DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.773e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.088994
In_3R_P	0.088053
In_3R_Mo	0.007171

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.0774	0.079
In_3R_Mo	11.8746	0.0026

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2572 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	23565299	3R_23565299_DEL [dm3] 3R_27739577_DEL [dm6]	CCATCACCCATGGC...	C	8.004e^-7	0.649	INTRON Ets98B
3R	5121979	3R_5121979_SNP [dm3] 3R_9296257_SNP [dm6]	T	G	1.969e^-6	0.649	INTRON CG8861
3L	1857609	3L_1857609_SNP [dm3] 3L_1857609_SNP [dm6]	A	G	2.313e^-6	0.649	NON_SYNONYMOUS_CODING CG12024	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13506075	2R_13506075_SNP [dm3] 2R_17618570_SNP [dm6]	T	G	2.353e^-6	0.649	UPSTREAM CG44403 INTRON CG10936
X	10501789	X_10501789_SNP [dm3] X_10607756_SNP [dm6]	A	C	3.029e^-6	0.649	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2645866	3L_2645866_SNP [dm3] 3L_2645866_SNP [dm6]	A	G	3.209e^-6	0.649	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13600672	3R_13600672_SNP [dm3] 3R_17774950_SNP [dm6]	C	T	3.786e^-6	0.649	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14248500	3L_14248500_SNP [dm3] 3L_14255400_SNP [dm6]	G	T	3.820e^-6	0.649	INTERGENIC
3L	1857653	3L_1857653_SNP [dm3] 3L_1857653_SNP [dm6]	C	T	3.972e^-6	0.649	SYNONYMOUS_CODING CG12024	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13682125	2R_13682125_SNP [dm3] 2R_17794620_SNP [dm6]	A	G	4.224e^-6	0.649	INTRON Dhit	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2649575	3L_2649575_SNP [dm3] 3L_2649575_SNP [dm6]	A	G	4.407e^-6	0.649	NON_SYNONYMOUS_CODING CG1246 DOWNSTREAM Aats-pro
2R	8987454	2R_8987454_SNP [dm3] 2R_13099949_SNP [dm6]	A	C	4.610e^-6	0.649	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	18952468	2R_18952468_SNP [dm3] 2R_23064945_SNP [dm6]	C	G	5.002e^-6	0.649	SYNONYMOUS_CODING PPO3 UPSTREAM CG9890	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	2649565	3L_2649565_SNP [dm3] 3L_2649565_SNP [dm6]	A	G	5.587e^-6	0.649	SYNONYMOUS_CODING CG1246 DOWNSTREAM Aats-pro
2R	15002546	2R_15002546_SNP [dm3] 2R_19115041_SNP [dm6]	T	C	5.635e^-6	0.649	INTRON 5-HT1A
2R	15874982	2R_15874982_SNP [dm3] 2R_19987477_SNP [dm6]	C	T	5.652e^-6	0.649	INTERGENIC
2R	4496065	2R_4496065_INS [dm3] 2R_8608560_INS [dm6]	A	ACGA	5.881e^-6	0.649	INTRON rgr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2649550	3L_2649550_SNP [dm3] 3L_2649550_SNP [dm6]	G	T	6.686e^-6	0.668	SYNONYMOUS_CODING CG1246 DOWNSTREAM Aats-pro
3L	1858016	3L_1858016_SNP [dm3] 3L_1858016_SNP [dm6]	A	G	6.771e^-6	0.668	SYNONYMOUS_CODING CG12024	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5095096	2L_5095096_SNP [dm3] 2L_5095096_SNP [dm6]	T	C	7.211e^-6	0.676	SYNONYMOUS_CODING CG5828	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13095605	X_13095605_INS [dm3] X_13201572_INS [dm6]	G	GAAAATGGGAG...	8.492e^-6	0.686	FRAME_SHIFT CG44437 INTRON sno	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	6705710	2L_6705710_SNP [dm3] 2L_6705710_SNP [dm6]	T	C	8.530e^-6	0.686	INTRON Tsp
3R	8666856	3R_8666856_SNP [dm3] 3R_12841134_SNP [dm6]	G	T	8.798e^-6	0.686	UTR_3_PRIME beat-Va DOWNSTREAM beat-Va
2R	13682182	2R_13682182_SNP [dm3] 2R_17794677_SNP [dm6]	G	A	9.640e^-6	0.686	INTRON Dhit	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	12023901	3L_12023901_SNP [dm3] 3L_12030801_SNP [dm6]	C	T	9.780e^-6	0.686	INTRON rols	TF binding site mE1_TFBS_cad
2R	17908230	2R_17908230_DEL [dm3] 2R_22020725_DEL [dm6]	AA	A	1.024e^-5	0.686	INTRON CG34370
3L	15741827	3L_15741827_SNP [dm3] 3L_15748727_SNP [dm6]	T	C	1.076e^-5	0.686	DOWNSTREAM CR45240 INTERGENIC
X	8113188	X_8113188_SNP [dm3] X_8219155_SNP [dm6]	C	T	1.078e^-5	0.686	INTRON sdt	TF binding site BDTNP1_TFBS_dl
3R	19952709	3R_19952709_SNP [dm3] 3R_24126987_SNP [dm6]	T	C	1.157e^-5	0.686	SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad
3L	12846891	3L_12846891_SNP [dm3] 3L_12853791_SNP [dm6]	T	C	1.169e^-5	0.686	UTR_5_PRIME Ent3 DOWNSTREAM Wbp2
2R	13772991	2R_13772991_SNP [dm3] 2R_17885486_SNP [dm6]	C	T	1.211e^-5	0.686	INTRON Elk
X	5010458	X_5010458_SNP [dm3] X_5116425_SNP [dm6]	G	A	1.265e^-5	0.686	INTRON rg & 1 other
2L	7100238	2L_7100238_INS [dm3] 2L_7100238_INS [dm6]	G	GG	1.402e^-5	0.686	INTRON Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	2930807	2L_2930807_SNP [dm3] 2L_2930807_SNP [dm6]	C	T	1.470e^-5	0.686	INTRON lilli
X	12754344	X_12754344_INS [dm3] X_12860311_INS [dm6]	T	TT	1.475e^-5	0.686	INTRON Pde9
3L	6092697	3L_6092697_SNP [dm3] 3L_6099597_SNP [dm6]	T	C	1.534e^-5	0.686	INTRON Ets65A
X	22253518	X_22253518_SNP [dm3] X_22851682_SNP [dm6]	G	T	1.547e^-5	0.686	INTRON fog & 1 other
2L	10237153	2L_10237153_SNP [dm3] 2L_10237153_SNP [dm6]	G	A	1.563e^-5	0.686	SYNONYMOUS_CODING mthl15
3R	5121977	3R_5121977_SNP [dm3] 3R_9296255_SNP [dm6]	A	T	1.609e^-5	0.686	INTRON CG8861
3L	12023899	3L_12023899_SNP [dm3] 3L_12030799_SNP [dm6]	T	A	1.635e^-5	0.686	INTRON rols	TF binding site mE1_TFBS_cad
3L	12847020	3L_12847020_SNP [dm3] 3L_12853920_SNP [dm6]	C	T	1.711e^-5	0.686	UTR_5_PRIME Ent3 DOWNSTREAM Wbp2
2R	12539421	2R_12539421_SNP [dm3] 2R_16651916_SNP [dm6]	G	A	1.768e^-5	0.686	SYNONYMOUS_CODING Amyrel DOWNSTREAM gprs	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20833289	3R_20833289_SNP [dm3] 3R_25007567_SNP [dm6]	G	A	1.801e^-5	0.686	INTRON tnc
3L	5960344	3L_5960344_SNP [dm3] 3L_5967244_SNP [dm6]	G	C	1.843e^-5	0.686	DOWNSTREAM CG10479 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
2L	19156440	2L_19156440_SNP [dm3] 2L_19156440_SNP [dm6]	T	C	1.845e^-5	0.686	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	24710725	3R_24710725_SNP [dm3] 3R_28885003_SNP [dm6]	C	T	1.846e^-5	0.686	SYNONYMOUS_CODING CG14526 INTRON CG33203	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20194195	X_20194195_SNP [dm3] X_20323168_SNP [dm6]	C	A	1.856e^-5	0.686	INTRON CG1504
3L	14835275	3L_14835275_INS [dm3] 3L_14842175_INS [dm6]	T	TTGCAA	1.978e^-5	0.686	INTRON CG17839
3L	7296139	3L_7296139_DEL [dm3] 3L_7303039_DEL [dm6]	AA	A	1.996e^-5	0.686	INTRON unc-13-4A
3L	21749203	3L_21749203_SNP [dm3] 3L_21756103_SNP [dm6]	C	A	2.058e^-5	0.686	INTRON Syn1	TF binding site mE1_TFBS_chinmo
2R	15874958	2R_15874958_SNP [dm3] 2R_19987453_SNP [dm6]	G	A	2.110e^-5	0.686	INTERGENIC
3L	4683350	3L_4683350_SNP [dm3] 3L_4683350_SNP [dm6]	A	T	2.152e^-5	0.686	INTRON axo
3R	10628531	3R_10628531_SNP [dm3] 3R_14802809_SNP [dm6]	C	A	2.152e^-5	0.686	SYNONYMOUS_CODING CG14857
2R	6827616	2R_6827616_SNP [dm3] 2R_10940111_SNP [dm6]	T	C	2.214e^-5	0.686	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
X	13095658	X_13095658_SNP [dm3] X_13201625_SNP [dm6]	C	T	2.231e^-5	0.686	SYNONYMOUS_CODING CG44437 INTRON sno	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	15090517	2L_15090517_SNP [dm3] 2L_15090517_SNP [dm6]	A	G	2.237e^-5	0.686	INTRON CG15270
2R	6827617	2R_6827617_DEL [dm3] 2R_10940112_DEL [dm6]	TCA	T	2.263e^-5	0.686	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
3R	22673907	3R_22673907_SNP [dm3] 3R_26848185_SNP [dm6]	G	C	2.285e^-5	0.686	INTRON Lerp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	1194700	X_1194700_SNP [dm3] X_1300667_SNP [dm6]	C	T	2.326e^-5	0.686	INTRON DAAM
3R	22673993	3R_22673993_SNP [dm3] 3R_26848271_SNP [dm6]	G	A	2.338e^-5	0.686	INTRON Lerp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12023651	3L_12023651_SNP [dm3] 3L_12030551_SNP [dm6]	G	A	2.355e^-5	0.686	INTRON rols	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7100439	2L_7100439_SNP [dm3] 2L_7100439_SNP [dm6]	G	C	2.366e^-5	0.686	SYNONYMOUS_CODING Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	5121948	3R_5121948_SNP [dm3] 3R_9296226_SNP [dm6]	C	A	2.381e^-5	0.686	INTRON CG8861
3R	26074070	3R_26074070_SNP [dm3] 3R_30248348_SNP [dm6]	T	C	2.386e^-5	0.686	UPSTREAM tRNA:CR31383 DOWNSTREAM tRNA:CR31023 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7969107	2L_7969107_SNP [dm3] 2L_7969107_SNP [dm6]	A	T	2.506e^-5	0.686	INTRON Snoo
2R	12821148	2R_12821148_SNP [dm3] 2R_16933643_SNP [dm6]	C	T	2.510e^-5	0.686	INTRON Pkc53E	TF binding site BDTNP1_TFBS_twi
3R	18579070	3R_18579070_SNP [dm3] 3R_22753348_SNP [dm6]	G	T	2.596e^-5	0.686	INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1857866	3L_1857866_SNP [dm3] 3L_1857866_SNP [dm6]	C	T	2.610e^-5	0.686	SYNONYMOUS_CODING CG12024	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22251274	3R_22251274_DEL [dm3] 3R_26425552_DEL [dm6]	AT	G	2.629e^-5	0.686	UPSTREAM CG6503 INTRON CR31084 & 1 other
2L	5095107	2L_5095107_SNP [dm3] 2L_5095107_SNP [dm6]	A	C	2.677e^-5	0.686	SYNONYMOUS_CODING CG5828	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10502618	X_10502618_SNP [dm3] X_10608585_SNP [dm6]	A	G	2.678e^-5	0.686	INTRON CG43347	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11481430	2R_11481430_SNP [dm3] 2R_15593925_SNP [dm6]	T	C	2.764e^-5	0.686	INTERGENIC
2R	19397731	2R_19397731_SNP [dm3] 2R_23510208_SNP [dm6]	G	A	2.998e^-5	0.686	INTERGENIC
3R	5121954	3R_5121954_SNP [dm3] 3R_9296232_SNP [dm6]	A	G	3.093e^-5	0.686	INTRON CG8861
X	1196886	X_1196886_SNP [dm3] X_1302853_SNP [dm6]	T	C	3.103e^-5	0.686	INTRON DAAM	TF binding site mE1_TFBS_chinmo
2R	14095629	2R_14095629_SNP [dm3] 2R_18208124_SNP [dm6]	T	C	3.234e^-5	0.686	NON_SYNONYMOUS_CODING CG30114
2L	7100231	2L_7100231_SNP [dm3] 2L_7100231_SNP [dm6]	T	G	3.239e^-5	0.686	INTRON Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	15196083	3R_15196083_SNP [dm3] 3R_19370361_SNP [dm6]	T	C	3.257e^-5	0.686	INTRON Ino80
2R	12457959	2R_12457959_SNP [dm3] 2R_16570454_SNP [dm6]	T	C	3.263e^-5	0.686	DOWNSTREAM CG4945 INTRON RpS15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19826237	3R_19826237_SNP [dm3] 3R_24000515_SNP [dm6]	A	G	3.300e^-5	0.686	SYNONYMOUS_CODING KrT95D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6805919	2R_6805919_SNP [dm3] 2R_10918414_SNP [dm6]	G	A	3.308e^-5	0.686	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	24710863	3R_24710863_SNP [dm3] 3R_28885141_SNP [dm6]	C	G	3.355e^-5	0.686	SYNONYMOUS_CODING CG14526 INTRON CG33203	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15324049	3L_15324049_SNP [dm3] 3L_15330949_SNP [dm6]	G	T	3.383e^-5	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad
3R	15196056	3R_15196056_SNP [dm3] 3R_19370334_SNP [dm6]	A	G	3.405e^-5	0.686	INTRON Ino80
X	2690048	X_2690048_SNP [dm3] X_2796015_SNP [dm6]	A	C	3.454e^-5	0.686	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	13348662	X_13348662_SNP [dm3] X_13454629_SNP [dm6]	T	C	3.471e^-5	0.686	INTRON Neto
3R	13600203	3R_13600203_SNP [dm3] 3R_17774481_SNP [dm6]	C	T	3.472e^-5	0.686	UTR_5_PRIME CG43102 INTRON CG43102
3R	13600449	3R_13600449_SNP [dm3] 3R_17774727_SNP [dm6]	C	T	3.472e^-5	0.686	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl
3L	3763539	3L_3763539_SNP [dm3] 3L_3763539_SNP [dm6]	A	G	3.525e^-5	0.686	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2651890	3L_2651890_SNP [dm3] 3L_2651890_SNP [dm6]	C	A	3.594e^-5	0.686	UPSTREAM Snup & 2 others INTERGENIC
3R	24710542	3R_24710542_SNP [dm3] 3R_28884820_SNP [dm6]	T	G	3.607e^-5	0.686	SYNONYMOUS_CODING CG14526 INTRON CG33203	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	8447265	2L_8447265_SNP [dm3] 2L_8447265_SNP [dm6]	A	G	3.640e^-5	0.686	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	10315159	3R_10315159_SNP [dm3] 3R_14489437_SNP [dm6]	C	T	3.735e^-5	0.686	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	3763520	3L_3763520_INS [dm3] 3L_3763520_INS [dm6]	C	CCC	3.751e^-5	0.686	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1708679	3L_1708679_SNP [dm3] 3L_1708679_SNP [dm6]	T	C	3.780e^-5	0.686	INTRON CG7991
3L	12033758	3L_12033758_SNP [dm3] 3L_12040658_SNP [dm6]	G	T	3.789e^-5	0.686	INTRON rols
X	12709389	X_12709389_SNP [dm3] X_12815356_SNP [dm6]	C	G	3.794e^-5	0.686	INTRON Pde9
3R	22673992	3R_22673992_SNP [dm3] 3R_26848270_SNP [dm6]	C	A	3.867e^-5	0.686	INTRON Lerp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20218412	X_20218412_SNP [dm3] X_20347385_SNP [dm6]	T	A	3.867e^-5	0.686	INTERGENIC
2R	14281109	2R_14281109_SNP [dm3] 2R_18393604_SNP [dm6]	A	G	3.920e^-5	0.686	UPSTREAM Idgf5 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6290110	3L_6290110_SNP [dm3] 3L_6297010_SNP [dm6]	C	G	3.964e^-5	0.686	INTERGENIC
3L	20051801	3L_20051801_SNP [dm3] 3L_20058701_SNP [dm6]	T	A	3.991e^-5	0.686	UTR_3_PRIME sNPF-R
3L	1857764	3L_1857764_SNP [dm3] 3L_1857764_SNP [dm6]	T	C	4.065e^-5	0.686	SYNONYMOUS_CODING CG12024	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5945033	3L_5945033_SNP [dm3] 3L_5951933_SNP [dm6]	G	A	4.086e^-5	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10302652	3L_10302652_SNP [dm3] 3L_10309552_SNP [dm6]	A	G	4.136e^-5	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5270530	2L_5270530_SNP [dm3] 2L_5270530_SNP [dm6]	A	T	4.215e^-5	0.686	DOWNSTREAM Cyp4ac3 INTRON tkv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	13600157	3R_13600157_SNP [dm3] 3R_17774435_SNP [dm6]	T	G	4.253e^-5	0.686	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3L	411206	3L_411206_INS [dm3] 3L_411206_INS [dm6]	C	CA	4.275e^-5	0.686	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12754498	X_12754498_SNP [dm3] X_12860465_SNP [dm6]	T	A	4.356e^-5	0.686	INTRON Pde9
2R	18475324	2R_18475324_DEL [dm3] 2R_22587819_DEL [dm6]	GA	G	4.413e^-5	0.686	INTRON dnr1
X	5010461	X_5010461_SNP [dm3] X_5116428_SNP [dm6]	G	C	4.462e^-5	0.686	INTRON rg & 1 other
3L	12730661	3L_12730661_SNP [dm3] 3L_12737561_SNP [dm6]	T	C	4.470e^-5	0.686	SYNONYMOUS_CODING Ptp69D	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10502167	X_10502167_SNP [dm3] X_10608134_SNP [dm6]	G	A	4.565e^-5	0.686	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	5850108	X_5850108_INS [dm3] X_5956075_INS [dm6]	G	GAT	4.570e^-5	0.686	INTRON CG6067
X	19572577	X_19572577_SNP [dm3] X_19678544_SNP [dm6]	G	A	4.622e^-5	0.686	SYNONYMOUS_CODING dome	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7439745	2R_7439745_SNP [dm3] 2R_11552240_SNP [dm6]	T	C	4.643e^-5	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13348612	X_13348612_DEL [dm3] X_13454579_DEL [dm6]	TT	T	4.681e^-5	0.686	INTRON Neto
3L	12519674	3L_12519674_SNP [dm3] 3L_12526574_SNP [dm6]	G	A	4.682e^-5	0.686	DOWNSTREAM nst INTRON eIF-2beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2651856	3L_2651856_SNP [dm3] 3L_2651856_SNP [dm6]	T	C	4.686e^-5	0.686	UPSTREAM Snup & 2 others INTERGENIC
X	1190943	X_1190943_SNP [dm3] X_1296910_SNP [dm6]	T	C	4.687e^-5	0.686	INTRON DAAM	TF binding site mE1_TFBS_chinmo
X	2689994	X_2689994_SNP [dm3] X_2795961_SNP [dm6]	G	A	4.731e^-5	0.686	INTRON kirre & 1 other	regulatory region REDfly_CRMs
X	2690011	X_2690011_SNP [dm3] X_2795978_SNP [dm6]	G	A	4.731e^-5	0.686	INTRON kirre & 1 other	regulatory region REDfly_CRMs
X	2690031	X_2690031_SNP [dm3] X_2795998_SNP [dm6]	A	G	4.731e^-5	0.686	INTRON kirre & 1 other	regulatory region REDfly_CRMs
3L	15355850	3L_15355850_SNP [dm3] 3L_15362750_SNP [dm6]	G	A	4.734e^-5	0.686	INTERGENIC
2R	19024800	2R_19024800_SNP [dm3] 2R_23137277_SNP [dm6]	G	A	4.781e^-5	0.686	INTERGENIC
3L	4683329	3L_4683329_SNP [dm3] 3L_4683329_SNP [dm6]	C	T	4.926e^-5	0.686	INTRON axo
X	10505341	X_10505341_SNP [dm3] X_10611308_SNP [dm6]	C	T	4.960e^-5	0.686	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4117336	3R_4117336_SNP [dm3] 3R_8291614_SNP [dm6]	C	G	5.035e^-5	0.686	SYNONYMOUS_CODING CG31464 UPSTREAM CG31463	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12541604	2R_12541604_SNP [dm3] 2R_16654099_SNP [dm6]	T	C	5.080e^-5	0.686	NON_SYNONYMOUS_CODING Nach
2R	7439749	2R_7439749_SNP [dm3] 2R_11552244_SNP [dm6]	T	C	5.103e^-5	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2651959	3L_2651959_SNP [dm3] 3L_2651959_SNP [dm6]	A	T	5.187e^-5	0.686	UPSTREAM Snup & 2 others INTERGENIC
2L	8447278	2L_8447278_SNP [dm3] 2L_8447278_SNP [dm6]	T	G	5.199e^-5	0.686	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	22673918	3R_22673918_SNP [dm3] 3R_26848196_SNP [dm6]	A	T	5.231e^-5	0.686	INTRON Lerp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26043688	3R_26043688_SNP [dm3] 3R_30217966_SNP [dm6]	C	T	5.263e^-5	0.686	INTERGENIC
3L	14925605	3L_14925605_SNP [dm3] 3L_14932505_SNP [dm6]	T	G	5.270e^-5	0.686	INTRON DCX-EMAP
2R	7439729	2R_7439729_SNP [dm3] 2R_11552224_SNP [dm6]	G	C	5.289e^-5	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	5.328e^-5	0.686	INTRON dnc
2R	17527407	2R_17527407_SNP [dm3] 2R_21639902_SNP [dm6]	C	A	5.353e^-5	0.686	INTERGENIC
2L	9051138	2L_9051138_SNP [dm3] 2L_9051138_SNP [dm6]	T	C	5.488e^-5	0.686	DOWNSTREAM CG31708 INTERGENIC
X	2853018	X_2853018_SNP [dm3] X_2958985_SNP [dm6]	A	G	5.522e^-5	0.686	INTRON kirre & 1 other	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	5360924	3R_5360924_DEL [dm3] 3R_9535202_DEL [dm6]	AA	A	5.534e^-5	0.686	DOWNSTREAM mura INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	3477975	X_3477975_SNP [dm3] X_3583942_SNP [dm6]	A	C	5.558e^-5	0.686	INTRON AstA-R1
2R	20329276	2R_20329276_SNP [dm3] 2R_24441753_SNP [dm6]	T	A	5.560e^-5	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15176927	2R_15176927_SNP [dm3] 2R_19289422_SNP [dm6]	G	A	5.676e^-5	0.686	SYNONYMOUS_CODING CG18607 UPSTREAM FK506-bp2 DOWNSTREAM CG18606	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	14835265	3L_14835265_SNP [dm3] 3L_14842165_SNP [dm6]	T	C	5.704e^-5	0.686	INTRON CG17839
3L	13113697	3L_13113697_SNP [dm3] 3L_13120597_SNP [dm6]	T	C	5.720e^-5	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	14693662	2R_14693662_SNP [dm3] 2R_18806157_SNP [dm6]	G	C	5.762e^-5	0.686	INTRON CR44468 EXON CR44468	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11390008	3L_11390008_SNP [dm3] 3L_11396908_SNP [dm6]	T	G	5.797e^-5	0.686	UPSTREAM CG44362 INTERGENIC
2L	10847892	2L_10847892_SNP [dm3] 2L_10847892_SNP [dm6]	A	G	5.857e^-5	0.686	SYNONYMOUS_CODING porin UPSTREAM Porin2
3L	4683407	3L_4683407_SNP [dm3] 3L_4683407_SNP [dm6]	T	A	5.987e^-5	0.686	INTRON axo
3R	20833400	3R_20833400_DEL [dm3] 3R_25007678_DEL [dm6]	TT	C	5.993e^-5	0.686	INTRON tnc
2L	16239804	2L_16239804_SNP [dm3] 2L_16239804_SNP [dm6]	C	T	5.995e^-5	0.686	INTRON CG42817
3L	3832651	3L_3832651_SNP [dm3] 3L_3832651_SNP [dm6]	G	A	6.018e^-5	0.686	SYNONYMOUS_CODING enc
2R	19905384	2R_19905384_SNP [dm3] 2R_24017861_SNP [dm6]	C	T	6.023e^-5	0.686	UPSTREAM CG4324 INTRON CG3121	TF binding site BDTNP1_TFBS_twi
2R	8132873	2R_8132873_SNP [dm3] 2R_12245368_SNP [dm6]	C	A	6.039e^-5	0.686	UPSTREAM CG43244 INTERGENIC
3L	19504244	3L_19504244_SNP [dm3] 3L_19511144_SNP [dm6]	A	G	6.056e^-5	0.686	INTERGENIC
2R	18278806	2R_18278806_SNP [dm3] 2R_22391301_SNP [dm6]	A	G	6.083e^-5	0.686	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14219218	2R_14219218_DEL [dm3] 2R_18331713_DEL [dm6]	AGGAAACCCCAATAGA...	A	6.211e^-5	0.686	INTRON sbb	TF binding site mE1_TFBS_inv
3L	19456302	3L_19456302_SNP [dm3] 3L_19463202_SNP [dm6]	G	A	6.299e^-5	0.686	DOWNSTREAM CG14095 INTERGENIC
3L	4350031	3L_4350031_SNP [dm3] 3L_4350031_SNP [dm6]	G	T	6.328e^-5	0.686	INTRON Cip4
2R	8134408	2R_8134408_SNP [dm3] 2R_12246903_SNP [dm6]	G	T	6.362e^-5	0.686	EXON CR44315
3L	3591602	3L_3591602_SNP [dm3] 3L_3591602_SNP [dm6]	T	C	6.372e^-5	0.686	INTRON Eip63E
2L	5270528	2L_5270528_SNP [dm3] 2L_5270528_SNP [dm6]	A	G	6.374e^-5	0.686	DOWNSTREAM Cyp4ac3 INTRON tkv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	7573170	3L_7573170_SNP [dm3] 3L_7580070_SNP [dm6]	T	A	6.395e^-5	0.686	INTERGENIC
3R	17861217	3R_17861217_SNP [dm3] 3R_22035495_SNP [dm6]	G	A	6.396e^-5	0.686	UTR_3_PRIME Fadd UPSTREAM pit & 1 other INTRON pit	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	17861200	3R_17861200_SNP [dm3] 3R_22035478_SNP [dm6]	C	G	6.418e^-5	0.686	UTR_3_PRIME Fadd UPSTREAM pit & 1 other INTRON pit	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	14879346	3R_14879346_SNP [dm3] 3R_19053624_SNP [dm6]	T	C	6.419e^-5	0.686	INTRON cdi
2R	7439752	2R_7439752_DEL [dm3] 2R_11552247_DEL [dm6]	GTATG	G	6.468e^-5	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15325955	3R_15325955_DEL [dm3] 3R_19500233_DEL [dm6]	TCAGCAATCCATAAAT...	T	6.476e^-5	0.686	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	3811872	2R_3811872_SNP [dm3] 2R_7924367_SNP [dm6]	C	T	6.481e^-5	0.686	SYNONYMOUS_CODING Kdm4A	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_sens
2L	19598099	2L_19598099_SNP [dm3] 2L_19598099_SNP [dm6]	G	A	6.565e^-5	0.686	INTRON Lar
3L	14931260	3L_14931260_SNP [dm3] 3L_14938160_SNP [dm6]	G	C	6.595e^-5	0.686	INTRON DCX-EMAP
3R	21603205	3R_21603205_SNP [dm3] 3R_25777483_SNP [dm6]	A	G	6.641e^-5	0.686	SYNONYMOUS_CODING CG4956 UPSTREAM CG17195
2R	7445661	2R_7445661_SNP [dm3] 2R_11558156_SNP [dm6]	A	T	6.671e^-5	0.686	INTERGENIC
2R	19905418	2R_19905418_SNP [dm3] 2R_24017895_SNP [dm6]	C	T	6.830e^-5	0.686	SPLICE_SITE_REGION CG3121 UPSTREAM CG4324 INTRON CG3121	TF binding site BDTNP1_TFBS_twi
3L	10004629	3L_10004629_SNP [dm3] 3L_10011529_SNP [dm6]	A	T	6.916e^-5	0.686	INTRON dpr6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1999484	3L_1999484_SNP [dm3] 3L_1999484_SNP [dm6]	C	T	6.974e^-5	0.686	INTERGENIC
3L	11864738	3L_11864738_SNP [dm3] 3L_11871638_SNP [dm6]	C	A	7.006e^-5	0.686	UPSTREAM CG5906 INTRON CG44837	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	1192808	X_1192808_SNP [dm3] X_1298775_SNP [dm6]	C	A	7.078e^-5	0.686	UPSTREAM CG32811 INTRON DAAM	TF binding site mE1_TFBS_chinmo
2R	19683955	2R_19683955_INS [dm3] 2R_23796432_INS [dm6]	G	GGG	7.113e^-5	0.686	INTRON CG9850	TF binding site mE1_TFBS_HSA
3R	23197739	3R_23197739_SNP [dm3] 3R_27372017_SNP [dm6]	G	A	7.124e^-5	0.686	UTR_3_PRIME CG42534 DOWNSTREAM CG42534
3L	3727650	3L_3727650_SNP [dm3] 3L_3727650_SNP [dm6]	G	C	7.264e^-5	0.686	INTRON CG32264
X	20532530	X_20532530_SNP [dm3] X_20661503_SNP [dm6]	G	T	7.327e^-5	0.686	UPSTREAM CG1835 DOWNSTREAM Cyp6v1 INTERGENIC
3R	17861139	3R_17861139_SNP [dm3] 3R_22035417_SNP [dm6]	G	T	7.347e^-5	0.686	UTR_3_PRIME Fadd UPSTREAM pit & 1 other INTRON pit	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	21019528	2L_21019528_DEL [dm3] 2L_21019528_DEL [dm6]	TT	T	7.376e^-5	0.686	INTRON CG42238
2R	10998512	2R_10998512_SNP [dm3] 2R_15111007_SNP [dm6]	G	T	7.489e^-5	0.686	INTERGENIC
2L	7100243	2L_7100243_SNP [dm3] 2L_7100243_SNP [dm6]	G	C	7.589e^-5	0.686	INTRON Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	7.610e^-5	0.686	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2651826	3L_2651826_SNP [dm3] 3L_2651826_SNP [dm6]	T	C	7.716e^-5	0.686	UTR_5_PRIME Aats-pro UPSTREAM Snup & 1 other
2R	8133308	2R_8133308_INS [dm3] 2R_12245803_INS [dm6]	A	AA	7.752e^-5	0.686	DOWNSTREAM CR44315 INTERGENIC
X	5721295	X_5721295_SNP [dm3] X_5827262_SNP [dm6]	G	T	7.754e^-5	0.686	INTRON CG15765
2L	10082495	2L_10082495_SNP [dm3] 2L_10082495_SNP [dm6]	G	A	7.777e^-5	0.686	INTRON CG44153
3L	6245713	3L_6245713_SNP [dm3] 3L_6252613_SNP [dm6]	T	C	7.829e^-5	0.686	INTRON Best2
3L	4307328	3L_4307328_SNP [dm3] 3L_4307328_SNP [dm6]	A	T	7.831e^-5	0.686	INTRON dyl
2L	19480177	2L_19480177_SNP [dm3] 2L_19480177_SNP [dm6]	A	G	7.866e^-5	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	19904906	2R_19904906_SNP [dm3] 2R_24017383_SNP [dm6]	T	G	7.890e^-5	0.686	UPSTREAM CG3121 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3L	6092209	3L_6092209_SNP [dm3] 3L_6099109_SNP [dm6]	T	C	7.933e^-5	0.686	INTRON Ets65A
3R	25597674	3R_25597674_SNP [dm3] 3R_29771952_SNP [dm6]	G	A	7.935e^-5	0.686	UPSTREAM kay INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	18454746	X_18454746_INS [dm3] X_18560713_INS [dm6]	A	ACGATGAACA	8.055e^-5	0.686	INTRON Bx
3L	2618049	3L_2618049_INS [dm3] 3L_2618049_INS [dm6]	G	CA	8.065e^-5	0.686	INTRON Pxn
2L	3013943	2L_3013943_SNP [dm3] 2L_3013943_SNP [dm6]	A	G	8.068e^-5	0.686	NON_SYNONYMOUS_CODING CG17265
3L	22905235	3L_22905235_SNP [dm3] 3L_22912135_SNP [dm6]	G	A	8.113e^-5	0.686	SYNONYMOUS_CODING CG12768	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10332307	3R_10332307_SNP [dm3] 3R_14506585_SNP [dm6]	T	A	8.119e^-5	0.686	INTRON CR44177
2R	6827607	2R_6827607_SNP [dm3] 2R_10940102_SNP [dm6]	T	C	8.129e^-5	0.686	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
X	20218600	X_20218600_SNP [dm3] X_20347573_SNP [dm6]	T	A	8.149e^-5	0.686	INTERGENIC
3L	3802830	3L_3802830_SNP [dm3] 3L_3802830_SNP [dm6]	T	A	8.238e^-5	0.686	INTRON CG32264
3R	19952735	3R_19952735_SNP [dm3] 3R_24127013_SNP [dm6]	T	A	8.486e^-5	0.686	NON_SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad
3R	3310338	3R_3310338_SNP [dm3] 3R_7484616_SNP [dm6]	G	T	8.523e^-5	0.686	INTERGENIC
3R	22201381	3R_22201381_SNP [dm3] 3R_26375659_SNP [dm6]	C	G	8.536e^-5	0.686	INTERGENIC
2R	6827482	2R_6827482_SNP [dm3] 2R_10939977_SNP [dm6]	T	C	8.594e^-5	0.686	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
3L	6472008	3L_6472008_SNP [dm3] 3L_6478908_SNP [dm6]	A	C	8.598e^-5	0.686	INTRON CG42747
X	8113228	X_8113228_SNP [dm3] X_8219195_SNP [dm6]	T	C	8.663e^-5	0.686	INTRON sdt	TF binding site BDTNP1_TFBS_dl
2R	19024797	2R_19024797_SNP [dm3] 2R_23137274_SNP [dm6]	C	T	8.750e^-5	0.686	INTERGENIC
3L	2300083	3L_2300083_SNP [dm3] 3L_2300083_SNP [dm6]	G	A	8.789e^-5	0.686	NON_SYNONYMOUS_CODING MsR2 UTR_3_PRIME MsR2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19926540	3R_19926540_INS [dm3] 3R_24100818_INS [dm6]	A	AA	8.811e^-5	0.686	DOWNSTREAM Syx1A INTRON 4EHP
2R	6563273	2R_6563273_INS [dm3] 2R_10675768_INS [dm6]	C	CCTT	8.822e^-5	0.686	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12550564	2R_12550564_SNP [dm3] 2R_16663059_SNP [dm6]	A	T	8.879e^-5	0.686	INTRON Picot
2R	11330187	2R_11330187_SNP [dm3] 2R_15442682_SNP [dm6]	A	G	8.882e^-5	0.686	INTRON CG43729
3R	25226172	3R_25226172_DEL [dm3] 3R_29400450_DEL [dm6]	ATTAAGTATCAA...	A	8.920e^-5	0.686	INTRON Ptp99A
2R	12538806	2R_12538806_SNP [dm3] 2R_16651301_SNP [dm6]	G	A	8.932e^-5	0.686	SYNONYMOUS_CODING Amyrel DOWNSTREAM gprs	TF binding site mE1_TFBS_cad
X	935094	X_935094_SNP [dm3] X_1041061_SNP [dm6]	G	A	8.976e^-5	0.686	UTR_5_PRIME su_w[a]_ INTRON su_w[a]_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_ttk
3L	13310084	3L_13310084_DEL [dm3] 3L_13316984_DEL [dm6]	TA	T	9.008e^-5	0.686	INTERGENIC
3L	11864652	3L_11864652_SNP [dm3] 3L_11871552_SNP [dm6]	T	A	9.018e^-5	0.686	UPSTREAM CG5906 INTRON CG44837	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	6736540	X_6736540_SNP [dm3] X_6842507_SNP [dm6]	C	T	9.085e^-5	0.686	INTRON CG14435	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8113220	X_8113220_SNP [dm3] X_8219187_SNP [dm6]	G	A	9.105e^-5	0.686	INTRON sdt	TF binding site BDTNP1_TFBS_dl
2L	15132213	2L_15132213_DEL [dm3] 2L_15132213_DEL [dm6]	TGTT	T	9.153e^-5	0.686	DOWNSTREAM tRNA:L:35C INTERGENIC
2R	1787294	2R_1787294_SNP [dm3] 2R_5899789_SNP [dm6]	G	T	9.157e^-5	0.686	INTRON CG43366	TF binding site mE1_TFBS_Trl
3L	4642797	3L_4642797_SNP [dm3] 3L_4642797_SNP [dm6]	C	T	9.170e^-5	0.686	SYNONYMOUS_CODING axo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1363201	3L_1363201_SNP [dm3] 3L_1363201_SNP [dm6]	C	G	9.199e^-5	0.686	INTRON Ptp61F
2R	6827312	2R_6827312_SNP [dm3] 2R_10939807_SNP [dm6]	C	G	9.232e^-5	0.686	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
3L	3591681	3L_3591681_SNP [dm3] 3L_3591681_SNP [dm6]	T	C	9.243e^-5	0.686	INTRON Eip63E
2R	254918	2R_254918_SNP [dm3] 2R_4367413_SNP [dm6]	C	T	9.255e^-5	0.686	INTRON Gprk1
2R	19127148	2R_19127148_SNP [dm3] 2R_23239625_SNP [dm6]	T	G	9.268e^-5	0.686	INTERGENIC
3L	5945045	3L_5945045_SNP [dm3] 3L_5951945_SNP [dm6]	T	G	9.342e^-5	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7100227	2L_7100227_DEL [dm3] 2L_7100227_DEL [dm6]	AGA	A	9.369e^-5	0.686	INTRON Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	6245822	3L_6245822_SNP [dm3] 3L_6252722_SNP [dm6]	C	G	9.380e^-5	0.686	INTRON Best2
3L	7573174	3L_7573174_SNP [dm3] 3L_7580074_SNP [dm6]	G	A	9.512e^-5	0.686	INTERGENIC
2L	18376210	2L_18376210_SNP [dm3] 2L_18376210_SNP [dm6]	C	T	9.558e^-5	0.686	INTRON Fas3
3L	7723450	3L_7723450_SNP [dm3] 3L_7730350_SNP [dm6]	A	T	9.608e^-5	0.686	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10332284	3R_10332284_SNP [dm3] 3R_14506562_SNP [dm6]	C	A	9.657e^-5	0.686	INTRON CR44177
3L	7265880	3L_7265880_SNP [dm3] 3L_7272780_SNP [dm6]	G	A	9.685e^-5	0.686	SYNONYMOUS_CODING unc-13-4A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26073203	3R_26073203_SNP [dm3] 3R_30247481_SNP [dm6]	G	A	9.690e^-5	0.686	UPSTREAM CG9733 DOWNSTREAM tRNA:CR31383 INTERGENIC
