNP [dm3] 2L_22020494_SNP [dm6]	A	G	3.643e^-5	0.741	DOWNSTREAM CR33987 INTRON tio	TF binding site mE1_TFBS_Trl
2R	18769488	2R_18769488_SNP [dm3] 2R_22881965_SNP [dm6]	G	A	3.680e^-5	0.741	DOWNSTREAM PIP5K59B & 1 other INTRON CG3501	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16957974	2L_16957974_SNP [dm3] 2L_16957974_SNP [dm6]	G	T	3.692e^-5	0.741	INTERGENIC
3L	3097227	3L_3097227_SNP [dm3] 3L_3097227_SNP [dm6]	C	T	3.711e^-5	0.741	UPSTREAM tRNA:CR32286 & 1 other DOWNSTREAM tRNA:CR32287 & 1 other INTRON Cht7	TF binding site mE1_TFBS_HSA
3L	3096717	3L_3096717_SNP [dm3] 3L_3096717_SNP [dm6]	A	T	3.765e^-5	0.741	UPSTREAM tRNA:CR32286 DOWNSTREAM tRNA:CR32288 & 4 others INTRON Cht7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	13310290	3L_13310290_SNP [dm3] 3L_13317190_SNP [dm6]	T	G	3.811e^-5	0.741	INTERGENIC
3L	9661340	3L_9661340_SNP [dm3] 3L_9668240_SNP [dm6]	C	G	3.845e^-5	0.741	INTRON fry	TF binding site mE1_TFBS_cad
3L	11168325	3L_11168325_SNP [dm3] 3L_11175225_SNP [dm6]	T	A	4.083e^-5	0.741	INTRON CG14142
3L	11168332	3L_11168332_SNP [dm3] 3L_11175232_SNP [dm6]	A	T	4.083e^-5	0.741	INTRON CG14142
2R	11576437	2R_11576437_SNP [dm3] 2R_15688932_SNP [dm6]	T	C	4.122e^-5	0.741	NON_SYNONYMOUS_CODING Cep89 UPSTREAM CG30090	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	21900436	3R_21900436_SNP [dm3] 3R_26074714_SNP [dm6]	A	G	4.225e^-5	0.741	INTERGENIC
X	9508220	X_9508220_DEL [dm3] X_9614187_DEL [dm6]	CGATCTTGGGGC...	C	4.244e^-5	0.741	INTRON CG42797
3L	11168356	3L_11168356_INS [dm3] 3L_11175256_INS [dm6]	G	TTATA	4.298e^-5	0.741	INTRON CG14142	TF binding site mE1_TFBS_cad
3L	11168354	3L_11168354_SNP [dm3] 3L_11175254_SNP [dm6]	G	A	4.331e^-5	0.741	INTRON CG14142	TF binding site mE1_TFBS_cad
3L	7156753	3L_7156753_SNP [dm3] 3L_7163653_SNP [dm6]	G	A	4.350e^-5	0.741	INTRON Dscam2
3L	7156769	3L_7156769_SNP [dm3] 3L_7163669_SNP [dm6]	G	A	4.350e^-5	0.741	INTRON Dscam2
2L	13040052	2L_13040052_SNP [dm3] 2L_13040052_SNP [dm6]	G	C	4.375e^-5	0.741	INTRON CG9932
2L	9463889	2L_9463889_DEL [dm3] 2L_9463889_DEL [dm6]	CA	G	4.381e^-5	0.741	UTR_3_PRIME numb DOWNSTREAM numb
3L	14815465	3L_14815465_SNP [dm3] 3L_14822365_SNP [dm6]	G	A	4.408e^-5	0.741	INTRON CG17839
3L	8547757	3L_8547757_SNP [dm3] 3L_8554657_SNP [dm6]	A	T	4.469e^-5	0.741	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	378373	2L_378373_SNP [dm3] 2L_378373_SNP [dm6]	A	T	4.469e^-5	0.741	UTR_5_PRIME al	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3R	13600157	3R_13600157_SNP [dm3] 3R_17774435_SNP [dm6]	T	G	4.571e^-5	0.741	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3L	3095899	3L_3095899_SNP [dm3] 3L_3095899_SNP [dm6]	A	T	4.610e^-5	0.741	UPSTREAM tRNA:CR32289 & 2 others DOWNSTREAM tRNA:CR32288 & 1 other INTRON Cht7	TF binding site BDTNP1_TFBS_dl
3L	3095912	3L_3095912_SNP [dm3] 3L_3095912_SNP [dm6]	G	T	4.610e^-5	0.741	UPSTREAM tRNA:CR32289 & 2 others DOWNSTREAM tRNA:CR32288 & 1 other INTRON Cht7	TF binding site BDTNP1_TFBS_dl
3L	3095977	3L_3095977_SNP [dm3] 3L_3095977_SNP [dm6]	A	T	4.610e^-5	0.741	UPSTREAM tRNA:CR32289 & 2 others DOWNSTREAM tRNA:CR32288 & 1 other INTRON Cht7	TF binding site BDTNP1_TFBS_dl
X	1196886	X_1196886_SNP [dm3] X_1302853_SNP [dm6]	T	C	4.619e^-5	0.741	INTRON DAAM	TF binding site mE1_TFBS_chinmo
2L	19236590	2L_19236590_SNP [dm3] 2L_19236590_SNP [dm6]	G	A	4.625e^-5	0.741	INTERGENIC
3L	14410434	3L_14410434_SNP [dm3] 3L_14417334_SNP [dm6]	G	A	4.686e^-5	0.741	INTRON bbg
2L	19250478	2L_19250478_SNP [dm3] 2L_19250478_SNP [dm6]	C	T	4.722e^-5	0.741	INTERGENIC
2L	12676943	2L_12676943_SNP [dm3] 2L_12676943_SNP [dm6]	A	T	4.793e^-5	0.741	INTRON pdm2	TF binding site BDTNP1_TFBS_dl
3L	7296139	3L_7296139_DEL [dm3] 3L_7303039_DEL [dm6]	AA	A	4.834e^-5	0.741	INTRON unc-13-4A
3R	14515011	3R_14515011_SNP [dm3] 3R_18689289_SNP [dm6]	G	A	4.859e^-5	0.741	NON_SYNONYMOUS_CODING Muc91C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16890386	3R_16890386_SNP [dm3] 3R_21064664_SNP [dm6]	A	G	4.866e^-5	0.741	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3R	15154191	3R_15154191_SNP [dm3] 3R_19328469_SNP [dm6]	T	A	4.867e^-5	0.741	UPSTREAM CR44175 INTERGENIC
3R	21900432	3R_21900432_SNP [dm3] 3R_26074710_SNP [dm6]	C	T	4.878e^-5	0.741	INTERGENIC
2R	12543724	2R_12543724_SNP [dm3] 2R_16656219_SNP [dm6]	G	A	4.906e^-5	0.741	SYNONYMOUS_CODING Picot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14561076	3L_14561076_SNP [dm3] 3L_14567976_SNP [dm6]	T	C	5.020e^-5	0.741	SYNONYMOUS_CODING CG42758
2R	15884106	2R_15884106_SNP [dm3] 2R_19996601_SNP [dm6]	G	C	5.025e^-5	0.741	INTERGENIC
2R	3077080	2R_3077080_INS [dm3] 2R_7189575_INS [dm6]	G	GGCAG	5.088e^-5	0.741	INTRON pk
2R	17119206	2R_17119206_SNP [dm3] 2R_21231701_SNP [dm6]	G	T	5.092e^-5	0.741	INTRON ASPP
2R	8937770	2R_8937770_SNP [dm3] 2R_13050265_SNP [dm6]	A	G	5.095e^-5	0.741	UPSTREAM CG13324 INTERGENIC
2L	2863927	2L_2863927_SNP [dm3] 2L_2863927_SNP [dm6]	C	T	5.172e^-5	0.746	INTRON CG2991	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11168350	3L_11168350_SNP [dm3] 3L_11175250_SNP [dm6]	C	T	5.292e^-5	0.757	INTRON CG14142	TF binding site mE1_TFBS_cad
3R	4331834	3R_4331834_SNP [dm3] 3R_8506112_SNP [dm6]	C	T	5.366e^-5	0.757	INTERGENIC	TF binding site mE1_TFBS_cad
2L	17315218	2L_17315218_SNP [dm3] 2L_17315218_SNP [dm6]	T	C	5.375e^-5	0.757	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3966428	3L_3966428_SNP [dm3] 3L_3966428_SNP [dm6]	C	A	5.414e^-5	0.757	INTERGENIC
3L	7467600	3L_7467600_SNP [dm3] 3L_7474500_SNP [dm6]	T	C	5.589e^-5	0.768	INTERGENIC
2L	17315237	2L_17315237_SNP [dm3] 2L_17315237_SNP [dm6]	A	T	5.756e^-5	0.768	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	7467081	3L_7467081_SNP [dm3] 3L_7473981_SNP [dm6]	A	G	5.850e^-5	0.768	INTERGENIC
3R	16706109	3R_16706109_SNP [dm3] 3R_20880387_SNP [dm6]	T	C	5.870e^-5	0.768	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
X	3136990	X_3136990_SNP [dm3] X_3242957_SNP [dm6]	A	G	5.885e^-5	0.768	UPSTREAM ng3 DOWNSTREAM ng1 & 1 other INTRON dnc
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	5.909e^-5	0.768	INTRON dnc
2L	19230546	2L_19230546_SNP [dm3] 2L_19230546_SNP [dm6]	C	G	5.989e^-5	0.768	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
X	16442154	X_16442154_SNP [dm3] X_16548121_SNP [dm6]	A	C	5.997e^-5	0.768	UPSTREAM CG9902 DOWNSTREAM Arp2 INTERGENIC	transposable element FlyBase
X	8156039	X_8156039_SNP [dm3] X_8262006_SNP [dm6]	A	T	6.115e^-5	0.768	INTRON CG1632
3R	3966032	3R_3966032_SNP [dm3] 3R_8140310_SNP [dm6]	G	A	6.139e^-5	0.768	UPSTREAM tRNA:N5:84F & 2 others DOWNSTREAM tRNA:R2:84Fc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	412160	3L_412160_INS [dm3] 3L_412160_INS [dm6]	A	AAATACACATA...	6.308e^-5	0.768	INTERGENIC
3L	15483333	3L_15483333_SNP [dm3] 3L_15490233_SNP [dm6]	T	C	6.324e^-5	0.768	INTERGENIC
2L	19233508	2L_19233508_SNP [dm3] 2L_19233508_SNP [dm6]	G	A	6.355e^-5	0.768	INTERGENIC
3R	5963561	3R_5963561_SNP [dm3] 3R_10137839_SNP [dm6]	T	C	6.434e^-5	0.768	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	3253101	3R_3253101_INS [dm3] 3R_7427379_INS [dm6]	T	TACGTTAAATTTAAT...	6.481e^-5	0.768	INTERGENIC
2L	16239657	2L_16239657_SNP [dm3] 2L_16239657_SNP [dm6]	C	T	6.500e^-5	0.768	INTRON CG42817
3L	11168307	3L_11168307_SNP [dm3] 3L_11175207_SNP [dm6]	T	A	6.524e^-5	0.768	INTRON CG14142
3L	18563584	3L_18563584_SNP [dm3] 3L_18570484_SNP [dm6]	A	G	6.559e^-5	0.768	INTRON AstC-R1
3L	12646436	3L_12646436_SNP [dm3] 3L_12653336_SNP [dm6]	A	T	6.612e^-5	0.768	UPSTREAM CR43431 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	19233521	2L_19233521_SNP [dm3] 2L_19233521_SNP [dm6]	C	T	6.615e^-5	0.768	INTERGENIC
3L	8556612	3L_8556612_SNP [dm3] 3L_8563512_SNP [dm6]	C	G	6.622e^-5	0.768	INTRON rhea
2R	10998512	2R_10998512_SNP [dm3] 2R_15111007_SNP [dm6]	G	T	6.652e^-5	0.768	INTERGENIC
3R	13600041	3R_13600041_SNP [dm3] 3R_17774319_SNP [dm6]	C	T	6.706e^-5	0.768	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3L	3095928	3L_3095928_SNP [dm3] 3L_3095928_SNP [dm6]	A	G	6.709e^-5	0.768	UPSTREAM tRNA:CR32289 & 2 others DOWNSTREAM tRNA:CR32288 & 1 other INTRON Cht7	TF binding site BDTNP1_TFBS_dl
3L	8207850	3L_8207850_SNP [dm3] 3L_8214750_SNP [dm6]	T	C	6.805e^-5	0.768	UPSTREAM CG8012 INTERGENIC
2L	21883243	2L_21883243_SNP [dm3] 2L_21883243_SNP [dm6]	A	T	6.817e^-5	0.768	INTERGENIC
2L	19230601	2L_19230601_SNP [dm3] 2L_19230601_SNP [dm6]	G	T	6.858e^-5	0.768	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2R	19024800	2R_19024800_SNP [dm3] 2R_23137277_SNP [dm6]	G	A	6.859e^-5	0.768	INTERGENIC
2L	12415089	2L_12415089_SNP [dm3] 2L_12415089_SNP [dm6]	G	A	6.866e^-5	0.768	INTRON vir-1
3R	8388326	3R_8388326_SNP [dm3] 3R_12562604_SNP [dm6]	C	T	6.910e^-5	0.768	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
X	1191522	X_1191522_SNP [dm3] X_1297489_SNP [dm6]	T	C	6.913e^-5	0.768	DOWNSTREAM CG32811 INTRON DAAM	TF binding site mE1_TFBS_chinmo
2R	10581745	2R_10581745_SNP [dm3] 2R_14694240_SNP [dm6]	A	G	6.973e^-5	0.768	INTRON mspo
X	12665748	X_12665748_SNP [dm3] X_12771715_SNP [dm6]	C	T	7.049e^-5	0.768	UTR_3_PRIME CG3812 DOWNSTREAM CG32647 & 1 other
3L	4152861	3L_4152861_SNP [dm3] 3L_4152861_SNP [dm6]	G	A	7.060e^-5	0.768	DOWNSTREAM CG1299 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4861710	3L_4861710_SNP [dm3] 3L_4861710_SNP [dm6]	C	A	7.135e^-5	0.768	INTRON CG17150
2L	17387283	2L_17387283_SNP [dm3] 2L_17387283_SNP [dm6]	T	A	7.138e^-5	0.768	INTRON CLIP-190
2L	12676983	2L_12676983_SNP [dm3] 2L_12676983_SNP [dm6]	T	A	7.231e^-5	0.768	INTRON pdm2	TF binding site BDTNP1_TFBS_dl
2L	18328109	2L_18328109_SNP [dm3] 2L_18328109_SNP [dm6]	C	G	7.262e^-5	0.768	INTRON Fas3
2R	3078631	2R_3078631_DEL [dm3] 2R_7191126_DEL [dm6]	TACT	T	7.293e^-5	0.768	INTRON pk	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
2L	16553993	2L_16553993_SNP [dm3] 2L_16553993_SNP [dm6]	G	C	7.295e^-5	0.768	INTRON CG42389
X	6652864	X_6652864_SNP [dm3] X_6758831_SNP [dm6]	T	G	7.299e^-5	0.768	UPSTREAM CG14438 INTRON CG14438 EXON CR43496	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_kn mE1_TFBS_sens
X	1718768	X_1718768_DEL [dm3] X_1824735_DEL [dm6]	CGATTC	C	7.332e^-5	0.768	UPSTREAM CG42666 INTRON CG42666	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	10786018	3R_10786018_SNP [dm3] 3R_14960296_SNP [dm6]	G	A	7.342e^-5	0.768	INTERGENIC
3L	12055410	3L_12055410_SNP [dm3] 3L_12062310_SNP [dm6]	C	T	7.352e^-5	0.768	INTRON rols	TF binding site BDTNP1_TFBS_da
X	21081580	X_21081580_SNP [dm3] X_21210553_SNP [dm6]	A	G	7.358e^-5	0.768	INTRON CG32521
2R	9421541	2R_9421541_SNP [dm3] 2R_13534036_SNP [dm6]	G	A	7.390e^-5	0.768	INTRON Vmat	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	4545922	3L_4545922_SNP [dm3] 3L_4545922_SNP [dm6]	G	A	7.414e^-5	0.768	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	15884102	2R_15884102_SNP [dm3] 2R_19996597_SNP [dm6]	T	G	7.515e^-5	0.77	INTERGENIC
2R	12037051	2R_12037051_SNP [dm3] 2R_16149546_SNP [dm6]	G	A	7.521e^-5	0.77	SYNONYMOUS_CODING CG10731 UPSTREAM Ext2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	9661315	3L_9661315_SNP [dm3] 3L_9668215_SNP [dm6]	A	G	7.584e^-5	0.773	INTRON fry	TF binding site mE1_TFBS_cad
2R	17550586	2R_17550586_INS [dm3] 2R_21663081_INS [dm6]	T	TATAT	7.727e^-5	0.783	UPSTREAM CR44748 & 1 other INTERGENIC
X	20377311	X_20377311_SNP [dm3] X_20506284_SNP [dm6]	C	T	7.779e^-5	0.784	INTRON RhoGAP19D
X	7110481	X_7110481_SNP [dm3] X_7216448_SNP [dm6]	T	C	8.066e^-5	0.786	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_twi
3R	11666483	3R_11666483_SNP [dm3] 3R_15840761_SNP [dm6]	G	C	8.074e^-5	0.786	SYNONYMOUS_CODING spn-E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9053262	2L_9053262_SNP [dm3] 2L_9053262_SNP [dm6]	T	A	8.114e^-5	0.786	INTRON CG31708
2R	17889189	2R_17889189_SNP [dm3] 2R_22001684_SNP [dm6]	C	G	8.120e^-5	0.786	INTRON CG34370
3L	14555445	3L_14555445_SNP [dm3] 3L_14562345_SNP [dm6]	A	T	8.162e^-5	0.786	INTRON CG34039	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
3L	16952764	3L_16952764_DEL [dm3] 3L_16959664_DEL [dm6]	TGACATGACAATAAAT...	T	8.193e^-5	0.786	INTRON Nc73EF
3R	2849733	3R_2849733_SNP [dm3] 3R_7024011_SNP [dm6]	G	T	8.257e^-5	0.786	INTERGENIC
3L	9694291	3L_9694291_SNP [dm3] 3L_9701191_SNP [dm6]	G	A	8.310e^-5	0.786	SYNONYMOUS_CODING CG6761 DOWNSTREAM UbcD4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17894354	2R_17894354_SNP [dm3] 2R_22006849_SNP [dm6]	A	G	8.334e^-5	0.786	INTRON CG34370
3R	21900446	3R_21900446_SNP [dm3] 3R_26074724_SNP [dm6]	G	T	8.336e^-5	0.786	INTERGENIC
2R	16407833	2R_16407833_SNP [dm3] 2R_20520328_SNP [dm6]	G	A	8.371e^-5	0.786	INTERGENIC
3L	15483419	3L_15483419_SNP [dm3] 3L_15490319_SNP [dm6]	T	A	8.384e^-5	0.786	INTERGENIC
2L	9011865	2L_9011865_SNP [dm3] 2L_9011865_SNP [dm6]	A	T	8.420e^-5	0.786	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
2L	18328716	2L_18328716_SNP [dm3] 2L_18328716_SNP [dm6]	T	C	8.492e^-5	0.786	INTRON Fas3
2L	13040021	2L_13040021_SNP [dm3] 2L_13040021_SNP [dm6]	A	G	8.495e^-5	0.786	INTRON CG9932
3R	2242183	3R_2242183_SNP [dm3] 3R_6416461_SNP [dm6]	G	C	8.497e^-5	0.786	INTRON gpp
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	8.516e^-5	0.786	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
2R	4956241	2R_4956241_SNP [dm3] 2R_9068736_SNP [dm6]	T	G	8.641e^-5	0.79	UPSTREAM ana INTRON ana
3L	7777439	3L_7777439_SNP [dm3] 3L_7784339_SNP [dm6]	C	T	8.659e^-5	0.79	INTRON CG32369
2R	8137678	2R_8137678_SNP [dm3] 2R_12250173_SNP [dm6]	T	C	8.677e^-5	0.79	INTERGENIC
2R	17887141	2R_17887141_SNP [dm3] 2R_21999636_SNP [dm6]	C	A	8.769e^-5	0.794	INTRON CG34370
3L	4840793	3L_4840793_SNP [dm3] 3L_4840793_SNP [dm6]	T	G	8.860e^-5	0.795	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	465002	3L_465002_SNP [dm3] 3L_465002_SNP [dm6]	A	G	8.865e^-5	0.795	INTRON klar
2R	13242737	2R_13242737_SNP [dm3] 2R_17355232_SNP [dm6]	C	T	8.969e^-5	0.798	INTRON mbl
3R	4930464	3R_4930464_DEL [dm3] 3R_9104742_DEL [dm6]	CC	C	8.996e^-5	0.798	INTRON pum
2R	12544562	2R_12544562_SNP [dm3] 2R_16657057_SNP [dm6]	G	A	9.241e^-5	0.798	SYNONYMOUS_CODING Picot	TF binding site mE1_TFBS_cad
3L	14057292	3L_14057292_SNP [dm3] 3L_14064192_SNP [dm6]	C	T	9.295e^-5	0.798	INTRON CG32138	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	13040085	2L_13040085_SNP [dm3] 2L_13040085_SNP [dm6]	T	C	9.354e^-5	0.798	INTRON CG9932
2L	19079217	2L_19079217_SNP [dm3] 2L_19079217_SNP [dm6]	A	T	9.378e^-5	0.798	UPSTREAM CG10700 DOWNSTREAM Lim3 INTERGENIC
2L	13735512	2L_13735512_SNP [dm3] 2L_13735512_SNP [dm6]	T	A	9.404e^-5	0.798	UPSTREAM CG31813 INTERGENIC
2R	16361612	2R_16361612_SNP [dm3] 2R_20474107_SNP [dm6]	A	G	9.432e^-5	0.798	INTRON CG12484
X	17127117	X_17127117_SNP [dm3] X_17233084_SNP [dm6]	A	T	9.446e^-5	0.798	UTR_5_PRIME f	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	1931534	2L_1931534_SNP [dm3] 2L_1931534_SNP [dm6]	A	G	9.489e^-5	0.798	INTRON CG7337
3L	3095893	3L_3095893_SNP [dm3] 3L_3095893_SNP [dm6]	G	A	9.597e^-5	0.798	UPSTREAM tRNA:CR32289 & 2 others DOWNSTREAM tRNA:CR32288 & 1 other INTRON Cht7	TF binding site BDTNP1_TFBS_dl
2R	13502624	2R_13502624_SNP [dm3] 2R_17615119_SNP [dm6]	G	A	9.650e^-5	0.798	SYNONYMOUS_CODING CG10936	TF binding site mE1_TFBS_inv
2L	13735525	2L_13735525_SNP [dm3] 2L_13735525_SNP [dm6]	A	C	9.692e^-5	0.798	UPSTREAM CG31813 INTERGENIC
X	17061765	X_17061765_SNP [dm3] X_17167732_SNP [dm6]	C	G	9.753e^-5	0.798	INTRON baz
X	17061777	X_17061777_SNP [dm3] X_17167744_SNP [dm6]	G	T	9.753e^-5	0.798	INTRON baz
X	17061793	X_17061793_SNP [dm3] X_17167760_SNP [dm6]	A	T	9.753e^-5	0.798	INTRON baz
X	17061814	X_17061814_DEL [dm3] X_17167781_DEL [dm6]	CAAGCTAAC	C	9.753e^-5	0.798	INTRON baz
2L	19908434	2L_19908434_SNP [dm3] 2L_19908434_SNP [dm6]	T	G	9.754e^-5	0.798	INTRON sick
3L	10702270	3L_10702270_SNP [dm3] 3L_10709170_SNP [dm6]	C	A	9.809e^-5	0.798	INTERGENIC
2L	18991671	2L_18991671_SNP [dm3] 2L_18991671_SNP [dm6]	G	C	9.937e^-5	0.798	NON_SYNONYMOUS_CODING CG15169	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	17125376	X_17125376_SNP [dm3] X_17231343_SNP [dm6]	C	A	9.988e^-5	0.798	UPSTREAM CG10597 INTERGENIC
X	16434149	X_16434149_SNP [dm3] X_16540116_SNP [dm6]	A	C	1.008e^-4	0.798	SYNONYMOUS_CODING CG9903	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19024797	2R_19024797_SNP [dm3] 2R_23137274_SNP [dm6]	C	T	1.012e^-4	0.798	INTERGENIC
3L	2645600	3L_2645600_SNP [dm3] 3L_2645600_SNP [dm6]	A	T	1.014e^-4	0.798	INTRON CG1143	TF binding site mE1_TFBS_cad
2L	18871891	2L_18871891_SNP [dm3] 2L_18871891_SNP [dm6]	A	G	1.014e^-4	0.798	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19008611	2R_19008611_SNP [dm3] 2R_23121088_SNP [dm6]	G	A	1.019e^-4	0.798	INTERGENIC
3L	11146537	3L_11146537_SNP [dm3] 3L_11153437_SNP [dm6]	G	T	1.027e^-4	0.798	INTRON CG32082
2L	5758264	2L_5758264_SNP [dm3] 2L_5758264_SNP [dm6]	A	C	1.035e^-4	0.798	INTRON CG11030	TF binding site mE1_TFBS_cad
2L	19079203	2L_19079203_SNP [dm3] 2L_19079203_SNP [dm6]	C	T	1.036e^-4	0.798	UPSTREAM CG10700 DOWNSTREAM Lim3 INTERGENIC
2R	3079481	2R_3079481_SNP [dm3] 2R_7191976_SNP [dm6]	T	G	1.037e^-4	0.798	INTRON pk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	1.058e^-4	0.798	EXON CR44950
3L	13549577	3L_13549577_SNP [dm3] 3L_13556477_SNP [dm6]	G	A	1.062e^-4	0.798	INTRON bru-3
3R	10651842	3R_10651842_SNP [dm3] 3R_14826120_SNP [dm6]	A	C	1.062e^-4	0.798	NON_SYNONYMOUS_CODING btsz
3R	3948645	3R_3948645_SNP [dm3] 3R_8122923_SNP [dm6]	C	T	1.063e^-4	0.798	NON_SYNONYMOUS_CODING CG7878 DOWNSTREAM puc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	18454882	X_18454882_SNP [dm3] X_18560849_SNP [dm6]	G	A	1.071e^-4	0.798	INTRON Bx
3L	12287351	3L_12287351_SNP [dm3] 3L_12294251_SNP [dm6]	G	T	1.076e^-4	0.798	INTRON CG4328
3R	10651442	3R_10651442_SNP [dm3] 3R_14825720_SNP [dm6]	T	C	1.079e^-4	0.798	SYNONYMOUS_CODING btsz
3L	12571356	3L_12571356_SNP [dm3] 3L_12578256_SNP [dm6]	C	T	1.087e^-4	0.798	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7700782	2L_7700782_SNP [dm3] 2L_7700782_SNP [dm6]	T	C	1.094e^-4	0.798	INTRON Tep2
3L	9689632	3L_9689632_INS [dm3] 3L_9696532_INS [dm6]	G	AA	1.099e^-4	0.798	DOWNSTREAM CR45121 INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	17624822	3L_17624822_SNP [dm3] 3L_17631722_SNP [dm6]	G	C	1.104e^-4	0.798	DOWNSTREAM CG7510 EXON CR44566
2L	12676969	2L_12676969_SNP [dm3] 2L_12676969_SNP [dm6]	A	G	1.114e^-4	0.798	INTRON pdm2	TF binding site BDTNP1_TFBS_dl
3L	10699904	3L_10699904_INS [dm3] 3L_10706804_INS [dm6]	A	AA	1.114e^-4	0.798	INTERGENIC
2L	9443434	2L_9443434_SNP [dm3] 2L_9443434_SNP [dm6]	C	T	1.116e^-4	0.798	INTRON numb
3R	21900442	3R_21900442_SNP [dm3] 3R_26074720_SNP [dm6]	A	G	1.121e^-4	0.798	INTERGENIC
3R	21673069	3R_21673069_SNP [dm3] 3R_25847347_SNP [dm6]	T	C	1.125e^-4	0.798	UPSTREAM CR45657 DOWNSTREAM CR45655 EXON CR45656
2R	11576600	2R_11576600_SNP [dm3] 2R_15689095_SNP [dm6]	G	T	1.134e^-4	0.798	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8929077	2L_8929077_SNP [dm3] 2L_8929077_SNP [dm6]	A	G	1.136e^-4	0.798	NON_SYNONYMOUS_CODING CG34398	TF binding site mE1_TFBS_cad
3R	10122680	3R_10122680_SNP [dm3] 3R_14296958_SNP [dm6]	T	A	1.145e^-4	0.798	INTRON CG12207
2L	18328356	2L_18328356_SNP [dm3] 2L_18328356_SNP [dm6]	C	T	1.154e^-4	0.798	INTRON Fas3
3R	13565050	3R_13565050_SNP [dm3] 3R_17739328_SNP [dm6]	T	A	1.159e^-4	0.798	UPSTREAM TyrRII INTRON TyrRII
3R	22784279	3R_22784279_SNP [dm3] 3R_26958557_SNP [dm6]	C	T	1.162e^-4	0.798	UPSTREAM CG6330 INTERGENIC
2L	18930447	2L_18930447_SNP [dm3] 2L_18930447_SNP [dm6]	G	A	1.167e^-4	0.798	INTRON ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12676970	2L_12676970_SNP [dm3] 2L_12676970_SNP [dm6]	A	T	1.168e^-4	0.798	INTRON pdm2	TF binding site BDTNP1_TFBS_dl
2R	15697740	2R_15697740_SNP [dm3] 2R_19810235_SNP [dm6]	T	G	1.172e^-4	0.798	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14560642	3L_14560642_SNP [dm3] 3L_14567542_SNP [dm6]	C	A	1.174e^-4	0.798	INTRON CG42758
3R	4331830	3R_4331830_SNP [dm3] 3R_8506108_SNP [dm6]	C	T	1.174e^-4	0.798	INTERGENIC	TF binding site mE1_TFBS_cad
3L	13310278	3L_13310278_SNP [dm3] 3L_13317178_SNP [dm6]	C	G	1.176e^-4	0.798	INTERGENIC
2R	3245960	2R_3245960_SNP [dm3] 2R_7358455_SNP [dm6]	G	A	1.181e^-4	0.798	SYNONYMOUS_CODING Dscam1 INTRON Dscam1
3L	8711596	3L_8711596_SNP [dm3] 3L_8718496_SNP [dm6]	G	A	1.193e^-4	0.798	DOWNSTREAM SrpRbeta INTERGENIC
X	17120347	X_17120347_SNP [dm3] X_17226314_SNP [dm6]	A	G	1.194e^-4	0.798	SYNONYMOUS_CODING CG10598
3L	7461509	3L_7461509_SNP [dm3] 3L_7468409_SNP [dm6]	G	T	1.206e^-4	0.798	UTR_3_PRIME CG42660 & 2 others
3L	14929590	3L_14929590_SNP [dm3] 3L_14936490_SNP [dm6]	G	C	1.207e^-4	0.798	INTRON DCX-EMAP
3L	14389469	3L_14389469_SNP [dm3] 3L_14396369_SNP [dm6]	C	G	1.207e^-4	0.798	INTERGENIC
2R	6795339	2R_6795339_SNP [dm3] 2R_10907834_SNP [dm6]	G	T	1.212e^-4	0.798	INTERGENIC
2R	17894975	2R_17894975_SNP [dm3] 2R_22007470_SNP [dm6]	C	A	1.234e^-4	0.798	INTRON CG34370
2L	9571394	2L_9571394_SNP [dm3] 2L_9571394_SNP [dm6]	G	A	1.235e^-4	0.798	UTR_5_PRIME CG3838 INTRON CG3838
3L	16071292	3L_16071292_SNP [dm3] 3L_16078192_SNP [dm6]	C	T	1.236e^-4	0.798	INTRON Mbs	TF binding site BDTNP1_TFBS_dl
2R	18762740	2R_18762740_SNP [dm3] 2R_22875217_SNP [dm6]	G	A	1.238e^-4	0.798	UPSTREAM CR45469 DOWNSTREAM CG13532 INTRON PIP5K59B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6299585	3R_6299585_SNP [dm3] 3R_10473863_SNP [dm6]	G	T	1.244e^-4	0.798	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	16824644	3L_16824644_SNP [dm3] 3L_16831544_SNP [dm6]	A	G	1.250e^-4	0.798	INTERGENIC	TF binding site mE1_TFBS_inv
3L	16896018	3L_16896018_SNP [dm3] 3L_16902918_SNP [dm6]	G	A	1.253e^-4	0.798	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo
3R	12514886	3R_12514886_SNP [dm3] 3R_16689164_SNP [dm6]	A	C	1.255e^-4	0.798	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12794500	X_12794500_SNP [dm3] X_12900467_SNP [dm6]	G	A	1.259e^-4	0.798	SYNONYMOUS_CODING CG32649 DOWNSTREAM CG4407	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	13138620	3R_13138620_SNP [dm3] 3R_17312898_SNP [dm6]	G	A	1.261e^-4	0.798	INTERGENIC
3L	12146645	3L_12146645_SNP [dm3] 3L_12153545_SNP [dm6]	T	C	1.261e^-4	0.798	SYNONYMOUS_CODING Nrx-IV
3R	20231859	3R_20231859_SNP [dm3] 3R_24406137_SNP [dm6]	A	C	1.262e^-4	0.798	INTRON nAChRalpha1
3R	10435085	3R_10435085_SNP [dm3] 3R_14609363_SNP [dm6]	G	T	1.272e^-4	0.798	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	15281424	2L_15281424_SNP [dm3] 2L_15281424_SNP [dm6]	C	G	1.273e^-4	0.798	DOWNSTREAM CR45349 INTERGENIC
X	4098987	X_4098987_SNP [dm3] X_4204954_SNP [dm6]	G	C	1.276e^-4	0.798	INTRON Fas2	TF binding site BDTNP1_TFBS_dl
3R	25091548	3R_25091548_SNP [dm3] 3R_29265826_SNP [dm6]	T	A	1.279e^-4	0.798	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3360627	3L_3360627_SNP [dm3] 3L_3360627_SNP [dm6]	A	G	1.283e^-4	0.798	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
2L	10085825	2L_10085825_SNP [dm3] 2L_10085825_SNP [dm6]	C	T	1.284e^-4	0.798	INTRON CG44153
X	20262202	X_20262202_SNP [dm3] X_20391175_SNP [dm6]	C	A	1.288e^-4	0.798	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20317487	2R_20317487_SNP [dm3] 2R_24429964_SNP [dm6]	G	A	1.296e^-4	0.798	INTRON CG15873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18769483	2R_18769483_SNP [dm3] 2R_22881960_SNP [dm6]	A	G	1.300e^-4	0.798	DOWNSTREAM PIP5K59B & 1 other INTRON CG3501	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10852647	3L_10852647_SNP [dm3] 3L_10859547_SNP [dm6]	T	A	1.305e^-4	0.798	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_kn
3R	24344751	3R_24344751_SNP [dm3] 3R_28519029_SNP [dm6]	T	G	1.305e^-4	0.798	DOWNSTREAM CG31051 INTRON Dhc98D	TF binding site mE1_TFBS_chinmo
3L	16983394	3L_16983394_SNP [dm3] 3L_16990294_SNP [dm6]	C	A	1.310e^-4	0.798	INTRON Exn
3R	7065522	3R_7065522_INS [dm3] 3R_11239800_INS [dm6]	T	TAT	1.315e^-4	0.798	DOWNSTREAM scpr-B INTRON CG31388	TF binding site BDTNP1_TFBS_twi
3R	7065524	3R_7065524_MNP [dm3] 3R_11239802_MNP [dm6]	AATAT	CTGCA	1.315e^-4	0.798	DOWNSTREAM scpr-B INTRON CG31388	TF binding site BDTNP1_TFBS_twi
3R	9306338	3R_9306338_SNP [dm3] 3R_13480616_SNP [dm6]	T	A	1.318e^-4	0.798	INTERGENIC
2L	13948455	2L_13948455_SNP [dm3] 2L_13948455_SNP [dm6]	G	A	1.332e^-4	0.798	UPSTREAM CG16884 INTRON Ance-3
3L	11789578	3L_11789578_SNP [dm3] 3L_11796478_SNP [dm6]	G	A	1.337e^-4	0.798	SYNONYMOUS_CODING Klp68D	TF binding site mE1_TFBS_sens
3L	416051	3L_416051_SNP [dm3] 3L_416051_SNP [dm6]	A	G	1.341e^-4	0.798	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	9571449	2L_9571449_SNP [dm3] 2L_9571449_SNP [dm6]	G	A	1.345e^-4	0.798	INTRON CG3838
3L	12287356	3L_12287356_SNP [dm3] 3L_12294256_SNP [dm6]	G	T	1.349e^-4	0.798	INTRON CG4328
2L	21921535	2L_21921535_SNP [dm3] 2L_21921535_SNP [dm6]	T	C	1.357e^-4	0.798	INTERGENIC
X	20262200	X_20262200_SNP [dm3] X_20391173_SNP [dm6]	G	A	1.358e^-4	0.798	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18290401	2R_18290401_SNP [dm3] 2R_22402896_SNP [dm6]	G	A	1.358e^-4	0.798	UPSTREAM babos EXON CR44760	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	416270	3L_416270_SNP [dm3] 3L_416270_SNP [dm6]	G	T	1.365e^-4	0.798	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	10513255	2R_10513255_SNP [dm3] 2R_14625750_SNP [dm6]	C	G	1.384e^-4	0.798	INTERGENIC
2L	13948457	2L_13948457_SNP [dm3] 2L_13948457_SNP [dm6]	A	G	1.401e^-4	0.798	UPSTREAM CG16884 INTRON Ance-3
2L	20538018	2L_20538018_SNP [dm3] 2L_20538018_SNP [dm6]	C	T	1.406e^-4	0.798	INTERGENIC	TF binding site mE1_TFBS_inv
3L	18262635	3L_18262635_SNP [dm3] 3L_18269535_SNP [dm6]	T	A	1.408e^-4	0.798	INTERGENIC
2R	16250428	2R_16250428_SNP [dm3] 2R_20362923_SNP [dm6]	A	C	1.419e^-4	0.798	INTERGENIC
2L	6791647	2L_6791647_SNP [dm3] 2L_6791647_SNP [dm6]	C	A	1.422e^-4	0.798	INTRON nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3966618	3L_3966618_DEL [dm3] 3L_3966618_DEL [dm6]	CCGCTGTCC	C	1.423e^-4	0.798	INTERGENIC
3R	19806727	3R_19806727_INS [dm3] 3R_23981005_INS [dm6]	A	AGTAAAAACTTAAA...	1.425e^-4	0.798	DOWNSTREAM CG31140 INTRON CG31140
3R	17455708	3R_17455708_SNP [dm3] 3R_21629986_SNP [dm6]	G	T	1.433e^-4	0.798	INTRON E2f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	5087274	3R_5087274_SNP [dm3] 3R_9261552_SNP [dm6]	C	A	1.434e^-4	0.798	INTRON VhaM8.9	TF binding site mE1_TFBS_HSA
3L	18277295	3L_18277295_SNP [dm3] 3L_18284195_SNP [dm6]	G	T	1.436e^-4	0.798	INTERGENIC
3R	13565054	3R_13565054_SNP [dm3] 3R_17739332_SNP [dm6]	A	G	1.437e^-4	0.798	UPSTREAM TyrRII INTRON TyrRII
2L	18328268	2L_18328268_SNP [dm3] 2L_18328268_SNP [dm6]	A	T	1.444e^-4	0.798	INTRON Fas3
2L	12661239	2L_12661239_SNP [dm3] 2L_12661239_SNP [dm6]	G	A	1.445e^-4	0.798	INTRON pdm2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr
X	21950053	X_21950053_SNP [dm3] X_22548217_SNP [dm6]	A	G	1.448e^-4	0.798	DOWNSTREAM CG17601 INTERGENIC
2L	19522029	2L_19522029_SNP [dm3] 2L_19522029_SNP [dm6]	C	T	1.460e^-4	0.798	SYNONYMOUS_CODING CG10132	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11724908	2R_11724908_SNP [dm3] 2R_15837403_SNP [dm6]	C	T	1.466e^-4	0.798	INTRON tun	regulatory region REDfly_CRMs
3L	14410358	3L_14410358_DEL [dm3] 3L_14417258_DEL [dm6]	AAGAAAACAATTGGA...	A	1.476e^-4	0.798	INTRON bbg	TF binding site mE1_TFBS_cad
