DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.302e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.09178
In_3R_Mo	0.03468

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	5.1555	0.0759
In_3R_Mo	6.7317	0.0345

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2706 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	712385	3L_712385_DEL [dm3] 3L_712385_DEL [dm6]	TA	T	5.347e^-7	0.262	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712384	3L_712384_SNP [dm3] 3L_712384_SNP [dm6]	T	C	6.332e^-7	0.262	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712376	3L_712376_SNP [dm3] 3L_712376_SNP [dm6]	G	A	6.354e^-7	0.262	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712235	3L_712235_SNP [dm3] 3L_712235_SNP [dm6]	C	T	6.947e^-7	0.262	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	4340520	3R_4340520_SNP [dm3] 3R_8514798_SNP [dm6]	T	A	1.086e^-6	0.262	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	712399	3L_712399_SNP [dm3] 3L_712399_SNP [dm6]	A	T	1.110e^-6	0.262	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712348	3L_712348_SNP [dm3] 3L_712348_SNP [dm6]	G	T	1.139e^-6	0.262	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712388	3L_712388_DEL [dm3] 3L_712388_DEL [dm6]	AAT	A	1.469e^-6	0.262	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712423	3L_712423_SNP [dm3] 3L_712423_SNP [dm6]	G	C	1.616e^-6	0.262	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712337	3L_712337_SNP [dm3] 3L_712337_SNP [dm6]	G	T	2.049e^-6	0.262	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	3437649	2L_3437649_SNP [dm3] 2L_3437649_SNP [dm6]	A	T	2.076e^-6	0.262	INTERGENIC
X	4093939	X_4093939_SNP [dm3] X_4199906_SNP [dm6]	A	C	2.237e^-6	0.262	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	14919578	3L_14919578_SNP [dm3] 3L_14926478_SNP [dm6]	A	G	2.288e^-6	0.262	UTR_5_PRIME DCX-EMAP INTRON DCX-EMAP
3L	4737896	3L_4737896_SNP [dm3] 3L_4737896_SNP [dm6]	G	A	2.375e^-6	0.262	INTRON RhoGEF64C
3R	4339621	3R_4339621_SNP [dm3] 3R_8513899_SNP [dm6]	C	G	2.394e^-6	0.262	UPSTREAM Or85c INTERGENIC
3L	712377	3L_712377_SNP [dm3] 3L_712377_SNP [dm6]	A	C	2.440e^-6	0.262	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712226	3L_712226_SNP [dm3] 3L_712226_SNP [dm6]	C	A	2.441e^-6	0.262	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	712374	3L_712374_SNP [dm3] 3L_712374_SNP [dm6]	G	C	2.511e^-6	0.262	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	4339924	3R_4339924_SNP [dm3] 3R_8514202_SNP [dm6]	A	G	2.763e^-6	0.273	INTERGENIC
X	9287766	X_9287766_SNP [dm3] X_9393733_SNP [dm6]	T	C	3.191e^-6	0.277	INTRON mgl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	5448817	3R_5448817_SNP [dm3] 3R_9623095_SNP [dm6]	C	A	3.213e^-6	0.277	INTRON CG8312	TF binding site mE1_TFBS_cad
3L	4737895	3L_4737895_SNP [dm3] 3L_4737895_SNP [dm6]	A	G	3.456e^-6	0.277	INTRON RhoGEF64C
3L	2645866	3L_2645866_SNP [dm3] 3L_2645866_SNP [dm6]	A	G	3.458e^-6	0.277	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16725723	3L_16725723_SNP [dm3] 3L_16732623_SNP [dm6]	C	G	4.717e^-6	0.277	UPSTREAM CG9701 INTERGENIC
X	3035763	X_3035763_DEL [dm3] X_3141730_DEL [dm6]	GG	G	4.772e^-6	0.277	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	4416355	2L_4416355_SNP [dm3] 2L_4416355_SNP [dm6]	C	G	4.888e^-6	0.277	INTRON CG15431
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	4.890e^-6	0.277	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14919557	3L_14919557_SNP [dm3] 3L_14926457_SNP [dm6]	T	G	4.941e^-6	0.277	UTR_5_PRIME DCX-EMAP INTRON DCX-EMAP	TF binding site mE1_TFBS_cad
3L	711790	3L_711790_SNP [dm3] 3L_711790_SNP [dm6]	A	T	4.983e^-6	0.277	UTR_5_PRIME CG13896	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	712335	3L_712335_SNP [dm3] 3L_712335_SNP [dm6]	T	A	5.034e^-6	0.277	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	15469662	2L_15469662_SNP [dm3] 2L_15469662_SNP [dm6]	A	T	5.474e^-6	0.277	UPSTREAM CR45353 INTERGENIC
3R	13600672	3R_13600672_SNP [dm3] 3R_17774950_SNP [dm6]	C	T	5.485e^-6	0.277	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	712319	3L_712319_INS [dm3] 3L_712319_INS [dm6]	C	CA	5.495e^-6	0.277	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712342	3L_712342_SNP [dm3] 3L_712342_SNP [dm6]	A	T	5.495e^-6	0.277	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	14489497	3L_14489497_SNP [dm3] 3L_14496397_SNP [dm6]	T	A	5.560e^-6	0.277	INTRON bbg	TF binding site mE1_TFBS_cad
X	3035757	X_3035757_SNP [dm3] X_3141724_SNP [dm6]	A	T	5.660e^-6	0.277	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	6788786	X_6788786_SNP [dm3] X_6894753_SNP [dm6]	A	C	5.815e^-6	0.277	INTERGENIC
3L	711857	3L_711857_SNP [dm3] 3L_711857_SNP [dm6]	A	C	5.917e^-6	0.277	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	17324045	2L_17324045_SNP [dm3] 2L_17324045_SNP [dm6]	T	C	6.097e^-6	0.277	INTERGENIC
3R	4342921	3R_4342921_SNP [dm3] 3R_8517199_SNP [dm6]	C	T	6.154e^-6	0.277	UPSTREAM CG11737 INTERGENIC
3L	14489486	3L_14489486_SNP [dm3] 3L_14496386_SNP [dm6]	A	C	6.209e^-6	0.277	INTRON bbg	TF binding site mE1_TFBS_cad
3L	14489495	3L_14489495_SNP [dm3] 3L_14496395_SNP [dm6]	G	A	6.209e^-6	0.277	INTRON bbg	TF binding site mE1_TFBS_cad
X	12754429	X_12754429_SNP [dm3] X_12860396_SNP [dm6]	C	A	6.855e^-6	0.297	INTRON Pde9
3R	27127740	3R_27127740_SNP [dm3] 3R_31302018_SNP [dm6]	G	C	7.064e^-6	0.297	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15469667	2L_15469667_SNP [dm3] 2L_15469667_SNP [dm6]	T	G	7.411e^-6	0.297	UPSTREAM CR45353 INTERGENIC
3L	712455	3L_712455_SNP [dm3] 3L_712455_SNP [dm6]	C	T	7.422e^-6	0.297	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	8156894	X_8156894_INS [dm3] X_8262861_INS [dm6]	T	TTCCACGCTCCGAACCAAAT...	7.448e^-6	0.297	INTRON CG1632	TF binding site BDTNP1_TFBS_da
3R	25912708	3R_25912708_SNP [dm3] 3R_30086986_SNP [dm6]	C	A	7.711e^-6	0.299	INTRON sima
X	19421607	X_19421607_DEL [dm3] X_19527574_DEL [dm6]	CAC	C	7.850e^-6	0.299	UPSTREAM CoRest INTRON CoRest	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	5448700	3R_5448700_SNP [dm3] 3R_9622978_SNP [dm6]	G	T	8.090e^-6	0.299	UTR_5_PRIME CG8312 INTRON CG8312
3L	712343	3L_712343_SNP [dm3] 3L_712343_SNP [dm6]	A	C	8.137e^-6	0.299	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	8156849	X_8156849_SNP [dm3] X_8262816_SNP [dm6]	T	C	8.501e^-6	0.305	INTRON CG1632	TF binding site BDTNP1_TFBS_da
3L	9783263	3L_9783263_SNP [dm3] 3L_9790163_SNP [dm6]	T	G	8.858e^-6	0.305	DOWNSTREAM Zasp67 INTRON Zasp67	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	9111772	2L_9111772_SNP [dm3] 2L_9111772_SNP [dm6]	G	C	8.895e^-6	0.305	UPSTREAM Or30a INTERGENIC
2L	1239660	2L_1239660_SNP [dm3] 2L_1239660_SNP [dm6]	G	A	8.934e^-6	0.305	UPSTREAM CG5397 INTERGENIC
X	13998264	X_13998264_SNP [dm3] X_14104231_SNP [dm6]	C	G	9.159e^-6	0.307	UPSTREAM tRNA:S4:12Ee & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	712323	3L_712323_SNP [dm3] 3L_712323_SNP [dm6]	T	A	9.561e^-6	0.314	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	5447308	3R_5447308_SNP [dm3] 3R_9621586_SNP [dm6]	G	T	9.753e^-6	0.315	NON_SYNONYMOUS_CODING CG8312	TF binding site mE1_TFBS_cad
3R	23141757	3R_23141757_SNP [dm3] 3R_27316035_SNP [dm6]	T	A	1.004e^-5	0.319	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	11525805	3L_11525805_SNP [dm3] 3L_11532705_SNP [dm6]	G	A	1.058e^-5	0.32	INTRON Mob2
3L	712322	3L_712322_SNP [dm3] 3L_712322_SNP [dm6]	A	G	1.068e^-5	0.32	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	1.073e^-5	0.32	INTRON dnc
3L	4737859	3L_4737859_SNP [dm3] 3L_4737859_SNP [dm6]	A	G	1.107e^-5	0.32	INTRON RhoGEF64C
X	14678933	X_14678933_SNP [dm3] X_14784900_SNP [dm6]	A	C	1.107e^-5	0.32	UTR_3_PRIME Ag5r UPSTREAM Ag5r2 DOWNSTREAM Ag5r
3R	24829701	3R_24829701_SNP [dm3] 3R_29003979_SNP [dm6]	C	G	1.110e^-5	0.32	INTRON wat
3R	27128046	3R_27128046_SNP [dm3] 3R_31302324_SNP [dm6]	C	T	1.125e^-5	0.32	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_inv
3R	24353994	3R_24353994_SNP [dm3] 3R_28528272_SNP [dm6]	G	A	1.169e^-5	0.323	NON_SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4349280	3R_4349280_SNP [dm3] 3R_8523558_SNP [dm6]	T	C	1.171e^-5	0.323	UPSTREAM CG31259 DOWNSTREAM CG31454 INTERGENIC
3R	5448651	3R_5448651_SNP [dm3] 3R_9622929_SNP [dm6]	A	T	1.222e^-5	0.327	UPSTREAM CG8312 INTRON CG8312
3L	1727047	3L_1727047_SNP [dm3] 3L_1727047_SNP [dm6]	G	A	1.229e^-5	0.327	INTRON drpr
X	11121667	X_11121667_SNP [dm3] X_11227634_SNP [dm6]	T	C	1.240e^-5	0.327	INTRON CG44422
2L	9103236	2L_9103236_SNP [dm3] 2L_9103236_SNP [dm6]	C	T	1.368e^-5	0.348	INTERGENIC
3R	23141761	3R_23141761_INS [dm3] 3R_27316039_INS [dm6]	G	GG	1.374e^-5	0.348	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	712501	3L_712501_SNP [dm3] 3L_712501_SNP [dm6]	C	G	1.392e^-5	0.348	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	21160839	X_21160839_SNP [dm3] X_21289812_SNP [dm6]	T	C	1.394e^-5	0.348	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27146681	3R_27146681_SNP [dm3] 3R_31320959_SNP [dm6]	C	A	1.471e^-5	0.362	INTRON CG34347
3R	27136665	3R_27136665_SNP [dm3] 3R_31310943_SNP [dm6]	G	A	1.486e^-5	0.362	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	4841343	3L_4841343_SNP [dm3] 3L_4841343_SNP [dm6]	A	C	1.609e^-5	0.384	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	19553902	2R_19553902_SNP [dm3] 2R_23666379_SNP [dm6]	G	C	1.675e^-5	0.384	UPSTREAM Pde8 INTRON Pde8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13487564	3L_13487564_SNP [dm3] 3L_13494464_SNP [dm6]	G	T	1.718e^-5	0.384	INTRON Tgi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	1675714	2L_1675714_SNP [dm3] 2L_1675714_SNP [dm6]	T	A	1.722e^-5	0.384	INTRON chinmo
2L	1675720	2L_1675720_SNP [dm3] 2L_1675720_SNP [dm6]	C	G	1.722e^-5	0.384	INTRON chinmo
3L	14489539	3L_14489539_INS [dm3] 3L_14496439_INS [dm6]	A	ATTTTCTA	1.726e^-5	0.384	INTRON bbg
2R	15874958	2R_15874958_SNP [dm3] 2R_19987453_SNP [dm6]	G	A	1.755e^-5	0.384	INTERGENIC
2L	7297033	2L_7297033_SNP [dm3] 2L_7297033_SNP [dm6]	A	T	1.756e^-5	0.384	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	7993136	X_7993136_SNP [dm3] X_8099103_SNP [dm6]	C	A	1.773e^-5	0.384	INTRON CG2258	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1734436	3L_1734436_SNP [dm3] 3L_1734436_SNP [dm6]	A	G	1.785e^-5	0.384	SPLICE_SITE_REGION Oseg4 INTRON Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1733503	3L_1733503_SNP [dm3] 3L_1733503_SNP [dm6]	G	A	1.900e^-5	0.384	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1734655	3L_1734655_SNP [dm3] 3L_1734655_SNP [dm6]	G	A	1.936e^-5	0.384	SYNONYMOUS_CODING Oseg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10565818	2L_10565818_SNP [dm3] 2L_10565818_SNP [dm6]	A	T	1.972e^-5	0.384	INTRON Trim9
2R	11736214	2R_11736214_SNP [dm3] 2R_15848709_SNP [dm6]	A	T	1.973e^-5	0.384	UTR_5_PRIME tun
3R	27136626	3R_27136626_SNP [dm3] 3R_31310904_SNP [dm6]	G	T	1.977e^-5	0.384	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	7479975	3L_7479975_SNP [dm3] 3L_7486875_SNP [dm6]	T	C	2.005e^-5	0.384	SYNONYMOUS_CODING mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4737892	3L_4737892_SNP [dm3] 3L_4737892_SNP [dm6]	T	C	2.059e^-5	0.384	INTRON RhoGEF64C
2L	17333598	2L_17333598_SNP [dm3] 2L_17333598_SNP [dm6]	G	A	2.091e^-5	0.384	INTERGENIC
3L	837693	3L_837693_SNP [dm3] 3L_837693_SNP [dm6]	A	C	2.094e^-5	0.384	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3R	27136505	3R_27136505_SNP [dm3] 3R_31310783_SNP [dm6]	T	A	2.112e^-5	0.384	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	24485802	3R_24485802_SNP [dm3] 3R_28660080_SNP [dm6]	A	G	2.118e^-5	0.384	INTERGENIC
X	21160844	X_21160844_SNP [dm3] X_21289817_SNP [dm6]	G	C	2.121e^-5	0.384	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	2.126e^-5	0.384	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	14489459	3L_14489459_SNP [dm3] 3L_14496359_SNP [dm6]	G	C	2.145e^-5	0.384	INTRON bbg	TF binding site mE1_TFBS_cad
3R	27129738	3R_27129738_SNP [dm3] 3R_31304016_SNP [dm6]	G	A	2.163e^-5	0.384	SYNONYMOUS_CODING CG11340
2L	2435458	2L_2435458_SNP [dm3] 2L_2435458_SNP [dm6]	T	A	2.166e^-5	0.384	INTRON dpp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	5129982	3R_5129982_SNP [dm3] 3R_9304260_SNP [dm6]	C	G	2.170e^-5	0.384	INTRON CG8861
X	13095658	X_13095658_SNP [dm3] X_13201625_SNP [dm6]	C	T	2.203e^-5	0.384	SYNONYMOUS_CODING CG44437 INTRON sno	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	14227406	X_14227406_SNP [dm3] X_14333373_SNP [dm6]	T	C	2.221e^-5	0.384	INTRON dpr8
3R	5452909	3R_5452909_SNP [dm3] 3R_9627187_SNP [dm6]	T	A	2.240e^-5	0.384	UPSTREAM CG8319 & 1 other INTERGENIC	TF binding site mE1_TFBS_ttk
3R	4364876	3R_4364876_SNP [dm3] 3R_8539154_SNP [dm6]	A	G	2.243e^-5	0.384	INTERGENIC
3R	5446560	3R_5446560_DEL [dm3] 3R_9620838_DEL [dm6]	AAAACAGTGG	A	2.248e^-5	0.384	INTRON CG8312
3R	16485754	3R_16485754_DEL [dm3] 3R_20660032_DEL [dm6]	AG	A	2.255e^-5	0.384	UPSTREAM Nep4 INTERGENIC
3L	18202542	3L_18202542_SNP [dm3] 3L_18209442_SNP [dm6]	A	T	2.362e^-5	0.391	INTERGENIC
2L	2314973	2L_2314973_SNP [dm3] 2L_2314973_SNP [dm6]	C	T	2.368e^-5	0.391	INTRON CG9967 & 1 other
3R	24829734	3R_24829734_SNP [dm3] 3R_29004012_SNP [dm6]	A	G	2.379e^-5	0.391	INTRON wat
2R	19553891	2R_19553891_SNP [dm3] 2R_23666368_SNP [dm6]	C	T	2.394e^-5	0.391	UPSTREAM Pde8 INTRON Pde8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14471217	3L_14471217_SNP [dm3] 3L_14478117_SNP [dm6]	T	C	2.415e^-5	0.391	INTRON bbg
3L	14565106	3L_14565106_DEL [dm3] 3L_14572006_DEL [dm6]	TT	T	2.451e^-5	0.391	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11736242	2R_11736242_SNP [dm3] 2R_15848737_SNP [dm6]	A	T	2.460e^-5	0.391	UTR_5_PRIME tun
3L	1730245	3L_1730245_SNP [dm3] 3L_1730245_SNP [dm6]	A	G	2.463e^-5	0.391	DOWNSTREAM Oseg4 INTRON drpr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	14489501	3L_14489501_DEL [dm3] 3L_14496401_DEL [dm6]	TA	T	2.523e^-5	0.392	INTRON bbg	TF binding site mE1_TFBS_cad
X	10443026	X_10443026_SNP [dm3] X_10548993_SNP [dm6]	C	T	2.523e^-5	0.392	INTRON spri
2L	9105472	2L_9105472_SNP [dm3] 2L_9105472_SNP [dm6]	A	T	2.529e^-5	0.392	INTERGENIC
3L	1734509	3L_1734509_SNP [dm3] 3L_1734509_SNP [dm6]	G	A	2.571e^-5	0.395	SYNONYMOUS_CODING Oseg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	4094020	X_4094020_SNP [dm3] X_4199987_SNP [dm6]	T	C	2.622e^-5	0.4	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26361338	3R_26361338_SNP [dm3] 3R_30535616_SNP [dm6]	C	A	2.696e^-5	0.408	INTRON tmod
3R	26618541	3R_26618541_SNP [dm3] 3R_30792819_SNP [dm6]	A	G	2.763e^-5	0.411	SYNONYMOUS_CODING wts	TF binding site mE1_TFBS_chinmo
3R	4350226	3R_4350226_SNP [dm3] 3R_8524504_SNP [dm6]	C	T	2.805e^-5	0.411	SYNONYMOUS_CODING CG31259 DOWNSTREAM CG31454
2L	2435443	2L_2435443_SNP [dm3] 2L_2435443_SNP [dm6]	G	T	2.824e^-5	0.411	INTRON dpp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	27100391	3R_27100391_DEL [dm3] 3R_31274669_DEL [dm6]	AA	A	2.843e^-5	0.411	INTERGENIC
3L	14489439	3L_14489439_SNP [dm3] 3L_14496339_SNP [dm6]	A	G	2.871e^-5	0.411	INTRON bbg	TF binding site mE1_TFBS_cad
2L	13211544	2L_13211544_SNP [dm3] 2L_13211544_SNP [dm6]	T	C	2.892e^-5	0.411	NON_SYNONYMOUS_CODING CG15482 DOWNSTREAM Pect & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15090507	2L_15090507_SNP [dm3] 2L_15090507_SNP [dm6]	T	C	2.900e^-5	0.411	INTRON CG15270
3L	12900542	3L_12900542_SNP [dm3] 3L_12907442_SNP [dm6]	A	G	2.906e^-5	0.411	INTERGENIC
3L	1731975	3L_1731975_SNP [dm3] 3L_1731975_SNP [dm6]	C	T	2.913e^-5	0.411	SYNONYMOUS_CODING Oseg4 UPSTREAM drpr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	4364582	3R_4364582_SNP [dm3] 3R_8538860_SNP [dm6]	T	G	2.982e^-5	0.412	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	12353263	3R_12353263_SNP [dm3] 3R_16527541_SNP [dm6]	C	T	2.989e^-5	0.412	INTRON CG42342	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17908230	2R_17908230_DEL [dm3] 2R_22020725_DEL [dm6]	AA	A	3.032e^-5	0.412	INTRON CG34370
3R	13600157	3R_13600157_SNP [dm3] 3R_17774435_SNP [dm6]	T	G	3.034e^-5	0.412	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
2R	3178769	2R_3178769_SNP [dm3] 2R_7291264_SNP [dm6]	G	A	3.039e^-5	0.412	INTRON pwn	TF binding site mE1_TFBS_cad
X	13095625	X_13095625_SNP [dm3] X_13201592_SNP [dm6]	G	A	3.058e^-5	0.412	SYNONYMOUS_CODING CG44437 INTRON sno	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	20215260	X_20215260_SNP [dm3] X_20344233_SNP [dm6]	A	C	3.127e^-5	0.419	INTERGENIC	transposable element FlyBase
2R	6016548	2R_6016548_SNP [dm3] 2R_10129043_SNP [dm6]	C	T	3.236e^-5	0.43	INTRON gem	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	17767309	3R_17767309_INS [dm3] 3R_21941587_INS [dm6]	T	TGTATATTTACGCTTT...	3.287e^-5	0.434	INTERGENIC
X	20262267	X_20262267_SNP [dm3] X_20391240_SNP [dm6]	A	G	3.313e^-5	0.434	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27125014	3R_27125014_SNP [dm3] 3R_31299292_SNP [dm6]	G	T	3.366e^-5	0.438	INTERGENIC
3L	7369219	3L_7369219_SNP [dm3] 3L_7376119_SNP [dm6]	G	C	3.474e^-5	0.449	INTRON SMSr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	15874982	2R_15874982_SNP [dm3] 2R_19987477_SNP [dm6]	C	T	3.498e^-5	0.449	INTERGENIC
X	11756868	X_11756868_SNP [dm3] X_11862835_SNP [dm6]	G	T	3.575e^-5	0.451	SYNONYMOUS_CODING ATP7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27125777	3R_27125777_SNP [dm3] 3R_31300055_SNP [dm6]	G	A	3.607e^-5	0.451	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	14813948	3L_14813948_SNP [dm3] 3L_14820848_SNP [dm6]	G	A	3.619e^-5	0.451	INTRON CG17839
2R	19553962	2R_19553962_SNP [dm3] 2R_23666439_SNP [dm6]	G	A	3.620e^-5	0.451	UPSTREAM Pde8 INTRON Pde8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	4354693	3R_4354693_SNP [dm3] 3R_8528971_SNP [dm6]	C	T	3.637e^-5	0.451	UPSTREAM CG11741 INTERGENIC	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	1732632	3L_1732632_SNP [dm3] 3L_1732632_SNP [dm6]	A	G	3.657e^-5	0.451	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12059294	2R_12059294_SNP [dm3] 2R_16171789_SNP [dm6]	A	G	3.703e^-5	0.452	SYNONYMOUS_CODING Ptp52F UPSTREAM CG8435	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	27125093	3R_27125093_SNP [dm3] 3R_31299371_SNP [dm6]	G	T	3.751e^-5	0.452	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	268796	2L_268796_DEL [dm3] 2L_268796_DEL [dm6]	AA	A	3.769e^-5	0.452	UPSTREAM CG3345 INTRON CG3645
X	12923235	X_12923235_SNP [dm3] X_13029202_SNP [dm6]	A	T	3.781e^-5	0.452	INTRON rad
3R	25588806	3R_25588806_SNP [dm3] 3R_29763084_SNP [dm6]	A	G	3.785e^-5	0.452	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8156863	X_8156863_SNP [dm3] X_8262830_SNP [dm6]	T	C	3.817e^-5	0.452	INTRON CG1632	TF binding site BDTNP1_TFBS_da
3R	4341305	3R_4341305_SNP [dm3] 3R_8515583_SNP [dm6]	G	T	3.845e^-5	0.452	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	4340078	3R_4340078_DEL [dm3] 3R_8514356_DEL [dm6]	GATGTGGGAGTGA...	G	3.873e^-5	0.452	INTERGENIC
X	16228239	X_16228239_INS [dm3] X_16334206_INS [dm6]	A	AA	3.907e^-5	0.452	UTR_5_PRIME Dsp1 UPSTREAM CG9921 INTRON Dsp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16727030	3L_16727030_SNP [dm3] 3L_16733930_SNP [dm6]	T	C	3.909e^-5	0.452	INTRON CG9701
3R	4364658	3R_4364658_SNP [dm3] 3R_8538936_SNP [dm6]	T	A	3.973e^-5	0.455	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	5448643	3R_5448643_SNP [dm3] 3R_9622921_SNP [dm6]	C	T	4.014e^-5	0.455	UPSTREAM CG8312 INTRON CG8312
3R	15101654	3R_15101654_DEL [dm3] 3R_19275932_DEL [dm6]	AA	A	4.040e^-5	0.455	INTERGENIC
3R	27129265	3R_27129265_SNP [dm3] 3R_31303543_SNP [dm6]	T	C	4.043e^-5	0.455	SYNONYMOUS_CODING CG11340	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1731275	3L_1731275_SNP [dm3] 3L_1731275_SNP [dm6]	A	G	4.051e^-5	0.455	UTR_3_PRIME Oseg4 UPSTREAM drpr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	17324010	2L_17324010_SNP [dm3] 2L_17324010_SNP [dm6]	G	T	4.148e^-5	0.461	INTERGENIC
3R	16485752	3R_16485752_SNP [dm3] 3R_20660030_SNP [dm6]	G	C	4.155e^-5	0.461	UPSTREAM Nep4 INTERGENIC
3L	440017	3L_440017_SNP [dm3] 3L_440017_SNP [dm6]	T	C	4.293e^-5	0.473	INTRON klar
3R	13682475	3R_13682475_SNP [dm3] 3R_17856753_SNP [dm6]	G	A	4.310e^-5	0.473	INTRON tinc
2L	15469687	2L_15469687_SNP [dm3] 2L_15469687_SNP [dm6]	T	A	4.356e^-5	0.474	UPSTREAM CR45353 INTERGENIC
3R	3469607	3R_3469607_SNP [dm3] 3R_7643885_SNP [dm6]	C	T	4.372e^-5	0.474	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4364688	3R_4364688_SNP [dm3] 3R_8538966_SNP [dm6]	A	G	4.460e^-5	0.481	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	13415564	2R_13415564_SNP [dm3] 2R_17528059_SNP [dm6]	G	A	4.559e^-5	0.488	SYNONYMOUS_CODING Patronin
2L	703091	2L_703091_SNP [dm3] 2L_703091_SNP [dm6]	A	T	4.640e^-5	0.494	INTRON ds	TF binding site BDTNP1_TFBS_dl
2R	17904309	2R_17904309_SNP [dm3] 2R_22016804_SNP [dm6]	T	A	4.679e^-5	0.496	INTRON CG34370
3L	6714335	3L_6714335_SNP [dm3] 3L_6721235_SNP [dm6]	A	T	4.804e^-5	0.502	INTERGENIC
3R	24829722	3R_24829722_SNP [dm3] 3R_29004000_SNP [dm6]	T	C	4.808e^-5	0.502	INTRON wat
X	5702342	X_5702342_SNP [dm3] X_5808309_SNP [dm6]	G	A	4.821e^-5	0.502	UPSTREAM Prosbeta2R1 INTERGENIC
3R	10272634	3R_10272634_SNP [dm3] 3R_14446912_SNP [dm6]	T	C	4.891e^-5	0.506	INTRON cv-c
2L	17891617	2L_17891617_SNP [dm3] 2L_17891617_SNP [dm6]	C	T	4.913e^-5	0.506	INTERGENIC
3R	15077609	3R_15077609_SNP [dm3] 3R_19251887_SNP [dm6]	C	A	4.971e^-5	0.508	INTERGENIC
3L	10866281	3L_10866281_SNP [dm3] 3L_10873181_SNP [dm6]	G	A	4.988e^-5	0.508	SYNONYMOUS_CODING tna	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8628881	X_8628881_SNP [dm3] X_8734848_SNP [dm6]	G	T	5.024e^-5	0.509	INTERGENIC
2L	10785598	2L_10785598_SNP [dm3] 2L_10785598_SNP [dm6]	A	T	5.057e^-5	0.509	INTRON CG31869 EXON CR44582
2L	4306167	2L_4306167_SNP [dm3] 2L_4306167_SNP [dm6]	A	G	5.106e^-5	0.509	DOWNSTREAM tutl INTRON tutl	TF binding site mE1_TFBS_chinmo
3L	6092209	3L_6092209_SNP [dm3] 3L_6099109_SNP [dm6]	T	C	5.111e^-5	0.509	INTRON Ets65A
2L	9105311	2L_9105311_SNP [dm3] 2L_9105311_SNP [dm6]	G	T	5.129e^-5	0.509	INTERGENIC
2L	7207266	2L_7207266_SNP [dm3] 2L_7207266_SNP [dm6]	T	A	5.180e^-5	0.511	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784
2R	12392713	2R_12392713_SNP [dm3] 2R_16505208_SNP [dm6]	G	A	5.220e^-5	0.512	INTRON Sema-2a
2L	9105664	2L_9105664_SNP [dm3] 2L_9105664_SNP [dm6]	G	A	5.254e^-5	0.513	INTERGENIC
3R	16485807	3R_16485807_SNP [dm3] 3R_20660085_SNP [dm6]	G	A	5.411e^-5	0.515	UPSTREAM Nep4 INTERGENIC	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1 transposable element FlyBase
3R	9817342	3R_9817342_INS [dm3] 3R_13991620_INS [dm6]	C	CCATG	5.418e^-5	0.515	INTRON rdx
3R	9817346	3R_9817346_INS [dm3] 3R_13991624_INS [dm6]	T	TGATT	5.418e^-5	0.515	INTRON rdx
3L	15001018	3L_15001018_SNP [dm3] 3L_15007918_SNP [dm6]	T	C	5.429e^-5	0.515	INTRON Reck
2L	7100238	2L_7100238_INS [dm3] 2L_7100238_INS [dm6]	G	GG	5.499e^-5	0.515	INTRON Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	26321582	3R_26321582_SNP [dm3] 3R_30495860_SNP [dm6]	G	A	5.511e^-5	0.515	DOWNSTREAM PH4alphaNE1 INTRON PH4alphaMP
3L	22883797	3L_22883797_SNP [dm3] 3L_22890697_SNP [dm6]	A	G	5.524e^-5	0.515	INTRON slif	transposable element FlyBase
3R	10272628	3R_10272628_SNP [dm3] 3R_14446906_SNP [dm6]	C	T	5.544e^-5	0.515	INTRON cv-c
3L	7475914	3L_7475914_SNP [dm3] 3L_7482814_SNP [dm6]	G	T	5.567e^-5	0.515	INTERGENIC
2L	928817	2L_928817_SNP [dm3] 2L_928817_SNP [dm6]	C	G	5.592e^-5	0.515	INTRON CG4341
2R	19553896	2R_19553896_SNP [dm3] 2R_23666373_SNP [dm6]	C	T	5.599e^-5	0.515	UPSTREAM Pde8 INTRON Pde8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8447278	2L_8447278_SNP [dm3] 2L_8447278_SNP [dm6]	T	G	5.662e^-5	0.515	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	17302534	2L_17302534_SNP [dm3] 2L_17302534_SNP [dm6]	A	G	5.662e^-5	0.515	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17302565	2L_17302565_SNP [dm3] 2L_17302565_SNP [dm6]	C	A	5.713e^-5	0.515	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3873722	3L_3873722_SNP [dm3] 3L_3873722_SNP [dm6]	A	C	5.735e^-5	0.515	INTERGENIC	TF binding site mE1_TFBS_cad
2R	13415561	2R_13415561_SNP [dm3] 2R_17528056_SNP [dm6]	A	G	5.828e^-5	0.515	SYNONYMOUS_CODING Patronin
3R	5466617	3R_5466617_SNP [dm3] 3R_9640895_SNP [dm6]	T	A	5.855e^-5	0.515	INTRON Dh44
3L	18113039	3L_18113039_SNP [dm3] 3L_18119939_SNP [dm6]	C	A	5.950e^-5	0.515	SYNONYMOUS_CODING CG7341 DOWNSTREAM CG32195 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1986147	2L_1986147_SNP [dm3] 2L_1986147_SNP [dm6]	C	T	5.950e^-5	0.515	INTRON Got2
2L	2435417	2L_2435417_SNP [dm3] 2L_2435417_SNP [dm6]	T	C	5.956e^-5	0.515	INTRON dpp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	13136787	X_13136787_SNP [dm3] X_13242754_SNP [dm6]	C	T	5.959e^-5	0.515	INTRON mew	TF binding site BDTNP1_TFBS_da
X	13095747	X_13095747_SNP [dm3] X_13201714_SNP [dm6]	C	T	6.032e^-5	0.515	NON_SYNONYMOUS_CODING CG44437 INTRON sno	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	13272867	3L_13272867_SNP [dm3] 3L_13279767_SNP [dm6]	A	G	6.050e^-5	0.515	UPSTREAM tRNA:CR32123:Psi DOWNSTREAM caps INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	6788737	X_6788737_SNP [dm3] X_6894704_SNP [dm6]	T	G	6.062e^-5	0.515	INTERGENIC
3L	18202714	3L_18202714_SNP [dm3] 3L_18209614_SNP [dm6]	T	G	6.129e^-5	0.515	INTERGENIC
3L	11169351	3L_11169351_SNP [dm3] 3L_11176251_SNP [dm6]	C	A	6.176e^-5	0.515	UTR_3_PRIME CG14142 DOWNSTREAM GlcAT-P
3R	4346787	3R_4346787_SNP [dm3] 3R_8521065_SNP [dm6]	C	T	6.209e^-5	0.515	SYNONYMOUS_CODING CG11737 UPSTREAM CG31454
3R	1686134	3R_1686134_SNP [dm3] 3R_5860412_SNP [dm6]	A	C	6.226e^-5	0.515	SPLICE_SITE_REGION CG2017 INTRON CG2017
X	21923107	X_21923107_SNP [dm3] X_22521271_SNP [dm6]	A	C	6.277e^-5	0.515	INTRON CG17600
3L	9515093	3L_9515093_SNP [dm3] 3L_9521993_SNP [dm6]	C	G	6.337e^-5	0.515	INTRON CG33700
3R	24791488	3R_24791488_SNP [dm3] 3R_28965766_SNP [dm6]	A	C	6.342e^-5	0.515	INTRON CG14521
2L	7100231	2L_7100231_SNP [dm3] 2L_7100231_SNP [dm6]	T	G	6.393e^-5	0.515	INTRON Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	11435348	3R_11435348_SNP [dm3] 3R_15609626_SNP [dm6]	A	G	6.394e^-5	0.515	INTERGENIC
2R	17028286	2R_17028286_SNP [dm3] 2R_21140781_SNP [dm6]	C	A	6.408e^-5	0.515	UPSTREAM Magi INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	6374552	3L_6374552_SNP [dm3] 3L_6381452_SNP [dm6]	C	T	6.418e^-5	0.515	INTERGENIC
3R	22596495	3R_22596495_SNP [dm3] 3R_26770773_SNP [dm6]	T	G	6.429e^-5	0.515	DOWNSTREAM CR45563 INTERGENIC
3L	1731091	3L_1731091_SNP [dm3] 3L_1731091_SNP [dm6]	C	T	6.436e^-5	0.515	UTR_5_PRIME drpr UTR_3_PRIME Oseg4 DOWNSTREAM Oseg4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9104800	2L_9104800_SNP [dm3] 2L_9104800_SNP [dm6]	C	T	6.532e^-5	0.515	INTERGENIC
3R	19217624	3R_19217624_SNP [dm3] 3R_23391902_SNP [dm6]	G	A	6.554e^-5	0.515	INTERGENIC
2L	17333597	2L_17333597_SNP [dm3] 2L_17333597_SNP [dm6]	A	G	6.566e^-5	0.515	INTERGENIC
2L	17289286	2L_17289286_DEL [dm3] 2L_17289286_DEL [dm6]	TCAAAAATGATTCTTTACGT...	T	6.576e^-5	0.515	INTERGENIC
2L	702204	2L_702204_SNP [dm3] 2L_702204_SNP [dm6]	T	C	6.601e^-5	0.515	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3R	1705378	3R_1705378_SNP [dm3] 3R_5879656_SNP [dm6]	T	G	6.603e^-5	0.515	SYNONYMOUS_CODING CG34113 INTRON CG34113
3R	5452775	3R_5452775_SNP [dm3] 3R_9627053_SNP [dm6]	T	G	6.653e^-5	0.515	UPSTREAM CG8319 & 1 other INTERGENIC
3L	9515094	3L_9515094_SNP [dm3] 3L_9521994_SNP [dm6]	T	A	6.682e^-5	0.515	INTRON CG33700
3L	15741827	3L_15741827_SNP [dm3] 3L_15748727_SNP [dm6]	T	C	6.694e^-5	0.515	DOWNSTREAM CR45240 INTERGENIC
3R	9817323	3R_9817323_SNP [dm3] 3R_13991601_SNP [dm6]	T	A	6.713e^-5	0.515	INTRON rdx
3R	12971257	3R_12971257_SNP [dm3] 3R_17145535_SNP [dm6]	A	C	6.765e^-5	0.515	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3R	12971260	3R_12971260_DEL [dm3] 3R_17145538_DEL [dm6]	AGGTAAGCATCCTA...	G	6.765e^-5	0.515	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3R	27136518	3R_27136518_SNP [dm3] 3R_31310796_SNP [dm6]	T	A	6.789e^-5	0.515	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	12223155	3L_12223155_SNP [dm3] 3L_12230055_SNP [dm6]	A	T	6.813e^-5	0.515	INTRON app
2L	8447265	2L_8447265_SNP [dm3] 2L_8447265_SNP [dm6]	A	G	6.831e^-5	0.515	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	5216125	3L_5216125_SNP [dm3] 3L_5223025_SNP [dm6]	C	T	6.848e^-5	0.515	INTRON shep
