DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.302e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.09178
In_3R_Mo	0.03468

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	5.1555	0.0759
In_3R_Mo	6.7317	0.0345

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2706 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	712385	3L_712385_DEL [dm3] 3L_712385_DEL [dm6]	TA	T	5.347e^-7	0.262	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712384	3L_712384_SNP [dm3] 3L_712384_SNP [dm6]	T	C	6.332e^-7	0.262	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712376	3L_712376_SNP [dm3] 3L_712376_SNP [dm6]	G	A	6.354e^-7	0.262	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712235	3L_712235_SNP [dm3] 3L_712235_SNP [dm6]	C	T	6.947e^-7	0.262	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	4340520	3R_4340520_SNP [dm3] 3R_8514798_SNP [dm6]	T	A	1.086e^-6	0.262	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	712399	3L_712399_SNP [dm3] 3L_712399_SNP [dm6]	A	T	1.110e^-6	0.262	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712348	3L_712348_SNP [dm3] 3L_712348_SNP [dm6]	G	T	1.139e^-6	0.262	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712388	3L_712388_DEL [dm3] 3L_712388_DEL [dm6]	AAT	A	1.469e^-6	0.262	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712423	3L_712423_SNP [dm3] 3L_712423_SNP [dm6]	G	C	1.616e^-6	0.262	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712337	3L_712337_SNP [dm3] 3L_712337_SNP [dm6]	G	T	2.049e^-6	0.262	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	3437649	2L_3437649_SNP [dm3] 2L_3437649_SNP [dm6]	A	T	2.076e^-6	0.262	INTERGENIC
X	4093939	X_4093939_SNP [dm3] X_4199906_SNP [dm6]	A	C	2.237e^-6	0.262	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	14919578	3L_14919578_SNP [dm3] 3L_14926478_SNP [dm6]	A	G	2.288e^-6	0.262	UTR_5_PRIME DCX-EMAP INTRON DCX-EMAP
3L	4737896	3L_4737896_SNP [dm3] 3L_4737896_SNP [dm6]	G	A	2.375e^-6	0.262	INTRON RhoGEF64C
3R	4339621	3R_4339621_SNP [dm3] 3R_8513899_SNP [dm6]	C	G	2.394e^-6	0.262	UPSTREAM Or85c INTERGENIC
3L	712377	3L_712377_SNP [dm3] 3L_712377_SNP [dm6]	A	C	2.440e^-6	0.262	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712226	3L_712226_SNP [dm3] 3L_712226_SNP [dm6]	C	A	2.441e^-6	0.262	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	712374	3L_712374_SNP [dm3] 3L_712374_SNP [dm6]	G	C	2.511e^-6	0.262	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	4339924	3R_4339924_SNP [dm3] 3R_8514202_SNP [dm6]	A	G	2.763e^-6	0.273	INTERGENIC
X	9287766	X_9287766_SNP [dm3] X_9393733_SNP [dm6]	T	C	3.191e^-6	0.277	INTRON mgl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	5448817	3R_5448817_SNP [dm3] 3R_9623095_SNP [dm6]	C	A	3.213e^-6	0.277	INTRON CG8312	TF binding site mE1_TFBS_cad
3L	4737895	3L_4737895_SNP [dm3] 3L_4737895_SNP [dm6]	A	G	3.456e^-6	0.277	INTRON RhoGEF64C