3L	8745109	3L_8745109_SNP [dm3] 3L_8752009_SNP [dm6]	A	G	1.487e^-4	0.798	UPSTREAM CR44527 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14046462	3R_14046462_SNP [dm3] 3R_18220740_SNP [dm6]	C	A	1.487e^-4	0.798	UPSTREAM CG7183 DOWNSTREAM mTerf5 INTRON CG7988	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	21947722	X_21947722_SNP [dm3] X_22545886_SNP [dm6]	A	G	1.487e^-4	0.798	INTERGENIC	transposable element FlyBase
2L	19230795	2L_19230795_SNP [dm3] 2L_19230795_SNP [dm6]	G	A	1.490e^-4	0.798	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	1381522	2L_1381522_SNP [dm3] 2L_1381522_SNP [dm6]	T	C	1.498e^-4	0.798	SYNONYMOUS_CODING lea UTR_3_PRIME lea UPSTREAM CR44898 EXON CR44897	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	3966356	3L_3966356_SNP [dm3] 3L_3966356_SNP [dm6]	T	C	1.499e^-4	0.798	INTERGENIC
3L	15728431	3L_15728431_SNP [dm3] 3L_15735331_SNP [dm6]	A	G	1.499e^-4	0.798	INTERGENIC
3L	16202334	3L_16202334_SNP [dm3] 3L_16209234_SNP [dm6]	A	T	1.504e^-4	0.798	INTERGENIC	TF binding site mE1_TFBS_cad
2R	11862814	2R_11862814_SNP [dm3] 2R_15975309_SNP [dm6]	G	C	1.513e^-4	0.798	NON_SYNONYMOUS_CODING Strn-Mlck
X	13137037	X_13137037_SNP [dm3] X_13243004_SNP [dm6]	C	T	1.520e^-4	0.798	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	19325039	3R_19325039_SNP [dm3] 3R_23499317_SNP [dm6]	T	C	1.521e^-4	0.798	INTERGENIC
3L	13549586	3L_13549586_SNP [dm3] 3L_13556486_SNP [dm6]	C	A	1.526e^-4	0.798	INTRON bru-3
3R	3962355	3R_3962355_SNP [dm3] 3R_8136633_SNP [dm6]	C	T	1.532e^-4	0.798	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	19233563	2L_19233563_SNP [dm3] 2L_19233563_SNP [dm6]	A	G	1.541e^-4	0.798	INTERGENIC
2R	13523349	2R_13523349_SNP [dm3] 2R_17635844_SNP [dm6]	G	C	1.543e^-4	0.798	INTRON CG10936
2R	12821182	2R_12821182_DEL [dm3] 2R_16933677_DEL [dm6]	TTC	T	1.544e^-4	0.798	INTRON Pkc53E	TF binding site BDTNP1_TFBS_twi
2R	17395644	2R_17395644_SNP [dm3] 2R_21508139_SNP [dm6]	C	T	1.549e^-4	0.798	INTRON MESK2
3L	2644981	3L_2644981_SNP [dm3] 3L_2644981_SNP [dm6]	A	T	1.549e^-4	0.798	UPSTREAM CG1143 INTERGENIC
3L	8838357	3L_8838357_SNP [dm3] 3L_8845257_SNP [dm6]	A	G	1.552e^-4	0.798	INTRON dally
2L	13947257	2L_13947257_SNP [dm3] 2L_13947257_SNP [dm6]	T	G	1.557e^-4	0.798	INTRON Ance-3 & 1 other
3L	6840407	3L_6840407_SNP [dm3] 3L_6847307_SNP [dm6]	T	A	1.559e^-4	0.798	INTERGENIC	TF binding site mE1_TFBS_inv
3L	8711560	3L_8711560_SNP [dm3] 3L_8718460_SNP [dm6]	G	A	1.563e^-4	0.798	DOWNSTREAM SrpRbeta INTERGENIC
3L	8711562	3L_8711562_SNP [dm3] 3L_8718462_SNP [dm6]	A	T	1.563e^-4	0.798	DOWNSTREAM SrpRbeta INTERGENIC
3L	8711570	3L_8711570_SNP [dm3] 3L_8718470_SNP [dm6]	T	A	1.563e^-4	0.798	DOWNSTREAM SrpRbeta INTERGENIC
2R	3265898	2R_3265898_SNP [dm3] 2R_7378393_SNP [dm6]	C	A	1.564e^-4	0.798	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
2L	20720966	2L_20720966_SNP [dm3] 2L_20720966_SNP [dm6]	G	T	1.564e^-4	0.798	UPSTREAM CR45306 INTERGENIC
2R	19127148	2R_19127148_SNP [dm3] 2R_23239625_SNP [dm6]	T	G	1.570e^-4	0.798	INTERGENIC
2R	19030555	2R_19030555_SNP [dm3] 2R_23143032_SNP [dm6]	G	T	1.576e^-4	0.798	SYNONYMOUS_CODING Klp59D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	16958014	2L_16958014_SNP [dm3] 2L_16958014_SNP [dm6]	A	C	1.577e^-4	0.798	INTERGENIC
3R	3546169	3R_3546169_SNP [dm3] 3R_7720447_SNP [dm6]	A	T	1.578e^-4	0.798	EXON CR44260
3L	3104455	3L_3104455_MNP [dm3] 3L_3104455_MNP [dm6]	CGC	TCA	1.579e^-4	0.798	INTRON Cht7
3L	10972942	3L_10972942_SNP [dm3] 3L_10979842_SNP [dm6]	G	A	1.583e^-4	0.798	INTERGENIC
2R	13505970	2R_13505970_SNP [dm3] 2R_17618465_SNP [dm6]	C	A	1.593e^-4	0.798	UPSTREAM CG44403 INTRON CG10936
X	9536313	X_9536313_SNP [dm3] X_9642280_SNP [dm6]	C	A	1.593e^-4	0.798	INTRON l_1_G0232
3L	11650776	3L_11650776_SNP [dm3] 3L_11657676_SNP [dm6]	G	A	1.596e^-4	0.798	DOWNSTREAM mir-274 INTRON CG32085
3L	14561228	3L_14561228_SNP [dm3] 3L_14568128_SNP [dm6]	T	G	1.607e^-4	0.798	UTR_3_PRIME CG42758
X	1191641	X_1191641_SNP [dm3] X_1297608_SNP [dm6]	C	A	1.610e^-4	0.798	DOWNSTREAM CG32811 INTRON DAAM	TF binding site mE1_TFBS_chinmo
3R	4400876	3R_4400876_INS [dm3] 3R_8575154_INS [dm6]	T	TT	1.611e^-4	0.798	INTERGENIC
2R	11872516	2R_11872516_SNP [dm3] 2R_15985011_SNP [dm6]	T	A	1.613e^-4	0.798	SYNONYMOUS_CODING Strn-Mlck
2R	12678631	2R_12678631_SNP [dm3] 2R_16791126_SNP [dm6]	G	A	1.613e^-4	0.798	SYNONYMOUS_CODING CG5522	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	14219627	3L_14219627_SNP [dm3] 3L_14226527_SNP [dm6]	C	T	1.620e^-4	0.798	INTRON nuf	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	9685669	3L_9685669_SNP [dm3] 3L_9692569_SNP [dm6]	A	G	1.623e^-4	0.798	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	13137038	X_13137038_SNP [dm3] X_13243005_SNP [dm6]	A	G	1.634e^-4	0.798	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	19908443	2L_19908443_SNP [dm3] 2L_19908443_SNP [dm6]	T	A	1.634e^-4	0.798	INTRON sick
X	12718677	X_12718677_SNP [dm3] X_12824644_SNP [dm6]	G	C	1.636e^-4	0.798	INTRON Pde9
2R	6795340	2R_6795340_SNP [dm3] 2R_10907835_SNP [dm6]	A	G	1.639e^-4	0.798	INTERGENIC
2R	11872555	2R_11872555_SNP [dm3] 2R_15985050_SNP [dm6]	T	C	1.641e^-4	0.798	SYNONYMOUS_CODING Strn-Mlck
2L	14348962	2L_14348962_SNP [dm3] 2L_14348962_SNP [dm6]	C	T	1.642e^-4	0.798	UPSTREAM CR44850 & 1 other DOWNSTREAM l_2_34Fc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5299745	3L_5299745_SNP [dm3] 3L_5306645_SNP [dm6]	A	G	1.652e^-4	0.798	INTERGENIC
X	2926643	X_2926643_SNP [dm3] X_3032610_SNP [dm6]	C	T	1.653e^-4	0.798	INTRON kirre
3R	12745588	3R_12745588_SNP [dm3] 3R_16919866_SNP [dm6]	A	G	1.654e^-4	0.798	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	19719350	2R_19719350_SNP [dm3] 2R_23831827_SNP [dm6]	T	G	1.656e^-4	0.798	INTRON CG5549
3L	10293155	3L_10293155_SNP [dm3] 3L_10300055_SNP [dm6]	A	G	1.659e^-4	0.798	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	8711590	3L_8711590_SNP [dm3] 3L_8718490_SNP [dm6]	T	A	1.660e^-4	0.798	DOWNSTREAM SrpRbeta INTERGENIC
3L	1108132	3L_1108132_SNP [dm3] 3L_1108132_SNP [dm6]	G	T	1.660e^-4	0.798	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11168316	3L_11168316_SNP [dm3] 3L_11175216_SNP [dm6]	G	C	1.668e^-4	0.798	INTRON CG14142
2L	5883882	2L_5883882_SNP [dm3] 2L_5883882_SNP [dm6]	C	A	1.668e^-4	0.798	NON_SYNONYMOUS_CODING CG44574 DOWNSTREAM Sfp26Ac
2L	13735520	2L_13735520_SNP [dm3] 2L_13735520_SNP [dm6]	T	G	1.677e^-4	0.798	UPSTREAM CG31813 INTERGENIC
3R	6218645	3R_6218645_SNP [dm3] 3R_10392923_SNP [dm6]	A	G	1.677e^-4	0.798	INTRON cwo
X	20561606	X_20561606_SNP [dm3] X_20690579_SNP [dm6]	C	T	1.678e^-4	0.798	UPSTREAM run EXON CR45610	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	18769702	2R_18769702_SNP [dm3] 2R_22882179_SNP [dm6]	T	C	1.682e^-4	0.798	DOWNSTREAM PIP5K59B & 1 other INTRON CG3501	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8678952	X_8678952_SNP [dm3] X_8784919_SNP [dm6]	T	C	1.690e^-4	0.798	INTRON Lim1
2R	9692070	2R_9692070_SNP [dm3] 2R_13804565_SNP [dm6]	C	A	1.697e^-4	0.798	INTRON Cpr50Cb
3L	13310271	3L_13310271_SNP [dm3] 3L_13317171_SNP [dm6]	C	T	1.697e^-4	0.798	INTERGENIC
X	3290362	X_3290362_SNP [dm3] X_3396329_SNP [dm6]	T	A	1.699e^-4	0.798	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7140228	3L_7140228_SNP [dm3] 3L_7147128_SNP [dm6]	T	G	1.707e^-4	0.798	SYNONYMOUS_CODING corn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16202321	3L_16202321_SNP [dm3] 3L_16209221_SNP [dm6]	G	T	1.717e^-4	0.798	INTERGENIC	TF binding site mE1_TFBS_cad
3R	10436858	3R_10436858_SNP [dm3] 3R_14611136_SNP [dm6]	T	C	1.720e^-4	0.798	INTRON CG14853
X	2926636	X_2926636_SNP [dm3] X_3032603_SNP [dm6]	T	A	1.737e^-4	0.798	INTRON kirre
2L	6791732	2L_6791732_SNP [dm3] 2L_6791732_SNP [dm6]	G	T	1.747e^-4	0.798	SYNONYMOUS_CODING nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	16051314	X_16051314_SNP [dm3] X_16157281_SNP [dm6]	C	T	1.748e^-4	0.798	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15483234	3L_15483234_SNP [dm3] 3L_15490134_SNP [dm6]	A	C	1.749e^-4	0.798	INTERGENIC
3L	13426284	3L_13426284_DEL [dm3] 3L_13433184_DEL [dm6]	GCTGA	G	1.751e^-4	0.798	DOWNSTREAM tRNA:V4:70BCa & 1 other INTRON CG10713
2R	19651906	2R_19651906_SNP [dm3] 2R_23764383_SNP [dm6]	T	C	1.759e^-4	0.798	INTRON CG9850
2R	13506030	2R_13506030_SNP [dm3] 2R_17618525_SNP [dm6]	C	A	1.770e^-4	0.798	UPSTREAM CG44403 INTRON CG10936
2L	19242855	2L_19242855_SNP [dm3] 2L_19242855_SNP [dm6]	A	G	1.776e^-4	0.798	INTERGENIC
3R	17861398	3R_17861398_SNP [dm3] 3R_22035676_SNP [dm6]	T	C	1.785e^-4	0.798	UPSTREAM pit & 1 other DOWNSTREAM Fadd INTRON pit	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	17385515	2L_17385515_SNP [dm3] 2L_17385515_SNP [dm6]	T	A	1.791e^-4	0.798	UPSTREAM CLIP-190 INTRON CLIP-190	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Ubx
2L	18871864	2L_18871864_SNP [dm3] 2L_18871864_SNP [dm6]	C	T	1.794e^-4	0.798	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3680402	3L_3680402_SNP [dm3] 3L_3680402_SNP [dm6]	T	C	1.797e^-4	0.798	INTERGENIC
2R	12116981	2R_12116981_SNP [dm3] 2R_16229476_SNP [dm6]	C	T	1.798e^-4	0.798	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14710885	3L_14710885_DEL [dm3] 3L_14717785_DEL [dm6]	GAAAAA	T	1.816e^-4	0.798	INTRON ome
3L	20900870	3L_20900870_SNP [dm3] 3L_20907770_SNP [dm6]	G	A	1.818e^-4	0.798	INTERGENIC	TF binding site mE1_TFBS_inv
X	15413677	X_15413677_SNP [dm3] X_15519644_SNP [dm6]	C	G	1.821e^-4	0.798	INTRON Ac13E
2L	18328275	2L_18328275_DEL [dm3] 2L_18328275_DEL [dm6]	GTGATTCAGCAAG...	G	1.825e^-4	0.798	INTRON Fas3
3L	18998179	3L_18998179_SNP [dm3] 3L_19005079_SNP [dm6]	G	A	1.826e^-4	0.798	SYNONYMOUS_CODING nkd UTR_3_PRIME nkd	TF binding site mE1_TFBS_chinmo
2L	19133534	2L_19133534_SNP [dm3] 2L_19133534_SNP [dm6]	G	A	1.830e^-4	0.798	UPSTREAM brat & 1 other DOWNSTREAM l_2_37Ce INTRON l_2_37Cg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3L	10756244	3L_10756244_SNP [dm3] 3L_10763144_SNP [dm6]	A	G	1.834e^-4	0.798	INTERGENIC
3L	9693521	3L_9693521_SNP [dm3] 3L_9700421_SNP [dm6]	G	A	1.834e^-4	0.798	UTR_3_PRIME UbcD4 DOWNSTREAM CG6761 & 1 other
X	8246042	X_8246042_DEL [dm3] X_8352009_DEL [dm6]	ACA	A	1.842e^-4	0.798	INTRON nAChRalpha3
2L	795404	2L_795404_SNP [dm3] 2L_795404_SNP [dm6]	T	G	1.842e^-4	0.798	INTERGENIC
2L	13211544	2L_13211544_SNP [dm3] 2L_13211544_SNP [dm6]	T	C	1.843e^-4	0.798	NON_SYNONYMOUS_CODING CG15482 DOWNSTREAM Pect & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11650616	3L_11650616_SNP [dm3] 3L_11657516_SNP [dm6]	C	T	1.843e^-4	0.798	DOWNSTREAM mir-274 INTRON CG32085
3R	1124488	3R_1124488_SNP [dm3] 3R_5298766_SNP [dm6]	C	G	1.852e^-4	0.798	UTR_5_PRIME mtd INTRON mtd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_zfh1
X	12795293	X_12795293_SNP [dm3] X_12901260_SNP [dm6]	C	A	1.853e^-4	0.798	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	18486575	2L_18486575_SNP [dm3] 2L_18486575_SNP [dm6]	C	T	1.863e^-4	0.798	INTRON CG10176	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	5962889	3R_5962889_SNP [dm3] 3R_10137167_SNP [dm6]	C	A	1.863e^-4	0.798	INTRON tws
3L	2645026	3L_2645026_SNP [dm3] 3L_2645026_SNP [dm6]	T	A	1.864e^-4	0.798	UPSTREAM CG1143 INTERGENIC
2L	18328372	2L_18328372_SNP [dm3] 2L_18328372_SNP [dm6]	C	G	1.865e^-4	0.798	INTRON Fas3
3R	13570345	3R_13570345_SNP [dm3] 3R_17744623_SNP [dm6]	A	T	1.874e^-4	0.798	INTRON TyrRII	TF binding site mE1_TFBS_cad
3R	10651802	3R_10651802_SNP [dm3] 3R_14826080_SNP [dm6]	T	C	1.877e^-4	0.798	SYNONYMOUS_CODING btsz
3L	5886015	3L_5886015_SNP [dm3] 3L_5892915_SNP [dm6]	C	G	1.878e^-4	0.798	INTERGENIC
X	10443026	X_10443026_SNP [dm3] X_10548993_SNP [dm6]	C	T	1.879e^-4	0.798	INTRON spri
3L	11597825	3L_11597825_SNP [dm3] 3L_11604725_SNP [dm6]	G	T	1.886e^-4	0.798	UTR_3_PRIME CG7368 DOWNSTREAM CG6091
3R	6296073	3R_6296073_INS [dm3] 3R_10470351_INS [dm6]	A	ACTATAAGTCAATC...	1.893e^-4	0.798	INTERGENIC
3R	24357564	3R_24357564_SNP [dm3] 3R_28531842_SNP [dm6]	A	G	1.897e^-4	0.798	INTRON Ppn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	12414903	2L_12414903_SNP [dm3] 2L_12414903_SNP [dm6]	G	T	1.900e^-4	0.798	INTRON vir-1
3R	6253276	3R_6253276_SNP [dm3] 3R_10427554_SNP [dm6]	G	A	1.902e^-4	0.798	INTERGENIC
2L	19238833	2L_19238833_SNP [dm3] 2L_19238833_SNP [dm6]	A	G	1.904e^-4	0.798	INTERGENIC
3L	5461675	3L_5461675_SNP [dm3] 3L_5468575_SNP [dm6]	G	C	1.904e^-4	0.798	INTERGENIC
3L	412348	3L_412348_SNP [dm3] 3L_412348_SNP [dm6]	T	C	1.909e^-4	0.798	INTERGENIC
2R	13156683	2R_13156683_SNP [dm3] 2R_17269178_SNP [dm6]	T	C	1.916e^-4	0.798	INTRON mbl	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run
X	8156863	X_8156863_SNP [dm3] X_8262830_SNP [dm6]	T	C	1.916e^-4	0.798	INTRON CG1632	TF binding site BDTNP1_TFBS_da
2L	18872053	2L_18872053_SNP [dm3] 2L_18872053_SNP [dm6]	C	A	1.932e^-4	0.798	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4098959	X_4098959_SNP [dm3] X_4204926_SNP [dm6]	C	T	1.934e^-4	0.798	INTRON Fas2	TF binding site BDTNP1_TFBS_dl
2L	18328357	2L_18328357_SNP [dm3] 2L_18328357_SNP [dm6]	A	T	1.946e^-4	0.798	INTRON Fas3
3L	16983298	3L_16983298_INS [dm3] 3L_16990198_INS [dm6]	A	AG	1.948e^-4	0.798	INTRON Exn
2R	20783402	2R_20783402_SNP [dm3] 2R_24895879_SNP [dm6]	T	C	1.953e^-4	0.798	INTRON NaCP60E	TF binding site mE1_TFBS_chinmo
3R	25727862	3R_25727862_SNP [dm3] 3R_29902140_SNP [dm6]	G	T	1.954e^-4	0.798	INTRON CG31038
X	8156894	X_8156894_INS [dm3] X_8262861_INS [dm6]	T	TTCCACGCTCCGAACCAAAT...	1.954e^-4	0.798	INTRON CG1632	TF binding site BDTNP1_TFBS_da
2L	12325115	2L_12325115_SNP [dm3] 2L_12325115_SNP [dm6]	T	C	1.957e^-4	0.798	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11251263	2R_11251263_SNP [dm3] 2R_15363758_SNP [dm6]	T	A	1.960e^-4	0.798	INTRON unc-5
2R	17638309	2R_17638309_SNP [dm3] 2R_21750804_SNP [dm6]	G	T	1.961e^-4	0.798	INTERGENIC
3L	12484410	3L_12484410_SNP [dm3] 3L_12491310_SNP [dm6]	A	G	1.965e^-4	0.798	UPSTREAM CG10660 & 1 other DOWNSTREAM CG10657 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
2L	19079237	2L_19079237_SNP [dm3] 2L_19079237_SNP [dm6]	C	T	1.975e^-4	0.798	UPSTREAM CG10700 DOWNSTREAM Lim3 INTERGENIC
3R	21673019	3R_21673019_SNP [dm3] 3R_25847297_SNP [dm6]	T	G	1.986e^-4	0.798	UPSTREAM CR45657 DOWNSTREAM CR45654 & 1 other EXON CR45656
3L	17456726	3L_17456726_SNP [dm3] 3L_17463626_SNP [dm6]	A	G	1.987e^-4	0.798	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	12486718	3R_12486718_SNP [dm3] 3R_16660996_SNP [dm6]	C	T	1.988e^-4	0.798	INTRON Ubx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20314670	2R_20314670_SNP [dm3] 2R_24427147_SNP [dm6]	C	G	1.991e^-4	0.798	INTRON prom
3L	11168337	3L_11168337_SNP [dm3] 3L_11175237_SNP [dm6]	A	T	1.999e^-4	0.798	INTRON CG14142	TF binding site mE1_TFBS_cad
3L	11168347	3L_11168347_INS [dm3] 3L_11175247_INS [dm6]	T	TG	1.999e^-4	0.798	INTRON CG14142	TF binding site mE1_TFBS_cad
3L	11168322	3L_11168322_INS [dm3] 3L_11175222_INS [dm6]	T	TGGTGA	2.000e^-4	0.798	INTRON CG14142
3L	11168335	3L_11168335_INS [dm3] 3L_11175235_INS [dm6]	A	AAGT	2.000e^-4	0.798	INTRON CG14142	TF binding site mE1_TFBS_cad
3R	3224581	3R_3224581_SNP [dm3] 3R_7398859_SNP [dm6]	G	C	2.008e^-4	0.798	INTERGENIC
2R	12443558	2R_12443558_INS [dm3] 2R_16556053_INS [dm6]	T	TT	2.009e^-4	0.798	INTRON Syn2
3R	14624053	3R_14624053_SNP [dm3] 3R_18798331_SNP [dm6]	G	A	2.017e^-4	0.798	DOWNSTREAM CG18208 INTERGENIC
3L	15483232	3L_15483232_SNP [dm3] 3L_15490132_SNP [dm6]	A	T	2.032e^-4	0.798	INTERGENIC
X	21948303	X_21948303_SNP [dm3] X_22546467_SNP [dm6]	T	C	2.036e^-4	0.798	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	15413495	X_15413495_SNP [dm3] X_15519462_SNP [dm6]	A	C	2.042e^-4	0.798	INTRON Ac13E
3L	14370112	3L_14370112_SNP [dm3] 3L_14377012_SNP [dm6]	C	A	2.048e^-4	0.798	INTERGENIC
X	12795209	X_12795209_SNP [dm3] X_12901176_SNP [dm6]	G	T	2.052e^-4	0.798	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	19232181	2L_19232181_SNP [dm3] 2L_19232181_SNP [dm6]	C	T	2.052e^-4	0.798	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14293806	3R_14293806_SNP [dm3] 3R_18468084_SNP [dm6]	G	A	2.054e^-4	0.798	INTRON fru
X	8405227	X_8405227_SNP [dm3] X_8511194_SNP [dm6]	C	G	2.054e^-4	0.798	UTR_5_PRIME CG33181 INTRON CG33181	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	18287092	2L_18287092_SNP [dm3] 2L_18287092_SNP [dm6]	T	C	2.056e^-4	0.798	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	16239759	2L_16239759_SNP [dm3] 2L_16239759_SNP [dm6]	T	C	2.058e^-4	0.798	INTRON CG42817
3L	7467554	3L_7467554_SNP [dm3] 3L_7474454_SNP [dm6]	G	A	2.062e^-4	0.798	INTERGENIC
3R	3962357	3R_3962357_SNP [dm3] 3R_8136635_SNP [dm6]	T	A	2.064e^-4	0.798	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	18215091	3R_18215091_SNP [dm3] 3R_22389369_SNP [dm6]	T	C	2.067e^-4	0.798	START_GAINED CG5379 UTR_5_PRIME CG5379 UPSTREAM CG5379 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	11149206	3L_11149206_SNP [dm3] 3L_11156106_SNP [dm6]	A	G	2.070e^-4	0.798	INTRON CG32082	TF binding site BDTNP1_TFBS_twi
2L	2279895	2L_2279895_SNP [dm3] 2L_2279895_SNP [dm6]	G	A	2.075e^-4	0.798	UPSTREAM CR43753 INTERGENIC
3R	13185875	3R_13185875_SNP [dm3] 3R_17360153_SNP [dm6]	G	A	2.079e^-4	0.798	INTRON beat-IIa
2L	13948437	2L_13948437_SNP [dm3] 2L_13948437_SNP [dm6]	G	A	2.088e^-4	0.798	UPSTREAM CG16884 INTRON Ance-3
X	15264242	X_15264242_SNP [dm3] X_15370209_SNP [dm6]	T	C	2.102e^-4	0.798	INTRON acj6
X	9536658	X_9536658_SNP [dm3] X_9642625_SNP [dm6]	T	A	2.110e^-4	0.798	INTRON l_1_G0232	TF binding site mE1_TFBS_inv
2L	21906167	2L_21906167_SNP [dm3] 2L_21906167_SNP [dm6]	A	T	2.111e^-4	0.798	UPSTREAM CG1428 INTERGENIC
X	21950019	X_21950019_SNP [dm3] X_22548183_SNP [dm6]	T	G	2.113e^-4	0.798	DOWNSTREAM CG17601 INTERGENIC
2L	15365250	2L_15365250_SNP [dm3] 2L_15365250_SNP [dm6]	C	T	2.121e^-4	0.798	INTERGENIC
2R	18748554	2R_18748554_SNP [dm3] 2R_22861031_SNP [dm6]	A	T	2.125e^-4	0.798	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	8137206	2R_8137206_SNP [dm3] 2R_12249701_SNP [dm6]	T	C	2.125e^-4	0.798	INTERGENIC
3L	2981701	3L_2981701_SNP [dm3] 3L_2981701_SNP [dm6]	A	G	2.132e^-4	0.798	SYNONYMOUS_CODING CG2107	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19469104	2L_19469104_SNP [dm3] 2L_19469104_SNP [dm6]	A	G	2.137e^-4	0.798	UPSTREAM CR45722 DOWNSTREAM CR45723 INTERGENIC
3L	12109684	3L_12109684_SNP [dm3] 3L_12116584_SNP [dm6]	A	G	2.138e^-4	0.798	INTRON l_3_j2D3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16723369	2R_16723369_SNP [dm3] 2R_20835864_SNP [dm6]	C	T	2.142e^-4	0.798	UTR_5_PRIME insc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	11168327	3L_11168327_SNP [dm3] 3L_11175227_SNP [dm6]	C	A	2.153e^-4	0.798	INTRON CG14142
2R	14724100	2R_14724100_SNP [dm3] 2R_18836595_SNP [dm6]	A	C	2.155e^-4	0.798	DOWNSTREAM CG15099 INTRON CG15083
X	5080122	X_5080122_SNP [dm3] X_5186089_SNP [dm6]	A	C	2.155e^-4	0.798	INTRON rg & 1 other
2L	16958010	2L_16958010_SNP [dm3] 2L_16958010_SNP [dm6]	A	G	2.160e^-4	0.798	INTERGENIC
2R	11571935	2R_11571935_SNP [dm3] 2R_15684430_SNP [dm6]	G	T	2.161e^-4	0.798	SYNONYMOUS_CODING Ranbp11 DOWNSTREAM CG30082 EXON CR43429	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6299522	3R_6299522_SNP [dm3] 3R_10473800_SNP [dm6]	C	T	2.166e^-4	0.798	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14293780	3R_14293780_DEL [dm3] 3R_18468058_DEL [dm6]	TTTT	T	2.175e^-4	0.798	INTRON fru
3L	13649314	3L_13649314_SNP [dm3] 3L_13656214_SNP [dm6]	C	A	2.187e^-4	0.798	INTRON bru-3	TF binding site BDTNP1_TFBS_twi
3L	14376180	3L_14376180_SNP [dm3] 3L_14383080_SNP [dm6]	C	T	2.188e^-4	0.798	UTR_3_PRIME CG43120
X	19198545	X_19198545_SNP [dm3] X_19304512_SNP [dm6]	C	T	2.196e^-4	0.798	INTRON CG8051
2R	19651865	2R_19651865_SNP [dm3] 2R_23764342_SNP [dm6]	G	A	2.204e^-4	0.798	INTRON CG9850
3L	13487564	3L_13487564_SNP [dm3] 3L_13494464_SNP [dm6]	G	T	2.209e^-4	0.798	INTRON Tgi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	17633388	3L_17633388_SNP [dm3] 3L_17640288_SNP [dm6]	A	G	2.209e^-4	0.798	INTRON Pep	TF binding site mE1_TFBS_cad
2R	15844015	2R_15844015_SNP [dm3] 2R_19956510_SNP [dm6]	A	C	2.209e^-4	0.798	SYNONYMOUS_CODING CG44623
X	10895007	X_10895007_SNP [dm3] X_11000974_SNP [dm6]	A	G	2.209e^-4	0.798	INTRON CG42339
3L	4696998	3L_4696998_SNP [dm3] 3L_4696998_SNP [dm6]	G	T	2.215e^-4	0.798	UPSTREAM CG13713 INTRON RhoGEF64C	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	4697013	3L_4697013_SNP [dm3] 3L_4697013_SNP [dm6]	G	A	2.215e^-4	0.798	UPSTREAM CG13713 INTRON RhoGEF64C	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	19469329	2L_19469329_SNP [dm3] 2L_19469329_SNP [dm6]	C	T	2.232e^-4	0.798	DOWNSTREAM CR45723 EXON CR45722
3L	14931260	3L_14931260_SNP [dm3] 3L_14938160_SNP [dm6]	G	C	2.243e^-4	0.798	INTRON DCX-EMAP
3R	25786488	3R_25786488_SNP [dm3] 3R_29960766_SNP [dm6]	T	G	2.243e^-4	0.798	INTRON TkR99D
X	6258888	X_6258888_SNP [dm3] X_6364855_SNP [dm6]	A	C	2.246e^-4	0.798	SYNONYMOUS_CODING swa	TF binding site mE1_TFBS_chinmo
3L	7461504	3L_7461504_SNP [dm3] 3L_7468404_SNP [dm6]	A	C	2.247e^-4	0.798	UTR_3_PRIME CG42660 & 2 others
2L	5903361	2L_5903361_SNP [dm3] 2L_5903361_SNP [dm6]	A	G	2.252e^-4	0.798	UTR_3_PRIME CG9021	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22359715	X_22359715_SNP [dm3] X_22957879_SNP [dm6]	A	C	2.252e^-4	0.798	DOWNSTREAM CR45502 & 1 other INTERGENIC
2L	19238840	2L_19238840_SNP [dm3] 2L_19238840_SNP [dm6]	A	T	2.253e^-4	0.798	INTERGENIC
3L	3819425	3L_3819425_SNP [dm3] 3L_3819425_SNP [dm6]	C	T	2.254e^-4	0.798	INTRON enc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	17550346	2R_17550346_SNP [dm3] 2R_21662841_SNP [dm6]	A	C	2.269e^-4	0.798	UTR_5_PRIME pirk UPSTREAM CR44748 & 1 other
2L	21896969	2L_21896969_SNP [dm3] 2L_21896969_SNP [dm6]	A	C	2.271e^-4	0.798	SYNONYMOUS_CODING CG11629	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19871664	X_19871664_SNP [dm3] X_19977631_SNP [dm6]	C	G	2.271e^-4	0.798	INTERGENIC
3L	312104	3L_312104_SNP [dm3] 3L_312104_SNP [dm6]	C	T	2.284e^-4	0.798	UPSTREAM fwd INTRON fwd	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	13696626	2L_13696626_SNP [dm3] 2L_13696626_SNP [dm6]	G	A	2.284e^-4	0.798	INTRON CG31814
3R	8650933	3R_8650933_SNP [dm3] 3R_12825211_SNP [dm6]	A	G	2.286e^-4	0.798	INTERGENIC
3L	11587676	3L_11587676_DEL [dm3] 3L_11594576_DEL [dm6]	GT	G	2.295e^-4	0.798	UPSTREAM CR45671 & 1 other INTERGENIC
X	16443965	X_16443965_SNP [dm3] X_16549932_SNP [dm6]	G	A	2.309e^-4	0.798	INTRON Arp2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5122899	3L_5122899_SNP [dm3] 3L_5129799_SNP [dm6]	T	A	2.315e^-4	0.798	SYNONYMOUS_CODING CG4597
3L	9546282	3L_9546282_SNP [dm3] 3L_9553182_SNP [dm6]	A	T	2.316e^-4	0.798	UTR_5_PRIME CG42673
3R	8477372	3R_8477372_SNP [dm3] 3R_12651650_SNP [dm6]	T	A	2.321e^-4	0.798	NON_SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_sens
3L	8546733	3L_8546733_SNP [dm3] 3L_8553633_SNP [dm6]	G	A	2.325e^-4	0.798	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7147769	2L_7147769_SNP [dm3] 2L_7147769_SNP [dm6]	G	T	2.327e^-4	0.798	INTRON Pvf3	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
X	9536672	X_9536672_SNP [dm3] X_9642639_SNP [dm6]	G	T	2.327e^-4	0.798	INTRON l_1_G0232	TF binding site mE1_TFBS_inv
2R	18952468	2R_18952468_SNP [dm3] 2R_23064945_SNP [dm6]	C	G	2.338e^-4	0.798	SYNONYMOUS_CODING PPO3 UPSTREAM CG9890	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	16429233	2R_16429233_SNP [dm3] 2R_20541728_SNP [dm6]	T	C	2.341e^-4	0.798	UPSTREAM CR44652 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8137696	2R_8137696_SNP [dm3] 2R_12250191_SNP [dm6]	A	T	2.341e^-4	0.798	INTERGENIC
3L	15728441	3L_15728441_SNP [dm3] 3L_15735341_SNP [dm6]	C	T	2.344e^-4	0.798	INTERGENIC
2L	8696998	2L_8696998_SNP [dm3] 2L_8696998_SNP [dm6]	C	G	2.358e^-4	0.798	INTRON Hnf4	TF binding site mE1_TFBS_cnc
2R	7408586	2R_7408586_SNP [dm3] 2R_11521081_SNP [dm6]	C	T	2.359e^-4	0.798	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	2.360e^-4	0.798	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15733645	2R_15733645_SNP [dm3] 2R_19846140_SNP [dm6]	C	G	2.365e^-4	0.798	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	17808641	3R_17808641_SNP [dm3] 3R_21982919_SNP [dm6]	G	T	2.370e^-4	0.798	INTRON Eip93F
2L	5901886	2L_5901886_SNP [dm3] 2L_5901886_SNP [dm6]	T	A	2.373e^-4	0.798	INTERGENIC
2L	13152778	2L_13152778_SNP [dm3] 2L_13152778_SNP [dm6]	A	G	2.376e^-4	0.798	INTERGENIC
X	10908770	X_10908770_SNP [dm3] X_11014737_SNP [dm6]	G	T	2.387e^-4	0.798	INTRON CG42339
3L	11408920	3L_11408920_INS [dm3] 3L_11415820_INS [dm6]	G	GATGGGT	2.392e^-4	0.798	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	8391972	3L_8391972_SNP [dm3] 3L_8398872_SNP [dm6]	A	T	2.392e^-4	0.798	INTRON CG7120
3R	14850563	3R_14850563_SNP [dm3] 3R_19024841_SNP [dm6]	T	A	2.397e^-4	0.798	UTR_3_PRIME CG14286 UPSTREAM CG6005 & 1 other
3L	8548292	3L_8548292_SNP [dm3] 3L_8555192_SNP [dm6]	A	G	2.398e^-4	0.798	INTRON rhea	TF binding site BDTNP1_TFBS_twi
3R	2857414	3R_2857414_SNP [dm3] 3R_7031692_SNP [dm6]	C	T	2.400e^-4	0.798	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	4843704	3L_4843704_SNP [dm3] 3L_4843704_SNP [dm6]	C	A	2.403e^-4	0.798	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	13272867	3L_13272867_SNP [dm3] 3L_13279767_SNP [dm6]	A	G	2.407e^-4	0.798	UPSTREAM tRNA:CR32123:Psi DOWNSTREAM caps INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	5058655	2R_5058655_SNP [dm3] 2R_9171150_SNP [dm6]	A	G	2.409e^-4	0.798	SYNONYMOUS_CODING Rme-8	TF binding site mE1_TFBS_cad
2L	21906528	2L_21906528_SNP [dm3] 2L_21906528_SNP [dm6]	A	G	2.431e^-4	0.798	NON_SYNONYMOUS_CODING CG1428	TF binding site mE1_TFBS_cad
2L	19241897	2L_19241897_SNP [dm3] 2L_19241897_SNP [dm6]	A	G	2.436e^-4	0.798	INTERGENIC
2R	14077068	2R_14077068_SNP [dm3] 2R_18189563_SNP [dm6]	G	A	2.440e^-4	0.798	UTR_3_PRIME CG14500 INTRON CG33958
3L	19536920	3L_19536920_SNP [dm3] 3L_19543820_SNP [dm6]	A	T	2.442e^-4	0.798	UTR_5_PRIME CG9279 UPSTREAM CG9279 DOWNSTREAM l_3_76BDr & 1 other
3L	3959490	3L_3959490_SNP [dm3] 3L_3959490_SNP [dm6]	C	G	2.448e^-4	0.798	SYNONYMOUS_CODING CG12605	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17127094	X_17127094_SNP [dm3] X_17233061_SNP [dm6]	T	G	2.452e^-4	0.798	START_GAINED f UTR_5_PRIME f	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	1193718	X_1193718_SNP [dm3] X_1299685_SNP [dm6]	G	A	2.453e^-4	0.798	INTRON DAAM	TF binding site mE1_TFBS_chinmo
X	17127570	X_17127570_SNP [dm3] X_17233537_SNP [dm6]	G	T	2.454e^-4	0.798	INTRON f
2R	17895349	2R_17895349_SNP [dm3] 2R_22007844_SNP [dm6]	G	C	2.455e^-4	0.798	INTRON CG34370	TF binding site mE1_TFBS_HSA
3L	6839225	3L_6839225_SNP [dm3] 3L_6846125_SNP [dm6]	A	G	2.460e^-4	0.798	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	3095868	3L_3095868_SNP [dm3] 3L_3095868_SNP [dm6]	C	G	2.464e^-4	0.798	UPSTREAM tRNA:CR32289 & 2 others DOWNSTREAM tRNA:CR32288 INTRON Cht7	TF binding site BDTNP1_TFBS_dl
2L	18871893	2L_18871893_SNP [dm3] 2L_18871893_SNP [dm6]	G	A	2.465e^-4	0.798	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14850529	3R_14850529_SNP [dm3] 3R_19024807_SNP [dm6]	A	C	2.468e^-4	0.798	UTR_3_PRIME CG14286 UPSTREAM CG6005 & 1 other	TF binding site mE1_TFBS_cad
2R	3264528	2R_3264528_SNP [dm3] 2R_7377023_SNP [dm6]	C	T	2.469e^-4	0.798	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5903120	2L_5903120_SNP [dm3] 2L_5903120_SNP [dm6]	C	T	2.474e^-4	0.798	DOWNSTREAM CG9021 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14302048	3R_14302048_SNP [dm3] 3R_18476326_SNP [dm6]	A	G	2.475e^-4	0.798	INTRON fru
3L	411916	3L_411916_SNP [dm3] 3L_411916_SNP [dm6]	A	G	2.477e^-4	0.798	INTERGENIC
