DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.766e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.04266

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	8.0176	0.0182

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2362 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	9562194	2L_9562194_SNP [dm3] 2L_9562194_SNP [dm6]	T	C	1.859e^-7	0.349	INTRON jp
2L	16062975	2L_16062975_SNP [dm3] 2L_16062975_SNP [dm6]	G	A	9.030e^-7	0.715	INTRON beat-Ia
2R	19024849	2R_19024849_SNP [dm3] 2R_23137326_SNP [dm6]	T	G	1.932e^-6	0.715	INTERGENIC
2R	17267393	2R_17267393_SNP [dm3] 2R_21379888_SNP [dm6]	A	C	3.822e^-6	0.715	UPSTREAM cv-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
X	13204342	X_13204342_SNP [dm3] X_13310309_SNP [dm6]	C	G	3.933e^-6	0.715	INTRON IP3K2
2R	19397731	2R_19397731_SNP [dm3] 2R_23510208_SNP [dm6]	G	A	4.362e^-6	0.715	INTERGENIC
3L	3547796	3L_3547796_SNP [dm3] 3L_3547796_SNP [dm6]	T	A	4.564e^-6	0.715	INTRON Eip63E
3L	17784937	3L_17784937_SNP [dm3] 3L_17791837_SNP [dm6]	C	A	5.066e^-6	0.715	UPSTREAM CG42815 DOWNSTREAM CG42816 INTERGENIC
2L	9562332	2L_9562332_SNP [dm3] 2L_9562332_SNP [dm6]	T	A	6.183e^-6	0.715	INTRON jp
2L	22098279	2L_22098279_SNP [dm3] 2L_22098279_SNP [dm6]	A	G	6.314e^-6	0.715	INTERGENIC
2R	4635561	2R_4635561_SNP [dm3] 2R_8748056_SNP [dm6]	C	T	6.776e^-6	0.715	UPSTREAM CG8740 INTRON CG8740
3L	413912	3L_413912_SNP [dm3] 3L_413912_SNP [dm6]	C	T	6.967e^-6	0.715	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	12819325	2R_12819325_SNP [dm3] 2R_16931820_SNP [dm6]	T	C	6.977e^-6	0.715	INTRON Pkc53E
3R	5121977	3R_5121977_SNP [dm3] 3R_9296255_SNP [dm6]	A	T	7.522e^-6	0.715	INTRON CG8861
3L	3547752	3L_3547752_INS [dm3] 3L_3547752_INS [dm6]	A	AAA	7.561e^-6	0.715	INTRON Eip63E
2R	18278806	2R_18278806_SNP [dm3] 2R_22391301_SNP [dm6]	A	G	7.792e^-6	0.715	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9287766	X_9287766_SNP [dm3] X_9393733_SNP [dm6]	T	C	8.214e^-6	0.715	INTRON mgl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9562900	2L_9562900_SNP [dm3] 2L_9562900_SNP [dm6]	C	T	8.991e^-6	0.715	INTRON jp
3L	9726892	3L_9726892_SNP [dm3] 3L_9733792_SNP [dm6]	G	A	9.043e^-6	0.715	NON_SYNONYMOUS_CODING CG6749 UPSTREAM mir-4986 DOWNSTREAM CG42268
3L	9726895	3L_9726895_SNP [dm3] 3L_9733795_SNP [dm6]	T	G	9.043e^-6	0.715	NON_SYNONYMOUS_CODING CG6749 UPSTREAM mir-4986 DOWNSTREAM CG42268
3R	5121979	3R_5121979_SNP [dm3] 3R_9296257_SNP [dm6]	T	G	1.022e^-5	0.715	INTRON CG8861
X	3602021	X_3602021_SNP [dm3] X_3707988_SNP [dm6]	G	A	1.075e^-5	0.715	INTRON Rala
3L	413923	3L_413923_SNP [dm3] 3L_413923_SNP [dm6]	A	G	1.102e^-5	0.715	INTERGENIC	TF binding site mE1_TFBS_Kr
X	20267857	X_20267857_SNP [dm3] X_20396830_SNP [dm6]	C	T	1.120e^-5	0.715	INTRON HERC2	TF binding site BDTNP1_TFBS_da
X	7697880	X_7697880_SNP [dm3] X_7803847_SNP [dm6]	A	C	1.139e^-5	0.715	INTERGENIC
3L	9726894	3L_9726894_SNP [dm3] 3L_9733794_SNP [dm6]	C	T	1.218e^-5	0.715	SYNONYMOUS_CODING CG6749 UPSTREAM mir-4986 DOWNSTREAM CG42268
2R	12539181	2R_12539181_SNP [dm3] 2R_16651676_SNP [dm6]	G	C	1.238e^-5	0.715	SYNONYMOUS_CODING Amyrel DOWNSTREAM gprs	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13913861	3R_13913861_SNP [dm3] 3R_18088139_SNP [dm6]	G	A	1.261e^-5	0.715	INTERGENIC
3L	4854515	3L_4854515_SNP [dm3] 3L_4854515_SNP [dm6]	A	G	1.273e^-5	0.715	INTERGENIC
2R	6284161	2R_6284161_SNP [dm3] 2R_10396656_SNP [dm6]	T	G	1.301e^-5	0.715	INTRON CG42732
3R	5847134	3R_5847134_SNP [dm3] 3R_10021412_SNP [dm6]	A	T	1.359e^-5	0.715	START_GAINED Mical UTR_5_PRIME Mical INTRON Mical	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9562922	2L_9562922_SNP [dm3] 2L_9562922_SNP [dm6]	T	C	1.369e^-5	0.715	INTRON jp
3L	12699724	3L_12699724_SNP [dm3] 3L_12706624_SNP [dm6]	T	A	1.393e^-5	0.715	INTRON mirr	TF binding site BDTNP1_TFBS_da
2L	9562971	2L_9562971_SNP [dm3] 2L_9562971_SNP [dm6]	T	C	1.437e^-5	0.715	INTRON jp
3L	3547744	3L_3547744_SNP [dm3] 3L_3547744_SNP [dm6]	A	T	1.572e^-5	0.715	INTRON Eip63E
2L	9562967	2L_9562967_SNP [dm3] 2L_9562967_SNP [dm6]	G	A	1.710e^-5	0.715	INTRON jp
3L	20888236	3L_20888236_SNP [dm3] 3L_20895136_SNP [dm6]	A	G	1.745e^-5	0.715	INTERGENIC
2L	7067580	2L_7067580_SNP [dm3] 2L_7067580_SNP [dm6]	T	G	1.779e^-5	0.715	UPSTREAM CG11289 INTERGENIC
2R	16971305	2R_16971305_SNP [dm3] 2R_21083800_SNP [dm6]	G	T	1.923e^-5	0.715	UPSTREAM Treh INTRON Treh
3L	19472074	3L_19472074_SNP [dm3] 3L_19478974_SNP [dm6]	G	A	2.221e^-5	0.715	UPSTREAM CR32207 DOWNSTREAM CR42842 INTERGENIC
3R	12909246	3R_12909246_SNP [dm3] 3R_17083524_SNP [dm6]	A	T	2.312e^-5	0.715	SYNONYMOUS_CODING kuk	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13993525	3L_13993525_SNP [dm3] 3L_14000425_SNP [dm6]	G	A	2.407e^-5	0.715	SYNONYMOUS_CODING CG8783	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	20955871	3L_20955871_SNP [dm3] 3L_20962771_SNP [dm6]	C	T	2.536e^-5	0.715	UTR_3_PRIME CG12983 UPSTREAM CG10587	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	17588832	2L_17588832_SNP [dm3] 2L_17588832_SNP [dm6]	C	A	2.564e^-5	0.715	UPSTREAM Oli & 1 other DOWNSTREAM CR44410 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11543417	2R_11543417_SNP [dm3] 2R_15655912_SNP [dm6]	T	G	2.742e^-5	0.715	INTRON CG42524
3L	8323241	3L_8323241_SNP [dm3] 3L_8330141_SNP [dm6]	C	T	2.763e^-5	0.715	UTR_3_PRIME CG34462
3L	12084593	3L_12084593_SNP [dm3] 3L_12091493_SNP [dm6]	A	C	2.807e^-5	0.715	INTERGENIC
2R	17930230	2R_17930230_SNP [dm3] 2R_22042725_SNP [dm6]	T	C	2.880e^-5	0.715	SYNONYMOUS_CODING PpD5
3L	411916	3L_411916_SNP [dm3] 3L_411916_SNP [dm6]	A	G	2.930e^-5	0.715	INTERGENIC
3R	25566674	3R_25566674_SNP [dm3] 3R_29740952_SNP [dm6]	C	T	2.931e^-5	0.715	SYNONYMOUS_CODING CG1969
3R	25566677	3R_25566677_SNP [dm3] 3R_29740955_SNP [dm6]	T	C	2.931e^-5	0.715	SYNONYMOUS_CODING CG1969
2L	22076857	2L_22076857_DEL [dm3] 2L_22076857_DEL [dm6]	TCA	T	3.045e^-5	0.715	INTERGENIC	transposable element FlyBase
2R	19390586	2R_19390586_SNP [dm3] 2R_23503063_SNP [dm6]	T	C	3.124e^-5	0.715	UTR_5_PRIME CG13559	TF binding site mE1_TFBS_inv
3L	9932477	3L_9932477_SNP [dm3] 3L_9939377_SNP [dm6]	A	G	3.141e^-5	0.715	INTRON CG34356
X	20267856	X_20267856_SNP [dm3] X_20396829_SNP [dm6]	T	C	3.175e^-5	0.715	INTRON HERC2	TF binding site BDTNP1_TFBS_da
3L	5706345	3L_5706345_SNP [dm3] 3L_5713245_SNP [dm6]	A	T	3.208e^-5	0.715	UPSTREAM CG44521 INTRON sif
X	13838383	X_13838383_SNP [dm3] X_13944350_SNP [dm6]	G	T	3.250e^-5	0.715	INTRON mamo
3L	439091	3L_439091_SNP [dm3] 3L_439091_SNP [dm6]	T	G	3.291e^-5	0.715	INTRON klar
3L	4870589	3L_4870589_SNP [dm3] 3L_4870589_SNP [dm6]	A	G	3.293e^-5	0.715	INTRON CG17150	TF binding site BDTNP1_TFBS_sna
2L	9883398	2L_9883398_SNP [dm3] 2L_9883398_SNP [dm6]	A	T	3.349e^-5	0.715	INTRON nAChRalpha6
2L	13948516	2L_13948516_SNP [dm3] 2L_13948516_SNP [dm6]	A	G	3.417e^-5	0.715	INTRON Ance-3
2L	21802262	2L_21802262_SNP [dm3] 2L_21802262_SNP [dm6]	A	G	3.433e^-5	0.715	INTERGENIC
X	8717448	X_8717448_SNP [dm3] X_8823415_SNP [dm6]	T	A	3.436e^-5	0.715	INTERGENIC
2L	7100403	2L_7100403_SNP [dm3] 2L_7100403_SNP [dm6]	G	A	3.459e^-5	0.715	SYNONYMOUS_CODING Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	12819382	2R_12819382_SNP [dm3] 2R_16931877_SNP [dm6]	A	G	3.498e^-5	0.715	INTRON Pkc53E
2L	22098270	2L_22098270_SNP [dm3] 2L_22098270_SNP [dm6]	G	A	3.544e^-5	0.715	INTERGENIC
3L	17796368	3L_17796368_SNP [dm3] 3L_17803268_SNP [dm6]	A	G	3.622e^-5	0.715	SYNONYMOUS_CODING CG5589 UPSTREAM NUCB1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	3261576	3L_3261576_SNP [dm3] 3L_3261576_SNP [dm6]	A	G	3.660e^-5	0.715	INTRON ckd
3L	3547769	3L_3547769_SNP [dm3] 3L_3547769_SNP [dm6]	T	C	3.666e^-5	0.715	INTRON Eip63E
2L	19901797	2L_19901797_DEL [dm3] 2L_19901797_DEL [dm6]	TAAAAACAAAA...	T	3.772e^-5	0.715	INTRON sick
3R	25576221	3R_25576221_SNP [dm3] 3R_29750499_SNP [dm6]	G	A	3.791e^-5	0.715	INTRON yata	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19603285	2L_19603285_SNP [dm3] 2L_19603285_SNP [dm6]	G	C	3.813e^-5	0.715	INTRON CR44978 & 1 other
3L	7722471	3L_7722471_SNP [dm3] 3L_7729371_SNP [dm6]	G	T	3.863e^-5	0.715	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
2R	8338654	2R_8338654_SNP [dm3] 2R_12451149_SNP [dm6]	C	A	3.877e^-5	0.715	SYNONYMOUS_CODING Dyb INTRON Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	7699487	3L_7699487_SNP [dm3] 3L_7706387_SNP [dm6]	G	A	3.967e^-5	0.715	SPLICE_SITE_REGION Ank2 INTRON CG32373 & 1 other
2R	13505969	2R_13505969_SNP [dm3] 2R_17618464_SNP [dm6]	T	G	3.997e^-5	0.715	UPSTREAM CG44403 INTRON CG10936
3R	25903009	3R_25903009_SNP [dm3] 3R_30077287_SNP [dm6]	T	C	4.030e^-5	0.715	INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	17920743	3L_17920743_SNP [dm3] 3L_17927643_SNP [dm6]	G	A	4.074e^-5	0.715	INTERGENIC
X	2244201	X_2244201_SNP [dm3] X_2350168_SNP [dm6]	C	A	4.085e^-5	0.715	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6481657	X_6481657_SNP [dm3] X_6587624_SNP [dm6]	T	C	4.123e^-5	0.715	INTRON CG34417
X	21878382	X_21878382_SNP [dm3] X_22476546_SNP [dm6]	T	C	4.168e^-5	0.715	INTRON CG12576
3L	17779007	3L_17779007_SNP [dm3] 3L_17785907_SNP [dm6]	A	T	4.197e^-5	0.715	UPSTREAM CR44668 INTERGENIC
3L	20908314	3L_20908314_SNP [dm3] 3L_20915214_SNP [dm6]	T	C	4.240e^-5	0.715	INTERGENIC
3L	454954	3L_454954_SNP [dm3] 3L_454954_SNP [dm6]	T	A	4.245e^-5	0.715	INTRON klar
3L	3547802	3L_3547802_SNP [dm3] 3L_3547802_SNP [dm6]	C	A	4.322e^-5	0.715	INTRON Eip63E
3R	5121954	3R_5121954_SNP [dm3] 3R_9296232_SNP [dm6]	A	G	4.356e^-5	0.715	INTRON CG8861
2R	13505970	2R_13505970_SNP [dm3] 2R_17618465_SNP [dm6]	C	A	4.419e^-5	0.715	UPSTREAM CG44403 INTRON CG10936
2L	8959192	2L_8959192_SNP [dm3] 2L_8959192_SNP [dm6]	G	A	4.425e^-5	0.715	UPSTREAM CG31886 DOWNSTREAM CG9525 INTERGENIC
2R	16074809	2R_16074809_SNP [dm3] 2R_20187304_SNP [dm6]	G	T	4.467e^-5	0.715	INTERGENIC
3L	10835049	3L_10835049_SNP [dm3] 3L_10841949_SNP [dm6]	A	T	4.481e^-5	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	20821277	3L_20821277_SNP [dm3] 3L_20828177_SNP [dm6]	C	T	4.512e^-5	0.715	UTR_5_PRIME Pka-R1 UPSTREAM Pka-R1 INTRON Pka-R1
2L	10787461	2L_10787461_INS [dm3] 2L_10787461_INS [dm6]	T	TT	4.517e^-5	0.715	INTRON CG31869
3R	7367748	3R_7367748_SNP [dm3] 3R_11542026_SNP [dm6]	G	T	4.549e^-5	0.715	INTRON dpr4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	5847555	3R_5847555_SNP [dm3] 3R_10021833_SNP [dm6]	C	T	4.572e^-5	0.715	UTR_5_PRIME Mical UPSTREAM Mical INTRON Mical	TF binding site mE1_TFBS_inv
3L	9726588	3L_9726588_SNP [dm3] 3L_9733488_SNP [dm6]	G	A	4.680e^-5	0.715	DOWNSTREAM mir-4986 & 1 other INTRON CG6749
2R	6019797	2R_6019797_DEL [dm3] 2R_10132292_DEL [dm6]	CA	C	4.712e^-5	0.715	INTRON gem	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	21979570	2L_21979570_SNP [dm3] 2L_21979570_SNP [dm6]	T	A	4.729e^-5	0.715	INTERGENIC
3L	20955869	3L_20955869_SNP [dm3] 3L_20962769_SNP [dm6]	G	T	4.767e^-5	0.715	UTR_3_PRIME CG12983 UPSTREAM CG10587	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	16582512	X_16582512_SNP [dm3] X_16688479_SNP [dm6]	C	T	4.794e^-5	0.715	UPSTREAM Sep4 INTRON Sep4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25566856	3R_25566856_SNP [dm3] 3R_29741134_SNP [dm6]	C	T	4.821e^-5	0.715	DOWNSTREAM CG7609 INTRON CG1969
2R	17945007	2R_17945007_SNP [dm3] 2R_22057502_SNP [dm6]	T	C	4.867e^-5	0.715	SYNONYMOUS_CODING CG13500	TF binding site mE1_TFBS_cad
2L	9563571	2L_9563571_SNP [dm3] 2L_9563571_SNP [dm6]	A	G	4.869e^-5	0.715	INTRON jp
2L	22039882	2L_22039882_SNP [dm3] 2L_22039882_SNP [dm6]	T	C	4.901e^-5	0.715	DOWNSTREAM CG41434 & 1 other INTERGENIC
3R	25566855	3R_25566855_SNP [dm3] 3R_29741133_SNP [dm6]	G	A	4.948e^-5	0.715	DOWNSTREAM CG7609 INTRON CG1969
3L	12589933	3L_12589933_SNP [dm3] 3L_12596833_SNP [dm6]	C	T	4.955e^-5	0.715	DOWNSTREAM ara INTERGENIC
X	5462305	X_5462305_INS [dm3] X_5568272_INS [dm6]	A	ACACA	4.955e^-5	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	18784638	2L_18784638_SNP [dm3] 2L_18784638_SNP [dm6]	A	C	4.964e^-5	0.715	INTRON ham	TF binding site BDTNP1_TFBS_dl
2L	21851919	2L_21851919_INS [dm3] 2L_21851919_INS [dm6]	T	TTCT	5.005e^-5	0.715	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	19054065	2R_19054065_SNP [dm3] 2R_23166542_SNP [dm6]	C	T	5.019e^-5	0.715	INTRON CG34371	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	5129982	3R_5129982_SNP [dm3] 3R_9304260_SNP [dm6]	C	G	5.042e^-5	0.715	INTRON CG8861
X	21878369	X_21878369_SNP [dm3] X_22476533_SNP [dm6]	A	T	5.046e^-5	0.715	INTRON CG12576
2R	19054067	2R_19054067_SNP [dm3] 2R_23166544_SNP [dm6]	G	A	5.062e^-5	0.715	INTRON CG34371	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	26073802	3R_26073802_SNP [dm3] 3R_30248080_SNP [dm6]	G	C	5.076e^-5	0.715	UPSTREAM tRNA:CR31383 DOWNSTREAM tRNA:CR31023 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2L	3886319	2L_3886319_SNP [dm3] 2L_3886319_SNP [dm6]	C	G	5.094e^-5	0.715	INTRON capu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	17074271	2R_17074271_SNP [dm3] 2R_21186766_SNP [dm6]	A	G	5.132e^-5	0.715	SYNONYMOUS_CODING tud
2R	17267361	2R_17267361_SNP [dm3] 2R_21379856_SNP [dm6]	A	T	5.243e^-5	0.715	UPSTREAM cv-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	17784872	3L_17784872_SNP [dm3] 3L_17791772_SNP [dm6]	C	T	5.341e^-5	0.715	UPSTREAM CG42815 DOWNSTREAM CG42816 INTERGENIC
2L	22020494	2L_22020494_SNP [dm3] 2L_22020494_SNP [dm6]	A	G	5.349e^-5	0.715	DOWNSTREAM CR33987 INTRON tio	TF binding site mE1_TFBS_Trl
2L	15161217	2L_15161217_SNP [dm3] 2L_15161217_SNP [dm6]	T	G	5.401e^-5	0.715	DOWNSTREAM CG4168 & 1 other INTERGENIC
3R	11255600	3R_11255600_SNP [dm3] 3R_15429878_SNP [dm6]	A	T	5.411e^-5	0.715	INTRON CG6118
2L	16062764	2L_16062764_SNP [dm3] 2L_16062764_SNP [dm6]	T	A	5.415e^-5	0.715	INTRON beat-Ia
2L	9563825	2L_9563825_SNP [dm3] 2L_9563825_SNP [dm6]	T	C	5.436e^-5	0.715	INTRON jp
3L	19467940	3L_19467940_SNP [dm3] 3L_19474840_SNP [dm6]	C	T	5.467e^-5	0.715	DOWNSTREAM CG18294 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3L	16442415	3L_16442415_SNP [dm3] 3L_16449315_SNP [dm6]	C	T	5.497e^-5	0.715	INTRON CG33158 & 1 other
2L	21879086	2L_21879086_SNP [dm3] 2L_21879086_SNP [dm6]	C	G	5.515e^-5	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12929037	3L_12929037_SNP [dm3] 3L_12935937_SNP [dm6]	C	A	5.535e^-5	0.715	INTERGENIC
X	15134322	X_15134322_INS [dm3] X_15240289_INS [dm6]	G	GCTTAA	5.548e^-5	0.715	INTERGENIC
X	15134327	X_15134327_INS [dm3] X_15240294_INS [dm6]	T	TCTGG	5.548e^-5	0.715	INTERGENIC
X	15134335	X_15134335_SNP [dm3] X_15240302_SNP [dm6]	G	T	5.548e^-5	0.715	INTERGENIC
3R	4162760	3R_4162760_SNP [dm3] 3R_8337038_SNP [dm6]	C	G	5.580e^-5	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25566593	3R_25566593_SNP [dm3] 3R_29740871_SNP [dm6]	C	T	5.596e^-5	0.715	SYNONYMOUS_CODING CG1969
X	15134315	X_15134315_INS [dm3] X_15240282_INS [dm6]	A	ATAT	5.613e^-5	0.715	INTERGENIC
X	15134321	X_15134321_SNP [dm3] X_15240288_SNP [dm6]	T	C	5.613e^-5	0.715	INTERGENIC
2L	9576858	2L_9576858_SNP [dm3] 2L_9576858_SNP [dm6]	T	G	5.627e^-5	0.715	UPSTREAM Mtpalpha INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	20759720	3L_20759720_SNP [dm3] 3L_20766620_SNP [dm6]	G	A	5.648e^-5	0.715	INTERGENIC
2L	9560494	2L_9560494_SNP [dm3] 2L_9560494_SNP [dm6]	G	T	5.658e^-5	0.715	UPSTREAM jp INTRON jp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18572229	3L_18572229_DEL [dm3] 3L_18579129_DEL [dm6]	TGC	T	5.667e^-5	0.715	INTERGENIC
2L	9562896	2L_9562896_SNP [dm3] 2L_9562896_SNP [dm6]	C	T	5.691e^-5	0.715	INTRON jp
2R	19390538	2R_19390538_SNP [dm3] 2R_23503015_SNP [dm6]	A	G	5.694e^-5	0.715	UTR_5_PRIME CG13559	TF binding site mE1_TFBS_inv
3R	10387710	3R_10387710_SNP [dm3] 3R_14561988_SNP [dm6]	T	C	5.818e^-5	0.715	UPSTREAM CG14851 DOWNSTREAM CG14850 INTERGENIC
2R	11540657	2R_11540657_SNP [dm3] 2R_15653152_SNP [dm6]	G	C	5.831e^-5	0.715	INTRON CG42524
3R	12909008	3R_12909008_SNP [dm3] 3R_17083286_SNP [dm6]	A	C	5.911e^-5	0.715	NON_SYNONYMOUS_CODING kuk	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5617037	X_5617037_SNP [dm3] X_5723004_SNP [dm6]	C	A	5.917e^-5	0.715	SYNONYMOUS_CODING CG32758	TF binding site mE1_TFBS_cad
2R	11798044	2R_11798044_SNP [dm3] 2R_15910539_SNP [dm6]	A	T	5.953e^-5	0.715	INTRON sli
3L	4854006	3L_4854006_SNP [dm3] 3L_4854006_SNP [dm6]	G	T	5.964e^-5	0.715	INTERGENIC
2R	18894879	2R_18894879_SNP [dm3] 2R_23007356_SNP [dm6]	C	T	5.980e^-5	0.715	INTRON twi	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	8704103	2L_8704103_SNP [dm3] 2L_8704103_SNP [dm6]	C	T	6.040e^-5	0.715	INTRON Hnf4 EXON CR44992
2R	11540448	2R_11540448_SNP [dm3] 2R_15652943_SNP [dm6]	C	G	6.138e^-5	0.715	INTRON CG42524
X	20527420	X_20527420_DEL [dm3] X_20656393_DEL [dm6]	TC	T	6.147e^-5	0.715	UPSTREAM Cyp6v1 DOWNSTREAM CR45466 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13913199	3R_13913199_SNP [dm3] 3R_18087477_SNP [dm6]	C	T	6.173e^-5	0.715	INTERGENIC
X	20733104	X_20733104_SNP [dm3] X_20862077_SNP [dm6]	A	G	6.180e^-5	0.715	INTRON shakB
2R	1406000	2R_1406000_SNP [dm3] 2R_5518495_SNP [dm6]	G	A	6.198e^-5	0.715	UPSTREAM CG30438 INTRON CG30438	transposable element FlyBase
2L	19603287	2L_19603287_DEL [dm3] 2L_19603287_DEL [dm6]	ATTAGCAA	T	6.210e^-5	0.715	INTRON CR44978 & 1 other
2R	19522673	2R_19522673_SNP [dm3] 2R_23635150_SNP [dm6]	G	T	6.227e^-5	0.715	INTRON retn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	18917905	2R_18917905_SNP [dm3] 2R_23030382_SNP [dm6]	T	C	6.274e^-5	0.715	INTRON twi & 1 other
3L	4350031	3L_4350031_SNP [dm3] 3L_4350031_SNP [dm6]	G	T	6.277e^-5	0.715	INTRON Cip4
X	1718697	X_1718697_SNP [dm3] X_1824664_SNP [dm6]	A	T	6.337e^-5	0.715	UPSTREAM CG42666 INTRON CG42666	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	17792946	3L_17792946_SNP [dm3] 3L_17799846_SNP [dm6]	C	A	6.371e^-5	0.715	INTRON NUCB1	TF binding site BDTNP1_TFBS_twi
2R	11543428	2R_11543428_SNP [dm3] 2R_15655923_SNP [dm6]	C	T	6.401e^-5	0.715	INTRON CG42524
3L	15077846	3L_15077846_SNP [dm3] 3L_15084746_SNP [dm6]	G	T	6.453e^-5	0.715	INTRON cp309	TF binding site mE1_TFBS_cad
2R	18236067	2R_18236067_SNP [dm3] 2R_22348562_SNP [dm6]	G	A	6.480e^-5	0.715	SYNONYMOUS_CODING CG11298 INTRON Liprin-gamma
3R	19964576	3R_19964576_INS [dm3] 3R_24138854_INS [dm6]	C	CA	6.540e^-5	0.715	INTRON Npc2f	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13506075	2R_13506075_SNP [dm3] 2R_17618570_SNP [dm6]	T	G	6.545e^-5	0.715	UPSTREAM CG44403 INTRON CG10936
2L	10554747	2L_10554747_SNP [dm3] 2L_10554747_SNP [dm6]	G	A	6.557e^-5	0.715	INTRON Trim9	TF binding site mE1_TFBS_cad
2L	13948496	2L_13948496_SNP [dm3] 2L_13948496_SNP [dm6]	C	T	6.558e^-5	0.715	INTRON Ance-3
3L	15077891	3L_15077891_SNP [dm3] 3L_15084791_SNP [dm6]	T	A	6.568e^-5	0.715	INTRON cp309
3L	12216222	3L_12216222_SNP [dm3] 3L_12223122_SNP [dm6]	A	G	6.625e^-5	0.715	INTRON app
3L	5706417	3L_5706417_SNP [dm3] 3L_5713317_SNP [dm6]	G	T	6.642e^-5	0.715	UPSTREAM CG44521 INTRON sif
3L	17785817	3L_17785817_SNP [dm3] 3L_17792717_SNP [dm6]	C	T	6.649e^-5	0.715	SYNONYMOUS_CODING CG42816
3L	20953405	3L_20953405_SNP [dm3] 3L_20960305_SNP [dm6]	G	T	6.700e^-5	0.715	UTR_3_PRIME CG10588 DOWNSTREAM CG11037 & 1 other
2L	10787426	2L_10787426_SNP [dm3] 2L_10787426_SNP [dm6]	G	A	6.825e^-5	0.715	INTRON CG31869
3L	3547801	3L_3547801_SNP [dm3] 3L_3547801_SNP [dm6]	T	C	6.844e^-5	0.715	INTRON Eip63E
2L	10787364	2L_10787364_DEL [dm3] 2L_10787364_DEL [dm6]	ACCATGTGCTTCGCACATA...	A	6.942e^-5	0.715	INTRON CG31869
2L	10787384	2L_10787384_SNP [dm3] 2L_10787384_SNP [dm6]	C	G	6.942e^-5	0.715	INTRON CG31869
2L	13604602	2L_13604602_SNP [dm3] 2L_13604602_SNP [dm6]	T	G	6.947e^-5	0.715	INTRON kuz
2L	13983778	2L_13983778_SNP [dm3] 2L_13983778_SNP [dm6]	T	A	6.970e^-5	0.715	DOWNSTREAM NimC2 INTRON rk	TF binding site mE1_TFBS_chinmo
2L	13604592	2L_13604592_SNP [dm3] 2L_13604592_SNP [dm6]	A	T	7.049e^-5	0.715	INTRON kuz
X	16582438	X_16582438_SNP [dm3] X_16688405_SNP [dm6]	G	A	7.088e^-5	0.715	UPSTREAM Sep4 INTRON Sep4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	20781035	3L_20781035_SNP [dm3] 3L_20787935_SNP [dm6]	G	A	7.122e^-5	0.715	SYNONYMOUS_CODING CG11396 DOWNSTREAM Six4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	1171415	X_1171415_SNP [dm3] X_1277382_SNP [dm6]	T	G	7.126e^-5	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	2996238	3L_2996238_INS [dm3] 3L_2996238_INS [dm6]	C	CGTTAACAC	7.225e^-5	0.715	DOWNSTREAM CG2113 INTERGENIC
2L	21067663	2L_21067663_SNP [dm3] 2L_21067663_SNP [dm6]	C	G	7.231e^-5	0.715	INTRON CG9265
2R	18815010	2R_18815010_SNP [dm3] 2R_22927487_SNP [dm6]	A	G	7.398e^-5	0.715	INTRON CG42678	TF binding site mE1_TFBS_cad
X	4427868	X_4427868_SNP [dm3] X_4533835_SNP [dm6]	C	A	7.405e^-5	0.715	UTR_3_PRIME CG3556 INTRON CR32773
2L	9571449	2L_9571449_SNP [dm3] 2L_9571449_SNP [dm6]	G	A	7.479e^-5	0.715	INTRON CG3838
2L	4123207	2L_4123207_SNP [dm3] 2L_4123207_SNP [dm6]	A	G	7.488e^-5	0.715	SYNONYMOUS_CODING Sr-CI	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17755475	3R_17755475_SNP [dm3] 3R_21929753_SNP [dm6]	T	C	7.515e^-5	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	13506100	2R_13506100_SNP [dm3] 2R_17618595_SNP [dm6]	T	G	7.534e^-5	0.715	UPSTREAM CG44403 INTRON CG10936
3R	13908845	3R_13908845_SNP [dm3] 3R_18083123_SNP [dm6]	T	C	7.683e^-5	0.715	DOWNSTREAM CG14317 INTERGENIC
2L	7100439	2L_7100439_SNP [dm3] 2L_7100439_SNP [dm6]	G	C	7.686e^-5	0.715	SYNONYMOUS_CODING Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	17035200	2R_17035200_SNP [dm3] 2R_21147695_SNP [dm6]	C	T	7.707e^-5	0.715	UTR_3_PRIME CG15657 DOWNSTREAM CG30389 & 1 other	TF binding site mE1_TFBS_cad
2L	19683135	2L_19683135_SNP [dm3] 2L_19683135_SNP [dm6]	A	G	7.717e^-5	0.715	INTRON Lar
2L	6101662	2L_6101662_SNP [dm3] 2L_6101662_SNP [dm6]	C	A	7.717e^-5	0.715	INTRON stai
2R	19024800	2R_19024800_SNP [dm3] 2R_23137277_SNP [dm6]	G	A	7.720e^-5	0.715	INTERGENIC
2R	18236076	2R_18236076_SNP [dm3] 2R_22348571_SNP [dm6]	C	T	7.726e^-5	0.715	SYNONYMOUS_CODING CG11298 INTRON Liprin-gamma
2L	22091004	2L_22091004_SNP [dm3] 2L_22091004_SNP [dm6]	A	T	7.746e^-5	0.715	INTERGENIC	transposable element FlyBase
3L	17787281	3L_17787281_SNP [dm3] 3L_17794181_SNP [dm6]	T	C	7.758e^-5	0.715	NON_SYNONYMOUS_CODING CG42816
2L	21866518	2L_21866518_SNP [dm3] 2L_21866518_SNP [dm6]	A	G	7.803e^-5	0.715	UPSTREAM CR44917 & 1 other DOWNSTREAM CR44919 INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8575887	2L_8575887_SNP [dm3] 2L_8575887_SNP [dm6]	T	A	7.804e^-5	0.715	INTRON Sema-1a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	7931029	X_7931029_SNP [dm3] X_8036996_SNP [dm6]	T	C	7.872e^-5	0.715	SYNONYMOUS_CODING CG2233 DOWNSTREAM fs_1_h
2L	8558261	2L_8558261_DEL [dm3] 2L_8558261_DEL [dm6]	ACAT	A	7.880e^-5	0.715	INTRON Sema-1a	TF binding site mE1_TFBS_cad
X	15134317	X_15134317_SNP [dm3] X_15240284_SNP [dm6]	G	C	7.884e^-5	0.715	INTERGENIC
3L	20901759	3L_20901759_SNP [dm3] 3L_20908659_SNP [dm6]	T	C	7.906e^-5	0.715	INTERGENIC
2L	17470495	2L_17470495_SNP [dm3] 2L_17470495_SNP [dm6]	A	G	7.937e^-5	0.715	INTRON BicD
X	5489798	X_5489798_SNP [dm3] X_5595765_SNP [dm6]	A	T	7.957e^-5	0.715	INTRON Vsx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	11543513	2R_11543513_SNP [dm3] 2R_15656008_SNP [dm6]	G	A	7.965e^-5	0.715	INTRON CG42524
2L	21805871	2L_21805871_SNP [dm3] 2L_21805871_SNP [dm6]	G	C	7.986e^-5	0.715	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	21929390	2L_21929390_SNP [dm3] 2L_21929390_SNP [dm6]	G	C	8.033e^-5	0.715	UPSTREAM CR45334 INTERGENIC
3L	20901821	3L_20901821_SNP [dm3] 3L_20908721_SNP [dm6]	T	C	8.054e^-5	0.715	INTERGENIC
2R	18045512	2R_18045512_SNP [dm3] 2R_22158007_SNP [dm6]	A	T	8.264e^-5	0.715	INTRON a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	17784873	3L_17784873_SNP [dm3] 3L_17791773_SNP [dm6]	C	T	8.280e^-5	0.715	UPSTREAM CG42815 DOWNSTREAM CG42816 INTERGENIC
2R	13731338	2R_13731338_SNP [dm3] 2R_17843833_SNP [dm6]	T	A	8.321e^-5	0.715	UTR_5_PRIME olf186-F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8207093	2R_8207093_SNP [dm3] 2R_12319588_SNP [dm6]	G	T	8.334e^-5	0.715	INTERGENIC
2R	10548314	2R_10548314_INS [dm3] 2R_14660809_INS [dm6]	A	AA	8.383e^-5	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11805274	2R_11805274_SNP [dm3] 2R_15917769_SNP [dm6]	T	C	8.396e^-5	0.715	DOWNSTREAM CR44373 INTRON sli	TF binding site mE1_TFBS_cad
3L	12216229	3L_12216229_SNP [dm3] 3L_12223129_SNP [dm6]	T	A	8.423e^-5	0.715	INTRON app
2L	9358533	2L_9358533_SNP [dm3] 2L_9358533_SNP [dm6]	C	T	8.428e^-5	0.715	INTERGENIC
2L	13604448	2L_13604448_SNP [dm3] 2L_13604448_SNP [dm6]	G	T	8.455e^-5	0.715	INTRON kuz
3R	17755461	3R_17755461_SNP [dm3] 3R_21929739_SNP [dm6]	A	G	8.496e^-5	0.715	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	21878335	X_21878335_SNP [dm3] X_22476499_SNP [dm6]	G	C	8.526e^-5	0.715	INTRON CG12576
2L	9561419	2L_9561419_SNP [dm3] 2L_9561419_SNP [dm6]	T	A	8.549e^-5	0.715	UPSTREAM jp INTRON jp
2L	21932402	2L_21932402_SNP [dm3] 2L_21932402_SNP [dm6]	T	C	8.555e^-5	0.715	DOWNSTREAM CR45334 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	5120601	3R_5120601_SNP [dm3] 3R_9294879_SNP [dm6]	C	T	8.582e^-5	0.715	UTR_3_PRIME CG8861 DOWNSTREAM CG8861
3L	20904678	3L_20904678_SNP [dm3] 3L_20911578_SNP [dm6]	T	A	8.627e^-5	0.715	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	8613042	2L_8613042_SNP [dm3] 2L_8613042_SNP [dm6]	C	T	8.632e^-5	0.715	INTRON Sema-1a
3L	5756347	3L_5756347_SNP [dm3] 3L_5763247_SNP [dm6]	T	G	8.655e^-5	0.715	SYNONYMOUS_CODING CG10576 UPSTREAM snoRNA:Psi18S-1397 DOWNSTREAM snoRNA:684 & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19564919	2R_19564919_SNP [dm3] 2R_23677396_SNP [dm6]	C	G	8.675e^-5	0.715	INTRON Pde8	TF binding site mE1_TFBS_cad
2R	16543557	2R_16543557_SNP [dm3] 2R_20656052_SNP [dm6]	G	A	8.692e^-5	0.715	UPSTREAM CG16799 INTRON Lrt & 1 other
2L	21846992	2L_21846992_SNP [dm3] 2L_21846992_SNP [dm6]	A	C	8.754e^-5	0.717	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	20298672	3R_20298672_SNP [dm3] 3R_24472950_SNP [dm6]	A	C	8.835e^-5	0.719	INTERGENIC
2L	21307375	2L_21307375_SNP [dm3] 2L_21307375_SNP [dm6]	G	A	8.930e^-5	0.719	INTRON Mio
3L	9510026	3L_9510026_SNP [dm3] 3L_9516926_SNP [dm6]	C	G	8.937e^-5	0.719	INTRON CG33700
3L	20908348	3L_20908348_SNP [dm3] 3L_20915248_SNP [dm6]	G	A	8.939e^-5	0.719	INTERGENIC
3L	6055459	3L_6055459_SNP [dm3] 3L_6062359_SNP [dm6]	G	T	9.212e^-5	0.735	SYNONYMOUS_CODING CG10472 DOWNSTREAM CG6592	TF binding site mE1_TFBS_cad
X	5449042	X_5449042_SNP [dm3] X_5555009_SNP [dm6]	T	A	9.214e^-5	0.735	INTRON Vsx2	TF binding site mE1_TFBS_cnc
3R	16474409	3R_16474409_SNP [dm3] 3R_20648687_SNP [dm6]	A	T	9.329e^-5	0.741	UTR_5_PRIME GluRIIE UTR_3_PRIME GluRIID
3L	16629120	3L_16629120_DEL [dm3] 3L_16636020_DEL [dm6]	TT	T	9.374e^-5	0.741	INTRON Abl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25561859	3R_25561859_SNP [dm3] 3R_29736137_SNP [dm6]	T	C	9.409e^-5	0.741	SYNONYMOUS_CODING CG7601 UPSTREAM CG7598 DOWNSTREAM Kul	TF binding site mE1_TFBS_sens
2R	11798028	2R_11798028_SNP [dm3] 2R_15910523_SNP [dm6]	C	T	9.462e^-5	0.742	INTRON sli
3R	18444556	3R_18444556_SNP [dm3] 3R_22618834_SNP [dm6]	G	A	9.519e^-5	0.742	SYNONYMOUS_CODING mRpL45 DOWNSTREAM CG31161	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12939773	X_12939773_SNP [dm3] X_13045740_SNP [dm6]	G	T	9.538e^-5	0.742	INTRON rad
2L	9562535	2L_9562535_SNP [dm3] 2L_9562535_SNP [dm6]	T	C	9.675e^-5	0.749	INTRON jp
X	7931017	X_7931017_SNP [dm3] X_8036984_SNP [dm6]	T	C	9.759e^-5	0.753	SYNONYMOUS_CODING CG2233 DOWNSTREAM fs_1_h
2R	17964172	2R_17964172_SNP [dm3] 2R_22076667_SNP [dm6]	T	C	9.895e^-5	0.756	SYNONYMOUS_CODING GlcT-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16543558	2R_16543558_SNP [dm3] 2R_20656053_SNP [dm6]	T	C	9.924e^-5	0.756	UPSTREAM CG16799 INTRON Lrt & 1 other
3L	17785829	3L_17785829_SNP [dm3] 3L_17792729_SNP [dm6]	A	G	9.926e^-5	0.756	SYNONYMOUS_CODING CG42816
3R	19499164	3R_19499164_SNP [dm3] 3R_23673442_SNP [dm6]	C	A	1.012e^-4	0.759	INTERGENIC
2R	4707635	2R_4707635_SNP [dm3] 2R_8820130_SNP [dm6]	C	T	1.013e^-4	0.759	INTRON sns
2R	19024797	2R_19024797_SNP [dm3] 2R_23137274_SNP [dm6]	C	T	1.021e^-4	0.759	INTERGENIC
3R	15098337	3R_15098337_SNP [dm3] 3R_19272615_SNP [dm6]	A	C	1.023e^-4	0.759	INTERGENIC
3L	439153	3L_439153_SNP [dm3] 3L_439153_SNP [dm6]	A	C	1.024e^-4	0.759	INTRON klar
3R	17552598	3R_17552598_SNP [dm3] 3R_21726876_SNP [dm6]	A	T	1.036e^-4	0.759	INTERGENIC
3R	6885831	3R_6885831_SNP [dm3] 3R_11060109_SNP [dm6]	G	A	1.038e^-4	0.759	INTERGENIC
3R	5892177	3R_5892177_SNP [dm3] 3R_10066455_SNP [dm6]	C	G	1.041e^-4	0.759	UPSTREAM CG33783 INTERGENIC
2R	16707800	2R_16707800_SNP [dm3] 2R_20820295_SNP [dm6]	T	G	1.046e^-4	0.759	DOWNSTREAM insc INTERGENIC
