DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.372e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.005936

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	10.5844	0.005

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2149 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	12116819	2R_12116819_SNP [dm3] 2R_16229314_SNP [dm6]	A	G	3.236e^-6	0.869	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14555445	3L_14555445_SNP [dm3] 3L_14562345_SNP [dm6]	A	T	4.792e^-6	0.869	INTRON CG34039	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
2R	19127148	2R_19127148_SNP [dm3] 2R_23239625_SNP [dm6]	T	G	5.880e^-6	0.869	INTERGENIC
3L	413912	3L_413912_SNP [dm3] 3L_413912_SNP [dm6]	C	T	6.234e^-6	0.869	INTERGENIC	TF binding site mE1_TFBS_Kr
X	5452736	X_5452736_SNP [dm3] X_5558703_SNP [dm6]	C	T	6.389e^-6	0.869	INTRON Vsx2
2L	22020494	2L_22020494_SNP [dm3] 2L_22020494_SNP [dm6]	A	G	7.024e^-6	0.869	DOWNSTREAM CR33987 INTRON tio	TF binding site mE1_TFBS_Trl
2L	6463898	2L_6463898_SNP [dm3] 2L_6463898_SNP [dm6]	A	T	7.277e^-6	0.869	UTR_5_PRIME CG16947	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	9463855	2L_9463855_SNP [dm3] 2L_9463855_SNP [dm6]	C	T	8.360e^-6	0.869	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_kn
3L	3143873	3L_3143873_SNP [dm3] 3L_3143873_SNP [dm6]	T	A	1.070e^-5	0.869	UTR_5_PRIME CG1291 UPSTREAM CG11537	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	3126389	2L_3126389_SNP [dm3] 2L_3126389_SNP [dm6]	C	T	1.108e^-5	0.869	NON_SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	2868311	3R_2868311_INS [dm3] 3R_7042589_INS [dm6]	C	CGGA	1.187e^-5	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	4144537	2L_4144537_SNP [dm3] 2L_4144537_SNP [dm6]	T	G	1.191e^-5	0.869	INTERGENIC
3R	20231634	3R_20231634_SNP [dm3] 3R_24405912_SNP [dm6]	G	A	1.311e^-5	0.869	INTRON nAChRalpha1
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	1.349e^-5	0.869	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5886015	3L_5886015_SNP [dm3] 3L_5892915_SNP [dm6]	C	G	1.608e^-5	0.869	INTERGENIC
3L	16202334	3L_16202334_SNP [dm3] 3L_16209234_SNP [dm6]	A	T	1.647e^-5	0.869	INTERGENIC	TF binding site mE1_TFBS_cad
3L	16896011	3L_16896011_SNP [dm3] 3L_16902911_SNP [dm6]	A	T	1.779e^-5	0.869	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo
3L	16202321	3L_16202321_SNP [dm3] 3L_16209221_SNP [dm6]	G	T	1.781e^-5	0.869	INTERGENIC	TF binding site mE1_TFBS_cad
3R	3469607	3R_3469607_SNP [dm3] 3R_7643885_SNP [dm6]	C	T	1.935e^-5	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11849590	2R_11849590_SNP [dm3] 2R_15962085_SNP [dm6]	T	G	1.986e^-5	0.869	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4400876	3R_4400876_INS [dm3] 3R_8575154_INS [dm6]	T	TT	2.034e^-5	0.869	INTERGENIC
3R	20489343	3R_20489343_SNP [dm3] 3R_24663621_SNP [dm6]	G	A	2.075e^-5	0.869	INTRON slo	regulatory region REDfly_CRMs
2L	21802262	2L_21802262_SNP [dm3] 2L_21802262_SNP [dm6]	A	G	2.091e^-5	0.869	INTERGENIC
3L	10264888	3L_10264888_SNP [dm3] 3L_10271788_SNP [dm6]	C	A	2.138e^-5	0.869	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2868309	3R_2868309_SNP [dm3] 3R_7042587_SNP [dm6]	G	A	2.187e^-5	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	6253276	3R_6253276_SNP [dm3] 3R_10427554_SNP [dm6]	G	A	2.201e^-5	0.869	INTERGENIC
3L	14813948	3L_14813948_SNP [dm3] 3L_14820848_SNP [dm6]	G	A	2.242e^-5	0.869	INTRON CG17839
3R	20231859	3R_20231859_SNP [dm3] 3R_24406137_SNP [dm6]	A	C	2.246e^-5	0.869	INTRON nAChRalpha1
X	4094020	X_4094020_SNP [dm3] X_4199987_SNP [dm6]	T	C	2.263e^-5	0.869	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	15483333	3L_15483333_SNP [dm3] 3L_15490233_SNP [dm6]	T	C	2.428e^-5	0.869	INTERGENIC
2R	12116981	2R_12116981_SNP [dm3] 2R_16229476_SNP [dm6]	C	T	2.470e^-5	0.869	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2171647	3L_2171647_SNP [dm3] 3L_2171647_SNP [dm6]	A	G	2.532e^-5	0.869	UPSTREAM CG5704 EXON CR15821
2R	8137681	2R_8137681_SNP [dm3] 2R_12250176_SNP [dm6]	A	C	2.632e^-5	0.869	INTERGENIC
2L	4143125	2L_4143125_DEL [dm3] 2L_4143125_DEL [dm6]	TAGATTGAATGTGAA...	T	2.761e^-5	0.869	INTERGENIC
3R	15767069	3R_15767069_SNP [dm3] 3R_19941347_SNP [dm6]	G	A	2.860e^-5	0.869	INTRON Hs6st
3R	13139524	3R_13139524_SNP [dm3] 3R_17313802_SNP [dm6]	G	T	2.994e^-5	0.869	INTERGENIC
3R	12504233	3R_12504233_SNP [dm3] 3R_16678511_SNP [dm6]	A	G	3.099e^-5	0.869	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	20995023	3R_20995023_SNP [dm3] 3R_25169301_SNP [dm6]	C	G	3.240e^-5	0.869	DOWNSTREAM lobo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	510296	2L_510296_SNP [dm3] 2L_510296_SNP [dm6]	C	G	3.456e^-5	0.869	INTRON ush	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	9430498	2L_9430498_SNP [dm3] 2L_9430498_SNP [dm6]	T	A	3.460e^-5	0.869	UPSTREAM FucTB & 1 other INTRON FucTB
2R	16425872	2R_16425872_SNP [dm3] 2R_20538367_SNP [dm6]	T	C	3.529e^-5	0.869	DOWNSTREAM CG13427 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
2L	20991750	2L_20991750_SNP [dm3] 2L_20991750_SNP [dm6]	A	C	3.549e^-5	0.869	INTRON CG42238
3L	16202369	3L_16202369_SNP [dm3] 3L_16209269_SNP [dm6]	G	A	3.551e^-5	0.869	INTERGENIC	TF binding site mE1_TFBS_cad
3R	20489476	3R_20489476_SNP [dm3] 3R_24663754_SNP [dm6]	G	T	3.589e^-5	0.869	INTRON slo	regulatory region REDfly_CRMs
2R	8137710	2R_8137710_SNP [dm3] 2R_12250205_SNP [dm6]	C	A	3.664e^-5	0.869	INTERGENIC
3R	21344585	3R_21344585_SNP [dm3] 3R_25518863_SNP [dm6]	G	T	3.693e^-5	0.869	INTRON msi	TF binding site mE1_TFBS_Trl
2L	376777	2L_376777_SNP [dm3] 2L_376777_SNP [dm6]	G	A	3.898e^-5	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	11598183	2R_11598183_SNP [dm3] 2R_15710678_SNP [dm6]	A	G	4.004e^-5	0.869	DOWNSTREAM CG30083 INTERGENIC
2L	2389910	2L_2389910_SNP [dm3] 2L_2389910_SNP [dm6]	A	G	4.029e^-5	0.869	SYNONYMOUS_CODING CG43750
2R	13506075	2R_13506075_SNP [dm3] 2R_17618570_SNP [dm6]	T	G	4.069e^-5	0.869	UPSTREAM CG44403 INTRON CG10936
3R	9771775	3R_9771775_SNP [dm3] 3R_13946053_SNP [dm6]	G	C	4.132e^-5	0.869	UPSTREAM Art6 INTERGENIC
2L	21802210	2L_21802210_SNP [dm3] 2L_21802210_SNP [dm6]	G	A	4.154e^-5	0.869	INTERGENIC
2L	4144530	2L_4144530_SNP [dm3] 2L_4144530_SNP [dm6]	G	A	4.157e^-5	0.869	INTERGENIC
3R	6253307	3R_6253307_SNP [dm3] 3R_10427585_SNP [dm6]	G	T	4.391e^-5	0.869	INTERGENIC
3R	9771782	3R_9771782_SNP [dm3] 3R_13946060_SNP [dm6]	A	G	4.392e^-5	0.869	UPSTREAM Art6 INTERGENIC
3L	7777439	3L_7777439_SNP [dm3] 3L_7784339_SNP [dm6]	C	T	4.487e^-5	0.869	INTRON CG32369
2L	20128377	2L_20128377_SNP [dm3] 2L_20128377_SNP [dm6]	C	T	4.511e^-5	0.869	INTERGENIC
2L	16759323	2L_16759323_SNP [dm3] 2L_16759323_SNP [dm6]	C	T	4.573e^-5	0.869	INTRON ppk17
3R	25089055	3R_25089055_SNP [dm3] 3R_29263333_SNP [dm6]	A	G	4.599e^-5	0.869	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	10925619	2R_10925619_SNP [dm3] 2R_15038114_SNP [dm6]	A	G	4.727e^-5	0.869	INTRON hbs
X	13137037	X_13137037_SNP [dm3] X_13243004_SNP [dm6]	C	T	4.882e^-5	0.869	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	13137038	X_13137038_SNP [dm3] X_13243005_SNP [dm6]	A	G	5.019e^-5	0.869	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	13553816	3L_13553816_DEL [dm3] 3L_13560716_DEL [dm6]	GTCGACGTAGCGACACT...	G	5.205e^-5	0.869	INTRON bru-3
3L	15411404	3L_15411404_SNP [dm3] 3L_15418304_SNP [dm6]	G	T	5.219e^-5	0.869	INTERGENIC
2L	9426788	2L_9426788_SNP [dm3] 2L_9426788_SNP [dm6]	C	T	5.313e^-5	0.869	UTR_5_PRIME Fbp2 UPSTREAM Fbp2 DOWNSTREAM Mco1
3L	11168317	3L_11168317_SNP [dm3] 3L_11175217_SNP [dm6]	A	T	5.320e^-5	0.869	INTRON CG14142
2L	18871879	2L_18871879_SNP [dm3] 2L_18871879_SNP [dm6]	C	T	5.351e^-5	0.869	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13570329	3R_13570329_SNP [dm3] 3R_17744607_SNP [dm6]	A	C	5.361e^-5	0.869	INTRON TyrRII	TF binding site mE1_TFBS_cad
2L	18858630	2L_18858630_DEL [dm3] 2L_18858630_DEL [dm6]	AATCGGCGACCAT...	A	5.399e^-5	0.869	UPSTREAM CG10602 DOWNSTREAM tup INTRON CG10602 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
2L	18328109	2L_18328109_SNP [dm3] 2L_18328109_SNP [dm6]	C	G	5.457e^-5	0.869	INTRON Fas3
2R	12633063	2R_12633063_SNP [dm3] 2R_16745558_SNP [dm6]	G	A	5.510e^-5	0.869	UTR_3_PRIME CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad
2L	3439088	2L_3439088_SNP [dm3] 2L_3439088_SNP [dm6]	T	G	5.546e^-5	0.869	INTERGENIC
2L	18871864	2L_18871864_SNP [dm3] 2L_18871864_SNP [dm6]	C	T	5.601e^-5	0.869	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12633060	2R_12633060_SNP [dm3] 2R_16745555_SNP [dm6]	C	T	5.729e^-5	0.869	UTR_3_PRIME CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad
2L	11686657	2L_11686657_SNP [dm3] 2L_11686657_SNP [dm6]	T	C	5.773e^-5	0.869	INTERGENIC
2L	18871861	2L_18871861_SNP [dm3] 2L_18871861_SNP [dm6]	G	A	5.782e^-5	0.869	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8391972	3L_8391972_SNP [dm3] 3L_8398872_SNP [dm6]	A	T	5.869e^-5	0.869	INTRON CG7120
3L	3143885	3L_3143885_SNP [dm3] 3L_3143885_SNP [dm6]	G	C	5.950e^-5	0.869	UTR_5_PRIME CG1291 UPSTREAM CG11537	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	1091466	2L_1091466_DEL [dm3] 2L_1091466_DEL [dm6]	AATTAATTAGTTTTTA...	A	5.972e^-5	0.869	INTRON CG4629
2R	17894354	2R_17894354_SNP [dm3] 2R_22006849_SNP [dm6]	A	G	6.217e^-5	0.869	INTRON CG34370
2L	4143122	2L_4143122_SNP [dm3] 2L_4143122_SNP [dm6]	A	G	6.254e^-5	0.869	INTERGENIC
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	6.291e^-5	0.869	INTRON dnc
3R	15213950	3R_15213950_SNP [dm3] 3R_19388228_SNP [dm6]	G	A	6.354e^-5	0.869	DOWNSTREAM CR34285 INTRON Ino80 & 1 other	TF binding site mE1_TFBS_sens
2R	16868926	2R_16868926_SNP [dm3] 2R_20981421_SNP [dm6]	T	C	6.377e^-5	0.869	SYNONYMOUS_CODING CG9313	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11575711	2R_11575711_SNP [dm3] 2R_15688206_SNP [dm6]	G	T	6.533e^-5	0.869	NON_SYNONYMOUS_CODING Cep89 SPLICE_SITE_REGION Cep89 DOWNSTREAM Ranbp11	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10435085	3R_10435085_SNP [dm3] 3R_14609363_SNP [dm6]	G	T	6.572e^-5	0.869	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	2687377	3L_2687377_SNP [dm3] 3L_2687377_SNP [dm6]	C	A	6.598e^-5	0.869	INTRON Fife
3R	26671686	3R_26671686_SNP [dm3] 3R_30845964_SNP [dm6]	T	A	6.601e^-5	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	11927532	3L_11927532_SNP [dm3] 3L_11934432_SNP [dm6]	G	T	6.703e^-5	0.869	SYNONYMOUS_CODING byn INTRON CG44837	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25753160	3R_25753160_SNP [dm3] 3R_29927438_SNP [dm6]	T	C	6.785e^-5	0.869	UTR_5_PRIME CG15522
3R	6050546	3R_6050546_SNP [dm3] 3R_10224824_SNP [dm6]	A	G	6.898e^-5	0.869	UPSTREAM CG34107 & 2 others INTERGENIC
3R	6105532	3R_6105532_SNP [dm3] 3R_10279810_SNP [dm6]	C	T	6.917e^-5	0.869	INTRON CG43143
3L	9735039	3L_9735039_SNP [dm3] 3L_9741939_SNP [dm6]	A	T	7.041e^-5	0.869	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15192354	2L_15192354_SNP [dm3] 2L_15192354_SNP [dm6]	C	T	7.045e^-5	0.869	INTRON CG4168
2L	8447278	2L_8447278_SNP [dm3] 2L_8447278_SNP [dm6]	T	G	7.059e^-5	0.869	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	3143837	3L_3143837_SNP [dm3] 3L_3143837_SNP [dm6]	G	C	7.064e^-5	0.869	UTR_5_PRIME CG1291 UPSTREAM CG11537	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	6299585	3R_6299585_SNP [dm3] 3R_10473863_SNP [dm6]	G	T	7.172e^-5	0.869	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	7349516	3R_7349516_SNP [dm3] 3R_11523794_SNP [dm6]	C	G	7.205e^-5	0.869	INTERGENIC
3L	4533938	3L_4533938_SNP [dm3] 3L_4533938_SNP [dm6]	A	C	7.209e^-5	0.869	INTRON CG11353
3R	19769710	3R_19769710_SNP [dm3] 3R_23943988_SNP [dm6]	G	A	7.369e^-5	0.869	SYNONYMOUS_CODING CG12268 UPSTREAM Gdh	TF binding site mE1_TFBS_cad
3R	8110850	3R_8110850_SNP [dm3] 3R_12285128_SNP [dm6]	T	A	7.399e^-5	0.869	INTRON svp
2L	6743782	2L_6743782_INS [dm3] 2L_6743782_INS [dm6]	A	ACTA	7.414e^-5	0.869	DOWNSTREAM CG31910 INTRON CG11221
2L	4143121	2L_4143121_SNP [dm3] 2L_4143121_SNP [dm6]	G	T	7.504e^-5	0.869	INTERGENIC
3R	6105638	3R_6105638_DEL [dm3] 3R_10279916_DEL [dm6]	ATGACTCCA	A	7.520e^-5	0.869	INTRON CG43143
3R	18478641	3R_18478641_SNP [dm3] 3R_22652919_SNP [dm6]	G	T	7.585e^-5	0.869	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14561076	3L_14561076_SNP [dm3] 3L_14567976_SNP [dm6]	T	C	7.586e^-5	0.869	SYNONYMOUS_CODING CG42758
3L	4152861	3L_4152861_SNP [dm3] 3L_4152861_SNP [dm6]	G	A	7.647e^-5	0.869	DOWNSTREAM CG1299 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4737896	3L_4737896_SNP [dm3] 3L_4737896_SNP [dm6]	G	A	7.661e^-5	0.869	INTRON RhoGEF64C
2R	7045208	2R_7045208_SNP [dm3] 2R_11157703_SNP [dm6]	C	A	7.694e^-5	0.869	INTRON CG13229
2L	5454299	2L_5454299_SNP [dm3] 2L_5454299_SNP [dm6]	T	G	7.711e^-5	0.869	INTERGENIC
3R	25405876	3R_25405876_SNP [dm3] 3R_29580154_SNP [dm6]	A	G	7.737e^-5	0.869	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	26486380	3R_26486380_SNP [dm3] 3R_30660658_SNP [dm6]	A	T	7.737e^-5	0.869	INTERGENIC
3R	21876370	3R_21876370_SNP [dm3] 3R_26050648_SNP [dm6]	T	G	7.749e^-5	0.869	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11464759	3R_11464759_SNP [dm3] 3R_15639037_SNP [dm6]	C	T	7.921e^-5	0.869	DOWNSTREAM CG43336 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	8391974	3L_8391974_SNP [dm3] 3L_8398874_SNP [dm6]	G	A	7.959e^-5	0.869	INTRON CG7120
3L	14931260	3L_14931260_SNP [dm3] 3L_14938160_SNP [dm6]	G	C	7.969e^-5	0.869	INTRON DCX-EMAP
2L	8845512	2L_8845512_SNP [dm3] 2L_8845512_SNP [dm6]	A	G	7.972e^-5	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	13136787	X_13136787_SNP [dm3] X_13242754_SNP [dm6]	C	T	8.091e^-5	0.869	INTRON mew	TF binding site BDTNP1_TFBS_da
3L	15411491	3L_15411491_SNP [dm3] 3L_15418391_SNP [dm6]	C	G	8.178e^-5	0.869	INTERGENIC
X	12960117	X_12960117_SNP [dm3] X_13066084_SNP [dm6]	A	G	8.237e^-5	0.869	INTRON rad
3L	15206488	3L_15206488_SNP [dm3] 3L_15213388_SNP [dm6]	G	T	8.274e^-5	0.869	INTERGENIC
3L	10842862	3L_10842862_SNP [dm3] 3L_10849762_SNP [dm6]	T	C	8.528e^-5	0.869	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	8740651	2L_8740651_SNP [dm3] 2L_8740651_SNP [dm6]	T	A	8.557e^-5	0.869	UTR_5_PRIME raw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2R	20033431	2R_20033431_SNP [dm3] 2R_24145908_SNP [dm6]	A	G	8.788e^-5	0.869	INTRON Dat
3L	20901759	3L_20901759_SNP [dm3] 3L_20908659_SNP [dm6]	T	C	8.814e^-5	0.869	INTERGENIC
3R	12188898	3R_12188898_SNP [dm3] 3R_16363176_SNP [dm6]	G	C	8.831e^-5	0.869	INTRON CG14880
2L	4933994	2L_4933994_SNP [dm3] 2L_4933994_SNP [dm6]	T	A	8.851e^-5	0.869	INTRON hoe2
3L	7721690	3L_7721690_SNP [dm3] 3L_7728590_SNP [dm6]	T	G	8.867e^-5	0.869	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
X	16443965	X_16443965_SNP [dm3] X_16549932_SNP [dm6]	G	A	8.953e^-5	0.869	INTRON Arp2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9463889	2L_9463889_DEL [dm3] 2L_9463889_DEL [dm6]	CA	G	8.986e^-5	0.869	UTR_3_PRIME numb DOWNSTREAM numb
2L	8447265	2L_8447265_SNP [dm3] 2L_8447265_SNP [dm6]	A	G	8.996e^-5	0.869	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	12146627	3L_12146627_SNP [dm3] 3L_12153527_SNP [dm6]	T	C	9.001e^-5	0.869	SYNONYMOUS_CODING Nrx-IV
2L	11686631	2L_11686631_DEL [dm3] 2L_11686631_DEL [dm6]	ATTACAGGTAATA...	T	9.051e^-5	0.869	INTERGENIC
X	21081580	X_21081580_SNP [dm3] X_21210553_SNP [dm6]	A	G	9.054e^-5	0.869	INTRON CG32521
3L	14815465	3L_14815465_SNP [dm3] 3L_14822365_SNP [dm6]	G	A	9.083e^-5	0.869	INTRON CG17839
3R	6105630	3R_6105630_SNP [dm3] 3R_10279908_SNP [dm6]	T	A	9.109e^-5	0.869	INTRON CG43143
3R	25759599	3R_25759599_SNP [dm3] 3R_29933877_SNP [dm6]	C	T	9.204e^-5	0.869	NON_SYNONYMOUS_CODING CG42557 START_GAINED CG42558 UTR_5_PRIME CG42558 UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22018071	3R_22018071_SNP [dm3] 3R_26192349_SNP [dm6]	A	T	9.261e^-5	0.869	INTERGENIC
3L	10691472	3L_10691472_SNP [dm3] 3L_10698372_SNP [dm6]	T	A	9.276e^-5	0.869	INTERGENIC
X	4093939	X_4093939_SNP [dm3] X_4199906_SNP [dm6]	A	C	9.306e^-5	0.869	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	9101968	2L_9101968_SNP [dm3] 2L_9101968_SNP [dm6]	T	A	9.371e^-5	0.869	INTERGENIC
X	8173824	X_8173824_SNP [dm3] X_8279791_SNP [dm6]	T	C	9.525e^-5	0.869	UTR_3_PRIME nAChRalpha3	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
X	6643082	X_6643082_INS [dm3] X_6749049_INS [dm6]	A	AACAGAGA	9.662e^-5	0.869	INTRON CG14439
X	14042378	X_14042378_SNP [dm3] X_14148345_SNP [dm6]	T	G	9.793e^-5	0.869	INTERGENIC
2L	2863927	2L_2863927_SNP [dm3] 2L_2863927_SNP [dm6]	C	T	9.826e^-5	0.869	INTRON CG2991	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21876295	3R_21876295_SNP [dm3] 3R_26050573_SNP [dm6]	T	C	9.968e^-5	0.869	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23652110	3R_23652110_SNP [dm3] 3R_27826388_SNP [dm6]	A	C	9.979e^-5	0.869	INTRON CG34353	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	23652134	3R_23652134_SNP [dm3] 3R_27826412_SNP [dm6]	G	C	9.979e^-5	0.869	INTRON CG34353	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	24442378	3L_24442378_DEL [dm3] 3L_24449278_DEL [dm6]	AA	A	9.985e^-5	0.869	INTERGENIC
3R	20490111	3R_20490111_SNP [dm3] 3R_24664389_SNP [dm6]	G	A	9.999e^-5	0.869	UTR_5_PRIME slo	regulatory region REDfly_CRMs
X	10719310	X_10719310_DEL [dm3] X_10825277_DEL [dm6]	AA	A	1.001e^-4	0.869	DOWNSTREAM CR45624 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11573868	2R_11573868_SNP [dm3] 2R_15686363_SNP [dm6]	C	T	1.010e^-4	0.869	SYNONYMOUS_CODING Ranbp11 UPSTREAM CG30082	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2R	15016160	2R_15016160_SNP [dm3] 2R_19128655_SNP [dm6]	G	A	1.013e^-4	0.869	UPSTREAM botv INTRON CG15117
3L	12147115	3L_12147115_SNP [dm3] 3L_12154015_SNP [dm6]	T	C	1.017e^-4	0.869	SYNONYMOUS_CODING Nrx-IV
3L	7257568	3L_7257568_SNP [dm3] 3L_7264468_SNP [dm6]	G	A	1.021e^-4	0.869	UPSTREAM CG14830 INTERGENIC
3R	7282901	3R_7282901_SNP [dm3] 3R_11457179_SNP [dm6]	T	C	1.033e^-4	0.869	INTRON CG17230 & 1 other
3R	11464740	3R_11464740_SNP [dm3] 3R_15639018_SNP [dm6]	T	A	1.046e^-4	0.869	DOWNSTREAM CG43336 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	11464746	3R_11464746_SNP [dm3] 3R_15639024_SNP [dm6]	T	A	1.046e^-4	0.869	DOWNSTREAM CG43336 INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	19960413	2L_19960413_SNP [dm3] 2L_19960413_SNP [dm6]	C	T	1.051e^-4	0.869	SYNONYMOUS_CODING CG34051 DOWNSTREAM CoIV & 1 other	TF binding site mE1_TFBS_sens
3R	10811112	3R_10811112_SNP [dm3] 3R_14985390_SNP [dm6]	T	C	1.053e^-4	0.869	INTERGENIC
3R	25212391	3R_25212391_SNP [dm3] 3R_29386669_SNP [dm6]	C	T	1.054e^-4	0.869	INTRON Ptp99A	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
2R	20211873	2R_20211873_SNP [dm3] 2R_24324350_SNP [dm6]	G	A	1.056e^-4	0.869	UPSTREAM CR44810 INTERGENIC
X	18314774	X_18314774_SNP [dm3] X_18420741_SNP [dm6]	C	T	1.060e^-4	0.869	INTERGENIC
3L	15483234	3L_15483234_SNP [dm3] 3L_15490134_SNP [dm6]	A	C	1.077e^-4	0.869	INTERGENIC
3L	7105602	3L_7105602_SNP [dm3] 3L_7112502_SNP [dm6]	A	T	1.079e^-4	0.869	INTRON form3
3R	10811113	3R_10811113_SNP [dm3] 3R_14985391_SNP [dm6]	G	A	1.080e^-4	0.869	INTERGENIC
2L	13925733	2L_13925733_SNP [dm3] 2L_13925733_SNP [dm6]	C	A	1.084e^-4	0.869	INTRON Ance-3
2L	6398352	2L_6398352_SNP [dm3] 2L_6398352_SNP [dm6]	G	T	1.086e^-4	0.869	INTRON CG42368
2R	15016146	2R_15016146_SNP [dm3] 2R_19128641_SNP [dm6]	T	A	1.088e^-4	0.869	UPSTREAM botv INTRON CG15117
X	5452712	X_5452712_SNP [dm3] X_5558679_SNP [dm6]	C	A	1.105e^-4	0.869	INTRON Vsx2
3L	16354111	3L_16354111_SNP [dm3] 3L_16361011_SNP [dm6]	T	G	1.109e^-4	0.869	INTRON CG45057
2R	10925628	2R_10925628_SNP [dm3] 2R_15038123_SNP [dm6]	C	T	1.115e^-4	0.869	INTRON hbs
3L	16896018	3L_16896018_SNP [dm3] 3L_16902918_SNP [dm6]	G	A	1.117e^-4	0.869	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo
2L	13696626	2L_13696626_SNP [dm3] 2L_13696626_SNP [dm6]	G	A	1.119e^-4	0.869	INTRON CG31814
3L	8207850	3L_8207850_SNP [dm3] 3L_8214750_SNP [dm6]	T	C	1.123e^-4	0.869	UPSTREAM CG8012 INTERGENIC
3R	19769844	3R_19769844_SNP [dm3] 3R_23944122_SNP [dm6]	C	T	1.130e^-4	0.869	INTRON CG12268	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	11686646	2L_11686646_SNP [dm3] 2L_11686646_SNP [dm6]	A	T	1.137e^-4	0.869	INTERGENIC
2R	15016163	2R_15016163_SNP [dm3] 2R_19128658_SNP [dm6]	T	A	1.139e^-4	0.869	UPSTREAM botv INTRON CG15117
2L	19896738	2L_19896738_SNP [dm3] 2L_19896738_SNP [dm6]	T	A	1.149e^-4	0.869	INTRON sick
3L	2683900	3L_2683900_SNP [dm3] 3L_2683900_SNP [dm6]	G	A	1.150e^-4	0.869	INTRON Fife
2R	17944179	2R_17944179_SNP [dm3] 2R_22056674_SNP [dm6]	G	A	1.153e^-4	0.869	SYNONYMOUS_CODING CG13500	TF binding site mE1_TFBS_cad
2R	16861770	2R_16861770_SNP [dm3] 2R_20974265_SNP [dm6]	T	A	1.158e^-4	0.869	UPSTREAM CG15649 INTERGENIC
3L	20901836	3L_20901836_SNP [dm3] 3L_20908736_SNP [dm6]	A	G	1.159e^-4	0.869	INTERGENIC
3R	7331866	3R_7331866_SNP [dm3] 3R_11506144_SNP [dm6]	C	T	1.160e^-4	0.869	DOWNSTREAM dpr5 INTERGENIC
2L	15090507	2L_15090507_SNP [dm3] 2L_15090507_SNP [dm6]	T	C	1.171e^-4	0.869	INTRON CG15270
3L	7721688	3L_7721688_SNP [dm3] 3L_7728588_SNP [dm6]	A	G	1.175e^-4	0.869	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
3L	413923	3L_413923_SNP [dm3] 3L_413923_SNP [dm6]	A	G	1.175e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	16756187	2L_16756187_SNP [dm3] 2L_16756187_SNP [dm6]	A	C	1.178e^-4	0.869	INTRON yellow-b
X	15135576	X_15135576_SNP [dm3] X_15241543_SNP [dm6]	T	G	1.181e^-4	0.869	INTERGENIC
X	5120460	X_5120460_SNP [dm3] X_5226427_SNP [dm6]	A	G	1.181e^-4	0.869	INTRON CG15465 & 1 other
3R	2230509	3R_2230509_SNP [dm3] 3R_6404787_SNP [dm6]	T	C	1.190e^-4	0.869	INTRON Dmtn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22778961	3R_22778961_SNP [dm3] 3R_26953239_SNP [dm6]	G	A	1.192e^-4	0.869	UTR_5_PRIME CG6330 INTRON CG6330	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	5963561	3R_5963561_SNP [dm3] 3R_10137839_SNP [dm6]	T	C	1.192e^-4	0.869	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	10691485	3L_10691485_SNP [dm3] 3L_10698385_SNP [dm6]	T	G	1.198e^-4	0.869	INTERGENIC
3L	14541160	3L_14541160_SNP [dm3] 3L_14548060_SNP [dm6]	T	C	1.206e^-4	0.869	INTRON CG9238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14388889	3L_14388889_SNP [dm3] 3L_14395789_SNP [dm6]	G	A	1.220e^-4	0.869	INTERGENIC
3L	3893005	3L_3893005_SNP [dm3] 3L_3893005_SNP [dm6]	C	T	1.224e^-4	0.869	DOWNSTREAM snRNA:U11 INTRON Fie
3L	16336502	3L_16336502_SNP [dm3] 3L_16343402_SNP [dm6]	C	A	1.228e^-4	0.869	SYNONYMOUS_CODING CG4998 INTRON CG4998	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	19941325	2L_19941325_SNP [dm3] 2L_19941325_SNP [dm6]	C	T	1.228e^-4	0.869	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2L	4512885	2L_4512885_SNP [dm3] 2L_4512885_SNP [dm6]	C	T	1.230e^-4	0.869	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5742562	X_5742562_DEL [dm3] X_5848529_DEL [dm6]	GGCCAGTGGCCAGTG...	G	1.232e^-4	0.869	INTERGENIC
2R	16864005	2R_16864005_SNP [dm3] 2R_20976500_SNP [dm6]	A	T	1.238e^-4	0.869	UPSTREAM CG9344 INTRON CG34115	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	8137678	2R_8137678_SNP [dm3] 2R_12250173_SNP [dm6]	T	C	1.238e^-4	0.869	INTERGENIC
3L	2171657	3L_2171657_INS [dm3] 3L_2171657_INS [dm6]	A	AC	1.240e^-4	0.869	UPSTREAM CG5704 EXON CR15821
2R	11648030	2R_11648030_SNP [dm3] 2R_15760525_SNP [dm6]	A	T	1.242e^-4	0.869	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	1.250e^-4	0.869	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	21991489	3R_21991489_SNP [dm3] 3R_26165767_SNP [dm6]	A	T	1.254e^-4	0.869	INTERGENIC
3L	15483232	3L_15483232_SNP [dm3] 3L_15490132_SNP [dm6]	A	T	1.254e^-4	0.869	INTERGENIC
2R	16866821	2R_16866821_SNP [dm3] 2R_20979316_SNP [dm6]	G	T	1.258e^-4	0.869	UTR_5_PRIME CG9313 UPSTREAM CG9313 & 1 other
2L	11849740	2L_11849740_SNP [dm3] 2L_11849740_SNP [dm6]	A	G	1.264e^-4	0.869	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
3R	24397623	3R_24397623_SNP [dm3] 3R_28571901_SNP [dm6]	T	C	1.269e^-4	0.869	INTERGENIC	regulatory region REDfly_CRMs
3L	23838988	3L_23838988_SNP [dm3] 3L_23845888_SNP [dm6]	T	A	1.274e^-4	0.869	INTRON CG40470
X	1196886	X_1196886_SNP [dm3] X_1302853_SNP [dm6]	T	C	1.283e^-4	0.869	INTRON DAAM	TF binding site mE1_TFBS_chinmo
X	21063578	X_21063578_SNP [dm3] X_21192551_SNP [dm6]	G	A	1.289e^-4	0.869	UPSTREAM CG14579 INTERGENIC
2L	4364449	2L_4364449_SNP [dm3] 2L_4364449_SNP [dm6]	T	A	1.289e^-4	0.869	UPSTREAM CR45363 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16051314	X_16051314_SNP [dm3] X_16157281_SNP [dm6]	C	T	1.292e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20924804	3L_20924804_SNP [dm3] 3L_20931704_SNP [dm6]	T	C	1.293e^-4	0.869	INTRON fng	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5454328	2L_5454328_SNP [dm3] 2L_5454328_SNP [dm6]	A	T	1.296e^-4	0.869	INTERGENIC
2L	18863618	2L_18863618_SNP [dm3] 2L_18863618_SNP [dm6]	A	G	1.306e^-4	0.869	INTRON tup
2L	9428316	2L_9428316_SNP [dm3] 2L_9428316_SNP [dm6]	A	C	1.314e^-4	0.869	SYNONYMOUS_CODING CG42847 DOWNSTREAM FucTB & 1 other
3R	9773934	3R_9773934_SNP [dm3] 3R_13948212_SNP [dm6]	G	A	1.314e^-4	0.869	UPSTREAM CG31517 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5454279	2L_5454279_SNP [dm3] 2L_5454279_SNP [dm6]	T	G	1.316e^-4	0.869	INTERGENIC
3L	6899768	3L_6899768_SNP [dm3] 3L_6906668_SNP [dm6]	A	T	1.323e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14679644	2L_14679644_SNP [dm3] 2L_14679644_SNP [dm6]	A	C	1.336e^-4	0.869	INTRON osp
2L	4142228	2L_4142228_SNP [dm3] 2L_4142228_SNP [dm6]	C	T	1.338e^-4	0.869	INTERGENIC
3R	10122626	3R_10122626_SNP [dm3] 3R_14296904_SNP [dm6]	G	A	1.339e^-4	0.869	INTRON CG12207
3R	10122629	3R_10122629_SNP [dm3] 3R_14296907_SNP [dm6]	T	C	1.339e^-4	0.869	INTRON CG12207
2R	11571818	2R_11571818_SNP [dm3] 2R_15684313_SNP [dm6]	C	T	1.343e^-4	0.869	SYNONYMOUS_CODING Ranbp11 DOWNSTREAM CG30082 EXON CR43429	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19127138	2R_19127138_SNP [dm3] 2R_23239615_SNP [dm6]	A	G	1.344e^-4	0.869	INTERGENIC
3R	8480553	3R_8480553_SNP [dm3] 3R_12654831_SNP [dm6]	T	C	1.344e^-4	0.869	UTR_5_PRIME CG6225 INTRON CG6225	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20489370	3R_20489370_SNP [dm3] 3R_24663648_SNP [dm6]	G	T	1.346e^-4	0.869	INTRON slo	regulatory region REDfly_CRMs
2L	9427038	2L_9427038_SNP [dm3] 2L_9427038_SNP [dm6]	G	C	1.355e^-4	0.869	NON_SYNONYMOUS_CODING Fbp2 UPSTREAM CG42847 DOWNSTREAM Mco1
2L	9427154	2L_9427154_SNP [dm3] 2L_9427154_SNP [dm6]	G	A	1.355e^-4	0.869	NON_SYNONYMOUS_CODING Fbp2 UPSTREAM CG42847 DOWNSTREAM Mco1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9427486	2L_9427486_SNP [dm3] 2L_9427486_SNP [dm6]	C	T	1.355e^-4	0.869	SYNONYMOUS_CODING Fbp2 UPSTREAM CG42847
2L	9428810	2L_9428810_SNP [dm3] 2L_9428810_SNP [dm6]	T	G	1.355e^-4	0.869	UTR_3_PRIME FucTB DOWNSTREAM Fbp2 & 1 other
2L	9430958	2L_9430958_SNP [dm3] 2L_9430958_SNP [dm6]	A	T	1.355e^-4	0.869	UTR_5_PRIME FucTB UPSTREAM FucTB & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4512888	2L_4512888_SNP [dm3] 2L_4512888_SNP [dm6]	G	A	1.356e^-4	0.869	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7601899	2R_7601899_INS [dm3] 2R_11714394_INS [dm6]	C	ATGGTA	1.360e^-4	0.869	INTRON pyr
3L	8582618	3L_8582618_SNP [dm3] 3L_8589518_SNP [dm6]	T	C	1.364e^-4	0.869	UPSTREAM CG43078 INTRON CG43078
3R	16196776	3R_16196776_SNP [dm3] 3R_20371054_SNP [dm6]	C	A	1.365e^-4	0.869	INTERGENIC
2R	12267152	2R_12267152_SNP [dm3] 2R_16379647_SNP [dm6]	T	A	1.376e^-4	0.869	UPSTREAM CG43187 EXON CR45316 & 1 other
2L	8448676	2L_8448676_SNP [dm3] 2L_8448676_SNP [dm6]	G	T	1.379e^-4	0.869	SYNONYMOUS_CODING U26
3L	20821277	3L_20821277_SNP [dm3] 3L_20828177_SNP [dm6]	C	T	1.382e^-4	0.869	UTR_5_PRIME Pka-R1 UPSTREAM Pka-R1 INTRON Pka-R1
3R	6253280	3R_6253280_SNP [dm3] 3R_10427558_SNP [dm6]	T	A	1.383e^-4	0.869	INTERGENIC
2L	9430078	2L_9430078_SNP [dm3] 2L_9430078_SNP [dm6]	G	A	1.385e^-4	0.869	NON_SYNONYMOUS_CODING FucTB UPSTREAM FucTB	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	2242183	3R_2242183_SNP [dm3] 3R_6416461_SNP [dm6]	G	C	1.395e^-4	0.869	INTRON gpp
3R	3720934	3R_3720934_SNP [dm3] 3R_7895212_SNP [dm6]	C	A	1.396e^-4	0.869	UPSTREAM wtrw INTRON mRpS9 & 1 other
2R	6951579	2R_6951579_SNP [dm3] 2R_11064074_SNP [dm6]	A	G	1.400e^-4	0.869	INTRON luna	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	3692346	2R_3692346_SNP [dm3] 2R_7804841_SNP [dm6]	G	A	1.412e^-4	0.869	START_GAINED Nop17l UTR_5_PRIME Nop17l	TF binding site mE1_TFBS_cad
