DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.658e^-2)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.01361
In_3R_Mo	0.05263

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	7.7819	0.0204
In_3R_Mo	4.8408	0.0889

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1974 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	10756244	3L_10756244_SNP [dm3] 3L_10763144_SNP [dm6]	A	G	8.231e^-7	0.867	INTERGENIC
3R	20489343	3R_20489343_SNP [dm3] 3R_24663621_SNP [dm6]	G	A	1.208e^-6	0.867	INTRON slo	regulatory region REDfly_CRMs
3L	413912	3L_413912_SNP [dm3] 3L_413912_SNP [dm6]	C	T	2.157e^-6	0.867	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	413923	3L_413923_SNP [dm3] 3L_413923_SNP [dm6]	A	G	2.787e^-6	0.867	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	4.498e^-6	0.867	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
3L	5461675	3L_5461675_SNP [dm3] 3L_5468575_SNP [dm6]	G	C	5.174e^-6	0.867	INTERGENIC
X	3172280	X_3172280_SNP [dm3] X_3278247_SNP [dm6]	T	G	5.755e^-6	0.867	INTRON dnc
3R	20300904	3R_20300904_SNP [dm3] 3R_24475182_SNP [dm6]	T	G	8.622e^-6	0.867	INTERGENIC
X	5289897	X_5289897_SNP [dm3] X_5395864_SNP [dm6]	A	T	8.755e^-6	0.867	INTRON SK
3L	20888236	3L_20888236_SNP [dm3] 3L_20895136_SNP [dm6]	A	G	9.476e^-6	0.867	INTERGENIC
2L	9463855	2L_9463855_SNP [dm3] 2L_9463855_SNP [dm6]	C	T	1.014e^-5	0.867	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_kn
2L	718007	2L_718007_INS [dm3] 2L_718007_INS [dm6]	T	TT	1.123e^-5	0.867	INTERGENIC
2L	13325482	2L_13325482_SNP [dm3] 2L_13325482_SNP [dm6]	C	A	1.132e^-5	0.867	INTRON CG43778
X	14167285	X_14167285_SNP [dm3] X_14273252_SNP [dm6]	G	A	1.132e^-5	0.867	INTRON na
2L	22310213	2L_22310213_SNP [dm3] 2L_22310213_SNP [dm6]	A	T	1.183e^-5	0.867	INTRON CG17018	transposable element FlyBase
3L	14817116	3L_14817116_SNP [dm3] 3L_14824016_SNP [dm6]	A	T	1.265e^-5	0.867	INTRON CG17839
3R	10122626	3R_10122626_SNP [dm3] 3R_14296904_SNP [dm6]	G	A	1.347e^-5	0.867	INTRON CG12207
3R	10122629	3R_10122629_SNP [dm3] 3R_14296907_SNP [dm6]	T	C	1.347e^-5	0.867	INTRON CG12207
2R	19703974	2R_19703974_SNP [dm3] 2R_23816451_SNP [dm6]	G	T	1.349e^-5	0.867	INTRON CG4797
2L	13605161	2L_13605161_SNP [dm3] 2L_13605161_SNP [dm6]	T	A	1.423e^-5	0.867	INTRON kuz
X	9499586	X_9499586_SNP [dm3] X_9605553_SNP [dm6]	T	C	1.467e^-5	0.867	SYNONYMOUS_CODING Lst8 DOWNSTREAM Aats-lys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	10689502	3R_10689502_SNP [dm3] 3R_14863780_SNP [dm6]	A	G	1.703e^-5	0.867	INTRON btsz
3R	7273988	3R_7273988_SNP [dm3] 3R_11448266_SNP [dm6]	C	T	1.727e^-5	0.867	UTR_5_PRIME sals INTRON CG17230 & 1 other
3L	14811233	3L_14811233_SNP [dm3] 3L_14818133_SNP [dm6]	C	T	1.734e^-5	0.867	INTRON CG17839
2L	6851127	2L_6851127_SNP [dm3] 2L_6851127_SNP [dm6]	C	A	1.881e^-5	0.867	INTERGENIC
2L	13399308	2L_13399308_SNP [dm3] 2L_13399308_SNP [dm6]	T	C	1.978e^-5	0.867	NON_SYNONYMOUS_CODING CG7110 UPSTREAM CG10859 EXON CR44600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3R	10122627	3R_10122627_SNP [dm3] 3R_14296905_SNP [dm6]	A	T	1.985e^-5	0.867	INTRON CG12207
X	10719310	X_10719310_DEL [dm3] X_10825277_DEL [dm6]	AA	A	2.027e^-5	0.867	DOWNSTREAM CR45624 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19156440	2L_19156440_SNP [dm3] 2L_19156440_SNP [dm6]	T	C	2.052e^-5	0.867	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	9500123	X_9500123_SNP [dm3] X_9606090_SNP [dm6]	C	T	2.072e^-5	0.867	UPSTREAM Lst8 DOWNSTREAM Aats-lys INTERGENIC
3R	21673753	3R_21673753_SNP [dm3] 3R_25848031_SNP [dm6]	T	G	2.133e^-5	0.867	UPSTREAM CR45657 & 1 other DOWNSTREAM CR45655 INTERGENIC
X	5291698	X_5291698_SNP [dm3] X_5397665_SNP [dm6]	T	A	2.153e^-5	0.867	DOWNSTREAM SK INTRON SK
2R	15906348	2R_15906348_SNP [dm3] 2R_20018843_SNP [dm6]	G	A	2.224e^-5	0.867	INTERGENIC
3R	23587733	3R_23587733_SNP [dm3] 3R_27762011_SNP [dm6]	A	G	2.508e^-5	0.867	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	21946768	X_21946768_SNP [dm3] X_22544932_SNP [dm6]	T	C	2.522e^-5	0.867	UPSTREAM CG17599 INTERGENIC
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	2.613e^-5	0.867	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1604286	3L_1604286_SNP [dm3] 3L_1604286_SNP [dm6]	A	T	2.625e^-5	0.867	NON_SYNONYMOUS_CODING CG18170 UTR_5_PRIME CG33791 UPSTREAM CG33791
3L	5461676	3L_5461676_SNP [dm3] 3L_5468576_SNP [dm6]	A	C	2.762e^-5	0.867	INTERGENIC
X	9499442	X_9499442_SNP [dm3] X_9605409_SNP [dm6]	C	T	2.815e^-5	0.867	SYNONYMOUS_CODING Lst8 DOWNSTREAM Aats-lys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	14288446	3R_14288446_SNP [dm3] 3R_18462724_SNP [dm6]	C	T	2.931e^-5	0.867	INTRON fru
3L	18267088	3L_18267088_INS [dm3] 3L_18273988_INS [dm6]	T	TT	2.943e^-5	0.867	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	19522673	2R_19522673_SNP [dm3] 2R_23635150_SNP [dm6]	G	T	2.990e^-5	0.867	INTRON retn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	14813948	3L_14813948_SNP [dm3] 3L_14820848_SNP [dm6]	G	A	3.031e^-5	0.867	INTRON CG17839
2R	14796431	2R_14796431_SNP [dm3] 2R_18908926_SNP [dm6]	A	C	3.160e^-5	0.867	DOWNSTREAM Vha100-3 INTRON sano
3R	5895134	3R_5895134_SNP [dm3] 3R_10069412_SNP [dm6]	C	A	3.175e^-5	0.867	DOWNSTREAM CG33784 INTERGENIC
3L	14815037	3L_14815037_SNP [dm3] 3L_14821937_SNP [dm6]	A	C	3.177e^-5	0.867	INTRON CG17839
3L	4857046	3L_4857046_SNP [dm3] 3L_4857046_SNP [dm6]	G	A	3.281e^-5	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	702597	2L_702597_INS [dm3] 2L_702597_INS [dm6]	C	CACCTAAGCACAAATATGC...	3.290e^-5	0.867	INTRON ds	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	14817336	3L_14817336_SNP [dm3] 3L_14824236_SNP [dm6]	G	A	3.338e^-5	0.867	INTRON CG17839
2L	10940636	2L_10940636_SNP [dm3] 2L_10940636_SNP [dm6]	C	G	3.382e^-5	0.867	INTRON dpr2
X	5290172	X_5290172_SNP [dm3] X_5396139_SNP [dm6]	G	A	3.411e^-5	0.867	INTRON SK
3L	20875371	3L_20875371_SNP [dm3] 3L_20882271_SNP [dm6]	C	A	3.451e^-5	0.867	INTRON CG32432
2R	18259203	2R_18259203_SNP [dm3] 2R_22371698_SNP [dm6]	A	C	3.457e^-5	0.867	INTRON Liprin-gamma
2L	702629	2L_702629_SNP [dm3] 2L_702629_SNP [dm6]	C	A	3.559e^-5	0.867	INTRON ds	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	13204342	X_13204342_SNP [dm3] X_13310309_SNP [dm6]	C	G	3.619e^-5	0.867	INTRON IP3K2
X	14170491	X_14170491_SNP [dm3] X_14276458_SNP [dm6]	A	C	3.648e^-5	0.867	NON_SYNONYMOUS_CODING na	TF binding site mE1_TFBS_cad
3R	7278969	3R_7278969_SNP [dm3] 3R_11453247_SNP [dm6]	A	G	3.657e^-5	0.867	SYNONYMOUS_CODING PGRP-LB INTRON CG17230	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	712423	3L_712423_SNP [dm3] 3L_712423_SNP [dm6]	G	C	3.668e^-5	0.867	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	7278942	3R_7278942_SNP [dm3] 3R_11453220_SNP [dm6]	A	G	3.723e^-5	0.867	SYNONYMOUS_CODING PGRP-LB INTRON CG17230	TF binding site mE1_TFBS_chinmo
3L	9990656	3L_9990656_SNP [dm3] 3L_9997556_SNP [dm6]	A	G	3.753e^-5	0.867	INTRON dpr6
3L	14817946	3L_14817946_SNP [dm3] 3L_14824846_SNP [dm6]	A	G	3.787e^-5	0.867	INTRON CG17839
3R	22435414	3R_22435414_SNP [dm3] 3R_26609692_SNP [dm6]	G	T	3.881e^-5	0.867	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25576930	3R_25576930_SNP [dm3] 3R_29751208_SNP [dm6]	T	C	3.898e^-5	0.867	SYNONYMOUS_CODING yata	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15897808	2R_15897808_SNP [dm3] 2R_20010303_SNP [dm6]	G	C	3.931e^-5	0.867	INTERGENIC
2R	16543557	2R_16543557_SNP [dm3] 2R_20656052_SNP [dm6]	G	A	3.942e^-5	0.867	UPSTREAM CG16799 INTRON Lrt & 1 other
3R	10122680	3R_10122680_SNP [dm3] 3R_14296958_SNP [dm6]	T	A	3.975e^-5	0.867	INTRON CG12207
2R	9689880	2R_9689880_SNP [dm3] 2R_13802375_SNP [dm6]	C	A	4.082e^-5	0.867	INTRON Cpr50Cb
3L	413373	3L_413373_SNP [dm3] 3L_413373_SNP [dm6]	G	A	4.150e^-5	0.867	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	9689881	2R_9689881_SNP [dm3] 2R_13802376_SNP [dm6]	T	A	4.186e^-5	0.867	INTRON Cpr50Cb
3L	14389469	3L_14389469_SNP [dm3] 3L_14396369_SNP [dm6]	C	G	4.194e^-5	0.867	INTERGENIC
2L	6520956	2L_6520956_SNP [dm3] 2L_6520956_SNP [dm6]	T	C	4.228e^-5	0.867	INTRON CG31637
2L	9577163	2L_9577163_DEL [dm3] 2L_9577163_DEL [dm6]	ACAA	G	4.234e^-5	0.867	UPSTREAM Mtpalpha DOWNSTREAM CG31709 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
2L	10940439	2L_10940439_SNP [dm3] 2L_10940439_SNP [dm6]	G	A	4.297e^-5	0.867	INTRON dpr2
3L	712399	3L_712399_SNP [dm3] 3L_712399_SNP [dm6]	A	T	4.318e^-5	0.867	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	16685557	X_16685557_SNP [dm3] X_16791524_SNP [dm6]	T	A	4.357e^-5	0.867	UPSTREAM CG4768 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9576858	2L_9576858_SNP [dm3] 2L_9576858_SNP [dm6]	T	G	4.367e^-5	0.867	UPSTREAM Mtpalpha INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	837662	3L_837662_SNP [dm3] 3L_837662_SNP [dm6]	A	C	4.402e^-5	0.867	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	6520957	2L_6520957_DEL [dm3] 2L_6520957_DEL [dm6]	TT	T	4.435e^-5	0.867	INTRON CG31637
3L	14834277	3L_14834277_SNP [dm3] 3L_14841177_SNP [dm6]	T	A	4.438e^-5	0.867	INTRON CG17839
2L	702432	2L_702432_SNP [dm3] 2L_702432_SNP [dm6]	C	A	4.438e^-5	0.867	INTRON ds	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
X	6736540	X_6736540_SNP [dm3] X_6842507_SNP [dm6]	C	T	4.449e^-5	0.867	INTRON CG14435	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6851126	2L_6851126_SNP [dm3] 2L_6851126_SNP [dm6]	G	T	4.473e^-5	0.867	INTERGENIC
2R	16543558	2R_16543558_SNP [dm3] 2R_20656053_SNP [dm6]	T	C	4.576e^-5	0.867	UPSTREAM CG16799 INTRON Lrt & 1 other
2R	16794266	2R_16794266_SNP [dm3] 2R_20906761_SNP [dm6]	C	G	4.578e^-5	0.867	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
2R	16794363	2R_16794363_SNP [dm3] 2R_20906858_SNP [dm6]	T	A	4.578e^-5	0.867	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
2R	16794370	2R_16794370_SNP [dm3] 2R_20906865_SNP [dm6]	C	T	4.578e^-5	0.867	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
2R	16794579	2R_16794579_SNP [dm3] 2R_20907074_SNP [dm6]	T	A	4.578e^-5	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	15839140	2R_15839140_SNP [dm3] 2R_19951635_SNP [dm6]	C	T	4.602e^-5	0.867	SYNONYMOUS_CODING CG10822
X	5594395	X_5594395_SNP [dm3] X_5700362_SNP [dm6]	G	T	4.668e^-5	0.867	INTRON CG4096
3L	837739	3L_837739_INS [dm3] 3L_837739_INS [dm6]	T	TA	4.672e^-5	0.867	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2R	16794328	2R_16794328_SNP [dm3] 2R_20906823_SNP [dm6]	G	A	4.692e^-5	0.867	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
2R	16794339	2R_16794339_SNP [dm3] 2R_20906834_SNP [dm6]	T	A	4.692e^-5	0.867	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
3R	5895763	3R_5895763_SNP [dm3] 3R_10070041_SNP [dm6]	C	A	4.743e^-5	0.867	INTERGENIC
2L	19143020	2L_19143020_SNP [dm3] 2L_19143020_SNP [dm6]	G	T	4.846e^-5	0.867	INTRON brat	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	20901821	3L_20901821_SNP [dm3] 3L_20908721_SNP [dm6]	T	C	4.888e^-5	0.867	INTERGENIC
2R	20161899	2R_20161899_SNP [dm3] 2R_24274376_SNP [dm6]	G	A	4.927e^-5	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	6520952	2L_6520952_SNP [dm3] 2L_6520952_SNP [dm6]	A	G	4.947e^-5	0.867	INTRON CG31637
3L	12571201	3L_12571201_DEL [dm3] 3L_12578101_DEL [dm6]	AGAAATATTAGGAATAGGCT...	A	5.011e^-5	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15838613	2R_15838613_SNP [dm3] 2R_19951108_SNP [dm6]	G	A	5.033e^-5	0.867	UPSTREAM CG10822 INTERGENIC
X	15425490	X_15425490_SNP [dm3] X_15531457_SNP [dm6]	T	A	5.049e^-5	0.867	INTRON Ac13E	TF binding site BDTNP1_TFBS_twi
3L	12571356	3L_12571356_SNP [dm3] 3L_12578256_SNP [dm6]	C	T	5.053e^-5	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	21906167	2L_21906167_SNP [dm3] 2L_21906167_SNP [dm6]	A	T	5.148e^-5	0.867	UPSTREAM CG1428 INTERGENIC
3L	4393832	3L_4393832_SNP [dm3] 3L_4393832_SNP [dm6]	C	T	5.158e^-5	0.867	INTRON slow
3L	14932355	3L_14932355_SNP [dm3] 3L_14939255_SNP [dm6]	C	A	5.201e^-5	0.867	INTRON DCX-EMAP
2L	19733007	2L_19733007_SNP [dm3] 2L_19733007_SNP [dm6]	C	A	5.206e^-5	0.867	SYNONYMOUS_CODING CG10462 DOWNSTREAM Lar
3L	14565106	3L_14565106_DEL [dm3] 3L_14572006_DEL [dm6]	TT	T	5.223e^-5	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14555445	3L_14555445_SNP [dm3] 3L_14562345_SNP [dm6]	A	T	5.226e^-5	0.867	INTRON CG34039	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
3L	14834278	3L_14834278_SNP [dm3] 3L_14841178_SNP [dm6]	G	T	5.319e^-5	0.867	INTRON CG17839
3R	11710859	3R_11710859_SNP [dm3] 3R_15885137_SNP [dm6]	A	T	5.350e^-5	0.867	INTERGENIC
3R	12504233	3R_12504233_SNP [dm3] 3R_16678511_SNP [dm6]	A	G	5.351e^-5	0.867	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	21947679	X_21947679_SNP [dm3] X_22545843_SNP [dm6]	A	T	5.364e^-5	0.867	INTERGENIC
2L	22310214	2L_22310214_SNP [dm3] 2L_22310214_SNP [dm6]	T	G	5.409e^-5	0.867	INTRON CG17018	transposable element FlyBase
2L	5026137	2L_5026137_DEL [dm3] 2L_5026137_DEL [dm6]	TTTGAATAATAATCT...	T	5.599e^-5	0.867	INTRON vkg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	9875563	3L_9875563_SNP [dm3] 3L_9882463_SNP [dm6]	C	T	5.635e^-5	0.867	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
2R	15897827	2R_15897827_SNP [dm3] 2R_20010322_SNP [dm6]	T	C	5.667e^-5	0.867	INTERGENIC
3L	20752645	3L_20752645_SNP [dm3] 3L_20759545_SNP [dm6]	A	G	5.737e^-5	0.867	DOWNSTREAM CG43251 INTERGENIC
2R	18259254	2R_18259254_SNP [dm3] 2R_22371749_SNP [dm6]	G	A	5.796e^-5	0.867	INTRON Liprin-gamma
X	5289896	X_5289896_SNP [dm3] X_5395863_SNP [dm6]	T	A	5.798e^-5	0.867	INTRON SK
3L	14814617	3L_14814617_SNP [dm3] 3L_14821517_SNP [dm6]	C	A	5.840e^-5	0.867	INTRON CG17839
2R	15897818	2R_15897818_SNP [dm3] 2R_20010313_SNP [dm6]	G	T	5.881e^-5	0.867	INTERGENIC
X	12264143	X_12264143_SNP [dm3] X_12370110_SNP [dm6]	C	A	5.912e^-5	0.867	INTERGENIC
3R	5890647	3R_5890647_SNP [dm3] 3R_10064925_SNP [dm6]	G	C	5.920e^-5	0.867	DOWNSTREAM CG33631 INTERGENIC
2R	20691135	2R_20691135_DEL [dm3] 2R_24803612_DEL [dm6]	CC	C	5.922e^-5	0.867	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	2933663	X_2933663_SNP [dm3] X_3039630_SNP [dm6]	C	T	5.953e^-5	0.867	INTRON kirre
X	17441017	X_17441017_SNP [dm3] X_17546984_SNP [dm6]	G	A	6.043e^-5	0.867	INTRON CG43658
3L	10755115	3L_10755115_SNP [dm3] 3L_10762015_SNP [dm6]	C	T	6.118e^-5	0.867	INTERGENIC
X	8680415	X_8680415_SNP [dm3] X_8786382_SNP [dm6]	A	T	6.126e^-5	0.867	INTRON Lim1	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	16005967	X_16005967_SNP [dm3] X_16111934_SNP [dm6]	A	G	6.139e^-5	0.867	INTERGENIC
2R	17618643	2R_17618643_SNP [dm3] 2R_21731138_SNP [dm6]	T	A	6.154e^-5	0.867	INTERGENIC
X	16005985	X_16005985_SNP [dm3] X_16111952_SNP [dm6]	A	G	6.203e^-5	0.867	INTERGENIC
2R	6797806	2R_6797806_SNP [dm3] 2R_10910301_SNP [dm6]	T	C	6.242e^-5	0.867	NON_SYNONYMOUS_CODING Obp47a
3L	4393834	3L_4393834_SNP [dm3] 3L_4393834_SNP [dm6]	C	T	6.252e^-5	0.867	INTRON slow
3L	20901836	3L_20901836_SNP [dm3] 3L_20908736_SNP [dm6]	A	G	6.317e^-5	0.867	INTERGENIC
3L	4393836	3L_4393836_SNP [dm3] 3L_4393836_SNP [dm6]	A	T	6.330e^-5	0.867	INTRON slow
3L	391931	3L_391931_INS [dm3] 3L_391931_INS [dm6]	A	ATTGGATAATTG...	6.351e^-5	0.867	DOWNSTREAM CR45378 INTRON trh
3R	21722120	3R_21722120_SNP [dm3] 3R_25896398_SNP [dm6]	C	T	6.370e^-5	0.867	INTRON CG5948
3R	15213950	3R_15213950_SNP [dm3] 3R_19388228_SNP [dm6]	G	A	6.374e^-5	0.867	DOWNSTREAM CR34285 INTRON Ino80 & 1 other	TF binding site mE1_TFBS_sens
3L	391927	3L_391927_INS [dm3] 3L_391927_INS [dm6]	A	AATTGGAT	6.526e^-5	0.867	DOWNSTREAM CR45378 INTRON trh
2L	3276511	2L_3276511_SNP [dm3] 2L_3276511_SNP [dm6]	A	T	6.602e^-5	0.867	INTRON CG3332	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15839122	2R_15839122_SNP [dm3] 2R_19951617_SNP [dm6]	G	A	6.848e^-5	0.867	SYNONYMOUS_CODING CG10822
X	20156695	X_20156695_SNP [dm3] X_20285668_SNP [dm6]	A	T	6.861e^-5	0.867	INTERGENIC
2L	1235419	2L_1235419_SNP [dm3] 2L_1235419_SNP [dm6]	C	G	6.864e^-5	0.867	INTERGENIC
3L	14809022	3L_14809022_SNP [dm3] 3L_14815922_SNP [dm6]	A	T	6.880e^-5	0.867	INTRON CG17839
3L	14406650	3L_14406650_SNP [dm3] 3L_14413550_SNP [dm6]	A	T	6.888e^-5	0.867	DOWNSTREAM CG3919 INTRON bbg
3R	15967316	3R_15967316_SNP [dm3] 3R_20141594_SNP [dm6]	C	T	6.913e^-5	0.867	INTERGENIC
2L	5550103	2L_5550103_SNP [dm3] 2L_5550103_SNP [dm6]	A	G	6.946e^-5	0.867	SYNONYMOUS_CODING CG14014 DOWNSTREAM Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10940421	2L_10940421_SNP [dm3] 2L_10940421_SNP [dm6]	G	A	6.975e^-5	0.867	INTRON dpr2
2L	5543816	2L_5543816_SNP [dm3] 2L_5543816_SNP [dm6]	C	T	6.978e^-5	0.867	INTRON Lam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	12900268	3L_12900268_SNP [dm3] 3L_12907168_SNP [dm6]	A	G	7.018e^-5	0.867	INTERGENIC
2R	11855618	2R_11855618_SNP [dm3] 2R_15968113_SNP [dm6]	C	G	7.119e^-5	0.867	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
3L	14814340	3L_14814340_SNP [dm3] 3L_14821240_SNP [dm6]	G	C	7.158e^-5	0.867	INTRON CG17839
3R	20489370	3R_20489370_SNP [dm3] 3R_24663648_SNP [dm6]	G	T	7.192e^-5	0.867	INTRON slo	regulatory region REDfly_CRMs
2L	9463889	2L_9463889_DEL [dm3] 2L_9463889_DEL [dm6]	CA	G	7.262e^-5	0.867	UTR_3_PRIME numb DOWNSTREAM numb
X	8156849	X_8156849_SNP [dm3] X_8262816_SNP [dm6]	T	C	7.272e^-5	0.867	INTRON CG1632	TF binding site BDTNP1_TFBS_da
3L	20901759	3L_20901759_SNP [dm3] 3L_20908659_SNP [dm6]	T	C	7.290e^-5	0.867	INTERGENIC
2L	22020494	2L_22020494_SNP [dm3] 2L_22020494_SNP [dm6]	A	G	7.313e^-5	0.867	DOWNSTREAM CR33987 INTRON tio	TF binding site mE1_TFBS_Trl
2L	14339680	2L_14339680_SNP [dm3] 2L_14339680_SNP [dm6]	C	G	7.339e^-5	0.867	NON_SYNONYMOUS_CODING CG15286 INTRON CG33090	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	712388	3L_712388_DEL [dm3] 3L_712388_DEL [dm6]	AAT	A	7.387e^-5	0.867	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712455	3L_712455_SNP [dm3] 3L_712455_SNP [dm6]	C	T	7.439e^-5	0.867	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	413878	3L_413878_DEL [dm3] 3L_413878_DEL [dm6]	CTTTTA	C	7.484e^-5	0.867	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	14402495	3L_14402495_SNP [dm3] 3L_14409395_SNP [dm6]	T	A	7.502e^-5	0.867	UPSTREAM stwl DOWNSTREAM CR45233 INTRON stwl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	5503175	3L_5503175_SNP [dm3] 3L_5510075_SNP [dm6]	G	T	7.512e^-5	0.867	INTRON CG34342
3L	10689860	3L_10689860_SNP [dm3] 3L_10696760_SNP [dm6]	C	T	7.537e^-5	0.867	UTR_5_PRIME NijA
3R	14623513	3R_14623513_SNP [dm3] 3R_18797791_SNP [dm6]	T	C	7.685e^-5	0.879	INTERGENIC
2L	14535386	2L_14535386_SNP [dm3] 2L_14535386_SNP [dm6]	C	T	7.756e^-5	0.881	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9500168	X_9500168_SNP [dm3] X_9606135_SNP [dm6]	T	C	7.807e^-5	0.882	UPSTREAM Lst8 DOWNSTREAM Aats-lys INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	21906150	2L_21906150_DEL [dm3] 2L_21906150_DEL [dm6]	CACCTCTG	C	7.861e^-5	0.882	UPSTREAM CG1428 INTERGENIC
2R	13156683	2R_13156683_SNP [dm3] 2R_17269178_SNP [dm6]	T	C	7.901e^-5	0.882	INTRON mbl	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run
X	5462515	X_5462515_SNP [dm3] X_5568482_SNP [dm6]	C	T	8.016e^-5	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	7337340	2L_7337340_SNP [dm3] 2L_7337340_SNP [dm6]	G	T	8.163e^-5	0.885	INTRON Wnt6
3L	18076992	3L_18076992_SNP [dm3] 3L_18083892_SNP [dm6]	C	T	8.261e^-5	0.885	INTRON CR43253
X	4098959	X_4098959_SNP [dm3] X_4204926_SNP [dm6]	C	T	8.334e^-5	0.885	INTRON Fas2	TF binding site BDTNP1_TFBS_dl
3L	17603716	3L_17603716_SNP [dm3] 3L_17610616_SNP [dm6]	T	G	8.337e^-5	0.885	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl
X	9500136	X_9500136_SNP [dm3] X_9606103_SNP [dm6]	G	A	8.361e^-5	0.885	UPSTREAM Lst8 DOWNSTREAM Aats-lys INTERGENIC
2L	21906159	2L_21906159_DEL [dm3] 2L_21906159_DEL [dm6]	TCGACA	T	8.395e^-5	0.885	UPSTREAM CG1428 INTERGENIC
2L	702609	2L_702609_SNP [dm3] 2L_702609_SNP [dm6]	A	G	8.409e^-5	0.885	INTRON ds	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	8.432e^-5	0.885	INTRON dnc
X	5064424	X_5064424_SNP [dm3] X_5170391_SNP [dm6]	G	A	8.448e^-5	0.885	INTRON rg & 1 other
3R	26486380	3R_26486380_SNP [dm3] 3R_30660658_SNP [dm6]	A	T	8.464e^-5	0.885	INTERGENIC
X	6683309	X_6683309_SNP [dm3] X_6789276_SNP [dm6]	C	A	8.564e^-5	0.885	INTRON C3G
2L	14339679	2L_14339679_SNP [dm3] 2L_14339679_SNP [dm6]	A	G	8.573e^-5	0.885	NON_SYNONYMOUS_CODING CG15286 INTRON CG33090	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	712335	3L_712335_SNP [dm3] 3L_712335_SNP [dm6]	T	A	8.648e^-5	0.885	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	5089234	2L_5089234_SNP [dm3] 2L_5089234_SNP [dm6]	C	G	8.718e^-5	0.885	INTRON pgant5
3L	20821277	3L_20821277_SNP [dm3] 3L_20828177_SNP [dm6]	C	T	8.751e^-5	0.885	UTR_5_PRIME Pka-R1 UPSTREAM Pka-R1 INTRON Pka-R1
2R	17618692	2R_17618692_DEL [dm3] 2R_21731187_DEL [dm6]	AT	A	8.766e^-5	0.885	INTERGENIC
3R	14623556	3R_14623556_SNP [dm3] 3R_18797834_SNP [dm6]	G	A	8.781e^-5	0.885	INTERGENIC
2R	8360568	2R_8360568_SNP [dm3] 2R_12473063_SNP [dm6]	A	G	8.847e^-5	0.885	SYNONYMOUS_CODING CG8550
2R	16289150	2R_16289150_SNP [dm3] 2R_20401645_SNP [dm6]	G	A	8.906e^-5	0.885	INTERGENIC
2R	7045208	2R_7045208_SNP [dm3] 2R_11157703_SNP [dm6]	C	A	8.999e^-5	0.885	INTRON CG13229
X	8368555	X_8368555_SNP [dm3] X_8474522_SNP [dm6]	G	A	9.016e^-5	0.885	SYNONYMOUS_CODING Cp7Fb INTRON CG33223 & 1 other
2L	4578862	2L_4578862_SNP [dm3] 2L_4578862_SNP [dm6]	G	A	9.085e^-5	0.885	UPSTREAM HP6 INTRON dp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21947765	X_21947765_SNP [dm3] X_22545929_SNP [dm6]	C	T	9.103e^-5	0.885	INTERGENIC
2L	10921498	2L_10921498_SNP [dm3] 2L_10921498_SNP [dm6]	C	T	9.107e^-5	0.885	INTRON dpr2
2L	16759323	2L_16759323_SNP [dm3] 2L_16759323_SNP [dm6]	C	T	9.236e^-5	0.889	INTRON ppk17
X	17441018	X_17441018_SNP [dm3] X_17546985_SNP [dm6]	A	G	9.283e^-5	0.889	INTRON CG43658
2R	19533244	2R_19533244_SNP [dm3] 2R_23645721_SNP [dm6]	G	A	9.322e^-5	0.889	UPSTREAM retn INTRON retn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	24831732	3R_24831732_SNP [dm3] 3R_29006010_SNP [dm6]	G	C	9.358e^-5	0.889	INTRON wat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	22297166	2L_22297166_SNP [dm3] 2L_22297166_SNP [dm6]	G	T	9.389e^-5	0.889	INTERGENIC	transposable element FlyBase
2L	18848488	2L_18848488_SNP [dm3] 2L_18848488_SNP [dm6]	A	C	9.666e^-5	0.906	INTRON CG17321
X	14778005	X_14778005_SNP [dm3] X_14883972_SNP [dm6]	A	G	9.793e^-5	0.906	INTRON Flo2
X	3051302	X_3051302_SNP [dm3] X_3157269_SNP [dm6]	G	T	9.802e^-5	0.906	INTRON N
3R	14623430	3R_14623430_SNP [dm3] 3R_18797708_SNP [dm6]	A	G	9.833e^-5	0.906	INTERGENIC
3R	16143535	3R_16143535_SNP [dm3] 3R_20317813_SNP [dm6]	T	A	9.860e^-5	0.906	UPSTREAM CG42668 INTRON CG42668
3L	9252312	3L_9252312_SNP [dm3] 3L_9259212_SNP [dm6]	T	C	1.001e^-4	0.906	INTRON GluRIB	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	21947603	X_21947603_SNP [dm3] X_22545767_SNP [dm6]	A	T	1.004e^-4	0.906	INTERGENIC	transposable element FlyBase
2L	19731717	2L_19731717_DEL [dm3] 2L_19731717_DEL [dm6]	CC	C	1.006e^-4	0.906	UTR_3_PRIME Lar DOWNSTREAM CG10462 & 1 other
2R	17894354	2R_17894354_SNP [dm3] 2R_22006849_SNP [dm6]	A	G	1.015e^-4	0.906	INTRON CG34370
X	4206710	X_4206710_SNP [dm3] X_4312677_SNP [dm6]	A	G	1.016e^-4	0.906	UPSTREAM CG15579 INTRON CR44957
2R	6284161	2R_6284161_SNP [dm3] 2R_10396656_SNP [dm6]	T	G	1.023e^-4	0.906	INTRON CG42732
2L	21896969	2L_21896969_SNP [dm3] 2L_21896969_SNP [dm6]	A	C	1.027e^-4	0.906	SYNONYMOUS_CODING CG11629	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15838896	2R_15838896_SNP [dm3] 2R_19951391_SNP [dm6]	C	T	1.028e^-4	0.906	START_GAINED CG10822 UTR_5_PRIME CG10822
3R	22778961	3R_22778961_SNP [dm3] 3R_26953239_SNP [dm6]	G	A	1.029e^-4	0.906	UTR_5_PRIME CG6330 INTRON CG6330	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	8156894	X_8156894_INS [dm3] X_8262861_INS [dm6]	T	TTCCACGCTCCGAACCAAAT...	1.030e^-4	0.906	INTRON CG1632	TF binding site BDTNP1_TFBS_da
3L	677256	3L_677256_SNP [dm3] 3L_677256_SNP [dm6]	G	T	1.047e^-4	0.906	DOWNSTREAM CG17129 INTERGENIC
3L	411916	3L_411916_SNP [dm3] 3L_411916_SNP [dm6]	A	G	1.053e^-4	0.906	INTERGENIC
3L	712319	3L_712319_INS [dm3] 3L_712319_INS [dm6]	C	CA	1.059e^-4	0.906	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712342	3L_712342_SNP [dm3] 3L_712342_SNP [dm6]	A	T	1.059e^-4	0.906	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	5440366	3R_5440366_SNP [dm3] 3R_9614644_SNP [dm6]	C	A	1.076e^-4	0.906	INTRON CG8312
3L	14827010	3L_14827010_SNP [dm3] 3L_14833910_SNP [dm6]	G	T	1.078e^-4	0.906	INTRON CG17839
X	21948498	X_21948498_SNP [dm3] X_22546662_SNP [dm6]	A	G	1.084e^-4	0.906	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_kn
3L	12088010	3L_12088010_SNP [dm3] 3L_12094910_SNP [dm6]	G	A	1.087e^-4	0.906	INTERGENIC
3R	14388983	3R_14388983_SNP [dm3] 3R_18563261_SNP [dm6]	T	A	1.092e^-4	0.906	INTERGENIC
2L	9577121	2L_9577121_SNP [dm3] 2L_9577121_SNP [dm6]	T	A	1.097e^-4	0.906	UPSTREAM Mtpalpha DOWNSTREAM CG31709 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
X	21950019	X_21950019_SNP [dm3] X_22548183_SNP [dm6]	T	G	1.102e^-4	0.906	DOWNSTREAM CG17601 INTERGENIC
3L	837693	3L_837693_SNP [dm3] 3L_837693_SNP [dm6]	A	C	1.106e^-4	0.906	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	5544154	2L_5544154_SNP [dm3] 2L_5544154_SNP [dm6]	A	C	1.122e^-4	0.906	SYNONYMOUS_CODING Lam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14182626	X_14182626_SNP [dm3] X_14288593_SNP [dm6]	G	A	1.126e^-4	0.906	DOWNSTREAM Muc12Ea INTRON CG9400
X	6489864	X_6489864_SNP [dm3] X_6595831_SNP [dm6]	G	C	1.144e^-4	0.906	UTR_3_PRIME Pat1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14517146	2R_14517146_SNP [dm3] 2R_18629641_SNP [dm6]	G	T	1.152e^-4	0.906	UTR_3_PRIME CG5482 DOWNSTREAM CG5482 & 1 other	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	10915855	3R_10915855_SNP [dm3] 3R_15090133_SNP [dm6]	G	C	1.163e^-4	0.906	INTRON CG6966	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	5550121	2L_5550121_SNP [dm3] 2L_5550121_SNP [dm6]	A	G	1.165e^-4	0.906	SYNONYMOUS_CODING CG14014 DOWNSTREAM Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13907965	2L_13907965_SNP [dm3] 2L_13907965_SNP [dm6]	A	G	1.175e^-4	0.906	SPLICE_SITE_REGION Ance INTRON Ance	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	837721	3L_837721_SNP [dm3] 3L_837721_SNP [dm6]	C	G	1.197e^-4	0.906	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
X	8156863	X_8156863_SNP [dm3] X_8262830_SNP [dm6]	T	C	1.202e^-4	0.906	INTRON CG1632	TF binding site BDTNP1_TFBS_da
2L	3765899	2L_3765899_SNP [dm3] 2L_3765899_SNP [dm6]	T	C	1.204e^-4	0.906	UPSTREAM CG43707 DOWNSTREAM CG43703 INTRON CG43707	TF binding site mE1_TFBS_Trl
3R	14623497	3R_14623497_SNP [dm3] 3R_18797775_SNP [dm6]	A	T	1.207e^-4	0.906	INTERGENIC
X	21376415	X_21376415_SNP [dm3] X_21505388_SNP [dm6]	C	T	1.216e^-4	0.906	INTRON CR45082
2L	5543811	2L_5543811_SNP [dm3] 2L_5543811_SNP [dm6]	T	A	1.221e^-4	0.906	INTRON Lam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10329287	3L_10329287_INS [dm3] 3L_10336187_INS [dm6]	G	GTG	1.240e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna
X	21947178	X_21947178_SNP [dm3] X_22545342_SNP [dm6]	A	T	1.245e^-4	0.906	INTERGENIC	transposable element FlyBase
X	21947722	X_21947722_SNP [dm3] X_22545886_SNP [dm6]	A	G	1.246e^-4	0.906	INTERGENIC	transposable element FlyBase
3L	10688842	3L_10688842_SNP [dm3] 3L_10695742_SNP [dm6]	C	A	1.258e^-4	0.906	INTRON NijA
3L	14828782	3L_14828782_SNP [dm3] 3L_14835682_SNP [dm6]	A	C	1.262e^-4	0.906	INTRON CG17839
3L	10734158	3L_10734158_SNP [dm3] 3L_10741058_SNP [dm6]	T	C	1.266e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8929077	2L_8929077_SNP [dm3] 2L_8929077_SNP [dm6]	A	G	1.268e^-4	0.906	NON_SYNONYMOUS_CODING CG34398	TF binding site mE1_TFBS_cad
3L	20873271	3L_20873271_SNP [dm3] 3L_20880171_SNP [dm6]	C	T	1.271e^-4	0.906	INTRON CG32432
3L	14406794	3L_14406794_SNP [dm3] 3L_14413694_SNP [dm6]	C	G	1.280e^-4	0.906	NON_SYNONYMOUS_CODING bbg DOWNSTREAM CG3919
2L	5548999	2L_5548999_SNP [dm3] 2L_5548999_SNP [dm6]	A	C	1.281e^-4	0.906	UTR_3_PRIME Oscillin DOWNSTREAM CG14014 INTRON Oscillin
2L	696945	2L_696945_SNP [dm3] 2L_696945_SNP [dm6]	C	T	1.283e^-4	0.906	INTRON ds
X	5041862	X_5041862_SNP [dm3] X_5147829_SNP [dm6]	C	T	1.290e^-4	0.906	INTRON rg & 1 other
3R	10440428	3R_10440428_SNP [dm3] 3R_14614706_SNP [dm6]	C	T	1.295e^-4	0.906	INTRON CG14853
3L	434920	3L_434920_SNP [dm3] 3L_434920_SNP [dm6]	C	A	1.298e^-4	0.906	UTR_3_PRIME klar UPSTREAM snmRNA:438	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	4364449	2L_4364449_SNP [dm3] 2L_4364449_SNP [dm6]	T	A	1.301e^-4	0.906	UPSTREAM CR45363 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	2868311	3R_2868311_INS [dm3] 3R_7042589_INS [dm6]	C	CGGA	1.301e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	10689366	3R_10689366_SNP [dm3] 3R_14863644_SNP [dm6]	T	A	1.307e^-4	0.906	INTRON btsz
