DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.409e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.02384

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	6.1206	0.0469

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2213 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	415143	3L_415143_DEL [dm3] 3L_415143_DEL [dm6]	AA	A	4.777e^-7	0.826	INTERGENIC
X	20262267	X_20262267_SNP [dm3] X_20391240_SNP [dm6]	A	G	1.428e^-6	0.826	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20272005	X_20272005_SNP [dm3] X_20400978_SNP [dm6]	A	T	2.639e^-6	0.826	SYNONYMOUS_CODING HERC2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5963561	3R_5963561_SNP [dm3] 3R_10137839_SNP [dm6]	T	C	3.198e^-6	0.826	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	412023	3L_412023_SNP [dm3] 3L_412023_SNP [dm6]	G	T	4.150e^-6	0.826	INTERGENIC
3L	413912	3L_413912_SNP [dm3] 3L_413912_SNP [dm6]	C	T	4.245e^-6	0.826	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	12116819	2R_12116819_SNP [dm3] 2R_16229314_SNP [dm6]	A	G	4.384e^-6	0.826	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15844015	2R_15844015_SNP [dm3] 2R_19956510_SNP [dm6]	A	C	5.595e^-6	0.826	SYNONYMOUS_CODING CG44623
2L	5511194	2L_5511194_SNP [dm3] 2L_5511194_SNP [dm6]	A	C	5.781e^-6	0.826	INTERGENIC
2R	11813555	2R_11813555_SNP [dm3] 2R_15926050_SNP [dm6]	G	A	5.892e^-6	0.826	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	16407833	2R_16407833_SNP [dm3] 2R_20520328_SNP [dm6]	G	A	6.240e^-6	0.826	INTERGENIC
2R	12116981	2R_12116981_SNP [dm3] 2R_16229476_SNP [dm6]	C	T	7.177e^-6	0.826	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16289150	2R_16289150_SNP [dm3] 2R_20401645_SNP [dm6]	G	A	7.462e^-6	0.826	INTERGENIC
3L	14815465	3L_14815465_SNP [dm3] 3L_14822365_SNP [dm6]	G	A	7.655e^-6	0.826	INTRON CG17839
X	20262270	X_20262270_INS [dm3] X_20391243_INS [dm6]	A	ATCAATAATAATTCAA...	8.445e^-6	0.826	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13505970	2R_13505970_SNP [dm3] 2R_17618465_SNP [dm6]	C	A	8.632e^-6	0.826	UPSTREAM CG44403 INTRON CG10936
3L	413923	3L_413923_SNP [dm3] 3L_413923_SNP [dm6]	A	G	8.668e^-6	0.826	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	3298739	2L_3298739_SNP [dm3] 2L_3298739_SNP [dm6]	T	C	8.807e^-6	0.826	INTRON CG9663	TF binding site BDTNP1_TFBS_da
2R	11648030	2R_11648030_SNP [dm3] 2R_15760525_SNP [dm6]	A	T	9.525e^-6	0.826	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11813744	2R_11813744_SNP [dm3] 2R_15926239_SNP [dm6]	C	T	1.046e^-5	0.826	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad
3L	16896011	3L_16896011_SNP [dm3] 3L_16902911_SNP [dm6]	A	T	1.078e^-5	0.826	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo
X	20262315	X_20262315_DEL [dm3] X_20391288_DEL [dm6]	TGATGTTTCTTAT...	T	1.135e^-5	0.826	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8404903	X_8404903_DEL [dm3] X_8510870_DEL [dm6]	ATTA	A	1.268e^-5	0.826	INTRON CG33181	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15428091	2R_15428091_SNP [dm3] 2R_19540586_SNP [dm6]	C	A	1.322e^-5	0.826	INTRON sm
3R	4400876	3R_4400876_INS [dm3] 3R_8575154_INS [dm6]	T	TT	1.364e^-5	0.826	INTERGENIC
3L	4152861	3L_4152861_SNP [dm3] 3L_4152861_SNP [dm6]	G	A	1.451e^-5	0.826	DOWNSTREAM CG1299 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6899768	3L_6899768_SNP [dm3] 3L_6906668_SNP [dm6]	A	T	1.465e^-5	0.826	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10581745	2R_10581745_SNP [dm3] 2R_14694240_SNP [dm6]	A	G	1.506e^-5	0.826	INTRON mspo
2R	15884106	2R_15884106_SNP [dm3] 2R_19996601_SNP [dm6]	G	C	1.662e^-5	0.826	INTERGENIC
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	1.667e^-5	0.826	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10691485	3L_10691485_SNP [dm3] 3L_10698385_SNP [dm6]	T	G	1.667e^-5	0.826	INTERGENIC
3L	8207850	3L_8207850_SNP [dm3] 3L_8214750_SNP [dm6]	T	C	1.724e^-5	0.826	UPSTREAM CG8012 INTERGENIC
3R	4362491	3R_4362491_SNP [dm3] 3R_8536769_SNP [dm6]	A	G	1.796e^-5	0.826	INTERGENIC
3R	4331834	3R_4331834_SNP [dm3] 3R_8506112_SNP [dm6]	C	T	1.809e^-5	0.826	INTERGENIC	TF binding site mE1_TFBS_cad
X	1931082	X_1931082_SNP [dm3] X_2037049_SNP [dm6]	A	G	1.983e^-5	0.826	UPSTREAM Actn INTRON Actn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4841144	3L_4841144_SNP [dm3] 3L_4841144_SNP [dm6]	C	T	2.043e^-5	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	18962423	2R_18962423_SNP [dm3] 2R_23074900_SNP [dm6]	C	T	2.129e^-5	0.826	UTR_5_PRIME CG3085 UPSTREAM snoRNA:229 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12159601	3L_12159601_SNP [dm3] 3L_12166501_SNP [dm6]	T	C	2.202e^-5	0.826	SYNONYMOUS_CODING Rh7	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4696998	3L_4696998_SNP [dm3] 3L_4696998_SNP [dm6]	G	T	2.224e^-5	0.826	UPSTREAM CG13713 INTRON RhoGEF64C	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	4697013	3L_4697013_SNP [dm3] 3L_4697013_SNP [dm6]	G	A	2.224e^-5	0.826	UPSTREAM CG13713 INTRON RhoGEF64C	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	13139061	3R_13139061_SNP [dm3] 3R_17313339_SNP [dm6]	G	T	2.257e^-5	0.826	INTERGENIC
3R	13175133	3R_13175133_SNP [dm3] 3R_17349411_SNP [dm6]	A	C	2.271e^-5	0.826	INTRON beat-IIa
3R	5087274	3R_5087274_SNP [dm3] 3R_9261552_SNP [dm6]	C	A	2.295e^-5	0.826	INTRON VhaM8.9	TF binding site mE1_TFBS_HSA
3L	1010439	3L_1010439_SNP [dm3] 3L_1010439_SNP [dm6]	A	G	2.379e^-5	0.826	INTRON trio
2L	8929077	2L_8929077_SNP [dm3] 2L_8929077_SNP [dm6]	A	G	2.444e^-5	0.826	NON_SYNONYMOUS_CODING CG34398	TF binding site mE1_TFBS_cad
3L	14565106	3L_14565106_DEL [dm3] 3L_14572006_DEL [dm6]	TT	T	2.509e^-5	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8556612	3L_8556612_SNP [dm3] 3L_8563512_SNP [dm6]	C	G	2.582e^-5	0.826	INTRON rhea
2L	19522029	2L_19522029_SNP [dm3] 2L_19522029_SNP [dm6]	C	T	2.633e^-5	0.826	SYNONYMOUS_CODING CG10132	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1381522	2L_1381522_SNP [dm3] 2L_1381522_SNP [dm6]	T	C	2.640e^-5	0.826	SYNONYMOUS_CODING lea UTR_3_PRIME lea UPSTREAM CR44898 EXON CR44897	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	6600205	3L_6600205_SNP [dm3] 3L_6607105_SNP [dm6]	T	G	2.658e^-5	0.826	INTRON CG8368	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8388326	3R_8388326_SNP [dm3] 3R_12562604_SNP [dm6]	C	T	2.738e^-5	0.826	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
3R	14623691	3R_14623691_INS [dm3] 3R_18797969_INS [dm6]	T	TGT	2.776e^-5	0.826	INTERGENIC
2L	16239804	2L_16239804_SNP [dm3] 2L_16239804_SNP [dm6]	C	T	2.793e^-5	0.826	INTRON CG42817
2R	11823073	2R_11823073_SNP [dm3] 2R_15935568_SNP [dm6]	A	C	2.889e^-5	0.826	NON_SYNONYMOUS_CODING CG8297 UPSTREAM Iap2 DOWNSTREAM Mlf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	15843970	2R_15843970_SNP [dm3] 2R_19956465_SNP [dm6]	C	T	2.923e^-5	0.826	SYNONYMOUS_CODING CG44623
2R	13506075	2R_13506075_SNP [dm3] 2R_17618570_SNP [dm6]	T	G	2.935e^-5	0.826	UPSTREAM CG44403 INTRON CG10936
2R	11647915	2R_11647915_SNP [dm3] 2R_15760410_SNP [dm6]	G	A	2.949e^-5	0.826	INTRON CG30089	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7700782	2L_7700782_SNP [dm3] 2L_7700782_SNP [dm6]	T	C	2.954e^-5	0.826	INTRON Tep2
X	8173885	X_8173885_SNP [dm3] X_8279852_SNP [dm6]	C	A	3.004e^-5	0.826	UTR_3_PRIME nAChRalpha3	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
2L	19079203	2L_19079203_SNP [dm3] 2L_19079203_SNP [dm6]	C	T	3.074e^-5	0.826	UPSTREAM CG10700 DOWNSTREAM Lim3 INTERGENIC
3L	14710885	3L_14710885_DEL [dm3] 3L_14717785_DEL [dm6]	GAAAAA	T	3.111e^-5	0.826	INTRON ome
2L	22020494	2L_22020494_SNP [dm3] 2L_22020494_SNP [dm6]	A	G	3.148e^-5	0.826	DOWNSTREAM CR33987 INTRON tio	TF binding site mE1_TFBS_Trl
2L	19808957	2L_19808957_SNP [dm3] 2L_19808957_SNP [dm6]	T	A	3.221e^-5	0.826	INTRON sick	TF binding site mE1_TFBS_cad
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	3.436e^-5	0.826	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	19079217	2L_19079217_SNP [dm3] 2L_19079217_SNP [dm6]	A	T	3.474e^-5	0.826	UPSTREAM CG10700 DOWNSTREAM Lim3 INTERGENIC
3R	8390929	3R_8390929_SNP [dm3] 3R_12565207_SNP [dm6]	T	C	3.479e^-5	0.826	INTRON Octbeta2R
3L	14813948	3L_14813948_SNP [dm3] 3L_14820848_SNP [dm6]	G	A	3.508e^-5	0.826	INTRON CG17839
2R	15843992	2R_15843992_SNP [dm3] 2R_19956487_SNP [dm6]	G	T	3.513e^-5	0.826	NON_SYNONYMOUS_CODING CG44623
2R	15884102	2R_15884102_SNP [dm3] 2R_19996597_SNP [dm6]	T	G	3.562e^-5	0.826	INTERGENIC
