DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.048e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.069484
In_3R_Mo	0.008584

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	4.6716	0.0967
In_3R_Mo	10.8504	0.0044

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1925 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	23565299	3R_23565299_DEL [dm3] 3R_27739577_DEL [dm6]	CCATCACCCATGGC...	C	2.779e^-7	0.438	INTRON Ets98B
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	4.827e^-7	0.438	INTRON dnc
X	18454746	X_18454746_INS [dm3] X_18560713_INS [dm6]	A	ACGATGAACA	9.455e^-7	0.438	INTRON Bx
2R	19397731	2R_19397731_SNP [dm3] 2R_23510208_SNP [dm6]	G	A	1.161e^-6	0.438	INTERGENIC
2L	16239804	2L_16239804_SNP [dm3] 2L_16239804_SNP [dm6]	C	T	1.255e^-6	0.438	INTRON CG42817
2R	9136898	2R_9136898_SNP [dm3] 2R_13249393_SNP [dm6]	G	A	1.589e^-6	0.438	SPLICE_SITE_REGION CG4712 DOWNSTREAM Mp20 INTRON CG4712
2R	15874982	2R_15874982_SNP [dm3] 2R_19987477_SNP [dm6]	C	T	1.650e^-6	0.438	INTERGENIC
2R	15874958	2R_15874958_SNP [dm3] 2R_19987453_SNP [dm6]	G	A	1.869e^-6	0.438	INTERGENIC
2L	16239759	2L_16239759_SNP [dm3] 2L_16239759_SNP [dm6]	T	C	3.027e^-6	0.63	INTRON CG42817
2L	16239641	2L_16239641_SNP [dm3] 2L_16239641_SNP [dm6]	T	C	5.444e^-6	0.809	INTRON CG42817
2R	12821148	2R_12821148_SNP [dm3] 2R_16933643_SNP [dm6]	C	T	5.454e^-6	0.809	INTRON Pkc53E	TF binding site BDTNP1_TFBS_twi
3R	10272628	3R_10272628_SNP [dm3] 3R_14446906_SNP [dm6]	C	T	6.108e^-6	0.809	INTRON cv-c
2R	13506075	2R_13506075_SNP [dm3] 2R_17618570_SNP [dm6]	T	G	6.399e^-6	0.809	UPSTREAM CG44403 INTRON CG10936
3L	14057292	3L_14057292_SNP [dm3] 3L_14064192_SNP [dm6]	C	T	6.995e^-6	0.809	INTRON CG32138	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	10272634	3R_10272634_SNP [dm3] 3R_14446912_SNP [dm6]	T	C	7.933e^-6	0.809	INTRON cv-c
3L	6092209	3L_6092209_SNP [dm3] 3L_6099109_SNP [dm6]	T	C	8.808e^-6	0.809	INTRON Ets65A
2R	7076790	2R_7076790_SNP [dm3] 2R_11189285_SNP [dm6]	G	A	8.877e^-6	0.809	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9131372	2R_9131372_SNP [dm3] 2R_13243867_SNP [dm6]	T	C	9.319e^-6	0.809	DOWNSTREAM CR45278 INTERGENIC
2L	3126389	2L_3126389_SNP [dm3] 2L_3126389_SNP [dm6]	C	T	9.522e^-6	0.809	NON_SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	11481430	2R_11481430_SNP [dm3] 2R_15593925_SNP [dm6]	T	C	9.528e^-6	0.809	INTERGENIC
3L	3727650	3L_3727650_SNP [dm3] 3L_3727650_SNP [dm6]	G	C	9.734e^-6	0.809	INTRON CG32264
X	20262267	X_20262267_SNP [dm3] X_20391240_SNP [dm6]	A	G	1.084e^-5	0.809	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1857609	3L_1857609_SNP [dm3] 3L_1857609_SNP [dm6]	A	G	1.118e^-5	0.809	NON_SYNONYMOUS_CODING CG12024	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9131489	2R_9131489_SNP [dm3] 2R_13243984_SNP [dm6]	G	T	1.241e^-5	0.809	DOWNSTREAM CR45278 INTERGENIC
2R	15188574	2R_15188574_DEL [dm3] 2R_19301069_DEL [dm6]	AA	A	1.289e^-5	0.809	INTRON Tab2	TF binding site mE1_TFBS_inv
2L	7100439	2L_7100439_SNP [dm3] 2L_7100439_SNP [dm6]	G	C	1.308e^-5	0.809	SYNONYMOUS_CODING Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	13772991	2R_13772991_SNP [dm3] 2R_17885486_SNP [dm6]	C	T	1.344e^-5	0.809	INTRON Elk
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	1.349e^-5	0.809	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
2L	7100403	2L_7100403_SNP [dm3] 2L_7100403_SNP [dm6]	G	A	1.351e^-5	0.809	SYNONYMOUS_CODING Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	3354928	3L_3354928_SNP [dm3] 3L_3354928_SNP [dm6]	G	T	1.374e^-5	0.809	INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	7076783	2R_7076783_SNP [dm3] 2R_11189278_SNP [dm6]	C	T	1.453e^-5	0.809	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3354934	3L_3354934_SNP [dm3] 3L_3354934_SNP [dm6]	C	T	1.567e^-5	0.809	INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19024797	2R_19024797_SNP [dm3] 2R_23137274_SNP [dm6]	C	T	1.575e^-5	0.809	INTERGENIC
3R	13600672	3R_13600672_SNP [dm3] 3R_17774950_SNP [dm6]	C	T	1.657e^-5	0.809	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20262270	X_20262270_INS [dm3] X_20391243_INS [dm6]	A	ATCAATAATAATTCAA...	1.666e^-5	0.809	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6253803	3L_6253803_SNP [dm3] 3L_6260703_SNP [dm6]	G	A	1.701e^-5	0.809	SYNONYMOUS_CODING ImpL3
2R	4496065	2R_4496065_INS [dm3] 2R_8608560_INS [dm6]	A	ACGA	1.794e^-5	0.809	INTRON rgr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14789737	3R_14789737_INS [dm3] 3R_18964015_INS [dm6]	C	CG	1.812e^-5	0.809	INTRON CG42613 & 1 other
2L	19156440	2L_19156440_SNP [dm3] 2L_19156440_SNP [dm6]	T	C	1.895e^-5	0.809	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	20262315	X_20262315_DEL [dm3] X_20391288_DEL [dm6]	TGATGTTTCTTAT...	T	1.903e^-5	0.809	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12899010	3L_12899010_SNP [dm3] 3L_12905910_SNP [dm6]	T	A	1.910e^-5	0.809	INTERGENIC
3L	12847020	3L_12847020_SNP [dm3] 3L_12853920_SNP [dm6]	C	T	1.916e^-5	0.809	UTR_5_PRIME Ent3 DOWNSTREAM Wbp2
2R	19024800	2R_19024800_SNP [dm3] 2R_23137277_SNP [dm6]	G	A	1.940e^-5	0.809	INTERGENIC
3L	2645866	3L_2645866_SNP [dm3] 3L_2645866_SNP [dm6]	A	G	1.966e^-5	0.809	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19522673	2R_19522673_SNP [dm3] 2R_23635150_SNP [dm6]	G	T	1.998e^-5	0.809	INTRON retn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	9131320	2R_9131320_SNP [dm3] 2R_13243815_SNP [dm6]	T	G	2.055e^-5	0.809	DOWNSTREAM CR45278 INTERGENIC
2L	1915959	2L_1915959_SNP [dm3] 2L_1915959_SNP [dm6]	A	G	2.057e^-5	0.809	INTRON CG7337
2R	9131495	2R_9131495_SNP [dm3] 2R_13243990_SNP [dm6]	G	T	2.152e^-5	0.809	DOWNSTREAM CR45278 INTERGENIC
2L	16081880	2L_16081880_SNP [dm3] 2L_16081880_SNP [dm6]	C	A	2.206e^-5	0.809	DOWNSTREAM beat-Ia INTERGENIC
3L	12846891	3L_12846891_SNP [dm3] 3L_12853791_SNP [dm6]	T	C	2.217e^-5	0.809	UTR_5_PRIME Ent3 DOWNSTREAM Wbp2
2R	9131432	2R_9131432_SNP [dm3] 2R_13243927_SNP [dm6]	T	C	2.271e^-5	0.809	DOWNSTREAM CR45278 INTERGENIC
X	22253518	X_22253518_SNP [dm3] X_22851682_SNP [dm6]	G	T	2.282e^-5	0.809	INTRON fog & 1 other
2R	18649804	2R_18649804_DEL [dm3] 2R_22762299_DEL [dm6]	CATATTGACC	C	2.300e^-5	0.809	INTRON CG42260	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	8113188	X_8113188_SNP [dm3] X_8219155_SNP [dm6]	C	T	2.357e^-5	0.809	INTRON sdt	TF binding site BDTNP1_TFBS_dl
3R	5121979	3R_5121979_SNP [dm3] 3R_9296257_SNP [dm6]	T	G	2.427e^-5	0.809	INTRON CG8861
2L	4624701	2L_4624701_SNP [dm3] 2L_4624701_SNP [dm6]	C	T	2.477e^-5	0.809	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18649908	2R_18649908_SNP [dm3] 2R_22762403_SNP [dm6]	A	G	2.488e^-5	0.809	INTRON CG42260	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3354875	3L_3354875_INS [dm3] 3L_3354875_INS [dm6]	G	GTCTG	2.528e^-5	0.809	INTRON kst	TF binding site mE1_TFBS_cad
2R	8338654	2R_8338654_SNP [dm3] 2R_12451149_SNP [dm6]	C	A	2.579e^-5	0.809	SYNONYMOUS_CODING Dyb INTRON Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	16129663	X_16129663_SNP [dm3] X_16235630_SNP [dm6]	G	A	2.642e^-5	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	6092697	3L_6092697_SNP [dm3] 3L_6099597_SNP [dm6]	T	C	2.716e^-5	0.809	INTRON Ets65A
3L	13450773	3L_13450773_SNP [dm3] 3L_13457673_SNP [dm6]	A	G	2.733e^-5	0.809	UPSTREAM CG10116 INTRON CG10738	TF binding site mE1_TFBS_cad
2R	15884106	2R_15884106_SNP [dm3] 2R_19996601_SNP [dm6]	G	C	2.821e^-5	0.809	INTERGENIC
X	20156695	X_20156695_SNP [dm3] X_20285668_SNP [dm6]	A	T	2.964e^-5	0.809	INTERGENIC
3R	25103105	3R_25103105_SNP [dm3] 3R_29277383_SNP [dm6]	A	G	2.971e^-5	0.809	UPSTREAM CR45568 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
3L	1722831	3L_1722831_SNP [dm3] 3L_1722831_SNP [dm6]	C	T	3.001e^-5	0.809	SYNONYMOUS_CODING CG18171 INTRON drpr
3L	3354923	3L_3354923_SNP [dm3] 3L_3354923_SNP [dm6]	T	A	3.103e^-5	0.809	INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	6092236	3L_6092236_SNP [dm3] 3L_6099136_SNP [dm6]	T	C	3.129e^-5	0.809	INTRON Ets65A
2R	9131300	2R_9131300_SNP [dm3] 2R_13243795_SNP [dm6]	A	T	3.354e^-5	0.809	DOWNSTREAM CR45278 INTERGENIC
3L	86063	3L_86063_SNP [dm3] 3L_86063_SNP [dm6]	T	A	3.371e^-5	0.809	INTERGENIC
X	935094	X_935094_SNP [dm3] X_1041061_SNP [dm6]	G	A	3.398e^-5	0.809	UTR_5_PRIME su_w[a]_ INTRON su_w[a]_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_ttk
3L	312104	3L_312104_SNP [dm3] 3L_312104_SNP [dm6]	C	T	3.451e^-5	0.809	UPSTREAM fwd INTRON fwd	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	9131375	2R_9131375_SNP [dm3] 2R_13243870_SNP [dm6]	G	A	3.494e^-5	0.809	DOWNSTREAM CR45278 INTERGENIC
3L	8547757	3L_8547757_SNP [dm3] 3L_8554657_SNP [dm6]	A	T	3.525e^-5	0.809	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2649575	3L_2649575_SNP [dm3] 3L_2649575_SNP [dm6]	A	G	3.543e^-5	0.809	NON_SYNONYMOUS_CODING CG1246 DOWNSTREAM Aats-pro
3L	6092278	3L_6092278_SNP [dm3] 3L_6099178_SNP [dm6]	T	G	3.580e^-5	0.809	INTRON Ets65A
3R	10614051	3R_10614051_SNP [dm3] 3R_14788329_SNP [dm6]	G	A	3.660e^-5	0.809	SYNONYMOUS_CODING jvl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2651959	3L_2651959_SNP [dm3] 3L_2651959_SNP [dm6]	A	T	3.692e^-5	0.809	UPSTREAM Snup & 2 others INTERGENIC
3L	14388889	3L_14388889_SNP [dm3] 3L_14395789_SNP [dm6]	G	A	3.694e^-5	0.809	INTERGENIC
3L	2649565	3L_2649565_SNP [dm3] 3L_2649565_SNP [dm6]	A	G	3.718e^-5	0.809	SYNONYMOUS_CODING CG1246 DOWNSTREAM Aats-pro
2R	10998617	2R_10998617_SNP [dm3] 2R_15111112_SNP [dm6]	C	T	3.765e^-5	0.809	INTERGENIC
3L	12033758	3L_12033758_SNP [dm3] 3L_12040658_SNP [dm6]	G	T	3.767e^-5	0.809	INTRON rols
3L	6092239	3L_6092239_SNP [dm3] 3L_6099139_SNP [dm6]	A	G	3.780e^-5	0.809	INTRON Ets65A
3R	14789766	3R_14789766_SNP [dm3] 3R_18964044_SNP [dm6]	G	C	3.798e^-5	0.809	INTRON CG42613 & 1 other
X	20156719	X_20156719_SNP [dm3] X_20285692_SNP [dm6]	G	A	3.810e^-5	0.809	INTERGENIC
2L	13948455	2L_13948455_SNP [dm3] 2L_13948455_SNP [dm6]	G	A	3.915e^-5	0.809	UPSTREAM CG16884 INTRON Ance-3
X	19572577	X_19572577_SNP [dm3] X_19678544_SNP [dm6]	G	A	3.962e^-5	0.809	SYNONYMOUS_CODING dome	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16303177	2R_16303177_SNP [dm3] 2R_20415672_SNP [dm6]	C	T	3.983e^-5	0.809	INTERGENIC
2L	2735393	2L_2735393_SNP [dm3] 2L_2735393_SNP [dm6]	C	A	4.059e^-5	0.809	UPSTREAM CG31689 INTRON CG31689
X	7514597	X_7514597_SNP [dm3] X_7620564_SNP [dm6]	C	T	4.076e^-5	0.809	INTRON ct	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7077042	2R_7077042_SNP [dm3] 2R_11189537_SNP [dm6]	T	A	4.092e^-5	0.809	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3L	21749203	3L_21749203_SNP [dm3] 3L_21756103_SNP [dm6]	C	A	4.158e^-5	0.809	INTRON Syn1	TF binding site mE1_TFBS_chinmo
3R	24708824	3R_24708824_SNP [dm3] 3R_28883102_SNP [dm6]	T	C	4.174e^-5	0.809	UPSTREAM CG14526 DOWNSTREAM CG14527 INTRON CG33203
X	18691722	X_18691722_SNP [dm3] X_18797689_SNP [dm6]	A	T	4.183e^-5	0.809	UPSTREAM bnb INTRON Pk17E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6092172	3L_6092172_SNP [dm3] 3L_6099072_SNP [dm6]	A	C	4.208e^-5	0.809	INTRON Ets65A
3R	15951331	3R_15951331_SNP [dm3] 3R_20125609_SNP [dm6]	C	T	4.255e^-5	0.809	INTERGENIC
3L	17633388	3L_17633388_SNP [dm3] 3L_17640288_SNP [dm6]	A	G	4.332e^-5	0.809	INTRON Pep	TF binding site mE1_TFBS_cad
2R	15883771	2R_15883771_SNP [dm3] 2R_19996266_SNP [dm6]	G	A	4.353e^-5	0.809	INTERGENIC
3L	7296139	3L_7296139_DEL [dm3] 3L_7303039_DEL [dm6]	AA	A	4.391e^-5	0.809	INTRON unc-13-4A
2L	13610291	2L_13610291_SNP [dm3] 2L_13610291_SNP [dm6]	C	T	4.401e^-5	0.809	NON_SYNONYMOUS_CODING kuz DOWNSTREAM mir-2489
3R	23900096	3R_23900096_SNP [dm3] 3R_28074374_SNP [dm6]	T	G	4.464e^-5	0.809	INTRON CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9131331	2R_9131331_SNP [dm3] 2R_13243826_SNP [dm6]	A	C	4.477e^-5	0.809	DOWNSTREAM CR45278 INTERGENIC
3L	2649550	3L_2649550_SNP [dm3] 3L_2649550_SNP [dm6]	G	T	4.589e^-5	0.809	SYNONYMOUS_CODING CG1246 DOWNSTREAM Aats-pro
2R	9131294	2R_9131294_SNP [dm3] 2R_13243789_SNP [dm6]	A	C	4.617e^-5	0.809	DOWNSTREAM CR45278 INTERGENIC
2R	13195904	2R_13195904_SNP [dm3] 2R_17308399_SNP [dm6]	G	A	4.638e^-5	0.809	INTRON mbl
2R	9131332	2R_9131332_SNP [dm3] 2R_13243827_SNP [dm6]	G	T	4.793e^-5	0.809	DOWNSTREAM CR45278 INTERGENIC
2R	16289150	2R_16289150_SNP [dm3] 2R_20401645_SNP [dm6]	G	A	4.852e^-5	0.809	INTERGENIC
3L	9932477	3L_9932477_SNP [dm3] 3L_9939377_SNP [dm6]	A	G	4.930e^-5	0.809	INTRON CG34356
2R	16052969	2R_16052969_SNP [dm3] 2R_20165464_SNP [dm6]	T	A	5.027e^-5	0.809	INTERGENIC
2R	10998491	2R_10998491_SNP [dm3] 2R_15110986_SNP [dm6]	A	G	5.155e^-5	0.809	INTERGENIC
3L	6253710	3L_6253710_SNP [dm3] 3L_6260610_SNP [dm6]	C	T	5.245e^-5	0.809	SYNONYMOUS_CODING ImpL3
2R	16837257	2R_16837257_SNP [dm3] 2R_20949752_SNP [dm6]	C	T	5.264e^-5	0.809	UPSTREAM CG33704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18917905	2R_18917905_SNP [dm3] 2R_23030382_SNP [dm6]	T	C	5.267e^-5	0.809	INTRON twi & 1 other
2R	4945841	2R_4945841_SNP [dm3] 2R_9058336_SNP [dm6]	T	A	5.285e^-5	0.809	INTRON CG13743
3L	6092260	3L_6092260_SNP [dm3] 3L_6099160_SNP [dm6]	T	G	5.398e^-5	0.809	INTRON Ets65A
3L	8546733	3L_8546733_SNP [dm3] 3L_8553633_SNP [dm6]	G	A	5.426e^-5	0.809	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5969334	3L_5969334_SNP [dm3] 3L_5976234_SNP [dm6]	G	A	5.449e^-5	0.809	UPSTREAM CG10479 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9131453	2R_9131453_SNP [dm3] 2R_13243948_SNP [dm6]	A	C	5.538e^-5	0.809	DOWNSTREAM CR45278 INTERGENIC
3L	6092182	3L_6092182_SNP [dm3] 3L_6099082_SNP [dm6]	C	G	5.548e^-5	0.809	INTRON Ets65A
3R	20883751	3R_20883751_SNP [dm3] 3R_25058029_SNP [dm6]	T	C	5.568e^-5	0.809	INTRON Unc-13-4B
3R	5121954	3R_5121954_SNP [dm3] 3R_9296232_SNP [dm6]	A	G	5.639e^-5	0.809	INTRON CG8861
X	1192808	X_1192808_SNP [dm3] X_1298775_SNP [dm6]	C	A	5.703e^-5	0.809	UPSTREAM CG32811 INTRON DAAM	TF binding site mE1_TFBS_chinmo
3R	16226120	3R_16226120_SNP [dm3] 3R_20400398_SNP [dm6]	G	A	5.754e^-5	0.809	UTR_3_PRIME Gfrl INTRON Gfrl
3R	4385222	3R_4385222_SNP [dm3] 3R_8559500_SNP [dm6]	C	A	5.777e^-5	0.809	DOWNSTREAM pch2 INTERGENIC
X	20272005	X_20272005_SNP [dm3] X_20400978_SNP [dm6]	A	T	5.824e^-5	0.809	SYNONYMOUS_CODING HERC2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12930457	2L_12930457_SNP [dm3] 2L_12930457_SNP [dm6]	G	A	5.854e^-5	0.809	DOWNSTREAM ACXE INTERGENIC
X	1191641	X_1191641_SNP [dm3] X_1297608_SNP [dm6]	C	A	5.884e^-5	0.809	DOWNSTREAM CG32811 INTRON DAAM	TF binding site mE1_TFBS_chinmo
3L	6092254	3L_6092254_SNP [dm3] 3L_6099154_SNP [dm6]	A	T	5.891e^-5	0.809	INTRON Ets65A
2R	8360568	2R_8360568_SNP [dm3] 2R_12473063_SNP [dm6]	A	G	5.907e^-5	0.809	SYNONYMOUS_CODING CG8550
2R	10998554	2R_10998554_INS [dm3] 2R_15111049_INS [dm6]	A	ACCATAAGAACCACTAATGG...	5.931e^-5	0.809	INTERGENIC
3L	8548292	3L_8548292_SNP [dm3] 3L_8555192_SNP [dm6]	A	G	6.021e^-5	0.809	INTRON rhea	TF binding site BDTNP1_TFBS_twi
3R	11008848	3R_11008848_SNP [dm3] 3R_15183126_SNP [dm6]	A	T	6.026e^-5	0.809	INTRON Gyc88E
2L	8558261	2L_8558261_DEL [dm3] 2L_8558261_DEL [dm6]	ACAT	A	6.027e^-5	0.809	INTRON Sema-1a	TF binding site mE1_TFBS_cad
3R	13913861	3R_13913861_SNP [dm3] 3R_18088139_SNP [dm6]	G	A	6.072e^-5	0.809	INTERGENIC
2R	9808407	2R_9808407_DEL [dm3] 2R_13920902_DEL [dm6]	CACC	C	6.074e^-5	0.809	INTRON shot
2R	18952468	2R_18952468_SNP [dm3] 2R_23064945_SNP [dm6]	C	G	6.080e^-5	0.809	SYNONYMOUS_CODING PPO3 UPSTREAM CG9890	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	6254972	3L_6254972_SNP [dm3] 3L_6261872_SNP [dm6]	G	A	6.085e^-5	0.809	UPSTREAM ImpL3 INTRON ImpL3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1381522	2L_1381522_SNP [dm3] 2L_1381522_SNP [dm6]	T	C	6.149e^-5	0.809	SYNONYMOUS_CODING lea UTR_3_PRIME lea UPSTREAM CR44898 EXON CR44897	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	9131327	2R_9131327_SNP [dm3] 2R_13243822_SNP [dm6]	G	A	6.172e^-5	0.809	DOWNSTREAM CR45278 INTERGENIC
X	10413834	X_10413834_SNP [dm3] X_10519801_SNP [dm6]	A	G	6.233e^-5	0.809	INTRON spri
2L	21323904	2L_21323904_SNP [dm3] 2L_21323904_SNP [dm6]	A	G	6.255e^-5	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10808361	3R_10808361_SNP [dm3] 3R_14982639_SNP [dm6]	C	A	6.275e^-5	0.809	INTERGENIC
X	20218269	X_20218269_SNP [dm3] X_20347242_SNP [dm6]	C	A	6.355e^-5	0.809	INTERGENIC
3R	19444381	3R_19444381_SNP [dm3] 3R_23618659_SNP [dm6]	T	C	6.359e^-5	0.809	INTRON CG31145	TF binding site mE1_TFBS_chinmo
3L	4152861	3L_4152861_SNP [dm3] 3L_4152861_SNP [dm6]	G	A	6.406e^-5	0.809	DOWNSTREAM CG1299 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7100238	2L_7100238_INS [dm3] 2L_7100238_INS [dm6]	G	GG	6.415e^-5	0.809	INTRON Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	6092142	3L_6092142_SNP [dm3] 3L_6099042_SNP [dm6]	A	G	6.418e^-5	0.809	INTRON Ets65A
3L	6256631	3L_6256631_SNP [dm3] 3L_6263531_SNP [dm6]	A	G	6.429e^-5	0.809	UPSTREAM ImpL3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	4675443	2R_4675443_SNP [dm3] 2R_8787938_SNP [dm6]	A	G	6.455e^-5	0.809	INTERGENIC
2R	15733645	2R_15733645_SNP [dm3] 2R_19846140_SNP [dm6]	C	G	6.561e^-5	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	16239794	2L_16239794_SNP [dm3] 2L_16239794_SNP [dm6]	A	T	6.567e^-5	0.809	INTRON CG42817
X	1174827	X_1174827_SNP [dm3] X_1280794_SNP [dm6]	G	A	6.597e^-5	0.809	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	10998493	2R_10998493_SNP [dm3] 2R_15110988_SNP [dm6]	A	G	6.628e^-5	0.809	INTERGENIC
2L	1139886	2L_1139886_SNP [dm3] 2L_1139886_SNP [dm6]	A	G	6.649e^-5	0.809	NON_SYNONYMOUS_CODING CG4577	TF binding site mE1_TFBS_cad
3R	18401814	3R_18401814_SNP [dm3] 3R_22576092_SNP [dm6]	T	C	6.697e^-5	0.81	INTRON CG33110
2R	12539421	2R_12539421_SNP [dm3] 2R_16651916_SNP [dm6]	G	A	6.775e^-5	0.811	SYNONYMOUS_CODING Amyrel DOWNSTREAM gprs	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17836620	2R_17836620_SNP [dm3] 2R_21949115_SNP [dm6]	C	T	6.799e^-5	0.811	INTERGENIC
X	3375366	X_3375366_SNP [dm3] X_3481333_SNP [dm6]	T	A	6.900e^-5	0.811	START_GAINED CG10804 UTR_5_PRIME CG10804 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	17527864	2R_17527864_SNP [dm3] 2R_21640359_SNP [dm6]	A	G	6.905e^-5	0.811	INTERGENIC
2L	13948457	2L_13948457_SNP [dm3] 2L_13948457_SNP [dm6]	A	G	6.923e^-5	0.811	UPSTREAM CG16884 INTRON Ance-3
3L	2645997	3L_2645997_SNP [dm3] 3L_2645997_SNP [dm6]	G	T	7.067e^-5	0.818	NON_SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20259404	X_20259404_SNP [dm3] X_20388377_SNP [dm6]	T	C	7.071e^-5	0.818	INTERGENIC
3R	20883796	3R_20883796_SNP [dm3] 3R_25058074_SNP [dm6]	T	A	7.253e^-5	0.82	INTRON Unc-13-4B
2L	12930553	2L_12930553_SNP [dm3] 2L_12930553_SNP [dm6]	G	A	7.254e^-5	0.82	UPSTREAM CR44183 DOWNSTREAM ACXE INTERGENIC
3L	1858016	3L_1858016_SNP [dm3] 3L_1858016_SNP [dm6]	A	G	7.255e^-5	0.82	SYNONYMOUS_CODING CG12024	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14730019	2L_14730019_SNP [dm3] 2L_14730019_SNP [dm6]	T	C	7.264e^-5	0.82	UTR_5_PRIME CG42685
3R	20883786	3R_20883786_SNP [dm3] 3R_25058064_SNP [dm6]	A	T	7.407e^-5	0.832	INTRON Unc-13-4B
3L	6255006	3L_6255006_SNP [dm3] 3L_6261906_SNP [dm6]	G	C	7.634e^-5	0.842	UPSTREAM ImpL3 INTRON ImpL3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20883755	3R_20883755_SNP [dm3] 3R_25058033_SNP [dm6]	C	T	7.768e^-5	0.842	INTRON Unc-13-4B
3L	10923261	3L_10923261_SNP [dm3] 3L_10930161_SNP [dm6]	C	T	7.815e^-5	0.842	INTERGENIC
X	15291616	X_15291616_SNP [dm3] X_15397583_SNP [dm6]	G	A	7.836e^-5	0.842	SPLICE_SITE_REGION Cngl INTRON Cngl	TF binding site mE1_TFBS_chinmo
3L	2683655	3L_2683655_SNP [dm3] 3L_2683655_SNP [dm6]	A	G	7.956e^-5	0.842	INTRON Fife
2R	10998512	2R_10998512_SNP [dm3] 2R_15111007_SNP [dm6]	G	T	7.958e^-5	0.842	INTERGENIC
2L	12332237	2L_12332237_SNP [dm3] 2L_12332237_SNP [dm6]	T	G	8.090e^-5	0.842	INTERGENIC
3L	14385310	3L_14385310_INS [dm3] 3L_14392210_INS [dm6]	T	TGCTCTTAA	8.181e^-5	0.842	INTERGENIC
3R	27189510	3R_27189510_SNP [dm3] 3R_31363788_SNP [dm6]	C	T	8.194e^-5	0.842	INTRON CG34347
3R	27189648	3R_27189648_SNP [dm3] 3R_31363926_SNP [dm6]	C	T	8.194e^-5	0.842	INTRON CG34347
3R	27189682	3R_27189682_SNP [dm3] 3R_31363960_SNP [dm6]	A	T	8.194e^-5	0.842	INTRON CG34347
3L	6254991	3L_6254991_SNP [dm3] 3L_6261891_SNP [dm6]	T	C	8.200e^-5	0.842	UPSTREAM ImpL3 INTRON ImpL3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10998501	2R_10998501_SNP [dm3] 2R_15110996_SNP [dm6]	T	G	8.204e^-5	0.842	INTERGENIC
2R	19408576	2R_19408576_SNP [dm3] 2R_23521053_SNP [dm6]	C	T	8.208e^-5	0.842	INTRON RabX1
3L	22905235	3L_22905235_SNP [dm3] 3L_22912135_SNP [dm6]	G	A	8.269e^-5	0.842	SYNONYMOUS_CODING CG12768	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2202502	3L_2202502_SNP [dm3] 3L_2202502_SNP [dm6]	C	T	8.279e^-5	0.842	INTERGENIC
3L	6254094	3L_6254094_SNP [dm3] 3L_6260994_SNP [dm6]	C	T	8.329e^-5	0.842	UTR_5_PRIME ImpL3 INTRON ImpL3
3L	3354918	3L_3354918_SNP [dm3] 3L_3354918_SNP [dm6]	A	C	8.507e^-5	0.842	INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	15567733	X_15567733_SNP [dm3] X_15673700_SNP [dm6]	T	C	8.554e^-5	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	62694	3L_62694_SNP [dm3] 3L_62694_SNP [dm6]	C	G	8.577e^-5	0.842	INTERGENIC
3L	6254943	3L_6254943_SNP [dm3] 3L_6261843_SNP [dm6]	C	T	8.579e^-5	0.842	UPSTREAM ImpL3 INTRON ImpL3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13913013	3R_13913013_SNP [dm3] 3R_18087291_SNP [dm6]	A	T	8.592e^-5	0.842	INTERGENIC
X	5702342	X_5702342_SNP [dm3] X_5808309_SNP [dm6]	G	A	8.607e^-5	0.842	UPSTREAM Prosbeta2R1 INTERGENIC
3L	3090995	3L_3090995_SNP [dm3] 3L_3090995_SNP [dm6]	C	T	8.617e^-5	0.842	UTR_3_PRIME Cht7 DOWNSTREAM CG11486 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	25308683	3R_25308683_SNP [dm3] 3R_29482961_SNP [dm6]	G	C	8.657e^-5	0.842	SYNONYMOUS_CODING Ptp99A	TF binding site mE1_TFBS_cad
3L	1727047	3L_1727047_SNP [dm3] 3L_1727047_SNP [dm6]	G	A	8.733e^-5	0.842	INTRON drpr
3R	13913199	3R_13913199_SNP [dm3] 3R_18087477_SNP [dm6]	C	T	8.745e^-5	0.842	INTERGENIC
2R	19408521	2R_19408521_SNP [dm3] 2R_23520998_SNP [dm6]	T	C	8.847e^-5	0.842	INTRON RabX1
2R	9136867	2R_9136867_SNP [dm3] 2R_13249362_SNP [dm6]	A	C	8.856e^-5	0.842	DOWNSTREAM Mp20 INTRON CG4712
X	12907914	X_12907914_SNP [dm3] X_13013881_SNP [dm6]	C	T	8.945e^-5	0.842	INTRON rad
2L	2301983	2L_2301983_SNP [dm3] 2L_2301983_SNP [dm6]	C	A	9.005e^-5	0.842	INTERGENIC
2R	7074624	2R_7074624_SNP [dm3] 2R_11187119_SNP [dm6]	A	G	9.201e^-5	0.842	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	3844410	3L_3844410_SNP [dm3] 3L_3844410_SNP [dm6]	A	G	9.213e^-5	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
3R	20918149	3R_20918149_SNP [dm3] 3R_25092427_SNP [dm6]	A	G	9.237e^-5	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5185243	3R_5185243_SNP [dm3] 3R_9359521_SNP [dm6]	T	C	9.374e^-5	0.842	UTR_3_PRIME CG45050 DOWNSTREAM CG45050 & 1 other
2L	21785498	2L_21785498_SNP [dm3] 2L_21785498_SNP [dm6]	A	T	9.388e^-5	0.842	INTRON CG31612
2R	17788103	2R_17788103_SNP [dm3] 2R_21900598_SNP [dm6]	C	T	9.402e^-5	0.842	INTRON Fili	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16867144	3R_16867144_DEL [dm3] 3R_21041422_DEL [dm6]	CAATTGTC	C	9.468e^-5	0.842	INTRON Dhc93AB	TF binding site mE1_TFBS_cad
3R	20883791	3R_20883791_SNP [dm3] 3R_25058069_SNP [dm6]	T	A	9.479e^-5	0.842	INTRON Unc-13-4B
X	2926031	X_2926031_SNP [dm3] X_3031998_SNP [dm6]	C	A	9.524e^-5	0.842	INTRON kirre
X	1174853	X_1174853_SNP [dm3] X_1280820_SNP [dm6]	A	G	9.553e^-5	0.842	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	6255036	3L_6255036_SNP [dm3] 3L_6261936_SNP [dm6]	T	G	9.554e^-5	0.842	UPSTREAM ImpL3 INTRON ImpL3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2202501	3L_2202501_SNP [dm3] 3L_2202501_SNP [dm6]	T	A	9.565e^-5	0.842	INTERGENIC
2L	13948437	2L_13948437_SNP [dm3] 2L_13948437_SNP [dm6]	G	A	9.589e^-5	0.842	UPSTREAM CG16884 INTRON Ance-3
2L	13948410	2L_13948410_SNP [dm3] 2L_13948410_SNP [dm6]	A	T	9.701e^-5	0.842	UPSTREAM CG16884 INTRON Ance-3
2R	17548734	2R_17548734_SNP [dm3] 2R_21661229_SNP [dm6]	T	C	9.859e^-5	0.842	UTR_3_PRIME pirk
3L	3361596	3L_3361596_SNP [dm3] 3L_3361596_SNP [dm6]	C	A	9.861e^-5	0.842	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
3R	5121977	3R_5121977_SNP [dm3] 3R_9296255_SNP [dm6]	A	T	9.876e^-5	0.842	INTRON CG8861
3L	3353317	3L_3353317_SNP [dm3] 3L_3353317_SNP [dm6]	C	A	9.961e^-5	0.842	INTRON kst	TF binding site mE1_TFBS_cad
3L	3353318	3L_3353318_SNP [dm3] 3L_3353318_SNP [dm6]	T	A	9.961e^-5	0.842	INTRON kst	TF binding site mE1_TFBS_cad
3L	14385798	3L_14385798_INS [dm3] 3L_14392698_INS [dm6]	G	GC	1.009e^-4	0.842	INTERGENIC
3R	10808271	3R_10808271_SNP [dm3] 3R_14982549_SNP [dm6]	C	T	1.011e^-4	0.842	INTERGENIC
3L	12836573	3L_12836573_SNP [dm3] 3L_12843473_SNP [dm6]	C	T	1.013e^-4	0.842	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9726723	2L_9726723_SNP [dm3] 2L_9726723_SNP [dm6]	T	G	1.022e^-4	0.842	INTRON Nckx30C
2L	9726724	2L_9726724_SNP [dm3] 2L_9726724_SNP [dm6]	T	C	1.022e^-4	0.842	INTRON Nckx30C
2L	12148371	2L_12148371_SNP [dm3] 2L_12148371_SNP [dm6]	T	A	1.026e^-4	0.842	INTRON CG31760
X	3380974	X_3380974_SNP [dm3] X_3486941_SNP [dm6]	G	A	1.029e^-4	0.842	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3381085	X_3381085_SNP [dm3] X_3487052_SNP [dm6]	G	C	1.029e^-4	0.842	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12718574	X_12718574_SNP [dm3] X_12824541_SNP [dm6]	G	C	1.031e^-4	0.842	INTRON Pde9
2R	15180405	2R_15180405_SNP [dm3] 2R_19292900_SNP [dm6]	C	T	1.033e^-4	0.842	UPSTREAM mip40 INTRON Tab2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	796590	3L_796590_SNP [dm3] 3L_796590_SNP [dm6]	A	G	1.035e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	4350031	3L_4350031_SNP [dm3] 3L_4350031_SNP [dm6]	G	T	1.037e^-4	0.842	INTRON Cip4
3L	11390008	3L_11390008_SNP [dm3] 3L_11396908_SNP [dm6]	T	G	1.044e^-4	0.842	UPSTREAM CG44362 INTERGENIC
3R	13600157	3R_13600157_SNP [dm3] 3R_17774435_SNP [dm6]	T	G	1.048e^-4	0.842	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3R	2918310	3R_2918310_SNP [dm3] 3R_7092588_SNP [dm6]	A	C	1.058e^-4	0.842	EXON CR43685	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2R	8987454	2R_8987454_SNP [dm3] 2R_13099949_SNP [dm6]	A	C	1.060e^-4	0.842	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	19143020	2L_19143020_SNP [dm3] 2L_19143020_SNP [dm6]	G	T	1.063e^-4	0.842	INTRON brat	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10998606	2R_10998606_SNP [dm3] 2R_15111101_SNP [dm6]	A	C	1.065e^-4	0.842	INTERGENIC
2R	10998641	2R_10998641_SNP [dm3] 2R_15111136_SNP [dm6]	A	C	1.065e^-4	0.842	INTERGENIC
2R	7065817	2R_7065817_SNP [dm3] 2R_11178312_SNP [dm6]	T	C	1.066e^-4	0.842	INTRON shn	TF binding site mE1_TFBS_inv
2L	5294088	2L_5294088_SNP [dm3] 2L_5294088_SNP [dm6]	G	T	1.068e^-4	0.842	INTRON vri	TF binding site BDTNP1_TFBS_dl
2R	6558764	2R_6558764_SNP [dm3] 2R_10671259_SNP [dm6]	G	A	1.076e^-4	0.844	INTERGENIC
3L	22890158	3L_22890158_SNP [dm3] 3L_22897058_SNP [dm6]	C	A	1.087e^-4	0.847	DOWNSTREAM CR44688 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	4596035	2L_4596035_SNP [dm3] 2L_4596035_SNP [dm6]	T	A	1.088e^-4	0.847	UPSTREAM dp INTRON dp	TF binding site mE1_TFBS_HSA
3R	27189442	3R_27189442_DEL [dm3] 3R_31363720_DEL [dm6]	TGAAAA	T	1.097e^-4	0.848	INTRON CG34347
X	20262202	X_20262202_SNP [dm3] X_20391175_SNP [dm6]	C	A	1.100e^-4	0.848	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7040499	2R_7040499_SNP [dm3] 2R_11152994_SNP [dm6]	G	C	1.107e^-4	0.848	INTRON CG13229
2R	15180312	2R_15180312_SNP [dm3] 2R_19292807_SNP [dm6]	A	T	1.108e^-4	0.848	UTR_5_PRIME Tab2 UPSTREAM mip40	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	15002546	2R_15002546_SNP [dm3] 2R_19115041_SNP [dm6]	T	C	1.122e^-4	0.848	INTRON 5-HT1A
3R	25286489	3R_25286489_SNP [dm3] 3R_29460767_SNP [dm6]	G	A	1.125e^-4	0.848	INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	17455708	3R_17455708_SNP [dm3] 3R_21629986_SNP [dm6]	G	T	1.145e^-4	0.848	INTRON E2f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	12544954	2R_12544954_SNP [dm3] 2R_16657449_SNP [dm6]	G	C	1.156e^-4	0.848	INTRON Picot