2R	19564919	2R_19564919_SNP [dm3] 2R_23677396_SNP [dm6]	C	G	9.696e^-5	0.686	INTRON Pde8	TF binding site mE1_TFBS_cad
2R	6822232	2R_6822232_SNP [dm3] 2R_10934727_SNP [dm6]	A	G	9.701e^-5	0.686	INTERGENIC
X	1191641	X_1191641_SNP [dm3] X_1297608_SNP [dm6]	C	A	9.705e^-5	0.686	DOWNSTREAM CG32811 INTRON DAAM	TF binding site mE1_TFBS_chinmo
X	8113222	X_8113222_SNP [dm3] X_8219189_SNP [dm6]	C	A	9.746e^-5	0.686	INTRON sdt	TF binding site BDTNP1_TFBS_dl
X	18122204	X_18122204_SNP [dm3] X_18228171_SNP [dm6]	T	G	9.761e^-5	0.686	EXON CR45622
2L	5814245	2L_5814245_SNP [dm3] 2L_5814245_SNP [dm6]	A	G	9.777e^-5	0.686	INTERGENIC
2L	16081880	2L_16081880_SNP [dm3] 2L_16081880_SNP [dm6]	C	A	9.778e^-5	0.686	DOWNSTREAM beat-Ia INTERGENIC
2R	9077187	2R_9077187_SNP [dm3] 2R_13189682_SNP [dm6]	C	A	9.827e^-5	0.686	UTR_5_PRIME Kdm4B & 2 others UPSTREAM Kdm4B INTRON Kdm4B	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2R	12457966	2R_12457966_SNP [dm3] 2R_16570461_SNP [dm6]	T	A	9.878e^-5	0.686	DOWNSTREAM CG4945 INTRON RpS15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3015698	2L_3015698_SNP [dm3] 2L_3015698_SNP [dm6]	T	A	9.890e^-5	0.686	UTR_3_PRIME CG17265 DOWNSTREAM CG17224	TF binding site BDTNP1_TFBS_twi
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	9.924e^-5	0.686	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10998491	2R_10998491_SNP [dm3] 2R_15110986_SNP [dm6]	A	G	9.991e^-5	0.686	INTERGENIC
3L	4307337	3L_4307337_SNP [dm3] 3L_4307337_SNP [dm6]	T	A	1.005e^-4	0.686	INTRON dyl
2L	6871143	2L_6871143_SNP [dm3] 2L_6871143_SNP [dm6]	G	A	1.007e^-4	0.686	UPSTREAM Nha1 DOWNSTREAM CR44915 INTERGENIC
3R	22090060	3R_22090060_SNP [dm3] 3R_26264338_SNP [dm6]	T	C	1.007e^-4	0.686	INTRON CG6154
3L	12899010	3L_12899010_SNP [dm3] 3L_12905910_SNP [dm6]	T	A	1.017e^-4	0.686	INTERGENIC
3R	14879347	3R_14879347_SNP [dm3] 3R_19053625_SNP [dm6]	G	A	1.017e^-4	0.686	INTRON cdi
2R	5114845	2R_5114845_SNP [dm3] 2R_9227340_SNP [dm6]	T	G	1.020e^-4	0.686	DOWNSTREAM hig INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16435684	2R_16435684_SNP [dm3] 2R_20548179_SNP [dm6]	G	A	1.022e^-4	0.686	UPSTREAM CG30148 DOWNSTREAM Cpr57A & 1 other INTRON Obp57e
2R	16435701	2R_16435701_SNP [dm3] 2R_20548196_SNP [dm6]	G	C	1.022e^-4	0.686	UPSTREAM CG30148 DOWNSTREAM Cpr57A & 1 other INTRON Obp57e
2R	16435708	2R_16435708_SNP [dm3] 2R_20548203_SNP [dm6]	G	A	1.022e^-4	0.686	UPSTREAM CG30148 DOWNSTREAM Cpr57A & 1 other INTRON Obp57e
2R	20211873	2R_20211873_SNP [dm3] 2R_24324350_SNP [dm6]	G	A	1.022e^-4	0.686	UPSTREAM CR44810 INTERGENIC
2L	18376191	2L_18376191_SNP [dm3] 2L_18376191_SNP [dm6]	G	A	1.030e^-4	0.686	INTRON Fas3
X	18454883	X_18454883_SNP [dm3] X_18560850_SNP [dm6]	C	G	1.033e^-4	0.686	INTRON Bx
2L	18930447	2L_18930447_SNP [dm3] 2L_18930447_SNP [dm6]	G	A	1.041e^-4	0.686	INTRON ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1857024	3L_1857024_SNP [dm3] 3L_1857024_SNP [dm6]	T	A	1.046e^-4	0.686	UPSTREAM CG12024 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1858022	3L_1858022_SNP [dm3] 3L_1858022_SNP [dm6]	C	T	1.049e^-4	0.686	SYNONYMOUS_CODING CG12024	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1858401	3L_1858401_SNP [dm3] 3L_1858401_SNP [dm6]	A	G	1.049e^-4	0.686	UTR_3_PRIME CG12024 DOWNSTREAM R	TF binding site mE1_TFBS_cad
3L	1352742	3L_1352742_SNP [dm3] 3L_1352742_SNP [dm6]	T	C	1.050e^-4	0.686	UTR_3_PRIME 312 DOWNSTREAM 312 INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3L	2645886	3L_2645886_SNP [dm3] 3L_2645886_SNP [dm6]	C	A	1.051e^-4	0.686	NON_SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27189510	3R_27189510_SNP [dm3] 3R_31363788_SNP [dm6]	C	T	1.057e^-4	0.686	INTRON CG34347
3R	27189648	3R_27189648_SNP [dm3] 3R_31363926_SNP [dm6]	C	T	1.057e^-4	0.686	INTRON CG34347
3R	27189682	3R_27189682_SNP [dm3] 3R_31363960_SNP [dm6]	A	T	1.057e^-4	0.686	INTRON CG34347
3R	9817342	3R_9817342_INS [dm3] 3R_13991620_INS [dm6]	C	CCATG	1.060e^-4	0.686	INTRON rdx
3R	9817346	3R_9817346_INS [dm3] 3R_13991624_INS [dm6]	T	TGATT	1.060e^-4	0.686	INTRON rdx
2R	14207875	2R_14207875_SNP [dm3] 2R_18320370_SNP [dm6]	A	G	1.061e^-4	0.686	INTRON sbb
2R	5114912	2R_5114912_SNP [dm3] 2R_9227407_SNP [dm6]	T	C	1.072e^-4	0.686	DOWNSTREAM hig INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	12489865	2R_12489865_SNP [dm3] 2R_16602360_SNP [dm6]	T	C	1.075e^-4	0.686	INTRON CG8303
2R	10998493	2R_10998493_SNP [dm3] 2R_15110988_SNP [dm6]	A	G	1.075e^-4	0.686	INTERGENIC
3L	14357140	3L_14357140_SNP [dm3] 3L_14364040_SNP [dm6]	T	A	1.081e^-4	0.686	INTRON fz	TF binding site BDTNP1_TFBS_da
3L	3804442	3L_3804442_SNP [dm3] 3L_3804442_SNP [dm6]	G	A	1.082e^-4	0.686	SYNONYMOUS_CODING ntc INTRON CG32264	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	1189671	X_1189671_SNP [dm3] X_1295638_SNP [dm6]	G	A	1.087e^-4	0.686	NON_SYNONYMOUS_CODING DAAM UTR_5_PRIME DAAM UPSTREAM DAAM	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6827387	2R_6827387_SNP [dm3] 2R_10939882_SNP [dm6]	T	C	1.097e^-4	0.686	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
2R	8129037	2R_8129037_SNP [dm3] 2R_12241532_SNP [dm6]	T	A	1.097e^-4	0.686	SPLICE_SITE_REGION CG43315 DOWNSTREAM CG13170 INTRON CG43315
3R	17861132	3R_17861132_SNP [dm3] 3R_22035410_SNP [dm6]	A	T	1.099e^-4	0.686	UTR_3_PRIME Fadd UPSTREAM pit & 1 other INTRON pit	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	17861398	3R_17861398_SNP [dm3] 3R_22035676_SNP [dm6]	T	C	1.102e^-4	0.686	UPSTREAM pit & 1 other DOWNSTREAM Fadd INTRON pit	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	6055224	3L_6055224_SNP [dm3] 3L_6062124_SNP [dm6]	C	T	1.103e^-4	0.686	DOWNSTREAM CG6592 INTRON CG10472	TF binding site mE1_TFBS_cad
3L	3262929	3L_3262929_SNP [dm3] 3L_3262929_SNP [dm6]	G	A	1.104e^-4	0.686	INTRON ckd
3L	6472019	3L_6472019_SNP [dm3] 3L_6478919_SNP [dm6]	T	A	1.106e^-4	0.686	INTRON CG42747
3R	25638682	3R_25638682_SNP [dm3] 3R_29812960_SNP [dm6]	C	T	1.107e^-4	0.686	SYNONYMOUS_CODING ca	TF binding site mE1_TFBS_chinmo
3L	3591667	3L_3591667_SNP [dm3] 3L_3591667_SNP [dm6]	G	A	1.122e^-4	0.686	INTRON Eip63E
3L	3591668	3L_3591668_SNP [dm3] 3L_3591668_SNP [dm6]	T	A	1.122e^-4	0.686	INTRON Eip63E
3R	12575651	3R_12575651_DEL [dm3] 3R_16749929_DEL [dm6]	GG	G	1.124e^-4	0.686	DOWNSTREAM CG31275 INTRON bxd	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	7076783	2R_7076783_SNP [dm3] 2R_11189278_SNP [dm6]	C	T	1.125e^-4	0.686	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9932477	3L_9932477_SNP [dm3] 3L_9939377_SNP [dm6]	A	G	1.135e^-4	0.686	INTRON CG34356
2L	15289777	2L_15289777_SNP [dm3] 2L_15289777_SNP [dm6]	C	A	1.144e^-4	0.686	INTERGENIC
X	5850051	X_5850051_SNP [dm3] X_5956018_SNP [dm6]	T	A	1.144e^-4	0.686	INTRON CG6067
3L	765636	3L_765636_SNP [dm3] 3L_765636_SNP [dm6]	G	T	1.150e^-4	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10628088	3R_10628088_SNP [dm3] 3R_14802366_SNP [dm6]	C	T	1.150e^-4	0.686	SYNONYMOUS_CODING CG14857	TF binding site mE1_TFBS_cad
2L	7100403	2L_7100403_SNP [dm3] 2L_7100403_SNP [dm6]	G	A	1.153e^-4	0.686	SYNONYMOUS_CODING Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	8113210	X_8113210_SNP [dm3] X_8219177_SNP [dm6]	A	C	1.155e^-4	0.686	INTRON sdt	TF binding site BDTNP1_TFBS_dl
2L	15090507	2L_15090507_SNP [dm3] 2L_15090507_SNP [dm6]	T	C	1.166e^-4	0.686	INTRON CG15270
X	20532529	X_20532529_SNP [dm3] X_20661502_SNP [dm6]	A	T	1.166e^-4	0.686	UPSTREAM CG1835 DOWNSTREAM Cyp6v1 INTERGENIC
3L	1021337	3L_1021337_SNP [dm3] 3L_1021337_SNP [dm6]	G	T	1.168e^-4	0.686	INTRON trio
3L	2170090	3L_2170090_SNP [dm3] 3L_2170090_SNP [dm6]	A	G	1.170e^-4	0.686	SYNONYMOUS_CODING CG5704 UPSTREAM CG15879
2R	18794368	2R_18794368_SNP [dm3] 2R_22906845_SNP [dm6]	G	A	1.172e^-4	0.686	INTRON nahoda
2L	13425828	2L_13425828_SNP [dm3] 2L_13425828_SNP [dm6]	T	C	1.173e^-4	0.686	INTRON CG42784
3L	2343644	3L_2343644_SNP [dm3] 3L_2343644_SNP [dm6]	G	A	1.173e^-4	0.686	SYNONYMOUS_CODING MsR1	TF binding site mE1_TFBS_chinmo
3R	23461811	3R_23461811_SNP [dm3] 3R_27636089_SNP [dm6]	G	A	1.178e^-4	0.686	UPSTREAM Mtl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	18542911	3L_18542911_SNP [dm3] 3L_18549811_SNP [dm6]	C	A	1.180e^-4	0.686	INTERGENIC
3R	14344936	3R_14344936_SNP [dm3] 3R_18519214_SNP [dm6]	T	G	1.181e^-4	0.686	INTRON fru
3L	10900246	3L_10900246_SNP [dm3] 3L_10907146_SNP [dm6]	C	T	1.185e^-4	0.686	INTERGENIC
3R	25375548	3R_25375548_SNP [dm3] 3R_29549826_SNP [dm6]	A	C	1.191e^-4	0.686	INTERGENIC
2R	10998501	2R_10998501_SNP [dm3] 2R_15110996_SNP [dm6]	T	G	1.192e^-4	0.686	INTERGENIC
3L	3591670	3L_3591670_SNP [dm3] 3L_3591670_SNP [dm6]	G	C	1.193e^-4	0.686	INTRON Eip63E
3R	14153310	3R_14153310_SNP [dm3] 3R_18327588_SNP [dm6]	T	A	1.193e^-4	0.686	INTRON CG31235
3R	26073202	3R_26073202_SNP [dm3] 3R_30247480_SNP [dm6]	T	C	1.200e^-4	0.686	UPSTREAM CG9733 DOWNSTREAM tRNA:CR31383 INTERGENIC
3L	14142384	3L_14142384_SNP [dm3] 3L_14149284_SNP [dm6]	T	A	1.201e^-4	0.686	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25217556	3R_25217556_SNP [dm3] 3R_29391834_SNP [dm6]	C	G	1.207e^-4	0.686	INTRON Ptp99A
3R	11008848	3R_11008848_SNP [dm3] 3R_15183126_SNP [dm6]	A	T	1.209e^-4	0.686	INTRON Gyc88E
X	20218360	X_20218360_SNP [dm3] X_20347333_SNP [dm6]	C	A	1.221e^-4	0.686	INTERGENIC
3R	9817323	3R_9817323_SNP [dm3] 3R_13991601_SNP [dm6]	T	A	1.225e^-4	0.686	INTRON rdx
3R	22201384	3R_22201384_SNP [dm3] 3R_26375662_SNP [dm6]	A	T	1.227e^-4	0.686	INTERGENIC
3L	5960296	3L_5960296_SNP [dm3] 3L_5967196_SNP [dm6]	A	T	1.227e^-4	0.686	DOWNSTREAM CG10479 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
X	8956566	X_8956566_SNP [dm3] X_9062533_SNP [dm6]	T	A	1.227e^-4	0.686	INTRON CG15365
3R	23299833	3R_23299833_SNP [dm3] 3R_27474111_SNP [dm6]	A	G	1.230e^-4	0.686	INTERGENIC
3L	1595127	3L_1595127_SNP [dm3] 3L_1595127_SNP [dm6]	C	A	1.230e^-4	0.686	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14715919	2R_14715919_SNP [dm3] 2R_18828414_SNP [dm6]	C	A	1.237e^-4	0.686	INTRON CG15097
3L	11862629	3L_11862629_SNP [dm3] 3L_11869529_SNP [dm6]	C	T	1.240e^-4	0.686	DOWNSTREAM CG5906 INTRON CG44837
2R	12541911	2R_12541911_SNP [dm3] 2R_16654406_SNP [dm6]	A	T	1.240e^-4	0.686	NON_SYNONYMOUS_CODING Nach DOWNSTREAM Picot
2R	12542179	2R_12542179_SNP [dm3] 2R_16654674_SNP [dm6]	C	T	1.240e^-4	0.686	DOWNSTREAM Picot INTRON Nach
2R	12542182	2R_12542182_SNP [dm3] 2R_16654677_SNP [dm6]	A	C	1.240e^-4	0.686	DOWNSTREAM Picot INTRON Nach
3R	16867144	3R_16867144_DEL [dm3] 3R_21041422_DEL [dm6]	CAATTGTC	C	1.247e^-4	0.686	INTRON Dhc93AB	TF binding site mE1_TFBS_cad
2L	18754270	2L_18754270_SNP [dm3] 2L_18754270_SNP [dm6]	A	G	1.252e^-4	0.686	INTERGENIC
3R	25983954	3R_25983954_SNP [dm3] 3R_30158232_SNP [dm6]	G	A	1.253e^-4	0.686	INTRON CG11498	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	11036666	3L_11036666_SNP [dm3] 3L_11043566_SNP [dm6]	C	G	1.256e^-4	0.686	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
X	4094154	X_4094154_SNP [dm3] X_4200121_SNP [dm6]	C	T	1.258e^-4	0.686	INTRON Fas2	TF binding site BDTNP1_TFBS_dl
3L	12092315	3L_12092315_SNP [dm3] 3L_12099215_SNP [dm6]	A	C	1.258e^-4	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3126389	2L_3126389_SNP [dm3] 2L_3126389_SNP [dm6]	C	T	1.262e^-4	0.686	NON_SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	3477969	X_3477969_INS [dm3] X_3583936_INS [dm6]	T	TT	1.266e^-4	0.686	INTRON AstA-R1
3R	17886411	3R_17886411_SNP [dm3] 3R_22060689_SNP [dm6]	C	G	1.266e^-4	0.686	INTRON how
3R	4350226	3R_4350226_SNP [dm3] 3R_8524504_SNP [dm6]	C	T	1.272e^-4	0.686	SYNONYMOUS_CODING CG31259 DOWNSTREAM CG31454
3L	6836380	3L_6836380_SNP [dm3] 3L_6843280_SNP [dm6]	C	T	1.282e^-4	0.686	INTERGENIC	TF binding site mE1_TFBS_cad
X	5010460	X_5010460_SNP [dm3] X_5116427_SNP [dm6]	C	G	1.286e^-4	0.686	INTRON rg & 1 other
2R	16837257	2R_16837257_SNP [dm3] 2R_20949752_SNP [dm6]	C	T	1.289e^-4	0.686	UPSTREAM CG33704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	10332283	3R_10332283_SNP [dm3] 3R_14506561_SNP [dm6]	A	C	1.290e^-4	0.686	INTRON CR44177
2R	18795958	2R_18795958_SNP [dm3] 2R_22908435_SNP [dm6]	T	A	1.297e^-4	0.686	INTRON nahoda
X	12861617	X_12861617_SNP [dm3] X_12967584_SNP [dm6]	C	A	1.300e^-4	0.686	UPSTREAM Mur11Da INTERGENIC
3L	9138799	3L_9138799_SNP [dm3] 3L_9145699_SNP [dm6]	A	T	1.306e^-4	0.686	DOWNSTREAM Rdl & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	11350503	X_11350503_INS [dm3] X_11456470_INS [dm6]	A	ATGATGA	1.309e^-4	0.686
2R	19028840	2R_19028840_INS [dm3] 2R_23141317_INS [dm6]	T	TCCAT	1.319e^-4	0.686	UPSTREAM CG13544 & 1 other INTERGENIC
3L	22910302	3L_22910302_SNP [dm3] 3L_22917202_SNP [dm6]	A	G	1.320e^-4	0.686	INTRON CG12768
2R	15180312	2R_15180312_SNP [dm3] 2R_19292807_SNP [dm6]	A	T	1.320e^-4	0.686	UTR_5_PRIME Tab2 UPSTREAM mip40	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25638708	3R_25638708_SNP [dm3] 3R_29812986_SNP [dm6]	A	G	1.321e^-4	0.686	SYNONYMOUS_CODING ca	TF binding site mE1_TFBS_chinmo
3L	7909123	3L_7909123_SNP [dm3] 3L_7916023_SNP [dm6]	G	C	1.322e^-4	0.686	UPSTREAM CG8111 DOWNSTREAM syd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	1198623	X_1198623_SNP [dm3] X_1304590_SNP [dm6]	A	G	1.324e^-4	0.686	INTRON DAAM
3R	5129982	3R_5129982_SNP [dm3] 3R_9304260_SNP [dm6]	C	G	1.326e^-4	0.686	INTRON CG8861
3R	13650433	3R_13650433_SNP [dm3] 3R_17824711_SNP [dm6]	T	A	1.329e^-4	0.686	INTRON tinc
2R	15885596	2R_15885596_SNP [dm3] 2R_19998091_SNP [dm6]	T	A	1.333e^-4	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	24047609	3R_24047609_SNP [dm3] 3R_28221887_SNP [dm6]	A	C	1.333e^-4	0.686	INTRON CG34354
2R	5109293	2R_5109293_SNP [dm3] 2R_9221788_SNP [dm6]	C	G	1.343e^-4	0.686	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	16644398	2L_16644398_SNP [dm3] 2L_16644398_SNP [dm6]	G	C	1.343e^-4	0.686	INTRON CG42389	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2R	18796052	2R_18796052_SNP [dm3] 2R_22908529_SNP [dm6]	A	T	1.353e^-4	0.686	INTRON nahoda
X	20292273	X_20292273_DEL [dm3] X_20421246_DEL [dm6]	GG	G	1.353e^-4	0.686	UTR_3_PRIME Pp4-19C DOWNSTREAM Obp19d	regulatory region REDfly_CRMs
3L	4342916	3L_4342916_SNP [dm3] 3L_4342916_SNP [dm6]	G	A	1.356e^-4	0.686	INTRON Cip4
3L	10900244	3L_10900244_SNP [dm3] 3L_10907144_SNP [dm6]	A	G	1.362e^-4	0.686	INTERGENIC
3L	2203078	3L_2203078_SNP [dm3] 3L_2203078_SNP [dm6]	A	T	1.362e^-4	0.686	INTERGENIC
3R	25638728	3R_25638728_SNP [dm3] 3R_29813006_SNP [dm6]	A	C	1.364e^-4	0.686	SPLICE_SITE_REGION ca INTRON ca	TF binding site mE1_TFBS_chinmo
X	21498323	X_21498323_INS [dm3] X_21627296_INS [dm6]	A	ATA	1.365e^-4	0.686	INTRON DIP1	transposable element FlyBase
2R	13803573	2R_13803573_SNP [dm3] 2R_17916068_SNP [dm6]	T	C	1.367e^-4	0.686	INTRON Elk
3L	11113284	3L_11113284_DEL [dm3] 3L_11120184_DEL [dm6]	CTGC	C	1.371e^-4	0.686	UPSTREAM fd68A & 1 other INTRON fd68A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16998773	3L_16998773_SNP [dm3] 3L_17005673_SNP [dm6]	T	C	1.371e^-4	0.686	INTRON CG3764
3L	13310290	3L_13310290_SNP [dm3] 3L_13317190_SNP [dm6]	T	G	1.372e^-4	0.686	INTERGENIC
3L	14057292	3L_14057292_SNP [dm3] 3L_14064192_SNP [dm6]	C	T	1.384e^-4	0.689	INTRON CG32138	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	16995597	3R_16995597_SNP [dm3] 3R_21169875_SNP [dm6]	C	A	1.388e^-4	0.689	INTRON SNF4Agamma
3L	3790366	3L_3790366_SNP [dm3] 3L_3790366_SNP [dm6]	G	C	1.391e^-4	0.689	UPSTREAM CG32266 INTRON CG32264	TF binding site mE1_TFBS_bab1
3L	12033721	3L_12033721_DEL [dm3] 3L_12040621_DEL [dm6]	GTCTTCAG	G	1.393e^-4	0.689	INTRON rols
3L	6472044	3L_6472044_SNP [dm3] 3L_6478944_SNP [dm6]	G	T	1.402e^-4	0.691	INTRON CG42747
3R	6218645	3R_6218645_SNP [dm3] 3R_10392923_SNP [dm6]	A	G	1.405e^-4	0.691	INTRON cwo
3L	10455532	3L_10455532_SNP [dm3] 3L_10462432_SNP [dm6]	A	T	1.407e^-4	0.691	SYNONYMOUS_CODING Gem3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21405169	3R_21405169_SNP [dm3] 3R_25579447_SNP [dm6]	C	T	1.420e^-4	0.694	INTRON msi
3L	18577570	3L_18577570_SNP [dm3] 3L_18584470_SNP [dm6]	A	G	1.421e^-4	0.694	DOWNSTREAM CR45435 INTERGENIC
2R	17527864	2R_17527864_SNP [dm3] 2R_21640359_SNP [dm6]	A	G	1.428e^-4	0.694	INTERGENIC
2L	21078271	2L_21078271_SNP [dm3] 2L_21078271_SNP [dm6]	C	A	1.439e^-4	0.694	NON_SYNONYMOUS_CODING tadr SPLICE_SITE_REGION tadr	insulator Insulator_Class_II.mE01
3L	2202501	3L_2202501_SNP [dm3] 3L_2202501_SNP [dm6]	T	A	1.441e^-4	0.694	INTERGENIC
2R	9495479	2R_9495479_SNP [dm3] 2R_13607974_SNP [dm6]	C	A	1.442e^-4	0.694	DOWNSTREAM CG12464 INTERGENIC
3L	1850522	3L_1850522_SNP [dm3] 3L_1850522_SNP [dm6]	G	A	1.444e^-4	0.694	DOWNSTREAM CG13936 INTERGENIC
2R	7076790	2R_7076790_SNP [dm3] 2R_11189285_SNP [dm6]	G	A	1.449e^-4	0.694	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18402579	3R_18402579_SNP [dm3] 3R_22576857_SNP [dm6]	T	A	1.452e^-4	0.694	INTRON CG33110
3L	10900248	3L_10900248_SNP [dm3] 3L_10907148_SNP [dm6]	A	G	1.453e^-4	0.694	INTERGENIC
2R	4511196	2R_4511196_SNP [dm3] 2R_8623691_SNP [dm6]	C	T	1.457e^-4	0.694	UTR_3_PRIME Cirl	TF binding site mE1_TFBS_cad
3L	6092565	3L_6092565_SNP [dm3] 3L_6099465_SNP [dm6]	C	A	1.461e^-4	0.694	INTRON Ets65A
3L	13907660	3L_13907660_SNP [dm3] 3L_13914560_SNP [dm6]	C	T	1.462e^-4	0.694	INTRON Rgl
3L	19399193	3L_19399193_SNP [dm3] 3L_19406093_SNP [dm6]	G	C	1.473e^-4	0.697	DOWNSTREAM CR43966 INTRON CG32206
2R	19024849	2R_19024849_SNP [dm3] 2R_23137326_SNP [dm6]	T	G	1.479e^-4	0.698	INTERGENIC
X	3478030	X_3478030_SNP [dm3] X_3583997_SNP [dm6]	A	T	1.488e^-4	0.699	INTRON AstA-R1
2R	10382797	2R_10382797_SNP [dm3] 2R_14495292_SNP [dm6]	A	G	1.492e^-4	0.699	SYNONYMOUS_CODING L	TF binding site mE1_TFBS_cad
3L	15109465	3L_15109465_SNP [dm3] 3L_15116365_SNP [dm6]	G	A	1.496e^-4	0.699	UTR_3_PRIME CG13458 UPSTREAM Cep135	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	8133682	2R_8133682_SNP [dm3] 2R_12246177_SNP [dm6]	T	A	1.498e^-4	0.699	DOWNSTREAM CR44315 INTERGENIC
3R	23564443	3R_23564443_SNP [dm3] 3R_27738721_SNP [dm6]	T	C	1.526e^-4	0.699	INTRON Ets98B
3R	12311618	3R_12311618_SNP [dm3] 3R_16485896_SNP [dm6]	A	G	1.526e^-4	0.699	SYNONYMOUS_CODING Cad89D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7055360	X_7055360_SNP [dm3] X_7161327_SNP [dm6]	C	T	1.526e^-4	0.699	INTRON CG9650	TF binding site BDTNP1_TFBS_dl
2L	2671936	2L_2671936_SNP [dm3] 2L_2671936_SNP [dm6]	T	C	1.530e^-4	0.699	SYNONYMOUS_CODING Gr23a
3L	3591593	3L_3591593_SNP [dm3] 3L_3591593_SNP [dm6]	T	A	1.531e^-4	0.699	INTRON Eip63E
2R	12821128	2R_12821128_SNP [dm3] 2R_16933623_SNP [dm6]	T	C	1.533e^-4	0.699	INTRON Pkc53E	TF binding site BDTNP1_TFBS_twi
3L	742917	3L_742917_SNP [dm3] 3L_742917_SNP [dm6]	G	T	1.535e^-4	0.699	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	6259059	3L_6259059_SNP [dm3] 3L_6265959_SNP [dm6]	C	T	1.538e^-4	0.699	INTERGENIC
3R	21334848	3R_21334848_SNP [dm3] 3R_25509126_SNP [dm6]	C	G	1.544e^-4	0.699	DOWNSTREAM CG5111 INTERGENIC
3R	9571525	3R_9571525_SNP [dm3] 3R_13745803_SNP [dm6]	C	T	1.552e^-4	0.699	SYNONYMOUS_CODING CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7909074	3L_7909074_SNP [dm3] 3L_7915974_SNP [dm6]	C	A	1.555e^-4	0.699	UPSTREAM CG8111 DOWNSTREAM syd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	11862627	3L_11862627_SNP [dm3] 3L_11869527_SNP [dm6]	T	C	1.557e^-4	0.699	DOWNSTREAM CG5906 INTRON CG44837
2R	10998617	2R_10998617_SNP [dm3] 2R_15111112_SNP [dm6]	C	T	1.566e^-4	0.699	INTERGENIC
3L	2170084	3L_2170084_SNP [dm3] 3L_2170084_SNP [dm6]	A	C	1.568e^-4	0.699	SYNONYMOUS_CODING CG5704 UPSTREAM CG15879
3L	21774587	3L_21774587_SNP [dm3] 3L_21781487_SNP [dm6]	C	A	1.577e^-4	0.699	INTERGENIC
2R	18475339	2R_18475339_SNP [dm3] 2R_22587834_SNP [dm6]	A	C	1.585e^-4	0.699	INTRON dnr1
2R	18475340	2R_18475340_SNP [dm3] 2R_22587835_SNP [dm6]	G	A	1.585e^-4	0.699	INTRON dnr1
2R	19549641	2R_19549641_SNP [dm3] 2R_23662118_SNP [dm6]	T	C	1.586e^-4	0.699	INTRON Pde8	TF binding site BDTNP1_TFBS_dl
2L	2081089	2L_2081089_SNP [dm3] 2L_2081089_SNP [dm6]	C	T	1.587e^-4	0.699	UPSTREAM CR44808 INTRON dpr3 & 1 other
3L	11404306	3L_11404306_SNP [dm3] 3L_11411206_SNP [dm6]	T	C	1.587e^-4	0.699	INTERGENIC
3R	4354693	3R_4354693_SNP [dm3] 3R_8528971_SNP [dm6]	C	T	1.591e^-4	0.699	UPSTREAM CG11741 INTERGENIC	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	15894165	3R_15894165_SNP [dm3] 3R_20068443_SNP [dm6]	G	A	1.593e^-4	0.699	INTERGENIC
2L	15190205	2L_15190205_SNP [dm3] 2L_15190205_SNP [dm6]	T	C	1.595e^-4	0.699	INTRON CG4168
X	10413834	X_10413834_SNP [dm3] X_10519801_SNP [dm6]	A	G	1.596e^-4	0.699	INTRON spri
X	16129663	X_16129663_SNP [dm3] X_16235630_SNP [dm6]	G	A	1.596e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	2926031	X_2926031_SNP [dm3] X_3031998_SNP [dm6]	C	A	1.598e^-4	0.699	INTRON kirre
2R	20593909	2R_20593909_SNP [dm3] 2R_24706386_SNP [dm6]	C	T	1.604e^-4	0.699	INTRON Mid1	TF binding site mE1_TFBS_chinmo
3R	26595432	3R_26595432_SNP [dm3] 3R_30769710_SNP [dm6]	A	G	1.607e^-4	0.699	INTRON zfh1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1604685	3L_1604685_SNP [dm3] 3L_1604685_SNP [dm6]	T	C	1.622e^-4	0.699	UTR_5_PRIME CG33791 UTR_3_PRIME CG18170 UPSTREAM CG33791
3L	6316404	3L_6316404_SNP [dm3] 3L_6323304_SNP [dm6]	G	T	1.623e^-4	0.699	INTERGENIC
3L	7724389	3L_7724389_SNP [dm3] 3L_7731289_SNP [dm6]	A	G	1.631e^-4	0.699	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	8247179	X_8247179_SNP [dm3] X_8353146_SNP [dm6]	A	C	1.639e^-4	0.699	INTRON nAChRalpha3
2R	13242091	2R_13242091_SNP [dm3] 2R_17354586_SNP [dm6]	A	T	1.642e^-4	0.699	INTRON mbl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	2346665	2R_2346665_INS [dm3] 2R_6459160_INS [dm6]	T	TCAC	1.643e^-4	0.699	INTERGENIC	transposable element FlyBase
2R	16289150	2R_16289150_SNP [dm3] 2R_20401645_SNP [dm6]	G	A	1.644e^-4	0.699	INTERGENIC
X	9508220	X_9508220_DEL [dm3] X_9614187_DEL [dm6]	CGATCTTGGGGC...	C	1.648e^-4	0.699	INTRON CG42797
X	12861674	X_12861674_SNP [dm3] X_12967641_SNP [dm6]	G	A	1.650e^-4	0.699	UPSTREAM Mur11Da INTERGENIC
3L	4642796	3L_4642796_SNP [dm3] 3L_4642796_SNP [dm6]	T	G	1.650e^-4	0.699	NON_SYNONYMOUS_CODING axo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15356135	3L_15356135_SNP [dm3] 3L_15363035_SNP [dm6]	A	C	1.653e^-4	0.699	INTERGENIC
2R	15903063	2R_15903063_SNP [dm3] 2R_20015558_SNP [dm6]	A	C	1.653e^-4	0.699	DOWNSTREAM CR44629 & 1 other INTERGENIC
3R	23199030	3R_23199030_SNP [dm3] 3R_27373308_SNP [dm6]	G	T	1.660e^-4	0.699	DOWNSTREAM CG42534 INTERGENIC
X	8347549	X_8347549_SNP [dm3] X_8453516_SNP [dm6]	A	G	1.661e^-4	0.699	INTRON org-1
3R	4596948	3R_4596948_SNP [dm3] 3R_8771226_SNP [dm6]	C	A	1.671e^-4	0.699	DOWNSTREAM CG13318 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	8681778	3L_8681778_SNP [dm3] 3L_8688678_SNP [dm6]	A	C	1.674e^-4	0.699	INTERGENIC
3L	6255036	3L_6255036_SNP [dm3] 3L_6261936_SNP [dm6]	T	G	1.677e^-4	0.699	UPSTREAM ImpL3 INTRON ImpL3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4730187	X_4730187_SNP [dm3] X_4836154_SNP [dm6]	C	A	1.696e^-4	0.699	INTERGENIC
2R	15903310	2R_15903310_DEL [dm3] 2R_20015805_DEL [dm6]	TGA	T	1.706e^-4	0.699	DOWNSTREAM CR44630 INTERGENIC
2R	20211866	2R_20211866_SNP [dm3] 2R_24324343_SNP [dm6]	T	A	1.707e^-4	0.699	UPSTREAM CR44810 INTERGENIC
3R	10085624	3R_10085624_SNP [dm3] 3R_14259902_SNP [dm6]	A	G	1.713e^-4	0.699	SYNONYMOUS_CODING Aats-met DOWNSTREAM CG14840	TF binding site BDTNP1_TFBS_dl
3R	18401814	3R_18401814_SNP [dm3] 3R_22576092_SNP [dm6]	T	C	1.730e^-4	0.699	INTRON CG33110
2L	14214279	2L_14214279_SNP [dm3] 2L_14214279_SNP [dm6]	C	G	1.731e^-4	0.699	INTRON Dyrk2
2R	6827605	2R_6827605_SNP [dm3] 2R_10940100_SNP [dm6]	C	T	1.734e^-4	0.699	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
3L	15356097	3L_15356097_DEL [dm3] 3L_15362997_DEL [dm6]	AACAAAA	A	1.736e^-4	0.699	INTERGENIC
3L	1701818	3L_1701818_SNP [dm3] 3L_1701818_SNP [dm6]	C	G	1.736e^-4	0.699	SYNONYMOUS_CODING CG13931 INTRON CG7991	TF binding site mE1_TFBS_cad
3L	22469972	3L_22469972_DEL [dm3] 3L_22476872_DEL [dm6]	TT	T	1.737e^-4	0.699	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	19156641	2L_19156641_SNP [dm3] 2L_19156641_SNP [dm6]	A	T	1.738e^-4	0.699	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	646679	3L_646679_DEL [dm3] 3L_646679_DEL [dm6]	TT	T	1.745e^-4	0.699	INTERGENIC
3R	23791662	3R_23791662_SNP [dm3] 3R_27965940_SNP [dm6]	C	T	1.747e^-4	0.699	SYNONYMOUS_CODING CG4849	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	10345424	2R_10345424_SNP [dm3] 2R_14457919_SNP [dm6]	C	T	1.751e^-4	0.699	UPSTREAM Oaz INTRON Oaz	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	5979576	3L_5979576_INS [dm3] 3L_5986476_INS [dm6]	C	CG	1.753e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	4683396	3L_4683396_SNP [dm3] 3L_4683396_SNP [dm6]	T	G	1.754e^-4	0.699	INTRON axo
3L	2202502	3L_2202502_SNP [dm3] 3L_2202502_SNP [dm6]	C	T	1.758e^-4	0.699	INTERGENIC
2R	8133288	2R_8133288_SNP [dm3] 2R_12245783_SNP [dm6]	C	G	1.759e^-4	0.699	DOWNSTREAM CR44315 INTERGENIC
3R	5185243	3R_5185243_SNP [dm3] 3R_9359521_SNP [dm6]	T	C	1.771e^-4	0.699	UTR_3_PRIME CG45050 DOWNSTREAM CG45050 & 1 other
3L	7470811	3L_7470811_SNP [dm3] 3L_7477711_SNP [dm6]	A	T	1.778e^-4	0.699	INTERGENIC
3L	15356108	3L_15356108_SNP [dm3] 3L_15363008_SNP [dm6]	A	C	1.779e^-4	0.699	INTERGENIC
3L	15356109	3L_15356109_SNP [dm3] 3L_15363009_SNP [dm6]	T	A	1.779e^-4	0.699	INTERGENIC
3R	13600041	3R_13600041_SNP [dm3] 3R_17774319_SNP [dm6]	C	T	1.783e^-4	0.699	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3L	4307142	3L_4307142_SNP [dm3] 3L_4307142_SNP [dm6]	T	G	1.788e^-4	0.699	INTRON dyl
X	456143	X_456143_SNP [dm3] X_562110_SNP [dm6]	G	C	1.789e^-4	0.699	INTRON Appl
X	5850037	X_5850037_SNP [dm3] X_5956004_SNP [dm6]	G	A	1.792e^-4	0.699	INTRON CG6067
2R	12551693	2R_12551693_SNP [dm3] 2R_16664188_SNP [dm6]	C	T	1.795e^-4	0.699	UTR_5_PRIME Picot UPSTREAM Picot
3L	16727487	3L_16727487_SNP [dm3] 3L_16734387_SNP [dm6]	C	T	1.800e^-4	0.699	INTRON CG9701
3R	4363255	3R_4363255_SNP [dm3] 3R_8537533_SNP [dm6]	A	G	1.803e^-4	0.699	INTERGENIC
X	5039294	X_5039294_SNP [dm3] X_5145261_SNP [dm6]	C	G	1.809e^-4	0.699	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl
3L	13310271	3L_13310271_SNP [dm3] 3L_13317171_SNP [dm6]	C	T	1.811e^-4	0.699	INTERGENIC
2L	2930809	2L_2930809_SNP [dm3] 2L_2930809_SNP [dm6]	T	C	1.818e^-4	0.699	INTRON lilli
3L	21770308	3L_21770308_SNP [dm3] 3L_21777208_SNP [dm6]	G	A	1.819e^-4	0.699	DOWNSTREAM CG42689 INTRON CG42552	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16424980	2R_16424980_SNP [dm3] 2R_20537475_SNP [dm6]	G	A	1.825e^-4	0.699	SYNONYMOUS_CODING CG13423
3R	25987118	3R_25987118_SNP [dm3] 3R_30161396_SNP [dm6]	G	A	1.826e^-4	0.699	UPSTREAM CG11498 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17754743	2L_17754743_SNP [dm3] 2L_17754743_SNP [dm6]	C	T	1.827e^-4	0.699	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10082541	2L_10082541_SNP [dm3] 2L_10082541_SNP [dm6]	A	G	1.838e^-4	0.699	INTRON CG44153
3L	2122361	3L_2122361_SNP [dm3] 3L_2122361_SNP [dm6]	G	C	1.841e^-4	0.699	DOWNSTREAM zormin INTRON zormin
3R	5125153	3R_5125153_SNP [dm3] 3R_9299431_SNP [dm6]	G	C	1.845e^-4	0.699	INTRON CG8861
2L	9485629	2L_9485629_SNP [dm3] 2L_9485629_SNP [dm6]	G	A	1.848e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2930805	2L_2930805_SNP [dm3] 2L_2930805_SNP [dm6]	C	T	1.849e^-4	0.699	INTRON lilli
2R	20328947	2R_20328947_SNP [dm3] 2R_24441424_SNP [dm6]	T	C	1.852e^-4	0.699	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	12023867	3L_12023867_SNP [dm3] 3L_12030767_SNP [dm6]	C	T	1.853e^-4	0.699	INTRON rols	TF binding site mE1_TFBS_cad
2R	21076580	2R_21076580_SNP [dm3] 2R_25189057_SNP [dm6]	C	T	1.853e^-4	0.699	UPSTREAM CG9380 INTRON CG9380
2L	4205206	2L_4205206_SNP [dm3] 2L_4205206_SNP [dm6]	T	C	1.857e^-4	0.699	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23199096	3R_23199096_SNP [dm3] 3R_27373374_SNP [dm6]	T	A	1.858e^-4	0.699	DOWNSTREAM CG42534 INTERGENIC
3L	13479495	3L_13479495_SNP [dm3] 3L_13486395_SNP [dm6]	C	A	1.873e^-4	0.699	UPSTREAM Tgi & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	15323964	3L_15323964_SNP [dm3] 3L_15330864_SNP [dm6]	C	A	1.874e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21026687	2L_21026687_SNP [dm3] 2L_21026687_SNP [dm6]	C	G	1.874e^-4	0.699	INTRON CG42238	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3591657	3L_3591657_SNP [dm3] 3L_3591657_SNP [dm6]	T	C	1.887e^-4	0.699	INTRON Eip63E
3L	7573606	3L_7573606_SNP [dm3] 3L_7580506_SNP [dm6]	T	C	1.893e^-4	0.699	INTERGENIC