3L	712423	3L_712423_SNP [dm3] 3L_712423_SNP [dm6]	G	C	1.420e^-4	0.869	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	4816080	2L_4816080_SNP [dm3] 2L_4816080_SNP [dm6]	A	C	1.433e^-4	0.869	SYNONYMOUS_CODING CG3225 DOWNSTREAM CG15629	TF binding site mE1_TFBS_inv
3R	21344893	3R_21344893_SNP [dm3] 3R_25519171_SNP [dm6]	T	A	1.434e^-4	0.869	INTRON msi
2L	9430549	2L_9430549_SNP [dm3] 2L_9430549_SNP [dm6]	A	C	1.434e^-4	0.869	UPSTREAM FucTB & 1 other INTRON FucTB
3L	12162889	3L_12162889_SNP [dm3] 3L_12169789_SNP [dm6]	T	C	1.451e^-4	0.869	INTRON Rh7
3L	20187404	3L_20187404_SNP [dm3] 3L_20194304_SNP [dm6]	A	G	1.455e^-4	0.869	INTRON CG42674
2L	20991674	2L_20991674_SNP [dm3] 2L_20991674_SNP [dm6]	C	A	1.456e^-4	0.869	INTRON CG42238
2L	1860931	2L_1860931_SNP [dm3] 2L_1860931_SNP [dm6]	G	T	1.456e^-4	0.869	INTRON CG31663
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	1.461e^-4	0.869	EXON CR44950
2L	19890129	2L_19890129_SNP [dm3] 2L_19890129_SNP [dm6]	G	A	1.461e^-4	0.869	DOWNSTREAM CG10481 INTRON sick
2R	13242811	2R_13242811_SNP [dm3] 2R_17355306_SNP [dm6]	T	A	1.462e^-4	0.869	INTRON mbl
3L	19472074	3L_19472074_SNP [dm3] 3L_19478974_SNP [dm6]	G	A	1.465e^-4	0.869	UPSTREAM CR32207 DOWNSTREAM CR42842 INTERGENIC
X	14042362	X_14042362_SNP [dm3] X_14148329_SNP [dm6]	A	G	1.473e^-4	0.869	INTERGENIC
3R	5847134	3R_5847134_SNP [dm3] 3R_10021412_SNP [dm6]	A	T	1.473e^-4	0.869	START_GAINED Mical UTR_5_PRIME Mical INTRON Mical	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16531687	3L_16531687_DEL [dm3] 3L_16538587_DEL [dm6]	TT	T	1.474e^-4	0.869	INTRON CG43373
2R	6873237	2R_6873237_SNP [dm3] 2R_10985732_SNP [dm6]	C	A	1.475e^-4	0.869	INTRON luna
3L	14565106	3L_14565106_DEL [dm3] 3L_14572006_DEL [dm6]	TT	T	1.478e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	4864390	3R_4864390_SNP [dm3] 3R_9038668_SNP [dm6]	T	C	1.487e^-4	0.869	UPSTREAM hyx INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	15135579	X_15135579_DEL [dm3] X_15241546_DEL [dm6]	ATA	A	1.500e^-4	0.869	INTERGENIC
3R	24427748	3R_24427748_SNP [dm3] 3R_28602026_SNP [dm6]	A	T	1.501e^-4	0.869	UPSTREAM snoRNA:Psi28S-3405c & 2 others DOWNSTREAM snoRNA:Psi28S-3405a & 2 others INTRON Hrb98DE
X	12900896	X_12900896_SNP [dm3] X_13006863_SNP [dm6]	G	T	1.509e^-4	0.869	INTRON rad	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22191164	3L_22191164_SNP [dm3] 3L_22198064_SNP [dm6]	G	A	1.522e^-4	0.869	INTRON olf413
3R	25760016	3R_25760016_SNP [dm3] 3R_29934294_SNP [dm6]	A	C	1.523e^-4	0.869	NON_SYNONYMOUS_CODING CG42558 UTR_3_PRIME CG42557 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad
2L	21866518	2L_21866518_SNP [dm3] 2L_21866518_SNP [dm6]	A	G	1.534e^-4	0.869	UPSTREAM CR44917 & 1 other DOWNSTREAM CR44919 INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19890116	2L_19890116_SNP [dm3] 2L_19890116_SNP [dm6]	T	A	1.538e^-4	0.869	DOWNSTREAM CG10481 INTRON sick
3R	12383449	3R_12383449_SNP [dm3] 3R_16557727_SNP [dm6]	T	C	1.544e^-4	0.869	INTRON CG42342
X	21946768	X_21946768_SNP [dm3] X_22544932_SNP [dm6]	T	C	1.550e^-4	0.869	UPSTREAM CG17599 INTERGENIC
3R	6105689	3R_6105689_SNP [dm3] 3R_10279967_SNP [dm6]	G	A	1.557e^-4	0.869	INTRON CG43143
X	6643083	X_6643083_INS [dm3] X_6749050_INS [dm6]	T	TCAGAGAT	1.562e^-4	0.869	INTRON CG14439
2L	4147795	2L_4147795_SNP [dm3] 2L_4147795_SNP [dm6]	G	C	1.574e^-4	0.869	INTERGENIC
2L	1675714	2L_1675714_SNP [dm3] 2L_1675714_SNP [dm6]	T	A	1.576e^-4	0.869	INTRON chinmo
2L	1675720	2L_1675720_SNP [dm3] 2L_1675720_SNP [dm6]	C	G	1.576e^-4	0.869	INTRON chinmo
X	2790133	X_2790133_SNP [dm3] X_2896100_SNP [dm6]	C	T	1.579e^-4	0.869	INTRON kirre
2L	16756186	2L_16756186_SNP [dm3] 2L_16756186_SNP [dm6]	A	T	1.584e^-4	0.869	INTRON yellow-b
3L	3090995	3L_3090995_SNP [dm3] 3L_3090995_SNP [dm6]	C	T	1.589e^-4	0.869	UTR_3_PRIME Cht7 DOWNSTREAM CG11486 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	11299674	3L_11299674_SNP [dm3] 3L_11306574_SNP [dm6]	A	T	1.590e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14057292	3L_14057292_SNP [dm3] 3L_14064192_SNP [dm6]	C	T	1.600e^-4	0.869	INTRON CG32138	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	2867868	3R_2867868_SNP [dm3] 3R_7042146_SNP [dm6]	G	A	1.602e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14162492	X_14162492_SNP [dm3] X_14268459_SNP [dm6]	C	T	1.603e^-4	0.869	SYNONYMOUS_CODING na	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4364464	2L_4364464_SNP [dm3] 2L_4364464_SNP [dm6]	C	G	1.606e^-4	0.869	UPSTREAM CR45363 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	22439138	3L_22439138_SNP [dm3] 3L_22446038_SNP [dm6]	G	A	1.617e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	17678420	2R_17678420_SNP [dm3] 2R_21790915_SNP [dm6]	A	G	1.619e^-4	0.869	SYNONYMOUS_CODING lox2
2L	11849737	2L_11849737_SNP [dm3] 2L_11849737_SNP [dm6]	G	A	1.620e^-4	0.869	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
2R	11847956	2R_11847956_SNP [dm3] 2R_15960451_SNP [dm6]	T	A	1.625e^-4	0.869	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7197934	2L_7197934_SNP [dm3] 2L_7197934_SNP [dm6]	A	G	1.626e^-4	0.869	INTRON CG4502
2L	4136103	2L_4136103_SNP [dm3] 2L_4136103_SNP [dm6]	T	G	1.627e^-4	0.869	INTERGENIC
2R	11330161	2R_11330161_SNP [dm3] 2R_15442656_SNP [dm6]	G	A	1.631e^-4	0.869	INTRON CG43729
3R	16196780	3R_16196780_SNP [dm3] 3R_20371058_SNP [dm6]	G	A	1.632e^-4	0.869	INTERGENIC
3L	7479975	3L_7479975_SNP [dm3] 3L_7486875_SNP [dm6]	T	C	1.635e^-4	0.869	SYNONYMOUS_CODING mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15483312	3L_15483312_SNP [dm3] 3L_15490212_SNP [dm6]	A	G	1.635e^-4	0.869	INTERGENIC
2R	11570361	2R_11570361_SNP [dm3] 2R_15682856_SNP [dm6]	G	A	1.641e^-4	0.869	NON_SYNONYMOUS_CODING Ranbp11 DOWNSTREAM CG30091 EXON CR43429	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	19522029	2L_19522029_SNP [dm3] 2L_19522029_SNP [dm6]	C	T	1.644e^-4	0.869	SYNONYMOUS_CODING CG10132	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3290070	2L_3290070_SNP [dm3] 2L_3290070_SNP [dm6]	T	G	1.655e^-4	0.869	INTERGENIC
2R	11567861	2R_11567861_SNP [dm3] 2R_15680356_SNP [dm6]	C	A	1.658e^-4	0.869	UPSTREAM CG30091 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	6253304	3R_6253304_SNP [dm3] 3R_10427582_SNP [dm6]	C	A	1.664e^-4	0.869	INTERGENIC
X	14769207	X_14769207_SNP [dm3] X_14875174_SNP [dm6]	A	C	1.681e^-4	0.869	DOWNSTREAM CG45065 & 1 other INTRON Flo2
2R	11849772	2R_11849772_SNP [dm3] 2R_15962267_SNP [dm6]	G	A	1.682e^-4	0.869	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4737892	3L_4737892_SNP [dm3] 3L_4737892_SNP [dm6]	T	C	1.682e^-4	0.869	INTRON RhoGEF64C
3L	7257559	3L_7257559_SNP [dm3] 3L_7264459_SNP [dm6]	G	A	1.684e^-4	0.869	UPSTREAM CG14830 INTERGENIC
3L	2894083	3L_2894083_DEL [dm3] 3L_2894083_DEL [dm6]	TT	G	1.701e^-4	0.869	UPSTREAM Shab INTERGENIC
3L	8582894	3L_8582894_SNP [dm3] 3L_8589794_SNP [dm6]	G	C	1.711e^-4	0.869	UPSTREAM CG43078 INTRON CG43078
3L	11168340	3L_11168340_SNP [dm3] 3L_11175240_SNP [dm6]	C	T	1.715e^-4	0.869	INTRON CG14142	TF binding site mE1_TFBS_cad
2L	18872053	2L_18872053_SNP [dm3] 2L_18872053_SNP [dm6]	C	A	1.724e^-4	0.869	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	412023	3L_412023_SNP [dm3] 3L_412023_SNP [dm6]	G	T	1.732e^-4	0.869	INTERGENIC
3R	18478605	3R_18478605_SNP [dm3] 3R_22652883_SNP [dm6]	T	A	1.737e^-4	0.869	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20273581	3R_20273581_SNP [dm3] 3R_24447859_SNP [dm6]	C	T	1.738e^-4	0.869	INTRON nAChRalpha1
X	2933663	X_2933663_SNP [dm3] X_3039630_SNP [dm6]	C	T	1.742e^-4	0.869	INTRON kirre
3L	16202346	3L_16202346_SNP [dm3] 3L_16209246_SNP [dm6]	C	T	1.748e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_cad
2L	4145075	2L_4145075_SNP [dm3] 2L_4145075_SNP [dm6]	T	A	1.758e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18449479	3R_18449479_SNP [dm3] 3R_22623757_SNP [dm6]	C	G	1.759e^-4	0.869	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_h mE1_TFBS_HSA
3L	13870686	3L_13870686_SNP [dm3] 3L_13877586_SNP [dm6]	T	G	1.761e^-4	0.869	INTRON dysc
2L	8448106	2L_8448106_SNP [dm3] 2L_8448106_SNP [dm6]	G	A	1.763e^-4	0.869	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11576437	2R_11576437_SNP [dm3] 2R_15688932_SNP [dm6]	T	C	1.764e^-4	0.869	NON_SYNONYMOUS_CODING Cep89 UPSTREAM CG30090	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16289150	2R_16289150_SNP [dm3] 2R_20401645_SNP [dm6]	G	A	1.769e^-4	0.869	INTERGENIC
2L	18848488	2L_18848488_SNP [dm3] 2L_18848488_SNP [dm6]	A	C	1.771e^-4	0.869	INTRON CG17321
3L	6316406	3L_6316406_SNP [dm3] 3L_6323306_SNP [dm6]	C	T	1.773e^-4	0.869	INTERGENIC
2R	19564919	2R_19564919_SNP [dm3] 2R_23677396_SNP [dm6]	C	G	1.775e^-4	0.869	INTRON Pde8	TF binding site mE1_TFBS_cad
3L	7257545	3L_7257545_SNP [dm3] 3L_7264445_SNP [dm6]	T	A	1.779e^-4	0.869	UPSTREAM CG14830 INTERGENIC
3R	12383420	3R_12383420_SNP [dm3] 3R_16557698_SNP [dm6]	G	C	1.781e^-4	0.869	INTRON CG42342
X	4093930	X_4093930_SNP [dm3] X_4199897_SNP [dm6]	T	C	1.784e^-4	0.869	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	10852647	3L_10852647_SNP [dm3] 3L_10859547_SNP [dm6]	T	A	1.784e^-4	0.869	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_kn
X	16443966	X_16443966_SNP [dm3] X_16549933_SNP [dm6]	T	C	1.798e^-4	0.869	INTRON Arp2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	20187373	3L_20187373_SNP [dm3] 3L_20194273_SNP [dm6]	G	T	1.804e^-4	0.869	INTRON CG42674
2R	19024800	2R_19024800_SNP [dm3] 2R_23137277_SNP [dm6]	G	A	1.809e^-4	0.869	INTERGENIC
3L	18998179	3L_18998179_SNP [dm3] 3L_19005079_SNP [dm6]	G	A	1.815e^-4	0.869	SYNONYMOUS_CODING nkd UTR_3_PRIME nkd	TF binding site mE1_TFBS_chinmo
3R	16035807	3R_16035807_SNP [dm3] 3R_20210085_SNP [dm6]	T	C	1.816e^-4	0.869	UPSTREAM CG17199 INTRON Nlg4
3R	16196775	3R_16196775_SNP [dm3] 3R_20371053_SNP [dm6]	A	T	1.816e^-4	0.869	INTERGENIC
3L	18641597	3L_18641597_DEL [dm3] 3L_18648497_DEL [dm6]	AACACA	GGGTT	1.817e^-4	0.869	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2669602	2L_2669602_SNP [dm3] 2L_2669602_SNP [dm6]	G	T	1.822e^-4	0.869	UPSTREAM Gr23a INTERGENIC
3R	25753283	3R_25753283_SNP [dm3] 3R_29927561_SNP [dm6]	T	C	1.823e^-4	0.869	UTR_5_PRIME CG15522 INTRON CG15522
3R	2867864	3R_2867864_SNP [dm3] 3R_7042142_SNP [dm6]	A	C	1.826e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	21921535	2L_21921535_SNP [dm3] 2L_21921535_SNP [dm6]	T	C	1.826e^-4	0.869	INTERGENIC
2L	2279895	2L_2279895_SNP [dm3] 2L_2279895_SNP [dm6]	G	A	1.828e^-4	0.869	UPSTREAM CR43753 INTERGENIC
3L	16202260	3L_16202260_SNP [dm3] 3L_16209160_SNP [dm6]	A	C	1.841e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14184655	2R_14184655_SNP [dm3] 2R_18297150_SNP [dm6]	G	A	1.853e^-4	0.869	UPSTREAM CG18539 DOWNSTREAM CG18537 INTRON sbb & 1 other
2R	18010243	2R_18010243_SNP [dm3] 2R_22122738_SNP [dm6]	G	A	1.856e^-4	0.869	UPSTREAM mei-S332 & 1 other INTRON mei-S332	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13026679	X_13026679_SNP [dm3] X_13132646_SNP [dm6]	T	G	1.864e^-4	0.869	INTRON MFS10 & 1 other
3R	21990600	3R_21990600_SNP [dm3] 3R_26164878_SNP [dm6]	G	T	1.867e^-4	0.869	INTERGENIC
3L	4737895	3L_4737895_SNP [dm3] 3L_4737895_SNP [dm6]	A	G	1.869e^-4	0.869	INTRON RhoGEF64C
2L	6505574	2L_6505574_SNP [dm3] 2L_6505574_SNP [dm6]	A	G	1.871e^-4	0.869	INTRON CG31637
2L	1677679	2L_1677679_SNP [dm3] 2L_1677679_SNP [dm6]	G	A	1.872e^-4	0.869	INTRON chinmo
3R	17360667	3R_17360667_SNP [dm3] 3R_21534945_SNP [dm6]	G	A	1.876e^-4	0.869	EXON CR44033	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	3409656	2L_3409656_SNP [dm3] 2L_3409656_SNP [dm6]	T	A	1.881e^-4	0.869	UPSTREAM CG8840 INTRON pgant2
3L	16202254	3L_16202254_SNP [dm3] 3L_16209154_SNP [dm6]	C	T	1.886e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_cad
2L	15378351	2L_15378351_SNP [dm3] 2L_15378351_SNP [dm6]	C	T	1.888e^-4	0.869	INTERGENIC
3L	20737672	3L_20737672_SNP [dm3] 3L_20744572_SNP [dm6]	C	G	1.896e^-4	0.869	DOWNSTREAM CG13252 INTERGENIC
2L	19079237	2L_19079237_SNP [dm3] 2L_19079237_SNP [dm6]	C	T	1.899e^-4	0.869	UPSTREAM CG10700 DOWNSTREAM Lim3 INTERGENIC
X	6477081	X_6477081_SNP [dm3] X_6583048_SNP [dm6]	G	T	1.900e^-4	0.869	SYNONYMOUS_CODING CG34417 INTRON CG34417
2R	14341704	2R_14341704_SNP [dm3] 2R_18454199_SNP [dm6]	T	C	1.901e^-4	0.869	SYNONYMOUS_CODING CG17669	TF binding site mE1_TFBS_cad
3R	6105675	3R_6105675_SNP [dm3] 3R_10279953_SNP [dm6]	T	A	1.908e^-4	0.869	INTRON CG43143
3R	4349280	3R_4349280_SNP [dm3] 3R_8523558_SNP [dm6]	T	C	1.909e^-4	0.869	UPSTREAM CG31259 DOWNSTREAM CG31454 INTERGENIC
2R	3264528	2R_3264528_SNP [dm3] 2R_7377023_SNP [dm6]	C	T	1.919e^-4	0.869	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	14157477	X_14157477_SNP [dm3] X_14263444_SNP [dm6]	A	G	1.920e^-4	0.869	SPLICE_SITE_REGION CG1461 INTRON CG1461
3L	15633361	3L_15633361_SNP [dm3] 3L_15640261_SNP [dm6]	G	A	1.921e^-4	0.869	INTRON comm3	TF binding site mE1_TFBS_inv
2R	18933150	2R_18933150_SNP [dm3] 2R_23045627_SNP [dm6]	C	T	1.928e^-4	0.869	UPSTREAM twi INTRON twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	16325160	3L_16325160_SNP [dm3] 3L_16332060_SNP [dm6]	G	A	1.935e^-4	0.869	NON_SYNONYMOUS_CODING retinin DOWNSTREAM CG33061 & 1 other	TF binding site mE1_TFBS_cad
2R	6658026	2R_6658026_SNP [dm3] 2R_10770521_SNP [dm6]	A	G	1.935e^-4	0.869	INTRON CG33144
2R	20316757	2R_20316757_SNP [dm3] 2R_24429234_SNP [dm6]	A	G	1.937e^-4	0.869	UPSTREAM prom DOWNSTREAM CG15873 INTERGENIC
3R	10122627	3R_10122627_SNP [dm3] 3R_14296905_SNP [dm6]	A	T	1.939e^-4	0.869	INTRON CG12207
2R	13156683	2R_13156683_SNP [dm3] 2R_17269178_SNP [dm6]	T	C	1.943e^-4	0.869	INTRON mbl	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run
3L	20888236	3L_20888236_SNP [dm3] 3L_20895136_SNP [dm6]	A	G	1.947e^-4	0.869	INTERGENIC
X	6993925	X_6993925_SNP [dm3] X_7099892_SNP [dm6]	C	A	1.948e^-4	0.869	SYNONYMOUS_CODING CG4615	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16035710	3R_16035710_SNP [dm3] 3R_20209988_SNP [dm6]	C	A	1.962e^-4	0.869	UPSTREAM CG17199 INTRON Nlg4
2R	16422361	2R_16422361_SNP [dm3] 2R_20534856_SNP [dm6]	C	T	1.965e^-4	0.869	SYNONYMOUS_CODING CG18067 DOWNSTREAM CG30154
2R	8862122	2R_8862122_SNP [dm3] 2R_12974617_SNP [dm6]	G	A	1.968e^-4	0.869	INTRON Psc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21278521	X_21278521_SNP [dm3] X_21407494_SNP [dm6]	A	G	1.972e^-4	0.869	INTERGENIC
3L	18533592	3L_18533592_SNP [dm3] 3L_18540492_SNP [dm6]	A	C	1.975e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	712399	3L_712399_SNP [dm3] 3L_712399_SNP [dm6]	A	T	1.977e^-4	0.869	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	10085825	2L_10085825_SNP [dm3] 2L_10085825_SNP [dm6]	C	T	1.978e^-4	0.869	INTRON CG44153
X	10443026	X_10443026_SNP [dm3] X_10548993_SNP [dm6]	C	T	1.988e^-4	0.869	INTRON spri
2R	16923365	2R_16923365_SNP [dm3] 2R_21035860_SNP [dm6]	C	G	2.001e^-4	0.869	INTERGENIC
X	14157661	X_14157661_SNP [dm3] X_14263628_SNP [dm6]	C	T	2.005e^-4	0.869	SYNONYMOUS_CODING CG1461
3L	7726328	3L_7726328_SNP [dm3] 3L_7733228_SNP [dm6]	T	C	2.013e^-4	0.869	DOWNSTREAM Snmp2 INTRON CG32373
X	8173885	X_8173885_SNP [dm3] X_8279852_SNP [dm6]	C	A	2.016e^-4	0.869	UTR_3_PRIME nAChRalpha3	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
X	21160844	X_21160844_SNP [dm3] X_21289817_SNP [dm6]	G	C	2.020e^-4	0.869	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13138620	3R_13138620_SNP [dm3] 3R_17312898_SNP [dm6]	G	A	2.031e^-4	0.869	INTERGENIC
3R	25799122	3R_25799122_SNP [dm3] 3R_29973400_SNP [dm6]	G	C	2.033e^-4	0.869	INTERGENIC
X	8292916	X_8292916_SNP [dm3] X_8398883_SNP [dm6]	C	G	2.034e^-4	0.869	UPSTREAM CG10555 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9501665	2L_9501665_SNP [dm3] 2L_9501665_SNP [dm6]	C	T	2.038e^-4	0.869	INTRON CG33298
X	2690048	X_2690048_SNP [dm3] X_2796015_SNP [dm6]	A	C	2.046e^-4	0.869	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	19317545	2R_19317545_SNP [dm3] 2R_23430022_SNP [dm6]	G	T	2.051e^-4	0.869	INTRON CG9815
2L	18328673	2L_18328673_SNP [dm3] 2L_18328673_SNP [dm6]	G	C	2.063e^-4	0.869	INTRON Fas3
3R	20273584	3R_20273584_SNP [dm3] 3R_24447862_SNP [dm6]	G	C	2.066e^-4	0.869	INTRON nAChRalpha1
2R	19564911	2R_19564911_SNP [dm3] 2R_23677388_SNP [dm6]	T	A	2.069e^-4	0.869	INTRON Pde8	TF binding site mE1_TFBS_cad
2R	13415564	2R_13415564_SNP [dm3] 2R_17528059_SNP [dm6]	G	A	2.079e^-4	0.869	SYNONYMOUS_CODING Patronin
3L	3131764	3L_3131764_SNP [dm3] 3L_3131764_SNP [dm6]	T	C	2.082e^-4	0.869	INTRON CG11537	TF binding site mE1_TFBS_Kr
3R	13105304	3R_13105304_SNP [dm3] 3R_17279582_SNP [dm6]	G	A	2.086e^-4	0.869	INTERGENIC
3L	7473829	3L_7473829_SNP [dm3] 3L_7480729_SNP [dm6]	C	G	2.087e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_inv
3R	7279643	3R_7279643_SNP [dm3] 3R_11453921_SNP [dm6]	C	G	2.094e^-4	0.869	START_GAINED PGRP-LB UTR_5_PRIME PGRP-LB INTRON CG17230 & 1 other	TF binding site mE1_TFBS_chinmo
3R	24831732	3R_24831732_SNP [dm3] 3R_29006010_SNP [dm6]	G	C	2.096e^-4	0.869	INTRON wat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16239657	2L_16239657_SNP [dm3] 2L_16239657_SNP [dm6]	C	T	2.096e^-4	0.869	INTRON CG42817
X	3779608	X_3779608_SNP [dm3] X_3885575_SNP [dm6]	A	G	2.105e^-4	0.869	INTRON CG15239
2L	8447066	2L_8447066_SNP [dm3] 2L_8447066_SNP [dm6]	C	G	2.105e^-4	0.869	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_inv
3L	12097021	3L_12097021_SNP [dm3] 3L_12103921_SNP [dm6]	C	T	2.110e^-4	0.869	INTERGENIC
X	8292927	X_8292927_SNP [dm3] X_8398894_SNP [dm6]	T	C	2.115e^-4	0.869	UPSTREAM CG10555 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14710885	3L_14710885_DEL [dm3] 3L_14717785_DEL [dm6]	GAAAAA	T	2.115e^-4	0.869	INTRON ome
3L	441963	3L_441963_SNP [dm3] 3L_441963_SNP [dm6]	C	T	2.121e^-4	0.869	UPSTREAM klar DOWNSTREAM klar INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
3R	16035576	3R_16035576_DEL [dm3] 3R_20209854_DEL [dm6]	TTAATTCTGCTCAAAAGTTT...	T	2.122e^-4	0.869	UPSTREAM CG17199 INTRON Nlg4
3R	8117798	3R_8117798_SNP [dm3] 3R_12292076_SNP [dm6]	C	T	2.126e^-4	0.869	INTRON svp
3R	24672410	3R_24672410_SNP [dm3] 3R_28846688_SNP [dm6]	C	T	2.127e^-4	0.869	INTRON spg	TF binding site BDTNP1_TFBS_dl
2L	3127602	2L_3127602_SNP [dm3] 2L_3127602_SNP [dm6]	G	A	2.141e^-4	0.869	SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6736540	X_6736540_SNP [dm3] X_6842507_SNP [dm6]	C	T	2.159e^-4	0.869	INTRON CG14435	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4148017	2L_4148017_SNP [dm3] 2L_4148017_SNP [dm6]	T	G	2.161e^-4	0.869	INTERGENIC
3L	2645600	3L_2645600_SNP [dm3] 3L_2645600_SNP [dm6]	A	T	2.164e^-4	0.869	INTRON CG1143	TF binding site mE1_TFBS_cad
2L	10084877	2L_10084877_SNP [dm3] 2L_10084877_SNP [dm6]	G	C	2.170e^-4	0.869	INTRON CG44153
3L	7257564	3L_7257564_SNP [dm3] 3L_7264464_SNP [dm6]	C	T	2.171e^-4	0.869	UPSTREAM CG14830 INTERGENIC
3L	10702270	3L_10702270_SNP [dm3] 3L_10709170_SNP [dm6]	C	A	2.184e^-4	0.869	INTERGENIC
3L	8614101	3L_8614101_SNP [dm3] 3L_8621001_SNP [dm6]	A	T	2.199e^-4	0.869	SYNONYMOUS_CODING S-Lap2
2R	20946369	2R_20946369_SNP [dm3] 2R_25058846_SNP [dm6]	C	T	2.199e^-4	0.869	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3L	20901894	3L_20901894_SNP [dm3] 3L_20908794_SNP [dm6]	C	T	2.202e^-4	0.869	INTERGENIC
2L	19374824	2L_19374824_SNP [dm3] 2L_19374824_SNP [dm6]	G	C	2.208e^-4	0.869	INTERGENIC
3L	20901821	3L_20901821_SNP [dm3] 3L_20908721_SNP [dm6]	T	C	2.217e^-4	0.869	INTERGENIC
3R	20316317	3R_20316317_SNP [dm3] 3R_24490595_SNP [dm6]	T	G	2.219e^-4	0.869	INTRON nAChRalpha2
3R	11131180	3R_11131180_SNP [dm3] 3R_15305458_SNP [dm6]	T	G	2.225e^-4	0.869	SYNONYMOUS_CODING Tm1 DOWNSTREAM Tm1 INTRON Tm1	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2171891	3L_2171891_SNP [dm3] 3L_2171891_SNP [dm6]	G	A	2.245e^-4	0.869	UPSTREAM CG5704 EXON CR15821
2L	19480177	2L_19480177_SNP [dm3] 2L_19480177_SNP [dm6]	A	G	2.245e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	7257565	3L_7257565_SNP [dm3] 3L_7264465_SNP [dm6]	C	T	2.247e^-4	0.869	UPSTREAM CG14830 INTERGENIC
2R	11330066	2R_11330066_SNP [dm3] 2R_15442561_SNP [dm6]	G	T	2.254e^-4	0.869	INTRON CG43729
3R	20232899	3R_20232899_INS [dm3] 3R_24407177_INS [dm6]	C	CCAA	2.254e^-4	0.869	INTRON nAChRalpha1
2L	648426	2L_648426_SNP [dm3] 2L_648426_SNP [dm6]	C	T	2.256e^-4	0.869	INTRON ds
2L	3992991	2L_3992991_SNP [dm3] 2L_3992991_SNP [dm6]	T	G	2.270e^-4	0.869	INTERGENIC
2L	20860404	2L_20860404_SNP [dm3] 2L_20860404_SNP [dm6]	C	T	2.277e^-4	0.869	INTRON CG9336
2L	19970109	2L_19970109_SNP [dm3] 2L_19970109_SNP [dm6]	C	T	2.286e^-4	0.869	SYNONYMOUS_CODING CG43861 UTR_3_PRIME CG43861	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5742546	X_5742546_SNP [dm3] X_5848513_SNP [dm6]	T	C	2.291e^-4	0.869	INTERGENIC
3L	13557427	3L_13557427_INS [dm3] 3L_13564327_INS [dm6]	G	TA	2.293e^-4	0.869	INTRON bru-3
3L	13557430	3L_13557430_DEL [dm3] 3L_13564330_DEL [dm6]	GTTT	G	2.293e^-4	0.869	INTRON bru-3
3L	16331071	3L_16331071_SNP [dm3] 3L_16337971_SNP [dm6]	C	A	2.303e^-4	0.869	INTERGENIC
2L	3439022	2L_3439022_SNP [dm3] 2L_3439022_SNP [dm6]	A	G	2.315e^-4	0.869	INTERGENIC
3R	22519992	3R_22519992_SNP [dm3] 3R_26694270_SNP [dm6]	A	G	2.316e^-4	0.869	UPSTREAM TwdlQ INTERGENIC
X	2876784	X_2876784_DEL [dm3] X_2982751_DEL [dm6]	TG	C	2.320e^-4	0.869	INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	14182626	X_14182626_SNP [dm3] X_14288593_SNP [dm6]	G	A	2.325e^-4	0.869	DOWNSTREAM Muc12Ea INTRON CG9400
3L	4545922	3L_4545922_SNP [dm3] 3L_4545922_SNP [dm6]	G	A	2.325e^-4	0.869	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	357751	2L_357751_SNP [dm3] 2L_357751_SNP [dm6]	G	C	2.325e^-4	0.869	SPLICE_SITE_REGION Ent1 UTR_5_PRIME Ent1 DOWNSTREAM CR45367 INTRON Ent1 EXON CR45366	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	3126404	2L_3126404_SNP [dm3] 2L_3126404_SNP [dm6]	G	A	2.335e^-4	0.869	NON_SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	16861864	2R_16861864_SNP [dm3] 2R_20974359_SNP [dm6]	G	C	2.347e^-4	0.869	UPSTREAM CG15649 INTERGENIC
3R	26687787	3R_26687787_SNP [dm3] 3R_30862065_SNP [dm6]	C	T	2.353e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	16824644	3L_16824644_SNP [dm3] 3L_16831544_SNP [dm6]	A	G	2.355e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_inv
2R	18004262	2R_18004262_SNP [dm3] 2R_22116757_SNP [dm6]	G	T	2.356e^-4	0.869	UPSTREAM Vrp1 DOWNSTREAM CG30281 INTRON Vrp1
2L	9487588	2L_9487588_SNP [dm3] 2L_9487588_SNP [dm6]	A	G	2.368e^-4	0.869	INTERGENIC
2L	3437594	2L_3437594_SNP [dm3] 2L_3437594_SNP [dm6]	A	T	2.373e^-4	0.869	INTERGENIC
3R	1931150	3R_1931150_INS [dm3] 3R_6105428_INS [dm6]	G	GCAATTACATCCAGCTCACA...	2.376e^-4	0.869	UPSTREAM CR44929 INTERGENIC	regulatory region REDfly_CRMs
X	6439088	X_6439088_SNP [dm3] X_6545055_SNP [dm6]	G	A	2.378e^-4	0.869	INTRON CG34417
3L	12146645	3L_12146645_SNP [dm3] 3L_12153545_SNP [dm6]	T	C	2.378e^-4	0.869	SYNONYMOUS_CODING Nrx-IV
3R	7278942	3R_7278942_SNP [dm3] 3R_11453220_SNP [dm6]	A	G	2.379e^-4	0.869	SYNONYMOUS_CODING PGRP-LB INTRON CG17230	TF binding site mE1_TFBS_chinmo
3R	20301156	3R_20301156_SNP [dm3] 3R_24475434_SNP [dm6]	A	T	2.388e^-4	0.869	INTERGENIC
2R	6670733	2R_6670733_SNP [dm3] 2R_10783228_SNP [dm6]	T	C	2.389e^-4	0.869	UPSTREAM CG33144 INTRON CG33144 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	11982389	3R_11982389_DEL [dm3] 3R_16156667_DEL [dm6]	GATGAATG	G	2.399e^-4	0.869	INTRON CG6006
3R	4932590	3R_4932590_SNP [dm3] 3R_9106868_SNP [dm6]	C	T	2.402e^-4	0.869	INTRON pum
3R	21341350	3R_21341350_SNP [dm3] 3R_25515628_SNP [dm6]	G	T	2.408e^-4	0.869	UPSTREAM msi INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15606962	3L_15606962_SNP [dm3] 3L_15613862_SNP [dm6]	G	T	2.409e^-4	0.869	SYNONYMOUS_CODING comm3
2L	1542729	2L_1542729_SNP [dm3] 2L_1542729_SNP [dm6]	C	T	2.412e^-4	0.869	INTERGENIC
3L	15488893	3L_15488893_DEL [dm3] 3L_15495793_DEL [dm6]	TCT	T	2.415e^-4	0.869	UPSTREAM CG12355 & 1 other INTERGENIC
2L	9443434	2L_9443434_SNP [dm3] 2L_9443434_SNP [dm6]	C	T	2.415e^-4	0.869	INTRON numb
3L	17618384	3L_17618384_SNP [dm3] 3L_17625284_SNP [dm6]	G	A	2.416e^-4	0.869	INTRON CG7510	TF binding site mE1_TFBS_inv
2L	10525649	2L_10525649_SNP [dm3] 2L_10525649_SNP [dm6]	T	C	2.430e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4839544	2L_4839544_SNP [dm3] 2L_4839544_SNP [dm6]	G	C	2.431e^-4	0.869	INTRON CG12194	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	16196724	3R_16196724_SNP [dm3] 3R_20371002_SNP [dm6]	C	G	2.440e^-4	0.869	INTERGENIC
X	20936762	X_20936762_SNP [dm3] X_21065735_SNP [dm6]	G	A	2.442e^-4	0.869	INTRON bves & 1 other
2L	22306203	2L_22306203_SNP [dm3] 2L_22306203_SNP [dm6]	T	C	2.450e^-4	0.869	INTERGENIC
3R	10122680	3R_10122680_SNP [dm3] 3R_14296958_SNP [dm6]	T	A	2.459e^-4	0.869	INTRON CG12207
3L	743993	3L_743993_SNP [dm3] 3L_743993_SNP [dm6]	T	C	2.463e^-4	0.869	UPSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15767529	3R_15767529_DEL [dm3] 3R_19941807_DEL [dm6]	TAT	T	2.466e^-4	0.869	INTRON Hs6st
3L	10693458	3L_10693458_SNP [dm3] 3L_10700358_SNP [dm6]	A	C	2.469e^-4	0.869	INTERGENIC
3R	15767430	3R_15767430_SNP [dm3] 3R_19941708_SNP [dm6]	G	C	2.471e^-4	0.869	INTRON Hs6st
3R	9817342	3R_9817342_INS [dm3] 3R_13991620_INS [dm6]	C	CCATG	2.476e^-4	0.869	INTRON rdx
3R	9817346	3R_9817346_INS [dm3] 3R_13991624_INS [dm6]	T	TGATT	2.476e^-4	0.869	INTRON rdx
2L	19912719	2L_19912719_SNP [dm3] 2L_19912719_SNP [dm6]	T	A	2.480e^-4	0.869	UPSTREAM CR43097 & 1 other DOWNSTREAM Victoria INTRON sick
2L	11849869	2L_11849869_DEL [dm3] 2L_11849869_DEL [dm6]	TTTTA	G	2.481e^-4	0.869	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
2L	5758264	2L_5758264_SNP [dm3] 2L_5758264_SNP [dm6]	A	C	2.483e^-4	0.869	INTRON CG11030	TF binding site mE1_TFBS_cad
3R	4362491	3R_4362491_SNP [dm3] 3R_8536769_SNP [dm6]	A	G	2.485e^-4	0.869	INTERGENIC
3L	18641613	3L_18641613_SNP [dm3] 3L_18648513_SNP [dm6]	A	T	2.491e^-4	0.869	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14449242	2R_14449242_SNP [dm3] 2R_18561737_SNP [dm6]	C	G	2.493e^-4	0.869	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	386295	2L_386295_SNP [dm3] 2L_386295_SNP [dm6]	C	A	2.495e^-4	0.869	INTRON al
3L	7257534	3L_7257534_SNP [dm3] 3L_7264434_SNP [dm6]	T	A	2.497e^-4	0.869	UPSTREAM CG14830 INTERGENIC
3L	7721263	3L_7721263_SNP [dm3] 3L_7728163_SNP [dm6]	T	C	2.513e^-4	0.869	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25752385	3R_25752385_SNP [dm3] 3R_29926663_SNP [dm6]	T	G	2.515e^-4	0.869	UPSTREAM Jon99Ci & 1 other INTERGENIC
3L	1347788	3L_1347788_SNP [dm3] 3L_1347788_SNP [dm6]	C	T	2.532e^-4	0.869	INTRON Ptp61F	TF binding site BDTNP1_TFBS_prd
3R	12745588	3R_12745588_SNP [dm3] 3R_16919866_SNP [dm6]	A	G	2.535e^-4	0.869	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	7355601	2L_7355601_SNP [dm3] 2L_7355601_SNP [dm6]	G	A	2.537e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	14560642	3L_14560642_SNP [dm3] 3L_14567542_SNP [dm6]	C	A	2.553e^-4	0.869	INTRON CG42758
2L	8704103	2L_8704103_SNP [dm3] 2L_8704103_SNP [dm6]	C	T	2.564e^-4	0.869	INTRON Hnf4 EXON CR44992
3L	4545925	3L_4545925_SNP [dm3] 3L_4545925_SNP [dm6]	C	A	2.568e^-4	0.869	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8450997	2L_8450997_SNP [dm3] 2L_8450997_SNP [dm6]	T	A	2.572e^-4	0.869	UTR_5_PRIME fu12
3L	22312914	3L_22312914_SNP [dm3] 3L_22319814_SNP [dm6]	C	A	2.582e^-4	0.869	INTRON Ten-m	TF binding site mE1_TFBS_inv
2L	17385513	2L_17385513_SNP [dm3] 2L_17385513_SNP [dm6]	C	A	2.587e^-4	0.869	UPSTREAM CLIP-190 INTRON CLIP-190	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Ubx
2R	13415561	2R_13415561_SNP [dm3] 2R_17528056_SNP [dm6]	A	G	2.590e^-4	0.869	SYNONYMOUS_CODING Patronin
3L	16313370	3L_16313370_SNP [dm3] 3L_16320270_SNP [dm6]	T	A	2.607e^-4	0.869	SYNONYMOUS_CODING CG13060 UPSTREAM CG13041 & 1 other DOWNSTREAM CG42718
3L	14389469	3L_14389469_SNP [dm3] 3L_14396369_SNP [dm6]	C	G	2.608e^-4	0.869	INTERGENIC
2R	13242799	2R_13242799_SNP [dm3] 2R_17355294_SNP [dm6]	T	G	2.609e^-4	0.869	INTRON mbl
2L	15147427	2L_15147427_DEL [dm3] 2L_15147427_DEL [dm6]	GG	G	2.610e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	18863617	2L_18863617_SNP [dm3] 2L_18863617_SNP [dm6]	G	T	2.617e^-4	0.869	INTRON tup
3L	15615013	3L_15615013_SNP [dm3] 3L_15621913_SNP [dm6]	T	C	2.618e^-4	0.869	SYNONYMOUS_CODING CG7372 INTRON comm3	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	10697089	3L_10697089_INS [dm3] 3L_10703989_INS [dm6]	A	AGAAAGA	2.624e^-4	0.869	INTERGENIC