2L	9430498	2L_9430498_SNP [dm3] 2L_9430498_SNP [dm6]	T	A	2.479e^-4	0.798	UPSTREAM FucTB & 1 other INTRON FucTB
2L	17385461	2L_17385461_SNP [dm3] 2L_17385461_SNP [dm6]	A	G	2.480e^-4	0.798	UTR_5_PRIME CLIP-190 UPSTREAM CLIP-190	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Ubx
2L	6791485	2L_6791485_SNP [dm3] 2L_6791485_SNP [dm6]	T	A	2.482e^-4	0.798	INTRON nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	21948258	X_21948258_SNP [dm3] X_22546422_SNP [dm6]	G	A	2.484e^-4	0.798	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	18753291	3R_18753291_SNP [dm3] 3R_22927569_SNP [dm6]	G	C	2.485e^-4	0.798	INTRON klg
2R	8443942	2R_8443942_SNP [dm3] 2R_12556437_SNP [dm6]	A	C	2.487e^-4	0.798	INTRON fra
X	12273528	X_12273528_SNP [dm3] X_12379495_SNP [dm6]	C	A	2.489e^-4	0.798	INTERGENIC
X	19020595	X_19020595_SNP [dm3] X_19126562_SNP [dm6]	G	A	2.489e^-4	0.798	INTRON tgy
2R	13270117	2R_13270117_SNP [dm3] 2R_17382612_SNP [dm6]	T	A	2.493e^-4	0.798	INTERGENIC	TF binding site mE1_TFBS_inv
3L	460756	3L_460756_SNP [dm3] 3L_460756_SNP [dm6]	C	T	2.499e^-4	0.798	INTRON klar
2R	18010238	2R_18010238_SNP [dm3] 2R_22122733_SNP [dm6]	C	T	2.507e^-4	0.798	UPSTREAM mei-S332 & 1 other INTRON mei-S332	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15689315	3L_15689315_SNP [dm3] 3L_15696215_SNP [dm6]	A	G	2.508e^-4	0.798	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11573868	2R_11573868_SNP [dm3] 2R_15686363_SNP [dm6]	C	T	2.513e^-4	0.798	SYNONYMOUS_CODING Ranbp11 UPSTREAM CG30082	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2L	16013909	2L_16013909_SNP [dm3] 2L_16013909_SNP [dm6]	T	A	2.513e^-4	0.798	INTRON beat-Ic
2L	11194697	2L_11194697_SNP [dm3] 2L_11194697_SNP [dm6]	A	G	2.513e^-4	0.798	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3R	10436798	3R_10436798_SNP [dm3] 3R_14611076_SNP [dm6]	T	C	2.515e^-4	0.798	INTRON CG14853
2R	1229109	2R_1229109_INS [dm3] 2R_5341604_INS [dm6]	T	TTTTATCTTAAACATAAGTG...	2.520e^-4	0.798	UPSTREAM CG10465 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	20252359	2R_20252359_SNP [dm3] 2R_24364836_SNP [dm6]	C	T	2.525e^-4	0.798	INTRON bs & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2926734	X_2926734_SNP [dm3] X_3032701_SNP [dm6]	C	A	2.525e^-4	0.798	INTRON kirre
2R	16868926	2R_16868926_SNP [dm3] 2R_20981421_SNP [dm6]	T	C	2.528e^-4	0.798	SYNONYMOUS_CODING CG9313	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13118875	3R_13118875_SNP [dm3] 3R_17293153_SNP [dm6]	G	A	2.537e^-4	0.798	INTERGENIC
2R	12112716	2R_12112716_SNP [dm3] 2R_16225211_SNP [dm6]	A	G	2.537e^-4	0.798	UTR_5_PRIME CG15706
2R	14097828	2R_14097828_SNP [dm3] 2R_18210323_SNP [dm6]	C	A	2.538e^-4	0.798	EXON CR45147	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18010243	2R_18010243_SNP [dm3] 2R_22122738_SNP [dm6]	G	A	2.542e^-4	0.798	UPSTREAM mei-S332 & 1 other INTRON mei-S332	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15751786	2L_15751786_SNP [dm3] 2L_15751786_SNP [dm6]	A	G	2.551e^-4	0.798	UPSTREAM l_2_35Di & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18910653	2L_18910653_SNP [dm3] 2L_18910653_SNP [dm6]	G	C	2.558e^-4	0.798	INTERGENIC
3R	10120898	3R_10120898_SNP [dm3] 3R_14295176_SNP [dm6]	A	G	2.558e^-4	0.798	INTRON CG12207
X	20272005	X_20272005_SNP [dm3] X_20400978_SNP [dm6]	A	T	2.560e^-4	0.798	SYNONYMOUS_CODING HERC2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14850571	3R_14850571_SNP [dm3] 3R_19024849_SNP [dm6]	C	G	2.561e^-4	0.798	UTR_3_PRIME CG14286 UPSTREAM CG6005 & 1 other
3L	536533	3L_536533_SNP [dm3] 3L_536533_SNP [dm6]	A	G	2.563e^-4	0.798	INTRON klar
2L	5901812	2L_5901812_SNP [dm3] 2L_5901812_SNP [dm6]	A	C	2.564e^-4	0.798	INTERGENIC
2R	18475324	2R_18475324_DEL [dm3] 2R_22587819_DEL [dm6]	GA	G	2.566e^-4	0.798	INTRON dnr1
2L	18328652	2L_18328652_SNP [dm3] 2L_18328652_SNP [dm6]	A	G	2.569e^-4	0.798	INTRON Fas3
3L	16867402	3L_16867402_SNP [dm3] 3L_16874302_SNP [dm6]	C	A	2.569e^-4	0.798	INTRON Lmpt
2L	18871861	2L_18871861_SNP [dm3] 2L_18871861_SNP [dm6]	G	A	2.572e^-4	0.798	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26671686	3R_26671686_SNP [dm3] 3R_30845964_SNP [dm6]	T	A	2.580e^-4	0.799	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	2669602	2L_2669602_SNP [dm3] 2L_2669602_SNP [dm6]	G	T	2.582e^-4	0.799	UPSTREAM Gr23a INTERGENIC
2L	16239646	2L_16239646_SNP [dm3] 2L_16239646_SNP [dm6]	T	C	2.587e^-4	0.799	INTRON CG42817
2L	16239654	2L_16239654_SNP [dm3] 2L_16239654_SNP [dm6]	T	C	2.591e^-4	0.799	INTRON CG42817
2L	19242831	2L_19242831_SNP [dm3] 2L_19242831_SNP [dm6]	T	G	2.614e^-4	0.803	INTERGENIC
X	5080125	X_5080125_SNP [dm3] X_5186092_SNP [dm6]	C	A	2.617e^-4	0.803	INTRON rg & 1 other
3L	3966453	3L_3966453_SNP [dm3] 3L_3966453_SNP [dm6]	G	T	2.624e^-4	0.803	INTERGENIC
3L	2683655	3L_2683655_SNP [dm3] 3L_2683655_SNP [dm6]	A	G	2.628e^-4	0.803	INTRON Fife
3R	3546186	3R_3546186_SNP [dm3] 3R_7720464_SNP [dm6]	A	G	2.629e^-4	0.803	INTRON CR44260
3R	9771775	3R_9771775_SNP [dm3] 3R_13946053_SNP [dm6]	G	C	2.629e^-4	0.803	UPSTREAM Art6 INTERGENIC
2R	4947678	2R_4947678_SNP [dm3] 2R_9060173_SNP [dm6]	T	C	2.647e^-4	0.806	UPSTREAM CG13743 DOWNSTREAM CG8197 INTRON CG13743	TF binding site mE1_TFBS_cad
X	8156849	X_8156849_SNP [dm3] X_8262816_SNP [dm6]	T	C	2.649e^-4	0.806	INTRON CG1632	TF binding site BDTNP1_TFBS_da
2R	13505799	2R_13505799_SNP [dm3] 2R_17618294_SNP [dm6]	C	A	2.663e^-4	0.808	UPSTREAM CG44403 INTRON CG10936
2L	14344257	2L_14344257_SNP [dm3] 2L_14344257_SNP [dm6]	C	A	2.670e^-4	0.808	NON_SYNONYMOUS_CODING CG33090
2R	11330161	2R_11330161_SNP [dm3] 2R_15442656_SNP [dm6]	G	A	2.672e^-4	0.808	INTRON CG43729
X	16434148	X_16434148_SNP [dm3] X_16540115_SNP [dm6]	A	C	2.675e^-4	0.808	NON_SYNONYMOUS_CODING CG9903	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11571818	2R_11571818_SNP [dm3] 2R_15684313_SNP [dm6]	C	T	2.688e^-4	0.808	SYNONYMOUS_CODING Ranbp11 DOWNSTREAM CG30082 EXON CR43429	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9685627	3L_9685627_SNP [dm3] 3L_9692527_SNP [dm6]	A	G	2.704e^-4	0.808	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	9685634	3L_9685634_SNP [dm3] 3L_9692534_SNP [dm6]	C	T	2.704e^-4	0.808	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	9686029	3L_9686029_SNP [dm3] 3L_9692929_SNP [dm6]	A	T	2.704e^-4	0.808	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
3L	9686121	3L_9686121_SNP [dm3] 3L_9693021_SNP [dm6]	T	A	2.704e^-4	0.808	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
3L	8391974	3L_8391974_SNP [dm3] 3L_8398874_SNP [dm6]	G	A	2.707e^-4	0.808	INTRON CG7120
2L	10636889	2L_10636889_SNP [dm3] 2L_10636889_SNP [dm6]	C	T	2.707e^-4	0.808	INTRON CG7329
3R	12114646	3R_12114646_INS [dm3] 3R_16288924_INS [dm6]	T	TTT	2.715e^-4	0.808	UPSTREAM gish INTRON gish	TF binding site mE1_TFBS_inv
2R	12037009	2R_12037009_SNP [dm3] 2R_16149504_SNP [dm6]	C	T	2.716e^-4	0.808	SYNONYMOUS_CODING CG10731 UPSTREAM Ext2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	14388889	3L_14388889_SNP [dm3] 3L_14395789_SNP [dm6]	G	A	2.717e^-4	0.808	INTERGENIC
3L	12019463	3L_12019463_SNP [dm3] 3L_12026363_SNP [dm6]	G	A	2.719e^-4	0.808	INTRON rols
2R	12078185	2R_12078185_SNP [dm3] 2R_16190680_SNP [dm6]	C	A	2.726e^-4	0.808	NON_SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13948410	2L_13948410_SNP [dm3] 2L_13948410_SNP [dm6]	A	T	2.727e^-4	0.808	UPSTREAM CG16884 INTRON Ance-3
3L	4841144	3L_4841144_SNP [dm3] 3L_4841144_SNP [dm6]	C	T	2.736e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	9420876	2R_9420876_SNP [dm3] 2R_13533371_SNP [dm6]	C	T	2.764e^-4	0.813	UPSTREAM Vmat INTRON Vmat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	13527374	2R_13527374_SNP [dm3] 2R_17639869_SNP [dm6]	G	A	2.767e^-4	0.813	UPSTREAM CG10936 INTERGENIC
3L	11901084	3L_11901084_SNP [dm3] 3L_11907984_SNP [dm6]	T	C	2.770e^-4	0.813	INTRON CG44837
3L	11901090	3L_11901090_SNP [dm3] 3L_11907990_SNP [dm6]	C	T	2.770e^-4	0.813	INTRON CG44837
2L	9487588	2L_9487588_SNP [dm3] 2L_9487588_SNP [dm6]	A	G	2.772e^-4	0.813	INTERGENIC
2L	5260361	2L_5260361_SNP [dm3] 2L_5260361_SNP [dm6]	G	A	2.782e^-4	0.815	DOWNSTREAM CR44744 INTRON tkv
2R	11340150	2R_11340150_SNP [dm3] 2R_15452645_SNP [dm6]	A	T	2.786e^-4	0.815	INTRON CG43729
2R	8862122	2R_8862122_SNP [dm3] 2R_12974617_SNP [dm6]	G	A	2.805e^-4	0.818	INTRON Psc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14541160	3L_14541160_SNP [dm3] 3L_14548060_SNP [dm6]	T	C	2.805e^-4	0.818	INTRON CG9238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21900398	3R_21900398_SNP [dm3] 3R_26074676_SNP [dm6]	T	C	2.823e^-4	0.82	INTERGENIC
2L	14912654	2L_14912654_SNP [dm3] 2L_14912654_SNP [dm6]	G	T	2.823e^-4	0.82	INTRON CG42313
3R	18478815	3R_18478815_SNP [dm3] 3R_22653093_SNP [dm6]	T	C	2.828e^-4	0.82	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11594899	3L_11594899_SNP [dm3] 3L_11601799_SNP [dm6]	A	G	2.832e^-4	0.82	INTRON CG7368
2R	19522673	2R_19522673_SNP [dm3] 2R_23635150_SNP [dm6]	G	T	2.838e^-4	0.82	INTRON retn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	13483213	3R_13483213_SNP [dm3] 3R_17657491_SNP [dm6]	T	G	2.846e^-4	0.82	DOWNSTREAM tRNA:CR31577 & 1 other INTRON CG14322
2R	16289150	2R_16289150_SNP [dm3] 2R_20401645_SNP [dm6]	G	A	2.851e^-4	0.82	INTERGENIC
2L	14075418	2L_14075418_SNP [dm3] 2L_14075418_SNP [dm6]	A	G	2.854e^-4	0.82	INTRON nAChRalpha5	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15428091	2R_15428091_SNP [dm3] 2R_19540586_SNP [dm6]	C	A	2.855e^-4	0.82	INTRON sm
2L	13948496	2L_13948496_SNP [dm3] 2L_13948496_SNP [dm6]	C	T	2.860e^-4	0.82	INTRON Ance-3
3R	25752413	3R_25752413_SNP [dm3] 3R_29926691_SNP [dm6]	G	A	2.869e^-4	0.82	UPSTREAM Jon99Ci & 1 other INTERGENIC
3L	9211776	3L_9211776_SNP [dm3] 3L_9218676_SNP [dm6]	C	A	2.876e^-4	0.82	INTERGENIC
2R	19024849	2R_19024849_SNP [dm3] 2R_23137326_SNP [dm6]	T	G	2.876e^-4	0.82	INTERGENIC
2R	19651890	2R_19651890_SNP [dm3] 2R_23764367_SNP [dm6]	G	A	2.877e^-4	0.82	INTRON CG9850
2L	18328363	2L_18328363_SNP [dm3] 2L_18328363_SNP [dm6]	T	A	2.878e^-4	0.82	INTRON Fas3
3R	3203795	3R_3203795_SNP [dm3] 3R_7378073_SNP [dm6]	C	A	2.881e^-4	0.82	INTERGENIC
3L	13553816	3L_13553816_DEL [dm3] 3L_13560716_DEL [dm6]	GTCGACGTAGCGACACT...	G	2.887e^-4	0.82	INTRON bru-3
2R	19409961	2R_19409961_SNP [dm3] 2R_23522438_SNP [dm6]	C	A	2.907e^-4	0.821	INTRON RabX1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	11907181	2R_11907181_SNP [dm3] 2R_16019676_SNP [dm6]	A	G	2.929e^-4	0.821	INTRON CG8399
X	3381344	X_3381344_SNP [dm3] X_3487311_SNP [dm6]	T	C	2.931e^-4	0.821	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_sens
3R	9771782	3R_9771782_SNP [dm3] 3R_13946060_SNP [dm6]	A	G	2.931e^-4	0.821	UPSTREAM Art6 INTERGENIC
3R	14395022	3R_14395022_SNP [dm3] 3R_18569300_SNP [dm6]	G	A	2.932e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	2596450	3L_2596450_SNP [dm3] 3L_2596450_SNP [dm6]	G	A	2.938e^-4	0.821	SYNONYMOUS_CODING CG16984 UTR_3_PRIME CG12182 DOWNSTREAM dos & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11330698	2R_11330698_SNP [dm3] 2R_15443193_SNP [dm6]	G	T	2.953e^-4	0.821	INTRON CG43729
X	12795357	X_12795357_SNP [dm3] X_12901324_SNP [dm6]	A	C	2.954e^-4	0.821	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	15649286	2L_15649286_SNP [dm3] 2L_15649286_SNP [dm6]	A	G	2.958e^-4	0.821	SYNONYMOUS_CODING CG4587
X	12795292	X_12795292_SNP [dm3] X_12901259_SNP [dm6]	T	C	2.961e^-4	0.821	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	10923062	2L_10923062_SNP [dm3] 2L_10923062_SNP [dm6]	A	G	2.961e^-4	0.821	INTRON dpr2
X	2926031	X_2926031_SNP [dm3] X_3031998_SNP [dm6]	C	A	2.963e^-4	0.821	INTRON kirre
X	19019176	X_19019176_SNP [dm3] X_19125143_SNP [dm6]	C	A	2.963e^-4	0.821	UTR_3_PRIME tgy UPSTREAM CG15882 DOWNSTREAM tgy
2R	6929352	2R_6929352_SNP [dm3] 2R_11041847_SNP [dm6]	A	T	2.966e^-4	0.821	INTRON luna	TF binding site mE1_TFBS_cad
2L	19927566	2L_19927566_SNP [dm3] 2L_19927566_SNP [dm6]	T	G	2.968e^-4	0.821	INTRON sick
X	4856926	X_4856926_SNP [dm3] X_4962893_SNP [dm6]	A	T	2.973e^-4	0.821	INTRON CR44833
3R	14514760	3R_14514760_SNP [dm3] 3R_18689038_SNP [dm6]	C	T	2.984e^-4	0.821	SYNONYMOUS_CODING Muc91C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15732665	2L_15732665_SNP [dm3] 2L_15732665_SNP [dm6]	T	C	2.987e^-4	0.821	UPSTREAM CycE INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	17590911	2R_17590911_SNP [dm3] 2R_21703406_SNP [dm6]	A	G	2.990e^-4	0.821	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3L	14974486	3L_14974486_SNP [dm3] 3L_14981386_SNP [dm6]	A	G	2.993e^-4	0.821	SYNONYMOUS_CODING CG3349
3R	13953022	3R_13953022_SNP [dm3] 3R_18127300_SNP [dm6]	C	T	2.994e^-4	0.821	SYNONYMOUS_CODING sr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9686313	3L_9686313_SNP [dm3] 3L_9693213_SNP [dm6]	C	A	2.999e^-4	0.821	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
3L	1073755	3L_1073755_DEL [dm3] 3L_1073755_DEL [dm6]	TGCCCGCCT	T	3.002e^-4	0.821	INTRON bab1
2R	17550085	2R_17550085_SNP [dm3] 2R_21662580_SNP [dm6]	C	G	3.003e^-4	0.821	UPSTREAM CR44748 & 1 other INTRON pirk
3L	12055408	3L_12055408_SNP [dm3] 3L_12062308_SNP [dm6]	G	A	3.014e^-4	0.821	INTRON rols	TF binding site BDTNP1_TFBS_da
3R	24362223	3R_24362223_SNP [dm3] 3R_28536501_SNP [dm6]	C	T	3.021e^-4	0.821	INTRON Ppn
3L	16691072	3L_16691072_DEL [dm3] 3L_16697972_DEL [dm6]	AA	A	3.028e^-4	0.821	DOWNSTREAM CR45179 INTRON Lasp & 1 other
3R	5894517	3R_5894517_SNP [dm3] 3R_10068795_SNP [dm6]	C	A	3.031e^-4	0.821	DOWNSTREAM CG33784 INTERGENIC
X	16129663	X_16129663_SNP [dm3] X_16235630_SNP [dm6]	G	A	3.039e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	17864934	3R_17864934_SNP [dm3] 3R_22039212_SNP [dm6]	A	G	3.041e^-4	0.821	DOWNSTREAM pit INTERGENIC
2R	18962423	2R_18962423_SNP [dm3] 2R_23074900_SNP [dm6]	C	T	3.050e^-4	0.821	UTR_5_PRIME CG3085 UPSTREAM snoRNA:229 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17283642	2R_17283642_SNP [dm3] 2R_21396137_SNP [dm6]	A	G	3.052e^-4	0.821	INTRON Sdc
2L	4768554	2L_4768554_SNP [dm3] 2L_4768554_SNP [dm6]	A	G	3.068e^-4	0.821	INTRON CG15630
3R	6227022	3R_6227022_SNP [dm3] 3R_10401300_SNP [dm6]	C	T	3.073e^-4	0.821	SYNONYMOUS_CODING mthl11 DOWNSTREAM cwo
3R	4045004	3R_4045004_SNP [dm3] 3R_8219282_SNP [dm6]	A	G	3.077e^-4	0.821	NON_SYNONYMOUS_CODING CG7800 UPSTREAM CG18249
2L	6398352	2L_6398352_SNP [dm3] 2L_6398352_SNP [dm6]	G	T	3.085e^-4	0.821	INTRON CG42368
2L	19469294	2L_19469294_SNP [dm3] 2L_19469294_SNP [dm6]	T	C	3.093e^-4	0.821	DOWNSTREAM CR45723 EXON CR45722
3R	21891631	3R_21891631_SNP [dm3] 3R_26065909_SNP [dm6]	T	A	3.097e^-4	0.821	INTERGENIC
X	5440782	X_5440782_SNP [dm3] X_5546749_SNP [dm6]	T	C	3.097e^-4	0.821	SYNONYMOUS_CODING Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	8173850	X_8173850_SNP [dm3] X_8279817_SNP [dm6]	A	G	3.110e^-4	0.821	UTR_3_PRIME nAChRalpha3	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
X	9721384	X_9721384_DEL [dm3] X_9827351_DEL [dm6]	AA	A	3.111e^-4	0.821	INTRON CG32698
2L	20052673	2L_20052673_SNP [dm3] 2L_20052673_SNP [dm6]	C	T	3.113e^-4	0.821	INTRON sNPF
2L	9851138	2L_9851138_SNP [dm3] 2L_9851138_SNP [dm6]	T	C	3.115e^-4	0.821	INTRON nAChRalpha6
2L	14686016	2L_14686016_SNP [dm3] 2L_14686016_SNP [dm6]	A	G	3.116e^-4	0.821	INTRON osp
3R	8477395	3R_8477395_SNP [dm3] 3R_12651673_SNP [dm6]	A	T	3.117e^-4	0.821	NON_SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3077646	2R_3077646_SNP [dm3] 2R_7190141_SNP [dm6]	T	G	3.122e^-4	0.821	INTRON pk
2L	21891509	2L_21891509_SNP [dm3] 2L_21891509_SNP [dm6]	G	T	3.126e^-4	0.821	UPSTREAM CR45362 INTERGENIC
2L	19517217	2L_19517217_SNP [dm3] 2L_19517217_SNP [dm6]	A	G	3.126e^-4	0.821	UPSTREAM CG10186 DOWNSTREAM CR43363 INTERGENIC
2R	13511055	2R_13511055_SNP [dm3] 2R_17623550_SNP [dm6]	A	G	3.126e^-4	0.821	INTRON CG10936
3R	21900102	3R_21900102_SNP [dm3] 3R_26074380_SNP [dm6]	T	C	3.128e^-4	0.821	INTERGENIC
2R	13687918	2R_13687918_INS [dm3] 2R_17800413_INS [dm6]	C	CGCACAC	3.131e^-4	0.821	UTR_3_PRIME Dhit UPSTREAM grh DOWNSTREAM CR45270	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	14293768	3R_14293768_SNP [dm3] 3R_18468046_SNP [dm6]	A	G	3.133e^-4	0.821	INTRON fru
2L	18486597	2L_18486597_SNP [dm3] 2L_18486597_SNP [dm6]	T	C	3.135e^-4	0.821	INTRON CG10176	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6460371	2R_6460371_SNP [dm3] 2R_10572866_SNP [dm6]	C	A	3.140e^-4	0.821	INTRON psq
2R	7076790	2R_7076790_SNP [dm3] 2R_11189285_SNP [dm6]	G	A	3.141e^-4	0.821	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3819431	3L_3819431_SNP [dm3] 3L_3819431_SNP [dm6]	A	T	3.145e^-4	0.821	INTRON enc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	16389454	2R_16389454_SNP [dm3] 2R_20501949_SNP [dm6]	C	T	3.145e^-4	0.821	INTERGENIC	regulatory region REDfly_CRMs
2L	12415207	2L_12415207_SNP [dm3] 2L_12415207_SNP [dm6]	A	G	3.148e^-4	0.821	INTRON vir-1
2R	16314370	2R_16314370_SNP [dm3] 2R_20426865_SNP [dm6]	G	C	3.149e^-4	0.821	INTRON CG12484
2L	7452411	2L_7452411_SNP [dm3] 2L_7452411_SNP [dm6]	T	A	3.162e^-4	0.823	DOWNSTREAM Gr28a INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
X	21950030	X_21950030_SNP [dm3] X_22548194_SNP [dm6]	T	C	3.175e^-4	0.823	DOWNSTREAM CG17601 INTERGENIC
3L	14816333	3L_14816333_SNP [dm3] 3L_14823233_SNP [dm6]	G	A	3.177e^-4	0.823	INTRON CG17839
X	20276949	X_20276949_SNP [dm3] X_20405922_SNP [dm6]	G	A	3.179e^-4	0.823	SYNONYMOUS_CODING HERC2	TF binding site mE1_TFBS_chinmo
3R	3273507	3R_3273507_SNP [dm3] 3R_7447785_SNP [dm6]	G	A	3.184e^-4	0.823	INTERGENIC
2R	14692581	2R_14692581_SNP [dm3] 2R_18805076_SNP [dm6]	T	A	3.184e^-4	0.823	UPSTREAM CR44468 INTERGENIC	TF binding site mE1_TFBS_Trl
X	8173885	X_8173885_SNP [dm3] X_8279852_SNP [dm6]	C	A	3.189e^-4	0.823	UTR_3_PRIME nAChRalpha3	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
3R	18146724	3R_18146724_INS [dm3] 3R_22321002_INS [dm6]	C	CGCC	3.192e^-4	0.823	INTRON CG34377
3L	1523002	3L_1523002_SNP [dm3] 3L_1523002_SNP [dm6]	G	A	3.196e^-4	0.823	UTR_3_PRIME Psa DOWNSTREAM CG12090	TF binding site mE1_TFBS_cad
X	9536660	X_9536660_SNP [dm3] X_9642627_SNP [dm6]	T	A	3.218e^-4	0.825	INTRON l_1_G0232	TF binding site mE1_TFBS_inv
3R	10695984	3R_10695984_SNP [dm3] 3R_14870262_SNP [dm6]	G	A	3.223e^-4	0.825	INTRON btsz
2L	19079235	2L_19079235_SNP [dm3] 2L_19079235_SNP [dm6]	T	C	3.223e^-4	0.825	UPSTREAM CG10700 DOWNSTREAM Lim3 INTERGENIC
2L	2324325	2L_2324325_INS [dm3] 2L_2324325_INS [dm6]	A	AGAGAGGGCTAATA...	3.235e^-4	0.825	INTRON CG9967 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11606267	3R_11606267_SNP [dm3] 3R_15780545_SNP [dm6]	T	A	3.240e^-4	0.825	NON_SYNONYMOUS_CODING CG5614	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1212228	2R_1212228_SNP [dm3] 2R_5324723_SNP [dm6]	C	G	3.241e^-4	0.825	INTRON sxc	transposable element FlyBase
3R	6226686	3R_6226686_SNP [dm3] 3R_10400964_SNP [dm6]	G	T	3.242e^-4	0.825	UPSTREAM mthl11 DOWNSTREAM cwo INTERGENIC
X	22267450	X_22267450_SNP [dm3] X_22865614_SNP [dm6]	A	T	3.249e^-4	0.825	INTRON CG42346
3R	10652861	3R_10652861_SNP [dm3] 3R_14827139_SNP [dm6]	T	C	3.250e^-4	0.825	SYNONYMOUS_CODING btsz UTR_5_PRIME btsz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21427786	3R_21427786_SNP [dm3] 3R_25602064_SNP [dm6]	T	A	3.254e^-4	0.825	UTR_3_PRIME msi DOWNSTREAM msi INTRON ymp
2L	9581811	2L_9581811_SNP [dm3] 2L_9581811_SNP [dm6]	A	T	3.265e^-4	0.825	UPSTREAM gcm INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	12795213	X_12795213_SNP [dm3] X_12901180_SNP [dm6]	C	T	3.276e^-4	0.825	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	454926	3L_454926_SNP [dm3] 3L_454926_SNP [dm6]	C	A	3.280e^-4	0.825	INTRON klar
3R	5959014	3R_5959014_SNP [dm3] 3R_10133292_SNP [dm6]	C	A	3.282e^-4	0.825	UTR_5_PRIME tws INTRON tws	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	12795198	X_12795198_SNP [dm3] X_12901165_SNP [dm6]	G	A	3.284e^-4	0.825	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	20267857	X_20267857_SNP [dm3] X_20396830_SNP [dm6]	C	T	3.295e^-4	0.825	INTRON HERC2	TF binding site BDTNP1_TFBS_da
3L	7001310	3L_7001310_SNP [dm3] 3L_7008210_SNP [dm6]	T	G	3.297e^-4	0.825	INTRON Mp
3R	19239786	3R_19239786_SNP [dm3] 3R_23414064_SNP [dm6]	T	C	3.303e^-4	0.825	INTRON CG4374
3R	5145048	3R_5145048_SNP [dm3] 3R_9319326_SNP [dm6]	G	A	3.305e^-4	0.825	INTRON CG8861
3L	14376089	3L_14376089_SNP [dm3] 3L_14382989_SNP [dm6]	T	G	3.309e^-4	0.825	UTR_3_PRIME CG43120
3R	14394850	3R_14394850_SNP [dm3] 3R_18569128_SNP [dm6]	C	A	3.313e^-4	0.825	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19901797	2L_19901797_DEL [dm3] 2L_19901797_DEL [dm6]	TAAAAACAAAA...	T	3.313e^-4	0.825	INTRON sick
3R	5085332	3R_5085332_SNP [dm3] 3R_9259610_SNP [dm6]	C	A	3.316e^-4	0.825	INTRON CG8436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	22909511	2L_22909511_SNP [dm3] 2L_23016779_SNP [dm6]	G	A	3.319e^-4	0.825	INTRON Cht3
3R	21344585	3R_21344585_SNP [dm3] 3R_25518863_SNP [dm6]	G	T	3.323e^-4	0.825	INTRON msi	TF binding site mE1_TFBS_Trl
X	12795289	X_12795289_SNP [dm3] X_12901256_SNP [dm6]	G	A	3.331e^-4	0.825	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	20660246	2L_20660246_SNP [dm3] 2L_20660246_SNP [dm6]	G	T	3.332e^-4	0.825	SYNONYMOUS_CODING CG31678	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21341350	3R_21341350_SNP [dm3] 3R_25515628_SNP [dm6]	G	T	3.341e^-4	0.825	UPSTREAM msi INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	12543060	2R_12543060_SNP [dm3] 2R_16655555_SNP [dm6]	A	T	3.347e^-4	0.825	UTR_3_PRIME Picot UPSTREAM Nach
X	18691722	X_18691722_SNP [dm3] X_18797689_SNP [dm6]	A	T	3.351e^-4	0.825	UPSTREAM bnb INTRON Pk17E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21898854	2L_21898854_SNP [dm3] 2L_21898854_SNP [dm6]	G	T	3.360e^-4	0.825	UPSTREAM CG11629 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	14616588	3R_14616588_SNP [dm3] 3R_18790866_SNP [dm6]	T	C	3.365e^-4	0.825	INTRON CG7720
3L	9806536	3L_9806536_SNP [dm3] 3L_9813436_SNP [dm6]	A	T	3.367e^-4	0.825	UPSTREAM CG43897 INTERGENIC
3R	13419810	3R_13419810_SNP [dm3] 3R_17594088_SNP [dm6]	T	C	3.368e^-4	0.825	UPSTREAM CG7587 INTERGENIC
3R	3305418	3R_3305418_SNP [dm3] 3R_7479696_SNP [dm6]	G	A	3.384e^-4	0.825	INTERGENIC
3L	9685540	3L_9685540_SNP [dm3] 3L_9692440_SNP [dm6]	A	G	3.384e^-4	0.825	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	2241808	3R_2241808_SNP [dm3] 3R_6416086_SNP [dm6]	C	T	3.385e^-4	0.825	INTRON gpp
3L	12147115	3L_12147115_SNP [dm3] 3L_12154015_SNP [dm6]	T	C	3.387e^-4	0.825	SYNONYMOUS_CODING Nrx-IV
X	12665890	X_12665890_SNP [dm3] X_12771857_SNP [dm6]	C	G	3.392e^-4	0.825	UTR_3_PRIME CG3812 & 1 other DOWNSTREAM CG3812
3R	25765336	3R_25765336_SNP [dm3] 3R_29939614_SNP [dm6]	T	C	3.394e^-4	0.825	SYNONYMOUS_CODING CG15523
3R	14660016	3R_14660016_SNP [dm3] 3R_18834294_SNP [dm6]	G	A	3.404e^-4	0.825	INTRON CG18208
3L	8981433	3L_8981433_SNP [dm3] 3L_8988333_SNP [dm6]	C	T	3.405e^-4	0.825	DOWNSTREAM CG5280 INTRON CG5068
3L	11791572	3L_11791572_SNP [dm3] 3L_11798472_SNP [dm6]	A	C	3.406e^-4	0.825	UTR_3_PRIME Klp68D DOWNSTREAM CG10361
2L	2758732	2L_2758732_SNP [dm3] 2L_2758732_SNP [dm6]	A	G	3.408e^-4	0.825	SYNONYMOUS_CODING CG9960 UTR_3_PRIME Snapin UPSTREAM CR44772 DOWNSTREAM Bacc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_chinmo
2L	3755318	2L_3755318_SNP [dm3] 2L_3755318_SNP [dm6]	G	A	3.414e^-4	0.825	DOWNSTREAM CG10019 INTERGENIC
3L	18412202	3L_18412202_SNP [dm3] 3L_18419102_SNP [dm6]	G	T	3.417e^-4	0.825	INTERGENIC
X	12794590	X_12794590_SNP [dm3] X_12900557_SNP [dm6]	T	C	3.429e^-4	0.825	SYNONYMOUS_CODING CG32649 DOWNSTREAM CG4407	TF binding site BDTNP1_TFBS_dl
3L	12571334	3L_12571334_SNP [dm3] 3L_12578234_SNP [dm6]	A	T	3.436e^-4	0.825	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5691157	X_5691157_DEL [dm3] X_5797124_DEL [dm6]	GCAAATGG	G	3.436e^-4	0.825	INTERGENIC
2R	16709511	2R_16709511_SNP [dm3] 2R_20822006_SNP [dm6]	G	A	3.440e^-4	0.825	UTR_3_PRIME insc
2L	5136849	2L_5136849_SNP [dm3] 2L_5136849_SNP [dm6]	T	C	3.441e^-4	0.825	SYNONYMOUS_CODING Msp300 INTRON Msp300
2R	11712201	2R_11712201_SNP [dm3] 2R_15824696_SNP [dm6]	C	T	3.443e^-4	0.825	INTRON tun	TF binding site mE1_TFBS_cad
2R	12520926	2R_12520926_SNP [dm3] 2R_16633421_SNP [dm6]	A	C	3.443e^-4	0.825	SYNONYMOUS_CODING Alk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	3202516	3R_3202516_DEL [dm3] 3R_7376794_DEL [dm6]	AA	A	3.443e^-4	0.825	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13916681	3L_13916681_DEL [dm3] 3L_13923581_DEL [dm6]	AA	A	3.454e^-4	0.825	INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	20128377	2L_20128377_SNP [dm3] 2L_20128377_SNP [dm6]	C	T	3.461e^-4	0.825	INTERGENIC
3R	25752385	3R_25752385_SNP [dm3] 3R_29926663_SNP [dm6]	T	G	3.471e^-4	0.825	UPSTREAM Jon99Ci & 1 other INTERGENIC
3R	6249047	3R_6249047_SNP [dm3] 3R_10423325_SNP [dm6]	G	A	3.486e^-4	0.825	INTERGENIC
2L	10984556	2L_10984556_SNP [dm3] 2L_10984556_SNP [dm6]	T	C	3.487e^-4	0.825	INTRON piwi	transposable element FlyBase
3L	16495547	3L_16495547_SNP [dm3] 3L_16502447_SNP [dm6]	A	G	3.493e^-4	0.825	SYNONYMOUS_CODING CG43373 INTRON CG43373	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18376026	2L_18376026_SNP [dm3] 2L_18376026_SNP [dm6]	C	A	3.495e^-4	0.825	INTRON Fas3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	8402577	X_8402577_SNP [dm3] X_8508544_SNP [dm6]	G	A	3.497e^-4	0.825	INTRON CG33181
X	18461523	X_18461523_SNP [dm3] X_18567490_SNP [dm6]	G	A	3.498e^-4	0.825	INTRON Bx
3L	13426307	3L_13426307_SNP [dm3] 3L_13433207_SNP [dm6]	T	G	3.502e^-4	0.825	DOWNSTREAM tRNA:V4:70BCa & 1 other INTRON CG10713
3R	16202443	3R_16202443_SNP [dm3] 3R_20376721_SNP [dm6]	C	A	3.508e^-4	0.825	INTERGENIC
3L	11146526	3L_11146526_SNP [dm3] 3L_11153426_SNP [dm6]	G	A	3.517e^-4	0.825	INTRON CG32082
3R	25759599	3R_25759599_SNP [dm3] 3R_29933877_SNP [dm6]	C	T	3.520e^-4	0.825	NON_SYNONYMOUS_CODING CG42557 START_GAINED CG42558 UTR_5_PRIME CG42558 UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18871904	2L_18871904_SNP [dm3] 2L_18871904_SNP [dm6]	T	A	3.522e^-4	0.825	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12879790	3L_12879790_SNP [dm3] 3L_12886690_SNP [dm6]	T	C	3.543e^-4	0.825	NON_SYNONYMOUS_CODING CG14120	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17125917	X_17125917_SNP [dm3] X_17231884_SNP [dm6]	T	A	3.547e^-4	0.825	UPSTREAM CG10597 INTERGENIC	transposable element FlyBase
X	13222043	X_13222043_SNP [dm3] X_13328010_SNP [dm6]	A	T	3.550e^-4	0.825	INTRON IP3K2
2L	19327049	2L_19327049_SNP [dm3] 2L_19327049_SNP [dm6]	G	A	3.554e^-4	0.825	UPSTREAM CR45258 DOWNSTREAM CR45700 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2L	7700765	2L_7700765_SNP [dm3] 2L_7700765_SNP [dm6]	A	T	3.560e^-4	0.825	INTRON Tep2
2R	4950454	2R_4950454_SNP [dm3] 2R_9062949_SNP [dm6]	G	A	3.563e^-4	0.825	INTRON ana	regulatory region REDfly_CRMs
3L	15526821	3L_15526821_SNP [dm3] 3L_15533721_SNP [dm6]	A	T	3.569e^-4	0.825	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
X	12794493	X_12794493_SNP [dm3] X_12900460_SNP [dm6]	T	C	3.571e^-4	0.825	NON_SYNONYMOUS_CODING CG32649 DOWNSTREAM CG4407	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	13195904	2R_13195904_SNP [dm3] 2R_17308399_SNP [dm6]	G	A	3.575e^-4	0.825	INTRON mbl
X	4094020	X_4094020_SNP [dm3] X_4199987_SNP [dm6]	T	C	3.577e^-4	0.825	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14749049	2L_14749049_SNP [dm3] 2L_14749049_SNP [dm6]	T	A	3.577e^-4	0.825	INTERGENIC
3L	9555349	3L_9555349_SNP [dm3] 3L_9562249_SNP [dm6]	A	G	3.580e^-4	0.825	INTRON CG42673