3L	14489459	3L_14489459_SNP [dm3] 3L_14496359_SNP [dm6]	G	C	1.901e^-4	0.699	INTRON bbg	TF binding site mE1_TFBS_cad
X	8247157	X_8247157_SNP [dm3] X_8353124_SNP [dm6]	T	C	1.913e^-4	0.699	INTRON nAChRalpha3
3L	15356106	3L_15356106_SNP [dm3] 3L_15363006_SNP [dm6]	A	T	1.915e^-4	0.699	INTERGENIC
3L	6092239	3L_6092239_SNP [dm3] 3L_6099139_SNP [dm6]	A	G	1.923e^-4	0.699	INTRON Ets65A
3R	21405190	3R_21405190_SNP [dm3] 3R_25579468_SNP [dm6]	A	G	1.934e^-4	0.699	INTRON msi
3R	21470256	3R_21470256_SNP [dm3] 3R_25644534_SNP [dm6]	C	A	1.937e^-4	0.699	INTRON jigr1
3R	17861130	3R_17861130_SNP [dm3] 3R_22035408_SNP [dm6]	A	G	1.938e^-4	0.699	UTR_3_PRIME Fadd UPSTREAM pit & 1 other INTRON pit	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3L	6253710	3L_6253710_SNP [dm3] 3L_6260610_SNP [dm6]	C	T	1.942e^-4	0.699	SYNONYMOUS_CODING ImpL3
2R	12539181	2R_12539181_SNP [dm3] 2R_16651676_SNP [dm6]	G	C	1.951e^-4	0.699	SYNONYMOUS_CODING Amyrel DOWNSTREAM gprs	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	1195169	X_1195169_SNP [dm3] X_1301136_SNP [dm6]	C	T	1.957e^-4	0.699	INTRON DAAM
2R	6827590	2R_6827590_SNP [dm3] 2R_10940085_SNP [dm6]	A	T	1.963e^-4	0.699	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
2L	16644018	2L_16644018_SNP [dm3] 2L_16644018_SNP [dm6]	G	C	1.964e^-4	0.699	INTRON CG42389	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	14357173	3L_14357173_SNP [dm3] 3L_14364073_SNP [dm6]	T	A	1.965e^-4	0.699	INTRON fz	TF binding site BDTNP1_TFBS_da
3L	5053715	3L_5053715_SNP [dm3] 3L_5053715_SNP [dm6]	T	A	1.971e^-4	0.699	INTRON Con
3R	21470242	3R_21470242_SNP [dm3] 3R_25644520_SNP [dm6]	T	A	1.976e^-4	0.699	INTRON jigr1
3R	21470250	3R_21470250_SNP [dm3] 3R_25644528_SNP [dm6]	A	G	1.976e^-4	0.699	INTRON jigr1
2R	18913817	2R_18913817_SNP [dm3] 2R_23026294_SNP [dm6]	T	G	1.978e^-4	0.699	INTRON twi & 1 other
2R	16079729	2R_16079729_SNP [dm3] 2R_20192224_SNP [dm6]	A	G	1.980e^-4	0.699	INTERGENIC
3L	13310275	3L_13310275_SNP [dm3] 3L_13317175_SNP [dm6]	C	A	1.981e^-4	0.699	INTERGENIC
X	9986183	X_9986183_INS [dm3] X_10092150_INS [dm6]	C	CA	1.982e^-4	0.699	INTRON RhoU	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18796056	2R_18796056_SNP [dm3] 2R_22908533_SNP [dm6]	A	T	1.983e^-4	0.699	INTRON nahoda
2R	6827411	2R_6827411_SNP [dm3] 2R_10939906_SNP [dm6]	A	G	1.983e^-4	0.699	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
3L	12262653	3L_12262653_SNP [dm3] 3L_12269553_SNP [dm6]	G	C	1.988e^-4	0.699	UTR_3_PRIME CG32100 & 1 other DOWNSTREAM Pbgs
3L	5979581	3L_5979581_SNP [dm3] 3L_5986481_SNP [dm6]	C	A	1.993e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	743728	X_743728_SNP [dm3] X_849695_SNP [dm6]	C	T	1.999e^-4	0.699	INTRON CG43867
X	16709850	X_16709850_SNP [dm3] X_16815817_SNP [dm6]	A	G	2.007e^-4	0.699	INTRON CG4829 EXON CR44129
2R	21076783	2R_21076783_SNP [dm3] 2R_25189260_SNP [dm6]	G	A	2.011e^-4	0.699	UPSTREAM CG9380 INTRON CG9380	transposable element FlyBase
2L	8766635	2L_8766635_SNP [dm3] 2L_8766635_SNP [dm6]	T	A	2.012e^-4	0.699	INTRON CG9463
3L	10397714	3L_10397714_SNP [dm3] 3L_10404614_SNP [dm6]	A	C	2.019e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	5114404	2R_5114404_SNP [dm3] 2R_9226899_SNP [dm6]	G	C	2.030e^-4	0.699	DOWNSTREAM hig INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5734725	3L_5734725_SNP [dm3] 3L_5741625_SNP [dm6]	A	G	2.040e^-4	0.699	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_chinmo
3L	6055139	3L_6055139_SNP [dm3] 3L_6062039_SNP [dm6]	T	C	2.040e^-4	0.699	DOWNSTREAM CG6592 INTRON CG10472
2L	12643654	2L_12643654_INS [dm3] 2L_12643654_INS [dm6]	T	TTTAT	2.040e^-4	0.699	INTRON Ref2
3L	2576898	3L_2576898_SNP [dm3] 3L_2576898_SNP [dm6]	G	T	2.044e^-4	0.699	INTRON msn	regulatory region REDfly_CRMs
3L	6253803	3L_6253803_SNP [dm3] 3L_6260703_SNP [dm6]	G	A	2.051e^-4	0.699	SYNONYMOUS_CODING ImpL3
2R	20605740	2R_20605740_SNP [dm3] 2R_24718217_SNP [dm6]	G	C	2.059e^-4	0.699	INTRON Mid1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12458064	2R_12458064_SNP [dm3] 2R_16570559_SNP [dm6]	A	G	2.061e^-4	0.699	DOWNSTREAM CG4945 INTRON RpS15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14357158	3L_14357158_SNP [dm3] 3L_14364058_SNP [dm6]	C	A	2.062e^-4	0.699	INTRON fz	TF binding site BDTNP1_TFBS_da
3R	9552344	3R_9552344_SNP [dm3] 3R_13726622_SNP [dm6]	A	T	2.062e^-4	0.699	INTRON CG34383
2R	3867567	2R_3867567_SNP [dm3] 2R_7980062_SNP [dm6]	A	G	2.065e^-4	0.699	SYNONYMOUS_CODING ACC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	21470261	3R_21470261_SNP [dm3] 3R_25644539_SNP [dm6]	G	T	2.074e^-4	0.699	INTRON jigr1
2R	12542157	2R_12542157_SNP [dm3] 2R_16654652_SNP [dm6]	C	T	2.074e^-4	0.699	DOWNSTREAM Picot INTRON Nach
X	5721205	X_5721205_SNP [dm3] X_5827172_SNP [dm6]	A	G	2.084e^-4	0.699	INTRON CG15765
X	8156894	X_8156894_INS [dm3] X_8262861_INS [dm6]	T	TTCCACGCTCCGAACCAAAT...	2.090e^-4	0.699	INTRON CG1632	TF binding site BDTNP1_TFBS_da
3R	20819924	3R_20819924_SNP [dm3] 3R_24994202_SNP [dm6]	C	A	2.093e^-4	0.699	INTRON tnc
3R	21657604	3R_21657604_SNP [dm3] 3R_25831882_SNP [dm6]	C	T	2.095e^-4	0.699	UTR_5_PRIME Mst57Da UPSTREAM Mst57Db & 1 other
3L	5517734	3L_5517734_SNP [dm3] 3L_5524634_SNP [dm6]	C	T	2.099e^-4	0.699	INTRON Lkr
3R	25812226	3R_25812226_SNP [dm3] 3R_29986504_SNP [dm6]	T	C	2.100e^-4	0.699	SYNONYMOUS_CODING CG7896	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	6561778	2R_6561778_INS [dm3] 2R_10674273_INS [dm6]	G	GGG	2.103e^-4	0.699	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25043954	3R_25043954_SNP [dm3] 3R_29218232_SNP [dm6]	T	A	2.103e^-4	0.699	DOWNSTREAM mir-996 INTRON CR31044 EXON CR31044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5243605	3L_5243605_DEL [dm3] 3L_5250505_DEL [dm6]	AT	A	2.104e^-4	0.699	INTRON shep
2L	19129700	2L_19129700_SNP [dm3] 2L_19129700_SNP [dm6]	A	G	2.105e^-4	0.699	UTR_3_PRIME Aats-asn DOWNSTREAM Aats-asn & 1 other	TF binding site mE1_TFBS_cad
3R	24710587	3R_24710587_SNP [dm3] 3R_28884865_SNP [dm6]	A	G	2.105e^-4	0.699	SYNONYMOUS_CODING CG14526 INTRON CG33203	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	17156423	2R_17156423_SNP [dm3] 2R_21268918_SNP [dm6]	C	A	2.110e^-4	0.699	INTRON Rgk3
2R	15903314	2R_15903314_SNP [dm3] 2R_20015809_SNP [dm6]	A	C	2.114e^-4	0.699	DOWNSTREAM CR44630 INTERGENIC
X	17313839	X_17313839_SNP [dm3] X_17419806_SNP [dm6]	G	A	2.124e^-4	0.699	SYNONYMOUS_CODING CG8611	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5646808	X_5646808_SNP [dm3] X_5752775_SNP [dm6]	C	G	2.127e^-4	0.699	DOWNSTREAM CG4078 & 1 other INTRON CG15772	TF binding site mE1_TFBS_cad
X	3380974	X_3380974_SNP [dm3] X_3486941_SNP [dm6]	G	A	2.132e^-4	0.699	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3381085	X_3381085_SNP [dm3] X_3487052_SNP [dm6]	G	C	2.132e^-4	0.699	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10158695	X_10158695_INS [dm3] X_10264662_INS [dm6]	G	GG	2.140e^-4	0.699	UTR_3_PRIME CG12643
3L	6255006	3L_6255006_SNP [dm3] 3L_6261906_SNP [dm6]	G	C	2.158e^-4	0.699	UPSTREAM ImpL3 INTRON ImpL3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23471331	3R_23471331_SNP [dm3] 3R_27645609_SNP [dm6]	T	G	2.159e^-4	0.699	INTRON tau	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
3R	15894113	3R_15894113_DEL [dm3] 3R_20068391_DEL [dm6]	TGTTTA	T	2.164e^-4	0.699	INTERGENIC
3L	12848159	3L_12848159_SNP [dm3] 3L_12855059_SNP [dm6]	T	A	2.173e^-4	0.699	INTRON Ent3
3R	13599046	3R_13599046_SNP [dm3] 3R_17773324_SNP [dm6]	G	A	2.175e^-4	0.699	SYNONYMOUS_CODING CG43102
2R	16750248	2R_16750248_SNP [dm3] 2R_20862743_SNP [dm6]	G	A	2.175e^-4	0.699	INTERGENIC
X	3375366	X_3375366_SNP [dm3] X_3481333_SNP [dm6]	T	A	2.176e^-4	0.699	START_GAINED CG10804 UTR_5_PRIME CG10804 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	10628425	3R_10628425_SNP [dm3] 3R_14802703_SNP [dm6]	C	A	2.183e^-4	0.699	INTRON CG14857
3R	15894172	3R_15894172_SNP [dm3] 3R_20068450_SNP [dm6]	T	A	2.191e^-4	0.699	INTERGENIC
2R	9810502	2R_9810502_DEL [dm3] 2R_13922997_DEL [dm6]	CC	C	2.191e^-4	0.699	INTRON shot	TF binding site mE1_TFBS_D
3L	3798732	3L_3798732_SNP [dm3] 3L_3798732_SNP [dm6]	A	T	2.193e^-4	0.699	INTRON CG32264
3R	13592092	3R_13592092_SNP [dm3] 3R_17766370_SNP [dm6]	A	G	2.196e^-4	0.699	INTERGENIC
2R	6827369	2R_6827369_SNP [dm3] 2R_10939864_SNP [dm6]	A	C	2.196e^-4	0.699	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
2R	6827399	2R_6827399_SNP [dm3] 2R_10939894_SNP [dm6]	G	A	2.197e^-4	0.699	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
X	17584525	X_17584525_SNP [dm3] X_17690492_SNP [dm6]	C	T	2.199e^-4	0.699	INTRON chas
X	12718677	X_12718677_SNP [dm3] X_12824644_SNP [dm6]	G	C	2.205e^-4	0.699	INTRON Pde9
X	2669523	X_2669523_SNP [dm3] X_2775490_SNP [dm6]	A	C	2.215e^-4	0.699	INTRON kirre
2L	19693063	2L_19693063_SNP [dm3] 2L_19693063_SNP [dm6]	A	T	2.215e^-4	0.699	INTRON Lar	TF binding site BDTNP1_TFBS_dl
2L	16239362	2L_16239362_SNP [dm3] 2L_16239362_SNP [dm6]	T	A	2.219e^-4	0.699	SYNONYMOUS_CODING CG42817
3R	16280212	3R_16280212_SNP [dm3] 3R_20454490_SNP [dm6]	C	T	2.222e^-4	0.699	INTRON Gfrl
3R	23199080	3R_23199080_SNP [dm3] 3R_27373358_SNP [dm6]	C	T	2.222e^-4	0.699	DOWNSTREAM CG42534 INTERGENIC
2L	13700394	2L_13700394_SNP [dm3] 2L_13700394_SNP [dm6]	C	A	2.224e^-4	0.699	INTRON CG31814
2R	17209028	2R_17209028_SNP [dm3] 2R_21321523_SNP [dm6]	T	A	2.232e^-4	0.699	SYNONYMOUS_CODING CG30394
2R	17209061	2R_17209061_SNP [dm3] 2R_21321556_SNP [dm6]	A	T	2.232e^-4	0.699	SYNONYMOUS_CODING CG30394
2R	17209277	2R_17209277_SNP [dm3] 2R_21321772_SNP [dm6]	A	T	2.232e^-4	0.699	INTRON CG30394
2R	17209296	2R_17209296_SNP [dm3] 2R_21321791_SNP [dm6]	C	A	2.232e^-4	0.699	INTRON CG30394
3L	3090995	3L_3090995_SNP [dm3] 3L_3090995_SNP [dm6]	C	T	2.233e^-4	0.699	UTR_3_PRIME Cht7 DOWNSTREAM CG11486 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	743084	3L_743084_INS [dm3] 3L_743084_INS [dm6]	T	TT	2.233e^-4	0.699	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	8447066	2L_8447066_SNP [dm3] 2L_8447066_SNP [dm6]	C	G	2.233e^-4	0.699	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_inv
3L	5053736	3L_5053736_SNP [dm3] 3L_5053736_SNP [dm6]	A	T	2.238e^-4	0.699	INTRON Con
3L	6254991	3L_6254991_SNP [dm3] 3L_6261891_SNP [dm6]	T	C	2.245e^-4	0.699	UPSTREAM ImpL3 INTRON ImpL3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7483205	X_7483205_DEL [dm3] X_7589172_DEL [dm6]	TT	T	2.246e^-4	0.699	INTERGENIC	regulatory region REDfly_CRMs
X	15567733	X_15567733_SNP [dm3] X_15673700_SNP [dm6]	T	C	2.249e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	5979413	3L_5979413_SNP [dm3] 3L_5986313_SNP [dm6]	T	G	2.252e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20272008	X_20272008_SNP [dm3] X_20400981_SNP [dm6]	G	A	2.258e^-4	0.699	SYNONYMOUS_CODING HERC2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3591587	3L_3591587_SNP [dm3] 3L_3591587_SNP [dm6]	C	T	2.262e^-4	0.699	INTRON Eip63E
2R	16422358	2R_16422358_SNP [dm3] 2R_20534853_SNP [dm6]	T	C	2.263e^-4	0.699	SYNONYMOUS_CODING CG18067 DOWNSTREAM CG30154
2R	2431681	2R_2431681_DEL [dm3] 2R_6544176_DEL [dm6]	ATTGGATACGGGGT...	A	2.264e^-4	0.699	INTRON jing	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12519653	3L_12519653_SNP [dm3] 3L_12526553_SNP [dm6]	G	A	2.265e^-4	0.699	DOWNSTREAM nst INTRON eIF-2beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	742992	3L_742992_DEL [dm3] 3L_742992_DEL [dm6]	ATGGTTTTTGATAACTAA...	A	2.266e^-4	0.699	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	13812520	2L_13812520_SNP [dm3] 2L_13812520_SNP [dm6]	C	A	2.270e^-4	0.699	SYNONYMOUS_CODING CG16865 DOWNSTREAM CG16888	TF binding site mE1_TFBS_sens
2R	15188574	2R_15188574_DEL [dm3] 2R_19301069_DEL [dm6]	AA	A	2.274e^-4	0.699	INTRON Tab2	TF binding site mE1_TFBS_inv
3L	3354928	3L_3354928_SNP [dm3] 3L_3354928_SNP [dm6]	G	T	2.276e^-4	0.699	INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	8681879	3R_8681879_SNP [dm3] 3R_12856157_SNP [dm6]	A	G	2.280e^-4	0.699	SYNONYMOUS_CODING CG10126
3L	14357184	3L_14357184_INS [dm3] 3L_14364084_INS [dm6]	T	TCCTTTAAT	2.283e^-4	0.699	INTRON fz	TF binding site BDTNP1_TFBS_da
3L	14357199	3L_14357199_SNP [dm3] 3L_14364099_SNP [dm6]	C	A	2.283e^-4	0.699	INTRON fz	TF binding site BDTNP1_TFBS_da
3R	15894120	3R_15894120_SNP [dm3] 3R_20068398_SNP [dm6]	G	A	2.288e^-4	0.699	INTERGENIC
2R	6333654	2R_6333654_SNP [dm3] 2R_10446149_SNP [dm6]	C	T	2.291e^-4	0.699	INTRON Galphao
3R	18474505	3R_18474505_SNP [dm3] 3R_22648783_SNP [dm6]	T	G	2.296e^-4	0.699	INTRON CG45058
3R	17786912	3R_17786912_DEL [dm3] 3R_21961190_DEL [dm6]	CTAGGTGGCTTAAGC...	C	2.297e^-4	0.699	INTRON Eip93F
3R	3341617	3R_3341617_DEL [dm3] 3R_7515895_DEL [dm6]	TTGCT	T	2.298e^-4	0.699	UPSTREAM alpha-Est8 INTERGENIC
3L	5053712	3L_5053712_SNP [dm3] 3L_5053712_SNP [dm6]	C	T	2.302e^-4	0.699	INTRON Con
2L	8746447	2L_8746447_SNP [dm3] 2L_8746447_SNP [dm6]	C	A	2.303e^-4	0.699	INTERGENIC
2L	11009910	2L_11009910_SNP [dm3] 2L_11009910_SNP [dm6]	C	T	2.307e^-4	0.699	UTR_3_PRIME Nup154 & 1 other DOWNSTREAM Nup154
2L	20437870	2L_20437870_SNP [dm3] 2L_20437870_SNP [dm6]	A	T	2.307e^-4	0.699	UPSTREAM CR43607 INTRON CG31688 & 1 other
3L	6254094	3L_6254094_SNP [dm3] 3L_6260994_SNP [dm6]	C	T	2.308e^-4	0.699	UTR_5_PRIME ImpL3 INTRON ImpL3
3L	2432886	3L_2432886_SNP [dm3] 3L_2432886_SNP [dm6]	T	G	2.309e^-4	0.699	INTRON CG45186
3R	26074235	3R_26074235_SNP [dm3] 3R_30248513_SNP [dm6]	G	T	2.316e^-4	0.699	UPSTREAM tRNA:CR31383 DOWNSTREAM tRNA:CR31023 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8689344	3L_8689344_SNP [dm3] 3L_8696244_SNP [dm6]	A	G	2.322e^-4	0.699	INTERGENIC
X	20262267	X_20262267_SNP [dm3] X_20391240_SNP [dm6]	A	G	2.323e^-4	0.699	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15894124	3R_15894124_DEL [dm3] 3R_20068402_DEL [dm6]	TCTTTTAAAG	T	2.333e^-4	0.699	INTERGENIC
2R	19651890	2R_19651890_SNP [dm3] 2R_23764367_SNP [dm6]	G	A	2.336e^-4	0.699	INTRON CG9850
3R	26647256	3R_26647256_SNP [dm3] 3R_30821534_SNP [dm6]	C	A	2.346e^-4	0.699	UPSTREAM cindr INTRON cindr	TF binding site BDTNP1_TFBS_z
3L	3833006	3L_3833006_SNP [dm3] 3L_3833006_SNP [dm6]	G	A	2.352e^-4	0.699	SYNONYMOUS_CODING enc
X	1192858	X_1192858_SNP [dm3] X_1298825_SNP [dm6]	C	A	2.359e^-4	0.699	UPSTREAM CG32811 INTRON DAAM	TF binding site mE1_TFBS_chinmo
3L	20889568	3L_20889568_SNP [dm3] 3L_20896468_SNP [dm6]	C	T	2.368e^-4	0.699	UTR_3_PRIME Sfp77F DOWNSTREAM Sfp77F
3R	17861144	3R_17861144_SNP [dm3] 3R_22035422_SNP [dm6]	C	G	2.370e^-4	0.699	UTR_3_PRIME Fadd UPSTREAM pit & 1 other INTRON pit	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	22676664	3R_22676664_SNP [dm3] 3R_26850942_SNP [dm6]	T	C	2.373e^-4	0.699	INTRON Lerp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	19572529	X_19572529_SNP [dm3] X_19678496_SNP [dm6]	C	A	2.376e^-4	0.699	SYNONYMOUS_CODING dome	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	1174827	X_1174827_SNP [dm3] X_1280794_SNP [dm6]	G	A	2.381e^-4	0.699	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	5721039	X_5721039_SNP [dm3] X_5827006_SNP [dm6]	A	G	2.384e^-4	0.699	INTRON CG15765
3L	492808	3L_492808_SNP [dm3] 3L_492808_SNP [dm6]	A	G	2.401e^-4	0.699	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11862757	3L_11862757_SNP [dm3] 3L_11869657_SNP [dm6]	G	T	2.407e^-4	0.699	DOWNSTREAM CG5906 INTRON CG44837
3R	27189893	3R_27189893_SNP [dm3] 3R_31364171_SNP [dm6]	G	A	2.411e^-4	0.699	INTRON CG34347
2R	8996901	2R_8996901_SNP [dm3] 2R_13109396_SNP [dm6]	C	A	2.415e^-4	0.699	INTERGENIC
2L	7100263	2L_7100263_SNP [dm3] 2L_7100263_SNP [dm6]	T	A	2.421e^-4	0.699	INTRON Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14835412	3L_14835412_SNP [dm3] 3L_14842312_SNP [dm6]	C	A	2.427e^-4	0.699	INTRON CG17839
3R	3310339	3R_3310339_SNP [dm3] 3R_7484617_SNP [dm6]	T	C	2.435e^-4	0.699	INTERGENIC
3L	2307155	3L_2307155_SNP [dm3] 3L_2307155_SNP [dm6]	A	G	2.439e^-4	0.699	INTERGENIC
3R	20888450	3R_20888450_SNP [dm3] 3R_25062728_SNP [dm6]	T	C	2.448e^-4	0.699	SYNONYMOUS_CODING Unc-13-4B
2L	16644133	2L_16644133_SNP [dm3] 2L_16644133_SNP [dm6]	T	A	2.456e^-4	0.699	INTRON CG42389	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2L	16644155	2L_16644155_SNP [dm3] 2L_16644155_SNP [dm6]	G	T	2.456e^-4	0.699	INTRON CG42389	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3L	14357202	3L_14357202_SNP [dm3] 3L_14364102_SNP [dm6]	G	C	2.458e^-4	0.699	INTRON fz	TF binding site BDTNP1_TFBS_da mE1_TFBS_D
3L	14357209	3L_14357209_SNP [dm3] 3L_14364109_SNP [dm6]	T	C	2.458e^-4	0.699	INTRON fz	TF binding site BDTNP1_TFBS_da mE1_TFBS_D
3R	26647307	3R_26647307_SNP [dm3] 3R_30821585_SNP [dm6]	A	G	2.464e^-4	0.699	UPSTREAM cindr INTRON cindr	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
3L	9922201	3L_9922201_SNP [dm3] 3L_9929101_SNP [dm6]	G	T	2.466e^-4	0.699	INTRON CG34356
2R	17615966	2R_17615966_DEL [dm3] 2R_21728461_DEL [dm6]	ATACA	A	2.467e^-4	0.699	UPSTREAM CR44750 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3731065	3L_3731065_DEL [dm3] 3L_3731065_DEL [dm6]	ACACAAT	A	2.467e^-4	0.699	INTRON CG32264
X	1191970	X_1191970_SNP [dm3] X_1297937_SNP [dm6]	G	A	2.470e^-4	0.699	DOWNSTREAM CG32811 INTRON DAAM
3R	18610586	3R_18610586_SNP [dm3] 3R_22784864_SNP [dm6]	C	T	2.477e^-4	0.699	SYNONYMOUS_CODING CG7029 INTRON CG7029	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10315416	3R_10315416_SNP [dm3] 3R_14489694_SNP [dm6]	G	T	2.478e^-4	0.699	INTERGENIC
3R	10315418	3R_10315418_INS [dm3] 3R_14489696_INS [dm6]	GA	ATC	2.478e^-4	0.699	INTERGENIC
3L	5652702	3L_5652702_SNP [dm3] 3L_5659602_SNP [dm6]	A	T	2.481e^-4	0.699	UTR_5_PRIME sif DOWNSTREAM Sse
3L	11399200	3L_11399200_SNP [dm3] 3L_11406100_SNP [dm6]	T	G	2.484e^-4	0.699	DOWNSTREAM CR44363 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cnc
3L	1361155	3L_1361155_SNP [dm3] 3L_1361155_SNP [dm6]	T	C	2.485e^-4	0.699	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	10811284	3R_10811284_SNP [dm3] 3R_14985562_SNP [dm6]	G	A	2.490e^-4	0.699	INTERGENIC
3R	11420370	3R_11420370_SNP [dm3] 3R_15594648_SNP [dm6]	A	T	2.495e^-4	0.699	INTERGENIC
2L	11388359	2L_11388359_SNP [dm3] 2L_11388359_SNP [dm6]	G	C	2.499e^-4	0.699	EXON CR43681	regulatory region REDfly_CRMs
3L	8681804	3L_8681804_SNP [dm3] 3L_8688704_SNP [dm6]	A	C	2.509e^-4	0.699	INTERGENIC
3L	2480256	3L_2480256_SNP [dm3] 3L_2480256_SNP [dm6]	G	A	2.510e^-4	0.699	INTRON CG45186	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4683388	3L_4683388_SNP [dm3] 3L_4683388_SNP [dm6]	T	C	2.511e^-4	0.699	INTRON axo
3L	2388218	3L_2388218_INS [dm3] 3L_2388218_INS [dm6]	C	CGGCC	2.518e^-4	0.699	UTR_5_PRIME CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	11386624	3L_11386624_SNP [dm3] 3L_11393524_SNP [dm6]	A	G	2.522e^-4	0.699	INTERGENIC
2R	20316757	2R_20316757_SNP [dm3] 2R_24429234_SNP [dm6]	A	G	2.523e^-4	0.699	UPSTREAM prom DOWNSTREAM CG15873 INTERGENIC
2R	15883771	2R_15883771_SNP [dm3] 2R_19996266_SNP [dm6]	G	A	2.526e^-4	0.699	INTERGENIC
3R	18638221	3R_18638221_SNP [dm3] 3R_22812499_SNP [dm6]	A	G	2.528e^-4	0.699	INTERGENIC
3L	1293874	3L_1293874_SNP [dm3] 3L_1293874_SNP [dm6]	G	A	2.529e^-4	0.699	SYNONYMOUS_CODING CG32333
3L	17283697	3L_17283697_SNP [dm3] 3L_17290597_SNP [dm6]	G	C	2.532e^-4	0.699	INTERGENIC
3L	20746112	3L_20746112_SNP [dm3] 3L_20753012_SNP [dm6]	C	T	2.535e^-4	0.699	INTERGENIC
3L	13310093	3L_13310093_INS [dm3] 3L_13316993_INS [dm6]	T	TAAGTCTTTTA...	2.545e^-4	0.699	INTERGENIC
2R	12540369	2R_12540369_SNP [dm3] 2R_16652864_SNP [dm6]	G	C	2.546e^-4	0.699	UPSTREAM Amyrel DOWNSTREAM Nach INTERGENIC
2R	16459010	2R_16459010_SNP [dm3] 2R_20571505_SNP [dm6]	G	A	2.550e^-4	0.699	INTRON qsm
3R	5325738	3R_5325738_SNP [dm3] 3R_9500016_SNP [dm6]	A	G	2.556e^-4	0.699	INTRON RhoL
3L	1727047	3L_1727047_SNP [dm3] 3L_1727047_SNP [dm6]	G	A	2.557e^-4	0.699	INTRON drpr
2R	3811851	2R_3811851_SNP [dm3] 2R_7924346_SNP [dm6]	T	A	2.568e^-4	0.699	SYNONYMOUS_CODING Kdm4A	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_sens
3L	3791487	3L_3791487_SNP [dm3] 3L_3791487_SNP [dm6]	T	C	2.571e^-4	0.699	UTR_3_PRIME CG32266 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16644020	2L_16644020_SNP [dm3] 2L_16644020_SNP [dm6]	C	A	2.574e^-4	0.699	INTRON CG42389	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3L	3833027	3L_3833027_SNP [dm3] 3L_3833027_SNP [dm6]	A	G	2.575e^-4	0.699	INTRON enc
3R	15894121	3R_15894121_SNP [dm3] 3R_20068399_SNP [dm6]	C	A	2.577e^-4	0.699	INTERGENIC
3L	6259297	3L_6259297_SNP [dm3] 3L_6266197_SNP [dm6]	G	A	2.579e^-4	0.699	INTERGENIC
3R	4364876	3R_4364876_SNP [dm3] 3R_8539154_SNP [dm6]	A	G	2.581e^-4	0.699	INTERGENIC
3R	22677078	3R_22677078_SNP [dm3] 3R_26851356_SNP [dm6]	T	C	2.588e^-4	0.699	INTRON Lerp	TF binding site mE1_TFBS_inv
2R	17156446	2R_17156446_SNP [dm3] 2R_21268941_SNP [dm6]	G	A	2.589e^-4	0.699	INTRON Rgk3
2R	15180405	2R_15180405_SNP [dm3] 2R_19292900_SNP [dm6]	C	T	2.592e^-4	0.699	UPSTREAM mip40 INTRON Tab2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	17603841	3L_17603841_SNP [dm3] 3L_17610741_SNP [dm6]	G	A	2.595e^-4	0.699	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	5656804	3L_5656804_SNP [dm3] 3L_5663704_SNP [dm6]	T	A	2.605e^-4	0.699	INTRON sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5850243	X_5850243_SNP [dm3] X_5956210_SNP [dm6]	T	G	2.609e^-4	0.699	INTRON CG6067
X	5850244	X_5850244_SNP [dm3] X_5956211_SNP [dm6]	T	G	2.609e^-4	0.699	INTRON CG6067
3L	11864435	3L_11864435_SNP [dm3] 3L_11871335_SNP [dm6]	C	T	2.610e^-4	0.699	UPSTREAM CG5906 INTRON CG44837
3L	2101193	3L_2101193_SNP [dm3] 3L_2101193_SNP [dm6]	A	G	2.611e^-4	0.699	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	20743241	3L_20743241_SNP [dm3] 3L_20750141_SNP [dm6]	A	C	2.620e^-4	0.699	INTERGENIC
3L	6254972	3L_6254972_SNP [dm3] 3L_6261872_SNP [dm6]	G	A	2.621e^-4	0.699	UPSTREAM ImpL3 INTRON ImpL3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3837379	3L_3837379_SNP [dm3] 3L_3837379_SNP [dm6]	C	T	2.622e^-4	0.699	SYNONYMOUS_CODING enc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6481657	X_6481657_SNP [dm3] X_6587624_SNP [dm6]	T	C	2.622e^-4	0.699	INTRON CG34417
2R	15430623	2R_15430623_SNP [dm3] 2R_19543118_SNP [dm6]	T	G	2.627e^-4	0.699	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2L	4935284	2L_4935284_SNP [dm3] 2L_4935284_SNP [dm6]	C	T	2.628e^-4	0.699	SYNONYMOUS_CODING hoe2	TF binding site mE1_TFBS_chinmo
3R	9707096	3R_9707096_SNP [dm3] 3R_13881374_SNP [dm6]	G	T	2.628e^-4	0.699	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	13682404	3R_13682404_SNP [dm3] 3R_17856682_SNP [dm6]	C	T	2.634e^-4	0.699	INTRON tinc
2R	16650066	2R_16650066_SNP [dm3] 2R_20762561_SNP [dm6]	T	G	2.638e^-4	0.699	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16609443	X_16609443_SNP [dm3] X_16715410_SNP [dm6]	C	A	2.640e^-4	0.699	INTRON CG34325
3L	10435786	3L_10435786_SNP [dm3] 3L_10442686_SNP [dm6]	C	T	2.645e^-4	0.699	INTERGENIC
3L	6472014	3L_6472014_SNP [dm3] 3L_6478914_SNP [dm6]	G	A	2.646e^-4	0.699	INTRON CG42747
2R	13646777	2R_13646777_SNP [dm3] 2R_17759272_SNP [dm6]	T	C	2.659e^-4	0.699	INTRON HLH54F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18577019	3L_18577019_SNP [dm3] 3L_18583919_SNP [dm6]	A	T	2.659e^-4	0.699	EXON CR45435
3R	18401920	3R_18401920_SNP [dm3] 3R_22576198_SNP [dm6]	T	G	2.661e^-4	0.699	INTRON CG33110
2R	16426797	2R_16426797_SNP [dm3] 2R_20539292_SNP [dm6]	T	C	2.663e^-4	0.699	UTR_5_PRIME CG13427 DOWNSTREAM CG13428	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6092236	3L_6092236_SNP [dm3] 3L_6099136_SNP [dm6]	T	C	2.679e^-4	0.699	INTRON Ets65A
X	8246042	X_8246042_DEL [dm3] X_8352009_DEL [dm6]	ACA	A	2.682e^-4	0.699	INTRON nAChRalpha3
2L	3286171	2L_3286171_SNP [dm3] 2L_3286171_SNP [dm6]	A	T	2.685e^-4	0.699	INTERGENIC
3L	4414167	3L_4414167_SNP [dm3] 3L_4414167_SNP [dm6]	G	A	2.688e^-4	0.699	UPSTREAM DOR INTRON DOR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	19926273	3R_19926273_SNP [dm3] 3R_24100551_SNP [dm6]	C	A	2.694e^-4	0.699	INTRON 4EHP
3R	21490002	3R_21490002_SNP [dm3] 3R_25664280_SNP [dm6]	T	A	2.697e^-4	0.699	INTRON RASSF8
3R	10621694	3R_10621694_SNP [dm3] 3R_14795972_SNP [dm6]	T	A	2.697e^-4	0.699	UPSTREAM CG14855 DOWNSTREAM jvl INTERGENIC
3L	2645997	3L_2645997_SNP [dm3] 3L_2645997_SNP [dm6]	G	T	2.699e^-4	0.699	NON_SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14282282	2R_14282282_SNP [dm3] 2R_18394777_SNP [dm6]	C	T	2.701e^-4	0.699	SYNONYMOUS_CODING Idgf5
3L	3805064	3L_3805064_SNP [dm3] 3L_3805064_SNP [dm6]	T	G	2.706e^-4	0.699	INTRON CG32264 & 1 other
X	19293197	X_19293197_SNP [dm3] X_19399164_SNP [dm6]	G	A	2.708e^-4	0.699	INTRON kek5
3R	25599610	3R_25599610_DEL [dm3] 3R_29773888_DEL [dm6]	ACTTTACAACTGTTA...	G	2.712e^-4	0.699	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18780293	3R_18780293_SNP [dm3] 3R_22954571_SNP [dm6]	G	C	2.728e^-4	0.699	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	10998553	2R_10998553_SNP [dm3] 2R_15111048_SNP [dm6]	C	T	2.741e^-4	0.699	INTERGENIC
3L	5782028	3L_5782028_SNP [dm3] 3L_5788928_SNP [dm6]	T	A	2.742e^-4	0.699	DOWNSTREAM Bre1 INTERGENIC
2R	20889947	2R_20889947_SNP [dm3] 2R_25002424_SNP [dm6]	A	G	2.743e^-4	0.699	SYNONYMOUS_CODING zip
3L	6092278	3L_6092278_SNP [dm3] 3L_6099178_SNP [dm6]	T	G	2.744e^-4	0.699	INTRON Ets65A
3L	6092172	3L_6092172_SNP [dm3] 3L_6099072_SNP [dm6]	A	C	2.746e^-4	0.699	INTRON Ets65A
3L	17283688	3L_17283688_SNP [dm3] 3L_17290588_SNP [dm6]	A	G	2.747e^-4	0.699	INTERGENIC
2R	6827457	2R_6827457_SNP [dm3] 2R_10939952_SNP [dm6]	A	C	2.747e^-4	0.699	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
2R	20348140	2R_20348140_SNP [dm3] 2R_24460617_SNP [dm6]	G	A	2.750e^-4	0.699	INTRON CG13579
3R	15894745	3R_15894745_SNP [dm3] 3R_20069023_SNP [dm6]	G	A	2.750e^-4	0.699	INTERGENIC
3L	4338658	3L_4338658_SNP [dm3] 3L_4338658_SNP [dm6]	C	A	2.753e^-4	0.699	INTRON Cip4	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	20272005	X_20272005_SNP [dm3] X_20400978_SNP [dm6]	A	T	2.760e^-4	0.699	SYNONYMOUS_CODING HERC2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25214144	3R_25214144_SNP [dm3] 3R_29388422_SNP [dm6]	T	C	2.761e^-4	0.699	INTRON Ptp99A
3R	25208470	3R_25208470_SNP [dm3] 3R_29382748_SNP [dm6]	C	G	2.768e^-4	0.699	INTRON Ptp99A
3R	4596938	3R_4596938_SNP [dm3] 3R_8771216_SNP [dm6]	A	T	2.768e^-4	0.699	DOWNSTREAM CG13318 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	8132744	2R_8132744_SNP [dm3] 2R_12245239_SNP [dm6]	T	G	2.775e^-4	0.699	UPSTREAM CG43244 INTERGENIC
2L	3013753	2L_3013753_SNP [dm3] 2L_3013753_SNP [dm6]	G	A	2.777e^-4	0.699	SYNONYMOUS_CODING CG17265	TF binding site mE1_TFBS_inv
3L	4843341	3L_4843341_SNP [dm3] 3L_4843341_SNP [dm6]	A	C	2.780e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	5850241	X_5850241_INS [dm3] X_5956208_INS [dm6]	G	GT	2.781e^-4	0.699	INTRON CG6067
2R	6847413	2R_6847413_SNP [dm3] 2R_10959908_SNP [dm6]	C	T	2.784e^-4	0.699	INTERGENIC
2L	16239759	2L_16239759_SNP [dm3] 2L_16239759_SNP [dm6]	T	C	2.784e^-4	0.699	INTRON CG42817
2L	20991750	2L_20991750_SNP [dm3] 2L_20991750_SNP [dm6]	A	C	2.794e^-4	0.699	INTRON CG42238
2R	12458046	2R_12458046_SNP [dm3] 2R_16570541_SNP [dm6]	A	T	2.795e^-4	0.699	DOWNSTREAM CG4945 INTRON RpS15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26074104	3R_26074104_SNP [dm3] 3R_30248382_SNP [dm6]	T	A	2.797e^-4	0.699	UPSTREAM tRNA:CR31383 DOWNSTREAM tRNA:CR31023 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	20211874	2R_20211874_SNP [dm3] 2R_24324351_SNP [dm6]	A	C	2.799e^-4	0.699	UPSTREAM CR44810 INTERGENIC
2R	8132682	2R_8132682_SNP [dm3] 2R_12245177_SNP [dm6]	C	T	2.819e^-4	0.699	UPSTREAM CG43244 INTERGENIC
2R	10998554	2R_10998554_INS [dm3] 2R_15111049_INS [dm6]	A	ACCATAAGAACCACTAATGG...	2.822e^-4	0.699	INTERGENIC
3L	6092142	3L_6092142_SNP [dm3] 3L_6099042_SNP [dm6]	A	G	2.824e^-4	0.699	INTRON Ets65A
2L	17755071	2L_17755071_SNP [dm3] 2L_17755071_SNP [dm6]	A	G	2.829e^-4	0.699	INTRON CadN	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	18346616	3L_18346616_SNP [dm3] 3L_18353516_SNP [dm6]	G	C	2.839e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	17861165	3R_17861165_SNP [dm3] 3R_22035443_SNP [dm6]	C	A	2.841e^-4	0.699	UTR_3_PRIME Fadd UPSTREAM pit & 1 other INTRON pit	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
X	4091094	X_4091094_DEL [dm3] X_4197061_DEL [dm6]	AAA	A	2.844e^-4	0.699	INTRON Fas2
X	14139459	X_14139459_SNP [dm3] X_14245426_SNP [dm6]	A	T	2.846e^-4	0.699	INTRON CG32599
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	2.849e^-4	0.699	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6903733	X_6903733_SNP [dm3] X_7009700_SNP [dm6]	A	C	2.860e^-4	0.699	INTRON cm & 1 other