3R	10435018	3R_10435018_SNP [dm3] 3R_14609296_SNP [dm6]	T	G	2.624e^-4	0.869	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	20811748	3L_20811748_SNP [dm3] 3L_20818648_SNP [dm6]	C	G	2.632e^-4	0.869	UPSTREAM Pka-R1 & 1 other INTRON Pka-R1
2L	14535386	2L_14535386_SNP [dm3] 2L_14535386_SNP [dm6]	C	T	2.639e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	11309234	X_11309234_SNP [dm3] X_11415201_SNP [dm6]	C	T	2.642e^-4	0.869	SYNONYMOUS_CODING Gr10a DOWNSTREAM Or10a	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	7296139	3L_7296139_DEL [dm3] 3L_7303039_DEL [dm6]	AA	A	2.642e^-4	0.869	INTRON unc-13-4A
X	9127794	X_9127794_SNP [dm3] X_9233761_SNP [dm6]	C	G	2.646e^-4	0.869	SYNONYMOUS_CODING Ir8a	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14515011	3R_14515011_SNP [dm3] 3R_18689289_SNP [dm6]	G	A	2.648e^-4	0.869	NON_SYNONYMOUS_CODING Muc91C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5121979	3R_5121979_SNP [dm3] 3R_9296257_SNP [dm6]	T	G	2.650e^-4	0.869	INTRON CG8861
2L	21805871	2L_21805871_SNP [dm3] 2L_21805871_SNP [dm6]	G	C	2.654e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	15233541	3L_15233541_SNP [dm3] 3L_15240441_SNP [dm6]	G	A	2.663e^-4	0.869	UTR_3_PRIME Tollo
3L	13953220	3L_13953220_SNP [dm3] 3L_13960120_SNP [dm6]	G	A	2.676e^-4	0.869	INTRON CG32137
3L	3143723	3L_3143723_SNP [dm3] 3L_3143723_SNP [dm6]	G	A	2.691e^-4	0.869	UPSTREAM CG1291 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	11632796	3L_11632796_SNP [dm3] 3L_11639696_SNP [dm6]	G	T	2.712e^-4	0.869	INTRON CG32091
3R	13175133	3R_13175133_SNP [dm3] 3R_17349411_SNP [dm6]	A	C	2.712e^-4	0.869	INTRON beat-IIa
2R	11571935	2R_11571935_SNP [dm3] 2R_15684430_SNP [dm6]	G	T	2.716e^-4	0.869	SYNONYMOUS_CODING Ranbp11 DOWNSTREAM CG30082 EXON CR43429	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	2860427	3R_2860427_SNP [dm3] 3R_7034705_SNP [dm6]	C	T	2.726e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4108029	3R_4108029_SNP [dm3] 3R_8282307_SNP [dm6]	G	T	2.734e^-4	0.869	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	14840251	2L_14840251_SNP [dm3] 2L_14840251_SNP [dm6]	T	A	2.742e^-4	0.869	DOWNSTREAM CR43805 INTERGENIC
3R	4854375	3R_4854375_SNP [dm3] 3R_9028653_SNP [dm6]	C	T	2.743e^-4	0.869	INTRON neur	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	3963291	3R_3963291_SNP [dm3] 3R_8137569_SNP [dm6]	C	G	2.745e^-4	0.869	INTERGENIC
2L	16763582	2L_16763582_SNP [dm3] 2L_16763582_SNP [dm6]	G	T	2.751e^-4	0.869	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19903507	2L_19903507_SNP [dm3] 2L_19903507_SNP [dm6]	C	T	2.753e^-4	0.869	INTRON sick
X	17061765	X_17061765_SNP [dm3] X_17167732_SNP [dm6]	C	G	2.753e^-4	0.869	INTRON baz
X	17061777	X_17061777_SNP [dm3] X_17167744_SNP [dm6]	G	T	2.753e^-4	0.869	INTRON baz
X	17061793	X_17061793_SNP [dm3] X_17167760_SNP [dm6]	A	T	2.753e^-4	0.869	INTRON baz
X	17061814	X_17061814_DEL [dm3] X_17167781_DEL [dm6]	CAAGCTAAC	C	2.753e^-4	0.869	INTRON baz
3R	12188859	3R_12188859_SNP [dm3] 3R_16363137_SNP [dm6]	T	C	2.755e^-4	0.869	INTRON CG14880
2R	18010238	2R_18010238_SNP [dm3] 2R_22122733_SNP [dm6]	C	T	2.758e^-4	0.869	UPSTREAM mei-S332 & 1 other INTRON mei-S332	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8447795	2L_8447795_SNP [dm3] 2L_8447795_SNP [dm6]	C	T	2.767e^-4	0.869	SYNONYMOUS_CODING U26 UTR_3_PRIME U26
2R	3264986	2R_3264986_SNP [dm3] 2R_7377481_SNP [dm6]	C	A	2.772e^-4	0.869	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8669539	2L_8669539_INS [dm3] 2L_8669539_INS [dm6]	T	TT	2.774e^-4	0.869	UTR_3_PRIME Sema-1a
2L	4142233	2L_4142233_SNP [dm3] 2L_4142233_SNP [dm6]	C	T	2.784e^-4	0.869	INTERGENIC
X	8173882	X_8173882_SNP [dm3] X_8279849_SNP [dm6]	T	C	2.796e^-4	0.869	UTR_3_PRIME nAChRalpha3	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
3L	8041754	3L_8041754_SNP [dm3] 3L_8048654_SNP [dm6]	T	C	2.800e^-4	0.869	INTRON nmo
2R	3265898	2R_3265898_SNP [dm3] 2R_7378393_SNP [dm6]	C	A	2.818e^-4	0.869	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
3R	14298842	3R_14298842_SNP [dm3] 3R_18473120_SNP [dm6]	A	T	2.820e^-4	0.869	INTRON fru
3L	15483419	3L_15483419_SNP [dm3] 3L_15490319_SNP [dm6]	T	A	2.820e^-4	0.869	INTERGENIC
3L	12097022	3L_12097022_DEL [dm3] 3L_12103922_DEL [dm6]	AACTAAAAATTGA...	A	2.821e^-4	0.869	INTERGENIC
2L	15119302	2L_15119302_SNP [dm3] 2L_15119302_SNP [dm6]	T	C	2.823e^-4	0.869	UPSTREAM CR43853 INTERGENIC
3L	9177943	3L_9177943_SNP [dm3] 3L_9184843_SNP [dm6]	A	C	2.827e^-4	0.869	INTERGENIC
2R	19024849	2R_19024849_SNP [dm3] 2R_23137326_SNP [dm6]	T	G	2.828e^-4	0.869	INTERGENIC
3R	10365362	3R_10365362_SNP [dm3] 3R_14539640_SNP [dm6]	G	A	2.831e^-4	0.869	INTRON Pde6
3L	7721452	3L_7721452_SNP [dm3] 3L_7728352_SNP [dm6]	A	G	2.832e^-4	0.869	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
2L	11686609	2L_11686609_SNP [dm3] 2L_11686609_SNP [dm6]	G	A	2.833e^-4	0.869	INTERGENIC
3R	20478904	3R_20478904_SNP [dm3] 3R_24653182_SNP [dm6]	T	C	2.834e^-4	0.869	SYNONYMOUS_CODING ash2 DOWNSTREAM CG31125
2L	18871904	2L_18871904_SNP [dm3] 2L_18871904_SNP [dm6]	T	A	2.843e^-4	0.869	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15214273	3R_15214273_SNP [dm3] 3R_19388551_SNP [dm6]	T	A	2.846e^-4	0.869	SYNONYMOUS_CODING CG3734 DOWNSTREAM CR34285 INTRON Ino80	TF binding site mE1_TFBS_sens
3L	16338175	3L_16338175_SNP [dm3] 3L_16345075_SNP [dm6]	C	T	2.853e^-4	0.869	UTR_3_PRIME CG4998	TF binding site mE1_TFBS_cad
2L	11690194	2L_11690194_SNP [dm3] 2L_11690194_SNP [dm6]	A	G	2.858e^-4	0.869	INTERGENIC
3L	14154826	3L_14154826_SNP [dm3] 3L_14161726_SNP [dm6]	T	G	2.860e^-4	0.869	INTERGENIC	regulatory region REDfly_CRMs
2R	14074046	2R_14074046_SNP [dm3] 2R_18186541_SNP [dm6]	T	C	2.866e^-4	0.869	SYNONYMOUS_CODING CG33958
3R	14351051	3R_14351051_SNP [dm3] 3R_18525329_SNP [dm6]	G	A	2.867e^-4	0.869	INTRON fru	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7109463	2L_7109463_SNP [dm3] 2L_7109463_SNP [dm6]	C	T	2.871e^-4	0.869	INTRON Pvf3
2L	9950074	2L_9950074_SNP [dm3] 2L_9950074_SNP [dm6]	G	T	2.873e^-4	0.869	DOWNSTREAM mir-87 INTERGENIC
2R	14219218	2R_14219218_DEL [dm3] 2R_18331713_DEL [dm6]	AGGAAACCCCAATAGA...	A	2.875e^-4	0.869	INTRON sbb	TF binding site mE1_TFBS_inv
2L	15190205	2L_15190205_SNP [dm3] 2L_15190205_SNP [dm6]	T	C	2.879e^-4	0.869	INTRON CG4168
2L	21879086	2L_21879086_SNP [dm3] 2L_21879086_SNP [dm6]	C	G	2.879e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9431224	2L_9431224_SNP [dm3] 2L_9431224_SNP [dm6]	A	C	2.880e^-4	0.869	UPSTREAM scat & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5862491	2L_5862491_SNP [dm3] 2L_5862491_SNP [dm6]	C	T	2.886e^-4	0.869	INTRON rau
3L	12815785	3L_12815785_SNP [dm3] 3L_12822685_SNP [dm6]	C	T	2.886e^-4	0.869	INTRON CG42588
3L	10755115	3L_10755115_SNP [dm3] 3L_10762015_SNP [dm6]	C	T	2.893e^-4	0.869	INTERGENIC
2L	11879858	2L_11879858_SNP [dm3] 2L_11879858_SNP [dm6]	C	A	2.896e^-4	0.869	INTRON Pde1c
2L	10110377	2L_10110377_SNP [dm3] 2L_10110377_SNP [dm6]	A	C	2.901e^-4	0.869	INTRON CG44153 & 1 other
3L	20732890	3L_20732890_SNP [dm3] 3L_20739790_SNP [dm6]	T	C	2.905e^-4	0.869	UPSTREAM Gr77a INTRON CG13252
2R	3264542	2R_3264542_SNP [dm3] 2R_7377037_SNP [dm6]	A	G	2.909e^-4	0.869	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3932381	2L_3932381_SNP [dm3] 2L_3932381_SNP [dm6]	T	C	2.909e^-4	0.869	INTRON fred
3R	7987958	3R_7987958_INS [dm3] 3R_12162236_INS [dm6]	G	GGCCAACGAACCAGTCAG...	2.911e^-4	0.869	DOWNSTREAM Cpn INTERGENIC
3L	15234136	3L_15234136_SNP [dm3] 3L_15241036_SNP [dm6]	A	G	2.916e^-4	0.869	UTR_3_PRIME Tollo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	11686615	2L_11686615_SNP [dm3] 2L_11686615_SNP [dm6]	A	G	2.923e^-4	0.869	INTERGENIC
2L	3291545	2L_3291545_SNP [dm3] 2L_3291545_SNP [dm6]	G	T	2.927e^-4	0.869	SYNONYMOUS_CODING CG9664 UTR_3_PRIME CG9664	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	13653673	X_13653673_SNP [dm3] X_13759640_SNP [dm6]	C	T	2.933e^-4	0.869	SYNONYMOUS_CODING Yp3	TF binding site mE1_TFBS_sens
3R	4937644	3R_4937644_SNP [dm3] 3R_9111922_SNP [dm6]	A	T	2.936e^-4	0.869	INTRON pum
3L	16036484	3L_16036484_SNP [dm3] 3L_16043384_SNP [dm6]	T	A	2.942e^-4	0.869	UPSTREAM th INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Stat92E mE1_TFBS_Trl
2R	8135117	2R_8135117_SNP [dm3] 2R_12247612_SNP [dm6]	G	A	2.954e^-4	0.869	UPSTREAM CR44315 INTERGENIC
3R	22253533	3R_22253533_SNP [dm3] 3R_26427811_SNP [dm6]	C	A	2.962e^-4	0.869	UPSTREAM CR43434 INTRON CR31084
3R	15767587	3R_15767587_SNP [dm3] 3R_19941865_SNP [dm6]	C	A	2.965e^-4	0.869	INTRON Hs6st
2R	3979055	2R_3979055_SNP [dm3] 2R_8091550_SNP [dm6]	T	G	2.966e^-4	0.869	UPSTREAM CG8713 DOWNSTREAM sut3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	12287350	3L_12287350_SNP [dm3] 3L_12294250_SNP [dm6]	T	G	2.969e^-4	0.869	INTRON CG4328
2L	19890124	2L_19890124_SNP [dm3] 2L_19890124_SNP [dm6]	T	G	2.973e^-4	0.869	DOWNSTREAM CG10481 INTRON sick
3R	25654903	3R_25654903_SNP [dm3] 3R_29829181_SNP [dm6]	A	G	2.974e^-4	0.869	INTRON Atg16	enhancer mE1_CBP_Enhancers
2L	3290072	2L_3290072_SNP [dm3] 2L_3290072_SNP [dm6]	A	T	2.975e^-4	0.869	INTERGENIC
3R	16889961	3R_16889961_SNP [dm3] 3R_21064239_SNP [dm6]	A	G	2.983e^-4	0.869	INTRON Cortactin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	22211626	3R_22211626_SNP [dm3] 3R_26385904_SNP [dm6]	C	T	2.993e^-4	0.869	INTERGENIC
3L	15483252	3L_15483252_SNP [dm3] 3L_15490152_SNP [dm6]	G	T	2.999e^-4	0.869	INTERGENIC
2L	19480302	2L_19480302_SNP [dm3] 2L_19480302_SNP [dm6]	A	C	3.001e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	6050516	3R_6050516_SNP [dm3] 3R_10224794_SNP [dm6]	G	A	3.001e^-4	0.869	UPSTREAM CG34107 & 2 others INTERGENIC
3L	7257549	3L_7257549_SNP [dm3] 3L_7264449_SNP [dm6]	T	A	3.002e^-4	0.869	UPSTREAM CG14830 INTERGENIC
2R	20783402	2R_20783402_SNP [dm3] 2R_24895879_SNP [dm6]	T	C	3.004e^-4	0.869	INTRON NaCP60E	TF binding site mE1_TFBS_chinmo
2L	4850478	2L_4850478_SNP [dm3] 2L_4850478_SNP [dm6]	A	C	3.021e^-4	0.869	UPSTREAM Mon1 & 1 other DOWNSTREAM CG11927 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	18858626	2L_18858626_SNP [dm3] 2L_18858626_SNP [dm6]	A	G	3.038e^-4	0.869	UPSTREAM CG10602 DOWNSTREAM tup INTRON CG10602 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
3L	13990762	3L_13990762_SNP [dm3] 3L_13997662_SNP [dm6]	G	A	3.041e^-4	0.869	NON_SYNONYMOUS_CODING CG17361 DOWNSTREAM CG17359	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19239618	2L_19239618_SNP [dm3] 2L_19239618_SNP [dm6]	A	G	3.050e^-4	0.869	INTERGENIC
3L	8581829	3L_8581829_SNP [dm3] 3L_8588729_SNP [dm6]	A	G	3.051e^-4	0.869	SYNONYMOUS_CODING CG43078	TF binding site mE1_TFBS_chinmo
3R	5878395	3R_5878395_SNP [dm3] 3R_10052673_SNP [dm6]	A	G	3.055e^-4	0.869	UPSTREAM Npc2e DOWNSTREAM CR44192 INTRON Fancl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	21846992	2L_21846992_SNP [dm3] 2L_21846992_SNP [dm6]	A	C	3.056e^-4	0.869	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15120130	2L_15120130_SNP [dm3] 2L_15120130_SNP [dm6]	C	G	3.057e^-4	0.869	EXON CR43853
3R	25753279	3R_25753279_SNP [dm3] 3R_29927557_SNP [dm6]	G	T	3.062e^-4	0.869	UTR_5_PRIME CG15522 INTRON CG15522
X	16791329	X_16791329_SNP [dm3] X_16897296_SNP [dm6]	G	A	3.073e^-4	0.869	UPSTREAM CG33252 INTERGENIC
3R	26618148	3R_26618148_SNP [dm3] 3R_30792426_SNP [dm6]	T	G	3.076e^-4	0.869	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
2R	18146411	2R_18146411_SNP [dm3] 2R_22258906_SNP [dm6]	A	C	3.077e^-4	0.869	INTRON dve
2R	12434412	2R_12434412_SNP [dm3] 2R_16546907_SNP [dm6]	T	G	3.078e^-4	0.869	INTERGENIC
2R	11327910	2R_11327910_SNP [dm3] 2R_15440405_SNP [dm6]	T	C	3.080e^-4	0.869	INTRON CG43729
3R	5878383	3R_5878383_SNP [dm3] 3R_10052661_SNP [dm6]	G	T	3.093e^-4	0.869	UPSTREAM Npc2e DOWNSTREAM CR44192 INTRON Fancl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14305173	X_14305173_SNP [dm3] X_14411140_SNP [dm6]	C	A	3.101e^-4	0.869	INTRON dpr8
3L	712455	3L_712455_SNP [dm3] 3L_712455_SNP [dm6]	C	T	3.108e^-4	0.869	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	2348672	3L_2348672_SNP [dm3] 3L_2348672_SNP [dm6]	T	C	3.111e^-4	0.869	INTERGENIC
3L	2348676	3L_2348676_SNP [dm3] 3L_2348676_SNP [dm6]	C	T	3.111e^-4	0.869	INTERGENIC
2R	4269378	2R_4269378_SNP [dm3] 2R_8381873_SNP [dm6]	T	C	3.113e^-4	0.869	INTRON pdm3
3R	5145048	3R_5145048_SNP [dm3] 3R_9319326_SNP [dm6]	G	A	3.118e^-4	0.869	INTRON CG8861
3R	10410917	3R_10410917_SNP [dm3] 3R_14585195_SNP [dm6]	A	T	3.118e^-4	0.869	INTRON stumps	TF binding site BDTNP1_TFBS_prd
3L	4539626	3L_4539626_SNP [dm3] 3L_4539626_SNP [dm6]	T	C	3.126e^-4	0.869	SYNONYMOUS_CODING CG32243 DOWNSTREAM CG11353
2L	21851919	2L_21851919_INS [dm3] 2L_21851919_INS [dm6]	T	TTCT	3.128e^-4	0.869	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	11686606	2L_11686606_SNP [dm3] 2L_11686606_SNP [dm6]	A	T	3.131e^-4	0.869	INTERGENIC
2L	22020382	2L_22020382_SNP [dm3] 2L_22020382_SNP [dm6]	G	T	3.133e^-4	0.869	DOWNSTREAM CR33987 INTRON tio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	16865581	2L_16865581_SNP [dm3] 2L_16865581_SNP [dm6]	T	C	3.138e^-4	0.869	INTERGENIC
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	3.139e^-4	0.869	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
X	14770089	X_14770089_SNP [dm3] X_14876056_SNP [dm6]	G	T	3.143e^-4	0.869	SYNONYMOUS_CODING CG45065 UTR_3_PRIME CG45064 INTRON Flo2	TF binding site mE1_TFBS_sens
3L	7480613	3L_7480613_SNP [dm3] 3L_7487513_SNP [dm6]	A	G	3.143e^-4	0.869	INTRON mthl6
2R	11251263	2R_11251263_SNP [dm3] 2R_15363758_SNP [dm6]	T	A	3.149e^-4	0.869	INTRON unc-5
3L	15483280	3L_15483280_SNP [dm3] 3L_15490180_SNP [dm6]	T	C	3.157e^-4	0.869	INTERGENIC
3L	13487564	3L_13487564_SNP [dm3] 3L_13494464_SNP [dm6]	G	T	3.161e^-4	0.869	INTRON Tgi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	12415207	2L_12415207_SNP [dm3] 2L_12415207_SNP [dm6]	A	G	3.163e^-4	0.869	INTRON vir-1
2L	18376134	2L_18376134_SNP [dm3] 2L_18376134_SNP [dm6]	C	A	3.178e^-4	0.869	INTRON Fas3	TF binding site mE1_TFBS_sbb
3L	7836051	3L_7836051_INS [dm3] 3L_7842951_INS [dm6]	T	TAT	3.190e^-4	0.869	INTRON Pdp1	regulatory region REDfly_CRMs
2R	14451040	2R_14451040_SNP [dm3] 2R_18563535_SNP [dm6]	A	G	3.199e^-4	0.869	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8156894	X_8156894_INS [dm3] X_8262861_INS [dm6]	T	TTCCACGCTCCGAACCAAAT...	3.209e^-4	0.869	INTRON CG1632	TF binding site BDTNP1_TFBS_da
2L	8979725	2L_8979725_SNP [dm3] 2L_8979725_SNP [dm6]	C	T	3.211e^-4	0.869	UPSTREAM CG18662 INTRON CG13101
3R	6218645	3R_6218645_SNP [dm3] 3R_10392923_SNP [dm6]	A	G	3.216e^-4	0.869	INTRON cwo
2R	11481430	2R_11481430_SNP [dm3] 2R_15593925_SNP [dm6]	T	C	3.227e^-4	0.869	INTERGENIC
3L	12147000	3L_12147000_SNP [dm3] 3L_12153900_SNP [dm6]	C	T	3.227e^-4	0.869	INTRON Nrx-IV
3L	14154788	3L_14154788_SNP [dm3] 3L_14161688_SNP [dm6]	G	C	3.235e^-4	0.869	INTERGENIC	regulatory region REDfly_CRMs
3R	13570318	3R_13570318_SNP [dm3] 3R_17744596_SNP [dm6]	C	A	3.236e^-4	0.869	INTRON TyrRII	TF binding site mE1_TFBS_cad
2R	7002361	2R_7002361_DEL [dm3] 2R_11114856_DEL [dm6]	AC	G	3.246e^-4	0.869	INTRON luna	TF binding site BDTNP1_TFBS_twi
2R	5234040	2R_5234040_SNP [dm3] 2R_9346535_SNP [dm6]	T	C	3.247e^-4	0.869	INTRON CG13954 & 2 others	TF binding site mE1_TFBS_chinmo
3R	13106773	3R_13106773_SNP [dm3] 3R_17281051_SNP [dm6]	T	C	3.248e^-4	0.869	INTERGENIC
3R	10969939	3R_10969939_SNP [dm3] 3R_15144217_SNP [dm6]	G	A	3.250e^-4	0.869	INTRON GlyS	TF binding site mE1_TFBS_cad
2L	17138834	2L_17138834_DEL [dm3] 2L_17138834_DEL [dm6]	AA	A	3.252e^-4	0.869	INTRON beat-IIIa & 1 other
X	19555336	X_19555336_SNP [dm3] X_19661303_SNP [dm6]	C	T	3.253e^-4	0.869	NON_SYNONYMOUS_CODING CG14223	TF binding site mE1_TFBS_chinmo
3R	4863020	3R_4863020_SNP [dm3] 3R_9037298_SNP [dm6]	C	T	3.262e^-4	0.869	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12055410	3L_12055410_SNP [dm3] 3L_12062310_SNP [dm6]	C	T	3.267e^-4	0.869	INTRON rols	TF binding site BDTNP1_TFBS_da
2R	8366292	2R_8366292_SNP [dm3] 2R_12478787_SNP [dm6]	C	T	3.274e^-4	0.869	INTRON Dh44-R2
2R	11724908	2R_11724908_SNP [dm3] 2R_15837403_SNP [dm6]	C	T	3.290e^-4	0.869	INTRON tun	regulatory region REDfly_CRMs
3L	4821645	3L_4821645_SNP [dm3] 3L_4821645_SNP [dm6]	C	G	3.304e^-4	0.869	INTRON Dhc64C
3L	4821647	3L_4821647_SNP [dm3] 3L_4821647_SNP [dm6]	A	G	3.304e^-4	0.869	INTRON Dhc64C
2L	2692984	2L_2692984_SNP [dm3] 2L_2692984_SNP [dm6]	C	G	3.314e^-4	0.869	INTRON CG31690
3L	22332078	3L_22332078_SNP [dm3] 3L_22338978_SNP [dm6]	C	T	3.320e^-4	0.869	INTRON Ten-m	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8292944	X_8292944_SNP [dm3] X_8398911_SNP [dm6]	G	C	3.321e^-4	0.869	UPSTREAM CG10555 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	391184	3L_391184_SNP [dm3] 3L_391184_SNP [dm6]	C	A	3.323e^-4	0.869	DOWNSTREAM CR45378 INTRON trh
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	3.332e^-4	0.869	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1676992	2L_1676992_SNP [dm3] 2L_1676992_SNP [dm6]	A	T	3.333e^-4	0.869	INTRON chinmo
X	16791311	X_16791311_SNP [dm3] X_16897278_SNP [dm6]	G	C	3.344e^-4	0.869	UPSTREAM CG33252 INTERGENIC
X	16442154	X_16442154_SNP [dm3] X_16548121_SNP [dm6]	A	C	3.349e^-4	0.869	UPSTREAM CG9902 DOWNSTREAM Arp2 INTERGENIC	transposable element FlyBase
2R	9120533	2R_9120533_SNP [dm3] 2R_13233028_SNP [dm6]	T	A	3.369e^-4	0.869	INTRON CG4670
X	9721384	X_9721384_DEL [dm3] X_9827351_DEL [dm6]	AA	A	3.370e^-4	0.869	INTRON CG32698
3R	22430105	3R_22430105_SNP [dm3] 3R_26604383_SNP [dm6]	A	C	3.370e^-4	0.869	DOWNSTREAM scrib INTERGENIC
3L	1109916	3L_1109916_SNP [dm3] 3L_1109916_SNP [dm6]	C	T	3.371e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	25973021	3R_25973021_SNP [dm3] 3R_30147299_SNP [dm6]	T	C	3.372e^-4	0.869	INTRON AdoR
3R	2552488	3R_2552488_SNP [dm3] 3R_6726766_SNP [dm6]	G	A	3.384e^-4	0.869	INTRON pb	regulatory region FlyBase REDfly_CRMs
2R	14665267	2R_14665267_SNP [dm3] 2R_18777762_SNP [dm6]	C	T	3.388e^-4	0.869	UPSTREAM CG15093 DOWNSTREAM CR43964 INTERGENIC
3L	20908348	3L_20908348_SNP [dm3] 3L_20915248_SNP [dm6]	G	A	3.390e^-4	0.869	INTERGENIC
2R	20161899	2R_20161899_SNP [dm3] 2R_24274376_SNP [dm6]	G	A	3.392e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	7001784	2R_7001784_SNP [dm3] 2R_11114279_SNP [dm6]	T	C	3.393e^-4	0.869	INTRON luna
2R	14678570	2R_14678570_SNP [dm3] 2R_18791065_SNP [dm6]	C	T	3.403e^-4	0.869	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18418701	2R_18418701_SNP [dm3] 2R_22531196_SNP [dm6]	A	C	3.410e^-4	0.869	INTRON px
2R	18418702	2R_18418702_SNP [dm3] 2R_22531197_SNP [dm6]	C	A	3.410e^-4	0.869	INTRON px
3R	22542460	3R_22542460_SNP [dm3] 3R_26716738_SNP [dm6]	A	G	3.421e^-4	0.869	SYNONYMOUS_CODING CG6425	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20602541	3R_20602541_SNP [dm3] 3R_24776819_SNP [dm6]	G	A	3.427e^-4	0.869	INTRON CG42331
2L	4141333	2L_4141333_SNP [dm3] 2L_4141333_SNP [dm6]	T	C	3.432e^-4	0.869	INTERGENIC
2L	5758251	2L_5758251_SNP [dm3] 2L_5758251_SNP [dm6]	C	A	3.439e^-4	0.869	INTRON CG11030
3R	14932967	3R_14932967_SNP [dm3] 3R_19107245_SNP [dm6]	T	C	3.448e^-4	0.869	INTRON CG6040
3R	3934385	3R_3934385_SNP [dm3] 3R_8108663_SNP [dm6]	A	G	3.450e^-4	0.869	INTRON puc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15121426	2L_15121426_SNP [dm3] 2L_15121426_SNP [dm6]	G	A	3.453e^-4	0.869	DOWNSTREAM CR43853 INTERGENIC
3R	9817323	3R_9817323_SNP [dm3] 3R_13991601_SNP [dm6]	T	A	3.454e^-4	0.869	INTRON rdx
3R	26461215	3R_26461215_SNP [dm3] 3R_30635493_SNP [dm6]	G	A	3.461e^-4	0.869	INTERGENIC
2L	7025374	2L_7025374_SNP [dm3] 2L_7025374_SNP [dm6]	G	A	3.469e^-4	0.869	SYNONYMOUS_CODING CG31908	TF binding site mE1_TFBS_cad
3R	1531569	3R_1531569_SNP [dm3] 3R_5705847_SNP [dm6]	C	T	3.472e^-4	0.869	UPSTREAM plx INTRON plx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25752413	3R_25752413_SNP [dm3] 3R_29926691_SNP [dm6]	G	A	3.472e^-4	0.869	UPSTREAM Jon99Ci & 1 other INTERGENIC
2L	2593511	2L_2593511_SNP [dm3] 2L_2593511_SNP [dm6]	G	C	3.475e^-4	0.869	DOWNSTREAM CG15394 INTERGENIC
2L	13610291	2L_13610291_SNP [dm3] 2L_13610291_SNP [dm6]	C	T	3.477e^-4	0.869	NON_SYNONYMOUS_CODING kuz DOWNSTREAM mir-2489
X	19011939	X_19011939_SNP [dm3] X_19117906_SNP [dm6]	C	A	3.479e^-4	0.869	INTERGENIC
3L	4580364	3L_4580364_SNP [dm3] 3L_4580364_SNP [dm6]	G	A	3.480e^-4	0.869	INTRON CG42540
3L	7721198	3L_7721198_SNP [dm3] 3L_7728098_SNP [dm6]	G	T	3.482e^-4	0.869	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_HSA
3L	4897685	3L_4897685_SNP [dm3] 3L_4897685_SNP [dm6]	T	C	3.485e^-4	0.869	SYNONYMOUS_CODING CG13705	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4853912	3R_4853912_SNP [dm3] 3R_9028190_SNP [dm6]	C	T	3.492e^-4	0.869	INTRON neur	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5907797	3R_5907797_SNP [dm3] 3R_10082075_SNP [dm6]	C	T	3.501e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	17259658	X_17259658_SNP [dm3] X_17365625_SNP [dm6]	T	C	3.504e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	16207637	3L_16207637_SNP [dm3] 3L_16214537_SNP [dm6]	G	C	3.506e^-4	0.869	DOWNSTREAM CR43891 INTRON CG13073
2R	11330408	2R_11330408_SNP [dm3] 2R_15442903_SNP [dm6]	C	T	3.526e^-4	0.869	INTRON CG43729
3R	21427786	3R_21427786_SNP [dm3] 3R_25602064_SNP [dm6]	T	A	3.534e^-4	0.869	UTR_3_PRIME msi DOWNSTREAM msi INTRON ymp
2L	8203812	2L_8203812_SNP [dm3] 2L_8203812_SNP [dm6]	C	T	3.534e^-4	0.869	INTRON CR44119 & 1 other
2L	11849745	2L_11849745_SNP [dm3] 2L_11849745_SNP [dm6]	G	A	3.539e^-4	0.869	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
3L	15236814	3L_15236814_SNP [dm3] 3L_15243714_SNP [dm6]	G	T	3.540e^-4	0.869	DOWNSTREAM Tollo INTERGENIC
2R	11576600	2R_11576600_SNP [dm3] 2R_15689095_SNP [dm6]	G	T	3.550e^-4	0.869	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8706288	2L_8706288_SNP [dm3] 2L_8706288_SNP [dm6]	T	C	3.554e^-4	0.869	SYNONYMOUS_CODING CG9314 DOWNSTREAM CR44992 INTRON Hnf4	TF binding site mE1_TFBS_sens
3R	14933478	3R_14933478_SNP [dm3] 3R_19107756_SNP [dm6]	T	A	3.571e^-4	0.869	INTRON CG6040
2R	16794328	2R_16794328_SNP [dm3] 2R_20906823_SNP [dm6]	G	A	3.582e^-4	0.869	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
2R	16794339	2R_16794339_SNP [dm3] 2R_20906834_SNP [dm6]	T	A	3.582e^-4	0.869	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
2R	7107070	2R_7107070_SNP [dm3] 2R_11219565_SNP [dm6]	T	C	3.583e^-4	0.869	UTR_5_PRIME Syx6 UPSTREAM Syx6 & 1 other INTRON CG9084	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	16325199	3L_16325199_SNP [dm3] 3L_16332099_SNP [dm6]	A	G	3.584e^-4	0.869	NON_SYNONYMOUS_CODING retinin DOWNSTREAM CG33061 & 1 other	TF binding site mE1_TFBS_cad
3R	4877339	3R_4877339_SNP [dm3] 3R_9051617_SNP [dm6]	C	T	3.584e^-4	0.869	NON_SYNONYMOUS_CODING Mst85C UPSTREAM Kdm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	18478663	3R_18478663_SNP [dm3] 3R_22652941_SNP [dm6]	T	A	3.593e^-4	0.869	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	15413677	X_15413677_SNP [dm3] X_15519644_SNP [dm6]	C	G	3.602e^-4	0.869	INTRON Ac13E
3R	10969892	3R_10969892_SNP [dm3] 3R_15144170_SNP [dm6]	A	G	3.607e^-4	0.869	INTRON GlyS	TF binding site mE1_TFBS_cad
2L	19968199	2L_19968199_SNP [dm3] 2L_19968199_SNP [dm6]	A	G	3.609e^-4	0.869	UPSTREAM Hf DOWNSTREAM CG43861 INTERGENIC
3L	15321323	3L_15321323_SNP [dm3] 3L_15328223_SNP [dm6]	A	T	3.610e^-4	0.869	INTERGENIC
X	19315420	X_19315420_DEL [dm3] X_19421387_DEL [dm6]	CATACATATATGTGT...	C	3.611e^-4	0.869	INTRON kek5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8173850	X_8173850_SNP [dm3] X_8279817_SNP [dm6]	A	G	3.619e^-4	0.869	UTR_3_PRIME nAChRalpha3	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
3L	7100166	3L_7100166_SNP [dm3] 3L_7107066_SNP [dm6]	A	G	3.627e^-4	0.869	INTRON form3
2L	5557570	2L_5557570_SNP [dm3] 2L_5557570_SNP [dm6]	T	A	3.640e^-4	0.869	INTRON GluRIIA
2L	4713494	2L_4713494_SNP [dm3] 2L_4713494_SNP [dm6]	C	T	3.643e^-4	0.869	INTRON CG34351	TF binding site mE1_TFBS_inv
3L	7156753	3L_7156753_SNP [dm3] 3L_7163653_SNP [dm6]	G	A	3.649e^-4	0.869	INTRON Dscam2
3L	7156769	3L_7156769_SNP [dm3] 3L_7163669_SNP [dm6]	G	A	3.649e^-4	0.869	INTRON Dscam2
X	13256704	X_13256704_SNP [dm3] X_13362671_SNP [dm6]	G	C	3.654e^-4	0.869	INTRON Syt12
3L	9685669	3L_9685669_SNP [dm3] 3L_9692569_SNP [dm6]	A	G	3.665e^-4	0.869	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	8066813	2L_8066813_SNP [dm3] 2L_8066813_SNP [dm6]	A	G	3.668e^-4	0.869	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad
X	13914924	X_13914924_SNP [dm3] X_14020891_SNP [dm6]	C	G	3.674e^-4	0.869	INTERGENIC
X	20218600	X_20218600_SNP [dm3] X_20347573_SNP [dm6]	T	A	3.679e^-4	0.869	INTERGENIC
2L	21906167	2L_21906167_SNP [dm3] 2L_21906167_SNP [dm6]	A	T	3.680e^-4	0.869	UPSTREAM CG1428 INTERGENIC
2R	17930230	2R_17930230_SNP [dm3] 2R_22042725_SNP [dm6]	T	C	3.682e^-4	0.869	SYNONYMOUS_CODING PpD5
3R	4679807	3R_4679807_SNP [dm3] 3R_8854085_SNP [dm6]	G	A	3.693e^-4	0.869	INTRON pyd	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
2R	14726419	2R_14726419_SNP [dm3] 2R_18838914_SNP [dm6]	A	G	3.696e^-4	0.869	SYNONYMOUS_CODING CG15099	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16794266	2R_16794266_SNP [dm3] 2R_20906761_SNP [dm6]	C	G	3.699e^-4	0.869	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
2R	16794363	2R_16794363_SNP [dm3] 2R_20906858_SNP [dm6]	T	A	3.699e^-4	0.869	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
2R	16794370	2R_16794370_SNP [dm3] 2R_20906865_SNP [dm6]	C	T	3.699e^-4	0.869	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
2R	16794579	2R_16794579_SNP [dm3] 2R_20907074_SNP [dm6]	T	A	3.699e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	2645611	3L_2645611_SNP [dm3] 3L_2645611_SNP [dm6]	C	A	3.704e^-4	0.869	INTRON CG1143	TF binding site mE1_TFBS_cad
2L	4145109	2L_4145109_SNP [dm3] 2L_4145109_SNP [dm6]	A	G	3.708e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27189510	3R_27189510_SNP [dm3] 3R_31363788_SNP [dm6]	C	T	3.716e^-4	0.869	INTRON CG34347
3R	27189648	3R_27189648_SNP [dm3] 3R_31363926_SNP [dm6]	C	T	3.716e^-4	0.869	INTRON CG34347
3R	27189682	3R_27189682_SNP [dm3] 3R_31363960_SNP [dm6]	A	T	3.716e^-4	0.869	INTRON CG34347
2R	7602573	2R_7602573_SNP [dm3] 2R_11715068_SNP [dm6]	G	A	3.720e^-4	0.869	INTRON pyr
3L	20750078	3L_20750078_INS [dm3] 3L_20756978_INS [dm6]	G	GTG	3.722e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11724772	2R_11724772_SNP [dm3] 2R_15837267_SNP [dm6]	C	T	3.724e^-4	0.869	INTRON tun	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	14778005	X_14778005_SNP [dm3] X_14883972_SNP [dm6]	A	G	3.728e^-4	0.869	INTRON Flo2
3L	8885634	3L_8885634_SNP [dm3] 3L_8892534_SNP [dm6]	A	T	3.731e^-4	0.869	SYNONYMOUS_CODING Mcm7	TF binding site BDTNP1_TFBS_twi
3R	20225939	3R_20225939_SNP [dm3] 3R_24400217_SNP [dm6]	G	T	3.736e^-4	0.869	UTR_3_PRIME nAChRalpha1 DOWNSTREAM nAChRalpha1
3R	4045004	3R_4045004_SNP [dm3] 3R_8219282_SNP [dm6]	A	G	3.744e^-4	0.869	NON_SYNONYMOUS_CODING CG7800 UPSTREAM CG18249
2L	7153773	2L_7153773_SNP [dm3] 2L_7153773_SNP [dm6]	A	G	3.762e^-4	0.869	INTRON Pvf3
2L	17636056	2L_17636056_SNP [dm3] 2L_17636056_SNP [dm6]	T	G	3.764e^-4	0.869	INTERGENIC
2R	9457526	2R_9457526_SNP [dm3] 2R_13570021_SNP [dm6]	C	G	3.765e^-4	0.869	DOWNSTREAM CG42807 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2L	21055222	2L_21055222_SNP [dm3] 2L_21055222_SNP [dm6]	A	T	3.768e^-4	0.869	NON_SYNONYMOUS_CODING Itgbetanu	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	20993976	2R_20993976_SNP [dm3] 2R_25106453_SNP [dm6]	C	T	3.772e^-4	0.869	INTRON lov
3R	6253185	3R_6253185_SNP [dm3] 3R_10427463_SNP [dm6]	G	C	3.774e^-4	0.869	INTERGENIC
3R	19232536	3R_19232536_SNP [dm3] 3R_23406814_SNP [dm6]	T	A	3.784e^-4	0.869	SYNONYMOUS_CODING Ir94e	TF binding site mE1_TFBS_HSA
3R	10969950	3R_10969950_SNP [dm3] 3R_15144228_SNP [dm6]	C	T	3.785e^-4	0.869	INTRON GlyS	TF binding site mE1_TFBS_cad
X	14768995	X_14768995_SNP [dm3] X_14874962_SNP [dm6]	G	T	3.786e^-4	0.869	DOWNSTREAM CG45065 & 1 other INTRON Flo2
3R	20300669	3R_20300669_SNP [dm3] 3R_24474947_SNP [dm6]	A	G	3.800e^-4	0.869	INTERGENIC
2R	13200879	2R_13200879_SNP [dm3] 2R_17313374_SNP [dm6]	T	G	3.813e^-4	0.869	INTRON mbl
2L	22297776	2L_22297776_SNP [dm3] 2L_22297776_SNP [dm6]	G	A	3.813e^-4	0.869	INTERGENIC	transposable element FlyBase