3L	605232	3L_605232_SNP [dm3] 3L_605232_SNP [dm6]	G	A	1.060e^-4	0.759	SYNONYMOUS_CODING Reg-2	TF binding site mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6412067	2L_6412067_SNP [dm3] 2L_6412067_SNP [dm6]	A	G	1.069e^-4	0.759	UPSTREAM CG13982 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17421831	2R_17421831_DEL [dm3] 2R_21534326_DEL [dm6]	ATTACATTTGA...	T	1.070e^-4	0.759	INTRON Egfr	TF binding site BDTNP1_TFBS_prd
3L	4847462	3L_4847462_SNP [dm3] 3L_4847462_SNP [dm6]	T	A	1.075e^-4	0.759	INTERGENIC
3L	335436	3L_335436_SNP [dm3] 3L_335436_SNP [dm6]	A	G	1.075e^-4	0.759	SYNONYMOUS_CODING mthl10 INTRON Ptpmeg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15161155	2L_15161155_SNP [dm3] 2L_15161155_SNP [dm6]	C	T	1.077e^-4	0.759	DOWNSTREAM CG4168 & 1 other INTERGENIC
2L	14006153	2L_14006153_DEL [dm3] 2L_14006153_DEL [dm6]	CATTTC	C	1.079e^-4	0.759	INTERGENIC
3R	19964567	3R_19964567_SNP [dm3] 3R_24138845_SNP [dm6]	C	T	1.083e^-4	0.759	INTRON Npc2f	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	1718768	X_1718768_DEL [dm3] X_1824735_DEL [dm6]	CGATTC	C	1.084e^-4	0.759	UPSTREAM CG42666 INTRON CG42666	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10456344	3L_10456344_SNP [dm3] 3L_10463244_SNP [dm6]	T	A	1.084e^-4	0.759	UPSTREAM CG32061 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	1.086e^-4	0.759	INTRON dnc
2R	17074701	2R_17074701_SNP [dm3] 2R_21187196_SNP [dm6]	G	A	1.087e^-4	0.759	SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_sens
2R	16359739	2R_16359739_SNP [dm3] 2R_20472234_SNP [dm6]	C	T	1.088e^-4	0.759	SYNONYMOUS_CODING CG12484
2L	21802210	2L_21802210_SNP [dm3] 2L_21802210_SNP [dm6]	G	A	1.089e^-4	0.759	INTERGENIC
2R	4623039	2R_4623039_SNP [dm3] 2R_8735534_SNP [dm6]	C	A	1.093e^-4	0.759	UPSTREAM CG8740 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	5892809	3R_5892809_SNP [dm3] 3R_10067087_SNP [dm6]	A	G	1.100e^-4	0.759	UPSTREAM CG33784 INTRON CG33783
3L	3547646	3L_3547646_SNP [dm3] 3L_3547646_SNP [dm6]	C	T	1.102e^-4	0.759	INTRON Eip63E
3L	18547014	3L_18547014_SNP [dm3] 3L_18553914_SNP [dm6]	T	C	1.106e^-4	0.759	INTERGENIC
3R	19964571	3R_19964571_SNP [dm3] 3R_24138849_SNP [dm6]	T	A	1.112e^-4	0.759	INTRON Npc2f	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4092819	2L_4092819_SNP [dm3] 2L_4092819_SNP [dm6]	C	A	1.124e^-4	0.759	INTRON ed
X	13838356	X_13838356_SNP [dm3] X_13944323_SNP [dm6]	T	C	1.130e^-4	0.759	INTRON mamo
X	8241561	X_8241561_SNP [dm3] X_8347528_SNP [dm6]	A	T	1.132e^-4	0.759	INTRON nAChRalpha3
3L	17778728	3L_17778728_SNP [dm3] 3L_17785628_SNP [dm6]	C	G	1.134e^-4	0.759	UPSTREAM CR44668 INTERGENIC
X	13838340	X_13838340_SNP [dm3] X_13944307_SNP [dm6]	A	G	1.136e^-4	0.759	INTRON mamo
X	20009413	X_20009413_SNP [dm3] X_20115380_SNP [dm6]	A	T	1.137e^-4	0.759	INTERGENIC
2L	6579175	2L_6579175_SNP [dm3] 2L_6579175_SNP [dm6]	A	T	1.139e^-4	0.759	INTRON CG11319
2R	17873392	2R_17873392_SNP [dm3] 2R_21985887_SNP [dm6]	T	C	1.149e^-4	0.759	NON_SYNONYMOUS_CODING CG30401	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18850225	2L_18850225_SNP [dm3] 2L_18850225_SNP [dm6]	C	G	1.152e^-4	0.759	INTRON CG17321
2R	6019700	2R_6019700_SNP [dm3] 2R_10132195_SNP [dm6]	A	C	1.154e^-4	0.759	INTRON gem	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8330302	3L_8330302_DEL [dm3] 3L_8337202_DEL [dm6]	AC	A	1.155e^-4	0.759	INTRON Cpr66Cb
2L	13948455	2L_13948455_SNP [dm3] 2L_13948455_SNP [dm6]	G	A	1.158e^-4	0.759	UPSTREAM CG16884 INTRON Ance-3
3L	20904570	3L_20904570_SNP [dm3] 3L_20911470_SNP [dm6]	A	T	1.182e^-4	0.767	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19565658	2R_19565658_SNP [dm3] 2R_23678135_SNP [dm6]	T	G	1.182e^-4	0.767	SYNONYMOUS_CODING Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4929448	3L_4929448_SNP [dm3] 3L_4929448_SNP [dm6]	T	G	1.186e^-4	0.767	DOWNSTREAM CR43627 EXON CR43627
2L	9563017	2L_9563017_SNP [dm3] 2L_9563017_SNP [dm6]	G	A	1.190e^-4	0.767	INTRON jp
2L	13948457	2L_13948457_SNP [dm3] 2L_13948457_SNP [dm6]	A	G	1.194e^-4	0.767	UPSTREAM CG16884 INTRON Ance-3
3L	3547671	3L_3547671_SNP [dm3] 3L_3547671_SNP [dm6]	T	C	1.195e^-4	0.767	INTRON Eip63E
2L	22025869	2L_22025869_SNP [dm3] 2L_22025869_SNP [dm6]	C	T	1.198e^-4	0.767	DOWNSTREAM tio INTERGENIC
2L	13706495	2L_13706495_SNP [dm3] 2L_13706495_SNP [dm6]	G	A	1.204e^-4	0.768	INTRON CG31814
2R	12539421	2R_12539421_SNP [dm3] 2R_16651916_SNP [dm6]	G	A	1.213e^-4	0.768	SYNONYMOUS_CODING Amyrel DOWNSTREAM gprs	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9562155	2L_9562155_INS [dm3] 2L_9562155_INS [dm6]	A	ATATTCCTTAACGACA...	1.219e^-4	0.768	INTRON jp
3R	8638979	3R_8638979_SNP [dm3] 3R_12813257_SNP [dm6]	C	G	1.220e^-4	0.768	INTRON CG31345
3R	5414296	3R_5414296_SNP [dm3] 3R_9588574_SNP [dm6]	C	A	1.221e^-4	0.768	SYNONYMOUS_CODING P58IPK DOWNSTREAM bocksbeutel	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11598183	2R_11598183_SNP [dm3] 2R_15710678_SNP [dm6]	A	G	1.233e^-4	0.771	DOWNSTREAM CG30083 INTERGENIC
2R	18699185	2R_18699185_SNP [dm3] 2R_22811680_SNP [dm6]	G	C	1.235e^-4	0.771	INTRON stl
2R	19788160	2R_19788160_SNP [dm3] 2R_23900637_SNP [dm6]	C	T	1.240e^-4	0.772	SYNONYMOUS_CODING Lpt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12477370	2L_12477370_SNP [dm3] 2L_12477370_SNP [dm6]	A	C	1.251e^-4	0.772	INTRON bun
2R	16289158	2R_16289158_DEL [dm3] 2R_20401653_DEL [dm6]	CCG	C	1.256e^-4	0.772	INTERGENIC
2L	19603113	2L_19603113_SNP [dm3] 2L_19603113_SNP [dm6]	C	T	1.283e^-4	0.772	INTRON CR44978 & 1 other
X	7931030	X_7931030_SNP [dm3] X_8036997_SNP [dm6]	A	G	1.285e^-4	0.772	NON_SYNONYMOUS_CODING CG2233 DOWNSTREAM fs_1_h
3L	21046629	3L_21046629_SNP [dm3] 3L_21053529_SNP [dm6]	G	A	1.302e^-4	0.772	INTRON siz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	18462620	X_18462620_SNP [dm3] X_18568587_SNP [dm6]	A	G	1.303e^-4	0.772	INTRON Bx	TF binding site mE1_TFBS_chinmo
3R	23582428	3R_23582428_INS [dm3] 3R_27756706_INS [dm6]	C	CCTGTCGCTCCATT...	1.311e^-4	0.772	INTERGENIC
2L	20371657	2L_20371657_SNP [dm3] 2L_20371657_SNP [dm6]	T	G	1.311e^-4	0.772	DOWNSTREAM Ugt37a1 INTERGENIC
3R	13914478	3R_13914478_SNP [dm3] 3R_18088756_SNP [dm6]	T	C	1.313e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10111669	3R_10111669_SNP [dm3] 3R_14285947_SNP [dm6]	A	G	1.314e^-4	0.772	INTRON trx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	7488050	2L_7488050_SNP [dm3] 2L_7488050_SNP [dm6]	T	A	1.317e^-4	0.772	INTRON Ziz
3L	14406650	3L_14406650_SNP [dm3] 3L_14413550_SNP [dm6]	A	T	1.320e^-4	0.772	DOWNSTREAM CG3919 INTRON bbg
2L	5296658	2L_5296658_SNP [dm3] 2L_5296658_SNP [dm6]	G	A	1.320e^-4	0.772	DOWNSTREAM CR45730 INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	17755481	3R_17755481_SNP [dm3] 3R_21929759_SNP [dm6]	G	A	1.325e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_z
X	4094245	X_4094245_SNP [dm3] X_4200212_SNP [dm6]	A	G	1.328e^-4	0.772	INTRON Fas2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5441216	X_5441216_SNP [dm3] X_5547183_SNP [dm6]	C	T	1.333e^-4	0.772	INTRON Vsx2	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	12632367	3L_12632367_SNP [dm3] 3L_12639267_SNP [dm6]	A	G	1.335e^-4	0.772	INTRON CR32111
3R	13914747	3R_13914747_SNP [dm3] 3R_18089025_SNP [dm6]	A	G	1.338e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
2R	18535878	2R_18535878_SNP [dm3] 2R_22648373_SNP [dm6]	T	C	1.346e^-4	0.772	SYNONYMOUS_CODING CG34445 UPSTREAM CG34446 DOWNSTREAM CG3746
3L	1740467	3L_1740467_SNP [dm3] 3L_1740467_SNP [dm6]	A	C	1.350e^-4	0.772	INTRON Gk
X	19932654	X_19932654_SNP [dm3] X_20038621_SNP [dm6]	A	T	1.359e^-4	0.772	INTRON Dop2R
2L	9567366	2L_9567366_SNP [dm3] 2L_9567366_SNP [dm6]	C	G	1.365e^-4	0.772	UPSTREAM jp DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	19910559	2L_19910559_SNP [dm3] 2L_19910559_SNP [dm6]	C	A	1.370e^-4	0.772	DOWNSTREAM CR43097 INTRON sick
X	1171416	X_1171416_SNP [dm3] X_1277383_SNP [dm6]	T	A	1.371e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	4092824	2L_4092824_SNP [dm3] 2L_4092824_SNP [dm6]	C	G	1.372e^-4	0.772	INTRON ed
3R	17957461	3R_17957461_SNP [dm3] 3R_22131739_SNP [dm6]	T	C	1.373e^-4	0.772	INTRON CG42390
3R	6647730	3R_6647730_SNP [dm3] 3R_10822008_SNP [dm6]	T	C	1.384e^-4	0.772	INTERGENIC
3R	18113240	3R_18113240_SNP [dm3] 3R_22287518_SNP [dm6]	A	G	1.387e^-4	0.772	INTRON SKIP
2L	9571394	2L_9571394_SNP [dm3] 2L_9571394_SNP [dm6]	G	A	1.389e^-4	0.772	UTR_5_PRIME CG3838 INTRON CG3838
3R	25557485	3R_25557485_SNP [dm3] 3R_29731763_SNP [dm6]	A	G	1.391e^-4	0.772	SYNONYMOUS_CODING Kul UTR_3_PRIME Kul	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8933095	2L_8933095_SNP [dm3] 2L_8933095_SNP [dm6]	C	A	1.395e^-4	0.772	UTR_3_PRIME CG34398 UPSTREAM Tsp29Fa DOWNSTREAM CG34398
X	15135061	X_15135061_SNP [dm3] X_15241028_SNP [dm6]	G	C	1.410e^-4	0.772	INTERGENIC
3L	413373	3L_413373_SNP [dm3] 3L_413373_SNP [dm6]	G	A	1.417e^-4	0.772	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	17484835	2L_17484835_SNP [dm3] 2L_17484835_SNP [dm6]	T	C	1.422e^-4	0.772	SYNONYMOUS_CODING CG5131 UPSTREAM CG6453 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9726657	3L_9726657_INS [dm3] 3L_9733557_INS [dm6]	G	AA	1.422e^-4	0.772	DOWNSTREAM mir-4986 & 1 other INTRON CG6749
X	2244415	X_2244415_SNP [dm3] X_2350382_SNP [dm6]	A	G	1.435e^-4	0.772	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
3L	605227	3L_605227_SNP [dm3] 3L_605227_SNP [dm6]	T	C	1.441e^-4	0.772	NON_SYNONYMOUS_CODING Reg-2	TF binding site mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	20954936	3L_20954936_SNP [dm3] 3L_20961836_SNP [dm6]	G	T	1.442e^-4	0.772	UPSTREAM CG11037 DOWNSTREAM CG12983 INTRON CG10587	TF binding site BDTNP1_TFBS_prd
3L	6298614	3L_6298614_SNP [dm3] 3L_6305514_SNP [dm6]	G	A	1.449e^-4	0.772	UPSTREAM CR45113 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	18535881	2R_18535881_SNP [dm3] 2R_22648376_SNP [dm6]	G	T	1.450e^-4	0.772	NON_SYNONYMOUS_CODING CG34445 UPSTREAM CG34446 DOWNSTREAM CG3746
3R	19963607	3R_19963607_SNP [dm3] 3R_24137885_SNP [dm6]	T	A	1.459e^-4	0.772	UPSTREAM Npc2f DOWNSTREAM Sec10 INTERGENIC
X	4561367	X_4561367_SNP [dm3] X_4667334_SNP [dm6]	G	A	1.463e^-4	0.772	UTR_3_PRIME rap UPSTREAM CG3009	TF binding site mE1_TFBS_bab1
3R	4135967	3R_4135967_SNP [dm3] 3R_8310245_SNP [dm6]	A	T	1.466e^-4	0.772	UTR_5_PRIME CG11693 DOWNSTREAM CG11694 INTRON CG11693	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	25571015	3R_25571015_SNP [dm3] 3R_29745293_SNP [dm6]	C	T	1.467e^-4	0.772	UPSTREAM IntS11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	8249312	X_8249312_SNP [dm3] X_8355279_SNP [dm6]	A	G	1.469e^-4	0.772	INTRON nAChRalpha3
X	4206654	X_4206654_SNP [dm3] X_4312621_SNP [dm6]	G	A	1.471e^-4	0.772	UPSTREAM CG15579 INTRON CR44957
2R	18150986	2R_18150986_SNP [dm3] 2R_22263481_SNP [dm6]	T	A	1.475e^-4	0.772	INTRON dve
3L	1740510	3L_1740510_SNP [dm3] 3L_1740510_SNP [dm6]	C	A	1.486e^-4	0.772	INTRON Gk
2L	5248347	2L_5248347_SNP [dm3] 2L_5248347_SNP [dm6]	A	G	1.488e^-4	0.772	INTRON tkv
2R	2431711	2R_2431711_SNP [dm3] 2R_6544206_SNP [dm6]	G	A	1.489e^-4	0.772	INTRON jing	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8330300	3L_8330300_SNP [dm3] 3L_8337200_SNP [dm6]	A	T	1.493e^-4	0.772	INTRON Cpr66Cb
2R	19390248	2R_19390248_SNP [dm3] 2R_23502725_SNP [dm6]	G	T	1.498e^-4	0.772	UPSTREAM CG13559 INTERGENIC	TF binding site mE1_TFBS_inv
3R	16474451	3R_16474451_SNP [dm3] 3R_20648729_SNP [dm6]	A	T	1.503e^-4	0.772	UTR_3_PRIME GluRIID UPSTREAM GluRIIE
3L	12699666	3L_12699666_SNP [dm3] 3L_12706566_SNP [dm6]	A	T	1.504e^-4	0.772	INTRON mirr	TF binding site BDTNP1_TFBS_da
2L	7100227	2L_7100227_DEL [dm3] 2L_7100227_DEL [dm6]	AGA	A	1.509e^-4	0.772	INTRON Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	18652088	X_18652088_INS [dm3] X_18758055_INS [dm6]	T	TT	1.511e^-4	0.772	INTERGENIC
2R	17809586	2R_17809586_SNP [dm3] 2R_21922081_SNP [dm6]	A	T	1.518e^-4	0.772	INTRON Fili
2L	10483448	2L_10483448_SNP [dm3] 2L_10483448_SNP [dm6]	A	G	1.524e^-4	0.772	DOWNSTREAM RluA-2 INTRON Grip75	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	7615005	2R_7615005_SNP [dm3] 2R_11727500_SNP [dm6]	A	T	1.537e^-4	0.772	INTERGENIC	TF binding site mE1_TFBS_cad
3L	11186938	3L_11186938_SNP [dm3] 3L_11193838_SNP [dm6]	T	A	1.539e^-4	0.772	INTRON GlcAT-P
2R	15054145	2R_15054145_SNP [dm3] 2R_19166640_SNP [dm6]	T	G	1.539e^-4	0.772	INTRON CG10737	TF binding site mE1_TFBS_Trl
3R	5847307	3R_5847307_SNP [dm3] 3R_10021585_SNP [dm6]	A	T	1.542e^-4	0.772	UPSTREAM Mical INTRON Mical	TF binding site mE1_TFBS_HSA
2L	17928728	2L_17928728_SNP [dm3] 2L_17928728_SNP [dm6]	C	A	1.544e^-4	0.772	INTERGENIC	TF binding site mE1_TFBS_cad
3L	1239329	3L_1239329_SNP [dm3] 3L_1239329_SNP [dm6]	G	A	1.547e^-4	0.772	INTRON CG9194	TF binding site mE1_TFBS_cad
3L	20775821	3L_20775821_SNP [dm3] 3L_20782721_SNP [dm6]	C	T	1.549e^-4	0.772	INTRON CG11399	TF binding site mE1_TFBS_cad
3R	18053411	3R_18053411_SNP [dm3] 3R_22227689_SNP [dm6]	T	A	1.550e^-4	0.772	INTRON SKIP
2R	12132686	2R_12132686_SNP [dm3] 2R_16245181_SNP [dm6]	T	A	1.557e^-4	0.772	INTRON CngA	TF binding site mE1_TFBS_cad
2L	17605564	2L_17605564_SNP [dm3] 2L_17605564_SNP [dm6]	C	T	1.562e^-4	0.772	DOWNSTREAM CR44412 INTERGENIC
3R	25561464	3R_25561464_SNP [dm3] 3R_29735742_SNP [dm6]	T	A	1.574e^-4	0.772	SYNONYMOUS_CODING CG7601 DOWNSTREAM Kul
3R	4162761	3R_4162761_SNP [dm3] 3R_8337039_SNP [dm6]	A	G	1.577e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5248343	2L_5248343_SNP [dm3] 2L_5248343_SNP [dm6]	A	C	1.578e^-4	0.772	INTRON tkv
3R	5963561	3R_5963561_SNP [dm3] 3R_10137839_SNP [dm6]	T	C	1.580e^-4	0.772	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	8558317	2L_8558317_SNP [dm3] 2L_8558317_SNP [dm6]	A	C	1.585e^-4	0.772	INTRON Sema-1a	TF binding site mE1_TFBS_cad
3L	12216246	3L_12216246_SNP [dm3] 3L_12223146_SNP [dm6]	A	T	1.588e^-4	0.772	INTRON app
X	4466076	X_4466076_DEL [dm3] X_4572043_DEL [dm6]	TATGTACATACATACTCGT...	T	1.588e^-4	0.772	UPSTREAM CG12684 INTRON CR32773
3R	4162011	3R_4162011_SNP [dm3] 3R_8336289_SNP [dm6]	A	G	1.597e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	5296758	2L_5296758_SNP [dm3] 2L_5296758_SNP [dm6]	G	A	1.599e^-4	0.772	DOWNSTREAM CR45730 INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	10508777	2R_10508777_SNP [dm3] 2R_14621272_SNP [dm6]	A	T	1.604e^-4	0.772	UTR_5_PRIME CG12863 UPSTREAM Uhg5 & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_zfh1
2L	11201294	2L_11201294_SNP [dm3] 2L_11201294_SNP [dm6]	G	C	1.605e^-4	0.772	INTRON Ca-beta
3L	15077893	3L_15077893_DEL [dm3] 3L_15084793_DEL [dm6]	CGTAAT	C	1.607e^-4	0.772	INTRON cp309
2R	17714850	2R_17714850_SNP [dm3] 2R_21827345_SNP [dm6]	G	A	1.611e^-4	0.772	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad
3L	605448	3L_605448_SNP [dm3] 3L_605448_SNP [dm6]	G	A	1.626e^-4	0.772	SYNONYMOUS_CODING Reg-2	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	15963864	3L_15963864_SNP [dm3] 3L_15970764_SNP [dm6]	A	G	1.628e^-4	0.772	SYNONYMOUS_CODING brm DOWNSTREAM CG10516	TF binding site mE1_TFBS_sens
3L	7723000	3L_7723000_SNP [dm3] 3L_7729900_SNP [dm6]	T	C	1.637e^-4	0.772	SYNONYMOUS_CODING CG8492 INTRON CG32373
2L	7016094	2L_7016094_SNP [dm3] 2L_7016094_SNP [dm6]	G	A	1.638e^-4	0.772	SYNONYMOUS_CODING ade3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5248349	2L_5248349_SNP [dm3] 2L_5248349_SNP [dm6]	G	A	1.638e^-4	0.772	INTRON tkv
2L	17605565	2L_17605565_SNP [dm3] 2L_17605565_SNP [dm6]	C	T	1.645e^-4	0.772	DOWNSTREAM CR44412 INTERGENIC
2L	1757281	2L_1757281_SNP [dm3] 2L_1757281_SNP [dm6]	G	C	1.646e^-4	0.772	UPSTREAM Gr22f INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	25562078	3R_25562078_SNP [dm3] 3R_29736356_SNP [dm6]	A	G	1.647e^-4	0.772	SYNONYMOUS_CODING CG7601 UPSTREAM CG7598 DOWNSTREAM Kul	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	12179902	2R_12179902_SNP [dm3] 2R_16292397_SNP [dm6]	G	A	1.648e^-4	0.772	SYNONYMOUS_CODING CG7747 UPSTREAM CR43730 DOWNSTREAM CG30100 & 1 other
3L	14147707	3L_14147707_SNP [dm3] 3L_14154607_SNP [dm6]	G	T	1.650e^-4	0.772	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	20155618	X_20155618_SNP [dm3] X_20284591_SNP [dm6]	G	C	1.658e^-4	0.772	INTERGENIC
3R	6888307	3R_6888307_SNP [dm3] 3R_11062585_SNP [dm6]	A	C	1.665e^-4	0.772	INTERGENIC
3L	14247504	3L_14247504_SNP [dm3] 3L_14254404_SNP [dm6]	C	T	1.674e^-4	0.772	INTERGENIC
2R	18150966	2R_18150966_SNP [dm3] 2R_22263461_SNP [dm6]	T	C	1.676e^-4	0.772	INTRON dve
X	1718741	X_1718741_SNP [dm3] X_1824708_SNP [dm6]	A	T	1.677e^-4	0.772	UPSTREAM CG42666 INTRON CG42666	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6018423	2R_6018423_SNP [dm3] 2R_10130918_SNP [dm6]	G	A	1.683e^-4	0.772	INTRON gem	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2829565	X_2829565_SNP [dm3] X_2935532_SNP [dm6]	T	C	1.683e^-4	0.772	SYNONYMOUS_CODING CG3592 INTRON kirre
3R	25562933	3R_25562933_SNP [dm3] 3R_29737211_SNP [dm6]	C	A	1.686e^-4	0.772	SYNONYMOUS_CODING CG7598 UPSTREAM CG7601	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Ubx
2R	19565472	2R_19565472_SNP [dm3] 2R_23677949_SNP [dm6]	C	T	1.686e^-4	0.772	INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4848196	3L_4848196_SNP [dm3] 3L_4848196_SNP [dm6]	C	A	1.687e^-4	0.772	INTERGENIC
2L	8558273	2L_8558273_SNP [dm3] 2L_8558273_SNP [dm6]	G	T	1.692e^-4	0.772	INTRON Sema-1a	TF binding site mE1_TFBS_cad
X	19704451	X_19704451_SNP [dm3] X_19810418_SNP [dm6]	G	A	1.695e^-4	0.772	INTERGENIC
2L	9572815	2L_9572815_SNP [dm3] 2L_9572815_SNP [dm6]	A	G	1.698e^-4	0.772	SYNONYMOUS_CODING CG3838 DOWNSTREAM Mtpalpha
X	1944464	X_1944464_SNP [dm3] X_2050431_SNP [dm6]	A	C	1.708e^-4	0.772	UPSTREAM moody INTRON CG4313	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8448624	3L_8448624_SNP [dm3] 3L_8455524_SNP [dm6]	T	A	1.715e^-4	0.772	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	18555907	2R_18555907_SNP [dm3] 2R_22668402_SNP [dm6]	T	A	1.720e^-4	0.772	UPSTREAM CG13516 DOWNSTREAM CG30273 INTRON CG30269	TF binding site mE1_TFBS_cad
2R	18602229	2R_18602229_SNP [dm3] 2R_22714724_SNP [dm6]	C	T	1.729e^-4	0.772	SYNONYMOUS_CODING CG30268	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	19390102	2R_19390102_SNP [dm3] 2R_23502579_SNP [dm6]	G	T	1.732e^-4	0.772	UPSTREAM CG13559 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5296655	2L_5296655_SNP [dm3] 2L_5296655_SNP [dm6]	G	A	1.733e^-4	0.772	DOWNSTREAM CR45730 INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	7127046	2L_7127046_SNP [dm3] 2L_7127046_SNP [dm6]	A	T	1.749e^-4	0.772	INTRON Pvf3
2R	20206705	2R_20206705_SNP [dm3] 2R_24319182_SNP [dm6]	G	A	1.753e^-4	0.772	INTERGENIC
3L	12216231	3L_12216231_SNP [dm3] 3L_12223131_SNP [dm6]	G	A	1.765e^-4	0.772	INTRON app
3R	19366771	3R_19366771_SNP [dm3] 3R_23541049_SNP [dm6]	C	T	1.776e^-4	0.772	INTERGENIC
2R	18815646	2R_18815646_SNP [dm3] 2R_22928123_SNP [dm6]	T	A	1.778e^-4	0.772	UTR_3_PRIME CG42678 UPSTREAM CG42678 INTRON CG42678	TF binding site mE1_TFBS_cad
2R	16458924	2R_16458924_SNP [dm3] 2R_20571419_SNP [dm6]	T	A	1.783e^-4	0.772	INTRON qsm
3R	25576228	3R_25576228_SNP [dm3] 3R_29750506_SNP [dm6]	T	A	1.785e^-4	0.772	SPLICE_SITE_REGION yata INTRON yata	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25561375	3R_25561375_SNP [dm3] 3R_29735653_SNP [dm6]	C	T	1.786e^-4	0.772	NON_SYNONYMOUS_CODING CG7601 SPLICE_SITE_REGION CG7601 DOWNSTREAM Kul
2L	11956912	2L_11956912_SNP [dm3] 2L_11956912_SNP [dm6]	C	A	1.787e^-4	0.772	EXON CR43314
2R	13739728	2R_13739728_SNP [dm3] 2R_17852223_SNP [dm6]	T	C	1.791e^-4	0.772	INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	4376671	3R_4376671_SNP [dm3] 3R_8550949_SNP [dm6]	C	T	1.794e^-4	0.772	INTERGENIC
3L	5706130	3L_5706130_SNP [dm3] 3L_5713030_SNP [dm6]	C	G	1.795e^-4	0.772	UPSTREAM CG44521 INTRON sif
2L	6100966	2L_6100966_SNP [dm3] 2L_6100966_SNP [dm6]	C	A	1.796e^-4	0.772	INTRON stai	TF binding site BDTNP1_TFBS_dl
2R	17421828	2R_17421828_SNP [dm3] 2R_21534323_SNP [dm6]	A	G	1.802e^-4	0.772	INTRON Egfr	TF binding site BDTNP1_TFBS_prd
X	7931033	X_7931033_DEL [dm3] X_8037000_DEL [dm6]	CCAA	T	1.804e^-4	0.772	DOWNSTREAM fs_1_h
2L	16062752	2L_16062752_SNP [dm3] 2L_16062752_SNP [dm6]	A	C	1.804e^-4	0.772	INTRON beat-Ia
3R	12911121	3R_12911121_INS [dm3] 3R_17085399_INS [dm6]	G	GGTTT	1.809e^-4	0.772	UPSTREAM GckIII DOWNSTREAM kuk INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	5079873	2R_5079873_SNP [dm3] 2R_9192368_SNP [dm6]	T	A	1.811e^-4	0.772	UPSTREAM CG8026 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16239804	2L_16239804_SNP [dm3] 2L_16239804_SNP [dm6]	C	T	1.812e^-4	0.772	INTRON CG42817
3L	17785004	3L_17785004_DEL [dm3] 3L_17791904_DEL [dm6]	GATTCTCTA	G	1.820e^-4	0.772	UPSTREAM CG42815 DOWNSTREAM CG42816 INTERGENIC
2R	18535882	2R_18535882_SNP [dm3] 2R_22648377_SNP [dm6]	T	A	1.822e^-4	0.772	NON_SYNONYMOUS_CODING CG34445 UPSTREAM CG34446 DOWNSTREAM CG3746
3L	7724090	3L_7724090_SNP [dm3] 3L_7730990_SNP [dm6]	A	G	1.823e^-4	0.772	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	10498875	3L_10498875_SNP [dm3] 3L_10505775_SNP [dm6]	T	A	1.826e^-4	0.772	INTRON A2bp1
2R	4618295	2R_4618295_SNP [dm3] 2R_8730790_SNP [dm6]	G	C	1.827e^-4	0.772	SYNONYMOUS_CODING stmA
2R	4619589	2R_4619589_SNP [dm3] 2R_8732084_SNP [dm6]	A	G	1.827e^-4	0.772	INTRON stmA
2R	4626651	2R_4626651_SNP [dm3] 2R_8739146_SNP [dm6]	T	C	1.827e^-4	0.772	INTRON CG8740	TF binding site mE1_TFBS_cad
2R	4629412	2R_4629412_DEL [dm3] 2R_8741907_DEL [dm6]	AAGAAGA	A	1.827e^-4	0.772	INTRON CG8740
2R	19390250	2R_19390250_SNP [dm3] 2R_23502727_SNP [dm6]	C	T	1.834e^-4	0.772	UPSTREAM CG13559 INTERGENIC	TF binding site mE1_TFBS_inv
3L	17926743	3L_17926743_INS [dm3] 3L_17933643_INS [dm6]	A	ACA	1.834e^-4	0.772	UPSTREAM CG43173 & 1 other INTERGENIC
3R	4363255	3R_4363255_SNP [dm3] 3R_8537533_SNP [dm6]	A	G	1.844e^-4	0.772	INTERGENIC
3R	13906300	3R_13906300_SNP [dm3] 3R_18080578_SNP [dm6]	C	A	1.846e^-4	0.772	UPSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18462621	X_18462621_SNP [dm3] X_18568588_SNP [dm6]	T	A	1.846e^-4	0.772	INTRON Bx	TF binding site mE1_TFBS_chinmo
3L	17955861	3L_17955861_DEL [dm3] 3L_17962761_DEL [dm6]	TCTGGCT	T	1.853e^-4	0.772	UPSTREAM Eip75B INTRON Eip75B	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	7100243	2L_7100243_SNP [dm3] 2L_7100243_SNP [dm6]	G	C	1.857e^-4	0.772	INTRON Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	3030217	X_3030217_SNP [dm3] X_3136184_SNP [dm6]	A	C	1.858e^-4	0.772	INTRON N	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	17527471	3R_17527471_SNP [dm3] 3R_21701749_SNP [dm6]	G	A	1.874e^-4	0.772	INTRON CG31176
X	2244180	X_2244180_SNP [dm3] X_2350147_SNP [dm6]	A	T	1.880e^-4	0.772	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7273988	3R_7273988_SNP [dm3] 3R_11448266_SNP [dm6]	C	T	1.884e^-4	0.772	UTR_5_PRIME sals INTRON CG17230 & 1 other
2R	12132478	2R_12132478_SNP [dm3] 2R_16244973_SNP [dm6]	A	G	1.894e^-4	0.772	SYNONYMOUS_CODING CngA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12864171	3L_12864171_SNP [dm3] 3L_12871071_SNP [dm6]	G	A	1.896e^-4	0.772	INTERGENIC
2L	20371636	2L_20371636_SNP [dm3] 2L_20371636_SNP [dm6]	A	T	1.899e^-4	0.772	DOWNSTREAM Ugt37a1 INTERGENIC
2R	18151006	2R_18151006_SNP [dm3] 2R_22263501_SNP [dm6]	G	C	1.911e^-4	0.772	INTRON dve
3L	580886	3L_580886_SNP [dm3] 3L_580886_SNP [dm6]	A	C	1.912e^-4	0.772	UTR_3_PRIME hipk UPSTREAM Ppm1
2L	7057433	2L_7057433_SNP [dm3] 2L_7057433_SNP [dm6]	C	T	1.921e^-4	0.772	SYNONYMOUS_CODING Mnn1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6290817	3L_6290817_SNP [dm3] 3L_6297717_SNP [dm6]	C	A	1.926e^-4	0.772	INTERGENIC
3L	18545758	3L_18545758_SNP [dm3] 3L_18552658_SNP [dm6]	A	T	1.933e^-4	0.772	INTERGENIC
3R	25546509	3R_25546509_SNP [dm3] 3R_29720787_SNP [dm6]	A	T	1.940e^-4	0.772	INTRON CG15506
2L	19917528	2L_19917528_SNP [dm3] 2L_19917528_SNP [dm6]	G	T	1.953e^-4	0.772	UPSTREAM sick INTRON sick	TF binding site mE1_TFBS_Trl
3R	13914585	3R_13914585_SNP [dm3] 3R_18088863_SNP [dm6]	T	A	1.955e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15077889	3L_15077889_SNP [dm3] 3L_15084789_SNP [dm6]	A	T	1.957e^-4	0.772	INTRON cp309
2L	7127045	2L_7127045_SNP [dm3] 2L_7127045_SNP [dm6]	T	A	1.970e^-4	0.772	INTRON Pvf3
2R	14449242	2R_14449242_SNP [dm3] 2R_18561737_SNP [dm6]	C	G	1.977e^-4	0.772	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
X	9849318	X_9849318_DEL [dm3] X_9955285_DEL [dm6]	TCGACT	T	1.977e^-4	0.772	INTERGENIC
2L	7701084	2L_7701084_SNP [dm3] 2L_7701084_SNP [dm6]	G	T	1.978e^-4	0.772	INTRON Tep2	TF binding site mE1_TFBS_Trl
3R	25556845	3R_25556845_SNP [dm3] 3R_29731123_SNP [dm6]	A	G	1.981e^-4	0.772	NON_SYNONYMOUS_CODING Kul UTR_3_PRIME Kul	TF binding site mE1_TFBS_cad
3R	13914318	3R_13914318_SNP [dm3] 3R_18088596_SNP [dm6]	C	T	1.987e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15733653	3L_15733653_SNP [dm3] 3L_15740553_SNP [dm6]	G	A	1.992e^-4	0.772	INTERGENIC	TF binding site mE1_TFBS_Kr
X	18454746	X_18454746_INS [dm3] X_18560713_INS [dm6]	A	ACGATGAACA	2.004e^-4	0.772	INTRON Bx
3R	25855902	3R_25855902_SNP [dm3] 3R_30030180_SNP [dm6]	G	A	2.010e^-4	0.772	INTRON Axn	TF binding site BDTNP1_TFBS_dl
3L	18541070	3L_18541070_SNP [dm3] 3L_18547970_SNP [dm6]	G	A	2.011e^-4	0.772	INTERGENIC
2L	22076789	2L_22076789_SNP [dm3] 2L_22076789_SNP [dm6]	A	T	2.012e^-4	0.772	INTERGENIC
3L	454926	3L_454926_SNP [dm3] 3L_454926_SNP [dm6]	C	A	2.012e^-4	0.772	INTRON klar
3L	12316770	3L_12316770_SNP [dm3] 3L_12323670_SNP [dm6]	C	G	2.014e^-4	0.772	INTERGENIC
3L	9556163	3L_9556163_SNP [dm3] 3L_9563063_SNP [dm6]	C	T	2.020e^-4	0.772	INTRON CG42673
X	5259579	X_5259579_INS [dm3] X_5365546_INS [dm6]	C	CGTTACCGTTGCCC...	2.029e^-4	0.772	UTR_5_PRIME SK INTRON SK
3R	24355825	3R_24355825_SNP [dm3] 3R_28530103_SNP [dm6]	A	C	2.034e^-4	0.772	INTRON Ppn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	12538932	2R_12538932_SNP [dm3] 2R_16651427_SNP [dm6]	G	A	2.041e^-4	0.772	SYNONYMOUS_CODING Amyrel DOWNSTREAM gprs	TF binding site mE1_TFBS_cad
3R	14162452	3R_14162452_SNP [dm3] 3R_18336730_SNP [dm6]	G	A	2.044e^-4	0.772	INTRON CG15803
X	5440005	X_5440005_SNP [dm3] X_5545972_SNP [dm6]	G	A	2.051e^-4	0.772	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	4641313	2R_4641313_SNP [dm3] 2R_8753808_SNP [dm6]	G	T	2.061e^-4	0.772	SYNONYMOUS_CODING CG8740	TF binding site mE1_TFBS_chinmo
2R	4529775	2R_4529775_SNP [dm3] 2R_8642270_SNP [dm6]	G	T	2.064e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	12586539	2L_12586539_SNP [dm3] 2L_12586539_SNP [dm6]	G	T	2.071e^-4	0.772	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	821699	3L_821699_SNP [dm3] 3L_821699_SNP [dm6]	A	T	2.071e^-4	0.772	DOWNSTREAM CR43883 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9577163	2L_9577163_DEL [dm3] 2L_9577163_DEL [dm6]	ACAA	G	2.074e^-4	0.772	UPSTREAM Mtpalpha DOWNSTREAM CG31709 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
3L	22905235	3L_22905235_SNP [dm3] 3L_22912135_SNP [dm6]	G	A	2.076e^-4	0.772	SYNONYMOUS_CODING CG12768	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17852494	2L_17852494_SNP [dm3] 2L_17852494_SNP [dm6]	C	T	2.078e^-4	0.772	INTRON CadN2
3R	25563726	3R_25563726_SNP [dm3] 3R_29738004_SNP [dm6]	T	A	2.080e^-4	0.772	UTR_3_PRIME CG7598 UPSTREAM CG1969	TF binding site BDTNP1_TFBS_dl
3R	25555984	3R_25555984_SNP [dm3] 3R_29730262_SNP [dm6]	A	G	2.088e^-4	0.772	SYNONYMOUS_CODING Kul	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	4097032	X_4097032_INS [dm3] X_4202999_INS [dm6]	A	ACTATCTAACTAATC...	2.091e^-4	0.772	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	18152141	2R_18152141_SNP [dm3] 2R_22264636_SNP [dm6]	G	T	2.093e^-4	0.772	INTRON dve
3L	4814856	3L_4814856_SNP [dm3] 3L_4814856_SNP [dm6]	C	A	2.095e^-4	0.772	SYNONYMOUS_CODING Dhc64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	21859012	2L_21859012_SNP [dm3] 2L_21859012_SNP [dm6]	T	C	2.096e^-4	0.772	INTRON CR44917	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	8241526	X_8241526_SNP [dm3] X_8347493_SNP [dm6]	G	A	2.096e^-4	0.772	INTRON nAChRalpha3
3L	13185600	3L_13185600_SNP [dm3] 3L_13192500_SNP [dm6]	G	T	2.100e^-4	0.772	INTERGENIC	TF binding site mE1_TFBS_cad
2L	17662250	2L_17662250_SNP [dm3] 2L_17662250_SNP [dm6]	G	C	2.103e^-4	0.772	SYNONYMOUS_CODING CadN
2R	13741208	2R_13741208_SNP [dm3] 2R_17853703_SNP [dm6]	G	C	2.104e^-4	0.772	SYNONYMOUS_CODING CG30323 INTRON olf186-F
3L	6339187	3L_6339187_SNP [dm3] 3L_6346087_SNP [dm6]	G	A	2.106e^-4	0.772	INTRON CG13300
2L	7110313	2L_7110313_SNP [dm3] 2L_7110313_SNP [dm6]	A	C	2.107e^-4	0.772	INTRON Pvf3
2L	13948437	2L_13948437_SNP [dm3] 2L_13948437_SNP [dm6]	G	A	2.109e^-4	0.772	UPSTREAM CG16884 INTRON Ance-3
X	7680449	X_7680449_SNP [dm3] X_7786416_SNP [dm6]	A	T	2.110e^-4	0.772	INTERGENIC
3R	5847114	3R_5847114_SNP [dm3] 3R_10021392_SNP [dm6]	G	A	2.110e^-4	0.772	UTR_5_PRIME Mical INTRON Mical	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18756327	2R_18756327_SNP [dm3] 2R_22868804_SNP [dm6]	A	G	2.118e^-4	0.772	SYNONYMOUS_CODING fd59A	TF binding site BDTNP1_TFBS_dl
3L	15077892	3L_15077892_SNP [dm3] 3L_15084792_SNP [dm6]	T	G	2.119e^-4	0.772	INTRON cp309
