DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.968e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3007 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	16202334	3L_16202334_SNP [dm3] 3L_16209234_SNP [dm6]	A	T	4.844e^-8	0.052	INTERGENIC	TF binding site mE1_TFBS_cad
3L	16202321	3L_16202321_SNP [dm3] 3L_16209221_SNP [dm6]	G	T	6.099e^-8	0.052	INTERGENIC	TF binding site mE1_TFBS_cad
3L	16202369	3L_16202369_SNP [dm3] 3L_16209269_SNP [dm6]	G	A	8.326e^-8	0.052	INTERGENIC	TF binding site mE1_TFBS_cad
3L	12615746	3L_12615746_MNP [dm3] 3L_12622646_MNP [dm6]	GAA	AGC	2.240e^-7	0.105	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	712348	3L_712348_SNP [dm3] 3L_712348_SNP [dm6]	G	T	4.205e^-7	0.114	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	12615738	3L_12615738_SNP [dm3] 3L_12622638_SNP [dm6]	C	G	4.462e^-7	0.114	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	711790	3L_711790_SNP [dm3] 3L_711790_SNP [dm6]	A	T	4.614e^-7	0.114	UTR_5_PRIME CG13896	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	712399	3L_712399_SNP [dm3] 3L_712399_SNP [dm6]	A	T	4.874e^-7	0.114	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	711857	3L_711857_SNP [dm3] 3L_711857_SNP [dm6]	A	C	8.680e^-7	0.16	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	712385	3L_712385_DEL [dm3] 3L_712385_DEL [dm6]	TA	T	9.691e^-7	0.16	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712376	3L_712376_SNP [dm3] 3L_712376_SNP [dm6]	G	A	9.746e^-7	0.16	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	16202346	3L_16202346_SNP [dm3] 3L_16209246_SNP [dm6]	C	T	1.109e^-6	0.16	INTERGENIC	TF binding site mE1_TFBS_cad
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	1.244e^-6	0.16	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	712235	3L_712235_SNP [dm3] 3L_712235_SNP [dm6]	C	T	1.292e^-6	0.16	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	712377	3L_712377_SNP [dm3] 3L_712377_SNP [dm6]	A	C	1.361e^-6	0.16	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712388	3L_712388_DEL [dm3] 3L_712388_DEL [dm6]	AAT	A	1.369e^-6	0.16	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712384	3L_712384_SNP [dm3] 3L_712384_SNP [dm6]	T	C	1.806e^-6	0.199	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	19503954	2R_19503954_SNP [dm3] 2R_23616431_SNP [dm6]	C	T	2.048e^-6	0.213	INTRON CG17664
3L	712337	3L_712337_SNP [dm3] 3L_712337_SNP [dm6]	G	T	2.176e^-6	0.215	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712226	3L_712226_SNP [dm3] 3L_712226_SNP [dm6]	C	A	2.372e^-6	0.222	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	7479975	3L_7479975_SNP [dm3] 3L_7486875_SNP [dm6]	T	C	3.058e^-6	0.256	SYNONYMOUS_CODING mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12615764	3L_12615764_SNP [dm3] 3L_12622664_SNP [dm6]	T	A	3.061e^-6	0.256	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	4737896	3L_4737896_SNP [dm3] 3L_4737896_SNP [dm6]	G	A	3.290e^-6	0.256	INTRON RhoGEF64C
3R	4342921	3R_4342921_SNP [dm3] 3R_8517199_SNP [dm6]	C	T	3.433e^-6	0.256	UPSTREAM CG11737 INTERGENIC
3L	712374	3L_712374_SNP [dm3] 3L_712374_SNP [dm6]	G	C	3.516e^-6	0.256	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	781261	3L_781261_SNP [dm3] 3L_781261_SNP [dm6]	G	T	3.551e^-6	0.256	INTERGENIC
3L	712423	3L_712423_SNP [dm3] 3L_712423_SNP [dm6]	G	C	3.952e^-6	0.261	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	4737895	3L_4737895_SNP [dm3] 3L_4737895_SNP [dm6]	A	G	3.981e^-6	0.261	INTRON RhoGEF64C
2L	19855447	2L_19855447_SNP [dm3] 2L_19855447_SNP [dm6]	A	T	4.037e^-6	0.261	INTRON sick
2R	6879142	2R_6879142_SNP [dm3] 2R_10991637_SNP [dm6]	G	A	4.217e^-6	0.264	INTRON luna	TF binding site mE1_TFBS_chinmo
3R	12971257	3R_12971257_SNP [dm3] 3R_17145535_SNP [dm6]	A	C	4.537e^-6	0.266	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3R	12971260	3R_12971260_DEL [dm3] 3R_17145538_DEL [dm6]	AGGTAAGCATCCTA...	G	4.537e^-6	0.266	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
X	9638379	X_9638379_SNP [dm3] X_9744346_SNP [dm6]	T	C	4.912e^-6	0.279	INTRON Sp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	712335	3L_712335_SNP [dm3] 3L_712335_SNP [dm6]	T	A	5.371e^-6	0.284	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	16289150	2R_16289150_SNP [dm3] 2R_20401645_SNP [dm6]	G	A	5.459e^-6	0.284	INTERGENIC
3L	7479886	3L_7479886_SNP [dm3] 3L_7486786_SNP [dm6]	C	T	5.462e^-6	0.284	INTRON mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3934025	X_3934025_SNP [dm3] X_4039992_SNP [dm6]	C	A	5.875e^-6	0.298	INTERGENIC
3L	13310290	3L_13310290_SNP [dm3] 3L_13317190_SNP [dm6]	T	G	6.068e^-6	0.299	INTERGENIC
3L	712319	3L_712319_INS [dm3] 3L_712319_INS [dm6]	C	CA	7.133e^-6	0.301	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712342	3L_712342_SNP [dm3] 3L_712342_SNP [dm6]	A	T	7.133e^-6	0.301	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	7309076	3L_7309076_SNP [dm3] 3L_7315976_SNP [dm6]	T	C	7.147e^-6	0.301	INTERGENIC
3L	7309077	3L_7309077_SNP [dm3] 3L_7315977_SNP [dm6]	T	C	7.147e^-6	0.301	INTERGENIC
2R	3257613	2R_3257613_SNP [dm3] 2R_7370108_SNP [dm6]	C	T	7.216e^-6	0.301	INTRON Dscam1
3L	781289	3L_781289_SNP [dm3] 3L_781289_SNP [dm6]	T	C	7.341e^-6	0.301	INTERGENIC
3L	16921097	3L_16921097_SNP [dm3] 3L_16927997_SNP [dm6]	C	T	7.361e^-6	0.301	UPSTREAM CG13023 DOWNSTREAM CG11905 INTERGENIC
3L	712343	3L_712343_SNP [dm3] 3L_712343_SNP [dm6]	A	C	7.397e^-6	0.301	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	387696	2L_387696_SNP [dm3] 2L_387696_SNP [dm6]	T	A	8.251e^-6	0.326	DOWNSTREAM al INTERGENIC
2R	12278778	2R_12278778_SNP [dm3] 2R_16391273_SNP [dm6]	G	A	8.348e^-6	0.326	INTRON Sema-2b	TF binding site mE1_TFBS_chinmo
2R	20658290	2R_20658290_DEL [dm3] 2R_24770767_DEL [dm6]	TG	T	8.798e^-6	0.327	UTR_3_PRIME Eps-15 INTRON Eps-15	TF binding site BDTNP1_TFBS_prd
3L	1587132	3L_1587132_SNP [dm3] 3L_1587132_SNP [dm6]	C	G	8.898e^-6	0.327	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	1587227	3L_1587227_SNP [dm3] 3L_1587227_SNP [dm6]	G	A	8.898e^-6	0.327	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	9.160e^-6	0.329	EXON CR44950
2L	4016813	2L_4016813_SNP [dm3] 2L_4016813_SNP [dm6]	T	C	9.290e^-6	0.329	INTERGENIC
3L	11599845	3L_11599845_SNP [dm3] 3L_11606745_SNP [dm6]	T	C	9.472e^-6	0.329	SYNONYMOUS_CODING CG6091
3L	712455	3L_712455_SNP [dm3] 3L_712455_SNP [dm6]	C	T	1.015e^-5	0.334	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	9147155	2R_9147155_SNP [dm3] 2R_13259650_SNP [dm6]	A	T	1.045e^-5	0.334	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2L	6508912	2L_6508912_SNP [dm3] 2L_6508912_SNP [dm6]	T	A	1.059e^-5	0.334	UPSTREAM CR44775 INTRON CG31637	TF binding site BDTNP1_TFBS_hb
2L	19802446	2L_19802446_SNP [dm3] 2L_19802446_SNP [dm6]	A	G	1.060e^-5	0.334	INTRON sick
3L	16331253	3L_16331253_SNP [dm3] 3L_16338153_SNP [dm6]	G	C	1.065e^-5	0.334	UPSTREAM CG4998 INTERGENIC
3R	5145048	3R_5145048_SNP [dm3] 3R_9319326_SNP [dm6]	G	A	1.068e^-5	0.334	INTRON CG8861
3L	12615832	3L_12615832_SNP [dm3] 3L_12622732_SNP [dm6]	C	A	1.175e^-5	0.354	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3680402	3L_3680402_SNP [dm3] 3L_3680402_SNP [dm6]	T	C	1.195e^-5	0.354	INTERGENIC
3R	5137887	3R_5137887_SNP [dm3] 3R_9312165_SNP [dm6]	A	G	1.204e^-5	0.354	INTRON CG8861
3L	21386998	3L_21386998_SNP [dm3] 3L_21393898_SNP [dm6]	G	A	1.208e^-5	0.354	INTRON rgn
2R	17621665	2R_17621665_SNP [dm3] 2R_21734160_SNP [dm6]	T	A	1.320e^-5	0.374	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	12615821	3L_12615821_SNP [dm3] 3L_12622721_SNP [dm6]	C	T	1.356e^-5	0.374	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13310278	3L_13310278_SNP [dm3] 3L_13317178_SNP [dm6]	C	G	1.375e^-5	0.374	INTERGENIC
3L	712323	3L_712323_SNP [dm3] 3L_712323_SNP [dm6]	T	A	1.378e^-5	0.374	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	3437649	2L_3437649_SNP [dm3] 2L_3437649_SNP [dm6]	A	T	1.386e^-5	0.374	INTERGENIC
3L	8458809	3L_8458809_SNP [dm3] 3L_8465709_SNP [dm6]	C	A	1.406e^-5	0.374	SYNONYMOUS_CODING Gug	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13317212	3L_13317212_SNP [dm3] 3L_13324112_SNP [dm6]	T	C	1.416e^-5	0.374	DOWNSTREAM CR44558 INTERGENIC
X	3934017	X_3934017_SNP [dm3] X_4039984_SNP [dm6]	T	A	1.446e^-5	0.377	INTERGENIC
X	4764291	X_4764291_SNP [dm3] X_4870258_SNP [dm6]	T	C	1.495e^-5	0.379	INTRON CG42594
3L	7199896	3L_7199896_SNP [dm3] 3L_7206796_SNP [dm6]	T	G	1.499e^-5	0.379	INTERGENIC
3L	8471964	3L_8471964_SNP [dm3] 3L_8478864_SNP [dm6]	G	C	1.528e^-5	0.379	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19802428	2L_19802428_SNP [dm3] 2L_19802428_SNP [dm6]	A	G	1.549e^-5	0.379	INTRON sick
2R	6016574	2R_6016574_SNP [dm3] 2R_10129069_SNP [dm6]	G	A	1.584e^-5	0.379	INTRON gem	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	16289158	2R_16289158_DEL [dm3] 2R_20401653_DEL [dm6]	CCG	C	1.594e^-5	0.379	INTERGENIC
3L	8323320	3L_8323320_SNP [dm3] 3L_8330220_SNP [dm6]	T	A	1.616e^-5	0.379	UTR_3_PRIME CG34462
X	18636906	X_18636906_SNP [dm3] X_18742873_SNP [dm6]	C	T	1.618e^-5	0.379	INTERGENIC
3L	7309218	3L_7309218_SNP [dm3] 3L_7316118_SNP [dm6]	G	A	1.651e^-5	0.382	INTERGENIC
2L	21055222	2L_21055222_SNP [dm3] 2L_21055222_SNP [dm6]	A	T	1.694e^-5	0.384	NON_SYNONYMOUS_CODING Itgbetanu	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	19804790	2L_19804790_SNP [dm3] 2L_19804790_SNP [dm6]	C	G	1.699e^-5	0.384	INTRON sick
3L	2645600	3L_2645600_SNP [dm3] 3L_2645600_SNP [dm6]	A	T	1.734e^-5	0.387	INTRON CG1143	TF binding site mE1_TFBS_cad
2L	19802421	2L_19802421_SNP [dm3] 2L_19802421_SNP [dm6]	A	C	1.794e^-5	0.392	INTRON sick
3R	4512365	3R_4512365_SNP [dm3] 3R_8686643_SNP [dm6]	G	A	1.807e^-5	0.392	UPSTREAM CR44937 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6726397	3R_6726397_SNP [dm3] 3R_10900675_SNP [dm6]	A	G	1.839e^-5	0.392	INTERGENIC
3L	18575735	3L_18575735_SNP [dm3] 3L_18582635_SNP [dm6]	C	A	1.846e^-5	0.392	UPSTREAM CR45435 INTERGENIC
2R	8134266	2R_8134266_SNP [dm3] 2R_12246761_SNP [dm6]	C	T	1.864e^-5	0.392	EXON CR44315
2L	14150313	2L_14150313_SNP [dm3] 2L_14150313_SNP [dm6]	T	C	1.883e^-5	0.392	INTRON CG17341
3L	1564534	3L_1564534_INS [dm3] 3L_1564534_INS [dm6]	A	AA	1.907e^-5	0.393	UPSTREAM CG12003 INTRON CG7879
3L	4556696	3L_4556696_SNP [dm3] 3L_4556696_SNP [dm6]	T	A	1.946e^-5	0.394	UPSTREAM CG42540 INTRON CG42540
2L	7270458	2L_7270458_SNP [dm3] 2L_7270458_SNP [dm6]	A	G	1.957e^-5	0.394	INTRON Wnt4
3L	712501	3L_712501_SNP [dm3] 3L_712501_SNP [dm6]	C	G	1.985e^-5	0.396	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	4737892	3L_4737892_SNP [dm3] 3L_4737892_SNP [dm6]	T	C	2.040e^-5	0.403	INTRON RhoGEF64C
2R	6966595	2R_6966595_SNP [dm3] 2R_11079090_SNP [dm6]	A	G	2.082e^-5	0.407	INTRON luna	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5143723	3R_5143723_SNP [dm3] 3R_9318001_SNP [dm6]	A	C	2.203e^-5	0.426	INTRON CG8861
2L	8507679	2L_8507679_SNP [dm3] 2L_8507679_SNP [dm6]	T	A	2.225e^-5	0.426	UPSTREAM Dh31 INTERGENIC
3L	13310271	3L_13310271_SNP [dm3] 3L_13317171_SNP [dm6]	C	T	2.262e^-5	0.428	INTERGENIC
2L	19802933	2L_19802933_SNP [dm3] 2L_19802933_SNP [dm6]	G	A	2.316e^-5	0.433	INTRON sick
3L	712322	3L_712322_SNP [dm3] 3L_712322_SNP [dm6]	A	G	2.338e^-5	0.433	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	19803822	2L_19803822_SNP [dm3] 2L_19803822_SNP [dm6]	G	A	2.412e^-5	0.433	INTRON sick
3R	22141543	3R_22141543_SNP [dm3] 3R_26315821_SNP [dm6]	T	A	2.416e^-5	0.433	INTERGENIC
3R	4382182	3R_4382182_SNP [dm3] 3R_8556460_SNP [dm6]	G	A	2.462e^-5	0.433	INTERGENIC
3R	4340520	3R_4340520_SNP [dm3] 3R_8514798_SNP [dm6]	T	A	2.470e^-5	0.433	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	14815465	3L_14815465_SNP [dm3] 3L_14822365_SNP [dm6]	G	A	2.480e^-5	0.433	INTRON CG17839
X	5228684	X_5228684_SNP [dm3] X_5334651_SNP [dm6]	C	T	2.494e^-5	0.433	DOWNSTREAM CanB INTERGENIC
2L	4512888	2L_4512888_SNP [dm3] 2L_4512888_SNP [dm6]	G	A	2.514e^-5	0.433	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1321787	3L_1321787_SNP [dm3] 3L_1321787_SNP [dm6]	C	T	2.517e^-5	0.433	DOWNSTREAM CG9184 INTRON Myo61F
2R	6963718	2R_6963718_SNP [dm3] 2R_11076213_SNP [dm6]	A	G	2.543e^-5	0.433	INTRON luna	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16008401	2L_16008401_SNP [dm3] 2L_16008401_SNP [dm6]	C	T	2.678e^-5	0.452	INTRON beat-Ic	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	4934322	3R_4934322_SNP [dm3] 3R_9108600_SNP [dm6]	C	T	2.725e^-5	0.456	INTRON pum
2L	19803606	2L_19803606_SNP [dm3] 2L_19803606_SNP [dm6]	C	T	2.754e^-5	0.457	INTRON sick
3L	5886015	3L_5886015_SNP [dm3] 3L_5892915_SNP [dm6]	C	G	2.849e^-5	0.467	INTERGENIC
3L	11708590	3L_11708590_SNP [dm3] 3L_11715490_SNP [dm6]	G	A	2.865e^-5	0.467	UPSTREAM CG14132 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	19855421	2L_19855421_SNP [dm3] 2L_19855421_SNP [dm6]	T	C	2.892e^-5	0.467	INTRON sick
2R	19502631	2R_19502631_SNP [dm3] 2R_23615108_SNP [dm6]	T	C	2.986e^-5	0.477	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
X	12772793	X_12772793_SNP [dm3] X_12878760_SNP [dm6]	T	A	3.001e^-5	0.477	INTRON Pde9
X	5438371	X_5438371_SNP [dm3] X_5544338_SNP [dm6]	C	A	3.046e^-5	0.48	INTRON Vsx2
2R	6962276	2R_6962276_SNP [dm3] 2R_11074771_SNP [dm6]	A	G	3.072e^-5	0.48	INTRON luna
2L	19802314	2L_19802314_SNP [dm3] 2L_19802314_SNP [dm6]	C	T	3.184e^-5	0.491	INTRON sick
3L	4556656	3L_4556656_SNP [dm3] 3L_4556656_SNP [dm6]	C	G	3.194e^-5	0.491	UPSTREAM CG42540 INTRON CG42540
3R	4934321	3R_4934321_SNP [dm3] 3R_9108599_SNP [dm6]	G	A	3.303e^-5	0.494	INTRON pum
X	21063578	X_21063578_SNP [dm3] X_21192551_SNP [dm6]	G	A	3.313e^-5	0.494	UPSTREAM CG14579 INTERGENIC
3L	781267	3L_781267_SNP [dm3] 3L_781267_SNP [dm6]	G	A	3.487e^-5	0.494	INTERGENIC
3L	12615818	3L_12615818_SNP [dm3] 3L_12622718_SNP [dm6]	C	T	3.489e^-5	0.494	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	1828555	3L_1828555_SNP [dm3] 3L_1828555_SNP [dm6]	C	A	3.493e^-5	0.494	INTRON Cpr62Ba
3L	7309128	3L_7309128_SNP [dm3] 3L_7316028_SNP [dm6]	G	T	3.539e^-5	0.494	INTERGENIC	insulator Insulator_Class_II.mE01
3L	7309138	3L_7309138_SNP [dm3] 3L_7316038_SNP [dm6]	G	A	3.539e^-5	0.494	INTERGENIC
3L	1564489	3L_1564489_SNP [dm3] 3L_1564489_SNP [dm6]	A	G	3.674e^-5	0.494	UPSTREAM CG12003 INTRON CG7879
2L	14689608	2L_14689608_SNP [dm3] 2L_14689608_SNP [dm6]	A	G	3.676e^-5	0.494	UPSTREAM osp INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	2737430	2L_2737430_SNP [dm3] 2L_2737430_SNP [dm6]	T	C	3.694e^-5	0.494	SYNONYMOUS_CODING CG31689 UPSTREAM mir-4914
2L	19794789	2L_19794789_SNP [dm3] 2L_19794789_SNP [dm6]	T	A	3.738e^-5	0.494	SYNONYMOUS_CODING fs_2_ltoPP43	TF binding site BDTNP1_TFBS_dl
3L	7562859	3L_7562859_SNP [dm3] 3L_7569759_SNP [dm6]	G	A	3.767e^-5	0.494	DOWNSTREAM frac INTERGENIC
X	3035763	X_3035763_DEL [dm3] X_3141730_DEL [dm6]	GG	G	3.784e^-5	0.494	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	18386875	X_18386875_SNP [dm3] X_18492842_SNP [dm6]	C	T	3.802e^-5	0.494	UPSTREAM CG15044 DOWNSTREAM CG15043 INTERGENIC
2L	19803809	2L_19803809_SNP [dm3] 2L_19803809_SNP [dm6]	C	T	3.823e^-5	0.494	INTRON sick
2L	8619047	2L_8619047_SNP [dm3] 2L_8619047_SNP [dm6]	C	T	3.838e^-5	0.494	UPSTREAM tRNA:CR31602 INTRON Sema-1a
3R	25621372	3R_25621372_SNP [dm3] 3R_29795650_SNP [dm6]	C	T	3.870e^-5	0.494	SYNONYMOUS_CODING sro DOWNSTREAM CG7837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17590899	2R_17590899_SNP [dm3] 2R_21703394_SNP [dm6]	G	A	3.927e^-5	0.494	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
2L	3825068	2L_3825068_SNP [dm3] 2L_3825068_SNP [dm6]	T	G	3.969e^-5	0.494	UPSTREAM slp1 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	5138023	3R_5138023_SNP [dm3] 3R_9312301_SNP [dm6]	T	G	3.971e^-5	0.494	INTRON CG8861	TF binding site BDTNP1_TFBS_twi
X	9388923	X_9388923_SNP [dm3] X_9494890_SNP [dm6]	C	A	3.982e^-5	0.494	INTRON mgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	7202010	2L_7202010_SNP [dm3] 2L_7202010_SNP [dm6]	C	T	3.987e^-5	0.494	INTRON CG4502
X	18463732	X_18463732_SNP [dm3] X_18569699_SNP [dm6]	A	G	3.989e^-5	0.494	INTRON Bx	TF binding site BDTNP1_TFBS_da
3L	12615819	3L_12615819_SNP [dm3] 3L_12622719_SNP [dm6]	G	A	3.993e^-5	0.494	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	14695058	2L_14695058_SNP [dm3] 2L_14695058_SNP [dm6]	G	A	3.998e^-5	0.494	INTERGENIC
3L	8151400	3L_8151400_SNP [dm3] 3L_8158300_SNP [dm6]	A	T	4.033e^-5	0.494	INTRON CG42445
X	18464186	X_18464186_SNP [dm3] X_18570153_SNP [dm6]	C	A	4.042e^-5	0.494	INTRON Bx	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
3L	12615763	3L_12615763_SNP [dm3] 3L_12622663_SNP [dm6]	T	C	4.067e^-5	0.494	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25672069	3R_25672069_SNP [dm3] 3R_29846347_SNP [dm6]	T	A	4.098e^-5	0.494	INTRON Cad99C
3L	12615760	3L_12615760_SNP [dm3] 3L_12622660_SNP [dm6]	G	A	4.099e^-5	0.494	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25974815	3R_25974815_SNP [dm3] 3R_30149093_SNP [dm6]	T	A	4.124e^-5	0.494	INTRON AdoR
2L	10730523	2L_10730523_SNP [dm3] 2L_10730523_SNP [dm6]	C	T	4.137e^-5	0.494	SYNONYMOUS_CODING CG17118 DOWNSTREAM CG6443 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26669557	3R_26669557_SNP [dm3] 3R_30843835_SNP [dm6]	G	C	4.150e^-5	0.494	INTERGENIC
3L	7479945	3L_7479945_SNP [dm3] 3L_7486845_SNP [dm6]	T	C	4.185e^-5	0.494	SYNONYMOUS_CODING mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19835455	2L_19835455_SNP [dm3] 2L_19835455_SNP [dm6]	A	C	4.188e^-5	0.494	INTRON sick
3L	19496781	3L_19496781_SNP [dm3] 3L_19503681_SNP [dm6]	G	A	4.206e^-5	0.494	START_GAINED CG9452 UTR_5_PRIME CG9452
3R	14370392	3R_14370392_INS [dm3] 3R_18544670_INS [dm6]	C	CAGATTTAAT	4.238e^-5	0.494	INTRON fru
3R	12739886	3R_12739886_SNP [dm3] 3R_16914164_SNP [dm6]	A	G	4.248e^-5	0.494	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	9377935	3L_9377935_SNP [dm3] 3L_9384835_SNP [dm6]	A	G	4.269e^-5	0.494	UTR_3_PRIME Hsp27 DOWNSTREAM CR43483	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	7309092	3L_7309092_SNP [dm3] 3L_7315992_SNP [dm6]	A	T	4.270e^-5	0.494	INTERGENIC
3L	4737859	3L_4737859_SNP [dm3] 3L_4737859_SNP [dm6]	A	G	4.309e^-5	0.496	INTRON RhoGEF64C
3L	1339044	3L_1339044_SNP [dm3] 3L_1339044_SNP [dm6]	T	C	4.355e^-5	0.497	SYNONYMOUS_CODING l_3_02640 DOWNSTREAM CG2199	TF binding site mE1_TFBS_chinmo
2L	10560968	2L_10560968_SNP [dm3] 2L_10560968_SNP [dm6]	T	A	4.371e^-5	0.497	INTRON Trim9
3L	9688709	3L_9688709_SNP [dm3] 3L_9695609_SNP [dm6]	C	G	4.455e^-5	0.497	UPSTREAM CG6767 INTRON CG6767 EXON CR45121	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19502482	2R_19502482_SNP [dm3] 2R_23614959_SNP [dm6]	T	C	4.465e^-5	0.497	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
2R	18542253	2R_18542253_SNP [dm3] 2R_22654748_SNP [dm6]	A	T	4.524e^-5	0.497	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG30196 & 2 others INTERGENIC	TF binding site mE1_TFBS_cad
2L	15549826	2L_15549826_SNP [dm3] 2L_15549826_SNP [dm6]	C	G	4.530e^-5	0.497	UPSTREAM CR45728 & 1 other INTERGENIC
3L	4619448	3L_4619448_SNP [dm3] 3L_4619448_SNP [dm6]	C	T	4.545e^-5	0.497	INTRON Src64B
2L	19798779	2L_19798779_SNP [dm3] 2L_19798779_SNP [dm6]	C	A	4.552e^-5	0.497	INTRON sick
3L	8207850	3L_8207850_SNP [dm3] 3L_8214750_SNP [dm6]	T	C	4.564e^-5	0.497	UPSTREAM CG8012 INTERGENIC
X	5228937	X_5228937_INS [dm3] X_5334904_INS [dm6]	C	CTACACTCGCAAAAAAAAAA...	4.593e^-5	0.498	DOWNSTREAM CanB INTERGENIC
2R	11330408	2R_11330408_SNP [dm3] 2R_15442903_SNP [dm6]	C	T	4.748e^-5	0.507	INTRON CG43729
2R	19504706	2R_19504706_SNP [dm3] 2R_23617183_SNP [dm6]	T	G	4.768e^-5	0.507	UPSTREAM CG17664 INTERGENIC	TF binding site mE1_TFBS_sens
2L	6499760	2L_6499760_SNP [dm3] 2L_6499760_SNP [dm6]	G	A	4.801e^-5	0.507	SYNONYMOUS_CODING CG31637	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	782103	3L_782103_SNP [dm3] 3L_782103_SNP [dm6]	T	A	4.809e^-5	0.507	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna
2R	11330161	2R_11330161_SNP [dm3] 2R_15442656_SNP [dm6]	G	A	4.816e^-5	0.507	INTRON CG43729
3L	7479848	3L_7479848_SNP [dm3] 3L_7486748_SNP [dm6]	C	A	4.930e^-5	0.516	SPLICE_SITE_REGION mthl6 INTRON mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6246307	2L_6246307_SNP [dm3] 2L_6246307_SNP [dm6]	G	T	4.962e^-5	0.517	INTERGENIC
X	14844134	X_14844134_SNP [dm3] X_14950101_SNP [dm6]	G	T	5.019e^-5	0.52	INTRON pdgy	TF binding site BDTNP1_TFBS_dl
2R	6383082	2R_6383082_SNP [dm3] 2R_10495577_SNP [dm6]	C	T	5.099e^-5	0.521	DOWNSTREAM lola INTRON lola
3L	711093	3L_711093_SNP [dm3] 3L_711093_SNP [dm6]	C	G	5.120e^-5	0.521	NON_SYNONYMOUS_CODING CG13896 UPSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
2L	3825075	2L_3825075_SNP [dm3] 2L_3825075_SNP [dm6]	T	A	5.132e^-5	0.521	UPSTREAM slp1 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	3795416	3L_3795416_SNP [dm3] 3L_3795416_SNP [dm6]	C	A	5.144e^-5	0.521	UPSTREAM CG32264 INTRON CG32264
3L	1321681	3L_1321681_SNP [dm3] 3L_1321681_SNP [dm6]	G	T	5.231e^-5	0.522	DOWNSTREAM CG9184 INTRON Myo61F
2L	10730526	2L_10730526_SNP [dm3] 2L_10730526_SNP [dm6]	A	G	5.238e^-5	0.522	SYNONYMOUS_CODING CG17118 DOWNSTREAM CG6443 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	20605740	2R_20605740_SNP [dm3] 2R_24718217_SNP [dm6]	G	C	5.259e^-5	0.522	INTRON Mid1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11330698	2R_11330698_SNP [dm3] 2R_15443193_SNP [dm6]	G	T	5.268e^-5	0.522	INTRON CG43729
3L	713048	3L_713048_SNP [dm3] 3L_713048_SNP [dm6]	G	C	5.291e^-5	0.522	INTERGENIC	TF binding site mE1_TFBS_sens
3L	11621955	3L_11621955_DEL [dm3] 3L_11628855_DEL [dm6]	ATTA	G	5.408e^-5	0.522	UPSTREAM mir-3642 INTRON CG18815
3L	11621966	3L_11621966_DEL [dm3] 3L_11628866_DEL [dm6]	GCAAACAAAACTTACCT...	G	5.408e^-5	0.522	UPSTREAM mir-3642 INTRON CG18815
2L	19802397	2L_19802397_SNP [dm3] 2L_19802397_SNP [dm6]	T	A	5.411e^-5	0.522	INTRON sick
3R	5959569	3R_5959569_SNP [dm3] 3R_10133847_SNP [dm6]	G	T	5.429e^-5	0.522	INTRON tws	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	1828561	3L_1828561_SNP [dm3] 3L_1828561_SNP [dm6]	C	A	5.494e^-5	0.522	INTRON Cpr62Ba
3R	5955981	3R_5955981_SNP [dm3] 3R_10130259_SNP [dm6]	T	C	5.548e^-5	0.522	INTRON tws	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	11885434	2R_11885434_SNP [dm3] 2R_15997929_SNP [dm6]	C	T	5.563e^-5	0.522	SYNONYMOUS_CODING ATPCL	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6100199	3L_6100199_SNP [dm3] 3L_6107099_SNP [dm6]	C	T	5.570e^-5	0.522	INTRON Ets65A	TF binding site mE1_TFBS_cad
2R	9147422	2R_9147422_SNP [dm3] 2R_13259917_SNP [dm6]	A	T	5.580e^-5	0.522	UPSTREAM CG42319 INTERGENIC
3L	22043005	3L_22043005_SNP [dm3] 3L_22049905_SNP [dm6]	A	T	5.673e^-5	0.522	INTRON Oct-TyrR
3L	7991476	3L_7991476_SNP [dm3] 3L_7998376_SNP [dm6]	C	T	5.697e^-5	0.522	INTRON nmo	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2L	19802451	2L_19802451_SNP [dm3] 2L_19802451_SNP [dm6]	T	G	5.709e^-5	0.522	INTRON sick
2R	9147026	2R_9147026_SNP [dm3] 2R_13259521_SNP [dm6]	T	A	5.765e^-5	0.522	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3R	23777427	3R_23777427_SNP [dm3] 3R_27951705_SNP [dm6]	A	G	5.794e^-5	0.522	SYNONYMOUS_CODING Gp93 DOWNSTREAM CG4951	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5438331	X_5438331_SNP [dm3] X_5544298_SNP [dm6]	A	C	5.813e^-5	0.522	INTRON Vsx2
X	16154167	X_16154167_SNP [dm3] X_16260134_SNP [dm6]	T	A	5.819e^-5	0.522	INTERGENIC
2R	9147435	2R_9147435_SNP [dm3] 2R_13259930_SNP [dm6]	T	A	5.855e^-5	0.522	UPSTREAM CG42319 INTERGENIC
3L	711108	3L_711108_SNP [dm3] 3L_711108_SNP [dm6]	G	T	5.911e^-5	0.522	NON_SYNONYMOUS_CODING CG13896 UPSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
X	5228746	X_5228746_SNP [dm3] X_5334713_SNP [dm6]	G	C	5.922e^-5	0.522	DOWNSTREAM CanB INTERGENIC
2R	9147438	2R_9147438_SNP [dm3] 2R_13259933_SNP [dm6]	G	A	5.995e^-5	0.522	UPSTREAM CG42319 INTERGENIC
2L	1195489	2L_1195489_SNP [dm3] 2L_1195489_SNP [dm6]	T	C	6.000e^-5	0.522	INTRON CG5001
2L	19802454	2L_19802454_SNP [dm3] 2L_19802454_SNP [dm6]	G	T	6.000e^-5	0.522	INTRON sick
3R	17353856	3R_17353856_SNP [dm3] 3R_21528134_SNP [dm6]	C	T	6.002e^-5	0.522	UTR_3_PRIME CG7956 DOWNSTREAM CG7956	TF binding site BDTNP1_TFBS_slp1
3L	7257545	3L_7257545_SNP [dm3] 3L_7264445_SNP [dm6]	T	A	6.019e^-5	0.522	UPSTREAM CG14830 INTERGENIC
3L	7480613	3L_7480613_SNP [dm3] 3L_7487513_SNP [dm6]	A	G	6.047e^-5	0.522	INTRON mthl6
2L	16135147	2L_16135147_SNP [dm3] 2L_16135147_SNP [dm6]	G	A	6.061e^-5	0.522	DOWNSTREAM CR44871 & 1 other INTRON CG34168
3R	23935303	3R_23935303_SNP [dm3] 3R_28109581_SNP [dm6]	C	A	6.075e^-5	0.522	INTERGENIC
3L	4647084	3L_4647084_INS [dm3] 3L_4647084_INS [dm6]	T	TC	6.087e^-5	0.522	INTRON axo
2L	4624701	2L_4624701_SNP [dm3] 2L_4624701_SNP [dm6]	C	T	6.145e^-5	0.522	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	9849152	X_9849152_SNP [dm3] X_9955119_SNP [dm6]	T	A	6.158e^-5	0.522	INTERGENIC
3L	2645067	3L_2645067_SNP [dm3] 3L_2645067_SNP [dm6]	C	T	6.158e^-5	0.522	UPSTREAM CG1143 INTERGENIC
3R	4339924	3R_4339924_SNP [dm3] 3R_8514202_SNP [dm6]	A	G	6.251e^-5	0.528	INTERGENIC
3L	14813709	3L_14813709_SNP [dm3] 3L_14820609_SNP [dm6]	T	C	6.277e^-5	0.528	INTRON CG17839
2L	21258500	2L_21258500_SNP [dm3] 2L_21258500_SNP [dm6]	T	C	6.360e^-5	0.532	UTR_3_PRIME Hr39 DOWNSTREAM Hr39	TF binding site BDTNP1_TFBS_dl
2L	19802424	2L_19802424_SNP [dm3] 2L_19802424_SNP [dm6]	A	T	6.416e^-5	0.533	INTRON sick
3R	14771210	3R_14771210_SNP [dm3] 3R_18945488_SNP [dm6]	G	A	6.475e^-5	0.533	INTRON CG42613
3L	14811233	3L_14811233_SNP [dm3] 3L_14818133_SNP [dm6]	C	T	6.477e^-5	0.533	INTRON CG17839
3R	8780521	3R_8780521_SNP [dm3] 3R_12954799_SNP [dm6]	C	G	6.512e^-5	0.533	INTRON grsm
X	3035757	X_3035757_SNP [dm3] X_3141724_SNP [dm6]	A	T	6.514e^-5	0.533	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	4341488	3R_4341488_SNP [dm3] 3R_8515766_SNP [dm6]	G	A	6.587e^-5	0.535	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	2310890	X_2310890_SNP [dm3] X_2416857_SNP [dm6]	C	G	6.588e^-5	0.535	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	21065012	2L_21065012_SNP [dm3] 2L_21065012_SNP [dm6]	T	A	6.622e^-5	0.535	INTRON CG9265
2L	3238066	2L_3238066_SNP [dm3] 2L_3238066_SNP [dm6]	C	T	6.684e^-5	0.538	INTERGENIC
2L	8668772	2L_8668772_SNP [dm3] 2L_8668772_SNP [dm6]	C	T	6.728e^-5	0.539	UTR_3_PRIME Sema-1a DOWNSTREAM Sema-1a
2R	9147063	2R_9147063_SNP [dm3] 2R_13259558_SNP [dm6]	G	A	6.783e^-5	0.541	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3L	1734682	3L_1734682_DEL [dm3] 3L_1734682_DEL [dm6]	AA	A	6.848e^-5	0.544	INTRON Oseg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10627152	3L_10627152_SNP [dm3] 3L_10634052_SNP [dm6]	C	T	6.900e^-5	0.546	DOWNSTREAM E_z_ & 1 other INTRON CG34001
3L	781279	3L_781279_SNP [dm3] 3L_781279_SNP [dm6]	G	A	7.018e^-5	0.546	INTERGENIC
3R	26805366	3R_26805366_DEL [dm3] 3R_30979644_DEL [dm6]	GG	G	7.019e^-5	0.546	INTRON 5-HT7
2R	3935024	2R_3935024_SNP [dm3] 2R_8047519_SNP [dm6]	C	T	7.080e^-5	0.546	INTERGENIC
2L	19753855	2L_19753855_SNP [dm3] 2L_19753855_SNP [dm6]	C	G	7.097e^-5	0.546	SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8507658	2L_8507658_SNP [dm3] 2L_8507658_SNP [dm6]	G	C	7.142e^-5	0.546	UPSTREAM Dh31 INTERGENIC
3R	14141759	3R_14141759_INS [dm3] 3R_18316037_INS [dm6]	T	TGT	7.156e^-5	0.546	DOWNSTREAM CG31235 INTERGENIC
3L	7479963	3L_7479963_SNP [dm3] 3L_7486863_SNP [dm6]	G	T	7.187e^-5	0.546	SYNONYMOUS_CODING mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14844256	X_14844256_SNP [dm3] X_14950223_SNP [dm6]	C	T	7.241e^-5	0.546	INTRON pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	20528065	2L_20528065_DEL [dm3] 2L_20528065_DEL [dm6]	TCATGATGTTT...	T	7.249e^-5	0.546	INTERGENIC
2R	12110433	2R_12110433_SNP [dm3] 2R_16222928_SNP [dm6]	T	A	7.267e^-5	0.546	UPSTREAM CG7798 DOWNSTREAM CG15706 EXON CR43898
2L	19840678	2L_19840678_SNP [dm3] 2L_19840678_SNP [dm6]	A	G	7.418e^-5	0.546	INTRON sick
2L	4512885	2L_4512885_SNP [dm3] 2L_4512885_SNP [dm6]	C	T	7.424e^-5	0.546	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15460518	2R_15460518_SNP [dm3] 2R_19573013_SNP [dm6]	A	G	7.450e^-5	0.546	INTRON sm	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	3287601	X_3287601_SNP [dm3] X_3393568_SNP [dm6]	A	T	7.486e^-5	0.546	INTRON CR44999 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1195440	2L_1195440_SNP [dm3] 2L_1195440_SNP [dm6]	C	T	7.537e^-5	0.546	INTRON CG5001