2R	18818329	2R_18818329_SNP [dm3] 2R_22930806_SNP [dm6]	G	A	1.159e^-4	0.848	NON_SYNONYMOUS_CODING CG42678 INTRON CG42678	TF binding site mE1_TFBS_inv
2R	15351654	2R_15351654_SNP [dm3] 2R_19464149_SNP [dm6]	C	T	1.161e^-4	0.848	INTRON par-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	8547748	3L_8547748_SNP [dm3] 3L_8554648_SNP [dm6]	G	T	1.163e^-4	0.848	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12718677	X_12718677_SNP [dm3] X_12824644_SNP [dm6]	G	C	1.163e^-4	0.848	INTRON Pde9
3L	411206	3L_411206_INS [dm3] 3L_411206_INS [dm6]	C	CA	1.177e^-4	0.848	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2302005	2L_2302005_SNP [dm3] 2L_2302005_SNP [dm6]	C	G	1.185e^-4	0.848	INTERGENIC
X	12234675	X_12234675_SNP [dm3] X_12340642_SNP [dm6]	C	T	1.191e^-4	0.848	INTERGENIC
2L	3748124	2L_3748124_SNP [dm3] 2L_3748124_SNP [dm6]	C	A	1.192e^-4	0.848	INTRON CG10019
3L	13449558	3L_13449558_SNP [dm3] 3L_13456458_SNP [dm6]	G	T	1.196e^-4	0.848	NON_SYNONYMOUS_CODING CG10116 INTRON CG10738	TF binding site mE1_TFBS_cad
3L	6252879	3L_6252879_SNP [dm3] 3L_6259779_SNP [dm6]	G	T	1.198e^-4	0.848	SYNONYMOUS_CODING ImpL3
3L	6254060	3L_6254060_DEL [dm3] 3L_6260960_DEL [dm6]	CT	C	1.198e^-4	0.848	INTRON ImpL3
3L	3731073	3L_3731073_SNP [dm3] 3L_3731073_SNP [dm6]	A	C	1.203e^-4	0.848	INTRON CG32264
2L	4205206	2L_4205206_SNP [dm3] 2L_4205206_SNP [dm6]	T	C	1.209e^-4	0.848	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17500763	2R_17500763_SNP [dm3] 2R_21613258_SNP [dm6]	G	C	1.210e^-4	0.848	UPSTREAM CG15673 DOWNSTREAM CG18870 INTERGENIC
2R	17328344	2R_17328344_DEL [dm3] 2R_21440839_DEL [dm6]	GGA	C	1.211e^-4	0.848	INTRON Sdc
3L	14383954	3L_14383954_SNP [dm3] 3L_14390854_SNP [dm6]	T	A	1.212e^-4	0.848	INTERGENIC
3L	12899041	3L_12899041_SNP [dm3] 3L_12905941_SNP [dm6]	A	G	1.213e^-4	0.848	INTERGENIC
2R	254918	2R_254918_SNP [dm3] 2R_4367413_SNP [dm6]	C	T	1.218e^-4	0.848	INTRON Gprk1
2L	13985827	2L_13985827_SNP [dm3] 2L_13985827_SNP [dm6]	C	T	1.219e^-4	0.848	SYNONYMOUS_CODING rk
2R	9138301	2R_9138301_SNP [dm3] 2R_13250796_SNP [dm6]	A	T	1.227e^-4	0.848	NON_SYNONYMOUS_CODING CG4712
3L	1708679	3L_1708679_SNP [dm3] 3L_1708679_SNP [dm6]	T	C	1.231e^-4	0.848	INTRON CG7991
X	1175065	X_1175065_SNP [dm3] X_1281032_SNP [dm6]	G	A	1.236e^-4	0.848	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	20156725	X_20156725_SNP [dm3] X_20285698_SNP [dm6]	A	G	1.239e^-4	0.848	INTERGENIC
3L	6256244	3L_6256244_SNP [dm3] 3L_6263144_SNP [dm6]	T	A	1.241e^-4	0.848	UPSTREAM ImpL3 EXON CR44522	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7074649	2R_7074649_SNP [dm3] 2R_11187144_SNP [dm6]	G	A	1.243e^-4	0.848	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	16690218	X_16690218_SNP [dm3] X_16796185_SNP [dm6]	T	C	1.244e^-4	0.848	UTR_3_PRIME CG4768 DOWNSTREAM CG9132 & 1 other
2R	7074591	2R_7074591_INS [dm3] 2R_11187086_INS [dm6]	G	GG	1.256e^-4	0.853	INTRON shn	TF binding site BDTNP1_TFBS_dl
2R	20211873	2R_20211873_SNP [dm3] 2R_24324350_SNP [dm6]	G	A	1.264e^-4	0.854	UPSTREAM CR44810 INTERGENIC
2R	10961463	2R_10961463_SNP [dm3] 2R_15073958_SNP [dm6]	C	T	1.267e^-4	0.854	INTERGENIC
2R	18796052	2R_18796052_SNP [dm3] 2R_22908529_SNP [dm6]	A	T	1.276e^-4	0.855	INTRON nahoda
2L	13119127	2L_13119127_SNP [dm3] 2L_13119127_SNP [dm6]	T	C	1.281e^-4	0.855	UPSTREAM CG43050 EXON CR44198
X	5744978	X_5744978_INS [dm3] X_5850945_INS [dm6]	C	CAACCAACC	1.291e^-4	0.855	INTERGENIC
2R	19675722	2R_19675722_DEL [dm3] 2R_23788199_DEL [dm6]	GCCCACAGCCGG...	G	1.293e^-4	0.855	INTRON CG9850
X	18462699	X_18462699_DEL [dm3] X_18568666_DEL [dm6]	ACCACGTTA	A	1.294e^-4	0.855	INTRON Bx	TF binding site mE1_TFBS_chinmo
2L	2301995	2L_2301995_SNP [dm3] 2L_2301995_SNP [dm6]	T	G	1.299e^-4	0.855	INTERGENIC
2L	2380335	2L_2380335_SNP [dm3] 2L_2380335_SNP [dm6]	T	A	1.300e^-4	0.855	UTR_3_PRIME Atxn7 UPSTREAM Eogt DOWNSTREAM Atxn7	TF binding site BDTNP1_TFBS_dl
3L	14385307	3L_14385307_SNP [dm3] 3L_14392207_SNP [dm6]	A	G	1.312e^-4	0.857	INTERGENIC
2L	7100231	2L_7100231_SNP [dm3] 2L_7100231_SNP [dm6]	T	G	1.313e^-4	0.857	INTRON Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	12325195	2L_12325195_INS [dm3] 2L_12325195_INS [dm6]	A	ACGTAAAGCAAAATATTTTC...	1.326e^-4	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18818347	2R_18818347_SNP [dm3] 2R_22930824_SNP [dm6]	A	T	1.343e^-4	0.868	NON_SYNONYMOUS_CODING CG42678 INTRON CG42678	TF binding site mE1_TFBS_inv
3L	6092202	3L_6092202_SNP [dm3] 3L_6099102_SNP [dm6]	A	T	1.344e^-4	0.868	INTRON Ets65A
2L	15255552	2L_15255552_SNP [dm3] 2L_15255552_SNP [dm6]	C	T	1.347e^-4	0.868	NON_SYNONYMOUS_CODING Pol32 DOWNSTREAM dao	TF binding site mE1_TFBS_HSA
3R	5709131	3R_5709131_SNP [dm3] 3R_9883409_SNP [dm6]	C	G	1.367e^-4	0.878	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2301962	2L_2301962_SNP [dm3] 2L_2301962_SNP [dm6]	T	C	1.378e^-4	0.879	INTERGENIC
2R	16957164	2R_16957164_SNP [dm3] 2R_21069659_SNP [dm6]	A	T	1.386e^-4	0.879	UPSTREAM Cht9 DOWNSTREAM CG10527 & 1 other INTERGENIC
3L	14385314	3L_14385314_DEL [dm3] 3L_14392214_DEL [dm6]	ATAAAAA	A	1.388e^-4	0.879	INTERGENIC
X	20194195	X_20194195_SNP [dm3] X_20323168_SNP [dm6]	C	A	1.397e^-4	0.879	INTRON CG1504
2L	5293891	2L_5293891_SNP [dm3] 2L_5293891_SNP [dm6]	A	G	1.400e^-4	0.879	INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	5720416	3R_5720416_SNP [dm3] 3R_9894694_SNP [dm6]	T	C	1.401e^-4	0.879	INTRON Glut4EF	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	8642232	2L_8642232_SNP [dm3] 2L_8642232_SNP [dm6]	A	T	1.402e^-4	0.879	INTRON Sema-1a
2L	2782693	2L_2782693_SNP [dm3] 2L_2782693_SNP [dm6]	A	G	1.412e^-4	0.882	UTR_3_PRIME Syt1
X	3380537	X_3380537_SNP [dm3] X_3486504_SNP [dm6]	A	G	1.427e^-4	0.887	NON_SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_sens
3R	4369002	3R_4369002_SNP [dm3] 3R_8543280_SNP [dm6]	C	A	1.429e^-4	0.887	INTERGENIC
2R	10998553	2R_10998553_SNP [dm3] 2R_15111048_SNP [dm6]	C	T	1.435e^-4	0.888	INTERGENIC
2L	5814245	2L_5814245_SNP [dm3] 2L_5814245_SNP [dm6]	A	G	1.441e^-4	0.889	INTERGENIC
2L	2301969	2L_2301969_SNP [dm3] 2L_2301969_SNP [dm6]	A	C	1.447e^-4	0.889	INTERGENIC
2L	3110310	2L_3110310_SNP [dm3] 2L_3110310_SNP [dm6]	A	C	1.456e^-4	0.892	SYNONYMOUS_CODING PpD6 INTRON toc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18769488	2R_18769488_SNP [dm3] 2R_22881965_SNP [dm6]	G	A	1.462e^-4	0.893	DOWNSTREAM PIP5K59B & 1 other INTRON CG3501	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	20870180	3L_20870180_SNP [dm3] 3L_20877080_SNP [dm6]	G	A	1.476e^-4	0.898	INTRON CG32432
2L	13948496	2L_13948496_SNP [dm3] 2L_13948496_SNP [dm6]	C	T	1.481e^-4	0.898	INTRON Ance-3
3L	2651226	3L_2651226_SNP [dm3] 3L_2651226_SNP [dm6]	G	T	1.485e^-4	0.898	SYNONYMOUS_CODING Aats-pro UTR_3_PRIME Aats-pro UPSTREAM Snup & 1 other	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	6481657	X_6481657_SNP [dm3] X_6587624_SNP [dm6]	T	C	1.494e^-4	0.898	INTRON CG34417
X	20262200	X_20262200_SNP [dm3] X_20391173_SNP [dm6]	G	A	1.498e^-4	0.898	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17777992	2R_17777992_SNP [dm3] 2R_21890487_SNP [dm6]	G	A	1.499e^-4	0.898	INTRON Fili	TF binding site BDTNP1_TFBS_twi
X	12754344	X_12754344_INS [dm3] X_12860311_INS [dm6]	T	TT	1.512e^-4	0.902	INTRON Pde9
3L	6253824	3L_6253824_SNP [dm3] 3L_6260724_SNP [dm6]	G	C	1.517e^-4	0.902	SYNONYMOUS_CODING ImpL3
2L	12930323	2L_12930323_SNP [dm3] 2L_12930323_SNP [dm6]	A	C	1.522e^-4	0.902	DOWNSTREAM ACXE INTERGENIC
2R	14932148	2R_14932148_DEL [dm3] 2R_19044643_DEL [dm6]	AA	A	1.532e^-4	0.902	INTERGENIC
3R	23900120	3R_23900120_SNP [dm3] 3R_28074398_SNP [dm6]	A	G	1.532e^-4	0.902	INTRON CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20329276	2R_20329276_SNP [dm3] 2R_24441753_SNP [dm6]	T	A	1.541e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9549091	3R_9549091_SNP [dm3] 3R_13723369_SNP [dm6]	T	A	1.543e^-4	0.902	INTRON CG34383
3R	25558986	3R_25558986_SNP [dm3] 3R_29733264_SNP [dm6]	A	C	1.561e^-4	0.902	UTR_3_PRIME Kul
X	18931096	X_18931096_SNP [dm3] X_19037063_SNP [dm6]	A	T	1.561e^-4	0.902	INTERGENIC
2L	13735520	2L_13735520_SNP [dm3] 2L_13735520_SNP [dm6]	T	G	1.565e^-4	0.902	UPSTREAM CG31813 INTERGENIC
3R	20883740	3R_20883740_SNP [dm3] 3R_25058018_SNP [dm6]	C	T	1.571e^-4	0.902	INTRON Unc-13-4B
3R	13600203	3R_13600203_SNP [dm3] 3R_17774481_SNP [dm6]	C	T	1.578e^-4	0.902	UTR_5_PRIME CG43102 INTRON CG43102
3R	13600449	3R_13600449_SNP [dm3] 3R_17774727_SNP [dm6]	C	T	1.578e^-4	0.902	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl
X	3602021	X_3602021_SNP [dm3] X_3707988_SNP [dm6]	G	A	1.586e^-4	0.902	INTRON Rala
2R	17775564	2R_17775564_SNP [dm3] 2R_21888059_SNP [dm6]	T	C	1.591e^-4	0.902	INTRON Fili
X	18454883	X_18454883_SNP [dm3] X_18560850_SNP [dm6]	C	G	1.597e^-4	0.902	INTRON Bx
3L	14142384	3L_14142384_SNP [dm3] 3L_14149284_SNP [dm6]	T	A	1.599e^-4	0.902	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6705710	2L_6705710_SNP [dm3] 2L_6705710_SNP [dm6]	T	C	1.600e^-4	0.902	INTRON Tsp
X	18462620	X_18462620_SNP [dm3] X_18568587_SNP [dm6]	A	G	1.603e^-4	0.902	INTRON Bx	TF binding site mE1_TFBS_chinmo
3L	14565106	3L_14565106_DEL [dm3] 3L_14572006_DEL [dm6]	TT	T	1.606e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17836613	2R_17836613_SNP [dm3] 2R_21949108_SNP [dm6]	T	C	1.608e^-4	0.902	INTERGENIC
3L	12834072	3L_12834072_SNP [dm3] 3L_12840972_SNP [dm6]	A	G	1.626e^-4	0.904	INTRON CG10960	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	3369440	3L_3369440_SNP [dm3] 3L_3369440_SNP [dm6]	T	C	1.636e^-4	0.904	UPSTREAM Drs INTERGENIC	regulatory region REDfly_CRMs
2L	21067663	2L_21067663_SNP [dm3] 2L_21067663_SNP [dm6]	C	G	1.639e^-4	0.904	INTRON CG9265
2L	12488573	2L_12488573_INS [dm3] 2L_12488573_INS [dm6]	C	CAAC	1.649e^-4	0.904	INTRON bun	TF binding site BDTNP1_TFBS_twi
2R	10998487	2R_10998487_SNP [dm3] 2R_15110982_SNP [dm6]	T	C	1.654e^-4	0.904	INTERGENIC
3R	25278909	3R_25278909_SNP [dm3] 3R_29453187_SNP [dm6]	T	G	1.656e^-4	0.904	INTRON Ptp99A	TF binding site mE1_TFBS_chinmo
3R	6219419	3R_6219419_INS [dm3] 3R_10393697_INS [dm6]	C	CCAGC	1.657e^-4	0.904	INTRON cwo
2R	12456029	2R_12456029_SNP [dm3] 2R_16568524_SNP [dm6]	C	A	1.670e^-4	0.904	INTRON CG4945	TF binding site mE1_TFBS_cad
3R	13600041	3R_13600041_SNP [dm3] 3R_17774319_SNP [dm6]	C	T	1.679e^-4	0.904	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
X	9699895	X_9699895_SNP [dm3] X_9805862_SNP [dm6]	C	G	1.686e^-4	0.904	INTRON CG32698
2R	10998591	2R_10998591_SNP [dm3] 2R_15111086_SNP [dm6]	G	T	1.694e^-4	0.904	INTERGENIC
2R	10998597	2R_10998597_SNP [dm3] 2R_15111092_SNP [dm6]	T	C	1.694e^-4	0.904	INTERGENIC
2R	10998602	2R_10998602_SNP [dm3] 2R_15111097_SNP [dm6]	A	T	1.694e^-4	0.904	INTERGENIC
3R	10808270	3R_10808270_SNP [dm3] 3R_14982548_SNP [dm6]	G	A	1.702e^-4	0.904	INTERGENIC
3R	10696077	3R_10696077_SNP [dm3] 3R_14870355_SNP [dm6]	A	G	1.704e^-4	0.904	INTRON btsz
2R	10345424	2R_10345424_SNP [dm3] 2R_14457919_SNP [dm6]	C	T	1.707e^-4	0.904	UPSTREAM Oaz INTRON Oaz	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	21306339	2L_21306339_SNP [dm3] 2L_21306339_SNP [dm6]	T	C	1.711e^-4	0.904	INTRON Mio	transposable element FlyBase
2L	21212176	2L_21212176_SNP [dm3] 2L_21212176_SNP [dm6]	A	G	1.711e^-4	0.904	DOWNSTREAM Atg18b & 1 other INTERGENIC
2R	20211866	2R_20211866_SNP [dm3] 2R_24324343_SNP [dm6]	T	A	1.732e^-4	0.904	UPSTREAM CR44810 INTERGENIC
2L	2302010	2L_2302010_SNP [dm3] 2L_2302010_SNP [dm6]	G	T	1.733e^-4	0.904	INTERGENIC
2L	1955576	2L_1955576_SNP [dm3] 2L_1955576_SNP [dm6]	C	T	1.736e^-4	0.904	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	2204088	3L_2204088_SNP [dm3] 3L_2204088_SNP [dm6]	T	C	1.738e^-4	0.904	INTERGENIC
3R	5722361	3R_5722361_SNP [dm3] 3R_9896639_SNP [dm6]	A	T	1.741e^-4	0.904	INTRON Glut4EF
3L	3289962	3L_3289962_SNP [dm3] 3L_3289962_SNP [dm6]	C	A	1.745e^-4	0.904	UTR_3_PRIME CG12017 INTRON CG12017
2R	6277618	2R_6277618_MNP [dm3] 2R_10390113_MNP [dm6]	AATA	CTCG	1.757e^-4	0.904	INTRON CG42732
2R	19127148	2R_19127148_SNP [dm3] 2R_23239625_SNP [dm6]	T	G	1.760e^-4	0.904	INTERGENIC
3R	5963561	3R_5963561_SNP [dm3] 3R_10137839_SNP [dm6]	T	C	1.760e^-4	0.904	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	7997767	3L_7997767_DEL [dm3] 3L_8004667_DEL [dm6]	GTTGTGTGAATCC...	G	1.765e^-4	0.904	INTRON nmo
3R	22676664	3R_22676664_SNP [dm3] 3R_26850942_SNP [dm6]	T	C	1.766e^-4	0.904	INTRON Lerp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14541160	3L_14541160_SNP [dm3] 3L_14548060_SNP [dm6]	T	C	1.770e^-4	0.904	INTRON CG9238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17755071	2L_17755071_SNP [dm3] 2L_17755071_SNP [dm6]	A	G	1.774e^-4	0.904	INTRON CadN	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10998575	2R_10998575_SNP [dm3] 2R_15111070_SNP [dm6]	T	G	1.777e^-4	0.904	INTERGENIC
2L	9463855	2L_9463855_SNP [dm3] 2L_9463855_SNP [dm6]	C	T	1.779e^-4	0.904	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_kn
X	1194700	X_1194700_SNP [dm3] X_1300667_SNP [dm6]	C	T	1.781e^-4	0.904	INTRON DAAM
3L	10842704	3L_10842704_SNP [dm3] 3L_10849604_SNP [dm6]	G	T	1.782e^-4	0.904	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	16817408	3L_16817408_SNP [dm3] 3L_16824308_SNP [dm6]	T	C	1.788e^-4	0.904	INTRON CG13024
X	13095658	X_13095658_SNP [dm3] X_13201625_SNP [dm6]	C	T	1.793e^-4	0.904	SYNONYMOUS_CODING CG44437 INTRON sno	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	16459324	2R_16459324_SNP [dm3] 2R_20571819_SNP [dm6]	A	G	1.796e^-4	0.904	INTRON qsm
3L	12834069	3L_12834069_SNP [dm3] 3L_12840969_SNP [dm6]	T	C	1.801e^-4	0.904	INTRON CG10960	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	13505970	2R_13505970_SNP [dm3] 2R_17618465_SNP [dm6]	C	A	1.814e^-4	0.904	UPSTREAM CG44403 INTRON CG10936
3R	8866200	3R_8866200_SNP [dm3] 3R_13040478_SNP [dm6]	T	C	1.832e^-4	0.904	SYNONYMOUS_CODING snk UTR_3_PRIME snk DOWNSTREAM CG11668	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9716369	3L_9716369_SNP [dm3] 3L_9723269_SNP [dm6]	T	C	1.833e^-4	0.904	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	19826237	3R_19826237_SNP [dm3] 3R_24000515_SNP [dm6]	A	G	1.836e^-4	0.904	SYNONYMOUS_CODING KrT95D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5690915	2R_5690915_INS [dm3] 2R_9803410_INS [dm6]	G	GCG	1.838e^-4	0.904	INTRON CG1688
2R	16957175	2R_16957175_SNP [dm3] 2R_21069670_SNP [dm6]	T	A	1.842e^-4	0.904	UPSTREAM Cht9 DOWNSTREAM CG10527 & 1 other INTERGENIC
3R	6249047	3R_6249047_SNP [dm3] 3R_10423325_SNP [dm6]	G	A	1.843e^-4	0.904	INTERGENIC
X	5039294	X_5039294_SNP [dm3] X_5145261_SNP [dm6]	C	G	1.850e^-4	0.904	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl
3R	6218645	3R_6218645_SNP [dm3] 3R_10392923_SNP [dm6]	A	G	1.850e^-4	0.904	INTRON cwo
2R	19905418	2R_19905418_SNP [dm3] 2R_24017895_SNP [dm6]	C	T	1.851e^-4	0.904	SPLICE_SITE_REGION CG3121 UPSTREAM CG4324 INTRON CG3121	TF binding site BDTNP1_TFBS_twi
2R	10571474	2R_10571474_SNP [dm3] 2R_14683969_SNP [dm6]	G	T	1.856e^-4	0.904	INTRON mspo
2R	12543724	2R_12543724_SNP [dm3] 2R_16656219_SNP [dm6]	G	A	1.857e^-4	0.904	SYNONYMOUS_CODING Picot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	20649639	X_20649639_INS [dm3] X_20778612_INS [dm6]	T	TGATATCTGCAATT...	1.870e^-4	0.906	INTRON shakB
2R	16303230	2R_16303230_SNP [dm3] 2R_20415725_SNP [dm6]	C	A	1.883e^-4	0.906	INTERGENIC
2L	18858630	2L_18858630_DEL [dm3] 2L_18858630_DEL [dm6]	AATCGGCGACCAT...	A	1.890e^-4	0.906	UPSTREAM CG10602 DOWNSTREAM tup INTRON CG10602 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
3L	2651826	3L_2651826_SNP [dm3] 3L_2651826_SNP [dm6]	T	C	1.891e^-4	0.906	UTR_5_PRIME Aats-pro UPSTREAM Snup & 1 other
2R	20223679	2R_20223679_SNP [dm3] 2R_24336156_SNP [dm6]	G	A	1.894e^-4	0.906	UPSTREAM CR44282 INTERGENIC
X	6251120	X_6251120_SNP [dm3] X_6357087_SNP [dm6]	T	G	1.900e^-4	0.906	INTRON kdn
3L	1857653	3L_1857653_SNP [dm3] 3L_1857653_SNP [dm6]	C	T	1.904e^-4	0.906	SYNONYMOUS_CODING CG12024	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	1196886	X_1196886_SNP [dm3] X_1302853_SNP [dm6]	T	C	1.910e^-4	0.906	INTRON DAAM	TF binding site mE1_TFBS_chinmo
3L	5605553	3L_5605553_SNP [dm3] 3L_5612453_SNP [dm6]	T	A	1.917e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13914736	3R_13914736_SNP [dm3] 3R_18089014_SNP [dm6]	C	A	1.920e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
X	15425490	X_15425490_SNP [dm3] X_15531457_SNP [dm6]	T	A	1.920e^-4	0.906	INTRON Ac13E	TF binding site BDTNP1_TFBS_twi
2R	1386475	2R_1386475_SNP [dm3] 2R_5498970_SNP [dm6]	A	T	1.920e^-4	0.906	INTRON CG30438
3R	13901400	3R_13901400_SNP [dm3] 3R_18075678_SNP [dm6]	A	G	1.923e^-4	0.906	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19077042	X_19077042_SNP [dm3] X_19183009_SNP [dm6]	A	T	1.944e^-4	0.908	UPSTREAM CG33253 DOWNSTREAM CG7453 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9716375	3L_9716375_SNP [dm3] 3L_9723275_SNP [dm6]	G	T	1.945e^-4	0.908	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	15741827	3L_15741827_SNP [dm3] 3L_15748727_SNP [dm6]	T	C	1.946e^-4	0.908	DOWNSTREAM CR45240 INTERGENIC
2L	13735512	2L_13735512_SNP [dm3] 2L_13735512_SNP [dm6]	T	A	1.962e^-4	0.908	UPSTREAM CG31813 INTERGENIC
2L	21802262	2L_21802262_SNP [dm3] 2L_21802262_SNP [dm6]	A	G	1.966e^-4	0.908	INTERGENIC
3R	6661364	3R_6661364_SNP [dm3] 3R_10835642_SNP [dm6]	A	G	1.967e^-4	0.908	INTRON Cad86C
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	1.968e^-4	0.908	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1719460	3L_1719460_SNP [dm3] 3L_1719460_SNP [dm6]	C	T	1.969e^-4	0.908	SYNONYMOUS_CODING drpr INTRON drpr	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12923423	2L_12923423_SNP [dm3] 2L_12923423_SNP [dm6]	T	G	1.978e^-4	0.908	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
X	20156726	X_20156726_SNP [dm3] X_20285699_SNP [dm6]	T	A	1.979e^-4	0.908	INTERGENIC
3L	14388106	3L_14388106_SNP [dm3] 3L_14395006_SNP [dm6]	C	T	1.985e^-4	0.908	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	5979576	3L_5979576_INS [dm3] 3L_5986476_INS [dm6]	C	CG	1.990e^-4	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	13735525	2L_13735525_SNP [dm3] 2L_13735525_SNP [dm6]	A	C	1.991e^-4	0.908	UPSTREAM CG31813 INTERGENIC
X	8113210	X_8113210_SNP [dm3] X_8219177_SNP [dm6]	A	C	1.997e^-4	0.909	INTRON sdt	TF binding site BDTNP1_TFBS_dl
2L	5869169	2L_5869169_SNP [dm3] 2L_5869169_SNP [dm6]	G	T	2.006e^-4	0.909	INTRON rau
3L	14385472	3L_14385472_INS [dm3] 3L_14392372_INS [dm6]	C	CT	2.007e^-4	0.909	INTERGENIC
2L	21310149	2L_21310149_SNP [dm3] 2L_21310149_SNP [dm6]	G	T	2.011e^-4	0.909	UPSTREAM Mio & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	7445661	2R_7445661_SNP [dm3] 2R_11558156_SNP [dm6]	A	T	2.040e^-4	0.917	INTERGENIC
2L	5735339	2L_5735339_SNP [dm3] 2L_5735339_SNP [dm6]	A	G	2.049e^-4	0.917	SYNONYMOUS_CODING CG11147 INTRON CG11030	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20218412	X_20218412_SNP [dm3] X_20347385_SNP [dm6]	T	A	2.056e^-4	0.917	INTERGENIC
3L	6290110	3L_6290110_SNP [dm3] 3L_6297010_SNP [dm6]	C	G	2.057e^-4	0.917	INTERGENIC
3R	14481857	3R_14481857_SNP [dm3] 3R_18656135_SNP [dm6]	G	A	2.057e^-4	0.917	INTRON CG31224	TF binding site mE1_TFBS_cad
3R	17038829	3R_17038829_SNP [dm3] 3R_21213107_SNP [dm6]	A	T	2.060e^-4	0.917	UTR_3_PRIME SNF4Agamma DOWNSTREAM SNF4Agamma
3L	10923391	3L_10923391_SNP [dm3] 3L_10930291_SNP [dm6]	C	A	2.071e^-4	0.919	INTERGENIC
2R	17485600	2R_17485600_SNP [dm3] 2R_21598095_SNP [dm6]	T	C	2.078e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12754498	X_12754498_SNP [dm3] X_12860465_SNP [dm6]	T	A	2.095e^-4	0.919	INTRON Pde9
3L	10842876	3L_10842876_SNP [dm3] 3L_10849776_SNP [dm6]	G	C	2.096e^-4	0.919	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1974874	2L_1974874_SNP [dm3] 2L_1974874_SNP [dm6]	G	C	2.102e^-4	0.919	SPLICE_SITE_REGION Der-1 DOWNSTREAM CG15356 INTRON Der-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	21906528	2L_21906528_SNP [dm3] 2L_21906528_SNP [dm6]	A	G	2.113e^-4	0.919	NON_SYNONYMOUS_CODING CG1428	TF binding site mE1_TFBS_cad
X	5281524	X_5281524_SNP [dm3] X_5387491_SNP [dm6]	T	C	2.113e^-4	0.919	INTRON SK
3L	2656765	3L_2656765_SNP [dm3] 3L_2656765_SNP [dm6]	G	A	2.118e^-4	0.919	UTR_3_PRIME Fife
3R	17038811	3R_17038811_SNP [dm3] 3R_21213089_SNP [dm6]	A	G	2.120e^-4	0.919	UTR_3_PRIME SNF4Agamma DOWNSTREAM SNF4Agamma
X	20276949	X_20276949_SNP [dm3] X_20405922_SNP [dm6]	G	A	2.127e^-4	0.919	SYNONYMOUS_CODING HERC2	TF binding site mE1_TFBS_chinmo
2R	12545025	2R_12545025_INS [dm3] 2R_16657520_INS [dm6]	T	TATTTCACTAAATCTGTAAA...	2.135e^-4	0.919	INTRON Picot
2R	8360529	2R_8360529_SNP [dm3] 2R_12473024_SNP [dm6]	T	G	2.138e^-4	0.919	SYNONYMOUS_CODING CG8550
3R	20424484	3R_20424484_SNP [dm3] 3R_24598762_SNP [dm6]	A	T	2.146e^-4	0.919	INTRON mld
3R	6219136	3R_6219136_SNP [dm3] 3R_10393414_SNP [dm6]	T	A	2.149e^-4	0.919	INTRON cwo
3R	5125153	3R_5125153_SNP [dm3] 3R_9299431_SNP [dm6]	G	C	2.156e^-4	0.919	INTRON CG8861
2R	10998561	2R_10998561_INS [dm3] 2R_15111056_INS [dm6]	T	TCTATC	2.158e^-4	0.919	INTERGENIC
X	7460332	X_7460332_SNP [dm3] X_7566299_SNP [dm6]	C	T	2.159e^-4	0.919	INTERGENIC
X	18122204	X_18122204_SNP [dm3] X_18228171_SNP [dm6]	T	G	2.165e^-4	0.919	EXON CR45622
2R	13270117	2R_13270117_SNP [dm3] 2R_17382612_SNP [dm6]	T	A	2.168e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_inv
2R	19550990	2R_19550990_SNP [dm3] 2R_23663467_SNP [dm6]	G	A	2.173e^-4	0.919	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15934446	3R_15934446_SNP [dm3] 3R_20108724_SNP [dm6]	A	G	2.175e^-4	0.919	UPSTREAM CG31206 INTERGENIC
3L	10877280	3L_10877280_SNP [dm3] 3L_10884180_SNP [dm6]	C	G	2.192e^-4	0.919	DOWNSTREAM CG6404 & 1 other INTERGENIC
3L	11238832	3L_11238832_SNP [dm3] 3L_11245732_SNP [dm6]	A	G	2.197e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	12908132	X_12908132_SNP [dm3] X_13014099_SNP [dm6]	G	A	2.206e^-4	0.919	INTRON rad
3L	13113697	3L_13113697_SNP [dm3] 3L_13120597_SNP [dm6]	T	C	2.207e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	16071292	3L_16071292_SNP [dm3] 3L_16078192_SNP [dm6]	C	T	2.210e^-4	0.919	INTRON Mbs	TF binding site BDTNP1_TFBS_dl
2R	12456039	2R_12456039_SNP [dm3] 2R_16568534_SNP [dm6]	T	C	2.213e^-4	0.919	INTRON CG4945	TF binding site mE1_TFBS_cad
3R	17861073	3R_17861073_SNP [dm3] 3R_22035351_SNP [dm6]	G	A	2.221e^-4	0.919	UTR_3_PRIME Fadd UPSTREAM pit & 1 other INTRON pit	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	2654800	3L_2654800_SNP [dm3] 3L_2654800_SNP [dm6]	G	A	2.222e^-4	0.919	SYNONYMOUS_CODING CG42304 UTR_3_PRIME Snup DOWNSTREAM Fife
3R	25315635	3R_25315635_SNP [dm3] 3R_29489913_SNP [dm6]	T	C	2.225e^-4	0.919	SYNONYMOUS_CODING CG2006 UPSTREAM CG2321 DOWNSTREAM Spase12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10998796	2R_10998796_SNP [dm3] 2R_15111291_SNP [dm6]	G	A	2.230e^-4	0.919	INTERGENIC
2L	2930807	2L_2930807_SNP [dm3] 2L_2930807_SNP [dm6]	C	T	2.233e^-4	0.919	INTRON lilli
3L	16813356	3L_16813356_SNP [dm3] 3L_16820256_SNP [dm6]	G	A	2.236e^-4	0.919	DOWNSTREAM nudC INTRON CG13024
2L	17754743	2L_17754743_SNP [dm3] 2L_17754743_SNP [dm6]	C	T	2.247e^-4	0.919	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2647414	3L_2647414_SNP [dm3] 3L_2647414_SNP [dm6]	A	G	2.256e^-4	0.919	UPSTREAM CG1246 DOWNSTREAM CG1143 INTERGENIC
X	19921521	X_19921521_SNP [dm3] X_20027488_SNP [dm6]	A	G	2.261e^-4	0.919	INTRON Dop2R
2R	9131358	2R_9131358_SNP [dm3] 2R_13243853_SNP [dm6]	T	A	2.263e^-4	0.919	DOWNSTREAM CR45278 INTERGENIC
2R	5084326	2R_5084326_SNP [dm3] 2R_9196821_SNP [dm6]	C	T	2.263e^-4	0.919	INTRON unpg
2R	9131363	2R_9131363_SNP [dm3] 2R_13243858_SNP [dm6]	T	C	2.270e^-4	0.919	DOWNSTREAM CR45278 INTERGENIC
2L	19129700	2L_19129700_SNP [dm3] 2L_19129700_SNP [dm6]	A	G	2.271e^-4	0.919	UTR_3_PRIME Aats-asn DOWNSTREAM Aats-asn & 1 other	TF binding site mE1_TFBS_cad
X	14665284	X_14665284_SNP [dm3] X_14771251_SNP [dm6]	T	A	2.272e^-4	0.919	INTERGENIC
2R	10548350	2R_10548350_SNP [dm3] 2R_14660845_SNP [dm6]	A	T	2.273e^-4	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18930447	2L_18930447_SNP [dm3] 2L_18930447_SNP [dm6]	G	A	2.274e^-4	0.919	INTRON ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11479540	2R_11479540_SNP [dm3] 2R_15592035_SNP [dm6]	C	T	2.287e^-4	0.922	INTERGENIC
2L	8447265	2L_8447265_SNP [dm3] 2L_8447265_SNP [dm6]	A	G	2.299e^-4	0.925	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	16459010	2R_16459010_SNP [dm3] 2R_20571505_SNP [dm6]	G	A	2.317e^-4	0.93	INTRON qsm
2L	21372440	2L_21372440_SNP [dm3] 2L_21372440_SNP [dm6]	A	G	2.331e^-4	0.934	INTRON CG8665
2L	21306297	2L_21306297_SNP [dm3] 2L_21306297_SNP [dm6]	G	T	2.337e^-4	0.934	INTRON Mio	transposable element FlyBase
3L	14555445	3L_14555445_SNP [dm3] 3L_14562345_SNP [dm6]	A	T	2.344e^-4	0.935	INTRON CG34039	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
X	14154495	X_14154495_SNP [dm3] X_14260462_SNP [dm6]	A	G	2.353e^-4	0.936	UPSTREAM CG1461 INTERGENIC
X	785644	X_785644_SNP [dm3] X_891611_SNP [dm6]	C	G	2.356e^-4	0.936	INTRON CG43867
2R	18766853	2R_18766853_SNP [dm3] 2R_22879330_SNP [dm6]	G	C	2.369e^-4	0.939	INTRON PIP5K59B	TF binding site mE1_TFBS_chinmo
X	14523866	X_14523866_INS [dm3] X_14629833_INS [dm6]	G	GTGGGACATACGGACAG...	2.374e^-4	0.939	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12709389	X_12709389_SNP [dm3] X_12815356_SNP [dm6]	C	G	2.386e^-4	0.94	INTRON Pde9
2R	5050714	2R_5050714_SNP [dm3] 2R_9163209_SNP [dm6]	A	C	2.386e^-4	0.94	NON_SYNONYMOUS_CODING CG8046	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12899069	3L_12899069_DEL [dm3] 3L_12905969_DEL [dm6]	CGACC	C	2.398e^-4	0.941	INTERGENIC
3L	12899075	3L_12899075_DEL [dm3] 3L_12905975_DEL [dm6]	TG	T	2.398e^-4	0.941	INTERGENIC
3R	6249035	3R_6249035_INS [dm3] 3R_10423313_INS [dm6]	T	TT	2.411e^-4	0.941	INTERGENIC
2R	10998557	2R_10998557_SNP [dm3] 2R_15111052_SNP [dm6]	A	T	2.414e^-4	0.941	INTERGENIC
3L	3731065	3L_3731065_DEL [dm3] 3L_3731065_DEL [dm6]	ACACAAT	A	2.417e^-4	0.941	INTRON CG32264
3L	9716431	3L_9716431_SNP [dm3] 3L_9723331_SNP [dm6]	A	C	2.446e^-4	0.941	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12536642	2R_12536642_SNP [dm3] 2R_16649137_SNP [dm6]	C	T	2.447e^-4	0.941	UTR_3_PRIME gprs DOWNSTREAM gprs INTRON gprs
3L	8547818	3L_8547818_SNP [dm3] 3L_8554718_SNP [dm6]	T	A	2.450e^-4	0.941	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17597106	2L_17597106_SNP [dm3] 2L_17597106_SNP [dm6]	C	T	2.455e^-4	0.941	INTRON Sytalpha	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	2647819	3L_2647819_SNP [dm3] 3L_2647819_SNP [dm6]	T	G	2.455e^-4	0.941	UPSTREAM CG1246 DOWNSTREAM CG1143 INTERGENIC
3R	10272587	3R_10272587_SNP [dm3] 3R_14446865_SNP [dm6]	C	T	2.459e^-4	0.941	INTRON cv-c
2R	15895683	2R_15895683_SNP [dm3] 2R_20008178_SNP [dm6]	A	T	2.463e^-4	0.941	DOWNSTREAM CR44628 INTERGENIC
2L	21372692	2L_21372692_SNP [dm3] 2L_21372692_SNP [dm6]	T	G	2.465e^-4	0.941	INTRON CG8665	transposable element FlyBase
2R	15895693	2R_15895693_SNP [dm3] 2R_20008188_SNP [dm6]	A	G	2.466e^-4	0.941	DOWNSTREAM CR44628 INTERGENIC
3R	21876295	3R_21876295_SNP [dm3] 3R_26050573_SNP [dm6]	T	C	2.467e^-4	0.941	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24710725	3R_24710725_SNP [dm3] 3R_28885003_SNP [dm6]	C	T	2.472e^-4	0.941	SYNONYMOUS_CODING CG14526 INTRON CG33203	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15352656	2R_15352656_SNP [dm3] 2R_19465151_SNP [dm6]	T	C	2.474e^-4	0.941	SYNONYMOUS_CODING par-1 INTRON par-1	TF binding site mE1_TFBS_cad
2L	8642361	2L_8642361_INS [dm3] 2L_8642361_INS [dm6]	T	TA	2.479e^-4	0.941	INTRON Sema-1a
2R	11532730	2R_11532730_SNP [dm3] 2R_15645225_SNP [dm6]	G	A	2.493e^-4	0.942	INTRON CG42524	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	12834481	3L_12834481_SNP [dm3] 3L_12841381_SNP [dm6]	C	G	2.495e^-4	0.942	INTRON CG10960
3R	14515011	3R_14515011_SNP [dm3] 3R_18689289_SNP [dm6]	G	A	2.497e^-4	0.942	NON_SYNONYMOUS_CODING Muc91C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3262929	3L_3262929_SNP [dm3] 3L_3262929_SNP [dm6]	G	A	2.509e^-4	0.942	INTRON ckd
2R	6805919	2R_6805919_SNP [dm3] 2R_10918414_SNP [dm6]	G	A	2.516e^-4	0.942	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	15764402	3R_15764402_SNP [dm3] 3R_19938680_SNP [dm6]	T	G	2.518e^-4	0.942	INTRON Hs6st