X	21948890	X_21948890_SNP [dm3] X_22547054_SNP [dm6]	C	G	1.312e^-4	0.906	UPSTREAM CG17601 INTERGENIC
2L	21003601	2L_21003601_SNP [dm3] 2L_21003601_SNP [dm6]	G	A	1.313e^-4	0.906	INTRON CG42238	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2R	14665267	2R_14665267_SNP [dm3] 2R_18777762_SNP [dm6]	C	T	1.314e^-4	0.906	UPSTREAM CG15093 DOWNSTREAM CR43964 INTERGENIC
X	17440937	X_17440937_SNP [dm3] X_17546904_SNP [dm6]	A	C	1.316e^-4	0.906	INTRON CG43658
2L	7886271	2L_7886271_SNP [dm3] 2L_7886271_SNP [dm6]	G	A	1.327e^-4	0.906	UPSTREAM SmE DOWNSTREAM CG34132 INTRON CG7102	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3127602	2L_3127602_SNP [dm3] 2L_3127602_SNP [dm6]	G	A	1.338e^-4	0.906	SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9574777	2L_9574777_SNP [dm3] 2L_9574777_SNP [dm6]	T	A	1.341e^-4	0.906	SYNONYMOUS_CODING Mtpalpha	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7886679	2L_7886679_SNP [dm3] 2L_7886679_SNP [dm6]	A	T	1.342e^-4	0.906	SYNONYMOUS_CODING CG7102 DOWNSTREAM CG34132	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	7356644	2L_7356644_SNP [dm3] 2L_7356644_SNP [dm6]	C	T	1.347e^-4	0.906	INTERGENIC
3R	10689410	3R_10689410_SNP [dm3] 3R_14863688_SNP [dm6]	A	T	1.369e^-4	0.906	INTRON btsz
2R	9887050	2R_9887050_SNP [dm3] 2R_13999545_SNP [dm6]	T	C	1.374e^-4	0.906	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	21950053	X_21950053_SNP [dm3] X_22548217_SNP [dm6]	A	G	1.380e^-4	0.906	DOWNSTREAM CG17601 INTERGENIC
2R	15838900	2R_15838900_SNP [dm3] 2R_19951395_SNP [dm6]	C	T	1.381e^-4	0.906	UTR_5_PRIME CG10822
3R	24693993	3R_24693993_SNP [dm3] 3R_28868271_SNP [dm6]	T	C	1.381e^-4	0.906	SYNONYMOUS_CODING spg	TF binding site mE1_TFBS_chinmo
3L	20901894	3L_20901894_SNP [dm3] 3L_20908794_SNP [dm6]	C	T	1.387e^-4	0.906	INTERGENIC
3L	9302503	3L_9302503_SNP [dm3] 3L_9309403_SNP [dm6]	G	T	1.390e^-4	0.906	INTERGENIC
3L	20901651	3L_20901651_SNP [dm3] 3L_20908551_SNP [dm6]	A	G	1.398e^-4	0.906	INTERGENIC	TF binding site mE1_TFBS_inv
2R	13242811	2R_13242811_SNP [dm3] 2R_17355306_SNP [dm6]	T	A	1.403e^-4	0.906	INTRON mbl
X	21948499	X_21948499_SNP [dm3] X_22546663_SNP [dm6]	C	G	1.406e^-4	0.906	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_kn
X	14167448	X_14167448_SNP [dm3] X_14273415_SNP [dm6]	A	C	1.406e^-4	0.906	INTRON na
3L	677254	3L_677254_SNP [dm3] 3L_677254_SNP [dm6]	T	A	1.418e^-4	0.906	DOWNSTREAM CG17129 INTERGENIC
2R	15838903	2R_15838903_SNP [dm3] 2R_19951398_SNP [dm6]	A	C	1.419e^-4	0.906	UTR_5_PRIME CG10822
2L	10176696	2L_10176696_SNP [dm3] 2L_10176696_SNP [dm6]	G	A	1.422e^-4	0.906	INTRON CG44153
3R	17414791	3R_17414791_INS [dm3] 3R_21589069_INS [dm6]	T	TCA	1.423e^-4	0.906	INTRON InR	TF binding site BDTNP1_TFBS_twi
2L	18376189	2L_18376189_SNP [dm3] 2L_18376189_SNP [dm6]	G	A	1.427e^-4	0.906	INTRON Fas3
3L	14814974	3L_14814974_SNP [dm3] 3L_14821874_SNP [dm6]	A	G	1.431e^-4	0.906	INTRON CG17839
X	14165625	X_14165625_SNP [dm3] X_14271592_SNP [dm6]	C	T	1.442e^-4	0.906	SYNONYMOUS_CODING na	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13139524	3R_13139524_SNP [dm3] 3R_17313802_SNP [dm6]	G	T	1.442e^-4	0.906	INTERGENIC
2R	16306737	2R_16306737_SNP [dm3] 2R_20419232_SNP [dm6]	T	C	1.443e^-4	0.906	INTERGENIC
2R	18013906	2R_18013906_SNP [dm3] 2R_22126401_SNP [dm6]	A	G	1.451e^-4	0.906	SYNONYMOUS_CODING GM130	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	712385	3L_712385_DEL [dm3] 3L_712385_DEL [dm6]	TA	T	1.464e^-4	0.906	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	21906528	2L_21906528_SNP [dm3] 2L_21906528_SNP [dm6]	A	G	1.466e^-4	0.906	NON_SYNONYMOUS_CODING CG1428	TF binding site mE1_TFBS_cad
X	4098987	X_4098987_SNP [dm3] X_4204954_SNP [dm6]	G	C	1.468e^-4	0.906	INTRON Fas2	TF binding site BDTNP1_TFBS_dl
3R	7334913	3R_7334913_SNP [dm3] 3R_11509191_SNP [dm6]	C	T	1.474e^-4	0.906	INTERGENIC
3L	20872513	3L_20872513_SNP [dm3] 3L_20879413_SNP [dm6]	C	G	1.483e^-4	0.906	INTRON CG32432
X	16402532	X_16402532_SNP [dm3] X_16508499_SNP [dm6]	T	C	1.485e^-4	0.906	INTRON para
2L	10322692	2L_10322692_SNP [dm3] 2L_10322692_SNP [dm6]	A	T	1.487e^-4	0.906	UPSTREAM CG5381 & 1 other INTRON CG5381 & 1 other
X	20272464	X_20272464_SNP [dm3] X_20401437_SNP [dm6]	G	C	1.497e^-4	0.906	SYNONYMOUS_CODING HERC2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3968747	2L_3968747_SNP [dm3] 2L_3968747_SNP [dm6]	A	T	1.499e^-4	0.906	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	20266251	X_20266251_SNP [dm3] X_20395224_SNP [dm6]	T	C	1.508e^-4	0.906	SYNONYMOUS_CODING HERC2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	5290203	X_5290203_SNP [dm3] X_5396170_SNP [dm6]	T	C	1.513e^-4	0.906	INTRON SK
X	21948477	X_21948477_INS [dm3] X_22546641_INS [dm6]	A	AATGTTGTAATAATGAAATA...	1.513e^-4	0.906	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_kn
X	3923979	X_3923979_SNP [dm3] X_4029946_SNP [dm6]	A	T	1.518e^-4	0.906	INTERGENIC
2L	9817493	2L_9817493_SNP [dm3] 2L_9817493_SNP [dm6]	C	G	1.521e^-4	0.906	INTRON nAChRalpha6
2L	19146880	2L_19146880_SNP [dm3] 2L_19146880_SNP [dm6]	G	T	1.528e^-4	0.906	INTRON brat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4152861	3L_4152861_SNP [dm3] 3L_4152861_SNP [dm6]	G	A	1.529e^-4	0.906	DOWNSTREAM CG1299 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6498249	X_6498249_SNP [dm3] X_6604216_SNP [dm6]	G	A	1.531e^-4	0.906	INTRON pigs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11724772	2R_11724772_SNP [dm3] 2R_15837267_SNP [dm6]	C	T	1.534e^-4	0.906	INTRON tun	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	7349516	3R_7349516_SNP [dm3] 3R_11523794_SNP [dm6]	C	G	1.540e^-4	0.906	INTERGENIC
2L	6984461	2L_6984461_SNP [dm3] 2L_6984461_SNP [dm6]	C	T	1.541e^-4	0.906	SYNONYMOUS_CODING uif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4206654	X_4206654_SNP [dm3] X_4312621_SNP [dm6]	G	A	1.563e^-4	0.906	UPSTREAM CG15579 INTRON CR44957
3R	7331866	3R_7331866_SNP [dm3] 3R_11506144_SNP [dm6]	C	T	1.564e^-4	0.906	DOWNSTREAM dpr5 INTERGENIC
3L	14812640	3L_14812640_SNP [dm3] 3L_14819540_SNP [dm6]	G	A	1.564e^-4	0.906	INTRON CG17839
2L	3825626	2L_3825626_SNP [dm3] 2L_3825626_SNP [dm6]	A	T	1.565e^-4	0.906	UPSTREAM slp1 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	19769710	3R_19769710_SNP [dm3] 3R_23943988_SNP [dm6]	G	A	1.578e^-4	0.906	SYNONYMOUS_CODING CG12268 UPSTREAM Gdh	TF binding site mE1_TFBS_cad
3R	25155781	3R_25155781_SNP [dm3] 3R_29330059_SNP [dm6]	G	T	1.581e^-4	0.906	INTERGENIC
2R	4269378	2R_4269378_SNP [dm3] 2R_8381873_SNP [dm6]	T	C	1.583e^-4	0.906	INTRON pdm3
2L	22297776	2L_22297776_SNP [dm3] 2L_22297776_SNP [dm6]	G	A	1.594e^-4	0.906	INTERGENIC	transposable element FlyBase
3L	712322	3L_712322_SNP [dm3] 3L_712322_SNP [dm6]	A	G	1.594e^-4	0.906	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	9379106	3R_9379106_SNP [dm3] 3R_13553384_SNP [dm6]	G	C	1.595e^-4	0.906	INTERGENIC
X	13476075	X_13476075_SNP [dm3] X_13582042_SNP [dm6]	C	A	1.596e^-4	0.906	INTRON Tango13
2R	15838910	2R_15838910_SNP [dm3] 2R_19951405_SNP [dm6]	T	A	1.605e^-4	0.906	UTR_5_PRIME CG10822
X	5288656	X_5288656_SNP [dm3] X_5394623_SNP [dm6]	A	G	1.612e^-4	0.906	INTRON SK
3R	17414796	3R_17414796_SNP [dm3] 3R_21589074_SNP [dm6]	A	T	1.616e^-4	0.906	INTRON InR	TF binding site BDTNP1_TFBS_twi
3L	1740510	3L_1740510_SNP [dm3] 3L_1740510_SNP [dm6]	C	A	1.618e^-4	0.906	INTRON Gk
3L	712337	3L_712337_SNP [dm3] 3L_712337_SNP [dm6]	G	T	1.620e^-4	0.906	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	20478993	3R_20478993_SNP [dm3] 3R_24653271_SNP [dm6]	G	T	1.623e^-4	0.906	UTR_3_PRIME ash2 DOWNSTREAM CG31125	TF binding site mE1_TFBS_chinmo
3L	12900270	3L_12900270_SNP [dm3] 3L_12907170_SNP [dm6]	A	G	1.628e^-4	0.906	INTERGENIC
3R	14623642	3R_14623642_SNP [dm3] 3R_18797920_SNP [dm6]	G	A	1.633e^-4	0.906	INTERGENIC
3L	9535552	3L_9535552_SNP [dm3] 3L_9542452_SNP [dm6]	A	G	1.642e^-4	0.906	SYNONYMOUS_CODING Ir67a
3L	9535558	3L_9535558_SNP [dm3] 3L_9542458_SNP [dm6]	A	T	1.642e^-4	0.906	NON_SYNONYMOUS_CODING Ir67a
3R	20506555	3R_20506555_SNP [dm3] 3R_24680833_SNP [dm6]	A	C	1.643e^-4	0.906	INTRON slo
3L	605127	3L_605127_SNP [dm3] 3L_605127_SNP [dm6]	C	T	1.648e^-4	0.906	DOWNSTREAM Reg-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	16052774	X_16052774_SNP [dm3] X_16158741_SNP [dm6]	A	G	1.660e^-4	0.906	INTERGENIC
3L	7561325	3L_7561325_SNP [dm3] 3L_7568225_SNP [dm6]	T	C	1.662e^-4	0.906	SYNONYMOUS_CODING frac
3L	712323	3L_712323_SNP [dm3] 3L_712323_SNP [dm6]	T	A	1.670e^-4	0.906	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	21189414	2L_21189414_SNP [dm3] 2L_21189414_SNP [dm6]	T	G	1.670e^-4	0.906	INTRON Ret
3R	10786018	3R_10786018_SNP [dm3] 3R_14960296_SNP [dm6]	G	A	1.671e^-4	0.906	INTERGENIC
3L	14814972	3L_14814972_SNP [dm3] 3L_14821872_SNP [dm6]	A	T	1.673e^-4	0.906	INTRON CG17839
2R	19519294	2R_19519294_SNP [dm3] 2R_23631771_SNP [dm6]	A	T	1.679e^-4	0.906	UPSTREAM retn INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	20901650	3L_20901650_SNP [dm3] 3L_20908550_SNP [dm6]	A	G	1.691e^-4	0.906	INTERGENIC	TF binding site mE1_TFBS_inv
2L	4389227	2L_4389227_SNP [dm3] 2L_4389227_SNP [dm6]	A	G	1.692e^-4	0.906	INTRON Tps1	TF binding site mE1_TFBS_cad
X	16052807	X_16052807_SNP [dm3] X_16158774_SNP [dm6]	C	T	1.708e^-4	0.906	INTERGENIC
3R	8638979	3R_8638979_SNP [dm3] 3R_12813257_SNP [dm6]	C	G	1.711e^-4	0.906	INTRON CG31345
3R	26912529	3R_26912529_SNP [dm3] 3R_31086807_SNP [dm6]	A	G	1.715e^-4	0.906	INTERGENIC
2L	9571394	2L_9571394_SNP [dm3] 2L_9571394_SNP [dm6]	G	A	1.718e^-4	0.906	UTR_5_PRIME CG3838 INTRON CG3838
3L	18762634	3L_18762634_SNP [dm3] 3L_18769534_SNP [dm6]	T	C	1.722e^-4	0.906	INTRON ftz-f1
2L	9571449	2L_9571449_SNP [dm3] 2L_9571449_SNP [dm6]	G	A	1.734e^-4	0.906	INTRON CG3838
3R	24427748	3R_24427748_SNP [dm3] 3R_28602026_SNP [dm6]	A	T	1.742e^-4	0.906	UPSTREAM snoRNA:Psi28S-3405c & 2 others DOWNSTREAM snoRNA:Psi28S-3405a & 2 others INTRON Hrb98DE
2R	13242775	2R_13242775_SNP [dm3] 2R_17355270_SNP [dm6]	A	C	1.742e^-4	0.906	INTRON mbl
2R	19853493	2R_19853493_SNP [dm3] 2R_23965970_SNP [dm6]	G	A	1.744e^-4	0.906	SYNONYMOUS_CODING Alas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12587620	2R_12587620_SNP [dm3] 2R_16700115_SNP [dm6]	C	T	1.748e^-4	0.906	INTRON CG30463
2L	22297567	2L_22297567_SNP [dm3] 2L_22297567_SNP [dm6]	C	G	1.753e^-4	0.906	INTERGENIC	transposable element FlyBase
3R	26930988	3R_26930988_SNP [dm3] 3R_31105266_SNP [dm6]	T	C	1.754e^-4	0.906	INTERGENIC
3L	20795940	3L_20795940_SNP [dm3] 3L_20802840_SNP [dm6]	A	T	1.762e^-4	0.906	NON_SYNONYMOUS_CODING Spc105R
3L	14356997	3L_14356997_SNP [dm3] 3L_14363897_SNP [dm6]	T	A	1.763e^-4	0.906	INTRON fz
3L	4545925	3L_4545925_SNP [dm3] 3L_4545925_SNP [dm6]	C	A	1.764e^-4	0.906	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	21948706	X_21948706_SNP [dm3] X_22546870_SNP [dm6]	G	A	1.772e^-4	0.906	UPSTREAM CG17601 INTERGENIC
3R	17414799	3R_17414799_SNP [dm3] 3R_21589077_SNP [dm6]	T	C	1.773e^-4	0.906	INTRON InR	TF binding site BDTNP1_TFBS_twi
X	3167358	X_3167358_SNP [dm3] X_3273325_SNP [dm6]	A	G	1.786e^-4	0.906	INTRON dnc
2L	21900063	2L_21900063_SNP [dm3] 2L_21900063_SNP [dm6]	T	A	1.797e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	11576437	2R_11576437_SNP [dm3] 2R_15688932_SNP [dm6]	T	C	1.800e^-4	0.906	NON_SYNONYMOUS_CODING Cep89 UPSTREAM CG30090	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13983167	2L_13983167_SNP [dm3] 2L_13983167_SNP [dm6]	G	A	1.801e^-4	0.906	UTR_3_PRIME NimC2 & 1 other DOWNSTREAM NimC2
2L	8167858	2L_8167858_SNP [dm3] 2L_8167858_SNP [dm6]	G	C	1.809e^-4	0.906	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	539849	2L_539849_SNP [dm3] 2L_539849_SNP [dm6]	C	T	1.826e^-4	0.906	NON_SYNONYMOUS_CODING ush DOWNSTREAM lwr	TF binding site mE1_TFBS_cad
2L	4364464	2L_4364464_SNP [dm3] 2L_4364464_SNP [dm6]	C	G	1.835e^-4	0.906	UPSTREAM CR45363 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18871022	3R_18871022_SNP [dm3] 3R_23045300_SNP [dm6]	C	T	1.851e^-4	0.906	SYNONYMOUS_CODING CG17121 DOWNSTREAM CG13837	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22682213	3R_22682213_SNP [dm3] 3R_26856491_SNP [dm6]	A	T	1.854e^-4	0.906	INTRON Lerp
2R	15839110	2R_15839110_SNP [dm3] 2R_19951605_SNP [dm6]	C	A	1.855e^-4	0.906	SYNONYMOUS_CODING CG10822
3L	10702270	3L_10702270_SNP [dm3] 3L_10709170_SNP [dm6]	C	A	1.858e^-4	0.906	INTERGENIC
3R	20479009	3R_20479009_SNP [dm3] 3R_24653287_SNP [dm6]	A	T	1.863e^-4	0.906	UTR_3_PRIME ash2 DOWNSTREAM CG31125	TF binding site mE1_TFBS_chinmo
X	14167446	X_14167446_SNP [dm3] X_14273413_SNP [dm6]	A	T	1.867e^-4	0.906	INTRON na
2L	7883777	2L_7883777_SNP [dm3] 2L_7883777_SNP [dm6]	A	G	1.870e^-4	0.906	SYNONYMOUS_CODING CG7102
2L	7014162	2L_7014162_SNP [dm3] 2L_7014162_SNP [dm6]	C	T	1.873e^-4	0.906	SYNONYMOUS_CODING CG43322 DOWNSTREAM ade3	TF binding site mE1_TFBS_sens
3L	837843	3L_837843_SNP [dm3] 3L_837843_SNP [dm6]	C	T	1.874e^-4	0.906	UPSTREAM CG13887 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3R	13657502	3R_13657502_SNP [dm3] 3R_17831780_SNP [dm6]	G	A	1.875e^-4	0.906	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	21946743	X_21946743_SNP [dm3] X_22544907_SNP [dm6]	C	A	1.878e^-4	0.906	UPSTREAM CG17599 INTERGENIC
3L	18700284	3L_18700284_SNP [dm3] 3L_18707184_SNP [dm6]	A	C	1.879e^-4	0.906	UPSTREAM CR44674 INTERGENIC
2L	7645055	2L_7645055_SNP [dm3] 2L_7645055_SNP [dm6]	G	C	1.880e^-4	0.906	NON_SYNONYMOUS_CODING Slob UTR_3_PRIME Slob
2L	8777276	2L_8777276_SNP [dm3] 2L_8777276_SNP [dm6]	T	C	1.891e^-4	0.906	DOWNSTREAM CG9468 INTERGENIC
3L	10436873	3L_10436873_SNP [dm3] 3L_10443773_SNP [dm6]	C	T	1.892e^-4	0.906	INTERGENIC
2L	19923610	2L_19923610_INS [dm3] 2L_19923610_INS [dm6]	C	CCAGC	1.892e^-4	0.906	DOWNSTREAM CR43827 INTRON sick
2L	2735393	2L_2735393_SNP [dm3] 2L_2735393_SNP [dm6]	C	A	1.893e^-4	0.906	UPSTREAM CG31689 INTRON CG31689
2R	18835351	2R_18835351_SNP [dm3] 2R_22947828_SNP [dm6]	A	G	1.894e^-4	0.906	INTERGENIC
3L	14818175	3L_14818175_SNP [dm3] 3L_14825075_SNP [dm6]	T	G	1.895e^-4	0.906	INTRON CG17839
3R	9771649	3R_9771649_SNP [dm3] 3R_13945927_SNP [dm6]	T	A	1.905e^-4	0.906	UPSTREAM Art6 INTERGENIC
X	5679475	X_5679475_SNP [dm3] X_5785442_SNP [dm6]	T	A	1.909e^-4	0.906	INTRON CG42699	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20743241	3L_20743241_SNP [dm3] 3L_20750141_SNP [dm6]	A	C	1.917e^-4	0.906	INTERGENIC
3R	9771490	3R_9771490_SNP [dm3] 3R_13945768_SNP [dm6]	G	C	1.924e^-4	0.906	SYNONYMOUS_CODING Art6
X	14169950	X_14169950_SNP [dm3] X_14275917_SNP [dm6]	T	C	1.930e^-4	0.906	SYNONYMOUS_CODING na	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22682225	3R_22682225_SNP [dm3] 3R_26856503_SNP [dm6]	T	C	1.934e^-4	0.906	INTRON Lerp
2L	22122340	2L_22122340_SNP [dm3] 2L_22122340_SNP [dm6]	C	A	1.938e^-4	0.906	SYNONYMOUS_CODING CG3651	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	13953258	2R_13953258_SNP [dm3] 2R_18065753_SNP [dm6]	C	T	1.941e^-4	0.906	INTRON CG34386
2L	2305519	2L_2305519_SNP [dm3] 2L_2305519_SNP [dm6]	A	G	1.944e^-4	0.906	INTERGENIC
2L	1347362	2L_1347362_INS [dm3] 2L_1347362_INS [dm6]	T	TATACAA	1.945e^-4	0.906	INTERGENIC
3R	25026945	3R_25026945_SNP [dm3] 3R_29201223_SNP [dm6]	C	G	1.948e^-4	0.906	SYNONYMOUS_CODING CG11899 DOWNSTREAM Mesh1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10410917	3R_10410917_SNP [dm3] 3R_14585195_SNP [dm6]	A	T	1.949e^-4	0.906	INTRON stumps	TF binding site BDTNP1_TFBS_prd
3L	6837834	3L_6837834_SNP [dm3] 3L_6844734_SNP [dm6]	T	C	1.950e^-4	0.906	INTERGENIC
3L	9498241	3L_9498241_SNP [dm3] 3L_9505141_SNP [dm6]	C	T	1.954e^-4	0.906	UTR_5_PRIME path	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3003271	X_3003271_INS [dm3] X_3109238_INS [dm6]	A	AA	1.955e^-4	0.906	INTRON kirre
3L	9241428	3L_9241428_SNP [dm3] 3L_9248328_SNP [dm6]	C	A	1.955e^-4	0.906	INTERGENIC
2R	13415564	2R_13415564_SNP [dm3] 2R_17528059_SNP [dm6]	G	A	1.956e^-4	0.906	SYNONYMOUS_CODING Patronin
2R	13953250	2R_13953250_SNP [dm3] 2R_18065745_SNP [dm6]	C	T	1.959e^-4	0.906	INTRON CG34386
3L	1604227	3L_1604227_SNP [dm3] 3L_1604227_SNP [dm6]	A	T	1.959e^-4	0.906	NON_SYNONYMOUS_CODING CG18170 UTR_5_PRIME CG33791 UPSTREAM CG33791
3L	1604231	3L_1604231_SNP [dm3] 3L_1604231_SNP [dm6]	G	A	1.959e^-4	0.906	SYNONYMOUS_CODING CG18170 UTR_5_PRIME CG33791 UPSTREAM CG33791
3L	712348	3L_712348_SNP [dm3] 3L_712348_SNP [dm6]	G	T	1.964e^-4	0.906	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	6090501	2L_6090501_SNP [dm3] 2L_6090501_SNP [dm6]	C	T	1.976e^-4	0.906	UPSTREAM Kr-h1 & 1 other INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	10488814	2L_10488814_SNP [dm3] 2L_10488814_SNP [dm6]	A	T	1.977e^-4	0.906	UTR_5_PRIME CG6144 UPSTREAM CG6144 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	24693924	3R_24693924_SNP [dm3] 3R_28868202_SNP [dm6]	C	T	1.983e^-4	0.906	SYNONYMOUS_CODING spg	TF binding site mE1_TFBS_chinmo
3R	14977420	3R_14977420_SNP [dm3] 3R_19151698_SNP [dm6]	C	A	1.985e^-4	0.906	INTRON CG5835
2L	19146962	2L_19146962_SNP [dm3] 2L_19146962_SNP [dm6]	G	A	1.996e^-4	0.906	INTRON brat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20403570	X_20403570_SNP [dm3] X_20532543_SNP [dm6]	G	A	2.007e^-4	0.906	INTERGENIC
X	14171256	X_14171256_SNP [dm3] X_14277223_SNP [dm6]	G	A	2.010e^-4	0.906	UTR_3_PRIME na UPSTREAM Muc12Ea DOWNSTREAM na
3R	13657464	3R_13657464_DEL [dm3] 3R_17831742_DEL [dm6]	TTGATA	T	2.016e^-4	0.906	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	21900017	2L_21900017_SNP [dm3] 2L_21900017_SNP [dm6]	A	C	2.017e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	13952279	2L_13952279_SNP [dm3] 2L_13952279_SNP [dm6]	A	T	2.020e^-4	0.906	INTRON Ance-3
3R	25562945	3R_25562945_SNP [dm3] 3R_29737223_SNP [dm6]	C	T	2.022e^-4	0.906	SYNONYMOUS_CODING CG7598 UPSTREAM CG7601	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Ubx
2R	2939347	2R_2939347_SNP [dm3] 2R_7051842_SNP [dm6]	G	A	2.027e^-4	0.906	UTR_3_PRIME lbm UPSTREAM Tsp42En
3L	712384	3L_712384_SNP [dm3] 3L_712384_SNP [dm6]	T	C	2.027e^-4	0.906	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	10803034	2R_10803034_SNP [dm3] 2R_14915529_SNP [dm6]	A	T	2.030e^-4	0.906	INTRON CG10249
X	17440995	X_17440995_SNP [dm3] X_17546962_SNP [dm6]	A	T	2.034e^-4	0.906	INTRON CG43658
X	12158526	X_12158526_SNP [dm3] X_12264493_SNP [dm6]	C	G	2.037e^-4	0.906	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15917599	2R_15917599_SNP [dm3] 2R_20030094_SNP [dm6]	A	G	2.044e^-4	0.906	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	10921549	2L_10921549_SNP [dm3] 2L_10921549_SNP [dm6]	T	C	2.048e^-4	0.906	INTRON dpr2
2L	20991750	2L_20991750_SNP [dm3] 2L_20991750_SNP [dm6]	A	C	2.051e^-4	0.906	INTRON CG42238
2L	7883268	2L_7883268_SNP [dm3] 2L_7883268_SNP [dm6]	T	G	2.055e^-4	0.906	DOWNSTREAM CG7102 INTERGENIC
2L	10525640	2L_10525640_SNP [dm3] 2L_10525640_SNP [dm6]	T	A	2.062e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21673754	3R_21673754_SNP [dm3] 3R_25848032_SNP [dm6]	T	G	2.062e^-4	0.906	UPSTREAM CR45657 & 1 other DOWNSTREAM CR45655 INTERGENIC
2L	18813039	2L_18813039_SNP [dm3] 2L_18813039_SNP [dm6]	T	A	2.064e^-4	0.906	UTR_5_PRIME CG42305 & 1 other
2R	6797789	2R_6797789_SNP [dm3] 2R_10910284_SNP [dm6]	C	A	2.072e^-4	0.906	NON_SYNONYMOUS_CODING Obp47a
2L	6090249	2L_6090249_INS [dm3] 2L_6090249_INS [dm6]	T	TAAGTATAAATT...	2.074e^-4	0.906	INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3R	15098337	3R_15098337_SNP [dm3] 3R_19272615_SNP [dm6]	A	C	2.083e^-4	0.906	INTERGENIC
X	16687145	X_16687145_SNP [dm3] X_16793112_SNP [dm6]	T	A	2.084e^-4	0.906	INTRON CG4768	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3L	393293	3L_393293_SNP [dm3] 3L_393293_SNP [dm6]	A	T	2.094e^-4	0.906	UPSTREAM CR43969 & 2 others INTERGENIC	TF binding site mE1_TFBS_Trl
X	12158577	X_12158577_SNP [dm3] X_12264544_SNP [dm6]	A	G	2.105e^-4	0.906	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11922601	3L_11922601_SNP [dm3] 3L_11929501_SNP [dm6]	A	C	2.108e^-4	0.906	INTRON CG44837 & 1 other
2L	7343130	2L_7343130_SNP [dm3] 2L_7343130_SNP [dm6]	G	T	2.109e^-4	0.906	INTRON Wnt6
3L	1604192	3L_1604192_SNP [dm3] 3L_1604192_SNP [dm6]	C	A	2.118e^-4	0.906	NON_SYNONYMOUS_CODING CG18170 UTR_5_PRIME CG33791 UPSTREAM CG33791
3R	14388987	3R_14388987_SNP [dm3] 3R_18563265_SNP [dm6]	C	T	2.123e^-4	0.906	DOWNSTREAM CG43210 & 1 other INTERGENIC
3R	26671686	3R_26671686_SNP [dm3] 3R_30845964_SNP [dm6]	T	A	2.127e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	18259260	2R_18259260_SNP [dm3] 2R_22371755_SNP [dm6]	T	C	2.131e^-4	0.906	INTRON Liprin-gamma
3L	332002	3L_332002_SNP [dm3] 3L_332002_SNP [dm6]	T	A	2.135e^-4	0.906	UTR_5_PRIME mthl9 DOWNSTREAM mthl10 INTRON Ptpmeg	TF binding site mE1_TFBS_Trl
3L	396393	3L_396393_SNP [dm3] 3L_396393_SNP [dm6]	T	C	2.137e^-4	0.906	INTERGENIC
3L	12025607	3L_12025607_SNP [dm3] 3L_12032507_SNP [dm6]	T	C	2.143e^-4	0.906	UPSTREAM CG43993 INTRON rols
2L	18848396	2L_18848396_SNP [dm3] 2L_18848396_SNP [dm6]	T	A	2.145e^-4	0.906	INTRON CG17321
3R	15895202	3R_15895202_SNP [dm3] 3R_20069480_SNP [dm6]	A	T	2.155e^-4	0.906	INTERGENIC
2R	15842784	2R_15842784_SNP [dm3] 2R_19955279_SNP [dm6]	C	T	2.157e^-4	0.906	UPSTREAM CG44623 DOWNSTREAM CG44622 INTERGENIC
2R	5824862	2R_5824862_SNP [dm3] 2R_9937357_SNP [dm6]	C	A	2.160e^-4	0.906	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6101662	2L_6101662_SNP [dm3] 2L_6101662_SNP [dm6]	C	A	2.166e^-4	0.906	INTRON stai
2R	17920188	2R_17920188_DEL [dm3] 2R_22032683_DEL [dm6]	GGGCTGG	G	2.167e^-4	0.906	INTRON CG34370
2R	18259224	2R_18259224_SNP [dm3] 2R_22371719_SNP [dm6]	C	G	2.167e^-4	0.906	INTRON Liprin-gamma
3L	7151754	3L_7151754_SNP [dm3] 3L_7158654_SNP [dm6]	G	A	2.169e^-4	0.906	SYNONYMOUS_CODING CG8620 UTR_3_PRIME CG8620 DOWNSTREAM Dscam2
2L	5548115	2L_5548115_SNP [dm3] 2L_5548115_SNP [dm6]	C	T	2.170e^-4	0.906	INTRON Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	16794234	2R_16794234_SNP [dm3] 2R_20906729_SNP [dm6]	G	A	2.174e^-4	0.906	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
3R	25212391	3R_25212391_SNP [dm3] 3R_29386669_SNP [dm6]	C	T	2.175e^-4	0.906	INTRON Ptp99A	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
3L	10842862	3L_10842862_SNP [dm3] 3L_10849762_SNP [dm6]	T	C	2.182e^-4	0.906	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	21199429	3L_21199429_SNP [dm3] 3L_21206329_SNP [dm6]	T	C	2.186e^-4	0.906	SYNONYMOUS_CODING CG10512	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18285090	2R_18285090_SNP [dm3] 2R_22397585_SNP [dm6]	T	A	2.193e^-4	0.906	INTRON babos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18639590	X_18639590_SNP [dm3] X_18745557_SNP [dm6]	G	T	2.194e^-4	0.906	DOWNSTREAM CG12609 INTERGENIC	TF binding site mE1_TFBS_inv
2L	13952250	2L_13952250_SNP [dm3] 2L_13952250_SNP [dm6]	C	T	2.218e^-4	0.912	INTRON Ance-3
2R	11724775	2R_11724775_SNP [dm3] 2R_15837270_SNP [dm6]	A	G	2.220e^-4	0.912	INTRON tun	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	718515	3L_718515_SNP [dm3] 3L_718515_SNP [dm6]	A	C	2.224e^-4	0.912	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16442415	3L_16442415_SNP [dm3] 3L_16449315_SNP [dm6]	C	T	2.238e^-4	0.916	INTRON CG33158 & 1 other
X	19098141	X_19098141_SNP [dm3] X_19204108_SNP [dm6]	G	T	2.248e^-4	0.918	SYNONYMOUS_CODING Ulp1
3L	7949087	3L_7949087_SNP [dm3] 3L_7955987_SNP [dm6]	C	A	2.255e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	3747738	2R_3747738_INS [dm3] 2R_7860233_INS [dm6]	G	GAG	2.265e^-4	0.918	INTRON Dgk
3L	20757290	3L_20757290_SNP [dm3] 3L_20764190_SNP [dm6]	T	G	2.273e^-4	0.918	INTERGENIC
3L	11791042	3L_11791042_SNP [dm3] 3L_11797942_SNP [dm6]	A	G	2.274e^-4	0.918	SYNONYMOUS_CODING Klp68D	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11573868	2R_11573868_SNP [dm3] 2R_15686363_SNP [dm6]	C	T	2.276e^-4	0.918	SYNONYMOUS_CODING Ranbp11 UPSTREAM CG30082	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3R	15895240	3R_15895240_DEL [dm3] 3R_20069518_DEL [dm6]	ATA	A	2.278e^-4	0.918	INTERGENIC
2L	851292	2L_851292_DEL [dm3] 2L_851292_DEL [dm6]	AATA	A	2.282e^-4	0.918	UTR_3_PRIME CG4291 UPSTREAM drongo DOWNSTREAM CG4291 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h
3R	5907797	3R_5907797_SNP [dm3] 3R_10082075_SNP [dm6]	C	T	2.286e^-4	0.918	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	458908	3L_458908_INS [dm3] 3L_458908_INS [dm6]	T	TT	2.299e^-4	0.919	INTRON klar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5847549	2R_5847549_SNP [dm3] 2R_9960044_SNP [dm6]	A	T	2.309e^-4	0.919	UTR_5_PRIME Pal1 UPSTREAM Pal1 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	12158622	X_12158622_SNP [dm3] X_12264589_SNP [dm6]	C	A	2.322e^-4	0.919	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	413106	3L_413106_SNP [dm3] 3L_413106_SNP [dm6]	C	T	2.322e^-4	0.919	INTERGENIC	TF binding site mE1_TFBS_Kr
X	21160844	X_21160844_SNP [dm3] X_21289817_SNP [dm6]	G	C	2.330e^-4	0.919	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5810038	X_5810038_SNP [dm3] X_5916005_SNP [dm6]	T	C	2.333e^-4	0.919	UPSTREAM CG3011 INTRON CG3011
X	12699254	X_12699254_SNP [dm3] X_12805221_SNP [dm6]	G	T	2.334e^-4	0.919	DOWNSTREAM CG3775 INTRON Pde9
2R	17619429	2R_17619429_SNP [dm3] 2R_21731924_SNP [dm6]	T	C	2.334e^-4	0.919	INTERGENIC
3L	14406648	3L_14406648_SNP [dm3] 3L_14413548_SNP [dm6]	A	C	2.345e^-4	0.919	DOWNSTREAM CG3919 INTRON bbg
2L	7882889	2L_7882889_SNP [dm3] 2L_7882889_SNP [dm6]	A	G	2.347e^-4	0.919	DOWNSTREAM CG7102 INTERGENIC
3L	14827396	3L_14827396_SNP [dm3] 3L_14834296_SNP [dm6]	G	A	2.351e^-4	0.919	INTRON CG17839
3L	712376	3L_712376_SNP [dm3] 3L_712376_SNP [dm6]	G	A	2.354e^-4	0.919	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	22249633	3R_22249633_SNP [dm3] 3R_26423911_SNP [dm6]	T	C	2.357e^-4	0.919	DOWNSTREAM CG6503 INTERGENIC
3L	17968076	3L_17968076_SNP [dm3] 3L_17974976_SNP [dm6]	T	G	2.366e^-4	0.919	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	705496	3L_705496_SNP [dm3] 3L_705496_SNP [dm6]	C	G	2.367e^-4	0.919	DOWNSTREAM CG13895 EXON CR44514
X	14167632	X_14167632_SNP [dm3] X_14273599_SNP [dm6]	G	T	2.369e^-4	0.919	INTRON na	TF binding site mE1_TFBS_inv
3L	9652468	3L_9652468_SNP [dm3] 3L_9659368_SNP [dm6]	T	G	2.373e^-4	0.919	UTR_3_PRIME CG33696 INTRON fry
3L	14834173	3L_14834173_INS [dm3] 3L_14841073_INS [dm6]	A	ATTGCAT	2.377e^-4	0.919	INTRON CG17839
3R	26152136	3R_26152136_SNP [dm3] 3R_30326414_SNP [dm6]	A	G	2.381e^-4	0.919	INTRON hdc
3L	5503177	3L_5503177_SNP [dm3] 3L_5510077_SNP [dm6]	T	G	2.392e^-4	0.921	INTRON CG34342
X	2010415	X_2010415_SNP [dm3] X_2116382_SNP [dm6]	T	C	2.401e^-4	0.921	UTR_3_PRIME ph-d DOWNSTREAM csw	TF binding site mE1_TFBS_sens
X	14523866	X_14523866_INS [dm3] X_14629833_INS [dm6]	G	GTGGGACATACGGACAG...	2.403e^-4	0.921	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14167542	X_14167542_SNP [dm3] X_14273509_SNP [dm6]	G	A	2.425e^-4	0.928	INTRON na
2L	3796978	2L_3796978_SNP [dm3] 2L_3796978_SNP [dm6]	C	T	2.431e^-4	0.928	SYNONYMOUS_CODING CG3921
3L	14814978	3L_14814978_SNP [dm3] 3L_14821878_SNP [dm6]	A	G	2.447e^-4	0.931	INTRON CG17839
3R	20479089	3R_20479089_SNP [dm3] 3R_24653367_SNP [dm6]	T	C	2.447e^-4	0.931	UTR_3_PRIME ash2 DOWNSTREAM CG31125	TF binding site mE1_TFBS_chinmo
2R	15428091	2R_15428091_SNP [dm3] 2R_19540586_SNP [dm6]	C	A	2.479e^-4	0.931	INTRON sm
3L	6688251	3L_6688251_INS [dm3] 3L_6695151_INS [dm6]	G	GACGGCTTTGCCG...	2.480e^-4	0.931	INTRON SP1173
2L	5883882	2L_5883882_SNP [dm3] 2L_5883882_SNP [dm6]	C	A	2.481e^-4	0.931	NON_SYNONYMOUS_CODING CG44574 DOWNSTREAM Sfp26Ac
3R	5963561	3R_5963561_SNP [dm3] 3R_10137839_SNP [dm6]	T	C	2.486e^-4	0.931	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	10488763	2L_10488763_SNP [dm3] 2L_10488763_SNP [dm6]	G	A	2.488e^-4	0.931	UTR_5_PRIME CG6144 UPSTREAM CG6144 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8505284	2L_8505284_SNP [dm3] 2L_8505284_SNP [dm6]	C	A	2.496e^-4	0.931	INTRON Dh31
X	21950030	X_21950030_SNP [dm3] X_22548194_SNP [dm6]	T	C	2.498e^-4	0.931	DOWNSTREAM CG17601 INTERGENIC
3L	14388810	3L_14388810_SNP [dm3] 3L_14395710_SNP [dm6]	A	C	2.505e^-4	0.931	INTERGENIC
2L	22312881	2L_22312881_SNP [dm3] 2L_22312881_SNP [dm6]	T	A	2.506e^-4	0.931	INTRON CG17018
2L	5543854	2L_5543854_SNP [dm3] 2L_5543854_SNP [dm6]	G	A	2.511e^-4	0.931	INTRON Lam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	6743782	2L_6743782_INS [dm3] 2L_6743782_INS [dm6]	A	ACTA	2.515e^-4	0.931	DOWNSTREAM CG31910 INTRON CG11221