3L	712319	3L_712319_INS [dm3] 3L_712319_INS [dm6]	C	CA	3.815e^-4	0.869	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712342	3L_712342_SNP [dm3] 3L_712342_SNP [dm6]	A	T	3.815e^-4	0.869	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	21367720	3R_21367720_SNP [dm3] 3R_25541998_SNP [dm6]	A	G	3.817e^-4	0.869	INTRON msi
3R	2851138	3R_2851138_SNP [dm3] 3R_7025416_SNP [dm6]	C	T	3.824e^-4	0.869	INTERGENIC
X	16344746	X_16344746_SNP [dm3] X_16450713_SNP [dm6]	A	T	3.827e^-4	0.869	INTRON Rbp2
2L	8986559	2L_8986559_SNP [dm3] 2L_8986559_SNP [dm6]	T	C	3.827e^-4	0.869	INTRON rost
2L	8986560	2L_8986560_SNP [dm3] 2L_8986560_SNP [dm6]	C	A	3.827e^-4	0.869	INTRON rost
3L	6839481	3L_6839481_SNP [dm3] 3L_6846381_SNP [dm6]	A	C	3.832e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	21065012	2L_21065012_SNP [dm3] 2L_21065012_SNP [dm6]	T	A	3.835e^-4	0.869	INTRON CG9265
3R	7353535	3R_7353535_SNP [dm3] 3R_11527813_SNP [dm6]	C	T	3.840e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11327929	2R_11327929_SNP [dm3] 2R_15440424_SNP [dm6]	G	T	3.845e^-4	0.869	INTRON CG43729
X	14768964	X_14768964_SNP [dm3] X_14874931_SNP [dm6]	T	C	3.850e^-4	0.869	DOWNSTREAM CG45065 & 1 other INTRON Flo2
2R	14678576	2R_14678576_SNP [dm3] 2R_18791071_SNP [dm6]	C	A	3.851e^-4	0.869	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4461691	X_4461691_SNP [dm3] X_4567658_SNP [dm6]	G	A	3.863e^-4	0.869	INTRON CR32773
3L	15235256	3L_15235256_SNP [dm3] 3L_15242156_SNP [dm6]	C	A	3.863e^-4	0.869	UTR_3_PRIME Tollo	TF binding site mE1_TFBS_HSA
2R	8137696	2R_8137696_SNP [dm3] 2R_12250191_SNP [dm6]	A	T	3.866e^-4	0.869	INTERGENIC
2R	17607842	2R_17607842_SNP [dm3] 2R_21720337_SNP [dm6]	G	A	3.868e^-4	0.869	UPSTREAM LBR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2R	7410264	2R_7410264_SNP [dm3] 2R_11522759_SNP [dm6]	C	G	3.878e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	8448559	2L_8448559_SNP [dm3] 2L_8448559_SNP [dm6]	C	T	3.881e^-4	0.869	SYNONYMOUS_CODING U26
3L	11168344	3L_11168344_SNP [dm3] 3L_11175244_SNP [dm6]	T	C	3.886e^-4	0.869	INTRON CG14142	TF binding site mE1_TFBS_cad
3R	13124932	3R_13124932_SNP [dm3] 3R_17299210_SNP [dm6]	T	G	3.890e^-4	0.869	INTERGENIC
X	17262683	X_17262683_SNP [dm3] X_17368650_SNP [dm6]	G	A	3.891e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
3L	19050701	3L_19050701_SNP [dm3] 3L_19057601_SNP [dm6]	G	C	3.892e^-4	0.869	INTERGENIC
3L	1347835	3L_1347835_SNP [dm3] 3L_1347835_SNP [dm6]	G	A	3.896e^-4	0.869	INTRON Ptp61F	TF binding site BDTNP1_TFBS_prd
2R	7611065	2R_7611065_SNP [dm3] 2R_11723560_SNP [dm6]	A	G	3.908e^-4	0.869	INTRON pyr
3L	7721501	3L_7721501_SNP [dm3] 3L_7728401_SNP [dm6]	T	G	3.914e^-4	0.869	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
X	16443748	X_16443748_SNP [dm3] X_16549715_SNP [dm6]	A	G	3.919e^-4	0.869	SYNONYMOUS_CODING Arp2	TF binding site mE1_TFBS_sens
3L	15693061	3L_15693061_SNP [dm3] 3L_15699961_SNP [dm6]	C	T	3.923e^-4	0.869	UPSTREAM comm2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3131466	2L_3131466_SNP [dm3] 2L_3131466_SNP [dm6]	T	C	3.928e^-4	0.869	INTRON toc
3R	16035106	3R_16035106_SNP [dm3] 3R_20209384_SNP [dm6]	T	C	3.944e^-4	0.869	NON_SYNONYMOUS_CODING CG17199 INTRON Nlg4
3R	20316216	3R_20316216_DEL [dm3] 3R_24490494_DEL [dm6]	TT	T	3.965e^-4	0.869	INTRON nAChRalpha2
3L	712335	3L_712335_SNP [dm3] 3L_712335_SNP [dm6]	T	A	3.981e^-4	0.869	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	10694223	3L_10694223_SNP [dm3] 3L_10701123_SNP [dm6]	C	A	3.992e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10532404	2L_10532404_SNP [dm3] 2L_10532404_SNP [dm6]	T	C	3.997e^-4	0.869	SYNONYMOUS_CODING CG18301 DOWNSTREAM Lip4
2R	8136809	2R_8136809_SNP [dm3] 2R_12249304_SNP [dm6]	G	T	3.998e^-4	0.869	INTERGENIC
2L	12415089	2L_12415089_SNP [dm3] 2L_12415089_SNP [dm6]	G	A	4.010e^-4	0.869	INTRON vir-1
2R	21076580	2R_21076580_SNP [dm3] 2R_25189057_SNP [dm6]	C	T	4.014e^-4	0.869	UPSTREAM CG9380 INTRON CG9380
3R	10120953	3R_10120953_SNP [dm3] 3R_14295231_SNP [dm6]	T	C	4.018e^-4	0.869	INTRON CG12207
2L	19239640	2L_19239640_SNP [dm3] 2L_19239640_SNP [dm6]	A	T	4.021e^-4	0.869	INTERGENIC
2R	16340634	2R_16340634_SNP [dm3] 2R_20453129_SNP [dm6]	A	G	4.021e^-4	0.869	INTRON CG12484
3R	11459568	3R_11459568_SNP [dm3] 3R_15633846_SNP [dm6]	G	T	4.022e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	16239804	2L_16239804_SNP [dm3] 2L_16239804_SNP [dm6]	C	T	4.039e^-4	0.869	INTRON CG42817
2R	20309987	2R_20309987_SNP [dm3] 2R_24422464_SNP [dm6]	G	A	4.040e^-4	0.869	INTRON prom	TF binding site mE1_TFBS_chinmo
3R	9823760	3R_9823760_SNP [dm3] 3R_13998038_SNP [dm6]	T	C	4.040e^-4	0.869	INTRON rdx	TF binding site mE1_TFBS_HSA
2L	588419	2L_588419_SNP [dm3] 2L_588419_SNP [dm6]	T	A	4.045e^-4	0.869	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
2R	8366265	2R_8366265_SNP [dm3] 2R_12478760_SNP [dm6]	A	C	4.046e^-4	0.869	INTRON Dh44-R2
2L	6464065	2L_6464065_SNP [dm3] 2L_6464065_SNP [dm6]	A	C	4.046e^-4	0.869	UTR_5_PRIME CG16947	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	20731678	3L_20731678_SNP [dm3] 3L_20738578_SNP [dm6]	C	A	4.069e^-4	0.869	NON_SYNONYMOUS_CODING Gr77a INTRON CG13252
3L	6816322	3L_6816322_SNP [dm3] 3L_6823222_SNP [dm6]	G	A	4.070e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20077523	2L_20077523_SNP [dm3] 2L_20077523_SNP [dm6]	C	T	4.071e^-4	0.869	INTRON neb
2L	15155034	2L_15155034_SNP [dm3] 2L_15155034_SNP [dm6]	G	A	4.079e^-4	0.869	INTERGENIC
2L	9851017	2L_9851017_SNP [dm3] 2L_9851017_SNP [dm6]	T	G	4.082e^-4	0.869	INTRON nAChRalpha6
2L	4424389	2L_4424389_SNP [dm3] 2L_4424389_SNP [dm6]	G	A	4.086e^-4	0.869	INTRON CG15431
3L	10455532	3L_10455532_SNP [dm3] 3L_10462432_SNP [dm6]	A	T	4.088e^-4	0.869	SYNONYMOUS_CODING Gem3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25081773	3R_25081773_SNP [dm3] 3R_29256051_SNP [dm6]	T	C	4.098e^-4	0.869	UPSTREAM stg & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2L	8448070	2L_8448070_SNP [dm3] 2L_8448070_SNP [dm6]	C	T	4.099e^-4	0.869	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10868009	3L_10868009_SNP [dm3] 3L_10874909_SNP [dm6]	C	T	4.108e^-4	0.869	UTR_3_PRIME tna DOWNSTREAM tna	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9895271	3L_9895271_SNP [dm3] 3L_9902171_SNP [dm6]	G	A	4.108e^-4	0.869	NON_SYNONYMOUS_CODING nudE SYNONYMOUS_CODING nudE DOWNSTREAM nudE
3L	3143755	3L_3143755_INS [dm3] 3L_3143755_INS [dm6]	T	TT	4.112e^-4	0.869	UPSTREAM CG1291 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	3972263	2R_3972263_SNP [dm3] 2R_8084758_SNP [dm6]	C	A	4.113e^-4	0.869	NON_SYNONYMOUS_CODING sut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	27005488	3R_27005488_SNP [dm3] 3R_31179766_SNP [dm6]	A	G	4.119e^-4	0.869	UTR_3_PRIME mesh INTRON mesh	TF binding site mE1_TFBS_cad
3R	12383428	3R_12383428_SNP [dm3] 3R_16557706_SNP [dm6]	G	T	4.126e^-4	0.869	INTRON CG42342
2R	16869835	2R_16869835_SNP [dm3] 2R_20982330_SNP [dm6]	C	T	4.136e^-4	0.869	SYNONYMOUS_CODING CG9313	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	3063678	X_3063678_SNP [dm3] X_3169645_SNP [dm6]	T	G	4.138e^-4	0.869	INTRON N	TF binding site mE1_TFBS_chinmo
3R	11982358	3R_11982358_SNP [dm3] 3R_16156636_SNP [dm6]	A	G	4.139e^-4	0.869	INTRON CG6006
X	20218412	X_20218412_SNP [dm3] X_20347385_SNP [dm6]	T	A	4.141e^-4	0.869	INTERGENIC
3L	4840793	3L_4840793_SNP [dm3] 3L_4840793_SNP [dm6]	T	G	4.158e^-4	0.869	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	19715501	2L_19715501_SNP [dm3] 2L_19715501_SNP [dm6]	C	T	4.158e^-4	0.869	INTRON Lar	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3R	7334913	3R_7334913_SNP [dm3] 3R_11509191_SNP [dm6]	C	T	4.160e^-4	0.869	INTERGENIC
3R	7358010	3R_7358010_SNP [dm3] 3R_11532288_SNP [dm6]	C	A	4.160e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13549577	3L_13549577_SNP [dm3] 3L_13556477_SNP [dm6]	G	A	4.182e^-4	0.869	INTRON bru-3
3L	20739975	3L_20739975_SNP [dm3] 3L_20746875_SNP [dm6]	C	T	4.182e^-4	0.869	INTERGENIC
3R	26618205	3R_26618205_SNP [dm3] 3R_30792483_SNP [dm6]	C	T	4.183e^-4	0.869	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
3L	12287328	3L_12287328_SNP [dm3] 3L_12294228_SNP [dm6]	A	T	4.190e^-4	0.869	INTRON CG4328
2L	4512873	2L_4512873_SNP [dm3] 2L_4512873_SNP [dm6]	C	T	4.193e^-4	0.869	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4235722	X_4235722_SNP [dm3] X_4341689_SNP [dm6]	G	A	4.198e^-4	0.869	INTRON norpA
2R	13505970	2R_13505970_SNP [dm3] 2R_17618465_SNP [dm6]	C	A	4.199e^-4	0.869	UPSTREAM CG44403 INTRON CG10936
3L	22189332	3L_22189332_SNP [dm3] 3L_22196232_SNP [dm6]	T	A	4.207e^-4	0.869	INTRON olf413	TF binding site mE1_TFBS_HSA
3L	442004	3L_442004_SNP [dm3] 3L_442004_SNP [dm6]	G	A	4.209e^-4	0.869	UPSTREAM klar DOWNSTREAM klar INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
X	16800014	X_16800014_SNP [dm3] X_16905981_SNP [dm6]	C	G	4.220e^-4	0.869	EXON CR44754
2L	19853060	2L_19853060_SNP [dm3] 2L_19853060_SNP [dm6]	C	T	4.223e^-4	0.869	INTRON sick
2L	19930981	2L_19930981_SNP [dm3] 2L_19930981_SNP [dm6]	A	G	4.224e^-4	0.869	INTRON sick
X	20262267	X_20262267_SNP [dm3] X_20391240_SNP [dm6]	A	G	4.226e^-4	0.869	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14637789	2L_14637789_SNP [dm3] 2L_14637789_SNP [dm6]	G	A	4.228e^-4	0.869	INTRON osp
3L	6840407	3L_6840407_SNP [dm3] 3L_6847307_SNP [dm6]	T	A	4.230e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_inv
X	21371605	X_21371605_SNP [dm3] X_21500578_SNP [dm6]	T	G	4.230e^-4	0.869	INTRON CR45082
2L	7108561	2L_7108561_INS [dm3] 2L_7108561_INS [dm6]	A	ATA	4.237e^-4	0.869	INTRON Pvf3
3R	15767809	3R_15767809_SNP [dm3] 3R_19942087_SNP [dm6]	A	G	4.238e^-4	0.869	INTRON Hs6st
3L	5884780	3L_5884780_SNP [dm3] 3L_5891680_SNP [dm6]	T	G	4.239e^-4	0.869	INTERGENIC
2R	10963282	2R_10963282_SNP [dm3] 2R_15075777_SNP [dm6]	A	G	4.243e^-4	0.869	INTERGENIC
3R	4937413	3R_4937413_SNP [dm3] 3R_9111691_SNP [dm6]	G	A	4.245e^-4	0.869	INTRON pum
2R	18952468	2R_18952468_SNP [dm3] 2R_23064945_SNP [dm6]	C	G	4.261e^-4	0.869	SYNONYMOUS_CODING PPO3 UPSTREAM CG9890	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	13135298	X_13135298_SNP [dm3] X_13241265_SNP [dm6]	A	G	4.262e^-4	0.869	INTRON mew
2L	21906528	2L_21906528_SNP [dm3] 2L_21906528_SNP [dm6]	A	G	4.263e^-4	0.869	NON_SYNONYMOUS_CODING CG1428	TF binding site mE1_TFBS_cad
2R	13242775	2R_13242775_SNP [dm3] 2R_17355270_SNP [dm6]	A	C	4.278e^-4	0.869	INTRON mbl
3R	22249562	3R_22249562_SNP [dm3] 3R_26423840_SNP [dm6]	T	G	4.298e^-4	0.869	DOWNSTREAM CG6503 INTERGENIC
3R	15973654	3R_15973654_SNP [dm3] 3R_20147932_SNP [dm6]	G	C	4.302e^-4	0.869	INTERGENIC
X	5449042	X_5449042_SNP [dm3] X_5555009_SNP [dm6]	T	A	4.306e^-4	0.869	INTRON Vsx2	TF binding site mE1_TFBS_cnc
3R	3096981	3R_3096981_SNP [dm3] 3R_7271259_SNP [dm6]	A	G	4.309e^-4	0.869	UPSTREAM CG10032 DOWNSTREAM Syt4 INTERGENIC
3R	18914587	3R_18914587_SNP [dm3] 3R_23088865_SNP [dm6]	T	C	4.313e^-4	0.869	INTRON CG13830	TF binding site mE1_TFBS_cad
2L	4147037	2L_4147037_SNP [dm3] 2L_4147037_SNP [dm6]	A	T	4.317e^-4	0.869	INTERGENIC
2L	19941028	2L_19941028_SNP [dm3] 2L_19941028_SNP [dm6]	G	A	4.320e^-4	0.869	INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	20730754	3L_20730754_SNP [dm3] 3L_20737654_SNP [dm6]	A	G	4.321e^-4	0.869	SYNONYMOUS_CODING Gr77a INTRON CG13252
3R	8390929	3R_8390929_SNP [dm3] 3R_12565207_SNP [dm6]	T	C	4.328e^-4	0.869	INTRON Octbeta2R
3R	16035729	3R_16035729_SNP [dm3] 3R_20210007_SNP [dm6]	C	T	4.342e^-4	0.869	UPSTREAM CG17199 INTRON Nlg4
3R	27006630	3R_27006630_SNP [dm3] 3R_31180908_SNP [dm6]	A	T	4.342e^-4	0.869	INTRON mesh	TF binding site mE1_TFBS_cad
3L	11584053	3L_11584053_SNP [dm3] 3L_11590953_SNP [dm6]	T	C	4.345e^-4	0.869	SYNONYMOUS_CODING CG33268 DOWNSTREAM CG7377
2L	16511988	2L_16511988_SNP [dm3] 2L_16511988_SNP [dm6]	T	A	4.351e^-4	0.869	INTRON CG5953
2L	16239646	2L_16239646_SNP [dm3] 2L_16239646_SNP [dm6]	T	C	4.359e^-4	0.869	INTRON CG42817
X	5691157	X_5691157_DEL [dm3] X_5797124_DEL [dm6]	GCAAATGG	G	4.359e^-4	0.869	INTERGENIC
3L	8391746	3L_8391746_SNP [dm3] 3L_8398646_SNP [dm6]	C	A	4.368e^-4	0.869	INTRON CG7120
2L	1654030	2L_1654030_SNP [dm3] 2L_1654030_SNP [dm6]	G	A	4.375e^-4	0.869	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
3L	2813468	3L_2813468_SNP [dm3] 3L_2813468_SNP [dm6]	A	G	4.379e^-4	0.869	INTRON CG43444
3R	23652019	3R_23652019_SNP [dm3] 3R_27826297_SNP [dm6]	C	T	4.396e^-4	0.869	INTRON CG34353	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20862040	3L_20862040_SNP [dm3] 3L_20868940_SNP [dm6]	G	T	4.399e^-4	0.869	INTRON CG32432	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17353856	3R_17353856_SNP [dm3] 3R_21528134_SNP [dm6]	C	T	4.399e^-4	0.869	UTR_3_PRIME CG7956 DOWNSTREAM CG7956	TF binding site BDTNP1_TFBS_slp1
X	16690567	X_16690567_SNP [dm3] X_16796534_SNP [dm6]	T	G	4.409e^-4	0.869	UTR_3_PRIME CG4768 DOWNSTREAM CG9132 & 1 other
3L	11146537	3L_11146537_SNP [dm3] 3L_11153437_SNP [dm6]	G	T	4.412e^-4	0.869	INTRON CG32082
2L	6791732	2L_6791732_SNP [dm3] 2L_6791732_SNP [dm6]	G	T	4.415e^-4	0.869	SYNONYMOUS_CODING nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	14769026	X_14769026_SNP [dm3] X_14874993_SNP [dm6]	C	G	4.421e^-4	0.869	DOWNSTREAM CG45065 & 1 other INTRON Flo2
2R	17846134	2R_17846134_SNP [dm3] 2R_21958629_SNP [dm6]	C	G	4.425e^-4	0.869	INTERGENIC
3L	8362346	3L_8362346_SNP [dm3] 3L_8369246_SNP [dm6]	C	T	4.429e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	21990546	3R_21990546_SNP [dm3] 3R_26164824_SNP [dm6]	A	G	4.431e^-4	0.869	INTERGENIC
2R	18278806	2R_18278806_SNP [dm3] 2R_22391301_SNP [dm6]	A	G	4.435e^-4	0.869	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8546733	3L_8546733_SNP [dm3] 3L_8553633_SNP [dm6]	G	A	4.435e^-4	0.869	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11849735	2L_11849735_SNP [dm3] 2L_11849735_SNP [dm6]	A	G	4.447e^-4	0.869	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
3L	1604477	3L_1604477_SNP [dm3] 3L_1604477_SNP [dm6]	C	T	4.451e^-4	0.869	SYNONYMOUS_CODING CG18170 START_GAINED CG33791 UTR_5_PRIME CG33791 UPSTREAM CG33791
3R	13600672	3R_13600672_SNP [dm3] 3R_17774950_SNP [dm6]	C	T	4.460e^-4	0.869	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15213970	3R_15213970_SNP [dm3] 3R_19388248_SNP [dm6]	C	A	4.465e^-4	0.869	DOWNSTREAM CR34285 INTRON Ino80 & 1 other	TF binding site mE1_TFBS_sens
2L	22031469	2L_22031469_SNP [dm3] 2L_22031469_SNP [dm6]	A	G	4.468e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20115542	2R_20115542_SNP [dm3] 2R_24228019_SNP [dm6]	G	T	4.473e^-4	0.869	INTRON CG30419
X	8021067	X_8021067_SNP [dm3] X_8127034_SNP [dm6]	C	G	4.475e^-4	0.869	INTRON cyr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
3L	14816333	3L_14816333_SNP [dm3] 3L_14823233_SNP [dm6]	G	A	4.476e^-4	0.869	INTRON CG17839
3R	25119684	3R_25119684_SNP [dm3] 3R_29293962_SNP [dm6]	T	C	4.481e^-4	0.869	UTR_3_PRIME CG14506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	15411450	3L_15411450_SNP [dm3] 3L_15418350_SNP [dm6]	A	T	4.486e^-4	0.869	INTERGENIC
2L	16239654	2L_16239654_SNP [dm3] 2L_16239654_SNP [dm6]	T	C	4.492e^-4	0.869	INTRON CG42817
3L	10694292	3L_10694292_SNP [dm3] 3L_10701192_SNP [dm6]	G	C	4.500e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12764153	2R_12764153_SNP [dm3] 2R_16876648_SNP [dm6]	C	T	4.508e^-4	0.869	NON_SYNONYMOUS_CODING CG8910	TF binding site mE1_TFBS_chinmo
X	21160839	X_21160839_SNP [dm3] X_21289812_SNP [dm6]	T	C	4.511e^-4	0.869	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3264527	2R_3264527_SNP [dm3] 2R_7377022_SNP [dm6]	C	T	4.522e^-4	0.869	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3599987	2L_3599987_SNP [dm3] 2L_3599987_SNP [dm6]	T	A	4.524e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9429672	2L_9429672_SNP [dm3] 2L_9429672_SNP [dm6]	A	G	4.525e^-4	0.869	UTR_5_PRIME FucTB DOWNSTREAM CG42847 INTRON FucTB
3L	15413476	3L_15413476_SNP [dm3] 3L_15420376_SNP [dm6]	T	C	4.529e^-4	0.869	INTERGENIC
3R	4872435	3R_4872435_SNP [dm3] 3R_9046713_SNP [dm6]	G	A	4.530e^-4	0.869	SYNONYMOUS_CODING Rel INTRON Nmdmc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	8845501	2L_8845501_SNP [dm3] 2L_8845501_SNP [dm6]	T	C	4.532e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23980754	3R_23980754_SNP [dm3] 3R_28155032_SNP [dm6]	A	G	4.534e^-4	0.869	INTRON CG34354	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2R	11330036	2R_11330036_SNP [dm3] 2R_15442531_SNP [dm6]	G	C	4.535e^-4	0.869	INTRON CG43729
2R	18013906	2R_18013906_SNP [dm3] 2R_22126401_SNP [dm6]	A	G	4.537e^-4	0.869	SYNONYMOUS_CODING GM130	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1103387	3L_1103387_SNP [dm3] 3L_1103387_SNP [dm6]	C	T	4.538e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	10082495	2L_10082495_SNP [dm3] 2L_10082495_SNP [dm6]	G	A	4.538e^-4	0.869	INTRON CG44153
2L	9444160	2L_9444160_SNP [dm3] 2L_9444160_SNP [dm6]	T	A	4.542e^-4	0.869	INTRON numb
3R	6299522	3R_6299522_SNP [dm3] 3R_10473800_SNP [dm6]	C	T	4.551e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4932597	3R_4932597_SNP [dm3] 3R_9106875_SNP [dm6]	G	T	4.561e^-4	0.869	INTRON pum
2R	8378489	2R_8378489_SNP [dm3] 2R_12490984_SNP [dm6]	T	C	4.563e^-4	0.869	INTRON fdl
3R	9549091	3R_9549091_SNP [dm3] 3R_13723369_SNP [dm6]	T	A	4.568e^-4	0.869	INTRON CG34383
3R	4138430	3R_4138430_SNP [dm3] 3R_8312708_SNP [dm6]	A	T	4.572e^-4	0.869	SYNONYMOUS_CODING CG11698 UPSTREAM CG11694 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo
2R	16965216	2R_16965216_SNP [dm3] 2R_21077711_SNP [dm6]	A	C	4.584e^-4	0.869	INTRON Treh
2R	20312242	2R_20312242_SNP [dm3] 2R_24424719_SNP [dm6]	C	T	4.585e^-4	0.869	NON_SYNONYMOUS_CODING CG42383 INTRON prom	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	535760	3L_535760_SNP [dm3] 3L_535760_SNP [dm6]	G	T	4.586e^-4	0.869	INTRON klar	TF binding site mE1_TFBS_Trl
3R	2841430	3R_2841430_SNP [dm3] 3R_7015708_SNP [dm6]	T	G	4.594e^-4	0.869	INTERGENIC
2L	18859417	2L_18859417_SNP [dm3] 2L_18859417_SNP [dm6]	G	A	4.597e^-4	0.869	UPSTREAM mRpL13 & 1 other DOWNSTREAM tup INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
3L	18271525	3L_18271525_SNP [dm3] 3L_18278425_SNP [dm6]	T	A	4.599e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	13251119	2R_13251119_SNP [dm3] 2R_17363614_SNP [dm6]	T	C	4.599e^-4	0.869	SYNONYMOUS_CODING mbl INTRON mbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19495062	3L_19495062_SNP [dm3] 3L_19501962_SNP [dm6]	T	A	4.601e^-4	0.869	SYNONYMOUS_CODING CG9452
2L	7100403	2L_7100403_SNP [dm3] 2L_7100403_SNP [dm6]	G	A	4.606e^-4	0.869	SYNONYMOUS_CODING Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	22141543	3R_22141543_SNP [dm3] 3R_26315821_SNP [dm6]	T	A	4.608e^-4	0.869	INTERGENIC
2L	6226800	2L_6226800_SNP [dm3] 2L_6226800_SNP [dm6]	T	A	4.608e^-4	0.869	UTR_3_PRIME Ugt37b1
3R	11464738	3R_11464738_INS [dm3] 3R_15639016_INS [dm6]	T	TTAGTTAATATTTTCAA...	4.610e^-4	0.869	DOWNSTREAM CG43336 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	11464743	3R_11464743_INS [dm3] 3R_15639021_INS [dm6]	A	AAACACAACTATAGTGAATT...	4.610e^-4	0.869	DOWNSTREAM CG43336 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	391927	3L_391927_INS [dm3] 3L_391927_INS [dm6]	A	AATTGGAT	4.635e^-4	0.869	DOWNSTREAM CR45378 INTRON trh
2R	3254555	2R_3254555_SNP [dm3] 2R_7367050_SNP [dm6]	T	A	4.635e^-4	0.869	INTRON Dscam1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16227578	2R_16227578_SNP [dm3] 2R_20340073_SNP [dm6]	C	A	4.638e^-4	0.869	INTERGENIC
3R	18109021	3R_18109021_SNP [dm3] 3R_22283299_SNP [dm6]	T	A	4.639e^-4	0.869	INTRON SKIP
3R	10364938	3R_10364938_SNP [dm3] 3R_14539216_SNP [dm6]	G	T	4.647e^-4	0.869	INTRON Pde6
3R	3948645	3R_3948645_SNP [dm3] 3R_8122923_SNP [dm6]	C	T	4.647e^-4	0.869	NON_SYNONYMOUS_CODING CG7878 DOWNSTREAM puc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17920188	2R_17920188_DEL [dm3] 2R_22032683_DEL [dm6]	GGGCTGG	G	4.650e^-4	0.869	INTRON CG34370
3R	10436834	3R_10436834_SNP [dm3] 3R_14611112_SNP [dm6]	G	A	4.652e^-4	0.869	INTRON CG14853
3R	12702744	3R_12702744_SNP [dm3] 3R_16877022_SNP [dm6]	C	A	4.655e^-4	0.869	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	16726889	3L_16726889_SNP [dm3] 3L_16733789_SNP [dm6]	G	T	4.674e^-4	0.869	SYNONYMOUS_CODING CG9701
2R	2346665	2R_2346665_INS [dm3] 2R_6459160_INS [dm6]	T	TCAC	4.679e^-4	0.869	INTERGENIC	transposable element FlyBase
2L	19079203	2L_19079203_SNP [dm3] 2L_19079203_SNP [dm6]	C	T	4.688e^-4	0.869	UPSTREAM CG10700 DOWNSTREAM Lim3 INTERGENIC
2L	8763784	2L_8763784_SNP [dm3] 2L_8763784_SNP [dm6]	T	G	4.694e^-4	0.869	INTERGENIC
X	5337726	X_5337726_SNP [dm3] X_5443693_SNP [dm6]	C	G	4.726e^-4	0.869	INTERGENIC
3R	11464735	3R_11464735_SNP [dm3] 3R_15639013_SNP [dm6]	T	A	4.726e^-4	0.869	DOWNSTREAM CG43336 INTERGENIC	TF binding site BDTNP1_TFBS_da
X	8042792	X_8042792_SNP [dm3] X_8148759_SNP [dm6]	G	A	4.727e^-4	0.869	UPSTREAM CG10959 DOWNSTREAM CG2129 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	25765336	3R_25765336_SNP [dm3] 3R_29939614_SNP [dm6]	T	C	4.728e^-4	0.869	SYNONYMOUS_CODING CG15523
3R	14221044	3R_14221044_SNP [dm3] 3R_18395322_SNP [dm6]	T	G	4.730e^-4	0.869	INTRON Vha100-2
3L	7480667	3L_7480667_SNP [dm3] 3L_7487567_SNP [dm6]	A	G	4.732e^-4	0.869	SYNONYMOUS_CODING mthl6
3L	14672545	3L_14672545_SNP [dm3] 3L_14679445_SNP [dm6]	T	G	4.735e^-4	0.869	INTRON ome
3L	16325276	3L_16325276_SNP [dm3] 3L_16332176_SNP [dm6]	C	T	4.738e^-4	0.869	SYNONYMOUS_CODING retinin DOWNSTREAM CG33061 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18014339	2R_18014339_SNP [dm3] 2R_22126834_SNP [dm6]	A	G	4.745e^-4	0.869	NON_SYNONYMOUS_CODING GM130 UPSTREAM NtR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	16187579	3L_16187579_SNP [dm3] 3L_16194479_SNP [dm6]	C	A	4.760e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_cad
2L	8066765	2L_8066765_SNP [dm3] 2L_8066765_SNP [dm6]	A	G	4.765e^-4	0.869	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad
2R	19117744	2R_19117744_SNP [dm3] 2R_23230221_SNP [dm6]	A	G	4.765e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19117745	2R_19117745_SNP [dm3] 2R_23230222_SNP [dm6]	G	T	4.765e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4512900	2L_4512900_SNP [dm3] 2L_4512900_SNP [dm6]	C	T	4.766e^-4	0.869	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9983616	3L_9983616_SNP [dm3] 3L_9990516_SNP [dm6]	T	A	4.770e^-4	0.869	INTRON dpr6
3R	19235794	3R_19235794_SNP [dm3] 3R_23410072_SNP [dm6]	G	T	4.771e^-4	0.869	UTR_3_PRIME CG4374	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6017234	2R_6017234_SNP [dm3] 2R_10129729_SNP [dm6]	T	C	4.771e^-4	0.869	INTRON gem
2L	14871517	2L_14871517_INS [dm3] 2L_14871517_INS [dm6]	A	AC	4.778e^-4	0.869	INTRON CG4480
3R	23587733	3R_23587733_SNP [dm3] 3R_27762011_SNP [dm6]	A	G	4.780e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	19024797	2R_19024797_SNP [dm3] 2R_23137274_SNP [dm6]	C	T	4.780e^-4	0.869	INTERGENIC
2L	10536105	2L_10536105_SNP [dm3] 2L_10536105_SNP [dm6]	A	G	4.780e^-4	0.869	SYNONYMOUS_CODING CG18302
3R	16035457	3R_16035457_SNP [dm3] 3R_20209735_SNP [dm6]	G	T	4.788e^-4	0.869	UTR_5_PRIME CG17199 INTRON Nlg4
3L	18850140	3L_18850140_SNP [dm3] 3L_18857040_SNP [dm6]	G	A	4.791e^-4	0.869	EXON CR45388
3R	25655102	3R_25655102_SNP [dm3] 3R_29829380_SNP [dm6]	G	A	4.795e^-4	0.869	INTRON Atg16	enhancer mE1_CBP_Enhancers TF binding site mE1_TFBS_Trl
2R	20211874	2R_20211874_SNP [dm3] 2R_24324351_SNP [dm6]	A	C	4.804e^-4	0.869	UPSTREAM CR44810 INTERGENIC
3R	7988198	3R_7988198_SNP [dm3] 3R_12162476_SNP [dm6]	G	A	4.808e^-4	0.869	DOWNSTREAM Cpn INTERGENIC
3L	9257504	3L_9257504_SNP [dm3] 3L_9264404_SNP [dm6]	T	G	4.811e^-4	0.869	INTRON GluRIB
3L	20809699	3L_20809699_INS [dm3] 3L_20816599_INS [dm6]	T	TCTC	4.817e^-4	0.869	UTR_5_PRIME Pka-R1 UPSTREAM CG3618 DOWNSTREAM Mst77F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19551102	X_19551102_SNP [dm3] X_19657069_SNP [dm6]	C	T	4.822e^-4	0.869	NON_SYNONYMOUS_CODING CG14215	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10264877	3L_10264877_SNP [dm3] 3L_10271777_SNP [dm6]	G	A	4.823e^-4	0.869	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	3802916	X_3802916_SNP [dm3] X_3908883_SNP [dm6]	G	A	4.826e^-4	0.869	INTRON CG42541
X	2696965	X_2696965_SNP [dm3] X_2802932_SNP [dm6]	T	A	4.830e^-4	0.869	INTRON kirre
2L	13875778	2L_13875778_SNP [dm3] 2L_13875778_SNP [dm6]	G	T	4.834e^-4	0.869	INTRON CenG1A
2R	16864990	2R_16864990_SNP [dm3] 2R_20977485_SNP [dm6]	G	T	4.834e^-4	0.869	UTR_3_PRIME CG9344 DOWNSTREAM CG15650 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	20737662	3L_20737662_SNP [dm3] 3L_20744562_SNP [dm6]	G	C	4.841e^-4	0.869	DOWNSTREAM CG13252 INTERGENIC
3L	1604475	3L_1604475_SNP [dm3] 3L_1604475_SNP [dm6]	C	T	4.847e^-4	0.869	NON_SYNONYMOUS_CODING CG18170 UTR_5_PRIME CG33791 UPSTREAM CG33791
3R	4401213	3R_4401213_SNP [dm3] 3R_8575491_SNP [dm6]	G	A	4.849e^-4	0.869	INTERGENIC
2L	11849725	2L_11849725_SNP [dm3] 2L_11849725_SNP [dm6]	A	G	4.851e^-4	0.869	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
3R	4786260	3R_4786260_SNP [dm3] 3R_8960538_SNP [dm6]	A	G	4.862e^-4	0.869	INTRON CG11966
3L	7257447	3L_7257447_SNP [dm3] 3L_7264347_SNP [dm6]	T	G	4.873e^-4	0.869	UPSTREAM CG14830 INTERGENIC	TF binding site mE1_TFBS_HSA
X	20218360	X_20218360_SNP [dm3] X_20347333_SNP [dm6]	C	A	4.875e^-4	0.869	INTERGENIC
3L	10694245	3L_10694245_SNP [dm3] 3L_10701145_SNP [dm6]	G	A	4.876e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14694738	3L_14694738_SNP [dm3] 3L_14701638_SNP [dm6]	A	G	4.880e^-4	0.869	NON_SYNONYMOUS_CODING CG17177 INTRON ome
3R	25759471	3R_25759471_SNP [dm3] 3R_29933749_SNP [dm6]	T	A	4.885e^-4	0.869	SYNONYMOUS_CODING CG42557 UTR_5_PRIME CG42558 UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	2310890	X_2310890_SNP [dm3] X_2416857_SNP [dm6]	C	G	4.886e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	22141451	3R_22141451_SNP [dm3] 3R_26315729_SNP [dm6]	C	T	4.889e^-4	0.869	INTERGENIC
2L	18652002	2L_18652002_SNP [dm3] 2L_18652002_SNP [dm6]	A	G	4.892e^-4	0.869	INTRON MESR3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14410434	3L_14410434_SNP [dm3] 3L_14417334_SNP [dm6]	G	A	4.904e^-4	0.869	INTRON bbg
2L	19940949	2L_19940949_SNP [dm3] 2L_19940949_SNP [dm6]	A	T	4.905e^-4	0.869	INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17920187	2R_17920187_SNP [dm3] 2R_22032682_SNP [dm6]	G	T	4.915e^-4	0.869	INTRON CG34370
3R	5991545	3R_5991545_SNP [dm3] 3R_10165823_SNP [dm6]	T	G	4.917e^-4	0.869	INTRON Best1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13735512	2L_13735512_SNP [dm3] 2L_13735512_SNP [dm6]	T	A	4.927e^-4	0.869	UPSTREAM CG31813 INTERGENIC
2L	20998639	2L_20998639_SNP [dm3] 2L_20998639_SNP [dm6]	C	T	4.928e^-4	0.869	INTRON CG42238	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2L	1046273	2L_1046273_SNP [dm3] 2L_1046273_SNP [dm6]	G	A	4.936e^-4	0.869	INTRON IA-2
3L	16164508	3L_16164508_SNP [dm3] 3L_16171408_SNP [dm6]	G	A	4.937e^-4	0.869	UPSTREAM CG33795 INTERGENIC
3L	16164516	3L_16164516_SNP [dm3] 3L_16171416_SNP [dm6]	A	G	4.937e^-4	0.869	UPSTREAM CG33795 INTERGENIC
3R	14523591	3R_14523591_SNP [dm3] 3R_18697869_SNP [dm6]	T	C	4.938e^-4	0.869	INTERGENIC
2L	1183507	2L_1183507_SNP [dm3] 2L_1183507_SNP [dm6]	A	G	4.941e^-4	0.869	UPSTREAM Tgt INTRON CG5126	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20404418	2L_20404418_SNP [dm3] 2L_20404418_SNP [dm6]	G	A	4.942e^-4	0.869	INTRON CG10947
3L	14415161	3L_14415161_SNP [dm3] 3L_14422061_SNP [dm6]	G	T	4.945e^-4	0.869	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5709131	3R_5709131_SNP [dm3] 3R_9883409_SNP [dm6]	C	G	4.946e^-4	0.869	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6421061	2L_6421061_SNP [dm3] 2L_6421061_SNP [dm6]	C	G	4.946e^-4	0.869	NON_SYNONYMOUS_CODING Tig	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	11121667	X_11121667_SNP [dm3] X_11227634_SNP [dm6]	T	C	4.949e^-4	0.869	INTRON CG44422
2L	5414889	2L_5414889_SNP [dm3] 2L_5414889_SNP [dm6]	A	G	4.949e^-4	0.869	INTRON H15	TF binding site mE1_TFBS_cad
2L	2922161	2L_2922161_SNP [dm3] 2L_2922161_SNP [dm6]	T	A	4.952e^-4	0.869	INTRON lilli
3R	24831488	3R_24831488_SNP [dm3] 3R_29005766_SNP [dm6]	T	C	4.955e^-4	0.869	INTRON wat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10695984	3R_10695984_SNP [dm3] 3R_14870262_SNP [dm6]	G	A	4.956e^-4	0.869	INTRON btsz

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.544e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.04157

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	8.2735	0.016