2L	5689816	2L_5689816_SNP [dm3] 2L_5689816_SNP [dm6]	C	A	3.587e^-4	0.825	UPSTREAM CR44819 DOWNSTREAM CR44820 INTERGENIC
3L	17455414	3L_17455414_SNP [dm3] 3L_17462314_SNP [dm6]	A	G	3.589e^-4	0.825	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12119901	3L_12119901_SNP [dm3] 3L_12126801_SNP [dm6]	A	G	3.590e^-4	0.825	SYNONYMOUS_CODING Ir68b	TF binding site mE1_TFBS_chinmo
X	21947315	X_21947315_MNP [dm3] X_22545479_MNP [dm6]	TAA	AGG	3.592e^-4	0.825	INTERGENIC	transposable element FlyBase
2L	19896738	2L_19896738_SNP [dm3] 2L_19896738_SNP [dm6]	T	A	3.596e^-4	0.825	INTRON sick
3L	458753	3L_458753_DEL [dm3] 3L_458753_DEL [dm6]	GG	G	3.603e^-4	0.825	INTRON klar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13637068	2L_13637068_SNP [dm3] 2L_13637068_SNP [dm6]	A	C	3.605e^-4	0.825	DOWNSTREAM kuz INTRON kuz
2R	12543496	2R_12543496_SNP [dm3] 2R_16655991_SNP [dm6]	T	C	3.611e^-4	0.825	UPSTREAM Nach INTRON Picot	TF binding site mE1_TFBS_cad
2L	7743361	2L_7743361_SNP [dm3] 2L_7743361_SNP [dm6]	C	T	3.612e^-4	0.825	DOWNSTREAM CG7214 INTERGENIC
2L	13973246	2L_13973246_SNP [dm3] 2L_13973246_SNP [dm6]	T	A	3.614e^-4	0.825	UTR_3_PRIME NimC1 UPSTREAM He DOWNSTREAM NimC1
3L	11901083	3L_11901083_SNP [dm3] 3L_11907983_SNP [dm6]	A	C	3.618e^-4	0.825	INTRON CG44837
2R	19719423	2R_19719423_SNP [dm3] 2R_23831900_SNP [dm6]	A	G	3.634e^-4	0.825	INTRON CG5549
X	12273532	X_12273532_SNP [dm3] X_12379499_SNP [dm6]	A	C	3.657e^-4	0.825	INTERGENIC
3L	12133844	3L_12133844_SNP [dm3] 3L_12140744_SNP [dm6]	G	A	3.657e^-4	0.825	INTRON RhoGAP68F
X	21458725	X_21458725_SNP [dm3] X_21587698_SNP [dm6]	T	C	3.660e^-4	0.825	INTERGENIC
2R	12544954	2R_12544954_SNP [dm3] 2R_16657449_SNP [dm6]	G	C	3.665e^-4	0.825	INTRON Picot
2R	12077610	2R_12077610_SNP [dm3] 2R_16190105_SNP [dm6]	T	C	3.683e^-4	0.825	SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15090507	2L_15090507_SNP [dm3] 2L_15090507_SNP [dm6]	T	C	3.683e^-4	0.825	INTRON CG15270
2R	6924104	2R_6924104_SNP [dm3] 2R_11036599_SNP [dm6]	A	C	3.683e^-4	0.825	INTRON luna
2R	3079950	2R_3079950_SNP [dm3] 2R_7192445_SNP [dm6]	T	G	3.685e^-4	0.825	INTRON pk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	1124489	3R_1124489_SNP [dm3] 3R_5298767_SNP [dm6]	G	C	3.686e^-4	0.825	UTR_5_PRIME mtd INTRON mtd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_zfh1
3L	1108128	3L_1108128_SNP [dm3] 3L_1108128_SNP [dm6]	G	T	3.688e^-4	0.825	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	4945841	2R_4945841_SNP [dm3] 2R_9058336_SNP [dm6]	T	A	3.690e^-4	0.825	INTRON CG13743
3L	3819417	3L_3819417_SNP [dm3] 3L_3819417_SNP [dm6]	C	G	3.693e^-4	0.825	INTRON enc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	23564195	3R_23564195_SNP [dm3] 3R_27738473_SNP [dm6]	A	T	3.697e^-4	0.825	INTRON Ets98B
3R	3971798	3R_3971798_SNP [dm3] 3R_8146076_SNP [dm6]	T	G	3.707e^-4	0.825	INTERGENIC
X	12794530	X_12794530_SNP [dm3] X_12900497_SNP [dm6]	A	T	3.710e^-4	0.825	SYNONYMOUS_CODING CG32649 DOWNSTREAM CG4407	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	13624013	2L_13624013_SNP [dm3] 2L_13624013_SNP [dm6]	A	G	3.715e^-4	0.825	INTRON kuz
2L	19202987	2L_19202987_DEL [dm3] 2L_19202987_DEL [dm6]	GG	G	3.717e^-4	0.825	INTRON drl	regulatory region REDfly_CRMs
3R	16035457	3R_16035457_SNP [dm3] 3R_20209735_SNP [dm6]	G	T	3.718e^-4	0.825	UTR_5_PRIME CG17199 INTRON Nlg4
X	21948260	X_21948260_SNP [dm3] X_22546424_SNP [dm6]	A	T	3.719e^-4	0.825	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	14710843	3L_14710843_SNP [dm3] 3L_14717743_SNP [dm6]	T	A	3.726e^-4	0.825	INTRON ome
2L	18486561	2L_18486561_SNP [dm3] 2L_18486561_SNP [dm6]	T	G	3.726e^-4	0.825	INTRON CG10176	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18376134	2L_18376134_SNP [dm3] 2L_18376134_SNP [dm6]	C	A	3.731e^-4	0.825	INTRON Fas3	TF binding site mE1_TFBS_sbb
X	12795347	X_12795347_SNP [dm3] X_12901314_SNP [dm6]	A	T	3.737e^-4	0.825	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	11606282	3R_11606282_SNP [dm3] 3R_15780560_SNP [dm6]	A	G	3.740e^-4	0.825	SYNONYMOUS_CODING CG5614	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19598099	2L_19598099_SNP [dm3] 2L_19598099_SNP [dm6]	G	A	3.743e^-4	0.825	INTRON Lar
X	1174853	X_1174853_SNP [dm3] X_1280820_SNP [dm6]	A	G	3.743e^-4	0.825	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	62694	3L_62694_SNP [dm3] 3L_62694_SNP [dm6]	C	G	3.744e^-4	0.825	INTERGENIC
2R	8151058	2R_8151058_SNP [dm3] 2R_12263553_SNP [dm6]	G	A	3.748e^-4	0.825	UPSTREAM Cam INTRON Cam
3R	5878395	3R_5878395_SNP [dm3] 3R_10052673_SNP [dm6]	A	G	3.750e^-4	0.825	UPSTREAM Npc2e DOWNSTREAM CR44192 INTRON Fancl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12795333	X_12795333_DEL [dm3] X_12901300_DEL [dm6]	AC	A	3.761e^-4	0.825	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	12795340	X_12795340_DEL [dm3] X_12901307_DEL [dm6]	ACAACT	A	3.761e^-4	0.825	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	5300594	3L_5300594_SNP [dm3] 3L_5307494_SNP [dm6]	G	T	3.762e^-4	0.825	INTERGENIC
3L	14985464	3L_14985464_SNP [dm3] 3L_14992364_SNP [dm6]	C	T	3.765e^-4	0.825	UTR_5_PRIME Zip71B DOWNSTREAM mnd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	7327633	2L_7327633_SNP [dm3] 2L_7327633_SNP [dm6]	C	T	3.767e^-4	0.825	INTERGENIC
2L	5901184	2L_5901184_SNP [dm3] 2L_5901184_SNP [dm6]	G	T	3.767e^-4	0.825	UPSTREAM CR44579 INTERGENIC
2L	17292415	2L_17292415_DEL [dm3] 2L_17292415_DEL [dm6]	AGGTATGCCTGCTTCAAGTC...	A	3.768e^-4	0.825	UPSTREAM CG6380 INTERGENIC
X	14037482	X_14037482_SNP [dm3] X_14143449_SNP [dm6]	T	C	3.783e^-4	0.826	INTERGENIC
3L	11596396	3L_11596396_SNP [dm3] 3L_11603296_SNP [dm6]	A	G	3.800e^-4	0.826	INTRON CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21949938	X_21949938_SNP [dm3] X_22548102_SNP [dm6]	A	G	3.806e^-4	0.826	DOWNSTREAM CG17601 INTERGENIC
3L	16531687	3L_16531687_DEL [dm3] 3L_16538587_DEL [dm6]	TT	T	3.811e^-4	0.826	INTRON CG43373
2L	8642361	2L_8642361_INS [dm3] 2L_8642361_INS [dm6]	T	TA	3.813e^-4	0.826	INTRON Sema-1a
2R	18748993	2R_18748993_SNP [dm3] 2R_22861470_SNP [dm6]	G	A	3.816e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	3207502	2R_3207502_SNP [dm3] 2R_7319997_SNP [dm6]	C	T	3.821e^-4	0.826	UTR_3_PRIME Dscam1
3L	15688821	3L_15688821_SNP [dm3] 3L_15695721_SNP [dm6]	C	A	3.824e^-4	0.826	INTERGENIC
2R	14707915	2R_14707915_SNP [dm3] 2R_18820410_SNP [dm6]	G	C	3.831e^-4	0.826	SYNONYMOUS_CODING Phb2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14850551	3R_14850551_SNP [dm3] 3R_19024829_SNP [dm6]	C	T	3.831e^-4	0.826	UTR_3_PRIME CG14286 UPSTREAM CG6005 & 1 other
3L	2657251	3L_2657251_SNP [dm3] 3L_2657251_SNP [dm6]	C	T	3.833e^-4	0.826	UTR_3_PRIME Fife	TF binding site BDTNP1_TFBS_da
2R	4953988	2R_4953988_SNP [dm3] 2R_9066483_SNP [dm6]	T	C	3.834e^-4	0.826	INTRON ana	regulatory region REDfly_CRMs
2L	17250674	2L_17250674_SNP [dm3] 2L_17250674_SNP [dm6]	C	A	3.836e^-4	0.826	INTRON beat-IIIc	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2R	18775933	2R_18775933_SNP [dm3] 2R_22888410_SNP [dm6]	A	G	3.848e^-4	0.826	SPLICE_SITE_REGION Gmer UPSTREAM MED23 DOWNSTREAM asrij INTRON Gmer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	17250654	2L_17250654_SNP [dm3] 2L_17250654_SNP [dm6]	T	A	3.851e^-4	0.826	INTRON beat-IIIc	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2L	9089374	2L_9089374_SNP [dm3] 2L_9089374_SNP [dm6]	A	T	3.855e^-4	0.826	SYNONYMOUS_CODING Toll-4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2645611	3L_2645611_SNP [dm3] 3L_2645611_SNP [dm6]	C	A	3.861e^-4	0.826	INTRON CG1143	TF binding site mE1_TFBS_cad
3R	5878383	3R_5878383_SNP [dm3] 3R_10052661_SNP [dm6]	G	T	3.862e^-4	0.826	UPSTREAM Npc2e DOWNSTREAM CR44192 INTRON Fancl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2446208	3L_2446208_SNP [dm3] 3L_2446208_SNP [dm6]	C	G	3.866e^-4	0.826	INTRON CG45186	TF binding site mE1_TFBS_cad
X	16808615	X_16808615_SNP [dm3] X_16914582_SNP [dm6]	T	A	3.868e^-4	0.826	INTRON CG4928
2R	16632503	2R_16632503_SNP [dm3] 2R_20744998_SNP [dm6]	C	T	3.871e^-4	0.826	INTRON dpr
2L	3401943	2L_3401943_SNP [dm3] 2L_3401943_SNP [dm6]	T	C	3.872e^-4	0.826	INTERGENIC
2R	18769005	2R_18769005_SNP [dm3] 2R_22881482_SNP [dm6]	A	C	3.874e^-4	0.826	UTR_3_PRIME CG3501 DOWNSTREAM PIP5K59B	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
3R	10900716	3R_10900716_SNP [dm3] 3R_15074994_SNP [dm6]	G	T	3.882e^-4	0.827	INTRON dpr9
3R	18745828	3R_18745828_SNP [dm3] 3R_22920106_SNP [dm6]	T	G	3.894e^-4	0.828	INTRON klg
2L	12415091	2L_12415091_SNP [dm3] 2L_12415091_SNP [dm6]	A	G	3.902e^-4	0.828	INTRON vir-1
3R	13810039	3R_13810039_SNP [dm3] 3R_17984317_SNP [dm6]	T	G	3.903e^-4	0.828	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21900094	3R_21900094_SNP [dm3] 3R_26074372_SNP [dm6]	T	A	3.905e^-4	0.828	INTERGENIC
X	4475044	X_4475044_SNP [dm3] X_4581011_SNP [dm6]	G	A	3.907e^-4	0.828	INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18475339	2R_18475339_SNP [dm3] 2R_22587834_SNP [dm6]	A	C	3.917e^-4	0.828	INTRON dnr1
2R	18475340	2R_18475340_SNP [dm3] 2R_22587835_SNP [dm6]	G	A	3.917e^-4	0.828	INTRON dnr1
3R	15150774	3R_15150774_SNP [dm3] 3R_19325052_SNP [dm6]	T	A	3.927e^-4	0.829	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	19871890	X_19871890_SNP [dm3] X_19977857_SNP [dm6]	C	T	3.934e^-4	0.83	INTERGENIC
2R	2935611	2R_2935611_SNP [dm3] 2R_7048106_SNP [dm6]	T	G	3.943e^-4	0.83	NON_SYNONYMOUS_CODING Tsp42El
3R	26864084	3R_26864084_SNP [dm3] 3R_31038362_SNP [dm6]	T	C	3.945e^-4	0.83	INTERGENIC
2L	2928184	2L_2928184_SNP [dm3] 2L_2928184_SNP [dm6]	T	C	3.951e^-4	0.83	INTRON lilli
X	11409403	X_11409403_SNP [dm3] X_11515370_SNP [dm6]	A	T	3.973e^-4	0.832	INTRON Drak	TF binding site mE1_TFBS_Kr
3R	12765329	3R_12765329_SNP [dm3] 3R_16939607_SNP [dm6]	G	A	3.973e^-4	0.832	INTRON Abd-B	TF binding site mE1_TFBS_cad
2L	376777	2L_376777_SNP [dm3] 2L_376777_SNP [dm6]	G	A	3.975e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	18748553	2R_18748553_SNP [dm3] 2R_22861030_SNP [dm6]	C	A	3.977e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	2922161	2L_2922161_SNP [dm3] 2L_2922161_SNP [dm6]	T	A	3.983e^-4	0.833	INTRON lilli
X	8825319	X_8825319_SNP [dm3] X_8931286_SNP [dm6]	G	A	3.989e^-4	0.833	INTRON rdgA	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12661146	2L_12661146_SNP [dm3] 2L_12661146_SNP [dm6]	C	G	3.997e^-4	0.833	INTRON pdm2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	12212097	2R_12212097_SNP [dm3] 2R_16324592_SNP [dm6]	C	T	4.000e^-4	0.833	UTR_3_PRIME CG4282 DOWNSTREAM Vha44
2R	18769854	2R_18769854_SNP [dm3] 2R_22882331_SNP [dm6]	A	G	4.006e^-4	0.833	DOWNSTREAM PIP5K59B & 1 other INTRON CG3501	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8861284	2R_8861284_SNP [dm3] 2R_12973779_SNP [dm6]	G	A	4.007e^-4	0.833	INTRON Psc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2996239	3L_2996239_SNP [dm3] 3L_2996239_SNP [dm6]	A	G	4.011e^-4	0.833	DOWNSTREAM CG2113 INTERGENIC
3L	14066774	3L_14066774_SNP [dm3] 3L_14073674_SNP [dm6]	T	A	4.022e^-4	0.834	SYNONYMOUS_CODING Pex1	TF binding site mE1_TFBS_sens
2R	14932148	2R_14932148_DEL [dm3] 2R_19044643_DEL [dm6]	AA	A	4.026e^-4	0.834	INTERGENIC
2R	4654281	2R_4654281_SNP [dm3] 2R_8766776_SNP [dm6]	C	A	4.032e^-4	0.834	INTERGENIC
3R	25323777	3R_25323777_SNP [dm3] 3R_29498055_SNP [dm6]	A	G	4.041e^-4	0.835	DOWNSTREAM Trc8 INTRON CG2010	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	16202369	3L_16202369_SNP [dm3] 3L_16209269_SNP [dm6]	G	A	4.044e^-4	0.835	INTERGENIC	TF binding site mE1_TFBS_cad
2R	11724954	2R_11724954_SNP [dm3] 2R_15837449_SNP [dm6]	A	G	4.055e^-4	0.835	INTRON tun	regulatory region REDfly_CRMs
2L	7582864	2L_7582864_SNP [dm3] 2L_7582864_SNP [dm6]	T	A	4.059e^-4	0.835	INTRON Spn28B
2L	9011824	2L_9011824_SNP [dm3] 2L_9011824_SNP [dm6]	C	A	4.060e^-4	0.835	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
3L	458775	3L_458775_SNP [dm3] 3L_458775_SNP [dm6]	C	A	4.067e^-4	0.836	INTRON klar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17863455	3R_17863455_SNP [dm3] 3R_22037733_SNP [dm6]	G	T	4.072e^-4	0.836	SYNONYMOUS_CODING pit	TF binding site mE1_TFBS_sens
X	11728712	X_11728712_SNP [dm3] X_11834679_SNP [dm6]	C	A	4.077e^-4	0.836	DOWNSTREAM rudhira INTRON rudhira	TF binding site mE1_TFBS_cad
3R	3965610	3R_3965610_SNP [dm3] 3R_8139888_SNP [dm6]	T	C	4.083e^-4	0.836	UPSTREAM tRNA:N5:84F DOWNSTREAM tRNA:R2:84Fe & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	21948241	X_21948241_DEL [dm3] X_22546405_DEL [dm6]	TCAGAAAATATATGA...	T	4.089e^-4	0.837	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	9287766	X_9287766_SNP [dm3] X_9393733_SNP [dm6]	T	C	4.104e^-4	0.838	INTRON mgl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	13739800	2R_13739800_SNP [dm3] 2R_17852295_SNP [dm6]	G	T	4.104e^-4	0.838	UPSTREAM CG30323 INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2016127	3L_2016127_DEL [dm3] 3L_2016127_DEL [dm6]	GTTCTACTCATAATTCAGGA...	G	4.113e^-4	0.839	INTERGENIC
3R	25758785	3R_25758785_SNP [dm3] 3R_29933063_SNP [dm6]	T	C	4.125e^-4	0.839	UPSTREAM CG42557 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	25763023	3R_25763023_SNP [dm3] 3R_29937301_SNP [dm6]	G	A	4.125e^-4	0.839	SYNONYMOUS_CODING CG15523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19028840	2R_19028840_INS [dm3] 2R_23141317_INS [dm6]	T	TCCAT	4.131e^-4	0.839	UPSTREAM CG13544 & 1 other INTERGENIC
2L	13903135	2L_13903135_SNP [dm3] 2L_13903135_SNP [dm6]	C	T	4.135e^-4	0.839	SYNONYMOUS_CODING Smg5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	12077068	3R_12077068_SNP [dm3] 3R_16251346_SNP [dm6]	G	A	4.144e^-4	0.839	INTRON tara	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	5121979	3R_5121979_SNP [dm3] 3R_9296257_SNP [dm6]	T	G	4.151e^-4	0.839	INTRON CG8861
3R	8353659	3R_8353659_SNP [dm3] 3R_12527937_SNP [dm6]	C	A	4.156e^-4	0.839	NON_SYNONYMOUS_CODING Hug INTRON Octbeta3R
2L	17322634	2L_17322634_INS [dm3] 2L_17322634_INS [dm6]	C	CC	4.157e^-4	0.839	INTERGENIC
3R	9297592	3R_9297592_SNP [dm3] 3R_13471870_SNP [dm6]	T	C	4.161e^-4	0.839	INTERGENIC
3L	4541416	3L_4541416_SNP [dm3] 3L_4541416_SNP [dm6]	G	A	4.161e^-4	0.839	UPSTREAM CG11357 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	8981453	3L_8981453_SNP [dm3] 3L_8988353_SNP [dm6]	T	C	4.162e^-4	0.839	DOWNSTREAM CG5280 INTRON CG5068
X	21947679	X_21947679_SNP [dm3] X_22545843_SNP [dm6]	A	T	4.167e^-4	0.839	INTERGENIC
X	16698678	X_16698678_SNP [dm3] X_16804645_SNP [dm6]	G	A	4.172e^-4	0.839	NON_SYNONYMOUS_CODING CG13005	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3377694	X_3377694_SNP [dm3] X_3483661_SNP [dm6]	G	A	4.179e^-4	0.839	SYNONYMOUS_CODING CG10802 DOWNSTREAM CG14270 INTRON CR44999	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	19480177	2L_19480177_SNP [dm3] 2L_19480177_SNP [dm6]	A	G	4.182e^-4	0.839	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	19424864	3R_19424864_SNP [dm3] 3R_23599142_SNP [dm6]	T	C	4.190e^-4	0.839	UPSTREAM CG10183 INTERGENIC
3L	2651764	3L_2651764_SNP [dm3] 3L_2651764_SNP [dm6]	G	T	4.194e^-4	0.839	UTR_5_PRIME Aats-pro UPSTREAM Snup & 1 other
2R	17712021	2R_17712021_SNP [dm3] 2R_21824516_SNP [dm6]	G	C	4.196e^-4	0.839	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18810263	2R_18810263_SNP [dm3] 2R_22922740_SNP [dm6]	C	T	4.197e^-4	0.839	SYNONYMOUS_CODING Nup214
2R	12696827	2R_12696827_SNP [dm3] 2R_16809322_SNP [dm6]	C	A	4.205e^-4	0.84	INTERGENIC
2L	19908439	2L_19908439_SNP [dm3] 2L_19908439_SNP [dm6]	G	C	4.217e^-4	0.84	INTRON sick
3L	7470072	3L_7470072_SNP [dm3] 3L_7476972_SNP [dm6]	T	A	4.221e^-4	0.84	DOWNSTREAM CG43292 INTERGENIC
3R	5895860	3R_5895860_SNP [dm3] 3R_10070138_SNP [dm6]	C	G	4.224e^-4	0.84	UPSTREAM nerfin-2 INTERGENIC
3R	25734957	3R_25734957_SNP [dm3] 3R_29909235_SNP [dm6]	G	C	4.229e^-4	0.84	SYNONYMOUS_CODING CG31036
2L	22139117	2L_22139117_SNP [dm3] 2L_22139117_SNP [dm6]	A	G	4.230e^-4	0.84	INTRON CG42748	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	21944889	X_21944889_SNP [dm3] X_22543053_SNP [dm6]	T	C	4.241e^-4	0.841	NON_SYNONYMOUS_CODING CG17599	TF binding site mE1_TFBS_HSA
2R	13772991	2R_13772991_SNP [dm3] 2R_17885486_SNP [dm6]	C	T	4.245e^-4	0.841	INTRON Elk
2L	4289940	2L_4289940_SNP [dm3] 2L_4289940_SNP [dm6]	C	A	4.263e^-4	0.842	INTRON tutl
2L	19230797	2L_19230797_SNP [dm3] 2L_19230797_SNP [dm6]	T	C	4.271e^-4	0.842	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	10382797	2R_10382797_SNP [dm3] 2R_14495292_SNP [dm6]	A	G	4.279e^-4	0.842	SYNONYMOUS_CODING L	TF binding site mE1_TFBS_cad
2R	17678103	2R_17678103_SNP [dm3] 2R_21790598_SNP [dm6]	C	T	4.280e^-4	0.842	NON_SYNONYMOUS_CODING lox2
3R	14623556	3R_14623556_SNP [dm3] 3R_18797834_SNP [dm6]	G	A	4.289e^-4	0.842	INTERGENIC
3R	14606267	3R_14606267_SNP [dm3] 3R_18780545_SNP [dm6]	A	T	4.296e^-4	0.842	UPSTREAM CG7720 INTRON CG7720	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18009374	2R_18009374_SNP [dm3] 2R_22121869_SNP [dm6]	A	G	4.298e^-4	0.842	UPSTREAM mei-S332 INTRON Vrp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8702799	2L_8702799_SNP [dm3] 2L_8702799_SNP [dm6]	A	G	4.306e^-4	0.842	UPSTREAM CR44992 INTRON Hnf4	TF binding site BDTNP1_TFBS_twi
3R	25758730	3R_25758730_SNP [dm3] 3R_29933008_SNP [dm6]	C	G	4.308e^-4	0.842	SYNONYMOUS_CODING Cog7 UPSTREAM CG42557 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	14394891	2L_14394891_SNP [dm3] 2L_14394891_SNP [dm6]	C	T	4.309e^-4	0.842	INTRON elB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18793837	3R_18793837_SNP [dm3] 3R_22968115_SNP [dm6]	G	C	4.324e^-4	0.842	DOWNSTREAM Tpl94D INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19495062	3L_19495062_SNP [dm3] 3L_19501962_SNP [dm6]	T	A	4.325e^-4	0.842	SYNONYMOUS_CODING CG9452
3L	9686786	3L_9686786_SNP [dm3] 3L_9693686_SNP [dm6]	C	T	4.332e^-4	0.842	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	9690515	3L_9690515_SNP [dm3] 3L_9697415_SNP [dm6]	T	A	4.335e^-4	0.842	UPSTREAM CG6767 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	5079404	2R_5079404_SNP [dm3] 2R_9191899_SNP [dm6]	C	T	4.338e^-4	0.842	UTR_5_PRIME CG8026 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	14905152	3L_14905152_SNP [dm3] 3L_14912052_SNP [dm6]	C	T	4.338e^-4	0.842	INTRON DCX-EMAP
3L	10156948	3L_10156948_SNP [dm3] 3L_10163848_SNP [dm6]	G	A	4.341e^-4	0.842	INTRON dpr10
2R	8132346	2R_8132346_SNP [dm3] 2R_12244841_SNP [dm6]	C	T	4.345e^-4	0.842	UPSTREAM CG43244 INTERGENIC
X	12273737	X_12273737_SNP [dm3] X_12379704_SNP [dm6]	G	A	4.345e^-4	0.842	INTERGENIC
2R	13687746	2R_13687746_SNP [dm3] 2R_17800241_SNP [dm6]	A	C	4.346e^-4	0.842	UTR_3_PRIME Dhit UPSTREAM grh DOWNSTREAM CR45270	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10544277	2R_10544277_SNP [dm3] 2R_14656772_SNP [dm6]	C	T	4.348e^-4	0.842	DOWNSTREAM Adgf-E INTERGENIC
2L	16135324	2L_16135324_DEL [dm3] 2L_16135324_DEL [dm6]	GG	G	4.349e^-4	0.842	UPSTREAM CG34168 DOWNSTREAM CR44871 & 1 other INTERGENIC
2L	20860404	2L_20860404_SNP [dm3] 2L_20860404_SNP [dm6]	C	T	4.383e^-4	0.843	INTRON CG9336
2R	17034063	2R_17034063_SNP [dm3] 2R_21146558_SNP [dm6]	C	T	4.389e^-4	0.843	SYNONYMOUS_CODING Hmg-2 DOWNSTREAM Xbp1 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	2651851	3L_2651851_SNP [dm3] 3L_2651851_SNP [dm6]	G	A	4.392e^-4	0.843	UPSTREAM Snup & 2 others INTERGENIC
3L	2645067	3L_2645067_SNP [dm3] 3L_2645067_SNP [dm6]	C	T	4.395e^-4	0.843	UPSTREAM CG1143 INTERGENIC
3L	1570824	3L_1570824_SNP [dm3] 3L_1570824_SNP [dm6]	T	C	4.403e^-4	0.843	INTRON CG12004	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	19217493	2L_19217493_SNP [dm3] 2L_19217493_SNP [dm6]	T	C	4.414e^-4	0.843	EXON CR44189	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_sens
2L	18902493	2L_18902493_SNP [dm3] 2L_18902493_SNP [dm6]	G	A	4.417e^-4	0.843	INTERGENIC
3L	4842259	3L_4842259_SNP [dm3] 3L_4842259_SNP [dm6]	T	C	4.424e^-4	0.843	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	2249196	2L_2249196_SNP [dm3] 2L_2249196_SNP [dm6]	A	T	4.425e^-4	0.843	INTERGENIC
3R	10618315	3R_10618315_DEL [dm3] 3R_14792593_DEL [dm6]	AA	A	4.425e^-4	0.843	UTR_3_PRIME jvl INTRON jvl
3R	14040363	3R_14040363_SNP [dm3] 3R_18214641_SNP [dm6]	T	C	4.434e^-4	0.843	INTRON CG7985	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20316757	2R_20316757_SNP [dm3] 2R_24429234_SNP [dm6]	A	G	4.434e^-4	0.843	UPSTREAM prom DOWNSTREAM CG15873 INTERGENIC
3R	10667213	3R_10667213_SNP [dm3] 3R_14841491_SNP [dm6]	C	G	4.451e^-4	0.843	INTRON btsz
2L	510296	2L_510296_SNP [dm3] 2L_510296_SNP [dm6]	C	G	4.463e^-4	0.843	INTRON ush	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Trl
X	21946828	X_21946828_SNP [dm3] X_22544992_SNP [dm6]	A	G	4.469e^-4	0.843	UPSTREAM CG17599 INTERGENIC
X	20534352	X_20534352_SNP [dm3] X_20663325_SNP [dm6]	T	G	4.472e^-4	0.843	INTRON CG1835	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	14296654	3L_14296654_SNP [dm3] 3L_14303554_SNP [dm6]	T	A	4.477e^-4	0.843	INTRON fz
2R	10998641	2R_10998641_SNP [dm3] 2R_15111136_SNP [dm6]	A	C	4.481e^-4	0.843	INTERGENIC
3L	9735039	3L_9735039_SNP [dm3] 3L_9741939_SNP [dm6]	A	T	4.482e^-4	0.843	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15734019	3R_15734019_SNP [dm3] 3R_19908297_SNP [dm6]	G	A	4.488e^-4	0.843	DOWNSTREAM CR45048 & 1 other INTRON RhoGAP92B	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	13483941	3R_13483941_SNP [dm3] 3R_17658219_SNP [dm6]	T	A	4.490e^-4	0.843	DOWNSTREAM tRNA:CR31575 INTRON CG14322
3L	5299744	3L_5299744_SNP [dm3] 3L_5306644_SNP [dm6]	A	T	4.493e^-4	0.843	INTERGENIC
2R	10998606	2R_10998606_SNP [dm3] 2R_15111101_SNP [dm6]	A	C	4.493e^-4	0.843	INTERGENIC
3L	14293527	3L_14293527_SNP [dm3] 3L_14300427_SNP [dm6]	G	A	4.505e^-4	0.843	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	1174752	X_1174752_SNP [dm3] X_1280719_SNP [dm6]	T	G	4.536e^-4	0.843	INTERGENIC
3R	13094958	3R_13094958_SNP [dm3] 3R_17269236_SNP [dm6]	C	T	4.537e^-4	0.843	INTERGENIC
X	15413680	X_15413680_SNP [dm3] X_15519647_SNP [dm6]	A	G	4.543e^-4	0.843	INTRON Ac13E
3L	13483153	3L_13483153_SNP [dm3] 3L_13490053_SNP [dm6]	A	C	4.554e^-4	0.843	INTRON Tgi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3L	2608904	3L_2608904_SNP [dm3] 3L_2608904_SNP [dm6]	T	C	4.562e^-4	0.843	DOWNSTREAM Pxn INTRON Pxn
3R	14646225	3R_14646225_INS [dm3] 3R_18820503_INS [dm6]	C	CACTCTTAAAACACTTTTC...	4.563e^-4	0.843	INTRON CG18208
X	14182626	X_14182626_SNP [dm3] X_14288593_SNP [dm6]	G	A	4.574e^-4	0.843	DOWNSTREAM Muc12Ea INTRON CG9400
X	2690048	X_2690048_SNP [dm3] X_2796015_SNP [dm6]	A	C	4.577e^-4	0.843	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.490e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.02551
In_3R_Mo	0.05010

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	7.9483	0.0188
In_3R_Mo	7.5412	0.023

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1930 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	13570329	3R_13570329_SNP [dm3] 3R_17744607_SNP [dm6]	A	C	1.631e^-7	0.306	INTRON TyrRII	TF binding site mE1_TFBS_cad
3L	412023	3L_412023_SNP [dm3] 3L_412023_SNP [dm6]	G	T	1.215e^-6	0.856	INTERGENIC
3L	411991	3L_411991_SNP [dm3] 3L_411991_SNP [dm6]	A	T	2.561e^-6	0.856	INTERGENIC
3L	3680402	3L_3680402_SNP [dm3] 3L_3680402_SNP [dm6]	T	C	3.860e^-6	0.856	INTERGENIC
2R	19007092	2R_19007092_SNP [dm3] 2R_23119569_SNP [dm6]	G	T	4.121e^-6	0.856	INTERGENIC
2R	7961237	2R_7961237_SNP [dm3] 2R_12073732_SNP [dm6]	G	A	4.250e^-6	0.856	INTRON CG8888
2L	17387254	2L_17387254_SNP [dm3] 2L_17387254_SNP [dm6]	T	C	4.268e^-6	0.856	INTRON CLIP-190
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	4.622e^-6	0.856	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13570318	3R_13570318_SNP [dm3] 3R_17744596_SNP [dm6]	C	A	5.201e^-6	0.856	INTRON TyrRII	TF binding site mE1_TFBS_cad
3R	13570405	3R_13570405_SNP [dm3] 3R_17744683_SNP [dm6]	A	C	6.180e^-6	0.856	INTRON TyrRII
2R	7961258	2R_7961258_SNP [dm3] 2R_12073753_SNP [dm6]	A	G	6.892e^-6	0.856	INTRON CG8888
2R	12821148	2R_12821148_SNP [dm3] 2R_16933643_SNP [dm6]	C	T	7.181e^-6	0.856	INTRON Pkc53E	TF binding site BDTNP1_TFBS_twi
2R	13415564	2R_13415564_SNP [dm3] 2R_17528059_SNP [dm6]	G	A	7.456e^-6	0.856	SYNONYMOUS_CODING Patronin
3L	14057292	3L_14057292_SNP [dm3] 3L_14064192_SNP [dm6]	C	T	7.672e^-6	0.856	INTRON CG32138	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	3022256	3L_3022256_SNP [dm3] 3L_3022256_SNP [dm6]	G	A	8.913e^-6	0.856	INTERGENIC
3R	15154147	3R_15154147_SNP [dm3] 3R_19328425_SNP [dm6]	T	C	9.737e^-6	0.856	UPSTREAM CR44175 INTERGENIC
3L	3090995	3L_3090995_SNP [dm3] 3L_3090995_SNP [dm6]	C	T	1.022e^-5	0.856	UTR_3_PRIME Cht7 DOWNSTREAM CG11486 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	13415561	2R_13415561_SNP [dm3] 2R_17528056_SNP [dm6]	A	G	1.083e^-5	0.856	SYNONYMOUS_CODING Patronin
3R	8409015	3R_8409015_SNP [dm3] 3R_12583293_SNP [dm6]	T	G	1.194e^-5	0.856	INTRON Octbeta2R
3L	16983394	3L_16983394_SNP [dm3] 3L_16990294_SNP [dm6]	C	A	1.341e^-5	0.856	INTRON Exn
3R	15154191	3R_15154191_SNP [dm3] 3R_19328469_SNP [dm6]	T	A	1.405e^-5	0.856	UPSTREAM CR44175 INTERGENIC
2R	12696827	2R_12696827_SNP [dm3] 2R_16809322_SNP [dm6]	C	A	1.415e^-5	0.856	INTERGENIC
2R	11251263	2R_11251263_SNP [dm3] 2R_15363758_SNP [dm6]	T	A	1.465e^-5	0.856	INTRON unc-5
3L	412168	3L_412168_SNP [dm3] 3L_412168_SNP [dm6]	G	A	1.610e^-5	0.856	INTERGENIC
2R	15697740	2R_15697740_SNP [dm3] 2R_19810235_SNP [dm6]	T	G	1.613e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	19806727	3R_19806727_INS [dm3] 3R_23981005_INS [dm6]	A	AGTAAAAACTTAAA...	1.630e^-5	0.856	DOWNSTREAM CG31140 INTRON CG31140
2R	12282058	2R_12282058_SNP [dm3] 2R_16394553_SNP [dm6]	G	A	1.737e^-5	0.856	INTRON Sema-2b
3R	3966032	3R_3966032_SNP [dm3] 3R_8140310_SNP [dm6]	G	A	1.741e^-5	0.856	UPSTREAM tRNA:N5:84F & 2 others DOWNSTREAM tRNA:R2:84Fc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	12795209	X_12795209_SNP [dm3] X_12901176_SNP [dm6]	G	T	1.762e^-5	0.856	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	2644981	3L_2644981_SNP [dm3] 3L_2644981_SNP [dm6]	A	T	1.789e^-5	0.856	UPSTREAM CG1143 INTERGENIC
2L	19233529	2L_19233529_SNP [dm3] 2L_19233529_SNP [dm6]	A	G	1.910e^-5	0.856	INTERGENIC
3R	15154149	3R_15154149_SNP [dm3] 3R_19328427_SNP [dm6]	A	T	1.965e^-5	0.856	UPSTREAM CR44175 INTERGENIC
2R	13950559	2R_13950559_SNP [dm3] 2R_18063054_SNP [dm6]	A	T	1.975e^-5	0.856	INTRON CG34386
3L	16983298	3L_16983298_INS [dm3] 3L_16990198_INS [dm6]	A	AG	2.024e^-5	0.856	INTRON Exn
3L	10293470	3L_10293470_SNP [dm3] 3L_10300370_SNP [dm6]	A	C	2.272e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	3156248	3R_3156248_SNP [dm3] 3R_7330526_SNP [dm6]	A	T	2.370e^-5	0.856	UPSTREAM CR44337 INTERGENIC
2L	17387283	2L_17387283_SNP [dm3] 2L_17387283_SNP [dm6]	T	A	2.371e^-5	0.856	INTRON CLIP-190
3L	9661340	3L_9661340_SNP [dm3] 3L_9668240_SNP [dm6]	C	G	2.392e^-5	0.856	INTRON fry	TF binding site mE1_TFBS_cad
X	12795357	X_12795357_SNP [dm3] X_12901324_SNP [dm6]	A	C	2.473e^-5	0.856	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	14850529	3R_14850529_SNP [dm3] 3R_19024807_SNP [dm6]	A	C	2.474e^-5	0.856	UTR_3_PRIME CG14286 UPSTREAM CG6005 & 1 other	TF binding site mE1_TFBS_cad
3R	8408860	3R_8408860_SNP [dm3] 3R_12583138_SNP [dm6]	C	A	2.512e^-5	0.856	INTRON Octbeta2R
X	9570940	X_9570940_SNP [dm3] X_9676907_SNP [dm6]	C	T	2.605e^-5	0.856	SYNONYMOUS_CODING nej	TF binding site mE1_TFBS_sens
3L	412160	3L_412160_INS [dm3] 3L_412160_INS [dm6]	A	AAATACACATA...	2.617e^-5	0.856	INTERGENIC