3L	15581190	3L_15581190_SNP [dm3] 3L_15588090_SNP [dm6]	C	A	3.765e^-5	0.826	UTR_5_PRIME CG7656 UPSTREAM RhoGAP71E & 1 other	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_shn mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	8402895	X_8402895_DEL [dm3] X_8508862_DEL [dm6]	TGCG	T	3.769e^-5	0.826	UPSTREAM CG33181 INTRON CG33181
3R	6048371	3R_6048371_SNP [dm3] 3R_10222649_SNP [dm6]	C	T	3.776e^-5	0.826	UPSTREAM CG12420 DOWNSTREAM CG12817 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8507658	2L_8507658_SNP [dm3] 2L_8507658_SNP [dm6]	G	C	3.892e^-5	0.826	UPSTREAM Dh31 INTERGENIC
3R	22435414	3R_22435414_SNP [dm3] 3R_26609692_SNP [dm6]	G	T	3.971e^-5	0.826	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	11809705	2R_11809705_SNP [dm3] 2R_15922200_SNP [dm6]	G	A	3.982e^-5	0.826	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
2L	6581643	2L_6581643_SNP [dm3] 2L_6581643_SNP [dm6]	A	T	4.026e^-5	0.826	INTRON CG11319
2L	11686615	2L_11686615_SNP [dm3] 2L_11686615_SNP [dm6]	A	G	4.037e^-5	0.826	INTERGENIC
2R	15844033	2R_15844033_SNP [dm3] 2R_19956528_SNP [dm6]	T	G	4.082e^-5	0.826	SYNONYMOUS_CODING CG44623
2L	11686657	2L_11686657_SNP [dm3] 2L_11686657_SNP [dm6]	T	C	4.168e^-5	0.826	INTERGENIC
3R	3975957	3R_3975957_SNP [dm3] 3R_8150235_SNP [dm6]	T	C	4.177e^-5	0.826	INTRON grn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	3469607	3R_3469607_SNP [dm3] 3R_7643885_SNP [dm6]	C	T	4.347e^-5	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8507679	2L_8507679_SNP [dm3] 2L_8507679_SNP [dm6]	T	A	4.354e^-5	0.826	UPSTREAM Dh31 INTERGENIC
2L	11686606	2L_11686606_SNP [dm3] 2L_11686606_SNP [dm6]	A	T	4.410e^-5	0.826	INTERGENIC
2L	8507668	2L_8507668_SNP [dm3] 2L_8507668_SNP [dm6]	G	C	4.505e^-5	0.826	UPSTREAM Dh31 INTERGENIC
3R	17931811	3R_17931811_SNP [dm3] 3R_22106089_SNP [dm6]	T	C	4.510e^-5	0.826	DOWNSTREAM CG13407 INTRON CG5778
3L	8582894	3L_8582894_SNP [dm3] 3L_8589794_SNP [dm6]	G	C	4.563e^-5	0.826	UPSTREAM CG43078 INTRON CG43078
X	8678910	X_8678910_SNP [dm3] X_8784877_SNP [dm6]	G	A	4.578e^-5	0.826	INTRON Lim1
X	8678911	X_8678911_SNP [dm3] X_8784878_SNP [dm6]	C	A	4.578e^-5	0.826	INTRON Lim1
X	8678929	X_8678929_SNP [dm3] X_8784896_SNP [dm6]	A	C	4.578e^-5	0.826	INTRON Lim1
3R	8274107	3R_8274107_SNP [dm3] 3R_12448385_SNP [dm6]	G	A	4.593e^-5	0.826	NON_SYNONYMOUS_CODING CG5538 UPSTREAM CG18549 DOWNSTREAM Desat1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	2935012	2R_2935012_SNP [dm3] 2R_7047507_SNP [dm6]	T	A	4.626e^-5	0.826	NON_SYNONYMOUS_CODING Tsp42El
2L	11686609	2L_11686609_SNP [dm3] 2L_11686609_SNP [dm6]	G	A	4.643e^-5	0.826	INTERGENIC
3L	14388889	3L_14388889_SNP [dm3] 3L_14395789_SNP [dm6]	G	A	5.027e^-5	0.826	INTERGENIC
X	20215452	X_20215452_INS [dm3] X_20344425_INS [dm6]	AC	TTATGCCG	5.136e^-5	0.826	INTERGENIC
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	5.137e^-5	0.826	INTRON dnc
3L	15728431	3L_15728431_SNP [dm3] 3L_15735331_SNP [dm6]	A	G	5.157e^-5	0.826	INTERGENIC
X	8678952	X_8678952_SNP [dm3] X_8784919_SNP [dm6]	T	C	5.164e^-5	0.826	INTRON Lim1
2L	3417494	2L_3417494_SNP [dm3] 2L_3417494_SNP [dm6]	A	T	5.234e^-5	0.826	UTR_3_PRIME CG31952 INTRON pgant2
2L	11686631	2L_11686631_DEL [dm3] 2L_11686631_DEL [dm6]	ATTACAGGTAATA...	T	5.255e^-5	0.826	INTERGENIC
3L	412168	3L_412168_SNP [dm3] 3L_412168_SNP [dm6]	G	A	5.292e^-5	0.826	INTERGENIC
3R	23141757	3R_23141757_SNP [dm3] 3R_27316035_SNP [dm6]	T	A	5.323e^-5	0.826	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	20262202	X_20262202_SNP [dm3] X_20391175_SNP [dm6]	C	A	5.345e^-5	0.826	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20276949	X_20276949_SNP [dm3] X_20405922_SNP [dm6]	G	A	5.409e^-5	0.826	SYNONYMOUS_CODING HERC2	TF binding site mE1_TFBS_chinmo
X	1718768	X_1718768_DEL [dm3] X_1824735_DEL [dm6]	CGATTC	C	5.487e^-5	0.826	UPSTREAM CG42666 INTRON CG42666	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	15728441	3L_15728441_SNP [dm3] 3L_15735341_SNP [dm6]	C	T	5.490e^-5	0.826	INTERGENIC
2R	11812325	2R_11812325_SNP [dm3] 2R_15924820_SNP [dm6]	G	A	5.598e^-5	0.826	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad
2L	5758264	2L_5758264_SNP [dm3] 2L_5758264_SNP [dm6]	A	C	5.643e^-5	0.826	INTRON CG11030	TF binding site mE1_TFBS_cad
X	20215260	X_20215260_SNP [dm3] X_20344233_SNP [dm6]	A	C	5.664e^-5	0.826	INTERGENIC	transposable element FlyBase
3L	10699904	3L_10699904_INS [dm3] 3L_10706804_INS [dm6]	A	AA	5.695e^-5	0.826	INTERGENIC
X	8404253	X_8404253_SNP [dm3] X_8510220_SNP [dm6]	G	A	5.765e^-5	0.826	SPLICE_SITE_REGION CG33181 UTR_5_PRIME CG33181 INTRON CG33181	TF binding site BDTNP1_TFBS_dl
2R	13506030	2R_13506030_SNP [dm3] 2R_17618525_SNP [dm6]	C	A	5.901e^-5	0.826	UPSTREAM CG44403 INTRON CG10936
2L	8505251	2L_8505251_SNP [dm3] 2L_8505251_SNP [dm6]	C	G	5.931e^-5	0.826	INTRON Dh31
X	20215420	X_20215420_SNP [dm3] X_20344393_SNP [dm6]	A	G	5.958e^-5	0.826	INTERGENIC
2L	16239641	2L_16239641_SNP [dm3] 2L_16239641_SNP [dm6]	T	C	6.012e^-5	0.826	INTRON CG42817
2R	11812614	2R_11812614_SNP [dm3] 2R_15925109_SNP [dm6]	G	A	6.039e^-5	0.826	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	3090995	3L_3090995_SNP [dm3] 3L_3090995_SNP [dm6]	C	T	6.082e^-5	0.826	UTR_3_PRIME Cht7 DOWNSTREAM CG11486 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	3417310	2L_3417310_SNP [dm3] 2L_3417310_SNP [dm6]	G	A	6.137e^-5	0.826	NON_SYNONYMOUS_CODING CG31952 INTRON pgant2
X	22359715	X_22359715_SNP [dm3] X_22957879_SNP [dm6]	A	C	6.211e^-5	0.826	DOWNSTREAM CR45502 & 1 other INTERGENIC
3R	4108029	3R_4108029_SNP [dm3] 3R_8282307_SNP [dm6]	G	T	6.229e^-5	0.826	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	12899010	3L_12899010_SNP [dm3] 3L_12905910_SNP [dm6]	T	A	6.243e^-5	0.826	INTERGENIC
X	20262200	X_20262200_SNP [dm3] X_20391173_SNP [dm6]	G	A	6.283e^-5	0.826	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10691472	3L_10691472_SNP [dm3] 3L_10698372_SNP [dm6]	T	A	6.415e^-5	0.826	INTERGENIC
3R	10786018	3R_10786018_SNP [dm3] 3R_14960296_SNP [dm6]	G	A	6.436e^-5	0.826	INTERGENIC
3L	10694223	3L_10694223_SNP [dm3] 3L_10701123_SNP [dm6]	C	A	6.584e^-5	0.826	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13242799	2R_13242799_SNP [dm3] 2R_17355294_SNP [dm6]	T	G	6.598e^-5	0.826	INTRON mbl
3R	23141761	3R_23141761_INS [dm3] 3R_27316039_INS [dm6]	G	GG	6.618e^-5	0.826	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	23141751	3R_23141751_SNP [dm3] 3R_27316029_SNP [dm6]	C	A	6.644e^-5	0.826	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	12527578	2L_12527578_SNP [dm3] 2L_12527578_SNP [dm6]	C	A	6.689e^-5	0.826	INTRON bun	TF binding site BDTNP1_TFBS_dl
2L	12527584	2L_12527584_SNP [dm3] 2L_12527584_SNP [dm6]	A	T	6.699e^-5	0.826	INTRON bun	TF binding site BDTNP1_TFBS_dl
2R	16314370	2R_16314370_SNP [dm3] 2R_20426865_SNP [dm6]	G	C	6.711e^-5	0.826	INTRON CG12484
2R	13415564	2R_13415564_SNP [dm3] 2R_17528059_SNP [dm6]	G	A	6.764e^-5	0.826	SYNONYMOUS_CODING Patronin
X	14121437	X_14121437_SNP [dm3] X_14227404_SNP [dm6]	T	C	6.838e^-5	0.826	SYNONYMOUS_CODING mRpL38 DOWNSTREAM CG42271	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	5085332	3R_5085332_SNP [dm3] 3R_9259610_SNP [dm6]	C	A	6.854e^-5	0.826	INTRON CG8436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	9922147	3R_9922147_SNP [dm3] 3R_14096425_SNP [dm6]	G	A	6.873e^-5	0.826	DOWNSTREAM CG9920 INTRON CCHa1
X	20554820	X_20554820_SNP [dm3] X_20683793_SNP [dm6]	T	C	6.889e^-5	0.826	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
2R	9494569	2R_9494569_SNP [dm3] 2R_13607064_SNP [dm6]	A	G	7.027e^-5	0.826	INTERGENIC
3L	19350405	3L_19350405_SNP [dm3] 3L_19357305_SNP [dm6]	C	T	7.060e^-5	0.826	INTRON CG32206	TF binding site BDTNP1_TFBS_twi
2R	20317487	2R_20317487_SNP [dm3] 2R_24429964_SNP [dm6]	G	A	7.083e^-5	0.826	INTRON CG15873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16239657	2L_16239657_SNP [dm3] 2L_16239657_SNP [dm6]	C	T	7.112e^-5	0.826	INTRON CG42817
3L	8745109	3L_8745109_SNP [dm3] 3L_8752009_SNP [dm6]	A	G	7.117e^-5	0.826	UPSTREAM CR44527 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14623556	3R_14623556_SNP [dm3] 3R_18797834_SNP [dm6]	G	A	7.211e^-5	0.826	INTERGENIC
3R	10435085	3R_10435085_SNP [dm3] 3R_14609363_SNP [dm6]	G	T	7.226e^-5	0.826	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	411916	3L_411916_SNP [dm3] 3L_411916_SNP [dm6]	A	G	7.254e^-5	0.826	INTERGENIC
3L	10694245	3L_10694245_SNP [dm3] 3L_10701145_SNP [dm6]	G	A	7.396e^-5	0.826	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25806119	3R_25806119_SNP [dm3] 3R_29980397_SNP [dm6]	C	T	7.415e^-5	0.826	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	15428084	2R_15428084_SNP [dm3] 2R_19540579_SNP [dm6]	A	G	7.420e^-5	0.826	INTRON sm
