DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.178e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.05813

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.3088	0.0703

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2304 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	21160839	X_21160839_SNP [dm3] X_21289812_SNP [dm6]	T	C	3.547e^-8	0.059	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	6.325e^-8	0.059	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21160844	X_21160844_SNP [dm3] X_21289817_SNP [dm6]	G	C	1.058e^-7	0.066	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9661317	3L_9661317_SNP [dm3] 3L_9668217_SNP [dm6]	A	G	1.928e^-6	0.566	INTRON fry	TF binding site mE1_TFBS_cad
3L	7467554	3L_7467554_SNP [dm3] 3L_7474454_SNP [dm6]	G	A	1.992e^-6	0.566	INTERGENIC
3L	9661340	3L_9661340_SNP [dm3] 3L_9668240_SNP [dm6]	C	G	2.281e^-6	0.566	INTRON fry	TF binding site mE1_TFBS_cad
3R	13570329	3R_13570329_SNP [dm3] 3R_17744607_SNP [dm6]	A	C	2.417e^-6	0.566	INTRON TyrRII	TF binding site mE1_TFBS_cad
2R	9147422	2R_9147422_SNP [dm3] 2R_13259917_SNP [dm6]	A	T	2.713e^-6	0.566	UPSTREAM CG42319 INTERGENIC
2L	376777	2L_376777_SNP [dm3] 2L_376777_SNP [dm6]	G	A	2.739e^-6	0.566	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	9661315	3L_9661315_SNP [dm3] 3L_9668215_SNP [dm6]	A	G	3.292e^-6	0.566	INTRON fry	TF binding site mE1_TFBS_cad
2L	8447278	2L_8447278_SNP [dm3] 2L_8447278_SNP [dm6]	T	G	3.321e^-6	0.566	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	10348395	2R_10348395_SNP [dm3] 2R_14460890_SNP [dm6]	C	A	3.675e^-6	0.574	INTRON Oaz	TF binding site mE1_TFBS_cad
2L	8447265	2L_8447265_SNP [dm3] 2L_8447265_SNP [dm6]	A	G	4.208e^-6	0.593	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	7467600	3L_7467600_SNP [dm3] 3L_7474500_SNP [dm6]	T	C	5.093e^-6	0.593	INTERGENIC
3L	20879759	3L_20879759_SNP [dm3] 3L_20886659_SNP [dm6]	G	T	6.705e^-6	0.593	DOWNSTREAM CR44686 INTERGENIC
3R	12898355	3R_12898355_SNP [dm3] 3R_17072633_SNP [dm6]	A	G	6.787e^-6	0.593	UTR_5_PRIME Ns1 UPSTREAM mRpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5646475	3L_5646475_SNP [dm3] 3L_5653375_SNP [dm6]	G	A	6.912e^-6	0.593	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	16202260	3L_16202260_SNP [dm3] 3L_16209160_SNP [dm6]	A	C	7.332e^-6	0.593	INTERGENIC	TF binding site mE1_TFBS_cad
X	17952263	X_17952263_SNP [dm3] X_18058230_SNP [dm6]	A	G	7.339e^-6	0.593	INTRON Sh
X	17952250	X_17952250_SNP [dm3] X_18058217_SNP [dm6]	G	A	8.149e^-6	0.593	INTRON Sh
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	8.797e^-6	0.593	INTRON dnc
3L	15639667	3L_15639667_SNP [dm3] 3L_15646567_SNP [dm6]	C	G	9.321e^-6	0.593	INTRON comm3
X	17952248	X_17952248_SNP [dm3] X_18058215_SNP [dm6]	C	A	9.404e^-6	0.593	INTRON Sh
X	21161307	X_21161307_SNP [dm3] X_21290280_SNP [dm6]	T	A	9.978e^-6	0.593	SPLICE_SITE_REGION CG1494 INTRON CG1494
3L	15483312	3L_15483312_SNP [dm3] 3L_15490212_SNP [dm6]	A	G	1.053e^-5	0.593	INTERGENIC
2R	9147438	2R_9147438_SNP [dm3] 2R_13259933_SNP [dm6]	G	A	1.061e^-5	0.593	UPSTREAM CG42319 INTERGENIC
3L	4737896	3L_4737896_SNP [dm3] 3L_4737896_SNP [dm6]	G	A	1.198e^-5	0.593	INTRON RhoGEF64C
X	4093930	X_4093930_SNP [dm3] X_4199897_SNP [dm6]	T	C	1.198e^-5	0.593	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	5646441	3L_5646441_SNP [dm3] 3L_5653341_SNP [dm6]	T	C	1.233e^-5	0.593	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sbb
2R	9147435	2R_9147435_SNP [dm3] 2R_13259930_SNP [dm6]	T	A	1.273e^-5	0.593	UPSTREAM CG42319 INTERGENIC
3L	7461509	3L_7461509_SNP [dm3] 3L_7468409_SNP [dm6]	G	T	1.292e^-5	0.593	UTR_3_PRIME CG42660 & 2 others
3L	7296139	3L_7296139_DEL [dm3] 3L_7303039_DEL [dm6]	AA	A	1.343e^-5	0.593	INTRON unc-13-4A
3R	13570405	3R_13570405_SNP [dm3] 3R_17744683_SNP [dm6]	A	C	1.345e^-5	0.593	INTRON TyrRII
3L	2645866	3L_2645866_SNP [dm3] 3L_2645866_SNP [dm6]	A	G	1.357e^-5	0.593	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17948777	X_17948777_SNP [dm3] X_18054744_SNP [dm6]	G	A	1.403e^-5	0.593	INTRON Sh
2L	16445724	2L_16445724_SNP [dm3] 2L_16445724_SNP [dm6]	C	T	1.430e^-5	0.593	SYNONYMOUS_CODING Idgf1 INTRON CG5888
X	4094020	X_4094020_SNP [dm3] X_4199987_SNP [dm6]	T	C	1.472e^-5	0.593	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5646477	3L_5646477_SNP [dm3] 3L_5653377_SNP [dm6]	T	G	1.491e^-5	0.593	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2R	9147482	2R_9147482_SNP [dm3] 2R_13259977_SNP [dm6]	A	G	1.503e^-5	0.593	UPSTREAM CG42319 INTERGENIC
X	7620847	X_7620847_SNP [dm3] X_7726814_SNP [dm6]	T	C	1.557e^-5	0.593	SYNONYMOUS_CODING NELF-B DOWNSTREAM Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1283871	3L_1283871_INS [dm3] 3L_1283871_INS [dm6]	A	AGGGGCCCCAAGTAATAAAG...	1.575e^-5	0.593	INTRON CG32333
3L	8391972	3L_8391972_SNP [dm3] 3L_8398872_SNP [dm6]	A	T	1.583e^-5	0.593	INTRON CG7120
2L	8447795	2L_8447795_SNP [dm3] 2L_8447795_SNP [dm6]	C	T	1.584e^-5	0.593	SYNONYMOUS_CODING U26 UTR_3_PRIME U26
3R	10435085	3R_10435085_SNP [dm3] 3R_14609363_SNP [dm6]	G	T	1.601e^-5	0.593	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12450024	3L_12450024_SNP [dm3] 3L_12456924_SNP [dm6]	G	A	1.630e^-5	0.593	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	8448106	2L_8448106_SNP [dm3] 2L_8448106_SNP [dm6]	G	A	1.646e^-5	0.593	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11409403	X_11409403_SNP [dm3] X_11515370_SNP [dm6]	A	T	1.674e^-5	0.593	INTRON Drak	TF binding site mE1_TFBS_Kr
3R	25912708	3R_25912708_SNP [dm3] 3R_30086986_SNP [dm6]	C	A	1.681e^-5	0.593	INTRON sima
3L	4737856	3L_4737856_SNP [dm3] 3L_4737856_SNP [dm6]	G	T	1.714e^-5	0.593	INTRON RhoGEF64C
3L	2537851	3L_2537851_SNP [dm3] 3L_2537851_SNP [dm6]	G	T	1.722e^-5	0.593	INTRON Spn
2L	20538018	2L_20538018_SNP [dm3] 2L_20538018_SNP [dm6]	C	T	1.730e^-5	0.593	INTERGENIC	TF binding site mE1_TFBS_inv
2L	16445674	2L_16445674_SNP [dm3] 2L_16445674_SNP [dm6]	G	A	1.742e^-5	0.593	NON_SYNONYMOUS_CODING Idgf1 INTRON CG5888
X	4093939	X_4093939_SNP [dm3] X_4199906_SNP [dm6]	A	C	1.744e^-5	0.593	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	2669602	2L_2669602_SNP [dm3] 2L_2669602_SNP [dm6]	G	T	1.775e^-5	0.593	UPSTREAM Gr23a INTERGENIC
2L	3245320	2L_3245320_SNP [dm3] 2L_3245320_SNP [dm6]	T	C	1.791e^-5	0.593	INTERGENIC
3L	712376	3L_712376_SNP [dm3] 3L_712376_SNP [dm6]	G	A	1.813e^-5	0.593	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	4737895	3L_4737895_SNP [dm3] 3L_4737895_SNP [dm6]	A	G	1.830e^-5	0.593	INTRON RhoGEF64C
3L	5646471	3L_5646471_SNP [dm3] 3L_5653371_SNP [dm6]	T	G	1.835e^-5	0.593	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3R	25588806	3R_25588806_SNP [dm3] 3R_29763084_SNP [dm6]	A	G	1.922e^-5	0.602	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3532941	3L_3532941_SNP [dm3] 3L_3532941_SNP [dm6]	T	C	1.927e^-5	0.602	INTRON Eip63E
3L	2645600	3L_2645600_SNP [dm3] 3L_2645600_SNP [dm6]	A	T	2.088e^-5	0.609	INTRON CG1143	TF binding site mE1_TFBS_cad
X	17952259	X_17952259_SNP [dm3] X_18058226_SNP [dm6]	T	C	2.110e^-5	0.609	INTRON Sh
X	13136787	X_13136787_SNP [dm3] X_13242754_SNP [dm6]	C	T	2.117e^-5	0.609	INTRON mew	TF binding site BDTNP1_TFBS_da
3R	15071621	3R_15071621_SNP [dm3] 3R_19245899_SNP [dm6]	C	T	2.164e^-5	0.609	INTRON unc79
3L	10702270	3L_10702270_SNP [dm3] 3L_10709170_SNP [dm6]	C	A	2.182e^-5	0.609	INTERGENIC
3R	13600672	3R_13600672_SNP [dm3] 3R_17774950_SNP [dm6]	C	T	2.240e^-5	0.609	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17952258	X_17952258_SNP [dm3] X_18058225_SNP [dm6]	C	A	2.282e^-5	0.609	INTRON Sh
3L	11276715	3L_11276715_SNP [dm3] 3L_11283615_SNP [dm6]	A	C	2.327e^-5	0.609	INTERGENIC
3L	11276725	3L_11276725_SNP [dm3] 3L_11283625_SNP [dm6]	A	T	2.327e^-5	0.609	INTERGENIC
3L	712385	3L_712385_DEL [dm3] 3L_712385_DEL [dm6]	TA	T	2.338e^-5	0.609	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	9147340	2R_9147340_DEL [dm3] 2R_13259835_DEL [dm6]	AA	C	2.343e^-5	0.609	UPSTREAM CG42319 INTERGENIC
3L	10969436	3L_10969436_SNP [dm3] 3L_10976336_SNP [dm6]	A	T	2.370e^-5	0.609	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9735039	3L_9735039_SNP [dm3] 3L_9741939_SNP [dm6]	A	T	2.371e^-5	0.609	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6788786	X_6788786_SNP [dm3] X_6894753_SNP [dm6]	A	C	2.457e^-5	0.622	INTERGENIC
2L	5160275	2L_5160275_SNP [dm3] 2L_5160275_SNP [dm6]	T	G	2.643e^-5	0.661	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7617605	X_7617605_SNP [dm3] X_7723572_SNP [dm6]	A	T	2.849e^-5	0.664	NON_SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	5475585	3L_5475585_SNP [dm3] 3L_5482485_SNP [dm6]	A	T	2.880e^-5	0.664	NON_SYNONYMOUS_CODING CG4835
3L	11168307	3L_11168307_SNP [dm3] 3L_11175207_SNP [dm6]	T	A	2.927e^-5	0.664	INTRON CG14142
3L	15483333	3L_15483333_SNP [dm3] 3L_15490233_SNP [dm6]	T	C	2.927e^-5	0.664	INTERGENIC
3R	12970762	3R_12970762_SNP [dm3] 3R_17145040_SNP [dm6]	A	T	2.970e^-5	0.664	UTR_3_PRIME m-cup DOWNSTREAM m-cup
2L	14689608	2L_14689608_SNP [dm3] 2L_14689608_SNP [dm6]	A	G	3.070e^-5	0.664	UPSTREAM osp INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13557427	3L_13557427_INS [dm3] 3L_13564327_INS [dm6]	G	TA	3.073e^-5	0.664	INTRON bru-3
3L	13557430	3L_13557430_DEL [dm3] 3L_13564330_DEL [dm6]	GTTT	G	3.073e^-5	0.664	INTRON bru-3
2L	3189062	2L_3189062_INS [dm3] 2L_3189062_INS [dm6]	G	GTTCC	3.311e^-5	0.664	INTRON CG34393
2L	606452	2L_606452_SNP [dm3] 2L_606452_SNP [dm6]	C	T	3.313e^-5	0.664	DOWNSTREAM CR43648 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8448676	2L_8448676_SNP [dm3] 2L_8448676_SNP [dm6]	G	T	3.359e^-5	0.664	SYNONYMOUS_CODING U26
3L	4557102	3L_4557102_SNP [dm3] 3L_4557102_SNP [dm6]	A	G	3.369e^-5	0.664	UPSTREAM CG42540 INTRON CG42540
3L	15483232	3L_15483232_SNP [dm3] 3L_15490132_SNP [dm6]	A	T	3.461e^-5	0.664	INTERGENIC
2L	372959	2L_372959_SNP [dm3] 2L_372959_SNP [dm6]	G	T	3.499e^-5	0.664	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	15483234	3L_15483234_SNP [dm3] 3L_15490134_SNP [dm6]	A	C	3.530e^-5	0.664	INTERGENIC
3R	2868309	3R_2868309_SNP [dm3] 3R_7042587_SNP [dm6]	G	A	3.538e^-5	0.664	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	638038	2L_638038_SNP [dm3] 2L_638038_SNP [dm6]	G	C	3.578e^-5	0.664	INTERGENIC
3L	5475581	3L_5475581_SNP [dm3] 3L_5482481_SNP [dm6]	G	A	3.588e^-5	0.664	SYNONYMOUS_CODING CG4835
X	11756760	X_11756760_SNP [dm3] X_11862727_SNP [dm6]	C	T	3.589e^-5	0.664	SYNONYMOUS_CODING ATP7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5372382	3L_5372382_SNP [dm3] 3L_5379282_SNP [dm6]	G	A	3.617e^-5	0.664	SYNONYMOUS_CODING Ir64a DOWNSTREAM CR45743
3L	712384	3L_712384_SNP [dm3] 3L_712384_SNP [dm6]	T	C	3.637e^-5	0.664	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	357751	2L_357751_SNP [dm3] 2L_357751_SNP [dm6]	G	C	3.675e^-5	0.664	SPLICE_SITE_REGION Ent1 UTR_5_PRIME Ent1 DOWNSTREAM CR45367 INTRON Ent1 EXON CR45366	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	12310548	3L_12310548_SNP [dm3] 3L_12317448_SNP [dm6]	T	G	3.695e^-5	0.664	INTERGENIC
X	17952266	X_17952266_SNP [dm3] X_18058233_SNP [dm6]	G	T	3.711e^-5	0.664	INTRON Sh
X	20434591	X_20434591_SNP [dm3] X_20563564_SNP [dm6]	A	G	3.809e^-5	0.664	INTRON RunxB
3L	12024387	3L_12024387_SNP [dm3] 3L_12031287_SNP [dm6]	G	A	3.830e^-5	0.664	INTRON rols
2R	9147337	2R_9147337_SNP [dm3] 2R_13259832_SNP [dm6]	G	C	3.831e^-5	0.664	UPSTREAM CG42319 INTERGENIC
X	6439088	X_6439088_SNP [dm3] X_6545055_SNP [dm6]	G	A	3.930e^-5	0.664	INTRON CG34417
X	21150033	X_21150033_SNP [dm3] X_21279006_SNP [dm6]	A	T	3.971e^-5	0.664	INTRON CG32521
2R	10343488	2R_10343488_SNP [dm3] 2R_14455983_SNP [dm6]	G	T	3.980e^-5	0.664	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4159131	3L_4159131_DEL [dm3] 3L_4159131_DEL [dm6]	GG	G	4.044e^-5	0.664	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	10343861	2R_10343861_SNP [dm3] 2R_14456356_SNP [dm6]	T	G	4.094e^-5	0.664	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17289541	2L_17289541_SNP [dm3] 2L_17289541_SNP [dm6]	C	T	4.113e^-5	0.664	INTERGENIC
3L	712399	3L_712399_SNP [dm3] 3L_712399_SNP [dm6]	A	T	4.122e^-5	0.664	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	711857	3L_711857_SNP [dm3] 3L_711857_SNP [dm6]	A	C	4.130e^-5	0.664	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	712348	3L_712348_SNP [dm3] 3L_712348_SNP [dm6]	G	T	4.193e^-5	0.664	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	8391974	3L_8391974_SNP [dm3] 3L_8398874_SNP [dm6]	G	A	4.203e^-5	0.664	INTRON CG7120
2R	7835259	2R_7835259_SNP [dm3] 2R_11947754_SNP [dm6]	A	C	4.236e^-5	0.664	INTRON CG13188
3L	13310290	3L_13310290_SNP [dm3] 3L_13317190_SNP [dm6]	T	G	4.275e^-5	0.664	INTERGENIC
2R	3241206	2R_3241206_DEL [dm3] 2R_7353701_DEL [dm6]	GTACA	G	4.281e^-5	0.664	INTRON Dscam1
3L	14489459	3L_14489459_SNP [dm3] 3L_14496359_SNP [dm6]	G	C	4.321e^-5	0.664	INTRON bbg	TF binding site mE1_TFBS_cad
3L	5437561	3L_5437561_SNP [dm3] 3L_5444461_SNP [dm6]	C	T	4.334e^-5	0.664	INTERGENIC
2L	19480177	2L_19480177_SNP [dm3] 2L_19480177_SNP [dm6]	A	G	4.366e^-5	0.664	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	712423	3L_712423_SNP [dm3] 3L_712423_SNP [dm6]	G	C	4.406e^-5	0.664	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	8156849	X_8156849_SNP [dm3] X_8262816_SNP [dm6]	T	C	4.513e^-5	0.664	INTRON CG1632	TF binding site BDTNP1_TFBS_da
X	9287766	X_9287766_SNP [dm3] X_9393733_SNP [dm6]	T	C	4.517e^-5	0.664	INTRON mgl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	387696	2L_387696_SNP [dm3] 2L_387696_SNP [dm6]	T	A	4.571e^-5	0.664	DOWNSTREAM al INTERGENIC
3L	712388	3L_712388_DEL [dm3] 3L_712388_DEL [dm6]	AAT	A	4.581e^-5	0.664	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712235	3L_712235_SNP [dm3] 3L_712235_SNP [dm6]	C	T	4.589e^-5	0.664	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
X	10765528	X_10765528_SNP [dm3] X_10871495_SNP [dm6]	A	G	4.598e^-5	0.664	DOWNSTREAM CG2157 & 1 other INTRON CG1637	TF binding site mE1_TFBS_sens
3L	711790	3L_711790_SNP [dm3] 3L_711790_SNP [dm6]	A	T	4.602e^-5	0.664	UTR_5_PRIME CG13896	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	2389910	2L_2389910_SNP [dm3] 2L_2389910_SNP [dm6]	A	G	4.650e^-5	0.664	SYNONYMOUS_CODING CG43750
3L	15483280	3L_15483280_SNP [dm3] 3L_15490180_SNP [dm6]	T	C	4.663e^-5	0.664	INTERGENIC
2R	9147218	2R_9147218_SNP [dm3] 2R_13259713_SNP [dm6]	T	A	4.672e^-5	0.664	UPSTREAM CG42319 INTERGENIC
2R	11976055	2R_11976055_SNP [dm3] 2R_16088550_SNP [dm6]	C	A	4.740e^-5	0.664	INTRON Dg
X	17303582	X_17303582_SNP [dm3] X_17409549_SNP [dm6]	A	G	4.805e^-5	0.664	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4737859	3L_4737859_SNP [dm3] 3L_4737859_SNP [dm6]	A	G	4.833e^-5	0.664	INTRON RhoGEF64C
3L	6754351	3L_6754351_SNP [dm3] 3L_6761251_SNP [dm6]	C	T	4.844e^-5	0.664	UPSTREAM CG32392 INTRON CG32392
3L	7777439	3L_7777439_SNP [dm3] 3L_7784339_SNP [dm6]	C	T	4.924e^-5	0.664	INTRON CG32369
3R	25776171	3R_25776171_SNP [dm3] 3R_29950449_SNP [dm6]	C	T	4.970e^-5	0.664	DOWNSTREAM TkR99D INTERGENIC
3R	20551315	3R_20551315_DEL [dm3] 3R_24725593_DEL [dm6]	CA	C	5.037e^-5	0.664	INTRON tok	TF binding site BDTNP1_TFBS_dl
2R	19073625	2R_19073625_SNP [dm3] 2R_23186102_SNP [dm6]	A	T	5.052e^-5	0.664	DOWNSTREAM CG13539 INTRON CG34371
2L	3245318	2L_3245318_SNP [dm3] 2L_3245318_SNP [dm6]	A	T	5.061e^-5	0.664	INTERGENIC
3L	12660311	3L_12660311_SNP [dm3] 3L_12667211_SNP [dm6]	G	T	5.096e^-5	0.664	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2026480	3R_2026480_SNP [dm3] 3R_6200758_SNP [dm6]	G	T	5.113e^-5	0.664	INTRON Osi24
2L	8448070	2L_8448070_SNP [dm3] 2L_8448070_SNP [dm6]	C	T	5.129e^-5	0.664	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8156894	X_8156894_INS [dm3] X_8262861_INS [dm6]	T	TTCCACGCTCCGAACCAAAT...	5.168e^-5	0.664	INTRON CG1632	TF binding site BDTNP1_TFBS_da
3L	15760221	3L_15760221_SNP [dm3] 3L_15767121_SNP [dm6]	G	C	5.183e^-5	0.664	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4817173	3L_4817173_SNP [dm3] 3L_4817173_SNP [dm6]	G	A	5.236e^-5	0.664	SYNONYMOUS_CODING Dhc64C
3R	6385538	3R_6385538_SNP [dm3] 3R_10559816_SNP [dm6]	G	A	5.300e^-5	0.664	INTRON hth	TF binding site BDTNP1_TFBS_dl
2R	6669458	2R_6669458_SNP [dm3] 2R_10781953_SNP [dm6]	T	A	5.329e^-5	0.664	UPSTREAM CR44299 INTRON CG33144	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	7477102	3L_7477102_SNP [dm3] 3L_7484002_SNP [dm6]	G	C	5.407e^-5	0.664	INTERGENIC
3L	712377	3L_712377_SNP [dm3] 3L_712377_SNP [dm6]	A	C	5.425e^-5	0.664	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	12898285	3R_12898285_SNP [dm3] 3R_17072563_SNP [dm6]	C	T	5.431e^-5	0.664	UPSTREAM mRpS11 INTRON Ns1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12971257	3R_12971257_SNP [dm3] 3R_17145535_SNP [dm6]	A	C	5.433e^-5	0.664	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3R	12971260	3R_12971260_DEL [dm3] 3R_17145538_DEL [dm6]	AGGTAAGCATCCTA...	G	5.433e^-5	0.664	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
2R	3238864	2R_3238864_SNP [dm3] 2R_7351359_SNP [dm6]	A	T	5.541e^-5	0.664	INTRON Dscam1	TF binding site mE1_TFBS_inv
3L	18645419	3L_18645419_SNP [dm3] 3L_18652319_SNP [dm6]	T	G	5.546e^-5	0.664	INTRON MYPT-75D
3L	11223898	3L_11223898_SNP [dm3] 3L_11230798_SNP [dm6]	G	T	5.551e^-5	0.664	DOWNSTREAM CR45405 & 1 other INTERGENIC
3L	15483205	3L_15483205_SNP [dm3] 3L_15490105_SNP [dm6]	G	A	5.577e^-5	0.664	INTERGENIC
3R	4362491	3R_4362491_SNP [dm3] 3R_8536769_SNP [dm6]	A	G	5.663e^-5	0.664	INTERGENIC
3L	4817350	3L_4817350_SNP [dm3] 3L_4817350_SNP [dm6]	G	A	5.700e^-5	0.664	SYNONYMOUS_CODING Dhc64C
X	17899769	X_17899769_DEL [dm3] X_18005736_DEL [dm6]	AAAGG	A	5.732e^-5	0.664	DOWNSTREAM CG12672 INTRON Sh
X	7617541	X_7617541_SNP [dm3] X_7723508_SNP [dm6]	C	A	5.739e^-5	0.664	SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	17505412	2R_17505412_SNP [dm3] 2R_21617907_SNP [dm6]	G	A	5.746e^-5	0.664	SYNONYMOUS_CODING clt UPSTREAM CG18870	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	1072797	2L_1072797_SNP [dm3] 2L_1072797_SNP [dm6]	T	A	5.778e^-5	0.664	INTRON S
3L	15760226	3L_15760226_SNP [dm3] 3L_15767126_SNP [dm6]	G	A	5.786e^-5	0.664	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	712226	3L_712226_SNP [dm3] 3L_712226_SNP [dm6]	C	A	5.791e^-5	0.664	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	11223911	3L_11223911_SNP [dm3] 3L_11230811_SNP [dm6]	C	T	5.809e^-5	0.664	DOWNSTREAM CR45405 & 1 other INTERGENIC
3L	7473829	3L_7473829_SNP [dm3] 3L_7480729_SNP [dm6]	C	G	5.954e^-5	0.667	INTERGENIC	TF binding site mE1_TFBS_inv
2R	6460371	2R_6460371_SNP [dm3] 2R_10572866_SNP [dm6]	C	A	6.025e^-5	0.667	INTRON psq
X	13623505	X_13623505_SNP [dm3] X_13729472_SNP [dm6]	T	C	6.091e^-5	0.667	SYNONYMOUS_CODING g	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11276693	3L_11276693_SNP [dm3] 3L_11283593_SNP [dm6]	A	G	6.142e^-5	0.667	INTERGENIC
2L	16445622	2L_16445622_SNP [dm3] 2L_16445622_SNP [dm6]	C	A	6.148e^-5	0.667	SYNONYMOUS_CODING Idgf1 INTRON CG5888
X	18636906	X_18636906_SNP [dm3] X_18742873_SNP [dm6]	C	T	6.247e^-5	0.667	INTERGENIC
2R	16294346	2R_16294346_SNP [dm3] 2R_20406841_SNP [dm6]	A	G	6.311e^-5	0.667	INTERGENIC	TF binding site mE1_TFBS_inv
3L	15483291	3L_15483291_SNP [dm3] 3L_15490191_SNP [dm6]	A	T	6.315e^-5	0.667	INTERGENIC
2L	9487588	2L_9487588_SNP [dm3] 2L_9487588_SNP [dm6]	A	G	6.324e^-5	0.667	INTERGENIC
2R	9147155	2R_9147155_SNP [dm3] 2R_13259650_SNP [dm6]	A	T	6.348e^-5	0.667	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2L	19898638	2L_19898638_SNP [dm3] 2L_19898638_SNP [dm6]	G	A	6.433e^-5	0.667	INTRON sick
2L	8447012	2L_8447012_SNP [dm3] 2L_8447012_SNP [dm6]	G	T	6.443e^-5	0.667	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_inv
X	13623400	X_13623400_SNP [dm3] X_13729367_SNP [dm6]	T	C	6.532e^-5	0.667	SYNONYMOUS_CODING g	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14835275	3L_14835275_INS [dm3] 3L_14842175_INS [dm6]	T	TTGCAA	6.584e^-5	0.667	INTRON CG17839
3L	6059888	3L_6059888_SNP [dm3] 3L_6066788_SNP [dm6]	T	C	6.675e^-5	0.667	SYNONYMOUS_CODING CG42269	TF binding site mE1_TFBS_chinmo
3R	12898293	3R_12898293_SNP [dm3] 3R_17072571_SNP [dm6]	C	T	6.721e^-5	0.667	UPSTREAM mRpS11 INTRON Ns1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11168356	3L_11168356_INS [dm3] 3L_11175256_INS [dm6]	G	TTATA	6.815e^-5	0.667	INTRON CG14142	TF binding site mE1_TFBS_cad
3R	10435018	3R_10435018_SNP [dm3] 3R_14609296_SNP [dm6]	T	G	6.824e^-5	0.667	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	2981701	3L_2981701_SNP [dm3] 3L_2981701_SNP [dm6]	A	G	6.853e^-5	0.667	SYNONYMOUS_CODING CG2107	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11892130	3L_11892130_SNP [dm3] 3L_11899030_SNP [dm6]	A	G	6.885e^-5	0.667	INTRON CG44837 & 1 other
3L	4159506	3L_4159506_SNP [dm3] 3L_4159506_SNP [dm6]	T	A	6.916e^-5	0.667	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	2705501	3R_2705501_SNP [dm3] 3R_6879779_SNP [dm6]	T	G	6.960e^-5	0.667	INTRON CR44931	regulatory region FlyBase REDfly_CRMs
X	14090881	X_14090881_SNP [dm3] X_14196848_SNP [dm6]	T	C	6.966e^-5	0.667	SYNONYMOUS_CODING yl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24485802	3R_24485802_SNP [dm3] 3R_28660080_SNP [dm6]	A	G	6.995e^-5	0.667	INTERGENIC
X	5120460	X_5120460_SNP [dm3] X_5226427_SNP [dm6]	A	G	6.995e^-5	0.667	INTRON CG15465 & 1 other
2R	4950454	2R_4950454_SNP [dm3] 2R_9062949_SNP [dm6]	G	A	7.029e^-5	0.667	INTRON ana	regulatory region REDfly_CRMs
3L	16202254	3L_16202254_SNP [dm3] 3L_16209154_SNP [dm6]	C	T	7.074e^-5	0.667	INTERGENIC	TF binding site mE1_TFBS_cad
3R	2868311	3R_2868311_INS [dm3] 3R_7042589_INS [dm6]	C	CGGA	7.131e^-5	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	2026836	3R_2026836_SNP [dm3] 3R_6201114_SNP [dm6]	A	T	7.136e^-5	0.667	INTRON Osi24	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10765513	X_10765513_SNP [dm3] X_10871480_SNP [dm6]	A	T	7.165e^-5	0.667	DOWNSTREAM CG2157 & 1 other INTRON CG1637	TF binding site mE1_TFBS_sens
3L	11168354	3L_11168354_SNP [dm3] 3L_11175254_SNP [dm6]	G	A	7.201e^-5	0.667	INTRON CG14142	TF binding site mE1_TFBS_cad
X	9423724	X_9423724_SNP [dm3] X_9529691_SNP [dm6]	C	A	7.228e^-5	0.667	INTRON CG32700
2L	378373	2L_378373_SNP [dm3] 2L_378373_SNP [dm6]	A	T	7.239e^-5	0.667	UTR_5_PRIME al	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2R	15903063	2R_15903063_SNP [dm3] 2R_20015558_SNP [dm6]	A	C	7.240e^-5	0.667	DOWNSTREAM CR44629 & 1 other INTERGENIC
2R	16921529	2R_16921529_SNP [dm3] 2R_21034024_SNP [dm6]	G	A	7.278e^-5	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	14489486	3L_14489486_SNP [dm3] 3L_14496386_SNP [dm6]	A	C	7.318e^-5	0.667	INTRON bbg	TF binding site mE1_TFBS_cad
3L	14489495	3L_14489495_SNP [dm3] 3L_14496395_SNP [dm6]	G	A	7.318e^-5	0.667	INTRON bbg	TF binding site mE1_TFBS_cad
3R	12566228	3R_12566228_SNP [dm3] 3R_16740506_SNP [dm6]	G	A	7.415e^-5	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3R	6271359	3R_6271359_SNP [dm3] 3R_10445637_SNP [dm6]	T	C	7.430e^-5	0.667	INTERGENIC
X	5251231	X_5251231_SNP [dm3] X_5357198_SNP [dm6]	G	A	7.438e^-5	0.667	INTRON SK
2L	1072752	2L_1072752_SNP [dm3] 2L_1072752_SNP [dm6]	G	T	7.487e^-5	0.667	INTRON S
3R	6708029	3R_6708029_SNP [dm3] 3R_10882307_SNP [dm6]	G	A	7.520e^-5	0.667	UPSTREAM Tpc1 DOWNSTREAM CG14696 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	606460	2L_606460_SNP [dm3] 2L_606460_SNP [dm6]	T	C	7.538e^-5	0.667	DOWNSTREAM CR43648 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16202299	3L_16202299_SNP [dm3] 3L_16209199_SNP [dm6]	C	T	7.583e^-5	0.667	INTERGENIC	TF binding site mE1_TFBS_cad
X	11756868	X_11756868_SNP [dm3] X_11862835_SNP [dm6]	G	T	7.587e^-5	0.667	SYNONYMOUS_CODING ATP7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2645081	3L_2645081_SNP [dm3] 3L_2645081_SNP [dm6]	A	G	7.609e^-5	0.667	UPSTREAM CG1143 INTERGENIC
3L	4011471	3L_4011471_SNP [dm3] 3L_4011471_SNP [dm6]	A	C	7.623e^-5	0.667	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17791346	2L_17791346_SNP [dm3] 2L_17791346_SNP [dm6]	T	C	7.626e^-5	0.667	INTRON CadN2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17792863	2L_17792863_SNP [dm3] 2L_17792863_SNP [dm6]	C	A	7.626e^-5	0.667	INTRON CadN2 EXON CR43419	TF binding site mE1_TFBS_cad
3L	14489439	3L_14489439_SNP [dm3] 3L_14496339_SNP [dm6]	A	G	7.652e^-5	0.667	INTRON bbg	TF binding site mE1_TFBS_cad
X	17952247	X_17952247_SNP [dm3] X_18058214_SNP [dm6]	A	C	7.675e^-5	0.667	INTRON Sh
2L	12213802	2L_12213802_SNP [dm3] 2L_12213802_SNP [dm6]	T	C	7.734e^-5	0.667	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12116819	2R_12116819_SNP [dm3] 2R_16229314_SNP [dm6]	A	G	7.742e^-5	0.667	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13884756	2L_13884756_SNP [dm3] 2L_13884756_SNP [dm6]	A	T	7.751e^-5	0.667	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	20080617	3L_20080617_SNP [dm3] 3L_20087517_SNP [dm6]	A	C	7.829e^-5	0.668	INTRON sNPF-R
2L	3189076	2L_3189076_DEL [dm3] 2L_3189076_DEL [dm6]	TC	T	7.855e^-5	0.668	INTRON CG34393
3L	15483252	3L_15483252_SNP [dm3] 3L_15490152_SNP [dm6]	G	T	7.869e^-5	0.668	INTERGENIC
X	10238028	X_10238028_SNP [dm3] X_10343995_SNP [dm6]	T	G	7.917e^-5	0.669	SYNONYMOUS_CODING CG43740	TF binding site mE1_TFBS_HSA
2R	8366265	2R_8366265_SNP [dm3] 2R_12478760_SNP [dm6]	A	C	8.018e^-5	0.672	INTRON Dh44-R2
3L	15760867	3L_15760867_SNP [dm3] 3L_15767767_SNP [dm6]	G	T	8.032e^-5	0.672	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5661124	X_5661124_SNP [dm3] X_5767091_SNP [dm6]	G	A	8.209e^-5	0.676	SYNONYMOUS_CODING CG3097 INTRON CG42699	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	373751	2L_373751_SNP [dm3] 2L_373751_SNP [dm6]	G	A	8.275e^-5	0.676	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14561392	3L_14561392_SNP [dm3] 3L_14568292_SNP [dm6]	T	C	8.288e^-5	0.676	DOWNSTREAM CG42758 INTERGENIC
X	5646808	X_5646808_SNP [dm3] X_5752775_SNP [dm6]	C	G	8.350e^-5	0.676	DOWNSTREAM CG4078 & 1 other INTRON CG15772	TF binding site mE1_TFBS_cad
2L	19841437	2L_19841437_SNP [dm3] 2L_19841437_SNP [dm6]	G	A	8.422e^-5	0.676	INTRON sick
3L	712337	3L_712337_SNP [dm3] 3L_712337_SNP [dm6]	G	T	8.484e^-5	0.676	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	17935653	X_17935653_SNP [dm3] X_18041620_SNP [dm6]	G	T	8.546e^-5	0.676	INTRON Sh
2L	13875778	2L_13875778_SNP [dm3] 2L_13875778_SNP [dm6]	G	T	8.595e^-5	0.676	INTRON CenG1A
X	10543785	X_10543785_SNP [dm3] X_10649752_SNP [dm6]	T	C	8.723e^-5	0.676	INTRON X11Lbeta
X	20025824	X_20025824_INS [dm3] X_20131791_INS [dm6]	A	ATGTA	8.724e^-5	0.676	UPSTREAM CG42582 INTERGENIC
3L	2645611	3L_2645611_SNP [dm3] 3L_2645611_SNP [dm6]	C	A	8.749e^-5	0.676	INTRON CG1143	TF binding site mE1_TFBS_cad
3L	712374	3L_712374_SNP [dm3] 3L_712374_SNP [dm6]	G	C	8.760e^-5	0.676	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	25894705	3R_25894705_SNP [dm3] 3R_30068983_SNP [dm6]	C	G	8.793e^-5	0.676	INTRON sima
3R	4342921	3R_4342921_SNP [dm3] 3R_8517199_SNP [dm6]	C	T	8.794e^-5	0.676	UPSTREAM CG11737 INTERGENIC
2L	19822550	2L_19822550_SNP [dm3] 2L_19822550_SNP [dm6]	A	C	8.871e^-5	0.676	INTRON sick
X	17951830	X_17951830_SNP [dm3] X_18057797_SNP [dm6]	A	C	8.878e^-5	0.676	INTRON Sh
3L	3966618	3L_3966618_DEL [dm3] 3L_3966618_DEL [dm6]	CCGCTGTCC	C	8.880e^-5	0.676	INTERGENIC
X	15985305	X_15985305_SNP [dm3] X_16091272_SNP [dm6]	C	G	8.888e^-5	0.676	UTR_5_PRIME Tob	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	3324729	X_3324729_SNP [dm3] X_3430696_SNP [dm6]	C	T	8.920e^-5	0.676	INTRON CR44999 & 1 other
3L	13924066	3L_13924066_SNP [dm3] 3L_13930966_SNP [dm6]	G	A	8.969e^-5	0.676	NON_SYNONYMOUS_CODING Gl	TF binding site mE1_TFBS_cad
2R	9147036	2R_9147036_SNP [dm3] 2R_13259531_SNP [dm6]	A	T	9.042e^-5	0.676	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3L	16216199	3L_16216199_SNP [dm3] 3L_16223099_SNP [dm6]	C	T	9.070e^-5	0.676	DOWNSTREAM tRNA:CR32153 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