3L	2645866	3L_2645866_SNP [dm3] 3L_2645866_SNP [dm6]	A	G	3.458e^-6	0.277	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16725723	3L_16725723_SNP [dm3] 3L_16732623_SNP [dm6]	C	G	4.717e^-6	0.277	UPSTREAM CG9701 INTERGENIC
X	3035763	X_3035763_DEL [dm3] X_3141730_DEL [dm6]	GG	G	4.772e^-6	0.277	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	4416355	2L_4416355_SNP [dm3] 2L_4416355_SNP [dm6]	C	G	4.888e^-6	0.277	INTRON CG15431
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	4.890e^-6	0.277	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14919557	3L_14919557_SNP [dm3] 3L_14926457_SNP [dm6]	T	G	4.941e^-6	0.277	UTR_5_PRIME DCX-EMAP INTRON DCX-EMAP	TF binding site mE1_TFBS_cad
3L	711790	3L_711790_SNP [dm3] 3L_711790_SNP [dm6]	A	T	4.983e^-6	0.277	UTR_5_PRIME CG13896	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	712335	3L_712335_SNP [dm3] 3L_712335_SNP [dm6]	T	A	5.034e^-6	0.277	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	15469662	2L_15469662_SNP [dm3] 2L_15469662_SNP [dm6]	A	T	5.474e^-6	0.277	UPSTREAM CR45353 INTERGENIC
3R	13600672	3R_13600672_SNP [dm3] 3R_17774950_SNP [dm6]	C	T	5.485e^-6	0.277	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	712319	3L_712319_INS [dm3] 3L_712319_INS [dm6]	C	CA	5.495e^-6	0.277	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712342	3L_712342_SNP [dm3] 3L_712342_SNP [dm6]	A	T	5.495e^-6	0.277	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	14489497	3L_14489497_SNP [dm3] 3L_14496397_SNP [dm6]	T	A	5.560e^-6	0.277	INTRON bbg	TF binding site mE1_TFBS_cad
X	3035757	X_3035757_SNP [dm3] X_3141724_SNP [dm6]	A	T	5.660e^-6	0.277	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	6788786	X_6788786_SNP [dm3] X_6894753_SNP [dm6]	A	C	5.815e^-6	0.277	INTERGENIC
3L	711857	3L_711857_SNP [dm3] 3L_711857_SNP [dm6]	A	C	5.917e^-6	0.277	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	17324045	2L_17324045_SNP [dm3] 2L_17324045_SNP [dm6]	T	C	6.097e^-6	0.277	INTERGENIC
3R	4342921	3R_4342921_SNP [dm3] 3R_8517199_SNP [dm6]	C	T	6.154e^-6	0.277	UPSTREAM CG11737 INTERGENIC
3L	14489486	3L_14489486_SNP [dm3] 3L_14496386_SNP [dm6]	A	C	6.209e^-6	0.277	INTRON bbg	TF binding site mE1_TFBS_cad
3L	14489495	3L_14489495_SNP [dm3] 3L_14496395_SNP [dm6]	G	A	6.209e^-6	0.277	INTRON bbg	TF binding site mE1_TFBS_cad
X	12754429	X_12754429_SNP [dm3] X_12860396_SNP [dm6]	C	A	6.855e^-6	0.297	INTRON Pde9
3R	27127740	3R_27127740_SNP [dm3] 3R_31302018_SNP [dm6]	G	C	7.064e^-6	0.297	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15469667	2L_15469667_SNP [dm3] 2L_15469667_SNP [dm6]	T	G	7.411e^-6	0.297	UPSTREAM CR45353 INTERGENIC
3L	712455	3L_712455_SNP [dm3] 3L_712455_SNP [dm6]	C	T	7.422e^-6	0.297	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	8156894	X_8156894_INS [dm3] X_8262861_INS [dm6]	T	TTCCACGCTCCGAACCAAAT...	7.448e^-6	0.297	INTRON CG1632	TF binding site BDTNP1_TFBS_da
3R	25912708	3R_25912708_SNP [dm3] 3R_30086986_SNP [dm6]	C	A	7.711e^-6	0.299	INTRON sima