3R	12970264	3R_12970264_SNP [dm3] 3R_17144542_SNP [dm6]	A	G	6.863e^-5	0.515	UTR_3_PRIME m-cup DOWNSTREAM m-cup
3R	27132176	3R_27132176_SNP [dm3] 3R_31306454_SNP [dm6]	A	T	6.892e^-5	0.515	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	17887201	2L_17887201_SNP [dm3] 2L_17887201_SNP [dm6]	T	A	6.905e^-5	0.515	INTERGENIC
X	8628993	X_8628993_SNP [dm3] X_8734960_SNP [dm6]	G	A	6.921e^-5	0.515	INTERGENIC
2R	5046394	2R_5046394_SNP [dm3] 2R_9158889_SNP [dm6]	T	A	6.946e^-5	0.515	SPLICE_SITE_REGION CG8008 INTRON CG8008
X	7993142	X_7993142_SNP [dm3] X_8099109_SNP [dm6]	T	A	6.964e^-5	0.515	INTRON CG2258	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6001663	3L_6001663_SNP [dm3] 3L_6008563_SNP [dm6]	C	A	6.997e^-5	0.515	DOWNSTREAM alphaKap4 INTRON PVRAP
3L	13317500	3L_13317500_SNP [dm3] 3L_13324400_SNP [dm6]	A	C	7.022e^-5	0.515	EXON CR44558
X	4093930	X_4093930_SNP [dm3] X_4199897_SNP [dm6]	T	C	7.087e^-5	0.515	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	13682419	3R_13682419_SNP [dm3] 3R_17856697_SNP [dm6]	T	C	7.142e^-5	0.515	INTRON tinc
3R	13682437	3R_13682437_SNP [dm3] 3R_17856715_SNP [dm6]	G	C	7.142e^-5	0.515	INTRON tinc
3R	27125747	3R_27125747_SNP [dm3] 3R_31300025_SNP [dm6]	C	T	7.142e^-5	0.515	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16890200	X_16890200_SNP [dm3] X_16996167_SNP [dm6]	A	T	7.142e^-5	0.515	INTRON CG45002
3L	7129114	3L_7129114_SNP [dm3] 3L_7136014_SNP [dm6]	G	A	7.176e^-5	0.515	INTRON melt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12237903	3R_12237903_SNP [dm3] 3R_16412181_SNP [dm6]	G	T	7.196e^-5	0.515	INTERGENIC
X	14859243	X_14859243_SNP [dm3] X_14965210_SNP [dm6]	G	A	7.217e^-5	0.515	INTRON eag
3L	7129112	3L_7129112_INS [dm3] 3L_7136012_INS [dm6]	G	GAAGAAGG	7.237e^-5	0.515	INTRON melt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1698167	3R_1698167_SNP [dm3] 3R_5872445_SNP [dm6]	C	T	7.250e^-5	0.515	INTRON CG34113
3L	7129119	3L_7129119_SNP [dm3] 3L_7136019_SNP [dm6]	T	G	7.258e^-5	0.515	INTRON melt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13095626	X_13095626_SNP [dm3] X_13201593_SNP [dm6]	A	C	7.278e^-5	0.515	NON_SYNONYMOUS_CODING CG44437 INTRON sno	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	21063578	X_21063578_SNP [dm3] X_21192551_SNP [dm6]	G	A	7.381e^-5	0.52	UPSTREAM CG14579 INTERGENIC
2L	19841437	2L_19841437_SNP [dm3] 2L_19841437_SNP [dm6]	G	A	7.432e^-5	0.522	INTRON sick
3L	14489354	3L_14489354_SNP [dm3] 3L_14496254_SNP [dm6]	T	A	7.479e^-5	0.522	INTRON bbg	TF binding site mE1_TFBS_cad
2L	17302476	2L_17302476_SNP [dm3] 2L_17302476_SNP [dm6]	A	C	7.519e^-5	0.522	INTERGENIC	TF binding site mE1_TFBS_sbb
3R	4349394	3R_4349394_SNP [dm3] 3R_8523672_SNP [dm6]	G	A	7.538e^-5	0.522	UPSTREAM CG31259 DOWNSTREAM CG31454 INTERGENIC
3R	17455708	3R_17455708_SNP [dm3] 3R_21629986_SNP [dm6]	G	T	7.566e^-5	0.522	INTRON E2f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	17952250	X_17952250_SNP [dm3] X_18058217_SNP [dm6]	G	A	7.567e^-5	0.522	INTRON Sh
3L	8251103	3L_8251103_SNP [dm3] 3L_8258003_SNP [dm6]	A	T	7.615e^-5	0.523	INTRON Dscam4
X	17951830	X_17951830_SNP [dm3] X_18057797_SNP [dm6]	A	C	7.645e^-5	0.523	INTRON Sh
2R	17892192	2R_17892192_SNP [dm3] 2R_22004687_SNP [dm6]	A	G	7.706e^-5	0.524	INTRON CG34370
3L	14489373	3L_14489373_SNP [dm3] 3L_14496273_SNP [dm6]	C	T	7.716e^-5	0.524	INTRON bbg	TF binding site mE1_TFBS_cad
3R	23141751	3R_23141751_SNP [dm3] 3R_27316029_SNP [dm6]	C	A	7.738e^-5	0.524	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	9783418	3L_9783418_SNP [dm3] 3L_9790318_SNP [dm6]	G	A	7.796e^-5	0.524	DOWNSTREAM Zasp67 INTRON Zasp67	TF binding site mE1_TFBS_HSA
2L	17282955	2L_17282955_SNP [dm3] 2L_17282955_SNP [dm6]	C	A	7.808e^-5	0.524	INTERGENIC
2L	20073290	2L_20073290_SNP [dm3] 2L_20073290_SNP [dm6]	C	T	7.821e^-5	0.524	UTR_3_PRIME bwa DOWNSTREAM pr INTRON bwa
2R	14018530	2R_14018530_SNP [dm3] 2R_18131025_SNP [dm6]	T	C	7.916e^-5	0.526	SYNONYMOUS_CODING Hsf DOWNSTREAM Dip3
3L	17193388	3L_17193388_SNP [dm3] 3L_17200288_SNP [dm6]	T	A	7.964e^-5	0.526	INTRON Rbp6
3L	5148724	3L_5148724_SNP [dm3] 3L_5155624_SNP [dm6]	A	G	8.018e^-5	0.526	DOWNSTREAM Srp54k & 1 other INTERGENIC
2L	14517079	2L_14517079_SNP [dm3] 2L_14517079_SNP [dm6]	G	A	8.060e^-5	0.526	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4159131	3L_4159131_DEL [dm3] 3L_4159131_DEL [dm6]	GG	G	8.069e^-5	0.526	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3R	26042450	3R_26042450_SNP [dm3] 3R_30216728_SNP [dm6]	T	A	8.117e^-5	0.526	INTRON CecC
2L	16118332	2L_16118332_SNP [dm3] 2L_16118332_SNP [dm6]	A	T	8.124e^-5	0.526	INTERGENIC
3R	21341350	3R_21341350_SNP [dm3] 3R_25515628_SNP [dm6]	G	T	8.160e^-5	0.526	UPSTREAM msi INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11927532	3L_11927532_SNP [dm3] 3L_11934432_SNP [dm6]	G	T	8.163e^-5	0.526	SYNONYMOUS_CODING byn INTRON CG44837	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9483255	3L_9483255_SNP [dm3] 3L_9490155_SNP [dm6]	T	C	8.179e^-5	0.526	UTR_3_PRIME CG32037 UPSTREAM CG32036	TF binding site mE1_TFBS_cad
3R	13683156	3R_13683156_SNP [dm3] 3R_17857434_SNP [dm6]	G	A	8.191e^-5	0.526	INTRON tinc
2L	6499760	2L_6499760_SNP [dm3] 2L_6499760_SNP [dm6]	G	A	8.193e^-5	0.526	SYNONYMOUS_CODING CG31637	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	8608926	2L_8608926_SNP [dm3] 2L_8608926_SNP [dm6]	G	C	8.272e^-5	0.529	INTRON Sema-1a
3L	5694802	3L_5694802_SNP [dm3] 3L_5701702_SNP [dm6]	T	G	8.305e^-5	0.529	INTRON sif
X	17952248	X_17952248_SNP [dm3] X_18058215_SNP [dm6]	C	A	8.420e^-5	0.529	INTRON Sh
3R	4934321	3R_4934321_SNP [dm3] 3R_9108599_SNP [dm6]	G	A	8.441e^-5	0.529	INTRON pum
3R	4340353	3R_4340353_DEL [dm3] 3R_8514631_DEL [dm6]	GGGTTTTGGGCATAG...	A	8.456e^-5	0.529	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	702432	2L_702432_SNP [dm3] 2L_702432_SNP [dm6]	C	A	8.459e^-5	0.529	INTRON ds	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	2645600	3L_2645600_SNP [dm3] 3L_2645600_SNP [dm6]	A	T	8.481e^-5	0.529	INTRON CG1143	TF binding site mE1_TFBS_cad
3R	13600041	3R_13600041_SNP [dm3] 3R_17774319_SNP [dm6]	C	T	8.524e^-5	0.529	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3L	14248500	3L_14248500_SNP [dm3] 3L_14255400_SNP [dm6]	G	T	8.594e^-5	0.529	INTERGENIC
3R	27129490	3R_27129490_SNP [dm3] 3R_31303768_SNP [dm6]	A	G	8.601e^-5	0.529	SYNONYMOUS_CODING CG11340	TF binding site mE1_TFBS_sens
2L	9104792	2L_9104792_SNP [dm3] 2L_9104792_SNP [dm6]	A	G	8.608e^-5	0.529	INTERGENIC
2L	8205019	2L_8205019_SNP [dm3] 2L_8205019_SNP [dm6]	G	C	8.611e^-5	0.529	UTR_5_PRIME SLC5A11 DOWNSTREAM CR44120 & 1 other EXON CR44119	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	6710275	3L_6710275_SNP [dm3] 3L_6717175_SNP [dm6]	G	A	8.613e^-5	0.529	INTRON ple	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	24486158	3R_24486158_SNP [dm3] 3R_28660436_SNP [dm6]	C	T	8.715e^-5	0.534	INTERGENIC
X	4094154	X_4094154_SNP [dm3] X_4200121_SNP [dm6]	C	T	8.795e^-5	0.535	INTRON Fas2	TF binding site BDTNP1_TFBS_dl
2R	15903063	2R_15903063_SNP [dm3] 2R_20015558_SNP [dm6]	A	C	8.816e^-5	0.535	DOWNSTREAM CR44629 & 1 other INTERGENIC
3R	5448600	3R_5448600_DEL [dm3] 3R_9622878_DEL [dm6]	ATACGCATGA	A	8.845e^-5	0.535	UPSTREAM CG8312 INTRON CG8312	TF binding site mE1_TFBS_cad
3L	14555445	3L_14555445_SNP [dm3] 3L_14562345_SNP [dm6]	A	T	8.874e^-5	0.535	INTRON CG34039	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
3L	6290110	3L_6290110_SNP [dm3] 3L_6297010_SNP [dm6]	C	G	8.910e^-5	0.535	INTERGENIC
3R	13682812	3R_13682812_SNP [dm3] 3R_17857090_SNP [dm6]	G	C	8.910e^-5	0.535	INTRON tinc
3L	9483258	3L_9483258_INS [dm3] 3L_9490158_INS [dm6]	T	TTATAGCGTT	8.957e^-5	0.536	UTR_3_PRIME CG32037 UPSTREAM CG32036	TF binding site mE1_TFBS_cad
2L	16759323	2L_16759323_SNP [dm3] 2L_16759323_SNP [dm6]	C	T	9.017e^-5	0.537	INTRON ppk17
3L	13554079	3L_13554079_SNP [dm3] 3L_13560979_SNP [dm6]	G	A	9.024e^-5	0.537	INTRON bru-3
3L	7247861	3L_7247861_SNP [dm3] 3L_7254761_SNP [dm6]	G	A	9.051e^-5	0.537	INTRON CG14830
3R	18895731	3R_18895731_SNP [dm3] 3R_23070009_SNP [dm6]	A	G	9.083e^-5	0.537	DOWNSTREAM CG13830 INTERGENIC
2R	12282277	2R_12282277_SNP [dm3] 2R_16394772_SNP [dm6]	C	T	9.111e^-5	0.537	INTRON Sema-2b
2L	2415341	2L_2415341_SNP [dm3] 2L_2415341_SNP [dm6]	T	C	9.186e^-5	0.538	UPSTREAM CG18641 DOWNSTREAM CG31948 INTERGENIC
2L	5867610	2L_5867610_SNP [dm3] 2L_5867610_SNP [dm6]	T	C	9.198e^-5	0.538	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21366212	3R_21366212_SNP [dm3] 3R_25540490_SNP [dm6]	A	G	9.220e^-5	0.538	INTRON msi
3R	22153955	3R_22153955_SNP [dm3] 3R_26328233_SNP [dm6]	A	T	9.256e^-5	0.539	INTRON CG33970
2L	2435436	2L_2435436_MNP [dm3] 2L_2435436_MNP [dm6]	TAAA	CTTC	9.282e^-5	0.539	INTRON dpp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	9515096	3L_9515096_SNP [dm3] 3L_9521996_SNP [dm6]	A	G	9.325e^-5	0.539	INTRON CG33700
3L	3873958	3L_3873958_SNP [dm3] 3L_3873958_SNP [dm6]	T	A	9.366e^-5	0.539	INTERGENIC	TF binding site mE1_TFBS_cad
3R	991978	3R_991978_SNP [dm3] 3R_5166256_SNP [dm6]	T	C	9.384e^-5	0.539	SYNONYMOUS_CODING dpr16	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1733205	3L_1733205_SNP [dm3] 3L_1733205_SNP [dm6]	C	T	9.397e^-5	0.539	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17327630	2L_17327630_SNP [dm3] 2L_17327630_SNP [dm6]	C	G	9.458e^-5	0.539	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20733104	X_20733104_SNP [dm3] X_20862077_SNP [dm6]	A	G	9.516e^-5	0.539	INTRON shakB
3L	1732983	3L_1732983_SNP [dm3] 3L_1732983_SNP [dm6]	A	G	9.543e^-5	0.539	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25570656	3R_25570656_SNP [dm3] 3R_29744934_SNP [dm6]	G	A	9.570e^-5	0.539	SYNONYMOUS_CODING CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2646481	3L_2646481_SNP [dm3] 3L_2646481_SNP [dm6]	T	C	9.599e^-5	0.539	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad
2L	2767296	2L_2767296_SNP [dm3] 2L_2767296_SNP [dm6]	A	C	9.606e^-5	0.539	UTR_3_PRIME Taf10b UPSTREAM Taf10 DOWNSTREAM aph-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	2021720	2L_2021720_SNP [dm3] 2L_2021720_SNP [dm6]	T	A	9.615e^-5	0.539	INTRON CG4238
X	14325040	X_14325040_SNP [dm3] X_14431007_SNP [dm6]	C	T	9.647e^-5	0.539	INTRON dpr8
2L	15760747	2L_15760747_SNP [dm3] 2L_15760747_SNP [dm6]	T	C	9.722e^-5	0.539	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
3L	16724814	3L_16724814_SNP [dm3] 3L_16731714_SNP [dm6]	A	G	9.763e^-5	0.539	UPSTREAM Dbp73D INTERGENIC	TF binding site mE1_TFBS_HSA
2L	8448676	2L_8448676_SNP [dm3] 2L_8448676_SNP [dm6]	G	T	9.822e^-5	0.539	SYNONYMOUS_CODING U26
3R	14771213	3R_14771213_SNP [dm3] 3R_18945491_SNP [dm6]	A	C	9.860e^-5	0.539	INTRON CG42613
3R	4358814	3R_4358814_SNP [dm3] 3R_8533092_SNP [dm6]	G	C	9.867e^-5	0.539	INTERGENIC
2L	2435535	2L_2435535_SNP [dm3] 2L_2435535_SNP [dm6]	G	T	9.947e^-5	0.539	INTRON dpp	TF binding site mE1_TFBS_cnc
X	14679288	X_14679288_SNP [dm3] X_14785255_SNP [dm6]	T	C	9.963e^-5	0.539	UTR_3_PRIME Ag5r
3R	10272587	3R_10272587_SNP [dm3] 3R_14446865_SNP [dm6]	C	T	9.979e^-5	0.539	INTRON cv-c
3R	20409731	3R_20409731_SNP [dm3] 3R_24584009_SNP [dm6]	G	T	9.988e^-5	0.539	NON_SYNONYMOUS_CODING CG13625	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12937100	X_12937100_SNP [dm3] X_13043067_SNP [dm6]	G	A	9.997e^-5	0.539	INTRON rad
2R	15895215	2R_15895215_SNP [dm3] 2R_20007710_SNP [dm6]	T	C	1.002e^-4	0.539	DOWNSTREAM CR44628 INTERGENIC	TF binding site mE1_TFBS_Trl
X	5897088	X_5897088_SNP [dm3] X_6003055_SNP [dm6]	A	C	1.003e^-4	0.539	INTRON CR44498
3L	12023901	3L_12023901_SNP [dm3] 3L_12030801_SNP [dm6]	C	T	1.004e^-4	0.539	INTRON rols	TF binding site mE1_TFBS_cad
3R	21344585	3R_21344585_SNP [dm3] 3R_25518863_SNP [dm6]	G	T	1.005e^-4	0.539	INTRON msi	TF binding site mE1_TFBS_Trl
2L	2923805	2L_2923805_SNP [dm3] 2L_2923805_SNP [dm6]	G	A	1.006e^-4	0.539	INTRON lilli
2L	16102044	2L_16102044_DEL [dm3] 2L_16102044_DEL [dm6]	AG	A	1.013e^-4	0.541	INTERGENIC
3R	19501640	3R_19501640_SNP [dm3] 3R_23675918_SNP [dm6]	C	G	1.021e^-4	0.542	INTERGENIC
2L	4222233	2L_4222233_SNP [dm3] 2L_4222233_SNP [dm6]	T	A	1.021e^-4	0.542	UPSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	13239973	3L_13239973_SNP [dm3] 3L_13246873_SNP [dm6]	T	A	1.028e^-4	0.542	UTR_3_PRIME CG32119 INTRON caps
2L	10085537	2L_10085537_DEL [dm3] 2L_10085537_DEL [dm6]	CC	C	1.031e^-4	0.542	INTRON CG44153
X	7619193	X_7619193_SNP [dm3] X_7725160_SNP [dm6]	C	T	1.034e^-4	0.542	SYNONYMOUS_CODING Hira DOWNSTREAM NELF-B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4242100	3L_4242100_SNP [dm3] 3L_4242100_SNP [dm6]	T	C	1.034e^-4	0.542	UPSTREAM pav INTRON CG14997	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9817339	3R_9817339_SNP [dm3] 3R_13991617_SNP [dm6]	A	T	1.043e^-4	0.542	INTRON rdx
X	20215420	X_20215420_SNP [dm3] X_20344393_SNP [dm6]	A	G	1.043e^-4	0.542	INTERGENIC
3L	9353049	3L_9353049_SNP [dm3] 3L_9359949_SNP [dm6]	C	A	1.045e^-4	0.542	UTR_3_PRIME CG32039 UPSTREAM CG34455 DOWNSTREAM CG32039	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
2R	18475324	2R_18475324_DEL [dm3] 2R_22587819_DEL [dm6]	GA	G	1.047e^-4	0.542	INTRON dnr1
3R	13926748	3R_13926748_SNP [dm3] 3R_18101026_SNP [dm6]	G	T	1.050e^-4	0.542	INTRON sr
X	10569471	X_10569471_SNP [dm3] X_10675438_SNP [dm6]	A	C	1.053e^-4	0.542	INTRON X11Lbeta
2L	19697001	2L_19697001_SNP [dm3] 2L_19697001_SNP [dm6]	C	T	1.054e^-4	0.542	INTRON Lar	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	4367387	3R_4367387_SNP [dm3] 3R_8541665_SNP [dm6]	A	G	1.056e^-4	0.542	INTERGENIC
2L	4222231	2L_4222231_SNP [dm3] 2L_4222231_SNP [dm6]	A	T	1.075e^-4	0.543	UPSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
2R	6277618	2R_6277618_MNP [dm3] 2R_10390113_MNP [dm6]	AATA	CTCG	1.094e^-4	0.543	INTRON CG42732
X	11781645	X_11781645_SNP [dm3] X_11887612_SNP [dm6]	T	A	1.094e^-4	0.543	UPSTREAM CG10353 & 1 other INTRON SelG	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	8447795	2L_8447795_SNP [dm3] 2L_8447795_SNP [dm6]	C	T	1.095e^-4	0.543	SYNONYMOUS_CODING U26 UTR_3_PRIME U26
2L	21775574	2L_21775574_INS [dm3] 2L_21775574_INS [dm6]	A	ATC	1.100e^-4	0.543	INTRON CG31612	TF binding site mE1_TFBS_HSA transposable element FlyBase
3L	440093	3L_440093_SNP [dm3] 3L_440093_SNP [dm6]	G	T	1.101e^-4	0.543	INTRON klar	TF binding site mE1_TFBS_sens
2R	16340634	2R_16340634_SNP [dm3] 2R_20453129_SNP [dm6]	A	G	1.105e^-4	0.543	INTRON CG12484
2L	13341680	2L_13341680_DEL [dm3] 2L_13341680_DEL [dm6]	TAATGCAT	T	1.109e^-4	0.543	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	19896738	2L_19896738_SNP [dm3] 2L_19896738_SNP [dm6]	T	A	1.112e^-4	0.543	INTRON sick
3R	27136571	3R_27136571_SNP [dm3] 3R_31310849_SNP [dm6]	A	G	1.125e^-4	0.543	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	13600203	3R_13600203_SNP [dm3] 3R_17774481_SNP [dm6]	C	T	1.126e^-4	0.543	UTR_5_PRIME CG43102 INTRON CG43102
3R	13600449	3R_13600449_SNP [dm3] 3R_17774727_SNP [dm6]	C	T	1.126e^-4	0.543	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl
3L	1734469	3L_1734469_SNP [dm3] 3L_1734469_SNP [dm6]	G	A	1.127e^-4	0.543	INTRON Oseg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6757118	3L_6757118_INS [dm3] 3L_6764018_INS [dm6]	T	TGTAT	1.128e^-4	0.543	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
3R	4934322	3R_4934322_SNP [dm3] 3R_9108600_SNP [dm6]	C	T	1.129e^-4	0.543	INTRON pum
X	5661124	X_5661124_SNP [dm3] X_5767091_SNP [dm6]	G	A	1.129e^-4	0.543	SYNONYMOUS_CODING CG3097 INTRON CG42699	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8729759	X_8729759_SNP [dm3] X_8835726_SNP [dm6]	C	T	1.130e^-4	0.543	EXON CR45537
2L	20300223	2L_20300223_SNP [dm3] 2L_20300223_SNP [dm6]	G	T	1.133e^-4	0.543	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	14192475	2R_14192475_SNP [dm3] 2R_18304970_SNP [dm6]	T	G	1.134e^-4	0.543	UPSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	8002762	2L_8002762_SNP [dm3] 2L_8002762_SNP [dm6]	G	A	1.137e^-4	0.543	INTRON Wwox
X	13998016	X_13998016_SNP [dm3] X_14103983_SNP [dm6]	A	T	1.139e^-4	0.543	UPSTREAM tRNA:S4:12Ee & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21366209	3R_21366209_SNP [dm3] 3R_25540487_SNP [dm6]	T	G	1.139e^-4	0.543	INTRON msi
3R	21366240	3R_21366240_SNP [dm3] 3R_25540518_SNP [dm6]	T	G	1.139e^-4	0.543	INTRON msi
3R	21366257	3R_21366257_SNP [dm3] 3R_25540535_SNP [dm6]	T	C	1.139e^-4	0.543	INTRON msi
3R	21366259	3R_21366259_SNP [dm3] 3R_25540537_SNP [dm6]	A	G	1.139e^-4	0.543	INTRON msi
3R	21366264	3R_21366264_INS [dm3] 3R_25540542_INS [dm6]	T	TTACC	1.139e^-4	0.543	INTRON msi
3R	21366355	3R_21366355_SNP [dm3] 3R_25540633_SNP [dm6]	C	A	1.139e^-4	0.543	INTRON msi
3R	4364479	3R_4364479_SNP [dm3] 3R_8538757_SNP [dm6]	G	A	1.141e^-4	0.543	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	19940949	2L_19940949_SNP [dm3] 2L_19940949_SNP [dm6]	A	T	1.141e^-4	0.543	INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12663420	X_12663420_SNP [dm3] X_12769387_SNP [dm6]	T	C	1.146e^-4	0.543	INTRON CG3812	TF binding site BDTNP1_TFBS_twi
2L	16161843	2L_16161843_SNP [dm3] 2L_16161843_SNP [dm6]	A	C	1.146e^-4	0.543	INTERGENIC
2L	1986122	2L_1986122_SNP [dm3] 2L_1986122_SNP [dm6]	A	T	1.153e^-4	0.544	INTRON Got2
3L	2647596	3L_2647596_SNP [dm3] 3L_2647596_SNP [dm6]	C	A	1.156e^-4	0.545	UPSTREAM CG1246 DOWNSTREAM CG1143 INTERGENIC
2R	19553594	2R_19553594_SNP [dm3] 2R_23666071_SNP [dm6]	C	T	1.161e^-4	0.546	INTRON Pde8	TF binding site mE1_TFBS_Trl
3L	3872313	3L_3872313_SNP [dm3] 3L_3872313_SNP [dm6]	A	G	1.169e^-4	0.547	INTERGENIC
X	12318134	X_12318134_SNP [dm3] X_12424101_SNP [dm6]	T	A	1.175e^-4	0.547	INTERGENIC
X	5897071	X_5897071_SNP [dm3] X_6003038_SNP [dm6]	T	A	1.178e^-4	0.547	INTRON CR44498
X	12772793	X_12772793_SNP [dm3] X_12878760_SNP [dm6]	T	A	1.180e^-4	0.547	INTRON Pde9
2L	2519691	2L_2519691_SNP [dm3] 2L_2519691_SNP [dm6]	T	C	1.180e^-4	0.547	INTERGENIC
3L	1109916	3L_1109916_SNP [dm3] 3L_1109916_SNP [dm6]	C	T	1.183e^-4	0.547	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	3436512	2L_3436512_SNP [dm3] 2L_3436512_SNP [dm6]	G	C	1.184e^-4	0.547	INTERGENIC
2R	13533166	2R_13533166_SNP [dm3] 2R_17645661_SNP [dm6]	C	G	1.195e^-4	0.549	INTERGENIC
3R	15077482	3R_15077482_SNP [dm3] 3R_19251760_SNP [dm6]	G	A	1.196e^-4	0.549	INTERGENIC
X	13265005	X_13265005_SNP [dm3] X_13370972_SNP [dm6]	G	A	1.198e^-4	0.549	UPSTREAM CG1640 DOWNSTREAM dmrt11E INTRON CG1640	TF binding site BDTNP1_TFBS_dl
2L	17282977	2L_17282977_SNP [dm3] 2L_17282977_SNP [dm6]	A	T	1.202e^-4	0.549	INTERGENIC
3R	4345038	3R_4345038_SNP [dm3] 3R_8519316_SNP [dm6]	G	T	1.204e^-4	0.549	INTRON CG11737
2L	17282857	2L_17282857_SNP [dm3] 2L_17282857_SNP [dm6]	G	A	1.206e^-4	0.549	INTERGENIC
3R	5463187	3R_5463187_SNP [dm3] 3R_9637465_SNP [dm6]	T	G	1.210e^-4	0.549	UTR_5_PRIME Scm UPSTREAM Dh44	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
2R	13231183	2R_13231183_SNP [dm3] 2R_17343678_SNP [dm6]	T	A	1.216e^-4	0.55	INTRON mbl
3L	15001016	3L_15001016_SNP [dm3] 3L_15007916_SNP [dm6]	T	C	1.225e^-4	0.55	INTRON Reck
3R	14771192	3R_14771192_SNP [dm3] 3R_18945470_SNP [dm6]	A	C	1.227e^-4	0.55	INTRON CG42613
X	14804057	X_14804057_SNP [dm3] X_14910024_SNP [dm6]	T	A	1.233e^-4	0.55	UTR_3_PRIME CG14406 UPSTREAM CG9509 DOWNSTREAM CG14406 INTRON Flo2	regulatory region REDfly_CRMs
3R	5076316	3R_5076316_SNP [dm3] 3R_9250594_SNP [dm6]	C	T	1.235e^-4	0.55	INTRON CG8420
3L	20187557	3L_20187557_DEL [dm3] 3L_20194457_DEL [dm6]	CAC	C	1.236e^-4	0.55	INTRON CG42674
2L	19894377	2L_19894377_SNP [dm3] 2L_19894377_SNP [dm6]	A	G	1.243e^-4	0.55	INTRON sick
2L	8448106	2L_8448106_SNP [dm3] 2L_8448106_SNP [dm6]	G	A	1.243e^-4	0.55	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	702629	2L_702629_SNP [dm3] 2L_702629_SNP [dm6]	C	A	1.251e^-4	0.55	INTRON ds	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	6016574	2R_6016574_SNP [dm3] 2R_10129069_SNP [dm6]	G	A	1.255e^-4	0.55	INTRON gem	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	20561531	X_20561531_SNP [dm3] X_20690504_SNP [dm6]	A	T	1.260e^-4	0.55	UPSTREAM run EXON CR45610	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	20227751	X_20227751_INS [dm3] X_20356724_INS [dm6]	C	CGC	1.260e^-4	0.55	INTERGENIC
3L	1731239	3L_1731239_INS [dm3] 3L_1731239_INS [dm6]	T	TGT	1.262e^-4	0.55	UTR_3_PRIME Oseg4 UPSTREAM drpr DOWNSTREAM Oseg4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	702597	2L_702597_INS [dm3] 2L_702597_INS [dm6]	C	CACCTAAGCACAAATATGC...	1.264e^-4	0.55	INTRON ds	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	9890126	2L_9890126_SNP [dm3] 2L_9890126_SNP [dm6]	A	T	1.264e^-4	0.55	UTR_3_PRIME CG34183 UPSTREAM CG4537 DOWNSTREAM FKBP59
3R	10437015	3R_10437015_SNP [dm3] 3R_14611293_SNP [dm6]	A	T	1.266e^-4	0.55	INTRON CG14853
3R	14771210	3R_14771210_SNP [dm3] 3R_18945488_SNP [dm6]	G	A	1.266e^-4	0.55	INTRON CG42613
3L	13339531	3L_13339531_SNP [dm3] 3L_13346431_SNP [dm6]	G	T	1.267e^-4	0.55	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14925605	3L_14925605_SNP [dm3] 3L_14932505_SNP [dm6]	T	G	1.268e^-4	0.55	INTRON DCX-EMAP
2L	14150313	2L_14150313_SNP [dm3] 2L_14150313_SNP [dm6]	T	C	1.274e^-4	0.551	INTRON CG17341
3R	10213841	3R_10213841_SNP [dm3] 3R_14388119_SNP [dm6]	A	T	1.276e^-4	0.551	INTERGENIC
3L	837662	3L_837662_SNP [dm3] 3L_837662_SNP [dm6]	A	C	1.287e^-4	0.551	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	17282974	2L_17282974_SNP [dm3] 2L_17282974_SNP [dm6]	T	G	1.288e^-4	0.551	INTERGENIC
3L	13557427	3L_13557427_INS [dm3] 3L_13564327_INS [dm6]	G	TA	1.290e^-4	0.551	INTRON bru-3
3L	13557430	3L_13557430_DEL [dm3] 3L_13564330_DEL [dm6]	GTTT	G	1.290e^-4	0.551	INTRON bru-3
2L	702097	2L_702097_SNP [dm3] 2L_702097_SNP [dm6]	T	C	1.291e^-4	0.551	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	20300234	2L_20300234_SNP [dm3] 2L_20300234_SNP [dm6]	A	G	1.302e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	22238973	3R_22238973_SNP [dm3] 3R_26413251_SNP [dm6]	G	A	1.305e^-4	0.555	UPSTREAM CG5432 INTERGENIC
3L	13924066	3L_13924066_SNP [dm3] 3L_13930966_SNP [dm6]	G	A	1.313e^-4	0.557	NON_SYNONYMOUS_CODING Gl	TF binding site mE1_TFBS_cad
3L	20902444	3L_20902444_SNP [dm3] 3L_20909344_SNP [dm6]	A	T	1.318e^-4	0.557	INTERGENIC
2L	2435442	2L_2435442_SNP [dm3] 2L_2435442_SNP [dm6]	G	A	1.321e^-4	0.557	INTRON dpp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	16344120	X_16344120_SNP [dm3] X_16450087_SNP [dm6]	G	A	1.322e^-4	0.557	SYNONYMOUS_CODING Rbp2	TF binding site BDTNP1_TFBS_dl
2L	9104481	2L_9104481_SNP [dm3] 2L_9104481_SNP [dm6]	T	A	1.326e^-4	0.557	INTERGENIC
2L	3114476	2L_3114476_SNP [dm3] 2L_3114476_SNP [dm6]	C	G	1.329e^-4	0.557	INTRON toc
2L	19890129	2L_19890129_SNP [dm3] 2L_19890129_SNP [dm6]	G	A	1.331e^-4	0.557	DOWNSTREAM CG10481 INTRON sick
3R	6752684	3R_6752684_SNP [dm3] 3R_10926962_SNP [dm6]	T	C	1.338e^-4	0.559	INTERGENIC
3L	13317501	3L_13317501_SNP [dm3] 3L_13324401_SNP [dm6]	C	T	1.345e^-4	0.559	EXON CR44558
3R	13599046	3R_13599046_SNP [dm3] 3R_17773324_SNP [dm6]	G	A	1.360e^-4	0.559	SYNONYMOUS_CODING CG43102
X	14305173	X_14305173_SNP [dm3] X_14411140_SNP [dm6]	C	A	1.364e^-4	0.559	INTRON dpr8
3R	5709131	3R_5709131_SNP [dm3] 3R_9883409_SNP [dm6]	C	G	1.364e^-4	0.559	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4341192	3R_4341192_SNP [dm3] 3R_8515470_SNP [dm6]	G	A	1.375e^-4	0.559	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3910709	3L_3910709_SNP [dm3] 3L_3910709_SNP [dm6]	G	T	1.377e^-4	0.559	UTR_3_PRIME Eip63F-1 UPSTREAM mge DOWNSTREAM Eip63F-1
3L	17332822	3L_17332822_SNP [dm3] 3L_17339722_SNP [dm6]	A	T	1.381e^-4	0.559	UPSTREAM CG6479 DOWNSTREAM tRNA:CR32173 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13042201	2R_13042201_SNP [dm3] 2R_17154696_SNP [dm6]	T	C	1.386e^-4	0.559	UTR_5_PRIME CG17290 UPSTREAM CG17290
3L	12223151	3L_12223151_SNP [dm3] 3L_12230051_SNP [dm6]	T	A	1.387e^-4	0.559	INTRON app
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	1.388e^-4	0.559	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17791346	2L_17791346_SNP [dm3] 2L_17791346_SNP [dm6]	T	C	1.391e^-4	0.559	INTRON CadN2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17792863	2L_17792863_SNP [dm3] 2L_17792863_SNP [dm6]	C	A	1.391e^-4	0.559	INTRON CadN2 EXON CR43419	TF binding site mE1_TFBS_cad
2R	20658290	2R_20658290_DEL [dm3] 2R_24770767_DEL [dm6]	TG	T	1.392e^-4	0.559	UTR_3_PRIME Eps-15 INTRON Eps-15	TF binding site BDTNP1_TFBS_prd
3R	26478927	3R_26478927_SNP [dm3] 3R_30653205_SNP [dm6]	A	C	1.393e^-4	0.559	INTERGENIC
2L	5867584	2L_5867584_SNP [dm3] 2L_5867584_SNP [dm6]	C	T	1.397e^-4	0.559	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15292548	3R_15292548_SNP [dm3] 3R_19466826_SNP [dm6]	C	G	1.397e^-4	0.559	INTRON Dys
3R	4362825	3R_4362825_SNP [dm3] 3R_8537103_SNP [dm6]	T	A	1.400e^-4	0.559	INTERGENIC
3L	837721	3L_837721_SNP [dm3] 3L_837721_SNP [dm6]	C	G	1.401e^-4	0.559	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	17283162	2L_17283162_SNP [dm3] 2L_17283162_SNP [dm6]	G	A	1.402e^-4	0.559	INTERGENIC
3L	18720550	3L_18720550_SNP [dm3] 3L_18727450_SNP [dm6]	A	G	1.405e^-4	0.559	INTERGENIC
2L	17302634	2L_17302634_SNP [dm3] 2L_17302634_SNP [dm6]	A	G	1.405e^-4	0.559	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	8222268	X_8222268_SNP [dm3] X_8328235_SNP [dm6]	A	T	1.405e^-4	0.559	INTRON nAChRalpha3
2L	17333728	2L_17333728_SNP [dm3] 2L_17333728_SNP [dm6]	G	T	1.418e^-4	0.56	INTERGENIC
2L	19894415	2L_19894415_SNP [dm3] 2L_19894415_SNP [dm6]	C	T	1.423e^-4	0.56	INTRON sick	silencer mE1_HDAC_PRE
3L	13216403	3L_13216403_SNP [dm3] 3L_13223303_SNP [dm6]	C	T	1.428e^-4	0.56	INTERGENIC
3R	2868309	3R_2868309_SNP [dm3] 3R_7042587_SNP [dm6]	G	A	1.437e^-4	0.56	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	1735712	3L_1735712_SNP [dm3] 3L_1735712_SNP [dm6]	G	A	1.438e^-4	0.56	UTR_5_PRIME Oseg4 DOWNSTREAM CG18173	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad
3R	25128569	3R_25128569_DEL [dm3] 3R_29302847_DEL [dm6]	GG	G	1.444e^-4	0.56	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4222235	2L_4222235_SNP [dm3] 2L_4222235_SNP [dm6]	C	T	1.446e^-4	0.56	UPSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	512739	2L_512739_SNP [dm3] 2L_512739_SNP [dm6]	T	G	1.451e^-4	0.56	INTRON ush	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
3L	1732791	3L_1732791_SNP [dm3] 3L_1732791_SNP [dm6]	A	G	1.452e^-4	0.56	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20262270	X_20262270_INS [dm3] X_20391243_INS [dm6]	A	ATCAATAATAATTCAA...	1.453e^-4	0.56	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6451166	X_6451166_SNP [dm3] X_6557133_SNP [dm6]	C	T	1.454e^-4	0.56	SYNONYMOUS_CODING CG34417 INTRON CG34417
2R	8908601	2R_8908601_SNP [dm3] 2R_13021096_SNP [dm6]	T	A	1.458e^-4	0.56	INTERGENIC	TF binding site mE1_TFBS_cad
3R	5448622	3R_5448622_SNP [dm3] 3R_9622900_SNP [dm6]	G	T	1.465e^-4	0.56	UPSTREAM CG8312 INTRON CG8312	TF binding site mE1_TFBS_cad
3L	2645491	3L_2645491_SNP [dm3] 3L_2645491_SNP [dm6]	A	T	1.468e^-4	0.56	INTRON CG1143
X	20215452	X_20215452_INS [dm3] X_20344425_INS [dm6]	AC	TTATGCCG	1.468e^-4	0.56	INTERGENIC
2L	19894375	2L_19894375_SNP [dm3] 2L_19894375_SNP [dm6]	G	C	1.469e^-4	0.56	INTRON sick
3L	1726825	3L_1726825_INS [dm3] 3L_1726825_INS [dm6]	A	AA	1.469e^-4	0.56	INTRON drpr
X	11683265	X_11683265_SNP [dm3] X_11789232_SNP [dm6]	C	G	1.470e^-4	0.56	INTRON Karl
3L	6092202	3L_6092202_SNP [dm3] 3L_6099102_SNP [dm6]	A	T	1.476e^-4	0.56	INTRON Ets65A
3L	6714269	3L_6714269_SNP [dm3] 3L_6721169_SNP [dm6]	T	A	1.478e^-4	0.56	INTERGENIC
2L	2660003	2L_2660003_SNP [dm3] 2L_2660003_SNP [dm6]	T	A	1.479e^-4	0.56	INTERGENIC
X	10158695	X_10158695_INS [dm3] X_10264662_INS [dm6]	G	GG	1.479e^-4	0.56	UTR_3_PRIME CG12643
3L	14100466	3L_14100466_SNP [dm3] 3L_14107366_SNP [dm6]	T	G	1.479e^-4	0.56	INTRON Sox21a	TF binding site mE1_TFBS_cad
2L	19890116	2L_19890116_SNP [dm3] 2L_19890116_SNP [dm6]	T	A	1.482e^-4	0.56	DOWNSTREAM CG10481 INTRON sick
3L	13488539	3L_13488539_SNP [dm3] 3L_13495439_SNP [dm6]	C	T	1.482e^-4	0.56	UPSTREAM Tgi INTRON Tgi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17891665	3L_17891665_SNP [dm3] 3L_17898565_SNP [dm6]	G	A	1.488e^-4	0.561	DOWNSTREAM Prestin INTERGENIC
X	8785031	X_8785031_SNP [dm3] X_8890998_SNP [dm6]	G	T	1.491e^-4	0.561	INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	12968016	3R_12968016_SNP [dm3] 3R_17142294_SNP [dm6]	G	A	1.495e^-4	0.562	INTRON TwdlW	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1381522	2L_1381522_SNP [dm3] 2L_1381522_SNP [dm6]	T	C	1.502e^-4	0.562	SYNONYMOUS_CODING lea UTR_3_PRIME lea UPSTREAM CR44898 EXON CR44897	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	19930941	2L_19930941_SNP [dm3] 2L_19930941_SNP [dm6]	G	A	1.505e^-4	0.562	INTRON sick