X	6481542	X_6481542_DEL [dm3] X_6587509_DEL [dm6]	AAAA	T	2.519e^-4	0.942	INTRON CG34417
2R	9495479	2R_9495479_SNP [dm3] 2R_13607974_SNP [dm6]	C	A	2.524e^-4	0.942	DOWNSTREAM CG12464 INTERGENIC
3R	20883759	3R_20883759_SNP [dm3] 3R_25058037_SNP [dm6]	A	G	2.529e^-4	0.942	INTRON Unc-13-4B
X	20258564	X_20258564_SNP [dm3] X_20387537_SNP [dm6]	T	C	2.534e^-4	0.942	INTERGENIC
2L	20866883	2L_20866883_SNP [dm3] 2L_20866883_SNP [dm6]	C	A	2.559e^-4	0.945	UPSTREAM CG31675 INTRON CG9338
2R	17130483	2R_17130483_SNP [dm3] 2R_21242978_SNP [dm6]	C	A	2.560e^-4	0.945	INTRON ASPP
2L	13325482	2L_13325482_SNP [dm3] 2L_13325482_SNP [dm6]	C	A	2.571e^-4	0.945	INTRON CG43778
3L	5979581	3L_5979581_SNP [dm3] 3L_5986481_SNP [dm6]	C	A	2.578e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	6055459	3L_6055459_SNP [dm3] 3L_6062359_SNP [dm6]	G	T	2.582e^-4	0.945	SYNONYMOUS_CODING CG10472 DOWNSTREAM CG6592	TF binding site mE1_TFBS_cad
X	1190943	X_1190943_SNP [dm3] X_1296910_SNP [dm6]	T	C	2.591e^-4	0.945	INTRON DAAM	TF binding site mE1_TFBS_chinmo
3L	2647839	3L_2647839_SNP [dm3] 3L_2647839_SNP [dm6]	C	G	2.600e^-4	0.945	UPSTREAM CG1246 DOWNSTREAM CG1143 INTERGENIC
X	22267450	X_22267450_SNP [dm3] X_22865614_SNP [dm6]	A	T	2.606e^-4	0.945	INTRON CG42346
3R	20883798	3R_20883798_SNP [dm3] 3R_25058076_SNP [dm6]	A	C	2.607e^-4	0.945	INTRON Unc-13-4B
2R	17691152	2R_17691152_SNP [dm3] 2R_21803647_SNP [dm6]	T	C	2.608e^-4	0.945	EXON CR9284
2R	15838613	2R_15838613_SNP [dm3] 2R_19951108_SNP [dm6]	G	A	2.611e^-4	0.945	UPSTREAM CG10822 INTERGENIC
3R	18480919	3R_18480919_SNP [dm3] 3R_22655197_SNP [dm6]	T	G	2.618e^-4	0.945	INTRON CG45058
3L	22919566	3L_22919566_SNP [dm3] 3L_22926466_SNP [dm6]	A	G	2.618e^-4	0.945	INTERGENIC
3R	18479994	3R_18479994_SNP [dm3] 3R_22654272_SNP [dm6]	C	T	2.629e^-4	0.945	INTRON CG45058
3R	2577503	3R_2577503_SNP [dm3] 3R_6751781_SNP [dm6]	T	A	2.641e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8746447	2L_8746447_SNP [dm3] 2L_8746447_SNP [dm6]	C	A	2.652e^-4	0.945	INTERGENIC
X	8710525	X_8710525_SNP [dm3] X_8816492_SNP [dm6]	C	G	2.652e^-4	0.945	INTERGENIC
2L	8643488	2L_8643488_SNP [dm3] 2L_8643488_SNP [dm6]	A	T	2.667e^-4	0.945	INTRON Sema-1a
3L	12223155	3L_12223155_SNP [dm3] 3L_12230055_SNP [dm6]	A	T	2.670e^-4	0.945	INTRON app
2R	9137625	2R_9137625_SNP [dm3] 2R_13250120_SNP [dm6]	G	A	2.670e^-4	0.945	SYNONYMOUS_CODING CG4712
3L	15633361	3L_15633361_SNP [dm3] 3L_15640261_SNP [dm6]	G	A	2.672e^-4	0.945	INTRON comm3	TF binding site mE1_TFBS_inv
2L	21370223	2L_21370223_INS [dm3] 2L_21370223_INS [dm6]	G	GATCG	2.675e^-4	0.945	UPSTREAM Gr39b INTERGENIC
2R	12536502	2R_12536502_SNP [dm3] 2R_16648997_SNP [dm6]	A	G	2.680e^-4	0.945	UTR_3_PRIME gprs DOWNSTREAM gprs INTRON gprs
X	18462623	X_18462623_DEL [dm3] X_18568590_DEL [dm6]	TAGAA	CT	2.685e^-4	0.945	INTRON Bx	TF binding site mE1_TFBS_chinmo
X	5702213	X_5702213_SNP [dm3] X_5808180_SNP [dm6]	T	G	2.689e^-4	0.945	UPSTREAM Prosbeta2R1 INTERGENIC
2R	17775566	2R_17775566_SNP [dm3] 2R_21888061_SNP [dm6]	C	G	2.692e^-4	0.945	INTRON Fili
2L	21883243	2L_21883243_SNP [dm3] 2L_21883243_SNP [dm6]	A	T	2.698e^-4	0.945	INTERGENIC
3L	4861710	3L_4861710_SNP [dm3] 3L_4861710_SNP [dm6]	C	A	2.725e^-4	0.945	INTRON CG17150
3L	7724389	3L_7724389_SNP [dm3] 3L_7731289_SNP [dm6]	A	G	2.730e^-4	0.945	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11236177	3L_11236177_SNP [dm3] 3L_11243077_SNP [dm6]	C	A	2.731e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	10847892	2L_10847892_SNP [dm3] 2L_10847892_SNP [dm6]	A	G	2.739e^-4	0.945	SYNONYMOUS_CODING porin UPSTREAM Porin2
X	8633631	X_8633631_SNP [dm3] X_8739598_SNP [dm6]	T	C	2.756e^-4	0.945	INTERGENIC
2R	9131365	2R_9131365_SNP [dm3] 2R_13243860_SNP [dm6]	T	G	2.758e^-4	0.945	DOWNSTREAM CR45278 INTERGENIC
3R	26074070	3R_26074070_SNP [dm3] 3R_30248348_SNP [dm6]	T	C	2.770e^-4	0.945	UPSTREAM tRNA:CR31383 DOWNSTREAM tRNA:CR31023 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2651890	3L_2651890_SNP [dm3] 3L_2651890_SNP [dm6]	C	A	2.772e^-4	0.945	UPSTREAM Snup & 2 others INTERGENIC
X	13012076	X_13012076_SNP [dm3] X_13118043_SNP [dm6]	A	C	2.773e^-4	0.945	INTRON CG42237
X	5250384	X_5250384_SNP [dm3] X_5356351_SNP [dm6]	T	A	2.786e^-4	0.945	INTRON SK
2L	12676970	2L_12676970_SNP [dm3] 2L_12676970_SNP [dm6]	A	T	2.787e^-4	0.945	INTRON pdm2	TF binding site BDTNP1_TFBS_dl
3L	3354893	3L_3354893_SNP [dm3] 3L_3354893_SNP [dm6]	C	G	2.789e^-4	0.945	INTRON kst	TF binding site mE1_TFBS_cad
3L	3354897	3L_3354897_DEL [dm3] 3L_3354897_DEL [dm6]	GTAC	G	2.789e^-4	0.945	INTRON kst	TF binding site mE1_TFBS_cad
3L	3354906	3L_3354906_SNP [dm3] 3L_3354906_SNP [dm6]	C	T	2.789e^-4	0.945	INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	3354908	3L_3354908_INS [dm3] 3L_3354908_INS [dm6]	C	CGGC	2.789e^-4	0.945	INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	10114013	2R_10114013_SNP [dm3] 2R_14226508_SNP [dm6]	C	T	2.794e^-4	0.945	INTRON CG8468
3R	6189761	3R_6189761_SNP [dm3] 3R_10364039_SNP [dm6]	G	A	2.798e^-4	0.945	SYNONYMOUS_CODING Rfx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20532530	X_20532530_SNP [dm3] X_20661503_SNP [dm6]	G	T	2.808e^-4	0.945	UPSTREAM CG1835 DOWNSTREAM Cyp6v1 INTERGENIC
2L	20991674	2L_20991674_SNP [dm3] 2L_20991674_SNP [dm6]	C	A	2.813e^-4	0.945	INTRON CG42238
X	16023102	X_16023102_DEL [dm3] X_16129069_DEL [dm6]	TGGT	T	2.821e^-4	0.945	INTRON disco-r
X	16690567	X_16690567_SNP [dm3] X_16796534_SNP [dm6]	T	G	2.825e^-4	0.945	UTR_3_PRIME CG4768 DOWNSTREAM CG9132 & 1 other
3L	6245713	3L_6245713_SNP [dm3] 3L_6252613_SNP [dm6]	T	C	2.825e^-4	0.945	INTRON Best2
2L	20991750	2L_20991750_SNP [dm3] 2L_20991750_SNP [dm6]	A	C	2.837e^-4	0.945	INTRON CG42238
2L	19131543	2L_19131543_SNP [dm3] 2L_19131543_SNP [dm6]	C	T	2.838e^-4	0.945	SYNONYMOUS_CODING Aats-asn UPSTREAM l_2_37Ce	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	2647419	3L_2647419_SNP [dm3] 3L_2647419_SNP [dm6]	A	C	2.840e^-4	0.945	UPSTREAM CG1246 DOWNSTREAM CG1143 INTERGENIC
X	20532529	X_20532529_SNP [dm3] X_20661502_SNP [dm6]	A	T	2.840e^-4	0.945	UPSTREAM CG1835 DOWNSTREAM Cyp6v1 INTERGENIC
2R	19911540	2R_19911540_SNP [dm3] 2R_24024017_SNP [dm6]	A	G	2.854e^-4	0.945	UPSTREAM Adk2 DOWNSTREAM CR45350 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9803226	3R_9803226_SNP [dm3] 3R_13977504_SNP [dm6]	C	T	2.854e^-4	0.945	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	8554305	3L_8554305_SNP [dm3] 3L_8561205_SNP [dm6]	A	G	2.854e^-4	0.945	INTRON rhea
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	2.855e^-4	0.945	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	5990948	3R_5990948_SNP [dm3] 3R_10165226_SNP [dm6]	C	T	2.855e^-4	0.945	SYNONYMOUS_CODING Best1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18794368	2R_18794368_SNP [dm3] 2R_22906845_SNP [dm6]	G	A	2.870e^-4	0.945	INTRON nahoda
2R	19028840	2R_19028840_INS [dm3] 2R_23141317_INS [dm6]	T	TCCAT	2.884e^-4	0.945	UPSTREAM CG13544 & 1 other INTERGENIC
X	676303	X_676303_SNP [dm3] X_782270_SNP [dm6]	T	C	2.889e^-4	0.945	SYNONYMOUS_CODING fz3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	6019700	2R_6019700_SNP [dm3] 2R_10132195_SNP [dm6]	A	C	2.890e^-4	0.945	INTRON gem	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10842871	3L_10842871_SNP [dm3] 3L_10849771_SNP [dm6]	A	C	2.897e^-4	0.945	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9463889	2L_9463889_DEL [dm3] 2L_9463889_DEL [dm6]	CA	G	2.901e^-4	0.945	UTR_3_PRIME numb DOWNSTREAM numb
X	3967257	X_3967257_SNP [dm3] X_4073224_SNP [dm6]	A	T	2.904e^-4	0.945	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	6252784	3L_6252784_SNP [dm3] 3L_6259684_SNP [dm6]	T	C	2.907e^-4	0.945	UTR_3_PRIME ImpL3 UPSTREAM CG10163
3L	14388810	3L_14388810_SNP [dm3] 3L_14395710_SNP [dm6]	A	C	2.909e^-4	0.945	INTERGENIC
2L	3126404	2L_3126404_SNP [dm3] 2L_3126404_SNP [dm6]	G	A	2.939e^-4	0.945	NON_SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	16726251	3L_16726251_SNP [dm3] 3L_16733151_SNP [dm6]	A	C	2.942e^-4	0.945	UPSTREAM CG9701 INTERGENIC
3L	10842771	3L_10842771_SNP [dm3] 3L_10849671_SNP [dm6]	T	C	2.951e^-4	0.945	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	19024849	2R_19024849_SNP [dm3] 2R_23137326_SNP [dm6]	T	G	2.960e^-4	0.945	INTERGENIC
2L	1034914	2L_1034914_SNP [dm3] 2L_1034914_SNP [dm6]	T	C	2.961e^-4	0.945	UPSTREAM IA-2 INTRON IA-2
3R	13914318	3R_13914318_SNP [dm3] 3R_18088596_SNP [dm6]	C	T	2.965e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	20328947	2R_20328947_SNP [dm3] 2R_24441424_SNP [dm6]	T	C	2.971e^-4	0.945	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	21785894	2L_21785894_SNP [dm3] 2L_21785894_SNP [dm6]	G	C	2.977e^-4	0.945	INTRON CG31612
2R	20223669	2R_20223669_SNP [dm3] 2R_24336146_SNP [dm6]	A	G	2.978e^-4	0.945	UPSTREAM CR44282 INTERGENIC
3L	12627066	3L_12627066_SNP [dm3] 3L_12633966_SNP [dm6]	G	A	2.984e^-4	0.945	INTRON CR32111	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2645081	3L_2645081_SNP [dm3] 3L_2645081_SNP [dm6]	A	G	2.984e^-4	0.945	UPSTREAM CG1143 INTERGENIC
3R	13914747	3R_13914747_SNP [dm3] 3R_18089025_SNP [dm6]	A	G	2.985e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
X	2926734	X_2926734_SNP [dm3] X_3032701_SNP [dm6]	C	A	2.990e^-4	0.945	INTRON kirre
2R	1288303	2R_1288303_SNP [dm3] 2R_5400798_SNP [dm6]	G	T	2.990e^-4	0.945	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	21780835	2L_21780835_SNP [dm3] 2L_21780835_SNP [dm6]	A	T	2.990e^-4	0.945	INTRON CG31612	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23197739	3R_23197739_SNP [dm3] 3R_27372017_SNP [dm6]	G	A	2.994e^-4	0.945	UTR_3_PRIME CG42534 DOWNSTREAM CG42534
3R	23900244	3R_23900244_SNP [dm3] 3R_28074522_SNP [dm6]	G	A	3.002e^-4	0.945	INTRON CG34362	TF binding site mE1_TFBS_chinmo
3L	1730245	3L_1730245_SNP [dm3] 3L_1730245_SNP [dm6]	A	G	3.012e^-4	0.945	DOWNSTREAM Oseg4 INTRON drpr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	12846116	3L_12846116_INS [dm3] 3L_12853016_INS [dm6]	T	TT	3.014e^-4	0.945	UTR_3_PRIME Wbp2 UPSTREAM Ent3 DOWNSTREAM Wbp2
3L	1371210	3L_1371210_SNP [dm3] 3L_1371210_SNP [dm6]	T	C	3.019e^-4	0.945	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_HSA
2R	20223672	2R_20223672_SNP [dm3] 2R_24336149_SNP [dm6]	C	G	3.022e^-4	0.945	UPSTREAM CR44282 INTERGENIC
2R	18796056	2R_18796056_SNP [dm3] 2R_22908533_SNP [dm6]	A	T	3.022e^-4	0.945	INTRON nahoda
2R	11479527	2R_11479527_SNP [dm3] 2R_15592022_SNP [dm6]	A	T	3.022e^-4	0.945	INTERGENIC
2L	16081867	2L_16081867_SNP [dm3] 2L_16081867_SNP [dm6]	C	T	3.030e^-4	0.945	DOWNSTREAM beat-Ia INTERGENIC
2L	4123207	2L_4123207_SNP [dm3] 2L_4123207_SNP [dm6]	A	G	3.030e^-4	0.945	SYNONYMOUS_CODING Sr-CI	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2651313	3L_2651313_SNP [dm3] 3L_2651313_SNP [dm6]	G	A	3.035e^-4	0.945	UPSTREAM Snup & 1 other INTRON Aats-pro	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	19572529	X_19572529_SNP [dm3] X_19678496_SNP [dm6]	C	A	3.039e^-4	0.945	SYNONYMOUS_CODING dome	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3354892	3L_3354892_SNP [dm3] 3L_3354892_SNP [dm6]	G	C	3.047e^-4	0.945	INTRON kst	TF binding site mE1_TFBS_cad
X	18462621	X_18462621_SNP [dm3] X_18568588_SNP [dm6]	T	A	3.062e^-4	0.945	INTRON Bx	TF binding site mE1_TFBS_chinmo
3R	10332284	3R_10332284_SNP [dm3] 3R_14506562_SNP [dm6]	C	A	3.074e^-4	0.945	INTRON CR44177
3R	20424572	3R_20424572_SNP [dm3] 3R_24598850_SNP [dm6]	A	T	3.076e^-4	0.945	INTRON mld
2R	9131354	2R_9131354_SNP [dm3] 2R_13243849_SNP [dm6]	G	A	3.080e^-4	0.945	DOWNSTREAM CR45278 INTERGENIC
3L	2657251	3L_2657251_SNP [dm3] 3L_2657251_SNP [dm6]	C	T	3.080e^-4	0.945	UTR_3_PRIME Fife	TF binding site BDTNP1_TFBS_da
X	9986183	X_9986183_INS [dm3] X_10092150_INS [dm6]	C	CA	3.083e^-4	0.945	INTRON RhoU	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10332283	3R_10332283_SNP [dm3] 3R_14506561_SNP [dm6]	A	C	3.086e^-4	0.945	INTRON CR44177
X	5646808	X_5646808_SNP [dm3] X_5752775_SNP [dm6]	C	G	3.092e^-4	0.945	DOWNSTREAM CG4078 & 1 other INTRON CG15772	TF binding site mE1_TFBS_cad
3L	2651764	3L_2651764_SNP [dm3] 3L_2651764_SNP [dm6]	G	T	3.102e^-4	0.945	UTR_5_PRIME Aats-pro UPSTREAM Snup & 1 other
X	1174991	X_1174991_SNP [dm3] X_1280958_SNP [dm6]	G	T	3.103e^-4	0.945	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	17670109	3R_17670109_SNP [dm3] 3R_21844387_SNP [dm6]	T	G	3.107e^-4	0.945	SYNONYMOUS_CODING Gr93c UPSTREAM Gr93b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8556612	3L_8556612_SNP [dm3] 3L_8563512_SNP [dm6]	C	G	3.109e^-4	0.945	INTRON rhea
2R	16957166	2R_16957166_SNP [dm3] 2R_21069661_SNP [dm6]	T	A	3.112e^-4	0.945	UPSTREAM Cht9 DOWNSTREAM CG10527 & 1 other INTERGENIC
3R	14777587	3R_14777587_SNP [dm3] 3R_18951865_SNP [dm6]	A	C	3.112e^-4	0.945	INTRON CG42613 & 1 other
2L	5883903	2L_5883903_SNP [dm3] 2L_5883903_SNP [dm6]	A	G	3.115e^-4	0.945	NON_SYNONYMOUS_CODING CG44574 UPSTREAM CG43185 DOWNSTREAM Sfp26Ac
3L	14385441	3L_14385441_SNP [dm3] 3L_14392341_SNP [dm6]	A	G	3.127e^-4	0.945	INTERGENIC
3L	2647429	3L_2647429_SNP [dm3] 3L_2647429_SNP [dm6]	T	C	3.135e^-4	0.945	UPSTREAM CG1246 DOWNSTREAM CG1143 INTERGENIC
3R	26042451	3R_26042451_SNP [dm3] 3R_30216729_SNP [dm6]	A	T	3.144e^-4	0.945	INTRON CecC
3L	2645600	3L_2645600_SNP [dm3] 3L_2645600_SNP [dm6]	A	T	3.145e^-4	0.945	INTRON CG1143	TF binding site mE1_TFBS_cad
2L	12676969	2L_12676969_SNP [dm3] 2L_12676969_SNP [dm6]	A	G	3.145e^-4	0.945	INTRON pdm2	TF binding site BDTNP1_TFBS_dl
2R	15349311	2R_15349311_SNP [dm3] 2R_19461806_SNP [dm6]	G	T	3.148e^-4	0.945	UPSTREAM par-1 INTRON par-1
2R	12212097	2R_12212097_SNP [dm3] 2R_16324592_SNP [dm6]	C	T	3.150e^-4	0.945	UTR_3_PRIME CG4282 DOWNSTREAM Vha44
2R	4613332	2R_4613332_SNP [dm3] 2R_8725827_SNP [dm6]	T	C	3.150e^-4	0.945	DOWNSTREAM snoRNA:gcl-a INTRON gcl	TF binding site mE1_TFBS_Trl
3R	18847074	3R_18847074_INS [dm3] 3R_23021352_INS [dm6]	A	GG	3.152e^-4	0.945	UTR_3_PRIME lmd
2R	15899650	2R_15899650_SNP [dm3] 2R_20012145_SNP [dm6]	A	G	3.155e^-4	0.945	INTERGENIC
2L	22139117	2L_22139117_SNP [dm3] 2L_22139117_SNP [dm6]	A	G	3.156e^-4	0.945	INTRON CG42748	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	3798751	2L_3798751_SNP [dm3] 2L_3798751_SNP [dm6]	T	C	3.158e^-4	0.945	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_sens
2R	15180587	2R_15180587_SNP [dm3] 2R_19293082_SNP [dm6]	G	A	3.163e^-4	0.945	UPSTREAM mip40 INTRON Tab2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9131360	2R_9131360_SNP [dm3] 2R_13243855_SNP [dm6]	C	T	3.167e^-4	0.945	DOWNSTREAM CR45278 INTERGENIC
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	3.173e^-4	0.946	EXON CR44950
2R	16053249	2R_16053249_SNP [dm3] 2R_20165744_SNP [dm6]	T	C	3.185e^-4	0.948	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	7001310	3L_7001310_SNP [dm3] 3L_7008210_SNP [dm6]	T	G	3.199e^-4	0.949	INTRON Mp
2L	8558273	2L_8558273_SNP [dm3] 2L_8558273_SNP [dm6]	G	T	3.202e^-4	0.949	INTRON Sema-1a	TF binding site mE1_TFBS_cad
3R	13139061	3R_13139061_SNP [dm3] 3R_17313339_SNP [dm6]	G	T	3.208e^-4	0.949	INTERGENIC
3R	15909815	3R_15909815_SNP [dm3] 3R_20084093_SNP [dm6]	C	A	3.210e^-4	0.949	INTERGENIC
2L	5293734	2L_5293734_SNP [dm3] 2L_5293734_SNP [dm6]	G	C	3.229e^-4	0.951	INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	20883778	3R_20883778_SNP [dm3] 3R_25058056_SNP [dm6]	G	T	3.236e^-4	0.951	INTRON Unc-13-4B
2R	18800568	2R_18800568_SNP [dm3] 2R_22913045_SNP [dm6]	G	T	3.237e^-4	0.951	SYNONYMOUS_CODING nahoda	TF binding site mE1_TFBS_HSA
3R	14040965	3R_14040965_SNP [dm3] 3R_18215243_SNP [dm6]	G	A	3.237e^-4	0.951	UPSTREAM CG14314 DOWNSTREAM CG7985 INTERGENIC
3L	6256771	3L_6256771_SNP [dm3] 3L_6263671_SNP [dm6]	A	T	3.244e^-4	0.951	UPSTREAM ImpL3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17836669	2R_17836669_SNP [dm3] 2R_21949164_SNP [dm6]	C	T	3.246e^-4	0.951	INTERGENIC
3R	21474866	3R_21474866_SNP [dm3] 3R_25649144_SNP [dm6]	A	G	3.251e^-4	0.951	INTRON jigr1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8113228	X_8113228_SNP [dm3] X_8219195_SNP [dm6]	T	C	3.263e^-4	0.953	INTRON sdt	TF binding site BDTNP1_TFBS_dl
3L	14388813	3L_14388813_SNP [dm3] 3L_14395713_SNP [dm6]	G	A	3.275e^-4	0.954	INTERGENIC
3R	17668804	3R_17668804_SNP [dm3] 3R_21843082_SNP [dm6]	C	T	3.277e^-4	0.954	SYNONYMOUS_CODING Gr93b DOWNSTREAM Gr93c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2594336	3L_2594336_SNP [dm3] 3L_2594336_SNP [dm6]	G	T	3.283e^-4	0.954	SYNONYMOUS_CODING dos	TF binding site mE1_TFBS_cad
2L	21782310	2L_21782310_SNP [dm3] 2L_21782310_SNP [dm6]	G	T	3.290e^-4	0.955	SYNONYMOUS_CODING CG11630 INTRON CG31612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	1732983	3L_1732983_SNP [dm3] 3L_1732983_SNP [dm6]	A	G	3.296e^-4	0.955	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	6814128	X_6814128_SNP [dm3] X_6920095_SNP [dm6]	G	A	3.318e^-4	0.959	INTRON CG14431
2R	15352602	2R_15352602_SNP [dm3] 2R_19465097_SNP [dm6]	C	A	3.324e^-4	0.959	SYNONYMOUS_CODING par-1 INTRON par-1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7370439	3L_7370439_SNP [dm3] 3L_7377339_SNP [dm6]	A	T	3.326e^-4	0.959	INTRON SMSr
X	6137320	X_6137320_SNP [dm3] X_6243287_SNP [dm6]	T	G	3.331e^-4	0.959	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2651851	3L_2651851_SNP [dm3] 3L_2651851_SNP [dm6]	G	A	3.339e^-4	0.96	UPSTREAM Snup & 2 others INTERGENIC
3L	10410622	3L_10410622_SNP [dm3] 3L_10417522_SNP [dm6]	C	G	3.344e^-4	0.96	INTERGENIC
3R	5121948	3R_5121948_SNP [dm3] 3R_9296226_SNP [dm6]	C	A	3.351e^-4	0.96	INTRON CG8861
3L	21748007	3L_21748007_SNP [dm3] 3L_21754907_SNP [dm6]	A	T	3.359e^-4	0.96	INTRON Syn1
3R	25923641	3R_25923641_SNP [dm3] 3R_30097919_SNP [dm6]	A	G	3.381e^-4	0.96	INTRON sima	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	9329916	3R_9329916_DEL [dm3] 3R_13504194_DEL [dm6]	CGATTTCGA	T	3.383e^-4	0.96	INTERGENIC
2R	12456049	2R_12456049_SNP [dm3] 2R_16568544_SNP [dm6]	T	G	3.384e^-4	0.96	INTRON CG4945	TF binding site mE1_TFBS_cad
3L	10302652	3L_10302652_SNP [dm3] 3L_10309552_SNP [dm6]	A	G	3.385e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13821335	3R_13821335_SNP [dm3] 3R_17995613_SNP [dm6]	G	A	3.396e^-4	0.96	INTRON cpo
2L	8447278	2L_8447278_SNP [dm3] 2L_8447278_SNP [dm6]	T	G	3.399e^-4	0.96	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	3574159	3L_3574159_SNP [dm3] 3L_3574159_SNP [dm6]	T	A	3.400e^-4	0.96	INTRON Eip63E
X	14170491	X_14170491_SNP [dm3] X_14276458_SNP [dm6]	A	C	3.402e^-4	0.96	NON_SYNONYMOUS_CODING na	TF binding site mE1_TFBS_cad
3R	14811766	3R_14811766_SNP [dm3] 3R_18986044_SNP [dm6]	C	T	3.408e^-4	0.96	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	6245822	3L_6245822_SNP [dm3] 3L_6252722_SNP [dm6]	C	G	3.417e^-4	0.96	INTRON Best2
3L	2651116	3L_2651116_SNP [dm3] 3L_2651116_SNP [dm6]	G	A	3.418e^-4	0.96	SYNONYMOUS_CODING Aats-pro UTR_3_PRIME Aats-pro UPSTREAM Snup & 1 other DOWNSTREAM CG1246	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	9885962	3R_9885962_SNP [dm3] 3R_14060240_SNP [dm6]	G	A	3.427e^-4	0.96	INTRON foxo
2R	7076830	2R_7076830_SNP [dm3] 2R_11189325_SNP [dm6]	C	T	3.440e^-4	0.96	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2R	9586417	2R_9586417_SNP [dm3] 2R_13698912_SNP [dm6]	C	A	3.440e^-4	0.96	INTRON fas
3L	12223151	3L_12223151_SNP [dm3] 3L_12230051_SNP [dm6]	T	A	3.451e^-4	0.96	INTRON app
2R	6019797	2R_6019797_DEL [dm3] 2R_10132292_DEL [dm6]	CA	C	3.452e^-4	0.96	INTRON gem	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6983562	3L_6983562_SNP [dm3] 3L_6990462_SNP [dm6]	A	G	3.455e^-4	0.96	UPSTREAM bin INTERGENIC	TF binding site mE1_TFBS_Trl
2R	17696993	2R_17696993_SNP [dm3] 2R_21809488_SNP [dm6]	T	C	3.471e^-4	0.96	INTERGENIC
2L	12491339	2L_12491339_SNP [dm3] 2L_12491339_SNP [dm6]	C	T	3.472e^-4	0.96	INTRON bun
3L	3100077	3L_3100077_SNP [dm3] 3L_3100077_SNP [dm6]	T	A	3.478e^-4	0.96	INTRON Cht7
3L	6256852	3L_6256852_SNP [dm3] 3L_6263752_SNP [dm6]	A	G	3.481e^-4	0.96	UPSTREAM CR44522 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24708849	3R_24708849_SNP [dm3] 3R_28883127_SNP [dm6]	A	T	3.482e^-4	0.96	UPSTREAM CG14526 DOWNSTREAM CG14527 INTRON CG33203
3R	10808595	3R_10808595_SNP [dm3] 3R_14982873_SNP [dm6]	G	A	3.483e^-4	0.96	INTERGENIC
2L	21786168	2L_21786168_DEL [dm3] 2L_21786168_DEL [dm6]	TGTTTTGATTTTTGTACTAT...	T	3.495e^-4	0.96	INTRON CG31612
3L	17456726	3L_17456726_SNP [dm3] 3L_17463626_SNP [dm6]	A	G	3.499e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	10969939	3R_10969939_SNP [dm3] 3R_15144217_SNP [dm6]	G	A	3.520e^-4	0.96	INTRON GlyS	TF binding site mE1_TFBS_cad
X	9845474	X_9845474_SNP [dm3] X_9951441_SNP [dm6]	G	T	3.535e^-4	0.96	INTERGENIC
3R	22201381	3R_22201381_SNP [dm3] 3R_26375659_SNP [dm6]	C	G	3.539e^-4	0.96	INTERGENIC
3R	11770797	3R_11770797_SNP [dm3] 3R_15945075_SNP [dm6]	C	G	3.550e^-4	0.96	INTRON Sap47
2R	4546876	2R_4546876_DEL [dm3] 2R_8659371_DEL [dm6]	TT	T	3.552e^-4	0.96	INTRON ptc	TF binding site mE1_TFBS_cad
2L	19802775	2L_19802775_SNP [dm3] 2L_19802775_SNP [dm6]	A	C	3.553e^-4	0.96	INTRON sick
2L	991648	2L_991648_SNP [dm3] 2L_991648_SNP [dm6]	C	A	3.559e^-4	0.96	UPSTREAM CR44801 INTERGENIC
3R	22844374	3R_22844374_SNP [dm3] 3R_27018652_SNP [dm6]	G	A	3.566e^-4	0.96	UTR_3_PRIME CG17191 UPSTREAM CG17192 INTRON RYa-R
X	14163567	X_14163567_SNP [dm3] X_14269534_SNP [dm6]	C	A	3.569e^-4	0.96	INTRON na
3L	4898488	3L_4898488_INS [dm3] 3L_4898488_INS [dm6]	T	TTT	3.572e^-4	0.96	UPSTREAM CG13704 DOWNSTREAM CG13705 INTERGENIC
3R	10628531	3R_10628531_SNP [dm3] 3R_14802809_SNP [dm6]	C	A	3.578e^-4	0.96	SYNONYMOUS_CODING CG14857
3L	6316404	3L_6316404_SNP [dm3] 3L_6323304_SNP [dm6]	G	T	3.580e^-4	0.96	INTERGENIC
3L	6899768	3L_6899768_SNP [dm3] 3L_6906668_SNP [dm6]	A	T	3.586e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26042450	3R_26042450_SNP [dm3] 3R_30216728_SNP [dm6]	T	A	3.593e^-4	0.96	INTRON CecC
3L	14248500	3L_14248500_SNP [dm3] 3L_14255400_SNP [dm6]	G	T	3.596e^-4	0.96	INTERGENIC
3R	14393307	3R_14393307_SNP [dm3] 3R_18567585_SNP [dm6]	C	T	3.600e^-4	0.96	INTERGENIC
3L	12851479	3L_12851479_SNP [dm3] 3L_12858379_SNP [dm6]	T	A	3.606e^-4	0.96	SYNONYMOUS_CODING CG32107 DOWNSTREAM Ent3
2L	13730345	2L_13730345_SNP [dm3] 2L_13730345_SNP [dm6]	C	A	3.609e^-4	0.96	INTERGENIC
2L	2381031	2L_2381031_SNP [dm3] 2L_2381031_SNP [dm6]	A	C	3.622e^-4	0.96	UPSTREAM Eogt DOWNSTREAM Atxn7 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2381037	2L_2381037_SNP [dm3] 2L_2381037_SNP [dm6]	T	A	3.622e^-4	0.96	UPSTREAM Eogt DOWNSTREAM Atxn7 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1733503	3L_1733503_SNP [dm3] 3L_1733503_SNP [dm6]	G	A	3.627e^-4	0.96	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2734762	2L_2734762_SNP [dm3] 2L_2734762_SNP [dm6]	C	T	3.634e^-4	0.96	INTRON CG31689
3R	17668603	3R_17668603_SNP [dm3] 3R_21842881_SNP [dm6]	A	G	3.637e^-4	0.96	SYNONYMOUS_CODING Gr93b	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
X	2933663	X_2933663_SNP [dm3] X_3039630_SNP [dm6]	C	T	3.649e^-4	0.96	INTRON kirre
3L	11650776	3L_11650776_SNP [dm3] 3L_11657676_SNP [dm6]	G	A	3.650e^-4	0.96	DOWNSTREAM mir-274 INTRON CG32085
2R	15876060	2R_15876060_SNP [dm3] 2R_19988555_SNP [dm6]	C	T	3.654e^-4	0.96	INTERGENIC
X	8806488	X_8806488_INS [dm3] X_8912455_INS [dm6]	A	AAGTCCAAACAAA...	3.660e^-4	0.96	UTR_5_PRIME rdgA INTRON rdgA
3R	14811767	3R_14811767_SNP [dm3] 3R_18986045_SNP [dm6]	T	C	3.664e^-4	0.96	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	9845468	X_9845468_SNP [dm3] X_9951435_SNP [dm6]	C	A	3.665e^-4	0.96	INTERGENIC
X	8113222	X_8113222_SNP [dm3] X_8219189_SNP [dm6]	C	A	3.667e^-4	0.96	INTRON sdt	TF binding site BDTNP1_TFBS_dl
3R	8566506	3R_8566506_SNP [dm3] 3R_12740784_SNP [dm6]	T	C	3.670e^-4	0.96	NON_SYNONYMOUS_CODING CG5724	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12730661	3L_12730661_SNP [dm3] 3L_12737561_SNP [dm6]	T	C	3.670e^-4	0.96	SYNONYMOUS_CODING Ptp69D	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	22141830	2L_22141830_SNP [dm3] 2L_22141830_SNP [dm6]	G	A	3.671e^-4	0.96	SPLICE_SITE_ACCEPTOR CG42748 SPLICE_SITE_REGION CG42748 INTRON CG42748	TF binding site mE1_TFBS_cad
3L	14385458	3L_14385458_SNP [dm3] 3L_14392358_SNP [dm6]	A	G	3.678e^-4	0.96	INTERGENIC
3L	9241195	3L_9241195_SNP [dm3] 3L_9248095_SNP [dm6]	C	A	3.683e^-4	0.96	INTERGENIC
X	15422753	X_15422753_SNP [dm3] X_15528720_SNP [dm6]	T	C	3.689e^-4	0.96	INTRON Ac13E
3R	24825558	3R_24825558_SNP [dm3] 3R_28999836_SNP [dm6]	C	A	3.692e^-4	0.96	INTRON wat
3R	14391194	3R_14391194_SNP [dm3] 3R_18565472_SNP [dm6]	G	C	3.693e^-4	0.96	UPSTREAM CG43210 & 1 other INTERGENIC
3R	13163039	3R_13163039_DEL [dm3] 3R_17337317_DEL [dm6]	CTAAATGAGCCGTTGGC...	C	3.700e^-4	0.96	INTRON beat-IIa
3R	22784083	3R_22784083_SNP [dm3] 3R_26958361_SNP [dm6]	T	C	3.725e^-4	0.96	START_GAINED CG6330 UTR_5_PRIME CG6330
2R	1787294	2R_1787294_SNP [dm3] 2R_5899789_SNP [dm6]	G	T	3.731e^-4	0.96	INTRON CG43366	TF binding site mE1_TFBS_Trl
3R	15200598	3R_15200598_SNP [dm3] 3R_19374876_SNP [dm6]	A	T	3.741e^-4	0.96	UPSTREAM CG3581 DOWNSTREAM CG31404 INTRON Ino80
2R	12821182	2R_12821182_DEL [dm3] 2R_16933677_DEL [dm6]	TTC	T	3.743e^-4	0.96	INTRON Pkc53E	TF binding site BDTNP1_TFBS_twi
2L	21307375	2L_21307375_SNP [dm3] 2L_21307375_SNP [dm6]	G	A	3.753e^-4	0.96	INTRON Mio
2R	17775733	2R_17775733_SNP [dm3] 2R_21888228_SNP [dm6]	C	T	3.754e^-4	0.96	INTRON Fili
2R	19337409	2R_19337409_SNP [dm3] 2R_23449886_SNP [dm6]	G	A	3.756e^-4	0.96	INTRON CG43795
2R	17696520	2R_17696520_DEL [dm3] 2R_21809015_DEL [dm6]	TT	T	3.762e^-4	0.96	INTERGENIC
X	21092825	X_21092825_DEL [dm3] X_21221798_DEL [dm6]	TAT	T	3.766e^-4	0.96	INTRON CG32521
3L	13993525	3L_13993525_SNP [dm3] 3L_14000425_SNP [dm6]	G	A	3.774e^-4	0.96	SYNONYMOUS_CODING CG8783	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2781167	3L_2781167_SNP [dm3] 3L_2781167_SNP [dm6]	A	G	3.778e^-4	0.96	DOWNSTREAM Atg2 INTRON mRpS35	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_ttk
2L	14763113	2L_14763113_SNP [dm3] 2L_14763113_SNP [dm6]	A	G	3.789e^-4	0.96	NON_SYNONYMOUS_CODING CSN1a DOWNSTREAM CR44858
2R	12538806	2R_12538806_SNP [dm3] 2R_16651301_SNP [dm6]	G	A	3.792e^-4	0.96	SYNONYMOUS_CODING Amyrel DOWNSTREAM gprs	TF binding site mE1_TFBS_cad
3R	15208369	3R_15208369_SNP [dm3] 3R_19382647_SNP [dm6]	A	G	3.806e^-4	0.96	INTRON Ino80
2L	12676943	2L_12676943_SNP [dm3] 2L_12676943_SNP [dm6]	A	T	3.810e^-4	0.96	INTRON pdm2	TF binding site BDTNP1_TFBS_dl
3R	19952709	3R_19952709_SNP [dm3] 3R_24126987_SNP [dm6]	T	C	3.815e^-4	0.96	SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad
2R	13195840	2R_13195840_SNP [dm3] 2R_17308335_SNP [dm6]	G	T	3.817e^-4	0.96	INTRON mbl
3L	14931260	3L_14931260_SNP [dm3] 3L_14938160_SNP [dm6]	G	C	3.822e^-4	0.96	INTRON DCX-EMAP
2R	11119346	2R_11119346_SNP [dm3] 2R_15231841_SNP [dm6]	T	C	3.831e^-4	0.96	INTRON Fs EXON CR44370	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	8928280	2L_8928280_SNP [dm3] 2L_8928280_SNP [dm6]	A	C	3.831e^-4	0.96	SYNONYMOUS_CODING CG34398 INTRON CG34398	TF binding site mE1_TFBS_cad
3L	3950703	3L_3950703_SNP [dm3] 3L_3950703_SNP [dm6]	T	G	3.849e^-4	0.96	DOWNSTREAM CG14984 INTERGENIC
2L	14243733	2L_14243733_SNP [dm3] 2L_14243733_SNP [dm6]	G	T	3.850e^-4	0.96	INTERGENIC
2L	5294173	2L_5294173_SNP [dm3] 2L_5294173_SNP [dm6]	A	G	3.856e^-4	0.96	INTRON vri	TF binding site BDTNP1_TFBS_dl
3L	11439252	3L_11439252_SNP [dm3] 3L_11446152_SNP [dm6]	G	T	3.856e^-4	0.96	NON_SYNONYMOUS_CODING CG7557
2R	15903310	2R_15903310_DEL [dm3] 2R_20015805_DEL [dm6]	TGA	T	3.856e^-4	0.96	DOWNSTREAM CR44630 INTERGENIC
2R	8133308	2R_8133308_INS [dm3] 2R_12245803_INS [dm6]	A	AA	3.872e^-4	0.96	DOWNSTREAM CR44315 INTERGENIC
2L	21775574	2L_21775574_INS [dm3] 2L_21775574_INS [dm6]	A	ATC	3.877e^-4	0.96	INTRON CG31612	TF binding site mE1_TFBS_HSA transposable element FlyBase
2L	11185606	2L_11185606_SNP [dm3] 2L_11185606_SNP [dm6]	T	C	3.887e^-4	0.96	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	17548889	2R_17548889_SNP [dm3] 2R_21661384_SNP [dm6]	T	G	3.892e^-4	0.96	SYNONYMOUS_CODING pirk
X	13012084	X_13012084_SNP [dm3] X_13118051_SNP [dm6]	T	C	3.899e^-4	0.96	INTRON CG42237