X	19421607	X_19421607_DEL [dm3] X_19527574_DEL [dm6]	CAC	C	7.850e^-6	0.299	UPSTREAM CoRest INTRON CoRest	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	5448700	3R_5448700_SNP [dm3] 3R_9622978_SNP [dm6]	G	T	8.090e^-6	0.299	UTR_5_PRIME CG8312 INTRON CG8312
3L	712343	3L_712343_SNP [dm3] 3L_712343_SNP [dm6]	A	C	8.137e^-6	0.299	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	8156849	X_8156849_SNP [dm3] X_8262816_SNP [dm6]	T	C	8.501e^-6	0.305	INTRON CG1632	TF binding site BDTNP1_TFBS_da
3L	9783263	3L_9783263_SNP [dm3] 3L_9790163_SNP [dm6]	T	G	8.858e^-6	0.305	DOWNSTREAM Zasp67 INTRON Zasp67	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	9111772	2L_9111772_SNP [dm3] 2L_9111772_SNP [dm6]	G	C	8.895e^-6	0.305	UPSTREAM Or30a INTERGENIC
2L	1239660	2L_1239660_SNP [dm3] 2L_1239660_SNP [dm6]	G	A	8.934e^-6	0.305	UPSTREAM CG5397 INTERGENIC
X	13998264	X_13998264_SNP [dm3] X_14104231_SNP [dm6]	C	G	9.159e^-6	0.307	UPSTREAM tRNA:S4:12Ee & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	712323	3L_712323_SNP [dm3] 3L_712323_SNP [dm6]	T	A	9.561e^-6	0.314	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	5447308	3R_5447308_SNP [dm3] 3R_9621586_SNP [dm6]	G	T	9.753e^-6	0.315	NON_SYNONYMOUS_CODING CG8312	TF binding site mE1_TFBS_cad
3R	23141757	3R_23141757_SNP [dm3] 3R_27316035_SNP [dm6]	T	A	1.004e^-5	0.319	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	11525805	3L_11525805_SNP [dm3] 3L_11532705_SNP [dm6]	G	A	1.058e^-5	0.32	INTRON Mob2
3L	712322	3L_712322_SNP [dm3] 3L_712322_SNP [dm6]	A	G	1.068e^-5	0.32	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	1.073e^-5	0.32	INTRON dnc
3L	4737859	3L_4737859_SNP [dm3] 3L_4737859_SNP [dm6]	A	G	1.107e^-5	0.32	INTRON RhoGEF64C
X	14678933	X_14678933_SNP [dm3] X_14784900_SNP [dm6]	A	C	1.107e^-5	0.32	UTR_3_PRIME Ag5r UPSTREAM Ag5r2 DOWNSTREAM Ag5r
3R	24829701	3R_24829701_SNP [dm3] 3R_29003979_SNP [dm6]	C	G	1.110e^-5	0.32	INTRON wat
3R	27128046	3R_27128046_SNP [dm3] 3R_31302324_SNP [dm6]	C	T	1.125e^-5	0.32	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_inv
3R	24353994	3R_24353994_SNP [dm3] 3R_28528272_SNP [dm6]	G	A	1.169e^-5	0.323	NON_SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4349280	3R_4349280_SNP [dm3] 3R_8523558_SNP [dm6]	T	C	1.171e^-5	0.323	UPSTREAM CG31259 DOWNSTREAM CG31454 INTERGENIC
3R	5448651	3R_5448651_SNP [dm3] 3R_9622929_SNP [dm6]	A	T	1.222e^-5	0.327	UPSTREAM CG8312 INTRON CG8312
3L	1727047	3L_1727047_SNP [dm3] 3L_1727047_SNP [dm6]	G	A	1.229e^-5	0.327	INTRON drpr
X	11121667	X_11121667_SNP [dm3] X_11227634_SNP [dm6]	T	C	1.240e^-5	0.327	INTRON CG44422
2L	9103236	2L_9103236_SNP [dm3] 2L_9103236_SNP [dm6]	C	T	1.368e^-5	0.348	INTERGENIC
3R	23141761	3R_23141761_INS [dm3] 3R_27316039_INS [dm6]	G	GG	1.374e^-5	0.348	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	712501	3L_712501_SNP [dm3] 3L_712501_SNP [dm6]	C	G	1.392e^-5	0.348	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	21160839	X_21160839_SNP [dm3] X_21289812_SNP [dm6]	T	C	1.394e^-5	0.348	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27146681	3R_27146681_SNP [dm3] 3R_31320959_SNP [dm6]	C	A	1.471e^-5	0.362	INTRON CG34347