2R	17120729	2R_17120729_SNP [dm3] 2R_21233224_SNP [dm6]	A	G	1.506e^-4	0.562	INTRON ASPP
2L	20298567	2L_20298567_SNP [dm3] 2L_20298567_SNP [dm6]	C	G	1.514e^-4	0.563	INTERGENIC	TF binding site mE1_TFBS_sens
3R	10828808	3R_10828808_SNP [dm3] 3R_15003086_SNP [dm6]	G	A	1.515e^-4	0.563	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	5868035	2L_5868035_SNP [dm3] 2L_5868035_SNP [dm6]	A	G	1.522e^-4	0.563	INTRON rau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13763940	2R_13763940_SNP [dm3] 2R_17876435_SNP [dm6]	G	A	1.525e^-4	0.563	INTRON Elk
2L	20293172	2L_20293172_SNP [dm3] 2L_20293172_SNP [dm6]	T	A	1.531e^-4	0.563	INTERGENIC
3L	9735039	3L_9735039_SNP [dm3] 3L_9741939_SNP [dm6]	A	T	1.534e^-4	0.563	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	11180349	X_11180349_SNP [dm3] X_11286316_SNP [dm6]	A	T	1.535e^-4	0.563	INTRON CG44422
3R	24716074	3R_24716074_SNP [dm3] 3R_28890352_SNP [dm6]	C	A	1.539e^-4	0.563	INTRON Doa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	1730395	3L_1730395_SNP [dm3] 3L_1730395_SNP [dm6]	G	A	1.544e^-4	0.563	DOWNSTREAM Oseg4 INTRON drpr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	13317212	3L_13317212_SNP [dm3] 3L_13324112_SNP [dm6]	T	C	1.544e^-4	0.563	DOWNSTREAM CR44558 INTERGENIC
3L	14832054	3L_14832054_SNP [dm3] 3L_14838954_SNP [dm6]	A	T	1.553e^-4	0.563	INTRON CG17839
X	8291487	X_8291487_SNP [dm3] X_8397454_SNP [dm6]	T	A	1.553e^-4	0.563	UTR_3_PRIME CG15345
3L	9509743	3L_9509743_SNP [dm3] 3L_9516643_SNP [dm6]	C	A	1.556e^-4	0.563	INTRON CG33700
3R	5452887	3R_5452887_SNP [dm3] 3R_9627165_SNP [dm6]	T	C	1.559e^-4	0.563	UPSTREAM CG8319 & 1 other INTERGENIC	TF binding site mE1_TFBS_ttk
3R	8117798	3R_8117798_SNP [dm3] 3R_12292076_SNP [dm6]	C	T	1.566e^-4	0.563	INTRON svp
2L	4306168	2L_4306168_SNP [dm3] 2L_4306168_SNP [dm6]	G	C	1.568e^-4	0.563	DOWNSTREAM tutl INTRON tutl	TF binding site mE1_TFBS_chinmo
3L	2167737	3L_2167737_SNP [dm3] 3L_2167737_SNP [dm6]	G	A	1.570e^-4	0.563	UTR_3_PRIME CG15879
X	15264242	X_15264242_SNP [dm3] X_15370209_SNP [dm6]	T	C	1.576e^-4	0.563	INTRON acj6
3L	1733121	3L_1733121_SNP [dm3] 3L_1733121_SNP [dm6]	A	G	1.579e^-4	0.563	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12970527	3R_12970527_SNP [dm3] 3R_17144805_SNP [dm6]	T	G	1.583e^-4	0.563	UTR_3_PRIME m-cup DOWNSTREAM m-cup
3L	4350031	3L_4350031_SNP [dm3] 3L_4350031_SNP [dm6]	G	T	1.584e^-4	0.563	INTRON Cip4
2L	9129050	2L_9129050_SNP [dm3] 2L_9129050_SNP [dm6]	G	A	1.593e^-4	0.563	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14325039	X_14325039_SNP [dm3] X_14431006_SNP [dm6]	A	T	1.594e^-4	0.563	INTRON dpr8
2L	2435448	2L_2435448_DEL [dm3] 2L_2435448_DEL [dm6]	TTCTTCGGT	CA	1.594e^-4	0.563	INTRON dpp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	2085873	2L_2085873_SNP [dm3] 2L_2085873_SNP [dm6]	C	T	1.595e^-4	0.563	INTRON dpr3
3R	26042451	3R_26042451_SNP [dm3] 3R_30216729_SNP [dm6]	A	T	1.595e^-4	0.563	INTRON CecC
3R	5438840	3R_5438840_SNP [dm3] 3R_9613118_SNP [dm6]	A	G	1.597e^-4	0.563	INTRON CG8312
X	11781626	X_11781626_SNP [dm3] X_11887593_SNP [dm6]	C	A	1.601e^-4	0.563	UPSTREAM CG10353 & 1 other INTRON SelG	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	26419937	3R_26419937_SNP [dm3] 3R_30594215_SNP [dm6]	C	T	1.604e^-4	0.563	INTRON CG2246
3L	16725080	3L_16725080_SNP [dm3] 3L_16731980_SNP [dm6]	C	T	1.606e^-4	0.563	INTERGENIC
2R	17691722	2R_17691722_DEL [dm3] 2R_21804217_DEL [dm6]	TAGGATTAACT...	T	1.607e^-4	0.563	EXON CR9284
3R	9817331	3R_9817331_SNP [dm3] 3R_13991609_SNP [dm6]	T	G	1.610e^-4	0.563	INTRON rdx
3R	8388326	3R_8388326_SNP [dm3] 3R_12562604_SNP [dm6]	C	T	1.612e^-4	0.563	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
3R	5444101	3R_5444101_SNP [dm3] 3R_9618379_SNP [dm6]	G	T	1.613e^-4	0.563	INTRON CG8312
3R	5158230	3R_5158230_SNP [dm3] 3R_9332508_SNP [dm6]	T	A	1.615e^-4	0.563	UTR_3_PRIME CG8866 UPSTREAM CG16749 INTRON CG8866	TF binding site mE1_TFBS_cad
3R	5158232	3R_5158232_SNP [dm3] 3R_9332510_SNP [dm6]	T	G	1.615e^-4	0.563	UTR_3_PRIME CG8866 UPSTREAM CG16749 INTRON CG8866	TF binding site mE1_TFBS_cad
2R	8951312	2R_8951312_SNP [dm3] 2R_13063807_SNP [dm6]	T	A	1.619e^-4	0.563	INTRON Drl-2
2L	7097602	2L_7097602_SNP [dm3] 2L_7097602_SNP [dm6]	C	G	1.622e^-4	0.563	DOWNSTREAM Pvf3 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15077518	3R_15077518_SNP [dm3] 3R_19251796_SNP [dm6]	A	T	1.629e^-4	0.564	INTERGENIC
2R	11683570	2R_11683570_SNP [dm3] 2R_15796065_SNP [dm6]	T	G	1.631e^-4	0.564	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1901310	3L_1901310_SNP [dm3] 3L_1901310_SNP [dm6]	C	T	1.637e^-4	0.565	UTR_3_PRIME CG1887 INTRON CG1887	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
2L	15469663	2L_15469663_SNP [dm3] 2L_15469663_SNP [dm6]	C	A	1.643e^-4	0.565	UPSTREAM CR45353 INTERGENIC
2R	13442607	2R_13442607_SNP [dm3] 2R_17555102_SNP [dm6]	C	T	1.645e^-4	0.565	SYNONYMOUS_CODING MESR4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14854201	3R_14854201_SNP [dm3] 3R_19028479_SNP [dm6]	C	T	1.650e^-4	0.565	NON_SYNONYMOUS_CODING gatA UPSTREAM P5cr DOWNSTREAM NP15.6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9104742	2L_9104742_DEL [dm3] 2L_9104742_DEL [dm6]	CTA	C	1.650e^-4	0.565	INTERGENIC
3R	19501621	3R_19501621_SNP [dm3] 3R_23675899_SNP [dm6]	A	T	1.650e^-4	0.565	INTERGENIC
3R	25779128	3R_25779128_SNP [dm3] 3R_29953406_SNP [dm6]	G	A	1.667e^-4	0.568	SYNONYMOUS_CODING TkR99D
3L	9722198	3L_9722198_SNP [dm3] 3L_9729098_SNP [dm6]	G	A	1.668e^-4	0.568	UTR_3_PRIME Naa60 UPSTREAM ATPsyn-b DOWNSTREAM Naa60	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16875116	2L_16875116_SNP [dm3] 2L_16875116_SNP [dm6]	C	T	1.668e^-4	0.568	INTRON CR31781
2L	5756002	2L_5756002_SNP [dm3] 2L_5756002_SNP [dm6]	T	C	1.672e^-4	0.568	INTRON CG11030
3L	8207850	3L_8207850_SNP [dm3] 3L_8214750_SNP [dm6]	T	C	1.674e^-4	0.568	UPSTREAM CG8012 INTERGENIC
3L	18652035	3L_18652035_SNP [dm3] 3L_18658935_SNP [dm6]	A	G	1.683e^-4	0.569	INTRON MYPT-75D
3R	4180495	3R_4180495_SNP [dm3] 3R_8354773_SNP [dm6]	A	C	1.685e^-4	0.569	INTERGENIC
2L	2360614	2L_2360614_SNP [dm3] 2L_2360614_SNP [dm6]	A	G	1.687e^-4	0.569	INTRON Rab5
2L	14517189	2L_14517189_SNP [dm3] 2L_14517189_SNP [dm6]	C	T	1.695e^-4	0.57	UPSTREAM tRNA:G3:35Ba INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	4354841	3R_4354841_SNP [dm3] 3R_8529119_SNP [dm6]	C	G	1.702e^-4	0.57	UPSTREAM CG11741 INTERGENIC	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	17324015	2L_17324015_INS [dm3] 2L_17324015_INS [dm6]	A	AAA	1.707e^-4	0.57	INTERGENIC
2L	2021719	2L_2021719_SNP [dm3] 2L_2021719_SNP [dm6]	G	A	1.710e^-4	0.57	INTRON CG4238
2L	1479197	2L_1479197_SNP [dm3] 2L_1479197_SNP [dm6]	C	T	1.710e^-4	0.57	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11409403	X_11409403_SNP [dm3] X_11515370_SNP [dm6]	A	T	1.724e^-4	0.57	INTRON Drak	TF binding site mE1_TFBS_Kr
X	9849318	X_9849318_DEL [dm3] X_9955285_DEL [dm6]	TCGACT	T	1.726e^-4	0.57	INTERGENIC
3R	25588602	3R_25588602_SNP [dm3] 3R_29762880_SNP [dm6]	T	C	1.727e^-4	0.57	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2L	16180475	2L_16180475_SNP [dm3] 2L_16180475_SNP [dm6]	T	A	1.728e^-4	0.57	INTRON Ca-alpha1D
2L	19802428	2L_19802428_SNP [dm3] 2L_19802428_SNP [dm6]	A	G	1.728e^-4	0.57	INTRON sick
3L	18696786	3L_18696786_SNP [dm3] 3L_18703686_SNP [dm6]	G	A	1.729e^-4	0.57	INTERGENIC
2R	16325368	2R_16325368_SNP [dm3] 2R_20437863_SNP [dm6]	C	A	1.730e^-4	0.57	INTRON CG12484
2R	14154217	2R_14154217_SNP [dm3] 2R_18266712_SNP [dm6]	A	G	1.731e^-4	0.57	INTERGENIC
2R	19484343	2R_19484343_SNP [dm3] 2R_23596820_SNP [dm6]	G	A	1.736e^-4	0.57	INTRON apt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7129120	3L_7129120_SNP [dm3] 3L_7136020_SNP [dm6]	A	G	1.740e^-4	0.57	INTRON melt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14678764	X_14678764_SNP [dm3] X_14784731_SNP [dm6]	A	C	1.741e^-4	0.57	UTR_3_PRIME Ag5r UPSTREAM Ag5r2 DOWNSTREAM Ag5r
2R	3599792	2R_3599792_SNP [dm3] 2R_7712287_SNP [dm6]	A	G	1.742e^-4	0.57	UPSTREAM CG1942 DOWNSTREAM mir-4909 & 1 other INTERGENIC
2R	14678270	2R_14678270_SNP [dm3] 2R_18790765_SNP [dm6]	T	C	1.756e^-4	0.572	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24412989	3R_24412989_SNP [dm3] 3R_28587267_SNP [dm6]	T	C	1.757e^-4	0.572	EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	14271079	2R_14271079_MNP [dm3] 2R_18383574_MNP [dm6]	ACA	CAG	1.762e^-4	0.572	UPSTREAM IM1 & 2 others INTERGENIC
3L	14493810	3L_14493810_SNP [dm3] 3L_14500710_SNP [dm6]	C	A	1.763e^-4	0.572	INTRON bbg
3L	16896011	3L_16896011_SNP [dm3] 3L_16902911_SNP [dm6]	A	T	1.765e^-4	0.572	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo
3R	14771185	3R_14771185_INS [dm3] 3R_18945463_INS [dm6]	A	AAAAGA	1.770e^-4	0.572	INTRON CG42613
2L	5557570	2L_5557570_SNP [dm3] 2L_5557570_SNP [dm6]	T	A	1.775e^-4	0.572	INTRON GluRIIA
3R	12970762	3R_12970762_SNP [dm3] 3R_17145040_SNP [dm6]	A	T	1.777e^-4	0.572	UTR_3_PRIME m-cup DOWNSTREAM m-cup
3R	16485705	3R_16485705_SNP [dm3] 3R_20659983_SNP [dm6]	C	T	1.777e^-4	0.572	UPSTREAM Nep4 INTERGENIC
X	19932654	X_19932654_SNP [dm3] X_20038621_SNP [dm6]	A	T	1.796e^-4	0.576	INTRON Dop2R
3L	1564689	3L_1564689_SNP [dm3] 3L_1564689_SNP [dm6]	T	C	1.798e^-4	0.576	UPSTREAM CG12003 INTRON CG7879
3L	4715332	3L_4715332_SNP [dm3] 3L_4715332_SNP [dm6]	T	A	1.802e^-4	0.576	INTRON RhoGEF64C
2L	9104684	2L_9104684_SNP [dm3] 2L_9104684_SNP [dm6]	A	T	1.803e^-4	0.576	INTERGENIC
X	16149242	X_16149242_SNP [dm3] X_16255209_SNP [dm6]	G	A	1.804e^-4	0.576	DOWNSTREAM snRNA:U2:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17870058	2L_17870058_SNP [dm3] 2L_17870058_SNP [dm6]	G	A	1.808e^-4	0.576	INTRON CadN2	TF binding site mE1_TFBS_HSA
X	12432863	X_12432863_SNP [dm3] X_12538830_SNP [dm6]	T	G	1.809e^-4	0.576	INTRON CG43921
2L	17886984	2L_17886984_SNP [dm3] 2L_17886984_SNP [dm6]	A	T	1.813e^-4	0.576	INTERGENIC
3R	14771266	3R_14771266_SNP [dm3] 3R_18945544_SNP [dm6]	G	T	1.814e^-4	0.576	INTRON CG42613
2L	7100403	2L_7100403_SNP [dm3] 2L_7100403_SNP [dm6]	G	A	1.818e^-4	0.576	SYNONYMOUS_CODING Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	16008929	2L_16008929_SNP [dm3] 2L_16008929_SNP [dm6]	C	T	1.821e^-4	0.576	INTRON beat-Ic	TF binding site mE1_TFBS_HSA
2L	606452	2L_606452_SNP [dm3] 2L_606452_SNP [dm6]	C	T	1.832e^-4	0.576	DOWNSTREAM CR43648 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13682590	3R_13682590_SNP [dm3] 3R_17856868_SNP [dm6]	C	G	1.832e^-4	0.576	INTRON tinc
3L	8253764	3L_8253764_SNP [dm3] 3L_8260664_SNP [dm6]	T	C	1.834e^-4	0.576	SYNONYMOUS_CODING Dscam4
2L	1474417	2L_1474417_SNP [dm3] 2L_1474417_SNP [dm6]	C	T	1.834e^-4	0.576	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14271043	2R_14271043_DEL [dm3] 2R_18383538_DEL [dm6]	TAATGTCTTC	T	1.843e^-4	0.577	UPSTREAM IM1 & 1 other INTERGENIC
3L	6689263	3L_6689263_SNP [dm3] 3L_6696163_SNP [dm6]	A	T	1.846e^-4	0.577	INTRON SP1173
3R	4349198	3R_4349198_SNP [dm3] 3R_8523476_SNP [dm6]	A	T	1.851e^-4	0.577	NON_SYNONYMOUS_CODING CG31454 UPSTREAM CG31259
2R	12281986	2R_12281986_SNP [dm3] 2R_16394481_SNP [dm6]	A	T	1.855e^-4	0.577	INTRON Sema-2b
X	9007178	X_9007178_SNP [dm3] X_9113145_SNP [dm6]	T	A	1.857e^-4	0.577	INTRON AP-1gamma
X	17951829	X_17951829_SNP [dm3] X_18057796_SNP [dm6]	A	C	1.859e^-4	0.577	INTRON Sh
3L	11223898	3L_11223898_SNP [dm3] 3L_11230798_SNP [dm6]	G	T	1.870e^-4	0.577	DOWNSTREAM CR45405 & 1 other INTERGENIC
3L	12435444	3L_12435444_SNP [dm3] 3L_12442344_SNP [dm6]	C	A	1.875e^-4	0.577	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10571315	X_10571315_SNP [dm3] X_10677282_SNP [dm6]	C	T	1.877e^-4	0.577	INTRON X11Lbeta
X	17311115	X_17311115_SNP [dm3] X_17417082_SNP [dm6]	G	A	1.878e^-4	0.577	INTRON CG8611	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	648461	2L_648461_DEL [dm3] 2L_648461_DEL [dm6]	AAG	A	1.882e^-4	0.577	INTRON ds
2R	15173056	2R_15173056_DEL [dm3] 2R_19285551_DEL [dm6]	AGTCTAACAAAATTAGTA...	A	1.882e^-4	0.577	UTR_3_PRIME CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
2L	2435421	2L_2435421_SNP [dm3] 2L_2435421_SNP [dm6]	A	C	1.882e^-4	0.577	INTRON dpp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	5448586	3R_5448586_SNP [dm3] 3R_9622864_SNP [dm6]	A	T	1.883e^-4	0.577	UPSTREAM CG8312 INTRON CG8312	TF binding site mE1_TFBS_cad
2L	13626041	2L_13626041_SNP [dm3] 2L_13626041_SNP [dm6]	G	A	1.888e^-4	0.577	INTRON kuz
X	11180351	X_11180351_SNP [dm3] X_11286318_SNP [dm6]	A	C	1.888e^-4	0.577	INTRON CG44422
2R	15895805	2R_15895805_SNP [dm3] 2R_20008300_SNP [dm6]	T	C	1.889e^-4	0.577	DOWNSTREAM CR44628 INTERGENIC
3R	3719215	3R_3719215_SNP [dm3] 3R_7893493_SNP [dm6]	A	G	1.901e^-4	0.577	INTRON mRpS9 & 1 other
3R	12967868	3R_12967868_SNP [dm3] 3R_17142146_SNP [dm6]	G	A	1.907e^-4	0.577	SYNONYMOUS_CODING TwdlW DOWNSTREAM CG5265	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5897074	X_5897074_SNP [dm3] X_6003041_SNP [dm6]	T	C	1.914e^-4	0.577	INTRON CR44498
2L	763246	2L_763246_DEL [dm3] 2L_763246_DEL [dm6]	GGG	G	1.915e^-4	0.577	DOWNSTREAM GABA-B-R3 INTERGENIC
2L	20237583	2L_20237583_SNP [dm3] 2L_20237583_SNP [dm6]	G	C	1.917e^-4	0.577	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14832139	3L_14832139_SNP [dm3] 3L_14839039_SNP [dm6]	T	C	1.921e^-4	0.577	INTRON CG17839
2L	1254677	2L_1254677_INS [dm3] 2L_1254677_INS [dm6]	G	GTGAGTG	1.925e^-4	0.577	INTERGENIC
2R	14271036	2R_14271036_SNP [dm3] 2R_18383531_SNP [dm6]	A	T	1.925e^-4	0.577	UPSTREAM IM1 & 1 other INTERGENIC
3L	14470998	3L_14470998_SNP [dm3] 3L_14477898_SNP [dm6]	C	A	1.929e^-4	0.577	INTRON bbg	TF binding site mE1_TFBS_Trl
3L	9513593	3L_9513593_SNP [dm3] 3L_9520493_SNP [dm6]	G	T	1.930e^-4	0.577	INTRON CG33700
X	13095605	X_13095605_INS [dm3] X_13201572_INS [dm6]	G	GAAAATGGGAG...	1.932e^-4	0.577	FRAME_SHIFT CG44437 INTRON sno	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	26323003	3R_26323003_SNP [dm3] 3R_30497281_SNP [dm6]	A	C	1.933e^-4	0.577	INTRON PH4alphaNE1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26321569	3R_26321569_SNP [dm3] 3R_30495847_SNP [dm6]	G	A	1.934e^-4	0.577	DOWNSTREAM PH4alphaNE1 INTRON PH4alphaMP
X	12773814	X_12773814_SNP [dm3] X_12879781_SNP [dm6]	C	T	1.935e^-4	0.577	INTRON Pde9	TF binding site BDTNP1_TFBS_dl
2R	7272213	2R_7272213_SNP [dm3] 2R_11384708_SNP [dm6]	G	A	1.937e^-4	0.577	UPSTREAM Sod3 DOWNSTREAM sprt INTERGENIC	TF binding site mE1_TFBS_cad
2L	5883882	2L_5883882_SNP [dm3] 2L_5883882_SNP [dm6]	C	A	1.941e^-4	0.578	NON_SYNONYMOUS_CODING CG44574 DOWNSTREAM Sfp26Ac
3L	8681778	3L_8681778_SNP [dm3] 3L_8688678_SNP [dm6]	A	C	1.949e^-4	0.578	INTERGENIC
3R	24412419	3R_24412419_SNP [dm3] 3R_28586697_SNP [dm6]	G	A	1.954e^-4	0.578	EXON MRE23	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
2R	17894705	2R_17894705_SNP [dm3] 2R_22007200_SNP [dm6]	C	T	1.955e^-4	0.578	INTRON CG34370
2L	10482563	2L_10482563_SNP [dm3] 2L_10482563_SNP [dm6]	C	A	1.956e^-4	0.578	NON_SYNONYMOUS_CODING RluA-2 UTR_3_PRIME RluA-2 UPSTREAM Grip75	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	17952263	X_17952263_SNP [dm3] X_18058230_SNP [dm6]	A	G	1.958e^-4	0.578	INTRON Sh
2L	6506250	2L_6506250_SNP [dm3] 2L_6506250_SNP [dm6]	A	T	1.962e^-4	0.578	INTRON CG31637
X	8156701	X_8156701_SNP [dm3] X_8262668_SNP [dm6]	G	T	1.976e^-4	0.579	INTRON CG1632
3L	22239192	3L_22239192_INS [dm3] 3L_22246092_INS [dm6]	C	CAGAAACACAC...	1.977e^-4	0.579	UTR_3_PRIME olf413
3R	18706404	3R_18706404_SNP [dm3] 3R_22880682_SNP [dm6]	G	T	1.980e^-4	0.579	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18475339	2R_18475339_SNP [dm3] 2R_22587834_SNP [dm6]	A	C	1.981e^-4	0.579	INTRON dnr1
2R	18475340	2R_18475340_SNP [dm3] 2R_22587835_SNP [dm6]	G	A	1.981e^-4	0.579	INTRON dnr1
X	3133403	X_3133403_SNP [dm3] X_3239370_SNP [dm6]	G	A	1.989e^-4	0.579	DOWNSTREAM ng2 INTRON dnc
X	4208104	X_4208104_SNP [dm3] X_4314071_SNP [dm6]	A	G	1.998e^-4	0.579	DOWNSTREAM mei-9 INTRON CR44957
3R	15077454	3R_15077454_SNP [dm3] 3R_19251732_SNP [dm6]	C	G	2.007e^-4	0.579	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	16135147	2L_16135147_SNP [dm3] 2L_16135147_SNP [dm6]	G	A	2.011e^-4	0.579	DOWNSTREAM CR44871 & 1 other INTRON CG34168
3L	837843	3L_837843_SNP [dm3] 3L_837843_SNP [dm6]	C	T	2.014e^-4	0.579	UPSTREAM CG13887 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	2435393	2L_2435393_SNP [dm3] 2L_2435393_SNP [dm6]	G	T	2.017e^-4	0.579	INTRON dpp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	2868311	3R_2868311_INS [dm3] 3R_7042589_INS [dm6]	C	CGGA	2.021e^-4	0.579	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	743728	X_743728_SNP [dm3] X_849695_SNP [dm6]	C	T	2.024e^-4	0.579	INTRON CG43867
2R	13539767	2R_13539767_SNP [dm3] 2R_17652262_SNP [dm6]	C	A	2.027e^-4	0.579	INTRON CCHa1-R
3L	14247652	3L_14247652_SNP [dm3] 3L_14254552_SNP [dm6]	A	T	2.029e^-4	0.579	INTERGENIC
2L	5511194	2L_5511194_SNP [dm3] 2L_5511194_SNP [dm6]	A	C	2.033e^-4	0.579	INTERGENIC
X	8156906	X_8156906_SNP [dm3] X_8262873_SNP [dm6]	G	T	2.036e^-4	0.579	INTRON CG1632	TF binding site BDTNP1_TFBS_da
2L	2435462	2L_2435462_DEL [dm3] 2L_2435462_DEL [dm6]	AAATT	A	2.044e^-4	0.579	INTRON dpp	TF binding site mE1_TFBS_cnc
2L	16135106	2L_16135106_DEL [dm3] 2L_16135106_DEL [dm6]	ATGAAA	A	2.051e^-4	0.579	DOWNSTREAM CR44871 & 1 other INTRON CG34168
2L	763271	2L_763271_SNP [dm3] 2L_763271_SNP [dm6]	T	C	2.053e^-4	0.579	DOWNSTREAM GABA-B-R3 INTERGENIC
3L	16202346	3L_16202346_SNP [dm3] 3L_16209246_SNP [dm6]	C	T	2.057e^-4	0.579	INTERGENIC	TF binding site mE1_TFBS_cad
X	22315276	X_22315276_SNP [dm3] X_22913440_SNP [dm6]	T	A	2.059e^-4	0.579	INTERGENIC
2R	12282763	2R_12282763_SNP [dm3] 2R_16395258_SNP [dm6]	A	T	2.060e^-4	0.579	INTRON Sema-2b
3R	15077524	3R_15077524_SNP [dm3] 3R_19251802_SNP [dm6]	A	G	2.068e^-4	0.579	INTERGENIC
3R	4362491	3R_4362491_SNP [dm3] 3R_8536769_SNP [dm6]	A	G	2.069e^-4	0.579	INTERGENIC
3R	19382195	3R_19382195_DEL [dm3] 3R_23556473_DEL [dm6]	AA	A	2.070e^-4	0.579	UTR_5_PRIME CG10164 UPSTREAM beat-IV
2R	8133682	2R_8133682_SNP [dm3] 2R_12246177_SNP [dm6]	T	A	2.071e^-4	0.579	DOWNSTREAM CR44315 INTERGENIC
X	7484641	X_7484641_SNP [dm3] X_7590608_SNP [dm6]	G	C	2.075e^-4	0.579	INTERGENIC	regulatory region REDfly_CRMs
2L	20052445	2L_20052445_SNP [dm3] 2L_20052445_SNP [dm6]	C	T	2.079e^-4	0.579	INTRON sNPF
X	14804241	X_14804241_SNP [dm3] X_14910208_SNP [dm6]	C	G	2.082e^-4	0.579	SYNONYMOUS_CODING CG14406 UPSTREAM CG9509 INTRON Flo2
2R	13723571	2R_13723571_SNP [dm3] 2R_17836066_SNP [dm6]	A	G	2.088e^-4	0.579	INTRON grh
3R	27136537	3R_27136537_SNP [dm3] 3R_31310815_SNP [dm6]	G	C	2.089e^-4	0.579	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	17790757	2L_17790757_SNP [dm3] 2L_17790757_SNP [dm6]	G	A	2.089e^-4	0.579	INTRON CadN2
X	7061945	X_7061945_SNP [dm3] X_7167912_SNP [dm6]	T	C	2.092e^-4	0.579	INTRON CG9650 & 1 other EXON CR44357
3R	3341617	3R_3341617_DEL [dm3] 3R_7515895_DEL [dm6]	TTGCT	T	2.100e^-4	0.579	UPSTREAM alpha-Est8 INTERGENIC
3R	25672069	3R_25672069_SNP [dm3] 3R_29846347_SNP [dm6]	T	A	2.101e^-4	0.579	INTRON Cad99C
2R	12112716	2R_12112716_SNP [dm3] 2R_16225211_SNP [dm6]	A	G	2.102e^-4	0.579	UTR_5_PRIME CG15706
3L	5234139	3L_5234139_INS [dm3] 3L_5241039_INS [dm6]	C	CC	2.111e^-4	0.579	INTRON shep
3L	14493829	3L_14493829_SNP [dm3] 3L_14500729_SNP [dm6]	C	A	2.113e^-4	0.579	INTRON bbg
2L	3168595	2L_3168595_SNP [dm3] 2L_3168595_SNP [dm6]	T	C	2.127e^-4	0.579	UTR_3_PRIME Hydr2 UPSTREAM tRNA:S7:23Eb
2R	11804667	2R_11804667_SNP [dm3] 2R_15917162_SNP [dm6]	T	G	2.128e^-4	0.579	DOWNSTREAM CR44373 INTRON sli	TF binding site mE1_TFBS_cad
3L	14100486	3L_14100486_SNP [dm3] 3L_14107386_SNP [dm6]	C	A	2.128e^-4	0.579	INTRON Sox21a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	5557577	2L_5557577_SNP [dm3] 2L_5557577_SNP [dm6]	A	T	2.128e^-4	0.579	SPLICE_SITE_REGION GluRIIA INTRON GluRIIA
2L	7962127	2L_7962127_SNP [dm3] 2L_7962127_SNP [dm6]	A	C	2.129e^-4	0.579	INTRON Snoo
2R	17693825	2R_17693825_DEL [dm3] 2R_21806320_DEL [dm6]	TATTACT	T	2.129e^-4	0.579	INTERGENIC	TF binding site mE1_TFBS_kn
X	7613947	X_7613947_SNP [dm3] X_7719914_SNP [dm6]	C	T	2.137e^-4	0.579	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9463956	2L_9463956_SNP [dm3] 2L_9463956_SNP [dm6]	C	A	2.139e^-4	0.579	UTR_3_PRIME numb DOWNSTREAM numb
3L	5216243	3L_5216243_SNP [dm3] 3L_5223143_SNP [dm6]	G	A	2.148e^-4	0.579	INTRON shep
3L	7479886	3L_7479886_SNP [dm3] 3L_7486786_SNP [dm6]	C	T	2.151e^-4	0.579	INTRON mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5467771	3R_5467771_INS [dm3] 3R_9642049_INS [dm6]	T	TT	2.153e^-4	0.579	INTRON Dh44
2L	6601300	2L_6601300_SNP [dm3] 2L_6601300_SNP [dm6]	T	A	2.158e^-4	0.579	UPSTREAM CG11319 INTERGENIC
X	17952247	X_17952247_SNP [dm3] X_18058214_SNP [dm6]	A	C	2.158e^-4	0.579	INTRON Sh
2R	11809705	2R_11809705_SNP [dm3] 2R_15922200_SNP [dm6]	G	A	2.161e^-4	0.579	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
3L	9317825	3L_9317825_SNP [dm3] 3L_9324725_SNP [dm6]	T	C	2.168e^-4	0.579	INTERGENIC
2R	16320060	2R_16320060_SNP [dm3] 2R_20432555_SNP [dm6]	T	A	2.168e^-4	0.579	INTRON CG12484
3L	6006475	3L_6006475_SNP [dm3] 3L_6013375_SNP [dm6]	G	A	2.169e^-4	0.579	INTRON PVRAP
3L	13310084	3L_13310084_DEL [dm3] 3L_13316984_DEL [dm6]	TA	T	2.169e^-4	0.579	INTERGENIC
X	11756604	X_11756604_SNP [dm3] X_11862571_SNP [dm6]	T	C	2.170e^-4	0.579	SYNONYMOUS_CODING ATP7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10722068	3L_10722068_SNP [dm3] 3L_10728968_SNP [dm6]	T	C	2.172e^-4	0.579	INTERGENIC
3L	11925898	3L_11925898_SNP [dm3] 3L_11932798_SNP [dm6]	C	T	2.172e^-4	0.579	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20215234	X_20215234_SNP [dm3] X_20344207_SNP [dm6]	C	A	2.180e^-4	0.579	INTERGENIC	transposable element FlyBase
3R	27130631	3R_27130631_SNP [dm3] 3R_31304909_SNP [dm6]	G	C	2.183e^-4	0.579	INTRON CG11340	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	19123045	2L_19123045_SNP [dm3] 2L_19123045_SNP [dm6]	C	G	2.183e^-4	0.579	DOWNSTREAM l_2_37Cb INTRON l_2_37Cc
3L	654014	3L_654014_SNP [dm3] 3L_654014_SNP [dm6]	G	T	2.184e^-4	0.579	UTR_5_PRIME MED30 UPSTREAM Rev1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	654016	3L_654016_DEL [dm3] 3L_654016_DEL [dm6]	AA	A	2.184e^-4	0.579	UTR_5_PRIME MED30 UPSTREAM Rev1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3R	26320320	3R_26320320_SNP [dm3] 3R_30494598_SNP [dm6]	C	T	2.186e^-4	0.579	INTRON PH4alphaMP
2R	10331982	2R_10331982_SNP [dm3] 2R_14444477_SNP [dm6]	G	A	2.192e^-4	0.579	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27128968	3R_27128968_SNP [dm3] 3R_31303246_SNP [dm6]	C	T	2.193e^-4	0.579	SYNONYMOUS_CODING CG11340	TF binding site mE1_TFBS_sens
3L	4238728	3L_4238728_SNP [dm3] 3L_4238728_SNP [dm6]	A	T	2.196e^-4	0.579	INTERGENIC
3L	12450024	3L_12450024_SNP [dm3] 3L_12456924_SNP [dm6]	G	A	2.198e^-4	0.579	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	7309130	2L_7309130_SNP [dm3] 2L_7309130_SNP [dm6]	C	T	2.201e^-4	0.579	INTRON wg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2669602	2L_2669602_SNP [dm3] 2L_2669602_SNP [dm6]	G	T	2.201e^-4	0.579	UPSTREAM Gr23a INTERGENIC
3L	4006853	3L_4006853_SNP [dm3] 3L_4006853_SNP [dm6]	A	G	2.202e^-4	0.579	DOWNSTREAM CG14985 INTERGENIC
X	11320928	X_11320928_MNP [dm3] X_11426895_MNP [dm6]	GCGG	TTTT	2.203e^-4	0.579	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11320932	X_11320932_INS [dm3] X_11426899_INS [dm6]	A	AAT	2.203e^-4	0.579	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19889708	2R_19889708_SNP [dm3] 2R_24002185_SNP [dm6]	T	C	2.210e^-4	0.579	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_chinmo
3R	27124410	3R_27124410_SNP [dm3] 3R_31298688_SNP [dm6]	G	T	2.216e^-4	0.579	INTERGENIC
X	16146285	X_16146285_SNP [dm3] X_16252252_SNP [dm6]	G	T	2.218e^-4	0.579	INTERGENIC
X	16890271	X_16890271_SNP [dm3] X_16996238_SNP [dm6]	T	G	2.218e^-4	0.579	INTRON CG45002
2L	845166	2L_845166_INS [dm3] 2L_845166_INS [dm6]	A	ATGTTAGTCATAA...	2.218e^-4	0.579	INTRON drongo	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5594395	X_5594395_SNP [dm3] X_5700362_SNP [dm6]	G	T	2.223e^-4	0.579	INTRON CG4096
2R	19504762	2R_19504762_SNP [dm3] 2R_23617239_SNP [dm6]	G	A	2.226e^-4	0.579	UPSTREAM CG17664 INTERGENIC	TF binding site mE1_TFBS_sens
2L	606477	2L_606477_SNP [dm3] 2L_606477_SNP [dm6]	A	G	2.232e^-4	0.579	DOWNSTREAM CR43648 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19318944	3L_19318944_SNP [dm3] 3L_19325844_SNP [dm6]	A	C	2.241e^-4	0.579	INTRON pip
3L	4715335	3L_4715335_SNP [dm3] 3L_4715335_SNP [dm6]	T	C	2.245e^-4	0.579	INTRON RhoGEF64C
X	18262665	X_18262665_SNP [dm3] X_18368632_SNP [dm6]	T	G	2.245e^-4	0.579	INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	3886319	2L_3886319_SNP [dm3] 2L_3886319_SNP [dm6]	C	G	2.249e^-4	0.579	INTRON capu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	18264596	X_18264596_SNP [dm3] X_18370563_SNP [dm6]	A	G	2.252e^-4	0.579	UPSTREAM CrebB & 1 other INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Trl
2L	15559403	2L_15559403_SNP [dm3] 2L_15559403_SNP [dm6]	G	A	2.254e^-4	0.579	INTRON kek3
3L	13637498	3L_13637498_SNP [dm3] 3L_13644398_SNP [dm6]	T	A	2.254e^-4	0.579	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	19382209	3R_19382209_SNP [dm3] 3R_23556487_SNP [dm6]	A	G	2.255e^-4	0.579	UTR_5_PRIME CG10164 UPSTREAM beat-IV
X	16149243	X_16149243_SNP [dm3] X_16255210_SNP [dm6]	C	A	2.255e^-4	0.579	DOWNSTREAM snRNA:U2:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	22166461	2L_22166461_SNP [dm3] 2L_22166461_SNP [dm6]	A	C	2.255e^-4	0.579	UTR_3_PRIME Clamp DOWNSTREAM CG42748
3R	27101747	3R_27101747_SNP [dm3] 3R_31276025_SNP [dm6]	G	T	2.256e^-4	0.579	INTERGENIC
2L	10428701	2L_10428701_SNP [dm3] 2L_10428701_SNP [dm6]	A	T	2.261e^-4	0.579	UPSTREAM CG5188 DOWNSTREAM KdelR INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	677254	3L_677254_SNP [dm3] 3L_677254_SNP [dm6]	T	A	2.265e^-4	0.579	DOWNSTREAM CG17129 INTERGENIC
3R	26322673	3R_26322673_SNP [dm3] 3R_30496951_SNP [dm6]	G	T	2.266e^-4	0.579	UPSTREAM PH4alphaMP INTRON PH4alphaNE1	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	2435420	2L_2435420_SNP [dm3] 2L_2435420_SNP [dm6]	A	G	2.274e^-4	0.579	INTRON dpp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	13570329	3R_13570329_SNP [dm3] 3R_17744607_SNP [dm6]	A	C	2.274e^-4	0.579	INTRON TyrRII	TF binding site mE1_TFBS_cad
2R	19504761	2R_19504761_SNP [dm3] 2R_23617238_SNP [dm6]	T	C	2.275e^-4	0.579	UPSTREAM CG17664 INTERGENIC	TF binding site mE1_TFBS_sens
2L	19593601	2L_19593601_SNP [dm3] 2L_19593601_SNP [dm6]	G	T	2.276e^-4	0.579	INTRON Lar
2L	17283214	2L_17283214_SNP [dm3] 2L_17283214_SNP [dm6]	G	A	2.281e^-4	0.579	INTERGENIC
2L	19840286	2L_19840286_SNP [dm3] 2L_19840286_SNP [dm6]	C	A	2.291e^-4	0.581	INTRON sick
2L	2314481	2L_2314481_SNP [dm3] 2L_2314481_SNP [dm6]	C	A	2.305e^-4	0.581	INTRON CG9967 & 1 other
X	9441548	X_9441548_SNP [dm3] X_9547515_SNP [dm6]	T	G	2.312e^-4	0.581	INTRON CG32700
2L	21795611	2L_21795611_SNP [dm3] 2L_21795611_SNP [dm6]	C	G	2.316e^-4	0.581	UPSTREAM CG31612 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
3R	27130562	3R_27130562_SNP [dm3] 3R_31304840_SNP [dm6]	G	T	2.320e^-4	0.581	INTRON CG11340	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17302602	2L_17302602_SNP [dm3] 2L_17302602_SNP [dm6]	T	A	2.326e^-4	0.581	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13319919	2L_13319919_SNP [dm3] 2L_13319919_SNP [dm6]	G	A	2.327e^-4	0.581	INTRON CG43778	TF binding site mE1_TFBS_HSA
3L	712066	3L_712066_SNP [dm3] 3L_712066_SNP [dm6]	G	A	2.329e^-4	0.581	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	14517389	3L_14517389_SNP [dm3] 3L_14524289_SNP [dm6]	C	T	2.331e^-4	0.581	INTRON bbg
3L	677700	3L_677700_SNP [dm3] 3L_677700_SNP [dm6]	T	A	2.334e^-4	0.581	DOWNSTREAM CG17129 INTERGENIC
3L	4243760	3L_4243760_SNP [dm3] 3L_4243760_SNP [dm6]	G	C	2.339e^-4	0.581	SPLICE_SITE_REGION pav INTRON pav	TF binding site mE1_TFBS_sens
3R	5466140	3R_5466140_SNP [dm3] 3R_9640418_SNP [dm6]	T	C	2.341e^-4	0.581	UPSTREAM Dh44 INTRON Dh44
3L	13169347	3L_13169347_SNP [dm3] 3L_13176247_SNP [dm6]	T	G	2.344e^-4	0.581	SYNONYMOUS_CODING snky
3L	19318930	3L_19318930_SNP [dm3] 3L_19325830_SNP [dm6]	T	C	2.345e^-4	0.581	INTRON pip
2R	5529696	2R_5529696_SNP [dm3] 2R_9642191_SNP [dm6]	G	A	2.346e^-4	0.581	INTRON Mmp2