3L	2650972	3L_2650972_SNP [dm3] 3L_2650972_SNP [dm6]	A	T	3.907e^-4	0.96	DOWNSTREAM CG1246 INTRON Aats-pro
3R	5706111	3R_5706111_SNP [dm3] 3R_9880389_SNP [dm6]	T	G	3.908e^-4	0.96	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14095629	2R_14095629_SNP [dm3] 2R_18208124_SNP [dm6]	T	C	3.910e^-4	0.96	NON_SYNONYMOUS_CODING CG30114
3L	12864171	3L_12864171_SNP [dm3] 3L_12871071_SNP [dm6]	G	A	3.922e^-4	0.96	INTERGENIC
2R	15899625	2R_15899625_SNP [dm3] 2R_20012120_SNP [dm6]	A	G	3.928e^-4	0.96	INTERGENIC
3L	16818256	3L_16818256_SNP [dm3] 3L_16825156_SNP [dm6]	G	A	3.942e^-4	0.96	INTRON CG13024
3L	12835678	3L_12835678_SNP [dm3] 3L_12842578_SNP [dm6]	T	A	3.944e^-4	0.96	INTRON CG10960	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	21780606	2L_21780606_DEL [dm3] 2L_21780606_DEL [dm6]	CTT	C	3.945e^-4	0.96	INTRON CG31612	TF binding site BDTNP1_TFBS_twi
3L	12845829	3L_12845829_SNP [dm3] 3L_12852729_SNP [dm6]	G	A	3.948e^-4	0.96	UPSTREAM Ent3 DOWNSTREAM Wbp2 INTRON Wbp2
3L	16818253	3L_16818253_SNP [dm3] 3L_16825153_SNP [dm6]	A	G	3.948e^-4	0.96	INTRON CG13024
X	13041242	X_13041242_SNP [dm3] X_13147209_SNP [dm6]	A	G	3.957e^-4	0.96	INTRON CG32645
3R	24710863	3R_24710863_SNP [dm3] 3R_28885141_SNP [dm6]	C	G	3.964e^-4	0.96	SYNONYMOUS_CODING CG14526 INTRON CG33203	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12535249	2R_12535249_SNP [dm3] 2R_16647744_SNP [dm6]	A	C	3.964e^-4	0.96	SYNONYMOUS_CODING gprs UTR_3_PRIME gprs INTRON gprs	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4635561	2R_4635561_SNP [dm3] 2R_8748056_SNP [dm6]	C	T	3.971e^-4	0.96	UPSTREAM CG8740 INTRON CG8740
3L	10881026	3L_10881026_SNP [dm3] 3L_10887926_SNP [dm6]	C	A	3.978e^-4	0.96	INTERGENIC
3R	17668600	3R_17668600_SNP [dm3] 3R_21842878_SNP [dm6]	G	A	3.983e^-4	0.96	SYNONYMOUS_CODING Gr93b	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	17624822	3L_17624822_SNP [dm3] 3L_17631722_SNP [dm6]	G	C	3.988e^-4	0.96	DOWNSTREAM CG7510 EXON CR44566
3L	7373521	3L_7373521_SNP [dm3] 3L_7380421_SNP [dm6]	A	C	3.993e^-4	0.96	INTRON SMSr
X	3381344	X_3381344_SNP [dm3] X_3487311_SNP [dm6]	T	C	3.998e^-4	0.96	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_sens
X	5850243	X_5850243_SNP [dm3] X_5956210_SNP [dm6]	T	G	4.000e^-4	0.96	INTRON CG6067
X	5850244	X_5850244_SNP [dm3] X_5956211_SNP [dm6]	T	G	4.000e^-4	0.96	INTRON CG6067
3L	6248388	3L_6248388_SNP [dm3] 3L_6255288_SNP [dm6]	T	G	4.004e^-4	0.96	INTRON Best2
3R	6647730	3R_6647730_SNP [dm3] 3R_10822008_SNP [dm6]	T	C	4.016e^-4	0.96	INTERGENIC
2R	1323727	2R_1323727_SNP [dm3] 2R_5436222_SNP [dm6]	A	T	4.022e^-4	0.96	SYNONYMOUS_CODING laccase2
3L	13239943	3L_13239943_SNP [dm3] 3L_13246843_SNP [dm6]	T	A	4.026e^-4	0.96	DOWNSTREAM CG32119 INTRON caps
2R	11804667	2R_11804667_SNP [dm3] 2R_15917162_SNP [dm6]	T	G	4.027e^-4	0.96	DOWNSTREAM CR44373 INTRON sli	TF binding site mE1_TFBS_cad
2R	20211874	2R_20211874_SNP [dm3] 2R_24324351_SNP [dm6]	A	C	4.038e^-4	0.96	UPSTREAM CR44810 INTERGENIC
3R	16387040	3R_16387040_SNP [dm3] 3R_20561318_SNP [dm6]	A	T	4.059e^-4	0.96	START_GAINED CG5191 UTR_5_PRIME CG5191 INTRON CG5191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10501789	X_10501789_SNP [dm3] X_10607756_SNP [dm6]	A	C	4.068e^-4	0.96	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	9986506	X_9986506_SNP [dm3] X_10092473_SNP [dm6]	C	T	4.083e^-4	0.96	INTRON RhoU	TF binding site BDTNP1_TFBS_dl
2R	9109903	2R_9109903_SNP [dm3] 2R_13222398_SNP [dm6]	T	C	4.086e^-4	0.96	UTR_5_PRIME Fsn UPSTREAM Dp & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2R	16916931	2R_16916931_SNP [dm3] 2R_21029426_SNP [dm6]	A	C	4.086e^-4	0.96	EXON CR45148
3L	9717919	3L_9717919_SNP [dm3] 3L_9724819_SNP [dm6]	A	G	4.088e^-4	0.96	SYNONYMOUS_CODING defl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18812500	2L_18812500_DEL [dm3] 2L_18812500_DEL [dm6]	GACACACAGTTCAATAA...	CG	4.088e^-4	0.96	UPSTREAM CG17325 & 1 other INTERGENIC
2R	17809577	2R_17809577_SNP [dm3] 2R_21922072_SNP [dm6]	C	G	4.095e^-4	0.96	INTRON Fili
3R	10969950	3R_10969950_SNP [dm3] 3R_15144228_SNP [dm6]	C	T	4.096e^-4	0.96	INTRON GlyS	TF binding site mE1_TFBS_cad
2L	18908808	2L_18908808_SNP [dm3] 2L_18908808_SNP [dm6]	G	T	4.098e^-4	0.96	INTERGENIC
2L	7969107	2L_7969107_SNP [dm3] 2L_7969107_SNP [dm6]	A	T	4.101e^-4	0.96	INTRON Snoo
X	675975	X_675975_SNP [dm3] X_781942_SNP [dm6]	G	C	4.113e^-4	0.96	NON_SYNONYMOUS_CODING fz3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	15951164	3R_15951164_SNP [dm3] 3R_20125442_SNP [dm6]	C	T	4.114e^-4	0.96	INTERGENIC
2L	5758264	2L_5758264_SNP [dm3] 2L_5758264_SNP [dm6]	A	C	4.125e^-4	0.96	INTRON CG11030	TF binding site mE1_TFBS_cad
2L	3370865	2L_3370865_SNP [dm3] 2L_3370865_SNP [dm6]	C	T	4.136e^-4	0.96	INTRON CG34394
X	13204570	X_13204570_SNP [dm3] X_13310537_SNP [dm6]	A	T	4.143e^-4	0.96	INTRON IP3K2
3L	916505	3L_916505_SNP [dm3] 3L_916505_SNP [dm6]	C	T	4.145e^-4	0.96	INTRON Glut1
2R	13855133	2R_13855133_SNP [dm3] 2R_17967628_SNP [dm6]	C	T	4.157e^-4	0.96	INTERGENIC
3L	6255602	3L_6255602_SNP [dm3] 3L_6262502_SNP [dm6]	C	T	4.158e^-4	0.96	DOWNSTREAM CR44522 INTRON ImpL3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	22486109	3R_22486109_SNP [dm3] 3R_26660387_SNP [dm6]	A	G	4.162e^-4	0.96	INTRON beat-VII
3L	7378396	3L_7378396_SNP [dm3] 3L_7385296_SNP [dm6]	G	A	4.175e^-4	0.96	DOWNSTREAM CG8564 INTRON smid
2R	15099926	2R_15099926_SNP [dm3] 2R_19212421_SNP [dm6]	T	C	4.176e^-4	0.96	INTRON hppy	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	18462720	X_18462720_SNP [dm3] X_18568687_SNP [dm6]	A	T	4.186e^-4	0.96	INTRON Bx	TF binding site mE1_TFBS_chinmo
X	21128698	X_21128698_SNP [dm3] X_21257671_SNP [dm6]	G	A	4.187e^-4	0.96	INTRON CG32521
3L	6023720	3L_6023720_INS [dm3] 3L_6030620_INS [dm6]	TG	GAAGGA	4.194e^-4	0.96	INTERGENIC
X	20039248	X_20039248_SNP [dm3] X_20145215_SNP [dm6]	C	G	4.196e^-4	0.96	INTERGENIC
X	5850241	X_5850241_INS [dm3] X_5956208_INS [dm6]	G	GT	4.198e^-4	0.96	INTRON CG6067
2R	12543337	2R_12543337_SNP [dm3] 2R_16655832_SNP [dm6]	G	A	4.203e^-4	0.96	SYNONYMOUS_CODING Picot UPSTREAM Nach	TF binding site mE1_TFBS_cad
X	2690048	X_2690048_SNP [dm3] X_2796015_SNP [dm6]	A	C	4.224e^-4	0.96	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	13605103	2L_13605103_DEL [dm3] 2L_13605103_DEL [dm6]	GTTGAGACCCACTCGGTTCA...	G	4.225e^-4	0.96	INTRON kuz
2L	4836296	2L_4836296_SNP [dm3] 2L_4836296_SNP [dm6]	A	T	4.233e^-4	0.96	UPSTREAM Ir25a INTRON tank
X	17313839	X_17313839_SNP [dm3] X_17419806_SNP [dm6]	G	A	4.251e^-4	0.96	SYNONYMOUS_CODING CG8611	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6254404	3L_6254404_SNP [dm3] 3L_6261304_SNP [dm6]	T	A	4.251e^-4	0.96	UPSTREAM ImpL3 INTRON ImpL3
2L	5869152	2L_5869152_SNP [dm3] 2L_5869152_SNP [dm6]	T	A	4.258e^-4	0.96	INTRON rau
X	8014905	X_8014905_SNP [dm3] X_8120872_SNP [dm6]	T	C	4.260e^-4	0.96	NON_SYNONYMOUS_CODING CG2260 DOWNSTREAM cyr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	10808597	3R_10808597_SNP [dm3] 3R_14982875_SNP [dm6]	G	T	4.261e^-4	0.96	INTERGENIC
3L	5970001	3L_5970001_SNP [dm3] 3L_5976901_SNP [dm6]	G	C	4.270e^-4	0.96	UPSTREAM CG10479 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	12037239	3L_12037239_SNP [dm3] 3L_12044139_SNP [dm6]	A	C	4.278e^-4	0.96	NON_SYNONYMOUS_CODING CG6793 UPSTREAM CG43638 INTRON rols
2R	9359419	2R_9359419_SNP [dm3] 2R_13471914_SNP [dm6]	C	A	4.290e^-4	0.96	INTRON arr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12327903	2L_12327903_SNP [dm3] 2L_12327903_SNP [dm6]	G	A	4.293e^-4	0.96	INTERGENIC
X	675856	X_675856_SNP [dm3] X_781823_SNP [dm6]	A	G	4.302e^-4	0.96	SYNONYMOUS_CODING fz3	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	14139459	X_14139459_SNP [dm3] X_14245426_SNP [dm6]	A	T	4.304e^-4	0.96	INTRON CG32599
2L	9192767	2L_9192767_SNP [dm3] 2L_9192767_SNP [dm6]	C	A	4.308e^-4	0.96	INTRON tai
X	14154489	X_14154489_SNP [dm3] X_14260456_SNP [dm6]	T	A	4.313e^-4	0.96	UPSTREAM CG1461 INTERGENIC
X	5850108	X_5850108_INS [dm3] X_5956075_INS [dm6]	G	GAT	4.317e^-4	0.96	INTRON CG6067
X	16709850	X_16709850_SNP [dm3] X_16815817_SNP [dm6]	A	G	4.321e^-4	0.96	INTRON CG4829 EXON CR44129
X	3967857	X_3967857_SNP [dm3] X_4073824_SNP [dm6]	G	T	4.324e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	7742855	2L_7742855_SNP [dm3] 2L_7742855_SNP [dm6]	T	C	4.331e^-4	0.96	DOWNSTREAM CG7214 INTERGENIC
3R	25317005	3R_25317005_MNP [dm3] 3R_29491283_MNP [dm6]	TTTA	GCAT	4.334e^-4	0.96	UTR_3_PRIME CG2006 UPSTREAM Spase12 DOWNSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	19772216	2L_19772216_SNP [dm3] 2L_19772216_SNP [dm6]	T	A	4.336e^-4	0.96	INTERGENIC
X	17275368	X_17275368_SNP [dm3] X_17381335_SNP [dm6]	T	C	4.345e^-4	0.96	INTERGENIC
2R	19905502	2R_19905502_SNP [dm3] 2R_24017979_SNP [dm6]	T	C	4.356e^-4	0.96	SYNONYMOUS_CODING CG3121 UPSTREAM CG4324	TF binding site BDTNP1_TFBS_twi
3R	12082373	3R_12082373_SNP [dm3] 3R_16256651_SNP [dm6]	A	T	4.358e^-4	0.96	INTRON tara	TF binding site mE1_TFBS_cad mE1_TFBS_eve
2R	6671281	2R_6671281_SNP [dm3] 2R_10783776_SNP [dm6]	T	C	4.359e^-4	0.96	UPSTREAM CG33144 INTRON CG33144 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	8925629	2L_8925629_SNP [dm3] 2L_8925629_SNP [dm6]	T	C	4.360e^-4	0.96	SYNONYMOUS_CODING CG34398	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18479973	3R_18479973_SNP [dm3] 3R_22654251_SNP [dm6]	C	T	4.364e^-4	0.96	INTRON CG45058
X	7461526	X_7461526_SNP [dm3] X_7567493_SNP [dm6]	G	A	4.370e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	21186471	2L_21186471_SNP [dm3] 2L_21186471_SNP [dm6]	C	T	4.371e^-4	0.96	INTRON Ret
3R	25317012	3R_25317012_SNP [dm3] 3R_29491290_SNP [dm6]	T	A	4.372e^-4	0.96	UTR_3_PRIME CG2006 UPSTREAM Spase12 DOWNSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	9716322	3L_9716322_SNP [dm3] 3L_9723222_SNP [dm6]	A	T	4.376e^-4	0.96	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	4.378e^-4	0.96	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9845100	X_9845100_SNP [dm3] X_9951067_SNP [dm6]	A	C	4.378e^-4	0.96	INTERGENIC
2L	21370604	2L_21370604_SNP [dm3] 2L_21370604_SNP [dm6]	A	T	4.379e^-4	0.96	UPSTREAM Gr39b & 1 other INTERGENIC
2R	3261299	2R_3261299_DEL [dm3] 2R_7373794_DEL [dm6]	TGAAT	T	4.381e^-4	0.96	INTRON Dscam1	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	18462391	X_18462391_SNP [dm3] X_18568358_SNP [dm6]	T	A	4.384e^-4	0.96	INTRON Bx
3L	13457308	3L_13457308_SNP [dm3] 3L_13464208_SNP [dm6]	C	T	4.395e^-4	0.96	SYNONYMOUS_CODING CG10738	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25558995	3R_25558995_SNP [dm3] 3R_29733273_SNP [dm6]	A	G	4.396e^-4	0.96	UTR_3_PRIME Kul
2L	6328394	2L_6328394_SNP [dm3] 2L_6328394_SNP [dm6]	A	G	4.398e^-4	0.96	SYNONYMOUS_CODING PDZ-GEF	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	19156641	2L_19156641_SNP [dm3] 2L_19156641_SNP [dm6]	A	T	4.399e^-4	0.96	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	10548314	2R_10548314_INS [dm3] 2R_14660809_INS [dm6]	A	AA	4.404e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12907959	X_12907959_SNP [dm3] X_13013926_SNP [dm6]	G	C	4.405e^-4	0.96	INTRON rad
X	22359715	X_22359715_SNP [dm3] X_22957879_SNP [dm6]	A	C	4.405e^-4	0.96	DOWNSTREAM CR45502 & 1 other INTERGENIC
2L	10237153	2L_10237153_SNP [dm3] 2L_10237153_SNP [dm6]	G	A	4.419e^-4	0.96	SYNONYMOUS_CODING mthl15
X	2853018	X_2853018_SNP [dm3] X_2958985_SNP [dm6]	A	G	4.427e^-4	0.96	INTRON kirre & 1 other	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	15099925	2R_15099925_SNP [dm3] 2R_19212420_SNP [dm6]	T	A	4.435e^-4	0.96	INTRON hppy	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	20355319	2R_20355319_SNP [dm3] 2R_24467796_SNP [dm6]	T	C	4.439e^-4	0.96	INTRON CG13579
2L	11971906	2L_11971906_SNP [dm3] 2L_11971906_SNP [dm6]	A	T	4.440e^-4	0.96	UPSTREAM CR43314 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	8547701	3L_8547701_SNP [dm3] 3L_8554601_SNP [dm6]	A	G	4.442e^-4	0.96	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8547718	3L_8547718_SNP [dm3] 3L_8554618_SNP [dm6]	C	A	4.442e^-4	0.96	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13014368	3R_13014368_SNP [dm3] 3R_17188646_SNP [dm6]	C	T	4.444e^-4	0.96	INTRON Mur89F
3L	9138799	3L_9138799_SNP [dm3] 3L_9145699_SNP [dm6]	A	T	4.456e^-4	0.96	DOWNSTREAM Rdl & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	6563273	2R_6563273_INS [dm3] 2R_10675768_INS [dm6]	C	CCTT	4.458e^-4	0.96	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6254145	3L_6254145_SNP [dm3] 3L_6261045_SNP [dm6]	C	A	4.461e^-4	0.96	UPSTREAM ImpL3 INTRON ImpL3
2R	14693662	2R_14693662_SNP [dm3] 2R_18806157_SNP [dm6]	G	C	4.468e^-4	0.96	INTRON CR44468 EXON CR44468	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	21133664	2L_21133664_SNP [dm3] 2L_21133664_SNP [dm6]	G	C	4.475e^-4	0.96	UTR_3_PRIME Nhe2 DOWNSTREAM Nhe2 & 1 other
2R	12457959	2R_12457959_SNP [dm3] 2R_16570454_SNP [dm6]	T	C	4.479e^-4	0.96	DOWNSTREAM CG4945 INTRON RpS15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17696948	2R_17696948_SNP [dm3] 2R_21809443_SNP [dm6]	C	T	4.495e^-4	0.96	INTERGENIC
3L	3360060	3L_3360060_SNP [dm3] 3L_3360060_SNP [dm6]	T	A	4.499e^-4	0.96	SYNONYMOUS_CODING kst
3L	12208358	3L_12208358_SNP [dm3] 3L_12215258_SNP [dm6]	T	G	4.511e^-4	0.96	UPSTREAM app INTRON app	TF binding site mE1_TFBS_chinmo
3L	7375633	3L_7375633_SNP [dm3] 3L_7382533_SNP [dm6]	C	T	4.512e^-4	0.96	SYNONYMOUS_CODING smid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	15135061	X_15135061_SNP [dm3] X_15241028_SNP [dm6]	G	C	4.531e^-4	0.96	INTERGENIC
3R	22486102	3R_22486102_SNP [dm3] 3R_26660380_SNP [dm6]	A	T	4.534e^-4	0.96	INTRON beat-VII
X	20215234	X_20215234_SNP [dm3] X_20344207_SNP [dm6]	C	A	4.534e^-4	0.96	INTERGENIC	transposable element FlyBase
X	14524463	X_14524463_SNP [dm3] X_14630430_SNP [dm6]	A	G	4.534e^-4	0.96	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14538225	X_14538225_SNP [dm3] X_14644192_SNP [dm6]	C	T	4.547e^-4	0.96	INTRON NetA
3L	902406	3L_902406_SNP [dm3] 3L_902406_SNP [dm6]	G	A	4.575e^-4	0.96	UPSTREAM CG13905 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	16458979	2R_16458979_SNP [dm3] 2R_20571474_SNP [dm6]	A	T	4.579e^-4	0.96	INTRON qsm
X	1192840	X_1192840_SNP [dm3] X_1298807_SNP [dm6]	G	A	4.581e^-4	0.96	UPSTREAM CG32811 INTRON DAAM	TF binding site mE1_TFBS_chinmo
X	559630	X_559630_INS [dm3] X_665597_INS [dm6]	T	TGAATCTC	4.584e^-4	0.96	INTERGENIC	transposable element FlyBase
3L	7909123	3L_7909123_SNP [dm3] 3L_7916023_SNP [dm6]	G	C	4.586e^-4	0.96	UPSTREAM CG8111 DOWNSTREAM syd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	11511827	3R_11511827_SNP [dm3] 3R_15686105_SNP [dm6]	A	T	4.598e^-4	0.96	INTRON pxb	TF binding site BDTNP1_TFBS_hb
2R	16053170	2R_16053170_SNP [dm3] 2R_20165665_SNP [dm6]	T	C	4.603e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	6494322	3R_6494322_SNP [dm3] 3R_10668600_SNP [dm6]	T	C	4.603e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11922558	3L_11922558_SNP [dm3] 3L_11929458_SNP [dm6]	G	C	4.611e^-4	0.96	INTRON CG44837 & 1 other
2R	16361025	2R_16361025_SNP [dm3] 2R_20473520_SNP [dm6]	A	C	4.617e^-4	0.96	INTRON CG12484
3L	7369219	3L_7369219_SNP [dm3] 3L_7376119_SNP [dm6]	G	C	4.619e^-4	0.96	INTRON SMSr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	18769793	2R_18769793_SNP [dm3] 2R_22882270_SNP [dm6]	G	A	4.626e^-4	0.96	DOWNSTREAM PIP5K59B & 1 other INTRON CG3501	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15903063	2R_15903063_SNP [dm3] 2R_20015558_SNP [dm6]	A	C	4.634e^-4	0.96	DOWNSTREAM CR44629 & 1 other INTERGENIC
3L	12833278	3L_12833278_SNP [dm3] 3L_12840178_SNP [dm6]	A	T	4.640e^-4	0.96	INTRON CG10960
3R	9326968	3R_9326968_SNP [dm3] 3R_13501246_SNP [dm6]	A	C	4.649e^-4	0.96	INTERGENIC
3R	17797982	3R_17797982_SNP [dm3] 3R_21972260_SNP [dm6]	G	T	4.653e^-4	0.96	UPSTREAM Eip93F INTRON Eip93F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	17368637	X_17368637_SNP [dm3] X_17474604_SNP [dm6]	C	T	4.663e^-4	0.96	INTRON CG43658
X	12908138	X_12908138_SNP [dm3] X_13014105_SNP [dm6]	G	A	4.668e^-4	0.96	INTRON rad
3R	6768987	3R_6768987_SNP [dm3] 3R_10943265_SNP [dm6]	T	C	4.669e^-4	0.96	INTERGENIC
3R	17861398	3R_17861398_SNP [dm3] 3R_22035676_SNP [dm6]	T	C	4.670e^-4	0.96	UPSTREAM pit & 1 other DOWNSTREAM Fadd INTRON pit	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3015698	2L_3015698_SNP [dm3] 2L_3015698_SNP [dm6]	T	A	4.681e^-4	0.96	UTR_3_PRIME CG17265 DOWNSTREAM CG17224	TF binding site BDTNP1_TFBS_twi
2L	1712085	2L_1712085_SNP [dm3] 2L_1712085_SNP [dm6]	T	C	4.682e^-4	0.96	SPLICE_SITE_REGION frtz SYNONYMOUS_CODING frtz DOWNSTREAM mRpL48	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12842508	3L_12842508_SNP [dm3] 3L_12849408_SNP [dm6]	T	G	4.683e^-4	0.96	SYNONYMOUS_CODING CG10948 UPSTREAM Wbp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	4363255	3R_4363255_SNP [dm3] 3R_8537533_SNP [dm6]	A	G	4.690e^-4	0.96	INTERGENIC
X	1174752	X_1174752_SNP [dm3] X_1280719_SNP [dm6]	T	G	4.696e^-4	0.96	INTERGENIC
X	15424532	X_15424532_DEL [dm3] X_15530499_DEL [dm6]	GAGGGAAGCTATG...	G	4.714e^-4	0.96	INTRON Ac13E
3L	6256680	3L_6256680_SNP [dm3] 3L_6263580_SNP [dm6]	A	T	4.726e^-4	0.96	UPSTREAM ImpL3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	15510447	X_15510447_SNP [dm3] X_15616414_SNP [dm6]	C	T	4.728e^-4	0.96	INTRON sog
3L	4854515	3L_4854515_SNP [dm3] 3L_4854515_SNP [dm6]	A	G	4.729e^-4	0.96	INTERGENIC
3L	2647352	3L_2647352_SNP [dm3] 3L_2647352_SNP [dm6]	T	G	4.737e^-4	0.96	UPSTREAM CG1246 DOWNSTREAM CG1143 INTERGENIC
3R	25617603	3R_25617603_SNP [dm3] 3R_29791881_SNP [dm6]	G	T	4.753e^-4	0.96	SYNONYMOUS_CODING kay	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9481166	3R_9481166_SNP [dm3] 3R_13655444_SNP [dm6]	C	T	4.754e^-4	0.96	SYNONYMOUS_CODING Rbp4 DOWNSTREAM rin
3R	13115561	3R_13115561_SNP [dm3] 3R_17289839_SNP [dm6]	G	A	4.756e^-4	0.96	INTERGENIC
X	14374497	X_14374497_SNP [dm3] X_14480464_SNP [dm6]	A	C	4.765e^-4	0.96	UPSTREAM CG9411 INTERGENIC
X	14524468	X_14524468_SNP [dm3] X_14630435_SNP [dm6]	A	T	4.770e^-4	0.96	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	27187729	3R_27187729_SNP [dm3] 3R_31362007_SNP [dm6]	A	T	4.771e^-4	0.96	SYNONYMOUS_CODING CG34347	TF binding site mE1_TFBS_chinmo
3R	20433862	3R_20433862_SNP [dm3] 3R_24608140_SNP [dm6]	G	A	4.773e^-4	0.96	INTRON mld
3R	19952735	3R_19952735_SNP [dm3] 3R_24127013_SNP [dm6]	T	A	4.779e^-4	0.96	NON_SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad
2L	18204282	2L_18204282_SNP [dm3] 2L_18204282_SNP [dm6]	A	G	4.786e^-4	0.96	SYNONYMOUS_CODING CG42750	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21272056	3R_21272056_SNP [dm3] 3R_25446334_SNP [dm6]	C	G	4.803e^-4	0.96	INTRON Fur1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18769483	2R_18769483_SNP [dm3] 2R_22881960_SNP [dm6]	A	G	4.818e^-4	0.96	DOWNSTREAM PIP5K59B & 1 other INTRON CG3501	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3100206	3L_3100206_SNP [dm3] 3L_3100206_SNP [dm6]	G	A	4.820e^-4	0.96	INTRON Cht7
2R	12821128	2R_12821128_SNP [dm3] 2R_16933623_SNP [dm6]	T	C	4.824e^-4	0.96	INTRON Pkc53E	TF binding site BDTNP1_TFBS_twi
X	14224980	X_14224980_SNP [dm3] X_14330947_SNP [dm6]	G	A	4.831e^-4	0.96	INTRON dpr8
2L	21786325	2L_21786325_DEL [dm3] 2L_21786325_DEL [dm6]	TT	T	4.833e^-4	0.96	INTRON CG31612	transposable element FlyBase
2R	9495414	2R_9495414_INS [dm3] 2R_13607909_INS [dm6]	T	TGATA	4.839e^-4	0.96	DOWNSTREAM CG12464 INTERGENIC
X	2926643	X_2926643_SNP [dm3] X_3032610_SNP [dm6]	C	T	4.844e^-4	0.96	INTRON kirre
3R	18614468	3R_18614468_SNP [dm3] 3R_22788746_SNP [dm6]	A	T	4.844e^-4	0.96	NON_SYNONYMOUS_CODING CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17615966	2R_17615966_DEL [dm3] 2R_21728461_DEL [dm6]	ATACA	A	4.849e^-4	0.96	UPSTREAM CR44750 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	2033407	3R_2033407_SNP [dm3] 3R_6207685_SNP [dm6]	C	A	4.853e^-4	0.96	DOWNSTREAM Osi24 INTERGENIC
3L	3574129	3L_3574129_SNP [dm3] 3L_3574129_SNP [dm6]	C	T	4.865e^-4	0.96	INTRON Eip63E
2L	1659475	2L_1659475_SNP [dm3] 2L_1659475_SNP [dm6]	C	T	4.867e^-4	0.96	INTRON chinmo
X	3967532	X_3967532_SNP [dm3] X_4073499_SNP [dm6]	T	C	4.869e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10344406	3L_10344406_SNP [dm3] 3L_10351306_SNP [dm6]	T	C	4.873e^-4	0.96	INTRON CR44327
2L	13985907	2L_13985907_SNP [dm3] 2L_13985907_SNP [dm6]	C	G	4.881e^-4	0.96	NON_SYNONYMOUS_CODING rk
2R	13242799	2R_13242799_SNP [dm3] 2R_17355294_SNP [dm6]	T	G	4.885e^-4	0.96	INTRON mbl
3L	6316414	3L_6316414_SNP [dm3] 3L_6323314_SNP [dm6]	A	G	4.886e^-4	0.96	INTERGENIC
2L	21310145	2L_21310145_SNP [dm3] 2L_21310145_SNP [dm6]	A	T	4.891e^-4	0.96	UPSTREAM Mio & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	21774602	3L_21774602_SNP [dm3] 3L_21781502_SNP [dm6]	G	A	4.907e^-4	0.96	INTERGENIC
3R	19443009	3R_19443009_SNP [dm3] 3R_23617287_SNP [dm6]	C	T	4.910e^-4	0.96	INTRON CG31145
3L	18649077	3L_18649077_SNP [dm3] 3L_18655977_SNP [dm6]	A	C	4.918e^-4	0.96	INTRON MYPT-75D
3L	14385350	3L_14385350_SNP [dm3] 3L_14392250_SNP [dm6]	C	A	4.930e^-4	0.96	INTERGENIC
2R	19564919	2R_19564919_SNP [dm3] 2R_23677396_SNP [dm6]	C	G	4.933e^-4	0.96	INTRON Pde8	TF binding site mE1_TFBS_cad
2L	10832550	2L_10832550_SNP [dm3] 2L_10832550_SNP [dm6]	A	G	4.936e^-4	0.96	INTRON Nos
2R	17119206	2R_17119206_SNP [dm3] 2R_21231701_SNP [dm6]	G	T	4.938e^-4	0.96	INTRON ASPP
2L	14176771	2L_14176771_SNP [dm3] 2L_14176771_SNP [dm6]	C	A	4.938e^-4	0.96	INTRON CG43333
3R	15196056	3R_15196056_SNP [dm3] 3R_19370334_SNP [dm6]	A	G	4.947e^-4	0.96	INTRON Ino80
X	2926636	X_2926636_SNP [dm3] X_3032603_SNP [dm6]	T	A	4.950e^-4	0.96	INTRON kirre
X	4560961	X_4560961_SNP [dm3] X_4666928_SNP [dm6]	T	A	4.956e^-4	0.96	UPSTREAM CG3009 DOWNSTREAM rap INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
3L	3553296	3L_3553296_INS [dm3] 3L_3553296_INS [dm6]	C	CGCTTCAATTTTTCGCACAC...	4.958e^-4	0.96	INTRON Eip63E
3R	7293045	3R_7293045_SNP [dm3] 3R_11467323_SNP [dm6]	G	A	4.970e^-4	0.96	UTR_3_PRIME CG17230
3L	5979567	3L_5979567_SNP [dm3] 3L_5986467_SNP [dm6]	G	T	4.971e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	738488	X_738488_SNP [dm3] X_844455_SNP [dm6]	G	A	4.973e^-4	0.96	UPSTREAM CG14635 INTRON CG43867	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	5869166	2L_5869166_SNP [dm3] 2L_5869166_SNP [dm6]	T	A	4.978e^-4	0.96	INTRON rau
X	8015645	X_8015645_SNP [dm3] X_8121612_SNP [dm6]	G	C	4.990e^-4	0.96	UTR_3_PRIME cyr UPSTREAM CG2260	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
X	566584	X_566584_SNP [dm3] X_672551_SNP [dm6]	G	C	4.991e^-4	0.96	INTERGENIC
3R	6206469	3R_6206469_SNP [dm3] 3R_10380747_SNP [dm6]	T	C	4.992e^-4	0.96	INTERGENIC
2R	18632818	2R_18632818_SNP [dm3] 2R_22745313_SNP [dm6]	T	C	4.993e^-4	0.96	INTRON CG42260	TF binding site mE1_TFBS_chinmo
3L	5825338	3L_5825338_SNP [dm3] 3L_5832238_SNP [dm6]	C	A	4.994e^-4	0.96	INTRON vn
3L	9862254	3L_9862254_SNP [dm3] 3L_9869154_SNP [dm6]	C	T	5.002e^-4	0.96	SYNONYMOUS_CODING CG8108	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1276813	2L_1276813_SNP [dm3] 2L_1276813_SNP [dm6]	T	C	5.003e^-4	0.96	INTRON robo3
3L	1714333	3L_1714333_SNP [dm3] 3L_1714333_SNP [dm6]	A	G	5.012e^-4	0.96	SYNONYMOUS_CODING CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4683407	3L_4683407_SNP [dm3] 3L_4683407_SNP [dm6]	T	A	5.013e^-4	0.96	INTRON axo
3R	15196083	3R_15196083_SNP [dm3] 3R_19370361_SNP [dm6]	T	C	5.018e^-4	0.96	INTRON Ino80
2L	3127602	2L_3127602_SNP [dm3] 2L_3127602_SNP [dm6]	G	A	5.031e^-4	0.96	SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8996901	2R_8996901_SNP [dm3] 2R_13109396_SNP [dm6]	C	A	5.034e^-4	0.96	INTERGENIC
3L	1732632	3L_1732632_SNP [dm3] 3L_1732632_SNP [dm6]	A	G	5.039e^-4	0.96	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	7508825	X_7508825_INS [dm3] X_7614792_INS [dm6]	C	CC	5.053e^-4	0.96	INTRON ct
X	5321532	X_5321532_SNP [dm3] X_5427499_SNP [dm6]	G	T	5.060e^-4	0.96	UPSTREAM CG16756 & 1 other DOWNSTREAM CG4165 INTERGENIC
3L	12114324	3L_12114324_SNP [dm3] 3L_12121224_SNP [dm6]	T	G	5.068e^-4	0.96	DOWNSTREAM yps & 1 other INTERGENIC
3L	742992	3L_742992_DEL [dm3] 3L_742992_DEL [dm6]	ATGGTTTTTGATAACTAA...	A	5.072e^-4	0.96	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	10926476	3L_10926476_DEL [dm3] 3L_10933376_DEL [dm6]	TC	T	5.073e^-4	0.96	INTERGENIC
X	4091246	X_4091246_SNP [dm3] X_4197213_SNP [dm6]	A	G	5.088e^-4	0.96	INTRON Fas2
3R	15949026	3R_15949026_SNP [dm3] 3R_20123304_SNP [dm6]	G	C	5.088e^-4	0.96	INTERGENIC
2L	5294431	2L_5294431_SNP [dm3] 2L_5294431_SNP [dm6]	C	T	5.089e^-4	0.96	INTRON vri
X	5850051	X_5850051_SNP [dm3] X_5956018_SNP [dm6]	T	A	5.094e^-4	0.96	INTRON CG6067
3L	6259059	3L_6259059_SNP [dm3] 3L_6265959_SNP [dm6]	C	T	5.100e^-4	0.96	INTERGENIC
3R	13599046	3R_13599046_SNP [dm3] 3R_17773324_SNP [dm6]	G	A	5.103e^-4	0.96	SYNONYMOUS_CODING CG43102
3R	9332808	3R_9332808_SNP [dm3] 3R_13507086_SNP [dm6]	C	A	5.103e^-4	0.96	INTERGENIC
2R	16424980	2R_16424980_SNP [dm3] 2R_20537475_SNP [dm6]	G	A	5.104e^-4	0.96	SYNONYMOUS_CODING CG13423
2R	16632503	2R_16632503_SNP [dm3] 2R_20744998_SNP [dm6]	C	T	5.106e^-4	0.96	INTRON dpr
2L	2325603	2L_2325603_SNP [dm3] 2L_2325603_SNP [dm6]	A	C	5.106e^-4	0.96	INTRON CG9967 & 1 other
X	1192858	X_1192858_SNP [dm3] X_1298825_SNP [dm6]	C	A	5.115e^-4	0.96	UPSTREAM CG32811 INTRON DAAM	TF binding site mE1_TFBS_chinmo
3L	6600485	3L_6600485_SNP [dm3] 3L_6607385_SNP [dm6]	A	G	5.116e^-4	0.96	NON_SYNONYMOUS_CODING CG8368	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	2646631	3L_2646631_SNP [dm3] 3L_2646631_SNP [dm6]	T	A	5.118e^-4	0.96	UTR_3_PRIME CG1143 DOWNSTREAM CG1143	TF binding site mE1_TFBS_cad
3R	18847967	3R_18847967_SNP [dm3] 3R_23022245_SNP [dm6]	G	A	5.120e^-4	0.96	NON_SYNONYMOUS_CODING lmd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	19931914	X_19931914_SNP [dm3] X_20037881_SNP [dm6]	A	G	5.122e^-4	0.96	INTRON Dop2R
3R	13115560	3R_13115560_SNP [dm3] 3R_17289838_SNP [dm6]	C	A	5.122e^-4	0.96	INTERGENIC
3L	2650677	3L_2650677_SNP [dm3] 3L_2650677_SNP [dm6]	G	T	5.124e^-4	0.96	SYNONYMOUS_CODING Aats-pro UTR_3_PRIME Aats-pro DOWNSTREAM CG1246
X	10157677	X_10157677_SNP [dm3] X_10263644_SNP [dm6]	T	A	5.128e^-4	0.96	UPSTREAM Hk DOWNSTREAM CG12643 INTERGENIC
2R	12545159	2R_12545159_SNP [dm3] 2R_16657654_SNP [dm6]	T	G	5.140e^-4	0.96	INTRON Picot
2R	20222098	2R_20222098_INS [dm3] 2R_24334575_INS [dm6]	T	TT	5.146e^-4	0.96	UPSTREAM slbo DOWNSTREAM CR44282 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10345222	2R_10345222_INS [dm3] 2R_14457717_INS [dm6]	T	TCTCTGGAAAACTT...	5.156e^-4	0.96	UPSTREAM Oaz INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	6559604	2R_6559604_SNP [dm3] 2R_10672099_SNP [dm6]	C	A	5.162e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_sens
X	8678952	X_8678952_SNP [dm3] X_8784919_SNP [dm6]	T	C	5.166e^-4	0.96	INTRON Lim1
2R	19905384	2R_19905384_SNP [dm3] 2R_24017861_SNP [dm6]	C	T	5.170e^-4	0.96	UPSTREAM CG4324 INTRON CG3121	TF binding site BDTNP1_TFBS_twi
3R	5128176	3R_5128176_SNP [dm3] 3R_9302454_SNP [dm6]	G	T	5.174e^-4	0.96	INTRON CG8861
2L	14827149	2L_14827149_SNP [dm3] 2L_14827149_SNP [dm6]	C	T	5.179e^-4	0.96	INTERGENIC
3R	4349280	3R_4349280_SNP [dm3] 3R_8523558_SNP [dm6]	T	C	5.180e^-4	0.96	UPSTREAM CG31259 DOWNSTREAM CG31454 INTERGENIC
3R	17861054	3R_17861054_SNP [dm3] 3R_22035332_SNP [dm6]	A	T	5.184e^-4	0.96	UTR_3_PRIME Fadd UPSTREAM pit INTRON pit	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	13822330	2R_13822330_SNP [dm3] 2R_17934825_SNP [dm6]	A	G	5.195e^-4	0.96	INTERGENIC
X	677884	X_677884_SNP [dm3] X_783851_SNP [dm6]	G	A	5.199e^-4	0.96	UTR_3_PRIME fz3 UPSTREAM tw DOWNSTREAM fz3
2R	15883911	2R_15883911_SNP [dm3] 2R_19996406_SNP [dm6]	T	C	5.199e^-4	0.96	INTERGENIC
3L	8207850	3L_8207850_SNP [dm3] 3L_8214750_SNP [dm6]	T	C	5.204e^-4	0.96	UPSTREAM CG8012 INTERGENIC
3L	18155083	3L_18155083_SNP [dm3] 3L_18161983_SNP [dm6]	C	T	5.210e^-4	0.96	INTRON CG13699
2R	9147155	2R_9147155_SNP [dm3] 2R_13259650_SNP [dm6]	A	T	5.232e^-4	0.96	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