3R	27136665	3R_27136665_SNP [dm3] 3R_31310943_SNP [dm6]	G	A	1.486e^-5	0.362	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	4841343	3L_4841343_SNP [dm3] 3L_4841343_SNP [dm6]	A	C	1.609e^-5	0.384	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	19553902	2R_19553902_SNP [dm3] 2R_23666379_SNP [dm6]	G	C	1.675e^-5	0.384	UPSTREAM Pde8 INTRON Pde8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13487564	3L_13487564_SNP [dm3] 3L_13494464_SNP [dm6]	G	T	1.718e^-5	0.384	INTRON Tgi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	1675714	2L_1675714_SNP [dm3] 2L_1675714_SNP [dm6]	T	A	1.722e^-5	0.384	INTRON chinmo
2L	1675720	2L_1675720_SNP [dm3] 2L_1675720_SNP [dm6]	C	G	1.722e^-5	0.384	INTRON chinmo
3L	14489539	3L_14489539_INS [dm3] 3L_14496439_INS [dm6]	A	ATTTTCTA	1.726e^-5	0.384	INTRON bbg
2R	15874958	2R_15874958_SNP [dm3] 2R_19987453_SNP [dm6]	G	A	1.755e^-5	0.384	INTERGENIC
2L	7297033	2L_7297033_SNP [dm3] 2L_7297033_SNP [dm6]	A	T	1.756e^-5	0.384	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	7993136	X_7993136_SNP [dm3] X_8099103_SNP [dm6]	C	A	1.773e^-5	0.384	INTRON CG2258	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1734436	3L_1734436_SNP [dm3] 3L_1734436_SNP [dm6]	A	G	1.785e^-5	0.384	SPLICE_SITE_REGION Oseg4 INTRON Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1733503	3L_1733503_SNP [dm3] 3L_1733503_SNP [dm6]	G	A	1.900e^-5	0.384	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1734655	3L_1734655_SNP [dm3] 3L_1734655_SNP [dm6]	G	A	1.936e^-5	0.384	SYNONYMOUS_CODING Oseg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10565818	2L_10565818_SNP [dm3] 2L_10565818_SNP [dm6]	A	T	1.972e^-5	0.384	INTRON Trim9
2R	11736214	2R_11736214_SNP [dm3] 2R_15848709_SNP [dm6]	A	T	1.973e^-5	0.384	UTR_5_PRIME tun
3R	27136626	3R_27136626_SNP [dm3] 3R_31310904_SNP [dm6]	G	T	1.977e^-5	0.384	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	7479975	3L_7479975_SNP [dm3] 3L_7486875_SNP [dm6]	T	C	2.005e^-5	0.384	SYNONYMOUS_CODING mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4737892	3L_4737892_SNP [dm3] 3L_4737892_SNP [dm6]	T	C	2.059e^-5	0.384	INTRON RhoGEF64C
2L	17333598	2L_17333598_SNP [dm3] 2L_17333598_SNP [dm6]	G	A	2.091e^-5	0.384	INTERGENIC
3L	837693	3L_837693_SNP [dm3] 3L_837693_SNP [dm6]	A	C	2.094e^-5	0.384	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3R	27136505	3R_27136505_SNP [dm3] 3R_31310783_SNP [dm6]	T	A	2.112e^-5	0.384	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	24485802	3R_24485802_SNP [dm3] 3R_28660080_SNP [dm6]	A	G	2.118e^-5	0.384	INTERGENIC
X	21160844	X_21160844_SNP [dm3] X_21289817_SNP [dm6]	G	C	2.121e^-5	0.384	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	2.126e^-5	0.384	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad

Showing 1 to 100 of 1,000 entries