X	2926031	X_2926031_SNP [dm3] X_3031998_SNP [dm6]	C	A	9.079e^-5	0.676	INTRON kirre
3L	1568524	3L_1568524_SNP [dm3] 3L_1568524_SNP [dm6]	A	C	9.084e^-5	0.676	UTR_5_PRIME CG7879 UPSTREAM CG12004 DOWNSTREAM CG12003	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	11052135	2R_11052135_SNP [dm3] 2R_15164630_SNP [dm6]	A	T	9.116e^-5	0.676	UTR_5_PRIME igl UPSTREAM igl INTRON igl
3L	12155898	3L_12155898_SNP [dm3] 3L_12162798_SNP [dm6]	T	C	9.182e^-5	0.676	INTRON CG9760
2R	18418701	2R_18418701_SNP [dm3] 2R_22531196_SNP [dm6]	A	C	9.240e^-5	0.676	INTRON px
2R	18418702	2R_18418702_SNP [dm3] 2R_22531197_SNP [dm6]	C	A	9.240e^-5	0.676	INTRON px
X	10765534	X_10765534_SNP [dm3] X_10871501_SNP [dm6]	T	G	9.296e^-5	0.676	DOWNSTREAM CG2157 & 1 other INTRON CG1637	TF binding site mE1_TFBS_sens
3L	2344403	3L_2344403_SNP [dm3] 3L_2344403_SNP [dm6]	A	T	9.304e^-5	0.676	UTR_3_PRIME MsR1
2L	13875541	2L_13875541_SNP [dm3] 2L_13875541_SNP [dm6]	C	G	9.329e^-5	0.676	INTRON CenG1A
3R	10435009	3R_10435009_SNP [dm3] 3R_14609287_SNP [dm6]	C	A	9.364e^-5	0.676	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	17503877	X_17503877_SNP [dm3] X_17609844_SNP [dm6]	G	T	9.371e^-5	0.676	INTERGENIC
3L	7461504	3L_7461504_SNP [dm3] 3L_7468404_SNP [dm6]	A	C	9.378e^-5	0.676	UTR_3_PRIME CG42660 & 2 others
2L	8447066	2L_8447066_SNP [dm3] 2L_8447066_SNP [dm6]	C	G	9.403e^-5	0.676	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_inv
3R	9959340	3R_9959340_SNP [dm3] 3R_14133618_SNP [dm6]	C	T	9.464e^-5	0.676	INTERGENIC
2R	15903314	2R_15903314_SNP [dm3] 2R_20015809_SNP [dm6]	A	C	9.480e^-5	0.676	DOWNSTREAM CR44630 INTERGENIC
2L	638044	2L_638044_SNP [dm3] 2L_638044_SNP [dm6]	A	G	9.504e^-5	0.676	INTERGENIC
3R	12895575	3R_12895575_DEL [dm3] 3R_17069853_DEL [dm6]	AA	A	9.592e^-5	0.676	UTR_3_PRIME Dad DOWNSTREAM Ns1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	7200910	3L_7200910_SNP [dm3] 3L_7207810_SNP [dm6]	A	T	9.599e^-5	0.676	INTERGENIC
2L	19826798	2L_19826798_SNP [dm3] 2L_19826798_SNP [dm6]	G	C	9.633e^-5	0.676	UTR_5_PRIME sick UPSTREAM sick INTRON sick
3L	11922753	3L_11922753_SNP [dm3] 3L_11929653_SNP [dm6]	C	T	9.654e^-5	0.676	INTRON CG44837 & 1 other
X	17946678	X_17946678_SNP [dm3] X_18052645_SNP [dm6]	G	T	9.654e^-5	0.676	INTRON Sh	TF binding site BDTNP1_TFBS_dl
3L	2645491	3L_2645491_SNP [dm3] 3L_2645491_SNP [dm6]	A	T	9.734e^-5	0.676	INTRON CG1143
3R	2734015	3R_2734015_SNP [dm3] 3R_6908293_SNP [dm6]	A	G	9.739e^-5	0.676	UTR_3_PRIME Antp INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run
3L	14835265	3L_14835265_SNP [dm3] 3L_14842165_SNP [dm6]	T	C	9.800e^-5	0.676	INTRON CG17839
3L	16432980	3L_16432980_SNP [dm3] 3L_16439880_SNP [dm6]	A	T	9.801e^-5	0.676	INTRON CG33158 & 1 other
3R	2867868	3R_2867868_SNP [dm3] 3R_7042146_SNP [dm6]	G	A	9.828e^-5	0.676	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12497505	3R_12497505_SNP [dm3] 3R_16671783_SNP [dm6]	C	T	9.867e^-5	0.676	INTRON Ubx
2R	16289150	2R_16289150_SNP [dm3] 2R_20401645_SNP [dm6]	G	A	9.883e^-5	0.676	INTERGENIC
3L	6060410	3L_6060410_SNP [dm3] 3L_6067310_SNP [dm6]	G	A	9.973e^-5	0.68	INTRON CG42269
2R	4953988	2R_4953988_SNP [dm3] 2R_9066483_SNP [dm6]	T	C	1.005e^-4	0.681	INTRON ana	regulatory region REDfly_CRMs
3L	18066871	3L_18066871_SNP [dm3] 3L_18073771_SNP [dm6]	G	T	1.006e^-4	0.681	NON_SYNONYMOUS_CODING CG44004 DOWNSTREAM CR45391
3L	20080577	3L_20080577_SNP [dm3] 3L_20087477_SNP [dm6]	T	A	1.015e^-4	0.681	INTRON sNPF-R
2R	15895215	2R_15895215_SNP [dm3] 2R_20007710_SNP [dm6]	T	C	1.017e^-4	0.681	DOWNSTREAM CR44628 INTERGENIC	TF binding site mE1_TFBS_Trl
X	15671878	X_15671878_SNP [dm3] X_15777845_SNP [dm6]	G	A	1.018e^-4	0.681	NON_SYNONYMOUS_CODING CG43672
2R	9147232	2R_9147232_SNP [dm3] 2R_13259727_SNP [dm6]	C	A	1.022e^-4	0.681	UPSTREAM CG42319 INTERGENIC
3L	712319	3L_712319_INS [dm3] 3L_712319_INS [dm6]	C	CA	1.028e^-4	0.681	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712342	3L_712342_SNP [dm3] 3L_712342_SNP [dm6]	A	T	1.028e^-4	0.681	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	9053262	2L_9053262_SNP [dm3] 2L_9053262_SNP [dm6]	T	A	1.037e^-4	0.685	INTRON CG31708
2R	156485	2R_156485_SNP [dm3] 2R_4268980_SNP [dm6]	G	T	1.041e^-4	0.685	INTERGENIC
3L	6710275	3L_6710275_SNP [dm3] 3L_6717175_SNP [dm6]	G	A	1.050e^-4	0.687	INTRON ple	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	6643082	X_6643082_INS [dm3] X_6749049_INS [dm6]	A	AACAGAGA	1.053e^-4	0.687	INTRON CG14439
X	4938420	X_4938420_SNP [dm3] X_5044387_SNP [dm6]	T	A	1.058e^-4	0.687	INTRON CR44833	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	1.065e^-4	0.687	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17790757	2L_17790757_SNP [dm3] 2L_17790757_SNP [dm6]	G	A	1.071e^-4	0.687	INTRON CadN2
2R	15903566	2R_15903566_SNP [dm3] 2R_20016061_SNP [dm6]	C	G	1.072e^-4	0.687	DOWNSTREAM CR44630 INTERGENIC
X	11409369	X_11409369_SNP [dm3] X_11515336_SNP [dm6]	T	G	1.074e^-4	0.687	INTRON Drak	TF binding site mE1_TFBS_Kr
3R	13600041	3R_13600041_SNP [dm3] 3R_17774319_SNP [dm6]	C	T	1.084e^-4	0.687	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3L	11276731	3L_11276731_SNP [dm3] 3L_11283631_SNP [dm6]	A	G	1.085e^-4	0.687	INTERGENIC
2L	6704694	2L_6704694_SNP [dm3] 2L_6704694_SNP [dm6]	A	C	1.090e^-4	0.687	INTRON Tsp	TF binding site mE1_TFBS_hkb
3L	7209302	3L_7209302_INS [dm3] 3L_7216202_INS [dm6]	T	TGCTTTT	1.090e^-4	0.687	INTERGENIC
X	2554105	X_2554105_SNP [dm3] X_2660072_SNP [dm6]	T	C	1.092e^-4	0.687	SYNONYMOUS_CODING sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17289532	2L_17289532_SNP [dm3] 2L_17289532_SNP [dm6]	A	C	1.094e^-4	0.687	INTERGENIC
3L	15321347	3L_15321347_SNP [dm3] 3L_15328247_SNP [dm6]	C	A	1.096e^-4	0.687	INTERGENIC
3L	15321323	3L_15321323_SNP [dm3] 3L_15328223_SNP [dm6]	A	T	1.102e^-4	0.689	INTERGENIC
2L	17333598	2L_17333598_SNP [dm3] 2L_17333598_SNP [dm6]	G	A	1.110e^-4	0.689	INTERGENIC
3L	11892131	3L_11892131_SNP [dm3] 3L_11899031_SNP [dm6]	C	T	1.112e^-4	0.689	INTRON CG44837 & 1 other
3L	14561228	3L_14561228_SNP [dm3] 3L_14568128_SNP [dm6]	T	G	1.114e^-4	0.689	UTR_3_PRIME CG42758
3R	26189320	3R_26189320_SNP [dm3] 3R_30363598_SNP [dm6]	C	T	1.128e^-4	0.693	UTR_3_PRIME hdc
2L	19522016	2L_19522016_SNP [dm3] 2L_19522016_SNP [dm6]	G	T	1.128e^-4	0.693	SYNONYMOUS_CODING CG10132	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18454882	X_18454882_SNP [dm3] X_18560849_SNP [dm6]	G	A	1.139e^-4	0.696	INTRON Bx
3L	9555349	3L_9555349_SNP [dm3] 3L_9562249_SNP [dm6]	A	G	1.140e^-4	0.696	INTRON CG42673
3L	17633388	3L_17633388_SNP [dm3] 3L_17640288_SNP [dm6]	A	G	1.149e^-4	0.696	INTRON Pep	TF binding site mE1_TFBS_cad
3L	8207850	3L_8207850_SNP [dm3] 3L_8214750_SNP [dm6]	T	C	1.149e^-4	0.696	UPSTREAM CG8012 INTERGENIC
2L	15959956	2L_15959956_SNP [dm3] 2L_15959956_SNP [dm6]	G	C	1.160e^-4	0.696	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
2R	14331781	2R_14331781_SNP [dm3] 2R_18444276_SNP [dm6]	G	T	1.164e^-4	0.696	INTRON slim
3L	14489497	3L_14489497_SNP [dm3] 3L_14496397_SNP [dm6]	T	A	1.165e^-4	0.696	INTRON bbg	TF binding site mE1_TFBS_cad
2R	4952874	2R_4952874_SNP [dm3] 2R_9065369_SNP [dm6]	G	A	1.183e^-4	0.696	INTRON ana	regulatory region REDfly_CRMs
X	5480679	X_5480679_SNP [dm3] X_5586646_SNP [dm6]	T	A	1.184e^-4	0.696	INTERGENIC
X	5489798	X_5489798_SNP [dm3] X_5595765_SNP [dm6]	A	T	1.192e^-4	0.696	INTRON Vsx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
X	9614450	X_9614450_SNP [dm3] X_9720417_SNP [dm6]	T	C	1.193e^-4	0.696	INTERGENIC
3L	18013428	3L_18013428_DEL [dm3] 3L_18020328_DEL [dm6]	CC	C	1.196e^-4	0.696	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
2L	9438552	2L_9438552_SNP [dm3] 2L_9438552_SNP [dm6]	C	T	1.198e^-4	0.696	INTRON numb	TF binding site BDTNP1_TFBS_dl
2L	9438574	2L_9438574_SNP [dm3] 2L_9438574_SNP [dm6]	A	T	1.202e^-4	0.696	INTRON numb	TF binding site BDTNP1_TFBS_dl
2L	2081474	2L_2081474_SNP [dm3] 2L_2081474_SNP [dm6]	A	G	1.204e^-4	0.696	UPSTREAM CR44808 DOWNSTREAM CG12674 INTRON dpr3
2R	17894354	2R_17894354_SNP [dm3] 2R_22006849_SNP [dm6]	A	G	1.204e^-4	0.696	INTRON CG34370
2L	19821796	2L_19821796_SNP [dm3] 2L_19821796_SNP [dm6]	C	A	1.207e^-4	0.696	INTRON sick
X	18463732	X_18463732_SNP [dm3] X_18569699_SNP [dm6]	A	G	1.210e^-4	0.696	INTRON Bx	TF binding site BDTNP1_TFBS_da
2R	12425650	2R_12425650_DEL [dm3] 2R_16538145_DEL [dm6]	TATGCACTTATTGCATGAAT...	T	1.211e^-4	0.696	INTERGENIC
X	10443026	X_10443026_SNP [dm3] X_10548993_SNP [dm6]	C	T	1.220e^-4	0.696	INTRON spri
2R	11976067	2R_11976067_SNP [dm3] 2R_16088562_SNP [dm6]	T	A	1.222e^-4	0.696	INTRON Dg
3L	1564689	3L_1564689_SNP [dm3] 3L_1564689_SNP [dm6]	T	C	1.222e^-4	0.696	UPSTREAM CG12003 INTRON CG7879
3R	17684793	3R_17684793_SNP [dm3] 3R_21859071_SNP [dm6]	A	C	1.225e^-4	0.696	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11270029	3L_11270029_SNP [dm3] 3L_11276929_SNP [dm6]	A	C	1.229e^-4	0.696	INTERGENIC
2L	14702724	2L_14702724_SNP [dm3] 2L_14702724_SNP [dm6]	C	G	1.231e^-4	0.696	INTERGENIC
2L	3245328	2L_3245328_SNP [dm3] 2L_3245328_SNP [dm6]	C	T	1.232e^-4	0.696	INTERGENIC
3R	24353994	3R_24353994_SNP [dm3] 3R_28528272_SNP [dm6]	G	A	1.237e^-4	0.696	NON_SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7156753	3L_7156753_SNP [dm3] 3L_7163653_SNP [dm6]	G	A	1.240e^-4	0.696	INTRON Dscam2
3L	7156769	3L_7156769_SNP [dm3] 3L_7163669_SNP [dm6]	G	A	1.240e^-4	0.696	INTRON Dscam2
X	16146285	X_16146285_SNP [dm3] X_16252252_SNP [dm6]	G	T	1.252e^-4	0.698	INTERGENIC
3L	6059894	3L_6059894_SNP [dm3] 3L_6066794_SNP [dm6]	G	T	1.252e^-4	0.698	SYNONYMOUS_CODING CG42269	TF binding site mE1_TFBS_chinmo
3L	2645886	3L_2645886_SNP [dm3] 3L_2645886_SNP [dm6]	C	A	1.254e^-4	0.698	NON_SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13600157	3R_13600157_SNP [dm3] 3R_17774435_SNP [dm6]	T	G	1.266e^-4	0.698	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3R	15069125	3R_15069125_SNP [dm3] 3R_19243403_SNP [dm6]	A	T	1.270e^-4	0.698	SYNONYMOUS_CODING unc79	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	21150049	X_21150049_SNP [dm3] X_21279022_SNP [dm6]	C	G	1.271e^-4	0.698	INTRON CG32521
3L	16202346	3L_16202346_SNP [dm3] 3L_16209246_SNP [dm6]	C	T	1.272e^-4	0.698	INTERGENIC	TF binding site mE1_TFBS_cad
2L	2081492	2L_2081492_SNP [dm3] 2L_2081492_SNP [dm6]	G	C	1.274e^-4	0.698	UPSTREAM CR44808 DOWNSTREAM CG12674 INTRON dpr3
2L	16445625	2L_16445625_SNP [dm3] 2L_16445625_SNP [dm6]	C	T	1.280e^-4	0.699	SYNONYMOUS_CODING Idgf1 INTRON CG5888
3L	4737892	3L_4737892_SNP [dm3] 3L_4737892_SNP [dm6]	T	C	1.282e^-4	0.699	INTRON RhoGEF64C
2R	9078145	2R_9078145_SNP [dm3] 2R_13190640_SNP [dm6]	C	T	1.291e^-4	0.702	UPSTREAM seq & 2 others INTRON Kdm4B	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	13506075	2R_13506075_SNP [dm3] 2R_17618570_SNP [dm6]	T	G	1.304e^-4	0.706	UPSTREAM CG44403 INTRON CG10936
2L	1072759	2L_1072759_SNP [dm3] 2L_1072759_SNP [dm6]	A	G	1.311e^-4	0.708	INTRON S
3R	10306370	3R_10306370_SNP [dm3] 3R_14480648_SNP [dm6]	A	G	1.316e^-4	0.708	UTR_5_PRIME cv-c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	15483209	3L_15483209_SNP [dm3] 3L_15490109_SNP [dm6]	A	G	1.318e^-4	0.708	INTERGENIC
3R	15767069	3R_15767069_SNP [dm3] 3R_19941347_SNP [dm6]	G	A	1.330e^-4	0.713	INTRON Hs6st
3L	18575735	3L_18575735_SNP [dm3] 3L_18582635_SNP [dm6]	C	A	1.339e^-4	0.713	UPSTREAM CR45435 INTERGENIC
3L	12023901	3L_12023901_SNP [dm3] 3L_12030801_SNP [dm6]	C	T	1.346e^-4	0.713	INTRON rols	TF binding site mE1_TFBS_cad
2R	18985584	2R_18985584_SNP [dm3] 2R_23098061_SNP [dm6]	T	C	1.348e^-4	0.713	INTERGENIC
X	7613485	X_7613485_SNP [dm3] X_7719452_SNP [dm6]	G	A	1.350e^-4	0.713	INTERGENIC
3R	25570656	3R_25570656_SNP [dm3] 3R_29744934_SNP [dm6]	G	A	1.351e^-4	0.713	SYNONYMOUS_CODING CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16388566	2R_16388566_SNP [dm3] 2R_20501061_SNP [dm6]	T	C	1.369e^-4	0.718	INTERGENIC	regulatory region REDfly_CRMs
3L	712322	3L_712322_SNP [dm3] 3L_712322_SNP [dm6]	A	G	1.370e^-4	0.718	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	1008948	3L_1008948_SNP [dm3] 3L_1008948_SNP [dm6]	T	A	1.371e^-4	0.718	INTRON trio
2L	17328469	2L_17328469_SNP [dm3] 2L_17328469_SNP [dm6]	A	T	1.377e^-4	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	9638379	X_9638379_SNP [dm3] X_9744346_SNP [dm6]	T	C	1.385e^-4	0.72	INTRON Sp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	11330776	X_11330776_DEL [dm3] X_11436743_DEL [dm6]	AA	A	1.389e^-4	0.72	INTRON Evi5
2L	16445557	2L_16445557_SNP [dm3] 2L_16445557_SNP [dm6]	C	T	1.396e^-4	0.72	SYNONYMOUS_CODING Idgf1 INTRON CG5888
X	7064106	X_7064106_SNP [dm3] X_7170073_SNP [dm6]	A	T	1.397e^-4	0.72	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3R	3469607	3R_3469607_SNP [dm3] 3R_7643885_SNP [dm6]	C	T	1.401e^-4	0.72	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4220852	2L_4220852_SNP [dm3] 2L_4220852_SNP [dm6]	T	C	1.401e^-4	0.72	INTRON ft	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2L	7207266	2L_7207266_SNP [dm3] 2L_7207266_SNP [dm6]	T	A	1.412e^-4	0.721	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784
3R	27146681	3R_27146681_SNP [dm3] 3R_31320959_SNP [dm6]	C	A	1.412e^-4	0.721	INTRON CG34347
X	4928467	X_4928467_SNP [dm3] X_5034434_SNP [dm6]	T	A	1.420e^-4	0.723	INTRON CR44833
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	1.422e^-4	0.723	EXON CR44950
3L	11946333	3L_11946333_SNP [dm3] 3L_11953233_SNP [dm6]	C	A	1.428e^-4	0.724	NON_SYNONYMOUS_CODING obst-G UPSTREAM CG7248
3L	11911451	3L_11911451_SNP [dm3] 3L_11918351_SNP [dm6]	T	A	1.433e^-4	0.724	INTRON CG44837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2R	14087396	2R_14087396_SNP [dm3] 2R_18199891_SNP [dm6]	T	C	1.447e^-4	0.727	INTERGENIC
2L	388595	2L_388595_SNP [dm3] 2L_388595_SNP [dm6]	G	T	1.448e^-4	0.727	INTERGENIC
3L	8518986	3L_8518986_SNP [dm3] 3L_8525886_SNP [dm6]	A	C	1.457e^-4	0.727	INTRON foi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	13924058	3L_13924058_SNP [dm3] 3L_13930958_SNP [dm6]	T	G	1.463e^-4	0.727	SYNONYMOUS_CODING Gl	TF binding site mE1_TFBS_cad
X	11756604	X_11756604_SNP [dm3] X_11862571_SNP [dm6]	T	C	1.468e^-4	0.727	SYNONYMOUS_CODING ATP7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22253533	3R_22253533_SNP [dm3] 3R_26427811_SNP [dm6]	C	A	1.469e^-4	0.727	UPSTREAM CR43434 INTRON CR31084
X	5661593	X_5661593_SNP [dm3] X_5767560_SNP [dm6]	C	T	1.489e^-4	0.727	SYNONYMOUS_CODING CG3097 INTRON CG42699	TF binding site mE1_TFBS_sens
2L	16445275	2L_16445275_SNP [dm3] 2L_16445275_SNP [dm6]	G	T	1.490e^-4	0.727	UPSTREAM Idgf1 INTRON CG5888
3L	11277473	3L_11277473_SNP [dm3] 3L_11284373_SNP [dm6]	G	A	1.497e^-4	0.727	UPSTREAM CR45404 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	2867864	3R_2867864_SNP [dm3] 3R_7042142_SNP [dm6]	A	C	1.501e^-4	0.727	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10345424	2R_10345424_SNP [dm3] 2R_14457919_SNP [dm6]	C	T	1.503e^-4	0.727	UPSTREAM Oaz INTRON Oaz	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	18192906	2R_18192906_SNP [dm3] 2R_22305401_SNP [dm6]	C	T	1.508e^-4	0.727	INTRON wdp
2L	17790175	2L_17790175_SNP [dm3] 2L_17790175_SNP [dm6]	G	A	1.511e^-4	0.727	INTRON CadN2
2R	12419165	2R_12419165_SNP [dm3] 2R_16531660_SNP [dm6]	G	A	1.511e^-4	0.727	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10969435	3L_10969435_SNP [dm3] 3L_10976335_SNP [dm6]	A	C	1.518e^-4	0.727	INTERGENIC	TF binding site mE1_TFBS_cad
3R	12898258	3R_12898258_SNP [dm3] 3R_17072536_SNP [dm6]	G	C	1.524e^-4	0.727	UPSTREAM mRpS11 INTRON Ns1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20231634	3R_20231634_SNP [dm3] 3R_24405912_SNP [dm6]	G	A	1.524e^-4	0.727	INTRON nAChRalpha1
3R	4313161	3R_4313161_SNP [dm3] 3R_8487439_SNP [dm6]	G	A	1.528e^-4	0.727	INTERGENIC
3L	712455	3L_712455_SNP [dm3] 3L_712455_SNP [dm6]	C	T	1.529e^-4	0.727	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	1100900	2L_1100900_SNP [dm3] 2L_1100900_SNP [dm6]	C	G	1.531e^-4	0.727	INTRON CG4629
3L	712335	3L_712335_SNP [dm3] 3L_712335_SNP [dm6]	T	A	1.531e^-4	0.727	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	8626783	X_8626783_SNP [dm3] X_8732750_SNP [dm6]	T	A	1.533e^-4	0.727	INTERGENIC
2R	18798100	2R_18798100_SNP [dm3] 2R_22910577_SNP [dm6]	G	T	1.534e^-4	0.727	SYNONYMOUS_CODING nahoda
3L	4736916	3L_4736916_SNP [dm3] 3L_4736916_SNP [dm6]	C	T	1.535e^-4	0.727	INTRON RhoGEF64C
X	7620883	X_7620883_SNP [dm3] X_7726850_SNP [dm6]	G	A	1.540e^-4	0.727	SYNONYMOUS_CODING NELF-B DOWNSTREAM Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5228937	X_5228937_INS [dm3] X_5334904_INS [dm6]	C	CTACACTCGCAAAAAAAAAA...	1.542e^-4	0.727	DOWNSTREAM CanB INTERGENIC
2R	11724908	2R_11724908_SNP [dm3] 2R_15837403_SNP [dm6]	C	T	1.547e^-4	0.727	INTRON tun	regulatory region REDfly_CRMs
3L	2325817	3L_2325817_SNP [dm3] 3L_2325817_SNP [dm6]	C	A	1.549e^-4	0.727	INTRON MsR1
3L	13487564	3L_13487564_SNP [dm3] 3L_13494464_SNP [dm6]	G	T	1.551e^-4	0.727	INTRON Tgi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	2022931	3R_2022931_SNP [dm3] 3R_6197209_SNP [dm6]	T	A	1.555e^-4	0.727	INTERGENIC
2R	15903310	2R_15903310_DEL [dm3] 2R_20015805_DEL [dm6]	TGA	T	1.563e^-4	0.729	DOWNSTREAM CR44630 INTERGENIC
3R	10827221	3R_10827221_SNP [dm3] 3R_15001499_SNP [dm6]	C	A	1.576e^-4	0.733	INTERGENIC
3R	6299585	3R_6299585_SNP [dm3] 3R_10473863_SNP [dm6]	G	T	1.587e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	11634641	2R_11634641_SNP [dm3] 2R_15747136_SNP [dm6]	A	T	1.587e^-4	0.733	INTRON CG30089	TF binding site mE1_TFBS_cad
2L	19480302	2L_19480302_SNP [dm3] 2L_19480302_SNP [dm6]	A	C	1.590e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1564489	3L_1564489_SNP [dm3] 3L_1564489_SNP [dm6]	A	G	1.594e^-4	0.733	UPSTREAM CG12003 INTRON CG7879
3L	18011350	3L_18011350_SNP [dm3] 3L_18018250_SNP [dm6]	T	C	1.595e^-4	0.733	INTRON Eip75B
3R	6719184	3R_6719184_SNP [dm3] 3R_10893462_SNP [dm6]	A	G	1.598e^-4	0.733	UTR_5_PRIME CG6621 INTRON Leash	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
X	5371794	X_5371794_SNP [dm3] X_5477761_SNP [dm6]	A	C	1.603e^-4	0.733	INTRON SPR
X	4093952	X_4093952_SNP [dm3] X_4199919_SNP [dm6]	A	T	1.617e^-4	0.738	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	10569471	X_10569471_SNP [dm3] X_10675438_SNP [dm6]	A	C	1.628e^-4	0.74	INTRON X11Lbeta
2R	16921659	2R_16921659_SNP [dm3] 2R_21034154_SNP [dm6]	G	T	1.634e^-4	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9147365	2R_9147365_SNP [dm3] 2R_13259860_SNP [dm6]	G	C	1.640e^-4	0.74	UPSTREAM CG42319 INTERGENIC
3R	27112061	3R_27112061_SNP [dm3] 3R_31286339_SNP [dm6]	A	C	1.646e^-4	0.74	INTERGENIC
3L	5884764	3L_5884764_SNP [dm3] 3L_5891664_SNP [dm6]	C	T	1.649e^-4	0.74	INTERGENIC
2R	11809811	2R_11809811_SNP [dm3] 2R_15922306_SNP [dm6]	T	C	1.656e^-4	0.74	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
2R	16394601	2R_16394601_SNP [dm3] 2R_20507096_SNP [dm6]	T	A	1.657e^-4	0.74	UPSTREAM CR44644 DOWNSTREAM CR44645 INTERGENIC
3L	18010759	3L_18010759_SNP [dm3] 3L_18017659_SNP [dm6]	A	G	1.659e^-4	0.74	INTRON Eip75B
3L	712343	3L_712343_SNP [dm3] 3L_712343_SNP [dm6]	A	C	1.660e^-4	0.74	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	15623928	3L_15623928_SNP [dm3] 3L_15630828_SNP [dm6]	A	C	1.662e^-4	0.74	INTRON comm3
2L	3431137	2L_3431137_SNP [dm3] 2L_3431137_SNP [dm6]	T	C	1.665e^-4	0.74	INTERGENIC
3L	15606962	3L_15606962_SNP [dm3] 3L_15613862_SNP [dm6]	G	T	1.679e^-4	0.741	SYNONYMOUS_CODING comm3
3L	11168316	3L_11168316_SNP [dm3] 3L_11175216_SNP [dm6]	G	C	1.681e^-4	0.741	INTRON CG14142
X	6094683	X_6094683_SNP [dm3] X_6200650_SNP [dm6]	T	C	1.682e^-4	0.741	SPLICE_SITE_REGION vanin-like UPSTREAM CG43090 INTRON vanin-like
3L	18066960	3L_18066960_SNP [dm3] 3L_18073860_SNP [dm6]	A	T	1.684e^-4	0.741	UTR_5_PRIME CG44004 DOWNSTREAM CR45391
2R	4502920	2R_4502920_SNP [dm3] 2R_8615415_SNP [dm6]	G	T	1.695e^-4	0.743	UTR_5_PRIME Cirl UPSTREAM Cirl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	712323	3L_712323_SNP [dm3] 3L_712323_SNP [dm6]	T	A	1.696e^-4	0.743	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	10998512	2R_10998512_SNP [dm3] 2R_15111007_SNP [dm6]	G	T	1.700e^-4	0.743	INTERGENIC
2L	2360614	2L_2360614_SNP [dm3] 2L_2360614_SNP [dm6]	A	G	1.706e^-4	0.744	INTRON Rab5
3L	9733102	3L_9733102_SNP [dm3] 3L_9740002_SNP [dm6]	T	G	1.726e^-4	0.745	UPSTREAM CG42268 INTRON CG42268
3L	5369541	3L_5369541_SNP [dm3] 3L_5376441_SNP [dm6]	C	T	1.729e^-4	0.745	INTERGENIC
X	5742546	X_5742546_SNP [dm3] X_5848513_SNP [dm6]	T	C	1.732e^-4	0.745	INTERGENIC
2R	16340634	2R_16340634_SNP [dm3] 2R_20453129_SNP [dm6]	A	G	1.736e^-4	0.745	INTRON CG12484
3L	12162991	3L_12162991_SNP [dm3] 3L_12169891_SNP [dm6]	C	G	1.752e^-4	0.745	INTRON Rh7
2R	10346210	2R_10346210_SNP [dm3] 2R_14458705_SNP [dm6]	G	T	1.753e^-4	0.745	UTR_5_PRIME Oaz INTRON Oaz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16202334	3L_16202334_SNP [dm3] 3L_16209234_SNP [dm6]	A	T	1.756e^-4	0.745	INTERGENIC	TF binding site mE1_TFBS_cad
3R	26134311	3R_26134311_SNP [dm3] 3R_30308589_SNP [dm6]	A	T	1.763e^-4	0.745	INTRON hdc
2L	637986	2L_637986_SNP [dm3] 2L_637986_SNP [dm6]	A	G	1.763e^-4	0.745	INTERGENIC
2L	1072838	2L_1072838_SNP [dm3] 2L_1072838_SNP [dm6]	T	G	1.766e^-4	0.745	INTRON S
3R	3965610	3R_3965610_SNP [dm3] 3R_8139888_SNP [dm6]	T	C	1.769e^-4	0.745	UPSTREAM tRNA:N5:84F DOWNSTREAM tRNA:R2:84Fe & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	17952286	X_17952286_SNP [dm3] X_18058253_SNP [dm6]	C	T	1.774e^-4	0.745	INTRON Sh
2L	8448607	2L_8448607_SNP [dm3] 2L_8448607_SNP [dm6]	A	C	1.776e^-4	0.745	SYNONYMOUS_CODING U26
3L	9734760	3L_9734760_MNP [dm3] 3L_9741660_MNP [dm6]	TCG	ATA	1.778e^-4	0.745	INTRON CG42268 & 1 other
3L	735320	3L_735320_SNP [dm3] 3L_735320_SNP [dm6]	G	A	1.782e^-4	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7352986	3L_7352986_SNP [dm3] 3L_7359886_SNP [dm6]	A	G	1.786e^-4	0.745	UPSTREAM Sec63 INTRON pst
2L	8741274	2L_8741274_SNP [dm3] 2L_8741274_SNP [dm6]	T	A	1.788e^-4	0.745	UPSTREAM raw INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_kn
2R	15459606	2R_15459606_SNP [dm3] 2R_19572101_SNP [dm6]	T	G	1.789e^-4	0.745	INTRON sm
2L	14873016	2L_14873016_SNP [dm3] 2L_14873016_SNP [dm6]	C	T	1.801e^-4	0.745	UPSTREAM CG4480 INTERGENIC
3R	12898269	3R_12898269_SNP [dm3] 3R_17072547_SNP [dm6]	T	A	1.809e^-4	0.745	UPSTREAM mRpS11 INTRON Ns1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4147030	2L_4147030_SNP [dm3] 2L_4147030_SNP [dm6]	C	T	1.812e^-4	0.745	INTERGENIC
3L	15483419	3L_15483419_SNP [dm3] 3L_15490319_SNP [dm6]	T	A	1.814e^-4	0.745	INTERGENIC
3L	9677901	3L_9677901_SNP [dm3] 3L_9684801_SNP [dm6]	C	T	1.820e^-4	0.745	SYNONYMOUS_CODING CG6767 UPSTREAM CG16719	TF binding site mE1_TFBS_cad
3R	18780272	3R_18780272_SNP [dm3] 3R_22954550_SNP [dm6]	A	G	1.821e^-4	0.745	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	11322549	3R_11322549_SNP [dm3] 3R_15496827_SNP [dm6]	T	C	1.822e^-4	0.745	INTERGENIC
3L	11621381	3L_11621381_SNP [dm3] 3L_11628281_SNP [dm6]	G	T	1.824e^-4	0.745	DOWNSTREAM PCID2 INTRON CG18815	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	4019339	2L_4019339_SNP [dm3] 2L_4019339_SNP [dm6]	C	G	1.834e^-4	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	1795589	3R_1795589_SNP [dm3] 3R_5969867_SNP [dm6]	G	A	1.836e^-4	0.745	UPSTREAM CR44926 INTERGENIC
3L	2116038	3L_2116038_SNP [dm3] 3L_2116038_SNP [dm6]	T	C	1.836e^-4	0.745	UPSTREAM sls INTERGENIC	TF binding site mE1_TFBS_Trl
3R	27127740	3R_27127740_SNP [dm3] 3R_31302018_SNP [dm6]	G	C	1.842e^-4	0.745	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	5980533	2R_5980533_DEL [dm3] 2R_10093028_DEL [dm6]	CACAAATTAATGGC...	C	1.842e^-4	0.745	INTRON CG2269
2L	735370	2L_735370_SNP [dm3] 2L_735370_SNP [dm6]	C	G	1.844e^-4	0.745	INTERGENIC
2L	21921535	2L_21921535_SNP [dm3] 2L_21921535_SNP [dm6]	T	C	1.844e^-4	0.745	INTERGENIC
3L	5568386	3L_5568386_SNP [dm3] 3L_5575286_SNP [dm6]	G	C	1.851e^-4	0.745	UPSTREAM Msr-110 INTRON Msr-110
3L	11270074	3L_11270074_SNP [dm3] 3L_11276974_SNP [dm6]	A	G	1.862e^-4	0.745	INTERGENIC
3L	11838534	3L_11838534_SNP [dm3] 3L_11845434_SNP [dm6]	G	C	1.862e^-4	0.745	INTERGENIC
2R	7092677	2R_7092677_SNP [dm3] 2R_11205172_SNP [dm6]	G	T	1.869e^-4	0.745	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3305418	3R_3305418_SNP [dm3] 3R_7479696_SNP [dm6]	G	A	1.871e^-4	0.745	INTERGENIC
3L	14561384	3L_14561384_SNP [dm3] 3L_14568284_SNP [dm6]	G	A	1.876e^-4	0.745	DOWNSTREAM CG42758 INTERGENIC
X	17935662	X_17935662_SNP [dm3] X_18041629_SNP [dm6]	A	T	1.886e^-4	0.745	INTRON Sh
3L	19076097	3L_19076097_SNP [dm3] 3L_19082997_SNP [dm6]	A	G	1.889e^-4	0.745	INTRON Mkp3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	17333597	2L_17333597_SNP [dm3] 2L_17333597_SNP [dm6]	A	G	1.892e^-4	0.745	INTERGENIC
3L	9733121	3L_9733121_SNP [dm3] 3L_9740021_SNP [dm6]	C	T	1.898e^-4	0.745	UPSTREAM CG42268 INTRON CG42268
3L	16725723	3L_16725723_SNP [dm3] 3L_16732623_SNP [dm6]	C	G	1.903e^-4	0.745	UPSTREAM CG9701 INTERGENIC
2R	15173056	2R_15173056_DEL [dm3] 2R_19285551_DEL [dm6]	AGTCTAACAAAATTAGTA...	A	1.904e^-4	0.745	UTR_3_PRIME CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
X	5115825	X_5115825_SNP [dm3] X_5221792_SNP [dm6]	A	G	1.907e^-4	0.745	INTRON CG15465 & 1 other
3R	4340520	3R_4340520_SNP [dm3] 3R_8514798_SNP [dm6]	T	A	1.911e^-4	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	4841343	3L_4841343_SNP [dm3] 3L_4841343_SNP [dm6]	A	C	1.915e^-4	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	16202307	3L_16202307_SNP [dm3] 3L_16209207_SNP [dm6]	T	C	1.916e^-4	0.745	INTERGENIC	TF binding site mE1_TFBS_cad
X	17901918	X_17901918_MNP [dm3] X_18007885_MNP [dm6]	GTT	TAG	1.917e^-4	0.745	UPSTREAM CG12672 INTRON Sh
2R	3241549	2R_3241549_SNP [dm3] 2R_7354044_SNP [dm6]	G	A	1.918e^-4	0.745	INTRON Dscam1
2L	8706288	2L_8706288_SNP [dm3] 2L_8706288_SNP [dm6]	T	C	1.922e^-4	0.745	SYNONYMOUS_CODING CG9314 DOWNSTREAM CR44992 INTRON Hnf4	TF binding site mE1_TFBS_sens
2R	12267152	2R_12267152_SNP [dm3] 2R_16379647_SNP [dm6]	T	A	1.923e^-4	0.745	UPSTREAM CG43187 EXON CR45316 & 1 other
3R	2709050	3R_2709050_SNP [dm3] 3R_6883328_SNP [dm6]	A	T	1.931e^-4	0.745	INTRON CR44931	regulatory region REDfly_CRMs
3L	11617856	3L_11617856_SNP [dm3] 3L_11624756_SNP [dm6]	T	G	1.932e^-4	0.745	SYNONYMOUS_CODING CG6083 UPSTREAM CG6084
2L	12148371	2L_12148371_SNP [dm3] 2L_12148371_SNP [dm6]	T	A	1.934e^-4	0.745	INTRON CG31760
3L	19449444	3L_19449444_SNP [dm3] 3L_19456344_SNP [dm6]	C	G	1.937e^-4	0.745	DOWNSTREAM CR45434 INTERGENIC
2R	16517576	2R_16517576_SNP [dm3] 2R_20630071_SNP [dm6]	T	C	1.943e^-4	0.745	SYNONYMOUS_CODING Rcd6	TF binding site mE1_TFBS_chinmo
2L	8448217	2L_8448217_SNP [dm3] 2L_8448217_SNP [dm6]	T	C	1.945e^-4	0.745	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA
3R	6726364	3R_6726364_SNP [dm3] 3R_10900642_SNP [dm6]	G	A	1.948e^-4	0.745	INTERGENIC
2R	7107070	2R_7107070_SNP [dm3] 2R_11219565_SNP [dm6]	T	C	1.957e^-4	0.746	UTR_5_PRIME Syx6 UPSTREAM Syx6 & 1 other INTRON CG9084	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	14749130	2L_14749130_SNP [dm3] 2L_14749130_SNP [dm6]	G	A	1.957e^-4	0.746	INTERGENIC
X	9410218	X_9410218_SNP [dm3] X_9516185_SNP [dm6]	T	C	1.970e^-4	0.748	INTRON CG32700
3L	806506	3L_806506_SNP [dm3] 3L_806506_SNP [dm6]	T	A	1.974e^-4	0.748	INTERGENIC
X	12793521	X_12793521_SNP [dm3] X_12899488_SNP [dm6]	T	A	1.975e^-4	0.748	UPSTREAM CG32650 INTRON CG32649	TF binding site mE1_TFBS_chinmo
2R	20340340	2R_20340340_SNP [dm3] 2R_24452817_SNP [dm6]	T	C	1.988e^-4	0.75	INTRON CG4563	TF binding site mE1_TFBS_chinmo
2L	21795611	2L_21795611_SNP [dm3] 2L_21795611_SNP [dm6]	C	G	1.992e^-4	0.75	UPSTREAM CG31612 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
2L	394905	2L_394905_SNP [dm3] 2L_394905_SNP [dm6]	T	G	1.993e^-4	0.75	INTERGENIC
2R	10417946	2R_10417946_DEL [dm3] 2R_14530441_DEL [dm6]	TTTAATTTTACT...	T	1.998e^-4	0.751	INTRON ttv