X	20397375	X_20397375_DEL [dm3] X_20526348_DEL [dm6]	TT	T	2.517e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	27002250	3R_27002250_SNP [dm3] 3R_31176528_SNP [dm6]	A	C	2.520e^-4	0.931	INTRON Gycbeta100B
3R	27198071	3R_27198071_SNP [dm3] 3R_31372349_SNP [dm6]	A	T	2.526e^-4	0.931	UPSTREAM gskt DOWNSTREAM CG34347 INTERGENIC
3L	14213579	3L_14213579_DEL [dm3] 3L_14220479_DEL [dm6]	TT	T	2.531e^-4	0.931	UPSTREAM nuf INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	27130631	3R_27130631_SNP [dm3] 3R_31304909_SNP [dm6]	G	C	2.532e^-4	0.931	INTRON CG11340	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10688294	3R_10688294_SNP [dm3] 3R_14862572_SNP [dm6]	G	A	2.538e^-4	0.931	INTRON btsz
3R	25405876	3R_25405876_SNP [dm3] 3R_29580154_SNP [dm6]	A	G	2.544e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	9806536	3L_9806536_SNP [dm3] 3L_9813436_SNP [dm6]	A	T	2.554e^-4	0.931	UPSTREAM CG43897 INTERGENIC
2R	13415561	2R_13415561_SNP [dm3] 2R_17528056_SNP [dm6]	A	G	2.557e^-4	0.931	SYNONYMOUS_CODING Patronin
3R	5654826	3R_5654826_SNP [dm3] 3R_9829104_SNP [dm6]	A	T	2.560e^-4	0.931	INTRON Teh1
2R	13242799	2R_13242799_SNP [dm3] 2R_17355294_SNP [dm6]	T	G	2.563e^-4	0.931	INTRON mbl
X	20443347	X_20443347_INS [dm3] X_20572320_INS [dm6]	T	TT	2.564e^-4	0.931	INTERGENIC
2L	7364596	2L_7364596_SNP [dm3] 2L_7364596_SNP [dm6]	G	A	2.570e^-4	0.931	UTR_5_PRIME Wnt10
X	5744978	X_5744978_INS [dm3] X_5850945_INS [dm6]	C	CAACCAACC	2.577e^-4	0.931	INTERGENIC
2R	4241939	2R_4241939_SNP [dm3] 2R_8354434_SNP [dm6]	T	G	2.578e^-4	0.931	INTRON pdm3
3R	19226866	3R_19226866_SNP [dm3] 3R_23401144_SNP [dm6]	A	T	2.582e^-4	0.931	INTERGENIC
3R	10689419	3R_10689419_INS [dm3] 3R_14863697_INS [dm6]	A	ACAGAGACCCTCT...	2.597e^-4	0.933	INTRON btsz
X	5462305	X_5462305_INS [dm3] X_5568272_INS [dm6]	A	ACACA	2.599e^-4	0.933	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	12923423	2L_12923423_SNP [dm3] 2L_12923423_SNP [dm6]	T	G	2.607e^-4	0.934	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
X	9808022	X_9808022_SNP [dm3] X_9913989_SNP [dm6]	C	T	2.610e^-4	0.934	INTERGENIC
2L	588419	2L_588419_SNP [dm3] 2L_588419_SNP [dm6]	T	A	2.629e^-4	0.936	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
2L	6090262	2L_6090262_SNP [dm3] 2L_6090262_SNP [dm6]	T	C	2.630e^-4	0.936	INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3R	20786039	3R_20786039_SNP [dm3] 3R_24960317_SNP [dm6]	C	A	2.631e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14624053	3R_14624053_SNP [dm3] 3R_18798331_SNP [dm6]	G	A	2.637e^-4	0.936	DOWNSTREAM CG18208 INTERGENIC
2L	10525649	2L_10525649_SNP [dm3] 2L_10525649_SNP [dm6]	T	C	2.644e^-4	0.937	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20781035	3L_20781035_SNP [dm3] 3L_20787935_SNP [dm6]	G	A	2.655e^-4	0.939	SYNONYMOUS_CODING CG11396 DOWNSTREAM Six4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	712343	3L_712343_SNP [dm3] 3L_712343_SNP [dm6]	A	C	2.661e^-4	0.939	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	16081880	2L_16081880_SNP [dm3] 2L_16081880_SNP [dm6]	C	A	2.671e^-4	0.939	DOWNSTREAM beat-Ia INTERGENIC
3L	9252258	3L_9252258_SNP [dm3] 3L_9259158_SNP [dm6]	A	T	2.674e^-4	0.939	INTRON GluRIB	TF binding site mE1_TFBS_HSA
3R	14389108	3R_14389108_SNP [dm3] 3R_18563386_SNP [dm6]	A	C	2.677e^-4	0.939	DOWNSTREAM CG43210 & 1 other INTERGENIC
X	15995491	X_15995491_SNP [dm3] X_16101458_SNP [dm6]	A	T	2.680e^-4	0.939	INTRON CG42354 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14167553	X_14167553_SNP [dm3] X_14273520_SNP [dm6]	C	T	2.695e^-4	0.939	INTRON na
X	20526879	X_20526879_SNP [dm3] X_20655852_SNP [dm6]	C	T	2.698e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16289158	2R_16289158_DEL [dm3] 2R_20401653_DEL [dm6]	CCG	C	2.701e^-4	0.939	INTERGENIC
3R	15206358	3R_15206358_SNP [dm3] 3R_19380636_SNP [dm6]	G	C	2.707e^-4	0.939	INTRON Ino80
2R	14276365	2R_14276365_SNP [dm3] 2R_18388860_SNP [dm6]	T	A	2.708e^-4	0.939	UPSTREAM CG16836 DOWNSTREAM IM3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14388813	3L_14388813_SNP [dm3] 3L_14395713_SNP [dm6]	G	A	2.714e^-4	0.939	INTERGENIC
2L	22296946	2L_22296946_SNP [dm3] 2L_22296946_SNP [dm6]	A	G	2.729e^-4	0.939	INTERGENIC	transposable element FlyBase
3R	27130557	3R_27130557_SNP [dm3] 3R_31304835_SNP [dm6]	T	A	2.730e^-4	0.939	INTRON CG11340	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4545923	3L_4545923_SNP [dm3] 3L_4545923_SNP [dm6]	T	A	2.730e^-4	0.939	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	18842831	2L_18842831_SNP [dm3] 2L_18842831_SNP [dm6]	G	A	2.732e^-4	0.939	SYNONYMOUS_CODING CG33120
3R	24722897	3R_24722897_SNP [dm3] 3R_28897175_SNP [dm6]	T	A	2.734e^-4	0.939	INTRON Doa
2L	6100946	2L_6100946_SNP [dm3] 2L_6100946_SNP [dm6]	G	A	2.745e^-4	0.939	INTRON stai	TF binding site BDTNP1_TFBS_dl
2R	9147482	2R_9147482_SNP [dm3] 2R_13259977_SNP [dm6]	A	G	2.750e^-4	0.939	UPSTREAM CG42319 INTERGENIC
2R	14451040	2R_14451040_SNP [dm3] 2R_18563535_SNP [dm6]	A	G	2.754e^-4	0.939	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19217624	3R_19217624_SNP [dm3] 3R_23391902_SNP [dm6]	G	A	2.765e^-4	0.939	INTERGENIC
3L	9650634	3L_9650634_SNP [dm3] 3L_9657534_SNP [dm6]	T	A	2.768e^-4	0.939	INTRON fry & 1 other
2L	9504688	2L_9504688_SNP [dm3] 2L_9504688_SNP [dm6]	G	A	2.774e^-4	0.939	SYNONYMOUS_CODING CG33298
3L	17693156	3L_17693156_SNP [dm3] 3L_17700056_SNP [dm6]	T	A	2.778e^-4	0.939	INTRON Ccn
3R	2868309	3R_2868309_SNP [dm3] 3R_7042587_SNP [dm6]	G	A	2.778e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	27130562	3R_27130562_SNP [dm3] 3R_31304840_SNP [dm6]	G	T	2.780e^-4	0.939	INTRON CG11340	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18013873	2R_18013873_SNP [dm3] 2R_22126368_SNP [dm6]	T	C	2.790e^-4	0.939	SYNONYMOUS_CODING GM130	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7948802	3L_7948802_SNP [dm3] 3L_7955702_SNP [dm6]	A	G	2.794e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3920733	3L_3920733_SNP [dm3] 3L_3920733_SNP [dm6]	G	T	2.795e^-4	0.939	INTRON Eip63F-1
2R	13238951	2R_13238951_DEL [dm3] 2R_17351446_DEL [dm6]	GCGCGAAAATGAGTCAAAGA...	G	2.804e^-4	0.939	INTRON mbl
2L	21900248	2L_21900248_SNP [dm3] 2L_21900248_SNP [dm6]	T	C	2.817e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	837603	3L_837603_SNP [dm3] 3L_837603_SNP [dm6]	C	T	2.819e^-4	0.939	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	1347343	2L_1347343_INS [dm3] 2L_1347343_INS [dm6]	T	TTGATTT	2.822e^-4	0.939	INTERGENIC
2L	10085825	2L_10085825_SNP [dm3] 2L_10085825_SNP [dm6]	C	T	2.824e^-4	0.939	INTRON CG44153
2L	10488805	2L_10488805_SNP [dm3] 2L_10488805_SNP [dm6]	T	A	2.833e^-4	0.939	UTR_5_PRIME CG6144 UPSTREAM CG6144 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	20342166	3R_20342166_SNP [dm3] 3R_24516444_SNP [dm6]	G	A	2.852e^-4	0.939	SYNONYMOUS_CODING CG13617	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	15748170	X_15748170_SNP [dm3] X_15854137_SNP [dm6]	G	C	2.853e^-4	0.939	SYNONYMOUS_CODING CG15914 UPSTREAM UBL3 DOWNSTREAM Myb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	12025610	3L_12025610_SNP [dm3] 3L_12032510_SNP [dm6]	A	T	2.860e^-4	0.939	UPSTREAM CG43993 INTRON rols
3L	17784937	3L_17784937_SNP [dm3] 3L_17791837_SNP [dm6]	C	A	2.865e^-4	0.939	UPSTREAM CG42815 DOWNSTREAM CG42816 INTERGENIC
X	5253608	X_5253608_SNP [dm3] X_5359575_SNP [dm6]	C	A	2.867e^-4	0.939	INTRON SK
X	18931096	X_18931096_SNP [dm3] X_19037063_SNP [dm6]	A	T	2.871e^-4	0.939	INTERGENIC
2L	11852781	2L_11852781_SNP [dm3] 2L_11852781_SNP [dm6]	A	C	2.879e^-4	0.939	UTR_3_PRIME Mal-B2 UPSTREAM CG42751 DOWNSTREAM Mal-B2 INTRON Pde1c
2L	13947108	2L_13947108_SNP [dm3] 2L_13947108_SNP [dm6]	T	A	2.883e^-4	0.939	UTR_5_PRIME CG16884 INTRON Ance-3
3L	712374	3L_712374_SNP [dm3] 3L_712374_SNP [dm6]	G	C	2.885e^-4	0.939	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	13557427	3L_13557427_INS [dm3] 3L_13564327_INS [dm6]	G	TA	2.886e^-4	0.939	INTRON bru-3
3L	13557430	3L_13557430_DEL [dm3] 3L_13564330_DEL [dm6]	GTTT	G	2.886e^-4	0.939	INTRON bru-3
2L	19924745	2L_19924745_SNP [dm3] 2L_19924745_SNP [dm6]	C	T	2.890e^-4	0.939	INTRON sick
3L	15236814	3L_15236814_SNP [dm3] 3L_15243714_SNP [dm6]	G	T	2.898e^-4	0.939	DOWNSTREAM Tollo INTERGENIC
3L	5372382	3L_5372382_SNP [dm3] 3L_5379282_SNP [dm6]	G	A	2.904e^-4	0.939	SYNONYMOUS_CODING Ir64a DOWNSTREAM CR45743
2L	19797389	2L_19797389_SNP [dm3] 2L_19797389_SNP [dm6]	T	C	2.928e^-4	0.939	INTRON sick
3R	10852895	3R_10852895_SNP [dm3] 3R_15027173_SNP [dm6]	C	T	2.932e^-4	0.939	INTERGENIC
3R	10801446	3R_10801446_SNP [dm3] 3R_14975724_SNP [dm6]	G	T	2.943e^-4	0.939	INTERGENIC
X	13934392	X_13934392_SNP [dm3] X_14040359_SNP [dm6]	G	C	2.943e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6797948	2R_6797948_SNP [dm3] 2R_10910443_SNP [dm6]	G	T	2.946e^-4	0.939	NON_SYNONYMOUS_CODING Obp47a
2L	3826302	2L_3826302_SNP [dm3] 2L_3826302_SNP [dm6]	C	T	2.951e^-4	0.939	SYNONYMOUS_CODING slp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14388986	3R_14388986_SNP [dm3] 3R_18563264_SNP [dm6]	G	T	2.956e^-4	0.939	DOWNSTREAM CG43210 & 1 other INTERGENIC
3R	7274693	3R_7274693_SNP [dm3] 3R_11448971_SNP [dm6]	A	G	2.960e^-4	0.939	INTRON CG17230 & 1 other
X	15865429	X_15865429_SNP [dm3] X_15971396_SNP [dm6]	A	T	2.978e^-4	0.939	INTRON mmd
2L	5542022	2L_5542022_SNP [dm3] 2L_5542022_SNP [dm6]	T	A	2.979e^-4	0.939	UPSTREAM Lam & 1 other INTRON Hel25E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	8582618	3L_8582618_SNP [dm3] 3L_8589518_SNP [dm6]	T	C	2.982e^-4	0.939	UPSTREAM CG43078 INTRON CG43078
2L	5735339	2L_5735339_SNP [dm3] 2L_5735339_SNP [dm6]	A	G	2.985e^-4	0.939	SYNONYMOUS_CODING CG11147 INTRON CG11030	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6797422	2R_6797422_SNP [dm3] 2R_10909917_SNP [dm6]	A	T	2.994e^-4	0.939	UPSTREAM Obp47a INTERGENIC
X	17711858	X_17711858_SNP [dm3] X_17817825_SNP [dm6]	G	A	2.994e^-4	0.939	INTERGENIC
2R	9147422	2R_9147422_SNP [dm3] 2R_13259917_SNP [dm6]	A	T	2.998e^-4	0.939	UPSTREAM CG42319 INTERGENIC
X	4050096	X_4050096_INS [dm3] X_4156063_INS [dm6]	T	TT	3.007e^-4	0.939	INTRON Fas2
3L	7593284	3L_7593284_SNP [dm3] 3L_7600184_SNP [dm6]	A	T	3.008e^-4	0.939	INTRON CG33275
2L	6090275	2L_6090275_SNP [dm3] 2L_6090275_SNP [dm6]	C	A	3.012e^-4	0.939	INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
X	19420889	X_19420889_SNP [dm3] X_19526856_SNP [dm6]	A	C	3.014e^-4	0.939	NON_SYNONYMOUS_CODING CoRest INTRON CoRest	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5853354	2R_5853354_SNP [dm3] 2R_9965849_SNP [dm6]	C	A	3.015e^-4	0.939	UPSTREAM CG1418 INTERGENIC
2R	10699778	2R_10699778_SNP [dm3] 2R_14812273_SNP [dm6]	C	T	3.017e^-4	0.939	INTERGENIC	regulatory region REDfly_CRMs
2L	7338333	2L_7338333_SNP [dm3] 2L_7338333_SNP [dm6]	G	T	3.021e^-4	0.939	INTRON Wnt6
2R	12631791	2R_12631791_SNP [dm3] 2R_16744286_SNP [dm6]	G	A	3.028e^-4	0.939	DOWNSTREAM Sfp53D & 1 other INTERGENIC
2R	5858102	2R_5858102_SNP [dm3] 2R_9970597_SNP [dm6]	A	T	3.029e^-4	0.939	UTR_3_PRIME Adam UPSTREAM CG12134	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	5858509	2R_5858509_SNP [dm3] 2R_9971004_SNP [dm6]	T	A	3.029e^-4	0.939	UPSTREAM CG12134 DOWNSTREAM Adam INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	10699790	2R_10699790_SNP [dm3] 2R_14812285_SNP [dm6]	T	C	3.036e^-4	0.939	INTERGENIC	regulatory region REDfly_CRMs
3L	12241840	3L_12241840_DEL [dm3] 3L_12248740_DEL [dm6]	ATCAAATAG	A	3.041e^-4	0.939	INTRON app
3R	27175864	3R_27175864_SNP [dm3] 3R_31350142_SNP [dm6]	C	T	3.042e^-4	0.939	INTRON CG34347
2L	8505282	2L_8505282_SNP [dm3] 2L_8505282_SNP [dm6]	C	A	3.045e^-4	0.939	INTRON Dh31
3L	14832054	3L_14832054_SNP [dm3] 3L_14838954_SNP [dm6]	A	T	3.061e^-4	0.939	INTRON CG17839
3L	17155400	3L_17155400_SNP [dm3] 3L_17162300_SNP [dm6]	T	G	3.065e^-4	0.939	INTRON Rbp6	TF binding site mE1_TFBS_inv
2R	17558297	2R_17558297_SNP [dm3] 2R_21670792_SNP [dm6]	A	T	3.070e^-4	0.939	NON_SYNONYMOUS_CODING NC2alpha UPSTREAM CG9865 & 4 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10695984	3R_10695984_SNP [dm3] 3R_14870262_SNP [dm6]	G	A	3.076e^-4	0.939	INTRON btsz
3R	7280971	3R_7280971_SNP [dm3] 3R_11455249_SNP [dm6]	G	C	3.077e^-4	0.939	UPSTREAM PGRP-LB INTRON CG17230 & 1 other	TF binding site mE1_TFBS_inv
2L	19969006	2L_19969006_SNP [dm3] 2L_19969006_SNP [dm6]	A	T	3.079e^-4	0.939	UTR_3_PRIME CG43861 DOWNSTREAM CG43861
X	8610842	X_8610842_DEL [dm3] X_8716809_DEL [dm6]	AA	A	3.091e^-4	0.939	UTR_3_PRIME CG1785 & 1 other
3L	14421261	3L_14421261_SNP [dm3] 3L_14428161_SNP [dm6]	G	C	3.092e^-4	0.939	UPSTREAM bbg INTRON bbg
X	15995488	X_15995488_SNP [dm3] X_16101455_SNP [dm6]	T	C	3.097e^-4	0.939	INTRON CG42354 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12809255	2R_12809255_SNP [dm3] 2R_16921750_SNP [dm6]	C	T	3.098e^-4	0.939	INTERGENIC
2R	18259230	2R_18259230_INS [dm3] 2R_22371725_INS [dm6]	G	GTTTTGAAACCGGCAAACAA...	3.101e^-4	0.939	INTRON Liprin-gamma
3R	19226853	3R_19226853_SNP [dm3] 3R_23401131_SNP [dm6]	A	G	3.117e^-4	0.939	INTERGENIC
3L	9651498	3L_9651498_SNP [dm3] 3L_9658398_SNP [dm6]	T	C	3.121e^-4	0.939	INTRON fry & 1 other	TF binding site mE1_TFBS_inv
3L	3932970	3L_3932970_SNP [dm3] 3L_3932970_SNP [dm6]	C	T	3.132e^-4	0.939	INTRON Eip63F-1
3R	24132555	3R_24132555_SNP [dm3] 3R_28306833_SNP [dm6]	A	G	3.136e^-4	0.939	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	427267	3L_427267_SNP [dm3] 3L_427267_SNP [dm6]	T	C	3.138e^-4	0.939	INTERGENIC
3L	427269	3L_427269_SNP [dm3] 3L_427269_SNP [dm6]	A	T	3.138e^-4	0.939	INTERGENIC
X	6553564	X_6553564_DEL [dm3] X_6659531_DEL [dm6]	AA	A	3.138e^-4	0.939	UTR_3_PRIME l_1_G0148
3R	26195343	3R_26195343_SNP [dm3] 3R_30369621_SNP [dm6]	T	A	3.153e^-4	0.939	UTR_3_PRIME hdc
3R	24132528	3R_24132528_SNP [dm3] 3R_28306806_SNP [dm6]	T	A	3.155e^-4	0.939	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	20342139	3R_20342139_SNP [dm3] 3R_24516417_SNP [dm6]	C	T	3.164e^-4	0.939	SYNONYMOUS_CODING CG13617	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10085830	2L_10085830_DEL [dm3] 2L_10085830_DEL [dm6]	AAA	A	3.165e^-4	0.939	INTRON CG44153
3L	20791752	3L_20791752_SNP [dm3] 3L_20798652_SNP [dm6]	T	A	3.166e^-4	0.939	UTR_5_PRIME CG4365 UPSTREAM CG4365 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	4862565	3L_4862565_DEL [dm3] 3L_4862565_DEL [dm6]	AATATATG	A	3.170e^-4	0.939	INTRON CG17150
2R	17607842	2R_17607842_SNP [dm3] 2R_21720337_SNP [dm6]	G	A	3.173e^-4	0.939	UPSTREAM LBR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2R	10699794	2R_10699794_SNP [dm3] 2R_14812289_SNP [dm6]	A	T	3.177e^-4	0.939	INTERGENIC	regulatory region REDfly_CRMs
2L	10488700	2L_10488700_SNP [dm3] 2L_10488700_SNP [dm6]	A	C	3.178e^-4	0.939	UTR_5_PRIME CG6144 UPSTREAM CG6144 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2L	21079196	2L_21079196_SNP [dm3] 2L_21079196_SNP [dm6]	G	T	3.183e^-4	0.939	INTRON tadr
2R	15839481	2R_15839481_SNP [dm3] 2R_19951976_SNP [dm6]	C	G	3.184e^-4	0.939	DOWNSTREAM CG10822 INTERGENIC
2L	10488840	2L_10488840_SNP [dm3] 2L_10488840_SNP [dm6]	G	T	3.202e^-4	0.941	UTR_5_PRIME CG6144 UPSTREAM CG6144 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9771546	3R_9771546_SNP [dm3] 3R_13945824_SNP [dm6]	T	A	3.206e^-4	0.941	UPSTREAM Art6 INTERGENIC
2R	9472393	2R_9472393_SNP [dm3] 2R_13584888_SNP [dm6]	A	G	3.237e^-4	0.941	INTRON CG6191 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1
3R	5905233	3R_5905233_SNP [dm3] 3R_10079511_SNP [dm6]	C	T	3.244e^-4	0.941	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	412023	3L_412023_SNP [dm3] 3L_412023_SNP [dm6]	G	T	3.246e^-4	0.941	INTERGENIC
X	14044781	X_14044781_SNP [dm3] X_14150748_SNP [dm6]	C	A	3.250e^-4	0.941	DOWNSTREAM CG12479 INTERGENIC
X	18738475	X_18738475_SNP [dm3] X_18844442_SNP [dm6]	G	T	3.254e^-4	0.941	INTRON CG34422	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
3L	7480613	3L_7480613_SNP [dm3] 3L_7487513_SNP [dm6]	A	G	3.272e^-4	0.941	INTRON mthl6
X	20271990	X_20271990_SNP [dm3] X_20400963_SNP [dm6]	C	T	3.275e^-4	0.941	SYNONYMOUS_CODING HERC2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20232228	3R_20232228_SNP [dm3] 3R_24406506_SNP [dm6]	G	A	3.275e^-4	0.941	INTRON nAChRalpha1
3R	19226924	3R_19226924_SNP [dm3] 3R_23401202_SNP [dm6]	T	A	3.277e^-4	0.941	INTERGENIC
3R	18206382	3R_18206382_SNP [dm3] 3R_22380660_SNP [dm6]	C	T	3.278e^-4	0.941	NON_SYNONYMOUS_CODING CG34149 UPSTREAM CG43342 DOWNSTREAM CG18596	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	19974125	2L_19974125_SNP [dm3] 2L_19974125_SNP [dm6]	G	A	3.278e^-4	0.941	INTRON CG43861
2L	2922839	2L_2922839_DEL [dm3] 2L_2922839_DEL [dm6]	TT	T	3.287e^-4	0.941	INTRON lilli
2R	8360529	2R_8360529_SNP [dm3] 2R_12473024_SNP [dm6]	T	G	3.291e^-4	0.941	SYNONYMOUS_CODING CG8550
2L	19217493	2L_19217493_SNP [dm3] 2L_19217493_SNP [dm6]	T	C	3.295e^-4	0.941	EXON CR44189	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_sens
3L	711857	3L_711857_SNP [dm3] 3L_711857_SNP [dm6]	A	C	3.302e^-4	0.941	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	14376180	3L_14376180_SNP [dm3] 3L_14383080_SNP [dm6]	C	T	3.305e^-4	0.941	UTR_3_PRIME CG43120
3R	15000216	3R_15000216_SNP [dm3] 3R_19174494_SNP [dm6]	A	C	3.305e^-4	0.941	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_hb
2R	20337851	2R_20337851_SNP [dm3] 2R_24450328_SNP [dm6]	G	A	3.310e^-4	0.941	DOWNSTREAM CG4563 INTERGENIC
X	11181864	X_11181864_SNP [dm3] X_11287831_SNP [dm6]	T	A	3.330e^-4	0.941	INTRON CG44422
3L	14814091	3L_14814091_SNP [dm3] 3L_14820991_SNP [dm6]	G	A	3.330e^-4	0.941	INTRON CG17839
3L	14814092	3L_14814092_SNP [dm3] 3L_14820992_SNP [dm6]	T	A	3.330e^-4	0.941	INTRON CG17839
3L	4759676	3L_4759676_DEL [dm3] 3L_4759676_DEL [dm6]	CC	C	3.333e^-4	0.941	DOWNSTREAM CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	711790	3L_711790_SNP [dm3] 3L_711790_SNP [dm6]	A	T	3.334e^-4	0.941	UTR_5_PRIME CG13896	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	712235	3L_712235_SNP [dm3] 3L_712235_SNP [dm6]	C	T	3.334e^-4	0.941	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	10699904	3L_10699904_INS [dm3] 3L_10706804_INS [dm6]	A	AA	3.337e^-4	0.941	INTERGENIC
3R	2708583	3R_2708583_SNP [dm3] 3R_6882861_SNP [dm6]	A	T	3.343e^-4	0.941	INTRON CR44931	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	5988753	3L_5988753_SNP [dm3] 3L_5995653_SNP [dm6]	C	G	3.343e^-4	0.941	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	10440314	3R_10440314_SNP [dm3] 3R_14614592_SNP [dm6]	C	T	3.353e^-4	0.941	INTRON CG14853
2L	17557568	2L_17557568_SNP [dm3] 2L_17557568_SNP [dm6]	C	T	3.363e^-4	0.941	INTERGENIC
2L	10565655	2L_10565655_SNP [dm3] 2L_10565655_SNP [dm6]	G	C	3.380e^-4	0.941	INTRON Trim9
3L	11927532	3L_11927532_SNP [dm3] 3L_11934432_SNP [dm6]	G	T	3.381e^-4	0.941	SYNONYMOUS_CODING byn INTRON CG44837	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21894134	2L_21894134_SNP [dm3] 2L_21894134_SNP [dm6]	T	A	3.398e^-4	0.941	UPSTREAM CR43762 INTERGENIC	TF binding site mE1_TFBS_cad
3L	1604649	3L_1604649_SNP [dm3] 3L_1604649_SNP [dm6]	A	T	3.417e^-4	0.941	UTR_5_PRIME CG33791 UTR_3_PRIME CG18170 UPSTREAM CG33791
2R	10925619	2R_10925619_SNP [dm3] 2R_15038114_SNP [dm6]	A	G	3.420e^-4	0.941	INTRON hbs
2L	2244028	2L_2244028_SNP [dm3] 2L_2244028_SNP [dm6]	C	T	3.422e^-4	0.941	SYNONYMOUS_CODING CG4267
2L	5557570	2L_5557570_SNP [dm3] 2L_5557570_SNP [dm6]	T	A	3.426e^-4	0.941	INTRON GluRIIA
2L	5544156	2L_5544156_SNP [dm3] 2L_5544156_SNP [dm6]	A	C	3.430e^-4	0.941	NON_SYNONYMOUS_CODING Lam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2683655	3L_2683655_SNP [dm3] 3L_2683655_SNP [dm6]	A	G	3.437e^-4	0.941	INTRON Fife
3R	24829701	3R_24829701_SNP [dm3] 3R_29003979_SNP [dm6]	C	G	3.441e^-4	0.941	INTRON wat
2R	9147438	2R_9147438_SNP [dm3] 2R_13259933_SNP [dm6]	G	A	3.444e^-4	0.941	UPSTREAM CG42319 INTERGENIC
2L	18735552	2L_18735552_SNP [dm3] 2L_18735552_SNP [dm6]	C	A	3.445e^-4	0.941	UPSTREAM CR44769 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	22435344	3R_22435344_SNP [dm3] 3R_26609622_SNP [dm6]	A	C	3.450e^-4	0.941	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	7046624	3L_7046624_SNP [dm3] 3L_7053524_SNP [dm6]	C	T	3.451e^-4	0.941	DOWNSTREAM Mp INTERGENIC
2L	13983099	2L_13983099_SNP [dm3] 2L_13983099_SNP [dm6]	G	A	3.461e^-4	0.941	UTR_3_PRIME NimC2 & 1 other DOWNSTREAM NimC2
3R	16008756	3R_16008756_SNP [dm3] 3R_20183034_SNP [dm6]	G	T	3.464e^-4	0.941	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22267450	X_22267450_SNP [dm3] X_22865614_SNP [dm6]	A	T	3.469e^-4	0.941	INTRON CG42346
3L	604975	3L_604975_SNP [dm3] 3L_604975_SNP [dm6]	T	C	3.474e^-4	0.941	UPSTREAM CG13893 DOWNSTREAM Reg-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
3R	10440451	3R_10440451_SNP [dm3] 3R_14614729_SNP [dm6]	C	T	3.480e^-4	0.941	INTRON CG14853
2R	11576600	2R_11576600_SNP [dm3] 2R_15689095_SNP [dm6]	G	T	3.484e^-4	0.941	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16541239	2R_16541239_SNP [dm3] 2R_20653734_SNP [dm6]	T	A	3.493e^-4	0.941	INTRON Lrt & 1 other
2L	5090404	2L_5090404_SNP [dm3] 2L_5090404_SNP [dm6]	G	T	3.500e^-4	0.941	INTRON pgant5
2L	22124530	2L_22124530_SNP [dm3] 2L_22124530_SNP [dm6]	A	C	3.507e^-4	0.941	UTR_3_PRIME CycK INTRON CG3651	TF binding site BDTNP1_TFBS_dl
X	21950071	X_21950071_SNP [dm3] X_22548235_SNP [dm6]	T	C	3.507e^-4	0.941	DOWNSTREAM CG17601 INTERGENIC
X	20527636	X_20527636_SNP [dm3] X_20656609_SNP [dm6]	A	T	3.516e^-4	0.941	UPSTREAM Cyp6v1 DOWNSTREAM CR45466 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	14154451	X_14154451_SNP [dm3] X_14260418_SNP [dm6]	A	G	3.533e^-4	0.941	UPSTREAM CG1461 INTERGENIC
3L	12571334	3L_12571334_SNP [dm3] 3L_12578234_SNP [dm6]	A	T	3.547e^-4	0.941	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20337296	2R_20337296_SNP [dm3] 2R_24449773_SNP [dm6]	A	T	3.547e^-4	0.941	INTERGENIC
2R	3532668	2R_3532668_SNP [dm3] 2R_7645163_SNP [dm6]	T	C	3.578e^-4	0.941	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340	TF binding site mE1_TFBS_sens
3R	8203557	3R_8203557_SNP [dm3] 3R_12377835_SNP [dm6]	G	T	3.587e^-4	0.941	UTR_3_PRIME GstD6 UPSTREAM GstD7
3L	17217720	3L_17217720_SNP [dm3] 3L_17224620_SNP [dm6]	A	G	3.590e^-4	0.941	INTRON Rbp6
2L	9574780	2L_9574780_SNP [dm3] 2L_9574780_SNP [dm6]	A	G	3.592e^-4	0.941	SYNONYMOUS_CODING Mtpalpha	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20860404	2L_20860404_SNP [dm3] 2L_20860404_SNP [dm6]	C	T	3.594e^-4	0.941	INTRON CG9336
3R	22289371	3R_22289371_SNP [dm3] 3R_26463649_SNP [dm6]	A	G	3.598e^-4	0.941	INTRON CG5455
2R	13414840	2R_13414840_SNP [dm3] 2R_17527335_SNP [dm6]	G	A	3.603e^-4	0.941	INTRON Patronin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22780809	3R_22780809_SNP [dm3] 3R_26955087_SNP [dm6]	T	C	3.603e^-4	0.941	INTRON CG6330
3L	9652072	3L_9652072_SNP [dm3] 3L_9658972_SNP [dm6]	G	C	3.604e^-4	0.941	UTR_3_PRIME CG33696 INTRON fry	TF binding site mE1_TFBS_inv
3L	8816837	3L_8816837_SNP [dm3] 3L_8823737_SNP [dm6]	G	T	3.605e^-4	0.941	INTERGENIC	TF binding site mE1_TFBS_cad
3L	10688794	3L_10688794_SNP [dm3] 3L_10695694_SNP [dm6]	C	T	3.616e^-4	0.941	NON_SYNONYMOUS_CODING NijA
2L	9562194	2L_9562194_SNP [dm3] 2L_9562194_SNP [dm6]	T	C	3.619e^-4	0.941	INTRON jp
3R	27194404	3R_27194404_SNP [dm3] 3R_31368682_SNP [dm6]	A	C	3.625e^-4	0.941	INTRON CG34347
2L	1101026	2L_1101026_SNP [dm3] 2L_1101026_SNP [dm6]	C	G	3.631e^-4	0.941	INTRON CG4629
3R	20282112	3R_20282112_SNP [dm3] 3R_24456390_SNP [dm6]	A	T	3.652e^-4	0.941	INTRON nAChRalpha1
2L	13637068	2L_13637068_SNP [dm3] 2L_13637068_SNP [dm6]	A	C	3.661e^-4	0.941	DOWNSTREAM kuz INTRON kuz
3R	5440336	3R_5440336_SNP [dm3] 3R_9614614_SNP [dm6]	C	T	3.664e^-4	0.941	INTRON CG8312
3L	7480629	3L_7480629_SNP [dm3] 3L_7487529_SNP [dm6]	C	T	3.669e^-4	0.941	INTRON mthl6
3L	10691472	3L_10691472_SNP [dm3] 3L_10698372_SNP [dm6]	T	A	3.674e^-4	0.941	INTERGENIC
2L	5457022	2L_5457022_SNP [dm3] 2L_5457022_SNP [dm6]	C	G	3.680e^-4	0.941	INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12907914	X_12907914_SNP [dm3] X_13013881_SNP [dm6]	C	T	3.694e^-4	0.941	INTRON rad
3R	10441975	3R_10441975_SNP [dm3] 3R_14616253_SNP [dm6]	C	T	3.696e^-4	0.941	INTRON CG14853
2R	5862306	2R_5862306_SNP [dm3] 2R_9974801_SNP [dm6]	T	C	3.706e^-4	0.941	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5862613	2R_5862613_SNP [dm3] 2R_9975108_SNP [dm6]	G	A	3.706e^-4	0.941	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	8582894	3L_8582894_SNP [dm3] 3L_8589794_SNP [dm6]	G	C	3.708e^-4	0.941	UPSTREAM CG43078 INTRON CG43078
2L	10488709	2L_10488709_SNP [dm3] 2L_10488709_SNP [dm6]	T	A	3.712e^-4	0.941	UTR_5_PRIME CG6144 UPSTREAM CG6144 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
3R	18480610	3R_18480610_SNP [dm3] 3R_22654888_SNP [dm6]	T	C	3.714e^-4	0.941	INTRON CG45058
3L	14828738	3L_14828738_SNP [dm3] 3L_14835638_SNP [dm6]	G	T	3.719e^-4	0.941	INTRON CG17839
X	21949938	X_21949938_SNP [dm3] X_22548102_SNP [dm6]	A	G	3.723e^-4	0.941	DOWNSTREAM CG17601 INTERGENIC
2R	13364779	2R_13364779_SNP [dm3] 2R_17477274_SNP [dm6]	A	T	3.727e^-4	0.941	UPSTREAM veil DOWNSTREAM CG43110 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
X	20267558	X_20267558_SNP [dm3] X_20396531_SNP [dm6]	G	A	3.730e^-4	0.941	NON_SYNONYMOUS_CODING HERC2	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
2R	19271482	2R_19271482_SNP [dm3] 2R_23383959_SNP [dm6]	T	C	3.737e^-4	0.941	UPSTREAM CG13551 DOWNSTREAM CG30414 EXON CR44784	TF binding site BDTNP1_TFBS_dl
X	20265041	X_20265041_SNP [dm3] X_20394014_SNP [dm6]	A	G	3.738e^-4	0.941	UPSTREAM HERC2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	14511442	X_14511442_SNP [dm3] X_14617409_SNP [dm6]	C	T	3.742e^-4	0.941	INTRON NetA
X	4536298	X_4536298_SNP [dm3] X_4642265_SNP [dm6]	G	C	3.750e^-4	0.941	SYNONYMOUS_CODING CG3062 UTR_5_PRIME CG3081	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9466382	2R_9466382_SNP [dm3] 2R_13578877_SNP [dm6]	G	T	3.754e^-4	0.941	EXON CR44366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5548938	2L_5548938_SNP [dm3] 2L_5548938_SNP [dm6]	G	C	3.758e^-4	0.941	UTR_3_PRIME Oscillin DOWNSTREAM CG14014 INTRON Oscillin
X	6498248	X_6498248_SNP [dm3] X_6604215_SNP [dm6]	A	C	3.758e^-4	0.941	INTRON pigs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14816407	3L_14816407_SNP [dm3] 3L_14823307_SNP [dm6]	T	G	3.761e^-4	0.941	INTRON CG17839
3R	10689540	3R_10689540_SNP [dm3] 3R_14863818_SNP [dm6]	A	T	3.768e^-4	0.941	INTRON btsz
3L	20793434	3L_20793434_SNP [dm3] 3L_20800334_SNP [dm6]	T	G	3.777e^-4	0.941	UPSTREAM Spc105R DOWNSTREAM CG4365 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	13414867	2R_13414867_SNP [dm3] 2R_17527362_SNP [dm6]	T	G	3.782e^-4	0.941	INTRON Patronin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	718514	3L_718514_SNP [dm3] 3L_718514_SNP [dm6]	A	G	3.783e^-4	0.941	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6283545	3R_6283545_DEL [dm3] 3R_10457823_DEL [dm6]	GC	G	3.784e^-4	0.941	INTERGENIC
2R	14996567	2R_14996567_SNP [dm3] 2R_19109062_SNP [dm6]	T	C	3.787e^-4	0.941	SYNONYMOUS_CODING 5-HT1A
3L	5530484	3L_5530484_SNP [dm3] 3L_5537384_SNP [dm6]	T	A	3.796e^-4	0.941	INTERGENIC
3R	21372662	3R_21372662_INS [dm3] 3R_25546940_INS [dm6]	C	CC	3.797e^-4	0.941	INTRON msi
2L	702097	2L_702097_SNP [dm3] 2L_702097_SNP [dm6]	T	C	3.811e^-4	0.941	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	25566546	3R_25566546_SNP [dm3] 3R_29740824_SNP [dm6]	C	T	3.817e^-4	0.941	INTRON CG1969
3L	14813879	3L_14813879_SNP [dm3] 3L_14820779_SNP [dm6]	A	T	3.819e^-4	0.941	INTRON CG17839
2L	21900769	2L_21900769_SNP [dm3] 2L_21900769_SNP [dm6]	T	G	3.822e^-4	0.941	INTERGENIC
2L	19734033	2L_19734033_SNP [dm3] 2L_19734033_SNP [dm6]	T	A	3.828e^-4	0.941	SYNONYMOUS_CODING CG10462	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5630616	2L_5630616_SNP [dm3] 2L_5630616_SNP [dm6]	G	A	3.833e^-4	0.941	INTRON CG31646	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	2010317	X_2010317_SNP [dm3] X_2116284_SNP [dm6]	G	A	3.834e^-4	0.941	UTR_3_PRIME ph-d DOWNSTREAM csw	TF binding site mE1_TFBS_sens
3R	20342019	3R_20342019_SNP [dm3] 3R_24516297_SNP [dm6]	G	A	3.843e^-4	0.941	SYNONYMOUS_CODING CG13617	TF binding site mE1_TFBS_chinmo
2R	12116819	2R_12116819_SNP [dm3] 2R_16229314_SNP [dm6]	A	G	3.846e^-4	0.941	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16797171	2R_16797171_SNP [dm3] 2R_20909666_SNP [dm6]	C	T	3.859e^-4	0.941	UPSTREAM CG9235 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5449042	X_5449042_SNP [dm3] X_5555009_SNP [dm6]	T	A	3.861e^-4	0.941	INTRON Vsx2	TF binding site mE1_TFBS_cnc
X	14153754	X_14153754_SNP [dm3] X_14259721_SNP [dm6]	G	T	3.865e^-4	0.941	INTERGENIC