2R	6797789	2R_6797789_SNP [dm3] 2R_10910284_SNP [dm6]	C	A	2.861e^-4	0.699	NON_SYNONYMOUS_CODING Obp47a
3R	13821335	3R_13821335_SNP [dm3] 3R_17995613_SNP [dm6]	G	A	2.863e^-4	0.699	INTRON cpo
3L	2645586	3L_2645586_SNP [dm3] 3L_2645586_SNP [dm6]	T	G	2.870e^-4	0.699	INTRON CG1143	TF binding site mE1_TFBS_cad
3L	3798634	3L_3798634_SNP [dm3] 3L_3798634_SNP [dm6]	T	C	2.876e^-4	0.699	INTRON CG32264
2R	6797806	2R_6797806_SNP [dm3] 2R_10910301_SNP [dm6]	T	C	2.877e^-4	0.699	NON_SYNONYMOUS_CODING Obp47a
2R	8133237	2R_8133237_SNP [dm3] 2R_12245732_SNP [dm6]	C	T	2.884e^-4	0.699	DOWNSTREAM CR44315 INTERGENIC
3L	10877280	3L_10877280_SNP [dm3] 3L_10884180_SNP [dm6]	C	G	2.888e^-4	0.699	DOWNSTREAM CG6404 & 1 other INTERGENIC
3R	4596929	3R_4596929_SNP [dm3] 3R_8771207_SNP [dm6]	T	C	2.891e^-4	0.699	DOWNSTREAM CG13318 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	13809956	2R_13809956_SNP [dm3] 2R_17922451_SNP [dm6]	C	G	2.897e^-4	0.699	INTRON Elk
2L	2392715	2L_2392715_SNP [dm3] 2L_2392715_SNP [dm6]	G	T	2.897e^-4	0.699	INTRON VGlut
3R	9817331	3R_9817331_SNP [dm3] 3R_13991609_SNP [dm6]	T	G	2.903e^-4	0.699	INTRON rdx
3L	1722831	3L_1722831_SNP [dm3] 3L_1722831_SNP [dm6]	C	T	2.903e^-4	0.699	SYNONYMOUS_CODING CG18171 INTRON drpr
2R	12550632	2R_12550632_SNP [dm3] 2R_16663127_SNP [dm6]	C	T	2.906e^-4	0.699	INTRON Picot
2L	21921535	2L_21921535_SNP [dm3] 2L_21921535_SNP [dm6]	T	C	2.913e^-4	0.699	INTERGENIC
3L	2647819	3L_2647819_SNP [dm3] 3L_2647819_SNP [dm6]	T	G	2.915e^-4	0.699	UPSTREAM CG1246 DOWNSTREAM CG1143 INTERGENIC
X	11236463	X_11236463_SNP [dm3] X_11342430_SNP [dm6]	C	G	2.924e^-4	0.699	INTRON CG34348
3R	10592168	3R_10592168_SNP [dm3] 3R_14766446_SNP [dm6]	G	A	2.930e^-4	0.699	INTRON jvl
X	12754875	X_12754875_SNP [dm3] X_12860842_SNP [dm6]	C	A	2.934e^-4	0.699	INTRON Pde9
3R	22201417	3R_22201417_SNP [dm3] 3R_26375695_SNP [dm6]	T	G	2.935e^-4	0.699	INTERGENIC
3L	11864433	3L_11864433_SNP [dm3] 3L_11871333_SNP [dm6]	G	A	2.941e^-4	0.699	UPSTREAM CG5906 INTRON CG44837
3R	15294845	3R_15294845_SNP [dm3] 3R_19469123_SNP [dm6]	G	A	2.946e^-4	0.699	INTRON Dys	TF binding site mE1_TFBS_inv
3R	26074197	3R_26074197_SNP [dm3] 3R_30248475_SNP [dm6]	C	T	2.950e^-4	0.699	UPSTREAM tRNA:CR31383 DOWNSTREAM tRNA:CR31023 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11330070	2R_11330070_SNP [dm3] 2R_15442565_SNP [dm6]	G	A	2.958e^-4	0.699	INTRON CG43729
2R	20595942	2R_20595942_SNP [dm3] 2R_24708419_SNP [dm6]	G	A	2.965e^-4	0.699	INTRON Mid1	TF binding site mE1_TFBS_chinmo
3L	14489439	3L_14489439_SNP [dm3] 3L_14496339_SNP [dm6]	A	G	2.974e^-4	0.699	INTRON bbg	TF binding site mE1_TFBS_cad
3R	10623927	3R_10623927_SNP [dm3] 3R_14798205_SNP [dm6]	T	C	2.976e^-4	0.699	SYNONYMOUS_CODING CG14855 UPSTREAM CG14856
X	7061945	X_7061945_SNP [dm3] X_7167912_SNP [dm6]	T	C	2.981e^-4	0.699	INTRON CG9650 & 1 other EXON CR44357
3R	22486109	3R_22486109_SNP [dm3] 3R_26660387_SNP [dm6]	A	G	2.983e^-4	0.699	INTRON beat-VII
2R	20279371	2R_20279371_SNP [dm3] 2R_24391848_SNP [dm6]	C	T	2.983e^-4	0.699	DOWNSTREAM slik EXON CR44813
3R	15894153	3R_15894153_INS [dm3] 3R_20068431_INS [dm6]	T	TAGTT	2.989e^-4	0.699	INTERGENIC
2R	16303177	2R_16303177_SNP [dm3] 2R_20415672_SNP [dm6]	C	T	2.994e^-4	0.699	INTERGENIC
2R	9495195	2R_9495195_SNP [dm3] 2R_13607690_SNP [dm6]	A	G	3.000e^-4	0.699	DOWNSTREAM CG12464 INTERGENIC
2R	20348355	2R_20348355_SNP [dm3] 2R_24460832_SNP [dm6]	G	A	3.000e^-4	0.699	INTRON CG13579
2R	6563180	2R_6563180_SNP [dm3] 2R_10675675_SNP [dm6]	A	G	3.001e^-4	0.699	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	6822162	2R_6822162_SNP [dm3] 2R_10934657_SNP [dm6]	A	T	3.003e^-4	0.699	INTERGENIC
3L	6254145	3L_6254145_SNP [dm3] 3L_6261045_SNP [dm6]	C	A	3.004e^-4	0.699	UPSTREAM ImpL3 INTRON ImpL3
3R	11417102	3R_11417102_SNP [dm3] 3R_15591380_SNP [dm6]	A	T	3.009e^-4	0.699	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6822245	2R_6822245_SNP [dm3] 2R_10934740_SNP [dm6]	T	C	3.009e^-4	0.699	INTERGENIC
3L	15608512	3L_15608512_SNP [dm3] 3L_15615412_SNP [dm6]	C	T	3.015e^-4	0.699	INTRON comm3
X	13095626	X_13095626_SNP [dm3] X_13201593_SNP [dm6]	A	C	3.019e^-4	0.699	NON_SYNONYMOUS_CODING CG44437 INTRON sno	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	12541667	2R_12541667_SNP [dm3] 2R_16654162_SNP [dm6]	A	G	3.029e^-4	0.699	SYNONYMOUS_CODING Nach
3R	18579353	3R_18579353_SNP [dm3] 3R_22753631_SNP [dm6]	C	G	3.030e^-4	0.699	UPSTREAM CG7029 INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10998606	2R_10998606_SNP [dm3] 2R_15111101_SNP [dm6]	A	C	3.031e^-4	0.699	INTERGENIC
2R	9260368	2R_9260368_SNP [dm3] 2R_13372863_SNP [dm6]	G	A	3.032e^-4	0.699	INTERGENIC
3L	16015470	3L_16015470_SNP [dm3] 3L_16022370_SNP [dm6]	C	G	3.045e^-4	0.699	UPSTREAM CR43949 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
3L	16215315	3L_16215315_SNP [dm3] 3L_16222215_SNP [dm6]	T	A	3.046e^-4	0.699	DOWNSTREAM tRNA:CR32153 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	4950263	3L_4950263_SNP [dm3] 3L_4950263_SNP [dm6]	C	T	3.053e^-4	0.699	INTRON Con	TF binding site mE1_TFBS_chinmo
2R	9495417	2R_9495417_SNP [dm3] 2R_13607912_SNP [dm6]	A	C	3.054e^-4	0.699	DOWNSTREAM CG12464 INTERGENIC
3R	1928235	3R_1928235_SNP [dm3] 3R_6102513_SNP [dm6]	T	C	3.055e^-4	0.699	INTRON CR44929
2L	9687743	2L_9687743_SNP [dm3] 2L_9687743_SNP [dm6]	C	T	3.059e^-4	0.699	INTRON Pka-C1
2L	12325195	2L_12325195_INS [dm3] 2L_12325195_INS [dm6]	A	ACGTAAAGCAAAATATTTTC...	3.065e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4596912	3R_4596912_MNP [dm3] 3R_8771190_MNP [dm6]	CGTTTTAAA	GAAGGACTT	3.067e^-4	0.699	DOWNSTREAM CG13318 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	4459003	3L_4459003_SNP [dm3] 3L_4459003_SNP [dm6]	T	C	3.081e^-4	0.699	UPSTREAM CG11345 DOWNSTREAM CG15022 INTERGENIC
2R	8136809	2R_8136809_SNP [dm3] 2R_12249304_SNP [dm6]	G	T	3.090e^-4	0.699	INTERGENIC
3R	25638736	3R_25638736_SNP [dm3] 3R_29813014_SNP [dm6]	G	A	3.092e^-4	0.699	INTRON ca	TF binding site mE1_TFBS_chinmo
3L	2647839	3L_2647839_SNP [dm3] 3L_2647839_SNP [dm6]	C	G	3.094e^-4	0.699	UPSTREAM CG1246 DOWNSTREAM CG1143 INTERGENIC
2L	13413422	2L_13413422_SNP [dm3] 2L_13413422_SNP [dm6]	A	C	3.101e^-4	0.699	UTR_3_PRIME CG16848 DOWNSTREAM CG16956	TF binding site mE1_TFBS_cad
3L	18583668	3L_18583668_SNP [dm3] 3L_18590568_SNP [dm6]	T	A	3.103e^-4	0.699	DOWNSTREAM CG7271 INTERGENIC
X	12144915	X_12144915_SNP [dm3] X_12250882_SNP [dm6]	A	T	3.107e^-4	0.699	INTRON Ten-a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	2304517	2L_2304517_SNP [dm3] 2L_2304517_SNP [dm6]	C	T	3.116e^-4	0.699	INTERGENIC
X	12940570	X_12940570_SNP [dm3] X_13046537_SNP [dm6]	C	A	3.117e^-4	0.699	INTRON rad
3L	15714732	3L_15714732_SNP [dm3] 3L_15721632_SNP [dm6]	T	G	3.121e^-4	0.699	UTR_3_PRIME comm DOWNSTREAM comm	TF binding site mE1_TFBS_cad
X	11756868	X_11756868_SNP [dm3] X_11862835_SNP [dm6]	G	T	3.121e^-4	0.699	SYNONYMOUS_CODING ATP7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19484195	3L_19484195_SNP [dm3] 3L_19491095_SNP [dm6]	T	G	3.124e^-4	0.699	DOWNSTREAM CG9449 INTERGENIC
3L	2170150	3L_2170150_SNP [dm3] 3L_2170150_SNP [dm6]	C	T	3.130e^-4	0.699	SYNONYMOUS_CODING CG5704	TF binding site mE1_TFBS_HSA
3R	26394885	3R_26394885_SNP [dm3] 3R_30569163_SNP [dm6]	T	G	3.131e^-4	0.699	INTRON tmod	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7777439	3L_7777439_SNP [dm3] 3L_7784339_SNP [dm6]	C	T	3.132e^-4	0.699	INTRON CG32369
3R	22486102	3R_22486102_SNP [dm3] 3R_26660380_SNP [dm6]	A	T	3.133e^-4	0.699	INTRON beat-VII
2R	6823711	2R_6823711_SNP [dm3] 2R_10936206_SNP [dm6]	C	A	3.136e^-4	0.699	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	4737859	3L_4737859_SNP [dm3] 3L_4737859_SNP [dm6]	A	G	3.139e^-4	0.699	INTRON RhoGEF64C
3L	5243604	3L_5243604_SNP [dm3] 3L_5250504_SNP [dm6]	T	C	3.144e^-4	0.699	INTRON shep
3L	13727086	3L_13727086_DEL [dm3] 3L_13733986_DEL [dm6]	CAGTCCGTGAACCCAGAGTC...	C	3.148e^-4	0.699	INTRON bru-3
2R	6827374	2R_6827374_INS [dm3] 2R_10939869_INS [dm6]	A	AT	3.149e^-4	0.699	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
2R	12536642	2R_12536642_SNP [dm3] 2R_16649137_SNP [dm6]	C	T	3.155e^-4	0.699	UTR_3_PRIME gprs DOWNSTREAM gprs INTRON gprs
3L	3837382	3L_3837382_SNP [dm3] 3L_3837382_SNP [dm6]	T	C	3.162e^-4	0.699	SYNONYMOUS_CODING enc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6109933	2R_6109933_INS [dm3] 2R_10222428_INS [dm6]	T	TG	3.163e^-4	0.699	INTRON Hr46 & 1 other
3L	19484185	3L_19484185_SNP [dm3] 3L_19491085_SNP [dm6]	T	G	3.173e^-4	0.699	DOWNSTREAM CG9449 INTERGENIC
2L	4427675	2L_4427675_SNP [dm3] 2L_4427675_SNP [dm6]	A	T	3.179e^-4	0.699	INTRON CG15431
2R	6827523	2R_6827523_SNP [dm3] 2R_10940018_SNP [dm6]	T	C	3.180e^-4	0.699	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
3R	24044367	3R_24044367_SNP [dm3] 3R_28218645_SNP [dm6]	G	A	3.180e^-4	0.699	INTRON CG34354
3R	15943996	3R_15943996_SNP [dm3] 3R_20118274_SNP [dm6]	T	C	3.193e^-4	0.699	INTERGENIC
2L	20025994	2L_20025994_SNP [dm3] 2L_20025994_SNP [dm6]	T	C	3.194e^-4	0.699	UPSTREAM CG10659 INTERGENIC	transposable element FlyBase
X	16341636	X_16341636_DEL [dm3] X_16447603_DEL [dm6]	TGACAGCGCGCGAGTACAA...	T	3.195e^-4	0.699	UTR_3_PRIME CG34015 UPSTREAM eIF-2alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9699895	X_9699895_SNP [dm3] X_9805862_SNP [dm6]	C	G	3.199e^-4	0.699	INTRON CG32698
3R	10272634	3R_10272634_SNP [dm3] 3R_14446912_SNP [dm6]	T	C	3.203e^-4	0.699	INTRON cv-c
2R	8136797	2R_8136797_SNP [dm3] 2R_12249292_SNP [dm6]	G	A	3.209e^-4	0.699	INTERGENIC
3L	6838323	3L_6838323_SNP [dm3] 3L_6845223_SNP [dm6]	G	T	3.232e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20752835	3L_20752835_SNP [dm3] 3L_20759735_SNP [dm6]	A	G	3.238e^-4	0.699	DOWNSTREAM CG43251 INTERGENIC
3L	3804855	3L_3804855_SNP [dm3] 3L_3804855_SNP [dm6]	G	A	3.243e^-4	0.699	INTRON CG32264 & 1 other	TF binding site mE1_TFBS_cad
2L	13610291	2L_13610291_SNP [dm3] 2L_13610291_SNP [dm6]	C	T	3.254e^-4	0.699	NON_SYNONYMOUS_CODING kuz DOWNSTREAM mir-2489
X	1500956	X_1500956_SNP [dm3] X_1606923_SNP [dm6]	C	T	3.254e^-4	0.699	INTRON br & 1 other
3L	11872021	3L_11872021_SNP [dm3] 3L_11878921_SNP [dm6]	G	T	3.258e^-4	0.699	UPSTREAM CG14128 INTRON CG44837
3R	10272628	3R_10272628_SNP [dm3] 3R_14446906_SNP [dm6]	C	T	3.259e^-4	0.699	INTRON cv-c
X	1511113	X_1511113_SNP [dm3] X_1617080_SNP [dm6]	C	T	3.267e^-4	0.699	INTRON br & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	6827530	2R_6827530_SNP [dm3] 2R_10940025_SNP [dm6]	C	T	3.285e^-4	0.699	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
2R	9495474	2R_9495474_SNP [dm3] 2R_13607969_SNP [dm6]	C	T	3.286e^-4	0.699	DOWNSTREAM CG12464 INTERGENIC
2R	17120729	2R_17120729_SNP [dm3] 2R_21233224_SNP [dm6]	A	G	3.286e^-4	0.699	INTRON ASPP
2R	6827461	2R_6827461_SNP [dm3] 2R_10939956_SNP [dm6]	T	C	3.286e^-4	0.699	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
2R	21079264	2R_21079264_SNP [dm3] 2R_25191741_SNP [dm6]	A	T	3.287e^-4	0.699	INTRON CG9380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20346350	2R_20346350_SNP [dm3] 2R_24458827_SNP [dm6]	C	T	3.288e^-4	0.699	INTRON CG13579	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6798037	2R_6798037_SNP [dm3] 2R_10910532_SNP [dm6]	T	C	3.288e^-4	0.699	DOWNSTREAM Obp47a INTERGENIC
X	18389713	X_18389713_SNP [dm3] X_18495680_SNP [dm6]	T	A	3.288e^-4	0.699	UTR_3_PRIME GalNAc-T2 DOWNSTREAM CR45627 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	20259404	X_20259404_SNP [dm3] X_20388377_SNP [dm6]	T	C	3.301e^-4	0.699	INTERGENIC
3R	20172780	3R_20172780_SNP [dm3] 3R_24347058_SNP [dm6]	G	A	3.303e^-4	0.699	INTRON CG5746	TF binding site mE1_TFBS_cad
2L	9618143	2L_9618143_SNP [dm3] 2L_9618143_SNP [dm6]	T	C	3.305e^-4	0.699	INTRON GlcAT-S
3L	13907667	3L_13907667_INS [dm3] 3L_13914567_INS [dm6]	T	TT	3.312e^-4	0.699	INTRON Rgl
3R	18627556	3R_18627556_SNP [dm3] 3R_22801834_SNP [dm6]	A	G	3.330e^-4	0.699	INTERGENIC
2L	1103848	2L_1103848_SNP [dm3] 2L_1103848_SNP [dm6]	G	A	3.336e^-4	0.699	INTRON mtRNApol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5566949	3L_5566949_SNP [dm3] 3L_5573849_SNP [dm6]	C	A	3.341e^-4	0.699	INTRON Msr-110
3R	26199812	3R_26199812_SNP [dm3] 3R_30374090_SNP [dm6]	C	G	3.344e^-4	0.699	INTERGENIC
2R	13687788	2R_13687788_SNP [dm3] 2R_17800283_SNP [dm6]	C	T	3.345e^-4	0.699	UTR_3_PRIME Dhit UPSTREAM grh DOWNSTREAM CR45270	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19796111	2L_19796111_SNP [dm3] 2L_19796111_SNP [dm6]	G	T	3.362e^-4	0.699	UPSTREAM sick & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3R	5360821	3R_5360821_SNP [dm3] 3R_9535099_SNP [dm6]	G	A	3.373e^-4	0.699	DOWNSTREAM mura INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	19143020	2L_19143020_SNP [dm3] 2L_19143020_SNP [dm6]	G	T	3.373e^-4	0.699	INTRON brat	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12848206	3L_12848206_DEL [dm3] 3L_12855106_DEL [dm6]	ACTTTCGC	A	3.377e^-4	0.699	INTRON Ent3
2R	15433623	2R_15433623_SNP [dm3] 2R_19546118_SNP [dm6]	C	T	3.379e^-4	0.699	INTRON sm	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
3L	2651932	3L_2651932_SNP [dm3] 3L_2651932_SNP [dm6]	A	T	3.380e^-4	0.699	UPSTREAM Snup & 2 others INTERGENIC
2L	19606078	2L_19606078_SNP [dm3] 2L_19606078_SNP [dm6]	A	T	3.382e^-4	0.699	UPSTREAM CR44978 & 1 other INTRON Lar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
X	13918206	X_13918206_SNP [dm3] X_14024173_SNP [dm6]	G	T	3.383e^-4	0.699	DOWNSTREAM tRNA:S774:12Ec INTERGENIC
2R	14158222	2R_14158222_SNP [dm3] 2R_18270717_SNP [dm6]	T	C	3.385e^-4	0.699	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	14874054	3R_14874054_SNP [dm3] 3R_19048332_SNP [dm6]	G	T	3.387e^-4	0.699	SYNONYMOUS_CODING cdi
3L	5478981	3L_5478981_SNP [dm3] 3L_5485881_SNP [dm6]	G	T	3.394e^-4	0.699	INTERGENIC
3L	9782925	3L_9782925_SNP [dm3] 3L_9789825_SNP [dm6]	T	G	3.396e^-4	0.699	INTRON Zasp67
X	9844105	X_9844105_SNP [dm3] X_9950072_SNP [dm6]	G	C	3.400e^-4	0.699	INTERGENIC
2R	6717287	2R_6717287_SNP [dm3] 2R_10829782_SNP [dm6]	T	C	3.406e^-4	0.699	INTRON CG12344
3R	15894228	3R_15894228_SNP [dm3] 3R_20068506_SNP [dm6]	A	T	3.407e^-4	0.699	INTERGENIC
3R	15894233	3R_15894233_DEL [dm3] 3R_20068511_DEL [dm6]	GCAT	G	3.407e^-4	0.699	INTERGENIC
3R	22420618	3R_22420618_SNP [dm3] 3R_26594896_SNP [dm6]	C	T	3.412e^-4	0.699	UTR_3_PRIME scrib INTRON scrib
3R	19656518	3R_19656518_SNP [dm3] 3R_23830796_SNP [dm6]	C	A	3.416e^-4	0.699	INTRON CG34355
3L	3951088	3L_3951088_SNP [dm3] 3L_3951088_SNP [dm6]	C	G	3.418e^-4	0.699	DOWNSTREAM CG14984 INTERGENIC
X	5075570	X_5075570_SNP [dm3] X_5181537_SNP [dm6]	G	A	3.426e^-4	0.699	INTRON rg & 2 others
2R	5690915	2R_5690915_INS [dm3] 2R_9803410_INS [dm6]	G	GCG	3.429e^-4	0.699	INTRON CG1688
3L	5651643	3L_5651643_SNP [dm3] 3L_5658543_SNP [dm6]	C	A	3.433e^-4	0.699	UTR_5_PRIME sif INTRON sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6477557	X_6477557_SNP [dm3] X_6583524_SNP [dm6]	A	T	3.435e^-4	0.699	UTR_3_PRIME CG34417 INTRON CG34417
3L	14985464	3L_14985464_SNP [dm3] 3L_14992364_SNP [dm6]	C	T	3.448e^-4	0.699	UTR_5_PRIME Zip71B DOWNSTREAM mnd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	14009337	3L_14009337_SNP [dm3] 3L_14016237_SNP [dm6]	C	A	3.455e^-4	0.699	SYNONYMOUS_CODING upSET	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	3354923	3L_3354923_SNP [dm3] 3L_3354923_SNP [dm6]	T	A	3.460e^-4	0.699	INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	11892872	3L_11892872_SNP [dm3] 3L_11899772_SNP [dm6]	C	T	3.466e^-4	0.699	INTRON CG44837 & 1 other
2R	9495313	2R_9495313_SNP [dm3] 2R_13607808_SNP [dm6]	G	A	3.469e^-4	0.699	DOWNSTREAM CG12464 INTERGENIC
2L	15132192	2L_15132192_SNP [dm3] 2L_15132192_SNP [dm6]	T	A	3.469e^-4	0.699	DOWNSTREAM tRNA:L:35C INTERGENIC
3L	13479818	3L_13479818_SNP [dm3] 3L_13486718_SNP [dm6]	C	T	3.470e^-4	0.699	UPSTREAM Tgi & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4406336	3L_4406336_SNP [dm3] 3L_4406336_SNP [dm6]	G	A	3.471e^-4	0.699	UPSTREAM DOR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
3L	3658113	3L_3658113_SNP [dm3] 3L_3658113_SNP [dm6]	A	G	3.473e^-4	0.699	UPSTREAM CG43098 INTERGENIC
3R	19339116	3R_19339116_DEL [dm3] 3R_23513394_DEL [dm6]	TT	T	3.479e^-4	0.699	DOWNSTREAM Irk2 INTERGENIC
3R	23199029	3R_23199029_SNP [dm3] 3R_27373307_SNP [dm6]	C	A	3.483e^-4	0.699	DOWNSTREAM CG42534 INTERGENIC
3L	11865731	3L_11865731_MNP [dm3] 3L_11872631_MNP [dm6]	GTT	AAA	3.486e^-4	0.699	INTRON CG44837
2L	8447795	2L_8447795_SNP [dm3] 2L_8447795_SNP [dm6]	C	T	3.486e^-4	0.699	SYNONYMOUS_CODING U26 UTR_3_PRIME U26
3L	2674970	3L_2674970_SNP [dm3] 3L_2674970_SNP [dm6]	G	A	3.491e^-4	0.699	INTRON Fife
3L	1706645	3L_1706645_SNP [dm3] 3L_1706645_SNP [dm6]	G	A	3.494e^-4	0.699	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10998641	2R_10998641_SNP [dm3] 2R_15111136_SNP [dm6]	A	C	3.512e^-4	0.699	INTERGENIC
3R	25921729	3R_25921729_SNP [dm3] 3R_30096007_SNP [dm6]	C	G	3.513e^-4	0.699	INTRON sima
X	999185	X_999185_SNP [dm3] X_1105152_SNP [dm6]	A	G	3.513e^-4	0.699	INTRON CG3655
2R	11804667	2R_11804667_SNP [dm3] 2R_15917162_SNP [dm6]	T	G	3.515e^-4	0.699	DOWNSTREAM CR44373 INTRON sli	TF binding site mE1_TFBS_cad
2R	10591647	2R_10591647_DEL [dm3] 2R_14704142_DEL [dm6]	TT	C	3.521e^-4	0.699	INTRON mspo
2L	19796114	2L_19796114_INS [dm3] 2L_19796114_INS [dm6]	A	AAACTATGATTTAGATTA...	3.522e^-4	0.699	UPSTREAM sick & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	12538052	2R_12538052_SNP [dm3] 2R_16650547_SNP [dm6]	T	G	3.533e^-4	0.699	UTR_3_PRIME gprs DOWNSTREAM Amyrel INTRON gprs
3R	10329382	3R_10329382_SNP [dm3] 3R_14503660_SNP [dm6]	A	T	3.547e^-4	0.699	INTRON CR44177
X	18254109	X_18254109_SNP [dm3] X_18360076_SNP [dm6]	G	T	3.547e^-4	0.699	NON_SYNONYMOUS_CODING CG6106	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2926734	X_2926734_SNP [dm3] X_3032701_SNP [dm6]	C	A	3.549e^-4	0.699	INTRON kirre
3L	1963052	3L_1963052_SNP [dm3] 3L_1963052_SNP [dm6]	G	A	3.551e^-4	0.699	UTR_5_PRIME mv UPSTREAM SCOT	TF binding site mE1_TFBS_Trl
3L	20757290	3L_20757290_SNP [dm3] 3L_20764190_SNP [dm6]	T	G	3.551e^-4	0.699	INTERGENIC
2R	8990870	2R_8990870_SNP [dm3] 2R_13103365_SNP [dm6]	G	C	3.553e^-4	0.699	UPSTREAM CG44341 INTERGENIC
3R	10804408	3R_10804408_SNP [dm3] 3R_14978686_SNP [dm6]	C	T	3.555e^-4	0.699	INTERGENIC
3R	20833348	3R_20833348_SNP [dm3] 3R_25007626_SNP [dm6]	G	A	3.574e^-4	0.699	INTRON tnc
3R	10808270	3R_10808270_SNP [dm3] 3R_14982548_SNP [dm6]	G	A	3.584e^-4	0.699	INTERGENIC
2R	20351335	2R_20351335_SNP [dm3] 2R_24463812_SNP [dm6]	A	G	3.588e^-4	0.699	INTRON CG13579
2R	16303230	2R_16303230_SNP [dm3] 2R_20415725_SNP [dm6]	C	A	3.589e^-4	0.699	INTERGENIC
3L	6254404	3L_6254404_SNP [dm3] 3L_6261304_SNP [dm6]	T	A	3.598e^-4	0.699	UPSTREAM ImpL3 INTRON ImpL3
2L	14900968	2L_14900968_SNP [dm3] 2L_14900968_SNP [dm6]	G	A	3.601e^-4	0.699	INTERGENIC
2R	9495312	2R_9495312_SNP [dm3] 2R_13607807_SNP [dm6]	C	T	3.606e^-4	0.699	DOWNSTREAM CG12464 INTERGENIC
X	3380537	X_3380537_SNP [dm3] X_3486504_SNP [dm6]	A	G	3.606e^-4	0.699	NON_SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_sens
2R	12536502	2R_12536502_SNP [dm3] 2R_16648997_SNP [dm6]	A	G	3.607e^-4	0.699	UTR_3_PRIME gprs DOWNSTREAM gprs INTRON gprs
2L	10082295	2L_10082295_SNP [dm3] 2L_10082295_SNP [dm6]	C	T	3.607e^-4	0.699	INTRON CG44153	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5963561	3R_5963561_SNP [dm3] 3R_10137839_SNP [dm6]	T	C	3.614e^-4	0.699	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	14530374	3L_14530374_SNP [dm3] 3L_14537274_SNP [dm6]	A	G	3.618e^-4	0.699	UPSTREAM bbg & 1 other DOWNSTREAM CG43246 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	8158733	2R_8158733_SNP [dm3] 2R_12271228_SNP [dm6]	T	C	3.619e^-4	0.699	INTRON Cam	TF binding site mE1_TFBS_Trl
X	1192886	X_1192886_SNP [dm3] X_1298853_SNP [dm6]	A	G	3.620e^-4	0.699	UPSTREAM CG32811 INTRON DAAM	TF binding site mE1_TFBS_chinmo
2R	6277618	2R_6277618_MNP [dm3] 2R_10390113_MNP [dm6]	AATA	CTCG	3.621e^-4	0.699	INTRON CG42732
3R	22703255	3R_22703255_SNP [dm3] 3R_26877533_SNP [dm6]	G	A	3.624e^-4	0.699	DOWNSTREAM ms_3_K81 INTRON CG5500 & 1 other	TF binding site mE1_TFBS_HSA
2R	8127518	2R_8127518_SNP [dm3] 2R_12240013_SNP [dm6]	A	G	3.630e^-4	0.699	UPSTREAM CG13170 INTERGENIC
3L	712322	3L_712322_SNP [dm3] 3L_712322_SNP [dm6]	A	G	3.632e^-4	0.699	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	21488631	3R_21488631_SNP [dm3] 3R_25662909_SNP [dm6]	G	C	3.634e^-4	0.699	SYNONYMOUS_CODING RASSF8 UPSTREAM CR45208	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26176177	3R_26176177_SNP [dm3] 3R_30350455_SNP [dm6]	G	C	3.636e^-4	0.699	INTRON hdc
2R	16543557	2R_16543557_SNP [dm3] 2R_20656052_SNP [dm6]	G	A	3.639e^-4	0.699	UPSTREAM CG16799 INTRON Lrt & 1 other
3R	10623183	3R_10623183_SNP [dm3] 3R_14797461_SNP [dm6]	C	T	3.640e^-4	0.699	SYNONYMOUS_CODING CG14855
2L	20998639	2L_20998639_SNP [dm3] 2L_20998639_SNP [dm6]	C	T	3.641e^-4	0.699	INTRON CG42238	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3L	4736899	3L_4736899_SNP [dm3] 3L_4736899_SNP [dm6]	G	A	3.643e^-4	0.699	INTRON RhoGEF64C
3R	23733298	3R_23733298_SNP [dm3] 3R_27907576_SNP [dm6]	T	A	3.643e^-4	0.699	INTERGENIC
3L	4338219	3L_4338219_SNP [dm3] 3L_4338219_SNP [dm6]	A	G	3.647e^-4	0.699	INTRON Cip4	TF binding site mE1_TFBS_inv
2R	10998591	2R_10998591_SNP [dm3] 2R_15111086_SNP [dm6]	G	T	3.648e^-4	0.699	INTERGENIC
2R	10998597	2R_10998597_SNP [dm3] 2R_15111092_SNP [dm6]	T	C	3.648e^-4	0.699	INTERGENIC
2R	10998602	2R_10998602_SNP [dm3] 2R_15111097_SNP [dm6]	A	T	3.648e^-4	0.699	INTERGENIC
2R	3532668	2R_3532668_SNP [dm3] 2R_7645163_SNP [dm6]	T	C	3.650e^-4	0.699	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340	TF binding site mE1_TFBS_sens
2R	17761515	2R_17761515_SNP [dm3] 2R_21874010_SNP [dm6]	C	G	3.653e^-4	0.699	INTRON Fili	TF binding site BDTNP1_TFBS_da mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	17797982	3R_17797982_SNP [dm3] 3R_21972260_SNP [dm6]	G	T	3.654e^-4	0.699	UPSTREAM Eip93F INTRON Eip93F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	10303393	3L_10303393_SNP [dm3] 3L_10310293_SNP [dm6]	G	C	3.655e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12458423	3L_12458423_SNP [dm3] 3L_12465323_SNP [dm6]	G	A	3.658e^-4	0.699	INTRON eyg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
X	5251218	X_5251218_SNP [dm3] X_5357185_SNP [dm6]	A	T	3.658e^-4	0.699	INTRON SK
3L	7943701	3L_7943701_SNP [dm3] 3L_7950601_SNP [dm6]	A	G	3.662e^-4	0.699	SYNONYMOUS_CODING exex
X	7699422	X_7699422_SNP [dm3] X_7805389_SNP [dm6]	G	C	3.668e^-4	0.699	INTERGENIC
3R	8735382	3R_8735382_SNP [dm3] 3R_12909660_SNP [dm6]	A	G	3.669e^-4	0.699	DOWNSTREAM CG10909 INTERGENIC
3R	5358523	3R_5358523_SNP [dm3] 3R_9532801_SNP [dm6]	A	T	3.669e^-4	0.699	NON_SYNONYMOUS_CODING by	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	712235	3L_712235_SNP [dm3] 3L_712235_SNP [dm6]	C	T	3.677e^-4	0.699	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
X	5849920	X_5849920_SNP [dm3] X_5955887_SNP [dm6]	A	G	3.683e^-4	0.699	INTRON CG6067
X	9614450	X_9614450_SNP [dm3] X_9720417_SNP [dm6]	T	C	3.685e^-4	0.699	INTERGENIC
3L	1857150	3L_1857150_SNP [dm3] 3L_1857150_SNP [dm6]	A	G	3.686e^-4	0.699	UPSTREAM CG12024 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10085537	2L_10085537_DEL [dm3] 2L_10085537_DEL [dm6]	CC	C	3.686e^-4	0.699	INTRON CG44153
2R	19895574	2R_19895574_SNP [dm3] 2R_24008051_SNP [dm6]	A	G	3.691e^-4	0.699	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad
3L	14357189	3L_14357189_SNP [dm3] 3L_14364089_SNP [dm6]	C	A	3.700e^-4	0.699	INTRON fz	TF binding site BDTNP1_TFBS_da
3L	743047	3L_743047_INS [dm3] 3L_743047_INS [dm6]	T	TTT	3.703e^-4	0.699	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	20347647	3R_20347647_SNP [dm3] 3R_24521925_SNP [dm6]	T	C	3.727e^-4	0.699	UTR_3_PRIME Pp1alpha-96A DOWNSTREAM Pp1alpha-96A & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19651865	2R_19651865_SNP [dm3] 2R_23764342_SNP [dm6]	G	A	3.729e^-4	0.699	INTRON CG9850
2L	15132193	2L_15132193_SNP [dm3] 2L_15132193_SNP [dm6]	A	T	3.731e^-4	0.699	DOWNSTREAM tRNA:L:35C INTERGENIC
3L	10928854	3L_10928854_SNP [dm3] 3L_10935754_SNP [dm6]	G	A	3.739e^-4	0.699	INTERGENIC
2L	20961752	2L_20961752_SNP [dm3] 2L_20961752_SNP [dm6]	G	A	3.741e^-4	0.699	INTERGENIC
2R	12543589	2R_12543589_SNP [dm3] 2R_16656084_SNP [dm6]	A	G	3.742e^-4	0.699	SYNONYMOUS_CODING Picot	TF binding site mE1_TFBS_cad
3L	10397631	3L_10397631_SNP [dm3] 3L_10404531_SNP [dm6]	T	G	3.743e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	7085336	3L_7085336_SNP [dm3] 3L_7092236_SNP [dm6]	A	C	3.747e^-4	0.699	UPSTREAM Cpr65Ec INTERGENIC
3L	22919566	3L_22919566_SNP [dm3] 3L_22926466_SNP [dm6]	A	G	3.750e^-4	0.699	INTERGENIC
3R	17861073	3R_17861073_SNP [dm3] 3R_22035351_SNP [dm6]	G	A	3.752e^-4	0.699	UTR_3_PRIME Fadd UPSTREAM pit & 1 other INTRON pit	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	5360873	3R_5360873_SNP [dm3] 3R_9535151_SNP [dm6]	A	T	3.753e^-4	0.699	DOWNSTREAM mura INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	19905502	2R_19905502_SNP [dm3] 2R_24017979_SNP [dm6]	T	C	3.753e^-4	0.699	SYNONYMOUS_CODING CG3121 UPSTREAM CG4324	TF binding site BDTNP1_TFBS_twi
3L	8747153	3L_8747153_SNP [dm3] 3L_8754053_SNP [dm6]	A	G	3.756e^-4	0.699	UTR_5_PRIME Fhos UPSTREAM Fhos
2L	15973668	2L_15973668_SNP [dm3] 2L_15973668_SNP [dm6]	A	G	3.759e^-4	0.699	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	17623578	3L_17623578_SNP [dm3] 3L_17630478_SNP [dm6]	C	T	3.761e^-4	0.699	UTR_3_PRIME CG7510 UPSTREAM CR44566
3R	19926618	3R_19926618_INS [dm3] 3R_24100896_INS [dm6]	C	CC	3.762e^-4	0.699	DOWNSTREAM Syx1A INTRON 4EHP
3L	17624527	3L_17624527_SNP [dm3] 3L_17631427_SNP [dm6]	G	T	3.767e^-4	0.699	DOWNSTREAM CG7510 EXON CR44566
2R	1323727	2R_1323727_SNP [dm3] 2R_5436222_SNP [dm6]	A	T	3.773e^-4	0.699	SYNONYMOUS_CODING laccase2
3R	22251213	3R_22251213_SNP [dm3] 3R_26425491_SNP [dm6]	A	G	3.778e^-4	0.699	SYNONYMOUS_CODING CG34291 UPSTREAM CG6503 INTRON CR31084
2R	5431949	2R_5431949_SNP [dm3] 2R_9544444_SNP [dm6]	A	G	3.780e^-4	0.699	UTR_3_PRIME CG1888 DOWNSTREAM CG1888	TF binding site BDTNP1_TFBS_dl
3R	15894203	3R_15894203_SNP [dm3] 3R_20068481_SNP [dm6]	A	G	3.783e^-4	0.699	INTERGENIC
3R	22201531	3R_22201531_SNP [dm3] 3R_26375809_SNP [dm6]	A	G	3.783e^-4	0.699	INTERGENIC
X	10502619	X_10502619_SNP [dm3] X_10608586_SNP [dm6]	T	C	3.790e^-4	0.699	INTRON CG43347	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19650794	2R_19650794_SNP [dm3] 2R_23763271_SNP [dm6]	G	T	3.790e^-4	0.699	INTRON CG9850
3L	13239943	3L_13239943_SNP [dm3] 3L_13246843_SNP [dm6]	T	A	3.794e^-4	0.699	DOWNSTREAM CG32119 INTRON caps
2R	10998575	2R_10998575_SNP [dm3] 2R_15111070_SNP [dm6]	T	G	3.801e^-4	0.699	INTERGENIC
3R	23299727	3R_23299727_SNP [dm3] 3R_27474005_SNP [dm6]	C	G	3.805e^-4	0.699	INTERGENIC
3L	3789154	3L_3789154_SNP [dm3] 3L_3789154_SNP [dm6]	T	G	3.805e^-4	0.699	INTRON CG32264	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	3789466	3L_3789466_SNP [dm3] 3L_3789466_SNP [dm6]	A	T	3.805e^-4	0.699	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	4545240	3L_4545240_SNP [dm3] 3L_4545240_SNP [dm6]	G	A	3.806e^-4	0.699	INTRON CG11357	TF binding site BDTNP1_TFBS_twi
2R	19286160	2R_19286160_SNP [dm3] 2R_23398637_SNP [dm6]	A	G	3.806e^-4	0.699	SYNONYMOUS_CODING CG3520	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11330120	2R_11330120_SNP [dm3] 2R_15442615_SNP [dm6]	C	G	3.812e^-4	0.699	INTRON CG43729
3R	25720912	3R_25720912_SNP [dm3] 3R_29895190_SNP [dm6]	T	C	3.820e^-4	0.699	UTR_5_PRIME CG31038 INTRON CG31038	TF binding site BDTNP1_TFBS_twi
3L	15760867	3L_15760867_SNP [dm3] 3L_15767767_SNP [dm6]	G	T	3.822e^-4	0.699	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5758264	2L_5758264_SNP [dm3] 2L_5758264_SNP [dm6]	A	C	3.824e^-4	0.699	INTRON CG11030	TF binding site mE1_TFBS_cad
2L	767212	2L_767212_SNP [dm3] 2L_767212_SNP [dm6]	T	C	3.828e^-4	0.699	INTERGENIC
2R	20366033	2R_20366033_SNP [dm3] 2R_24478510_SNP [dm6]	T	A	3.834e^-4	0.699	INTRON CG13579
2R	16543558	2R_16543558_SNP [dm3] 2R_20656053_SNP [dm6]	T	C	3.845e^-4	0.699	UPSTREAM CG16799 INTRON Lrt & 1 other
2R	6852585	2R_6852585_SNP [dm3] 2R_10965080_SNP [dm6]	G	T	3.847e^-4	0.699	INTERGENIC
X	4481926	X_4481926_DEL [dm3] X_4587893_DEL [dm6]	TGATTCAGCT	T	3.848e^-4	0.699	INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_sens

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.688e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.01093

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	10.8928	0.0043