X	4293464	X_4293464_SNP [dm3] X_4399431_SNP [dm6]	C	G	2.346e^-4	0.581	INTRON CR32773
3L	837739	3L_837739_INS [dm3] 3L_837739_INS [dm6]	T	TA	2.346e^-4	0.581	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3R	4363255	3R_4363255_SNP [dm3] 3R_8537533_SNP [dm6]	A	G	2.351e^-4	0.581	INTERGENIC
2L	15559402	2L_15559402_SNP [dm3] 2L_15559402_SNP [dm6]	G	A	2.362e^-4	0.581	INTRON kek3
X	2836558	X_2836558_INS [dm3] X_2942525_INS [dm6]	A	AGCTCTA	2.365e^-4	0.581	UPSTREAM CG14422 DOWNSTREAM CG14421 INTRON kirre
2L	19123059	2L_19123059_SNP [dm3] 2L_19123059_SNP [dm6]	A	T	2.369e^-4	0.581	DOWNSTREAM l_2_37Cb INTRON l_2_37Cc
2L	19933467	2L_19933467_SNP [dm3] 2L_19933467_SNP [dm6]	T	A	2.375e^-4	0.581	DOWNSTREAM CR45183 INTRON sick
2R	14271099	2R_14271099_SNP [dm3] 2R_18383594_SNP [dm6]	G	A	2.376e^-4	0.581	UPSTREAM IM1 & 2 others INTERGENIC
3R	27130557	3R_27130557_SNP [dm3] 3R_31304835_SNP [dm6]	T	A	2.382e^-4	0.581	INTRON CG11340	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4222225	2L_4222225_SNP [dm3] 2L_4222225_SNP [dm6]	A	T	2.383e^-4	0.581	UPSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	5918420	2L_5918420_SNP [dm3] 2L_5918420_SNP [dm6]	C	T	2.383e^-4	0.581	SYNONYMOUS_CODING bchs
2L	17887868	2L_17887868_SNP [dm3] 2L_17887868_SNP [dm6]	A	T	2.384e^-4	0.581	INTERGENIC
2R	15296567	2R_15296567_SNP [dm3] 2R_19409062_SNP [dm6]	C	T	2.391e^-4	0.581	UTR_3_PRIME hts DOWNSTREAM hts INTRON hts
X	10283382	X_10283382_SNP [dm3] X_10389349_SNP [dm6]	A	G	2.393e^-4	0.581	INTRON flw
3L	21408996	3L_21408996_SNP [dm3] 3L_21415896_SNP [dm6]	A	T	2.394e^-4	0.581	INTRON rgn
3R	6752657	3R_6752657_SNP [dm3] 3R_10926935_SNP [dm6]	T	C	2.397e^-4	0.581	INTERGENIC
3L	18010104	3L_18010104_SNP [dm3] 3L_18017004_SNP [dm6]	T	G	2.398e^-4	0.581	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
2L	2273338	2L_2273338_SNP [dm3] 2L_2273338_SNP [dm6]	G	C	2.404e^-4	0.581	INTRON CR43753
3L	5271645	3L_5271645_SNP [dm3] 3L_5278545_SNP [dm6]	C	T	2.409e^-4	0.581	UPSTREAM shep INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	19903507	2L_19903507_SNP [dm3] 2L_19903507_SNP [dm6]	C	T	2.410e^-4	0.581	INTRON sick
2L	4624701	2L_4624701_SNP [dm3] 2L_4624701_SNP [dm6]	C	T	2.413e^-4	0.581	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4238717	3L_4238717_SNP [dm3] 3L_4238717_SNP [dm6]	G	T	2.414e^-4	0.581	INTERGENIC
3L	12402215	3L_12402215_SNP [dm3] 3L_12409115_SNP [dm6]	A	C	2.417e^-4	0.581	UPSTREAM CG32103 INTRON CG32103
X	7613485	X_7613485_SNP [dm3] X_7719452_SNP [dm6]	G	A	2.430e^-4	0.581	INTERGENIC
3R	5447210	3R_5447210_SNP [dm3] 3R_9621488_SNP [dm6]	A	T	2.431e^-4	0.581	INTRON CG8312	TF binding site mE1_TFBS_cad
3R	4375176	3R_4375176_SNP [dm3] 3R_8549454_SNP [dm6]	C	A	2.433e^-4	0.581	INTERGENIC
3R	4382182	3R_4382182_SNP [dm3] 3R_8556460_SNP [dm6]	G	A	2.438e^-4	0.581	INTERGENIC
3R	10827221	3R_10827221_SNP [dm3] 3R_15001499_SNP [dm6]	C	A	2.439e^-4	0.581	INTERGENIC
2L	673251	2L_673251_SNP [dm3] 2L_673251_SNP [dm6]	A	G	2.439e^-4	0.581	INTRON ds
3L	7467554	3L_7467554_SNP [dm3] 3L_7474454_SNP [dm6]	G	A	2.441e^-4	0.581	INTERGENIC
2L	17285832	2L_17285832_INS [dm3] 2L_17285832_INS [dm6]	C	CATC	2.441e^-4	0.581	UPSTREAM CG15140 INTERGENIC	TF binding site mE1_TFBS_inv
3R	27138931	3R_27138931_SNP [dm3] 3R_31313209_SNP [dm6]	C	T	2.441e^-4	0.581	INTRON CG34347	TF binding site mE1_TFBS_inv
3L	9555349	3L_9555349_SNP [dm3] 3L_9562249_SNP [dm6]	A	G	2.442e^-4	0.581	INTRON CG42673
3L	15648887	3L_15648887_SNP [dm3] 3L_15655787_SNP [dm6]	G	A	2.444e^-4	0.581	SYNONYMOUS_CODING Eig71Ee DOWNSTREAM Eig71Ef
X	14803290	X_14803290_SNP [dm3] X_14909257_SNP [dm6]	G	T	2.448e^-4	0.581	UTR_5_PRIME CG9509 UPSTREAM CG9509 DOWNSTREAM CG14406 INTRON Flo2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	10297857	X_10297857_SNP [dm3] X_10403824_SNP [dm6]	A	G	2.454e^-4	0.581	INTRON flw	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14493836	3L_14493836_SNP [dm3] 3L_14500736_SNP [dm6]	C	A	2.464e^-4	0.581	INTRON bbg
2L	19880293	2L_19880293_SNP [dm3] 2L_19880293_SNP [dm6]	A	T	2.467e^-4	0.581	INTRON sick
3L	16693842	3L_16693842_SNP [dm3] 3L_16700742_SNP [dm6]	G	T	2.467e^-4	0.581	INTRON Lasp & 1 other
3R	10178765	3R_10178765_SNP [dm3] 3R_14353043_SNP [dm6]	A	C	2.469e^-4	0.581	INTRON NK7.1
2R	16565617	2R_16565617_SNP [dm3] 2R_20678112_SNP [dm6]	C	A	2.477e^-4	0.581	INTERGENIC
3R	10434881	3R_10434881_SNP [dm3] 3R_14609159_SNP [dm6]	A	G	2.483e^-4	0.581	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	17302629	2L_17302629_SNP [dm3] 2L_17302629_SNP [dm6]	G	A	2.483e^-4	0.581	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13723483	2R_13723483_SNP [dm3] 2R_17835978_SNP [dm6]	C	T	2.487e^-4	0.581	INTRON grh
2R	11576600	2R_11576600_SNP [dm3] 2R_15689095_SNP [dm6]	G	T	2.488e^-4	0.581	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2435416	2L_2435416_SNP [dm3] 2L_2435416_SNP [dm6]	A	T	2.492e^-4	0.581	INTRON dpp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	2170084	3L_2170084_SNP [dm3] 3L_2170084_SNP [dm6]	A	C	2.495e^-4	0.581	SYNONYMOUS_CODING CG5704 UPSTREAM CG15879
2R	12111030	2R_12111030_SNP [dm3] 2R_16223525_SNP [dm6]	G	A	2.503e^-4	0.581	SYNONYMOUS_CODING CG15706 UPSTREAM CG7798 DOWNSTREAM CR43898
2R	17894354	2R_17894354_SNP [dm3] 2R_22006849_SNP [dm6]	A	G	2.503e^-4	0.581	INTRON CG34370
2R	12643976	2R_12643976_SNP [dm3] 2R_16756471_SNP [dm6]	A	T	2.504e^-4	0.581	DOWNSTREAM CG5267 INTRON unc-104	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	9849309	X_9849309_SNP [dm3] X_9955276_SNP [dm6]	T	C	2.506e^-4	0.581	INTERGENIC
3R	4415773	3R_4415773_SNP [dm3] 3R_8590051_SNP [dm6]	G	T	2.507e^-4	0.581	INTRON 5-HT2B	TF binding site mE1_TFBS_cad
2L	19941028	2L_19941028_SNP [dm3] 2L_19941028_SNP [dm6]	G	A	2.509e^-4	0.581	INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5457385	3R_5457385_SNP [dm3] 3R_9631663_SNP [dm6]	C	G	2.512e^-4	0.581	UTR_5_PRIME SpdS UPSTREAM SpdS & 1 other DOWNSTREAM CR45053	TF binding site mE1_TFBS_HSA
3R	12898355	3R_12898355_SNP [dm3] 3R_17072633_SNP [dm6]	A	G	2.517e^-4	0.581	UTR_5_PRIME Ns1 UPSTREAM mRpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13315113	2L_13315113_SNP [dm3] 2L_13315113_SNP [dm6]	A	G	2.517e^-4	0.581	INTRON CG43778
2L	6534172	2L_6534172_SNP [dm3] 2L_6534172_SNP [dm6]	C	T	2.518e^-4	0.581	INTRON eya	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	7622393	X_7622393_SNP [dm3] X_7728360_SNP [dm6]	C	G	2.518e^-4	0.581	UTR_5_PRIME NELF-B UPSTREAM CG12155	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4391241	3L_4391241_SNP [dm3] 3L_4391241_SNP [dm6]	A	T	2.525e^-4	0.581	INTRON slow	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	5449718	3R_5449718_SNP [dm3] 3R_9623996_SNP [dm6]	G	C	2.526e^-4	0.581	SYNONYMOUS_CODING CG8312	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17403840	X_17403840_SNP [dm3] X_17509807_SNP [dm6]	T	A	2.527e^-4	0.581	INTRON CG43658	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA
2L	19930981	2L_19930981_SNP [dm3] 2L_19930981_SNP [dm6]	A	G	2.527e^-4	0.581	INTRON sick
3R	15101552	3R_15101552_SNP [dm3] 3R_19275830_SNP [dm6]	C	T	2.529e^-4	0.581	INTERGENIC
2L	18813039	2L_18813039_SNP [dm3] 2L_18813039_SNP [dm6]	T	A	2.533e^-4	0.581	UTR_5_PRIME CG42305 & 1 other
2L	15998543	2L_15998543_SNP [dm3] 2L_15998543_SNP [dm6]	T	C	2.539e^-4	0.581	INTERGENIC
3L	2170090	3L_2170090_SNP [dm3] 3L_2170090_SNP [dm6]	A	G	2.545e^-4	0.581	SYNONYMOUS_CODING CG5704 UPSTREAM CG15879
3L	20611534	3L_20611534_SNP [dm3] 3L_20618434_SNP [dm6]	A	T	2.546e^-4	0.581	INTRON knrl
X	20262315	X_20262315_DEL [dm3] X_20391288_DEL [dm6]	TGATGTTTCTTAT...	T	2.549e^-4	0.581	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19522673	2R_19522673_SNP [dm3] 2R_23635150_SNP [dm6]	G	T	2.555e^-4	0.581	INTRON retn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	2645281	2L_2645281_SNP [dm3] 2L_2645281_SNP [dm6]	C	A	2.560e^-4	0.581	UPSTREAM CR43852 INTERGENIC
3R	25273294	3R_25273294_SNP [dm3] 3R_29447572_SNP [dm6]	T	C	2.562e^-4	0.581	INTRON Ptp99A
3R	22109362	3R_22109362_SNP [dm3] 3R_26283640_SNP [dm6]	G	A	2.564e^-4	0.581	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	9849341	X_9849341_SNP [dm3] X_9955308_SNP [dm6]	C	T	2.566e^-4	0.581	INTERGENIC
2L	5413156	2L_5413156_SNP [dm3] 2L_5413156_SNP [dm6]	A	G	2.568e^-4	0.581	SYNONYMOUS_CODING H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6688177	3L_6688177_SNP [dm3] 3L_6695077_SNP [dm6]	G	C	2.572e^-4	0.581	INTRON SP1173
3R	26478928	3R_26478928_SNP [dm3] 3R_30653206_SNP [dm6]	G	T	2.575e^-4	0.581	INTERGENIC
3R	14771286	3R_14771286_SNP [dm3] 3R_18945564_SNP [dm6]	T	C	2.580e^-4	0.581	INTRON CG42613
X	8922480	X_8922480_SNP [dm3] X_9028447_SNP [dm6]	C	T	2.582e^-4	0.581	UTR_3_PRIME rdgA DOWNSTREAM rdgA INTRON CR43836
2R	11809811	2R_11809811_SNP [dm3] 2R_15922306_SNP [dm6]	T	C	2.590e^-4	0.581	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
3R	12800193	3R_12800193_SNP [dm3] 3R_16974471_SNP [dm6]	A	T	2.599e^-4	0.581	UPSTREAM VhaM9.7-d INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	7622623	X_7622623_SNP [dm3] X_7728590_SNP [dm6]	G	A	2.603e^-4	0.581	UPSTREAM CG12155 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	466196	3L_466196_SNP [dm3] 3L_466196_SNP [dm6]	A	G	2.604e^-4	0.581	INTRON klar
X	892036	X_892036_SNP [dm3] X_998003_SNP [dm6]	T	A	2.605e^-4	0.581	INTERGENIC
3R	21538533	3R_21538533_SNP [dm3] 3R_25712811_SNP [dm6]	A	T	2.616e^-4	0.581	INTRON LpR2
3L	4129297	3L_4129297_SNP [dm3] 3L_4129297_SNP [dm6]	G	T	2.617e^-4	0.581	INTRON ens
X	20880894	X_20880894_SNP [dm3] X_21009867_SNP [dm6]	A	C	2.618e^-4	0.581	INTERGENIC
3R	10193904	3R_10193904_SNP [dm3] 3R_14368182_SNP [dm6]	A	G	2.621e^-4	0.581	INTRON NK7.1
3R	5448596	3R_5448596_SNP [dm3] 3R_9622874_SNP [dm6]	A	G	2.624e^-4	0.581	UPSTREAM CG8312 INTRON CG8312	TF binding site mE1_TFBS_cad
3R	4341214	3R_4341214_SNP [dm3] 3R_8515492_SNP [dm6]	T	C	2.624e^-4	0.581	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	19946219	2L_19946219_SNP [dm3] 2L_19946219_SNP [dm6]	C	G	2.625e^-4	0.581	SYNONYMOUS_CODING sick INTRON sick	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9089164	2L_9089164_SNP [dm3] 2L_9089164_SNP [dm6]	C	T	2.625e^-4	0.581	SYNONYMOUS_CODING Toll-4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4242397	3L_4242397_SNP [dm3] 3L_4242397_SNP [dm6]	C	T	2.628e^-4	0.581	SYNONYMOUS_CODING CG14997 UPSTREAM pav	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	2435400	2L_2435400_DEL [dm3] 2L_2435400_DEL [dm6]	AA	A	2.629e^-4	0.581	INTRON dpp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	2435410	2L_2435410_MNP [dm3] 2L_2435410_MNP [dm6]	AATG	CTGA	2.629e^-4	0.581	INTRON dpp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	4950454	2R_4950454_SNP [dm3] 2R_9062949_SNP [dm6]	G	A	2.634e^-4	0.581	INTRON ana	regulatory region REDfly_CRMs
3L	413912	3L_413912_SNP [dm3] 3L_413912_SNP [dm6]	C	T	2.635e^-4	0.581	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	4424335	2L_4424335_SNP [dm3] 2L_4424335_SNP [dm6]	A	G	2.635e^-4	0.581	INTRON CG15431
2R	8673575	2R_8673575_SNP [dm3] 2R_12786070_SNP [dm6]	G	A	2.642e^-4	0.582	INTRON sca EXON CR45137	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4737909	3L_4737909_SNP [dm3] 3L_4737909_SNP [dm6]	G	A	2.645e^-4	0.582	INTRON RhoGEF64C
X	8247179	X_8247179_SNP [dm3] X_8353146_SNP [dm6]	A	C	2.648e^-4	0.582	INTRON nAChRalpha3
3R	5445791	3R_5445791_DEL [dm3] 3R_9620069_DEL [dm6]	AAACAAACTCAAA...	A	2.650e^-4	0.582	INTRON CG8312
2L	15132192	2L_15132192_SNP [dm3] 2L_15132192_SNP [dm6]	T	A	2.660e^-4	0.582	DOWNSTREAM tRNA:L:35C INTERGENIC
3L	4011471	3L_4011471_SNP [dm3] 3L_4011471_SNP [dm6]	A	C	2.670e^-4	0.582	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2435385	2L_2435385_SNP [dm3] 2L_2435385_SNP [dm6]	A	T	2.672e^-4	0.582	INTRON dpp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	3874445	3L_3874445_SNP [dm3] 3L_3874445_SNP [dm6]	T	G	2.676e^-4	0.582	INTERGENIC
3L	9515098	3L_9515098_SNP [dm3] 3L_9521998_SNP [dm6]	A	G	2.677e^-4	0.582	INTRON CG33700
2R	10096977	2R_10096977_SNP [dm3] 2R_14209472_SNP [dm6]	C	T	2.678e^-4	0.582	INTRON Sox15	regulatory region REDfly_CRMs
2R	9906495	2R_9906495_SNP [dm3] 2R_14018990_SNP [dm6]	C	T	2.682e^-4	0.582	INTRON mam
X	5651981	X_5651981_SNP [dm3] X_5757948_SNP [dm6]	C	T	2.685e^-4	0.582	SYNONYMOUS_CODING CG15771 START_GAINED CG15771 UTR_5_PRIME CG15771	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2435405	2L_2435405_SNP [dm3] 2L_2435405_SNP [dm6]	C	A	2.685e^-4	0.582	INTRON dpp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	14049467	2R_14049467_SNP [dm3] 2R_18161962_SNP [dm6]	G	A	2.686e^-4	0.582	SYNONYMOUS_CODING CG10915
3L	15067015	3L_15067015_SNP [dm3] 3L_15073915_SNP [dm6]	C	G	2.686e^-4	0.582	INTRON cp309
X	20566697	X_20566697_SNP [dm3] X_20695670_SNP [dm6]	T	C	2.687e^-4	0.582	INTRON run	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7549517	3L_7549517_SNP [dm3] 3L_7556417_SNP [dm6]	G	A	2.701e^-4	0.584	SYNONYMOUS_CODING CG14837	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5456944	2L_5456944_SNP [dm3] 2L_5456944_SNP [dm6]	G	A	2.714e^-4	0.586	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	653578	2L_653578_SNP [dm3] 2L_653578_SNP [dm6]	A	G	2.718e^-4	0.586	INTRON ds
3R	12970255	3R_12970255_SNP [dm3] 3R_17144533_SNP [dm6]	T	A	2.723e^-4	0.587	UTR_3_PRIME m-cup DOWNSTREAM m-cup
3R	24634354	3R_24634354_SNP [dm3] 3R_28808632_SNP [dm6]	T	C	2.730e^-4	0.587	SYNONYMOUS_CODING wdn	TF binding site mE1_TFBS_cad
3L	7483815	3L_7483815_SNP [dm3] 3L_7490715_SNP [dm6]	G	T	2.735e^-4	0.587	INTERGENIC
2R	12203325	2R_12203325_SNP [dm3] 2R_16315820_SNP [dm6]	T	A	2.736e^-4	0.587	DOWNSTREAM CG8060 INTRON Nox	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	411916	3L_411916_SNP [dm3] 3L_411916_SNP [dm6]	A	G	2.740e^-4	0.587	INTERGENIC
2L	2519688	2L_2519688_SNP [dm3] 2L_2519688_SNP [dm6]	G	A	2.744e^-4	0.587	INTERGENIC
2L	19898638	2L_19898638_SNP [dm3] 2L_19898638_SNP [dm6]	G	A	2.745e^-4	0.587	INTRON sick
3L	16905534	3L_16905534_SNP [dm3] 3L_16912434_SNP [dm6]	T	A	2.750e^-4	0.587	INTRON Lmpt
3L	12257016	3L_12257016_SNP [dm3] 3L_12263916_SNP [dm6]	G	A	2.751e^-4	0.587	INTRON app
2R	14550782	2R_14550782_SNP [dm3] 2R_18663277_SNP [dm6]	C	A	2.754e^-4	0.587	INTERGENIC
3L	9722004	3L_9722004_SNP [dm3] 3L_9728904_SNP [dm6]	A	C	2.756e^-4	0.587	UTR_3_PRIME Naa60 DOWNSTREAM Naa60
2L	20300823	2L_20300823_SNP [dm3] 2L_20300823_SNP [dm6]	C	T	2.757e^-4	0.587	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	9128381	2R_9128381_SNP [dm3] 2R_13240876_SNP [dm6]	G	T	2.762e^-4	0.587	UTR_3_PRIME GstE14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19890126	2L_19890126_SNP [dm3] 2L_19890126_SNP [dm6]	T	G	2.765e^-4	0.587	DOWNSTREAM CG10481 INTRON sick
X	4729666	X_4729666_SNP [dm3] X_4835633_SNP [dm6]	C	G	2.767e^-4	0.587	INTERGENIC
X	14157477	X_14157477_SNP [dm3] X_14263444_SNP [dm6]	A	G	2.772e^-4	0.587	SPLICE_SITE_REGION CG1461 INTRON CG1461
2L	3124306	2L_3124306_SNP [dm3] 2L_3124306_SNP [dm6]	A	G	2.785e^-4	0.589	NON_SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_chinmo
3L	5982580	3L_5982580_SNP [dm3] 3L_5989480_SNP [dm6]	T	A	2.790e^-4	0.589	INTERGENIC
X	20215435	X_20215435_SNP [dm3] X_20344408_SNP [dm6]	G	A	2.792e^-4	0.589	INTERGENIC
3R	15894772	3R_15894772_DEL [dm3] 3R_20069050_DEL [dm6]	GG	A	2.793e^-4	0.589	INTERGENIC
X	20451564	X_20451564_DEL [dm3] X_20580537_DEL [dm6]	TGTTTTAGCATT...	T	2.799e^-4	0.59	INTERGENIC
2L	2766398	2L_2766398_SNP [dm3] 2L_2766398_SNP [dm6]	T	C	2.804e^-4	0.59	SYNONYMOUS_CODING aph-1 UPSTREAM CG3077 DOWNSTREAM Taf10b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	4349607	3R_4349607_SNP [dm3] 3R_8523885_SNP [dm6]	G	A	2.814e^-4	0.591	UPSTREAM CG31259 DOWNSTREAM CG31454 INTERGENIC
3L	3775947	3L_3775947_SNP [dm3] 3L_3775947_SNP [dm6]	T	A	2.820e^-4	0.591	INTRON CG32264
2L	606460	2L_606460_SNP [dm3] 2L_606460_SNP [dm6]	T	C	2.822e^-4	0.591	DOWNSTREAM CR43648 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7256496	2R_7256496_SNP [dm3] 2R_11368991_SNP [dm6]	G	A	2.822e^-4	0.591	SYNONYMOUS_CODING CG13204	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15292564	3R_15292564_SNP [dm3] 3R_19466842_SNP [dm6]	T	C	2.834e^-4	0.592	INTRON Dys
3R	4345051	3R_4345051_SNP [dm3] 3R_8519329_SNP [dm6]	A	T	2.834e^-4	0.592	INTRON CG11737
3R	4415784	3R_4415784_SNP [dm3] 3R_8590062_SNP [dm6]	C	T	2.837e^-4	0.592	INTRON 5-HT2B	TF binding site mE1_TFBS_cad
3R	4415796	3R_4415796_SNP [dm3] 3R_8590074_SNP [dm6]	C	A	2.837e^-4	0.592	INTRON 5-HT2B	TF binding site mE1_TFBS_cad
2R	18817694	2R_18817694_SNP [dm3] 2R_22930171_SNP [dm6]	A	G	2.845e^-4	0.592	DOWNSTREAM CG42678 INTRON CG42678	TF binding site mE1_TFBS_inv
3L	9352113	3L_9352113_SNP [dm3] 3L_9359013_SNP [dm6]	A	G	2.847e^-4	0.592	UTR_5_PRIME CG32039 UPSTREAM UGP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	17032033	3R_17032033_SNP [dm3] 3R_21206311_SNP [dm6]	C	T	2.847e^-4	0.592	INTRON SNF4Agamma	TF binding site mE1_TFBS_Trl
2R	18918736	2R_18918736_SNP [dm3] 2R_23031213_SNP [dm6]	T	C	2.851e^-4	0.592	INTRON twi & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4737951	3L_4737951_SNP [dm3] 3L_4737951_SNP [dm6]	C	A	2.862e^-4	0.594	INTRON RhoGEF64C
2R	3603547	2R_3603547_SNP [dm3] 2R_7716042_SNP [dm6]	T	G	2.877e^-4	0.595	NON_SYNONYMOUS_CODING CG1946 DOWNSTREAM CG18812	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13547315	3L_13547315_SNP [dm3] 3L_13554215_SNP [dm6]	C	T	2.879e^-4	0.595	INTRON bru-3
2L	5692674	2L_5692674_SNP [dm3] 2L_5692674_SNP [dm6]	T	A	2.891e^-4	0.595	DOWNSTREAM CR44819 INTERGENIC
3R	4637056	3R_4637056_SNP [dm3] 3R_8811334_SNP [dm6]	G	A	2.896e^-4	0.595	INTRON CG9837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18496192	2R_18496192_SNP [dm3] 2R_22608687_SNP [dm6]	T	C	2.898e^-4	0.595	SYNONYMOUS_CODING Vps20 DOWNSTREAM RpS16 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10807182	3R_10807182_INS [dm3] 3R_14981460_INS [dm6]	A	ATCGTATCCTAAGA...	2.908e^-4	0.595	INTERGENIC
2L	20337743	2L_20337743_SNP [dm3] 2L_20337743_SNP [dm6]	C	A	2.910e^-4	0.595	INTRON spir
3L	20198791	3L_20198791_SNP [dm3] 3L_20205691_SNP [dm6]	C	T	2.911e^-4	0.595	SYNONYMOUS_CODING CG7290	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16202254	3L_16202254_SNP [dm3] 3L_16209154_SNP [dm6]	C	T	2.912e^-4	0.595	INTERGENIC	TF binding site mE1_TFBS_cad
3R	8102698	3R_8102698_SNP [dm3] 3R_12276976_SNP [dm6]	C	G	2.915e^-4	0.595	INTRON svp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	991995	3R_991995_SNP [dm3] 3R_5166273_SNP [dm6]	T	C	2.915e^-4	0.595	NON_SYNONYMOUS_CODING dpr16	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18626744	3L_18626744_SNP [dm3] 3L_18633644_SNP [dm6]	G	T	2.918e^-4	0.595	INTRON MYPT-75D
3R	25810683	3R_25810683_SNP [dm3] 3R_29984961_SNP [dm6]	A	T	2.924e^-4	0.595	INTRON CG7896
3R	25810685	3R_25810685_SNP [dm3] 3R_29984963_SNP [dm6]	T	C	2.924e^-4	0.595	INTRON CG7896
2L	2435479	2L_2435479_SNP [dm3] 2L_2435479_SNP [dm6]	T	C	2.931e^-4	0.595	INTRON dpp	TF binding site mE1_TFBS_cnc
3L	7042389	3L_7042389_SNP [dm3] 3L_7049289_SNP [dm6]	T	C	2.932e^-4	0.595	INTRON Mp
2R	14270956	2R_14270956_DEL [dm3] 2R_18383451_DEL [dm6]	ATTTTT	A	2.932e^-4	0.595	UPSTREAM IM1 & 1 other INTERGENIC
3L	17193362	3L_17193362_SNP [dm3] 3L_17200262_SNP [dm6]	G	T	2.933e^-4	0.595	INTRON Rbp6
2L	5883903	2L_5883903_SNP [dm3] 2L_5883903_SNP [dm6]	A	G	2.934e^-4	0.595	NON_SYNONYMOUS_CODING CG44574 UPSTREAM CG43185 DOWNSTREAM Sfp26Ac
3L	4556696	3L_4556696_SNP [dm3] 3L_4556696_SNP [dm6]	T	A	2.939e^-4	0.595	UPSTREAM CG42540 INTRON CG42540
3R	21776763	3R_21776763_SNP [dm3] 3R_25951041_SNP [dm6]	T	G	2.940e^-4	0.595	INTRON CCAP-R	TF binding site mE1_TFBS_inv
3L	3187073	3L_3187073_SNP [dm3] 3L_3187073_SNP [dm6]	A	C	2.945e^-4	0.595	NON_SYNONYMOUS_CODING CG32284 UPSTREAM CG14957 DOWNSTREAM CG42494 & 1 other
3R	25273275	3R_25273275_SNP [dm3] 3R_29447553_SNP [dm6]	C	T	2.947e^-4	0.595	INTRON Ptp99A
2L	8450856	2L_8450856_SNP [dm3] 2L_8450856_SNP [dm6]	A	C	2.952e^-4	0.595	SYNONYMOUS_CODING fu12
3L	4056871	3L_4056871_SNP [dm3] 3L_4056871_SNP [dm6]	A	G	2.957e^-4	0.595	INTRON CG1136	TF binding site mE1_TFBS_cad
2L	19123042	2L_19123042_SNP [dm3] 2L_19123042_SNP [dm6]	C	T	2.959e^-4	0.595	DOWNSTREAM l_2_37Cb INTRON l_2_37Cc
X	8246042	X_8246042_DEL [dm3] X_8352009_DEL [dm6]	ACA	A	2.960e^-4	0.595	INTRON nAChRalpha3
2L	15132198	2L_15132198_SNP [dm3] 2L_15132198_SNP [dm6]	A	T	2.966e^-4	0.595	DOWNSTREAM tRNA:L:35C INTERGENIC
3R	18780271	3R_18780271_SNP [dm3] 3R_22954549_SNP [dm6]	G	A	2.969e^-4	0.595	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	6462979	3L_6462979_SNP [dm3] 3L_6469879_SNP [dm6]	T	A	2.970e^-4	0.595	INTRON CG42747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	19930978	2L_19930978_SNP [dm3] 2L_19930978_SNP [dm6]	G	T	2.971e^-4	0.595	INTRON sick
3L	1857653	3L_1857653_SNP [dm3] 3L_1857653_SNP [dm6]	C	T	2.975e^-4	0.595	SYNONYMOUS_CODING CG12024	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7130558	2R_7130558_SNP [dm3] 2R_11243053_SNP [dm6]	C	A	2.977e^-4	0.595	UPSTREAM Listericin INTERGENIC
3L	1858016	3L_1858016_SNP [dm3] 3L_1858016_SNP [dm6]	A	G	2.979e^-4	0.595	SYNONYMOUS_CODING CG12024	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5756043	2L_5756043_SNP [dm3] 2L_5756043_SNP [dm6]	T	A	2.993e^-4	0.595	INTRON CG11030
2L	3245320	2L_3245320_SNP [dm3] 2L_3245320_SNP [dm6]	T	C	2.994e^-4	0.595	INTERGENIC
2L	17279672	2L_17279672_SNP [dm3] 2L_17279672_SNP [dm6]	C	T	2.995e^-4	0.595	UPSTREAM CR45729 INTERGENIC
X	6203178	X_6203178_SNP [dm3] X_6309145_SNP [dm6]	G	A	3.004e^-4	0.595	UPSTREAM CG15894 INTERGENIC
2L	19123030	2L_19123030_SNP [dm3] 2L_19123030_SNP [dm6]	A	T	3.008e^-4	0.595	DOWNSTREAM l_2_37Cb INTRON l_2_37Cc
2R	12280825	2R_12280825_SNP [dm3] 2R_16393320_SNP [dm6]	G	T	3.009e^-4	0.595	INTRON Sema-2b
3L	6688251	3L_6688251_INS [dm3] 3L_6695151_INS [dm6]	G	GACGGCTTTGCCG...	3.012e^-4	0.595	INTRON SP1173
2L	16135128	2L_16135128_SNP [dm3] 2L_16135128_SNP [dm6]	T	A	3.016e^-4	0.595	DOWNSTREAM CR44871 & 1 other INTRON CG34168
2R	14671861	2R_14671861_SNP [dm3] 2R_18784356_SNP [dm6]	T	A	3.017e^-4	0.595	INTRON CG15080	enhancer mE1_CBP_Enhancers
2L	17285979	2L_17285979_SNP [dm3] 2L_17285979_SNP [dm6]	A	T	3.021e^-4	0.595	UPSTREAM CG15140 INTERGENIC	TF binding site mE1_TFBS_inv
2L	9467640	2L_9467640_SNP [dm3] 2L_9467640_SNP [dm6]	C	T	3.025e^-4	0.595	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12389779	2R_12389779_SNP [dm3] 2R_16502274_SNP [dm6]	A	G	3.025e^-4	0.595	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	2435538	2L_2435538_SNP [dm3] 2L_2435538_SNP [dm6]	T	C	3.037e^-4	0.595	INTRON dpp	TF binding site mE1_TFBS_cnc
2L	2435552	2L_2435552_MNP [dm3] 2L_2435552_MNP [dm6]	CAA	TTG	3.037e^-4	0.595	INTRON dpp	TF binding site mE1_TFBS_cnc
3L	4238771	3L_4238771_SNP [dm3] 3L_4238771_SNP [dm6]	G	T	3.049e^-4	0.595	INTERGENIC
2L	696649	2L_696649_SNP [dm3] 2L_696649_SNP [dm6]	T	A	3.049e^-4	0.595	INTRON ds	TF binding site mE1_TFBS_Trl
X	11320937	X_11320937_SNP [dm3] X_11426904_SNP [dm6]	G	C	3.051e^-4	0.595	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17032035	3R_17032035_SNP [dm3] 3R_21206313_SNP [dm6]	G	A	3.052e^-4	0.595	INTRON SNF4Agamma	TF binding site mE1_TFBS_Trl
2L	702511	2L_702511_SNP [dm3] 2L_702511_SNP [dm6]	G	A	3.053e^-4	0.595	INTRON ds	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	16665687	3L_16665687_SNP [dm3] 3L_16672587_SNP [dm6]	T	C	3.054e^-4	0.595	INTRON zetaCOP
3L	1736275	3L_1736275_SNP [dm3] 3L_1736275_SNP [dm6]	T	C	3.055e^-4	0.595	NON_SYNONYMOUS_CODING CG18173 UPSTREAM Oseg4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22141543	3R_22141543_SNP [dm3] 3R_26315821_SNP [dm6]	T	A	3.055e^-4	0.595	INTERGENIC
X	14904027	X_14904027_SNP [dm3] X_15009994_SNP [dm6]	A	T	3.055e^-4	0.595	DOWNSTREAM hiw & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1564511	3L_1564511_SNP [dm3] 3L_1564511_SNP [dm6]	A	G	3.060e^-4	0.595	UPSTREAM CG12003 INTRON CG7879
2R	17904059	2R_17904059_SNP [dm3] 2R_22016554_SNP [dm6]	A	T	3.074e^-4	0.595	INTRON CG34370
2L	10565655	2L_10565655_SNP [dm3] 2L_10565655_SNP [dm6]	G	C	3.074e^-4	0.595	INTRON Trim9
2L	19890124	2L_19890124_SNP [dm3] 2L_19890124_SNP [dm6]	T	G	3.080e^-4	0.595	DOWNSTREAM CG10481 INTRON sick
X	14803294	X_14803294_SNP [dm3] X_14909261_SNP [dm6]	A	G	3.081e^-4	0.595	UTR_5_PRIME CG9509 UPSTREAM CG9509 DOWNSTREAM CG14406 INTRON Flo2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	14435700	3L_14435700_SNP [dm3] 3L_14442600_SNP [dm6]	G	T	3.081e^-4	0.595	INTRON bbg
3L	7071913	3L_7071913_SNP [dm3] 3L_7078813_SNP [dm6]	A	C	3.084e^-4	0.595	INTERGENIC
3R	5449070	3R_5449070_SNP [dm3] 3R_9623348_SNP [dm6]	G	A	3.095e^-4	0.595	SYNONYMOUS_CODING CG8312	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26659826	3R_26659826_SNP [dm3] 3R_30834104_SNP [dm6]	A	C	3.095e^-4	0.595	INTRON CG15544
3L	17891621	3L_17891621_SNP [dm3] 3L_17898521_SNP [dm6]	T	C	3.098e^-4	0.595	DOWNSTREAM Prestin INTERGENIC
2R	13506075	2R_13506075_SNP [dm3] 2R_17618570_SNP [dm6]	T	G	3.102e^-4	0.595	UPSTREAM CG44403 INTRON CG10936
3L	9483249	3L_9483249_SNP [dm3] 3L_9490149_SNP [dm6]	G	T	3.104e^-4	0.595	UTR_3_PRIME CG32037 UPSTREAM CG32036	TF binding site mE1_TFBS_cad
3R	22781944	3R_22781944_SNP [dm3] 3R_26956222_SNP [dm6]	C	A	3.109e^-4	0.595	INTRON CG6330	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3L	12792069	3L_12792069_SNP [dm3] 3L_12798969_SNP [dm6]	G	A	3.114e^-4	0.595	INTRON Atg1
2L	18207614	2L_18207614_DEL [dm3] 2L_18207614_DEL [dm6]	TC	T	3.114e^-4	0.595	DOWNSTREAM CG31802 INTRON CG42750
2L	19841857	2L_19841857_SNP [dm3] 2L_19841857_SNP [dm6]	T	C	3.116e^-4	0.595	INTRON sick
3R	26183671	3R_26183671_SNP [dm3] 3R_30357949_SNP [dm6]	G	A	3.117e^-4	0.595	UTR_5_PRIME hdc INTRON hdc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8004939	X_8004939_SNP [dm3] X_8110906_SNP [dm6]	G	A	3.123e^-4	0.595	INTRON Gclc
3L	11922558	3L_11922558_SNP [dm3] 3L_11929458_SNP [dm6]	G	C	3.127e^-4	0.595	INTRON CG44837 & 1 other
3R	5456315	3R_5456315_SNP [dm3] 3R_9630593_SNP [dm6]	A	T	3.131e^-4	0.595	INTRON Crc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	2767520	2L_2767520_SNP [dm3] 2L_2767520_SNP [dm6]	C	T	3.132e^-4	0.595	SYNONYMOUS_CODING Taf10b UPSTREAM Taf10 DOWNSTREAM aph-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	763243	2L_763243_SNP [dm3] 2L_763243_SNP [dm6]	A	G	3.135e^-4	0.595	DOWNSTREAM GABA-B-R3 INTERGENIC
2L	15593926	2L_15593926_SNP [dm3] 2L_15593926_SNP [dm6]	G	A	3.136e^-4	0.595	INTERGENIC
2R	11735845	2R_11735845_SNP [dm3] 2R_15848340_SNP [dm6]	T	C	3.137e^-4	0.595	UPSTREAM CG8249 & 1 other INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1
3L	18640926	3L_18640926_SNP [dm3] 3L_18647826_SNP [dm6]	G	A	3.138e^-4	0.595	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_twi
3L	1857609	3L_1857609_SNP [dm3] 3L_1857609_SNP [dm6]	A	G	3.141e^-4	0.595	NON_SYNONYMOUS_CODING CG12024	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22780339	3R_22780339_SNP [dm3] 3R_26954617_SNP [dm6]	T	C	3.142e^-4	0.595	INTRON CG6330	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1565411	3L_1565411_SNP [dm3] 3L_1565411_SNP [dm6]	C	T	3.148e^-4	0.595	START_GAINED CG12003 UTR_5_PRIME CG12003 INTRON CG7879	TF binding site mE1_TFBS_sens
3L	16724896	3L_16724896_SNP [dm3] 3L_16731796_SNP [dm6]	A	G	3.150e^-4	0.595	UPSTREAM Dbp73D INTERGENIC	TF binding site mE1_TFBS_HSA
2R	8673583	2R_8673583_SNP [dm3] 2R_12786078_SNP [dm6]	G	A	3.153e^-4	0.595	INTRON sca EXON CR45137	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7481577	3L_7481577_SNP [dm3] 3L_7488477_SNP [dm6]	A	T	3.156e^-4	0.595	DOWNSTREAM mthl6 INTERGENIC
3L	4712167	3L_4712167_SNP [dm3] 3L_4712167_SNP [dm6]	G	A	3.156e^-4	0.595	INTRON RhoGEF64C
3L	18688290	3L_18688290_SNP [dm3] 3L_18695190_SNP [dm6]	C	G	3.157e^-4	0.595	INTRON CG6893
2R	9880313	2R_9880313_DEL [dm3] 2R_13992808_DEL [dm6]	TT	T	3.168e^-4	0.596	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	9485810	3L_9485810_SNP [dm3] 3L_9492710_SNP [dm6]	G	A	3.170e^-4	0.596	UPSTREAM CG32037 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6511556	2L_6511556_SNP [dm3] 2L_6511556_SNP [dm6]	T	C	3.171e^-4	0.596	INTRON CG31637
X	7617605	X_7617605_SNP [dm3] X_7723572_SNP [dm6]	A	T	3.183e^-4	0.598	NON_SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	4004096	3L_4004096_SNP [dm3] 3L_4004096_SNP [dm6]	G	T	3.191e^-4	0.598	INTRON CG14985