3L	18559461	3L_18559461_SNP [dm3] 3L_18566361_SNP [dm6]	G	C	2.126e^-4	0.772	INTRON AstC-R1
2L	9583087	2L_9583087_SNP [dm3] 2L_9583087_SNP [dm6]	A	T	2.141e^-4	0.772	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	4664145	3L_4664145_SNP [dm3] 3L_4664145_SNP [dm6]	G	T	2.143e^-4	0.772	SYNONYMOUS_CODING axo
X	8590249	X_8590249_SNP [dm3] X_8696216_SNP [dm6]	C	T	2.153e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16582594	X_16582594_SNP [dm3] X_16688561_SNP [dm6]	C	T	2.154e^-4	0.772	INTRON Sep4	TF binding site BDTNP1_TFBS_dl
2R	16838708	2R_16838708_INS [dm3] 2R_20951203_INS [dm6]	A	AA	2.160e^-4	0.772	DOWNSTREAM CG33704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	5121948	3R_5121948_SNP [dm3] 3R_9296226_SNP [dm6]	C	A	2.162e^-4	0.772	INTRON CG8861
X	8602876	X_8602876_SNP [dm3] X_8708843_SNP [dm6]	A	T	2.170e^-4	0.772	UPSTREAM CR44507 & 1 other DOWNSTREAM CR44508 INTERGENIC
2L	5338898	2L_5338898_SNP [dm3] 2L_5338898_SNP [dm6]	T	C	2.174e^-4	0.772	UPSTREAM fusl DOWNSTREAM CG12512 INTERGENIC	TF binding site mE1_TFBS_HSA
X	3645034	X_3645034_SNP [dm3] X_3751001_SNP [dm6]	C	T	2.201e^-4	0.772	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5256720	X_5256720_SNP [dm3] X_5362687_SNP [dm6]	C	T	2.202e^-4	0.772	INTRON SK
2L	18148677	2L_18148677_SNP [dm3] 2L_18148677_SNP [dm6]	C	G	2.203e^-4	0.772	INTRON Socs36E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
3L	605247	3L_605247_SNP [dm3] 3L_605247_SNP [dm6]	G	T	2.206e^-4	0.772	SYNONYMOUS_CODING Reg-2	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	13948410	2L_13948410_SNP [dm3] 2L_13948410_SNP [dm6]	A	T	2.209e^-4	0.772	UPSTREAM CG16884 INTRON Ance-3
3R	7261179	3R_7261179_SNP [dm3] 3R_11435457_SNP [dm6]	G	C	2.209e^-4	0.772	SYNONYMOUS_CODING CG6744 UPSTREAM CG5281	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18545901	3L_18545901_SNP [dm3] 3L_18552801_SNP [dm6]	T	C	2.210e^-4	0.772	INTERGENIC
3R	5144182	3R_5144182_MNP [dm3] 3R_9318460_MNP [dm6]	TTCGC	CATAA	2.215e^-4	0.772	INTRON CG8861
X	9849341	X_9849341_SNP [dm3] X_9955308_SNP [dm6]	C	T	2.222e^-4	0.772	INTERGENIC
3R	25556321	3R_25556321_SNP [dm3] 3R_29730599_SNP [dm6]	T	C	2.222e^-4	0.772	INTRON Kul	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22211836	3R_22211836_SNP [dm3] 3R_26386114_SNP [dm6]	G	A	2.222e^-4	0.772	INTERGENIC
3R	13139061	3R_13139061_SNP [dm3] 3R_17313339_SNP [dm6]	G	T	2.230e^-4	0.772	INTERGENIC
2R	16458955	2R_16458955_SNP [dm3] 2R_20571450_SNP [dm6]	C	T	2.230e^-4	0.772	INTRON qsm
3L	14689120	3L_14689120_SNP [dm3] 3L_14696020_SNP [dm6]	G	A	2.242e^-4	0.772	DOWNSTREAM CG13474 INTRON ome
X	10855844	X_10855844_SNP [dm3] X_10961811_SNP [dm6]	G	A	2.261e^-4	0.772	INTRON Myo10A
3L	12216221	3L_12216221_SNP [dm3] 3L_12223121_SNP [dm6]	G	C	2.261e^-4	0.772	INTRON app
3R	21349366	3R_21349366_INS [dm3] 3R_25523644_INS [dm6]	T	TT	2.265e^-4	0.772	INTRON msi
3L	14385310	3L_14385310_INS [dm3] 3L_14392210_INS [dm6]	T	TGCTCTTAA	2.265e^-4	0.772	INTERGENIC
X	10855825	X_10855825_SNP [dm3] X_10961792_SNP [dm6]	G	A	2.267e^-4	0.772	INTRON Myo10A
2R	11545852	2R_11545852_SNP [dm3] 2R_15658347_SNP [dm6]	G	A	2.268e^-4	0.772	NON_SYNONYMOUS_CODING fus	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
X	3216268	X_3216268_SNP [dm3] X_3322235_SNP [dm6]	C	A	2.273e^-4	0.772	INTRON CR44886 & 1 other
2L	17703357	2L_17703357_SNP [dm3] 2L_17703357_SNP [dm6]	T	C	2.274e^-4	0.772	INTRON CadN	TF binding site mE1_TFBS_HSA
2R	16474928	2R_16474928_SNP [dm3] 2R_20587423_SNP [dm6]	C	T	2.282e^-4	0.772	UPSTREAM bl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	5902449	3R_5902449_SNP [dm3] 3R_10076727_SNP [dm6]	T	G	2.293e^-4	0.772	INTERGENIC
3R	4205741	3R_4205741_SNP [dm3] 3R_8380019_SNP [dm6]	A	T	2.295e^-4	0.772	INTRON CG45263
3L	6688077	3L_6688077_SNP [dm3] 3L_6694977_SNP [dm6]	C	A	2.299e^-4	0.772	INTRON SP1173
2R	20452871	2R_20452871_DEL [dm3] 2R_24565348_DEL [dm6]	ATTA	A	2.302e^-4	0.772	UPSTREAM uri DOWNSTREAM CG11414 INTERGENIC	TF binding site mE1_TFBS_cad
3R	5494787	3R_5494787_SNP [dm3] 3R_9669065_SNP [dm6]	T	C	2.315e^-4	0.772	NON_SYNONYMOUS_CODING CG9492
3L	9857356	3L_9857356_SNP [dm3] 3L_9864256_SNP [dm6]	T	A	2.316e^-4	0.772	UTR_5_PRIME iPLA2-VIA UPSTREAM CG8108	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	20901836	3L_20901836_SNP [dm3] 3L_20908736_SNP [dm6]	A	G	2.321e^-4	0.772	INTERGENIC
3R	19499167	3R_19499167_SNP [dm3] 3R_23673445_SNP [dm6]	T	A	2.321e^-4	0.772	INTERGENIC
3L	439239	3L_439239_SNP [dm3] 3L_439239_SNP [dm6]	G	C	2.323e^-4	0.772	INTRON klar
2R	17799165	2R_17799165_SNP [dm3] 2R_21911660_SNP [dm6]	T	A	2.329e^-4	0.772	INTRON Fili
X	12155789	X_12155789_SNP [dm3] X_12261756_SNP [dm6]	G	A	2.337e^-4	0.772	INTRON Ten-a
3R	26073841	3R_26073841_SNP [dm3] 3R_30248119_SNP [dm6]	G	A	2.340e^-4	0.772	UPSTREAM tRNA:CR31383 DOWNSTREAM tRNA:CR31023 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7358964	3L_7358964_SNP [dm3] 3L_7365864_SNP [dm6]	C	A	2.340e^-4	0.772	NON_SYNONYMOUS_CODING Sh3beta DOWNSTREAM Sh3beta INTRON Sh3beta	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15134340	X_15134340_INS [dm3] X_15240307_INS [dm6]	G	GTTGTCAAAAGATGAGTCTT...	2.341e^-4	0.772	INTERGENIC
X	15134348	X_15134348_SNP [dm3] X_15240315_SNP [dm6]	A	T	2.341e^-4	0.772	INTERGENIC
X	15134350	X_15134350_INS [dm3] X_15240317_INS [dm6]	T	TTAAACTATAAGTAGTGTTG...	2.341e^-4	0.772	INTERGENIC
2R	18535841	2R_18535841_SNP [dm3] 2R_22648336_SNP [dm6]	G	A	2.342e^-4	0.772	SYNONYMOUS_CODING CG34445 UPSTREAM CG34446 DOWNSTREAM CG3746
3R	15405944	3R_15405944_SNP [dm3] 3R_19580222_SNP [dm6]	A	T	2.346e^-4	0.772	INTRON Dys
3L	9857508	3L_9857508_INS [dm3] 3L_9864408_INS [dm6]	A	ATTTTGGCACGCACATTATT...	2.351e^-4	0.772	UPSTREAM CG8108 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25570656	3R_25570656_SNP [dm3] 3R_29744934_SNP [dm6]	G	A	2.351e^-4	0.772	SYNONYMOUS_CODING CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	15134355	X_15134355_INS [dm3] X_15240322_INS [dm6]	G	AC	2.359e^-4	0.772	INTERGENIC
3R	20072935	3R_20072935_SNP [dm3] 3R_24247213_SNP [dm6]	A	T	2.362e^-4	0.772	SYNONYMOUS_CODING mask	TF binding site mE1_TFBS_chinmo
3R	5891760	3R_5891760_SNP [dm3] 3R_10066038_SNP [dm6]	G	A	2.370e^-4	0.772	UPSTREAM CG33783 INTERGENIC
3L	4832962	3L_4832962_SNP [dm3] 3L_4832962_SNP [dm6]	A	G	2.382e^-4	0.772	NON_SYNONYMOUS_CODING CG13708	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	19633508	3L_19633508_DEL [dm3] 3L_19640408_DEL [dm6]	GTTTG	G	2.388e^-4	0.772	UTR_3_PRIME CG8786 INTRON CG8786
3L	581509	3L_581509_SNP [dm3] 3L_581509_SNP [dm6]	A	C	2.389e^-4	0.772	DOWNSTREAM hipk INTRON Ppm1
2L	6870694	2L_6870694_DEL [dm3] 2L_6870694_DEL [dm6]	CCAACTATATAGC...	C	2.390e^-4	0.772	UPSTREAM Nha1 DOWNSTREAM CR44915 INTERGENIC
3L	20901894	3L_20901894_SNP [dm3] 3L_20908794_SNP [dm6]	C	T	2.393e^-4	0.772	INTERGENIC
3L	580879	3L_580879_SNP [dm3] 3L_580879_SNP [dm6]	C	A	2.394e^-4	0.772	UTR_3_PRIME hipk UPSTREAM Ppm1
3L	439196	3L_439196_INS [dm3] 3L_439196_INS [dm6]	C	CG	2.408e^-4	0.772	INTRON klar
2L	6757121	2L_6757121_SNP [dm3] 2L_6757121_SNP [dm6]	C	T	2.408e^-4	0.772	DOWNSTREAM CG11221 & 1 other INTERGENIC
2R	4592576	2R_4592576_SNP [dm3] 2R_8705071_SNP [dm6]	C	T	2.409e^-4	0.772	DOWNSTREAM CG12376 INTERGENIC
3R	6105532	3R_6105532_SNP [dm3] 3R_10279810_SNP [dm6]	C	T	2.422e^-4	0.772	INTRON CG43143
2R	9586417	2R_9586417_SNP [dm3] 2R_13698912_SNP [dm6]	C	A	2.422e^-4	0.772	INTRON fas
3R	4325518	3R_4325518_SNP [dm3] 3R_8499796_SNP [dm6]	A	C	2.430e^-4	0.772	INTERGENIC
2L	21879057	2L_21879057_SNP [dm3] 2L_21879057_SNP [dm6]	G	A	2.432e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5016920	2R_5016920_SNP [dm3] 2R_9129415_SNP [dm6]	G	A	2.437e^-4	0.772	INTRON CG18659
2L	22060921	2L_22060921_SNP [dm3] 2L_22060921_SNP [dm6]	A	T	2.441e^-4	0.772	INTERGENIC
3R	24413609	3R_24413609_SNP [dm3] 3R_28587887_SNP [dm6]	C	T	2.445e^-4	0.772	EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	415143	3L_415143_DEL [dm3] 3L_415143_DEL [dm6]	AA	A	2.452e^-4	0.772	INTERGENIC
3L	9857381	3L_9857381_SNP [dm3] 3L_9864281_SNP [dm6]	G	C	2.454e^-4	0.772	START_GAINED iPLA2-VIA UTR_5_PRIME iPLA2-VIA UPSTREAM CG8108	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17886248	2R_17886248_SNP [dm3] 2R_21998743_SNP [dm6]	A	T	2.461e^-4	0.772	INTRON CG34370
2R	14354419	2R_14354419_SNP [dm3] 2R_18466914_SNP [dm6]	C	T	2.471e^-4	0.772	INTRON CG30116	TF binding site mE1_TFBS_chinmo
X	15134344	X_15134344_SNP [dm3] X_15240311_SNP [dm6]	C	G	2.474e^-4	0.772	INTERGENIC
2R	3415854	2R_3415854_SNP [dm3] 2R_7528349_SNP [dm6]	C	A	2.485e^-4	0.772	INTRON Drat	TF binding site BDTNP1_TFBS_twi
3L	21079615	3L_21079615_SNP [dm3] 3L_21086515_SNP [dm6]	C	G	2.487e^-4	0.772	INTRON ko	regulatory region REDfly_CRMs
X	8598926	X_8598926_SNP [dm3] X_8704893_SNP [dm6]	G	T	2.487e^-4	0.772	INTERGENIC
X	2887129	X_2887129_DEL [dm3] X_2993096_DEL [dm6]	TATGAAAATTGTTAT...	T	2.488e^-4	0.772	INTRON kirre
3L	7189766	3L_7189766_SNP [dm3] 3L_7196666_SNP [dm6]	G	A	2.488e^-4	0.772	INTERGENIC
3L	14406794	3L_14406794_SNP [dm3] 3L_14413694_SNP [dm6]	C	G	2.491e^-4	0.772	NON_SYNONYMOUS_CODING bbg DOWNSTREAM CG3919
3R	4014047	3R_4014047_DEL [dm3] 3R_8188325_DEL [dm6]	TT	T	2.491e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16149025	2R_16149025_SNP [dm3] 2R_20261520_SNP [dm6]	A	C	2.492e^-4	0.772	UTR_3_PRIME Hsl DOWNSTREAM PCNA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1857609	3L_1857609_SNP [dm3] 3L_1857609_SNP [dm6]	A	G	2.493e^-4	0.772	NON_SYNONYMOUS_CODING CG12024	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19691457	3L_19691457_SNP [dm3] 3L_19698357_SNP [dm6]	C	A	2.494e^-4	0.772	INTERGENIC
2R	1124433	2R_1124433_SNP [dm3] 2R_5236928_SNP [dm6]	C	A	2.504e^-4	0.772	INTRON Nipped-A	transposable element FlyBase
3L	7099040	3L_7099040_SNP [dm3] 3L_7105940_SNP [dm6]	G	A	2.511e^-4	0.772	INTRON form3
3R	18440203	3R_18440203_SNP [dm3] 3R_22614481_SNP [dm6]	C	T	2.511e^-4	0.772	SPLICE_SITE_REGION EF-G2 UPSTREAM CG31156 INTRON EF-G2	TF binding site mE1_TFBS_sens
3R	5120672	3R_5120672_SNP [dm3] 3R_9294950_SNP [dm6]	T	G	2.524e^-4	0.772	UTR_3_PRIME CG8861 DOWNSTREAM CG8861
3R	26074084	3R_26074084_DEL [dm3] 3R_30248362_DEL [dm6]	ATTAC	G	2.528e^-4	0.772	UPSTREAM tRNA:CR31383 DOWNSTREAM tRNA:CR31023 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8547757	3L_8547757_SNP [dm3] 3L_8554657_SNP [dm6]	A	T	2.537e^-4	0.772	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	450240	3L_450240_SNP [dm3] 3L_450240_SNP [dm6]	T	C	2.545e^-4	0.772	INTRON klar
3R	25570751	3R_25570751_SNP [dm3] 3R_29745029_SNP [dm6]	A	C	2.545e^-4	0.772	START_GAINED CG7609 UTR_5_PRIME CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14621308	3R_14621308_SNP [dm3] 3R_18795586_SNP [dm6]	T	G	2.556e^-4	0.772	UPSTREAM CG7720 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	12689072	3R_12689072_SNP [dm3] 3R_16863350_SNP [dm6]	G	A	2.565e^-4	0.772	INTRON iab-8
3R	13915413	3R_13915413_SNP [dm3] 3R_18089691_SNP [dm6]	G	A	2.566e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	1401742	2R_1401742_SNP [dm3] 2R_5514237_SNP [dm6]	A	G	2.570e^-4	0.772	INTRON CG30438	transposable element FlyBase
3R	17756568	3R_17756568_SNP [dm3] 3R_21930846_SNP [dm6]	G	A	2.582e^-4	0.772	INTERGENIC
X	14154495	X_14154495_SNP [dm3] X_14260462_SNP [dm6]	A	G	2.587e^-4	0.772	UPSTREAM CG1461 INTERGENIC
2R	18835351	2R_18835351_SNP [dm3] 2R_22947828_SNP [dm6]	A	G	2.587e^-4	0.772	INTERGENIC
2R	13193416	2R_13193416_SNP [dm3] 2R_17305911_SNP [dm6]	A	T	2.588e^-4	0.772	DOWNSTREAM CR43661 INTRON mbl
2R	4675443	2R_4675443_SNP [dm3] 2R_8787938_SNP [dm6]	A	G	2.604e^-4	0.772	INTERGENIC
2L	5883743	2L_5883743_SNP [dm3] 2L_5883743_SNP [dm6]	A	G	2.608e^-4	0.772	UTR_5_PRIME CG44574 DOWNSTREAM Sfp26Ac
X	5662908	X_5662908_INS [dm3] X_5768875_INS [dm6]	T	TGGTTGCTTGGTTGCTT...	2.622e^-4	0.772	INTRON CG42699 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19597661	2R_19597661_SNP [dm3] 2R_23710138_SNP [dm6]	T	C	2.630e^-4	0.772	UPSTREAM l_2_not DOWNSTREAM CR45326 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	8611860	X_8611860_SNP [dm3] X_8717827_SNP [dm6]	G	A	2.637e^-4	0.772	SYNONYMOUS_CODING l_1_G0020 DOWNSTREAM CG1785	TF binding site mE1_TFBS_HSA
X	5425397	X_5425397_SNP [dm3] X_5531364_SNP [dm6]	A	T	2.641e^-4	0.772	SYNONYMOUS_CODING Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3885666	2L_3885666_SNP [dm3] 2L_3885666_SNP [dm6]	C	G	2.658e^-4	0.772	INTRON capu	TF binding site mE1_TFBS_bab1
3L	8705163	3L_8705163_SNP [dm3] 3L_8712063_SNP [dm6]	G	T	2.659e^-4	0.772	INTERGENIC	regulatory region REDfly_CRMs
2R	11549578	2R_11549578_SNP [dm3] 2R_15662073_SNP [dm6]	G	A	2.662e^-4	0.772	SYNONYMOUS_CODING fus INTRON fus	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13605103	2L_13605103_DEL [dm3] 2L_13605103_DEL [dm6]	GTTGAGACCCACTCGGTTCA...	G	2.663e^-4	0.772	INTRON kuz
2L	19901820	2L_19901820_SNP [dm3] 2L_19901820_SNP [dm6]	G	T	2.665e^-4	0.772	INTRON sick
3R	12399697	3R_12399697_SNP [dm3] 3R_16573975_SNP [dm6]	C	T	2.670e^-4	0.772	UPSTREAM CG14903 DOWNSTREAM CG14891 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
2R	13259372	2R_13259372_SNP [dm3] 2R_17371867_SNP [dm6]	C	T	2.671e^-4	0.772	INTRON mbl
2R	19390516	2R_19390516_SNP [dm3] 2R_23502993_SNP [dm6]	G	A	2.678e^-4	0.772	UTR_5_PRIME CG13559	TF binding site mE1_TFBS_inv
3L	677700	3L_677700_SNP [dm3] 3L_677700_SNP [dm6]	T	A	2.681e^-4	0.772	DOWNSTREAM CG17129 INTERGENIC
3L	14689066	3L_14689066_SNP [dm3] 3L_14695966_SNP [dm6]	A	G	2.681e^-4	0.772	DOWNSTREAM CG13474 INTRON ome
3L	14425082	3L_14425082_SNP [dm3] 3L_14431982_SNP [dm6]	A	T	2.692e^-4	0.772	INTRON bbg
2R	11805302	2R_11805302_DEL [dm3] 2R_15917797_DEL [dm6]	TA	T	2.694e^-4	0.772	INTRON sli	TF binding site mE1_TFBS_cad
3L	1401254	3L_1401254_SNP [dm3] 3L_1401254_SNP [dm6]	T	C	2.699e^-4	0.772	UPSTREAM tRNA:E4:62Ad & 1 other INTRON Ptp61F & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
2R	2957893	2R_2957893_SNP [dm3] 2R_7070388_SNP [dm6]	A	C	2.707e^-4	0.772	UPSTREAM tRNA:CR30298 DOWNSTREAM CG12831 & 2 others INTERGENIC
3L	11543890	3L_11543890_INS [dm3] 3L_11550790_INS [dm6]	A	AGAG	2.713e^-4	0.772	INTRON Mob2	TF binding site mE1_TFBS_Trl
3L	14204517	3L_14204517_SNP [dm3] 3L_14211417_SNP [dm6]	T	A	2.717e^-4	0.772	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	25571069	3R_25571069_SNP [dm3] 3R_29745347_SNP [dm6]	T	C	2.722e^-4	0.772	UTR_5_PRIME IntS11 UPSTREAM CG7609	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	5440782	X_5440782_SNP [dm3] X_5546749_SNP [dm6]	T	C	2.730e^-4	0.772	SYNONYMOUS_CODING Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	5773659	3R_5773659_SNP [dm3] 3R_9947937_SNP [dm6]	G	C	2.731e^-4	0.772	INTRON Glut4EF
2L	15161110	2L_15161110_SNP [dm3] 2L_15161110_SNP [dm6]	G	A	2.733e^-4	0.772	UPSTREAM CR44771 DOWNSTREAM CG4168 & 1 other INTERGENIC
3R	20623599	3R_20623599_SNP [dm3] 3R_24797877_SNP [dm6]	G	A	2.742e^-4	0.772	UTR_3_PRIME Ets96B & 1 other
2L	9574777	2L_9574777_SNP [dm3] 2L_9574777_SNP [dm6]	T	A	2.745e^-4	0.772	SYNONYMOUS_CODING Mtpalpha	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4041665	3R_4041665_SNP [dm3] 3R_8215943_SNP [dm6]	T	A	2.747e^-4	0.772	INTERGENIC
3L	4814877	3L_4814877_SNP [dm3] 3L_4814877_SNP [dm6]	C	T	2.756e^-4	0.772	SYNONYMOUS_CODING Dhc64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1923241	2L_1923241_DEL [dm3] 2L_1923241_DEL [dm6]	TT	T	2.762e^-4	0.772	INTRON CG7337
2R	18427641	2R_18427641_SNP [dm3] 2R_22540136_SNP [dm6]	G	A	2.765e^-4	0.772	INTRON px
2R	18427642	2R_18427642_SNP [dm3] 2R_22540137_SNP [dm6]	A	C	2.765e^-4	0.772	INTRON px
3R	5501577	3R_5501577_SNP [dm3] 3R_9675855_SNP [dm6]	A	G	2.765e^-4	0.772	NON_SYNONYMOUS_CODING CG8358	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10828894	2L_10828894_SNP [dm3] 2L_10828894_SNP [dm6]	A	T	2.767e^-4	0.772	INTRON Nos
X	7669986	X_7669986_SNP [dm3] X_7775953_SNP [dm6]	C	T	2.771e^-4	0.772	INTERGENIC
X	9849152	X_9849152_SNP [dm3] X_9955119_SNP [dm6]	T	A	2.775e^-4	0.772	INTERGENIC
2L	17754757	2L_17754757_SNP [dm3] 2L_17754757_SNP [dm6]	T	G	2.781e^-4	0.772	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	5476907	3R_5476907_SNP [dm3] 3R_9651185_SNP [dm6]	T	G	2.786e^-4	0.772	UTR_3_PRIME CG9492 DOWNSTREAM Dh44
X	11021623	X_11021623_SNP [dm3] X_11127590_SNP [dm6]	G	T	2.791e^-4	0.772	SYNONYMOUS_CODING Gtp-bp DOWNSTREAM Rpt3	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13908836	3R_13908836_SNP [dm3] 3R_18083114_SNP [dm6]	A	G	2.792e^-4	0.772	DOWNSTREAM CG14317 INTERGENIC
X	14362040	X_14362040_SNP [dm3] X_14468007_SNP [dm6]	C	T	2.793e^-4	0.772	INTERGENIC
3R	12910707	3R_12910707_DEL [dm3] 3R_17084985_DEL [dm6]	GAA	CG	2.794e^-4	0.772	UPSTREAM GckIII DOWNSTREAM kuk INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4205206	2L_4205206_SNP [dm3] 2L_4205206_SNP [dm6]	T	C	2.800e^-4	0.772	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7701038	2L_7701038_SNP [dm3] 2L_7701038_SNP [dm6]	A	C	2.811e^-4	0.772	INTRON Tep2	TF binding site mE1_TFBS_Trl
2R	19521671	2R_19521671_SNP [dm3] 2R_23634148_SNP [dm6]	A	G	2.820e^-4	0.772	INTRON retn	TF binding site mE1_TFBS_cad
2L	8959462	2L_8959462_SNP [dm3] 2L_8959462_SNP [dm6]	C	G	2.820e^-4	0.772	UTR_3_PRIME CG9525 UPSTREAM CG31886 DOWNSTREAM CG9525
3R	5847316	3R_5847316_SNP [dm3] 3R_10021594_SNP [dm6]	G	A	2.824e^-4	0.772	UPSTREAM Mical INTRON Mical	TF binding site mE1_TFBS_HSA
2R	18649804	2R_18649804_DEL [dm3] 2R_22762299_DEL [dm6]	CATATTGACC	C	2.841e^-4	0.772	INTRON CG42260	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	7262959	3R_7262959_SNP [dm3] 3R_11437237_SNP [dm6]	C	T	2.855e^-4	0.772	UTR_3_PRIME CG5281 UPSTREAM CG17230 DOWNSTREAM sals	TF binding site mE1_TFBS_cad
3L	13336050	3L_13336050_SNP [dm3] 3L_13342950_SNP [dm6]	T	G	2.859e^-4	0.772	DOWNSTREAM CR44559 INTERGENIC
X	9849284	X_9849284_SNP [dm3] X_9955251_SNP [dm6]	A	C	2.869e^-4	0.772	INTERGENIC
3R	7349516	3R_7349516_SNP [dm3] 3R_11523794_SNP [dm6]	C	G	2.872e^-4	0.772	INTERGENIC
2R	12523230	2R_12523230_SNP [dm3] 2R_16635725_SNP [dm6]	C	T	2.876e^-4	0.772	INTRON Alk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	15002421	2R_15002421_SNP [dm3] 2R_19114916_SNP [dm6]	T	C	2.888e^-4	0.772	INTRON 5-HT1A
3R	7276952	3R_7276952_SNP [dm3] 3R_11451230_SNP [dm6]	C	A	2.890e^-4	0.772	UPSTREAM sals INTRON CG17230 & 1 other
2L	15245000	2L_15245000_SNP [dm3] 2L_15245000_SNP [dm6]	T	A	2.892e^-4	0.772	INTRON ZnT35C
2L	6255704	2L_6255704_SNP [dm3] 2L_6255704_SNP [dm6]	G	T	2.893e^-4	0.772	UPSTREAM CG9486 INTRON Ddr	TF binding site mE1_TFBS_HSA
2L	5777926	2L_5777926_SNP [dm3] 2L_5777926_SNP [dm6]	G	A	2.902e^-4	0.772	INTRON CG9171	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	951327	3L_951327_SNP [dm3] 3L_951327_SNP [dm6]	A	G	2.921e^-4	0.772	INTRON Glut1
3L	9510276	3L_9510276_DEL [dm3] 3L_9517176_DEL [dm6]	TT	T	2.922e^-4	0.772	INTRON CG33700
X	18835733	X_18835733_SNP [dm3] X_18941700_SNP [dm6]	T	C	2.923e^-4	0.772	INTRON CG43759
X	9849309	X_9849309_SNP [dm3] X_9955276_SNP [dm6]	T	C	2.931e^-4	0.772	INTERGENIC
2R	18142985	2R_18142985_SNP [dm3] 2R_22255480_SNP [dm6]	G	T	2.934e^-4	0.772	INTRON dve	TF binding site mE1_TFBS_sens
2R	12544015	2R_12544015_SNP [dm3] 2R_16656510_SNP [dm6]	C	T	2.934e^-4	0.772	SYNONYMOUS_CODING Picot	TF binding site mE1_TFBS_cad
3L	18748000	3L_18748000_SNP [dm3] 3L_18754900_SNP [dm6]	C	A	2.935e^-4	0.772	INTRON ftz-f1
2R	16025532	2R_16025532_INS [dm3] 2R_20138027_INS [dm6]	A	ACA	2.936e^-4	0.772	UPSTREAM CR44634 DOWNSTREAM CR44635 EXON CR44636
2R	18810179	2R_18810179_SNP [dm3] 2R_22922656_SNP [dm6]	T	G	2.945e^-4	0.772	NON_SYNONYMOUS_CODING Nup214
2R	19390085	2R_19390085_SNP [dm3] 2R_23502562_SNP [dm6]	A	G	2.951e^-4	0.772	UPSTREAM CG13559 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13604655	2L_13604655_SNP [dm3] 2L_13604655_SNP [dm6]	G	A	2.951e^-4	0.772	INTRON kuz
3L	14689118	3L_14689118_SNP [dm3] 3L_14696018_SNP [dm6]	T	A	2.959e^-4	0.772	DOWNSTREAM CG13474 INTRON ome
3R	10803959	3R_10803959_SNP [dm3] 3R_14978237_SNP [dm6]	C	T	2.964e^-4	0.772	INTERGENIC
2R	14354417	2R_14354417_SNP [dm3] 2R_18466912_SNP [dm6]	C	A	2.965e^-4	0.772	INTRON CG30116	TF binding site mE1_TFBS_chinmo
3L	9726673	3L_9726673_SNP [dm3] 3L_9733573_SNP [dm6]	T	C	2.965e^-4	0.772	DOWNSTREAM mir-4986 & 1 other INTRON CG6749
3L	15633361	3L_15633361_SNP [dm3] 3L_15640261_SNP [dm6]	G	A	2.967e^-4	0.772	INTRON comm3	TF binding site mE1_TFBS_inv
3L	8330587	3L_8330587_SNP [dm3] 3L_8337487_SNP [dm6]	C	A	2.976e^-4	0.772	INTRON Cpr66Cb
2R	9958271	2R_9958271_SNP [dm3] 2R_14070766_SNP [dm6]	A	G	2.979e^-4	0.772	INTRON Prosap
2R	9958274	2R_9958274_SNP [dm3] 2R_14070769_SNP [dm6]	T	A	2.979e^-4	0.772	INTRON Prosap
3L	14688910	3L_14688910_SNP [dm3] 3L_14695810_SNP [dm6]	G	A	2.983e^-4	0.772	DOWNSTREAM CG13474 INTRON ome
3L	22232054	3L_22232054_SNP [dm3] 3L_22238954_SNP [dm6]	C	T	2.991e^-4	0.772	INTRON olf413
X	13061834	X_13061834_DEL [dm3] X_13167801_DEL [dm6]	TCA	T	2.993e^-4	0.772	INTRON CG34411
3L	21156722	3L_21156722_SNP [dm3] 3L_21163622_SNP [dm6]	C	G	2.993e^-4	0.772	INTRON Ac78C
3R	24829892	3R_24829892_SNP [dm3] 3R_29004170_SNP [dm6]	C	T	3.000e^-4	0.772	INTRON wat
3R	26340163	3R_26340163_SNP [dm3] 3R_30514441_SNP [dm6]	T	C	3.003e^-4	0.772	UPSTREAM CG9698 & 1 other INTERGENIC
3R	11586586	3R_11586586_SNP [dm3] 3R_15760864_SNP [dm6]	T	G	3.007e^-4	0.772	INTERGENIC
2L	21838288	2L_21838288_SNP [dm3] 2L_21838288_SNP [dm6]	G	C	3.013e^-4	0.772	INTERGENIC
3R	25566546	3R_25566546_SNP [dm3] 3R_29740824_SNP [dm6]	C	T	3.023e^-4	0.772	INTRON CG1969
3R	25555669	3R_25555669_SNP [dm3] 3R_29729947_SNP [dm6]	T	C	3.023e^-4	0.772	SYNONYMOUS_CODING Kul	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	20197213	2R_20197213_INS [dm3] 2R_24309690_INS [dm6]	C	CACATCCCATC...	3.024e^-4	0.772	INTRON betaTub60D	regulatory region REDfly_CRMs
2L	9985299	2L_9985299_SNP [dm3] 2L_9985299_SNP [dm6]	T	A	3.028e^-4	0.772	UPSTREAM CR13130 INTRON bib	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19683935	2L_19683935_SNP [dm3] 2L_19683935_SNP [dm6]	T	G	3.033e^-4	0.772	INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8703259	2L_8703259_SNP [dm3] 2L_8703259_SNP [dm6]	C	T	3.034e^-4	0.772	UPSTREAM CR44992 INTRON Hnf4
X	14607970	X_14607970_SNP [dm3] X_14713937_SNP [dm6]	C	T	3.042e^-4	0.772	INTRON NetB
3R	13907007	3R_13907007_SNP [dm3] 3R_18081285_SNP [dm6]	A	T	3.051e^-4	0.772	SYNONYMOUS_CODING CG14317	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	21322374	3L_21322374_INS [dm3] 3L_21329274_INS [dm6]	A	AACTCAA	3.074e^-4	0.772	INTRON Rab26
2L	21932325	2L_21932325_SNP [dm3] 2L_21932325_SNP [dm6]	C	T	3.075e^-4	0.772	DOWNSTREAM CR45334 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	18462699	X_18462699_DEL [dm3] X_18568666_DEL [dm6]	ACCACGTTA	A	3.084e^-4	0.772	INTRON Bx	TF binding site mE1_TFBS_chinmo
3R	15098354	3R_15098354_SNP [dm3] 3R_19272632_SNP [dm6]	G	T	3.088e^-4	0.772	INTERGENIC
3L	9857976	3L_9857976_SNP [dm3] 3L_9864876_SNP [dm6]	T	C	3.096e^-4	0.772	UPSTREAM iPLA2-VIA INTRON CG8108	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	13862769	3L_13862769_SNP [dm3] 3L_13869669_SNP [dm6]	C	T	3.100e^-4	0.772	UTR_3_PRIME dysc
3L	20907595	3L_20907595_SNP [dm3] 3L_20914495_SNP [dm6]	A	T	3.100e^-4	0.772	UPSTREAM CR43930 INTERGENIC
2L	2259236	2L_2259236_SNP [dm3] 2L_2259236_SNP [dm6]	C	T	3.106e^-4	0.772	DOWNSTREAM CR44788 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	13968571	3R_13968571_SNP [dm3] 3R_18142849_SNP [dm6]	C	G	3.110e^-4	0.772	INTERGENIC
3R	15072981	3R_15072981_SNP [dm3] 3R_19247259_SNP [dm6]	T	C	3.118e^-4	0.772	UTR_3_PRIME CG5217	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	7838302	2L_7838302_SNP [dm3] 2L_7838302_SNP [dm6]	G	A	3.121e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	16081880	2L_16081880_SNP [dm3] 2L_16081880_SNP [dm6]	C	A	3.124e^-4	0.772	DOWNSTREAM beat-Ia INTERGENIC
2R	4631490	2R_4631490_SNP [dm3] 2R_8743985_SNP [dm6]	T	C	3.130e^-4	0.772	DOWNSTREAM CR44277 INTRON CG8740	TF binding site mE1_TFBS_chinmo
3L	15330573	3L_15330573_SNP [dm3] 3L_15337473_SNP [dm6]	C	T	3.140e^-4	0.772	SYNONYMOUS_CODING Toll-6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18152043	2R_18152043_SNP [dm3] 2R_22264538_SNP [dm6]	G	T	3.142e^-4	0.772	INTRON dve
3R	7274322	3R_7274322_SNP [dm3] 3R_11448600_SNP [dm6]	C	G	3.144e^-4	0.772	INTRON CG17230 & 1 other
3L	17765296	3L_17765296_SNP [dm3] 3L_17772196_SNP [dm6]	C	T	3.149e^-4	0.772	INTERGENIC
3L	20811290	3L_20811290_SNP [dm3] 3L_20818190_SNP [dm6]	A	T	3.159e^-4	0.772	UPSTREAM Pka-R1 & 1 other INTRON Pka-R1
3R	4354841	3R_4354841_SNP [dm3] 3R_8529119_SNP [dm6]	C	G	3.161e^-4	0.772	UPSTREAM CG11741 INTERGENIC	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	18539053	2R_18539053_SNP [dm3] 2R_22651548_SNP [dm6]	C	T	3.163e^-4	0.772	SYNONYMOUS_CODING nsr	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	16582402	X_16582402_SNP [dm3] X_16688369_SNP [dm6]	G	A	3.164e^-4	0.772	UPSTREAM Sep4 INTRON Sep4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14385326	3L_14385326_SNP [dm3] 3L_14392226_SNP [dm6]	C	T	3.169e^-4	0.772	INTERGENIC
3L	14097813	3L_14097813_SNP [dm3] 3L_14104713_SNP [dm6]	A	C	3.170e^-4	0.772	SYNONYMOUS_CODING Sox21a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4306168	2L_4306168_SNP [dm3] 2L_4306168_SNP [dm6]	G	C	3.175e^-4	0.772	DOWNSTREAM tutl INTRON tutl	TF binding site mE1_TFBS_chinmo
X	12907914	X_12907914_SNP [dm3] X_13013881_SNP [dm6]	C	T	3.182e^-4	0.772	INTRON rad
2L	5453935	2L_5453935_SNP [dm3] 2L_5453935_SNP [dm6]	G	T	3.187e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2L	20371652	2L_20371652_SNP [dm3] 2L_20371652_SNP [dm6]	G	C	3.188e^-4	0.772	DOWNSTREAM Ugt37a1 INTERGENIC
3R	12232769	3R_12232769_DEL [dm3] 3R_16407047_DEL [dm6]	AA	A	3.201e^-4	0.772	EXON CR45630
2L	10359952	2L_10359952_SNP [dm3] 2L_10359952_SNP [dm6]	A	T	3.206e^-4	0.772	INTRON Cand1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10359970	2L_10359970_SNP [dm3] 2L_10359970_SNP [dm6]	T	C	3.206e^-4	0.772	INTRON Cand1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	1705378	3R_1705378_SNP [dm3] 3R_5879656_SNP [dm6]	T	G	3.209e^-4	0.772	SYNONYMOUS_CODING CG34113 INTRON CG34113
3R	5120280	3R_5120280_SNP [dm3] 3R_9294558_SNP [dm6]	G	A	3.211e^-4	0.772	UTR_3_PRIME CG8861 DOWNSTREAM CG8861
X	20527090	X_20527090_DEL [dm3] X_20656063_DEL [dm6]	AT	A	3.220e^-4	0.772	DOWNSTREAM CR45466 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25570923	3R_25570923_SNP [dm3] 3R_29745201_SNP [dm6]	A	G	3.221e^-4	0.772	UPSTREAM IntS11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14141764	3L_14141764_SNP [dm3] 3L_14148664_SNP [dm6]	T	C	3.225e^-4	0.772	INTERGENIC	regulatory region REDfly_CRMs
3R	25560714	3R_25560714_SNP [dm3] 3R_29734992_SNP [dm6]	C	T	3.230e^-4	0.772	UTR_3_PRIME Kul DOWNSTREAM CG7601
3R	12970264	3R_12970264_SNP [dm3] 3R_17144542_SNP [dm6]	A	G	3.230e^-4	0.772	UTR_3_PRIME m-cup DOWNSTREAM m-cup
2L	19686963	2L_19686963_SNP [dm3] 2L_19686963_SNP [dm6]	G	A	3.230e^-4	0.772	INTRON Lar
2L	7700913	2L_7700913_SNP [dm3] 2L_7700913_SNP [dm6]	A	T	3.231e^-4	0.772	INTRON Tep2
2R	19190754	2R_19190754_SNP [dm3] 2R_23303231_SNP [dm6]	C	T	3.233e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11391128	3R_11391128_SNP [dm3] 3R_15565406_SNP [dm6]	A	T	3.237e^-4	0.772	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12997665	2L_12997665_SNP [dm3] 2L_12997665_SNP [dm6]	T	C	3.243e^-4	0.772	INTRON CG12404
3R	23777355	3R_23777355_SNP [dm3] 3R_27951633_SNP [dm6]	C	T	3.244e^-4	0.772	SYNONYMOUS_CODING Gp93 DOWNSTREAM CG4951	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17859704	2R_17859704_SNP [dm3] 2R_21972199_SNP [dm6]	A	G	3.252e^-4	0.772	UPSTREAM CG34029 & 1 other INTERGENIC
X	20156695	X_20156695_SNP [dm3] X_20285668_SNP [dm6]	A	T	3.256e^-4	0.772	INTERGENIC
3R	11586587	3R_11586587_SNP [dm3] 3R_15760865_SNP [dm6]	T	G	3.260e^-4	0.772	INTERGENIC
3L	17752561	3L_17752561_SNP [dm3] 3L_17759461_SNP [dm6]	C	T	3.263e^-4	0.772	UTR_3_PRIME CG32182 UPSTREAM CG32181 INTRON Adgf-A & 1 other
2R	14922735	2R_14922735_SNP [dm3] 2R_19035230_SNP [dm6]	C	T	3.266e^-4	0.772	DOWNSTREAM CG15115 INTERGENIC
2L	21896815	2L_21896815_SNP [dm3] 2L_21896815_SNP [dm6]	G	A	3.267e^-4	0.772	UTR_3_PRIME CG11629	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
3R	25556466	3R_25556466_SNP [dm3] 3R_29730744_SNP [dm6]	T	G	3.268e^-4	0.772	INTRON Kul	TF binding site mE1_TFBS_cad
X	15290207	X_15290207_SNP [dm3] X_15396174_SNP [dm6]	G	A	3.272e^-4	0.772	INTRON Cngl
X	19582390	X_19582390_SNP [dm3] X_19688357_SNP [dm6]	C	G	3.273e^-4	0.772	SYNONYMOUS_CODING CG14227 DOWNSTREAM Ubqn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20215420	X_20215420_SNP [dm3] X_20344393_SNP [dm6]	A	G	3.273e^-4	0.772	INTERGENIC
X	4097033	X_4097033_DEL [dm3] X_4203000_DEL [dm6]	TGTGACA	T	3.276e^-4	0.772	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	14502085	X_14502085_SNP [dm3] X_14608052_SNP [dm6]	A	G	3.282e^-4	0.772	INTRON NetA	TF binding site BDTNP1_TFBS_twi