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GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.059e^-2)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.06554

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	5.3486	0.069
In_3R_Mo	5.6662	0.0588

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2478 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

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Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	1.984e^-7	0.372	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3437649	2L_3437649_SNP [dm3] 2L_3437649_SNP [dm6]	A	T	1.013e^-6	0.564	INTERGENIC
3R	27128046	3R_27128046_SNP [dm3] 3R_31302324_SNP [dm6]	C	T	1.638e^-6	0.564	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_inv
2L	1239660	2L_1239660_SNP [dm3] 2L_1239660_SNP [dm6]	G	A	1.862e^-6	0.564	UPSTREAM CG5397 INTERGENIC
3R	24829701	3R_24829701_SNP [dm3] 3R_29003979_SNP [dm6]	C	G	2.654e^-6	0.564	INTRON wat
3R	26618541	3R_26618541_SNP [dm3] 3R_30792819_SNP [dm6]	A	G	2.678e^-6	0.564	SYNONYMOUS_CODING wts	TF binding site mE1_TFBS_chinmo
X	21063578	X_21063578_SNP [dm3] X_21192551_SNP [dm6]	G	A	3.276e^-6	0.564	UPSTREAM CG14579 INTERGENIC
3L	3910709	3L_3910709_SNP [dm3] 3L_3910709_SNP [dm6]	G	T	3.340e^-6	0.564	UTR_3_PRIME Eip63F-1 UPSTREAM mge DOWNSTREAM Eip63F-1
X	21160839	X_21160839_SNP [dm3] X_21289812_SNP [dm6]	T	C	3.431e^-6	0.564	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13600672	3R_13600672_SNP [dm3] 3R_17774950_SNP [dm6]	C	T	3.501e^-6	0.564	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10785598	2L_10785598_SNP [dm3] 2L_10785598_SNP [dm6]	A	T	3.785e^-6	0.564	INTRON CG31869 EXON CR44582
3L	712348	3L_712348_SNP [dm3] 3L_712348_SNP [dm6]	G	T	3.883e^-6	0.564	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	15293702	3R_15293702_SNP [dm3] 3R_19467980_SNP [dm6]	T	A	3.917e^-6	0.564	INTRON Dys
3L	712384	3L_712384_SNP [dm3] 3L_712384_SNP [dm6]	T	C	4.527e^-6	0.564	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	27127740	3R_27127740_SNP [dm3] 3R_31302018_SNP [dm6]	G	C	4.889e^-6	0.564	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	712385	3L_712385_DEL [dm3] 3L_712385_DEL [dm6]	TA	T	5.846e^-6	0.564	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	5.876e^-6	0.564	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	12772793	X_12772793_SNP [dm3] X_12878760_SNP [dm6]	T	A	5.929e^-6	0.564	INTRON Pde9
3R	24829734	3R_24829734_SNP [dm3] 3R_29004012_SNP [dm6]	A	G	6.263e^-6	0.564	INTRON wat
3L	712376	3L_712376_SNP [dm3] 3L_712376_SNP [dm6]	G	A	7.114e^-6	0.564	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	21160844	X_21160844_SNP [dm3] X_21289817_SNP [dm6]	G	C	7.158e^-6	0.564	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27100391	3R_27100391_DEL [dm3] 3R_31274669_DEL [dm6]	AA	A	7.175e^-6	0.564	INTERGENIC
3L	18663595	3L_18663595_SNP [dm3] 3L_18670495_SNP [dm6]	T	C	7.440e^-6	0.564	SYNONYMOUS_CODING Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	4737896	3L_4737896_SNP [dm3] 3L_4737896_SNP [dm6]	G	A	7.797e^-6	0.564	INTRON RhoGEF64C