2R	10998491	2R_10998491_SNP [dm3] 2R_15110986_SNP [dm6]	A	G	7.444e^-5	0.826	INTERGENIC
3R	5962889	3R_5962889_SNP [dm3] 3R_10137167_SNP [dm6]	C	A	7.512e^-5	0.826	INTRON tws
3L	11919322	3L_11919322_SNP [dm3] 3L_11926222_SNP [dm6]	C	T	7.538e^-5	0.826	INTRON CG44837	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	411991	3L_411991_SNP [dm3] 3L_411991_SNP [dm6]	A	T	7.554e^-5	0.826	INTERGENIC
X	16051314	X_16051314_SNP [dm3] X_16157281_SNP [dm6]	C	T	7.624e^-5	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20783402	2R_20783402_SNP [dm3] 2R_24895879_SNP [dm6]	T	C	7.627e^-5	0.826	INTRON NaCP60E	TF binding site mE1_TFBS_chinmo
2L	20052673	2L_20052673_SNP [dm3] 2L_20052673_SNP [dm6]	C	T	7.723e^-5	0.826	INTRON sNPF
2L	22306203	2L_22306203_SNP [dm3] 2L_22306203_SNP [dm6]	T	C	7.791e^-5	0.826	INTERGENIC
3L	11791042	3L_11791042_SNP [dm3] 3L_11797942_SNP [dm6]	A	G	7.919e^-5	0.826	SYNONYMOUS_CODING Klp68D	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12246798	X_12246798_SNP [dm3] X_12352765_SNP [dm6]	C	T	7.999e^-5	0.826	INTERGENIC
2L	8505284	2L_8505284_SNP [dm3] 2L_8505284_SNP [dm6]	C	A	8.036e^-5	0.826	INTRON Dh31
3R	14515011	3R_14515011_SNP [dm3] 3R_18689289_SNP [dm6]	G	A	8.036e^-5	0.826	NON_SYNONYMOUS_CODING Muc91C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4956241	2R_4956241_SNP [dm3] 2R_9068736_SNP [dm6]	T	G	8.080e^-5	0.826	UPSTREAM ana INTRON ana
3L	14816333	3L_14816333_SNP [dm3] 3L_14823233_SNP [dm6]	G	A	8.100e^-5	0.826	INTRON CG17839
X	4206654	X_4206654_SNP [dm3] X_4312621_SNP [dm6]	G	A	8.209e^-5	0.826	UPSTREAM CG15579 INTRON CR44957
X	21930162	X_21930162_SNP [dm3] X_22528326_SNP [dm6]	C	T	8.211e^-5	0.826	SYNONYMOUS_CODING CG17600
2R	13415561	2R_13415561_SNP [dm3] 2R_17528056_SNP [dm6]	A	G	8.281e^-5	0.826	SYNONYMOUS_CODING Patronin
3L	10694292	3L_10694292_SNP [dm3] 3L_10701192_SNP [dm6]	G	C	8.323e^-5	0.826	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2669602	2L_2669602_SNP [dm3] 2L_2669602_SNP [dm6]	G	T	8.403e^-5	0.826	UPSTREAM Gr23a INTERGENIC
X	2926031	X_2926031_SNP [dm3] X_3031998_SNP [dm6]	C	A	8.421e^-5	0.826	INTRON kirre
3R	25191369	3R_25191369_SNP [dm3] 3R_29365647_SNP [dm6]	A	G	8.499e^-5	0.826	INTERGENIC
2L	19079237	2L_19079237_SNP [dm3] 2L_19079237_SNP [dm6]	C	T	8.543e^-5	0.826	UPSTREAM CG10700 DOWNSTREAM Lim3 INTERGENIC
X	3136990	X_3136990_SNP [dm3] X_3242957_SNP [dm6]	A	G	8.672e^-5	0.826	UPSTREAM ng3 DOWNSTREAM ng1 & 1 other INTRON dnc
3R	15340722	3R_15340722_SNP [dm3] 3R_19515000_SNP [dm6]	G	C	8.805e^-5	0.826	INTRON Dys
3L	11919332	3L_11919332_SNP [dm3] 3L_11926232_SNP [dm6]	A	G	8.807e^-5	0.826	INTRON CG44837	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	21930168	X_21930168_SNP [dm3] X_22528332_SNP [dm6]	T	G	8.832e^-5	0.826	SYNONYMOUS_CODING CG17600
2L	1931534	2L_1931534_SNP [dm3] 2L_1931534_SNP [dm6]	A	G	8.937e^-5	0.826	INTRON CG7337
3L	411206	3L_411206_INS [dm3] 3L_411206_INS [dm6]	C	CA	8.944e^-5	0.826	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21900436	3R_21900436_SNP [dm3] 3R_26074714_SNP [dm6]	A	G	9.024e^-5	0.826	INTERGENIC
2R	15844139	2R_15844139_SNP [dm3] 2R_19956634_SNP [dm6]	C	T	9.270e^-5	0.826	SYNONYMOUS_CODING CG44623
3L	1101004	3L_1101004_SNP [dm3] 3L_1101004_SNP [dm6]	C	T	9.304e^-5	0.826	UTR_5_PRIME bab1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2R	16919631	2R_16919631_SNP [dm3] 2R_21032126_SNP [dm6]	G	A	9.329e^-5	0.826	INTERGENIC
2R	10998493	2R_10998493_SNP [dm3] 2R_15110988_SNP [dm6]	A	G	9.389e^-5	0.826	INTERGENIC
3L	14974486	3L_14974486_SNP [dm3] 3L_14981386_SNP [dm6]	A	G	9.439e^-5	0.826	SYNONYMOUS_CODING CG3349
3R	13139524	3R_13139524_SNP [dm3] 3R_17313802_SNP [dm6]	G	T	9.462e^-5	0.826	INTERGENIC
2L	19079235	2L_19079235_SNP [dm3] 2L_19079235_SNP [dm6]	T	C	9.464e^-5	0.826	UPSTREAM CG10700 DOWNSTREAM Lim3 INTERGENIC
3R	20489476	3R_20489476_SNP [dm3] 3R_24663754_SNP [dm6]	G	T	9.532e^-5	0.826	INTRON slo	regulatory region REDfly_CRMs
3L	9873577	3L_9873577_SNP [dm3] 3L_9880477_SNP [dm6]	T	C	9.541e^-5	0.826	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
3L	15585993	3L_15585993_SNP [dm3] 3L_15592893_SNP [dm6]	C	G	9.568e^-5	0.826	INTRON RhoGAP71E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16896018	3L_16896018_SNP [dm3] 3L_16902918_SNP [dm6]	G	A	9.578e^-5	0.826	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo
X	2926734	X_2926734_SNP [dm3] X_3032701_SNP [dm6]	C	A	9.643e^-5	0.826	INTRON kirre
3L	6055459	3L_6055459_SNP [dm3] 3L_6062359_SNP [dm6]	G	T	9.712e^-5	0.826	SYNONYMOUS_CODING CG10472 DOWNSTREAM CG6592	TF binding site mE1_TFBS_cad
2L	8505282	2L_8505282_SNP [dm3] 2L_8505282_SNP [dm6]	C	A	9.712e^-5	0.826	INTRON Dh31
2R	16919632	2R_16919632_SNP [dm3] 2R_21032127_SNP [dm6]	G	A	9.796e^-5	0.826	INTERGENIC
3L	11919346	3L_11919346_SNP [dm3] 3L_11926246_SNP [dm6]	A	G	9.847e^-5	0.826	INTRON CG44837	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12527581	2L_12527581_SNP [dm3] 2L_12527581_SNP [dm6]	A	G	9.898e^-5	0.826	INTRON bun	TF binding site BDTNP1_TFBS_dl
X	20215352	X_20215352_INS [dm3] X_20344325_INS [dm6]	A	AGTTGGACAGTCGGACA...	9.970e^-5	0.826	INTERGENIC	transposable element FlyBase
X	10895007	X_10895007_SNP [dm3] X_11000974_SNP [dm6]	A	G	9.976e^-5	0.826	INTRON CG42339
2L	3298708	2L_3298708_INS [dm3] 2L_3298708_INS [dm6]	T	TGCGGCCAAGCACTTTGTTA...	9.979e^-5	0.826	INTRON CG9663	TF binding site BDTNP1_TFBS_da
2R	17887141	2R_17887141_SNP [dm3] 2R_21999636_SNP [dm6]	C	A	1.006e^-4	0.826	INTRON CG34370
2R	4945841	2R_4945841_SNP [dm3] 2R_9058336_SNP [dm6]	T	A	1.013e^-4	0.826	INTRON CG13743
3L	4841147	3L_4841147_SNP [dm3] 3L_4841147_SNP [dm6]	C	A	1.019e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	15585964	3L_15585964_SNP [dm3] 3L_15592864_SNP [dm6]	C	T	1.019e^-4	0.826	INTRON RhoGAP71E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10998501	2R_10998501_SNP [dm3] 2R_15110996_SNP [dm6]	T	G	1.025e^-4	0.826	INTERGENIC
2R	15844029	2R_15844029_SNP [dm3] 2R_19956524_SNP [dm6]	T	C	1.033e^-4	0.826	NON_SYNONYMOUS_CODING CG44623
3L	13870686	3L_13870686_SNP [dm3] 3L_13877586_SNP [dm6]	T	G	1.035e^-4	0.826	INTRON dysc
3R	14623513	3R_14623513_SNP [dm3] 3R_18797791_SNP [dm6]	T	C	1.049e^-4	0.826	INTERGENIC
2L	18908808	2L_18908808_SNP [dm3] 2L_18908808_SNP [dm6]	G	T	1.054e^-4	0.826	INTERGENIC
2L	3298712	2L_3298712_SNP [dm3] 2L_3298712_SNP [dm6]	A	G	1.056e^-4	0.826	INTRON CG9663	TF binding site BDTNP1_TFBS_da
X	20215435	X_20215435_SNP [dm3] X_20344408_SNP [dm6]	G	A	1.059e^-4	0.826	INTERGENIC
2L	12415089	2L_12415089_SNP [dm3] 2L_12415089_SNP [dm6]	G	A	1.071e^-4	0.826	INTRON vir-1
3L	14541160	3L_14541160_SNP [dm3] 3L_14548060_SNP [dm6]	T	C	1.074e^-4	0.826	INTRON CG9238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5605948	X_5605948_INS [dm3] X_5711915_INS [dm6]	G	ATGGTGTGTGTGTATGGTAA...	1.083e^-4	0.826	INTRON CG33080
3R	14623430	3R_14623430_SNP [dm3] 3R_18797708_SNP [dm6]	A	G	1.083e^-4	0.826	INTERGENIC
3R	5709131	3R_5709131_SNP [dm3] 3R_9883409_SNP [dm6]	C	G	1.085e^-4	0.826	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19448906	3L_19448906_SNP [dm3] 3L_19455806_SNP [dm6]	A	G	1.086e^-4	0.826	DOWNSTREAM CR45434 INTERGENIC
X	5605945	X_5605945_SNP [dm3] X_5711912_SNP [dm6]	A	T	1.086e^-4	0.826	INTRON CG33080
2L	7121059	2L_7121059_SNP [dm3] 2L_7121059_SNP [dm6]	T	C	1.089e^-4	0.826	INTRON Pvf3	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3L	16320513	3L_16320513_SNP [dm3] 3L_16327413_SNP [dm6]	A	G	1.090e^-4	0.826	SYNONYMOUS_CODING CG13038 UPSTREAM CG13040 & 1 other
2L	16553993	2L_16553993_SNP [dm3] 2L_16553993_SNP [dm6]	G	C	1.091e^-4	0.826	INTRON CG42389
2R	17267393	2R_17267393_SNP [dm3] 2R_21379888_SNP [dm6]	A	C	1.104e^-4	0.826	UPSTREAM cv-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	15365250	2L_15365250_SNP [dm3] 2L_15365250_SNP [dm6]	C	T	1.105e^-4	0.826	INTERGENIC
2R	11576437	2R_11576437_SNP [dm3] 2R_15688932_SNP [dm6]	T	C	1.115e^-4	0.826	NON_SYNONYMOUS_CODING Cep89 UPSTREAM CG30090	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	21078557	2L_21078557_SNP [dm3] 2L_21078557_SNP [dm6]	G	T	1.115e^-4	0.826	INTRON tadr
2L	7154665	2L_7154665_SNP [dm3] 2L_7154665_SNP [dm6]	A	C	1.125e^-4	0.826	INTRON Pvf3
2L	19901797	2L_19901797_DEL [dm3] 2L_19901797_DEL [dm6]	TAAAAACAAAA...	T	1.129e^-4	0.826	INTRON sick