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1942 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	6253276	3R_6253276_SNP [dm3] 3R_10427554_SNP [dm6]	G	A	3.195e^-6	0.924	INTERGENIC
2L	6463898	2L_6463898_SNP [dm3] 2L_6463898_SNP [dm6]	A	T	5.230e^-6	0.924	UTR_5_PRIME CG16947	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	16861770	2R_16861770_SNP [dm3] 2R_20974265_SNP [dm6]	T	A	5.762e^-6	0.924	UPSTREAM CG15649 INTERGENIC
3L	5886015	3L_5886015_SNP [dm3] 3L_5892915_SNP [dm6]	C	G	7.419e^-6	0.924	INTERGENIC
X	15135579	X_15135579_DEL [dm3] X_15241546_DEL [dm6]	ATA	A	7.897e^-6	0.924	INTERGENIC
3R	12383449	3R_12383449_SNP [dm3] 3R_16557727_SNP [dm6]	T	C	8.595e^-6	0.924	INTRON CG42342
X	15135576	X_15135576_SNP [dm3] X_15241543_SNP [dm6]	T	G	8.923e^-6	0.924	INTERGENIC
3R	6253307	3R_6253307_SNP [dm3] 3R_10427585_SNP [dm6]	G	T	9.275e^-6	0.924	INTERGENIC
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	9.877e^-6	0.924	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
3L	7777439	3L_7777439_SNP [dm3] 3L_7784339_SNP [dm6]	C	T	1.241e^-5	0.924	INTRON CG32369
3L	4533938	3L_4533938_SNP [dm3] 3L_4533938_SNP [dm6]	A	C	1.249e^-5	0.924	INTRON CG11353
3L	10264888	3L_10264888_SNP [dm3] 3L_10271788_SNP [dm6]	C	A	1.384e^-5	0.924	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8370140	2L_8370140_SNP [dm3] 2L_8370140_SNP [dm6]	C	T	1.421e^-5	0.924	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
2R	10925619	2R_10925619_SNP [dm3] 2R_15038114_SNP [dm6]	A	G	1.484e^-5	0.924	INTRON hbs
X	21063578	X_21063578_SNP [dm3] X_21192551_SNP [dm6]	G	A	1.486e^-5	0.924	UPSTREAM CG14579 INTERGENIC
2L	18871879	2L_18871879_SNP [dm3] 2L_18871879_SNP [dm6]	C	T	1.525e^-5	0.924	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20995023	3R_20995023_SNP [dm3] 3R_25169301_SNP [dm6]	C	G	1.558e^-5	0.924	DOWNSTREAM lobo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14057292	3L_14057292_SNP [dm3] 3L_14064192_SNP [dm6]	C	T	1.581e^-5	0.924	INTRON CG32138	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	3439088	2L_3439088_SNP [dm3] 2L_3439088_SNP [dm6]	T	G	1.686e^-5	0.924	INTERGENIC
X	6477081	X_6477081_SNP [dm3] X_6583048_SNP [dm6]	G	T	1.883e^-5	0.924	SYNONYMOUS_CODING CG34417 INTRON CG34417
3R	19769844	3R_19769844_SNP [dm3] 3R_23944122_SNP [dm6]	C	T	2.078e^-5	0.924	INTRON CG12268	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9430498	2L_9430498_SNP [dm3] 2L_9430498_SNP [dm6]	T	A	2.190e^-5	0.924	UPSTREAM FucTB & 1 other INTRON FucTB
3L	15206488	3L_15206488_SNP [dm3] 3L_15213388_SNP [dm6]	G	T	2.232e^-5	0.924	INTERGENIC
2R	20946369	2R_20946369_SNP [dm3] 2R_25058846_SNP [dm6]	C	T	2.242e^-5	0.924	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3L	7291366	3L_7291366_SNP [dm3] 3L_7298266_SNP [dm6]	G	C	2.322e^-5	0.924	INTRON unc-13-4A
3R	4400876	3R_4400876_INS [dm3] 3R_8575154_INS [dm6]	T	TT	2.414e^-5	0.924	INTERGENIC
2R	17882939	2R_17882939_SNP [dm3] 2R_21995434_SNP [dm6]	T	C	2.453e^-5	0.924	INTRON CG34370	TF binding site mE1_TFBS_inv
2R	7045208	2R_7045208_SNP [dm3] 2R_11157703_SNP [dm6]	C	A	2.506e^-5	0.924	INTRON CG13229
2L	8370138	2L_8370138_SNP [dm3] 2L_8370138_SNP [dm6]	C	G	2.538e^-5	0.924	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
X	14756956	X_14756956_SNP [dm3] X_14862923_SNP [dm6]	A	C	2.639e^-5	0.924	DOWNSTREAM CG9518 INTRON Flo2
3R	5145048	3R_5145048_SNP [dm3] 3R_9319326_SNP [dm6]	G	A	2.648e^-5	0.924	INTRON CG8861
3R	21991489	3R_21991489_SNP [dm3] 3R_26165767_SNP [dm6]	A	T	2.728e^-5	0.924	INTERGENIC
X	15135604	X_15135604_SNP [dm3] X_15241571_SNP [dm6]	G	T	2.771e^-5	0.924	INTERGENIC
2L	8370098	2L_8370098_SNP [dm3] 2L_8370098_SNP [dm6]	A	T	2.833e^-5	0.924	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
2R	11330066	2R_11330066_SNP [dm3] 2R_15442561_SNP [dm6]	G	T	2.881e^-5	0.924	INTRON CG43729
3R	25760016	3R_25760016_SNP [dm3] 3R_29934294_SNP [dm6]	A	C	2.913e^-5	0.924	NON_SYNONYMOUS_CODING CG42558 UTR_3_PRIME CG42557 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad
3R	25759599	3R_25759599_SNP [dm3] 3R_29933877_SNP [dm6]	C	T	2.964e^-5	0.924	NON_SYNONYMOUS_CODING CG42557 START_GAINED CG42558 UTR_5_PRIME CG42558 UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	2868311	3R_2868311_INS [dm3] 3R_7042589_INS [dm6]	C	CGGA	3.076e^-5	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	11330036	2R_11330036_SNP [dm3] 2R_15442531_SNP [dm6]	G	C	3.126e^-5	0.924	INTRON CG43729
2L	5544938	2L_5544938_SNP [dm3] 2L_5544938_SNP [dm6]	A	T	3.178e^-5	0.924	SYNONYMOUS_CODING Lam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	11849869	2L_11849869_DEL [dm3] 2L_11849869_DEL [dm6]	TTTTA	G	3.180e^-5	0.924	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
3L	16164508	3L_16164508_SNP [dm3] 3L_16171408_SNP [dm6]	G	A	3.210e^-5	0.924	UPSTREAM CG33795 INTERGENIC
3L	16164516	3L_16164516_SNP [dm3] 3L_16171416_SNP [dm6]	A	G	3.210e^-5	0.924	UPSTREAM CG33795 INTERGENIC
3R	7282901	3R_7282901_SNP [dm3] 3R_11457179_SNP [dm6]	T	C	3.224e^-5	0.924	INTRON CG17230 & 1 other
3R	25753160	3R_25753160_SNP [dm3] 3R_29927438_SNP [dm6]	T	C	3.240e^-5	0.924	UTR_5_PRIME CG15522
2R	10925628	2R_10925628_SNP [dm3] 2R_15038123_SNP [dm6]	C	T	3.331e^-5	0.924	INTRON hbs
3R	19769710	3R_19769710_SNP [dm3] 3R_23943988_SNP [dm6]	G	A	3.371e^-5	0.924	SYNONYMOUS_CODING CG12268 UPSTREAM Gdh	TF binding site mE1_TFBS_cad
3R	4341488	3R_4341488_SNP [dm3] 3R_8515766_SNP [dm6]	G	A	3.421e^-5	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	21802210	2L_21802210_SNP [dm3] 2L_21802210_SNP [dm6]	G	A	3.443e^-5	0.924	INTERGENIC
3R	4877339	3R_4877339_SNP [dm3] 3R_9051617_SNP [dm6]	C	T	3.463e^-5	0.924	NON_SYNONYMOUS_CODING Mst85C UPSTREAM Kdm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	15213950	3R_15213950_SNP [dm3] 3R_19388228_SNP [dm6]	G	A	3.484e^-5	0.924	DOWNSTREAM CR34285 INTRON Ino80 & 1 other	TF binding site mE1_TFBS_sens
3R	4853912	3R_4853912_SNP [dm3] 3R_9028190_SNP [dm6]	C	T	3.528e^-5	0.924	INTRON neur	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4863020	3R_4863020_SNP [dm3] 3R_9037298_SNP [dm6]	C	T	3.596e^-5	0.924	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8370131	2L_8370131_SNP [dm3] 2L_8370131_SNP [dm6]	T	A	3.613e^-5	0.924	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
2L	20128377	2L_20128377_SNP [dm3] 2L_20128377_SNP [dm6]	C	T	3.687e^-5	0.924	INTERGENIC
2R	11330161	2R_11330161_SNP [dm3] 2R_15442656_SNP [dm6]	G	A	3.693e^-5	0.924	INTRON CG43729
2L	15192354	2L_15192354_SNP [dm3] 2L_15192354_SNP [dm6]	C	T	3.711e^-5	0.924	INTRON CG4168
3R	12383420	3R_12383420_SNP [dm3] 3R_16557698_SNP [dm6]	G	C	3.781e^-5	0.924	INTRON CG42342
3R	6253280	3R_6253280_SNP [dm3] 3R_10427558_SNP [dm6]	T	A	3.853e^-5	0.924	INTERGENIC
2L	4364449	2L_4364449_SNP [dm3] 2L_4364449_SNP [dm6]	T	A	4.048e^-5	0.924	UPSTREAM CR45363 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15767069	3R_15767069_SNP [dm3] 3R_19941347_SNP [dm6]	G	A	4.081e^-5	0.924	INTRON Hs6st
2R	11251263	2R_11251263_SNP [dm3] 2R_15363758_SNP [dm6]	T	A	4.087e^-5	0.924	INTRON unc-5
2R	8378489	2R_8378489_SNP [dm3] 2R_12490984_SNP [dm6]	T	C	4.118e^-5	0.924	INTRON fdl
X	5452736	X_5452736_SNP [dm3] X_5558703_SNP [dm6]	C	T	4.313e^-5	0.924	INTRON Vsx2
X	5120460	X_5120460_SNP [dm3] X_5226427_SNP [dm6]	A	G	4.373e^-5	0.924	INTRON CG15465 & 1 other
3L	12147115	3L_12147115_SNP [dm3] 3L_12154015_SNP [dm6]	T	C	4.458e^-5	0.924	SYNONYMOUS_CODING Nrx-IV
3L	8391972	3L_8391972_SNP [dm3] 3L_8398872_SNP [dm6]	A	T	4.537e^-5	0.924	INTRON CG7120
3L	19472074	3L_19472074_SNP [dm3] 3L_19478974_SNP [dm6]	G	A	4.677e^-5	0.924	UPSTREAM CR32207 DOWNSTREAM CR42842 INTERGENIC
2L	18871899	2L_18871899_SNP [dm3] 2L_18871899_SNP [dm6]	T	C	4.682e^-5	0.924	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8391974	3L_8391974_SNP [dm3] 3L_8398874_SNP [dm6]	G	A	4.746e^-5	0.924	INTRON CG7120
3R	8486852	3R_8486852_SNP [dm3] 3R_12661130_SNP [dm6]	C	T	4.891e^-5	0.924	DOWNSTREAM CR45586 & 1 other INTERGENIC
3R	4864390	3R_4864390_SNP [dm3] 3R_9038668_SNP [dm6]	T	C	4.943e^-5	0.924	UPSTREAM hyx INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	11330408	2R_11330408_SNP [dm3] 2R_15442903_SNP [dm6]	C	T	4.955e^-5	0.924	INTRON CG43729
2L	11849740	2L_11849740_SNP [dm3] 2L_11849740_SNP [dm6]	A	G	5.024e^-5	0.924	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
2R	20309987	2R_20309987_SNP [dm3] 2R_24422464_SNP [dm6]	G	A	5.068e^-5	0.924	INTRON prom	TF binding site mE1_TFBS_chinmo
3R	11464759	3R_11464759_SNP [dm3] 3R_15639037_SNP [dm6]	C	T	5.181e^-5	0.924	DOWNSTREAM CG43336 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	14555445	3L_14555445_SNP [dm3] 3L_14562345_SNP [dm6]	A	T	5.235e^-5	0.924	INTRON CG34039	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
3L	2171647	3L_2171647_SNP [dm3] 3L_2171647_SNP [dm6]	A	G	5.333e^-5	0.924	UPSTREAM CG5704 EXON CR15821
3R	25799122	3R_25799122_SNP [dm3] 3R_29973400_SNP [dm6]	G	C	5.360e^-5	0.924	INTERGENIC
3L	7480667	3L_7480667_SNP [dm3] 3L_7487567_SNP [dm6]	A	G	5.424e^-5	0.924	SYNONYMOUS_CODING mthl6
3L	20924804	3L_20924804_SNP [dm3] 3L_20931704_SNP [dm6]	T	C	5.596e^-5	0.924	INTRON fng	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2926031	X_2926031_SNP [dm3] X_3031998_SNP [dm6]	C	A	5.615e^-5	0.924	INTRON kirre
2R	17637018	2R_17637018_SNP [dm3] 2R_21749513_SNP [dm6]	C	T	5.645e^-5	0.924	INTERGENIC
2R	9131489	2R_9131489_SNP [dm3] 2R_13243984_SNP [dm6]	G	T	5.753e^-5	0.924	DOWNSTREAM CR45278 INTERGENIC
3R	6253304	3R_6253304_SNP [dm3] 3R_10427582_SNP [dm6]	C	A	5.804e^-5	0.924	INTERGENIC
2R	6606992	2R_6606992_SNP [dm3] 2R_10719487_SNP [dm6]	A	T	5.817e^-5	0.924	INTRON stan
2R	14678389	2R_14678389_SNP [dm3] 2R_18790884_SNP [dm6]	C	A	5.843e^-5	0.924	NON_SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19963263	2R_19963263_SNP [dm3] 2R_24075740_SNP [dm6]	A	C	6.011e^-5	0.924	UTR_3_PRIME Mlp60A DOWNSTREAM Mlp60A INTRON Mlp60A
3L	1066558	3L_1066558_SNP [dm3] 3L_1066558_SNP [dm6]	C	G	6.080e^-5	0.924	INTRON bab1
2L	3126389	2L_3126389_SNP [dm3] 2L_3126389_SNP [dm6]	C	T	6.112e^-5	0.924	NON_SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	6.179e^-5	0.924	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12116819	2R_12116819_SNP [dm3] 2R_16229314_SNP [dm6]	A	G	6.265e^-5	0.924	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9131327	2R_9131327_SNP [dm3] 2R_13243822_SNP [dm6]	G	A	6.294e^-5	0.924	DOWNSTREAM CR45278 INTERGENIC
3R	18478641	3R_18478641_SNP [dm3] 3R_22652919_SNP [dm6]	G	T	6.306e^-5	0.924	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4932590	3R_4932590_SNP [dm3] 3R_9106868_SNP [dm6]	C	T	6.367e^-5	0.924	INTRON pum
3L	11847833	3L_11847833_SNP [dm3] 3L_11854733_SNP [dm6]	G	T	6.378e^-5	0.924	SYNONYMOUS_CODING CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12815795	3L_12815795_SNP [dm3] 3L_12822695_SNP [dm6]	A	G	6.393e^-5	0.924	INTRON CG42588
2L	11849745	2L_11849745_SNP [dm3] 2L_11849745_SNP [dm6]	G	A	6.466e^-5	0.924	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
2R	11849590	2R_11849590_SNP [dm3] 2R_15962085_SNP [dm6]	T	G	6.644e^-5	0.924	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18858630	2L_18858630_DEL [dm3] 2L_18858630_DEL [dm6]	AATCGGCGACCAT...	A	6.753e^-5	0.924	UPSTREAM CG10602 DOWNSTREAM tup INTRON CG10602 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
2R	16861864	2R_16861864_SNP [dm3] 2R_20974359_SNP [dm6]	G	C	6.792e^-5	0.924	UPSTREAM CG15649 INTERGENIC
X	14042362	X_14042362_SNP [dm3] X_14148329_SNP [dm6]	A	G	6.937e^-5	0.924	INTERGENIC
3L	11599845	3L_11599845_SNP [dm3] 3L_11606745_SNP [dm6]	T	C	6.962e^-5	0.924	SYNONYMOUS_CODING CG6091
3R	4889869	3R_4889869_SNP [dm3] 3R_9064147_SNP [dm6]	C	T	7.044e^-5	0.924	SYNONYMOUS_CODING beag DOWNSTREAM Kdm2	TF binding site mE1_TFBS_sens
3R	4892170	3R_4892170_SNP [dm3] 3R_9066448_SNP [dm6]	T	G	7.044e^-5	0.924	UTR_3_PRIME pum DOWNSTREAM Ada
2R	6873237	2R_6873237_SNP [dm3] 2R_10985732_SNP [dm6]	C	A	7.077e^-5	0.924	INTRON luna
3L	12815785	3L_12815785_SNP [dm3] 3L_12822685_SNP [dm6]	C	T	7.086e^-5	0.924	INTRON CG42588
3L	7291341	3L_7291341_DEL [dm3] 3L_7298241_DEL [dm6]	GG	G	7.158e^-5	0.924	INTRON unc-13-4A
2L	2863927	2L_2863927_SNP [dm3] 2L_2863927_SNP [dm6]	C	T	7.214e^-5	0.924	INTRON CG2991	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2687377	3L_2687377_SNP [dm3] 3L_2687377_SNP [dm6]	C	A	7.247e^-5	0.924	INTRON Fife
X	6477066	X_6477066_SNP [dm3] X_6583033_SNP [dm6]	A	G	7.310e^-5	0.924	SYNONYMOUS_CODING CG34417 INTRON CG34417
3L	14931260	3L_14931260_SNP [dm3] 3L_14938160_SNP [dm6]	G	C	7.358e^-5	0.924	INTRON DCX-EMAP
2L	4144537	2L_4144537_SNP [dm3] 2L_4144537_SNP [dm6]	T	G	7.383e^-5	0.924	INTERGENIC
3L	1352726	3L_1352726_SNP [dm3] 3L_1352726_SNP [dm6]	A	G	7.383e^-5	0.924	UTR_3_PRIME 312 DOWNSTREAM 312 INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2L	18871861	2L_18871861_SNP [dm3] 2L_18871861_SNP [dm6]	G	A	7.407e^-5	0.924	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9125310	2L_9125310_SNP [dm3] 2L_9125310_SNP [dm6]	G	A	7.408e^-5	0.924	UPSTREAM CG32982 DOWNSTREAM CR44615 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
X	4865876	X_4865876_DEL [dm3] X_4971843_DEL [dm6]	ATATATATATATATAT...	A	7.426e^-5	0.924	INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	2279895	2L_2279895_SNP [dm3] 2L_2279895_SNP [dm6]	G	A	7.461e^-5	0.924	UPSTREAM CR43753 INTERGENIC
3L	11168317	3L_11168317_SNP [dm3] 3L_11175217_SNP [dm6]	A	T	7.586e^-5	0.924	INTRON CG14142
3L	14813948	3L_14813948_SNP [dm3] 3L_14820848_SNP [dm6]	G	A	7.624e^-5	0.924	INTRON CG17839
X	17487084	X_17487084_SNP [dm3] X_17593051_SNP [dm6]	A	G	7.757e^-5	0.924	INTRON CG12991
3R	11464740	3R_11464740_SNP [dm3] 3R_15639018_SNP [dm6]	T	A	7.813e^-5	0.924	DOWNSTREAM CG43336 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	11464746	3R_11464746_SNP [dm3] 3R_15639024_SNP [dm6]	T	A	7.813e^-5	0.924	DOWNSTREAM CG43336 INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	12260510	2L_12260510_SNP [dm3] 2L_12260510_SNP [dm6]	T	C	7.868e^-5	0.924	INTRON aret
3R	4854375	3R_4854375_SNP [dm3] 3R_9028653_SNP [dm6]	C	T	7.868e^-5	0.924	INTRON neur	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18478663	3R_18478663_SNP [dm3] 3R_22652941_SNP [dm6]	T	A	7.885e^-5	0.924	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9426788	2L_9426788_SNP [dm3] 2L_9426788_SNP [dm6]	C	T	7.892e^-5	0.924	UTR_5_PRIME Fbp2 UPSTREAM Fbp2 DOWNSTREAM Mco1
3R	26618148	3R_26618148_SNP [dm3] 3R_30792426_SNP [dm6]	T	G	7.953e^-5	0.924	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
2R	11575711	2R_11575711_SNP [dm3] 2R_15688206_SNP [dm6]	G	T	8.003e^-5	0.924	NON_SYNONYMOUS_CODING Cep89 SPLICE_SITE_REGION Cep89 DOWNSTREAM Ranbp11	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17262683	X_17262683_SNP [dm3] X_17368650_SNP [dm6]	G	A	8.051e^-5	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
3R	6742567	3R_6742567_SNP [dm3] 3R_10916845_SNP [dm6]	C	A	8.070e^-5	0.924	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	3792574	2R_3792574_SNP [dm3] 2R_7905069_SNP [dm6]	A	G	8.090e^-5	0.924	INTRON CG30377
3L	4152861	3L_4152861_SNP [dm3] 3L_4152861_SNP [dm6]	G	A	8.301e^-5	0.924	DOWNSTREAM CG1299 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	21076580	2R_21076580_SNP [dm3] 2R_25189057_SNP [dm6]	C	T	8.331e^-5	0.924	UPSTREAM CG9380 INTRON CG9380
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	8.357e^-5	0.924	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	7602573	2R_7602573_SNP [dm3] 2R_11715068_SNP [dm6]	G	A	8.404e^-5	0.924	INTRON pyr
2L	20860404	2L_20860404_SNP [dm3] 2L_20860404_SNP [dm6]	C	T	8.436e^-5	0.924	INTRON CG9336
3R	10122680	3R_10122680_SNP [dm3] 3R_14296958_SNP [dm6]	T	A	8.541e^-5	0.924	INTRON CG12207
2L	4364464	2L_4364464_SNP [dm3] 2L_4364464_SNP [dm6]	C	G	8.551e^-5	0.924	UPSTREAM CR45363 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25765336	3R_25765336_SNP [dm3] 3R_29939614_SNP [dm6]	T	C	8.563e^-5	0.924	SYNONYMOUS_CODING CG15523
2L	11849848	2L_11849848_SNP [dm3] 2L_11849848_SNP [dm6]	A	T	8.568e^-5	0.924	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
2R	19317545	2R_19317545_SNP [dm3] 2R_23430022_SNP [dm6]	G	T	8.634e^-5	0.924	INTRON CG9815
3R	4861376	3R_4861376_SNP [dm3] 3R_9035654_SNP [dm6]	C	T	8.659e^-5	0.924	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	11849737	2L_11849737_SNP [dm3] 2L_11849737_SNP [dm6]	G	A	8.665e^-5	0.924	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
2R	18364054	2R_18364054_SNP [dm3] 2R_22476549_SNP [dm6]	G	A	8.715e^-5	0.924	NON_SYNONYMOUS_CODING CG45063 UPSTREAM CG45062	TF binding site mE1_TFBS_cad
3R	26595100	3R_26595100_SNP [dm3] 3R_30769378_SNP [dm6]	A	G	8.750e^-5	0.924	INTRON zfh1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14154449	X_14154449_SNP [dm3] X_14260416_SNP [dm6]	G	T	8.754e^-5	0.924	UPSTREAM CG1461 INTERGENIC
2R	11521734	2R_11521734_SNP [dm3] 2R_15634229_SNP [dm6]	C	A	8.840e^-5	0.924	INTRON CG42524
3L	16331071	3L_16331071_SNP [dm3] 3L_16337971_SNP [dm6]	C	A	8.868e^-5	0.924	INTERGENIC
2R	18014339	2R_18014339_SNP [dm3] 2R_22126834_SNP [dm6]	A	G	8.993e^-5	0.924	NON_SYNONYMOUS_CODING GM130 UPSTREAM NtR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	17487089	X_17487089_SNP [dm3] X_17593056_SNP [dm6]	G	T	9.005e^-5	0.924	INTRON CG12991
2L	4512888	2L_4512888_SNP [dm3] 2L_4512888_SNP [dm6]	G	A	9.008e^-5	0.924	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12383428	3R_12383428_SNP [dm3] 3R_16557706_SNP [dm6]	G	T	9.018e^-5	0.924	INTRON CG42342
2R	15532002	2R_15532002_SNP [dm3] 2R_19644497_SNP [dm6]	C	G	9.043e^-5	0.924	DOWNSTREAM CG15124 INTERGENIC
X	19315420	X_19315420_DEL [dm3] X_19421387_DEL [dm6]	CATACATATATGTGT...	C	9.060e^-5	0.924	INTRON kek5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7480613	3L_7480613_SNP [dm3] 3L_7487513_SNP [dm6]	A	G	9.060e^-5	0.924	INTRON mthl6
2L	4147037	2L_4147037_SNP [dm3] 2L_4147037_SNP [dm6]	A	T	9.064e^-5	0.924	INTERGENIC
3R	6253185	3R_6253185_SNP [dm3] 3R_10427463_SNP [dm6]	G	C	9.067e^-5	0.924	INTERGENIC
3L	743993	3L_743993_SNP [dm3] 3L_743993_SNP [dm6]	T	C	9.186e^-5	0.924	UPSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13870686	3L_13870686_SNP [dm3] 3L_13877586_SNP [dm6]	T	G	9.220e^-5	0.924	INTRON dysc
3L	3143873	3L_3143873_SNP [dm3] 3L_3143873_SNP [dm6]	T	A	9.268e^-5	0.924	UTR_5_PRIME CG1291 UPSTREAM CG11537	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	11849725	2L_11849725_SNP [dm3] 2L_11849725_SNP [dm6]	A	G	9.270e^-5	0.924	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
X	15135578	X_15135578_SNP [dm3] X_15241545_SNP [dm6]	T	A	9.336e^-5	0.924	INTERGENIC
2R	9131300	2R_9131300_SNP [dm3] 2R_13243795_SNP [dm6]	A	T	9.445e^-5	0.924	DOWNSTREAM CR45278 INTERGENIC
2L	1677679	2L_1677679_SNP [dm3] 2L_1677679_SNP [dm6]	G	A	9.446e^-5	0.924	INTRON chinmo
3L	4534444	3L_4534444_SNP [dm3] 3L_4534444_SNP [dm6]	C	A	9.454e^-5	0.924	INTRON CG11353
3R	26486380	3R_26486380_SNP [dm3] 3R_30660658_SNP [dm6]	A	T	9.477e^-5	0.924	INTERGENIC
X	4557427	X_4557427_SNP [dm3] X_4663394_SNP [dm6]	G	A	9.496e^-5	0.924	INTRON CG3009
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	9.565e^-5	0.924	EXON CR44950
3R	22018071	3R_22018071_SNP [dm3] 3R_26192349_SNP [dm6]	A	T	9.753e^-5	0.924	INTERGENIC
2L	18871864	2L_18871864_SNP [dm3] 2L_18871864_SNP [dm6]	C	T	9.761e^-5	0.924	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14756999	X_14756999_SNP [dm3] X_14862966_SNP [dm6]	A	G	9.769e^-5	0.924	DOWNSTREAM CG9518 INTRON Flo2
2L	11419352	2L_11419352_SNP [dm3] 2L_11419352_SNP [dm6]	A	G	9.829e^-5	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17120347	X_17120347_SNP [dm3] X_17226314_SNP [dm6]	A	G	9.836e^-5	0.924	SYNONYMOUS_CODING CG10598
2R	11330698	2R_11330698_SNP [dm3] 2R_15443193_SNP [dm6]	G	T	9.837e^-5	0.924	INTRON CG43729
3R	4938018	3R_4938018_SNP [dm3] 3R_9112296_SNP [dm6]	C	A	9.901e^-5	0.924	INTRON pum
3R	6105638	3R_6105638_DEL [dm3] 3R_10279916_DEL [dm6]	ATGACTCCA	A	9.948e^-5	0.924	INTRON CG43143
3L	391184	3L_391184_SNP [dm3] 3L_391184_SNP [dm6]	C	A	9.960e^-5	0.924	DOWNSTREAM CR45378 INTRON trh
X	16800014	X_16800014_SNP [dm3] X_16905981_SNP [dm6]	C	G	1.001e^-4	0.924	EXON CR44754
2L	18376134	2L_18376134_SNP [dm3] 2L_18376134_SNP [dm6]	C	A	1.004e^-4	0.924	INTRON Fas3	TF binding site mE1_TFBS_sbb
2R	9120533	2R_9120533_SNP [dm3] 2R_13233028_SNP [dm6]	T	A	1.005e^-4	0.924	INTRON CG4670
2R	9131453	2R_9131453_SNP [dm3] 2R_13243948_SNP [dm6]	A	C	1.023e^-4	0.924	DOWNSTREAM CR45278 INTERGENIC
2L	4143125	2L_4143125_DEL [dm3] 2L_4143125_DEL [dm6]	TAGATTGAATGTGAA...	T	1.026e^-4	0.924	INTERGENIC
3R	21876370	3R_21876370_SNP [dm3] 3R_26050648_SNP [dm6]	T	G	1.026e^-4	0.924	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	4847698	3R_4847698_SNP [dm3] 3R_9021976_SNP [dm6]	G	T	1.028e^-4	0.924	NON_SYNONYMOUS_CODING neur UPSTREAM CR31429	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7988198	3R_7988198_SNP [dm3] 3R_12162476_SNP [dm6]	G	A	1.028e^-4	0.924	DOWNSTREAM Cpn INTERGENIC
3L	2646601	3L_2646601_SNP [dm3] 3L_2646601_SNP [dm6]	T	C	1.029e^-4	0.924	UTR_3_PRIME CG1143	TF binding site mE1_TFBS_cad
3R	20489370	3R_20489370_SNP [dm3] 3R_24663648_SNP [dm6]	G	T	1.036e^-4	0.924	INTRON slo	regulatory region REDfly_CRMs
3R	24672410	3R_24672410_SNP [dm3] 3R_28846688_SNP [dm6]	C	T	1.056e^-4	0.924	INTRON spg	TF binding site BDTNP1_TFBS_dl
X	14182147	X_14182147_SNP [dm3] X_14288114_SNP [dm6]	G	A	1.058e^-4	0.924	UTR_3_PRIME Muc12Ea & 1 other
2R	12116981	2R_12116981_SNP [dm3] 2R_16229476_SNP [dm6]	C	T	1.062e^-4	0.924	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16866821	2R_16866821_SNP [dm3] 2R_20979316_SNP [dm6]	G	T	1.065e^-4	0.924	UTR_5_PRIME CG9313 UPSTREAM CG9313 & 1 other
3R	6105532	3R_6105532_SNP [dm3] 3R_10279810_SNP [dm6]	C	T	1.079e^-4	0.924	INTRON CG43143
2L	9427038	2L_9427038_SNP [dm3] 2L_9427038_SNP [dm6]	G	C	1.080e^-4	0.924	NON_SYNONYMOUS_CODING Fbp2 UPSTREAM CG42847 DOWNSTREAM Mco1
2L	9427154	2L_9427154_SNP [dm3] 2L_9427154_SNP [dm6]	G	A	1.080e^-4	0.924	NON_SYNONYMOUS_CODING Fbp2 UPSTREAM CG42847 DOWNSTREAM Mco1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9427486	2L_9427486_SNP [dm3] 2L_9427486_SNP [dm6]	C	T	1.080e^-4	0.924	SYNONYMOUS_CODING Fbp2 UPSTREAM CG42847
2L	9428810	2L_9428810_SNP [dm3] 2L_9428810_SNP [dm6]	T	G	1.080e^-4	0.924	UTR_3_PRIME FucTB DOWNSTREAM Fbp2 & 1 other
2L	9430958	2L_9430958_SNP [dm3] 2L_9430958_SNP [dm6]	A	T	1.080e^-4	0.924	UTR_5_PRIME FucTB UPSTREAM FucTB & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8845512	2L_8845512_SNP [dm3] 2L_8845512_SNP [dm6]	A	G	1.080e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11327929	2R_11327929_SNP [dm3] 2R_15440424_SNP [dm6]	G	T	1.081e^-4	0.924	INTRON CG43729
3R	20489343	3R_20489343_SNP [dm3] 3R_24663621_SNP [dm6]	G	A	1.081e^-4	0.924	INTRON slo	regulatory region REDfly_CRMs
2R	11598183	2R_11598183_SNP [dm3] 2R_15710678_SNP [dm6]	A	G	1.082e^-4	0.924	DOWNSTREAM CG30083 INTERGENIC
2L	8372834	2L_8372834_SNP [dm3] 2L_8372834_SNP [dm6]	T	A	1.092e^-4	0.924	INTRON CG17292	TF binding site mE1_TFBS_HSA
2L	8372861	2L_8372861_SNP [dm3] 2L_8372861_SNP [dm6]	G	T	1.092e^-4	0.924	INTRON CG17292	TF binding site mE1_TFBS_HSA
2R	18013906	2R_18013906_SNP [dm3] 2R_22126401_SNP [dm6]	A	G	1.093e^-4	0.924	SYNONYMOUS_CODING GM130	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11168340	3L_11168340_SNP [dm3] 3L_11175240_SNP [dm6]	C	T	1.095e^-4	0.924	INTRON CG14142	TF binding site mE1_TFBS_cad
2L	9428316	2L_9428316_SNP [dm3] 2L_9428316_SNP [dm6]	A	C	1.111e^-4	0.924	SYNONYMOUS_CODING CG42847 DOWNSTREAM FucTB & 1 other
3R	23652110	3R_23652110_SNP [dm3] 3R_27826388_SNP [dm6]	A	C	1.112e^-4	0.924	INTRON CG34353	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	23652134	3R_23652134_SNP [dm3] 3R_27826412_SNP [dm6]	G	C	1.112e^-4	0.924	INTRON CG34353	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	4849030	3R_4849030_SNP [dm3] 3R_9023308_SNP [dm6]	G	A	1.121e^-4	0.924	NON_SYNONYMOUS_CODING neur EXON CR31429	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2L	14212803	2L_14212803_SNP [dm3] 2L_14212803_SNP [dm6]	A	G	1.122e^-4	0.924	INTRON Dyrk2
2L	21866518	2L_21866518_SNP [dm3] 2L_21866518_SNP [dm6]	A	G	1.123e^-4	0.924	UPSTREAM CR44917 & 1 other DOWNSTREAM CR44919 INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25779128	3R_25779128_SNP [dm3] 3R_29953406_SNP [dm6]	G	A	1.125e^-4	0.924	SYNONYMOUS_CODING TkR99D
3R	21991468	3R_21991468_SNP [dm3] 3R_26165746_SNP [dm6]	A	G	1.129e^-4	0.924	INTERGENIC
2R	9147482	2R_9147482_SNP [dm3] 2R_13259977_SNP [dm6]	A	G	1.130e^-4	0.924	UPSTREAM CG42319 INTERGENIC
3L	18850140	3L_18850140_SNP [dm3] 3L_18857040_SNP [dm6]	G	A	1.131e^-4	0.924	EXON CR45388
2R	20033431	2R_20033431_SNP [dm3] 2R_24145908_SNP [dm6]	A	G	1.136e^-4	0.924	INTRON Dat
3L	413912	3L_413912_SNP [dm3] 3L_413912_SNP [dm6]	C	T	1.139e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	2922161	2L_2922161_SNP [dm3] 2L_2922161_SNP [dm6]	T	A	1.141e^-4	0.924	INTRON lilli
2L	9430549	2L_9430549_SNP [dm3] 2L_9430549_SNP [dm6]	A	C	1.143e^-4	0.924	UPSTREAM FucTB & 1 other INTRON FucTB
3R	4877331	3R_4877331_SNP [dm3] 3R_9051609_SNP [dm6]	T	A	1.150e^-4	0.924	NON_SYNONYMOUS_CODING Mst85C UPSTREAM Kdm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	12383454	3R_12383454_SNP [dm3] 3R_16557732_SNP [dm6]	T	C	1.153e^-4	0.924	INTRON CG42342
3R	18739168	3R_18739168_SNP [dm3] 3R_22913446_SNP [dm6]	A	T	1.166e^-4	0.924	INTRON klg
3R	4877337	3R_4877337_SNP [dm3] 3R_9051615_SNP [dm6]	C	T	1.168e^-4	0.924	NON_SYNONYMOUS_CODING Mst85C UPSTREAM Kdm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	18328109	2L_18328109_SNP [dm3] 2L_18328109_SNP [dm6]	C	G	1.178e^-4	0.924	INTRON Fas3
2L	9430078	2L_9430078_SNP [dm3] 2L_9430078_SNP [dm6]	G	A	1.184e^-4	0.924	NON_SYNONYMOUS_CODING FucTB UPSTREAM FucTB	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16998506	2R_16998506_SNP [dm3] 2R_21111001_SNP [dm6]	A	G	1.184e^-4	0.924	INTRON ktub
3L	3695825	3L_3695825_SNP [dm3] 3L_3695825_SNP [dm6]	G	A	1.204e^-4	0.924	INTERGENIC
3L	14560642	3L_14560642_SNP [dm3] 3L_14567542_SNP [dm6]	C	A	1.207e^-4	0.924	INTRON CG42758
X	18464186	X_18464186_SNP [dm3] X_18570153_SNP [dm6]	C	A	1.214e^-4	0.924	INTRON Bx	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
3L	2171657	3L_2171657_INS [dm3] 3L_2171657_INS [dm6]	A	AC	1.221e^-4	0.924	UPSTREAM CG5704 EXON CR15821
3L	3090995	3L_3090995_SNP [dm3] 3L_3090995_SNP [dm6]	C	T	1.222e^-4	0.924	UTR_3_PRIME Cht7 DOWNSTREAM CG11486 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	4512885	2L_4512885_SNP [dm3] 2L_4512885_SNP [dm6]	C	T	1.222e^-4	0.924	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12134721	3L_12134721_SNP [dm3] 3L_12141621_SNP [dm6]	C	G	1.228e^-4	0.924	NON_SYNONYMOUS_CODING RhoGAP68F
3R	4872435	3R_4872435_SNP [dm3] 3R_9046713_SNP [dm6]	G	A	1.233e^-4	0.924	SYNONYMOUS_CODING Rel INTRON Nmdmc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	25759471	3R_25759471_SNP [dm3] 3R_29933749_SNP [dm6]	T	A	1.239e^-4	0.924	SYNONYMOUS_CODING CG42557 UTR_5_PRIME CG42558 UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4930963	3R_4930963_SNP [dm3] 3R_9105241_SNP [dm6]	T	C	1.240e^-4	0.924	INTRON pum
3L	1408391	3L_1408391_SNP [dm3] 3L_1408391_SNP [dm6]	T	C	1.240e^-4	0.924	INTRON Ptp61F
2R	9131294	2R_9131294_SNP [dm3] 2R_13243789_SNP [dm6]	A	C	1.245e^-4	0.924	DOWNSTREAM CR45278 INTERGENIC
2R	14210951	2R_14210951_SNP [dm3] 2R_18323446_SNP [dm6]	A	G	1.247e^-4	0.924	INTRON sbb	TF binding site BDTNP1_TFBS_twi
3R	10811112	3R_10811112_SNP [dm3] 3R_14985390_SNP [dm6]	T	C	1.250e^-4	0.924	INTERGENIC
2L	3932381	2L_3932381_SNP [dm3] 2L_3932381_SNP [dm6]	T	C	1.259e^-4	0.924	INTRON fred
3R	23480670	3R_23480670_SNP [dm3] 3R_27654948_SNP [dm6]	G	T	1.260e^-4	0.924	INTRON tau
3R	13139524	3R_13139524_SNP [dm3] 3R_17313802_SNP [dm6]	G	T	1.264e^-4	0.924	INTERGENIC
2R	11330331	2R_11330331_SNP [dm3] 2R_15442826_SNP [dm6]	A	G	1.268e^-4	0.924	INTRON CG43729
2R	21058687	2R_21058687_INS [dm3] 2R_25171164_INS [dm6]	C	CGTGCGAAAC	1.274e^-4	0.924	INTERGENIC
2R	19297196	2R_19297196_SNP [dm3] 2R_23409673_SNP [dm6]	C	G	1.274e^-4	0.924	INTERGENIC
2R	10991461	2R_10991461_SNP [dm3] 2R_15103956_SNP [dm6]	C	G	1.291e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	376777	2L_376777_SNP [dm3] 2L_376777_SNP [dm6]	G	A	1.308e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	4144530	2L_4144530_SNP [dm3] 2L_4144530_SNP [dm6]	G	A	1.310e^-4	0.924	INTERGENIC