3R	4339621	3R_4339621_SNP [dm3] 3R_8513899_SNP [dm6]	C	G	7.559e^-5	0.546	UPSTREAM Or85c INTERGENIC
3L	15716292	3L_15716292_SNP [dm3] 3L_15723192_SNP [dm6]	C	A	7.571e^-5	0.546	SYNONYMOUS_CODING comm
3R	11511634	3R_11511634_SNP [dm3] 3R_15685912_SNP [dm6]	T	A	7.657e^-5	0.546	INTRON pxb	TF binding site BDTNP1_TFBS_hb
2R	19308098	2R_19308098_SNP [dm3] 2R_23420575_SNP [dm6]	A	G	7.713e^-5	0.546	UPSTREAM CG9812 DOWNSTREAM CG9815 INTERGENIC
3R	21989388	3R_21989388_SNP [dm3] 3R_26163666_SNP [dm6]	A	T	7.764e^-5	0.546	INTERGENIC
2L	19798335	2L_19798335_SNP [dm3] 2L_19798335_SNP [dm6]	A	G	7.782e^-5	0.546	INTRON sick
2L	698684	2L_698684_DEL [dm3] 2L_698684_DEL [dm6]	AA	A	7.786e^-5	0.546	INTRON ds
3L	1564689	3L_1564689_SNP [dm3] 3L_1564689_SNP [dm6]	T	C	7.798e^-5	0.546	UPSTREAM CG12003 INTRON CG7879
2R	9460681	2R_9460681_SNP [dm3] 2R_13573176_SNP [dm6]	G	T	7.862e^-5	0.546	UPSTREAM CG42807 DOWNSTREAM CG42808 INTERGENIC
2R	8576516	2R_8576516_SNP [dm3] 2R_12689011_SNP [dm6]	T	C	7.876e^-5	0.546	SYNONYMOUS_CODING CG30053 DOWNSTREAM CG13148	TF binding site mE1_TFBS_HSA
2L	1834297	2L_1834297_SNP [dm3] 2L_1834297_SNP [dm6]	A	G	7.909e^-5	0.546	INTERGENIC
X	2310627	X_2310627_SNP [dm3] X_2416594_SNP [dm6]	T	C	7.937e^-5	0.546	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_sens
2L	8507668	2L_8507668_SNP [dm3] 2L_8507668_SNP [dm6]	G	C	7.946e^-5	0.546	UPSTREAM Dh31 INTERGENIC
2L	19798193	2L_19798193_SNP [dm3] 2L_19798193_SNP [dm6]	G	A	7.965e^-5	0.546	INTRON sick
3R	13019603	3R_13019603_SNP [dm3] 3R_17193881_SNP [dm6]	A	G	8.025e^-5	0.546	INTRON Mur89F
2R	14458123	2R_14458123_SNP [dm3] 2R_18570618_SNP [dm6]	A	G	8.048e^-5	0.546	INTRON GEFmeso
3R	23777355	3R_23777355_SNP [dm3] 3R_27951633_SNP [dm6]	C	T	8.077e^-5	0.546	SYNONYMOUS_CODING Gp93 DOWNSTREAM CG4951	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9147038	2R_9147038_SNP [dm3] 2R_13259533_SNP [dm6]	G	A	8.093e^-5	0.546	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3R	15214249	3R_15214249_SNP [dm3] 3R_19388527_SNP [dm6]	C	T	8.095e^-5	0.546	SYNONYMOUS_CODING CG3734 DOWNSTREAM CR34285 INTRON Ino80	TF binding site mE1_TFBS_sens
2R	11330066	2R_11330066_SNP [dm3] 2R_15442561_SNP [dm6]	G	T	8.135e^-5	0.546	INTRON CG43729
X	14511435	X_14511435_SNP [dm3] X_14617402_SNP [dm6]	A	T	8.165e^-5	0.546	INTRON NetA
3R	10212782	3R_10212782_SNP [dm3] 3R_14387060_SNP [dm6]	G	C	8.194e^-5	0.546	INTERGENIC
2L	15257503	2L_15257503_SNP [dm3] 2L_15257503_SNP [dm6]	G	A	8.197e^-5	0.546	SYNONYMOUS_CODING yuri UTR_3_PRIME l_2_35Cc DOWNSTREAM l_2_35Cc
3L	4534212	3L_4534212_SNP [dm3] 3L_4534212_SNP [dm6]	G	T	8.207e^-5	0.546	INTRON CG11353
3L	712622	3L_712622_SNP [dm3] 3L_712622_SNP [dm6]	G	A	8.235e^-5	0.546	UPSTREAM CG13896 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	25973021	3R_25973021_SNP [dm3] 3R_30147299_SNP [dm6]	T	C	8.260e^-5	0.546	INTRON AdoR
3R	25613518	3R_25613518_SNP [dm3] 3R_29787796_SNP [dm6]	G	A	8.377e^-5	0.546	INTRON kay
X	14844238	X_14844238_SNP [dm3] X_14950205_SNP [dm6]	A	G	8.402e^-5	0.546	INTRON pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	8447278	2L_8447278_SNP [dm3] 2L_8447278_SNP [dm6]	T	G	8.407e^-5	0.546	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	8447265	2L_8447265_SNP [dm3] 2L_8447265_SNP [dm6]	A	G	8.418e^-5	0.546	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	14843656	X_14843656_SNP [dm3] X_14949623_SNP [dm6]	A	T	8.452e^-5	0.546	INTRON pdgy
3R	21861258	3R_21861258_SNP [dm3] 3R_26035536_SNP [dm6]	A	T	8.531e^-5	0.546	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19503959	2R_19503959_SNP [dm3] 2R_23616436_SNP [dm6]	T	G	8.531e^-5	0.546	INTRON CG17664
3R	15046636	3R_15046636_SNP [dm3] 3R_19220914_SNP [dm6]	C	A	8.551e^-5	0.546	INTRON vib
2R	17727974	2R_17727974_SNP [dm3] 2R_21840469_SNP [dm6]	A	G	8.565e^-5	0.546	INTERGENIC
3L	12615803	3L_12615803_SNP [dm3] 3L_12622703_SNP [dm6]	C	T	8.566e^-5	0.546	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	19737343	2L_19737343_SNP [dm3] 2L_19737343_SNP [dm6]	G	T	8.580e^-5	0.546	DOWNSTREAM Nf-YB INTERGENIC
X	7867165	X_7867165_SNP [dm3] X_7973132_SNP [dm6]	A	T	8.590e^-5	0.546	INTRON sn	TF binding site mE1_TFBS_HSA
X	8291487	X_8291487_SNP [dm3] X_8397454_SNP [dm6]	T	A	8.591e^-5	0.546	UTR_3_PRIME CG15345
3R	19126952	3R_19126952_SNP [dm3] 3R_23301230_SNP [dm6]	G	A	8.675e^-5	0.546	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9823760	3R_9823760_SNP [dm3] 3R_13998038_SNP [dm6]	T	C	8.693e^-5	0.546	INTRON rdx	TF binding site mE1_TFBS_HSA
2L	17891639	2L_17891639_SNP [dm3] 2L_17891639_SNP [dm6]	A	C	8.721e^-5	0.546	INTERGENIC
3R	13019604	3R_13019604_INS [dm3] 3R_17193882_INS [dm6]	A	AACCTATTGAACCTATTGAA...	8.754e^-5	0.546	INTRON Mur89F
2R	14172514	2R_14172514_SNP [dm3] 2R_18285009_SNP [dm6]	T	A	8.761e^-5	0.546	DOWNSTREAM sbb INTRON sbb
3L	4556796	3L_4556796_INS [dm3] 3L_4556796_INS [dm6]	T	TA	8.767e^-5	0.546	UPSTREAM CG42540 INTRON CG42540
3R	15214327	3R_15214327_SNP [dm3] 3R_19388605_SNP [dm6]	C	T	8.812e^-5	0.546	SYNONYMOUS_CODING CG3734 INTRON Ino80	TF binding site mE1_TFBS_sens
3R	13175133	3R_13175133_SNP [dm3] 3R_17349411_SNP [dm6]	A	C	8.843e^-5	0.546	INTRON beat-IIa
3R	5138020	3R_5138020_SNP [dm3] 3R_9312298_SNP [dm6]	C	T	8.882e^-5	0.546	INTRON CG8861
2R	18542624	2R_18542624_SNP [dm3] 2R_22655119_SNP [dm6]	A	T	8.890e^-5	0.546	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other INTRON CG30196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9958271	2R_9958271_SNP [dm3] 2R_14070766_SNP [dm6]	A	G	8.911e^-5	0.546	INTRON Prosap
2R	9958274	2R_9958274_SNP [dm3] 2R_14070769_SNP [dm6]	T	A	8.911e^-5	0.546	INTRON Prosap
X	2698889	X_2698889_SNP [dm3] X_2804856_SNP [dm6]	G	T	8.922e^-5	0.546	INTRON kirre	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	781299	3L_781299_SNP [dm3] 3L_781299_SNP [dm6]	A	T	8.939e^-5	0.546	INTERGENIC
2L	19804784	2L_19804784_SNP [dm3] 2L_19804784_SNP [dm6]	A	C	9.012e^-5	0.546	INTRON sick
X	19218792	X_19218792_SNP [dm3] X_19324759_SNP [dm6]	A	G	9.047e^-5	0.546	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	4556835	3L_4556835_SNP [dm3] 3L_4556835_SNP [dm6]	T	C	9.070e^-5	0.546	UPSTREAM CG42540 INTRON CG42540
X	4557427	X_4557427_SNP [dm3] X_4663394_SNP [dm6]	G	A	9.070e^-5	0.546	INTRON CG3009
3R	2952106	3R_2952106_SNP [dm3] 3R_7126384_SNP [dm6]	G	A	9.077e^-5	0.546	UTR_3_PRIME CG10098 & 1 other
2L	6508953	2L_6508953_SNP [dm3] 2L_6508953_SNP [dm6]	G	A	9.144e^-5	0.546	UPSTREAM CR44775 INTRON CG31637	TF binding site BDTNP1_TFBS_hb
3L	1565411	3L_1565411_SNP [dm3] 3L_1565411_SNP [dm6]	C	T	9.167e^-5	0.546	START_GAINED CG12003 UTR_5_PRIME CG12003 INTRON CG7879	TF binding site mE1_TFBS_sens
3L	1151921	3L_1151921_SNP [dm3] 3L_1151921_SNP [dm6]	T	G	9.187e^-5	0.546	INTRON bab2
3R	10410917	3R_10410917_SNP [dm3] 3R_14585195_SNP [dm6]	A	T	9.189e^-5	0.546	INTRON stumps	TF binding site BDTNP1_TFBS_prd
2R	18540270	2R_18540270_SNP [dm3] 2R_22652765_SNP [dm6]	G	C	9.260e^-5	0.546	SYNONYMOUS_CODING Cyp6d2 UTR_3_PRIME nsr DOWNSTREAM nsr
2R	9147010	2R_9147010_SNP [dm3] 2R_13259505_SNP [dm6]	T	G	9.263e^-5	0.546	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3R	1686134	3R_1686134_SNP [dm3] 3R_5860412_SNP [dm6]	A	C	9.337e^-5	0.546	SPLICE_SITE_REGION CG2017 INTRON CG2017
2R	14312972	2R_14312972_SNP [dm3] 2R_18425467_SNP [dm6]	G	T	9.343e^-5	0.546	UTR_3_PRIME CG5174 UPSTREAM CG12263 INTRON CG5174	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	19308104	2R_19308104_SNP [dm3] 2R_23420581_SNP [dm6]	C	A	9.362e^-5	0.546	UPSTREAM CG9812 DOWNSTREAM CG9815 INTERGENIC
2L	20528001	2L_20528001_SNP [dm3] 2L_20528001_SNP [dm6]	T	C	9.374e^-5	0.546	INTERGENIC
3L	9686786	3L_9686786_SNP [dm3] 3L_9693686_SNP [dm6]	C	T	9.435e^-5	0.546	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	3914494	X_3914494_DEL [dm3] X_4020461_DEL [dm6]	CC	C	9.449e^-5	0.546	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	15213586	3L_15213586_SNP [dm3] 3L_15220486_SNP [dm6]	T	G	9.467e^-5	0.546	INTERGENIC
X	10543785	X_10543785_SNP [dm3] X_10649752_SNP [dm6]	T	C	9.524e^-5	0.546	INTRON X11Lbeta
2R	11327910	2R_11327910_SNP [dm3] 2R_15440405_SNP [dm6]	T	C	9.630e^-5	0.546	INTRON CG43729
3R	10201044	3R_10201044_DEL [dm3] 3R_14375322_DEL [dm6]	AATTG	A	9.632e^-5	0.546	DOWNSTREAM CR44943 INTERGENIC
3L	7257549	3L_7257549_SNP [dm3] 3L_7264449_SNP [dm6]	T	A	9.651e^-5	0.546	UPSTREAM CG14830 INTERGENIC
2R	18180957	2R_18180957_SNP [dm3] 2R_22293452_SNP [dm6]	C	T	9.652e^-5	0.546	START_GAINED CG5819 UTR_5_PRIME CG5819 INTRON CG5819
3L	4737951	3L_4737951_SNP [dm3] 3L_4737951_SNP [dm6]	C	A	9.681e^-5	0.546	INTRON RhoGEF64C
2R	8909448	2R_8909448_SNP [dm3] 2R_13021943_SNP [dm6]	A	G	9.725e^-5	0.546	INTERGENIC
2L	1754842	2L_1754842_SNP [dm3] 2L_1754842_SNP [dm6]	A	G	9.778e^-5	0.546	DOWNSTREAM Gr22f INTERGENIC
2R	11330036	2R_11330036_SNP [dm3] 2R_15442531_SNP [dm6]	G	C	9.852e^-5	0.546	INTRON CG43729
3R	11586547	3R_11586547_SNP [dm3] 3R_15760825_SNP [dm6]	G	A	9.853e^-5	0.546	INTERGENIC
3R	10201043	3R_10201043_SNP [dm3] 3R_14375321_SNP [dm6]	C	T	9.856e^-5	0.546	DOWNSTREAM CR44943 INTERGENIC
3L	712066	3L_712066_SNP [dm3] 3L_712066_SNP [dm6]	G	A	9.868e^-5	0.546	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	9147009	2R_9147009_SNP [dm3] 2R_13259504_SNP [dm6]	T	G	9.877e^-5	0.546	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3R	15134591	3R_15134591_SNP [dm3] 3R_19308869_SNP [dm6]	T	C	1.000e^-4	0.546	INTRON Dl
X	5438346	X_5438346_SNP [dm3] X_5544313_SNP [dm6]	G	A	1.000e^-4	0.546	INTRON Vsx2
3L	6479135	3L_6479135_SNP [dm3] 3L_6486035_SNP [dm6]	A	G	1.000e^-4	0.546	DOWNSTREAM CG10147 & 1 other INTERGENIC
X	9849318	X_9849318_DEL [dm3] X_9955285_DEL [dm6]	TCGACT	T	1.002e^-4	0.546	INTERGENIC
2R	19028840	2R_19028840_INS [dm3] 2R_23141317_INS [dm6]	T	TCCAT	1.002e^-4	0.546	UPSTREAM CG13544 & 1 other INTERGENIC
X	1196886	X_1196886_SNP [dm3] X_1302853_SNP [dm6]	T	C	1.002e^-4	0.546	INTRON DAAM	TF binding site mE1_TFBS_chinmo
2R	15461046	2R_15461046_SNP [dm3] 2R_19573541_SNP [dm6]	A	G	1.007e^-4	0.546	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25980453	3R_25980453_SNP [dm3] 3R_30154731_SNP [dm6]	A	C	1.008e^-4	0.546	INTRON CG11498	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	10201029	3R_10201029_SNP [dm3] 3R_14375307_SNP [dm6]	T	A	1.008e^-4	0.546	DOWNSTREAM CR44943 INTERGENIC
3L	14815037	3L_14815037_SNP [dm3] 3L_14821937_SNP [dm6]	A	C	1.022e^-4	0.546	INTRON CG17839
3L	22919731	3L_22919731_SNP [dm3] 3L_22926631_SNP [dm6]	A	C	1.023e^-4	0.546	INTERGENIC
3L	9299142	3L_9299142_SNP [dm3] 3L_9306042_SNP [dm6]	G	A	1.024e^-4	0.546	INTERGENIC
2L	19803156	2L_19803156_SNP [dm3] 2L_19803156_SNP [dm6]	T	G	1.027e^-4	0.546	INTRON sick
X	5809623	X_5809623_SNP [dm3] X_5915590_SNP [dm6]	T	C	1.028e^-4	0.546	UPSTREAM CG3011 DOWNSTREAM CR44108 INTRON CG3011
3L	22042964	3L_22042964_SNP [dm3] 3L_22049864_SNP [dm6]	C	G	1.029e^-4	0.546	INTRON Oct-TyrR
X	7897466	X_7897466_SNP [dm3] X_8003433_SNP [dm6]	T	C	1.030e^-4	0.546	INTRON Tbh
3R	21989378	3R_21989378_SNP [dm3] 3R_26163656_SNP [dm6]	G	A	1.035e^-4	0.546	INTERGENIC
3R	21989380	3R_21989380_SNP [dm3] 3R_26163658_SNP [dm6]	T	C	1.035e^-4	0.546	INTERGENIC
2R	14458134	2R_14458134_SNP [dm3] 2R_18570629_SNP [dm6]	C	A	1.035e^-4	0.546	INTRON GEFmeso
2R	9147482	2R_9147482_SNP [dm3] 2R_13259977_SNP [dm6]	A	G	1.037e^-4	0.546	UPSTREAM CG42319 INTERGENIC
2R	17590895	2R_17590895_SNP [dm3] 2R_21703390_SNP [dm6]	C	T	1.046e^-4	0.549	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
2R	17920112	2R_17920112_SNP [dm3] 2R_22032607_SNP [dm6]	G	T	1.052e^-4	0.551	INTRON CG34370
3L	6714238	3L_6714238_SNP [dm3] 3L_6721138_SNP [dm6]	T	C	1.057e^-4	0.551	INTERGENIC
3R	14933454	3R_14933454_SNP [dm3] 3R_19107732_SNP [dm6]	C	A	1.063e^-4	0.551	INTRON CG6040
2L	19802392	2L_19802392_SNP [dm3] 2L_19802392_SNP [dm6]	C	T	1.064e^-4	0.551	INTRON sick
3R	26618148	3R_26618148_SNP [dm3] 3R_30792426_SNP [dm6]	T	G	1.071e^-4	0.551	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
3R	25617852	3R_25617852_SNP [dm3] 3R_29792130_SNP [dm6]	G	C	1.073e^-4	0.551	NON_SYNONYMOUS_CODING kay	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12279058	2R_12279058_SNP [dm3] 2R_16391553_SNP [dm6]	C	T	1.083e^-4	0.551	INTRON Sema-2b	TF binding site mE1_TFBS_chinmo
2L	4512900	2L_4512900_SNP [dm3] 2L_4512900_SNP [dm6]	C	T	1.092e^-4	0.551	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4324850	2L_4324850_SNP [dm3] 2L_4324850_SNP [dm6]	T	C	1.095e^-4	0.551	UTR_5_PRIME CG16857
X	18659700	X_18659700_SNP [dm3] X_18765667_SNP [dm6]	A	T	1.096e^-4	0.551	INTRON CCKLR-17D3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12610871	3L_12610871_SNP [dm3] 3L_12617771_SNP [dm6]	T	A	1.096e^-4	0.551	INTRON caup	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3825069	2L_3825069_SNP [dm3] 2L_3825069_SNP [dm6]	T	C	1.097e^-4	0.551	UPSTREAM slp1 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	18985584	2R_18985584_SNP [dm3] 2R_23098061_SNP [dm6]	T	C	1.097e^-4	0.551	INTERGENIC
3L	2645081	3L_2645081_SNP [dm3] 3L_2645081_SNP [dm6]	A	G	1.100e^-4	0.551	UPSTREAM CG1143 INTERGENIC
3L	7257565	3L_7257565_SNP [dm3] 3L_7264465_SNP [dm6]	C	T	1.101e^-4	0.551	UPSTREAM CG14830 INTERGENIC
3L	9688724	3L_9688724_SNP [dm3] 3L_9695624_SNP [dm6]	T	A	1.102e^-4	0.551	UPSTREAM CG6767 INTRON CG6767 EXON CR45121	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1321892	3L_1321892_SNP [dm3] 3L_1321892_SNP [dm6]	T	G	1.104e^-4	0.551	UTR_3_PRIME CG9184 DOWNSTREAM CR45166 INTRON Myo61F	TF binding site mE1_TFBS_cad
3L	1321896	3L_1321896_SNP [dm3] 3L_1321896_SNP [dm6]	C	T	1.104e^-4	0.551	UTR_3_PRIME CG9184 DOWNSTREAM CR45166 INTRON Myo61F	TF binding site mE1_TFBS_cad
2L	7264376	2L_7264376_SNP [dm3] 2L_7264376_SNP [dm6]	G	A	1.107e^-4	0.551	INTRON Wnt4	TF binding site mE1_TFBS_HSA
3L	9726588	3L_9726588_SNP [dm3] 3L_9733488_SNP [dm6]	G	A	1.109e^-4	0.551	DOWNSTREAM mir-4986 & 1 other INTRON CG6749
3R	12509405	3R_12509405_SNP [dm3] 3R_16683683_SNP [dm6]	C	A	1.111e^-4	0.551	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	6357935	X_6357935_SNP [dm3] X_6463902_SNP [dm6]	A	G	1.120e^-4	0.553	DOWNSTREAM CG42340 INTRON CG42340
3R	22671390	3R_22671390_SNP [dm3] 3R_26845668_SNP [dm6]	A	G	1.125e^-4	0.553	INTRON Lerp
3L	551174	3L_551174_SNP [dm3] 3L_551174_SNP [dm6]	T	A	1.125e^-4	0.553	INTRON hipk	TF binding site BDTNP1_TFBS_dl
2L	19742727	2L_19742727_SNP [dm3] 2L_19742727_SNP [dm6]	C	T	1.129e^-4	0.553	UPSTREAM CR44906 DOWNSTREAM CG10631 INTERGENIC
3L	4841826	3L_4841826_SNP [dm3] 3L_4841826_SNP [dm6]	T	C	1.130e^-4	0.553	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	13570329	3R_13570329_SNP [dm3] 3R_17744607_SNP [dm6]	A	C	1.142e^-4	0.555	INTRON TyrRII	TF binding site mE1_TFBS_cad
3R	15134572	3R_15134572_SNP [dm3] 3R_19308850_SNP [dm6]	C	T	1.146e^-4	0.555	INTRON Dl
3L	9491503	3L_9491503_SNP [dm3] 3L_9498403_SNP [dm6]	T	C	1.159e^-4	0.555	INTRON path
2L	7202011	2L_7202011_SNP [dm3] 2L_7202011_SNP [dm6]	G	A	1.160e^-4	0.555	INTRON CG4502
2R	17727818	2R_17727818_SNP [dm3] 2R_21840313_SNP [dm6]	A	T	1.162e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19505508	2R_19505508_SNP [dm3] 2R_23617985_SNP [dm6]	T	G	1.164e^-4	0.555	INTERGENIC
3L	13316140	3L_13316140_SNP [dm3] 3L_13323040_SNP [dm6]	G	A	1.165e^-4	0.555	INTERGENIC
2L	15255898	2L_15255898_SNP [dm3] 2L_15255898_SNP [dm6]	T	G	1.168e^-4	0.555	SYNONYMOUS_CODING Pol32 UPSTREAM l_2_35Cc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	1865057	3R_1865057_SNP [dm3] 3R_6039335_SNP [dm6]	A	G	1.173e^-4	0.555	INTERGENIC
2L	20991674	2L_20991674_SNP [dm3] 2L_20991674_SNP [dm6]	C	A	1.173e^-4	0.555	INTRON CG42238
3L	441402	3L_441402_SNP [dm3] 3L_441402_SNP [dm6]	C	G	1.173e^-4	0.555	UPSTREAM klar INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_Trl
2R	8608211	2R_8608211_SNP [dm3] 2R_12720706_SNP [dm6]	T	C	1.173e^-4	0.555	INTRON CG42663
2R	8608213	2R_8608213_DEL [dm3] 2R_12720708_DEL [dm6]	TT	T	1.173e^-4	0.555	INTRON CG42663
2R	9147034	2R_9147034_SNP [dm3] 2R_13259529_SNP [dm6]	G	T	1.175e^-4	0.555	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3L	7257534	3L_7257534_SNP [dm3] 3L_7264434_SNP [dm6]	T	A	1.183e^-4	0.556	UPSTREAM CG14830 INTERGENIC
3L	7257559	3L_7257559_SNP [dm3] 3L_7264459_SNP [dm6]	G	A	1.184e^-4	0.556	UPSTREAM CG14830 INTERGENIC
2R	8576600	2R_8576600_SNP [dm3] 2R_12689095_SNP [dm6]	A	G	1.186e^-4	0.556	SYNONYMOUS_CODING CG30053 DOWNSTREAM CG13148 & 1 other	TF binding site mE1_TFBS_HSA
3R	13897848	3R_13897848_SNP [dm3] 3R_18072126_SNP [dm6]	G	A	1.191e^-4	0.556	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19835414	2L_19835414_SNP [dm3] 2L_19835414_SNP [dm6]	C	T	1.195e^-4	0.556	INTRON sick
X	14844263	X_14844263_SNP [dm3] X_14950230_SNP [dm6]	A	C	1.203e^-4	0.556	INTRON pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	16376688	2L_16376688_SNP [dm3] 2L_16376688_SNP [dm6]	A	T	1.207e^-4	0.556	INTERGENIC
3L	9687137	3L_9687137_SNP [dm3] 3L_9694037_SNP [dm6]	T	C	1.216e^-4	0.556	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	9687160	3L_9687160_SNP [dm3] 3L_9694060_SNP [dm6]	G	T	1.216e^-4	0.556	UPSTREAM CR45121 INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	3680449	3L_3680449_SNP [dm3] 3L_3680449_SNP [dm6]	G	A	1.218e^-4	0.556	INTERGENIC	TF binding site mE1_TFBS_cad
3R	27111842	3R_27111842_SNP [dm3] 3R_31286120_SNP [dm6]	A	C	1.219e^-4	0.556	INTERGENIC
2L	7922249	2L_7922249_SNP [dm3] 2L_7922249_SNP [dm6]	G	A	1.238e^-4	0.556	INTRON Snoo
3L	22044066	3L_22044066_SNP [dm3] 3L_22050966_SNP [dm6]	T	A	1.238e^-4	0.556	INTRON Oct-TyrR
3R	17359459	3R_17359459_SNP [dm3] 3R_21533737_SNP [dm6]	A	T	1.240e^-4	0.556	UPSTREAM CR43372 & 1 other INTERGENIC
2R	9263659	2R_9263659_SNP [dm3] 2R_13376154_SNP [dm6]	C	A	1.244e^-4	0.556	UTR_3_PRIME CG10814	TF binding site mE1_TFBS_chinmo
2L	8493565	2L_8493565_SNP [dm3] 2L_8493565_SNP [dm6]	G	C	1.250e^-4	0.556	INTRON Dh31
3L	9298626	3L_9298626_SNP [dm3] 3L_9305526_SNP [dm6]	G	T	1.250e^-4	0.556	INTERGENIC
3L	11621381	3L_11621381_SNP [dm3] 3L_11628281_SNP [dm6]	G	T	1.255e^-4	0.556	DOWNSTREAM PCID2 INTRON CG18815	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	18542610	2R_18542610_DEL [dm3] 2R_22655105_DEL [dm6]	GTATTGGGGCTC...	G	1.256e^-4	0.556	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other INTRON CG30196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1733503	3L_1733503_SNP [dm3] 3L_1733503_SNP [dm6]	G	A	1.259e^-4	0.556	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15046806	3R_15046806_SNP [dm3] 3R_19221084_SNP [dm6]	A	G	1.260e^-4	0.556	INTRON vib
2R	11330331	2R_11330331_SNP [dm3] 2R_15442826_SNP [dm6]	A	G	1.261e^-4	0.556	INTRON CG43729
2R	11327929	2R_11327929_SNP [dm3] 2R_15440424_SNP [dm6]	G	T	1.261e^-4	0.556	INTRON CG43729
2R	15743118	2R_15743118_SNP [dm3] 2R_19855613_SNP [dm6]	T	C	1.265e^-4	0.556	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9888384	2L_9888384_INS [dm3] 2L_9888384_INS [dm6]	T	TCCT	1.275e^-4	0.556	DOWNSTREAM CR44701 INTRON FKBP59	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	22274717	3R_22274717_SNP [dm3] 3R_26448995_SNP [dm6]	C	A	1.277e^-4	0.556	UPSTREAM Hex-t1 DOWNSTREAM tx INTERGENIC
2L	16376690	2L_16376690_DEL [dm3] 2L_16376690_DEL [dm6]	AATATATAT	A	1.278e^-4	0.556	INTERGENIC
2L	18489220	2L_18489220_SNP [dm3] 2L_18489220_SNP [dm6]	C	T	1.290e^-4	0.556	SYNONYMOUS_CODING kon	TF binding site mE1_TFBS_sens
2R	3603547	2R_3603547_SNP [dm3] 2R_7716042_SNP [dm6]	T	G	1.296e^-4	0.556	NON_SYNONYMOUS_CODING CG1946 DOWNSTREAM CG18812	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	4952865	2R_4952865_SNP [dm3] 2R_9065360_SNP [dm6]	G	A	1.298e^-4	0.556	INTRON ana	regulatory region REDfly_CRMs
3R	20661715	3R_20661715_SNP [dm3] 3R_24835993_SNP [dm6]	T	A	1.304e^-4	0.556	UPSTREAM sosie INTRON sosie EXON CR45216	TF binding site BDTNP1_TFBS_dl
2L	19841561	2L_19841561_SNP [dm3] 2L_19841561_SNP [dm6]	C	A	1.309e^-4	0.556	INTRON sick
3L	711035	3L_711035_SNP [dm3] 3L_711035_SNP [dm6]	A	G	1.310e^-4	0.556	SYNONYMOUS_CODING CG13896 UPSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
X	9816859	X_9816859_DEL [dm3] X_9922826_DEL [dm6]	CC	C	1.311e^-4	0.556	INTERGENIC
3L	18010104	3L_18010104_SNP [dm3] 3L_18017004_SNP [dm6]	T	G	1.312e^-4	0.556	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
2R	15071554	2R_15071554_SNP [dm3] 2R_19184049_SNP [dm6]	G	A	1.312e^-4	0.556	INTRON hppy
X	3894992	X_3894992_SNP [dm3] X_4000959_SNP [dm6]	G	A	1.316e^-4	0.556	DOWNSTREAM CR43298 INTERGENIC
3R	24412989	3R_24412989_SNP [dm3] 3R_28587267_SNP [dm6]	T	C	1.318e^-4	0.556	EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	18542312	2R_18542312_SNP [dm3] 2R_22654807_SNP [dm6]	C	G	1.321e^-4	0.556	UTR_3_PRIME CG30196 UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other	TF binding site mE1_TFBS_cad
2L	8448106	2L_8448106_SNP [dm3] 2L_8448106_SNP [dm6]	G	A	1.324e^-4	0.556	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18478641	3R_18478641_SNP [dm3] 3R_22652919_SNP [dm6]	G	T	1.327e^-4	0.556	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20321310	3R_20321310_SNP [dm3] 3R_24495588_SNP [dm6]	C	T	1.337e^-4	0.556	INTERGENIC	TF binding site mE1_TFBS_cad
2L	9487588	2L_9487588_SNP [dm3] 2L_9487588_SNP [dm6]	A	G	1.338e^-4	0.556	INTERGENIC
2L	16102044	2L_16102044_DEL [dm3] 2L_16102044_DEL [dm6]	AG	A	1.345e^-4	0.556	INTERGENIC
2L	19798565	2L_19798565_SNP [dm3] 2L_19798565_SNP [dm6]	T	G	1.347e^-4	0.556	INTRON sick
3L	6100247	3L_6100247_SNP [dm3] 3L_6107147_SNP [dm6]	C	T	1.348e^-4	0.556	INTRON Ets65A	TF binding site mE1_TFBS_cad
2R	19289455	2R_19289455_SNP [dm3] 2R_23401932_SNP [dm6]	T	C	1.349e^-4	0.556	INTRON CG3520	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	1321740	3L_1321740_SNP [dm3] 3L_1321740_SNP [dm6]	G	A	1.349e^-4	0.556	DOWNSTREAM CG9184 INTRON Myo61F
3L	10627138	3L_10627138_SNP [dm3] 3L_10634038_SNP [dm6]	A	C	1.351e^-4	0.556	DOWNSTREAM E_z_ & 1 other INTRON CG34001
3L	10627139	3L_10627139_SNP [dm3] 3L_10634039_SNP [dm6]	C	A	1.351e^-4	0.556	DOWNSTREAM E_z_ & 1 other INTRON CG34001
3L	711025	3L_711025_SNP [dm3] 3L_711025_SNP [dm6]	T	G	1.351e^-4	0.556	SYNONYMOUS_CODING CG13896 UPSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
X	9849341	X_9849341_SNP [dm3] X_9955308_SNP [dm6]	C	T	1.357e^-4	0.556	INTERGENIC
3R	22542460	3R_22542460_SNP [dm3] 3R_26716738_SNP [dm6]	A	G	1.363e^-4	0.556	SYNONYMOUS_CODING CG6425	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19493098	2R_19493098_SNP [dm3] 2R_23605575_SNP [dm6]	A	T	1.368e^-4	0.556	UPSTREAM CG17664 DOWNSTREAM CG17662 INTRON CG17664
3R	12488148	3R_12488148_SNP [dm3] 3R_16662426_SNP [dm6]	C	A	1.368e^-4	0.556	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3910709	3L_3910709_SNP [dm3] 3L_3910709_SNP [dm6]	G	T	1.369e^-4	0.556	UTR_3_PRIME Eip63F-1 UPSTREAM mge DOWNSTREAM Eip63F-1
3L	1321771	3L_1321771_SNP [dm3] 3L_1321771_SNP [dm6]	A	G	1.370e^-4	0.556	DOWNSTREAM CG9184 INTRON Myo61F
3L	1321779	3L_1321779_SNP [dm3] 3L_1321779_SNP [dm6]	A	G	1.370e^-4	0.556	DOWNSTREAM CG9184 INTRON Myo61F
3L	708572	3L_708572_SNP [dm3] 3L_708572_SNP [dm6]	T	A	1.379e^-4	0.556	UPSTREAM CG13895 DOWNSTREAM CkIIalpha-i3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
X	6956997	X_6956997_SNP [dm3] X_7062964_SNP [dm6]	T	C	1.382e^-4	0.556	INTRON CG12541
3R	23777424	3R_23777424_SNP [dm3] 3R_27951702_SNP [dm6]	C	T	1.388e^-4	0.556	SYNONYMOUS_CODING Gp93 DOWNSTREAM CG4951	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2645611	3L_2645611_SNP [dm3] 3L_2645611_SNP [dm6]	C	A	1.390e^-4	0.556	INTRON CG1143	TF binding site mE1_TFBS_cad
2L	19836530	2L_19836530_SNP [dm3] 2L_19836530_SNP [dm6]	A	G	1.392e^-4	0.556	INTRON sick	TF binding site mE1_TFBS_cad
3L	709523	3L_709523_SNP [dm3] 3L_709523_SNP [dm6]	T	A	1.395e^-4	0.556	INTRON CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
2R	4952874	2R_4952874_SNP [dm3] 2R_9065369_SNP [dm6]	G	A	1.399e^-4	0.556	INTRON ana	regulatory region REDfly_CRMs
3L	7257568	3L_7257568_SNP [dm3] 3L_7264468_SNP [dm6]	G	A	1.399e^-4	0.556	UPSTREAM CG14830 INTERGENIC
2R	6929352	2R_6929352_SNP [dm3] 2R_11041847_SNP [dm6]	A	T	1.401e^-4	0.556	INTRON luna	TF binding site mE1_TFBS_cad
X	3142079	X_3142079_SNP [dm3] X_3248046_SNP [dm6]	A	C	1.405e^-4	0.556	DOWNSTREAM Pig1 INTRON dnc
3R	25974904	3R_25974904_SNP [dm3] 3R_30149182_SNP [dm6]	C	T	1.406e^-4	0.556	UTR_5_PRIME AdoR
2L	19765108	2L_19765108_DEL [dm3] 2L_19765108_DEL [dm6]	CG	A	1.407e^-4	0.556	UPSTREAM fbp DOWNSTREAM bsh INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	14385310	3L_14385310_INS [dm3] 3L_14392210_INS [dm6]	T	TGCTCTTAA	1.408e^-4	0.556	INTERGENIC
3R	22160103	3R_22160103_SNP [dm3] 3R_26334381_SNP [dm6]	A	T	1.408e^-4	0.556	INTRON CG33970
3R	3275554	3R_3275554_SNP [dm3] 3R_7449832_SNP [dm6]	T	C	1.411e^-4	0.556	INTERGENIC
2L	19803402	2L_19803402_SNP [dm3] 2L_19803402_SNP [dm6]	T	C	1.418e^-4	0.556	INTRON sick
2L	8448559	2L_8448559_SNP [dm3] 2L_8448559_SNP [dm6]	C	T	1.418e^-4	0.556	SYNONYMOUS_CODING U26
2R	18172591	2R_18172591_SNP [dm3] 2R_22285086_SNP [dm6]	A	C	1.419e^-4	0.556	INTRON dve	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	19802476	2L_19802476_SNP [dm3] 2L_19802476_SNP [dm6]	G	A	1.419e^-4	0.556	INTRON sick
2L	15281202	2L_15281202_DEL [dm3] 2L_15281202_DEL [dm6]	CC	T	1.432e^-4	0.556	DOWNSTREAM CR45349 INTERGENIC
2L	16219177	2L_16219177_SNP [dm3] 2L_16219177_SNP [dm6]	A	T	1.433e^-4	0.556	INTERGENIC
2L	9850607	2L_9850607_SNP [dm3] 2L_9850607_SNP [dm6]	T	C	1.434e^-4	0.556	INTRON nAChRalpha6
3L	11723827	3L_11723827_SNP [dm3] 3L_11730727_SNP [dm6]	T	C	1.434e^-4	0.556	SYNONYMOUS_CODING CG32088
3L	4619439	3L_4619439_SNP [dm3] 3L_4619439_SNP [dm6]	T	A	1.437e^-4	0.556	INTRON Src64B
3R	12508942	3R_12508942_SNP [dm3] 3R_16683220_SNP [dm6]	G	A	1.437e^-4	0.556	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	1195508	2L_1195508_SNP [dm3] 2L_1195508_SNP [dm6]	C	T	1.438e^-4	0.556	INTRON CG5001
2L	20528126	2L_20528126_SNP [dm3] 2L_20528126_SNP [dm6]	C	T	1.443e^-4	0.556	INTERGENIC
2R	5263252	2R_5263252_SNP [dm3] 2R_9375747_SNP [dm6]	G	A	1.447e^-4	0.556	INTRON CG13954
3R	21814680	3R_21814680_SNP [dm3] 3R_25988958_SNP [dm6]	A	G	1.448e^-4	0.556	SYNONYMOUS_CODING Nf1
3R	21814732	3R_21814732_SNP [dm3] 3R_25989010_SNP [dm6]	T	A	1.448e^-4	0.556	INTRON Nf1
X	2814871	X_2814871_INS [dm3] X_2920838_INS [dm6]	T	TTT	1.448e^-4	0.556	INTRON kirre & 1 other
X	2814875	X_2814875_SNP [dm3] X_2920842_SNP [dm6]	T	C	1.448e^-4	0.556	INTRON kirre & 1 other
3L	12121430	3L_12121430_SNP [dm3] 3L_12128330_SNP [dm6]	T	C	1.448e^-4	0.556	NON_SYNONYMOUS_CODING CG34241 UPSTREAM Ir68b
3R	4400876	3R_4400876_INS [dm3] 3R_8575154_INS [dm6]	T	TT	1.451e^-4	0.556	INTERGENIC
3L	16202307	3L_16202307_SNP [dm3] 3L_16209207_SNP [dm6]	T	C	1.462e^-4	0.559	INTERGENIC	TF binding site mE1_TFBS_cad
2L	7206690	2L_7206690_SNP [dm3] 2L_7206690_SNP [dm6]	G	A	1.465e^-4	0.559	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784	TF binding site mE1_TFBS_sens
2R	12696827	2R_12696827_SNP [dm3] 2R_16809322_SNP [dm6]	C	A	1.475e^-4	0.562	INTERGENIC
3R	5709131	3R_5709131_SNP [dm3] 3R_9883409_SNP [dm6]	C	G	1.480e^-4	0.563	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1564511	3L_1564511_SNP [dm3] 3L_1564511_SNP [dm6]	A	G	1.483e^-4	0.563	UPSTREAM CG12003 INTRON CG7879
3R	21344893	3R_21344893_SNP [dm3] 3R_25519171_SNP [dm6]	T	A	1.487e^-4	0.563	INTRON msi
2L	19841437	2L_19841437_SNP [dm3] 2L_19841437_SNP [dm6]	G	A	1.497e^-4	0.566	INTRON sick
3L	5651486	3L_5651486_SNP [dm3] 3L_5658386_SNP [dm6]	A	G	1.503e^-4	0.566	UTR_5_PRIME sif INTRON sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9460682	2R_9460682_SNP [dm3] 2R_13573177_SNP [dm6]	T	G	1.503e^-4	0.566	UPSTREAM CG42807 DOWNSTREAM CG42808 INTERGENIC
3L	21138699	3L_21138699_INS [dm3] 3L_21145599_INS [dm6]	A	TG	1.519e^-4	0.571	INTRON Ac78C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
3L	14813948	3L_14813948_SNP [dm3] 3L_14820848_SNP [dm6]	G	A	1.523e^-4	0.571	INTRON CG17839