2R	18152832	2R_18152832_SNP [dm3] 2R_22265327_SNP [dm6]	C	A	3.287e^-4	0.772	INTRON dve	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	19583492	X_19583492_DEL [dm3] X_19689459_DEL [dm6]	TCCTTTAACGCCGTGCACGC...	T	3.295e^-4	0.772	UPSTREAM CG14227 DOWNSTREAM Mer INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	6848492	2R_6848492_SNP [dm3] 2R_10960987_SNP [dm6]	C	G	3.304e^-4	0.772	INTERGENIC
2R	19390514	2R_19390514_SNP [dm3] 2R_23502991_SNP [dm6]	G	T	3.306e^-4	0.772	START_GAINED CG13559 UTR_5_PRIME CG13559	TF binding site mE1_TFBS_inv
3L	18545733	3L_18545733_SNP [dm3] 3L_18552633_SNP [dm6]	A	G	3.306e^-4	0.772	INTERGENIC
2L	16062770	2L_16062770_SNP [dm3] 2L_16062770_SNP [dm6]	G	T	3.307e^-4	0.772	INTRON beat-Ia
2R	15662049	2R_15662049_SNP [dm3] 2R_19774544_SNP [dm6]	G	A	3.312e^-4	0.772	INTERGENIC
3L	2939776	3L_2939776_SNP [dm3] 3L_2939776_SNP [dm6]	C	G	3.312e^-4	0.772	INTRON Shab
3R	13908961	3R_13908961_SNP [dm3] 3R_18083239_SNP [dm6]	T	C	3.314e^-4	0.772	DOWNSTREAM CG14317 INTERGENIC
3L	712423	3L_712423_SNP [dm3] 3L_712423_SNP [dm6]	G	C	3.315e^-4	0.772	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	18451812	2R_18451812_SNP [dm3] 2R_22564307_SNP [dm6]	A	C	3.321e^-4	0.772	NON_SYNONYMOUS_CODING dnr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20183317	X_20183317_SNP [dm3] X_20312290_SNP [dm6]	G	A	3.327e^-4	0.772	INTRON CG1504
2L	19215554	2L_19215554_SNP [dm3] 2L_19215554_SNP [dm6]	A	G	3.330e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10887042	X_10887042_SNP [dm3] X_10993009_SNP [dm6]	C	T	3.336e^-4	0.772	INTRON CG42339
2R	12627106	2R_12627106_SNP [dm3] 2R_16739601_SNP [dm6]	G	A	3.337e^-4	0.772	INTERGENIC
2R	20179361	2R_20179361_SNP [dm3] 2R_24291838_SNP [dm6]	C	T	3.337e^-4	0.772	DOWNSTREAM nvy INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	18758400	2R_18758400_SNP [dm3] 2R_22870877_SNP [dm6]	C	T	3.341e^-4	0.772	UPSTREAM CG13532 DOWNSTREAM fd59A INTERGENIC	TF binding site mE1_TFBS_cad
3L	4577273	3L_4577273_SNP [dm3] 3L_4577273_SNP [dm6]	G	T	3.341e^-4	0.772	INTRON CG42540
2L	21929787	2L_21929787_SNP [dm3] 2L_21929787_SNP [dm6]	G	A	3.343e^-4	0.772	UPSTREAM CR45334 INTERGENIC
3L	2683677	3L_2683677_SNP [dm3] 3L_2683677_SNP [dm6]	G	C	3.348e^-4	0.772	INTRON Fife
2R	16149030	2R_16149030_SNP [dm3] 2R_20261525_SNP [dm6]	T	C	3.352e^-4	0.772	UTR_3_PRIME Hsl DOWNSTREAM PCNA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19597650	2R_19597650_SNP [dm3] 2R_23710127_SNP [dm6]	C	A	3.365e^-4	0.772	UPSTREAM l_2_not DOWNSTREAM CR45326 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4567435	3L_4567435_SNP [dm3] 3L_4567435_SNP [dm6]	A	G	3.366e^-4	0.772	INTRON CG42540
2L	14679644	2L_14679644_SNP [dm3] 2L_14679644_SNP [dm6]	A	C	3.367e^-4	0.772	INTRON osp
2L	15161119	2L_15161119_SNP [dm3] 2L_15161119_SNP [dm6]	C	T	3.367e^-4	0.772	UPSTREAM CR44771 DOWNSTREAM CG4168 & 1 other INTERGENIC
3R	8929715	3R_8929715_DEL [dm3] 3R_13103993_DEL [dm6]	GC	G	3.370e^-4	0.772	INTRON timeout
3L	412023	3L_412023_SNP [dm3] 3L_412023_SNP [dm6]	G	T	3.370e^-4	0.772	INTERGENIC
X	5022446	X_5022446_SNP [dm3] X_5128413_SNP [dm6]	G	T	3.370e^-4	0.772	INTRON rg & 1 other
2R	11538193	2R_11538193_SNP [dm3] 2R_15650688_SNP [dm6]	C	T	3.377e^-4	0.772	DOWNSTREAM CG42524 INTRON CG42524
2R	11538539	2R_11538539_SNP [dm3] 2R_15651034_SNP [dm6]	G	A	3.377e^-4	0.772	DOWNSTREAM CG42524 INTRON CG42524
2R	11539659	2R_11539659_SNP [dm3] 2R_15652154_SNP [dm6]	C	T	3.377e^-4	0.772	INTRON CG42524
3R	22780339	3R_22780339_SNP [dm3] 3R_26954617_SNP [dm6]	T	C	3.381e^-4	0.772	INTRON CG6330	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17120616	2R_17120616_SNP [dm3] 2R_21233111_SNP [dm6]	G	T	3.383e^-4	0.772	INTRON ASPP
3L	18572267	3L_18572267_SNP [dm3] 3L_18579167_SNP [dm6]	G	A	3.384e^-4	0.772	INTERGENIC
3R	10112765	3R_10112765_SNP [dm3] 3R_14287043_SNP [dm6]	G	T	3.389e^-4	0.772	UPSTREAM trx INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
X	3603372	X_3603372_DEL [dm3] X_3709339_DEL [dm6]	GTCGATGGAAAAGG...	G	3.391e^-4	0.772	INTRON Rala
2L	2244028	2L_2244028_SNP [dm3] 2L_2244028_SNP [dm6]	C	T	3.398e^-4	0.772	SYNONYMOUS_CODING CG4267
3L	109064	3L_109064_SNP [dm3] 3L_109064_SNP [dm6]	A	G	3.406e^-4	0.772	INTERGENIC
2L	9562866	2L_9562866_INS [dm3] 2L_9562866_INS [dm6]	A	ATA	3.415e^-4	0.772	INTRON jp
3R	25566950	3R_25566950_SNP [dm3] 3R_29741228_SNP [dm6]	C	T	3.417e^-4	0.772	SYNONYMOUS_CODING CG1969 DOWNSTREAM CG7609
3L	14133975	3L_14133975_SNP [dm3] 3L_14140875_SNP [dm6]	T	C	3.420e^-4	0.772	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	17593717	2R_17593717_SNP [dm3] 2R_21706212_SNP [dm6]	G	A	3.424e^-4	0.772	INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	25286489	3R_25286489_SNP [dm3] 3R_29460767_SNP [dm6]	G	A	3.429e^-4	0.772	INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	11586520	3R_11586520_SNP [dm3] 3R_15760798_SNP [dm6]	T	A	3.435e^-4	0.772	INTERGENIC
2R	10549267	2R_10549267_SNP [dm3] 2R_14661762_SNP [dm6]	A	G	3.443e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17797639	3L_17797639_SNP [dm3] 3L_17804539_SNP [dm6]	A	G	3.446e^-4	0.772	NON_SYNONYMOUS_CODING CG5589 DOWNSTREAM CG32187	TF binding site mE1_TFBS_cad mE1_TFBS_eve
2L	17788075	2L_17788075_SNP [dm3] 2L_17788075_SNP [dm6]	G	C	3.461e^-4	0.772	UTR_3_PRIME CadN2
3L	17292512	3L_17292512_SNP [dm3] 3L_17299412_SNP [dm6]	T	C	3.461e^-4	0.772	INTERGENIC
X	5022421	X_5022421_SNP [dm3] X_5128388_SNP [dm6]	C	T	3.465e^-4	0.772	INTRON rg & 1 other
X	5022436	X_5022436_SNP [dm3] X_5128403_SNP [dm6]	A	G	3.465e^-4	0.772	INTRON rg & 1 other
X	2792709	X_2792709_INS [dm3] X_2898676_INS [dm6]	A	AA	3.466e^-4	0.772	INTRON kirre
X	2792711	X_2792711_DEL [dm3] X_2898678_DEL [dm6]	GAC	G	3.466e^-4	0.772	INTRON kirre
2L	16449571	2L_16449571_SNP [dm3] 2L_16449571_SNP [dm6]	T	G	3.466e^-4	0.772	SYNONYMOUS_CODING Idgf2
X	7901249	X_7901249_SNP [dm3] X_8007216_SNP [dm6]	A	G	3.468e^-4	0.772	INTRON Tbh	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	2261949	X_2261949_SNP [dm3] X_2367916_SNP [dm6]	A	T	3.475e^-4	0.772	UTR_3_PRIME PsGEF
2L	10474197	2L_10474197_SNP [dm3] 2L_10474197_SNP [dm6]	C	A	3.475e^-4	0.772	START_GAINED RluA-1 UTR_5_PRIME RluA-1 INTRON RluA-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
3R	25557863	3R_25557863_SNP [dm3] 3R_29732141_SNP [dm6]	A	G	3.479e^-4	0.772	SYNONYMOUS_CODING Kul UTR_3_PRIME Kul	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10695984	3R_10695984_SNP [dm3] 3R_14870262_SNP [dm6]	G	A	3.479e^-4	0.772	INTRON btsz
3L	2856081	3L_2856081_SNP [dm3] 3L_2856081_SNP [dm6]	T	G	3.483e^-4	0.772	INTRON CG43444
3L	20958493	3L_20958493_SNP [dm3] 3L_20965393_SNP [dm6]	C	G	3.488e^-4	0.772	NON_SYNONYMOUS_CODING CG12983 UTR_3_PRIME CG12983
X	19600188	X_19600188_SNP [dm3] X_19706155_SNP [dm6]	G	C	3.488e^-4	0.772	DOWNSTREAM meso18E INTRON CG14230	TF binding site mE1_TFBS_cad
2L	4245053	2L_4245053_SNP [dm3] 2L_4245053_SNP [dm6]	C	T	3.496e^-4	0.772	INTERGENIC
2L	22046642	2L_22046642_SNP [dm3] 2L_22046642_SNP [dm6]	T	C	3.505e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	7113004	3R_7113004_SNP [dm3] 3R_11287282_SNP [dm6]	A	T	3.510e^-4	0.772	EXON CR31386
2L	5296292	2L_5296292_SNP [dm3] 2L_5296292_SNP [dm6]	A	C	3.511e^-4	0.772	INTRON vri	TF binding site mE1_TFBS_Trl
2R	17861004	2R_17861004_SNP [dm3] 2R_21973499_SNP [dm6]	T	C	3.513e^-4	0.772	SYNONYMOUS_CODING CG9304	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	580893	3L_580893_SNP [dm3] 3L_580893_SNP [dm6]	A	G	3.518e^-4	0.772	UTR_3_PRIME hipk UPSTREAM Ppm1
2L	1034914	2L_1034914_SNP [dm3] 2L_1034914_SNP [dm6]	T	C	3.522e^-4	0.772	UPSTREAM IA-2 INTRON IA-2
3L	5777696	3L_5777696_SNP [dm3] 3L_5784596_SNP [dm6]	T	C	3.526e^-4	0.772	UTR_3_PRIME Pmi & 1 other INTRON Cralbp	TF binding site mE1_TFBS_cad
3R	12707394	3R_12707394_SNP [dm3] 3R_16881672_SNP [dm6]	A	G	3.531e^-4	0.772	INTRON iab-8	TF binding site BDTNP1_TFBS_dl
3R	15072766	3R_15072766_INS [dm3] 3R_19247044_INS [dm6]	A	ACCATAACTTAGAGGACCA...	3.543e^-4	0.772	UPSTREAM unc79 DOWNSTREAM CG5217 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3337449	2R_3337449_SNP [dm3] 2R_7449944_SNP [dm6]	A	C	3.549e^-4	0.772	UTR_3_PRIME CG11125 DOWNSTREAM CG11125 INTRON fa2h	TF binding site BDTNP1_TFBS_twi
X	5719552	X_5719552_SNP [dm3] X_5825519_SNP [dm6]	T	A	3.551e^-4	0.772	INTRON CG15765	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25569295	3R_25569295_SNP [dm3] 3R_29743573_SNP [dm6]	T	C	3.552e^-4	0.772	SYNONYMOUS_CODING CG7609	TF binding site mE1_TFBS_cad
2R	6392572	2R_6392572_SNP [dm3] 2R_10505067_SNP [dm6]	G	A	3.561e^-4	0.772	UTR_3_PRIME lola INTRON lola	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	735923	3L_735923_SNP [dm3] 3L_735923_SNP [dm6]	T	G	3.564e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	122563	3L_122563_SNP [dm3] 3L_122563_SNP [dm6]	A	G	3.568e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6497140	2L_6497140_SNP [dm3] 2L_6497140_SNP [dm6]	T	G	3.569e^-4	0.772	NON_SYNONYMOUS_CODING CG9550 DOWNSTREAM CG31638
2R	13697741	2R_13697741_SNP [dm3] 2R_17810236_SNP [dm6]	C	T	3.570e^-4	0.772	INTRON grh	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
2R	19390097	2R_19390097_SNP [dm3] 2R_23502574_SNP [dm6]	A	G	3.572e^-4	0.772	UPSTREAM CG13559 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	21306102	2L_21306102_SNP [dm3] 2L_21306102_SNP [dm6]	T	A	3.579e^-4	0.772	INTRON Mio	transposable element FlyBase
3R	19964535	3R_19964535_SNP [dm3] 3R_24138813_SNP [dm6]	G	T	3.580e^-4	0.772	INTRON Npc2f	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10456281	3L_10456281_SNP [dm3] 3L_10463181_SNP [dm6]	C	G	3.581e^-4	0.772	UPSTREAM CG32061 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	11538811	2R_11538811_SNP [dm3] 2R_15651306_SNP [dm6]	A	G	3.588e^-4	0.772	DOWNSTREAM CG42524 INTRON CG42524
2L	17958250	2L_17958250_SNP [dm3] 2L_17958250_SNP [dm6]	T	G	3.591e^-4	0.772	INTERGENIC
2R	18919852	2R_18919852_SNP [dm3] 2R_23032329_SNP [dm6]	C	T	3.593e^-4	0.772	INTRON twi & 1 other
2R	8360568	2R_8360568_SNP [dm3] 2R_12473063_SNP [dm6]	A	G	3.596e^-4	0.772	SYNONYMOUS_CODING CG8550
2L	21798476	2L_21798476_SNP [dm3] 2L_21798476_SNP [dm6]	T	C	3.600e^-4	0.772	EXON CR44269
2L	21817966	2L_21817966_SNP [dm3] 2L_21817966_SNP [dm6]	C	T	3.600e^-4	0.772	INTERGENIC
2L	21824882	2L_21824882_SNP [dm3] 2L_21824882_SNP [dm6]	A	G	3.600e^-4	0.772	INTERGENIC
2L	21840432	2L_21840432_SNP [dm3] 2L_21840432_SNP [dm6]	G	A	3.600e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	21841744	2L_21841744_SNP [dm3] 2L_21841744_SNP [dm6]	T	A	3.600e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	21844719	2L_21844719_SNP [dm3] 2L_21844719_SNP [dm6]	G	A	3.600e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	21868444	2L_21868444_SNP [dm3] 2L_21868444_SNP [dm6]	A	G	3.600e^-4	0.772	UPSTREAM CR44919 DOWNSTREAM CR44917 INTRON CR44917	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	16542022	2R_16542022_SNP [dm3] 2R_20654517_SNP [dm6]	A	C	3.603e^-4	0.772	INTRON Lrt & 1 other
3L	12998710	3L_12998710_SNP [dm3] 3L_13005610_SNP [dm6]	A	C	3.606e^-4	0.772	INTERGENIC
2L	3461945	2L_3461945_SNP [dm3] 2L_3461945_SNP [dm6]	T	C	3.608e^-4	0.772	UTR_5_PRIME CG3246 DOWNSTREAM msl-2	TF binding site mE1_TFBS_cad
3L	12023776	3L_12023776_SNP [dm3] 3L_12030676_SNP [dm6]	G	T	3.610e^-4	0.772	INTRON rols	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	21818297	2L_21818297_SNP [dm3] 2L_21818297_SNP [dm6]	G	C	3.612e^-4	0.772	INTERGENIC
2L	21848113	2L_21848113_SNP [dm3] 2L_21848113_SNP [dm6]	T	C	3.612e^-4	0.772	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	6100946	2L_6100946_SNP [dm3] 2L_6100946_SNP [dm6]	G	A	3.615e^-4	0.772	INTRON stai	TF binding site BDTNP1_TFBS_dl
2L	6912172	2L_6912172_SNP [dm3] 2L_6912172_SNP [dm6]	C	G	3.620e^-4	0.772	DOWNSTREAM Rat1 INTRON Wee1
3R	9147982	3R_9147982_SNP [dm3] 3R_13322260_SNP [dm6]	A	C	3.623e^-4	0.772	INTERGENIC
2L	9574804	2L_9574804_SNP [dm3] 2L_9574804_SNP [dm6]	A	C	3.635e^-4	0.772	SYNONYMOUS_CODING Mtpalpha	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18649908	2R_18649908_SNP [dm3] 2R_22762403_SNP [dm6]	A	G	3.638e^-4	0.772	INTRON CG42260	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8330279	3L_8330279_SNP [dm3] 3L_8337179_SNP [dm6]	C	T	3.639e^-4	0.772	INTRON Cpr66Cb
2R	11804667	2R_11804667_SNP [dm3] 2R_15917162_SNP [dm6]	T	G	3.639e^-4	0.772	DOWNSTREAM CR44373 INTRON sli	TF binding site mE1_TFBS_cad
X	8610842	X_8610842_DEL [dm3] X_8716809_DEL [dm6]	AA	A	3.639e^-4	0.772	UTR_3_PRIME CG1785 & 1 other
3L	10456338	3L_10456338_SNP [dm3] 3L_10463238_SNP [dm6]	T	C	3.650e^-4	0.772	UPSTREAM CG32061 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	13763730	2L_13763730_SNP [dm3] 2L_13763730_SNP [dm6]	A	G	3.656e^-4	0.772	INTRON TM9SF4
2R	6470201	2R_6470201_SNP [dm3] 2R_10582696_SNP [dm6]	A	T	3.659e^-4	0.772	UPSTREAM psq INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2L	3674083	2L_3674083_SNP [dm3] 2L_3674083_SNP [dm6]	T	C	3.670e^-4	0.772	INTRON CG34340
3L	15324392	3L_15324392_SNP [dm3] 3L_15331292_SNP [dm6]	A	C	3.674e^-4	0.772	UPSTREAM CR43247 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8558377	2L_8558377_SNP [dm3] 2L_8558377_SNP [dm6]	G	A	3.675e^-4	0.772	INTRON Sema-1a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	20942255	3L_20942255_SNP [dm3] 3L_20949155_SNP [dm6]	G	A	3.681e^-4	0.772	INTRON fng	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19521314	2R_19521314_SNP [dm3] 2R_23633791_SNP [dm6]	G	A	3.686e^-4	0.772	INTRON retn	TF binding site mE1_TFBS_cad
2R	4184611	2R_4184611_SNP [dm3] 2R_8297106_SNP [dm6]	C	T	3.696e^-4	0.772	UPSTREAM mir-280 INTERGENIC
3L	11430418	3L_11430418_SNP [dm3] 3L_11437318_SNP [dm6]	A	G	3.698e^-4	0.772	INTERGENIC
3L	14140892	3L_14140892_SNP [dm3] 3L_14147792_SNP [dm6]	C	A	3.705e^-4	0.772	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	14503511	X_14503511_SNP [dm3] X_14609478_SNP [dm6]	A	T	3.708e^-4	0.772	INTRON NetA
3L	18547054	3L_18547054_SNP [dm3] 3L_18553954_SNP [dm6]	T	A	3.708e^-4	0.772	INTERGENIC
2R	20161833	2R_20161833_SNP [dm3] 2R_24274310_SNP [dm6]	C	T	3.709e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	5294293	2R_5294293_SNP [dm3] 2R_9406788_SNP [dm6]	C	A	3.715e^-4	0.772	INTRON wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6103903	2L_6103903_SNP [dm3] 2L_6103903_SNP [dm6]	G	A	3.722e^-4	0.772	INTRON stai
3L	414002	3L_414002_SNP [dm3] 3L_414002_SNP [dm6]	G	C	3.731e^-4	0.772	INTERGENIC
2R	4161018	2R_4161018_SNP [dm3] 2R_8273513_SNP [dm6]	T	A	3.734e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	18152586	2R_18152586_SNP [dm3] 2R_22265081_SNP [dm6]	C	T	3.739e^-4	0.772	INTRON dve	TF binding site mE1_TFBS_inv
2R	18151129	2R_18151129_SNP [dm3] 2R_22263624_SNP [dm6]	A	G	3.739e^-4	0.772	INTRON dve
3L	12023773	3L_12023773_SNP [dm3] 3L_12030673_SNP [dm6]	G	A	3.743e^-4	0.772	INTRON rols	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	20900554	3L_20900554_SNP [dm3] 3L_20907454_SNP [dm6]	A	C	3.745e^-4	0.772	INTERGENIC
3R	9127928	3R_9127928_SNP [dm3] 3R_13302206_SNP [dm6]	C	T	3.746e^-4	0.772	NON_SYNONYMOUS_CODING CG8774 UPSTREAM CG32473
2R	18814490	2R_18814490_SNP [dm3] 2R_22926967_SNP [dm6]	T	C	3.754e^-4	0.772	SYNONYMOUS_CODING CG42678 INTRON CG42678	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	12535240	2R_12535240_SNP [dm3] 2R_16647735_SNP [dm6]	C	T	3.761e^-4	0.772	SYNONYMOUS_CODING gprs UTR_3_PRIME gprs INTRON gprs	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18053261	3R_18053261_SNP [dm3] 3R_22227539_SNP [dm6]	G	A	3.761e^-4	0.772	INTRON SKIP
2R	6018337	2R_6018337_SNP [dm3] 2R_10130832_SNP [dm6]	C	G	3.763e^-4	0.772	INTRON gem	TF binding site BDTNP1_TFBS_dl
2R	17068862	2R_17068862_SNP [dm3] 2R_21181357_SNP [dm6]	G	A	3.766e^-4	0.772	DOWNSTREAM tRNA:CR33539 INTRON Pu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6789914	X_6789914_SNP [dm3] X_6895881_SNP [dm6]	G	A	3.768e^-4	0.772	INTERGENIC
2R	15428091	2R_15428091_SNP [dm3] 2R_19540586_SNP [dm6]	C	A	3.769e^-4	0.772	INTRON sm
2R	17881548	2R_17881548_DEL [dm3] 2R_21994043_DEL [dm6]	GAA	G	3.781e^-4	0.772	INTRON CG34370
3L	14206571	3L_14206571_SNP [dm3] 3L_14213471_SNP [dm6]	G	A	3.783e^-4	0.772	INTRON nuf
2R	16838721	2R_16838721_SNP [dm3] 2R_20951216_SNP [dm6]	T	G	3.784e^-4	0.772	DOWNSTREAM CG33704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8207960	2R_8207960_SNP [dm3] 2R_12320455_SNP [dm6]	A	T	3.785e^-4	0.772	UPSTREAM CG13163 DOWNSTREAM CR44316 INTERGENIC
X	7875676	X_7875676_SNP [dm3] X_7981643_SNP [dm6]	C	T	3.799e^-4	0.772	INTRON sn
2L	11852139	2L_11852139_SNP [dm3] 2L_11852139_SNP [dm6]	T	G	3.801e^-4	0.772	NON_SYNONYMOUS_CODING Mal-B2 INTRON Pde1c
3R	19481060	3R_19481060_SNP [dm3] 3R_23655338_SNP [dm6]	A	G	3.803e^-4	0.772	INTRON CG31145
2R	17268235	2R_17268235_SNP [dm3] 2R_21380730_SNP [dm6]	G	A	3.803e^-4	0.772	INTERGENIC	TF binding site mE1_TFBS_sens
2R	1149931	2R_1149931_SNP [dm3] 2R_5262426_SNP [dm6]	G	A	3.805e^-4	0.772	INTRON d4
2L	6499760	2L_6499760_SNP [dm3] 2L_6499760_SNP [dm6]	G	A	3.808e^-4	0.772	SYNONYMOUS_CODING CG31637	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	25569695	3R_25569695_SNP [dm3] 3R_29743973_SNP [dm6]	G	A	3.809e^-4	0.772	SYNONYMOUS_CODING CG7609	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12646436	3L_12646436_SNP [dm3] 3L_12653336_SNP [dm6]	A	T	3.809e^-4	0.772	UPSTREAM CR43431 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	1550678	X_1550678_SNP [dm3] X_1656645_SNP [dm6]	A	C	3.817e^-4	0.772	INTRON Mur2B & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	901392	2L_901392_SNP [dm3] 2L_901392_SNP [dm6]	A	T	3.822e^-4	0.772	DOWNSTREAM snRNA:U1:21D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	7700765	2L_7700765_SNP [dm3] 2L_7700765_SNP [dm6]	A	T	3.824e^-4	0.772	INTRON Tep2
2L	18814375	2L_18814375_SNP [dm3] 2L_18814375_SNP [dm6]	G	T	3.826e^-4	0.772	DOWNSTREAM CG17325 & 1 other INTERGENIC
2L	21079217	2L_21079217_SNP [dm3] 2L_21079217_SNP [dm6]	C	A	3.829e^-4	0.772	INTRON tadr
2R	7067644	2R_7067644_SNP [dm3] 2R_11180139_SNP [dm6]	A	T	3.829e^-4	0.772	INTRON shn
2R	18327514	2R_18327514_SNP [dm3] 2R_22440009_SNP [dm6]	A	C	3.830e^-4	0.772	INTERGENIC
2L	4094176	2L_4094176_SNP [dm3] 2L_4094176_SNP [dm6]	G	A	3.834e^-4	0.772	INTRON ed	TF binding site BDTNP1_TFBS_twi
3L	12998735	3L_12998735_SNP [dm3] 3L_13005635_SNP [dm6]	C	A	3.848e^-4	0.772	INTERGENIC
2R	14365779	2R_14365779_SNP [dm3] 2R_18478274_SNP [dm6]	C	A	3.851e^-4	0.772	INTRON CG30116	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	3032486	2R_3032486_SNP [dm3] 2R_7144981_SNP [dm6]	A	G	3.858e^-4	0.772	INTERGENIC
3R	5374907	3R_5374907_DEL [dm3] 3R_9549185_DEL [dm6]	GG	G	3.859e^-4	0.772	INTRON mura EXON CR42549	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5744978	X_5744978_INS [dm3] X_5850945_INS [dm6]	C	CAACCAACC	3.859e^-4	0.772	INTERGENIC
3L	15251126	3L_15251126_SNP [dm3] 3L_15258026_SNP [dm6]	C	T	3.863e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21322928	3L_21322928_SNP [dm3] 3L_21329828_SNP [dm6]	C	A	3.872e^-4	0.772	SYNONYMOUS_CODING Rab26 INTRON Rab26
X	3599377	X_3599377_SNP [dm3] X_3705344_SNP [dm6]	G	T	3.874e^-4	0.772	UTR_3_PRIME Rala
3R	5722460	3R_5722460_SNP [dm3] 3R_9896738_SNP [dm6]	A	G	3.875e^-4	0.772	INTRON Glut4EF
2R	8617800	2R_8617800_SNP [dm3] 2R_12730295_SNP [dm6]	T	C	3.877e^-4	0.772	INTRON CG42663	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15134414	X_15134414_SNP [dm3] X_15240381_SNP [dm6]	T	A	3.886e^-4	0.772	INTERGENIC
3R	25885617	3R_25885617_SNP [dm3] 3R_30059895_SNP [dm6]	C	T	3.903e^-4	0.772	INTRON sima	TF binding site BDTNP1_TFBS_dl
2R	12829473	2R_12829473_SNP [dm3] 2R_16941968_SNP [dm6]	A	G	3.905e^-4	0.772	SYNONYMOUS_CODING Pkc53E
2L	19156440	2L_19156440_SNP [dm3] 2L_19156440_SNP [dm6]	T	C	3.917e^-4	0.772	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	19590304	X_19590304_SNP [dm3] X_19696271_SNP [dm6]	A	G	3.917e^-4	0.772	UPSTREAM Cdc42 INTERGENIC	transposable element FlyBase
2L	19731717	2L_19731717_DEL [dm3] 2L_19731717_DEL [dm6]	CC	C	3.917e^-4	0.772	UTR_3_PRIME Lar DOWNSTREAM CG10462 & 1 other
3R	5847177	3R_5847177_SNP [dm3] 3R_10021455_SNP [dm6]	A	G	3.926e^-4	0.772	UTR_5_PRIME Mical INTRON Mical	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	13526051	3L_13526051_SNP [dm3] 3L_13532951_SNP [dm6]	T	C	3.934e^-4	0.772	SPLICE_SITE_REGION bru-3 DOWNSTREAM bru-3 INTRON bru-3	TF binding site mE1_TFBS_HSA
2L	21830043	2L_21830043_SNP [dm3] 2L_21830043_SNP [dm6]	G	C	3.939e^-4	0.772	INTRON tsh	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	17957785	2L_17957785_SNP [dm3] 2L_17957785_SNP [dm6]	T	G	3.943e^-4	0.772	INTERGENIC
2L	21852716	2L_21852716_SNP [dm3] 2L_21852716_SNP [dm6]	A	G	3.950e^-4	0.772	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	21624392	2L_21624392_SNP [dm3] 2L_21624392_SNP [dm6]	T	A	3.951e^-4	0.772	UPSTREAM CG2201 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10026374	2R_10026374_SNP [dm3] 2R_14138869_SNP [dm6]	G	A	3.955e^-4	0.772	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	11795376	2R_11795376_SNP [dm3] 2R_15907871_SNP [dm6]	G	C	3.963e^-4	0.772	INTRON sli
2R	12392489	2R_12392489_SNP [dm3] 2R_16504984_SNP [dm6]	G	T	3.963e^-4	0.772	INTRON Sema-2a
3R	24509889	3R_24509889_SNP [dm3] 3R_28684167_SNP [dm6]	C	A	3.965e^-4	0.772	INTRON CG9990
3R	24509890	3R_24509890_SNP [dm3] 3R_28684168_SNP [dm6]	C	T	3.965e^-4	0.772	INTRON CG9990
2R	11795380	2R_11795380_SNP [dm3] 2R_15907875_SNP [dm6]	A	C	3.969e^-4	0.772	INTRON sli
3L	4675363	3L_4675363_SNP [dm3] 3L_4675363_SNP [dm6]	G	A	3.972e^-4	0.772	INTRON axo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	4675371	3L_4675371_SNP [dm3] 3L_4675371_SNP [dm6]	A	G	3.972e^-4	0.772	INTRON axo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21750660	2L_21750660_SNP [dm3] 2L_21750660_SNP [dm6]	A	G	3.982e^-4	0.772	INTRON step
3L	10456301	3L_10456301_SNP [dm3] 3L_10463201_SNP [dm6]	C	G	3.983e^-4	0.772	UPSTREAM CG32061 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	18545602	3L_18545602_INS [dm3] 3L_18552502_INS [dm6]	A	ACTAAACG	3.985e^-4	0.772	INTERGENIC
3R	1252849	3R_1252849_SNP [dm3] 3R_5427127_SNP [dm6]	G	T	3.988e^-4	0.772	SYNONYMOUS_CODING CG12147 INTRON CG14669	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7090075	2L_7090075_SNP [dm3] 2L_7090075_SNP [dm6]	A	G	3.990e^-4	0.772	INTERGENIC
2R	13193408	2R_13193408_SNP [dm3] 2R_17305903_SNP [dm6]	T	C	3.995e^-4	0.772	DOWNSTREAM CR43661 INTRON mbl
3L	4737072	3L_4737072_SNP [dm3] 3L_4737072_SNP [dm6]	G	A	3.995e^-4	0.772	INTRON RhoGEF64C
3L	487650	3L_487650_SNP [dm3] 3L_487650_SNP [dm6]	A	C	3.996e^-4	0.772	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11795375	2R_11795375_SNP [dm3] 2R_15907870_SNP [dm6]	T	A	3.996e^-4	0.772	INTRON sli
2L	855260	2L_855260_SNP [dm3] 2L_855260_SNP [dm6]	T	C	3.998e^-4	0.772	UPSTREAM CG13949 DOWNSTREAM kraken INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	12611660	2R_12611660_SNP [dm3] 2R_16724155_SNP [dm6]	A	G	4.006e^-4	0.772	INTRON CG30463
3R	7120543	3R_7120543_SNP [dm3] 3R_11294821_SNP [dm6]	A	T	4.010e^-4	0.772	INTRON CR31386
2R	12179893	2R_12179893_SNP [dm3] 2R_16292388_SNP [dm6]	T	C	4.011e^-4	0.772	SYNONYMOUS_CODING CG7747 UPSTREAM CR43730 DOWNSTREAM CG30100 & 1 other
3L	7019850	3L_7019850_SNP [dm3] 3L_7026750_SNP [dm6]	G	C	4.023e^-4	0.772	UTR_5_PRIME CG17744 INTRON Mp
2L	7488033	2L_7488033_SNP [dm3] 2L_7488033_SNP [dm6]	A	C	4.030e^-4	0.772	INTRON Ziz
2L	5777811	2L_5777811_SNP [dm3] 2L_5777811_SNP [dm6]	G	C	4.031e^-4	0.772	INTRON CG9171	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	17605568	2L_17605568_INS [dm3] 2L_17605568_INS [dm6]	T	TTTTTTGT	4.034e^-4	0.772	DOWNSTREAM CR44412 INTERGENIC
2R	14294843	2R_14294843_SNP [dm3] 2R_18407338_SNP [dm6]	C	T	4.039e^-4	0.772	SYNONYMOUS_CODING GstE7 UPSTREAM GstE8 DOWNSTREAM GstE6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	4794239	X_4794239_SNP [dm3] X_4900206_SNP [dm6]	A	T	4.041e^-4	0.772	INTRON CG42594
3R	17383587	3R_17383587_SNP [dm3] 3R_21557865_SNP [dm6]	T	C	4.048e^-4	0.772	UPSTREAM slou INTERGENIC	regulatory region FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	796590	3L_796590_SNP [dm3] 3L_796590_SNP [dm6]	A	G	4.049e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	25556919	3R_25556919_SNP [dm3] 3R_29731197_SNP [dm6]	T	A	4.053e^-4	0.772	NON_SYNONYMOUS_CODING Kul UTR_3_PRIME Kul	TF binding site mE1_TFBS_cad
3R	9188922	3R_9188922_SNP [dm3] 3R_13363200_SNP [dm6]	A	C	4.069e^-4	0.772	INTRON poly
X	20215452	X_20215452_INS [dm3] X_20344425_INS [dm6]	AC	TTATGCCG	4.082e^-4	0.772	INTERGENIC
2L	9558318	2L_9558318_SNP [dm3] 2L_9558318_SNP [dm6]	C	T	4.082e^-4	0.772	INTRON jp
2L	6090262	2L_6090262_SNP [dm3] 2L_6090262_SNP [dm6]	T	C	4.083e^-4	0.772	INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
X	2244424	X_2244424_SNP [dm3] X_2350391_SNP [dm6]	C	T	4.086e^-4	0.772	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
X	18462720	X_18462720_SNP [dm3] X_18568687_SNP [dm6]	A	T	4.097e^-4	0.772	INTRON Bx	TF binding site mE1_TFBS_chinmo
X	6481542	X_6481542_DEL [dm3] X_6587509_DEL [dm6]	AAAA	T	4.101e^-4	0.772	INTRON CG34417
2L	11690274	2L_11690274_SNP [dm3] 2L_11690274_SNP [dm6]	T	A	4.107e^-4	0.772	INTERGENIC
2R	17738659	2R_17738659_INS [dm3] 2R_21851154_INS [dm6]	A	ACCTG	4.107e^-4	0.772	INTERGENIC
3R	24564590	3R_24564590_SNP [dm3] 3R_28738868_SNP [dm6]	G	A	4.108e^-4	0.772	INTRON AstA-R2
2L	10828904	2L_10828904_SNP [dm3] 2L_10828904_SNP [dm6]	C	A	4.110e^-4	0.772	INTRON Nos
3L	17797396	3L_17797396_SNP [dm3] 3L_17804296_SNP [dm6]	A	G	4.117e^-4	0.772	SYNONYMOUS_CODING CG5589 DOWNSTREAM CG32187	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	21848438	2L_21848438_SNP [dm3] 2L_21848438_SNP [dm6]	T	C	4.120e^-4	0.772	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11799195	2R_11799195_SNP [dm3] 2R_15911690_SNP [dm6]	G	C	4.120e^-4	0.772	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4118010	2L_4118010_SNP [dm3] 2L_4118010_SNP [dm6]	T	A	4.122e^-4	0.772	INTERGENIC
3R	18481921	3R_18481921_SNP [dm3] 3R_22656199_SNP [dm6]	A	G	4.129e^-4	0.772	INTRON CG45058
3L	6688177	3L_6688177_SNP [dm3] 3L_6695077_SNP [dm6]	G	C	4.130e^-4	0.772	INTRON SP1173
3R	25550897	3R_25550897_INS [dm3] 3R_29725175_INS [dm6]	T	TGGT	4.140e^-4	0.772	UPSTREAM Kul & 1 other DOWNSTREAM Pcd INTRON CG18731	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
3L	3004072	3L_3004072_DEL [dm3] 3L_3004072_DEL [dm6]	ACATTCA	A	4.140e^-4	0.772	INTRON FMRFaR
2L	22076774	2L_22076774_SNP [dm3] 2L_22076774_SNP [dm6]	C	T	4.141e^-4	0.772	INTERGENIC
2R	12135715	2R_12135715_SNP [dm3] 2R_16248210_SNP [dm6]	T	A	4.145e^-4	0.772	INTRON CngA
2L	10474033	2L_10474033_SNP [dm3] 2L_10474033_SNP [dm6]	G	A	4.152e^-4	0.772	INTRON RluA-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
3L	4393843	3L_4393843_SNP [dm3] 3L_4393843_SNP [dm6]	C	T	4.155e^-4	0.772	INTRON slow
3R	6977431	3R_6977431_SNP [dm3] 3R_11151709_SNP [dm6]	T	C	4.161e^-4	0.772	UTR_3_PRIME Ugt86Di DOWNSTREAM Ugt86Di
3R	15072750	3R_15072750_SNP [dm3] 3R_19247028_SNP [dm6]	C	G	4.163e^-4	0.772	UPSTREAM unc79 DOWNSTREAM CG5217 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5569469	X_5569469_SNP [dm3] X_5675436_SNP [dm6]	G	T	4.170e^-4	0.772	NON_SYNONYMOUS_CODING Tre1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5847869	3R_5847869_SNP [dm3] 3R_10022147_SNP [dm6]	C	G	4.172e^-4	0.772	UPSTREAM Mical DOWNSTREAM CG31407 INTRON Mical	TF binding site mE1_TFBS_inv
3R	9565573	3R_9565573_SNP [dm3] 3R_13739851_SNP [dm6]	G	A	4.177e^-4	0.772	INTRON CG34383	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14420411	3L_14420411_SNP [dm3] 3L_14427311_SNP [dm6]	T	C	4.179e^-4	0.772	UTR_5_PRIME bbg INTRON bbg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	12543724	2R_12543724_SNP [dm3] 2R_16656219_SNP [dm6]	G	A	4.197e^-4	0.772	SYNONYMOUS_CODING Picot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	22175015	2L_22175015_SNP [dm3] 2L_22175015_SNP [dm6]	C	T	4.204e^-4	0.772	UPSTREAM CG3635 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	19410341	2R_19410341_SNP [dm3] 2R_23522818_SNP [dm6]	A	C	4.212e^-4	0.772	INTRON RabX1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_sens
X	18180995	X_18180995_SNP [dm3] X_18286962_SNP [dm6]	T	C	4.214e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	2737769	X_2737769_SNP [dm3] X_2843736_SNP [dm6]	A	G	4.217e^-4	0.772	INTRON kirre
X	18309144	X_18309144_SNP [dm3] X_18415111_SNP [dm6]	C	T	4.219e^-4	0.772	UPSTREAM CG15056 INTERGENIC	transposable element FlyBase

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.734e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.06275

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	7.1431	0.0281

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2178 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	3547796	3L_3547796_SNP [dm3] 3L_3547796_SNP [dm6]	T	A	1.764e^-8	0.033	INTRON Eip63E