2L	4416355	2L_4416355_SNP [dm3] 2L_4416355_SNP [dm6]	C	G	8.917e^-6	0.564	INTRON CG15431
2L	15469662	2L_15469662_SNP [dm3] 2L_15469662_SNP [dm6]	A	T	8.941e^-6	0.564	UPSTREAM CR45353 INTERGENIC
2R	15296549	2R_15296549_SNP [dm3] 2R_19409044_SNP [dm6]	T	G	9.041e^-6	0.564	UTR_3_PRIME hts DOWNSTREAM hts INTRON hts
3R	15293710	3R_15293710_SNP [dm3] 3R_19467988_SNP [dm6]	A	G	9.345e^-6	0.564	INTRON Dys
X	8785031	X_8785031_SNP [dm3] X_8890998_SNP [dm6]	G	T	9.893e^-6	0.564	INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	15296567	2R_15296567_SNP [dm3] 2R_19409062_SNP [dm6]	C	T	9.930e^-6	0.564	UTR_3_PRIME hts DOWNSTREAM hts INTRON hts
3L	7479975	3L_7479975_SNP [dm3] 3L_7486875_SNP [dm6]	T	C	1.010e^-5	0.564	SYNONYMOUS_CODING mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	712235	3L_712235_SNP [dm3] 3L_712235_SNP [dm6]	C	T	1.041e^-5	0.564	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	602846	3L_602846_SNP [dm3] 3L_602846_SNP [dm6]	G	C	1.135e^-5	0.564	INTRON CG13893
3R	27125014	3R_27125014_SNP [dm3] 3R_31299292_SNP [dm6]	G	T	1.171e^-5	0.564	INTERGENIC
3L	712388	3L_712388_DEL [dm3] 3L_712388_DEL [dm6]	AAT	A	1.184e^-5	0.564	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	4737895	3L_4737895_SNP [dm3] 3L_4737895_SNP [dm6]	A	G	1.190e^-5	0.564	INTRON RhoGEF64C
2R	14678270	2R_14678270_SNP [dm3] 2R_18790765_SNP [dm6]	T	C	1.204e^-5	0.564	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27125093	3R_27125093_SNP [dm3] 3R_31299371_SNP [dm6]	G	T	1.213e^-5	0.564	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	15293787	3R_15293787_SNP [dm3] 3R_19468065_SNP [dm6]	T	A	1.247e^-5	0.564	INTRON Dys
2R	3178769	2R_3178769_SNP [dm3] 2R_7291264_SNP [dm6]	G	A	1.253e^-5	0.564	INTRON pwn	TF binding site mE1_TFBS_cad
3R	27136665	3R_27136665_SNP [dm3] 3R_31310943_SNP [dm6]	G	A	1.254e^-5	0.564	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	27125777	3R_27125777_SNP [dm3] 3R_31300055_SNP [dm6]	G	A	1.264e^-5	0.564	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	24829722	3R_24829722_SNP [dm3] 3R_29004000_SNP [dm6]	T	C	1.316e^-5	0.567	INTRON wat
3L	712377	3L_712377_SNP [dm3] 3L_712377_SNP [dm6]	A	C	1.354e^-5	0.567	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	4382182	3R_4382182_SNP [dm3] 3R_8556460_SNP [dm6]	G	A	1.362e^-5	0.567	INTERGENIC
2L	17324045	2L_17324045_SNP [dm3] 2L_17324045_SNP [dm6]	T	C	1.442e^-5	0.573	INTERGENIC
3R	26361338	3R_26361338_SNP [dm3] 3R_30535616_SNP [dm6]	C	A	1.509e^-5	0.573	INTRON tmod
3R	27136626	3R_27136626_SNP [dm3] 3R_31310904_SNP [dm6]	G	T	1.544e^-5	0.573	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	712399	3L_712399_SNP [dm3] 3L_712399_SNP [dm6]	A	T	1.565e^-5	0.573	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	14192475	2R_14192475_SNP [dm3] 2R_18304970_SNP [dm6]	T	G	1.566e^-5	0.573	UPSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	17891617	2L_17891617_SNP [dm3] 2L_17891617_SNP [dm6]	C	T	1.605e^-5	0.573	INTERGENIC