2R	13238252	2R_13238252_SNP [dm3] 2R_17350747_SNP [dm6]	A	C	2.763e^-5	0.856	INTRON mbl
3R	14660016	3R_14660016_SNP [dm3] 3R_18834294_SNP [dm6]	G	A	2.810e^-5	0.856	INTRON CG18208
3L	9661317	3L_9661317_SNP [dm3] 3L_9668217_SNP [dm6]	A	G	2.829e^-5	0.856	INTRON fry	TF binding site mE1_TFBS_cad
2L	10636889	2L_10636889_SNP [dm3] 2L_10636889_SNP [dm6]	C	T	2.878e^-5	0.856	INTRON CG7329
X	9508220	X_9508220_DEL [dm3] X_9614187_DEL [dm6]	CGATCTTGGGGC...	C	2.999e^-5	0.856	INTRON CG42797
X	19239433	X_19239433_SNP [dm3] X_19345400_SNP [dm6]	T	A	3.167e^-5	0.856	INTRON nAChRalpha7
2L	17315218	2L_17315218_SNP [dm3] 2L_17315218_SNP [dm6]	T	C	3.173e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	2645067	3L_2645067_SNP [dm3] 3L_2645067_SNP [dm6]	C	T	3.181e^-5	0.856	UPSTREAM CG1143 INTERGENIC
X	3381344	X_3381344_SNP [dm3] X_3487311_SNP [dm6]	T	C	3.245e^-5	0.856	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_sens
3L	11650616	3L_11650616_SNP [dm3] 3L_11657516_SNP [dm6]	C	T	3.261e^-5	0.856	DOWNSTREAM mir-274 INTRON CG32085
2L	19244843	2L_19244843_SNP [dm3] 2L_19244843_SNP [dm6]	C	A	3.276e^-5	0.856	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	12146645	3L_12146645_SNP [dm3] 3L_12153545_SNP [dm6]	T	C	3.304e^-5	0.856	SYNONYMOUS_CODING Nrx-IV
3R	6253276	3R_6253276_SNP [dm3] 3R_10427554_SNP [dm6]	G	A	3.345e^-5	0.856	INTERGENIC
3L	3095963	3L_3095963_SNP [dm3] 3L_3095963_SNP [dm6]	A	G	3.453e^-5	0.856	UPSTREAM tRNA:CR32289 & 2 others DOWNSTREAM tRNA:CR32288 & 1 other INTRON Cht7	TF binding site BDTNP1_TFBS_dl
3R	14850563	3R_14850563_SNP [dm3] 3R_19024841_SNP [dm6]	T	A	3.513e^-5	0.856	UTR_3_PRIME CG14286 UPSTREAM CG6005 & 1 other
2R	12400793	2R_12400793_SNP [dm3] 2R_16513288_SNP [dm6]	C	G	3.536e^-5	0.856	INTRON Sema-2a
3L	2644985	3L_2644985_SNP [dm3] 3L_2644985_SNP [dm6]	T	A	3.547e^-5	0.856	UPSTREAM CG1143 INTERGENIC
3R	13570372	3R_13570372_SNP [dm3] 3R_17744650_SNP [dm6]	C	A	3.558e^-5	0.856	INTRON TyrRII	TF binding site mE1_TFBS_cad
X	12795198	X_12795198_SNP [dm3] X_12901165_SNP [dm6]	G	A	3.576e^-5	0.856	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	12795293	X_12795293_SNP [dm3] X_12901260_SNP [dm6]	C	A	3.697e^-5	0.856	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	13139061	3R_13139061_SNP [dm3] 3R_17313339_SNP [dm6]	G	T	3.701e^-5	0.856	INTERGENIC
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	3.757e^-5	0.856	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
3L	3315081	3L_3315081_SNP [dm3] 3L_3315081_SNP [dm6]	T	C	3.767e^-5	0.856	SYNONYMOUS_CODING Drsl3 UPSTREAM Drsl4 DOWNSTREAM Drsl2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12795292	X_12795292_SNP [dm3] X_12901259_SNP [dm6]	T	C	3.899e^-5	0.856	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	12795289	X_12795289_SNP [dm3] X_12901256_SNP [dm6]	G	A	3.911e^-5	0.856	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	3203795	3R_3203795_SNP [dm3] 3R_7378073_SNP [dm6]	C	A	3.960e^-5	0.856	INTERGENIC
X	12264143	X_12264143_SNP [dm3] X_12370110_SNP [dm6]	C	A	3.978e^-5	0.856	INTERGENIC
3L	465002	3L_465002_SNP [dm3] 3L_465002_SNP [dm6]	A	G	4.058e^-5	0.856	INTRON klar
3R	4341488	3R_4341488_SNP [dm3] 3R_8515766_SNP [dm6]	G	A	4.169e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	3413588	3R_3413588_SNP [dm3] 3R_7587866_SNP [dm6]	A	G	4.271e^-5	0.856	INTRON CG34127	TF binding site mE1_TFBS_inv
3L	14560642	3L_14560642_SNP [dm3] 3L_14567542_SNP [dm6]	C	A	4.386e^-5	0.856	INTRON CG42758
2R	11330161	2R_11330161_SNP [dm3] 2R_15442656_SNP [dm6]	G	A	4.399e^-5	0.856	INTRON CG43729
3L	1408391	3L_1408391_SNP [dm3] 3L_1408391_SNP [dm6]	T	C	4.405e^-5	0.856	INTRON Ptp61F
2R	11907181	2R_11907181_SNP [dm3] 2R_16019676_SNP [dm6]	A	G	4.405e^-5	0.856	INTRON CG8399
3L	18663595	3L_18663595_SNP [dm3] 3L_18670495_SNP [dm6]	T	C	4.432e^-5	0.856	SYNONYMOUS_CODING Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	7047126	2L_7047126_SNP [dm3] 2L_7047126_SNP [dm6]	A	C	4.433e^-5	0.856	SYNONYMOUS_CODING milt INTRON milt
X	19871890	X_19871890_SNP [dm3] X_19977857_SNP [dm6]	C	T	4.435e^-5	0.856	INTERGENIC
3R	15340648	3R_15340648_SNP [dm3] 3R_19514926_SNP [dm6]	G	A	4.639e^-5	0.856	INTRON Dys
3L	3095899	3L_3095899_SNP [dm3] 3L_3095899_SNP [dm6]	A	T	4.668e^-5	0.856	UPSTREAM tRNA:CR32289 & 2 others DOWNSTREAM tRNA:CR32288 & 1 other INTRON Cht7	TF binding site BDTNP1_TFBS_dl
3L	3095912	3L_3095912_SNP [dm3] 3L_3095912_SNP [dm6]	G	T	4.668e^-5	0.856	UPSTREAM tRNA:CR32289 & 2 others DOWNSTREAM tRNA:CR32288 & 1 other INTRON Cht7	TF binding site BDTNP1_TFBS_dl
3L	3095977	3L_3095977_SNP [dm3] 3L_3095977_SNP [dm6]	A	T	4.668e^-5	0.856	UPSTREAM tRNA:CR32289 & 2 others DOWNSTREAM tRNA:CR32288 & 1 other INTRON Cht7	TF binding site BDTNP1_TFBS_dl
2R	9424104	2R_9424104_SNP [dm3] 2R_13536599_SNP [dm6]	A	G	4.690e^-5	0.856	UPSTREAM tRNA:K2:50C DOWNSTREAM CG6145 INTERGENIC
2R	6461401	2R_6461401_INS [dm3] 2R_10573896_INS [dm6]	T	TT	4.817e^-5	0.856	INTRON psq
2L	1931534	2L_1931534_SNP [dm3] 2L_1931534_SNP [dm6]	A	G	4.819e^-5	0.856	INTRON CG7337
2R	6844362	2R_6844362_SNP [dm3] 2R_10956857_SNP [dm6]	G	T	4.899e^-5	0.856	INTERGENIC
2R	13237688	2R_13237688_SNP [dm3] 2R_17350183_SNP [dm6]	T	C	4.945e^-5	0.856	INTRON mbl
3R	8390929	3R_8390929_SNP [dm3] 3R_12565207_SNP [dm6]	T	C	4.993e^-5	0.856	INTRON Octbeta2R
3L	3966428	3L_3966428_SNP [dm3] 3L_3966428_SNP [dm6]	C	A	4.999e^-5	0.856	INTERGENIC
X	12795213	X_12795213_SNP [dm3] X_12901180_SNP [dm6]	C	T	5.007e^-5	0.856	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	7209233	2L_7209233_SNP [dm3] 2L_7209233_SNP [dm6]	T	G	5.065e^-5	0.856	INTRON CG13784
X	2926734	X_2926734_SNP [dm3] X_3032701_SNP [dm6]	C	A	5.096e^-5	0.856	INTRON kirre
3R	12514886	3R_12514886_SNP [dm3] 3R_16689164_SNP [dm6]	A	C	5.193e^-5	0.856	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15154301	3R_15154301_SNP [dm3] 3R_19328579_SNP [dm6]	A	G	5.232e^-5	0.856	INTERGENIC
2R	7961037	2R_7961037_SNP [dm3] 2R_12073532_SNP [dm6]	G	A	5.296e^-5	0.856	INTRON CG8888
3R	10651842	3R_10651842_SNP [dm3] 3R_14826120_SNP [dm6]	A	C	5.317e^-5	0.856	NON_SYNONYMOUS_CODING btsz
2R	17786779	2R_17786779_SNP [dm3] 2R_21899274_SNP [dm6]	T	C	5.331e^-5	0.856	INTRON Fili
X	16442154	X_16442154_SNP [dm3] X_16548121_SNP [dm6]	A	C	5.503e^-5	0.856	UPSTREAM CG9902 DOWNSTREAM Arp2 INTERGENIC	transposable element FlyBase
X	12795333	X_12795333_DEL [dm3] X_12901300_DEL [dm6]	AC	A	5.510e^-5	0.856	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	12795340	X_12795340_DEL [dm3] X_12901307_DEL [dm6]	ACAACT	A	5.510e^-5	0.856	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	8402577	X_8402577_SNP [dm3] X_8508544_SNP [dm6]	G	A	5.539e^-5	0.856	INTRON CG33181
2L	378373	2L_378373_SNP [dm3] 2L_378373_SNP [dm6]	A	T	5.572e^-5	0.856	UTR_5_PRIME al	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	14813948	3L_14813948_SNP [dm3] 3L_14820848_SNP [dm6]	G	A	5.582e^-5	0.856	INTRON CG17839
2R	11330066	2R_11330066_SNP [dm3] 2R_15442561_SNP [dm6]	G	T	5.664e^-5	0.856	INTRON CG43729
2L	8696998	2L_8696998_SNP [dm3] 2L_8696998_SNP [dm6]	C	G	5.714e^-5	0.856	INTRON Hnf4	TF binding site mE1_TFBS_cnc
3L	12571356	3L_12571356_SNP [dm3] 3L_12578256_SNP [dm6]	C	T	5.740e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7276901	3L_7276901_SNP [dm3] 3L_7283801_SNP [dm6]	C	A	5.779e^-5	0.856	INTRON unc-13-4A
X	6477081	X_6477081_SNP [dm3] X_6583048_SNP [dm6]	G	T	5.803e^-5	0.856	SYNONYMOUS_CODING CG34417 INTRON CG34417
X	12795347	X_12795347_SNP [dm3] X_12901314_SNP [dm6]	A	T	5.824e^-5	0.856	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	8403065	X_8403065_SNP [dm3] X_8509032_SNP [dm6]	T	G	5.921e^-5	0.856	UPSTREAM CG33181 INTRON CG33181
3R	14850551	3R_14850551_SNP [dm3] 3R_19024829_SNP [dm6]	C	T	5.958e^-5	0.856	UTR_3_PRIME CG14286 UPSTREAM CG6005 & 1 other
2L	19233514	2L_19233514_SNP [dm3] 2L_19233514_SNP [dm6]	A	G	5.989e^-5	0.856	INTERGENIC
2R	7408586	2R_7408586_SNP [dm3] 2R_11521081_SNP [dm6]	C	T	5.993e^-5	0.856	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3095893	3L_3095893_SNP [dm3] 3L_3095893_SNP [dm6]	G	A	6.020e^-5	0.856	UPSTREAM tRNA:CR32289 & 2 others DOWNSTREAM tRNA:CR32288 & 1 other INTRON Cht7	TF binding site BDTNP1_TFBS_dl
3L	13426284	3L_13426284_DEL [dm3] 3L_13433184_DEL [dm6]	GCTGA	G	6.022e^-5	0.856	DOWNSTREAM tRNA:V4:70BCa & 1 other INTRON CG10713
X	3376671	X_3376671_SNP [dm3] X_3482638_SNP [dm6]	G	A	6.071e^-5	0.856	UPSTREAM CG10802 & 1 other INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	9430498	2L_9430498_SNP [dm3] 2L_9430498_SNP [dm6]	T	A	6.095e^-5	0.856	UPSTREAM FucTB & 1 other INTRON FucTB
X	19239412	X_19239412_SNP [dm3] X_19345379_SNP [dm6]	A	T	6.100e^-5	0.856	INTRON nAChRalpha7
3L	5886015	3L_5886015_SNP [dm3] 3L_5892915_SNP [dm6]	C	G	6.102e^-5	0.856	INTERGENIC
3L	12159601	3L_12159601_SNP [dm3] 3L_12166501_SNP [dm6]	T	C	6.158e^-5	0.856	SYNONYMOUS_CODING Rh7	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3290362	X_3290362_SNP [dm3] X_3396329_SNP [dm6]	T	A	6.294e^-5	0.856	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24444894	3R_24444894_SNP [dm3] 3R_28619172_SNP [dm6]	A	G	6.333e^-5	0.856	INTRON CG10011
3L	3095928	3L_3095928_SNP [dm3] 3L_3095928_SNP [dm6]	A	G	6.449e^-5	0.856	UPSTREAM tRNA:CR32289 & 2 others DOWNSTREAM tRNA:CR32288 & 1 other INTRON Cht7	TF binding site BDTNP1_TFBS_dl
X	12795363	X_12795363_SNP [dm3] X_12901330_SNP [dm6]	A	T	6.546e^-5	0.856	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	19008611	2R_19008611_SNP [dm3] 2R_23121088_SNP [dm6]	G	A	6.666e^-5	0.856	INTERGENIC
2L	2279895	2L_2279895_SNP [dm3] 2L_2279895_SNP [dm6]	G	A	6.884e^-5	0.856	UPSTREAM CR43753 INTERGENIC
X	2926643	X_2926643_SNP [dm3] X_3032610_SNP [dm6]	C	T	6.890e^-5	0.856	INTRON kirre
2R	12400738	2R_12400738_SNP [dm3] 2R_16513233_SNP [dm6]	C	G	6.938e^-5	0.856	INTRON Sema-2a
3L	8745109	3L_8745109_SNP [dm3] 3L_8752009_SNP [dm6]	A	G	7.003e^-5	0.856	UPSTREAM CR44527 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	20317487	2R_20317487_SNP [dm3] 2R_24429964_SNP [dm6]	G	A	7.061e^-5	0.856	INTRON CG15873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12325115	2L_12325115_SNP [dm3] 2L_12325115_SNP [dm6]	T	C	7.121e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19024800	2R_19024800_SNP [dm3] 2R_23137277_SNP [dm6]	G	A	7.125e^-5	0.856	INTERGENIC
X	2926031	X_2926031_SNP [dm3] X_3031998_SNP [dm6]	C	A	7.185e^-5	0.856	INTRON kirre
3L	13426307	3L_13426307_SNP [dm3] 3L_13433207_SNP [dm6]	T	G	7.205e^-5	0.856	DOWNSTREAM tRNA:V4:70BCa & 1 other INTRON CG10713
X	2926636	X_2926636_SNP [dm3] X_3032603_SNP [dm6]	T	A	7.281e^-5	0.856	INTRON kirre
3L	14815465	3L_14815465_SNP [dm3] 3L_14822365_SNP [dm6]	G	A	7.326e^-5	0.856	INTRON CG17839
2R	13621554	2R_13621554_SNP [dm3] 2R_17734049_SNP [dm6]	C	T	7.372e^-5	0.856	SYNONYMOUS_CODING CG34195 DOWNSTREAM CG6406	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	13621575	2R_13621575_SNP [dm3] 2R_17734070_SNP [dm6]	C	T	7.372e^-5	0.856	SYNONYMOUS_CODING CG34195 DOWNSTREAM CG6406	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	14079700	3L_14079700_SNP [dm3] 3L_14086600_SNP [dm6]	G	T	7.374e^-5	0.856	DOWNSTREAM CG8100 INTERGENIC
3L	2645026	3L_2645026_SNP [dm3] 3L_2645026_SNP [dm6]	T	A	7.381e^-5	0.856	UPSTREAM CG1143 INTERGENIC
3L	2645081	3L_2645081_SNP [dm3] 3L_2645081_SNP [dm6]	A	G	7.521e^-5	0.856	UPSTREAM CG1143 INTERGENIC
3L	7156753	3L_7156753_SNP [dm3] 3L_7163653_SNP [dm6]	G	A	7.525e^-5	0.856	INTRON Dscam2
3L	7156769	3L_7156769_SNP [dm3] 3L_7163669_SNP [dm6]	G	A	7.525e^-5	0.856	INTRON Dscam2
2R	11330698	2R_11330698_SNP [dm3] 2R_15443193_SNP [dm6]	G	T	7.534e^-5	0.856	INTRON CG43729
2R	9131300	2R_9131300_SNP [dm3] 2R_13243795_SNP [dm6]	A	T	7.551e^-5	0.856	DOWNSTREAM CR45278 INTERGENIC
2R	15733645	2R_15733645_SNP [dm3] 2R_19846140_SNP [dm6]	C	G	7.556e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	16957974	2L_16957974_SNP [dm3] 2L_16957974_SNP [dm6]	G	T	7.612e^-5	0.856	INTERGENIC
3L	14219627	3L_14219627_SNP [dm3] 3L_14226527_SNP [dm6]	C	T	7.637e^-5	0.856	INTRON nuf	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	12162515	3L_12162515_SNP [dm3] 3L_12169415_SNP [dm6]	T	A	7.707e^-5	0.856	INTRON Rh7
3R	14429863	3R_14429863_SNP [dm3] 3R_18604141_SNP [dm6]	G	T	7.708e^-5	0.856	INTRON qin & 1 other
X	12795257	X_12795257_SNP [dm3] X_12901224_SNP [dm6]	A	G	7.729e^-5	0.856	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	3360627	3L_3360627_SNP [dm3] 3L_3360627_SNP [dm6]	A	G	7.742e^-5	0.856	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
3R	16890386	3R_16890386_SNP [dm3] 3R_21064664_SNP [dm6]	A	G	7.744e^-5	0.856	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3R	13600672	3R_13600672_SNP [dm3] 3R_17774950_SNP [dm6]	C	T	7.855e^-5	0.856	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3966395	3L_3966395_SNP [dm3] 3L_3966395_SNP [dm6]	C	T	7.881e^-5	0.856	INTERGENIC
2L	15281222	2L_15281222_SNP [dm3] 2L_15281222_SNP [dm6]	A	G	7.980e^-5	0.856	DOWNSTREAM CR45349 INTERGENIC
2L	15751786	2L_15751786_SNP [dm3] 2L_15751786_SNP [dm6]	A	G	8.098e^-5	0.856	UPSTREAM l_2_35Di & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13745550	2R_13745550_SNP [dm3] 2R_17858045_SNP [dm6]	A	G	8.273e^-5	0.856	INTRON olf186-F
X	8825319	X_8825319_SNP [dm3] X_8931286_SNP [dm6]	G	A	8.306e^-5	0.856	INTRON rdgA	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	13310290	3L_13310290_SNP [dm3] 3L_13317190_SNP [dm6]	T	G	8.315e^-5	0.856	INTERGENIC
3R	8408851	3R_8408851_SNP [dm3] 3R_12583129_SNP [dm6]	G	T	8.705e^-5	0.856	INTRON Octbeta2R
X	17120347	X_17120347_SNP [dm3] X_17226314_SNP [dm6]	A	G	8.748e^-5	0.856	SYNONYMOUS_CODING CG10598
2R	9131372	2R_9131372_SNP [dm3] 2R_13243867_SNP [dm6]	T	C	8.755e^-5	0.856	DOWNSTREAM CR45278 INTERGENIC
3L	1025963	3L_1025963_SNP [dm3] 3L_1025963_SNP [dm6]	T	C	8.816e^-5	0.856	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	8825301	X_8825301_INS [dm3] X_8931268_INS [dm6]	T	TG	8.844e^-5	0.856	INTRON rdgA	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	8274107	3R_8274107_SNP [dm3] 3R_12448385_SNP [dm6]	G	A	8.862e^-5	0.856	NON_SYNONYMOUS_CODING CG5538 UPSTREAM CG18549 DOWNSTREAM Desat1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11791042	3L_11791042_SNP [dm3] 3L_11797942_SNP [dm6]	A	G	8.924e^-5	0.856	SYNONYMOUS_CODING Klp68D	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6100199	3L_6100199_SNP [dm3] 3L_6107099_SNP [dm6]	C	T	8.968e^-5	0.856	INTRON Ets65A	TF binding site mE1_TFBS_cad
2L	2863927	2L_2863927_SNP [dm3] 2L_2863927_SNP [dm6]	C	T	8.977e^-5	0.856	INTRON CG2991	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11930045	2L_11930045_SNP [dm3] 2L_11930045_SNP [dm6]	C	T	9.039e^-5	0.856	INTERGENIC
3L	6100247	3L_6100247_SNP [dm3] 3L_6107147_SNP [dm6]	C	T	9.084e^-5	0.856	INTRON Ets65A	TF binding site mE1_TFBS_cad
3R	5087274	3R_5087274_SNP [dm3] 3R_9261552_SNP [dm6]	C	A	9.102e^-5	0.856	INTRON VhaM8.9	TF binding site mE1_TFBS_HSA
2R	8443942	2R_8443942_SNP [dm3] 2R_12556437_SNP [dm6]	A	C	9.163e^-5	0.856	INTRON fra
3R	8477372	3R_8477372_SNP [dm3] 3R_12651650_SNP [dm6]	T	A	9.188e^-5	0.856	NON_SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_sens
2L	17315237	2L_17315237_SNP [dm3] 2L_17315237_SNP [dm6]	A	T	9.266e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	12795353	X_12795353_SNP [dm3] X_12901320_SNP [dm6]	T	A	9.286e^-5	0.856	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	4076263	2R_4076263_SNP [dm3] 2R_8188758_SNP [dm6]	A	T	9.319e^-5	0.856	INTRON LRP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10998493	2R_10998493_SNP [dm3] 2R_15110988_SNP [dm6]	A	G	9.330e^-5	0.856	INTERGENIC
3R	4346178	3R_4346178_SNP [dm3] 3R_8520456_SNP [dm6]	T	C	9.425e^-5	0.856	SYNONYMOUS_CODING CG11737	TF binding site mE1_TFBS_chinmo
3L	11168350	3L_11168350_SNP [dm3] 3L_11175250_SNP [dm6]	C	T	9.450e^-5	0.856	INTRON CG14142	TF binding site mE1_TFBS_cad
2R	10998491	2R_10998491_SNP [dm3] 2R_15110986_SNP [dm6]	A	G	9.452e^-5	0.856	INTERGENIC
3L	10756244	3L_10756244_SNP [dm3] 3L_10763144_SNP [dm6]	A	G	9.504e^-5	0.856	INTERGENIC
2R	9131294	2R_9131294_SNP [dm3] 2R_13243789_SNP [dm6]	A	C	9.578e^-5	0.856	DOWNSTREAM CR45278 INTERGENIC
3L	14376180	3L_14376180_SNP [dm3] 3L_14383080_SNP [dm6]	C	T	9.592e^-5	0.856	UTR_3_PRIME CG43120
2L	17385513	2L_17385513_SNP [dm3] 2L_17385513_SNP [dm6]	C	A	9.604e^-5	0.856	UPSTREAM CLIP-190 INTRON CLIP-190	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Ubx
2R	17638309	2R_17638309_SNP [dm3] 2R_21750804_SNP [dm6]	G	T	9.616e^-5	0.856	INTERGENIC
3L	2996239	3L_2996239_SNP [dm3] 3L_2996239_SNP [dm6]	A	G	9.686e^-5	0.856	DOWNSTREAM CG2113 INTERGENIC
2L	18908808	2L_18908808_SNP [dm3] 2L_18908808_SNP [dm6]	G	T	9.773e^-5	0.856	INTERGENIC
3R	3202516	3R_3202516_DEL [dm3] 3R_7376794_DEL [dm6]	AA	A	9.773e^-5	0.856	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	19024797	2R_19024797_SNP [dm3] 2R_23137274_SNP [dm6]	C	T	9.801e^-5	0.856	INTERGENIC
2R	10998501	2R_10998501_SNP [dm3] 2R_15110996_SNP [dm6]	T	G	9.817e^-5	0.856	INTERGENIC
2L	19233521	2L_19233521_SNP [dm3] 2L_19233521_SNP [dm6]	C	T	1.004e^-4	0.856	INTERGENIC
2L	7451999	2L_7451999_SNP [dm3] 2L_7451999_SNP [dm6]	G	A	1.009e^-4	0.856	UPSTREAM santa-maria DOWNSTREAM Gr28a INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3R	3410460	3R_3410460_SNP [dm3] 3R_7584738_SNP [dm6]	A	C	1.012e^-4	0.856	INTRON CG34127
2L	11419352	2L_11419352_SNP [dm3] 2L_11419352_SNP [dm6]	A	G	1.014e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13523349	2R_13523349_SNP [dm3] 2R_17635844_SNP [dm6]	G	C	1.021e^-4	0.856	INTRON CG10936
2R	16250428	2R_16250428_SNP [dm3] 2R_20362923_SNP [dm6]	A	C	1.026e^-4	0.856	INTERGENIC
2R	14932148	2R_14932148_DEL [dm3] 2R_19044643_DEL [dm6]	AA	A	1.026e^-4	0.856	INTERGENIC
2R	9131327	2R_9131327_SNP [dm3] 2R_13243822_SNP [dm6]	G	A	1.039e^-4	0.856	DOWNSTREAM CR45278 INTERGENIC
3R	10651442	3R_10651442_SNP [dm3] 3R_14825720_SNP [dm6]	T	C	1.047e^-4	0.856	SYNONYMOUS_CODING btsz
3R	18215091	3R_18215091_SNP [dm3] 3R_22389369_SNP [dm6]	T	C	1.052e^-4	0.856	START_GAINED CG5379 UTR_5_PRIME CG5379 UPSTREAM CG5379 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	17385424	2L_17385424_SNP [dm3] 2L_17385424_SNP [dm6]	A	C	1.059e^-4	0.856	UTR_5_PRIME CLIP-190 UPSTREAM CLIP-190 INTRON CLIP-190	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	4545922	3L_4545922_SNP [dm3] 3L_4545922_SNP [dm6]	G	A	1.068e^-4	0.856	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17054773	2R_17054773_SNP [dm3] 2R_21167268_SNP [dm6]	G	T	1.081e^-4	0.856	SYNONYMOUS_CODING CG4266 INTRON CG4266	TF binding site mE1_TFBS_sens
3L	8547757	3L_8547757_SNP [dm3] 3L_8554657_SNP [dm6]	A	T	1.082e^-4	0.856	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3096845	3L_3096845_SNP [dm3] 3L_3096845_SNP [dm6]	T	A	1.092e^-4	0.856	UPSTREAM tRNA:CR32286 DOWNSTREAM tRNA:CR32272 & 3 others INTRON Cht7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	7065522	3R_7065522_INS [dm3] 3R_11239800_INS [dm6]	T	TAT	1.094e^-4	0.856	DOWNSTREAM scpr-B INTRON CG31388	TF binding site BDTNP1_TFBS_twi
3R	7065524	3R_7065524_MNP [dm3] 3R_11239802_MNP [dm6]	AATAT	CTGCA	1.094e^-4	0.856	DOWNSTREAM scpr-B INTRON CG31388	TF binding site BDTNP1_TFBS_twi
2R	12400940	2R_12400940_SNP [dm3] 2R_16513435_SNP [dm6]	T	C	1.098e^-4	0.856	INTRON Sema-2a
X	19871664	X_19871664_SNP [dm3] X_19977631_SNP [dm6]	C	G	1.099e^-4	0.856	INTERGENIC
2R	18769488	2R_18769488_SNP [dm3] 2R_22881965_SNP [dm6]	G	A	1.104e^-4	0.856	DOWNSTREAM PIP5K59B & 1 other INTRON CG3501	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15281172	2L_15281172_SNP [dm3] 2L_15281172_SNP [dm6]	G	A	1.104e^-4	0.856	DOWNSTREAM CR45349 INTERGENIC
2R	6924104	2R_6924104_SNP [dm3] 2R_11036599_SNP [dm6]	A	C	1.109e^-4	0.856	INTRON luna
3L	14375533	3L_14375533_SNP [dm3] 3L_14382433_SNP [dm6]	T	A	1.111e^-4	0.856	NON_SYNONYMOUS_CODING CG43120
3R	5087199	3R_5087199_SNP [dm3] 3R_9261477_SNP [dm6]	A	G	1.125e^-4	0.856	INTRON VhaM8.9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9661315	3L_9661315_SNP [dm3] 3L_9668215_SNP [dm6]	A	G	1.128e^-4	0.856	INTRON fry	TF binding site mE1_TFBS_cad
3L	7276935	3L_7276935_SNP [dm3] 3L_7283835_SNP [dm6]	A	T	1.129e^-4	0.856	INTRON unc-13-4A
2L	7076992	2L_7076992_SNP [dm3] 2L_7076992_SNP [dm6]	T	C	1.139e^-4	0.856	INTRON Pvf2
2R	5838941	2R_5838941_SNP [dm3] 2R_9951436_SNP [dm6]	G	T	1.148e^-4	0.856	INTRON Mef2
2L	19233508	2L_19233508_SNP [dm3] 2L_19233508_SNP [dm6]	G	A	1.153e^-4	0.856	INTERGENIC
2R	11872555	2R_11872555_SNP [dm3] 2R_15985050_SNP [dm6]	T	C	1.159e^-4	0.856	SYNONYMOUS_CODING Strn-Mlck
3L	3680449	3L_3680449_SNP [dm3] 3L_3680449_SNP [dm6]	G	A	1.165e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_cad
X	3377694	X_3377694_SNP [dm3] X_3483661_SNP [dm6]	G	A	1.168e^-4	0.856	SYNONYMOUS_CODING CG10802 DOWNSTREAM CG14270 INTRON CR44999	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	19516540	3L_19516540_SNP [dm3] 3L_19523440_SNP [dm6]	G	A	1.172e^-4	0.856	INTRON Cpr76Bc
3R	5145048	3R_5145048_SNP [dm3] 3R_9319326_SNP [dm6]	G	A	1.175e^-4	0.856	INTRON CG8861
3L	7276893	3L_7276893_SNP [dm3] 3L_7283793_SNP [dm6]	C	T	1.189e^-4	0.856	INTRON unc-13-4A
2R	6795339	2R_6795339_SNP [dm3] 2R_10907834_SNP [dm6]	G	T	1.192e^-4	0.856	INTERGENIC
2R	9131453	2R_9131453_SNP [dm3] 2R_13243948_SNP [dm6]	A	C	1.201e^-4	0.856	DOWNSTREAM CR45278 INTERGENIC
2R	9131489	2R_9131489_SNP [dm3] 2R_13243984_SNP [dm6]	G	T	1.204e^-4	0.856	DOWNSTREAM CR45278 INTERGENIC
2L	7452411	2L_7452411_SNP [dm3] 2L_7452411_SNP [dm6]	T	A	1.206e^-4	0.856	DOWNSTREAM Gr28a INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3L	11276731	3L_11276731_SNP [dm3] 3L_11283631_SNP [dm6]	A	G	1.210e^-4	0.856	INTERGENIC
2R	12678631	2R_12678631_SNP [dm3] 2R_16791126_SNP [dm6]	G	A	1.212e^-4	0.856	SYNONYMOUS_CODING CG5522	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	12116819	2R_12116819_SNP [dm3] 2R_16229314_SNP [dm6]	A	G	1.212e^-4	0.856	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9304964	3R_9304964_SNP [dm3] 3R_13479242_SNP [dm6]	A	T	1.217e^-4	0.856	DOWNSTREAM CR45589 INTERGENIC
3R	16207723	3R_16207723_SNP [dm3] 3R_20382001_SNP [dm6]	A	G	1.227e^-4	0.856	SYNONYMOUS_CODING Gfrl
3L	3095934	3L_3095934_SNP [dm3] 3L_3095934_SNP [dm6]	G	A	1.229e^-4	0.856	UPSTREAM tRNA:CR32289 & 2 others DOWNSTREAM tRNA:CR32288 & 1 other INTRON Cht7	TF binding site BDTNP1_TFBS_dl
3L	12507755	3L_12507755_SNP [dm3] 3L_12514655_SNP [dm6]	T	G	1.238e^-4	0.856	NON_SYNONYMOUS_CODING sti UPSTREAM tral EXON CR45168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	9306338	3R_9306338_SNP [dm3] 3R_13480616_SNP [dm6]	T	A	1.239e^-4	0.856	INTERGENIC
3L	12147115	3L_12147115_SNP [dm3] 3L_12154015_SNP [dm6]	T	C	1.240e^-4	0.856	SYNONYMOUS_CODING Nrx-IV
2L	18910570	2L_18910570_SNP [dm3] 2L_18910570_SNP [dm6]	C	T	1.241e^-4	0.856	INTERGENIC
3L	7777439	3L_7777439_SNP [dm3] 3L_7784339_SNP [dm6]	C	T	1.251e^-4	0.856	INTRON CG32369
3R	14850571	3R_14850571_SNP [dm3] 3R_19024849_SNP [dm6]	C	G	1.253e^-4	0.856	UTR_3_PRIME CG14286 UPSTREAM CG6005 & 1 other
3R	23007538	3R_23007538_SNP [dm3] 3R_27181816_SNP [dm6]	A	C	1.257e^-4	0.856	INTRON Ser
3L	3096703	3L_3096703_INS [dm3] 3L_3096703_INS [dm6]	T	TA	1.258e^-4	0.856	UPSTREAM tRNA:CR32286 DOWNSTREAM tRNA:CR32288 & 4 others INTRON Cht7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3096737	3L_3096737_SNP [dm3] 3L_3096737_SNP [dm6]	T	G	1.258e^-4	0.856	UPSTREAM tRNA:CR32286 DOWNSTREAM tRNA:CR32288 & 4 others INTRON Cht7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3096887	3L_3096887_SNP [dm3] 3L_3096887_SNP [dm6]	T	A	1.258e^-4	0.856	UPSTREAM tRNA:CR32286 DOWNSTREAM tRNA:CR32272 & 3 others INTRON Cht7	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3096991	3L_3096991_SNP [dm3] 3L_3096991_SNP [dm6]	G	C	1.258e^-4	0.856	UPSTREAM tRNA:CR32286 & 1 other DOWNSTREAM tRNA:CR32289 & 2 others INTRON Cht7	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3097190	3L_3097190_SNP [dm3] 3L_3097190_SNP [dm6]	G	A	1.258e^-4	0.856	UPSTREAM tRNA:CR32286 & 1 other DOWNSTREAM tRNA:CR32287 & 1 other INTRON Cht7	TF binding site mE1_TFBS_HSA
3L	3097195	3L_3097195_SNP [dm3] 3L_3097195_SNP [dm6]	G	A	1.258e^-4	0.856	UPSTREAM tRNA:CR32286 & 1 other DOWNSTREAM tRNA:CR32287 & 1 other INTRON Cht7	TF binding site mE1_TFBS_HSA
3L	3097298	3L_3097298_SNP [dm3] 3L_3097298_SNP [dm6]	A	T	1.258e^-4	0.856	UPSTREAM tRNA:CR32286 & 1 other DOWNSTREAM tRNA:CR32287 & 1 other INTRON Cht7	TF binding site mE1_TFBS_HSA
X	12795370	X_12795370_INS [dm3] X_12901337_INS [dm6]	C	CTCC	1.258e^-4	0.856	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	7276899	3L_7276899_SNP [dm3] 3L_7283799_SNP [dm6]	T	G	1.259e^-4	0.856	INTRON unc-13-4A
3L	3096833	3L_3096833_SNP [dm3] 3L_3096833_SNP [dm6]	C	T	1.260e^-4	0.856	UPSTREAM tRNA:CR32286 DOWNSTREAM tRNA:CR32272 & 3 others INTRON Cht7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	13739800	2R_13739800_SNP [dm3] 2R_17852295_SNP [dm6]	G	T	1.261e^-4	0.856	UPSTREAM CG30323 INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16709511	2R_16709511_SNP [dm3] 2R_20822006_SNP [dm6]	G	A	1.263e^-4	0.856	UTR_3_PRIME insc
X	21081580	X_21081580_SNP [dm3] X_21210553_SNP [dm6]	A	G	1.270e^-4	0.856	INTRON CG32521
2L	12415089	2L_12415089_SNP [dm3] 2L_12415089_SNP [dm6]	G	A	1.271e^-4	0.856	INTRON vir-1
X	10908770	X_10908770_SNP [dm3] X_11014737_SNP [dm6]	G	T	1.274e^-4	0.856	INTRON CG42339
3L	11276715	3L_11276715_SNP [dm3] 3L_11283615_SNP [dm6]	A	C	1.279e^-4	0.856	INTERGENIC
3L	11276725	3L_11276725_SNP [dm3] 3L_11283625_SNP [dm6]	A	T	1.279e^-4	0.856	INTERGENIC
2L	7057433	2L_7057433_SNP [dm3] 2L_7057433_SNP [dm6]	C	T	1.279e^-4	0.856	SYNONYMOUS_CODING Mnn1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15213950	3R_15213950_SNP [dm3] 3R_19388228_SNP [dm6]	G	A	1.280e^-4	0.856	DOWNSTREAM CR34285 INTRON Ino80 & 1 other	TF binding site mE1_TFBS_sens
3L	12646436	3L_12646436_SNP [dm3] 3L_12653336_SNP [dm6]	A	T	1.280e^-4	0.856	UPSTREAM CR43431 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	13556691	2R_13556691_SNP [dm3] 2R_17669186_SNP [dm6]	G	T	1.282e^-4	0.856	UTR_3_PRIME eIF3-S8 UPSTREAM CG30108 & 1 other DOWNSTREAM eIF3-S8	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cnc
3R	4331834	3R_4331834_SNP [dm3] 3R_8506112_SNP [dm6]	C	T	1.288e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_cad
X	12665748	X_12665748_SNP [dm3] X_12771715_SNP [dm6]	C	T	1.289e^-4	0.856	UTR_3_PRIME CG3812 DOWNSTREAM CG32647 & 1 other
3R	8649114	3R_8649114_INS [dm3] 3R_12823392_INS [dm6]	T	TACAGACGCTCC...	1.291e^-4	0.856	INTERGENIC
3L	3096809	3L_3096809_SNP [dm3] 3L_3096809_SNP [dm6]	A	T	1.292e^-4	0.856	UPSTREAM tRNA:CR32286 DOWNSTREAM tRNA:CR32272 & 3 others INTRON Cht7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2644859	3L_2644859_SNP [dm3] 3L_2644859_SNP [dm6]	C	T	1.294e^-4	0.856	UPSTREAM CG1143 INTERGENIC
3L	3096734	3L_3096734_SNP [dm3] 3L_3096734_SNP [dm6]	T	A	1.296e^-4	0.856	UPSTREAM tRNA:CR32286 DOWNSTREAM tRNA:CR32288 & 4 others INTRON Cht7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3680456	3L_3680456_SNP [dm3] 3L_3680456_SNP [dm6]	G	T	1.301e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_cad
2R	9424200	2R_9424200_SNP [dm3] 2R_13536695_SNP [dm6]	G	A	1.304e^-4	0.856	UPSTREAM tRNA:K2:50C DOWNSTREAM CG6145 INTERGENIC
3R	14394637	3R_14394637_INS [dm3] 3R_18568915_INS [dm6]	C	CGCAC	1.315e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11576437	2R_11576437_SNP [dm3] 2R_15688932_SNP [dm6]	T	C	1.318e^-4	0.856	NON_SYNONYMOUS_CODING Cep89 UPSTREAM CG30090	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6929352	2R_6929352_SNP [dm3] 2R_11041847_SNP [dm6]	A	T	1.323e^-4	0.856	INTRON luna	TF binding site mE1_TFBS_cad