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2429 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	15002546	2R_15002546_SNP [dm3] 2R_19115041_SNP [dm6]	T	C	1.686e^-6	0.71	INTRON 5-HT1A
X	20218412	X_20218412_SNP [dm3] X_20347385_SNP [dm6]	T	A	2.359e^-6	0.71	INTERGENIC
3L	2649575	3L_2649575_SNP [dm3] 3L_2649575_SNP [dm6]	A	G	3.583e^-6	0.71	NON_SYNONYMOUS_CODING CG1246 DOWNSTREAM Aats-pro
3L	6055224	3L_6055224_SNP [dm3] 3L_6062124_SNP [dm6]	C	T	3.757e^-6	0.71	DOWNSTREAM CG6592 INTRON CG10472	TF binding site mE1_TFBS_cad
2R	6827617	2R_6827617_DEL [dm3] 2R_10940112_DEL [dm6]	TCA	T	3.846e^-6	0.71	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
3L	3090995	3L_3090995_SNP [dm3] 3L_3090995_SNP [dm6]	C	T	3.853e^-6	0.71	UTR_3_PRIME Cht7 DOWNSTREAM CG11486 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	6827616	2R_6827616_SNP [dm3] 2R_10940111_SNP [dm6]	T	C	4.538e^-6	0.71	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
3R	10628531	3R_10628531_SNP [dm3] 3R_14802809_SNP [dm6]	C	A	5.693e^-6	0.71	SYNONYMOUS_CODING CG14857
3L	2649565	3L_2649565_SNP [dm3] 3L_2649565_SNP [dm6]	A	G	5.768e^-6	0.71	SYNONYMOUS_CODING CG1246 DOWNSTREAM Aats-pro
3L	5729800	3L_5729800_SNP [dm3] 3L_5736700_SNP [dm6]	C	T	5.772e^-6	0.71	INTRON sif
X	20218360	X_20218360_SNP [dm3] X_20347333_SNP [dm6]	C	A	6.919e^-6	0.71	INTERGENIC
3L	2649550	3L_2649550_SNP [dm3] 3L_2649550_SNP [dm6]	G	T	7.547e^-6	0.71	SYNONYMOUS_CODING CG1246 DOWNSTREAM Aats-pro
2L	19598099	2L_19598099_SNP [dm3] 2L_19598099_SNP [dm6]	G	A	7.744e^-6	0.71	INTRON Lar
2L	7100238	2L_7100238_INS [dm3] 2L_7100238_INS [dm6]	G	GG	8.282e^-6	0.71	INTRON Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	12821148	2R_12821148_SNP [dm3] 2R_16933643_SNP [dm6]	C	T	8.635e^-6	0.71	INTRON Pkc53E	TF binding site BDTNP1_TFBS_twi
X	935094	X_935094_SNP [dm3] X_1041061_SNP [dm6]	G	A	9.041e^-6	0.71	UTR_5_PRIME su_w[a]_ INTRON su_w[a]_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_ttk
2R	13682125	2R_13682125_SNP [dm3] 2R_17794620_SNP [dm6]	A	G	9.181e^-6	0.71	INTRON Dhit	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	13772991	2R_13772991_SNP [dm3] 2R_17885486_SNP [dm6]	C	T	9.244e^-6	0.71	INTRON Elk
3R	5121979	3R_5121979_SNP [dm3] 3R_9296257_SNP [dm6]	T	G	9.754e^-6	0.71	INTRON CG8861
2R	7439749	2R_7439749_SNP [dm3] 2R_11552244_SNP [dm6]	T	C	9.965e^-6	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11864738	3L_11864738_SNP [dm3] 3L_11871638_SNP [dm6]	C	A	1.031e^-5	0.71	UPSTREAM CG5906 INTRON CG44837	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	7439729	2R_7439729_SNP [dm3] 2R_11552224_SNP [dm6]	G	C	1.053e^-5	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7969107	2L_7969107_SNP [dm3] 2L_7969107_SNP [dm6]	A	T	1.065e^-5	0.71	INTRON Snoo
2R	7439745	2R_7439745_SNP [dm3] 2R_11552240_SNP [dm6]	T	C	1.099e^-5	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19905418	2R_19905418_SNP [dm3] 2R_24017895_SNP [dm6]	C	T	1.107e^-5	0.71	SPLICE_SITE_REGION CG3121 UPSTREAM CG4324 INTRON CG3121	TF binding site BDTNP1_TFBS_twi
2R	13682182	2R_13682182_SNP [dm3] 2R_17794677_SNP [dm6]	G	A	1.176e^-5	0.71	INTRON Dhit	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	13095605	X_13095605_INS [dm3] X_13201572_INS [dm6]	G	GAAAATGGGAG...	1.184e^-5	0.71	FRAME_SHIFT CG44437 INTRON sno	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	13600672	3R_13600672_SNP [dm3] 3R_17774950_SNP [dm6]	C	T	1.241e^-5	0.71	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14385350	3L_14385350_SNP [dm3] 3L_14392250_SNP [dm6]	C	A	1.255e^-5	0.71	INTERGENIC
3L	11864652	3L_11864652_SNP [dm3] 3L_11871552_SNP [dm6]	T	A	1.256e^-5	0.71	UPSTREAM CG5906 INTRON CG44837	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	20532530	X_20532530_SNP [dm3] X_20661503_SNP [dm6]	G	T	1.264e^-5	0.71	UPSTREAM CG1835 DOWNSTREAM Cyp6v1 INTERGENIC
2L	4427675	2L_4427675_SNP [dm3] 2L_4427675_SNP [dm6]	A	T	1.353e^-5	0.71	INTRON CG15431
3L	14835265	3L_14835265_SNP [dm3] 3L_14842165_SNP [dm6]	T	C	1.365e^-5	0.71	INTRON CG17839
3L	14835275	3L_14835275_INS [dm3] 3L_14842175_INS [dm6]	T	TTGCAA	1.422e^-5	0.71	INTRON CG17839
2R	7439752	2R_7439752_DEL [dm3] 2R_11552247_DEL [dm6]	GTATG	G	1.438e^-5	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10628088	3R_10628088_SNP [dm3] 3R_14802366_SNP [dm6]	C	T	1.470e^-5	0.71	SYNONYMOUS_CODING CG14857	TF binding site mE1_TFBS_cad
3L	6055139	3L_6055139_SNP [dm3] 3L_6062039_SNP [dm6]	T	C	1.481e^-5	0.71	DOWNSTREAM CG6592 INTRON CG10472
2R	19904906	2R_19904906_SNP [dm3] 2R_24017383_SNP [dm6]	T	G	1.497e^-5	0.71	UPSTREAM CG3121 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2R	11330187	2R_11330187_SNP [dm3] 2R_15442682_SNP [dm6]	A	G	1.545e^-5	0.71	INTRON CG43729
2L	19480177	2L_19480177_SNP [dm3] 2L_19480177_SNP [dm6]	A	G	1.548e^-5	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	2926734	X_2926734_SNP [dm3] X_3032701_SNP [dm6]	C	A	1.557e^-5	0.71	INTRON kirre
X	15512455	X_15512455_SNP [dm3] X_15618422_SNP [dm6]	A	G	1.606e^-5	0.71	INTRON sog	TF binding site BDTNP1_TFBS_dl
3R	15325955	3R_15325955_DEL [dm3] 3R_19500233_DEL [dm6]	TCAGCAATCCATAAAT...	T	1.631e^-5	0.71	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19905384	2R_19905384_SNP [dm3] 2R_24017861_SNP [dm6]	C	T	1.667e^-5	0.71	UPSTREAM CG4324 INTRON CG3121	TF binding site BDTNP1_TFBS_twi
3L	20051801	3L_20051801_SNP [dm3] 3L_20058701_SNP [dm6]	T	A	1.722e^-5	0.71	UTR_3_PRIME sNPF-R
2R	15733645	2R_15733645_SNP [dm3] 2R_19846140_SNP [dm6]	C	G	1.843e^-5	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	7100231	2L_7100231_SNP [dm3] 2L_7100231_SNP [dm6]	T	G	1.852e^-5	0.71	INTRON Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	1.967e^-5	0.71	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7909123	3L_7909123_SNP [dm3] 3L_7916023_SNP [dm6]	G	C	1.973e^-5	0.71	UPSTREAM CG8111 DOWNSTREAM syd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	15090517	2L_15090517_SNP [dm3] 2L_15090517_SNP [dm6]	A	G	1.977e^-5	0.71	INTRON CG15270
X	2689994	X_2689994_SNP [dm3] X_2795961_SNP [dm6]	G	A	2.027e^-5	0.71	INTRON kirre & 1 other	regulatory region REDfly_CRMs
X	2690011	X_2690011_SNP [dm3] X_2795978_SNP [dm6]	G	A	2.027e^-5	0.71	INTRON kirre & 1 other	regulatory region REDfly_CRMs
X	2690031	X_2690031_SNP [dm3] X_2795998_SNP [dm6]	A	G	2.027e^-5	0.71	INTRON kirre & 1 other	regulatory region REDfly_CRMs
X	15567733	X_15567733_SNP [dm3] X_15673700_SNP [dm6]	T	C	2.104e^-5	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	21770308	3L_21770308_SNP [dm3] 3L_21777208_SNP [dm6]	G	A	2.194e^-5	0.71	DOWNSTREAM CG42689 INTRON CG42552	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14385354	3L_14385354_SNP [dm3] 3L_14392254_SNP [dm6]	G	A	2.209e^-5	0.71	INTERGENIC
3L	7943701	3L_7943701_SNP [dm3] 3L_7950601_SNP [dm6]	A	G	2.210e^-5	0.71	SYNONYMOUS_CODING exex
3L	22910302	3L_22910302_SNP [dm3] 3L_22917202_SNP [dm6]	A	G	2.277e^-5	0.71	INTRON CG12768
2R	11481430	2R_11481430_SNP [dm3] 2R_15593925_SNP [dm6]	T	C	2.289e^-5	0.71	INTERGENIC
X	12798505	X_12798505_SNP [dm3] X_12904472_SNP [dm6]	C	T	2.357e^-5	0.71	SYNONYMOUS_CODING CG4404 UPSTREAM CG4407	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14057292	3L_14057292_SNP [dm3] 3L_14064192_SNP [dm6]	C	T	2.361e^-5	0.71	INTRON CG32138	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	14931260	3L_14931260_SNP [dm3] 3L_14938160_SNP [dm6]	G	C	2.539e^-5	0.71	INTRON DCX-EMAP
2L	1383805	2L_1383805_SNP [dm3] 2L_1383805_SNP [dm6]	G	C	2.542e^-5	0.71	INTRON lea
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	2.548e^-5	0.71	EXON CR44950
3L	1857609	3L_1857609_SNP [dm3] 3L_1857609_SNP [dm6]	A	G	2.551e^-5	0.71	NON_SYNONYMOUS_CODING CG12024	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2690048	X_2690048_SNP [dm3] X_2796015_SNP [dm6]	A	C	2.584e^-5	0.71	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	15294845	3R_15294845_SNP [dm3] 3R_19469123_SNP [dm6]	G	A	2.624e^-5	0.71	INTRON Dys	TF binding site mE1_TFBS_inv
3L	21773497	3L_21773497_SNP [dm3] 3L_21780397_SNP [dm6]	T	A	2.666e^-5	0.71	INTERGENIC
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	2.701e^-5	0.71	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	2926031	X_2926031_SNP [dm3] X_3031998_SNP [dm6]	C	A	2.844e^-5	0.71	INTRON kirre
3L	2645586	3L_2645586_SNP [dm3] 3L_2645586_SNP [dm6]	T	G	2.908e^-5	0.71	INTRON CG1143	TF binding site mE1_TFBS_cad
3L	6100247	3L_6100247_SNP [dm3] 3L_6107147_SNP [dm6]	C	T	2.940e^-5	0.71	INTRON Ets65A	TF binding site mE1_TFBS_cad
3L	5945045	3L_5945045_SNP [dm3] 3L_5951945_SNP [dm6]	T	G	2.943e^-5	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6871143	2L_6871143_SNP [dm3] 2L_6871143_SNP [dm6]	G	A	2.983e^-5	0.71	UPSTREAM Nha1 DOWNSTREAM CR44915 INTERGENIC
3L	6100256	3L_6100256_SNP [dm3] 3L_6107156_SNP [dm6]	A	C	3.004e^-5	0.71	INTRON Ets65A	TF binding site mE1_TFBS_cad
3L	7909074	3L_7909074_SNP [dm3] 3L_7915974_SNP [dm6]	C	A	3.023e^-5	0.71	UPSTREAM CG8111 DOWNSTREAM syd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	6827607	2R_6827607_SNP [dm3] 2R_10940102_SNP [dm6]	T	C	3.047e^-5	0.71	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
X	4091094	X_4091094_DEL [dm3] X_4197061_DEL [dm6]	AAA	A	3.075e^-5	0.71	INTRON Fas2
3L	6100265	3L_6100265_SNP [dm3] 3L_6107165_SNP [dm6]	C	T	3.178e^-5	0.71	INTRON Ets65A	TF binding site mE1_TFBS_cad
2R	18952468	2R_18952468_SNP [dm3] 2R_23064945_SNP [dm6]	C	G	3.208e^-5	0.71	SYNONYMOUS_CODING PPO3 UPSTREAM CG9890	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	11330070	2R_11330070_SNP [dm3] 2R_15442565_SNP [dm6]	G	A	3.294e^-5	0.71	INTRON CG43729
2L	21310149	2L_21310149_SNP [dm3] 2L_21310149_SNP [dm6]	G	T	3.342e^-5	0.71	UPSTREAM Mio & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	765636	3L_765636_SNP [dm3] 3L_765636_SNP [dm6]	G	T	3.346e^-5	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4496065	2R_4496065_INS [dm3] 2R_8608560_INS [dm6]	A	ACGA	3.371e^-5	0.71	INTRON rgr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12373393	3L_12373393_SNP [dm3] 3L_12380293_SNP [dm6]	G	C	3.403e^-5	0.71	INTRON Ncc69	TF binding site BDTNP1_TFBS_twi
3L	6254991	3L_6254991_SNP [dm3] 3L_6261891_SNP [dm6]	T	C	3.432e^-5	0.71	UPSTREAM ImpL3 INTRON ImpL3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2311187	3L_2311187_SNP [dm3] 3L_2311187_SNP [dm6]	C	A	3.680e^-5	0.71	INTERGENIC
3L	1999484	3L_1999484_SNP [dm3] 3L_1999484_SNP [dm6]	C	T	3.690e^-5	0.71	INTERGENIC
2L	6705710	2L_6705710_SNP [dm3] 2L_6705710_SNP [dm6]	T	C	3.699e^-5	0.71	INTRON Tsp
3R	10629060	3R_10629060_SNP [dm3] 3R_14803338_SNP [dm6]	C	T	3.722e^-5	0.71	NON_SYNONYMOUS_CODING CG14857 DOWNSTREAM btsz	TF binding site mE1_TFBS_cad
2L	2930807	2L_2930807_SNP [dm3] 2L_2930807_SNP [dm6]	C	T	3.796e^-5	0.71	INTRON lilli
3L	12033758	3L_12033758_SNP [dm3] 3L_12040658_SNP [dm6]	G	T	3.828e^-5	0.71	INTRON rols
2R	12457966	2R_12457966_SNP [dm3] 2R_16570461_SNP [dm6]	T	A	3.890e^-5	0.71	DOWNSTREAM CG4945 INTRON RpS15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21388654	3R_21388654_SNP [dm3] 3R_25562932_SNP [dm6]	C	T	3.904e^-5	0.71	INTRON msi
2L	15090507	2L_15090507_SNP [dm3] 2L_15090507_SNP [dm6]	T	C	3.956e^-5	0.71	INTRON CG15270
2R	18475324	2R_18475324_DEL [dm3] 2R_22587819_DEL [dm6]	GA	G	3.962e^-5	0.71	INTRON dnr1
X	20532529	X_20532529_SNP [dm3] X_20661502_SNP [dm6]	A	T	4.055e^-5	0.71	UPSTREAM CG1835 DOWNSTREAM Cyp6v1 INTERGENIC
2R	19683955	2R_19683955_INS [dm3] 2R_23796432_INS [dm6]	G	GGG	4.117e^-5	0.71	INTRON CG9850	TF binding site mE1_TFBS_HSA
3L	6255006	3L_6255006_SNP [dm3] 3L_6261906_SNP [dm6]	G	C	4.176e^-5	0.71	UPSTREAM ImpL3 INTRON ImpL3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14248500	3L_14248500_SNP [dm3] 3L_14255400_SNP [dm6]	G	T	4.268e^-5	0.71	INTERGENIC
X	4091100	X_4091100_SNP [dm3] X_4197067_SNP [dm6]	G	C	4.291e^-5	0.71	INTRON Fas2
3L	6055272	3L_6055272_SNP [dm3] 3L_6062172_SNP [dm6]	A	T	4.316e^-5	0.71	DOWNSTREAM CG6592 INTRON CG10472	TF binding site mE1_TFBS_cad
2R	14219218	2R_14219218_DEL [dm3] 2R_18331713_DEL [dm6]	AGGAAACCCCAATAGA...	A	4.327e^-5	0.71	INTRON sbb	TF binding site mE1_TFBS_inv
2L	12488573	2L_12488573_INS [dm3] 2L_12488573_INS [dm6]	C	CAAC	4.333e^-5	0.71	INTRON bun	TF binding site BDTNP1_TFBS_twi
2L	7613199	2L_7613199_SNP [dm3] 2L_7613199_SNP [dm6]	A	G	4.413e^-5	0.71	INTRON CG6739
X	8956566	X_8956566_SNP [dm3] X_9062533_SNP [dm6]	T	A	4.439e^-5	0.71	INTRON CG15365
3R	25526173	3R_25526173_SNP [dm3] 3R_29700451_SNP [dm6]	G	T	4.575e^-5	0.71	INTERGENIC
3L	1708679	3L_1708679_SNP [dm3] 3L_1708679_SNP [dm6]	T	C	4.600e^-5	0.71	INTRON CG7991
3L	1858016	3L_1858016_SNP [dm3] 3L_1858016_SNP [dm6]	A	G	4.656e^-5	0.71	SYNONYMOUS_CODING CG12024	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10237153	2L_10237153_SNP [dm3] 2L_10237153_SNP [dm6]	G	A	4.702e^-5	0.71	SYNONYMOUS_CODING mthl15
3L	6290110	3L_6290110_SNP [dm3] 3L_6297010_SNP [dm6]	C	G	4.711e^-5	0.71	INTERGENIC
3L	4686742	3L_4686742_SNP [dm3] 3L_4686742_SNP [dm6]	T	C	4.731e^-5	0.71	DOWNSTREAM CG7514 INTRON axo
3R	23199030	3R_23199030_SNP [dm3] 3R_27373308_SNP [dm6]	G	T	4.737e^-5	0.71	DOWNSTREAM CG42534 INTERGENIC
3L	6254404	3L_6254404_SNP [dm3] 3L_6261304_SNP [dm6]	T	A	4.769e^-5	0.71	UPSTREAM ImpL3 INTRON ImpL3
3R	24990813	3R_24990813_SNP [dm3] 3R_29165091_SNP [dm6]	T	G	4.786e^-5	0.71	UPSTREAM CG11898 DOWNSTREAM CG11897 INTERGENIC
2R	11330120	2R_11330120_SNP [dm3] 2R_15442615_SNP [dm6]	C	G	4.904e^-5	0.71	INTRON CG43729
2R	19024800	2R_19024800_SNP [dm3] 2R_23137277_SNP [dm6]	G	A	4.908e^-5	0.71	INTERGENIC
3L	6100268	3L_6100268_SNP [dm3] 3L_6107168_SNP [dm6]	G	C	4.936e^-5	0.71	INTRON Ets65A	TF binding site mE1_TFBS_cad
X	12861617	X_12861617_SNP [dm3] X_12967584_SNP [dm6]	C	A	4.945e^-5	0.71	UPSTREAM Mur11Da INTERGENIC
2R	11330066	2R_11330066_SNP [dm3] 2R_15442561_SNP [dm6]	G	T	4.951e^-5	0.71	INTRON CG43729
3L	5945033	3L_5945033_SNP [dm3] 3L_5951933_SNP [dm6]	G	A	5.006e^-5	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13348612	X_13348612_DEL [dm3] X_13454579_DEL [dm6]	TT	T	5.067e^-5	0.71	INTRON Neto
2R	10605861	2R_10605861_SNP [dm3] 2R_14718356_SNP [dm6]	A	C	5.111e^-5	0.71	INTERGENIC
3R	10628425	3R_10628425_SNP [dm3] 3R_14802703_SNP [dm6]	C	A	5.134e^-5	0.71	INTRON CG14857
3R	18579070	3R_18579070_SNP [dm3] 3R_22753348_SNP [dm6]	G	T	5.196e^-5	0.71	INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14385572	3L_14385572_SNP [dm3] 3L_14392472_SNP [dm6]	A	T	5.230e^-5	0.71	INTERGENIC
2R	20593909	2R_20593909_SNP [dm3] 2R_24706386_SNP [dm6]	C	T	5.410e^-5	0.71	INTRON Mid1	TF binding site mE1_TFBS_chinmo
3L	6092697	3L_6092697_SNP [dm3] 3L_6099597_SNP [dm6]	T	C	5.434e^-5	0.71	INTRON Ets65A
3R	5121954	3R_5121954_SNP [dm3] 3R_9296232_SNP [dm6]	A	G	5.452e^-5	0.71	INTRON CG8861
3L	12023651	3L_12023651_SNP [dm3] 3L_12030551_SNP [dm6]	G	A	5.543e^-5	0.71	INTRON rols	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2647819	3L_2647819_SNP [dm3] 3L_2647819_SNP [dm6]	T	G	5.600e^-5	0.71	UPSTREAM CG1246 DOWNSTREAM CG1143 INTERGENIC
3R	16995597	3R_16995597_SNP [dm3] 3R_21169875_SNP [dm6]	C	A	5.660e^-5	0.71	INTRON SNF4Agamma
3L	8966526	3L_8966526_SNP [dm3] 3L_8973426_SNP [dm6]	A	T	5.676e^-5	0.71	INTRON pix	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2643078	3L_2643078_SNP [dm3] 3L_2643078_SNP [dm6]	A	T	5.830e^-5	0.71	INTRON CG14949
3L	7378396	3L_7378396_SNP [dm3] 3L_7385296_SNP [dm6]	G	A	5.832e^-5	0.71	DOWNSTREAM CG8564 INTRON smid
2R	17034063	2R_17034063_SNP [dm3] 2R_21146558_SNP [dm6]	C	T	5.837e^-5	0.71	SYNONYMOUS_CODING Hmg-2 DOWNSTREAM Xbp1 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	3375366	X_3375366_SNP [dm3] X_3481333_SNP [dm6]	T	A	5.881e^-5	0.71	START_GAINED CG10804 UTR_5_PRIME CG10804 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	6255036	3L_6255036_SNP [dm3] 3L_6261936_SNP [dm6]	T	G	5.904e^-5	0.71	UPSTREAM ImpL3 INTRON ImpL3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16341629	X_16341629_SNP [dm3] X_16447596_SNP [dm6]	T	G	5.916e^-5	0.71	UTR_3_PRIME CG34015 UPSTREAM eIF-2alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3262929	3L_3262929_SNP [dm3] 3L_3262929_SNP [dm6]	G	A	5.955e^-5	0.71	INTRON ckd
X	2926747	X_2926747_SNP [dm3] X_3032714_SNP [dm6]	G	A	5.979e^-5	0.71	INTRON kirre
3L	2647839	3L_2647839_SNP [dm3] 3L_2647839_SNP [dm6]	C	G	6.000e^-5	0.71	UPSTREAM CG1246 DOWNSTREAM CG1143 INTERGENIC
X	8113188	X_8113188_SNP [dm3] X_8219155_SNP [dm6]	C	T	6.017e^-5	0.71	INTRON sdt	TF binding site BDTNP1_TFBS_dl
3L	20746112	3L_20746112_SNP [dm3] 3L_20753012_SNP [dm6]	C	T	6.019e^-5	0.71	INTERGENIC
3L	2170090	3L_2170090_SNP [dm3] 3L_2170090_SNP [dm6]	A	G	6.021e^-5	0.71	SYNONYMOUS_CODING CG5704 UPSTREAM CG15879
3L	8966534	3L_8966534_SNP [dm3] 3L_8973434_SNP [dm6]	A	G	6.073e^-5	0.71	INTRON pix	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22251274	3R_22251274_DEL [dm3] 3R_26425552_DEL [dm6]	AT	G	6.205e^-5	0.71	UPSTREAM CG6503 INTRON CR31084 & 1 other
2L	3719125	2L_3719125_SNP [dm3] 2L_3719125_SNP [dm6]	T	C	6.247e^-5	0.71	INTRON Shaw
3L	2645866	3L_2645866_SNP [dm3] 3L_2645866_SNP [dm6]	A	G	6.264e^-5	0.71	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6472399	3L_6472399_INS [dm3] 3L_6479299_INS [dm6]	A	AC	6.297e^-5	0.71	INTRON CG42747
X	21498323	X_21498323_INS [dm3] X_21627296_INS [dm6]	A	ATA	6.344e^-5	0.71	INTRON DIP1	transposable element FlyBase
3L	7369219	3L_7369219_SNP [dm3] 3L_7376119_SNP [dm6]	G	C	6.500e^-5	0.71	INTRON SMSr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	20279371	2R_20279371_SNP [dm3] 2R_24391848_SNP [dm6]	C	T	6.556e^-5	0.71	DOWNSTREAM slik EXON CR44813
2L	19796111	2L_19796111_SNP [dm3] 2L_19796111_SNP [dm6]	G	T	6.571e^-5	0.71	UPSTREAM sick & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3L	6254943	3L_6254943_SNP [dm3] 3L_6261843_SNP [dm6]	C	T	6.585e^-5	0.71	UPSTREAM ImpL3 INTRON ImpL3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15874982	2R_15874982_SNP [dm3] 2R_19987477_SNP [dm6]	C	T	6.626e^-5	0.71	INTERGENIC
3R	25597674	3R_25597674_SNP [dm3] 3R_29771952_SNP [dm6]	G	A	6.837e^-5	0.71	UPSTREAM kay INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15894172	3R_15894172_SNP [dm3] 3R_20068450_SNP [dm6]	T	A	6.838e^-5	0.71	INTERGENIC
2R	7568652	2R_7568652_SNP [dm3] 2R_11681147_SNP [dm6]	T	C	6.877e^-5	0.71	INTRON Buffy
2R	6827482	2R_6827482_SNP [dm3] 2R_10939977_SNP [dm6]	T	C	6.883e^-5	0.71	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
2L	7613212	2L_7613212_SNP [dm3] 2L_7613212_SNP [dm6]	C	T	7.003e^-5	0.71	INTRON CG6739
3R	5087274	3R_5087274_SNP [dm3] 3R_9261552_SNP [dm6]	C	A	7.030e^-5	0.71	INTRON VhaM8.9	TF binding site mE1_TFBS_HSA
3L	1850522	3L_1850522_SNP [dm3] 3L_1850522_SNP [dm6]	G	A	7.151e^-5	0.71	DOWNSTREAM CG13936 INTERGENIC
3R	11008848	3R_11008848_SNP [dm3] 3R_15183126_SNP [dm6]	A	T	7.173e^-5	0.71	INTRON Gyc88E
2L	5095107	2L_5095107_SNP [dm3] 2L_5095107_SNP [dm6]	A	C	7.225e^-5	0.71	SYNONYMOUS_CODING CG5828	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15196083	3R_15196083_SNP [dm3] 3R_19370361_SNP [dm6]	T	C	7.229e^-5	0.71	INTRON Ino80
3L	2646310	3L_2646310_SNP [dm3] 3L_2646310_SNP [dm6]	T	C	7.271e^-5	0.71	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6252879	3L_6252879_SNP [dm3] 3L_6259779_SNP [dm6]	G	T	7.273e^-5	0.71	SYNONYMOUS_CODING ImpL3
3L	6254060	3L_6254060_DEL [dm3] 3L_6260960_DEL [dm6]	CT	C	7.273e^-5	0.71	INTRON ImpL3
3L	2643105	3L_2643105_DEL [dm3] 3L_2643105_DEL [dm6]	TAATAT	T	7.313e^-5	0.71	INTRON CG14949
2L	5095096	2L_5095096_SNP [dm3] 2L_5095096_SNP [dm6]	T	C	7.342e^-5	0.71	SYNONYMOUS_CODING CG5828	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10808043	3R_10808043_SNP [dm3] 3R_14982321_SNP [dm6]	A	G	7.402e^-5	0.71	INTERGENIC
3R	23564443	3R_23564443_SNP [dm3] 3R_27738721_SNP [dm6]	T	C	7.411e^-5	0.71	INTRON Ets98B
2R	12177921	2R_12177921_SNP [dm3] 2R_16290416_SNP [dm6]	T	G	7.491e^-5	0.71	SYNONYMOUS_CODING JhI-26 EXON CR43730	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14342803	3R_14342803_SNP [dm3] 3R_18517081_SNP [dm6]	G	A	7.502e^-5	0.71	INTRON fru
3L	6100199	3L_6100199_SNP [dm3] 3L_6107099_SNP [dm6]	C	T	7.505e^-5	0.71	INTRON Ets65A	TF binding site mE1_TFBS_cad
3L	13907660	3L_13907660_SNP [dm3] 3L_13914560_SNP [dm6]	C	T	7.523e^-5	0.71	INTRON Rgl
3L	4642797	3L_4642797_SNP [dm3] 3L_4642797_SNP [dm6]	C	T	7.546e^-5	0.71	SYNONYMOUS_CODING axo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20746122	3L_20746122_SNP [dm3] 3L_20753022_SNP [dm6]	C	A	7.554e^-5	0.71	INTERGENIC
3L	4642796	3L_4642796_SNP [dm3] 3L_4642796_SNP [dm6]	T	G	7.580e^-5	0.71	NON_SYNONYMOUS_CODING axo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1857653	3L_1857653_SNP [dm3] 3L_1857653_SNP [dm6]	C	T	7.624e^-5	0.71	SYNONYMOUS_CODING CG12024	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10082495	2L_10082495_SNP [dm3] 2L_10082495_SNP [dm6]	G	A	7.706e^-5	0.71	INTRON CG44153
3L	14357140	3L_14357140_SNP [dm3] 3L_14364040_SNP [dm6]	T	A	7.730e^-5	0.71	INTRON fz	TF binding site BDTNP1_TFBS_da
3R	4226391	3R_4226391_DEL [dm3] 3R_8400669_DEL [dm6]	ATATGA	A	7.741e^-5	0.71	INTRON CG45263
2R	9131495	2R_9131495_SNP [dm3] 2R_13243990_SNP [dm6]	G	T	7.765e^-5	0.71	DOWNSTREAM CR45278 INTERGENIC
3L	6289898	3L_6289898_SNP [dm3] 3L_6296798_SNP [dm6]	A	C	7.772e^-5	0.71	INTERGENIC
3L	18577019	3L_18577019_SNP [dm3] 3L_18583919_SNP [dm6]	A	T	7.812e^-5	0.71	EXON CR45435
3L	11236601	3L_11236601_SNP [dm3] 3L_11243501_SNP [dm6]	G	A	7.825e^-5	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11404306	3L_11404306_SNP [dm3] 3L_11411206_SNP [dm6]	T	C	7.883e^-5	0.71	INTERGENIC
2R	6595799	2R_6595799_SNP [dm3] 2R_10708294_SNP [dm6]	C	T	7.914e^-5	0.71	SYNONYMOUS_CODING stan	TF binding site mE1_TFBS_cad
2R	6827605	2R_6827605_SNP [dm3] 2R_10940100_SNP [dm6]	C	T	7.953e^-5	0.71	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
3L	12023901	3L_12023901_SNP [dm3] 3L_12030801_SNP [dm6]	C	T	8.099e^-5	0.71	INTRON rols	TF binding site mE1_TFBS_cad
3L	12519674	3L_12519674_SNP [dm3] 3L_12526574_SNP [dm6]	G	A	8.104e^-5	0.71	DOWNSTREAM nst INTRON eIF-2beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12177756	2R_12177756_SNP [dm3] 2R_16290251_SNP [dm6]	G	A	8.184e^-5	0.71	SYNONYMOUS_CODING JhI-26 EXON CR43730
3R	23199029	3R_23199029_SNP [dm3] 3R_27373307_SNP [dm6]	C	A	8.292e^-5	0.71	DOWNSTREAM CG42534 INTERGENIC
2L	17354831	2L_17354831_SNP [dm3] 2L_17354831_SNP [dm6]	T	C	8.332e^-5	0.71	UPSTREAM CR44345 & 1 other INTERGENIC
X	9794806	X_9794806_SNP [dm3] X_9900773_SNP [dm6]	A	T	8.352e^-5	0.71	INTERGENIC
3L	12093643	3L_12093643_SNP [dm3] 3L_12100543_SNP [dm6]	T	C	8.366e^-5	0.71	INTERGENIC
3L	13870686	3L_13870686_SNP [dm3] 3L_13877586_SNP [dm6]	T	G	8.420e^-5	0.71	INTRON dysc
3L	7370439	3L_7370439_SNP [dm3] 3L_7377339_SNP [dm6]	A	T	8.485e^-5	0.71	INTRON SMSr
3L	2170084	3L_2170084_SNP [dm3] 3L_2170084_SNP [dm6]	A	C	8.549e^-5	0.71	SYNONYMOUS_CODING CG5704 UPSTREAM CG15879
3R	21730728	3R_21730728_SNP [dm3] 3R_25905006_SNP [dm6]	A	C	8.592e^-5	0.71	DOWNSTREAM CG31089 & 1 other INTRON CR43259
2R	16289150	2R_16289150_SNP [dm3] 2R_20401645_SNP [dm6]	G	A	8.612e^-5	0.71	INTERGENIC
2R	7568240	2R_7568240_SNP [dm3] 2R_11680735_SNP [dm6]	A	G	8.704e^-5	0.71	INTRON Buffy
3L	2651856	3L_2651856_SNP [dm3] 3L_2651856_SNP [dm6]	T	C	8.708e^-5	0.71	UPSTREAM Snup & 2 others INTERGENIC
3L	12730661	3L_12730661_SNP [dm3] 3L_12737561_SNP [dm6]	T	C	8.718e^-5	0.71	SYNONYMOUS_CODING Ptp69D	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4596948	3R_4596948_SNP [dm3] 3R_8771226_SNP [dm6]	C	A	8.756e^-5	0.71	DOWNSTREAM CG13318 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	20642826	2R_20642826_SNP [dm3] 2R_24755303_SNP [dm6]	A	T	8.770e^-5	0.71	NON_SYNONYMOUS_CODING CG30421	TF binding site mE1_TFBS_cad
3L	12123490	3L_12123490_SNP [dm3] 3L_12130390_SNP [dm6]	T	C	8.790e^-5	0.71	SYNONYMOUS_CODING Lsp2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	16081880	2L_16081880_SNP [dm3] 2L_16081880_SNP [dm6]	C	A	8.908e^-5	0.71	DOWNSTREAM beat-Ia INTERGENIC
X	4730572	X_4730572_SNP [dm3] X_4836539_SNP [dm6]	T	A	8.922e^-5	0.71	INTERGENIC
2R	12177771	2R_12177771_SNP [dm3] 2R_16290266_SNP [dm6]	A	G	8.936e^-5	0.71	SYNONYMOUS_CODING JhI-26 EXON CR43730
2R	6827590	2R_6827590_SNP [dm3] 2R_10940085_SNP [dm6]	A	T	8.999e^-5	0.71	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
2L	3380243	2L_3380243_DEL [dm3] 2L_3380243_DEL [dm6]	GAGG	G	9.005e^-5	0.71	INTERGENIC
X	3470412	X_3470412_SNP [dm3] X_3576379_SNP [dm6]	T	G	9.012e^-5	0.71	INTRON AstA-R1
X	1521549	X_1521549_SNP [dm3] X_1627516_SNP [dm6]	T	C	9.021e^-5	0.71	INTRON Mur2B & 1 other	TF binding site mE1_TFBS_chinmo
2R	12458046	2R_12458046_SNP [dm3] 2R_16570541_SNP [dm6]	A	T	9.063e^-5	0.71	DOWNSTREAM CG4945 INTRON RpS15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11864435	3L_11864435_SNP [dm3] 3L_11871335_SNP [dm6]	C	T	9.077e^-5	0.71	UPSTREAM CG5906 INTRON CG44837
3L	1201016	3L_1201016_SNP [dm3] 3L_1201016_SNP [dm6]	A	G	9.087e^-5	0.71	UTR_5_PRIME mwh DOWNSTREAM CG32335
3R	15323189	3R_15323189_INS [dm3] 3R_19497467_INS [dm6]	A	AATTGAA	9.094e^-5	0.71	INTRON Dys
2L	19796114	2L_19796114_INS [dm3] 2L_19796114_INS [dm6]	A	AAACTATGATTTAGATTA...	9.100e^-5	0.71	UPSTREAM sick & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3L	4164058	3L_4164058_SNP [dm3] 3L_4164058_SNP [dm6]	G	A	9.121e^-5	0.71	SYNONYMOUS_CODING mas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12132758	2R_12132758_SNP [dm3] 2R_16245253_SNP [dm6]	G	T	9.167e^-5	0.71	INTRON CngA	TF binding site mE1_TFBS_cad
3L	3951088	3L_3951088_SNP [dm3] 3L_3951088_SNP [dm6]	C	G	9.205e^-5	0.71	DOWNSTREAM CG14984 INTERGENIC
2R	19905402	2R_19905402_SNP [dm3] 2R_24017879_SNP [dm6]	A	T	9.255e^-5	0.71	UPSTREAM CG4324 INTRON CG3121	TF binding site BDTNP1_TFBS_twi
2L	7195840	2L_7195840_SNP [dm3] 2L_7195840_SNP [dm6]	G	A	9.300e^-5	0.71	SYNONYMOUS_CODING CG4502
2R	12178178	2R_12178178_SNP [dm3] 2R_16290673_SNP [dm6]	C	A	9.300e^-5	0.71	NON_SYNONYMOUS_CODING JhI-26 UPSTREAM CG30100 & 1 other EXON CR43730
2R	6930932	2R_6930932_SNP [dm3] 2R_11043427_SNP [dm6]	A	G	9.302e^-5	0.71	INTRON luna	TF binding site mE1_TFBS_cad
3L	22923904	3L_22923904_INS [dm3] 3L_22930804_INS [dm6]	A	ACTTA	9.371e^-5	0.71	INTERGENIC
3L	742992	3L_742992_DEL [dm3] 3L_742992_DEL [dm6]	ATGGTTTTTGATAACTAA...	A	9.413e^-5	0.71	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	3763539	3L_3763539_SNP [dm3] 3L_3763539_SNP [dm6]	A	G	9.422e^-5	0.71	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14357173	3L_14357173_SNP [dm3] 3L_14364073_SNP [dm6]	T	A	9.451e^-5	0.71	INTRON fz	TF binding site BDTNP1_TFBS_da
2R	12195706	2R_12195706_SNP [dm3] 2R_16308201_SNP [dm6]	C	T	9.517e^-5	0.71	UTR_5_PRIME Nox UPSTREAM Nox	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	9389778	X_9389778_SNP [dm3] X_9495745_SNP [dm6]	T	C	9.557e^-5	0.71	UTR_5_PRIME mgl INTRON mgl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	7100439	2L_7100439_SNP [dm3] 2L_7100439_SNP [dm6]	G	C	9.612e^-5	0.71	SYNONYMOUS_CODING Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	5270530	2L_5270530_SNP [dm3] 2L_5270530_SNP [dm6]	A	T	9.620e^-5	0.71	DOWNSTREAM Cyp4ac3 INTRON tkv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	13413422	2L_13413422_SNP [dm3] 2L_13413422_SNP [dm6]	A	C	9.654e^-5	0.71	UTR_3_PRIME CG16848 DOWNSTREAM CG16956	TF binding site mE1_TFBS_cad
X	13348662	X_13348662_SNP [dm3] X_13454629_SNP [dm6]	T	C	9.660e^-5	0.71	INTRON Neto
X	9794836	X_9794836_DEL [dm3] X_9900803_DEL [dm6]	AA	A	9.665e^-5	0.71	INTERGENIC
3R	14343981	3R_14343981_SNP [dm3] 3R_18518259_SNP [dm6]	A	T	9.694e^-5	0.71	INTRON fru
3L	7777439	3L_7777439_SNP [dm3] 3L_7784339_SNP [dm6]	C	T	9.760e^-5	0.71	INTRON CG32369
3L	7373521	3L_7373521_SNP [dm3] 3L_7380421_SNP [dm6]	A	C	9.771e^-5	0.71	INTRON SMSr
3R	5121977	3R_5121977_SNP [dm3] 3R_9296255_SNP [dm6]	A	T	9.776e^-5	0.71	INTRON CG8861
2R	6924104	2R_6924104_SNP [dm3] 2R_11036599_SNP [dm6]	A	C	9.805e^-5	0.71	INTRON luna
X	5075570	X_5075570_SNP [dm3] X_5181537_SNP [dm6]	G	A	9.817e^-5	0.71	INTRON rg & 2 others
3L	6254972	3L_6254972_SNP [dm3] 3L_6261872_SNP [dm6]	G	A	9.923e^-5	0.71	UPSTREAM ImpL3 INTRON ImpL3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14357158	3L_14357158_SNP [dm3] 3L_14364058_SNP [dm6]	C	A	9.930e^-5	0.71	INTRON fz	TF binding site BDTNP1_TFBS_da
3R	22673907	3R_22673907_SNP [dm3] 3R_26848185_SNP [dm6]	G	C	9.934e^-5	0.71	INTRON Lerp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8134408	2R_8134408_SNP [dm3] 2R_12246903_SNP [dm6]	G	T	9.940e^-5	0.71	EXON CR44315