X	676644	X_676644_SNP [dm3] X_782611_SNP [dm6]	C	T	5.247e^-4	0.96	NON_SYNONYMOUS_CODING fz3	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	18254109	X_18254109_SNP [dm3] X_18360076_SNP [dm6]	G	T	5.247e^-4	0.96	NON_SYNONYMOUS_CODING CG6106	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	1192856	X_1192856_SNP [dm3] X_1298823_SNP [dm6]	G	A	5.268e^-4	0.96	UPSTREAM CG32811 INTRON DAAM	TF binding site mE1_TFBS_chinmo

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.550e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.01675

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	10.758	0.0046

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1763 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	9131327	2R_9131327_SNP [dm3] 2R_13243822_SNP [dm6]	G	A	5.021e^-7	0.316	DOWNSTREAM CR45278 INTERGENIC
2R	9131300	2R_9131300_SNP [dm3] 2R_13243795_SNP [dm6]	A	T	8.437e^-7	0.316	DOWNSTREAM CR45278 INTERGENIC
3L	14057292	3L_14057292_SNP [dm3] 3L_14064192_SNP [dm6]	C	T	1.166e^-6	0.316	INTRON CG32138	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	9131372	2R_9131372_SNP [dm3] 2R_13243867_SNP [dm6]	T	C	1.228e^-6	0.316	DOWNSTREAM CR45278 INTERGENIC
2R	9131294	2R_9131294_SNP [dm3] 2R_13243789_SNP [dm6]	A	C	1.296e^-6	0.316	DOWNSTREAM CR45278 INTERGENIC
2R	9131453	2R_9131453_SNP [dm3] 2R_13243948_SNP [dm6]	A	C	1.452e^-6	0.316	DOWNSTREAM CR45278 INTERGENIC
2R	9131495	2R_9131495_SNP [dm3] 2R_13243990_SNP [dm6]	G	T	1.572e^-6	0.316	DOWNSTREAM CR45278 INTERGENIC
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	1.612e^-6	0.316	INTRON dnc
2R	9131320	2R_9131320_SNP [dm3] 2R_13243815_SNP [dm6]	T	G	1.617e^-6	0.316	DOWNSTREAM CR45278 INTERGENIC
2R	9131489	2R_9131489_SNP [dm3] 2R_13243984_SNP [dm6]	G	T	1.686e^-6	0.316	DOWNSTREAM CR45278 INTERGENIC
2R	9131331	2R_9131331_SNP [dm3] 2R_13243826_SNP [dm6]	A	C	2.159e^-6	0.344	DOWNSTREAM CR45278 INTERGENIC
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	2.201e^-6	0.344	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
3L	3727650	3L_3727650_SNP [dm3] 3L_3727650_SNP [dm6]	G	C	2.487e^-6	0.359	INTRON CG32264
2R	9131432	2R_9131432_SNP [dm3] 2R_13243927_SNP [dm6]	T	C	2.822e^-6	0.378	DOWNSTREAM CR45278 INTERGENIC
2L	13610291	2L_13610291_SNP [dm3] 2L_13610291_SNP [dm6]	C	T	3.034e^-6	0.379	NON_SYNONYMOUS_CODING kuz DOWNSTREAM mir-2489
2R	9136898	2R_9136898_SNP [dm3] 2R_13249393_SNP [dm6]	G	A	3.365e^-6	0.382	SPLICE_SITE_REGION CG4712 DOWNSTREAM Mp20 INTRON CG4712
2R	9131332	2R_9131332_SNP [dm3] 2R_13243827_SNP [dm6]	G	T	3.514e^-6	0.382	DOWNSTREAM CR45278 INTERGENIC
2R	9131375	2R_9131375_SNP [dm3] 2R_13243870_SNP [dm6]	G	A	3.666e^-6	0.382	DOWNSTREAM CR45278 INTERGENIC
2R	9131360	2R_9131360_SNP [dm3] 2R_13243855_SNP [dm6]	C	T	4.111e^-6	0.406	DOWNSTREAM CR45278 INTERGENIC
3L	3090995	3L_3090995_SNP [dm3] 3L_3090995_SNP [dm6]	C	T	5.223e^-6	0.49	UTR_3_PRIME Cht7 DOWNSTREAM CG11486 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	10923261	3L_10923261_SNP [dm3] 3L_10930161_SNP [dm6]	C	T	5.976e^-6	0.527	INTERGENIC
2R	13772991	2R_13772991_SNP [dm3] 2R_17885486_SNP [dm6]	C	T	6.186e^-6	0.527	INTRON Elk
X	12718574	X_12718574_SNP [dm3] X_12824541_SNP [dm6]	G	C	7.460e^-6	0.608	INTRON Pde9
2R	9131363	2R_9131363_SNP [dm3] 2R_13243858_SNP [dm6]	T	C	8.553e^-6	0.663	DOWNSTREAM CR45278 INTERGENIC
2R	9131354	2R_9131354_SNP [dm3] 2R_13243849_SNP [dm6]	G	A	9.120e^-6	0.663	DOWNSTREAM CR45278 INTERGENIC
2R	19024800	2R_19024800_SNP [dm3] 2R_23137277_SNP [dm6]	G	A	9.195e^-6	0.663	INTERGENIC
X	2926734	X_2926734_SNP [dm3] X_3032701_SNP [dm6]	C	A	9.868e^-6	0.685	INTRON kirre
3R	10614051	3R_10614051_SNP [dm3] 3R_14788329_SNP [dm6]	G	A	1.152e^-5	0.746	SYNONYMOUS_CODING jvl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14385350	3L_14385350_SNP [dm3] 3L_14392250_SNP [dm6]	C	A	1.154e^-5	0.746	INTERGENIC
2R	9138301	2R_9138301_SNP [dm3] 2R_13250796_SNP [dm6]	A	T	1.234e^-5	0.748	NON_SYNONYMOUS_CODING CG4712
3L	2643078	3L_2643078_SNP [dm3] 3L_2643078_SNP [dm6]	A	T	1.300e^-5	0.748	INTRON CG14949
3R	13600672	3R_13600672_SNP [dm3] 3R_17774950_SNP [dm6]	C	T	1.356e^-5	0.748	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14383684	3L_14383684_SNP [dm3] 3L_14390584_SNP [dm6]	T	C	1.369e^-5	0.748	INTERGENIC
2R	9131365	2R_9131365_SNP [dm3] 2R_13243860_SNP [dm6]	T	G	1.455e^-5	0.748	DOWNSTREAM CR45278 INTERGENIC
X	9794806	X_9794806_SNP [dm3] X_9900773_SNP [dm6]	A	T	1.460e^-5	0.748	INTERGENIC
2R	17485600	2R_17485600_SNP [dm3] 2R_21598095_SNP [dm6]	T	C	1.475e^-5	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14383954	3L_14383954_SNP [dm3] 3L_14390854_SNP [dm6]	T	A	1.476e^-5	0.748	INTERGENIC
X	935094	X_935094_SNP [dm3] X_1041061_SNP [dm6]	G	A	1.633e^-5	0.806	UTR_5_PRIME su_w[a]_ INTRON su_w[a]_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_ttk
3R	6249035	3R_6249035_INS [dm3] 3R_10423313_INS [dm6]	T	TT	1.682e^-5	0.809	INTERGENIC
3L	14385798	3L_14385798_INS [dm3] 3L_14392698_INS [dm6]	G	GC	1.737e^-5	0.814	INTERGENIC
3L	11236601	3L_11236601_SNP [dm3] 3L_11243501_SNP [dm6]	G	A	1.922e^-5	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	20323712	2R_20323712_SNP [dm3] 2R_24436189_SNP [dm6]	C	T	1.971e^-5	0.88	INTERGENIC
2R	9131358	2R_9131358_SNP [dm3] 2R_13243853_SNP [dm6]	T	A	2.126e^-5	0.897	DOWNSTREAM CR45278 INTERGENIC
3L	14385310	3L_14385310_INS [dm3] 3L_14392210_INS [dm6]	T	TGCTCTTAA	2.245e^-5	0.897	INTERGENIC
2R	16289150	2R_16289150_SNP [dm3] 2R_20401645_SNP [dm6]	G	A	2.285e^-5	0.897	INTERGENIC
X	2926747	X_2926747_SNP [dm3] X_3032714_SNP [dm6]	G	A	2.427e^-5	0.897	INTRON kirre
2R	19397731	2R_19397731_SNP [dm3] 2R_23510208_SNP [dm6]	G	A	2.444e^-5	0.897	INTERGENIC
2R	14932148	2R_14932148_DEL [dm3] 2R_19044643_DEL [dm6]	AA	A	2.553e^-5	0.897	INTERGENIC
3R	21388450	3R_21388450_SNP [dm3] 3R_25562728_SNP [dm6]	C	T	2.604e^-5	0.897	INTRON msi
3L	14385307	3L_14385307_SNP [dm3] 3L_14392207_SNP [dm6]	A	G	2.635e^-5	0.897	INTERGENIC
2R	15733645	2R_15733645_SNP [dm3] 2R_19846140_SNP [dm6]	C	G	2.635e^-5	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	2643105	3L_2643105_DEL [dm3] 3L_2643105_DEL [dm6]	TAATAT	T	2.679e^-5	0.897	INTRON CG14949
3R	18478663	3R_18478663_SNP [dm3] 3R_22652941_SNP [dm6]	T	A	2.710e^-5	0.897	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19024797	2R_19024797_SNP [dm3] 2R_23137274_SNP [dm6]	C	T	2.731e^-5	0.897	INTERGENIC
3R	20851748	3R_20851748_SNP [dm3] 3R_25026026_SNP [dm6]	G	A	2.825e^-5	0.897	SYNONYMOUS_CODING Hr96	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	2.877e^-5	0.897	EXON CR44950
2R	15874982	2R_15874982_SNP [dm3] 2R_19987477_SNP [dm6]	C	T	2.925e^-5	0.897	INTERGENIC
3L	7378396	3L_7378396_SNP [dm3] 3L_7385296_SNP [dm6]	G	A	2.950e^-5	0.897	DOWNSTREAM CG8564 INTRON smid
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	2.967e^-5	0.897	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8338654	2R_8338654_SNP [dm3] 2R_12451149_SNP [dm6]	C	A	2.971e^-5	0.897	SYNONYMOUS_CODING Dyb INTRON Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	5281524	X_5281524_SNP [dm3] X_5387491_SNP [dm6]	T	C	2.981e^-5	0.897	INTRON SK
3L	7373521	3L_7373521_SNP [dm3] 3L_7380421_SNP [dm6]	A	C	2.988e^-5	0.897	INTRON SMSr
3R	6206032	3R_6206032_SNP [dm3] 3R_10380310_SNP [dm6]	G	A	3.015e^-5	0.897	INTERGENIC
2R	12177756	2R_12177756_SNP [dm3] 2R_16290251_SNP [dm6]	G	A	3.139e^-5	0.919	SYNONYMOUS_CODING JhI-26 EXON CR43730
2R	8360568	2R_8360568_SNP [dm3] 2R_12473063_SNP [dm6]	A	G	3.221e^-5	0.925	SYNONYMOUS_CODING CG8550
3L	14385354	3L_14385354_SNP [dm3] 3L_14392254_SNP [dm6]	G	A	3.257e^-5	0.925	INTERGENIC
3R	5709131	3R_5709131_SNP [dm3] 3R_9883409_SNP [dm6]	C	G	3.362e^-5	0.927	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11649612	3L_11649612_SNP [dm3] 3L_11656512_SNP [dm6]	C	T	3.469e^-5	0.927	UPSTREAM mir-274 INTRON CG32085
X	9794836	X_9794836_DEL [dm3] X_9900803_DEL [dm6]	AA	A	3.476e^-5	0.927	INTERGENIC
3L	7375633	3L_7375633_SNP [dm3] 3L_7382533_SNP [dm6]	C	T	3.485e^-5	0.927	SYNONYMOUS_CODING smid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	10998554	2R_10998554_INS [dm3] 2R_15111049_INS [dm6]	A	ACCATAAGAACCACTAATGG...	3.511e^-5	0.927	INTERGENIC
3L	14384514	3L_14384514_SNP [dm3] 3L_14391414_SNP [dm6]	C	T	3.607e^-5	0.939	INTERGENIC
2R	19408576	2R_19408576_SNP [dm3] 2R_23521053_SNP [dm6]	C	T	3.664e^-5	0.941	INTRON RabX1
3L	7370439	3L_7370439_SNP [dm3] 3L_7377339_SNP [dm6]	A	T	3.780e^-5	0.958	INTRON SMSr
3L	13549446	3L_13549446_SNP [dm3] 3L_13556346_SNP [dm6]	C	G	3.947e^-5	0.987	INTRON bru-3
2L	15090507	2L_15090507_SNP [dm3] 2L_15090507_SNP [dm6]	T	C	4.011e^-5	0.987	INTRON CG15270
2L	4205206	2L_4205206_SNP [dm3] 2L_4205206_SNP [dm6]	T	C	4.074e^-5	0.987	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	3379452	X_3379452_SNP [dm3] X_3485419_SNP [dm6]	A	G	4.158e^-5	0.987	UPSTREAM CG10803 & 1 other DOWNSTREAM CG10802 INTRON CR44999	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	14706075	2R_14706075_SNP [dm3] 2R_18818570_SNP [dm6]	C	A	4.158e^-5	0.987	UPSTREAM Phb2 INTERGENIC
2R	18296090	2R_18296090_SNP [dm3] 2R_22408585_SNP [dm6]	G	A	4.232e^-5	0.991	UTR_5_PRIME ventrally-expressed-protein-D UPSTREAM ventrally-expressed-protein-D DOWNSTREAM qkr58E-3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2643063	3L_2643063_SNP [dm3] 3L_2643063_SNP [dm6]	A	G	4.325e^-5	0.991	INTRON CG14949
X	20259404	X_20259404_SNP [dm3] X_20388377_SNP [dm6]	T	C	4.611e^-5	0.991	INTERGENIC
3L	6983382	3L_6983382_DEL [dm3] 3L_6990282_DEL [dm6]	TT	T	4.709e^-5	0.991	UPSTREAM bin INTERGENIC	TF binding site mE1_TFBS_Trl
3L	11236588	3L_11236588_SNP [dm3] 3L_11243488_SNP [dm6]	C	T	4.718e^-5	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	2926031	X_2926031_SNP [dm3] X_3031998_SNP [dm6]	C	A	4.811e^-5	0.991	INTRON kirre
2R	11481430	2R_11481430_SNP [dm3] 2R_15593925_SNP [dm6]	T	C	4.834e^-5	0.991	INTERGENIC
2R	13855133	2R_13855133_SNP [dm3] 2R_17967628_SNP [dm6]	C	T	4.920e^-5	0.991	INTERGENIC
X	4091094	X_4091094_DEL [dm3] X_4197061_DEL [dm6]	AAA	A	5.023e^-5	0.991	INTRON Fas2
3L	14385314	3L_14385314_DEL [dm3] 3L_14392214_DEL [dm6]	ATAAAAA	A	5.096e^-5	0.991	INTERGENIC
X	14139459	X_14139459_SNP [dm3] X_14245426_SNP [dm6]	A	T	5.152e^-5	0.991	INTRON CG32599
3R	18479994	3R_18479994_SNP [dm3] 3R_22654272_SNP [dm6]	C	T	5.242e^-5	0.991	INTRON CG45058
X	18122204	X_18122204_SNP [dm3] X_18228171_SNP [dm6]	T	G	5.325e^-5	0.991	EXON CR45622
2L	4836296	2L_4836296_SNP [dm3] 2L_4836296_SNP [dm6]	A	T	5.439e^-5	0.991	UPSTREAM Ir25a INTRON tank
3L	6055459	3L_6055459_SNP [dm3] 3L_6062359_SNP [dm6]	G	T	5.528e^-5	0.991	SYNONYMOUS_CODING CG10472 DOWNSTREAM CG6592	TF binding site mE1_TFBS_cad
3R	6249047	3R_6249047_SNP [dm3] 3R_10423325_SNP [dm6]	G	A	5.557e^-5	0.991	INTERGENIC
2L	7057433	2L_7057433_SNP [dm3] 2L_7057433_SNP [dm6]	C	T	5.582e^-5	0.991	SYNONYMOUS_CODING Mnn1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18454746	X_18454746_INS [dm3] X_18560713_INS [dm6]	A	ACGATGAACA	5.586e^-5	0.991	INTRON Bx
3R	7267022	3R_7267022_SNP [dm3] 3R_11441300_SNP [dm6]	A	G	5.592e^-5	0.991	DOWNSTREAM mir-4945 INTRON CG17230 & 1 other
2L	4353387	2L_4353387_SNP [dm3] 2L_4353387_SNP [dm6]	A	T	5.609e^-5	0.991	SYNONYMOUS_CODING CG15429 UTR_5_PRIME CG15429	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21063578	X_21063578_SNP [dm3] X_21192551_SNP [dm6]	G	A	5.626e^-5	0.991	UPSTREAM CG14579 INTERGENIC
3L	4729145	3L_4729145_SNP [dm3] 3L_4729145_SNP [dm6]	A	G	5.808e^-5	0.991	INTRON RhoGEF64C
2R	10998487	2R_10998487_SNP [dm3] 2R_15110982_SNP [dm6]	T	C	5.939e^-5	0.991	INTERGENIC
2R	20223679	2R_20223679_SNP [dm3] 2R_24336156_SNP [dm6]	G	A	5.989e^-5	0.991	UPSTREAM CR44282 INTERGENIC
2R	9137625	2R_9137625_SNP [dm3] 2R_13250120_SNP [dm6]	G	A	6.063e^-5	0.991	SYNONYMOUS_CODING CG4712
3R	25921645	3R_25921645_SNP [dm3] 3R_30095923_SNP [dm6]	C	T	6.467e^-5	0.991	INTRON sima
3L	12847020	3L_12847020_SNP [dm3] 3L_12853920_SNP [dm6]	C	T	6.485e^-5	0.991	UTR_5_PRIME Ent3 DOWNSTREAM Wbp2
2R	8996901	2R_8996901_SNP [dm3] 2R_13109396_SNP [dm6]	C	A	6.738e^-5	0.991	INTERGENIC
2R	9136867	2R_9136867_SNP [dm3] 2R_13249362_SNP [dm6]	A	C	6.773e^-5	0.991	DOWNSTREAM Mp20 INTRON CG4712
3R	21388451	3R_21388451_SNP [dm3] 3R_25562729_SNP [dm6]	T	G	6.802e^-5	0.991	INTRON msi
3L	12033758	3L_12033758_SNP [dm3] 3L_12040658_SNP [dm6]	G	T	6.809e^-5	0.991	INTRON rols
3L	2645586	3L_2645586_SNP [dm3] 3L_2645586_SNP [dm6]	T	G	6.838e^-5	0.991	INTRON CG1143	TF binding site mE1_TFBS_cad
3L	6092209	3L_6092209_SNP [dm3] 3L_6099109_SNP [dm6]	T	C	7.147e^-5	0.991	INTRON Ets65A
3L	7374489	3L_7374489_SNP [dm3] 3L_7381389_SNP [dm6]	A	T	7.219e^-5	0.991	UTR_5_PRIME SMSr UPSTREAM smid	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	15200598	3R_15200598_SNP [dm3] 3R_19374876_SNP [dm6]	A	T	7.255e^-5	0.991	UPSTREAM CG3581 DOWNSTREAM CG31404 INTRON Ino80
3L	12900440	3L_12900440_SNP [dm3] 3L_12907340_SNP [dm6]	A	G	7.341e^-5	0.991	INTERGENIC
3R	13600203	3R_13600203_SNP [dm3] 3R_17774481_SNP [dm6]	C	T	7.454e^-5	0.991	UTR_5_PRIME CG43102 INTRON CG43102
3R	13600449	3R_13600449_SNP [dm3] 3R_17774727_SNP [dm6]	C	T	7.454e^-5	0.991	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl
3L	4729190	3L_4729190_SNP [dm3] 3L_4729190_SNP [dm6]	C	A	7.592e^-5	0.991	INTRON RhoGEF64C
3L	8548292	3L_8548292_SNP [dm3] 3L_8555192_SNP [dm6]	A	G	7.680e^-5	0.991	INTRON rhea	TF binding site BDTNP1_TFBS_twi
2R	9128514	2R_9128514_SNP [dm3] 2R_13241009_SNP [dm6]	G	T	7.713e^-5	0.991	UTR_3_PRIME GstE14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7369219	3L_7369219_SNP [dm3] 3L_7376119_SNP [dm6]	G	C	7.760e^-5	0.991	INTRON SMSr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	9789512	3L_9789512_SNP [dm3] 3L_9796412_SNP [dm6]	T	G	7.804e^-5	0.991	INTRON Zasp67
3L	2403973	3L_2403973_SNP [dm3] 3L_2403973_SNP [dm6]	G	A	7.830e^-5	0.991	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2649575	3L_2649575_SNP [dm3] 3L_2649575_SNP [dm6]	A	G	7.948e^-5	0.991	NON_SYNONYMOUS_CODING CG1246 DOWNSTREAM Aats-pro
2R	7293573	2R_7293573_SNP [dm3] 2R_11406068_SNP [dm6]	T	A	8.044e^-5	0.991	SPLICE_SITE_REGION CG7759 UPSTREAM tRNA:CR45107 INTRON CG7759
2R	10571474	2R_10571474_SNP [dm3] 2R_14683969_SNP [dm6]	G	T	8.134e^-5	0.991	INTRON mspo
3L	10923391	3L_10923391_SNP [dm3] 3L_10930291_SNP [dm6]	C	A	8.228e^-5	0.991	INTERGENIC
3R	23033710	3R_23033710_INS [dm3] 3R_27207988_INS [dm6]	C	CTGCCGCTGCCGCTGC...	8.256e^-5	0.991	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3R	13600041	3R_13600041_SNP [dm3] 3R_17774319_SNP [dm6]	C	T	8.297e^-5	0.991	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
2R	10998617	2R_10998617_SNP [dm3] 2R_15111112_SNP [dm6]	C	T	8.306e^-5	0.991	INTERGENIC
3L	2649565	3L_2649565_SNP [dm3] 3L_2649565_SNP [dm6]	A	G	8.347e^-5	0.991	SYNONYMOUS_CODING CG1246 DOWNSTREAM Aats-pro
3R	23900096	3R_23900096_SNP [dm3] 3R_28074374_SNP [dm6]	T	G	8.380e^-5	0.991	INTRON CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7369763	3L_7369763_SNP [dm3] 3L_7376663_SNP [dm6]	C	T	8.383e^-5	0.991	INTRON SMSr
X	4091100	X_4091100_SNP [dm3] X_4197067_SNP [dm6]	G	C	8.431e^-5	0.991	INTRON Fas2
3R	13600157	3R_13600157_SNP [dm3] 3R_17774435_SNP [dm6]	T	G	8.454e^-5	0.991	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3L	8547757	3L_8547757_SNP [dm3] 3L_8554657_SNP [dm6]	A	T	8.478e^-5	0.991	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19239433	X_19239433_SNP [dm3] X_19345400_SNP [dm6]	T	A	8.519e^-5	0.991	INTRON nAChRalpha7
2L	13863555	2L_13863555_SNP [dm3] 2L_13863555_SNP [dm6]	G	C	8.593e^-5	0.991	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
X	13095605	X_13095605_INS [dm3] X_13201572_INS [dm6]	G	GAAAATGGGAG...	8.624e^-5	0.991	FRAME_SHIFT CG44437 INTRON sno	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	13099415	3R_13099415_SNP [dm3] 3R_17273693_SNP [dm6]	T	C	8.676e^-5	0.991	INTERGENIC
3R	8566748	3R_8566748_SNP [dm3] 3R_12741026_SNP [dm6]	C	A	8.731e^-5	0.991	SYNONYMOUS_CODING CG5724 DOWNSTREAM CG5999
2L	2915230	2L_2915230_SNP [dm3] 2L_2915230_SNP [dm6]	G	C	9.117e^-5	0.991	INTRON lilli
2R	12177780	2R_12177780_SNP [dm3] 2R_16290275_SNP [dm6]	C	T	9.118e^-5	0.991	SYNONYMOUS_CODING JhI-26 EXON CR43730
3L	12900321	3L_12900321_SNP [dm3] 3L_12907221_SNP [dm6]	T	C	9.206e^-5	0.991	INTERGENIC
2L	12923423	2L_12923423_SNP [dm3] 2L_12923423_SNP [dm6]	T	G	9.267e^-5	0.991	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
2L	15095089	2L_15095089_SNP [dm3] 2L_15095089_SNP [dm6]	C	T	9.375e^-5	0.991	SYNONYMOUS_CODING CG15270
3L	1294411	3L_1294411_SNP [dm3] 3L_1294411_SNP [dm6]	T	A	9.590e^-5	0.991	UTR_3_PRIME CG32333 DOWNSTREAM CG32333
X	12718677	X_12718677_SNP [dm3] X_12824644_SNP [dm6]	G	C	9.628e^-5	0.991	INTRON Pde9
3R	24827783	3R_24827783_SNP [dm3] 3R_29002061_SNP [dm6]	T	A	9.655e^-5	0.991	INTRON wat	TF binding site BDTNP1_TFBS_twi
2R	11632839	2R_11632839_SNP [dm3] 2R_15745334_SNP [dm6]	G	A	9.731e^-5	0.991	INTRON CG30089	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11728415	3L_11728415_SNP [dm3] 3L_11735315_SNP [dm6]	C	T	9.732e^-5	0.991	UTR_3_PRIME CG6024 DOWNSTREAM CG6024
2R	12821148	2R_12821148_SNP [dm3] 2R_16933643_SNP [dm6]	C	T	9.867e^-5	0.991	INTRON Pkc53E	TF binding site BDTNP1_TFBS_twi
2R	4527854	2R_4527854_SNP [dm3] 2R_8640349_SNP [dm6]	T	A	9.874e^-5	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_inv
3L	2683655	3L_2683655_SNP [dm3] 3L_2683655_SNP [dm6]	A	G	9.877e^-5	0.991	INTRON Fife
2R	19297196	2R_19297196_SNP [dm3] 2R_23409673_SNP [dm6]	C	G	9.886e^-5	0.991	INTERGENIC
3L	1719460	3L_1719460_SNP [dm3] 3L_1719460_SNP [dm6]	C	T	9.939e^-5	0.991	SYNONYMOUS_CODING drpr INTRON drpr	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15899650	2R_15899650_SNP [dm3] 2R_20012145_SNP [dm6]	A	G	9.979e^-5	0.991	INTERGENIC
2L	2735393	2L_2735393_SNP [dm3] 2L_2735393_SNP [dm6]	C	A	1.001e^-4	0.991	UPSTREAM CG31689 INTRON CG31689
2L	12148371	2L_12148371_SNP [dm3] 2L_12148371_SNP [dm6]	T	A	1.001e^-4	0.991	INTRON CG31760
2R	13950559	2R_13950559_SNP [dm3] 2R_18063054_SNP [dm6]	A	T	1.009e^-4	0.991	INTRON CG34386
3R	4097550	3R_4097550_INS [dm3] 3R_8271828_INS [dm6]	G	GATCATGAAACTG...	1.010e^-4	0.991	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3R	18479973	3R_18479973_SNP [dm3] 3R_22654251_SNP [dm6]	C	T	1.012e^-4	0.991	INTRON CG45058
X	14182626	X_14182626_SNP [dm3] X_14288593_SNP [dm6]	G	A	1.013e^-4	0.991	DOWNSTREAM Muc12Ea INTRON CG9400
X	5039294	X_5039294_SNP [dm3] X_5145261_SNP [dm6]	C	G	1.024e^-4	0.991	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl
2L	1974874	2L_1974874_SNP [dm3] 2L_1974874_SNP [dm6]	G	C	1.032e^-4	0.991	SPLICE_SITE_REGION Der-1 DOWNSTREAM CG15356 INTRON Der-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15090517	2L_15090517_SNP [dm3] 2L_15090517_SNP [dm6]	A	G	1.033e^-4	0.991	INTRON CG15270
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	1.033e^-4	0.991	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1383805	2L_1383805_SNP [dm3] 2L_1383805_SNP [dm6]	G	C	1.042e^-4	0.991	INTRON lea
2R	19408521	2R_19408521_SNP [dm3] 2R_23520998_SNP [dm6]	T	C	1.045e^-4	0.991	INTRON RabX1
2R	9131154	2R_9131154_DEL [dm3] 2R_13243649_DEL [dm6]	CCCGG	C	1.045e^-4	0.991	DOWNSTREAM CR45278 INTERGENIC
2R	7439745	2R_7439745_SNP [dm3] 2R_11552240_SNP [dm6]	T	C	1.046e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12544954	2R_12544954_SNP [dm3] 2R_16657449_SNP [dm6]	G	C	1.047e^-4	0.991	INTRON Picot
2L	14788353	2L_14788353_SNP [dm3] 2L_14788353_SNP [dm6]	C	A	1.055e^-4	0.991	INTERGENIC
3L	2649550	3L_2649550_SNP [dm3] 3L_2649550_SNP [dm6]	G	T	1.055e^-4	0.991	SYNONYMOUS_CODING CG1246 DOWNSTREAM Aats-pro
2R	20223672	2R_20223672_SNP [dm3] 2R_24336149_SNP [dm6]	C	G	1.056e^-4	0.991	UPSTREAM CR44282 INTERGENIC
3L	2170090	3L_2170090_SNP [dm3] 3L_2170090_SNP [dm6]	A	G	1.059e^-4	0.991	SYNONYMOUS_CODING CG5704 UPSTREAM CG15879
3R	14797319	3R_14797319_SNP [dm3] 3R_18971597_SNP [dm6]	T	C	1.066e^-4	0.991	INTRON CG42613 & 1 other
3R	14797007	3R_14797007_SNP [dm3] 3R_18971285_SNP [dm6]	C	T	1.075e^-4	0.991	SPLICE_SITE_REGION CG42613 & 1 other INTRON CG42613 & 1 other
X	5111408	X_5111408_SNP [dm3] X_5217375_SNP [dm6]	T	C	1.087e^-4	0.991	INTRON CG15465 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	16957164	2R_16957164_SNP [dm3] 2R_21069659_SNP [dm6]	A	T	1.088e^-4	0.991	UPSTREAM Cht9 DOWNSTREAM CG10527 & 1 other INTERGENIC
X	14170487	X_14170487_SNP [dm3] X_14276454_SNP [dm6]	C	T	1.090e^-4	0.991	SYNONYMOUS_CODING na	TF binding site mE1_TFBS_cad
2R	12177771	2R_12177771_SNP [dm3] 2R_16290266_SNP [dm6]	A	G	1.095e^-4	0.991	SYNONYMOUS_CODING JhI-26 EXON CR43730
3L	12900340	3L_12900340_SNP [dm3] 3L_12907240_SNP [dm6]	T	C	1.101e^-4	0.991	INTERGENIC
2L	1378411	2L_1378411_SNP [dm3] 2L_1378411_SNP [dm6]	A	T	1.105e^-4	0.991	INTERGENIC
2R	6827617	2R_6827617_DEL [dm3] 2R_10940112_DEL [dm6]	TCA	T	1.107e^-4	0.991	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
3R	14376709	3R_14376709_SNP [dm3] 3R_18550987_SNP [dm6]	T	A	1.107e^-4	0.991	INTERGENIC
2L	841883	2L_841883_SNP [dm3] 2L_841883_SNP [dm6]	C	G	1.108e^-4	0.991	INTRON drongo
2R	6827616	2R_6827616_SNP [dm3] 2R_10940111_SNP [dm6]	T	C	1.118e^-4	0.991	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
3L	9716375	3L_9716375_SNP [dm3] 3L_9723275_SNP [dm6]	G	T	1.119e^-4	0.991	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	20223669	2R_20223669_SNP [dm3] 2R_24336146_SNP [dm6]	A	G	1.119e^-4	0.991	UPSTREAM CR44282 INTERGENIC
2R	15945513	2R_15945513_SNP [dm3] 2R_20058008_SNP [dm6]	C	T	1.119e^-4	0.991	UPSTREAM CR44631 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
X	14170726	X_14170726_SNP [dm3] X_14276693_SNP [dm6]	G	A	1.131e^-4	0.991	UTR_3_PRIME na	TF binding site mE1_TFBS_cad
2R	17485575	2R_17485575_SNP [dm3] 2R_21598070_SNP [dm6]	C	G	1.133e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21388618	3R_21388618_SNP [dm3] 3R_25562896_SNP [dm6]	G	A	1.143e^-4	0.991	INTRON msi
3L	11236602	3L_11236602_SNP [dm3] 3L_11243502_SNP [dm6]	A	C	1.150e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	14171350	X_14171350_SNP [dm3] X_14277317_SNP [dm6]	A	G	1.154e^-4	0.991	UTR_3_PRIME na UPSTREAM Muc12Ea DOWNSTREAM na
2L	12488573	2L_12488573_INS [dm3] 2L_12488573_INS [dm6]	C	CAAC	1.158e^-4	0.991	INTRON bun	TF binding site BDTNP1_TFBS_twi
2R	7439749	2R_7439749_SNP [dm3] 2R_11552244_SNP [dm6]	T	C	1.160e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13139061	3R_13139061_SNP [dm3] 3R_17313339_SNP [dm6]	G	T	1.162e^-4	0.991	INTERGENIC
2R	15945512	2R_15945512_SNP [dm3] 2R_20058007_SNP [dm6]	G	T	1.163e^-4	0.991	UPSTREAM CR44631 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
3R	5121979	3R_5121979_SNP [dm3] 3R_9296257_SNP [dm6]	T	G	1.170e^-4	0.991	INTRON CG8861
2R	12456090	2R_12456090_SNP [dm3] 2R_16568585_SNP [dm6]	G	A	1.173e^-4	0.991	SYNONYMOUS_CODING CG4945	TF binding site mE1_TFBS_cad
3L	14385441	3L_14385441_SNP [dm3] 3L_14392341_SNP [dm6]	A	G	1.177e^-4	0.991	INTERGENIC
X	20262267	X_20262267_SNP [dm3] X_20391240_SNP [dm6]	A	G	1.195e^-4	0.991	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7047126	2L_7047126_SNP [dm3] 2L_7047126_SNP [dm6]	A	C	1.204e^-4	0.991	SYNONYMOUS_CODING milt INTRON milt
3L	12899010	3L_12899010_SNP [dm3] 3L_12905910_SNP [dm6]	T	A	1.213e^-4	0.991	INTERGENIC
3R	21730728	3R_21730728_SNP [dm3] 3R_25905006_SNP [dm6]	A	C	1.215e^-4	0.991	DOWNSTREAM CG31089 & 1 other INTRON CR43259
2R	7439729	2R_7439729_SNP [dm3] 2R_11552224_SNP [dm6]	G	C	1.229e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19272731	2L_19272731_SNP [dm3] 2L_19272731_SNP [dm6]	A	C	1.236e^-4	0.991	INTRON CR44190
3R	7065522	3R_7065522_INS [dm3] 3R_11239800_INS [dm6]	T	TAT	1.236e^-4	0.991	DOWNSTREAM scpr-B INTRON CG31388	TF binding site BDTNP1_TFBS_twi
3R	7065524	3R_7065524_MNP [dm3] 3R_11239802_MNP [dm6]	AATAT	CTGCA	1.236e^-4	0.991	DOWNSTREAM scpr-B INTRON CG31388	TF binding site BDTNP1_TFBS_twi
3L	7378389	3L_7378389_SNP [dm3] 3L_7385289_SNP [dm6]	G	A	1.237e^-4	0.991	DOWNSTREAM CG8564 INTRON smid
2R	20355730	2R_20355730_SNP [dm3] 2R_24468207_SNP [dm6]	C	T	1.239e^-4	0.991	INTRON CG13579
2L	2008323	2L_2008323_SNP [dm3] 2L_2008323_SNP [dm6]	T	A	1.239e^-4	0.991	UPSTREAM Nplp4 & 1 other DOWNSTREAM CR45712 INTERGENIC	TF binding site mE1_TFBS_cad
2L	2092262	2L_2092262_SNP [dm3] 2L_2092262_SNP [dm6]	T	A	1.241e^-4	0.991	INTRON dpr3
X	5115825	X_5115825_SNP [dm3] X_5221792_SNP [dm6]	A	G	1.243e^-4	0.991	INTRON CG15465 & 1 other
2R	11632827	2R_11632827_SNP [dm3] 2R_15745322_SNP [dm6]	A	T	1.247e^-4	0.991	INTRON CG30089	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15945542	2R_15945542_SNP [dm3] 2R_20058037_SNP [dm6]	A	G	1.247e^-4	0.991	UPSTREAM CR44631 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
3L	13964640	3L_13964640_SNP [dm3] 3L_13971540_SNP [dm6]	T	C	1.262e^-4	0.991	SYNONYMOUS_CODING ssp2 UTR_3_PRIME Nxf3
3R	7116801	3R_7116801_SNP [dm3] 3R_11291079_SNP [dm6]	A	G	1.265e^-4	0.991	INTRON CR31386
3R	5963561	3R_5963561_SNP [dm3] 3R_10137839_SNP [dm6]	T	C	1.267e^-4	0.991	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	12849434	3L_12849434_SNP [dm3] 3L_12856334_SNP [dm6]	T	C	1.272e^-4	0.991	SYNONYMOUS_CODING Ent3 DOWNSTREAM CG32107	TF binding site mE1_TFBS_cad
3L	7383088	3L_7383088_INS [dm3] 3L_7389988_INS [dm6]	G	GGCGGTG	1.273e^-4	0.991	UPSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_inv
X	13041242	X_13041242_SNP [dm3] X_13147209_SNP [dm6]	A	G	1.275e^-4	0.991	INTRON CG32645
2R	7439752	2R_7439752_DEL [dm3] 2R_11552247_DEL [dm6]	GTATG	G	1.275e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9586157	2R_9586157_SNP [dm3] 2R_13698652_SNP [dm6]	A	T	1.279e^-4	0.991	INTRON fas
2R	6508615	2R_6508615_SNP [dm3] 2R_10621110_SNP [dm6]	A	G	1.282e^-4	0.991	INTRON CG11883
2R	10998493	2R_10998493_SNP [dm3] 2R_15110988_SNP [dm6]	A	G	1.290e^-4	0.991	INTERGENIC
X	19572577	X_19572577_SNP [dm3] X_19678544_SNP [dm6]	G	A	1.292e^-4	0.991	SYNONYMOUS_CODING dome	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23746905	3R_23746905_SNP [dm3] 3R_27921183_SNP [dm6]	A	G	1.294e^-4	0.991	UPSTREAM CG12259 DOWNSTREAM BCAS2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	3379219	X_3379219_SNP [dm3] X_3485186_SNP [dm6]	C	T	1.302e^-4	0.991	SYNONYMOUS_CODING CG14270 UPSTREAM CG10803 DOWNSTREAM CG10802 INTRON CR44999	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	6055156	3L_6055156_SNP [dm3] 3L_6062056_SNP [dm6]	C	T	1.304e^-4	0.991	DOWNSTREAM CG6592 INTRON CG10472
2R	11251263	2R_11251263_SNP [dm3] 2R_15363758_SNP [dm6]	T	A	1.305e^-4	0.991	INTRON unc-5
X	8535994	X_8535994_INS [dm3] X_8641961_INS [dm6]	C	CGC	1.311e^-4	0.991	INTRON oc
3R	18480919	3R_18480919_SNP [dm3] 3R_22655197_SNP [dm6]	T	G	1.312e^-4	0.991	INTRON CG45058
2R	15188574	2R_15188574_DEL [dm3] 2R_19301069_DEL [dm6]	AA	A	1.314e^-4	0.991	INTRON Tab2	TF binding site mE1_TFBS_inv
2R	15874958	2R_15874958_SNP [dm3] 2R_19987453_SNP [dm6]	G	A	1.320e^-4	0.991	INTERGENIC
3L	17405028	3L_17405028_SNP [dm3] 3L_17411928_SNP [dm6]	C	T	1.339e^-4	0.991	INTRON blot
X	10413834	X_10413834_SNP [dm3] X_10519801_SNP [dm6]	A	G	1.348e^-4	0.991	INTRON spri
3L	12900322	3L_12900322_SNP [dm3] 3L_12907222_SNP [dm6]	C	T	1.349e^-4	0.991	INTERGENIC
3R	25249887	3R_25249887_SNP [dm3] 3R_29424165_SNP [dm6]	A	C	1.351e^-4	0.991	INTRON Ptp99A
2R	9586417	2R_9586417_SNP [dm3] 2R_13698912_SNP [dm6]	C	A	1.355e^-4	0.991	INTRON fas
3L	14710885	3L_14710885_DEL [dm3] 3L_14717785_DEL [dm6]	GAAAAA	T	1.365e^-4	0.991	INTRON ome
2R	11330161	2R_11330161_SNP [dm3] 2R_15442656_SNP [dm6]	G	A	1.366e^-4	0.991	INTRON CG43729
2R	15185436	2R_15185436_SNP [dm3] 2R_19297931_SNP [dm6]	G	A	1.369e^-4	0.991	UPSTREAM Tab2 INTRON Tab2	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	7375689	3L_7375689_SNP [dm3] 3L_7382589_SNP [dm6]	A	G	1.380e^-4	0.991	SYNONYMOUS_CODING smid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	12332237	2L_12332237_SNP [dm3] 2L_12332237_SNP [dm6]	T	G	1.381e^-4	0.991	INTERGENIC
2R	12026907	2R_12026907_SNP [dm3] 2R_16139402_SNP [dm6]	T	C	1.383e^-4	0.991	INTRON Got1
2R	9131207	2R_9131207_SNP [dm3] 2R_13243702_SNP [dm6]	T	A	1.387e^-4	0.991	DOWNSTREAM CR45278 INTERGENIC