3L	21600167	3L_21600167_SNP [dm3] 3L_21607067_SNP [dm6]	G	A	3.874e^-4	0.941	INTRON TfAP-2
X	8630800	X_8630800_SNP [dm3] X_8736767_SNP [dm6]	A	G	3.875e^-4	0.941	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	14225112	3R_14225112_SNP [dm3] 3R_18399390_SNP [dm6]	A	T	3.883e^-4	0.941	UPSTREAM CG44009 & 1 other DOWNSTREAM CG12333 INTRON CG44009	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_Trl
2L	703091	2L_703091_SNP [dm3] 2L_703091_SNP [dm6]	A	T	3.887e^-4	0.941	INTRON ds	TF binding site BDTNP1_TFBS_dl
X	14511435	X_14511435_SNP [dm3] X_14617402_SNP [dm6]	A	T	3.898e^-4	0.941	INTRON NetA
2R	6016861	2R_6016861_SNP [dm3] 2R_10129356_SNP [dm6]	T	G	3.913e^-4	0.941	INTRON gem
X	12287211	X_12287211_SNP [dm3] X_12393178_SNP [dm6]	T	C	3.922e^-4	0.941	INTERGENIC
3R	14623691	3R_14623691_INS [dm3] 3R_18797969_INS [dm6]	T	TGT	3.923e^-4	0.941	INTERGENIC
3L	15700947	3L_15700947_SNP [dm3] 3L_15707847_SNP [dm6]	A	G	3.931e^-4	0.941	INTERGENIC
3R	20577104	3R_20577104_SNP [dm3] 3R_24751382_SNP [dm6]	C	T	3.960e^-4	0.941	SYNONYMOUS_CODING tld	TF binding site mE1_TFBS_cad
3R	10120898	3R_10120898_SNP [dm3] 3R_14295176_SNP [dm6]	A	G	3.975e^-4	0.941	INTRON CG12207
3R	20409339	3R_20409339_SNP [dm3] 3R_24583617_SNP [dm6]	A	G	3.979e^-4	0.941	SYNONYMOUS_CODING CG13625 UPSTREAM CG13624	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2L	18784638	2L_18784638_SNP [dm3] 2L_18784638_SNP [dm6]	A	C	3.980e^-4	0.941	INTRON ham	TF binding site BDTNP1_TFBS_dl
2L	19928107	2L_19928107_SNP [dm3] 2L_19928107_SNP [dm6]	T	C	3.980e^-4	0.941	INTRON sick
2L	703538	2L_703538_SNP [dm3] 2L_703538_SNP [dm6]	T	A	3.981e^-4	0.941	INTRON ds
3L	13637605	3L_13637605_SNP [dm3] 3L_13644505_SNP [dm6]	G	A	3.987e^-4	0.941	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	11674319	3R_11674319_SNP [dm3] 3R_15848597_SNP [dm6]	G	A	3.987e^-4	0.941	SYNONYMOUS_CODING cv-d DOWNSTREAM CG4546
2L	9574825	2L_9574825_SNP [dm3] 2L_9574825_SNP [dm6]	T	C	3.996e^-4	0.941	SYNONYMOUS_CODING Mtpalpha	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8628993	X_8628993_SNP [dm3] X_8734960_SNP [dm6]	G	A	3.998e^-4	0.941	INTERGENIC
3L	415143	3L_415143_DEL [dm3] 3L_415143_DEL [dm6]	AA	A	4.001e^-4	0.941	INTERGENIC
3R	20298814	3R_20298814_SNP [dm3] 3R_24473092_SNP [dm6]	C	T	4.002e^-4	0.941	INTERGENIC
3L	7247861	3L_7247861_SNP [dm3] 3L_7254761_SNP [dm6]	G	A	4.007e^-4	0.941	INTRON CG14830
X	5538198	X_5538198_SNP [dm3] X_5644165_SNP [dm6]	G	A	4.007e^-4	0.941	INTRON CG42492
2L	22017501	2L_22017501_SNP [dm3] 2L_22017501_SNP [dm6]	T	A	4.020e^-4	0.941	DOWNSTREAM CG31693 INTERGENIC
3R	24132562	3R_24132562_SNP [dm3] 3R_28306840_SNP [dm6]	A	T	4.021e^-4	0.941	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	8631679	3R_8631679_SNP [dm3] 3R_12805957_SNP [dm6]	A	T	4.024e^-4	0.941	INTERGENIC
3R	17396078	3R_17396078_SNP [dm3] 3R_21570356_SNP [dm6]	T	C	4.029e^-4	0.941	UTR_3_PRIME InR
X	9500317	X_9500317_SNP [dm3] X_9606284_SNP [dm6]	T	A	4.040e^-4	0.941	UPSTREAM Lst8 DOWNSTREAM Aats-lys INTERGENIC
2R	12322103	2R_12322103_SNP [dm3] 2R_16434598_SNP [dm6]	C	G	4.044e^-4	0.941	SYNONYMOUS_CODING CG7848	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5530483	3L_5530483_SNP [dm3] 3L_5537383_SNP [dm6]	A	G	4.047e^-4	0.941	INTERGENIC
3L	10691485	3L_10691485_SNP [dm3] 3L_10698385_SNP [dm6]	T	G	4.062e^-4	0.941	INTERGENIC
3L	376876	3L_376876_SNP [dm3] 3L_376876_SNP [dm6]	T	A	4.062e^-4	0.941	UTR_5_PRIME trh INTRON trh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2L	9051714	2L_9051714_DEL [dm3] 2L_9051714_DEL [dm6]	CG	C	4.063e^-4	0.941	UTR_3_PRIME CG31708
2L	6100966	2L_6100966_SNP [dm3] 2L_6100966_SNP [dm6]	C	A	4.067e^-4	0.941	INTRON stai	TF binding site BDTNP1_TFBS_dl
3L	712377	3L_712377_SNP [dm3] 3L_712377_SNP [dm6]	A	C	4.074e^-4	0.941	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	10506398	3L_10506398_SNP [dm3] 3L_10513298_SNP [dm6]	A	T	4.089e^-4	0.941	INTRON A2bp1
2R	18259221	2R_18259221_SNP [dm3] 2R_22371716_SNP [dm6]	G	T	4.090e^-4	0.941	INTRON Liprin-gamma
2L	21078649	2L_21078649_SNP [dm3] 2L_21078649_SNP [dm6]	G	A	4.097e^-4	0.941	INTRON tadr
3L	14213560	3L_14213560_SNP [dm3] 3L_14220460_SNP [dm6]	C	A	4.104e^-4	0.941	UPSTREAM nuf INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	2792696	X_2792696_INS [dm3] X_2898663_INS [dm6]	T	TAT	4.113e^-4	0.941	INTRON kirre
X	3172019	X_3172019_SNP [dm3] X_3277986_SNP [dm6]	A	T	4.116e^-4	0.941	INTRON dnc
2L	19735425	2L_19735425_SNP [dm3] 2L_19735425_SNP [dm6]	G	A	4.117e^-4	0.941	UPSTREAM Nf-YB INTRON CG10462	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19204166	2L_19204166_DEL [dm3] 2L_19204166_DEL [dm6]	TCGT	T	4.122e^-4	0.941	INTRON drl	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2L	19193029	2L_19193029_SNP [dm3] 2L_19193029_SNP [dm6]	C	T	4.145e^-4	0.941	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19096857	X_19096857_SNP [dm3] X_19202824_SNP [dm6]	A	T	4.157e^-4	0.941	UTR_3_PRIME Ulp1 UPSTREAM CG7990
2L	21921535	2L_21921535_SNP [dm3] 2L_21921535_SNP [dm6]	T	C	4.161e^-4	0.941	INTERGENIC
3L	13993525	3L_13993525_SNP [dm3] 3L_14000425_SNP [dm6]	G	A	4.176e^-4	0.941	SYNONYMOUS_CODING CG8783	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4759708	3L_4759708_SNP [dm3] 3L_4759708_SNP [dm6]	G	A	4.185e^-4	0.941	DOWNSTREAM CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16202334	3L_16202334_SNP [dm3] 3L_16209234_SNP [dm6]	A	T	4.194e^-4	0.941	INTERGENIC	TF binding site mE1_TFBS_cad
3R	25576909	3R_25576909_SNP [dm3] 3R_29751187_SNP [dm6]	T	C	4.210e^-4	0.941	SYNONYMOUS_CODING yata	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16256687	3R_16256687_SNP [dm3] 3R_20430965_SNP [dm6]	T	G	4.213e^-4	0.941	INTRON Gfrl
3L	1604651	3L_1604651_SNP [dm3] 3L_1604651_SNP [dm6]	C	T	4.215e^-4	0.941	UTR_5_PRIME CG33791 UTR_3_PRIME CG18170 UPSTREAM CG33791
3R	22226623	3R_22226623_SNP [dm3] 3R_26400901_SNP [dm6]	A	G	4.219e^-4	0.941	INTERGENIC
2L	19735240	2L_19735240_SNP [dm3] 2L_19735240_SNP [dm6]	G	C	4.229e^-4	0.941	UPSTREAM Nf-YB INTRON CG10462	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5895628	3R_5895628_SNP [dm3] 3R_10069906_SNP [dm6]	C	T	4.231e^-4	0.941	INTERGENIC
3L	2578884	3L_2578884_SNP [dm3] 3L_2578884_SNP [dm6]	T	G	4.236e^-4	0.941	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	2578889	3L_2578889_SNP [dm3] 3L_2578889_SNP [dm6]	T	A	4.236e^-4	0.941	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	10553021	3R_10553021_SNP [dm3] 3R_14727299_SNP [dm6]	A	G	4.240e^-4	0.941	NON_SYNONYMOUS_CODING CG7530
3R	5895860	3R_5895860_SNP [dm3] 3R_10070138_SNP [dm6]	C	G	4.241e^-4	0.941	UPSTREAM nerfin-2 INTERGENIC
2L	20404418	2L_20404418_SNP [dm3] 2L_20404418_SNP [dm6]	G	A	4.244e^-4	0.941	INTRON CG10947
3R	5921326	3R_5921326_SNP [dm3] 3R_10095604_SNP [dm6]	G	A	4.248e^-4	0.941	DOWNSTREAM CR43459 EXON CR43459
3R	16899060	3R_16899060_DEL [dm3] 3R_21073338_DEL [dm6]	TGT	T	4.251e^-4	0.941	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad
2L	4290523	2L_4290523_SNP [dm3] 2L_4290523_SNP [dm6]	C	T	4.257e^-4	0.941	INTRON tutl
3L	14341582	3L_14341582_SNP [dm3] 3L_14348482_SNP [dm6]	A	G	4.273e^-4	0.941	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9814243	X_9814243_SNP [dm3] X_9920210_SNP [dm6]	C	G	4.287e^-4	0.941	INTERGENIC
2L	22322677	2L_22322677_SNP [dm3] 2L_22322677_SNP [dm6]	G	A	4.289e^-4	0.941	INTRON CG17018
X	21947315	X_21947315_MNP [dm3] X_22545479_MNP [dm6]	TAA	AGG	4.294e^-4	0.941	INTERGENIC	transposable element FlyBase
2R	12322121	2R_12322121_SNP [dm3] 2R_16434616_SNP [dm6]	A	G	4.295e^-4	0.941	SYNONYMOUS_CODING CG7848	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25125888	3R_25125888_SNP [dm3] 3R_29300166_SNP [dm6]	C	A	4.298e^-4	0.941	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
X	3924008	X_3924008_SNP [dm3] X_4029975_SNP [dm6]	C	T	4.310e^-4	0.941	INTERGENIC
2L	20295924	2L_20295924_SNP [dm3] 2L_20295924_SNP [dm6]	C	T	4.317e^-4	0.941	DOWNSTREAM CG12617 & 1 other INTERGENIC
2R	12322094	2R_12322094_SNP [dm3] 2R_16434589_SNP [dm6]	A	G	4.324e^-4	0.941	SYNONYMOUS_CODING CG7848	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	9515311	2L_9515311_SNP [dm3] 2L_9515311_SNP [dm6]	T	C	4.326e^-4	0.941	SPLICE_SITE_REGION CG33298 INTRON CG33298
3L	7894419	3L_7894419_SNP [dm3] 3L_7901319_SNP [dm6]	T	C	4.330e^-4	0.941	SYNONYMOUS_CODING pbl INTRON pbl
3L	1604648	3L_1604648_SNP [dm3] 3L_1604648_SNP [dm6]	A	G	4.332e^-4	0.941	UTR_5_PRIME CG33791 UTR_3_PRIME CG18170 UPSTREAM CG33791
3L	1866893	3L_1866893_SNP [dm3] 3L_1866893_SNP [dm6]	T	G	4.337e^-4	0.941	INTRON CG12025	TF binding site BDTNP1_TFBS_twi
3L	20875894	3L_20875894_SNP [dm3] 3L_20882794_SNP [dm6]	T	C	4.346e^-4	0.941	INTRON CG32432
2L	3558905	2L_3558905_SNP [dm3] 2L_3558905_SNP [dm6]	C	A	4.347e^-4	0.941	INTERGENIC
3R	9771451	3R_9771451_SNP [dm3] 3R_13945729_SNP [dm6]	G	T	4.348e^-4	0.941	NON_SYNONYMOUS_CODING Art6
X	20397440	X_20397440_SNP [dm3] X_20526413_SNP [dm6]	A	T	4.361e^-4	0.941	INTERGENIC
X	20273028	X_20273028_SNP [dm3] X_20402001_SNP [dm6]	A	G	4.367e^-4	0.941	SYNONYMOUS_CODING HERC2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13399303	2L_13399303_SNP [dm3] 2L_13399303_SNP [dm6]	C	A	4.369e^-4	0.941	SYNONYMOUS_CODING CG7110 UPSTREAM CG10859 EXON CR44600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
X	19021094	X_19021094_SNP [dm3] X_19127061_SNP [dm6]	G	A	4.373e^-4	0.941	NON_SYNONYMOUS_CODING tgy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7738089	3L_7738089_SNP [dm3] 3L_7744989_SNP [dm6]	G	C	4.374e^-4	0.941	INTRON CG32373
2R	18867119	2R_18867119_SNP [dm3] 2R_22979596_SNP [dm6]	T	G	4.376e^-4	0.941	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	18154617	3L_18154617_INS [dm3] 3L_18161517_INS [dm6]	A	AG	4.377e^-4	0.941	INTRON CG13699
X	13998264	X_13998264_SNP [dm3] X_14104231_SNP [dm6]	C	G	4.384e^-4	0.941	UPSTREAM tRNA:S4:12Ee & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	21079217	2L_21079217_SNP [dm3] 2L_21079217_SNP [dm6]	C	A	4.395e^-4	0.941	INTRON tadr
3L	8814919	3L_8814919_SNP [dm3] 3L_8821819_SNP [dm6]	T	A	4.396e^-4	0.941	INTERGENIC
3R	24847183	3R_24847183_SNP [dm3] 3R_29021461_SNP [dm6]	A	T	4.398e^-4	0.941	EXON CR44264
2L	16992634	2L_16992634_SNP [dm3] 2L_16992634_SNP [dm6]	T	C	4.401e^-4	0.941	INTRON beat-IIIb
3L	7441882	3L_7441882_SNP [dm3] 3L_7448782_SNP [dm6]	T	G	4.403e^-4	0.941	INTRON CG42458
2L	13211544	2L_13211544_SNP [dm3] 2L_13211544_SNP [dm6]	T	C	4.406e^-4	0.941	NON_SYNONYMOUS_CODING CG15482 DOWNSTREAM Pect & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21098345	2L_21098345_SNP [dm3] 2L_21098345_SNP [dm6]	T	G	4.407e^-4	0.941	INTRON CG12050 & 1 other
3L	14389499	3L_14389499_SNP [dm3] 3L_14396399_SNP [dm6]	T	A	4.408e^-4	0.941	INTERGENIC
X	14149584	X_14149584_SNP [dm3] X_14255551_SNP [dm6]	A	C	4.410e^-4	0.941	SYNONYMOUS_CODING mud DOWNSTREAM mud INTRON mud	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11252598	3L_11252598_DEL [dm3] 3L_11259498_DEL [dm6]	TT	T	4.412e^-4	0.941	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3880428	2L_3880428_SNP [dm3] 2L_3880428_SNP [dm6]	A	G	4.422e^-4	0.941	UPSTREAM capu INTRON capu
2R	16248235	2R_16248235_SNP [dm3] 2R_20360730_SNP [dm6]	C	G	4.423e^-4	0.941	INTERGENIC
3R	16780291	3R_16780291_SNP [dm3] 3R_20954569_SNP [dm6]	C	G	4.428e^-4	0.941	INTRON Atpalpha
3L	1740428	3L_1740428_SNP [dm3] 3L_1740428_SNP [dm6]	A	G	4.429e^-4	0.941	INTRON Gk
2L	9752107	2L_9752107_SNP [dm3] 2L_9752107_SNP [dm6]	C	A	4.434e^-4	0.941	INTERGENIC
3R	20433862	3R_20433862_SNP [dm3] 3R_24608140_SNP [dm6]	G	A	4.467e^-4	0.941	INTRON mld
3L	3473943	3L_3473943_SNP [dm3] 3L_3473943_SNP [dm6]	A	T	4.471e^-4	0.941	INTRON CG42324
3L	712226	3L_712226_SNP [dm3] 3L_712226_SNP [dm6]	C	A	4.472e^-4	0.941	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	14398267	3L_14398267_SNP [dm3] 3L_14405167_SNP [dm6]	A	G	4.473e^-4	0.941	NON_SYNONYMOUS_CODING stwl	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11674316	3R_11674316_SNP [dm3] 3R_15848594_SNP [dm6]	G	A	4.475e^-4	0.941	SYNONYMOUS_CODING cv-d DOWNSTREAM CG4546
2L	13399279	2L_13399279_SNP [dm3] 2L_13399279_SNP [dm6]	G	C	4.476e^-4	0.941	SYNONYMOUS_CODING CG7110 UPSTREAM CG10859 EXON CR44600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
X	12158909	X_12158909_SNP [dm3] X_12264876_SNP [dm6]	C	G	4.491e^-4	0.941	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15895215	2R_15895215_SNP [dm3] 2R_20007710_SNP [dm6]	T	C	4.491e^-4	0.941	DOWNSTREAM CR44628 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	14368783	3R_14368783_SNP [dm3] 3R_18543061_SNP [dm6]	A	G	4.502e^-4	0.941	INTRON fru
3R	19742306	3R_19742306_SNP [dm3] 3R_23916584_SNP [dm6]	A	G	4.508e^-4	0.941	INTRON sba
3L	15585993	3L_15585993_SNP [dm3] 3L_15592893_SNP [dm6]	C	G	4.509e^-4	0.941	INTRON RhoGAP71E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15839197	2R_15839197_SNP [dm3] 2R_19951692_SNP [dm6]	G	A	4.510e^-4	0.941	SYNONYMOUS_CODING CG10822
2L	11013826	2L_11013826_SNP [dm3] 2L_11013826_SNP [dm6]	G	C	4.516e^-4	0.941	UTR_3_PRIME Samuel	TF binding site mE1_TFBS_cad
3L	20877017	3L_20877017_SNP [dm3] 3L_20883917_SNP [dm6]	A	C	4.520e^-4	0.941	INTRON CG32432
X	5538195	X_5538195_SNP [dm3] X_5644162_SNP [dm6]	A	G	4.524e^-4	0.941	INTRON CG42492
3L	2578908	3L_2578908_SNP [dm3] 3L_2578908_SNP [dm6]	G	A	4.530e^-4	0.941	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	9501583	X_9501583_SNP [dm3] X_9607550_SNP [dm6]	A	G	4.531e^-4	0.941	SYNONYMOUS_CODING Aats-lys	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24456060	3R_24456060_SNP [dm3] 3R_28630338_SNP [dm6]	T	C	4.533e^-4	0.941	INTRON CG10011	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	7100403	2L_7100403_SNP [dm3] 2L_7100403_SNP [dm6]	G	A	4.535e^-4	0.941	SYNONYMOUS_CODING Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	10695813	3L_10695813_SNP [dm3] 3L_10702713_SNP [dm6]	T	A	4.548e^-4	0.941	INTERGENIC
2R	17920187	2R_17920187_SNP [dm3] 2R_22032682_SNP [dm6]	G	T	4.549e^-4	0.941	INTRON CG34370
3L	1693699	3L_1693699_SNP [dm3] 3L_1693699_SNP [dm6]	A	G	4.551e^-4	0.941	UPSTREAM CG12011 INTRON CG7991
3L	20818545	3L_20818545_SNP [dm3] 3L_20825445_SNP [dm6]	C	A	4.554e^-4	0.941	UPSTREAM Pka-R1 INTRON Pka-R1
3R	5904810	3R_5904810_INS [dm3] 3R_10079088_INS [dm6]	A	ACGGAA	4.559e^-4	0.941	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16565159	2L_16565159_SNP [dm3] 2L_16565159_SNP [dm6]	C	A	4.560e^-4	0.941	INTRON CG42389
2L	9574804	2L_9574804_SNP [dm3] 2L_9574804_SNP [dm6]	A	C	4.570e^-4	0.941	SYNONYMOUS_CODING Mtpalpha	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10925565	2R_10925565_SNP [dm3] 2R_15038060_SNP [dm6]	T	A	4.573e^-4	0.941	SYNONYMOUS_CODING hbs
2L	21795611	2L_21795611_SNP [dm3] 2L_21795611_SNP [dm6]	C	G	4.574e^-4	0.941	UPSTREAM CG31612 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
3L	18641597	3L_18641597_DEL [dm3] 3L_18648497_DEL [dm6]	AACACA	GGGTT	4.588e^-4	0.941	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	22144346	2L_22144346_INS [dm3] 2L_22144346_INS [dm6]	G	GCTGTG	4.596e^-4	0.941	INTRON CG42748	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	7124185	2L_7124185_DEL [dm3] 2L_7124185_DEL [dm6]	CC	C	4.598e^-4	0.941	INTRON Pvf3
3L	13646936	3L_13646936_SNP [dm3] 3L_13653836_SNP [dm6]	T	C	4.600e^-4	0.941	INTRON bru-3
X	20270810	X_20270810_SNP [dm3] X_20399783_SNP [dm6]	C	T	4.601e^-4	0.941	SYNONYMOUS_CODING HERC2	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
X	20264927	X_20264927_SNP [dm3] X_20393900_SNP [dm6]	C	T	4.609e^-4	0.941	UPSTREAM HERC2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	20268885	X_20268885_DEL [dm3] X_20397858_DEL [dm6]	TT	T	4.609e^-4	0.941	INTRON HERC2	transposable element FlyBase
X	20268894	X_20268894_DEL [dm3] X_20397867_DEL [dm6]	CGATGTCTATATTGCGCTTA...	C	4.609e^-4	0.941	INTRON HERC2	transposable element FlyBase
2L	22181571	2L_22181571_SNP [dm3] 2L_22181571_SNP [dm6]	C	A	4.619e^-4	0.941	INTRON CG3635
2L	13106816	2L_13106816_SNP [dm3] 2L_13106816_SNP [dm6]	A	G	4.621e^-4	0.941	UTR_5_PRIME CG5142 UPSTREAM CG5142
X	9814412	X_9814412_SNP [dm3] X_9920379_SNP [dm6]	T	G	4.621e^-4	0.941	INTERGENIC
2L	1312145	2L_1312145_SNP [dm3] 2L_1312145_SNP [dm6]	C	T	4.627e^-4	0.941	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	5088667	2L_5088667_SNP [dm3] 2L_5088667_SNP [dm6]	C	T	4.630e^-4	0.941	INTRON pgant5
3L	11922572	3L_11922572_SNP [dm3] 3L_11929472_SNP [dm6]	G	A	4.633e^-4	0.941	INTRON CG44837 & 1 other
3L	14388981	3L_14388981_SNP [dm3] 3L_14395881_SNP [dm6]	A	T	4.642e^-4	0.941	INTERGENIC
2L	19204078	2L_19204078_SNP [dm3] 2L_19204078_SNP [dm6]	A	G	4.649e^-4	0.941	INTRON drl	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_sens
3L	18641613	3L_18641613_SNP [dm3] 3L_18648513_SNP [dm6]	A	T	4.652e^-4	0.941	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20156719	X_20156719_SNP [dm3] X_20285692_SNP [dm6]	G	A	4.654e^-4	0.941	INTERGENIC
2L	19161802	2L_19161802_SNP [dm3] 2L_19161802_SNP [dm6]	C	A	4.662e^-4	0.941	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	10910963	3R_10910963_SNP [dm3] 3R_15085241_SNP [dm6]	G	A	4.663e^-4	0.941	INTRON CG6966
3L	15585964	3L_15585964_SNP [dm3] 3L_15592864_SNP [dm6]	C	T	4.666e^-4	0.941	INTRON RhoGAP71E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4856926	X_4856926_SNP [dm3] X_4962893_SNP [dm6]	A	T	4.669e^-4	0.941	INTRON CR44833
3L	14389434	3L_14389434_SNP [dm3] 3L_14396334_SNP [dm6]	T	C	4.675e^-4	0.941	INTERGENIC
3L	381120	3L_381120_SNP [dm3] 3L_381120_SNP [dm6]	T	A	4.684e^-4	0.941	INTRON trh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	837029	3L_837029_SNP [dm3] 3L_837029_SNP [dm6]	A	G	4.686e^-4	0.941	SYNONYMOUS_CODING CG13901 UPSTREAM CG13887 DOWNSTREAM CG42554	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
3L	12571398	3L_12571398_SNP [dm3] 3L_12578298_SNP [dm6]	T	C	4.692e^-4	0.941	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	15150055	3R_15150055_SNP [dm3] 3R_19324333_SNP [dm6]	G	A	4.694e^-4	0.941	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12576105	2R_12576105_SNP [dm3] 2R_16688600_SNP [dm6]	T	A	4.705e^-4	0.941	INTRON CG30463
2L	22322762	2L_22322762_SNP [dm3] 2L_22322762_SNP [dm6]	G	T	4.705e^-4	0.941	INTRON CG17018
X	12158624	X_12158624_SNP [dm3] X_12264591_SNP [dm6]	G	C	4.709e^-4	0.941	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9655971	3L_9655971_SNP [dm3] 3L_9662871_SNP [dm6]	C	T	4.726e^-4	0.941	INTRON fry
2L	14850585	2L_14850585_SNP [dm3] 2L_14850585_SNP [dm6]	G	C	4.734e^-4	0.941	INTRON CG15279
2L	22091004	2L_22091004_SNP [dm3] 2L_22091004_SNP [dm6]	A	T	4.745e^-4	0.941	INTERGENIC	transposable element FlyBase
2R	14517144	2R_14517144_INS [dm3] 2R_18629639_INS [dm6]	A	AG	4.746e^-4	0.941	UTR_3_PRIME CG5482 DOWNSTREAM CG5482 & 1 other	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	23285396	3R_23285396_SNP [dm3] 3R_27459674_SNP [dm6]	A	C	4.749e^-4	0.941	INTERGENIC
3R	4686158	3R_4686158_SNP [dm3] 3R_8860436_SNP [dm6]	A	G	4.749e^-4	0.941	INTRON pyd
2L	8669539	2L_8669539_INS [dm3] 2L_8669539_INS [dm6]	T	TT	4.756e^-4	0.941	UTR_3_PRIME Sema-1a
X	9814413	X_9814413_DEL [dm3] X_9920380_DEL [dm6]	CTTCA	C	4.756e^-4	0.941	INTERGENIC
3R	20479330	3R_20479330_SNP [dm3] 3R_24653608_SNP [dm6]	G	A	4.758e^-4	0.941	NON_SYNONYMOUS_CODING CG31125 DOWNSTREAM ash2	TF binding site mE1_TFBS_chinmo
3L	17474591	3L_17474591_INS [dm3] 3L_17481491_INS [dm6]	T	TTTTCCCACTTTATTCCGT...	4.766e^-4	0.941	UTR_5_PRIME CG6333
3L	10604687	3L_10604687_SNP [dm3] 3L_10611587_SNP [dm6]	G	A	4.770e^-4	0.941	INTERGENIC
3R	20995023	3R_20995023_SNP [dm3] 3R_25169301_SNP [dm6]	C	G	4.774e^-4	0.941	DOWNSTREAM lobo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12458685	3L_12458685_SNP [dm3] 3L_12465585_SNP [dm6]	A	T	4.777e^-4	0.941	INTRON eyg	TF binding site mE1_TFBS_chinmo
2L	13466047	2L_13466047_SNP [dm3] 2L_13466047_SNP [dm6]	A	G	4.777e^-4	0.941	INTRON CG42784
2L	7921435	2L_7921435_SNP [dm3] 2L_7921435_SNP [dm6]	C	A	4.804e^-4	0.941	INTRON Snoo
2R	12116981	2R_12116981_SNP [dm3] 2R_16229476_SNP [dm6]	C	T	4.809e^-4	0.941	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	4.809e^-4	0.941	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	18913493	X_18913493_SNP [dm3] X_19019460_SNP [dm6]	G	A	4.826e^-4	0.941	INTRON CG43759
2L	19181119	2L_19181119_SNP [dm3] 2L_19181119_SNP [dm6]	T	C	4.832e^-4	0.941	NON_SYNONYMOUS_CODING CG17568 DOWNSTREAM CG42688	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5530465	3L_5530465_SNP [dm3] 3L_5537365_SNP [dm6]	A	T	4.834e^-4	0.941	INTERGENIC
3L	5530467	3L_5530467_SNP [dm3] 3L_5537367_SNP [dm6]	G	A	4.834e^-4	0.941	INTERGENIC
X	17948777	X_17948777_SNP [dm3] X_18054744_SNP [dm6]	G	A	4.853e^-4	0.941	INTRON Sh
3L	16202321	3L_16202321_SNP [dm3] 3L_16209221_SNP [dm6]	G	T	4.854e^-4	0.941	INTERGENIC	TF binding site mE1_TFBS_cad
2L	8643488	2L_8643488_SNP [dm3] 2L_8643488_SNP [dm6]	A	T	4.857e^-4	0.941	INTRON Sema-1a
2R	11745379	2R_11745379_SNP [dm3] 2R_15857874_SNP [dm6]	T	A	4.860e^-4	0.941	UTR_3_PRIME Gpo-1 DOWNSTREAM CG12970
2L	19239757	2L_19239757_SNP [dm3] 2L_19239757_SNP [dm6]	G	T	4.863e^-4	0.941	INTERGENIC
3L	9651476	3L_9651476_SNP [dm3] 3L_9658376_SNP [dm6]	T	G	4.865e^-4	0.941	INTRON fry & 1 other	TF binding site mE1_TFBS_inv
3L	9651491	3L_9651491_SNP [dm3] 3L_9658391_SNP [dm6]	G	A	4.890e^-4	0.941	INTRON fry & 1 other	TF binding site mE1_TFBS_inv
2L	20437870	2L_20437870_SNP [dm3] 2L_20437870_SNP [dm6]	A	T	4.897e^-4	0.941	UPSTREAM CR43607 INTRON CG31688 & 1 other
3L	4759650	3L_4759650_SNP [dm3] 3L_4759650_SNP [dm6]	C	T	4.899e^-4	0.941	DOWNSTREAM CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26927114	3R_26927114_SNP [dm3] 3R_31101392_SNP [dm6]	T	G	4.906e^-4	0.941	UPSTREAM CG15553 INTERGENIC
3L	14385307	3L_14385307_SNP [dm3] 3L_14392207_SNP [dm6]	A	G	4.910e^-4	0.941	INTERGENIC
3L	12223152	3L_12223152_SNP [dm3] 3L_12230052_SNP [dm6]	A	T	4.915e^-4	0.941	INTRON app
2L	15365250	2L_15365250_SNP [dm3] 2L_15365250_SNP [dm6]	C	T	4.915e^-4	0.941	INTERGENIC
3L	14389265	3L_14389265_SNP [dm3] 3L_14396165_SNP [dm6]	T	A	4.916e^-4	0.941	INTERGENIC
3L	4841144	3L_4841144_SNP [dm3] 3L_4841144_SNP [dm6]	C	T	4.917e^-4	0.941	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	15069784	2R_15069784_SNP [dm3] 2R_19182279_SNP [dm6]	C	T	4.920e^-4	0.941	INTRON hppy
3R	10899715	3R_10899715_SNP [dm3] 3R_15073993_SNP [dm6]	T	C	4.928e^-4	0.941	INTRON dpr9
3L	20873831	3L_20873831_SNP [dm3] 3L_20880731_SNP [dm6]	A	G	4.928e^-4	0.941	INTRON CG32432
2L	17601381	2L_17601381_SNP [dm3] 2L_17601381_SNP [dm6]	A	T	4.935e^-4	0.941	INTRON Sytalpha
3R	24718588	3R_24718588_SNP [dm3] 3R_28892866_SNP [dm6]	T	G	4.936e^-4	0.941	INTRON Doa
X	19273102	X_19273102_SNP [dm3] X_19379069_SNP [dm6]	A	C	4.937e^-4	0.941	INTRON kek5
2L	19941325	2L_19941325_SNP [dm3] 2L_19941325_SNP [dm6]	C	T	4.942e^-4	0.941	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
X	5817626	X_5817626_SNP [dm3] X_5923593_SNP [dm6]	C	T	4.946e^-4	0.941	INTRON CG3726
2L	17490524	2L_17490524_SNP [dm3] 2L_17490524_SNP [dm6]	C	A	4.949e^-4	0.941	INTRON qua
X	2002356	X_2002356_SNP [dm3] X_2108323_SNP [dm6]	C	A	4.951e^-4	0.941	INTRON csw
3L	20780549	3L_20780549_SNP [dm3] 3L_20787449_SNP [dm6]	A	G	4.956e^-4	0.941	SYNONYMOUS_CODING CG11396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	20018357	2L_20018357_DEL [dm3] 2L_20018357_DEL [dm6]	TCTAT	T	4.964e^-4	0.941	INTERGENIC
X	8303129	X_8303129_SNP [dm3] X_8409096_SNP [dm6]	G	A	4.968e^-4	0.941	UTR_3_PRIME lawc UPSTREAM Trf2 INTRON lawc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	3972263	2R_3972263_SNP [dm3] 2R_8084758_SNP [dm6]	C	A	4.968e^-4	0.941	NON_SYNONYMOUS_CODING sut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18154625	3L_18154625_SNP [dm3] 3L_18161525_SNP [dm6]	G	A	4.974e^-4	0.941	INTRON CG13699
3R	8477135	3R_8477135_SNP [dm3] 3R_12651413_SNP [dm6]	A	G	4.982e^-4	0.941	SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_sens
X	5110498	X_5110498_SNP [dm3] X_5216465_SNP [dm6]	G	A	4.987e^-4	0.941	INTRON CG15465 & 1 other
3L	14814995	3L_14814995_SNP [dm3] 3L_14821895_SNP [dm6]	G	T	4.988e^-4	0.941	INTRON CG17839
2R	17692229	2R_17692229_SNP [dm3] 2R_21804724_SNP [dm6]	C	G	4.989e^-4	0.941	DOWNSTREAM CR9284 INTERGENIC
2R	12586585	2R_12586585_SNP [dm3] 2R_16699080_SNP [dm6]	A	G	4.990e^-4	0.941	SYNONYMOUS_CODING CG30463
3R	10689491	3R_10689491_INS [dm3] 3R_14863769_INS [dm6]	A	AAAACACA	5.001e^-4	0.941	INTRON btsz
2L	702204	2L_702204_SNP [dm3] 2L_702204_SNP [dm6]	T	C	5.007e^-4	0.941	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3L	10733914	3L_10733914_SNP [dm3] 3L_10740814_SNP [dm6]	T	G	5.015e^-4	0.941	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	22269213	X_22269213_INS [dm3] X_22867377_INS [dm6]	T	TATGTATGTAT...	5.019e^-4	0.941	INTRON CG42346	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	6520784	2L_6520784_SNP [dm3] 2L_6520784_SNP [dm6]	A	T	5.022e^-4	0.941	INTRON CG31637
3L	14389490	3L_14389490_SNP [dm3] 3L_14396390_SNP [dm6]	A	T	5.026e^-4	0.941	INTERGENIC
2L	13399150	2L_13399150_SNP [dm3] 2L_13399150_SNP [dm6]	A	G	5.026e^-4	0.941	UPSTREAM CG10859 INTRON CG7110 EXON CR44600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_ttk
2L	13399158	2L_13399158_SNP [dm3] 2L_13399158_SNP [dm6]	C	T	5.026e^-4	0.941	UPSTREAM CG10859 INTRON CG7110 EXON CR44600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_ttk
3R	22519992	3R_22519992_SNP [dm3] 3R_26694270_SNP [dm6]	A	G	5.032e^-4	0.941	UPSTREAM TwdlQ INTERGENIC
2R	13551970	2R_13551970_SNP [dm3] 2R_17664465_SNP [dm6]	C	A	5.033e^-4	0.941	INTRON CCHa1-R
2L	7337049	2L_7337049_DEL [dm3] 2L_7337049_DEL [dm6]	TT	T	5.034e^-4	0.941	INTRON Wnt6
2L	12723376	2L_12723376_SNP [dm3] 2L_12723376_SNP [dm6]	T	C	5.035e^-4	0.941	NON_SYNONYMOUS_CODING MRP	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_sens
2R	17535955	2R_17535955_SNP [dm3] 2R_21648450_SNP [dm6]	T	G	5.039e^-4	0.941	INTRON CG10082	TF binding site mE1_TFBS_HSA
2L	414406	2L_414406_SNP [dm3] 2L_414406_SNP [dm6]	T	A	5.049e^-4	0.941	UPSTREAM ebi INTRON AP-2alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	21946848	X_21946848_SNP [dm3] X_22545012_SNP [dm6]	G	A	5.063e^-4	0.941	UPSTREAM CG17599 INTERGENIC
X	2003548	X_2003548_SNP [dm3] X_2109515_SNP [dm6]	A	G	5.073e^-4	0.941	SYNONYMOUS_CODING csw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	607212	3L_607212_SNP [dm3] 3L_607212_SNP [dm6]	A	T	5.085e^-4	0.941	UPSTREAM Reg-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	9441548	X_9441548_SNP [dm3] X_9547515_SNP [dm6]	T	G	5.094e^-4	0.941	INTRON CG32700
X	8611860	X_8611860_SNP [dm3] X_8717827_SNP [dm6]	G	A	5.099e^-4	0.941	SYNONYMOUS_CODING l_1_G0020 DOWNSTREAM CG1785	TF binding site mE1_TFBS_HSA
3L	10204476	3L_10204476_SNP [dm3] 3L_10211376_SNP [dm6]	A	T	5.100e^-4	0.941	INTERGENIC
3R	24726663	3R_24726663_SNP [dm3] 3R_28900941_SNP [dm6]	T	C	5.100e^-4	0.941	SYNONYMOUS_CODING Doa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14768964	X_14768964_SNP [dm3] X_14874931_SNP [dm6]	T	C	5.101e^-4	0.941	DOWNSTREAM CG45065 & 1 other INTRON Flo2
3R	26000358	3R_26000358_SNP [dm3] 3R_30174636_SNP [dm6]	C	T	5.113e^-4	0.941	UPSTREAM Mlc2 INTERGENIC	regulatory region REDfly_CRMs
X	2824270	X_2824270_SNP [dm3] X_2930237_SNP [dm6]	C	G	5.116e^-4	0.941	NON_SYNONYMOUS_CODING CG32793 INTRON kirre	TF binding site mE1_TFBS_chinmo
3L	9092136	3L_9092136_SNP [dm3] 3L_9099036_SNP [dm6]	A	G	5.124e^-4	0.941	UTR_3_PRIME bol
2L	7337056	2L_7337056_DEL [dm3] 2L_7337056_DEL [dm6]	GGGTCCGGAAATAGCGAAAA...	T	5.137e^-4	0.941	INTRON Wnt6
3L	2993082	3L_2993082_SNP [dm3] 3L_2993082_SNP [dm6]	G	T	5.138e^-4	0.941	INTERGENIC
2L	2923931	2L_2923931_SNP [dm3] 2L_2923931_SNP [dm6]	C	G	5.150e^-4	0.941	INTRON lilli
2L	7716657	2L_7716657_SNP [dm3] 2L_7716657_SNP [dm6]	A	T	5.154e^-4	0.941	UPSTREAM CG33296 DOWNSTREAM CG13793 INTERGENIC
2L	18656982	2L_18656982_SNP [dm3] 2L_18656982_SNP [dm6]	A	C	5.159e^-4	0.941	INTRON MESR3

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.801e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.04159
In_3R_Mo	0.08845

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	6.6285	0.0364
In_3R_Mo	5.0085	0.0817

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1699 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	1.073e^-6	0.839	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
2L	13399308	2L_13399308_SNP [dm3] 2L_13399308_SNP [dm6]	T	C	1.482e^-6	0.839	NON_SYNONYMOUS_CODING CG7110 UPSTREAM CG10859 EXON CR44600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3L	10756244	3L_10756244_SNP [dm3] 3L_10763144_SNP [dm6]	A	G	3.174e^-6	0.839	INTERGENIC
X	3172280	X_3172280_SNP [dm3] X_3278247_SNP [dm6]	T	G	3.436e^-6	0.839	INTRON dnc