3R	14344026	3R_14344026_SNP [dm3] 3R_18518304_SNP [dm6]	A	T	1.003e^-4	0.71	INTRON fru
3L	1193177	3L_1193177_SNP [dm3] 3L_1193177_SNP [dm6]	T	C	1.010e^-4	0.71	UPSTREAM Trh INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	13907667	3L_13907667_INS [dm3] 3L_13914567_INS [dm6]	T	TT	1.017e^-4	0.71	INTRON Rgl
X	5039294	X_5039294_SNP [dm3] X_5145261_SNP [dm6]	C	G	1.017e^-4	0.71	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl
3L	6472127	3L_6472127_SNP [dm3] 3L_6479027_SNP [dm6]	T	C	1.022e^-4	0.71	INTRON CG42747
2L	7100403	2L_7100403_SNP [dm3] 2L_7100403_SNP [dm6]	G	A	1.027e^-4	0.71	SYNONYMOUS_CODING Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	20194195	X_20194195_SNP [dm3] X_20323168_SNP [dm6]	C	A	1.031e^-4	0.71	INTRON CG1504
3L	11864433	3L_11864433_SNP [dm3] 3L_11871333_SNP [dm6]	G	A	1.035e^-4	0.71	UPSTREAM CG5906 INTRON CG44837
3L	5649133	3L_5649133_SNP [dm3] 3L_5656033_SNP [dm6]	G	T	1.037e^-4	0.71	INTRON lin-28	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15323193	3R_15323193_SNP [dm3] 3R_19497471_SNP [dm6]	C	A	1.042e^-4	0.71	INTRON Dys
2R	15945513	2R_15945513_SNP [dm3] 2R_20058008_SNP [dm6]	C	T	1.042e^-4	0.71	UPSTREAM CR44631 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
2L	21078271	2L_21078271_SNP [dm3] 2L_21078271_SNP [dm6]	C	A	1.048e^-4	0.71	NON_SYNONYMOUS_CODING tadr SPLICE_SITE_REGION tadr	insulator Insulator_Class_II.mE01
3L	20889568	3L_20889568_SNP [dm3] 3L_20896468_SNP [dm6]	C	T	1.048e^-4	0.71	UTR_3_PRIME Sfp77F DOWNSTREAM Sfp77F
2R	7568244	2R_7568244_SNP [dm3] 2R_11680739_SNP [dm6]	T	A	1.049e^-4	0.71	INTRON Buffy
3L	2171477	3L_2171477_SNP [dm3] 3L_2171477_SNP [dm6]	A	C	1.052e^-4	0.71	UPSTREAM CG5704 DOWNSTREAM CR15821 INTERGENIC
3R	23199096	3R_23199096_SNP [dm3] 3R_27373374_SNP [dm6]	T	A	1.054e^-4	0.71	DOWNSTREAM CG42534 INTERGENIC
2L	3015698	2L_3015698_SNP [dm3] 2L_3015698_SNP [dm6]	T	A	1.058e^-4	0.71	UTR_3_PRIME CG17265 DOWNSTREAM CG17224	TF binding site BDTNP1_TFBS_twi
3L	6472008	3L_6472008_SNP [dm3] 3L_6478908_SNP [dm6]	A	C	1.061e^-4	0.71	INTRON CG42747
2R	19905419	2R_19905419_SNP [dm3] 2R_24017896_SNP [dm6]	T	C	1.063e^-4	0.71	SPLICE_SITE_REGION CG3121 UPSTREAM CG4324 INTRON CG3121	TF binding site BDTNP1_TFBS_twi
3L	2645997	3L_2645997_SNP [dm3] 3L_2645997_SNP [dm6]	G	T	1.067e^-4	0.71	NON_SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6563273	2R_6563273_INS [dm3] 2R_10675768_INS [dm6]	C	CCTT	1.076e^-4	0.71	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13279323	3R_13279323_DEL [dm3] 3R_17453601_DEL [dm6]	CCATCCCCTCCCATCCTTCT...	C	1.090e^-4	0.71	INTERGENIC
2R	8987454	2R_8987454_SNP [dm3] 2R_13099949_SNP [dm6]	A	C	1.099e^-4	0.71	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	11330161	2R_11330161_SNP [dm3] 2R_15442656_SNP [dm6]	G	A	1.102e^-4	0.71	INTRON CG43729
2L	10068879	2L_10068879_SNP [dm3] 2L_10068879_SNP [dm6]	G	C	1.107e^-4	0.71	NON_SYNONYMOUS_CODING CG44153	TF binding site BDTNP1_TFBS_sna
3L	2651890	3L_2651890_SNP [dm3] 3L_2651890_SNP [dm6]	C	A	1.107e^-4	0.71	UPSTREAM Snup & 2 others INTERGENIC
3L	10951763	3L_10951763_SNP [dm3] 3L_10958663_SNP [dm6]	G	C	1.111e^-4	0.71	UPSTREAM CR45248 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	4097550	3R_4097550_INS [dm3] 3R_8271828_INS [dm6]	G	GATCATGAAACTG...	1.113e^-4	0.71	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
2R	18475339	2R_18475339_SNP [dm3] 2R_22587834_SNP [dm6]	A	C	1.118e^-4	0.71	INTRON dnr1
2R	18475340	2R_18475340_SNP [dm3] 2R_22587835_SNP [dm6]	G	A	1.118e^-4	0.71	INTRON dnr1
2R	19397731	2R_19397731_SNP [dm3] 2R_23510208_SNP [dm6]	G	A	1.124e^-4	0.71	INTERGENIC
2R	7076783	2R_7076783_SNP [dm3] 2R_11189278_SNP [dm6]	C	T	1.126e^-4	0.71	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6472044	3L_6472044_SNP [dm3] 3L_6478944_SNP [dm6]	G	T	1.128e^-4	0.71	INTRON CG42747
2L	7613237	2L_7613237_SNP [dm3] 2L_7613237_SNP [dm6]	T	C	1.132e^-4	0.71	INTRON CG6739
3R	4030888	3R_4030888_SNP [dm3] 3R_8205166_SNP [dm6]	A	G	1.136e^-4	0.71	UPSTREAM CheA84a INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19796112	2L_19796112_SNP [dm3] 2L_19796112_SNP [dm6]	T	A	1.137e^-4	0.71	UPSTREAM sick & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3L	10679775	3L_10679775_SNP [dm3] 3L_10686675_SNP [dm6]	T	C	1.144e^-4	0.71	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20005947	3R_20005947_SNP [dm3] 3R_24180225_SNP [dm6]	G	C	1.146e^-4	0.71	INTRON CG13606	TF binding site mE1_TFBS_chinmo
3L	6254094	3L_6254094_SNP [dm3] 3L_6260994_SNP [dm6]	C	T	1.147e^-4	0.71	UTR_5_PRIME ImpL3 INTRON ImpL3
3L	5234983	3L_5234983_SNP [dm3] 3L_5241883_SNP [dm6]	T	A	1.155e^-4	0.71	INTRON shep
2L	19903746	2L_19903746_SNP [dm3] 2L_19903746_SNP [dm6]	A	G	1.156e^-4	0.71	INTRON sick
3R	21405190	3R_21405190_SNP [dm3] 3R_25579468_SNP [dm6]	A	G	1.158e^-4	0.71	INTRON msi
2R	12550153	2R_12550153_SNP [dm3] 2R_16662648_SNP [dm6]	T	G	1.158e^-4	0.71	INTRON Picot
X	10413834	X_10413834_SNP [dm3] X_10519801_SNP [dm6]	A	G	1.160e^-4	0.71	INTRON spri
3L	2649427	3L_2649427_SNP [dm3] 3L_2649427_SNP [dm6]	C	A	1.167e^-4	0.71	SYNONYMOUS_CODING CG1246 DOWNSTREAM Aats-pro
X	12718574	X_12718574_SNP [dm3] X_12824541_SNP [dm6]	G	C	1.168e^-4	0.71	INTRON Pde9
2R	19719423	2R_19719423_SNP [dm3] 2R_23831900_SNP [dm6]	A	G	1.177e^-4	0.71	INTRON CG5549
3L	5979581	3L_5979581_SNP [dm3] 3L_5986481_SNP [dm6]	C	A	1.179e^-4	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	9138301	2R_9138301_SNP [dm3] 2R_13250796_SNP [dm6]	A	T	1.185e^-4	0.71	NON_SYNONYMOUS_CODING CG4712
3L	12023899	3L_12023899_SNP [dm3] 3L_12030799_SNP [dm6]	T	A	1.187e^-4	0.71	INTRON rols	TF binding site mE1_TFBS_cad
2R	19024797	2R_19024797_SNP [dm3] 2R_23137274_SNP [dm6]	C	T	1.190e^-4	0.71	INTERGENIC
2L	6700962	2L_6700962_SNP [dm3] 2L_6700962_SNP [dm6]	C	A	1.191e^-4	0.71	INTRON Tsp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13950559	2R_13950559_SNP [dm3] 2R_18063054_SNP [dm6]	A	T	1.192e^-4	0.71	INTRON CG34386
3L	11297340	3L_11297340_SNP [dm3] 3L_11304240_SNP [dm6]	G	T	1.195e^-4	0.71	INTERGENIC
3L	22934486	3L_22934486_SNP [dm3] 3L_22941386_SNP [dm6]	T	A	1.196e^-4	0.71	INTERGENIC
3R	4097571	3R_4097571_SNP [dm3] 3R_8271849_SNP [dm6]	T	C	1.196e^-4	0.71	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3R	19952709	3R_19952709_SNP [dm3] 3R_24126987_SNP [dm6]	T	C	1.198e^-4	0.71	SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad
3R	15318394	3R_15318394_SNP [dm3] 3R_19492672_SNP [dm6]	A	T	1.198e^-4	0.71	INTRON Dys
3L	2507311	3L_2507311_SNP [dm3] 3L_2507311_SNP [dm6]	A	G	1.209e^-4	0.71	UTR_3_PRIME Spn DOWNSTREAM Spn
2R	12177780	2R_12177780_SNP [dm3] 2R_16290275_SNP [dm6]	C	T	1.210e^-4	0.71	SYNONYMOUS_CODING JhI-26 EXON CR43730
3R	24492285	3R_24492285_SNP [dm3] 3R_28666563_SNP [dm6]	A	G	1.216e^-4	0.71	INTERGENIC
3R	5185243	3R_5185243_SNP [dm3] 3R_9359521_SNP [dm6]	T	C	1.219e^-4	0.71	UTR_3_PRIME CG45050 DOWNSTREAM CG45050 & 1 other
2R	13506075	2R_13506075_SNP [dm3] 2R_17618570_SNP [dm6]	T	G	1.231e^-4	0.71	UPSTREAM CG44403 INTRON CG10936
3R	15318363	3R_15318363_SNP [dm3] 3R_19492641_SNP [dm6]	C	T	1.233e^-4	0.71	INTRON Dys
2L	7100263	2L_7100263_SNP [dm3] 2L_7100263_SNP [dm6]	T	A	1.237e^-4	0.71	INTRON Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	10998617	2R_10998617_SNP [dm3] 2R_15111112_SNP [dm6]	C	T	1.238e^-4	0.71	INTERGENIC
3L	8966552	3L_8966552_SNP [dm3] 3L_8973452_SNP [dm6]	T	A	1.241e^-4	0.71	INTRON pix	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8966553	3L_8966553_SNP [dm3] 3L_8973453_SNP [dm6]	C	T	1.241e^-4	0.71	SPLICE_SITE_REGION pix INTRON pix	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15325922	3R_15325922_INS [dm3] 3R_19500200_INS [dm6]	A	AGATTCTTCTTAAA...	1.244e^-4	0.71	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7375633	3L_7375633_SNP [dm3] 3L_7382533_SNP [dm6]	C	T	1.245e^-4	0.71	SYNONYMOUS_CODING smid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	2643063	3L_2643063_SNP [dm3] 3L_2643063_SNP [dm6]	A	G	1.246e^-4	0.71	INTRON CG14949
2R	6561118	2R_6561118_SNP [dm3] 2R_10673613_SNP [dm6]	T	A	1.256e^-4	0.71	UTR_5_PRIME stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA
2R	15945542	2R_15945542_SNP [dm3] 2R_20058037_SNP [dm6]	A	G	1.261e^-4	0.71	UPSTREAM CR44631 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
3L	12846891	3L_12846891_SNP [dm3] 3L_12853791_SNP [dm6]	T	C	1.262e^-4	0.71	UTR_5_PRIME Ent3 DOWNSTREAM Wbp2
2L	5238981	2L_5238981_SNP [dm3] 2L_5238981_SNP [dm6]	A	T	1.265e^-4	0.71	INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	13113697	3L_13113697_SNP [dm3] 3L_13120597_SNP [dm6]	T	C	1.266e^-4	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	12364673	3R_12364673_SNP [dm3] 3R_16538951_SNP [dm6]	C	G	1.267e^-4	0.71	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_h mE1_TFBS_HSA
3L	15355850	3L_15355850_SNP [dm3] 3L_15362750_SNP [dm6]	G	A	1.271e^-4	0.71	INTERGENIC
X	15567690	X_15567690_SNP [dm3] X_15673657_SNP [dm6]	T	A	1.273e^-4	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	10998554	2R_10998554_INS [dm3] 2R_15111049_INS [dm6]	A	ACCATAAGAACCACTAATGG...	1.277e^-4	0.71	INTERGENIC
3R	5360924	3R_5360924_DEL [dm3] 3R_9535202_DEL [dm6]	AA	A	1.282e^-4	0.71	DOWNSTREAM mura INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	12457959	2R_12457959_SNP [dm3] 2R_16570454_SNP [dm6]	T	C	1.282e^-4	0.71	DOWNSTREAM CG4945 INTRON RpS15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15741827	3L_15741827_SNP [dm3] 3L_15748727_SNP [dm6]	T	C	1.282e^-4	0.71	DOWNSTREAM CR45240 INTERGENIC
3R	15326734	3R_15326734_SNP [dm3] 3R_19501012_SNP [dm6]	C	A	1.284e^-4	0.71	INTRON Dys
3R	15323209	3R_15323209_SNP [dm3] 3R_19497487_SNP [dm6]	T	C	1.286e^-4	0.71	INTRON Dys
X	3912551	X_3912551_DEL [dm3] X_4018518_DEL [dm6]	AGCTGACCTGTCCGGGA...	A	1.289e^-4	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_Med
2R	9131489	2R_9131489_SNP [dm3] 2R_13243984_SNP [dm6]	G	T	1.294e^-4	0.71	DOWNSTREAM CR45278 INTERGENIC
3L	22909928	3L_22909928_SNP [dm3] 3L_22916828_SNP [dm6]	T	C	1.298e^-4	0.71	INTRON CG12768
2R	6561778	2R_6561778_INS [dm3] 2R_10674273_INS [dm6]	G	GGG	1.299e^-4	0.71	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19905502	2R_19905502_SNP [dm3] 2R_24017979_SNP [dm6]	T	C	1.300e^-4	0.71	SYNONYMOUS_CODING CG3121 UPSTREAM CG4324	TF binding site BDTNP1_TFBS_twi
X	10501789	X_10501789_SNP [dm3] X_10607756_SNP [dm6]	A	C	1.300e^-4	0.71	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2480256	3L_2480256_SNP [dm3] 3L_2480256_SNP [dm6]	G	A	1.300e^-4	0.71	INTRON CG45186	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6827312	2R_6827312_SNP [dm3] 2R_10939807_SNP [dm6]	C	G	1.315e^-4	0.71	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
3R	4596929	3R_4596929_SNP [dm3] 3R_8771207_SNP [dm6]	T	C	1.316e^-4	0.71	DOWNSTREAM CG13318 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	14207875	2R_14207875_SNP [dm3] 2R_18320370_SNP [dm6]	A	G	1.316e^-4	0.71	INTRON sbb
3L	3869726	3L_3869726_SNP [dm3] 3L_3869726_SNP [dm6]	T	G	1.323e^-4	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12821128	2R_12821128_SNP [dm3] 2R_16933623_SNP [dm6]	T	C	1.324e^-4	0.71	INTRON Pkc53E	TF binding site BDTNP1_TFBS_twi
2L	4307167	2L_4307167_SNP [dm3] 2L_4307167_SNP [dm6]	C	G	1.326e^-4	0.71	INTRON tutl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2204247	3L_2204247_SNP [dm3] 3L_2204247_SNP [dm6]	T	C	1.330e^-4	0.71	INTERGENIC
3R	15323178	3R_15323178_SNP [dm3] 3R_19497456_SNP [dm6]	A	T	1.330e^-4	0.71	INTRON Dys
3L	6172649	3L_6172649_SNP [dm3] 3L_6179549_SNP [dm6]	G	A	1.335e^-4	0.71	SYNONYMOUS_CODING CG10274 DOWNSTREAM CG7376	TF binding site BDTNP1_TFBS_twi
3L	14142384	3L_14142384_SNP [dm3] 3L_14149284_SNP [dm6]	T	A	1.337e^-4	0.71	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6784186	2R_6784186_SNP [dm3] 2R_10896681_SNP [dm6]	C	A	1.341e^-4	0.71	DOWNSTREAM CG7712 INTRON CG12942	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10877280	3L_10877280_SNP [dm3] 3L_10884180_SNP [dm6]	C	G	1.345e^-4	0.71	DOWNSTREAM CG6404 & 1 other INTERGENIC
3R	15894165	3R_15894165_SNP [dm3] 3R_20068443_SNP [dm6]	G	A	1.352e^-4	0.71	INTERGENIC
3R	4596938	3R_4596938_SNP [dm3] 3R_8771216_SNP [dm6]	A	T	1.362e^-4	0.71	DOWNSTREAM CG13318 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	12923423	2L_12923423_SNP [dm3] 2L_12923423_SNP [dm6]	T	G	1.365e^-4	0.71	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
2R	8133308	2R_8133308_INS [dm3] 2R_12245803_INS [dm6]	A	AA	1.366e^-4	0.71	DOWNSTREAM CR44315 INTERGENIC
X	10505341	X_10505341_SNP [dm3] X_10611308_SNP [dm6]	C	T	1.374e^-4	0.71	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11649612	3L_11649612_SNP [dm3] 3L_11656512_SNP [dm6]	C	T	1.376e^-4	0.71	UPSTREAM mir-274 INTRON CG32085
2R	16837257	2R_16837257_SNP [dm3] 2R_20949752_SNP [dm6]	C	T	1.378e^-4	0.71	UPSTREAM CG33704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	3354928	3L_3354928_SNP [dm3] 3L_3354928_SNP [dm6]	G	T	1.386e^-4	0.71	INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	15733591	2R_15733591_SNP [dm3] 2R_19846086_SNP [dm6]	C	A	1.388e^-4	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	2507287	3L_2507287_SNP [dm3] 3L_2507287_SNP [dm6]	C	T	1.388e^-4	0.71	UTR_3_PRIME Spn DOWNSTREAM Spn
2L	15190205	2L_15190205_SNP [dm3] 2L_15190205_SNP [dm6]	T	C	1.401e^-4	0.71	INTRON CG4168
3R	4596912	3R_4596912_MNP [dm3] 3R_8771190_MNP [dm6]	CGTTTTAAA	GAAGGACTT	1.402e^-4	0.71	DOWNSTREAM CG13318 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	10623927	3R_10623927_SNP [dm3] 3R_14798205_SNP [dm6]	T	C	1.410e^-4	0.71	SYNONYMOUS_CODING CG14855 UPSTREAM CG14856
2L	14893771	2L_14893771_SNP [dm3] 2L_14893771_SNP [dm6]	G	T	1.411e^-4	0.71	INTERGENIC
3R	15262535	3R_15262535_SNP [dm3] 3R_19436813_SNP [dm6]	A	C	1.411e^-4	0.71	INTRON CG31221
3L	6254145	3L_6254145_SNP [dm3] 3L_6261045_SNP [dm6]	C	A	1.414e^-4	0.71	UPSTREAM ImpL3 INTRON ImpL3
3L	6472019	3L_6472019_SNP [dm3] 3L_6478919_SNP [dm6]	T	A	1.416e^-4	0.71	INTRON CG42747
X	15567686	X_15567686_SNP [dm3] X_15673653_SNP [dm6]	A	C	1.421e^-4	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	21310145	2L_21310145_SNP [dm3] 2L_21310145_SNP [dm6]	A	T	1.426e^-4	0.71	UPSTREAM Mio & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	10950980	3L_10950980_DEL [dm3] 3L_10957880_DEL [dm6]	TT	T	1.440e^-4	0.71	INTERGENIC
3L	3574129	3L_3574129_SNP [dm3] 3L_3574129_SNP [dm6]	C	T	1.441e^-4	0.71	INTRON Eip63E
3L	6253710	3L_6253710_SNP [dm3] 3L_6260610_SNP [dm6]	C	T	1.445e^-4	0.71	SYNONYMOUS_CODING ImpL3
X	18979116	X_18979116_SNP [dm3] X_19085083_SNP [dm6]	G	T	1.446e^-4	0.71	INTERGENIC
3L	2171436	3L_2171436_SNP [dm3] 3L_2171436_SNP [dm6]	C	T	1.447e^-4	0.71	UPSTREAM CG5704 DOWNSTREAM CR15821 INTERGENIC
3L	6253803	3L_6253803_SNP [dm3] 3L_6260703_SNP [dm6]	G	A	1.449e^-4	0.71	SYNONYMOUS_CODING ImpL3
3R	4350226	3R_4350226_SNP [dm3] 3R_8524504_SNP [dm6]	C	T	1.452e^-4	0.71	SYNONYMOUS_CODING CG31259 DOWNSTREAM CG31454
3R	16890254	3R_16890254_SNP [dm3] 3R_21064532_SNP [dm6]	A	C	1.453e^-4	0.71	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3L	14551078	3L_14551078_SNP [dm3] 3L_14557978_SNP [dm6]	C	T	1.457e^-4	0.71	INTERGENIC
3L	8652332	3L_8652332_SNP [dm3] 3L_8659232_SNP [dm6]	T	C	1.462e^-4	0.71	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5734725	3L_5734725_SNP [dm3] 3L_5741625_SNP [dm6]	A	G	1.464e^-4	0.71	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_chinmo
X	8246285	X_8246285_SNP [dm3] X_8352252_SNP [dm6]	A	G	1.464e^-4	0.71	INTRON nAChRalpha3
2R	14932148	2R_14932148_DEL [dm3] 2R_19044643_DEL [dm6]	AA	A	1.468e^-4	0.71	INTERGENIC
X	5721295	X_5721295_SNP [dm3] X_5827262_SNP [dm6]	G	T	1.468e^-4	0.71	INTRON CG15765
2R	19286160	2R_19286160_SNP [dm3] 2R_23398637_SNP [dm6]	A	G	1.470e^-4	0.71	SYNONYMOUS_CODING CG3520	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5611182	3L_5611182_SNP [dm3] 3L_5618082_SNP [dm6]	G	T	1.474e^-4	0.71	INTERGENIC
3R	15323196	3R_15323196_SNP [dm3] 3R_19497474_SNP [dm6]	A	T	1.476e^-4	0.71	INTRON Dys
X	5850037	X_5850037_SNP [dm3] X_5956004_SNP [dm6]	G	A	1.478e^-4	0.71	INTRON CG6067
3L	2403973	3L_2403973_SNP [dm3] 3L_2403973_SNP [dm6]	G	A	1.492e^-4	0.715	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6189761	3R_6189761_SNP [dm3] 3R_10364039_SNP [dm6]	G	A	1.500e^-4	0.717	SYNONYMOUS_CODING Rfx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21425426	3R_21425426_SNP [dm3] 3R_25599704_SNP [dm6]	T	C	1.509e^-4	0.717	SYNONYMOUS_CODING msi INTRON ymp	TF binding site mE1_TFBS_cad
2L	18914229	2L_18914229_SNP [dm3] 2L_18914229_SNP [dm6]	G	A	1.510e^-4	0.717	INTERGENIC
3R	8666856	3R_8666856_SNP [dm3] 3R_12841134_SNP [dm6]	G	T	1.511e^-4	0.717	UTR_3_PRIME beat-Va DOWNSTREAM beat-Va
3L	10916931	3L_10916931_SNP [dm3] 3L_10923831_SNP [dm6]	G	A	1.514e^-4	0.717	INTERGENIC
X	16341636	X_16341636_DEL [dm3] X_16447603_DEL [dm6]	TGACAGCGCGCGAGTACAA...	T	1.519e^-4	0.717	UTR_3_PRIME CG34015 UPSTREAM eIF-2alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9077187	2R_9077187_SNP [dm3] 2R_13189682_SNP [dm6]	C	A	1.529e^-4	0.72	UTR_5_PRIME Kdm4B & 2 others UPSTREAM Kdm4B INTRON Kdm4B	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2L	21310620	2L_21310620_SNP [dm3] 2L_21310620_SNP [dm6]	T	A	1.534e^-4	0.72	UPSTREAM crc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	19515250	X_19515250_SNP [dm3] X_19621217_SNP [dm6]	T	G	1.540e^-4	0.72	UTR_5_PRIME CG14221 UPSTREAM CG14221 DOWNSTREAM NAA20	TF binding site mE1_TFBS_cad
3R	10611065	3R_10611065_SNP [dm3] 3R_14785343_SNP [dm6]	T	C	1.543e^-4	0.72	UTR_5_PRIME jvl INTRON jvl
3L	1707891	3L_1707891_SNP [dm3] 3L_1707891_SNP [dm6]	G	C	1.553e^-4	0.72	INTRON CG7991
3R	21405169	3R_21405169_SNP [dm3] 3R_25579447_SNP [dm6]	C	T	1.554e^-4	0.72	INTRON msi
3L	10916941	3L_10916941_SNP [dm3] 3L_10923841_SNP [dm6]	A	G	1.559e^-4	0.72	INTERGENIC
X	12798502	X_12798502_SNP [dm3] X_12904469_SNP [dm6]	C	T	1.568e^-4	0.72	SYNONYMOUS_CODING CG4404 UPSTREAM CG4407	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13600203	3R_13600203_SNP [dm3] 3R_17774481_SNP [dm6]	C	T	1.572e^-4	0.72	UTR_5_PRIME CG43102 INTRON CG43102
3R	13600449	3R_13600449_SNP [dm3] 3R_17774727_SNP [dm6]	C	T	1.572e^-4	0.72	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl
2R	7567728	2R_7567728_DEL [dm3] 2R_11680223_DEL [dm6]	AT	A	1.573e^-4	0.72	UPSTREAM Roc2 INTRON Buffy	TF binding site mE1_TFBS_inv
X	11214347	X_11214347_SNP [dm3] X_11320314_SNP [dm6]	G	C	1.576e^-4	0.72	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	14835412	3L_14835412_SNP [dm3] 3L_14842312_SNP [dm6]	C	A	1.577e^-4	0.72	INTRON CG17839
X	13191749	X_13191749_SNP [dm3] X_13297716_SNP [dm6]	C	T	1.578e^-4	0.72	INTRON CG1764 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	6827523	2R_6827523_SNP [dm3] 2R_10940018_SNP [dm6]	T	C	1.586e^-4	0.721	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
3L	11865731	3L_11865731_MNP [dm3] 3L_11872631_MNP [dm6]	GTT	AAA	1.593e^-4	0.721	INTRON CG44837
3L	2313009	3L_2313009_SNP [dm3] 3L_2313009_SNP [dm6]	G	T	1.594e^-4	0.721	INTERGENIC
X	1194700	X_1194700_SNP [dm3] X_1300667_SNP [dm6]	C	T	1.608e^-4	0.721	INTRON DAAM
2R	20595942	2R_20595942_SNP [dm3] 2R_24708419_SNP [dm6]	G	A	1.613e^-4	0.721	INTRON Mid1	TF binding site mE1_TFBS_chinmo
2L	13610291	2L_13610291_SNP [dm3] 2L_13610291_SNP [dm6]	C	T	1.617e^-4	0.721	NON_SYNONYMOUS_CODING kuz DOWNSTREAM mir-2489
X	17584525	X_17584525_SNP [dm3] X_17690492_SNP [dm6]	C	T	1.621e^-4	0.721	INTRON chas
3R	12317545	3R_12317545_SNP [dm3] 3R_16491823_SNP [dm6]	G	A	1.635e^-4	0.721	INTRON Cad89D
3L	1294411	3L_1294411_SNP [dm3] 3L_1294411_SNP [dm6]	T	A	1.639e^-4	0.721	UTR_3_PRIME CG32333 DOWNSTREAM CG32333
2L	5270528	2L_5270528_SNP [dm3] 2L_5270528_SNP [dm6]	A	G	1.640e^-4	0.721	DOWNSTREAM Cyp4ac3 INTRON tkv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	2313350	3L_2313350_SNP [dm3] 3L_2313350_SNP [dm6]	G	A	1.642e^-4	0.721	INTERGENIC
2R	6805919	2R_6805919_SNP [dm3] 2R_10918414_SNP [dm6]	G	A	1.642e^-4	0.721	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	5979576	3L_5979576_INS [dm3] 3L_5986476_INS [dm6]	C	CG	1.645e^-4	0.721	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	5121948	3R_5121948_SNP [dm3] 3R_9296226_SNP [dm6]	C	A	1.645e^-4	0.721	INTRON CG8861
3L	20704905	3L_20704905_SNP [dm3] 3L_20711805_SNP [dm6]	T	G	1.646e^-4	0.721	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	15196056	3R_15196056_SNP [dm3] 3R_19370334_SNP [dm6]	A	G	1.646e^-4	0.721	INTRON Ino80
2L	4946588	2L_4946588_SNP [dm3] 2L_4946588_SNP [dm6]	C	T	1.649e^-4	0.721	INTRON betaggt-I
3L	742917	3L_742917_SNP [dm3] 3L_742917_SNP [dm6]	G	T	1.652e^-4	0.721	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	19549641	2R_19549641_SNP [dm3] 2R_23662118_SNP [dm6]	T	C	1.654e^-4	0.721	INTRON Pde8	TF binding site BDTNP1_TFBS_dl
2L	21013812	2L_21013812_DEL [dm3] 2L_21013812_DEL [dm6]	TTTAATTT	T	1.682e^-4	0.727	INTRON CG42238
2L	8590040	2L_8590040_SNP [dm3] 2L_8590040_SNP [dm6]	T	A	1.682e^-4	0.727	DOWNSTREAM CR43855 INTRON Sema-1a	TF binding site mE1_TFBS_kn
2R	12543589	2R_12543589_SNP [dm3] 2R_16656084_SNP [dm6]	A	G	1.683e^-4	0.727	SYNONYMOUS_CODING Picot	TF binding site mE1_TFBS_cad
X	12709389	X_12709389_SNP [dm3] X_12815356_SNP [dm6]	C	G	1.693e^-4	0.727	INTRON Pde9
3L	8151400	3L_8151400_SNP [dm3] 3L_8158300_SNP [dm6]	A	T	1.702e^-4	0.727	INTRON CG42445
2R	6827530	2R_6827530_SNP [dm3] 2R_10940025_SNP [dm6]	C	T	1.702e^-4	0.727	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
3L	4862413	3L_4862413_SNP [dm3] 3L_4862413_SNP [dm6]	C	G	1.704e^-4	0.727	INTRON CG17150	TF binding site mE1_TFBS_chinmo
3L	2647414	3L_2647414_SNP [dm3] 3L_2647414_SNP [dm6]	A	G	1.711e^-4	0.727	UPSTREAM CG1246 DOWNSTREAM CG1143 INTERGENIC
X	1191641	X_1191641_SNP [dm3] X_1297608_SNP [dm6]	C	A	1.716e^-4	0.727	DOWNSTREAM CG32811 INTRON DAAM	TF binding site mE1_TFBS_chinmo
3R	23199080	3R_23199080_SNP [dm3] 3R_27373358_SNP [dm6]	C	T	1.720e^-4	0.727	DOWNSTREAM CG42534 INTERGENIC
2R	17761515	2R_17761515_SNP [dm3] 2R_21874010_SNP [dm6]	C	G	1.720e^-4	0.727	INTRON Fili	TF binding site BDTNP1_TFBS_da mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	14874054	3R_14874054_SNP [dm3] 3R_19048332_SNP [dm6]	G	T	1.721e^-4	0.727	SYNONYMOUS_CODING cdi
3L	7374489	3L_7374489_SNP [dm3] 3L_7381389_SNP [dm6]	A	T	1.728e^-4	0.727	UTR_5_PRIME SMSr UPSTREAM smid	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	13600157	3R_13600157_SNP [dm3] 3R_17774435_SNP [dm6]	T	G	1.737e^-4	0.727	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
2L	4618603	2L_4618603_SNP [dm3] 2L_4618603_SNP [dm6]	C	T	1.739e^-4	0.727	UPSTREAM CR44609 INTERGENIC	TF binding site mE1_TFBS_cad
2R	15945512	2R_15945512_SNP [dm3] 2R_20058007_SNP [dm6]	G	T	1.742e^-4	0.727	UPSTREAM CR44631 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
X	4860898	X_4860898_SNP [dm3] X_4966865_SNP [dm6]	T	C	1.746e^-4	0.727	INTRON CR44833	regulatory region REDfly_CRMs
2L	4946574	2L_4946574_SNP [dm3] 2L_4946574_SNP [dm6]	C	T	1.748e^-4	0.727	INTRON betaggt-I
2L	18753650	2L_18753650_SNP [dm3] 2L_18753650_SNP [dm6]	A	T	1.749e^-4	0.727	INTERGENIC
3L	7466189	3L_7466189_SNP [dm3] 3L_7473089_SNP [dm6]	T	A	1.760e^-4	0.727	DOWNSTREAM CG8541 INTERGENIC
X	4625184	X_4625184_SNP [dm3] X_4731151_SNP [dm6]	T	C	1.765e^-4	0.727	INTERGENIC
2L	4946430	2L_4946430_DEL [dm3] 2L_4946430_DEL [dm6]	AGAAGCATCCACGA...	A	1.765e^-4	0.727	INTRON betaggt-I
2R	14693662	2R_14693662_SNP [dm3] 2R_18806157_SNP [dm6]	G	C	1.767e^-4	0.727	INTRON CR44468 EXON CR44468	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6218645	3R_6218645_SNP [dm3] 3R_10392923_SNP [dm6]	A	G	1.777e^-4	0.727	INTRON cwo
3L	2656765	3L_2656765_SNP [dm3] 3L_2656765_SNP [dm6]	G	A	1.778e^-4	0.727	UTR_3_PRIME Fife
3R	5963561	3R_5963561_SNP [dm3] 3R_10137839_SNP [dm6]	T	C	1.779e^-4	0.727	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	21603205	3R_21603205_SNP [dm3] 3R_25777483_SNP [dm6]	A	G	1.788e^-4	0.727	SYNONYMOUS_CODING CG4956 UPSTREAM CG17195
2R	10998553	2R_10998553_SNP [dm3] 2R_15111048_SNP [dm6]	C	T	1.791e^-4	0.727	INTERGENIC
3R	4363255	3R_4363255_SNP [dm3] 3R_8537533_SNP [dm6]	A	G	1.791e^-4	0.727	INTERGENIC
3L	8548292	3L_8548292_SNP [dm3] 3L_8555192_SNP [dm6]	A	G	1.793e^-4	0.727	INTRON rhea	TF binding site BDTNP1_TFBS_twi
X	6767045	X_6767045_INS [dm3] X_6873012_INS [dm6]	A	ATAA	1.799e^-4	0.727	INTRON CG43736	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20889947	2R_20889947_SNP [dm3] 2R_25002424_SNP [dm6]	A	G	1.801e^-4	0.727	SYNONYMOUS_CODING zip
3R	4073635	3R_4073635_SNP [dm3] 3R_8247913_SNP [dm6]	G	T	1.805e^-4	0.727	UPSTREAM CG15864 DOWNSTREAM CG33722 & 1 other INTRON CG33722 & 1 other	TF binding site mE1_TFBS_HSA
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	1.811e^-4	0.727	INTRON dnc
2L	11426152	2L_11426152_DEL [dm3] 2L_11426152_DEL [dm6]	TT	T	1.814e^-4	0.727	INTERGENIC
X	20403448	X_20403448_SNP [dm3] X_20532421_SNP [dm6]	C	T	1.819e^-4	0.727	INTERGENIC
2R	12544954	2R_12544954_SNP [dm3] 2R_16657449_SNP [dm6]	G	C	1.833e^-4	0.727	INTRON Picot
3L	2654800	3L_2654800_SNP [dm3] 3L_2654800_SNP [dm6]	G	A	1.838e^-4	0.727	SYNONYMOUS_CODING CG42304 UTR_3_PRIME Snup DOWNSTREAM Fife
3L	4683329	3L_4683329_SNP [dm3] 3L_4683329_SNP [dm6]	C	T	1.844e^-4	0.727	INTRON axo
3L	14357184	3L_14357184_INS [dm3] 3L_14364084_INS [dm6]	T	TCCTTTAAT	1.845e^-4	0.727	INTRON fz	TF binding site BDTNP1_TFBS_da
3L	14357199	3L_14357199_SNP [dm3] 3L_14364099_SNP [dm6]	C	A	1.845e^-4	0.727	INTRON fz	TF binding site BDTNP1_TFBS_da
X	11237952	X_11237952_SNP [dm3] X_11343919_SNP [dm6]	C	T	1.857e^-4	0.727	SPLICE_SITE_REGION CG34348 DOWNSTREAM CG1597 INTRON CG34348	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4613012	X_4613012_SNP [dm3] X_4718979_SNP [dm6]	T	G	1.865e^-4	0.727	INTRON Proc-R
2L	20991750	2L_20991750_SNP [dm3] 2L_20991750_SNP [dm6]	A	C	1.873e^-4	0.727	INTRON CG42238
2R	6827411	2R_6827411_SNP [dm3] 2R_10939906_SNP [dm6]	A	G	1.874e^-4	0.727	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
3R	18605986	3R_18605986_SNP [dm3] 3R_22780264_SNP [dm6]	A	G	1.880e^-4	0.727	UPSTREAM CR43654 INTRON CG7029 EXON CR43654	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21773515	3L_21773515_SNP [dm3] 3L_21780415_SNP [dm6]	C	T	1.891e^-4	0.727	INTERGENIC
3L	5234972	3L_5234972_SNP [dm3] 3L_5241872_SNP [dm6]	T	C	1.894e^-4	0.727	INTRON shep
3L	4737859	3L_4737859_SNP [dm3] 3L_4737859_SNP [dm6]	A	G	1.897e^-4	0.727	INTRON RhoGEF64C
2L	716032	2L_716032_SNP [dm3] 2L_716032_SNP [dm6]	A	T	1.898e^-4	0.727	DOWNSTREAM CR44988 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	20641191	2R_20641191_SNP [dm3] 2R_24753668_SNP [dm6]	C	A	1.915e^-4	0.727	NON_SYNONYMOUS_CODING CG30421	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9131327	2R_9131327_SNP [dm3] 2R_13243822_SNP [dm6]	G	A	1.915e^-4	0.727	DOWNSTREAM CR45278 INTERGENIC
2R	7439748	2R_7439748_SNP [dm3] 2R_11552243_SNP [dm6]	G	A	1.920e^-4	0.727	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20888450	3R_20888450_SNP [dm3] 3R_25062728_SNP [dm6]	T	C	1.925e^-4	0.727	SYNONYMOUS_CODING Unc-13-4B
3L	5489855	3L_5489855_SNP [dm3] 3L_5496755_SNP [dm6]	C	G	1.926e^-4	0.727	DOWNSTREAM blanks INTERGENIC
3L	2650183	3L_2650183_SNP [dm3] 3L_2650183_SNP [dm6]	G	C	1.926e^-4	0.727	UTR_3_PRIME CG1246 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2651521	3L_2651521_SNP [dm3] 3L_2651521_SNP [dm6]	A	C	1.926e^-4	0.727	NON_SYNONYMOUS_CODING Aats-pro UPSTREAM Snup & 1 other
3L	2652122	3L_2652122_SNP [dm3] 3L_2652122_SNP [dm6]	T	A	1.926e^-4	0.727	UTR_5_PRIME Snup & 1 other UPSTREAM Aats-pro	TF binding site mE1_TFBS_cad
3R	15193911	3R_15193911_SNP [dm3] 3R_19368189_SNP [dm6]	A	C	1.929e^-4	0.727	DOWNSTREAM Ino80 INTERGENIC
2L	10000272	2L_10000272_DEL [dm3] 2L_10000272_DEL [dm6]	GTTAAAGGTACGG...	G	1.931e^-4	0.727	CODON_DELETION SoYb INTRON CG31875
3R	7363748	3R_7363748_INS [dm3] 3R_11538026_INS [dm6]	C	CTTC	1.931e^-4	0.727	INTRON dpr4
3R	5378230	3R_5378230_DEL [dm3] 3R_9552508_DEL [dm6]	TCTT	T	1.931e^-4	0.727	UPSTREAM CR42549 & 1 other INTRON RnpS1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	13906155	3R_13906155_SNP [dm3] 3R_18080433_SNP [dm6]	C	A	1.932e^-4	0.727	UPSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	20372608	3R_20372608_SNP [dm3] 3R_24546886_SNP [dm6]	T	C	1.934e^-4	0.727	INTRON Esyt2
X	20402948	X_20402948_SNP [dm3] X_20531921_SNP [dm6]	G	A	1.935e^-4	0.727	INTERGENIC
3L	14357202	3L_14357202_SNP [dm3] 3L_14364102_SNP [dm6]	G	C	1.941e^-4	0.727	INTRON fz	TF binding site BDTNP1_TFBS_da mE1_TFBS_D