3L	3547802	3L_3547802_SNP [dm3] 3L_3547802_SNP [dm6]	C	A	1.609e^-7	0.151	INTRON Eip63E
2R	18278806	2R_18278806_SNP [dm3] 2R_22391301_SNP [dm6]	A	G	3.040e^-7	0.17	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3547801	3L_3547801_SNP [dm3] 3L_3547801_SNP [dm6]	T	C	3.625e^-7	0.17	INTRON Eip63E
3L	3547769	3L_3547769_SNP [dm3] 3L_3547769_SNP [dm6]	T	C	4.752e^-7	0.178	INTRON Eip63E
2R	19024849	2R_19024849_SNP [dm3] 2R_23137326_SNP [dm6]	T	G	7.853e^-7	0.245	INTERGENIC
X	15135061	X_15135061_SNP [dm3] X_15241028_SNP [dm6]	G	C	1.763e^-6	0.426	INTERGENIC
2R	17267393	2R_17267393_SNP [dm3] 2R_21379888_SNP [dm6]	A	C	1.817e^-6	0.426	UPSTREAM cv-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	9562194	2L_9562194_SNP [dm3] 2L_9562194_SNP [dm6]	T	C	2.209e^-6	0.429	INTRON jp
3L	3547752	3L_3547752_INS [dm3] 3L_3547752_INS [dm6]	A	AAA	2.373e^-6	0.429	INTRON Eip63E
2R	11543417	2R_11543417_SNP [dm3] 2R_15655912_SNP [dm6]	T	G	2.517e^-6	0.429	INTRON CG42524
3L	3547671	3L_3547671_SNP [dm3] 3L_3547671_SNP [dm6]	T	C	2.853e^-6	0.43	INTRON Eip63E
3L	19472074	3L_19472074_SNP [dm3] 3L_19478974_SNP [dm6]	G	A	2.982e^-6	0.43	UPSTREAM CR32207 DOWNSTREAM CR42842 INTERGENIC
X	21063578	X_21063578_SNP [dm3] X_21192551_SNP [dm6]	G	A	3.375e^-6	0.452	UPSTREAM CG14579 INTERGENIC
2R	17060713	2R_17060713_SNP [dm3] 2R_21173208_SNP [dm6]	C	T	5.395e^-6	0.674	INTRON Xpd	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	11543428	2R_11543428_SNP [dm3] 2R_15655923_SNP [dm6]	C	T	5.873e^-6	0.688	INTRON CG42524
3R	11511708	3R_11511708_SNP [dm3] 3R_15685986_SNP [dm6]	C	T	6.702e^-6	0.688	INTRON pxb	TF binding site BDTNP1_TFBS_hb
2L	9562332	2L_9562332_SNP [dm3] 2L_9562332_SNP [dm6]	T	A	6.737e^-6	0.688	INTRON jp
3L	3547646	3L_3547646_SNP [dm3] 3L_3547646_SNP [dm6]	C	T	6.974e^-6	0.688	INTRON Eip63E
3L	3547744	3L_3547744_SNP [dm3] 3L_3547744_SNP [dm6]	A	T	9.246e^-6	0.828	INTRON Eip63E
X	3602021	X_3602021_SNP [dm3] X_3707988_SNP [dm6]	G	A	9.751e^-6	0.828	INTRON Rala
2R	16289158	2R_16289158_DEL [dm3] 2R_20401653_DEL [dm6]	CCG	C	1.110e^-5	0.828	INTERGENIC
2R	16289150	2R_16289150_SNP [dm3] 2R_20401645_SNP [dm6]	G	A	1.189e^-5	0.828	INTERGENIC
3L	9726588	3L_9726588_SNP [dm3] 3L_9733488_SNP [dm6]	G	A	1.228e^-5	0.828	DOWNSTREAM mir-4986 & 1 other INTRON CG6749
3R	15072981	3R_15072981_SNP [dm3] 3R_19247259_SNP [dm6]	T	C	1.320e^-5	0.828	UTR_3_PRIME CG5217	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	11328142	X_11328142_SNP [dm3] X_11434109_SNP [dm6]	G	A	1.340e^-5	0.828	DOWNSTREAM Evi5 INTRON Evi5
2L	12586539	2L_12586539_SNP [dm3] 2L_12586539_SNP [dm6]	G	T	1.403e^-5	0.828	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	2377907	3L_2377907_SNP [dm3] 3L_2377907_SNP [dm6]	T	A	1.442e^-5	0.828	UTR_5_PRIME CG45186 UPSTREAM CG15877 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8613042	2L_8613042_SNP [dm3] 2L_8613042_SNP [dm6]	C	T	1.467e^-5	0.828	INTRON Sema-1a
3L	4606376	3L_4606376_SNP [dm3] 3L_4606376_SNP [dm6]	C	G	1.503e^-5	0.828	INTRON Src64B
X	5462305	X_5462305_INS [dm3] X_5568272_INS [dm6]	A	ACACA	1.570e^-5	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	7057433	2L_7057433_SNP [dm3] 2L_7057433_SNP [dm6]	C	T	1.577e^-5	0.828	SYNONYMOUS_CODING Mnn1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16582438	X_16582438_SNP [dm3] X_16688405_SNP [dm6]	G	A	1.605e^-5	0.828	UPSTREAM Sep4 INTRON Sep4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18045512	2R_18045512_SNP [dm3] 2R_22158007_SNP [dm6]	A	T	1.612e^-5	0.828	INTRON a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9726892	3L_9726892_SNP [dm3] 3L_9733792_SNP [dm6]	G	A	1.702e^-5	0.828	NON_SYNONYMOUS_CODING CG6749 UPSTREAM mir-4986 DOWNSTREAM CG42268
3L	9726895	3L_9726895_SNP [dm3] 3L_9733795_SNP [dm6]	T	G	1.702e^-5	0.828	NON_SYNONYMOUS_CODING CG6749 UPSTREAM mir-4986 DOWNSTREAM CG42268
X	18652088	X_18652088_INS [dm3] X_18758055_INS [dm6]	T	TT	1.773e^-5	0.828	INTERGENIC
2R	13731338	2R_13731338_SNP [dm3] 2R_17843833_SNP [dm6]	T	A	1.895e^-5	0.828	UTR_5_PRIME olf186-F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	20955871	3L_20955871_SNP [dm3] 3L_20962771_SNP [dm6]	C	T	2.054e^-5	0.828	UTR_3_PRIME CG12983 UPSTREAM CG10587	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	17784937	3L_17784937_SNP [dm3] 3L_17791837_SNP [dm6]	C	A	2.090e^-5	0.828	UPSTREAM CG42815 DOWNSTREAM CG42816 INTERGENIC
3L	20955869	3L_20955869_SNP [dm3] 3L_20962769_SNP [dm6]	G	T	2.096e^-5	0.828	UTR_3_PRIME CG12983 UPSTREAM CG10587	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	4363255	3R_4363255_SNP [dm3] 3R_8537533_SNP [dm6]	A	G	2.122e^-5	0.828	INTERGENIC
2R	19390102	2R_19390102_SNP [dm3] 2R_23502579_SNP [dm6]	G	T	2.144e^-5	0.828	UPSTREAM CG13559 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	16582512	X_16582512_SNP [dm3] X_16688479_SNP [dm6]	C	T	2.288e^-5	0.828	UPSTREAM Sep4 INTRON Sep4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15161217	2L_15161217_SNP [dm3] 2L_15161217_SNP [dm6]	T	G	2.289e^-5	0.828	DOWNSTREAM CG4168 & 1 other INTERGENIC
3L	9726894	3L_9726894_SNP [dm3] 3L_9733794_SNP [dm6]	C	T	2.336e^-5	0.828	SYNONYMOUS_CODING CG6749 UPSTREAM mir-4986 DOWNSTREAM CG42268
2R	17267361	2R_17267361_SNP [dm3] 2R_21379856_SNP [dm6]	A	T	2.402e^-5	0.828	UPSTREAM cv-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	7067580	2L_7067580_SNP [dm3] 2L_7067580_SNP [dm6]	T	G	2.425e^-5	0.828	UPSTREAM CG11289 INTERGENIC
2L	9883398	2L_9883398_SNP [dm3] 2L_9883398_SNP [dm6]	A	T	2.509e^-5	0.828	INTRON nAChRalpha6
3L	10208904	3L_10208904_SNP [dm3] 3L_10215804_SNP [dm6]	A	G	2.515e^-5	0.828	SYNONYMOUS_CODING CG8065
2L	9567366	2L_9567366_SNP [dm3] 2L_9567366_SNP [dm6]	C	G	2.573e^-5	0.828	UPSTREAM jp DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	18055527	2R_18055527_SNP [dm3] 2R_22168022_SNP [dm6]	C	T	2.635e^-5	0.828	INTRON a	TF binding site mE1_TFBS_chinmo
2L	6497140	2L_6497140_SNP [dm3] 2L_6497140_SNP [dm6]	T	G	2.638e^-5	0.828	NON_SYNONYMOUS_CODING CG9550 DOWNSTREAM CG31638
2R	19397731	2R_19397731_SNP [dm3] 2R_23510208_SNP [dm6]	G	A	2.690e^-5	0.828	INTERGENIC
3L	10208898	3L_10208898_SNP [dm3] 3L_10215798_SNP [dm6]	A	G	2.798e^-5	0.828	SYNONYMOUS_CODING CG8065
2L	9571394	2L_9571394_SNP [dm3] 2L_9571394_SNP [dm6]	G	A	2.906e^-5	0.828	UTR_5_PRIME CG3838 INTRON CG3838
2R	11540657	2R_11540657_SNP [dm3] 2R_15653152_SNP [dm6]	G	C	2.919e^-5	0.828	INTRON CG42524
2R	12539181	2R_12539181_SNP [dm3] 2R_16651676_SNP [dm6]	G	C	3.017e^-5	0.828	SYNONYMOUS_CODING Amyrel DOWNSTREAM gprs	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2290239	3L_2290239_DEL [dm3] 3L_2290239_DEL [dm6]	GCGCCAAA	G	3.049e^-5	0.828	INTRON MsR2
3L	2290235	3L_2290235_SNP [dm3] 3L_2290235_SNP [dm6]	G	A	3.057e^-5	0.828	INTRON MsR2
2R	8338654	2R_8338654_SNP [dm3] 2R_12451149_SNP [dm6]	C	A	3.085e^-5	0.828	SYNONYMOUS_CODING Dyb INTRON Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	11540448	2R_11540448_SNP [dm3] 2R_15652943_SNP [dm6]	C	G	3.152e^-5	0.828	INTRON CG42524
X	1718697	X_1718697_SNP [dm3] X_1824664_SNP [dm6]	A	T	3.255e^-5	0.828	UPSTREAM CG42666 INTRON CG42666	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	12069513	2R_12069513_SNP [dm3] 2R_16182008_SNP [dm6]	G	A	3.290e^-5	0.828	UTR_5_PRIME Lis-1	TF binding site mE1_TFBS_HSA
X	20527420	X_20527420_DEL [dm3] X_20656393_DEL [dm6]	TC	T	3.351e^-5	0.828	UPSTREAM Cyp6v1 DOWNSTREAM CR45466 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	19467940	3L_19467940_SNP [dm3] 3L_19474840_SNP [dm6]	C	T	3.409e^-5	0.828	DOWNSTREAM CG18294 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3L	5706345	3L_5706345_SNP [dm3] 3L_5713245_SNP [dm6]	A	T	3.445e^-5	0.828	UPSTREAM CG44521 INTRON sif
3L	12084593	3L_12084593_SNP [dm3] 3L_12091493_SNP [dm6]	A	C	3.508e^-5	0.828	INTERGENIC
3L	17796368	3L_17796368_SNP [dm3] 3L_17803268_SNP [dm6]	A	G	3.569e^-5	0.828	SYNONYMOUS_CODING CG5589 UPSTREAM NUCB1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	18646207	X_18646207_SNP [dm3] X_18752174_SNP [dm6]	C	T	3.594e^-5	0.828	INTERGENIC
2L	9571449	2L_9571449_SNP [dm3] 2L_9571449_SNP [dm6]	G	A	3.628e^-5	0.828	INTRON CG3838
3L	2290228	3L_2290228_SNP [dm3] 3L_2290228_SNP [dm6]	T	A	3.629e^-5	0.828	INTRON MsR2
2L	3573875	2L_3573875_SNP [dm3] 2L_3573875_SNP [dm6]	C	A	3.743e^-5	0.828	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11728415	3L_11728415_SNP [dm3] 3L_11735315_SNP [dm6]	C	T	3.779e^-5	0.828	UTR_3_PRIME CG6024 DOWNSTREAM CG6024
2R	19024800	2R_19024800_SNP [dm3] 2R_23137277_SNP [dm6]	G	A	3.839e^-5	0.828	INTERGENIC
3R	12689072	3R_12689072_SNP [dm3] 3R_16863350_SNP [dm6]	G	A	3.885e^-5	0.828	INTRON iab-8
X	16847578	X_16847578_SNP [dm3] X_16953545_SNP [dm6]	T	C	3.970e^-5	0.828	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4606691	3L_4606691_SNP [dm3] 3L_4606691_SNP [dm6]	T	G	4.014e^-5	0.828	INTRON Src64B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11511800	3R_11511800_SNP [dm3] 3R_15686078_SNP [dm6]	C	T	4.019e^-5	0.828	INTRON pxb	TF binding site BDTNP1_TFBS_hb
X	14607970	X_14607970_SNP [dm3] X_14713937_SNP [dm6]	C	T	4.027e^-5	0.828	INTRON NetB
3L	12415376	3L_12415376_SNP [dm3] 3L_12422276_SNP [dm6]	A	G	4.062e^-5	0.828	DOWNSTREAM toe INTERGENIC
2R	7966851	2R_7966851_SNP [dm3] 2R_12079346_SNP [dm6]	T	A	4.101e^-5	0.828	UTR_5_PRIME CG8888
3L	3547681	3L_3547681_SNP [dm3] 3L_3547681_SNP [dm6]	C	G	4.145e^-5	0.828	INTRON Eip63E
X	1718768	X_1718768_DEL [dm3] X_1824735_DEL [dm6]	CGATTC	C	4.151e^-5	0.828	UPSTREAM CG42666 INTRON CG42666	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9683653	3L_9683653_SNP [dm3] 3L_9690553_SNP [dm6]	G	A	4.220e^-5	0.828	INTRON CG6767
2R	13741016	2R_13741016_SNP [dm3] 2R_17853511_SNP [dm6]	T	C	4.253e^-5	0.828	SYNONYMOUS_CODING CG30323 INTRON olf186-F
2L	6412067	2L_6412067_SNP [dm3] 2L_6412067_SNP [dm6]	A	G	4.272e^-5	0.828	UPSTREAM CG13982 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17934212	2R_17934212_SNP [dm3] 2R_22046707_SNP [dm6]	A	G	4.337e^-5	0.828	INTERGENIC
3L	10530001	3L_10530001_SNP [dm3] 3L_10536901_SNP [dm6]	T	A	4.403e^-5	0.828	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15144644	X_15144644_SNP [dm3] X_15250611_SNP [dm6]	G	T	4.432e^-5	0.828	INTERGENIC
X	2926734	X_2926734_SNP [dm3] X_3032701_SNP [dm6]	C	A	4.441e^-5	0.828	INTRON kirre
3R	5129982	3R_5129982_SNP [dm3] 3R_9304260_SNP [dm6]	C	G	4.483e^-5	0.828	INTRON CG8861
2L	19742803	2L_19742803_SNP [dm3] 2L_19742803_SNP [dm6]	A	C	4.494e^-5	0.828	UPSTREAM CR44906 DOWNSTREAM CG10631 INTERGENIC
3L	2996238	3L_2996238_INS [dm3] 3L_2996238_INS [dm6]	C	CGTTAACAC	4.507e^-5	0.828	DOWNSTREAM CG2113 INTERGENIC
3R	4354841	3R_4354841_SNP [dm3] 3R_8529119_SNP [dm6]	C	G	4.517e^-5	0.828	UPSTREAM CG11741 INTERGENIC	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	17552598	3R_17552598_SNP [dm3] 3R_21726876_SNP [dm6]	A	T	4.538e^-5	0.828	INTERGENIC
3R	13251182	3R_13251182_SNP [dm3] 3R_17425460_SNP [dm6]	T	A	4.561e^-5	0.828	UPSTREAM CG5873 INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	19564919	2R_19564919_SNP [dm3] 2R_23677396_SNP [dm6]	C	G	4.580e^-5	0.828	INTRON Pde8	TF binding site mE1_TFBS_cad
3R	23777355	3R_23777355_SNP [dm3] 3R_27951633_SNP [dm6]	C	T	4.621e^-5	0.828	SYNONYMOUS_CODING Gp93 DOWNSTREAM CG4951	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17474253	2R_17474253_SNP [dm3] 2R_21586748_SNP [dm6]	G	T	4.667e^-5	0.828	INTERGENIC	TF binding site mE1_TFBS_cad
3R	17541520	3R_17541520_SNP [dm3] 3R_21715798_SNP [dm6]	C	G	4.684e^-5	0.828	INTRON CG31176
3L	602803	3L_602803_SNP [dm3] 3L_602803_SNP [dm6]	A	G	5.051e^-5	0.828	INTRON CG13893
2L	9560494	2L_9560494_SNP [dm3] 2L_9560494_SNP [dm6]	G	T	5.057e^-5	0.828	UPSTREAM jp INTRON jp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	4150488	2R_4150488_SNP [dm3] 2R_8262983_SNP [dm6]	T	C	5.096e^-5	0.828	NON_SYNONYMOUS_CODING CG12126 DOWNSTREAM CG30376
X	21183165	X_21183165_SNP [dm3] X_21312138_SNP [dm6]	T	A	5.224e^-5	0.828	SYNONYMOUS_CODING CG1801
X	20244593	X_20244593_SNP [dm3] X_20373566_SNP [dm6]	C	G	5.232e^-5	0.828	INTERGENIC
3R	11586547	3R_11586547_SNP [dm3] 3R_15760825_SNP [dm6]	G	A	5.381e^-5	0.828	INTERGENIC
2R	19373001	2R_19373001_DEL [dm3] 2R_23485478_DEL [dm6]	TT	T	5.518e^-5	0.828	INTRON CG43795
2R	18453411	2R_18453411_SNP [dm3] 2R_22565906_SNP [dm6]	G	A	5.530e^-5	0.828	SYNONYMOUS_CODING dnr1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8638979	3R_8638979_SNP [dm3] 3R_12813257_SNP [dm6]	C	G	5.539e^-5	0.828	INTRON CG31345
3L	14097813	3L_14097813_SNP [dm3] 3L_14104713_SNP [dm6]	A	C	5.714e^-5	0.828	SYNONYMOUS_CODING Sox21a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	21192658	X_21192658_INS [dm3] X_21321631_INS [dm6]	G	GAG	5.731e^-5	0.828	SPLICE_SITE_REGION Dd INTRON Dd	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19304817	2R_19304817_SNP [dm3] 2R_23417294_SNP [dm6]	A	G	5.820e^-5	0.828	DOWNSTREAM CG30411 INTRON CG9812
2L	11409165	2L_11409165_SNP [dm3] 2L_11409165_SNP [dm6]	T	A	5.840e^-5	0.828	INTERGENIC	regulatory region REDfly_CRMs
2L	9915180	2L_9915180_SNP [dm3] 2L_9915180_SNP [dm6]	C	A	5.886e^-5	0.828	UPSTREAM yip2 DOWNSTREAM Srp54 INTERGENIC
2R	18815010	2R_18815010_SNP [dm3] 2R_22927487_SNP [dm6]	A	G	5.943e^-5	0.828	INTRON CG42678	TF binding site mE1_TFBS_cad
2L	9562155	2L_9562155_INS [dm3] 2L_9562155_INS [dm6]	A	ATATTCCTTAACGACA...	5.955e^-5	0.828	INTRON jp
X	20527090	X_20527090_DEL [dm3] X_20656063_DEL [dm6]	AT	A	6.024e^-5	0.828	DOWNSTREAM CR45466 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10508777	2R_10508777_SNP [dm3] 2R_14621272_SNP [dm6]	A	T	6.191e^-5	0.828	UTR_5_PRIME CG12863 UPSTREAM Uhg5 & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_zfh1
X	20267857	X_20267857_SNP [dm3] X_20396830_SNP [dm6]	C	T	6.286e^-5	0.828	INTRON HERC2	TF binding site BDTNP1_TFBS_da
3L	413923	3L_413923_SNP [dm3] 3L_413923_SNP [dm6]	A	G	6.300e^-5	0.828	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	12409735	3L_12409735_SNP [dm3] 3L_12416635_SNP [dm6]	C	T	6.328e^-5	0.828	SYNONYMOUS_CODING ArfGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11409111	2L_11409111_DEL [dm3] 2L_11409111_DEL [dm6]	AA	A	6.415e^-5	0.828	INTERGENIC	regulatory region REDfly_CRMs
2L	11409118	2L_11409118_DEL [dm3] 2L_11409118_DEL [dm6]	AGT	A	6.415e^-5	0.828	INTERGENIC	regulatory region REDfly_CRMs
2L	11409142	2L_11409142_MNP [dm3] 2L_11409142_MNP [dm6]	ATT	TAC	6.415e^-5	0.828	INTERGENIC	regulatory region REDfly_CRMs
2L	11409147	2L_11409147_INS [dm3] 2L_11409147_INS [dm6]	T	TGCGTGG	6.415e^-5	0.828	INTERGENIC	regulatory region REDfly_CRMs
2L	11409153	2L_11409153_DEL [dm3] 2L_11409153_DEL [dm6]	TACA	T	6.415e^-5	0.828	INTERGENIC	regulatory region REDfly_CRMs
2L	11409171	2L_11409171_SNP [dm3] 2L_11409171_SNP [dm6]	T	A	6.415e^-5	0.828	INTERGENIC	regulatory region REDfly_CRMs
3R	17541406	3R_17541406_SNP [dm3] 3R_21715684_SNP [dm6]	G	T	6.417e^-5	0.828	INTRON CG31176
2L	18784638	2L_18784638_SNP [dm3] 2L_18784638_SNP [dm6]	A	C	6.487e^-5	0.828	INTRON ham	TF binding site BDTNP1_TFBS_dl
2R	11543513	2R_11543513_SNP [dm3] 2R_15656008_SNP [dm6]	G	A	6.556e^-5	0.828	INTRON CG42524
3R	15405957	3R_15405957_SNP [dm3] 3R_19580235_SNP [dm6]	T	A	6.603e^-5	0.828	INTRON Dys
2L	8575887	2L_8575887_SNP [dm3] 2L_8575887_SNP [dm6]	T	A	6.628e^-5	0.828	INTRON Sema-1a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15405944	3R_15405944_SNP [dm3] 3R_19580222_SNP [dm6]	A	T	6.628e^-5	0.828	INTRON Dys
3L	9651476	3L_9651476_SNP [dm3] 3L_9658376_SNP [dm6]	T	G	6.721e^-5	0.828	INTRON fry & 1 other	TF binding site mE1_TFBS_inv
X	5617037	X_5617037_SNP [dm3] X_5723004_SNP [dm6]	C	A	6.745e^-5	0.828	SYNONYMOUS_CODING CG32758	TF binding site mE1_TFBS_cad
2L	11409160	2L_11409160_SNP [dm3] 2L_11409160_SNP [dm6]	C	A	6.810e^-5	0.828	INTERGENIC	regulatory region REDfly_CRMs
2L	9914936	2L_9914936_SNP [dm3] 2L_9914936_SNP [dm6]	A	T	6.974e^-5	0.828	UTR_3_PRIME Srp54 UPSTREAM yip2
3R	8645510	3R_8645510_SNP [dm3] 3R_12819788_SNP [dm6]	G	C	7.058e^-5	0.828	INTERGENIC
3L	3547729	3L_3547729_SNP [dm3] 3L_3547729_SNP [dm6]	A	T	7.072e^-5	0.828	INTRON Eip63E
2L	16062975	2L_16062975_SNP [dm3] 2L_16062975_SNP [dm6]	G	A	7.080e^-5	0.828	INTRON beat-Ia
X	5554553	X_5554553_SNP [dm3] X_5660520_SNP [dm6]	G	A	7.090e^-5	0.828	SYNONYMOUS_CODING CG42265	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9583087	2L_9583087_SNP [dm3] 2L_9583087_SNP [dm6]	A	T	7.117e^-5	0.828	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	4205741	3R_4205741_SNP [dm3] 3R_8380019_SNP [dm6]	A	T	7.184e^-5	0.828	INTRON CG45263
2R	17268235	2R_17268235_SNP [dm3] 2R_21380730_SNP [dm6]	G	A	7.212e^-5	0.828	INTERGENIC	TF binding site mE1_TFBS_sens
X	19423280	X_19423280_SNP [dm3] X_19529247_SNP [dm6]	G	C	7.228e^-5	0.828	SYNONYMOUS_CODING CoRest	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13259372	2R_13259372_SNP [dm3] 2R_17371867_SNP [dm6]	C	T	7.295e^-5	0.828	INTRON mbl
3R	5963561	3R_5963561_SNP [dm3] 3R_10137839_SNP [dm6]	T	C	7.351e^-5	0.828	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	9485252	2L_9485252_SNP [dm3] 2L_9485252_SNP [dm6]	A	G	7.396e^-5	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	19469696	2L_19469696_SNP [dm3] 2L_19469696_SNP [dm6]	T	C	7.422e^-5	0.828	DOWNSTREAM CR45723 EXON CR45722
X	1171415	X_1171415_SNP [dm3] X_1277382_SNP [dm6]	T	G	7.482e^-5	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	22110349	3R_22110349_SNP [dm3] 3R_26284627_SNP [dm6]	G	T	7.489e^-5	0.828	INTERGENIC
3L	12084611	3L_12084611_SNP [dm3] 3L_12091511_SNP [dm6]	T	G	7.652e^-5	0.828	INTERGENIC
3L	2290215	3L_2290215_SNP [dm3] 3L_2290215_SNP [dm6]	G	A	7.657e^-5	0.828	INTRON MsR2
2R	15662049	2R_15662049_SNP [dm3] 2R_19774544_SNP [dm6]	G	A	7.692e^-5	0.828	INTERGENIC
2L	20753866	2L_20753866_SNP [dm3] 2L_20753866_SNP [dm6]	G	A	7.741e^-5	0.828	SYNONYMOUS_CODING Ns4 DOWNSTREAM CG9323	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5777811	2L_5777811_SNP [dm3] 2L_5777811_SNP [dm6]	G	C	7.753e^-5	0.828	INTRON CG9171	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	7113085	3R_7113085_SNP [dm3] 3R_11287363_SNP [dm6]	T	A	7.768e^-5	0.828	EXON CR31386
3L	3261576	3L_3261576_SNP [dm3] 3L_3261576_SNP [dm6]	A	G	7.776e^-5	0.828	INTRON ckd
X	7706831	X_7706831_SNP [dm3] X_7812798_SNP [dm6]	C	T	7.796e^-5	0.828	INTERGENIC
X	11328129	X_11328129_DEL [dm3] X_11434096_DEL [dm6]	ATC	A	7.820e^-5	0.828	DOWNSTREAM Evi5 INTRON Evi5
2L	6594142	2L_6594142_SNP [dm3] 2L_6594142_SNP [dm6]	C	T	7.832e^-5	0.828	INTRON CG11319	TF binding site BDTNP1_TFBS_dl
X	14158406	X_14158406_SNP [dm3] X_14264373_SNP [dm6]	A	G	7.855e^-5	0.828	DOWNSTREAM CG13404 INTRON CG1461
X	5554412	X_5554412_SNP [dm3] X_5660379_SNP [dm6]	T	C	7.919e^-5	0.828	SYNONYMOUS_CODING CG42265	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4635561	2R_4635561_SNP [dm3] 2R_8748056_SNP [dm6]	C	T	7.950e^-5	0.828	UPSTREAM CG8740 INTRON CG8740
2R	18055620	2R_18055620_SNP [dm3] 2R_22168115_SNP [dm6]	C	G	8.028e^-5	0.828	INTRON a
2L	9911811	2L_9911811_SNP [dm3] 2L_9911811_SNP [dm6]	G	A	8.041e^-5	0.828	INTRON Etl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9561419	2L_9561419_SNP [dm3] 2L_9561419_SNP [dm6]	T	A	8.128e^-5	0.828	UPSTREAM jp INTRON jp
2R	8660816	2R_8660816_SNP [dm3] 2R_12773311_SNP [dm6]	T	C	8.173e^-5	0.828	INTERGENIC
3L	9941522	3L_9941522_SNP [dm3] 3L_9948422_SNP [dm6]	A	G	8.177e^-5	0.828	INTRON CG34356
2R	19303627	2R_19303627_SNP [dm3] 2R_23416104_SNP [dm6]	G	C	8.270e^-5	0.828	NON_SYNONYMOUS_CODING CG30411 INTRON CG9812	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	17260591	2R_17260591_SNP [dm3] 2R_21373086_SNP [dm6]	C	G	8.307e^-5	0.828	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18278767	2R_18278767_SNP [dm3] 2R_22391262_SNP [dm6]	C	T	8.382e^-5	0.828	SPLICE_SITE_REGION CG13506 INTRON CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10996593	3L_10996593_SNP [dm3] 3L_11003493_SNP [dm6]	C	T	8.429e^-5	0.828	INTRON klu
2R	12687425	2R_12687425_SNP [dm3] 2R_16799920_SNP [dm6]	C	T	8.469e^-5	0.828	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
X	3645034	X_3645034_SNP [dm3] X_3751001_SNP [dm6]	C	T	8.497e^-5	0.828	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9932477	3L_9932477_SNP [dm3] 3L_9939377_SNP [dm6]	A	G	8.530e^-5	0.828	INTRON CG34356
3L	9651491	3L_9651491_SNP [dm3] 3L_9658391_SNP [dm6]	G	A	8.570e^-5	0.828	INTRON fry & 1 other	TF binding site mE1_TFBS_inv
3L	7894419	3L_7894419_SNP [dm3] 3L_7901319_SNP [dm6]	T	C	8.627e^-5	0.828	SYNONYMOUS_CODING pbl INTRON pbl
2L	9562922	2L_9562922_SNP [dm3] 2L_9562922_SNP [dm6]	T	C	8.629e^-5	0.828	INTRON jp
2R	14354417	2R_14354417_SNP [dm3] 2R_18466912_SNP [dm6]	C	A	8.649e^-5	0.828	INTRON CG30116	TF binding site mE1_TFBS_chinmo
X	4645841	X_4645841_SNP [dm3] X_4751808_SNP [dm6]	G	A	8.809e^-5	0.828	INTERGENIC
2R	17060677	2R_17060677_SNP [dm3] 2R_21173172_SNP [dm6]	T	G	8.853e^-5	0.828	SPLICE_SITE_REGION Xpd INTRON Xpd	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	17792946	3L_17792946_SNP [dm3] 3L_17799846_SNP [dm6]	C	A	8.899e^-5	0.828	INTRON NUCB1	TF binding site BDTNP1_TFBS_twi
3L	3547726	3L_3547726_SNP [dm3] 3L_3547726_SNP [dm6]	T	C	9.069e^-5	0.828	INTRON Eip63E
2L	9562971	2L_9562971_SNP [dm3] 2L_9562971_SNP [dm6]	T	C	9.109e^-5	0.828	INTRON jp
3R	13251638	3R_13251638_DEL [dm3] 3R_17425916_DEL [dm6]	AAA	A	9.178e^-5	0.828	UTR_5_PRIME CG5873	TF binding site BDTNP1_TFBS_z
X	15325497	X_15325497_SNP [dm3] X_15431464_SNP [dm6]	G	A	9.191e^-5	0.828	INTRON Cngl
2L	11409194	2L_11409194_SNP [dm3] 2L_11409194_SNP [dm6]	A	C	9.214e^-5	0.828	INTERGENIC	regulatory region REDfly_CRMs
2R	9941864	2R_9941864_SNP [dm3] 2R_14054359_SNP [dm6]	C	T	9.422e^-5	0.828	INTRON mam
X	21189622	X_21189622_SNP [dm3] X_21318595_SNP [dm6]	G	C	9.471e^-5	0.828	SYNONYMOUS_CODING CG33713 UTR_3_PRIME CG33714 DOWNSTREAM Rpt6	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9911817	2L_9911817_SNP [dm3] 2L_9911817_SNP [dm6]	T	G	9.484e^-5	0.828	INTRON Etl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12699724	3L_12699724_SNP [dm3] 3L_12706624_SNP [dm6]	T	A	9.522e^-5	0.828	INTRON mirr	TF binding site BDTNP1_TFBS_da
3R	7262959	3R_7262959_SNP [dm3] 3R_11437237_SNP [dm6]	C	T	9.526e^-5	0.828	UTR_3_PRIME CG5281 UPSTREAM CG17230 DOWNSTREAM sals	TF binding site mE1_TFBS_cad
X	1171416	X_1171416_SNP [dm3] X_1277383_SNP [dm6]	T	A	9.571e^-5	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	14754755	X_14754755_SNP [dm3] X_14860722_SNP [dm6]	A	C	9.572e^-5	0.828	INTRON Flo2
X	10413834	X_10413834_SNP [dm3] X_10519801_SNP [dm6]	A	G	9.614e^-5	0.828	INTRON spri
2R	19024797	2R_19024797_SNP [dm3] 2R_23137274_SNP [dm6]	C	T	9.630e^-5	0.828	INTERGENIC
X	21190649	X_21190649_SNP [dm3] X_21319622_SNP [dm6]	T	A	9.662e^-5	0.828	UPSTREAM CG33713 & 1 other DOWNSTREAM Dd INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	12864171	3L_12864171_SNP [dm3] 3L_12871071_SNP [dm6]	G	A	9.961e^-5	0.828	INTERGENIC
2R	17930230	2R_17930230_SNP [dm3] 2R_22042725_SNP [dm6]	T	C	9.974e^-5	0.828	SYNONYMOUS_CODING PpD5
2L	3495361	2L_3495361_SNP [dm3] 2L_3495361_SNP [dm6]	T	A	9.974e^-5	0.828	INTRON tim
X	5554436	X_5554436_SNP [dm3] X_5660403_SNP [dm6]	A	G	1.002e^-4	0.828	SYNONYMOUS_CODING CG42265	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9562900	2L_9562900_SNP [dm3] 2L_9562900_SNP [dm6]	C	T	1.004e^-4	0.828	INTRON jp
3R	11511948	3R_11511948_SNP [dm3] 3R_15686226_SNP [dm6]	G	C	1.004e^-4	0.828	INTRON pxb
3L	10518960	3L_10518960_SNP [dm3] 3L_10525860_SNP [dm6]	T	G	1.012e^-4	0.828	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6912172	2L_6912172_SNP [dm3] 2L_6912172_SNP [dm6]	C	G	1.016e^-4	0.828	DOWNSTREAM Rat1 INTRON Wee1
3L	3547740	3L_3547740_SNP [dm3] 3L_3547740_SNP [dm6]	A	C	1.017e^-4	0.828	INTRON Eip63E
3L	14385310	3L_14385310_INS [dm3] 3L_14392210_INS [dm6]	T	TGCTCTTAA	1.018e^-4	0.828	INTERGENIC
X	15325532	X_15325532_SNP [dm3] X_15431499_SNP [dm6]	T	A	1.027e^-4	0.828	INTRON Cngl
X	14652975	X_14652975_SNP [dm3] X_14758942_SNP [dm6]	A	G	1.032e^-4	0.828	SYNONYMOUS_CODING CG15890	TF binding site BDTNP1_TFBS_da
3R	25547286	3R_25547286_MNP [dm3] 3R_29721564_MNP [dm6]	GAA	TTT	1.035e^-4	0.828	UPSTREAM CG34296 INTRON CG15506	TF binding site mE1_TFBS_chinmo
2R	8572133	2R_8572133_SNP [dm3] 2R_12684628_SNP [dm6]	A	G	1.042e^-4	0.828	SYNONYMOUS_CODING CG8771
3L	3547349	3L_3547349_SNP [dm3] 3L_3547349_SNP [dm6]	C	A	1.051e^-4	0.828	INTRON Eip63E
3L	14689118	3L_14689118_SNP [dm3] 3L_14696018_SNP [dm6]	T	A	1.058e^-4	0.828	DOWNSTREAM CG13474 INTRON ome
X	3603372	X_3603372_DEL [dm3] X_3709339_DEL [dm6]	GTCGATGGAAAAGG...	G	1.062e^-4	0.828	INTRON Rala
2R	11543639	2R_11543639_SNP [dm3] 2R_15656134_SNP [dm6]	C	T	1.071e^-4	0.828	UPSTREAM mir-278 INTRON CG42524
2L	3227060	2L_3227060_SNP [dm3] 2L_3227060_SNP [dm6]	C	G	1.072e^-4	0.828	INTERGENIC
2R	13711448	2R_13711448_INS [dm3] 2R_17823943_INS [dm6]	C	CAAC	1.072e^-4	0.828	INTRON grh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
3R	6105593	3R_6105593_SNP [dm3] 3R_10279871_SNP [dm6]	C	T	1.076e^-4	0.828	INTRON CG43143
3L	2377966	3L_2377966_INS [dm3] 3L_2377966_INS [dm6]	T	TT	1.082e^-4	0.828	UPSTREAM CG15877 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9562967	2L_9562967_SNP [dm3] 2L_9562967_SNP [dm6]	G	A	1.085e^-4	0.828	INTRON jp
X	21191090	X_21191090_SNP [dm3] X_21320063_SNP [dm6]	G	A	1.085e^-4	0.828	UTR_3_PRIME Dd UPSTREAM CG33713 & 1 other	TF binding site mE1_TFBS_HSA
3L	2996388	3L_2996388_SNP [dm3] 3L_2996388_SNP [dm6]	G	A	1.092e^-4	0.828	DOWNSTREAM CG2113 INTERGENIC
2R	18362978	2R_18362978_SNP [dm3] 2R_22475473_SNP [dm6]	T	C	1.094e^-4	0.828	SYNONYMOUS_CODING CG45062 DOWNSTREAM CG45063	TF binding site mE1_TFBS_chinmo
3L	16442415	3L_16442415_SNP [dm3] 3L_16449315_SNP [dm6]	C	T	1.095e^-4	0.828	INTRON CG33158 & 1 other
2R	14354419	2R_14354419_SNP [dm3] 2R_18466914_SNP [dm6]	C	T	1.096e^-4	0.828	INTRON CG30116	TF binding site mE1_TFBS_chinmo
X	14754723	X_14754723_SNP [dm3] X_14860690_SNP [dm6]	T	A	1.098e^-4	0.828	INTRON Flo2
X	1195508	X_1195508_SNP [dm3] X_1301475_SNP [dm6]	T	A	1.105e^-4	0.828	INTRON DAAM
3L	9956369	3L_9956369_SNP [dm3] 3L_9963269_SNP [dm6]	A	T	1.108e^-4	0.828	INTRON CG34356
2L	11508635	2L_11508635_SNP [dm3] 2L_11508635_SNP [dm6]	T	C	1.117e^-4	0.828	UTR_3_PRIME spz4 & 1 other DOWNSTREAM CG6509
X	18939304	X_18939304_SNP [dm3] X_19045271_SNP [dm6]	T	C	1.118e^-4	0.828	INTERGENIC
X	16582402	X_16582402_SNP [dm3] X_16688369_SNP [dm6]	G	A	1.120e^-4	0.828	UPSTREAM Sep4 INTRON Sep4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13739728	2R_13739728_SNP [dm3] 2R_17852223_SNP [dm6]	T	C	1.123e^-4	0.828	INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	17784872	3L_17784872_SNP [dm3] 3L_17791772_SNP [dm6]	C	T	1.124e^-4	0.828	UPSTREAM CG42815 DOWNSTREAM CG42816 INTERGENIC
3R	6885831	3R_6885831_SNP [dm3] 3R_11060109_SNP [dm6]	G	A	1.127e^-4	0.828	INTERGENIC
3L	10534846	3L_10534846_SNP [dm3] 3L_10541746_SNP [dm6]	T	G	1.136e^-4	0.828	INTRON A2bp1
3L	17787281	3L_17787281_SNP [dm3] 3L_17794181_SNP [dm6]	T	C	1.141e^-4	0.828	NON_SYNONYMOUS_CODING CG42816
2R	18815646	2R_18815646_SNP [dm3] 2R_22928123_SNP [dm6]	T	A	1.150e^-4	0.828	UTR_3_PRIME CG42678 UPSTREAM CG42678 INTRON CG42678	TF binding site mE1_TFBS_cad
3R	17541448	3R_17541448_SNP [dm3] 3R_21715726_SNP [dm6]	A	T	1.152e^-4	0.828	INTRON CG31176
2R	12132686	2R_12132686_SNP [dm3] 2R_16245181_SNP [dm6]	T	A	1.156e^-4	0.828	INTRON CngA	TF binding site mE1_TFBS_cad
X	5726576	X_5726576_SNP [dm3] X_5832543_SNP [dm6]	C	G	1.163e^-4	0.828	UPSTREAM CR43264 DOWNSTREAM tRNA:CR32761:Psi INTRON CG15765
3R	13139061	3R_13139061_SNP [dm3] 3R_17313339_SNP [dm6]	G	T	1.171e^-4	0.828	INTERGENIC
3L	22522937	3L_22522937_SNP [dm3] 3L_22529837_SNP [dm6]	C	T	1.180e^-4	0.828	INTERGENIC
X	12421348	X_12421348_SNP [dm3] X_12527315_SNP [dm6]	C	T	1.196e^-4	0.828	INTRON CG43921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16359739	2R_16359739_SNP [dm3] 2R_20472234_SNP [dm6]	C	T	1.197e^-4	0.828	SYNONYMOUS_CODING CG12484
3L	17591663	3L_17591663_SNP [dm3] 3L_17598563_SNP [dm6]	G	A	1.201e^-4	0.828	INTRON Eip74EF
2R	16838708	2R_16838708_INS [dm3] 2R_20951203_INS [dm6]	A	AA	1.205e^-4	0.828	DOWNSTREAM CG33704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14041131	3L_14041131_SNP [dm3] 3L_14048031_SNP [dm6]	T	A	1.206e^-4	0.828	SPLICE_SITE_REGION blue INTRON blue	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	15963864	3L_15963864_SNP [dm3] 3L_15970764_SNP [dm6]	A	G	1.211e^-4	0.828	SYNONYMOUS_CODING brm DOWNSTREAM CG10516	TF binding site mE1_TFBS_sens
X	1718741	X_1718741_SNP [dm3] X_1824708_SNP [dm6]	A	T	1.216e^-4	0.828	UPSTREAM CG42666 INTRON CG42666	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17934276	2R_17934276_SNP [dm3] 2R_22046771_SNP [dm6]	G	A	1.220e^-4	0.828	INTERGENIC
3R	8359943	3R_8359943_SNP [dm3] 3R_12534221_SNP [dm6]	T	C	1.232e^-4	0.828	INTRON Octbeta3R
3L	22599550	3L_22599550_SNP [dm3] 3L_22606450_SNP [dm6]	A	G	1.239e^-4	0.828	SYNONYMOUS_CODING CG6914 INTRON CG14459	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11666476	2R_11666476_SNP [dm3] 2R_15778971_SNP [dm6]	C	T	1.239e^-4	0.828	INTRON Zasp52