2L	2798026	2L_2798026_SNP [dm3] 2L_2798026_SNP [dm6]	T	A	1.527e^-4	0.571	INTRON Syt1 EXON CR43821	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	15299896	3R_15299896_INS [dm3] 3R_19474174_INS [dm6]	A	AAACA	1.532e^-4	0.572	INTRON Dys
2L	7207197	2L_7207197_SNP [dm3] 2L_7207197_SNP [dm6]	A	G	1.540e^-4	0.574	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784	TF binding site mE1_TFBS_sens
3R	10914325	3R_10914325_SNP [dm3] 3R_15088603_SNP [dm6]	A	G	1.545e^-4	0.574	INTRON CG6966
2L	8736380	2L_8736380_SNP [dm3] 2L_8736380_SNP [dm6]	G	C	1.552e^-4	0.574	UPSTREAM raw INTRON raw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6499550	2L_6499550_SNP [dm3] 2L_6499550_SNP [dm6]	C	T	1.558e^-4	0.574	SYNONYMOUS_CODING CG31637	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	5129982	3R_5129982_SNP [dm3] 3R_9304260_SNP [dm6]	C	G	1.562e^-4	0.574	INTRON CG8861
2L	8789696	2L_8789696_SNP [dm3] 2L_8789696_SNP [dm6]	A	C	1.563e^-4	0.574	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4619440	3L_4619440_SNP [dm3] 3L_4619440_SNP [dm6]	A	T	1.565e^-4	0.574	INTRON Src64B
2L	15031960	2L_15031960_SNP [dm3] 2L_15031960_SNP [dm6]	T	G	1.569e^-4	0.574	UPSTREAM CG31832 INTRON GABA-B-R1
3L	3680552	3L_3680552_SNP [dm3] 3L_3680552_SNP [dm6]	C	T	1.570e^-4	0.574	INTERGENIC	TF binding site mE1_TFBS_cad
2R	9776225	2R_9776225_SNP [dm3] 2R_13888720_SNP [dm6]	T	C	1.570e^-4	0.574	NON_SYNONYMOUS_CODING shot INTRON shot
3L	8460942	3L_8460942_SNP [dm3] 3L_8467842_SNP [dm6]	G	A	1.571e^-4	0.574	SYNONYMOUS_CODING Gug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5956262	2L_5956262_SNP [dm3] 2L_5956262_SNP [dm6]	A	G	1.579e^-4	0.576	START_GAINED CG13999 UTR_5_PRIME CG13999 UPSTREAM Vm26Ab DOWNSTREAM CG13998
3R	26320320	3R_26320320_SNP [dm3] 3R_30494598_SNP [dm6]	C	T	1.587e^-4	0.578	INTRON PH4alphaMP
2R	17795153	2R_17795153_SNP [dm3] 2R_21907648_SNP [dm6]	T	C	1.596e^-4	0.579	INTRON Fili
2L	8736382	2L_8736382_SNP [dm3] 2L_8736382_SNP [dm6]	C	A	1.596e^-4	0.579	UPSTREAM raw INTRON raw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15697740	2R_15697740_SNP [dm3] 2R_19810235_SNP [dm6]	T	G	1.604e^-4	0.581	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	21921317	X_21921317_SNP [dm3] X_22519481_SNP [dm6]	C	T	1.608e^-4	0.581	INTRON CG17600
2L	16239804	2L_16239804_SNP [dm3] 2L_16239804_SNP [dm6]	C	T	1.619e^-4	0.583	INTRON CG42817
3L	677700	3L_677700_SNP [dm3] 3L_677700_SNP [dm6]	T	A	1.620e^-4	0.583	DOWNSTREAM CG17129 INTERGENIC
2R	10897814	2R_10897814_SNP [dm3] 2R_15010309_SNP [dm6]	A	G	1.630e^-4	0.585	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_kn mE1_TFBS_Trl
3R	10951527	3R_10951527_SNP [dm3] 3R_15125805_SNP [dm6]	C	T	1.646e^-4	0.59	INTRON CG42788
2L	11352014	2L_11352014_SNP [dm3] 2L_11352014_SNP [dm6]	G	C	1.651e^-4	0.591	INTERGENIC	regulatory region REDfly_CRMs
X	6493132	X_6493132_SNP [dm3] X_6599099_SNP [dm6]	C	T	1.666e^-4	0.591	SYNONYMOUS_CODING APC7 UPSTREAM pigs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	20528122	2L_20528122_SNP [dm3] 2L_20528122_SNP [dm6]	T	C	1.667e^-4	0.591	INTERGENIC
2L	19799018	2L_19799018_SNP [dm3] 2L_19799018_SNP [dm6]	C	T	1.669e^-4	0.591	INTRON sick
3L	4443062	3L_4443062_SNP [dm3] 3L_4443062_SNP [dm6]	T	A	1.678e^-4	0.591	INTERGENIC
2L	4622633	2L_4622633_SNP [dm3] 2L_4622633_SNP [dm6]	A	T	1.680e^-4	0.591	INTERGENIC
2R	2058017	2R_2058017_DEL [dm3] 2R_6170512_DEL [dm6]	GCGATGCTTTG...	G	1.682e^-4	0.591	DOWNSTREAM tRNA:R2:42Ab & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3275544	3R_3275544_SNP [dm3] 3R_7449822_SNP [dm6]	G	A	1.687e^-4	0.591	INTERGENIC
X	5702342	X_5702342_SNP [dm3] X_5808309_SNP [dm6]	G	A	1.690e^-4	0.591	UPSTREAM Prosbeta2R1 INTERGENIC
2R	12851621	2R_12851621_SNP [dm3] 2R_16964116_SNP [dm6]	A	G	1.694e^-4	0.591	UPSTREAM CR44376 INTERGENIC
X	14842079	X_14842079_DEL [dm3] X_14948046_DEL [dm6]	AAAAGCAACA	A	1.701e^-4	0.591	INTRON pdgy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6016548	2R_6016548_SNP [dm3] 2R_10129043_SNP [dm6]	C	T	1.706e^-4	0.591	INTRON gem	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	23381450	3R_23381450_SNP [dm3] 3R_27555728_SNP [dm6]	C	G	1.708e^-4	0.591	INTRON Klp98A	TF binding site BDTNP1_TFBS_z
X	5447631	X_5447631_SNP [dm3] X_5553598_SNP [dm6]	A	C	1.709e^-4	0.591	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl
3L	4556798	3L_4556798_SNP [dm3] 3L_4556798_SNP [dm6]	C	A	1.714e^-4	0.591	UPSTREAM CG42540 INTRON CG42540
3L	9377453	3L_9377453_SNP [dm3] 3L_9384353_SNP [dm6]	T	C	1.719e^-4	0.591	SYNONYMOUS_CODING Hsp27	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	20332663	X_20332663_SNP [dm3] X_20461636_SNP [dm6]	C	T	1.721e^-4	0.591	INTRON CG32506
3R	6271359	3R_6271359_SNP [dm3] 3R_10445637_SNP [dm6]	T	C	1.724e^-4	0.591	INTERGENIC
3R	26618592	3R_26618592_SNP [dm3] 3R_30792870_SNP [dm6]	T	C	1.729e^-4	0.591	SYNONYMOUS_CODING wts	TF binding site mE1_TFBS_chinmo
2L	19840675	2L_19840675_SNP [dm3] 2L_19840675_SNP [dm6]	A	G	1.732e^-4	0.591	INTRON sick
2L	1604344	2L_1604344_SNP [dm3] 2L_1604344_SNP [dm6]	G	A	1.733e^-4	0.591	SPLICE_SITE_REGION haf INTRON CG31935 & 1 other
2R	18542589	2R_18542589_SNP [dm3] 2R_22655084_SNP [dm6]	A	G	1.741e^-4	0.591	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other INTRON CG30196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1195460	2L_1195460_SNP [dm3] 2L_1195460_SNP [dm6]	G	C	1.745e^-4	0.591	INTRON CG5001
2R	9775436	2R_9775436_SNP [dm3] 2R_13887931_SNP [dm6]	G	A	1.751e^-4	0.591	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9360941	2L_9360941_SNP [dm3] 2L_9360941_SNP [dm6]	T	A	1.752e^-4	0.591	INTERGENIC
X	5558236	X_5558236_SNP [dm3] X_5664203_SNP [dm6]	G	A	1.754e^-4	0.591	DOWNSTREAM Sirt4 EXON CR45520
X	14844277	X_14844277_SNP [dm3] X_14950244_SNP [dm6]	C	G	1.755e^-4	0.591	INTRON pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	13316145	3L_13316145_SNP [dm3] 3L_13323045_SNP [dm6]	A	T	1.759e^-4	0.591	INTERGENIC
2L	1195504	2L_1195504_SNP [dm3] 2L_1195504_SNP [dm6]	T	A	1.766e^-4	0.591	INTRON CG5001
3L	20945746	3L_20945746_SNP [dm3] 3L_20952646_SNP [dm6]	G	A	1.770e^-4	0.591	INTERGENIC
2L	958511	2L_958511_SNP [dm3] 2L_958511_SNP [dm6]	A	T	1.773e^-4	0.591	DOWNSTREAM CG4341 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1321838	3L_1321838_SNP [dm3] 3L_1321838_SNP [dm6]	C	T	1.775e^-4	0.591	UTR_3_PRIME CG9184 INTRON Myo61F
2R	5824313	2R_5824313_SNP [dm3] 2R_9936808_SNP [dm6]	C	G	1.776e^-4	0.591	INTRON Mef2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	4168695	2L_4168695_SNP [dm3] 2L_4168695_SNP [dm6]	T	A	1.777e^-4	0.591	INTERGENIC
3R	21989341	3R_21989341_SNP [dm3] 3R_26163619_SNP [dm6]	C	A	1.779e^-4	0.591	INTERGENIC
3L	4159131	3L_4159131_DEL [dm3] 3L_4159131_DEL [dm6]	GG	G	1.792e^-4	0.591	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
X	21921583	X_21921583_SNP [dm3] X_22519747_SNP [dm6]	T	G	1.795e^-4	0.591	INTRON CG17600
3R	13561793	3R_13561793_SNP [dm3] 3R_17736071_SNP [dm6]	T	C	1.797e^-4	0.591	UPSTREAM TyrRII INTERGENIC
3L	8472207	3L_8472207_SNP [dm3] 3L_8479107_SNP [dm6]	T	C	1.799e^-4	0.591	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9146868	2R_9146868_SNP [dm3] 2R_13259363_SNP [dm6]	C	T	1.802e^-4	0.591	UPSTREAM CG42319 DOWNSTREAM CG10799 INTERGENIC
3L	14672545	3L_14672545_SNP [dm3] 3L_14679445_SNP [dm6]	T	G	1.803e^-4	0.591	INTRON ome
3R	24516211	3R_24516211_SNP [dm3] 3R_28690489_SNP [dm6]	T	C	1.807e^-4	0.591	INTRON CG9990	TF binding site mE1_TFBS_inv
3L	22042974	3L_22042974_SNP [dm3] 3L_22049874_SNP [dm6]	C	T	1.808e^-4	0.591	INTRON Oct-TyrR
2R	19504761	2R_19504761_SNP [dm3] 2R_23617238_SNP [dm6]	T	C	1.808e^-4	0.591	UPSTREAM CG17664 INTERGENIC	TF binding site mE1_TFBS_sens
X	9849167	X_9849167_DEL [dm3] X_9955134_DEL [dm6]	TATTTAACTTCATATGCAGT...	T	1.809e^-4	0.591	INTERGENIC
2L	4824383	2L_4824383_SNP [dm3] 2L_4824383_SNP [dm6]	G	A	1.817e^-4	0.591	INTRON CG15628	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	4622688	2L_4622688_SNP [dm3] 2L_4622688_SNP [dm6]	T	A	1.825e^-4	0.591	INTERGENIC
3R	15214267	3R_15214267_SNP [dm3] 3R_19388545_SNP [dm6]	A	G	1.829e^-4	0.591	SYNONYMOUS_CODING CG3734 DOWNSTREAM CR34285 INTRON Ino80	TF binding site mE1_TFBS_sens
3L	13339531	3L_13339531_SNP [dm3] 3L_13346431_SNP [dm6]	G	T	1.833e^-4	0.591	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20688340	2L_20688340_SNP [dm3] 2L_20688340_SNP [dm6]	G	A	1.838e^-4	0.591	SPLICE_SITE_REGION Hr38 INTRON Hr38	TF binding site mE1_TFBS_chinmo
2L	696649	2L_696649_SNP [dm3] 2L_696649_SNP [dm6]	T	A	1.842e^-4	0.591	INTRON ds	TF binding site mE1_TFBS_Trl
2L	10560955	2L_10560955_SNP [dm3] 2L_10560955_SNP [dm6]	A	G	1.844e^-4	0.591	INTRON Trim9
3R	5144752	3R_5144752_SNP [dm3] 3R_9319030_SNP [dm6]	T	C	1.845e^-4	0.591	INTRON CG8861
3L	1744940	3L_1744940_SNP [dm3] 3L_1744940_SNP [dm6]	T	G	1.845e^-4	0.591	SYNONYMOUS_CODING Gk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8461269	3L_8461269_SNP [dm3] 3L_8468169_SNP [dm6]	G	A	1.848e^-4	0.591	SYNONYMOUS_CODING Gug	TF binding site mE1_TFBS_cad
2R	4950454	2R_4950454_SNP [dm3] 2R_9062949_SNP [dm6]	G	A	1.850e^-4	0.591	INTRON ana	regulatory region REDfly_CRMs
3L	4289756	3L_4289756_SNP [dm3] 3L_4289756_SNP [dm6]	C	A	1.852e^-4	0.591	SYNONYMOUS_CODING Hexo1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18489217	2L_18489217_SNP [dm3] 2L_18489217_SNP [dm6]	G	A	1.852e^-4	0.591	SYNONYMOUS_CODING kon	TF binding site mE1_TFBS_sens
3R	14771141	3R_14771141_SNP [dm3] 3R_18945419_SNP [dm6]	G	C	1.868e^-4	0.591	INTRON CG42613
3L	10408076	3L_10408076_SNP [dm3] 3L_10414976_SNP [dm6]	C	A	1.868e^-4	0.591	DOWNSTREAM CG12362 INTERGENIC
X	4560961	X_4560961_SNP [dm3] X_4666928_SNP [dm6]	T	A	1.870e^-4	0.591	UPSTREAM CG3009 DOWNSTREAM rap INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
3L	13549841	3L_13549841_SNP [dm3] 3L_13556741_SNP [dm6]	A	G	1.874e^-4	0.591	INTRON bru-3
X	13828560	X_13828560_SNP [dm3] X_13934527_SNP [dm6]	C	A	1.882e^-4	0.591	INTRON mamo	TF binding site mE1_TFBS_HSA
X	13349348	X_13349348_SNP [dm3] X_13455315_SNP [dm6]	T	C	1.886e^-4	0.591	INTRON Neto
2L	20128377	2L_20128377_SNP [dm3] 2L_20128377_SNP [dm6]	C	T	1.889e^-4	0.591	INTERGENIC
3L	7257564	3L_7257564_SNP [dm3] 3L_7264464_SNP [dm6]	C	T	1.890e^-4	0.591	UPSTREAM CG14830 INTERGENIC
3L	16202254	3L_16202254_SNP [dm3] 3L_16209154_SNP [dm6]	C	T	1.897e^-4	0.591	INTERGENIC	TF binding site mE1_TFBS_cad
2L	8956572	2L_8956572_SNP [dm3] 2L_8956572_SNP [dm6]	A	T	1.899e^-4	0.591	UPSTREAM CG31886 INTRON CG31886	TF binding site BDTNP1_TFBS_twi mE1_TFBS_zfh1
2L	17289734	2L_17289734_SNP [dm3] 2L_17289734_SNP [dm6]	G	C	1.902e^-4	0.591	INTERGENIC
3L	14835301	3L_14835301_SNP [dm3] 3L_14842201_SNP [dm6]	T	A	1.905e^-4	0.591	INTRON CG17839
3L	1564371	3L_1564371_SNP [dm3] 3L_1564371_SNP [dm6]	A	G	1.909e^-4	0.591	INTRON CG7879
3L	11524476	3L_11524476_SNP [dm3] 3L_11531376_SNP [dm6]	A	G	1.909e^-4	0.591	INTRON Mob2
3L	4649544	3L_4649544_SNP [dm3] 3L_4649544_SNP [dm6]	G	A	1.909e^-4	0.591	SYNONYMOUS_CODING CG32238 INTRON axo	TF binding site BDTNP1_TFBS_prd
3R	12023591	3R_12023591_SNP [dm3] 3R_16197869_SNP [dm6]	A	T	1.914e^-4	0.591	DOWNSTREAM CG6126 & 1 other INTERGENIC
2R	18674012	2R_18674012_SNP [dm3] 2R_22786507_SNP [dm6]	C	T	1.917e^-4	0.591	INTRON CG42260
2L	1474417	2L_1474417_SNP [dm3] 2L_1474417_SNP [dm6]	C	T	1.918e^-4	0.591	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16871558	X_16871558_SNP [dm3] X_16977525_SNP [dm6]	G	A	1.923e^-4	0.591	INTRON CG45002
2R	15434634	2R_15434634_SNP [dm3] 2R_19547129_SNP [dm6]	C	T	1.924e^-4	0.591	UPSTREAM sm INTRON sm
2R	16965216	2R_16965216_SNP [dm3] 2R_21077711_SNP [dm6]	A	C	1.924e^-4	0.591	INTRON Treh
3L	1734306	3L_1734306_SNP [dm3] 3L_1734306_SNP [dm6]	C	T	1.926e^-4	0.591	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14368783	3R_14368783_SNP [dm3] 3R_18543061_SNP [dm6]	A	G	1.926e^-4	0.591	INTRON fru
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	1.927e^-4	0.591	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7206708	2L_7206708_SNP [dm3] 2L_7206708_SNP [dm6]	G	A	1.929e^-4	0.591	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784	TF binding site mE1_TFBS_sens
3L	13310084	3L_13310084_DEL [dm3] 3L_13316984_DEL [dm6]	TA	T	1.932e^-4	0.591	INTERGENIC
2L	10560973	2L_10560973_DEL [dm3] 2L_10560973_DEL [dm6]	GTCCTAATTTGTTTATACA...	G	1.934e^-4	0.591	INTRON Trim9
2L	8448070	2L_8448070_SNP [dm3] 2L_8448070_SNP [dm6]	C	T	1.935e^-4	0.591	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13950559	2R_13950559_SNP [dm3] 2R_18063054_SNP [dm6]	A	T	1.936e^-4	0.591	INTRON CG34386
3R	15045771	3R_15045771_SNP [dm3] 3R_19220049_SNP [dm6]	A	T	1.936e^-4	0.591	INTRON vib
2R	17590890	2R_17590890_SNP [dm3] 2R_21703385_SNP [dm6]	A	C	1.943e^-4	0.591	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3R	21989351	3R_21989351_INS [dm3] 3R_26163629_INS [dm6]	A	ACTACTTAAAAGAGTAGC...	1.945e^-4	0.591	INTERGENIC
3R	21989354	3R_21989354_INS [dm3] 3R_26163632_INS [dm6]	T	TTTA	1.945e^-4	0.591	INTERGENIC
2L	698452	2L_698452_SNP [dm3] 2L_698452_SNP [dm6]	C	T	1.951e^-4	0.591	INTRON ds
3L	9726604	3L_9726604_SNP [dm3] 3L_9733504_SNP [dm6]	A	T	1.952e^-4	0.591	DOWNSTREAM mir-4986 & 1 other INTRON CG6749
3L	3966618	3L_3966618_DEL [dm3] 3L_3966618_DEL [dm6]	CCGCTGTCC	C	1.955e^-4	0.591	INTERGENIC
3R	25980401	3R_25980401_INS [dm3] 3R_30154679_INS [dm6]	T	TT	1.961e^-4	0.591	INTRON CG11498	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_cad
3L	781274	3L_781274_INS [dm3] 3L_781274_INS [dm6]	A	AT	1.962e^-4	0.591	INTERGENIC
3R	21393463	3R_21393463_SNP [dm3] 3R_25567741_SNP [dm6]	G	T	1.967e^-4	0.591	INTRON msi
2R	17932994	2R_17932994_SNP [dm3] 2R_22045489_SNP [dm6]	G	A	1.970e^-4	0.591	INTERGENIC
2L	10560917	2L_10560917_SNP [dm3] 2L_10560917_SNP [dm6]	A	T	1.970e^-4	0.591	INTRON Trim9
2L	16135142	2L_16135142_SNP [dm3] 2L_16135142_SNP [dm6]	C	T	1.975e^-4	0.591	DOWNSTREAM CR44871 & 1 other INTRON CG34168
3L	16016122	3L_16016122_SNP [dm3] 3L_16023022_SNP [dm6]	T	C	1.980e^-4	0.591	UPSTREAM Notum INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4622595	2L_4622595_SNP [dm3] 2L_4622595_SNP [dm6]	T	A	1.981e^-4	0.591	INTERGENIC
X	3518193	X_3518193_SNP [dm3] X_3624160_SNP [dm6]	C	T	1.981e^-4	0.591	INTRON AstA-R1
2L	4622584	2L_4622584_SNP [dm3] 2L_4622584_SNP [dm6]	A	T	1.984e^-4	0.591	INTERGENIC
X	7693237	X_7693237_SNP [dm3] X_7799204_SNP [dm6]	G	A	1.985e^-4	0.591	INTERGENIC
2L	20528124	2L_20528124_SNP [dm3] 2L_20528124_SNP [dm6]	C	T	1.992e^-4	0.591	INTERGENIC
3L	709549	3L_709549_SNP [dm3] 3L_709549_SNP [dm6]	A	T	1.995e^-4	0.591	SPLICE_SITE_REGION CkIIalpha-i3 INTRON CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3R	24806077	3R_24806077_SNP [dm3] 3R_28980355_SNP [dm6]	C	T	2.000e^-4	0.591	INTERGENIC
2R	10846199	2R_10846199_SNP [dm3] 2R_14958694_SNP [dm6]	T	C	2.002e^-4	0.591	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	20528128	2L_20528128_INS [dm3] 2L_20528128_INS [dm6]	T	TGA	2.004e^-4	0.591	INTERGENIC
2R	156485	2R_156485_SNP [dm3] 2R_4268980_SNP [dm6]	G	T	2.006e^-4	0.591	INTERGENIC
3R	21989336	3R_21989336_SNP [dm3] 3R_26163614_SNP [dm6]	T	C	2.009e^-4	0.591	INTERGENIC
3L	15507760	3L_15507760_SNP [dm3] 3L_15514660_SNP [dm6]	A	C	2.009e^-4	0.591	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1734626	3L_1734626_SNP [dm3] 3L_1734626_SNP [dm6]	G	C	2.011e^-4	0.591	SYNONYMOUS_CODING Oseg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20402476	3R_20402476_DEL [dm3] 3R_24576754_DEL [dm6]	TCGCAT	T	2.011e^-4	0.591	INTRON CG13624
X	19671159	X_19671159_SNP [dm3] X_19777126_SNP [dm6]	T	C	2.020e^-4	0.591	UTR_3_PRIME vfl INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	13137038	X_13137038_SNP [dm3] X_13243005_SNP [dm6]	A	G	2.023e^-4	0.591	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	6601300	2L_6601300_SNP [dm3] 2L_6601300_SNP [dm6]	T	A	2.023e^-4	0.591	UPSTREAM CG11319 INTERGENIC
X	7897437	X_7897437_SNP [dm3] X_8003404_SNP [dm6]	T	G	2.033e^-4	0.591	INTRON Tbh
3R	17942119	3R_17942119_SNP [dm3] 3R_22116397_SNP [dm6]	G	C	2.037e^-4	0.591	NON_SYNONYMOUS_CODING Ir94b
3L	13310093	3L_13310093_INS [dm3] 3L_13316993_INS [dm6]	T	TAAGTCTTTTA...	2.039e^-4	0.591	INTERGENIC
2L	19837239	2L_19837239_SNP [dm3] 2L_19837239_SNP [dm6]	C	G	2.040e^-4	0.591	INTRON sick	TF binding site mE1_TFBS_cad
3L	12615765	3L_12615765_DEL [dm3] 3L_12622665_DEL [dm6]	ATTTTTTTTTTCTTA...	A	2.044e^-4	0.591	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	7951192	3L_7951192_SNP [dm3] 3L_7958092_SNP [dm6]	A	T	2.047e^-4	0.591	INTERGENIC
2R	8815084	2R_8815084_SNP [dm3] 2R_12927579_SNP [dm6]	C	A	2.049e^-4	0.591	INTRON sug	TF binding site mE1_TFBS_cad
X	19921445	X_19921445_SNP [dm3] X_20027412_SNP [dm6]	T	C	2.066e^-4	0.591	INTRON Dop2R
2L	19803221	2L_19803221_SNP [dm3] 2L_19803221_SNP [dm6]	G	A	2.067e^-4	0.591	INTRON sick
2L	20528127	2L_20528127_SNP [dm3] 2L_20528127_SNP [dm6]	A	G	2.068e^-4	0.591	INTERGENIC
3L	428271	3L_428271_SNP [dm3] 3L_428271_SNP [dm6]	T	A	2.069e^-4	0.591	INTERGENIC
2L	14702724	2L_14702724_SNP [dm3] 2L_14702724_SNP [dm6]	C	G	2.076e^-4	0.591	INTERGENIC
2R	16340634	2R_16340634_SNP [dm3] 2R_20453129_SNP [dm6]	A	G	2.078e^-4	0.591	INTRON CG12484
3L	2645041	3L_2645041_SNP [dm3] 3L_2645041_SNP [dm6]	G	T	2.083e^-4	0.591	UPSTREAM CG1143 INTERGENIC
X	14845226	X_14845226_SNP [dm3] X_14951193_SNP [dm6]	T	C	2.084e^-4	0.591	UTR_5_PRIME pdgy UPSTREAM pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	16053170	2R_16053170_SNP [dm3] 2R_20165665_SNP [dm6]	T	C	2.086e^-4	0.591	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	14385307	3L_14385307_SNP [dm3] 3L_14392207_SNP [dm6]	A	G	2.090e^-4	0.591	INTERGENIC
3R	10373347	3R_10373347_SNP [dm3] 3R_14547625_SNP [dm6]	G	T	2.095e^-4	0.591	INTRON Pde6
3R	18480610	3R_18480610_SNP [dm3] 3R_22654888_SNP [dm6]	T	C	2.099e^-4	0.591	INTRON CG45058
2L	2347806	2L_2347806_SNP [dm3] 2L_2347806_SNP [dm6]	A	T	2.108e^-4	0.591	INTRON CG9967 & 1 other
3L	6131799	3L_6131799_SNP [dm3] 3L_6138699_SNP [dm6]	G	T	2.112e^-4	0.591	UPSTREAM Lcp65Ae DOWNSTREAM Cpr65Av INTERGENIC
2L	3437594	2L_3437594_SNP [dm3] 2L_3437594_SNP [dm6]	A	T	2.117e^-4	0.591	INTERGENIC
3R	3275312	3R_3275312_SNP [dm3] 3R_7449590_SNP [dm6]	G	T	2.117e^-4	0.591	INTERGENIC
X	10908770	X_10908770_SNP [dm3] X_11014737_SNP [dm6]	G	T	2.117e^-4	0.591	INTRON CG42339
2L	7202015	2L_7202015_SNP [dm3] 2L_7202015_SNP [dm6]	C	A	2.118e^-4	0.591	INTRON CG4502
2L	20528016	2L_20528016_SNP [dm3] 2L_20528016_SNP [dm6]	T	G	2.121e^-4	0.591	INTERGENIC
2L	2949570	2L_2949570_SNP [dm3] 2L_2949570_SNP [dm6]	T	C	2.122e^-4	0.591	SYNONYMOUS_CODING lilli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9513593	3L_9513593_SNP [dm3] 3L_9520493_SNP [dm6]	G	T	2.130e^-4	0.591	INTRON CG33700
2L	8448676	2L_8448676_SNP [dm3] 2L_8448676_SNP [dm6]	G	T	2.132e^-4	0.591	SYNONYMOUS_CODING U26
X	13137037	X_13137037_SNP [dm3] X_13243004_SNP [dm6]	C	T	2.132e^-4	0.591	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	24382496	3R_24382496_SNP [dm3] 3R_28556774_SNP [dm6]	C	G	2.132e^-4	0.591	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20528012	2L_20528012_SNP [dm3] 2L_20528012_SNP [dm6]	T	C	2.133e^-4	0.591	INTERGENIC
2R	6016861	2R_6016861_SNP [dm3] 2R_10129356_SNP [dm6]	T	G	2.139e^-4	0.591	INTRON gem
2L	20687881	2L_20687881_SNP [dm3] 2L_20687881_SNP [dm6]	A	G	2.139e^-4	0.591	SYNONYMOUS_CODING Hr38	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16135150	2L_16135150_SNP [dm3] 2L_16135150_SNP [dm6]	G	T	2.152e^-4	0.591	DOWNSTREAM CR44871 & 1 other INTRON CG34168
2R	7961237	2R_7961237_SNP [dm3] 2R_12073732_SNP [dm6]	G	A	2.158e^-4	0.591	INTRON CG8888
3L	22839526	3L_22839526_SNP [dm3] 3L_22846426_SNP [dm6]	T	C	2.158e^-4	0.591	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14135497	3L_14135497_SNP [dm3] 3L_14142397_SNP [dm6]	G	A	2.159e^-4	0.591	INTERGENIC	regulatory region REDfly_CRMs
2L	20527986	2L_20527986_SNP [dm3] 2L_20527986_SNP [dm6]	A	T	2.161e^-4	0.591	INTERGENIC
3L	7209302	3L_7209302_INS [dm3] 3L_7216202_INS [dm6]	T	TGCTTTT	2.162e^-4	0.591	INTERGENIC
3L	9689632	3L_9689632_INS [dm3] 3L_9696532_INS [dm6]	G	AA	2.163e^-4	0.591	DOWNSTREAM CR45121 INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	20528114	2L_20528114_MNP [dm3] 2L_20528114_MNP [dm6]	CCACA	TGTAG	2.164e^-4	0.591	INTERGENIC
2R	11724908	2R_11724908_SNP [dm3] 2R_15837403_SNP [dm6]	C	T	2.166e^-4	0.591	INTRON tun	regulatory region REDfly_CRMs
2R	15461091	2R_15461091_SNP [dm3] 2R_19573586_SNP [dm6]	G	T	2.170e^-4	0.591	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	546794	3L_546794_SNP [dm3] 3L_546794_SNP [dm6]	C	T	2.171e^-4	0.591	INTRON hipk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14972052	3R_14972052_SNP [dm3] 3R_19146330_SNP [dm6]	A	G	2.172e^-4	0.591	INTRON Ppcs
2L	6508820	2L_6508820_SNP [dm3] 2L_6508820_SNP [dm6]	A	G	2.178e^-4	0.591	UPSTREAM CR44775 INTRON CG31637	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	14980150	3R_14980150_SNP [dm3] 3R_19154428_SNP [dm6]	A	T	2.181e^-4	0.591	UTR_3_PRIME CG11779 UPSTREAM CG5835
3L	4619365	3L_4619365_SNP [dm3] 3L_4619365_SNP [dm6]	C	T	2.181e^-4	0.591	INTRON Src64B
2L	20942841	2L_20942841_SNP [dm3] 2L_20942841_SNP [dm6]	C	A	2.187e^-4	0.591	INTERGENIC
3L	4619278	3L_4619278_DEL [dm3] 3L_4619278_DEL [dm6]	GCTGGATTGCTTATAAAG...	G	2.188e^-4	0.591	INTRON Src64B
2L	8099956	2L_8099956_SNP [dm3] 2L_8099956_SNP [dm6]	T	A	2.192e^-4	0.591	INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8099959	2L_8099959_SNP [dm3] 2L_8099959_SNP [dm6]	C	G	2.192e^-4	0.591	INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24361728	3R_24361728_SNP [dm3] 3R_28536006_SNP [dm6]	T	C	2.195e^-4	0.591	INTRON Ppn
2L	16135128	2L_16135128_SNP [dm3] 2L_16135128_SNP [dm6]	T	A	2.197e^-4	0.591	DOWNSTREAM CR44871 & 1 other INTRON CG34168
X	3957198	X_3957198_SNP [dm3] X_4063165_SNP [dm6]	T	A	2.201e^-4	0.591	INTERGENIC
2L	19840286	2L_19840286_SNP [dm3] 2L_19840286_SNP [dm6]	C	A	2.203e^-4	0.591	INTRON sick
3L	16665687	3L_16665687_SNP [dm3] 3L_16672587_SNP [dm6]	T	C	2.205e^-4	0.591	INTRON zetaCOP
3L	12099829	3L_12099829_SNP [dm3] 3L_12106729_SNP [dm6]	A	G	2.225e^-4	0.595	INTERGENIC
2L	15303443	2L_15303443_SNP [dm3] 2L_15303443_SNP [dm6]	C	T	2.240e^-4	0.595	INTERGENIC
2L	14686016	2L_14686016_SNP [dm3] 2L_14686016_SNP [dm6]	A	G	2.240e^-4	0.595	INTRON osp
3R	12970762	3R_12970762_SNP [dm3] 3R_17145040_SNP [dm6]	A	T	2.240e^-4	0.595	UTR_3_PRIME m-cup DOWNSTREAM m-cup
3L	7831059	3L_7831059_SNP [dm3] 3L_7837959_SNP [dm6]	T	A	2.241e^-4	0.595	INTRON Pdp1	regulatory region REDfly_CRMs
2R	7961258	2R_7961258_SNP [dm3] 2R_12073753_SNP [dm6]	A	G	2.242e^-4	0.595	INTRON CG8888
X	19794533	X_19794533_SNP [dm3] X_19900500_SNP [dm6]	C	A	2.243e^-4	0.595	INTRON Hers
3R	26893060	3R_26893060_SNP [dm3] 3R_31067338_SNP [dm6]	G	A	2.254e^-4	0.595	INTRON Sox100B
2L	20527963	2L_20527963_SNP [dm3] 2L_20527963_SNP [dm6]	G	A	2.256e^-4	0.595	INTERGENIC
2L	6463898	2L_6463898_SNP [dm3] 2L_6463898_SNP [dm6]	A	T	2.258e^-4	0.595	UTR_5_PRIME CG16947	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	19794529	X_19794529_SNP [dm3] X_19900496_SNP [dm6]	T	C	2.258e^-4	0.595	INTRON Hers
2L	19880293	2L_19880293_SNP [dm3] 2L_19880293_SNP [dm6]	A	T	2.258e^-4	0.595	INTRON sick
3L	9813850	3L_9813850_SNP [dm3] 3L_9820750_SNP [dm6]	A	G	2.264e^-4	0.595	UPSTREAM CG43897 INTRON CG43897
2L	17857075	2L_17857075_SNP [dm3] 2L_17857075_SNP [dm6]	G	A	2.267e^-4	0.595	INTRON CadN2
2R	17590878	2R_17590878_SNP [dm3] 2R_21703373_SNP [dm6]	T	C	2.268e^-4	0.595	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3R	27112009	3R_27112009_SNP [dm3] 3R_31286287_SNP [dm6]	C	T	2.270e^-4	0.595	INTERGENIC
3R	5446560	3R_5446560_DEL [dm3] 3R_9620838_DEL [dm6]	AAAACAGTGG	A	2.273e^-4	0.595	INTRON CG8312
2R	5978477	2R_5978477_SNP [dm3] 2R_10090972_SNP [dm6]	A	G	2.276e^-4	0.595	INTRON CG2269
2L	8956027	2L_8956027_SNP [dm3] 2L_8956027_SNP [dm6]	A	G	2.280e^-4	0.595	UPSTREAM CG31886 INTRON CG31886	TF binding site mE1_TFBS_eve
3R	19279708	3R_19279708_SNP [dm3] 3R_23453986_SNP [dm6]	G	A	2.285e^-4	0.595	INTRON CG4374
3R	10201033	3R_10201033_SNP [dm3] 3R_14375311_SNP [dm6]	A	T	2.287e^-4	0.595	DOWNSTREAM CR44943 INTERGENIC
2R	12550294	2R_12550294_DEL [dm3] 2R_16662789_DEL [dm6]	TT	T	2.290e^-4	0.595	INTRON Picot
2L	7270455	2L_7270455_SNP [dm3] 2L_7270455_SNP [dm6]	T	C	2.301e^-4	0.596	INTRON Wnt4
2L	19469696	2L_19469696_SNP [dm3] 2L_19469696_SNP [dm6]	T	C	2.306e^-4	0.596	DOWNSTREAM CR45723 EXON CR45722
3L	12420788	3L_12420788_SNP [dm3] 3L_12427688_SNP [dm6]	C	T	2.307e^-4	0.596	SYNONYMOUS_CODING toe	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	7208454	2L_7208454_SNP [dm3] 2L_7208454_SNP [dm6]	G	T	2.312e^-4	0.596	SYNONYMOUS_CODING CG13784
3L	10321801	3L_10321801_DEL [dm3] 3L_10328701_DEL [dm6]	TTCACAT	T	2.318e^-4	0.596	INTERGENIC
2R	8372456	2R_8372456_SNP [dm3] 2R_12484951_SNP [dm6]	C	T	2.318e^-4	0.596	INTRON Dh44-R2
3L	4348324	3L_4348324_SNP [dm3] 3L_4348324_SNP [dm6]	T	C	2.321e^-4	0.596	DOWNSTREAM CR45156 INTRON Cip4
3L	14817946	3L_14817946_SNP [dm3] 3L_14824846_SNP [dm6]	A	G	2.322e^-4	0.596	INTRON CG17839
3L	4533938	3L_4533938_SNP [dm3] 3L_4533938_SNP [dm6]	A	C	2.332e^-4	0.596	INTRON CG11353
2R	13556739	2R_13556739_SNP [dm3] 2R_17669234_SNP [dm6]	T	C	2.344e^-4	0.596	UTR_3_PRIME eIF3-S8 UPSTREAM CG30108 & 1 other DOWNSTREAM eIF3-S8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
3L	22701905	3L_22701905_SNP [dm3] 3L_22708805_SNP [dm6]	C	A	2.345e^-4	0.596	INTERGENIC
3L	22103648	3L_22103648_SNP [dm3] 3L_22110548_SNP [dm6]	T	C	2.348e^-4	0.596	INTERGENIC
3L	1735500	3L_1735500_SNP [dm3] 3L_1735500_SNP [dm6]	A	G	2.354e^-4	0.596	SYNONYMOUS_CODING Oseg4 DOWNSTREAM CG18173	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	9686649	3L_9686649_SNP [dm3] 3L_9693549_SNP [dm6]	G	A	2.354e^-4	0.596	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	6454138	3R_6454138_SNP [dm3] 3R_10628416_SNP [dm6]	A	G	2.355e^-4	0.596	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
2R	10846191	2R_10846191_SNP [dm3] 2R_14958686_SNP [dm6]	A	C	2.363e^-4	0.596	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17760433	2R_17760433_SNP [dm3] 2R_21872928_SNP [dm6]	A	T	2.364e^-4	0.596	INTRON Fili	TF binding site mE1_TFBS_D
2L	4106251	2L_4106251_SNP [dm3] 2L_4106251_SNP [dm6]	T	A	2.369e^-4	0.596	INTRON ed
3L	15310397	3L_15310397_SNP [dm3] 3L_15317297_SNP [dm6]	T	C	2.374e^-4	0.596	INTERGENIC
3L	1718694	3L_1718694_SNP [dm3] 3L_1718694_SNP [dm6]	T	C	2.374e^-4	0.596	INTRON drpr	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	8377521	2L_8377521_SNP [dm3] 2L_8377521_SNP [dm6]	A	C	2.377e^-4	0.596	NON_SYNONYMOUS_CODING CG17294 SPLICE_SITE_REGION CG17294 UPSTREAM CG13390 DOWNSTREAM Aats-ala	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	6357688	X_6357688_SNP [dm3] X_6463655_SNP [dm6]	A	G	2.378e^-4	0.596	DOWNSTREAM CG42340 INTRON CG42340
3L	4348319	3L_4348319_SNP [dm3] 3L_4348319_SNP [dm6]	A	T	2.378e^-4	0.596	DOWNSTREAM CR45156 INTRON Cip4
3R	7077840	3R_7077840_DEL [dm3] 3R_11252118_DEL [dm6]	TA	T	2.379e^-4	0.596	DOWNSTREAM CR43283 INTRON CR43283 EXON CR43283	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	14456869	2R_14456869_SNP [dm3] 2R_18569364_SNP [dm6]	C	G	2.385e^-4	0.596	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15047261	3R_15047261_SNP [dm3] 3R_19221539_SNP [dm6]	G	A	2.390e^-4	0.596	INTRON vib	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26618595	3R_26618595_SNP [dm3] 3R_30792873_SNP [dm6]	T	G	2.391e^-4	0.596	SYNONYMOUS_CODING wts	TF binding site mE1_TFBS_chinmo
2L	19912411	2L_19912411_SNP [dm3] 2L_19912411_SNP [dm6]	C	A	2.396e^-4	0.596	UPSTREAM CR43097 & 1 other DOWNSTREAM Victoria INTRON sick
3L	3763790	3L_3763790_SNP [dm3] 3L_3763790_SNP [dm6]	A	T	2.399e^-4	0.596	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10434525	3R_10434525_SNP [dm3] 3R_14608803_SNP [dm6]	T	C	2.402e^-4	0.596	UPSTREAM CG14853 DOWNSTREAM stumps INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2347231	2L_2347231_SNP [dm3] 2L_2347231_SNP [dm6]	A	G	2.406e^-4	0.596	INTRON CG9967 & 1 other
3R	21989373	3R_21989373_SNP [dm3] 3R_26163651_SNP [dm6]	C	T	2.406e^-4	0.596	INTERGENIC