3L	14357209	3L_14357209_SNP [dm3] 3L_14364109_SNP [dm6]	T	C	1.941e^-4	0.727	INTRON fz	TF binding site BDTNP1_TFBS_da mE1_TFBS_D
3R	16867144	3R_16867144_DEL [dm3] 3R_21041422_DEL [dm6]	CAATTGTC	C	1.947e^-4	0.727	INTRON Dhc93AB	TF binding site mE1_TFBS_cad
3R	22673918	3R_22673918_SNP [dm3] 3R_26848196_SNP [dm6]	A	T	1.952e^-4	0.727	INTRON Lerp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	19508472	X_19508472_SNP [dm3] X_19614439_SNP [dm6]	C	T	1.953e^-4	0.727	SPLICE_SITE_REGION Tyler & 1 other INTRON Tyler & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6924102	2R_6924102_SNP [dm3] 2R_11036597_SNP [dm6]	C	G	1.955e^-4	0.727	INTRON luna
3L	2723340	3L_2723340_SNP [dm3] 3L_2723340_SNP [dm6]	A	G	1.955e^-4	0.727	SYNONYMOUS_CODING Mrtf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2650069	3L_2650069_SNP [dm3] 3L_2650069_SNP [dm6]	C	T	1.958e^-4	0.727	SYNONYMOUS_CODING CG1246 DOWNSTREAM Aats-pro	TF binding site mE1_TFBS_HSA
X	6734285	X_6734285_SNP [dm3] X_6840252_SNP [dm6]	A	T	1.959e^-4	0.727	UTR_3_PRIME CG14435
3L	12957149	3L_12957149_SNP [dm3] 3L_12964049_SNP [dm6]	T	G	1.962e^-4	0.727	DOWNSTREAM Or69a INTERGENIC
X	19506217	X_19506217_SNP [dm3] X_19612184_SNP [dm6]	G	C	1.962e^-4	0.727	SYNONYMOUS_CODING Tyler UTR_5_PRIME Shawn DOWNSTREAM CG14207	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4683350	3L_4683350_SNP [dm3] 3L_4683350_SNP [dm6]	A	T	1.968e^-4	0.727	INTRON axo
2R	8133682	2R_8133682_SNP [dm3] 2R_12246177_SNP [dm6]	T	A	1.970e^-4	0.727	DOWNSTREAM CR44315 INTERGENIC
2R	6560094	2R_6560094_SNP [dm3] 2R_10672589_SNP [dm6]	G	A	1.974e^-4	0.727	UPSTREAM stan INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4950263	3L_4950263_SNP [dm3] 3L_4950263_SNP [dm6]	C	T	1.990e^-4	0.732	INTRON Con	TF binding site mE1_TFBS_chinmo
3L	2683655	3L_2683655_SNP [dm3] 3L_2683655_SNP [dm6]	A	G	2.011e^-4	0.732	INTRON Fife
3L	1188468	3L_1188468_SNP [dm3] 3L_1188468_SNP [dm6]	G	A	2.016e^-4	0.732	INTERGENIC
X	20218600	X_20218600_SNP [dm3] X_20347573_SNP [dm6]	T	A	2.022e^-4	0.732	INTERGENIC
3R	18926756	3R_18926756_SNP [dm3] 3R_23101034_SNP [dm6]	G	A	2.023e^-4	0.732	DOWNSTREAM CG6738 INTRON CG13830
3R	21730724	3R_21730724_SNP [dm3] 3R_25905002_SNP [dm6]	G	A	2.024e^-4	0.732	DOWNSTREAM CG31089 & 1 other INTRON CR43259
2R	6827493	2R_6827493_SNP [dm3] 2R_10939988_SNP [dm6]	C	A	2.025e^-4	0.732	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
3L	20752835	3L_20752835_SNP [dm3] 3L_20759735_SNP [dm6]	A	G	2.026e^-4	0.732	DOWNSTREAM CG43251 INTERGENIC
3L	2311237	3L_2311237_SNP [dm3] 3L_2311237_SNP [dm6]	T	C	2.040e^-4	0.732	INTERGENIC
3L	2122361	3L_2122361_SNP [dm3] 3L_2122361_SNP [dm6]	G	C	2.045e^-4	0.732	DOWNSTREAM zormin INTRON zormin
2L	19139122	2L_19139122_SNP [dm3] 2L_19139122_SNP [dm6]	C	G	2.063e^-4	0.732	INTRON brat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
3L	7375689	3L_7375689_SNP [dm3] 3L_7382589_SNP [dm6]	A	G	2.063e^-4	0.732	SYNONYMOUS_CODING smid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	12519384	3L_12519384_SNP [dm3] 3L_12526284_SNP [dm6]	G	A	2.064e^-4	0.732	SYNONYMOUS_CODING eIF-2beta DOWNSTREAM nst	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13730359	2L_13730359_SNP [dm3] 2L_13730359_SNP [dm6]	T	G	2.071e^-4	0.732	INTERGENIC
X	12861674	X_12861674_SNP [dm3] X_12967641_SNP [dm6]	G	A	2.072e^-4	0.732	UPSTREAM Mur11Da INTERGENIC
3R	15093963	3R_15093963_SNP [dm3] 3R_19268241_SNP [dm6]	T	C	2.074e^-4	0.732	INTERGENIC
3R	5085332	3R_5085332_SNP [dm3] 3R_9259610_SNP [dm6]	C	A	2.076e^-4	0.732	INTRON CG8436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2647419	3L_2647419_SNP [dm3] 3L_2647419_SNP [dm6]	A	C	2.080e^-4	0.732	UPSTREAM CG1246 DOWNSTREAM CG1143 INTERGENIC
3L	6259059	3L_6259059_SNP [dm3] 3L_6265959_SNP [dm6]	C	T	2.084e^-4	0.732	INTERGENIC
3L	22905235	3L_22905235_SNP [dm3] 3L_22912135_SNP [dm6]	G	A	2.090e^-4	0.732	SYNONYMOUS_CODING CG12768	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14343910	3R_14343910_SNP [dm3] 3R_18518188_SNP [dm6]	A	G	2.103e^-4	0.732	INTRON fru
3L	2645886	3L_2645886_SNP [dm3] 3L_2645886_SNP [dm6]	C	A	2.108e^-4	0.732	NON_SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6827563	2R_6827563_SNP [dm3] 2R_10940058_SNP [dm6]	G	T	2.111e^-4	0.732	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
3L	12899010	3L_12899010_SNP [dm3] 3L_12905910_SNP [dm6]	T	A	2.113e^-4	0.732	INTERGENIC
3R	8681879	3R_8681879_SNP [dm3] 3R_12856157_SNP [dm6]	A	G	2.118e^-4	0.732	SYNONYMOUS_CODING CG10126
3L	2654959	3L_2654959_SNP [dm3] 3L_2654959_SNP [dm6]	T	C	2.135e^-4	0.732	SYNONYMOUS_CODING CG42304 UTR_3_PRIME Snup DOWNSTREAM Fife
3L	2655211	3L_2655211_SNP [dm3] 3L_2655211_SNP [dm6]	G	A	2.135e^-4	0.732	UTR_3_PRIME Snup & 1 other DOWNSTREAM Fife
2R	9131453	2R_9131453_SNP [dm3] 2R_13243948_SNP [dm6]	A	C	2.138e^-4	0.732	DOWNSTREAM CR45278 INTERGENIC
X	4791535	X_4791535_SNP [dm3] X_4897502_SNP [dm6]	A	C	2.154e^-4	0.732	INTRON CG42594
3L	14385441	3L_14385441_SNP [dm3] 3L_14392341_SNP [dm6]	A	G	2.163e^-4	0.732	INTERGENIC
2R	12541604	2R_12541604_SNP [dm3] 2R_16654099_SNP [dm6]	T	C	2.166e^-4	0.732	NON_SYNONYMOUS_CODING Nach
3L	2618049	3L_2618049_INS [dm3] 3L_2618049_INS [dm6]	G	CA	2.166e^-4	0.732	INTRON Pxn
3L	7378389	3L_7378389_SNP [dm3] 3L_7385289_SNP [dm6]	G	A	2.167e^-4	0.732	DOWNSTREAM CG8564 INTRON smid
2R	20329276	2R_20329276_SNP [dm3] 2R_24441753_SNP [dm6]	T	A	2.172e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA
X	4730187	X_4730187_SNP [dm3] X_4836154_SNP [dm6]	C	A	2.173e^-4	0.732	INTERGENIC
3L	3354923	3L_3354923_SNP [dm3] 3L_3354923_SNP [dm6]	T	A	2.180e^-4	0.732	INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	16435589	2R_16435589_SNP [dm3] 2R_20548084_SNP [dm6]	A	G	2.185e^-4	0.732	NON_SYNONYMOUS_CODING Obp57e UPSTREAM CG30148 DOWNSTREAM Cpr57A & 1 other
X	9508220	X_9508220_DEL [dm3] X_9614187_DEL [dm6]	CGATCTTGGGGC...	C	2.193e^-4	0.732	INTRON CG42797
2R	17122056	2R_17122056_SNP [dm3] 2R_21234551_SNP [dm6]	C	T	2.213e^-4	0.732	INTRON ASPP
2R	8371515	2R_8371515_SNP [dm3] 2R_12484010_SNP [dm6]	C	T	2.215e^-4	0.732	INTRON Dh44-R2
2R	6930747	2R_6930747_SNP [dm3] 2R_11043242_SNP [dm6]	G	A	2.218e^-4	0.732	INTRON luna	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10808270	3R_10808270_SNP [dm3] 3R_14982548_SNP [dm6]	G	A	2.219e^-4	0.732	INTERGENIC
3L	20746032	3L_20746032_SNP [dm3] 3L_20752932_SNP [dm6]	T	G	2.228e^-4	0.732	INTERGENIC
3R	18610586	3R_18610586_SNP [dm3] 3R_22784864_SNP [dm6]	C	T	2.228e^-4	0.732	SYNONYMOUS_CODING CG7029 INTRON CG7029	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2650413	3L_2650413_SNP [dm3] 3L_2650413_SNP [dm6]	A	G	2.230e^-4	0.732	SYNONYMOUS_CODING Aats-pro UTR_3_PRIME Aats-pro DOWNSTREAM CG1246
3L	4307328	3L_4307328_SNP [dm3] 3L_4307328_SNP [dm6]	A	T	2.244e^-4	0.732	INTRON dyl
X	6866462	X_6866462_SNP [dm3] X_6972429_SNP [dm6]	A	C	2.247e^-4	0.732	UTR_3_PRIME CG3040 DOWNSTREAM CG4586
2L	9485629	2L_9485629_SNP [dm3] 2L_9485629_SNP [dm6]	G	A	2.248e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6933322	2R_6933322_SNP [dm3] 2R_11045817_SNP [dm6]	C	T	2.251e^-4	0.732	INTRON luna
X	1483763	X_1483763_SNP [dm3] X_1589730_SNP [dm6]	T	C	2.253e^-4	0.732	INTRON br & 1 other
2L	7100227	2L_7100227_DEL [dm3] 2L_7100227_DEL [dm6]	AGA	A	2.258e^-4	0.732	INTRON Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	3927281	3L_3927281_SNP [dm3] 3L_3927281_SNP [dm6]	G	A	2.272e^-4	0.732	INTRON Eip63F-1
3R	5362503	3R_5362503_SNP [dm3] 3R_9536781_SNP [dm6]	A	G	2.275e^-4	0.732	UTR_3_PRIME mura
3R	23055842	3R_23055842_SNP [dm3] 3R_27230120_SNP [dm6]	T	C	2.278e^-4	0.732	SYNONYMOUS_CODING CG31064 UPSTREAM CG42814 DOWNSTREAM CG31064	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19129338	2L_19129338_SNP [dm3] 2L_19129338_SNP [dm6]	A	G	2.284e^-4	0.732	DOWNSTREAM Aats-asn & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	4212374	3L_4212374_SNP [dm3] 3L_4212374_SNP [dm6]	C	G	2.286e^-4	0.732	SYNONYMOUS_CODING Cpr64Ac UPSTREAM Cpr64Ab INTRON CG43367	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15894203	3R_15894203_SNP [dm3] 3R_20068481_SNP [dm6]	A	G	2.291e^-4	0.732	INTERGENIC
3L	14383954	3L_14383954_SNP [dm3] 3L_14390854_SNP [dm6]	T	A	2.303e^-4	0.732	INTERGENIC
3R	24990864	3R_24990864_SNP [dm3] 3R_29165142_SNP [dm6]	G	A	2.303e^-4	0.732	UPSTREAM CG11898 DOWNSTREAM CG11897 INTERGENIC
3L	11236602	3L_11236602_SNP [dm3] 3L_11243502_SNP [dm6]	A	C	2.308e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6827387	2R_6827387_SNP [dm3] 2R_10939882_SNP [dm6]	T	C	2.323e^-4	0.732	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
3L	9932477	3L_9932477_SNP [dm3] 3L_9939377_SNP [dm6]	A	G	2.325e^-4	0.732	INTRON CG34356
2R	20223679	2R_20223679_SNP [dm3] 2R_24336156_SNP [dm6]	G	A	2.340e^-4	0.732	UPSTREAM CR44282 INTERGENIC
2R	6931639	2R_6931639_SNP [dm3] 2R_11044134_SNP [dm6]	T	C	2.340e^-4	0.732	INTRON luna	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16931280	3L_16931280_SNP [dm3] 3L_16938180_SNP [dm6]	T	C	2.341e^-4	0.732	DOWNSTREAM CG13022 & 1 other INTERGENIC
3L	16931287	3L_16931287_SNP [dm3] 3L_16938187_SNP [dm6]	T	A	2.341e^-4	0.732	DOWNSTREAM CG13022 & 1 other INTERGENIC
3L	12849434	3L_12849434_SNP [dm3] 3L_12856334_SNP [dm6]	T	C	2.345e^-4	0.732	SYNONYMOUS_CODING Ent3 DOWNSTREAM CG32107	TF binding site mE1_TFBS_cad
2R	16120164	2R_16120164_SNP [dm3] 2R_20232659_SNP [dm6]	T	C	2.353e^-4	0.732	UPSTREAM tRNA:G3:56EFb INTRON CG11044
3R	21425390	3R_21425390_SNP [dm3] 3R_25599668_SNP [dm6]	G	T	2.356e^-4	0.732	SYNONYMOUS_CODING msi INTRON ymp	TF binding site mE1_TFBS_cad
2R	4613332	2R_4613332_SNP [dm3] 2R_8725827_SNP [dm6]	T	C	2.368e^-4	0.732	DOWNSTREAM snoRNA:gcl-a INTRON gcl	TF binding site mE1_TFBS_Trl
2L	5239182	2L_5239182_DEL [dm3] 2L_5239182_DEL [dm6]	ACAATA	A	2.373e^-4	0.732	INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Stat92E mE1_TFBS_Trl
3R	4349280	3R_4349280_SNP [dm3] 3R_8523558_SNP [dm6]	T	C	2.375e^-4	0.732	UPSTREAM CG31259 DOWNSTREAM CG31454 INTERGENIC
2L	3832903	2L_3832903_SNP [dm3] 2L_3832903_SNP [dm6]	T	A	2.376e^-4	0.732	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
X	13041242	X_13041242_SNP [dm3] X_13147209_SNP [dm6]	A	G	2.379e^-4	0.732	INTRON CG32645
3R	15894228	3R_15894228_SNP [dm3] 3R_20068506_SNP [dm6]	A	T	2.381e^-4	0.732	INTERGENIC
3R	15894233	3R_15894233_DEL [dm3] 3R_20068511_DEL [dm6]	GCAT	G	2.381e^-4	0.732	INTERGENIC
3R	5709131	3R_5709131_SNP [dm3] 3R_9883409_SNP [dm6]	C	G	2.382e^-4	0.732	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4730181	X_4730181_SNP [dm3] X_4836148_SNP [dm6]	C	T	2.383e^-4	0.732	INTERGENIC
2L	15355720	2L_15355720_SNP [dm3] 2L_15355720_SNP [dm6]	T	G	2.391e^-4	0.732	INTERGENIC
2R	12549256	2R_12549256_SNP [dm3] 2R_16661751_SNP [dm6]	G	A	2.396e^-4	0.732	INTRON Picot
2L	15192404	2L_15192404_SNP [dm3] 2L_15192404_SNP [dm6]	G	A	2.400e^-4	0.732	INTRON CG4168
3L	13964640	3L_13964640_SNP [dm3] 3L_13971540_SNP [dm6]	T	C	2.400e^-4	0.732	SYNONYMOUS_CODING ssp2 UTR_3_PRIME Nxf3
2L	12324220	2L_12324220_SNP [dm3] 2L_12324220_SNP [dm6]	C	A	2.402e^-4	0.732	INTERGENIC
3L	10344903	3L_10344903_SNP [dm3] 3L_10351803_SNP [dm6]	C	T	2.414e^-4	0.732	INTRON CR44327
X	2926643	X_2926643_SNP [dm3] X_3032610_SNP [dm6]	C	T	2.415e^-4	0.732	INTRON kirre
X	12718677	X_12718677_SNP [dm3] X_12824644_SNP [dm6]	G	C	2.416e^-4	0.732	INTRON Pde9
3L	10004629	3L_10004629_SNP [dm3] 3L_10011529_SNP [dm6]	A	T	2.422e^-4	0.732	INTRON dpr6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21602787	3R_21602787_SNP [dm3] 3R_25777065_SNP [dm6]	G	A	2.430e^-4	0.732	SYNONYMOUS_CODING CG17195 UPSTREAM CG17196 DOWNSTREAM CG4956
2R	6559077	2R_6559077_SNP [dm3] 2R_10671572_SNP [dm6]	C	T	2.433e^-4	0.732	INTERGENIC
2L	17337872	2L_17337872_SNP [dm3] 2L_17337872_SNP [dm6]	C	A	2.441e^-4	0.732	INTERGENIC
3L	743084	3L_743084_INS [dm3] 3L_743084_INS [dm6]	T	TT	2.443e^-4	0.732	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	24855943	3R_24855943_SNP [dm3] 3R_29030221_SNP [dm6]	G	A	2.445e^-4	0.732	SYNONYMOUS_CODING CG1951 UPSTREAM CR45044 DOWNSTREAM Ssl2
2R	15597300	2R_15597300_SNP [dm3] 2R_19709795_SNP [dm6]	T	C	2.447e^-4	0.732	INTERGENIC	regulatory region REDfly_CRMs
2R	6934522	2R_6934522_SNP [dm3] 2R_11047017_SNP [dm6]	G	C	2.451e^-4	0.732	INTRON luna
3R	4375176	3R_4375176_SNP [dm3] 3R_8549454_SNP [dm6]	C	A	2.453e^-4	0.732	INTERGENIC
3L	18564762	3L_18564762_SNP [dm3] 3L_18571662_SNP [dm6]	G	T	2.457e^-4	0.732	INTRON AstC-R1
2L	17805710	2L_17805710_SNP [dm3] 2L_17805710_SNP [dm6]	G	A	2.458e^-4	0.732	INTRON CadN2
3R	15193856	3R_15193856_SNP [dm3] 3R_19368134_SNP [dm6]	G	T	2.459e^-4	0.732	DOWNSTREAM Ino80 INTERGENIC
3L	4338658	3L_4338658_SNP [dm3] 3L_4338658_SNP [dm6]	C	A	2.460e^-4	0.732	INTRON Cip4	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	19683084	2R_19683084_SNP [dm3] 2R_23795561_SNP [dm6]	T	C	2.462e^-4	0.732	INTRON CG9850
3L	5884838	3L_5884838_SNP [dm3] 3L_5891738_SNP [dm6]	C	A	2.480e^-4	0.732	INTERGENIC
2L	17810152	2L_17810152_SNP [dm3] 2L_17810152_SNP [dm6]	T	G	2.481e^-4	0.732	INTRON CadN2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19719350	2R_19719350_SNP [dm3] 2R_23831827_SNP [dm6]	T	G	2.483e^-4	0.732	INTRON CG5549
3L	10720406	3L_10720406_DEL [dm3] 3L_10727306_DEL [dm6]	ATGAGGA	A	2.494e^-4	0.732	INTERGENIC
3R	15295701	3R_15295701_SNP [dm3] 3R_19469979_SNP [dm6]	T	G	2.495e^-4	0.732	INTRON Dys
2R	18278806	2R_18278806_SNP [dm3] 2R_22391301_SNP [dm6]	A	G	2.497e^-4	0.732	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3727650	3L_3727650_SNP [dm3] 3L_3727650_SNP [dm6]	G	C	2.503e^-4	0.732	INTRON CG32264
3L	2170150	3L_2170150_SNP [dm3] 3L_2170150_SNP [dm6]	C	T	2.505e^-4	0.732	SYNONYMOUS_CODING CG5704	TF binding site mE1_TFBS_HSA
3L	21749203	3L_21749203_SNP [dm3] 3L_21756103_SNP [dm6]	C	A	2.509e^-4	0.732	INTRON Syn1	TF binding site mE1_TFBS_chinmo
3L	14135339	3L_14135339_SNP [dm3] 3L_14142239_SNP [dm6]	A	T	2.512e^-4	0.732	INTERGENIC	regulatory region REDfly_CRMs
2R	8996901	2R_8996901_SNP [dm3] 2R_13109396_SNP [dm6]	C	A	2.514e^-4	0.732	INTERGENIC
2L	5239180	2L_5239180_SNP [dm3] 2L_5239180_SNP [dm6]	A	T	2.516e^-4	0.732	INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Stat92E mE1_TFBS_Trl
3R	22673992	3R_22673992_SNP [dm3] 3R_26848270_SNP [dm6]	C	A	2.522e^-4	0.732	INTRON Lerp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21026687	2L_21026687_SNP [dm3] 2L_21026687_SNP [dm6]	C	G	2.530e^-4	0.732	INTRON CG42238	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13855133	2R_13855133_SNP [dm3] 2R_17967628_SNP [dm6]	C	T	2.535e^-4	0.732	INTERGENIC
X	2926636	X_2926636_SNP [dm3] X_3032603_SNP [dm6]	T	A	2.547e^-4	0.732	INTRON kirre
2R	7426736	2R_7426736_SNP [dm3] 2R_11539231_SNP [dm6]	G	A	2.559e^-4	0.732	INTERGENIC
X	20426723	X_20426723_INS [dm3] X_20555696_INS [dm6]	A	ATATAT	2.559e^-4	0.732	INTRON RunxB
2R	19024849	2R_19024849_SNP [dm3] 2R_23137326_SNP [dm6]	T	G	2.560e^-4	0.732	INTERGENIC
2L	13505410	2L_13505410_SNP [dm3] 2L_13505410_SNP [dm6]	T	C	2.568e^-4	0.732	SYNONYMOUS_CODING B4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9147038	2R_9147038_SNP [dm3] 2R_13259533_SNP [dm6]	G	A	2.571e^-4	0.732	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2R	11177864	2R_11177864_SNP [dm3] 2R_15290359_SNP [dm6]	A	G	2.581e^-4	0.732	INTRON Trpm
2R	12545025	2R_12545025_INS [dm3] 2R_16657520_INS [dm6]	T	TATTTCACTAAATCTGTAAA...	2.592e^-4	0.732	INTRON Picot
3L	16338151	3L_16338151_SNP [dm3] 3L_16345051_SNP [dm6]	T	C	2.594e^-4	0.732	UTR_3_PRIME CG4998	TF binding site mE1_TFBS_cad
2L	21921535	2L_21921535_SNP [dm3] 2L_21921535_SNP [dm6]	T	C	2.608e^-4	0.732	INTERGENIC
2L	5033736	2L_5033736_SNP [dm3] 2L_5033736_SNP [dm6]	A	C	2.615e^-4	0.732	SYNONYMOUS_CODING Cg25C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22090060	3R_22090060_SNP [dm3] 3R_26264338_SNP [dm6]	T	C	2.616e^-4	0.732	INTRON CG6154
X	5850108	X_5850108_INS [dm3] X_5956075_INS [dm6]	G	GAT	2.618e^-4	0.732	INTRON CG6067
2L	5239016	2L_5239016_SNP [dm3] 2L_5239016_SNP [dm6]	T	A	2.619e^-4	0.732	INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	17937588	2L_17937588_SNP [dm3] 2L_17937588_SNP [dm6]	C	T	2.621e^-4	0.732	INTERGENIC
X	16341662	X_16341662_INS [dm3] X_16447629_INS [dm6]	T	TAATTATATT	2.621e^-4	0.732	UTR_3_PRIME CG34015 UPSTREAM eIF-2alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16890386	3R_16890386_SNP [dm3] 3R_21064664_SNP [dm6]	A	G	2.624e^-4	0.732	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3L	10916943	3L_10916943_SNP [dm3] 3L_10923843_SNP [dm6]	T	A	2.625e^-4	0.732	INTERGENIC
2R	20223672	2R_20223672_SNP [dm3] 2R_24336149_SNP [dm6]	C	G	2.626e^-4	0.732	UPSTREAM CR44282 INTERGENIC
3R	7448384	3R_7448384_SNP [dm3] 3R_11622662_SNP [dm6]	G	A	2.634e^-4	0.732	SYNONYMOUS_CODING CG6808 UPSTREAM CG14711 DOWNSTREAM CG14710	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	19564919	2R_19564919_SNP [dm3] 2R_23677396_SNP [dm6]	C	G	2.637e^-4	0.732	INTRON Pde8	TF binding site mE1_TFBS_cad
2R	7567701	2R_7567701_SNP [dm3] 2R_11680196_SNP [dm6]	T	C	2.644e^-4	0.732	UPSTREAM Roc2 INTRON Buffy	TF binding site mE1_TFBS_inv
X	4860884	X_4860884_SNP [dm3] X_4966851_SNP [dm6]	T	C	2.645e^-4	0.732	INTRON CR44833	regulatory region REDfly_CRMs
2L	2915230	2L_2915230_SNP [dm3] 2L_2915230_SNP [dm6]	G	C	2.652e^-4	0.732	INTRON lilli
3L	17630713	3L_17630713_SNP [dm3] 3L_17637613_SNP [dm6]	G	A	2.653e^-4	0.732	SYNONYMOUS_CODING CG7497 DOWNSTREAM Pep
3L	14195711	3L_14195711_SNP [dm3] 3L_14202611_SNP [dm6]	C	G	2.656e^-4	0.732	UPSTREAM CG32141 INTRON nuf	TF binding site mE1_TFBS_cad
3R	16438846	3R_16438846_SNP [dm3] 3R_20613124_SNP [dm6]	G	A	2.661e^-4	0.732	DOWNSTREAM bon INTRON CG15923	TF binding site mE1_TFBS_cad
3R	15323143	3R_15323143_MNP [dm3] 3R_19497421_MNP [dm6]	TAT	CTA	2.663e^-4	0.732	INTRON Dys
2L	19749626	2L_19749626_SNP [dm3] 2L_19749626_SNP [dm6]	C	T	2.665e^-4	0.732	SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_cad
3R	15326735	3R_15326735_SNP [dm3] 3R_19501013_SNP [dm6]	G	C	2.666e^-4	0.732	INTRON Dys
3L	4683407	3L_4683407_SNP [dm3] 3L_4683407_SNP [dm6]	T	A	2.670e^-4	0.732	INTRON axo
3L	2655053	3L_2655053_SNP [dm3] 3L_2655053_SNP [dm6]	G	C	2.672e^-4	0.732	NON_SYNONYMOUS_CODING CG42304 UTR_3_PRIME Snup DOWNSTREAM Fife
3L	7938349	3L_7938349_SNP [dm3] 3L_7945249_SNP [dm6]	C	T	2.674e^-4	0.732	DOWNSTREAM CG43880 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7938356	3L_7938356_INS [dm3] 3L_7945256_INS [dm6]	C	CTT	2.674e^-4	0.732	DOWNSTREAM CG43880 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7938358	3L_7938358_SNP [dm3] 3L_7945258_SNP [dm6]	C	A	2.674e^-4	0.732	DOWNSTREAM CG43880 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7938362	3L_7938362_INS [dm3] 3L_7945262_INS [dm6]	G	TTTCATC	2.674e^-4	0.732	DOWNSTREAM CG43880 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18328673	2L_18328673_SNP [dm3] 2L_18328673_SNP [dm6]	G	C	2.679e^-4	0.732	INTRON Fas3
X	5850051	X_5850051_SNP [dm3] X_5956018_SNP [dm6]	T	A	2.684e^-4	0.732	INTRON CG6067
3L	10003474	3L_10003474_INS [dm3] 3L_10010374_INS [dm6]	A	AA	2.685e^-4	0.732	INTRON dpr6
2R	12456029	2R_12456029_SNP [dm3] 2R_16568524_SNP [dm6]	C	A	2.685e^-4	0.732	INTRON CG4945	TF binding site mE1_TFBS_cad
2R	12434771	2R_12434771_DEL [dm3] 2R_16547266_DEL [dm6]	TT	T	2.695e^-4	0.732	INTERGENIC
2R	15885596	2R_15885596_SNP [dm3] 2R_19998091_SNP [dm6]	T	A	2.702e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	17630701	3L_17630701_SNP [dm3] 3L_17637601_SNP [dm6]	T	C	2.708e^-4	0.732	SYNONYMOUS_CODING CG7497 DOWNSTREAM Pep
3R	22676664	3R_22676664_SNP [dm3] 3R_26850942_SNP [dm6]	T	C	2.715e^-4	0.732	INTRON Lerp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	742989	3L_742989_SNP [dm3] 3L_742989_SNP [dm6]	C	A	2.724e^-4	0.732	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	9131300	2R_9131300_SNP [dm3] 2R_13243795_SNP [dm6]	A	T	2.725e^-4	0.732	DOWNSTREAM CR45278 INTERGENIC
3L	7450156	3L_7450156_SNP [dm3] 3L_7457056_SNP [dm6]	G	A	2.739e^-4	0.732	SYNONYMOUS_CODING ppk26
3R	22696245	3R_22696245_SNP [dm3] 3R_26870523_SNP [dm6]	G	T	2.742e^-4	0.732	UTR_5_PRIME BM-40-SPARC INTRON BM-40-SPARC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	3375029	X_3375029_SNP [dm3] X_3480996_SNP [dm6]	G	A	2.748e^-4	0.732	UTR_5_PRIME CG10804 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl
X	3375057	X_3375057_SNP [dm3] X_3481024_SNP [dm6]	A	G	2.748e^-4	0.732	UTR_5_PRIME CG10804 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl
X	1190943	X_1190943_SNP [dm3] X_1296910_SNP [dm6]	T	C	2.750e^-4	0.732	INTRON DAAM	TF binding site mE1_TFBS_chinmo
X	5111408	X_5111408_SNP [dm3] X_5217375_SNP [dm6]	T	C	2.765e^-4	0.732	INTRON CG15465 & 1 other	TF binding site BDTNP1_TFBS_dl
X	6196959	X_6196959_SNP [dm3] X_6302926_SNP [dm6]	G	A	2.766e^-4	0.732	INTERGENIC
3L	7209808	3L_7209808_SNP [dm3] 3L_7216708_SNP [dm6]	T	C	2.770e^-4	0.732	INTERGENIC
2R	5109293	2R_5109293_SNP [dm3] 2R_9221788_SNP [dm6]	C	G	2.771e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	6055577	3L_6055577_SNP [dm3] 3L_6062477_SNP [dm6]	G	A	2.772e^-4	0.732	SYNONYMOUS_CODING CG10472	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1866893	3L_1866893_SNP [dm3] 3L_1866893_SNP [dm6]	T	G	2.772e^-4	0.732	INTRON CG12025	TF binding site BDTNP1_TFBS_twi
3L	3777177	3L_3777177_SNP [dm3] 3L_3777177_SNP [dm6]	T	C	2.773e^-4	0.732	INTRON CG32264
3L	13239943	3L_13239943_SNP [dm3] 3L_13246843_SNP [dm6]	T	A	2.777e^-4	0.732	DOWNSTREAM CG32119 INTRON caps
3R	25398712	3R_25398712_SNP [dm3] 3R_29572990_SNP [dm6]	A	G	2.778e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	1420684	3L_1420684_SNP [dm3] 3L_1420684_SNP [dm6]	G	A	2.784e^-4	0.732	DOWNSTREAM CG9173 INTRON Ptp61F
X	22253518	X_22253518_SNP [dm3] X_22851682_SNP [dm6]	G	T	2.790e^-4	0.732	INTRON fog & 1 other
X	5629356	X_5629356_SNP [dm3] X_5735323_SNP [dm6]	G	A	2.792e^-4	0.732	DOWNSTREAM CG15773 INTRON CG32758	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	20732593	3L_20732593_SNP [dm3] 3L_20739493_SNP [dm6]	T	A	2.798e^-4	0.732	UPSTREAM Gr77a INTRON CG13252
3R	7413598	3R_7413598_SNP [dm3] 3R_11587876_SNP [dm6]	G	A	2.800e^-4	0.732	SYNONYMOUS_CODING CG6791	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15247968	3L_15247968_SNP [dm3] 3L_15254868_SNP [dm6]	C	A	2.802e^-4	0.732	INTERGENIC
3L	22834739	3L_22834739_SNP [dm3] 3L_22841639_SNP [dm6]	G	T	2.811e^-4	0.732	DOWNSTREAM CR45659 INTERGENIC
2L	15186804	2L_15186804_SNP [dm3] 2L_15186804_SNP [dm6]	T	C	2.812e^-4	0.732	INTRON CG4168
3R	10807878	3R_10807878_SNP [dm3] 3R_14982156_SNP [dm6]	C	T	2.813e^-4	0.732	INTERGENIC
3L	1963124	3L_1963124_SNP [dm3] 3L_1963124_SNP [dm6]	A	C	2.837e^-4	0.732	UPSTREAM SCOT INTRON mv	TF binding site mE1_TFBS_Trl
3R	15318392	3R_15318392_SNP [dm3] 3R_19492670_SNP [dm6]	C	A	2.847e^-4	0.732	INTRON Dys
3R	25851526	3R_25851526_INS [dm3] 3R_30025804_INS [dm6]	CT	TGTTTCATGTTCATGTTTC...	2.850e^-4	0.732	INTRON Axn
X	13504220	X_13504220_SNP [dm3] X_13610187_SNP [dm6]	T	C	2.851e^-4	0.732	SYNONYMOUS_CODING Ndc80 DOWNSTREAM CG11178	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25226172	3R_25226172_DEL [dm3] 3R_29400450_DEL [dm6]	ATTAAGTATCAA...	A	2.853e^-4	0.732	INTRON Ptp99A
3L	6092209	3L_6092209_SNP [dm3] 3L_6099109_SNP [dm6]	T	C	2.860e^-4	0.732	INTRON Ets65A
X	3380537	X_3380537_SNP [dm3] X_3486504_SNP [dm6]	A	G	2.865e^-4	0.732	NON_SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_sens
3R	13948380	3R_13948380_SNP [dm3] 3R_18122658_SNP [dm6]	T	G	2.870e^-4	0.732	INTRON sr	TF binding site BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	2651764	3L_2651764_SNP [dm3] 3L_2651764_SNP [dm6]	G	T	2.873e^-4	0.732	UTR_5_PRIME Aats-pro UPSTREAM Snup & 1 other
3R	15292564	3R_15292564_SNP [dm3] 3R_19466842_SNP [dm6]	T	C	2.883e^-4	0.732	INTRON Dys
3L	17459959	3L_17459959_SNP [dm3] 3L_17466859_SNP [dm6]	C	G	2.886e^-4	0.732	DOWNSTREAM CG7603 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	11459250	2L_11459250_DEL [dm3] 2L_11459250_DEL [dm6]	AA	A	2.886e^-4	0.732	INTERGENIC
3L	6253824	3L_6253824_SNP [dm3] 3L_6260724_SNP [dm6]	G	C	2.889e^-4	0.732	SYNONYMOUS_CODING ImpL3
3R	8042361	3R_8042361_SNP [dm3] 3R_12216639_SNP [dm6]	A	G	2.894e^-4	0.732	UTR_3_PRIME CG4848 DOWNSTREAM CG14742 INTRON CG4848
3R	14515011	3R_14515011_SNP [dm3] 3R_18689289_SNP [dm6]	G	A	2.896e^-4	0.732	NON_SYNONYMOUS_CODING Muc91C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11276205	3L_11276205_SNP [dm3] 3L_11283105_SNP [dm6]	T	G	2.897e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	7237832	3R_7237832_SNP [dm3] 3R_11412110_SNP [dm6]	T	G	2.905e^-4	0.732	NON_SYNONYMOUS_CODING Irbp UTR_3_PRIME Irbp UPSTREAM Ranbp9	TF binding site BDTNP1_TFBS_Med
3L	21774587	3L_21774587_SNP [dm3] 3L_21781487_SNP [dm6]	C	A	2.910e^-4	0.732	INTERGENIC
3L	9013846	3L_9013846_SNP [dm3] 3L_9020746_SNP [dm6]	T	G	2.911e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11386624	3L_11386624_SNP [dm3] 3L_11393524_SNP [dm6]	A	G	2.917e^-4	0.732	INTERGENIC
3L	8438702	3L_8438702_SNP [dm3] 3L_8445602_SNP [dm6]	A	G	2.918e^-4	0.732	INTRON CG6983	TF binding site BDTNP1_TFBS_twi
2R	18457130	2R_18457130_SNP [dm3] 2R_22569625_SNP [dm6]	A	T	2.927e^-4	0.732	INTRON dnr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	16890117	3R_16890117_DEL [dm3] 3R_21064395_DEL [dm6]	TAA	T	2.928e^-4	0.732	UTR_5_PRIME Cortactin UPSTREAM AnxB9 INTRON Cortactin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2R	9131331	2R_9131331_SNP [dm3] 2R_13243826_SNP [dm6]	A	C	2.932e^-4	0.732	DOWNSTREAM CR45278 INTERGENIC
X	16609443	X_16609443_SNP [dm3] X_16715410_SNP [dm6]	C	A	2.944e^-4	0.732	INTRON CG34325
2L	19480302	2L_19480302_SNP [dm3] 2L_19480302_SNP [dm6]	A	C	2.947e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9960823	3R_9960823_SNP [dm3] 3R_14135101_SNP [dm6]	T	C	2.961e^-4	0.732	INTERGENIC
X	12771662	X_12771662_SNP [dm3] X_12877629_SNP [dm6]	T	G	2.965e^-4	0.732	INTRON Pde9
2L	9051138	2L_9051138_SNP [dm3] 2L_9051138_SNP [dm6]	T	C	2.968e^-4	0.732	DOWNSTREAM CG31708 INTERGENIC
X	22267450	X_22267450_SNP [dm3] X_22865614_SNP [dm6]	A	T	2.969e^-4	0.732	INTRON CG42346
2L	17338537	2L_17338537_INS [dm3] 2L_17338537_INS [dm6]	T	TA	2.974e^-4	0.732	INTERGENIC
X	1500956	X_1500956_SNP [dm3] X_1606923_SNP [dm6]	C	T	2.978e^-4	0.732	INTRON br & 1 other
X	12754344	X_12754344_INS [dm3] X_12860311_INS [dm6]	T	TT	2.978e^-4	0.732	INTRON Pde9
3R	14343976	3R_14343976_SNP [dm3] 3R_18518254_SNP [dm6]	C	T	2.983e^-4	0.732	INTRON fru
2R	12458064	2R_12458064_SNP [dm3] 2R_16570559_SNP [dm6]	A	G	2.989e^-4	0.732	DOWNSTREAM CG4945 INTRON RpS15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13821226	3R_13821226_SNP [dm3] 3R_17995504_SNP [dm6]	C	T	2.992e^-4	0.732	INTRON cpo
3R	15894227	3R_15894227_SNP [dm3] 3R_20068505_SNP [dm6]	T	C	2.993e^-4	0.732	INTERGENIC
3R	16438827	3R_16438827_SNP [dm3] 3R_20613105_SNP [dm6]	A	G	2.998e^-4	0.732	DOWNSTREAM bon INTRON CG15923	TF binding site mE1_TFBS_cad
3R	16438912	3R_16438912_SNP [dm3] 3R_20613190_SNP [dm6]	T	A	2.998e^-4	0.732	DOWNSTREAM bon INTRON CG15923	TF binding site mE1_TFBS_cad
3R	24353003	3R_24353003_SNP [dm3] 3R_28527281_SNP [dm6]	A	G	2.999e^-4	0.732	SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_chinmo
3L	2404091	3L_2404091_SNP [dm3] 3L_2404091_SNP [dm6]	C	A	3.000e^-4	0.732	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9061132	3L_9061132_INS [dm3] 3L_9068032_INS [dm6]	A	ACCA	3.004e^-4	0.732	UTR_3_PRIME CG4911
3R	9003161	3R_9003161_SNP [dm3] 3R_13177439_SNP [dm6]	G	C	3.013e^-4	0.732	INTERGENIC
3L	1317358	3L_1317358_SNP [dm3] 3L_1317358_SNP [dm6]	G	T	3.020e^-4	0.732	INTRON CG9153	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10085624	3R_10085624_SNP [dm3] 3R_14259902_SNP [dm6]	A	G	3.034e^-4	0.732	SYNONYMOUS_CODING Aats-met DOWNSTREAM CG14840	TF binding site BDTNP1_TFBS_dl
3L	4307337	3L_4307337_SNP [dm3] 3L_4307337_SNP [dm6]	T	A	3.039e^-4	0.732	INTRON dyl
2R	9147009	2R_9147009_SNP [dm3] 2R_13259504_SNP [dm6]	T	G	3.041e^-4	0.732	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3R	20264995	3R_20264995_SNP [dm3] 3R_24439273_SNP [dm6]	C	A	3.041e^-4	0.732	UPSTREAM CR43455 INTRON nAChRalpha1
3L	15885771	3L_15885771_SNP [dm3] 3L_15892671_SNP [dm6]	A	G	3.043e^-4	0.732	INTRON pHCl
2R	15903310	2R_15903310_DEL [dm3] 2R_20015805_DEL [dm6]	TGA	T	3.047e^-4	0.732	DOWNSTREAM CR44630 INTERGENIC
2R	16120174	2R_16120174_SNP [dm3] 2R_20232669_SNP [dm6]	T	C	3.063e^-4	0.732	UPSTREAM tRNA:G3:56EFb INTRON CG11044
2R	20211873	2R_20211873_SNP [dm3] 2R_24324350_SNP [dm6]	G	A	3.064e^-4	0.732	UPSTREAM CR44810 INTERGENIC