2R	11855480	2R_11855480_SNP [dm3] 2R_15967975_SNP [dm6]	G	T	1.328e^-4	0.856	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2R	10513255	2R_10513255_SNP [dm3] 2R_14625750_SNP [dm6]	C	G	1.333e^-4	0.856	INTERGENIC
2L	2924383	2L_2924383_INS [dm3] 2L_2924383_INS [dm6]	G	GGG	1.338e^-4	0.856	INTRON lilli
X	8402755	X_8402755_SNP [dm3] X_8508722_SNP [dm6]	G	C	1.339e^-4	0.856	UPSTREAM CG33181 INTRON CG33181
2R	6795340	2R_6795340_SNP [dm3] 2R_10907835_SNP [dm6]	A	G	1.340e^-4	0.856	INTERGENIC
2R	19719350	2R_19719350_SNP [dm3] 2R_23831827_SNP [dm6]	T	G	1.350e^-4	0.856	INTRON CG5549
3R	8477395	3R_8477395_SNP [dm3] 3R_12651673_SNP [dm6]	A	T	1.355e^-4	0.856	NON_SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17395644	2R_17395644_SNP [dm3] 2R_21508139_SNP [dm6]	C	T	1.358e^-4	0.856	INTRON MESK2
3L	18277295	3L_18277295_SNP [dm3] 3L_18284195_SNP [dm6]	G	T	1.374e^-4	0.856	INTERGENIC
X	13137037	X_13137037_SNP [dm3] X_13243004_SNP [dm6]	C	T	1.374e^-4	0.856	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	3095868	3L_3095868_SNP [dm3] 3L_3095868_SNP [dm6]	C	G	1.379e^-4	0.856	UPSTREAM tRNA:CR32289 & 2 others DOWNSTREAM tRNA:CR32288 INTRON Cht7	TF binding site BDTNP1_TFBS_dl
3R	13469273	3R_13469273_SNP [dm3] 3R_17643551_SNP [dm6]	T	C	1.380e^-4	0.856	INTRON CG43175
3L	12373393	3L_12373393_SNP [dm3] 3L_12380293_SNP [dm6]	G	C	1.381e^-4	0.856	INTRON Ncc69	TF binding site BDTNP1_TFBS_twi
X	8156039	X_8156039_SNP [dm3] X_8262006_SNP [dm6]	A	T	1.384e^-4	0.856	INTRON CG1632
3L	3096745	3L_3096745_SNP [dm3] 3L_3096745_SNP [dm6]	T	A	1.385e^-4	0.856	UPSTREAM tRNA:CR32286 DOWNSTREAM tRNA:CR32288 & 4 others INTRON Cht7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	12795307	X_12795307_SNP [dm3] X_12901274_SNP [dm6]	C	T	1.390e^-4	0.856	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	19712689	2R_19712689_SNP [dm3] 2R_23825166_SNP [dm6]	A	G	1.393e^-4	0.856	UPSTREAM CG4763 INTRON CG5549
3L	3096781	3L_3096781_SNP [dm3] 3L_3096781_SNP [dm6]	G	C	1.399e^-4	0.856	UPSTREAM tRNA:CR32286 DOWNSTREAM tRNA:CR32288 & 4 others INTRON Cht7	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	17190071	3L_17190071_DEL [dm3] 3L_17196971_DEL [dm6]	CCGCTACTAAAATC...	C	1.399e^-4	0.856	INTRON Rbp6
3L	12146688	3L_12146688_SNP [dm3] 3L_12153588_SNP [dm6]	T	G	1.400e^-4	0.856	INTRON Nrx-IV
3L	11474084	3L_11474084_SNP [dm3] 3L_11480984_SNP [dm6]	C	T	1.401e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_inv
3R	10122680	3R_10122680_SNP [dm3] 3R_14296958_SNP [dm6]	T	A	1.406e^-4	0.856	INTRON CG12207
3R	19061699	3R_19061699_SNP [dm3] 3R_23235977_SNP [dm6]	T	C	1.413e^-4	0.856	INTRON CG4467
2L	13785313	2L_13785313_SNP [dm3] 2L_13785313_SNP [dm6]	G	C	1.415e^-4	0.856	SYNONYMOUS_CODING CG31731 UPSTREAM CG16890 EXON CR44847	TF binding site mE1_TFBS_sens
2R	10998512	2R_10998512_SNP [dm3] 2R_15111007_SNP [dm6]	G	T	1.417e^-4	0.856	INTERGENIC
3L	3097227	3L_3097227_SNP [dm3] 3L_3097227_SNP [dm6]	C	T	1.417e^-4	0.856	UPSTREAM tRNA:CR32286 & 1 other DOWNSTREAM tRNA:CR32287 & 1 other INTRON Cht7	TF binding site mE1_TFBS_HSA
3R	8353659	3R_8353659_SNP [dm3] 3R_12527937_SNP [dm6]	C	A	1.418e^-4	0.856	NON_SYNONYMOUS_CODING Hug INTRON Octbeta3R
3L	15693061	3L_15693061_SNP [dm3] 3L_15699961_SNP [dm6]	C	T	1.419e^-4	0.856	UPSTREAM comm2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3932381	2L_3932381_SNP [dm3] 2L_3932381_SNP [dm6]	T	C	1.420e^-4	0.856	INTRON fred
2L	8868073	2L_8868073_SNP [dm3] 2L_8868073_SNP [dm6]	G	C	1.425e^-4	0.856	UPSTREAM CR45260 DOWNSTREAM CG9483 EXON CR44414
3R	27128046	3R_27128046_SNP [dm3] 3R_31302324_SNP [dm6]	C	T	1.429e^-4	0.856	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_inv
X	3380537	X_3380537_SNP [dm3] X_3486504_SNP [dm6]	A	G	1.430e^-4	0.856	NON_SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_sens
3R	6253307	3R_6253307_SNP [dm3] 3R_10427585_SNP [dm6]	G	T	1.433e^-4	0.856	INTERGENIC
3L	7276903	3L_7276903_SNP [dm3] 3L_7283803_SNP [dm6]	A	T	1.435e^-4	0.856	INTRON unc-13-4A
3R	4930464	3R_4930464_DEL [dm3] 3R_9104742_DEL [dm6]	CC	C	1.438e^-4	0.856	INTRON pum
3L	2645044	3L_2645044_SNP [dm3] 3L_2645044_SNP [dm6]	T	G	1.442e^-4	0.856	UPSTREAM CG1143 INTERGENIC
3L	12507935	3L_12507935_SNP [dm3] 3L_12514835_SNP [dm6]	T	C	1.443e^-4	0.856	UPSTREAM tral & 1 other EXON CR45168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
2L	8807137	2L_8807137_SNP [dm3] 2L_8807137_SNP [dm6]	T	C	1.443e^-4	0.856	INTERGENIC
X	3136990	X_3136990_SNP [dm3] X_3242957_SNP [dm6]	A	G	1.444e^-4	0.856	UPSTREAM ng3 DOWNSTREAM ng1 & 1 other INTRON dnc
3L	14561076	3L_14561076_SNP [dm3] 3L_14567976_SNP [dm6]	T	C	1.463e^-4	0.859	SYNONYMOUS_CODING CG42758
3L	3096717	3L_3096717_SNP [dm3] 3L_3096717_SNP [dm6]	A	T	1.471e^-4	0.859	UPSTREAM tRNA:CR32286 DOWNSTREAM tRNA:CR32288 & 4 others INTRON Cht7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	11650776	3L_11650776_SNP [dm3] 3L_11657676_SNP [dm6]	G	A	1.478e^-4	0.859	DOWNSTREAM mir-274 INTRON CG32085
X	3380974	X_3380974_SNP [dm3] X_3486941_SNP [dm6]	G	A	1.487e^-4	0.859	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3381085	X_3381085_SNP [dm3] X_3487052_SNP [dm6]	G	C	1.487e^-4	0.859	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3410470	3R_3410470_SNP [dm3] 3R_7584748_SNP [dm6]	A	T	1.499e^-4	0.859	INTRON CG34127
3L	8391974	3L_8391974_SNP [dm3] 3L_8398874_SNP [dm6]	G	A	1.500e^-4	0.859	INTRON CG7120
3L	11168325	3L_11168325_SNP [dm3] 3L_11175225_SNP [dm6]	T	A	1.501e^-4	0.859	INTRON CG14142
3L	11168332	3L_11168332_SNP [dm3] 3L_11175232_SNP [dm6]	A	T	1.501e^-4	0.859	INTRON CG14142
2R	12821182	2R_12821182_DEL [dm3] 2R_16933677_DEL [dm6]	TTC	T	1.501e^-4	0.859	INTRON Pkc53E	TF binding site BDTNP1_TFBS_twi
2L	7452226	2L_7452226_SNP [dm3] 2L_7452226_SNP [dm6]	C	T	1.501e^-4	0.859	UPSTREAM santa-maria DOWNSTREAM Gr28a INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3R	16207581	3R_16207581_SNP [dm3] 3R_20381859_SNP [dm6]	C	T	1.503e^-4	0.859	INTRON Gfrl
2R	8383716	2R_8383716_SNP [dm3] 2R_12496211_SNP [dm6]	C	T	1.512e^-4	0.859	INTRON fdl & 1 other
2R	8383732	2R_8383732_SNP [dm3] 2R_12496227_SNP [dm6]	A	T	1.512e^-4	0.859	INTRON fdl & 1 other
3L	8908321	3L_8908321_SNP [dm3] 3L_8915221_SNP [dm6]	C	T	1.524e^-4	0.861	UPSTREAM CR43970 INTRON Tsp66E
3L	12571334	3L_12571334_SNP [dm3] 3L_12578234_SNP [dm6]	A	T	1.524e^-4	0.861	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14561228	3L_14561228_SNP [dm3] 3L_14568128_SNP [dm6]	T	G	1.535e^-4	0.864	UTR_3_PRIME CG42758
3R	6192799	3R_6192799_SNP [dm3] 3R_10367077_SNP [dm6]	T	C	1.551e^-4	0.869	SYNONYMOUS_CODING Rfx INTRON Rfx
X	1196886	X_1196886_SNP [dm3] X_1302853_SNP [dm6]	T	C	1.558e^-4	0.869	INTRON DAAM	TF binding site mE1_TFBS_chinmo
2L	5544938	2L_5544938_SNP [dm3] 2L_5544938_SNP [dm6]	A	T	1.559e^-4	0.869	SYNONYMOUS_CODING Lam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	11872516	2R_11872516_SNP [dm3] 2R_15985011_SNP [dm6]	T	A	1.567e^-4	0.869	SYNONYMOUS_CODING Strn-Mlck
3L	15688844	3L_15688844_SNP [dm3] 3L_15695744_SNP [dm6]	T	A	1.568e^-4	0.869	INTERGENIC
2R	11443520	2R_11443520_SNP [dm3] 2R_15556015_SNP [dm6]	G	A	1.572e^-4	0.869	SPLICE_SITE_DONOR CG12963 UPSTREAM CG12963 INTRON CG12963
3R	5085332	3R_5085332_SNP [dm3] 3R_9259610_SNP [dm6]	C	A	1.583e^-4	0.87	INTRON CG8436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	6924102	2R_6924102_SNP [dm3] 2R_11036597_SNP [dm6]	C	G	1.591e^-4	0.87	INTRON luna
X	8825311	X_8825311_SNP [dm3] X_8931278_SNP [dm6]	A	T	1.596e^-4	0.87	INTRON rdgA	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16919631	2R_16919631_SNP [dm3] 2R_21032126_SNP [dm6]	G	A	1.597e^-4	0.87	INTERGENIC
2R	11330408	2R_11330408_SNP [dm3] 2R_15442903_SNP [dm6]	C	T	1.606e^-4	0.87	INTRON CG43729
3R	19325039	3R_19325039_SNP [dm3] 3R_23499317_SNP [dm6]	T	C	1.612e^-4	0.87	INTERGENIC
3L	8391972	3L_8391972_SNP [dm3] 3L_8398872_SNP [dm6]	A	T	1.616e^-4	0.87	INTRON CG7120
3R	17749543	3R_17749543_SNP [dm3] 3R_21923821_SNP [dm6]	T	C	1.620e^-4	0.87	INTERGENIC
3L	11597825	3L_11597825_SNP [dm3] 3L_11604725_SNP [dm6]	G	T	1.622e^-4	0.87	UTR_3_PRIME CG7368 DOWNSTREAM CG6091
2L	8619047	2L_8619047_SNP [dm3] 2L_8619047_SNP [dm6]	C	T	1.628e^-4	0.87	UPSTREAM tRNA:CR31602 INTRON Sema-1a
3L	16952764	3L_16952764_DEL [dm3] 3L_16959664_DEL [dm6]	TGACATGACAATAAAT...	T	1.630e^-4	0.87	INTRON Nc73EF
2L	9053262	2L_9053262_SNP [dm3] 2L_9053262_SNP [dm6]	T	A	1.630e^-4	0.87	INTRON CG31708
3R	10652861	3R_10652861_SNP [dm3] 3R_14827139_SNP [dm6]	T	C	1.633e^-4	0.87	SYNONYMOUS_CODING btsz UTR_5_PRIME btsz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13137038	X_13137038_SNP [dm3] X_13243005_SNP [dm6]	A	G	1.643e^-4	0.872	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11168307	3L_11168307_SNP [dm3] 3L_11175207_SNP [dm6]	T	A	1.654e^-4	0.876	INTRON CG14142
3R	8408904	3R_8408904_SNP [dm3] 3R_12583182_SNP [dm6]	T	G	1.661e^-4	0.877	INTRON Octbeta2R
2R	6929168	2R_6929168_SNP [dm3] 2R_11041663_SNP [dm6]	T	G	1.677e^-4	0.88	INTRON luna
3L	2194065	3L_2194065_SNP [dm3] 3L_2194065_SNP [dm6]	C	T	1.679e^-4	0.88	INTERGENIC
2R	14077068	2R_14077068_SNP [dm3] 2R_18189563_SNP [dm6]	G	A	1.681e^-4	0.88	UTR_3_PRIME CG14500 INTRON CG33958
3L	12134701	3L_12134701_SNP [dm3] 3L_12141601_SNP [dm6]	G	A	1.696e^-4	0.885	SYNONYMOUS_CODING RhoGAP68F
3R	19116275	3R_19116275_SNP [dm3] 3R_23290553_SNP [dm6]	C	T	1.700e^-4	0.885	UTR_3_PRIME pnt UPSTREAM CG4434 DOWNSTREAM pnt
2R	3078631	2R_3078631_DEL [dm3] 2R_7191126_DEL [dm6]	TACT	T	1.707e^-4	0.885	INTRON pk	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3L	2645041	3L_2645041_SNP [dm3] 3L_2645041_SNP [dm6]	G	T	1.709e^-4	0.885	UPSTREAM CG1143 INTERGENIC
3L	12899010	3L_12899010_SNP [dm3] 3L_12905910_SNP [dm6]	T	A	1.727e^-4	0.89	INTERGENIC
3L	18291661	3L_18291661_INS [dm3] 3L_18298561_INS [dm6]	A	AA	1.727e^-4	0.89	DOWNSTREAM CG13700 INTERGENIC
2L	6223395	2L_6223395_DEL [dm3] 2L_6223395_DEL [dm6]	CG	C	1.749e^-4	0.893	INTERGENIC
X	6477066	X_6477066_SNP [dm3] X_6583033_SNP [dm6]	A	G	1.752e^-4	0.893	SYNONYMOUS_CODING CG34417 INTRON CG34417
2R	8443947	2R_8443947_SNP [dm3] 2R_12556442_SNP [dm6]	C	A	1.755e^-4	0.893	INTRON fra
X	1191641	X_1191641_SNP [dm3] X_1297608_SNP [dm6]	C	A	1.767e^-4	0.893	DOWNSTREAM CG32811 INTRON DAAM	TF binding site mE1_TFBS_chinmo
2R	13772987	2R_13772987_SNP [dm3] 2R_17885482_SNP [dm6]	T	C	1.771e^-4	0.893	INTRON Elk
2L	19908434	2L_19908434_SNP [dm3] 2L_19908434_SNP [dm6]	T	G	1.771e^-4	0.893	INTRON sick
X	19020595	X_19020595_SNP [dm3] X_19126562_SNP [dm6]	G	A	1.772e^-4	0.893	INTRON tgy
3L	10293155	3L_10293155_SNP [dm3] 3L_10300055_SNP [dm6]	A	G	1.792e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	8825312	X_8825312_SNP [dm3] X_8931279_SNP [dm6]	A	G	1.793e^-4	0.893	INTRON rdgA	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21652722	3R_21652722_SNP [dm3] 3R_25827000_SNP [dm6]	C	G	1.801e^-4	0.893	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	19230546	2L_19230546_SNP [dm3] 2L_19230546_SNP [dm6]	C	G	1.815e^-4	0.893	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
X	16791329	X_16791329_SNP [dm3] X_16897296_SNP [dm6]	G	A	1.825e^-4	0.893	UPSTREAM CG33252 INTERGENIC
3R	21011193	3R_21011193_SNP [dm3] 3R_25185471_SNP [dm6]	G	A	1.831e^-4	0.893	INTRON lobo & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3146231	3R_3146231_SNP [dm3] 3R_7320509_SNP [dm6]	T	A	1.838e^-4	0.893	INTERGENIC
2L	4317869	2L_4317869_SNP [dm3] 2L_4317869_SNP [dm6]	A	T	1.840e^-4	0.893	INTRON tutl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6100265	3L_6100265_SNP [dm3] 3L_6107165_SNP [dm6]	C	T	1.841e^-4	0.893	INTRON Ets65A	TF binding site mE1_TFBS_cad
X	19871581	X_19871581_SNP [dm3] X_19977548_SNP [dm6]	T	G	1.842e^-4	0.893	INTERGENIC
3R	13600157	3R_13600157_SNP [dm3] 3R_17774435_SNP [dm6]	T	G	1.845e^-4	0.893	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3L	16804525	3L_16804525_SNP [dm3] 3L_16811425_SNP [dm6]	C	T	1.846e^-4	0.893	INTRON nudC & 1 other
3R	8620231	3R_8620231_SNP [dm3] 3R_12794509_SNP [dm6]	T	A	1.848e^-4	0.893	INTERGENIC
2R	16919632	2R_16919632_SNP [dm3] 2R_21032127_SNP [dm6]	G	A	1.849e^-4	0.893	INTERGENIC
3L	6100256	3L_6100256_SNP [dm3] 3L_6107156_SNP [dm6]	A	C	1.852e^-4	0.893	INTRON Ets65A	TF binding site mE1_TFBS_cad
2R	6360974	2R_6360974_SNP [dm3] 2R_10473469_SNP [dm6]	A	G	1.856e^-4	0.893	INTRON whd
3R	5963561	3R_5963561_SNP [dm3] 3R_10137839_SNP [dm6]	T	C	1.857e^-4	0.893	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	18204010	3R_18204010_SNP [dm3] 3R_22378288_SNP [dm6]	A	G	1.857e^-4	0.893	NON_SYNONYMOUS_CODING CG18596
2L	19505745	2L_19505745_SNP [dm3] 2L_19505745_SNP [dm6]	A	T	1.858e^-4	0.893	NON_SYNONYMOUS_CODING CG10188	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	18262635	3L_18262635_SNP [dm3] 3L_18269535_SNP [dm6]	T	A	1.869e^-4	0.896	INTERGENIC
2R	12544583	2R_12544583_SNP [dm3] 2R_16657078_SNP [dm6]	C	T	1.884e^-4	0.898	SYNONYMOUS_CODING Picot	TF binding site mE1_TFBS_cad
2R	11330036	2R_11330036_SNP [dm3] 2R_15442531_SNP [dm6]	G	C	1.887e^-4	0.898	INTRON CG43729
3R	13451266	3R_13451266_SNP [dm3] 3R_17625544_SNP [dm6]	C	T	1.888e^-4	0.898	UPSTREAM tRNA:T:90Ca & 1 other INTRON AttD
2L	16958014	2L_16958014_SNP [dm3] 2L_16958014_SNP [dm6]	A	C	1.936e^-4	0.919	INTERGENIC
3L	12484410	3L_12484410_SNP [dm3] 3L_12491310_SNP [dm6]	A	G	1.941e^-4	0.919	UPSTREAM CG10660 & 1 other DOWNSTREAM CG10657 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
2L	10446109	2L_10446109_SNP [dm3] 2L_10446109_SNP [dm6]	A	T	1.958e^-4	0.924	INTRON loh
2L	6912172	2L_6912172_SNP [dm3] 2L_6912172_SNP [dm6]	C	G	1.961e^-4	0.924	DOWNSTREAM Rat1 INTRON Wee1
3R	14739820	3R_14739820_SNP [dm3] 3R_18914098_SNP [dm6]	T	C	1.974e^-4	0.924	UPSTREAM Xrp1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	4045004	3R_4045004_SNP [dm3] 3R_8219282_SNP [dm6]	A	G	1.976e^-4	0.924	NON_SYNONYMOUS_CODING CG7800 UPSTREAM CG18249
3R	3408993	3R_3408993_SNP [dm3] 3R_7583271_SNP [dm6]	A	G	1.986e^-4	0.924	INTRON CG34127
3L	1103387	3L_1103387_SNP [dm3] 3L_1103387_SNP [dm6]	C	T	1.989e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	12037051	2R_12037051_SNP [dm3] 2R_16149546_SNP [dm6]	G	A	2.002e^-4	0.924	SYNONYMOUS_CODING CG10731 UPSTREAM Ext2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	3265898	2R_3265898_SNP [dm3] 2R_7378393_SNP [dm6]	C	A	2.006e^-4	0.924	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
2L	15281202	2L_15281202_DEL [dm3] 2L_15281202_DEL [dm6]	CC	T	2.009e^-4	0.924	DOWNSTREAM CR45349 INTERGENIC
X	1193718	X_1193718_SNP [dm3] X_1299685_SNP [dm6]	G	A	2.010e^-4	0.924	INTRON DAAM	TF binding site mE1_TFBS_chinmo
2R	11330331	2R_11330331_SNP [dm3] 2R_15442826_SNP [dm6]	A	G	2.013e^-4	0.924	INTRON CG43729
2L	7202015	2L_7202015_SNP [dm3] 2L_7202015_SNP [dm6]	C	A	2.031e^-4	0.924	INTRON CG4502
3R	15325848	3R_15325848_SNP [dm3] 3R_19500126_SNP [dm6]	C	T	2.032e^-4	0.924	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13549841	3L_13549841_SNP [dm3] 3L_13556741_SNP [dm6]	A	G	2.040e^-4	0.924	INTRON bru-3
3L	11168356	3L_11168356_INS [dm3] 3L_11175256_INS [dm6]	G	TTATA	2.044e^-4	0.924	INTRON CG14142	TF binding site mE1_TFBS_cad
2L	10446105	2L_10446105_SNP [dm3] 2L_10446105_SNP [dm6]	G	T	2.068e^-4	0.924	INTRON loh
2R	1694463	2R_1694463_INS [dm3] 2R_5806958_INS [dm6]	A	AGCTCCGAGCTCA...	2.076e^-4	0.924	INTRON dpr12	TF binding site BDTNP1_TFBS_prd
3L	22902120	3L_22902120_SNP [dm3] 3L_22909020_SNP [dm6]	G	C	2.076e^-4	0.924	UPSTREAM CR45661 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	10852647	3L_10852647_SNP [dm3] 3L_10859547_SNP [dm6]	T	A	2.088e^-4	0.924	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_kn
2R	11576600	2R_11576600_SNP [dm3] 2R_15689095_SNP [dm6]	G	T	2.089e^-4	0.924	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19024849	2R_19024849_SNP [dm3] 2R_23137326_SNP [dm6]	T	G	2.090e^-4	0.924	INTERGENIC
3R	8611515	3R_8611515_SNP [dm3] 3R_12785793_SNP [dm6]	C	G	2.093e^-4	0.924	INTERGENIC
X	1191522	X_1191522_SNP [dm3] X_1297489_SNP [dm6]	T	C	2.094e^-4	0.924	DOWNSTREAM CG32811 INTRON DAAM	TF binding site mE1_TFBS_chinmo
2L	9443469	2L_9443469_SNP [dm3] 2L_9443469_SNP [dm6]	C	T	2.098e^-4	0.924	INTRON numb
3R	9573889	3R_9573889_SNP [dm3] 3R_13748167_SNP [dm6]	T	A	2.102e^-4	0.924	INTRON CG34383	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17826213	2R_17826213_SNP [dm3] 2R_21938708_SNP [dm6]	T	C	2.104e^-4	0.924	INTRON Fili
2R	12697643	2R_12697643_SNP [dm3] 2R_16810138_SNP [dm6]	G	A	2.105e^-4	0.924	UPSTREAM CR44465 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5838384	3L_5838384_SNP [dm3] 3L_5845284_SNP [dm6]	G	A	2.105e^-4	0.924	UTR_5_PRIME vn	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	8404903	X_8404903_DEL [dm3] X_8510870_DEL [dm6]	ATTA	A	2.106e^-4	0.924	INTRON CG33181	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17034063	2R_17034063_SNP [dm3] 2R_21146558_SNP [dm6]	C	T	2.106e^-4	0.924	SYNONYMOUS_CODING Hmg-2 DOWNSTREAM Xbp1 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	10580968	2L_10580968_SNP [dm3] 2L_10580968_SNP [dm6]	G	T	2.107e^-4	0.924	UTR_3_PRIME CG34161 DOWNSTREAM CG34161 & 1 other INTRON Trim9
2R	6054368	2R_6054368_SNP [dm3] 2R_10166863_SNP [dm6]	T	G	2.111e^-4	0.924	INTRON KCNQ
2L	12325098	2L_12325098_SNP [dm3] 2L_12325098_SNP [dm6]	C	T	2.114e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19469104	2L_19469104_SNP [dm3] 2L_19469104_SNP [dm6]	A	G	2.120e^-4	0.924	UPSTREAM CR45722 DOWNSTREAM CR45723 INTERGENIC
X	4603500	X_4603500_SNP [dm3] X_4709467_SNP [dm6]	A	G	2.131e^-4	0.926	INTRON Proc-R
3L	2016127	3L_2016127_DEL [dm3] 3L_2016127_DEL [dm6]	GTTCTACTCATAATTCAGGA...	G	2.135e^-4	0.926	INTERGENIC
3L	1010439	3L_1010439_SNP [dm3] 3L_1010439_SNP [dm6]	A	G	2.141e^-4	0.927	INTRON trio
3L	15689315	3L_15689315_SNP [dm3] 3L_15696215_SNP [dm6]	A	G	2.165e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12765329	3R_12765329_SNP [dm3] 3R_16939607_SNP [dm6]	G	A	2.173e^-4	0.935	INTRON Abd-B	TF binding site mE1_TFBS_cad
2L	15649286	2L_15649286_SNP [dm3] 2L_15649286_SNP [dm6]	A	G	2.182e^-4	0.935	SYNONYMOUS_CODING CG4587
2L	6791485	2L_6791485_SNP [dm3] 2L_6791485_SNP [dm6]	T	A	2.185e^-4	0.935	INTRON nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9422265	2R_9422265_SNP [dm3] 2R_13534760_SNP [dm6]	G	T	2.185e^-4	0.935	UPSTREAM Vmat INTERGENIC
2L	19250478	2L_19250478_SNP [dm3] 2L_19250478_SNP [dm6]	C	T	2.195e^-4	0.936	INTERGENIC
2R	17550586	2R_17550586_INS [dm3] 2R_21663081_INS [dm6]	T	TATAT	2.202e^-4	0.936	UPSTREAM CR44748 & 1 other INTERGENIC
3R	13570469	3R_13570469_SNP [dm3] 3R_17744747_SNP [dm6]	A	G	2.212e^-4	0.936	INTRON TyrRII
3L	11168354	3L_11168354_SNP [dm3] 3L_11175254_SNP [dm6]	G	A	2.213e^-4	0.936	INTRON CG14142	TF binding site mE1_TFBS_cad
2L	18328716	2L_18328716_SNP [dm3] 2L_18328716_SNP [dm6]	T	C	2.213e^-4	0.936	INTRON Fas3
2L	19908443	2L_19908443_SNP [dm3] 2L_19908443_SNP [dm6]	T	A	2.223e^-4	0.936	INTRON sick
2R	9692070	2R_9692070_SNP [dm3] 2R_13804565_SNP [dm6]	C	A	2.227e^-4	0.936	INTRON Cpr50Cb
2R	9131320	2R_9131320_SNP [dm3] 2R_13243815_SNP [dm6]	T	G	2.235e^-4	0.936	DOWNSTREAM CR45278 INTERGENIC
2L	10924781	2L_10924781_SNP [dm3] 2L_10924781_SNP [dm6]	G	T	2.245e^-4	0.936	INTRON dpr2
3R	5129759	3R_5129759_SNP [dm3] 3R_9304037_SNP [dm6]	C	A	2.256e^-4	0.936	INTRON CG8861
3L	20001523	3L_20001523_SNP [dm3] 3L_20008423_SNP [dm6]	A	C	2.260e^-4	0.936	INTRON kug
2R	6965286	2R_6965286_SNP [dm3] 2R_11077781_SNP [dm6]	T	A	2.261e^-4	0.936	INTRON luna
3R	6105630	3R_6105630_SNP [dm3] 3R_10279908_SNP [dm6]	T	A	2.263e^-4	0.936	INTRON CG43143
2L	20720966	2L_20720966_SNP [dm3] 2L_20720966_SNP [dm6]	G	T	2.264e^-4	0.936	UPSTREAM CR45306 INTERGENIC
2R	6360982	2R_6360982_SNP [dm3] 2R_10473477_SNP [dm6]	G	A	2.265e^-4	0.936	INTRON whd
2R	9421541	2R_9421541_SNP [dm3] 2R_13534036_SNP [dm6]	G	A	2.266e^-4	0.936	INTRON Vmat	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	4346206	3R_4346206_SNP [dm3] 3R_8520484_SNP [dm6]	A	T	2.278e^-4	0.936	NON_SYNONYMOUS_CODING CG11737
2L	20128377	2L_20128377_SNP [dm3] 2L_20128377_SNP [dm6]	C	T	2.279e^-4	0.936	INTERGENIC
2L	19469329	2L_19469329_SNP [dm3] 2L_19469329_SNP [dm6]	C	T	2.297e^-4	0.936	DOWNSTREAM CR45723 EXON CR45722
3L	3871218	3L_3871218_SNP [dm3] 3L_3871218_SNP [dm6]	C	T	2.304e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1270489	2L_1270489_SNP [dm3] 2L_1270489_SNP [dm6]	G	A	2.313e^-4	0.936	INTRON robo3
3L	7276979	3L_7276979_SNP [dm3] 3L_7283879_SNP [dm6]	G	A	2.314e^-4	0.936	INTRON unc-13-4A
3R	3246220	3R_3246220_SNP [dm3] 3R_7420498_SNP [dm6]	C	G	2.319e^-4	0.936	NON_SYNONYMOUS_CODING CG34023 UPSTREAM wa-cup DOWNSTREAM CG31544
3R	25759599	3R_25759599_SNP [dm3] 3R_29933877_SNP [dm6]	C	T	2.327e^-4	0.936	NON_SYNONYMOUS_CODING CG42557 START_GAINED CG42558 UTR_5_PRIME CG42558 UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4331830	3R_4331830_SNP [dm3] 3R_8506108_SNP [dm6]	C	T	2.329e^-4	0.936	INTERGENIC	TF binding site mE1_TFBS_cad
2R	13556727	2R_13556727_SNP [dm3] 2R_17669222_SNP [dm6]	A	T	2.342e^-4	0.936	UTR_3_PRIME eIF3-S8 UPSTREAM CG30108 & 1 other DOWNSTREAM eIF3-S8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
3R	8349902	3R_8349902_SNP [dm3] 3R_12524180_SNP [dm6]	A	T	2.347e^-4	0.936	INTRON Octbeta3R
3R	22602589	3R_22602589_SNP [dm3] 3R_26776867_SNP [dm6]	A	T	2.355e^-4	0.936	INTERGENIC
2R	11530566	2R_11530566_SNP [dm3] 2R_15643061_SNP [dm6]	T	C	2.367e^-4	0.936	INTRON CG42524
2R	20251831	2R_20251831_SNP [dm3] 2R_24364308_SNP [dm6]	G	T	2.368e^-4	0.936	INTRON bs & 1 other
2R	19719423	2R_19719423_SNP [dm3] 2R_23831900_SNP [dm6]	A	G	2.375e^-4	0.936	INTRON CG5549
2R	12078185	2R_12078185_SNP [dm3] 2R_16190680_SNP [dm6]	C	A	2.377e^-4	0.936	NON_SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2644427	3L_2644427_SNP [dm3] 3L_2644427_SNP [dm6]	G	C	2.379e^-4	0.936	UPSTREAM CG1143 INTERGENIC
X	18464186	X_18464186_SNP [dm3] X_18570153_SNP [dm6]	C	A	2.412e^-4	0.936	INTRON Bx	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
3L	3515596	3L_3515596_SNP [dm3] 3L_3515596_SNP [dm6]	G	A	2.423e^-4	0.936	UPSTREAM Eip63E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
3R	13600041	3R_13600041_SNP [dm3] 3R_17774319_SNP [dm6]	C	T	2.431e^-4	0.936	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
X	12793500	X_12793500_SNP [dm3] X_12899467_SNP [dm6]	T	A	2.443e^-4	0.936	UPSTREAM CG32650 INTRON CG32649	TF binding site mE1_TFBS_chinmo
X	20262267	X_20262267_SNP [dm3] X_20391240_SNP [dm6]	A	G	2.444e^-4	0.936	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19631127	X_19631127_SNP [dm3] X_19737094_SNP [dm6]	A	G	2.445e^-4	0.936	SYNONYMOUS_CODING CG14234	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13810039	3R_13810039_SNP [dm3] 3R_17984317_SNP [dm6]	T	G	2.445e^-4	0.936	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4757770	3L_4757770_SNP [dm3] 3L_4757770_SNP [dm6]	G	T	2.446e^-4	0.936	UPSTREAM CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	412348	3L_412348_SNP [dm3] 3L_412348_SNP [dm6]	T	C	2.449e^-4	0.936	INTERGENIC
3L	14816333	3L_14816333_SNP [dm3] 3L_14823233_SNP [dm6]	G	A	2.450e^-4	0.936	INTRON CG17839
3L	20938292	3L_20938292_SNP [dm3] 3L_20945192_SNP [dm6]	T	C	2.451e^-4	0.936	INTRON fng	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11168316	3L_11168316_SNP [dm3] 3L_11175216_SNP [dm6]	G	C	2.452e^-4	0.936	INTRON CG14142
3L	18563584	3L_18563584_SNP [dm3] 3L_18570484_SNP [dm6]	A	G	2.460e^-4	0.936	INTRON AstC-R1
X	17125376	X_17125376_SNP [dm3] X_17231343_SNP [dm6]	C	A	2.464e^-4	0.936	UPSTREAM CG10597 INTERGENIC
X	5440683	X_5440683_SNP [dm3] X_5546650_SNP [dm6]	T	A	2.465e^-4	0.936	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	14487879	2L_14487879_SNP [dm3] 2L_14487879_SNP [dm6]	C	T	2.467e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16791311	X_16791311_SNP [dm3] X_16897278_SNP [dm6]	G	C	2.467e^-4	0.936	UPSTREAM CG33252 INTERGENIC
X	19239423	X_19239423_SNP [dm3] X_19345390_SNP [dm6]	T	A	2.470e^-4	0.936	INTRON nAChRalpha7
3R	19808689	3R_19808689_DEL [dm3] 3R_23982967_DEL [dm6]	AA	A	2.471e^-4	0.936	UTR_3_PRIME CG31140 UPSTREAM CR31451	TF binding site BDTNP1_TFBS_dl
3R	3200634	3R_3200634_SNP [dm3] 3R_7374912_SNP [dm6]	T	C	2.473e^-4	0.936	INTERGENIC
2L	18376134	2L_18376134_SNP [dm3] 2L_18376134_SNP [dm6]	C	A	2.478e^-4	0.936	INTRON Fas3	TF binding site mE1_TFBS_sbb
2R	10998487	2R_10998487_SNP [dm3] 2R_15110982_SNP [dm6]	T	C	2.481e^-4	0.936	INTERGENIC
3L	4486051	3L_4486051_SNP [dm3] 3L_4486051_SNP [dm6]	T	A	2.492e^-4	0.936	SYNONYMOUS_CODING CG13722	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9873427	3L_9873427_SNP [dm3] 3L_9880327_SNP [dm6]	A	G	2.505e^-4	0.936	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
3R	14429852	3R_14429852_SNP [dm3] 3R_18604130_SNP [dm6]	A	G	2.507e^-4	0.936	INTRON qin & 1 other
2R	12077610	2R_12077610_SNP [dm3] 2R_16190105_SNP [dm6]	T	C	2.507e^-4	0.936	SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14086288	2R_14086288_SNP [dm3] 2R_18198783_SNP [dm6]	A	C	2.507e^-4	0.936	INTERGENIC
3L	17189913	3L_17189913_SNP [dm3] 3L_17196813_SNP [dm6]	C	T	2.508e^-4	0.936	INTRON Rbp6
2R	6460371	2R_6460371_SNP [dm3] 2R_10572866_SNP [dm6]	C	A	2.514e^-4	0.936	INTRON psq
3R	21276634	3R_21276634_SNP [dm3] 3R_25450912_SNP [dm6]	C	T	2.514e^-4	0.936	INTRON Fur1
3R	7321694	3R_7321694_SNP [dm3] 3R_11495972_SNP [dm6]	T	C	2.532e^-4	0.936	INTERGENIC
3R	6105638	3R_6105638_DEL [dm3] 3R_10279916_DEL [dm6]	ATGACTCCA	A	2.532e^-4	0.936	INTRON CG43143
3L	16691025	3L_16691025_SNP [dm3] 3L_16697925_SNP [dm6]	G	A	2.539e^-4	0.936	DOWNSTREAM CR45179 INTRON Lasp & 1 other
3L	18662988	3L_18662988_INS [dm3] 3L_18669888_INS [dm6]	G	GCTG	2.541e^-4	0.936	CODON_INSERTION Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	17054875	2R_17054875_SNP [dm3] 2R_21167370_SNP [dm6]	T	G	2.558e^-4	0.936	SYNONYMOUS_CODING CG4266 INTRON CG4266	TF binding site mE1_TFBS_sens
2R	11862814	2R_11862814_SNP [dm3] 2R_15975309_SNP [dm6]	G	C	2.559e^-4	0.936	NON_SYNONYMOUS_CODING Strn-Mlck
2L	2922161	2L_2922161_SNP [dm3] 2L_2922161_SNP [dm6]	T	A	2.566e^-4	0.936	INTRON lilli
3L	12133844	3L_12133844_SNP [dm3] 3L_12140744_SNP [dm6]	G	A	2.571e^-4	0.936	INTRON RhoGAP68F
2R	20029717	2R_20029717_SNP [dm3] 2R_24142194_SNP [dm6]	T	C	2.574e^-4	0.936	INTRON Dat
3R	18909679	3R_18909679_SNP [dm3] 3R_23083957_SNP [dm6]	C	A	2.577e^-4	0.936	INTRON CG13830	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19894337	2R_19894337_SNP [dm3] 2R_24006814_SNP [dm6]	A	G	2.584e^-4	0.936	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16719710	3L_16719710_SNP [dm3] 3L_16726610_SNP [dm6]	C	G	2.586e^-4	0.936	SYNONYMOUS_CODING PGRP-SB2 UPSTREAM CG13026 DOWNSTREAM PGRP-SB1	TF binding site mE1_TFBS_inv
2R	14420804	2R_14420804_SNP [dm3] 2R_18533299_SNP [dm6]	T	G	2.593e^-4	0.936	SYNONYMOUS_CODING CG10924	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	2325690	2L_2325690_SNP [dm3] 2L_2325690_SNP [dm6]	G	C	2.594e^-4	0.936	INTRON CG9967 & 1 other
3R	8388326	3R_8388326_SNP [dm3] 3R_12562604_SNP [dm6]	C	T	2.610e^-4	0.936	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
2L	6791647	2L_6791647_SNP [dm3] 2L_6791647_SNP [dm6]	C	A	2.615e^-4	0.936	INTRON nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15126711	2L_15126711_SNP [dm3] 2L_15126711_SNP [dm6]	A	G	2.618e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15688841	3L_15688841_SNP [dm3] 3L_15695741_SNP [dm6]	G	T	2.639e^-4	0.936	INTERGENIC