2R	15841021	2R_15841021_SNP [dm3] 2R_19953516_SNP [dm6]	C	T	5.250e^-6	0.839	UPSTREAM CG44622 INTERGENIC
2R	17920188	2R_17920188_DEL [dm3] 2R_22032683_DEL [dm6]	GGGCTGG	G	5.355e^-6	0.839	INTRON CG34370
2R	15838900	2R_15838900_SNP [dm3] 2R_19951395_SNP [dm6]	C	T	5.377e^-6	0.839	UTR_5_PRIME CG10822
2L	5548115	2L_5548115_SNP [dm3] 2L_5548115_SNP [dm6]	C	T	5.579e^-6	0.839	INTRON Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	16289150	2R_16289150_SNP [dm3] 2R_20401645_SNP [dm6]	G	A	6.178e^-6	0.839	INTERGENIC
2L	5543816	2L_5543816_SNP [dm3] 2L_5543816_SNP [dm6]	C	T	6.217e^-6	0.839	INTRON Lam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	5544154	2L_5544154_SNP [dm3] 2L_5544154_SNP [dm6]	A	C	6.339e^-6	0.839	SYNONYMOUS_CODING Lam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7887500	3L_7887500_SNP [dm3] 3L_7894400_SNP [dm6]	C	T	7.160e^-6	0.839	NON_SYNONYMOUS_CODING CG32365 UPSTREAM eIF4E-5	TF binding site mE1_TFBS_cad
2R	15838903	2R_15838903_SNP [dm3] 2R_19951398_SNP [dm6]	A	C	7.436e^-6	0.839	UTR_5_PRIME CG10822
2R	15838896	2R_15838896_SNP [dm3] 2R_19951391_SNP [dm6]	C	T	8.038e^-6	0.839	START_GAINED CG10822 UTR_5_PRIME CG10822
2L	539849	2L_539849_SNP [dm3] 2L_539849_SNP [dm6]	C	T	8.785e^-6	0.839	NON_SYNONYMOUS_CODING ush DOWNSTREAM lwr	TF binding site mE1_TFBS_cad
2R	10925565	2R_10925565_SNP [dm3] 2R_15038060_SNP [dm6]	T	A	9.205e^-6	0.839	SYNONYMOUS_CODING hbs
3L	7887433	3L_7887433_SNP [dm3] 3L_7894333_SNP [dm6]	A	G	9.244e^-6	0.839	NON_SYNONYMOUS_CODING CG32365 UPSTREAM eIF4E-5	TF binding site mE1_TFBS_cad
2R	15841000	2R_15841000_SNP [dm3] 2R_19953495_SNP [dm6]	G	A	9.824e^-6	0.839	UPSTREAM CG44622 INTERGENIC
X	12264143	X_12264143_SNP [dm3] X_12370110_SNP [dm6]	C	A	1.039e^-5	0.839	INTERGENIC
3L	14817116	3L_14817116_SNP [dm3] 3L_14824016_SNP [dm6]	A	T	1.097e^-5	0.839	INTRON CG17839
3L	7887451	3L_7887451_SNP [dm3] 3L_7894351_SNP [dm6]	C	G	1.176e^-5	0.839	NON_SYNONYMOUS_CODING CG32365 UPSTREAM eIF4E-5	TF binding site mE1_TFBS_cad
X	16685557	X_16685557_SNP [dm3] X_16791524_SNP [dm6]	T	A	1.205e^-5	0.839	UPSTREAM CG4768 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	16983394	3L_16983394_SNP [dm3] 3L_16990294_SNP [dm6]	C	A	1.226e^-5	0.839	INTRON Exn
3L	16983298	3L_16983298_INS [dm3] 3L_16990198_INS [dm6]	A	AG	1.233e^-5	0.839	INTRON Exn
2R	19533244	2R_19533244_SNP [dm3] 2R_23645721_SNP [dm6]	G	A	1.247e^-5	0.839	UPSTREAM retn INTRON retn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	12699254	X_12699254_SNP [dm3] X_12805221_SNP [dm6]	G	T	1.258e^-5	0.839	DOWNSTREAM CG3775 INTRON Pde9
2L	5544938	2L_5544938_SNP [dm3] 2L_5544938_SNP [dm6]	A	T	1.279e^-5	0.839	SYNONYMOUS_CODING Lam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	4364449	2L_4364449_SNP [dm3] 2L_4364449_SNP [dm6]	T	A	1.285e^-5	0.839	UPSTREAM CR45363 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14815037	3L_14815037_SNP [dm3] 3L_14821937_SNP [dm6]	A	C	1.387e^-5	0.839	INTRON CG17839
2L	12923423	2L_12923423_SNP [dm3] 2L_12923423_SNP [dm6]	T	G	1.526e^-5	0.839	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
X	14756883	X_14756883_SNP [dm3] X_14862850_SNP [dm6]	C	T	1.590e^-5	0.839	DOWNSTREAM CG9518 INTRON Flo2
2R	11726154	2R_11726154_SNP [dm3] 2R_15838649_SNP [dm6]	G	A	1.754e^-5	0.839	INTRON tun	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Trl
2R	17920187	2R_17920187_SNP [dm3] 2R_22032682_SNP [dm6]	G	T	1.789e^-5	0.839	INTRON CG34370
2L	588419	2L_588419_SNP [dm3] 2L_588419_SNP [dm6]	T	A	1.794e^-5	0.839	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
2L	5543811	2L_5543811_SNP [dm3] 2L_5543811_SNP [dm6]	T	A	1.820e^-5	0.839	INTRON Lam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	14756893	X_14756893_SNP [dm3] X_14862860_SNP [dm6]	T	A	1.881e^-5	0.839	DOWNSTREAM CG9518 INTRON Flo2
3L	14817946	3L_14817946_SNP [dm3] 3L_14824846_SNP [dm6]	A	G	1.888e^-5	0.839	INTRON CG17839
2L	5550103	2L_5550103_SNP [dm3] 2L_5550103_SNP [dm6]	A	G	1.930e^-5	0.839	SYNONYMOUS_CODING CG14014 DOWNSTREAM Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14811233	3L_14811233_SNP [dm3] 3L_14818133_SNP [dm6]	C	T	1.947e^-5	0.839	INTRON CG17839
3L	14817336	3L_14817336_SNP [dm3] 3L_14824236_SNP [dm6]	G	A	1.957e^-5	0.839	INTRON CG17839
3L	7894419	3L_7894419_SNP [dm3] 3L_7901319_SNP [dm6]	T	C	1.959e^-5	0.839	SYNONYMOUS_CODING pbl INTRON pbl
3R	20489343	3R_20489343_SNP [dm3] 3R_24663621_SNP [dm6]	G	A	1.967e^-5	0.839	INTRON slo	regulatory region REDfly_CRMs
3L	14785088	3L_14785088_SNP [dm3] 3L_14791988_SNP [dm6]	A	G	2.016e^-5	0.839	INTRON CG9425
3L	14827396	3L_14827396_SNP [dm3] 3L_14834296_SNP [dm6]	G	A	2.027e^-5	0.839	INTRON CG17839
3R	19769710	3R_19769710_SNP [dm3] 3R_23943988_SNP [dm6]	G	A	2.167e^-5	0.839	SYNONYMOUS_CODING CG12268 UPSTREAM Gdh	TF binding site mE1_TFBS_cad
X	21063578	X_21063578_SNP [dm3] X_21192551_SNP [dm6]	G	A	2.207e^-5	0.839	UPSTREAM CG14579 INTERGENIC
X	18730960	X_18730960_SNP [dm3] X_18836927_SNP [dm6]	A	T	2.250e^-5	0.839	INTRON Pvf1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18663595	3L_18663595_SNP [dm3] 3L_18670495_SNP [dm6]	T	C	2.289e^-5	0.839	SYNONYMOUS_CODING Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	15838910	2R_15838910_SNP [dm3] 2R_19951405_SNP [dm6]	T	A	2.302e^-5	0.839	UTR_5_PRIME CG10822
2L	5544156	2L_5544156_SNP [dm3] 2L_5544156_SNP [dm6]	A	C	2.311e^-5	0.839	NON_SYNONYMOUS_CODING Lam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13238951	2R_13238951_DEL [dm3] 2R_17351446_DEL [dm6]	GCGCGAAAATGAGTCAAAGA...	G	2.358e^-5	0.839	INTRON mbl
3L	12571201	3L_12571201_DEL [dm3] 3L_12578101_DEL [dm6]	AGAAATATTAGGAATAGGCT...	A	2.399e^-5	0.839	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5064424	X_5064424_SNP [dm3] X_5170391_SNP [dm6]	G	A	2.425e^-5	0.839	INTRON rg & 1 other
2R	16253834	2R_16253834_SNP [dm3] 2R_20366329_SNP [dm6]	C	T	2.462e^-5	0.839	INTERGENIC
3L	14827010	3L_14827010_SNP [dm3] 3L_14833910_SNP [dm6]	G	T	2.462e^-5	0.839	INTRON CG17839
2R	16253858	2R_16253858_SNP [dm3] 2R_20366353_SNP [dm6]	A	G	2.541e^-5	0.839	INTERGENIC
2L	4364464	2L_4364464_SNP [dm3] 2L_4364464_SNP [dm6]	C	G	2.550e^-5	0.839	UPSTREAM CR45363 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17603716	3L_17603716_SNP [dm3] 3L_17610616_SNP [dm6]	T	G	2.595e^-5	0.839	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl
3R	2868311	3R_2868311_INS [dm3] 3R_7042589_INS [dm6]	C	CGGA	2.670e^-5	0.848	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	14154319	X_14154319_SNP [dm3] X_14260286_SNP [dm6]	G	C	2.834e^-5	0.886	UPSTREAM CG1461 INTERGENIC
X	21160844	X_21160844_SNP [dm3] X_21289817_SNP [dm6]	G	C	3.076e^-5	0.945	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13504220	X_13504220_SNP [dm3] X_13610187_SNP [dm6]	T	C	3.347e^-5	0.961	SYNONYMOUS_CODING Ndc80 DOWNSTREAM CG11178	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7874040	3L_7874040_SNP [dm3] 3L_7880940_SNP [dm6]	G	C	3.420e^-5	0.961	INTRON CG32365
X	14840917	X_14840917_SNP [dm3] X_14946884_SNP [dm6]	T	C	3.443e^-5	0.961	INTRON pdgy
2L	5543854	2L_5543854_SNP [dm3] 2L_5543854_SNP [dm6]	G	A	3.458e^-5	0.961	INTRON Lam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	14376180	3L_14376180_SNP [dm3] 3L_14383080_SNP [dm6]	C	T	3.475e^-5	0.961	UTR_3_PRIME CG43120
X	14182626	X_14182626_SNP [dm3] X_14288593_SNP [dm6]	G	A	3.475e^-5	0.961	DOWNSTREAM Muc12Ea INTRON CG9400
2R	12809255	2R_12809255_SNP [dm3] 2R_16921750_SNP [dm6]	C	T	3.498e^-5	0.961	INTERGENIC
3L	1604286	3L_1604286_SNP [dm3] 3L_1604286_SNP [dm6]	A	T	3.590e^-5	0.961	NON_SYNONYMOUS_CODING CG18170 UTR_5_PRIME CG33791 UPSTREAM CG33791
2L	588413	2L_588413_SNP [dm3] 2L_588413_SNP [dm6]	T	C	3.593e^-5	0.961	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
X	4645841	X_4645841_SNP [dm3] X_4751808_SNP [dm6]	G	A	3.728e^-5	0.961	INTERGENIC
2L	13399279	2L_13399279_SNP [dm3] 2L_13399279_SNP [dm6]	G	C	3.833e^-5	0.961	SYNONYMOUS_CODING CG7110 UPSTREAM CG10859 EXON CR44600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	13399303	2L_13399303_SNP [dm3] 2L_13399303_SNP [dm6]	C	A	3.911e^-5	0.961	SYNONYMOUS_CODING CG7110 UPSTREAM CG10859 EXON CR44600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2R	7148303	2R_7148303_SNP [dm3] 2R_11260798_SNP [dm6]	C	G	4.050e^-5	0.961	UPSTREAM Cpr47Ec DOWNSTREAM Cpr47Ed INTERGENIC
2R	15839140	2R_15839140_SNP [dm3] 2R_19951635_SNP [dm6]	C	T	4.081e^-5	0.961	SYNONYMOUS_CODING CG10822
3L	9229668	3L_9229668_SNP [dm3] 3L_9236568_SNP [dm6]	T	C	4.113e^-5	0.961	NON_SYNONYMOUS_CODING CG4483
X	14167285	X_14167285_SNP [dm3] X_14273252_SNP [dm6]	G	A	4.154e^-5	0.961	INTRON na
3R	8477836	3R_8477836_SNP [dm3] 3R_12652114_SNP [dm6]	C	A	4.212e^-5	0.961	NON_SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_sens
3L	15700947	3L_15700947_SNP [dm3] 3L_15707847_SNP [dm6]	A	G	4.270e^-5	0.961	INTERGENIC
2R	15838613	2R_15838613_SNP [dm3] 2R_19951108_SNP [dm6]	G	A	4.275e^-5	0.961	UPSTREAM CG10822 INTERGENIC
3L	12571356	3L_12571356_SNP [dm3] 3L_12578256_SNP [dm6]	C	T	4.503e^-5	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14828782	3L_14828782_SNP [dm3] 3L_14835682_SNP [dm6]	A	C	4.624e^-5	0.961	INTRON CG17839
2R	7045208	2R_7045208_SNP [dm3] 2R_11157703_SNP [dm6]	C	A	4.666e^-5	0.961	INTRON CG13229
3L	14834278	3L_14834278_SNP [dm3] 3L_14841178_SNP [dm6]	G	T	4.695e^-5	0.961	INTRON CG17839
3R	25760016	3R_25760016_SNP [dm3] 3R_29934294_SNP [dm6]	A	C	4.719e^-5	0.961	NON_SYNONYMOUS_CODING CG42558 UTR_3_PRIME CG42557 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad
2R	15839122	2R_15839122_SNP [dm3] 2R_19951617_SNP [dm6]	G	A	4.766e^-5	0.961	SYNONYMOUS_CODING CG10822
2L	5550121	2L_5550121_SNP [dm3] 2L_5550121_SNP [dm6]	A	G	4.768e^-5	0.961	SYNONYMOUS_CODING CG14014 DOWNSTREAM Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10925619	2R_10925619_SNP [dm3] 2R_15038114_SNP [dm6]	A	G	4.965e^-5	0.961	INTRON hbs
X	5289897	X_5289897_SNP [dm3] X_5395864_SNP [dm6]	A	T	4.988e^-5	0.961	INTRON SK
X	5826894	X_5826894_INS [dm3] X_5932861_INS [dm6]	T	TT	5.118e^-5	0.961	INTRON CG3726
3R	10122680	3R_10122680_SNP [dm3] 3R_14296958_SNP [dm6]	T	A	5.154e^-5	0.961	INTRON CG12207
X	13504292	X_13504292_SNP [dm3] X_13610259_SNP [dm6]	G	C	5.216e^-5	0.961	SYNONYMOUS_CODING Ndc80 DOWNSTREAM CG11178	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11728415	3L_11728415_SNP [dm3] 3L_11735315_SNP [dm6]	C	T	5.288e^-5	0.961	UTR_3_PRIME CG6024 DOWNSTREAM CG6024
3L	7151754	3L_7151754_SNP [dm3] 3L_7158654_SNP [dm6]	G	A	5.301e^-5	0.961	SYNONYMOUS_CODING CG8620 UTR_3_PRIME CG8620 DOWNSTREAM Dscam2
2R	16289158	2R_16289158_DEL [dm3] 2R_20401653_DEL [dm6]	CCG	C	5.444e^-5	0.961	INTERGENIC
3L	14834277	3L_14834277_SNP [dm3] 3L_14841177_SNP [dm6]	T	A	5.484e^-5	0.961	INTRON CG17839
X	13504373	X_13504373_SNP [dm3] X_13610340_SNP [dm6]	C	T	5.552e^-5	0.961	SYNONYMOUS_CODING Ndc80 DOWNSTREAM CG11178	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	17441017	X_17441017_SNP [dm3] X_17546984_SNP [dm6]	G	A	5.650e^-5	0.961	INTRON CG43658
3R	19254668	3R_19254668_SNP [dm3] 3R_23428946_SNP [dm6]	G	A	5.676e^-5	0.961	INTRON CG4374	TF binding site BDTNP1_TFBS_prd
2L	6905302	2L_6905302_SNP [dm3] 2L_6905302_SNP [dm6]	C	T	5.695e^-5	0.961	SYNONYMOUS_CODING Nlg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9469843	2L_9469843_INS [dm3] 2L_9469843_INS [dm6]	A	AA	5.764e^-5	0.961	UPSTREAM CR43769 INTERGENIC
3R	6253276	3R_6253276_SNP [dm3] 3R_10427554_SNP [dm6]	G	A	5.829e^-5	0.961	INTERGENIC
3L	14356997	3L_14356997_SNP [dm3] 3L_14363897_SNP [dm6]	T	A	5.878e^-5	0.961	INTRON fz
2R	15917599	2R_15917599_SNP [dm3] 2R_20030094_SNP [dm6]	A	G	6.032e^-5	0.961	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	5462515	X_5462515_SNP [dm3] X_5568482_SNP [dm6]	C	T	6.063e^-5	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	5542022	2L_5542022_SNP [dm3] 2L_5542022_SNP [dm6]	T	A	6.202e^-5	0.961	UPSTREAM Lam & 1 other INTRON Hel25E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	10899715	3R_10899715_SNP [dm3] 3R_15073993_SNP [dm6]	T	C	6.240e^-5	0.961	INTRON dpr9
X	2926734	X_2926734_SNP [dm3] X_3032701_SNP [dm6]	C	A	6.480e^-5	0.961	INTRON kirre
3L	21600167	3L_21600167_SNP [dm3] 3L_21607067_SNP [dm6]	G	A	6.495e^-5	0.961	INTRON TfAP-2
3R	10410917	3R_10410917_SNP [dm3] 3R_14585195_SNP [dm6]	A	T	6.529e^-5	0.961	INTRON stumps	TF binding site BDTNP1_TFBS_prd
3L	5503175	3L_5503175_SNP [dm3] 3L_5510075_SNP [dm6]	G	T	6.671e^-5	0.961	INTRON CG34342
3L	14814972	3L_14814972_SNP [dm3] 3L_14821872_SNP [dm6]	A	T	6.705e^-5	0.961	INTRON CG17839
3R	19769844	3R_19769844_SNP [dm3] 3R_23944122_SNP [dm6]	C	T	6.710e^-5	0.961	INTRON CG12268	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	18076992	3L_18076992_SNP [dm3] 3L_18083892_SNP [dm6]	C	T	6.737e^-5	0.961	INTRON CR43253
X	21160839	X_21160839_SNP [dm3] X_21289812_SNP [dm6]	T	C	6.794e^-5	0.961	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7949087	3L_7949087_SNP [dm3] 3L_7955987_SNP [dm6]	C	A	6.837e^-5	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	9457526	2R_9457526_SNP [dm3] 2R_13570021_SNP [dm6]	C	G	6.892e^-5	0.961	DOWNSTREAM CG42807 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
3R	25026945	3R_25026945_SNP [dm3] 3R_29201223_SNP [dm6]	C	G	6.900e^-5	0.961	SYNONYMOUS_CODING CG11899 DOWNSTREAM Mesh1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6837834	3L_6837834_SNP [dm3] 3L_6844734_SNP [dm6]	T	C	6.968e^-5	0.961	INTERGENIC
3R	25212391	3R_25212391_SNP [dm3] 3R_29386669_SNP [dm6]	C	T	6.988e^-5	0.961	INTRON Ptp99A	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
3L	5893442	3L_5893442_SNP [dm3] 3L_5900342_SNP [dm6]	A	C	7.076e^-5	0.961	SYNONYMOUS_CODING CG32409 DOWNSTREAM CG5592 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6606992	2R_6606992_SNP [dm3] 2R_10719487_SNP [dm6]	A	T	7.078e^-5	0.961	INTRON stan
3R	6253307	3R_6253307_SNP [dm3] 3R_10427585_SNP [dm6]	G	T	7.137e^-5	0.961	INTERGENIC
2R	18364054	2R_18364054_SNP [dm3] 2R_22476549_SNP [dm6]	G	A	7.149e^-5	0.961	NON_SYNONYMOUS_CODING CG45063 UPSTREAM CG45062	TF binding site mE1_TFBS_cad
2L	5543966	2L_5543966_SNP [dm3] 2L_5543966_SNP [dm6]	A	C	7.198e^-5	0.961	INTRON Lam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	12849624	3L_12849624_SNP [dm3] 3L_12856524_SNP [dm6]	G	C	7.199e^-5	0.961	UTR_3_PRIME Ent3 DOWNSTREAM CG32107	TF binding site mE1_TFBS_cad
2L	5547552	2L_5547552_SNP [dm3] 2L_5547552_SNP [dm6]	T	A	7.216e^-5	0.961	UTR_5_PRIME Oscillin DOWNSTREAM Lam INTRON Oscillin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	11745379	2R_11745379_SNP [dm3] 2R_15857874_SNP [dm6]	T	A	7.267e^-5	0.961	UTR_3_PRIME Gpo-1 DOWNSTREAM CG12970
3L	14814974	3L_14814974_SNP [dm3] 3L_14821874_SNP [dm6]	A	G	7.325e^-5	0.961	INTRON CG17839
2L	5546839	2L_5546839_SNP [dm3] 2L_5546839_SNP [dm6]	T	C	7.376e^-5	0.961	UPSTREAM Oscillin DOWNSTREAM Lam INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
X	14154432	X_14154432_SNP [dm3] X_14260399_SNP [dm6]	A	T	7.419e^-5	0.961	UPSTREAM CG1461 INTERGENIC
2R	2939347	2R_2939347_SNP [dm3] 2R_7051842_SNP [dm6]	G	A	7.472e^-5	0.961	UTR_3_PRIME lbm UPSTREAM Tsp42En
2R	7148414	2R_7148414_SNP [dm3] 2R_11260909_SNP [dm6]	T	G	7.574e^-5	0.961	UPSTREAM Cpr47Ec DOWNSTREAM Cpr47Ed INTERGENIC
2R	17786779	2R_17786779_SNP [dm3] 2R_21899274_SNP [dm6]	T	C	7.584e^-5	0.961	INTRON Fili
2R	17618643	2R_17618643_SNP [dm3] 2R_21731138_SNP [dm6]	T	A	7.586e^-5	0.961	INTERGENIC
2L	718007	2L_718007_INS [dm3] 2L_718007_INS [dm6]	T	TT	7.631e^-5	0.961	INTERGENIC
2R	15840879	2R_15840879_SNP [dm3] 2R_19953374_SNP [dm6]	A	T	7.659e^-5	0.961	UPSTREAM CG44622 INTERGENIC
X	15425490	X_15425490_SNP [dm3] X_15531457_SNP [dm6]	T	A	7.720e^-5	0.961	INTRON Ac13E	TF binding site BDTNP1_TFBS_twi
3R	19736664	3R_19736664_SNP [dm3] 3R_23910942_SNP [dm6]	C	T	7.742e^-5	0.961	INTRON sba
X	14154449	X_14154449_SNP [dm3] X_14260416_SNP [dm6]	G	T	7.756e^-5	0.961	UPSTREAM CG1461 INTERGENIC
2L	13399150	2L_13399150_SNP [dm3] 2L_13399150_SNP [dm6]	A	G	7.801e^-5	0.961	UPSTREAM CG10859 INTRON CG7110 EXON CR44600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_ttk
2L	13399158	2L_13399158_SNP [dm3] 2L_13399158_SNP [dm6]	C	T	7.801e^-5	0.961	UPSTREAM CG10859 INTRON CG7110 EXON CR44600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_ttk
2R	9147482	2R_9147482_SNP [dm3] 2R_13259977_SNP [dm6]	A	G	7.891e^-5	0.961	UPSTREAM CG42319 INTERGENIC
3L	12571398	3L_12571398_SNP [dm3] 3L_12578298_SNP [dm6]	T	C	7.892e^-5	0.961	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	7.953e^-5	0.961	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	16052774	X_16052774_SNP [dm3] X_16158741_SNP [dm6]	A	G	8.014e^-5	0.961	INTERGENIC
X	5826875	X_5826875_SNP [dm3] X_5932842_SNP [dm6]	A	T	8.055e^-5	0.961	INTRON CG3726
X	17441018	X_17441018_SNP [dm3] X_17546985_SNP [dm6]	A	G	8.098e^-5	0.961	INTRON CG43658
3L	8814919	3L_8814919_SNP [dm3] 3L_8821819_SNP [dm6]	T	A	8.170e^-5	0.961	INTERGENIC
3R	27130631	3R_27130631_SNP [dm3] 3R_31304909_SNP [dm6]	G	C	8.174e^-5	0.961	INTRON CG11340	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25759599	3R_25759599_SNP [dm3] 3R_29933877_SNP [dm6]	C	T	8.214e^-5	0.961	NON_SYNONYMOUS_CODING CG42557 START_GAINED CG42558 UTR_5_PRIME CG42558 UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	9500123	X_9500123_SNP [dm3] X_9606090_SNP [dm6]	C	T	8.319e^-5	0.961	UPSTREAM Lst8 DOWNSTREAM Aats-lys INTERGENIC
3R	2868309	3R_2868309_SNP [dm3] 3R_7042587_SNP [dm6]	G	A	8.474e^-5	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	14814978	3L_14814978_SNP [dm3] 3L_14821878_SNP [dm6]	A	G	8.504e^-5	0.961	INTRON CG17839
3R	15213950	3R_15213950_SNP [dm3] 3R_19388228_SNP [dm6]	G	A	8.652e^-5	0.961	DOWNSTREAM CR34285 INTRON Ino80 & 1 other	TF binding site mE1_TFBS_sens
3R	19217624	3R_19217624_SNP [dm3] 3R_23391902_SNP [dm6]	G	A	8.661e^-5	0.961	INTERGENIC
2L	1677679	2L_1677679_SNP [dm3] 2L_1677679_SNP [dm6]	G	A	8.686e^-5	0.961	INTRON chinmo
2R	15839110	2R_15839110_SNP [dm3] 2R_19951605_SNP [dm6]	C	A	8.743e^-5	0.961	SYNONYMOUS_CODING CG10822
2L	2922839	2L_2922839_DEL [dm3] 2L_2922839_DEL [dm6]	TT	T	8.762e^-5	0.961	INTRON lilli
X	13504306	X_13504306_SNP [dm3] X_13610273_SNP [dm6]	G	A	8.799e^-5	0.961	SYNONYMOUS_CODING Ndc80 DOWNSTREAM CG11178	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14623642	3R_14623642_SNP [dm3] 3R_18797920_SNP [dm6]	G	A	8.809e^-5	0.961	INTERGENIC
3R	25562945	3R_25562945_SNP [dm3] 3R_29737223_SNP [dm6]	C	T	8.831e^-5	0.961	SYNONYMOUS_CODING CG7598 UPSTREAM CG7601	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Ubx
3R	27130557	3R_27130557_SNP [dm3] 3R_31304835_SNP [dm6]	T	A	8.855e^-5	0.961	INTRON CG11340	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10085481	3L_10085481_SNP [dm3] 3L_10092381_SNP [dm6]	T	C	8.964e^-5	0.961	UPSTREAM CG32053 DOWNSTREAM CG32054 INTRON dpr6	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	588357	2L_588357_SNP [dm3] 2L_588357_SNP [dm6]	A	T	9.050e^-5	0.961	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16052796	X_16052796_SNP [dm3] X_16158763_SNP [dm6]	C	T	9.071e^-5	0.961	INTERGENIC
X	19401744	X_19401744_SNP [dm3] X_19507711_SNP [dm6]	T	C	9.095e^-5	0.961	SYNONYMOUS_CODING Pfrx INTRON CG14200	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27130562	3R_27130562_SNP [dm3] 3R_31304840_SNP [dm6]	G	T	9.102e^-5	0.961	INTRON CG11340	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	16650285	3R_16650285_SNP [dm3] 3R_20824563_SNP [dm6]	T	A	9.129e^-5	0.961	UPSTREAM CG17272 DOWNSTREAM AdSS INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	22289371	3R_22289371_SNP [dm3] 3R_26463649_SNP [dm6]	A	G	9.153e^-5	0.961	INTRON CG5455
3R	25841904	3R_25841904_INS [dm3] 3R_30016182_INS [dm6]	T	TTCCTTCTGGCTTCCGGCTT...	9.161e^-5	0.961	UTR_3_PRIME Mgat2 UPSTREAM CG7920	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5548448	2L_5548448_SNP [dm3] 2L_5548448_SNP [dm6]	G	A	9.262e^-5	0.961	SYNONYMOUS_CODING Oscillin	TF binding site BDTNP1_TFBS_z mE1_TFBS_sens
2L	12723376	2L_12723376_SNP [dm3] 2L_12723376_SNP [dm6]	T	C	9.326e^-5	0.961	NON_SYNONYMOUS_CODING MRP	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_sens
3L	14834173	3L_14834173_INS [dm3] 3L_14841073_INS [dm6]	A	ATTGCAT	9.341e^-5	0.961	INTRON CG17839
X	5462305	X_5462305_INS [dm3] X_5568272_INS [dm6]	A	ACACA	9.374e^-5	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	20301797	3R_20301797_SNP [dm3] 3R_24476075_SNP [dm6]	A	C	9.560e^-5	0.961	INTERGENIC
2R	12447776	2R_12447776_SNP [dm3] 2R_16560271_SNP [dm6]	G	A	9.561e^-5	0.961	SYNONYMOUS_CODING DAT
3L	14555445	3L_14555445_SNP [dm3] 3L_14562345_SNP [dm6]	A	T	9.598e^-5	0.961	INTRON CG34039	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
3L	8582894	3L_8582894_SNP [dm3] 3L_8589794_SNP [dm6]	G	C	9.711e^-5	0.961	UPSTREAM CG43078 INTRON CG43078
2L	1235419	2L_1235419_SNP [dm3] 2L_1235419_SNP [dm6]	C	G	9.919e^-5	0.961	INTERGENIC
2L	19733007	2L_19733007_SNP [dm3] 2L_19733007_SNP [dm6]	C	A	9.951e^-5	0.961	SYNONYMOUS_CODING CG10462 DOWNSTREAM Lar
2R	7385125	2R_7385125_SNP [dm3] 2R_11497620_SNP [dm6]	A	G	9.957e^-5	0.961	INTRON inv
3R	15895240	3R_15895240_DEL [dm3] 3R_20069518_DEL [dm6]	ATA	A	9.981e^-5	0.961	INTERGENIC
2L	4364346	2L_4364346_SNP [dm3] 2L_4364346_SNP [dm6]	C	T	1.003e^-4	0.961	UPSTREAM CR45363 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17440995	X_17440995_SNP [dm3] X_17546962_SNP [dm6]	A	T	1.009e^-4	0.961	INTRON CG43658
3L	14814617	3L_14814617_SNP [dm3] 3L_14821517_SNP [dm6]	C	A	1.009e^-4	0.961	INTRON CG17839
3R	18915281	3R_18915281_SNP [dm3] 3R_23089559_SNP [dm6]	T	C	1.010e^-4	0.961	INTRON CG13830
3R	24974163	3R_24974163_SNP [dm3] 3R_29148441_SNP [dm6]	G	T	1.012e^-4	0.961	UTR_5_PRIME Pglym78 UPSTREAM CG11882	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	11455540	3R_11455540_DEL [dm3] 3R_15629818_DEL [dm6]	TCAGCTTGTCT...	T	1.016e^-4	0.961	INTERGENIC
X	4639870	X_4639870_SNP [dm3] X_4745837_SNP [dm6]	A	G	1.018e^-4	0.961	INTERGENIC
3L	14814340	3L_14814340_SNP [dm3] 3L_14821240_SNP [dm6]	G	C	1.031e^-4	0.961	INTRON CG17839
2L	414406	2L_414406_SNP [dm3] 2L_414406_SNP [dm6]	T	A	1.037e^-4	0.961	UPSTREAM ebi INTRON AP-2alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	19146880	2L_19146880_SNP [dm3] 2L_19146880_SNP [dm6]	G	T	1.045e^-4	0.961	INTRON brat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16655565	2R_16655565_SNP [dm3] 2R_20768060_SNP [dm6]	A	C	1.045e^-4	0.961	DOWNSTREAM CR44665 INTERGENIC
X	14170491	X_14170491_SNP [dm3] X_14276458_SNP [dm6]	A	C	1.045e^-4	0.961	NON_SYNONYMOUS_CODING na	TF binding site mE1_TFBS_cad
3L	8582618	3L_8582618_SNP [dm3] 3L_8589518_SNP [dm6]	T	C	1.046e^-4	0.961	UPSTREAM CG43078 INTRON CG43078
3L	10091656	3L_10091656_SNP [dm3] 3L_10098556_SNP [dm6]	C	A	1.055e^-4	0.961	UPSTREAM CG42825 DOWNSTREAM CG42826 INTRON dpr6
2L	19788624	2L_19788624_SNP [dm3] 2L_19788624_SNP [dm6]	A	T	1.059e^-4	0.961	INTRON CdGAPr
2L	5544791	2L_5544791_SNP [dm3] 2L_5544791_SNP [dm6]	T	G	1.074e^-4	0.961	INTRON Lam	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	413912	3L_413912_SNP [dm3] 3L_413912_SNP [dm6]	C	T	1.087e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	9147155	2R_9147155_SNP [dm3] 2R_13259650_SNP [dm6]	A	T	1.087e^-4	0.961	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3R	7273988	3R_7273988_SNP [dm3] 3R_11448266_SNP [dm6]	C	T	1.094e^-4	0.961	UTR_5_PRIME sals INTRON CG17230 & 1 other
2R	11671705	2R_11671705_SNP [dm3] 2R_15784200_SNP [dm6]	G	T	1.098e^-4	0.961	INTRON Zasp52	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5548999	2L_5548999_SNP [dm3] 2L_5548999_SNP [dm6]	A	C	1.108e^-4	0.961	UTR_3_PRIME Oscillin DOWNSTREAM CG14014 INTRON Oscillin
3L	7291341	3L_7291341_DEL [dm3] 3L_7298241_DEL [dm6]	GG	G	1.111e^-4	0.961	INTRON unc-13-4A
3R	19362721	3R_19362721_SNP [dm3] 3R_23536999_SNP [dm6]	T	A	1.115e^-4	0.961	UTR_3_PRIME CG10168 UPSTREAM CG16732
X	14475572	X_14475572_SNP [dm3] X_14581539_SNP [dm6]	T	C	1.125e^-4	0.961	DOWNSTREAM mRpS25 INTRON CG14414	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16146269	X_16146269_SNP [dm3] X_16252236_SNP [dm6]	T	C	1.125e^-4	0.961	INTERGENIC
2R	15839197	2R_15839197_SNP [dm3] 2R_19951692_SNP [dm6]	G	A	1.134e^-4	0.961	SYNONYMOUS_CODING CG10822
2L	5301022	2L_5301022_SNP [dm3] 2L_5301022_SNP [dm6]	G	A	1.141e^-4	0.961	INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	24427748	3R_24427748_SNP [dm3] 3R_28602026_SNP [dm6]	A	T	1.144e^-4	0.961	UPSTREAM snoRNA:Psi28S-3405c & 2 others DOWNSTREAM snoRNA:Psi28S-3405a & 2 others INTRON Hrb98DE
X	9500168	X_9500168_SNP [dm3] X_9606135_SNP [dm6]	T	C	1.153e^-4	0.961	UPSTREAM Lst8 DOWNSTREAM Aats-lys INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9990656	3L_9990656_SNP [dm3] 3L_9997556_SNP [dm6]	A	G	1.168e^-4	0.961	INTRON dpr6
3L	3090995	3L_3090995_SNP [dm3] 3L_3090995_SNP [dm6]	C	T	1.171e^-4	0.961	UTR_3_PRIME Cht7 DOWNSTREAM CG11486 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	14809022	3L_14809022_SNP [dm3] 3L_14815922_SNP [dm6]	A	T	1.175e^-4	0.961	INTRON CG17839
2R	13919961	2R_13919961_SNP [dm3] 2R_18032456_SNP [dm6]	C	G	1.176e^-4	0.961	INTERGENIC	transposable element FlyBase
2R	9887050	2R_9887050_SNP [dm3] 2R_13999545_SNP [dm6]	T	C	1.185e^-4	0.961	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	18675315	3L_18675315_SNP [dm3] 3L_18682215_SNP [dm6]	C	T	1.196e^-4	0.961	START_GAINED CG32202 UTR_5_PRIME CG32202 UPSTREAM Sgf11 DOWNSTREAM Chmp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16052807	X_16052807_SNP [dm3] X_16158774_SNP [dm6]	C	T	1.196e^-4	0.961	INTERGENIC
2R	13953258	2R_13953258_SNP [dm3] 2R_18065753_SNP [dm6]	C	T	1.202e^-4	0.961	INTRON CG34386
3R	13469273	3R_13469273_SNP [dm3] 3R_17643551_SNP [dm6]	T	C	1.206e^-4	0.961	INTRON CG43175
2L	14246210	2L_14246210_SNP [dm3] 2L_14246210_SNP [dm6]	C	T	1.213e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	9814806	X_9814806_DEL [dm3] X_9920773_DEL [dm6]	TT	T	1.221e^-4	0.961	INTERGENIC
X	4536298	X_4536298_SNP [dm3] X_4642265_SNP [dm6]	G	C	1.221e^-4	0.961	SYNONYMOUS_CODING CG3062 UTR_5_PRIME CG3081	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6795340	2R_6795340_SNP [dm3] 2R_10907835_SNP [dm6]	A	G	1.233e^-4	0.961	INTERGENIC
X	10719310	X_10719310_DEL [dm3] X_10825277_DEL [dm6]	AA	A	1.233e^-4	0.961	DOWNSTREAM CR45624 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10153400	3L_10153400_SNP [dm3] 3L_10160300_SNP [dm6]	A	G	1.235e^-4	0.961	INTRON dpr10
2L	5560612	2L_5560612_SNP [dm3] 2L_5560612_SNP [dm6]	C	T	1.247e^-4	0.961	INTRON GluRIIB
X	9500136	X_9500136_SNP [dm3] X_9606103_SNP [dm6]	G	A	1.255e^-4	0.961	UPSTREAM Lst8 DOWNSTREAM Aats-lys INTERGENIC
2L	14849332	2L_14849332_DEL [dm3] 2L_14849332_DEL [dm6]	GCATTGCCCTTTAGATACTG...	G	1.257e^-4	0.961	UPSTREAM CG15279 INTRON CG15279
3L	10000475	3L_10000475_SNP [dm3] 3L_10007375_SNP [dm6]	A	T	1.259e^-4	0.961	INTRON dpr6
3L	10000478	3L_10000478_SNP [dm3] 3L_10007378_SNP [dm6]	T	C	1.259e^-4	0.961	INTRON dpr6
2R	16969831	2R_16969831_SNP [dm3] 2R_21082326_SNP [dm6]	T	C	1.259e^-4	0.961	INTRON Treh
2L	5550196	2L_5550196_SNP [dm3] 2L_5550196_SNP [dm6]	T	G	1.261e^-4	0.961	SYNONYMOUS_CODING CG14014 DOWNSTREAM Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13325482	2L_13325482_SNP [dm3] 2L_13325482_SNP [dm6]	C	A	1.262e^-4	0.961	INTRON CG43778
2L	6851126	2L_6851126_SNP [dm3] 2L_6851126_SNP [dm6]	G	T	1.263e^-4	0.961	INTERGENIC
3R	13570329	3R_13570329_SNP [dm3] 3R_17744607_SNP [dm6]	A	C	1.263e^-4	0.961	INTRON TyrRII	TF binding site mE1_TFBS_cad
3L	14813948	3L_14813948_SNP [dm3] 3L_14820848_SNP [dm6]	G	A	1.265e^-4	0.961	INTRON CG17839
2L	5560580	2L_5560580_SNP [dm3] 2L_5560580_SNP [dm6]	A	T	1.266e^-4	0.961	INTRON GluRIIB
3R	18208044	3R_18208044_SNP [dm3] 3R_22382322_SNP [dm6]	T	G	1.274e^-4	0.961	SPLICE_SITE_REGION CG43343 DOWNSTREAM CG43342 INTRON CG43343
3R	20509028	3R_20509028_SNP [dm3] 3R_24683306_SNP [dm6]	T	A	1.274e^-4	0.961	INTRON slo
X	5810038	X_5810038_SNP [dm3] X_5916005_SNP [dm6]	T	C	1.276e^-4	0.961	UPSTREAM CG3011 INTRON CG3011
3R	9379106	3R_9379106_SNP [dm3] 3R_13553384_SNP [dm6]	G	C	1.284e^-4	0.961	INTERGENIC
2L	10556464	2L_10556464_SNP [dm3] 2L_10556464_SNP [dm6]	C	A	1.285e^-4	0.961	INTRON Trim9
3R	8478757	3R_8478757_SNP [dm3] 3R_12653035_SNP [dm6]	A	G	1.286e^-4	0.961	DOWNSTREAM Dtg INTERGENIC
3R	5440366	3R_5440366_SNP [dm3] 3R_9614644_SNP [dm6]	C	A	1.286e^-4	0.961	INTRON CG8312
3L	4545925	3L_4545925_SNP [dm3] 3L_4545925_SNP [dm6]	C	A	1.287e^-4	0.961	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	14834685	3L_14834685_SNP [dm3] 3L_14841585_SNP [dm6]	G	T	1.292e^-4	0.961	INTRON CG17839