3L	11620990	3L_11620990_SNP [dm3] 3L_11627890_SNP [dm6]	G	C	2.008e^-4	0.752	UPSTREAM CG18815 DOWNSTREAM PCID2 INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	16421929	2R_16421929_SNP [dm3] 2R_20534424_SNP [dm6]	C	T	2.020e^-4	0.752	UTR_5_PRIME CG18067 UPSTREAM CG18067 DOWNSTREAM CG30154
3L	20794992	3L_20794992_SNP [dm3] 3L_20801892_SNP [dm6]	A	T	2.029e^-4	0.752	NON_SYNONYMOUS_CODING Spc105R	TF binding site mE1_TFBS_sens
3L	2426768	3L_2426768_INS [dm3] 3L_2426768_INS [dm6]	T	TAT	2.037e^-4	0.752	INTRON CG45186
2L	21065012	2L_21065012_SNP [dm3] 2L_21065012_SNP [dm6]	T	A	2.039e^-4	0.752	INTRON CG9265
2R	15895805	2R_15895805_SNP [dm3] 2R_20008300_SNP [dm6]	T	C	2.041e^-4	0.752	DOWNSTREAM CR44628 INTERGENIC
X	12680836	X_12680836_INS [dm3] X_12786803_INS [dm6]	G	GTG	2.056e^-4	0.752	UTR_3_PRIME Pde9
2L	1675714	2L_1675714_SNP [dm3] 2L_1675714_SNP [dm6]	T	A	2.077e^-4	0.752	INTRON chinmo
2L	1675720	2L_1675720_SNP [dm3] 2L_1675720_SNP [dm6]	C	G	2.077e^-4	0.752	INTRON chinmo
3L	16202321	3L_16202321_SNP [dm3] 3L_16209221_SNP [dm6]	G	T	2.078e^-4	0.752	INTERGENIC	TF binding site mE1_TFBS_cad
2L	10790313	2L_10790313_SNP [dm3] 2L_10790313_SNP [dm6]	A	G	2.079e^-4	0.752	START_GAINED CG31870 UTR_5_PRIME CG31870 INTRON CG31869
X	10517804	X_10517804_SNP [dm3] X_10623771_SNP [dm6]	A	G	2.080e^-4	0.752	UTR_3_PRIME CG9806 UPSTREAM Rab9Db
2L	6705710	2L_6705710_SNP [dm3] 2L_6705710_SNP [dm6]	T	C	2.081e^-4	0.752	INTRON Tsp
2R	9147190	2R_9147190_SNP [dm3] 2R_13259685_SNP [dm6]	G	A	2.081e^-4	0.752	UPSTREAM CG42319 INTERGENIC
X	11409478	X_11409478_SNP [dm3] X_11515445_SNP [dm6]	A	G	2.083e^-4	0.752	INTRON Drak	TF binding site mE1_TFBS_Kr
2L	9438520	2L_9438520_SNP [dm3] 2L_9438520_SNP [dm6]	C	T	2.085e^-4	0.752	INTRON numb	TF binding site BDTNP1_TFBS_dl
3R	26871242	3R_26871242_SNP [dm3] 3R_31045520_SNP [dm6]	G	A	2.090e^-4	0.752	UPSTREAM CG33920 INTRON CanA1
3L	19050701	3L_19050701_SNP [dm3] 3L_19057601_SNP [dm6]	G	C	2.097e^-4	0.752	INTERGENIC
2R	15697740	2R_15697740_SNP [dm3] 2R_19810235_SNP [dm6]	T	G	2.101e^-4	0.752	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11525805	3L_11525805_SNP [dm3] 3L_11532705_SNP [dm6]	G	A	2.102e^-4	0.752	INTRON Mob2
2L	8740651	2L_8740651_SNP [dm3] 2L_8740651_SNP [dm6]	T	A	2.105e^-4	0.752	UTR_5_PRIME raw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3L	3874896	3L_3874896_SNP [dm3] 3L_3874896_SNP [dm6]	T	A	2.114e^-4	0.752	INTERGENIC
X	6643083	X_6643083_INS [dm3] X_6749050_INS [dm6]	T	TCAGAGAT	2.119e^-4	0.752	INTRON CG14439
X	17935682	X_17935682_SNP [dm3] X_18041649_SNP [dm6]	T	C	2.120e^-4	0.752	INTRON Sh
X	19598019	X_19598019_SNP [dm3] X_19703986_SNP [dm6]	A	G	2.124e^-4	0.752	SYNONYMOUS_CODING CG14232 UPSTREAM CG14230	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	11464759	3R_11464759_SNP [dm3] 3R_15639037_SNP [dm6]	C	T	2.125e^-4	0.752	DOWNSTREAM CG43336 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	1565411	3L_1565411_SNP [dm3] 3L_1565411_SNP [dm6]	C	T	2.125e^-4	0.752	START_GAINED CG12003 UTR_5_PRIME CG12003 INTRON CG7879	TF binding site mE1_TFBS_sens
2L	13229249	2L_13229249_MNP [dm3] 2L_13229249_MNP [dm6]	GATT	AGGC	2.132e^-4	0.752	UPSTREAM CG16815 DOWNSTREAM CG16813 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
X	9843864	X_9843864_SNP [dm3] X_9949831_SNP [dm6]	G	A	2.134e^-4	0.752	INTERGENIC
3R	20231859	3R_20231859_SNP [dm3] 3R_24406137_SNP [dm6]	A	C	2.138e^-4	0.752	INTRON nAChRalpha1
2R	16422146	2R_16422146_SNP [dm3] 2R_20534641_SNP [dm6]	T	A	2.153e^-4	0.752	DOWNSTREAM CG30154 INTRON CG18067
3L	12310472	3L_12310472_SNP [dm3] 3L_12317372_SNP [dm6]	C	G	2.159e^-4	0.752	INTERGENIC
3R	10436858	3R_10436858_SNP [dm3] 3R_14611136_SNP [dm6]	T	C	2.163e^-4	0.752	INTRON CG14853
3L	11168350	3L_11168350_SNP [dm3] 3L_11175250_SNP [dm6]	C	T	2.163e^-4	0.752	INTRON CG14142	TF binding site mE1_TFBS_cad
X	8227006	X_8227006_DEL [dm3] X_8332973_DEL [dm6]	CCACTTCG	C	2.165e^-4	0.752	INTRON nAChRalpha3
2R	7557741	2R_7557741_SNP [dm3] 2R_11670236_SNP [dm6]	T	A	2.170e^-4	0.752	INTRON Roc2 & 1 other
2L	637988	2L_637988_SNP [dm3] 2L_637988_SNP [dm6]	T	A	2.177e^-4	0.752	INTERGENIC
X	17955171	X_17955171_SNP [dm3] X_18061138_SNP [dm6]	G	A	2.181e^-4	0.752	INTRON Sh
2R	9343439	2R_9343439_SNP [dm3] 2R_13455934_SNP [dm6]	C	A	2.182e^-4	0.752	INTRON arr
X	17947626	X_17947626_SNP [dm3] X_18053593_SNP [dm6]	G	A	2.183e^-4	0.752	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	757741	X_757741_INS [dm3] X_863708_INS [dm6]	A	ATTCGGGCGGGA...	2.187e^-4	0.752	DOWNSTREAM CG14634 INTRON CG43867
2R	8908601	2R_8908601_SNP [dm3] 2R_13021096_SNP [dm6]	T	A	2.194e^-4	0.752	INTERGENIC	TF binding site mE1_TFBS_cad
3L	2646310	3L_2646310_SNP [dm3] 3L_2646310_SNP [dm6]	T	C	2.197e^-4	0.752	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5758251	2L_5758251_SNP [dm3] 2L_5758251_SNP [dm6]	C	A	2.200e^-4	0.752	INTRON CG11030
2L	8448559	2L_8448559_SNP [dm3] 2L_8448559_SNP [dm6]	C	T	2.212e^-4	0.752	SYNONYMOUS_CODING U26
2L	17789776	2L_17789776_SNP [dm3] 2L_17789776_SNP [dm6]	T	A	2.214e^-4	0.752	INTRON CadN2
2R	21127836	2R_21127836_INS [dm3] 2R_25240313_INS [dm6]	T	TACC	2.214e^-4	0.752	INTRON CG9380
3R	22226609	3R_22226609_SNP [dm3] 3R_26400887_SNP [dm6]	G	T	2.226e^-4	0.752	INTERGENIC
3L	2170084	3L_2170084_SNP [dm3] 3L_2170084_SNP [dm6]	A	C	2.228e^-4	0.752	SYNONYMOUS_CODING CG5704 UPSTREAM CG15879
2R	11809705	2R_11809705_SNP [dm3] 2R_15922200_SNP [dm6]	G	A	2.228e^-4	0.752	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
3L	5694802	3L_5694802_SNP [dm3] 3L_5701702_SNP [dm6]	T	G	2.232e^-4	0.752	INTRON sif
3R	18780271	3R_18780271_SNP [dm3] 3R_22954549_SNP [dm6]	G	A	2.246e^-4	0.752	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	10544076	X_10544076_SNP [dm3] X_10650043_SNP [dm6]	C	T	2.255e^-4	0.752	INTRON X11Lbeta
2L	5559719	2L_5559719_SNP [dm3] 2L_5559719_SNP [dm6]	T	C	2.255e^-4	0.752	SYNONYMOUS_CODING GluRIIB DOWNSTREAM GluRIIA	TF binding site mE1_TFBS_inv
3L	2646789	3L_2646789_SNP [dm3] 3L_2646789_SNP [dm6]	T	G	2.256e^-4	0.752	UTR_3_PRIME CG1143 DOWNSTREAM CG1143
3L	17889656	3L_17889656_SNP [dm3] 3L_17896556_SNP [dm6]	C	T	2.258e^-4	0.752	UPSTREAM Tsp74F INTERGENIC	TF binding site mE1_TFBS_HSA
2R	19073621	2R_19073621_SNP [dm3] 2R_23186098_SNP [dm6]	G	C	2.260e^-4	0.752	DOWNSTREAM CG13539 INTRON CG34371
3L	15610573	3L_15610573_SNP [dm3] 3L_15617473_SNP [dm6]	G	A	2.260e^-4	0.752	INTRON comm3
3L	15610581	3L_15610581_DEL [dm3] 3L_15617481_DEL [dm6]	GGCC	TT	2.260e^-4	0.752	INTRON comm3
3L	15610600	3L_15610600_SNP [dm3] 3L_15617500_SNP [dm6]	A	C	2.260e^-4	0.752	INTRON comm3
3R	13570372	3R_13570372_SNP [dm3] 3R_17744650_SNP [dm6]	C	A	2.261e^-4	0.752	INTRON TyrRII	TF binding site mE1_TFBS_cad
X	9816859	X_9816859_DEL [dm3] X_9922826_DEL [dm6]	CC	C	2.266e^-4	0.752	INTERGENIC
X	7621051	X_7621051_SNP [dm3] X_7727018_SNP [dm6]	G	A	2.269e^-4	0.752	SYNONYMOUS_CODING NELF-B	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	14185062	3L_14185062_SNP [dm3] 3L_14191962_SNP [dm6]	T	C	2.269e^-4	0.752	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna
2L	4147037	2L_4147037_SNP [dm3] 2L_4147037_SNP [dm6]	A	T	2.276e^-4	0.752	INTERGENIC
2R	20348140	2R_20348140_SNP [dm3] 2R_24460617_SNP [dm6]	G	A	2.277e^-4	0.752	INTRON CG13579
2L	15635046	2L_15635046_SNP [dm3] 2L_15635046_SNP [dm6]	T	C	2.277e^-4	0.752	DOWNSTREAM CG18480 INTERGENIC
3L	11169351	3L_11169351_SNP [dm3] 3L_11176251_SNP [dm6]	C	A	2.280e^-4	0.752	UTR_3_PRIME CG14142 DOWNSTREAM GlcAT-P
3L	15483300	3L_15483300_SNP [dm3] 3L_15490200_SNP [dm6]	A	C	2.284e^-4	0.752	INTERGENIC
X	17951829	X_17951829_SNP [dm3] X_18057796_SNP [dm6]	A	C	2.285e^-4	0.752	INTRON Sh
2R	11532943	2R_11532943_SNP [dm3] 2R_15645438_SNP [dm6]	A	G	2.291e^-4	0.752	INTRON CG42524	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	9734766	3L_9734766_SNP [dm3] 3L_9741666_SNP [dm6]	G	A	2.296e^-4	0.752	INTRON CG42268 & 1 other
2R	10343486	2R_10343486_SNP [dm3] 2R_14455981_SNP [dm6]	T	A	2.298e^-4	0.752	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17903053	3L_17903053_SNP [dm3] 3L_17909953_SNP [dm6]	C	A	2.300e^-4	0.752	NON_SYNONYMOUS_CODING CG5290 DOWNSTREAM CG14353
2L	19840286	2L_19840286_SNP [dm3] 2L_19840286_SNP [dm6]	C	A	2.309e^-4	0.754	INTRON sick
3R	12898282	3R_12898282_SNP [dm3] 3R_17072560_SNP [dm6]	A	G	2.320e^-4	0.756	UPSTREAM mRpS11 INTRON Ns1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4759836	X_4759836_DEL [dm3] X_4865803_DEL [dm6]	AGCCAA	A	2.330e^-4	0.758	INTRON CG42594
X	18486138	X_18486138_SNP [dm3] X_18592105_SNP [dm6]	C	T	2.342e^-4	0.761	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12793504	X_12793504_SNP [dm3] X_12899471_SNP [dm6]	C	T	2.347e^-4	0.761	UPSTREAM CG32650 INTRON CG32649	TF binding site mE1_TFBS_chinmo
X	16876913	X_16876913_SNP [dm3] X_16982880_SNP [dm6]	T	G	2.353e^-4	0.762	INTRON CG45002
3L	2362770	3L_2362770_SNP [dm3] 3L_2362770_SNP [dm6]	C	A	2.360e^-4	0.762	DOWNSTREAM CG13801 INTERGENIC
2R	7451760	2R_7451760_SNP [dm3] 2R_11564255_SNP [dm6]	C	T	2.362e^-4	0.762	INTERGENIC
2R	10346040	2R_10346040_SNP [dm3] 2R_14458535_SNP [dm6]	G	T	2.365e^-4	0.762	UTR_5_PRIME Oaz INTRON Oaz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	2651959	3L_2651959_SNP [dm3] 3L_2651959_SNP [dm6]	A	T	2.380e^-4	0.763	UPSTREAM Snup & 2 others INTERGENIC
3L	2646481	3L_2646481_SNP [dm3] 3L_2646481_SNP [dm6]	T	C	2.382e^-4	0.763	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad
2R	20190953	2R_20190953_SNP [dm3] 2R_24303430_SNP [dm6]	T	C	2.385e^-4	0.763	INTERGENIC
3L	6754444	3L_6754444_INS [dm3] 3L_6761344_INS [dm6]	A	ATA	2.390e^-4	0.763	UPSTREAM CG32392 INTRON CG32392
2R	4953916	2R_4953916_SNP [dm3] 2R_9066411_SNP [dm6]	G	T	2.404e^-4	0.763	INTRON ana	regulatory region REDfly_CRMs
X	17945999	X_17945999_SNP [dm3] X_18051966_SNP [dm6]	T	C	2.405e^-4	0.763	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7025296	2L_7025296_SNP [dm3] 2L_7025296_SNP [dm6]	C	A	2.406e^-4	0.763	NON_SYNONYMOUS_CODING CG31908	TF binding site mE1_TFBS_cad
3R	13682812	3R_13682812_SNP [dm3] 3R_17857090_SNP [dm6]	G	C	2.406e^-4	0.763	INTRON tinc
3R	24362223	3R_24362223_SNP [dm3] 3R_28536501_SNP [dm6]	C	T	2.408e^-4	0.763	INTRON Ppn
2L	9443434	2L_9443434_SNP [dm3] 2L_9443434_SNP [dm6]	C	T	2.410e^-4	0.763	INTRON numb
X	13348898	X_13348898_INS [dm3] X_13454865_INS [dm6]	G	TT	2.415e^-4	0.763	INTRON Neto
X	17947646	X_17947646_INS [dm3] X_18053613_INS [dm6]	G	GTGTGTATG	2.428e^-4	0.764	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12532444	3L_12532444_SNP [dm3] 3L_12539344_SNP [dm6]	C	T	2.428e^-4	0.764	DOWNSTREAM sowah INTRON sowah
X	10765530	X_10765530_SNP [dm3] X_10871497_SNP [dm6]	T	A	2.436e^-4	0.764	DOWNSTREAM CG2157 & 1 other INTRON CG1637	TF binding site mE1_TFBS_sens
2L	8697403	2L_8697403_SNP [dm3] 2L_8697403_SNP [dm6]	T	G	2.437e^-4	0.764	INTRON Hnf4
3R	14607643	3R_14607643_SNP [dm3] 3R_18781921_SNP [dm6]	C	T	2.438e^-4	0.764	INTRON CG7720
3L	12310471	3L_12310471_SNP [dm3] 3L_12317371_SNP [dm6]	A	C	2.443e^-4	0.765	INTERGENIC
3R	14825235	3R_14825235_SNP [dm3] 3R_18999513_SNP [dm6]	A	G	2.459e^-4	0.767	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15617596	3L_15617596_SNP [dm3] 3L_15624496_SNP [dm6]	T	A	2.460e^-4	0.767	DOWNSTREAM CG7372 INTRON comm3	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	2426682	3L_2426682_SNP [dm3] 3L_2426682_SNP [dm6]	T	G	2.465e^-4	0.767	INTRON CG45186
X	10462715	X_10462715_SNP [dm3] X_10568682_SNP [dm6]	A	G	2.467e^-4	0.767	INTRON spri
X	12793517	X_12793517_SNP [dm3] X_12899484_SNP [dm6]	T	C	2.475e^-4	0.768	UPSTREAM CG32650 INTRON CG32649	TF binding site mE1_TFBS_chinmo
2L	5989951	2L_5989951_SNP [dm3] 2L_5989951_SNP [dm6]	T	A	2.480e^-4	0.768	UTR_3_PRIME lid DOWNSTREAM lid
2R	8912185	2R_8912185_SNP [dm3] 2R_13024680_SNP [dm6]	C	T	2.483e^-4	0.768	INTERGENIC
3L	2644985	3L_2644985_SNP [dm3] 3L_2644985_SNP [dm6]	T	A	2.498e^-4	0.771	UPSTREAM CG1143 INTERGENIC
2R	495298	2R_495298_SNP [dm3] 2R_4607793_SNP [dm6]	C	T	2.501e^-4	0.771	INTRON p120ctn	transposable element FlyBase
3R	2026306	3R_2026306_SNP [dm3] 3R_6200584_SNP [dm6]	A	C	2.509e^-4	0.772	INTRON Osi24
X	11756923	X_11756923_SNP [dm3] X_11862890_SNP [dm6]	C	A	2.514e^-4	0.772	INTRON ATP7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4821762	3L_4821762_DEL [dm3] 3L_4821762_DEL [dm6]	ATTCTAGCACA...	A	2.519e^-4	0.773	INTRON Dhc64C
2L	19822544	2L_19822544_SNP [dm3] 2L_19822544_SNP [dm6]	A	C	2.523e^-4	0.773	INTRON sick
3L	5884765	3L_5884765_SNP [dm3] 3L_5891665_SNP [dm6]	A	G	2.526e^-4	0.773	INTERGENIC
2R	16517414	2R_16517414_SNP [dm3] 2R_20629909_SNP [dm6]	T	C	2.530e^-4	0.773	SYNONYMOUS_CODING Rcd6	TF binding site mE1_TFBS_chinmo
3L	1564675	3L_1564675_SNP [dm3] 3L_1564675_SNP [dm6]	C	T	2.542e^-4	0.773	UPSTREAM CG12003 INTRON CG7879
3L	14498347	3L_14498347_SNP [dm3] 3L_14505247_SNP [dm6]	T	C	2.546e^-4	0.773	INTRON bbg
2R	11598183	2R_11598183_SNP [dm3] 2R_15710678_SNP [dm6]	A	G	2.547e^-4	0.773	DOWNSTREAM CG30083 INTERGENIC
2R	18797338	2R_18797338_SNP [dm3] 2R_22909815_SNP [dm6]	T	C	2.547e^-4	0.773	INTRON nahoda
2L	8398532	2L_8398532_SNP [dm3] 2L_8398532_SNP [dm6]	T	G	2.552e^-4	0.773	UPSTREAM CG13386 DOWNSTREAM CG13385 INTERGENIC
X	17951938	X_17951938_SNP [dm3] X_18057905_SNP [dm6]	G	A	2.557e^-4	0.773	INTRON Sh
3R	27112009	3R_27112009_SNP [dm3] 3R_31286287_SNP [dm6]	C	T	2.574e^-4	0.776	INTERGENIC
2R	18817694	2R_18817694_SNP [dm3] 2R_22930171_SNP [dm6]	A	G	2.588e^-4	0.776	DOWNSTREAM CG42678 INTRON CG42678	TF binding site mE1_TFBS_inv
3L	13488539	3L_13488539_SNP [dm3] 3L_13495439_SNP [dm6]	C	T	2.592e^-4	0.776	UPSTREAM Tgi INTRON Tgi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15077609	3R_15077609_SNP [dm3] 3R_19251887_SNP [dm6]	C	A	2.594e^-4	0.776	INTERGENIC
X	12782881	X_12782881_INS [dm3] X_12888848_INS [dm6]	T	TT	2.604e^-4	0.776	INTRON Pde9
X	8222268	X_8222268_SNP [dm3] X_8328235_SNP [dm6]	A	T	2.605e^-4	0.776	INTRON nAChRalpha3
2R	20355656	2R_20355656_SNP [dm3] 2R_24468133_SNP [dm6]	A	G	2.605e^-4	0.776	INTRON CG13579
3L	15617609	3L_15617609_SNP [dm3] 3L_15624509_SNP [dm6]	A	G	2.607e^-4	0.776	DOWNSTREAM CG7372 INTRON comm3	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	4490935	X_4490935_SNP [dm3] X_4596902_SNP [dm6]	T	C	2.610e^-4	0.776	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9147240	2R_9147240_SNP [dm3] 2R_13259735_SNP [dm6]	G	T	2.620e^-4	0.776	UPSTREAM CG42319 INTERGENIC
2L	13211544	2L_13211544_SNP [dm3] 2L_13211544_SNP [dm6]	T	C	2.620e^-4	0.776	NON_SYNONYMOUS_CODING CG15482 DOWNSTREAM Pect & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15418493	2R_15418493_SNP [dm3] 2R_19530988_SNP [dm6]	C	A	2.625e^-4	0.776	INTRON sm	TF binding site mE1_TFBS_sens
2L	11388359	2L_11388359_SNP [dm3] 2L_11388359_SNP [dm6]	G	C	2.626e^-4	0.776	EXON CR43681	regulatory region REDfly_CRMs
X	4471195	X_4471195_SNP [dm3] X_4577162_SNP [dm6]	C	A	2.634e^-4	0.776	INTRON CR32773
3R	25323777	3R_25323777_SNP [dm3] 3R_29498055_SNP [dm6]	A	G	2.636e^-4	0.776	DOWNSTREAM Trc8 INTRON CG2010	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	10702234	3L_10702234_SNP [dm3] 3L_10709134_SNP [dm6]	T	C	2.641e^-4	0.776	INTERGENIC
3L	11871963	3L_11871963_SNP [dm3] 3L_11878863_SNP [dm6]	A	C	2.647e^-4	0.776	UPSTREAM CG14128 INTRON CG44837
3L	2170090	3L_2170090_SNP [dm3] 3L_2170090_SNP [dm6]	A	G	2.652e^-4	0.776	SYNONYMOUS_CODING CG5704 UPSTREAM CG15879
2R	18952219	2R_18952219_SNP [dm3] 2R_23064696_SNP [dm6]	T	C	2.657e^-4	0.776	UPSTREAM PPO3 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
3L	16202369	3L_16202369_SNP [dm3] 3L_16209269_SNP [dm6]	G	A	2.658e^-4	0.776	INTERGENIC	TF binding site mE1_TFBS_cad
2L	21775574	2L_21775574_INS [dm3] 2L_21775574_INS [dm6]	A	ATC	2.662e^-4	0.776	INTRON CG31612	TF binding site mE1_TFBS_HSA transposable element FlyBase
3L	9734769	3L_9734769_INS [dm3] 3L_9741669_INS [dm6]	T	TGT	2.667e^-4	0.776	INTRON CG42268 & 1 other
2L	393515	2L_393515_SNP [dm3] 2L_393515_SNP [dm6]	A	G	2.668e^-4	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	8156701	X_8156701_SNP [dm3] X_8262668_SNP [dm6]	G	T	2.668e^-4	0.776	INTRON CG1632
2R	17122056	2R_17122056_SNP [dm3] 2R_21234551_SNP [dm6]	C	T	2.670e^-4	0.776	INTRON ASPP
X	17935639	X_17935639_SNP [dm3] X_18041606_SNP [dm6]	A	G	2.687e^-4	0.779	INTRON Sh
3L	806508	3L_806508_SNP [dm3] 3L_806508_SNP [dm6]	A	C	2.688e^-4	0.779	INTERGENIC
3L	20187373	3L_20187373_SNP [dm3] 3L_20194273_SNP [dm6]	G	T	2.700e^-4	0.78	INTRON CG42674
3R	21295516	3R_21295516_DEL [dm3] 3R_25469794_DEL [dm6]	ATTAA	A	2.702e^-4	0.78	INTRON Fur1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	7002231	2L_7002231_SNP [dm3] 2L_7002231_SNP [dm6]	G	A	2.703e^-4	0.78	INTRON uif
X	15985409	X_15985409_SNP [dm3] X_16091376_SNP [dm6]	T	A	2.711e^-4	0.78	UTR_5_PRIME Tob	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	7612558	X_7612558_SNP [dm3] X_7718525_SNP [dm6]	A	G	2.718e^-4	0.78	UPSTREAM CG15478 INTERGENIC
3R	2707947	3R_2707947_SNP [dm3] 3R_6882225_SNP [dm6]	C	G	2.718e^-4	0.78	INTRON CR44931	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	16570715	3L_16570715_SNP [dm3] 3L_16577615_SNP [dm6]	C	G	2.727e^-4	0.78	NON_SYNONYMOUS_CODING nxf2 DOWNSTREAM mbf1	transposable element FlyBase
3R	24412419	3R_24412419_SNP [dm3] 3R_28586697_SNP [dm6]	G	A	2.730e^-4	0.78	EXON MRE23	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
3L	14489501	3L_14489501_DEL [dm3] 3L_14496401_DEL [dm6]	TA	T	2.734e^-4	0.78	INTRON bbg	TF binding site mE1_TFBS_cad
3L	6927646	3L_6927646_SNP [dm3] 3L_6934546_SNP [dm6]	A	T	2.735e^-4	0.78	NON_SYNONYMOUS_CODING CG14820
2L	1229403	2L_1229403_SNP [dm3] 2L_1229403_SNP [dm6]	C	T	2.757e^-4	0.78	NON_SYNONYMOUS_CODING CG42329
3R	10435116	3R_10435116_SNP [dm3] 3R_14609394_SNP [dm6]	T	C	2.770e^-4	0.78	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9147400	2R_9147400_SNP [dm3] 2R_13259895_SNP [dm6]	A	G	2.772e^-4	0.78	UPSTREAM CG42319 INTERGENIC
3L	2645026	3L_2645026_SNP [dm3] 3L_2645026_SNP [dm6]	T	A	2.775e^-4	0.78	UPSTREAM CG1143 INTERGENIC
3L	13553816	3L_13553816_DEL [dm3] 3L_13560716_DEL [dm6]	GTCGACGTAGCGACACT...	G	2.776e^-4	0.78	INTRON bru-3
2L	939164	2L_939164_SNP [dm3] 2L_939164_SNP [dm6]	T	C	2.777e^-4	0.78	INTRON CG4341	TF binding site mE1_TFBS_chinmo
X	7617550	X_7617550_SNP [dm3] X_7723517_SNP [dm6]	T	C	2.780e^-4	0.78	SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	4952865	2R_4952865_SNP [dm3] 2R_9065360_SNP [dm6]	G	A	2.785e^-4	0.78	INTRON ana	regulatory region REDfly_CRMs
3L	14498346	3L_14498346_SNP [dm3] 3L_14505246_SNP [dm6]	G	T	2.787e^-4	0.78	INTRON bbg
3L	6925023	3L_6925023_SNP [dm3] 3L_6931923_SNP [dm6]	T	A	2.802e^-4	0.78	UTR_5_PRIME CG45413
X	7613947	X_7613947_SNP [dm3] X_7719914_SNP [dm6]	C	T	2.804e^-4	0.78	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17935657	X_17935657_SNP [dm3] X_18041624_SNP [dm6]	C	T	2.805e^-4	0.78	INTRON Sh
3L	2591036	3L_2591036_SNP [dm3] 3L_2591036_SNP [dm6]	C	A	2.812e^-4	0.78	UTR_5_PRIME dos INTRON dos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Stat92E
3L	6927126	3L_6927126_SNP [dm3] 3L_6934026_SNP [dm6]	G	C	2.815e^-4	0.78	INTRON CG14820
3R	14775733	3R_14775733_SNP [dm3] 3R_18950011_SNP [dm6]	G	A	2.821e^-4	0.78	UPSTREAM CG42613 & 1 other INTRON CG42613
X	651581	X_651581_SNP [dm3] X_757548_SNP [dm6]	T	A	2.822e^-4	0.78	INTRON CG5254
3R	9817342	3R_9817342_INS [dm3] 3R_13991620_INS [dm6]	C	CCATG	2.829e^-4	0.78	INTRON rdx
3R	9817346	3R_9817346_INS [dm3] 3R_13991624_INS [dm6]	T	TGATT	2.829e^-4	0.78	INTRON rdx
2L	13832230	2L_13832230_SNP [dm3] 2L_13832230_SNP [dm6]	C	T	2.829e^-4	0.78	SYNONYMOUS_CODING DNApol-gamma35 UTR_3_PRIME CG33649 DOWNSTREAM Orc5	TF binding site mE1_TFBS_sens
2L	19822024	2L_19822024_SNP [dm3] 2L_19822024_SNP [dm6]	C	T	2.830e^-4	0.78	INTRON sick
2L	8590460	2L_8590460_SNP [dm3] 2L_8590460_SNP [dm6]	T	A	2.838e^-4	0.78	INTRON Sema-1a EXON CR43855
2L	3437649	2L_3437649_SNP [dm3] 2L_3437649_SNP [dm6]	A	T	2.838e^-4	0.78	INTERGENIC
X	7622623	X_7622623_SNP [dm3] X_7728590_SNP [dm6]	G	A	2.839e^-4	0.78	UPSTREAM CG12155 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	8785031	X_8785031_SNP [dm3] X_8890998_SNP [dm6]	G	T	2.843e^-4	0.78	INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	14320848	3L_14320848_SNP [dm3] 3L_14327748_SNP [dm6]	C	T	2.846e^-4	0.78	INTRON fz
2L	9438564	2L_9438564_SNP [dm3] 2L_9438564_SNP [dm6]	G	A	2.853e^-4	0.78	INTRON numb	TF binding site BDTNP1_TFBS_dl
3R	14728940	3R_14728940_SNP [dm3] 3R_18903218_SNP [dm6]	G	A	2.854e^-4	0.78	UPSTREAM CG14294 & 1 other INTERGENIC
3L	10866281	3L_10866281_SNP [dm3] 3L_10873181_SNP [dm6]	G	A	2.860e^-4	0.78	SYNONYMOUS_CODING tna	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10030942	X_10030942_SNP [dm3] X_10136909_SNP [dm6]	C	T	2.862e^-4	0.78	INTRON CR44894 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13758024	2L_13758024_SNP [dm3] 2L_13758024_SNP [dm6]	A	G	2.862e^-4	0.78	INTRON TM9SF4
2R	7328313	2R_7328313_SNP [dm3] 2R_11440808_SNP [dm6]	G	A	2.868e^-4	0.78	INTRON CG7777
3L	13924061	3L_13924061_SNP [dm3] 3L_13930961_SNP [dm6]	C	T	2.873e^-4	0.78	SYNONYMOUS_CODING Gl	TF binding site mE1_TFBS_cad
3L	14185061	3L_14185061_SNP [dm3] 3L_14191961_SNP [dm6]	A	C	2.878e^-4	0.78	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna
2R	5103025	2R_5103025_SNP [dm3] 2R_9215520_SNP [dm6]	C	G	2.886e^-4	0.78	DOWNSTREAM CR44451 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	5423421	3R_5423421_SNP [dm3] 3R_9597699_SNP [dm6]	T	C	2.886e^-4	0.78	INTRON CG8312
2R	15843770	2R_15843770_SNP [dm3] 2R_19956265_SNP [dm6]	G	A	2.894e^-4	0.78	UTR_5_PRIME CG44623
3R	15767983	3R_15767983_SNP [dm3] 3R_19942261_SNP [dm6]	T	C	2.895e^-4	0.78	INTRON Hs6st
3R	21055623	3R_21055623_DEL [dm3] 3R_25229901_DEL [dm6]	TAG	C	2.903e^-4	0.78	INTRON Cad96Cb
3R	15811559	3R_15811559_SNP [dm3] 3R_19985837_SNP [dm6]	C	T	2.911e^-4	0.78	INTRON Hs6st
2R	14011169	2R_14011169_SNP [dm3] 2R_18123664_SNP [dm6]	C	T	2.915e^-4	0.78	INTRON stau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11020859	3L_11020859_SNP [dm3] 3L_11027759_SNP [dm6]	T	A	2.918e^-4	0.78	DOWNSTREAM CG32079 INTRON CG32081
2R	16388726	2R_16388726_SNP [dm3] 2R_20501221_SNP [dm6]	C	A	2.922e^-4	0.78	INTERGENIC	regulatory region REDfly_CRMs
3R	21891631	3R_21891631_SNP [dm3] 3R_26065909_SNP [dm6]	T	A	2.924e^-4	0.78	INTERGENIC
2R	9725239	2R_9725239_SNP [dm3] 2R_13837734_SNP [dm6]	A	C	2.932e^-4	0.78	NON_SYNONYMOUS_CODING CG6347
3L	7138636	3L_7138636_SNP [dm3] 3L_7145536_SNP [dm6]	G	T	2.934e^-4	0.78	SPLICE_SITE_REGION corn INTRON corn
3L	5475584	3L_5475584_SNP [dm3] 3L_5482484_SNP [dm6]	T	A	2.938e^-4	0.78	SYNONYMOUS_CODING CG4835
2L	3154459	2L_3154459_SNP [dm3] 2L_3154459_SNP [dm6]	A	T	2.944e^-4	0.78	INTRON Mad
2L	14666738	2L_14666738_SNP [dm3] 2L_14666738_SNP [dm6]	G	A	2.946e^-4	0.78	INTRON osp
3R	15810871	3R_15810871_INS [dm3] 3R_19985149_INS [dm6]	A	AA	2.952e^-4	0.78	INTRON Hs6st
3L	2651826	3L_2651826_SNP [dm3] 3L_2651826_SNP [dm6]	T	C	2.953e^-4	0.78	UTR_5_PRIME Aats-pro UPSTREAM Snup & 1 other
3L	18013431	3L_18013431_SNP [dm3] 3L_18020331_SNP [dm6]	C	T	2.954e^-4	0.78	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
X	14841777	X_14841777_SNP [dm3] X_14947744_SNP [dm6]	A	C	2.955e^-4	0.78	INTRON pdgy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2022774	3R_2022774_DEL [dm3] 3R_6197052_DEL [dm6]	CTCGCAGTC	C	2.958e^-4	0.78	INTERGENIC
3R	24132597	3R_24132597_SNP [dm3] 3R_28306875_SNP [dm6]	A	T	2.971e^-4	0.78	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	3177340	2R_3177340_SNP [dm3] 2R_7289835_SNP [dm6]	G	A	2.983e^-4	0.78	INTRON pwn
2R	3599792	2R_3599792_SNP [dm3] 2R_7712287_SNP [dm6]	A	G	2.986e^-4	0.78	UPSTREAM CG1942 DOWNSTREAM mir-4909 & 1 other INTERGENIC
2L	13875576	2L_13875576_SNP [dm3] 2L_13875576_SNP [dm6]	A	G	2.989e^-4	0.78	INTRON CenG1A
3R	7953305	3R_7953305_DEL [dm3] 3R_12127583_DEL [dm6]	ACATACACTAAG...	A	2.995e^-4	0.78	INTRON CG4702	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	2939617	2L_2939617_SNP [dm3] 2L_2939617_SNP [dm6]	T	C	2.996e^-4	0.78	INTRON lilli
3R	9823760	3R_9823760_SNP [dm3] 3R_13998038_SNP [dm6]	T	C	2.999e^-4	0.78	INTRON rdx	TF binding site mE1_TFBS_HSA
X	11330757	X_11330757_SNP [dm3] X_11436724_SNP [dm6]	A	G	3.000e^-4	0.78	INTRON Evi5
2L	13268018	2L_13268018_SNP [dm3] 2L_13268018_SNP [dm6]	A	G	3.004e^-4	0.78	INTRON CG44085
3R	27136505	3R_27136505_SNP [dm3] 3R_31310783_SNP [dm6]	T	A	3.008e^-4	0.78	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	13229266	2L_13229266_INS [dm3] 2L_13229266_INS [dm6]	T	TT	3.027e^-4	0.78	UPSTREAM CG16815 DOWNSTREAM CG16813 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	13229272	2L_13229272_SNP [dm3] 2L_13229272_SNP [dm6]	C	T	3.027e^-4	0.78	UPSTREAM CG16815 DOWNSTREAM CG16813 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	7062674	2R_7062674_SNP [dm3] 2R_11175169_SNP [dm6]	G	A	3.030e^-4	0.78	INTRON shn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10368014	2R_10368014_SNP [dm3] 2R_14480509_SNP [dm6]	T	A	3.034e^-4	0.78	UPSTREAM L INTERGENIC	TF binding site mE1_TFBS_bab1
2R	15903576	2R_15903576_SNP [dm3] 2R_20016071_SNP [dm6]	T	G	3.042e^-4	0.78	DOWNSTREAM CR44630 INTERGENIC
3R	10435114	3R_10435114_SNP [dm3] 3R_14609392_SNP [dm6]	T	A	3.042e^-4	0.78	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	21081580	X_21081580_SNP [dm3] X_21210553_SNP [dm6]	A	G	3.042e^-4	0.78	INTRON CG32521
3L	952094	3L_952094_SNP [dm3] 3L_952094_SNP [dm6]	T	C	3.049e^-4	0.78	INTRON Glut1
2L	18930447	2L_18930447_SNP [dm3] 2L_18930447_SNP [dm6]	G	A	3.052e^-4	0.78	INTRON ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2926734	X_2926734_SNP [dm3] X_3032701_SNP [dm6]	C	A	3.052e^-4	0.78	INTRON kirre
2L	262506	2L_262506_SNP [dm3] 2L_262506_SNP [dm6]	G	A	3.060e^-4	0.78	UTR_3_PRIME CG17075 DOWNSTREAM CG17075 INTRON CG3645 EXON CR44219
3L	8590702	3L_8590702_SNP [dm3] 3L_8597602_SNP [dm6]	G	A	3.061e^-4	0.78	NON_SYNONYMOUS_CODING CG43078	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11464740	3R_11464740_SNP [dm3] 3R_15639018_SNP [dm6]	T	A	3.062e^-4	0.78	DOWNSTREAM CG43336 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	11464746	3R_11464746_SNP [dm3] 3R_15639024_SNP [dm6]	T	A	3.062e^-4	0.78	DOWNSTREAM CG43336 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	8681778	3L_8681778_SNP [dm3] 3L_8688678_SNP [dm6]	A	C	3.068e^-4	0.78	INTERGENIC
2R	12798720	2R_12798720_SNP [dm3] 2R_16911215_SNP [dm6]	T	G	3.068e^-4	0.78	INTERGENIC
2R	15583707	2R_15583707_SNP [dm3] 2R_19696202_SNP [dm6]	G	A	3.069e^-4	0.78	EXON CR44506	regulatory region REDfly_CRMs
2R	17537108	2R_17537108_SNP [dm3] 2R_21649603_SNP [dm6]	G	A	3.076e^-4	0.78	INTRON CG10082	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	19822022	2L_19822022_SNP [dm3] 2L_19822022_SNP [dm6]	C	T	3.080e^-4	0.78	INTRON sick
3L	3798197	3L_3798197_SNP [dm3] 3L_3798197_SNP [dm6]	G	T	3.080e^-4	0.78	INTRON CG32264
2L	19522235	2L_19522235_SNP [dm3] 2L_19522235_SNP [dm6]	A	G	3.101e^-4	0.78	SYNONYMOUS_CODING CG10132	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10345162	2R_10345162_SNP [dm3] 2R_14457657_SNP [dm6]	C	T	3.119e^-4	0.78	UPSTREAM Oaz INTRON Oaz	TF binding site mE1_TFBS_HSA
3L	15483243	3L_15483243_SNP [dm3] 3L_15490143_SNP [dm6]	G	C	3.122e^-4	0.78	INTERGENIC
X	17911160	X_17911160_SNP [dm3] X_18017127_SNP [dm6]	A	G	3.129e^-4	0.78	INTRON Sh
2R	16388595	2R_16388595_SNP [dm3] 2R_20501090_SNP [dm6]	A	C	3.131e^-4	0.78	INTERGENIC	regulatory region REDfly_CRMs
2L	637432	2L_637432_SNP [dm3] 2L_637432_SNP [dm6]	C	A	3.136e^-4	0.78	INTERGENIC
X	12891682	X_12891682_SNP [dm3] X_12997649_SNP [dm6]	C	T	3.139e^-4	0.78	INTRON rad
3L	4025813	3L_4025813_SNP [dm3] 3L_4025813_SNP [dm6]	A	G	3.141e^-4	0.78	UTR_5_PRIME CG11594 UPSTREAM CG11594 & 1 other INTRON CG11594
3L	20532270	3L_20532270_SNP [dm3] 3L_20539170_SNP [dm6]	T	C	3.143e^-4	0.78	INTRON Rcd2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10417886	2R_10417886_SNP [dm3] 2R_14530381_SNP [dm6]	C	A	3.146e^-4	0.78	INTRON ttv