3R	7987660	3R_7987660_SNP [dm3] 3R_12161938_SNP [dm6]	G	A	1.312e^-4	0.924	DOWNSTREAM Cpn INTERGENIC
3L	7726328	3L_7726328_SNP [dm3] 3L_7733228_SNP [dm6]	T	C	1.314e^-4	0.924	DOWNSTREAM Snmp2 INTRON CG32373
3L	16325160	3L_16325160_SNP [dm3] 3L_16332060_SNP [dm6]	G	A	1.317e^-4	0.924	NON_SYNONYMOUS_CODING retinin DOWNSTREAM CG33061 & 1 other	TF binding site mE1_TFBS_cad
2L	2593511	2L_2593511_SNP [dm3] 2L_2593511_SNP [dm6]	G	C	1.317e^-4	0.924	DOWNSTREAM CG15394 INTERGENIC
X	14622018	X_14622018_SNP [dm3] X_14727985_SNP [dm6]	C	G	1.319e^-4	0.924	INTRON NetB
2R	12456228	2R_12456228_SNP [dm3] 2R_16568723_SNP [dm6]	T	C	1.325e^-4	0.924	SYNONYMOUS_CODING CG4945	TF binding site mE1_TFBS_cad
3L	12147000	3L_12147000_SNP [dm3] 3L_12153900_SNP [dm6]	C	T	1.334e^-4	0.924	INTRON Nrx-IV
2R	17920188	2R_17920188_DEL [dm3] 2R_22032683_DEL [dm6]	GGGCTGG	G	1.337e^-4	0.924	INTRON CG34370
2R	16869835	2R_16869835_SNP [dm3] 2R_20982330_SNP [dm6]	C	T	1.338e^-4	0.924	SYNONYMOUS_CODING CG9313	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11722955	2R_11722955_SNP [dm3] 2R_15835450_SNP [dm6]	G	A	1.340e^-4	0.924	UPSTREAM Poxn INTRON tun	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
X	12795293	X_12795293_SNP [dm3] X_12901260_SNP [dm6]	C	A	1.340e^-4	0.924	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	21990600	3R_21990600_SNP [dm3] 3R_26164878_SNP [dm6]	G	T	1.346e^-4	0.924	INTERGENIC
2R	8366265	2R_8366265_SNP [dm3] 2R_12478760_SNP [dm6]	A	C	1.356e^-4	0.924	INTRON Dh44-R2
2L	1136458	2L_1136458_SNP [dm3] 2L_1136458_SNP [dm6]	T	G	1.362e^-4	0.924	INTRON CG4577
3R	20301156	3R_20301156_SNP [dm3] 3R_24475434_SNP [dm6]	A	T	1.365e^-4	0.924	INTERGENIC
3R	11464738	3R_11464738_INS [dm3] 3R_15639016_INS [dm6]	T	TTAGTTAATATTTTCAA...	1.372e^-4	0.924	DOWNSTREAM CG43336 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	11464743	3R_11464743_INS [dm3] 3R_15639021_INS [dm6]	A	AAACACAACTATAGTGAATT...	1.372e^-4	0.924	DOWNSTREAM CG43336 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	10691472	3L_10691472_SNP [dm3] 3L_10698372_SNP [dm6]	T	A	1.374e^-4	0.924	INTERGENIC
3R	13175133	3R_13175133_SNP [dm3] 3R_17349411_SNP [dm6]	A	C	1.382e^-4	0.924	INTRON beat-IIa
X	14042378	X_14042378_SNP [dm3] X_14148345_SNP [dm6]	T	G	1.393e^-4	0.924	INTERGENIC
X	16791329	X_16791329_SNP [dm3] X_16897296_SNP [dm6]	G	A	1.396e^-4	0.924	UPSTREAM CG33252 INTERGENIC
2R	9131495	2R_9131495_SNP [dm3] 2R_13243990_SNP [dm6]	G	T	1.397e^-4	0.924	DOWNSTREAM CR45278 INTERGENIC
3R	14932967	3R_14932967_SNP [dm3] 3R_19107245_SNP [dm6]	T	C	1.400e^-4	0.924	INTRON CG6040
3R	25753283	3R_25753283_SNP [dm3] 3R_29927561_SNP [dm6]	T	C	1.408e^-4	0.924	UTR_5_PRIME CG15522 INTRON CG15522
2R	9385622	2R_9385622_SNP [dm3] 2R_13498117_SNP [dm6]	T	A	1.410e^-4	0.924	INTRON drk
3L	21600167	3L_21600167_SNP [dm3] 3L_21607067_SNP [dm6]	G	A	1.410e^-4	0.924	INTRON TfAP-2
3R	11464735	3R_11464735_SNP [dm3] 3R_15639013_SNP [dm6]	T	A	1.414e^-4	0.924	DOWNSTREAM CG43336 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	3143755	3L_3143755_INS [dm3] 3L_3143755_INS [dm6]	T	TT	1.416e^-4	0.924	UPSTREAM CG1291 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	2926734	X_2926734_SNP [dm3] X_3032701_SNP [dm6]	C	A	1.431e^-4	0.924	INTRON kirre
X	14154319	X_14154319_SNP [dm3] X_14260286_SNP [dm6]	G	C	1.434e^-4	0.924	UPSTREAM CG1461 INTERGENIC
2R	11576437	2R_11576437_SNP [dm3] 2R_15688932_SNP [dm6]	T	C	1.434e^-4	0.924	NON_SYNONYMOUS_CODING Cep89 UPSTREAM CG30090	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	1.440e^-4	0.924	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14840251	2L_14840251_SNP [dm3] 2L_14840251_SNP [dm6]	T	A	1.440e^-4	0.924	DOWNSTREAM CR43805 INTERGENIC
2R	16864990	2R_16864990_SNP [dm3] 2R_20977485_SNP [dm6]	G	T	1.445e^-4	0.924	UTR_3_PRIME CG9344 DOWNSTREAM CG15650 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	7207197	2L_7207197_SNP [dm3] 2L_7207197_SNP [dm6]	A	G	1.446e^-4	0.924	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784	TF binding site mE1_TFBS_sens
3L	7583305	3L_7583305_SNP [dm3] 3L_7590205_SNP [dm6]	G	A	1.464e^-4	0.924	SYNONYMOUS_CODING CG7716
2R	3265898	2R_3265898_SNP [dm3] 2R_7378393_SNP [dm6]	C	A	1.466e^-4	0.924	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
3R	25919866	3R_25919866_SNP [dm3] 3R_30094144_SNP [dm6]	C	T	1.471e^-4	0.924	INTRON sima
3R	4932597	3R_4932597_SNP [dm3] 3R_9106875_SNP [dm6]	G	T	1.477e^-4	0.924	INTRON pum
X	16791311	X_16791311_SNP [dm3] X_16897278_SNP [dm6]	G	C	1.489e^-4	0.924	UPSTREAM CG33252 INTERGENIC
2L	14031895	2L_14031895_SNP [dm3] 2L_14031895_SNP [dm6]	T	C	1.489e^-4	0.924	UPSTREAM CG18095 DOWNSTREAM CR45284 INTERGENIC
3R	25752385	3R_25752385_SNP [dm3] 3R_29926663_SNP [dm6]	T	G	1.489e^-4	0.924	UPSTREAM Jon99Ci & 1 other INTERGENIC
X	19315413	X_19315413_SNP [dm3] X_19421380_SNP [dm6]	T	G	1.493e^-4	0.924	INTRON kek5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	22306203	2L_22306203_SNP [dm3] 2L_22306203_SNP [dm6]	T	C	1.493e^-4	0.924	INTERGENIC
2R	9131320	2R_9131320_SNP [dm3] 2R_13243815_SNP [dm6]	T	G	1.496e^-4	0.924	DOWNSTREAM CR45278 INTERGENIC
3R	15214273	3R_15214273_SNP [dm3] 3R_19388551_SNP [dm6]	T	A	1.498e^-4	0.924	SYNONYMOUS_CODING CG3734 DOWNSTREAM CR34285 INTRON Ino80	TF binding site mE1_TFBS_sens
3R	4341461	3R_4341461_SNP [dm3] 3R_8515739_SNP [dm6]	C	T	1.499e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	2389910	2L_2389910_SNP [dm3] 2L_2389910_SNP [dm6]	A	G	1.500e^-4	0.924	SYNONYMOUS_CODING CG43750
3L	9735039	3L_9735039_SNP [dm3] 3L_9741939_SNP [dm6]	A	T	1.506e^-4	0.924	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16202369	3L_16202369_SNP [dm3] 3L_16209269_SNP [dm6]	G	A	1.506e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_cad
2R	9147422	2R_9147422_SNP [dm3] 2R_13259917_SNP [dm6]	A	T	1.513e^-4	0.924	UPSTREAM CG42319 INTERGENIC
3R	16840754	3R_16840754_SNP [dm3] 3R_21015032_SNP [dm6]	C	A	1.517e^-4	0.924	UTR_3_PRIME Calx UPSTREAM CG5697 DOWNSTREAM Calx
2R	9131331	2R_9131331_SNP [dm3] 2R_13243826_SNP [dm6]	A	C	1.528e^-4	0.924	DOWNSTREAM CR45278 INTERGENIC
2L	10082295	2L_10082295_SNP [dm3] 2L_10082295_SNP [dm6]	C	T	1.533e^-4	0.924	INTRON CG44153	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6105630	3R_6105630_SNP [dm3] 3R_10279908_SNP [dm6]	T	A	1.534e^-4	0.924	INTRON CG43143
2R	8366292	2R_8366292_SNP [dm3] 2R_12478787_SNP [dm6]	C	T	1.535e^-4	0.924	INTRON Dh44-R2
2R	12282058	2R_12282058_SNP [dm3] 2R_16394553_SNP [dm6]	G	A	1.536e^-4	0.924	INTRON Sema-2b
3R	4108029	3R_4108029_SNP [dm3] 3R_8282307_SNP [dm6]	G	T	1.542e^-4	0.924	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	20033776	2L_20033776_SNP [dm3] 2L_20033776_SNP [dm6]	G	C	1.548e^-4	0.924	INTRON sNPF
3R	2868309	3R_2868309_SNP [dm3] 3R_7042587_SNP [dm6]	G	A	1.551e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	11930045	2L_11930045_SNP [dm3] 2L_11930045_SNP [dm6]	C	T	1.576e^-4	0.924	INTERGENIC
2L	6226800	2L_6226800_SNP [dm3] 2L_6226800_SNP [dm6]	T	A	1.579e^-4	0.924	UTR_3_PRIME Ugt37b1
2R	4172682	2R_4172682_SNP [dm3] 2R_8285177_SNP [dm6]	T	G	1.580e^-4	0.924	INTERGENIC
3R	4869147	3R_4869147_SNP [dm3] 3R_9043425_SNP [dm6]	C	T	1.582e^-4	0.924	NON_SYNONYMOUS_CODING Nmdmc DOWNSTREAM Rel	TF binding site mE1_TFBS_chinmo
X	12795357	X_12795357_SNP [dm3] X_12901324_SNP [dm6]	A	C	1.584e^-4	0.924	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	3692346	2R_3692346_SNP [dm3] 2R_7804841_SNP [dm6]	G	A	1.584e^-4	0.924	START_GAINED Nop17l UTR_5_PRIME Nop17l	TF binding site mE1_TFBS_cad
3L	4545922	3L_4545922_SNP [dm3] 3L_4545922_SNP [dm6]	G	A	1.599e^-4	0.924	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	21160844	X_21160844_SNP [dm3] X_21289817_SNP [dm6]	G	C	1.602e^-4	0.924	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4424389	2L_4424389_SNP [dm3] 2L_4424389_SNP [dm6]	G	A	1.604e^-4	0.924	INTRON CG15431
3L	2646310	3L_2646310_SNP [dm3] 3L_2646310_SNP [dm6]	T	C	1.608e^-4	0.924	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7479975	3L_7479975_SNP [dm3] 3L_7486875_SNP [dm6]	T	C	1.615e^-4	0.924	SYNONYMOUS_CODING mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8582894	3L_8582894_SNP [dm3] 3L_8589794_SNP [dm6]	G	C	1.616e^-4	0.924	UPSTREAM CG43078 INTRON CG43078
X	12850971	X_12850971_SNP [dm3] X_12956938_SNP [dm6]	G	T	1.616e^-4	0.924	INTRON hec
3R	15214267	3R_15214267_SNP [dm3] 3R_19388545_SNP [dm6]	A	G	1.624e^-4	0.924	SYNONYMOUS_CODING CG3734 DOWNSTREAM CR34285 INTRON Ino80	TF binding site mE1_TFBS_sens
3R	16840778	3R_16840778_SNP [dm3] 3R_21015056_SNP [dm6]	A	T	1.665e^-4	0.924	UTR_3_PRIME Calx UPSTREAM CG5697 DOWNSTREAM Calx
3R	25081773	3R_25081773_SNP [dm3] 3R_29256051_SNP [dm6]	T	C	1.666e^-4	0.924	UPSTREAM stg & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2R	11576600	2R_11576600_SNP [dm3] 2R_15689095_SNP [dm6]	G	T	1.669e^-4	0.924	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10811113	3R_10811113_SNP [dm3] 3R_14985391_SNP [dm6]	G	A	1.670e^-4	0.924	INTERGENIC
3L	7257545	3L_7257545_SNP [dm3] 3L_7264445_SNP [dm6]	T	A	1.671e^-4	0.924	UPSTREAM CG14830 INTERGENIC
3L	10691485	3L_10691485_SNP [dm3] 3L_10698385_SNP [dm6]	T	G	1.673e^-4	0.924	INTERGENIC
X	20936762	X_20936762_SNP [dm3] X_21065735_SNP [dm6]	G	A	1.694e^-4	0.924	INTRON bves & 1 other
3L	11168344	3L_11168344_SNP [dm3] 3L_11175244_SNP [dm6]	T	C	1.698e^-4	0.924	INTRON CG14142	TF binding site mE1_TFBS_cad
X	5337726	X_5337726_SNP [dm3] X_5443693_SNP [dm6]	C	G	1.701e^-4	0.924	INTERGENIC
2L	18872053	2L_18872053_SNP [dm3] 2L_18872053_SNP [dm6]	C	A	1.707e^-4	0.924	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7257568	3L_7257568_SNP [dm3] 3L_7264468_SNP [dm6]	G	A	1.708e^-4	0.924	UPSTREAM CG14830 INTERGENIC
2L	4162908	2L_4162908_DEL [dm3] 2L_4162908_DEL [dm6]	ACA	C	1.733e^-4	0.924	INTERGENIC
2L	4136103	2L_4136103_SNP [dm3] 2L_4136103_SNP [dm6]	T	G	1.747e^-4	0.924	INTERGENIC
2R	18010193	2R_18010193_SNP [dm3] 2R_22122688_SNP [dm6]	A	G	1.752e^-4	0.924	UPSTREAM mei-S332 & 1 other INTRON mei-S332	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2398653	2R_2398653_SNP [dm3] 2R_6511148_SNP [dm6]	C	T	1.752e^-4	0.924	UPSTREAM CR45127 INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2R	14341704	2R_14341704_SNP [dm3] 2R_18454199_SNP [dm6]	T	C	1.753e^-4	0.924	SYNONYMOUS_CODING CG17669	TF binding site mE1_TFBS_cad
3R	25973021	3R_25973021_SNP [dm3] 3R_30147299_SNP [dm6]	T	C	1.759e^-4	0.924	INTRON AdoR
3L	8582618	3L_8582618_SNP [dm3] 3L_8589518_SNP [dm6]	T	C	1.759e^-4	0.924	UPSTREAM CG43078 INTRON CG43078
3R	4891025	3R_4891025_SNP [dm3] 3R_9065303_SNP [dm6]	G	A	1.762e^-4	0.924	NON_SYNONYMOUS_CODING Ada UPSTREAM beag	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	13242811	2R_13242811_SNP [dm3] 2R_17355306_SNP [dm6]	T	A	1.772e^-4	0.924	INTRON mbl
2R	9147438	2R_9147438_SNP [dm3] 2R_13259933_SNP [dm6]	G	A	1.776e^-4	0.924	UPSTREAM CG42319 INTERGENIC
2L	15147427	2L_15147427_DEL [dm3] 2L_15147427_DEL [dm6]	GG	G	1.778e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	16840850	3R_16840850_SNP [dm3] 3R_21015128_SNP [dm6]	G	A	1.780e^-4	0.924	UTR_3_PRIME Calx UPSTREAM CG5697 DOWNSTREAM Calx
3R	2860427	3R_2860427_SNP [dm3] 3R_7034705_SNP [dm6]	C	T	1.782e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1675714	2L_1675714_SNP [dm3] 2L_1675714_SNP [dm6]	T	A	1.782e^-4	0.924	INTRON chinmo
2L	1675720	2L_1675720_SNP [dm3] 2L_1675720_SNP [dm6]	C	G	1.782e^-4	0.924	INTRON chinmo
3R	20509028	3R_20509028_SNP [dm3] 3R_24683306_SNP [dm6]	T	A	1.783e^-4	0.924	INTRON slo
2R	11327910	2R_11327910_SNP [dm3] 2R_15440405_SNP [dm6]	T	C	1.788e^-4	0.924	INTRON CG43729
3L	4737896	3L_4737896_SNP [dm3] 3L_4737896_SNP [dm6]	G	A	1.793e^-4	0.924	INTRON RhoGEF64C
3L	13319661	3L_13319661_SNP [dm3] 3L_13326561_SNP [dm6]	C	A	1.797e^-4	0.924	INTERGENIC
2L	14702724	2L_14702724_SNP [dm3] 2L_14702724_SNP [dm6]	C	G	1.804e^-4	0.924	INTERGENIC
3R	12383365	3R_12383365_SNP [dm3] 3R_16557643_SNP [dm6]	G	A	1.821e^-4	0.924	INTRON CG42342
2R	11671705	2R_11671705_SNP [dm3] 2R_15784200_SNP [dm6]	G	T	1.826e^-4	0.924	INTRON Zasp52	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25753642	3R_25753642_SNP [dm3] 3R_29927920_SNP [dm6]	C	T	1.829e^-4	0.924	UTR_5_PRIME CG15522 DOWNSTREAM CG31202
2L	3439022	2L_3439022_SNP [dm3] 2L_3439022_SNP [dm6]	A	G	1.838e^-4	0.924	INTERGENIC
2L	4143122	2L_4143122_SNP [dm3] 2L_4143122_SNP [dm6]	A	G	1.845e^-4	0.924	INTERGENIC
3L	15213586	3L_15213586_SNP [dm3] 3L_15220486_SNP [dm6]	T	G	1.846e^-4	0.924	INTERGENIC
2R	8372590	2R_8372590_SNP [dm3] 2R_12485085_SNP [dm6]	T	C	1.850e^-4	0.924	INTRON Dh44-R2
3R	21876295	3R_21876295_SNP [dm3] 3R_26050573_SNP [dm6]	T	C	1.851e^-4	0.924	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10264877	3L_10264877_SNP [dm3] 3L_10271777_SNP [dm6]	G	A	1.853e^-4	0.924	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	17920187	2R_17920187_SNP [dm3] 2R_22032682_SNP [dm6]	G	T	1.867e^-4	0.924	INTRON CG34370
3L	16202334	3L_16202334_SNP [dm3] 3L_16209234_SNP [dm6]	A	T	1.874e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_cad
3R	4606495	3R_4606495_SNP [dm3] 3R_8780773_SNP [dm6]	T	C	1.876e^-4	0.924	UTR_5_PRIME CG33189 UPSTREAM CG33191 & 1 other DOWNSTREAM Pif1A INTRON Pif1B & 1 other	TF binding site mE1_TFBS_cad
X	12795289	X_12795289_SNP [dm3] X_12901256_SNP [dm6]	G	A	1.876e^-4	0.924	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	7148303	2R_7148303_SNP [dm3] 2R_11260798_SNP [dm6]	C	G	1.889e^-4	0.924	UPSTREAM Cpr47Ec DOWNSTREAM Cpr47Ed INTERGENIC
3R	26618196	3R_26618196_SNP [dm3] 3R_30792474_SNP [dm6]	C	T	1.900e^-4	0.924	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
X	17440893	X_17440893_SNP [dm3] X_17546860_SNP [dm6]	A	C	1.910e^-4	0.924	INTRON CG43658
3L	3547796	3L_3547796_SNP [dm3] 3L_3547796_SNP [dm6]	T	A	1.910e^-4	0.924	INTRON Eip63E
3R	4859535	3R_4859535_SNP [dm3] 3R_9033813_SNP [dm6]	A	G	1.927e^-4	0.924	UPSTREAM neur INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	17487092	X_17487092_SNP [dm3] X_17593059_SNP [dm6]	A	G	1.928e^-4	0.924	INTRON CG12991
3R	4839387	3R_4839387_SNP [dm3] 3R_9013665_SNP [dm6]	G	A	1.933e^-4	0.924	UPSTREAM CG11984 INTRON CG11984	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	5492940	3L_5492940_SNP [dm3] 3L_5499840_SNP [dm6]	G	T	1.936e^-4	0.924	UPSTREAM blanks EXON CR44518	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	17259658	X_17259658_SNP [dm3] X_17365625_SNP [dm6]	T	C	1.944e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
X	12795292	X_12795292_SNP [dm3] X_12901259_SNP [dm6]	T	C	1.944e^-4	0.924	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	16864986	2R_16864986_SNP [dm3] 2R_20977481_SNP [dm6]	A	G	1.950e^-4	0.924	UTR_3_PRIME CG9344 DOWNSTREAM CG15650 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	8481724	3R_8481724_SNP [dm3] 3R_12656002_SNP [dm6]	G	A	1.963e^-4	0.924	INTRON CG6225
3R	8481733	3R_8481733_SNP [dm3] 3R_12656011_SNP [dm6]	C	T	1.963e^-4	0.924	INTRON CG6225
2R	19533244	2R_19533244_SNP [dm3] 2R_23645721_SNP [dm6]	G	A	1.971e^-4	0.924	UPSTREAM retn INTRON retn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	3764662	2L_3764662_SNP [dm3] 2L_3764662_SNP [dm6]	T	A	1.975e^-4	0.924	NON_SYNONYMOUS_CODING CG43707 UPSTREAM CG43703	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21990412	3R_21990412_SNP [dm3] 3R_26164690_SNP [dm6]	G	C	1.977e^-4	0.924	INTERGENIC
3R	16840849	3R_16840849_SNP [dm3] 3R_21015127_SNP [dm6]	G	A	1.987e^-4	0.924	UTR_3_PRIME Calx UPSTREAM CG5697 DOWNSTREAM Calx
2L	4143121	2L_4143121_SNP [dm3] 2L_4143121_SNP [dm6]	G	T	1.989e^-4	0.924	INTERGENIC
3L	7257559	3L_7257559_SNP [dm3] 3L_7264459_SNP [dm6]	G	A	1.991e^-4	0.924	UPSTREAM CG14830 INTERGENIC
3R	25758849	3R_25758849_SNP [dm3] 3R_29933127_SNP [dm6]	T	A	1.994e^-4	0.924	UPSTREAM CG42557 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	3254555	2R_3254555_SNP [dm3] 2R_7367050_SNP [dm6]	T	A	2.002e^-4	0.924	INTRON Dscam1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16202321	3L_16202321_SNP [dm3] 3L_16209221_SNP [dm6]	G	T	2.006e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_cad
3R	4928188	3R_4928188_SNP [dm3] 3R_9102466_SNP [dm6]	C	G	2.012e^-4	0.924	INTRON pum
2L	3439090	2L_3439090_DEL [dm3] 2L_3439090_DEL [dm6]	GTTATTC	G	2.017e^-4	0.924	INTERGENIC
3L	7480629	3L_7480629_SNP [dm3] 3L_7487529_SNP [dm6]	C	T	2.017e^-4	0.924	INTRON mthl6
3L	2643105	3L_2643105_DEL [dm3] 3L_2643105_DEL [dm6]	TAATAT	T	2.018e^-4	0.924	INTRON CG14949
2R	18010165	2R_18010165_SNP [dm3] 2R_22122660_SNP [dm6]	A	T	2.020e^-4	0.924	UPSTREAM mei-S332 & 1 other INTRON mei-S332	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19598306	2L_19598306_SNP [dm3] 2L_19598306_SNP [dm6]	A	T	2.029e^-4	0.924	INTRON Lar	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	17440926	X_17440926_DEL [dm3] X_17546893_DEL [dm6]	GTCT	A	2.029e^-4	0.924	INTRON CG43658
2L	510296	2L_510296_SNP [dm3] 2L_510296_SNP [dm6]	C	G	2.036e^-4	0.924	INTRON ush	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Trl
X	20218360	X_20218360_SNP [dm3] X_20347333_SNP [dm6]	C	A	2.043e^-4	0.924	INTERGENIC
3L	16336502	3L_16336502_SNP [dm3] 3L_16343402_SNP [dm6]	C	A	2.046e^-4	0.924	SYNONYMOUS_CODING CG4998 INTRON CG4998	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18013873	2R_18013873_SNP [dm3] 2R_22126368_SNP [dm6]	T	C	2.055e^-4	0.924	SYNONYMOUS_CODING GM130	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1982130	3L_1982130_INS [dm3] 3L_1982130_INS [dm6]	G	GTGGGGGGG	2.059e^-4	0.924	INTERGENIC
3L	2894083	3L_2894083_DEL [dm3] 3L_2894083_DEL [dm6]	TT	G	2.065e^-4	0.924	UPSTREAM Shab INTERGENIC
3R	12744478	3R_12744478_SNP [dm3] 3R_16918756_SNP [dm6]	C	T	2.066e^-4	0.924	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	25759468	3R_25759468_SNP [dm3] 3R_29933746_SNP [dm6]	C	T	2.075e^-4	0.924	SYNONYMOUS_CODING CG42557 UTR_5_PRIME CG42558 UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19374824	2L_19374824_SNP [dm3] 2L_19374824_SNP [dm6]	G	C	2.082e^-4	0.924	INTERGENIC
2R	17846134	2R_17846134_SNP [dm3] 2R_21958629_SNP [dm6]	C	G	2.090e^-4	0.924	INTERGENIC
3L	12146498	3L_12146498_SNP [dm3] 3L_12153398_SNP [dm6]	G	A	2.098e^-4	0.924	SYNONYMOUS_CODING Nrx-IV
3R	6105689	3R_6105689_SNP [dm3] 3R_10279967_SNP [dm6]	G	A	2.100e^-4	0.924	INTRON CG43143
3R	12743342	3R_12743342_SNP [dm3] 3R_16917620_SNP [dm6]	G	C	2.102e^-4	0.924	INTRON iab-8	TF binding site mE1_TFBS_cad
3L	23838988	3L_23838988_SNP [dm3] 3L_23845888_SNP [dm6]	T	A	2.104e^-4	0.924	INTRON CG40470
2R	12696827	2R_12696827_SNP [dm3] 2R_16809322_SNP [dm6]	C	A	2.112e^-4	0.924	INTERGENIC
3L	2646631	3L_2646631_SNP [dm3] 3L_2646631_SNP [dm6]	T	A	2.117e^-4	0.924	UTR_3_PRIME CG1143 DOWNSTREAM CG1143	TF binding site mE1_TFBS_cad
3L	4821645	3L_4821645_SNP [dm3] 3L_4821645_SNP [dm6]	C	G	2.127e^-4	0.924	INTRON Dhc64C
3L	4821647	3L_4821647_SNP [dm3] 3L_4821647_SNP [dm6]	A	G	2.127e^-4	0.924	INTRON Dhc64C
2L	18858626	2L_18858626_SNP [dm3] 2L_18858626_SNP [dm6]	A	G	2.127e^-4	0.924	UPSTREAM CG10602 DOWNSTREAM tup INTRON CG10602 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
3L	14388889	3L_14388889_SNP [dm3] 3L_14395789_SNP [dm6]	G	A	2.136e^-4	0.924	INTERGENIC
3R	25752413	3R_25752413_SNP [dm3] 3R_29926691_SNP [dm6]	G	A	2.138e^-4	0.924	UPSTREAM Jon99Ci & 1 other INTERGENIC
2L	11690194	2L_11690194_SNP [dm3] 2L_11690194_SNP [dm6]	A	G	2.141e^-4	0.924	INTERGENIC
X	9814806	X_9814806_DEL [dm3] X_9920773_DEL [dm6]	TT	T	2.145e^-4	0.924	INTERGENIC
3L	12134701	3L_12134701_SNP [dm3] 3L_12141601_SNP [dm6]	G	A	2.147e^-4	0.924	SYNONYMOUS_CODING RhoGAP68F
3R	7331866	3R_7331866_SNP [dm3] 3R_11506144_SNP [dm6]	C	T	2.148e^-4	0.924	DOWNSTREAM dpr5 INTERGENIC
X	19400503	X_19400503_SNP [dm3] X_19506470_SNP [dm6]	A	T	2.150e^-4	0.924	UTR_5_PRIME Pfrx INTRON Pfrx & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	12960117	X_12960117_SNP [dm3] X_13066084_SNP [dm6]	A	G	2.162e^-4	0.924	INTRON rad
2R	19317553	2R_19317553_SNP [dm3] 2R_23430030_SNP [dm6]	C	T	2.169e^-4	0.924	INTRON CG9815
X	14769207	X_14769207_SNP [dm3] X_14875174_SNP [dm6]	A	C	2.172e^-4	0.924	DOWNSTREAM CG45065 & 1 other INTRON Flo2
3R	22017963	3R_22017963_SNP [dm3] 3R_26192241_SNP [dm6]	T	G	2.174e^-4	0.924	INTERGENIC
3R	12744630	3R_12744630_SNP [dm3] 3R_16918908_SNP [dm6]	G	A	2.175e^-4	0.924	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	18248575	3L_18248575_SNP [dm3] 3L_18255475_SNP [dm6]	A	T	2.182e^-4	0.924	INTERGENIC
2R	21076783	2R_21076783_SNP [dm3] 2R_25189260_SNP [dm6]	G	A	2.183e^-4	0.924	UPSTREAM CG9380 INTRON CG9380	transposable element FlyBase
2R	10654646	2R_10654646_SNP [dm3] 2R_14767141_SNP [dm6]	G	C	2.187e^-4	0.924	INTRON Spred
3L	12146627	3L_12146627_SNP [dm3] 3L_12153527_SNP [dm6]	T	C	2.189e^-4	0.924	SYNONYMOUS_CODING Nrx-IV
3L	1629802	3L_1629802_SNP [dm3] 3L_1629802_SNP [dm6]	C	T	2.205e^-4	0.924	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
X	14154432	X_14154432_SNP [dm3] X_14260399_SNP [dm6]	A	T	2.206e^-4	0.924	UPSTREAM CG1461 INTERGENIC
X	19487674	X_19487674_SNP [dm3] X_19593641_SNP [dm6]	G	T	2.208e^-4	0.924	NON_SYNONYMOUS_CODING CG14205	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3R	26618205	3R_26618205_SNP [dm3] 3R_30792483_SNP [dm6]	C	T	2.217e^-4	0.924	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
3L	412023	3L_412023_SNP [dm3] 3L_412023_SNP [dm6]	G	T	2.219e^-4	0.924	INTERGENIC
2R	14978893	2R_14978893_SNP [dm3] 2R_19091388_SNP [dm6]	C	T	2.227e^-4	0.924	SYNONYMOUS_CODING 5-HT1A
2R	9139352	2R_9139352_SNP [dm3] 2R_13251847_SNP [dm6]	A	T	2.229e^-4	0.924	UPSTREAM CG4712 DOWNSTREAM CG4714 INTERGENIC	TF binding site mE1_TFBS_cad
3L	8908321	3L_8908321_SNP [dm3] 3L_8915221_SNP [dm6]	C	T	2.235e^-4	0.924	UPSTREAM CR43970 INTRON Tsp66E
3L	7257565	3L_7257565_SNP [dm3] 3L_7264465_SNP [dm6]	C	T	2.239e^-4	0.924	UPSTREAM CG14830 INTERGENIC
3R	10410917	3R_10410917_SNP [dm3] 3R_14585195_SNP [dm6]	A	T	2.248e^-4	0.924	INTRON stumps	TF binding site BDTNP1_TFBS_prd
3L	1347788	3L_1347788_SNP [dm3] 3L_1347788_SNP [dm6]	C	T	2.251e^-4	0.924	INTRON Ptp61F	TF binding site BDTNP1_TFBS_prd
3R	13570329	3R_13570329_SNP [dm3] 3R_17744607_SNP [dm6]	A	C	2.252e^-4	0.924	INTRON TyrRII	TF binding site mE1_TFBS_cad
2L	11849735	2L_11849735_SNP [dm3] 2L_11849735_SNP [dm6]	A	G	2.260e^-4	0.924	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
3R	25765280	3R_25765280_SNP [dm3] 3R_29939558_SNP [dm6]	T	A	2.264e^-4	0.924	NON_SYNONYMOUS_CODING CG15523
3L	14392067	3L_14392067_SNP [dm3] 3L_14398967_SNP [dm6]	T	A	2.270e^-4	0.924	INTERGENIC
2R	11724086	2R_11724086_SNP [dm3] 2R_15836581_SNP [dm6]	A	G	2.308e^-4	0.924	INTRON tun	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens mE1_TFBS_Trl
3L	7257534	3L_7257534_SNP [dm3] 3L_7264434_SNP [dm6]	T	A	2.309e^-4	0.924	UPSTREAM CG14830 INTERGENIC
2R	11726154	2R_11726154_SNP [dm3] 2R_15838649_SNP [dm6]	G	A	2.313e^-4	0.924	INTRON tun	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Trl
3L	9873427	3L_9873427_SNP [dm3] 3L_9880327_SNP [dm6]	A	G	2.318e^-4	0.924	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
3L	2644981	3L_2644981_SNP [dm3] 3L_2644981_SNP [dm6]	A	T	2.326e^-4	0.924	UPSTREAM CG1143 INTERGENIC
3L	7257549	3L_7257549_SNP [dm3] 3L_7264449_SNP [dm6]	T	A	2.328e^-4	0.924	UPSTREAM CG14830 INTERGENIC
3L	14062611	3L_14062611_SNP [dm3] 3L_14069511_SNP [dm6]	T	A	2.328e^-4	0.924	INTRON CG32138
3R	13570318	3R_13570318_SNP [dm3] 3R_17744596_SNP [dm6]	C	A	2.336e^-4	0.924	INTRON TyrRII	TF binding site mE1_TFBS_cad
2L	22020494	2L_22020494_SNP [dm3] 2L_22020494_SNP [dm6]	A	G	2.359e^-4	0.924	DOWNSTREAM CR33987 INTRON tio	TF binding site mE1_TFBS_Trl
2R	11567861	2R_11567861_SNP [dm3] 2R_15680356_SNP [dm6]	C	A	2.365e^-4	0.924	UPSTREAM CG30091 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	14815465	3L_14815465_SNP [dm3] 3L_14822365_SNP [dm6]	G	A	2.365e^-4	0.924	INTRON CG17839
X	20218600	X_20218600_SNP [dm3] X_20347573_SNP [dm6]	T	A	2.379e^-4	0.924	INTERGENIC
X	13955475	X_13955475_SNP [dm3] X_14061442_SNP [dm6]	G	A	2.380e^-4	0.924	UTR_5_PRIME Ste:CG33236
3R	4045004	3R_4045004_SNP [dm3] 3R_8219282_SNP [dm6]	A	G	2.394e^-4	0.924	NON_SYNONYMOUS_CODING CG7800 UPSTREAM CG18249
2R	6606946	2R_6606946_INS [dm3] 2R_10719441_INS [dm6]	CCC	ATTTAA	2.405e^-4	0.924	INTRON stan
2L	6013813	2L_6013813_SNP [dm3] 2L_6013813_SNP [dm6]	G	C	2.408e^-4	0.924	SYNONYMOUS_CODING H2.0	TF binding site mE1_TFBS_chinmo
X	6439088	X_6439088_SNP [dm3] X_6545055_SNP [dm6]	G	A	2.410e^-4	0.924	INTRON CG34417
3L	1347398	3L_1347398_SNP [dm3] 3L_1347398_SNP [dm6]	T	C	2.411e^-4	0.924	INTRON Ptp61F	TF binding site BDTNP1_TFBS_prd
2L	7001031	2L_7001031_SNP [dm3] 2L_7001031_SNP [dm6]	A	T	2.411e^-4	0.924	INTRON uif
2R	12633060	2R_12633060_SNP [dm3] 2R_16745555_SNP [dm6]	C	T	2.414e^-4	0.924	UTR_3_PRIME CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad
X	19401744	X_19401744_SNP [dm3] X_19507711_SNP [dm6]	T	C	2.432e^-4	0.924	SYNONYMOUS_CODING Pfrx INTRON CG14200	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10984469	X_10984469_SNP [dm3] X_11090436_SNP [dm6]	C	G	2.432e^-4	0.924	UTR_5_PRIME CG2076 DOWNSTREAM Vago EXON CR45604	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	26935103	3R_26935103_SNP [dm3] 3R_31109381_SNP [dm6]	C	T	2.434e^-4	0.924	UPSTREAM CG11318 INTERGENIC
X	6643040	X_6643040_SNP [dm3] X_6749007_SNP [dm6]	A	T	2.457e^-4	0.924	UPSTREAM CR44964 INTRON CG14439
2R	16864005	2R_16864005_SNP [dm3] 2R_20976500_SNP [dm6]	A	T	2.466e^-4	0.924	UPSTREAM CG9344 INTRON CG34115	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	4400908	3R_4400908_SNP [dm3] 3R_8575186_SNP [dm6]	G	C	2.476e^-4	0.924	INTERGENIC
3R	6253298	3R_6253298_SNP [dm3] 3R_10427576_SNP [dm6]	A	G	2.484e^-4	0.924	INTERGENIC
2L	9101968	2L_9101968_SNP [dm3] 2L_9101968_SNP [dm6]	T	A	2.487e^-4	0.924	INTERGENIC
3R	13024944	3R_13024944_SNP [dm3] 3R_17199222_SNP [dm6]	T	C	2.497e^-4	0.924	INTRON Mur89F
3R	11455540	3R_11455540_DEL [dm3] 3R_15629818_DEL [dm6]	TCAGCTTGTCT...	T	2.515e^-4	0.924	INTERGENIC
2R	16425872	2R_16425872_SNP [dm3] 2R_20538367_SNP [dm6]	T	C	2.518e^-4	0.924	DOWNSTREAM CG13427 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
2R	16868926	2R_16868926_SNP [dm3] 2R_20981421_SNP [dm6]	T	C	2.520e^-4	0.924	SYNONYMOUS_CODING CG9313	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15131423	3R_15131423_SNP [dm3] 3R_19305701_SNP [dm6]	G	A	2.529e^-4	0.924	SYNONYMOUS_CODING Dl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	15214249	3R_15214249_SNP [dm3] 3R_19388527_SNP [dm6]	C	T	2.531e^-4	0.924	SYNONYMOUS_CODING CG3734 DOWNSTREAM CR34285 INTRON Ino80	TF binding site mE1_TFBS_sens
X	21081580	X_21081580_SNP [dm3] X_21210553_SNP [dm6]	A	G	2.532e^-4	0.924	INTRON CG32521
3R	25395459	3R_25395459_INS [dm3] 3R_29569737_INS [dm6]	T	TT	2.536e^-4	0.924	INTERGENIC
3R	20489476	3R_20489476_SNP [dm3] 3R_24663754_SNP [dm6]	G	T	2.537e^-4	0.924	INTRON slo	regulatory region REDfly_CRMs
2R	9385610	2R_9385610_SNP [dm3] 2R_13498105_SNP [dm6]	T	A	2.537e^-4	0.924	INTRON drk
2L	10229378	2L_10229378_SNP [dm3] 2L_10229378_SNP [dm6]	T	C	2.537e^-4	0.924	INTRON CG5694
2R	12821148	2R_12821148_SNP [dm3] 2R_16933643_SNP [dm6]	C	T	2.546e^-4	0.924	INTRON Pkc53E	TF binding site BDTNP1_TFBS_twi
3L	2202310	3L_2202310_SNP [dm3] 3L_2202310_SNP [dm6]	A	G	2.552e^-4	0.924	INTERGENIC
3L	22794970	3L_22794970_SNP [dm3] 3L_22801870_SNP [dm6]	A	G	2.555e^-4	0.924	UPSTREAM jim INTRON jim
3L	16983298	3L_16983298_INS [dm3] 3L_16990198_INS [dm6]	A	AG	2.563e^-4	0.924	INTRON Exn
3R	13360239	3R_13360239_INS [dm3] 3R_17534517_INS [dm6]	T	AA	2.564e^-4	0.924	UTR_5_PRIME CG5823 UPSTREAM P5cr-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	4081939	2R_4081939_SNP [dm3] 2R_8194434_SNP [dm6]	A	G	2.565e^-4	0.924	INTRON LRP1
2L	21879086	2L_21879086_SNP [dm3] 2L_21879086_SNP [dm6]	C	G	2.585e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4512900	2L_4512900_SNP [dm3] 2L_4512900_SNP [dm6]	C	T	2.592e^-4	0.924	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14541196	2R_14541196_SNP [dm3] 2R_18653691_SNP [dm6]	T	C	2.597e^-4	0.924	UPSTREAM SP2637 INTRON SP2637	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	16983394	3L_16983394_SNP [dm3] 3L_16990294_SNP [dm6]	C	A	2.603e^-4	0.924	INTRON Exn
X	13955479	X_13955479_SNP [dm3] X_14061446_SNP [dm6]	T	G	2.606e^-4	0.924	START_GAINED Ste:CG33236 UTR_5_PRIME Ste:CG33236
3L	2460264	3L_2460264_SNP [dm3] 3L_2460264_SNP [dm6]	C	T	2.616e^-4	0.924	UPSTREAM CG45186 INTRON CG45186