3L	13553816	3L_13553816_DEL [dm3] 3L_13560716_DEL [dm6]	GTCGACGTAGCGACACT...	G	3.191e^-4	0.598	INTRON bru-3

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.059e^-2)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.06554

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	5.3486	0.069
In_3R_Mo	5.6662	0.0588

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2478 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	1.984e^-7	0.372	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3437649	2L_3437649_SNP [dm3] 2L_3437649_SNP [dm6]	A	T	1.013e^-6	0.564	INTERGENIC
3R	27128046	3R_27128046_SNP [dm3] 3R_31302324_SNP [dm6]	C	T	1.638e^-6	0.564	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_inv
2L	1239660	2L_1239660_SNP [dm3] 2L_1239660_SNP [dm6]	G	A	1.862e^-6	0.564	UPSTREAM CG5397 INTERGENIC
3R	24829701	3R_24829701_SNP [dm3] 3R_29003979_SNP [dm6]	C	G	2.654e^-6	0.564	INTRON wat
3R	26618541	3R_26618541_SNP [dm3] 3R_30792819_SNP [dm6]	A	G	2.678e^-6	0.564	SYNONYMOUS_CODING wts	TF binding site mE1_TFBS_chinmo
X	21063578	X_21063578_SNP [dm3] X_21192551_SNP [dm6]	G	A	3.276e^-6	0.564	UPSTREAM CG14579 INTERGENIC
3L	3910709	3L_3910709_SNP [dm3] 3L_3910709_SNP [dm6]	G	T	3.340e^-6	0.564	UTR_3_PRIME Eip63F-1 UPSTREAM mge DOWNSTREAM Eip63F-1
X	21160839	X_21160839_SNP [dm3] X_21289812_SNP [dm6]	T	C	3.431e^-6	0.564	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13600672	3R_13600672_SNP [dm3] 3R_17774950_SNP [dm6]	C	T	3.501e^-6	0.564	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10785598	2L_10785598_SNP [dm3] 2L_10785598_SNP [dm6]	A	T	3.785e^-6	0.564	INTRON CG31869 EXON CR44582
3L	712348	3L_712348_SNP [dm3] 3L_712348_SNP [dm6]	G	T	3.883e^-6	0.564	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	15293702	3R_15293702_SNP [dm3] 3R_19467980_SNP [dm6]	T	A	3.917e^-6	0.564	INTRON Dys
3L	712384	3L_712384_SNP [dm3] 3L_712384_SNP [dm6]	T	C	4.527e^-6	0.564	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	27127740	3R_27127740_SNP [dm3] 3R_31302018_SNP [dm6]	G	C	4.889e^-6	0.564	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	712385	3L_712385_DEL [dm3] 3L_712385_DEL [dm6]	TA	T	5.846e^-6	0.564	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	5.876e^-6	0.564	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	12772793	X_12772793_SNP [dm3] X_12878760_SNP [dm6]	T	A	5.929e^-6	0.564	INTRON Pde9
3R	24829734	3R_24829734_SNP [dm3] 3R_29004012_SNP [dm6]	A	G	6.263e^-6	0.564	INTRON wat
3L	712376	3L_712376_SNP [dm3] 3L_712376_SNP [dm6]	G	A	7.114e^-6	0.564	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	21160844	X_21160844_SNP [dm3] X_21289817_SNP [dm6]	G	C	7.158e^-6	0.564	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27100391	3R_27100391_DEL [dm3] 3R_31274669_DEL [dm6]	AA	A	7.175e^-6	0.564	INTERGENIC
3L	18663595	3L_18663595_SNP [dm3] 3L_18670495_SNP [dm6]	T	C	7.440e^-6	0.564	SYNONYMOUS_CODING Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	4737896	3L_4737896_SNP [dm3] 3L_4737896_SNP [dm6]	G	A	7.797e^-6	0.564	INTRON RhoGEF64C
2L	4416355	2L_4416355_SNP [dm3] 2L_4416355_SNP [dm6]	C	G	8.917e^-6	0.564	INTRON CG15431
2L	15469662	2L_15469662_SNP [dm3] 2L_15469662_SNP [dm6]	A	T	8.941e^-6	0.564	UPSTREAM CR45353 INTERGENIC
2R	15296549	2R_15296549_SNP [dm3] 2R_19409044_SNP [dm6]	T	G	9.041e^-6	0.564	UTR_3_PRIME hts DOWNSTREAM hts INTRON hts
3R	15293710	3R_15293710_SNP [dm3] 3R_19467988_SNP [dm6]	A	G	9.345e^-6	0.564	INTRON Dys
X	8785031	X_8785031_SNP [dm3] X_8890998_SNP [dm6]	G	T	9.893e^-6	0.564	INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	15296567	2R_15296567_SNP [dm3] 2R_19409062_SNP [dm6]	C	T	9.930e^-6	0.564	UTR_3_PRIME hts DOWNSTREAM hts INTRON hts
3L	7479975	3L_7479975_SNP [dm3] 3L_7486875_SNP [dm6]	T	C	1.010e^-5	0.564	SYNONYMOUS_CODING mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	712235	3L_712235_SNP [dm3] 3L_712235_SNP [dm6]	C	T	1.041e^-5	0.564	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	602846	3L_602846_SNP [dm3] 3L_602846_SNP [dm6]	G	C	1.135e^-5	0.564	INTRON CG13893
3R	27125014	3R_27125014_SNP [dm3] 3R_31299292_SNP [dm6]	G	T	1.171e^-5	0.564	INTERGENIC
3L	712388	3L_712388_DEL [dm3] 3L_712388_DEL [dm6]	AAT	A	1.184e^-5	0.564	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	4737895	3L_4737895_SNP [dm3] 3L_4737895_SNP [dm6]	A	G	1.190e^-5	0.564	INTRON RhoGEF64C
2R	14678270	2R_14678270_SNP [dm3] 2R_18790765_SNP [dm6]	T	C	1.204e^-5	0.564	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27125093	3R_27125093_SNP [dm3] 3R_31299371_SNP [dm6]	G	T	1.213e^-5	0.564	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	15293787	3R_15293787_SNP [dm3] 3R_19468065_SNP [dm6]	T	A	1.247e^-5	0.564	INTRON Dys
2R	3178769	2R_3178769_SNP [dm3] 2R_7291264_SNP [dm6]	G	A	1.253e^-5	0.564	INTRON pwn	TF binding site mE1_TFBS_cad
3R	27136665	3R_27136665_SNP [dm3] 3R_31310943_SNP [dm6]	G	A	1.254e^-5	0.564	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	27125777	3R_27125777_SNP [dm3] 3R_31300055_SNP [dm6]	G	A	1.264e^-5	0.564	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	24829722	3R_24829722_SNP [dm3] 3R_29004000_SNP [dm6]	T	C	1.316e^-5	0.567	INTRON wat
3L	712377	3L_712377_SNP [dm3] 3L_712377_SNP [dm6]	A	C	1.354e^-5	0.567	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	4382182	3R_4382182_SNP [dm3] 3R_8556460_SNP [dm6]	G	A	1.362e^-5	0.567	INTERGENIC
2L	17324045	2L_17324045_SNP [dm3] 2L_17324045_SNP [dm6]	T	C	1.442e^-5	0.573	INTERGENIC
3R	26361338	3R_26361338_SNP [dm3] 3R_30535616_SNP [dm6]	C	A	1.509e^-5	0.573	INTRON tmod
3R	27136626	3R_27136626_SNP [dm3] 3R_31310904_SNP [dm6]	G	T	1.544e^-5	0.573	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	712399	3L_712399_SNP [dm3] 3L_712399_SNP [dm6]	A	T	1.565e^-5	0.573	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	14192475	2R_14192475_SNP [dm3] 2R_18304970_SNP [dm6]	T	G	1.566e^-5	0.573	UPSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	17891617	2L_17891617_SNP [dm3] 2L_17891617_SNP [dm6]	C	T	1.605e^-5	0.573	INTERGENIC
3R	13600157	3R_13600157_SNP [dm3] 3R_17774435_SNP [dm6]	T	G	1.670e^-5	0.573	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3L	4841343	3L_4841343_SNP [dm3] 3L_4841343_SNP [dm6]	A	C	1.683e^-5	0.573	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	12392713	2R_12392713_SNP [dm3] 2R_16505208_SNP [dm6]	G	A	1.729e^-5	0.573	INTRON Sema-2a
3L	4737859	3L_4737859_SNP [dm3] 3L_4737859_SNP [dm6]	A	G	1.763e^-5	0.573	INTRON RhoGEF64C
2R	19553891	2R_19553891_SNP [dm3] 2R_23666368_SNP [dm6]	C	T	1.825e^-5	0.573	UPSTREAM Pde8 INTRON Pde8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	19995744	X_19995744_SNP [dm3] X_20101711_SNP [dm6]	A	T	1.845e^-5	0.573	INTERGENIC	transposable element FlyBase
3L	4534444	3L_4534444_SNP [dm3] 3L_4534444_SNP [dm6]	C	A	1.858e^-5	0.573	INTRON CG11353
3R	15293746	3R_15293746_SNP [dm3] 3R_19468024_SNP [dm6]	A	G	1.860e^-5	0.573	INTRON Dys
3L	712501	3L_712501_SNP [dm3] 3L_712501_SNP [dm6]	C	G	1.909e^-5	0.573	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	14919578	3L_14919578_SNP [dm3] 3L_14926478_SNP [dm6]	A	G	1.955e^-5	0.573	UTR_5_PRIME DCX-EMAP INTRON DCX-EMAP
X	19995797	X_19995797_SNP [dm3] X_20101764_SNP [dm6]	C	A	1.973e^-5	0.573	INTERGENIC	transposable element FlyBase
3L	712374	3L_712374_SNP [dm3] 3L_712374_SNP [dm6]	G	C	1.982e^-5	0.573	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	12176805	3L_12176805_SNP [dm3] 3L_12183705_SNP [dm6]	T	C	2.038e^-5	0.573	DOWNSTREAM CAH2 INTERGENIC
3R	19217624	3R_19217624_SNP [dm3] 3R_23391902_SNP [dm6]	G	A	2.085e^-5	0.573	INTERGENIC
3L	22883797	3L_22883797_SNP [dm3] 3L_22890697_SNP [dm6]	A	G	2.130e^-5	0.573	INTRON slif	transposable element FlyBase
X	3599377	X_3599377_SNP [dm3] X_3705344_SNP [dm6]	G	T	2.265e^-5	0.573	UTR_3_PRIME Rala
2L	17333598	2L_17333598_SNP [dm3] 2L_17333598_SNP [dm6]	G	A	2.289e^-5	0.573	INTERGENIC
3R	25593365	3R_25593365_SNP [dm3] 3R_29767643_SNP [dm6]	C	A	2.309e^-5	0.573	INTRON kay	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	13950559	2R_13950559_SNP [dm3] 2R_18063054_SNP [dm6]	A	T	2.327e^-5	0.573	INTRON CG34386
2R	19553962	2R_19553962_SNP [dm3] 2R_23666439_SNP [dm6]	G	A	2.378e^-5	0.573	UPSTREAM Pde8 INTRON Pde8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	2926031	X_2926031_SNP [dm3] X_3031998_SNP [dm6]	C	A	2.404e^-5	0.573	INTRON kirre
2L	15469667	2L_15469667_SNP [dm3] 2L_15469667_SNP [dm6]	T	G	2.430e^-5	0.573	UPSTREAM CR45353 INTERGENIC
3R	27136505	3R_27136505_SNP [dm3] 3R_31310783_SNP [dm6]	T	A	2.432e^-5	0.573	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	12971257	3R_12971257_SNP [dm3] 3R_17145535_SNP [dm6]	A	C	2.465e^-5	0.573	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3R	12971260	3R_12971260_DEL [dm3] 3R_17145538_DEL [dm6]	AGGTAAGCATCCTA...	G	2.465e^-5	0.573	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
X	3035763	X_3035763_DEL [dm3] X_3141730_DEL [dm6]	GG	G	2.476e^-5	0.573	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	588349	2L_588349_SNP [dm3] 2L_588349_SNP [dm6]	T	C	2.483e^-5	0.573	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	589172	2L_589172_SNP [dm3] 2L_589172_SNP [dm6]	C	T	2.515e^-5	0.573	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
3R	4487071	3R_4487071_SNP [dm3] 3R_8661349_SNP [dm6]	T	C	2.517e^-5	0.573	NON_SYNONYMOUS_CODING p UPSTREAM bel
3L	15757470	3L_15757470_SNP [dm3] 3L_15764370_SNP [dm6]	G	A	2.524e^-5	0.573	INTERGENIC
3L	712226	3L_712226_SNP [dm3] 3L_712226_SNP [dm6]	C	A	2.533e^-5	0.573	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
X	14154319	X_14154319_SNP [dm3] X_14260286_SNP [dm6]	G	C	2.542e^-5	0.573	UPSTREAM CG1461 INTERGENIC
X	3035757	X_3035757_SNP [dm3] X_3141724_SNP [dm6]	A	T	2.584e^-5	0.573	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	4238728	3L_4238728_SNP [dm3] 3L_4238728_SNP [dm6]	A	T	2.600e^-5	0.573	INTERGENIC
3L	9485810	3L_9485810_SNP [dm3] 3L_9492710_SNP [dm6]	G	A	2.693e^-5	0.583	UPSTREAM CG32037 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7369219	3L_7369219_SNP [dm3] 3L_7376119_SNP [dm6]	G	C	2.767e^-5	0.583	INTRON SMSr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	14919557	3L_14919557_SNP [dm3] 3L_14926457_SNP [dm6]	T	G	2.815e^-5	0.583	UTR_5_PRIME DCX-EMAP INTRON DCX-EMAP	TF binding site mE1_TFBS_cad
3L	712423	3L_712423_SNP [dm3] 3L_712423_SNP [dm6]	G	C	2.820e^-5	0.583	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	4238717	3L_4238717_SNP [dm3] 3L_4238717_SNP [dm6]	G	T	2.851e^-5	0.583	INTERGENIC
3L	4242100	3L_4242100_SNP [dm3] 3L_4242100_SNP [dm6]	T	C	2.881e^-5	0.583	UPSTREAM pav INTRON CG14997	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	711857	3L_711857_SNP [dm3] 3L_711857_SNP [dm6]	A	C	2.887e^-5	0.583	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	6735678	2L_6735678_SNP [dm3] 2L_6735678_SNP [dm6]	T	G	2.890e^-5	0.583	UTR_3_PRIME TTLL3B DOWNSTREAM TTLL3A	TF binding site BDTNP1_TFBS_twi
3L	712337	3L_712337_SNP [dm3] 3L_712337_SNP [dm6]	G	T	2.974e^-5	0.589	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	14452456	2R_14452456_SNP [dm3] 2R_18564951_SNP [dm6]	G	A	3.014e^-5	0.589	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4238769	3L_4238769_SNP [dm3] 3L_4238769_SNP [dm6]	T	C	3.050e^-5	0.589	INTERGENIC
2L	7365708	2L_7365708_SNP [dm3] 2L_7365708_SNP [dm6]	C	T	3.077e^-5	0.589	INTRON Wnt10
2R	20658290	2R_20658290_DEL [dm3] 2R_24770767_DEL [dm6]	TG	T	3.110e^-5	0.589	UTR_3_PRIME Eps-15 INTRON Eps-15	TF binding site BDTNP1_TFBS_prd
3L	6100247	3L_6100247_SNP [dm3] 3L_6107147_SNP [dm6]	C	T	3.176e^-5	0.589	INTRON Ets65A	TF binding site mE1_TFBS_cad
2L	16170031	2L_16170031_SNP [dm3] 2L_16170031_SNP [dm6]	C	T	3.196e^-5	0.589	INTRON Ca-alpha1D
3R	13570329	3R_13570329_SNP [dm3] 3R_17744607_SNP [dm6]	A	C	3.203e^-5	0.589	INTRON TyrRII	TF binding site mE1_TFBS_cad
2L	1034963	2L_1034963_SNP [dm3] 2L_1034963_SNP [dm6]	A	G	3.204e^-5	0.589	UPSTREAM IA-2 INTRON IA-2
2R	14678243	2R_14678243_SNP [dm3] 2R_18790738_SNP [dm6]	A	T	3.274e^-5	0.59	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27129265	3R_27129265_SNP [dm3] 3R_31303543_SNP [dm6]	T	C	3.309e^-5	0.59	SYNONYMOUS_CODING CG11340	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	711790	3L_711790_SNP [dm3] 3L_711790_SNP [dm6]	A	T	3.326e^-5	0.59	UTR_5_PRIME CG13896	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	25593360	3R_25593360_SNP [dm3] 3R_29767638_SNP [dm6]	T	A	3.363e^-5	0.59	INTRON kay	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	16983394	3L_16983394_SNP [dm3] 3L_16990294_SNP [dm6]	C	A	3.370e^-5	0.59	INTRON Exn
3R	20551315	3R_20551315_DEL [dm3] 3R_24725593_DEL [dm6]	CA	C	3.479e^-5	0.596	INTRON tok	TF binding site BDTNP1_TFBS_dl
3R	16485754	3R_16485754_DEL [dm3] 3R_20660032_DEL [dm6]	AG	A	3.494e^-5	0.596	UPSTREAM Nep4 INTERGENIC
3L	18113039	3L_18113039_SNP [dm3] 3L_18119939_SNP [dm6]	C	A	3.499e^-5	0.596	SYNONYMOUS_CODING CG7341 DOWNSTREAM CG32195 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	27129738	3R_27129738_SNP [dm3] 3R_31304016_SNP [dm6]	G	A	3.606e^-5	0.604	SYNONYMOUS_CODING CG11340
X	8156849	X_8156849_SNP [dm3] X_8262816_SNP [dm6]	T	C	3.609e^-5	0.604	INTRON CG1632	TF binding site BDTNP1_TFBS_da
2L	9111772	2L_9111772_SNP [dm3] 2L_9111772_SNP [dm6]	G	C	3.657e^-5	0.606	UPSTREAM Or30a INTERGENIC
3R	4340520	3R_4340520_SNP [dm3] 3R_8514798_SNP [dm6]	T	A	3.731e^-5	0.606	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	5448651	3R_5448651_SNP [dm3] 3R_9622929_SNP [dm6]	A	T	3.734e^-5	0.606	UPSTREAM CG8312 INTRON CG8312
3L	12450024	3L_12450024_SNP [dm3] 3L_12456924_SNP [dm6]	G	A	3.877e^-5	0.606	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	14051317	2R_14051317_SNP [dm3] 2R_18163812_SNP [dm6]	G	A	3.905e^-5	0.606	UTR_3_PRIME CG10915 DOWNSTREAM Nup75
3L	12900542	3L_12900542_SNP [dm3] 3L_12907442_SNP [dm6]	A	G	3.912e^-5	0.606	INTERGENIC
3L	14813948	3L_14813948_SNP [dm3] 3L_14820848_SNP [dm6]	G	A	3.971e^-5	0.606	INTRON CG17839
3L	16983298	3L_16983298_INS [dm3] 3L_16990198_INS [dm6]	A	AG	3.992e^-5	0.606	INTRON Exn
2L	10482563	2L_10482563_SNP [dm3] 2L_10482563_SNP [dm6]	C	A	3.994e^-5	0.606	NON_SYNONYMOUS_CODING RluA-2 UTR_3_PRIME RluA-2 UPSTREAM Grip75	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	19995800	X_19995800_SNP [dm3] X_20101767_SNP [dm6]	G	C	4.009e^-5	0.606	INTERGENIC	transposable element FlyBase
2L	4863592	2L_4863592_SNP [dm3] 2L_4863592_SNP [dm6]	C	G	4.134e^-5	0.606	INTRON pog
3R	4934322	3R_4934322_SNP [dm3] 3R_9108600_SNP [dm6]	C	T	4.151e^-5	0.606	INTRON pum
X	10569471	X_10569471_SNP [dm3] X_10675438_SNP [dm6]	A	C	4.154e^-5	0.606	INTRON X11Lbeta
2R	8673583	2R_8673583_SNP [dm3] 2R_12786078_SNP [dm6]	G	A	4.209e^-5	0.606	INTRON sca EXON CR45137	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4537412	X_4537412_SNP [dm3] X_4643379_SNP [dm6]	C	T	4.217e^-5	0.606	INTRON CG3081 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13600041	3R_13600041_SNP [dm3] 3R_17774319_SNP [dm6]	C	T	4.243e^-5	0.606	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3L	9783263	3L_9783263_SNP [dm3] 3L_9790163_SNP [dm6]	T	G	4.254e^-5	0.606	DOWNSTREAM Zasp67 INTRON Zasp67	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	673251	2L_673251_SNP [dm3] 2L_673251_SNP [dm6]	A	G	4.290e^-5	0.606	INTRON ds
X	8156894	X_8156894_INS [dm3] X_8262861_INS [dm6]	T	TTCCACGCTCCGAACCAAAT...	4.300e^-5	0.606	INTRON CG1632	TF binding site BDTNP1_TFBS_da
3L	18202542	3L_18202542_SNP [dm3] 3L_18209442_SNP [dm6]	A	T	4.381e^-5	0.606	INTERGENIC
2R	14452462	2R_14452462_SNP [dm3] 2R_18564957_SNP [dm6]	A	C	4.421e^-5	0.606	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	27125747	3R_27125747_SNP [dm3] 3R_31300025_SNP [dm6]	C	T	4.438e^-5	0.606	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1734436	3L_1734436_SNP [dm3] 3L_1734436_SNP [dm6]	A	G	4.537e^-5	0.606	SPLICE_SITE_REGION Oseg4 INTRON Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16727030	3L_16727030_SNP [dm3] 3L_16733930_SNP [dm6]	T	C	4.554e^-5	0.606	INTRON CG9701
X	15518672	X_15518672_SNP [dm3] X_15624639_SNP [dm6]	G	A	4.584e^-5	0.606	INTRON sog	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19553902	2R_19553902_SNP [dm3] 2R_23666379_SNP [dm6]	G	C	4.587e^-5	0.606	UPSTREAM Pde8 INTRON Pde8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8673575	2R_8673575_SNP [dm3] 2R_12786070_SNP [dm6]	G	A	4.600e^-5	0.606	INTRON sca EXON CR45137	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4238771	3L_4238771_SNP [dm3] 3L_4238771_SNP [dm6]	G	T	4.630e^-5	0.606	INTERGENIC
2L	4306167	2L_4306167_SNP [dm3] 2L_4306167_SNP [dm6]	A	G	4.631e^-5	0.606	DOWNSTREAM tutl INTRON tutl	TF binding site mE1_TFBS_chinmo
3R	27132176	3R_27132176_SNP [dm3] 3R_31306454_SNP [dm6]	A	T	4.644e^-5	0.606	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	4934321	3R_4934321_SNP [dm3] 3R_9108599_SNP [dm6]	G	A	4.650e^-5	0.606	INTRON pum
X	9007178	X_9007178_SNP [dm3] X_9113145_SNP [dm6]	T	A	4.709e^-5	0.606	INTRON AP-1gamma
3R	13600203	3R_13600203_SNP [dm3] 3R_17774481_SNP [dm6]	C	T	4.734e^-5	0.606	UTR_5_PRIME CG43102 INTRON CG43102
3R	13600449	3R_13600449_SNP [dm3] 3R_17774727_SNP [dm6]	C	T	4.734e^-5	0.606	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl
X	2926734	X_2926734_SNP [dm3] X_3032701_SNP [dm6]	C	A	4.797e^-5	0.606	INTRON kirre
3L	837693	3L_837693_SNP [dm3] 3L_837693_SNP [dm6]	A	C	4.872e^-5	0.606	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	8447278	2L_8447278_SNP [dm3] 2L_8447278_SNP [dm6]	T	G	4.905e^-5	0.606	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	5137887	3R_5137887_SNP [dm3] 3R_9312165_SNP [dm6]	A	G	4.908e^-5	0.606	INTRON CG8861
2L	16008929	2L_16008929_SNP [dm3] 2L_16008929_SNP [dm6]	C	T	4.919e^-5	0.606	INTRON beat-Ic	TF binding site mE1_TFBS_HSA
2L	9103236	2L_9103236_SNP [dm3] 2L_9103236_SNP [dm6]	C	T	4.962e^-5	0.606	INTERGENIC
3L	14565106	3L_14565106_DEL [dm3] 3L_14572006_DEL [dm6]	TT	T	4.979e^-5	0.606	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	4091094	X_4091094_DEL [dm3] X_4197061_DEL [dm6]	AAA	A	4.998e^-5	0.606	INTRON Fas2
3R	26321582	3R_26321582_SNP [dm3] 3R_30495860_SNP [dm6]	G	A	5.009e^-5	0.606	DOWNSTREAM PH4alphaNE1 INTRON PH4alphaMP
3R	5129982	3R_5129982_SNP [dm3] 3R_9304260_SNP [dm6]	C	G	5.121e^-5	0.612	INTRON CG8861
3R	14771210	3R_14771210_SNP [dm3] 3R_18945488_SNP [dm6]	G	A	5.126e^-5	0.612	INTRON CG42613
3R	16485752	3R_16485752_SNP [dm3] 3R_20660030_SNP [dm6]	G	C	5.179e^-5	0.615	UPSTREAM Nep4 INTERGENIC
X	14154365	X_14154365_DEL [dm3] X_14260332_DEL [dm6]	AA	C	5.241e^-5	0.616	UPSTREAM CG1461 INTERGENIC
3L	4238711	3L_4238711_SNP [dm3] 3L_4238711_SNP [dm6]	T	C	5.294e^-5	0.616	INTERGENIC
2R	10970044	2R_10970044_SNP [dm3] 2R_15082539_SNP [dm6]	A	G	5.333e^-5	0.616	INTERGENIC
3L	20959207	3L_20959207_SNP [dm3] 3L_20966107_SNP [dm6]	T	C	5.373e^-5	0.616	NON_SYNONYMOUS_CODING CG12983 DOWNSTREAM CG33287 INTRON CG12983
2L	4292804	2L_4292804_INS [dm3] 2L_4292804_INS [dm6]	A	AA	5.385e^-5	0.616	INTRON tutl
3R	27136518	3R_27136518_SNP [dm3] 3R_31310796_SNP [dm6]	T	A	5.386e^-5	0.616	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	4346787	3R_4346787_SNP [dm3] 3R_8521065_SNP [dm6]	C	T	5.445e^-5	0.619	SYNONYMOUS_CODING CG11737 UPSTREAM CG31454
3L	712319	3L_712319_INS [dm3] 3L_712319_INS [dm6]	C	CA	5.558e^-5	0.624	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712342	3L_712342_SNP [dm3] 3L_712342_SNP [dm6]	A	T	5.558e^-5	0.624	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	4091100	X_4091100_SNP [dm3] X_4197067_SNP [dm6]	G	C	5.624e^-5	0.625	INTRON Fas2
X	15422778	X_15422778_SNP [dm3] X_15528745_SNP [dm6]	T	A	5.638e^-5	0.625	INTRON Ac13E
3R	10828808	3R_10828808_SNP [dm3] 3R_15003086_SNP [dm6]	G	A	5.705e^-5	0.625	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6100199	3L_6100199_SNP [dm3] 3L_6107099_SNP [dm6]	C	T	5.722e^-5	0.625	INTRON Ets65A	TF binding site mE1_TFBS_cad
X	8156863	X_8156863_SNP [dm3] X_8262830_SNP [dm6]	T	C	5.731e^-5	0.625	INTRON CG1632	TF binding site BDTNP1_TFBS_da
3L	3874445	3L_3874445_SNP [dm3] 3L_3874445_SNP [dm6]	T	G	5.832e^-5	0.625	INTERGENIC
3L	20187557	3L_20187557_DEL [dm3] 3L_20194457_DEL [dm6]	CAC	C	5.839e^-5	0.625	INTRON CG42674
2R	15743118	2R_15743118_SNP [dm3] 2R_19855613_SNP [dm6]	T	C	5.852e^-5	0.625	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1901310	3L_1901310_SNP [dm3] 3L_1901310_SNP [dm6]	C	T	5.881e^-5	0.625	UTR_3_PRIME CG1887 INTRON CG1887	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
X	20227751	X_20227751_INS [dm3] X_20356724_INS [dm6]	C	CGC	5.911e^-5	0.625	INTERGENIC
2L	19123059	2L_19123059_SNP [dm3] 2L_19123059_SNP [dm6]	A	T	5.963e^-5	0.625	DOWNSTREAM l_2_37Cb INTRON l_2_37Cc
2L	15090507	2L_15090507_SNP [dm3] 2L_15090507_SNP [dm6]	T	C	5.967e^-5	0.625	INTRON CG15270
2R	13723571	2R_13723571_SNP [dm3] 2R_17836066_SNP [dm6]	A	G	6.061e^-5	0.63	INTRON grh
3R	11435348	3R_11435348_SNP [dm3] 3R_15609626_SNP [dm6]	A	G	6.094e^-5	0.63	INTERGENIC
3L	4242397	3L_4242397_SNP [dm3] 3L_4242397_SNP [dm6]	C	T	6.159e^-5	0.63	SYNONYMOUS_CODING CG14997 UPSTREAM pav	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	4292764	2L_4292764_SNP [dm3] 2L_4292764_SNP [dm6]	T	C	6.182e^-5	0.63	INTRON tutl
2L	15469687	2L_15469687_SNP [dm3] 2L_15469687_SNP [dm6]	T	A	6.380e^-5	0.63	UPSTREAM CR45353 INTERGENIC
X	13934374	X_13934374_SNP [dm3] X_14040341_SNP [dm6]	C	T	6.383e^-5	0.63	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7993136	X_7993136_SNP [dm3] X_8099103_SNP [dm6]	C	A	6.474e^-5	0.63	INTRON CG2258	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9959340	3R_9959340_SNP [dm3] 3R_14133618_SNP [dm6]	C	T	6.589e^-5	0.63	INTERGENIC
3R	27129490	3R_27129490_SNP [dm3] 3R_31303768_SNP [dm6]	A	G	6.616e^-5	0.63	SYNONYMOUS_CODING CG11340	TF binding site mE1_TFBS_sens
3L	712335	3L_712335_SNP [dm3] 3L_712335_SNP [dm6]	T	A	6.621e^-5	0.63	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	4292732	2L_4292732_SNP [dm3] 2L_4292732_SNP [dm6]	G	T	6.651e^-5	0.63	INTRON tutl
3L	2647596	3L_2647596_SNP [dm3] 3L_2647596_SNP [dm6]	C	A	6.663e^-5	0.63	UPSTREAM CG1246 DOWNSTREAM CG1143 INTERGENIC
3L	1733121	3L_1733121_SNP [dm3] 3L_1733121_SNP [dm6]	A	G	6.678e^-5	0.63	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18025509	3L_18025509_SNP [dm3] 3L_18032409_SNP [dm6]	C	T	6.690e^-5	0.63	INTRON Eip75B
3R	22109362	3R_22109362_SNP [dm3] 3R_26283640_SNP [dm6]	G	A	6.713e^-5	0.63	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	712343	3L_712343_SNP [dm3] 3L_712343_SNP [dm6]	A	C	6.731e^-5	0.63	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	14859243	X_14859243_SNP [dm3] X_14965210_SNP [dm6]	G	A	6.747e^-5	0.63	INTRON eag
3R	24353994	3R_24353994_SNP [dm3] 3R_28528272_SNP [dm6]	G	A	6.830e^-5	0.63	NON_SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17302534	2L_17302534_SNP [dm3] 2L_17302534_SNP [dm6]	A	G	6.858e^-5	0.63	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19553896	2R_19553896_SNP [dm3] 2R_23666373_SNP [dm6]	C	T	6.867e^-5	0.63	UPSTREAM Pde8 INTRON Pde8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16983323	3L_16983323_SNP [dm3] 3L_16990223_SNP [dm6]	A	G	6.919e^-5	0.63	INTRON Exn
2L	17302565	2L_17302565_SNP [dm3] 2L_17302565_SNP [dm6]	C	A	6.935e^-5	0.63	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	12773807	X_12773807_INS [dm3] X_12879774_INS [dm6]	A	AGCTA	7.050e^-5	0.63	INTRON Pde9	TF binding site BDTNP1_TFBS_dl
3R	25779128	3R_25779128_SNP [dm3] 3R_29953406_SNP [dm6]	G	A	7.115e^-5	0.63	SYNONYMOUS_CODING TkR99D
2R	12278778	2R_12278778_SNP [dm3] 2R_16391273_SNP [dm6]	G	A	7.135e^-5	0.63	INTRON Sema-2b	TF binding site mE1_TFBS_chinmo
3L	18112916	3L_18112916_SNP [dm3] 3L_18119816_SNP [dm6]	A	C	7.259e^-5	0.63	UTR_5_PRIME CG7341 DOWNSTREAM CG32195	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	5448817	3R_5448817_SNP [dm3] 3R_9623095_SNP [dm6]	C	A	7.263e^-5	0.63	INTRON CG8312	TF binding site mE1_TFBS_cad
3L	11791042	3L_11791042_SNP [dm3] 3L_11797942_SNP [dm6]	A	G	7.338e^-5	0.63	SYNONYMOUS_CODING Klp68D	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	19421607	X_19421607_DEL [dm3] X_19527574_DEL [dm6]	CAC	C	7.353e^-5	0.63	UPSTREAM CoRest INTRON CoRest	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13317500	3L_13317500_SNP [dm3] 3L_13324400_SNP [dm6]	A	C	7.356e^-5	0.63	EXON CR44558
X	12937100	X_12937100_SNP [dm3] X_13043067_SNP [dm6]	G	A	7.382e^-5	0.63	INTRON rad
2R	9147009	2R_9147009_SNP [dm3] 2R_13259504_SNP [dm6]	T	G	7.393e^-5	0.63	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2R	17028286	2R_17028286_SNP [dm3] 2R_21140781_SNP [dm6]	C	A	7.439e^-5	0.63	UPSTREAM Magi INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
X	14231319	X_14231319_SNP [dm3] X_14337286_SNP [dm6]	T	C	7.451e^-5	0.63	INTRON dpr8
3R	6747306	3R_6747306_SNP [dm3] 3R_10921584_SNP [dm6]	A	G	7.467e^-5	0.63	INTERGENIC
X	13934383	X_13934383_DEL [dm3] X_14040350_DEL [dm6]	TT	T	7.486e^-5	0.63	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14018530	2R_14018530_SNP [dm3] 2R_18131025_SNP [dm6]	T	C	7.506e^-5	0.63	SYNONYMOUS_CODING Hsf DOWNSTREAM Dip3
3L	18662988	3L_18662988_INS [dm3] 3L_18669888_INS [dm6]	G	GCTG	7.514e^-5	0.63	CODON_INSERTION Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	8447265	2L_8447265_SNP [dm3] 2L_8447265_SNP [dm6]	A	G	7.584e^-5	0.63	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	25588806	3R_25588806_SNP [dm3] 3R_29763084_SNP [dm6]	A	G	7.593e^-5	0.63	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7477117	3L_7477117_SNP [dm3] 3L_7484017_SNP [dm6]	G	T	7.676e^-5	0.63	INTERGENIC
3R	4339621	3R_4339621_SNP [dm3] 3R_8513899_SNP [dm6]	C	G	7.692e^-5	0.63	UPSTREAM Or85c INTERGENIC
3R	6747336	3R_6747336_DEL [dm3] 3R_10921614_DEL [dm6]	CTTTGTTATTATC...	C	7.735e^-5	0.63	INTERGENIC
X	5115825	X_5115825_SNP [dm3] X_5221792_SNP [dm6]	A	G	7.748e^-5	0.63	INTRON CG15465 & 1 other
X	793849	X_793849_SNP [dm3] X_899816_SNP [dm6]	A	C	7.806e^-5	0.63	UPSTREAM CG43867 INTRON CG43867	TF binding site mE1_TFBS_sens
X	4293464	X_4293464_SNP [dm3] X_4399431_SNP [dm6]	C	G	7.817e^-5	0.63	INTRON CR32773
3R	4339924	3R_4339924_SNP [dm3] 3R_8514202_SNP [dm6]	A	G	7.834e^-5	0.63	INTERGENIC
3L	14057292	3L_14057292_SNP [dm3] 3L_14064192_SNP [dm6]	C	T	7.859e^-5	0.63	INTRON CG32138	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	712455	3L_712455_SNP [dm3] 3L_712455_SNP [dm6]	C	T	7.880e^-5	0.63	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	1734509	3L_1734509_SNP [dm3] 3L_1734509_SNP [dm6]	G	A	7.913e^-5	0.63	SYNONYMOUS_CODING Oseg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1675714	2L_1675714_SNP [dm3] 2L_1675714_SNP [dm6]	T	A	7.919e^-5	0.63	INTRON chinmo
2L	1675720	2L_1675720_SNP [dm3] 2L_1675720_SNP [dm6]	C	G	7.919e^-5	0.63	INTRON chinmo
3L	6100265	3L_6100265_SNP [dm3] 3L_6107165_SNP [dm6]	C	T	7.929e^-5	0.63	INTRON Ets65A	TF binding site mE1_TFBS_cad
3R	5448700	3R_5448700_SNP [dm3] 3R_9622978_SNP [dm6]	G	T	7.964e^-5	0.63	UTR_5_PRIME CG8312 INTRON CG8312
X	14805567	X_14805567_SNP [dm3] X_14911534_SNP [dm6]	T	C	8.044e^-5	0.63	UPSTREAM CG14406 DOWNSTREAM CG12398 INTRON Flo2
X	6451166	X_6451166_SNP [dm3] X_6557133_SNP [dm6]	C	T	8.115e^-5	0.63	SYNONYMOUS_CODING CG34417 INTRON CG34417
2L	9129050	2L_9129050_SNP [dm3] 2L_9129050_SNP [dm6]	G	A	8.154e^-5	0.63	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6736542	2L_6736542_SNP [dm3] 2L_6736542_SNP [dm6]	G	A	8.220e^-5	0.63	SYNONYMOUS_CODING TTLL3A DOWNSTREAM TTLL3B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	27136571	3R_27136571_SNP [dm3] 3R_31310849_SNP [dm6]	A	G	8.259e^-5	0.63	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	17302476	2L_17302476_SNP [dm3] 2L_17302476_SNP [dm6]	A	C	8.262e^-5	0.63	INTERGENIC	TF binding site mE1_TFBS_sbb
2R	9147038	2R_9147038_SNP [dm3] 2R_13259533_SNP [dm6]	G	A	8.263e^-5	0.63	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
X	7624591	X_7624591_SNP [dm3] X_7730558_SNP [dm6]	G	A	8.285e^-5	0.63	NON_SYNONYMOUS_CODING CG12155	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13626041	2L_13626041_SNP [dm3] 2L_13626041_SNP [dm6]	G	A	8.348e^-5	0.63	INTRON kuz
3R	19382195	3R_19382195_DEL [dm3] 3R_23556473_DEL [dm6]	AA	A	8.353e^-5	0.63	UTR_5_PRIME CG10164 UPSTREAM beat-IV
2L	3436512	2L_3436512_SNP [dm3] 2L_3436512_SNP [dm6]	G	C	8.393e^-5	0.63	INTERGENIC
X	14227406	X_14227406_SNP [dm3] X_14333373_SNP [dm6]	T	C	8.395e^-5	0.63	INTRON dpr8
X	18636057	X_18636057_SNP [dm3] X_18742024_SNP [dm6]	T	G	8.437e^-5	0.63	INTERGENIC