2R	19550990	2R_19550990_SNP [dm3] 2R_23663467_SNP [dm6]	G	A	1.395e^-4	0.991	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9722198	3L_9722198_SNP [dm3] 3L_9729098_SNP [dm6]	G	A	1.399e^-4	0.991	UTR_3_PRIME Naa60 UPSTREAM ATPsyn-b DOWNSTREAM Naa60	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16837257	2R_16837257_SNP [dm3] 2R_20949752_SNP [dm6]	C	T	1.407e^-4	0.991	UPSTREAM CG33704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10998491	2R_10998491_SNP [dm3] 2R_15110986_SNP [dm6]	A	G	1.412e^-4	0.991	INTERGENIC
X	20218412	X_20218412_SNP [dm3] X_20347385_SNP [dm6]	T	A	1.421e^-4	0.991	INTERGENIC
2R	14031216	2R_14031216_SNP [dm3] 2R_18143711_SNP [dm6]	C	T	1.425e^-4	0.991	SYNONYMOUS_CODING pAbp DOWNSTREAM snoRNA:Psi18S-1347a & 2 others	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	2689994	X_2689994_SNP [dm3] X_2795961_SNP [dm6]	G	A	1.426e^-4	0.991	INTRON kirre & 1 other	regulatory region REDfly_CRMs
X	2690011	X_2690011_SNP [dm3] X_2795978_SNP [dm6]	G	A	1.426e^-4	0.991	INTRON kirre & 1 other	regulatory region REDfly_CRMs
X	2690031	X_2690031_SNP [dm3] X_2795998_SNP [dm6]	A	G	1.426e^-4	0.991	INTRON kirre & 1 other	regulatory region REDfly_CRMs
3L	15633361	3L_15633361_SNP [dm3] 3L_15640261_SNP [dm6]	G	A	1.428e^-4	0.991	INTRON comm3	TF binding site mE1_TFBS_inv
3L	1866893	3L_1866893_SNP [dm3] 3L_1866893_SNP [dm6]	T	G	1.430e^-4	0.991	INTRON CG12025	TF binding site BDTNP1_TFBS_twi
X	2926643	X_2926643_SNP [dm3] X_3032610_SNP [dm6]	C	T	1.431e^-4	0.991	INTRON kirre
2R	11177864	2R_11177864_SNP [dm3] 2R_15290359_SNP [dm6]	A	G	1.449e^-4	0.991	INTRON Trpm
2R	11330066	2R_11330066_SNP [dm3] 2R_15442561_SNP [dm6]	G	T	1.453e^-4	0.991	INTRON CG43729
2L	21785498	2L_21785498_SNP [dm3] 2L_21785498_SNP [dm6]	A	T	1.454e^-4	0.991	INTRON CG31612
3L	14388889	3L_14388889_SNP [dm3] 3L_14395789_SNP [dm6]	G	A	1.455e^-4	0.991	INTERGENIC
X	2926636	X_2926636_SNP [dm3] X_3032603_SNP [dm6]	T	A	1.457e^-4	0.991	INTRON kirre
3L	1722831	3L_1722831_SNP [dm3] 3L_1722831_SNP [dm6]	C	T	1.459e^-4	0.991	SYNONYMOUS_CODING CG18171 INTRON drpr
2L	21780606	2L_21780606_DEL [dm3] 2L_21780606_DEL [dm6]	CTT	C	1.460e^-4	0.991	INTRON CG31612	TF binding site BDTNP1_TFBS_twi
2L	15551964	2L_15551964_SNP [dm3] 2L_15551964_SNP [dm6]	C	A	1.461e^-4	0.991	UTR_3_PRIME CG15256 UPSTREAM kek3 DOWNSTREAM CG15256
3L	14385572	3L_14385572_SNP [dm3] 3L_14392472_SNP [dm6]	A	T	1.469e^-4	0.991	INTERGENIC
2R	6798005	2R_6798005_SNP [dm3] 2R_10910500_SNP [dm6]	C	T	1.480e^-4	0.991	DOWNSTREAM Obp47a INTERGENIC
2R	6563273	2R_6563273_INS [dm3] 2R_10675768_INS [dm6]	C	CCTT	1.482e^-4	0.991	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1754842	2L_1754842_SNP [dm3] 2L_1754842_SNP [dm6]	A	G	1.489e^-4	0.991	DOWNSTREAM Gr22f INTERGENIC
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	1.500e^-4	0.991	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14182721	X_14182721_SNP [dm3] X_14288688_SNP [dm6]	A	T	1.501e^-4	0.991	DOWNSTREAM Muc12Ea INTRON CG9400	TF binding site mE1_TFBS_HSA
2R	15899625	2R_15899625_SNP [dm3] 2R_20012120_SNP [dm6]	A	G	1.508e^-4	0.991	INTERGENIC
3L	10877280	3L_10877280_SNP [dm3] 3L_10884180_SNP [dm6]	C	G	1.511e^-4	0.991	DOWNSTREAM CG6404 & 1 other INTERGENIC
3L	3574159	3L_3574159_SNP [dm3] 3L_3574159_SNP [dm6]	T	A	1.516e^-4	0.991	INTRON Eip63E
3L	11650776	3L_11650776_SNP [dm3] 3L_11657676_SNP [dm6]	G	A	1.518e^-4	0.991	DOWNSTREAM mir-274 INTRON CG32085
3L	17405032	3L_17405032_SNP [dm3] 3L_17411932_SNP [dm6]	C	A	1.521e^-4	0.991	INTRON blot
2L	3798847	2L_3798847_SNP [dm3] 2L_3798847_SNP [dm6]	G	A	1.524e^-4	0.991	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_sens
2R	10998501	2R_10998501_SNP [dm3] 2R_15110996_SNP [dm6]	T	G	1.535e^-4	0.991	INTERGENIC
3L	12900543	3L_12900543_SNP [dm3] 3L_12907443_SNP [dm6]	C	T	1.541e^-4	0.991	INTERGENIC
3R	13821335	3R_13821335_SNP [dm3] 3R_17995613_SNP [dm6]	G	A	1.543e^-4	0.991	INTRON cpo
X	5111407	X_5111407_SNP [dm3] X_5217374_SNP [dm6]	A	G	1.545e^-4	0.991	INTRON CG15465 & 1 other	TF binding site BDTNP1_TFBS_dl
X	15135061	X_15135061_SNP [dm3] X_15241028_SNP [dm6]	G	C	1.553e^-4	0.991	INTERGENIC
3R	15200655	3R_15200655_SNP [dm3] 3R_19374933_SNP [dm6]	G	C	1.559e^-4	0.991	UPSTREAM CG3581 DOWNSTREAM CG31404 INTRON Ino80
3L	4642796	3L_4642796_SNP [dm3] 3L_4642796_SNP [dm6]	T	G	1.559e^-4	0.991	NON_SYNONYMOUS_CODING axo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17696948	2R_17696948_SNP [dm3] 2R_21809443_SNP [dm6]	C	T	1.561e^-4	0.991	INTERGENIC
X	14170491	X_14170491_SNP [dm3] X_14276458_SNP [dm6]	A	C	1.562e^-4	0.991	NON_SYNONYMOUS_CODING na	TF binding site mE1_TFBS_cad
2L	21310149	2L_21310149_SNP [dm3] 2L_21310149_SNP [dm6]	G	T	1.563e^-4	0.991	UPSTREAM Mio & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	21770308	3L_21770308_SNP [dm3] 3L_21777208_SNP [dm6]	G	A	1.564e^-4	0.991	DOWNSTREAM CG42689 INTRON CG42552	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2647819	3L_2647819_SNP [dm3] 3L_2647819_SNP [dm6]	T	G	1.567e^-4	0.991	UPSTREAM CG1246 DOWNSTREAM CG1143 INTERGENIC
2R	15270336	2R_15270336_SNP [dm3] 2R_19382831_SNP [dm6]	T	A	1.571e^-4	0.991	INTRON CG10073
3L	7777439	3L_7777439_SNP [dm3] 3L_7784339_SNP [dm6]	C	T	1.575e^-4	0.991	INTRON CG32369
2L	19641163	2L_19641163_SNP [dm3] 2L_19641163_SNP [dm6]	G	A	1.578e^-4	0.991	INTRON Lar
3L	12846891	3L_12846891_SNP [dm3] 3L_12853791_SNP [dm6]	T	C	1.603e^-4	0.991	UTR_5_PRIME Ent3 DOWNSTREAM Wbp2
2R	17054773	2R_17054773_SNP [dm3] 2R_21167268_SNP [dm6]	G	T	1.614e^-4	0.991	SYNONYMOUS_CODING CG4266 INTRON CG4266	TF binding site mE1_TFBS_sens
2R	4496065	2R_4496065_INS [dm3] 2R_8608560_INS [dm6]	A	ACGA	1.619e^-4	0.991	INTRON rgr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11650075	3L_11650075_SNP [dm3] 3L_11656975_SNP [dm6]	G	A	1.624e^-4	0.991	DOWNSTREAM mir-274 INTRON CG32085 EXON mir-274
2R	16383956	2R_16383956_INS [dm3] 2R_20496451_INS [dm6]	T	TCCACAATT	1.626e^-4	0.991	INTERGENIC
3L	3354934	3L_3354934_SNP [dm3] 3L_3354934_SNP [dm6]	C	T	1.630e^-4	0.991	INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10345055	3L_10345055_SNP [dm3] 3L_10351955_SNP [dm6]	T	C	1.630e^-4	0.991	INTRON CR44327
2L	4292732	2L_4292732_SNP [dm3] 2L_4292732_SNP [dm6]	G	T	1.632e^-4	0.991	INTRON tutl
2R	9459318	2R_9459318_SNP [dm3] 2R_13571813_SNP [dm6]	C	A	1.634e^-4	0.991	SYNONYMOUS_CODING CG42807	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2092272	2L_2092272_SNP [dm3] 2L_2092272_SNP [dm6]	T	C	1.640e^-4	0.991	INTRON dpr3
3L	21583754	3L_21583754_INS [dm3] 3L_21590654_INS [dm6]	A	AGATGTAGCAA...	1.645e^-4	0.991	INTRON TfAP-2
2R	12545025	2R_12545025_INS [dm3] 2R_16657520_INS [dm6]	T	TATTTCACTAAATCTGTAAA...	1.648e^-4	0.991	INTRON Picot
2R	14086288	2R_14086288_SNP [dm3] 2R_18198783_SNP [dm6]	A	C	1.659e^-4	0.991	INTERGENIC
3L	2647839	3L_2647839_SNP [dm3] 3L_2647839_SNP [dm6]	C	G	1.667e^-4	0.991	UPSTREAM CG1246 DOWNSTREAM CG1143 INTERGENIC
2R	11530467	2R_11530467_SNP [dm3] 2R_15642962_SNP [dm6]	T	A	1.685e^-4	0.991	INTRON CG42524
X	8014647	X_8014647_SNP [dm3] X_8120614_SNP [dm6]	G	C	1.694e^-4	0.991	NON_SYNONYMOUS_CODING CG2260 DOWNSTREAM cyr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12026831	2R_12026831_SNP [dm3] 2R_16139326_SNP [dm6]	A	C	1.698e^-4	0.991	INTRON Got1
3L	14349511	3L_14349511_SNP [dm3] 3L_14356411_SNP [dm6]	A	C	1.699e^-4	0.991	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	21542444	3L_21542444_SNP [dm3] 3L_21549344_SNP [dm6]	G	A	1.707e^-4	0.991	SYNONYMOUS_CODING Wnk	TF binding site mE1_TFBS_chinmo
2L	15083918	2L_15083918_SNP [dm3] 2L_15083918_SNP [dm6]	A	T	1.720e^-4	0.991	INTRON CG15270
2L	9796660	2L_9796660_SNP [dm3] 2L_9796660_SNP [dm6]	C	T	1.722e^-4	0.991	UTR_3_PRIME nAChRalpha6 DOWNSTREAM nAChRalpha6
3L	11869362	3L_11869362_SNP [dm3] 3L_11876262_SNP [dm6]	G	A	1.727e^-4	0.991	INTRON CG44837
2L	15529485	2L_15529485_SNP [dm3] 2L_15529485_SNP [dm6]	C	T	1.731e^-4	0.991	INTERGENIC
3R	14515011	3R_14515011_SNP [dm3] 3R_18689289_SNP [dm6]	G	A	1.732e^-4	0.991	NON_SYNONYMOUS_CODING Muc91C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3354928	3L_3354928_SNP [dm3] 3L_3354928_SNP [dm6]	G	T	1.735e^-4	0.991	INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	5280991	X_5280991_SNP [dm3] X_5386958_SNP [dm6]	C	T	1.740e^-4	0.991	INTRON SK
X	15567733	X_15567733_SNP [dm3] X_15673700_SNP [dm6]	T	C	1.743e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA
X	9970646	X_9970646_SNP [dm3] X_10076613_SNP [dm6]	A	T	1.746e^-4	0.991	DOWNSTREAM ZAP3 INTRON ZAP3
3L	2170084	3L_2170084_SNP [dm3] 3L_2170084_SNP [dm6]	A	C	1.751e^-4	0.991	SYNONYMOUS_CODING CG5704 UPSTREAM CG15879
3R	15200587	3R_15200587_SNP [dm3] 3R_19374865_SNP [dm6]	C	T	1.760e^-4	0.991	UPSTREAM CG3581 DOWNSTREAM CG31404 INTRON Ino80
3R	21730724	3R_21730724_SNP [dm3] 3R_25905002_SNP [dm6]	G	A	1.761e^-4	0.991	DOWNSTREAM CG31089 & 1 other INTRON CR43259
3R	10969892	3R_10969892_SNP [dm3] 3R_15144170_SNP [dm6]	A	G	1.761e^-4	0.991	INTRON GlyS	TF binding site mE1_TFBS_cad
3L	12941178	3L_12941178_SNP [dm3] 3L_12948078_SNP [dm6]	T	C	1.781e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	9451422	X_9451422_INS [dm3] X_9557389_INS [dm6]	G	GC	1.790e^-4	0.991	UPSTREAM CG15317 DOWNSTREAM CR42767 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	6092697	3L_6092697_SNP [dm3] 3L_6099597_SNP [dm6]	T	C	1.798e^-4	0.991	INTRON Ets65A
2R	14702200	2R_14702200_SNP [dm3] 2R_18814695_SNP [dm6]	G	T	1.807e^-4	0.991	UTR_5_PRIME CG15096 UPSTREAM CR43418
2R	16869835	2R_16869835_SNP [dm3] 2R_20982330_SNP [dm6]	C	T	1.810e^-4	0.991	SYNONYMOUS_CODING CG9313	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7303874	3L_7303874_SNP [dm3] 3L_7310774_SNP [dm6]	A	C	1.813e^-4	0.991	INTRON unc-13-4A
2R	12177921	2R_12177921_SNP [dm3] 2R_16290416_SNP [dm6]	T	G	1.814e^-4	0.991	SYNONYMOUS_CODING JhI-26 EXON CR43730	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19656518	3R_19656518_SNP [dm3] 3R_23830796_SNP [dm6]	C	A	1.817e^-4	0.991	INTRON CG34355
3L	12900398	3L_12900398_SNP [dm3] 3L_12907298_SNP [dm6]	C	T	1.829e^-4	0.991	INTERGENIC
X	9451419	X_9451419_SNP [dm3] X_9557386_SNP [dm6]	A	T	1.831e^-4	0.991	UPSTREAM CG15317 DOWNSTREAM CR42767 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	10003386	2R_10003386_SNP [dm3] 2R_14115881_SNP [dm6]	G	A	1.831e^-4	0.991	INTRON Prosap
X	20218360	X_20218360_SNP [dm3] X_20347333_SNP [dm6]	C	A	1.843e^-4	0.991	INTERGENIC
X	12798505	X_12798505_SNP [dm3] X_12904472_SNP [dm6]	C	T	1.843e^-4	0.991	SYNONYMOUS_CODING CG4404 UPSTREAM CG4407	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15529508	2L_15529508_SNP [dm3] 2L_15529508_SNP [dm6]	A	C	1.855e^-4	0.991	INTERGENIC
2R	3493904	2R_3493904_SNP [dm3] 2R_7606399_SNP [dm6]	A	G	1.855e^-4	0.991	INTRON CG1358	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17156446	2R_17156446_SNP [dm3] 2R_21268941_SNP [dm6]	G	A	1.858e^-4	0.991	INTRON Rgk3
2R	6929168	2R_6929168_SNP [dm3] 2R_11041663_SNP [dm6]	T	G	1.866e^-4	0.991	INTRON luna
3L	2645997	3L_2645997_SNP [dm3] 3L_2645997_SNP [dm6]	G	T	1.869e^-4	0.991	NON_SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9452460	X_9452460_SNP [dm3] X_9558427_SNP [dm6]	C	T	1.869e^-4	0.991	DOWNSTREAM Cubn EXON CR42767
3R	12082373	3R_12082373_SNP [dm3] 3R_16256651_SNP [dm6]	A	T	1.872e^-4	0.991	INTRON tara	TF binding site mE1_TFBS_cad mE1_TFBS_eve
3L	7375907	3L_7375907_SNP [dm3] 3L_7382807_SNP [dm6]	C	T	1.881e^-4	0.991	SYNONYMOUS_CODING smid INTRON smid	TF binding site BDTNP1_TFBS_dl
2L	3798751	2L_3798751_SNP [dm3] 2L_3798751_SNP [dm6]	T	C	1.886e^-4	0.991	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_sens
2R	9137631	2R_9137631_SNP [dm3] 2R_13250126_SNP [dm6]	A	G	1.902e^-4	0.991	SYNONYMOUS_CODING CG4712
3L	796590	3L_796590_SNP [dm3] 3L_796590_SNP [dm6]	A	G	1.914e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	2404091	3L_2404091_SNP [dm3] 3L_2404091_SNP [dm6]	C	A	1.920e^-4	0.991	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19024849	2R_19024849_SNP [dm3] 2R_23137326_SNP [dm6]	T	G	1.924e^-4	0.991	INTERGENIC
X	892036	X_892036_SNP [dm3] X_998003_SNP [dm6]	T	A	1.932e^-4	0.991	INTERGENIC
3L	2507311	3L_2507311_SNP [dm3] 3L_2507311_SNP [dm6]	A	G	1.935e^-4	0.991	UTR_3_PRIME Spn DOWNSTREAM Spn
2L	19737343	2L_19737343_SNP [dm3] 2L_19737343_SNP [dm6]	G	T	1.939e^-4	0.991	DOWNSTREAM Nf-YB INTERGENIC
2R	18631203	2R_18631203_SNP [dm3] 2R_22743698_SNP [dm6]	C	T	1.957e^-4	0.991	UTR_3_PRIME CG42260	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	13912888	2L_13912888_SNP [dm3] 2L_13912888_SNP [dm6]	G	A	1.964e^-4	0.991	DOWNSTREAM Acyp INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2326999	2L_2326999_SNP [dm3] 2L_2326999_SNP [dm6]	T	C	1.972e^-4	0.991	INTRON CG9967 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6499159	3R_6499159_SNP [dm3] 3R_10673437_SNP [dm6]	T	C	1.974e^-4	0.991	INTERGENIC
3L	12730661	3L_12730661_SNP [dm3] 3L_12737561_SNP [dm6]	T	C	1.977e^-4	0.991	SYNONYMOUS_CODING Ptp69D	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18091554	3L_18091554_SNP [dm3] 3L_18098454_SNP [dm6]	C	T	1.987e^-4	0.991	INTRON CG13698
3L	14361935	3L_14361935_SNP [dm3] 3L_14368835_SNP [dm6]	T	C	1.993e^-4	0.991	DOWNSTREAM CG13481 & 1 other INTERGENIC
2L	12415089	2L_12415089_SNP [dm3] 2L_12415089_SNP [dm6]	G	A	1.998e^-4	0.991	INTRON vir-1
2L	15090890	2L_15090890_SNP [dm3] 2L_15090890_SNP [dm6]	C	A	2.000e^-4	0.991	INTRON CG15270
2R	11632836	2R_11632836_SNP [dm3] 2R_15745331_SNP [dm6]	A	G	2.007e^-4	0.991	INTRON CG30089	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11178186	2R_11178186_SNP [dm3] 2R_15290681_SNP [dm6]	T	C	2.009e^-4	0.991	INTRON Trpm
X	10882188	X_10882188_SNP [dm3] X_10988155_SNP [dm6]	T	G	2.027e^-4	0.991	INTRON CG42339
3L	14560642	3L_14560642_SNP [dm3] 3L_14567542_SNP [dm6]	C	A	2.047e^-4	0.991	INTRON CG42758
3L	6055139	3L_6055139_SNP [dm3] 3L_6062039_SNP [dm6]	T	C	2.054e^-4	0.991	DOWNSTREAM CG6592 INTRON CG10472
3L	5729800	3L_5729800_SNP [dm3] 3L_5736700_SNP [dm6]	C	T	2.055e^-4	0.991	INTRON sif
2R	15877210	2R_15877210_SNP [dm3] 2R_19989705_SNP [dm6]	C	A	2.057e^-4	0.991	INTERGENIC
X	1191641	X_1191641_SNP [dm3] X_1297608_SNP [dm6]	C	A	2.071e^-4	0.991	DOWNSTREAM CG32811 INTRON DAAM	TF binding site mE1_TFBS_chinmo
2L	8447265	2L_8447265_SNP [dm3] 2L_8447265_SNP [dm6]	A	G	2.079e^-4	0.991	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	11724086	2R_11724086_SNP [dm3] 2R_15836581_SNP [dm6]	A	G	2.080e^-4	0.991	INTRON tun	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens mE1_TFBS_Trl
2L	15090500	2L_15090500_SNP [dm3] 2L_15090500_SNP [dm6]	T	A	2.088e^-4	0.991	INTRON CG15270
2L	716032	2L_716032_SNP [dm3] 2L_716032_SNP [dm6]	A	T	2.120e^-4	0.991	DOWNSTREAM CR44988 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	15196083	3R_15196083_SNP [dm3] 3R_19370361_SNP [dm6]	T	C	2.129e^-4	0.991	INTRON Ino80
3R	5720416	3R_5720416_SNP [dm3] 3R_9894694_SNP [dm6]	T	C	2.132e^-4	0.991	INTRON Glut4EF	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	9775436	2R_9775436_SNP [dm3] 2R_13887931_SNP [dm6]	G	A	2.133e^-4	0.991	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	2690048	X_2690048_SNP [dm3] X_2796015_SNP [dm6]	A	C	2.137e^-4	0.991	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	20102741	2L_20102741_INS [dm3] 2L_20102741_INS [dm6]	T	TT	2.138e^-4	0.991	UTR_3_PRIME Kua DOWNSTREAM CG13970
3L	12900268	3L_12900268_SNP [dm3] 3L_12907168_SNP [dm6]	A	G	2.147e^-4	0.991	INTERGENIC
2R	18649903	2R_18649903_SNP [dm3] 2R_22762398_SNP [dm6]	C	G	2.147e^-4	0.991	INTRON CG42260	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9733207	2L_9733207_SNP [dm3] 2L_9733207_SNP [dm6]	G	A	2.150e^-4	0.991	SYNONYMOUS_CODING Nckx30C
3L	15525441	3L_15525441_SNP [dm3] 3L_15532341_SNP [dm6]	T	A	2.161e^-4	0.991	UPSTREAM CG43248 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19564911	2R_19564911_SNP [dm3] 2R_23677388_SNP [dm6]	T	A	2.168e^-4	0.991	INTRON Pde8	TF binding site mE1_TFBS_cad
X	12754498	X_12754498_SNP [dm3] X_12860465_SNP [dm6]	T	A	2.168e^-4	0.991	INTRON Pde9
3L	1994365	3L_1994365_SNP [dm3] 3L_1994365_SNP [dm6]	T	C	2.172e^-4	0.991	INTERGENIC
2R	10998553	2R_10998553_SNP [dm3] 2R_15111048_SNP [dm6]	C	T	2.172e^-4	0.991	INTERGENIC
3L	9862254	3L_9862254_SNP [dm3] 3L_9869154_SNP [dm6]	C	T	2.177e^-4	0.991	SYNONYMOUS_CODING CG8108	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	21774602	3L_21774602_SNP [dm3] 3L_21781502_SNP [dm6]	G	A	2.178e^-4	0.991	INTERGENIC
2L	18328673	2L_18328673_SNP [dm3] 2L_18328673_SNP [dm6]	G	C	2.184e^-4	0.991	INTRON Fas3
3L	2403067	3L_2403067_SNP [dm3] 3L_2403067_SNP [dm6]	A	G	2.196e^-4	0.991	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16847578	X_16847578_SNP [dm3] X_16953545_SNP [dm6]	T	C	2.209e^-4	0.991	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2460817	3L_2460817_SNP [dm3] 3L_2460817_SNP [dm6]	A	G	2.210e^-4	0.991	UPSTREAM CG45186 INTRON CG45186
3R	23900194	3R_23900194_SNP [dm3] 3R_28074472_SNP [dm6]	G	A	2.211e^-4	0.991	INTRON CG34362	TF binding site mE1_TFBS_chinmo
3L	12900409	3L_12900409_SNP [dm3] 3L_12907309_SNP [dm6]	G	A	2.212e^-4	0.991	INTERGENIC
2R	12026686	2R_12026686_SNP [dm3] 2R_16139181_SNP [dm6]	T	A	2.217e^-4	0.991	DOWNSTREAM spin INTRON Got1	TF binding site BDTNP1_TFBS_dl
3R	14092878	3R_14092878_SNP [dm3] 3R_18267156_SNP [dm6]	G	A	2.217e^-4	0.991	UPSTREAM CG18599 INTERGENIC
X	8113188	X_8113188_SNP [dm3] X_8219155_SNP [dm6]	C	T	2.217e^-4	0.991	INTRON sdt	TF binding site BDTNP1_TFBS_dl
3R	15200596	3R_15200596_SNP [dm3] 3R_19374874_SNP [dm6]	T	G	2.218e^-4	0.991	UPSTREAM CG3581 DOWNSTREAM CG31404 INTRON Ino80
2L	5697545	2L_5697545_SNP [dm3] 2L_5697545_SNP [dm6]	C	T	2.219e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_ftz_f1
2R	14708864	2R_14708864_SNP [dm3] 2R_18821359_SNP [dm6]	A	G	2.220e^-4	0.991	UTR_3_PRIME Phb2 DOWNSTREAM CG15097 INTRON Phb2	TF binding site mE1_TFBS_cad
2R	15002546	2R_15002546_SNP [dm3] 2R_19115041_SNP [dm6]	T	C	2.220e^-4	0.991	INTRON 5-HT1A
3L	7369953	3L_7369953_SNP [dm3] 3L_7376853_SNP [dm6]	T	A	2.240e^-4	0.991	INTRON SMSr
3L	22834739	3L_22834739_SNP [dm3] 3L_22841639_SNP [dm6]	G	T	2.247e^-4	0.991	DOWNSTREAM CR45659 INTERGENIC
3R	15200599	3R_15200599_SNP [dm3] 3R_19374877_SNP [dm6]	A	T	2.249e^-4	0.991	UPSTREAM CG3581 DOWNSTREAM CG31404 INTRON Ino80
X	18730960	X_18730960_SNP [dm3] X_18836927_SNP [dm6]	A	T	2.249e^-4	0.991	INTRON Pvf1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22829485	3R_22829485_SNP [dm3] 3R_27003763_SNP [dm6]	A	C	2.257e^-4	0.991	NON_SYNONYMOUS_CODING CG6296 DOWNSTREAM CG31077 INTRON RYa-R	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6092142	3L_6092142_SNP [dm3] 3L_6099042_SNP [dm6]	A	G	2.259e^-4	0.991	INTRON Ets65A
3L	7370203	3L_7370203_SNP [dm3] 3L_7377103_SNP [dm6]	C	G	2.283e^-4	0.991	INTRON SMSr
X	19226990	X_19226990_SNP [dm3] X_19332957_SNP [dm6]	G	T	2.284e^-4	0.991	INTRON nAChRalpha7
3L	9716369	3L_9716369_SNP [dm3] 3L_9723269_SNP [dm6]	T	C	2.289e^-4	0.991	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	8678837	X_8678837_SNP [dm3] X_8784804_SNP [dm6]	C	T	2.310e^-4	0.991	INTRON Lim1
2R	12026894	2R_12026894_SNP [dm3] 2R_16139389_SNP [dm6]	G	C	2.315e^-4	0.991	INTRON Got1
X	4091081	X_4091081_DEL [dm3] X_4197048_DEL [dm6]	TTT	T	2.323e^-4	0.991	INTRON Fas2
2R	20193730	2R_20193730_SNP [dm3] 2R_24306207_SNP [dm6]	G	A	2.332e^-4	0.991	INTRON betaTub60D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	6039023	3R_6039023_SNP [dm3] 3R_10213301_SNP [dm6]	T	A	2.337e^-4	0.991	UPSTREAM Timp INTRON Syn	TF binding site BDTNP1_TFBS_z
3R	9803226	3R_9803226_SNP [dm3] 3R_13977504_SNP [dm6]	C	T	2.342e^-4	0.991	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	765636	3L_765636_SNP [dm3] 3L_765636_SNP [dm6]	G	T	2.345e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24829734	3R_24829734_SNP [dm3] 3R_29004012_SNP [dm6]	A	G	2.347e^-4	0.991	INTRON wat
X	14182736	X_14182736_SNP [dm3] X_14288703_SNP [dm6]	A	G	2.358e^-4	0.991	DOWNSTREAM Muc12Ea INTRON CG9400	TF binding site mE1_TFBS_HSA
2L	4292764	2L_4292764_SNP [dm3] 2L_4292764_SNP [dm6]	T	C	2.362e^-4	0.991	INTRON tutl
3L	22924198	3L_22924198_SNP [dm3] 3L_22931098_SNP [dm6]	A	T	2.363e^-4	0.991	INTERGENIC
2L	11686657	2L_11686657_SNP [dm3] 2L_11686657_SNP [dm6]	T	C	2.365e^-4	0.991	INTERGENIC
2L	19272749	2L_19272749_INS [dm3] 2L_19272749_INS [dm6]	T	TATATAGTATACC...	2.373e^-4	0.991	INTRON CR44190
2L	6823013	2L_6823013_SNP [dm3] 2L_6823013_SNP [dm6]	T	C	2.379e^-4	0.991	SYNONYMOUS_CODING sens-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	12900335	3L_12900335_SNP [dm3] 3L_12907235_SNP [dm6]	T	G	2.386e^-4	0.991	INTERGENIC
2R	20323792	2R_20323792_SNP [dm3] 2R_24436269_SNP [dm6]	G	A	2.393e^-4	0.991	INTERGENIC
3L	13450773	3L_13450773_SNP [dm3] 3L_13457673_SNP [dm6]	A	G	2.395e^-4	0.991	UPSTREAM CG10116 INTRON CG10738	TF binding site mE1_TFBS_cad
3L	6055224	3L_6055224_SNP [dm3] 3L_6062124_SNP [dm6]	C	T	2.400e^-4	0.991	DOWNSTREAM CG6592 INTRON CG10472	TF binding site mE1_TFBS_cad
2R	10998606	2R_10998606_SNP [dm3] 2R_15111101_SNP [dm6]	A	C	2.406e^-4	0.991	INTERGENIC
2L	8447278	2L_8447278_SNP [dm3] 2L_8447278_SNP [dm6]	T	G	2.410e^-4	0.991	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	20051031	2R_20051031_INS [dm3] 2R_24163508_INS [dm6]	A	AG	2.418e^-4	0.991	INTRON CG3328	TF binding site mE1_TFBS_chinmo
2L	22139154	2L_22139154_SNP [dm3] 2L_22139154_SNP [dm6]	G	T	2.426e^-4	0.991	UPSTREAM CG42748 INTRON CG42748	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	21773497	3L_21773497_SNP [dm3] 3L_21780397_SNP [dm6]	T	A	2.427e^-4	0.991	INTERGENIC
3L	6089283	3L_6089283_SNP [dm3] 3L_6096183_SNP [dm6]	A	T	2.428e^-4	0.991	INTRON loj	TF binding site mE1_TFBS_sens
3L	6089291	3L_6089291_SNP [dm3] 3L_6096191_SNP [dm6]	A	C	2.428e^-4	0.991	INTRON loj	TF binding site mE1_TFBS_sens
3L	4338658	3L_4338658_SNP [dm3] 3L_4338658_SNP [dm6]	C	A	2.442e^-4	0.991	INTRON Cip4	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	3891147	3R_3891147_DEL [dm3] 3R_8065425_DEL [dm6]	TGTGA	T	2.449e^-4	0.991	INTRON mAChR-B
3R	13163039	3R_13163039_DEL [dm3] 3R_17337317_DEL [dm6]	CTAAATGAGCCGTTGGC...	C	2.455e^-4	0.991	INTRON beat-IIa
2R	13242799	2R_13242799_SNP [dm3] 2R_17355294_SNP [dm6]	T	G	2.456e^-4	0.991	INTRON mbl
2L	4092890	2L_4092890_SNP [dm3] 2L_4092890_SNP [dm6]	T	G	2.458e^-4	0.991	INTRON ed
2R	15885596	2R_15885596_SNP [dm3] 2R_19998091_SNP [dm6]	T	A	2.460e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2R	16633435	2R_16633435_SNP [dm3] 2R_20745930_SNP [dm6]	G	A	2.469e^-4	0.991	INTRON dpr
3L	11297340	3L_11297340_SNP [dm3] 3L_11304240_SNP [dm6]	G	T	2.471e^-4	0.991	INTERGENIC
X	14182722	X_14182722_DEL [dm3] X_14288689_DEL [dm6]	CAAT	C	2.472e^-4	0.991	DOWNSTREAM Muc12Ea INTRON CG9400	TF binding site mE1_TFBS_HSA
2R	18649804	2R_18649804_DEL [dm3] 2R_22762299_DEL [dm6]	CATATTGACC	C	2.472e^-4	0.991	INTRON CG42260	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17156423	2R_17156423_SNP [dm3] 2R_21268918_SNP [dm6]	C	A	2.476e^-4	0.991	INTRON Rgk3
2L	17506444	2L_17506444_SNP [dm3] 2L_17506444_SNP [dm6]	C	A	2.479e^-4	0.991	INTRON Dhc36C
3L	3354923	3L_3354923_SNP [dm3] 3L_3354923_SNP [dm6]	T	A	2.486e^-4	0.991	INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	20262315	X_20262315_DEL [dm3] X_20391288_DEL [dm6]	TGATGTTTCTTAT...	T	2.513e^-4	0.991	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12834072	3L_12834072_SNP [dm3] 3L_12840972_SNP [dm6]	A	G	2.523e^-4	0.991	INTRON CG10960	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	7363748	3R_7363748_INS [dm3] 3R_11538026_INS [dm6]	C	CTTC	2.524e^-4	0.991	INTRON dpr4
3L	2404639	3L_2404639_SNP [dm3] 3L_2404639_SNP [dm6]	G	A	2.525e^-4	0.991	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	15131658	2L_15131658_SNP [dm3] 2L_15131658_SNP [dm6]	G	C	2.526e^-4	0.991	DOWNSTREAM tRNA:L:35C INTERGENIC
3L	4642797	3L_4642797_SNP [dm3] 3L_4642797_SNP [dm6]	C	T	2.531e^-4	0.991	SYNONYMOUS_CODING axo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10563341	2R_10563341_SNP [dm3] 2R_14675836_SNP [dm6]	C	T	2.541e^-4	0.991	SYNONYMOUS_CODING CG30480 UTR_5_PRIME CG30479 UPSTREAM CG30479 INTRON mspo	TF binding site mE1_TFBS_sens
2R	10998591	2R_10998591_SNP [dm3] 2R_15111086_SNP [dm6]	G	T	2.542e^-4	0.991	INTERGENIC
2R	10998597	2R_10998597_SNP [dm3] 2R_15111092_SNP [dm6]	T	C	2.542e^-4	0.991	INTERGENIC
2R	10998602	2R_10998602_SNP [dm3] 2R_15111097_SNP [dm6]	A	T	2.542e^-4	0.991	INTERGENIC
3L	6983562	3L_6983562_SNP [dm3] 3L_6990462_SNP [dm6]	A	G	2.552e^-4	0.991	UPSTREAM bin INTERGENIC	TF binding site mE1_TFBS_Trl
3L	1858016	3L_1858016_SNP [dm3] 3L_1858016_SNP [dm6]	A	G	2.554e^-4	0.991	SYNONYMOUS_CODING CG12024	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18476916	2L_18476916_SNP [dm3] 2L_18476916_SNP [dm6]	G	A	2.560e^-4	0.991	SPLICE_SITE_REGION CG10283 INTRON CG10283	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	6472399	3L_6472399_INS [dm3] 3L_6479299_INS [dm6]	A	AC	2.568e^-4	0.991	INTRON CG42747
X	10882244	X_10882244_SNP [dm3] X_10988211_SNP [dm6]	T	C	2.579e^-4	0.991	INTRON CG42339
3L	13457771	3L_13457771_SNP [dm3] 3L_13464671_SNP [dm6]	C	T	2.583e^-4	0.991	SYNONYMOUS_CODING CG10738 DOWNSTREAM CG10089	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19305287	2R_19305287_SNP [dm3] 2R_23417764_SNP [dm6]	C	T	2.584e^-4	0.991	DOWNSTREAM CG30411 INTRON CG9812
3L	5225386	3L_5225386_SNP [dm3] 3L_5232286_SNP [dm6]	C	G	2.589e^-4	0.991	INTRON shep
2L	15083917	2L_15083917_SNP [dm3] 2L_15083917_SNP [dm6]	A	T	2.594e^-4	0.991	INTRON CG15270
2R	10998575	2R_10998575_SNP [dm3] 2R_15111070_SNP [dm6]	T	G	2.601e^-4	0.991	INTERGENIC
2R	14778645	2R_14778645_SNP [dm3] 2R_18891140_SNP [dm6]	C	G	2.602e^-4	0.991	INTRON sano
2R	11081244	2R_11081244_SNP [dm3] 2R_15193739_SNP [dm6]	T	G	2.606e^-4	0.991	UPSTREAM Sfp51E DOWNSTREAM CG43829 INTERGENIC
2R	4613332	2R_4613332_SNP [dm3] 2R_8725827_SNP [dm6]	T	C	2.607e^-4	0.991	DOWNSTREAM snoRNA:gcl-a INTRON gcl	TF binding site mE1_TFBS_Trl
2L	2782693	2L_2782693_SNP [dm3] 2L_2782693_SNP [dm6]	A	G	2.608e^-4	0.991	UTR_3_PRIME Syt1
2L	13987258	2L_13987258_DEL [dm3] 2L_13987258_DEL [dm6]	TCCTTGCAACCGCACACACA...	T	2.609e^-4	0.991	INTRON rk	TF binding site mE1_TFBS_HSA
2R	17122056	2R_17122056_SNP [dm3] 2R_21234551_SNP [dm6]	C	T	2.611e^-4	0.991	INTRON ASPP
2R	18649908	2R_18649908_SNP [dm3] 2R_22762403_SNP [dm6]	A	G	2.611e^-4	0.991	INTRON CG42260	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17500763	2R_17500763_SNP [dm3] 2R_21613258_SNP [dm6]	G	C	2.621e^-4	0.991	UPSTREAM CG15673 DOWNSTREAM CG18870 INTERGENIC
2L	8612126	2L_8612126_SNP [dm3] 2L_8612126_SNP [dm6]	G	A	2.622e^-4	0.991	INTRON Sema-1a
3R	4354841	3R_4354841_SNP [dm3] 3R_8529119_SNP [dm6]	C	G	2.625e^-4	0.991	UPSTREAM CG11741 INTERGENIC	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	10998641	2R_10998641_SNP [dm3] 2R_15111136_SNP [dm6]	A	C	2.643e^-4	0.991	INTERGENIC
3L	6254943	3L_6254943_SNP [dm3] 3L_6261843_SNP [dm6]	C	T	2.643e^-4	0.991	UPSTREAM ImpL3 INTRON ImpL3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6218645	3R_6218645_SNP [dm3] 3R_10392923_SNP [dm6]	A	G	2.645e^-4	0.991	INTRON cwo
3L	3574129	3L_3574129_SNP [dm3] 3L_3574129_SNP [dm6]	C	T	2.656e^-4	0.991	INTRON Eip63E
3L	14385481	3L_14385481_SNP [dm3] 3L_14392381_SNP [dm6]	T	C	2.656e^-4	0.991	INTERGENIC
2R	12178178	2R_12178178_SNP [dm3] 2R_16290673_SNP [dm6]	C	A	2.659e^-4	0.991	NON_SYNONYMOUS_CODING JhI-26 UPSTREAM CG30100 & 1 other EXON CR43730
2L	19272737	2L_19272737_DEL [dm3] 2L_19272737_DEL [dm6]	CGTG	C	2.662e^-4	0.991	INTRON CR44190
3R	25902296	3R_25902296_SNP [dm3] 3R_30076574_SNP [dm6]	T	C	2.663e^-4	0.991	INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	22362169	3R_22362169_DEL [dm3] 3R_26536447_DEL [dm6]	TT	T	2.663e^-4	0.991	UTR_5_PRIME scrib INTRON scrib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1727047	3L_1727047_SNP [dm3] 3L_1727047_SNP [dm6]	G	A	2.665e^-4	0.991	INTRON drpr
2L	16239759	2L_16239759_SNP [dm3] 2L_16239759_SNP [dm6]	T	C	2.667e^-4	0.991	INTRON CG42817
2L	21685471	2L_21685471_SNP [dm3] 2L_21685471_SNP [dm6]	A	T	2.667e^-4	0.991	INTRON CG31619	TF binding site mE1_TFBS_sens
3L	7909123	3L_7909123_SNP [dm3] 3L_7916023_SNP [dm6]	G	C	2.676e^-4	0.991	UPSTREAM CG8111 DOWNSTREAM syd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	17696993	2R_17696993_SNP [dm3] 2R_21809488_SNP [dm6]	T	C	2.681e^-4	0.991	INTERGENIC