3L	5650459	3L_5650459_SNP [dm3] 3L_5657359_SNP [dm6]	C	G	2.410e^-4	0.596	UTR_3_PRIME lin-28 UPSTREAM sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	21382353	3R_21382353_SNP [dm3] 3R_25556631_SNP [dm6]	C	T	2.412e^-4	0.596	INTRON msi
2L	4492761	2L_4492761_SNP [dm3] 2L_4492761_SNP [dm6]	C	G	2.418e^-4	0.596	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_sens
3L	10626334	3L_10626334_SNP [dm3] 3L_10633234_SNP [dm6]	C	T	2.423e^-4	0.596	SYNONYMOUS_CODING hay INTRON CG34001
3L	14385314	3L_14385314_DEL [dm3] 3L_14392214_DEL [dm6]	ATAAAAA	A	2.427e^-4	0.596	INTERGENIC
3L	12025545	3L_12025545_SNP [dm3] 3L_12032445_SNP [dm6]	A	T	2.428e^-4	0.596	UPSTREAM CG43993 INTRON rols
3L	22042981	3L_22042981_SNP [dm3] 3L_22049881_SNP [dm6]	G	T	2.431e^-4	0.596	INTRON Oct-TyrR
3L	11789578	3L_11789578_SNP [dm3] 3L_11796478_SNP [dm6]	G	A	2.434e^-4	0.596	SYNONYMOUS_CODING Klp68D	TF binding site mE1_TFBS_sens
3R	4606495	3R_4606495_SNP [dm3] 3R_8780773_SNP [dm6]	T	C	2.434e^-4	0.596	UTR_5_PRIME CG33189 UPSTREAM CG33191 & 1 other DOWNSTREAM Pif1A INTRON Pif1B & 1 other	TF binding site mE1_TFBS_cad
3R	21989147	3R_21989147_SNP [dm3] 3R_26163425_SNP [dm6]	T	C	2.435e^-4	0.596	INTERGENIC
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	2.435e^-4	0.596	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
X	3933944	X_3933944_DEL [dm3] X_4039911_DEL [dm6]	TAATAAAATCCTTCTT...	T	2.436e^-4	0.596	INTERGENIC
2R	5980518	2R_5980518_SNP [dm3] 2R_10093013_SNP [dm6]	A	G	2.440e^-4	0.596	INTRON CG2269
2L	7201933	2L_7201933_SNP [dm3] 2L_7201933_SNP [dm6]	T	A	2.443e^-4	0.596	INTRON CG4502
X	12861168	X_12861168_SNP [dm3] X_12967135_SNP [dm6]	A	T	2.446e^-4	0.596	UPSTREAM Mur11Da INTERGENIC
3L	8459232	3L_8459232_SNP [dm3] 3L_8466132_SNP [dm6]	T	C	2.447e^-4	0.596	SYNONYMOUS_CODING Gug	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22163884	3R_22163884_SNP [dm3] 3R_26338162_SNP [dm6]	A	G	2.454e^-4	0.597	INTRON CG33970
X	3779608	X_3779608_SNP [dm3] X_3885575_SNP [dm6]	A	G	2.456e^-4	0.597	INTRON CG15239
X	12772830	X_12772830_DEL [dm3] X_12878797_DEL [dm6]	ACAGCA	A	2.470e^-4	0.597	INTRON Pde9
2R	19683084	2R_19683084_SNP [dm3] 2R_23795561_SNP [dm6]	T	C	2.472e^-4	0.597	INTRON CG9850
3R	10201041	3R_10201041_SNP [dm3] 3R_14375319_SNP [dm6]	T	A	2.477e^-4	0.597	DOWNSTREAM CR44943 INTERGENIC
3L	3763804	3L_3763804_SNP [dm3] 3L_3763804_SNP [dm6]	T	C	2.478e^-4	0.597	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9360926	2L_9360926_SNP [dm3] 2L_9360926_SNP [dm6]	G	A	2.480e^-4	0.597	INTERGENIC
2R	13173177	2R_13173177_SNP [dm3] 2R_17285672_SNP [dm6]	G	T	2.480e^-4	0.597	INTRON mbl
3L	16665602	3L_16665602_SNP [dm3] 3L_16672502_SNP [dm6]	A	G	2.488e^-4	0.597	SYNONYMOUS_CODING zetaCOP
3L	5694802	3L_5694802_SNP [dm3] 3L_5701702_SNP [dm6]	T	G	2.489e^-4	0.597	INTRON sif
3L	16012821	3L_16012821_SNP [dm3] 3L_16019721_SNP [dm6]	C	A	2.490e^-4	0.597	DOWNSTREAM CR43949 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	10805219	3R_10805219_SNP [dm3] 3R_14979497_SNP [dm6]	T	G	2.491e^-4	0.597	INTERGENIC
3L	4350281	3L_4350281_SNP [dm3] 3L_4350281_SNP [dm6]	G	T	2.492e^-4	0.597	INTRON Cip4
3R	10199545	3R_10199545_SNP [dm3] 3R_14373823_SNP [dm6]	G	C	2.494e^-4	0.597	UPSTREAM NK7.1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	22883797	3L_22883797_SNP [dm3] 3L_22890697_SNP [dm6]	A	G	2.500e^-4	0.598	INTRON slif	transposable element FlyBase
2L	16163524	2L_16163524_SNP [dm3] 2L_16163524_SNP [dm6]	C	A	2.504e^-4	0.598	INTERGENIC
X	9814806	X_9814806_DEL [dm3] X_9920773_DEL [dm6]	TT	T	2.505e^-4	0.598	INTERGENIC
2L	16135106	2L_16135106_DEL [dm3] 2L_16135106_DEL [dm6]	ATGAAA	A	2.509e^-4	0.598	DOWNSTREAM CR44871 & 1 other INTRON CG34168
3L	2645044	3L_2645044_SNP [dm3] 3L_2645044_SNP [dm6]	T	G	2.512e^-4	0.598	UPSTREAM CG1143 INTERGENIC
2L	8372232	2L_8372232_SNP [dm3] 2L_8372232_SNP [dm6]	G	T	2.522e^-4	0.599	UPSTREAM CG17292 INTRON CG17292
3L	5637762	3L_5637762_SNP [dm3] 3L_5644662_SNP [dm6]	C	A	2.523e^-4	0.599	INTRON Blimp-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18478605	3R_18478605_SNP [dm3] 3R_22652883_SNP [dm6]	T	A	2.527e^-4	0.599	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8127746	3L_8127746_SNP [dm3] 3L_8134646_SNP [dm6]	A	G	2.536e^-4	0.6	SYNONYMOUS_CODING CG7504
3R	25811120	3R_25811120_SNP [dm3] 3R_29985398_SNP [dm6]	C	T	2.544e^-4	0.6	INTRON CG7896	TF binding site mE1_TFBS_cad
3L	1718230	3L_1718230_SNP [dm3] 3L_1718230_SNP [dm6]	A	G	2.548e^-4	0.6	INTRON drpr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6944403	X_6944403_SNP [dm3] X_7050370_SNP [dm6]	C	T	2.550e^-4	0.6	DOWNSTREAM nullo INTRON CG12541	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	14824305	X_14824305_DEL [dm3] X_14930272_DEL [dm6]	CAC	C	2.555e^-4	0.6	UPSTREAM Flo2 INTRON Flo2	TF binding site BDTNP1_TFBS_prd
2R	17474253	2R_17474253_SNP [dm3] 2R_21586748_SNP [dm6]	G	T	2.555e^-4	0.6	INTERGENIC	TF binding site mE1_TFBS_cad
3L	13316134	3L_13316134_SNP [dm3] 3L_13323034_SNP [dm6]	C	A	2.557e^-4	0.6	INTERGENIC
3R	14181533	3R_14181533_SNP [dm3] 3R_18355811_SNP [dm6]	C	T	2.565e^-4	0.6	UTR_5_PRIME CG15803	TF binding site mE1_TFBS_chinmo
3R	15670051	3R_15670051_SNP [dm3] 3R_19844329_SNP [dm6]	A	G	2.568e^-4	0.6	INTERGENIC
3R	25529880	3R_25529880_SNP [dm3] 3R_29704158_SNP [dm6]	T	C	2.570e^-4	0.6	INTERGENIC
3R	21989095	3R_21989095_SNP [dm3] 3R_26163373_SNP [dm6]	A	G	2.574e^-4	0.6	INTERGENIC
3L	781229	3L_781229_SNP [dm3] 3L_781229_SNP [dm6]	G	T	2.575e^-4	0.6	INTERGENIC
2L	19786744	2L_19786744_SNP [dm3] 2L_19786744_SNP [dm6]	T	A	2.575e^-4	0.6	INTRON CdGAPr
3R	19279698	3R_19279698_SNP [dm3] 3R_23453976_SNP [dm6]	A	C	2.576e^-4	0.6	INTRON CG4374
3R	22135300	3R_22135300_SNP [dm3] 3R_26309578_SNP [dm6]	G	C	2.579e^-4	0.6	INTERGENIC
2L	20528108	2L_20528108_DEL [dm3] 2L_20528108_DEL [dm6]	GCCC	G	2.584e^-4	0.6	INTERGENIC
2R	8637462	2R_8637462_SNP [dm3] 2R_12749957_SNP [dm6]	A	G	2.585e^-4	0.6	SYNONYMOUS_CODING CG42663	TF binding site mE1_TFBS_cad
2L	583317	2L_583317_SNP [dm3] 2L_583317_SNP [dm6]	C	A	2.623e^-4	0.602	DOWNSTREAM Gsc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	10805220	3R_10805220_SNP [dm3] 3R_14979498_SNP [dm6]	T	G	2.626e^-4	0.602	INTERGENIC
2L	19802463	2L_19802463_SNP [dm3] 2L_19802463_SNP [dm6]	A	C	2.627e^-4	0.602	INTRON sick
3L	457088	3L_457088_SNP [dm3] 3L_457088_SNP [dm6]	G	A	2.628e^-4	0.602	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6001663	3L_6001663_SNP [dm3] 3L_6008563_SNP [dm6]	C	A	2.631e^-4	0.602	DOWNSTREAM alphaKap4 INTRON PVRAP
3L	7479852	3L_7479852_SNP [dm3] 3L_7486752_SNP [dm6]	T	G	2.633e^-4	0.602	INTRON mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14817336	3L_14817336_SNP [dm3] 3L_14824236_SNP [dm6]	G	A	2.636e^-4	0.602	INTRON CG17839
3L	17089906	3L_17089906_SNP [dm3] 3L_17096806_SNP [dm6]	C	T	2.637e^-4	0.602	INTRON Rbp6
3R	26320304	3R_26320304_SNP [dm3] 3R_30494582_SNP [dm6]	A	T	2.640e^-4	0.602	INTRON PH4alphaMP
3L	9732320	3L_9732320_SNP [dm3] 3L_9739220_SNP [dm6]	C	T	2.644e^-4	0.602	SYNONYMOUS_CODING CG42268 UTR_5_PRIME CG42268	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17883931	2L_17883931_SNP [dm3] 2L_17883931_SNP [dm6]	C	G	2.644e^-4	0.602	INTERGENIC
3L	411206	3L_411206_INS [dm3] 3L_411206_INS [dm6]	C	CA	2.646e^-4	0.602	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10265312	3L_10265312_SNP [dm3] 3L_10272212_SNP [dm6]	G	A	2.649e^-4	0.602	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	9007178	X_9007178_SNP [dm3] X_9113145_SNP [dm6]	T	A	2.650e^-4	0.602	INTRON AP-1gamma
2L	9104792	2L_9104792_SNP [dm3] 2L_9104792_SNP [dm6]	A	G	2.650e^-4	0.602	INTERGENIC
3L	7480667	3L_7480667_SNP [dm3] 3L_7487567_SNP [dm6]	A	G	2.652e^-4	0.602	SYNONYMOUS_CODING mthl6
2R	18278806	2R_18278806_SNP [dm3] 2R_22391301_SNP [dm6]	A	G	2.653e^-4	0.602	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17861799	2L_17861799_SNP [dm3] 2L_17861799_SNP [dm6]	A	C	2.654e^-4	0.602	INTRON CadN2
3R	15810871	3R_15810871_INS [dm3] 3R_19985149_INS [dm6]	A	AA	2.665e^-4	0.604	INTRON Hs6st
3L	555575	3L_555575_SNP [dm3] 3L_555575_SNP [dm6]	C	A	2.666e^-4	0.604	INTRON hipk
3R	21531542	3R_21531542_SNP [dm3] 3R_25705820_SNP [dm6]	A	T	2.671e^-4	0.604	INTRON LpR2
3R	13922099	3R_13922099_SNP [dm3] 3R_18096377_SNP [dm6]	G	C	2.677e^-4	0.604	SYNONYMOUS_CODING sr
X	15467545	X_15467545_SNP [dm3] X_15573512_SNP [dm6]	A	C	2.683e^-4	0.604	NON_SYNONYMOUS_CODING CG9213	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16219175	2L_16219175_SNP [dm3] 2L_16219175_SNP [dm6]	C	G	2.690e^-4	0.604	INTERGENIC
2R	17285289	2R_17285289_SNP [dm3] 2R_21397784_SNP [dm6]	T	G	2.696e^-4	0.604	INTRON Sdc
2L	20688391	2L_20688391_SNP [dm3] 2L_20688391_SNP [dm6]	T	C	2.697e^-4	0.604	INTRON Hr38	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10627130	3L_10627130_SNP [dm3] 3L_10634030_SNP [dm6]	G	A	2.700e^-4	0.604	DOWNSTREAM E_z_ & 1 other INTRON CG34001
2L	19803109	2L_19803109_SNP [dm3] 2L_19803109_SNP [dm6]	A	G	2.703e^-4	0.604	INTRON sick
2L	9988714	2L_9988714_INS [dm3] 2L_9988714_INS [dm6]	C	CTC	2.706e^-4	0.604	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	10008414	2R_10008414_SNP [dm3] 2R_14120909_SNP [dm6]	G	A	2.707e^-4	0.604	INTRON Prosap	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	17796349	2R_17796349_SNP [dm3] 2R_21908844_SNP [dm6]	G	A	2.711e^-4	0.604	INTRON Fili
2R	16740842	2R_16740842_SNP [dm3] 2R_20853337_SNP [dm6]	A	G	2.712e^-4	0.604	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16135146	2L_16135146_SNP [dm3] 2L_16135146_SNP [dm6]	T	A	2.714e^-4	0.604	DOWNSTREAM CR44871 & 1 other INTRON CG34168
X	14062862	X_14062862_SNP [dm3] X_14168829_SNP [dm6]	C	G	2.715e^-4	0.604	UPSTREAM CG12480 INTERGENIC
3L	2644985	3L_2644985_SNP [dm3] 3L_2644985_SNP [dm6]	T	A	2.718e^-4	0.604	UPSTREAM CG1143 INTERGENIC
2L	1479197	2L_1479197_SNP [dm3] 2L_1479197_SNP [dm6]	C	T	2.730e^-4	0.606	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4290259	3L_4290259_SNP [dm3] 3L_4290259_SNP [dm6]	C	T	2.734e^-4	0.606	SYNONYMOUS_CODING Hexo1 DOWNSTREAM CG15012	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	19120194	3L_19120194_SNP [dm3] 3L_19127094_SNP [dm6]	A	G	2.736e^-4	0.606	INTRON CG14082
2L	8664733	2L_8664733_SNP [dm3] 2L_8664733_SNP [dm6]	C	A	2.736e^-4	0.606	INTRON Sema-1a
2R	14331781	2R_14331781_SNP [dm3] 2R_18444276_SNP [dm6]	G	T	2.742e^-4	0.606	INTRON slim
2L	20687872	2L_20687872_SNP [dm3] 2L_20687872_SNP [dm6]	T	C	2.749e^-4	0.607	SYNONYMOUS_CODING Hr38	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4111689	3L_4111689_SNP [dm3] 3L_4111689_SNP [dm6]	T	C	2.758e^-4	0.607	INTRON Ack	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4523480	3L_4523480_SNP [dm3] 3L_4523480_SNP [dm6]	G	T	2.768e^-4	0.607	INTRON Tie
2L	16135119	2L_16135119_SNP [dm3] 2L_16135119_SNP [dm6]	A	G	2.770e^-4	0.607	DOWNSTREAM CR44871 & 1 other INTRON CG34168
3R	24336615	3R_24336615_SNP [dm3] 3R_28510893_SNP [dm6]	C	T	2.770e^-4	0.607	SYNONYMOUS_CODING Dhc98D
2L	9111591	2L_9111591_SNP [dm3] 2L_9111591_SNP [dm6]	C	A	2.775e^-4	0.607	UPSTREAM Or30a INTERGENIC
3L	4619437	3L_4619437_SNP [dm3] 3L_4619437_SNP [dm6]	A	T	2.780e^-4	0.607	INTRON Src64B
3L	2647596	3L_2647596_SNP [dm3] 3L_2647596_SNP [dm6]	C	A	2.781e^-4	0.607	UPSTREAM CG1246 DOWNSTREAM CG1143 INTERGENIC
3L	10627144	3L_10627144_SNP [dm3] 3L_10634044_SNP [dm6]	G	T	2.781e^-4	0.607	DOWNSTREAM E_z_ & 1 other INTRON CG34001
3L	6845475	3L_6845475_SNP [dm3] 3L_6852375_SNP [dm6]	G	T	2.782e^-4	0.607	INTERGENIC
3L	1564487	3L_1564487_SNP [dm3] 3L_1564487_SNP [dm6]	C	A	2.785e^-4	0.607	UPSTREAM CG12003 INTRON CG7879
2L	9963827	2L_9963827_SNP [dm3] 2L_9963827_SNP [dm6]	T	G	2.790e^-4	0.607	UTR_5_PRIME CG5850 UPSTREAM CG5850 DOWNSTREAM Dref	TF binding site mE1_TFBS_HSA
3L	781306	3L_781306_SNP [dm3] 3L_781306_SNP [dm6]	T	G	2.792e^-4	0.607	INTERGENIC
2R	3264812	2R_3264812_SNP [dm3] 2R_7377307_SNP [dm6]	C	T	2.794e^-4	0.607	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14936708	3R_14936708_SNP [dm3] 3R_19110986_SNP [dm6]	T	A	2.804e^-4	0.607	INTRON CG6040
3L	8878432	3L_8878432_SNP [dm3] 3L_8885332_SNP [dm6]	G	A	2.808e^-4	0.607	INTRON dally
3L	1174371	3L_1174371_SNP [dm3] 3L_1174371_SNP [dm6]	G	T	2.811e^-4	0.607	NON_SYNONYMOUS_CODING bab2	TF binding site mE1_TFBS_cad
2L	8099958	2L_8099958_SNP [dm3] 2L_8099958_SNP [dm6]	A	T	2.811e^-4	0.607	INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3763951	3L_3763951_SNP [dm3] 3L_3763951_SNP [dm6]	A	G	2.814e^-4	0.607	INTRON CG32264	TF binding site BDTNP1_TFBS_dl
3L	16202299	3L_16202299_SNP [dm3] 3L_16209199_SNP [dm6]	C	T	2.823e^-4	0.607	INTERGENIC	TF binding site mE1_TFBS_cad
2L	7883118	2L_7883118_SNP [dm3] 2L_7883118_SNP [dm6]	G	A	2.828e^-4	0.607	DOWNSTREAM CG7102 INTERGENIC
2L	19840658	2L_19840658_SNP [dm3] 2L_19840658_SNP [dm6]	A	T	2.836e^-4	0.607	INTRON sick
3L	4348295	3L_4348295_SNP [dm3] 3L_4348295_SNP [dm6]	T	G	2.836e^-4	0.607	DOWNSTREAM CR45156 INTRON Cip4
3L	22105899	3L_22105899_SNP [dm3] 3L_22112799_SNP [dm6]	C	T	2.840e^-4	0.607	INTERGENIC
3R	25978142	3R_25978142_SNP [dm3] 3R_30152420_SNP [dm6]	T	C	2.846e^-4	0.607	DOWNSTREAM CG11498 INTRON CG15529	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	7993142	X_7993142_SNP [dm3] X_8099109_SNP [dm6]	T	A	2.847e^-4	0.607	INTRON CG2258	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	586272	2L_586272_DEL [dm3] 2L_586272_DEL [dm6]	GCAACAG	G	2.850e^-4	0.607	INTRON Gsc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	8133682	2R_8133682_SNP [dm3] 2R_12246177_SNP [dm6]	T	A	2.853e^-4	0.607	DOWNSTREAM CR44315 INTERGENIC
3R	15045602	3R_15045602_SNP [dm3] 3R_19219880_SNP [dm6]	T	C	2.854e^-4	0.607	INTRON vib
3L	10410424	3L_10410424_SNP [dm3] 3L_10417324_SNP [dm6]	A	C	2.856e^-4	0.607	INTERGENIC
3R	24413164	3R_24413164_SNP [dm3] 3R_28587442_SNP [dm6]	C	T	2.862e^-4	0.607	EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	15559759	X_15559759_SNP [dm3] X_15665726_SNP [dm6]	A	G	2.868e^-4	0.607	UPSTREAM CR43299 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	12097021	3L_12097021_SNP [dm3] 3L_12103921_SNP [dm6]	C	T	2.869e^-4	0.607	INTERGENIC
2L	16135118	2L_16135118_SNP [dm3] 2L_16135118_SNP [dm6]	G	A	2.870e^-4	0.607	DOWNSTREAM CR44871 & 1 other INTRON CG34168
2L	18885261	2L_18885261_SNP [dm3] 2L_18885261_SNP [dm6]	C	G	2.872e^-4	0.607	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	1796051	3L_1796051_SNP [dm3] 3L_1796051_SNP [dm6]	C	T	2.875e^-4	0.607	UPSTREAM alpha-Spec & 1 other INTRON Cdc37	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_sens
3L	713137	3L_713137_SNP [dm3] 3L_713137_SNP [dm6]	A	G	2.878e^-4	0.607	INTERGENIC	TF binding site mE1_TFBS_sens
3R	10427673	3R_10427673_SNP [dm3] 3R_14601951_SNP [dm6]	T	G	2.881e^-4	0.607	UPSTREAM stumps INTRON stumps
3R	16987203	3R_16987203_SNP [dm3] 3R_21161481_SNP [dm6]	G	C	2.885e^-4	0.607	UPSTREAM CG10824 INTRON SNF4Agamma
2R	3559077	2R_3559077_SNP [dm3] 2R_7671572_SNP [dm6]	A	G	2.888e^-4	0.607	UPSTREAM CG12826 INTERGENIC
3R	9576098	3R_9576098_SNP [dm3] 3R_13750376_SNP [dm6]	G	A	2.890e^-4	0.607	SYNONYMOUS_CODING CG34383	TF binding site mE1_TFBS_cad
X	2703387	X_2703387_SNP [dm3] X_2809354_SNP [dm6]	C	A	2.891e^-4	0.607	UPSTREAM CG12498 INTRON kirre
2L	16170031	2L_16170031_SNP [dm3] 2L_16170031_SNP [dm6]	C	T	2.895e^-4	0.607	INTRON Ca-alpha1D
2L	8091712	2L_8091712_SNP [dm3] 2L_8091712_SNP [dm6]	A	G	2.896e^-4	0.607	INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14897926	3R_14897926_DEL [dm3] 3R_19072204_DEL [dm6]	TCCGGACACT	T	2.898e^-4	0.607	INTRON cdi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3743892	2L_3743892_SNP [dm3] 2L_3743892_SNP [dm6]	T	G	2.901e^-4	0.607	INTRON CG10019
2R	6796436	2R_6796436_SNP [dm3] 2R_10908931_SNP [dm6]	C	T	2.902e^-4	0.607	UPSTREAM Obp47a INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8954661	2L_8954661_SNP [dm3] 2L_8954661_SNP [dm6]	G	A	2.903e^-4	0.607	SYNONYMOUS_CODING CG31886	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	14950843	3R_14950843_SNP [dm3] 3R_19125121_SNP [dm6]	A	G	2.908e^-4	0.607	SYNONYMOUS_CODING CG6040	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25617765	3R_25617765_SNP [dm3] 3R_29792043_SNP [dm6]	A	G	2.908e^-4	0.607	SYNONYMOUS_CODING kay	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	21331287	3R_21331287_SNP [dm3] 3R_25505565_SNP [dm6]	A	G	2.912e^-4	0.607	NON_SYNONYMOUS_CODING CG5107 UPSTREAM CG5111
X	9601268	X_9601268_SNP [dm3] X_9707235_SNP [dm6]	T	A	2.928e^-4	0.608	INTERGENIC	TF binding site mE1_TFBS_cnc
X	21160839	X_21160839_SNP [dm3] X_21289812_SNP [dm6]	T	C	2.928e^-4	0.608	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4348316	3L_4348316_SNP [dm3] 3L_4348316_SNP [dm6]	C	A	2.929e^-4	0.608	DOWNSTREAM CR45156 INTRON Cip4
2R	19503623	2R_19503623_DEL [dm3] 2R_23616100_DEL [dm6]	GACACAGTG	G	2.933e^-4	0.608	INTRON CG17664
3R	4602048	3R_4602048_SNP [dm3] 3R_8776326_SNP [dm6]	A	G	2.933e^-4	0.608	SYNONYMOUS_CODING Pif1B UTR_3_PRIME Pif1A	TF binding site mE1_TFBS_HSA
3L	2645026	3L_2645026_SNP [dm3] 3L_2645026_SNP [dm6]	T	A	2.942e^-4	0.608	UPSTREAM CG1143 INTERGENIC
2R	19504762	2R_19504762_SNP [dm3] 2R_23617239_SNP [dm6]	G	A	2.950e^-4	0.608	UPSTREAM CG17664 INTERGENIC	TF binding site mE1_TFBS_sens
3R	25768240	3R_25768240_SNP [dm3] 3R_29942518_SNP [dm6]	G	T	2.959e^-4	0.608	INTRON CG15523
2R	3665693	2R_3665693_SNP [dm3] 2R_7778188_SNP [dm6]	A	T	2.962e^-4	0.608	INTRON CG30497 & 1 other
3L	2171809	3L_2171809_SNP [dm3] 3L_2171809_SNP [dm6]	T	A	2.965e^-4	0.608	UPSTREAM CG5704 EXON CR15821
X	19421607	X_19421607_DEL [dm3] X_19527574_DEL [dm6]	CAC	C	2.965e^-4	0.608	UPSTREAM CoRest INTRON CoRest	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	19794504	2L_19794504_SNP [dm3] 2L_19794504_SNP [dm6]	C	T	2.968e^-4	0.608	UTR_3_PRIME fs_2_ltoPP43 INTRON fs_2_ltoPP43
3L	6999831	3L_6999831_SNP [dm3] 3L_7006731_SNP [dm6]	G	A	2.969e^-4	0.608	INTRON Mp
2R	11582501	2R_11582501_SNP [dm3] 2R_15694996_SNP [dm6]	G	C	2.970e^-4	0.608	SYNONYMOUS_CODING CG33460 UPSTREAM CG33461
2L	13704857	2L_13704857_SNP [dm3] 2L_13704857_SNP [dm6]	A	G	2.973e^-4	0.608	INTRON CG31814	TF binding site BDTNP1_TFBS_twi
3L	17103452	3L_17103452_SNP [dm3] 3L_17110352_SNP [dm6]	T	C	2.973e^-4	0.608	INTRON Rbp6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8590460	2L_8590460_SNP [dm3] 2L_8590460_SNP [dm6]	T	A	2.979e^-4	0.608	INTRON Sema-1a EXON CR43855
3L	2645491	3L_2645491_SNP [dm3] 3L_2645491_SNP [dm6]	A	T	2.980e^-4	0.608	INTRON CG1143
3L	4619367	3L_4619367_SNP [dm3] 3L_4619367_SNP [dm6]	G	A	2.991e^-4	0.608	INTRON Src64B
2L	19804850	2L_19804850_DEL [dm3] 2L_19804850_DEL [dm6]	ATAT	A	2.995e^-4	0.608	INTRON sick	TF binding site mE1_TFBS_cad
2L	7206684	2L_7206684_SNP [dm3] 2L_7206684_SNP [dm6]	G	A	3.005e^-4	0.608	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784	TF binding site mE1_TFBS_sens
2L	14956379	2L_14956379_SNP [dm3] 2L_14956379_SNP [dm6]	G	T	3.005e^-4	0.608	INTRON CG42313
2R	16864990	2R_16864990_SNP [dm3] 2R_20977485_SNP [dm6]	G	T	3.008e^-4	0.608	UTR_3_PRIME CG9344 DOWNSTREAM CG15650 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	13676120	X_13676120_SNP [dm3] X_13782087_SNP [dm6]	A	T	3.013e^-4	0.608	UTR_5_PRIME CtsB1 UPSTREAM CG11103	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	2350315	2L_2350315_SNP [dm3] 2L_2350315_SNP [dm6]	T	C	3.021e^-4	0.608	INTRON CG9967 & 1 other
2L	3131466	2L_3131466_SNP [dm3] 2L_3131466_SNP [dm6]	T	C	3.023e^-4	0.608	INTRON toc
3L	1579387	3L_1579387_SNP [dm3] 3L_1579387_SNP [dm6]	A	C	3.027e^-4	0.608	INTRON CG13917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	1579389	3L_1579389_SNP [dm3] 3L_1579389_SNP [dm6]	C	A	3.027e^-4	0.608	INTRON CG13917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	1718447	3L_1718447_SNP [dm3] 3L_1718447_SNP [dm6]	T	C	3.032e^-4	0.608	INTRON drpr	TF binding site BDTNP1_TFBS_sna
3L	12148053	3L_12148053_SNP [dm3] 3L_12154953_SNP [dm6]	A	G	3.041e^-4	0.608	SYNONYMOUS_CODING Nrx-IV	TF binding site mE1_TFBS_sens
3L	4111667	3L_4111667_SNP [dm3] 3L_4111667_SNP [dm6]	T	C	3.044e^-4	0.608	INTRON Ack	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12280825	2R_12280825_SNP [dm3] 2R_16393320_SNP [dm6]	G	T	3.046e^-4	0.608	INTRON Sema-2b
2L	3773359	2L_3773359_SNP [dm3] 2L_3773359_SNP [dm6]	A	T	3.054e^-4	0.608	INTRON bowl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	6786723	2R_6786723_INS [dm3] 2R_10899218_INS [dm6]	G	GAAGCACCTTGTAAA...	3.058e^-4	0.608	UPSTREAM Rpb5 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu
2L	20528008	2L_20528008_SNP [dm3] 2L_20528008_SNP [dm6]	C	G	3.060e^-4	0.608	INTERGENIC
2L	2837091	2L_2837091_SNP [dm3] 2L_2837091_SNP [dm6]	C	T	3.065e^-4	0.608	INTRON CG3119	TF binding site mE1_TFBS_cad
3R	22858373	3R_22858373_SNP [dm3] 3R_27032651_SNP [dm6]	T	G	3.069e^-4	0.608	INTRON RYa-R	TF binding site mE1_TFBS_HSA
X	12715494	X_12715494_SNP [dm3] X_12821461_SNP [dm6]	T	A	3.071e^-4	0.608	INTRON Pde9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14187720	3R_14187720_SNP [dm3] 3R_18361998_SNP [dm6]	C	A	3.073e^-4	0.608	UTR_5_PRIME CG7669 DOWNSTREAM CR45634
2R	5529696	2R_5529696_SNP [dm3] 2R_9642191_SNP [dm6]	G	A	3.075e^-4	0.608	INTRON Mmp2
3R	15213950	3R_15213950_SNP [dm3] 3R_19388228_SNP [dm6]	G	A	3.077e^-4	0.608	DOWNSTREAM CR34285 INTRON Ino80 & 1 other	TF binding site mE1_TFBS_sens
X	21290634	X_21290634_SNP [dm3] X_21419607_SNP [dm6]	G	A	3.083e^-4	0.608	INTERGENIC
3R	10914332	3R_10914332_SNP [dm3] 3R_15088610_SNP [dm6]	A	G	3.084e^-4	0.608	INTRON CG6966
3R	10282004	3R_10282004_SNP [dm3] 3R_14456282_SNP [dm6]	G	A	3.087e^-4	0.608	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11330070	2R_11330070_SNP [dm3] 2R_15442565_SNP [dm6]	G	A	3.089e^-4	0.608	INTRON CG43729
3L	44258	3L_44258_SNP [dm3] 3L_44258_SNP [dm6]	A	G	3.095e^-4	0.608	INTERGENIC
X	1192886	X_1192886_SNP [dm3] X_1298853_SNP [dm6]	A	G	3.104e^-4	0.608	UPSTREAM CG32811 INTRON DAAM	TF binding site mE1_TFBS_chinmo
3L	16432980	3L_16432980_SNP [dm3] 3L_16439880_SNP [dm6]	A	T	3.110e^-4	0.608	INTRON CG33158 & 1 other
3L	10626331	3L_10626331_SNP [dm3] 3L_10633231_SNP [dm6]	G	T	3.112e^-4	0.608	SYNONYMOUS_CODING hay INTRON CG34001
3L	4619404	3L_4619404_SNP [dm3] 3L_4619404_SNP [dm6]	A	G	3.112e^-4	0.608	INTRON Src64B
3L	9515098	3L_9515098_SNP [dm3] 3L_9521998_SNP [dm6]	A	G	3.118e^-4	0.608	INTRON CG33700
2R	18838480	2R_18838480_SNP [dm3] 2R_22950957_SNP [dm6]	A	G	3.122e^-4	0.608	DOWNSTREAM CR32835 INTERGENIC
3L	109064	3L_109064_SNP [dm3] 3L_109064_SNP [dm6]	A	G	3.126e^-4	0.608	INTERGENIC
3R	21344585	3R_21344585_SNP [dm3] 3R_25518863_SNP [dm6]	G	T	3.130e^-4	0.608	INTRON msi	TF binding site mE1_TFBS_Trl
3R	14771266	3R_14771266_SNP [dm3] 3R_18945544_SNP [dm6]	G	T	3.134e^-4	0.608	INTRON CG42613
X	14844331	X_14844331_SNP [dm3] X_14950298_SNP [dm6]	A	C	3.137e^-4	0.608	INTRON pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21861589	3R_21861589_SNP [dm3] 3R_26035867_SNP [dm6]	C	T	3.139e^-4	0.608	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	11322549	3R_11322549_SNP [dm3] 3R_15496827_SNP [dm6]	T	C	3.140e^-4	0.608	INTERGENIC
3R	6660063	3R_6660063_SNP [dm3] 3R_10834341_SNP [dm6]	T	G	3.141e^-4	0.608	INTRON Cad86C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	388595	2L_388595_SNP [dm3] 2L_388595_SNP [dm6]	G	T	3.141e^-4	0.608	INTERGENIC
3L	4556778	3L_4556778_SNP [dm3] 3L_4556778_SNP [dm6]	A	C	3.143e^-4	0.608	UPSTREAM CG42540 INTRON CG42540
2L	1935721	2L_1935721_SNP [dm3] 2L_1935721_SNP [dm6]	C	A	3.143e^-4	0.608	INTRON CG7337	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17030654	2R_17030654_SNP [dm3] 2R_21143149_SNP [dm6]	A	C	3.146e^-4	0.608	SYNONYMOUS_CODING CG9406 UPSTREAM Magi & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	3275480	3R_3275480_SNP [dm3] 3R_7449758_SNP [dm6]	G	A	3.150e^-4	0.608	INTERGENIC
2L	5967172	2L_5967172_SNP [dm3] 2L_5967172_SNP [dm6]	G	A	3.151e^-4	0.608	SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	22083995	3L_22083995_DEL [dm3] 3L_22090895_DEL [dm6]	AA	A	3.155e^-4	0.608	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	21989124	3R_21989124_SNP [dm3] 3R_26163402_SNP [dm6]	T	C	3.159e^-4	0.608	INTERGENIC
3L	16202260	3L_16202260_SNP [dm3] 3L_16209160_SNP [dm6]	A	C	3.160e^-4	0.608	INTERGENIC	TF binding site mE1_TFBS_cad
3L	13160814	3L_13160814_SNP [dm3] 3L_13167714_SNP [dm6]	T	A	3.164e^-4	0.608	INTERGENIC
2R	14992287	2R_14992287_SNP [dm3] 2R_19104782_SNP [dm6]	G	A	3.166e^-4	0.608	INTRON 5-HT1A
3R	4354693	3R_4354693_SNP [dm3] 3R_8528971_SNP [dm6]	C	T	3.178e^-4	0.608	UPSTREAM CG11741 INTERGENIC	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	16033713	2L_16033713_INS [dm3] 2L_16033713_INS [dm6]	T	TT	3.182e^-4	0.608	INTRON beat-Ic
3L	4618770	3L_4618770_SNP [dm3] 3L_4618770_SNP [dm6]	A	G	3.190e^-4	0.608	INTRON Src64B
3L	18198369	3L_18198369_SNP [dm3] 3L_18205269_SNP [dm6]	C	G	3.192e^-4	0.608	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2655339	3L_2655339_SNP [dm3] 3L_2655339_SNP [dm6]	C	T	3.193e^-4	0.608	UTR_3_PRIME Snup & 1 other DOWNSTREAM Fife
3L	6902842	3L_6902842_SNP [dm3] 3L_6909742_SNP [dm6]	C	T	3.196e^-4	0.608	INTERGENIC
3R	15212654	3R_15212654_SNP [dm3] 3R_19386932_SNP [dm6]	G	T	3.202e^-4	0.608	UPSTREAM CG3734 INTRON Ino80 EXON CR34285
3L	13316141	3L_13316141_SNP [dm3] 3L_13323041_SNP [dm6]	T	C	3.213e^-4	0.608	INTERGENIC
2L	9631216	2L_9631216_SNP [dm3] 2L_9631216_SNP [dm6]	C	T	3.217e^-4	0.608	INTERGENIC
3R	24872385	3R_24872385_SNP [dm3] 3R_29046663_SNP [dm6]	G	A	3.218e^-4	0.608	UTR_3_PRIME Pkc98E
2L	21310434	2L_21310434_SNP [dm3] 2L_21310434_SNP [dm6]	C	A	3.218e^-4	0.608	UPSTREAM Mio & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7077576	2L_7077576_SNP [dm3] 2L_7077576_SNP [dm6]	T	C	3.218e^-4	0.608	INTRON Pvf2
2L	17720234	2L_17720234_INS [dm3] 2L_17720234_INS [dm6]	T	TATATGTGTGT...	3.220e^-4	0.608	INTRON CadN	TF binding site mE1_TFBS_inv
3R	18561103	3R_18561103_SNP [dm3] 3R_22735381_SNP [dm6]	A	G	3.226e^-4	0.608	SYNONYMOUS_CODING Dcr-1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16421431	2R_16421431_SNP [dm3] 2R_20533926_SNP [dm6]	G	C	3.228e^-4	0.608	UTR_3_PRIME CG30154 UPSTREAM CG18067 DOWNSTREAM CR44651
3R	2256329	3R_2256329_SNP [dm3] 3R_6430607_SNP [dm6]	C	T	3.235e^-4	0.608	INTRON gpp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	1822139	2R_1822139_SNP [dm3] 2R_5934634_SNP [dm6]	A	G	3.237e^-4	0.608	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	19795441	2L_19795441_SNP [dm3] 2L_19795441_SNP [dm6]	A	T	3.238e^-4	0.608	UPSTREAM sick INTRON fs_2_ltoPP43	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	20679773	3L_20679773_SNP [dm3] 3L_20686673_SNP [dm6]	A	T	3.239e^-4	0.608	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	19743827	2L_19743827_SNP [dm3] 2L_19743827_SNP [dm6]	G	A	3.241e^-4	0.608	SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12615786	3L_12615786_SNP [dm3] 3L_12622686_SNP [dm6]	G	A	3.241e^-4	0.608	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	1731975	3L_1731975_SNP [dm3] 3L_1731975_SNP [dm6]	C	T	3.245e^-4	0.608	SYNONYMOUS_CODING Oseg4 UPSTREAM drpr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	4094020	X_4094020_SNP [dm3] X_4199987_SNP [dm6]	T	C	3.246e^-4	0.608	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	709537	3L_709537_SNP [dm3] 3L_709537_SNP [dm6]	A	T	3.252e^-4	0.608	INTRON CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
2L	19798997	2L_19798997_SNP [dm3] 2L_19798997_SNP [dm6]	T	A	3.254e^-4	0.608	INTRON sick
2R	11322522	2R_11322522_SNP [dm3] 2R_15435017_SNP [dm6]	C	A	3.254e^-4	0.608	INTRON CG43729	TF binding site mE1_TFBS_chinmo
2R	4190397	2R_4190397_SNP [dm3] 2R_8302892_SNP [dm6]	T	C	3.257e^-4	0.608	INTERGENIC
3L	3913452	3L_3913452_SNP [dm3] 3L_3913452_SNP [dm6]	A	G	3.257e^-4	0.608	INTRON Eip63F-1
3L	1103352	3L_1103352_INS [dm3] 3L_1103352_INS [dm6]	T	TGTAT	3.262e^-4	0.608	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	14844294	X_14844294_SNP [dm3] X_14950261_SNP [dm6]	A	C	3.264e^-4	0.608	INTRON pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	10969436	3L_10969436_SNP [dm3] 3L_10976336_SNP [dm6]	A	T	3.265e^-4	0.608	INTERGENIC	TF binding site mE1_TFBS_cad

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.219e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	4.8644	0.0878