X	3377694	X_3377694_SNP [dm3] X_3483661_SNP [dm6]	G	A	1.136e^-4	0.826	SYNONYMOUS_CODING CG10802 DOWNSTREAM CG14270 INTRON CR44999	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	3957107	3R_3957107_SNP [dm3] 3R_8131385_SNP [dm6]	T	A	1.148e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	11791393	3L_11791393_SNP [dm3] 3L_11798293_SNP [dm6]	A	G	1.149e^-4	0.826	SYNONYMOUS_CODING Klp68D DOWNSTREAM CG10361	TF binding site mE1_TFBS_chinmo
3L	14815037	3L_14815037_SNP [dm3] 3L_14821937_SNP [dm6]	A	C	1.154e^-4	0.826	INTRON CG17839
2L	15281424	2L_15281424_SNP [dm3] 2L_15281424_SNP [dm6]	C	G	1.157e^-4	0.826	DOWNSTREAM CR45349 INTERGENIC
3L	20821277	3L_20821277_SNP [dm3] 3L_20828177_SNP [dm6]	C	T	1.162e^-4	0.826	UTR_5_PRIME Pka-R1 UPSTREAM Pka-R1 INTRON Pka-R1
3R	13570329	3R_13570329_SNP [dm3] 3R_17744607_SNP [dm6]	A	C	1.167e^-4	0.826	INTRON TyrRII	TF binding site mE1_TFBS_cad
3L	19472074	3L_19472074_SNP [dm3] 3L_19478974_SNP [dm6]	G	A	1.173e^-4	0.826	UPSTREAM CR32207 DOWNSTREAM CR42842 INTERGENIC
2R	15844090	2R_15844090_SNP [dm3] 2R_19956585_SNP [dm6]	T	A	1.173e^-4	0.826	SPLICE_SITE_REGION CG44623 INTRON CG44623
3R	15154149	3R_15154149_SNP [dm3] 3R_19328427_SNP [dm6]	A	T	1.175e^-4	0.826	UPSTREAM CR44175 INTERGENIC
2R	11823051	2R_11823051_SNP [dm3] 2R_15935546_SNP [dm6]	G	A	1.175e^-4	0.826	SYNONYMOUS_CODING CG8297 UPSTREAM Iap2 DOWNSTREAM Mlf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10085825	2L_10085825_SNP [dm3] 2L_10085825_SNP [dm6]	C	T	1.179e^-4	0.826	INTRON CG44153
3L	4164481	3L_4164481_SNP [dm3] 3L_4164481_SNP [dm6]	A	T	1.184e^-4	0.826	SYNONYMOUS_CODING mas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8137681	2R_8137681_SNP [dm3] 2R_12250176_SNP [dm6]	A	C	1.185e^-4	0.826	INTERGENIC
2R	12520352	2R_12520352_SNP [dm3] 2R_16632847_SNP [dm6]	G	T	1.187e^-4	0.826	SYNONYMOUS_CODING Alk	TF binding site mE1_TFBS_cad
2R	19894337	2R_19894337_SNP [dm3] 2R_24006814_SNP [dm6]	A	G	1.188e^-4	0.826	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19250478	2L_19250478_SNP [dm3] 2L_19250478_SNP [dm6]	C	T	1.191e^-4	0.826	INTERGENIC
2R	7076790	2R_7076790_SNP [dm3] 2R_11189285_SNP [dm6]	G	A	1.200e^-4	0.826	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15047041	3R_15047041_DEL [dm3] 3R_19221319_DEL [dm6]	CACATAATAC	C	1.222e^-4	0.826	INTRON vib	TF binding site mE1_TFBS_inv
2R	16053170	2R_16053170_SNP [dm3] 2R_20165665_SNP [dm6]	T	C	1.226e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	11686646	2L_11686646_SNP [dm3] 2L_11686646_SNP [dm6]	A	T	1.229e^-4	0.826	INTERGENIC
2R	2933537	2R_2933537_SNP [dm3] 2R_7046032_SNP [dm6]	T	A	1.232e^-4	0.826	INTRON Tsp42El	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	7121775	2L_7121775_SNP [dm3] 2L_7121775_SNP [dm6]	C	T	1.240e^-4	0.826	INTRON Pvf3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	21900432	3R_21900432_SNP [dm3] 3R_26074710_SNP [dm6]	C	T	1.240e^-4	0.826	INTERGENIC
2L	9501642	2L_9501642_SNP [dm3] 2L_9501642_SNP [dm6]	G	C	1.241e^-4	0.826	INTRON CG33298
2L	3298717	2L_3298717_SNP [dm3] 2L_3298717_SNP [dm6]	T	G	1.247e^-4	0.826	INTRON CG9663	TF binding site BDTNP1_TFBS_da
3R	8638979	3R_8638979_SNP [dm3] 3R_12813257_SNP [dm6]	C	G	1.248e^-4	0.826	INTRON CG31345
X	8173882	X_8173882_SNP [dm3] X_8279849_SNP [dm6]	T	C	1.249e^-4	0.826	UTR_3_PRIME nAChRalpha3	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
3R	21906433	3R_21906433_DEL [dm3] 3R_26080711_DEL [dm6]	GTCTTTTCCCTCC...	G	1.251e^-4	0.826	INTRON dys
3L	8582618	3L_8582618_SNP [dm3] 3L_8589518_SNP [dm6]	T	C	1.261e^-4	0.826	UPSTREAM CG43078 INTRON CG43078
2R	19484343	2R_19484343_SNP [dm3] 2R_23596820_SNP [dm6]	G	A	1.265e^-4	0.826	INTRON apt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3298722	2L_3298722_INS [dm3] 2L_3298722_INS [dm6]	C	TAT	1.265e^-4	0.826	INTRON CG9663	TF binding site BDTNP1_TFBS_da
3L	4545922	3L_4545922_SNP [dm3] 3L_4545922_SNP [dm6]	G	A	1.271e^-4	0.826	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	10104073	2L_10104073_SNP [dm3] 2L_10104073_SNP [dm6]	T	C	1.279e^-4	0.826	INTRON CG44153 & 1 other
2L	13948410	2L_13948410_SNP [dm3] 2L_13948410_SNP [dm6]	A	T	1.289e^-4	0.826	UPSTREAM CG16884 INTRON Ance-3
2R	15844091	2R_15844091_SNP [dm3] 2R_19956586_SNP [dm6]	T	A	1.289e^-4	0.826	SPLICE_SITE_REGION CG44623 INTRON CG44623
3L	11632309	3L_11632309_SNP [dm3] 3L_11639209_SNP [dm6]	T	A	1.289e^-4	0.826	INTRON CG32091
3L	8547757	3L_8547757_SNP [dm3] 3L_8554657_SNP [dm6]	A	T	1.303e^-4	0.826	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	1931456	X_1931456_SNP [dm3] X_2037423_SNP [dm6]	T	C	1.305e^-4	0.826	UPSTREAM Actn INTRON Actn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	18454882	X_18454882_SNP [dm3] X_18560849_SNP [dm6]	G	A	1.310e^-4	0.826	INTRON Bx
2R	12821148	2R_12821148_SNP [dm3] 2R_16933643_SNP [dm6]	C	T	1.316e^-4	0.826	INTRON Pkc53E	TF binding site BDTNP1_TFBS_twi
X	8402577	X_8402577_SNP [dm3] X_8508544_SNP [dm6]	G	A	1.343e^-4	0.826	INTRON CG33181
3L	312104	3L_312104_SNP [dm3] 3L_312104_SNP [dm6]	C	T	1.344e^-4	0.826	UPSTREAM fwd INTRON fwd	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	13539767	2R_13539767_SNP [dm3] 2R_17652262_SNP [dm6]	C	A	1.345e^-4	0.826	INTRON CCHa1-R
2R	13242811	2R_13242811_SNP [dm3] 2R_17355306_SNP [dm6]	T	A	1.346e^-4	0.826	INTRON mbl
2L	13959511	2L_13959511_SNP [dm3] 2L_13959511_SNP [dm6]	T	C	1.349e^-4	0.826	INTRON NimA
3L	4737896	3L_4737896_SNP [dm3] 3L_4737896_SNP [dm6]	G	A	1.349e^-4	0.826	INTRON RhoGEF64C
2R	11849590	2R_11849590_SNP [dm3] 2R_15962085_SNP [dm6]	T	G	1.351e^-4	0.826	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17927090	3L_17927090_SNP [dm3] 3L_17933990_SNP [dm6]	T	C	1.354e^-4	0.826	UPSTREAM CG43173 & 1 other INTERGENIC
3R	4346206	3R_4346206_SNP [dm3] 3R_8520484_SNP [dm6]	A	T	1.360e^-4	0.826	NON_SYNONYMOUS_CODING CG11737
2L	13158301	2L_13158301_SNP [dm3] 2L_13158301_SNP [dm6]	T	A	1.360e^-4	0.826	UPSTREAM Pk34A INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	10998512	2R_10998512_SNP [dm3] 2R_15111007_SNP [dm6]	G	T	1.361e^-4	0.826	INTERGENIC
X	1930114	X_1930114_SNP [dm3] X_2036081_SNP [dm6]	T	A	1.375e^-4	0.826	INTRON Actn	TF binding site BDTNP1_TFBS_dl
2R	11170047	2R_11170047_SNP [dm3] 2R_15282542_SNP [dm6]	T	C	1.382e^-4	0.826	INTRON Trpm
3L	426184	3L_426184_SNP [dm3] 3L_426184_SNP [dm6]	A	T	1.391e^-4	0.826	INTERGENIC
3L	12165634	3L_12165634_SNP [dm3] 3L_12172534_SNP [dm6]	T	G	1.391e^-4	0.826	INTRON Rh7
3L	391927	3L_391927_INS [dm3] 3L_391927_INS [dm6]	A	AATTGGAT	1.393e^-4	0.826	DOWNSTREAM CR45378 INTRON trh
3L	14710843	3L_14710843_SNP [dm3] 3L_14717743_SNP [dm6]	T	A	1.409e^-4	0.826	INTRON ome
3R	14623497	3R_14623497_SNP [dm3] 3R_18797775_SNP [dm6]	A	T	1.412e^-4	0.826	INTERGENIC
2L	16033629	2L_16033629_SNP [dm3] 2L_16033629_SNP [dm6]	A	T	1.414e^-4	0.826	INTRON beat-Ic
3L	14817946	3L_14817946_SNP [dm3] 3L_14824846_SNP [dm6]	A	G	1.414e^-4	0.826	INTRON CG17839
3L	13272867	3L_13272867_SNP [dm3] 3L_13279767_SNP [dm6]	A	G	1.420e^-4	0.826	UPSTREAM tRNA:CR32123:Psi DOWNSTREAM caps INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	4176364	2R_4176364_SNP [dm3] 2R_8288859_SNP [dm6]	T	C	1.420e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	8670343	3R_8670343_SNP [dm3] 3R_12844621_SNP [dm6]	G	A	1.422e^-4	0.826	INTRON beat-Va
2R	1578216	2R_1578216_SNP [dm3] 2R_5690711_SNP [dm6]	G	T	1.428e^-4	0.826	INTRON scaf	TF binding site BDTNP1_TFBS_dl
3L	10693458	3L_10693458_SNP [dm3] 3L_10700358_SNP [dm6]	A	C	1.430e^-4	0.826	INTERGENIC
X	18328961	X_18328961_SNP [dm3] X_18434928_SNP [dm6]	C	G	1.430e^-4	0.826	DOWNSTREAM CG32548 INTERGENIC
3R	2945058	3R_2945058_SNP [dm3] 3R_7119336_SNP [dm6]	T	A	1.437e^-4	0.826	INTRON Alh
2L	16379412	2L_16379412_SNP [dm3] 2L_16379412_SNP [dm6]	T	C	1.439e^-4	0.826	INTERGENIC
3L	4741046	3L_4741046_SNP [dm3] 3L_4741046_SNP [dm6]	G	A	1.442e^-4	0.826	INTRON RhoGEF64C
2R	8132873	2R_8132873_SNP [dm3] 2R_12245368_SNP [dm6]	C	A	1.443e^-4	0.826	UPSTREAM CG43244 INTERGENIC
2R	16361612	2R_16361612_SNP [dm3] 2R_20474107_SNP [dm6]	A	G	1.454e^-4	0.826	INTRON CG12484
2L	10082495	2L_10082495_SNP [dm3] 2L_10082495_SNP [dm6]	G	A	1.455e^-4	0.826	INTRON CG44153
3L	18641707	3L_18641707_DEL [dm3] 3L_18648607_DEL [dm6]	TG	T	1.455e^-4	0.826	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_twi
3R	15154147	3R_15154147_SNP [dm3] 3R_19328425_SNP [dm6]	T	C	1.458e^-4	0.826	UPSTREAM CR44175 INTERGENIC
2R	11812449	2R_11812449_SNP [dm3] 2R_15924944_SNP [dm6]	G	A	1.459e^-4	0.826	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad
X	8678837	X_8678837_SNP [dm3] X_8784804_SNP [dm6]	C	T	1.463e^-4	0.826	INTRON Lim1
2R	17696524	2R_17696524_SNP [dm3] 2R_21809019_SNP [dm6]	T	C	1.464e^-4	0.826	INTERGENIC
3R	20489343	3R_20489343_SNP [dm3] 3R_24663621_SNP [dm6]	G	A	1.467e^-4	0.826	INTRON slo	regulatory region REDfly_CRMs
3R	24357321	3R_24357321_SNP [dm3] 3R_28531599_SNP [dm6]	T	A	1.470e^-4	0.826	INTRON Ppn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	14871517	2L_14871517_INS [dm3] 2L_14871517_INS [dm6]	A	AC	1.475e^-4	0.826	INTRON CG4480
3L	18816782	3L_18816782_INS [dm3] 3L_18823682_INS [dm6]	A	AACATTAACTTCATT...	1.478e^-4	0.826	INTRON Cat	TF binding site BDTNP1_TFBS_dl
2L	3298728	2L_3298728_INS [dm3] 2L_3298728_INS [dm6]	T	TCAGGAAATTAACCTATCCA...	1.478e^-4	0.826	INTRON CG9663	TF binding site BDTNP1_TFBS_da
2L	19737343	2L_19737343_SNP [dm3] 2L_19737343_SNP [dm6]	G	T	1.482e^-4	0.826	DOWNSTREAM Nf-YB INTERGENIC
X	14511435	X_14511435_SNP [dm3] X_14617402_SNP [dm6]	A	T	1.482e^-4	0.826	INTRON NetA
2R	20251831	2R_20251831_SNP [dm3] 2R_24364308_SNP [dm6]	G	T	1.493e^-4	0.826	INTRON bs & 1 other
3R	21582163	3R_21582163_SNP [dm3] 3R_25756441_SNP [dm6]	A	G	1.497e^-4	0.826	INTRON LpR1
2L	3558908	2L_3558908_SNP [dm3] 2L_3558908_SNP [dm6]	C	A	1.500e^-4	0.826	INTERGENIC
3L	9990656	3L_9990656_SNP [dm3] 3L_9997556_SNP [dm6]	A	G	1.502e^-4	0.826	INTRON dpr6
X	20215234	X_20215234_SNP [dm3] X_20344207_SNP [dm6]	C	A	1.506e^-4	0.826	INTERGENIC	transposable element FlyBase
2L	3755318	2L_3755318_SNP [dm3] 2L_3755318_SNP [dm6]	G	A	1.508e^-4	0.826	DOWNSTREAM CG10019 INTERGENIC
2R	15197998	2R_15197998_SNP [dm3] 2R_19310493_SNP [dm6]	T	C	1.508e^-4	0.826	SYNONYMOUS_CODING EndoB DOWNSTREAM Rgk1
3L	11901083	3L_11901083_SNP [dm3] 3L_11907983_SNP [dm6]	A	C	1.519e^-4	0.826	INTRON CG44837
3R	25352008	3R_25352008_SNP [dm3] 3R_29526286_SNP [dm6]	G	A	1.519e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_inv
3L	11901084	3L_11901084_SNP [dm3] 3L_11907984_SNP [dm6]	T	C	1.520e^-4	0.826	INTRON CG44837
3L	11901090	3L_11901090_SNP [dm3] 3L_11907990_SNP [dm6]	C	T	1.520e^-4	0.826	INTRON CG44837
3R	14623642	3R_14623642_SNP [dm3] 3R_18797920_SNP [dm6]	G	A	1.522e^-4	0.826	INTERGENIC
3L	15581100	3L_15581100_SNP [dm3] 3L_15588000_SNP [dm6]	G	A	1.522e^-4	0.826	UPSTREAM RhoGAP71E & 1 other INTRON CG7656	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	4346178	3R_4346178_SNP [dm3] 3R_8520456_SNP [dm6]	T	C	1.530e^-4	0.826	SYNONYMOUS_CODING CG11737	TF binding site mE1_TFBS_chinmo
X	4091246	X_4091246_SNP [dm3] X_4197213_SNP [dm6]	A	G	1.535e^-4	0.826	INTRON Fas2
2L	5867751	2L_5867751_INS [dm3] 2L_5867751_INS [dm6]	C	CC	1.541e^-4	0.826	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13137037	X_13137037_SNP [dm3] X_13243004_SNP [dm6]	C	T	1.547e^-4	0.826	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	24132555	3R_24132555_SNP [dm3] 3R_28306833_SNP [dm6]	A	G	1.554e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	4147795	2L_4147795_SNP [dm3] 2L_4147795_SNP [dm6]	G	C	1.558e^-4	0.826	INTERGENIC
2R	8134408	2R_8134408_SNP [dm3] 2R_12246903_SNP [dm6]	G	T	1.560e^-4	0.826	EXON CR44315
3L	2645067	3L_2645067_SNP [dm3] 3L_2645067_SNP [dm6]	C	T	1.563e^-4	0.826	UPSTREAM CG1143 INTERGENIC
3L	14370112	3L_14370112_SNP [dm3] 3L_14377012_SNP [dm6]	C	A	1.571e^-4	0.826	INTERGENIC
3L	11922558	3L_11922558_SNP [dm3] 3L_11929458_SNP [dm6]	G	C	1.573e^-4	0.826	INTRON CG44837 & 1 other
2R	16361255	2R_16361255_SNP [dm3] 2R_20473750_SNP [dm6]	C	T	1.575e^-4	0.826	INTRON CG12484
3L	18641715	3L_18641715_SNP [dm3] 3L_18648615_SNP [dm6]	G	T	1.581e^-4	0.826	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_twi
3R	24132562	3R_24132562_SNP [dm3] 3R_28306840_SNP [dm6]	A	T	1.584e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	416926	3L_416926_SNP [dm3] 3L_416926_SNP [dm6]	G	A	1.602e^-4	0.826	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8173824	X_8173824_SNP [dm3] X_8279791_SNP [dm6]	T	C	1.609e^-4	0.826	UTR_3_PRIME nAChRalpha3	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
X	20215463	X_20215463_SNP [dm3] X_20344436_SNP [dm6]	A	C	1.611e^-4	0.826	INTERGENIC
3R	5476907	3R_5476907_SNP [dm3] 3R_9651185_SNP [dm6]	T	G	1.612e^-4	0.826	UTR_3_PRIME CG9492 DOWNSTREAM Dh44
3L	7461509	3L_7461509_SNP [dm3] 3L_7468409_SNP [dm6]	G	T	1.614e^-4	0.826	UTR_3_PRIME CG42660 & 2 others
X	8173850	X_8173850_SNP [dm3] X_8279817_SNP [dm6]	A	G	1.637e^-4	0.826	UTR_3_PRIME nAChRalpha3	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
3L	465002	3L_465002_SNP [dm3] 3L_465002_SNP [dm6]	A	G	1.638e^-4	0.826	INTRON klar
2L	19217493	2L_19217493_SNP [dm3] 2L_19217493_SNP [dm6]	T	C	1.640e^-4	0.826	EXON CR44189	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_sens
3L	4737895	3L_4737895_SNP [dm3] 3L_4737895_SNP [dm6]	A	G	1.641e^-4	0.826	INTRON RhoGEF64C
2L	7337340	2L_7337340_SNP [dm3] 2L_7337340_SNP [dm6]	G	T	1.643e^-4	0.826	INTRON Wnt6
X	16051286	X_16051286_SNP [dm3] X_16157253_SNP [dm6]	G	T	1.654e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5090925	3R_5090925_SNP [dm3] 3R_9265203_SNP [dm6]	G	A	1.658e^-4	0.826	UTR_3_PRIME Aats-trp	TF binding site mE1_TFBS_cad
2L	9463855	2L_9463855_SNP [dm3] 2L_9463855_SNP [dm6]	C	T	1.659e^-4	0.826	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_kn
2L	19236590	2L_19236590_SNP [dm3] 2L_19236590_SNP [dm6]	G	A	1.664e^-4	0.826	INTERGENIC
2L	5519040	2L_5519040_SNP [dm3] 2L_5519040_SNP [dm6]	G	C	1.671e^-4	0.826	SYNONYMOUS_CODING CG7382 DOWNSTREAM CG14020	TF binding site BDTNP1_TFBS_hb mE1_TFBS_sens
2L	7100403	2L_7100403_SNP [dm3] 2L_7100403_SNP [dm6]	G	A	1.675e^-4	0.826	SYNONYMOUS_CODING Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	12520926	2R_12520926_SNP [dm3] 2R_16633421_SNP [dm6]	A	C	1.680e^-4	0.826	SYNONYMOUS_CODING Alk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8133682	2R_8133682_SNP [dm3] 2R_12246177_SNP [dm6]	T	A	1.680e^-4	0.826	DOWNSTREAM CR44315 INTERGENIC
X	6652864	X_6652864_SNP [dm3] X_6758831_SNP [dm6]	T	G	1.680e^-4	0.826	UPSTREAM CG14438 INTRON CG14438 EXON CR43496	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_kn mE1_TFBS_sens
3L	4741044	3L_4741044_SNP [dm3] 3L_4741044_SNP [dm6]	C	A	1.684e^-4	0.826	INTRON RhoGEF64C
2R	13772991	2R_13772991_SNP [dm3] 2R_17885486_SNP [dm6]	C	T	1.690e^-4	0.826	INTRON Elk
2R	6128787	2R_6128787_SNP [dm3] 2R_10241282_SNP [dm6]	T	C	1.692e^-4	0.826	INTRON Hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11978141	2R_11978141_DEL [dm3] 2R_16090636_DEL [dm6]	CC	C	1.698e^-4	0.826	INTRON Dg
2R	11812734	2R_11812734_SNP [dm3] 2R_15925229_SNP [dm6]	T	A	1.699e^-4	0.826	INTRON bdg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8137156	2R_8137156_SNP [dm3] 2R_12249651_SNP [dm6]	T	C	1.706e^-4	0.826	INTERGENIC
3R	14624053	3R_14624053_SNP [dm3] 3R_18798331_SNP [dm6]	G	A	1.708e^-4	0.826	DOWNSTREAM CG18208 INTERGENIC
2R	11612855	2R_11612855_SNP [dm3] 2R_15725350_SNP [dm6]	C	G	1.711e^-4	0.826	INTERGENIC
3R	3253101	3R_3253101_INS [dm3] 3R_7427379_INS [dm6]	T	TACGTTAAATTTAAT...	1.718e^-4	0.826	INTERGENIC
2R	8937770	2R_8937770_SNP [dm3] 2R_13050265_SNP [dm6]	A	G	1.721e^-4	0.826	UPSTREAM CG13324 INTERGENIC
3R	9549091	3R_9549091_SNP [dm3] 3R_13723369_SNP [dm6]	T	A	1.726e^-4	0.826	INTRON CG34383
3R	21341350	3R_21341350_SNP [dm3] 3R_25515628_SNP [dm6]	G	T	1.733e^-4	0.826	UPSTREAM msi INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	18641597	3L_18641597_DEL [dm3] 3L_18648497_DEL [dm6]	AACACA	GGGTT	1.747e^-4	0.826	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24824071	3R_24824071_SNP [dm3] 3R_28998349_SNP [dm6]	G	A	1.747e^-4	0.826	INTRON wat
X	20554770	X_20554770_SNP [dm3] X_20683743_SNP [dm6]	C	G	1.750e^-4	0.826	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
X	13349989	X_13349989_SNP [dm3] X_13455956_SNP [dm6]	C	A	1.752e^-4	0.826	DOWNSTREAM CG34324 INTRON Neto
2R	13505799	2R_13505799_SNP [dm3] 2R_17618294_SNP [dm6]	C	A	1.754e^-4	0.826	UPSTREAM CG44403 INTRON CG10936
2L	13936353	2L_13936353_DEL [dm3] 2L_13936353_DEL [dm6]	TTGTGGAC	T	1.754e^-4	0.826	INTRON Ance-3	TF binding site mE1_TFBS_HSA
3L	14816170	3L_14816170_SNP [dm3] 3L_14823070_SNP [dm6]	A	T	1.757e^-4	0.826	INTRON CG17839
2R	16943100	2R_16943100_SNP [dm3] 2R_21055595_SNP [dm6]	G	A	1.764e^-4	0.826	INTRON shg	TF binding site BDTNP1_TFBS_dl
X	2311636	X_2311636_SNP [dm3] X_2417603_SNP [dm6]	A	T	1.768e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_sens
3L	4838128	3L_4838128_SNP [dm3] 3L_4838128_SNP [dm6]	C	T	1.771e^-4	0.826	NON_SYNONYMOUS_CODING CG13707