3R	19357158	3R_19357158_SNP [dm3] 3R_23531436_SNP [dm6]	T	C	1.252e^-4	0.828	UPSTREAM CG10175 INTERGENIC
3L	13192790	3L_13192790_SNP [dm3] 3L_13199690_SNP [dm6]	A	T	1.262e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	19305449	2R_19305449_SNP [dm3] 2R_23417926_SNP [dm6]	G	A	1.265e^-4	0.828	DOWNSTREAM CG30411 INTRON CG9812
2R	19305478	2R_19305478_SNP [dm3] 2R_23417955_SNP [dm6]	A	T	1.265e^-4	0.828	DOWNSTREAM CG30411 INTRON CG9812
X	4427868	X_4427868_SNP [dm3] X_4533835_SNP [dm6]	C	A	1.266e^-4	0.828	UTR_3_PRIME CG3556 INTRON CR32773
X	14794981	X_14794981_SNP [dm3] X_14900948_SNP [dm6]	A	G	1.267e^-4	0.828	DOWNSTREAM CG9512 INTRON Flo2	TF binding site BDTNP1_TFBS_twi
X	19710835	X_19710835_SNP [dm3] X_19816802_SNP [dm6]	A	C	1.271e^-4	0.828	DOWNSTREAM skpC INTERGENIC
2R	14354421	2R_14354421_SNP [dm3] 2R_18466916_SNP [dm6]	G	A	1.276e^-4	0.828	INTRON CG30116	TF binding site mE1_TFBS_chinmo
3L	10534859	3L_10534859_SNP [dm3] 3L_10541759_SNP [dm6]	C	G	1.277e^-4	0.828	INTRON A2bp1
X	14608172	X_14608172_SNP [dm3] X_14714139_SNP [dm6]	C	T	1.284e^-4	0.828	INTRON NetB
X	15144651	X_15144651_SNP [dm3] X_15250618_SNP [dm6]	C	A	1.286e^-4	0.828	INTERGENIC
3R	4041665	3R_4041665_SNP [dm3] 3R_8215943_SNP [dm6]	T	A	1.288e^-4	0.828	INTERGENIC
X	20728758	X_20728758_SNP [dm3] X_20857731_SNP [dm6]	T	C	1.294e^-4	0.828	INTRON shakB
3R	7349516	3R_7349516_SNP [dm3] 3R_11523794_SNP [dm6]	C	G	1.297e^-4	0.828	INTERGENIC
2L	19743827	2L_19743827_SNP [dm3] 2L_19743827_SNP [dm6]	G	A	1.298e^-4	0.828	SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11586586	3R_11586586_SNP [dm3] 3R_15760864_SNP [dm6]	T	G	1.300e^-4	0.828	INTERGENIC
3R	20362108	3R_20362108_SNP [dm3] 3R_24536386_SNP [dm6]	G	A	1.308e^-4	0.828	UTR_3_PRIME ana1 & 1 other
3L	18541070	3L_18541070_SNP [dm3] 3L_18547970_SNP [dm6]	G	A	1.310e^-4	0.828	INTERGENIC
3R	18387547	3R_18387547_SNP [dm3] 3R_22561825_SNP [dm6]	G	A	1.316e^-4	0.828	INTRON CG5278
3R	18053411	3R_18053411_SNP [dm3] 3R_22227689_SNP [dm6]	T	A	1.318e^-4	0.828	INTRON SKIP
2R	12687339	2R_12687339_SNP [dm3] 2R_16799834_SNP [dm6]	G	T	1.320e^-4	0.828	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	8582894	3L_8582894_SNP [dm3] 3L_8589794_SNP [dm6]	G	C	1.321e^-4	0.828	UPSTREAM CG43078 INTRON CG43078
2R	16385841	2R_16385841_SNP [dm3] 2R_20498336_SNP [dm6]	G	T	1.322e^-4	0.828	INTERGENIC
2R	8663846	2R_8663846_SNP [dm3] 2R_12776341_SNP [dm6]	A	G	1.322e^-4	0.828	UPSTREAM CR45266 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	12417349	3L_12417349_SNP [dm3] 3L_12424249_SNP [dm6]	C	A	1.323e^-4	0.828	INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12417556	3L_12417556_SNP [dm3] 3L_12424456_SNP [dm6]	T	C	1.323e^-4	0.828	INTRON toe	TF binding site mE1_TFBS_cad
X	2814871	X_2814871_INS [dm3] X_2920838_INS [dm6]	T	TTT	1.325e^-4	0.828	INTRON kirre & 1 other
X	2814875	X_2814875_SNP [dm3] X_2920842_SNP [dm6]	T	C	1.325e^-4	0.828	INTRON kirre & 1 other
3L	3004072	3L_3004072_DEL [dm3] 3L_3004072_DEL [dm6]	ACATTCA	A	1.334e^-4	0.828	INTRON FMRFaR
X	2244424	X_2244424_SNP [dm3] X_2350391_SNP [dm6]	C	T	1.335e^-4	0.828	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
2R	19596113	2R_19596113_SNP [dm3] 2R_23708590_SNP [dm6]	G	T	1.337e^-4	0.828	UPSTREAM CR45326 DOWNSTREAM l_2_tid INTRON l_2_not & 1 other	TF binding site mE1_TFBS_cad
2L	9567365	2L_9567365_SNP [dm3] 2L_9567365_SNP [dm6]	T	A	1.339e^-4	0.828	UPSTREAM jp DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17060689	2R_17060689_SNP [dm3] 2R_21173184_SNP [dm6]	C	T	1.343e^-4	0.828	INTRON Xpd	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	16848553	X_16848553_INS [dm3] X_16954520_INS [dm6]	C	TGACTTAAGA	1.349e^-4	0.828	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	6850278	2R_6850278_SNP [dm3] 2R_10962773_SNP [dm6]	G	A	1.351e^-4	0.828	INTERGENIC
2L	9567382	2L_9567382_SNP [dm3] 2L_9567382_SNP [dm6]	A	C	1.353e^-4	0.828	UPSTREAM jp DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	13917272	2R_13917272_SNP [dm3] 2R_18029767_SNP [dm6]	C	T	1.361e^-4	0.828	INTERGENIC
3R	7261179	3R_7261179_SNP [dm3] 3R_11435457_SNP [dm6]	G	C	1.362e^-4	0.828	SYNONYMOUS_CODING CG6744 UPSTREAM CG5281	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10208450	3L_10208450_SNP [dm3] 3L_10215350_SNP [dm6]	T	G	1.368e^-4	0.828	UPSTREAM CG8065 INTERGENIC
2R	4592576	2R_4592576_SNP [dm3] 2R_8705071_SNP [dm6]	C	T	1.371e^-4	0.828	DOWNSTREAM CG12376 INTERGENIC
X	5256720	X_5256720_SNP [dm3] X_5362687_SNP [dm6]	C	T	1.374e^-4	0.828	INTRON SK
X	2244415	X_2244415_SNP [dm3] X_2350382_SNP [dm6]	A	G	1.375e^-4	0.828	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
2L	19686963	2L_19686963_SNP [dm3] 2L_19686963_SNP [dm6]	G	A	1.380e^-4	0.828	INTRON Lar
2L	13983778	2L_13983778_SNP [dm3] 2L_13983778_SNP [dm6]	T	A	1.384e^-4	0.828	DOWNSTREAM NimC2 INTRON rk	TF binding site mE1_TFBS_chinmo
3L	14097816	3L_14097816_SNP [dm3] 3L_14104716_SNP [dm6]	T	C	1.392e^-4	0.828	SYNONYMOUS_CODING Sox21a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4606413	3L_4606413_SNP [dm3] 3L_4606413_SNP [dm6]	G	A	1.400e^-4	0.828	INTRON Src64B
3R	23676099	3R_23676099_SNP [dm3] 3R_27850377_SNP [dm6]	A	T	1.400e^-4	0.828	INTRON CG34353
2L	9571567	2L_9571567_SNP [dm3] 2L_9571567_SNP [dm6]	C	A	1.404e^-4	0.828	NON_SYNONYMOUS_CODING CG3838
2R	17964172	2R_17964172_SNP [dm3] 2R_22076667_SNP [dm6]	T	C	1.405e^-4	0.828	SYNONYMOUS_CODING GlcT-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3227032	2L_3227032_SNP [dm3] 2L_3227032_SNP [dm6]	A	G	1.407e^-4	0.828	INTERGENIC
3L	12084728	3L_12084728_SNP [dm3] 3L_12091628_SNP [dm6]	C	A	1.408e^-4	0.828	INTERGENIC
2R	17693886	2R_17693886_SNP [dm3] 2R_21806381_SNP [dm6]	T	C	1.412e^-4	0.828	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	10548314	2R_10548314_INS [dm3] 2R_14660809_INS [dm6]	A	AA	1.424e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9677618	3L_9677618_SNP [dm3] 3L_9684518_SNP [dm6]	C	A	1.424e^-4	0.828	SPLICE_SITE_REGION CG6767 UPSTREAM CG16719 INTRON CG6767	TF binding site mE1_TFBS_cad
X	21878382	X_21878382_SNP [dm3] X_22476546_SNP [dm6]	T	C	1.425e^-4	0.828	INTRON CG12576
3L	7049927	3L_7049927_SNP [dm3] 3L_7056827_SNP [dm6]	A	C	1.433e^-4	0.828	INTERGENIC
2L	6847489	2L_6847489_SNP [dm3] 2L_6847489_SNP [dm6]	T	A	1.438e^-4	0.828	INTERGENIC
3L	18603953	3L_18603953_SNP [dm3] 3L_18610853_SNP [dm6]	G	T	1.441e^-4	0.828	NON_SYNONYMOUS_CODING CG32201 INTRON CG4174 & 1 other
3R	23582428	3R_23582428_INS [dm3] 3R_27756706_INS [dm6]	C	CCTGTCGCTCCATT...	1.441e^-4	0.828	INTERGENIC
3L	22354295	3L_22354295_SNP [dm3] 3L_22361195_SNP [dm6]	A	C	1.445e^-4	0.828	INTRON Ten-m	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	5706417	3L_5706417_SNP [dm3] 3L_5713317_SNP [dm6]	G	T	1.450e^-4	0.828	UPSTREAM CG44521 INTRON sif
3L	13231125	3L_13231125_SNP [dm3] 3L_13238025_SNP [dm6]	A	G	1.454e^-4	0.828	INTRON caps	TF binding site mE1_TFBS_HSA
2R	18555907	2R_18555907_SNP [dm3] 2R_22668402_SNP [dm6]	T	A	1.459e^-4	0.828	UPSTREAM CG13516 DOWNSTREAM CG30273 INTRON CG30269	TF binding site mE1_TFBS_cad
3L	12409411	3L_12409411_SNP [dm3] 3L_12416311_SNP [dm6]	C	T	1.461e^-4	0.828	SYNONYMOUS_CODING ArfGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13646965	3L_13646965_SNP [dm3] 3L_13653865_SNP [dm6]	A	G	1.462e^-4	0.828	INTRON bru-3
2L	11409140	2L_11409140_SNP [dm3] 2L_11409140_SNP [dm6]	A	T	1.465e^-4	0.828	INTERGENIC	regulatory region REDfly_CRMs
3R	17541445	3R_17541445_INS [dm3] 3R_21715723_INS [dm6]	A	AA	1.468e^-4	0.828	INTRON CG31176
X	8402577	X_8402577_SNP [dm3] X_8508544_SNP [dm6]	G	A	1.469e^-4	0.828	INTRON CG33181
2L	4245053	2L_4245053_SNP [dm3] 2L_4245053_SNP [dm6]	C	T	1.469e^-4	0.828	INTERGENIC
3L	8547757	3L_8547757_SNP [dm3] 3L_8554657_SNP [dm6]	A	T	1.473e^-4	0.828	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8933095	2L_8933095_SNP [dm3] 2L_8933095_SNP [dm6]	C	A	1.474e^-4	0.828	UTR_3_PRIME CG34398 UPSTREAM Tsp29Fa DOWNSTREAM CG34398
3L	12409224	3L_12409224_SNP [dm3] 3L_12416124_SNP [dm6]	T	G	1.475e^-4	0.828	INTRON ArfGAP1	TF binding site mE1_TFBS_chinmo
2R	19390586	2R_19390586_SNP [dm3] 2R_23503063_SNP [dm6]	T	C	1.476e^-4	0.828	UTR_5_PRIME CG13559	TF binding site mE1_TFBS_inv
3L	10980417	3L_10980417_INS [dm3] 3L_10987317_INS [dm6]	G	GG	1.476e^-4	0.828	INTRON klu
2R	19169601	2R_19169601_SNP [dm3] 2R_23282078_SNP [dm6]	T	C	1.498e^-4	0.828	DOWNSTREAM CG3124 INTERGENIC
X	5557869	X_5557869_SNP [dm3] X_5663836_SNP [dm6]	T	A	1.498e^-4	0.828	UPSTREAM CG42265 DOWNSTREAM Sirt4 EXON CR45520
2R	18278439	2R_18278439_SNP [dm3] 2R_22390934_SNP [dm6]	C	T	1.500e^-4	0.828	INTRON CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
X	20683288	X_20683288_SNP [dm3] X_20812261_SNP [dm6]	C	T	1.503e^-4	0.828	INTRON shakB
3R	8929715	3R_8929715_DEL [dm3] 3R_13103993_DEL [dm6]	GC	G	1.504e^-4	0.828	INTRON timeout
2R	19597661	2R_19597661_SNP [dm3] 2R_23710138_SNP [dm6]	T	C	1.505e^-4	0.828	UPSTREAM l_2_not DOWNSTREAM CR45326 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6989922	2L_6989922_SNP [dm3] 2L_6989922_SNP [dm6]	G	A	1.513e^-4	0.828	INTRON uif
3L	9873327	3L_9873327_SNP [dm3] 3L_9880227_SNP [dm6]	T	C	1.514e^-4	0.828	NON_SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
3L	3547138	3L_3547138_SNP [dm3] 3L_3547138_SNP [dm6]	G	T	1.516e^-4	0.828	INTRON Eip63E
2R	12132478	2R_12132478_SNP [dm3] 2R_16244973_SNP [dm6]	A	G	1.516e^-4	0.828	SYNONYMOUS_CODING CngA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18370094	X_18370094_SNP [dm3] X_18476061_SNP [dm6]	T	A	1.518e^-4	0.828	INTRON CG32547	TF binding site mE1_TFBS_HSA
3L	12084748	3L_12084748_SNP [dm3] 3L_12091648_SNP [dm6]	C	T	1.524e^-4	0.828	INTERGENIC
2L	19683135	2L_19683135_SNP [dm3] 2L_19683135_SNP [dm6]	A	G	1.529e^-4	0.828	INTRON Lar
3L	1740467	3L_1740467_SNP [dm3] 3L_1740467_SNP [dm6]	A	C	1.534e^-4	0.828	INTRON Gk
2L	9567355	2L_9567355_SNP [dm3] 2L_9567355_SNP [dm6]	A	G	1.537e^-4	0.828	UPSTREAM jp DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	20137954	2R_20137954_SNP [dm3] 2R_24250431_SNP [dm6]	C	T	1.542e^-4	0.828	SYNONYMOUS_CODING Ir60a UPSTREAM snoRNA:Me18S-A1597 INTRON nord	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12855072	2L_12855072_SNP [dm3] 2L_12855072_SNP [dm6]	T	G	1.548e^-4	0.828	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11612046	2R_11612046_SNP [dm3] 2R_15724541_SNP [dm6]	A	T	1.550e^-4	0.828	INTERGENIC
3L	12589933	3L_12589933_SNP [dm3] 3L_12596833_SNP [dm6]	C	T	1.560e^-4	0.828	DOWNSTREAM ara INTERGENIC
3R	5121954	3R_5121954_SNP [dm3] 3R_9296232_SNP [dm6]	A	G	1.561e^-4	0.828	INTRON CG8861
3R	13094958	3R_13094958_SNP [dm3] 3R_17269236_SNP [dm6]	C	T	1.564e^-4	0.828	INTERGENIC
3L	12409268	3L_12409268_SNP [dm3] 3L_12416168_SNP [dm6]	T	C	1.564e^-4	0.828	INTRON ArfGAP1	TF binding site mE1_TFBS_chinmo
2R	14294630	2R_14294630_SNP [dm3] 2R_18407125_SNP [dm6]	G	A	1.566e^-4	0.828	SYNONYMOUS_CODING GstE7 UPSTREAM GstE8 DOWNSTREAM GstE6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	5121977	3R_5121977_SNP [dm3] 3R_9296255_SNP [dm6]	A	T	1.575e^-4	0.828	INTRON CG8861
3R	5847134	3R_5847134_SNP [dm3] 3R_10021412_SNP [dm6]	A	T	1.581e^-4	0.828	START_GAINED Mical UTR_5_PRIME Mical INTRON Mical	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8360568	2R_8360568_SNP [dm3] 2R_12473063_SNP [dm6]	A	G	1.582e^-4	0.828	SYNONYMOUS_CODING CG8550
2R	18602229	2R_18602229_SNP [dm3] 2R_22714724_SNP [dm6]	C	T	1.583e^-4	0.828	SYNONYMOUS_CODING CG30268	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	7273988	3R_7273988_SNP [dm3] 3R_11448266_SNP [dm6]	C	T	1.588e^-4	0.828	UTR_5_PRIME sals INTRON CG17230 & 1 other
3L	9716375	3L_9716375_SNP [dm3] 3L_9723275_SNP [dm6]	G	T	1.589e^-4	0.828	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17035200	2R_17035200_SNP [dm3] 2R_21147695_SNP [dm6]	C	T	1.592e^-4	0.828	UTR_3_PRIME CG15657 DOWNSTREAM CG30389 & 1 other	TF binding site mE1_TFBS_cad
3R	5121979	3R_5121979_SNP [dm3] 3R_9296257_SNP [dm6]	T	G	1.594e^-4	0.828	INTRON CG8861
X	1722141	X_1722141_SNP [dm3] X_1828108_SNP [dm6]	T	A	1.597e^-4	0.828	INTRON CG42666
2L	21929390	2L_21929390_SNP [dm3] 2L_21929390_SNP [dm6]	G	C	1.598e^-4	0.828	UPSTREAM CR45334 INTERGENIC
2R	19302845	2R_19302845_DEL [dm3] 2R_23415322_DEL [dm6]	AGCGCAGA	A	1.606e^-4	0.829	UPSTREAM CG30411 INTRON CG9812	TF binding site mE1_TFBS_Trl
X	14158711	X_14158711_SNP [dm3] X_14264678_SNP [dm6]	A	G	1.616e^-4	0.83	SYNONYMOUS_CODING CG1461 DOWNSTREAM CG13404
3L	1994365	3L_1994365_SNP [dm3] 3L_1994365_SNP [dm6]	T	C	1.618e^-4	0.83	INTERGENIC
2L	12586581	2L_12586581_SNP [dm3] 2L_12586581_SNP [dm6]	T	C	1.628e^-4	0.83	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	15245000	2L_15245000_SNP [dm3] 2L_15245000_SNP [dm6]	T	A	1.630e^-4	0.83	INTRON ZnT35C
2L	9923352	2L_9923352_SNP [dm3] 2L_9923352_SNP [dm6]	C	T	1.634e^-4	0.83	DOWNSTREAM CG4592 INTRON TbCMF46	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21187447	X_21187447_SNP [dm3] X_21316420_SNP [dm6]	A	C	1.638e^-4	0.83	INTRON CG1801 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
X	16582448	X_16582448_SNP [dm3] X_16688415_SNP [dm6]	A	C	1.639e^-4	0.83	UPSTREAM Sep4 INTRON Sep4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7680449	X_7680449_SNP [dm3] X_7786416_SNP [dm6]	A	T	1.661e^-4	0.83	INTERGENIC
2R	17593717	2R_17593717_SNP [dm3] 2R_21706212_SNP [dm6]	G	A	1.667e^-4	0.83	INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	22990938	3L_22990938_SNP [dm3] 3L_22997838_SNP [dm6]	C	T	1.672e^-4	0.83	UPSTREAM nrm INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
X	14754728	X_14754728_SNP [dm3] X_14860695_SNP [dm6]	T	A	1.679e^-4	0.83	INTRON Flo2
3L	4854515	3L_4854515_SNP [dm3] 3L_4854515_SNP [dm6]	A	G	1.691e^-4	0.83	INTERGENIC
2L	19731717	2L_19731717_DEL [dm3] 2L_19731717_DEL [dm6]	CC	C	1.693e^-4	0.83	UTR_3_PRIME Lar DOWNSTREAM CG10462 & 1 other
X	5489798	X_5489798_SNP [dm3] X_5595765_SNP [dm6]	A	T	1.694e^-4	0.83	INTRON Vsx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	8704103	2L_8704103_SNP [dm3] 2L_8704103_SNP [dm6]	C	T	1.701e^-4	0.83	INTRON Hnf4 EXON CR44992
2R	11666478	2R_11666478_INS [dm3] 2R_15778973_INS [dm6]	G	GAG	1.703e^-4	0.83	INTRON Zasp52
2R	9958271	2R_9958271_SNP [dm3] 2R_14070766_SNP [dm6]	A	G	1.703e^-4	0.83	INTRON Prosap
2R	9958274	2R_9958274_SNP [dm3] 2R_14070769_SNP [dm6]	T	A	1.703e^-4	0.83	INTRON Prosap
2R	13932114	2R_13932114_SNP [dm3] 2R_18044609_SNP [dm6]	C	G	1.706e^-4	0.83	UPSTREAM CG5773 INTRON CG5770
X	9849309	X_9849309_SNP [dm3] X_9955276_SNP [dm6]	T	C	1.713e^-4	0.83	INTERGENIC
2R	8207093	2R_8207093_SNP [dm3] 2R_12319588_SNP [dm6]	G	T	1.725e^-4	0.83	INTERGENIC
2R	5079873	2R_5079873_SNP [dm3] 2R_9192368_SNP [dm6]	T	A	1.734e^-4	0.83	UPSTREAM CG8026 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2926031	X_2926031_SNP [dm3] X_3031998_SNP [dm6]	C	A	1.746e^-4	0.83	INTRON kirre
3R	25547272	3R_25547272_SNP [dm3] 3R_29721550_SNP [dm6]	A	G	1.750e^-4	0.83	UPSTREAM CG34296 INTRON CG15506	TF binding site mE1_TFBS_chinmo
2L	3227039	2L_3227039_SNP [dm3] 2L_3227039_SNP [dm6]	A	T	1.751e^-4	0.83	INTERGENIC
2L	12923423	2L_12923423_SNP [dm3] 2L_12923423_SNP [dm6]	T	G	1.755e^-4	0.83	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
2L	9567338	2L_9567338_SNP [dm3] 2L_9567338_SNP [dm6]	T	A	1.757e^-4	0.83	UPSTREAM jp DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	19358349	3R_19358349_DEL [dm3] 3R_23532627_DEL [dm6]	CTC	C	1.759e^-4	0.83	DOWNSTREAM CG10170 INTERGENIC
3L	1740510	3L_1740510_SNP [dm3] 3L_1740510_SNP [dm6]	C	A	1.788e^-4	0.83	INTRON Gk
X	14158768	X_14158768_SNP [dm3] X_14264735_SNP [dm6]	T	C	1.789e^-4	0.83	SYNONYMOUS_CODING CG1461 DOWNSTREAM CG13404
3R	19079368	3R_19079368_SNP [dm3] 3R_23253646_SNP [dm6]	C	A	1.797e^-4	0.83	SYNONYMOUS_CODING EloA
X	19250476	X_19250476_SNP [dm3] X_19356443_SNP [dm6]	A	T	1.814e^-4	0.83	INTRON kek5
2L	16662009	2L_16662009_SNP [dm3] 2L_16662009_SNP [dm6]	C	A	1.814e^-4	0.83	UTR_3_PRIME CG42389 DOWNSTREAM CG42389
2L	2706401	2L_2706401_SNP [dm3] 2L_2706401_SNP [dm6]	G	C	1.815e^-4	0.83	INTRON CG31690
2R	11611586	2R_11611586_SNP [dm3] 2R_15724081_SNP [dm6]	T	G	1.816e^-4	0.83	INTERGENIC
X	14795022	X_14795022_SNP [dm3] X_14900989_SNP [dm6]	T	C	1.822e^-4	0.83	DOWNSTREAM CG9512 INTRON Flo2	TF binding site BDTNP1_TFBS_twi
2R	10234617	2R_10234617_SNP [dm3] 2R_14347112_SNP [dm6]	A	G	1.824e^-4	0.83	INTRON Shroom
3L	3090995	3L_3090995_SNP [dm3] 3L_3090995_SNP [dm6]	C	T	1.827e^-4	0.83	UTR_3_PRIME Cht7 DOWNSTREAM CG11486 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	8246368	X_8246368_SNP [dm3] X_8352335_SNP [dm6]	A	G	1.833e^-4	0.83	INTRON nAChRalpha3
2R	18758400	2R_18758400_SNP [dm3] 2R_22870877_SNP [dm6]	C	T	1.834e^-4	0.83	UPSTREAM CG13532 DOWNSTREAM fd59A INTERGENIC	TF binding site mE1_TFBS_cad
2L	10296356	2L_10296356_SNP [dm3] 2L_10296356_SNP [dm6]	C	T	1.834e^-4	0.83	SYNONYMOUS_CODING CYLD UPSTREAM Hand	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
2L	9558318	2L_9558318_SNP [dm3] 2L_9558318_SNP [dm6]	C	T	1.840e^-4	0.83	INTRON jp
3L	17784873	3L_17784873_SNP [dm3] 3L_17791773_SNP [dm6]	C	T	1.843e^-4	0.83	UPSTREAM CG42815 DOWNSTREAM CG42816 INTERGENIC
2L	9942004	2L_9942004_SNP [dm3] 2L_9942004_SNP [dm6]	C	A	1.843e^-4	0.83	SYNONYMOUS_CODING CG5853 UTR_3_PRIME CG4619	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2856081	3L_2856081_SNP [dm3] 3L_2856081_SNP [dm6]	T	G	1.848e^-4	0.83	INTRON CG43444
X	2792709	X_2792709_INS [dm3] X_2898676_INS [dm6]	A	AA	1.861e^-4	0.83	INTRON kirre
X	2792711	X_2792711_DEL [dm3] X_2898678_DEL [dm6]	GAC	G	1.861e^-4	0.83	INTRON kirre
X	15862793	X_15862793_SNP [dm3] X_15968760_SNP [dm6]	T	C	1.864e^-4	0.83	INTRON mmd
2R	8630957	2R_8630957_SNP [dm3] 2R_12743452_SNP [dm6]	T	C	1.874e^-4	0.83	INTRON CG42663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	413912	3L_413912_SNP [dm3] 3L_413912_SNP [dm6]	C	T	1.880e^-4	0.83	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	11409131	2L_11409131_SNP [dm3] 2L_11409131_SNP [dm6]	G	A	1.882e^-4	0.83	INTERGENIC	regulatory region REDfly_CRMs
3R	6105532	3R_6105532_SNP [dm3] 3R_10279810_SNP [dm6]	C	T	1.892e^-4	0.83	INTRON CG43143
3R	12689074	3R_12689074_SNP [dm3] 3R_16863352_SNP [dm6]	T	C	1.898e^-4	0.83	INTRON iab-8
3L	10517121	3L_10517121_SNP [dm3] 3L_10524021_SNP [dm6]	T	C	1.906e^-4	0.83	INTRON A2bp1
2L	10482691	2L_10482691_SNP [dm3] 2L_10482691_SNP [dm6]	A	G	1.909e^-4	0.83	NON_SYNONYMOUS_CODING RluA-2 UTR_3_PRIME RluA-2 UPSTREAM Grip75	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	4399328	3L_4399328_SNP [dm3] 3L_4399328_SNP [dm6]	T	A	1.912e^-4	0.83	INTRON slow	TF binding site mE1_TFBS_cad
3R	11586587	3R_11586587_SNP [dm3] 3R_15760865_SNP [dm6]	T	G	1.915e^-4	0.83	INTERGENIC
2R	9586417	2R_9586417_SNP [dm3] 2R_13698912_SNP [dm6]	C	A	1.916e^-4	0.83	INTRON fas
2R	17267385	2R_17267385_SNP [dm3] 2R_21379880_SNP [dm6]	C	A	1.917e^-4	0.83	UPSTREAM cv-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	2531631	3L_2531631_SNP [dm3] 3L_2531631_SNP [dm6]	A	C	1.919e^-4	0.83	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	6055459	3L_6055459_SNP [dm3] 3L_6062359_SNP [dm6]	G	T	1.922e^-4	0.83	SYNONYMOUS_CODING CG10472 DOWNSTREAM CG6592	TF binding site mE1_TFBS_cad
2L	15161155	2L_15161155_SNP [dm3] 2L_15161155_SNP [dm6]	C	T	1.932e^-4	0.83	DOWNSTREAM CG4168 & 1 other INTERGENIC
3L	12998710	3L_12998710_SNP [dm3] 3L_13005610_SNP [dm6]	A	C	1.935e^-4	0.83	INTERGENIC
X	5321017	X_5321017_SNP [dm3] X_5426984_SNP [dm6]	T	C	1.953e^-4	0.83	UTR_3_PRIME CG4165 UPSTREAM CG16756 DOWNSTREAM CG4165
3R	23574237	3R_23574237_SNP [dm3] 3R_27748515_SNP [dm6]	A	T	1.953e^-4	0.83	DOWNSTREAM Ets98B INTERGENIC
3R	9147982	3R_9147982_SNP [dm3] 3R_13322260_SNP [dm6]	A	C	1.954e^-4	0.83	INTERGENIC
3L	8582618	3L_8582618_SNP [dm3] 3L_8589518_SNP [dm6]	T	C	1.976e^-4	0.83	UPSTREAM CG43078 INTRON CG43078
2R	9586179	2R_9586179_INS [dm3] 2R_13698674_INS [dm6]	A	ATCTG	1.981e^-4	0.83	INTRON fas
2R	19013233	2R_19013233_SNP [dm3] 2R_23125710_SNP [dm6]	G	T	1.983e^-4	0.83	SYNONYMOUS_CODING Klp59C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19409961	2R_19409961_SNP [dm3] 2R_23522438_SNP [dm6]	C	A	1.990e^-4	0.83	INTRON RabX1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	2449385	2L_2449385_SNP [dm3] 2L_2449385_SNP [dm6]	T	A	1.990e^-4	0.83	UPSTREAM dpp INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	11409122	2L_11409122_SNP [dm3] 2L_11409122_SNP [dm6]	A	C	1.991e^-4	0.83	INTERGENIC	regulatory region REDfly_CRMs
X	6817423	X_6817423_SNP [dm3] X_6923390_SNP [dm6]	A	G	1.992e^-4	0.83	INTRON CG14431
X	20009413	X_20009413_SNP [dm3] X_20115380_SNP [dm6]	A	T	1.994e^-4	0.83	INTERGENIC
X	12155789	X_12155789_SNP [dm3] X_12261756_SNP [dm6]	G	A	1.996e^-4	0.83	INTRON Ten-a
X	21878335	X_21878335_SNP [dm3] X_22476499_SNP [dm6]	G	C	1.997e^-4	0.83	INTRON CG12576
X	18621205	X_18621205_SNP [dm3] X_18727172_SNP [dm6]	T	C	1.998e^-4	0.83	UPSTREAM CCKLR-17D1 INTERGENIC
2R	11611598	2R_11611598_SNP [dm3] 2R_15724093_SNP [dm6]	G	A	2.002e^-4	0.83	INTERGENIC
3L	20888236	3L_20888236_SNP [dm3] 3L_20895136_SNP [dm6]	A	G	2.006e^-4	0.83	INTERGENIC
2L	9951369	2L_9951369_SNP [dm3] 2L_9951369_SNP [dm6]	C	G	2.012e^-4	0.83	UPSTREAM mir-87 DOWNSTREAM CG13126 INTERGENIC
2L	9212955	2L_9212955_SNP [dm3] 2L_9212955_SNP [dm6]	T	G	2.019e^-4	0.83	INTRON tai
3L	18540740	3L_18540740_SNP [dm3] 3L_18547640_SNP [dm6]	T	A	2.020e^-4	0.83	INTERGENIC
3R	9958515	3R_9958515_SNP [dm3] 3R_14132793_SNP [dm6]	G	A	2.023e^-4	0.83	UPSTREAM CG14356 INTERGENIC
3L	4606442	3L_4606442_SNP [dm3] 3L_4606442_SNP [dm6]	C	A	2.023e^-4	0.83	INTRON Src64B
2R	17933058	2R_17933058_SNP [dm3] 2R_22045553_SNP [dm6]	T	C	2.024e^-4	0.83	INTERGENIC
3L	14689120	3L_14689120_SNP [dm3] 3L_14696020_SNP [dm6]	G	A	2.026e^-4	0.83	DOWNSTREAM CG13474 INTRON ome
3R	4701574	3R_4701574_SNP [dm3] 3R_8875852_SNP [dm6]	A	T	2.028e^-4	0.83	INTRON pyd
3L	14686771	3L_14686771_SNP [dm3] 3L_14693671_SNP [dm6]	T	C	2.031e^-4	0.83	INTRON ome
3L	8647382	3L_8647382_SNP [dm3] 3L_8654282_SNP [dm6]	T	C	2.039e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9732320	3L_9732320_SNP [dm3] 3L_9739220_SNP [dm6]	C	T	2.040e^-4	0.83	SYNONYMOUS_CODING CG42268 UTR_5_PRIME CG42268	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17784519	2L_17784519_SNP [dm3] 2L_17784519_SNP [dm6]	G	T	2.042e^-4	0.83	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	8558888	2L_8558888_SNP [dm3] 2L_8558888_SNP [dm6]	C	T	2.054e^-4	0.83	INTRON Sema-1a	TF binding site mE1_TFBS_cad
2R	14446672	2R_14446672_SNP [dm3] 2R_18559167_SNP [dm6]	A	C	2.063e^-4	0.83	INTRON GEFmeso	TF binding site mE1_TFBS_chinmo
2L	15161223	2L_15161223_SNP [dm3] 2L_15161223_SNP [dm6]	T	G	2.063e^-4	0.83	DOWNSTREAM CG4168 & 1 other INTERGENIC
X	15134317	X_15134317_SNP [dm3] X_15240284_SNP [dm6]	G	C	2.070e^-4	0.83	INTERGENIC
2R	12687245	2R_12687245_SNP [dm3] 2R_16799740_SNP [dm6]	A	G	2.080e^-4	0.83	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	10803959	3R_10803959_SNP [dm3] 3R_14978237_SNP [dm6]	C	T	2.080e^-4	0.83	INTERGENIC
3L	9575293	3L_9575293_SNP [dm3] 3L_9582193_SNP [dm6]	G	A	2.084e^-4	0.83	INTRON CG42673
2L	16062764	2L_16062764_SNP [dm3] 2L_16062764_SNP [dm6]	T	A	2.085e^-4	0.83	INTRON beat-Ia
2L	5338898	2L_5338898_SNP [dm3] 2L_5338898_SNP [dm6]	T	C	2.085e^-4	0.83	UPSTREAM fusl DOWNSTREAM CG12512 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	10327571	2L_10327571_SNP [dm3] 2L_10327571_SNP [dm6]	C	T	2.087e^-4	0.83	DOWNSTREAM CG5375 INTRON RnrL
X	16848545	X_16848545_DEL [dm3] X_16954512_DEL [dm6]	AAAA	A	2.087e^-4	0.83	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15054145	2R_15054145_SNP [dm3] 2R_19166640_SNP [dm6]	T	G	2.092e^-4	0.83	INTRON CG10737	TF binding site mE1_TFBS_Trl
3R	12031839	3R_12031839_SNP [dm3] 3R_16206117_SNP [dm6]	C	A	2.095e^-4	0.83	UPSTREAM mtSSB INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	18758458	2R_18758458_SNP [dm3] 2R_22870935_SNP [dm6]	G	A	2.122e^-4	0.83	UPSTREAM CG13532 DOWNSTREAM fd59A INTERGENIC	TF binding site mE1_TFBS_cad
X	15382166	X_15382166_SNP [dm3] X_15488133_SNP [dm6]	G	T	2.148e^-4	0.83	INTRON Gmap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4847462	3L_4847462_SNP [dm3] 3L_4847462_SNP [dm6]	T	A	2.155e^-4	0.83	INTERGENIC
2R	12687558	2R_12687558_INS [dm3] 2R_16800053_INS [dm6]	A	ATTTTTTACATTAA...	2.161e^-4	0.83	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	2682089	3L_2682089_SNP [dm3] 3L_2682089_SNP [dm6]	A	T	2.166e^-4	0.83	INTRON Fife
3L	14385314	3L_14385314_DEL [dm3] 3L_14392214_DEL [dm6]	ATAAAAA	A	2.168e^-4	0.83	INTERGENIC
3L	9726657	3L_9726657_INS [dm3] 3L_9733557_INS [dm6]	G	AA	2.171e^-4	0.83	DOWNSTREAM mir-4986 & 1 other INTRON CG6749
2R	18206472	2R_18206472_SNP [dm3] 2R_22318967_SNP [dm6]	G	A	2.185e^-4	0.83	DOWNSTREAM CR44756 INTRON Gp150	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl mE1_TFBS_zfh1
3R	4400876	3R_4400876_INS [dm3] 3R_8575154_INS [dm6]	T	TT	2.188e^-4	0.83	INTERGENIC
2L	9911839	2L_9911839_SNP [dm3] 2L_9911839_SNP [dm6]	G	T	2.191e^-4	0.83	INTRON Etl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	22375670	3L_22375670_SNP [dm3] 3L_22382570_SNP [dm6]	G	A	2.192e^-4	0.83	INTRON Ten-m	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	18119299	3R_18119299_SNP [dm3] 3R_22293577_SNP [dm6]	A	T	2.192e^-4	0.83	SYNONYMOUS_CODING SKIP DOWNSTREAM mir-1010	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17666757	3R_17666757_SNP [dm3] 3R_21841035_SNP [dm6]	A	C	2.233e^-4	0.83	INTERGENIC
2R	18796668	2R_18796668_SNP [dm3] 2R_22909145_SNP [dm6]	G	A	2.240e^-4	0.83	INTRON nahoda
2L	11829815	2L_11829815_SNP [dm3] 2L_11829815_SNP [dm6]	T	C	2.251e^-4	0.83	UPSTREAM esc INTRON Pde1c	TF binding site mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
2L	6101662	2L_6101662_SNP [dm3] 2L_6101662_SNP [dm6]	C	A	2.252e^-4	0.83	INTRON stai
3L	2377915	3L_2377915_SNP [dm3] 3L_2377915_SNP [dm6]	T	C	2.253e^-4	0.83	UTR_5_PRIME CG45186 UPSTREAM CG15877 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	11037155	2R_11037155_SNP [dm3] 2R_15149650_SNP [dm6]	G	C	2.254e^-4	0.83	UTR_3_PRIME CG7544
3R	18614634	3R_18614634_SNP [dm3] 3R_22788912_SNP [dm6]	A	G	2.259e^-4	0.83	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19564911	2R_19564911_SNP [dm3] 2R_23677388_SNP [dm6]	T	A	2.260e^-4	0.83	INTRON Pde8	TF binding site mE1_TFBS_cad
X	20526879	X_20526879_SNP [dm3] X_20655852_SNP [dm6]	C	T	2.262e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	6105630	3R_6105630_SNP [dm3] 3R_10279908_SNP [dm6]	T	A	2.263e^-4	0.83	INTRON CG43143
2L	3231391	2L_3231391_SNP [dm3] 2L_3231391_SNP [dm6]	C	T	2.273e^-4	0.83	INTERGENIC
X	4206654	X_4206654_SNP [dm3] X_4312621_SNP [dm6]	G	A	2.280e^-4	0.83	UPSTREAM CG15579 INTRON CR44957
3R	26237660	3R_26237660_SNP [dm3] 3R_30411938_SNP [dm6]	G	A	2.285e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21046629	3L_21046629_SNP [dm3] 3L_21053529_SNP [dm6]	G	A	2.297e^-4	0.83	INTRON siz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	5562527	3R_5562527_SNP [dm3] 3R_9736805_SNP [dm6]	A	G	2.318e^-4	0.83	SYNONYMOUS_CODING CG12950
3L	17797396	3L_17797396_SNP [dm3] 3L_17804296_SNP [dm6]	A	G	2.329e^-4	0.83	SYNONYMOUS_CODING CG5589 DOWNSTREAM CG32187	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	14608070	X_14608070_SNP [dm3] X_14714037_SNP [dm6]	T	A	2.334e^-4	0.83	INTRON NetB
3R	7367748	3R_7367748_SNP [dm3] 3R_11542026_SNP [dm6]	G	T	2.335e^-4	0.83	INTRON dpr4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	11829826	2L_11829826_SNP [dm3] 2L_11829826_SNP [dm6]	T	A	2.339e^-4	0.83	UPSTREAM esc INTRON Pde1c	TF binding site mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
2L	19741030	2L_19741030_SNP [dm3] 2L_19741030_SNP [dm6]	A	T	2.341e^-4	0.83	EXON CR44906	TF binding site mE1_TFBS_Trl
3R	15239904	3R_15239904_SNP [dm3] 3R_19414182_SNP [dm6]	A	C	2.341e^-4	0.83	INTRON CG31221	TF binding site mE1_TFBS_inv
2R	18810179	2R_18810179_SNP [dm3] 2R_22922656_SNP [dm6]	T	G	2.343e^-4	0.83	NON_SYNONYMOUS_CODING Nup214
2R	18278410	2R_18278410_SNP [dm3] 2R_22390905_SNP [dm6]	A	G	2.344e^-4	0.83	INTRON CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10084995	3L_10084995_SNP [dm3] 3L_10091895_SNP [dm6]	T	G	2.347e^-4	0.83	DOWNSTREAM CG32054 INTRON dpr6 & 1 other	TF binding site BDTNP1_TFBS_twi
2R	18917538	2R_18917538_SNP [dm3] 2R_23030015_SNP [dm6]	A	G	2.349e^-4	0.83	INTRON twi & 1 other
3L	13348388	3L_13348388_SNP [dm3] 3L_13355288_SNP [dm6]	A	C	2.349e^-4	0.83	DOWNSTREAM CG17687 INTERGENIC
3L	10208838	3L_10208838_SNP [dm3] 3L_10215738_SNP [dm6]	A	G	2.351e^-4	0.83	SYNONYMOUS_CODING CG8065
2R	18555930	2R_18555930_SNP [dm3] 2R_22668425_SNP [dm6]	A	C	2.363e^-4	0.83	UPSTREAM CG13516 DOWNSTREAM CG30273 INTRON CG30269	TF binding site mE1_TFBS_cad
2R	14449242	2R_14449242_SNP [dm3] 2R_18561737_SNP [dm6]	C	G	2.370e^-4	0.83	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	13604592	2L_13604592_SNP [dm3] 2L_13604592_SNP [dm6]	A	T	2.382e^-4	0.83	INTRON kuz