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2841 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	16202334	3L_16202334_SNP [dm3] 3L_16209234_SNP [dm6]	A	T	1.064e^-8	0.013	INTERGENIC	TF binding site mE1_TFBS_cad
3L	16202321	3L_16202321_SNP [dm3] 3L_16209221_SNP [dm6]	G	T	1.352e^-8	0.013	INTERGENIC	TF binding site mE1_TFBS_cad
3L	712399	3L_712399_SNP [dm3] 3L_712399_SNP [dm6]	A	T	4.537e^-8	0.022	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	16202369	3L_16202369_SNP [dm3] 3L_16209269_SNP [dm6]	G	A	5.191e^-8	0.022	INTERGENIC	TF binding site mE1_TFBS_cad
3L	711790	3L_711790_SNP [dm3] 3L_711790_SNP [dm6]	A	T	5.876e^-8	0.022	UTR_5_PRIME CG13896	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	711857	3L_711857_SNP [dm3] 3L_711857_SNP [dm6]	A	C	1.408e^-7	0.031	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	712385	3L_712385_DEL [dm3] 3L_712385_DEL [dm6]	TA	T	1.471e^-7	0.031	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712376	3L_712376_SNP [dm3] 3L_712376_SNP [dm6]	G	A	1.573e^-7	0.031	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712348	3L_712348_SNP [dm3] 3L_712348_SNP [dm6]	G	T	1.666e^-7	0.031	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712235	3L_712235_SNP [dm3] 3L_712235_SNP [dm6]	C	T	1.798e^-7	0.031	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	712337	3L_712337_SNP [dm3] 3L_712337_SNP [dm6]	G	T	1.799e^-7	0.031	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712388	3L_712388_DEL [dm3] 3L_712388_DEL [dm6]	AAT	A	2.064e^-7	0.032	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712377	3L_712377_SNP [dm3] 3L_712377_SNP [dm6]	A	C	2.248e^-7	0.032	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712226	3L_712226_SNP [dm3] 3L_712226_SNP [dm6]	C	A	2.904e^-7	0.039	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	712384	3L_712384_SNP [dm3] 3L_712384_SNP [dm6]	T	C	3.540e^-7	0.044	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712335	3L_712335_SNP [dm3] 3L_712335_SNP [dm6]	T	A	4.002e^-7	0.045	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712423	3L_712423_SNP [dm3] 3L_712423_SNP [dm6]	G	C	4.120e^-7	0.045	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712374	3L_712374_SNP [dm3] 3L_712374_SNP [dm6]	G	C	5.417e^-7	0.056	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712343	3L_712343_SNP [dm3] 3L_712343_SNP [dm6]	A	C	1.105e^-6	0.109	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	6879142	2R_6879142_SNP [dm3] 2R_10991637_SNP [dm6]	G	A	1.237e^-6	0.116	INTRON luna	TF binding site mE1_TFBS_chinmo
3L	16202346	3L_16202346_SNP [dm3] 3L_16209246_SNP [dm6]	C	T	1.336e^-6	0.119	INTERGENIC	TF binding site mE1_TFBS_cad
3L	712319	3L_712319_INS [dm3] 3L_712319_INS [dm6]	C	CA	1.489e^-6	0.121	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712342	3L_712342_SNP [dm3] 3L_712342_SNP [dm6]	A	T	1.489e^-6	0.121	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	8207850	3L_8207850_SNP [dm3] 3L_8214750_SNP [dm6]	T	C	1.764e^-6	0.138	UPSTREAM CG8012 INTERGENIC
3L	712455	3L_712455_SNP [dm3] 3L_712455_SNP [dm6]	C	T	2.096e^-6	0.157	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	6962276	2R_6962276_SNP [dm3] 2R_11074771_SNP [dm6]	A	G	2.789e^-6	0.201	INTRON luna
3L	712323	3L_712323_SNP [dm3] 3L_712323_SNP [dm6]	T	A	2.982e^-6	0.207	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	7270458	2L_7270458_SNP [dm3] 2L_7270458_SNP [dm6]	A	G	3.111e^-6	0.208	INTRON Wnt4
3L	4737896	3L_4737896_SNP [dm3] 3L_4737896_SNP [dm6]	G	A	3.656e^-6	0.229	INTRON RhoGEF64C
3L	4737895	3L_4737895_SNP [dm3] 3L_4737895_SNP [dm6]	A	G	3.668e^-6	0.229	INTRON RhoGEF64C
3L	712501	3L_712501_SNP [dm3] 3L_712501_SNP [dm6]	C	G	4.850e^-6	0.279	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	12615746	3L_12615746_MNP [dm3] 3L_12622646_MNP [dm6]	GAA	AGC	4.926e^-6	0.279	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	19667126	3L_19667126_SNP [dm3] 3L_19674026_SNP [dm6]	T	C	5.006e^-6	0.279	INTERGENIC
3L	712322	3L_712322_SNP [dm3] 3L_712322_SNP [dm6]	A	G	5.059e^-6	0.279	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	9688709	3L_9688709_SNP [dm3] 3L_9695609_SNP [dm6]	C	G	5.383e^-6	0.284	UPSTREAM CG6767 INTRON CG6767 EXON CR45121	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6963718	2R_6963718_SNP [dm3] 2R_11076213_SNP [dm6]	A	G	5.454e^-6	0.284	INTRON luna	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19835455	2L_19835455_SNP [dm3] 2L_19835455_SNP [dm6]	A	C	5.844e^-6	0.296	INTRON sick
X	5228684	X_5228684_SNP [dm3] X_5334651_SNP [dm6]	C	T	6.184e^-6	0.305	DOWNSTREAM CanB INTERGENIC
2R	8134266	2R_8134266_SNP [dm3] 2R_12246761_SNP [dm6]	C	T	6.346e^-6	0.305	EXON CR44315
X	3934025	X_3934025_SNP [dm3] X_4039992_SNP [dm6]	C	A	6.836e^-6	0.32	INTERGENIC
3R	14368783	3R_14368783_SNP [dm3] 3R_18543061_SNP [dm6]	A	G	7.098e^-6	0.325	INTRON fru
2R	6016574	2R_6016574_SNP [dm3] 2R_10129069_SNP [dm6]	G	A	7.842e^-6	0.35	INTRON gem	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	16102044	2L_16102044_DEL [dm3] 2L_16102044_DEL [dm6]	AG	A	8.198e^-6	0.357	INTERGENIC
3L	6479135	3L_6479135_SNP [dm3] 3L_6486035_SNP [dm6]	A	G	8.725e^-6	0.359	DOWNSTREAM CG10147 & 1 other INTERGENIC
2L	16135147	2L_16135147_SNP [dm3] 2L_16135147_SNP [dm6]	G	A	9.063e^-6	0.359	DOWNSTREAM CR44871 & 1 other INTRON CG34168
2R	19503954	2R_19503954_SNP [dm3] 2R_23616431_SNP [dm6]	C	T	9.332e^-6	0.359	INTRON CG17664
3L	713048	3L_713048_SNP [dm3] 3L_713048_SNP [dm6]	G	C	9.387e^-6	0.359	INTERGENIC	TF binding site mE1_TFBS_sens
3L	12615738	3L_12615738_SNP [dm3] 3L_12622638_SNP [dm6]	C	G	9.416e^-6	0.359	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	14972052	3R_14972052_SNP [dm3] 3R_19146330_SNP [dm6]	A	G	9.648e^-6	0.359	INTRON Ppcs
2L	387696	2L_387696_SNP [dm3] 2L_387696_SNP [dm6]	T	A	9.665e^-6	0.359	DOWNSTREAM al INTERGENIC
3L	14815465	3L_14815465_SNP [dm3] 3L_14822365_SNP [dm6]	G	A	9.769e^-6	0.359	INTRON CG17839
2L	3825068	2L_3825068_SNP [dm3] 2L_3825068_SNP [dm6]	T	G	1.050e^-5	0.362	UPSTREAM slp1 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	1.058e^-5	0.362	EXON CR44950
3R	13682419	3R_13682419_SNP [dm3] 3R_17856697_SNP [dm6]	T	C	1.063e^-5	0.362	INTRON tinc
3R	13682437	3R_13682437_SNP [dm3] 3R_17856715_SNP [dm6]	G	C	1.063e^-5	0.362	INTRON tinc
2L	5777937	2L_5777937_SNP [dm3] 2L_5777937_SNP [dm6]	G	A	1.096e^-5	0.367	INTRON CG9171	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	20658290	2R_20658290_DEL [dm3] 2R_24770767_DEL [dm6]	TG	T	1.160e^-5	0.376	UTR_3_PRIME Eps-15 INTRON Eps-15	TF binding site BDTNP1_TFBS_prd
X	3035763	X_3035763_DEL [dm3] X_3141730_DEL [dm6]	GG	G	1.200e^-5	0.376	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	19804790	2L_19804790_SNP [dm3] 2L_19804790_SNP [dm6]	C	G	1.211e^-5	0.376	INTRON sick
3L	4737892	3L_4737892_SNP [dm3] 3L_4737892_SNP [dm6]	T	C	1.250e^-5	0.376	INTRON RhoGEF64C
2L	19802428	2L_19802428_SNP [dm3] 2L_19802428_SNP [dm6]	A	G	1.266e^-5	0.376	INTRON sick
2L	14695058	2L_14695058_SNP [dm3] 2L_14695058_SNP [dm6]	G	A	1.277e^-5	0.376	INTERGENIC
3R	4342921	3R_4342921_SNP [dm3] 3R_8517199_SNP [dm6]	C	T	1.301e^-5	0.376	UPSTREAM CG11737 INTERGENIC
X	3934017	X_3934017_SNP [dm3] X_4039984_SNP [dm6]	T	A	1.301e^-5	0.376	INTERGENIC
3L	677700	3L_677700_SNP [dm3] 3L_677700_SNP [dm6]	T	A	1.302e^-5	0.376	DOWNSTREAM CG17129 INTERGENIC
2L	3437649	2L_3437649_SNP [dm3] 2L_3437649_SNP [dm6]	A	T	1.327e^-5	0.377	INTERGENIC
2L	19802446	2L_19802446_SNP [dm3] 2L_19802446_SNP [dm6]	A	G	1.356e^-5	0.379	INTRON sick
2L	19835414	2L_19835414_SNP [dm3] 2L_19835414_SNP [dm6]	C	T	1.387e^-5	0.381	INTRON sick
X	9638379	X_9638379_SNP [dm3] X_9744346_SNP [dm6]	T	C	1.404e^-5	0.381	INTRON Sp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	22043005	3L_22043005_SNP [dm3] 3L_22049905_SNP [dm6]	A	T	1.462e^-5	0.386	INTRON Oct-TyrR
2L	8956572	2L_8956572_SNP [dm3] 2L_8956572_SNP [dm6]	A	T	1.463e^-5	0.386	UPSTREAM CG31886 INTRON CG31886	TF binding site BDTNP1_TFBS_twi mE1_TFBS_zfh1
3R	21989388	3R_21989388_SNP [dm3] 3R_26163666_SNP [dm6]	A	T	1.484e^-5	0.386	INTERGENIC
3R	24412989	3R_24412989_SNP [dm3] 3R_28587267_SNP [dm6]	T	C	1.526e^-5	0.389	EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
X	5228937	X_5228937_INS [dm3] X_5334904_INS [dm6]	C	CTACACTCGCAAAAAAAAAA...	1.534e^-5	0.389	DOWNSTREAM CanB INTERGENIC
X	5228746	X_5228746_SNP [dm3] X_5334713_SNP [dm6]	G	C	1.600e^-5	0.389	DOWNSTREAM CanB INTERGENIC
3R	14370392	3R_14370392_INS [dm3] 3R_18544670_INS [dm6]	C	CAGATTTAAT	1.609e^-5	0.389	INTRON fru
3L	1564689	3L_1564689_SNP [dm3] 3L_1564689_SNP [dm6]	T	C	1.615e^-5	0.389	UPSTREAM CG12003 INTRON CG7879
X	18636906	X_18636906_SNP [dm3] X_18742873_SNP [dm6]	C	T	1.666e^-5	0.389	INTERGENIC
3R	21989378	3R_21989378_SNP [dm3] 3R_26163656_SNP [dm6]	G	A	1.676e^-5	0.389	INTERGENIC
3R	21989380	3R_21989380_SNP [dm3] 3R_26163658_SNP [dm6]	T	C	1.676e^-5	0.389	INTERGENIC
2L	19841437	2L_19841437_SNP [dm3] 2L_19841437_SNP [dm6]	G	A	1.679e^-5	0.389	INTRON sick
X	13018717	X_13018717_SNP [dm3] X_13124684_SNP [dm6]	C	T	1.704e^-5	0.39	INTRON CG32638
2R	3603547	2R_3603547_SNP [dm3] 2R_7716042_SNP [dm6]	T	G	1.787e^-5	0.401	NON_SYNONYMOUS_CODING CG1946 DOWNSTREAM CG18812	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4824383	2L_4824383_SNP [dm3] 2L_4824383_SNP [dm6]	G	A	1.825e^-5	0.401	INTRON CG15628	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	20991674	2L_20991674_SNP [dm3] 2L_20991674_SNP [dm6]	C	A	1.850e^-5	0.401	INTRON CG42238
3R	22160103	3R_22160103_SNP [dm3] 3R_26334381_SNP [dm6]	A	T	1.856e^-5	0.401	INTRON CG33970
3L	15483333	3L_15483333_SNP [dm3] 3L_15490233_SNP [dm6]	T	C	1.861e^-5	0.401	INTERGENIC
3R	5446560	3R_5446560_DEL [dm3] 3R_9620838_DEL [dm6]	AAAACAGTGG	A	1.920e^-5	0.409	INTRON CG8312
3L	13549841	3L_13549841_SNP [dm3] 3L_13556741_SNP [dm6]	A	G	1.960e^-5	0.413	INTRON bru-3
2L	21065012	2L_21065012_SNP [dm3] 2L_21065012_SNP [dm6]	T	A	2.051e^-5	0.427	INTRON CG9265
3L	9686786	3L_9686786_SNP [dm3] 3L_9693686_SNP [dm6]	C	T	2.080e^-5	0.427	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	4824435	2L_4824435_SNP [dm3] 2L_4824435_SNP [dm6]	A	G	2.097e^-5	0.427	INTRON CG15628	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	21386998	3L_21386998_SNP [dm3] 3L_21393898_SNP [dm6]	G	A	2.251e^-5	0.436	INTRON rgn
2L	19813910	2L_19813910_SNP [dm3] 2L_19813910_SNP [dm6]	C	T	2.333e^-5	0.436	SYNONYMOUS_CODING CG13962 INTRON sick	TF binding site mE1_TFBS_HSA
3L	1564489	3L_1564489_SNP [dm3] 3L_1564489_SNP [dm6]	A	G	2.339e^-5	0.436	UPSTREAM CG12003 INTRON CG7879
3L	22099562	3L_22099562_SNP [dm3] 3L_22106462_SNP [dm6]	C	T	2.371e^-5	0.436	INTERGENIC
3R	24413164	3R_24413164_SNP [dm3] 3R_28587442_SNP [dm6]	C	T	2.411e^-5	0.436	EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	8151400	3L_8151400_SNP [dm3] 3L_8158300_SNP [dm6]	A	T	2.412e^-5	0.436	INTRON CG42445
3L	709523	3L_709523_SNP [dm3] 3L_709523_SNP [dm6]	T	A	2.427e^-5	0.436	INTRON CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3L	712622	3L_712622_SNP [dm3] 3L_712622_SNP [dm6]	G	A	2.432e^-5	0.436	UPSTREAM CG13896 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	7270455	2L_7270455_SNP [dm3] 2L_7270455_SNP [dm6]	T	C	2.455e^-5	0.436	INTRON Wnt4
3L	9688724	3L_9688724_SNP [dm3] 3L_9695624_SNP [dm6]	T	A	2.457e^-5	0.436	UPSTREAM CG6767 INTRON CG6767 EXON CR45121	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	16135128	2L_16135128_SNP [dm3] 2L_16135128_SNP [dm6]	T	A	2.469e^-5	0.436	DOWNSTREAM CR44871 & 1 other INTRON CG34168
3L	6714238	3L_6714238_SNP [dm3] 3L_6721138_SNP [dm6]	T	C	2.509e^-5	0.436	INTERGENIC
X	13137038	X_13137038_SNP [dm3] X_13243005_SNP [dm6]	A	G	2.541e^-5	0.436	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	14813948	3L_14813948_SNP [dm3] 3L_14820848_SNP [dm6]	G	A	2.556e^-5	0.436	INTRON CG17839
2R	16289150	2R_16289150_SNP [dm3] 2R_20401645_SNP [dm6]	G	A	2.610e^-5	0.436	INTERGENIC
3L	712066	3L_712066_SNP [dm3] 3L_712066_SNP [dm6]	G	A	2.616e^-5	0.436	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	8448106	2L_8448106_SNP [dm3] 2L_8448106_SNP [dm6]	G	A	2.618e^-5	0.436	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22671390	3R_22671390_SNP [dm3] 3R_26845668_SNP [dm6]	A	G	2.634e^-5	0.436	INTRON Lerp
3R	24353994	3R_24353994_SNP [dm3] 3R_28528272_SNP [dm6]	G	A	2.639e^-5	0.436	NON_SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7991476	3L_7991476_SNP [dm3] 3L_7998376_SNP [dm6]	C	T	2.657e^-5	0.436	INTRON nmo	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2L	3238066	2L_3238066_SNP [dm3] 2L_3238066_SNP [dm6]	C	T	2.682e^-5	0.436	INTERGENIC
X	13137037	X_13137037_SNP [dm3] X_13243004_SNP [dm6]	C	T	2.724e^-5	0.436	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	9687137	3L_9687137_SNP [dm3] 3L_9694037_SNP [dm6]	T	C	2.733e^-5	0.436	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	9687160	3L_9687160_SNP [dm3] 3L_9694060_SNP [dm6]	G	T	2.733e^-5	0.436	UPSTREAM CR45121 INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	10627152	3L_10627152_SNP [dm3] 3L_10634052_SNP [dm6]	C	T	2.747e^-5	0.436	DOWNSTREAM E_z_ & 1 other INTRON CG34001
2L	14150313	2L_14150313_SNP [dm3] 2L_14150313_SNP [dm6]	T	C	2.781e^-5	0.436	INTRON CG17341
3R	12971257	3R_12971257_SNP [dm3] 3R_17145535_SNP [dm6]	A	C	2.788e^-5	0.436	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3R	12971260	3R_12971260_DEL [dm3] 3R_17145538_DEL [dm6]	AGGTAAGCATCCTA...	G	2.788e^-5	0.436	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
X	3035757	X_3035757_SNP [dm3] X_3141724_SNP [dm6]	A	T	2.844e^-5	0.438	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	25672069	3R_25672069_SNP [dm3] 3R_29846347_SNP [dm6]	T	A	2.867e^-5	0.438	INTRON Cad99C
X	16154167	X_16154167_SNP [dm3] X_16260134_SNP [dm6]	T	A	2.920e^-5	0.438	INTERGENIC
3L	1321787	3L_1321787_SNP [dm3] 3L_1321787_SNP [dm6]	C	T	2.924e^-5	0.438	DOWNSTREAM CG9184 INTRON Myo61F
3L	13310290	3L_13310290_SNP [dm3] 3L_13317190_SNP [dm6]	T	G	2.976e^-5	0.438	INTERGENIC
3L	22042974	3L_22042974_SNP [dm3] 3L_22049874_SNP [dm6]	C	T	3.022e^-5	0.438	INTRON Oct-TyrR
3L	17624822	3L_17624822_SNP [dm3] 3L_17631722_SNP [dm6]	G	C	3.032e^-5	0.438	DOWNSTREAM CG7510 EXON CR44566
X	19421607	X_19421607_DEL [dm3] X_19527574_DEL [dm6]	CAC	C	3.036e^-5	0.438	UPSTREAM CoRest INTRON CoRest	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16135106	2L_16135106_DEL [dm3] 2L_16135106_DEL [dm6]	ATGAAA	A	3.075e^-5	0.438	DOWNSTREAM CR44871 & 1 other INTRON CG34168
2L	19802421	2L_19802421_SNP [dm3] 2L_19802421_SNP [dm6]	A	C	3.142e^-5	0.438	INTRON sick
2L	19804784	2L_19804784_SNP [dm3] 2L_19804784_SNP [dm6]	A	C	3.214e^-5	0.438	INTRON sick
X	6956997	X_6956997_SNP [dm3] X_7062964_SNP [dm6]	T	C	3.248e^-5	0.438	INTRON CG12541
2R	8133682	2R_8133682_SNP [dm3] 2R_12246177_SNP [dm6]	T	A	3.251e^-5	0.438	DOWNSTREAM CR44315 INTERGENIC
2R	15874958	2R_15874958_SNP [dm3] 2R_19987453_SNP [dm6]	G	A	3.259e^-5	0.438	INTERGENIC
2L	8448676	2L_8448676_SNP [dm3] 2L_8448676_SNP [dm6]	G	T	3.334e^-5	0.438	SYNONYMOUS_CODING U26
3L	13339531	3L_13339531_SNP [dm3] 3L_13346431_SNP [dm6]	G	T	3.353e^-5	0.438	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7479975	3L_7479975_SNP [dm3] 3L_7486875_SNP [dm6]	T	C	3.419e^-5	0.438	SYNONYMOUS_CODING mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5694802	3L_5694802_SNP [dm3] 3L_5701702_SNP [dm6]	T	G	3.497e^-5	0.438	INTRON sif
2L	22909511	2L_22909511_SNP [dm3] 2L_23016779_SNP [dm6]	G	A	3.502e^-5	0.438	INTRON Cht3
X	5114751	X_5114751_SNP [dm3] X_5220718_SNP [dm6]	G	A	3.510e^-5	0.438	INTRON CG15465 & 1 other
3L	8323320	3L_8323320_SNP [dm3] 3L_8330220_SNP [dm6]	T	A	3.525e^-5	0.438	UTR_3_PRIME CG34462
3L	711108	3L_711108_SNP [dm3] 3L_711108_SNP [dm6]	G	T	3.532e^-5	0.438	NON_SYNONYMOUS_CODING CG13896 UPSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3R	1686134	3R_1686134_SNP [dm3] 3R_5860412_SNP [dm6]	A	C	3.535e^-5	0.438	SPLICE_SITE_REGION CG2017 INTRON CG2017
2L	19802933	2L_19802933_SNP [dm3] 2L_19802933_SNP [dm6]	G	A	3.561e^-5	0.438	INTRON sick
3L	709549	3L_709549_SNP [dm3] 3L_709549_SNP [dm6]	A	T	3.564e^-5	0.438	SPLICE_SITE_REGION CkIIalpha-i3 INTRON CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
2L	16135142	2L_16135142_SNP [dm3] 2L_16135142_SNP [dm6]	C	T	3.594e^-5	0.438	DOWNSTREAM CR44871 & 1 other INTRON CG34168
3L	22100461	3L_22100461_DEL [dm3] 3L_22107361_DEL [dm6]	CC	C	3.616e^-5	0.438	INTERGENIC
2L	18783947	2L_18783947_SNP [dm3] 2L_18783947_SNP [dm6]	C	T	3.628e^-5	0.438	INTRON ham	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2L	16135150	2L_16135150_SNP [dm3] 2L_16135150_SNP [dm6]	G	T	3.632e^-5	0.438	DOWNSTREAM CR44871 & 1 other INTRON CG34168
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	3.643e^-5	0.438	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18933150	2R_18933150_SNP [dm3] 2R_23045627_SNP [dm6]	C	T	3.718e^-5	0.438	UPSTREAM twi INTRON twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	19808957	2L_19808957_SNP [dm3] 2L_19808957_SNP [dm6]	T	A	3.749e^-5	0.438	INTRON sick	TF binding site mE1_TFBS_cad
2L	6499760	2L_6499760_SNP [dm3] 2L_6499760_SNP [dm6]	G	A	3.752e^-5	0.438	SYNONYMOUS_CODING CG31637	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	713137	3L_713137_SNP [dm3] 3L_713137_SNP [dm6]	A	G	3.758e^-5	0.438	INTERGENIC	TF binding site mE1_TFBS_sens
3L	15483234	3L_15483234_SNP [dm3] 3L_15490134_SNP [dm6]	A	C	3.763e^-5	0.438	INTERGENIC
3L	4647084	3L_4647084_INS [dm3] 3L_4647084_INS [dm6]	T	TC	3.786e^-5	0.438	INTRON axo
3L	22105899	3L_22105899_SNP [dm3] 3L_22112799_SNP [dm6]	C	T	3.802e^-5	0.438	INTERGENIC
X	4093930	X_4093930_SNP [dm3] X_4199897_SNP [dm6]	T	C	3.874e^-5	0.438	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	698684	2L_698684_DEL [dm3] 2L_698684_DEL [dm6]	AA	A	3.882e^-5	0.438	INTRON ds
2L	19896738	2L_19896738_SNP [dm3] 2L_19896738_SNP [dm6]	T	A	3.886e^-5	0.438	INTRON sick
2L	19803822	2L_19803822_SNP [dm3] 2L_19803822_SNP [dm6]	G	A	3.889e^-5	0.438	INTRON sick
3L	3966618	3L_3966618_DEL [dm3] 3L_3966618_DEL [dm6]	CCGCTGTCC	C	4.002e^-5	0.438	INTERGENIC
3L	22112300	3L_22112300_INS [dm3] 3L_22119200_INS [dm6]	C	GCCCCATCTG	4.008e^-5	0.438	INTERGENIC
2L	19802314	2L_19802314_SNP [dm3] 2L_19802314_SNP [dm6]	C	T	4.029e^-5	0.438	INTRON sick
X	1196886	X_1196886_SNP [dm3] X_1302853_SNP [dm6]	T	C	4.052e^-5	0.438	INTRON DAAM	TF binding site mE1_TFBS_chinmo
3L	14410434	3L_14410434_SNP [dm3] 3L_14417334_SNP [dm6]	G	A	4.065e^-5	0.438	INTRON bbg
3R	4512365	3R_4512365_SNP [dm3] 3R_8686643_SNP [dm6]	G	A	4.071e^-5	0.438	UPSTREAM CR44937 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19840286	2L_19840286_SNP [dm3] 2L_19840286_SNP [dm6]	C	A	4.110e^-5	0.438	INTRON sick
2L	9487588	2L_9487588_SNP [dm3] 2L_9487588_SNP [dm6]	A	G	4.168e^-5	0.438	INTERGENIC
3R	14368829	3R_14368829_SNP [dm3] 3R_18543107_SNP [dm6]	T	A	4.168e^-5	0.438	INTRON fru
2L	8447265	2L_8447265_SNP [dm3] 2L_8447265_SNP [dm6]	A	G	4.179e^-5	0.438	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	6714534	3L_6714534_SNP [dm3] 3L_6721434_SNP [dm6]	G	T	4.231e^-5	0.438	INTERGENIC
3L	16921097	3L_16921097_SNP [dm3] 3L_16927997_SNP [dm6]	C	T	4.247e^-5	0.438	UPSTREAM CG13023 DOWNSTREAM CG11905 INTERGENIC
3L	15483232	3L_15483232_SNP [dm3] 3L_15490132_SNP [dm6]	A	T	4.252e^-5	0.438	INTERGENIC
X	4094020	X_4094020_SNP [dm3] X_4199987_SNP [dm6]	T	C	4.267e^-5	0.438	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	16135146	2L_16135146_SNP [dm3] 2L_16135146_SNP [dm6]	T	A	4.288e^-5	0.438	DOWNSTREAM CR44871 & 1 other INTRON CG34168
2L	8447278	2L_8447278_SNP [dm3] 2L_8447278_SNP [dm6]	T	G	4.322e^-5	0.438	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	22043497	3L_22043497_DEL [dm3] 3L_22050397_DEL [dm6]	CC	C	4.325e^-5	0.438	INTRON Oct-TyrR
3L	22085444	3L_22085444_SNP [dm3] 3L_22092344_SNP [dm6]	C	T	4.325e^-5	0.438	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	22086131	3L_22086131_SNP [dm3] 3L_22093031_SNP [dm6]	A	G	4.325e^-5	0.438	INTERGENIC
3L	22086458	3L_22086458_SNP [dm3] 3L_22093358_SNP [dm6]	G	A	4.325e^-5	0.438	INTERGENIC
3L	22106630	3L_22106630_SNP [dm3] 3L_22113530_SNP [dm6]	C	G	4.325e^-5	0.438	INTERGENIC
3L	10627138	3L_10627138_SNP [dm3] 3L_10634038_SNP [dm6]	A	C	4.398e^-5	0.438	DOWNSTREAM E_z_ & 1 other INTRON CG34001
3L	10627139	3L_10627139_SNP [dm3] 3L_10634039_SNP [dm6]	C	A	4.398e^-5	0.438	DOWNSTREAM E_z_ & 1 other INTRON CG34001
2L	16239804	2L_16239804_SNP [dm3] 2L_16239804_SNP [dm6]	C	T	4.399e^-5	0.438	INTRON CG42817
3L	13310271	3L_13310271_SNP [dm3] 3L_13317171_SNP [dm6]	C	T	4.401e^-5	0.438	INTERGENIC
3L	1564534	3L_1564534_INS [dm3] 3L_1564534_INS [dm6]	A	AA	4.424e^-5	0.438	UPSTREAM CG12003 INTRON CG7879
2L	1195440	2L_1195440_SNP [dm3] 2L_1195440_SNP [dm6]	C	T	4.443e^-5	0.438	INTRON CG5001
2L	6508912	2L_6508912_SNP [dm3] 2L_6508912_SNP [dm6]	T	A	4.465e^-5	0.438	UPSTREAM CR44775 INTRON CG31637	TF binding site BDTNP1_TFBS_hb
3R	25973021	3R_25973021_SNP [dm3] 3R_30147299_SNP [dm6]	T	C	4.465e^-5	0.438	INTRON AdoR
3L	22042981	3L_22042981_SNP [dm3] 3L_22049881_SNP [dm6]	G	T	4.482e^-5	0.438	INTRON Oct-TyrR
3L	9299142	3L_9299142_SNP [dm3] 3L_9306042_SNP [dm6]	G	A	4.483e^-5	0.438	INTERGENIC
3L	10627144	3L_10627144_SNP [dm3] 3L_10634044_SNP [dm6]	G	T	4.570e^-5	0.44	DOWNSTREAM E_z_ & 1 other INTRON CG34001
3R	25614556	3R_25614556_INS [dm3] 3R_29788834_INS [dm6]	A	ACATA	4.616e^-5	0.44	UPSTREAM kay INTRON kay
2R	6966595	2R_6966595_SNP [dm3] 2R_11079090_SNP [dm6]	A	G	4.637e^-5	0.44	INTRON luna	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4934322	3R_4934322_SNP [dm3] 3R_9108600_SNP [dm6]	C	T	4.655e^-5	0.44	INTRON pum
3L	7309076	3L_7309076_SNP [dm3] 3L_7315976_SNP [dm6]	T	C	4.666e^-5	0.44	INTERGENIC
3L	7309077	3L_7309077_SNP [dm3] 3L_7315977_SNP [dm6]	T	C	4.666e^-5	0.44	INTERGENIC
2L	16135119	2L_16135119_SNP [dm3] 2L_16135119_SNP [dm6]	A	G	4.669e^-5	0.44	DOWNSTREAM CR44871 & 1 other INTRON CG34168
2R	6016548	2R_6016548_SNP [dm3] 2R_10129043_SNP [dm6]	C	T	4.754e^-5	0.44	INTRON gem	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	22030324	3L_22030324_SNP [dm3] 3L_22037224_SNP [dm6]	T	C	4.820e^-5	0.44	INTRON Oct-TyrR
3R	13682475	3R_13682475_SNP [dm3] 3R_17856753_SNP [dm6]	G	A	4.834e^-5	0.44	INTRON tinc
3L	22099935	3L_22099935_SNP [dm3] 3L_22106835_SNP [dm6]	G	A	4.873e^-5	0.44	INTERGENIC
3L	22065675	3L_22065675_SNP [dm3] 3L_22072575_SNP [dm6]	A	T	4.878e^-5	0.44	UPSTREAM CG7139 DOWNSTREAM CG7133 EXON CR43995	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3825075	2L_3825075_SNP [dm3] 2L_3825075_SNP [dm6]	T	A	4.885e^-5	0.44	UPSTREAM slp1 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	6846539	3L_6846539_SNP [dm3] 3L_6853439_SNP [dm6]	C	T	4.899e^-5	0.44	INTERGENIC
3R	10436858	3R_10436858_SNP [dm3] 3R_14611136_SNP [dm6]	T	C	4.903e^-5	0.44	INTRON CG14853
3L	4737859	3L_4737859_SNP [dm3] 3L_4737859_SNP [dm6]	A	G	4.933e^-5	0.44	INTRON RhoGEF64C
2L	19841561	2L_19841561_SNP [dm3] 2L_19841561_SNP [dm6]	C	A	4.947e^-5	0.44	INTRON sick
3L	22100989	3L_22100989_DEL [dm3] 3L_22107889_DEL [dm6]	AC	A	4.958e^-5	0.44	INTERGENIC
3L	22100995	3L_22100995_DEL [dm3] 3L_22107895_DEL [dm6]	AAGGAGC	A	4.958e^-5	0.44	INTERGENIC
X	18640623	X_18640623_INS [dm3] X_18746590_INS [dm6]	G	GG	4.977e^-5	0.44	UTR_3_PRIME CG12609
2L	8507679	2L_8507679_SNP [dm3] 2L_8507679_SNP [dm6]	T	A	5.121e^-5	0.45	UPSTREAM Dh31 INTERGENIC
2R	17727974	2R_17727974_SNP [dm3] 2R_21840469_SNP [dm6]	A	G	5.175e^-5	0.45	INTERGENIC
3L	14489373	3L_14489373_SNP [dm3] 3L_14496273_SNP [dm6]	C	T	5.176e^-5	0.45	INTRON bbg	TF binding site mE1_TFBS_cad
3L	15483312	3L_15483312_SNP [dm3] 3L_15490212_SNP [dm6]	A	G	5.235e^-5	0.45	INTERGENIC
X	8291487	X_8291487_SNP [dm3] X_8397454_SNP [dm6]	T	A	5.243e^-5	0.45	UTR_3_PRIME CG15345
2L	8740651	2L_8740651_SNP [dm3] 2L_8740651_SNP [dm6]	T	A	5.257e^-5	0.45	UTR_5_PRIME raw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3L	12615832	3L_12615832_SNP [dm3] 3L_12622732_SNP [dm6]	C	A	5.260e^-5	0.45	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	8448070	2L_8448070_SNP [dm3] 2L_8448070_SNP [dm6]	C	T	5.298e^-5	0.451	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4340520	3R_4340520_SNP [dm3] 3R_8514798_SNP [dm6]	T	A	5.367e^-5	0.452	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	18480610	3R_18480610_SNP [dm3] 3R_22654888_SNP [dm6]	T	C	5.369e^-5	0.452	INTRON CG45058
2L	6511556	2L_6511556_SNP [dm3] 2L_6511556_SNP [dm6]	T	C	5.371e^-5	0.452	INTRON CG31637
3L	9513593	3L_9513593_SNP [dm3] 3L_9520493_SNP [dm6]	G	T	5.453e^-5	0.453	INTRON CG33700
2R	17621665	2R_17621665_SNP [dm3] 2R_21734160_SNP [dm6]	T	A	5.468e^-5	0.453	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	9685669	3L_9685669_SNP [dm3] 3L_9692569_SNP [dm6]	A	G	5.498e^-5	0.453	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	16135137	2L_16135137_SNP [dm3] 2L_16135137_SNP [dm6]	A	T	5.506e^-5	0.453	DOWNSTREAM CR44871 & 1 other INTRON CG34168
X	4093939	X_4093939_SNP [dm3] X_4199906_SNP [dm6]	A	C	5.519e^-5	0.453	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	14917683	X_14917683_DEL [dm3] X_15023650_DEL [dm6]	TC	T	5.533e^-5	0.453	UPSTREAM be INTRON hiw	TF binding site mE1_TFBS_Trl transposable element FlyBase
2R	10343861	2R_10343861_SNP [dm3] 2R_14456356_SNP [dm6]	T	G	5.561e^-5	0.453	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4382182	3R_4382182_SNP [dm3] 3R_8556460_SNP [dm6]	G	A	5.628e^-5	0.457	INTERGENIC
2L	16135118	2L_16135118_SNP [dm3] 2L_16135118_SNP [dm6]	G	A	5.652e^-5	0.457	DOWNSTREAM CR44871 & 1 other INTRON CG34168
3L	10626334	3L_10626334_SNP [dm3] 3L_10633234_SNP [dm6]	C	T	5.705e^-5	0.457	SYNONYMOUS_CODING hay INTRON CG34001
3R	10574845	3R_10574845_SNP [dm3] 3R_14749123_SNP [dm6]	C	T	5.731e^-5	0.457	UPSTREAM jvl & 1 other INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3L	12615764	3L_12615764_SNP [dm3] 3L_12622664_SNP [dm6]	T	A	5.732e^-5	0.457	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4824431	2L_4824431_SNP [dm3] 2L_4824431_SNP [dm6]	A	T	5.757e^-5	0.457	INTRON CG15628	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	22052881	3L_22052881_SNP [dm3] 3L_22059781_SNP [dm6]	A	T	5.771e^-5	0.457	INTRON Oct-TyrR
3L	7461509	3L_7461509_SNP [dm3] 3L_7468409_SNP [dm6]	G	T	5.848e^-5	0.458	UTR_3_PRIME CG42660 & 2 others
2L	3668458	2L_3668458_SNP [dm3] 2L_3668458_SNP [dm6]	G	A	5.852e^-5	0.458	DOWNSTREAM CG42463 & 1 other INTRON CG34340 & 1 other
2R	17590899	2R_17590899_SNP [dm3] 2R_21703394_SNP [dm6]	G	A	5.880e^-5	0.458	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3L	12615821	3L_12615821_SNP [dm3] 3L_12622721_SNP [dm6]	C	T	5.908e^-5	0.458	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	711035	3L_711035_SNP [dm3] 3L_711035_SNP [dm6]	A	G	5.970e^-5	0.458	SYNONYMOUS_CODING CG13896 UPSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	19798779	2L_19798779_SNP [dm3] 2L_19798779_SNP [dm6]	C	A	5.993e^-5	0.458	INTRON sick
2R	18838480	2R_18838480_SNP [dm3] 2R_22950957_SNP [dm6]	A	G	6.029e^-5	0.458	DOWNSTREAM CR32835 INTERGENIC
X	21921468	X_21921468_SNP [dm3] X_22519632_SNP [dm6]	A	G	6.039e^-5	0.458	INTRON CG17600
3L	22042964	3L_22042964_SNP [dm3] 3L_22049864_SNP [dm6]	C	G	6.046e^-5	0.458	INTRON Oct-TyrR
2L	1195489	2L_1195489_SNP [dm3] 2L_1195489_SNP [dm6]	T	C	6.052e^-5	0.458	INTRON CG5001
3L	7209302	3L_7209302_INS [dm3] 3L_7216202_INS [dm6]	T	TGCTTTT	6.065e^-5	0.458	INTERGENIC
3L	9726588	3L_9726588_SNP [dm3] 3L_9733488_SNP [dm6]	G	A	6.136e^-5	0.462	DOWNSTREAM mir-4986 & 1 other INTRON CG6749
2L	18783946	2L_18783946_SNP [dm3] 2L_18783946_SNP [dm6]	C	T	6.175e^-5	0.463	INTRON ham	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
X	17503877	X_17503877_SNP [dm3] X_17609844_SNP [dm6]	G	T	6.225e^-5	0.463	INTERGENIC
X	17952248	X_17952248_SNP [dm3] X_18058215_SNP [dm6]	C	A	6.238e^-5	0.463	INTRON Sh
3L	13549586	3L_13549586_SNP [dm3] 3L_13556486_SNP [dm6]	C	A	6.258e^-5	0.463	INTRON bru-3
2R	18985584	2R_18985584_SNP [dm3] 2R_23098061_SNP [dm6]	T	C	6.303e^-5	0.463	INTERGENIC
3L	6902842	3L_6902842_SNP [dm3] 3L_6909742_SNP [dm6]	C	T	6.320e^-5	0.463	INTERGENIC
3L	14135497	3L_14135497_SNP [dm3] 3L_14142397_SNP [dm6]	G	A	6.378e^-5	0.463	INTERGENIC	regulatory region REDfly_CRMs