3R	20995023	3R_20995023_SNP [dm3] 3R_25169301_SNP [dm6]	C	G	1.298e^-4	0.961	DOWNSTREAM lobo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2614952	2L_2614952_SNP [dm3] 2L_2614952_SNP [dm6]	A	T	1.298e^-4	0.961	INTERGENIC
2R	16969807	2R_16969807_SNP [dm3] 2R_21082302_SNP [dm6]	T	C	1.317e^-4	0.961	INTRON Treh
3L	21600286	3L_21600286_INS [dm3] 3L_21607186_INS [dm6]	C	CACCTATGTTC...	1.324e^-4	0.961	UPSTREAM TfAP-2 INTRON TfAP-2
2L	20860404	2L_20860404_SNP [dm3] 2L_20860404_SNP [dm6]	C	T	1.325e^-4	0.961	INTRON CG9336
X	13504376	X_13504376_SNP [dm3] X_13610343_SNP [dm6]	A	T	1.329e^-4	0.961	SYNONYMOUS_CODING Ndc80 DOWNSTREAM CG11178	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12282058	2R_12282058_SNP [dm3] 2R_16394553_SNP [dm6]	G	A	1.330e^-4	0.961	INTRON Sema-2b
3R	22435414	3R_22435414_SNP [dm3] 3R_26609692_SNP [dm6]	G	T	1.330e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	9771649	3R_9771649_SNP [dm3] 3R_13945927_SNP [dm6]	T	A	1.332e^-4	0.961	UPSTREAM Art6 INTERGENIC
3R	25080196	3R_25080196_SNP [dm3] 3R_29254474_SNP [dm6]	C	G	1.341e^-4	0.961	INTRON stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	14818175	3L_14818175_SNP [dm3] 3L_14825075_SNP [dm6]	T	G	1.342e^-4	0.961	INTRON CG17839
3R	10122626	3R_10122626_SNP [dm3] 3R_14296904_SNP [dm6]	G	A	1.347e^-4	0.961	INTRON CG12207
3R	10122629	3R_10122629_SNP [dm3] 3R_14296907_SNP [dm6]	T	C	1.347e^-4	0.961	INTRON CG12207
3L	14813879	3L_14813879_SNP [dm3] 3L_14820779_SNP [dm6]	A	T	1.347e^-4	0.961	INTRON CG17839
3L	14394687	3L_14394687_SNP [dm3] 3L_14401587_SNP [dm6]	T	C	1.362e^-4	0.961	NON_SYNONYMOUS_CODING CG3868
3L	14565106	3L_14565106_DEL [dm3] 3L_14572006_DEL [dm6]	TT	T	1.366e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	16436332	3L_16436332_SNP [dm3] 3L_16443232_SNP [dm6]	G	A	1.381e^-4	0.961	INTRON CG33158 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6378932	2R_6378932_SNP [dm3] 2R_10491427_SNP [dm6]	A	T	1.384e^-4	0.961	UTR_3_PRIME lola INTRON lola
2R	15839488	2R_15839488_DEL [dm3] 2R_19951983_DEL [dm6]	GC	G	1.384e^-4	0.961	DOWNSTREAM CG10822 INTERGENIC
2L	18910570	2L_18910570_SNP [dm3] 2L_18910570_SNP [dm6]	C	T	1.401e^-4	0.961	INTERGENIC
2R	9147009	2R_9147009_SNP [dm3] 2R_13259504_SNP [dm6]	T	G	1.412e^-4	0.961	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2R	7385134	2R_7385134_SNP [dm3] 2R_11497629_SNP [dm6]	G	A	1.412e^-4	0.961	INTRON inv
3R	4401702	3R_4401702_DEL [dm3] 3R_8575980_DEL [dm6]	GCATTTGCGGCTGATTAAAG...	G	1.430e^-4	0.961	INTERGENIC
2R	11855480	2R_11855480_SNP [dm3] 2R_15967975_SNP [dm6]	G	T	1.435e^-4	0.961	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2R	9147438	2R_9147438_SNP [dm3] 2R_13259933_SNP [dm6]	G	A	1.436e^-4	0.961	UPSTREAM CG42319 INTERGENIC
2R	14451040	2R_14451040_SNP [dm3] 2R_18563535_SNP [dm6]	A	G	1.438e^-4	0.961	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13399477	2L_13399477_SNP [dm3] 2L_13399477_SNP [dm6]	T	G	1.440e^-4	0.961	NON_SYNONYMOUS_CODING CG7110 UPSTREAM CG10859 EXON CR44600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
X	14768964	X_14768964_SNP [dm3] X_14874931_SNP [dm6]	T	C	1.451e^-4	0.961	DOWNSTREAM CG45065 & 1 other INTRON Flo2
2L	10565655	2L_10565655_SNP [dm3] 2L_10565655_SNP [dm6]	G	C	1.451e^-4	0.961	INTRON Trim9
3L	11599845	3L_11599845_SNP [dm3] 3L_11606745_SNP [dm6]	T	C	1.454e^-4	0.961	SYNONYMOUS_CODING CG6091
2R	9147422	2R_9147422_SNP [dm3] 2R_13259917_SNP [dm6]	A	T	1.483e^-4	0.961	UPSTREAM CG42319 INTERGENIC
3L	413923	3L_413923_SNP [dm3] 3L_413923_SNP [dm6]	A	G	1.485e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	10925628	2R_10925628_SNP [dm3] 2R_15038123_SNP [dm6]	C	T	1.486e^-4	0.961	INTRON hbs
2R	11635388	2R_11635388_SNP [dm3] 2R_15747883_SNP [dm6]	G	A	1.490e^-4	0.961	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15700949	3L_15700949_SNP [dm3] 3L_15707849_SNP [dm6]	C	G	1.509e^-4	0.961	INTERGENIC
2L	6851127	2L_6851127_SNP [dm3] 2L_6851127_SNP [dm6]	C	A	1.516e^-4	0.961	INTERGENIC
X	19401789	X_19401789_SNP [dm3] X_19507756_SNP [dm6]	C	T	1.522e^-4	0.961	SYNONYMOUS_CODING Pfrx INTRON CG14200	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10518960	3L_10518960_SNP [dm3] 3L_10525860_SNP [dm6]	T	G	1.534e^-4	0.961	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11791042	3L_11791042_SNP [dm3] 3L_11797942_SNP [dm6]	A	G	1.535e^-4	0.961	SYNONYMOUS_CODING Klp68D	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13551970	2R_13551970_SNP [dm3] 2R_17664465_SNP [dm6]	C	A	1.535e^-4	0.961	INTRON CCHa1-R
X	17440839	X_17440839_SNP [dm3] X_17546806_SNP [dm6]	A	G	1.546e^-4	0.961	INTRON CG43658
2R	15839481	2R_15839481_SNP [dm3] 2R_19951976_SNP [dm6]	C	G	1.548e^-4	0.961	DOWNSTREAM CG10822 INTERGENIC
2R	11576437	2R_11576437_SNP [dm3] 2R_15688932_SNP [dm6]	T	C	1.550e^-4	0.961	NON_SYNONYMOUS_CODING Cep89 UPSTREAM CG30090	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5544315	2L_5544315_SNP [dm3] 2L_5544315_SNP [dm6]	A	G	1.551e^-4	0.961	SYNONYMOUS_CODING Lam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	18731292	X_18731292_SNP [dm3] X_18837259_SNP [dm6]	T	A	1.554e^-4	0.961	INTRON Pvf1	TF binding site mE1_TFBS_sens
X	10868903	X_10868903_SNP [dm3] X_10974870_SNP [dm6]	A	G	1.560e^-4	0.961	INTRON CG42339
2R	13242811	2R_13242811_SNP [dm3] 2R_17355306_SNP [dm6]	T	A	1.564e^-4	0.961	INTRON mbl
2L	13399470	2L_13399470_SNP [dm3] 2L_13399470_SNP [dm6]	C	A	1.566e^-4	0.961	NON_SYNONYMOUS_CODING CG7110 UPSTREAM CG10859 EXON CR44600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2R	14517146	2R_14517146_SNP [dm3] 2R_18629641_SNP [dm6]	G	T	1.575e^-4	0.961	UTR_3_PRIME CG5482 DOWNSTREAM CG5482 & 1 other	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	21368007	3R_21368007_SNP [dm3] 3R_25542285_SNP [dm6]	T	A	1.575e^-4	0.961	INTRON msi
2R	11576600	2R_11576600_SNP [dm3] 2R_15689095_SNP [dm6]	G	T	1.579e^-4	0.961	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6017234	2R_6017234_SNP [dm3] 2R_10129729_SNP [dm6]	T	C	1.582e^-4	0.961	INTRON gem
X	6100428	X_6100428_INS [dm3] X_6206395_INS [dm6]	A	AA	1.583e^-4	0.961	INTERGENIC
3R	10573746	3R_10573746_SNP [dm3] 3R_14748024_SNP [dm6]	A	G	1.595e^-4	0.961	UPSTREAM smp-30 INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2L	9463855	2L_9463855_SNP [dm3] 2L_9463855_SNP [dm6]	C	T	1.595e^-4	0.961	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_kn
3L	10085075	3L_10085075_SNP [dm3] 3L_10091975_SNP [dm6]	A	C	1.603e^-4	0.961	DOWNSTREAM CG32054 INTRON dpr6 & 1 other	TF binding site BDTNP1_TFBS_twi
X	14756491	X_14756491_SNP [dm3] X_14862458_SNP [dm6]	A	T	1.610e^-4	0.961	DOWNSTREAM CG9518 INTRON Flo2
X	14167542	X_14167542_SNP [dm3] X_14273509_SNP [dm6]	G	A	1.615e^-4	0.961	INTRON na
3L	16331071	3L_16331071_SNP [dm3] 3L_16337971_SNP [dm6]	C	A	1.615e^-4	0.961	INTERGENIC
2R	18796668	2R_18796668_SNP [dm3] 2R_22909145_SNP [dm6]	G	A	1.620e^-4	0.961	INTRON nahoda
3R	26486380	3R_26486380_SNP [dm3] 3R_30660658_SNP [dm6]	A	T	1.621e^-4	0.961	INTERGENIC
3R	20300904	3R_20300904_SNP [dm3] 3R_24475182_SNP [dm6]	T	G	1.623e^-4	0.961	INTERGENIC
3R	25842576	3R_25842576_SNP [dm3] 3R_30016854_SNP [dm6]	G	A	1.624e^-4	0.961	SYNONYMOUS_CODING Mgat2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24456060	3R_24456060_SNP [dm3] 3R_28630338_SNP [dm6]	T	C	1.626e^-4	0.961	INTRON CG10011	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	4152861	3L_4152861_SNP [dm3] 3L_4152861_SNP [dm6]	G	A	1.628e^-4	0.961	DOWNSTREAM CG1299 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9147010	2R_9147010_SNP [dm3] 2R_13259505_SNP [dm6]	T	G	1.642e^-4	0.961	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3L	10087192	3L_10087192_SNP [dm3] 3L_10094092_SNP [dm6]	G	T	1.649e^-4	0.961	SYNONYMOUS_CODING CG32054 INTRON dpr6
2R	19703974	2R_19703974_SNP [dm3] 2R_23816451_SNP [dm6]	G	T	1.649e^-4	0.961	INTRON CG4797
3R	8478837	3R_8478837_SNP [dm3] 3R_12653115_SNP [dm6]	G	T	1.650e^-4	0.961	DOWNSTREAM Dtg INTERGENIC
2R	9147435	2R_9147435_SNP [dm3] 2R_13259930_SNP [dm6]	T	A	1.653e^-4	0.961	UPSTREAM CG42319 INTERGENIC
2L	5167772	2L_5167772_SNP [dm3] 2L_5167772_SNP [dm6]	A	G	1.662e^-4	0.961	SYNONYMOUS_CODING Msp300 INTRON Msp300
3R	25125888	3R_25125888_SNP [dm3] 3R_29300166_SNP [dm6]	C	A	1.662e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	5560582	2L_5560582_SNP [dm3] 2L_5560582_SNP [dm6]	G	T	1.662e^-4	0.961	INTRON GluRIIB
2L	5560599	2L_5560599_SNP [dm3] 2L_5560599_SNP [dm6]	C	A	1.662e^-4	0.961	INTRON GluRIIB
3R	15025409	3R_15025409_SNP [dm3] 3R_19199687_SNP [dm6]	A	G	1.663e^-4	0.961	INTRON CG31475
3R	10440428	3R_10440428_SNP [dm3] 3R_14614706_SNP [dm6]	C	T	1.670e^-4	0.961	INTRON CG14853
2R	13953250	2R_13953250_SNP [dm3] 2R_18065745_SNP [dm6]	C	T	1.684e^-4	0.961	INTRON CG34386
3L	14057292	3L_14057292_SNP [dm3] 3L_14064192_SNP [dm6]	C	T	1.687e^-4	0.961	INTRON CG32138	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	7938349	3L_7938349_SNP [dm3] 3L_7945249_SNP [dm6]	C	T	1.693e^-4	0.961	DOWNSTREAM CG43880 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7938356	3L_7938356_INS [dm3] 3L_7945256_INS [dm6]	C	CTT	1.693e^-4	0.961	DOWNSTREAM CG43880 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7938358	3L_7938358_SNP [dm3] 3L_7945258_SNP [dm6]	C	A	1.693e^-4	0.961	DOWNSTREAM CG43880 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7938362	3L_7938362_INS [dm3] 3L_7945262_INS [dm6]	G	TTTCATC	1.693e^-4	0.961	DOWNSTREAM CG43880 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13920005	2R_13920005_SNP [dm3] 2R_18032500_SNP [dm6]	G	A	1.704e^-4	0.961	INTERGENIC
X	14756956	X_14756956_SNP [dm3] X_14862923_SNP [dm6]	A	C	1.708e^-4	0.961	DOWNSTREAM CG9518 INTRON Flo2
3R	2708583	3R_2708583_SNP [dm3] 3R_6882861_SNP [dm6]	A	T	1.718e^-4	0.961	INTRON CR44931	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	12155898	3L_12155898_SNP [dm3] 3L_12162798_SNP [dm6]	T	C	1.730e^-4	0.961	INTRON CG9760
2R	9147038	2R_9147038_SNP [dm3] 2R_13259533_SNP [dm6]	G	A	1.730e^-4	0.961	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2R	6795339	2R_6795339_SNP [dm3] 2R_10907834_SNP [dm6]	G	T	1.731e^-4	0.961	INTERGENIC
3R	8638979	3R_8638979_SNP [dm3] 3R_12813257_SNP [dm6]	C	G	1.735e^-4	0.961	INTRON CG31345
2L	22297166	2L_22297166_SNP [dm3] 2L_22297166_SNP [dm6]	G	T	1.735e^-4	0.961	INTERGENIC	transposable element FlyBase
2L	5550661	2L_5550661_SNP [dm3] 2L_5550661_SNP [dm6]	G	A	1.739e^-4	0.961	SYNONYMOUS_CODING CG14014	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5543810	2L_5543810_SNP [dm3] 2L_5543810_SNP [dm6]	C	A	1.743e^-4	0.961	INTRON Lam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	7961322	2R_7961322_SNP [dm3] 2R_12073817_SNP [dm6]	C	T	1.752e^-4	0.962	INTRON CG8888
2L	5167867	2L_5167867_SNP [dm3] 2L_5167867_SNP [dm6]	C	T	1.775e^-4	0.962	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	1172112	3L_1172112_SNP [dm3] 3L_1172112_SNP [dm6]	C	G	1.776e^-4	0.962	INTRON bab2	regulatory region REDfly_CRMs
3R	20489370	3R_20489370_SNP [dm3] 3R_24663648_SNP [dm6]	G	T	1.777e^-4	0.962	INTRON slo	regulatory region REDfly_CRMs
3L	9676620	3L_9676620_SNP [dm3] 3L_9683520_SNP [dm6]	C	A	1.787e^-4	0.962	DOWNSTREAM CG6767 & 1 other INTERGENIC
3R	25871529	3R_25871529_SNP [dm3] 3R_30045807_SNP [dm6]	T	C	1.790e^-4	0.962	UPSTREAM CG7943 DOWNSTREAM Sry-delta INTRON RpL32	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3R	19656517	3R_19656517_SNP [dm3] 3R_23830795_SNP [dm6]	A	C	1.799e^-4	0.962	INTRON CG34355
2L	7365708	2L_7365708_SNP [dm3] 2L_7365708_SNP [dm6]	C	T	1.812e^-4	0.962	INTRON Wnt10
X	21946768	X_21946768_SNP [dm3] X_22544932_SNP [dm6]	T	C	1.815e^-4	0.962	UPSTREAM CG17599 INTERGENIC
2L	5550423	2L_5550423_SNP [dm3] 2L_5550423_SNP [dm6]	G	T	1.818e^-4	0.962	NON_SYNONYMOUS_CODING CG14014 DOWNSTREAM Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9051714	2L_9051714_DEL [dm3] 2L_9051714_DEL [dm6]	CG	C	1.821e^-4	0.962	UTR_3_PRIME CG31708
X	2253302	X_2253302_SNP [dm3] X_2359269_SNP [dm6]	A	T	1.833e^-4	0.962	INTRON ptr
3L	14805978	3L_14805978_SNP [dm3] 3L_14812878_SNP [dm6]	G	C	1.834e^-4	0.962	INTRON CG17839	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	5744978	X_5744978_INS [dm3] X_5850945_INS [dm6]	C	CAACCAACC	1.843e^-4	0.962	INTERGENIC
3L	12518314	3L_12518314_SNP [dm3] 3L_12525214_SNP [dm6]	A	G	1.847e^-4	0.962	SYNONYMOUS_CODING eIF-2beta DOWNSTREAM ver	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12900268	3L_12900268_SNP [dm3] 3L_12907168_SNP [dm6]	A	G	1.847e^-4	0.962	INTERGENIC
2R	20139803	2R_20139803_SNP [dm3] 2R_24252280_SNP [dm6]	A	T	1.852e^-4	0.962	UPSTREAM Ir60a DOWNSTREAM snoRNA:Me18S-A1597 INTRON nord
2L	588293	2L_588293_SNP [dm3] 2L_588293_SNP [dm6]	G	T	1.852e^-4	0.962	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10264877	3L_10264877_SNP [dm3] 3L_10271777_SNP [dm6]	G	A	1.853e^-4	0.962	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	14154318	X_14154318_SNP [dm3] X_14260285_SNP [dm6]	T	G	1.853e^-4	0.962	UPSTREAM CG1461 INTERGENIC
X	4537412	X_4537412_SNP [dm3] X_4643379_SNP [dm6]	C	T	1.858e^-4	0.962	INTRON CG3081 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	19472074	3L_19472074_SNP [dm3] 3L_19478974_SNP [dm6]	G	A	1.861e^-4	0.962	UPSTREAM CR32207 DOWNSTREAM CR42842 INTERGENIC
3R	24820918	3R_24820918_SNP [dm3] 3R_28995196_SNP [dm6]	T	G	1.867e^-4	0.962	INTRON wat	TF binding site mE1_TFBS_HSA
3L	1066558	3L_1066558_SNP [dm3] 3L_1066558_SNP [dm6]	C	G	1.867e^-4	0.962	INTRON bab1
X	2926031	X_2926031_SNP [dm3] X_3031998_SNP [dm6]	C	A	1.883e^-4	0.967	INTRON kirre
2R	6379235	2R_6379235_SNP [dm3] 2R_10491730_SNP [dm6]	C	T	1.892e^-4	0.969	UTR_3_PRIME lola INTRON lola
3L	2646601	3L_2646601_SNP [dm3] 3L_2646601_SNP [dm6]	T	C	1.901e^-4	0.97	UTR_3_PRIME CG1143	TF binding site mE1_TFBS_cad
3L	10095599	3L_10095599_SNP [dm3] 3L_10102499_SNP [dm6]	G	A	1.906e^-4	0.97	INTRON dpr6
2L	588397	2L_588397_SNP [dm3] 2L_588397_SNP [dm6]	G	C	1.913e^-4	0.97	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
3R	25844889	3R_25844889_SNP [dm3] 3R_30019167_SNP [dm6]	T	C	1.914e^-4	0.97	INTRON Mgat2	TF binding site mE1_TFBS_chinmo
2R	17785026	2R_17785026_SNP [dm3] 2R_21897521_SNP [dm6]	G	A	1.920e^-4	0.97	INTRON Fili
3R	22858278	3R_22858278_SNP [dm3] 3R_27032556_SNP [dm6]	A	T	1.932e^-4	0.971	INTRON RYa-R	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	17708422	2R_17708422_SNP [dm3] 2R_21820917_SNP [dm6]	C	G	1.947e^-4	0.971	NON_SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15115415	2L_15115415_SNP [dm3] 2L_15115415_SNP [dm6]	T	C	1.950e^-4	0.971	SYNONYMOUS_CODING stc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9571394	2L_9571394_SNP [dm3] 2L_9571394_SNP [dm6]	G	A	1.965e^-4	0.971	UTR_5_PRIME CG3838 INTRON CG3838
3R	10695984	3R_10695984_SNP [dm3] 3R_14870262_SNP [dm6]	G	A	1.968e^-4	0.971	INTRON btsz
2R	13919957	2R_13919957_INS [dm3] 2R_18032452_INS [dm6]	G	GTCAA	1.972e^-4	0.971	INTERGENIC	transposable element FlyBase
3R	25125893	3R_25125893_INS [dm3] 3R_29300171_INS [dm6]	A	AA	1.973e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	25125906	3R_25125906_SNP [dm3] 3R_29300184_SNP [dm6]	A	C	1.973e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	10786018	3R_10786018_SNP [dm3] 3R_14960296_SNP [dm6]	G	A	1.978e^-4	0.971	INTERGENIC
3R	16899060	3R_16899060_DEL [dm3] 3R_21073338_DEL [dm6]	TGT	T	1.982e^-4	0.971	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad
2R	12059530	2R_12059530_SNP [dm3] 2R_16172025_SNP [dm6]	T	C	1.985e^-4	0.971	INTRON Ptp52F	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	17440822	X_17440822_SNP [dm3] X_17546789_SNP [dm6]	T	C	1.985e^-4	0.971	INTRON CG43658
3R	9872318	3R_9872318_SNP [dm3] 3R_14046596_SNP [dm6]	C	T	1.993e^-4	0.971	INTERGENIC
3L	12571334	3L_12571334_SNP [dm3] 3L_12578234_SNP [dm6]	A	T	1.997e^-4	0.971	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	1.999e^-4	0.971	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7480629	3L_7480629_SNP [dm3] 3L_7487529_SNP [dm6]	C	T	2.018e^-4	0.978	INTRON mthl6
3L	7874301	3L_7874301_SNP [dm3] 3L_7881201_SNP [dm6]	T	C	2.029e^-4	0.979	INTRON CG32365
3L	7777439	3L_7777439_SNP [dm3] 3L_7784339_SNP [dm6]	C	T	2.036e^-4	0.979	INTRON CG32369
3R	13657502	3R_13657502_SNP [dm3] 3R_17831780_SNP [dm6]	G	A	2.038e^-4	0.979	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	9816859	X_9816859_DEL [dm3] X_9922826_DEL [dm6]	CC	C	2.045e^-4	0.979	INTERGENIC
2R	18013906	2R_18013906_SNP [dm3] 2R_22126401_SNP [dm6]	A	G	2.048e^-4	0.979	SYNONYMOUS_CODING GM130	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10011102	X_10011102_SNP [dm3] X_10117069_SNP [dm6]	T	A	2.072e^-4	0.985	INTRON RhoU & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12242922	X_12242922_INS [dm3] X_12348889_INS [dm6]	T	TAT	2.082e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11647915	2R_11647915_SNP [dm3] 2R_15760410_SNP [dm6]	G	A	2.087e^-4	0.985	INTRON CG30089	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10122627	3R_10122627_SNP [dm3] 3R_14296905_SNP [dm6]	A	T	2.092e^-4	0.985	INTRON CG12207
2R	9404826	2R_9404826_SNP [dm3] 2R_13517321_SNP [dm6]	A	G	2.103e^-4	0.985	UTR_3_PRIME Vmat & 1 other DOWNSTREAM Vmat
3L	2643105	3L_2643105_DEL [dm3] 3L_2643105_DEL [dm6]	TAATAT	T	2.106e^-4	0.985	INTRON CG14949
3L	2683655	3L_2683655_SNP [dm3] 3L_2683655_SNP [dm6]	A	G	2.108e^-4	0.985	INTRON Fife
2R	13853486	2R_13853486_SNP [dm3] 2R_17965981_SNP [dm6]	G	A	2.111e^-4	0.985	INTERGENIC
X	4865876	X_4865876_DEL [dm3] X_4971843_DEL [dm6]	ATATATATATATATAT...	A	2.121e^-4	0.985	INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	15025537	3R_15025537_SNP [dm3] 3R_19199815_SNP [dm6]	G	T	2.132e^-4	0.985	INTRON CG31475
3R	5042478	3R_5042478_SNP [dm3] 3R_9216756_SNP [dm6]	T	G	2.132e^-4	0.985	INTRON pum	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	14623513	3R_14623513_SNP [dm3] 3R_18797791_SNP [dm6]	T	C	2.133e^-4	0.985	INTERGENIC
3L	14832054	3L_14832054_SNP [dm3] 3L_14838954_SNP [dm6]	A	T	2.133e^-4	0.985	INTRON CG17839
2L	5560554	2L_5560554_DEL [dm3] 2L_5560554_DEL [dm6]	CATA	C	2.133e^-4	0.985	INTRON GluRIIB
3L	14832930	3L_14832930_DEL [dm3] 3L_14839830_DEL [dm6]	AATAA	A	2.169e^-4	0.989	INTRON CG17839
2L	19146962	2L_19146962_SNP [dm3] 2L_19146962_SNP [dm6]	G	A	2.174e^-4	0.989	INTRON brat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14028771	3R_14028771_SNP [dm3] 3R_18203049_SNP [dm6]	C	A	2.182e^-4	0.989	INTRON CG7985
3L	10084868	3L_10084868_SNP [dm3] 3L_10091768_SNP [dm6]	C	A	2.182e^-4	0.989	DOWNSTREAM CG32054 INTRON dpr6 & 1 other	TF binding site BDTNP1_TFBS_twi
2L	17385513	2L_17385513_SNP [dm3] 2L_17385513_SNP [dm6]	C	A	2.200e^-4	0.989	UPSTREAM CLIP-190 INTRON CLIP-190	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Ubx
3R	15895202	3R_15895202_SNP [dm3] 3R_20069480_SNP [dm6]	A	T	2.206e^-4	0.989	INTERGENIC
3R	20396321	3R_20396321_SNP [dm3] 3R_24570599_SNP [dm6]	T	A	2.213e^-4	0.989	INTRON CG13624
2L	2739080	2L_2739080_SNP [dm3] 2L_2739080_SNP [dm6]	A	C	2.214e^-4	0.989	UPSTREAM Hrs INTRON CG31689
X	14183552	X_14183552_SNP [dm3] X_14289519_SNP [dm6]	T	A	2.218e^-4	0.989	UPSTREAM CG9400 INTERGENIC	TF binding site mE1_TFBS_HSA
X	13504457	X_13504457_SNP [dm3] X_13610424_SNP [dm6]	G	A	2.219e^-4	0.989	SYNONYMOUS_CODING Ndc80 DOWNSTREAM CG11178	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	14814995	3L_14814995_SNP [dm3] 3L_14821895_SNP [dm6]	G	T	2.236e^-4	0.989	INTRON CG17839
3R	25989868	3R_25989868_SNP [dm3] 3R_30164146_SNP [dm6]	T	C	2.236e^-4	0.989	DOWNSTREAM CG31030 INTERGENIC
3L	11930368	3L_11930368_SNP [dm3] 3L_11937268_SNP [dm6]	C	A	2.238e^-4	0.989	NON_SYNONYMOUS_CODING CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9499586	X_9499586_SNP [dm3] X_9605553_SNP [dm6]	T	C	2.239e^-4	0.989	SYNONYMOUS_CODING Lst8 DOWNSTREAM Aats-lys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	10440451	3R_10440451_SNP [dm3] 3R_14614729_SNP [dm6]	C	T	2.251e^-4	0.989	INTRON CG14853
X	21947603	X_21947603_SNP [dm3] X_22545767_SNP [dm6]	A	T	2.252e^-4	0.989	INTERGENIC	transposable element FlyBase
3R	25871555	3R_25871555_SNP [dm3] 3R_30045833_SNP [dm6]	A	G	2.256e^-4	0.989	UPSTREAM CG7943 DOWNSTREAM Sry-delta INTRON RpL32	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3L	427267	3L_427267_SNP [dm3] 3L_427267_SNP [dm6]	T	C	2.258e^-4	0.989	INTERGENIC
3L	427269	3L_427269_SNP [dm3] 3L_427269_SNP [dm6]	A	T	2.258e^-4	0.989	INTERGENIC
3L	18267088	3L_18267088_INS [dm3] 3L_18273988_INS [dm6]	T	TT	2.273e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	6016871	2R_6016871_SNP [dm3] 2R_10129366_SNP [dm6]	T	C	2.291e^-4	0.989	INTRON gem
X	9499442	X_9499442_SNP [dm3] X_9605409_SNP [dm6]	C	T	2.292e^-4	0.989	SYNONYMOUS_CODING Lst8 DOWNSTREAM Aats-lys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	13473360	3R_13473360_SNP [dm3] 3R_17647638_SNP [dm6]	T	C	2.298e^-4	0.989	UPSTREAM CG14322 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9515311	2L_9515311_SNP [dm3] 2L_9515311_SNP [dm6]	T	C	2.304e^-4	0.989	SPLICE_SITE_REGION CG33298 INTRON CG33298
2L	6090501	2L_6090501_SNP [dm3] 2L_6090501_SNP [dm6]	C	T	2.304e^-4	0.989	UPSTREAM Kr-h1 & 1 other INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	13570318	3R_13570318_SNP [dm3] 3R_17744596_SNP [dm6]	C	A	2.307e^-4	0.989	INTRON TyrRII	TF binding site mE1_TFBS_cad
X	14167553	X_14167553_SNP [dm3] X_14273520_SNP [dm6]	C	T	2.309e^-4	0.989	INTRON na
2L	10636889	2L_10636889_SNP [dm3] 2L_10636889_SNP [dm6]	C	T	2.309e^-4	0.989	INTRON CG7329
2L	9011824	2L_9011824_SNP [dm3] 2L_9011824_SNP [dm6]	C	A	2.316e^-4	0.989	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
3L	14805972	3L_14805972_DEL [dm3] 3L_14812872_DEL [dm6]	GG	G	2.317e^-4	0.989	INTRON CG17839	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	20566729	3L_20566729_SNP [dm3] 3L_20573629_SNP [dm6]	A	T	2.322e^-4	0.989	INTERGENIC
X	18639590	X_18639590_SNP [dm3] X_18745557_SNP [dm6]	G	T	2.322e^-4	0.989	DOWNSTREAM CG12609 INTERGENIC	TF binding site mE1_TFBS_inv
3R	25562948	3R_25562948_SNP [dm3] 3R_29737226_SNP [dm6]	G	A	2.330e^-4	0.989	SYNONYMOUS_CODING CG7598 UPSTREAM CG7601	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Ubx
3L	7873988	3L_7873988_SNP [dm3] 3L_7880888_SNP [dm6]	G	A	2.333e^-4	0.989	INTRON CG32365
3L	9874048	3L_9874048_SNP [dm3] 3L_9880948_SNP [dm6]	A	G	2.336e^-4	0.989	INTRON CG34382	TF binding site mE1_TFBS_chinmo
3L	13990762	3L_13990762_SNP [dm3] 3L_13997662_SNP [dm6]	G	A	2.337e^-4	0.989	NON_SYNONYMOUS_CODING CG17361 DOWNSTREAM CG17359	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8391972	3L_8391972_SNP [dm3] 3L_8398872_SNP [dm6]	A	T	2.344e^-4	0.989	INTRON CG7120
3L	1103387	3L_1103387_SNP [dm3] 3L_1103387_SNP [dm6]	C	T	2.353e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	11834546	3R_11834546_SNP [dm3] 3R_16008824_SNP [dm6]	C	T	2.354e^-4	0.989	UPSTREAM CR42839 & 1 other INTERGENIC
X	20443347	X_20443347_INS [dm3] X_20572320_INS [dm6]	T	TT	2.360e^-4	0.989	INTERGENIC
3L	9201016	3L_9201016_SNP [dm3] 3L_9207916_SNP [dm6]	A	C	2.375e^-4	0.989	INTRON Slc45-1
3L	8391974	3L_8391974_SNP [dm3] 3L_8398874_SNP [dm6]	G	A	2.375e^-4	0.989	INTRON CG7120
2L	5560560	2L_5560560_SNP [dm3] 2L_5560560_SNP [dm6]	A	T	2.378e^-4	0.989	INTRON GluRIIB
3R	25688681	3R_25688681_SNP [dm3] 3R_29862959_SNP [dm6]	T	C	2.383e^-4	0.989	SYNONYMOUS_CODING RpS8 UPSTREAM snoRNA:Me28S-A2564 DOWNSTREAM Zip99C & 1 other	TF binding site mE1_TFBS_sens
X	12956239	X_12956239_SNP [dm3] X_13062206_SNP [dm6]	T	G	2.387e^-4	0.989	DOWNSTREAM mir-971 INTRON rad
3R	26963771	3R_26963771_SNP [dm3] 3R_31138049_SNP [dm6]	A	T	2.392e^-4	0.989	INTRON Gycbeta100B
2R	13000811	2R_13000811_SNP [dm3] 2R_17113306_SNP [dm6]	A	G	2.396e^-4	0.989	INTRON CG15611
X	5381199	X_5381199_SNP [dm3] X_5487166_SNP [dm6]	A	G	2.402e^-4	0.989	INTRON SPR	TF binding site mE1_TFBS_HSA
X	13020575	X_13020575_INS [dm3] X_13126542_INS [dm6]	T	TT	2.404e^-4	0.989	INTRON CG32638
3L	5461675	3L_5461675_SNP [dm3] 3L_5468575_SNP [dm6]	G	C	2.408e^-4	0.989	INTERGENIC
2R	15906348	2R_15906348_SNP [dm3] 2R_20018843_SNP [dm6]	G	A	2.436e^-4	0.989	INTERGENIC
2R	7945612	2R_7945612_INS [dm3] 2R_12058107_INS [dm6]	A	AA	2.436e^-4	0.989	INTRON Drep-3
3L	14814091	3L_14814091_SNP [dm3] 3L_14820991_SNP [dm6]	G	A	2.438e^-4	0.989	INTRON CG17839
3L	14814092	3L_14814092_SNP [dm3] 3L_14820992_SNP [dm6]	T	A	2.438e^-4	0.989	INTRON CG17839
X	14171256	X_14171256_SNP [dm3] X_14277223_SNP [dm6]	G	A	2.445e^-4	0.989	UTR_3_PRIME na UPSTREAM Muc12Ea DOWNSTREAM na
X	14756934	X_14756934_SNP [dm3] X_14862901_SNP [dm6]	T	G	2.449e^-4	0.989	DOWNSTREAM CG9518 INTRON Flo2
2R	13937301	2R_13937301_SNP [dm3] 2R_18049796_SNP [dm6]	G	A	2.450e^-4	0.989	UTR_5_PRIME CG14495 UPSTREAM CG14495 DOWNSTREAM CG34005 & 1 other
3R	10695773	3R_10695773_SNP [dm3] 3R_14870051_SNP [dm6]	T	A	2.453e^-4	0.989	INTRON btsz
3R	10695774	3R_10695774_SNP [dm3] 3R_14870052_SNP [dm6]	A	G	2.453e^-4	0.989	INTRON btsz
2R	9147034	2R_9147034_SNP [dm3] 2R_13259529_SNP [dm6]	G	T	2.459e^-4	0.989	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2L	9504688	2L_9504688_SNP [dm3] 2L_9504688_SNP [dm6]	G	A	2.464e^-4	0.989	SYNONYMOUS_CODING CG33298
X	5289896	X_5289896_SNP [dm3] X_5395863_SNP [dm6]	T	A	2.471e^-4	0.989	INTRON SK
3R	21823645	3R_21823645_SNP [dm3] 3R_25997923_SNP [dm6]	C	T	2.482e^-4	0.989	SYNONYMOUS_CODING E_spl_mdelta-HLH UPSTREAM CG43116	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
X	18252585	X_18252585_SNP [dm3] X_18358552_SNP [dm6]	C	A	2.485e^-4	0.989	UPSTREAM CG6106 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5801619	3L_5801619_SNP [dm3] 3L_5808519_SNP [dm6]	A	G	2.493e^-4	0.989	INTRON S6k	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	12821148	2R_12821148_SNP [dm3] 2R_16933643_SNP [dm6]	C	T	2.496e^-4	0.989	INTRON Pkc53E	TF binding site BDTNP1_TFBS_twi
3R	10441747	3R_10441747_SNP [dm3] 3R_14616025_SNP [dm6]	G	A	2.496e^-4	0.989	NON_SYNONYMOUS_CODING CG14853
2R	13242775	2R_13242775_SNP [dm3] 2R_17355270_SNP [dm6]	A	C	2.503e^-4	0.99	INTRON mbl
2L	5548755	2L_5548755_SNP [dm3] 2L_5548755_SNP [dm6]	T	C	2.511e^-4	0.99	UTR_3_PRIME Oscillin DOWNSTREAM CG14014 INTRON Oscillin
2L	402187	2L_402187_SNP [dm3] 2L_402187_SNP [dm6]	G	A	2.514e^-4	0.99	START_GAINED CG4213 UTR_5_PRIME CG4213 UPSTREAM CG4213	TF binding site mE1_TFBS_Trl
X	15135604	X_15135604_SNP [dm3] X_15241571_SNP [dm6]	G	T	2.519e^-4	0.99	INTERGENIC
X	6490536	X_6490536_SNP [dm3] X_6596503_SNP [dm6]	A	C	2.531e^-4	0.99	UTR_3_PRIME Pat1 UPSTREAM APC7
2L	7398022	2L_7398022_DEL [dm3] 2L_7398022_DEL [dm6]	CC	C	2.538e^-4	0.99	INTRON CG5160	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	17503358	2R_17503358_SNP [dm3] 2R_21615853_SNP [dm6]	T	C	2.546e^-4	0.99	SYNONYMOUS_CODING CG18870	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19656518	3R_19656518_SNP [dm3] 3R_23830796_SNP [dm6]	C	A	2.547e^-4	0.99	INTRON CG34355
3L	1103300	3L_1103300_SNP [dm3] 3L_1103300_SNP [dm6]	T	G	2.552e^-4	0.99	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	11327929	2R_11327929_SNP [dm3] 2R_15440424_SNP [dm6]	G	T	2.553e^-4	0.99	INTRON CG43729
3L	5503177	3L_5503177_SNP [dm3] 3L_5510077_SNP [dm6]	T	G	2.562e^-4	0.99	INTRON CG34342
3L	4534444	3L_4534444_SNP [dm3] 3L_4534444_SNP [dm6]	C	A	2.565e^-4	0.99	INTRON CG11353
2L	6752552	2L_6752552_SNP [dm3] 2L_6752552_SNP [dm6]	T	C	2.569e^-4	0.99	INTRON CG11221
X	5594395	X_5594395_SNP [dm3] X_5700362_SNP [dm6]	G	T	2.571e^-4	0.99	INTRON CG4096
3L	15206488	3L_15206488_SNP [dm3] 3L_15213388_SNP [dm6]	G	T	2.591e^-4	0.991	INTERGENIC
2L	19143020	2L_19143020_SNP [dm3] 2L_19143020_SNP [dm6]	G	T	2.591e^-4	0.991	INTRON brat	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5291698	X_5291698_SNP [dm3] X_5397665_SNP [dm6]	T	A	2.595e^-4	0.991	DOWNSTREAM SK INTRON SK
2R	12874125	2R_12874125_SNP [dm3] 2R_16986620_SNP [dm6]	T	C	2.601e^-4	0.991	SYNONYMOUS_CODING Cbp53E
3L	14389469	3L_14389469_SNP [dm3] 3L_14396369_SNP [dm6]	C	G	2.601e^-4	0.991	INTERGENIC
X	20443354	X_20443354_SNP [dm3] X_20572327_SNP [dm6]	C	T	2.614e^-4	0.993	INTERGENIC
3L	14813812	3L_14813812_SNP [dm3] 3L_14820712_SNP [dm6]	C	A	2.617e^-4	0.993	INTRON CG17839
X	6744997	X_6744997_SNP [dm3] X_6850964_SNP [dm6]	A	G	2.645e^-4	0.995	SYNONYMOUS_CODING CG4558 DOWNSTREAM CG14434	TF binding site mE1_TFBS_HSA
2R	7945675	2R_7945675_SNP [dm3] 2R_12058170_SNP [dm6]	A	G	2.652e^-4	0.995	INTRON Drep-3
X	4098987	X_4098987_SNP [dm3] X_4204954_SNP [dm6]	G	C	2.661e^-4	0.995	INTRON Fas2	TF binding site BDTNP1_TFBS_dl
3L	18662988	3L_18662988_INS [dm3] 3L_18669888_INS [dm6]	G	GCTG	2.662e^-4	0.995	CODON_INSERTION Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	6797806	2R_6797806_SNP [dm3] 2R_10910301_SNP [dm6]	T	C	2.669e^-4	0.995	NON_SYNONYMOUS_CODING Obp47a