3R	21454048	3R_21454048_SNP [dm3] 3R_25628326_SNP [dm6]	C	T	2.624e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3779143	X_3779143_INS [dm3] X_3885110_INS [dm6]	T	TCATT	2.627e^-4	0.924	INTRON CG15239
3R	4929031	3R_4929031_SNP [dm3] 3R_9103309_SNP [dm6]	G	A	2.630e^-4	0.924	INTRON pum
3L	3680402	3L_3680402_SNP [dm3] 3L_3680402_SNP [dm6]	T	C	2.631e^-4	0.924	INTERGENIC
3R	16745731	3R_16745731_SNP [dm3] 3R_20920009_SNP [dm6]	T	C	2.633e^-4	0.924	INTRON CG31191 & 1 other
2R	3256787	2R_3256787_SNP [dm3] 2R_7369282_SNP [dm6]	C	T	2.642e^-4	0.924	INTRON Dscam1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4144996	2L_4144996_SNP [dm3] 2L_4144996_SNP [dm6]	T	C	2.651e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5557581	2L_5557581_SNP [dm3] 2L_5557581_SNP [dm6]	A	G	2.652e^-4	0.924	SPLICE_SITE_REGION GluRIIA SYNONYMOUS_CODING GluRIIA
3R	23480694	3R_23480694_SNP [dm3] 3R_27654972_SNP [dm6]	A	G	2.666e^-4	0.924	INTRON tau
2L	4147795	2L_4147795_SNP [dm3] 2L_4147795_SNP [dm6]	G	C	2.666e^-4	0.924	INTERGENIC
3L	11855674	3L_11855674_SNP [dm3] 3L_11862574_SNP [dm6]	C	T	2.680e^-4	0.924	NON_SYNONYMOUS_CODING CG44837 INTRON CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17440905	X_17440905_SNP [dm3] X_17546872_SNP [dm6]	A	C	2.682e^-4	0.924	INTRON CG43658
X	17440908	X_17440908_SNP [dm3] X_17546875_SNP [dm6]	T	C	2.682e^-4	0.924	INTRON CG43658
3R	25400454	3R_25400454_SNP [dm3] 3R_29574732_SNP [dm6]	G	C	2.692e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	26671686	3R_26671686_SNP [dm3] 3R_30845964_SNP [dm6]	T	A	2.693e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	2172627	3L_2172627_SNP [dm3] 3L_2172627_SNP [dm6]	T	C	2.711e^-4	0.924	DOWNSTREAM CG15820 EXON CR15821
X	7897466	X_7897466_SNP [dm3] X_8003433_SNP [dm6]	T	C	2.719e^-4	0.924	INTRON Tbh
3L	7257564	3L_7257564_SNP [dm3] 3L_7264464_SNP [dm6]	C	T	2.723e^-4	0.924	UPSTREAM CG14830 INTERGENIC
2R	9131372	2R_9131372_SNP [dm3] 2R_13243867_SNP [dm6]	T	C	2.728e^-4	0.924	DOWNSTREAM CR45278 INTERGENIC
3R	24427748	3R_24427748_SNP [dm3] 3R_28602026_SNP [dm6]	A	T	2.734e^-4	0.924	UPSTREAM snoRNA:Psi28S-3405c & 2 others DOWNSTREAM snoRNA:Psi28S-3405a & 2 others INTRON Hrb98DE
3R	13099374	3R_13099374_SNP [dm3] 3R_17273652_SNP [dm6]	G	C	2.736e^-4	0.924	INTERGENIC
X	13137037	X_13137037_SNP [dm3] X_13243004_SNP [dm6]	C	T	2.739e^-4	0.924	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	12146645	3L_12146645_SNP [dm3] 3L_12153545_SNP [dm6]	T	C	2.742e^-4	0.924	SYNONYMOUS_CODING Nrx-IV
2L	13610291	2L_13610291_SNP [dm3] 2L_13610291_SNP [dm6]	C	T	2.742e^-4	0.924	NON_SYNONYMOUS_CODING kuz DOWNSTREAM mir-2489
2L	1205672	2L_1205672_INS [dm3] 2L_1205672_INS [dm6]	A	AAGCCA	2.744e^-4	0.924	DOWNSTREAM CG14342 INTERGENIC
X	21160839	X_21160839_SNP [dm3] X_21289812_SNP [dm6]	T	C	2.746e^-4	0.924	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13200879	2R_13200879_SNP [dm3] 2R_17313374_SNP [dm6]	T	G	2.748e^-4	0.924	INTRON mbl
2R	9147435	2R_9147435_SNP [dm3] 2R_13259930_SNP [dm6]	T	A	2.751e^-4	0.924	UPSTREAM CG42319 INTERGENIC
3R	6050546	3R_6050546_SNP [dm3] 3R_10224824_SNP [dm6]	A	G	2.753e^-4	0.924	UPSTREAM CG34107 & 2 others INTERGENIC
3R	10923105	3R_10923105_SNP [dm3] 3R_15097383_SNP [dm6]	G	T	2.753e^-4	0.924	UTR_3_PRIME CG42788
2R	15531961	2R_15531961_SNP [dm3] 2R_19644456_SNP [dm6]	A	G	2.758e^-4	0.924	DOWNSTREAM CG15124 INTERGENIC
3L	12446726	3L_12446726_SNP [dm3] 3L_12453626_SNP [dm6]	A	C	2.761e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_Kr
X	3779203	X_3779203_SNP [dm3] X_3885170_SNP [dm6]	G	A	2.763e^-4	0.924	INTRON CG15239
2R	10991562	2R_10991562_SNP [dm3] 2R_15104057_SNP [dm6]	T	A	2.770e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	9457526	2R_9457526_SNP [dm3] 2R_13570021_SNP [dm6]	C	G	2.770e^-4	0.924	DOWNSTREAM CG42807 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
3R	26687787	3R_26687787_SNP [dm3] 3R_30862065_SNP [dm6]	C	T	2.773e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	9823760	3R_9823760_SNP [dm3] 3R_13998038_SNP [dm6]	T	C	2.776e^-4	0.924	INTRON rdx	TF binding site mE1_TFBS_HSA
3R	8481700	3R_8481700_SNP [dm3] 3R_12655978_SNP [dm6]	C	G	2.781e^-4	0.924	INTRON CG6225
3R	13937545	3R_13937545_SNP [dm3] 3R_18111823_SNP [dm6]	T	A	2.781e^-4	0.924	INTRON sr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1103753	2L_1103753_SNP [dm3] 2L_1103753_SNP [dm6]	T	G	2.810e^-4	0.924	NON_SYNONYMOUS_CODING mtRNApol	TF binding site mE1_TFBS_cad
3R	25767711	3R_25767711_SNP [dm3] 3R_29941989_SNP [dm6]	T	C	2.813e^-4	0.924	SYNONYMOUS_CODING CG15523
3L	10694245	3L_10694245_SNP [dm3] 3L_10701145_SNP [dm6]	G	A	2.813e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7594976	3L_7594976_SNP [dm3] 3L_7601876_SNP [dm6]	A	C	2.814e^-4	0.924	INTRON CG33275
3R	21990546	3R_21990546_SNP [dm3] 3R_26164824_SNP [dm6]	A	G	2.836e^-4	0.924	INTERGENIC
2L	2669602	2L_2669602_SNP [dm3] 2L_2669602_SNP [dm6]	G	T	2.839e^-4	0.924	UPSTREAM Gr23a INTERGENIC
3L	12097021	3L_12097021_SNP [dm3] 3L_12103921_SNP [dm6]	C	T	2.844e^-4	0.924	INTERGENIC
2R	11648030	2R_11648030_SNP [dm3] 2R_15760525_SNP [dm6]	A	T	2.855e^-4	0.924	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	21458725	X_21458725_SNP [dm3] X_21587698_SNP [dm6]	T	C	2.861e^-4	0.924	INTERGENIC
3L	10694223	3L_10694223_SNP [dm3] 3L_10701123_SNP [dm6]	C	A	2.871e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15836747	2R_15836747_SNP [dm3] 2R_19949242_SNP [dm6]	G	T	2.872e^-4	0.924	INTERGENIC
3L	17596807	3L_17596807_SNP [dm3] 3L_17603707_SNP [dm6]	T	A	2.877e^-4	0.924	INTRON Eip74EF
2L	11849866	2L_11849866_SNP [dm3] 2L_11849866_SNP [dm6]	G	A	2.882e^-4	0.924	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
2R	6559077	2R_6559077_SNP [dm3] 2R_10671572_SNP [dm6]	C	T	2.885e^-4	0.924	INTERGENIC
2R	8371767	2R_8371767_SNP [dm3] 2R_12484262_SNP [dm6]	T	A	2.892e^-4	0.924	INTRON Dh44-R2
2L	15090507	2L_15090507_SNP [dm3] 2L_15090507_SNP [dm6]	T	C	2.898e^-4	0.924	INTRON CG15270
2R	7567930	2R_7567930_SNP [dm3] 2R_11680425_SNP [dm6]	G	T	2.905e^-4	0.924	INTRON Buffy	TF binding site mE1_TFBS_inv
X	13137038	X_13137038_SNP [dm3] X_13243005_SNP [dm6]	A	G	2.906e^-4	0.924	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	20945993	2R_20945993_SNP [dm3] 2R_25058470_SNP [dm6]	A	G	2.920e^-4	0.924	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_prd
3L	4785472	3L_4785472_SNP [dm3] 3L_4785472_SNP [dm6]	T	A	2.922e^-4	0.924	INTRON RhoGEF64C
2L	21805871	2L_21805871_SNP [dm3] 2L_21805871_SNP [dm6]	G	C	2.923e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	7987958	3R_7987958_INS [dm3] 3R_12162236_INS [dm6]	G	GGCCAACGAACCAGTCAG...	2.928e^-4	0.924	DOWNSTREAM Cpn INTERGENIC
2R	7410264	2R_7410264_SNP [dm3] 2R_11522759_SNP [dm6]	C	G	2.929e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2R	18010243	2R_18010243_SNP [dm3] 2R_22122738_SNP [dm6]	G	A	2.931e^-4	0.924	UPSTREAM mei-S332 & 1 other INTRON mei-S332	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14678570	2R_14678570_SNP [dm3] 2R_18791065_SNP [dm6]	C	T	2.931e^-4	0.924	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12097022	3L_12097022_DEL [dm3] 3L_12103922_DEL [dm6]	AACTAAAAATTGA...	A	2.934e^-4	0.924	INTERGENIC
2R	19127148	2R_19127148_SNP [dm3] 2R_23239625_SNP [dm6]	T	G	2.937e^-4	0.924	INTERGENIC
2L	6464065	2L_6464065_SNP [dm3] 2L_6464065_SNP [dm6]	A	C	2.940e^-4	0.924	UTR_5_PRIME CG16947	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	14726419	2R_14726419_SNP [dm3] 2R_18838914_SNP [dm6]	A	G	2.941e^-4	0.924	SYNONYMOUS_CODING CG15099	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2202386	3L_2202386_SNP [dm3] 3L_2202386_SNP [dm6]	T	C	2.949e^-4	0.924	INTERGENIC
3R	14178742	3R_14178742_SNP [dm3] 3R_18353020_SNP [dm6]	C	A	2.950e^-4	0.924	SYNONYMOUS_CODING CG15803	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4677708	3L_4677708_SNP [dm3] 3L_4677708_SNP [dm6]	G	A	2.960e^-4	0.924	UPSTREAM CG34266 INTRON axo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10694292	3L_10694292_SNP [dm3] 3L_10701192_SNP [dm6]	G	C	2.967e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19564919	2R_19564919_SNP [dm3] 2R_23677396_SNP [dm6]	C	G	2.968e^-4	0.924	INTRON Pde8	TF binding site mE1_TFBS_cad
3L	11168334	3L_11168334_INS [dm3] 3L_11175234_INS [dm6]	T	TGTATT	2.971e^-4	0.924	INTRON CG14142	TF binding site mE1_TFBS_cad
X	14010446	X_14010446_INS [dm3] X_14116413_INS [dm6]	T	TT	2.983e^-4	0.924	EXON CR44657	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25351951	3R_25351951_SNP [dm3] 3R_29526229_SNP [dm6]	C	A	2.983e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_inv
2L	11849731	2L_11849731_SNP [dm3] 2L_11849731_SNP [dm6]	A	C	2.984e^-4	0.924	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
2R	7611065	2R_7611065_SNP [dm3] 2R_11723560_SNP [dm6]	A	G	2.988e^-4	0.924	INTRON pyr
3R	14660016	3R_14660016_SNP [dm3] 3R_18834294_SNP [dm6]	G	A	3.000e^-4	0.924	INTRON CG18208
3R	23884709	3R_23884709_SNP [dm3] 3R_28058987_SNP [dm6]	G	A	3.017e^-4	0.924	INTRON CG34362
2L	9556615	2L_9556615_SNP [dm3] 2L_9556615_SNP [dm6]	C	T	3.024e^-4	0.924	INTRON jp
X	14756883	X_14756883_SNP [dm3] X_14862850_SNP [dm6]	C	T	3.025e^-4	0.924	DOWNSTREAM CG9518 INTRON Flo2
2R	8137681	2R_8137681_SNP [dm3] 2R_12250176_SNP [dm6]	A	C	3.035e^-4	0.924	INTERGENIC
2L	6743782	2L_6743782_INS [dm3] 2L_6743782_INS [dm6]	A	ACTA	3.035e^-4	0.924	DOWNSTREAM CG31910 INTRON CG11221
2L	7001023	2L_7001023_SNP [dm3] 2L_7001023_SNP [dm6]	T	A	3.036e^-4	0.924	INTRON uif
3R	6105675	3R_6105675_SNP [dm3] 3R_10279953_SNP [dm6]	T	A	3.037e^-4	0.924	INTRON CG43143
2L	9469843	2L_9469843_INS [dm3] 2L_9469843_INS [dm6]	A	AA	3.063e^-4	0.924	UPSTREAM CR43769 INTERGENIC
2L	11849836	2L_11849836_SNP [dm3] 2L_11849836_SNP [dm6]	T	A	3.065e^-4	0.924	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
3L	17597624	3L_17597624_SNP [dm3] 3L_17604524_SNP [dm6]	G	C	3.076e^-4	0.924	INTRON Eip74EF
3R	25753279	3R_25753279_SNP [dm3] 3R_29927557_SNP [dm6]	G	T	3.080e^-4	0.924	UTR_5_PRIME CG15522 INTRON CG15522
2R	14086288	2R_14086288_SNP [dm3] 2R_18198783_SNP [dm6]	A	C	3.084e^-4	0.924	INTERGENIC
X	15135061	X_15135061_SNP [dm3] X_15241028_SNP [dm6]	G	C	3.089e^-4	0.924	INTERGENIC
X	12795363	X_12795363_SNP [dm3] X_12901330_SNP [dm6]	A	T	3.095e^-4	0.924	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	17440898	X_17440898_SNP [dm3] X_17546865_SNP [dm6]	A	T	3.101e^-4	0.924	INTRON CG43658
X	14182736	X_14182736_SNP [dm3] X_14288703_SNP [dm6]	A	G	3.102e^-4	0.924	DOWNSTREAM Muc12Ea INTRON CG9400	TF binding site mE1_TFBS_HSA
2L	10090429	2L_10090429_SNP [dm3] 2L_10090429_SNP [dm6]	C	T	3.109e^-4	0.924	DOWNSTREAM CG13133 INTRON CG44153
3L	12834570	3L_12834570_SNP [dm3] 3L_12841470_SNP [dm6]	G	A	3.110e^-4	0.924	INTRON CG10960
X	4094020	X_4094020_SNP [dm3] X_4199987_SNP [dm6]	T	C	3.132e^-4	0.924	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	11982358	3R_11982358_SNP [dm3] 3R_16156636_SNP [dm6]	A	G	3.133e^-4	0.924	INTRON CG6006
3R	21683558	3R_21683558_SNP [dm3] 3R_25857836_SNP [dm6]	T	A	3.133e^-4	0.924	INTRON CG5890
3L	5492925	3L_5492925_SNP [dm3] 3L_5499825_SNP [dm6]	T	G	3.134e^-4	0.924	UPSTREAM blanks EXON CR44518	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12157677	3L_12157677_SNP [dm3] 3L_12164577_SNP [dm6]	A	G	3.141e^-4	0.924	UTR_3_PRIME Rh7 UPSTREAM CG9760	TF binding site mE1_TFBS_HSA
3R	4401702	3R_4401702_DEL [dm3] 3R_8575980_DEL [dm6]	GCATTTGCGGCTGATTAAAG...	G	3.153e^-4	0.924	INTERGENIC
2R	8366274	2R_8366274_SNP [dm3] 2R_12478769_SNP [dm6]	C	A	3.158e^-4	0.924	INTRON Dh44-R2
3R	10435085	3R_10435085_SNP [dm3] 3R_14609363_SNP [dm6]	G	T	3.159e^-4	0.924	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	4937644	3R_4937644_SNP [dm3] 3R_9111922_SNP [dm6]	A	T	3.162e^-4	0.924	INTRON pum
3L	12155898	3L_12155898_SNP [dm3] 3L_12162798_SNP [dm6]	T	C	3.171e^-4	0.924	INTRON CG9760
X	14756934	X_14756934_SNP [dm3] X_14862901_SNP [dm6]	T	G	3.178e^-4	0.924	DOWNSTREAM CG9518 INTRON Flo2
3R	25799111	3R_25799111_SNP [dm3] 3R_29973389_SNP [dm6]	G	A	3.184e^-4	0.924	INTERGENIC
2R	16289150	2R_16289150_SNP [dm3] 2R_20401645_SNP [dm6]	G	A	3.185e^-4	0.924	INTERGENIC
3L	17603716	3L_17603716_SNP [dm3] 3L_17610616_SNP [dm6]	T	G	3.193e^-4	0.924	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl
2R	11339584	2R_11339584_SNP [dm3] 2R_15452079_SNP [dm6]	G	C	3.194e^-4	0.924	INTRON CG43729
X	12795333	X_12795333_DEL [dm3] X_12901300_DEL [dm6]	AC	A	3.204e^-4	0.924	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	12795340	X_12795340_DEL [dm3] X_12901307_DEL [dm6]	ACAACT	A	3.204e^-4	0.924	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	16159663	3L_16159663_SNP [dm3] 3L_16166563_SNP [dm6]	C	A	3.206e^-4	0.924	INTERGENIC
2L	1210136	2L_1210136_SNP [dm3] 2L_1210136_SNP [dm6]	T	A	3.216e^-4	0.924	INTERGENIC
3R	23320228	3R_23320228_INS [dm3] 3R_27494506_INS [dm6]	T	TT	3.221e^-4	0.924	INTERGENIC
3R	23320230	3R_23320230_SNP [dm3] 3R_27494508_SNP [dm6]	G	T	3.221e^-4	0.924	INTERGENIC
X	8292927	X_8292927_SNP [dm3] X_8398894_SNP [dm6]	T	C	3.227e^-4	0.924	UPSTREAM CG10555 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20214765	2R_20214765_SNP [dm3] 2R_24327242_SNP [dm6]	C	A	3.230e^-4	0.924	INTRON CR44810
2L	21055222	2L_21055222_SNP [dm3] 2L_21055222_SNP [dm6]	A	T	3.231e^-4	0.924	NON_SYNONYMOUS_CODING Itgbetanu	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	12633063	2R_12633063_SNP [dm3] 2R_16745558_SNP [dm6]	G	A	3.235e^-4	0.924	UTR_3_PRIME CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad
X	12021418	X_12021418_INS [dm3] X_12127385_INS [dm6]	A	AAA	3.236e^-4	0.924	UPSTREAM Ten-a INTRON Ten-a
3L	5861516	3L_5861516_SNP [dm3] 3L_5868416_SNP [dm6]	C	A	3.238e^-4	0.924	INTERGENIC
2R	20022330	2R_20022330_SNP [dm3] 2R_24134807_SNP [dm6]	G	A	3.250e^-4	0.924	SYNONYMOUS_CODING Zfrp8 DOWNSTREAM CG4065	TF binding site mE1_TFBS_sens
2L	9426770	2L_9426770_SNP [dm3] 2L_9426770_SNP [dm6]	A	G	3.257e^-4	0.924	UPSTREAM Fbp2 DOWNSTREAM Mco1 INTERGENIC
3R	10432023	3R_10432023_SNP [dm3] 3R_14606301_SNP [dm6]	A	G	3.258e^-4	0.924	SYNONYMOUS_CODING stumps
2R	10926354	2R_10926354_SNP [dm3] 2R_15038849_SNP [dm6]	T	A	3.262e^-4	0.924	INTRON hbs
3L	11532947	3L_11532947_SNP [dm3] 3L_11539847_SNP [dm6]	A	G	3.267e^-4	0.924	INTRON Mob2
3R	13103400	3R_13103400_SNP [dm3] 3R_17277678_SNP [dm6]	A	G	3.274e^-4	0.924	INTERGENIC
3R	4854706	3R_4854706_SNP [dm3] 3R_9028984_SNP [dm6]	C	T	3.277e^-4	0.924	INTRON neur	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	4872056	3R_4872056_SNP [dm3] 3R_9046334_SNP [dm6]	C	T	3.277e^-4	0.924	INTRON Nmdmc & 1 other
2L	13806809	2L_13806809_SNP [dm3] 2L_13806809_SNP [dm6]	T	C	3.280e^-4	0.924	INTRON CAH1
3R	4869091	3R_4869091_SNP [dm3] 3R_9043369_SNP [dm6]	G	T	3.280e^-4	0.924	SYNONYMOUS_CODING Nmdmc DOWNSTREAM Rel	TF binding site mE1_TFBS_chinmo
X	19401915	X_19401915_SNP [dm3] X_19507882_SNP [dm6]	C	T	3.283e^-4	0.924	SYNONYMOUS_CODING Pfrx INTRON CG14200	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17347131	3R_17347131_SNP [dm3] 3R_21521409_SNP [dm6]	C	G	3.292e^-4	0.924	INTRON CG7956	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	20396321	3R_20396321_SNP [dm3] 3R_24570599_SNP [dm6]	T	A	3.304e^-4	0.924	INTRON CG13624
3R	19808689	3R_19808689_DEL [dm3] 3R_23982967_DEL [dm6]	AA	A	3.309e^-4	0.924	UTR_3_PRIME CG31140 UPSTREAM CR31451	TF binding site BDTNP1_TFBS_dl
3R	18739202	3R_18739202_SNP [dm3] 3R_22913480_SNP [dm6]	A	T	3.310e^-4	0.924	INTRON klg
X	21069769	X_21069769_INS [dm3] X_21198742_INS [dm6]	C	CTCTAATTCCGCACCGCCGT...	3.316e^-4	0.924	INTERGENIC
2R	7961258	2R_7961258_SNP [dm3] 2R_12073753_SNP [dm6]	A	G	3.318e^-4	0.924	INTRON CG8888
3R	21344585	3R_21344585_SNP [dm3] 3R_25518863_SNP [dm6]	G	T	3.320e^-4	0.924	INTRON msi	TF binding site mE1_TFBS_Trl
3R	9959340	3R_9959340_SNP [dm3] 3R_14133618_SNP [dm6]	C	T	3.323e^-4	0.924	INTERGENIC
3R	25089055	3R_25089055_SNP [dm3] 3R_29263333_SNP [dm6]	A	G	3.326e^-4	0.924	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
X	18430662	X_18430662_SNP [dm3] X_18536629_SNP [dm6]	G	A	3.333e^-4	0.924	INTRON Bx
3L	17596771	3L_17596771_SNP [dm3] 3L_17603671_SNP [dm6]	C	G	3.348e^-4	0.924	INTRON Eip74EF
3L	17596795	3L_17596795_SNP [dm3] 3L_17603695_SNP [dm6]	T	G	3.348e^-4	0.924	INTRON Eip74EF
3R	4869021	3R_4869021_SNP [dm3] 3R_9043299_SNP [dm6]	C	T	3.367e^-4	0.924	NON_SYNONYMOUS_CODING Nmdmc DOWNSTREAM hyx & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10646823	2R_10646823_SNP [dm3] 2R_14759318_SNP [dm6]	A	G	3.374e^-4	0.924	NON_SYNONYMOUS_CODING CG12857 DOWNSTREAM Spred	TF binding site mE1_TFBS_cad
3R	11459568	3R_11459568_SNP [dm3] 3R_15633846_SNP [dm6]	G	T	3.374e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_Kr
X	4091100	X_4091100_SNP [dm3] X_4197067_SNP [dm6]	G	C	3.374e^-4	0.924	INTRON Fas2
X	8292916	X_8292916_SNP [dm3] X_8398883_SNP [dm6]	C	G	3.379e^-4	0.924	UPSTREAM CG10555 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15115840	3L_15115840_SNP [dm3] 3L_15122740_SNP [dm6]	G	A	3.380e^-4	0.924	SYNONYMOUS_CODING CG16959 DOWNSTREAM CG32847 INTRON Cep135
2L	21846992	2L_21846992_SNP [dm3] 2L_21846992_SNP [dm6]	A	C	3.382e^-4	0.924	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	4825728	3R_4825728_SNP [dm3] 3R_9000006_SNP [dm6]	G	A	3.382e^-4	0.924	INTRON CG31100
2R	9131360	2R_9131360_SNP [dm3] 2R_13243855_SNP [dm6]	C	T	3.389e^-4	0.924	DOWNSTREAM CR45278 INTERGENIC
2L	4784697	2L_4784697_SNP [dm3] 2L_4784697_SNP [dm6]	G	T	3.391e^-4	0.924	INTRON CG15630
X	5115825	X_5115825_SNP [dm3] X_5221792_SNP [dm6]	A	G	3.394e^-4	0.924	INTRON CG15465 & 1 other
2R	18542624	2R_18542624_SNP [dm3] 2R_22655119_SNP [dm6]	A	T	3.398e^-4	0.924	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other INTRON CG30196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	15209364	3L_15209364_SNP [dm3] 3L_15216264_SNP [dm6]	T	A	3.405e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13241861	3L_13241861_SNP [dm3] 3L_13248761_SNP [dm6]	G	A	3.410e^-4	0.924	UPSTREAM tRNA:D2:69F & 1 other INTRON caps
2R	6017234	2R_6017234_SNP [dm3] 2R_10129729_SNP [dm6]	T	C	3.411e^-4	0.924	INTRON gem
2R	10654540	2R_10654540_SNP [dm3] 2R_14767035_SNP [dm6]	T	A	3.414e^-4	0.924	INTRON Spred
3R	16035576	3R_16035576_DEL [dm3] 3R_20209854_DEL [dm6]	TTAATTCTGCTCAAAAGTTT...	T	3.416e^-4	0.924	UPSTREAM CG17199 INTRON Nlg4
3L	2645026	3L_2645026_SNP [dm3] 3L_2645026_SNP [dm6]	T	A	3.418e^-4	0.924	UPSTREAM CG1143 INTERGENIC
X	12795213	X_12795213_SNP [dm3] X_12901180_SNP [dm6]	C	T	3.444e^-4	0.924	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	15205470	3L_15205470_SNP [dm3] 3L_15212370_SNP [dm6]	T	C	3.456e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7987942	3R_7987942_SNP [dm3] 3R_12162220_SNP [dm6]	A	G	3.459e^-4	0.924	DOWNSTREAM Cpn INTERGENIC
3R	13472988	3R_13472988_SNP [dm3] 3R_17647266_SNP [dm6]	A	C	3.460e^-4	0.924	UPSTREAM CG14322 & 1 other DOWNSTREAM tRNA:CR31579 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	18378494	2L_18378494_SNP [dm3] 2L_18378494_SNP [dm6]	G	T	3.472e^-4	0.924	UPSTREAM CG34171 INTRON Fas3
2R	14451040	2R_14451040_SNP [dm3] 2R_18563535_SNP [dm6]	A	G	3.487e^-4	0.924	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8072011	2L_8072011_SNP [dm3] 2L_8072011_SNP [dm6]	G	T	3.489e^-4	0.924	SYNONYMOUS_CODING MED20 UPSTREAM poe & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	11927532	3L_11927532_SNP [dm3] 3L_11934432_SNP [dm6]	G	T	3.490e^-4	0.924	SYNONYMOUS_CODING byn INTRON CG44837	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8042792	X_8042792_SNP [dm3] X_8148759_SNP [dm6]	G	A	3.495e^-4	0.924	UPSTREAM CG10959 DOWNSTREAM CG2129 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	2172990	3L_2172990_SNP [dm3] 3L_2172990_SNP [dm6]	T	C	3.495e^-4	0.924	UPSTREAM CR15821 DOWNSTREAM CG15820 INTERGENIC	TF binding site mE1_TFBS_cad
3L	24442378	3L_24442378_DEL [dm3] 3L_24449278_DEL [dm6]	AA	A	3.505e^-4	0.924	INTERGENIC
X	8186110	X_8186110_SNP [dm3] X_8292077_SNP [dm6]	T	C	3.511e^-4	0.924	INTRON nAChRalpha3
3R	11982389	3R_11982389_DEL [dm3] 3R_16156667_DEL [dm6]	GATGAATG	G	3.514e^-4	0.924	INTRON CG6006
2L	14748984	2L_14748984_SNP [dm3] 2L_14748984_SNP [dm6]	G	T	3.526e^-4	0.924	INTERGENIC
2L	4161378	2L_4161378_SNP [dm3] 2L_4161378_SNP [dm6]	T	C	3.531e^-4	0.924	INTERGENIC
3L	4492063	3L_4492063_SNP [dm3] 3L_4492063_SNP [dm6]	G	T	3.533e^-4	0.924	INTERGENIC
3L	17596789	3L_17596789_SNP [dm3] 3L_17603689_SNP [dm6]	G	A	3.535e^-4	0.924	INTRON Eip74EF
3R	21227202	3R_21227202_DEL [dm3] 3R_25401480_DEL [dm6]	TATT	T	3.537e^-4	0.924	UPSTREAM Muc96D INTRON Fur1
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	3.547e^-4	0.924	INTRON dnc
2L	1310440	2L_1310440_SNP [dm3] 2L_1310440_SNP [dm6]	G	T	3.556e^-4	0.924	INTERGENIC
2L	5499667	2L_5499667_SNP [dm3] 2L_5499667_SNP [dm6]	T	C	3.558e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7615841	2L_7615841_SNP [dm3] 2L_7615841_SNP [dm6]	C	T	3.559e^-4	0.924	SYNONYMOUS_CODING CG6739 UTR_3_PRIME CG6739
2L	16756187	2L_16756187_SNP [dm3] 2L_16756187_SNP [dm6]	A	C	3.560e^-4	0.924	INTRON yellow-b
3L	15213703	3L_15213703_SNP [dm3] 3L_15220603_SNP [dm6]	C	T	3.564e^-4	0.924	INTERGENIC
X	9741050	X_9741050_SNP [dm3] X_9847017_SNP [dm6]	C	T	3.566e^-4	0.924	INTRON CG32698
3R	21344893	3R_21344893_SNP [dm3] 3R_25519171_SNP [dm6]	T	A	3.566e^-4	0.924	INTRON msi
X	5064424	X_5064424_SNP [dm3] X_5170391_SNP [dm6]	G	A	3.567e^-4	0.924	INTRON rg & 1 other
3R	7912250	3R_7912250_SNP [dm3] 3R_12086528_SNP [dm6]	T	G	3.575e^-4	0.924	INTRON CG14741	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	19448906	3L_19448906_SNP [dm3] 3L_19455806_SNP [dm6]	A	G	3.576e^-4	0.924	DOWNSTREAM CR45434 INTERGENIC
3R	3720934	3R_3720934_SNP [dm3] 3R_7895212_SNP [dm6]	C	A	3.578e^-4	0.924	UPSTREAM wtrw INTRON mRpS9 & 1 other
3R	6554332	3R_6554332_SNP [dm3] 3R_10728610_SNP [dm6]	A	G	3.579e^-4	0.924	INTERGENIC
3L	22902245	3L_22902245_SNP [dm3] 3L_22909145_SNP [dm6]	T	A	3.580e^-4	0.924	UPSTREAM CR45661 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	9895271	3L_9895271_SNP [dm3] 3L_9902171_SNP [dm6]	G	A	3.580e^-4	0.924	NON_SYNONYMOUS_CODING nudE SYNONYMOUS_CODING nudE DOWNSTREAM nudE
X	4513872	X_4513872_INS [dm3] X_4619839_INS [dm6]	CG	ATCTCTTATT	3.593e^-4	0.924	INTRON peb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	9127794	X_9127794_SNP [dm3] X_9233761_SNP [dm6]	C	G	3.595e^-4	0.924	SYNONYMOUS_CODING Ir8a	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	1196886	X_1196886_SNP [dm3] X_1302853_SNP [dm6]	T	C	3.596e^-4	0.924	INTRON DAAM	TF binding site mE1_TFBS_chinmo
2L	21802262	2L_21802262_SNP [dm3] 2L_21802262_SNP [dm6]	A	G	3.599e^-4	0.924	INTERGENIC
X	11103011	X_11103011_SNP [dm3] X_11208978_SNP [dm6]	A	T	3.605e^-4	0.924	INTERGENIC
2L	13399308	2L_13399308_SNP [dm3] 2L_13399308_SNP [dm6]	T	C	3.605e^-4	0.924	NON_SYNONYMOUS_CODING CG7110 UPSTREAM CG10859 EXON CR44600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3R	25212391	3R_25212391_SNP [dm3] 3R_29386669_SNP [dm6]	C	T	3.609e^-4	0.924	INTRON Ptp99A	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
3L	8362346	3L_8362346_SNP [dm3] 3L_8369246_SNP [dm6]	C	T	3.617e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	2644859	3L_2644859_SNP [dm3] 3L_2644859_SNP [dm6]	C	T	3.620e^-4	0.924	UPSTREAM CG1143 INTERGENIC
2R	4076050	2R_4076050_SNP [dm3] 2R_8188545_SNP [dm6]	G	A	3.624e^-4	0.924	INTRON LRP1	TF binding site mE1_TFBS_cad
2L	9504688	2L_9504688_SNP [dm3] 2L_9504688_SNP [dm6]	G	A	3.625e^-4	0.924	SYNONYMOUS_CODING CG33298
3L	12816034	3L_12816034_SNP [dm3] 3L_12822934_SNP [dm6]	G	A	3.630e^-4	0.924	INTRON CG42588
3R	4575142	3R_4575142_SNP [dm3] 3R_8749420_SNP [dm6]	A	T	3.659e^-4	0.924	UTR_3_PRIME CG34135 & 1 other INTRON CG8223	TF binding site BDTNP1_TFBS_twi
X	2689994	X_2689994_SNP [dm3] X_2795961_SNP [dm6]	G	A	3.667e^-4	0.924	INTRON kirre & 1 other	regulatory region REDfly_CRMs
X	2690011	X_2690011_SNP [dm3] X_2795978_SNP [dm6]	G	A	3.667e^-4	0.924	INTRON kirre & 1 other	regulatory region REDfly_CRMs
X	2690031	X_2690031_SNP [dm3] X_2795998_SNP [dm6]	A	G	3.667e^-4	0.924	INTRON kirre & 1 other	regulatory region REDfly_CRMs
2L	4933994	2L_4933994_SNP [dm3] 2L_4933994_SNP [dm6]	T	A	3.671e^-4	0.924	INTRON hoe2
3L	3547802	3L_3547802_SNP [dm3] 3L_3547802_SNP [dm6]	C	A	3.685e^-4	0.924	INTRON Eip63E
3R	4850048	3R_4850048_SNP [dm3] 3R_9024326_SNP [dm6]	C	A	3.691e^-4	0.924	DOWNSTREAM CR31429 INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	11251034	2R_11251034_INS [dm3] 2R_15363529_INS [dm6]	A	ATA	3.708e^-4	0.924	INTRON unc-5
2R	16867034	2R_16867034_SNP [dm3] 2R_20979529_SNP [dm6]	T	C	3.717e^-4	0.924	SYNONYMOUS_CODING CG9313 UPSTREAM CG15650
3L	1707806	3L_1707806_SNP [dm3] 3L_1707806_SNP [dm6]	G	C	3.718e^-4	0.924	INTRON CG7991
X	12795209	X_12795209_SNP [dm3] X_12901176_SNP [dm6]	G	T	3.718e^-4	0.924	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	3208928	3R_3208928_SNP [dm3] 3R_7383206_SNP [dm6]	C	A	3.720e^-4	0.924	INTERGENIC
X	8246368	X_8246368_SNP [dm3] X_8352335_SNP [dm6]	A	G	3.726e^-4	0.924	INTRON nAChRalpha3
2L	2614952	2L_2614952_SNP [dm3] 2L_2614952_SNP [dm6]	A	T	3.728e^-4	0.924	INTERGENIC
3R	14933478	3R_14933478_SNP [dm3] 3R_19107756_SNP [dm6]	T	A	3.729e^-4	0.924	INTRON CG6040
2R	20993976	2R_20993976_SNP [dm3] 2R_25106453_SNP [dm6]	C	T	3.730e^-4	0.924	INTRON lov
3L	4545925	3L_4545925_SNP [dm3] 3L_4545925_SNP [dm6]	C	A	3.738e^-4	0.924	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	5709131	3R_5709131_SNP [dm3] 3R_9883409_SNP [dm6]	C	G	3.740e^-4	0.924	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18542213	2R_18542213_SNP [dm3] 2R_22654708_SNP [dm6]	A	C	3.742e^-4	0.924	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG30196 & 2 others INTERGENIC	TF binding site mE1_TFBS_cad
X	2690048	X_2690048_SNP [dm3] X_2796015_SNP [dm6]	A	C	3.742e^-4	0.924	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	4737895	3L_4737895_SNP [dm3] 3L_4737895_SNP [dm6]	A	G	3.744e^-4	0.924	INTRON RhoGEF64C
3R	18478605	3R_18478605_SNP [dm3] 3R_22652883_SNP [dm6]	T	A	3.744e^-4	0.924	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3780919	2L_3780919_SNP [dm3] 2L_3780919_SNP [dm6]	C	T	3.758e^-4	0.924	INTRON bowl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	19402422	X_19402422_SNP [dm3] X_19508389_SNP [dm6]	C	G	3.764e^-4	0.924	SYNONYMOUS_CODING Pfrx INTRON CG14200	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve
3R	24788922	3R_24788922_SNP [dm3] 3R_28963200_SNP [dm6]	A	C	3.771e^-4	0.924	INTRON CG14521
X	3779608	X_3779608_SNP [dm3] X_3885575_SNP [dm6]	A	G	3.774e^-4	0.924	INTRON CG15239
X	14182626	X_14182626_SNP [dm3] X_14288593_SNP [dm6]	G	A	3.775e^-4	0.924	DOWNSTREAM Muc12Ea INTRON CG9400
2R	16864219	2R_16864219_SNP [dm3] 2R_20976714_SNP [dm6]	G	A	3.783e^-4	0.924	UPSTREAM CG9344 DOWNSTREAM CG15650 INTRON CG34115	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	10437715	3R_10437715_SNP [dm3] 3R_14611993_SNP [dm6]	G	C	3.786e^-4	0.924	INTRON CG14853
3L	19492492	3L_19492492_SNP [dm3] 3L_19499392_SNP [dm6]	T	G	3.787e^-4	0.924	NON_SYNONYMOUS_CODING CG9451
2R	7961237	2R_7961237_SNP [dm3] 2R_12073732_SNP [dm6]	G	A	3.796e^-4	0.924	INTRON CG8888
3R	25989868	3R_25989868_SNP [dm3] 3R_30164146_SNP [dm6]	T	C	3.804e^-4	0.924	DOWNSTREAM CG31030 INTERGENIC
3R	20225939	3R_20225939_SNP [dm3] 3R_24400217_SNP [dm6]	G	T	3.820e^-4	0.924	UTR_3_PRIME nAChRalpha1 DOWNSTREAM nAChRalpha1
X	9686314	X_9686314_SNP [dm3] X_9792281_SNP [dm6]	C	A	3.827e^-4	0.924	INTRON CG32698
3L	21410303	3L_21410303_SNP [dm3] 3L_21417203_SNP [dm6]	G	T	3.828e^-4	0.924	INTRON rgn
2L	15192404	2L_15192404_SNP [dm3] 2L_15192404_SNP [dm6]	G	A	3.833e^-4	0.924	INTRON CG4168
3R	25351984	3R_25351984_SNP [dm3] 3R_29526262_SNP [dm6]	A	G	3.838e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_inv
2L	11686657	2L_11686657_SNP [dm3] 2L_11686657_SNP [dm6]	T	C	3.842e^-4	0.924	INTERGENIC
2R	18010238	2R_18010238_SNP [dm3] 2R_22122733_SNP [dm6]	C	T	3.842e^-4	0.924	UPSTREAM mei-S332 & 1 other INTRON mei-S332	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19010561	3R_19010561_SNP [dm3] 3R_23184839_SNP [dm6]	G	A	3.846e^-4	0.924	SYNONYMOUS_CODING Irk1 DOWNSTREAM cnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5557570	2L_5557570_SNP [dm3] 2L_5557570_SNP [dm6]	T	A	3.863e^-4	0.924	INTRON GluRIIA
2L	648426	2L_648426_SNP [dm3] 2L_648426_SNP [dm6]	C	T	3.867e^-4	0.924	INTRON ds
2L	1025582	2L_1025582_SNP [dm3] 2L_1025582_SNP [dm6]	T	C	3.869e^-4	0.924	DOWNSTREAM CG4375 INTRON IA-2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13274963	3L_13274963_SNP [dm3] 3L_13281863_SNP [dm6]	T	C	3.871e^-4	0.924	UPSTREAM CR43146 INTERGENIC