3L	20854687	3L_20854687_SNP [dm3] 3L_20861587_SNP [dm6]	G	C	2.383e^-4	0.83	INTRON CG32432
X	16582648	X_16582648_SNP [dm3] X_16688615_SNP [dm6]	G	C	2.386e^-4	0.83	INTRON Sep4	TF binding site BDTNP1_TFBS_dl
X	21830481	X_21830481_SNP [dm3] X_22428646_SNP [dm6]	G	A	2.386e^-4	0.83	INTERGENIC	transposable element FlyBase
2R	18930766	2R_18930766_SNP [dm3] 2R_23043243_SNP [dm6]	G	A	2.390e^-4	0.83	UPSTREAM CG42741 INTRON twi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8558894	2L_8558894_SNP [dm3] 2L_8558894_SNP [dm6]	A	C	2.396e^-4	0.83	INTRON Sema-1a	TF binding site mE1_TFBS_cad
3L	10699904	3L_10699904_INS [dm3] 3L_10706804_INS [dm6]	A	AA	2.399e^-4	0.83	INTERGENIC
X	16867511	X_16867511_SNP [dm3] X_16973478_SNP [dm6]	T	C	2.408e^-4	0.83	SYNONYMOUS_CODING CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9212956	2L_9212956_SNP [dm3] 2L_9212956_SNP [dm6]	G	A	2.409e^-4	0.83	INTRON tai
X	4490844	X_4490844_SNP [dm3] X_4596811_SNP [dm6]	C	G	2.415e^-4	0.83	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	7115019	3R_7115019_SNP [dm3] 3R_11289297_SNP [dm6]	T	C	2.420e^-4	0.83	INTRON CR31386
3R	11589524	3R_11589524_SNP [dm3] 3R_15763802_SNP [dm6]	G	A	2.428e^-4	0.83	DOWNSTREAM CG12784 INTERGENIC
2R	6663584	2R_6663584_SNP [dm3] 2R_10776079_SNP [dm6]	A	G	2.430e^-4	0.83	INTRON CG33144
2L	9563571	2L_9563571_SNP [dm3] 2L_9563571_SNP [dm6]	A	G	2.440e^-4	0.83	INTRON jp
3R	20610902	3R_20610902_SNP [dm3] 3R_24785180_SNP [dm6]	A	G	2.452e^-4	0.83	UTR_3_PRIME CG5805 DOWNSTREAM CG42331	TF binding site mE1_TFBS_cad
3L	8573439	3L_8573439_SNP [dm3] 3L_8580339_SNP [dm6]	C	A	2.459e^-4	0.83	INTRON CG43078
3L	21322374	3L_21322374_INS [dm3] 3L_21329274_INS [dm6]	A	AACTCAA	2.464e^-4	0.83	INTRON Rab26
2R	17934011	2R_17934011_DEL [dm3] 2R_22046506_DEL [dm6]	ACATCTCACTGTAGCCGCC...	A	2.474e^-4	0.83	INTERGENIC
2R	17934031	2R_17934031_DEL [dm3] 2R_22046526_DEL [dm6]	CTCAA	C	2.474e^-4	0.83	INTERGENIC
2L	767212	2L_767212_SNP [dm3] 2L_767212_SNP [dm6]	T	C	2.479e^-4	0.83	INTERGENIC
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	2.480e^-4	0.83	INTRON dnc
X	22267450	X_22267450_SNP [dm3] X_22865614_SNP [dm6]	A	T	2.483e^-4	0.83	INTRON CG42346
3R	3343867	3R_3343867_SNP [dm3] 3R_7518145_SNP [dm6]	C	A	2.484e^-4	0.83	DOWNSTREAM Ubc84D INTERGENIC
3R	15239970	3R_15239970_SNP [dm3] 3R_19414248_SNP [dm6]	A	G	2.486e^-4	0.83	INTRON CG31221	TF binding site mE1_TFBS_inv
3R	7260387	3R_7260387_SNP [dm3] 3R_11434665_SNP [dm6]	C	A	2.487e^-4	0.83	NON_SYNONYMOUS_CODING CG6744	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	22683248	3L_22683248_SNP [dm3] 3L_22690148_SNP [dm6]	A	C	2.488e^-4	0.83	INTERGENIC
X	8542256	X_8542256_SNP [dm3] X_8648223_SNP [dm6]	T	C	2.491e^-4	0.83	INTRON oc	silencer mE1_HDAC_PRE
3L	11844598	3L_11844598_SNP [dm3] 3L_11851498_SNP [dm6]	T	C	2.493e^-4	0.83	UTR_3_PRIME CG44837
3R	15239895	3R_15239895_SNP [dm3] 3R_19414173_SNP [dm6]	T	C	2.495e^-4	0.83	INTRON CG31221	TF binding site mE1_TFBS_inv
X	14502211	X_14502211_SNP [dm3] X_14608178_SNP [dm6]	A	C	2.505e^-4	0.83	INTRON NetA
X	5557600	X_5557600_SNP [dm3] X_5663567_SNP [dm6]	G	T	2.514e^-4	0.83	UPSTREAM CG42265 EXON CR45520	TF binding site mE1_TFBS_HSA
3R	6105675	3R_6105675_SNP [dm3] 3R_10279953_SNP [dm6]	T	A	2.519e^-4	0.83	INTRON CG43143
2R	18037940	2R_18037940_SNP [dm3] 2R_22150435_SNP [dm6]	A	C	2.522e^-4	0.83	INTRON a
X	14610624	X_14610624_SNP [dm3] X_14716591_SNP [dm6]	T	G	2.531e^-4	0.83	INTRON NetB
X	14363133	X_14363133_SNP [dm3] X_14469100_SNP [dm6]	G	A	2.535e^-4	0.83	INTERGENIC
2R	19314708	2R_19314708_DEL [dm3] 2R_23427185_DEL [dm6]	AAAACAAG	A	2.542e^-4	0.83	INTRON CG9815	TF binding site BDTNP1_TFBS_dl
3R	25547412	3R_25547412_SNP [dm3] 3R_29721690_SNP [dm6]	T	C	2.545e^-4	0.83	SYNONYMOUS_CODING CG15506 UPSTREAM CG34296	TF binding site mE1_TFBS_chinmo
3L	12084598	3L_12084598_SNP [dm3] 3L_12091498_SNP [dm6]	C	T	2.546e^-4	0.83	INTERGENIC
2R	18602241	2R_18602241_SNP [dm3] 2R_22714736_SNP [dm6]	A	C	2.548e^-4	0.83	SYNONYMOUS_CODING CG30268	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	4637476	2R_4637476_SNP [dm3] 2R_8749971_SNP [dm6]	G	A	2.548e^-4	0.83	INTRON CG8740
2R	11545852	2R_11545852_SNP [dm3] 2R_15658347_SNP [dm6]	G	A	2.555e^-4	0.83	NON_SYNONYMOUS_CODING fus	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
X	3159238	X_3159238_INS [dm3] X_3265205_INS [dm6]	T	TCTCCTTTT	2.558e^-4	0.83	INTRON dnc
2R	14294564	2R_14294564_SNP [dm3] 2R_18407059_SNP [dm6]	C	T	2.567e^-4	0.83	SYNONYMOUS_CODING GstE7 UPSTREAM GstE8 DOWNSTREAM GstE6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8362306	3L_8362306_SNP [dm3] 3L_8369206_SNP [dm6]	C	A	2.568e^-4	0.83	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	8573699	2L_8573699_SNP [dm3] 2L_8573699_SNP [dm6]	C	T	2.574e^-4	0.83	INTRON Sema-1a
X	20527426	X_20527426_SNP [dm3] X_20656399_SNP [dm6]	A	G	2.575e^-4	0.83	UPSTREAM Cyp6v1 DOWNSTREAM CR45466 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	13738369	2L_13738369_SNP [dm3] 2L_13738369_SNP [dm6]	C	T	2.584e^-4	0.83	INTERGENIC
X	14795005	X_14795005_SNP [dm3] X_14900972_SNP [dm6]	A	T	2.590e^-4	0.83	DOWNSTREAM CG9512 INTRON Flo2	TF binding site BDTNP1_TFBS_twi
3L	5576297	3L_5576297_SNP [dm3] 3L_5583197_SNP [dm6]	G	T	2.590e^-4	0.83	UPSTREAM l_3_psg2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	5518264	2L_5518264_SNP [dm3] 2L_5518264_SNP [dm6]	C	T	2.591e^-4	0.83	SYNONYMOUS_CODING CG14020 DOWNSTREAM CG7382	TF binding site BDTNP1_TFBS_sna mE1_TFBS_sens
3R	15213950	3R_15213950_SNP [dm3] 3R_19388228_SNP [dm6]	G	A	2.592e^-4	0.83	DOWNSTREAM CR34285 INTRON Ino80 & 1 other	TF binding site mE1_TFBS_sens
2L	10327549	2L_10327549_SNP [dm3] 2L_10327549_SNP [dm6]	C	T	2.594e^-4	0.83	DOWNSTREAM CG5375 INTRON RnrL
3L	951327	3L_951327_SNP [dm3] 3L_951327_SNP [dm6]	A	G	2.600e^-4	0.83	INTRON Glut1
X	20527089	X_20527089_SNP [dm3] X_20656062_SNP [dm6]	G	A	2.609e^-4	0.83	DOWNSTREAM CR45466 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	6105638	3R_6105638_DEL [dm3] 3R_10279916_DEL [dm6]	ATGACTCCA	A	2.610e^-4	0.83	INTRON CG43143
3R	15239654	3R_15239654_SNP [dm3] 3R_19413932_SNP [dm6]	A	T	2.614e^-4	0.83	INTRON CG31221	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14559503	2R_14559503_SNP [dm3] 2R_18671998_SNP [dm6]	A	C	2.617e^-4	0.83	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	19915457	3L_19915457_SNP [dm3] 3L_19922357_SNP [dm6]	T	G	2.630e^-4	0.83	NON_SYNONYMOUS_CODING Su_z_12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	3452159	2L_3452159_SNP [dm3] 2L_3452159_SNP [dm6]	A	C	2.634e^-4	0.83	UPSTREAM CG12795 DOWNSTREAM Snx1 INTERGENIC
2L	8573687	2L_8573687_SNP [dm3] 2L_8573687_SNP [dm6]	C	T	2.639e^-4	0.83	INTRON Sema-1a
3L	14147707	3L_14147707_SNP [dm3] 3L_14154607_SNP [dm6]	G	T	2.648e^-4	0.83	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	13386884	3L_13386884_SNP [dm3] 3L_13393784_SNP [dm6]	T	A	2.650e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	10519073	3L_10519073_SNP [dm3] 3L_10525973_SNP [dm6]	C	T	2.654e^-4	0.83	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2244201	X_2244201_SNP [dm3] X_2350168_SNP [dm6]	C	A	2.662e^-4	0.83	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5263252	2R_5263252_SNP [dm3] 2R_9375747_SNP [dm6]	G	A	2.663e^-4	0.83	INTRON CG13954
X	14366180	X_14366180_SNP [dm3] X_14472147_SNP [dm6]	C	T	2.663e^-4	0.83	DOWNSTREAM CG9411 INTERGENIC
3L	17920743	3L_17920743_SNP [dm3] 3L_17927643_SNP [dm6]	G	A	2.664e^-4	0.83	INTERGENIC
3R	26486380	3R_26486380_SNP [dm3] 3R_30660658_SNP [dm6]	A	T	2.667e^-4	0.83	INTERGENIC
X	16582594	X_16582594_SNP [dm3] X_16688561_SNP [dm6]	C	T	2.671e^-4	0.83	INTRON Sep4	TF binding site BDTNP1_TFBS_dl
X	15134322	X_15134322_INS [dm3] X_15240289_INS [dm6]	G	GCTTAA	2.672e^-4	0.83	INTERGENIC
X	15134327	X_15134327_INS [dm3] X_15240294_INS [dm6]	T	TCTGG	2.672e^-4	0.83	INTERGENIC
X	15134335	X_15134335_SNP [dm3] X_15240302_SNP [dm6]	G	T	2.672e^-4	0.83	INTERGENIC
X	16848592	X_16848592_SNP [dm3] X_16954559_SNP [dm6]	A	G	2.677e^-4	0.83	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	8013882	X_8013882_SNP [dm3] X_8119849_SNP [dm6]	G	A	2.677e^-4	0.83	SYNONYMOUS_CODING CG2260 DOWNSTREAM CG1575	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19390248	2R_19390248_SNP [dm3] 2R_23502725_SNP [dm6]	G	T	2.689e^-4	0.83	UPSTREAM CG13559 INTERGENIC	TF binding site mE1_TFBS_inv
2R	18919852	2R_18919852_SNP [dm3] 2R_23032329_SNP [dm6]	C	T	2.695e^-4	0.83	INTRON twi & 1 other
X	15134315	X_15134315_INS [dm3] X_15240282_INS [dm6]	A	ATAT	2.700e^-4	0.83	INTERGENIC
X	15134321	X_15134321_SNP [dm3] X_15240288_SNP [dm6]	T	C	2.700e^-4	0.83	INTERGENIC
3L	7103256	3L_7103256_SNP [dm3] 3L_7110156_SNP [dm6]	G	C	2.701e^-4	0.83	INTRON form3
3R	6105410	3R_6105410_SNP [dm3] 3R_10279688_SNP [dm6]	C	G	2.702e^-4	0.83	INTRON CG43143
3L	21069642	3L_21069642_SNP [dm3] 3L_21076542_SNP [dm6]	A	G	2.708e^-4	0.83	SYNONYMOUS_CODING ko	TF binding site mE1_TFBS_cad
X	14154495	X_14154495_SNP [dm3] X_14260462_SNP [dm6]	A	G	2.708e^-4	0.83	UPSTREAM CG1461 INTERGENIC
2R	19373010	2R_19373010_SNP [dm3] 2R_23485487_SNP [dm6]	G	A	2.713e^-4	0.83	INTRON CG43795
2L	6100966	2L_6100966_SNP [dm3] 2L_6100966_SNP [dm6]	C	A	2.718e^-4	0.83	INTRON stai	TF binding site BDTNP1_TFBS_dl
3R	7247202	3R_7247202_SNP [dm3] 3R_11421480_SNP [dm6]	C	T	2.727e^-4	0.83	SYNONYMOUS_CODING ninaG UPSTREAM CG5270	TF binding site mE1_TFBS_cad
2L	13646480	2L_13646480_SNP [dm3] 2L_13646480_SNP [dm6]	C	G	2.732e^-4	0.83	INTERGENIC
3L	4841343	3L_4841343_SNP [dm3] 3L_4841343_SNP [dm6]	A	C	2.735e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	14795001	X_14795001_SNP [dm3] X_14900968_SNP [dm6]	C	T	2.737e^-4	0.83	DOWNSTREAM CG9512 INTRON Flo2	TF binding site BDTNP1_TFBS_twi
X	20527257	X_20527257_SNP [dm3] X_20656230_SNP [dm6]	C	A	2.742e^-4	0.83	UPSTREAM Cyp6v1 DOWNSTREAM CR45466 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14919030	2R_14919030_SNP [dm3] 2R_19031525_SNP [dm6]	A	T	2.749e^-4	0.83	INTRON 5-HT1B
3R	2225492	3R_2225492_SNP [dm3] 3R_6399770_SNP [dm6]	A	G	2.769e^-4	0.83	INTRON Dmtn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	18867469	2L_18867469_SNP [dm3] 2L_18867469_SNP [dm6]	A	G	2.772e^-4	0.83	UPSTREAM mir-4946 INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5557350	X_5557350_SNP [dm3] X_5663317_SNP [dm6]	T	G	2.774e^-4	0.83	UPSTREAM CG42265 EXON CR45520	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	14794974	X_14794974_SNP [dm3] X_14900941_SNP [dm6]	G	T	2.782e^-4	0.83	DOWNSTREAM CG9512 INTRON Flo2	TF binding site BDTNP1_TFBS_twi
2L	2009424	2L_2009424_SNP [dm3] 2L_2009424_SNP [dm6]	A	T	2.785e^-4	0.83	UPSTREAM tRNA:CR31944 & 1 other DOWNSTREAM Nplp4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	20901821	3L_20901821_SNP [dm3] 3L_20908721_SNP [dm6]	T	C	2.786e^-4	0.83	INTERGENIC
2R	19410923	2R_19410923_SNP [dm3] 2R_23523400_SNP [dm6]	C	T	2.802e^-4	0.83	UTR_5_PRIME RabX1 UPSTREAM mi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3R	10190461	3R_10190461_SNP [dm3] 3R_14364739_SNP [dm6]	G	T	2.805e^-4	0.83	INTRON NK7.1
2L	9567451	2L_9567451_DEL [dm3] 2L_9567451_DEL [dm6]	AA	A	2.807e^-4	0.83	UPSTREAM jp DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14689066	3L_14689066_SNP [dm3] 3L_14695966_SNP [dm6]	A	G	2.808e^-4	0.83	DOWNSTREAM CG13474 INTRON ome
2L	7701038	2L_7701038_SNP [dm3] 2L_7701038_SNP [dm6]	A	C	2.810e^-4	0.83	INTRON Tep2	TF binding site mE1_TFBS_Trl
2L	4444288	2L_4444288_SNP [dm3] 2L_4444288_SNP [dm6]	G	A	2.815e^-4	0.83	SYNONYMOUS_CODING morgue UPSTREAM Elp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	12084742	3L_12084742_SNP [dm3] 3L_12091642_SNP [dm6]	C	G	2.821e^-4	0.83	INTERGENIC
2L	19683935	2L_19683935_SNP [dm3] 2L_19683935_SNP [dm6]	T	G	2.823e^-4	0.83	INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21184729	X_21184729_SNP [dm3] X_21313702_SNP [dm6]	C	T	2.831e^-4	0.83	SYNONYMOUS_CODING CG1801
3R	25547367	3R_25547367_SNP [dm3] 3R_29721645_SNP [dm6]	C	T	2.835e^-4	0.83	SPLICE_SITE_REGION CG15506 SYNONYMOUS_CODING CG15506 UPSTREAM CG34296	TF binding site mE1_TFBS_chinmo
2R	14893202	2R_14893202_SNP [dm3] 2R_19005697_SNP [dm6]	C	T	2.841e^-4	0.83	INTRON tn	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15072750	3R_15072750_SNP [dm3] 3R_19247028_SNP [dm6]	C	G	2.852e^-4	0.83	UPSTREAM unc79 DOWNSTREAM CG5217 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19521671	2R_19521671_SNP [dm3] 2R_23634148_SNP [dm6]	A	G	2.856e^-4	0.83	INTRON retn	TF binding site mE1_TFBS_cad
2R	17060675	2R_17060675_SNP [dm3] 2R_21173170_SNP [dm6]	A	G	2.860e^-4	0.83	SPLICE_SITE_REGION Xpd INTRON Xpd	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	18858786	2L_18858786_SNP [dm3] 2L_18858786_SNP [dm6]	T	G	2.862e^-4	0.83	DOWNSTREAM tup INTRON CG10602 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	13604448	2L_13604448_SNP [dm3] 2L_13604448_SNP [dm6]	G	T	2.863e^-4	0.83	INTRON kuz
3L	4854006	3L_4854006_SNP [dm3] 3L_4854006_SNP [dm6]	G	T	2.879e^-4	0.83	INTERGENIC
2R	11666418	2R_11666418_SNP [dm3] 2R_15778913_SNP [dm6]	C	T	2.881e^-4	0.83	INTRON Zasp52
3R	5476907	3R_5476907_SNP [dm3] 3R_9651185_SNP [dm6]	T	G	2.886e^-4	0.83	UTR_3_PRIME CG9492 DOWNSTREAM Dh44
X	8241561	X_8241561_SNP [dm3] X_8347528_SNP [dm6]	A	T	2.890e^-4	0.83	INTRON nAChRalpha3
3L	23339211	3L_23339211_SNP [dm3] 3L_23346111_SNP [dm6]	G	T	2.894e^-4	0.83	DOWNSTREAM CG32230 INTERGENIC
2L	12823998	2L_12823998_SNP [dm3] 2L_12823998_SNP [dm6]	T	G	2.902e^-4	0.83	INTERGENIC
2R	15052216	2R_15052216_SNP [dm3] 2R_19164711_SNP [dm6]	T	C	2.911e^-4	0.83	INTRON CG10737	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	11518173	2L_11518173_SNP [dm3] 2L_11518173_SNP [dm6]	G	A	2.915e^-4	0.83	NON_SYNONYMOUS_CODING CG4970	TF binding site mE1_TFBS_sens
X	3008101	X_3008101_SNP [dm3] X_3114068_SNP [dm6]	T	C	2.928e^-4	0.83	INTRON kirre
3R	4205711	3R_4205711_SNP [dm3] 3R_8379989_SNP [dm6]	G	T	2.931e^-4	0.83	INTRON CG45263
3R	17553372	3R_17553372_SNP [dm3] 3R_21727650_SNP [dm6]	G	A	2.935e^-4	0.83	INTERGENIC
2R	17924372	2R_17924372_SNP [dm3] 2R_22036867_SNP [dm6]	C	T	2.942e^-4	0.83	INTRON CG34370
3L	22349295	3L_22349295_SNP [dm3] 3L_22356195_SNP [dm6]	C	T	2.956e^-4	0.83	INTRON Ten-m
2R	17266630	2R_17266630_SNP [dm3] 2R_21379125_SNP [dm6]	A	T	2.972e^-4	0.83	UTR_5_PRIME cv-2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9911855	2L_9911855_SNP [dm3] 2L_9911855_SNP [dm6]	T	C	2.981e^-4	0.83	INTRON Etl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2426709	2L_2426709_SNP [dm3] 2L_2426709_SNP [dm6]	G	T	2.982e^-4	0.83	DOWNSTREAM CR44912 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3R	1699218	3R_1699218_SNP [dm3] 3R_5873496_SNP [dm6]	G	T	2.988e^-4	0.83	SYNONYMOUS_CODING CG34113
X	16582475	X_16582475_SNP [dm3] X_16688442_SNP [dm6]	C	T	2.995e^-4	0.83	UPSTREAM Sep4 INTRON Sep4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15922188	2L_15922188_SNP [dm3] 2L_15922188_SNP [dm6]	A	G	2.996e^-4	0.83	INTRON beat-Ib
2L	8956323	2L_8956323_SNP [dm3] 2L_8956323_SNP [dm6]	C	G	3.000e^-4	0.83	UPSTREAM CG31886 INTRON CG31886
X	9287766	X_9287766_SNP [dm3] X_9393733_SNP [dm6]	T	C	3.000e^-4	0.83	INTRON mgl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	19390250	2R_19390250_SNP [dm3] 2R_23502727_SNP [dm6]	C	T	3.006e^-4	0.83	UPSTREAM CG13559 INTERGENIC	TF binding site mE1_TFBS_inv
X	14794984	X_14794984_SNP [dm3] X_14900951_SNP [dm6]	A	T	3.011e^-4	0.83	DOWNSTREAM CG9512 INTRON Flo2	TF binding site BDTNP1_TFBS_twi
2L	14628011	2L_14628011_SNP [dm3] 2L_14628011_SNP [dm6]	C	A	3.015e^-4	0.83	INTRON osp	TF binding site mE1_TFBS_HSA
2L	22060921	2L_22060921_SNP [dm3] 2L_22060921_SNP [dm6]	A	T	3.016e^-4	0.83	INTERGENIC
2R	13731553	2R_13731553_SNP [dm3] 2R_17844048_SNP [dm6]	T	C	3.027e^-4	0.83	INTRON olf186-F
X	4494874	X_4494874_SNP [dm3] X_4600841_SNP [dm6]	A	T	3.028e^-4	0.83	INTRON CR32773	TF binding site BDTNP1_TFBS_dl
2L	11506284	2L_11506284_SNP [dm3] 2L_11506284_SNP [dm6]	C	T	3.033e^-4	0.83	SYNONYMOUS_CODING spz4	TF binding site mE1_TFBS_cad
2L	7701084	2L_7701084_SNP [dm3] 2L_7701084_SNP [dm6]	G	T	3.038e^-4	0.83	INTRON Tep2	TF binding site mE1_TFBS_Trl
3R	6105689	3R_6105689_SNP [dm3] 3R_10279967_SNP [dm6]	G	A	3.041e^-4	0.83	INTRON CG43143
3L	9660995	3L_9660995_SNP [dm3] 3L_9667895_SNP [dm6]	G	A	3.043e^-4	0.83	INTRON fry
3L	12646436	3L_12646436_SNP [dm3] 3L_12653336_SNP [dm6]	A	T	3.046e^-4	0.83	UPSTREAM CR43431 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	17920188	2R_17920188_DEL [dm3] 2R_22032683_DEL [dm6]	GGGCTGG	G	3.060e^-4	0.83	INTRON CG34370
2R	19410022	2R_19410022_SNP [dm3] 2R_23522499_SNP [dm6]	A	G	3.061e^-4	0.83	INTRON RabX1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	10101096	2R_10101096_DEL [dm3] 2R_14213591_DEL [dm6]	ATTTT	A	3.069e^-4	0.83	INTERGENIC
2L	8567385	2L_8567385_SNP [dm3] 2L_8567385_SNP [dm6]	T	C	3.074e^-4	0.83	INTRON Sema-1a
2R	11538811	2R_11538811_SNP [dm3] 2R_15651306_SNP [dm6]	A	G	3.077e^-4	0.83	DOWNSTREAM CG42524 INTRON CG42524
X	20528488	X_20528488_SNP [dm3] X_20657461_SNP [dm6]	G	T	3.077e^-4	0.83	UTR_5_PRIME Cyp6v1 UPSTREAM Cyp6v1 INTRON Cyp6v1 EXON CR45466	TF binding site BDTNP1_TFBS_dl
X	4574117	X_4574117_SNP [dm3] X_4680084_SNP [dm6]	T	A	3.078e^-4	0.83	UTR_3_PRIME Pp2C1 UPSTREAM rap DOWNSTREAM Pp2C1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	19304821	2R_19304821_SNP [dm3] 2R_23417298_SNP [dm6]	A	G	3.081e^-4	0.83	DOWNSTREAM CG30411 INTRON CG9812
X	5554487	X_5554487_SNP [dm3] X_5660454_SNP [dm6]	T	A	3.082e^-4	0.83	SYNONYMOUS_CODING CG42265	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11538193	2R_11538193_SNP [dm3] 2R_15650688_SNP [dm6]	C	T	3.085e^-4	0.83	DOWNSTREAM CG42524 INTRON CG42524
2R	11538539	2R_11538539_SNP [dm3] 2R_15651034_SNP [dm6]	G	A	3.085e^-4	0.83	DOWNSTREAM CG42524 INTRON CG42524
2R	11539659	2R_11539659_SNP [dm3] 2R_15652154_SNP [dm6]	C	T	3.085e^-4	0.83	INTRON CG42524
X	4094245	X_4094245_SNP [dm3] X_4200212_SNP [dm6]	A	G	3.088e^-4	0.83	INTRON Fas2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12890089	2L_12890089_SNP [dm3] 2L_12890089_SNP [dm6]	C	T	3.092e^-4	0.83	INTERGENIC
2L	17470495	2L_17470495_SNP [dm3] 2L_17470495_SNP [dm6]	A	G	3.097e^-4	0.83	INTRON BicD
3R	24206356	3R_24206356_SNP [dm3] 3R_28380634_SNP [dm6]	C	A	3.097e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2L	9562896	2L_9562896_SNP [dm3] 2L_9562896_SNP [dm6]	C	T	3.101e^-4	0.83	INTRON jp
2L	7058946	2L_7058946_SNP [dm3] 2L_7058946_SNP [dm6]	A	G	3.110e^-4	0.83	SYNONYMOUS_CODING Mnn1 DOWNSTREAM CG31907	TF binding site mE1_TFBS_cad
2L	19725430	2L_19725430_SNP [dm3] 2L_19725430_SNP [dm6]	A	T	3.111e^-4	0.83	INTRON Lar
3R	24722965	3R_24722965_SNP [dm3] 3R_28897243_SNP [dm6]	C	T	3.117e^-4	0.83	INTRON Doa
2L	5185419	2L_5185419_SNP [dm3] 2L_5185419_SNP [dm6]	A	G	3.124e^-4	0.83	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2949751	3L_2949751_SNP [dm3] 3L_2949751_SNP [dm6]	C	T	3.129e^-4	0.83	DOWNSTREAM CG32846 INTRON Shab
2R	18278764	2R_18278764_SNP [dm3] 2R_22391259_SNP [dm6]	A	C	3.131e^-4	0.83	INTRON CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	14385441	3L_14385441_SNP [dm3] 3L_14392341_SNP [dm6]	A	G	3.131e^-4	0.83	INTERGENIC
3L	12023776	3L_12023776_SNP [dm3] 3L_12030676_SNP [dm6]	G	T	3.140e^-4	0.83	INTRON rols	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	20452871	2R_20452871_DEL [dm3] 2R_24565348_DEL [dm6]	ATTA	A	3.141e^-4	0.83	UPSTREAM uri DOWNSTREAM CG11414 INTERGENIC	TF binding site mE1_TFBS_cad
2L	19917528	2L_19917528_SNP [dm3] 2L_19917528_SNP [dm6]	G	T	3.142e^-4	0.83	UPSTREAM sick INTRON sick	TF binding site mE1_TFBS_Trl
X	19096995	X_19096995_SNP [dm3] X_19202962_SNP [dm6]	A	T	3.144e^-4	0.83	SYNONYMOUS_CODING Ulp1 UPSTREAM CG7990
3L	2531486	3L_2531486_SNP [dm3] 3L_2531486_SNP [dm6]	T	G	3.148e^-4	0.83	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	9911228	3L_9911228_SNP [dm3] 3L_9918128_SNP [dm6]	T	C	3.149e^-4	0.83	INTRON CG34356
3R	6647730	3R_6647730_SNP [dm3] 3R_10822008_SNP [dm6]	T	C	3.159e^-4	0.83	INTERGENIC
2L	13604602	2L_13604602_SNP [dm3] 2L_13604602_SNP [dm6]	T	G	3.160e^-4	0.83	INTRON kuz
3R	19963607	3R_19963607_SNP [dm3] 3R_24137885_SNP [dm6]	T	A	3.165e^-4	0.83	UPSTREAM Npc2f DOWNSTREAM Sec10 INTERGENIC
3R	21413234	3R_21413234_SNP [dm3] 3R_25587512_SNP [dm6]	G	C	3.174e^-4	0.83	INTRON msi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	12392489	2R_12392489_SNP [dm3] 2R_16504984_SNP [dm6]	G	T	3.178e^-4	0.83	INTRON Sema-2a
2L	9567458	2L_9567458_SNP [dm3] 2L_9567458_SNP [dm6]	G	C	3.181e^-4	0.83	UPSTREAM jp DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25671505	3R_25671505_SNP [dm3] 3R_29845783_SNP [dm6]	T	A	3.183e^-4	0.83	INTRON Cad99C
3L	20853258	3L_20853258_SNP [dm3] 3L_20860158_SNP [dm6]	T	G	3.186e^-4	0.83	SYNONYMOUS_CODING CG32432	TF binding site mE1_TFBS_chinmo
3R	15072766	3R_15072766_INS [dm3] 3R_19247044_INS [dm6]	A	ACCATAACTTAGAGGACCA...	3.189e^-4	0.83	UPSTREAM unc79 DOWNSTREAM CG5217 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12023711	3L_12023711_SNP [dm3] 3L_12030611_SNP [dm6]	C	T	3.191e^-4	0.83	INTRON rols	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12023824	3L_12023824_SNP [dm3] 3L_12030724_SNP [dm6]	A	G	3.191e^-4	0.83	INTRON rols	TF binding site mE1_TFBS_cad
2L	17638985	2L_17638985_SNP [dm3] 2L_17638985_SNP [dm6]	G	A	3.195e^-4	0.83	INTERGENIC
2R	17030654	2R_17030654_SNP [dm3] 2R_21143149_SNP [dm6]	A	C	3.202e^-4	0.83	SYNONYMOUS_CODING CG9406 UPSTREAM Magi & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	17449693	2R_17449693_SNP [dm3] 2R_21562188_SNP [dm6]	G	T	3.205e^-4	0.83	SYNONYMOUS_CODING CG10440
2L	13881044	2L_13881044_SNP [dm3] 2L_13881044_SNP [dm6]	G	A	3.206e^-4	0.83	INTRON CenG1A
X	5553730	X_5553730_SNP [dm3] X_5659697_SNP [dm6]	G	C	3.207e^-4	0.83	INTRON CG42265
X	20267856	X_20267856_SNP [dm3] X_20396829_SNP [dm6]	T	C	3.207e^-4	0.83	INTRON HERC2	TF binding site BDTNP1_TFBS_da
X	3324888	X_3324888_SNP [dm3] X_3430855_SNP [dm6]	G	T	3.224e^-4	0.83	INTRON CR44999 & 1 other
X	18373205	X_18373205_SNP [dm3] X_18479172_SNP [dm6]	A	G	3.228e^-4	0.83	UTR_5_PRIME CG32547 UPSTREAM CR45714 DOWNSTREAM Hayan
2R	12687403	2R_12687403_SNP [dm3] 2R_16799898_SNP [dm6]	T	G	3.229e^-4	0.83	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	12023798	3L_12023798_SNP [dm3] 3L_12030698_SNP [dm6]	T	A	3.231e^-4	0.83	INTRON rols	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12023806	3L_12023806_SNP [dm3] 3L_12030706_SNP [dm6]	C	G	3.231e^-4	0.83	INTRON rols	TF binding site mE1_TFBS_cad
2L	13642443	2L_13642443_SNP [dm3] 2L_13642443_SNP [dm6]	G	A	3.231e^-4	0.83	START_GAINED ics UTR_5_PRIME ics UPSTREAM CR44726 & 1 other	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	8404189	X_8404189_SNP [dm3] X_8510156_SNP [dm6]	G	A	3.244e^-4	0.83	UTR_5_PRIME CG33181 INTRON CG33181	TF binding site BDTNP1_TFBS_dl
3L	1939492	3L_1939492_INS [dm3] 3L_1939492_INS [dm6]	G	GGCTGGG	3.246e^-4	0.83	UPSTREAM CG5687 EXON CR44536
2L	13605103	2L_13605103_DEL [dm3] 2L_13605103_DEL [dm6]	GTTGAGACCCACTCGGTTCA...	G	3.253e^-4	0.83	INTRON kuz
3L	12998735	3L_12998735_SNP [dm3] 3L_13005635_SNP [dm6]	C	A	3.264e^-4	0.83	INTERGENIC
X	20527839	X_20527839_SNP [dm3] X_20656812_SNP [dm6]	C	A	3.270e^-4	0.83	UPSTREAM Cyp6v1 DOWNSTREAM CR45466 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	13740760	2R_13740760_INS [dm3] 2R_17853255_INS [dm6]	C	CC	3.270e^-4	0.83	UPSTREAM CG30323 INTRON olf186-F	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9561445	2L_9561445_SNP [dm3] 2L_9561445_SNP [dm6]	A	T	3.271e^-4	0.83	INTRON jp
2L	7615825	2L_7615825_SNP [dm3] 2L_7615825_SNP [dm6]	C	A	3.272e^-4	0.83	NON_SYNONYMOUS_CODING CG6739 UTR_3_PRIME CG6739
3L	14247504	3L_14247504_SNP [dm3] 3L_14254404_SNP [dm6]	C	T	3.277e^-4	0.83	INTERGENIC
3L	6187516	3L_6187516_SNP [dm3] 3L_6194416_SNP [dm6]	G	T	3.280e^-4	0.83	NON_SYNONYMOUS_CODING Trn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	4332923	3R_4332923_SNP [dm3] 3R_8507201_SNP [dm6]	C	T	3.282e^-4	0.83	INTERGENIC
3L	12023773	3L_12023773_SNP [dm3] 3L_12030673_SNP [dm6]	G	A	3.283e^-4	0.83	INTRON rols	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	19045894	X_19045894_SNP [dm3] X_19151861_SNP [dm6]	C	T	3.296e^-4	0.83	SYNONYMOUS_CODING RhoGAP18B INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl
3L	21322928	3L_21322928_SNP [dm3] 3L_21329828_SNP [dm6]	C	A	3.309e^-4	0.83	SYNONYMOUS_CODING Rab26 INTRON Rab26
2R	19024055	2R_19024055_SNP [dm3] 2R_23136532_SNP [dm6]	A	G	3.316e^-4	0.83	INTERGENIC
2R	15138743	2R_15138743_DEL [dm3] 2R_19251238_DEL [dm6]	CGGGC	C	3.323e^-4	0.83	FRAME_SHIFT CG33454 DOWNSTREAM wbl
3L	13993525	3L_13993525_SNP [dm3] 3L_14000425_SNP [dm6]	G	A	3.325e^-4	0.83	SYNONYMOUS_CODING CG8783	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10026374	2R_10026374_SNP [dm3] 2R_14138869_SNP [dm6]	G	A	3.332e^-4	0.83	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	19600188	X_19600188_SNP [dm3] X_19706155_SNP [dm6]	G	C	3.333e^-4	0.83	DOWNSTREAM meso18E INTRON CG14230	TF binding site mE1_TFBS_cad
2R	16288962	2R_16288962_DEL [dm3] 2R_20401457_DEL [dm6]	CTTCG	C	3.334e^-4	0.83	INTERGENIC
3R	14100882	3R_14100882_SNP [dm3] 3R_18275160_SNP [dm6]	A	C	3.337e^-4	0.83	UPSTREAM Vps39 INTRON eIF-1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	10422947	3L_10422947_SNP [dm3] 3L_10429847_SNP [dm6]	C	T	3.347e^-4	0.83	UTR_3_PRIME Ir67b
3L	16245081	3L_16245081_SNP [dm3] 3L_16251981_SNP [dm6]	G	T	3.350e^-4	0.83	SYNONYMOUS_CODING CG13055	TF binding site mE1_TFBS_chinmo
X	14652960	X_14652960_SNP [dm3] X_14758927_SNP [dm6]	G	A	3.354e^-4	0.83	SYNONYMOUS_CODING CG15890	TF binding site BDTNP1_TFBS_da
3L	7240207	3L_7240207_SNP [dm3] 3L_7247107_SNP [dm6]	A	C	3.358e^-4	0.83	NON_SYNONYMOUS_CODING Cdc27	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	17797639	3L_17797639_SNP [dm3] 3L_17804539_SNP [dm6]	A	G	3.360e^-4	0.83	NON_SYNONYMOUS_CODING CG5589 DOWNSTREAM CG32187	TF binding site mE1_TFBS_cad mE1_TFBS_eve
2L	21624392	2L_21624392_SNP [dm3] 2L_21624392_SNP [dm6]	T	A	3.383e^-4	0.83	UPSTREAM CG2201 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9681396	3L_9681396_SNP [dm3] 3L_9688296_SNP [dm6]	A	T	3.384e^-4	0.83	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25546509	3R_25546509_SNP [dm3] 3R_29720787_SNP [dm6]	A	T	3.385e^-4	0.83	INTRON CG15506
X	15843201	X_15843201_DEL [dm3] X_15949168_DEL [dm6]	TTGAATTACACAT...	T	3.389e^-4	0.83	INTRON mmd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20472342	2R_20472342_SNP [dm3] 2R_24584819_SNP [dm6]	T	C	3.398e^-4	0.83	INTRON pio
X	21183183	X_21183183_SNP [dm3] X_21312156_SNP [dm6]	T	C	3.402e^-4	0.83	SYNONYMOUS_CODING CG1801
X	1625757	X_1625757_SNP [dm3] X_1731724_SNP [dm6]	A	C	3.402e^-4	0.83	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	10895007	X_10895007_SNP [dm3] X_11000974_SNP [dm6]	A	G	3.408e^-4	0.83	INTRON CG42339
3R	10127837	3R_10127837_SNP [dm3] 3R_14302115_SNP [dm6]	G	A	3.413e^-4	0.83	UTR_3_PRIME CG12207 UPSTREAM CG3259
2L	4595970	2L_4595970_SNP [dm3] 2L_4595970_SNP [dm6]	G	A	3.414e^-4	0.83	UPSTREAM dp INTRON dp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3547722	3L_3547722_SNP [dm3] 3L_3547722_SNP [dm6]	T	C	3.418e^-4	0.83	INTRON Eip63E
2R	18796669	2R_18796669_SNP [dm3] 2R_22909146_SNP [dm6]	A	T	3.420e^-4	0.83	INTRON nahoda
2R	11538008	2R_11538008_SNP [dm3] 2R_15650503_SNP [dm6]	T	A	3.425e^-4	0.83	DOWNSTREAM CG42524 INTRON CG42524
2L	6411996	2L_6411996_SNP [dm3] 2L_6411996_SNP [dm6]	T	G	3.443e^-4	0.83	UPSTREAM CG13982 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	21878369	X_21878369_SNP [dm3] X_22476533_SNP [dm6]	A	T	3.451e^-4	0.83	INTRON CG12576
2L	13604655	2L_13604655_SNP [dm3] 2L_13604655_SNP [dm6]	G	A	3.454e^-4	0.83	INTRON kuz
2R	16969831	2R_16969831_SNP [dm3] 2R_21082326_SNP [dm6]	T	C	3.455e^-4	0.83	INTRON Treh
2R	17920112	2R_17920112_SNP [dm3] 2R_22032607_SNP [dm6]	G	T	3.480e^-4	0.83	INTRON CG34370
2R	4934053	2R_4934053_SNP [dm3] 2R_9046548_SNP [dm6]	A	G	3.482e^-4	0.83	SYNONYMOUS_CODING CG13743 UTR_3_PRIME CG13743
2L	11379370	2L_11379370_SNP [dm3] 2L_11379370_SNP [dm6]	T	G	3.488e^-4	0.83	INTERGENIC	regulatory region REDfly_CRMs
X	18659700	X_18659700_SNP [dm3] X_18765667_SNP [dm6]	A	T	3.501e^-4	0.83	INTRON CCKLR-17D3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14098709	3L_14098709_SNP [dm3] 3L_14105609_SNP [dm6]	T	A	3.505e^-4	0.83	INTRON Sox21a	TF binding site mE1_TFBS_Kr
X	12421248	X_12421248_SNP [dm3] X_12527215_SNP [dm6]	A	G	3.509e^-4	0.83	INTRON CG43921	TF binding site BDTNP1_TFBS_dl
3L	3794412	3L_3794412_SNP [dm3] 3L_3794412_SNP [dm6]	C	T	3.510e^-4	0.83	INTRON CG32264
2R	3138154	2R_3138154_SNP [dm3] 2R_7250649_SNP [dm6]	A	G	3.511e^-4	0.83	UTR_3_PRIME Gadd45	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21413514	3R_21413514_SNP [dm3] 3R_25587792_SNP [dm6]	T	A	3.515e^-4	0.83	INTRON msi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13570329	3R_13570329_SNP [dm3] 3R_17744607_SNP [dm6]	A	C	3.517e^-4	0.83	INTRON TyrRII	TF binding site mE1_TFBS_cad