X	4094154	X_4094154_SNP [dm3] X_4200121_SNP [dm6]	C	T	8.440e^-5	0.63	INTRON Fas2	TF binding site BDTNP1_TFBS_dl
X	4099366	X_4099366_SNP [dm3] X_4205333_SNP [dm6]	C	T	8.454e^-5	0.63	INTRON Fas2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	4238768	3L_4238768_SNP [dm3] 3L_4238768_SNP [dm6]	C	A	8.470e^-5	0.63	INTERGENIC
3R	16485807	3R_16485807_SNP [dm3] 3R_20660085_SNP [dm6]	G	A	8.552e^-5	0.63	UPSTREAM Nep4 INTERGENIC	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1 transposable element FlyBase
X	19995796	X_19995796_SNP [dm3] X_20101763_SNP [dm6]	G	T	8.601e^-5	0.63	INTERGENIC	transposable element FlyBase
X	7613947	X_7613947_SNP [dm3] X_7719914_SNP [dm6]	C	T	8.630e^-5	0.63	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13315135	2L_13315135_SNP [dm3] 2L_13315135_SNP [dm6]	A	C	8.661e^-5	0.63	INTRON CG43778
3R	10576458	3R_10576458_SNP [dm3] 3R_14750736_SNP [dm6]	G	T	8.689e^-5	0.63	INTRON jvl & 1 other
2R	14192198	2R_14192198_SNP [dm3] 2R_18304693_SNP [dm6]	C	T	8.724e^-5	0.63	UPSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	6747207	3R_6747207_SNP [dm3] 3R_10921485_SNP [dm6]	T	A	8.739e^-5	0.63	INTERGENIC
3R	19243493	3R_19243493_SNP [dm3] 3R_23417771_SNP [dm6]	C	A	8.741e^-5	0.63	INTRON CG4374	TF binding site mE1_TFBS_chinmo
2L	8608926	2L_8608926_SNP [dm3] 2L_8608926_SNP [dm6]	G	C	8.772e^-5	0.63	INTRON Sema-1a
X	12355297	X_12355297_SNP [dm3] X_12461264_SNP [dm6]	C	A	8.798e^-5	0.63	INTRON Rab40
2L	16008401	2L_16008401_SNP [dm3] 2L_16008401_SNP [dm6]	C	T	8.817e^-5	0.63	INTRON beat-Ic	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1731975	3L_1731975_SNP [dm3] 3L_1731975_SNP [dm6]	C	T	8.839e^-5	0.63	SYNONYMOUS_CODING Oseg4 UPSTREAM drpr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	715569	2L_715569_SNP [dm3] 2L_715569_SNP [dm6]	A	T	8.907e^-5	0.63	UPSTREAM ds DOWNSTREAM CR44988 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	11576600	2R_11576600_SNP [dm3] 2R_15689095_SNP [dm6]	G	T	8.922e^-5	0.63	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	7328313	2R_7328313_SNP [dm3] 2R_11440808_SNP [dm6]	G	A	8.954e^-5	0.63	INTRON CG7777
X	4106134	X_4106134_SNP [dm3] X_4212101_SNP [dm6]	A	T	9.019e^-5	0.63	UPSTREAM CG43288 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5448643	3R_5448643_SNP [dm3] 3R_9622921_SNP [dm6]	C	T	9.022e^-5	0.63	UPSTREAM CG8312 INTRON CG8312
2L	2415341	2L_2415341_SNP [dm3] 2L_2415341_SNP [dm6]	T	C	9.028e^-5	0.63	UPSTREAM CG18641 DOWNSTREAM CG31948 INTERGENIC
2L	928817	2L_928817_SNP [dm3] 2L_928817_SNP [dm6]	C	G	9.119e^-5	0.63	INTRON CG4341
2R	15697740	2R_15697740_SNP [dm3] 2R_19810235_SNP [dm6]	T	G	9.159e^-5	0.63	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7479886	3L_7479886_SNP [dm3] 3L_7486786_SNP [dm6]	C	T	9.162e^-5	0.63	INTRON mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4372242	3R_4372242_SNP [dm3] 3R_8546520_SNP [dm6]	G	A	9.240e^-5	0.63	UPSTREAM CR45574 DOWNSTREAM CR45575 INTERGENIC
3L	2646601	3L_2646601_SNP [dm3] 3L_2646601_SNP [dm6]	T	C	9.278e^-5	0.63	UTR_3_PRIME CG1143	TF binding site mE1_TFBS_cad
3L	4737892	3L_4737892_SNP [dm3] 3L_4737892_SNP [dm6]	T	C	9.279e^-5	0.63	INTRON RhoGEF64C
3L	18675315	3L_18675315_SNP [dm3] 3L_18682215_SNP [dm6]	C	T	9.280e^-5	0.63	START_GAINED CG32202 UTR_5_PRIME CG32202 UPSTREAM Sgf11 DOWNSTREAM Chmp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9147010	2R_9147010_SNP [dm3] 2R_13259505_SNP [dm6]	T	G	9.314e^-5	0.63	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3L	18024635	3L_18024635_SNP [dm3] 3L_18031535_SNP [dm6]	G	A	9.376e^-5	0.63	INTRON Eip75B
3L	2645866	3L_2645866_SNP [dm3] 3L_2645866_SNP [dm6]	A	G	9.402e^-5	0.63	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3750307	2L_3750307_SNP [dm3] 2L_3750307_SNP [dm6]	C	T	9.448e^-5	0.63	SYNONYMOUS_CODING CG10019
X	7613485	X_7613485_SNP [dm3] X_7719452_SNP [dm6]	G	A	9.504e^-5	0.63	INTERGENIC
3R	25125893	3R_25125893_INS [dm3] 3R_29300171_INS [dm6]	A	AA	9.515e^-5	0.63	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	25125906	3R_25125906_SNP [dm3] 3R_29300184_SNP [dm6]	A	C	9.515e^-5	0.63	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	12898355	3R_12898355_SNP [dm3] 3R_17072633_SNP [dm6]	A	G	9.516e^-5	0.63	UTR_5_PRIME Ns1 UPSTREAM mRpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17886984	2L_17886984_SNP [dm3] 2L_17886984_SNP [dm6]	A	T	9.529e^-5	0.63	INTERGENIC
2R	14271079	2R_14271079_MNP [dm3] 2R_18383574_MNP [dm6]	ACA	CAG	9.541e^-5	0.63	UPSTREAM IM1 & 2 others INTERGENIC
X	13095605	X_13095605_INS [dm3] X_13201572_INS [dm6]	G	GAAAATGGGAG...	9.611e^-5	0.632	FRAME_SHIFT CG44437 INTRON sno	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	18010104	3L_18010104_SNP [dm3] 3L_18017004_SNP [dm6]	T	G	9.706e^-5	0.633	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
2R	14678389	2R_14678389_SNP [dm3] 2R_18790884_SNP [dm6]	C	A	9.831e^-5	0.633	NON_SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17877874	2L_17877874_SNP [dm3] 2L_17877874_SNP [dm6]	T	A	9.833e^-5	0.633	INTERGENIC
3L	1734655	3L_1734655_SNP [dm3] 3L_1734655_SNP [dm6]	G	A	9.848e^-5	0.633	SYNONYMOUS_CODING Oseg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9128381	2R_9128381_SNP [dm3] 2R_13240876_SNP [dm6]	G	T	9.856e^-5	0.633	UTR_3_PRIME GstE14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12850971	X_12850971_SNP [dm3] X_12956938_SNP [dm6]	G	T	9.857e^-5	0.633	INTRON hec
X	12355327	X_12355327_SNP [dm3] X_12461294_SNP [dm6]	A	G	9.913e^-5	0.633	INTRON Rab40
2R	14271036	2R_14271036_SNP [dm3] 2R_18383531_SNP [dm6]	A	T	9.931e^-5	0.633	UPSTREAM IM1 & 1 other INTERGENIC
3R	18746227	3R_18746227_SNP [dm3] 3R_22920505_SNP [dm6]	G	C	9.933e^-5	0.633	INTRON klg
3L	712323	3L_712323_SNP [dm3] 3L_712323_SNP [dm6]	T	A	1.002e^-4	0.636	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	11322522	2R_11322522_SNP [dm3] 2R_15435017_SNP [dm6]	C	A	1.011e^-4	0.637	INTRON CG43729	TF binding site mE1_TFBS_chinmo
2L	7207266	2L_7207266_SNP [dm3] 2L_7207266_SNP [dm6]	T	A	1.013e^-4	0.637	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784
2R	9147422	2R_9147422_SNP [dm3] 2R_13259917_SNP [dm6]	A	T	1.013e^-4	0.637	UPSTREAM CG42319 INTERGENIC
X	13136787	X_13136787_SNP [dm3] X_13242754_SNP [dm6]	C	T	1.020e^-4	0.64	INTRON mew	TF binding site BDTNP1_TFBS_da
3L	11277473	3L_11277473_SNP [dm3] 3L_11284373_SNP [dm6]	G	A	1.024e^-4	0.64	UPSTREAM CR45404 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	1731275	3L_1731275_SNP [dm3] 3L_1731275_SNP [dm6]	A	G	1.029e^-4	0.641	UTR_3_PRIME Oseg4 UPSTREAM drpr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12238520	X_12238520_SNP [dm3] X_12344487_SNP [dm6]	C	T	1.051e^-4	0.651	INTERGENIC
3R	25226172	3R_25226172_DEL [dm3] 3R_29400450_DEL [dm6]	ATTAAGTATCAA...	A	1.053e^-4	0.651	INTRON Ptp99A
3R	15894935	3R_15894935_SNP [dm3] 3R_20069213_SNP [dm6]	G	T	1.065e^-4	0.651	INTERGENIC
3L	19318944	3L_19318944_SNP [dm3] 3L_19325844_SNP [dm6]	A	C	1.066e^-4	0.651	INTRON pip
3L	6001663	3L_6001663_SNP [dm3] 3L_6008563_SNP [dm6]	C	A	1.068e^-4	0.651	DOWNSTREAM alphaKap4 INTRON PVRAP
3L	6100268	3L_6100268_SNP [dm3] 3L_6107168_SNP [dm6]	G	C	1.069e^-4	0.651	INTRON Ets65A	TF binding site mE1_TFBS_cad
3L	8647382	3L_8647382_SNP [dm3] 3L_8654282_SNP [dm6]	T	C	1.069e^-4	0.651	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12923235	X_12923235_SNP [dm3] X_13029202_SNP [dm6]	A	T	1.083e^-4	0.653	INTRON rad
2R	14271043	2R_14271043_DEL [dm3] 2R_18383538_DEL [dm6]	TAATGTCTTC	T	1.083e^-4	0.653	UPSTREAM IM1 & 1 other INTERGENIC
3R	27128968	3R_27128968_SNP [dm3] 3R_31303246_SNP [dm6]	C	T	1.084e^-4	0.653	SYNONYMOUS_CODING CG11340	TF binding site mE1_TFBS_sens
3L	21424490	3L_21424490_SNP [dm3] 3L_21431390_SNP [dm6]	A	C	1.090e^-4	0.653	SYNONYMOUS_CODING CG33288 INTRON barc	TF binding site mE1_TFBS_sens
X	7613900	X_7613900_SNP [dm3] X_7719867_SNP [dm6]	C	T	1.091e^-4	0.653	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	4415773	3R_4415773_SNP [dm3] 3R_8590051_SNP [dm6]	G	T	1.102e^-4	0.654	INTRON 5-HT2B	TF binding site mE1_TFBS_cad
3R	24820920	3R_24820920_SNP [dm3] 3R_28995198_SNP [dm6]	A	G	1.102e^-4	0.654	INTRON wat	TF binding site mE1_TFBS_HSA
3L	5887955	3L_5887955_SNP [dm3] 3L_5894855_SNP [dm6]	T	G	1.105e^-4	0.654	DOWNSTREAM Pole2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24821130	3R_24821130_SNP [dm3] 3R_28995408_SNP [dm6]	A	G	1.106e^-4	0.654	INTRON wat
2L	10565818	2L_10565818_SNP [dm3] 2L_10565818_SNP [dm6]	A	T	1.115e^-4	0.654	INTRON Trim9
3R	24791488	3R_24791488_SNP [dm3] 3R_28965766_SNP [dm6]	A	C	1.122e^-4	0.654	INTRON CG14521
X	12773814	X_12773814_SNP [dm3] X_12879781_SNP [dm6]	C	T	1.126e^-4	0.654	INTRON Pde9	TF binding site BDTNP1_TFBS_dl
2L	588293	2L_588293_SNP [dm3] 2L_588293_SNP [dm6]	G	T	1.127e^-4	0.654	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10840362	2R_10840362_SNP [dm3] 2R_14952857_SNP [dm6]	T	G	1.128e^-4	0.654	INTRON aPKC
2R	8951312	2R_8951312_SNP [dm3] 2R_13063807_SNP [dm6]	T	A	1.134e^-4	0.654	INTRON Drl-2
3L	15757767	3L_15757767_DEL [dm3] 3L_15764667_DEL [dm6]	TGCTTTAATCTTT...	T	1.135e^-4	0.654	INTERGENIC
3L	4056871	3L_4056871_SNP [dm3] 3L_4056871_SNP [dm6]	A	G	1.136e^-4	0.654	INTRON CG1136	TF binding site mE1_TFBS_cad
2L	19802428	2L_19802428_SNP [dm3] 2L_19802428_SNP [dm6]	A	G	1.138e^-4	0.654	INTRON sick
3L	22930118	3L_22930118_SNP [dm3] 3L_22937018_SNP [dm6]	A	T	1.142e^-4	0.655	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17887201	2L_17887201_SNP [dm3] 2L_17887201_SNP [dm6]	T	A	1.145e^-4	0.655	INTERGENIC
2L	13720507	2L_13720507_SNP [dm3] 2L_13720507_SNP [dm6]	G	T	1.151e^-4	0.656	INTERGENIC
X	7624737	X_7624737_SNP [dm3] X_7730704_SNP [dm6]	A	G	1.167e^-4	0.662	SYNONYMOUS_CODING CG12155	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13315113	2L_13315113_SNP [dm3] 2L_13315113_SNP [dm6]	A	G	1.176e^-4	0.662	INTRON CG43778
2R	10840370	2R_10840370_SNP [dm3] 2R_14952865_SNP [dm6]	A	G	1.181e^-4	0.662	INTRON aPKC
2R	14049467	2R_14049467_SNP [dm3] 2R_18161962_SNP [dm6]	G	A	1.184e^-4	0.662	SYNONYMOUS_CODING CG10915
2L	5456944	2L_5456944_SNP [dm3] 2L_5456944_SNP [dm6]	G	A	1.188e^-4	0.662	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18917742	2L_18917742_SNP [dm3] 2L_18917742_SNP [dm6]	G	A	1.191e^-4	0.662	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	18264596	X_18264596_SNP [dm3] X_18370563_SNP [dm6]	A	G	1.191e^-4	0.662	UPSTREAM CrebB & 1 other INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Trl
3L	8391972	3L_8391972_SNP [dm3] 3L_8398872_SNP [dm6]	A	T	1.193e^-4	0.662	INTRON CG7120
3R	5423421	3R_5423421_SNP [dm3] 3R_9597699_SNP [dm6]	T	C	1.203e^-4	0.662	INTRON CG8312
3L	1734469	3L_1734469_SNP [dm3] 3L_1734469_SNP [dm6]	G	A	1.207e^-4	0.662	INTRON Oseg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12207911	2L_12207911_SNP [dm3] 2L_12207911_SNP [dm6]	T	A	1.209e^-4	0.662	UTR_5_PRIME CG31759 UPSTREAM CG31759 INTRON aret
X	6788786	X_6788786_SNP [dm3] X_6894753_SNP [dm6]	A	C	1.219e^-4	0.662	INTERGENIC
3L	712322	3L_712322_SNP [dm3] 3L_712322_SNP [dm6]	A	G	1.219e^-4	0.662	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	18821060	3R_18821060_SNP [dm3] 3R_22995338_SNP [dm6]	G	A	1.220e^-4	0.662	INTRON Nha2
X	20561531	X_20561531_SNP [dm3] X_20690504_SNP [dm6]	A	T	1.222e^-4	0.662	UPSTREAM run EXON CR45610	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	13265005	X_13265005_SNP [dm3] X_13370972_SNP [dm6]	G	A	1.223e^-4	0.662	UPSTREAM CG1640 DOWNSTREAM dmrt11E INTRON CG1640	TF binding site BDTNP1_TFBS_dl
3R	15894153	3R_15894153_INS [dm3] 3R_20068431_INS [dm6]	T	TAGTT	1.229e^-4	0.662	INTERGENIC
X	12754429	X_12754429_SNP [dm3] X_12860396_SNP [dm6]	C	A	1.233e^-4	0.662	INTRON Pde9
2R	9147155	2R_9147155_SNP [dm3] 2R_13259650_SNP [dm6]	A	T	1.234e^-4	0.662	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3R	24486158	3R_24486158_SNP [dm3] 3R_28660436_SNP [dm6]	C	T	1.241e^-4	0.662	INTERGENIC
2L	2360614	2L_2360614_SNP [dm3] 2L_2360614_SNP [dm6]	A	G	1.253e^-4	0.662	INTRON Rab5
2L	9125639	2L_9125639_SNP [dm3] 2L_9125639_SNP [dm6]	C	G	1.258e^-4	0.662	UPSTREAM CG32982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	5709131	3R_5709131_SNP [dm3] 3R_9883409_SNP [dm6]	C	G	1.259e^-4	0.662	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	991978	3R_991978_SNP [dm3] 3R_5166256_SNP [dm6]	T	C	1.261e^-4	0.662	SYNONYMOUS_CODING dpr16	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4004096	3L_4004096_SNP [dm3] 3L_4004096_SNP [dm6]	G	T	1.265e^-4	0.662	INTRON CG14985
2R	7066775	2R_7066775_SNP [dm3] 2R_11179270_SNP [dm6]	G	C	1.266e^-4	0.662	INTRON shn	TF binding site mE1_TFBS_inv
2L	15281202	2L_15281202_DEL [dm3] 2L_15281202_DEL [dm6]	CC	T	1.267e^-4	0.662	DOWNSTREAM CR45349 INTERGENIC
2L	9105311	2L_9105311_SNP [dm3] 2L_9105311_SNP [dm6]	G	T	1.274e^-4	0.662	INTERGENIC
2R	11128731	2R_11128731_SNP [dm3] 2R_15241226_SNP [dm6]	A	G	1.277e^-4	0.662	UTR_5_PRIME Fs
3R	19382209	3R_19382209_SNP [dm3] 3R_23556487_SNP [dm6]	A	G	1.277e^-4	0.662	UTR_5_PRIME CG10164 UPSTREAM beat-IV
2R	13415564	2R_13415564_SNP [dm3] 2R_17528059_SNP [dm6]	G	A	1.282e^-4	0.662	SYNONYMOUS_CODING Patronin
3R	25249887	3R_25249887_SNP [dm3] 3R_29424165_SNP [dm6]	A	C	1.291e^-4	0.662	INTRON Ptp99A
3L	13317501	3L_13317501_SNP [dm3] 3L_13324401_SNP [dm6]	C	T	1.299e^-4	0.662	EXON CR44558
2L	17327630	2L_17327630_SNP [dm3] 2L_17327630_SNP [dm6]	C	G	1.305e^-4	0.662	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10575129	3R_10575129_SNP [dm3] 3R_14749407_SNP [dm6]	C	G	1.307e^-4	0.662	UPSTREAM jvl & 1 other INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	17650893	3R_17650893_SNP [dm3] 3R_21825171_SNP [dm6]	G	C	1.308e^-4	0.662	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	1732632	3L_1732632_SNP [dm3] 3L_1732632_SNP [dm6]	A	G	1.309e^-4	0.662	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20227733	X_20227733_SNP [dm3] X_20356706_SNP [dm6]	C	T	1.315e^-4	0.662	INTERGENIC
3R	4364479	3R_4364479_SNP [dm3] 3R_8538757_SNP [dm6]	G	A	1.317e^-4	0.662	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	7202010	2L_7202010_SNP [dm3] 2L_7202010_SNP [dm6]	C	T	1.318e^-4	0.662	INTRON CG4502
2R	14456869	2R_14456869_SNP [dm3] 2R_18569364_SNP [dm6]	C	G	1.322e^-4	0.662	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	16890200	X_16890200_SNP [dm3] X_16996167_SNP [dm6]	A	T	1.331e^-4	0.662	INTRON CG45002
3R	4342921	3R_4342921_SNP [dm3] 3R_8517199_SNP [dm6]	C	T	1.332e^-4	0.662	UPSTREAM CG11737 INTERGENIC
3L	9783418	3L_9783418_SNP [dm3] 3L_9790318_SNP [dm6]	G	A	1.347e^-4	0.662	DOWNSTREAM Zasp67 INTRON Zasp67	TF binding site mE1_TFBS_HSA
3R	15263482	3R_15263482_SNP [dm3] 3R_19437760_SNP [dm6]	T	C	1.350e^-4	0.662	INTRON CG31221
2L	4292788	2L_4292788_SNP [dm3] 2L_4292788_SNP [dm6]	G	T	1.358e^-4	0.662	INTRON tutl
3R	21366212	3R_21366212_SNP [dm3] 3R_25540490_SNP [dm6]	A	G	1.361e^-4	0.662	INTRON msi
2R	12696827	2R_12696827_SNP [dm3] 2R_16809322_SNP [dm6]	C	A	1.361e^-4	0.662	INTERGENIC
X	7623661	X_7623661_SNP [dm3] X_7729628_SNP [dm6]	G	T	1.370e^-4	0.662	INTRON CG12155	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	9441548	X_9441548_SNP [dm3] X_9547515_SNP [dm6]	T	G	1.371e^-4	0.662	INTRON CG32700
3R	19243589	3R_19243589_SNP [dm3] 3R_23417867_SNP [dm6]	G	A	1.374e^-4	0.662	INTRON CG4374
3R	13356430	3R_13356430_SNP [dm3] 3R_17530708_SNP [dm6]	C	T	1.374e^-4	0.662	INTERGENIC
3L	21408996	3L_21408996_SNP [dm3] 3L_21415896_SNP [dm6]	A	T	1.379e^-4	0.662	INTRON rgn
3R	17767309	3R_17767309_INS [dm3] 3R_21941587_INS [dm6]	T	TGTATATTTACGCTTT...	1.381e^-4	0.662	INTERGENIC
3L	2645600	3L_2645600_SNP [dm3] 3L_2645600_SNP [dm6]	A	T	1.386e^-4	0.662	INTRON CG1143	TF binding site mE1_TFBS_cad
3R	19114450	3R_19114450_SNP [dm3] 3R_23288728_SNP [dm6]	G	A	1.393e^-4	0.662	SYNONYMOUS_CODING CG4434 UPSTREAM CG17083	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9109674	2L_9109674_SNP [dm3] 2L_9109674_SNP [dm6]	A	T	1.393e^-4	0.662	INTERGENIC
3L	8418984	3L_8418984_DEL [dm3] 3L_8425884_DEL [dm6]	CCTATTGGAC	C	1.404e^-4	0.662	INTRON Cbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3R	25120035	3R_25120035_SNP [dm3] 3R_29294313_SNP [dm6]	G	A	1.417e^-4	0.662	UTR_3_PRIME CG14506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16008951	2L_16008951_SNP [dm3] 2L_16008951_SNP [dm6]	C	G	1.421e^-4	0.662	INTRON beat-Ic	TF binding site mE1_TFBS_HSA
3L	4243760	3L_4243760_SNP [dm3] 3L_4243760_SNP [dm6]	G	C	1.421e^-4	0.662	SPLICE_SITE_REGION pav INTRON pav	TF binding site mE1_TFBS_sens
3L	2646789	3L_2646789_SNP [dm3] 3L_2646789_SNP [dm6]	T	G	1.428e^-4	0.662	UTR_3_PRIME CG1143 DOWNSTREAM CG1143
3L	551174	3L_551174_SNP [dm3] 3L_551174_SNP [dm6]	T	A	1.432e^-4	0.662	INTRON hipk	TF binding site BDTNP1_TFBS_dl
X	9814806	X_9814806_DEL [dm3] X_9920773_DEL [dm6]	TT	T	1.433e^-4	0.662	INTERGENIC
X	20227718	X_20227718_SNP [dm3] X_20356691_SNP [dm6]	A	G	1.434e^-4	0.662	INTERGENIC
3R	4596948	3R_4596948_SNP [dm3] 3R_8771226_SNP [dm6]	C	A	1.443e^-4	0.662	DOWNSTREAM CG13318 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	24818894	3R_24818894_SNP [dm3] 3R_28993172_SNP [dm6]	C	A	1.446e^-4	0.662	UTR_3_PRIME wat
3L	18688290	3L_18688290_SNP [dm3] 3L_18695190_SNP [dm6]	C	G	1.446e^-4	0.662	INTRON CG6893
3L	7475914	3L_7475914_SNP [dm3] 3L_7482814_SNP [dm6]	G	T	1.447e^-4	0.662	INTERGENIC
3R	24820926	3R_24820926_SNP [dm3] 3R_28995204_SNP [dm6]	T	A	1.451e^-4	0.662	INTRON wat	TF binding site mE1_TFBS_HSA
3R	24827739	3R_24827739_SNP [dm3] 3R_29002017_SNP [dm6]	G	A	1.455e^-4	0.662	INTRON wat
2R	4950454	2R_4950454_SNP [dm3] 2R_9062949_SNP [dm6]	G	A	1.457e^-4	0.662	INTRON ana	regulatory region REDfly_CRMs
2L	2919154	2L_2919154_SNP [dm3] 2L_2919154_SNP [dm6]	A	G	1.460e^-4	0.662	INTRON lilli
3L	7072423	3L_7072423_SNP [dm3] 3L_7079323_SNP [dm6]	C	A	1.462e^-4	0.662	INTERGENIC
3L	4523020	3L_4523020_SNP [dm3] 3L_4523020_SNP [dm6]	C	A	1.466e^-4	0.662	INTRON Tie	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	19547836	2R_19547836_INS [dm3] 2R_23660313_INS [dm6]	T	TCTGT	1.472e^-4	0.662	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	1986122	2L_1986122_SNP [dm3] 2L_1986122_SNP [dm6]	A	T	1.476e^-4	0.662	INTRON Got2
2L	14379196	2L_14379196_SNP [dm3] 2L_14379196_SNP [dm6]	A	G	1.476e^-4	0.662	SYNONYMOUS_CODING ppk	TF binding site mE1_TFBS_sens
3R	13356215	3R_13356215_DEL [dm3] 3R_17530493_DEL [dm6]	AAA	A	1.477e^-4	0.662	INTERGENIC
2R	12112716	2R_12112716_SNP [dm3] 2R_16225211_SNP [dm6]	A	G	1.485e^-4	0.662	UTR_5_PRIME CG15706
3R	17031999	3R_17031999_SNP [dm3] 3R_21206277_SNP [dm6]	A	G	1.485e^-4	0.662	INTRON SNF4Agamma	TF binding site mE1_TFBS_Trl
3L	1563914	3L_1563914_DEL [dm3] 3L_1563914_DEL [dm6]	GA	G	1.489e^-4	0.662	INTRON CG7879	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	588252	2L_588252_SNP [dm3] 2L_588252_SNP [dm6]	C	A	1.489e^-4	0.662	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13211544	2L_13211544_SNP [dm3] 2L_13211544_SNP [dm6]	T	C	1.491e^-4	0.662	NON_SYNONYMOUS_CODING CG15482 DOWNSTREAM Pect & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19318930	3L_19318930_SNP [dm3] 3L_19325830_SNP [dm6]	T	C	1.493e^-4	0.662	INTRON pip
2L	9105472	2L_9105472_SNP [dm3] 2L_9105472_SNP [dm6]	A	T	1.495e^-4	0.662	INTERGENIC
X	8922480	X_8922480_SNP [dm3] X_9028447_SNP [dm6]	C	T	1.498e^-4	0.662	UTR_3_PRIME rdgA DOWNSTREAM rdgA INTRON CR43836
2R	14456859	2R_14456859_SNP [dm3] 2R_18569354_SNP [dm6]	C	T	1.502e^-4	0.662	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	12238340	X_12238340_SNP [dm3] X_12344307_SNP [dm6]	G	T	1.516e^-4	0.662	INTERGENIC
3L	2170084	3L_2170084_SNP [dm3] 3L_2170084_SNP [dm6]	A	C	1.526e^-4	0.662	SYNONYMOUS_CODING CG5704 UPSTREAM CG15879
3R	17032033	3R_17032033_SNP [dm3] 3R_21206311_SNP [dm6]	C	T	1.526e^-4	0.662	INTRON SNF4Agamma	TF binding site mE1_TFBS_Trl
2L	588302	2L_588302_SNP [dm3] 2L_588302_SNP [dm6]	A	C	1.529e^-4	0.662	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26318780	3R_26318780_SNP [dm3] 3R_30493058_SNP [dm6]	C	G	1.538e^-4	0.662	SYNONYMOUS_CODING PH4alphaMP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14771213	3R_14771213_SNP [dm3] 3R_18945491_SNP [dm6]	A	C	1.539e^-4	0.662	INTRON CG42613
3L	13487564	3L_13487564_SNP [dm3] 3L_13494464_SNP [dm6]	G	T	1.542e^-4	0.662	INTRON Tgi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	4094020	X_4094020_SNP [dm3] X_4199987_SNP [dm6]	T	C	1.544e^-4	0.662	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	27101747	3R_27101747_SNP [dm3] 3R_31276025_SNP [dm6]	G	T	1.546e^-4	0.662	INTERGENIC
X	19019176	X_19019176_SNP [dm3] X_19125143_SNP [dm6]	C	A	1.555e^-4	0.662	UTR_3_PRIME tgy UPSTREAM CG15882 DOWNSTREAM tgy
X	18636703	X_18636703_SNP [dm3] X_18742670_SNP [dm6]	A	T	1.561e^-4	0.662	INTERGENIC
3L	1732791	3L_1732791_SNP [dm3] 3L_1732791_SNP [dm6]	A	G	1.563e^-4	0.662	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24634354	3R_24634354_SNP [dm3] 3R_28808632_SNP [dm6]	T	C	1.577e^-4	0.662	SYNONYMOUS_CODING wdn	TF binding site mE1_TFBS_cad
2L	4624701	2L_4624701_SNP [dm3] 2L_4624701_SNP [dm6]	C	T	1.586e^-4	0.662	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	14679288	X_14679288_SNP [dm3] X_14785255_SNP [dm6]	T	C	1.590e^-4	0.662	UTR_3_PRIME Ag5r
3L	7480613	3L_7480613_SNP [dm3] 3L_7487513_SNP [dm6]	A	G	1.594e^-4	0.662	INTRON mthl6
2L	9105664	2L_9105664_SNP [dm3] 2L_9105664_SNP [dm6]	G	A	1.597e^-4	0.662	INTERGENIC
X	10569521	X_10569521_SNP [dm3] X_10675488_SNP [dm6]	T	A	1.603e^-4	0.662	INTRON X11Lbeta
3L	6100256	3L_6100256_SNP [dm3] 3L_6107156_SNP [dm6]	A	C	1.618e^-4	0.662	INTRON Ets65A	TF binding site mE1_TFBS_cad
3L	1564511	3L_1564511_SNP [dm3] 3L_1564511_SNP [dm6]	A	G	1.619e^-4	0.662	UPSTREAM CG12003 INTRON CG7879
2R	6588137	2R_6588137_SNP [dm3] 2R_10700632_SNP [dm6]	C	T	1.621e^-4	0.662	INTRON stan
3R	4415784	3R_4415784_SNP [dm3] 3R_8590062_SNP [dm6]	C	T	1.626e^-4	0.662	INTRON 5-HT2B	TF binding site mE1_TFBS_cad
3R	4415796	3R_4415796_SNP [dm3] 3R_8590074_SNP [dm6]	C	A	1.626e^-4	0.662	INTRON 5-HT2B	TF binding site mE1_TFBS_cad
3L	2170090	3L_2170090_SNP [dm3] 3L_2170090_SNP [dm6]	A	G	1.627e^-4	0.662	SYNONYMOUS_CODING CG5704 UPSTREAM CG15879
X	7897466	X_7897466_SNP [dm3] X_8003433_SNP [dm6]	T	C	1.628e^-4	0.662	INTRON Tbh
X	19436193	X_19436193_SNP [dm3] X_19542160_SNP [dm6]	A	G	1.631e^-4	0.662	INTRON CG32532
3L	13343644	3L_13343644_SNP [dm3] 3L_13350544_SNP [dm6]	A	G	1.635e^-4	0.662	SYNONYMOUS_CODING CG17687	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6747214	3R_6747214_SNP [dm3] 3R_10921492_SNP [dm6]	C	G	1.641e^-4	0.662	INTERGENIC
2R	3188996	2R_3188996_SNP [dm3] 2R_7301491_SNP [dm6]	T	A	1.641e^-4	0.662	DOWNSTREAM pwn INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18985584	2R_18985584_SNP [dm3] 2R_23098061_SNP [dm6]	T	C	1.644e^-4	0.662	INTERGENIC
3R	21366209	3R_21366209_SNP [dm3] 3R_25540487_SNP [dm6]	T	G	1.648e^-4	0.662	INTRON msi
3R	21366240	3R_21366240_SNP [dm3] 3R_25540518_SNP [dm6]	T	G	1.648e^-4	0.662	INTRON msi
3R	21366257	3R_21366257_SNP [dm3] 3R_25540535_SNP [dm6]	T	C	1.648e^-4	0.662	INTRON msi
3R	21366259	3R_21366259_SNP [dm3] 3R_25540537_SNP [dm6]	A	G	1.648e^-4	0.662	INTRON msi
3R	21366264	3R_21366264_INS [dm3] 3R_25540542_INS [dm6]	T	TTACC	1.648e^-4	0.662	INTRON msi
3R	21366355	3R_21366355_SNP [dm3] 3R_25540633_SNP [dm6]	C	A	1.648e^-4	0.662	INTRON msi
3L	1901306	3L_1901306_SNP [dm3] 3L_1901306_SNP [dm6]	T	C	1.655e^-4	0.662	UTR_3_PRIME CG1887 INTRON CG1887	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
3L	14471217	3L_14471217_SNP [dm3] 3L_14478117_SNP [dm6]	T	C	1.655e^-4	0.662	INTRON bbg
2L	588413	2L_588413_SNP [dm3] 2L_588413_SNP [dm6]	T	C	1.656e^-4	0.662	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
3R	26321569	3R_26321569_SNP [dm3] 3R_30495847_SNP [dm6]	G	A	1.658e^-4	0.662	DOWNSTREAM PH4alphaNE1 INTRON PH4alphaMP
2L	3154459	2L_3154459_SNP [dm3] 2L_3154459_SNP [dm6]	A	T	1.659e^-4	0.662	INTRON Mad
2R	17120729	2R_17120729_SNP [dm3] 2R_21233224_SNP [dm6]	A	G	1.661e^-4	0.662	INTRON ASPP
3R	2260500	3R_2260500_SNP [dm3] 3R_6434778_SNP [dm6]	C	T	1.663e^-4	0.662	INTRON gpp
3R	22109322	3R_22109322_SNP [dm3] 3R_26283600_SNP [dm6]	A	C	1.664e^-4	0.662	INTERGENIC
2R	9147026	2R_9147026_SNP [dm3] 2R_13259521_SNP [dm6]	T	A	1.665e^-4	0.662	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2L	14689608	2L_14689608_SNP [dm3] 2L_14689608_SNP [dm6]	A	G	1.667e^-4	0.662	UPSTREAM osp INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15293726	3R_15293726_INS [dm3] 3R_19468004_INS [dm6]	A	TTT	1.670e^-4	0.662	INTRON Dys
X	11121667	X_11121667_SNP [dm3] X_11227634_SNP [dm6]	T	C	1.674e^-4	0.662	INTRON CG44422
2R	19296626	2R_19296626_SNP [dm3] 2R_23409103_SNP [dm6]	T	A	1.675e^-4	0.662	INTERGENIC
2R	13231183	2R_13231183_SNP [dm3] 2R_17343678_SNP [dm6]	T	A	1.678e^-4	0.662	INTRON mbl
3R	13922099	3R_13922099_SNP [dm3] 3R_18096377_SNP [dm6]	G	C	1.679e^-4	0.662	SYNONYMOUS_CODING sr
3L	3873722	3L_3873722_SNP [dm3] 3L_3873722_SNP [dm6]	A	C	1.685e^-4	0.662	INTERGENIC	TF binding site mE1_TFBS_cad
3R	12353263	3R_12353263_SNP [dm3] 3R_16527541_SNP [dm6]	C	T	1.692e^-4	0.662	INTRON CG42342	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	711093	3L_711093_SNP [dm3] 3L_711093_SNP [dm6]	C	G	1.693e^-4	0.662	NON_SYNONYMOUS_CODING CG13896 UPSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
X	4093939	X_4093939_SNP [dm3] X_4199906_SNP [dm6]	A	C	1.696e^-4	0.662	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	7100238	2L_7100238_INS [dm3] 2L_7100238_INS [dm6]	G	GG	1.696e^-4	0.662	INTRON Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	6451169	X_6451169_SNP [dm3] X_6557136_SNP [dm6]	A	T	1.696e^-4	0.662	SYNONYMOUS_CODING CG34417 INTRON CG34417
3L	1564371	3L_1564371_SNP [dm3] 3L_1564371_SNP [dm6]	A	G	1.700e^-4	0.662	INTRON CG7879
3R	22109333	3R_22109333_SNP [dm3] 3R_26283611_SNP [dm6]	T	C	1.701e^-4	0.662	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	13599046	3R_13599046_SNP [dm3] 3R_17773324_SNP [dm6]	G	A	1.702e^-4	0.662	SYNONYMOUS_CODING CG43102
X	8156906	X_8156906_SNP [dm3] X_8262873_SNP [dm6]	G	T	1.703e^-4	0.662	INTRON CG1632	TF binding site BDTNP1_TFBS_da
X	6890537	X_6890537_SNP [dm3] X_6996504_SNP [dm6]	T	A	1.708e^-4	0.662	INTRON Inx7 EXON CR43837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18895731	3R_18895731_SNP [dm3] 3R_23070009_SNP [dm6]	A	G	1.711e^-4	0.662	DOWNSTREAM CG13830 INTERGENIC
2L	19681910	2L_19681910_SNP [dm3] 2L_19681910_SNP [dm6]	A	C	1.713e^-4	0.662	INTRON Lar
2L	5557577	2L_5557577_SNP [dm3] 2L_5557577_SNP [dm6]	A	T	1.716e^-4	0.662	SPLICE_SITE_REGION GluRIIA INTRON GluRIIA
2R	13415561	2R_13415561_SNP [dm3] 2R_17528056_SNP [dm6]	A	G	1.721e^-4	0.662	SYNONYMOUS_CODING Patronin
2R	13723561	2R_13723561_SNP [dm3] 2R_17836056_SNP [dm6]	T	C	1.721e^-4	0.662	INTRON grh
3L	12568589	3L_12568589_SNP [dm3] 3L_12575489_SNP [dm6]	G	T	1.723e^-4	0.662	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	22141543	3R_22141543_SNP [dm3] 3R_26315821_SNP [dm6]	T	A	1.727e^-4	0.662	INTERGENIC
3R	26618148	3R_26618148_SNP [dm3] 3R_30792426_SNP [dm6]	T	G	1.728e^-4	0.662	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
X	13136702	X_13136702_SNP [dm3] X_13242669_SNP [dm6]	T	A	1.734e^-4	0.662	INTRON mew	TF binding site BDTNP1_TFBS_da
X	14153791	X_14153791_SNP [dm3] X_14259758_SNP [dm6]	T	G	1.737e^-4	0.662	INTERGENIC
2R	6795339	2R_6795339_SNP [dm3] 2R_10907834_SNP [dm6]	G	T	1.745e^-4	0.662	INTERGENIC
3L	3877650	3L_3877650_SNP [dm3] 3L_3877650_SNP [dm6]	C	T	1.747e^-4	0.662	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1733503	3L_1733503_SNP [dm3] 3L_1733503_SNP [dm6]	G	A	1.747e^-4	0.662	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19296677	2R_19296677_SNP [dm3] 2R_23409154_SNP [dm6]	A	G	1.749e^-4	0.662	INTERGENIC
X	7617605	X_7617605_SNP [dm3] X_7723572_SNP [dm6]	A	T	1.753e^-4	0.662	NON_SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	9147034	2R_9147034_SNP [dm3] 2R_13259529_SNP [dm6]	G	T	1.755e^-4	0.662	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
X	7993142	X_7993142_SNP [dm3] X_8099109_SNP [dm6]	T	A	1.755e^-4	0.662	INTRON CG2258	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10088357	X_10088357_INS [dm3] X_10194324_INS [dm6]	G	GC	1.759e^-4	0.662	UTR_3_PRIME CG43902 INTRON CR44894
3L	4556696	3L_4556696_SNP [dm3] 3L_4556696_SNP [dm6]	T	A	1.764e^-4	0.662	UPSTREAM CG42540 INTRON CG42540
2R	14271068	2R_14271068_DEL [dm3] 2R_18383563_DEL [dm6]	TGCTTTT	T	1.768e^-4	0.662	UPSTREAM IM1 & 2 others INTERGENIC