2R	16344063	2R_16344063_SNP [dm3] 2R_20456558_SNP [dm6]	A	G	2.679e^-4	0.995	INTRON CG12484	TF binding site mE1_TFBS_inv
2L	6107179	2L_6107179_SNP [dm3] 2L_6107179_SNP [dm6]	A	T	2.685e^-4	0.995	INTRON stai
X	3051302	X_3051302_SNP [dm3] X_3157269_SNP [dm6]	G	T	2.692e^-4	0.995	INTRON N
2R	19719350	2R_19719350_SNP [dm3] 2R_23831827_SNP [dm6]	T	G	2.692e^-4	0.995	INTRON CG5549
2L	3997257	2L_3997257_INS [dm3] 2L_3997257_INS [dm6]	T	TGA	2.705e^-4	0.995	INTERGENIC
2R	17297680	2R_17297680_SNP [dm3] 2R_21410175_SNP [dm6]	A	C	2.711e^-4	0.995	INTRON Sdc
2L	19741420	2L_19741420_SNP [dm3] 2L_19741420_SNP [dm6]	C	G	2.711e^-4	0.995	EXON CR44906	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	6340303	2R_6340303_SNP [dm3] 2R_10452798_SNP [dm6]	G	A	2.712e^-4	0.995	UPSTREAM Cyp49a1 INTRON Galphao & 1 other
3R	12744630	3R_12744630_SNP [dm3] 3R_16918908_SNP [dm6]	G	A	2.717e^-4	0.995	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	18013873	2R_18013873_SNP [dm3] 2R_22126368_SNP [dm6]	T	C	2.721e^-4	0.995	SYNONYMOUS_CODING GM130	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9555119	3L_9555119_SNP [dm3] 3L_9562019_SNP [dm6]	C	T	2.721e^-4	0.995	INTRON CG42673
3L	7291366	3L_7291366_SNP [dm3] 3L_7298266_SNP [dm6]	G	C	2.723e^-4	0.995	INTRON unc-13-4A
2L	6850371	2L_6850371_SNP [dm3] 2L_6850371_SNP [dm6]	T	A	2.735e^-4	0.995	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	16344708	3L_16344708_SNP [dm3] 3L_16351608_SNP [dm6]	C	T	2.735e^-4	0.995	NON_SYNONYMOUS_CODING CG4925 UPSTREAM CG4933	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	11272369	3R_11272369_SNP [dm3] 3R_15446647_SNP [dm6]	C	A	2.735e^-4	0.995	INTRON AdamTS-A	TF binding site mE1_TFBS_cad
2R	9105661	2R_9105661_SNP [dm3] 2R_13218156_SNP [dm6]	A	G	2.753e^-4	0.995	UTR_5_PRIME CG4630	TF binding site mE1_TFBS_cad
3R	27272252	3R_27272252_SNP [dm3] 3R_31446530_SNP [dm6]	C	T	2.754e^-4	0.995	INTRON Gprk2
3R	5440336	3R_5440336_SNP [dm3] 3R_9614614_SNP [dm6]	C	T	2.757e^-4	0.995	INTRON CG8312
3R	14388983	3R_14388983_SNP [dm3] 3R_18563261_SNP [dm6]	T	A	2.762e^-4	0.995	INTERGENIC
2L	22310213	2L_22310213_SNP [dm3] 2L_22310213_SNP [dm6]	A	T	2.763e^-4	0.995	INTRON CG17018	transposable element FlyBase
X	16151446	X_16151446_SNP [dm3] X_16257413_SNP [dm6]	C	T	2.763e^-4	0.995	INTERGENIC
3L	10699904	3L_10699904_INS [dm3] 3L_10706804_INS [dm6]	A	AA	2.770e^-4	0.995	INTERGENIC
2R	4235523	2R_4235523_SNP [dm3] 2R_8348018_SNP [dm6]	C	T	2.771e^-4	0.995	SYNONYMOUS_CODING pdm3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5300928	2L_5300928_SNP [dm3] 2L_5300928_SNP [dm6]	T	C	2.781e^-4	0.997	INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	18909679	3R_18909679_SNP [dm3] 3R_23083957_SNP [dm6]	C	A	2.786e^-4	0.997	INTRON CG13830	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4578862	2L_4578862_SNP [dm3] 2L_4578862_SNP [dm6]	G	A	2.804e^-4	0.998	UPSTREAM HP6 INTRON dp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5548938	2L_5548938_SNP [dm3] 2L_5548938_SNP [dm6]	G	C	2.835e^-4	0.998	UTR_3_PRIME Oscillin DOWNSTREAM CG14014 INTRON Oscillin
2L	10660667	2L_10660667_SNP [dm3] 2L_10660667_SNP [dm6]	T	C	2.838e^-4	0.998	INTERGENIC
X	21876068	X_21876068_SNP [dm3] X_22474232_SNP [dm6]	G	C	2.840e^-4	0.998	SYNONYMOUS_CODING CG14618 DOWNSTREAM CG12576	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11852781	2L_11852781_SNP [dm3] 2L_11852781_SNP [dm6]	A	C	2.840e^-4	0.998	UTR_3_PRIME Mal-B2 UPSTREAM CG42751 DOWNSTREAM Mal-B2 INTRON Pde1c
X	5110498	X_5110498_SNP [dm3] X_5216465_SNP [dm6]	G	A	2.847e^-4	0.998	INTRON CG15465 & 1 other
3L	10096137	3L_10096137_SNP [dm3] 3L_10103037_SNP [dm6]	G	C	2.849e^-4	0.998	INTRON dpr6
X	19315420	X_19315420_DEL [dm3] X_19421387_DEL [dm6]	CATACATATATGTGT...	C	2.866e^-4	0.998	INTRON kek5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12587620	2R_12587620_SNP [dm3] 2R_16700115_SNP [dm6]	C	T	2.867e^-4	0.998	INTRON CG30463
2R	13920002	2R_13920002_SNP [dm3] 2R_18032497_SNP [dm6]	A	G	2.881e^-4	0.998	INTERGENIC
2L	7398079	2L_7398079_SNP [dm3] 2L_7398079_SNP [dm6]	A	T	2.884e^-4	0.998	INTRON CG5160	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	4098959	X_4098959_SNP [dm3] X_4204926_SNP [dm6]	C	T	2.890e^-4	0.998	INTRON Fas2	TF binding site BDTNP1_TFBS_dl
2L	13962825	2L_13962825_SNP [dm3] 2L_13962825_SNP [dm6]	T	A	2.897e^-4	0.998	UTR_3_PRIME NimA UPSTREAM NimB1
3L	9554632	3L_9554632_SNP [dm3] 3L_9561532_SNP [dm6]	G	A	2.897e^-4	0.998	INTRON CG42673
2L	9200493	2L_9200493_SNP [dm3] 2L_9200493_SNP [dm6]	A	G	2.911e^-4	0.998	INTRON tai
2R	16248235	2R_16248235_SNP [dm3] 2R_20360730_SNP [dm6]	C	G	2.911e^-4	0.998	INTERGENIC
X	14044781	X_14044781_SNP [dm3] X_14150748_SNP [dm6]	C	A	2.911e^-4	0.998	DOWNSTREAM CG12479 INTERGENIC
3L	10530001	3L_10530001_SNP [dm3] 3L_10536901_SNP [dm6]	T	A	2.938e^-4	0.998	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18796669	2R_18796669_SNP [dm3] 2R_22909146_SNP [dm6]	A	T	2.945e^-4	0.998	INTRON nahoda
X	13934374	X_13934374_SNP [dm3] X_14040341_SNP [dm6]	C	T	2.971e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12490102	2L_12490102_SNP [dm3] 2L_12490102_SNP [dm6]	A	G	2.974e^-4	0.998	INTRON bun
3L	9327178	3L_9327178_SNP [dm3] 3L_9334078_SNP [dm6]	G	T	2.987e^-4	0.998	UPSTREAM PGRP-LA INTERGENIC
2L	20018357	2L_20018357_DEL [dm3] 2L_20018357_DEL [dm6]	TCTAT	T	3.005e^-4	0.998	INTERGENIC
3L	18663271	3L_18663271_SNP [dm3] 3L_18670171_SNP [dm6]	T	C	3.008e^-4	0.998	SYNONYMOUS_CODING Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	10441975	3R_10441975_SNP [dm3] 3R_14616253_SNP [dm6]	C	T	3.015e^-4	0.998	INTRON CG14853
2L	5549917	2L_5549917_SNP [dm3] 2L_5549917_SNP [dm6]	C	A	3.022e^-4	0.998	SYNONYMOUS_CODING CG14014 DOWNSTREAM Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	9556615	2L_9556615_SNP [dm3] 2L_9556615_SNP [dm6]	C	T	3.023e^-4	0.998	INTRON jp
X	6489864	X_6489864_SNP [dm3] X_6595831_SNP [dm6]	G	C	3.029e^-4	0.998	UTR_3_PRIME Pat1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5543803	2L_5543803_SNP [dm3] 2L_5543803_SNP [dm6]	G	T	3.029e^-4	0.998	INTRON Lam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	8680415	X_8680415_SNP [dm3] X_8786382_SNP [dm6]	A	T	3.034e^-4	0.998	INTRON Lim1	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	16983323	3L_16983323_SNP [dm3] 3L_16990223_SNP [dm6]	A	G	3.036e^-4	0.998	INTRON Exn
3R	25395459	3R_25395459_INS [dm3] 3R_29569737_INS [dm6]	T	TT	3.042e^-4	0.998	INTERGENIC
3L	14400874	3L_14400874_INS [dm3] 3L_14407774_INS [dm6]	C	CCT	3.043e^-4	0.998	INTRON stwl	TF binding site BDTNP1_TFBS_dl
2R	6319568	2R_6319568_SNP [dm3] 2R_10432063_SNP [dm6]	A	T	3.047e^-4	0.998	INTRON RanBPM	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	14421261	3L_14421261_SNP [dm3] 3L_14428161_SNP [dm6]	G	C	3.049e^-4	0.998	UPSTREAM bbg INTRON bbg
3R	20298814	3R_20298814_SNP [dm3] 3R_24473092_SNP [dm6]	C	T	3.061e^-4	0.998	INTERGENIC
3R	24829701	3R_24829701_SNP [dm3] 3R_29003979_SNP [dm6]	C	G	3.069e^-4	0.998	INTRON wat
2R	7148344	2R_7148344_SNP [dm3] 2R_11260839_SNP [dm6]	G	A	3.072e^-4	0.998	UPSTREAM Cpr47Ec DOWNSTREAM Cpr47Ed INTERGENIC
3L	954676	3L_954676_SNP [dm3] 3L_954676_SNP [dm6]	T	G	3.075e^-4	0.998	INTRON Glut1
3L	21600208	3L_21600208_SNP [dm3] 3L_21607108_SNP [dm6]	T	G	3.085e^-4	0.998	INTRON TfAP-2
3L	15701020	3L_15701020_SNP [dm3] 3L_15707920_SNP [dm6]	G	T	3.091e^-4	0.998	INTERGENIC
2R	19578640	2R_19578640_SNP [dm3] 2R_23691117_SNP [dm6]	A	G	3.092e^-4	0.998	NON_SYNONYMOUS_CODING CG30183 DOWNSTREAM Pal2	TF binding site mE1_TFBS_cad
2L	7755258	2L_7755258_SNP [dm3] 2L_7755258_SNP [dm6]	A	C	3.101e^-4	0.998	UPSTREAM CG14538 INTRON CG7196
2R	7148345	2R_7148345_SNP [dm3] 2R_11260840_SNP [dm6]	C	T	3.105e^-4	0.998	UPSTREAM Cpr47Ec DOWNSTREAM Cpr47Ed INTERGENIC
X	13934383	X_13934383_DEL [dm3] X_14040350_DEL [dm6]	TT	T	3.117e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15135579	X_15135579_DEL [dm3] X_15241546_DEL [dm6]	ATA	A	3.119e^-4	0.998	INTERGENIC
X	13476075	X_13476075_SNP [dm3] X_13582042_SNP [dm6]	C	A	3.131e^-4	0.998	INTRON Tango13
3R	23271031	3R_23271031_SNP [dm3] 3R_27445309_SNP [dm6]	G	T	3.148e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13156683	2R_13156683_SNP [dm3] 2R_17269178_SNP [dm6]	T	C	3.150e^-4	0.998	INTRON mbl	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run
3R	25226172	3R_25226172_DEL [dm3] 3R_29400450_DEL [dm6]	ATTAAGTATCAA...	A	3.151e^-4	0.998	INTRON Ptp99A
3R	26671686	3R_26671686_SNP [dm3] 3R_30845964_SNP [dm6]	T	A	3.156e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	5557570	2L_5557570_SNP [dm3] 2L_5557570_SNP [dm6]	T	A	3.167e^-4	0.998	INTRON GluRIIA
X	14539769	X_14539769_SNP [dm3] X_14645736_SNP [dm6]	C	T	3.168e^-4	0.998	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21947765	X_21947765_SNP [dm3] X_22545929_SNP [dm6]	C	T	3.169e^-4	0.998	INTERGENIC
3L	9554635	3L_9554635_SNP [dm3] 3L_9561535_SNP [dm6]	A	T	3.175e^-4	0.998	INTRON CG42673
3L	4677708	3L_4677708_SNP [dm3] 3L_4677708_SNP [dm6]	G	A	3.179e^-4	0.998	UPSTREAM CG34266 INTRON axo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7293045	3R_7293045_SNP [dm3] 3R_11467323_SNP [dm6]	G	A	3.180e^-4	0.998	UTR_3_PRIME CG17230
2R	16253813	2R_16253813_INS [dm3] 2R_20366308_INS [dm6]	A	ACA	3.184e^-4	0.998	INTERGENIC
2R	20691135	2R_20691135_DEL [dm3] 2R_24803612_DEL [dm6]	CC	C	3.194e^-4	0.998	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	20397375	X_20397375_DEL [dm3] X_20526348_DEL [dm6]	TT	T	3.198e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	20752645	3L_20752645_SNP [dm3] 3L_20759545_SNP [dm6]	A	G	3.203e^-4	0.998	DOWNSTREAM CG43251 INTERGENIC
3L	9201008	3L_9201008_SNP [dm3] 3L_9207908_SNP [dm6]	T	A	3.209e^-4	0.998	INTRON Slc45-1
3R	13657464	3R_13657464_DEL [dm3] 3R_17831742_DEL [dm6]	TTGATA	T	3.210e^-4	0.998	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	26257987	3R_26257987_SNP [dm3] 3R_30432265_SNP [dm6]	G	A	3.214e^-4	0.998	DOWNSTREAM CG15533 INTRON CG15534	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10264888	3L_10264888_SNP [dm3] 3L_10271788_SNP [dm6]	C	A	3.221e^-4	0.998	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11251263	2R_11251263_SNP [dm3] 2R_15363758_SNP [dm6]	T	A	3.235e^-4	0.998	INTRON unc-5
X	11148009	X_11148009_SNP [dm3] X_11253976_SNP [dm6]	C	T	3.249e^-4	0.998	INTRON CG44422
2L	291856	2L_291856_SNP [dm3] 2L_291856_SNP [dm6]	G	A	3.255e^-4	0.998	UPSTREAM CG11562 & 1 other INTERGENIC
2R	15838836	2R_15838836_SNP [dm3] 2R_19951331_SNP [dm6]	G	C	3.272e^-4	0.998	UPSTREAM CG10822 INTERGENIC
3L	1866893	3L_1866893_SNP [dm3] 3L_1866893_SNP [dm6]	T	G	3.278e^-4	0.998	INTRON CG12025	TF binding site BDTNP1_TFBS_twi
2L	12738529	2L_12738529_SNP [dm3] 2L_12738529_SNP [dm6]	A	C	3.293e^-4	0.998	SYNONYMOUS_CODING MRP	TF binding site mE1_TFBS_cad
3L	4545922	3L_4545922_SNP [dm3] 3L_4545922_SNP [dm6]	G	A	3.299e^-4	0.998	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	19362717	3R_19362717_SNP [dm3] 3R_23536995_SNP [dm6]	G	A	3.306e^-4	0.998	UTR_3_PRIME CG10168 UPSTREAM CG16732
2L	21906167	2L_21906167_SNP [dm3] 2L_21906167_SNP [dm6]	A	T	3.307e^-4	0.998	UPSTREAM CG1428 INTERGENIC
3L	12088010	3L_12088010_SNP [dm3] 3L_12094910_SNP [dm6]	G	A	3.312e^-4	0.998	INTERGENIC
3L	4862565	3L_4862565_DEL [dm3] 3L_4862565_DEL [dm6]	AATATATG	A	3.328e^-4	0.998	INTRON CG17150
3L	6100247	3L_6100247_SNP [dm3] 3L_6107147_SNP [dm6]	C	T	3.334e^-4	0.998	INTRON Ets65A	TF binding site mE1_TFBS_cad
X	9814443	X_9814443_SNP [dm3] X_9920410_SNP [dm6]	C	T	3.340e^-4	0.998	INTERGENIC
3R	25226879	3R_25226879_SNP [dm3] 3R_29401157_SNP [dm6]	A	C	3.350e^-4	0.998	INTRON Ptp99A	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	9441548	X_9441548_SNP [dm3] X_9547515_SNP [dm6]	T	G	3.354e^-4	0.998	INTRON CG32700
3R	15317387	3R_15317387_SNP [dm3] 3R_19491665_SNP [dm6]	A	T	3.356e^-4	0.998	UPSTREAM CG15025 INTRON Dys	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	8360568	2R_8360568_SNP [dm3] 2R_12473063_SNP [dm6]	A	G	3.392e^-4	0.998	SYNONYMOUS_CODING CG8550
3R	25871557	3R_25871557_SNP [dm3] 3R_30045835_SNP [dm6]	A	T	3.392e^-4	0.998	UPSTREAM CG7943 DOWNSTREAM Sry-delta INTRON RpL32	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3R	25871560	3R_25871560_SNP [dm3] 3R_30045838_SNP [dm6]	T	A	3.392e^-4	0.998	UPSTREAM CG7943 DOWNSTREAM Sry-delta INTRON RpL32	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
X	19401915	X_19401915_SNP [dm3] X_19507882_SNP [dm6]	C	T	3.394e^-4	0.998	SYNONYMOUS_CODING Pfrx INTRON CG14200	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1966238	2L_1966238_SNP [dm3] 2L_1966238_SNP [dm6]	C	T	3.411e^-4	0.998	DOWNSTREAM tRNA:CR31942 INTRON erm	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3923979	X_3923979_SNP [dm3] X_4029946_SNP [dm6]	A	T	3.411e^-4	0.998	INTERGENIC
2R	6567949	2R_6567949_SNP [dm3] 2R_10680444_SNP [dm6]	A	C	3.414e^-4	0.998	INTRON stan	TF binding site mE1_TFBS_Trl
3L	8906746	3L_8906746_INS [dm3] 3L_8913646_INS [dm6]	T	TGT	3.416e^-4	0.998	UPSTREAM mfr INTRON Tsp66E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	1945327	2L_1945327_SNP [dm3] 2L_1945327_SNP [dm6]	C	T	3.421e^-4	0.998	NON_SYNONYMOUS_CODING CG15357 DOWNSTREAM CG33673
3L	9202508	3L_9202508_SNP [dm3] 3L_9209408_SNP [dm6]	T	C	3.430e^-4	0.998	UPSTREAM Slc45-1 INTERGENIC
3L	17784937	3L_17784937_SNP [dm3] 3L_17791837_SNP [dm6]	C	A	3.430e^-4	0.998	UPSTREAM CG42815 DOWNSTREAM CG42816 INTERGENIC
2L	13605161	2L_13605161_SNP [dm3] 2L_13605161_SNP [dm6]	T	A	3.435e^-4	0.998	INTRON kuz
3L	10093742	3L_10093742_SNP [dm3] 3L_10100642_SNP [dm6]	T	G	3.435e^-4	0.998	SYNONYMOUS_CODING CG42826 INTRON dpr6
3L	11132561	3L_11132561_SNP [dm3] 3L_11139461_SNP [dm6]	G	C	3.436e^-4	0.998	INTRON CG32082
2R	9775436	2R_9775436_SNP [dm3] 2R_13887931_SNP [dm6]	G	A	3.447e^-4	0.998	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17060713	2R_17060713_SNP [dm3] 2R_21173208_SNP [dm6]	C	T	3.447e^-4	0.998	INTRON Xpd	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9129050	2L_9129050_SNP [dm3] 2L_9129050_SNP [dm6]	G	A	3.450e^-4	0.998	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8409015	3R_8409015_SNP [dm3] 3R_12583293_SNP [dm6]	T	G	3.459e^-4	0.998	INTRON Octbeta2R
2L	3796978	2L_3796978_SNP [dm3] 2L_3796978_SNP [dm6]	C	T	3.459e^-4	0.998	SYNONYMOUS_CODING CG3921
2R	13242903	2R_13242903_SNP [dm3] 2R_17355398_SNP [dm6]	G	A	3.460e^-4	0.998	INTRON mbl
3L	14812640	3L_14812640_SNP [dm3] 3L_14819540_SNP [dm6]	G	A	3.467e^-4	0.998	INTRON CG17839
2R	6015381	2R_6015381_INS [dm3] 2R_10127876_INS [dm6]	C	TT	3.470e^-4	0.998	INTRON gem	TF binding site BDTNP1_TFBS_dl
2R	13920092	2R_13920092_SNP [dm3] 2R_18032587_SNP [dm6]	C	T	3.477e^-4	0.998	INTERGENIC
X	8156894	X_8156894_INS [dm3] X_8262861_INS [dm6]	T	TTCCACGCTCCGAACCAAAT...	3.488e^-4	0.998	INTRON CG1632	TF binding site BDTNP1_TFBS_da
3R	19243589	3R_19243589_SNP [dm3] 3R_23417867_SNP [dm6]	G	A	3.492e^-4	0.998	INTRON CG4374
2R	6797789	2R_6797789_SNP [dm3] 2R_10910284_SNP [dm6]	C	A	3.494e^-4	0.998	NON_SYNONYMOUS_CODING Obp47a
3R	26963749	3R_26963749_SNP [dm3] 3R_31138027_SNP [dm6]	T	C	3.497e^-4	0.998	INTRON Gycbeta100B
3R	14623497	3R_14623497_SNP [dm3] 3R_18797775_SNP [dm6]	A	T	3.498e^-4	0.998	INTERGENIC
X	8246368	X_8246368_SNP [dm3] X_8352335_SNP [dm6]	A	G	3.503e^-4	0.998	INTRON nAChRalpha3
2R	9147026	2R_9147026_SNP [dm3] 2R_13259521_SNP [dm6]	T	A	3.507e^-4	0.998	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2L	18741058	2L_18741058_SNP [dm3] 2L_18741058_SNP [dm6]	C	T	3.532e^-4	0.998	UPSTREAM CG42752 DOWNSTREAM CG15167 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	4838825	3L_4838825_SNP [dm3] 3L_4838825_SNP [dm6]	A	G	3.537e^-4	0.998	UTR_5_PRIME CG13707 INTRON CG13707
3L	4838899	3L_4838899_SNP [dm3] 3L_4838899_SNP [dm6]	G	A	3.537e^-4	0.998	INTRON CG13707
2L	1136458	2L_1136458_SNP [dm3] 2L_1136458_SNP [dm6]	T	G	3.539e^-4	0.998	INTRON CG4577
3L	14813565	3L_14813565_SNP [dm3] 3L_14820465_SNP [dm6]	G	A	3.545e^-4	0.998	INTRON CG17839
2R	12035551	2R_12035551_SNP [dm3] 2R_16148046_SNP [dm6]	G	A	3.548e^-4	0.998	SYNONYMOUS_CODING Ext2 DOWNSTREAM CG10731	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9202567	3L_9202567_SNP [dm3] 3L_9209467_SNP [dm6]	T	C	3.565e^-4	0.998	UPSTREAM Slc45-1 INTERGENIC
2R	9466382	2R_9466382_SNP [dm3] 2R_13578877_SNP [dm6]	G	T	3.567e^-4	0.998	EXON CR44366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18047718	2R_18047718_SNP [dm3] 2R_22160213_SNP [dm6]	C	G	3.570e^-4	0.998	INTRON a	TF binding site mE1_TFBS_chinmo
3R	27129265	3R_27129265_SNP [dm3] 3R_31303543_SNP [dm6]	T	C	3.575e^-4	0.998	SYNONYMOUS_CODING CG11340	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17618692	2R_17618692_DEL [dm3] 2R_21731187_DEL [dm6]	AT	A	3.576e^-4	0.998	INTERGENIC
2R	4603032	2R_4603032_SNP [dm3] 2R_8715527_SNP [dm6]	T	G	3.583e^-4	0.998	DOWNSTREAM PGRP-SC1b INTERGENIC	TF binding site mE1_TFBS_zfh1
X	20727078	X_20727078_SNP [dm3] X_20856051_SNP [dm6]	A	C	3.584e^-4	0.998	INTRON shakB
2L	5560553	2L_5560553_SNP [dm3] 2L_5560553_SNP [dm6]	A	G	3.591e^-4	0.998	INTRON GluRIIB
3R	24421845	3R_24421845_SNP [dm3] 3R_28596123_SNP [dm6]	T	G	3.609e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9967352	2R_9967352_SNP [dm3] 2R_14079847_SNP [dm6]	G	A	3.617e^-4	0.998	INTRON Prosap
3L	14807384	3L_14807384_SNP [dm3] 3L_14814284_SNP [dm6]	C	T	3.619e^-4	0.998	INTRON CG17839
X	5290172	X_5290172_SNP [dm3] X_5396139_SNP [dm6]	G	A	3.625e^-4	0.998	INTRON SK
3R	26596006	3R_26596006_SNP [dm3] 3R_30770284_SNP [dm6]	G	A	3.635e^-4	0.998	INTRON zfh1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	851292	2L_851292_DEL [dm3] 2L_851292_DEL [dm6]	AATA	A	3.642e^-4	0.998	UTR_3_PRIME CG4291 UPSTREAM drongo DOWNSTREAM CG4291 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h
2L	13719417	2L_13719417_SNP [dm3] 2L_13719417_SNP [dm6]	T	A	3.656e^-4	0.998	INTERGENIC
2L	19735398	2L_19735398_SNP [dm3] 2L_19735398_SNP [dm6]	G	A	3.668e^-4	0.998	UPSTREAM Nf-YB INTRON CG10462	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13238727	2R_13238727_SNP [dm3] 2R_17351222_SNP [dm6]	C	T	3.669e^-4	0.998	SYNONYMOUS_CODING mbl
X	2434579	X_2434579_SNP [dm3] X_2540546_SNP [dm6]	C	T	3.672e^-4	0.998	INTRON trol
X	3208982	X_3208982_SNP [dm3] X_3314949_SNP [dm6]	C	T	3.675e^-4	0.998	SYNONYMOUS_CODING CG10793 INTRON dnc & 1 other
2L	4969233	2L_4969233_SNP [dm3] 2L_4969233_SNP [dm6]	C	T	3.677e^-4	0.998	UPSTREAM Scox DOWNSTREAM l_2_05714 INTRON CG3756	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	10440314	3R_10440314_SNP [dm3] 3R_14614592_SNP [dm6]	C	T	3.678e^-4	0.998	INTRON CG14853
X	17711950	X_17711950_SNP [dm3] X_17817917_SNP [dm6]	A	T	3.699e^-4	0.998	INTERGENIC
3R	5145048	3R_5145048_SNP [dm3] 3R_9319326_SNP [dm6]	G	A	3.702e^-4	0.998	INTRON CG8861
3L	3845693	3L_3845693_SNP [dm3] 3L_3845693_SNP [dm6]	T	C	3.705e^-4	0.998	UPSTREAM Awh INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	8156849	X_8156849_SNP [dm3] X_8262816_SNP [dm6]	T	C	3.706e^-4	0.998	INTRON CG1632	TF binding site BDTNP1_TFBS_da
X	6453447	X_6453447_SNP [dm3] X_6559414_SNP [dm6]	G	A	3.721e^-4	0.998	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_inv
2L	10176696	2L_10176696_SNP [dm3] 2L_10176696_SNP [dm6]	G	A	3.732e^-4	0.998	INTRON CG44153
2L	2526335	2L_2526335_SNP [dm3] 2L_2526335_SNP [dm6]	C	T	3.733e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_cad
X	14182721	X_14182721_SNP [dm3] X_14288688_SNP [dm6]	A	T	3.735e^-4	0.998	DOWNSTREAM Muc12Ea INTRON CG9400	TF binding site mE1_TFBS_HSA
3R	4359586	3R_4359586_SNP [dm3] 3R_8533864_SNP [dm6]	A	G	3.744e^-4	0.998	INTERGENIC
2R	13242965	2R_13242965_SNP [dm3] 2R_17355460_SNP [dm6]	A	T	3.753e^-4	0.998	INTRON mbl
2R	18362978	2R_18362978_SNP [dm3] 2R_22475473_SNP [dm6]	T	C	3.754e^-4	0.998	SYNONYMOUS_CODING CG45062 DOWNSTREAM CG45063	TF binding site mE1_TFBS_chinmo
3L	3657121	3L_3657121_SNP [dm3] 3L_3657121_SNP [dm6]	G	T	3.778e^-4	0.998	INTERGENIC
2R	19411371	2R_19411371_SNP [dm3] 2R_23523848_SNP [dm6]	T	G	3.783e^-4	0.998	UPSTREAM mi & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
X	14840680	X_14840680_SNP [dm3] X_14946647_SNP [dm6]	C	A	3.786e^-4	0.998	INTRON pdgy
3L	18173314	3L_18173314_SNP [dm3] 3L_18180214_SNP [dm6]	A	C	3.794e^-4	0.998	INTRON W
X	14768940	X_14768940_SNP [dm3] X_14874907_SNP [dm6]	T	C	3.807e^-4	0.998	DOWNSTREAM CG45065 & 1 other INTRON Flo2
2L	5198265	2L_5198265_SNP [dm3] 2L_5198265_SNP [dm6]	C	T	3.818e^-4	0.998	INTRON Msp300	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26599159	3R_26599159_SNP [dm3] 3R_30773437_SNP [dm6]	C	T	3.822e^-4	0.998	INTRON zfh1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	1677635	2L_1677635_SNP [dm3] 2L_1677635_SNP [dm6]	T	A	3.826e^-4	0.998	INTRON chinmo
3L	15684480	3L_15684480_SNP [dm3] 3L_15691380_SNP [dm6]	C	A	3.830e^-4	0.998	INTRON CG34451	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	8486852	3R_8486852_SNP [dm3] 3R_12661130_SNP [dm6]	C	T	3.834e^-4	0.998	DOWNSTREAM CR45586 & 1 other INTERGENIC
3L	11034764	3L_11034764_SNP [dm3] 3L_11041664_SNP [dm6]	A	C	3.854e^-4	0.998	INTRON CG43693	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
X	21947679	X_21947679_SNP [dm3] X_22545843_SNP [dm6]	A	T	3.875e^-4	0.998	INTERGENIC
X	21947178	X_21947178_SNP [dm3] X_22545342_SNP [dm6]	A	T	3.878e^-4	0.998	INTERGENIC	transposable element FlyBase
2L	5165835	2L_5165835_SNP [dm3] 2L_5165835_SNP [dm6]	A	T	3.887e^-4	0.998	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	1120707	2L_1120707_SNP [dm3] 2L_1120707_SNP [dm6]	G	A	3.895e^-4	0.998	INTRON Pino	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10440184	3R_10440184_SNP [dm3] 3R_14614462_SNP [dm6]	T	C	3.904e^-4	0.998	INTRON CG14853
X	21948890	X_21948890_SNP [dm3] X_22547054_SNP [dm6]	C	G	3.924e^-4	0.998	UPSTREAM CG17601 INTERGENIC
3L	10081547	3L_10081547_SNP [dm3] 3L_10088447_SNP [dm6]	C	T	3.931e^-4	0.998	INTRON dpr6 & 1 other
3L	10096445	3L_10096445_SNP [dm3] 3L_10103345_SNP [dm6]	A	G	3.935e^-4	0.998	INTRON dpr6
3R	12563180	3R_12563180_SNP [dm3] 3R_16737458_SNP [dm6]	A	G	3.942e^-4	0.998	INTERGENIC	regulatory region REDfly_CRMs
2R	13242799	2R_13242799_SNP [dm3] 2R_17355294_SNP [dm6]	T	G	3.946e^-4	0.998	INTRON mbl
3R	14854435	3R_14854435_SNP [dm3] 3R_19028713_SNP [dm6]	G	A	3.946e^-4	0.998	UPSTREAM P5cr DOWNSTREAM NP15.6 INTRON gatA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9999388	3L_9999388_SNP [dm3] 3L_10006288_SNP [dm6]	C	T	3.974e^-4	0.998	INTRON dpr6
3R	17683340	3R_17683340_SNP [dm3] 3R_21857618_SNP [dm6]	G	A	3.974e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	4144996	2L_4144996_SNP [dm3] 2L_4144996_SNP [dm6]	T	C	3.978e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14388987	3R_14388987_SNP [dm3] 3R_18563265_SNP [dm6]	C	T	3.983e^-4	0.998	DOWNSTREAM CG43210 & 1 other INTERGENIC
2R	13364779	2R_13364779_SNP [dm3] 2R_17477274_SNP [dm6]	A	T	3.988e^-4	0.998	UPSTREAM veil DOWNSTREAM CG43110 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
X	14167632	X_14167632_SNP [dm3] X_14273599_SNP [dm6]	G	T	3.998e^-4	0.998	INTRON na	TF binding site mE1_TFBS_inv
3L	5886015	3L_5886015_SNP [dm3] 3L_5892915_SNP [dm6]	C	G	4.006e^-4	0.998	INTERGENIC
2L	1974874	2L_1974874_SNP [dm3] 2L_1974874_SNP [dm6]	G	C	4.009e^-4	0.998	SPLICE_SITE_REGION Der-1 DOWNSTREAM CG15356 INTRON Der-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	5476907	3R_5476907_SNP [dm3] 3R_9651185_SNP [dm6]	T	G	4.011e^-4	0.998	UTR_3_PRIME CG9492 DOWNSTREAM Dh44
3R	25758849	3R_25758849_SNP [dm3] 3R_29933127_SNP [dm6]	T	A	4.013e^-4	0.998	UPSTREAM CG42557 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	6100265	3L_6100265_SNP [dm3] 3L_6107165_SNP [dm6]	C	T	4.016e^-4	0.998	INTRON Ets65A	TF binding site mE1_TFBS_cad
2L	9486651	2L_9486651_SNP [dm3] 2L_9486651_SNP [dm6]	A	G	4.024e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	12021978	X_12021978_SNP [dm3] X_12127945_SNP [dm6]	A	G	4.033e^-4	0.998	UPSTREAM Ten-a INTRON Ten-a
2R	11855147	2R_11855147_SNP [dm3] 2R_15967642_SNP [dm6]	A	G	4.035e^-4	0.998	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2L	5165853	2L_5165853_SNP [dm3] 2L_5165853_SNP [dm6]	C	T	4.036e^-4	0.998	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2R	6014808	2R_6014808_SNP [dm3] 2R_10127303_SNP [dm6]	T	A	4.037e^-4	0.998	NON_SYNONYMOUS_CODING gem
2L	588252	2L_588252_SNP [dm3] 2L_588252_SNP [dm6]	C	A	4.040e^-4	0.998	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16828385	3R_16828385_SNP [dm3] 3R_21002663_SNP [dm6]	T	C	4.042e^-4	0.998	INTRON Calx
3L	1740510	3L_1740510_SNP [dm3] 3L_1740510_SNP [dm6]	C	A	4.054e^-4	0.998	INTRON Gk
2R	11177864	2R_11177864_SNP [dm3] 2R_15290359_SNP [dm6]	A	G	4.056e^-4	0.998	INTRON Trpm
2R	11726052	2R_11726052_SNP [dm3] 2R_15838547_SNP [dm6]	C	T	4.067e^-4	0.998	INTRON tun	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_Trl
2R	13415564	2R_13415564_SNP [dm3] 2R_17528059_SNP [dm6]	G	A	4.072e^-4	0.998	SYNONYMOUS_CODING Patronin
2L	5167718	2L_5167718_SNP [dm3] 2L_5167718_SNP [dm6]	C	T	4.072e^-4	0.998	SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	18712002	3L_18712002_SNP [dm3] 3L_18718902_SNP [dm6]	A	T	4.083e^-4	0.998	INTERGENIC
3R	23587733	3R_23587733_SNP [dm3] 3R_27762011_SNP [dm6]	A	G	4.085e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	9199268	3L_9199268_SNP [dm3] 3L_9206168_SNP [dm6]	T	C	4.111e^-4	0.998	INTRON Slc45-1
2R	13932329	2R_13932329_SNP [dm3] 2R_18044824_SNP [dm6]	A	G	4.111e^-4	0.998	SYNONYMOUS_CODING CG5770
2L	3752133	2L_3752133_SNP [dm3] 2L_3752133_SNP [dm6]	A	G	4.118e^-4	0.998	SYNONYMOUS_CODING CG10019
3R	14660016	3R_14660016_SNP [dm3] 3R_18834294_SNP [dm6]	G	A	4.127e^-4	0.998	INTRON CG18208
2R	17708493	2R_17708493_SNP [dm3] 2R_21820988_SNP [dm6]	T	G	4.179e^-4	0.998	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	21175942	3L_21175942_SNP [dm3] 3L_21182842_SNP [dm6]	C	T	4.186e^-4	0.998	UTR_3_PRIME chb DOWNSTREAM CG42337
2L	6520956	2L_6520956_SNP [dm3] 2L_6520956_SNP [dm6]	T	C	4.192e^-4	0.998	INTRON CG31637
3L	7601186	3L_7601186_SNP [dm3] 3L_7608086_SNP [dm6]	T	C	4.200e^-4	0.998	INTRON CG33275	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6534977	X_6534977_SNP [dm3] X_6640944_SNP [dm6]	C	A	4.212e^-4	0.998	INTRON pigs
3R	26021684	3R_26021684_SNP [dm3] 3R_30195962_SNP [dm6]	G	A	4.218e^-4	0.998	DOWNSTREAM CG9743 INTRON CG15531
3R	8478724	3R_8478724_SNP [dm3] 3R_12653002_SNP [dm6]	C	T	4.223e^-4	0.998	DOWNSTREAM Dtg INTERGENIC
2L	590537	2L_590537_SNP [dm3] 2L_590537_SNP [dm6]	G	C	4.225e^-4	0.998	INTRON Gsc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	18930613	3R_18930613_SNP [dm3] 3R_23104891_SNP [dm6]	T	C	4.245e^-4	0.998	INTRON CG13830
3L	10691485	3L_10691485_SNP [dm3] 3L_10698385_SNP [dm6]	T	G	4.246e^-4	0.998	INTERGENIC
3L	8546733	3L_8546733_SNP [dm3] 3L_8553633_SNP [dm6]	G	A	4.248e^-4	0.998	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1974807	2L_1974807_SNP [dm3] 2L_1974807_SNP [dm6]	T	C	4.260e^-4	0.998	SYNONYMOUS_CODING Der-1 DOWNSTREAM CG15356	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	17440937	X_17440937_SNP [dm3] X_17546904_SNP [dm6]	A	C	4.263e^-4	0.998	INTRON CG43658
3L	9326116	3L_9326116_SNP [dm3] 3L_9333016_SNP [dm6]	G	A	4.267e^-4	0.998	INTERGENIC
3R	8477135	3R_8477135_SNP [dm3] 3R_12651413_SNP [dm6]	A	G	4.276e^-4	0.998	SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_sens
3L	1689872	3L_1689872_SNP [dm3] 3L_1689872_SNP [dm6]	C	G	4.300e^-4	0.998	INTRON CG7991
2L	7041785	2L_7041785_DEL [dm3] 2L_7041785_DEL [dm6]	GTCG	A	4.303e^-4	0.998	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26476642	3R_26476642_SNP [dm3] 3R_30650920_SNP [dm6]	C	T	4.309e^-4	0.998	DOWNSTREAM CG34433 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10763544	3L_10763544_SNP [dm3] 3L_10770444_SNP [dm6]	T	C	4.318e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	8156863	X_8156863_SNP [dm3] X_8262830_SNP [dm6]	T	C	4.318e^-4	0.998	INTRON CG1632	TF binding site BDTNP1_TFBS_da
2L	4144474	2L_4144474_SNP [dm3] 2L_4144474_SNP [dm6]	C	T	4.319e^-4	0.998	INTERGENIC
3L	10094759	3L_10094759_SNP [dm3] 3L_10101659_SNP [dm6]	T	A	4.319e^-4	0.998	UPSTREAM CG42826 INTRON dpr6
3R	24847183	3R_24847183_SNP [dm3] 3R_29021461_SNP [dm6]	A	T	4.320e^-4	0.998	EXON CR44264
3L	3185989	3L_3185989_DEL [dm3] 3L_3185989_DEL [dm6]	AGACTA	A	4.322e^-4	0.998	UPSTREAM CG32284 DOWNSTREAM Girdin INTRON CG42494
3R	13279793	3R_13279793_SNP [dm3] 3R_17454071_SNP [dm6]	T	G	4.329e^-4	0.998	INTERGENIC
X	15422778	X_15422778_SNP [dm3] X_15528745_SNP [dm6]	T	A	4.330e^-4	0.998	INTRON Ac13E
3R	13175133	3R_13175133_SNP [dm3] 3R_17349411_SNP [dm6]	A	C	4.333e^-4	0.998	INTRON beat-IIa