3R	13600157	3R_13600157_SNP [dm3] 3R_17774435_SNP [dm6]	T	G	1.670e^-5	0.573	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3L	4841343	3L_4841343_SNP [dm3] 3L_4841343_SNP [dm6]	A	C	1.683e^-5	0.573	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	12392713	2R_12392713_SNP [dm3] 2R_16505208_SNP [dm6]	G	A	1.729e^-5	0.573	INTRON Sema-2a
3L	4737859	3L_4737859_SNP [dm3] 3L_4737859_SNP [dm6]	A	G	1.763e^-5	0.573	INTRON RhoGEF64C
2R	19553891	2R_19553891_SNP [dm3] 2R_23666368_SNP [dm6]	C	T	1.825e^-5	0.573	UPSTREAM Pde8 INTRON Pde8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	19995744	X_19995744_SNP [dm3] X_20101711_SNP [dm6]	A	T	1.845e^-5	0.573	INTERGENIC	transposable element FlyBase
3L	4534444	3L_4534444_SNP [dm3] 3L_4534444_SNP [dm6]	C	A	1.858e^-5	0.573	INTRON CG11353
3R	15293746	3R_15293746_SNP [dm3] 3R_19468024_SNP [dm6]	A	G	1.860e^-5	0.573	INTRON Dys
3L	712501	3L_712501_SNP [dm3] 3L_712501_SNP [dm6]	C	G	1.909e^-5	0.573	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	14919578	3L_14919578_SNP [dm3] 3L_14926478_SNP [dm6]	A	G	1.955e^-5	0.573	UTR_5_PRIME DCX-EMAP INTRON DCX-EMAP
X	19995797	X_19995797_SNP [dm3] X_20101764_SNP [dm6]	C	A	1.973e^-5	0.573	INTERGENIC	transposable element FlyBase
3L	712374	3L_712374_SNP [dm3] 3L_712374_SNP [dm6]	G	C	1.982e^-5	0.573	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	12176805	3L_12176805_SNP [dm3] 3L_12183705_SNP [dm6]	T	C	2.038e^-5	0.573	DOWNSTREAM CAH2 INTERGENIC
3R	19217624	3R_19217624_SNP [dm3] 3R_23391902_SNP [dm6]	G	A	2.085e^-5	0.573	INTERGENIC
3L	22883797	3L_22883797_SNP [dm3] 3L_22890697_SNP [dm6]	A	G	2.130e^-5	0.573	INTRON slif	transposable element FlyBase
X	3599377	X_3599377_SNP [dm3] X_3705344_SNP [dm6]	G	T	2.265e^-5	0.573	UTR_3_PRIME Rala
2L	17333598	2L_17333598_SNP [dm3] 2L_17333598_SNP [dm6]	G	A	2.289e^-5	0.573	INTERGENIC
3R	25593365	3R_25593365_SNP [dm3] 3R_29767643_SNP [dm6]	C	A	2.309e^-5	0.573	INTRON kay	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	13950559	2R_13950559_SNP [dm3] 2R_18063054_SNP [dm6]	A	T	2.327e^-5	0.573	INTRON CG34386
2R	19553962	2R_19553962_SNP [dm3] 2R_23666439_SNP [dm6]	G	A	2.378e^-5	0.573	UPSTREAM Pde8 INTRON Pde8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	2926031	X_2926031_SNP [dm3] X_3031998_SNP [dm6]	C	A	2.404e^-5	0.573	INTRON kirre
2L	15469667	2L_15469667_SNP [dm3] 2L_15469667_SNP [dm6]	T	G	2.430e^-5	0.573	UPSTREAM CR45353 INTERGENIC
3R	27136505	3R_27136505_SNP [dm3] 3R_31310783_SNP [dm6]	T	A	2.432e^-5	0.573	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	12971257	3R_12971257_SNP [dm3] 3R_17145535_SNP [dm6]	A	C	2.465e^-5	0.573	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3R	12971260	3R_12971260_DEL [dm3] 3R_17145538_DEL [dm6]	AGGTAAGCATCCTA...	G	2.465e^-5	0.573	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