3R	21119357	3R_21119357_SNP [dm3] 3R_25293635_SNP [dm6]	T	C	3.146e^-4	0.78	UTR_3_PRIME CG31102 UPSTREAM CG31098
3L	8929326	3L_8929326_SNP [dm3] 3L_8936226_SNP [dm6]	C	T	3.149e^-4	0.78	NON_SYNONYMOUS_CODING CG43783 DOWNSTREAM orb2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16209784	3L_16209784_SNP [dm3] 3L_16216684_SNP [dm6]	C	T	3.156e^-4	0.78	INTRON CG13073
3R	15972858	3R_15972858_SNP [dm3] 3R_20147136_SNP [dm6]	G	C	3.160e^-4	0.78	INTERGENIC
2R	13931825	2R_13931825_SNP [dm3] 2R_18044320_SNP [dm6]	A	G	3.171e^-4	0.78	SYNONYMOUS_CODING CG5770 UPSTREAM CG5773
3L	12449194	3L_12449194_SNP [dm3] 3L_12456094_SNP [dm6]	A	G	3.182e^-4	0.78	INTERGENIC
3L	9636613	3L_9636613_SNP [dm3] 3L_9643513_SNP [dm6]	C	A	3.183e^-4	0.78	SYNONYMOUS_CODING fry UPSTREAM CG33696
3R	8480553	3R_8480553_SNP [dm3] 3R_12654831_SNP [dm6]	T	C	3.184e^-4	0.78	UTR_5_PRIME CG6225 INTRON CG6225	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21156246	X_21156246_SNP [dm3] X_21285219_SNP [dm6]	A	C	3.186e^-4	0.78	UPSTREAM CG1494 INTERGENIC	transposable element FlyBase
2L	2861554	2L_2861554_SNP [dm3] 2L_2861554_SNP [dm6]	A	G	3.186e^-4	0.78	UPSTREAM CG2991 INTRON CG2991	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	15960063	2L_15960063_SNP [dm3] 2L_15960063_SNP [dm6]	G	A	3.189e^-4	0.78	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
3R	2016529	3R_2016529_SNP [dm3] 3R_6190807_SNP [dm6]	T	A	3.192e^-4	0.78	INTRON NPFR	TF binding site mE1_TFBS_inv
X	8344770	X_8344770_DEL [dm3] X_8450737_DEL [dm6]	TGTGTATT	T	3.194e^-4	0.78	INTRON org-1
2L	17709241	2L_17709241_SNP [dm3] 2L_17709241_SNP [dm6]	T	C	3.202e^-4	0.78	INTRON CadN
3R	15071410	3R_15071410_SNP [dm3] 3R_19245688_SNP [dm6]	A	C	3.209e^-4	0.78	INTRON unc79
X	5663929	X_5663929_INS [dm3] X_5769896_INS [dm6]	A	AG	3.210e^-4	0.78	INTRON CG42699 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	8372456	2R_8372456_SNP [dm3] 2R_12484951_SNP [dm6]	C	T	3.210e^-4	0.78	INTRON Dh44-R2
2R	16294366	2R_16294366_SNP [dm3] 2R_20406861_SNP [dm6]	T	C	3.215e^-4	0.78	INTERGENIC	TF binding site mE1_TFBS_inv
2R	15843801	2R_15843801_SNP [dm3] 2R_19956296_SNP [dm6]	A	G	3.224e^-4	0.78	SYNONYMOUS_CODING CG44623
3L	14489539	3L_14489539_INS [dm3] 3L_14496439_INS [dm6]	A	ATTTTCTA	3.225e^-4	0.78	INTRON bbg
3L	11838495	3L_11838495_INS [dm3] 3L_11845395_INS [dm6]	T	TTATA	3.225e^-4	0.78	INTERGENIC
2R	5445256	2R_5445256_SNP [dm3] 2R_9557751_SNP [dm6]	A	G	3.226e^-4	0.78	INTERGENIC
3R	25570751	3R_25570751_SNP [dm3] 3R_29745029_SNP [dm6]	A	C	3.228e^-4	0.78	START_GAINED CG7609 UTR_5_PRIME CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17727974	2R_17727974_SNP [dm3] 2R_21840469_SNP [dm6]	A	G	3.230e^-4	0.78	INTERGENIC
3R	2552488	3R_2552488_SNP [dm3] 3R_6726766_SNP [dm6]	G	A	3.236e^-4	0.78	INTRON pb	regulatory region FlyBase REDfly_CRMs
2L	648426	2L_648426_SNP [dm3] 2L_648426_SNP [dm6]	C	T	3.237e^-4	0.78	INTRON ds
3L	15693061	3L_15693061_SNP [dm3] 3L_15699961_SNP [dm6]	C	T	3.240e^-4	0.78	UPSTREAM comm2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	3079481	2R_3079481_SNP [dm3] 2R_7191976_SNP [dm6]	T	G	3.242e^-4	0.78	INTRON pk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11348019	3L_11348019_SNP [dm3] 3L_11354919_SNP [dm6]	G	A	3.243e^-4	0.78	INTERGENIC
2L	13229253	2L_13229253_DEL [dm3] 2L_13229253_DEL [dm6]	AAA	A	3.262e^-4	0.78	UPSTREAM CG16815 DOWNSTREAM CG16813 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	8366266	2R_8366266_SNP [dm3] 2R_12478761_SNP [dm6]	A	G	3.263e^-4	0.78	INTRON Dh44-R2
X	19572577	X_19572577_SNP [dm3] X_19678544_SNP [dm6]	G	A	3.269e^-4	0.78	SYNONYMOUS_CODING dome	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15614495	3L_15614495_SNP [dm3] 3L_15621395_SNP [dm6]	C	A	3.281e^-4	0.78	NON_SYNONYMOUS_CODING CG7372 INTRON comm3	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	13241445	3L_13241445_SNP [dm3] 3L_13248345_SNP [dm6]	T	C	3.287e^-4	0.78	SYNONYMOUS_CODING CG32119 INTRON caps
2R	8934064	2R_8934064_SNP [dm3] 2R_13046559_SNP [dm6]	C	A	3.288e^-4	0.78	UTR_3_PRIME CG13323 DOWNSTREAM CG13323
2L	16445796	2L_16445796_SNP [dm3] 2L_16445796_SNP [dm6]	C	T	3.296e^-4	0.78	SYNONYMOUS_CODING Idgf1 INTRON CG5888
3L	1352726	3L_1352726_SNP [dm3] 3L_1352726_SNP [dm6]	A	G	3.307e^-4	0.78	UTR_3_PRIME 312 DOWNSTREAM 312 INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2R	20938013	2R_20938013_SNP [dm3] 2R_25050490_SNP [dm6]	T	G	3.309e^-4	0.78	INTRON gsb-n	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6925158	3L_6925158_SNP [dm3] 3L_6932058_SNP [dm6]	A	T	3.310e^-4	0.78	UPSTREAM CG14820 & 1 other INTERGENIC
2R	13917272	2R_13917272_SNP [dm3] 2R_18029767_SNP [dm6]	C	T	3.312e^-4	0.78	INTERGENIC
2R	15903577	2R_15903577_SNP [dm3] 2R_20016072_SNP [dm6]	T	G	3.318e^-4	0.78	DOWNSTREAM CR44630 INTERGENIC
2R	5142016	2R_5142016_SNP [dm3] 2R_9254511_SNP [dm6]	T	C	3.319e^-4	0.78	SYNONYMOUS_CODING Pkn
3R	6299522	3R_6299522_SNP [dm3] 3R_10473800_SNP [dm6]	C	T	3.323e^-4	0.78	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19079237	2L_19079237_SNP [dm3] 2L_19079237_SNP [dm6]	C	T	3.328e^-4	0.78	UPSTREAM CG10700 DOWNSTREAM Lim3 INTERGENIC
2R	5226051	2R_5226051_SNP [dm3] 2R_9338546_SNP [dm6]	C	T	3.345e^-4	0.78	INTRON CG13954 & 1 other
2L	13229324	2L_13229324_SNP [dm3] 2L_13229324_SNP [dm6]	T	C	3.346e^-4	0.78	UPSTREAM CG16815 DOWNSTREAM CG16813 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	18531737	3L_18531737_SNP [dm3] 3L_18538637_SNP [dm6]	A	G	3.347e^-4	0.78	INTERGENIC
2L	8740696	2L_8740696_SNP [dm3] 2L_8740696_SNP [dm6]	A	T	3.347e^-4	0.78	UPSTREAM raw INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2L	4019340	2L_4019340_SNP [dm3] 2L_4019340_SNP [dm6]	A	T	3.350e^-4	0.78	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	6508912	2L_6508912_SNP [dm3] 2L_6508912_SNP [dm6]	T	A	3.351e^-4	0.78	UPSTREAM CR44775 INTRON CG31637	TF binding site BDTNP1_TFBS_hb
2R	8371767	2R_8371767_SNP [dm3] 2R_12484262_SNP [dm6]	T	A	3.354e^-4	0.78	INTRON Dh44-R2
2R	19069773	2R_19069773_SNP [dm3] 2R_23182250_SNP [dm6]	C	T	3.354e^-4	0.78	INTRON CG34371	TF binding site mE1_TFBS_cad
3L	9555353	3L_9555353_SNP [dm3] 3L_9562253_SNP [dm6]	T	A	3.360e^-4	0.78	INTRON CG42673
2L	8446397	2L_8446397_SNP [dm3] 2L_8446397_SNP [dm6]	A	C	3.364e^-4	0.78	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26 DOWNSTREAM CG31897
2L	18932869	2L_18932869_INS [dm3] 2L_18932869_INS [dm6]	T	TT	3.367e^-4	0.78	INTRON ssp3
2R	6796496	2R_6796496_SNP [dm3] 2R_10908991_SNP [dm6]	G	A	3.375e^-4	0.78	UPSTREAM Obp47a INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11404306	3L_11404306_SNP [dm3] 3L_11411206_SNP [dm6]	T	C	3.376e^-4	0.78	INTERGENIC
3L	9818657	3L_9818657_SNP [dm3] 3L_9825557_SNP [dm6]	A	G	3.377e^-4	0.78	SYNONYMOUS_CODING CG43897 INTRON CG43897	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5777926	2L_5777926_SNP [dm3] 2L_5777926_SNP [dm6]	G	A	3.380e^-4	0.78	INTRON CG9171	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	9817323	3R_9817323_SNP [dm3] 3R_13991601_SNP [dm6]	T	A	3.381e^-4	0.78	INTRON rdx
2L	18353658	2L_18353658_SNP [dm3] 2L_18353658_SNP [dm6]	A	T	3.386e^-4	0.78	INTRON Fas3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25779211	3R_25779211_SNP [dm3] 3R_29953489_SNP [dm6]	G	A	3.390e^-4	0.78	SPLICE_SITE_REGION TkR99D INTRON TkR99D
2L	10785598	2L_10785598_SNP [dm3] 2L_10785598_SNP [dm6]	A	T	3.390e^-4	0.78	INTRON CG31869 EXON CR44582
2R	6016574	2R_6016574_SNP [dm3] 2R_10129069_SNP [dm6]	G	A	3.392e^-4	0.78	INTRON gem	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	11756925	X_11756925_SNP [dm3] X_11862892_SNP [dm6]	T	C	3.395e^-4	0.78	INTRON ATP7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5474990	3L_5474990_SNP [dm3] 3L_5481890_SNP [dm6]	T	A	3.401e^-4	0.78	NON_SYNONYMOUS_CODING CG4835	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22226718	3R_22226718_SNP [dm3] 3R_26400996_SNP [dm6]	A	T	3.408e^-4	0.78	DOWNSTREAM ppk15 INTERGENIC
3R	20608114	3R_20608114_SNP [dm3] 3R_24782392_SNP [dm6]	G	A	3.409e^-4	0.78	SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	14049653	2R_14049653_SNP [dm3] 2R_18162148_SNP [dm6]	G	A	3.410e^-4	0.78	INTRON CG10915
3L	10606729	3L_10606729_SNP [dm3] 3L_10613629_SNP [dm6]	T	C	3.412e^-4	0.78	INTERGENIC
3R	21341392	3R_21341392_SNP [dm3] 3R_25515670_SNP [dm6]	T	A	3.421e^-4	0.78	UPSTREAM msi INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	8450997	2L_8450997_SNP [dm3] 2L_8450997_SNP [dm6]	T	A	3.427e^-4	0.78	UTR_5_PRIME fu12
2R	15180312	2R_15180312_SNP [dm3] 2R_19292807_SNP [dm6]	A	T	3.430e^-4	0.78	UTR_5_PRIME Tab2 UPSTREAM mip40	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9438549	2L_9438549_SNP [dm3] 2L_9438549_SNP [dm6]	C	T	3.432e^-4	0.78	INTRON numb	TF binding site BDTNP1_TFBS_dl
3R	5123292	3R_5123292_SNP [dm3] 3R_9297570_SNP [dm6]	G	A	3.435e^-4	0.78	INTRON CG8861
2L	8450506	2L_8450506_SNP [dm3] 2L_8450506_SNP [dm6]	T	G	3.443e^-4	0.78	SYNONYMOUS_CODING fu12 UPSTREAM U26	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8450632	2L_8450632_SNP [dm3] 2L_8450632_SNP [dm6]	C	T	3.443e^-4	0.78	SYNONYMOUS_CODING fu12	TF binding site mE1_TFBS_HSA
3L	8695957	3L_8695957_DEL [dm3] 3L_8702857_DEL [dm6]	TAT	T	3.445e^-4	0.78	INTERGENIC
3R	7124117	3R_7124117_SNP [dm3] 3R_11298395_SNP [dm6]	T	A	3.454e^-4	0.78	INTRON CR31386	TF binding site mE1_TFBS_chinmo
2R	9146968	2R_9146968_SNP [dm3] 2R_13259463_SNP [dm6]	T	C	3.458e^-4	0.78	UPSTREAM CG42319 DOWNSTREAM CG10799 INTERGENIC
3L	9397213	3L_9397213_SNP [dm3] 3L_9404113_SNP [dm6]	G	C	3.459e^-4	0.78	UPSTREAM Cpr67B INTERGENIC
2L	13884829	2L_13884829_SNP [dm3] 2L_13884829_SNP [dm6]	A	C	3.462e^-4	0.78	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	20602541	3R_20602541_SNP [dm3] 3R_24776819_SNP [dm6]	G	A	3.470e^-4	0.781	INTRON CG42331
3L	14686244	3L_14686244_SNP [dm3] 3L_14693144_SNP [dm6]	C	T	3.473e^-4	0.781	INTRON ome
2R	10417824	2R_10417824_SNP [dm3] 2R_14530319_SNP [dm6]	A	G	3.485e^-4	0.782	INTRON ttv
2L	13875526	2L_13875526_SNP [dm3] 2L_13875526_SNP [dm6]	C	T	3.494e^-4	0.782	INTRON CenG1A
2R	3241518	2R_3241518_SNP [dm3] 2R_7354013_SNP [dm6]	T	C	3.497e^-4	0.782	INTRON Dscam1
X	5208379	X_5208379_SNP [dm3] X_5314346_SNP [dm6]	T	A	3.500e^-4	0.782	NON_SYNONYMOUS_CODING CG4198 DOWNSTREAM CG15930	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15637084	3L_15637084_SNP [dm3] 3L_15643984_SNP [dm6]	A	C	3.507e^-4	0.782	INTRON comm3
3L	4426085	3L_4426085_SNP [dm3] 3L_4426085_SNP [dm6]	T	C	3.508e^-4	0.782	SYNONYMOUS_CODING CG15020
X	11409493	X_11409493_SNP [dm3] X_11515460_SNP [dm6]	A	T	3.520e^-4	0.782	INTRON Drak	TF binding site mE1_TFBS_Kr
2R	13810039	2R_13810039_SNP [dm3] 2R_17922534_SNP [dm6]	G	A	3.524e^-4	0.782	INTRON Elk
3L	14815465	3L_14815465_SNP [dm3] 3L_14822365_SNP [dm6]	G	A	3.524e^-4	0.782	INTRON CG17839
3R	19232536	3R_19232536_SNP [dm3] 3R_23406814_SNP [dm6]	T	A	3.525e^-4	0.782	SYNONYMOUS_CODING Ir94e	TF binding site mE1_TFBS_HSA
2L	17324045	2L_17324045_SNP [dm3] 2L_17324045_SNP [dm6]	T	C	3.532e^-4	0.782	INTERGENIC
2R	20161833	2R_20161833_SNP [dm3] 2R_24274310_SNP [dm6]	C	T	3.533e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	12856395	3L_12856395_SNP [dm3] 3L_12863295_SNP [dm6]	A	T	3.536e^-4	0.782	UPSTREAM CG10943 INTERGENIC
3L	4709828	3L_4709828_SNP [dm3] 3L_4709828_SNP [dm6]	C	T	3.539e^-4	0.782	NON_SYNONYMOUS_CODING CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9147237	2R_9147237_SNP [dm3] 2R_13259732_SNP [dm6]	C	A	3.547e^-4	0.783	UPSTREAM CG42319 INTERGENIC
2R	9147038	2R_9147038_SNP [dm3] 2R_13259533_SNP [dm6]	G	A	3.548e^-4	0.783	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2L	1136590	2L_1136590_SNP [dm3] 2L_1136590_SNP [dm6]	C	G	3.558e^-4	0.783	INTRON CG4577
2L	6123043	2L_6123043_SNP [dm3] 2L_6123043_SNP [dm6]	C	T	3.572e^-4	0.783	SYNONYMOUS_CODING stai
3L	15623994	3L_15623994_SNP [dm3] 3L_15630894_SNP [dm6]	C	T	3.575e^-4	0.783	INTRON comm3
3R	23141757	3R_23141757_SNP [dm3] 3R_27316035_SNP [dm6]	T	A	3.577e^-4	0.783	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	4114210	3R_4114210_SNP [dm3] 3R_8288488_SNP [dm6]	T	C	3.577e^-4	0.783	SYNONYMOUS_CODING CG11671 DOWNSTREAM CR44318 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2645044	3L_2645044_SNP [dm3] 3L_2645044_SNP [dm6]	T	G	3.580e^-4	0.783	UPSTREAM CG1143 INTERGENIC
3R	2705648	3R_2705648_SNP [dm3] 3R_6879926_SNP [dm6]	G	T	3.582e^-4	0.783	INTRON CR44931	regulatory region FlyBase REDfly_CRMs
2L	19522029	2L_19522029_SNP [dm3] 2L_19522029_SNP [dm6]	C	T	3.588e^-4	0.783	SYNONYMOUS_CODING CG10132	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5251218	X_5251218_SNP [dm3] X_5357185_SNP [dm6]	A	T	3.591e^-4	0.783	INTRON SK
2L	14748825	2L_14748825_SNP [dm3] 2L_14748825_SNP [dm6]	C	T	3.591e^-4	0.783	INTERGENIC
2L	5851649	2L_5851649_SNP [dm3] 2L_5851649_SNP [dm6]	G	A	3.594e^-4	0.783	SYNONYMOUS_CODING TrissinR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	15596933	3L_15596933_INS [dm3] 3L_15603833_INS [dm6]	C	CAC	3.601e^-4	0.783	DOWNSTREAM RhoGAP71E INTRON RhoGAP71E
2L	8664729	2L_8664729_SNP [dm3] 2L_8664729_SNP [dm6]	C	A	3.617e^-4	0.786	INTRON Sema-1a
X	17952280	X_17952280_SNP [dm3] X_18058247_SNP [dm6]	A	T	3.621e^-4	0.786	INTRON Sh
2R	9343428	2R_9343428_SNP [dm3] 2R_13455923_SNP [dm6]	A	G	3.626e^-4	0.786	SPLICE_SITE_REGION arr INTRON arr
2R	17464144	2R_17464144_DEL [dm3] 2R_21576639_DEL [dm6]	TT	T	3.637e^-4	0.787	UPSTREAM CG10440 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	2081472	2L_2081472_SNP [dm3] 2L_2081472_SNP [dm6]	G	T	3.663e^-4	0.791	UPSTREAM CR44808 DOWNSTREAM CG12674 INTRON dpr3
2R	21127840	2R_21127840_INS [dm3] 2R_25240317_INS [dm6]	T	TTATTTTACAGGTAACAGGT...	3.664e^-4	0.791	INTRON CG9380
3R	6714328	3R_6714328_DEL [dm3] 3R_10888606_DEL [dm6]	GTGTG	G	3.665e^-4	0.791	INTRON Leash & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	19835455	2L_19835455_SNP [dm3] 2L_19835455_SNP [dm6]	A	C	3.671e^-4	0.791	INTRON sick
X	6094703	X_6094703_SNP [dm3] X_6200670_SNP [dm6]	T	C	3.680e^-4	0.792	SYNONYMOUS_CODING vanin-like UPSTREAM CG43090
2L	4624701	2L_4624701_SNP [dm3] 2L_4624701_SNP [dm6]	C	T	3.683e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4006853	3L_4006853_SNP [dm3] 3L_4006853_SNP [dm6]	A	G	3.694e^-4	0.793	DOWNSTREAM CG14985 INTERGENIC
3L	4025686	3L_4025686_SNP [dm3] 3L_4025686_SNP [dm6]	C	T	3.700e^-4	0.793	UTR_5_PRIME CG11594 UPSTREAM CG11594 INTRON CG11594
3L	7470530	3L_7470530_SNP [dm3] 3L_7477430_SNP [dm6]	T	C	3.704e^-4	0.793	INTERGENIC
2L	15960006	2L_15960006_SNP [dm3] 2L_15960006_SNP [dm6]	T	C	3.708e^-4	0.793	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
3R	4349280	3R_4349280_SNP [dm3] 3R_8523558_SNP [dm6]	T	C	3.722e^-4	0.794	UPSTREAM CG31259 DOWNSTREAM CG31454 INTERGENIC
X	14067509	X_14067509_SNP [dm3] X_14173476_SNP [dm6]	A	T	3.730e^-4	0.794	UPSTREAM betaNACtes1 INTERGENIC
3L	602453	3L_602453_SNP [dm3] 3L_602453_SNP [dm6]	T	C	3.732e^-4	0.794	INTRON CG13893
X	4475044	X_4475044_SNP [dm3] X_4581011_SNP [dm6]	G	A	3.738e^-4	0.794	INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	148969	2R_148969_SNP [dm3] 2R_4261464_SNP [dm6]	C	A	3.738e^-4	0.794	INTERGENIC
2L	3997257	2L_3997257_INS [dm3] 2L_3997257_INS [dm6]	T	TGA	3.739e^-4	0.794	INTERGENIC
3L	18646231	3L_18646231_SNP [dm3] 3L_18653131_SNP [dm6]	C	T	3.739e^-4	0.794	INTRON MYPT-75D
2L	16578559	2L_16578559_SNP [dm3] 2L_16578559_SNP [dm6]	A	C	3.753e^-4	0.794	INTRON CG42389
2R	9356682	2R_9356682_SNP [dm3] 2R_13469177_SNP [dm6]	A	C	3.754e^-4	0.794	INTRON arr	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu
2L	17334106	2L_17334106_SNP [dm3] 2L_17334106_SNP [dm6]	T	C	3.760e^-4	0.794	INTERGENIC
3L	11617938	3L_11617938_SNP [dm3] 3L_11624838_SNP [dm6]	G	A	3.765e^-4	0.794	UPSTREAM CG6084 INTRON CG6083
2R	5980518	2R_5980518_SNP [dm3] 2R_10093013_SNP [dm6]	A	G	3.767e^-4	0.794	INTRON CG2269
3L	5475582	3L_5475582_SNP [dm3] 3L_5482482_SNP [dm6]	T	A	3.778e^-4	0.794	NON_SYNONYMOUS_CODING CG4835
2R	16565617	2R_16565617_SNP [dm3] 2R_20678112_SNP [dm6]	C	A	3.780e^-4	0.794	INTERGENIC
2R	13931784	2R_13931784_SNP [dm3] 2R_18044279_SNP [dm6]	C	T	3.783e^-4	0.794	UTR_3_PRIME CG5770 UPSTREAM CG5773
X	4402453	X_4402453_SNP [dm3] X_4508420_SNP [dm6]	C	A	3.785e^-4	0.794	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	16619019	2L_16619019_SNP [dm3] 2L_16619019_SNP [dm6]	T	A	3.789e^-4	0.794	INTRON CG42389	TF binding site BDTNP1_TFBS_dl
2L	11654717	2L_11654717_SNP [dm3] 2L_11654717_SNP [dm6]	G	A	3.794e^-4	0.794	DOWNSTREAM CG4983 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17935660	X_17935660_SNP [dm3] X_18041627_SNP [dm6]	T	C	3.798e^-4	0.794	INTRON Sh
X	15419064	X_15419064_SNP [dm3] X_15525031_SNP [dm6]	C	T	3.810e^-4	0.794	INTRON Ac13E
3L	9377453	3L_9377453_SNP [dm3] 3L_9384353_SNP [dm6]	T	C	3.818e^-4	0.794	SYNONYMOUS_CODING Hsp27	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	17029297	X_17029297_SNP [dm3] X_17135264_SNP [dm6]	G	A	3.821e^-4	0.794	UTR_3_PRIME CG5004 DOWNSTREAM mei-218
X	14908012	X_14908012_SNP [dm3] X_15013979_SNP [dm6]	G	A	3.824e^-4	0.794	SPLICE_SITE_REGION hiw INTRON hiw	TF binding site mE1_TFBS_chinmo
2R	10345644	2R_10345644_SNP [dm3] 2R_14458139_SNP [dm6]	G	T	3.831e^-4	0.794	UPSTREAM Oaz INTRON Oaz	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	14325898	3L_14325898_SNP [dm3] 3L_14332798_SNP [dm6]	A	T	3.831e^-4	0.794	INTRON fz
2R	18818209	2R_18818209_SNP [dm3] 2R_22930686_SNP [dm6]	C	A	3.832e^-4	0.794	NON_SYNONYMOUS_CODING CG42678 DOWNSTREAM CG42678 INTRON CG42678	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14222122	2L_14222122_SNP [dm3] 2L_14222122_SNP [dm6]	A	C	3.843e^-4	0.794	INTRON Dyrk2
X	17911545	X_17911545_SNP [dm3] X_18017512_SNP [dm6]	T	C	3.845e^-4	0.794	INTRON Sh
3R	21341350	3R_21341350_SNP [dm3] 3R_25515628_SNP [dm6]	G	T	3.846e^-4	0.794	UPSTREAM msi INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15589885	3R_15589885_SNP [dm3] 3R_19764163_SNP [dm6]	A	C	3.850e^-4	0.794	INTRON GluClalpha
X	10517805	X_10517805_SNP [dm3] X_10623772_SNP [dm6]	G	C	3.860e^-4	0.794	UTR_3_PRIME CG9806 UPSTREAM Rab9Db
2R	14095629	2R_14095629_SNP [dm3] 2R_18208124_SNP [dm6]	T	C	3.864e^-4	0.794	NON_SYNONYMOUS_CODING CG30114
2R	10970044	2R_10970044_SNP [dm3] 2R_15082539_SNP [dm6]	A	G	3.868e^-4	0.794	INTERGENIC
2R	12643360	2R_12643360_SNP [dm3] 2R_16755855_SNP [dm6]	G	A	3.870e^-4	0.794	DOWNSTREAM CG34189 & 1 other INTRON unc-104	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6927098	3L_6927098_SNP [dm3] 3L_6933998_SNP [dm6]	A	T	3.884e^-4	0.794	INTRON CG14820
2L	3825047	2L_3825047_SNP [dm3] 2L_3825047_SNP [dm6]	T	A	3.891e^-4	0.794	UPSTREAM slp1 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	17891665	3L_17891665_SNP [dm3] 3L_17898565_SNP [dm6]	G	A	3.904e^-4	0.794	DOWNSTREAM Prestin INTERGENIC
X	20658080	X_20658080_SNP [dm3] X_20787053_SNP [dm6]	C	A	3.906e^-4	0.794	INTRON shakB
2R	19480338	2R_19480338_SNP [dm3] 2R_23592815_SNP [dm6]	C	T	3.907e^-4	0.794	INTRON apt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8885320	3L_8885320_SNP [dm3] 3L_8892220_SNP [dm6]	T	G	3.909e^-4	0.794	SPLICE_SITE_REGION Mcm7 INTRON Mcm7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	10200495	3R_10200495_SNP [dm3] 3R_14374773_SNP [dm6]	C	T	3.911e^-4	0.794	DOWNSTREAM CR44943 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	3381760	X_3381760_SNP [dm3] X_3487727_SNP [dm6]	G	A	3.913e^-4	0.794	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_sens
2L	5160237	2L_5160237_SNP [dm3] 2L_5160237_SNP [dm6]	C	G	3.922e^-4	0.794	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4533877	3L_4533877_SNP [dm3] 3L_4533877_SNP [dm6]	A	G	3.926e^-4	0.794	INTRON CG11353
2R	10368009	2R_10368009_SNP [dm3] 2R_14480504_SNP [dm6]	C	T	3.932e^-4	0.794	UPSTREAM L INTERGENIC	TF binding site mE1_TFBS_bab1
2L	10218519	2L_10218519_SNP [dm3] 2L_10218519_SNP [dm6]	C	G	3.932e^-4	0.794	INTRON Npc1a	TF binding site mE1_TFBS_HSA
3R	12958523	3R_12958523_SNP [dm3] 3R_17132801_SNP [dm6]	G	A	3.937e^-4	0.794	SYNONYMOUS_CODING CG31266 UPSTREAM CG4053	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12310459	3L_12310459_SNP [dm3] 3L_12317359_SNP [dm6]	G	A	3.940e^-4	0.794	INTERGENIC
3L	12310460	3L_12310460_SNP [dm3] 3L_12317360_SNP [dm6]	A	G	3.940e^-4	0.794	INTERGENIC
X	14843656	X_14843656_SNP [dm3] X_14949623_SNP [dm6]	A	T	3.940e^-4	0.794	INTRON pdgy
3R	13570318	3R_13570318_SNP [dm3] 3R_17744596_SNP [dm6]	C	A	3.949e^-4	0.794	INTRON TyrRII	TF binding site mE1_TFBS_cad
3L	10702392	3L_10702392_SNP [dm3] 3L_10709292_SNP [dm6]	G	T	3.950e^-4	0.794	INTERGENIC
X	17952293	X_17952293_SNP [dm3] X_18058260_SNP [dm6]	A	G	3.954e^-4	0.794	INTRON Sh
X	20443947	X_20443947_SNP [dm3] X_20572920_SNP [dm6]	C	T	3.954e^-4	0.794	INTERGENIC
3R	12897467	3R_12897467_SNP [dm3] 3R_17071745_SNP [dm6]	C	T	3.962e^-4	0.794	SYNONYMOUS_CODING Ns1 UPSTREAM mRpS11	TF binding site mE1_TFBS_HSA
2R	6588137	2R_6588137_SNP [dm3] 2R_10700632_SNP [dm6]	C	T	3.966e^-4	0.794	INTRON stan
3L	1564511	3L_1564511_SNP [dm3] 3L_1564511_SNP [dm6]	A	G	3.974e^-4	0.794	UPSTREAM CG12003 INTRON CG7879
3L	15488911	3L_15488911_SNP [dm3] 3L_15495811_SNP [dm6]	A	T	3.989e^-4	0.794	UPSTREAM CG12355 & 1 other INTERGENIC
2L	3156919	2L_3156919_SNP [dm3] 2L_3156919_SNP [dm6]	C	A	3.994e^-4	0.794	INTRON Mad
2R	3079950	2R_3079950_SNP [dm3] 2R_7192445_SNP [dm6]	T	G	4.000e^-4	0.794	INTRON pk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	6511556	2L_6511556_SNP [dm3] 2L_6511556_SNP [dm6]	T	C	4.000e^-4	0.794	INTRON CG31637
3R	4391378	3R_4391378_SNP [dm3] 3R_8565656_SNP [dm6]	G	C	4.005e^-4	0.794	NON_SYNONYMOUS_CODING Cenp-C	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3L	13310278	3L_13310278_SNP [dm3] 3L_13317178_SNP [dm6]	C	G	4.005e^-4	0.794	INTERGENIC
2R	4505288	2R_4505288_SNP [dm3] 2R_8617783_SNP [dm6]	G	T	4.008e^-4	0.794	SYNONYMOUS_CODING Cirl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2645041	3L_2645041_SNP [dm3] 3L_2645041_SNP [dm6]	G	T	4.014e^-4	0.794	UPSTREAM CG1143 INTERGENIC
2L	17782570	2L_17782570_SNP [dm3] 2L_17782570_SNP [dm6]	C	T	4.015e^-4	0.794	INTERGENIC
3L	12998839	3L_12998839_SNP [dm3] 3L_13005739_SNP [dm6]	C	T	4.020e^-4	0.794	INTERGENIC
2L	18885261	2L_18885261_SNP [dm3] 2L_18885261_SNP [dm6]	C	G	4.026e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	18025509	3L_18025509_SNP [dm3] 3L_18032409_SNP [dm6]	C	T	4.031e^-4	0.794	INTRON Eip75B
3L	1912355	3L_1912355_SNP [dm3] 3L_1912355_SNP [dm6]	A	C	4.031e^-4	0.794	INTERGENIC
3R	15812072	3R_15812072_SNP [dm3] 3R_19986350_SNP [dm6]	G	A	4.032e^-4	0.794	INTRON Hs6st
2R	11052136	2R_11052136_SNP [dm3] 2R_15164631_SNP [dm6]	C	T	4.035e^-4	0.794	UTR_5_PRIME igl UPSTREAM igl INTRON igl
2R	18278806	2R_18278806_SNP [dm3] 2R_22391301_SNP [dm6]	A	G	4.039e^-4	0.794	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19819855	2L_19819855_SNP [dm3] 2L_19819855_SNP [dm6]	G	A	4.040e^-4	0.794	INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	13922099	3R_13922099_SNP [dm3] 3R_18096377_SNP [dm6]	G	C	4.042e^-4	0.794	SYNONYMOUS_CODING sr
2L	13605394	2L_13605394_SNP [dm3] 2L_13605394_SNP [dm6]	A	G	4.045e^-4	0.794	INTRON kuz
3R	4354693	3R_4354693_SNP [dm3] 3R_8528971_SNP [dm6]	C	T	4.048e^-4	0.794	UPSTREAM CG11741 INTERGENIC	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	4106375	2L_4106375_SNP [dm3] 2L_4106375_SNP [dm6]	A	C	4.055e^-4	0.794	INTRON ed
2L	4106377	2L_4106377_SNP [dm3] 2L_4106377_SNP [dm6]	T	A	4.055e^-4	0.794	INTRON ed
3L	5646490	3L_5646490_SNP [dm3] 3L_5653390_SNP [dm6]	G	T	4.056e^-4	0.794	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
X	14227406	X_14227406_SNP [dm3] X_14333373_SNP [dm6]	T	C	4.059e^-4	0.794	INTRON dpr8
2L	696649	2L_696649_SNP [dm3] 2L_696649_SNP [dm6]	T	A	4.074e^-4	0.794	INTRON ds	TF binding site mE1_TFBS_Trl
3L	20721773	3L_20721773_SNP [dm3] 3L_20728673_SNP [dm6]	T	C	4.079e^-4	0.794	DOWNSTREAM CR43945 INTERGENIC
3L	16209787	3L_16209787_SNP [dm3] 3L_16216687_SNP [dm6]	G	A	4.082e^-4	0.794	INTRON CG13073
2R	11051979	2R_11051979_SNP [dm3] 2R_15164474_SNP [dm6]	C	T	4.083e^-4	0.794	UPSTREAM igl INTRON igl
X	9639696	X_9639696_SNP [dm3] X_9745663_SNP [dm6]	G	A	4.086e^-4	0.794	INTRON Sp1
3R	22743519	3R_22743519_SNP [dm3] 3R_26917797_SNP [dm6]	T	G	4.088e^-4	0.794	INTRON sda
3L	11020856	3L_11020856_DEL [dm3] 3L_11027756_DEL [dm6]	TA	T	4.091e^-4	0.794	DOWNSTREAM CG32079 INTRON CG32081
2L	19478941	2L_19478941_SNP [dm3] 2L_19478941_SNP [dm6]	A	G	4.097e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	19478959	2L_19478959_SNP [dm3] 2L_19478959_SNP [dm6]	C	G	4.097e^-4	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	19830668	2L_19830668_SNP [dm3] 2L_19830668_SNP [dm6]	C	G	4.101e^-4	0.794	INTRON sick
2R	4956241	2R_4956241_SNP [dm3] 2R_9068736_SNP [dm6]	T	G	4.106e^-4	0.794	UPSTREAM ana INTRON ana
3R	25779128	3R_25779128_SNP [dm3] 3R_29953406_SNP [dm6]	G	A	4.113e^-4	0.794	SYNONYMOUS_CODING TkR99D
X	17950439	X_17950439_SNP [dm3] X_18056406_SNP [dm6]	G	T	4.113e^-4	0.794	INTRON Sh
X	17935519	X_17935519_SNP [dm3] X_18041486_SNP [dm6]	T	A	4.114e^-4	0.794	INTRON Sh
2L	606477	2L_606477_SNP [dm3] 2L_606477_SNP [dm6]	A	G	4.121e^-4	0.794	DOWNSTREAM CR43648 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3815017	2L_3815017_SNP [dm3] 2L_3815017_SNP [dm6]	T	A	4.123e^-4	0.794	UPSTREAM CR44076 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5798104	3L_5798104_SNP [dm3] 3L_5805004_SNP [dm6]	T	C	4.127e^-4	0.794	SYNONYMOUS_CODING CG42272 INTRON S6k	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	1564487	3L_1564487_SNP [dm3] 3L_1564487_SNP [dm6]	C	A	4.132e^-4	0.794	UPSTREAM CG12003 INTRON CG7879
3L	5646496	3L_5646496_SNP [dm3] 3L_5653396_SNP [dm6]	A	T	4.139e^-4	0.795	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
X	9844067	X_9844067_SNP [dm3] X_9950034_SNP [dm6]	A	G	4.143e^-4	0.795	INTERGENIC
2L	21785498	2L_21785498_SNP [dm3] 2L_21785498_SNP [dm6]	A	T	4.157e^-4	0.795	INTRON CG31612
3L	14372397	3L_14372397_INS [dm3] 3L_14379297_INS [dm6]	A	ACATA	4.168e^-4	0.795	INTERGENIC
3L	18563584	3L_18563584_SNP [dm3] 3L_18570484_SNP [dm6]	A	G	4.170e^-4	0.795	INTRON AstC-R1
3L	4647084	3L_4647084_INS [dm3] 3L_4647084_INS [dm6]	T	TC	4.172e^-4	0.795	INTRON axo
2R	14546695	2R_14546695_SNP [dm3] 2R_18659190_SNP [dm6]	A	T	4.173e^-4	0.795	SYNONYMOUS_CODING Gint3 UTR_3_PRIME CG42306 UPSTREAM SP2637	TF binding site mE1_TFBS_sens
3L	14816170	3L_14816170_SNP [dm3] 3L_14823070_SNP [dm6]	A	T	4.174e^-4	0.795	INTRON CG17839
X	20218600	X_20218600_SNP [dm3] X_20347573_SNP [dm6]	T	A	4.177e^-4	0.795	INTERGENIC
3R	17684839	3R_17684839_SNP [dm3] 3R_21859117_SNP [dm6]	G	A	4.180e^-4	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19387802	2R_19387802_SNP [dm3] 2R_23500279_SNP [dm6]	A	T	4.187e^-4	0.796	NON_SYNONYMOUS_CODING CG13558	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	20334302	2R_20334302_SNP [dm3] 2R_24446779_SNP [dm6]	T	C	4.194e^-4	0.797	UTR_3_PRIME CG3483	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14213283	3L_14213283_SNP [dm3] 3L_14220183_SNP [dm6]	G	C	4.213e^-4	0.799	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19391197	2R_19391197_SNP [dm3] 2R_23503674_SNP [dm6]	A	G	4.221e^-4	0.799	SYNONYMOUS_STOP CG13559
2R	19504067	2R_19504067_SNP [dm3] 2R_23616544_SNP [dm6]	T	A	4.221e^-4	0.799	NON_SYNONYMOUS_CODING CG17664
3R	4415773	3R_4415773_SNP [dm3] 3R_8590051_SNP [dm6]	G	T	4.229e^-4	0.8	INTRON 5-HT2B	TF binding site mE1_TFBS_cad
X	17959423	X_17959423_SNP [dm3] X_18065390_SNP [dm6]	A	G	4.233e^-4	0.8	INTRON Dhc16F
2R	16332633	2R_16332633_SNP [dm3] 2R_20445128_SNP [dm6]	A	G	4.235e^-4	0.8	INTRON CG12484
2R	119371	2R_119371_SNP [dm3] 2R_4231866_SNP [dm6]	G	C	4.253e^-4	0.801	INTERGENIC
3L	14561388	3L_14561388_SNP [dm3] 3L_14568288_SNP [dm6]	A	G	4.263e^-4	0.801	DOWNSTREAM CG42758 INTERGENIC
2L	2415341	2L_2415341_SNP [dm3] 2L_2415341_SNP [dm6]	T	C	4.265e^-4	0.801	UPSTREAM CG18641 DOWNSTREAM CG31948 INTERGENIC