2R	12543069	2R_12543069_SNP [dm3] 2R_16655564_SNP [dm6]	T	G	1.775e^-4	0.826	UTR_3_PRIME Picot UPSTREAM Nach	TF binding site mE1_TFBS_cad
3L	2644981	3L_2644981_SNP [dm3] 3L_2644981_SNP [dm6]	A	T	1.777e^-4	0.826	UPSTREAM CG1143 INTERGENIC
2R	18278806	2R_18278806_SNP [dm3] 2R_22391301_SNP [dm6]	A	G	1.780e^-4	0.826	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13137038	X_13137038_SNP [dm3] X_13243005_SNP [dm6]	A	G	1.781e^-4	0.826	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	2645081	3L_2645081_SNP [dm3] 3L_2645081_SNP [dm6]	A	G	1.781e^-4	0.826	UPSTREAM CG1143 INTERGENIC
2R	3655769	2R_3655769_SNP [dm3] 2R_7768264_SNP [dm6]	A	C	1.787e^-4	0.826	INTRON CG30497 & 1 other
2R	12543038	2R_12543038_SNP [dm3] 2R_16655533_SNP [dm6]	T	C	1.788e^-4	0.826	UTR_3_PRIME Picot UPSTREAM Nach
2R	2935611	2R_2935611_SNP [dm3] 2R_7048106_SNP [dm6]	T	G	1.793e^-4	0.826	NON_SYNONYMOUS_CODING Tsp42El
X	7110481	X_7110481_SNP [dm3] X_7216448_SNP [dm6]	T	C	1.794e^-4	0.826	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_twi
2R	8135117	2R_8135117_SNP [dm3] 2R_12247612_SNP [dm6]	G	A	1.806e^-4	0.826	UPSTREAM CR44315 INTERGENIC
3L	5461675	3L_5461675_SNP [dm3] 3L_5468575_SNP [dm6]	G	C	1.817e^-4	0.826	INTERGENIC
2R	13238252	2R_13238252_SNP [dm3] 2R_17350747_SNP [dm6]	A	C	1.824e^-4	0.826	INTRON mbl
3L	3966395	3L_3966395_SNP [dm3] 3L_3966395_SNP [dm6]	C	T	1.830e^-4	0.826	INTERGENIC
3R	11000278	3R_11000278_SNP [dm3] 3R_15174556_SNP [dm6]	C	G	1.833e^-4	0.826	DOWNSTREAM Mf INTRON Mf & 1 other
3R	10122680	3R_10122680_SNP [dm3] 3R_14296958_SNP [dm6]	T	A	1.834e^-4	0.826	INTRON CG12207
3L	460756	3L_460756_SNP [dm3] 3L_460756_SNP [dm6]	C	T	1.834e^-4	0.826	INTRON klar
2L	9675516	2L_9675516_SNP [dm3] 2L_9675516_SNP [dm6]	T	A	1.835e^-4	0.826	INTERGENIC
3R	21427786	3R_21427786_SNP [dm3] 3R_25602064_SNP [dm6]	T	A	1.836e^-4	0.826	UTR_3_PRIME msi DOWNSTREAM msi INTRON ymp
3L	7156753	3L_7156753_SNP [dm3] 3L_7163653_SNP [dm6]	G	A	1.840e^-4	0.826	INTRON Dscam2
3L	7156769	3L_7156769_SNP [dm3] 3L_7163669_SNP [dm6]	G	A	1.840e^-4	0.826	INTRON Dscam2
3L	412583	3L_412583_SNP [dm3] 3L_412583_SNP [dm6]	G	T	1.840e^-4	0.826	INTERGENIC
2R	9943462	2R_9943462_SNP [dm3] 2R_14055957_SNP [dm6]	A	G	1.850e^-4	0.826	SYNONYMOUS_CODING mam INTRON mam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10998641	2R_10998641_SNP [dm3] 2R_15111136_SNP [dm6]	A	C	1.865e^-4	0.826	INTERGENIC
2R	17894975	2R_17894975_SNP [dm3] 2R_22007470_SNP [dm6]	C	A	1.874e^-4	0.826	INTRON CG34370
3L	20888236	3L_20888236_SNP [dm3] 3L_20895136_SNP [dm6]	A	G	1.884e^-4	0.826	INTERGENIC
2R	12534740	2R_12534740_SNP [dm3] 2R_16647235_SNP [dm6]	A	C	1.886e^-4	0.826	NON_SYNONYMOUS_CODING gprs UTR_3_PRIME gprs INTRON gprs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13506100	2R_13506100_SNP [dm3] 2R_17618595_SNP [dm6]	T	G	1.886e^-4	0.826	UPSTREAM CG44403 INTRON CG10936
3L	21555445	3L_21555445_SNP [dm3] 3L_21562345_SNP [dm6]	A	T	1.890e^-4	0.826	UPSTREAM CapaR INTERGENIC
2L	19804784	2L_19804784_SNP [dm3] 2L_19804784_SNP [dm6]	A	C	1.893e^-4	0.826	INTRON sick
2L	4429123	2L_4429123_SNP [dm3] 2L_4429123_SNP [dm6]	G	A	1.893e^-4	0.826	INTRON CG15431
2R	8137206	2R_8137206_SNP [dm3] 2R_12249701_SNP [dm6]	T	C	1.900e^-4	0.826	INTERGENIC
2L	7337324	2L_7337324_SNP [dm3] 2L_7337324_SNP [dm6]	C	T	1.904e^-4	0.826	INTRON Wnt6
3L	1243265	3L_1243265_SNP [dm3] 3L_1243265_SNP [dm6]	C	T	1.904e^-4	0.826	SYNONYMOUS_CODING Klp61F
3L	7949869	3L_7949869_SNP [dm3] 3L_7956769_SNP [dm6]	A	C	1.906e^-4	0.826	INTERGENIC
3L	9252258	3L_9252258_SNP [dm3] 3L_9259158_SNP [dm6]	A	T	1.907e^-4	0.826	INTRON GluRIB	TF binding site mE1_TFBS_HSA
2L	12411766	2L_12411766_SNP [dm3] 2L_12411766_SNP [dm6]	T	C	1.921e^-4	0.826	INTRON vir-1
2R	8144116	2R_8144116_SNP [dm3] 2R_12256611_SNP [dm6]	T	C	1.928e^-4	0.826	UPSTREAM Vha36-2 DOWNSTREAM CG13168 INTERGENIC
3L	4840793	3L_4840793_SNP [dm3] 3L_4840793_SNP [dm6]	T	G	1.937e^-4	0.826	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	8137710	2R_8137710_SNP [dm3] 2R_12250205_SNP [dm6]	C	A	1.942e^-4	0.826	INTERGENIC
2R	6313909	2R_6313909_INS [dm3] 2R_10426404_INS [dm6]	A	AAA	1.952e^-4	0.826	DOWNSTREAM Prx2540-1 & 1 other INTERGENIC	transposable element FlyBase
2L	2038555	2L_2038555_SNP [dm3] 2L_2038555_SNP [dm6]	G	T	1.961e^-4	0.826	START_GAINED Su_dx_ UTR_5_PRIME Su_dx_ INTRON Su_dx_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	4873189	3R_4873189_SNP [dm3] 3R_9047467_SNP [dm6]	A	T	1.965e^-4	0.826	UTR_5_PRIME Rel UPSTREAM Rel INTRON Nmdmc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	17038811	3R_17038811_SNP [dm3] 3R_21213089_SNP [dm6]	A	G	1.970e^-4	0.826	UTR_3_PRIME SNF4Agamma DOWNSTREAM SNF4Agamma
2R	11573868	2R_11573868_SNP [dm3] 2R_15686363_SNP [dm6]	C	T	1.982e^-4	0.826	SYNONYMOUS_CODING Ranbp11 UPSTREAM CG30082	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2L	3401943	2L_3401943_SNP [dm3] 2L_3401943_SNP [dm6]	T	C	1.982e^-4	0.826	INTERGENIC
2L	3401964	2L_3401964_SNP [dm3] 2L_3401964_SNP [dm6]	A	G	1.997e^-4	0.826	INTERGENIC
2R	20314362	2R_20314362_SNP [dm3] 2R_24426839_SNP [dm6]	T	C	2.003e^-4	0.826	INTRON prom
2R	3665694	2R_3665694_SNP [dm3] 2R_7778189_SNP [dm6]	A	G	2.003e^-4	0.826	INTRON CG30497 & 1 other
2L	12445302	2L_12445302_SNP [dm3] 2L_12445302_SNP [dm6]	G	C	2.004e^-4	0.826	DOWNSTREAM CG5421 INTRON Oatp33Ea	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9265089	2R_9265089_SNP [dm3] 2R_13377584_SNP [dm6]	A	G	2.007e^-4	0.826	SYNONYMOUS_CODING CG10814	TF binding site mE1_TFBS_chinmo
X	4094020	X_4094020_SNP [dm3] X_4199987_SNP [dm6]	T	C	2.008e^-4	0.826	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	19804790	2L_19804790_SNP [dm3] 2L_19804790_SNP [dm6]	C	G	2.015e^-4	0.826	INTRON sick
3R	13189782	3R_13189782_SNP [dm3] 3R_17364060_SNP [dm6]	C	A	2.017e^-4	0.826	INTRON beat-IIa
2R	16478238	2R_16478238_SNP [dm3] 2R_20590733_SNP [dm6]	G	A	2.027e^-4	0.826	INTRON bl
2R	16478256	2R_16478256_SNP [dm3] 2R_20590751_SNP [dm6]	T	G	2.027e^-4	0.826	INTRON bl
3R	24362223	3R_24362223_SNP [dm3] 3R_28536501_SNP [dm6]	C	T	2.031e^-4	0.826	INTRON Ppn
2L	20052716	2L_20052716_SNP [dm3] 2L_20052716_SNP [dm6]	C	A	2.036e^-4	0.826	INTRON sNPF
3L	14817116	3L_14817116_SNP [dm3] 3L_14824016_SNP [dm6]	A	T	2.047e^-4	0.826	INTRON CG17839
2R	5698142	2R_5698142_SNP [dm3] 2R_9810637_SNP [dm6]	G	A	2.049e^-4	0.826	DOWNSTREAM CG1648 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	17038829	3R_17038829_SNP [dm3] 3R_21213107_SNP [dm6]	A	T	2.050e^-4	0.826	UTR_3_PRIME SNF4Agamma DOWNSTREAM SNF4Agamma
X	20272155	X_20272155_SNP [dm3] X_20401128_SNP [dm6]	T	G	2.057e^-4	0.826	SYNONYMOUS_CODING HERC2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17894354	2R_17894354_SNP [dm3] 2R_22006849_SNP [dm6]	A	G	2.067e^-4	0.826	INTRON CG34370
3L	412160	3L_412160_INS [dm3] 3L_412160_INS [dm6]	A	AAATACACATA...	2.068e^-4	0.826	INTERGENIC
3L	1740510	3L_1740510_SNP [dm3] 3L_1740510_SNP [dm6]	C	A	2.074e^-4	0.826	INTRON Gk
2R	13242903	2R_13242903_SNP [dm3] 2R_17355398_SNP [dm6]	G	A	2.075e^-4	0.826	INTRON mbl
2R	10998606	2R_10998606_SNP [dm3] 2R_15111101_SNP [dm6]	A	C	2.080e^-4	0.826	INTERGENIC
X	16098245	X_16098245_SNP [dm3] X_16204212_SNP [dm6]	G	C	2.084e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	12507935	3L_12507935_SNP [dm3] 3L_12514835_SNP [dm6]	T	C	2.094e^-4	0.826	UPSTREAM tral & 1 other EXON CR45168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
2L	15084737	2L_15084737_SNP [dm3] 2L_15084737_SNP [dm6]	G	C	2.096e^-4	0.826	INTRON CG15270
2L	3401983	2L_3401983_SNP [dm3] 2L_3401983_SNP [dm6]	T	A	2.112e^-4	0.826	INTERGENIC
2R	11812372	2R_11812372_SNP [dm3] 2R_15924867_SNP [dm6]	A	C	2.116e^-4	0.826	SPLICE_SITE_REGION bdg INTRON bdg	TF binding site mE1_TFBS_cad
X	5605944	X_5605944_SNP [dm3] X_5711911_SNP [dm6]	A	C	2.123e^-4	0.826	INTRON CG33080
3R	9922268	3R_9922268_SNP [dm3] 3R_14096546_SNP [dm6]	C	A	2.126e^-4	0.826	DOWNSTREAM CG9920 INTRON CCHa1
3R	19952735	3R_19952735_SNP [dm3] 3R_24127013_SNP [dm6]	T	A	2.126e^-4	0.826	NON_SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad
2R	11612883	2R_11612883_SNP [dm3] 2R_15725378_SNP [dm6]	C	T	2.127e^-4	0.826	INTERGENIC
2R	10544277	2R_10544277_SNP [dm3] 2R_14656772_SNP [dm6]	C	T	2.133e^-4	0.826	DOWNSTREAM Adgf-E INTERGENIC
2R	13523349	2R_13523349_SNP [dm3] 2R_17635844_SNP [dm6]	G	C	2.137e^-4	0.826	INTRON CG10936
2L	4147959	2L_4147959_SNP [dm3] 2L_4147959_SNP [dm6]	C	A	2.143e^-4	0.826	INTERGENIC
2R	6262640	2R_6262640_INS [dm3] 2R_10375135_INS [dm6]	C	CCC	2.143e^-4	0.826	INTRON CG42732