2R	13361281	2R_13361281_SNP [dm3] 2R_17473776_SNP [dm6]	C	T	1.774e^-4	0.662	UTR_3_PRIME qkr54B DOWNSTREAM qkr54B
X	2618323	X_2618323_SNP [dm3] X_2724290_SNP [dm6]	T	A	1.778e^-4	0.662	UTR_5_PRIME fs_1_Ya DOWNSTREAM fs_1_Yb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3L	4715332	3L_4715332_SNP [dm3] 3L_4715332_SNP [dm6]	T	A	1.778e^-4	0.662	INTRON RhoGEF64C
3L	14832054	3L_14832054_SNP [dm3] 3L_14838954_SNP [dm6]	A	T	1.778e^-4	0.662	INTRON CG17839
X	5567228	X_5567228_DEL [dm3] X_5673195_DEL [dm6]	ATGT	C	1.779e^-4	0.662	DOWNSTREAM Tre1 INTRON RpL35	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	7207197	2L_7207197_SNP [dm3] 2L_7207197_SNP [dm6]	A	G	1.782e^-4	0.662	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784	TF binding site mE1_TFBS_sens
2L	17886969	2L_17886969_SNP [dm3] 2L_17886969_SNP [dm6]	A	T	1.791e^-4	0.662	INTERGENIC
2R	14271066	2R_14271066_SNP [dm3] 2R_18383561_SNP [dm6]	T	A	1.793e^-4	0.662	UPSTREAM IM1 & 1 other INTERGENIC
2L	2435458	2L_2435458_SNP [dm3] 2L_2435458_SNP [dm6]	T	A	1.793e^-4	0.662	INTRON dpp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	24831954	3R_24831954_SNP [dm3] 3R_29006232_SNP [dm6]	G	T	1.804e^-4	0.664	INTRON wat
2L	15559402	2L_15559402_SNP [dm3] 2L_15559402_SNP [dm6]	G	A	1.819e^-4	0.665	INTRON kek3
2L	588203	2L_588203_SNP [dm3] 2L_588203_SNP [dm6]	G	T	1.819e^-4	0.665	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16120231	2L_16120231_SNP [dm3] 2L_16120231_SNP [dm6]	T	C	1.819e^-4	0.665	INTERGENIC
2L	17333597	2L_17333597_SNP [dm3] 2L_17333597_SNP [dm6]	A	G	1.821e^-4	0.665	INTERGENIC
X	14208544	X_14208544_SNP [dm3] X_14314511_SNP [dm6]	A	T	1.822e^-4	0.665	DOWNSTREAM betaNACtes2 INTERGENIC
X	19996124	X_19996124_SNP [dm3] X_20102091_SNP [dm6]	A	T	1.828e^-4	0.665	INTERGENIC	transposable element FlyBase
2R	17122056	2R_17122056_SNP [dm3] 2R_21234551_SNP [dm6]	C	T	1.832e^-4	0.666	INTRON ASPP
X	6451376	X_6451376_SNP [dm3] X_6557343_SNP [dm6]	C	A	1.837e^-4	0.666	SYNONYMOUS_CODING CG34417 INTRON CG34417
2R	15781994	2R_15781994_SNP [dm3] 2R_19894489_SNP [dm6]	G	A	1.839e^-4	0.666	INTERGENIC
3R	25020656	3R_25020656_SNP [dm3] 3R_29194934_SNP [dm6]	C	T	1.850e^-4	0.667	UTR_5_PRIME CG14509
2L	16176557	2L_16176557_INS [dm3] 2L_16176557_INS [dm6]	A	AA	1.850e^-4	0.667	INTRON Ca-alpha1D
X	14859049	X_14859049_INS [dm3] X_14965016_INS [dm6]	C	CTATAAATTTGC...	1.855e^-4	0.667	INTRON eag
X	13095625	X_13095625_SNP [dm3] X_13201592_SNP [dm6]	G	A	1.861e^-4	0.667	SYNONYMOUS_CODING CG44437 INTRON sno	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	17861799	2L_17861799_SNP [dm3] 2L_17861799_SNP [dm6]	A	C	1.864e^-4	0.667	INTRON CadN2
3R	7987958	3R_7987958_INS [dm3] 3R_12162236_INS [dm6]	G	GGCCAACGAACCAGTCAG...	1.869e^-4	0.667	DOWNSTREAM Cpn INTERGENIC
3L	1718694	3L_1718694_SNP [dm3] 3L_1718694_SNP [dm6]	T	C	1.874e^-4	0.667	INTRON drpr	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	14079483	3L_14079483_DEL [dm3] 3L_14086383_DEL [dm6]	AAAGGAACTCA...	A	1.876e^-4	0.667	DOWNSTREAM CG8100 INTERGENIC
2R	14270956	2R_14270956_DEL [dm3] 2R_18383451_DEL [dm6]	ATTTTT	A	1.882e^-4	0.667	UPSTREAM IM1 & 1 other INTERGENIC
2L	17861776	2L_17861776_SNP [dm3] 2L_17861776_SNP [dm6]	T	A	1.882e^-4	0.667	INTRON CadN2
3R	14771192	3R_14771192_SNP [dm3] 3R_18945470_SNP [dm6]	A	C	1.883e^-4	0.667	INTRON CG42613
2L	2645281	2L_2645281_SNP [dm3] 2L_2645281_SNP [dm6]	C	A	1.911e^-4	0.671	UPSTREAM CR43852 INTERGENIC
2L	1239576	2L_1239576_SNP [dm3] 2L_1239576_SNP [dm6]	A	T	1.913e^-4	0.671	UPSTREAM CG5397 INTERGENIC
2L	15998543	2L_15998543_SNP [dm3] 2L_15998543_SNP [dm6]	T	C	1.915e^-4	0.671	INTERGENIC
3L	1565411	3L_1565411_SNP [dm3] 3L_1565411_SNP [dm6]	C	T	1.916e^-4	0.671	START_GAINED CG12003 UTR_5_PRIME CG12003 INTRON CG7879	TF binding site mE1_TFBS_sens
2L	7100231	2L_7100231_SNP [dm3] 2L_7100231_SNP [dm6]	T	G	1.920e^-4	0.671	INTRON Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	4232757	3L_4232757_SNP [dm3] 3L_4232757_SNP [dm6]	G	T	1.920e^-4	0.671	INTRON ImpL2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	20396321	3R_20396321_SNP [dm3] 3R_24570599_SNP [dm6]	T	A	1.921e^-4	0.671	INTRON CG13624
2R	19502631	2R_19502631_SNP [dm3] 2R_23615108_SNP [dm6]	T	C	1.923e^-4	0.671	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
3R	11905632	3R_11905632_SNP [dm3] 3R_16079910_SNP [dm6]	C	G	1.938e^-4	0.671	SYNONYMOUS_CODING CG32855 INTRON Mhcl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	6451181	X_6451181_SNP [dm3] X_6557148_SNP [dm6]	A	G	1.939e^-4	0.671	SYNONYMOUS_CODING CG34417 INTRON CG34417
2R	14271060	2R_14271060_SNP [dm3] 2R_18383555_SNP [dm6]	A	T	1.941e^-4	0.671	UPSTREAM IM1 & 1 other INTERGENIC
2R	14271062	2R_14271062_SNP [dm3] 2R_18383557_SNP [dm6]	T	G	1.941e^-4	0.671	UPSTREAM IM1 & 1 other INTERGENIC
2R	7256496	2R_7256496_SNP [dm3] 2R_11368991_SNP [dm6]	G	A	1.944e^-4	0.671	SYNONYMOUS_CODING CG13204	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7202015	2L_7202015_SNP [dm3] 2L_7202015_SNP [dm6]	C	A	1.948e^-4	0.671	INTRON CG4502
3R	2868311	3R_2868311_INS [dm3] 3R_7042589_INS [dm6]	C	CGGA	1.953e^-4	0.671	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	2218909	3L_2218909_SNP [dm3] 3L_2218909_SNP [dm6]	C	A	1.955e^-4	0.671	INTERGENIC	TF binding site mE1_TFBS_inv
2L	17287684	2L_17287684_SNP [dm3] 2L_17287684_SNP [dm6]	C	T	1.957e^-4	0.671	DOWNSTREAM CG15140 INTERGENIC
2L	8588349	2L_8588349_SNP [dm3] 2L_8588349_SNP [dm6]	C	A	1.961e^-4	0.671	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	15559403	2L_15559403_SNP [dm3] 2L_15559403_SNP [dm6]	G	A	1.962e^-4	0.671	INTRON kek3
2L	19681911	2L_19681911_SNP [dm3] 2L_19681911_SNP [dm6]	T	G	1.971e^-4	0.672	INTRON Lar
2L	566472	2L_566472_SNP [dm3] 2L_566472_SNP [dm6]	T	A	1.972e^-4	0.672	UTR_3_PRIME CG2794 INTRON Nle	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7202011	2L_7202011_SNP [dm3] 2L_7202011_SNP [dm6]	G	A	1.980e^-4	0.674	INTRON CG4502
X	10569813	X_10569813_SNP [dm3] X_10675780_SNP [dm6]	T	A	1.983e^-4	0.674	INTRON X11Lbeta
3R	14771266	3R_14771266_SNP [dm3] 3R_18945544_SNP [dm6]	G	T	1.992e^-4	0.674	INTRON CG42613
X	12355302	X_12355302_SNP [dm3] X_12461269_SNP [dm6]	A	G	1.993e^-4	0.674	INTRON Rab40
2R	6795340	2R_6795340_SNP [dm3] 2R_10907835_SNP [dm6]	A	G	1.995e^-4	0.674	INTERGENIC
X	10116351	X_10116351_SNP [dm3] X_10222318_SNP [dm6]	A	C	2.003e^-4	0.675	SPLICE_SITE_REGION CG34408 UPSTREAM CG34408 INTRON CG34408
2L	5557570	2L_5557570_SNP [dm3] 2L_5557570_SNP [dm6]	T	A	2.005e^-4	0.675	INTRON GluRIIA
3L	1564489	3L_1564489_SNP [dm3] 3L_1564489_SNP [dm6]	A	G	2.018e^-4	0.675	UPSTREAM CG12003 INTRON CG7879
3R	26618562	3R_26618562_INS [dm3] 3R_30792840_INS [dm6]	G	GGAG	2.026e^-4	0.675	CODON_INSERTION wts	TF binding site mE1_TFBS_chinmo
3L	1563864	3L_1563864_SNP [dm3] 3L_1563864_SNP [dm6]	A	G	2.030e^-4	0.675	INTRON CG7879	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	2645491	3L_2645491_SNP [dm3] 3L_2645491_SNP [dm6]	A	T	2.033e^-4	0.675	INTRON CG1143
2R	10382797	2R_10382797_SNP [dm3] 2R_14495292_SNP [dm6]	A	G	2.040e^-4	0.675	SYNONYMOUS_CODING L	TF binding site mE1_TFBS_cad
3L	13185081	3L_13185081_SNP [dm3] 3L_13191981_SNP [dm6]	T	C	2.042e^-4	0.675	INTERGENIC
X	13644610	X_13644610_SNP [dm3] X_13750577_SNP [dm6]	A	T	2.045e^-4	0.675	INTRON Pdcd4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19123045	2L_19123045_SNP [dm3] 2L_19123045_SNP [dm6]	C	G	2.047e^-4	0.675	DOWNSTREAM l_2_37Cb INTRON l_2_37Cc
X	22267450	X_22267450_SNP [dm3] X_22865614_SNP [dm6]	A	T	2.056e^-4	0.675	INTRON CG42346
2L	2519691	2L_2519691_SNP [dm3] 2L_2519691_SNP [dm6]	T	C	2.062e^-4	0.675	INTERGENIC
X	15264242	X_15264242_SNP [dm3] X_15370209_SNP [dm6]	T	C	2.064e^-4	0.675	INTRON acj6
2L	588391	2L_588391_SNP [dm3] 2L_588391_SNP [dm6]	A	C	2.065e^-4	0.675	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
3R	21495906	3R_21495906_SNP [dm3] 3R_25670184_SNP [dm6]	C	T	2.066e^-4	0.675	INTRON Lgr3
2R	12392227	2R_12392227_SNP [dm3] 2R_16504722_SNP [dm6]	G	C	2.068e^-4	0.675	INTRON Sema-2a
3R	25918976	3R_25918976_SNP [dm3] 3R_30093254_SNP [dm6]	C	T	2.072e^-4	0.675	INTRON sima
3R	18893923	3R_18893923_DEL [dm3] 3R_23068201_DEL [dm6]	CCA	C	2.073e^-4	0.675	UPSTREAM CG17111 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1733205	3L_1733205_SNP [dm3] 3L_1733205_SNP [dm6]	C	T	2.078e^-4	0.675	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26042041	3R_26042041_SNP [dm3] 3R_30216319_SNP [dm6]	C	T	2.079e^-4	0.675	UPSTREAM CecC INTERGENIC
X	8291487	X_8291487_SNP [dm3] X_8397454_SNP [dm6]	T	A	2.088e^-4	0.675	UTR_3_PRIME CG15345
2L	588419	2L_588419_SNP [dm3] 2L_588419_SNP [dm6]	T	A	2.090e^-4	0.675	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
3R	4349280	3R_4349280_SNP [dm3] 3R_8523558_SNP [dm6]	T	C	2.096e^-4	0.675	UPSTREAM CG31259 DOWNSTREAM CG31454 INTERGENIC
2R	14271099	2R_14271099_SNP [dm3] 2R_18383594_SNP [dm6]	G	A	2.097e^-4	0.675	UPSTREAM IM1 & 2 others INTERGENIC
3R	15077609	3R_15077609_SNP [dm3] 3R_19251887_SNP [dm6]	C	A	2.109e^-4	0.675	INTERGENIC
3L	12223155	3L_12223155_SNP [dm3] 3L_12230055_SNP [dm6]	A	T	2.111e^-4	0.675	INTRON app
2L	10565655	2L_10565655_SNP [dm3] 2L_10565655_SNP [dm6]	G	C	2.112e^-4	0.675	INTRON Trim9
2L	12896052	2L_12896052_SNP [dm3] 2L_12896052_SNP [dm6]	T	C	2.124e^-4	0.675	INTERGENIC
2R	5046394	2R_5046394_SNP [dm3] 2R_9158889_SNP [dm6]	T	A	2.126e^-4	0.675	SPLICE_SITE_REGION CG8008 INTRON CG8008
3R	2868309	3R_2868309_SNP [dm3] 3R_7042587_SNP [dm6]	G	A	2.130e^-4	0.675	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	13763940	2R_13763940_SNP [dm3] 2R_17876435_SNP [dm6]	G	A	2.134e^-4	0.675	INTRON Elk
2L	9133389	2L_9133389_SNP [dm3] 2L_9133389_SNP [dm6]	G	T	2.141e^-4	0.675	INTRON CG32982
2L	5446106	2L_5446106_SNP [dm3] 2L_5446106_SNP [dm6]	T	A	2.141e^-4	0.675	INTERGENIC
2L	5446128	2L_5446128_SNP [dm3] 2L_5446128_SNP [dm6]	T	A	2.141e^-4	0.675	INTERGENIC
2R	12510094	2R_12510094_SNP [dm3] 2R_16622589_SNP [dm6]	C	T	2.145e^-4	0.675	INTRON CG5065	TF binding site mE1_TFBS_cad
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	2.148e^-4	0.675	EXON CR44950
3R	12898269	3R_12898269_SNP [dm3] 3R_17072547_SNP [dm6]	T	A	2.157e^-4	0.675	UPSTREAM mRpS11 INTRON Ns1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10127793	2L_10127793_SNP [dm3] 2L_10127793_SNP [dm6]	A	T	2.176e^-4	0.675	SYNONYMOUS_CODING CG44153
X	7618967	X_7618967_SNP [dm3] X_7724934_SNP [dm6]	T	C	2.180e^-4	0.675	SYNONYMOUS_CODING Hira
2R	13723483	2R_13723483_SNP [dm3] 2R_17835978_SNP [dm6]	C	T	2.180e^-4	0.675	INTRON grh
X	10443026	X_10443026_SNP [dm3] X_10548993_SNP [dm6]	C	T	2.183e^-4	0.675	INTRON spri
2L	703091	2L_703091_SNP [dm3] 2L_703091_SNP [dm6]	A	T	2.189e^-4	0.675	INTRON ds	TF binding site BDTNP1_TFBS_dl
2L	17887868	2L_17887868_SNP [dm3] 2L_17887868_SNP [dm6]	A	T	2.193e^-4	0.675	INTERGENIC
2L	18348843	2L_18348843_SNP [dm3] 2L_18348843_SNP [dm6]	T	G	2.198e^-4	0.675	INTRON Fas3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9130332	2L_9130332_SNP [dm3] 2L_9130332_SNP [dm6]	T	A	2.205e^-4	0.675	INTRON CG32982	TF binding site BDTNP1_TFBS_twi
2R	9178834	2R_9178834_SNP [dm3] 2R_13291329_SNP [dm6]	T	C	2.208e^-4	0.675	INTRON Dh31-R	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18893945	3R_18893945_SNP [dm3] 3R_23068223_SNP [dm6]	G	A	2.215e^-4	0.675	UPSTREAM CG17111 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22437530	3R_22437530_SNP [dm3] 3R_26611808_SNP [dm6]	T	C	2.221e^-4	0.675	INTERGENIC
3R	27100474	3R_27100474_SNP [dm3] 3R_31274752_SNP [dm6]	T	C	2.221e^-4	0.675	INTERGENIC
3R	21776763	3R_21776763_SNP [dm3] 3R_25951041_SNP [dm6]	T	G	2.223e^-4	0.675	INTRON CCAP-R	TF binding site mE1_TFBS_inv
3L	13239973	3L_13239973_SNP [dm3] 3L_13246873_SNP [dm6]	T	A	2.226e^-4	0.675	UTR_3_PRIME CG32119 INTRON caps
3R	27130631	3R_27130631_SNP [dm3] 3R_31304909_SNP [dm6]	G	C	2.227e^-4	0.675	INTRON CG11340	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14517079	2L_14517079_SNP [dm3] 2L_14517079_SNP [dm6]	G	A	2.227e^-4	0.675	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	13473681	3L_13473681_SNP [dm3] 3L_13480581_SNP [dm6]	T	A	2.228e^-4	0.675	UTR_5_PRIME stv UPSTREAM stv INTRON stv
3R	25399142	3R_25399142_SNP [dm3] 3R_29573420_SNP [dm6]	T	C	2.229e^-4	0.675	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4242858	3L_4242858_SNP [dm3] 3L_4242858_SNP [dm6]	T	G	2.230e^-4	0.675	UTR_5_PRIME pav DOWNSTREAM CG14997	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	2765827	2L_2765827_SNP [dm3] 2L_2765827_SNP [dm6]	C	A	2.232e^-4	0.675	UPSTREAM aph-1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
X	4536298	X_4536298_SNP [dm3] X_4642265_SNP [dm6]	G	C	2.244e^-4	0.675	SYNONYMOUS_CODING CG3062 UTR_5_PRIME CG3081	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14181533	3R_14181533_SNP [dm3] 3R_18355811_SNP [dm6]	C	T	2.255e^-4	0.675	UTR_5_PRIME CG15803	TF binding site mE1_TFBS_chinmo
2R	14336095	2R_14336095_SNP [dm3] 2R_18448590_SNP [dm6]	T	G	2.259e^-4	0.675	SYNONYMOUS_CODING CG30120 UTR_3_PRIME CG5189 INTRON Prp19	TF binding site mE1_TFBS_cad
2L	9104800	2L_9104800_SNP [dm3] 2L_9104800_SNP [dm6]	C	T	2.272e^-4	0.675	INTERGENIC
2L	4796030	2L_4796030_SNP [dm3] 2L_4796030_SNP [dm6]	A	T	2.272e^-4	0.675	DOWNSTREAM Clect27 INTRON CG3294
3L	20721773	3L_20721773_SNP [dm3] 3L_20728673_SNP [dm6]	T	C	2.274e^-4	0.675	DOWNSTREAM CR43945 INTERGENIC
X	10543785	X_10543785_SNP [dm3] X_10649752_SNP [dm6]	T	C	2.276e^-4	0.675	INTRON X11Lbeta
2L	15760747	2L_15760747_SNP [dm3] 2L_15760747_SNP [dm6]	T	C	2.287e^-4	0.675	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
2R	18985665	2R_18985665_SNP [dm3] 2R_23098142_SNP [dm6]	T	G	2.287e^-4	0.675	INTERGENIC
3R	15072766	3R_15072766_INS [dm3] 3R_19247044_INS [dm6]	A	ACCATAACTTAGAGGACCA...	2.291e^-4	0.675	UPSTREAM unc79 DOWNSTREAM CG5217 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13216359	3L_13216359_DEL [dm3] 3L_13223259_DEL [dm6]	AAGCTGTTCAA...	A	2.294e^-4	0.675	INTERGENIC
2L	12213802	2L_12213802_SNP [dm3] 2L_12213802_SNP [dm6]	T	C	2.297e^-4	0.675	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4712167	3L_4712167_SNP [dm3] 3L_4712167_SNP [dm6]	G	A	2.297e^-4	0.675	INTRON RhoGEF64C
3R	15894745	3R_15894745_SNP [dm3] 3R_20069023_SNP [dm6]	G	A	2.297e^-4	0.675	INTERGENIC
2L	9133360	2L_9133360_SNP [dm3] 2L_9133360_SNP [dm6]	T	C	2.299e^-4	0.675	INTRON CG32982
2L	17324010	2L_17324010_SNP [dm3] 2L_17324010_SNP [dm6]	G	T	2.300e^-4	0.675	INTERGENIC
3R	26323003	3R_26323003_SNP [dm3] 3R_30497281_SNP [dm6]	A	C	2.305e^-4	0.675	INTRON PH4alphaNE1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18024627	3L_18024627_DEL [dm3] 3L_18031527_DEL [dm6]	TG	T	2.311e^-4	0.675	INTRON Eip75B
3L	4391241	3L_4391241_SNP [dm3] 3L_4391241_SNP [dm6]	A	T	2.311e^-4	0.675	INTRON slow	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18113375	3L_18113375_SNP [dm3] 3L_18120275_SNP [dm6]	G	C	2.312e^-4	0.675	SYNONYMOUS_CODING CG7341 DOWNSTREAM CG42853	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18636049	X_18636049_SNP [dm3] X_18742016_SNP [dm6]	G	A	2.317e^-4	0.675	INTERGENIC
3R	26659826	3R_26659826_SNP [dm3] 3R_30834104_SNP [dm6]	A	C	2.319e^-4	0.675	INTRON CG15544
2L	9125382	2L_9125382_SNP [dm3] 2L_9125382_SNP [dm6]	A	G	2.327e^-4	0.675	UPSTREAM CG32982 DOWNSTREAM CR44615 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	10915007	3L_10915007_SNP [dm3] 3L_10921907_SNP [dm6]	G	A	2.332e^-4	0.675	INTERGENIC
2L	2766398	2L_2766398_SNP [dm3] 2L_2766398_SNP [dm6]	T	C	2.333e^-4	0.675	SYNONYMOUS_CODING aph-1 UPSTREAM CG3077 DOWNSTREAM Taf10b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	21776756	3R_21776756_SNP [dm3] 3R_25951034_SNP [dm6]	T	A	2.336e^-4	0.675	INTRON CCAP-R	TF binding site mE1_TFBS_inv
2R	16289150	2R_16289150_SNP [dm3] 2R_20401645_SNP [dm6]	G	A	2.337e^-4	0.675	INTERGENIC
2L	17324015	2L_17324015_INS [dm3] 2L_17324015_INS [dm6]	A	AAA	2.344e^-4	0.675	INTERGENIC
3L	1730245	3L_1730245_SNP [dm3] 3L_1730245_SNP [dm6]	A	G	2.345e^-4	0.675	DOWNSTREAM Oseg4 INTRON drpr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	7366000	2L_7366000_SNP [dm3] 2L_7366000_SNP [dm6]	G	A	2.349e^-4	0.675	INTRON Wnt10
X	16609430	X_16609430_SNP [dm3] X_16715397_SNP [dm6]	A	T	2.352e^-4	0.675	INTRON CG34325
2R	14270955	2R_14270955_INS [dm3] 2R_18383450_INS [dm6]	A	AGTATACAAAAAGCAG...	2.353e^-4	0.675	UPSTREAM IM1 & 1 other INTERGENIC
2L	19697001	2L_19697001_SNP [dm3] 2L_19697001_SNP [dm6]	C	T	2.358e^-4	0.675	INTRON Lar	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	22135300	3R_22135300_SNP [dm3] 3R_26309578_SNP [dm6]	G	C	2.358e^-4	0.675	INTERGENIC
3R	8388326	3R_8388326_SNP [dm3] 3R_12562604_SNP [dm6]	C	T	2.358e^-4	0.675	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
X	11727403	X_11727403_SNP [dm3] X_11833370_SNP [dm6]	A	T	2.359e^-4	0.675	UTR_3_PRIME rudhira INTRON rudhira
3R	6948896	3R_6948896_SNP [dm3] 3R_11123174_SNP [dm6]	T	G	2.372e^-4	0.675	INTERGENIC
3R	24356548	3R_24356548_SNP [dm3] 3R_28530826_SNP [dm6]	A	G	2.376e^-4	0.675	SYNONYMOUS_CODING Ppn	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10131194	3L_10131194_SNP [dm3] 3L_10138094_SNP [dm6]	T	C	2.376e^-4	0.675	INTRON dpr6
X	14154318	X_14154318_SNP [dm3] X_14260285_SNP [dm6]	T	G	2.377e^-4	0.675	UPSTREAM CG1461 INTERGENIC
3R	21521755	3R_21521755_SNP [dm3] 3R_25696033_SNP [dm6]	G	A	2.381e^-4	0.675	INTERGENIC
2R	9147438	2R_9147438_SNP [dm3] 2R_13259933_SNP [dm6]	G	A	2.381e^-4	0.675	UPSTREAM CG42319 INTERGENIC
2R	14671796	2R_14671796_SNP [dm3] 2R_18784291_SNP [dm6]	G	A	2.383e^-4	0.675	INTRON CG15080	enhancer mE1_CBP_Enhancers
2L	4292783	2L_4292783_SNP [dm3] 2L_4292783_SNP [dm6]	A	G	2.384e^-4	0.675	INTRON tutl
3R	27130562	3R_27130562_SNP [dm3] 3R_31304840_SNP [dm6]	G	T	2.385e^-4	0.675	INTRON CG11340	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	3238864	2R_3238864_SNP [dm3] 2R_7351359_SNP [dm6]	A	T	2.387e^-4	0.675	INTRON Dscam1	TF binding site mE1_TFBS_inv
2L	7718985	2L_7718985_SNP [dm3] 2L_7718985_SNP [dm6]	T	A	2.391e^-4	0.675	SYNONYMOUS_CODING CG13793 DOWNSTREAM CG13794
X	16823982	X_16823982_SNP [dm3] X_16929949_SNP [dm6]	A	T	2.394e^-4	0.675	INTRON CG4928
3L	8253764	3L_8253764_SNP [dm3] 3L_8260664_SNP [dm6]	T	C	2.398e^-4	0.675	SYNONYMOUS_CODING Dscam4
2L	9595955	2L_9595955_SNP [dm3] 2L_9595955_SNP [dm6]	G	A	2.404e^-4	0.675	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4453045	X_4453045_SNP [dm3] X_4559012_SNP [dm6]	T	C	2.409e^-4	0.675	SYNONYMOUS_CODING CG3546 INTRON CR32773	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	684041	2L_684041_SNP [dm3] 2L_684041_SNP [dm6]	C	A	2.411e^-4	0.675	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19584230	2L_19584230_SNP [dm3] 2L_19584230_SNP [dm6]	T	A	2.413e^-4	0.675	UPSTREAM CG10366 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	27130557	3R_27130557_SNP [dm3] 3R_31304835_SNP [dm6]	T	A	2.417e^-4	0.675	INTRON CG11340	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4242865	3L_4242865_SNP [dm3] 3L_4242865_SNP [dm6]	A	G	2.419e^-4	0.675	UTR_5_PRIME pav DOWNSTREAM CG14997	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	4242869	3L_4242869_SNP [dm3] 3L_4242869_SNP [dm6]	G	A	2.419e^-4	0.675	UTR_5_PRIME pav DOWNSTREAM CG14997	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	653578	2L_653578_SNP [dm3] 2L_653578_SNP [dm6]	A	G	2.423e^-4	0.675	INTRON ds
2L	6271159	2L_6271159_SNP [dm3] 2L_6271159_SNP [dm6]	T	C	2.426e^-4	0.675	INTRON Ddr EXON CR42735
X	3217173	X_3217173_SNP [dm3] X_3323140_SNP [dm6]	C	T	2.428e^-4	0.675	INTRON CR44886 & 1 other
3L	711025	3L_711025_SNP [dm3] 3L_711025_SNP [dm6]	T	G	2.433e^-4	0.675	SYNONYMOUS_CODING CG13896 UPSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	24412419	3R_24412419_SNP [dm3] 3R_28586697_SNP [dm6]	G	A	2.439e^-4	0.675	EXON MRE23	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
X	18213780	X_18213780_SNP [dm3] X_18319747_SNP [dm6]	C	T	2.441e^-4	0.675	INTRON CG6023	transposable element FlyBase
X	14840917	X_14840917_SNP [dm3] X_14946884_SNP [dm6]	T	C	2.444e^-4	0.675	INTRON pdgy
3R	26183671	3R_26183671_SNP [dm3] 3R_30357949_SNP [dm6]	G	A	2.447e^-4	0.675	UTR_5_PRIME hdc INTRON hdc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9722004	3L_9722004_SNP [dm3] 3L_9728904_SNP [dm6]	A	C	2.447e^-4	0.675	UTR_3_PRIME Naa60 DOWNSTREAM Naa60
3L	12615764	3L_12615764_SNP [dm3] 3L_12622664_SNP [dm6]	T	A	2.449e^-4	0.675	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	19802421	2L_19802421_SNP [dm3] 2L_19802421_SNP [dm6]	A	C	2.450e^-4	0.675	INTRON sick
3L	4715335	3L_4715335_SNP [dm3] 3L_4715335_SNP [dm6]	T	C	2.452e^-4	0.675	INTRON RhoGEF64C
3L	18262635	3L_18262635_SNP [dm3] 3L_18269535_SNP [dm6]	T	A	2.455e^-4	0.675	INTERGENIC
3R	4350226	3R_4350226_SNP [dm3] 3R_8524504_SNP [dm6]	C	T	2.462e^-4	0.675	SYNONYMOUS_CODING CG31259 DOWNSTREAM CG31454
3L	3874495	3L_3874495_SNP [dm3] 3L_3874495_SNP [dm6]	T	C	2.462e^-4	0.675	INTERGENIC
3R	14351051	3R_14351051_SNP [dm3] 3R_18525329_SNP [dm6]	G	A	2.464e^-4	0.675	INTRON fru	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13225892	3L_13225892_SNP [dm3] 3L_13232792_SNP [dm6]	G	T	2.479e^-4	0.679	INTRON caps
3L	4232748	3L_4232748_SNP [dm3] 3L_4232748_SNP [dm6]	A	T	2.490e^-4	0.679	INTRON ImpL2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	4232751	3L_4232751_SNP [dm3] 3L_4232751_SNP [dm6]	A	C	2.490e^-4	0.679	INTRON ImpL2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	3719215	3R_3719215_SNP [dm3] 3R_7893493_SNP [dm6]	A	G	2.491e^-4	0.679	INTRON mRpS9 & 1 other
2R	7328465	2R_7328465_SNP [dm3] 2R_11440960_SNP [dm6]	T	A	2.499e^-4	0.68	INTRON CG7777
3L	1908661	3L_1908661_SNP [dm3] 3L_1908661_SNP [dm6]	A	G	2.505e^-4	0.68	INTRON CG1887
3R	21344585	3R_21344585_SNP [dm3] 3R_25518863_SNP [dm6]	G	T	2.508e^-4	0.68	INTRON msi	TF binding site mE1_TFBS_Trl
2L	2765779	2L_2765779_SNP [dm3] 2L_2765779_SNP [dm6]	G	A	2.508e^-4	0.68	UPSTREAM aph-1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
3L	2124148	3L_2124148_SNP [dm3] 3L_2124148_SNP [dm6]	A	G	2.515e^-4	0.68	INTRON zormin
3L	22844563	3L_22844563_SNP [dm3] 3L_22851463_SNP [dm6]	C	A	2.520e^-4	0.681	UPSTREAM CR43426 DOWNSTREAM CG32462 INTRON CR43426	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	17870058	2L_17870058_SNP [dm3] 2L_17870058_SNP [dm6]	G	A	2.533e^-4	0.682	INTRON CadN2	TF binding site mE1_TFBS_HSA
2R	3265898	2R_3265898_SNP [dm3] 2R_7378393_SNP [dm6]	C	A	2.534e^-4	0.682	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
2L	19123042	2L_19123042_SNP [dm3] 2L_19123042_SNP [dm6]	C	T	2.535e^-4	0.682	DOWNSTREAM l_2_37Cb INTRON l_2_37Cc
X	18636060	X_18636060_SNP [dm3] X_18742027_SNP [dm6]	G	T	2.542e^-4	0.683	INTERGENIC
2L	6735754	2L_6735754_SNP [dm3] 2L_6735754_SNP [dm6]	T	C	2.545e^-4	0.683	DOWNSTREAM TTLL3A INTRON TTLL3B	TF binding site BDTNP1_TFBS_twi
X	18381622	X_18381622_SNP [dm3] X_18487589_SNP [dm6]	G	A	2.558e^-4	0.684	UTR_3_PRIME CG15046 UPSTREAM psh
2R	14490671	2R_14490671_DEL [dm3] 2R_18603166_DEL [dm6]	AA	A	2.572e^-4	0.684	INTRON GEFmeso
3R	19382220	3R_19382220_SNP [dm3] 3R_23556498_SNP [dm6]	T	C	2.572e^-4	0.684	UTR_5_PRIME CG10164 UPSTREAM beat-IV
3L	13216309	3L_13216309_SNP [dm3] 3L_13223209_SNP [dm6]	T	C	2.580e^-4	0.684	INTERGENIC
3L	10408076	3L_10408076_SNP [dm3] 3L_10414976_SNP [dm6]	C	A	2.591e^-4	0.684	DOWNSTREAM CG12362 INTERGENIC
2R	8673635	2R_8673635_INS [dm3] 2R_12786130_INS [dm6]	G	GCAGCCGACTTTCAAAGCTA...	2.591e^-4	0.684	INTRON sca EXON CR45137	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4061715	2L_4061715_SNP [dm3] 2L_4061715_SNP [dm6]	A	G	2.592e^-4	0.684	INTRON ed
2L	5446131	2L_5446131_SNP [dm3] 2L_5446131_SNP [dm6]	T	C	2.592e^-4	0.684	INTERGENIC
2R	19503954	2R_19503954_SNP [dm3] 2R_23616431_SNP [dm6]	C	T	2.594e^-4	0.684	INTRON CG17664
X	20215260	X_20215260_SNP [dm3] X_20344233_SNP [dm6]	A	C	2.596e^-4	0.684	INTERGENIC	transposable element FlyBase
3L	18640926	3L_18640926_SNP [dm3] 3L_18647826_SNP [dm6]	G	A	2.596e^-4	0.684	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_twi
3R	3960697	3R_3960697_SNP [dm3] 3R_8134975_SNP [dm6]	A	T	2.598e^-4	0.684	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10331750	3L_10331750_INS [dm3] 3L_10338650_INS [dm6]	A	AA	2.602e^-4	0.684	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	20410311	3R_20410311_SNP [dm3] 3R_24584589_SNP [dm6]	A	T	2.605e^-4	0.684	NON_SYNONYMOUS_CODING CG13625	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
X	7893910	X_7893910_SNP [dm3] X_7999877_SNP [dm6]	T	C	2.608e^-4	0.684	INTRON Tbh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17880384	2L_17880384_SNP [dm3] 2L_17880384_SNP [dm6]	G	T	2.611e^-4	0.684	INTERGENIC
3R	17032035	3R_17032035_SNP [dm3] 3R_21206313_SNP [dm6]	G	A	2.617e^-4	0.684	INTRON SNF4Agamma	TF binding site mE1_TFBS_Trl
2L	1383805	2L_1383805_SNP [dm3] 2L_1383805_SNP [dm6]	G	C	2.621e^-4	0.684	INTRON lea
3R	24844274	3R_24844274_SNP [dm3] 3R_29018552_SNP [dm6]	C	A	2.622e^-4	0.684	INTRON wat
3R	24847844	3R_24847844_SNP [dm3] 3R_29022122_SNP [dm6]	A	G	2.622e^-4	0.684	UPSTREAM CR45567 EXON CR44264
2L	8619047	2L_8619047_SNP [dm3] 2L_8619047_SNP [dm6]	C	T	2.648e^-4	0.69	UPSTREAM tRNA:CR31602 INTRON Sema-1a
3L	4242833	3L_4242833_SNP [dm3] 3L_4242833_SNP [dm6]	C	A	2.655e^-4	0.69	UTR_5_PRIME pav DOWNSTREAM CG14997	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	19126952	3R_19126952_SNP [dm3] 3R_23301230_SNP [dm6]	G	A	2.656e^-4	0.69	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6601300	2L_6601300_SNP [dm3] 2L_6601300_SNP [dm6]	T	A	2.661e^-4	0.69	UPSTREAM CG11319 INTERGENIC
X	18262665	X_18262665_SNP [dm3] X_18368632_SNP [dm6]	T	G	2.673e^-4	0.69	INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	20262267	X_20262267_SNP [dm3] X_20391240_SNP [dm6]	A	G	2.680e^-4	0.69	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14678339	2R_14678339_SNP [dm3] 2R_18790834_SNP [dm6]	C	T	2.681e^-4	0.69	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25278004	3R_25278004_INS [dm3] 3R_29452282_INS [dm6]	T	TT	2.685e^-4	0.69	INTRON Ptp99A
2R	14087322	2R_14087322_SNP [dm3] 2R_18199817_SNP [dm6]	C	A	2.685e^-4	0.69	INTERGENIC
3R	10575123	3R_10575123_SNP [dm3] 3R_14749401_SNP [dm6]	C	G	2.699e^-4	0.69	UPSTREAM jvl & 1 other INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
X	7624038	X_7624038_SNP [dm3] X_7730005_SNP [dm6]	C	A	2.700e^-4	0.69	SYNONYMOUS_CODING CG12155	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18947961	2R_18947961_SNP [dm3] 2R_23060438_SNP [dm6]	G	A	2.716e^-4	0.69	SYNONYMOUS_CODING CG44252 DOWNSTREAM l_2_06496	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7328464	2R_7328464_SNP [dm3] 2R_11440959_SNP [dm6]	T	C	2.718e^-4	0.69	INTRON CG7777
X	9489608	X_9489608_SNP [dm3] X_9595575_SNP [dm6]	G	A	2.718e^-4	0.69	DOWNSTREAM CR45543 INTERGENIC
2L	15303443	2L_15303443_SNP [dm3] 2L_15303443_SNP [dm6]	C	T	2.726e^-4	0.69	INTERGENIC
X	2926747	X_2926747_SNP [dm3] X_3032714_SNP [dm6]	G	A	2.729e^-4	0.69	INTRON kirre
3L	4841509	3L_4841509_SNP [dm3] 3L_4841509_SNP [dm6]	C	T	2.734e^-4	0.69	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	12392811	2R_12392811_SNP [dm3] 2R_16505306_SNP [dm6]	C	A	2.736e^-4	0.69	INTRON Sema-2a
2L	2460597	2L_2460597_SNP [dm3] 2L_2460597_SNP [dm6]	T	C	2.737e^-4	0.69	UPSTREAM tRNA:Y1:22Fb DOWNSTREAM dpp INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	11735412	3L_11735412_SNP [dm3] 3L_11742312_SNP [dm6]	T	G	2.739e^-4	0.69	INTRON CG6024
3L	1563665	3L_1563665_DEL [dm3] 3L_1563665_DEL [dm6]	AGATATGCATTCTGGA...	A	2.741e^-4	0.69	INTRON CG7879
3L	1563703	3L_1563703_DEL [dm3] 3L_1563703_DEL [dm6]	GAT	C	2.741e^-4	0.69	INTRON CG7879
3L	9735039	3L_9735039_SNP [dm3] 3L_9741939_SNP [dm6]	A	T	2.746e^-4	0.69	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19504762	2R_19504762_SNP [dm3] 2R_23617239_SNP [dm6]	G	A	2.748e^-4	0.69	UPSTREAM CG17664 INTERGENIC	TF binding site mE1_TFBS_sens
3L	1563604	3L_1563604_SNP [dm3] 3L_1563604_SNP [dm6]	G	T	2.753e^-4	0.69	INTRON CG7879
3L	11348019	3L_11348019_SNP [dm3] 3L_11354919_SNP [dm6]	G	A	2.756e^-4	0.69	INTERGENIC
X	13934392	X_13934392_SNP [dm3] X_14040359_SNP [dm6]	G	C	2.759e^-4	0.69	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17302634	2L_17302634_SNP [dm3] 2L_17302634_SNP [dm6]	A	G	2.760e^-4	0.69	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	5433727	X_5433727_SNP [dm3] X_5539694_SNP [dm6]	G	A	2.760e^-4	0.69	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_inv
X	14805742	X_14805742_INS [dm3] X_14911709_INS [dm6]	C	CTCTC	2.761e^-4	0.69	UPSTREAM CG14406 DOWNSTREAM CG12398 INTRON Flo2