X	3035763	X_3035763_DEL [dm3] X_3141730_DEL [dm6]	GG	G	2.476e^-5	0.573	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	588349	2L_588349_SNP [dm3] 2L_588349_SNP [dm6]	T	C	2.483e^-5	0.573	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	589172	2L_589172_SNP [dm3] 2L_589172_SNP [dm6]	C	T	2.515e^-5	0.573	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
3R	4487071	3R_4487071_SNP [dm3] 3R_8661349_SNP [dm6]	T	C	2.517e^-5	0.573	NON_SYNONYMOUS_CODING p UPSTREAM bel
3L	15757470	3L_15757470_SNP [dm3] 3L_15764370_SNP [dm6]	G	A	2.524e^-5	0.573	INTERGENIC
3L	712226	3L_712226_SNP [dm3] 3L_712226_SNP [dm6]	C	A	2.533e^-5	0.573	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
X	14154319	X_14154319_SNP [dm3] X_14260286_SNP [dm6]	G	C	2.542e^-5	0.573	UPSTREAM CG1461 INTERGENIC
X	3035757	X_3035757_SNP [dm3] X_3141724_SNP [dm6]	A	T	2.584e^-5	0.573	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	4238728	3L_4238728_SNP [dm3] 3L_4238728_SNP [dm6]	A	T	2.600e^-5	0.573	INTERGENIC
3L	9485810	3L_9485810_SNP [dm3] 3L_9492710_SNP [dm6]	G	A	2.693e^-5	0.583	UPSTREAM CG32037 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7369219	3L_7369219_SNP [dm3] 3L_7376119_SNP [dm6]	G	C	2.767e^-5	0.583	INTRON SMSr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	14919557	3L_14919557_SNP [dm3] 3L_14926457_SNP [dm6]	T	G	2.815e^-5	0.583	UTR_5_PRIME DCX-EMAP INTRON DCX-EMAP	TF binding site mE1_TFBS_cad
3L	712423	3L_712423_SNP [dm3] 3L_712423_SNP [dm6]	G	C	2.820e^-5	0.583	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	4238717	3L_4238717_SNP [dm3] 3L_4238717_SNP [dm6]	G	T	2.851e^-5	0.583	INTERGENIC
3L	4242100	3L_4242100_SNP [dm3] 3L_4242100_SNP [dm6]	T	C	2.881e^-5	0.583	UPSTREAM pav INTRON CG14997	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	711857	3L_711857_SNP [dm3] 3L_711857_SNP [dm6]	A	C	2.887e^-5	0.583	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	6735678	2L_6735678_SNP [dm3] 2L_6735678_SNP [dm6]	T	G	2.890e^-5	0.583	UTR_3_PRIME TTLL3B DOWNSTREAM TTLL3A	TF binding site BDTNP1_TFBS_twi
3L	712337	3L_712337_SNP [dm3] 3L_712337_SNP [dm6]	G	T	2.974e^-5	0.589	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	14452456	2R_14452456_SNP [dm3] 2R_18564951_SNP [dm6]	G	A	3.014e^-5	0.589	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4238769	3L_4238769_SNP [dm3] 3L_4238769_SNP [dm6]	T	C	3.050e^-5	0.589	INTERGENIC
2L	7365708	2L_7365708_SNP [dm3] 2L_7365708_SNP [dm6]	C	T	3.077e^-5	0.589	INTRON Wnt10
2R	20658290	2R_20658290_DEL [dm3] 2R_24770767_DEL [dm6]	TG	T	3.110e^-5	0.589	UTR_3_PRIME Eps-15 INTRON Eps-15	TF binding site BDTNP1_TFBS_prd
3L	6100247	3L_6100247_SNP [dm3] 3L_6107147_SNP [dm6]	C	T	3.176e^-5	0.589	INTRON Ets65A	TF binding site mE1_TFBS_cad
2L	16170031	2L_16170031_SNP [dm3] 2L_16170031_SNP [dm6]	C	T	3.196e^-5	0.589	INTRON Ca-alpha1D

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By genomic position
Variant impact
Gene name

Wing_Intervein_Area2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results