2R	17550346	2R_17550346_SNP [dm3] 2R_21662841_SNP [dm6]	A	C	2.644e^-4	0.936	UTR_5_PRIME pirk UPSTREAM CR44748 & 1 other
2R	17122056	2R_17122056_SNP [dm3] 2R_21234551_SNP [dm6]	C	T	2.650e^-4	0.936	INTRON ASPP
3R	11987315	3R_11987315_SNP [dm3] 3R_16161593_SNP [dm6]	C	T	2.654e^-4	0.936	INTRON CG6006
3R	14394837	3R_14394837_SNP [dm3] 3R_18569115_SNP [dm6]	A	T	2.656e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15325833	3R_15325833_INS [dm3] 3R_19500111_INS [dm6]	A	GTACGG	2.657e^-4	0.936	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8325212	2R_8325212_SNP [dm3] 2R_12437707_SNP [dm6]	C	G	2.658e^-4	0.936	UTR_5_PRIME Dyb DOWNSTREAM CG30051 INTRON Dyb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8711596	3L_8711596_SNP [dm3] 3L_8718496_SNP [dm6]	G	A	2.660e^-4	0.936	DOWNSTREAM SrpRbeta INTERGENIC
3L	11577043	3L_11577043_SNP [dm3] 3L_11583943_SNP [dm6]	T	G	2.665e^-4	0.936	NON_SYNONYMOUS_CODING CG32086 DOWNSTREAM rt
2L	16958010	2L_16958010_SNP [dm3] 2L_16958010_SNP [dm6]	A	G	2.667e^-4	0.936	INTERGENIC
2L	7202011	2L_7202011_SNP [dm3] 2L_7202011_SNP [dm6]	G	A	2.680e^-4	0.936	INTRON CG4502
3R	6105689	3R_6105689_SNP [dm3] 3R_10279967_SNP [dm6]	G	A	2.683e^-4	0.936	INTRON CG43143
2R	14978893	2R_14978893_SNP [dm3] 2R_19091388_SNP [dm6]	C	T	2.683e^-4	0.936	SYNONYMOUS_CODING 5-HT1A
3L	17624822	3L_17624822_SNP [dm3] 3L_17631722_SNP [dm6]	G	C	2.698e^-4	0.936	DOWNSTREAM CG7510 EXON CR44566
2R	13511055	2R_13511055_SNP [dm3] 2R_17623550_SNP [dm6]	A	G	2.701e^-4	0.936	INTRON CG10936
2L	8873046	2L_8873046_SNP [dm3] 2L_8873046_SNP [dm6]	C	A	2.703e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10893847	2L_10893847_SNP [dm3] 2L_10893847_SNP [dm6]	A	T	2.715e^-4	0.936	DOWNSTREAM CR44491 INTERGENIC
X	12794500	X_12794500_SNP [dm3] X_12900467_SNP [dm6]	G	A	2.723e^-4	0.936	SYNONYMOUS_CODING CG32649 DOWNSTREAM CG4407	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	11813827	2R_11813827_SNP [dm3] 2R_15926322_SNP [dm6]	G	A	2.738e^-4	0.936	NON_SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad
2L	7201933	2L_7201933_SNP [dm3] 2L_7201933_SNP [dm6]	T	A	2.744e^-4	0.936	INTRON CG4502
2R	19533244	2R_19533244_SNP [dm3] 2R_23645721_SNP [dm6]	G	A	2.746e^-4	0.936	UPSTREAM retn INTRON retn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	16289150	2R_16289150_SNP [dm3] 2R_20401645_SNP [dm6]	G	A	2.758e^-4	0.936	INTERGENIC
3R	13279793	3R_13279793_SNP [dm3] 3R_17454071_SNP [dm6]	T	G	2.764e^-4	0.936	INTERGENIC
3L	18384054	3L_18384054_SNP [dm3] 3L_18390954_SNP [dm6]	T	G	2.772e^-4	0.936	INTERGENIC
3R	14515011	3R_14515011_SNP [dm3] 3R_18689289_SNP [dm6]	G	A	2.792e^-4	0.936	NON_SYNONYMOUS_CODING Muc91C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20124067	3L_20124067_SNP [dm3] 3L_20130967_SNP [dm6]	T	A	2.797e^-4	0.936	SYNONYMOUS_CODING obst-J INTRON gig	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11789578	3L_11789578_SNP [dm3] 3L_11796478_SNP [dm6]	G	A	2.811e^-4	0.936	SYNONYMOUS_CODING Klp68D	TF binding site mE1_TFBS_sens
2L	19241897	2L_19241897_SNP [dm3] 2L_19241897_SNP [dm6]	A	G	2.819e^-4	0.936	INTERGENIC
3L	13916681	3L_13916681_DEL [dm3] 3L_13923581_DEL [dm6]	AA	A	2.820e^-4	0.936	INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	16389413	2R_16389413_SNP [dm3] 2R_20501908_SNP [dm6]	T	A	2.830e^-4	0.936	INTERGENIC	regulatory region REDfly_CRMs
2R	13621587	2R_13621587_SNP [dm3] 2R_17734082_SNP [dm6]	G	A	2.830e^-4	0.936	SYNONYMOUS_CODING CG34195 DOWNSTREAM CG6406	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	4901645	3R_4901645_SNP [dm3] 3R_9075923_SNP [dm6]	A	C	2.838e^-4	0.936	INTRON pum
2L	14788353	2L_14788353_SNP [dm3] 2L_14788353_SNP [dm6]	C	A	2.841e^-4	0.936	INTERGENIC
3L	2645600	3L_2645600_SNP [dm3] 3L_2645600_SNP [dm6]	A	T	2.841e^-4	0.936	INTRON CG1143	TF binding site mE1_TFBS_cad
3L	11599845	3L_11599845_SNP [dm3] 3L_11606745_SNP [dm6]	T	C	2.851e^-4	0.936	SYNONYMOUS_CODING CG6091
2L	9998779	2L_9998779_SNP [dm3] 2L_9998779_SNP [dm6]	T	C	2.856e^-4	0.936	NON_SYNONYMOUS_CODING SoYb INTRON CG31875	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3207563	2R_3207563_SNP [dm3] 2R_7320058_SNP [dm6]	A	G	2.858e^-4	0.936	UTR_3_PRIME Dscam1
3R	3246221	3R_3246221_SNP [dm3] 3R_7420499_SNP [dm6]	C	T	2.860e^-4	0.936	NON_SYNONYMOUS_CODING CG34023 UPSTREAM wa-cup DOWNSTREAM CG31544
3R	7321697	3R_7321697_SNP [dm3] 3R_11495975_SNP [dm6]	C	T	2.861e^-4	0.936	INTERGENIC
3L	3657121	3L_3657121_SNP [dm3] 3L_3657121_SNP [dm6]	G	T	2.873e^-4	0.936	INTERGENIC
3L	4164481	3L_4164481_SNP [dm3] 3L_4164481_SNP [dm6]	A	T	2.876e^-4	0.936	SYNONYMOUS_CODING mas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19230601	2L_19230601_SNP [dm3] 2L_19230601_SNP [dm6]	G	T	2.882e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	2.885e^-4	0.936	EXON CR44950
2R	13621585	2R_13621585_SNP [dm3] 2R_17734080_SNP [dm6]	G	T	2.910e^-4	0.936	NON_SYNONYMOUS_CODING CG34195 DOWNSTREAM CG6406	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	12571201	3L_12571201_DEL [dm3] 3L_12578101_DEL [dm6]	AGAAATATTAGGAATAGGCT...	A	2.914e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9147155	2R_9147155_SNP [dm3] 2R_13259650_SNP [dm6]	A	T	2.915e^-4	0.936	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3L	6100268	3L_6100268_SNP [dm3] 3L_6107168_SNP [dm6]	G	C	2.921e^-4	0.936	INTRON Ets65A	TF binding site mE1_TFBS_cad
3R	4400876	3R_4400876_INS [dm3] 3R_8575154_INS [dm6]	T	TT	2.938e^-4	0.936	INTERGENIC
2R	10544277	2R_10544277_SNP [dm3] 2R_14656772_SNP [dm6]	C	T	2.939e^-4	0.936	DOWNSTREAM Adgf-E INTERGENIC
3L	11650677	3L_11650677_SNP [dm3] 3L_11657577_SNP [dm6]	G	T	2.944e^-4	0.936	DOWNSTREAM mir-274 INTRON CG32085
2L	2865436	2L_2865436_SNP [dm3] 2L_2865436_SNP [dm6]	C	A	2.946e^-4	0.936	INTRON CG2991	TF binding site BDTNP1_TFBS_da
2R	9131331	2R_9131331_SNP [dm3] 2R_13243826_SNP [dm6]	A	C	2.952e^-4	0.936	DOWNSTREAM CR45278 INTERGENIC
3L	20176231	3L_20176231_SNP [dm3] 3L_20183131_SNP [dm6]	T	A	2.953e^-4	0.936	INTRON CG42674	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	20117364	3L_20117364_SNP [dm3] 3L_20124264_SNP [dm6]	A	C	2.954e^-4	0.936	DOWNSTREAM CG7365 INTERGENIC
3L	4511550	3L_4511550_SNP [dm3] 3L_4511550_SNP [dm6]	A	C	2.957e^-4	0.936	INTRON Tie
3L	17405028	3L_17405028_SNP [dm3] 3L_17411928_SNP [dm6]	C	T	2.966e^-4	0.936	INTRON blot
2L	7202010	2L_7202010_SNP [dm3] 2L_7202010_SNP [dm6]	C	T	2.966e^-4	0.936	INTRON CG4502
3R	16501566	3R_16501566_SNP [dm3] 3R_20675844_SNP [dm6]	G	T	2.980e^-4	0.936	DOWNSTREAM CG4000 INTERGENIC
X	8246042	X_8246042_DEL [dm3] X_8352009_DEL [dm6]	ACA	A	2.985e^-4	0.936	INTRON nAChRalpha3
3R	17319760	3R_17319760_SNP [dm3] 3R_21494038_SNP [dm6]	C	A	2.991e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6253185	3R_6253185_SNP [dm3] 3R_10427463_SNP [dm6]	G	C	2.994e^-4	0.936	INTERGENIC
3L	1042784	3L_1042784_SNP [dm3] 3L_1042784_SNP [dm6]	G	A	3.005e^-4	0.936	INTRON bab1
3L	8711560	3L_8711560_SNP [dm3] 3L_8718460_SNP [dm6]	G	A	3.009e^-4	0.936	DOWNSTREAM SrpRbeta INTERGENIC
3L	8711562	3L_8711562_SNP [dm3] 3L_8718462_SNP [dm6]	A	T	3.009e^-4	0.936	DOWNSTREAM SrpRbeta INTERGENIC
3L	8711570	3L_8711570_SNP [dm3] 3L_8718470_SNP [dm6]	T	A	3.009e^-4	0.936	DOWNSTREAM SrpRbeta INTERGENIC
2L	12415207	2L_12415207_SNP [dm3] 2L_12415207_SNP [dm6]	A	G	3.016e^-4	0.936	INTRON vir-1
3R	8138418	3R_8138418_SNP [dm3] 3R_12312696_SNP [dm6]	T	C	3.017e^-4	0.936	SYNONYMOUS_CODING CG4066	TF binding site mE1_TFBS_sens
3R	25799122	3R_25799122_SNP [dm3] 3R_29973400_SNP [dm6]	G	C	3.018e^-4	0.936	INTERGENIC
X	10895007	X_10895007_SNP [dm3] X_11000974_SNP [dm6]	A	G	3.018e^-4	0.936	INTRON CG42339
3R	22615421	3R_22615421_SNP [dm3] 3R_26789699_SNP [dm6]	T	A	3.023e^-4	0.936	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	20252359	2R_20252359_SNP [dm3] 2R_24364836_SNP [dm6]	C	T	3.028e^-4	0.936	INTRON bs & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23480670	3R_23480670_SNP [dm3] 3R_27654948_SNP [dm6]	G	T	3.047e^-4	0.936	INTRON tau
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	3.050e^-4	0.936	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9699895	X_9699895_SNP [dm3] X_9805862_SNP [dm6]	C	G	3.055e^-4	0.936	INTRON CG32698
3L	8487733	3L_8487733_SNP [dm3] 3L_8494633_SNP [dm6]	G	A	3.056e^-4	0.936	INTRON CG43163
3L	4152861	3L_4152861_SNP [dm3] 3L_4152861_SNP [dm6]	G	A	3.070e^-4	0.936	DOWNSTREAM CG1299 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2611205	3L_2611205_SNP [dm3] 3L_2611205_SNP [dm6]	T	A	3.076e^-4	0.936	INTRON Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	3469607	3R_3469607_SNP [dm3] 3R_7643885_SNP [dm6]	C	T	3.077e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20721357	2L_20721357_SNP [dm3] 2L_20721357_SNP [dm6]	A	C	3.079e^-4	0.936	UPSTREAM CR45306 INTERGENIC
3R	3200024	3R_3200024_SNP [dm3] 3R_7374302_SNP [dm6]	C	A	3.083e^-4	0.936	INTERGENIC
3L	18346603	3L_18346603_SNP [dm3] 3L_18353503_SNP [dm6]	G	T	3.089e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	2865802	2L_2865802_SNP [dm3] 2L_2865802_SNP [dm6]	T	C	3.103e^-4	0.936	INTRON CG2991
2L	7025296	2L_7025296_SNP [dm3] 2L_7025296_SNP [dm6]	C	A	3.103e^-4	0.936	NON_SYNONYMOUS_CODING CG31908	TF binding site mE1_TFBS_cad
3L	13310278	3L_13310278_SNP [dm3] 3L_13317178_SNP [dm6]	C	G	3.104e^-4	0.936	INTERGENIC
2R	6655401	2R_6655401_SNP [dm3] 2R_10767896_SNP [dm6]	T	A	3.120e^-4	0.936	INTRON CG33144
2R	11327929	2R_11327929_SNP [dm3] 2R_15440424_SNP [dm6]	G	T	3.124e^-4	0.936	INTRON CG43729
2L	10236531	2L_10236531_SNP [dm3] 2L_10236531_SNP [dm6]	G	A	3.127e^-4	0.936	SYNONYMOUS_CODING mthl15	TF binding site BDTNP1_TFBS_twi
2R	13502624	2R_13502624_SNP [dm3] 2R_17615119_SNP [dm6]	G	A	3.129e^-4	0.936	SYNONYMOUS_CODING CG10936	TF binding site mE1_TFBS_inv
X	8647045	X_8647045_SNP [dm3] X_8753012_SNP [dm6]	A	G	3.138e^-4	0.936	INTERGENIC
3R	3253101	3R_3253101_INS [dm3] 3R_7427379_INS [dm6]	T	TACGTTAAATTTAAT...	3.141e^-4	0.936	INTERGENIC
3R	21014655	3R_21014655_SNP [dm3] 3R_25188933_SNP [dm6]	G	A	3.146e^-4	0.936	INTRON lobo & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	20538018	2L_20538018_SNP [dm3] 2L_20538018_SNP [dm6]	C	T	3.146e^-4	0.936	INTERGENIC	TF binding site mE1_TFBS_inv
X	12850971	X_12850971_SNP [dm3] X_12956938_SNP [dm6]	G	T	3.148e^-4	0.936	INTRON hec
3L	14913407	3L_14913407_SNP [dm3] 3L_14920307_SNP [dm6]	G	A	3.154e^-4	0.936	INTRON DCX-EMAP
3R	19264837	3R_19264837_DEL [dm3] 3R_23439115_DEL [dm6]	TT	T	3.156e^-4	0.936	INTRON CG4374
3L	11525398	3L_11525398_SNP [dm3] 3L_11532298_SNP [dm6]	C	T	3.160e^-4	0.936	INTRON Mob2
3R	13469687	3R_13469687_SNP [dm3] 3R_17643965_SNP [dm6]	C	A	3.160e^-4	0.936	UPSTREAM CG43175 INTRON CG43175
3R	25351951	3R_25351951_SNP [dm3] 3R_29526229_SNP [dm6]	C	A	3.163e^-4	0.936	INTERGENIC	TF binding site mE1_TFBS_inv
X	16434149	X_16434149_SNP [dm3] X_16540116_SNP [dm6]	A	C	3.167e^-4	0.936	SYNONYMOUS_CODING CG9903	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	22040275	X_22040275_SNP [dm3] X_22638439_SNP [dm6]	G	C	3.174e^-4	0.936	INTERGENIC	transposable element FlyBase
2L	13152778	2L_13152778_SNP [dm3] 2L_13152778_SNP [dm6]	A	G	3.177e^-4	0.936	INTERGENIC
3L	1561196	3L_1561196_SNP [dm3] 3L_1561196_SNP [dm6]	G	T	3.181e^-4	0.936	NON_SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	13094958	3R_13094958_SNP [dm3] 3R_17269236_SNP [dm6]	C	T	3.184e^-4	0.936	INTERGENIC
2L	18287092	2L_18287092_SNP [dm3] 2L_18287092_SNP [dm6]	T	C	3.184e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	2860427	3R_2860427_SNP [dm3] 3R_7034705_SNP [dm6]	C	T	3.188e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3006186	3L_3006186_SNP [dm3] 3L_3006186_SNP [dm6]	G	A	3.194e^-4	0.936	INTRON FMRFaR
3L	1103352	3L_1103352_INS [dm3] 3L_1103352_INS [dm6]	T	TGTAT	3.200e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	7100166	3L_7100166_SNP [dm3] 3L_7107066_SNP [dm6]	A	G	3.201e^-4	0.936	INTRON form3
3L	7072423	3L_7072423_SNP [dm3] 3L_7079323_SNP [dm6]	C	A	3.202e^-4	0.936	INTERGENIC
X	15135061	X_15135061_SNP [dm3] X_15241028_SNP [dm6]	G	C	3.217e^-4	0.936	INTERGENIC
3R	15325922	3R_15325922_INS [dm3] 3R_19500200_INS [dm6]	A	AGATTCTTCTTAAA...	3.220e^-4	0.936	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10293295	3L_10293295_SNP [dm3] 3L_10300195_SNP [dm6]	A	T	3.222e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	9297592	3R_9297592_SNP [dm3] 3R_13471870_SNP [dm6]	T	C	3.243e^-4	0.936	INTERGENIC
2R	3255635	2R_3255635_SNP [dm3] 2R_7368130_SNP [dm6]	A	G	3.253e^-4	0.936	INTRON Dscam1
3R	3224581	3R_3224581_SNP [dm3] 3R_7398859_SNP [dm6]	G	C	3.257e^-4	0.936	INTERGENIC
3L	11587676	3L_11587676_DEL [dm3] 3L_11594576_DEL [dm6]	GT	G	3.266e^-4	0.936	UPSTREAM CR45671 & 1 other INTERGENIC
3L	11650766	3L_11650766_SNP [dm3] 3L_11657666_SNP [dm6]	C	T	3.287e^-4	0.936	DOWNSTREAM mir-274 INTRON CG32085
3R	3286395	3R_3286395_SNP [dm3] 3R_7460673_SNP [dm6]	C	G	3.294e^-4	0.936	INTERGENIC
3R	13139524	3R_13139524_SNP [dm3] 3R_17313802_SNP [dm6]	G	T	3.304e^-4	0.936	INTERGENIC
3L	14905152	3L_14905152_SNP [dm3] 3L_14912052_SNP [dm6]	C	T	3.312e^-4	0.936	INTRON DCX-EMAP
3R	13565050	3R_13565050_SNP [dm3] 3R_17739328_SNP [dm6]	T	A	3.333e^-4	0.936	UPSTREAM TyrRII INTRON TyrRII
2L	17354888	2L_17354888_SNP [dm3] 2L_17354888_SNP [dm6]	T	C	3.342e^-4	0.936	UPSTREAM CR43239 EXON CR44345
3R	15340755	3R_15340755_SNP [dm3] 3R_19515033_SNP [dm6]	A	G	3.348e^-4	0.936	INTRON Dys
X	18430662	X_18430662_SNP [dm3] X_18536629_SNP [dm6]	G	A	3.350e^-4	0.936	INTRON Bx
2R	11853628	2R_11853628_SNP [dm3] 2R_15966123_SNP [dm6]	G	A	3.351e^-4	0.936	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7452392	2L_7452392_SNP [dm3] 2L_7452392_SNP [dm6]	A	G	3.351e^-4	0.936	DOWNSTREAM Gr28a INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
2L	9463855	2L_9463855_SNP [dm3] 2L_9463855_SNP [dm6]	C	T	3.364e^-4	0.936	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_kn
3L	3103931	3L_3103931_SNP [dm3] 3L_3103931_SNP [dm6]	T	C	3.379e^-4	0.936	INTRON Cht7
2R	17028570	2R_17028570_SNP [dm3] 2R_21141065_SNP [dm6]	T	G	3.387e^-4	0.936	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	8405227	X_8405227_SNP [dm3] X_8511194_SNP [dm6]	C	G	3.392e^-4	0.936	UTR_5_PRIME CG33181 INTRON CG33181	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11791572	3L_11791572_SNP [dm3] 3L_11798472_SNP [dm6]	A	C	3.393e^-4	0.936	UTR_3_PRIME Klp68D DOWNSTREAM CG10361
2R	3079481	2R_3079481_SNP [dm3] 2R_7191976_SNP [dm6]	T	G	3.396e^-4	0.936	INTRON pk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10646121	2L_10646121_DEL [dm3] 2L_10646121_DEL [dm6]	CTCCCT	GAA	3.400e^-4	0.936	UPSTREAM CG17097 DOWNSTREAM CG18284 INTERGENIC
3L	18663271	3L_18663271_SNP [dm3] 3L_18670171_SNP [dm6]	T	C	3.413e^-4	0.936	SYNONYMOUS_CODING Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	17550085	2R_17550085_SNP [dm3] 2R_21662580_SNP [dm6]	C	G	3.419e^-4	0.936	UPSTREAM CR44748 & 1 other INTRON pirk
2L	7327633	2L_7327633_SNP [dm3] 2L_7327633_SNP [dm6]	C	T	3.419e^-4	0.936	INTERGENIC
2R	14421881	2R_14421881_SNP [dm3] 2R_18534376_SNP [dm6]	G	A	3.431e^-4	0.936	SYNONYMOUS_CODING CG10924	TF binding site mE1_TFBS_chinmo
2L	1231977	2L_1231977_SNP [dm3] 2L_1231977_SNP [dm6]	T	C	3.437e^-4	0.936	INTERGENIC
3R	14303875	3R_14303875_SNP [dm3] 3R_18478153_SNP [dm6]	G	A	3.438e^-4	0.936	START_GAINED fru UTR_5_PRIME fru INTRON fru
X	16129663	X_16129663_SNP [dm3] X_16235630_SNP [dm6]	G	A	3.447e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	14313189	3L_14313189_SNP [dm3] 3L_14320089_SNP [dm6]	A	G	3.455e^-4	0.936	INTRON fz
3R	16890622	3R_16890622_SNP [dm3] 3R_21064900_SNP [dm6]	G	A	3.457e^-4	0.936	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3R	3408950	3R_3408950_SNP [dm3] 3R_7583228_SNP [dm6]	A	C	3.473e^-4	0.936	INTRON CG34127
2L	17036026	2L_17036026_SNP [dm3] 2L_17036026_SNP [dm6]	G	A	3.473e^-4	0.936	INTERGENIC
X	22040200	X_22040200_INS [dm3] X_22638364_INS [dm6]	A	AAA	3.477e^-4	0.936	INTERGENIC	transposable element FlyBase
3R	24411738	3R_24411738_SNP [dm3] 3R_28586016_SNP [dm6]	C	T	3.481e^-4	0.936	UPSTREAM MRE23 & 1 other INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	4953916	2R_4953916_SNP [dm3] 2R_9066411_SNP [dm6]	G	T	3.481e^-4	0.936	INTRON ana	regulatory region REDfly_CRMs
2R	12289656	2R_12289656_SNP [dm3] 2R_16402151_SNP [dm6]	T	C	3.482e^-4	0.936	INTRON Sema-2b
3R	14394669	3R_14394669_SNP [dm3] 3R_18568947_SNP [dm6]	T	C	3.488e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9694478	3L_9694478_SNP [dm3] 3L_9701378_SNP [dm6]	A	G	3.494e^-4	0.936	DOWNSTREAM UbcD4 INTRON CG6761	TF binding site mE1_TFBS_cad
2L	21883243	2L_21883243_SNP [dm3] 2L_21883243_SNP [dm6]	A	T	3.496e^-4	0.936	INTERGENIC
3R	20509028	3R_20509028_SNP [dm3] 3R_24683306_SNP [dm6]	T	A	3.497e^-4	0.936	INTRON slo
X	9651224	X_9651224_SNP [dm3] X_9757191_SNP [dm6]	A	C	3.502e^-4	0.936	DOWNSTREAM Sp1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3376190	X_3376190_SNP [dm3] X_3482157_SNP [dm6]	A	G	3.507e^-4	0.936	UTR_5_PRIME CG10804 UPSTREAM CG10802 INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	11724908	2R_11724908_SNP [dm3] 2R_15837403_SNP [dm6]	C	T	3.512e^-4	0.936	INTRON tun	regulatory region REDfly_CRMs
X	19871357	X_19871357_SNP [dm3] X_19977324_SNP [dm6]	C	A	3.512e^-4	0.936	INTERGENIC
X	12665890	X_12665890_SNP [dm3] X_12771857_SNP [dm6]	C	G	3.512e^-4	0.936	UTR_3_PRIME CG3812 & 1 other DOWNSTREAM CG3812
2R	13195904	2R_13195904_SNP [dm3] 2R_17308399_SNP [dm6]	G	A	3.513e^-4	0.936	INTRON mbl
3L	14931260	3L_14931260_SNP [dm3] 3L_14938160_SNP [dm6]	G	C	3.517e^-4	0.936	INTRON DCX-EMAP
3L	12134721	3L_12134721_SNP [dm3] 3L_12141621_SNP [dm6]	C	G	3.523e^-4	0.936	NON_SYNONYMOUS_CODING RhoGAP68F
3L	12162991	3L_12162991_SNP [dm3] 3L_12169891_SNP [dm6]	C	G	3.530e^-4	0.936	INTRON Rh7
2L	3832016	2L_3832016_SNP [dm3] 2L_3832016_SNP [dm6]	G	A	3.531e^-4	0.936	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE
3L	14905173	3L_14905173_SNP [dm3] 3L_14912073_SNP [dm6]	T	A	3.532e^-4	0.936	INTRON DCX-EMAP
2R	15794516	2R_15794516_SNP [dm3] 2R_19907011_SNP [dm6]	A	G	3.534e^-4	0.936	INTERGENIC
2L	10672200	2L_10672200_SNP [dm3] 2L_10672200_SNP [dm6]	T	A	3.537e^-4	0.936	DOWNSTREAM CG31871 INTERGENIC
2R	11530595	2R_11530595_SNP [dm3] 2R_15643090_SNP [dm6]	T	A	3.538e^-4	0.936	INTRON CG42524
2R	11251034	2R_11251034_INS [dm3] 2R_15363529_INS [dm6]	A	ATA	3.543e^-4	0.936	INTRON unc-5
2L	12676943	2L_12676943_SNP [dm3] 2L_12676943_SNP [dm6]	A	T	3.545e^-4	0.936	INTRON pdm2	TF binding site BDTNP1_TFBS_dl
3L	3306863	3L_3306863_SNP [dm3] 3L_3306863_SNP [dm6]	C	T	3.546e^-4	0.936	INTRON ZnT63C	TF binding site BDTNP1_TFBS_dl
2R	18776196	2R_18776196_SNP [dm3] 2R_22888673_SNP [dm6]	C	T	3.548e^-4	0.936	SYNONYMOUS_CODING Gmer UPSTREAM MED23	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2280028	2L_2280028_SNP [dm3] 2L_2280028_SNP [dm6]	A	G	3.550e^-4	0.936	UPSTREAM CR43753 INTERGENIC
3L	11277473	3L_11277473_SNP [dm3] 3L_11284373_SNP [dm6]	G	A	3.556e^-4	0.936	UPSTREAM CR45404 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	14097828	2R_14097828_SNP [dm3] 2R_18210323_SNP [dm6]	C	A	3.572e^-4	0.936	EXON CR45147	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	3948645	3R_3948645_SNP [dm3] 3R_8122923_SNP [dm6]	C	T	3.579e^-4	0.936	NON_SYNONYMOUS_CODING CG7878 DOWNSTREAM puc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	20936762	X_20936762_SNP [dm3] X_21065735_SNP [dm6]	G	A	3.583e^-4	0.936	INTRON bves & 1 other
3R	20225939	3R_20225939_SNP [dm3] 3R_24400217_SNP [dm6]	G	T	3.584e^-4	0.936	UTR_3_PRIME nAChRalpha1 DOWNSTREAM nAChRalpha1
3L	11146537	3L_11146537_SNP [dm3] 3L_11153437_SNP [dm6]	G	T	3.595e^-4	0.936	INTRON CG32082
3R	13570378	3R_13570378_SNP [dm3] 3R_17744656_SNP [dm6]	G	C	3.600e^-4	0.936	INTRON TyrRII	TF binding site mE1_TFBS_cad
3R	9306665	3R_9306665_SNP [dm3] 3R_13480943_SNP [dm6]	A	G	3.606e^-4	0.936	INTERGENIC
X	19871594	X_19871594_INS [dm3] X_19977561_INS [dm6]	A	AC	3.616e^-4	0.936	INTERGENIC
3R	19239786	3R_19239786_SNP [dm3] 3R_23414064_SNP [dm6]	T	C	3.617e^-4	0.936	INTRON CG4374
2L	6398352	2L_6398352_SNP [dm3] 2L_6398352_SNP [dm6]	G	T	3.623e^-4	0.936	INTRON CG42368
3L	14370112	3L_14370112_SNP [dm3] 3L_14377012_SNP [dm6]	C	A	3.629e^-4	0.936	INTERGENIC
2L	18376210	2L_18376210_SNP [dm3] 2L_18376210_SNP [dm6]	C	T	3.650e^-4	0.936	INTRON Fas3
2R	9131360	2R_9131360_SNP [dm3] 2R_13243855_SNP [dm6]	C	T	3.652e^-4	0.936	DOWNSTREAM CR45278 INTERGENIC
3L	13549577	3L_13549577_SNP [dm3] 3L_13556477_SNP [dm6]	G	A	3.655e^-4	0.936	INTRON bru-3
2R	6559077	2R_6559077_SNP [dm3] 2R_10671572_SNP [dm6]	C	T	3.659e^-4	0.936	INTERGENIC
2R	9131332	2R_9131332_SNP [dm3] 2R_13243827_SNP [dm6]	G	T	3.661e^-4	0.936	DOWNSTREAM CR45278 INTERGENIC
2L	9443434	2L_9443434_SNP [dm3] 2L_9443434_SNP [dm6]	C	T	3.662e^-4	0.936	INTRON numb
2L	18376026	2L_18376026_SNP [dm3] 2L_18376026_SNP [dm6]	C	A	3.666e^-4	0.936	INTRON Fas3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7015713	3L_7015713_SNP [dm3] 3L_7022613_SNP [dm6]	G	A	3.670e^-4	0.936	INTRON Mp
2R	10991461	2R_10991461_SNP [dm3] 2R_15103956_SNP [dm6]	C	G	3.679e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	13570452	3R_13570452_SNP [dm3] 3R_17744730_SNP [dm6]	C	T	3.680e^-4	0.936	INTRON TyrRII
3L	22051921	3L_22051921_SNP [dm3] 3L_22058821_SNP [dm6]	C	A	3.680e^-4	0.936	INTRON Oct-TyrR
2L	4028101	2L_4028101_SNP [dm3] 2L_4028101_SNP [dm6]	A	G	3.681e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	6215124	X_6215124_SNP [dm3] X_6321091_SNP [dm6]	T	A	3.698e^-4	0.936	INTRON CG15894
3R	5083335	3R_5083335_SNP [dm3] 3R_9257613_SNP [dm6]	T	A	3.717e^-4	0.936	SYNONYMOUS_CODING CG16736 DOWNSTREAM CG9740 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	8932124	2L_8932124_SNP [dm3] 2L_8932124_SNP [dm6]	C	A	3.726e^-4	0.936	UTR_3_PRIME CG34398 INTRON CG34398
2R	19825152	2R_19825152_SNP [dm3] 2R_23937629_SNP [dm6]	T	A	3.729e^-4	0.936	NON_SYNONYMOUS_CODING CG3735	TF binding site mE1_TFBS_sens
2R	18018014	2R_18018014_SNP [dm3] 2R_22130509_SNP [dm6]	C	T	3.732e^-4	0.936	SYNONYMOUS_CODING CG34205 DOWNSTREAM NtR	TF binding site mE1_TFBS_chinmo
3L	14711866	3L_14711866_SNP [dm3] 3L_14718766_SNP [dm6]	C	A	3.733e^-4	0.936	INTRON ome
2L	7147769	2L_7147769_SNP [dm3] 2L_7147769_SNP [dm6]	G	T	3.735e^-4	0.936	INTRON Pvf3	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	9422377	2R_9422377_SNP [dm3] 2R_13534872_SNP [dm6]	T	C	3.740e^-4	0.936	UPSTREAM Vmat INTERGENIC
2R	16253858	2R_16253858_SNP [dm3] 2R_20366353_SNP [dm6]	A	G	3.755e^-4	0.936	INTERGENIC
2L	12097475	2L_12097475_SNP [dm3] 2L_12097475_SNP [dm6]	T	G	3.756e^-4	0.936	NON_SYNONYMOUS_CODING Mt2 UPSTREAM CG6712 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	18748553	2R_18748553_SNP [dm3] 2R_22861030_SNP [dm6]	C	A	3.759e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	13055036	3R_13055036_SNP [dm3] 3R_17229314_SNP [dm6]	C	T	3.761e^-4	0.936	INTERGENIC
2R	11582501	2R_11582501_SNP [dm3] 2R_15694996_SNP [dm6]	G	C	3.762e^-4	0.936	SYNONYMOUS_CODING CG33460 UPSTREAM CG33461
3L	14393057	3L_14393057_SNP [dm3] 3L_14399957_SNP [dm6]	T	A	3.762e^-4	0.936	DOWNSTREAM CG3868 INTERGENIC
2R	18517227	2R_18517227_INS [dm3] 2R_22629722_INS [dm6]	C	CC	3.774e^-4	0.936	INTRON CG33143	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
X	8292944	X_8292944_SNP [dm3] X_8398911_SNP [dm6]	G	C	3.803e^-4	0.936	UPSTREAM CG10555 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20225930	3R_20225930_SNP [dm3] 3R_24400208_SNP [dm6]	C	G	3.805e^-4	0.936	UTR_3_PRIME nAChRalpha1 DOWNSTREAM nAChRalpha1
2L	12676926	2L_12676926_DEL [dm3] 2L_12676926_DEL [dm6]	TAAACGCACATAAATT...	T	3.811e^-4	0.936	INTRON pdm2	TF binding site BDTNP1_TFBS_dl
3L	11420912	3L_11420912_SNP [dm3] 3L_11427812_SNP [dm6]	A	C	3.815e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	15317387	3R_15317387_SNP [dm3] 3R_19491665_SNP [dm6]	A	T	3.817e^-4	0.936	UPSTREAM CG15025 INTRON Dys	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	14912654	2L_14912654_SNP [dm3] 2L_14912654_SNP [dm6]	G	T	3.835e^-4	0.936	INTRON CG42313
X	8402864	X_8402864_SNP [dm3] X_8508831_SNP [dm6]	C	G	3.839e^-4	0.936	UPSTREAM CG33181 INTRON CG33181
X	9651231	X_9651231_SNP [dm3] X_9757198_SNP [dm6]	G	C	3.839e^-4	0.936	DOWNSTREAM Sp1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12540349	2R_12540349_SNP [dm3] 2R_16652844_SNP [dm6]	T	C	3.851e^-4	0.936	UPSTREAM Amyrel DOWNSTREAM Nach INTERGENIC
3L	11408920	3L_11408920_INS [dm3] 3L_11415820_INS [dm6]	G	GATGGGT	3.852e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	14816170	3L_14816170_SNP [dm3] 3L_14823070_SNP [dm6]	A	T	3.853e^-4	0.936	INTRON CG17839
2R	18748554	2R_18748554_SNP [dm3] 2R_22861031_SNP [dm6]	A	T	3.853e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	15891156	2R_15891156_SNP [dm3] 2R_20003651_SNP [dm6]	T	C	3.854e^-4	0.936	UTR_3_PRIME CG16898
3R	2577503	3R_2577503_SNP [dm3] 3R_6751781_SNP [dm6]	T	A	3.855e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14077090	2R_14077090_SNP [dm3] 2R_18189585_SNP [dm6]	G	C	3.857e^-4	0.936	UTR_3_PRIME CG14500 INTRON CG33958
2L	16553993	2L_16553993_SNP [dm3] 2L_16553993_SNP [dm6]	G	C	3.857e^-4	0.936	INTRON CG42389
X	3377343	X_3377343_SNP [dm3] X_3483310_SNP [dm6]	A	C	3.858e^-4	0.936	SYNONYMOUS_CODING CG10802 UPSTREAM CG10804 INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	19512434	2R_19512434_SNP [dm3] 2R_23624911_SNP [dm6]	A	C	3.865e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	18494639	3R_18494639_SNP [dm3] 3R_22668917_SNP [dm6]	T	G	3.866e^-4	0.936	INTRON CG45058	TF binding site BDTNP1_TFBS_dl
X	3377141	X_3377141_SNP [dm3] X_3483108_SNP [dm6]	G	C	3.867e^-4	0.936	UPSTREAM CG10804 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	9377453	3L_9377453_SNP [dm3] 3L_9384353_SNP [dm6]	T	C	3.874e^-4	0.936	SYNONYMOUS_CODING Hsp27	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	18486575	2L_18486575_SNP [dm3] 2L_18486575_SNP [dm6]	C	T	3.875e^-4	0.936	INTRON CG10176	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	3198090	3R_3198090_SNP [dm3] 3R_7372368_SNP [dm6]	T	A	3.878e^-4	0.936	INTERGENIC
3R	18203987	3R_18203987_SNP [dm3] 3R_22378265_SNP [dm6]	T	A	3.879e^-4	0.936	SYNONYMOUS_CODING CG18596
3R	18204032	3R_18204032_SNP [dm3] 3R_22378310_SNP [dm6]	C	T	3.879e^-4	0.936	SYNONYMOUS_CODING CG18596
2R	11278216	2R_11278216_SNP [dm3] 2R_15390711_SNP [dm6]	T	C	3.884e^-4	0.936	INTERGENIC
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	3.895e^-4	0.936	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4539151	3L_4539151_SNP [dm3] 3L_4539151_SNP [dm6]	A	T	3.915e^-4	0.936	UTR_3_PRIME CG11353 DOWNSTREAM CG32243	TF binding site BDTNP1_TFBS_twi
3R	14090571	3R_14090571_SNP [dm3] 3R_18264849_SNP [dm6]	G	A	3.921e^-4	0.936	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	16305931	3L_16305931_SNP [dm3] 3L_16312831_SNP [dm6]	A	C	3.922e^-4	0.936	INTERGENIC
X	21458725	X_21458725_SNP [dm3] X_21587698_SNP [dm6]	T	C	3.926e^-4	0.936	INTERGENIC
2R	7961322	2R_7961322_SNP [dm3] 2R_12073817_SNP [dm6]	C	T	3.945e^-4	0.936	INTRON CG8888
2L	18901998	2L_18901998_SNP [dm3] 2L_18901998_SNP [dm6]	C	G	3.947e^-4	0.936	INTERGENIC
3R	13103400	3R_13103400_SNP [dm3] 3R_17277678_SNP [dm6]	A	G	3.951e^-4	0.936	INTERGENIC
3R	25026972	3R_25026972_SNP [dm3] 3R_29201250_SNP [dm6]	G	A	3.951e^-4	0.936	SYNONYMOUS_CODING CG11899 DOWNSTREAM Mesh1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13848508	2L_13848508_SNP [dm3] 2L_13848508_SNP [dm6]	T	C	3.960e^-4	0.936	SYNONYMOUS_CODING CG7953 UPSTREAM CG7968 DOWNSTREAM CG7916 INTRON CenG1A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14711854	3L_14711854_SNP [dm3] 3L_14718754_SNP [dm6]	C	T	3.960e^-4	0.936	INTRON ome