2R	19508715	2R_19508715_SNP [dm3] 2R_23621192_SNP [dm6]	C	T	2.761e^-4	0.69	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16432980	3L_16432980_SNP [dm3] 3L_16439880_SNP [dm6]	A	T	2.770e^-4	0.69	INTRON CG33158 & 1 other
2L	4867035	2L_4867035_DEL [dm3] 2L_4867035_DEL [dm6]	GTCG	G	2.771e^-4	0.69	INTRON pog
2R	11745379	2R_11745379_SNP [dm3] 2R_15857874_SNP [dm6]	T	A	2.775e^-4	0.69	UTR_3_PRIME Gpo-1 DOWNSTREAM CG12970
3L	13176658	3L_13176658_SNP [dm3] 3L_13183558_SNP [dm6]	T	C	2.775e^-4	0.69	INTERGENIC
3L	17891665	3L_17891665_SNP [dm3] 3L_17898565_SNP [dm6]	G	A	2.781e^-4	0.69	DOWNSTREAM Prestin INTERGENIC
2L	1986147	2L_1986147_SNP [dm3] 2L_1986147_SNP [dm6]	C	T	2.784e^-4	0.69	INTRON Got2
2R	13231432	2R_13231432_SNP [dm3] 2R_17343927_SNP [dm6]	C	T	2.806e^-4	0.693	INTRON mbl
2R	12389779	2R_12389779_SNP [dm3] 2R_16502274_SNP [dm6]	A	G	2.814e^-4	0.693	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4054267	2L_4054267_SNP [dm3] 2L_4054267_SNP [dm6]	T	C	2.814e^-4	0.693	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	16983476	3L_16983476_SNP [dm3] 3L_16990376_SNP [dm6]	C	T	2.820e^-4	0.693	INTRON Exn
3R	14771287	3R_14771287_SNP [dm3] 3R_18945565_SNP [dm6]	C	A	2.821e^-4	0.693	INTRON CG42613
2R	6796209	2R_6796209_SNP [dm3] 2R_10908704_SNP [dm6]	T	C	2.832e^-4	0.693	INTERGENIC
3R	15894772	3R_15894772_DEL [dm3] 3R_20069050_DEL [dm6]	GG	A	2.832e^-4	0.693	INTERGENIC
2L	19123030	2L_19123030_SNP [dm3] 2L_19123030_SNP [dm6]	A	T	2.838e^-4	0.693	DOWNSTREAM l_2_37Cb INTRON l_2_37Cc
3R	24838178	3R_24838178_SNP [dm3] 3R_29012456_SNP [dm6]	C	G	2.843e^-4	0.693	INTRON wat
2L	6499760	2L_6499760_SNP [dm3] 2L_6499760_SNP [dm6]	G	A	2.849e^-4	0.693	SYNONYMOUS_CODING CG31637	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	566536	2L_566536_SNP [dm3] 2L_566536_SNP [dm6]	A	G	2.850e^-4	0.693	SYNONYMOUS_CODING Nle DOWNSTREAM CG2794	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11337397	2L_11337397_SNP [dm3] 2L_11337397_SNP [dm6]	G	T	2.854e^-4	0.693	INTERGENIC
3L	2645067	3L_2645067_SNP [dm3] 3L_2645067_SNP [dm6]	C	T	2.855e^-4	0.693	UPSTREAM CG1143 INTERGENIC
3L	4556656	3L_4556656_SNP [dm3] 3L_4556656_SNP [dm6]	C	G	2.856e^-4	0.693	UPSTREAM CG42540 INTRON CG42540
X	13095626	X_13095626_SNP [dm3] X_13201593_SNP [dm6]	A	C	2.858e^-4	0.693	NON_SYNONYMOUS_CODING CG44437 INTRON sno	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	12806871	2R_12806871_SNP [dm3] 2R_16919366_SNP [dm6]	T	C	2.861e^-4	0.693	INTERGENIC
3R	17713182	3R_17713182_SNP [dm3] 3R_21887460_SNP [dm6]	G	T	2.862e^-4	0.693	UTR_5_PRIME CG6678 UPSTREAM dnd
3L	13317212	3L_13317212_SNP [dm3] 3L_13324112_SNP [dm6]	T	C	2.864e^-4	0.693	DOWNSTREAM CR44558 INTERGENIC
3L	16983486	3L_16983486_SNP [dm3] 3L_16990386_SNP [dm6]	A	G	2.864e^-4	0.693	INTRON Exn
3L	5982580	3L_5982580_SNP [dm3] 3L_5989480_SNP [dm6]	T	A	2.875e^-4	0.694	INTERGENIC
2R	11128680	2R_11128680_INS [dm3] 2R_15241175_INS [dm6]	T	TAAGCT	2.877e^-4	0.694	INTRON Fs
3L	13216403	3L_13216403_SNP [dm3] 3L_13223303_SNP [dm6]	C	T	2.886e^-4	0.694	INTERGENIC
3R	26618592	3R_26618592_SNP [dm3] 3R_30792870_SNP [dm6]	T	C	2.891e^-4	0.694	SYNONYMOUS_CODING wts	TF binding site mE1_TFBS_chinmo
2L	9104792	2L_9104792_SNP [dm3] 2L_9104792_SNP [dm6]	A	G	2.892e^-4	0.694	INTERGENIC
3R	25593455	3R_25593455_SNP [dm3] 3R_29767733_SNP [dm6]	T	C	2.894e^-4	0.694	INTRON kay	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	13317165	3L_13317165_SNP [dm3] 3L_13324065_SNP [dm6]	C	T	2.895e^-4	0.694	DOWNSTREAM CR44558 INTERGENIC
2R	13092522	2R_13092522_SNP [dm3] 2R_17205017_SNP [dm6]	C	A	2.901e^-4	0.695	UPSTREAM CG43237 INTERGENIC
2L	13736384	2L_13736384_SNP [dm3] 2L_13736384_SNP [dm6]	G	A	2.912e^-4	0.696	SYNONYMOUS_CODING CG31813	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19802424	2L_19802424_SNP [dm3] 2L_19802424_SNP [dm6]	A	T	2.915e^-4	0.696	INTRON sick
2R	10991687	2R_10991687_SNP [dm3] 2R_15104182_SNP [dm6]	G	T	2.917e^-4	0.696	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	17321363	X_17321363_SNP [dm3] X_17427330_SNP [dm6]	A	C	2.920e^-4	0.696	INTRON CG12994 & 1 other	TF binding site mE1_TFBS_D
2R	8951325	2R_8951325_SNP [dm3] 2R_13063820_SNP [dm6]	C	T	2.927e^-4	0.696	INTRON Drl-2
3L	1731091	3L_1731091_SNP [dm3] 3L_1731091_SNP [dm6]	C	T	2.937e^-4	0.697	UTR_5_PRIME drpr UTR_3_PRIME Oseg4 DOWNSTREAM Oseg4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16972442	3L_16972442_SNP [dm3] 3L_16979342_SNP [dm6]	G	T	2.941e^-4	0.697	INTRON Exn
2L	3795179	2L_3795179_SNP [dm3] 2L_3795179_SNP [dm6]	G	A	2.943e^-4	0.697	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5705590	3L_5705590_SNP [dm3] 3L_5712490_SNP [dm6]	A	G	2.944e^-4	0.697	UPSTREAM CG44521 INTRON sif	TF binding site mE1_TFBS_chinmo
X	13644606	X_13644606_INS [dm3] X_13750573_INS [dm6]	A	AA	2.977e^-4	0.702	INTRON Pdcd4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10233208	2R_10233208_SNP [dm3] 2R_14345703_SNP [dm6]	C	T	2.981e^-4	0.702	INTRON Shroom
3L	1731239	3L_1731239_INS [dm3] 3L_1731239_INS [dm6]	T	TGT	2.982e^-4	0.702	UTR_3_PRIME Oseg4 UPSTREAM drpr DOWNSTREAM Oseg4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	5463187	3R_5463187_SNP [dm3] 3R_9637465_SNP [dm6]	T	G	2.989e^-4	0.702	UTR_5_PRIME Scm UPSTREAM Dh44	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3L	18720550	3L_18720550_SNP [dm3] 3L_18727450_SNP [dm6]	A	G	2.989e^-4	0.702	INTERGENIC
3L	9385226	3L_9385226_SNP [dm3] 3L_9392126_SNP [dm6]	T	A	2.990e^-4	0.702	INTRON CG4080	TF binding site mE1_TFBS_HSA
2L	17861786	2L_17861786_SNP [dm3] 2L_17861786_SNP [dm6]	A	C	2.993e^-4	0.702	INTRON CadN2
2L	17297572	2L_17297572_SNP [dm3] 2L_17297572_SNP [dm6]	T	C	2.994e^-4	0.702	INTERGENIC
3R	5448622	3R_5448622_SNP [dm3] 3R_9622900_SNP [dm6]	G	T	3.005e^-4	0.702	UPSTREAM CG8312 INTRON CG8312	TF binding site mE1_TFBS_cad
2R	7482896	2R_7482896_SNP [dm3] 2R_11595391_SNP [dm6]	A	C	3.012e^-4	0.702	INTRON tou	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	17285321	2L_17285321_SNP [dm3] 2L_17285321_SNP [dm6]	C	G	3.014e^-4	0.702	UPSTREAM CG15140 INTERGENIC	TF binding site mE1_TFBS_inv
X	13095658	X_13095658_SNP [dm3] X_13201625_SNP [dm6]	C	T	3.021e^-4	0.702	SYNONYMOUS_CODING CG44437 INTRON sno	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	7483815	3L_7483815_SNP [dm3] 3L_7490715_SNP [dm6]	G	T	3.023e^-4	0.702	INTERGENIC
3R	11511634	3R_11511634_SNP [dm3] 3R_15685912_SNP [dm6]	T	A	3.026e^-4	0.702	INTRON pxb	TF binding site BDTNP1_TFBS_hb
2L	19123072	2L_19123072_SNP [dm3] 2L_19123072_SNP [dm6]	A	T	3.029e^-4	0.702	DOWNSTREAM l_2_37Cb INTRON l_2_37Cc
3L	440017	3L_440017_SNP [dm3] 3L_440017_SNP [dm6]	T	C	3.031e^-4	0.702	INTRON klar
2L	17285832	2L_17285832_INS [dm3] 2L_17285832_INS [dm6]	C	CATC	3.035e^-4	0.702	UPSTREAM CG15140 INTERGENIC	TF binding site mE1_TFBS_inv
3R	10434567	3R_10434567_SNP [dm3] 3R_14608845_SNP [dm6]	C	T	3.035e^-4	0.702	UPSTREAM CG14853 DOWNSTREAM stumps INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2081089	2L_2081089_SNP [dm3] 2L_2081089_SNP [dm6]	C	T	3.040e^-4	0.702	UPSTREAM CR44808 INTRON dpr3 & 1 other
3R	25434053	3R_25434053_SNP [dm3] 3R_29608331_SNP [dm6]	C	A	3.041e^-4	0.702	UPSTREAM Diedel2 INTRON alph
2L	3069681	2L_3069681_SNP [dm3] 2L_3069681_SNP [dm6]	A	G	3.047e^-4	0.703	SYNONYMOUS_CODING toc UTR_3_PRIME toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13679022	3L_13679022_SNP [dm3] 3L_13685922_SNP [dm6]	C	T	3.060e^-4	0.704	INTRON bru-3
X	11756868	X_11756868_SNP [dm3] X_11862835_SNP [dm6]	G	T	3.062e^-4	0.704	SYNONYMOUS_CODING ATP7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12148122	3L_12148122_SNP [dm3] 3L_12155022_SNP [dm6]	C	T	3.068e^-4	0.705	SYNONYMOUS_CODING Nrx-IV	TF binding site mE1_TFBS_sens
3R	13682812	3R_13682812_SNP [dm3] 3R_17857090_SNP [dm6]	G	C	3.071e^-4	0.705	INTRON tinc
3R	25027096	3R_25027096_SNP [dm3] 3R_29201374_SNP [dm6]	C	T	3.076e^-4	0.705	DOWNSTREAM Mesh1 INTRON CG11899	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13302646	3L_13302646_SNP [dm3] 3L_13309546_SNP [dm6]	T	C	3.083e^-4	0.706	INTERGENIC
3L	4238987	3L_4238987_SNP [dm3] 3L_4238987_SNP [dm6]	C	T	3.100e^-4	0.708	INTERGENIC
3R	5448600	3R_5448600_DEL [dm3] 3R_9622878_DEL [dm6]	ATACGCATGA	A	3.108e^-4	0.708	UPSTREAM CG8312 INTRON CG8312	TF binding site mE1_TFBS_cad
3R	20958085	3R_20958085_SNP [dm3] 3R_25132363_SNP [dm6]	A	T	3.108e^-4	0.708	UTR_5_PRIME Bili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9147435	2R_9147435_SNP [dm3] 2R_13259930_SNP [dm6]	T	A	3.141e^-4	0.708	UPSTREAM CG42319 INTERGENIC
2R	9958271	2R_9958271_SNP [dm3] 2R_14070766_SNP [dm6]	A	G	3.143e^-4	0.708	INTRON Prosap
2R	9958274	2R_9958274_SNP [dm3] 2R_14070769_SNP [dm6]	T	A	3.143e^-4	0.708	INTRON Prosap
3L	2645081	3L_2645081_SNP [dm3] 3L_2645081_SNP [dm6]	A	G	3.148e^-4	0.708	UPSTREAM CG1143 INTERGENIC
2R	13196807	2R_13196807_SNP [dm3] 2R_17309302_SNP [dm6]	G	C	3.149e^-4	0.708	INTRON mbl
3L	18024626	3L_18024626_SNP [dm3] 3L_18031526_SNP [dm6]	T	G	3.152e^-4	0.708	INTRON Eip75B
3L	13310084	3L_13310084_DEL [dm3] 3L_13316984_DEL [dm6]	TA	T	3.154e^-4	0.708	INTERGENIC
X	20215452	X_20215452_INS [dm3] X_20344425_INS [dm6]	AC	TTATGCCG	3.154e^-4	0.708	INTERGENIC
2L	7209138	2L_7209138_SNP [dm3] 2L_7209138_SNP [dm6]	A	C	3.158e^-4	0.708	INTRON CG13784
X	19995843	X_19995843_SNP [dm3] X_20101810_SNP [dm6]	T	A	3.162e^-4	0.708	INTERGENIC	transposable element FlyBase
3R	11110205	3R_11110205_DEL [dm3] 3R_15284483_DEL [dm6]	GG	G	3.163e^-4	0.708	INTRON Tm1
3L	1103352	3L_1103352_INS [dm3] 3L_1103352_INS [dm6]	T	TGTAT	3.167e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	9353049	3L_9353049_SNP [dm3] 3L_9359949_SNP [dm6]	C	A	3.174e^-4	0.708	UTR_3_PRIME CG32039 UPSTREAM CG34455 DOWNSTREAM CG32039	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
3L	16635148	3L_16635148_SNP [dm3] 3L_16642048_SNP [dm6]	G	T	3.183e^-4	0.708	INTRON Abl
2R	20935015	2R_20935015_SNP [dm3] 2R_25047492_SNP [dm6]	C	G	3.187e^-4	0.708	INTRON gsb-n	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
3L	7247861	3L_7247861_SNP [dm3] 3L_7254761_SNP [dm6]	G	A	3.199e^-4	0.708	INTRON CG14830
2R	9105766	2R_9105766_SNP [dm3] 2R_13218261_SNP [dm6]	A	T	3.202e^-4	0.708	UTR_5_PRIME CG4630 INTRON CG4630	TF binding site mE1_TFBS_cad
X	5010208	X_5010208_SNP [dm3] X_5116175_SNP [dm6]	T	G	3.208e^-4	0.708	INTRON rg & 1 other
3L	14931260	3L_14931260_SNP [dm3] 3L_14938160_SNP [dm6]	G	C	3.211e^-4	0.708	INTRON DCX-EMAP
3L	8419001	3L_8419001_SNP [dm3] 3L_8425901_SNP [dm6]	T	C	3.217e^-4	0.708	INTRON Cbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	711035	3L_711035_SNP [dm3] 3L_711035_SNP [dm6]	A	G	3.218e^-4	0.708	SYNONYMOUS_CODING CG13896 UPSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2R	14448722	2R_14448722_SNP [dm3] 2R_18561217_SNP [dm6]	A	G	3.242e^-4	0.708	INTRON GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	18548549	2R_18548549_SNP [dm3] 2R_22661044_SNP [dm6]	T	A	3.244e^-4	0.708	UPSTREAM CG42566 DOWNSTREAM CG13511 INTRON CG42565 & 2 others	TF binding site mE1_TFBS_cad
2L	17878645	2L_17878645_SNP [dm3] 2L_17878645_SNP [dm6]	G	C	3.244e^-4	0.708	INTERGENIC
3R	26618196	3R_26618196_SNP [dm3] 3R_30792474_SNP [dm6]	C	T	3.244e^-4	0.708	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
2R	19504761	2R_19504761_SNP [dm3] 2R_23617238_SNP [dm6]	T	C	3.245e^-4	0.708	UPSTREAM CG17664 INTERGENIC	TF binding site mE1_TFBS_sens
2R	17641407	2R_17641407_SNP [dm3] 2R_21753902_SNP [dm6]	C	A	3.249e^-4	0.708	INTERGENIC
2L	4512888	2L_4512888_SNP [dm3] 2L_4512888_SNP [dm6]	G	A	3.255e^-4	0.708	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24926199	3R_24926199_SNP [dm3] 3R_29100477_SNP [dm6]	C	T	3.257e^-4	0.708	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18494639	3R_18494639_SNP [dm3] 3R_22668917_SNP [dm6]	T	G	3.257e^-4	0.708	INTRON CG45058	TF binding site BDTNP1_TFBS_dl
3L	14925605	3L_14925605_SNP [dm3] 3L_14932505_SNP [dm6]	T	G	3.258e^-4	0.708	INTRON DCX-EMAP
X	16685557	X_16685557_SNP [dm3] X_16791524_SNP [dm6]	T	A	3.264e^-4	0.708	UPSTREAM CG4768 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	12237903	3R_12237903_SNP [dm3] 3R_16412181_SNP [dm6]	G	T	3.266e^-4	0.708	INTERGENIC
2L	2435443	2L_2435443_SNP [dm3] 2L_2435443_SNP [dm6]	G	T	3.272e^-4	0.708	INTRON dpp	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	27136537	3R_27136537_SNP [dm3] 3R_31310815_SNP [dm6]	G	C	3.272e^-4	0.708	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	2646631	3L_2646631_SNP [dm3] 3L_2646631_SNP [dm6]	T	A	3.273e^-4	0.708	UTR_3_PRIME CG1143 DOWNSTREAM CG1143	TF binding site mE1_TFBS_cad
3R	4358814	3R_4358814_SNP [dm3] 3R_8533092_SNP [dm6]	G	C	3.275e^-4	0.708	INTERGENIC
X	10088381	X_10088381_SNP [dm3] X_10194348_SNP [dm6]	C	A	3.279e^-4	0.708	UTR_3_PRIME CG43902 INTRON CR44894
2R	8864267	2R_8864267_SNP [dm3] 2R_12976762_SNP [dm6]	T	C	3.282e^-4	0.708	INTRON Psc	TF binding site mE1_TFBS_HSA
3R	24485802	3R_24485802_SNP [dm3] 3R_28660080_SNP [dm6]	A	G	3.291e^-4	0.708	INTERGENIC
3R	23156595	3R_23156595_SNP [dm3] 3R_27330873_SNP [dm6]	C	A	3.291e^-4	0.708	UTR_5_PRIME CG3330
X	17656576	X_17656576_SNP [dm3] X_17762543_SNP [dm6]	G	A	3.296e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8158193	3L_8158193_SNP [dm3] 3L_8165093_SNP [dm6]	C	T	3.299e^-4	0.708	UPSTREAM CG13675 INTRON CG13675
2L	9133371	2L_9133371_SNP [dm3] 2L_9133371_SNP [dm6]	C	G	3.304e^-4	0.708	INTRON CG32982
3L	13679056	3L_13679056_SNP [dm3] 3L_13685956_SNP [dm6]	A	G	3.307e^-4	0.708	INTRON bru-3
3L	4534212	3L_4534212_SNP [dm3] 3L_4534212_SNP [dm6]	G	T	3.310e^-4	0.708	INTRON CG11353
3L	12712148	3L_12712148_SNP [dm3] 3L_12719048_SNP [dm6]	T	C	3.310e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_Kr
3L	15625591	3L_15625591_INS [dm3] 3L_15632491_INS [dm6]	T	TT	3.317e^-4	0.708	UTR_5_PRIME comm3 INTRON comm3
2L	17886679	2L_17886679_SNP [dm3] 2L_17886679_SNP [dm6]	A	T	3.323e^-4	0.708	INTERGENIC
2L	16163524	2L_16163524_SNP [dm3] 2L_16163524_SNP [dm6]	C	A	3.324e^-4	0.708	INTERGENIC
3R	4606495	3R_4606495_SNP [dm3] 3R_8780773_SNP [dm6]	T	C	3.324e^-4	0.708	UTR_5_PRIME CG33189 UPSTREAM CG33191 & 1 other DOWNSTREAM Pif1A INTRON Pif1B & 1 other	TF binding site mE1_TFBS_cad
3L	4649544	3L_4649544_SNP [dm3] 3L_4649544_SNP [dm6]	G	A	3.330e^-4	0.708	SYNONYMOUS_CODING CG32238 INTRON axo	TF binding site BDTNP1_TFBS_prd
3R	21990412	3R_21990412_SNP [dm3] 3R_26164690_SNP [dm6]	G	C	3.338e^-4	0.708	INTERGENIC
2R	20946369	2R_20946369_SNP [dm3] 2R_25058846_SNP [dm6]	C	T	3.341e^-4	0.708	INTERGENIC	regulatory region FlyBase REDfly_CRMs
X	10030942	X_10030942_SNP [dm3] X_10136909_SNP [dm6]	C	T	3.345e^-4	0.708	INTRON CR44894 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14975334	3R_14975334_SNP [dm3] 3R_19149612_SNP [dm6]	G	A	3.350e^-4	0.708	SYNONYMOUS_CODING CG5835 DOWNSTREAM CR44107
X	6477081	X_6477081_SNP [dm3] X_6583048_SNP [dm6]	G	T	3.365e^-4	0.708	SYNONYMOUS_CODING CG34417 INTRON CG34417
3R	27146681	3R_27146681_SNP [dm3] 3R_31320959_SNP [dm6]	C	A	3.367e^-4	0.708	INTRON CG34347
2R	18278141	2R_18278141_SNP [dm3] 2R_22390636_SNP [dm6]	C	A	3.369e^-4	0.708	INTRON CG13506
X	14678764	X_14678764_SNP [dm3] X_14784731_SNP [dm6]	A	C	3.371e^-4	0.708	UTR_3_PRIME Ag5r UPSTREAM Ag5r2 DOWNSTREAM Ag5r
2L	17891596	2L_17891596_SNP [dm3] 2L_17891596_SNP [dm6]	C	T	3.372e^-4	0.708	INTERGENIC
2L	3282531	2L_3282531_SNP [dm3] 2L_3282531_SNP [dm6]	T	C	3.375e^-4	0.708	INTERGENIC
2R	9343877	2R_9343877_SNP [dm3] 2R_13456372_SNP [dm6]	A	T	3.376e^-4	0.708	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_cad
2L	19859357	2L_19859357_SNP [dm3] 2L_19859357_SNP [dm6]	T	G	3.378e^-4	0.708	INTRON sick
X	5702342	X_5702342_SNP [dm3] X_5808309_SNP [dm6]	G	A	3.380e^-4	0.708	UPSTREAM Prosbeta2R1 INTERGENIC
2L	702432	2L_702432_SNP [dm3] 2L_702432_SNP [dm6]	C	A	3.382e^-4	0.708	INTRON ds	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	25412689	3R_25412689_SNP [dm3] 3R_29586967_SNP [dm6]	C	T	3.385e^-4	0.708	DOWNSTREAM CG7567 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	17337810	3L_17337810_SNP [dm3] 3L_17344710_SNP [dm6]	A	G	3.386e^-4	0.708	UPSTREAM brv2 DOWNSTREAM Mip INTERGENIC
3L	13924066	3L_13924066_SNP [dm3] 3L_13930966_SNP [dm6]	G	A	3.388e^-4	0.708	NON_SYNONYMOUS_CODING Gl	TF binding site mE1_TFBS_cad
2R	19726701	2R_19726701_SNP [dm3] 2R_23839178_SNP [dm6]	C	T	3.390e^-4	0.708	UTR_3_PRIME CG5549 DOWNSTREAM snoRNA:Psi18S-176
2L	12207912	2L_12207912_SNP [dm3] 2L_12207912_SNP [dm6]	A	G	3.393e^-4	0.708	START_GAINED CG31759 UTR_5_PRIME CG31759 UPSTREAM CG31759 INTRON aret
2L	7244417	2L_7244417_SNP [dm3] 2L_7244417_SNP [dm6]	G	A	3.394e^-4	0.708	INTRON Ndae1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	14271088	2R_14271088_DEL [dm3] 2R_18383583_DEL [dm6]	TAT	T	3.400e^-4	0.708	UPSTREAM IM1 & 2 others INTERGENIC
2L	735370	2L_735370_SNP [dm3] 2L_735370_SNP [dm6]	C	G	3.400e^-4	0.708	INTERGENIC
2R	11976055	2R_11976055_SNP [dm3] 2R_16088550_SNP [dm6]	C	A	3.405e^-4	0.708	INTRON Dg
2L	15090517	2L_15090517_SNP [dm3] 2L_15090517_SNP [dm6]	A	G	3.406e^-4	0.708	INTRON CG15270
2L	9104742	2L_9104742_DEL [dm3] 2L_9104742_DEL [dm6]	CTA	C	3.410e^-4	0.708	INTERGENIC
2R	11177864	2R_11177864_SNP [dm3] 2R_15290359_SNP [dm6]	A	G	3.412e^-4	0.708	INTRON Trpm
X	6451852	X_6451852_SNP [dm3] X_6557819_SNP [dm6]	G	C	3.416e^-4	0.708	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
2L	19577867	2L_19577867_SNP [dm3] 2L_19577867_SNP [dm6]	C	A	3.421e^-4	0.708	NON_SYNONYMOUS_CODING msb1l UPSTREAM spi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
3R	25125888	3R_25125888_SNP [dm3] 3R_29300166_SNP [dm6]	C	A	3.426e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
X	9651658	X_9651658_SNP [dm3] X_9757625_SNP [dm6]	A	G	3.435e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	7623480	X_7623480_SNP [dm3] X_7729447_SNP [dm6]	A	G	3.443e^-4	0.708	INTRON CG12155	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	10178765	3R_10178765_SNP [dm3] 3R_14353043_SNP [dm6]	A	C	3.454e^-4	0.708	INTRON NK7.1
X	10571315	X_10571315_SNP [dm3] X_10677282_SNP [dm6]	C	T	3.459e^-4	0.708	INTRON X11Lbeta
3R	25912708	3R_25912708_SNP [dm3] 3R_30086986_SNP [dm6]	C	A	3.463e^-4	0.708	INTRON sima
X	20425889	X_20425889_SNP [dm3] X_20554862_SNP [dm6]	A	T	3.467e^-4	0.708	INTRON RunxB
3R	5452909	3R_5452909_SNP [dm3] 3R_9627187_SNP [dm6]	T	A	3.468e^-4	0.708	UPSTREAM CG8319 & 1 other INTERGENIC	TF binding site mE1_TFBS_ttk
X	5229448	X_5229448_SNP [dm3] X_5335415_SNP [dm6]	C	T	3.474e^-4	0.708	DOWNSTREAM CanB INTERGENIC
2L	1598629	2L_1598629_SNP [dm3] 2L_1598629_SNP [dm6]	C	T	3.481e^-4	0.708	INTRON haf & 1 other
3L	11525805	3L_11525805_SNP [dm3] 3L_11532705_SNP [dm6]	G	A	3.497e^-4	0.708	INTRON Mob2
2L	5421271	2L_5421271_SNP [dm3] 2L_5421271_SNP [dm6]	G	T	3.500e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	4534473	3L_4534473_SNP [dm3] 3L_4534473_SNP [dm6]	G	C	3.502e^-4	0.708	INTRON CG11353
3L	2683655	3L_2683655_SNP [dm3] 3L_2683655_SNP [dm6]	A	G	3.504e^-4	0.708	INTRON Fife
2R	9128514	2R_9128514_SNP [dm3] 2R_13241009_SNP [dm6]	G	T	3.510e^-4	0.708	UTR_3_PRIME GstE14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19504706	2R_19504706_SNP [dm3] 2R_23617183_SNP [dm6]	T	G	3.514e^-4	0.708	UPSTREAM CG17664 INTERGENIC	TF binding site mE1_TFBS_sens
2L	677293	2L_677293_SNP [dm3] 2L_677293_SNP [dm6]	G	T	3.515e^-4	0.708	INTRON ds
3L	4232784	3L_4232784_SNP [dm3] 3L_4232784_SNP [dm6]	G	C	3.515e^-4	0.708	INTRON ImpL2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	16864005	2R_16864005_SNP [dm3] 2R_20976500_SNP [dm6]	A	T	3.515e^-4	0.708	UPSTREAM CG9344 INTRON CG34115	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	428271	3L_428271_SNP [dm3] 3L_428271_SNP [dm6]	T	A	3.528e^-4	0.708	INTERGENIC
X	2691441	X_2691441_SNP [dm3] X_2797408_SNP [dm6]	C	T	3.537e^-4	0.708	UPSTREAM w INTRON kirre
3L	2392497	3L_2392497_SNP [dm3] 3L_2392497_SNP [dm6]	C	T	3.547e^-4	0.708	INTRON CG45186
3L	9722198	3L_9722198_SNP [dm3] 3L_9729098_SNP [dm6]	G	A	3.554e^-4	0.708	UTR_3_PRIME Naa60 UPSTREAM ATPsyn-b DOWNSTREAM Naa60	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18259014	X_18259014_SNP [dm3] X_18364981_SNP [dm6]	A	G	3.554e^-4	0.708	INTERGENIC
3L	4557102	3L_4557102_SNP [dm3] 3L_4557102_SNP [dm6]	A	G	3.557e^-4	0.708	UPSTREAM CG42540 INTRON CG42540
3L	18148111	3L_18148111_DEL [dm3] 3L_18155011_DEL [dm6]	AAATTG	A	3.560e^-4	0.708	UTR_3_PRIME CG13699
2L	19841437	2L_19841437_SNP [dm3] 2L_19841437_SNP [dm6]	G	A	3.561e^-4	0.708	INTRON sick
2L	11870971	2L_11870971_SNP [dm3] 2L_11870971_SNP [dm6]	G	T	3.563e^-4	0.708	INTRON Pde1c
3R	14771246	3R_14771246_SNP [dm3] 3R_18945524_SNP [dm6]	G	A	3.564e^-4	0.708	INTRON CG42613
3L	17678721	3L_17678721_SNP [dm3] 3L_17685621_SNP [dm6]	C	A	3.573e^-4	0.708	INTERGENIC
3R	27124410	3R_27124410_SNP [dm3] 3R_31298688_SNP [dm6]	G	T	3.576e^-4	0.708	INTERGENIC
2R	19297711	2R_19297711_SNP [dm3] 2R_23410188_SNP [dm6]	C	T	3.582e^-4	0.708	INTERGENIC
3R	3962779	3R_3962779_SNP [dm3] 3R_8137057_SNP [dm6]	G	T	3.584e^-4	0.708	INTERGENIC
3R	19243568	3R_19243568_SNP [dm3] 3R_23417846_SNP [dm6]	A	T	3.586e^-4	0.708	INTRON CG4374
3L	10279903	3L_10279903_SNP [dm3] 3L_10286803_SNP [dm6]	G	T	3.591e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	15549826	2L_15549826_SNP [dm3] 2L_15549826_SNP [dm6]	C	G	3.600e^-4	0.708	UPSTREAM CR45728 & 1 other INTERGENIC
2L	1239603	2L_1239603_SNP [dm3] 2L_1239603_SNP [dm6]	A	G	3.602e^-4	0.708	UPSTREAM CG5397 INTERGENIC
3R	4596938	3R_4596938_SNP [dm3] 3R_8771216_SNP [dm6]	A	T	3.603e^-4	0.708	DOWNSTREAM CG13318 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	26700759	3R_26700759_SNP [dm3] 3R_30875037_SNP [dm6]	G	C	3.608e^-4	0.708	SYNONYMOUS_CODING CG15546	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12223151	3L_12223151_SNP [dm3] 3L_12230051_SNP [dm6]	T	A	3.610e^-4	0.708	INTRON app
2R	20139803	2R_20139803_SNP [dm3] 2R_24252280_SNP [dm6]	A	T	3.612e^-4	0.708	UPSTREAM Ir60a DOWNSTREAM snoRNA:Me18S-A1597 INTRON nord
2L	5867610	2L_5867610_SNP [dm3] 2L_5867610_SNP [dm6]	T	C	3.618e^-4	0.708	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4784590	2L_4784590_SNP [dm3] 2L_4784590_SNP [dm6]	G	A	3.624e^-4	0.708	INTRON CG15630
X	18459942	X_18459942_SNP [dm3] X_18565909_SNP [dm6]	T	G	3.631e^-4	0.708	UPSTREAM Bx DOWNSTREAM tRNA:CR32546 INTRON Bx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	8391974	3L_8391974_SNP [dm3] 3L_8398874_SNP [dm6]	G	A	3.631e^-4	0.708	INTRON CG7120
2L	17870711	2L_17870711_SNP [dm3] 2L_17870711_SNP [dm6]	G	C	3.643e^-4	0.708	INTRON CadN2
2L	9467640	2L_9467640_SNP [dm3] 2L_9467640_SNP [dm6]	C	T	3.644e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7962127	2L_7962127_SNP [dm3] 2L_7962127_SNP [dm6]	A	C	3.644e^-4	0.708	INTRON Snoo
3R	12800193	3R_12800193_SNP [dm3] 3R_16974471_SNP [dm6]	A	T	3.647e^-4	0.708	UPSTREAM VhaM9.7-d INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	1375879	3L_1375879_SNP [dm3] 3L_1375879_SNP [dm6]	G	A	3.651e^-4	0.708	INTRON Ptp61F & 1 other
2R	7130558	2R_7130558_SNP [dm3] 2R_11243053_SNP [dm6]	C	A	3.654e^-4	0.708	UPSTREAM Listericin INTERGENIC
3R	22946973	3R_22946973_SNP [dm3] 3R_27121251_SNP [dm6]	C	G	3.655e^-4	0.708	SYNONYMOUS_CODING CG5882 DOWNSTREAM CG6059	TF binding site mE1_TFBS_cad
X	13504220	X_13504220_SNP [dm3] X_13610187_SNP [dm6]	T	C	3.660e^-4	0.708	SYNONYMOUS_CODING Ndc80 DOWNSTREAM CG11178	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17563062	2R_17563062_SNP [dm3] 2R_21675557_SNP [dm6]	G	C	3.664e^-4	0.708	INTRON CG30263
X	11984414	X_11984414_SNP [dm3] X_12090381_SNP [dm6]	A	G	3.675e^-4	0.708	UPSTREAM CR32658 INTRON CR43960 & 1 other
X	10569600	X_10569600_SNP [dm3] X_10675567_SNP [dm6]	T	A	3.676e^-4	0.708	INTRON X11Lbeta
3L	4737951	3L_4737951_SNP [dm3] 3L_4737951_SNP [dm6]	C	A	3.684e^-4	0.708	INTRON RhoGEF64C
X	20227673	X_20227673_SNP [dm3] X_20356646_SNP [dm6]	G	C	3.691e^-4	0.708	INTERGENIC
3R	11905552	3R_11905552_SNP [dm3] 3R_16079830_SNP [dm6]	G	A	3.695e^-4	0.708	NON_SYNONYMOUS_CODING CG32855 INTRON Mhcl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18202714	3L_18202714_SNP [dm3] 3L_18209614_SNP [dm6]	T	G	3.695e^-4	0.708	INTERGENIC
3R	21406757	3R_21406757_SNP [dm3] 3R_25581035_SNP [dm6]	A	G	3.701e^-4	0.708	DOWNSTREAM CG4582 INTRON msi
3R	21406758	3R_21406758_SNP [dm3] 3R_25581036_SNP [dm6]	C	A	3.701e^-4	0.708	DOWNSTREAM CG4582 INTRON msi
2R	19071888	2R_19071888_SNP [dm3] 2R_23184365_SNP [dm6]	A	G	3.704e^-4	0.708	UPSTREAM CG13539 INTRON CG34371 & 1 other
2L	5557581	2L_5557581_SNP [dm3] 2L_5557581_SNP [dm6]	A	G	3.710e^-4	0.708	SPLICE_SITE_REGION GluRIIA SYNONYMOUS_CODING GluRIIA
2R	14671861	2R_14671861_SNP [dm3] 2R_18784356_SNP [dm6]	T	A	3.712e^-4	0.708	INTRON CG15080	enhancer mE1_CBP_Enhancers
3L	1733100	3L_1733100_SNP [dm3] 3L_1733100_SNP [dm6]	G	A	3.717e^-4	0.708	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2234410	3L_2234410_SNP [dm3] 3L_2234410_SNP [dm6]	G	A	3.717e^-4	0.708	SYNONYMOUS_CODING Oseg2 DOWNSTREAM CG9018	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4596928	3R_4596928_SNP [dm3] 3R_8771206_SNP [dm6]	A	T	3.723e^-4	0.708	DOWNSTREAM CG13318 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	4320731	2L_4320731_SNP [dm3] 2L_4320731_SNP [dm6]	T	A	3.724e^-4	0.708	SYNONYMOUS_CODING tutl UTR_3_PRIME tutl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14489459	3L_14489459_SNP [dm3] 3L_14496359_SNP [dm6]	G	C	3.725e^-4	0.708	INTRON bbg	TF binding site mE1_TFBS_cad
2R	12282763	2R_12282763_SNP [dm3] 2R_16395258_SNP [dm6]	A	T	3.730e^-4	0.708	INTRON Sema-2b
3R	25241412	3R_25241412_SNP [dm3] 3R_29415690_SNP [dm6]	G	T	3.730e^-4	0.708	INTRON Ptp99A
3L	10756244	3L_10756244_SNP [dm3] 3L_10763144_SNP [dm6]	A	G	3.734e^-4	0.708	INTERGENIC
2R	12280825	2R_12280825_SNP [dm3] 2R_16393320_SNP [dm6]	G	T	3.738e^-4	0.708	INTRON Sema-2b
2R	11320149	2R_11320149_SNP [dm3] 2R_15432644_SNP [dm6]	T	A	3.748e^-4	0.708	INTRON CG43729
X	4461691	X_4461691_SNP [dm3] X_4567658_SNP [dm6]	G	A	3.750e^-4	0.708	INTRON CR32773
3R	21388057	3R_21388057_SNP [dm3] 3R_25562335_SNP [dm6]	A	T	3.750e^-4	0.708	INTRON msi
3L	10638504	3L_10638504_SNP [dm3] 3L_10645404_SNP [dm6]	G	A	3.751e^-4	0.708	DOWNSTREAM CG14153 INTRON CG32066
3L	2171809	3L_2171809_SNP [dm3] 3L_2171809_SNP [dm6]	T	A	3.752e^-4	0.708	UPSTREAM CG5704 EXON CR15821
2R	7961237	2R_7961237_SNP [dm3] 2R_12073732_SNP [dm6]	G	A	3.752e^-4	0.708	INTRON CG8888
X	14154449	X_14154449_SNP [dm3] X_14260416_SNP [dm6]	G	T	3.756e^-4	0.708	UPSTREAM CG1461 INTERGENIC
2R	5951498	2R_5951498_SNP [dm3] 2R_10063993_SNP [dm6]	G	A	3.762e^-4	0.708	SYNONYMOUS_CODING CG2292 DOWNSTREAM magu
X	2310890	X_2310890_SNP [dm3] X_2416857_SNP [dm6]	C	G	3.762e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	14805573	X_14805573_SNP [dm3] X_14911540_SNP [dm6]	G	A	3.762e^-4	0.708	UPSTREAM CG14406 DOWNSTREAM CG12398 INTRON Flo2
X	10088151	X_10088151_SNP [dm3] X_10194118_SNP [dm6]	C	T	3.765e^-4	0.708	UTR_3_PRIME CG43902 INTRON CR44894
2R	9247087	2R_9247087_SNP [dm3] 2R_13359582_SNP [dm6]	A	G	3.769e^-4	0.708	INTERGENIC
3R	24829753	3R_24829753_SNP [dm3] 3R_29004031_SNP [dm6]	A	T	3.770e^-4	0.708	INTRON wat
2L	9104684	2L_9104684_SNP [dm3] 2L_9104684_SNP [dm6]	A	T	3.775e^-4	0.708	INTERGENIC
2L	16619019	2L_16619019_SNP [dm3] 2L_16619019_SNP [dm6]	T	A	3.775e^-4	0.708	INTRON CG42389	TF binding site BDTNP1_TFBS_dl
3L	12435444	3L_12435444_SNP [dm3] 3L_12442344_SNP [dm6]	C	A	3.778e^-4	0.708	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18893931	3R_18893931_SNP [dm3] 3R_23068209_SNP [dm6]	C	T	3.780e^-4	0.708	UPSTREAM CG17111 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18712002	3L_18712002_SNP [dm3] 3L_18718902_SNP [dm6]	A	T	3.781e^-4	0.708	INTERGENIC
3R	13251638	3R_13251638_DEL [dm3] 3R_17425916_DEL [dm6]	AAA	A	3.782e^-4	0.708	UTR_5_PRIME CG5873	TF binding site BDTNP1_TFBS_z
X	8222268	X_8222268_SNP [dm3] X_8328235_SNP [dm6]	A	T	3.783e^-4	0.708	INTRON nAChRalpha3
3R	14825235	3R_14825235_SNP [dm3] 3R_18999513_SNP [dm6]	A	G	3.784e^-4	0.708	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10297857	X_10297857_SNP [dm3] X_10403824_SNP [dm6]	A	G	3.784e^-4	0.708	INTRON flw	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17880386	2L_17880386_SNP [dm3] 2L_17880386_SNP [dm6]	G	T	3.785e^-4	0.708	INTERGENIC
X	11087208	X_11087208_SNP [dm3] X_11193175_SNP [dm6]	G	A	3.788e^-4	0.708	EXON CR44765

By genomic position
Variant impact
Gene name

Wing_Intervein_Area2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results