3L	13310278	3L_13310278_SNP [dm3] 3L_13317178_SNP [dm6]	C	G	6.393e^-5	0.463	INTERGENIC
2L	19830693	2L_19830693_SNP [dm3] 2L_19830693_SNP [dm6]	A	G	6.405e^-5	0.463	INTRON sick
3R	14368832	3R_14368832_SNP [dm3] 3R_18543110_SNP [dm6]	T	A	6.431e^-5	0.463	INTRON fru
2L	19802424	2L_19802424_SNP [dm3] 2L_19802424_SNP [dm6]	A	T	6.442e^-5	0.463	INTRON sick
2R	4952865	2R_4952865_SNP [dm3] 2R_9065360_SNP [dm6]	G	A	6.450e^-5	0.463	INTRON ana	regulatory region REDfly_CRMs
2L	8668772	2L_8668772_SNP [dm3] 2L_8668772_SNP [dm6]	C	T	6.509e^-5	0.465	UTR_3_PRIME Sema-1a DOWNSTREAM Sema-1a
2L	3119891	2L_3119891_SNP [dm3] 2L_3119891_SNP [dm6]	A	G	6.540e^-5	0.465	INTRON toc
2R	3935024	2R_3935024_SNP [dm3] 2R_8047519_SNP [dm6]	C	T	6.549e^-5	0.465	INTERGENIC
3L	16331253	3L_16331253_SNP [dm3] 3L_16338153_SNP [dm6]	G	C	6.622e^-5	0.467	UPSTREAM CG4998 INTERGENIC
3R	3719215	3R_3719215_SNP [dm3] 3R_7893493_SNP [dm6]	A	G	6.642e^-5	0.467	INTRON mRpS9 & 1 other
3R	25128569	3R_25128569_DEL [dm3] 3R_29302847_DEL [dm6]	GG	G	6.645e^-5	0.467	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4934321	3R_4934321_SNP [dm3] 3R_9108599_SNP [dm6]	G	A	6.771e^-5	0.473	INTRON pum
3L	4289756	3L_4289756_SNP [dm3] 3L_4289756_SNP [dm6]	C	A	6.824e^-5	0.473	SYNONYMOUS_CODING Hexo1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17267393	2R_17267393_SNP [dm3] 2R_21379888_SNP [dm6]	A	C	6.827e^-5	0.473	UPSTREAM cv-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	19803606	2L_19803606_SNP [dm3] 2L_19803606_SNP [dm6]	C	T	6.861e^-5	0.473	INTRON sick
3L	22103648	3L_22103648_SNP [dm3] 3L_22110548_SNP [dm6]	T	C	6.868e^-5	0.473	INTERGENIC
3L	15483252	3L_15483252_SNP [dm3] 3L_15490152_SNP [dm6]	G	T	6.994e^-5	0.477	INTERGENIC
2R	4952874	2R_4952874_SNP [dm3] 2R_9065369_SNP [dm6]	G	A	7.042e^-5	0.477	INTRON ana	regulatory region REDfly_CRMs
2L	19903507	2L_19903507_SNP [dm3] 2L_19903507_SNP [dm6]	C	T	7.058e^-5	0.477	INTRON sick
2L	19817600	2L_19817600_SNP [dm3] 2L_19817600_SNP [dm6]	A	C	7.096e^-5	0.477	INTRON sick	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	13570329	3R_13570329_SNP [dm3] 3R_17744607_SNP [dm6]	A	C	7.120e^-5	0.477	INTRON TyrRII	TF binding site mE1_TFBS_cad
2L	5789717	2L_5789717_SNP [dm3] 2L_5789717_SNP [dm6]	C	T	7.133e^-5	0.477	INTRON CG9171	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14489354	3L_14489354_SNP [dm3] 3L_14496254_SNP [dm6]	T	A	7.136e^-5	0.477	INTRON bbg	TF binding site mE1_TFBS_cad
2L	19802454	2L_19802454_SNP [dm3] 2L_19802454_SNP [dm6]	G	T	7.174e^-5	0.477	INTRON sick
X	13026679	X_13026679_SNP [dm3] X_13132646_SNP [dm6]	T	G	7.193e^-5	0.477	INTRON MFS10 & 1 other
2R	10096977	2R_10096977_SNP [dm3] 2R_14209472_SNP [dm6]	C	T	7.228e^-5	0.477	INTRON Sox15	regulatory region REDfly_CRMs
3L	22047427	3L_22047427_SNP [dm3] 3L_22054327_SNP [dm6]	G	T	7.265e^-5	0.477	INTRON Oct-TyrR	TF binding site mE1_TFBS_HSA
2L	15545226	2L_15545226_SNP [dm3] 2L_15545226_SNP [dm6]	A	C	7.283e^-5	0.477	INTERGENIC
2L	7206708	2L_7206708_SNP [dm3] 2L_7206708_SNP [dm6]	G	A	7.303e^-5	0.477	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784	TF binding site mE1_TFBS_sens
2R	11484577	2R_11484577_SNP [dm3] 2R_15597072_SNP [dm6]	C	A	7.343e^-5	0.477	INTERGENIC
2L	14694914	2L_14694914_SNP [dm3] 2L_14694914_SNP [dm6]	C	T	7.387e^-5	0.477	INTERGENIC
3L	2645600	3L_2645600_SNP [dm3] 3L_2645600_SNP [dm6]	A	T	7.413e^-5	0.477	INTRON CG1143	TF binding site mE1_TFBS_cad
3L	4439196	3L_4439196_SNP [dm3] 3L_4439196_SNP [dm6]	C	T	7.436e^-5	0.477	DOWNSTREAM CG15021 INTERGENIC
3R	16987115	3R_16987115_SNP [dm3] 3R_21161393_SNP [dm6]	A	T	7.463e^-5	0.477	UPSTREAM CG10824 INTRON SNF4Agamma
3L	1733503	3L_1733503_SNP [dm3] 3L_1733503_SNP [dm6]	G	A	7.465e^-5	0.477	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19502631	2R_19502631_SNP [dm3] 2R_23615108_SNP [dm6]	T	C	7.470e^-5	0.477	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
2L	19830668	2L_19830668_SNP [dm3] 2L_19830668_SNP [dm6]	C	G	7.470e^-5	0.477	INTRON sick
3L	709537	3L_709537_SNP [dm3] 3L_709537_SNP [dm6]	A	T	7.486e^-5	0.477	INTRON CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
2L	16008401	2L_16008401_SNP [dm3] 2L_16008401_SNP [dm6]	C	T	7.554e^-5	0.48	INTRON beat-Ic	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13549577	3L_13549577_SNP [dm3] 3L_13556477_SNP [dm6]	G	A	7.622e^-5	0.48	INTRON bru-3
3L	22883797	3L_22883797_SNP [dm3] 3L_22890697_SNP [dm6]	A	G	7.644e^-5	0.48	INTRON slif	transposable element FlyBase
3R	6726397	3R_6726397_SNP [dm3] 3R_10900675_SNP [dm6]	A	G	7.646e^-5	0.48	INTERGENIC
3R	14954238	3R_14954238_SNP [dm3] 3R_19128516_SNP [dm6]	T	A	7.673e^-5	0.48	INTRON CG6040
3L	5886015	3L_5886015_SNP [dm3] 3L_5892915_SNP [dm6]	C	G	7.709e^-5	0.48	INTERGENIC
2L	20861189	2L_20861189_SNP [dm3] 2L_20861189_SNP [dm6]	T	G	7.712e^-5	0.48	DOWNSTREAM CG9336 INTERGENIC	TF binding site mE1_TFBS_inv
3L	10626331	3L_10626331_SNP [dm3] 3L_10633231_SNP [dm6]	G	T	7.777e^-5	0.481	SYNONYMOUS_CODING hay INTRON CG34001
X	19572577	X_19572577_SNP [dm3] X_19678544_SNP [dm6]	G	A	7.778e^-5	0.481	SYNONYMOUS_CODING dome	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4825443	2L_4825443_SNP [dm3] 2L_4825443_SNP [dm6]	C	G	7.872e^-5	0.483	INTRON CG15628
3R	13682812	3R_13682812_SNP [dm3] 3R_17857090_SNP [dm6]	G	C	7.931e^-5	0.483	INTRON tinc
3L	1564487	3L_1564487_SNP [dm3] 3L_1564487_SNP [dm6]	C	A	7.985e^-5	0.483	UPSTREAM CG12003 INTRON CG7879
3L	9515093	3L_9515093_SNP [dm3] 3L_9521993_SNP [dm6]	C	G	8.004e^-5	0.483	INTRON CG33700
3R	3469607	3R_3469607_SNP [dm3] 3R_7643885_SNP [dm6]	C	T	8.008e^-5	0.483	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4339924	3R_4339924_SNP [dm3] 3R_8514202_SNP [dm6]	A	G	8.022e^-5	0.483	INTERGENIC
2L	21736965	2L_21736965_DEL [dm3] 2L_21736965_DEL [dm6]	AGACTCGGACTGTTT...	A	8.026e^-5	0.483	INTERGENIC	transposable element FlyBase
3L	1828555	3L_1828555_SNP [dm3] 3L_1828555_SNP [dm6]	C	A	8.047e^-5	0.483	INTRON Cpr62Ba
3R	10574868	3R_10574868_SNP [dm3] 3R_14749146_SNP [dm6]	T	A	8.073e^-5	0.483	UPSTREAM jvl & 1 other INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2R	3665693	2R_3665693_SNP [dm3] 2R_7778188_SNP [dm6]	A	T	8.122e^-5	0.483	INTRON CG30497 & 1 other
X	19218792	X_19218792_SNP [dm3] X_19324759_SNP [dm6]	A	G	8.148e^-5	0.483	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	8447795	2L_8447795_SNP [dm3] 2L_8447795_SNP [dm6]	C	T	8.171e^-5	0.483	SYNONYMOUS_CODING U26 UTR_3_PRIME U26
3L	14919557	3L_14919557_SNP [dm3] 3L_14926457_SNP [dm6]	T	G	8.172e^-5	0.483	UTR_5_PRIME DCX-EMAP INTRON DCX-EMAP	TF binding site mE1_TFBS_cad
2L	19890116	2L_19890116_SNP [dm3] 2L_19890116_SNP [dm6]	T	A	8.175e^-5	0.483	DOWNSTREAM CG10481 INTRON sick
3L	16202307	3L_16202307_SNP [dm3] 3L_16209207_SNP [dm6]	T	C	8.224e^-5	0.484	INTERGENIC	TF binding site mE1_TFBS_cad
3L	1734682	3L_1734682_DEL [dm3] 3L_1734682_DEL [dm6]	AA	A	8.236e^-5	0.484	INTRON Oseg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	4461691	X_4461691_SNP [dm3] X_4567658_SNP [dm6]	G	A	8.264e^-5	0.484	INTRON CR32773
2L	18783907	2L_18783907_SNP [dm3] 2L_18783907_SNP [dm6]	T	A	8.319e^-5	0.486	INTRON ham	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2L	19890129	2L_19890129_SNP [dm3] 2L_19890129_SNP [dm6]	G	A	8.393e^-5	0.488	DOWNSTREAM CG10481 INTRON sick
X	5447631	X_5447631_SNP [dm3] X_5553598_SNP [dm6]	A	C	8.515e^-5	0.488	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl
X	17952250	X_17952250_SNP [dm3] X_18058217_SNP [dm6]	G	A	8.523e^-5	0.488	INTRON Sh
2R	20605740	2R_20605740_SNP [dm3] 2R_24718217_SNP [dm6]	G	C	8.582e^-5	0.488	INTRON Mid1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4339621	3R_4339621_SNP [dm3] 3R_8513899_SNP [dm6]	C	G	8.609e^-5	0.488	UPSTREAM Or85c INTERGENIC
3L	7461504	3L_7461504_SNP [dm3] 3L_7468404_SNP [dm6]	A	C	8.652e^-5	0.488	UTR_3_PRIME CG42660 & 2 others
3R	2693041	3R_2693041_SNP [dm3] 3R_6867319_SNP [dm6]	G	A	8.710e^-5	0.488	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3L	9515094	3L_9515094_SNP [dm3] 3L_9521994_SNP [dm6]	T	A	8.716e^-5	0.488	INTRON CG33700
2R	15460518	2R_15460518_SNP [dm3] 2R_19573013_SNP [dm6]	A	G	8.750e^-5	0.488	INTRON sm	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	27146681	3R_27146681_SNP [dm3] 3R_31320959_SNP [dm6]	C	A	8.792e^-5	0.488	INTRON CG34347
3L	6714269	3L_6714269_SNP [dm3] 3L_6721169_SNP [dm6]	T	A	8.851e^-5	0.488	INTERGENIC
3L	17672015	3L_17672015_SNP [dm3] 3L_17678915_SNP [dm6]	A	T	8.858e^-5	0.488	INTRON CG34251
3L	1321892	3L_1321892_SNP [dm3] 3L_1321892_SNP [dm6]	T	G	8.881e^-5	0.488	UTR_3_PRIME CG9184 DOWNSTREAM CR45166 INTRON Myo61F	TF binding site mE1_TFBS_cad
3L	1321896	3L_1321896_SNP [dm3] 3L_1321896_SNP [dm6]	C	T	8.881e^-5	0.488	UTR_3_PRIME CG9184 DOWNSTREAM CR45166 INTRON Myo61F	TF binding site mE1_TFBS_cad
3L	9726604	3L_9726604_SNP [dm3] 3L_9733504_SNP [dm6]	A	T	8.914e^-5	0.488	DOWNSTREAM mir-4986 & 1 other INTRON CG6749
2R	8344426	2R_8344426_SNP [dm3] 2R_12456921_SNP [dm6]	C	T	8.935e^-5	0.488	INTRON Lac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19821796	2L_19821796_SNP [dm3] 2L_19821796_SNP [dm6]	C	A	8.965e^-5	0.488	INTRON sick
2L	16135131	2L_16135131_SNP [dm3] 2L_16135131_SNP [dm6]	A	G	8.989e^-5	0.488	DOWNSTREAM CR44871 & 1 other INTRON CG34168
2R	15461046	2R_15461046_SNP [dm3] 2R_19573541_SNP [dm6]	A	G	8.998e^-5	0.488	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1321740	3L_1321740_SNP [dm3] 3L_1321740_SNP [dm6]	G	A	9.000e^-5	0.488	DOWNSTREAM CG9184 INTRON Myo61F
3L	7806419	3L_7806419_SNP [dm3] 3L_7813319_SNP [dm6]	C	T	9.022e^-5	0.488	UTR_3_PRIME Pdp1
3R	2952106	3R_2952106_SNP [dm3] 3R_7126384_SNP [dm6]	G	A	9.083e^-5	0.488	UTR_3_PRIME CG10098 & 1 other
3L	1321681	3L_1321681_SNP [dm3] 3L_1321681_SNP [dm6]	G	T	9.086e^-5	0.488	DOWNSTREAM CG9184 INTRON Myo61F
3R	13897848	3R_13897848_SNP [dm3] 3R_18072126_SNP [dm6]	G	A	9.098e^-5	0.488	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9686649	3L_9686649_SNP [dm3] 3L_9693549_SNP [dm6]	G	A	9.153e^-5	0.488	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	2957893	2R_2957893_SNP [dm3] 2R_7070388_SNP [dm6]	A	C	9.192e^-5	0.488	UPSTREAM tRNA:CR30298 DOWNSTREAM CG12831 & 2 others INTERGENIC
3L	14919578	3L_14919578_SNP [dm3] 3L_14926478_SNP [dm6]	A	G	9.193e^-5	0.488	UTR_5_PRIME DCX-EMAP INTRON DCX-EMAP
3L	22054911	3L_22054911_SNP [dm3] 3L_22061811_SNP [dm6]	C	T	9.218e^-5	0.488	INTRON Oct-TyrR
2L	19803156	2L_19803156_SNP [dm3] 2L_19803156_SNP [dm6]	T	G	9.280e^-5	0.488	INTRON sick
2L	19802397	2L_19802397_SNP [dm3] 2L_19802397_SNP [dm6]	T	A	9.287e^-5	0.488	INTRON sick
2L	4624701	2L_4624701_SNP [dm3] 2L_4624701_SNP [dm6]	C	T	9.294e^-5	0.488	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1109916	3L_1109916_SNP [dm3] 3L_1109916_SNP [dm6]	C	T	9.311e^-5	0.488	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	1101004	3L_1101004_SNP [dm3] 3L_1101004_SNP [dm6]	C	T	9.349e^-5	0.488	UTR_5_PRIME bab1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3L	12055410	3L_12055410_SNP [dm3] 3L_12062310_SNP [dm6]	C	T	9.393e^-5	0.488	INTRON rols	TF binding site BDTNP1_TFBS_da
X	21921583	X_21921583_SNP [dm3] X_22519747_SNP [dm6]	T	G	9.399e^-5	0.488	INTRON CG17600
2L	19840678	2L_19840678_SNP [dm3] 2L_19840678_SNP [dm6]	A	G	9.443e^-5	0.488	INTRON sick
2L	3131466	2L_3131466_SNP [dm3] 2L_3131466_SNP [dm6]	T	C	9.456e^-5	0.488	INTRON toc
3R	16987203	3R_16987203_SNP [dm3] 3R_21161481_SNP [dm6]	G	C	9.501e^-5	0.488	UPSTREAM CG10824 INTRON SNF4Agamma
3L	15483205	3L_15483205_SNP [dm3] 3L_15490105_SNP [dm6]	G	A	9.526e^-5	0.488	INTERGENIC
X	21921317	X_21921317_SNP [dm3] X_22519481_SNP [dm6]	C	T	9.554e^-5	0.488	INTRON CG17600
3L	7479886	3L_7479886_SNP [dm3] 3L_7486786_SNP [dm6]	C	T	9.624e^-5	0.488	INTRON mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1198368	2L_1198368_SNP [dm3] 2L_1198368_SNP [dm6]	T	C	9.636e^-5	0.488	DOWNSTREAM CG5139 INTERGENIC
2L	19816621	2L_19816621_SNP [dm3] 2L_19816621_SNP [dm6]	A	G	9.655e^-5	0.488	UPSTREAM snRNA:U2:38ABa DOWNSTREAM snRNA:U5:38ABb INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	15716292	3L_15716292_SNP [dm3] 3L_15723192_SNP [dm6]	C	A	9.655e^-5	0.488	SYNONYMOUS_CODING comm
X	5702342	X_5702342_SNP [dm3] X_5808309_SNP [dm6]	G	A	9.739e^-5	0.488	UPSTREAM Prosbeta2R1 INTERGENIC
2L	6511526	2L_6511526_SNP [dm3] 2L_6511526_SNP [dm6]	A	G	9.811e^-5	0.488	INTRON CG31637
2L	9850607	2L_9850607_SNP [dm3] 2L_9850607_SNP [dm6]	T	C	9.845e^-5	0.488	INTRON nAChRalpha6
2L	19830653	2L_19830653_SNP [dm3] 2L_19830653_SNP [dm6]	C	G	9.881e^-5	0.488	INTRON sick
3L	22028560	3L_22028560_SNP [dm3] 3L_22035460_SNP [dm6]	C	A	9.897e^-5	0.488	UTR_5_PRIME Oct-TyrR
3L	22037769	3L_22037769_SNP [dm3] 3L_22044669_SNP [dm6]	A	G	9.897e^-5	0.488	INTRON Oct-TyrR
3L	22037770	3L_22037770_SNP [dm3] 3L_22044670_SNP [dm6]	G	A	9.897e^-5	0.488	INTRON Oct-TyrR
3L	22048386	3L_22048386_SNP [dm3] 3L_22055286_SNP [dm6]	C	A	9.897e^-5	0.488	INTRON Oct-TyrR	TF binding site BDTNP1_TFBS_da
3L	22049031	3L_22049031_SNP [dm3] 3L_22055931_SNP [dm6]	T	A	9.897e^-5	0.488	INTRON Oct-TyrR
3L	22052404	3L_22052404_SNP [dm3] 3L_22059304_SNP [dm6]	G	T	9.897e^-5	0.488	INTRON Oct-TyrR
3L	22053256	3L_22053256_SNP [dm3] 3L_22060156_SNP [dm6]	C	T	9.897e^-5	0.488	INTRON Oct-TyrR
3L	22054406	3L_22054406_SNP [dm3] 3L_22061306_SNP [dm6]	G	A	9.897e^-5	0.488	NON_SYNONYMOUS_CODING Oct-TyrR
3R	10437015	3R_10437015_SNP [dm3] 3R_14611293_SNP [dm6]	A	T	9.907e^-5	0.488	INTRON CG14853
2L	5883882	2L_5883882_SNP [dm3] 2L_5883882_SNP [dm6]	C	A	9.916e^-5	0.488	NON_SYNONYMOUS_CODING CG44574 DOWNSTREAM Sfp26Ac
3L	9690515	3L_9690515_SNP [dm3] 3L_9697415_SNP [dm6]	T	A	9.935e^-5	0.488	UPSTREAM CG6767 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	16824644	3L_16824644_SNP [dm3] 3L_16831544_SNP [dm6]	A	G	9.949e^-5	0.488	INTERGENIC	TF binding site mE1_TFBS_inv
3R	19126952	3R_19126952_SNP [dm3] 3R_23301230_SNP [dm6]	G	A	1.002e^-4	0.488	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	1192845	X_1192845_SNP [dm3] X_1298812_SNP [dm6]	C	T	1.005e^-4	0.488	UPSTREAM CG32811 INTRON DAAM	TF binding site mE1_TFBS_chinmo
3L	10627130	3L_10627130_SNP [dm3] 3L_10634030_SNP [dm6]	G	A	1.005e^-4	0.488	DOWNSTREAM E_z_ & 1 other INTRON CG34001
2L	7992195	2L_7992195_SNP [dm3] 2L_7992195_SNP [dm6]	C	A	1.009e^-4	0.488	UPSTREAM pes INTRON pes	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	22029742	3L_22029742_SNP [dm3] 3L_22036642_SNP [dm6]	C	T	1.011e^-4	0.488	INTRON Oct-TyrR
2L	19890124	2L_19890124_SNP [dm3] 2L_19890124_SNP [dm6]	T	G	1.014e^-4	0.488	DOWNSTREAM CG10481 INTRON sick
2L	19841857	2L_19841857_SNP [dm3] 2L_19841857_SNP [dm6]	T	C	1.015e^-4	0.488	INTRON sick
2R	9460681	2R_9460681_SNP [dm3] 2R_13573176_SNP [dm6]	G	T	1.021e^-4	0.488	UPSTREAM CG42807 DOWNSTREAM CG42808 INTERGENIC
3R	13019603	3R_13019603_SNP [dm3] 3R_17193881_SNP [dm6]	A	G	1.023e^-4	0.488	INTRON Mur89F
2L	19830651	2L_19830651_SNP [dm3] 2L_19830651_SNP [dm6]	T	C	1.028e^-4	0.488	INTRON sick
3L	22107958	3L_22107958_SNP [dm3] 3L_22114858_SNP [dm6]	T	G	1.029e^-4	0.488	INTERGENIC
2R	3665721	2R_3665721_SNP [dm3] 2R_7778216_SNP [dm6]	C	T	1.037e^-4	0.488	INTRON CG30497 & 1 other
3L	15308611	3L_15308611_SNP [dm3] 3L_15315511_SNP [dm6]	T	C	1.039e^-4	0.488	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	9257385	2L_9257385_SNP [dm3] 2L_9257385_SNP [dm6]	T	C	1.042e^-4	0.488	INTRON Ggamma30A	TF binding site BDTNP1_TFBS_z
3L	7479848	3L_7479848_SNP [dm3] 3L_7486748_SNP [dm6]	C	A	1.042e^-4	0.488	SPLICE_SITE_REGION mthl6 INTRON mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16432980	3L_16432980_SNP [dm3] 3L_16439880_SNP [dm6]	A	T	1.047e^-4	0.488	INTRON CG33158 & 1 other
2L	5777926	2L_5777926_SNP [dm3] 2L_5777926_SNP [dm6]	G	A	1.048e^-4	0.488	INTRON CG9171	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	5145048	3R_5145048_SNP [dm3] 3R_9319326_SNP [dm6]	G	A	1.058e^-4	0.488	INTRON CG8861
2L	3825069	2L_3825069_SNP [dm3] 2L_3825069_SNP [dm6]	T	C	1.060e^-4	0.488	UPSTREAM slp1 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	17892833	2R_17892833_SNP [dm3] 2R_22005328_SNP [dm6]	G	A	1.064e^-4	0.488	INTRON CG34370
2L	19803402	2L_19803402_SNP [dm3] 2L_19803402_SNP [dm6]	T	C	1.066e^-4	0.488	INTRON sick
X	6357688	X_6357688_SNP [dm3] X_6463655_SNP [dm6]	A	G	1.073e^-4	0.488	DOWNSTREAM CG42340 INTRON CG42340
3L	22046954	3L_22046954_SNP [dm3] 3L_22053854_SNP [dm6]	G	C	1.078e^-4	0.488	INTRON Oct-TyrR
3L	5878986	3L_5878986_SNP [dm3] 3L_5885886_SNP [dm6]	G	A	1.082e^-4	0.488	INTERGENIC
3L	11525805	3L_11525805_SNP [dm3] 3L_11532705_SNP [dm6]	G	A	1.087e^-4	0.488	INTRON Mob2
3R	13019604	3R_13019604_INS [dm3] 3R_17193882_INS [dm6]	A	AACCTATTGAACCTATTGAA...	1.087e^-4	0.488	INTRON Mur89F
3L	22053454	3L_22053454_SNP [dm3] 3L_22060354_SNP [dm6]	G	T	1.090e^-4	0.488	INTRON Oct-TyrR
2L	19802451	2L_19802451_SNP [dm3] 2L_19802451_SNP [dm6]	T	G	1.095e^-4	0.488	INTRON sick
3R	14950843	3R_14950843_SNP [dm3] 3R_19125121_SNP [dm6]	A	G	1.101e^-4	0.488	SYNONYMOUS_CODING CG6040	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11617856	3L_11617856_SNP [dm3] 3L_11624756_SNP [dm6]	T	G	1.103e^-4	0.488	SYNONYMOUS_CODING CG6083 UPSTREAM CG6084
3R	27189510	3R_27189510_SNP [dm3] 3R_31363788_SNP [dm6]	C	T	1.104e^-4	0.488	INTRON CG34347
3R	27189648	3R_27189648_SNP [dm3] 3R_31363926_SNP [dm6]	C	T	1.104e^-4	0.488	INTRON CG34347
3R	27189682	3R_27189682_SNP [dm3] 3R_31363960_SNP [dm6]	A	T	1.104e^-4	0.488	INTRON CG34347
3L	22035837	3L_22035837_SNP [dm3] 3L_22042737_SNP [dm6]	A	T	1.105e^-4	0.488	INTRON Oct-TyrR
2L	4016813	2L_4016813_SNP [dm3] 2L_4016813_SNP [dm6]	T	C	1.105e^-4	0.488	INTERGENIC
2L	21775574	2L_21775574_INS [dm3] 2L_21775574_INS [dm6]	A	ATC	1.105e^-4	0.488	INTRON CG31612	TF binding site mE1_TFBS_HSA transposable element FlyBase
3L	1321771	3L_1321771_SNP [dm3] 3L_1321771_SNP [dm6]	A	G	1.106e^-4	0.488	DOWNSTREAM CG9184 INTRON Myo61F
3L	1321779	3L_1321779_SNP [dm3] 3L_1321779_SNP [dm6]	A	G	1.106e^-4	0.488	DOWNSTREAM CG9184 INTRON Myo61F
3R	21989341	3R_21989341_SNP [dm3] 3R_26163619_SNP [dm6]	C	A	1.112e^-4	0.488	INTERGENIC
3L	14811233	3L_14811233_SNP [dm3] 3L_14818133_SNP [dm6]	C	T	1.114e^-4	0.488	INTRON CG17839
3L	12615818	3L_12615818_SNP [dm3] 3L_12622718_SNP [dm6]	C	T	1.115e^-4	0.488	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	23777427	3R_23777427_SNP [dm3] 3R_27951705_SNP [dm6]	A	G	1.118e^-4	0.488	SYNONYMOUS_CODING Gp93 DOWNSTREAM CG4951	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15310397	3L_15310397_SNP [dm3] 3L_15317297_SNP [dm6]	T	C	1.119e^-4	0.488	INTERGENIC
3L	1744940	3L_1744940_SNP [dm3] 3L_1744940_SNP [dm6]	T	G	1.120e^-4	0.488	SYNONYMOUS_CODING Gk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10574955	3R_10574955_SNP [dm3] 3R_14749233_SNP [dm6]	T	C	1.123e^-4	0.488	UPSTREAM jvl & 1 other INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3L	5694805	3L_5694805_SNP [dm3] 3L_5701705_SNP [dm6]	G	A	1.124e^-4	0.488	INTRON sif
2R	13286730	2R_13286730_SNP [dm3] 2R_17399225_SNP [dm6]	G	T	1.124e^-4	0.488	INTRON Sip1
3L	711093	3L_711093_SNP [dm3] 3L_711093_SNP [dm6]	C	G	1.126e^-4	0.488	NON_SYNONYMOUS_CODING CG13896 UPSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
2R	15874982	2R_15874982_SNP [dm3] 2R_19987477_SNP [dm6]	C	T	1.126e^-4	0.488	INTERGENIC
2R	9263659	2R_9263659_SNP [dm3] 2R_13376154_SNP [dm6]	C	A	1.127e^-4	0.488	UTR_3_PRIME CG10814	TF binding site mE1_TFBS_chinmo
2L	19825522	2L_19825522_SNP [dm3] 2L_19825522_SNP [dm6]	C	T	1.128e^-4	0.488	UPSTREAM sick INTRON sick
2R	19502482	2R_19502482_SNP [dm3] 2R_23614959_SNP [dm6]	T	C	1.130e^-4	0.488	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
3L	8127746	3L_8127746_SNP [dm3] 3L_8134646_SNP [dm6]	A	G	1.137e^-4	0.488	SYNONYMOUS_CODING CG7504
2L	19798193	2L_19798193_SNP [dm3] 2L_19798193_SNP [dm6]	G	A	1.138e^-4	0.488	INTRON sick
3R	22141543	3R_22141543_SNP [dm3] 3R_26315821_SNP [dm6]	T	A	1.139e^-4	0.488	INTERGENIC
3R	26772843	3R_26772843_SNP [dm3] 3R_30947121_SNP [dm6]	T	C	1.141e^-4	0.488	INTERGENIC
X	6356386	X_6356386_SNP [dm3] X_6462353_SNP [dm6]	T	C	1.145e^-4	0.488	INTRON CG42340
3L	1145165	3L_1145165_SNP [dm3] 3L_1145165_SNP [dm6]	A	C	1.149e^-4	0.488	INTRON bab2
3L	9298626	3L_9298626_SNP [dm3] 3L_9305526_SNP [dm6]	G	T	1.150e^-4	0.488	INTERGENIC
3R	22858352	3R_22858352_SNP [dm3] 3R_27032630_SNP [dm6]	T	C	1.151e^-4	0.488	INTRON RYa-R	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	6714335	3L_6714335_SNP [dm3] 3L_6721235_SNP [dm6]	A	T	1.152e^-4	0.488	INTERGENIC
2R	8134408	2R_8134408_SNP [dm3] 2R_12246903_SNP [dm6]	G	T	1.152e^-4	0.488	EXON CR44315
3R	5127985	3R_5127985_SNP [dm3] 3R_9302263_SNP [dm6]	C	A	1.171e^-4	0.491	INTRON CG8861
3R	21989336	3R_21989336_SNP [dm3] 3R_26163614_SNP [dm6]	T	C	1.172e^-4	0.491	INTERGENIC
3R	965045	3R_965045_SNP [dm3] 3R_5139323_SNP [dm6]	G	A	1.177e^-4	0.491	UPSTREAM CG12589 INTERGENIC
3L	9515096	3L_9515096_SNP [dm3] 3L_9521996_SNP [dm6]	A	G	1.178e^-4	0.491	INTRON CG33700
X	19671159	X_19671159_SNP [dm3] X_19777126_SNP [dm6]	T	C	1.179e^-4	0.491	UTR_3_PRIME vfl INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	19803809	2L_19803809_SNP [dm3] 2L_19803809_SNP [dm6]	C	T	1.180e^-4	0.491	INTRON sick
3R	21989351	3R_21989351_INS [dm3] 3R_26163629_INS [dm6]	A	ACTACTTAAAAGAGTAGC...	1.182e^-4	0.491	INTERGENIC
3R	21989354	3R_21989354_INS [dm3] 3R_26163632_INS [dm6]	T	TTTA	1.182e^-4	0.491	INTERGENIC
3L	16012821	3L_16012821_SNP [dm3] 3L_16019721_SNP [dm6]	C	A	1.184e^-4	0.491	DOWNSTREAM CR43949 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	4824200	2L_4824200_SNP [dm3] 2L_4824200_SNP [dm6]	G	A	1.191e^-4	0.492	INTRON CG15628	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	15308481	3L_15308481_SNP [dm3] 3L_15315381_SNP [dm6]	G	A	1.195e^-4	0.492	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	19816618	2L_19816618_SNP [dm3] 2L_19816618_SNP [dm6]	G	A	1.199e^-4	0.492	UPSTREAM snRNA:U2:38ABa DOWNSTREAM snRNA:U5:38ABb INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	22751254	3L_22751254_SNP [dm3] 3L_22758154_SNP [dm6]	A	G	1.201e^-4	0.492	INTRON SPoCk	TF binding site mE1_TFBS_HSA
3R	15047261	3R_15047261_SNP [dm3] 3R_19221539_SNP [dm6]	G	A	1.202e^-4	0.492	INTRON vib	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11072055	2L_11072055_SNP [dm3] 2L_11072055_SNP [dm6]	G	A	1.203e^-4	0.492	DOWNSTREAM CG14915 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22780339	3R_22780339_SNP [dm3] 3R_26954617_SNP [dm6]	T	C	1.208e^-4	0.492	INTRON CG6330	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14910332	3L_14910332_SNP [dm3] 3L_14917232_SNP [dm6]	A	G	1.210e^-4	0.492	INTRON DCX-EMAP
2L	16135196	2L_16135196_SNP [dm3] 2L_16135196_SNP [dm6]	T	C	1.211e^-4	0.492	START_GAINED CG34168 UTR_5_PRIME CG34168 DOWNSTREAM CR44871 & 1 other
3L	10013783	3L_10013783_SNP [dm3] 3L_10020683_SNP [dm6]	A	T	1.214e^-4	0.492	INTRON dpr6
3R	12970762	3R_12970762_SNP [dm3] 3R_17145040_SNP [dm6]	A	T	1.220e^-4	0.494	UTR_3_PRIME m-cup DOWNSTREAM m-cup
3L	2645866	3L_2645866_SNP [dm3] 3L_2645866_SNP [dm6]	A	G	1.226e^-4	0.494	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22858347	3R_22858347_SNP [dm3] 3R_27032625_SNP [dm6]	T	G	1.231e^-4	0.494	INTRON RYa-R	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	22042991	3L_22042991_DEL [dm3] 3L_22049891_DEL [dm6]	CTTTAC	C	1.232e^-4	0.494	INTRON Oct-TyrR
2L	19798335	2L_19798335_SNP [dm3] 2L_19798335_SNP [dm6]	A	G	1.234e^-4	0.494	INTRON sick
2L	19933467	2L_19933467_SNP [dm3] 2L_19933467_SNP [dm6]	T	A	1.235e^-4	0.494	DOWNSTREAM CR45183 INTRON sick
2L	5883093	2L_5883093_SNP [dm3] 2L_5883093_SNP [dm6]	A	G	1.239e^-4	0.494	UPSTREAM CG44574 INTERGENIC
3L	709440	3L_709440_SNP [dm3] 3L_709440_SNP [dm6]	G	C	1.242e^-4	0.494	NON_SYNONYMOUS_CODING CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3L	4737951	3L_4737951_SNP [dm3] 3L_4737951_SNP [dm6]	C	A	1.243e^-4	0.494	INTRON RhoGEF64C
3L	22044066	3L_22044066_SNP [dm3] 3L_22050966_SNP [dm6]	T	A	1.250e^-4	0.494	INTRON Oct-TyrR
2R	17696524	2R_17696524_SNP [dm3] 2R_21809019_SNP [dm6]	T	C	1.252e^-4	0.494	INTERGENIC
X	13026314	X_13026314_SNP [dm3] X_13132281_SNP [dm6]	T	G	1.252e^-4	0.494	INTRON MFS10 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	10560968	2L_10560968_SNP [dm3] 2L_10560968_SNP [dm6]	T	A	1.255e^-4	0.494	INTRON Trim9
2R	11724908	2R_11724908_SNP [dm3] 2R_15837403_SNP [dm6]	C	T	1.256e^-4	0.494	INTRON tun	regulatory region REDfly_CRMs
2R	14585253	2R_14585253_SNP [dm3] 2R_18697748_SNP [dm6]	G	C	1.262e^-4	0.496	DOWNSTREAM CG15071 INTRON Sik3
2L	1474417	2L_1474417_SNP [dm3] 2L_1474417_SNP [dm6]	C	T	1.272e^-4	0.498	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14813709	3L_14813709_SNP [dm3] 3L_14820609_SNP [dm6]	T	C	1.276e^-4	0.498	INTRON CG17839
2L	6601300	2L_6601300_SNP [dm3] 2L_6601300_SNP [dm6]	T	A	1.279e^-4	0.498	UPSTREAM CG11319 INTERGENIC
2L	16135324	2L_16135324_DEL [dm3] 2L_16135324_DEL [dm6]	GG	G	1.279e^-4	0.498	UPSTREAM CG34168 DOWNSTREAM CR44871 & 1 other INTERGENIC
2L	19901797	2L_19901797_DEL [dm3] 2L_19901797_DEL [dm6]	TAAAAACAAAA...	T	1.283e^-4	0.498	INTRON sick
3L	14910224	3L_14910224_SNP [dm3] 3L_14917124_SNP [dm6]	C	T	1.283e^-4	0.498	INTRON DCX-EMAP
3L	709565	3L_709565_SNP [dm3] 3L_709565_SNP [dm6]	C	T	1.296e^-4	0.501	NON_SYNONYMOUS_CODING CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
2L	8741274	2L_8741274_SNP [dm3] 2L_8741274_SNP [dm6]	T	A	1.296e^-4	0.501	UPSTREAM raw INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_kn
3L	12440333	3L_12440333_SNP [dm3] 3L_12447233_SNP [dm6]	A	T	1.299e^-4	0.501	INTERGENIC	TF binding site mE1_TFBS_HSA
X	2284466	X_2284466_SNP [dm3] X_2390433_SNP [dm6]	A	C	1.312e^-4	0.505	INTERGENIC
2R	17892192	2R_17892192_SNP [dm3] 2R_22004687_SNP [dm6]	A	G	1.313e^-4	0.505	INTRON CG34370
3L	4741046	3L_4741046_SNP [dm3] 3L_4741046_SNP [dm6]	G	A	1.322e^-4	0.505	INTRON RhoGEF64C
2R	18224679	2R_18224679_SNP [dm3] 2R_22337174_SNP [dm6]	G	T	1.324e^-4	0.505	DOWNSTREAM Liprin-gamma INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	8448559	2L_8448559_SNP [dm3] 2L_8448559_SNP [dm6]	C	T	1.329e^-4	0.505	SYNONYMOUS_CODING U26
3L	19496781	3L_19496781_SNP [dm3] 3L_19503681_SNP [dm6]	G	A	1.331e^-4	0.505	START_GAINED CG9452 UTR_5_PRIME CG9452
3R	26772845	3R_26772845_SNP [dm3] 3R_30947123_SNP [dm6]	A	G	1.332e^-4	0.505	INTERGENIC
3L	8695957	3L_8695957_DEL [dm3] 3L_8702857_DEL [dm6]	TAT	T	1.336e^-4	0.505	INTERGENIC
3L	16202254	3L_16202254_SNP [dm3] 3L_16209154_SNP [dm6]	C	T	1.337e^-4	0.505	INTERGENIC	TF binding site mE1_TFBS_cad
3R	10410917	3R_10410917_SNP [dm3] 3R_14585195_SNP [dm6]	A	T	1.337e^-4	0.505	INTRON stumps	TF binding site BDTNP1_TFBS_prd
3L	1321838	3L_1321838_SNP [dm3] 3L_1321838_SNP [dm6]	C	T	1.343e^-4	0.506	UTR_3_PRIME CG9184 INTRON Myo61F
3L	9689632	3L_9689632_INS [dm3] 3L_9696532_INS [dm6]	G	AA	1.347e^-4	0.507	DOWNSTREAM CR45121 INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6534172	2L_6534172_SNP [dm3] 2L_6534172_SNP [dm6]	C	T	1.353e^-4	0.507	INTRON eya	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	5529696	2R_5529696_SNP [dm3] 2R_9642191_SNP [dm6]	G	A	1.354e^-4	0.507	INTRON Mmp2
2R	3599792	2R_3599792_SNP [dm3] 2R_7712287_SNP [dm6]	A	G	1.356e^-4	0.507	UPSTREAM CG1942 DOWNSTREAM mir-4909 & 1 other INTERGENIC
3L	1564511	3L_1564511_SNP [dm3] 3L_1564511_SNP [dm6]	A	G	1.362e^-4	0.507	UPSTREAM CG12003 INTRON CG7879
3L	6902926	3L_6902926_SNP [dm3] 3L_6909826_SNP [dm6]	T	C	1.363e^-4	0.507	INTERGENIC
3L	6714504	3L_6714504_SNP [dm3] 3L_6721404_SNP [dm6]	C	A	1.363e^-4	0.507	INTERGENIC
2L	16219177	2L_16219177_SNP [dm3] 2L_16219177_SNP [dm6]	A	T	1.372e^-4	0.509	INTERGENIC
X	3287601	X_3287601_SNP [dm3] X_3393568_SNP [dm6]	A	T	1.374e^-4	0.509	INTRON CR44999 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	21024570	2L_21024570_SNP [dm3] 2L_21024570_SNP [dm6]	T	C	1.377e^-4	0.509	INTRON CG42238	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	22858373	3R_22858373_SNP [dm3] 3R_27032651_SNP [dm6]	T	G	1.379e^-4	0.509	INTRON RYa-R	TF binding site mE1_TFBS_HSA
3L	13316145	3L_13316145_SNP [dm3] 3L_13323045_SNP [dm6]	A	T	1.382e^-4	0.509	INTERGENIC
3R	21861258	3R_21861258_SNP [dm3] 3R_26035536_SNP [dm6]	A	T	1.388e^-4	0.51	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7199896	3L_7199896_SNP [dm3] 3L_7206796_SNP [dm6]	T	G	1.391e^-4	0.51	INTERGENIC