2R	12994951	2R_12994951_SNP [dm3] 2R_17107446_SNP [dm6]	A	G	2.688e^-4	0.991	UTR_3_PRIME CG30456	TF binding site mE1_TFBS_cad
3L	10346526	3L_10346526_SNP [dm3] 3L_10353426_SNP [dm6]	G	A	2.690e^-4	0.991	INTRON CR44327
3L	7001310	3L_7001310_SNP [dm3] 3L_7008210_SNP [dm6]	T	G	2.690e^-4	0.991	INTRON Mp
3R	19086617	3R_19086617_SNP [dm3] 3R_23260895_SNP [dm6]	C	T	2.692e^-4	0.991	UTR_3_PRIME orb DOWNSTREAM CG13827
3L	6796977	3L_6796977_SNP [dm3] 3L_6803877_SNP [dm6]	T	C	2.695e^-4	0.991	INTERGENIC
2L	2092161	2L_2092161_SNP [dm3] 2L_2092161_SNP [dm6]	T	G	2.701e^-4	0.991	INTRON dpr3
2L	7100403	2L_7100403_SNP [dm3] 2L_7100403_SNP [dm6]	G	A	2.701e^-4	0.991	SYNONYMOUS_CODING Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	6089282	3L_6089282_SNP [dm3] 3L_6096182_SNP [dm6]	A	T	2.704e^-4	0.991	INTRON loj	TF binding site mE1_TFBS_sens
3L	6089865	3L_6089865_DEL [dm3] 3L_6096765_DEL [dm6]	AGA	A	2.714e^-4	0.991	UPSTREAM Ets65A DOWNSTREAM loj INTERGENIC
3L	5489855	3L_5489855_SNP [dm3] 3L_5496755_SNP [dm6]	C	G	2.717e^-4	0.991	DOWNSTREAM blanks INTERGENIC
3L	12834069	3L_12834069_SNP [dm3] 3L_12840969_SNP [dm6]	T	C	2.724e^-4	0.991	INTRON CG10960	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	13570329	3R_13570329_SNP [dm3] 3R_17744607_SNP [dm6]	A	C	2.727e^-4	0.991	INTRON TyrRII	TF binding site mE1_TFBS_cad
3R	19086610	3R_19086610_SNP [dm3] 3R_23260888_SNP [dm6]	T	C	2.728e^-4	0.991	UTR_3_PRIME orb DOWNSTREAM CG13827
3L	4164481	3L_4164481_SNP [dm3] 3L_4164481_SNP [dm6]	A	T	2.731e^-4	0.991	SYNONYMOUS_CODING mas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10250414	2R_10250414_SNP [dm3] 2R_14362909_SNP [dm6]	G	A	2.734e^-4	0.991	UPSTREAM Tfb1 DOWNSTREAM Arc2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	19243493	3R_19243493_SNP [dm3] 3R_23417771_SNP [dm6]	C	A	2.736e^-4	0.991	INTRON CG4374	TF binding site mE1_TFBS_chinmo
2L	12930563	2L_12930563_SNP [dm3] 2L_12930563_SNP [dm6]	G	A	2.738e^-4	0.991	UPSTREAM CR44183 DOWNSTREAM ACXE INTERGENIC
2R	12998721	2R_12998721_SNP [dm3] 2R_17111216_SNP [dm6]	G	A	2.740e^-4	0.991	INTRON CG15611	TF binding site mE1_TFBS_inv
2R	7391365	2R_7391365_SNP [dm3] 2R_11503860_SNP [dm6]	C	T	2.743e^-4	0.991	INTRON inv
3L	11864738	3L_11864738_SNP [dm3] 3L_11871638_SNP [dm6]	C	A	2.743e^-4	0.991	UPSTREAM CG5906 INTRON CG44837	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	13906155	3R_13906155_SNP [dm3] 3R_18080433_SNP [dm6]	C	A	2.745e^-4	0.991	UPSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	4836806	2L_4836806_SNP [dm3] 2L_4836806_SNP [dm6]	C	A	2.751e^-4	0.991	SYNONYMOUS_CODING tank	TF binding site mE1_TFBS_sens
3L	6089858	3L_6089858_SNP [dm3] 3L_6096758_SNP [dm6]	G	T	2.754e^-4	0.991	UPSTREAM Ets65A DOWNSTREAM loj INTERGENIC
3L	14385458	3L_14385458_SNP [dm3] 3L_14392358_SNP [dm6]	A	G	2.758e^-4	0.991	INTERGENIC
2L	18858630	2L_18858630_DEL [dm3] 2L_18858630_DEL [dm6]	AATCGGCGACCAT...	A	2.763e^-4	0.991	UPSTREAM CG10602 DOWNSTREAM tup INTRON CG10602 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
X	9451420	X_9451420_SNP [dm3] X_9557387_SNP [dm6]	A	T	2.772e^-4	0.991	UPSTREAM CG15317 DOWNSTREAM CR42767 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	21685670	2L_21685670_SNP [dm3] 2L_21685670_SNP [dm6]	G	A	2.779e^-4	0.991	INTRON CG31619
X	12234675	X_12234675_SNP [dm3] X_12340642_SNP [dm6]	C	T	2.784e^-4	0.991	INTERGENIC
2R	11409467	2R_11409467_SNP [dm3] 2R_15521962_SNP [dm6]	A	C	2.790e^-4	0.991	INTRON Khc-73
X	12754344	X_12754344_INS [dm3] X_12860311_INS [dm6]	T	TT	2.794e^-4	0.991	INTRON Pde9
3L	9177943	3L_9177943_SNP [dm3] 3L_9184843_SNP [dm6]	A	C	2.798e^-4	0.991	INTERGENIC
2L	12167870	2L_12167870_SNP [dm3] 2L_12167870_SNP [dm6]	T	C	2.808e^-4	0.991	INTRON CG31760
3R	7240337	3R_7240337_SNP [dm3] 3R_11414615_SNP [dm6]	A	T	2.808e^-4	0.991	SYNONYMOUS_CODING Ranbp9	TF binding site mE1_TFBS_cad
3L	2581218	3L_2581218_SNP [dm3] 3L_2581218_SNP [dm6]	A	G	2.813e^-4	0.991	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2170150	3L_2170150_SNP [dm3] 3L_2170150_SNP [dm6]	C	T	2.836e^-4	0.991	SYNONYMOUS_CODING CG5704	TF binding site mE1_TFBS_HSA
3L	12900387	3L_12900387_SNP [dm3] 3L_12907287_SNP [dm6]	C	T	2.839e^-4	0.991	INTERGENIC
X	14296579	X_14296579_SNP [dm3] X_14402546_SNP [dm6]	T	C	2.850e^-4	0.991	INTRON dpr8
3L	9873327	3L_9873327_SNP [dm3] 3L_9880227_SNP [dm6]	T	C	2.851e^-4	0.991	NON_SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
2L	19764969	2L_19764969_SNP [dm3] 2L_19764969_SNP [dm6]	A	G	2.852e^-4	0.991	UPSTREAM fbp DOWNSTREAM bsh INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	1499933	2R_1499933_DEL [dm3] 2R_5612428_DEL [dm6]	CTCACAAATATAACTCTTTA...	TTAGCCAGAAACCGC...	2.853e^-4	0.991	DOWNSTREAM CG17508 INTERGENIC	transposable element FlyBase
X	3602021	X_3602021_SNP [dm3] X_3707988_SNP [dm6]	G	A	2.865e^-4	0.991	INTRON Rala
3L	6092239	3L_6092239_SNP [dm3] 3L_6099139_SNP [dm6]	A	G	2.872e^-4	0.991	INTRON Ets65A
3L	10344903	3L_10344903_SNP [dm3] 3L_10351803_SNP [dm6]	C	T	2.874e^-4	0.991	INTRON CR44327
3L	7381149	3L_7381149_SNP [dm3] 3L_7388049_SNP [dm6]	C	A	2.875e^-4	0.991	UPSTREAM CG8564 INTERGENIC	TF binding site mE1_TFBS_cad
2L	12930559	2L_12930559_SNP [dm3] 2L_12930559_SNP [dm6]	C	T	2.878e^-4	0.991	UPSTREAM CR44183 DOWNSTREAM ACXE INTERGENIC
3R	21388646	3R_21388646_SNP [dm3] 3R_25562924_SNP [dm6]	T	C	2.881e^-4	0.991	INTRON msi
2R	10998512	2R_10998512_SNP [dm3] 2R_15111007_SNP [dm6]	G	T	2.884e^-4	0.991	INTERGENIC
2R	12212097	2R_12212097_SNP [dm3] 2R_16324592_SNP [dm6]	C	T	2.895e^-4	0.991	UTR_3_PRIME CG4282 DOWNSTREAM Vha44
3R	10808270	3R_10808270_SNP [dm3] 3R_14982548_SNP [dm6]	G	A	2.898e^-4	0.991	INTERGENIC
2L	6425437	2L_6425437_SNP [dm3] 2L_6425437_SNP [dm6]	A	T	2.898e^-4	0.991	INTRON Fic	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	20262270	X_20262270_INS [dm3] X_20391243_INS [dm6]	A	ATCAATAATAATTCAA...	2.915e^-4	0.991	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19564919	2R_19564919_SNP [dm3] 2R_23677396_SNP [dm6]	C	G	2.918e^-4	0.991	INTRON Pde8	TF binding site mE1_TFBS_cad
3L	12900270	3L_12900270_SNP [dm3] 3L_12907170_SNP [dm6]	A	G	2.920e^-4	0.991	INTERGENIC
3R	7267654	3R_7267654_INS [dm3] 3R_11441932_INS [dm6]	G	GG	2.924e^-4	0.991	DOWNSTREAM mir-4945 INTRON CG17230 & 1 other
2R	11727201	2R_11727201_SNP [dm3] 2R_15839696_SNP [dm6]	C	G	2.940e^-4	0.991	INTRON tun	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	19272772	2L_19272772_SNP [dm3] 2L_19272772_SNP [dm6]	C	T	2.950e^-4	0.991	EXON CR44190
2R	16957175	2R_16957175_SNP [dm3] 2R_21069670_SNP [dm6]	T	A	2.951e^-4	0.991	UPSTREAM Cht9 DOWNSTREAM CG10527 & 1 other INTERGENIC
3L	4768992	3L_4768992_SNP [dm3] 3L_4768992_SNP [dm6]	C	A	2.953e^-4	0.991	INTRON RhoGEF64C
X	5355641	X_5355641_SNP [dm3] X_5461608_SNP [dm6]	A	C	2.965e^-4	0.991	INTRON SPR
X	5185783	X_5185783_SNP [dm3] X_5291750_SNP [dm6]	A	G	2.969e^-4	0.991	INTERGENIC
3L	13456775	3L_13456775_SNP [dm3] 3L_13463675_SNP [dm6]	T	C	2.989e^-4	0.991	SPLICE_SITE_REGION CG10738 INTRON CG10738	TF binding site mE1_TFBS_cad
2R	16869904	2R_16869904_SNP [dm3] 2R_20982399_SNP [dm6]	T	C	2.992e^-4	0.991	SYNONYMOUS_CODING CG9313	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21349234	3R_21349234_SNP [dm3] 3R_25523512_SNP [dm6]	T	C	3.001e^-4	0.991	INTRON msi
3R	24829722	3R_24829722_SNP [dm3] 3R_29004000_SNP [dm6]	T	C	3.005e^-4	0.991	INTRON wat
3L	7382966	3L_7382966_SNP [dm3] 3L_7389866_SNP [dm6]	G	C	3.013e^-4	0.991	UPSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_inv
X	16848553	X_16848553_INS [dm3] X_16954520_INS [dm6]	C	TGACTTAAGA	3.016e^-4	0.991	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	20194424	3R_20194424_SNP [dm3] 3R_24368702_SNP [dm6]	T	C	3.016e^-4	0.991	SYNONYMOUS_CODING CG33341 UPSTREAM CG42812 & 1 other
3R	20194436	3R_20194436_SNP [dm3] 3R_24368714_SNP [dm6]	T	C	3.016e^-4	0.991	SYNONYMOUS_CODING CG33341 UPSTREAM CG42812 & 1 other
3R	15200601	3R_15200601_DEL [dm3] 3R_19374879_DEL [dm6]	AAATACCCT	GGTC	3.021e^-4	0.991	UPSTREAM CG3581 DOWNSTREAM CG31404 INTRON Ino80
2L	8636207	2L_8636207_SNP [dm3] 2L_8636207_SNP [dm6]	C	T	3.023e^-4	0.991	INTRON Sema-1a
2R	20326604	2R_20326604_SNP [dm3] 2R_24439081_SNP [dm6]	T	C	3.023e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	11238832	3L_11238832_SNP [dm3] 3L_11245732_SNP [dm6]	A	G	3.028e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	15894172	3R_15894172_SNP [dm3] 3R_20068450_SNP [dm6]	T	A	3.030e^-4	0.991	INTERGENIC
3R	21425390	3R_21425390_SNP [dm3] 3R_25599668_SNP [dm6]	G	T	3.035e^-4	0.991	SYNONYMOUS_CODING msi INTRON ymp	TF binding site mE1_TFBS_cad
3L	4686742	3L_4686742_SNP [dm3] 3L_4686742_SNP [dm6]	T	C	3.043e^-4	0.991	DOWNSTREAM CG7514 INTRON axo
2L	4292783	2L_4292783_SNP [dm3] 2L_4292783_SNP [dm6]	A	G	3.053e^-4	0.991	INTRON tutl
3R	25648287	3R_25648287_SNP [dm3] 3R_29822565_SNP [dm6]	A	G	3.054e^-4	0.991	NON_SYNONYMOUS_CODING neo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5431334	3R_5431334_SNP [dm3] 3R_9605612_SNP [dm6]	C	T	3.059e^-4	0.991	INTRON CG8312	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	22139156	2L_22139156_SNP [dm3] 2L_22139156_SNP [dm6]	A	G	3.063e^-4	0.991	UPSTREAM CG42748 INTRON CG42748	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	10969882	3R_10969882_SNP [dm3] 3R_15144160_SNP [dm6]	A	C	3.063e^-4	0.991	INTRON GlyS	TF binding site mE1_TFBS_cad
3R	13279323	3R_13279323_DEL [dm3] 3R_17453601_DEL [dm6]	CCATCCCCTCCCATCCTTCT...	C	3.066e^-4	0.991	INTERGENIC
2R	16381674	2R_16381674_SNP [dm3] 2R_20494169_SNP [dm6]	G	C	3.079e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	254918	2R_254918_SNP [dm3] 2R_4367413_SNP [dm6]	C	T	3.082e^-4	0.991	INTRON Gprk1
X	19239412	X_19239412_SNP [dm3] X_19345379_SNP [dm6]	A	T	3.086e^-4	0.991	INTRON nAChRalpha7
2R	20334302	2R_20334302_SNP [dm3] 2R_24446779_SNP [dm6]	T	C	3.087e^-4	0.991	UTR_3_PRIME CG3483	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18952468	2R_18952468_SNP [dm3] 2R_23064945_SNP [dm6]	C	G	3.088e^-4	0.991	SYNONYMOUS_CODING PPO3 UPSTREAM CG9890	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	16914625	3L_16914625_SNP [dm3] 3L_16921525_SNP [dm6]	T	G	3.098e^-4	0.991	SYNONYMOUS_CODING Lmpt
3R	10998307	3R_10998307_SNP [dm3] 3R_15172585_SNP [dm6]	G	A	3.100e^-4	0.991	DOWNSTREAM Mf INTRON Mf & 1 other
2L	13710746	2L_13710746_SNP [dm3] 2L_13710746_SNP [dm6]	A	G	3.115e^-4	0.991	DOWNSTREAM CG7311 INTRON CG31814
2R	6804993	2R_6804993_SNP [dm3] 2R_10917488_SNP [dm6]	G	A	3.130e^-4	0.991	INTERGENIC
3R	11008848	3R_11008848_SNP [dm3] 3R_15183126_SNP [dm6]	A	T	3.131e^-4	0.991	INTRON Gyc88E
X	8246042	X_8246042_DEL [dm3] X_8352009_DEL [dm6]	ACA	A	3.132e^-4	0.991	INTRON nAChRalpha3
3R	21425426	3R_21425426_SNP [dm3] 3R_25599704_SNP [dm6]	T	C	3.134e^-4	0.991	SYNONYMOUS_CODING msi INTRON ymp	TF binding site mE1_TFBS_cad
3L	9716431	3L_9716431_SNP [dm3] 3L_9723331_SNP [dm6]	A	C	3.136e^-4	0.991	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13457728	3L_13457728_SNP [dm3] 3L_13464628_SNP [dm6]	G	T	3.140e^-4	0.991	SYNONYMOUS_CODING CG10738 DOWNSTREAM CG10089	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11870349	2R_11870349_SNP [dm3] 2R_15982844_SNP [dm6]	C	T	3.140e^-4	0.991	SYNONYMOUS_CODING Strn-Mlck
2R	18632818	2R_18632818_SNP [dm3] 2R_22745313_SNP [dm6]	T	C	3.146e^-4	0.991	INTRON CG42260	TF binding site mE1_TFBS_chinmo
2L	15192404	2L_15192404_SNP [dm3] 2L_15192404_SNP [dm6]	G	A	3.153e^-4	0.991	INTRON CG4168
3R	15200653	3R_15200653_SNP [dm3] 3R_19374931_SNP [dm6]	A	T	3.155e^-4	0.991	UPSTREAM CG3581 DOWNSTREAM CG31404 INTRON Ino80
X	3175463	X_3175463_SNP [dm3] X_3281430_SNP [dm6]	C	T	3.156e^-4	0.991	INTRON dnc
3L	742992	3L_742992_DEL [dm3] 3L_742992_DEL [dm6]	ATGGTTTTTGATAACTAA...	A	3.160e^-4	0.991	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	9109903	2R_9109903_SNP [dm3] 2R_13222398_SNP [dm6]	T	C	3.176e^-4	0.994	UTR_5_PRIME Fsn UPSTREAM Dp & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2R	20329276	2R_20329276_SNP [dm3] 2R_24441753_SNP [dm6]	T	A	3.187e^-4	0.995	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19647480	3R_19647480_SNP [dm3] 3R_23821758_SNP [dm6]	G	C	3.189e^-4	0.995	INTRON CG34355
3R	4373357	3R_4373357_SNP [dm3] 3R_8547635_SNP [dm6]	G	T	3.202e^-4	0.997	DOWNSTREAM CR45574 INTERGENIC
3L	13426284	3L_13426284_DEL [dm3] 3L_13433184_DEL [dm6]	GCTGA	G	3.211e^-4	0.997	DOWNSTREAM tRNA:V4:70BCa & 1 other INTRON CG10713
2L	4596035	2L_4596035_SNP [dm3] 2L_4596035_SNP [dm6]	T	A	3.213e^-4	0.997	UPSTREAM dp INTRON dp	TF binding site mE1_TFBS_HSA
3L	17603716	3L_17603716_SNP [dm3] 3L_17610616_SNP [dm6]	T	G	3.220e^-4	0.998	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl
X	20561606	X_20561606_SNP [dm3] X_20690579_SNP [dm6]	C	T	3.231e^-4	0.999	UPSTREAM run EXON CR45610	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	7945612	2R_7945612_INS [dm3] 2R_12058107_INS [dm6]	A	AA	3.235e^-4	0.999	INTRON Drep-3
X	2400011	X_2400011_SNP [dm3] X_2505978_SNP [dm6]	C	T	3.278e^-4	1	UPSTREAM trol INTRON trol
3R	7560685	3R_7560685_SNP [dm3] 3R_11734963_SNP [dm6]	C	T	3.280e^-4	1	UPSTREAM CG14721 INTERGENIC
3L	8073156	3L_8073156_SNP [dm3] 3L_8080056_SNP [dm6]	A	T	3.289e^-4	1	INTRON Ect4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	13115560	3R_13115560_SNP [dm3] 3R_17289838_SNP [dm6]	C	A	3.291e^-4	1	INTERGENIC
3L	8396707	3L_8396707_SNP [dm3] 3L_8403607_SNP [dm6]	C	A	3.296e^-4	1	NON_SYNONYMOUS_CODING mkg-p UTR_3_PRIME CG33057	TF binding site mE1_TFBS_sens
2L	8636210	2L_8636210_DEL [dm3] 2L_8636210_DEL [dm6]	CAGCAGC	C	3.297e^-4	1	INTRON Sema-1a
2L	1114434	2L_1114434_SNP [dm3] 2L_1114434_SNP [dm6]	T	C	3.302e^-4	1	DOWNSTREAM Pino & 1 other INTERGENIC
2R	10998561	2R_10998561_INS [dm3] 2R_15111056_INS [dm6]	T	TCTATC	3.306e^-4	1	INTERGENIC
X	20570338	X_20570338_INS [dm3] X_20699311_INS [dm6]	G	TTT	3.312e^-4	1	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
3R	4596948	3R_4596948_SNP [dm3] 3R_8771226_SNP [dm6]	C	A	3.316e^-4	1	DOWNSTREAM CG13318 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	18812500	2L_18812500_DEL [dm3] 2L_18812500_DEL [dm6]	GACACACAGTTCAATAA...	CG	3.321e^-4	1	UPSTREAM CG17325 & 1 other INTERGENIC
3L	22386004	3L_22386004_SNP [dm3] 3L_22392904_SNP [dm6]	T	C	3.328e^-4	1	INTRON Ten-m
3R	10272634	3R_10272634_SNP [dm3] 3R_14446912_SNP [dm6]	T	C	3.330e^-4	1	INTRON cv-c
3L	21773515	3L_21773515_SNP [dm3] 3L_21780415_SNP [dm6]	C	T	3.340e^-4	1	INTERGENIC
X	7796524	X_7796524_SNP [dm3] X_7902491_SNP [dm6]	T	C	3.345e^-4	1	SYNONYMOUS_CODING bys	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	14390867	3L_14390867_SNP [dm3] 3L_14397767_SNP [dm6]	A	T	3.367e^-4	1	INTERGENIC
3R	15200634	3R_15200634_MNP [dm3] 3R_19374912_MNP [dm6]	CGG	AAA	3.368e^-4	1	UPSTREAM CG3581 DOWNSTREAM CG31404 INTRON Ino80
3R	25852607	3R_25852607_SNP [dm3] 3R_30026885_SNP [dm6]	G	C	3.382e^-4	1	UPSTREAM Axn INTRON Axn	TF binding site mE1_TFBS_HSA
3L	9731676	3L_9731676_SNP [dm3] 3L_9738576_SNP [dm6]	A	G	3.382e^-4	1	INTRON CG42268
3L	12836573	3L_12836573_SNP [dm3] 3L_12843473_SNP [dm6]	C	T	3.382e^-4	1	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5518264	2L_5518264_SNP [dm3] 2L_5518264_SNP [dm6]	C	T	3.386e^-4	1	SYNONYMOUS_CODING CG14020 DOWNSTREAM CG7382	TF binding site BDTNP1_TFBS_sna mE1_TFBS_sens
2R	15270364	2R_15270364_SNP [dm3] 2R_19382859_SNP [dm6]	T	C	3.388e^-4	1	SYNONYMOUS_CODING CG10073
2L	19598099	2L_19598099_SNP [dm3] 2L_19598099_SNP [dm6]	G	A	3.392e^-4	1	INTRON Lar
2R	10838119	2R_10838119_SNP [dm3] 2R_14950614_SNP [dm6]	G	A	3.393e^-4	1	UPSTREAM aPKC INTRON aPKC
3R	15214327	3R_15214327_SNP [dm3] 3R_19388605_SNP [dm6]	C	T	3.408e^-4	1	SYNONYMOUS_CODING CG3734 INTRON Ino80	TF binding site mE1_TFBS_sens
2R	13855437	2R_13855437_SNP [dm3] 2R_17967932_SNP [dm6]	A	T	3.421e^-4	1	INTERGENIC
3L	8546733	3L_8546733_SNP [dm3] 3L_8553633_SNP [dm6]	G	A	3.430e^-4	1	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14173113	2R_14173113_SNP [dm3] 2R_18285608_SNP [dm6]	A	C	3.436e^-4	1	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6963818	2R_6963818_SNP [dm3] 2R_11076313_SNP [dm6]	T	A	3.455e^-4	1	INTRON luna	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6092172	3L_6092172_SNP [dm3] 3L_6099072_SNP [dm6]	A	C	3.460e^-4	1	INTRON Ets65A
3L	6254991	3L_6254991_SNP [dm3] 3L_6261891_SNP [dm6]	T	C	3.478e^-4	1	UPSTREAM ImpL3 INTRON ImpL3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5724815	3R_5724815_SNP [dm3] 3R_9899093_SNP [dm6]	C	A	3.483e^-4	1	INTRON Glut4EF
2R	13619558	2R_13619558_SNP [dm3] 2R_17732053_SNP [dm6]	G	A	3.489e^-4	1	SYNONYMOUS_CODING CG4984 UTR_3_PRIME CG4975	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11791042	3L_11791042_SNP [dm3] 3L_11797942_SNP [dm6]	A	G	3.499e^-4	1	SYNONYMOUS_CODING Klp68D	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	17465333	3L_17465333_SNP [dm3] 3L_17472233_SNP [dm6]	T	A	3.501e^-4	1	INTRON CG7589
X	17368637	X_17368637_SNP [dm3] X_17474604_SNP [dm6]	C	T	3.508e^-4	1	INTRON CG43658
3R	11421903	3R_11421903_SNP [dm3] 3R_15596181_SNP [dm6]	C	T	3.515e^-4	1	INTERGENIC
3L	7374722	3L_7374722_SNP [dm3] 3L_7381622_SNP [dm6]	T	G	3.523e^-4	1	START_GAINED smid UTR_5_PRIME smid UPSTREAM smid & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
2R	17593717	2R_17593717_SNP [dm3] 2R_21706212_SNP [dm6]	G	A	3.528e^-4	1	INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	12967663	2R_12967663_SNP [dm3] 2R_17080158_SNP [dm6]	C	T	3.538e^-4	1	INTRON CG30460
2R	7391368	2R_7391368_SNP [dm3] 2R_11503863_SNP [dm6]	T	G	3.545e^-4	1	INTRON inv
2R	11530474	2R_11530474_SNP [dm3] 2R_15642969_SNP [dm6]	C	T	3.548e^-4	1	INTRON CG42524
2R	9586179	2R_9586179_INS [dm3] 2R_13698674_INS [dm6]	A	ATCTG	3.559e^-4	1	INTRON fas
2R	16986015	2R_16986015_SNP [dm3] 2R_21098510_SNP [dm6]	T	C	3.583e^-4	1	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	7337324	2L_7337324_SNP [dm3] 2L_7337324_SNP [dm6]	C	T	3.584e^-4	1	INTRON Wnt6
3L	9731689	3L_9731689_SNP [dm3] 3L_9738589_SNP [dm6]	G	T	3.589e^-4	1	INTRON CG42268
3L	5421991	3L_5421991_SNP [dm3] 3L_5428891_SNP [dm6]	G	T	3.593e^-4	1	INTRON CG34391
3R	7264021	3R_7264021_SNP [dm3] 3R_11438299_SNP [dm6]	T	C	3.598e^-4	1	SYNONYMOUS_CODING sals DOWNSTREAM CG5281 INTRON CG17230	TF binding site mE1_TFBS_HSA
2R	19303212	2R_19303212_SNP [dm3] 2R_23415689_SNP [dm6]	T	A	3.599e^-4	1	UPSTREAM CG30411 INTRON CG9812	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	12957149	3L_12957149_SNP [dm3] 3L_12964049_SNP [dm6]	T	G	3.602e^-4	1	DOWNSTREAM Or69a INTERGENIC
3R	17118024	3R_17118024_SNP [dm3] 3R_21292302_SNP [dm6]	T	C	3.625e^-4	1	INTRON SIFaR
X	8946103	X_8946103_SNP [dm3] X_9052070_SNP [dm6]	G	A	3.626e^-4	1	SYNONYMOUS_CODING CG42388	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5238268	3L_5238268_SNP [dm3] 3L_5245168_SNP [dm6]	G	T	3.627e^-4	1	INTRON shep
2L	2721497	2L_2721497_SNP [dm3] 2L_2721497_SNP [dm6]	G	T	3.629e^-4	1	INTERGENIC
2R	10998796	2R_10998796_SNP [dm3] 2R_15111291_SNP [dm6]	G	A	3.634e^-4	1	INTERGENIC
3L	10932037	3L_10932037_SNP [dm3] 3L_10938937_SNP [dm6]	C	G	3.651e^-4	1	INTERGENIC
2L	2053295	2L_2053295_SNP [dm3] 2L_2053295_SNP [dm6]	C	T	3.667e^-4	1	INTERGENIC
X	22253518	X_22253518_SNP [dm3] X_22851682_SNP [dm6]	G	T	3.669e^-4	1	INTRON fog & 1 other
X	14524468	X_14524468_SNP [dm3] X_14630435_SNP [dm6]	A	T	3.676e^-4	1	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23181549	3R_23181549_SNP [dm3] 3R_27355827_SNP [dm6]	G	A	3.677e^-4	1	INTRON CG42534
X	7514597	X_7514597_SNP [dm3] X_7620564_SNP [dm6]	C	T	3.680e^-4	1	INTRON ct	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4560961	X_4560961_SNP [dm3] X_4666928_SNP [dm6]	T	A	3.680e^-4	1	UPSTREAM CG3009 DOWNSTREAM rap INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
3L	6001663	3L_6001663_SNP [dm3] 3L_6008563_SNP [dm6]	C	A	3.685e^-4	1	DOWNSTREAM alphaKap4 INTRON PVRAP
2R	8136809	2R_8136809_SNP [dm3] 2R_12249304_SNP [dm6]	G	T	3.692e^-4	1	INTERGENIC
3R	14665468	3R_14665468_SNP [dm3] 3R_18839746_SNP [dm6]	T	C	3.700e^-4	1	INTRON CG18208
3L	9716377	3L_9716377_SNP [dm3] 3L_9723277_SNP [dm6]	T	C	3.706e^-4	1	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15084737	2L_15084737_SNP [dm3] 2L_15084737_SNP [dm6]	G	C	3.706e^-4	1	INTRON CG15270
2R	15039626	2R_15039626_SNP [dm3] 2R_19152121_SNP [dm6]	C	A	3.716e^-4	1	INTRON ena
3R	4938018	3R_4938018_SNP [dm3] 3R_9112296_SNP [dm6]	C	A	3.717e^-4	1	INTRON pum
X	10335967	X_10335967_SNP [dm3] X_10441934_SNP [dm6]	A	G	3.717e^-4	1	INTRON CG32683
2L	16497251	2L_16497251_SNP [dm3] 2L_16497251_SNP [dm6]	C	A	3.721e^-4	1	INTRON Tpr2
3R	7267305	3R_7267305_SNP [dm3] 3R_11441583_SNP [dm6]	C	G	3.723e^-4	1	DOWNSTREAM mir-4945 INTRON CG17230 & 1 other
3L	6252879	3L_6252879_SNP [dm3] 3L_6259779_SNP [dm6]	G	T	3.742e^-4	1	SYNONYMOUS_CODING ImpL3
3L	6254060	3L_6254060_DEL [dm3] 3L_6260960_DEL [dm6]	CT	C	3.742e^-4	1	INTRON ImpL3
2R	11081217	2R_11081217_SNP [dm3] 2R_15193712_SNP [dm6]	C	T	3.765e^-4	1	UPSTREAM Sfp51E DOWNSTREAM CG43829 INTERGENIC
3L	10344930	3L_10344930_SNP [dm3] 3L_10351830_SNP [dm6]	T	A	3.767e^-4	1	INTRON CR44327
3L	6253803	3L_6253803_SNP [dm3] 3L_6260703_SNP [dm6]	G	A	3.769e^-4	1	SYNONYMOUS_CODING ImpL3
X	5250384	X_5250384_SNP [dm3] X_5356351_SNP [dm6]	T	A	3.776e^-4	1	INTRON SK
3L	2668732	3L_2668732_SNP [dm3] 3L_2668732_SNP [dm6]	C	T	3.779e^-4	1	INTRON Fife
3L	14555445	3L_14555445_SNP [dm3] 3L_14562345_SNP [dm6]	A	T	3.781e^-4	1	INTRON CG34039	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
2R	4546876	2R_4546876_DEL [dm3] 2R_8659371_DEL [dm6]	TT	T	3.784e^-4	1	INTRON ptc	TF binding site mE1_TFBS_cad
3L	8652332	3L_8652332_SNP [dm3] 3L_8659232_SNP [dm6]	T	C	3.785e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6924104	2R_6924104_SNP [dm3] 2R_11036599_SNP [dm6]	A	C	3.789e^-4	1	INTRON luna
3R	6253276	3R_6253276_SNP [dm3] 3R_10427554_SNP [dm6]	G	A	3.789e^-4	1	INTERGENIC
3R	7264253	3R_7264253_SNP [dm3] 3R_11438531_SNP [dm6]	G	A	3.790e^-4	1	SYNONYMOUS_CODING sals INTRON CG17230	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17405027	3L_17405027_SNP [dm3] 3L_17411927_SNP [dm6]	A	T	3.793e^-4	1	INTRON blot
2L	5735339	2L_5735339_SNP [dm3] 2L_5735339_SNP [dm6]	A	G	3.795e^-4	1	SYNONYMOUS_CODING CG11147 INTRON CG11030	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7567930	2R_7567930_SNP [dm3] 2R_11680425_SNP [dm6]	G	T	3.798e^-4	1	INTRON Buffy	TF binding site mE1_TFBS_inv
2L	3474558	2L_3474558_SNP [dm3] 2L_3474558_SNP [dm6]	G	A	3.799e^-4	1	SYNONYMOUS_CODING pgant4 UPSTREAM CR45372	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	5228684	X_5228684_SNP [dm3] X_5334651_SNP [dm6]	C	T	3.802e^-4	1	DOWNSTREAM CanB INTERGENIC
3L	8073144	3L_8073144_SNP [dm3] 3L_8080044_SNP [dm6]	A	G	3.802e^-4	1	INTRON Ect4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	10998557	2R_10998557_SNP [dm3] 2R_15111052_SNP [dm6]	A	T	3.807e^-4	1	INTERGENIC
X	14182731	X_14182731_SNP [dm3] X_14288698_SNP [dm6]	A	T	3.823e^-4	1	DOWNSTREAM Muc12Ea INTRON CG9400	TF binding site mE1_TFBS_HSA
3R	5185243	3R_5185243_SNP [dm3] 3R_9359521_SNP [dm6]	T	C	3.831e^-4	1	UTR_3_PRIME CG45050 DOWNSTREAM CG45050 & 1 other
3R	18958460	3R_18958460_SNP [dm3] 3R_23132738_SNP [dm6]	A	C	3.842e^-4	1	INTRON hh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	7699722	X_7699722_SNP [dm3] X_7805689_SNP [dm6]	A	C	3.844e^-4	1	INTERGENIC
X	16060043	X_16060043_SNP [dm3] X_16166010_SNP [dm6]	A	T	3.848e^-4	1	INTERGENIC
2R	15120698	2R_15120698_SNP [dm3] 2R_19233193_SNP [dm6]	C	T	3.858e^-4	1	INTRON cora
3R	22829486	3R_22829486_SNP [dm3] 3R_27003764_SNP [dm6]	T	G	3.860e^-4	1	SYNONYMOUS_CODING CG6296 DOWNSTREAM CG31077 INTRON RYa-R	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9451414	X_9451414_SNP [dm3] X_9557381_SNP [dm6]	G	A	3.873e^-4	1	UPSTREAM CG15317 DOWNSTREAM CR42767 INTERGENIC	TF binding site mE1_TFBS_HSA
X	9451424	X_9451424_SNP [dm3] X_9557391_SNP [dm6]	A	G	3.873e^-4	1	UPSTREAM CG15317 DOWNSTREAM CR42767 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	14561384	3L_14561384_SNP [dm3] 3L_14568284_SNP [dm6]	G	A	3.876e^-4	1	DOWNSTREAM CG42758 INTERGENIC
3L	12900350	3L_12900350_SNP [dm3] 3L_12907250_SNP [dm6]	G	A	3.903e^-4	1	INTERGENIC
3L	12900358	3L_12900358_INS [dm3] 3L_12907258_INS [dm6]	A	AAA	3.903e^-4	1	INTERGENIC
3L	6255006	3L_6255006_SNP [dm3] 3L_6261906_SNP [dm6]	G	C	3.920e^-4	1	UPSTREAM ImpL3 INTRON ImpL3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14524463	X_14524463_SNP [dm3] X_14630430_SNP [dm6]	A	G	3.921e^-4	1	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12373393	3L_12373393_SNP [dm3] 3L_12380293_SNP [dm6]	G	C	3.921e^-4	1	INTRON Ncc69	TF binding site BDTNP1_TFBS_twi
2R	18180962	2R_18180962_SNP [dm3] 2R_22293457_SNP [dm6]	T	G	3.923e^-4	1	UTR_5_PRIME CG5819 INTRON CG5819
3R	10272628	3R_10272628_SNP [dm3] 3R_14446906_SNP [dm6]	C	T	3.924e^-4	1	INTRON cv-c
X	9451410	X_9451410_MNP [dm3] X_9557377_MNP [dm6]	AGG	CAA	3.945e^-4	1	UPSTREAM CG15317 DOWNSTREAM CR42767 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	11236177	3L_11236177_SNP [dm3] 3L_11243077_SNP [dm6]	C	A	3.956e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	3727536	3L_3727536_SNP [dm3] 3L_3727536_SNP [dm6]	A	G	3.984e^-4	1	INTRON CG32264
3L	6092182	3L_6092182_SNP [dm3] 3L_6099082_SNP [dm6]	C	G	3.991e^-4	1	INTRON Ets65A
3L	4642847	3L_4642847_SNP [dm3] 3L_4642847_SNP [dm6]	A	G	3.992e^-4	1	INTRON axo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6578609	2R_6578609_SNP [dm3] 2R_10691104_SNP [dm6]	G	C	4.007e^-4	1	INTRON stan
3R	25790809	3R_25790809_SNP [dm3] 3R_29965087_SNP [dm6]	C	A	4.014e^-4	1	INTRON TkR99D
3L	10916941	3L_10916941_SNP [dm3] 3L_10923841_SNP [dm6]	A	G	4.022e^-4	1	INTERGENIC
3L	3944694	3L_3944694_SNP [dm3] 3L_3944694_SNP [dm6]	G	T	4.022e^-4	1	INTRON CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
2R	19302735	2R_19302735_SNP [dm3] 2R_23415212_SNP [dm6]	G	A	4.025e^-4	1	UPSTREAM CG30411 INTRON CG9812
2R	19302998	2R_19302998_SNP [dm3] 2R_23415475_SNP [dm6]	A	G	4.025e^-4	1	UPSTREAM CG30411 INTRON CG9812	TF binding site mE1_TFBS_Trl
2R	19303298	2R_19303298_SNP [dm3] 2R_23415775_SNP [dm6]	G	T	4.025e^-4	1	UPSTREAM CG30411 INTRON CG9812	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2R	19304296	2R_19304296_SNP [dm3] 2R_23416773_SNP [dm6]	C	T	4.025e^-4	1	UTR_3_PRIME CG30411 INTRON CG9812	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	19304311	2R_19304311_SNP [dm3] 2R_23416788_SNP [dm6]	C	A	4.025e^-4	1	UTR_3_PRIME CG30411 INTRON CG9812	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	15077943	2L_15077943_SNP [dm3] 2L_15077943_SNP [dm6]	A	T	4.026e^-4	1	INTRON CG15270
3L	5969334	3L_5969334_SNP [dm3] 3L_5976234_SNP [dm6]	G	A	4.031e^-4	1	UPSTREAM CG10479 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	6494322	3R_6494322_SNP [dm3] 3R_10668600_SNP [dm6]	T	C	4.031e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2721499	2L_2721499_SNP [dm3] 2L_2721499_SNP [dm6]	C	T	4.038e^-4	1	INTERGENIC
3R	15196056	3R_15196056_SNP [dm3] 3R_19370334_SNP [dm6]	A	G	4.040e^-4	1	INTRON Ino80
2R	13619571	2R_13619571_SNP [dm3] 2R_17732066_SNP [dm6]	C	A	4.043e^-4	1	SYNONYMOUS_CODING CG4984 UTR_3_PRIME CG4975	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	21790344	3L_21790344_SNP [dm3] 3L_21797244_SNP [dm6]	A	G	4.047e^-4	1	INTERGENIC
3L	3354918	3L_3354918_SNP [dm3] 3L_3354918_SNP [dm6]	A	C	4.053e^-4	1	INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	16727528	3L_16727528_SNP [dm3] 3L_16734428_SNP [dm6]	T	C	4.069e^-4	1	SYNONYMOUS_CODING CG9701
X	12907959	X_12907959_SNP [dm3] X_13013926_SNP [dm6]	G	C	4.077e^-4	1	INTRON rad
2R	13583465	2R_13583465_SNP [dm3] 2R_17695960_SNP [dm6]	G	A	4.078e^-4	1	UTR_3_PRIME rdgBbeta UPSTREAM swi2
3R	14090571	3R_14090571_SNP [dm3] 3R_18264849_SNP [dm6]	G	A	4.080e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	13343794	3L_13343794_SNP [dm3] 3L_13350694_SNP [dm6]	G	A	4.089e^-4	1	SYNONYMOUS_CODING CG17687	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8535891	X_8535891_INS [dm3] X_8641858_INS [dm6]	G	GAG	4.090e^-4	1	INTRON oc
3R	10628531	3R_10628531_SNP [dm3] 3R_14802809_SNP [dm6]	C	A	4.112e^-4	1	SYNONYMOUS_CODING CG14857