2L	14277446	2L_14277446_SNP [dm3] 2L_14277446_SNP [dm6]	A	T	3.963e^-4	0.936	UTR_5_PRIME CG32971 INTRON wb & 1 other
2L	16911121	2L_16911121_SNP [dm3] 2L_16911121_SNP [dm6]	T	C	3.967e^-4	0.936	SYNONYMOUS_CODING tweek UPSTREAM ApepP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15902238	2R_15902238_SNP [dm3] 2R_20014733_SNP [dm6]	A	G	3.970e^-4	0.936	DOWNSTREAM CR44629 INTERGENIC
3R	13118875	3R_13118875_SNP [dm3] 3R_17293153_SNP [dm6]	G	A	3.975e^-4	0.936	INTERGENIC
3L	11168327	3L_11168327_SNP [dm3] 3L_11175227_SNP [dm6]	C	A	3.976e^-4	0.936	INTRON CG14142
2L	17385515	2L_17385515_SNP [dm3] 2L_17385515_SNP [dm6]	T	A	3.976e^-4	0.936	UPSTREAM CLIP-190 INTRON CLIP-190	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Ubx
X	4966096	X_4966096_SNP [dm3] X_5072063_SNP [dm6]	G	A	3.977e^-4	0.936	UTR_3_PRIME CG32767
X	22009928	X_22009928_INS [dm3] X_22608092_INS [dm6]	T	TT	3.982e^-4	0.936	INTRON Cda4
X	12772793	X_12772793_SNP [dm3] X_12878760_SNP [dm6]	T	A	3.986e^-4	0.936	INTRON Pde9
3L	13424926	3L_13424926_SNP [dm3] 3L_13431826_SNP [dm6]	C	A	3.987e^-4	0.936	INTRON CG10713
3L	14376089	3L_14376089_SNP [dm3] 3L_14382989_SNP [dm6]	T	G	3.995e^-4	0.936	UTR_3_PRIME CG43120
2R	15892467	2R_15892467_SNP [dm3] 2R_20004962_SNP [dm6]	A	T	3.999e^-4	0.936	NON_SYNONYMOUS_CODING CG16898
2R	15892469	2R_15892469_INS [dm3] 2R_20004964_INS [dm6]	TGG	ACATT	3.999e^-4	0.936
3L	14561384	3L_14561384_SNP [dm3] 3L_14568284_SNP [dm6]	G	A	4.002e^-4	0.936	DOWNSTREAM CG42758 INTERGENIC
3L	6023720	3L_6023720_INS [dm3] 3L_6030620_INS [dm6]	TG	GAAGGA	4.010e^-4	0.936	INTERGENIC
3R	14394850	3R_14394850_SNP [dm3] 3R_18569128_SNP [dm6]	C	A	4.020e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12511480	3L_12511480_SNP [dm3] 3L_12518380_SNP [dm6]	A	T	4.023e^-4	0.936	INTRON tral	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3362739	3L_3362739_SNP [dm3] 3L_3362739_SNP [dm6]	A	T	4.028e^-4	0.936	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
3L	16232919	3L_16232919_SNP [dm3] 3L_16239819_SNP [dm6]	C	A	4.029e^-4	0.936	DOWNSTREAM l_3_72Dr INTERGENIC
X	10868903	X_10868903_SNP [dm3] X_10974870_SNP [dm6]	A	G	4.045e^-4	0.936	INTRON CG42339
2L	10085825	2L_10085825_SNP [dm3] 2L_10085825_SNP [dm6]	C	T	4.054e^-4	0.936	INTRON CG44153
3L	3103926	3L_3103926_SNP [dm3] 3L_3103926_SNP [dm6]	C	T	4.054e^-4	0.936	INTRON Cht7
2L	2249196	2L_2249196_SNP [dm3] 2L_2249196_SNP [dm6]	A	T	4.064e^-4	0.936	INTERGENIC
2R	5058655	2R_5058655_SNP [dm3] 2R_9171150_SNP [dm6]	A	G	4.067e^-4	0.936	SYNONYMOUS_CODING Rme-8	TF binding site mE1_TFBS_cad
2L	11509606	2L_11509606_SNP [dm3] 2L_11509606_SNP [dm6]	G	A	4.069e^-4	0.936	SYNONYMOUS_CODING CG6509 UTR_3_PRIME CG6509 DOWNSTREAM spz4
X	4981617	X_4981617_SNP [dm3] X_5087584_SNP [dm6]	A	T	4.078e^-4	0.936	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl
3R	13565054	3R_13565054_SNP [dm3] 3R_17739332_SNP [dm6]	A	G	4.079e^-4	0.936	UPSTREAM TyrRII INTRON TyrRII
2R	16708754	2R_16708754_SNP [dm3] 2R_20821249_SNP [dm6]	A	C	4.082e^-4	0.936	DOWNSTREAM insc INTERGENIC
3L	16867402	3L_16867402_SNP [dm3] 3L_16874302_SNP [dm6]	C	A	4.087e^-4	0.936	INTRON Lmpt
3L	14710885	3L_14710885_DEL [dm3] 3L_14717785_DEL [dm6]	GAAAAA	T	4.088e^-4	0.936	INTRON ome
2R	11785983	2R_11785983_SNP [dm3] 2R_15898478_SNP [dm6]	G	A	4.092e^-4	0.936	INTRON sli	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2865505	2L_2865505_SNP [dm3] 2L_2865505_SNP [dm6]	T	C	4.097e^-4	0.936	SYNONYMOUS_CODING CG2991	TF binding site BDTNP1_TFBS_da
3L	12147000	3L_12147000_SNP [dm3] 3L_12153900_SNP [dm6]	C	T	4.105e^-4	0.936	INTRON Nrx-IV
3L	4509513	3L_4509513_SNP [dm3] 3L_4509513_SNP [dm6]	C	A	4.115e^-4	0.936	INTERGENIC
3R	8138398	3R_8138398_SNP [dm3] 3R_12312676_SNP [dm6]	A	C	4.116e^-4	0.936	NON_SYNONYMOUS_CODING CG4066	TF binding site mE1_TFBS_sens
2R	12282055	2R_12282055_SNP [dm3] 2R_16394550_SNP [dm6]	G	A	4.117e^-4	0.936	INTRON Sema-2b
3L	9693993	3L_9693993_SNP [dm3] 3L_9700893_SNP [dm6]	C	G	4.119e^-4	0.936	SYNONYMOUS_CODING CG6761 DOWNSTREAM UbcD4	TF binding site mE1_TFBS_cad
2R	19306885	2R_19306885_SNP [dm3] 2R_23419362_SNP [dm6]	A	G	4.122e^-4	0.936	INTRON CG9812
2R	12544562	2R_12544562_SNP [dm3] 2R_16657057_SNP [dm6]	G	A	4.136e^-4	0.936	SYNONYMOUS_CODING Picot	TF binding site mE1_TFBS_cad
X	15413677	X_15413677_SNP [dm3] X_15519644_SNP [dm6]	C	G	4.143e^-4	0.936	INTRON Ac13E
3L	11649987	3L_11649987_SNP [dm3] 3L_11656887_SNP [dm6]	T	A	4.145e^-4	0.936	UPSTREAM mir-274 INTRON CG32085
3L	11649992	3L_11649992_SNP [dm3] 3L_11656892_SNP [dm6]	T	A	4.145e^-4	0.936	UPSTREAM mir-274 INTRON CG32085
3R	25026945	3R_25026945_SNP [dm3] 3R_29201223_SNP [dm6]	C	G	4.152e^-4	0.936	SYNONYMOUS_CODING CG11899 DOWNSTREAM Mesh1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2996204	3L_2996204_SNP [dm3] 3L_2996204_SNP [dm6]	G	C	4.156e^-4	0.936	DOWNSTREAM CG2113 INTERGENIC
2L	17385461	2L_17385461_SNP [dm3] 2L_17385461_SNP [dm6]	A	G	4.160e^-4	0.936	UTR_5_PRIME CLIP-190 UPSTREAM CLIP-190	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Ubx
3L	3206850	3L_3206850_SNP [dm3] 3L_3206850_SNP [dm6]	A	C	4.169e^-4	0.936	UPSTREAM CG33160 DOWNSTREAM CG32270 & 1 other INTRON gry
2R	17593717	2R_17593717_SNP [dm3] 2R_21706212_SNP [dm6]	G	A	4.174e^-4	0.936	INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	12077682	2R_12077682_SNP [dm3] 2R_16190177_SNP [dm6]	T	C	4.180e^-4	0.936	SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7119665	3R_7119665_SNP [dm3] 3R_11293943_SNP [dm6]	G	C	4.198e^-4	0.936	INTRON CR31386
3L	7080571	3L_7080571_SNP [dm3] 3L_7087471_SNP [dm6]	C	A	4.200e^-4	0.936	UPSTREAM Cpr65Ea DOWNSTREAM Cpr65Eb INTERGENIC	TF binding site mE1_TFBS_inv
3L	7303862	3L_7303862_SNP [dm3] 3L_7310762_SNP [dm6]	G	T	4.202e^-4	0.936	INTRON unc-13-4A
3L	15669063	3L_15669063_SNP [dm3] 3L_15675963_SNP [dm6]	T	A	4.210e^-4	0.936	INTERGENIC
3L	15669064	3L_15669064_SNP [dm3] 3L_15675964_SNP [dm6]	G	T	4.210e^-4	0.936	INTERGENIC
2L	13738456	2L_13738456_SNP [dm3] 2L_13738456_SNP [dm6]	G	A	4.229e^-4	0.936	INTERGENIC
3R	10435085	3R_10435085_SNP [dm3] 3R_14609363_SNP [dm6]	G	T	4.240e^-4	0.936	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	18730960	X_18730960_SNP [dm3] X_18836927_SNP [dm6]	A	T	4.242e^-4	0.936	INTRON Pvf1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11168322	3L_11168322_INS [dm3] 3L_11175222_INS [dm6]	T	TGGTGA	4.266e^-4	0.936	INTRON CG14142
3L	11168335	3L_11168335_INS [dm3] 3L_11175235_INS [dm6]	A	AAGT	4.266e^-4	0.936	INTRON CG14142	TF binding site mE1_TFBS_cad
X	10543723	X_10543723_SNP [dm3] X_10649690_SNP [dm6]	G	C	4.268e^-4	0.936	INTRON X11Lbeta
3R	13570542	3R_13570542_SNP [dm3] 3R_17744820_SNP [dm6]	G	A	4.274e^-4	0.936	INTRON TyrRII
3R	14394925	3R_14394925_SNP [dm3] 3R_18569203_SNP [dm6]	C	T	4.276e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2R	9422095	2R_9422095_SNP [dm3] 2R_13534590_SNP [dm6]	T	G	4.278e^-4	0.936	UPSTREAM Vmat INTERGENIC	TF binding site BDTNP1_TFBS_sna
2L	19233563	2L_19233563_SNP [dm3] 2L_19233563_SNP [dm6]	A	G	4.286e^-4	0.936	INTERGENIC
3R	25765336	3R_25765336_SNP [dm3] 3R_29939614_SNP [dm6]	T	C	4.297e^-4	0.936	SYNONYMOUS_CODING CG15523
3R	16598813	3R_16598813_SNP [dm3] 3R_20773091_SNP [dm6]	T	C	4.304e^-4	0.936	UPSTREAM Takl1 INTRON Syp	TF binding site BDTNP1_TFBS_twi
3L	13964497	3L_13964497_SNP [dm3] 3L_13971397_SNP [dm6]	C	T	4.310e^-4	0.936	INTRON ssp2 & 1 other
3L	1042781	3L_1042781_SNP [dm3] 3L_1042781_SNP [dm6]	T	C	4.313e^-4	0.936	INTRON bab1
2R	9486177	2R_9486177_SNP [dm3] 2R_13598672_SNP [dm6]	G	C	4.318e^-4	0.936	UTR_3_PRIME S-Lap5	TF binding site mE1_TFBS_cad
3R	10651802	3R_10651802_SNP [dm3] 3R_14826080_SNP [dm6]	T	C	4.324e^-4	0.936	SYNONYMOUS_CODING btsz
2R	9131354	2R_9131354_SNP [dm3] 2R_13243849_SNP [dm6]	G	A	4.340e^-4	0.936	DOWNSTREAM CR45278 INTERGENIC
3R	16706109	3R_16706109_SNP [dm3] 3R_20880387_SNP [dm6]	T	C	4.354e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	2683655	3L_2683655_SNP [dm3] 3L_2683655_SNP [dm6]	A	G	4.354e^-4	0.936	INTRON Fife
2L	18930447	2L_18930447_SNP [dm3] 2L_18930447_SNP [dm6]	G	A	4.362e^-4	0.936	INTRON ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15632450	3L_15632450_SNP [dm3] 3L_15639350_SNP [dm6]	A	G	4.365e^-4	0.936	INTRON comm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15632451	3L_15632451_SNP [dm3] 3L_15639351_SNP [dm6]	A	G	4.365e^-4	0.936	INTRON comm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2326365	2L_2326365_SNP [dm3] 2L_2326365_SNP [dm6]	G	A	4.366e^-4	0.936	INTRON CG9967 & 1 other
3L	8711590	3L_8711590_SNP [dm3] 3L_8718490_SNP [dm6]	T	A	4.378e^-4	0.936	DOWNSTREAM SrpRbeta INTERGENIC
3L	1103300	3L_1103300_SNP [dm3] 3L_1103300_SNP [dm6]	T	G	4.382e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	12508380	3L_12508380_SNP [dm3] 3L_12515280_SNP [dm6]	A	T	4.386e^-4	0.936	UTR_5_PRIME tral UPSTREAM sti & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
X	5507572	X_5507572_SNP [dm3] X_5613539_SNP [dm6]	G	A	4.390e^-4	0.936	SYNONYMOUS_CODING CG34435 DOWNSTREAM Vsx1	TF binding site mE1_TFBS_bab1
2L	14749049	2L_14749049_SNP [dm3] 2L_14749049_SNP [dm6]	T	A	4.390e^-4	0.936	INTERGENIC
3R	8486852	3R_8486852_SNP [dm3] 3R_12661130_SNP [dm6]	C	T	4.397e^-4	0.936	DOWNSTREAM CR45586 & 1 other INTERGENIC
3R	12274498	3R_12274498_SNP [dm3] 3R_16448776_SNP [dm6]	C	T	4.419e^-4	0.936	INTRON Pak3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15702571	3L_15702571_SNP [dm3] 3L_15709471_SNP [dm6]	A	C	4.424e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4509557	3L_4509557_SNP [dm3] 3L_4509557_SNP [dm6]	C	T	4.428e^-4	0.936	INTERGENIC
2R	3264528	2R_3264528_SNP [dm3] 2R_7377023_SNP [dm6]	C	T	4.428e^-4	0.936	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11653841	3L_11653841_SNP [dm3] 3L_11660741_SNP [dm6]	T	A	4.429e^-4	0.936	INTRON CG32085
3R	14623642	3R_14623642_SNP [dm3] 3R_18797920_SNP [dm6]	G	A	4.436e^-4	0.936	INTERGENIC
3L	11168337	3L_11168337_SNP [dm3] 3L_11175237_SNP [dm6]	A	T	4.445e^-4	0.936	INTRON CG14142	TF binding site mE1_TFBS_cad
3L	11168347	3L_11168347_INS [dm3] 3L_11175247_INS [dm6]	T	TG	4.445e^-4	0.936	INTRON CG14142	TF binding site mE1_TFBS_cad
3L	17405032	3L_17405032_SNP [dm3] 3L_17411932_SNP [dm6]	C	A	4.446e^-4	0.936	INTRON blot
3R	14616564	3R_14616564_SNP [dm3] 3R_18790842_SNP [dm6]	T	C	4.447e^-4	0.936	INTRON CG7720
2L	16957224	2L_16957224_SNP [dm3] 2L_16957224_SNP [dm6]	A	G	4.447e^-4	0.936	INTERGENIC
3L	4502470	3L_4502470_SNP [dm3] 3L_4502470_SNP [dm6]	T	C	4.454e^-4	0.936	NON_SYNONYMOUS_CODING NT1 SYNONYMOUS_CODING NT1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18328356	2L_18328356_SNP [dm3] 2L_18328356_SNP [dm6]	C	T	4.454e^-4	0.936	INTRON Fas3
2R	18748556	2R_18748556_SNP [dm3] 2R_22861033_SNP [dm6]	A	G	4.456e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	3471298	2R_3471298_SNP [dm3] 2R_7583793_SNP [dm6]	T	C	4.458e^-4	0.936	INTRON blow
3R	26700759	3R_26700759_SNP [dm3] 3R_30875037_SNP [dm6]	G	C	4.463e^-4	0.936	SYNONYMOUS_CODING CG15546	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	3204159	3R_3204159_SNP [dm3] 3R_7378437_SNP [dm6]	T	G	4.469e^-4	0.936	INTERGENIC
2L	20721350	2L_20721350_SNP [dm3] 2L_20721350_SNP [dm6]	A	G	4.473e^-4	0.936	UPSTREAM CR45306 INTERGENIC
3L	17579196	3L_17579196_SNP [dm3] 3L_17586096_SNP [dm6]	A	G	4.486e^-4	0.936	INTRON Eip74EF	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6653942	2R_6653942_SNP [dm3] 2R_10766437_SNP [dm6]	A	G	4.488e^-4	0.936	INTRON CG33144
X	19873291	X_19873291_INS [dm3] X_19979258_INS [dm6]	T	TTGATGT	4.491e^-4	0.936	INTERGENIC
3R	3221997	3R_3221997_SNP [dm3] 3R_7396275_SNP [dm6]	T	C	4.496e^-4	0.936	INTERGENIC
2R	18769483	2R_18769483_SNP [dm3] 2R_22881960_SNP [dm6]	A	G	4.497e^-4	0.936	DOWNSTREAM PIP5K59B & 1 other INTRON CG3501	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16890626	3R_16890626_SNP [dm3] 3R_21064904_SNP [dm6]	A	T	4.506e^-4	0.936	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
2R	17028512	2R_17028512_SNP [dm3] 2R_21141007_SNP [dm6]	A	C	4.522e^-4	0.936	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	12514813	3R_12514813_SNP [dm3] 3R_16689091_SNP [dm6]	T	A	4.522e^-4	0.936	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10590294	2L_10590294_SNP [dm3] 2L_10590294_SNP [dm6]	C	T	4.523e^-4	0.936	INTRON Trim9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	22841494	3L_22841494_SNP [dm3] 3L_22848394_SNP [dm6]	A	T	4.530e^-4	0.936	UPSTREAM tRNA:CR32460 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	6215054	X_6215054_SNP [dm3] X_6321021_SNP [dm6]	C	T	4.532e^-4	0.936	INTRON CG15894
3R	3962796	3R_3962796_SNP [dm3] 3R_8137074_SNP [dm6]	C	T	4.542e^-4	0.936	INTERGENIC
2L	8932166	2L_8932166_SNP [dm3] 2L_8932166_SNP [dm6]	T	A	4.543e^-4	0.936	UTR_3_PRIME CG34398 INTRON CG34398
X	19871464	X_19871464_SNP [dm3] X_19977431_SNP [dm6]	A	G	4.543e^-4	0.936	INTERGENIC
2L	7594851	2L_7594851_SNP [dm3] 2L_7594851_SNP [dm6]	C	T	4.546e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18769005	2R_18769005_SNP [dm3] 2R_22881482_SNP [dm6]	A	C	4.561e^-4	0.936	UTR_3_PRIME CG3501 DOWNSTREAM PIP5K59B	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
3L	8518875	3L_8518875_SNP [dm3] 3L_8525775_SNP [dm6]	A	G	4.561e^-4	0.936	UPSTREAM GstO1 INTRON foi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	2646789	3L_2646789_SNP [dm3] 3L_2646789_SNP [dm6]	T	G	4.561e^-4	0.936	UTR_3_PRIME CG1143 DOWNSTREAM CG1143
X	17503877	X_17503877_SNP [dm3] X_17609844_SNP [dm6]	G	T	4.565e^-4	0.936	INTERGENIC
3R	22501456	3R_22501456_SNP [dm3] 3R_26675734_SNP [dm6]	A	G	4.566e^-4	0.936	INTRON beat-VII
2L	7452410	2L_7452410_SNP [dm3] 2L_7452410_SNP [dm6]	A	G	4.568e^-4	0.936	DOWNSTREAM Gr28a INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3R	3200604	3R_3200604_SNP [dm3] 3R_7374882_SNP [dm6]	A	G	4.569e^-4	0.936	INTERGENIC
3R	14395022	3R_14395022_SNP [dm3] 3R_18569300_SNP [dm6]	G	A	4.569e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	15885771	3L_15885771_SNP [dm3] 3L_15892671_SNP [dm6]	A	G	4.586e^-4	0.936	INTRON pHCl
2R	12212097	2R_12212097_SNP [dm3] 2R_16324592_SNP [dm6]	C	T	4.591e^-4	0.936	UTR_3_PRIME CG4282 DOWNSTREAM Vha44
3R	3200613	3R_3200613_SNP [dm3] 3R_7374891_SNP [dm6]	T	G	4.592e^-4	0.936	INTERGENIC
2R	16875070	2R_16875070_SNP [dm3] 2R_20987565_SNP [dm6]	C	G	4.597e^-4	0.936	SYNONYMOUS_CODING CG3216	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17614425	3L_17614425_SNP [dm3] 3L_17621325_SNP [dm6]	G	A	4.603e^-4	0.936	SYNONYMOUS_CODING CG6259 UPSTREAM CG7510	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	3222033	3R_3222033_SNP [dm3] 3R_7396311_SNP [dm6]	C	T	4.605e^-4	0.936	INTERGENIC
3L	6753178	3L_6753178_SNP [dm3] 3L_6760078_SNP [dm6]	G	A	4.608e^-4	0.936	SYNONYMOUS_CODING CG32392 INTRON CG32392	TF binding site mE1_TFBS_cad
3L	3100248	3L_3100248_SNP [dm3] 3L_3100248_SNP [dm6]	C	T	4.609e^-4	0.936	INTRON Cht7
3L	12879790	3L_12879790_SNP [dm3] 3L_12886690_SNP [dm6]	T	C	4.612e^-4	0.936	NON_SYNONYMOUS_CODING CG14120	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9770301	2L_9770301_SNP [dm3] 2L_9770301_SNP [dm6]	A	T	4.614e^-4	0.936	SYNONYMOUS_CODING CG17633 DOWNSTREAM ppk16 INTRON ppk18	TF binding site mE1_TFBS_cad
3L	460756	3L_460756_SNP [dm3] 3L_460756_SNP [dm6]	C	T	4.614e^-4	0.936	INTRON klar
3R	17953466	3R_17953466_SNP [dm3] 3R_22127744_SNP [dm6]	C	A	4.620e^-4	0.936	INTRON CG42390
3R	20396321	3R_20396321_SNP [dm3] 3R_24570599_SNP [dm6]	T	A	4.620e^-4	0.936	INTRON CG13624
3L	18262442	3L_18262442_SNP [dm3] 3L_18269342_SNP [dm6]	A	G	4.623e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	15084985	2L_15084985_SNP [dm3] 2L_15084985_SNP [dm6]	A	T	4.628e^-4	0.936	INTRON CG15270
2R	9147010	2R_9147010_SNP [dm3] 2R_13259505_SNP [dm6]	T	G	4.634e^-4	0.936	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
X	1162897	X_1162897_SNP [dm3] X_1268864_SNP [dm6]	G	A	4.638e^-4	0.936	INTRON Atf3
3L	21602306	3L_21602306_SNP [dm3] 3L_21609206_SNP [dm6]	A	C	4.651e^-4	0.936	INTRON TfAP-2
2L	1644494	2L_1644494_SNP [dm3] 2L_1644494_SNP [dm6]	G	T	4.652e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ftz_f1 mE1_TFBS_HSA
3R	6105675	3R_6105675_SNP [dm3] 3R_10279953_SNP [dm6]	T	A	4.657e^-4	0.936	INTRON CG43143
2R	4898348	2R_4898348_SNP [dm3] 2R_9010843_SNP [dm6]	C	A	4.663e^-4	0.936	INTRON CG8172
3R	3164215	3R_3164215_SNP [dm3] 3R_7338493_SNP [dm6]	A	C	4.673e^-4	0.936	INTERGENIC	TF binding site mE1_TFBS_cad
3L	20123996	3L_20123996_SNP [dm3] 3L_20130896_SNP [dm6]	C	A	4.676e^-4	0.936	NON_SYNONYMOUS_CODING obst-J INTRON gig	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8405526	X_8405526_SNP [dm3] X_8511493_SNP [dm6]	T	A	4.687e^-4	0.936	INTRON CG33181	TF binding site BDTNP1_TFBS_dl
3R	6218645	3R_6218645_SNP [dm3] 3R_10392923_SNP [dm6]	A	G	4.693e^-4	0.936	INTRON cwo
3R	10786018	3R_10786018_SNP [dm3] 3R_14960296_SNP [dm6]	G	A	4.696e^-4	0.936	INTERGENIC
3R	10354538	3R_10354538_SNP [dm3] 3R_14528816_SNP [dm6]	C	T	4.706e^-4	0.936	INTRON Pde6
2R	13195840	2R_13195840_SNP [dm3] 2R_17308335_SNP [dm6]	G	T	4.706e^-4	0.936	INTRON mbl
X	16443965	X_16443965_SNP [dm3] X_16549932_SNP [dm6]	G	A	4.710e^-4	0.936	INTRON Arp2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16963147	3L_16963147_SNP [dm3] 3L_16970047_SNP [dm6]	T	C	4.710e^-4	0.936	UTR_5_PRIME Exn
X	9651269	X_9651269_SNP [dm3] X_9757236_SNP [dm6]	A	T	4.710e^-4	0.936	DOWNSTREAM Sp1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9631278	2L_9631278_SNP [dm3] 2L_9631278_SNP [dm6]	C	T	4.714e^-4	0.936	INTERGENIC
3L	12295638	3L_12295638_SNP [dm3] 3L_12302538_SNP [dm6]	C	T	4.729e^-4	0.936	DOWNSTREAM CR44550 EXON CR44551
X	19873187	X_19873187_INS [dm3] X_19979154_INS [dm6]	A	ATTTTCTATTAAGAGATAT...	4.732e^-4	0.936	INTERGENIC
2R	17590911	2R_17590911_SNP [dm3] 2R_21703406_SNP [dm6]	A	G	4.733e^-4	0.936	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3R	12737903	3R_12737903_SNP [dm3] 3R_16912181_SNP [dm6]	C	A	4.734e^-4	0.936	INTRON iab-8
2R	9421946	2R_9421946_SNP [dm3] 2R_13534441_SNP [dm6]	T	G	4.736e^-4	0.936	UPSTREAM Vmat INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	20262315	X_20262315_DEL [dm3] X_20391288_DEL [dm6]	TGATGTTTCTTAT...	T	4.739e^-4	0.936	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13788293	2R_13788293_SNP [dm3] 2R_17900788_SNP [dm6]	T	C	4.743e^-4	0.936	INTRON Elk	TF binding site BDTNP1_TFBS_twi
3R	3425487	3R_3425487_SNP [dm3] 3R_7599765_SNP [dm6]	T	C	4.744e^-4	0.936	INTRON CG34127
3R	15154258	3R_15154258_SNP [dm3] 3R_19328536_SNP [dm6]	G	A	4.756e^-4	0.936	UPSTREAM CR44175 INTERGENIC
2L	10432968	2L_10432968_SNP [dm3] 2L_10432968_SNP [dm6]	T	A	4.774e^-4	0.936	UTR_3_PRIME TfIIB & 1 other DOWNSTREAM TfIIB	TF binding site mE1_TFBS_cad
3L	15632453	3L_15632453_SNP [dm3] 3L_15639353_SNP [dm6]	T	A	4.787e^-4	0.936	INTRON comm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2611071	3L_2611071_SNP [dm3] 3L_2611071_SNP [dm6]	G	T	4.787e^-4	0.936	SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17042676	2R_17042676_SNP [dm3] 2R_21155171_SNP [dm6]	G	C	4.799e^-4	0.936	NON_SYNONYMOUS_CODING CG30389	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13425187	3L_13425187_DEL [dm3] 3L_13432087_DEL [dm6]	GGTCTCTGTGGTG...	G	4.807e^-4	0.936	UPSTREAM tRNA:V4:70BCb INTRON CG10713
2R	10998575	2R_10998575_SNP [dm3] 2R_15111070_SNP [dm6]	T	G	4.808e^-4	0.936	INTERGENIC
2L	14702724	2L_14702724_SNP [dm3] 2L_14702724_SNP [dm6]	C	G	4.814e^-4	0.936	INTERGENIC
3L	9694030	3L_9694030_SNP [dm3] 3L_9700930_SNP [dm6]	G	A	4.832e^-4	0.936	NON_SYNONYMOUS_CODING CG6761 DOWNSTREAM UbcD4	TF binding site mE1_TFBS_cad
X	13222024	X_13222024_SNP [dm3] X_13327991_SNP [dm6]	A	G	4.838e^-4	0.936	INTRON IP3K2
2L	1598680	2L_1598680_SNP [dm3] 2L_1598680_SNP [dm6]	C	A	4.838e^-4	0.936	INTRON haf & 1 other
2R	13556739	2R_13556739_SNP [dm3] 2R_17669234_SNP [dm6]	T	C	4.839e^-4	0.936	UTR_3_PRIME eIF3-S8 UPSTREAM CG30108 & 1 other DOWNSTREAM eIF3-S8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
3L	16652578	3L_16652578_SNP [dm3] 3L_16659478_SNP [dm6]	C	A	4.844e^-4	0.936	INTRON Baldspot	TF binding site BDTNP1_TFBS_dl
2L	3129824	2L_3129824_SNP [dm3] 2L_3129824_SNP [dm6]	T	C	4.850e^-4	0.936	DOWNSTREAM CG15403 INTRON toc
3L	11020859	3L_11020859_SNP [dm3] 3L_11027759_SNP [dm6]	T	A	4.854e^-4	0.936	DOWNSTREAM CG32079 INTRON CG32081
3L	1103305	3L_1103305_SNP [dm3] 3L_1103305_SNP [dm6]	T	G	4.857e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	16740842	2R_16740842_SNP [dm3] 2R_20853337_SNP [dm6]	A	G	4.863e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	4932590	3R_4932590_SNP [dm3] 3R_9106868_SNP [dm6]	C	T	4.871e^-4	0.936	INTRON pum
3R	15325911	3R_15325911_SNP [dm3] 3R_19500189_SNP [dm6]	A	C	4.874e^-4	0.936	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9463889	2L_9463889_DEL [dm3] 2L_9463889_DEL [dm6]	CA	G	4.877e^-4	0.936	UTR_3_PRIME numb DOWNSTREAM numb
3L	12075895	3L_12075895_SNP [dm3] 3L_12082795_SNP [dm6]	G	T	4.877e^-4	0.936	UPSTREAM Sema-5c INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA
3L	12075896	3L_12075896_SNP [dm3] 3L_12082796_SNP [dm6]	A	T	4.877e^-4	0.936	UPSTREAM Sema-5c INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA
2L	17808148	2L_17808148_SNP [dm3] 2L_17808148_SNP [dm6]	G	A	4.880e^-4	0.936	INTRON CadN2
2R	9424089	2R_9424089_SNP [dm3] 2R_13536584_SNP [dm6]	A	T	4.881e^-4	0.936	UPSTREAM tRNA:K2:50C DOWNSTREAM CG6145 INTERGENIC
3L	21634482	3L_21634482_SNP [dm3] 3L_21641382_SNP [dm6]	A	G	4.899e^-4	0.936	DOWNSTREAM CG32445 INTRON Atox1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
3L	22903337	3L_22903337_SNP [dm3] 3L_22910237_SNP [dm6]	C	T	4.909e^-4	0.936	UPSTREAM CG12768 DOWNSTREAM CR45661 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	3997257	2L_3997257_INS [dm3] 2L_3997257_INS [dm6]	T	TGA	4.915e^-4	0.936	INTERGENIC
2R	18748993	2R_18748993_SNP [dm3] 2R_22861470_SNP [dm6]	G	A	4.923e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	4861710	3L_4861710_SNP [dm3] 3L_4861710_SNP [dm6]	C	A	4.940e^-4	0.936	INTRON CG17150
2L	19236590	2L_19236590_SNP [dm3] 2L_19236590_SNP [dm6]	G	A	4.943e^-4	0.936	INTERGENIC
2R	10719573	2R_10719573_SNP [dm3] 2R_14832068_SNP [dm6]	G	A	4.960e^-4	0.936	UPSTREAM CG10205 INTERGENIC
2R	10998561	2R_10998561_INS [dm3] 2R_15111056_INS [dm6]	T	TCTATC	4.964e^-4	0.936	INTERGENIC
2L	19598306	2L_19598306_SNP [dm3] 2L_19598306_SNP [dm6]	A	T	4.970e^-4	0.936	INTRON Lar	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	3290383	X_3290383_SNP [dm3] X_3396350_SNP [dm6]	A	G	4.977e^-4	0.936	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11967295	2R_11967295_SNP [dm3] 2R_16079790_SNP [dm6]	C	A	4.986e^-4	0.936	UPSTREAM CR43415 INTERGENIC
3L	10293184	3L_10293184_SNP [dm3] 3L_10300084_SNP [dm6]	A	G	4.995e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	19578378	3R_19578378_SNP [dm3] 3R_23752656_SNP [dm6]	G	T	4.996e^-4	0.936	UPSTREAM Rpt5 INTRON RanBP3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
2L	12399893	2L_12399893_SNP [dm3] 2L_12399893_SNP [dm6]	T	C	5.003e^-4	0.936	SYNONYMOUS_CODING Pkd2
3L	21602857	3L_21602857_SNP [dm3] 3L_21609757_SNP [dm6]	T	C	5.006e^-4	0.936	SYNONYMOUS_CODING TfAP-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	10984556	2L_10984556_SNP [dm3] 2L_10984556_SNP [dm6]	T	C	5.011e^-4	0.936	INTRON piwi	transposable element FlyBase
X	8292927	X_8292927_SNP [dm3] X_8398894_SNP [dm6]	T	C	5.015e^-4	0.936	UPSTREAM CG10555 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19509341	X_19509341_SNP [dm3] X_19615308_SNP [dm6]	A	G	5.017e^-4	0.936	SYNONYMOUS_CODING Shawn UTR_3_PRIME Tyler UPSTREAM CG14210	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16013909	2L_16013909_SNP [dm3] 2L_16013909_SNP [dm6]	T	A	5.017e^-4	0.936	INTRON beat-Ic
2L	11488078	2L_11488078_INS [dm3] 2L_11488078_INS [dm6]	C	CGTAGCCAC	5.019e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14707915	2R_14707915_SNP [dm3] 2R_18820410_SNP [dm6]	G	C	5.021e^-4	0.936	SYNONYMOUS_CODING Phb2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12439132	3L_12439132_DEL [dm3] 3L_12446032_DEL [dm6]	TT	T	5.040e^-4	0.936	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4534444	3L_4534444_SNP [dm3] 3L_4534444_SNP [dm6]	C	A	5.040e^-4	0.936	INTRON CG11353
3R	3222032	3R_3222032_SNP [dm3] 3R_7396310_SNP [dm6]	A	T	5.046e^-4	0.936	INTERGENIC
3R	4575142	3R_4575142_SNP [dm3] 3R_8749420_SNP [dm6]	A	T	5.055e^-4	0.936	UTR_3_PRIME CG34135 & 1 other INTRON CG8223	TF binding site BDTNP1_TFBS_twi
3L	6753331	3L_6753331_SNP [dm3] 3L_6760231_SNP [dm6]	C	T	5.057e^-4	0.936	SYNONYMOUS_CODING CG32392 INTRON CG32392	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8702799	2L_8702799_SNP [dm3] 2L_8702799_SNP [dm6]	A	G	5.066e^-4	0.936	UPSTREAM CR44992 INTRON Hnf4	TF binding site BDTNP1_TFBS_twi
3L	7309076	3L_7309076_SNP [dm3] 3L_7315976_SNP [dm6]	T	C	5.067e^-4	0.936	INTERGENIC
3L	7309077	3L_7309077_SNP [dm3] 3L_7315977_SNP [dm6]	T	C	5.067e^-4	0.936	INTERGENIC
2R	3208446	2R_3208446_SNP [dm3] 2R_7320941_SNP [dm6]	A	G	5.079e^-4	0.936	INTRON Dscam1
3L	3016469	3L_3016469_SNP [dm3] 3L_3016469_SNP [dm6]	G	C	5.079e^-4	0.936	NON_SYNONYMOUS_CODING CG32487 UPSTREAM CG32488
X	2473977	X_2473977_SNP [dm3] X_2579944_SNP [dm6]	G	T	5.084e^-4	0.936	SPLICE_SITE_REGION Vha36-3 INTRON Vha36-3
3L	22841596	3L_22841596_SNP [dm3] 3L_22848496_SNP [dm6]	T	A	5.084e^-4	0.936	UPSTREAM tRNA:CR32460 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16943096	2R_16943096_SNP [dm3] 2R_21055591_SNP [dm6]	G	T	5.085e^-4	0.936	INTRON shg	TF binding site BDTNP1_TFBS_dl
3R	3542301	3R_3542301_SNP [dm3] 3R_7716579_SNP [dm6]	A	G	5.092e^-4	0.936	INTERGENIC
2R	13270117	2R_13270117_SNP [dm3] 2R_17382612_SNP [dm6]	T	A	5.095e^-4	0.936	INTERGENIC	TF binding site mE1_TFBS_inv
2L	12418606	2L_12418606_SNP [dm3] 2L_12418606_SNP [dm6]	C	T	5.096e^-4	0.936	INTRON vir-1
3R	6249047	3R_6249047_SNP [dm3] 3R_10423325_SNP [dm6]	G	A	5.097e^-4	0.936	INTERGENIC
2R	12696341	2R_12696341_SNP [dm3] 2R_16808836_SNP [dm6]	C	T	5.101e^-4	0.936	INTERGENIC
3L	15304346	3L_15304346_SNP [dm3] 3L_15311246_SNP [dm6]	G	A	5.120e^-4	0.936	DOWNSTREAM CG7255 INTERGENIC
3L	14901597	3L_14901597_SNP [dm3] 3L_14908497_SNP [dm6]	T	G	5.120e^-4	0.936	INTRON DCX-EMAP	TF binding site BDTNP1_TFBS_twi
2R	14327911	2R_14327911_SNP [dm3] 2R_18440406_SNP [dm6]	G	T	5.125e^-4	0.936	UTR_5_PRIME CG30118 UPSTREAM slim	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3089819	3L_3089819_SNP [dm3] 3L_3089819_SNP [dm6]	G	A	5.134e^-4	0.936	UTR_3_PRIME CG11486 UPSTREAM snRNA:U5:63BC	TF binding site BDTNP1_TFBS_twi
2L	10672172	2L_10672172_SNP [dm3] 2L_10672172_SNP [dm6]	T	A	5.137e^-4	0.936	DOWNSTREAM CG31871 INTERGENIC
2R	9147218	2R_9147218_SNP [dm3] 2R_13259713_SNP [dm6]	T	A	5.138e^-4	0.936	UPSTREAM CG42319 INTERGENIC
2L	10646281	2L_10646281_SNP [dm3] 2L_10646281_SNP [dm6]	C	G	5.148e^-4	0.936	UPSTREAM CG17097 DOWNSTREAM CG18284 INTERGENIC
3R	14302048	3R_14302048_SNP [dm3] 3R_18476326_SNP [dm6]	A	G	5.148e^-4	0.936	INTRON fru
3R	20056500	3R_20056500_SNP [dm3] 3R_24230778_SNP [dm6]	C	A	5.155e^-4	0.936	UPSTREAM Spase22-23 & 1 other INTRON mask EXON CR45217	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx

By genomic position
Variant impact
Gene name

Wing_L2_Vein_Length phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results