2L	7718985	2L_7718985_SNP [dm3] 2L_7718985_SNP [dm6]	T	A	4.267e^-4	0.801	SYNONYMOUS_CODING CG13793 DOWNSTREAM CG13794
2L	5774651	2L_5774651_SNP [dm3] 2L_5774651_SNP [dm6]	C	T	4.270e^-4	0.801	INTRON CG9171	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16146269	X_16146269_SNP [dm3] X_16252236_SNP [dm6]	T	C	4.270e^-4	0.801	INTERGENIC
2R	254918	2R_254918_SNP [dm3] 2R_4367413_SNP [dm6]	C	T	4.279e^-4	0.802	INTRON Gprk1

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.769e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2300 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	21160839	X_21160839_SNP [dm3] X_21289812_SNP [dm6]	T	C	9.320e^-9	0.011	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	1.206e^-8	0.011	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21160844	X_21160844_SNP [dm3] X_21289817_SNP [dm6]	G	C	2.924e^-8	0.018	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9147422	2R_9147422_SNP [dm3] 2R_13259917_SNP [dm6]	A	T	2.191e^-7	0.103	UPSTREAM CG42319 INTERGENIC
2R	9147435	2R_9147435_SNP [dm3] 2R_13259930_SNP [dm6]	T	A	4.569e^-7	0.171	UPSTREAM CG42319 INTERGENIC
2R	9147438	2R_9147438_SNP [dm3] 2R_13259933_SNP [dm6]	G	A	6.964e^-7	0.218	UPSTREAM CG42319 INTERGENIC
2R	9147482	2R_9147482_SNP [dm3] 2R_13259977_SNP [dm6]	A	G	9.168e^-7	0.246	UPSTREAM CG42319 INTERGENIC
2R	9147218	2R_9147218_SNP [dm3] 2R_13259713_SNP [dm6]	T	A	1.245e^-6	0.292	UPSTREAM CG42319 INTERGENIC
3L	11276715	3L_11276715_SNP [dm3] 3L_11283615_SNP [dm6]	A	C	2.429e^-6	0.406	INTERGENIC
3L	11276725	3L_11276725_SNP [dm3] 3L_11283625_SNP [dm6]	A	T	2.429e^-6	0.406	INTERGENIC
3L	4557102	3L_4557102_SNP [dm3] 3L_4557102_SNP [dm6]	A	G	2.483e^-6	0.406	UPSTREAM CG42540 INTRON CG42540
2R	9147340	2R_9147340_DEL [dm3] 2R_13259835_DEL [dm6]	AA	C	2.599e^-6	0.406	UPSTREAM CG42319 INTERGENIC
X	2926734	X_2926734_SNP [dm3] X_3032701_SNP [dm6]	C	A	3.148e^-6	0.454	INTRON kirre
2R	9147337	2R_9147337_SNP [dm3] 2R_13259832_SNP [dm6]	G	C	3.580e^-6	0.479	UPSTREAM CG42319 INTERGENIC
X	2926031	X_2926031_SNP [dm3] X_3031998_SNP [dm6]	C	A	4.352e^-6	0.525	INTRON kirre
3L	12450024	3L_12450024_SNP [dm3] 3L_12456924_SNP [dm6]	G	A	4.640e^-6	0.525	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	13570329	3R_13570329_SNP [dm3] 3R_17744607_SNP [dm6]	A	C	5.092e^-6	0.525	INTRON TyrRII	TF binding site mE1_TFBS_cad
2L	376777	2L_376777_SNP [dm3] 2L_376777_SNP [dm6]	G	A	5.757e^-6	0.525	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	6100199	3L_6100199_SNP [dm3] 3L_6107099_SNP [dm6]	C	T	6.124e^-6	0.525	INTRON Ets65A	TF binding site mE1_TFBS_cad
2L	373751	2L_373751_SNP [dm3] 2L_373751_SNP [dm6]	G	A	6.587e^-6	0.525	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	7620847	X_7620847_SNP [dm3] X_7726814_SNP [dm6]	T	C	7.199e^-6	0.525	SYNONYMOUS_CODING NELF-B DOWNSTREAM Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	12971257	3R_12971257_SNP [dm3] 3R_17145535_SNP [dm6]	A	C	7.244e^-6	0.525	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3R	12971260	3R_12971260_DEL [dm3] 3R_17145538_DEL [dm6]	AGGTAAGCATCCTA...	G	7.244e^-6	0.525	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3L	9661340	3L_9661340_SNP [dm3] 3L_9668240_SNP [dm6]	C	G	7.300e^-6	0.525	INTRON fry	TF binding site mE1_TFBS_cad
2R	9147036	2R_9147036_SNP [dm3] 2R_13259531_SNP [dm6]	A	T	7.756e^-6	0.525	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3L	8391972	3L_8391972_SNP [dm3] 3L_8398872_SNP [dm6]	A	T	7.818e^-6	0.525	INTRON CG7120
X	10765528	X_10765528_SNP [dm3] X_10871495_SNP [dm6]	A	G	7.903e^-6	0.525	DOWNSTREAM CG2157 & 1 other INTRON CG1637	TF binding site mE1_TFBS_sens
2R	19537420	2R_19537420_SNP [dm3] 2R_23649897_SNP [dm6]	A	T	8.078e^-6	0.525	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11401932	2L_11401932_SNP [dm3] 2L_11401932_SNP [dm6]	T	G	8.115e^-6	0.525	INTERGENIC	regulatory region REDfly_CRMs
3R	12898355	3R_12898355_SNP [dm3] 3R_17072633_SNP [dm6]	A	G	9.549e^-6	0.59	UTR_5_PRIME Ns1 UPSTREAM mRpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3241206	2R_3241206_DEL [dm3] 2R_7353701_DEL [dm6]	GTACA	G	9.754e^-6	0.59	INTRON Dscam1
3L	11276731	3L_11276731_SNP [dm3] 3L_11283631_SNP [dm6]	A	G	1.089e^-5	0.638	INTERGENIC
X	7617605	X_7617605_SNP [dm3] X_7723572_SNP [dm6]	A	T	1.211e^-5	0.688	NON_SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	7617541	X_7617541_SNP [dm3] X_7723508_SNP [dm6]	C	A	1.332e^-5	0.717	SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	6100247	3L_6100247_SNP [dm3] 3L_6107147_SNP [dm6]	C	T	1.359e^-5	0.717	INTRON Ets65A	TF binding site mE1_TFBS_cad
3R	13570405	3R_13570405_SNP [dm3] 3R_17744683_SNP [dm6]	A	C	1.376e^-5	0.717	INTRON TyrRII
3L	8391974	3L_8391974_SNP [dm3] 3L_8398874_SNP [dm6]	G	A	1.482e^-5	0.722	INTRON CG7120
3L	4817173	3L_4817173_SNP [dm3] 3L_4817173_SNP [dm6]	G	A	1.490e^-5	0.722	SYNONYMOUS_CODING Dhc64C
2R	9147190	2R_9147190_SNP [dm3] 2R_13259685_SNP [dm6]	G	A	1.600e^-5	0.722	UPSTREAM CG42319 INTERGENIC
2L	7207266	2L_7207266_SNP [dm3] 2L_7207266_SNP [dm6]	T	A	1.622e^-5	0.722	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784
3R	25776171	3R_25776171_SNP [dm3] 3R_29950449_SNP [dm6]	C	T	1.622e^-5	0.722	DOWNSTREAM TkR99D INTERGENIC
3L	2537851	3L_2537851_SNP [dm3] 3L_2537851_SNP [dm6]	G	T	1.653e^-5	0.722	INTRON Spn
2R	15903314	2R_15903314_SNP [dm3] 2R_20015809_SNP [dm6]	A	C	1.742e^-5	0.722	DOWNSTREAM CR44630 INTERGENIC
2L	8447278	2L_8447278_SNP [dm3] 2L_8447278_SNP [dm6]	T	G	1.762e^-5	0.722	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	16876913	X_16876913_SNP [dm3] X_16982880_SNP [dm6]	T	G	1.816e^-5	0.722	INTRON CG45002
3L	16202260	3L_16202260_SNP [dm3] 3L_16209160_SNP [dm6]	A	C	1.828e^-5	0.722	INTERGENIC	TF binding site mE1_TFBS_cad
2R	9147155	2R_9147155_SNP [dm3] 2R_13259650_SNP [dm6]	A	T	1.829e^-5	0.722	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
X	21161307	X_21161307_SNP [dm3] X_21290280_SNP [dm6]	T	A	1.849e^-5	0.722	SPLICE_SITE_REGION CG1494 INTRON CG1494
2L	15281202	2L_15281202_DEL [dm3] 2L_15281202_DEL [dm6]	CC	T	1.919e^-5	0.724	DOWNSTREAM CR45349 INTERGENIC
3L	20879759	3L_20879759_SNP [dm3] 3L_20886659_SNP [dm6]	G	T	1.951e^-5	0.724	DOWNSTREAM CR44686 INTERGENIC
X	5115825	X_5115825_SNP [dm3] X_5221792_SNP [dm6]	A	G	1.987e^-5	0.724	INTRON CG15465 & 1 other
3L	11276693	3L_11276693_SNP [dm3] 3L_11283593_SNP [dm6]	A	G	2.008e^-5	0.724	INTERGENIC
2L	372959	2L_372959_SNP [dm3] 2L_372959_SNP [dm6]	G	T	2.086e^-5	0.726	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
X	10534117	X_10534117_SNP [dm3] X_10640084_SNP [dm6]	A	G	2.163e^-5	0.726	INTRON X11Lbeta
X	4123732	X_4123732_DEL [dm3] X_4229699_DEL [dm6]	AA	A	2.245e^-5	0.726	INTERGENIC
3R	10573746	3R_10573746_SNP [dm3] 3R_14748024_SNP [dm6]	A	G	2.317e^-5	0.726	UPSTREAM smp-30 INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3R	20551315	3R_20551315_DEL [dm3] 3R_24725593_DEL [dm6]	CA	C	2.327e^-5	0.726	INTRON tok	TF binding site BDTNP1_TFBS_dl
X	18463732	X_18463732_SNP [dm3] X_18569699_SNP [dm6]	A	G	2.388e^-5	0.726	INTRON Bx	TF binding site BDTNP1_TFBS_da
2R	16921529	2R_16921529_SNP [dm3] 2R_21034024_SNP [dm6]	G	A	2.407e^-5	0.726	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	12030328	2L_12030328_DEL [dm3] 2L_12030328_DEL [dm6]	GCGG	G	2.429e^-5	0.726	INTRON dmGlut	TF binding site mE1_TFBS_cad
3L	5437561	3L_5437561_SNP [dm3] 3L_5444461_SNP [dm6]	C	T	2.467e^-5	0.726	INTERGENIC
X	3003158	X_3003158_SNP [dm3] X_3109125_SNP [dm6]	A	G	2.502e^-5	0.726	INTRON kirre
3L	7777439	3L_7777439_SNP [dm3] 3L_7784339_SNP [dm6]	C	T	2.503e^-5	0.726	INTRON CG32369
3L	9661315	3L_9661315_SNP [dm3] 3L_9668215_SNP [dm6]	A	G	2.542e^-5	0.726	INTRON fry	TF binding site mE1_TFBS_cad
3R	9959340	3R_9959340_SNP [dm3] 3R_14133618_SNP [dm6]	C	T	2.564e^-5	0.726	INTERGENIC
X	3324729	X_3324729_SNP [dm3] X_3430696_SNP [dm6]	C	T	2.628e^-5	0.726	INTRON CR44999 & 1 other
X	13623505	X_13623505_SNP [dm3] X_13729472_SNP [dm6]	T	C	2.641e^-5	0.726	SYNONYMOUS_CODING g	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10534327	X_10534327_SNP [dm3] X_10640294_SNP [dm6]	A	T	2.705e^-5	0.726	INTRON X11Lbeta
3R	27128046	3R_27128046_SNP [dm3] 3R_31302324_SNP [dm6]	C	T	2.758e^-5	0.726	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_inv
3L	6100265	3L_6100265_SNP [dm3] 3L_6107165_SNP [dm6]	C	T	2.771e^-5	0.726	INTRON Ets65A	TF binding site mE1_TFBS_cad
3L	12155898	3L_12155898_SNP [dm3] 3L_12162798_SNP [dm6]	T	C	2.774e^-5	0.726	INTRON CG9760
X	10765534	X_10765534_SNP [dm3] X_10871501_SNP [dm6]	T	G	2.818e^-5	0.726	DOWNSTREAM CG2157 & 1 other INTRON CG1637	TF binding site mE1_TFBS_sens
2L	17709241	2L_17709241_SNP [dm3] 2L_17709241_SNP [dm6]	T	C	2.852e^-5	0.726	INTRON CadN
3L	4817350	3L_4817350_SNP [dm3] 3L_4817350_SNP [dm6]	G	A	2.865e^-5	0.726	SYNONYMOUS_CODING Dhc64C
2R	7835259	2R_7835259_SNP [dm3] 2R_11947754_SNP [dm6]	A	C	2.975e^-5	0.736	INTRON CG13188
X	18464186	X_18464186_SNP [dm3] X_18570153_SNP [dm6]	C	A	3.018e^-5	0.736	INTRON Bx	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
2R	15903310	2R_15903310_DEL [dm3] 2R_20015805_DEL [dm6]	TGA	T	3.023e^-5	0.736	DOWNSTREAM CR44630 INTERGENIC
X	10534108	X_10534108_SNP [dm3] X_10640075_SNP [dm6]	A	G	3.125e^-5	0.748	INTRON X11Lbeta
2R	10970044	2R_10970044_SNP [dm3] 2R_15082539_SNP [dm6]	A	G	3.202e^-5	0.748	INTERGENIC
3L	3680402	3L_3680402_SNP [dm3] 3L_3680402_SNP [dm6]	T	C	3.244e^-5	0.748	INTERGENIC
2L	14689608	2L_14689608_SNP [dm3] 2L_14689608_SNP [dm6]	A	G	3.307e^-5	0.748	UPSTREAM osp INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2645600	3L_2645600_SNP [dm3] 3L_2645600_SNP [dm6]	A	T	3.340e^-5	0.748	INTRON CG1143	TF binding site mE1_TFBS_cad
3L	6100256	3L_6100256_SNP [dm3] 3L_6107156_SNP [dm6]	A	C	3.411e^-5	0.748	INTRON Ets65A	TF binding site mE1_TFBS_cad
2L	8447265	2L_8447265_SNP [dm3] 2L_8447265_SNP [dm6]	A	G	3.413e^-5	0.748	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	15583707	2R_15583707_SNP [dm3] 2R_19696202_SNP [dm6]	G	A	3.439e^-5	0.748	EXON CR44506	regulatory region REDfly_CRMs
2R	11976055	2R_11976055_SNP [dm3] 2R_16088550_SNP [dm6]	C	A	3.443e^-5	0.748	INTRON Dg
3L	9735039	3L_9735039_SNP [dm3] 3L_9741939_SNP [dm6]	A	T	3.494e^-5	0.748	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17122056	2R_17122056_SNP [dm3] 2R_21234551_SNP [dm6]	C	T	3.509e^-5	0.748	INTRON ASPP
2R	9147232	2R_9147232_SNP [dm3] 2R_13259727_SNP [dm6]	C	A	3.552e^-5	0.748	UPSTREAM CG42319 INTERGENIC
2L	3431137	2L_3431137_SNP [dm3] 2L_3431137_SNP [dm6]	T	C	3.640e^-5	0.752	INTERGENIC
2L	2669602	2L_2669602_SNP [dm3] 2L_2669602_SNP [dm6]	G	T	3.653e^-5	0.752	UPSTREAM Gr23a INTERGENIC
X	6477081	X_6477081_SNP [dm3] X_6583048_SNP [dm6]	G	T	3.689e^-5	0.752	SYNONYMOUS_CODING CG34417 INTRON CG34417
3L	2645081	3L_2645081_SNP [dm3] 3L_2645081_SNP [dm6]	A	G	3.735e^-5	0.753	UPSTREAM CG1143 INTERGENIC
2L	21911919	2L_21911919_SNP [dm3] 2L_21911919_SNP [dm6]	T	A	3.863e^-5	0.765	INTERGENIC	transposable element FlyBase
X	8956566	X_8956566_SNP [dm3] X_9062533_SNP [dm6]	T	A	3.876e^-5	0.765	INTRON CG15365
3R	10576324	3R_10576324_SNP [dm3] 3R_14750602_SNP [dm6]	C	T	4.009e^-5	0.766	INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z
3L	6100268	3L_6100268_SNP [dm3] 3L_6107168_SNP [dm6]	G	C	4.014e^-5	0.766	INTRON Ets65A	TF binding site mE1_TFBS_cad
3R	5145048	3R_5145048_SNP [dm3] 3R_9319326_SNP [dm6]	G	A	4.028e^-5	0.766	INTRON CG8861
3R	10576213	3R_10576213_SNP [dm3] 3R_14750491_SNP [dm6]	T	C	4.135e^-5	0.766	INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z
2L	14717198	2L_14717198_SNP [dm3] 2L_14717198_SNP [dm6]	A	T	4.164e^-5	0.766	INTERGENIC	TF binding site mE1_TFBS_cad
X	5480679	X_5480679_SNP [dm3] X_5586646_SNP [dm6]	T	A	4.257e^-5	0.766	INTERGENIC
2R	16289150	2R_16289150_SNP [dm3] 2R_20401645_SNP [dm6]	G	A	4.282e^-5	0.766	INTERGENIC
2L	16445724	2L_16445724_SNP [dm3] 2L_16445724_SNP [dm6]	C	T	4.313e^-5	0.766	SYNONYMOUS_CODING Idgf1 INTRON CG5888
2L	13459264	2L_13459264_SNP [dm3] 2L_13459264_SNP [dm6]	T	C	4.315e^-5	0.766	UPSTREAM CR45684 & 1 other INTRON CG42784
2L	7207197	2L_7207197_SNP [dm3] 2L_7207197_SNP [dm6]	A	G	4.345e^-5	0.766	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784	TF binding site mE1_TFBS_sens
2L	15540721	2L_15540721_SNP [dm3] 2L_15540721_SNP [dm6]	T	A	4.375e^-5	0.766	INTERGENIC
3L	16693889	3L_16693889_SNP [dm3] 3L_16700789_SNP [dm6]	C	T	4.375e^-5	0.766	INTRON Lasp & 1 other
2L	378373	2L_378373_SNP [dm3] 2L_378373_SNP [dm6]	A	T	4.448e^-5	0.766	UTR_5_PRIME al	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
X	13136787	X_13136787_SNP [dm3] X_13242754_SNP [dm6]	C	T	4.464e^-5	0.766	INTRON mew	TF binding site BDTNP1_TFBS_da
2R	12696827	2R_12696827_SNP [dm3] 2R_16809322_SNP [dm6]	C	A	4.723e^-5	0.766	INTERGENIC
2R	9147240	2R_9147240_SNP [dm3] 2R_13259735_SNP [dm6]	G	T	4.846e^-5	0.766	UPSTREAM CG42319 INTERGENIC
X	11330776	X_11330776_DEL [dm3] X_11436743_DEL [dm6]	AA	A	4.943e^-5	0.766	INTRON Evi5
3L	9661317	3L_9661317_SNP [dm3] 3L_9668217_SNP [dm6]	A	G	5.087e^-5	0.766	INTRON fry	TF binding site mE1_TFBS_cad
2L	7718985	2L_7718985_SNP [dm3] 2L_7718985_SNP [dm6]	T	A	5.090e^-5	0.766	SYNONYMOUS_CODING CG13793 DOWNSTREAM CG13794
3L	7072423	3L_7072423_SNP [dm3] 3L_7079323_SNP [dm6]	C	A	5.096e^-5	0.766	INTERGENIC
2R	3238864	2R_3238864_SNP [dm3] 2R_7351359_SNP [dm6]	A	T	5.128e^-5	0.766	INTRON Dscam1	TF binding site mE1_TFBS_inv
3L	428271	3L_428271_SNP [dm3] 3L_428271_SNP [dm6]	T	A	5.158e^-5	0.766	INTERGENIC
3L	14561384	3L_14561384_SNP [dm3] 3L_14568284_SNP [dm6]	G	A	5.172e^-5	0.766	DOWNSTREAM CG42758 INTERGENIC
2R	9147237	2R_9147237_SNP [dm3] 2R_13259732_SNP [dm6]	C	A	5.201e^-5	0.766	UPSTREAM CG42319 INTERGENIC
3R	4415773	3R_4415773_SNP [dm3] 3R_8590051_SNP [dm6]	G	T	5.223e^-5	0.766	INTRON 5-HT2B	TF binding site mE1_TFBS_cad
2R	9146968	2R_9146968_SNP [dm3] 2R_13259463_SNP [dm6]	T	C	5.315e^-5	0.766	UPSTREAM CG42319 DOWNSTREAM CG10799 INTERGENIC
3L	7477102	3L_7477102_SNP [dm3] 3L_7484002_SNP [dm6]	G	C	5.397e^-5	0.766	INTERGENIC
2L	10790313	2L_10790313_SNP [dm3] 2L_10790313_SNP [dm6]	A	G	5.406e^-5	0.766	START_GAINED CG31870 UTR_5_PRIME CG31870 INTRON CG31869
2R	18418701	2R_18418701_SNP [dm3] 2R_22531196_SNP [dm6]	A	C	5.418e^-5	0.766	INTRON px
2R	18418702	2R_18418702_SNP [dm3] 2R_22531197_SNP [dm6]	C	A	5.418e^-5	0.766	INTRON px
2L	15281222	2L_15281222_SNP [dm3] 2L_15281222_SNP [dm6]	A	G	5.422e^-5	0.766	DOWNSTREAM CR45349 INTERGENIC
3L	11270029	3L_11270029_SNP [dm3] 3L_11276929_SNP [dm6]	A	C	5.443e^-5	0.766	INTERGENIC
2L	387696	2L_387696_SNP [dm3] 2L_387696_SNP [dm6]	T	A	5.549e^-5	0.766	DOWNSTREAM al INTERGENIC
2L	15960063	2L_15960063_SNP [dm3] 2L_15960063_SNP [dm6]	G	A	5.585e^-5	0.766	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
3R	10435085	3R_10435085_SNP [dm3] 3R_14609363_SNP [dm6]	G	T	5.588e^-5	0.766	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25588806	3R_25588806_SNP [dm3] 3R_29763084_SNP [dm6]	A	G	5.589e^-5	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12036138	2L_12036138_SNP [dm3] 2L_12036138_SNP [dm6]	G	A	5.672e^-5	0.766	UTR_3_PRIME Tom70 DOWNSTREAM CG18788
3R	13600672	3R_13600672_SNP [dm3] 3R_17774950_SNP [dm6]	C	T	5.688e^-5	0.766	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9147010	2R_9147010_SNP [dm3] 2R_13259505_SNP [dm6]	T	G	5.726e^-5	0.766	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2R	9147009	2R_9147009_SNP [dm3] 2R_13259504_SNP [dm6]	T	G	5.731e^-5	0.766	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3L	20721773	3L_20721773_SNP [dm3] 3L_20728673_SNP [dm6]	T	C	5.737e^-5	0.766	DOWNSTREAM CR43945 INTERGENIC
2L	14702724	2L_14702724_SNP [dm3] 2L_14702724_SNP [dm6]	C	G	5.782e^-5	0.766	INTERGENIC
X	5534162	X_5534162_SNP [dm3] X_5640129_SNP [dm6]	C	A	5.837e^-5	0.766	INTRON CG42492
3L	2645611	3L_2645611_SNP [dm3] 3L_2645611_SNP [dm6]	C	A	5.865e^-5	0.766	INTRON CG1143	TF binding site mE1_TFBS_cad
2L	22306203	2L_22306203_SNP [dm3] 2L_22306203_SNP [dm6]	T	C	5.898e^-5	0.766	INTERGENIC
3L	4841343	3L_4841343_SNP [dm3] 3L_4841343_SNP [dm6]	A	C	5.901e^-5	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	2753621	2R_2753621_SNP [dm3] 2R_6866116_SNP [dm6]	G	A	5.921e^-5	0.766	INTRON coro
3R	27112061	3R_27112061_SNP [dm3] 3R_31286339_SNP [dm6]	A	C	5.923e^-5	0.766	INTERGENIC
2R	9147365	2R_9147365_SNP [dm3] 2R_13259860_SNP [dm6]	G	C	5.993e^-5	0.766	UPSTREAM CG42319 INTERGENIC
3L	11168307	3L_11168307_SNP [dm3] 3L_11175207_SNP [dm6]	T	A	6.131e^-5	0.766	INTRON CG14142
3L	5475585	3L_5475585_SNP [dm3] 3L_5482485_SNP [dm6]	A	T	6.169e^-5	0.766	NON_SYNONYMOUS_CODING CG4835
3R	10576200	3R_10576200_DEL [dm3] 3R_14750478_DEL [dm6]	ATAA	A	6.197e^-5	0.766	INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z
2L	16445674	2L_16445674_SNP [dm3] 2L_16445674_SNP [dm6]	G	A	6.232e^-5	0.766	NON_SYNONYMOUS_CODING Idgf1 INTRON CG5888
2L	1100900	2L_1100900_SNP [dm3] 2L_1100900_SNP [dm6]	C	G	6.257e^-5	0.766	INTRON CG4629
2R	9147038	2R_9147038_SNP [dm3] 2R_13259533_SNP [dm6]	G	A	6.278e^-5	0.766	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
X	5120460	X_5120460_SNP [dm3] X_5226427_SNP [dm6]	A	G	6.292e^-5	0.766	INTRON CG15465 & 1 other
3R	12898269	3R_12898269_SNP [dm3] 3R_17072547_SNP [dm6]	T	A	6.340e^-5	0.766	UPSTREAM mRpS11 INTRON Ns1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4125102	X_4125102_DEL [dm3] X_4231069_DEL [dm6]	GCGACCAAATGT...	G	6.390e^-5	0.766	INTERGENIC
3R	15071621	3R_15071621_SNP [dm3] 3R_19245899_SNP [dm6]	C	T	6.461e^-5	0.766	INTRON unc79
3R	12898293	3R_12898293_SNP [dm3] 3R_17072571_SNP [dm6]	C	T	6.561e^-5	0.766	UPSTREAM mRpS11 INTRON Ns1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4025686	3L_4025686_SNP [dm3] 3L_4025686_SNP [dm6]	C	T	6.594e^-5	0.766	UTR_5_PRIME CG11594 UPSTREAM CG11594 INTRON CG11594
X	9816859	X_9816859_DEL [dm3] X_9922826_DEL [dm6]	CC	C	6.653e^-5	0.766	INTERGENIC
X	11756760	X_11756760_SNP [dm3] X_11862727_SNP [dm6]	C	T	6.673e^-5	0.766	SYNONYMOUS_CODING ATP7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18486138	X_18486138_SNP [dm3] X_18592105_SNP [dm6]	C	T	6.676e^-5	0.766	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4415784	3R_4415784_SNP [dm3] 3R_8590062_SNP [dm6]	C	T	6.717e^-5	0.766	INTRON 5-HT2B	TF binding site mE1_TFBS_cad
3R	4415796	3R_4415796_SNP [dm3] 3R_8590074_SNP [dm6]	C	A	6.717e^-5	0.766	INTRON 5-HT2B	TF binding site mE1_TFBS_cad
3L	4737896	3L_4737896_SNP [dm3] 3L_4737896_SNP [dm6]	G	A	6.717e^-5	0.766	INTRON RhoGEF64C
2L	18932869	2L_18932869_INS [dm3] 2L_18932869_INS [dm6]	T	TT	6.744e^-5	0.766	INTRON ssp3
2L	3997257	2L_3997257_INS [dm3] 2L_3997257_INS [dm6]	T	TGA	6.838e^-5	0.766	INTERGENIC
X	4652255	X_4652255_SNP [dm3] X_4758222_SNP [dm6]	A	G	6.973e^-5	0.766	INTERGENIC
2R	13810107	2R_13810107_SNP [dm3] 2R_17922602_SNP [dm6]	G	T	6.992e^-5	0.766	INTRON Elk
3L	14320848	3L_14320848_SNP [dm3] 3L_14327748_SNP [dm6]	C	T	7.011e^-5	0.766	INTRON fz
2L	8697403	2L_8697403_SNP [dm3] 2L_8697403_SNP [dm6]	T	G	7.013e^-5	0.766	INTRON Hnf4
3L	1568524	3L_1568524_SNP [dm3] 3L_1568524_SNP [dm6]	A	C	7.125e^-5	0.766	UTR_5_PRIME CG7879 UPSTREAM CG12004 DOWNSTREAM CG12003	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3L	5646475	3L_5646475_SNP [dm3] 3L_5653375_SNP [dm6]	G	A	7.144e^-5	0.766	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	13310290	3L_13310290_SNP [dm3] 3L_13317190_SNP [dm6]	T	G	7.152e^-5	0.766	INTERGENIC
2L	19480177	2L_19480177_SNP [dm3] 2L_19480177_SNP [dm6]	A	G	7.157e^-5	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	7.205e^-5	0.766	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
2L	14009703	2L_14009703_INS [dm3] 2L_14009703_INS [dm6]	T	TAT	7.217e^-5	0.766	DOWNSTREAM CG42692 & 1 other INTERGENIC
2R	9147034	2R_9147034_SNP [dm3] 2R_13259529_SNP [dm6]	G	T	7.324e^-5	0.766	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3L	1565411	3L_1565411_SNP [dm3] 3L_1565411_SNP [dm6]	C	T	7.425e^-5	0.766	START_GAINED CG12003 UTR_5_PRIME CG12003 INTRON CG7879	TF binding site mE1_TFBS_sens
X	11756925	X_11756925_SNP [dm3] X_11862892_SNP [dm6]	T	C	7.621e^-5	0.766	INTRON ATP7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17903053	3L_17903053_SNP [dm3] 3L_17909953_SNP [dm6]	C	A	7.689e^-5	0.766	NON_SYNONYMOUS_CODING CG5290 DOWNSTREAM CG14353
3L	11404306	3L_11404306_SNP [dm3] 3L_11411206_SNP [dm6]	T	C	7.747e^-5	0.766	INTERGENIC
2R	16394601	2R_16394601_SNP [dm3] 2R_20507096_SNP [dm6]	T	A	7.759e^-5	0.766	UPSTREAM CR44644 DOWNSTREAM CR44645 INTERGENIC
3R	4342921	3R_4342921_SNP [dm3] 3R_8517199_SNP [dm6]	C	T	7.791e^-5	0.766	UPSTREAM CG11737 INTERGENIC
2R	6588137	2R_6588137_SNP [dm3] 2R_10700632_SNP [dm6]	C	T	7.858e^-5	0.766	INTRON stan
2L	10218519	2L_10218519_SNP [dm3] 2L_10218519_SNP [dm6]	C	G	7.872e^-5	0.766	INTRON Npc1a	TF binding site mE1_TFBS_HSA
2L	2360614	2L_2360614_SNP [dm3] 2L_2360614_SNP [dm6]	A	G	7.876e^-5	0.766	INTRON Rab5
X	18636057	X_18636057_SNP [dm3] X_18742024_SNP [dm6]	T	G	7.929e^-5	0.766	INTERGENIC
2L	15959956	2L_15959956_SNP [dm3] 2L_15959956_SNP [dm6]	G	C	7.981e^-5	0.766	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
3L	4159506	3L_4159506_SNP [dm3] 3L_4159506_SNP [dm6]	T	A	8.040e^-5	0.766	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	14087396	2R_14087396_SNP [dm3] 2R_18199891_SNP [dm6]	T	C	8.059e^-5	0.766	INTERGENIC
X	8227006	X_8227006_DEL [dm3] X_8332973_DEL [dm6]	CCACTTCG	C	8.067e^-5	0.766	INTRON nAChRalpha3
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	8.163e^-5	0.766	INTRON dnc
3L	7473829	3L_7473829_SNP [dm3] 3L_7480729_SNP [dm6]	C	G	8.244e^-5	0.766	INTERGENIC	TF binding site mE1_TFBS_inv
2L	12030350	2L_12030350_SNP [dm3] 2L_12030350_SNP [dm6]	G	A	8.272e^-5	0.766	INTRON dmGlut	TF binding site mE1_TFBS_cad
X	10765530	X_10765530_SNP [dm3] X_10871497_SNP [dm6]	T	A	8.275e^-5	0.766	DOWNSTREAM CG2157 & 1 other INTRON CG1637	TF binding site mE1_TFBS_sens
3L	14561228	3L_14561228_SNP [dm3] 3L_14568128_SNP [dm6]	T	G	8.295e^-5	0.766	UTR_3_PRIME CG42758
X	18636703	X_18636703_SNP [dm3] X_18742670_SNP [dm6]	A	T	8.395e^-5	0.766	INTERGENIC
3L	15639667	3L_15639667_SNP [dm3] 3L_15646567_SNP [dm6]	C	G	8.417e^-5	0.766	INTRON comm3
3L	9636613	3L_9636613_SNP [dm3] 3L_9643513_SNP [dm6]	C	A	8.481e^-5	0.766	SYNONYMOUS_CODING fry UPSTREAM CG33696
3L	8885320	3L_8885320_SNP [dm3] 3L_8892220_SNP [dm6]	T	G	8.560e^-5	0.766	SPLICE_SITE_REGION Mcm7 INTRON Mcm7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14775733	3R_14775733_SNP [dm3] 3R_18950011_SNP [dm6]	G	A	8.569e^-5	0.766	UPSTREAM CG42613 & 1 other INTRON CG42613
3L	41504	3L_41504_SNP [dm3] 3L_41504_SNP [dm6]	A	G	8.638e^-5	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	5114987	X_5114987_SNP [dm3] X_5220954_SNP [dm6]	T	C	8.714e^-5	0.766	INTRON CG15465 & 1 other
2R	4950454	2R_4950454_SNP [dm3] 2R_9062949_SNP [dm6]	G	A	8.719e^-5	0.766	INTRON ana	regulatory region REDfly_CRMs
3R	15644658	3R_15644658_DEL [dm3] 3R_19818936_DEL [dm6]	CAGTGC	C	8.724e^-5	0.766	INTRON bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18180957	2R_18180957_SNP [dm3] 2R_22293452_SNP [dm6]	C	T	8.749e^-5	0.766	START_GAINED CG5819 UTR_5_PRIME CG5819 INTRON CG5819
3R	18780272	3R_18780272_SNP [dm3] 3R_22954550_SNP [dm6]	A	G	8.784e^-5	0.766	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	5208379	X_5208379_SNP [dm3] X_5314346_SNP [dm6]	T	A	8.787e^-5	0.766	NON_SYNONYMOUS_CODING CG4198 DOWNSTREAM CG15930	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3245320	2L_3245320_SNP [dm3] 2L_3245320_SNP [dm6]	T	C	8.806e^-5	0.766	INTERGENIC
X	20434591	X_20434591_SNP [dm3] X_20563564_SNP [dm6]	A	G	8.847e^-5	0.766	INTRON RunxB
2L	357751	2L_357751_SNP [dm3] 2L_357751_SNP [dm6]	G	C	8.855e^-5	0.766	SPLICE_SITE_REGION Ent1 UTR_5_PRIME Ent1 DOWNSTREAM CR45367 INTRON Ent1 EXON CR45366	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	10543785	X_10543785_SNP [dm3] X_10649752_SNP [dm6]	T	C	8.915e^-5	0.766	INTRON X11Lbeta
2L	15281172	2L_15281172_SNP [dm3] 2L_15281172_SNP [dm6]	G	A	8.920e^-5	0.766	DOWNSTREAM CR45349 INTERGENIC
3L	11621381	3L_11621381_SNP [dm3] 3L_11628281_SNP [dm6]	G	T	8.942e^-5	0.766	DOWNSTREAM PCID2 INTRON CG18815	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	9377935	3L_9377935_SNP [dm3] 3L_9384835_SNP [dm6]	A	G	8.956e^-5	0.766	UTR_3_PRIME Hsp27 DOWNSTREAM CR43483	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	7613485	X_7613485_SNP [dm3] X_7719452_SNP [dm6]	G	A	9.054e^-5	0.766	INTERGENIC
2R	2756388	2R_2756388_SNP [dm3] 2R_6868883_SNP [dm6]	C	T	9.082e^-5	0.766	INTRON coro
3L	4737859	3L_4737859_SNP [dm3] 3L_4737859_SNP [dm6]	A	G	9.148e^-5	0.766	INTRON RhoGEF64C
2R	14331781	2R_14331781_SNP [dm3] 2R_18444276_SNP [dm6]	G	T	9.198e^-5	0.766	INTRON slim
2L	2939617	2L_2939617_SNP [dm3] 2L_2939617_SNP [dm6]	T	C	9.268e^-5	0.766	INTRON lilli
3L	18531737	3L_18531737_SNP [dm3] 3L_18538637_SNP [dm6]	A	G	9.276e^-5	0.766	INTERGENIC
3L	2644337	3L_2644337_SNP [dm3] 3L_2644337_SNP [dm6]	T	A	9.349e^-5	0.766	UPSTREAM CG14949 INTERGENIC
X	12355327	X_12355327_SNP [dm3] X_12461294_SNP [dm6]	A	G	9.389e^-5	0.766	INTRON Rab40
2L	21849370	2L_21849370_SNP [dm3] 2L_21849370_SNP [dm6]	C	T	9.429e^-5	0.766	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4147037	2L_4147037_SNP [dm3] 2L_4147037_SNP [dm6]	A	T	9.497e^-5	0.766	INTERGENIC
X	4094020	X_4094020_SNP [dm3] X_4199987_SNP [dm6]	T	C	9.617e^-5	0.766	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5160275	2L_5160275_SNP [dm3] 2L_5160275_SNP [dm6]	T	G	9.626e^-5	0.766	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7467554	3L_7467554_SNP [dm3] 3L_7474454_SNP [dm6]	G	A	9.636e^-5	0.766	INTERGENIC
X	10030942	X_10030942_SNP [dm3] X_10136909_SNP [dm6]	C	T	9.647e^-5	0.766	INTRON CR44894 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11976067	2R_11976067_SNP [dm3] 2R_16088562_SNP [dm6]	T	A	9.682e^-5	0.766	INTRON Dg
3R	18780271	3R_18780271_SNP [dm3] 3R_22954549_SNP [dm6]	G	A	9.706e^-5	0.766	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	6795339	2R_6795339_SNP [dm3] 2R_10907834_SNP [dm6]	G	T	9.710e^-5	0.766	INTERGENIC
2R	12425809	2R_12425809_SNP [dm3] 2R_16538304_SNP [dm6]	T	C	9.716e^-5	0.766	INTERGENIC
X	14154319	X_14154319_SNP [dm3] X_14260286_SNP [dm6]	G	C	9.724e^-5	0.766	UPSTREAM CG1461 INTERGENIC
3L	16570715	3L_16570715_SNP [dm3] 3L_16577615_SNP [dm6]	C	G	9.743e^-5	0.766	NON_SYNONYMOUS_CODING nxf2 DOWNSTREAM mbf1	transposable element FlyBase
2L	9438520	2L_9438520_SNP [dm3] 2L_9438520_SNP [dm6]	C	T	9.882e^-5	0.766	INTRON numb	TF binding site BDTNP1_TFBS_dl
X	18636049	X_18636049_SNP [dm3] X_18742016_SNP [dm6]	G	A	9.905e^-5	0.766	INTERGENIC
3L	16202254	3L_16202254_SNP [dm3] 3L_16209154_SNP [dm6]	C	T	9.910e^-5	0.766	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9677901	3L_9677901_SNP [dm3] 3L_9684801_SNP [dm6]	C	T	9.951e^-5	0.766	SYNONYMOUS_CODING CG6767 UPSTREAM CG16719	TF binding site mE1_TFBS_cad
2R	11128680	2R_11128680_INS [dm3] 2R_15241175_INS [dm6]	T	TAAGCT	9.982e^-5	0.766	INTRON Fs
2R	14007488	2R_14007488_SNP [dm3] 2R_18119983_SNP [dm6]	T	C	9.984e^-5	0.766	INTRON stau	TF binding site mE1_TFBS_cad
2L	1072797	2L_1072797_SNP [dm3] 2L_1072797_SNP [dm6]	T	A	1.001e^-4	0.766	INTRON S
3R	27127740	3R_27127740_SNP [dm3] 3R_31302018_SNP [dm6]	G	C	1.002e^-4	0.766	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	18486263	X_18486263_SNP [dm3] X_18592230_SNP [dm6]	G	A	1.011e^-4	0.766	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11722638	3L_11722638_SNP [dm3] 3L_11729538_SNP [dm6]	G	A	1.014e^-4	0.766	SYNONYMOUS_CODING CG32088
3R	26659810	3R_26659810_SNP [dm3] 3R_30834088_SNP [dm6]	A	C	1.017e^-4	0.766	INTRON CG15544
3R	4208961	3R_4208961_SNP [dm3] 3R_8383239_SNP [dm6]	C	T	1.027e^-4	0.766	UTR_3_PRIME CG45263 INTRON CG45263
2L	1072752	2L_1072752_SNP [dm3] 2L_1072752_SNP [dm6]	G	T	1.033e^-4	0.766	INTRON S
2L	19506514	2L_19506514_SNP [dm3] 2L_19506514_SNP [dm6]	C	G	1.043e^-4	0.766	INTRON CG10188