2R	18004262	2R_18004262_SNP [dm3] 2R_22116757_SNP [dm6]	G	T	3.875e^-4	0.924	UPSTREAM Vrp1 DOWNSTREAM CG30281 INTRON Vrp1
X	21103882	X_21103882_SNP [dm3] X_21232855_SNP [dm6]	C	T	3.877e^-4	0.924	DOWNSTREAM tRNA:R:19F INTRON CG32521	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9444160	2L_9444160_SNP [dm3] 2L_9444160_SNP [dm6]	T	A	3.881e^-4	0.924	INTRON numb
2L	19480177	2L_19480177_SNP [dm3] 2L_19480177_SNP [dm6]	A	G	3.885e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	4341466	3R_4341466_INS [dm3] 3R_8515744_INS [dm6]	T	TT	3.887e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	16869940	2R_16869940_SNP [dm3] 2R_20982435_SNP [dm6]	T	C	3.887e^-4	0.924	SYNONYMOUS_CODING CG9313	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13300662	3L_13300662_SNP [dm3] 3L_13307562_SNP [dm6]	G	C	3.887e^-4	0.924	INTERGENIC
3L	13300663	3L_13300663_SNP [dm3] 3L_13307563_SNP [dm6]	C	A	3.887e^-4	0.924	INTERGENIC
X	10719310	X_10719310_DEL [dm3] X_10825277_DEL [dm6]	AA	A	3.891e^-4	0.924	DOWNSTREAM CR45624 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7025374	2L_7025374_SNP [dm3] 2L_7025374_SNP [dm6]	G	A	3.905e^-4	0.924	SYNONYMOUS_CODING CG31908	TF binding site mE1_TFBS_cad
2L	588419	2L_588419_SNP [dm3] 2L_588419_SNP [dm6]	T	A	3.906e^-4	0.924	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
3L	1989717	3L_1989717_SNP [dm3] 3L_1989717_SNP [dm6]	A	G	3.906e^-4	0.924	INTERGENIC
2L	4816080	2L_4816080_SNP [dm3] 2L_4816080_SNP [dm6]	A	C	3.913e^-4	0.924	SYNONYMOUS_CODING CG3225 DOWNSTREAM CG15629	TF binding site mE1_TFBS_inv
3R	12744477	3R_12744477_SNP [dm3] 3R_16918755_SNP [dm6]	A	T	3.918e^-4	0.924	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	14749075	2L_14749075_SNP [dm3] 2L_14749075_SNP [dm6]	A	G	3.932e^-4	0.924	INTERGENIC
2L	414406	2L_414406_SNP [dm3] 2L_414406_SNP [dm6]	T	A	3.932e^-4	0.924	UPSTREAM ebi INTRON AP-2alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	8010198	3L_8010198_SNP [dm3] 3L_8017098_SNP [dm6]	A	C	3.933e^-4	0.924	INTRON nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	7332228	2R_7332228_SNP [dm3] 2R_11444723_SNP [dm6]	G	A	3.942e^-4	0.924	SYNONYMOUS_CODING qvr
2L	16756186	2L_16756186_SNP [dm3] 2L_16756186_SNP [dm6]	A	T	3.946e^-4	0.924	INTRON yellow-b
2L	5548115	2L_5548115_SNP [dm3] 2L_5548115_SNP [dm6]	C	T	3.948e^-4	0.924	INTRON Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	9961071	2R_9961071_SNP [dm3] 2R_14073566_SNP [dm6]	A	G	3.950e^-4	0.924	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	7938431	3L_7938431_SNP [dm3] 3L_7945331_SNP [dm6]	G	A	3.964e^-4	0.924	DOWNSTREAM CG43880 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9131332	2R_9131332_SNP [dm3] 2R_13243827_SNP [dm6]	G	T	3.968e^-4	0.924	DOWNSTREAM CR45278 INTERGENIC
X	3172280	X_3172280_SNP [dm3] X_3278247_SNP [dm6]	T	G	3.974e^-4	0.924	INTRON dnc
X	21928587	X_21928587_SNP [dm3] X_22526751_SNP [dm6]	T	C	3.975e^-4	0.924	INTRON CG17600
3L	2655053	3L_2655053_SNP [dm3] 3L_2655053_SNP [dm6]	G	C	3.983e^-4	0.924	NON_SYNONYMOUS_CODING CG42304 UTR_3_PRIME Snup DOWNSTREAM Fife
3L	2202400	3L_2202400_SNP [dm3] 3L_2202400_SNP [dm6]	A	T	3.988e^-4	0.924	INTERGENIC
3R	17953465	3R_17953465_SNP [dm3] 3R_22127743_SNP [dm6]	T	G	3.990e^-4	0.924	INTRON CG42390
2L	1091466	2L_1091466_DEL [dm3] 2L_1091466_DEL [dm6]	AATTAATTAGTTTTTA...	A	3.990e^-4	0.924	INTRON CG4629
3R	4854709	3R_4854709_SNP [dm3] 3R_9028987_SNP [dm6]	A	G	3.996e^-4	0.924	INTRON neur	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	17920112	2R_17920112_SNP [dm3] 2R_22032607_SNP [dm6]	G	T	3.999e^-4	0.924	INTRON CG34370
X	16791357	X_16791357_SNP [dm3] X_16897324_SNP [dm6]	G	T	3.999e^-4	0.924	UPSTREAM CG33252 INTERGENIC
X	16685557	X_16685557_SNP [dm3] X_16791524_SNP [dm6]	T	A	4.001e^-4	0.924	UPSTREAM CG4768 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8447278	2L_8447278_SNP [dm3] 2L_8447278_SNP [dm6]	T	G	4.003e^-4	0.924	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	13610690	2L_13610690_SNP [dm3] 2L_13610690_SNP [dm6]	C	G	4.006e^-4	0.924	DOWNSTREAM mir-2489 INTRON kuz
X	12795198	X_12795198_SNP [dm3] X_12901165_SNP [dm6]	G	A	4.009e^-4	0.924	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	18575735	3L_18575735_SNP [dm3] 3L_18582635_SNP [dm6]	C	A	4.014e^-4	0.924	UPSTREAM CR45435 INTERGENIC
3L	14385310	3L_14385310_INS [dm3] 3L_14392210_INS [dm6]	T	TGCTCTTAA	4.015e^-4	0.924	INTERGENIC
X	14829716	X_14829716_SNP [dm3] X_14935683_SNP [dm6]	G	A	4.016e^-4	0.924	INTRON pdgy
3R	16828758	3R_16828758_INS [dm3] 3R_21003036_INS [dm6]	T	TTCCAAGT	4.016e^-4	0.924	INTRON Calx
3R	12744740	3R_12744740_SNP [dm3] 3R_16919018_SNP [dm6]	C	T	4.019e^-4	0.924	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	17678420	2R_17678420_SNP [dm3] 2R_21790915_SNP [dm6]	A	G	4.028e^-4	0.924	SYNONYMOUS_CODING lox2
3R	4349280	3R_4349280_SNP [dm3] 3R_8523558_SNP [dm6]	T	C	4.031e^-4	0.924	UPSTREAM CG31259 DOWNSTREAM CG31454 INTERGENIC
2R	10963282	2R_10963282_SNP [dm3] 2R_15075777_SNP [dm6]	A	G	4.032e^-4	0.924	INTERGENIC
2R	20935015	2R_20935015_SNP [dm3] 2R_25047492_SNP [dm6]	C	G	4.035e^-4	0.924	INTRON gsb-n	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
3L	1408353	3L_1408353_SNP [dm3] 3L_1408353_SNP [dm6]	T	C	4.042e^-4	0.924	INTRON Ptp61F
X	3376671	X_3376671_SNP [dm3] X_3482638_SNP [dm6]	G	A	4.049e^-4	0.924	UPSTREAM CG10802 & 1 other INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	13417391	2L_13417391_SNP [dm3] 2L_13417391_SNP [dm6]	C	G	4.050e^-4	0.924	INTRON CG43850 & 1 other
3R	26595185	3R_26595185_SNP [dm3] 3R_30769463_SNP [dm6]	T	C	4.061e^-4	0.924	INTRON zfh1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18271525	3L_18271525_SNP [dm3] 3L_18278425_SNP [dm6]	T	A	4.065e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	6216324	X_6216324_SNP [dm3] X_6322291_SNP [dm6]	G	A	4.070e^-4	0.924	INTRON CG15894
3L	2645600	3L_2645600_SNP [dm3] 3L_2645600_SNP [dm6]	A	T	4.079e^-4	0.924	INTRON CG1143	TF binding site mE1_TFBS_cad
2L	13396124	2L_13396124_SNP [dm3] 2L_13396124_SNP [dm6]	T	G	4.080e^-4	0.924	UTR_5_PRIME CG16957 UPSTREAM RpL24 DOWNSTREAM CG10859	TF binding site mE1_TFBS_ttk
2L	10636889	2L_10636889_SNP [dm3] 2L_10636889_SNP [dm6]	C	T	4.080e^-4	0.924	INTRON CG7329
2R	18541017	2R_18541017_SNP [dm3] 2R_22653512_SNP [dm6]	C	T	4.080e^-4	0.924	SYNONYMOUS_CODING Cyp6d2 UTR_3_PRIME nsr
3R	13138620	3R_13138620_SNP [dm3] 3R_17312898_SNP [dm6]	G	A	4.084e^-4	0.924	INTERGENIC
X	15413677	X_15413677_SNP [dm3] X_15519644_SNP [dm6]	C	G	4.111e^-4	0.924	INTRON Ac13E
3L	22661314	3L_22661314_SNP [dm3] 3L_22668214_SNP [dm6]	A	G	4.126e^-4	0.924	EXON CR43270	TF binding site mE1_TFBS_chinmo
3R	24484814	3R_24484814_SNP [dm3] 3R_28659092_SNP [dm6]	G	C	4.126e^-4	0.924	INTERGENIC
3L	5801619	3L_5801619_SNP [dm3] 3L_5808519_SNP [dm6]	A	G	4.130e^-4	0.924	INTRON S6k	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	7047466	2L_7047466_SNP [dm3] 2L_7047466_SNP [dm6]	A	G	4.134e^-4	0.924	INTRON milt
2R	20945852	2R_20945852_SNP [dm3] 2R_25058329_SNP [dm6]	G	C	4.143e^-4	0.924	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_prd
3L	16325199	3L_16325199_SNP [dm3] 3L_16332099_SNP [dm6]	A	G	4.151e^-4	0.924	NON_SYNONYMOUS_CODING retinin DOWNSTREAM CG33061 & 1 other	TF binding site mE1_TFBS_cad
X	19401789	X_19401789_SNP [dm3] X_19507756_SNP [dm6]	C	T	4.162e^-4	0.924	SYNONYMOUS_CODING Pfrx INTRON CG14200	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20218412	X_20218412_SNP [dm3] X_20347385_SNP [dm6]	T	A	4.165e^-4	0.924	INTERGENIC
2L	8447265	2L_8447265_SNP [dm3] 2L_8447265_SNP [dm6]	A	G	4.167e^-4	0.924	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	4858375	3R_4858375_SNP [dm3] 3R_9032653_SNP [dm6]	G	A	4.167e^-4	0.924	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8073247	3L_8073247_SNP [dm3] 3L_8080147_SNP [dm6]	A	T	4.170e^-4	0.924	INTRON Ect4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	743080	3L_743080_SNP [dm3] 3L_743080_SNP [dm6]	T	A	4.173e^-4	0.924	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	13242965	2R_13242965_SNP [dm3] 2R_17355460_SNP [dm6]	A	T	4.173e^-4	0.924	INTRON mbl
3L	9873577	3L_9873577_SNP [dm3] 3L_9880477_SNP [dm6]	T	C	4.179e^-4	0.924	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
3R	10432020	3R_10432020_SNP [dm3] 3R_14606298_SNP [dm6]	C	T	4.186e^-4	0.924	SYNONYMOUS_CODING stumps
3R	25758889	3R_25758889_INS [dm3] 3R_29933167_INS [dm6]	G	GTTCT	4.191e^-4	0.924	UPSTREAM CG42557 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	19239618	2L_19239618_SNP [dm3] 2L_19239618_SNP [dm6]	A	G	4.193e^-4	0.924	INTERGENIC
3R	14729940	3R_14729940_SNP [dm3] 3R_18904218_SNP [dm6]	A	T	4.193e^-4	0.924	DOWNSTREAM CG14292 INTERGENIC
3L	14561384	3L_14561384_SNP [dm3] 3L_14568284_SNP [dm6]	G	A	4.197e^-4	0.924	DOWNSTREAM CG42758 INTERGENIC
X	18831086	X_18831086_SNP [dm3] X_18937053_SNP [dm6]	C	G	4.198e^-4	0.924	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15121426	2L_15121426_SNP [dm3] 2L_15121426_SNP [dm6]	G	A	4.203e^-4	0.924	DOWNSTREAM CR43853 INTERGENIC
3R	23480649	3R_23480649_SNP [dm3] 3R_27654927_SNP [dm6]	T	G	4.206e^-4	0.924	INTRON tau
3R	23652019	3R_23652019_SNP [dm3] 3R_27826297_SNP [dm6]	C	T	4.211e^-4	0.924	INTRON CG34353	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20685197	2L_20685197_SNP [dm3] 2L_20685197_SNP [dm6]	T	C	4.215e^-4	0.924	UTR_3_PRIME Hr38
2L	4149154	2L_4149154_SNP [dm3] 2L_4149154_SNP [dm6]	G	A	4.216e^-4	0.924	UPSTREAM CG2955 INTERGENIC
X	12795347	X_12795347_SNP [dm3] X_12901314_SNP [dm6]	A	T	4.216e^-4	0.924	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	17565121	X_17565121_SNP [dm3] X_17671088_SNP [dm6]	T	C	4.219e^-4	0.924	NON_SYNONYMOUS_CODING CG12990
3L	8072946	3L_8072946_SNP [dm3] 3L_8079846_SNP [dm6]	T	C	4.220e^-4	0.924	INTRON Ect4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	13105304	3R_13105304_SNP [dm3] 3R_17279582_SNP [dm6]	G	A	4.225e^-4	0.924	INTERGENIC
2R	11723213	2R_11723213_SNP [dm3] 2R_15835708_SNP [dm6]	G	A	4.233e^-4	0.924	UPSTREAM Poxn INTRON tun	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3R	20490111	3R_20490111_SNP [dm3] 3R_24664389_SNP [dm6]	G	A	4.243e^-4	0.924	UTR_5_PRIME slo	regulatory region REDfly_CRMs
3L	12146891	3L_12146891_SNP [dm3] 3L_12153791_SNP [dm6]	T	C	4.244e^-4	0.924	INTRON Nrx-IV
3R	10389487	3R_10389487_SNP [dm3] 3R_14563765_SNP [dm6]	C	T	4.245e^-4	0.924	DOWNSTREAM CG14851 & 1 other INTERGENIC
2L	18376166	2L_18376166_SNP [dm3] 2L_18376166_SNP [dm6]	C	G	4.251e^-4	0.924	INTRON Fas3
3R	11981518	3R_11981518_SNP [dm3] 3R_16155796_SNP [dm6]	G	C	4.259e^-4	0.924	INTRON CG6006	TF binding site mE1_TFBS_cad
3R	24789470	3R_24789470_SNP [dm3] 3R_28963748_SNP [dm6]	C	A	4.263e^-4	0.924	INTRON CG14521
2L	5499611	2L_5499611_SNP [dm3] 2L_5499611_SNP [dm6]	A	T	4.267e^-4	0.924	INTERGENIC
2R	13242775	2R_13242775_SNP [dm3] 2R_17355270_SNP [dm6]	A	C	4.271e^-4	0.924	INTRON mbl
2R	6038568	2R_6038568_SNP [dm3] 2R_10151063_SNP [dm6]	G	A	4.275e^-4	0.924	INTRON KCNQ	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	4929117	3R_4929117_SNP [dm3] 3R_9103395_SNP [dm6]	T	C	4.277e^-4	0.924	INTRON pum
3L	18346603	3L_18346603_SNP [dm3] 3L_18353503_SNP [dm6]	G	T	4.278e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	20492450	3R_20492450_SNP [dm3] 3R_24666728_SNP [dm6]	G	A	4.279e^-4	0.924	INTRON slo	regulatory region REDfly_CRMs
2L	9419933	2L_9419933_SNP [dm3] 2L_9419933_SNP [dm6]	G	A	4.285e^-4	0.924	INTRON Mco1
X	9816859	X_9816859_DEL [dm3] X_9922826_DEL [dm6]	CC	C	4.287e^-4	0.924	INTERGENIC
X	6898563	X_6898563_SNP [dm3] X_7004530_SNP [dm6]	T	C	4.291e^-4	0.924	DOWNSTREAM Inx2 INTRON Inx7
3R	13211899	3R_13211899_SNP [dm3] 3R_17386177_SNP [dm6]	C	A	4.308e^-4	0.924	SYNONYMOUS_CODING lute INTRON Brf & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
X	12437067	X_12437067_SNP [dm3] X_12543034_SNP [dm6]	T	A	4.318e^-4	0.924	INTRON CG43921
3L	413923	3L_413923_SNP [dm3] 3L_413923_SNP [dm6]	A	G	4.325e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	14352506	3L_14352506_SNP [dm3] 3L_14359406_SNP [dm6]	G	T	4.336e^-4	0.924	INTRON fz	TF binding site mE1_TFBS_HSA
2R	8862122	2R_8862122_SNP [dm3] 2R_12974617_SNP [dm6]	G	A	4.336e^-4	0.924	INTRON Psc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4854487	3R_4854487_SNP [dm3] 3R_9028765_SNP [dm6]	C	T	4.345e^-4	0.924	INTRON neur	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11885513	2L_11885513_SNP [dm3] 2L_11885513_SNP [dm6]	G	A	4.356e^-4	0.924	INTRON Pde1c	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18858666	2L_18858666_SNP [dm3] 2L_18858666_SNP [dm6]	G	C	4.365e^-4	0.924	UPSTREAM CG10602 DOWNSTREAM tup INTRON CG10602 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2L	10090428	2L_10090428_SNP [dm3] 2L_10090428_SNP [dm6]	G	T	4.366e^-4	0.924	DOWNSTREAM CG13133 INTRON CG44153
2R	12764153	2R_12764153_SNP [dm3] 2R_16876648_SNP [dm6]	C	T	4.367e^-4	0.924	NON_SYNONYMOUS_CODING CG8910	TF binding site mE1_TFBS_chinmo
X	6215124	X_6215124_SNP [dm3] X_6321091_SNP [dm6]	T	A	4.370e^-4	0.924	INTRON CG15894
3R	13698039	3R_13698039_SNP [dm3] 3R_17872317_SNP [dm6]	T	C	4.384e^-4	0.924	UTR_3_PRIME tinc DOWNSTREAM Rim
3L	14730053	3L_14730053_SNP [dm3] 3L_14736953_SNP [dm6]	G	T	4.386e^-4	0.924	INTRON ome
2L	20991750	2L_20991750_SNP [dm3] 2L_20991750_SNP [dm6]	A	C	4.390e^-4	0.924	INTRON CG42238
2R	11340875	2R_11340875_SNP [dm3] 2R_15453370_SNP [dm6]	C	T	4.395e^-4	0.924	INTRON CG43729
3L	2645611	3L_2645611_SNP [dm3] 3L_2645611_SNP [dm6]	C	A	4.398e^-4	0.924	INTRON CG1143	TF binding site mE1_TFBS_cad
3R	15131411	3R_15131411_SNP [dm3] 3R_19305689_SNP [dm6]	A	G	4.399e^-4	0.924	SYNONYMOUS_CODING Dl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	11621955	3L_11621955_DEL [dm3] 3L_11628855_DEL [dm6]	ATTA	G	4.401e^-4	0.924	UPSTREAM mir-3642 INTRON CG18815
3L	11621966	3L_11621966_DEL [dm3] 3L_11628866_DEL [dm6]	GCAAACAAAACTTACCT...	G	4.401e^-4	0.924	UPSTREAM mir-3642 INTRON CG18815
3L	15760226	3L_15760226_SNP [dm3] 3L_15767126_SNP [dm6]	G	A	4.404e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	17953466	3R_17953466_SNP [dm3] 3R_22127744_SNP [dm6]	C	A	4.405e^-4	0.924	INTRON CG42390
2L	3127602	2L_3127602_SNP [dm3] 2L_3127602_SNP [dm6]	G	A	4.409e^-4	0.924	SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19495062	3L_19495062_SNP [dm3] 3L_19501962_SNP [dm6]	T	A	4.411e^-4	0.924	SYNONYMOUS_CODING CG9452
3R	26197532	3R_26197532_INS [dm3] 3R_30371810_INS [dm6]	A	ACA	4.413e^-4	0.924	UTR_3_PRIME hdc
2R	11724908	2R_11724908_SNP [dm3] 2R_15837403_SNP [dm6]	C	T	4.416e^-4	0.924	INTRON tun	regulatory region REDfly_CRMs
2R	8137710	2R_8137710_SNP [dm3] 2R_12250205_SNP [dm6]	C	A	4.423e^-4	0.924	INTERGENIC
2L	12923423	2L_12923423_SNP [dm3] 2L_12923423_SNP [dm6]	T	G	4.427e^-4	0.924	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
2R	19564911	2R_19564911_SNP [dm3] 2R_23677388_SNP [dm6]	T	A	4.434e^-4	0.924	INTRON Pde8	TF binding site mE1_TFBS_cad
2R	11647915	2R_11647915_SNP [dm3] 2R_15760410_SNP [dm6]	G	A	4.438e^-4	0.924	INTRON CG30089	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5830823	3L_5830823_SNP [dm3] 3L_5837723_SNP [dm6]	C	A	4.440e^-4	0.924	INTRON vn
3R	2230509	3R_2230509_SNP [dm3] 3R_6404787_SNP [dm6]	T	C	4.440e^-4	0.924	INTRON Dmtn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	7422130	3R_7422130_SNP [dm3] 3R_11596408_SNP [dm6]	C	T	4.445e^-4	0.924	INTRON Jupiter
2R	11573868	2R_11573868_SNP [dm3] 2R_15686363_SNP [dm6]	C	T	4.445e^-4	0.924	SYNONYMOUS_CODING Ranbp11 UPSTREAM CG30082	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3L	15760221	3L_15760221_SNP [dm3] 3L_15767121_SNP [dm6]	G	C	4.452e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17957133	2L_17957133_SNP [dm3] 2L_17957133_SNP [dm6]	A	G	4.456e^-4	0.924	INTERGENIC
2L	11930641	2L_11930641_SNP [dm3] 2L_11930641_SNP [dm6]	A	G	4.478e^-4	0.924	INTERGENIC
2L	18376191	2L_18376191_SNP [dm3] 2L_18376191_SNP [dm6]	G	A	4.480e^-4	0.924	INTRON Fas3
3R	22141543	3R_22141543_SNP [dm3] 3R_26315821_SNP [dm6]	T	A	4.489e^-4	0.924	INTERGENIC
2L	17295692	2L_17295692_SNP [dm3] 2L_17295692_SNP [dm6]	C	T	4.491e^-4	0.924	INTERGENIC
2L	11421782	2L_11421782_SNP [dm3] 2L_11421782_SNP [dm6]	A	G	4.493e^-4	0.924	INTERGENIC
X	18464310	X_18464310_SNP [dm3] X_18570277_SNP [dm6]	C	T	4.494e^-4	0.924	INTRON Bx	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
X	16791323	X_16791323_SNP [dm3] X_16897290_SNP [dm6]	A	T	4.497e^-4	0.924	UPSTREAM CG33252 INTERGENIC
3L	5904291	3L_5904291_INS [dm3] 3L_5911191_INS [dm6]	T	TATGT	4.497e^-4	0.924	INTRON CG13288
3R	24499243	3R_24499243_SNP [dm3] 3R_28673521_SNP [dm6]	A	T	4.498e^-4	0.924	INTERGENIC
X	12795353	X_12795353_SNP [dm3] X_12901320_SNP [dm6]	T	A	4.503e^-4	0.924	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	14246210	2L_14246210_SNP [dm3] 2L_14246210_SNP [dm6]	C	T	4.507e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	20301160	3R_20301160_SNP [dm3] 3R_24475438_SNP [dm6]	G	C	4.507e^-4	0.924	INTERGENIC
2L	13413422	2L_13413422_SNP [dm3] 2L_13413422_SNP [dm6]	A	C	4.508e^-4	0.924	UTR_3_PRIME CG16848 DOWNSTREAM CG16956	TF binding site mE1_TFBS_cad
3L	10693458	3L_10693458_SNP [dm3] 3L_10700358_SNP [dm6]	A	C	4.517e^-4	0.924	INTERGENIC
X	4639870	X_4639870_SNP [dm3] X_4745837_SNP [dm6]	A	G	4.522e^-4	0.924	INTERGENIC
3L	14548539	3L_14548539_SNP [dm3] 3L_14555439_SNP [dm6]	A	G	4.527e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_zfh1
2R	10925565	2R_10925565_SNP [dm3] 2R_15038060_SNP [dm6]	T	A	4.537e^-4	0.924	SYNONYMOUS_CODING hbs
2L	8360270	2L_8360270_SNP [dm3] 2L_8360270_SNP [dm6]	G	A	4.537e^-4	0.924	SYNONYMOUS_CODING CG7627	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9367062	3L_9367062_SNP [dm3] 3L_9373962_SNP [dm6]	C	T	4.539e^-4	0.924	UTR_5_PRIME Hsp22 UTR_3_PRIME Hsp67Bb UPSTREAM Hsp22 DOWNSTREAM Hsp67Bb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	21975517	3R_21975517_SNP [dm3] 3R_26149795_SNP [dm6]	G	T	4.543e^-4	0.924	INTERGENIC
2R	9131432	2R_9131432_SNP [dm3] 2R_13243927_SNP [dm6]	T	C	4.549e^-4	0.924	DOWNSTREAM CR45278 INTERGENIC
3R	8477836	3R_8477836_SNP [dm3] 3R_12652114_SNP [dm6]	C	A	4.554e^-4	0.924	NON_SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_sens
3L	12162889	3L_12162889_SNP [dm3] 3L_12169789_SNP [dm6]	T	C	4.558e^-4	0.924	INTRON Rh7
X	4865897	X_4865897_INS [dm3] X_4971864_INS [dm6]	A	AGGACC	4.572e^-4	0.924	INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	3143837	3L_3143837_SNP [dm3] 3L_3143837_SNP [dm6]	G	C	4.581e^-4	0.924	UTR_5_PRIME CG1291 UPSTREAM CG11537	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	21851919	2L_21851919_INS [dm3] 2L_21851919_INS [dm6]	T	TTCT	4.587e^-4	0.924	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	16354111	3L_16354111_SNP [dm3] 3L_16361011_SNP [dm6]	T	G	4.587e^-4	0.924	INTRON CG45057
3L	15702018	3L_15702018_SNP [dm3] 3L_15708918_SNP [dm6]	C	T	4.605e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	13242799	2R_13242799_SNP [dm3] 2R_17355294_SNP [dm6]	T	G	4.612e^-4	0.924	INTRON mbl
3L	8207850	3L_8207850_SNP [dm3] 3L_8214750_SNP [dm6]	T	C	4.625e^-4	0.924	UPSTREAM CG8012 INTERGENIC
3R	8427241	3R_8427241_SNP [dm3] 3R_12601519_SNP [dm6]	A	T	4.628e^-4	0.924	INTERGENIC
3R	7342049	3R_7342049_SNP [dm3] 3R_11516327_SNP [dm6]	T	C	4.629e^-4	0.924	INTERGENIC
3L	11663028	3L_11663028_SNP [dm3] 3L_11669928_SNP [dm6]	A	G	4.632e^-4	0.924	INTRON CG32085
3L	2172991	3L_2172991_SNP [dm3] 3L_2172991_SNP [dm6]	G	A	4.635e^-4	0.924	UPSTREAM CR15821 DOWNSTREAM CG15820 INTERGENIC	TF binding site mE1_TFBS_cad
3R	10122627	3R_10122627_SNP [dm3] 3R_14296905_SNP [dm6]	A	T	4.642e^-4	0.924	INTRON CG12207
3L	11919332	3L_11919332_SNP [dm3] 3L_11926232_SNP [dm6]	A	G	4.650e^-4	0.924	INTRON CG44837	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	742989	3L_742989_SNP [dm3] 3L_742989_SNP [dm6]	C	A	4.651e^-4	0.924	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	19367828	2L_19367828_SNP [dm3] 2L_19367828_SNP [dm6]	T	G	4.659e^-4	0.924	INTERGENIC
3R	17153040	3R_17153040_SNP [dm3] 3R_21327318_SNP [dm6]	G	A	4.661e^-4	0.924	INTRON CG16791	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5321430	X_5321430_SNP [dm3] X_5427397_SNP [dm6]	C	T	4.670e^-4	0.924	UPSTREAM CG16756 DOWNSTREAM CG4165 INTERGENIC
3L	11919322	3L_11919322_SNP [dm3] 3L_11926222_SNP [dm6]	C	T	4.677e^-4	0.924	INTRON CG44837	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8697797	X_8697797_SNP [dm3] X_8803764_SNP [dm6]	A	G	4.699e^-4	0.924	INTRON Lim1
2L	13438634	2L_13438634_SNP [dm3] 2L_13438634_SNP [dm6]	G	A	4.713e^-4	0.924	SYNONYMOUS_CODING Tehao INTRON CG42784 EXON CR45683	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11270074	3L_11270074_SNP [dm3] 3L_11276974_SNP [dm6]	A	G	4.719e^-4	0.924	INTERGENIC
2R	6606815	2R_6606815_SNP [dm3] 2R_10719310_SNP [dm6]	G	A	4.726e^-4	0.924	INTRON stan
2R	11855480	2R_11855480_SNP [dm3] 2R_15967975_SNP [dm6]	G	T	4.731e^-4	0.924	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
X	2461622	X_2461622_INS [dm3] X_2567589_INS [dm6]	T	TT	4.737e^-4	0.924	INTRON Pdfr
3R	10122626	3R_10122626_SNP [dm3] 3R_14296904_SNP [dm6]	G	A	4.771e^-4	0.924	INTRON CG12207
3R	10122629	3R_10122629_SNP [dm3] 3R_14296907_SNP [dm6]	T	C	4.771e^-4	0.924	INTRON CG12207
3L	10756244	3L_10756244_SNP [dm3] 3L_10763144_SNP [dm6]	A	G	4.774e^-4	0.924	INTERGENIC
2L	11849468	2L_11849468_SNP [dm3] 2L_11849468_SNP [dm6]	C	T	4.776e^-4	0.924	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
3R	4923741	3R_4923741_SNP [dm3] 3R_9098019_SNP [dm6]	C	T	4.778e^-4	0.924	INTRON pum	TF binding site mE1_TFBS_cad
2R	9103655	2R_9103655_SNP [dm3] 2R_13216150_SNP [dm6]	G	A	4.782e^-4	0.924	DOWNSTREAM CG4627 INTRON CG4630
3R	16035710	3R_16035710_SNP [dm3] 3R_20209988_SNP [dm6]	C	A	4.784e^-4	0.924	UPSTREAM CG17199 INTRON Nlg4
2L	7197934	2L_7197934_SNP [dm3] 2L_7197934_SNP [dm6]	A	G	4.792e^-4	0.924	INTRON CG4502
2R	14150720	2R_14150720_SNP [dm3] 2R_18263215_SNP [dm6]	A	C	4.794e^-4	0.924	INTERGENIC
3L	3960013	3L_3960013_SNP [dm3] 3L_3960013_SNP [dm6]	G	A	4.797e^-4	0.924	NON_SYNONYMOUS_CODING CG12605 INTRON CG12605	TF binding site mE1_TFBS_chinmo
2R	6795339	2R_6795339_SNP [dm3] 2R_10907834_SNP [dm6]	G	T	4.798e^-4	0.924	INTERGENIC
X	12021975	X_12021975_SNP [dm3] X_12127942_SNP [dm6]	G	A	4.799e^-4	0.924	UPSTREAM Ten-a INTRON Ten-a
3L	9549976	3L_9549976_SNP [dm3] 3L_9556876_SNP [dm6]	G	A	4.807e^-4	0.924	INTRON CG42673
3R	16599411	3R_16599411_INS [dm3] 3R_20773689_INS [dm6]	A	AG	4.815e^-4	0.924	INTRON Syp	TF binding site BDTNP1_TFBS_twi
2L	10082350	2L_10082350_SNP [dm3] 2L_10082350_SNP [dm6]	G	T	4.825e^-4	0.924	INTRON CG44153	TF binding site mE1_TFBS_HSA
2L	9487588	2L_9487588_SNP [dm3] 2L_9487588_SNP [dm6]	A	G	4.828e^-4	0.924	INTERGENIC
2L	8361441	2L_8361441_SNP [dm3] 2L_8361441_SNP [dm6]	T	C	4.832e^-4	0.924	INTRON CG7627	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2R	13242903	2R_13242903_SNP [dm3] 2R_17355398_SNP [dm6]	G	A	4.833e^-4	0.924	INTRON mbl
3L	1406188	3L_1406188_SNP [dm3] 3L_1406188_SNP [dm6]	C	G	4.843e^-4	0.924	INTRON Ptp61F	TF binding site mE1_TFBS_cad
3R	15370479	3R_15370479_INS [dm3] 3R_19544757_INS [dm6]	T	TT	4.844e^-4	0.924	INTRON Dys
X	19964296	X_19964296_SNP [dm3] X_20070263_SNP [dm6]	C	T	4.845e^-4	0.924	INTERGENIC
3L	441963	3L_441963_SNP [dm3] 3L_441963_SNP [dm6]	C	T	4.849e^-4	0.924	UPSTREAM klar DOWNSTREAM klar INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
X	14153995	X_14153995_SNP [dm3] X_14259962_SNP [dm6]	G	T	4.856e^-4	0.924	INTERGENIC
2R	3971786	2R_3971786_SNP [dm3] 2R_8084281_SNP [dm6]	A	G	4.861e^-4	0.924	UPSTREAM slv INTRON sut1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1982802	3L_1982802_SNP [dm3] 3L_1982802_SNP [dm6]	G	A	4.865e^-4	0.924	INTERGENIC
X	14154318	X_14154318_SNP [dm3] X_14260285_SNP [dm6]	T	G	4.875e^-4	0.924	UPSTREAM CG1461 INTERGENIC
2R	11251011	2R_11251011_SNP [dm3] 2R_15363506_SNP [dm6]	C	T	4.878e^-4	0.924	INTRON unc-5
3L	1347941	3L_1347941_SNP [dm3] 3L_1347941_SNP [dm6]	T	G	4.884e^-4	0.924	INTRON Ptp61F	TF binding site BDTNP1_TFBS_prd
X	16442154	X_16442154_SNP [dm3] X_16548121_SNP [dm6]	A	C	4.887e^-4	0.924	UPSTREAM CG9902 DOWNSTREAM Arp2 INTERGENIC	transposable element FlyBase
2R	9136898	2R_9136898_SNP [dm3] 2R_13249393_SNP [dm6]	G	A	4.895e^-4	0.924	SPLICE_SITE_REGION CG4712 DOWNSTREAM Mp20 INTRON CG4712
2R	17678455	2R_17678455_SNP [dm3] 2R_21790950_SNP [dm6]	T	G	4.896e^-4	0.924	NON_SYNONYMOUS_CODING lox2
X	4091094	X_4091094_DEL [dm3] X_4197061_DEL [dm6]	AAA	A	4.898e^-4	0.924	INTRON Fas2
3L	15065314	3L_15065314_SNP [dm3] 3L_15072214_SNP [dm6]	T	C	4.898e^-4	0.924	UPSTREAM cp309 INTRON cp309	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
X	15462886	X_15462886_SNP [dm3] X_15568853_SNP [dm6]	A	G	4.899e^-4	0.924	UPSTREAM CG7860 INTERGENIC
3L	2611071	3L_2611071_SNP [dm3] 3L_2611071_SNP [dm6]	G	T	4.902e^-4	0.924	SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14385307	3L_14385307_SNP [dm3] 3L_14392207_SNP [dm6]	A	G	4.904e^-4	0.924	INTERGENIC
2L	4512873	2L_4512873_SNP [dm3] 2L_4512873_SNP [dm6]	C	T	4.920e^-4	0.924	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	19140618	X_19140618_SNP [dm3] X_19246585_SNP [dm6]	C	T	4.928e^-4	0.924	INTRON CG7992	TF binding site BDTNP1_TFBS_da
2L	13863269	2L_13863269_SNP [dm3] 2L_13863269_SNP [dm6]	G	C	4.936e^-4	0.924	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	16792402	3L_16792402_SNP [dm3] 3L_16799302_SNP [dm6]	G	A	4.940e^-4	0.924	INTRON CG9674	TF binding site BDTNP1_TFBS_dl
2L	17385513	2L_17385513_SNP [dm3] 2L_17385513_SNP [dm6]	C	A	4.942e^-4	0.924	UPSTREAM CLIP-190 INTRON CLIP-190	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Ubx
2L	14749082	2L_14749082_SNP [dm3] 2L_14749082_SNP [dm6]	C	A	4.942e^-4	0.924	INTERGENIC
2L	14749084	2L_14749084_SNP [dm3] 2L_14749084_SNP [dm6]	T	C	4.942e^-4	0.924	INTERGENIC
2L	18400590	2L_18400590_SNP [dm3] 2L_18400590_SNP [dm6]	T	C	4.948e^-4	0.924	EXON CR44486
3R	21990777	3R_21990777_SNP [dm3] 3R_26165055_SNP [dm6]	C	T	4.950e^-4	0.924	INTERGENIC
2R	10657893	2R_10657893_SNP [dm3] 2R_14770388_SNP [dm6]	C	G	4.960e^-4	0.924	UTR_5_PRIME CG42254 UPSTREAM Spred & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3L	5979576	3L_5979576_INS [dm3] 3L_5986476_INS [dm6]	C	CG	4.966e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	7025296	2L_7025296_SNP [dm3] 2L_7025296_SNP [dm6]	C	A	4.980e^-4	0.924	NON_SYNONYMOUS_CODING CG31908	TF binding site mE1_TFBS_cad
2R	17934212	2R_17934212_SNP [dm3] 2R_22046707_SNP [dm6]	A	G	4.989e^-4	0.924	INTERGENIC
2R	9131363	2R_9131363_SNP [dm3] 2R_13243858_SNP [dm6]	T	C	4.991e^-4	0.924	DOWNSTREAM CR45278 INTERGENIC
3R	21476285	3R_21476285_INS [dm3] 3R_25650563_INS [dm6]	C	CATAGTATGC	4.994e^-4	0.924	UPSTREAM mir-92b DOWNSTREAM jigr1 INTERGENIC	TF binding site mE1_TFBS_cad
3R	1531569	3R_1531569_SNP [dm3] 3R_5705847_SNP [dm6]	C	T	4.999e^-4	0.924	UPSTREAM plx INTRON plx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	781279	3L_781279_SNP [dm3] 3L_781279_SNP [dm6]	G	A	5.000e^-4	0.924	INTERGENIC
2L	7000929	2L_7000929_SNP [dm3] 2L_7000929_SNP [dm6]	T	A	5.002e^-4	0.924	INTRON uif
2R	19314884	2R_19314884_SNP [dm3] 2R_23427361_SNP [dm6]	C	T	5.003e^-4	0.924	INTRON CG9815	TF binding site BDTNP1_TFBS_dl
2L	8740651	2L_8740651_SNP [dm3] 2L_8740651_SNP [dm6]	T	A	5.003e^-4	0.924	UTR_5_PRIME raw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2L	14877395	2L_14877395_SNP [dm3] 2L_14877395_SNP [dm6]	G	A	5.004e^-4	0.924	DOWNSTREAM CR45727 INTERGENIC
2L	9501642	2L_9501642_SNP [dm3] 2L_9501642_SNP [dm6]	G	C	5.007e^-4	0.924	INTRON CG33298
X	19242926	X_19242926_SNP [dm3] X_19348893_SNP [dm6]	C	T	5.016e^-4	0.924	UPSTREAM nAChRalpha7 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	3290070	2L_3290070_SNP [dm3] 2L_3290070_SNP [dm6]	T	G	5.017e^-4	0.924	INTERGENIC
3R	12745588	3R_12745588_SNP [dm3] 3R_16919866_SNP [dm6]	A	G	5.020e^-4	0.924	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	12816038	3L_12816038_SNP [dm3] 3L_12822938_SNP [dm6]	C	A	5.028e^-4	0.924	INTRON CG42588
2L	1647632	2L_1647632_SNP [dm3] 2L_1647632_SNP [dm6]	A	T	5.043e^-4	0.924	UPSTREAM CR45695 INTERGENIC
2L	19715501	2L_19715501_SNP [dm3] 2L_19715501_SNP [dm6]	C	T	5.045e^-4	0.924	INTRON Lar	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad

By genomic position
Variant impact
Gene name

Wing_Intervein_Area7 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results