2L	9567388	2L_9567388_MNP [dm3] 2L_9567388_MNP [dm6]	ATTT	GAAA	3.519e^-4	0.83	UPSTREAM jp DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	18535881	2R_18535881_SNP [dm3] 2R_22648376_SNP [dm6]	G	T	3.520e^-4	0.83	NON_SYNONYMOUS_CODING CG34445 UPSTREAM CG34446 DOWNSTREAM CG3746
2R	10417824	2R_10417824_SNP [dm3] 2R_14530319_SNP [dm6]	A	G	3.521e^-4	0.83	INTRON ttv
X	5557799	X_5557799_SNP [dm3] X_5663766_SNP [dm6]	T	C	3.523e^-4	0.83	UPSTREAM CG42265 DOWNSTREAM Sirt4 EXON CR45520
X	5441216	X_5441216_SNP [dm3] X_5547183_SNP [dm6]	C	T	3.526e^-4	0.83	INTRON Vsx2	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	6729922	2R_6729922_SNP [dm3] 2R_10842417_SNP [dm6]	A	T	3.528e^-4	0.83	SYNONYMOUS_CODING CG30015	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2259179	2L_2259179_SNP [dm3] 2L_2259179_SNP [dm6]	A	C	3.529e^-4	0.83	DOWNSTREAM CR44788 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	1631162	X_1631162_SNP [dm3] X_1737129_SNP [dm6]	T	A	3.530e^-4	0.83	UTR_3_PRIME Scgdelta
2L	4609612	2L_4609612_SNP [dm3] 2L_4609612_SNP [dm6]	A	C	3.545e^-4	0.83	INTRON dp
3L	718193	3L_718193_INS [dm3] 3L_718193_INS [dm6]	A	TGCGAATTTTCGTCCG...	3.549e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10004007	3L_10004007_SNP [dm3] 3L_10010907_SNP [dm6]	C	T	3.556e^-4	0.83	INTRON dpr6
3R	6620490	3R_6620490_SNP [dm3] 3R_10794768_SNP [dm6]	C	G	3.565e^-4	0.83	SYNONYMOUS_CODING CG14692
3L	9593536	3L_9593536_SNP [dm3] 3L_9600436_SNP [dm6]	T	A	3.569e^-4	0.83	DOWNSTREAM CG3088 & 1 other INTERGENIC
2R	19964803	2R_19964803_SNP [dm3] 2R_24077280_SNP [dm6]	T	C	3.575e^-4	0.83	SYNONYMOUS_CODING Mlp60A DOWNSTREAM CG10339	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23777427	3R_23777427_SNP [dm3] 3R_27951705_SNP [dm6]	A	G	3.579e^-4	0.83	SYNONYMOUS_CODING Gp93 DOWNSTREAM CG4951	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	19433245	X_19433245_SNP [dm3] X_19539212_SNP [dm6]	T	G	3.580e^-4	0.83	INTRON CG32532
3R	13096875	3R_13096875_SNP [dm3] 3R_17271153_SNP [dm6]	C	T	3.582e^-4	0.83	UPSTREAM CR44258 INTERGENIC
2L	9571523	2L_9571523_SNP [dm3] 2L_9571523_SNP [dm6]	C	G	3.584e^-4	0.83	SYNONYMOUS_CODING CG3838
3R	4205601	3R_4205601_SNP [dm3] 3R_8379879_SNP [dm6]	A	G	3.584e^-4	0.83	INTRON CG45263
2R	10834948	2R_10834948_SNP [dm3] 2R_14947443_SNP [dm6]	T	G	3.612e^-4	0.83	INTRON aPKC	TF binding site BDTNP1_TFBS_bcd
3L	10000557	3L_10000557_SNP [dm3] 3L_10007457_SNP [dm6]	T	C	3.627e^-4	0.83	INTRON dpr6
X	2841712	X_2841712_SNP [dm3] X_2947679_SNP [dm6]	C	G	3.635e^-4	0.83	UPSTREAM CG3603 DOWNSTREAM CG17959 INTRON kirre
3L	9936741	3L_9936741_SNP [dm3] 3L_9943641_SNP [dm6]	A	C	3.642e^-4	0.83	INTRON CG34356
2R	19390085	2R_19390085_SNP [dm3] 2R_23502562_SNP [dm6]	A	G	3.645e^-4	0.83	UPSTREAM CG13559 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	12959589	3R_12959589_SNP [dm3] 3R_17133867_SNP [dm6]	C	A	3.645e^-4	0.83	UPSTREAM CG31267 DOWNSTREAM CG31266 INTERGENIC
X	8173006	X_8173006_SNP [dm3] X_8278973_SNP [dm6]	A	C	3.645e^-4	0.83	UTR_3_PRIME nAChRalpha3
2R	19409956	2R_19409956_DEL [dm3] 2R_23522433_DEL [dm6]	GA	G	3.649e^-4	0.83	INTRON RabX1	TF binding site BDTNP1_TFBS_dl
3L	13970431	3L_13970431_SNP [dm3] 3L_13977331_SNP [dm6]	C	T	3.652e^-4	0.83	SYNONYMOUS_CODING Hsc70-1 DOWNSTREAM CG17364	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	3575149	2L_3575149_MNP [dm3] 2L_3575149_MNP [dm6]	TTG	AAT	3.658e^-4	0.83	UPSTREAM CR43822 INTERGENIC
3R	7267022	3R_7267022_SNP [dm3] 3R_11441300_SNP [dm6]	A	G	3.661e^-4	0.83	DOWNSTREAM mir-4945 INTRON CG17230 & 1 other
3R	7259839	3R_7259839_SNP [dm3] 3R_11434117_SNP [dm6]	A	C	3.663e^-4	0.83	DOWNSTREAM CG5276 INTRON CG6744	TF binding site mE1_TFBS_cad
2L	14983436	2L_14983436_SNP [dm3] 2L_14983436_SNP [dm6]	A	G	3.666e^-4	0.83	INTRON mol
3L	14385326	3L_14385326_SNP [dm3] 3L_14392226_SNP [dm6]	C	T	3.667e^-4	0.83	INTERGENIC
2R	6284161	2R_6284161_SNP [dm3] 2R_10396656_SNP [dm6]	T	G	3.668e^-4	0.83	INTRON CG42732
2R	8630707	2R_8630707_INS [dm3] 2R_12743202_INS [dm6]	G	GG	3.671e^-4	0.83	INTRON CG42663	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5434953	3L_5434953_SNP [dm3] 3L_5441853_SNP [dm6]	A	G	3.677e^-4	0.83	UTR_3_PRIME CG34391
2R	11666422	2R_11666422_SNP [dm3] 2R_15778917_SNP [dm6]	T	A	3.679e^-4	0.83	INTRON Zasp52
X	5557704	X_5557704_INS [dm3] X_5663671_INS [dm6]	A	AA	3.681e^-4	0.83	UPSTREAM CG42265 DOWNSTREAM Sirt4 EXON CR45520
X	19619410	X_19619410_SNP [dm3] X_19725377_SNP [dm6]	C	T	3.681e^-4	0.83	INTRON CG12531	TF binding site mE1_TFBS_cad
2L	18333734	2L_18333734_SNP [dm3] 2L_18333734_SNP [dm6]	T	G	3.681e^-4	0.83	INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2R	13020201	2R_13020201_SNP [dm3] 2R_17132696_SNP [dm6]	A	G	3.683e^-4	0.83	UPSTREAM Acp54A1 INTERGENIC	transposable element FlyBase
3R	12707394	3R_12707394_SNP [dm3] 3R_16881672_SNP [dm6]	A	G	3.689e^-4	0.83	INTRON iab-8	TF binding site BDTNP1_TFBS_dl
2R	12990470	2R_12990470_SNP [dm3] 2R_17102965_SNP [dm6]	T	A	3.693e^-4	0.83	NON_SYNONYMOUS_CODING CG30456 UTR_5_PRIME CG30456	TF binding site mE1_TFBS_cad
3L	9716431	3L_9716431_SNP [dm3] 3L_9723331_SNP [dm6]	A	C	3.699e^-4	0.83	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8558933	2R_8558933_SNP [dm3] 2R_12671428_SNP [dm6]	T	C	3.709e^-4	0.83	SYNONYMOUS_CODING CG42708 INTRON CG42708	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	21802210	2L_21802210_SNP [dm3] 2L_21802210_SNP [dm6]	G	A	3.710e^-4	0.83	INTERGENIC
3R	18119338	3R_18119338_SNP [dm3] 3R_22293616_SNP [dm6]	T	C	3.711e^-4	0.83	SYNONYMOUS_CODING SKIP DOWNSTREAM mir-1010	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14439510	2R_14439510_SNP [dm3] 2R_18552005_SNP [dm6]	T	C	3.718e^-4	0.83	INTERGENIC
3L	2883787	3L_2883787_SNP [dm3] 3L_2883787_SNP [dm6]	G	C	3.719e^-4	0.83	UTR_3_PRIME spz5 DOWNSTREAM CR44531	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9566888	2L_9566888_SNP [dm3] 2L_9566888_SNP [dm6]	G	C	3.720e^-4	0.83	UPSTREAM jp INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	1699230	3R_1699230_SNP [dm3] 3R_5873508_SNP [dm6]	C	G	3.740e^-4	0.83	SYNONYMOUS_CODING CG34113
3L	10835049	3L_10835049_SNP [dm3] 3L_10841949_SNP [dm6]	A	T	3.745e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	12945216	3R_12945216_DEL [dm3] 3R_17119494_DEL [dm6]	TT	T	3.746e^-4	0.83	UPSTREAM cher & 1 other INTRON cher	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19314267	2R_19314267_SNP [dm3] 2R_23426744_SNP [dm6]	A	C	3.748e^-4	0.83	UPSTREAM CG9815 INTRON CG9815	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	5557678	X_5557678_SNP [dm3] X_5663645_SNP [dm6]	A	G	3.757e^-4	0.83	UPSTREAM CG42265 DOWNSTREAM Sirt4 EXON CR45520
X	8817331	X_8817331_SNP [dm3] X_8923298_SNP [dm6]	G	A	3.762e^-4	0.83	SYNONYMOUS_CODING CG12661 UPSTREAM CG43255 INTRON rdgA
3L	9651498	3L_9651498_SNP [dm3] 3L_9658398_SNP [dm6]	T	C	3.765e^-4	0.83	INTRON fry & 1 other	TF binding site mE1_TFBS_inv
2L	3575159	2L_3575159_SNP [dm3] 2L_3575159_SNP [dm6]	C	G	3.768e^-4	0.83	UPSTREAM CR43822 INTERGENIC
2L	6894899	2L_6894899_SNP [dm3] 2L_6894899_SNP [dm6]	T	G	3.769e^-4	0.83	INTRON Nlg2
X	14795070	X_14795070_SNP [dm3] X_14901037_SNP [dm6]	T	C	3.770e^-4	0.83	DOWNSTREAM CG9512 INTRON Flo2	TF binding site BDTNP1_TFBS_twi
3L	6325913	3L_6325913_SNP [dm3] 3L_6332813_SNP [dm6]	G	A	3.772e^-4	0.83	SYNONYMOUS_CODING CG13300	TF binding site mE1_TFBS_chinmo
2R	11611584	2R_11611584_SNP [dm3] 2R_15724079_SNP [dm6]	A	C	3.776e^-4	0.83	INTERGENIC
3L	20958493	3L_20958493_SNP [dm3] 3L_20965393_SNP [dm6]	C	G	3.783e^-4	0.83	NON_SYNONYMOUS_CODING CG12983 UTR_3_PRIME CG12983
3L	11557545	3L_11557545_SNP [dm3] 3L_11564445_SNP [dm6]	T	A	3.794e^-4	0.83	UPSTREAM CG33267 DOWNSTREAM CG7394 INTERGENIC
X	12421295	X_12421295_SNP [dm3] X_12527262_SNP [dm6]	T	A	3.796e^-4	0.83	INTRON CG43921	TF binding site BDTNP1_TFBS_dl
2L	12877468	2L_12877468_SNP [dm3] 2L_12877468_SNP [dm6]	C	T	3.796e^-4	0.83	INTERGENIC
2R	17935689	2R_17935689_SNP [dm3] 2R_22048184_SNP [dm6]	G	A	3.797e^-4	0.83	INTERGENIC
2L	6725015	2L_6725015_SNP [dm3] 2L_6725015_SNP [dm6]	T	C	3.811e^-4	0.83	SYNONYMOUS_CODING Liprin-alpha	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4858589	X_4858589_SNP [dm3] X_4964556_SNP [dm6]	T	C	3.818e^-4	0.83	INTRON CR44833
X	11124559	X_11124559_SNP [dm3] X_11230526_SNP [dm6]	T	C	3.819e^-4	0.83	INTRON CG44422
2R	20317978	2R_20317978_SNP [dm3] 2R_24430455_SNP [dm6]	G	T	3.826e^-4	0.83	SYNONYMOUS_CODING CG15873 DOWNSTREAM Pgam5-2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16227833	3L_16227833_SNP [dm3] 3L_16234733_SNP [dm6]	C	G	3.829e^-4	0.83	UTR_5_PRIME l_3_72Dp DOWNSTREAM Hsc20	TF binding site mE1_TFBS_inv
3R	20298672	3R_20298672_SNP [dm3] 3R_24472950_SNP [dm6]	A	C	3.829e^-4	0.83	INTERGENIC
X	8246283	X_8246283_SNP [dm3] X_8352250_SNP [dm6]	T	G	3.829e^-4	0.83	INTRON nAChRalpha3
2L	8956259	2L_8956259_SNP [dm3] 2L_8956259_SNP [dm6]	T	G	3.833e^-4	0.83	UPSTREAM CG31886 INTRON CG31886
2R	19412322	2R_19412322_SNP [dm3] 2R_23524799_SNP [dm6]	G	A	3.841e^-4	0.83	SYNONYMOUS_CODING mi	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5480178	2L_5480178_SNP [dm3] 2L_5480178_SNP [dm6]	T	C	3.843e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	18451812	2R_18451812_SNP [dm3] 2R_22564307_SNP [dm6]	A	C	3.871e^-4	0.83	NON_SYNONYMOUS_CODING dnr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18535878	2R_18535878_SNP [dm3] 2R_22648373_SNP [dm6]	T	C	3.872e^-4	0.83	SYNONYMOUS_CODING CG34445 UPSTREAM CG34446 DOWNSTREAM CG3746
2L	9915389	2L_9915389_SNP [dm3] 2L_9915389_SNP [dm6]	A	G	3.873e^-4	0.83	DOWNSTREAM Srp54 INTRON yip2
X	16867260	X_16867260_SNP [dm3] X_16973227_SNP [dm6]	C	T	3.876e^-4	0.83	SYNONYMOUS_CODING CG45002	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12699666	3L_12699666_SNP [dm3] 3L_12706566_SNP [dm6]	A	T	3.876e^-4	0.83	INTRON mirr	TF binding site BDTNP1_TFBS_da
X	14367641	X_14367641_SNP [dm3] X_14473608_SNP [dm6]	A	G	3.885e^-4	0.83	SYNONYMOUS_CODING CG9411	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	717212	3L_717212_SNP [dm3] 3L_717212_SNP [dm6]	C	T	3.886e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9683377	3L_9683377_SNP [dm3] 3L_9690277_SNP [dm6]	C	T	3.887e^-4	0.83	INTRON CG6767	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2291081	3L_2291081_SNP [dm3] 3L_2291081_SNP [dm6]	G	A	3.893e^-4	0.83	INTRON MsR2
3L	12998685	3L_12998685_SNP [dm3] 3L_13005585_SNP [dm6]	A	G	3.896e^-4	0.83	INTERGENIC
X	20527636	X_20527636_SNP [dm3] X_20656609_SNP [dm6]	A	T	3.899e^-4	0.83	UPSTREAM Cyp6v1 DOWNSTREAM CR45466 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	539849	2L_539849_SNP [dm3] 2L_539849_SNP [dm6]	C	T	3.901e^-4	0.83	NON_SYNONYMOUS_CODING ush DOWNSTREAM lwr	TF binding site mE1_TFBS_cad
3R	18053261	3R_18053261_SNP [dm3] 3R_22227539_SNP [dm6]	G	A	3.907e^-4	0.83	INTRON SKIP
3L	6690498	3L_6690498_SNP [dm3] 3L_6697398_SNP [dm6]	G	A	3.907e^-4	0.83	INTRON SP1173
3R	5705681	3R_5705681_SNP [dm3] 3R_9879959_SNP [dm6]	G	A	3.907e^-4	0.83	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	2259236	2L_2259236_SNP [dm3] 2L_2259236_SNP [dm6]	C	T	3.908e^-4	0.83	DOWNSTREAM CR44788 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	19047041	2R_19047041_SNP [dm3] 2R_23159518_SNP [dm6]	C	A	3.912e^-4	0.83	NON_SYNONYMOUS_CODING CG9899
2L	10471653	2L_10471653_SNP [dm3] 2L_10471653_SNP [dm6]	C	A	3.913e^-4	0.83	SYNONYMOUS_CODING RluA-1	TF binding site mE1_TFBS_chinmo
X	13838383	X_13838383_SNP [dm3] X_13944350_SNP [dm6]	G	T	3.933e^-4	0.83	INTRON mamo
3L	17785004	3L_17785004_DEL [dm3] 3L_17791904_DEL [dm6]	GATTCTCTA	G	3.939e^-4	0.83	UPSTREAM CG42815 DOWNSTREAM CG42816 INTERGENIC
2R	12687381	2R_12687381_SNP [dm3] 2R_16799876_SNP [dm6]	T	A	3.940e^-4	0.83	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	14678628	3L_14678628_SNP [dm3] 3L_14685528_SNP [dm6]	C	A	3.942e^-4	0.83	SYNONYMOUS_CODING CG5048 INTRON ome
X	4540663	X_4540663_SNP [dm3] X_4646630_SNP [dm6]	C	T	3.944e^-4	0.83	INTRON HLH4C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9726673	3L_9726673_SNP [dm3] 3L_9733573_SNP [dm6]	T	C	3.949e^-4	0.83	DOWNSTREAM mir-4986 & 1 other INTRON CG6749
3L	7728697	3L_7728697_SNP [dm3] 3L_7735597_SNP [dm6]	C	T	3.966e^-4	0.83	INTRON CG32373 & 1 other
2R	3475863	2R_3475863_SNP [dm3] 2R_7588358_SNP [dm6]	G	A	3.971e^-4	0.83	UTR_3_PRIME CG1360	TF binding site mE1_TFBS_cad
3L	14684372	3L_14684372_SNP [dm3] 3L_14691272_SNP [dm6]	C	A	3.974e^-4	0.83	UPSTREAM CG13477 INTRON ome
X	21177961	X_21177961_SNP [dm3] X_21306934_SNP [dm6]	C	T	3.992e^-4	0.83	UPSTREAM CG1718 DOWNSTREAM CG1801 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	12684625	3R_12684625_SNP [dm3] 3R_16858903_SNP [dm6]	A	G	3.994e^-4	0.83	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	21194128	X_21194128_SNP [dm3] X_21323101_SNP [dm6]	C	T	3.997e^-4	0.83	UPSTREAM CG1486 INTRON Dd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h
X	12939773	X_12939773_SNP [dm3] X_13045740_SNP [dm6]	G	T	3.997e^-4	0.83	INTRON rad
2R	18387354	2R_18387354_DEL [dm3] 2R_22499849_DEL [dm6]	TAAAT	T	4.002e^-4	0.83	INTRON px
2L	5412475	2L_5412475_INS [dm3] 2L_5412475_INS [dm6]	A	ATGTTGCACAATTAGCGTTC...	4.007e^-4	0.83	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9562826	2L_9562826_SNP [dm3] 2L_9562826_SNP [dm6]	C	T	4.011e^-4	0.83	INTRON jp
X	19590304	X_19590304_SNP [dm3] X_19696271_SNP [dm6]	A	G	4.023e^-4	0.83	UPSTREAM Cdc42 INTERGENIC	transposable element FlyBase
X	8404188	X_8404188_SNP [dm3] X_8510155_SNP [dm6]	C	A	4.028e^-4	0.83	UTR_5_PRIME CG33181 INTRON CG33181	TF binding site BDTNP1_TFBS_dl
2L	8804004	2L_8804004_SNP [dm3] 2L_8804004_SNP [dm6]	T	G	4.030e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20661715	3R_20661715_SNP [dm3] 3R_24835993_SNP [dm6]	T	A	4.047e^-4	0.83	UPSTREAM sosie INTRON sosie EXON CR45216	TF binding site BDTNP1_TFBS_dl
3L	12023615	3L_12023615_SNP [dm3] 3L_12030515_SNP [dm6]	A	T	4.051e^-4	0.83	INTRON rols	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12958918	X_12958918_SNP [dm3] X_13064885_SNP [dm6]	G	A	4.059e^-4	0.83	INTRON rad
X	7706764	X_7706764_SNP [dm3] X_7812731_SNP [dm6]	A	G	4.067e^-4	0.83	INTERGENIC
2L	12167870	2L_12167870_SNP [dm3] 2L_12167870_SNP [dm6]	T	C	4.070e^-4	0.83	INTRON CG31760
X	8717448	X_8717448_SNP [dm3] X_8823415_SNP [dm6]	T	A	4.073e^-4	0.83	INTERGENIC
X	20417381	X_20417381_DEL [dm3] X_20546354_DEL [dm6]	ATA	A	4.082e^-4	0.83	INTRON RunxB
3L	7389703	3L_7389703_SNP [dm3] 3L_7396603_SNP [dm6]	A	C	4.085e^-4	0.83	SYNONYMOUS_CODING CG32379 DOWNSTREAM CG8563	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20845452	3R_20845452_SNP [dm3] 3R_25019730_SNP [dm6]	A	G	4.088e^-4	0.83	NON_SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9562535	2L_9562535_SNP [dm3] 2L_9562535_SNP [dm6]	T	C	4.089e^-4	0.83	INTRON jp
2R	11079492	2R_11079492_SNP [dm3] 2R_15191987_SNP [dm6]	A	G	4.094e^-4	0.83	DOWNSTREAM Sfp51E INTERGENIC
3R	10695984	3R_10695984_SNP [dm3] 3R_14870262_SNP [dm6]	G	A	4.110e^-4	0.83	INTRON btsz
2L	10475103	2L_10475103_SNP [dm3] 2L_10475103_SNP [dm6]	A	G	4.114e^-4	0.83	UPSTREAM RluA-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16969807	2R_16969807_SNP [dm3] 2R_21082302_SNP [dm6]	T	C	4.117e^-4	0.83	INTRON Treh
3R	7263309	3R_7263309_SNP [dm3] 3R_11437587_SNP [dm6]	A	G	4.120e^-4	0.83	UTR_3_PRIME sals UPSTREAM CG17230 DOWNSTREAM CG5281	TF binding site BDTNP1_TFBS_Med
2R	19597650	2R_19597650_SNP [dm3] 2R_23710127_SNP [dm6]	C	A	4.139e^-4	0.83	UPSTREAM l_2_not DOWNSTREAM CR45326 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25844950	3R_25844950_SNP [dm3] 3R_30019228_SNP [dm6]	G	A	4.141e^-4	0.83	SYNONYMOUS_CODING Mgat2	TF binding site mE1_TFBS_chinmo
2L	13827721	2L_13827721_SNP [dm3] 2L_13827721_SNP [dm6]	A	C	4.141e^-4	0.83	UTR_5_PRIME tam DOWNSTREAM Arpc1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	6298614	3L_6298614_SNP [dm3] 3L_6305514_SNP [dm6]	G	A	4.150e^-4	0.83	UPSTREAM CR45113 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	13250480	3R_13250480_SNP [dm3] 3R_17424758_SNP [dm6]	G	A	4.152e^-4	0.83	INTERGENIC	TF binding site BDTNP1_TFBS_z
X	1174853	X_1174853_SNP [dm3] X_1280820_SNP [dm6]	A	G	4.154e^-4	0.83	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	12026303	3L_12026303_SNP [dm3] 3L_12033203_SNP [dm6]	G	C	4.157e^-4	0.83	DOWNSTREAM CG43993 INTRON rols
2R	17421831	2R_17421831_DEL [dm3] 2R_21534326_DEL [dm6]	ATTACATTTGA...	T	4.163e^-4	0.83	INTRON Egfr	TF binding site BDTNP1_TFBS_prd
3L	20954936	3L_20954936_SNP [dm3] 3L_20961836_SNP [dm6]	G	T	4.166e^-4	0.83	UPSTREAM CG11037 DOWNSTREAM CG12983 INTRON CG10587	TF binding site BDTNP1_TFBS_prd
2L	12411891	2L_12411891_SNP [dm3] 2L_12411891_SNP [dm6]	G	A	4.168e^-4	0.83	INTRON vir-1
3R	4151663	3R_4151663_SNP [dm3] 3R_8325941_SNP [dm6]	G	A	4.171e^-4	0.83	DOWNSTREAM CG7443 INTRON Poxm
3R	5847555	3R_5847555_SNP [dm3] 3R_10021833_SNP [dm6]	C	T	4.172e^-4	0.83	UTR_5_PRIME Mical UPSTREAM Mical INTRON Mical	TF binding site mE1_TFBS_inv
2R	6848492	2R_6848492_SNP [dm3] 2R_10960987_SNP [dm6]	C	G	4.184e^-4	0.83	INTERGENIC
X	12421247	X_12421247_SNP [dm3] X_12527214_SNP [dm6]	A	T	4.188e^-4	0.83	INTRON CG43921	TF binding site BDTNP1_TFBS_dl
2L	11829840	2L_11829840_SNP [dm3] 2L_11829840_SNP [dm6]	G	T	4.196e^-4	0.83	UPSTREAM esc INTRON Pde1c	TF binding site mE1_TFBS_D mE1_TFBS_HSA
X	5557840	X_5557840_SNP [dm3] X_5663807_SNP [dm6]	A	T	4.202e^-4	0.83	UPSTREAM CG42265 DOWNSTREAM Sirt4 EXON CR45520
X	9389739	X_9389739_SNP [dm3] X_9495706_SNP [dm6]	A	C	4.202e^-4	0.83	UTR_5_PRIME mgl INTRON mgl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	16149030	2R_16149030_SNP [dm3] 2R_20261525_SNP [dm6]	T	C	4.206e^-4	0.83	UTR_3_PRIME Hsl DOWNSTREAM PCNA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16477791	2R_16477791_DEL [dm3] 2R_20590286_DEL [dm6]	GAAG	G	4.208e^-4	0.83	INTRON bl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12945221	3R_12945221_SNP [dm3] 3R_17119499_SNP [dm6]	T	A	4.212e^-4	0.83	UPSTREAM cher & 1 other INTRON cher	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7100403	2L_7100403_SNP [dm3] 2L_7100403_SNP [dm6]	G	A	4.214e^-4	0.83	SYNONYMOUS_CODING Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	13932152	2R_13932152_SNP [dm3] 2R_18044647_SNP [dm6]	T	G	4.217e^-4	0.83	SYNONYMOUS_CODING CG5770 UPSTREAM CG5773
3R	4406095	3R_4406095_SNP [dm3] 3R_8580373_SNP [dm6]	G	A	4.236e^-4	0.83	INTRON 5-HT2B
X	5408137	X_5408137_DEL [dm3] X_5514104_DEL [dm6]	CTGAATTCAGCGAAGAGC...	C	4.239e^-4	0.83	INTERGENIC
2R	11238329	2R_11238329_SNP [dm3] 2R_15350824_SNP [dm6]	T	C	4.248e^-4	0.83	INTRON unc-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8204109	2R_8204109_SNP [dm3] 2R_12316604_SNP [dm6]	G	A	4.249e^-4	0.83	NON_SYNONYMOUS_CODING CG30046	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	5892809	3R_5892809_SNP [dm3] 3R_10067087_SNP [dm6]	A	G	4.250e^-4	0.83	UPSTREAM CG33784 INTRON CG33783
X	12421262	X_12421262_DEL [dm3] X_12527229_DEL [dm6]	GT	G	4.254e^-4	0.83	INTRON CG43921	TF binding site BDTNP1_TFBS_dl
3R	4180495	3R_4180495_SNP [dm3] 3R_8354773_SNP [dm6]	A	C	4.257e^-4	0.83	INTERGENIC
X	5770015	X_5770015_SNP [dm3] X_5875982_SNP [dm6]	G	A	4.260e^-4	0.83	SYNONYMOUS_CODING mof	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9849318	X_9849318_DEL [dm3] X_9955285_DEL [dm6]	TCGACT	T	4.268e^-4	0.83	INTERGENIC
3R	18385916	3R_18385916_SNP [dm3] 3R_22560194_SNP [dm6]	G	A	4.274e^-4	0.83	INTRON CG5278
2L	11517165	2L_11517165_SNP [dm3] 2L_11517165_SNP [dm6]	A	C	4.282e^-4	0.83	UPSTREAM CG4970 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3R	7353275	3R_7353275_SNP [dm3] 3R_11527553_SNP [dm6]	C	A	4.313e^-4	0.83	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14295067	2R_14295067_SNP [dm3] 2R_18407562_SNP [dm6]	G	T	4.319e^-4	0.83	NON_SYNONYMOUS_CODING GstE7 UPSTREAM GstE8 DOWNSTREAM GstE6	TF binding site mE1_TFBS_Trl
X	21177772	X_21177772_SNP [dm3] X_21306745_SNP [dm6]	T	A	4.326e^-4	0.83	UPSTREAM CG1718 DOWNSTREAM CG1801 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	10664330	3L_10664330_SNP [dm3] 3L_10671230_SNP [dm6]	T	A	4.334e^-4	0.83	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12819325	2R_12819325_SNP [dm3] 2R_16931820_SNP [dm6]	T	C	4.336e^-4	0.83	INTRON Pkc53E
2L	7100227	2L_7100227_DEL [dm3] 2L_7100227_DEL [dm6]	AGA	A	4.337e^-4	0.83	INTRON Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	13862714	2L_13862714_SNP [dm3] 2L_13862714_SNP [dm6]	G	T	4.342e^-4	0.83	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	15292420	2L_15292420_SNP [dm3] 2L_15292420_SNP [dm6]	T	A	4.354e^-4	0.83	UPSTREAM ms_2_35Ci & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8573727	2L_8573727_SNP [dm3] 2L_8573727_SNP [dm6]	G	A	4.356e^-4	0.83	INTRON Sema-1a
3R	7113087	3R_7113087_SNP [dm3] 3R_11287365_SNP [dm6]	T	A	4.362e^-4	0.83	EXON CR31386
2L	3575147	2L_3575147_SNP [dm3] 2L_3575147_SNP [dm6]	G	A	4.370e^-4	0.83	UPSTREAM CR43822 INTERGENIC
2R	19169595	2R_19169595_SNP [dm3] 2R_23282072_SNP [dm6]	G	T	4.387e^-4	0.83	DOWNSTREAM CG3124 INTERGENIC
3R	13968571	3R_13968571_SNP [dm3] 3R_18142849_SNP [dm6]	C	G	4.395e^-4	0.83	INTERGENIC
2R	11804667	2R_11804667_SNP [dm3] 2R_15917162_SNP [dm6]	T	G	4.400e^-4	0.83	DOWNSTREAM CR44373 INTRON sli	TF binding site mE1_TFBS_cad
3L	2377940	3L_2377940_SNP [dm3] 3L_2377940_SNP [dm6]	A	T	4.400e^-4	0.83	UPSTREAM CG15877 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	21177785	X_21177785_SNP [dm3] X_21306758_SNP [dm6]	T	C	4.407e^-4	0.83	UPSTREAM CG1718 DOWNSTREAM CG1801 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	3197264	2R_3197264_SNP [dm3] 2R_7309759_SNP [dm6]	G	A	4.411e^-4	0.83	INTERGENIC
X	9849152	X_9849152_SNP [dm3] X_9955119_SNP [dm6]	T	A	4.416e^-4	0.83	INTERGENIC
X	5554165	X_5554165_DEL [dm3] X_5660132_DEL [dm6]	CATATC	C	4.419e^-4	0.83	INTRON CG42265	TF binding site mE1_TFBS_chinmo
3L	12084662	3L_12084662_SNP [dm3] 3L_12091562_SNP [dm6]	A	G	4.431e^-4	0.83	INTERGENIC
X	5769691	X_5769691_SNP [dm3] X_5875658_SNP [dm6]	T	C	4.437e^-4	0.83	SYNONYMOUS_CODING mof	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10611703	3L_10611703_SNP [dm3] 3L_10618603_SNP [dm6]	A	T	4.440e^-4	0.83	INTERGENIC
X	4561367	X_4561367_SNP [dm3] X_4667334_SNP [dm6]	G	A	4.447e^-4	0.83	UTR_3_PRIME rap UPSTREAM CG3009	TF binding site mE1_TFBS_bab1
X	7706839	X_7706839_SNP [dm3] X_7812806_SNP [dm6]	G	T	4.454e^-4	0.83	INTERGENIC
3L	20953405	3L_20953405_SNP [dm3] 3L_20960305_SNP [dm6]	G	T	4.465e^-4	0.83	UTR_3_PRIME CG10588 DOWNSTREAM CG11037 & 1 other
3R	11586520	3R_11586520_SNP [dm3] 3R_15760798_SNP [dm6]	T	A	4.469e^-4	0.83	INTERGENIC
2L	6100946	2L_6100946_SNP [dm3] 2L_6100946_SNP [dm6]	G	A	4.470e^-4	0.83	INTRON stai	TF binding site BDTNP1_TFBS_dl
2R	6530475	2R_6530475_DEL [dm3] 2R_10642970_DEL [dm6]	ATAAATCAATA...	A	4.482e^-4	0.83	INTRON Git	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	17749096	3R_17749096_SNP [dm3] 3R_21923374_SNP [dm6]	G	A	4.488e^-4	0.83	INTERGENIC
X	12421258	X_12421258_INS [dm3] X_12527225_INS [dm6]	T	ATATA	4.495e^-4	0.83	INTRON CG43921	TF binding site BDTNP1_TFBS_dl
3L	17785829	3L_17785829_SNP [dm3] 3L_17792729_SNP [dm6]	A	G	4.497e^-4	0.83	SYNONYMOUS_CODING CG42816
X	20707620	X_20707620_SNP [dm3] X_20836593_SNP [dm6]	G	A	4.501e^-4	0.83	INTRON shakB
2R	4678908	2R_4678908_SNP [dm3] 2R_8791403_SNP [dm6]	G	T	4.516e^-4	0.83	INTERGENIC
X	21837771	X_21837771_SNP [dm3] X_22435936_SNP [dm6]	T	A	4.530e^-4	0.83	INTERGENIC	transposable element FlyBase
2L	5530479	2L_5530479_SNP [dm3] 2L_5530479_SNP [dm6]	T	A	4.537e^-4	0.83	UTR_3_PRIME CG31915 DOWNSTREAM CG7277 INTRON Cap-D3
2L	3348476	2L_3348476_SNP [dm3] 2L_3348476_SNP [dm6]	A	G	4.537e^-4	0.83	INTRON E23
3L	21194659	3L_21194659_SNP [dm3] 3L_21201559_SNP [dm6]	T	G	4.539e^-4	0.83	UPSTREAM CG33056 INTRON CG33054 & 1 other
X	19020008	X_19020008_SNP [dm3] X_19125975_SNP [dm6]	T	A	4.543e^-4	0.83	INTRON tgy
2L	15161110	2L_15161110_SNP [dm3] 2L_15161110_SNP [dm6]	G	A	4.543e^-4	0.83	UPSTREAM CR44771 DOWNSTREAM CG4168 & 1 other INTERGENIC
3R	26975614	3R_26975614_SNP [dm3] 3R_31149892_SNP [dm6]	A	T	4.549e^-4	0.83	INTRON Gycbeta100B
3R	15894772	3R_15894772_DEL [dm3] 3R_20069050_DEL [dm6]	GG	A	4.549e^-4	0.83	INTERGENIC
X	21185105	X_21185105_SNP [dm3] X_21314078_SNP [dm6]	G	C	4.550e^-4	0.83	SYNONYMOUS_CODING CG1801
X	3950504	X_3950504_SNP [dm3] X_4056471_SNP [dm6]	G	A	4.560e^-4	0.83	INTERGENIC
2R	18917905	2R_18917905_SNP [dm3] 2R_23030382_SNP [dm6]	T	C	4.561e^-4	0.83	INTRON twi & 1 other
3L	10084868	3L_10084868_SNP [dm3] 3L_10091768_SNP [dm6]	C	A	4.565e^-4	0.83	DOWNSTREAM CG32054 INTRON dpr6 & 1 other	TF binding site BDTNP1_TFBS_twi
X	5557765	X_5557765_INS [dm3] X_5663732_INS [dm6]	A	AA	4.571e^-4	0.83	UPSTREAM CG42265 DOWNSTREAM Sirt4 EXON CR45520
2L	8558377	2L_8558377_SNP [dm3] 2L_8558377_SNP [dm6]	G	A	4.575e^-4	0.83	INTRON Sema-1a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	9849341	X_9849341_SNP [dm3] X_9955308_SNP [dm6]	C	T	4.579e^-4	0.83	INTERGENIC
3L	22375753	3L_22375753_SNP [dm3] 3L_22382653_SNP [dm6]	C	T	4.595e^-4	0.83	INTRON Ten-m	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	17235854	2R_17235854_SNP [dm3] 2R_21348349_SNP [dm6]	A	G	4.604e^-4	0.83	UPSTREAM CG9822 DOWNSTREAM CG17974 INTERGENIC
2R	12611660	2R_12611660_SNP [dm3] 2R_16724155_SNP [dm6]	A	G	4.605e^-4	0.83	INTRON CG30463
2L	3674083	2L_3674083_SNP [dm3] 2L_3674083_SNP [dm6]	T	C	4.615e^-4	0.83	INTRON CG34340
2L	22025869	2L_22025869_SNP [dm3] 2L_22025869_SNP [dm6]	C	T	4.654e^-4	0.83	DOWNSTREAM tio INTERGENIC
2R	19411371	2R_19411371_SNP [dm3] 2R_23523848_SNP [dm6]	T	G	4.656e^-4	0.83	UPSTREAM mi & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
2R	12179902	2R_12179902_SNP [dm3] 2R_16292397_SNP [dm6]	G	A	4.674e^-4	0.83	SYNONYMOUS_CODING CG7747 UPSTREAM CR43730 DOWNSTREAM CG30100 & 1 other
X	1985775	X_1985775_SNP [dm3] X_2091742_SNP [dm6]	C	T	4.675e^-4	0.83	INTRON Unc-76	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	22683223	3L_22683223_SNP [dm3] 3L_22690123_SNP [dm6]	A	G	4.678e^-4	0.83	INTERGENIC
X	14365406	X_14365406_SNP [dm3] X_14471373_SNP [dm6]	C	T	4.678e^-4	0.83	INTERGENIC
2L	19734159	2L_19734159_SNP [dm3] 2L_19734159_SNP [dm6]	C	T	4.686e^-4	0.83	SYNONYMOUS_CODING CG10462	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	22419921	3L_22419921_SNP [dm3] 3L_22426821_SNP [dm6]	T	C	4.697e^-4	0.83	INTERGENIC
2R	11828254	2R_11828254_SNP [dm3] 2R_15940749_SNP [dm6]	G	C	4.700e^-4	0.83	SYNONYMOUS_CODING CG8299 UPSTREAM Mlf	TF binding site mE1_TFBS_chinmo
2R	10098100	2R_10098100_INS [dm3] 2R_14210595_INS [dm6]	TG	GAC	4.700e^-4	0.83	INTRON Sox15	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	9716369	3L_9716369_SNP [dm3] 3L_9723269_SNP [dm6]	T	C	4.703e^-4	0.83	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	20661776	3R_20661776_SNP [dm3] 3R_24836054_SNP [dm6]	T	C	4.704e^-4	0.83	UPSTREAM sosie INTRON sosie EXON CR45216	TF binding site BDTNP1_TFBS_dl
2R	12687514	2R_12687514_INS [dm3] 2R_16800009_INS [dm6]	T	TATAT	4.708e^-4	0.83	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	9574777	2L_9574777_SNP [dm3] 2L_9574777_SNP [dm6]	T	A	4.713e^-4	0.83	SYNONYMOUS_CODING Mtpalpha	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19591672	3R_19591672_SNP [dm3] 3R_23765950_SNP [dm6]	A	G	4.718e^-4	0.83	SYNONYMOUS_CODING Lsd-1 DOWNSTREAM CG10214
2R	6732262	2R_6732262_SNP [dm3] 2R_10844757_SNP [dm6]	T	A	4.732e^-4	0.83	UPSTREAM CG30015 INTRON CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14688910	3L_14688910_SNP [dm3] 3L_14695810_SNP [dm6]	G	A	4.734e^-4	0.83	DOWNSTREAM CG13474 INTRON ome
X	13204342	X_13204342_SNP [dm3] X_13310309_SNP [dm6]	C	G	4.734e^-4	0.83	INTRON IP3K2
2L	9564119	2L_9564119_SNP [dm3] 2L_9564119_SNP [dm6]	A	G	4.744e^-4	0.83	INTRON jp
2R	11253113	2R_11253113_SNP [dm3] 2R_15365608_SNP [dm6]	C	T	4.748e^-4	0.83	INTRON unc-5	TF binding site mE1_TFBS_cad
3L	22386738	3L_22386738_SNP [dm3] 3L_22393638_SNP [dm6]	A	T	4.750e^-4	0.83	INTRON Ten-m
2R	13042201	2R_13042201_SNP [dm3] 2R_17154696_SNP [dm6]	T	C	4.754e^-4	0.83	UTR_5_PRIME CG17290 UPSTREAM CG17290
2R	20472677	2R_20472677_SNP [dm3] 2R_24585154_SNP [dm6]	A	G	4.755e^-4	0.83	INTRON pio	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17421828	2R_17421828_SNP [dm3] 2R_21534323_SNP [dm6]	A	G	4.755e^-4	0.83	INTRON Egfr	TF binding site BDTNP1_TFBS_prd
2L	10130545	2L_10130545_SNP [dm3] 2L_10130545_SNP [dm6]	A	G	4.762e^-4	0.83	INTRON CG44153
2R	18617757	2R_18617757_SNP [dm3] 2R_22730252_SNP [dm6]	G	A	4.771e^-4	0.83	UPSTREAM jbug INTRON jbug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	16200658	3L_16200658_SNP [dm3] 3L_16207558_SNP [dm6]	A	C	4.772e^-4	0.83	INTERGENIC
2L	19603113	2L_19603113_SNP [dm3] 2L_19603113_SNP [dm6]	C	T	4.775e^-4	0.83	INTRON CR44978 & 1 other

By genomic position
Variant impact
Gene name

Wing_Intervein_Area4 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results