3L	4737895	3L_4737895_SNP [dm3] 3L_4737895_SNP [dm6]	A	G	1.044e^-4	0.766	INTRON RhoGEF64C
X	7618993	X_7618993_SNP [dm3] X_7724960_SNP [dm6]	G	C	1.051e^-4	0.766	SYNONYMOUS_CODING Hira
X	9778558	X_9778558_SNP [dm3] X_9884525_SNP [dm6]	T	A	1.056e^-4	0.766	SYNONYMOUS_CODING CG9691 DOWNSTREAM CG9689
2R	3188996	2R_3188996_SNP [dm3] 2R_7301491_SNP [dm6]	T	A	1.064e^-4	0.766	DOWNSTREAM pwn INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	5646477	3L_5646477_SNP [dm3] 3L_5653377_SNP [dm6]	T	G	1.077e^-4	0.766	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
X	11330757	X_11330757_SNP [dm3] X_11436724_SNP [dm6]	A	G	1.082e^-4	0.766	INTRON Evi5
X	10517804	X_10517804_SNP [dm3] X_10623771_SNP [dm6]	A	G	1.088e^-4	0.766	UTR_3_PRIME CG9806 UPSTREAM Rab9Db
X	18464310	X_18464310_SNP [dm3] X_18570277_SNP [dm6]	C	T	1.088e^-4	0.766	INTRON Bx	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
2R	10722485	2R_10722485_DEL [dm3] 2R_14834980_DEL [dm6]	AA	A	1.094e^-4	0.766	INTERGENIC
3L	4025813	3L_4025813_SNP [dm3] 3L_4025813_SNP [dm6]	A	G	1.097e^-4	0.766	UTR_5_PRIME CG11594 UPSTREAM CG11594 & 1 other INTRON CG11594
3L	18066871	3L_18066871_SNP [dm3] 3L_18073771_SNP [dm6]	G	T	1.098e^-4	0.766	NON_SYNONYMOUS_CODING CG44004 DOWNSTREAM CR45391
2L	20538018	2L_20538018_SNP [dm3] 2L_20538018_SNP [dm6]	C	T	1.099e^-4	0.766	INTERGENIC	TF binding site mE1_TFBS_inv
2L	388595	2L_388595_SNP [dm3] 2L_388595_SNP [dm6]	G	T	1.102e^-4	0.766	INTERGENIC
2R	14754487	2R_14754487_SNP [dm3] 2R_18866982_SNP [dm6]	T	A	1.104e^-4	0.766	UPSTREAM DptB DOWNSTREAM Dpt & 1 other INTERGENIC
2L	4871809	2L_4871809_SNP [dm3] 2L_4871809_SNP [dm6]	C	G	1.104e^-4	0.766	INTRON pog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	12394560	2L_12394560_SNP [dm3] 2L_12394560_SNP [dm6]	A	C	1.106e^-4	0.766	INTRON bru-2
X	21150033	X_21150033_SNP [dm3] X_21279006_SNP [dm6]	A	T	1.107e^-4	0.766	INTRON CG32521
3L	15760226	3L_15760226_SNP [dm3] 3L_15767126_SNP [dm6]	G	A	1.111e^-4	0.766	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	2707947	3R_2707947_SNP [dm3] 3R_6882225_SNP [dm6]	C	G	1.112e^-4	0.766	INTRON CR44931	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	15960006	2L_15960006_SNP [dm3] 2L_15960006_SNP [dm6]	T	C	1.116e^-4	0.766	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
2L	11388359	2L_11388359_SNP [dm3] 2L_11388359_SNP [dm6]	G	C	1.128e^-4	0.766	EXON CR43681	regulatory region REDfly_CRMs
2L	11401918	2L_11401918_SNP [dm3] 2L_11401918_SNP [dm6]	G	T	1.129e^-4	0.766	INTERGENIC	regulatory region REDfly_CRMs
3L	3874445	3L_3874445_SNP [dm3] 3L_3874445_SNP [dm6]	T	G	1.130e^-4	0.766	INTERGENIC
2R	8366265	2R_8366265_SNP [dm3] 2R_12478760_SNP [dm6]	A	C	1.130e^-4	0.766	INTRON Dh44-R2
3L	2645491	3L_2645491_SNP [dm3] 3L_2645491_SNP [dm6]	A	T	1.143e^-4	0.766	INTRON CG1143
2L	4147030	2L_4147030_SNP [dm3] 2L_4147030_SNP [dm6]	C	T	1.146e^-4	0.766	INTERGENIC
X	18486345	X_18486345_SNP [dm3] X_18592312_SNP [dm6]	A	G	1.152e^-4	0.766	INTERGENIC
3L	5646441	3L_5646441_SNP [dm3] 3L_5653341_SNP [dm6]	T	C	1.160e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sbb
3L	15760221	3L_15760221_SNP [dm3] 3L_15767121_SNP [dm6]	G	C	1.160e^-4	0.766	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	1564489	3L_1564489_SNP [dm3] 3L_1564489_SNP [dm6]	A	G	1.162e^-4	0.766	UPSTREAM CG12003 INTRON CG7879
2L	2919154	2L_2919154_SNP [dm3] 2L_2919154_SNP [dm6]	A	G	1.162e^-4	0.766	INTRON lilli
2R	7328313	2R_7328313_SNP [dm3] 2R_11440808_SNP [dm6]	G	A	1.163e^-4	0.766	INTRON CG7777
3L	1283871	3L_1283871_INS [dm3] 3L_1283871_INS [dm6]	A	AGGGGCCCCAAGTAATAAAG...	1.169e^-4	0.766	INTRON CG32333
2R	6795340	2R_6795340_SNP [dm3] 2R_10907835_SNP [dm6]	A	G	1.174e^-4	0.766	INTERGENIC
X	2926643	X_2926643_SNP [dm3] X_3032610_SNP [dm6]	C	T	1.176e^-4	0.766	INTRON kirre
2L	15540743	2L_15540743_SNP [dm3] 2L_15540743_SNP [dm6]	C	T	1.183e^-4	0.766	INTERGENIC
2R	10233208	2R_10233208_SNP [dm3] 2R_14345703_SNP [dm6]	C	T	1.184e^-4	0.766	INTRON Shroom
3L	12162991	3L_12162991_SNP [dm3] 3L_12169891_SNP [dm6]	C	G	1.186e^-4	0.766	INTRON Rh7
2R	2432713	2R_2432713_SNP [dm3] 2R_6545208_SNP [dm6]	A	T	1.189e^-4	0.766	INTRON jing	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12355297	X_12355297_SNP [dm3] X_12461264_SNP [dm6]	C	A	1.193e^-4	0.766	INTRON Rab40
X	3217173	X_3217173_SNP [dm3] X_3323140_SNP [dm6]	C	T	1.199e^-4	0.766	INTRON CR44886 & 1 other
2L	3245318	2L_3245318_SNP [dm3] 2L_3245318_SNP [dm6]	A	T	1.203e^-4	0.766	INTERGENIC
2R	14339840	2R_14339840_SNP [dm3] 2R_18452335_SNP [dm6]	T	A	1.211e^-4	0.766	SYNONYMOUS_CODING CG5190 DOWNSTREAM CG17669	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	4091100	X_4091100_SNP [dm3] X_4197067_SNP [dm6]	G	C	1.214e^-4	0.766	INTRON Fas2
2L	3189062	2L_3189062_INS [dm3] 2L_3189062_INS [dm6]	G	GTTCC	1.218e^-4	0.766	INTRON CG34393
2L	393515	2L_393515_SNP [dm3] 2L_393515_SNP [dm6]	A	G	1.220e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	10343488	2R_10343488_SNP [dm3] 2R_14455983_SNP [dm6]	G	T	1.223e^-4	0.766	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17977206	3L_17977206_DEL [dm3] 3L_17984106_DEL [dm6]	AG	A	1.227e^-4	0.766	INTRON Eip75B
X	2926636	X_2926636_SNP [dm3] X_3032603_SNP [dm6]	T	A	1.236e^-4	0.766	INTRON kirre
3L	1352726	3L_1352726_SNP [dm3] 3L_1352726_SNP [dm6]	A	G	1.236e^-4	0.766	UTR_3_PRIME 312 DOWNSTREAM 312 INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3L	13844149	3L_13844149_SNP [dm3] 3L_13851049_SNP [dm6]	C	T	1.236e^-4	0.766	SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad
3L	11277473	3L_11277473_SNP [dm3] 3L_11284373_SNP [dm6]	G	A	1.243e^-4	0.766	UPSTREAM CR45404 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	15671878	X_15671878_SNP [dm3] X_15777845_SNP [dm6]	G	A	1.243e^-4	0.766	NON_SYNONYMOUS_CODING CG43672
X	6788786	X_6788786_SNP [dm3] X_6894753_SNP [dm6]	A	C	1.248e^-4	0.766	INTERGENIC
X	10765525	X_10765525_INS [dm3] X_10871492_INS [dm6]	T	TAGT	1.250e^-4	0.766	DOWNSTREAM CG2157 & 1 other INTRON CG1637	TF binding site mE1_TFBS_sens
3L	14835265	3L_14835265_SNP [dm3] 3L_14842165_SNP [dm6]	T	C	1.250e^-4	0.766	INTRON CG17839
2R	15697740	2R_15697740_SNP [dm3] 2R_19810235_SNP [dm6]	T	G	1.256e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	7618967	X_7618967_SNP [dm3] X_7724934_SNP [dm6]	T	C	1.265e^-4	0.766	SYNONYMOUS_CODING Hira
2L	4871806	2L_4871806_INS [dm3] 2L_4871806_INS [dm6]	A	ACA	1.273e^-4	0.766	INTRON pog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	12260510	2L_12260510_SNP [dm3] 2L_12260510_SNP [dm6]	T	C	1.284e^-4	0.766	INTRON aret
3L	2644985	3L_2644985_SNP [dm3] 3L_2644985_SNP [dm6]	T	A	1.287e^-4	0.766	UPSTREAM CG1143 INTERGENIC
3L	14957100	3L_14957100_SNP [dm3] 3L_14964000_SNP [dm6]	T	G	1.290e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
3L	13584878	3L_13584878_SNP [dm3] 3L_13591778_SNP [dm6]	C	T	1.295e^-4	0.766	INTRON bru-3
3R	27112009	3R_27112009_SNP [dm3] 3R_31286287_SNP [dm6]	C	T	1.298e^-4	0.766	INTERGENIC
3L	1568532	3L_1568532_SNP [dm3] 3L_1568532_SNP [dm6]	C	G	1.314e^-4	0.766	UTR_5_PRIME CG7879 UPSTREAM CG12004 DOWNSTREAM CG12003	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3R	17684839	3R_17684839_SNP [dm3] 3R_21859117_SNP [dm6]	G	A	1.315e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11599845	3L_11599845_SNP [dm3] 3L_11606745_SNP [dm6]	T	C	1.317e^-4	0.766	SYNONYMOUS_CODING CG6091
2L	7365708	2L_7365708_SNP [dm3] 2L_7365708_SNP [dm6]	C	T	1.318e^-4	0.766	INTRON Wnt10
3L	7539424	3L_7539424_SNP [dm3] 3L_7546324_SNP [dm6]	C	A	1.319e^-4	0.766	INTERGENIC
X	4537412	X_4537412_SNP [dm3] X_4643379_SNP [dm6]	C	T	1.321e^-4	0.766	INTRON CG3081 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	156485	2R_156485_SNP [dm3] 2R_4268980_SNP [dm6]	G	T	1.324e^-4	0.766	INTERGENIC
3R	10306370	3R_10306370_SNP [dm3] 3R_14480648_SNP [dm6]	A	G	1.325e^-4	0.766	UTR_5_PRIME cv-c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	2646789	3L_2646789_SNP [dm3] 3L_2646789_SNP [dm6]	T	G	1.326e^-4	0.766	UTR_3_PRIME CG1143 DOWNSTREAM CG1143
2R	6588083	2R_6588083_SNP [dm3] 2R_10700578_SNP [dm6]	G	C	1.330e^-4	0.766	INTRON stan
3L	5884838	3L_5884838_SNP [dm3] 3L_5891738_SNP [dm6]	C	A	1.333e^-4	0.766	INTERGENIC
X	10238028	X_10238028_SNP [dm3] X_10343995_SNP [dm6]	T	G	1.338e^-4	0.766	SYNONYMOUS_CODING CG43740	TF binding site mE1_TFBS_HSA
3L	10702270	3L_10702270_SNP [dm3] 3L_10709170_SNP [dm6]	C	A	1.340e^-4	0.766	INTERGENIC
2R	15906467	2R_15906467_SNP [dm3] 2R_20018962_SNP [dm6]	T	C	1.346e^-4	0.766	INTERGENIC
2R	15132491	2R_15132491_SNP [dm3] 2R_19244986_SNP [dm6]	A	G	1.348e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3R	25776027	3R_25776027_INS [dm3] 3R_29950305_INS [dm6]	T	TT	1.358e^-4	0.766	DOWNSTREAM TkR99D INTERGENIC
3L	22701905	3L_22701905_SNP [dm3] 3L_22708805_SNP [dm6]	C	A	1.360e^-4	0.766	INTERGENIC
2R	9147026	2R_9147026_SNP [dm3] 2R_13259521_SNP [dm6]	T	A	1.361e^-4	0.766	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3L	13241445	3L_13241445_SNP [dm3] 3L_13248345_SNP [dm6]	T	C	1.363e^-4	0.766	SYNONYMOUS_CODING CG32119 INTRON caps
3L	2645026	3L_2645026_SNP [dm3] 3L_2645026_SNP [dm6]	T	A	1.371e^-4	0.766	UPSTREAM CG1143 INTERGENIC
2R	13809956	2R_13809956_SNP [dm3] 2R_17922451_SNP [dm6]	C	G	1.372e^-4	0.766	INTRON Elk
3L	4081377	3L_4081377_SNP [dm3] 3L_4081377_SNP [dm6]	G	A	1.376e^-4	0.766	INTRON Gad1
3R	15213950	3R_15213950_SNP [dm3] 3R_19388228_SNP [dm6]	G	A	1.377e^-4	0.766	DOWNSTREAM CR34285 INTRON Ino80 & 1 other	TF binding site mE1_TFBS_sens
3R	15384897	3R_15384897_DEL [dm3] 3R_19559175_DEL [dm6]	TT	T	1.377e^-4	0.766	INTRON Dys
3L	2646919	3L_2646919_SNP [dm3] 3L_2646919_SNP [dm6]	A	C	1.378e^-4	0.766	UTR_3_PRIME CG1143 DOWNSTREAM CG1143
3L	17485970	3L_17485970_SNP [dm3] 3L_17492870_SNP [dm6]	A	C	1.380e^-4	0.766	INTRON Oatp74D
3L	5646471	3L_5646471_SNP [dm3] 3L_5653371_SNP [dm6]	T	G	1.381e^-4	0.766	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2L	1072759	2L_1072759_SNP [dm3] 2L_1072759_SNP [dm6]	A	G	1.387e^-4	0.766	INTRON S
X	12772266	X_12772266_SNP [dm3] X_12878233_SNP [dm6]	T	C	1.389e^-4	0.766	INTRON Pde9
2R	14452456	2R_14452456_SNP [dm3] 2R_18564951_SNP [dm6]	G	A	1.393e^-4	0.766	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	4953916	2R_4953916_SNP [dm3] 2R_9066411_SNP [dm6]	G	T	1.420e^-4	0.774	INTRON ana	regulatory region REDfly_CRMs
2R	11330698	2R_11330698_SNP [dm3] 2R_15443193_SNP [dm6]	G	T	1.427e^-4	0.774	INTRON CG43729
X	11330755	X_11330755_SNP [dm3] X_11436722_SNP [dm6]	G	C	1.432e^-4	0.774	INTRON Evi5
3R	2868309	3R_2868309_SNP [dm3] 3R_7042587_SNP [dm6]	G	A	1.433e^-4	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	18798100	2R_18798100_SNP [dm3] 2R_22910577_SNP [dm6]	G	T	1.434e^-4	0.774	SYNONYMOUS_CODING nahoda
2L	3437649	2L_3437649_SNP [dm3] 2L_3437649_SNP [dm6]	A	T	1.435e^-4	0.774	INTERGENIC
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	1.439e^-4	0.774	EXON CR44950
2L	696649	2L_696649_SNP [dm3] 2L_696649_SNP [dm6]	T	A	1.441e^-4	0.774	INTRON ds	TF binding site mE1_TFBS_Trl
X	4125092	X_4125092_SNP [dm3] X_4231059_SNP [dm6]	T	G	1.449e^-4	0.776	INTERGENIC
3L	11270074	3L_11270074_SNP [dm3] 3L_11276974_SNP [dm6]	A	G	1.468e^-4	0.776	INTERGENIC
3L	10969436	3L_10969436_SNP [dm3] 3L_10976336_SNP [dm6]	A	T	1.480e^-4	0.776	INTERGENIC	TF binding site mE1_TFBS_cad
3L	2536836	3L_2536836_SNP [dm3] 3L_2536836_SNP [dm6]	G	A	1.485e^-4	0.776	UPSTREAM Spn INTRON Spn	TF binding site mE1_TFBS_Trl
2L	7041785	2L_7041785_DEL [dm3] 2L_7041785_DEL [dm6]	GTCG	A	1.488e^-4	0.776	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17899769	X_17899769_DEL [dm3] X_18005736_DEL [dm6]	AAAGG	A	1.490e^-4	0.776	DOWNSTREAM CG12672 INTRON Sh
3R	13570318	3R_13570318_SNP [dm3] 3R_17744596_SNP [dm6]	C	A	1.496e^-4	0.776	INTRON TyrRII	TF binding site mE1_TFBS_cad
X	10765513	X_10765513_SNP [dm3] X_10871480_SNP [dm6]	A	T	1.496e^-4	0.776	DOWNSTREAM CG2157 & 1 other INTRON CG1637	TF binding site mE1_TFBS_sens
3L	5475581	3L_5475581_SNP [dm3] 3L_5482481_SNP [dm6]	G	A	1.496e^-4	0.776	SYNONYMOUS_CODING CG4835
3L	7539454	3L_7539454_SNP [dm3] 3L_7546354_SNP [dm6]	A	C	1.496e^-4	0.776	INTERGENIC
3R	25779128	3R_25779128_SNP [dm3] 3R_29953406_SNP [dm6]	G	A	1.498e^-4	0.776	SYNONYMOUS_CODING TkR99D
3L	9133933	3L_9133933_SNP [dm3] 3L_9140833_SNP [dm6]	T	C	1.501e^-4	0.776	INTRON nwk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26871242	3R_26871242_SNP [dm3] 3R_31045520_SNP [dm6]	G	A	1.516e^-4	0.776	UPSTREAM CG33920 INTRON CanA1
2R	15903566	2R_15903566_SNP [dm3] 2R_20016061_SNP [dm6]	C	G	1.519e^-4	0.776	DOWNSTREAM CR44630 INTERGENIC
3L	2646601	3L_2646601_SNP [dm3] 3L_2646601_SNP [dm6]	T	C	1.519e^-4	0.776	UTR_3_PRIME CG1143	TF binding site mE1_TFBS_cad
2R	19317545	2R_19317545_SNP [dm3] 2R_23430022_SNP [dm6]	G	T	1.523e^-4	0.776	INTRON CG9815
2L	394905	2L_394905_SNP [dm3] 2L_394905_SNP [dm6]	T	G	1.524e^-4	0.776	INTERGENIC
2R	11330036	2R_11330036_SNP [dm3] 2R_15442531_SNP [dm6]	G	C	1.525e^-4	0.776	INTRON CG43729
X	9775935	X_9775935_SNP [dm3] X_9881902_SNP [dm6]	C	T	1.526e^-4	0.776	UPSTREAM CG9689 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	3680552	3L_3680552_SNP [dm3] 3L_3680552_SNP [dm6]	C	T	1.528e^-4	0.776	INTERGENIC	TF binding site mE1_TFBS_cad
3R	2868311	3R_2868311_INS [dm3] 3R_7042589_INS [dm6]	C	CGGA	1.540e^-4	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	22226718	3R_22226718_SNP [dm3] 3R_26400996_SNP [dm6]	A	T	1.549e^-4	0.777	DOWNSTREAM ppk15 INTERGENIC
3R	12898285	3R_12898285_SNP [dm3] 3R_17072563_SNP [dm6]	C	T	1.552e^-4	0.777	UPSTREAM mRpS11 INTRON Ns1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13588778	3R_13588778_SNP [dm3] 3R_17763056_SNP [dm6]	C	A	1.553e^-4	0.777	START_GAINED TyrR UTR_5_PRIME TyrR UPSTREAM TyrR
2R	7680554	2R_7680554_DEL [dm3] 2R_11793049_DEL [dm6]	TGTAT	T	1.555e^-4	0.777	INTRON ths	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_prd
3L	16570370	3L_16570370_SNP [dm3] 3L_16577270_SNP [dm6]	G	A	1.556e^-4	0.777	NON_SYNONYMOUS_CODING nxf2 DOWNSTREAM mbf1	transposable element FlyBase
2R	12278778	2R_12278778_SNP [dm3] 2R_16391273_SNP [dm6]	G	A	1.574e^-4	0.777	INTRON Sema-2b	TF binding site mE1_TFBS_chinmo
3L	14185062	3L_14185062_SNP [dm3] 3L_14191962_SNP [dm6]	T	C	1.575e^-4	0.777	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna
3R	18753175	3R_18753175_SNP [dm3] 3R_22927453_SNP [dm6]	A	C	1.576e^-4	0.777	INTRON klg
3L	1720452	3L_1720452_SNP [dm3] 3L_1720452_SNP [dm6]	T	C	1.628e^-4	0.777	DOWNSTREAM CG18171 INTRON drpr
2R	14015164	2R_14015164_SNP [dm3] 2R_18127659_SNP [dm6]	G	C	1.629e^-4	0.777	UPSTREAM Dip3 INTRON Spn55B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3L	3954116	3L_3954116_SNP [dm3] 3L_3954116_SNP [dm6]	T	A	1.630e^-4	0.777	DOWNSTREAM CG12605 INTERGENIC
2L	735370	2L_735370_SNP [dm3] 2L_735370_SNP [dm6]	C	G	1.634e^-4	0.777	INTERGENIC
X	5534926	X_5534926_SNP [dm3] X_5640893_SNP [dm6]	A	G	1.638e^-4	0.777	INTRON CG42492
3R	2705501	3R_2705501_SNP [dm3] 3R_6879779_SNP [dm6]	T	G	1.641e^-4	0.777	INTRON CR44931	regulatory region FlyBase REDfly_CRMs
2R	4499626	2R_4499626_SNP [dm3] 2R_8612121_SNP [dm6]	A	T	1.643e^-4	0.777	UTR_3_PRIME rgr DOWNSTREAM rgr INTRON CG8642
2R	4499641	2R_4499641_SNP [dm3] 2R_8612136_SNP [dm6]	C	T	1.650e^-4	0.777	UTR_3_PRIME rgr DOWNSTREAM rgr INTRON CG8642
2L	13758027	2L_13758027_SNP [dm3] 2L_13758027_SNP [dm6]	G	A	1.656e^-4	0.777	INTRON TM9SF4
2L	9055498	2L_9055498_SNP [dm3] 2L_9055498_SNP [dm6]	G	T	1.664e^-4	0.777	INTRON CG31708
X	4091094	X_4091094_DEL [dm3] X_4197061_DEL [dm6]	AAA	A	1.668e^-4	0.777	INTRON Fas2
3L	1572762	3L_1572762_SNP [dm3] 3L_1572762_SNP [dm6]	C	T	1.670e^-4	0.777	SYNONYMOUS_CODING CG12004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	13265005	X_13265005_SNP [dm3] X_13370972_SNP [dm6]	G	A	1.677e^-4	0.777	UPSTREAM CG1640 DOWNSTREAM dmrt11E INTRON CG1640	TF binding site BDTNP1_TFBS_dl
3L	6078090	3L_6078090_SNP [dm3] 3L_6084990_SNP [dm6]	T	A	1.678e^-4	0.777	INTRON CG13293
X	18381462	X_18381462_SNP [dm3] X_18487429_SNP [dm6]	T	A	1.681e^-4	0.777	UPSTREAM psh DOWNSTREAM CG15046 INTERGENIC
2L	11401929	2L_11401929_SNP [dm3] 2L_11401929_SNP [dm6]	G	A	1.681e^-4	0.777	INTERGENIC	regulatory region REDfly_CRMs
2R	14007521	2R_14007521_SNP [dm3] 2R_18120016_SNP [dm6]	A	G	1.683e^-4	0.777	SPLICE_SITE_REGION stau INTRON stau	TF binding site mE1_TFBS_cad
2R	20938013	2R_20938013_SNP [dm3] 2R_25050490_SNP [dm6]	T	G	1.691e^-4	0.777	INTRON gsb-n	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4619437	3L_4619437_SNP [dm3] 3L_4619437_SNP [dm6]	A	T	1.706e^-4	0.777	INTRON Src64B
2R	16786743	2R_16786743_SNP [dm3] 2R_20899238_SNP [dm6]	T	C	1.714e^-4	0.777	DOWNSTREAM CR43160 INTRON otp	regulatory region REDfly_CRMs
3L	16491223	3L_16491223_SNP [dm3] 3L_16498123_SNP [dm6]	A	T	1.719e^-4	0.777	INTRON CG43373 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18821060	3R_18821060_SNP [dm3] 3R_22995338_SNP [dm6]	G	A	1.721e^-4	0.777	INTRON Nha2
2R	14007495	2R_14007495_SNP [dm3] 2R_18119990_SNP [dm6]	T	A	1.722e^-4	0.777	INTRON stau	TF binding site mE1_TFBS_cad
3L	9555349	3L_9555349_SNP [dm3] 3L_9562249_SNP [dm6]	A	G	1.724e^-4	0.777	INTRON CG42673
X	7617550	X_7617550_SNP [dm3] X_7723517_SNP [dm6]	T	C	1.724e^-4	0.777	SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	18636060	X_18636060_SNP [dm3] X_18742027_SNP [dm6]	G	T	1.724e^-4	0.777	INTERGENIC
3L	1568339	3L_1568339_SNP [dm3] 3L_1568339_SNP [dm6]	A	G	1.730e^-4	0.777	UPSTREAM CG12004 DOWNSTREAM CG12003 INTRON CG7879	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	2170084	3L_2170084_SNP [dm3] 3L_2170084_SNP [dm6]	A	C	1.735e^-4	0.777	SYNONYMOUS_CODING CG5704 UPSTREAM CG15879
X	5534927	X_5534927_SNP [dm3] X_5640894_SNP [dm6]	A	G	1.737e^-4	0.777	INTRON CG42492
2L	9053262	2L_9053262_SNP [dm3] 2L_9053262_SNP [dm6]	T	A	1.741e^-4	0.777	INTRON CG31708
3R	12898258	3R_12898258_SNP [dm3] 3R_17072536_SNP [dm6]	G	C	1.744e^-4	0.777	UPSTREAM mRpS11 INTRON Ns1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1482735	2L_1482735_SNP [dm3] 2L_1482735_SNP [dm6]	G	C	1.747e^-4	0.777	INTERGENIC
X	16847578	X_16847578_SNP [dm3] X_16953545_SNP [dm6]	T	C	1.747e^-4	0.777	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14018530	2R_14018530_SNP [dm3] 2R_18131025_SNP [dm6]	T	C	1.756e^-4	0.777	SYNONYMOUS_CODING Hsf DOWNSTREAM Dip3
2R	19069773	2R_19069773_SNP [dm3] 2R_23182250_SNP [dm6]	C	T	1.759e^-4	0.777	INTRON CG34371	TF binding site mE1_TFBS_cad
3L	5892978	3L_5892978_SNP [dm3] 3L_5899878_SNP [dm6]	T	C	1.760e^-4	0.777	SYNONYMOUS_CODING CG32409 DOWNSTREAM CG5592 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15589885	3R_15589885_SNP [dm3] 3R_19764163_SNP [dm6]	A	C	1.769e^-4	0.777	INTRON GluClalpha
3R	25912708	3R_25912708_SNP [dm3] 3R_30086986_SNP [dm6]	C	A	1.772e^-4	0.777	INTRON sima
3R	24485802	3R_24485802_SNP [dm3] 3R_28660080_SNP [dm6]	A	G	1.775e^-4	0.777	INTERGENIC
2L	8590460	2L_8590460_SNP [dm3] 2L_8590460_SNP [dm6]	T	A	1.784e^-4	0.777	INTRON Sema-1a EXON CR43855
2L	8447795	2L_8447795_SNP [dm3] 2L_8447795_SNP [dm6]	C	T	1.804e^-4	0.777	SYNONYMOUS_CODING U26 UTR_3_PRIME U26
3R	12970762	3R_12970762_SNP [dm3] 3R_17145040_SNP [dm6]	A	T	1.807e^-4	0.777	UTR_3_PRIME m-cup DOWNSTREAM m-cup
3L	6100299	3L_6100299_SNP [dm3] 3L_6107199_SNP [dm6]	C	T	1.810e^-4	0.777	INTRON Ets65A	TF binding site mE1_TFBS_cad
3L	14185061	3L_14185061_SNP [dm3] 3L_14191961_SNP [dm6]	A	C	1.811e^-4	0.777	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna
2R	12663435	2R_12663435_SNP [dm3] 2R_16775930_SNP [dm6]	T	A	1.815e^-4	0.777	DOWNSTREAM Arp53D INTERGENIC
2R	1694463	2R_1694463_INS [dm3] 2R_5806958_INS [dm6]	A	AGCTCCGAGCTCA...	1.823e^-4	0.777	INTRON dpr12	TF binding site BDTNP1_TFBS_prd
2L	2081492	2L_2081492_SNP [dm3] 2L_2081492_SNP [dm6]	G	C	1.823e^-4	0.777	UPSTREAM CR44808 DOWNSTREAM CG12674 INTRON dpr3
2L	20685197	2L_20685197_SNP [dm3] 2L_20685197_SNP [dm6]	T	C	1.824e^-4	0.777	UTR_3_PRIME Hr38
X	6439088	X_6439088_SNP [dm3] X_6545055_SNP [dm6]	G	A	1.831e^-4	0.777	INTRON CG34417
3L	5887955	3L_5887955_SNP [dm3] 3L_5894855_SNP [dm6]	T	G	1.831e^-4	0.777	DOWNSTREAM Pole2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9636519	3L_9636519_SNP [dm3] 3L_9643419_SNP [dm6]	A	T	1.836e^-4	0.777	UPSTREAM CG33696 INTRON fry
X	9843864	X_9843864_SNP [dm3] X_9949831_SNP [dm6]	G	A	1.839e^-4	0.777	INTERGENIC
2R	10348395	2R_10348395_SNP [dm3] 2R_14460890_SNP [dm6]	C	A	1.847e^-4	0.777	INTRON Oaz	TF binding site mE1_TFBS_cad
X	12793521	X_12793521_SNP [dm3] X_12899488_SNP [dm6]	T	A	1.849e^-4	0.777	UPSTREAM CG32650 INTRON CG32649	TF binding site mE1_TFBS_chinmo
3L	15208841	3L_15208841_SNP [dm3] 3L_15215741_SNP [dm6]	T	C	1.850e^-4	0.777	INTERGENIC
X	5229317	X_5229317_SNP [dm3] X_5335284_SNP [dm6]	C	T	1.855e^-4	0.777	DOWNSTREAM CanB INTERGENIC
2R	6669458	2R_6669458_SNP [dm3] 2R_10781953_SNP [dm6]	T	A	1.855e^-4	0.777	UPSTREAM CR44299 INTRON CG33144	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	6123043	2L_6123043_SNP [dm3] 2L_6123043_SNP [dm6]	C	T	1.874e^-4	0.777	SYNONYMOUS_CODING stai
3R	19325039	3R_19325039_SNP [dm3] 3R_23499317_SNP [dm6]	T	C	1.888e^-4	0.777	INTERGENIC
3L	4709828	3L_4709828_SNP [dm3] 3L_4709828_SNP [dm6]	C	T	1.890e^-4	0.777	NON_SYNONYMOUS_CODING CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8448106	2L_8448106_SNP [dm3] 2L_8448106_SNP [dm6]	G	A	1.894e^-4	0.777	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	2763017	2R_2763017_SNP [dm3] 2R_6875512_SNP [dm6]	A	T	1.897e^-4	0.777	SYNONYMOUS_CODING CG9447 DOWNSTREAM Spn42Da INTRON CR44169 EXON CR44169	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18575735	3L_18575735_SNP [dm3] 3L_18582635_SNP [dm6]	C	A	1.907e^-4	0.777	UPSTREAM CR45435 INTERGENIC
2L	2861554	2L_2861554_SNP [dm3] 2L_2861554_SNP [dm6]	A	G	1.912e^-4	0.777	UPSTREAM CG2991 INTRON CG2991	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3L	2645044	3L_2645044_SNP [dm3] 3L_2645044_SNP [dm6]	T	G	1.919e^-4	0.777	UPSTREAM CG1143 INTERGENIC
X	5514246	X_5514246_SNP [dm3] X_5620213_SNP [dm6]	A	G	1.922e^-4	0.777	SYNONYMOUS_CODING Mlc-c
2R	15459606	2R_15459606_SNP [dm3] 2R_19572101_SNP [dm6]	T	G	1.922e^-4	0.777	INTRON sm
3L	11223911	3L_11223911_SNP [dm3] 3L_11230811_SNP [dm6]	C	T	1.927e^-4	0.777	DOWNSTREAM CR45405 & 1 other INTERGENIC
3L	14835275	3L_14835275_INS [dm3] 3L_14842175_INS [dm6]	T	TTGCAA	1.941e^-4	0.777	INTRON CG17839
3L	7539437	3L_7539437_SNP [dm3] 3L_7546337_SNP [dm6]	G	T	1.947e^-4	0.777	INTERGENIC
3L	7539451	3L_7539451_SNP [dm3] 3L_7546351_SNP [dm6]	T	A	1.947e^-4	0.777	INTERGENIC
2L	14666738	2L_14666738_SNP [dm3] 2L_14666738_SNP [dm6]	G	A	1.949e^-4	0.777	INTRON osp
2L	13852491	2L_13852491_DEL [dm3] 2L_13852491_DEL [dm6]	GTG	G	1.951e^-4	0.777	INTRON CenG1A
3L	16202299	3L_16202299_SNP [dm3] 3L_16209199_SNP [dm6]	C	T	1.952e^-4	0.777	INTERGENIC	TF binding site mE1_TFBS_cad
2L	5502565	2L_5502565_SNP [dm3] 2L_5502565_SNP [dm6]	T	A	1.960e^-4	0.777	INTERGENIC	TF binding site mE1_TFBS_cad
X	12355375	X_12355375_SNP [dm3] X_12461342_SNP [dm6]	T	C	1.968e^-4	0.777	INTRON Rab40
X	19355948	X_19355948_SNP [dm3] X_19461915_SNP [dm6]	A	T	1.972e^-4	0.777	INTRON kek5
X	12355302	X_12355302_SNP [dm3] X_12461269_SNP [dm6]	A	G	1.973e^-4	0.777	INTRON Rab40
2R	8371767	2R_8371767_SNP [dm3] 2R_12484262_SNP [dm6]	T	A	1.977e^-4	0.777	INTRON Dh44-R2
3L	1564689	3L_1564689_SNP [dm3] 3L_1564689_SNP [dm6]	T	C	1.977e^-4	0.777	UPSTREAM CG12003 INTRON CG7879
3L	11525398	3L_11525398_SNP [dm3] 3L_11532298_SNP [dm6]	C	T	1.979e^-4	0.777	INTRON Mob2
3R	10488924	3R_10488924_SNP [dm3] 3R_14663202_SNP [dm6]	C	T	1.981e^-4	0.777	UPSTREAM BigH1 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	502675	3L_502675_SNP [dm3] 3L_502675_SNP [dm6]	T	C	1.987e^-4	0.777	INTRON klar
3L	2395045	3L_2395045_SNP [dm3] 3L_2395045_SNP [dm6]	T	G	1.989e^-4	0.777	INTRON CG45186
X	8344770	X_8344770_DEL [dm3] X_8450737_DEL [dm6]	TGTGTATT	T	1.992e^-4	0.777	INTRON org-1
2R	7558119	2R_7558119_SNP [dm3] 2R_11670614_SNP [dm6]	C	T	1.995e^-4	0.777	INTRON Roc2 & 1 other
X	5251231	X_5251231_SNP [dm3] X_5357198_SNP [dm6]	G	A	1.995e^-4	0.777	INTRON SK
X	10462831	X_10462831_SNP [dm3] X_10568798_SNP [dm6]	G	C	1.995e^-4	0.777	INTRON spri
3L	2645067	3L_2645067_SNP [dm3] 3L_2645067_SNP [dm6]	C	T	1.996e^-4	0.777	UPSTREAM CG1143 INTERGENIC
2R	14141492	2R_14141492_SNP [dm3] 2R_18253987_SNP [dm6]	C	T	1.996e^-4	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26633914	3R_26633914_SNP [dm3] 3R_30808192_SNP [dm6]	G	C	2.008e^-4	0.777	UPSTREAM cindr DOWNSTREAM dj-1beta INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
X	13828560	X_13828560_SNP [dm3] X_13934527_SNP [dm6]	C	A	2.013e^-4	0.777	INTRON mamo	TF binding site mE1_TFBS_HSA
3L	9040814	3L_9040814_SNP [dm3] 3L_9047714_SNP [dm6]	C	A	2.015e^-4	0.777	SYNONYMOUS_CODING CG5144	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sens
3L	4619365	3L_4619365_SNP [dm3] 3L_4619365_SNP [dm6]	C	T	2.019e^-4	0.777	INTRON Src64B
2R	15903576	2R_15903576_SNP [dm3] 2R_20016071_SNP [dm6]	T	G	2.023e^-4	0.777	DOWNSTREAM CR44630 INTERGENIC
3R	17684793	3R_17684793_SNP [dm3] 3R_21859071_SNP [dm6]	A	C	2.025e^-4	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10417946	2R_10417946_DEL [dm3] 2R_14530441_DEL [dm6]	TTTAATTTTACT...	T	2.028e^-4	0.777	INTRON ttv
3L	428290	3L_428290_SNP [dm3] 3L_428290_SNP [dm6]	C	T	2.028e^-4	0.777	INTERGENIC
3L	4159131	3L_4159131_DEL [dm3] 3L_4159131_DEL [dm6]	GG	G	2.029e^-4	0.777	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3R	6385538	3R_6385538_SNP [dm3] 3R_10559816_SNP [dm6]	G	A	2.035e^-4	0.777	INTRON hth	TF binding site BDTNP1_TFBS_dl
3L	7539445	3L_7539445_SNP [dm3] 3L_7546345_SNP [dm6]	A	G	2.048e^-4	0.777	INTERGENIC
2R	19073621	2R_19073621_SNP [dm3] 2R_23186098_SNP [dm6]	G	C	2.048e^-4	0.777	DOWNSTREAM CG13539 INTRON CG34371
2L	9988714	2L_9988714_INS [dm3] 2L_9988714_INS [dm6]	C	CTC	2.049e^-4	0.777	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	16014970	2L_16014970_SNP [dm3] 2L_16014970_SNP [dm6]	T	C	2.051e^-4	0.777	INTRON beat-Ic
2R	14341358	2R_14341358_SNP [dm3] 2R_18453853_SNP [dm6]	C	T	2.051e^-4	0.777	NON_SYNONYMOUS_CODING CG17669	TF binding site mE1_TFBS_cad
2R	7434751	2R_7434751_SNP [dm3] 2R_11547246_SNP [dm6]	C	G	2.054e^-4	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	4025737	3L_4025737_SNP [dm3] 3L_4025737_SNP [dm6]	G	A	2.055e^-4	0.777	UTR_5_PRIME CG11594 UPSTREAM CG11594 INTRON CG11594
X	15985305	X_15985305_SNP [dm3] X_16091272_SNP [dm6]	C	G	2.070e^-4	0.777	UTR_5_PRIME Tob	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	9556506	2R_9556506_SNP [dm3] 2R_13669001_SNP [dm6]	G	T	2.071e^-4	0.777	NON_SYNONYMOUS_CODING CG18368 INTRON fas	TF binding site BDTNP1_TFBS_twi
2L	7057433	2L_7057433_SNP [dm3] 2L_7057433_SNP [dm6]	C	T	2.072e^-4	0.777	SYNONYMOUS_CODING Mnn1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6340006	3R_6340006_SNP [dm3] 3R_10514284_SNP [dm6]	G	A	2.080e^-4	0.777	SYNONYMOUS_CODING hth	TF binding site mE1_TFBS_cad
2L	8702856	2L_8702856_SNP [dm3] 2L_8702856_SNP [dm6]	A	T	2.084e^-4	0.777	UPSTREAM CR44992 INTRON Hnf4
3L	11838534	3L_11838534_SNP [dm3] 3L_11845434_SNP [dm6]	G	C	2.087e^-4	0.777	INTERGENIC
3L	11946333	3L_11946333_SNP [dm3] 3L_11953233_SNP [dm6]	C	A	2.093e^-4	0.777	NON_SYNONYMOUS_CODING obst-G UPSTREAM CG7248
2R	16421929	2R_16421929_SNP [dm3] 2R_20534424_SNP [dm6]	C	T	2.095e^-4	0.777	UTR_5_PRIME CG18067 UPSTREAM CG18067 DOWNSTREAM CG30154
2R	14545030	2R_14545030_SNP [dm3] 2R_18657525_SNP [dm6]	T	C	2.095e^-4	0.777	DOWNSTREAM Gint3 & 1 other INTRON SP2637
3L	18274979	3L_18274979_SNP [dm3] 3L_18281879_SNP [dm6]	C	A	2.101e^-4	0.777	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11128731	2R_11128731_SNP [dm3] 2R_15241226_SNP [dm6]	A	G	2.103e^-4	0.777	UTR_5_PRIME Fs
3L	4004096	3L_4004096_SNP [dm3] 3L_4004096_SNP [dm6]	G	T	2.103e^-4	0.777	INTRON CG14985