2L	8957211	2L_8957211_SNP [dm3] 2L_8957211_SNP [dm6]	A	T	1.394e^-4	0.51	INTRON CG31886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18885261	2L_18885261_SNP [dm3] 2L_18885261_SNP [dm6]	C	G	1.397e^-4	0.51	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	19825513	2L_19825513_DEL [dm3] 2L_19825513_DEL [dm6]	TT	T	1.401e^-4	0.51	UPSTREAM sick INTRON sick
X	1192886	X_1192886_SNP [dm3] X_1298853_SNP [dm6]	A	G	1.402e^-4	0.51	UPSTREAM CG32811 INTRON DAAM	TF binding site mE1_TFBS_chinmo
2R	15461091	2R_15461091_SNP [dm3] 2R_19573586_SNP [dm6]	G	T	1.405e^-4	0.51	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6131799	3L_6131799_SNP [dm3] 3L_6138699_SNP [dm6]	G	T	1.408e^-4	0.51	UPSTREAM Lcp65Ae DOWNSTREAM Cpr65Av INTERGENIC
2L	775095	2L_775095_SNP [dm3] 2L_775095_SNP [dm6]	C	A	1.411e^-4	0.51	INTERGENIC
X	21376602	X_21376602_SNP [dm3] X_21505575_SNP [dm6]	T	C	1.415e^-4	0.51	INTRON CR45082
X	765951	X_765951_SNP [dm3] X_871918_SNP [dm6]	A	G	1.416e^-4	0.51	INTRON CG43867
3L	710429	3L_710429_SNP [dm3] 3L_710429_SNP [dm6]	T	G	1.430e^-4	0.513	UTR_5_PRIME CkIIalpha-i3 UPSTREAM CkIIalpha-i3 DOWNSTREAM CG13896	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	14698893	3R_14698893_SNP [dm3] 3R_18873171_SNP [dm6]	G	A	1.435e^-4	0.513	INTERGENIC
X	10100908	X_10100908_SNP [dm3] X_10206875_SNP [dm6]	C	A	1.435e^-4	0.513	UTR_3_PRIME CG15309 INTRON CR44894
2R	18229379	2R_18229379_SNP [dm3] 2R_22341874_SNP [dm6]	T	A	1.436e^-4	0.513	INTRON Liprin-gamma	TF binding site mE1_TFBS_cad
2R	14312972	2R_14312972_SNP [dm3] 2R_18425467_SNP [dm6]	G	T	1.438e^-4	0.513	UTR_3_PRIME CG5174 UPSTREAM CG12263 INTRON CG5174	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	10212782	3R_10212782_SNP [dm3] 3R_14387060_SNP [dm6]	G	C	1.461e^-4	0.521	INTERGENIC
2R	17727818	2R_17727818_SNP [dm3] 2R_21840313_SNP [dm6]	A	T	1.465e^-4	0.521	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3872313	3L_3872313_SNP [dm3] 3L_3872313_SNP [dm6]	A	G	1.471e^-4	0.521	INTERGENIC
3R	15134591	3R_15134591_SNP [dm3] 3R_19308869_SNP [dm6]	T	C	1.471e^-4	0.521	INTRON Dl
2L	5918111	2L_5918111_SNP [dm3] 2L_5918111_SNP [dm6]	A	T	1.478e^-4	0.522	SYNONYMOUS_CODING bchs
2L	774927	2L_774927_SNP [dm3] 2L_774927_SNP [dm6]	A	T	1.483e^-4	0.522	DOWNSTREAM CG12506 INTERGENIC
X	1192858	X_1192858_SNP [dm3] X_1298825_SNP [dm6]	C	A	1.490e^-4	0.522	UPSTREAM CG32811 INTRON DAAM	TF binding site mE1_TFBS_chinmo
2L	19830673	2L_19830673_SNP [dm3] 2L_19830673_SNP [dm6]	A	T	1.495e^-4	0.522	INTRON sick
2L	20984347	2L_20984347_SNP [dm3] 2L_20984347_SNP [dm6]	T	C	1.495e^-4	0.522	INTRON CG42238
3L	9512504	3L_9512504_SNP [dm3] 3L_9519404_SNP [dm6]	A	T	1.504e^-4	0.522	INTRON CG33700
3L	711025	3L_711025_SNP [dm3] 3L_711025_SNP [dm6]	T	G	1.507e^-4	0.522	SYNONYMOUS_CODING CG13896 UPSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	9326901	3R_9326901_SNP [dm3] 3R_13501179_SNP [dm6]	C	A	1.514e^-4	0.522	INTERGENIC
2L	21055222	2L_21055222_SNP [dm3] 2L_21055222_SNP [dm6]	A	T	1.515e^-4	0.522	NON_SYNONYMOUS_CODING Itgbetanu	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21989373	3R_21989373_SNP [dm3] 3R_26163651_SNP [dm6]	C	T	1.515e^-4	0.522	INTERGENIC
2L	3668924	2L_3668924_SNP [dm3] 2L_3668924_SNP [dm6]	A	G	1.516e^-4	0.522	NON_SYNONYMOUS_CODING CG42463 UPSTREAM Sfp24Ba DOWNSTREAM Sfp24Bb INTRON CG34340
3R	2959625	3R_2959625_SNP [dm3] 3R_7133903_SNP [dm6]	A	G	1.520e^-4	0.522	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1195508	2L_1195508_SNP [dm3] 2L_1195508_SNP [dm6]	C	T	1.523e^-4	0.522	INTRON CG5001
3L	13316140	3L_13316140_SNP [dm3] 3L_13323040_SNP [dm6]	G	A	1.527e^-4	0.522	INTERGENIC
2R	16421916	2R_16421916_SNP [dm3] 2R_20534411_SNP [dm6]	A	G	1.533e^-4	0.522	UTR_5_PRIME CG18067 UPSTREAM CG18067 DOWNSTREAM CG30154
X	3779608	X_3779608_SNP [dm3] X_3885575_SNP [dm6]	A	G	1.537e^-4	0.522	INTRON CG15239
2L	8957160	2L_8957160_SNP [dm3] 2L_8957160_SNP [dm6]	C	A	1.538e^-4	0.522	INTRON CG31886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	14814340	3L_14814340_SNP [dm3] 3L_14821240_SNP [dm6]	G	C	1.541e^-4	0.522	INTRON CG17839
3L	10025717	3L_10025717_DEL [dm3] 3L_10032617_DEL [dm6]	GCTTTTGTTTAGTC...	G	1.547e^-4	0.522	INTRON dpr6
3R	18562668	3R_18562668_SNP [dm3] 3R_22736946_SNP [dm6]	G	T	1.549e^-4	0.522	NON_SYNONYMOUS_CODING Dcr-1
3R	7278969	3R_7278969_SNP [dm3] 3R_11453247_SNP [dm6]	A	G	1.550e^-4	0.522	SYNONYMOUS_CODING PGRP-LB INTRON CG17230	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16896011	3L_16896011_SNP [dm3] 3L_16902911_SNP [dm6]	A	T	1.551e^-4	0.522	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo
2L	19880293	2L_19880293_SNP [dm3] 2L_19880293_SNP [dm6]	A	T	1.556e^-4	0.522	INTRON sick
3R	14771210	3R_14771210_SNP [dm3] 3R_18945488_SNP [dm6]	G	A	1.559e^-4	0.522	INTRON CG42613
2L	19818318	2L_19818318_SNP [dm3] 2L_19818318_SNP [dm6]	A	G	1.559e^-4	0.522	INTRON sick	transposable element FlyBase
3R	10436798	3R_10436798_SNP [dm3] 3R_14611076_SNP [dm6]	T	C	1.560e^-4	0.522	INTRON CG14853
3L	9685627	3L_9685627_SNP [dm3] 3L_9692527_SNP [dm6]	A	G	1.561e^-4	0.522	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	9685634	3L_9685634_SNP [dm3] 3L_9692534_SNP [dm6]	C	T	1.561e^-4	0.522	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	9686029	3L_9686029_SNP [dm3] 3L_9692929_SNP [dm6]	A	T	1.561e^-4	0.522	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
3L	9686121	3L_9686121_SNP [dm3] 3L_9693021_SNP [dm6]	T	A	1.561e^-4	0.522	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
3R	15046806	3R_15046806_SNP [dm3] 3R_19221084_SNP [dm6]	A	G	1.564e^-4	0.522	INTRON vib
3R	5709131	3R_5709131_SNP [dm3] 3R_9883409_SNP [dm6]	C	G	1.566e^-4	0.522	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	22879088	3L_22879088_SNP [dm3] 3L_22885988_SNP [dm6]	T	C	1.567e^-4	0.522	INTRON slif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2837091	2L_2837091_SNP [dm3] 2L_2837091_SNP [dm6]	C	T	1.570e^-4	0.522	INTRON CG3119	TF binding site mE1_TFBS_cad
3L	13316128	3L_13316128_SNP [dm3] 3L_13323028_SNP [dm6]	A	G	1.577e^-4	0.522	INTERGENIC
2R	20211866	2R_20211866_SNP [dm3] 2R_24324343_SNP [dm6]	T	A	1.577e^-4	0.522	UPSTREAM CR44810 INTERGENIC
2L	9105472	2L_9105472_SNP [dm3] 2L_9105472_SNP [dm6]	A	T	1.590e^-4	0.522	INTERGENIC
3L	7309218	3L_7309218_SNP [dm3] 3L_7316118_SNP [dm6]	G	A	1.590e^-4	0.522	INTERGENIC
3L	11598736	3L_11598736_SNP [dm3] 3L_11605636_SNP [dm6]	G	A	1.591e^-4	0.522	UTR_3_PRIME CG6091 DOWNSTREAM CG6091 & 1 other
2R	19683084	2R_19683084_SNP [dm3] 2R_23795561_SNP [dm6]	T	C	1.597e^-4	0.522	INTRON CG9850
2L	8448607	2L_8448607_SNP [dm3] 2L_8448607_SNP [dm6]	A	C	1.599e^-4	0.522	SYNONYMOUS_CODING U26
3L	443138	3L_443138_SNP [dm3] 3L_443138_SNP [dm6]	C	T	1.600e^-4	0.522	NON_SYNONYMOUS_CODING klar INTRON klar	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	3768999	3L_3768999_SNP [dm3] 3L_3768999_SNP [dm6]	A	G	1.601e^-4	0.522	INTRON CG32264
2L	20974216	2L_20974216_SNP [dm3] 2L_20974216_SNP [dm6]	A	G	1.603e^-4	0.522	INTRON CG42238
X	6357731	X_6357731_SNP [dm3] X_6463698_SNP [dm6]	A	T	1.603e^-4	0.522	DOWNSTREAM CG42340 INTRON CG42340
2L	2949570	2L_2949570_SNP [dm3] 2L_2949570_SNP [dm6]	T	C	1.603e^-4	0.522	SYNONYMOUS_CODING lilli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17089906	3L_17089906_SNP [dm3] 3L_17096806_SNP [dm6]	C	T	1.610e^-4	0.522	INTRON Rbp6
2R	3665703	2R_3665703_SNP [dm3] 2R_7778198_SNP [dm6]	T	G	1.613e^-4	0.522	INTRON CG30497 & 1 other
3R	21989147	3R_21989147_SNP [dm3] 3R_26163425_SNP [dm6]	T	C	1.615e^-4	0.522	INTERGENIC
2L	8450997	2L_8450997_SNP [dm3] 2L_8450997_SNP [dm6]	T	A	1.625e^-4	0.522	UTR_5_PRIME fu12
2L	17259632	2L_17259632_SNP [dm3] 2L_17259632_SNP [dm6]	G	C	1.627e^-4	0.522	INTRON beat-IIIc
2L	16033713	2L_16033713_INS [dm3] 2L_16033713_INS [dm6]	T	TT	1.628e^-4	0.522	INTRON beat-Ic
2L	8086173	2L_8086173_SNP [dm3] 2L_8086173_SNP [dm6]	T	C	1.636e^-4	0.522	INTRON Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	7117788	3R_7117788_SNP [dm3] 3R_11292066_SNP [dm6]	T	G	1.639e^-4	0.522	INTRON CR31386
3L	9491503	3L_9491503_SNP [dm3] 3L_9498403_SNP [dm6]	T	C	1.639e^-4	0.522	INTRON path
3R	5448700	3R_5448700_SNP [dm3] 3R_9622978_SNP [dm6]	G	T	1.641e^-4	0.522	UTR_5_PRIME CG8312 INTRON CG8312
X	3779272	X_3779272_SNP [dm3] X_3885239_SNP [dm6]	T	C	1.655e^-4	0.522	INTRON CG15239
2R	9955247	2R_9955247_SNP [dm3] 2R_14067742_SNP [dm6]	T	A	1.658e^-4	0.522	INTRON Prosap
2L	8450856	2L_8450856_SNP [dm3] 2L_8450856_SNP [dm6]	A	C	1.661e^-4	0.522	SYNONYMOUS_CODING fu12
3R	14046601	3R_14046601_SNP [dm3] 3R_18220879_SNP [dm6]	C	T	1.662e^-4	0.522	SYNONYMOUS_CODING CG7988 UPSTREAM CG7183 DOWNSTREAM mTerf5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	22649611	3L_22649611_SNP [dm3] 3L_22656511_SNP [dm6]	C	T	1.662e^-4	0.522	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	13483941	3R_13483941_SNP [dm3] 3R_17658219_SNP [dm6]	T	A	1.666e^-4	0.522	DOWNSTREAM tRNA:CR31575 INTRON CG14322
2R	3665694	2R_3665694_SNP [dm3] 2R_7778189_SNP [dm6]	A	G	1.669e^-4	0.522	INTRON CG30497 & 1 other
X	7897466	X_7897466_SNP [dm3] X_8003433_SNP [dm6]	T	C	1.670e^-4	0.522	INTRON Tbh
2R	19504706	2R_19504706_SNP [dm3] 2R_23617183_SNP [dm6]	T	G	1.671e^-4	0.522	UPSTREAM CG17664 INTERGENIC	TF binding site mE1_TFBS_sens
3L	6753223	3L_6753223_SNP [dm3] 3L_6760123_SNP [dm6]	A	T	1.672e^-4	0.522	SYNONYMOUS_CODING CG32392 INTRON CG32392	TF binding site mE1_TFBS_cad
3L	13316115	3L_13316115_SNP [dm3] 3L_13323015_SNP [dm6]	G	A	1.675e^-4	0.522	INTERGENIC
3L	1565411	3L_1565411_SNP [dm3] 3L_1565411_SNP [dm6]	C	T	1.676e^-4	0.522	START_GAINED CG12003 UTR_5_PRIME CG12003 INTRON CG7879	TF binding site mE1_TFBS_sens
2R	4956241	2R_4956241_SNP [dm3] 2R_9068736_SNP [dm6]	T	G	1.677e^-4	0.522	UPSTREAM ana INTRON ana
3R	26805366	3R_26805366_DEL [dm3] 3R_30979644_DEL [dm6]	GG	G	1.679e^-4	0.522	INTRON 5-HT7
3L	4556696	3L_4556696_SNP [dm3] 3L_4556696_SNP [dm6]	T	A	1.679e^-4	0.522	UPSTREAM CG42540 INTRON CG42540
3L	22919731	3L_22919731_SNP [dm3] 3L_22926631_SNP [dm6]	A	C	1.680e^-4	0.522	INTERGENIC
3L	9686313	3L_9686313_SNP [dm3] 3L_9693213_SNP [dm6]	C	A	1.681e^-4	0.522	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
3L	3751699	3L_3751699_DEL [dm3] 3L_3751699_DEL [dm6]	AA	A	1.681e^-4	0.522	INTRON CG32264
3L	17672022	3L_17672022_SNP [dm3] 3L_17678922_SNP [dm6]	C	A	1.686e^-4	0.522	INTRON CG34251
2L	5956262	2L_5956262_SNP [dm3] 2L_5956262_SNP [dm6]	A	G	1.693e^-4	0.522	START_GAINED CG13999 UTR_5_PRIME CG13999 UPSTREAM Vm26Ab DOWNSTREAM CG13998
3R	25727862	3R_25727862_SNP [dm3] 3R_29902140_SNP [dm6]	G	T	1.693e^-4	0.522	INTRON CG31038
3L	13316134	3L_13316134_SNP [dm3] 3L_13323034_SNP [dm6]	C	A	1.696e^-4	0.522	INTERGENIC
3R	15046636	3R_15046636_SNP [dm3] 3R_19220914_SNP [dm6]	C	A	1.697e^-4	0.522	INTRON vib
3L	1734626	3L_1734626_SNP [dm3] 3L_1734626_SNP [dm6]	G	C	1.699e^-4	0.522	SYNONYMOUS_CODING Oseg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10098100	2R_10098100_INS [dm3] 2R_14210595_INS [dm6]	TG	GAC	1.699e^-4	0.522	INTRON Sox15	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	8733519	2L_8733519_SNP [dm3] 2L_8733519_SNP [dm6]	G	A	1.706e^-4	0.523	INTRON raw
3R	7278942	3R_7278942_SNP [dm3] 3R_11453220_SNP [dm6]	A	G	1.707e^-4	0.523	SYNONYMOUS_CODING PGRP-LB INTRON CG17230	TF binding site mE1_TFBS_chinmo
X	13136787	X_13136787_SNP [dm3] X_13242754_SNP [dm6]	C	T	1.709e^-4	0.523	INTRON mew	TF binding site BDTNP1_TFBS_da
3R	20321310	3R_20321310_SNP [dm3] 3R_24495588_SNP [dm6]	C	T	1.715e^-4	0.523	INTERGENIC	TF binding site mE1_TFBS_cad
2R	9356682	2R_9356682_SNP [dm3] 2R_13469177_SNP [dm6]	A	C	1.717e^-4	0.523	INTRON arr	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu
3R	21989095	3R_21989095_SNP [dm3] 3R_26163373_SNP [dm6]	A	G	1.721e^-4	0.523	INTERGENIC
2R	156485	2R_156485_SNP [dm3] 2R_4268980_SNP [dm6]	G	T	1.724e^-4	0.523	INTERGENIC
3L	1734781	3L_1734781_SNP [dm3] 3L_1734781_SNP [dm6]	T	G	1.728e^-4	0.523	SYNONYMOUS_CODING Oseg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25434109	3R_25434109_SNP [dm3] 3R_29608387_SNP [dm6]	G	A	1.728e^-4	0.523	UPSTREAM Diedel2 INTRON alph
X	2698889	X_2698889_SNP [dm3] X_2804856_SNP [dm6]	G	T	1.735e^-4	0.524	INTRON kirre	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10560917	2L_10560917_SNP [dm3] 2L_10560917_SNP [dm6]	A	T	1.737e^-4	0.524	INTRON Trim9
3R	3036781	3R_3036781_SNP [dm3] 3R_7211059_SNP [dm6]	A	T	1.738e^-4	0.524	INTERGENIC
2L	5918420	2L_5918420_SNP [dm3] 2L_5918420_SNP [dm6]	C	T	1.743e^-4	0.524	SYNONYMOUS_CODING bchs
2R	3602425	2R_3602425_SNP [dm3] 2R_7714920_SNP [dm6]	G	T	1.746e^-4	0.524	UPSTREAM CG1946 DOWNSTREAM CG1942 INTERGENIC
2R	17760362	2R_17760362_SNP [dm3] 2R_21872857_SNP [dm6]	C	G	1.752e^-4	0.525	INTRON Fili	TF binding site mE1_TFBS_D mE1_TFBS_sens
3L	9515098	3L_9515098_SNP [dm3] 3L_9521998_SNP [dm6]	A	G	1.755e^-4	0.525	INTRON CG33700
3R	23381450	3R_23381450_SNP [dm3] 3R_27555728_SNP [dm6]	C	G	1.760e^-4	0.526	INTRON Klp98A	TF binding site BDTNP1_TFBS_z
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	1.766e^-4	0.527	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2347806	2L_2347806_SNP [dm3] 2L_2347806_SNP [dm6]	A	T	1.768e^-4	0.527	INTRON CG9967 & 1 other
3R	6271359	3R_6271359_SNP [dm3] 3R_10445637_SNP [dm6]	T	C	1.774e^-4	0.527	INTERGENIC
X	18463732	X_18463732_SNP [dm3] X_18569699_SNP [dm6]	A	G	1.775e^-4	0.527	INTRON Bx	TF binding site BDTNP1_TFBS_da
X	12900896	X_12900896_SNP [dm3] X_13006863_SNP [dm6]	G	T	1.777e^-4	0.527	INTRON rad	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22200488	3L_22200488_INS [dm3] 3L_22207388_INS [dm6]	T	TT	1.787e^-4	0.527	INTRON olf413
3L	8471964	3L_8471964_SNP [dm3] 3L_8478864_SNP [dm6]	G	C	1.792e^-4	0.527	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4313161	3R_4313161_SNP [dm3] 3R_8487439_SNP [dm6]	G	A	1.800e^-4	0.527	INTERGENIC
3L	13317212	3L_13317212_SNP [dm3] 3L_13324112_SNP [dm6]	T	C	1.800e^-4	0.527	DOWNSTREAM CR44558 INTERGENIC
X	13349348	X_13349348_SNP [dm3] X_13455315_SNP [dm6]	T	C	1.804e^-4	0.527	INTRON Neto
3L	11911451	3L_11911451_SNP [dm3] 3L_11918351_SNP [dm6]	T	A	1.805e^-4	0.527	INTRON CG44837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	9105311	2L_9105311_SNP [dm3] 2L_9105311_SNP [dm6]	G	T	1.811e^-4	0.527	INTERGENIC
3R	10914325	3R_10914325_SNP [dm3] 3R_15088603_SNP [dm6]	A	G	1.816e^-4	0.527	INTRON CG6966
2L	20998639	2L_20998639_SNP [dm3] 2L_20998639_SNP [dm6]	C	T	1.816e^-4	0.527	INTRON CG42238	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2L	14551840	2L_14551840_SNP [dm3] 2L_14551840_SNP [dm6]	T	A	1.817e^-4	0.527	UPSTREAM CR44853 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	11103666	3R_11103666_SNP [dm3] 3R_15277944_SNP [dm6]	T	A	1.818e^-4	0.527	DOWNSTREAM l_3_neo43 INTRON MRG15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	19279708	3R_19279708_SNP [dm3] 3R_23453986_SNP [dm6]	G	A	1.819e^-4	0.527	INTRON CG4374
2L	19840675	2L_19840675_SNP [dm3] 2L_19840675_SNP [dm6]	A	G	1.823e^-4	0.527	INTRON sick
3L	18648278	3L_18648278_DEL [dm3] 3L_18655178_DEL [dm6]	AT	A	1.826e^-4	0.527	INTRON MYPT-75D
2R	19337409	2R_19337409_SNP [dm3] 2R_23449886_SNP [dm6]	G	A	1.827e^-4	0.527	INTRON CG43795
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	1.828e^-4	0.527	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1565036	3L_1565036_SNP [dm3] 3L_1565036_SNP [dm6]	C	T	1.829e^-4	0.527	UPSTREAM CG12003 INTRON CG7879	TF binding site mE1_TFBS_sens
X	13026411	X_13026411_INS [dm3] X_13132378_INS [dm6]	T	TTTTT	1.831e^-4	0.527	INTRON MFS10 & 1 other
3R	14323891	3R_14323891_SNP [dm3] 3R_18498169_SNP [dm6]	C	T	1.834e^-4	0.527	INTRON fru
3R	14954365	3R_14954365_DEL [dm3] 3R_19128643_DEL [dm6]	AAATGCAGAAA...	A	1.837e^-4	0.527	INTRON CG6040
2L	19837577	2L_19837577_SNP [dm3] 2L_19837577_SNP [dm6]	G	A	1.837e^-4	0.527	INTRON sick	TF binding site mE1_TFBS_cad
2R	6016861	2R_6016861_SNP [dm3] 2R_10129356_SNP [dm6]	T	G	1.839e^-4	0.527	INTRON gem
3L	10627121	3L_10627121_SNP [dm3] 3L_10634021_SNP [dm6]	C	T	1.852e^-4	0.528	DOWNSTREAM E_z_ & 1 other INTRON CG34001
3L	7257545	3L_7257545_SNP [dm3] 3L_7264445_SNP [dm6]	T	A	1.853e^-4	0.528	UPSTREAM CG14830 INTERGENIC
X	5228715	X_5228715_SNP [dm3] X_5334682_SNP [dm6]	G	A	1.853e^-4	0.528	DOWNSTREAM CanB INTERGENIC
2L	8957202	2L_8957202_SNP [dm3] 2L_8957202_SNP [dm6]	A	T	1.854e^-4	0.528	INTRON CG31886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	15682846	3R_15682846_SNP [dm3] 3R_19857124_SNP [dm6]	G	C	1.855e^-4	0.528	NON_SYNONYMOUS_CODING Ire1	TF binding site mE1_TFBS_cad
2L	5862491	2L_5862491_SNP [dm3] 2L_5862491_SNP [dm6]	C	T	1.868e^-4	0.531	INTRON rau
3R	11322549	3R_11322549_SNP [dm3] 3R_15496827_SNP [dm6]	T	C	1.875e^-4	0.532	INTERGENIC
3L	22187954	3L_22187954_SNP [dm3] 3L_22194854_SNP [dm6]	G	A	1.881e^-4	0.532	INTRON olf413	TF binding site mE1_TFBS_HSA
2R	11483280	2R_11483280_SNP [dm3] 2R_15595775_SNP [dm6]	C	T	1.884e^-4	0.532	INTERGENIC
3R	13682859	3R_13682859_SNP [dm3] 3R_17857137_SNP [dm6]	T	C	1.890e^-4	0.532	INTRON tinc
2L	4512888	2L_4512888_SNP [dm3] 2L_4512888_SNP [dm6]	G	A	1.890e^-4	0.532	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4764291	X_4764291_SNP [dm3] X_4870258_SNP [dm6]	T	C	1.895e^-4	0.532	INTRON CG42594
3L	22965075	3L_22965075_INS [dm3] 3L_22971975_INS [dm6]	A	AC	1.898e^-4	0.532	INTERGENIC
2R	11506455	2R_11506455_INS [dm3] 2R_15618950_INS [dm6]	T	TTA	1.899e^-4	0.532	INTRON CG42524
3L	9716369	3L_9716369_SNP [dm3] 3L_9723269_SNP [dm6]	T	C	1.899e^-4	0.532	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14815037	3L_14815037_SNP [dm3] 3L_14821937_SNP [dm6]	A	C	1.901e^-4	0.532	INTRON CG17839
3R	26871231	3R_26871231_SNP [dm3] 3R_31045509_SNP [dm6]	A	C	1.907e^-4	0.532	UPSTREAM CG33920 INTRON CanA1
3R	5447308	3R_5447308_SNP [dm3] 3R_9621586_SNP [dm6]	G	T	1.909e^-4	0.532	NON_SYNONYMOUS_CODING CG8312	TF binding site mE1_TFBS_cad
2L	19890060	2L_19890060_SNP [dm3] 2L_19890060_SNP [dm6]	T	C	1.911e^-4	0.532	DOWNSTREAM CG10481 INTRON sick
3L	7014398	3L_7014398_SNP [dm3] 3L_7021298_SNP [dm6]	C	G	1.921e^-4	0.533	INTRON Mp
2L	19890126	2L_19890126_SNP [dm3] 2L_19890126_SNP [dm6]	T	G	1.921e^-4	0.533	DOWNSTREAM CG10481 INTRON sick
3L	16202299	3L_16202299_SNP [dm3] 3L_16209199_SNP [dm6]	C	T	1.930e^-4	0.533	INTERGENIC	TF binding site mE1_TFBS_cad
2R	17760464	2R_17760464_SNP [dm3] 2R_21872959_SNP [dm6]	T	C	1.937e^-4	0.533	INTRON Fili	TF binding site mE1_TFBS_D
X	7993142	X_7993142_SNP [dm3] X_8099109_SNP [dm6]	T	A	1.937e^-4	0.533	INTRON CG2258	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11487984	2R_11487984_SNP [dm3] 2R_15600479_SNP [dm6]	G	A	1.938e^-4	0.533	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	8681778	3L_8681778_SNP [dm3] 3L_8688678_SNP [dm6]	A	C	1.940e^-4	0.533	INTERGENIC
3R	24367595	3R_24367595_SNP [dm3] 3R_28541873_SNP [dm6]	G	A	1.946e^-4	0.533	DOWNSTREAM CG12413 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3R	23893336	3R_23893336_SNP [dm3] 3R_28067614_SNP [dm6]	G	A	1.948e^-4	0.533	INTRON CG34362
2R	17120729	2R_17120729_SNP [dm3] 2R_21233224_SNP [dm6]	A	G	1.951e^-4	0.533	INTRON ASPP
2R	18282632	2R_18282632_SNP [dm3] 2R_22395127_SNP [dm6]	T	A	1.952e^-4	0.533	INTRON babos
3R	6752684	3R_6752684_SNP [dm3] 3R_10926962_SNP [dm6]	T	C	1.956e^-4	0.533	INTERGENIC
2L	19940949	2L_19940949_SNP [dm3] 2L_19940949_SNP [dm6]	A	T	1.958e^-4	0.533	INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	457088	3L_457088_SNP [dm3] 3L_457088_SNP [dm6]	G	A	1.960e^-4	0.533	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	12488148	3R_12488148_SNP [dm3] 3R_16662426_SNP [dm6]	C	A	1.962e^-4	0.533	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13026420	X_13026420_SNP [dm3] X_13132387_SNP [dm6]	A	T	1.963e^-4	0.533	INTRON MFS10 & 1 other
2L	9853732	2L_9853732_SNP [dm3] 2L_9853732_SNP [dm6]	A	T	1.964e^-4	0.533	INTRON nAChRalpha6
X	4094376	X_4094376_SNP [dm3] X_4200343_SNP [dm6]	G	A	1.967e^-4	0.533	INTRON Fas2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8796794	2L_8796794_SNP [dm3] 2L_8796794_SNP [dm6]	A	G	1.968e^-4	0.533	INTERGENIC	TF binding site mE1_TFBS_sens
X	13026415	X_13026415_SNP [dm3] X_13132382_SNP [dm6]	A	T	1.976e^-4	0.533	INTRON MFS10 & 1 other
2L	1195504	2L_1195504_SNP [dm3] 2L_1195504_SNP [dm6]	T	A	1.979e^-4	0.533	INTRON CG5001
3L	709492	3L_709492_SNP [dm3] 3L_709492_SNP [dm6]	T	C	1.979e^-4	0.533	SPLICE_SITE_REGION CkIIalpha-i3 SYNONYMOUS_CODING CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3R	10304959	3R_10304959_SNP [dm3] 3R_14479237_SNP [dm6]	G	A	1.979e^-4	0.533	INTRON cv-c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3L	17356599	3L_17356599_SNP [dm3] 3L_17363499_SNP [dm6]	T	C	1.990e^-4	0.535	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr
3L	22075739	3L_22075739_SNP [dm3] 3L_22082639_SNP [dm6]	A	T	1.993e^-4	0.535	UPSTREAM msopa INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13316099	3L_13316099_SNP [dm3] 3L_13322999_SNP [dm6]	A	C	1.994e^-4	0.535	INTERGENIC
3L	14814617	3L_14814617_SNP [dm3] 3L_14821517_SNP [dm6]	C	A	2.006e^-4	0.536	INTRON CG17839
2R	13506075	2R_13506075_SNP [dm3] 2R_17618570_SNP [dm6]	T	G	2.012e^-4	0.536	UPSTREAM CG44403 INTRON CG10936
2L	1147402	2L_1147402_SNP [dm3] 2L_1147402_SNP [dm6]	C	T	2.012e^-4	0.536	UPSTREAM CG4749 DOWNSTREAM MFS3 INTERGENIC
2R	17590895	2R_17590895_SNP [dm3] 2R_21703390_SNP [dm6]	C	T	2.019e^-4	0.536	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3L	14910230	3L_14910230_SNP [dm3] 3L_14917130_SNP [dm6]	C	A	2.030e^-4	0.536	INTRON DCX-EMAP
2R	6669458	2R_6669458_SNP [dm3] 2R_10781953_SNP [dm6]	T	A	2.031e^-4	0.536	UPSTREAM CR44299 INTRON CG33144	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	16185259	2L_16185259_SNP [dm3] 2L_16185259_SNP [dm6]	C	A	2.032e^-4	0.536	SYNONYMOUS_CODING Ca-alpha1D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10282597	3L_10282597_SNP [dm3] 3L_10289497_SNP [dm6]	A	G	2.040e^-4	0.536	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15483280	3L_15483280_SNP [dm3] 3L_15490180_SNP [dm6]	T	C	2.042e^-4	0.536	INTERGENIC
2R	17760427	2R_17760427_DEL [dm3] 2R_21872922_DEL [dm6]	AA	A	2.042e^-4	0.536	INTRON Fili	TF binding site mE1_TFBS_D
2L	8086098	2L_8086098_SNP [dm3] 2L_8086098_SNP [dm6]	C	T	2.049e^-4	0.536	INTRON Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	9257732	2L_9257732_SNP [dm3] 2L_9257732_SNP [dm6]	T	A	2.056e^-4	0.536	INTRON Ggamma30A
X	13026419	X_13026419_SNP [dm3] X_13132386_SNP [dm6]	A	T	2.061e^-4	0.536	INTRON MFS10 & 1 other
X	19011939	X_19011939_SNP [dm3] X_19117906_SNP [dm6]	C	A	2.062e^-4	0.536	INTERGENIC
3L	1735500	3L_1735500_SNP [dm3] 3L_1735500_SNP [dm6]	A	G	2.065e^-4	0.536	SYNONYMOUS_CODING Oseg4 DOWNSTREAM CG18173	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	5980518	2R_5980518_SNP [dm3] 2R_10093013_SNP [dm6]	A	G	2.069e^-4	0.536	INTRON CG2269
2L	2949693	2L_2949693_SNP [dm3] 2L_2949693_SNP [dm6]	A	G	2.076e^-4	0.536	SYNONYMOUS_CODING lilli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11511634	3R_11511634_SNP [dm3] 3R_15685912_SNP [dm6]	T	A	2.076e^-4	0.536	INTRON pxb	TF binding site BDTNP1_TFBS_hb
3L	4841826	3L_4841826_SNP [dm3] 3L_4841826_SNP [dm6]	T	C	2.077e^-4	0.536	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	15325605	2R_15325605_SNP [dm3] 2R_19438100_SNP [dm6]	C	T	2.080e^-4	0.536	SYNONYMOUS_CODING Spt5 UPSTREAM Fak
2L	10730523	2L_10730523_SNP [dm3] 2L_10730523_SNP [dm6]	C	T	2.081e^-4	0.536	SYNONYMOUS_CODING CG17118 DOWNSTREAM CG6443 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11599845	3L_11599845_SNP [dm3] 3L_11606745_SNP [dm6]	T	C	2.081e^-4	0.536	SYNONYMOUS_CODING CG6091
2R	13838146	2R_13838146_SNP [dm3] 2R_17950641_SNP [dm6]	G	T	2.084e^-4	0.536	INTERGENIC
X	13026315	X_13026315_DEL [dm3] X_13132282_DEL [dm6]	TCAATTTAT	T	2.084e^-4	0.536	INTRON MFS10 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	18814859	2L_18814859_SNP [dm3] 2L_18814859_SNP [dm6]	A	G	2.085e^-4	0.536	DOWNSTREAM CG17325 & 1 other INTERGENIC
3L	13488539	3L_13488539_SNP [dm3] 3L_13495439_SNP [dm6]	C	T	2.085e^-4	0.536	UPSTREAM Tgi INTRON Tgi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12806871	2R_12806871_SNP [dm3] 2R_16919366_SNP [dm6]	T	C	2.087e^-4	0.536	INTERGENIC
2L	19834664	2L_19834664_SNP [dm3] 2L_19834664_SNP [dm6]	C	T	2.089e^-4	0.536	INTRON sick
3L	10025688	3L_10025688_SNP [dm3] 3L_10032588_SNP [dm6]	A	T	2.092e^-4	0.536	INTRON dpr6
2R	19553891	2R_19553891_SNP [dm3] 2R_23666368_SNP [dm6]	C	T	2.096e^-4	0.536	UPSTREAM Pde8 INTRON Pde8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12615819	3L_12615819_SNP [dm3] 3L_12622719_SNP [dm6]	G	A	2.097e^-4	0.536	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	2355003	3L_2355003_SNP [dm3] 3L_2355003_SNP [dm6]	A	G	2.101e^-4	0.536	INTERGENIC	TF binding site mE1_TFBS_inv
2R	16421431	2R_16421431_SNP [dm3] 2R_20533926_SNP [dm6]	G	C	2.102e^-4	0.536	UTR_3_PRIME CG30154 UPSTREAM CG18067 DOWNSTREAM CR44651
3R	3045300	3R_3045300_SNP [dm3] 3R_7219578_SNP [dm6]	G	A	2.103e^-4	0.536	START_GAINED CG14605 UTR_5_PRIME CG14605
2L	8582176	2L_8582176_SNP [dm3] 2L_8582176_SNP [dm6]	A	C	2.105e^-4	0.536	INTRON Sema-1a
3L	1727047	3L_1727047_SNP [dm3] 3L_1727047_SNP [dm6]	G	A	2.107e^-4	0.536	INTRON drpr
2L	5883050	2L_5883050_SNP [dm3] 2L_5883050_SNP [dm6]	T	G	2.109e^-4	0.536	UPSTREAM CG44574 INTERGENIC
3L	10627224	3L_10627224_SNP [dm3] 3L_10634124_SNP [dm6]	C	T	2.110e^-4	0.536	SYNONYMOUS_CODING CG34001 DOWNSTREAM E_z_ & 1 other
3R	14063390	3R_14063390_SNP [dm3] 3R_18237668_SNP [dm6]	A	T	2.111e^-4	0.536	INTRON repo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19802392	2L_19802392_SNP [dm3] 2L_19802392_SNP [dm6]	C	T	2.122e^-4	0.538	INTRON sick
2L	5943722	2L_5943722_SNP [dm3] 2L_5943722_SNP [dm6]	C	T	2.125e^-4	0.538	UTR_5_PRIME Gpdh UPSTREAM Gpdh & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
X	3142079	X_3142079_SNP [dm3] X_3248046_SNP [dm6]	A	C	2.129e^-4	0.539	DOWNSTREAM Pig1 INTRON dnc
3L	16202260	3L_16202260_SNP [dm3] 3L_16209160_SNP [dm6]	A	C	2.135e^-4	0.539	INTERGENIC	TF binding site mE1_TFBS_cad
3L	5651486	3L_5651486_SNP [dm3] 3L_5658386_SNP [dm6]	A	G	2.145e^-4	0.541	UTR_5_PRIME sif INTRON sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18198369	3L_18198369_SNP [dm3] 3L_18205269_SNP [dm6]	C	G	2.161e^-4	0.544	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18944951	2L_18944951_SNP [dm3] 2L_18944951_SNP [dm6]	T	C	2.162e^-4	0.544	UPSTREAM ssp3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
X	16871762	X_16871762_SNP [dm3] X_16977729_SNP [dm6]	T	A	2.168e^-4	0.545	INTRON CG45002
2L	8507658	2L_8507658_SNP [dm3] 2L_8507658_SNP [dm6]	G	C	2.176e^-4	0.545	UPSTREAM Dh31 INTERGENIC
3R	5745050	3R_5745050_SNP [dm3] 3R_9919328_SNP [dm6]	G	A	2.178e^-4	0.545	INTRON Glut4EF
2L	6463898	2L_6463898_SNP [dm3] 2L_6463898_SNP [dm6]	A	T	2.182e^-4	0.545	UTR_5_PRIME CG16947	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	18991257	3R_18991257_SNP [dm3] 3R_23165535_SNP [dm6]	T	C	2.183e^-4	0.545	INTERGENIC
2L	19855447	2L_19855447_SNP [dm3] 2L_19855447_SNP [dm6]	A	T	2.189e^-4	0.545	INTRON sick
2R	17892919	2R_17892919_SNP [dm3] 2R_22005414_SNP [dm6]	G	A	2.189e^-4	0.545	INTRON CG34370
2L	9104792	2L_9104792_SNP [dm3] 2L_9104792_SNP [dm6]	A	G	2.198e^-4	0.545	INTERGENIC
3R	13600041	3R_13600041_SNP [dm3] 3R_17774319_SNP [dm6]	C	T	2.201e^-4	0.545	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3R	5143723	3R_5143723_SNP [dm3] 3R_9318001_SNP [dm6]	A	C	2.202e^-4	0.545	INTRON CG8861
X	7613485	X_7613485_SNP [dm3] X_7719452_SNP [dm6]	G	A	2.206e^-4	0.545	INTERGENIC
3R	5805995	3R_5805995_SNP [dm3] 3R_9980273_SNP [dm6]	T	C	2.210e^-4	0.545	INTRON Glut4EF
3L	11708590	3L_11708590_SNP [dm3] 3L_11715490_SNP [dm6]	G	A	2.212e^-4	0.545	UPSTREAM CG14132 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	9104742	2L_9104742_DEL [dm3] 2L_9104742_DEL [dm6]	CTA	C	2.212e^-4	0.545	INTERGENIC
3L	22052650	3L_22052650_SNP [dm3] 3L_22059550_SNP [dm6]	G	T	2.216e^-4	0.545	INTRON Oct-TyrR
X	18386875	X_18386875_SNP [dm3] X_18492842_SNP [dm6]	C	T	2.219e^-4	0.545	UPSTREAM CG15044 DOWNSTREAM CG15043 INTERGENIC