3R	9571525	3R_9571525_SNP [dm3] 3R_13745803_SNP [dm6]	C	T	3.065e^-4	0.732	SYNONYMOUS_CODING CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12847020	3L_12847020_SNP [dm3] 3L_12853920_SNP [dm6]	C	T	3.067e^-4	0.732	UTR_5_PRIME Ent3 DOWNSTREAM Wbp2
2R	11178186	2R_11178186_SNP [dm3] 2R_15290681_SNP [dm6]	T	C	3.076e^-4	0.732	INTRON Trpm
3L	11586483	3L_11586483_SNP [dm3] 3L_11593383_SNP [dm6]	T	A	3.076e^-4	0.732	UPSTREAM CR45442 & 1 other DOWNSTREAM CR45443 & 1 other INTERGENIC
2L	18376210	2L_18376210_SNP [dm3] 2L_18376210_SNP [dm6]	C	T	3.078e^-4	0.732	INTRON Fas3
2L	8447265	2L_8447265_SNP [dm3] 2L_8447265_SNP [dm6]	A	G	3.091e^-4	0.732	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	20223669	2R_20223669_SNP [dm3] 2R_24336146_SNP [dm6]	A	G	3.092e^-4	0.732	UPSTREAM CR44282 INTERGENIC
3L	20678872	3L_20678872_SNP [dm3] 3L_20685772_SNP [dm6]	G	A	3.096e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_sens
3L	7611943	3L_7611943_SNP [dm3] 3L_7618843_SNP [dm6]	G	A	3.097e^-4	0.732	INTRON CG33275
3L	2651851	3L_2651851_SNP [dm3] 3L_2651851_SNP [dm6]	G	A	3.100e^-4	0.732	UPSTREAM Snup & 2 others INTERGENIC
X	14182722	X_14182722_DEL [dm3] X_14288689_DEL [dm6]	CAAT	C	3.104e^-4	0.732	DOWNSTREAM Muc12Ea INTRON CG9400	TF binding site mE1_TFBS_HSA
X	6694845	X_6694845_SNP [dm3] X_6800812_SNP [dm6]	C	A	3.105e^-4	0.732	UPSTREAM C3G INTRON C3G	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20298644	3R_20298644_SNP [dm3] 3R_24472922_SNP [dm6]	G	A	3.111e^-4	0.732	INTERGENIC
3R	9823760	3R_9823760_SNP [dm3] 3R_13998038_SNP [dm6]	T	C	3.113e^-4	0.732	INTRON rdx	TF binding site mE1_TFBS_HSA
3L	2311212	3L_2311212_INS [dm3] 3L_2311212_INS [dm6]	T	TGTAT	3.117e^-4	0.732	INTERGENIC
2L	17338536	2L_17338536_SNP [dm3] 2L_17338536_SNP [dm6]	T	A	3.119e^-4	0.732	INTERGENIC
3L	1850451	3L_1850451_SNP [dm3] 3L_1850451_SNP [dm6]	A	C	3.125e^-4	0.732	DOWNSTREAM CG13936 INTERGENIC
3L	2307155	3L_2307155_SNP [dm3] 3L_2307155_SNP [dm6]	A	G	3.127e^-4	0.732	INTERGENIC
3L	22919324	3L_22919324_SNP [dm3] 3L_22926224_SNP [dm6]	C	T	3.133e^-4	0.732	INTERGENIC
3L	2652170	3L_2652170_SNP [dm3] 3L_2652170_SNP [dm6]	C	A	3.134e^-4	0.732	NON_SYNONYMOUS_CODING Snup START_GAINED CG42304 UTR_5_PRIME CG42304 UPSTREAM Aats-pro	TF binding site mE1_TFBS_cad
2R	1404171	2R_1404171_SNP [dm3] 2R_5516666_SNP [dm6]	T	G	3.134e^-4	0.732	INTRON CG30438	transposable element FlyBase
3L	1995535	3L_1995535_SNP [dm3] 3L_1995535_SNP [dm6]	G	C	3.140e^-4	0.732	INTERGENIC
3L	11236588	3L_11236588_SNP [dm3] 3L_11243488_SNP [dm6]	C	T	3.142e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	9986183	X_9986183_INS [dm3] X_10092150_INS [dm6]	C	CA	3.142e^-4	0.732	INTRON RhoU	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2657251	3L_2657251_SNP [dm3] 3L_2657251_SNP [dm6]	C	T	3.145e^-4	0.732	UTR_3_PRIME Fife	TF binding site BDTNP1_TFBS_da
3L	2150652	3L_2150652_SNP [dm3] 3L_2150652_SNP [dm6]	C	T	3.146e^-4	0.732	INTRON zormin
X	7699422	X_7699422_SNP [dm3] X_7805389_SNP [dm6]	G	C	3.149e^-4	0.732	INTERGENIC
3L	6055459	3L_6055459_SNP [dm3] 3L_6062359_SNP [dm6]	G	T	3.154e^-4	0.732	SYNONYMOUS_CODING CG10472 DOWNSTREAM CG6592	TF binding site mE1_TFBS_cad
2L	1378411	2L_1378411_SNP [dm3] 2L_1378411_SNP [dm6]	A	T	3.155e^-4	0.732	INTERGENIC
3R	10190461	3R_10190461_SNP [dm3] 3R_14364739_SNP [dm6]	G	T	3.157e^-4	0.732	INTRON NK7.1
2R	18738047	2R_18738047_SNP [dm3] 2R_22850524_SNP [dm6]	T	A	3.166e^-4	0.732	NON_SYNONYMOUS_CODING CG13531	TF binding site mE1_TFBS_inv
3L	10793964	3L_10793964_SNP [dm3] 3L_10800864_SNP [dm6]	A	G	3.171e^-4	0.732	UPSTREAM CG12523 INTERGENIC	TF binding site mE1_TFBS_cad
3L	15740654	3L_15740654_SNP [dm3] 3L_15747554_SNP [dm6]	A	G	3.175e^-4	0.732	EXON CR45240
3R	7442637	3R_7442637_SNP [dm3] 3R_11616915_SNP [dm6]	G	A	3.187e^-4	0.732	INTRON Jupiter	TF binding site mE1_TFBS_sens
2R	12456039	2R_12456039_SNP [dm3] 2R_16568534_SNP [dm6]	T	C	3.195e^-4	0.732	INTRON CG4945	TF binding site mE1_TFBS_cad
X	3710563	X_3710563_SNP [dm3] X_3816530_SNP [dm6]	A	C	3.198e^-4	0.732	INTRON ec	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	21439644	3L_21439644_SNP [dm3] 3L_21446544_SNP [dm6]	T	A	3.199e^-4	0.732	INTRON Syx7	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	19758678	2L_19758678_SNP [dm3] 2L_19758678_SNP [dm6]	G	A	3.201e^-4	0.732	UPSTREAM CG10463 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	6256631	3L_6256631_SNP [dm3] 3L_6263531_SNP [dm6]	A	G	3.204e^-4	0.732	UPSTREAM ImpL3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15894772	3R_15894772_DEL [dm3] 3R_20069050_DEL [dm6]	GG	A	3.205e^-4	0.732	INTERGENIC
2R	6064333	2R_6064333_SNP [dm3] 2R_10176828_SNP [dm6]	G	A	3.208e^-4	0.732	INTRON KCNQ
2L	11459259	2L_11459259_SNP [dm3] 2L_11459259_SNP [dm6]	A	T	3.209e^-4	0.732	INTERGENIC
2L	21310450	2L_21310450_SNP [dm3] 2L_21310450_SNP [dm6]	T	A	3.210e^-4	0.732	UPSTREAM Mio & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7309976	3L_7309976_SNP [dm3] 3L_7316876_SNP [dm6]	G	A	3.220e^-4	0.732	INTERGENIC
X	18143178	X_18143178_SNP [dm3] X_18249145_SNP [dm6]	T	A	3.223e^-4	0.732	INTERGENIC
3R	14882977	3R_14882977_SNP [dm3] 3R_19057255_SNP [dm6]	A	C	3.227e^-4	0.732	INTRON cdi
3R	18959241	3R_18959241_SNP [dm3] 3R_23133519_SNP [dm6]	A	G	3.229e^-4	0.732	INTRON hh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
3L	1293874	3L_1293874_SNP [dm3] 3L_1293874_SNP [dm6]	G	A	3.230e^-4	0.732	SYNONYMOUS_CODING CG32333
X	20529036	X_20529036_SNP [dm3] X_20658009_SNP [dm6]	G	T	3.233e^-4	0.732	UTR_5_PRIME Cyp6v1 UPSTREAM CR45466
2L	7100243	2L_7100243_SNP [dm3] 2L_7100243_SNP [dm6]	G	C	3.241e^-4	0.732	INTRON Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	6344323	2R_6344323_SNP [dm3] 2R_10456818_SNP [dm6]	A	T	3.241e^-4	0.732	INTRON Galphao & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	21498688	X_21498688_SNP [dm3] X_21627661_SNP [dm6]	A	T	3.243e^-4	0.732	INTRON DIP1	transposable element FlyBase
2R	16922876	2R_16922876_SNP [dm3] 2R_21035371_SNP [dm6]	T	A	3.247e^-4	0.732	INTERGENIC
2R	20211866	2R_20211866_SNP [dm3] 2R_24324343_SNP [dm6]	T	A	3.256e^-4	0.732	UPSTREAM CR44810 INTERGENIC
3L	1167757	3L_1167757_SNP [dm3] 3L_1167757_SNP [dm6]	C	T	3.257e^-4	0.732	INTRON bab2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7569018	2R_7569018_SNP [dm3] 2R_11681513_SNP [dm6]	A	G	3.260e^-4	0.732	INTRON Buffy
3L	6089865	3L_6089865_DEL [dm3] 3L_6096765_DEL [dm6]	AGA	A	3.264e^-4	0.732	UPSTREAM Ets65A DOWNSTREAM loj INTERGENIC
3R	14879346	3R_14879346_SNP [dm3] 3R_19053624_SNP [dm6]	T	C	3.267e^-4	0.732	INTRON cdi
2L	12167870	2L_12167870_SNP [dm3] 2L_12167870_SNP [dm6]	T	C	3.268e^-4	0.732	INTRON CG31760
3R	26342697	3R_26342697_SNP [dm3] 3R_30516975_SNP [dm6]	G	A	3.271e^-4	0.732	DOWNSTREAM jdp & 1 other INTERGENIC
2R	7076790	2R_7076790_SNP [dm3] 2R_11189285_SNP [dm6]	G	A	3.288e^-4	0.732	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6746899	3R_6746899_SNP [dm3] 3R_10921177_SNP [dm6]	T	C	3.289e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6055156	3L_6055156_SNP [dm3] 3L_6062056_SNP [dm6]	C	T	3.293e^-4	0.732	DOWNSTREAM CG6592 INTRON CG10472
X	3160558	X_3160558_SNP [dm3] X_3266525_SNP [dm6]	A	T	3.299e^-4	0.732	INTRON dnc
3L	2157404	3L_2157404_SNP [dm3] 3L_2157404_SNP [dm6]	A	G	3.310e^-4	0.732	SYNONYMOUS_CODING CG15822	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14098408	X_14098408_SNP [dm3] X_14204375_SNP [dm6]	G	T	3.313e^-4	0.732	UTR_3_PRIME l_1_G0469 INTRON l_1_G0007
2R	12539421	2R_12539421_SNP [dm3] 2R_16651916_SNP [dm6]	G	A	3.316e^-4	0.732	SYNONYMOUS_CODING Amyrel DOWNSTREAM gprs	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9147010	2R_9147010_SNP [dm3] 2R_13259505_SNP [dm6]	T	G	3.320e^-4	0.732	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2R	6823711	2R_6823711_SNP [dm3] 2R_10936206_SNP [dm6]	C	A	3.321e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	16609430	X_16609430_SNP [dm3] X_16715397_SNP [dm6]	A	T	3.322e^-4	0.732	INTRON CG34325
3R	5087648	3R_5087648_SNP [dm3] 3R_9261926_SNP [dm6]	C	G	3.322e^-4	0.732	SYNONYMOUS_CODING VhaM8.9 DOWNSTREAM sage
2L	3019553	2L_3019553_SNP [dm3] 2L_3019553_SNP [dm6]	G	C	3.324e^-4	0.732	SYNONYMOUS_CODING CG17264	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	12313178	2L_12313178_SNP [dm3] 2L_12313178_SNP [dm6]	A	T	3.338e^-4	0.732	UTR_3_PRIME aret DOWNSTREAM aret
3L	18593227	3L_18593227_SNP [dm3] 3L_18600127_SNP [dm6]	C	T	3.344e^-4	0.732	DOWNSTREAM CG13380 & 1 other INTERGENIC
3L	7309978	3L_7309978_SNP [dm3] 3L_7316878_SNP [dm6]	G	T	3.347e^-4	0.732	INTERGENIC
3L	6055306	3L_6055306_SNP [dm3] 3L_6062206_SNP [dm6]	A	G	3.349e^-4	0.732	DOWNSTREAM CG6592 INTRON CG10472	TF binding site mE1_TFBS_cad
2R	8136797	2R_8136797_SNP [dm3] 2R_12249292_SNP [dm6]	G	A	3.350e^-4	0.732	INTERGENIC
3L	20743241	3L_20743241_SNP [dm3] 3L_20750141_SNP [dm6]	A	C	3.352e^-4	0.732	INTERGENIC
3R	10804408	3R_10804408_SNP [dm3] 3R_14978686_SNP [dm6]	C	T	3.356e^-4	0.732	INTERGENIC
3R	7440402	3R_7440402_SNP [dm3] 3R_11614680_SNP [dm6]	G	T	3.368e^-4	0.732	INTRON Jupiter	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc
X	7699722	X_7699722_SNP [dm3] X_7805689_SNP [dm6]	A	C	3.370e^-4	0.732	INTERGENIC
3L	22901857	3L_22901857_INS [dm3] 3L_22908757_INS [dm6]	A	AA	3.371e^-4	0.732	UPSTREAM CR45661 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7196077	2L_7196077_SNP [dm3] 2L_7196077_SNP [dm6]	G	A	3.374e^-4	0.732	INTRON CG4502
2R	17485600	2R_17485600_SNP [dm3] 2R_21598095_SNP [dm6]	T	C	3.376e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5630995	2L_5630995_SNP [dm3] 2L_5630995_SNP [dm6]	T	C	3.381e^-4	0.732	DOWNSTREAM CR44822 INTRON CG31646	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	18849074	3L_18849074_SNP [dm3] 3L_18855974_SNP [dm6]	G	C	3.384e^-4	0.732	UPSTREAM CR45388 INTERGENIC
X	3536493	X_3536493_SNP [dm3] X_3642460_SNP [dm6]	T	C	3.387e^-4	0.732	INTRON AstA-R1
2L	13987338	2L_13987338_SNP [dm3] 2L_13987338_SNP [dm6]	G	C	3.389e^-4	0.732	INTRON rk
3L	16013493	3L_16013493_SNP [dm3] 3L_16020393_SNP [dm6]	T	A	3.403e^-4	0.732	DOWNSTREAM CR43949 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2L	21310404	2L_21310404_SNP [dm3] 2L_21310404_SNP [dm6]	T	G	3.409e^-4	0.732	UPSTREAM Mio & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	20998639	2L_20998639_SNP [dm3] 2L_20998639_SNP [dm6]	C	T	3.409e^-4	0.732	INTRON CG42238	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3R	23565299	3R_23565299_DEL [dm3] 3R_27739577_DEL [dm6]	CCATCACCCATGGC...	C	3.412e^-4	0.732	INTRON Ets98B
3L	5238268	3L_5238268_SNP [dm3] 3L_5245168_SNP [dm6]	G	T	3.422e^-4	0.732	INTRON shep
3L	6256852	3L_6256852_SNP [dm3] 3L_6263752_SNP [dm6]	A	G	3.422e^-4	0.732	UPSTREAM CR44522 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	21310414	2L_21310414_SNP [dm3] 2L_21310414_SNP [dm6]	G	A	3.431e^-4	0.732	UPSTREAM Mio & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	19610719	2L_19610719_SNP [dm3] 2L_19610719_SNP [dm6]	C	T	3.432e^-4	0.732	UTR_5_PRIME Lar UPSTREAM Lar INTRON Lar
2L	19796105	2L_19796105_SNP [dm3] 2L_19796105_SNP [dm6]	T	C	3.432e^-4	0.732	UPSTREAM sick & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
X	9970646	X_9970646_SNP [dm3] X_10076613_SNP [dm6]	A	T	3.437e^-4	0.732	DOWNSTREAM ZAP3 INTRON ZAP3
2R	20595568	2R_20595568_SNP [dm3] 2R_24708045_SNP [dm6]	G	A	3.438e^-4	0.732	INTRON Mid1
3L	14357139	3L_14357139_SNP [dm3] 3L_14364039_SNP [dm6]	T	C	3.448e^-4	0.732	INTRON fz	TF binding site BDTNP1_TFBS_da
3R	19656518	3R_19656518_SNP [dm3] 3R_23830796_SNP [dm6]	C	A	3.450e^-4	0.732	INTRON CG34355
X	3781705	X_3781705_SNP [dm3] X_3887672_SNP [dm6]	T	G	3.460e^-4	0.732	INTRON CG15239
2R	20211874	2R_20211874_SNP [dm3] 2R_24324351_SNP [dm6]	A	C	3.462e^-4	0.732	UPSTREAM CR44810 INTERGENIC
3L	4619304	3L_4619304_SNP [dm3] 3L_4619304_SNP [dm6]	C	A	3.462e^-4	0.732	INTRON Src64B
3L	7263081	3L_7263081_SNP [dm3] 3L_7269981_SNP [dm6]	G	A	3.466e^-4	0.732	SYNONYMOUS_CODING unc-13-4A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8396707	3L_8396707_SNP [dm3] 3L_8403607_SNP [dm6]	C	A	3.470e^-4	0.732	NON_SYNONYMOUS_CODING mkg-p UTR_3_PRIME CG33057	TF binding site mE1_TFBS_sens
2R	10998512	2R_10998512_SNP [dm3] 2R_15111007_SNP [dm6]	G	T	3.474e^-4	0.732	INTERGENIC
3R	10315159	3R_10315159_SNP [dm3] 3R_14489437_SNP [dm6]	C	T	3.476e^-4	0.732	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	5656147	3L_5656147_SNP [dm3] 3L_5663047_SNP [dm6]	A	T	3.479e^-4	0.732	UPSTREAM Sse INTRON sif
2R	9131372	2R_9131372_SNP [dm3] 2R_13243867_SNP [dm6]	T	C	3.483e^-4	0.732	DOWNSTREAM CR45278 INTERGENIC
2R	7567930	2R_7567930_SNP [dm3] 2R_11680425_SNP [dm6]	G	T	3.484e^-4	0.732	INTRON Buffy	TF binding site mE1_TFBS_inv
3R	16280212	3R_16280212_SNP [dm3] 3R_20454490_SNP [dm6]	C	T	3.486e^-4	0.732	INTRON Gfrl
3R	12322172	3R_12322172_SNP [dm3] 3R_16496450_SNP [dm6]	A	T	3.489e^-4	0.732	INTERGENIC
3R	14350093	3R_14350093_SNP [dm3] 3R_18524371_SNP [dm6]	A	C	3.499e^-4	0.732	INTRON fru
2L	20723806	2L_20723806_SNP [dm3] 2L_20723806_SNP [dm6]	C	T	3.500e^-4	0.732	DOWNSTREAM CG9316 INTERGENIC
3R	15240811	3R_15240811_SNP [dm3] 3R_19415089_SNP [dm6]	T	A	3.503e^-4	0.732	INTRON CG31221
3R	9942405	3R_9942405_SNP [dm3] 3R_14116683_SNP [dm6]	G	A	3.505e^-4	0.732	INTRON Kif19A
3L	4348553	3L_4348553_SNP [dm3] 3L_4348553_SNP [dm6]	A	T	3.505e^-4	0.732	DOWNSTREAM CR45156 INTRON Cip4
3L	1353935	3L_1353935_SNP [dm3] 3L_1353935_SNP [dm6]	T	C	3.512e^-4	0.732	INTRON Ptp61F
2R	9131320	2R_9131320_SNP [dm3] 2R_13243815_SNP [dm6]	T	G	3.521e^-4	0.732	DOWNSTREAM CR45278 INTERGENIC
3R	5645675	3R_5645675_INS [dm3] 3R_9819953_INS [dm6]	G	GGG	3.525e^-4	0.732	UPSTREAM CG9458 DOWNSTREAM CG42857 INTERGENIC
2L	1421976	2L_1421976_SNP [dm3] 2L_1421976_SNP [dm6]	A	G	3.527e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10082295	2L_10082295_SNP [dm3] 2L_10082295_SNP [dm6]	C	T	3.527e^-4	0.732	INTRON CG44153	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10882314	3R_10882314_SNP [dm3] 3R_15056592_SNP [dm6]	T	G	3.529e^-4	0.732	UTR_3_PRIME dpr9
3R	23199036	3R_23199036_SNP [dm3] 3R_27373314_SNP [dm6]	G	T	3.535e^-4	0.732	DOWNSTREAM CG42534 INTERGENIC
3R	15825386	3R_15825386_SNP [dm3] 3R_19999664_SNP [dm6]	T	A	3.535e^-4	0.732	INTRON Hs6st
X	3020162	X_3020162_SNP [dm3] X_3126129_SNP [dm6]	A	G	3.537e^-4	0.732	INTRON kirre
2R	14086288	2R_14086288_SNP [dm3] 2R_18198783_SNP [dm6]	A	C	3.541e^-4	0.732	INTERGENIC
3R	13948377	3R_13948377_SNP [dm3] 3R_18122655_SNP [dm6]	A	T	3.547e^-4	0.732	INTRON sr	TF binding site BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	21769713	3L_21769713_DEL [dm3] 3L_21776613_DEL [dm6]	ATCGGTTCAGTTAACATGTG...	A	3.550e^-4	0.732	INTRON CG42689 & 1 other	TF binding site mE1_TFBS_cad
3L	1187965	3L_1187965_SNP [dm3] 3L_1187965_SNP [dm6]	A	G	3.552e^-4	0.732	INTERGENIC
2L	19724598	2L_19724598_SNP [dm3] 2L_19724598_SNP [dm6]	A	G	3.553e^-4	0.732	INTRON Lar
3L	5279568	3L_5279568_SNP [dm3] 3L_5286468_SNP [dm6]	C	A	3.559e^-4	0.732	INTERGENIC
3L	2646952	3L_2646952_SNP [dm3] 3L_2646952_SNP [dm6]	A	T	3.560e^-4	0.732	UTR_3_PRIME CG1143 DOWNSTREAM CG1143
X	20228925	X_20228925_SNP [dm3] X_20357898_SNP [dm6]	G	T	3.562e^-4	0.732	INTERGENIC
2R	8132873	2R_8132873_SNP [dm3] 2R_12245368_SNP [dm6]	C	A	3.564e^-4	0.732	UPSTREAM CG43244 INTERGENIC
2L	12930457	2L_12930457_SNP [dm3] 2L_12930457_SNP [dm6]	G	A	3.577e^-4	0.732	DOWNSTREAM ACXE INTERGENIC
X	3710364	X_3710364_SNP [dm3] X_3816331_SNP [dm6]	G	C	3.579e^-4	0.732	INTRON ec	TF binding site BDTNP1_TFBS_twi
2L	16228096	2L_16228096_SNP [dm3] 2L_16228096_SNP [dm6]	C	T	3.583e^-4	0.732	INTERGENIC
2L	2392715	2L_2392715_SNP [dm3] 2L_2392715_SNP [dm6]	G	T	3.588e^-4	0.732	INTRON VGlut
2R	6827394	2R_6827394_SNP [dm3] 2R_10939889_SNP [dm6]	G	T	3.593e^-4	0.732	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
3L	5477429	3L_5477429_SNP [dm3] 3L_5484329_SNP [dm6]	G	A	3.597e^-4	0.732	DOWNSTREAM CG4835 INTERGENIC
3R	18494639	3R_18494639_SNP [dm3] 3R_22668917_SNP [dm6]	T	G	3.601e^-4	0.732	INTRON CG45058	TF binding site BDTNP1_TFBS_dl
3L	20757290	3L_20757290_SNP [dm3] 3L_20764190_SNP [dm6]	T	G	3.603e^-4	0.732	INTERGENIC
3L	15074412	3L_15074412_SNP [dm3] 3L_15081312_SNP [dm6]	C	T	3.604e^-4	0.732	INTRON cp309	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	18180962	2R_18180962_SNP [dm3] 2R_22293457_SNP [dm6]	T	G	3.608e^-4	0.732	UTR_5_PRIME CG5819 INTRON CG5819
3L	23000230	3L_23000230_DEL [dm3] 3L_23007130_DEL [dm6]	GA	G	3.609e^-4	0.732	INTRON nrm
X	1495791	X_1495791_SNP [dm3] X_1601758_SNP [dm6]	A	C	3.615e^-4	0.732	INTRON br & 1 other
X	17368508	X_17368508_SNP [dm3] X_17474475_SNP [dm6]	A	G	3.622e^-4	0.732	INTRON CG43658
3L	10246970	3L_10246970_SNP [dm3] 3L_10253870_SNP [dm6]	A	G	3.622e^-4	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11459249	2L_11459249_SNP [dm3] 2L_11459249_SNP [dm6]	A	T	3.625e^-4	0.732	INTERGENIC
2R	19894636	2R_19894636_SNP [dm3] 2R_24007113_SNP [dm6]	T	C	3.625e^-4	0.732	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad
2R	19894656	2R_19894656_SNP [dm3] 2R_24007133_SNP [dm6]	A	G	3.625e^-4	0.732	SYNONYMOUS_CODING Unc-89
2R	9131294	2R_9131294_SNP [dm3] 2R_13243789_SNP [dm6]	A	C	3.625e^-4	0.732	DOWNSTREAM CR45278 INTERGENIC
2L	9442602	2L_9442602_SNP [dm3] 2L_9442602_SNP [dm6]	C	A	3.628e^-4	0.732	INTRON numb
2L	21019528	2L_21019528_DEL [dm3] 2L_21019528_DEL [dm6]	TT	T	3.631e^-4	0.732	INTRON CG42238
2L	2008323	2L_2008323_SNP [dm3] 2L_2008323_SNP [dm6]	T	A	3.632e^-4	0.732	UPSTREAM Nplp4 & 1 other DOWNSTREAM CR45712 INTERGENIC	TF binding site mE1_TFBS_cad
2L	8447278	2L_8447278_SNP [dm3] 2L_8447278_SNP [dm6]	T	G	3.635e^-4	0.732	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	19020595	X_19020595_SNP [dm3] X_19126562_SNP [dm6]	G	A	3.637e^-4	0.732	INTRON tgy
3R	16890622	3R_16890622_SNP [dm3] 3R_21064900_SNP [dm6]	G	A	3.645e^-4	0.732	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3L	14205284	3L_14205284_SNP [dm3] 3L_14212184_SNP [dm6]	C	T	3.651e^-4	0.732	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
3R	23198929	3R_23198929_SNP [dm3] 3R_27373207_SNP [dm6]	A	G	3.652e^-4	0.732	DOWNSTREAM CG42534 INTERGENIC
X	20426615	X_20426615_SNP [dm3] X_20555588_SNP [dm6]	G	T	3.653e^-4	0.732	INTRON RunxB
2L	10271084	2L_10271084_SNP [dm3] 2L_10271084_SNP [dm6]	C	T	3.656e^-4	0.732	SYNONYMOUS_CODING Mulk DOWNSTREAM trk
3R	4354693	3R_4354693_SNP [dm3] 3R_8528971_SNP [dm6]	C	T	3.659e^-4	0.732	UPSTREAM CG11741 INTERGENIC	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	11634258	3L_11634258_SNP [dm3] 3L_11641158_SNP [dm6]	G	A	3.661e^-4	0.732	SYNONYMOUS_CODING CG32091	TF binding site mE1_TFBS_chinmo
3R	17661277	3R_17661277_SNP [dm3] 3R_21835555_SNP [dm6]	C	T	3.664e^-4	0.732	INTERGENIC
3L	14875295	3L_14875295_SNP [dm3] 3L_14882195_SNP [dm6]	T	C	3.665e^-4	0.732	UTR_3_PRIME CG17839
2R	15188574	2R_15188574_DEL [dm3] 2R_19301069_DEL [dm6]	AA	A	3.671e^-4	0.732	INTRON Tab2	TF binding site mE1_TFBS_inv
3R	15318381	3R_15318381_SNP [dm3] 3R_19492659_SNP [dm6]	A	G	3.675e^-4	0.732	INTRON Dys
X	20426619	X_20426619_SNP [dm3] X_20555592_SNP [dm6]	C	G	3.677e^-4	0.732	INTRON RunxB
X	12821915	X_12821915_SNP [dm3] X_12927882_SNP [dm6]	C	G	3.677e^-4	0.732	INTRON fne
3L	792990	3L_792990_SNP [dm3] 3L_792990_SNP [dm6]	C	A	3.679e^-4	0.732	INTERGENIC
2R	14443671	2R_14443671_SNP [dm3] 2R_18556166_SNP [dm6]	T	C	3.685e^-4	0.732	SYNONYMOUS_CODING GEFmeso UTR_3_PRIME GEFmeso
2L	11870971	2L_11870971_SNP [dm3] 2L_11870971_SNP [dm6]	G	T	3.688e^-4	0.732	INTRON Pde1c
X	4091246	X_4091246_SNP [dm3] X_4197213_SNP [dm6]	A	G	3.689e^-4	0.732	INTRON Fas2
3L	13976092	3L_13976092_SNP [dm3] 3L_13982992_SNP [dm6]	A	G	3.692e^-4	0.732	INTRON CG17364
X	3380974	X_3380974_SNP [dm3] X_3486941_SNP [dm6]	G	A	3.713e^-4	0.732	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3381085	X_3381085_SNP [dm3] X_3487052_SNP [dm6]	G	C	3.713e^-4	0.732	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6925668	2R_6925668_SNP [dm3] 2R_11038163_SNP [dm6]	C	T	3.718e^-4	0.732	INTRON luna	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	6822162	2R_6822162_SNP [dm3] 2R_10934657_SNP [dm6]	A	T	3.723e^-4	0.732	INTERGENIC
3R	15825416	3R_15825416_SNP [dm3] 3R_19999694_SNP [dm6]	C	T	3.734e^-4	0.732	INTRON Hs6st
2R	15002521	2R_15002521_SNP [dm3] 2R_19115016_SNP [dm6]	C	A	3.738e^-4	0.732	INTRON 5-HT1A
2L	19796108	2L_19796108_INS [dm3] 2L_19796108_INS [dm6]	A	ATG	3.738e^-4	0.732	UPSTREAM sick & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3R	4596928	3R_4596928_SNP [dm3] 3R_8771206_SNP [dm6]	A	T	3.740e^-4	0.732	DOWNSTREAM CG13318 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	11928802	2L_11928802_SNP [dm3] 2L_11928802_SNP [dm6]	A	G	3.741e^-4	0.732	UPSTREAM Pde1c INTERGENIC	TF binding site mE1_TFBS_inv
3L	4642855	3L_4642855_SNP [dm3] 3L_4642855_SNP [dm6]	T	C	3.749e^-4	0.732	INTRON axo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8438706	3L_8438706_SNP [dm3] 3L_8445606_SNP [dm6]	G	A	3.754e^-4	0.732	INTRON CG6983	TF binding site BDTNP1_TFBS_twi
3R	15296092	3R_15296092_SNP [dm3] 3R_19470370_SNP [dm6]	C	A	3.755e^-4	0.732	INTRON Dys
3R	16890216	3R_16890216_SNP [dm3] 3R_21064494_SNP [dm6]	C	T	3.756e^-4	0.732	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
X	18122204	X_18122204_SNP [dm3] X_18228171_SNP [dm6]	T	G	3.757e^-4	0.732	EXON CR45622
3L	4642836	3L_4642836_SNP [dm3] 3L_4642836_SNP [dm6]	A	C	3.758e^-4	0.732	INTRON axo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17937597	2L_17937597_SNP [dm3] 2L_17937597_SNP [dm6]	C	A	3.783e^-4	0.732	INTERGENIC
3R	14152518	3R_14152518_SNP [dm3] 3R_18326796_SNP [dm6]	G	A	3.791e^-4	0.732	INTRON CG31235
2L	17333190	2L_17333190_SNP [dm3] 2L_17333190_SNP [dm6]	A	T	3.792e^-4	0.732	INTERGENIC
3L	14386551	3L_14386551_SNP [dm3] 3L_14393451_SNP [dm6]	A	T	3.793e^-4	0.732	INTERGENIC
X	14139459	X_14139459_SNP [dm3] X_14245426_SNP [dm6]	A	T	3.795e^-4	0.732	INTRON CG32599
X	10534970	X_10534970_SNP [dm3] X_10640937_SNP [dm6]	A	G	3.800e^-4	0.732	INTRON X11Lbeta
3L	2305327	3L_2305327_SNP [dm3] 3L_2305327_SNP [dm6]	G	A	3.801e^-4	0.732	INTERGENIC
2R	6827522	2R_6827522_SNP [dm3] 2R_10940017_SNP [dm6]	T	G	3.807e^-4	0.732	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
2L	7969109	2L_7969109_SNP [dm3] 2L_7969109_SNP [dm6]	A	T	3.809e^-4	0.732	INTRON Snoo
2R	7568174	2R_7568174_DEL [dm3] 2R_11680669_DEL [dm6]	TGTAC	T	3.813e^-4	0.732	INTRON Buffy	TF binding site mE1_TFBS_inv
3L	6089858	3L_6089858_SNP [dm3] 3L_6096758_SNP [dm6]	G	T	3.825e^-4	0.732	UPSTREAM Ets65A DOWNSTREAM loj INTERGENIC
2R	11330408	2R_11330408_SNP [dm3] 2R_15442903_SNP [dm6]	C	T	3.828e^-4	0.732	INTRON CG43729
3R	13600041	3R_13600041_SNP [dm3] 3R_17774319_SNP [dm6]	C	T	3.832e^-4	0.732	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3L	21774433	3L_21774433_SNP [dm3] 3L_21781333_SNP [dm6]	A	G	3.833e^-4	0.732	INTERGENIC
3L	10435786	3L_10435786_SNP [dm3] 3L_10442686_SNP [dm6]	C	T	3.836e^-4	0.732	INTERGENIC
2L	13011517	2L_13011517_SNP [dm3] 2L_13011517_SNP [dm6]	T	C	3.836e^-4	0.732	SYNONYMOUS_CODING Tor	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18290525	2R_18290525_SNP [dm3] 2R_22403020_SNP [dm6]	A	G	3.845e^-4	0.732	UPSTREAM babos EXON CR44760	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	4642355	3L_4642355_SNP [dm3] 3L_4642355_SNP [dm6]	C	T	3.848e^-4	0.732	UTR_3_PRIME axo INTRON axo
3L	18849031	3L_18849031_SNP [dm3] 3L_18855931_SNP [dm6]	A	G	3.856e^-4	0.732	UPSTREAM CR45388 INTERGENIC
3L	19938313	3L_19938313_SNP [dm3] 3L_19945213_SNP [dm6]	C	A	3.856e^-4	0.732	INTRON Ac76E
3L	16890396	3L_16890396_DEL [dm3] 3L_16897296_DEL [dm6]	AGCCTGCGAA	A	3.860e^-4	0.732	INTRON Lmpt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19741030	2L_19741030_SNP [dm3] 2L_19741030_SNP [dm6]	A	T	3.863e^-4	0.732	EXON CR44906	TF binding site mE1_TFBS_Trl
3R	25194452	3R_25194452_SNP [dm3] 3R_29368730_SNP [dm6]	C	G	3.866e^-4	0.732	UPSTREAM CG45546 INTERGENIC
3R	17553394	3R_17553394_SNP [dm3] 3R_21727672_SNP [dm6]	T	A	3.866e^-4	0.732	INTERGENIC
2R	6827442	2R_6827442_SNP [dm3] 2R_10939937_SNP [dm6]	T	C	3.870e^-4	0.732	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
2L	21310399	2L_21310399_SNP [dm3] 2L_21310399_SNP [dm6]	A	C	3.873e^-4	0.732	UPSTREAM Mio & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	3776900	3L_3776900_SNP [dm3] 3L_3776900_SNP [dm6]	C	A	3.876e^-4	0.732	INTRON CG32264
3L	12939424	3L_12939424_SNP [dm3] 3L_12946324_SNP [dm6]	T	C	3.877e^-4	0.732	INTERGENIC
3L	743046	3L_743046_SNP [dm3] 3L_743046_SNP [dm6]	A	T	3.879e^-4	0.732	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	20527070	X_20527070_SNP [dm3] X_20656043_SNP [dm6]	G	C	3.883e^-4	0.732	DOWNSTREAM CR45466 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	5010373	X_5010373_SNP [dm3] X_5116340_SNP [dm6]	G	A	3.886e^-4	0.732	INTRON rg & 1 other
2L	4946456	2L_4946456_SNP [dm3] 2L_4946456_SNP [dm6]	G	T	3.893e^-4	0.732	INTRON betaggt-I
3R	15334380	3R_15334380_SNP [dm3] 3R_19508658_SNP [dm6]	G	T	3.893e^-4	0.732	UPSTREAM Dys INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	16563334	2L_16563334_SNP [dm3] 2L_16563334_SNP [dm6]	T	G	3.895e^-4	0.732	INTRON CG42389
2L	718007	2L_718007_INS [dm3] 2L_718007_INS [dm6]	T	TT	3.897e^-4	0.732	INTERGENIC
3R	20264980	3R_20264980_SNP [dm3] 3R_24439258_SNP [dm6]	G	A	3.897e^-4	0.732	UPSTREAM CR43455 INTRON nAChRalpha1
2L	4346607	2L_4346607_INS [dm3] 2L_4346607_INS [dm6]	G	GTG	3.902e^-4	0.732	UPSTREAM CR44697 DOWNSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	6477557	X_6477557_SNP [dm3] X_6583524_SNP [dm6]	A	T	3.903e^-4	0.732	UTR_3_PRIME CG34417 INTRON CG34417
3L	14357189	3L_14357189_SNP [dm3] 3L_14364089_SNP [dm6]	C	A	3.904e^-4	0.732	INTRON fz	TF binding site BDTNP1_TFBS_da
2L	4428070	2L_4428070_SNP [dm3] 2L_4428070_SNP [dm6]	T	A	3.908e^-4	0.732	INTRON CG15431
3R	5378286	3R_5378286_SNP [dm3] 3R_9552564_SNP [dm6]	T	A	3.916e^-4	0.732	UPSTREAM CR42549 & 1 other INTRON RnpS1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	22924198	3L_22924198_SNP [dm3] 3L_22931098_SNP [dm6]	A	T	3.918e^-4	0.732	INTERGENIC
3L	6472014	3L_6472014_SNP [dm3] 3L_6478914_SNP [dm6]	G	A	3.921e^-4	0.732	INTRON CG42747
2R	12489865	2R_12489865_SNP [dm3] 2R_16602360_SNP [dm6]	T	C	3.922e^-4	0.732	INTRON CG8303
3L	7723450	3L_7723450_SNP [dm3] 3L_7730350_SNP [dm6]	A	T	3.922e^-4	0.732	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10807594	3R_10807594_SNP [dm3] 3R_14981872_SNP [dm6]	T	C	3.925e^-4	0.732	INTERGENIC
2R	11327929	2R_11327929_SNP [dm3] 2R_15440424_SNP [dm6]	G	T	3.928e^-4	0.732	INTRON CG43729
3R	10807894	3R_10807894_SNP [dm3] 3R_14982172_SNP [dm6]	G	A	3.931e^-4	0.732	INTERGENIC
2R	7567726	2R_7567726_SNP [dm3] 2R_11680221_SNP [dm6]	C	G	3.932e^-4	0.732	UPSTREAM Roc2 INTRON Buffy	TF binding site mE1_TFBS_inv
2R	16424980	2R_16424980_SNP [dm3] 2R_20537475_SNP [dm6]	G	A	3.932e^-4	0.732	SYNONYMOUS_CODING CG13423
3R	14112769	3R_14112769_DEL [dm3] 3R_18287047_DEL [dm6]	AT	G	3.934e^-4	0.732	DOWNSTREAM CG8064 INTRON CG7131	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17032409	2R_17032409_SNP [dm3] 2R_21144904_SNP [dm6]	T	G	3.940e^-4	0.732	NON_SYNONYMOUS_CODING Xbp1 UTR_3_PRIME Xbp1	TF binding site mE1_TFBS_chinmo
2R	10998491	2R_10998491_SNP [dm3] 2R_15110986_SNP [dm6]	A	G	3.946e^-4	0.732	INTERGENIC
3R	18541072	3R_18541072_SNP [dm3] 3R_22715350_SNP [dm6]	G	T	3.948e^-4	0.732	NON_SYNONYMOUS_CODING wge	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25844889	3R_25844889_SNP [dm3] 3R_30019167_SNP [dm6]	T	C	3.948e^-4	0.732	INTRON Mgat2	TF binding site mE1_TFBS_chinmo
2R	11632839	2R_11632839_SNP [dm3] 2R_15745334_SNP [dm6]	G	A	3.949e^-4	0.732	INTRON CG30089	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18577570	3L_18577570_SNP [dm3] 3L_18584470_SNP [dm6]	A	G	3.953e^-4	0.732	DOWNSTREAM CR45435 INTERGENIC
3R	14342975	3R_14342975_SNP [dm3] 3R_18517253_SNP [dm6]	G	A	3.955e^-4	0.732	INTRON fru
3L	3353317	3L_3353317_SNP [dm3] 3L_3353317_SNP [dm6]	C	A	3.956e^-4	0.732	INTRON kst	TF binding site mE1_TFBS_cad
3L	3353318	3L_3353318_SNP [dm3] 3L_3353318_SNP [dm6]	T	A	3.956e^-4	0.732	INTRON kst	TF binding site mE1_TFBS_cad
2R	20606559	2R_20606559_SNP [dm3] 2R_24719036_SNP [dm6]	C	T	3.967e^-4	0.732	INTRON Mid1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19736215	2L_19736215_SNP [dm3] 2L_19736215_SNP [dm6]	A	G	3.985e^-4	0.732	UPSTREAM CG10462 INTRON Nf-YB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	3179521	X_3179521_SNP [dm3] X_3285488_SNP [dm6]	A	G	3.997e^-4	0.732	INTRON dnc

By genomic position
Variant impact
Gene name

Wing_L1_Vein_Length phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results