3L	10354805	3L_10354805_SNP [dm3] 3L_10361705_SNP [dm6]	T	G	4.120e^-4	1	EXON CR44327	TF binding site mE1_TFBS_cad
3L	12627066	3L_12627066_SNP [dm3] 3L_12633966_SNP [dm6]	G	A	4.131e^-4	1	INTRON CR32111	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5690915	2R_5690915_INS [dm3] 2R_9803410_INS [dm6]	G	GCG	4.131e^-4	1	INTRON CG1688
2L	18811163	2L_18811163_SNP [dm3] 2L_18811163_SNP [dm6]	C	A	4.152e^-4	1	UTR_5_PRIME CG10570 & 1 other UPSTREAM CG10570 & 1 other
3L	11408920	3L_11408920_INS [dm3] 3L_11415820_INS [dm6]	G	GATGGGT	4.156e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	15077941	2L_15077941_SNP [dm3] 2L_15077941_SNP [dm6]	G	T	4.170e^-4	1	INTRON CG15270
3R	15334380	3R_15334380_SNP [dm3] 3R_19508658_SNP [dm6]	G	T	4.175e^-4	1	UPSTREAM Dys INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	16848835	3R_16848835_SNP [dm3] 3R_21023113_SNP [dm6]	A	G	4.177e^-4	1	UTR_5_PRIME CG17278	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	14730019	2L_14730019_SNP [dm3] 2L_14730019_SNP [dm6]	T	C	4.187e^-4	1	UTR_5_PRIME CG42685
2R	6801260	2R_6801260_SNP [dm3] 2R_10913755_SNP [dm6]	T	C	4.191e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14374744	3R_14374744_SNP [dm3] 3R_18549022_SNP [dm6]	G	A	4.195e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16053249	2R_16053249_SNP [dm3] 2R_20165744_SNP [dm6]	T	C	4.196e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	18278806	2R_18278806_SNP [dm3] 2R_22391301_SNP [dm6]	A	G	4.202e^-4	1	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21786168	2L_21786168_DEL [dm3] 2L_21786168_DEL [dm6]	TGTTTTGATTTTTGTACTAT...	T	4.208e^-4	1	INTRON CG31612
2L	21780835	2L_21780835_SNP [dm3] 2L_21780835_SNP [dm6]	A	T	4.208e^-4	1	INTRON CG31612	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9716422	3L_9716422_SNP [dm3] 3L_9723322_SNP [dm6]	C	T	4.212e^-4	1	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	10808271	3R_10808271_SNP [dm3] 3R_14982549_SNP [dm6]	C	T	4.230e^-4	1	INTERGENIC
2R	20139803	2R_20139803_SNP [dm3] 2R_24252280_SNP [dm6]	A	T	4.230e^-4	1	UPSTREAM Ir60a DOWNSTREAM snoRNA:Me18S-A1597 INTRON nord
3R	5714824	3R_5714824_SNP [dm3] 3R_9889102_SNP [dm6]	A	G	4.234e^-4	1	INTRON Glut4EF
2L	6571267	2L_6571267_SNP [dm3] 2L_6571267_SNP [dm6]	G	C	4.240e^-4	1	UTR_3_PRIME CG11319 DOWNSTREAM CG11319 INTRON CG11319
3R	22829468	3R_22829468_SNP [dm3] 3R_27003746_SNP [dm6]	A	C	4.251e^-4	1	NON_SYNONYMOUS_CODING CG6296 DOWNSTREAM CG31077 INTRON RYa-R	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4624701	2L_4624701_SNP [dm3] 2L_4624701_SNP [dm6]	C	T	4.257e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21876295	3R_21876295_SNP [dm3] 3R_26050573_SNP [dm6]	T	C	4.264e^-4	1	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16569852	2R_16569852_SNP [dm3] 2R_20682347_SNP [dm6]	C	T	4.272e^-4	1	INTERGENIC
3L	5225508	3L_5225508_DEL [dm3] 3L_5232408_DEL [dm6]	GCG	G	4.273e^-4	1	INTRON shep
3L	6092236	3L_6092236_SNP [dm3] 3L_6099136_SNP [dm6]	T	C	4.276e^-4	1	INTRON Ets65A
3R	13132160	3R_13132160_SNP [dm3] 3R_17306438_SNP [dm6]	G	A	4.276e^-4	1	INTERGENIC
2R	17654981	2R_17654981_SNP [dm3] 2R_21767476_SNP [dm6]	C	T	4.278e^-4	1	NON_SYNONYMOUS_CODING CG30395 INTRON CG30395
3R	24999363	3R_24999363_SNP [dm3] 3R_29173641_SNP [dm6]	A	C	4.278e^-4	1	UTR_3_PRIME CG14509	TF binding site mE1_TFBS_cad
2L	13710703	2L_13710703_SNP [dm3] 2L_13710703_SNP [dm6]	T	G	4.284e^-4	1	DOWNSTREAM CG7311 INTRON CG31814
2R	14702164	2R_14702164_SNP [dm3] 2R_18814659_SNP [dm6]	T	G	4.289e^-4	1	SYNONYMOUS_CODING CG15096 UPSTREAM CR43418
3L	8245317	3L_8245317_SNP [dm3] 3L_8252217_SNP [dm6]	G	C	4.290e^-4	1	INTRON Dscam4
2R	15876060	2R_15876060_SNP [dm3] 2R_19988555_SNP [dm6]	C	T	4.290e^-4	1	INTERGENIC
2L	6581102	2L_6581102_SNP [dm3] 2L_6581102_SNP [dm6]	A	G	4.290e^-4	1	INTRON CG11319
2L	18367789	2L_18367789_INS [dm3] 2L_18367789_INS [dm6]	C	CACTTCCTC	4.291e^-4	1	INTRON Fas3
3R	12364673	3R_12364673_SNP [dm3] 3R_16538951_SNP [dm6]	C	G	4.292e^-4	1	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_h mE1_TFBS_HSA
3L	11276715	3L_11276715_SNP [dm3] 3L_11283615_SNP [dm6]	A	C	4.306e^-4	1	INTERGENIC
3L	11276725	3L_11276725_SNP [dm3] 3L_11283625_SNP [dm6]	A	T	4.306e^-4	1	INTERGENIC
3L	9941522	3L_9941522_SNP [dm3] 3L_9948422_SNP [dm6]	A	G	4.312e^-4	1	INTRON CG34356
3L	7383154	3L_7383154_SNP [dm3] 3L_7390054_SNP [dm6]	C	T	4.322e^-4	1	UPSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	13191749	X_13191749_SNP [dm3] X_13297716_SNP [dm6]	C	T	4.324e^-4	1	INTRON CG1764 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	7259839	3R_7259839_SNP [dm3] 3R_11434117_SNP [dm6]	A	C	4.324e^-4	1	DOWNSTREAM CG5276 INTRON CG6744	TF binding site mE1_TFBS_cad
3R	25844950	3R_25844950_SNP [dm3] 3R_30019228_SNP [dm6]	G	A	4.324e^-4	1	SYNONYMOUS_CODING Mgat2	TF binding site mE1_TFBS_chinmo
2R	11178135	2R_11178135_SNP [dm3] 2R_15290630_SNP [dm6]	T	C	4.326e^-4	1	INTRON Trpm
2L	19798092	2L_19798092_SNP [dm3] 2L_19798092_SNP [dm6]	A	G	4.331e^-4	1	INTRON sick
2R	8361055	2R_8361055_SNP [dm3] 2R_12473550_SNP [dm6]	G	T	4.337e^-4	1	NON_SYNONYMOUS_CODING CG8550 UPSTREAM Dh44-R2
3R	23883442	3R_23883442_SNP [dm3] 3R_28057720_SNP [dm6]	A	T	4.348e^-4	1	INTRON CG34362
3L	3951088	3L_3951088_SNP [dm3] 3L_3951088_SNP [dm6]	C	G	4.350e^-4	1	DOWNSTREAM CG14984 INTERGENIC
X	15291616	X_15291616_SNP [dm3] X_15397583_SNP [dm6]	G	A	4.356e^-4	1	SPLICE_SITE_REGION Cngl INTRON Cngl	TF binding site mE1_TFBS_chinmo
3L	12684187	3L_12684187_INS [dm3] 3L_12691087_INS [dm6]	G	GCTG	4.363e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21847503	3R_21847503_SNP [dm3] 3R_26021781_SNP [dm6]	G	A	4.369e^-4	1	UPSTREAM E_spl_m3-HLH & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4787945	3L_4787945_SNP [dm3] 3L_4787945_SNP [dm6]	A	C	4.369e^-4	1	INTRON RhoGEF64C
2L	21055222	2L_21055222_SNP [dm3] 2L_21055222_SNP [dm6]	A	T	4.373e^-4	1	NON_SYNONYMOUS_CODING Itgbetanu	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	15733591	2R_15733591_SNP [dm3] 2R_19846086_SNP [dm6]	C	A	4.385e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	22267450	X_22267450_SNP [dm3] X_22865614_SNP [dm6]	A	T	4.386e^-4	1	INTRON CG42346
2L	21785894	2L_21785894_SNP [dm3] 2L_21785894_SNP [dm6]	G	C	4.422e^-4	1	INTRON CG31612
3L	2507287	3L_2507287_SNP [dm3] 3L_2507287_SNP [dm6]	C	T	4.422e^-4	1	UTR_3_PRIME Spn DOWNSTREAM Spn
3L	7382971	3L_7382971_SNP [dm3] 3L_7389871_SNP [dm6]	A	T	4.424e^-4	1	UPSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_inv
3R	2335078	3R_2335078_SNP [dm3] 3R_6509356_SNP [dm6]	A	T	4.429e^-4	1	INTERGENIC
X	16862378	X_16862378_SNP [dm3] X_16968345_SNP [dm6]	C	T	4.432e^-4	1	DOWNSTREAM CG45002 INTRON CG9086	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	8136797	2R_8136797_SNP [dm3] 2R_12249292_SNP [dm6]	G	A	4.441e^-4	1	INTERGENIC
3R	15200630	3R_15200630_INS [dm3] 3R_19374908_INS [dm6]	A	ATA	4.451e^-4	1	UPSTREAM CG3581 DOWNSTREAM CG31404 INTRON Ino80
X	6491213	X_6491213_SNP [dm3] X_6597180_SNP [dm6]	G	A	4.463e^-4	1	SYNONYMOUS_CODING APC7 UPSTREAM APC7 DOWNSTREAM Pat1
3L	9717919	3L_9717919_SNP [dm3] 3L_9724819_SNP [dm6]	A	G	4.474e^-4	1	SYNONYMOUS_CODING defl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6092254	3L_6092254_SNP [dm3] 3L_6099154_SNP [dm6]	A	T	4.480e^-4	1	INTRON Ets65A
2R	12995036	2R_12995036_SNP [dm3] 2R_17107531_SNP [dm6]	T	A	4.488e^-4	1	UTR_3_PRIME CG30456
X	4091246	X_4091246_SNP [dm3] X_4197213_SNP [dm6]	A	G	4.490e^-4	1	INTRON Fas2
2L	2052095	2L_2052095_SNP [dm3] 2L_2052095_SNP [dm6]	C	A	4.490e^-4	1	INTERGENIC
2L	11686646	2L_11686646_SNP [dm3] 2L_11686646_SNP [dm6]	A	T	4.491e^-4	1	INTERGENIC
3R	7264166	3R_7264166_SNP [dm3] 3R_11438444_SNP [dm6]	C	T	4.496e^-4	1	SYNONYMOUS_CODING sals DOWNSTREAM CG5281 INTRON CG17230	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14384699	3L_14384699_SNP [dm3] 3L_14391599_SNP [dm6]	A	G	4.504e^-4	1	INTERGENIC
3L	7909074	3L_7909074_SNP [dm3] 3L_7915974_SNP [dm6]	C	A	4.511e^-4	1	UPSTREAM CG8111 DOWNSTREAM syd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	6055272	3L_6055272_SNP [dm3] 3L_6062172_SNP [dm6]	A	T	4.512e^-4	1	DOWNSTREAM CG6592 INTRON CG10472	TF binding site mE1_TFBS_cad
X	14182743	X_14182743_SNP [dm3] X_14288710_SNP [dm6]	G	T	4.515e^-4	1	DOWNSTREAM Muc12Ea INTRON CG9400	TF binding site mE1_TFBS_HSA
X	14182744	X_14182744_SNP [dm3] X_14288711_SNP [dm6]	G	A	4.515e^-4	1	DOWNSTREAM Muc12Ea INTRON CG9400	TF binding site mE1_TFBS_HSA
2R	12447415	2R_12447415_SNP [dm3] 2R_16559910_SNP [dm6]	G	A	4.530e^-4	1	SYNONYMOUS_CODING DAT
2R	16424980	2R_16424980_SNP [dm3] 2R_20537475_SNP [dm6]	G	A	4.531e^-4	1	SYNONYMOUS_CODING CG13423
2R	8366292	2R_8366292_SNP [dm3] 2R_12478787_SNP [dm6]	C	T	4.540e^-4	1	INTRON Dh44-R2
3R	7262959	3R_7262959_SNP [dm3] 3R_11437237_SNP [dm6]	C	T	4.542e^-4	1	UTR_3_PRIME CG5281 UPSTREAM CG17230 DOWNSTREAM sals	TF binding site mE1_TFBS_cad
3R	14376982	3R_14376982_SNP [dm3] 3R_18551260_SNP [dm6]	A	T	4.552e^-4	1	INTERGENIC
X	12907914	X_12907914_SNP [dm3] X_13013881_SNP [dm6]	C	T	4.559e^-4	1	INTRON rad
3L	6092260	3L_6092260_SNP [dm3] 3L_6099160_SNP [dm6]	T	G	4.564e^-4	1	INTRON Ets65A
3R	7261179	3R_7261179_SNP [dm3] 3R_11435457_SNP [dm6]	G	C	4.569e^-4	1	SYNONYMOUS_CODING CG6744 UPSTREAM CG5281	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1888291	2L_1888291_SNP [dm3] 2L_1888291_SNP [dm6]	C	T	4.572e^-4	1	INTRON CG7337
2R	12545159	2R_12545159_SNP [dm3] 2R_16657654_SNP [dm6]	T	G	4.573e^-4	1	INTRON Picot
2R	4675443	2R_4675443_SNP [dm3] 2R_8787938_SNP [dm6]	A	G	4.575e^-4	1	INTERGENIC
3L	9716420	3L_9716420_INS [dm3] 3L_9723320_INS [dm6]	G	TTA	4.589e^-4	1	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9130969	2R_9130969_SNP [dm3] 2R_13243464_SNP [dm6]	A	C	4.592e^-4	1	DOWNSTREAM CR45278 INTERGENIC
2L	8351064	2L_8351064_SNP [dm3] 2L_8351064_SNP [dm6]	A	C	4.598e^-4	1	UTR_3_PRIME CG7778 DOWNSTREAM CG7778	TF binding site mE1_TFBS_zfh1
X	5184576	X_5184576_SNP [dm3] X_5290543_SNP [dm6]	A	G	4.604e^-4	1	INTERGENIC
2R	10836983	2R_10836983_SNP [dm3] 2R_14949478_SNP [dm6]	T	A	4.604e^-4	1	INTRON aPKC
2L	5839421	2L_5839421_SNP [dm3] 2L_5839421_SNP [dm6]	C	G	4.613e^-4	1	INTRON TrissinR
3R	24907428	3R_24907428_SNP [dm3] 3R_29081706_SNP [dm6]	C	T	4.614e^-4	1	INTRON CG11873
X	15134317	X_15134317_SNP [dm3] X_15240284_SNP [dm6]	G	C	4.615e^-4	1	INTERGENIC
2L	6871143	2L_6871143_SNP [dm3] 2L_6871143_SNP [dm6]	G	A	4.623e^-4	1	UPSTREAM Nha1 DOWNSTREAM CR44915 INTERGENIC
3L	6254404	3L_6254404_SNP [dm3] 3L_6261304_SNP [dm6]	T	A	4.637e^-4	1	UPSTREAM ImpL3 INTRON ImpL3
2L	15093739	2L_15093739_SNP [dm3] 2L_15093739_SNP [dm6]	A	T	4.640e^-4	1	INTRON CG15270
2L	17305797	2L_17305797_SNP [dm3] 2L_17305797_SNP [dm6]	A	G	4.652e^-4	1	INTERGENIC
3L	7366862	3L_7366862_SNP [dm3] 3L_7373762_SNP [dm6]	C	T	4.667e^-4	1	DOWNSTREAM akirin & 1 other INTERGENIC
3R	18478641	3R_18478641_SNP [dm3] 3R_22652919_SNP [dm6]	G	T	4.669e^-4	1	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4152861	3L_4152861_SNP [dm3] 3L_4152861_SNP [dm6]	G	A	4.672e^-4	1	DOWNSTREAM CG1299 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16986049	2R_16986049_SNP [dm3] 2R_21098544_SNP [dm6]	T	C	4.673e^-4	1	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	21782310	2L_21782310_SNP [dm3] 2L_21782310_SNP [dm6]	G	T	4.677e^-4	1	SYNONYMOUS_CODING CG11630 INTRON CG31612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	14678270	2R_14678270_SNP [dm3] 2R_18790765_SNP [dm6]	T	C	4.681e^-4	1	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8506498	2L_8506498_SNP [dm3] 2L_8506498_SNP [dm6]	A	T	4.684e^-4	1	INTRON Dh31
3R	11511827	3R_11511827_SNP [dm3] 3R_15686105_SNP [dm6]	A	T	4.687e^-4	1	INTRON pxb	TF binding site BDTNP1_TFBS_hb
2L	1384234	2L_1384234_SNP [dm3] 2L_1384234_SNP [dm6]	A	T	4.702e^-4	1	INTRON lea
X	1194700	X_1194700_SNP [dm3] X_1300667_SNP [dm6]	C	T	4.704e^-4	1	INTRON DAAM
2L	19797522	2L_19797522_SNP [dm3] 2L_19797522_SNP [dm6]	G	A	4.708e^-4	1	INTRON sick
3R	13583841	3R_13583841_INS [dm3] 3R_17758119_INS [dm6]	T	TT	4.709e^-4	1	INTRON TyrR
2L	12401959	2L_12401959_DEL [dm3] 2L_12401959_DEL [dm6]	CAACAAAAATGC...	C	4.713e^-4	1	UTR_3_PRIME Pkd2
3L	5945033	3L_5945033_SNP [dm3] 3L_5951933_SNP [dm6]	G	A	4.715e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5185787	X_5185787_SNP [dm3] X_5291754_SNP [dm6]	T	A	4.716e^-4	1	INTERGENIC
2R	6807734	2R_6807734_SNP [dm3] 2R_10920229_SNP [dm6]	G	A	4.728e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	20786219	2L_20786219_SNP [dm3] 2L_20786219_SNP [dm6]	G	C	4.732e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	14197969	3L_14197969_SNP [dm3] 3L_14204869_SNP [dm6]	C	T	4.739e^-4	1	UPSTREAM nuf DOWNSTREAM CG32141 INTRON nuf	TF binding site BDTNP1_TFBS_dl
3L	14197970	3L_14197970_SNP [dm3] 3L_14204870_SNP [dm6]	C	T	4.739e^-4	1	UPSTREAM nuf DOWNSTREAM CG32141 INTRON nuf	TF binding site BDTNP1_TFBS_dl
3L	12851479	3L_12851479_SNP [dm3] 3L_12858379_SNP [dm6]	T	A	4.751e^-4	1	SYNONYMOUS_CODING CG32107 DOWNSTREAM Ent3
2R	15265805	2R_15265805_SNP [dm3] 2R_19378300_SNP [dm6]	A	T	4.755e^-4	1	SYNONYMOUS_CODING CG10062	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11409484	2R_11409484_SNP [dm3] 2R_15521979_SNP [dm6]	T	C	4.759e^-4	1	INTRON Khc-73
2L	4353390	2L_4353390_SNP [dm3] 2L_4353390_SNP [dm6]	G	C	4.762e^-4	1	SYNONYMOUS_CODING CG15429 UTR_5_PRIME CG15429	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5425016	3R_5425016_SNP [dm3] 3R_9599294_SNP [dm6]	C	T	4.772e^-4	1	INTRON CG8312	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	21749203	3L_21749203_SNP [dm3] 3L_21756103_SNP [dm6]	C	A	4.775e^-4	1	INTRON Syn1	TF binding site mE1_TFBS_chinmo
3R	6189761	3R_6189761_SNP [dm3] 3R_10364039_SNP [dm6]	G	A	4.776e^-4	1	SYNONYMOUS_CODING Rfx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12045358	3R_12045358_SNP [dm3] 3R_16219636_SNP [dm6]	A	G	4.780e^-4	1	INTERGENIC
2R	16976044	2R_16976044_INS [dm3] 2R_21088539_INS [dm6]	A	AG	4.795e^-4	1	UTR_3_PRIME Treh & 1 other DOWNSTREAM Treh	TF binding site mE1_TFBS_cad
2R	11409504	2R_11409504_SNP [dm3] 2R_15521999_SNP [dm6]	T	C	4.797e^-4	1	SPLICE_SITE_REGION Khc-73 INTRON Khc-73
X	16129663	X_16129663_SNP [dm3] X_16235630_SNP [dm6]	G	A	4.805e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	6766966	X_6766966_SNP [dm3] X_6872933_SNP [dm6]	G	A	4.809e^-4	1	INTRON CG43736	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20532530	X_20532530_SNP [dm3] X_20661503_SNP [dm6]	G	T	4.834e^-4	1	UPSTREAM CG1835 DOWNSTREAM Cyp6v1 INTERGENIC
2R	9459342	2R_9459342_SNP [dm3] 2R_13571837_SNP [dm6]	A	G	4.836e^-4	1	SYNONYMOUS_CODING CG42807	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15084985	2L_15084985_SNP [dm3] 2L_15084985_SNP [dm6]	A	T	4.838e^-4	1	INTRON CG15270
3L	4348864	3L_4348864_SNP [dm3] 3L_4348864_SNP [dm6]	T	C	4.838e^-4	1	INTRON Cip4
3L	5605553	3L_5605553_SNP [dm3] 3L_5612453_SNP [dm6]	T	A	4.850e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	6254972	3L_6254972_SNP [dm3] 3L_6261872_SNP [dm6]	G	A	4.851e^-4	1	UPSTREAM ImpL3 INTRON ImpL3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15090891	2L_15090891_SNP [dm3] 2L_15090891_SNP [dm6]	G	C	4.863e^-4	1	SPLICE_SITE_REGION CG15270 INTRON CG15270
2R	12282058	2R_12282058_SNP [dm3] 2R_16394553_SNP [dm6]	G	A	4.864e^-4	1	INTRON Sema-2b
3R	23900244	3R_23900244_SNP [dm3] 3R_28074522_SNP [dm6]	G	A	4.869e^-4	1	INTRON CG34362	TF binding site mE1_TFBS_chinmo
2L	6187425	2L_6187425_SNP [dm3] 2L_6187425_SNP [dm6]	A	C	4.875e^-4	1	INTRON CG34380	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10003254	2R_10003254_SNP [dm3] 2R_14115749_SNP [dm6]	T	C	4.882e^-4	1	INTRON Prosap
3R	23900120	3R_23900120_SNP [dm3] 3R_28074398_SNP [dm6]	A	G	4.884e^-4	1	INTRON CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7593284	3L_7593284_SNP [dm3] 3L_7600184_SNP [dm6]	A	T	4.887e^-4	1	INTRON CG33275
2L	18863617	2L_18863617_SNP [dm3] 2L_18863617_SNP [dm6]	G	T	4.891e^-4	1	INTRON tup
2L	13785313	2L_13785313_SNP [dm3] 2L_13785313_SNP [dm6]	G	C	4.895e^-4	1	SYNONYMOUS_CODING CG31731 UPSTREAM CG16890 EXON CR44847	TF binding site mE1_TFBS_sens
2R	18295589	2R_18295589_SNP [dm3] 2R_22408084_SNP [dm6]	A	C	4.900e^-4	1	UTR_3_PRIME CG6044 UPSTREAM ventrally-expressed-protein-D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	6219136	3R_6219136_SNP [dm3] 3R_10393414_SNP [dm6]	T	A	4.911e^-4	1	INTRON cwo
X	15512455	X_15512455_SNP [dm3] X_15618422_SNP [dm6]	A	G	4.928e^-4	1	INTRON sog	TF binding site BDTNP1_TFBS_dl
3R	4369002	3R_4369002_SNP [dm3] 3R_8543280_SNP [dm6]	C	A	4.929e^-4	1	INTERGENIC
3L	14195711	3L_14195711_SNP [dm3] 3L_14202611_SNP [dm6]	C	G	4.935e^-4	1	UPSTREAM CG32141 INTRON nuf	TF binding site mE1_TFBS_cad
2R	8360529	2R_8360529_SNP [dm3] 2R_12473024_SNP [dm6]	T	G	4.938e^-4	1	SYNONYMOUS_CODING CG8550
3L	18346603	3L_18346603_SNP [dm3] 3L_18353503_SNP [dm6]	G	T	4.954e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	3944669	3L_3944669_SNP [dm3] 3L_3944669_SNP [dm6]	G	A	4.962e^-4	1	INTRON CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
3R	13115561	3R_13115561_SNP [dm3] 3R_17289839_SNP [dm6]	G	A	4.963e^-4	1	INTERGENIC
3R	8638979	3R_8638979_SNP [dm3] 3R_12813257_SNP [dm6]	C	G	4.982e^-4	1	INTRON CG31345
3R	11272369	3R_11272369_SNP [dm3] 3R_15446647_SNP [dm6]	C	A	4.983e^-4	1	INTRON AdamTS-A	TF binding site mE1_TFBS_cad
3R	25852608	3R_25852608_SNP [dm3] 3R_30026886_SNP [dm6]	T	C	4.989e^-4	1	UPSTREAM Axn INTRON Axn	TF binding site mE1_TFBS_HSA
3L	1718230	3L_1718230_SNP [dm3] 3L_1718230_SNP [dm6]	A	G	4.992e^-4	1	INTRON drpr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14139458	X_14139458_SNP [dm3] X_14245425_SNP [dm6]	G	T	4.998e^-4	1	INTRON CG32599
2L	7058946	2L_7058946_SNP [dm3] 2L_7058946_SNP [dm6]	A	G	5.017e^-4	1	SYNONYMOUS_CODING Mnn1 DOWNSTREAM CG31907	TF binding site mE1_TFBS_cad
2R	11170047	2R_11170047_SNP [dm3] 2R_15282542_SNP [dm6]	T	C	5.023e^-4	1	INTRON Trpm
3L	3100077	3L_3100077_SNP [dm3] 3L_3100077_SNP [dm6]	T	A	5.023e^-4	1	INTRON Cht7
X	5735973	X_5735973_SNP [dm3] X_5841940_SNP [dm6]	A	T	5.026e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10916931	3L_10916931_SNP [dm3] 3L_10923831_SNP [dm6]	G	A	5.041e^-4	1	INTERGENIC
2L	1460951	2L_1460951_SNP [dm3] 2L_1460951_SNP [dm6]	T	A	5.056e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	9716433	3L_9716433_SNP [dm3] 3L_9723333_SNP [dm6]	A	T	5.059e^-4	1	UPSTREAM defl & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	12433119	3R_12433119_SNP [dm3] 3R_16607397_SNP [dm6]	G	A	5.061e^-4	1	INTERGENIC
2R	17940120	2R_17940120_SNP [dm3] 2R_22052615_SNP [dm6]	A	G	5.066e^-4	1	INTERGENIC
2R	9147038	2R_9147038_SNP [dm3] 2R_13259533_SNP [dm6]	G	A	5.067e^-4	1	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2R	20327032	2R_20327032_SNP [dm3] 2R_24439509_SNP [dm6]	G	A	5.081e^-4	1	INTERGENIC
2R	15016163	2R_15016163_SNP [dm3] 2R_19128658_SNP [dm6]	T	A	5.083e^-4	1	UPSTREAM botv INTRON CG15117
2R	6752378	2R_6752378_SNP [dm3] 2R_10864873_SNP [dm6]	A	T	5.091e^-4	1	INTRON CG30015
3R	5482021	3R_5482021_SNP [dm3] 3R_9656299_SNP [dm6]	A	C	5.091e^-4	1	SYNONYMOUS_CODING CG9492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1673178	3L_1673178_SNP [dm3] 3L_1673178_SNP [dm6]	A	G	5.093e^-4	1	UPSTREAM CG13930 INTERGENIC
3L	9138799	3L_9138799_SNP [dm3] 3L_9145699_SNP [dm6]	A	T	5.100e^-4	1	DOWNSTREAM Rdl & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	20316793	2R_20316793_SNP [dm3] 2R_24429270_SNP [dm6]	C	T	5.101e^-4	1	UPSTREAM prom DOWNSTREAM CG15873 INTERGENIC
2R	11722955	2R_11722955_SNP [dm3] 2R_15835450_SNP [dm6]	G	A	5.102e^-4	1	UPSTREAM Poxn INTRON tun	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3L	4164058	3L_4164058_SNP [dm3] 3L_4164058_SNP [dm6]	G	A	5.105e^-4	1	SYNONYMOUS_CODING mas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6924102	2R_6924102_SNP [dm3] 2R_11036597_SNP [dm6]	C	G	5.106e^-4	1	INTRON luna
2R	14220774	2R_14220774_SNP [dm3] 2R_18333269_SNP [dm6]	C	T	5.106e^-4	1	INTRON sbb
2R	15945537	2R_15945537_SNP [dm3] 2R_20058032_SNP [dm6]	A	C	5.106e^-4	1	UPSTREAM CR44631 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
2R	16688392	2R_16688392_SNP [dm3] 2R_20800887_SNP [dm6]	A	T	5.108e^-4	1	INTERGENIC
2R	16688423	2R_16688423_SNP [dm3] 2R_20800918_SNP [dm6]	G	A	5.108e^-4	1	INTERGENIC
2R	8713232	2R_8713232_SNP [dm3] 2R_12825727_SNP [dm6]	G	A	5.110e^-4	1	INTERGENIC
2R	13242903	2R_13242903_SNP [dm3] 2R_17355398_SNP [dm6]	G	A	5.113e^-4	1	INTRON mbl
2R	11571818	2R_11571818_SNP [dm3] 2R_15684313_SNP [dm6]	C	T	5.114e^-4	1	SYNONYMOUS_CODING Ranbp11 DOWNSTREAM CG30082 EXON CR43429	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	3470412	X_3470412_SNP [dm3] X_3576379_SNP [dm6]	T	G	5.121e^-4	1	INTRON AstA-R1
X	17109980	X_17109980_SNP [dm3] X_17215947_SNP [dm6]	C	T	5.123e^-4	1	SYNONYMOUS_CODING CG5162
2R	9138417	2R_9138417_SNP [dm3] 2R_13250912_SNP [dm6]	G	A	5.125e^-4	1	SYNONYMOUS_CODING CG4712 DOWNSTREAM CG4714
2R	5698098	2R_5698098_SNP [dm3] 2R_9810593_SNP [dm6]	G	A	5.127e^-4	1	DOWNSTREAM CG1648 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	19045207	3L_19045207_SNP [dm3] 3L_19052107_SNP [dm6]	A	G	5.127e^-4	1	UPSTREAM CR44675 & 1 other DOWNSTREAM CG43407 INTERGENIC
2R	15902238	2R_15902238_SNP [dm3] 2R_20014733_SNP [dm6]	A	G	5.128e^-4	1	DOWNSTREAM CR44629 INTERGENIC
X	3932882	X_3932882_SNP [dm3] X_4038849_SNP [dm6]	A	G	5.129e^-4	1	INTERGENIC
2L	12267140	2L_12267140_SNP [dm3] 2L_12267140_SNP [dm6]	G	C	5.129e^-4	1	INTRON aret
3R	6241134	3R_6241134_SNP [dm3] 3R_10415412_SNP [dm6]	C	T	5.134e^-4	1	SYNONYMOUS_CODING CG6345	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17368952	X_17368952_SNP [dm3] X_17474919_SNP [dm6]	T	A	5.135e^-4	1	UTR_5_PRIME CG43658 INTRON CG43658
3L	11404306	3L_11404306_SNP [dm3] 3L_11411206_SNP [dm6]	T	C	5.138e^-4	1	INTERGENIC
3L	12834481	3L_12834481_SNP [dm3] 3L_12841381_SNP [dm6]	C	G	5.144e^-4	1	INTRON CG10960
X	8642148	X_8642148_SNP [dm3] X_8748115_SNP [dm6]	C	A	5.148e^-4	1	INTERGENIC
2R	13195904	2R_13195904_SNP [dm3] 2R_17308399_SNP [dm6]	G	A	5.154e^-4	1	INTRON mbl
2R	12995045	2R_12995045_SNP [dm3] 2R_17107540_SNP [dm6]	T	C	5.154e^-4	1	UTR_3_PRIME CG30456
3R	9885962	3R_9885962_SNP [dm3] 3R_14060240_SNP [dm6]	G	A	5.156e^-4	1	INTRON foxo
3R	7267416	3R_7267416_SNP [dm3] 3R_11441694_SNP [dm6]	C	T	5.159e^-4	1	DOWNSTREAM mir-4945 INTRON CG17230 & 1 other
2R	19564920	2R_19564920_SNP [dm3] 2R_23677397_SNP [dm6]	C	T	5.160e^-4	1	SPLICE_SITE_REGION Pde8 INTRON Pde8	TF binding site mE1_TFBS_cad
3L	11390008	3L_11390008_SNP [dm3] 3L_11396908_SNP [dm6]	T	G	5.161e^-4	1	UPSTREAM CG44362 INTERGENIC
2L	19272743	2L_19272743_SNP [dm3] 2L_19272743_SNP [dm6]	C	G	5.162e^-4	1	INTRON CR44190
2R	16985883	2R_16985883_SNP [dm3] 2R_21098378_SNP [dm6]	T	G	5.173e^-4	1	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	18863618	2L_18863618_SNP [dm3] 2L_18863618_SNP [dm6]	A	G	5.175e^-4	1	INTRON tup
X	9451417	X_9451417_SNP [dm3] X_9557384_SNP [dm6]	C	A	5.178e^-4	1	UPSTREAM CG15317 DOWNSTREAM CR42767 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	13270117	2R_13270117_SNP [dm3] 2R_17382612_SNP [dm6]	T	A	5.179e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
X	4092312	X_4092312_INS [dm3] X_4198279_INS [dm6]	A	AG	5.181e^-4	1	INTRON Fas2	TF binding site BDTNP1_TFBS_dl
2L	10501683	2L_10501683_SNP [dm3] 2L_10501683_SNP [dm6]	C	A	5.193e^-4	1	INTRON Myo31DF
X	9490774	X_9490774_SNP [dm3] X_9596741_SNP [dm6]	T	G	5.193e^-4	1	INTERGENIC
2R	11471097	2R_11471097_SNP [dm3] 2R_15583592_SNP [dm6]	A	G	5.196e^-4	1	INTERGENIC
3R	9960823	3R_9960823_SNP [dm3] 3R_14135101_SNP [dm6]	T	C	5.202e^-4	1	INTERGENIC
2R	15016160	2R_15016160_SNP [dm3] 2R_19128655_SNP [dm6]	G	A	5.208e^-4	1	UPSTREAM botv INTRON CG15117
2L	12325115	2L_12325115_SNP [dm3] 2L_12325115_SNP [dm6]	T	C	5.211e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19686963	2L_19686963_SNP [dm3] 2L_19686963_SNP [dm6]	G	A	5.212e^-4	1	INTRON Lar
2L	3101146	2L_3101146_SNP [dm3] 2L_3101146_SNP [dm6]	A	C	5.215e^-4	1	INTRON toc
X	18979116	X_18979116_SNP [dm3] X_19085083_SNP [dm6]	G	T	5.221e^-4	1	INTERGENIC
2L	15552136	2L_15552136_SNP [dm3] 2L_15552136_SNP [dm6]	G	A	5.230e^-4	1	UPSTREAM kek3 DOWNSTREAM CG15256 INTERGENIC
3L	12900512	3L_12900512_SNP [dm3] 3L_12907412_SNP [dm6]	T	A	5.234e^-4	1	INTERGENIC
2L	2008322	2L_2008322_SNP [dm3] 2L_2008322_SNP [dm6]	A	T	5.234e^-4	1	UPSTREAM Nplp4 & 1 other DOWNSTREAM CR45712 INTERGENIC	TF binding site mE1_TFBS_cad
3L	13862769	3L_13862769_SNP [dm3] 3L_13869669_SNP [dm6]	C	T	5.240e^-4	1	UTR_3_PRIME dysc
3R	20194163	3R_20194163_SNP [dm3] 3R_24368441_SNP [dm6]	T	G	5.252e^-4	1	NON_SYNONYMOUS_CODING CG33341 UPSTREAM CG42812	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19798157	2L_19798157_SNP [dm3] 2L_19798157_SNP [dm6]	T	C	5.256e^-4	1	INTRON sick
3L	3353317	3L_3353317_SNP [dm3] 3L_3353317_SNP [dm6]	C	A	5.258e^-4	1	INTRON kst	TF binding site mE1_TFBS_cad
3L	3353318	3L_3353318_SNP [dm3] 3L_3353318_SNP [dm6]	T	A	5.258e^-4	1	INTRON kst	TF binding site mE1_TFBS_cad
3L	6092278	3L_6092278_SNP [dm3] 3L_6099178_SNP [dm6]	T	G	5.265e^-4	1	INTRON Ets65A
2L	1114623	2L_1114623_SNP [dm3] 2L_1114623_SNP [dm6]	T	C	5.267e^-4	1	DOWNSTREAM Pino & 1 other INTERGENIC
X	6767045	X_6767045_INS [dm3] X_6873012_INS [dm6]	A	ATAA	5.269e^-4	1	INTRON CG43736	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25559302	3R_25559302_SNP [dm3] 3R_29733580_SNP [dm6]	A	G	5.270e^-4	1	UTR_3_PRIME Kul
2R	12333487	2R_12333487_SNP [dm3] 2R_16445982_SNP [dm6]	T	A	5.271e^-4	1	UPSTREAM CG15925 INTERGENIC
3R	21920379	3R_21920379_SNP [dm3] 3R_26094657_SNP [dm6]	G	A	5.272e^-4	1	UPSTREAM CR44319 INTRON dys	regulatory region REDfly_CRMs
2R	6827493	2R_6827493_SNP [dm3] 2R_10939988_SNP [dm6]	C	A	5.282e^-4	1	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
2R	20355656	2R_20355656_SNP [dm3] 2R_24468133_SNP [dm6]	A	G	5.286e^-4	1	INTRON CG13579
2R	17027493	2R_17027493_SNP [dm3] 2R_21139988_SNP [dm6]	G	C	5.294e^-4	1	UPSTREAM Magi INTRON Magi
3R	9119864	3R_9119864_SNP [dm3] 3R_13294142_SNP [dm6]	A	G	5.300e^-4	1	UPSTREAM wntD & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	12646436	3L_12646436_SNP [dm3] 3L_12653336_SNP [dm6]	A	T	5.305e^-4	1	UPSTREAM CR43431 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	10847892	2L_10847892_SNP [dm3] 2L_10847892_SNP [dm6]	A	G	5.306e^-4	1	SYNONYMOUS_CODING porin UPSTREAM Porin2
2R	11330331	2R_11330331_SNP [dm3] 2R_15442826_SNP [dm6]	A	G	5.324e^-4	1	INTRON CG43729
X	2926488	X_2926488_SNP [dm3] X_3032455_SNP [dm6]	A	C	5.340e^-4	1	INTRON kirre
2L	20753866	2L_20753866_SNP [dm3] 2L_20753866_SNP [dm6]	G	A	5.341e^-4	1	SYNONYMOUS_CODING Ns4 DOWNSTREAM CG9323	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9452400	X_9452400_INS [dm3] X_9558367_INS [dm6]	A	AG	5.353e^-4	1	DOWNSTREAM Cubn EXON CR42767
2L	9547228	2L_9547228_SNP [dm3] 2L_9547228_SNP [dm6]	T	C	5.367e^-4	1	SYNONYMOUS_CODING CG13114 DOWNSTREAM jp
2R	20355319	2R_20355319_SNP [dm3] 2R_24467796_SNP [dm6]	T	C	5.368e^-4	1	INTRON CG13579
X	677884	X_677884_SNP [dm3] X_783851_SNP [dm6]	G	A	5.369e^-4	1	UTR_3_PRIME fz3 UPSTREAM tw DOWNSTREAM fz3
X	8246285	X_8246285_SNP [dm3] X_8352252_SNP [dm6]	A	G	5.374e^-4	1	INTRON nAChRalpha3
X	4603500	X_4603500_SNP [dm3] X_4709467_SNP [dm6]	A	G	5.378e^-4	1	INTRON Proc-R
3R	6627759	3R_6627759_SNP [dm3] 3R_10802037_SNP [dm6]	T	G	5.382e^-4	1	NON_SYNONYMOUS_CODING CG14692
2L	14731754	2L_14731754_SNP [dm3] 2L_14731754_SNP [dm6]	G	A	5.383e^-4	1	DOWNSTREAM CR44857 INTERGENIC
X	4791535	X_4791535_SNP [dm3] X_4897502_SNP [dm6]	A	C	5.402e^-4	1	INTRON CG42594
X	16848545	X_16848545_DEL [dm3] X_16954512_DEL [dm6]	AAAA	A	5.406e^-4	1	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22025752	3R_22025752_SNP [dm3] 3R_26200030_SNP [dm6]	G	A	5.418e^-4	1	INTRON CR44320	TF binding site BDTNP1_TFBS_twi
2L	12225387	2L_12225387_SNP [dm3] 2L_12225387_SNP [dm6]	G	A	5.424e^-4	1	INTRON aret
3L	7901954	3L_7901954_SNP [dm3] 3L_7908854_SNP [dm6]	T	A	5.434e^-4	1	INTRON pbl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr

By genomic position
Variant impact
Gene name

Wing_Intervein_Area8 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results