X	14841922	X_14841922_SNP [dm3] X_14947889_SNP [dm6]	G	A	2.106e^-4	0.777	INTRON pdgy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7434800	2R_7434800_SNP [dm3] 2R_11547295_SNP [dm6]	T	A	2.109e^-4	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	10368009	2R_10368009_SNP [dm3] 2R_14480504_SNP [dm6]	C	T	2.111e^-4	0.777	UPSTREAM L INTERGENIC	TF binding site mE1_TFBS_bab1
2L	1675714	2L_1675714_SNP [dm3] 2L_1675714_SNP [dm6]	T	A	2.125e^-4	0.777	INTRON chinmo
2L	1675720	2L_1675720_SNP [dm3] 2L_1675720_SNP [dm6]	C	G	2.125e^-4	0.777	INTRON chinmo
3R	16722436	3R_16722436_SNP [dm3] 3R_20896714_SNP [dm6]	C	T	2.126e^-4	0.777	SYNONYMOUS_CODING CG10830	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1072838	2L_1072838_SNP [dm3] 2L_1072838_SNP [dm6]	T	G	2.129e^-4	0.777	INTRON S
3L	2344403	3L_2344403_SNP [dm3] 3L_2344403_SNP [dm6]	A	T	2.132e^-4	0.777	UTR_3_PRIME MsR1
2R	8934019	2R_8934019_SNP [dm3] 2R_13046514_SNP [dm6]	T	G	2.132e^-4	0.777	UTR_3_PRIME CG13323 DOWNSTREAM CG13323
3L	16535979	3L_16535979_SNP [dm3] 3L_16542879_SNP [dm6]	G	C	2.137e^-4	0.777	INTRON CG43373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7517430	3L_7517430_SNP [dm3] 3L_7524330_SNP [dm6]	C	A	2.140e^-4	0.777	INTRON ltl
X	3381344	X_3381344_SNP [dm3] X_3487311_SNP [dm6]	T	C	2.142e^-4	0.777	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_sens
2R	12116819	2R_12116819_SNP [dm3] 2R_16229314_SNP [dm6]	A	G	2.142e^-4	0.777	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	7620883	X_7620883_SNP [dm3] X_7726850_SNP [dm6]	G	A	2.143e^-4	0.777	SYNONYMOUS_CODING NELF-B DOWNSTREAM Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2170090	3L_2170090_SNP [dm3] 3L_2170090_SNP [dm6]	A	G	2.147e^-4	0.777	SYNONYMOUS_CODING CG5704 UPSTREAM CG15879
2R	7558037	2R_7558037_SNP [dm3] 2R_11670532_SNP [dm6]	C	G	2.147e^-4	0.777	INTRON Roc2 & 1 other
3L	11184085	3L_11184085_SNP [dm3] 3L_11190985_SNP [dm6]	T	C	2.150e^-4	0.777	INTRON GlcAT-P
3R	25364751	3R_25364751_SNP [dm3] 3R_29539029_SNP [dm6]	T	C	2.160e^-4	0.777	INTERGENIC
2L	15959973	2L_15959973_SNP [dm3] 2L_15959973_SNP [dm6]	G	A	2.165e^-4	0.777	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
3R	14825235	3R_14825235_SNP [dm3] 3R_18999513_SNP [dm6]	A	G	2.169e^-4	0.777	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9147400	2R_9147400_SNP [dm3] 2R_13259895_SNP [dm6]	A	G	2.175e^-4	0.777	UPSTREAM CG42319 INTERGENIC
X	14679288	X_14679288_SNP [dm3] X_14785255_SNP [dm6]	T	C	2.177e^-4	0.777	UTR_3_PRIME Ag5r
2L	21705849	2L_21705849_SNP [dm3] 2L_21705849_SNP [dm6]	T	G	2.184e^-4	0.777	INTRON CG31619	transposable element FlyBase
3L	10895775	3L_10895775_SNP [dm3] 3L_10902675_SNP [dm6]	T	C	2.189e^-4	0.777	INTERGENIC
X	9942512	X_9942512_SNP [dm3] X_10048479_SNP [dm6]	G	A	2.190e^-4	0.777	NON_SYNONYMOUS_CODING Cht6 UPSTREAM CR45185 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3R	3414129	3R_3414129_SNP [dm3] 3R_7588407_SNP [dm6]	G	C	2.194e^-4	0.777	INTRON CG34127
3L	4737856	3L_4737856_SNP [dm3] 3L_4737856_SNP [dm6]	G	T	2.200e^-4	0.777	INTRON RhoGEF64C
2R	14341704	2R_14341704_SNP [dm3] 2R_18454199_SNP [dm6]	T	C	2.207e^-4	0.777	SYNONYMOUS_CODING CG17669	TF binding site mE1_TFBS_cad
3L	3874495	3L_3874495_SNP [dm3] 3L_3874495_SNP [dm6]	T	C	2.210e^-4	0.777	INTERGENIC
3L	1179490	3L_1179490_SNP [dm3] 3L_1179490_SNP [dm6]	G	T	2.212e^-4	0.777	INTERGENIC
3R	9823760	3R_9823760_SNP [dm3] 3R_13998038_SNP [dm6]	T	C	2.214e^-4	0.777	INTRON rdx	TF binding site mE1_TFBS_HSA
3L	2645041	3L_2645041_SNP [dm3] 3L_2645041_SNP [dm6]	G	T	2.216e^-4	0.777	UPSTREAM CG1143 INTERGENIC
3L	4426085	3L_4426085_SNP [dm3] 3L_4426085_SNP [dm6]	T	C	2.216e^-4	0.777	SYNONYMOUS_CODING CG15020
3L	11275819	3L_11275819_SNP [dm3] 3L_11282719_SNP [dm6]	T	C	2.222e^-4	0.777	INTERGENIC
3L	11020859	3L_11020859_SNP [dm3] 3L_11027759_SNP [dm6]	T	A	2.222e^-4	0.777	DOWNSTREAM CG32079 INTRON CG32081
3R	10496273	3R_10496273_SNP [dm3] 3R_14670551_SNP [dm6]	G	A	2.234e^-4	0.777	SYNONYMOUS_CODING Meltrin	TF binding site mE1_TFBS_cad
X	15182133	X_15182133_SNP [dm3] X_15288100_SNP [dm6]	C	G	2.234e^-4	0.777	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	428193	3L_428193_SNP [dm3] 3L_428193_SNP [dm6]	T	G	2.241e^-4	0.777	INTERGENIC
3R	9773995	3R_9773995_SNP [dm3] 3R_13948273_SNP [dm6]	T	A	2.259e^-4	0.777	UPSTREAM CG31517 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	13417584	2L_13417584_SNP [dm3] 2L_13417584_SNP [dm6]	C	T	2.261e^-4	0.777	INTRON CG43850 & 1 other
X	10544076	X_10544076_SNP [dm3] X_10650043_SNP [dm6]	C	T	2.261e^-4	0.777	INTRON X11Lbeta
3L	7369219	3L_7369219_SNP [dm3] 3L_7376119_SNP [dm6]	G	C	2.261e^-4	0.777	INTRON SMSr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	3471298	2R_3471298_SNP [dm3] 2R_7583793_SNP [dm6]	T	C	2.267e^-4	0.777	INTRON blow
2R	20946369	2R_20946369_SNP [dm3] 2R_25058846_SNP [dm6]	C	T	2.280e^-4	0.777	INTERGENIC	regulatory region FlyBase REDfly_CRMs
2L	3946095	2L_3946095_SNP [dm3] 2L_3946095_SNP [dm6]	C	G	2.282e^-4	0.777	INTRON fred
2R	15843770	2R_15843770_SNP [dm3] 2R_19956265_SNP [dm6]	G	A	2.289e^-4	0.777	UTR_5_PRIME CG44623
2L	7000929	2L_7000929_SNP [dm3] 2L_7000929_SNP [dm6]	T	A	2.290e^-4	0.777	INTRON uif
3R	15767069	3R_15767069_SNP [dm3] 3R_19941347_SNP [dm6]	G	A	2.292e^-4	0.777	INTRON Hs6st
3R	17183948	3R_17183948_SNP [dm3] 3R_21358226_SNP [dm6]	T	G	2.293e^-4	0.777	UTR_5_PRIME pre-mod_mdg4_-J & 3 others UTR_3_PRIME pre-mod_mdg4_-K DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_ & 1 other
2L	12033089	2L_12033089_SNP [dm3] 2L_12033089_SNP [dm6]	C	T	2.299e^-4	0.777	SYNONYMOUS_CODING dmGlut	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4534444	3L_4534444_SNP [dm3] 3L_4534444_SNP [dm6]	C	A	2.310e^-4	0.777	INTRON CG11353
3L	11279045	3L_11279045_INS [dm3] 3L_11285945_INS [dm6]	T	TACAT	2.311e^-4	0.777	DOWNSTREAM CR45404 INTERGENIC
3L	9133908	3L_9133908_SNP [dm3] 3L_9140808_SNP [dm6]	C	G	2.314e^-4	0.777	INTRON nwk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	11756868	X_11756868_SNP [dm3] X_11862835_SNP [dm6]	G	T	2.316e^-4	0.777	SYNONYMOUS_CODING ATP7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11269498	3L_11269498_INS [dm3] 3L_11276398_INS [dm6]	A	AA	2.318e^-4	0.777	INTERGENIC
3R	12566228	3R_12566228_SNP [dm3] 3R_16740506_SNP [dm6]	G	A	2.322e^-4	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3L	4647394	3L_4647394_SNP [dm3] 3L_4647394_SNP [dm6]	T	C	2.327e^-4	0.777	UPSTREAM CG32238 INTRON axo
3R	25779211	3R_25779211_SNP [dm3] 3R_29953489_SNP [dm6]	G	A	2.330e^-4	0.777	SPLICE_SITE_REGION TkR99D INTRON TkR99D
2R	8372456	2R_8372456_SNP [dm3] 2R_12484951_SNP [dm6]	C	T	2.333e^-4	0.777	INTRON Dh44-R2
2L	2081474	2L_2081474_SNP [dm3] 2L_2081474_SNP [dm6]	A	G	2.334e^-4	0.777	UPSTREAM CR44808 DOWNSTREAM CG12674 INTRON dpr3
X	6477066	X_6477066_SNP [dm3] X_6583033_SNP [dm6]	A	G	2.339e^-4	0.777	SYNONYMOUS_CODING CG34417 INTRON CG34417
2R	593366	2R_593366_DEL [dm3] 2R_4705861_DEL [dm6]	AA	A	2.339e^-4	0.777	INTRON Nipped-B	transposable element FlyBase
3L	11722674	3L_11722674_SNP [dm3] 3L_11729574_SNP [dm6]	T	C	2.347e^-4	0.777	SYNONYMOUS_CODING CG32088
3L	1563914	3L_1563914_DEL [dm3] 3L_1563914_DEL [dm6]	GA	G	2.351e^-4	0.777	INTRON CG7879	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	18112916	3L_18112916_SNP [dm3] 3L_18119816_SNP [dm6]	A	C	2.352e^-4	0.777	UTR_5_PRIME CG7341 DOWNSTREAM CG32195	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17790175	2L_17790175_SNP [dm3] 2L_17790175_SNP [dm6]	G	A	2.356e^-4	0.777	INTRON CadN2
3L	722590	3L_722590_SNP [dm3] 3L_722590_SNP [dm6]	A	T	2.358e^-4	0.777	INTERGENIC
2L	5989951	2L_5989951_SNP [dm3] 2L_5989951_SNP [dm6]	T	A	2.358e^-4	0.777	UTR_3_PRIME lid DOWNSTREAM lid
2L	9438552	2L_9438552_SNP [dm3] 2L_9438552_SNP [dm6]	C	T	2.362e^-4	0.777	INTRON numb	TF binding site BDTNP1_TFBS_dl
3R	2705648	3R_2705648_SNP [dm3] 3R_6879926_SNP [dm6]	G	T	2.366e^-4	0.777	INTRON CR44931	regulatory region FlyBase REDfly_CRMs
X	10569471	X_10569471_SNP [dm3] X_10675438_SNP [dm6]	A	C	2.367e^-4	0.777	INTRON X11Lbeta
3R	4340520	3R_4340520_SNP [dm3] 3R_8514798_SNP [dm6]	T	A	2.367e^-4	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	9556484	2R_9556484_SNP [dm3] 2R_13668979_SNP [dm6]	T	A	2.369e^-4	0.777	SYNONYMOUS_CODING CG18368 INTRON fas	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	19318944	3L_19318944_SNP [dm3] 3L_19325844_SNP [dm6]	A	C	2.371e^-4	0.777	INTRON pip
2R	11080876	2R_11080876_SNP [dm3] 2R_15193371_SNP [dm6]	C	T	2.383e^-4	0.777	UPSTREAM Sfp51E DOWNSTREAM CG43829 INTERGENIC
2L	648426	2L_648426_SNP [dm3] 2L_648426_SNP [dm6]	C	T	2.398e^-4	0.777	INTRON ds
2L	9438574	2L_9438574_SNP [dm3] 2L_9438574_SNP [dm6]	A	T	2.402e^-4	0.777	INTRON numb	TF binding site BDTNP1_TFBS_dl
3L	18483086	3L_18483086_SNP [dm3] 3L_18489986_SNP [dm6]	A	G	2.406e^-4	0.777	INTRON AstC-R2
2L	17782570	2L_17782570_SNP [dm3] 2L_17782570_SNP [dm6]	C	T	2.407e^-4	0.777	INTERGENIC
2L	17333598	2L_17333598_SNP [dm3] 2L_17333598_SNP [dm6]	G	A	2.407e^-4	0.777	INTERGENIC
X	3377694	X_3377694_SNP [dm3] X_3483661_SNP [dm6]	G	A	2.411e^-4	0.777	SYNONYMOUS_CODING CG10802 DOWNSTREAM CG14270 INTRON CR44999	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	3483455	X_3483455_SNP [dm3] X_3589422_SNP [dm6]	T	C	2.412e^-4	0.777	INTRON AstA-R1
2R	15903577	2R_15903577_SNP [dm3] 2R_20016072_SNP [dm6]	T	G	2.416e^-4	0.777	DOWNSTREAM CR44630 INTERGENIC
X	11330770	X_11330770_DEL [dm3] X_11436737_DEL [dm6]	AT	A	2.416e^-4	0.777	INTRON Evi5
X	20727078	X_20727078_SNP [dm3] X_20856051_SNP [dm6]	A	C	2.420e^-4	0.777	INTRON shakB
3L	14816170	3L_14816170_SNP [dm3] 3L_14823070_SNP [dm6]	A	T	2.421e^-4	0.777	INTRON CG17839
3R	27100391	3R_27100391_DEL [dm3] 3R_31274669_DEL [dm6]	AA	A	2.425e^-4	0.777	INTERGENIC
3L	602453	3L_602453_SNP [dm3] 3L_602453_SNP [dm6]	T	C	2.426e^-4	0.777	INTRON CG13893
2R	1602240	2R_1602240_SNP [dm3] 2R_5714735_SNP [dm6]	A	C	2.441e^-4	0.777	INTRON ap
2L	6194646	2L_6194646_SNP [dm3] 2L_6194646_SNP [dm6]	G	C	2.445e^-4	0.777	INTRON CG34380	TF binding site mE1_TFBS_chinmo
3R	10435018	3R_10435018_SNP [dm3] 3R_14609296_SNP [dm6]	T	G	2.448e^-4	0.777	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	5826390	X_5826390_SNP [dm3] X_5932357_SNP [dm6]	G	T	2.449e^-4	0.777	INTRON CG3726
2R	9147063	2R_9147063_SNP [dm3] 2R_13259558_SNP [dm6]	G	A	2.452e^-4	0.777	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2L	21788478	2L_21788478_SNP [dm3] 2L_21788478_SNP [dm6]	G	A	2.453e^-4	0.777	INTRON CG31612
X	4120251	X_4120251_SNP [dm3] X_4226218_SNP [dm6]	C	G	2.462e^-4	0.777	INTERGENIC
2R	16597786	2R_16597786_SNP [dm3] 2R_20710281_SNP [dm6]	T	C	2.462e^-4	0.777	INTRON dpr
2L	7522021	2L_7522021_SNP [dm3] 2L_7522021_SNP [dm6]	T	C	2.463e^-4	0.777	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	11168943	3L_11168943_SNP [dm3] 3L_11175843_SNP [dm6]	A	G	2.475e^-4	0.78	UTR_3_PRIME CG14142	TF binding site mE1_TFBS_cad
3L	11276624	3L_11276624_SNP [dm3] 3L_11283524_SNP [dm6]	G	A	2.488e^-4	0.781	INTERGENIC
3R	21141048	3R_21141048_SNP [dm3] 3R_25315326_SNP [dm6]	G	T	2.490e^-4	0.781	INTRON CG10559
3L	4619367	3L_4619367_SNP [dm3] 3L_4619367_SNP [dm6]	G	A	2.492e^-4	0.781	INTRON Src64B
2L	19480302	2L_19480302_SNP [dm3] 2L_19480302_SNP [dm6]	A	C	2.505e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	9489608	X_9489608_SNP [dm3] X_9595575_SNP [dm6]	G	A	2.508e^-4	0.781	DOWNSTREAM CR45543 INTERGENIC
2R	17779937	2R_17779937_SNP [dm3] 2R_21892432_SNP [dm6]	G	T	2.512e^-4	0.781	INTRON Fili
X	17952263	X_17952263_SNP [dm3] X_18058230_SNP [dm6]	A	G	2.517e^-4	0.781	INTRON Sh
2L	6194631	2L_6194631_SNP [dm3] 2L_6194631_SNP [dm6]	T	A	2.520e^-4	0.781	INTRON CG34380	TF binding site mE1_TFBS_chinmo
2R	2432779	2R_2432779_SNP [dm3] 2R_6545274_SNP [dm6]	G	A	2.525e^-4	0.781	INTRON jing	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17264663	X_17264663_SNP [dm3] X_17370630_SNP [dm6]	A	T	2.533e^-4	0.781	INTERGENIC
X	5489798	X_5489798_SNP [dm3] X_5595765_SNP [dm6]	A	T	2.536e^-4	0.781	INTRON Vsx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	19506075	2L_19506075_SNP [dm3] 2L_19506075_SNP [dm6]	G	C	2.536e^-4	0.781	SYNONYMOUS_CODING CG10188	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	11040219	3L_11040219_SNP [dm3] 3L_11047119_SNP [dm6]	A	T	2.543e^-4	0.781	UPSTREAM CG43693 INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	4490935	X_4490935_SNP [dm3] X_4596902_SNP [dm6]	T	C	2.545e^-4	0.781	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	7617315	X_7617315_SNP [dm3] X_7723282_SNP [dm6]	C	T	2.548e^-4	0.781	SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13600041	3R_13600041_SNP [dm3] 3R_17774319_SNP [dm6]	C	T	2.554e^-4	0.781	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3L	2862370	3L_2862370_SNP [dm3] 3L_2862370_SNP [dm6]	G	T	2.564e^-4	0.781	INTRON CG43444
3R	5423421	3R_5423421_SNP [dm3] 3R_9597699_SNP [dm6]	T	C	2.564e^-4	0.781	INTRON CG8312
3L	4545922	3L_4545922_SNP [dm3] 3L_4545922_SNP [dm6]	G	A	2.566e^-4	0.781	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12008608	2R_12008608_SNP [dm3] 2R_16121103_SNP [dm6]	G	A	2.571e^-4	0.781	SYNONYMOUS_CODING Jhe	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
X	18196635	X_18196635_DEL [dm3] X_18302602_DEL [dm6]	TTATCATCAT	T	2.571e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_Kr
2L	4026573	2L_4026573_SNP [dm3] 2L_4026573_SNP [dm6]	T	C	2.574e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_sens
2L	12661118	2L_12661118_INS [dm3] 2L_12661118_INS [dm6]	A	ATTAA	2.577e^-4	0.781	INTRON pdm2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	11654717	2L_11654717_SNP [dm3] 2L_11654717_SNP [dm6]	G	A	2.586e^-4	0.781	DOWNSTREAM CG4983 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	4088847	X_4088847_SNP [dm3] X_4194814_SNP [dm6]	T	G	2.586e^-4	0.781	INTRON Fas2
3R	12898282	3R_12898282_SNP [dm3] 3R_17072560_SNP [dm6]	A	G	2.588e^-4	0.781	UPSTREAM mRpS11 INTRON Ns1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11634641	2R_11634641_SNP [dm3] 2R_15747136_SNP [dm6]	A	T	2.597e^-4	0.781	INTRON CG30089	TF binding site mE1_TFBS_cad
3L	9397213	3L_9397213_SNP [dm3] 3L_9404113_SNP [dm6]	G	C	2.608e^-4	0.781	UPSTREAM Cpr67B INTERGENIC
3L	11167610	3L_11167610_SNP [dm3] 3L_11174510_SNP [dm6]	A	T	2.617e^-4	0.781	INTRON CG14142
X	19871664	X_19871664_SNP [dm3] X_19977631_SNP [dm6]	C	G	2.619e^-4	0.781	INTERGENIC
3L	7467600	3L_7467600_SNP [dm3] 3L_7474500_SNP [dm6]	T	C	2.629e^-4	0.781	INTERGENIC
X	14090881	X_14090881_SNP [dm3] X_14196848_SNP [dm6]	T	C	2.630e^-4	0.781	SYNONYMOUS_CODING yl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12449194	3L_12449194_SNP [dm3] 3L_12456094_SNP [dm6]	A	G	2.641e^-4	0.781	INTERGENIC
3R	23115136	3R_23115136_SNP [dm3] 3R_27289414_SNP [dm6]	G	T	2.647e^-4	0.781	SYNONYMOUS_CODING Hmu UPSTREAM bigmax	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	25617852	3R_25617852_SNP [dm3] 3R_29792130_SNP [dm6]	G	C	2.651e^-4	0.781	NON_SYNONYMOUS_CODING kay	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12376155	3L_12376155_SNP [dm3] 3L_12383055_SNP [dm6]	G	A	2.653e^-4	0.781	INTRON Ncc69
2R	16253788	2R_16253788_SNP [dm3] 2R_20366283_SNP [dm6]	A	T	2.655e^-4	0.781	INTERGENIC
2R	14545077	2R_14545077_SNP [dm3] 2R_18657572_SNP [dm6]	G	A	2.661e^-4	0.781	DOWNSTREAM Gint3 & 1 other INTRON SP2637
2R	16311468	2R_16311468_SNP [dm3] 2R_20423963_SNP [dm6]	T	G	2.664e^-4	0.781	UPSTREAM CG12484 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	11327929	2R_11327929_SNP [dm3] 2R_15440424_SNP [dm6]	G	T	2.672e^-4	0.781	INTRON CG43729
3R	13922099	3R_13922099_SNP [dm3] 3R_18096377_SNP [dm6]	G	C	2.674e^-4	0.781	SYNONYMOUS_CODING sr
3R	10435009	3R_10435009_SNP [dm3] 3R_14609287_SNP [dm6]	C	A	2.674e^-4	0.781	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	11756604	X_11756604_SNP [dm3] X_11862571_SNP [dm6]	T	C	2.684e^-4	0.781	SYNONYMOUS_CODING ATP7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11337397	2L_11337397_SNP [dm3] 2L_11337397_SNP [dm6]	G	T	2.691e^-4	0.781	INTERGENIC
3L	11269583	3L_11269583_SNP [dm3] 3L_11276483_SNP [dm6]	T	C	2.693e^-4	0.781	INTERGENIC
2L	20433190	2L_20433190_DEL [dm3] 2L_20433190_DEL [dm6]	GG	G	2.694e^-4	0.781	INTRON CG31688
2R	12425650	2R_12425650_DEL [dm3] 2R_16538145_DEL [dm6]	TATGCACTTATTGCATGAAT...	T	2.695e^-4	0.781	INTERGENIC
2R	6509066	2R_6509066_SNP [dm3] 2R_10621561_SNP [dm6]	T	C	2.695e^-4	0.781	UPSTREAM CG11883 INTRON CG11883
3R	10305787	3R_10305787_SNP [dm3] 3R_14480065_SNP [dm6]	G	A	2.696e^-4	0.781	INTRON cv-c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	27129490	3R_27129490_SNP [dm3] 3R_31303768_SNP [dm6]	A	G	2.701e^-4	0.781	SYNONYMOUS_CODING CG11340	TF binding site mE1_TFBS_sens
2R	15843801	2R_15843801_SNP [dm3] 2R_19956296_SNP [dm6]	A	G	2.712e^-4	0.781	SYNONYMOUS_CODING CG44623
3L	2645886	3L_2645886_SNP [dm3] 3L_2645886_SNP [dm6]	C	A	2.716e^-4	0.781	NON_SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16253785	2R_16253785_SNP [dm3] 2R_20366280_SNP [dm6]	A	T	2.717e^-4	0.781	INTERGENIC
2R	3142051	2R_3142051_SNP [dm3] 2R_7254546_SNP [dm6]	G	A	2.726e^-4	0.781	UPSTREAM CR45280 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8447066	2L_8447066_SNP [dm3] 2L_8447066_SNP [dm6]	C	G	2.730e^-4	0.781	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_inv
3L	13588422	3L_13588422_SNP [dm3] 3L_13595322_SNP [dm6]	C	T	2.742e^-4	0.781	INTRON bru-3
2L	12148371	2L_12148371_SNP [dm3] 2L_12148371_SNP [dm6]	T	A	2.744e^-4	0.781	INTRON CG31760
2R	15100187	2R_15100187_SNP [dm3] 2R_19212682_SNP [dm6]	C	T	2.750e^-4	0.781	INTRON hppy	TF binding site mE1_TFBS_inv
3L	11892130	3L_11892130_SNP [dm3] 3L_11899030_SNP [dm6]	A	G	2.761e^-4	0.781	INTRON CG44837 & 1 other
3L	14299077	3L_14299077_SNP [dm3] 3L_14305977_SNP [dm6]	G	T	2.761e^-4	0.781	INTRON fz
3L	19449565	3L_19449565_SNP [dm3] 3L_19456465_SNP [dm6]	T	C	2.762e^-4	0.781	DOWNSTREAM CR45434 INTERGENIC
X	17901960	X_17901960_SNP [dm3] X_18007927_SNP [dm6]	T	A	2.777e^-4	0.781	UPSTREAM CG12672 INTRON Sh
X	10534106	X_10534106_SNP [dm3] X_10640073_SNP [dm6]	G	T	2.785e^-4	0.781	INTRON X11Lbeta
2L	15003144	2L_15003144_SNP [dm3] 2L_15003144_SNP [dm6]	C	T	2.792e^-4	0.781	INTERGENIC
2L	12896052	2L_12896052_SNP [dm3] 2L_12896052_SNP [dm6]	T	C	2.801e^-4	0.781	INTERGENIC
3L	19076097	3L_19076097_SNP [dm3] 3L_19082997_SNP [dm6]	A	G	2.806e^-4	0.781	INTRON Mkp3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11401848	2L_11401848_SNP [dm3] 2L_11401848_SNP [dm6]	C	G	2.808e^-4	0.781	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27136505	3R_27136505_SNP [dm3] 3R_31310783_SNP [dm6]	T	A	2.808e^-4	0.781	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	743084	3L_743084_INS [dm3] 3L_743084_INS [dm6]	T	TT	2.808e^-4	0.781	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	2644981	3L_2644981_SNP [dm3] 3L_2644981_SNP [dm6]	A	T	2.809e^-4	0.781	UPSTREAM CG1143 INTERGENIC
2R	16705415	2R_16705415_SNP [dm3] 2R_20817910_SNP [dm6]	T	C	2.814e^-4	0.781	INTERGENIC
2L	19601009	2L_19601009_SNP [dm3] 2L_19601009_SNP [dm6]	C	A	2.814e^-4	0.781	INTRON CR44978 & 1 other
2R	148969	2R_148969_SNP [dm3] 2R_4261464_SNP [dm6]	C	A	2.815e^-4	0.781	INTERGENIC
3R	22226725	3R_22226725_SNP [dm3] 3R_26401003_SNP [dm6]	T	C	2.820e^-4	0.781	DOWNSTREAM ppk15 INTERGENIC
2R	14077068	2R_14077068_SNP [dm3] 2R_18189563_SNP [dm6]	G	A	2.824e^-4	0.781	UTR_3_PRIME CG14500 INTRON CG33958
2R	18859151	2R_18859151_DEL [dm3] 2R_22971628_DEL [dm6]	AA	A	2.825e^-4	0.781	INTERGENIC
2R	14992287	2R_14992287_SNP [dm3] 2R_19104782_SNP [dm6]	G	A	2.826e^-4	0.781	INTRON 5-HT1A
3L	18331540	3L_18331540_INS [dm3] 3L_18338440_INS [dm6]	T	TCC	2.832e^-4	0.781	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13024912	3R_13024912_SNP [dm3] 3R_17199190_SNP [dm6]	A	T	2.842e^-4	0.781	INTRON Mur89F
3L	428289	3L_428289_SNP [dm3] 3L_428289_SNP [dm6]	T	A	2.856e^-4	0.781	INTERGENIC
2R	6509009	2R_6509009_SNP [dm3] 2R_10621504_SNP [dm6]	G	A	2.858e^-4	0.781	UPSTREAM CG11883 INTRON CG11883
2L	13458955	2L_13458955_SNP [dm3] 2L_13458955_SNP [dm6]	G	T	2.859e^-4	0.781	UPSTREAM CR45684 & 1 other DOWNSTREAM CG42809 INTRON CG42784
X	13348898	X_13348898_INS [dm3] X_13454865_INS [dm6]	G	TT	2.861e^-4	0.781	INTRON Neto
3R	25790809	3R_25790809_SNP [dm3] 3R_29965087_SNP [dm6]	C	A	2.861e^-4	0.781	INTRON TkR99D
2R	13540819	2R_13540819_SNP [dm3] 2R_17653314_SNP [dm6]	A	T	2.866e^-4	0.781	INTRON CCHa1-R
2R	13540823	2R_13540823_SNP [dm3] 2R_17653318_SNP [dm6]	T	A	2.866e^-4	0.781	INTRON CCHa1-R
3L	11912381	3L_11912381_SNP [dm3] 3L_11919281_SNP [dm6]	T	A	2.868e^-4	0.781	INTRON CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2646481	3L_2646481_SNP [dm3] 3L_2646481_SNP [dm6]	T	C	2.875e^-4	0.781	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad
3L	3954093	3L_3954093_SNP [dm3] 3L_3954093_SNP [dm6]	A	T	2.878e^-4	0.781	DOWNSTREAM CG12605 INTERGENIC
2R	119371	2R_119371_SNP [dm3] 2R_4231866_SNP [dm6]	G	C	2.888e^-4	0.781	INTERGENIC
2R	15225857	2R_15225857_SNP [dm3] 2R_19338352_SNP [dm6]	T	C	2.889e^-4	0.781	INTRON Rgk1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10571734	3R_10571734_SNP [dm3] 3R_14746012_SNP [dm6]	G	A	2.891e^-4	0.781	UTR_3_PRIME smp-30 DOWNSTREAM smp-30 INTRON jvl
2L	4871698	2L_4871698_SNP [dm3] 2L_4871698_SNP [dm6]	A	C	2.891e^-4	0.781	SYNONYMOUS_CODING pog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	18540270	2R_18540270_SNP [dm3] 2R_22652765_SNP [dm6]	G	C	2.900e^-4	0.781	SYNONYMOUS_CODING Cyp6d2 UTR_3_PRIME nsr DOWNSTREAM nsr
3R	26633911	3R_26633911_DEL [dm3] 3R_30808189_DEL [dm6]	AT	C	2.910e^-4	0.781	UPSTREAM cindr DOWNSTREAM dj-1beta INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	10200495	3R_10200495_SNP [dm3] 3R_14374773_SNP [dm6]	C	T	2.918e^-4	0.781	DOWNSTREAM CR44943 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	3692346	2R_3692346_SNP [dm3] 2R_7804841_SNP [dm6]	G	A	2.924e^-4	0.781	START_GAINED Nop17l UTR_5_PRIME Nop17l	TF binding site mE1_TFBS_cad
X	8344778	X_8344778_INS [dm3] X_8450745_INS [dm6]	T	TCATTGCCTGC...	2.930e^-4	0.781	INTRON org-1
2L	4417295	2L_4417295_SNP [dm3] 2L_4417295_SNP [dm6]	G	A	2.934e^-4	0.781	INTRON CG15431	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15296567	2R_15296567_SNP [dm3] 2R_19409062_SNP [dm6]	C	T	2.935e^-4	0.781	UTR_3_PRIME hts DOWNSTREAM hts INTRON hts
X	7613947	X_7613947_SNP [dm3] X_7719914_SNP [dm6]	C	T	2.937e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3154459	2L_3154459_SNP [dm3] 2L_3154459_SNP [dm6]	A	T	2.951e^-4	0.781	INTRON Mad
3L	4619404	3L_4619404_SNP [dm3] 3L_4619404_SNP [dm6]	A	G	2.966e^-4	0.781	INTRON Src64B
2R	19317553	2R_19317553_SNP [dm3] 2R_23430030_SNP [dm6]	C	T	2.970e^-4	0.781	INTRON CG9815
3L	12025599	3L_12025599_SNP [dm3] 3L_12032499_SNP [dm6]	T	C	2.971e^-4	0.781	UPSTREAM CG43993 INTRON rols
X	11409403	X_11409403_SNP [dm3] X_11515370_SNP [dm6]	A	T	2.975e^-4	0.781	INTRON Drak	TF binding site mE1_TFBS_Kr
2R	9078145	2R_9078145_SNP [dm3] 2R_13190640_SNP [dm6]	C	T	2.983e^-4	0.781	UPSTREAM seq & 2 others INTRON Kdm4B	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	11756685	X_11756685_SNP [dm3] X_11862652_SNP [dm6]	A	G	2.984e^-4	0.781	SYNONYMOUS_CODING ATP7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11892131	3L_11892131_SNP [dm3] 3L_11899031_SNP [dm6]	C	T	2.985e^-4	0.781	INTRON CG44837 & 1 other
2L	3189076	2L_3189076_DEL [dm3] 2L_3189076_DEL [dm6]	TC	T	3.004e^-4	0.781	INTRON CG34393
X	11945085	X_11945085_SNP [dm3] X_12051052_SNP [dm6]	A	T	3.010e^-4	0.781	INTRON CR43960 & 1 other
X	12793517	X_12793517_SNP [dm3] X_12899484_SNP [dm6]	T	C	3.013e^-4	0.781	UPSTREAM CG32650 INTRON CG32649	TF binding site mE1_TFBS_chinmo
3R	11322549	3R_11322549_SNP [dm3] 3R_15496827_SNP [dm6]	T	C	3.013e^-4	0.781	INTERGENIC
2R	17293436	2R_17293436_SNP [dm3] 2R_21405931_SNP [dm6]	C	T	3.014e^-4	0.781	INTRON Sdc
3R	10312060	3R_10312060_SNP [dm3] 3R_14486338_SNP [dm6]	C	T	3.015e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	19996124	X_19996124_SNP [dm3] X_20102091_SNP [dm6]	A	T	3.016e^-4	0.781	INTERGENIC	transposable element FlyBase
3R	25844950	3R_25844950_SNP [dm3] 3R_30019228_SNP [dm6]	G	A	3.018e^-4	0.781	SYNONYMOUS_CODING Mgat2	TF binding site mE1_TFBS_chinmo
3R	22769068	3R_22769068_SNP [dm3] 3R_26943346_SNP [dm6]	G	A	3.019e^-4	0.781	INTRON sda	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	4391378	3R_4391378_SNP [dm3] 3R_8565656_SNP [dm6]	G	C	3.020e^-4	0.781	NON_SYNONYMOUS_CODING Cenp-C	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3L	11620990	3L_11620990_SNP [dm3] 3L_11627890_SNP [dm6]	G	C	3.027e^-4	0.781	UPSTREAM CG18815 DOWNSTREAM PCID2 INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	16445622	2L_16445622_SNP [dm3] 2L_16445622_SNP [dm6]	C	A	3.028e^-4	0.781	SYNONYMOUS_CODING Idgf1 INTRON CG5888
2L	17791346	2L_17791346_SNP [dm3] 2L_17791346_SNP [dm6]	T	C	3.029e^-4	0.781	INTRON CadN2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17792863	2L_17792863_SNP [dm3] 2L_17792863_SNP [dm6]	C	A	3.029e^-4	0.781	INTRON CadN2 EXON CR43419	TF binding site mE1_TFBS_cad
2L	2279895	2L_2279895_SNP [dm3] 2L_2279895_SNP [dm6]	G	A	3.041e^-4	0.781	UPSTREAM CR43753 INTERGENIC
3R	10210033	3R_10210033_SNP [dm3] 3R_14384311_SNP [dm6]	C	A	3.043e^-4	0.781	INTERGENIC
3L	743080	3L_743080_SNP [dm3] 3L_743080_SNP [dm6]	T	A	3.045e^-4	0.781	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	5413763	2R_5413763_SNP [dm3] 2R_9526258_SNP [dm6]	A	G	3.045e^-4	0.781	INTRON brp
2R	181373	2R_181373_SNP [dm3] 2R_4293868_SNP [dm6]	G	T	3.048e^-4	0.781	INTERGENIC
2L	21921535	2L_21921535_SNP [dm3] 2L_21921535_SNP [dm6]	T	C	3.053e^-4	0.781	INTERGENIC
2R	11576989	2R_11576989_SNP [dm3] 2R_15689484_SNP [dm6]	A	G	3.058e^-4	0.781	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15943851	2R_15943851_SNP [dm3] 2R_20056346_SNP [dm6]	G	T	3.061e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	3680449	3L_3680449_SNP [dm3] 3L_3680449_SNP [dm6]	G	A	3.065e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_cad
X	1931082	X_1931082_SNP [dm3] X_2037049_SNP [dm6]	A	G	3.065e^-4	0.781	UPSTREAM Actn INTRON Actn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	21141050	3R_21141050_SNP [dm3] 3R_25315328_SNP [dm6]	A	C	3.065e^-4	0.781	INTRON CG10559
2L	686406	2L_686406_SNP [dm3] 2L_686406_SNP [dm6]	C	A	3.069e^-4	0.781	INTRON ds
2R	19297388	2R_19297388_SNP [dm3] 2R_23409865_SNP [dm6]	A	T	3.070e^-4	0.781	INTERGENIC
2L	11401960	2L_11401960_SNP [dm3] 2L_11401960_SNP [dm6]	A	T	3.080e^-4	0.781	INTERGENIC	regulatory region REDfly_CRMs
2R	13195840	2R_13195840_SNP [dm3] 2R_17308335_SNP [dm6]	G	T	3.082e^-4	0.781	INTRON mbl
2R	4038604	2R_4038604_SNP [dm3] 2R_8151099_SNP [dm6]	A	T	3.083e^-4	0.781	INTRON Lpin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15401423	3L_15401423_SNP [dm3] 3L_15408323_SNP [dm6]	A	T	3.088e^-4	0.781	DOWNSTREAM CG33259 INTERGENIC
3R	10571493	3R_10571493_INS [dm3] 3R_14745771_INS [dm6]	G	GC	3.092e^-4	0.781	DOWNSTREAM smp-30 INTRON jvl
2L	16446845	2L_16446845_SNP [dm3] 2L_16446845_SNP [dm6]	G	C	3.093e^-4	0.781	UPSTREAM Idgf2 DOWNSTREAM Idgf1 INTRON CG5888
X	4759802	X_4759802_SNP [dm3] X_4865769_SNP [dm6]	C	A	3.097e^-4	0.781	INTRON CG42594
3L	4619186	3L_4619186_SNP [dm3] 3L_4619186_SNP [dm6]	C	A	3.102e^-4	0.781	INTRON Src64B
3L	16983394	3L_16983394_SNP [dm3] 3L_16990294_SNP [dm6]	C	A	3.108e^-4	0.781	INTRON Exn
3L	1564675	3L_1564675_SNP [dm3] 3L_1564675_SNP [dm6]	C	T	3.111e^-4	0.781	UPSTREAM CG12003 INTRON CG7879
X	10462715	X_10462715_SNP [dm3] X_10568682_SNP [dm6]	A	G	3.118e^-4	0.781	INTRON spri
2R	6165842	2R_6165842_SNP [dm3] 2R_10278337_SNP [dm6]	G	T	3.118e^-4	0.781	UPSTREAM CAP INTRON CAP
X	4125116	X_4125116_SNP [dm3] X_4231083_SNP [dm6]	A	T	3.124e^-4	0.781	INTERGENIC
3L	1564371	3L_1564371_SNP [dm3] 3L_1564371_SNP [dm6]	A	G	3.124e^-4	0.781	INTRON CG7879
X	3380537	X_3380537_SNP [dm3] X_3486504_SNP [dm6]	A	G	3.131e^-4	0.781	NON_SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_sens
2R	3177340	2R_3177340_SNP [dm3] 2R_7289835_SNP [dm6]	G	A	3.150e^-4	0.781	INTRON pwn