2R	8137678	2R_8137678_SNP [dm3] 2R_12250173_SNP [dm6]	T	C	2.143e^-4	0.826	INTERGENIC
2L	5717452	2L_5717452_SNP [dm3] 2L_5717452_SNP [dm6]	G	T	2.145e^-4	0.826	UPSTREAM CG14007 DOWNSTREAM CG11149 INTRON CG34011
3L	18816777	3L_18816777_SNP [dm3] 3L_18823677_SNP [dm6]	T	G	2.145e^-4	0.826	INTRON Cat	TF binding site BDTNP1_TFBS_dl
3R	13176142	3R_13176142_DEL [dm3] 3R_17350420_DEL [dm6]	CT	C	2.149e^-4	0.826	INTRON beat-IIa	TF binding site mE1_TFBS_inv
2R	16478242	2R_16478242_SNP [dm3] 2R_20590737_SNP [dm6]	T	A	2.150e^-4	0.826	INTRON bl
3R	6048313	3R_6048313_SNP [dm3] 3R_10222591_SNP [dm6]	C	T	2.167e^-4	0.826	UPSTREAM CG12420 DOWNSTREAM CG12817 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18359255	3L_18359255_SNP [dm3] 3L_18366155_SNP [dm6]	A	C	2.169e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_cad
2L	2520865	2L_2520865_SNP [dm3] 2L_2520865_SNP [dm6]	G	C	2.173e^-4	0.826	INTERGENIC
2L	12527657	2L_12527657_SNP [dm3] 2L_12527657_SNP [dm6]	T	A	2.178e^-4	0.826	INTRON bun	TF binding site BDTNP1_TFBS_dl
2R	20691135	2R_20691135_DEL [dm3] 2R_24803612_DEL [dm6]	CC	C	2.182e^-4	0.826	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	13913861	3R_13913861_SNP [dm3] 3R_18088139_SNP [dm6]	G	A	2.187e^-4	0.826	INTERGENIC
3R	13106773	3R_13106773_SNP [dm3] 3R_17281051_SNP [dm6]	T	C	2.198e^-4	0.826	INTERGENIC
3L	396393	3L_396393_SNP [dm3] 3L_396393_SNP [dm6]	T	C	2.200e^-4	0.826	INTERGENIC
3L	14582224	3L_14582224_SNP [dm3] 3L_14589124_SNP [dm6]	C	T	2.200e^-4	0.826	INTRON HGTX
3L	10689894	3L_10689894_SNP [dm3] 3L_10696794_SNP [dm6]	T	G	2.204e^-4	0.826	UTR_5_PRIME NijA
3R	22765416	3R_22765416_SNP [dm3] 3R_26939694_SNP [dm6]	A	G	2.209e^-4	0.826	INTRON sda
2L	3558905	2L_3558905_SNP [dm3] 2L_3558905_SNP [dm6]	C	A	2.212e^-4	0.826	INTERGENIC
3L	9693521	3L_9693521_SNP [dm3] 3L_9700421_SNP [dm6]	G	A	2.218e^-4	0.826	UTR_3_PRIME UbcD4 DOWNSTREAM CG6761 & 1 other
2L	13196951	2L_13196951_SNP [dm3] 2L_13196951_SNP [dm6]	A	C	2.224e^-4	0.826	UTR_3_PRIME Edem2 DOWNSTREAM CG16972
2L	8507616	2L_8507616_SNP [dm3] 2L_8507616_SNP [dm6]	G	A	2.225e^-4	0.826	UPSTREAM Dh31 INTERGENIC
3R	13215096	3R_13215096_SNP [dm3] 3R_17389374_SNP [dm6]	C	T	2.230e^-4	0.826	UTR_3_PRIME lute INTRON Brf
3L	2989358	3L_2989358_INS [dm3] 3L_2989358_INS [dm6]	A	ATACA	2.240e^-4	0.826	INTERGENIC
3R	21900446	3R_21900446_SNP [dm3] 3R_26074724_SNP [dm6]	G	T	2.246e^-4	0.826	INTERGENIC
2R	8133288	2R_8133288_SNP [dm3] 2R_12245783_SNP [dm6]	C	G	2.248e^-4	0.826	DOWNSTREAM CR44315 INTERGENIC
X	3381344	X_3381344_SNP [dm3] X_3487311_SNP [dm6]	T	C	2.250e^-4	0.826	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_sens
2L	6090249	2L_6090249_INS [dm3] 2L_6090249_INS [dm6]	T	TAAGTATAAATT...	2.251e^-4	0.826	INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3R	25727862	3R_25727862_SNP [dm3] 3R_29902140_SNP [dm6]	G	T	2.261e^-4	0.826	INTRON CG31038
3R	9771775	3R_9771775_SNP [dm3] 3R_13946053_SNP [dm6]	G	C	2.269e^-4	0.826	UPSTREAM Art6 INTERGENIC
3R	13132160	3R_13132160_SNP [dm3] 3R_17306438_SNP [dm6]	G	A	2.272e^-4	0.826	INTERGENIC
2R	12543060	2R_12543060_SNP [dm3] 2R_16655555_SNP [dm6]	A	T	2.273e^-4	0.826	UTR_3_PRIME Picot UPSTREAM Nach
2R	11822568	2R_11822568_SNP [dm3] 2R_15935063_SNP [dm6]	G	A	2.274e^-4	0.826	SYNONYMOUS_CODING CG8297 UPSTREAM Iap2 DOWNSTREAM Mlf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	20561606	X_20561606_SNP [dm3] X_20690579_SNP [dm6]	C	T	2.284e^-4	0.826	UPSTREAM run EXON CR45610	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	4379433	3L_4379433_SNP [dm3] 3L_4379433_SNP [dm6]	G	C	2.302e^-4	0.826	UTR_5_PRIME DopEcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	11901071	3L_11901071_SNP [dm3] 3L_11907971_SNP [dm6]	T	A	2.304e^-4	0.826	INTRON CG44837
2R	7077928	2R_7077928_SNP [dm3] 2R_11190423_SNP [dm6]	C	T	2.312e^-4	0.826	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	11320928	X_11320928_MNP [dm3] X_11426895_MNP [dm6]	GCGG	TTTT	2.313e^-4	0.826	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11320932	X_11320932_INS [dm3] X_11426899_INS [dm6]	A	AAT	2.313e^-4	0.826	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15154191	3R_15154191_SNP [dm3] 3R_19328469_SNP [dm6]	T	A	2.319e^-4	0.826	UPSTREAM CR44175 INTERGENIC
X	20215704	X_20215704_SNP [dm3] X_20344677_SNP [dm6]	G	A	2.334e^-4	0.826	INTERGENIC
2R	8118649	2R_8118649_SNP [dm3] 2R_12231144_SNP [dm6]	G	A	2.341e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	17406438	X_17406438_SNP [dm3] X_17512405_SNP [dm6]	G	C	2.344e^-4	0.826	INTRON CG43658	TF binding site BDTNP1_TFBS_z
X	18378560	X_18378560_SNP [dm3] X_18484527_SNP [dm6]	C	G	2.346e^-4	0.826	UTR_3_PRIME psh UPSTREAM Hayan
2L	7010936	2L_7010936_SNP [dm3] 2L_7010936_SNP [dm6]	T	C	2.349e^-4	0.826	UPSTREAM uif INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	21900442	3R_21900442_SNP [dm3] 3R_26074720_SNP [dm6]	A	G	2.354e^-4	0.826	INTERGENIC
3L	1604475	3L_1604475_SNP [dm3] 3L_1604475_SNP [dm6]	C	T	2.355e^-4	0.826	NON_SYNONYMOUS_CODING CG18170 UTR_5_PRIME CG33791 UPSTREAM CG33791
X	21906383	X_21906383_SNP [dm3] X_22504547_SNP [dm6]	C	T	2.360e^-4	0.826	DOWNSTREAM l_1_G0196 INTRON l_1_G0196
2L	19079207	2L_19079207_SNP [dm3] 2L_19079207_SNP [dm6]	G	T	2.361e^-4	0.826	UPSTREAM CG10700 DOWNSTREAM Lim3 INTERGENIC
2L	10471736	2L_10471736_SNP [dm3] 2L_10471736_SNP [dm6]	G	A	2.363e^-4	0.826	SYNONYMOUS_CODING RluA-1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14291727	3R_14291727_SNP [dm3] 3R_18466005_SNP [dm6]	T	A	2.368e^-4	0.826	INTRON fru
3R	4332775	3R_4332775_SNP [dm3] 3R_8507053_SNP [dm6]	A	T	2.368e^-4	0.826	INTERGENIC
2L	16239759	2L_16239759_SNP [dm3] 2L_16239759_SNP [dm6]	T	C	2.377e^-4	0.826	INTRON CG42817
3L	4759743	3L_4759743_SNP [dm3] 3L_4759743_SNP [dm6]	C	T	2.380e^-4	0.826	INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11727955	X_11727955_SNP [dm3] X_11833922_SNP [dm6]	A	G	2.381e^-4	0.826	UTR_3_PRIME rudhira DOWNSTREAM rudhira INTRON rudhira
3L	14813879	3L_14813879_SNP [dm3] 3L_14820779_SNP [dm6]	A	T	2.382e^-4	0.826	INTRON CG17839
2R	20042883	2R_20042883_SNP [dm3] 2R_24155360_SNP [dm6]	A	G	2.382e^-4	0.826	INTRON Dat
2R	18517227	2R_18517227_INS [dm3] 2R_22629722_INS [dm6]	C	CC	2.388e^-4	0.826	INTRON CG33143	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	12507755	3L_12507755_SNP [dm3] 3L_12514655_SNP [dm6]	T	G	2.389e^-4	0.826	NON_SYNONYMOUS_CODING sti UPSTREAM tral EXON CR45168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	20215221	X_20215221_SNP [dm3] X_20344194_SNP [dm6]	T	C	2.389e^-4	0.826	INTERGENIC	transposable element FlyBase
2R	10955671	2R_10955671_SNP [dm3] 2R_15068166_SNP [dm6]	G	T	2.392e^-4	0.826	INTERGENIC
3L	14817336	3L_14817336_SNP [dm3] 3L_14824236_SNP [dm6]	G	A	2.394e^-4	0.826	INTRON CG17839
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	2.397e^-4	0.826	EXON CR44950
3L	711790	3L_711790_SNP [dm3] 3L_711790_SNP [dm6]	A	T	2.405e^-4	0.826	UTR_5_PRIME CG13896	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	18641613	3L_18641613_SNP [dm3] 3L_18648513_SNP [dm6]	A	T	2.407e^-4	0.826	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24132729	3R_24132729_SNP [dm3] 3R_28307007_SNP [dm6]	T	A	2.412e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	9661315	3L_9661315_SNP [dm3] 3L_9668215_SNP [dm6]	A	G	2.418e^-4	0.826	INTRON fry	TF binding site mE1_TFBS_cad
3R	15340748	3R_15340748_SNP [dm3] 3R_19515026_SNP [dm6]	A	G	2.422e^-4	0.826	INTRON Dys
2R	9147422	2R_9147422_SNP [dm3] 2R_13259917_SNP [dm6]	A	T	2.424e^-4	0.826	UPSTREAM CG42319 INTERGENIC
X	1937110	X_1937110_SNP [dm3] X_2043077_SNP [dm6]	C	T	2.429e^-4	0.826	SYNONYMOUS_CODING CG4325 UPSTREAM Actn & 1 other INTRON CG4313	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	391931	3L_391931_INS [dm3] 3L_391931_INS [dm6]	A	ATTGGATAATTG...	2.432e^-4	0.826	DOWNSTREAM CR45378 INTRON trh
3L	11901079	3L_11901079_SNP [dm3] 3L_11907979_SNP [dm6]	G	A	2.433e^-4	0.826	INTRON CG44837
2R	2954632	2R_2954632_SNP [dm3] 2R_7067127_SNP [dm6]	T	A	2.433e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_cad
2R	16361696	2R_16361696_SNP [dm3] 2R_20474191_SNP [dm6]	G	A	2.434e^-4	0.826	INTRON CG12484
3L	16952764	3L_16952764_DEL [dm3] 3L_16959664_DEL [dm6]	TGACATGACAATAAAT...	T	2.435e^-4	0.826	INTRON Nc73EF
3R	14854201	3R_14854201_SNP [dm3] 3R_19028479_SNP [dm6]	C	T	2.447e^-4	0.826	NON_SYNONYMOUS_CODING gatA UPSTREAM P5cr DOWNSTREAM NP15.6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20215638	X_20215638_SNP [dm3] X_20344611_SNP [dm6]	G	A	2.449e^-4	0.826	INTERGENIC