2R	10345222	2R_10345222_INS [dm3] 2R_14457717_INS [dm6]	T	TCTCTGGAAAACTT...	2.220e^-4	0.545	UPSTREAM Oaz INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	17894354	2R_17894354_SNP [dm3] 2R_22006849_SNP [dm6]	A	G	2.222e^-4	0.545	INTRON CG34370
X	14042378	X_14042378_SNP [dm3] X_14148345_SNP [dm6]	T	G	2.222e^-4	0.545	INTERGENIC
2R	16340634	2R_16340634_SNP [dm3] 2R_20453129_SNP [dm6]	A	G	2.223e^-4	0.545	INTRON CG12484
3L	708105	3L_708105_SNP [dm3] 3L_708105_SNP [dm6]	T	C	2.230e^-4	0.545	UTR_5_PRIME CG13895 DOWNSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	8957220	2L_8957220_INS [dm3] 2L_8957220_INS [dm6]	A	ACATA	2.232e^-4	0.545	INTRON CG31886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7622632	X_7622632_SNP [dm3] X_7728599_SNP [dm6]	A	G	2.237e^-4	0.545	UPSTREAM CG12155 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13487564	3L_13487564_SNP [dm3] 3L_13494464_SNP [dm6]	G	T	2.238e^-4	0.545	INTRON Tgi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	14135498	3L_14135498_SNP [dm3] 3L_14142398_SNP [dm6]	C	T	2.243e^-4	0.545	INTERGENIC	regulatory region REDfly_CRMs
3R	11265027	3R_11265027_SNP [dm3] 3R_15439305_SNP [dm6]	A	T	2.243e^-4	0.545	UPSTREAM Act88F INTERGENIC	regulatory region REDfly_CRMs
3L	12411295	3L_12411295_SNP [dm3] 3L_12418195_SNP [dm6]	A	C	2.246e^-4	0.545	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
3L	781261	3L_781261_SNP [dm3] 3L_781261_SNP [dm6]	G	T	2.247e^-4	0.545	INTERGENIC
2L	1479197	2L_1479197_SNP [dm3] 2L_1479197_SNP [dm6]	C	T	2.253e^-4	0.545	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17103452	3L_17103452_SNP [dm3] 3L_17110352_SNP [dm6]	T	C	2.253e^-4	0.545	INTRON Rbp6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21330598	3R_21330598_SNP [dm3] 3R_25504876_SNP [dm6]	A	C	2.260e^-4	0.545	UPSTREAM CG5107 DOWNSTREAM CR45651 INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7013407	3L_7013407_SNP [dm3] 3L_7020307_SNP [dm6]	A	T	2.263e^-4	0.545	INTRON Mp
X	3933944	X_3933944_DEL [dm3] X_4039911_DEL [dm6]	TAATAAAATCCTTCTT...	T	2.264e^-4	0.545	INTERGENIC
2L	5943628	2L_5943628_SNP [dm3] 2L_5943628_SNP [dm6]	C	A	2.279e^-4	0.545	UPSTREAM Gpdh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_kn mE1_TFBS_Trl
2L	19830675	2L_19830675_SNP [dm3] 2L_19830675_SNP [dm6]	G	C	2.280e^-4	0.545	INTRON sick
3R	16987139	3R_16987139_DEL [dm3] 3R_21161417_DEL [dm6]	TACGA	T	2.280e^-4	0.545	UPSTREAM CG10824 INTRON SNF4Agamma
3R	16987147	3R_16987147_SNP [dm3] 3R_21161425_SNP [dm6]	A	G	2.280e^-4	0.545	UPSTREAM CG10824 INTRON SNF4Agamma
3R	20943264	3R_20943264_SNP [dm3] 3R_25117542_SNP [dm6]	C	T	2.280e^-4	0.545	UTR_3_PRIME CG31510 INTRON CG31108
3R	3046596	3R_3046596_SNP [dm3] 3R_7220874_SNP [dm6]	T	C	2.281e^-4	0.545	INTERGENIC
2R	4956302	2R_4956302_SNP [dm3] 2R_9068797_SNP [dm6]	C	T	2.291e^-4	0.546	UPSTREAM ana INTRON ana
3R	13926748	3R_13926748_SNP [dm3] 3R_18101026_SNP [dm6]	G	T	2.293e^-4	0.546	INTRON sr
2L	5519040	2L_5519040_SNP [dm3] 2L_5519040_SNP [dm6]	G	C	2.296e^-4	0.546	SYNONYMOUS_CODING CG7382 DOWNSTREAM CG14020	TF binding site BDTNP1_TFBS_hb mE1_TFBS_sens
3R	1264892	3R_1264892_SNP [dm3] 3R_5439170_SNP [dm6]	A	G	2.299e^-4	0.546	INTRON CG14669	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
2L	19798565	2L_19798565_SNP [dm3] 2L_19798565_SNP [dm6]	T	G	2.302e^-4	0.546	INTRON sick
3L	9513567	3L_9513567_SNP [dm3] 3L_9520467_SNP [dm6]	T	A	2.302e^-4	0.546	INTRON CG33700
X	13023346	X_13023346_SNP [dm3] X_13129313_SNP [dm6]	T	C	2.306e^-4	0.547	NON_SYNONYMOUS_CODING CG15717 UTR_5_PRIME MFS10 UPSTREAM snmRNA:204 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21989124	3R_21989124_SNP [dm3] 3R_26163402_SNP [dm6]	T	C	2.309e^-4	0.547	INTERGENIC
2L	17289734	2L_17289734_SNP [dm3] 2L_17289734_SNP [dm6]	G	C	2.321e^-4	0.549	INTERGENIC
X	19572481	X_19572481_SNP [dm3] X_19678448_SNP [dm6]	A	G	2.326e^-4	0.549	SYNONYMOUS_CODING dome	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5447210	3R_5447210_SNP [dm3] 3R_9621488_SNP [dm6]	A	T	2.327e^-4	0.549	INTRON CG8312	TF binding site mE1_TFBS_cad
2R	17727641	2R_17727641_SNP [dm3] 2R_21840136_SNP [dm6]	T	C	2.338e^-4	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10997410	2R_10997410_SNP [dm3] 2R_15109905_SNP [dm6]	T	A	2.338e^-4	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	939164	2L_939164_SNP [dm3] 2L_939164_SNP [dm6]	T	C	2.339e^-4	0.549	INTRON CG4341	TF binding site mE1_TFBS_chinmo
3R	25974815	3R_25974815_SNP [dm3] 3R_30149093_SNP [dm6]	T	A	2.350e^-4	0.551	INTRON AdoR
2L	17858071	2L_17858071_SNP [dm3] 2L_17858071_SNP [dm6]	T	C	2.373e^-4	0.555	INTRON CadN2
3L	5241378	3L_5241378_SNP [dm3] 3L_5248278_SNP [dm6]	G	C	2.377e^-4	0.555	UTR_5_PRIME shep INTRON shep	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	13486721	3L_13486721_SNP [dm3] 3L_13493621_SNP [dm6]	C	G	2.383e^-4	0.555	INTRON Tgi
3L	10265312	3L_10265312_SNP [dm3] 3L_10272212_SNP [dm6]	G	A	2.385e^-4	0.555	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	1734793	3L_1734793_SNP [dm3] 3L_1734793_SNP [dm6]	C	T	2.385e^-4	0.555	SYNONYMOUS_CODING Oseg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12055408	3L_12055408_SNP [dm3] 3L_12062308_SNP [dm6]	G	A	2.386e^-4	0.555	INTRON rols	TF binding site BDTNP1_TFBS_da
2R	13638120	2R_13638120_SNP [dm3] 2R_17750615_SNP [dm6]	T	C	2.388e^-4	0.555	DOWNSTREAM CG10931 INTRON CG5002	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	4950454	2R_4950454_SNP [dm3] 2R_9062949_SNP [dm6]	G	A	2.396e^-4	0.556	INTRON ana	regulatory region REDfly_CRMs
2R	8366265	2R_8366265_SNP [dm3] 2R_12478760_SNP [dm6]	A	C	2.398e^-4	0.556	INTRON Dh44-R2
3R	5959569	3R_5959569_SNP [dm3] 3R_10133847_SNP [dm6]	G	T	2.400e^-4	0.556	INTRON tws	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	22213922	3L_22213922_SNP [dm3] 3L_22220822_SNP [dm6]	C	T	2.402e^-4	0.556	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26320320	3R_26320320_SNP [dm3] 3R_30494598_SNP [dm6]	C	T	2.408e^-4	0.556	INTRON PH4alphaMP
3L	2947923	3L_2947923_SNP [dm3] 3L_2947923_SNP [dm6]	C	T	2.409e^-4	0.556	SYNONYMOUS_CODING Shab
2L	8507668	2L_8507668_SNP [dm3] 2L_8507668_SNP [dm6]	G	C	2.417e^-4	0.556	UPSTREAM Dh31 INTERGENIC
2L	19816601	2L_19816601_SNP [dm3] 2L_19816601_SNP [dm6]	G	T	2.424e^-4	0.556	UPSTREAM snRNA:U2:38ABa DOWNSTREAM snRNA:U5:38ABb INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	5446482	3R_5446482_SNP [dm3] 3R_9620760_SNP [dm6]	A	T	2.428e^-4	0.556	INTRON CG8312
3L	1796051	3L_1796051_SNP [dm3] 3L_1796051_SNP [dm6]	C	T	2.435e^-4	0.556	UPSTREAM alpha-Spec & 1 other INTRON Cdc37	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_sens
2R	17760433	2R_17760433_SNP [dm3] 2R_21872928_SNP [dm6]	A	T	2.436e^-4	0.556	INTRON Fili	TF binding site mE1_TFBS_D
2L	8737937	2L_8737937_INS [dm3] 2L_8737937_INS [dm6]	T	TTT	2.440e^-4	0.556	INTRON raw
2L	19799018	2L_19799018_SNP [dm3] 2L_19799018_SNP [dm6]	C	T	2.450e^-4	0.556	INTRON sick
X	7622443	X_7622443_SNP [dm3] X_7728410_SNP [dm6]	G	A	2.453e^-4	0.556	UPSTREAM CG12155 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	11483203	2R_11483203_SNP [dm3] 2R_15595698_SNP [dm6]	G	T	2.453e^-4	0.556	INTERGENIC
3L	8461269	3L_8461269_SNP [dm3] 3L_8468169_SNP [dm6]	G	A	2.455e^-4	0.556	SYNONYMOUS_CODING Gug	TF binding site mE1_TFBS_cad
2R	11483165	2R_11483165_SNP [dm3] 2R_15595660_SNP [dm6]	C	A	2.459e^-4	0.556	INTERGENIC
3L	17089087	3L_17089087_INS [dm3] 3L_17095987_INS [dm6]	A	AGATCT	2.459e^-4	0.556	INTRON Rbp6
3R	19279698	3R_19279698_SNP [dm3] 3R_23453976_SNP [dm6]	A	C	2.467e^-4	0.556	INTRON CG4374
2L	8377045	2L_8377045_SNP [dm3] 2L_8377045_SNP [dm6]	T	C	2.469e^-4	0.556	UTR_5_PRIME CG17294 UPSTREAM CG13390	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9105664	2L_9105664_SNP [dm3] 2L_9105664_SNP [dm6]	G	A	2.470e^-4	0.556	INTERGENIC
3R	15134572	3R_15134572_SNP [dm3] 3R_19308850_SNP [dm6]	C	T	2.475e^-4	0.556	INTRON Dl
3L	10408076	3L_10408076_SNP [dm3] 3L_10414976_SNP [dm6]	C	A	2.476e^-4	0.556	DOWNSTREAM CG12362 INTERGENIC
2L	8448217	2L_8448217_SNP [dm3] 2L_8448217_SNP [dm6]	T	C	2.480e^-4	0.556	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA
X	13828577	X_13828577_INS [dm3] X_13934544_INS [dm6]	A	AA	2.480e^-4	0.556	INTRON mamo	TF binding site mE1_TFBS_HSA
3L	12615760	3L_12615760_SNP [dm3] 3L_12622660_SNP [dm6]	G	A	2.487e^-4	0.556	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25570319	3R_25570319_SNP [dm3] 3R_29744597_SNP [dm6]	A	G	2.488e^-4	0.556	SYNONYMOUS_CODING CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8741281	2L_8741281_SNP [dm3] 2L_8741281_SNP [dm6]	G	T	2.490e^-4	0.556	UPSTREAM raw INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_kn
2L	17385947	2L_17385947_SNP [dm3] 2L_17385947_SNP [dm6]	A	C	2.491e^-4	0.556	UPSTREAM CLIP-190 INTRON CLIP-190	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19308098	2R_19308098_SNP [dm3] 2R_23420575_SNP [dm6]	A	G	2.492e^-4	0.556	UPSTREAM CG9812 DOWNSTREAM CG9815 INTERGENIC
3R	10805466	3R_10805466_SNP [dm3] 3R_14979744_SNP [dm6]	G	C	2.494e^-4	0.556	INTERGENIC
3L	10722278	3L_10722278_SNP [dm3] 3L_10729178_SNP [dm6]	C	A	2.496e^-4	0.556	INTERGENIC
3R	27277992	3R_27277992_SNP [dm3] 3R_31452270_SNP [dm6]	G	C	2.497e^-4	0.556	INTRON Gprk2	TF binding site mE1_TFBS_cad
2L	9631216	2L_9631216_SNP [dm3] 2L_9631216_SNP [dm6]	C	T	2.498e^-4	0.556	INTERGENIC
3L	3872317	3L_3872317_DEL [dm3] 3L_3872317_DEL [dm6]	AACTACGAGTCTTTTTTCAG...	A	2.500e^-4	0.556	INTERGENIC
X	14224366	X_14224366_SNP [dm3] X_14330333_SNP [dm6]	A	G	2.503e^-4	0.556	INTRON dpr8
3L	13316141	3L_13316141_SNP [dm3] 3L_13323041_SNP [dm6]	T	C	2.504e^-4	0.556	INTERGENIC
2L	8216443	2L_8216443_SNP [dm3] 2L_8216443_SNP [dm6]	C	A	2.518e^-4	0.556	SYNONYMOUS_CODING CG8349 DOWNSTREAM CG8292
3R	20586692	3R_20586692_SNP [dm3] 3R_24760970_SNP [dm6]	G	C	2.523e^-4	0.556	UTR_3_PRIME AstA DOWNSTREAM asp	TF binding site mE1_TFBS_cad
3L	12615763	3L_12615763_SNP [dm3] 3L_12622663_SNP [dm6]	T	C	2.529e^-4	0.556	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	6723366	2R_6723366_DEL [dm3] 2R_10835861_DEL [dm6]	CAGCGATGGGG...	C	2.532e^-4	0.556	UPSTREAM CG12344 DOWNSTREAM CG7686 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26772805	3R_26772805_SNP [dm3] 3R_30947083_SNP [dm6]	T	A	2.538e^-4	0.556	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	709494	3L_709494_SNP [dm3] 3L_709494_SNP [dm6]	G	T	2.541e^-4	0.556	NON_SYNONYMOUS_CODING CkIIalpha-i3 SPLICE_SITE_REGION CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
2R	3602713	2R_3602713_SNP [dm3] 2R_7715208_SNP [dm6]	C	T	2.545e^-4	0.556	INTRON CG1946
3R	14950831	3R_14950831_SNP [dm3] 3R_19125109_SNP [dm6]	A	G	2.545e^-4	0.556	SYNONYMOUS_CODING CG6040	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26772804	3R_26772804_SNP [dm3] 3R_30947082_SNP [dm6]	T	A	2.546e^-4	0.556	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	4953988	2R_4953988_SNP [dm3] 2R_9066483_SNP [dm6]	T	C	2.549e^-4	0.556	INTRON ana	regulatory region REDfly_CRMs
X	17952258	X_17952258_SNP [dm3] X_18058225_SNP [dm6]	C	A	2.553e^-4	0.556	INTRON Sh
2R	17889189	2R_17889189_SNP [dm3] 2R_22001684_SNP [dm6]	C	G	2.561e^-4	0.556	INTRON CG34370
3R	5137887	3R_5137887_SNP [dm3] 3R_9312165_SNP [dm6]	A	G	2.567e^-4	0.556	INTRON CG8861
3R	17353856	3R_17353856_SNP [dm3] 3R_21528134_SNP [dm6]	C	T	2.568e^-4	0.556	UTR_3_PRIME CG7956 DOWNSTREAM CG7956	TF binding site BDTNP1_TFBS_slp1
3L	10722068	3L_10722068_SNP [dm3] 3L_10728968_SNP [dm6]	T	C	2.571e^-4	0.556	INTERGENIC
3R	12994019	3R_12994019_SNP [dm3] 3R_17168297_SNP [dm6]	C	T	2.571e^-4	0.556	INTRON Mur89F
3L	22850443	3L_22850443_SNP [dm3] 3L_22857343_SNP [dm6]	A	C	2.573e^-4	0.556	INTERGENIC
3L	712810	3L_712810_SNP [dm3] 3L_712810_SNP [dm6]	T	C	2.574e^-4	0.556	UPSTREAM CG13896 INTERGENIC	TF binding site mE1_TFBS_sens
X	5809623	X_5809623_SNP [dm3] X_5915590_SNP [dm6]	T	C	2.582e^-4	0.556	UPSTREAM CG3011 DOWNSTREAM CR44108 INTRON CG3011
3L	17623578	3L_17623578_SNP [dm3] 3L_17630478_SNP [dm6]	C	T	2.583e^-4	0.556	UTR_3_PRIME CG7510 UPSTREAM CR44566
X	5228773	X_5228773_SNP [dm3] X_5334740_SNP [dm6]	C	T	2.592e^-4	0.556	DOWNSTREAM CanB INTERGENIC
3R	22236025	3R_22236025_SNP [dm3] 3R_26410303_SNP [dm6]	T	C	2.595e^-4	0.556	INTERGENIC
3R	14177503	3R_14177503_SNP [dm3] 3R_18351781_SNP [dm6]	G	T	2.595e^-4	0.556	INTRON CG15803
2R	12550294	2R_12550294_DEL [dm3] 2R_16662789_DEL [dm6]	TT	T	2.601e^-4	0.556	INTRON Picot
2L	19941325	2L_19941325_SNP [dm3] 2L_19941325_SNP [dm6]	C	T	2.618e^-4	0.556	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3L	7257559	3L_7257559_SNP [dm3] 3L_7264459_SNP [dm6]	G	A	2.622e^-4	0.556	UPSTREAM CG14830 INTERGENIC
3L	7309128	3L_7309128_SNP [dm3] 3L_7316028_SNP [dm6]	G	T	2.622e^-4	0.556	INTERGENIC	insulator Insulator_Class_II.mE01
3L	7309138	3L_7309138_SNP [dm3] 3L_7316038_SNP [dm6]	G	A	2.622e^-4	0.556	INTERGENIC
X	2310890	X_2310890_SNP [dm3] X_2416857_SNP [dm6]	C	G	2.623e^-4	0.556	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	14184655	2R_14184655_SNP [dm3] 2R_18297150_SNP [dm6]	G	A	2.623e^-4	0.556	UPSTREAM CG18539 DOWNSTREAM CG18537 INTRON sbb & 1 other
2R	20211873	2R_20211873_SNP [dm3] 2R_24324350_SNP [dm6]	G	A	2.626e^-4	0.556	UPSTREAM CR44810 INTERGENIC
2R	11578481	2R_11578481_SNP [dm3] 2R_15690976_SNP [dm6]	T	C	2.628e^-4	0.556	UTR_3_PRIME CG30090 UPSTREAM CG30088 DOWNSTREAM CR44372
3L	7479852	3L_7479852_SNP [dm3] 3L_7486752_SNP [dm6]	T	G	2.629e^-4	0.556	INTRON mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19826798	2L_19826798_SNP [dm3] 2L_19826798_SNP [dm6]	G	C	2.629e^-4	0.556	UTR_5_PRIME sick UPSTREAM sick INTRON sick
2R	8133288	2R_8133288_SNP [dm3] 2R_12245783_SNP [dm6]	C	G	2.632e^-4	0.556	DOWNSTREAM CR44315 INTERGENIC
2L	19802476	2L_19802476_SNP [dm3] 2L_19802476_SNP [dm6]	G	A	2.633e^-4	0.556	INTRON sick
2R	19308104	2R_19308104_SNP [dm3] 2R_23420581_SNP [dm6]	C	A	2.634e^-4	0.556	UPSTREAM CG9812 DOWNSTREAM CG9815 INTERGENIC
3L	4290259	3L_4290259_SNP [dm3] 3L_4290259_SNP [dm6]	C	T	2.637e^-4	0.556	SYNONYMOUS_CODING Hexo1 DOWNSTREAM CG15012	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	10436941	3R_10436941_SNP [dm3] 3R_14611219_SNP [dm6]	G	C	2.640e^-4	0.556	INTRON CG14853
3R	5129982	3R_5129982_SNP [dm3] 3R_9304260_SNP [dm6]	C	G	2.643e^-4	0.556	INTRON CG8861
X	13828581	X_13828581_SNP [dm3] X_13934548_SNP [dm6]	C	A	2.643e^-4	0.556	INTRON mamo	TF binding site mE1_TFBS_HSA
2R	15743118	2R_15743118_SNP [dm3] 2R_19855613_SNP [dm6]	T	C	2.646e^-4	0.556	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18769488	2R_18769488_SNP [dm3] 2R_22881965_SNP [dm6]	G	A	2.651e^-4	0.556	DOWNSTREAM PIP5K59B & 1 other INTRON CG3501	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14712078	3R_14712078_SNP [dm3] 3R_18886356_SNP [dm6]	C	A	2.653e^-4	0.556	INTERGENIC
3L	1151921	3L_1151921_SNP [dm3] 3L_1151921_SNP [dm6]	T	G	2.656e^-4	0.556	INTRON bab2
3L	4639377	3L_4639377_SNP [dm3] 3L_4639377_SNP [dm6]	G	T	2.662e^-4	0.556	INTRON axo
3R	21405169	3R_21405169_SNP [dm3] 3R_25579447_SNP [dm6]	C	T	2.667e^-4	0.556	INTRON msi
2L	1754842	2L_1754842_SNP [dm3] 2L_1754842_SNP [dm6]	A	G	2.670e^-4	0.556	DOWNSTREAM Gr22f INTERGENIC
3L	10025690	3L_10025690_DEL [dm3] 3L_10032590_DEL [dm6]	TCAAACGTGATATGAAATAT...	A	2.673e^-4	0.556	INTRON dpr6
3L	11149164	3L_11149164_SNP [dm3] 3L_11156064_SNP [dm6]	T	C	2.674e^-4	0.556	INTRON CG32082	TF binding site BDTNP1_TFBS_twi
3L	11149207	3L_11149207_SNP [dm3] 3L_11156107_SNP [dm6]	T	A	2.674e^-4	0.556	INTRON CG32082	TF binding site BDTNP1_TFBS_twi
3R	16987282	3R_16987282_SNP [dm3] 3R_21161560_SNP [dm6]	A	G	2.674e^-4	0.556	UPSTREAM CG10824 INTRON SNF4Agamma
2L	21340739	2L_21340739_DEL [dm3] 2L_21340739_DEL [dm6]	CTTCTAA	C	2.675e^-4	0.556	UTR_3_PRIME dimm DOWNSTREAM dimm
2L	17327630	2L_17327630_SNP [dm3] 2L_17327630_SNP [dm6]	C	G	2.684e^-4	0.556	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13600157	3R_13600157_SNP [dm3] 3R_17774435_SNP [dm6]	T	G	2.698e^-4	0.556	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
2L	15649286	2L_15649286_SNP [dm3] 2L_15649286_SNP [dm6]	A	G	2.699e^-4	0.556	SYNONYMOUS_CODING CG4587
3R	25672030	3R_25672030_SNP [dm3] 3R_29846308_SNP [dm6]	T	C	2.701e^-4	0.556	INTRON Cad99C
3R	22242649	3R_22242649_SNP [dm3] 3R_26416927_SNP [dm6]	A	G	2.702e^-4	0.556	DOWNSTREAM CG5432 INTERGENIC
3L	18117549	3L_18117549_SNP [dm3] 3L_18124449_SNP [dm6]	C	G	2.704e^-4	0.556	INTERGENIC
3L	3768804	3L_3768804_SNP [dm3] 3L_3768804_SNP [dm6]	A	C	2.705e^-4	0.556	INTRON CG32264	TF binding site BDTNP1_TFBS_dl
3L	10722287	3L_10722287_SNP [dm3] 3L_10729187_SNP [dm6]	T	C	2.705e^-4	0.556	INTERGENIC
2R	17590878	2R_17590878_SNP [dm3] 2R_21703373_SNP [dm6]	T	C	2.706e^-4	0.556	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3L	1321897	3L_1321897_DEL [dm3] 3L_1321897_DEL [dm6]	TAGAACGCATGC...	T	2.706e^-4	0.556	UTR_3_PRIME CG9184 DOWNSTREAM CR45166 INTRON Myo61F	TF binding site mE1_TFBS_cad
2L	2837077	2L_2837077_SNP [dm3] 2L_2837077_SNP [dm6]	C	A	2.706e^-4	0.556	INTRON CG3119	TF binding site mE1_TFBS_cad
X	2703387	X_2703387_SNP [dm3] X_2809354_SNP [dm6]	C	A	2.708e^-4	0.556	UPSTREAM CG12498 INTRON kirre
2L	10560973	2L_10560973_DEL [dm3] 2L_10560973_DEL [dm6]	GTCCTAATTTGTTTATACA...	G	2.708e^-4	0.556	INTRON Trim9
2R	16053170	2R_16053170_SNP [dm3] 2R_20165665_SNP [dm6]	T	C	2.721e^-4	0.556	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	5138023	3R_5138023_SNP [dm3] 3R_9312301_SNP [dm6]	T	G	2.722e^-4	0.556	INTRON CG8861	TF binding site BDTNP1_TFBS_twi
3R	4608440	3R_4608440_SNP [dm3] 3R_8782718_SNP [dm6]	G	A	2.722e^-4	0.556	SYNONYMOUS_CODING Pif1A UTR_5_PRIME Pif1B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19816328	2L_19816328_SNP [dm3] 2L_19816328_SNP [dm6]	T	C	2.723e^-4	0.556	UPSTREAM snRNA:U5:38ABb & 1 other INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26844488	3R_26844488_SNP [dm3] 3R_31018766_SNP [dm6]	G	T	2.724e^-4	0.556	INTERGENIC
3L	1743560	3L_1743560_SNP [dm3] 3L_1743560_SNP [dm6]	G	A	2.726e^-4	0.556	SYNONYMOUS_CODING Gk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25416399	3R_25416399_DEL [dm3] 3R_29590677_DEL [dm6]	TCCTC	T	2.727e^-4	0.556	FRAME_SHIFT CG31041 UPSTREAM CG11470	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1731975	3L_1731975_SNP [dm3] 3L_1731975_SNP [dm6]	C	T	2.730e^-4	0.556	SYNONYMOUS_CODING Oseg4 UPSTREAM drpr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6714513	3L_6714513_SNP [dm3] 3L_6721413_SNP [dm6]	G	A	2.730e^-4	0.556	INTERGENIC
3L	1567838	3L_1567838_SNP [dm3] 3L_1567838_SNP [dm6]	T	C	2.736e^-4	0.556	DOWNSTREAM CG12003 INTRON CG7879	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3R	10813892	3R_10813892_SNP [dm3] 3R_14988170_SNP [dm6]	A	G	2.738e^-4	0.556	INTERGENIC
3R	25405876	3R_25405876_SNP [dm3] 3R_29580154_SNP [dm6]	A	G	2.741e^-4	0.556	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	7867165	X_7867165_SNP [dm3] X_7973132_SNP [dm6]	A	T	2.743e^-4	0.556	INTRON sn	TF binding site mE1_TFBS_HSA
3R	26669557	3R_26669557_SNP [dm3] 3R_30843835_SNP [dm6]	G	C	2.748e^-4	0.556	INTERGENIC
2L	14689608	2L_14689608_SNP [dm3] 2L_14689608_SNP [dm6]	A	G	2.750e^-4	0.556	UPSTREAM osp INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	7893910	X_7893910_SNP [dm3] X_7999877_SNP [dm6]	T	C	2.751e^-4	0.556	INTRON Tbh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23285738	3R_23285738_SNP [dm3] 3R_27460016_SNP [dm6]	T	A	2.761e^-4	0.556	INTERGENIC
3L	11584053	3L_11584053_SNP [dm3] 3L_11590953_SNP [dm6]	T	C	2.762e^-4	0.556	SYNONYMOUS_CODING CG33268 DOWNSTREAM CG7377
3L	8127805	3L_8127805_SNP [dm3] 3L_8134705_SNP [dm6]	G	T	2.766e^-4	0.556	NON_SYNONYMOUS_CODING CG7504
2R	16242822	2R_16242822_SNP [dm3] 2R_20355317_SNP [dm6]	G	T	2.767e^-4	0.556	UPSTREAM CG11192 INTERGENIC	TF binding site mE1_TFBS_cad
2L	7934932	2L_7934932_SNP [dm3] 2L_7934932_SNP [dm6]	A	C	2.773e^-4	0.556	INTRON Snoo
2L	6329201	2L_6329201_SNP [dm3] 2L_6329201_SNP [dm6]	G	A	2.774e^-4	0.556	SYNONYMOUS_CODING PDZ-GEF	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13854579	3R_13854579_SNP [dm3] 3R_18028857_SNP [dm6]	C	T	2.775e^-4	0.556	INTERGENIC
X	17952263	X_17952263_SNP [dm3] X_18058230_SNP [dm6]	A	G	2.785e^-4	0.556	INTRON Sh
2L	19798997	2L_19798997_SNP [dm3] 2L_19798997_SNP [dm6]	T	A	2.790e^-4	0.556	INTRON sick
2L	7992010	2L_7992010_SNP [dm3] 2L_7992010_SNP [dm6]	A	G	2.791e^-4	0.556	UPSTREAM pes INTRON pes	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	15483209	3L_15483209_SNP [dm3] 3L_15490109_SNP [dm6]	A	G	2.795e^-4	0.556	INTERGENIC
3R	20432926	3R_20432926_SNP [dm3] 3R_24607204_SNP [dm6]	G	T	2.797e^-4	0.556	INTRON mld
3L	13316122	3L_13316122_SNP [dm3] 3L_13323022_SNP [dm6]	A	T	2.811e^-4	0.556	INTERGENIC
3R	9817339	3R_9817339_SNP [dm3] 3R_13991617_SNP [dm6]	A	T	2.816e^-4	0.556	INTRON rdx
3L	22027399	3L_22027399_SNP [dm3] 3L_22034299_SNP [dm6]	T	A	2.819e^-4	0.556	UPSTREAM Oct-TyrR INTERGENIC
2L	8086305	2L_8086305_SNP [dm3] 2L_8086305_SNP [dm6]	G	C	2.821e^-4	0.556	INTRON Bsg	TF binding site BDTNP1_TFBS_dl
2L	2837093	2L_2837093_SNP [dm3] 2L_2837093_SNP [dm6]	C	T	2.821e^-4	0.556	INTRON CG3119	TF binding site mE1_TFBS_cad
2L	9431224	2L_9431224_SNP [dm3] 2L_9431224_SNP [dm6]	A	C	2.825e^-4	0.556	UPSTREAM scat & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24019795	3R_24019795_SNP [dm3] 3R_28194073_SNP [dm6]	G	A	2.830e^-4	0.556	INTRON CG34354
2L	5883886	2L_5883886_SNP [dm3] 2L_5883886_SNP [dm6]	T	C	2.833e^-4	0.556	SYNONYMOUS_CODING CG44574 DOWNSTREAM Sfp26Ac
2L	14686016	2L_14686016_SNP [dm3] 2L_14686016_SNP [dm6]	A	G	2.838e^-4	0.556	INTRON osp
2L	10730526	2L_10730526_SNP [dm3] 2L_10730526_SNP [dm6]	A	G	2.839e^-4	0.556	SYNONYMOUS_CODING CG17118 DOWNSTREAM CG6443 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14046462	3R_14046462_SNP [dm3] 3R_18220740_SNP [dm6]	C	A	2.842e^-4	0.556	UPSTREAM CG7183 DOWNSTREAM mTerf5 INTRON CG7988	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	15641205	3L_15641205_SNP [dm3] 3L_15648105_SNP [dm6]	C	A	2.842e^-4	0.556	UPSTREAM CG43083 & 1 other INTERGENIC
3L	441402	3L_441402_SNP [dm3] 3L_441402_SNP [dm6]	C	G	2.842e^-4	0.556	UPSTREAM klar INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_Trl
X	1192856	X_1192856_SNP [dm3] X_1298823_SNP [dm6]	G	A	2.844e^-4	0.556	UPSTREAM CG32811 INTRON DAAM	TF binding site mE1_TFBS_chinmo
3L	13620479	3L_13620479_SNP [dm3] 3L_13627379_SNP [dm6]	C	T	2.845e^-4	0.556	INTRON bru-3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3763790	3L_3763790_SNP [dm3] 3L_3763790_SNP [dm6]	A	T	2.853e^-4	0.556	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15040495	X_15040495_SNP [dm3] X_15146462_SNP [dm6]	G	A	2.864e^-4	0.556	SPLICE_SITE_REGION CG9095 INTRON CG9095
2L	8954661	2L_8954661_SNP [dm3] 2L_8954661_SNP [dm6]	G	A	2.867e^-4	0.556	SYNONYMOUS_CODING CG31886	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	3680402	3L_3680402_SNP [dm3] 3L_3680402_SNP [dm6]	T	C	2.867e^-4	0.556	INTERGENIC
3L	2645611	3L_2645611_SNP [dm3] 3L_2645611_SNP [dm6]	C	A	2.872e^-4	0.556	INTRON CG1143	TF binding site mE1_TFBS_cad
2L	19803109	2L_19803109_SNP [dm3] 2L_19803109_SNP [dm6]	A	G	2.872e^-4	0.556	INTRON sick
2L	9853724	2L_9853724_SNP [dm3] 2L_9853724_SNP [dm6]	C	G	2.876e^-4	0.556	INTRON nAChRalpha6
3L	22126162	3L_22126162_SNP [dm3] 3L_22133062_SNP [dm6]	A	G	2.876e^-4	0.556	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	21320390	3R_21320390_SNP [dm3] 3R_25494668_SNP [dm6]	A	G	2.877e^-4	0.556	INTRON CG33494
3R	5955981	3R_5955981_SNP [dm3] 3R_10130259_SNP [dm6]	T	C	2.878e^-4	0.556	INTRON tws	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
X	5080122	X_5080122_SNP [dm3] X_5186089_SNP [dm6]	A	C	2.881e^-4	0.556	INTRON rg & 1 other
2R	9258848	2R_9258848_SNP [dm3] 2R_13371343_SNP [dm6]	A	T	2.884e^-4	0.556	INTERGENIC
2L	16237338	2L_16237338_SNP [dm3] 2L_16237338_SNP [dm6]	C	G	2.887e^-4	0.556	INTRON CG42817
3L	13159898	3L_13159898_SNP [dm3] 3L_13166798_SNP [dm6]	T	A	2.890e^-4	0.556	INTERGENIC
3L	17672212	3L_17672212_SNP [dm3] 3L_17679112_SNP [dm6]	C	A	2.898e^-4	0.556	INTRON CG34251
2R	12110433	2R_12110433_SNP [dm3] 2R_16222928_SNP [dm6]	T	A	2.898e^-4	0.556	UPSTREAM CG7798 DOWNSTREAM CG15706 EXON CR43898
2L	2737430	2L_2737430_SNP [dm3] 2L_2737430_SNP [dm6]	T	C	2.901e^-4	0.556	SYNONYMOUS_CODING CG31689 UPSTREAM mir-4914
2L	6508820	2L_6508820_SNP [dm3] 2L_6508820_SNP [dm6]	A	G	2.902e^-4	0.556	UPSTREAM CR44775 INTRON CG31637	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	22026237	3L_22026237_SNP [dm3] 3L_22033137_SNP [dm6]	G	T	2.906e^-4	0.556	INTERGENIC
3R	23900120	3R_23900120_SNP [dm3] 3R_28074398_SNP [dm6]	A	G	2.907e^-4	0.556	INTRON CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21341350	3R_21341350_SNP [dm3] 3R_25515628_SNP [dm6]	G	T	2.907e^-4	0.556	UPSTREAM msi INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	4093952	X_4093952_SNP [dm3] X_4199919_SNP [dm6]	A	T	2.908e^-4	0.556	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	19910188	2L_19910188_SNP [dm3] 2L_19910188_SNP [dm6]	C	A	2.914e^-4	0.556	NON_SYNONYMOUS_CODING sick DOWNSTREAM CR43097	TF binding site mE1_TFBS_chinmo
2L	10560955	2L_10560955_SNP [dm3] 2L_10560955_SNP [dm6]	A	G	2.919e^-4	0.556	INTRON Trim9
2R	11575711	2R_11575711_SNP [dm3] 2R_15688206_SNP [dm6]	G	T	2.921e^-4	0.556	NON_SYNONYMOUS_CODING Cep89 SPLICE_SITE_REGION Cep89 DOWNSTREAM Ranbp11	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9645105	3L_9645105_SNP [dm3] 3L_9652005_SNP [dm6]	A	T	2.925e^-4	0.556	INTRON fry & 1 other
2L	8493565	2L_8493565_SNP [dm3] 2L_8493565_SNP [dm6]	G	C	2.928e^-4	0.556	INTRON Dh31
2L	9423821	2L_9423821_SNP [dm3] 2L_9423821_SNP [dm6]	C	T	2.930e^-4	0.556	SYNONYMOUS_CODING Mco1	TF binding site mE1_TFBS_sens
3R	23201900	3R_23201900_SNP [dm3] 3R_27376178_SNP [dm6]	A	G	2.936e^-4	0.556	UTR_3_PRIME side
X	19932654	X_19932654_SNP [dm3] X_20038621_SNP [dm6]	A	T	2.937e^-4	0.556	INTRON Dop2R
2R	11575636	2R_11575636_SNP [dm3] 2R_15688131_SNP [dm6]	G	T	2.942e^-4	0.556	SYNONYMOUS_CODING Cep89 DOWNSTREAM Ranbp11	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	638038	2L_638038_SNP [dm3] 2L_638038_SNP [dm6]	G	C	2.944e^-4	0.556	INTERGENIC
3R	23777424	3R_23777424_SNP [dm3] 3R_27951702_SNP [dm6]	C	T	2.946e^-4	0.556	SYNONYMOUS_CODING Gp93 DOWNSTREAM CG4951	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18648339	3L_18648339_SNP [dm3] 3L_18655239_SNP [dm6]	G	T	2.954e^-4	0.556	INTRON MYPT-75D
2L	8086299	2L_8086299_SNP [dm3] 2L_8086299_SNP [dm6]	C	A	2.959e^-4	0.556	INTRON Bsg	TF binding site BDTNP1_TFBS_dl
2L	8086224	2L_8086224_SNP [dm3] 2L_8086224_SNP [dm6]	G	A	2.960e^-4	0.556	INTRON Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	16691072	3L_16691072_DEL [dm3] 3L_16697972_DEL [dm6]	AA	A	2.964e^-4	0.556	DOWNSTREAM CR45179 INTRON Lasp & 1 other
2L	8450506	2L_8450506_SNP [dm3] 2L_8450506_SNP [dm6]	T	G	2.967e^-4	0.556	SYNONYMOUS_CODING fu12 UPSTREAM U26	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8450632	2L_8450632_SNP [dm3] 2L_8450632_SNP [dm6]	C	T	2.967e^-4	0.556	SYNONYMOUS_CODING fu12	TF binding site mE1_TFBS_HSA
2L	20534583	2L_20534583_SNP [dm3] 2L_20534583_SNP [dm6]	G	A	2.968e^-4	0.556	INTERGENIC
3R	15085328	3R_15085328_SNP [dm3] 3R_19259606_SNP [dm6]	C	A	2.972e^-4	0.556	INTRON CG14280
2L	5954312	2L_5954312_SNP [dm3] 2L_5954312_SNP [dm6]	G	T	2.979e^-4	0.556	NON_SYNONYMOUS_CODING CG9044 DOWNSTREAM CG13999	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	12025776	3R_12025776_SNP [dm3] 3R_16200054_SNP [dm6]	A	T	2.983e^-4	0.556	INTRON CG6126
3R	12025788	3R_12025788_SNP [dm3] 3R_16200066_SNP [dm6]	G	A	2.983e^-4	0.556	INTRON CG6126
2L	7191874	2L_7191874_SNP [dm3] 2L_7191874_SNP [dm6]	A	G	2.984e^-4	0.556	NON_SYNONYMOUS_CODING CG4497	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14607643	3R_14607643_SNP [dm3] 3R_18781921_SNP [dm6]	C	T	2.984e^-4	0.556	INTRON CG7720
3L	1734509	3L_1734509_SNP [dm3] 3L_1734509_SNP [dm6]	G	A	2.984e^-4	0.556	SYNONYMOUS_CODING Oseg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	22052651	3L_22052651_SNP [dm3] 3L_22059551_SNP [dm6]	T	C	2.985e^-4	0.556	INTRON Oct-TyrR

By genomic position
Variant impact
Gene name

Wing_Intervein_Area5 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results