3L	14561388	3L_14561388_SNP [dm3] 3L_14568288_SNP [dm6]	A	G	3.154e^-4	0.781	DOWNSTREAM CG42758 INTERGENIC
2R	19889443	2R_19889443_SNP [dm3] 2R_24001920_SNP [dm6]	T	A	3.158e^-4	0.781	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	19318930	3L_19318930_SNP [dm3] 3L_19325830_SNP [dm6]	T	C	3.168e^-4	0.781	INTRON pip
2R	16294346	2R_16294346_SNP [dm3] 2R_20406841_SNP [dm6]	A	G	3.169e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_inv
3L	1564511	3L_1564511_SNP [dm3] 3L_1564511_SNP [dm6]	A	G	3.169e^-4	0.781	UPSTREAM CG12003 INTRON CG7879
2R	6588312	2R_6588312_SNP [dm3] 2R_10700807_SNP [dm6]	G	C	3.169e^-4	0.781	INTRON stan
2R	14077232	2R_14077232_SNP [dm3] 2R_18189727_SNP [dm6]	T	A	3.170e^-4	0.781	DOWNSTREAM CG14500 INTRON CG33958
2L	12213802	2L_12213802_SNP [dm3] 2L_12213802_SNP [dm6]	T	C	3.174e^-4	0.781	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	7621051	X_7621051_SNP [dm3] X_7727018_SNP [dm6]	G	A	3.175e^-4	0.781	SYNONYMOUS_CODING NELF-B	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	4382182	3R_4382182_SNP [dm3] 3R_8556460_SNP [dm6]	G	A	3.178e^-4	0.781	INTERGENIC
3R	12632306	3R_12632306_SNP [dm3] 3R_16806584_SNP [dm6]	G	C	3.180e^-4	0.781	DOWNSTREAM abd-A INTERGENIC	TF binding site mE1_TFBS_cad
3R	27137550	3R_27137550_SNP [dm3] 3R_31311828_SNP [dm6]	C	T	3.182e^-4	0.781	UTR_5_PRIME CG34347	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	14452462	2R_14452462_SNP [dm3] 2R_18564957_SNP [dm6]	A	C	3.185e^-4	0.781	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11276747	3L_11276747_SNP [dm3] 3L_11283647_SNP [dm6]	C	T	3.207e^-4	0.781	INTERGENIC
3L	10756244	3L_10756244_SNP [dm3] 3L_10763144_SNP [dm6]	A	G	3.208e^-4	0.781	INTERGENIC
2L	3832016	2L_3832016_SNP [dm3] 2L_3832016_SNP [dm6]	G	A	3.211e^-4	0.781	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE
2R	17042673	2R_17042673_SNP [dm3] 2R_21155168_SNP [dm6]	C	T	3.212e^-4	0.781	NON_SYNONYMOUS_CODING CG30389	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9007178	X_9007178_SNP [dm3] X_9113145_SNP [dm6]	T	A	3.215e^-4	0.781	INTRON AP-1gamma
3L	1571322	3L_1571322_SNP [dm3] 3L_1571322_SNP [dm6]	T	A	3.219e^-4	0.781	UPSTREAM CG12004 INTRON CG12004
3L	4619448	3L_4619448_SNP [dm3] 3L_4619448_SNP [dm6]	C	T	3.222e^-4	0.781	INTRON Src64B
X	13461540	X_13461540_INS [dm3] X_13567507_INS [dm6]	T	TTCTGCTCGGAT...	3.225e^-4	0.781	INTRON Tango13	TF binding site BDTNP1_TFBS_prd
3L	14310195	3L_14310195_SNP [dm3] 3L_14317095_SNP [dm6]	T	C	3.228e^-4	0.781	INTRON fz
3R	10435116	3R_10435116_SNP [dm3] 3R_14609394_SNP [dm6]	T	C	3.231e^-4	0.781	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9636493	3L_9636493_SNP [dm3] 3L_9643393_SNP [dm6]	C	T	3.248e^-4	0.781	UPSTREAM CG33696 INTRON fry
2R	16340634	2R_16340634_SNP [dm3] 2R_20453129_SNP [dm6]	A	G	3.248e^-4	0.781	INTRON CG12484
X	7613900	X_7613900_SNP [dm3] X_7719867_SNP [dm6]	C	T	3.249e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12025589	3L_12025589_SNP [dm3] 3L_12032489_SNP [dm6]	G	A	3.259e^-4	0.781	UPSTREAM CG43993 INTRON rols
3L	11728415	3L_11728415_SNP [dm3] 3L_11735315_SNP [dm6]	C	T	3.264e^-4	0.781	UTR_3_PRIME CG6024 DOWNSTREAM CG6024
3L	4556696	3L_4556696_SNP [dm3] 3L_4556696_SNP [dm6]	T	A	3.269e^-4	0.781	UPSTREAM CG42540 INTRON CG42540
X	12782881	X_12782881_INS [dm3] X_12888848_INS [dm6]	T	TT	3.281e^-4	0.781	INTRON Pde9
3L	15401421	3L_15401421_SNP [dm3] 3L_15408321_SNP [dm6]	G	A	3.283e^-4	0.781	DOWNSTREAM CG33259 INTERGENIC
2R	16863939	2R_16863939_SNP [dm3] 2R_20976434_SNP [dm6]	T	A	3.285e^-4	0.781	UPSTREAM CG9344 INTRON CG34115	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7004714	2R_7004714_SNP [dm3] 2R_11117209_SNP [dm6]	T	A	3.286e^-4	0.781	UPSTREAM luna DOWNSTREAM Cyp12d1-p INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	20171451	3L_20171451_SNP [dm3] 3L_20178351_SNP [dm6]	T	C	3.288e^-4	0.781	INTRON CG42674
2L	4019339	2L_4019339_SNP [dm3] 2L_4019339_SNP [dm6]	C	G	3.293e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	10998512	2R_10998512_SNP [dm3] 2R_15111007_SNP [dm6]	G	T	3.293e^-4	0.781	INTERGENIC
3L	18331609	3L_18331609_SNP [dm3] 3L_18338509_SNP [dm6]	T	A	3.312e^-4	0.781	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24179050	3R_24179050_SNP [dm3] 3R_28353328_SNP [dm6]	C	T	3.319e^-4	0.781	NON_SYNONYMOUS_CODING Or98b
3L	1179075	3L_1179075_SNP [dm3] 3L_1179075_SNP [dm6]	G	A	3.320e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11976340	2R_11976340_SNP [dm3] 2R_16088835_SNP [dm6]	G	T	3.339e^-4	0.781	INTRON Dg
2L	606452	2L_606452_SNP [dm3] 2L_606452_SNP [dm6]	C	T	3.350e^-4	0.781	DOWNSTREAM CR43648 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19736664	3R_19736664_SNP [dm3] 3R_23910942_SNP [dm6]	C	T	3.353e^-4	0.781	INTRON sba
2R	10382797	2R_10382797_SNP [dm3] 2R_14495292_SNP [dm6]	A	G	3.354e^-4	0.781	SYNONYMOUS_CODING L	TF binding site mE1_TFBS_cad
2R	19726701	2R_19726701_SNP [dm3] 2R_23839178_SNP [dm6]	C	T	3.356e^-4	0.781	UTR_3_PRIME CG5549 DOWNSTREAM snoRNA:Psi18S-176
X	1882613	X_1882613_SNP [dm3] X_1988580_SNP [dm6]	G	A	3.356e^-4	0.781	INTRON Hr4	TF binding site mE1_TFBS_Trl
X	5229333	X_5229333_SNP [dm3] X_5335300_SNP [dm6]	C	T	3.363e^-4	0.781	DOWNSTREAM CanB INTERGENIC
3L	17678721	3L_17678721_SNP [dm3] 3L_17685621_SNP [dm6]	C	A	3.363e^-4	0.781	INTERGENIC
2L	11401961	2L_11401961_SNP [dm3] 2L_11401961_SNP [dm6]	C	G	3.370e^-4	0.781	INTERGENIC	regulatory region REDfly_CRMs
3L	6819338	3L_6819338_SNP [dm3] 3L_6826238_SNP [dm6]	G	T	3.380e^-4	0.781	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	25320303	3R_25320303_SNP [dm3] 3R_29494581_SNP [dm6]	G	T	3.381e^-4	0.781	UPSTREAM CG2010 DOWNSTREAM Diedel INTERGENIC
X	2479929	X_2479929_SNP [dm3] X_2585896_SNP [dm6]	A	T	3.386e^-4	0.781	UPSTREAM wds & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	20024335	X_20024335_SNP [dm3] X_20130302_SNP [dm6]	T	C	3.391e^-4	0.781	DOWNSTREAM CG42582 INTERGENIC
3R	25394600	3R_25394600_SNP [dm3] 3R_29568878_SNP [dm6]	A	T	3.399e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	14678389	2R_14678389_SNP [dm3] 2R_18790884_SNP [dm6]	C	A	3.399e^-4	0.781	NON_SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26659826	3R_26659826_SNP [dm3] 3R_30834104_SNP [dm6]	A	C	3.402e^-4	0.781	INTRON CG15544
2R	16597609	2R_16597609_SNP [dm3] 2R_20710104_SNP [dm6]	A	G	3.411e^-4	0.781	INTRON dpr
2R	9701403	2R_9701403_SNP [dm3] 2R_13813898_SNP [dm6]	G	A	3.419e^-4	0.781	INTRON stj
3L	11712912	3L_11712912_SNP [dm3] 3L_11719812_SNP [dm6]	A	G	3.429e^-4	0.781	INTERGENIC
X	12793504	X_12793504_SNP [dm3] X_12899471_SNP [dm6]	C	T	3.432e^-4	0.781	UPSTREAM CG32650 INTRON CG32649	TF binding site mE1_TFBS_chinmo
X	18380429	X_18380429_SNP [dm3] X_18486396_SNP [dm6]	A	C	3.439e^-4	0.781	INTRON psh
2R	11128197	2R_11128197_SNP [dm3] 2R_15240692_SNP [dm6]	C	T	3.444e^-4	0.781	INTRON Fs
3R	17761308	3R_17761308_SNP [dm3] 3R_21935586_SNP [dm6]	G	A	3.450e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	14749082	2L_14749082_SNP [dm3] 2L_14749082_SNP [dm6]	C	A	3.450e^-4	0.781	INTERGENIC
2L	14749084	2L_14749084_SNP [dm3] 2L_14749084_SNP [dm6]	T	C	3.450e^-4	0.781	INTERGENIC
3L	4841826	3L_4841826_SNP [dm3] 3L_4841826_SNP [dm6]	T	C	3.459e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	17957976	X_17957976_SNP [dm3] X_18063943_SNP [dm6]	A	G	3.461e^-4	0.781	UPSTREAM Sh & 1 other INTERGENIC
3L	1164293	3L_1164293_SNP [dm3] 3L_1164293_SNP [dm6]	C	T	3.462e^-4	0.781	INTRON bab2	regulatory region REDfly_CRMs
3L	13242551	3L_13242551_SNP [dm3] 3L_13249451_SNP [dm6]	T	C	3.462e^-4	0.781	UPSTREAM tRNA:D2:69F & 1 other INTRON caps
3L	1564487	3L_1564487_SNP [dm3] 3L_1564487_SNP [dm6]	C	A	3.469e^-4	0.781	UPSTREAM CG12003 INTRON CG7879
3L	14555445	3L_14555445_SNP [dm3] 3L_14562345_SNP [dm6]	A	T	3.476e^-4	0.781	INTRON CG34039	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
2R	17779910	2R_17779910_SNP [dm3] 2R_21892405_SNP [dm6]	T	G	3.476e^-4	0.781	INTRON Fili
2L	12923423	2L_12923423_SNP [dm3] 2L_12923423_SNP [dm6]	T	G	3.477e^-4	0.781	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
2L	17789776	2L_17789776_SNP [dm3] 2L_17789776_SNP [dm6]	T	A	3.478e^-4	0.781	INTRON CadN2
X	2554105	X_2554105_SNP [dm3] X_2660072_SNP [dm6]	T	C	3.484e^-4	0.781	SYNONYMOUS_CODING sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13950559	2R_13950559_SNP [dm3] 2R_18063054_SNP [dm6]	A	T	3.486e^-4	0.781	INTRON CG34386
3L	5475182	3L_5475182_SNP [dm3] 3L_5482082_SNP [dm6]	C	T	3.501e^-4	0.781	SYNONYMOUS_CODING CG4835	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8797746	3L_8797746_SNP [dm3] 3L_8804646_SNP [dm6]	G	C	3.505e^-4	0.781	UPSTREAM CG34427 & 1 other INTERGENIC
3L	12446783	3L_12446783_SNP [dm3] 3L_12453683_SNP [dm6]	C	A	3.510e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_Kr
2R	6460371	2R_6460371_SNP [dm3] 2R_10572866_SNP [dm6]	C	A	3.514e^-4	0.781	INTRON psq
3L	13588371	3L_13588371_SNP [dm3] 3L_13595271_SNP [dm6]	A	G	3.538e^-4	0.781	INTRON bru-3
3L	2395012	3L_2395012_SNP [dm3] 3L_2395012_SNP [dm6]	G	T	3.538e^-4	0.781	INTRON CG45186	TF binding site mE1_TFBS_cad
2L	638038	2L_638038_SNP [dm3] 2L_638038_SNP [dm6]	G	C	3.539e^-4	0.781	INTERGENIC
2R	20190953	2R_20190953_SNP [dm3] 2R_24303430_SNP [dm6]	T	C	3.547e^-4	0.781	INTERGENIC
2L	7718991	2L_7718991_SNP [dm3] 2L_7718991_SNP [dm6]	T	A	3.549e^-4	0.781	SYNONYMOUS_CODING CG13793 DOWNSTREAM CG13794
X	16579012	X_16579012_SNP [dm3] X_16684979_SNP [dm6]	A	G	3.556e^-4	0.781	UTR_3_PRIME Sep4
2L	14748984	2L_14748984_SNP [dm3] 2L_14748984_SNP [dm6]	G	T	3.557e^-4	0.781	INTERGENIC
3L	11733990	3L_11733990_SNP [dm3] 3L_11740890_SNP [dm6]	C	T	3.558e^-4	0.781	INTRON CG6024
2R	2759185	2R_2759185_SNP [dm3] 2R_6871680_SNP [dm6]	C	T	3.559e^-4	0.781	INTRON coro	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	18380392	X_18380392_SNP [dm3] X_18486359_SNP [dm6]	A	C	3.562e^-4	0.781	INTRON psh
3L	8810300	3L_8810300_SNP [dm3] 3L_8817200_SNP [dm6]	G	T	3.563e^-4	0.781	INTERGENIC
2L	5454906	2L_5454906_SNP [dm3] 2L_5454906_SNP [dm6]	C	T	3.566e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	10569521	X_10569521_SNP [dm3] X_10675488_SNP [dm6]	T	A	3.568e^-4	0.781	INTRON X11Lbeta
3L	6058804	3L_6058804_SNP [dm3] 3L_6065704_SNP [dm6]	G	A	3.568e^-4	0.781	UPSTREAM CG42269 INTERGENIC
2L	7025296	2L_7025296_SNP [dm3] 2L_7025296_SNP [dm6]	C	A	3.578e^-4	0.781	NON_SYNONYMOUS_CODING CG31908	TF binding site mE1_TFBS_cad
X	4120050	X_4120050_SNP [dm3] X_4226017_SNP [dm6]	A	C	3.580e^-4	0.781	INTERGENIC
3L	12024387	3L_12024387_SNP [dm3] 3L_12031287_SNP [dm6]	G	A	3.582e^-4	0.781	INTRON rols
3R	25802719	3R_25802719_SNP [dm3] 3R_29976997_SNP [dm6]	T	A	3.585e^-4	0.781	INTERGENIC
3R	10435114	3R_10435114_SNP [dm3] 3R_14609392_SNP [dm6]	T	A	3.595e^-4	0.781	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	13623400	X_13623400_SNP [dm3] X_13729367_SNP [dm6]	T	C	3.596e^-4	0.781	SYNONYMOUS_CODING g	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4759836	X_4759836_DEL [dm3] X_4865803_DEL [dm6]	AGCCAA	A	3.600e^-4	0.781	INTRON CG42594
2R	7004723	2R_7004723_SNP [dm3] 2R_11117218_SNP [dm6]	T	A	3.615e^-4	0.781	UPSTREAM luna DOWNSTREAM Cyp12d1-p INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12661153	2L_12661153_SNP [dm3] 2L_12661153_SNP [dm6]	C	T	3.617e^-4	0.781	INTRON pdm2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	13099822	2R_13099822_SNP [dm3] 2R_17212317_SNP [dm6]	C	T	3.618e^-4	0.781	INTERGENIC
3L	2646310	3L_2646310_SNP [dm3] 3L_2646310_SNP [dm6]	T	C	3.619e^-4	0.781	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17303582	X_17303582_SNP [dm3] X_17409549_SNP [dm6]	A	G	3.625e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	3327726	X_3327726_SNP [dm3] X_3433693_SNP [dm6]	G	A	3.628e^-4	0.781	INTRON CR44999 & 1 other
3L	11272131	3L_11272131_SNP [dm3] 3L_11279031_SNP [dm6]	T	A	3.629e^-4	0.781	INTERGENIC
3R	25125888	3R_25125888_SNP [dm3] 3R_29300166_SNP [dm6]	C	A	3.635e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	13982428	3L_13982428_SNP [dm3] 3L_13989328_SNP [dm6]	G	T	3.638e^-4	0.781	DOWNSTREAM CG9040 INTRON CG17364
3L	19448906	3L_19448906_SNP [dm3] 3L_19455806_SNP [dm6]	A	G	3.644e^-4	0.781	DOWNSTREAM CR45434 INTERGENIC
3R	25589836	3R_25589836_SNP [dm3] 3R_29764114_SNP [dm6]	A	C	3.651e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16445625	2L_16445625_SNP [dm3] 2L_16445625_SNP [dm6]	C	T	3.660e^-4	0.781	SYNONYMOUS_CODING Idgf1 INTRON CG5888
3L	8207850	3L_8207850_SNP [dm3] 3L_8214750_SNP [dm6]	T	C	3.667e^-4	0.781	UPSTREAM CG8012 INTERGENIC
X	5534861	X_5534861_INS [dm3] X_5640828_INS [dm6]	A	AC	3.671e^-4	0.781	INTRON CG42492
3L	18645419	3L_18645419_SNP [dm3] 3L_18652319_SNP [dm6]	T	G	3.671e^-4	0.781	INTRON MYPT-75D
2R	14561381	2R_14561381_SNP [dm3] 2R_18673876_SNP [dm6]	A	C	3.671e^-4	0.781	UPSTREAM edl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	18183500	2R_18183500_SNP [dm3] 2R_22295995_SNP [dm6]	T	A	3.676e^-4	0.781	NON_SYNONYMOUS_CODING CG5819	TF binding site mE1_TFBS_cad
2R	9146868	2R_9146868_SNP [dm3] 2R_13259363_SNP [dm6]	C	T	3.682e^-4	0.781	UPSTREAM CG42319 DOWNSTREAM CG10799 INTERGENIC
3R	10434996	3R_10434996_SNP [dm3] 3R_14609274_SNP [dm6]	A	G	3.683e^-4	0.781	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	8388326	3R_8388326_SNP [dm3] 3R_12562604_SNP [dm6]	C	T	3.687e^-4	0.781	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
X	4121020	X_4121020_SNP [dm3] X_4226987_SNP [dm6]	C	A	3.695e^-4	0.781	INTERGENIC
2L	14873016	2L_14873016_SNP [dm3] 2L_14873016_SNP [dm6]	C	T	3.696e^-4	0.781	UPSTREAM CG4480 INTERGENIC
2R	6016574	2R_6016574_SNP [dm3] 2R_10129069_SNP [dm6]	G	A	3.697e^-4	0.781	INTRON gem	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	5369541	3L_5369541_SNP [dm3] 3L_5376441_SNP [dm6]	C	T	3.699e^-4	0.781	INTERGENIC
3L	12660311	3L_12660311_SNP [dm3] 3L_12667211_SNP [dm6]	G	T	3.713e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12972846	3R_12972846_SNP [dm3] 3R_17147124_SNP [dm6]	C	T	3.717e^-4	0.781	NON_SYNONYMOUS_CODING m-cup
2L	17315218	2L_17315218_SNP [dm3] 2L_17315218_SNP [dm6]	T	C	3.720e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	14087322	2R_14087322_SNP [dm3] 2R_18199817_SNP [dm6]	C	A	3.721e^-4	0.781	INTERGENIC
X	5433727	X_5433727_SNP [dm3] X_5539694_SNP [dm6]	G	A	3.722e^-4	0.781	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_inv
X	9772816	X_9772816_SNP [dm3] X_9878783_SNP [dm6]	G	T	3.723e^-4	0.781	INTRON CG1468
2L	3424486	2L_3424486_SNP [dm3] 2L_3424486_SNP [dm6]	G	T	3.725e^-4	0.781	INTRON pgant2
X	5111539	X_5111539_SNP [dm3] X_5217506_SNP [dm6]	C	T	3.728e^-4	0.781	SYNONYMOUS_CODING rg UTR_3_PRIME CG15465
X	11756394	X_11756394_SNP [dm3] X_11862361_SNP [dm6]	T	C	3.737e^-4	0.781	SYNONYMOUS_CODING ATP7	TF binding site mE1_TFBS_chinmo
X	8650324	X_8650324_INS [dm3] X_8756291_INS [dm6]	T	TT	3.737e^-4	0.781	DOWNSTREAM Lim1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12850971	X_12850971_SNP [dm3] X_12956938_SNP [dm6]	G	T	3.740e^-4	0.781	INTRON hec
2R	11129015	2R_11129015_SNP [dm3] 2R_15241510_SNP [dm6]	A	G	3.740e^-4	0.781	UTR_5_PRIME Fs
2R	4953988	2R_4953988_SNP [dm3] 2R_9066483_SNP [dm6]	T	C	3.745e^-4	0.781	INTRON ana	regulatory region REDfly_CRMs
2L	2550935	2L_2550935_SNP [dm3] 2L_2550935_SNP [dm6]	A	G	3.753e^-4	0.781	DOWNSTREAM CG3515 INTERGENIC
3L	11020856	3L_11020856_DEL [dm3] 3L_11027756_DEL [dm6]	TA	T	3.756e^-4	0.781	DOWNSTREAM CG32079 INTRON CG32081
2L	7248341	2L_7248341_SNP [dm3] 2L_7248341_SNP [dm6]	A	G	3.758e^-4	0.781	INTRON Ndae1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20417531	X_20417531_SNP [dm3] X_20546504_SNP [dm6]	T	A	3.758e^-4	0.781	INTRON RunxB
2R	17464144	2R_17464144_DEL [dm3] 2R_21576639_DEL [dm6]	TT	T	3.759e^-4	0.781	UPSTREAM CG10440 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	11080877	2R_11080877_SNP [dm3] 2R_15193372_SNP [dm6]	C	T	3.760e^-4	0.781	UPSTREAM Sfp51E DOWNSTREAM CG43829 INTERGENIC
3L	7200910	3L_7200910_SNP [dm3] 3L_7207810_SNP [dm6]	A	T	3.761e^-4	0.781	INTERGENIC
3R	4341305	3R_4341305_SNP [dm3] 3R_8515583_SNP [dm6]	G	T	3.762e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	19481717	2L_19481717_SNP [dm3] 2L_19481717_SNP [dm6]	G	A	3.763e^-4	0.781	DOWNSTREAM CG10195 INTERGENIC
2R	17779933	2R_17779933_DEL [dm3] 2R_21892428_DEL [dm6]	AA	A	3.764e^-4	0.781	INTRON Fili
3L	1187906	3L_1187906_SNP [dm3] 3L_1187906_SNP [dm6]	G	A	3.766e^-4	0.781	INTERGENIC
3L	3835090	3L_3835090_INS [dm3] 3L_3835090_INS [dm6]	A	AATATAACTATC...	3.767e^-4	0.781	INTRON enc
3L	428283	3L_428283_MNP [dm3] 3L_428283_MNP [dm6]	AAC	GTT	3.773e^-4	0.781	INTERGENIC
3R	5149226	3R_5149226_SNP [dm3] 3R_9323504_SNP [dm6]	G	A	3.775e^-4	0.781	INTRON CG8861
2L	1278260	2L_1278260_SNP [dm3] 2L_1278260_SNP [dm6]	A	T	3.781e^-4	0.781	INTRON robo3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7066775	2R_7066775_SNP [dm3] 2R_11179270_SNP [dm6]	G	C	3.786e^-4	0.781	INTRON shn	TF binding site mE1_TFBS_inv
2R	4952874	2R_4952874_SNP [dm3] 2R_9065369_SNP [dm6]	G	A	3.793e^-4	0.781	INTRON ana	regulatory region REDfly_CRMs
X	19871357	X_19871357_SNP [dm3] X_19977324_SNP [dm6]	C	A	3.795e^-4	0.781	INTERGENIC
X	3380974	X_3380974_SNP [dm3] X_3486941_SNP [dm6]	G	A	3.802e^-4	0.781	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3381085	X_3381085_SNP [dm3] X_3487052_SNP [dm6]	G	C	3.802e^-4	0.781	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7874174	3L_7874174_SNP [dm3] 3L_7881074_SNP [dm6]	A	G	3.806e^-4	0.781	INTRON CG32365
X	8156849	X_8156849_SNP [dm3] X_8262816_SNP [dm6]	T	C	3.810e^-4	0.781	INTRON CG1632	TF binding site BDTNP1_TFBS_da
2R	19296329	2R_19296329_SNP [dm3] 2R_23408806_SNP [dm6]	C	T	3.816e^-4	0.781	INTERGENIC
3R	10571498	3R_10571498_INS [dm3] 3R_14745776_INS [dm6]	G	CGC	3.820e^-4	0.781	DOWNSTREAM smp-30 INTRON jvl
2R	7836874	2R_7836874_SNP [dm3] 2R_11949369_SNP [dm6]	C	A	3.824e^-4	0.781	INTRON CG13188
3R	27125014	3R_27125014_SNP [dm3] 3R_31299292_SNP [dm6]	G	T	3.824e^-4	0.781	INTERGENIC
3R	24430749	3R_24430749_DEL [dm3] 3R_28605027_DEL [dm6]	GTCTG	G	3.829e^-4	0.781	UTR_3_PRIME Hrb98DE DOWNSTREAM Hrb98DE INTRON Hrb98DE
3L	2395035	3L_2395035_SNP [dm3] 3L_2395035_SNP [dm6]	T	G	3.831e^-4	0.781	INTRON CG45186	TF binding site mE1_TFBS_cad
3R	10665117	3R_10665117_SNP [dm3] 3R_14839395_SNP [dm6]	T	G	3.836e^-4	0.781	INTRON btsz
2R	12280825	2R_12280825_SNP [dm3] 2R_16393320_SNP [dm6]	G	T	3.837e^-4	0.781	INTRON Sema-2b
2R	8366266	2R_8366266_SNP [dm3] 2R_12478761_SNP [dm6]	A	G	3.838e^-4	0.781	INTRON Dh44-R2
2R	12460176	2R_12460176_SNP [dm3] 2R_16572671_SNP [dm6]	T	G	3.838e^-4	0.781	INTRON CG4927
2R	14755578	2R_14755578_SNP [dm3] 2R_18868073_SNP [dm6]	A	G	3.839e^-4	0.781	SYNONYMOUS_CODING CG43109 DOWNSTREAM DptB
3L	16983298	3L_16983298_INS [dm3] 3L_16990198_INS [dm6]	A	AG	3.844e^-4	0.781	INTRON Exn
X	11733047	X_11733047_SNP [dm3] X_11839014_SNP [dm6]	T	C	3.846e^-4	0.781	UPSTREAM CG15741 & 1 other DOWNSTREAM CR43908 INTERGENIC
3R	15073096	3R_15073096_SNP [dm3] 3R_19247374_SNP [dm6]	C	T	3.848e^-4	0.781	SYNONYMOUS_CODING CG5217	TF binding site mE1_TFBS_sens
2L	5561008	2L_5561008_SNP [dm3] 2L_5561008_SNP [dm6]	A	G	3.849e^-4	0.781	SYNONYMOUS_CODING GluRIIB
3L	15401967	3L_15401967_SNP [dm3] 3L_15408867_SNP [dm6]	T	A	3.851e^-4	0.781	DOWNSTREAM CG33259 INTERGENIC
X	12298939	X_12298939_SNP [dm3] X_12404906_SNP [dm6]	A	C	3.853e^-4	0.781	UTR_3_PRIME CG32651
3L	2645866	3L_2645866_SNP [dm3] 3L_2645866_SNP [dm6]	A	G	3.859e^-4	0.781	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9377453	3L_9377453_SNP [dm3] 3L_9384353_SNP [dm6]	T	C	3.859e^-4	0.781	SYNONYMOUS_CODING Hsp27	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	6513250	2L_6513250_SNP [dm3] 2L_6513250_SNP [dm6]	C	T	3.861e^-4	0.781	INTRON CG31637	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	11945098	X_11945098_SNP [dm3] X_12051065_SNP [dm6]	T	A	3.863e^-4	0.781	INTRON CR43960 & 1 other
2R	2756387	2R_2756387_SNP [dm3] 2R_6868882_SNP [dm6]	T	G	3.871e^-4	0.782	INTRON coro
2L	14748974	2L_14748974_SNP [dm3] 2L_14748974_SNP [dm6]	T	G	3.880e^-4	0.783	INTERGENIC
3R	25125893	3R_25125893_INS [dm3] 3R_29300171_INS [dm6]	A	AA	3.888e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	25125906	3R_25125906_SNP [dm3] 3R_29300184_SNP [dm6]	A	C	3.888e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
X	12845768	X_12845768_SNP [dm3] X_12951735_SNP [dm6]	T	C	3.895e^-4	0.784	INTRON hec
3L	6688128	3L_6688128_SNP [dm3] 3L_6695028_SNP [dm6]	A	T	3.915e^-4	0.786	INTRON SP1173
3L	1572479	3L_1572479_SNP [dm3] 3L_1572479_SNP [dm6]	A	G	3.921e^-4	0.786	INTRON CG12004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8448676	2L_8448676_SNP [dm3] 2L_8448676_SNP [dm6]	G	T	3.924e^-4	0.786	SYNONYMOUS_CODING U26
2L	8706288	2L_8706288_SNP [dm3] 2L_8706288_SNP [dm6]	T	C	3.927e^-4	0.786	SYNONYMOUS_CODING CG9314 DOWNSTREAM CR44992 INTRON Hnf4	TF binding site mE1_TFBS_sens
3L	15693061	3L_15693061_SNP [dm3] 3L_15699961_SNP [dm6]	C	T	3.928e^-4	0.786	UPSTREAM comm2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	21888777	X_21888777_SNP [dm3] X_22486941_SNP [dm6]	C	T	3.933e^-4	0.786	UPSTREAM l_1_G0196 DOWNSTREAM Cp110 & 1 other INTRON Cp110
3R	27125777	3R_27125777_SNP [dm3] 3R_31300055_SNP [dm6]	G	A	3.940e^-4	0.786	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	12425748	2R_12425748_SNP [dm3] 2R_16538243_SNP [dm6]	G	A	3.945e^-4	0.786	INTERGENIC
2R	14978893	2R_14978893_SNP [dm3] 2R_19091388_SNP [dm6]	C	T	3.953e^-4	0.786	SYNONYMOUS_CODING 5-HT1A
3L	17891665	3L_17891665_SNP [dm3] 3L_17898565_SNP [dm6]	G	A	3.960e^-4	0.786	DOWNSTREAM Prestin INTERGENIC
2L	7207464	2L_7207464_SNP [dm3] 2L_7207464_SNP [dm6]	A	T	3.974e^-4	0.786	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784
2R	16294366	2R_16294366_SNP [dm3] 2R_20406861_SNP [dm6]	T	C	3.980e^-4	0.786	INTERGENIC	TF binding site mE1_TFBS_inv
X	20025824	X_20025824_INS [dm3] X_20131791_INS [dm6]	A	ATGTA	3.980e^-4	0.786	UPSTREAM CG42582 INTERGENIC
2R	6857060	2R_6857060_SNP [dm3] 2R_10969555_SNP [dm6]	A	T	3.982e^-4	0.786	INTERGENIC
2R	3142061	2R_3142061_SNP [dm3] 2R_7254556_SNP [dm6]	G	A	3.987e^-4	0.786	UPSTREAM CR45280 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	19449077	X_19449077_SNP [dm3] X_19555044_SNP [dm6]	G	A	3.989e^-4	0.786	INTERGENIC
3L	1568757	3L_1568757_SNP [dm3] 3L_1568757_SNP [dm6]	T	C	3.994e^-4	0.786	UPSTREAM CG12004 & 1 other DOWNSTREAM CG12003 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Ubx
3L	1568765	3L_1568765_SNP [dm3] 3L_1568765_SNP [dm6]	T	C	3.994e^-4	0.786	UPSTREAM CG12004 & 1 other DOWNSTREAM CG12003 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Ubx
3L	2116038	3L_2116038_SNP [dm3] 3L_2116038_SNP [dm6]	T	C	4.002e^-4	0.786	UPSTREAM sls INTERGENIC	TF binding site mE1_TFBS_Trl
X	20337729	X_20337729_SNP [dm3] X_20466702_SNP [dm6]	C	A	4.002e^-4	0.786	UTR_3_PRIME CG32506 UPSTREAM GstT3 DOWNSTREAM CG32506
3L	1179494	3L_1179494_SNP [dm3] 3L_1179494_SNP [dm6]	G	A	4.004e^-4	0.786	INTERGENIC
3L	4006853	3L_4006853_SNP [dm3] 3L_4006853_SNP [dm6]	A	G	4.008e^-4	0.786	DOWNSTREAM CG14985 INTERGENIC
3L	5702364	3L_5702364_SNP [dm3] 3L_5709264_SNP [dm6]	G	A	4.014e^-4	0.786	INTRON sif
2R	14992266	2R_14992266_SNP [dm3] 2R_19104761_SNP [dm6]	T	G	4.017e^-4	0.786	INTRON 5-HT1A
X	20443947	X_20443947_SNP [dm3] X_20572920_SNP [dm6]	C	T	4.019e^-4	0.786	INTERGENIC
3L	7156753	3L_7156753_SNP [dm3] 3L_7163653_SNP [dm6]	G	A	4.023e^-4	0.786	INTRON Dscam2
3L	7156769	3L_7156769_SNP [dm3] 3L_7163669_SNP [dm6]	G	A	4.023e^-4	0.786	INTRON Dscam2
2R	10417824	2R_10417824_SNP [dm3] 2R_14530319_SNP [dm6]	A	G	4.024e^-4	0.786	INTRON ttv
3R	22226693	3R_22226693_SNP [dm3] 3R_26400971_SNP [dm6]	T	A	4.038e^-4	0.787	DOWNSTREAM ppk15 INTERGENIC
X	8222268	X_8222268_SNP [dm3] X_8328235_SNP [dm6]	A	T	4.040e^-4	0.787	INTRON nAChRalpha3
X	7894931	X_7894931_SNP [dm3] X_8000898_SNP [dm6]	G	A	4.046e^-4	0.787	INTRON Tbh
3R	2026480	3R_2026480_SNP [dm3] 3R_6200758_SNP [dm6]	G	T	4.052e^-4	0.787	INTRON Osi24
3L	19006822	3L_19006822_SNP [dm3] 3L_19013722_SNP [dm6]	G	A	4.053e^-4	0.787	INTRON nkd
2R	13099227	2R_13099227_SNP [dm3] 2R_17211722_SNP [dm6]	A	T	4.060e^-4	0.788	INTERGENIC
3L	11277773	3L_11277773_DEL [dm3] 3L_11284673_DEL [dm6]	GAAG	G	4.073e^-4	0.788	UPSTREAM CR45404 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14343186	2R_14343186_SNP [dm3] 2R_18455681_SNP [dm6]	A	T	4.079e^-4	0.788	DOWNSTREAM CG30116 INTERGENIC
2R	10343861	2R_10343861_SNP [dm3] 2R_14456356_SNP [dm6]	T	G	4.080e^-4	0.788	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13231861	2R_13231861_SNP [dm3] 2R_17344356_SNP [dm6]	A	G	4.083e^-4	0.788	INTRON mbl
2R	9715965	2R_9715965_SNP [dm3] 2R_13828460_SNP [dm6]	G	T	4.086e^-4	0.788	UPSTREAM CG6329 INTRON CG6329	TF binding site BDTNP1_TFBS_dl
X	9915703	X_9915703_SNP [dm3] X_10021670_SNP [dm6]	G	T	4.091e^-4	0.788	INTRON Cht6
2R	11724908	2R_11724908_SNP [dm3] 2R_15837403_SNP [dm6]	C	T	4.092e^-4	0.788	INTRON tun	regulatory region REDfly_CRMs
2R	10368014	2R_10368014_SNP [dm3] 2R_14480509_SNP [dm6]	T	A	4.095e^-4	0.788	UPSTREAM L INTERGENIC	TF binding site mE1_TFBS_bab1
2R	13772179	2R_13772179_SNP [dm3] 2R_17884674_SNP [dm6]	T	G	4.102e^-4	0.789	INTRON Elk
2L	8448070	2L_8448070_SNP [dm3] 2L_8448070_SNP [dm6]	C	T	4.108e^-4	0.789	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4647084	3L_4647084_INS [dm3] 3L_4647084_INS [dm6]	T	TC	4.115e^-4	0.789	INTRON axo
3L	428280	3L_428280_SNP [dm3] 3L_428280_SNP [dm6]	T	C	4.118e^-4	0.789	INTERGENIC
2R	16863923	2R_16863923_SNP [dm3] 2R_20976418_SNP [dm6]	C	G	4.135e^-4	0.79	UPSTREAM CG9344 INTRON CG34115	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15031960	2L_15031960_SNP [dm3] 2L_15031960_SNP [dm6]	T	G	4.136e^-4	0.79	UPSTREAM CG31832 INTRON GABA-B-R1
X	17935662	X_17935662_SNP [dm3] X_18041629_SNP [dm6]	A	T	4.139e^-4	0.79	INTRON Sh
2R	18985584	2R_18985584_SNP [dm3] 2R_23098061_SNP [dm6]	T	C	4.140e^-4	0.79	INTERGENIC
X	17952250	X_17952250_SNP [dm3] X_18058217_SNP [dm6]	G	A	4.143e^-4	0.79	INTRON Sh
X	5208452	X_5208452_SNP [dm3] X_5314419_SNP [dm6]	C	T	4.162e^-4	0.793	SYNONYMOUS_CODING CG4198 DOWNSTREAM CG15930	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	4120991	X_4120991_SNP [dm3] X_4226958_SNP [dm6]	T	G	4.167e^-4	0.793	INTERGENIC
2L	16125163	2L_16125163_SNP [dm3] 2L_16125163_SNP [dm6]	G	A	4.173e^-4	0.794	INTERGENIC
2R	7004711	2R_7004711_SNP [dm3] 2R_11117206_SNP [dm6]	G	A	4.187e^-4	0.795	UPSTREAM luna DOWNSTREAM Cyp12d1-p INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15905886	2R_15905886_SNP [dm3] 2R_20018381_SNP [dm6]	C	G	4.188e^-4	0.795	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13844115	3L_13844115_SNP [dm3] 3L_13851015_SNP [dm6]	C	T	4.195e^-4	0.795	SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad
3L	8908321	3L_8908321_SNP [dm3] 3L_8915221_SNP [dm6]	C	T	4.202e^-4	0.795	UPSTREAM CR43970 INTRON Tsp66E
3L	10793233	3L_10793233_SNP [dm3] 3L_10800133_SNP [dm6]	A	C	4.204e^-4	0.795	INTERGENIC
X	16223024	X_16223024_SNP [dm3] X_16328991_SNP [dm6]	C	G	4.225e^-4	0.797	UTR_3_PRIME CG9919 DOWNSTREAM CalpC
3L	14816333	3L_14816333_SNP [dm3] 3L_14823233_SNP [dm6]	G	A	4.225e^-4	0.797	INTRON CG17839
X	17952259	X_17952259_SNP [dm3] X_18058226_SNP [dm6]	T	C	4.229e^-4	0.797	INTRON Sh
2R	13739800	2R_13739800_SNP [dm3] 2R_17852295_SNP [dm6]	G	T	4.235e^-4	0.797	UPSTREAM CG30323 INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	722516	3L_722516_SNP [dm3] 3L_722516_SNP [dm6]	C	T	4.236e^-4	0.797	INTERGENIC
X	18636906	X_18636906_SNP [dm3] X_18742873_SNP [dm6]	C	T	4.263e^-4	0.798	INTERGENIC
3R	21591753	3R_21591753_SNP [dm3] 3R_25766031_SNP [dm6]	T	C	4.267e^-4	0.798	INTERGENIC
3L	10702392	3L_10702392_SNP [dm3] 3L_10709292_SNP [dm6]	G	T	4.273e^-4	0.798	INTERGENIC
3L	2501481	3L_2501481_DEL [dm3] 3L_2501481_DEL [dm6]	GAG	G	4.275e^-4	0.798	INTRON CG16758

By genomic position
Variant impact
Gene name

Wing_Intervein_Area3 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results