X	16687145	X_16687145_SNP [dm3] X_16793112_SNP [dm6]	T	A	4.337e^-4	0.998	INTRON CG4768	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3R	19418519	3R_19418519_SNP [dm3] 3R_23592797_SNP [dm6]	A	T	4.337e^-4	0.998	UPSTREAM CG33337 DOWNSTREAM CG16723 INTERGENIC
2L	17490524	2L_17490524_SNP [dm3] 2L_17490524_SNP [dm6]	C	A	4.339e^-4	0.998	INTRON qua
2L	14031895	2L_14031895_SNP [dm3] 2L_14031895_SNP [dm6]	T	C	4.340e^-4	0.998	UPSTREAM CG18095 DOWNSTREAM CR45284 INTERGENIC
2L	3348315	2L_3348315_SNP [dm3] 2L_3348315_SNP [dm6]	A	G	4.347e^-4	0.998	INTRON E23
3L	7480613	3L_7480613_SNP [dm3] 3L_7487513_SNP [dm6]	A	G	4.348e^-4	0.998	INTRON mthl6
3L	1604227	3L_1604227_SNP [dm3] 3L_1604227_SNP [dm6]	A	T	4.351e^-4	0.998	NON_SYNONYMOUS_CODING CG18170 UTR_5_PRIME CG33791 UPSTREAM CG33791
3L	1604231	3L_1604231_SNP [dm3] 3L_1604231_SNP [dm6]	G	A	4.351e^-4	0.998	SYNONYMOUS_CODING CG18170 UTR_5_PRIME CG33791 UPSTREAM CG33791
2L	1460951	2L_1460951_SNP [dm3] 2L_1460951_SNP [dm6]	T	A	4.358e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	8477618	3R_8477618_SNP [dm3] 3R_12651896_SNP [dm6]	A	T	4.358e^-4	0.998	NON_SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8477697	3R_8477697_SNP [dm3] 3R_12651975_SNP [dm6]	C	A	4.358e^-4	0.998	NON_SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_sens
3R	8477725	3R_8477725_SNP [dm3] 3R_12652003_SNP [dm6]	A	C	4.358e^-4	0.998	NON_SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_sens
2R	17593717	2R_17593717_SNP [dm3] 2R_21706212_SNP [dm6]	G	A	4.362e^-4	0.998	INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	12021975	X_12021975_SNP [dm3] X_12127942_SNP [dm6]	G	A	4.363e^-4	0.998	UPSTREAM Ten-a INTRON Ten-a
2R	6016874	2R_6016874_SNP [dm3] 2R_10129369_SNP [dm6]	G	T	4.405e^-4	0.998	INTRON gem
X	10448953	X_10448953_SNP [dm3] X_10554920_SNP [dm6]	A	G	4.407e^-4	0.998	INTRON spri
X	12437067	X_12437067_SNP [dm3] X_12543034_SNP [dm6]	T	A	4.411e^-4	0.998	INTRON CG43921
2L	14850585	2L_14850585_SNP [dm3] 2L_14850585_SNP [dm6]	G	C	4.414e^-4	0.998	INTRON CG15279
3L	20924804	3L_20924804_SNP [dm3] 3L_20931704_SNP [dm6]	T	C	4.417e^-4	0.998	INTRON fng	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3158647	X_3158647_SNP [dm3] X_3264614_SNP [dm6]	G	C	4.427e^-4	0.998	INTRON dnc
3L	9328035	3L_9328035_SNP [dm3] 3L_9334935_SNP [dm6]	C	G	4.428e^-4	0.998	SPLICE_SITE_REGION PGRP-LA UPSTREAM PGRP-LA INTRON PGRP-LA
2L	6226800	2L_6226800_SNP [dm3] 2L_6226800_SNP [dm6]	T	A	4.442e^-4	0.998	UTR_3_PRIME Ugt37b1
2R	15916888	2R_15916888_SNP [dm3] 2R_20029383_SNP [dm6]	A	G	4.446e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
X	16054758	X_16054758_SNP [dm3] X_16160725_SNP [dm6]	G	T	4.449e^-4	0.998	INTERGENIC
3L	4545923	3L_4545923_SNP [dm3] 3L_4545923_SNP [dm6]	T	A	4.450e^-4	0.998	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	14665267	2R_14665267_SNP [dm3] 2R_18777762_SNP [dm6]	C	T	4.454e^-4	0.998	UPSTREAM CG15093 DOWNSTREAM CR43964 INTERGENIC
X	14182147	X_14182147_SNP [dm3] X_14288114_SNP [dm6]	G	A	4.456e^-4	0.998	UTR_3_PRIME Muc12Ea & 1 other
2L	8615530	2L_8615530_SNP [dm3] 2L_8615530_SNP [dm6]	G	C	4.464e^-4	0.998	INTRON Sema-1a
X	2926643	X_2926643_SNP [dm3] X_3032610_SNP [dm6]	C	T	4.472e^-4	0.998	INTRON kirre
3L	16983481	3L_16983481_SNP [dm3] 3L_16990381_SNP [dm6]	T	A	4.478e^-4	0.998	INTRON Exn
X	10443026	X_10443026_SNP [dm3] X_10548993_SNP [dm6]	C	T	4.478e^-4	0.998	INTRON spri
3R	26318780	3R_26318780_SNP [dm3] 3R_30493058_SNP [dm6]	C	G	4.499e^-4	0.998	SYNONYMOUS_CODING PH4alphaMP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5557577	2L_5557577_SNP [dm3] 2L_5557577_SNP [dm6]	A	T	4.502e^-4	0.998	SPLICE_SITE_REGION GluRIIA INTRON GluRIIA
X	8368555	X_8368555_SNP [dm3] X_8474522_SNP [dm6]	G	A	4.508e^-4	0.998	SYNONYMOUS_CODING Cp7Fb INTRON CG33223 & 1 other
X	14183551	X_14183551_SNP [dm3] X_14289518_SNP [dm6]	A	T	4.518e^-4	0.998	UPSTREAM CG9400 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	13932152	2R_13932152_SNP [dm3] 2R_18044647_SNP [dm6]	T	G	4.522e^-4	0.998	SYNONYMOUS_CODING CG5770 UPSTREAM CG5773
3R	22289363	3R_22289363_SNP [dm3] 3R_26463641_SNP [dm6]	T	A	4.552e^-4	0.998	INTRON CG5455
2L	8059818	2L_8059818_SNP [dm3] 2L_8059818_SNP [dm6]	C	T	4.567e^-4	0.998	SYNONYMOUS_CODING poe
2R	15926973	2R_15926973_SNP [dm3] 2R_20039468_SNP [dm6]	A	G	4.569e^-4	0.998	INTERGENIC
2L	3348342	2L_3348342_DEL [dm3] 2L_3348342_DEL [dm6]	ACGCACATATTTA...	A	4.570e^-4	0.998	INTRON E23
2L	10322692	2L_10322692_SNP [dm3] 2L_10322692_SNP [dm6]	A	T	4.574e^-4	0.998	UPSTREAM CG5381 & 1 other INTRON CG5381 & 1 other
3R	11710859	3R_11710859_SNP [dm3] 3R_15885137_SNP [dm6]	A	T	4.575e^-4	0.998	INTERGENIC
2L	1926074	2L_1926074_DEL [dm3] 2L_1926074_DEL [dm6]	TTC	T	4.587e^-4	0.998	INTRON CG7337
X	13248543	X_13248543_SNP [dm3] X_13354510_SNP [dm6]	A	G	4.595e^-4	0.998	INTERGENIC
3L	14376123	3L_14376123_SNP [dm3] 3L_14383023_SNP [dm6]	T	G	4.602e^-4	0.998	UTR_3_PRIME CG43120
X	19398807	X_19398807_SNP [dm3] X_19504774_SNP [dm6]	A	T	4.613e^-4	0.998	INTRON Pfrx & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	8402577	X_8402577_SNP [dm3] X_8508544_SNP [dm6]	G	A	4.619e^-4	0.998	INTRON CG33181
X	2926636	X_2926636_SNP [dm3] X_3032603_SNP [dm6]	T	A	4.619e^-4	0.998	INTRON kirre
2L	696945	2L_696945_SNP [dm3] 2L_696945_SNP [dm6]	C	T	4.622e^-4	0.998	INTRON ds
3R	26128419	3R_26128419_SNP [dm3] 3R_30302697_SNP [dm6]	T	G	4.628e^-4	0.998	INTRON hdc
3R	5963561	3R_5963561_SNP [dm3] 3R_10137839_SNP [dm6]	T	C	4.633e^-4	0.998	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	13920003	2R_13920003_INS [dm3] 2R_18032498_INS [dm6]	G	GCACT	4.634e^-4	0.998	INTERGENIC
X	18252595	X_18252595_SNP [dm3] X_18358562_SNP [dm6]	G	A	4.635e^-4	0.998	UPSTREAM CG6106 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13950559	2R_13950559_SNP [dm3] 2R_18063054_SNP [dm6]	A	T	4.642e^-4	0.998	INTRON CG34386
3L	8449205	3L_8449205_SNP [dm3] 3L_8456105_SNP [dm6]	A	T	4.684e^-4	0.998	INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	5069599	X_5069599_INS [dm3] X_5175566_INS [dm6]	A	AACGCAA	4.689e^-4	0.998	CODON_INSERTION CG15465 UTR_5_PRIME rg INTRON rg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14768996	X_14768996_DEL [dm3] X_14874963_DEL [dm6]	TC	T	4.690e^-4	0.998	DOWNSTREAM CG45065 & 1 other INTRON Flo2
3L	14836592	3L_14836592_SNP [dm3] 3L_14843492_SNP [dm6]	G	C	4.692e^-4	0.998	INTRON CG17839
3L	7369219	3L_7369219_SNP [dm3] 3L_7376119_SNP [dm6]	G	C	4.709e^-4	0.998	INTRON SMSr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	9644956	2L_9644956_SNP [dm3] 2L_9644956_SNP [dm6]	T	C	4.713e^-4	0.998	SYNONYMOUS_CODING Apoltp
2R	6016764	2R_6016764_SNP [dm3] 2R_10129259_SNP [dm6]	C	A	4.715e^-4	0.998	INTRON gem	TF binding site mE1_TFBS_HSA
X	17440893	X_17440893_SNP [dm3] X_17546860_SNP [dm6]	A	C	4.716e^-4	0.998	INTRON CG43658
2L	13983167	2L_13983167_SNP [dm3] 2L_13983167_SNP [dm6]	G	A	4.718e^-4	0.998	UTR_3_PRIME NimC2 & 1 other DOWNSTREAM NimC2
3R	13657298	3R_13657298_INS [dm3] 3R_17831576_INS [dm6]	A	ACAATA	4.725e^-4	0.998	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	15135061	X_15135061_SNP [dm3] X_15241028_SNP [dm6]	G	C	4.727e^-4	0.998	INTERGENIC
X	18831086	X_18831086_SNP [dm3] X_18937053_SNP [dm6]	C	G	4.732e^-4	0.998	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9571449	2L_9571449_SNP [dm3] 2L_9571449_SNP [dm6]	G	A	4.734e^-4	0.998	INTRON CG3838
2R	4921552	2R_4921552_SNP [dm3] 2R_9034047_SNP [dm6]	T	C	4.755e^-4	0.998	INTERGENIC
X	16855642	X_16855642_SNP [dm3] X_16961609_SNP [dm6]	C	A	4.760e^-4	0.998	SYNONYMOUS_CODING CG9086	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10094519	3L_10094519_SNP [dm3] 3L_10101419_SNP [dm6]	C	A	4.772e^-4	0.998	UPSTREAM CG42826 INTRON dpr6
2R	11666418	2R_11666418_SNP [dm3] 2R_15778913_SNP [dm6]	C	T	4.775e^-4	0.998	INTRON Zasp52
2R	19869596	2R_19869596_SNP [dm3] 2R_23982073_SNP [dm6]	A	G	4.785e^-4	0.998	INTRON Sox14	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9472393	2R_9472393_SNP [dm3] 2R_13584888_SNP [dm6]	A	G	4.788e^-4	0.998	INTRON CG6191 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1
2R	16829653	2R_16829653_SNP [dm3] 2R_20942148_SNP [dm6]	C	T	4.798e^-4	0.998	INTERGENIC
X	6216324	X_6216324_SNP [dm3] X_6322291_SNP [dm6]	G	A	4.799e^-4	0.998	INTRON CG15894
3R	25851270	3R_25851270_SNP [dm3] 3R_30025548_SNP [dm6]	A	G	4.799e^-4	0.998	INTRON Axn
2L	6520957	2L_6520957_DEL [dm3] 2L_6520957_DEL [dm6]	TT	T	4.804e^-4	0.998	INTRON CG31637
2L	18735552	2L_18735552_SNP [dm3] 2L_18735552_SNP [dm6]	C	A	4.808e^-4	0.998	UPSTREAM CR44769 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	13952279	2L_13952279_SNP [dm3] 2L_13952279_SNP [dm6]	A	T	4.812e^-4	0.998	INTRON Ance-3
3L	7482547	3L_7482547_SNP [dm3] 3L_7489447_SNP [dm6]	C	A	4.821e^-4	0.998	INTERGENIC
X	20150049	X_20150049_SNP [dm3] X_20279023_SNP [dm6]	T	G	4.839e^-4	0.998	INTERGENIC
2L	9130332	2L_9130332_SNP [dm3] 2L_9130332_SNP [dm6]	T	A	4.843e^-4	0.998	INTRON CG32982	TF binding site BDTNP1_TFBS_twi
3R	6253280	3R_6253280_SNP [dm3] 3R_10427558_SNP [dm6]	T	A	4.853e^-4	0.998	INTERGENIC
2L	12682479	2L_12682479_SNP [dm3] 2L_12682479_SNP [dm6]	T	C	4.858e^-4	0.998	INTRON pdm2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Kr
2L	5026137	2L_5026137_DEL [dm3] 2L_5026137_DEL [dm6]	TTTGAATAATAATCT...	T	4.866e^-4	0.998	INTRON vkg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	14044785	X_14044785_SNP [dm3] X_14150752_SNP [dm6]	A	T	4.866e^-4	0.998	DOWNSTREAM CG12479 INTERGENIC
X	14182736	X_14182736_SNP [dm3] X_14288703_SNP [dm6]	A	G	4.870e^-4	0.998	DOWNSTREAM Muc12Ea INTRON CG9400	TF binding site mE1_TFBS_HSA
3L	7887270	3L_7887270_SNP [dm3] 3L_7894170_SNP [dm6]	T	A	4.876e^-4	0.998	NON_SYNONYMOUS_CODING CG32365 UPSTREAM eIF4E-5	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26963842	3R_26963842_SNP [dm3] 3R_31138120_SNP [dm6]	G	A	4.881e^-4	0.998	INTRON Gycbeta100B
X	14165995	X_14165995_SNP [dm3] X_14271962_SNP [dm6]	G	C	4.884e^-4	0.998	SYNONYMOUS_CODING na	TF binding site mE1_TFBS_chinmo
2L	5150023	2L_5150023_SNP [dm3] 2L_5150023_SNP [dm6]	G	C	4.888e^-4	0.998	INTRON Msp300
3L	10081475	3L_10081475_SNP [dm3] 3L_10088375_SNP [dm6]	G	C	4.891e^-4	0.998	INTRON dpr6 & 1 other
3L	10094739	3L_10094739_SNP [dm3] 3L_10101639_SNP [dm6]	A	T	4.895e^-4	0.998	UPSTREAM CG42826 INTRON dpr6
X	3182513	X_3182513_DEL [dm3] X_3288480_DEL [dm6]	AATATCA	A	4.895e^-4	0.998	UPSTREAM dnc INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1604649	3L_1604649_SNP [dm3] 3L_1604649_SNP [dm6]	A	T	4.900e^-4	0.998	UTR_5_PRIME CG33791 UTR_3_PRIME CG18170 UPSTREAM CG33791
3R	14243375	3R_14243375_SNP [dm3] 3R_18417653_SNP [dm6]	A	G	4.911e^-4	0.998	INTRON fru	TF binding site BDTNP1_TFBS_dl
3L	10081463	3L_10081463_SNP [dm3] 3L_10088363_SNP [dm6]	A	T	4.932e^-4	0.998	INTRON dpr6 & 1 other
2R	7582834	2R_7582834_SNP [dm3] 2R_11695329_SNP [dm6]	A	T	4.937e^-4	0.998	UTR_3_PRIME CG13197
2L	19734033	2L_19734033_SNP [dm3] 2L_19734033_SNP [dm6]	T	A	4.951e^-4	0.998	SYNONYMOUS_CODING CG10462	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19315413	X_19315413_SNP [dm3] X_19421380_SNP [dm6]	T	G	4.953e^-4	0.998	INTRON kek5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14165625	X_14165625_SNP [dm3] X_14271592_SNP [dm6]	C	T	4.956e^-4	0.998	SYNONYMOUS_CODING na	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1693699	3L_1693699_SNP [dm3] 3L_1693699_SNP [dm6]	A	G	4.975e^-4	0.998	UPSTREAM CG12011 INTRON CG7991
X	14840676	X_14840676_SNP [dm3] X_14946643_SNP [dm6]	G	A	4.980e^-4	0.998	INTRON pdgy
3L	10094493	3L_10094493_SNP [dm3] 3L_10101393_SNP [dm6]	G	T	4.982e^-4	0.998	UPSTREAM CG42826 INTRON dpr6
3L	15523687	3L_15523687_SNP [dm3] 3L_15530587_SNP [dm6]	C	T	4.989e^-4	0.998	INTRON CG43248	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7398013	2L_7398013_INS [dm3] 2L_7398013_INS [dm6]	A	ATTGTTAT	4.999e^-4	0.998	INTRON CG5160	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	7398015	2L_7398015_SNP [dm3] 2L_7398015_SNP [dm6]	A	T	4.999e^-4	0.998	INTRON CG5160	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	18872053	2L_18872053_SNP [dm3] 2L_18872053_SNP [dm6]	C	A	5.004e^-4	0.998	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3877917	2L_3877917_SNP [dm3] 2L_3877917_SNP [dm6]	T	A	5.006e^-4	0.998	INTRON capu
2R	14726419	2R_14726419_SNP [dm3] 2R_18838914_SNP [dm6]	A	G	5.011e^-4	0.998	SYNONYMOUS_CODING CG15099	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14726425	2R_14726425_SNP [dm3] 2R_18838920_SNP [dm6]	A	G	5.014e^-4	0.998	SYNONYMOUS_CODING CG15099	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20355319	2R_20355319_SNP [dm3] 2R_24467796_SNP [dm6]	T	C	5.020e^-4	0.998	INTRON CG13579
3L	4838936	3L_4838936_SNP [dm3] 3L_4838936_SNP [dm6]	C	T	5.021e^-4	0.998	UTR_5_PRIME CG13707 INTRON CG13707
2L	20084532	2L_20084532_DEL [dm3] 2L_20084532_DEL [dm6]	TT	T	5.021e^-4	0.998	INTRON neb & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11525398	3L_11525398_SNP [dm3] 3L_11532298_SNP [dm6]	C	T	5.024e^-4	0.998	INTRON Mob2
2R	14517144	2R_14517144_INS [dm3] 2R_18629639_INS [dm6]	A	AG	5.069e^-4	0.998	UTR_3_PRIME CG5482 DOWNSTREAM CG5482 & 1 other	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	10519332	3L_10519332_SNP [dm3] 3L_10526232_SNP [dm6]	G	A	5.077e^-4	0.998	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18784638	2L_18784638_SNP [dm3] 2L_18784638_SNP [dm6]	A	C	5.084e^-4	0.998	INTRON ham	TF binding site BDTNP1_TFBS_dl
3R	27128046	3R_27128046_SNP [dm3] 3R_31302324_SNP [dm6]	C	T	5.084e^-4	0.998	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_inv
2R	12687953	2R_12687953_SNP [dm3] 2R_16800448_SNP [dm6]	A	T	5.088e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
X	21947722	X_21947722_SNP [dm3] X_22545886_SNP [dm6]	A	G	5.095e^-4	0.998	INTERGENIC	transposable element FlyBase
3L	12900270	3L_12900270_SNP [dm3] 3L_12907170_SNP [dm6]	A	G	5.102e^-4	0.998	INTERGENIC
3L	1718230	3L_1718230_SNP [dm3] 3L_1718230_SNP [dm6]	A	G	5.103e^-4	0.998	INTRON drpr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17711858	X_17711858_SNP [dm3] X_17817825_SNP [dm6]	G	A	5.124e^-4	0.998	INTERGENIC
X	6451477	X_6451477_SNP [dm3] X_6557444_SNP [dm6]	G	A	5.131e^-4	0.998	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
3L	9875563	3L_9875563_SNP [dm3] 3L_9882463_SNP [dm6]	C	T	5.135e^-4	0.998	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
3R	19601425	3R_19601425_SNP [dm3] 3R_23775703_SNP [dm6]	C	A	5.143e^-4	0.998	NON_SYNONYMOUS_CODING Nup98-96	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17879977	3L_17879977_SNP [dm3] 3L_17886877_SNP [dm6]	C	T	5.144e^-4	0.998	UPSTREAM CG16775 & 1 other INTERGENIC
2L	6107830	2L_6107830_SNP [dm3] 2L_6107830_SNP [dm6]	C	T	5.146e^-4	0.998	INTRON stai
2L	10085825	2L_10085825_SNP [dm3] 2L_10085825_SNP [dm6]	C	T	5.147e^-4	0.998	INTRON CG44153
2L	4596035	2L_4596035_SNP [dm3] 2L_4596035_SNP [dm6]	T	A	5.148e^-4	0.998	UPSTREAM dp INTRON dp	TF binding site mE1_TFBS_HSA
3L	1604192	3L_1604192_SNP [dm3] 3L_1604192_SNP [dm6]	C	A	5.150e^-4	0.998	NON_SYNONYMOUS_CODING CG18170 UTR_5_PRIME CG33791 UPSTREAM CG33791
3L	1604648	3L_1604648_SNP [dm3] 3L_1604648_SNP [dm6]	A	G	5.155e^-4	0.998	UTR_5_PRIME CG33791 UTR_3_PRIME CG18170 UPSTREAM CG33791
3R	18368181	3R_18368181_SNP [dm3] 3R_22542459_SNP [dm6]	C	A	5.160e^-4	0.998	UPSTREAM CR45647 INTERGENIC
3R	26268525	3R_26268525_SNP [dm3] 3R_30442803_SNP [dm6]	G	C	5.161e^-4	0.998	INTRON CG15537
2L	19913514	2L_19913514_SNP [dm3] 2L_19913514_SNP [dm6]	C	A	5.164e^-4	0.998	START_LOST Victoria INTRON sick
3R	14977420	3R_14977420_SNP [dm3] 3R_19151698_SNP [dm6]	C	A	5.169e^-4	0.998	INTRON CG5835
2L	12418606	2L_12418606_SNP [dm3] 2L_12418606_SNP [dm6]	C	T	5.175e^-4	0.998	INTRON vir-1
2L	3558905	2L_3558905_SNP [dm3] 2L_3558905_SNP [dm6]	C	A	5.176e^-4	0.998	INTERGENIC
2L	12167463	2L_12167463_SNP [dm3] 2L_12167463_SNP [dm6]	A	T	5.180e^-4	0.998	DOWNSTREAM ZnT33D INTRON CG31760
2R	7937825	2R_7937825_DEL [dm3] 2R_12050320_DEL [dm6]	TT	T	5.185e^-4	0.998	DOWNSTREAM CG30039 & 1 other INTERGENIC
2L	8167858	2L_8167858_SNP [dm3] 2L_8167858_SNP [dm6]	G	C	5.187e^-4	0.998	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13211544	2L_13211544_SNP [dm3] 2L_13211544_SNP [dm6]	T	C	5.196e^-4	0.998	NON_SYNONYMOUS_CODING CG15482 DOWNSTREAM Pect & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17565121	X_17565121_SNP [dm3] X_17671088_SNP [dm6]	T	C	5.202e^-4	0.998	NON_SYNONYMOUS_CODING CG12990
3R	13570405	3R_13570405_SNP [dm3] 3R_17744683_SNP [dm6]	A	C	5.219e^-4	0.998	INTRON TyrRII
3R	15025453	3R_15025453_SNP [dm3] 3R_19199731_SNP [dm6]	G	A	5.223e^-4	0.998	INTRON CG31475
X	16052803	X_16052803_SNP [dm3] X_16158770_SNP [dm6]	G	A	5.224e^-4	0.998	INTERGENIC
3L	12849691	3L_12849691_SNP [dm3] 3L_12856591_SNP [dm6]	A	G	5.239e^-4	0.998	UTR_3_PRIME Ent3 DOWNSTREAM CG32107	TF binding site mE1_TFBS_cad
3R	24990935	3R_24990935_SNP [dm3] 3R_29165213_SNP [dm6]	A	G	5.239e^-4	0.998	UPSTREAM CG11898 DOWNSTREAM CG11897 INTERGENIC
X	2436373	X_2436373_SNP [dm3] X_2542340_SNP [dm6]	G	C	5.241e^-4	0.998	INTRON trol	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	7755434	2L_7755434_SNP [dm3] 2L_7755434_SNP [dm6]	T	C	5.247e^-4	0.998	UPSTREAM CG14538 INTRON CG7196
3L	10204476	3L_10204476_SNP [dm3] 3L_10211376_SNP [dm6]	A	T	5.253e^-4	0.998	INTERGENIC
3R	20786039	3R_20786039_SNP [dm3] 3R_24960317_SNP [dm6]	C	A	5.257e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22762331	3R_22762331_SNP [dm3] 3R_26936609_SNP [dm6]	C	T	5.266e^-4	0.998	INTRON sda
2R	17793800	2R_17793800_SNP [dm3] 2R_21906295_SNP [dm6]	C	G	5.274e^-4	0.998	INTRON Fili
3R	26255757	3R_26255757_INS [dm3] 3R_30430035_INS [dm6]	T	TC	5.278e^-4	0.998	INTRON CG15533	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17504251	2R_17504251_SNP [dm3] 2R_21616746_SNP [dm6]	G	C	5.279e^-4	0.998	UTR_5_PRIME CG18870 DOWNSTREAM clt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	11327910	2R_11327910_SNP [dm3] 2R_15440405_SNP [dm6]	T	C	5.291e^-4	0.998	INTRON CG43729
2R	9105766	2R_9105766_SNP [dm3] 2R_13218261_SNP [dm6]	A	T	5.295e^-4	0.998	UTR_5_PRIME CG4630 INTRON CG4630	TF binding site mE1_TFBS_cad
3R	25871588	3R_25871588_SNP [dm3] 3R_30045866_SNP [dm6]	T	A	5.305e^-4	0.998	UTR_5_PRIME RpL32 UPSTREAM CG7943 DOWNSTREAM Sry-delta INTRON RpL32	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3R	9771727	3R_9771727_SNP [dm3] 3R_13946005_SNP [dm6]	T	C	5.326e^-4	0.998	UPSTREAM Art6 INTERGENIC
X	21183165	X_21183165_SNP [dm3] X_21312138_SNP [dm6]	T	A	5.343e^-4	0.998	SYNONYMOUS_CODING CG1801
3L	7908960	3L_7908960_SNP [dm3] 3L_7915860_SNP [dm6]	G	T	5.364e^-4	0.998	UPSTREAM CG8111 DOWNSTREAM syd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	19362971	3R_19362971_SNP [dm3] 3R_23537249_SNP [dm6]	G	A	5.366e^-4	0.998	SYNONYMOUS_CODING CG10168 UPSTREAM CG16732
2R	18800568	2R_18800568_SNP [dm3] 2R_22913045_SNP [dm6]	G	T	5.380e^-4	0.998	SYNONYMOUS_CODING nahoda	TF binding site mE1_TFBS_HSA
3R	25847327	3R_25847327_SNP [dm3] 3R_30021605_SNP [dm6]	C	A	5.384e^-4	0.998	DOWNSTREAM RpS28a INTRON Mgat2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens
X	12155790	X_12155790_SNP [dm3] X_12261757_SNP [dm6]	G	A	5.400e^-4	0.998	INTRON Ten-a
3R	25841230	3R_25841230_SNP [dm3] 3R_30015508_SNP [dm6]	G	T	5.409e^-4	0.998	UPSTREAM CG7920 DOWNSTREAM Mgat2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2L	10059368	2L_10059368_SNP [dm3] 2L_10059368_SNP [dm6]	C	T	5.417e^-4	0.998	SYNONYMOUS_CODING Pen	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25851168	3R_25851168_SNP [dm3] 3R_30025446_SNP [dm6]	T	A	5.417e^-4	0.998	INTRON Axn
3R	19363280	3R_19363280_SNP [dm3] 3R_23537558_SNP [dm6]	G	A	5.435e^-4	0.998	SYNONYMOUS_CODING CG10168 UPSTREAM CG16732
X	10448920	X_10448920_SNP [dm3] X_10554887_SNP [dm6]	A	C	5.440e^-4	0.998	INTRON spri
3R	20532618	3R_20532618_SNP [dm3] 3R_24706896_SNP [dm6]	G	T	5.442e^-4	0.998	SYNONYMOUS_CODING slo
3R	14292874	3R_14292874_SNP [dm3] 3R_18467152_SNP [dm6]	T	C	5.449e^-4	0.998	INTRON fru
2R	11612855	2R_11612855_SNP [dm3] 2R_15725350_SNP [dm6]	C	G	5.451e^-4	0.998	INTERGENIC
3L	10095614	3L_10095614_SNP [dm3] 3L_10102514_SNP [dm6]	A	G	5.453e^-4	0.998	INTRON dpr6
X	14165648	X_14165648_SNP [dm3] X_14271615_SNP [dm6]	C	T	5.459e^-4	0.998	SYNONYMOUS_CODING na	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8203812	2L_8203812_SNP [dm3] 2L_8203812_SNP [dm6]	C	T	5.469e^-4	0.998	INTRON CR44119 & 1 other
2L	1677571	2L_1677571_SNP [dm3] 2L_1677571_SNP [dm6]	C	G	5.473e^-4	0.998	INTRON chinmo
3L	20888236	3L_20888236_SNP [dm3] 3L_20895136_SNP [dm6]	A	G	5.477e^-4	0.998	INTERGENIC
3R	6115729	3R_6115729_SNP [dm3] 3R_10290007_SNP [dm6]	G	A	5.493e^-4	0.998	UPSTREAM CG43143 INTRON CG43143
3L	10081597	3L_10081597_SNP [dm3] 3L_10088497_SNP [dm6]	G	C	5.496e^-4	0.998	INTRON dpr6 & 1 other
X	6453439	X_6453439_SNP [dm3] X_6559406_SNP [dm6]	A	C	5.497e^-4	0.998	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_inv
3R	25841201	3R_25841201_SNP [dm3] 3R_30015479_SNP [dm6]	G	C	5.505e^-4	0.998	UPSTREAM CG7920 DOWNSTREAM Mgat2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3R	25842026	3R_25842026_SNP [dm3] 3R_30016304_SNP [dm6]	A	G	5.505e^-4	0.998	UTR_3_PRIME Mgat2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25842256	3R_25842256_SNP [dm3] 3R_30016534_SNP [dm6]	G	A	5.505e^-4	0.998	SYNONYMOUS_CODING Mgat2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25843557	3R_25843557_SNP [dm3] 3R_30017835_SNP [dm6]	G	C	5.505e^-4	0.998	SYNONYMOUS_CODING Mgat2 INTRON Mgat2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25845207	3R_25845207_SNP [dm3] 3R_30019485_SNP [dm6]	C	T	5.505e^-4	0.998	NON_SYNONYMOUS_CODING Mgat2
3R	25847597	3R_25847597_SNP [dm3] 3R_30021875_SNP [dm6]	C	G	5.505e^-4	0.998	UTR_5_PRIME Mgat2 UPSTREAM Axn DOWNSTREAM RpS28a INTRON Mgat2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	18531737	3L_18531737_SNP [dm3] 3L_18538637_SNP [dm6]	A	G	5.507e^-4	0.998	INTERGENIC
X	11148016	X_11148016_SNP [dm3] X_11253983_SNP [dm6]	C	T	5.512e^-4	0.998	INTRON CG44422
3R	13279570	3R_13279570_SNP [dm3] 3R_17453848_SNP [dm6]	A	C	5.518e^-4	0.998	INTERGENIC
3L	10251499	3L_10251499_SNP [dm3] 3L_10258399_SNP [dm6]	G	A	5.518e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_inv
3R	5890647	3R_5890647_SNP [dm3] 3R_10064925_SNP [dm6]	G	C	5.519e^-4	0.998	DOWNSTREAM CG33631 INTERGENIC
3R	19418517	3R_19418517_SNP [dm3] 3R_23592795_SNP [dm6]	A	T	5.535e^-4	0.998	UPSTREAM CG33337 DOWNSTREAM CG16723 INTERGENIC
3R	16900505	3R_16900505_SNP [dm3] 3R_21074783_SNP [dm6]	C	G	5.541e^-4	0.998	INTRON dmrt93B
3R	25759471	3R_25759471_SNP [dm3] 3R_29933749_SNP [dm6]	T	A	5.543e^-4	0.998	SYNONYMOUS_CODING CG42557 UTR_5_PRIME CG42558 UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14219218	2R_14219218_DEL [dm3] 2R_18331713_DEL [dm6]	AGGAAACCCCAATAGA...	A	5.543e^-4	0.998	INTRON sbb	TF binding site mE1_TFBS_inv
2R	16288962	2R_16288962_DEL [dm3] 2R_20401457_DEL [dm6]	CTTCG	C	5.562e^-4	0.998	INTERGENIC
3L	10081457	3L_10081457_SNP [dm3] 3L_10088357_SNP [dm6]	A	G	5.563e^-4	0.998	INTRON dpr6 & 1 other
3R	13892162	3R_13892162_SNP [dm3] 3R_18066440_SNP [dm6]	T	A	5.566e^-4	0.998	INTERGENIC
3R	13139524	3R_13139524_SNP [dm3] 3R_17313802_SNP [dm6]	G	T	5.590e^-4	0.998	INTERGENIC
3R	18480610	3R_18480610_SNP [dm3] 3R_22654888_SNP [dm6]	T	C	5.600e^-4	0.998	INTRON CG45058
X	12155789	X_12155789_SNP [dm3] X_12261756_SNP [dm6]	G	A	5.601e^-4	0.998	INTRON Ten-a
3L	10094675	3L_10094675_SNP [dm3] 3L_10101575_SNP [dm6]	A	G	5.601e^-4	0.998	UPSTREAM CG42826 INTRON dpr6
2L	2735393	2L_2735393_SNP [dm3] 2L_2735393_SNP [dm6]	C	A	5.606e^-4	0.998	UPSTREAM CG31689 INTRON CG31689
2R	5853350	2R_5853350_SNP [dm3] 2R_9965845_SNP [dm6]	G	A	5.618e^-4	0.998	UPSTREAM CG1418 INTERGENIC
X	14227406	X_14227406_SNP [dm3] X_14333373_SNP [dm6]	T	C	5.629e^-4	0.998	INTRON dpr8
3L	10251576	3L_10251576_DEL [dm3] 3L_10258476_DEL [dm6]	TGGTAAGT	T	5.631e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_inv
3L	10251585	3L_10251585_DEL [dm3] 3L_10258485_DEL [dm6]	ATT	A	5.631e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_inv
3R	14623556	3R_14623556_SNP [dm3] 3R_18797834_SNP [dm6]	G	A	5.637e^-4	0.998	INTERGENIC
3R	14851132	3R_14851132_SNP [dm3] 3R_19025410_SNP [dm6]	T	G	5.646e^-4	0.998	SYNONYMOUS_CODING CG14285 DOWNSTREAM CG14286 & 1 other
X	13020176	X_13020176_SNP [dm3] X_13126143_SNP [dm6]	T	C	5.648e^-4	0.998	SYNONYMOUS_CODING CG32638
3L	1042784	3L_1042784_SNP [dm3] 3L_1042784_SNP [dm6]	G	A	5.648e^-4	0.998	INTRON bab1
3R	25091548	3R_25091548_SNP [dm3] 3R_29265826_SNP [dm6]	T	A	5.651e^-4	0.998	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12000191	2R_12000191_SNP [dm3] 2R_16112686_SNP [dm6]	A	C	5.670e^-4	0.998	NON_SYNONYMOUS_CODING Asph
2R	19388770	2R_19388770_SNP [dm3] 2R_23501247_SNP [dm6]	G	T	5.674e^-4	0.998	DOWNSTREAM CG13558 INTERGENIC
2R	5851715	2R_5851715_SNP [dm3] 2R_9964210_SNP [dm6]	G	A	5.690e^-4	0.998	SYNONYMOUS_CODING CG1418 DOWNSTREAM Pal1	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	19753855	2L_19753855_SNP [dm3] 2L_19753855_SNP [dm6]	C	G	5.693e^-4	0.998	SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13644610	X_13644610_SNP [dm3] X_13750577_SNP [dm6]	A	T	5.695e^-4	0.998	INTRON Pdcd4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19217493	2L_19217493_SNP [dm3] 2L_19217493_SNP [dm6]	T	C	5.697e^-4	0.998	EXON CR44189	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_sens
2R	11643918	2R_11643918_SNP [dm3] 2R_15756413_SNP [dm6]	G	A	5.706e^-4	0.998	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14520071	X_14520071_SNP [dm3] X_14626038_SNP [dm6]	T	C	5.711e^-4	0.998	INTRON NetA
2R	6797711	2R_6797711_SNP [dm3] 2R_10910206_SNP [dm6]	G	C	5.725e^-4	0.998	SYNONYMOUS_CODING Obp47a
2L	10363768	2L_10363768_SNP [dm3] 2L_10363768_SNP [dm6]	T	G	5.728e^-4	0.998	NON_SYNONYMOUS_CODING pim UPSTREAM lft	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	19742727	2L_19742727_SNP [dm3] 2L_19742727_SNP [dm6]	C	T	5.734e^-4	0.998	UPSTREAM CR44906 DOWNSTREAM CG10631 INTERGENIC
3R	27512561	3R_27512561_INS [dm3] 3R_31686839_INS [dm6]	G	GG	5.743e^-4	0.998	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26000358	3R_26000358_SNP [dm3] 3R_30174636_SNP [dm6]	C	T	5.744e^-4	0.998	UPSTREAM Mlc2 INTERGENIC	regulatory region REDfly_CRMs
3L	11549181	3L_11549181_SNP [dm3] 3L_11556081_SNP [dm6]	A	G	5.746e^-4	0.998	INTRON Mob2	TF binding site BDTNP1_TFBS_dl
2R	6016751	2R_6016751_SNP [dm3] 2R_10129246_SNP [dm6]	A	T	5.756e^-4	0.998	INTRON gem	TF binding site mE1_TFBS_HSA
3L	7874221	3L_7874221_INS [dm3] 3L_7881121_INS [dm6]	T	TTGAACTT	5.767e^-4	0.998	INTRON CG32365
2L	3550216	2L_3550216_INS [dm3] 2L_3550216_INS [dm6]	T	TGTAT	5.767e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3R	16828257	3R_16828257_SNP [dm3] 3R_21002535_SNP [dm6]	T	G	5.769e^-4	0.998	INTRON Calx
3R	22288817	3R_22288817_SNP [dm3] 3R_26463095_SNP [dm6]	C	A	5.775e^-4	0.998	INTRON CG5455	TF binding site mE1_TFBS_Trl
X	6680814	X_6680814_SNP [dm3] X_6786781_SNP [dm6]	G	A	5.776e^-4	0.998	SYNONYMOUS_CODING C3G	TF binding site mE1_TFBS_chinmo
2L	2526295	2L_2526295_SNP [dm3] 2L_2526295_SNP [dm6]	T	A	5.779e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_cad
3L	18672198	3L_18672198_SNP [dm3] 3L_18679098_SNP [dm6]	C	T	5.784e^-4	0.998	INTERGENIC
3R	25846448	3R_25846448_SNP [dm3] 3R_30020726_SNP [dm6]	G	A	5.785e^-4	0.998	INTRON Mgat2	TF binding site BDTNP1_TFBS_dl
2L	3348310	2L_3348310_SNP [dm3] 2L_3348310_SNP [dm6]	A	T	5.785e^-4	0.998	INTRON E23
2R	17930579	2R_17930579_SNP [dm3] 2R_22043074_SNP [dm6]	A	G	5.817e^-4	0.998	UPSTREAM PpD5 INTERGENIC
2R	17930585	2R_17930585_SNP [dm3] 2R_22043080_SNP [dm6]	G	T	5.817e^-4	0.998	UPSTREAM PpD5 INTERGENIC
2R	17930594	2R_17930594_SNP [dm3] 2R_22043089_SNP [dm6]	C	T	5.817e^-4	0.998	UPSTREAM PpD5 INTERGENIC
3L	11413986	3L_11413986_SNP [dm3] 3L_11420886_SNP [dm6]	T	A	5.826e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17440905	X_17440905_SNP [dm3] X_17546872_SNP [dm6]	A	C	5.847e^-4	0.998	INTRON CG43658
X	17440908	X_17440908_SNP [dm3] X_17546875_SNP [dm6]	T	C	5.847e^-4	0.998	INTRON CG43658
X	17349446	X_17349446_SNP [dm3] X_17455413_SNP [dm6]	A	T	5.853e^-4	0.998	DOWNSTREAM CG43658 INTERGENIC
3L	1604651	3L_1604651_SNP [dm3] 3L_1604651_SNP [dm6]	C	T	5.854e^-4	0.998	UTR_5_PRIME CG33791 UTR_3_PRIME CG18170 UPSTREAM CG33791
3R	25845921	3R_25845921_SNP [dm3] 3R_30020199_SNP [dm6]	G	C	5.864e^-4	0.998	INTRON Mgat2	TF binding site mE1_TFBS_chinmo
2L	7338333	2L_7338333_SNP [dm3] 2L_7338333_SNP [dm6]	G	T	5.867e^-4	0.998	INTRON Wnt6

By genomic position
Variant impact
Gene name

Wing_Intervein_Area6 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results