X	16592976	X_16592976_SNP [dm3] X_16698943_SNP [dm6]	G	A	2.454e^-4	0.826	DOWNSTREAM CG9676 INTRON CG4678
2L	13948455	2L_13948455_SNP [dm3] 2L_13948455_SNP [dm6]	G	A	2.471e^-4	0.826	UPSTREAM CG16884 INTRON Ance-3
2R	14345841	2R_14345841_SNP [dm3] 2R_18458336_SNP [dm6]	T	C	2.472e^-4	0.826	UTR_3_PRIME CG30116 INTRON CG30116
2R	19522673	2R_19522673_SNP [dm3] 2R_23635150_SNP [dm6]	G	T	2.473e^-4	0.826	INTRON retn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4912812	2L_4912812_SNP [dm3] 2L_4912812_SNP [dm6]	C	G	2.474e^-4	0.826	INTRON hoe1
2L	378373	2L_378373_SNP [dm3] 2L_378373_SNP [dm6]	A	T	2.480e^-4	0.826	UTR_5_PRIME al	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	2922161	2L_2922161_SNP [dm3] 2L_2922161_SNP [dm6]	T	A	2.488e^-4	0.826	INTRON lilli
3L	9252312	3L_9252312_SNP [dm3] 3L_9259212_SNP [dm6]	T	C	2.490e^-4	0.826	INTRON GluRIB	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12287328	3L_12287328_SNP [dm3] 3L_12294228_SNP [dm6]	A	T	2.494e^-4	0.826	INTRON CG4328
2L	16239654	2L_16239654_SNP [dm3] 2L_16239654_SNP [dm6]	T	C	2.496e^-4	0.826	INTRON CG42817
3L	1452348	3L_1452348_SNP [dm3] 3L_1452348_SNP [dm6]	A	G	2.497e^-4	0.826	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2645600	3L_2645600_SNP [dm3] 3L_2645600_SNP [dm6]	A	T	2.502e^-4	0.826	INTRON CG1143	TF binding site mE1_TFBS_cad
3L	712399	3L_712399_SNP [dm3] 3L_712399_SNP [dm6]	A	T	2.504e^-4	0.826	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	4950454	2R_4950454_SNP [dm3] 2R_9062949_SNP [dm6]	G	A	2.506e^-4	0.826	INTRON ana	regulatory region REDfly_CRMs
2R	14620448	2R_14620448_SNP [dm3] 2R_18732943_SNP [dm6]	T	A	2.514e^-4	0.826	INTRON Hs3st-A
3R	9771782	3R_9771782_SNP [dm3] 3R_13946060_SNP [dm6]	A	G	2.520e^-4	0.826	UPSTREAM Art6 INTERGENIC
3L	14431695	3L_14431695_SNP [dm3] 3L_14438595_SNP [dm6]	A	G	2.521e^-4	0.826	INTRON bbg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_inv
3L	14845439	3L_14845439_DEL [dm3] 3L_14852339_DEL [dm6]	TCCGCATT	T	2.539e^-4	0.826	INTRON CG17839
3L	5969334	3L_5969334_SNP [dm3] 3L_5976234_SNP [dm6]	G	A	2.545e^-4	0.826	UPSTREAM CG10479 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8547701	3L_8547701_SNP [dm3] 3L_8554601_SNP [dm6]	A	G	2.545e^-4	0.826	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8547718	3L_8547718_SNP [dm3] 3L_8554618_SNP [dm6]	C	A	2.545e^-4	0.826	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1789105	2L_1789105_SNP [dm3] 2L_1789105_SNP [dm6]	C	A	2.548e^-4	0.826	DOWNSTREAM Gr22d INTERGENIC
2L	10488261	2L_10488261_SNP [dm3] 2L_10488261_SNP [dm6]	A	C	2.549e^-4	0.826	SYNONYMOUS_CODING CG7456 UPSTREAM CG6144
2L	18910570	2L_18910570_SNP [dm3] 2L_18910570_SNP [dm6]	C	T	2.549e^-4	0.826	INTERGENIC
2L	12415207	2L_12415207_SNP [dm3] 2L_12415207_SNP [dm6]	A	G	2.552e^-4	0.826	INTRON vir-1
2R	13505969	2R_13505969_SNP [dm3] 2R_17618464_SNP [dm6]	T	G	2.554e^-4	0.826	UPSTREAM CG44403 INTRON CG10936
2R	9147155	2R_9147155_SNP [dm3] 2R_13259650_SNP [dm6]	A	T	2.558e^-4	0.826	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
X	16129663	X_16129663_SNP [dm3] X_16235630_SNP [dm6]	G	A	2.563e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	5705590	3L_5705590_SNP [dm3] 3L_5712490_SNP [dm6]	A	G	2.564e^-4	0.826	UPSTREAM CG44521 INTRON sif	TF binding site mE1_TFBS_chinmo
X	20153346	X_20153346_SNP [dm3] X_20282319_SNP [dm6]	A	G	2.569e^-4	0.826	INTERGENIC
2R	18756327	2R_18756327_SNP [dm3] 2R_22868804_SNP [dm6]	A	G	2.569e^-4	0.826	SYNONYMOUS_CODING fd59A	TF binding site BDTNP1_TFBS_dl
X	8405227	X_8405227_SNP [dm3] X_8511194_SNP [dm6]	C	G	2.570e^-4	0.826	UTR_5_PRIME CG33181 INTRON CG33181	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	4956302	2R_4956302_SNP [dm3] 2R_9068797_SNP [dm6]	C	T	2.571e^-4	0.826	UPSTREAM ana INTRON ana
2R	12828595	2R_12828595_SNP [dm3] 2R_16941090_SNP [dm6]	T	G	2.576e^-4	0.826	INTRON Pkc53E
3R	14854262	3R_14854262_SNP [dm3] 3R_19028540_SNP [dm6]	C	A	2.580e^-4	0.826	NON_SYNONYMOUS_CODING gatA UPSTREAM P5cr DOWNSTREAM NP15.6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13242737	2R_13242737_SNP [dm3] 2R_17355232_SNP [dm6]	C	T	2.588e^-4	0.826	INTRON mbl
X	5080122	X_5080122_SNP [dm3] X_5186089_SNP [dm6]	A	C	2.595e^-4	0.826	INTRON rg & 1 other
X	20215439	X_20215439_SNP [dm3] X_20344412_SNP [dm6]	A	G	2.596e^-4	0.826	INTERGENIC
3L	6054646	3L_6054646_SNP [dm3] 3L_6061546_SNP [dm6]	G	A	2.604e^-4	0.826	SYNONYMOUS_CODING CG10472 DOWNSTREAM CG6592
3R	16890386	3R_16890386_SNP [dm3] 3R_21064664_SNP [dm6]	A	G	2.610e^-4	0.826	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2R	11575711	2R_11575711_SNP [dm3] 2R_15688206_SNP [dm6]	G	T	2.614e^-4	0.826	NON_SYNONYMOUS_CODING Cep89 SPLICE_SITE_REGION Cep89 DOWNSTREAM Ranbp11	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19024800	2R_19024800_SNP [dm3] 2R_23137277_SNP [dm6]	G	A	2.616e^-4	0.826	INTERGENIC
3L	17903053	3L_17903053_SNP [dm3] 3L_17909953_SNP [dm6]	C	A	2.621e^-4	0.826	NON_SYNONYMOUS_CODING CG5290 DOWNSTREAM CG14353
3L	12836424	3L_12836424_SNP [dm3] 3L_12843324_SNP [dm6]	T	G	2.624e^-4	0.826	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	10998561	2R_10998561_INS [dm3] 2R_15111056_INS [dm6]	T	TCTATC	2.627e^-4	0.826	INTERGENIC
3L	62694	3L_62694_SNP [dm3] 3L_62694_SNP [dm6]	C	G	2.628e^-4	0.826	INTERGENIC
2R	12532186	2R_12532186_SNP [dm3] 2R_16644681_SNP [dm6]	G	T	2.630e^-4	0.826	INTRON gprs	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	4759650	3L_4759650_SNP [dm3] 3L_4759650_SNP [dm6]	C	T	2.631e^-4	0.826	DOWNSTREAM CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1786521	2L_1786521_SNP [dm3] 2L_1786521_SNP [dm6]	C	T	2.637e^-4	0.826	INTERGENIC
2L	7122617	2L_7122617_SNP [dm3] 2L_7122617_SNP [dm6]	G	C	2.637e^-4	0.826	INTRON Pvf3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2L	19733007	2L_19733007_SNP [dm3] 2L_19733007_SNP [dm6]	C	A	2.641e^-4	0.826	SYNONYMOUS_CODING CG10462 DOWNSTREAM Lar
3L	8548292	3L_8548292_SNP [dm3] 3L_8555192_SNP [dm6]	A	G	2.642e^-4	0.826	INTRON rhea	TF binding site BDTNP1_TFBS_twi
2R	8137696	2R_8137696_SNP [dm3] 2R_12250191_SNP [dm6]	A	T	2.648e^-4	0.826	INTERGENIC
2L	13040052	2L_13040052_SNP [dm3] 2L_13040052_SNP [dm6]	G	C	2.656e^-4	0.826	INTRON CG9932
2R	7031461	2R_7031461_SNP [dm3] 2R_11143956_SNP [dm6]	G	A	2.658e^-4	0.826	UPSTREAM CG13229 INTRON CG13229
2L	2048173	2L_2048173_SNP [dm3] 2L_2048173_SNP [dm6]	C	T	2.663e^-4	0.826	DOWNSTREAM Kebab INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9873427	3L_9873427_SNP [dm3] 3L_9880327_SNP [dm6]	A	G	2.668e^-4	0.826	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
2R	8383716	2R_8383716_SNP [dm3] 2R_12496211_SNP [dm6]	C	T	2.670e^-4	0.826	INTRON fdl & 1 other
2R	8383732	2R_8383732_SNP [dm3] 2R_12496227_SNP [dm6]	A	T	2.670e^-4	0.826	INTRON fdl & 1 other
2R	10444399	2R_10444399_SNP [dm3] 2R_14556894_SNP [dm6]	T	G	2.674e^-4	0.826	INTRON ttv
X	11320937	X_11320937_SNP [dm3] X_11426904_SNP [dm6]	G	C	2.693e^-4	0.826	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4324850	2L_4324850_SNP [dm3] 2L_4324850_SNP [dm6]	T	C	2.693e^-4	0.826	UTR_5_PRIME CG16857
3R	4028705	3R_4028705_SNP [dm3] 3R_8202983_SNP [dm6]	G	C	2.695e^-4	0.826	DOWNSTREAM CR43303 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2R	10998575	2R_10998575_SNP [dm3] 2R_15111070_SNP [dm6]	T	G	2.695e^-4	0.826	INTERGENIC
3L	18181219	3L_18181219_SNP [dm3] 3L_18188119_SNP [dm6]	A	T	2.701e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11724772	2R_11724772_SNP [dm3] 2R_15837267_SNP [dm6]	C	T	2.702e^-4	0.826	INTRON tun	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	1788690	2L_1788690_SNP [dm3] 2L_1788690_SNP [dm6]	A	G	2.705e^-4	0.826	DOWNSTREAM Gr22d INTERGENIC
2R	12535240	2R_12535240_SNP [dm3] 2R_16647735_SNP [dm6]	C	T	2.705e^-4	0.826	SYNONYMOUS_CODING gprs UTR_3_PRIME gprs INTRON gprs	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16813356	3L_16813356_SNP [dm3] 3L_16820256_SNP [dm6]	G	A	2.705e^-4	0.826	DOWNSTREAM nudC INTRON CG13024
3R	23339779	3R_23339779_SNP [dm3] 3R_27514057_SNP [dm6]	A	G	2.710e^-4	0.826	INTERGENIC
3L	4843704	3L_4843704_SNP [dm3] 3L_4843704_SNP [dm6]	C	A	2.715e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14828738	3L_14828738_SNP [dm3] 3L_14835638_SNP [dm6]	G	T	2.728e^-4	0.826	INTRON CG17839
2R	11809724	2R_11809724_SNP [dm3] 2R_15922219_SNP [dm6]	A	T	2.728e^-4	0.826	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
2L	13948457	2L_13948457_SNP [dm3] 2L_13948457_SNP [dm6]	A	G	2.732e^-4	0.826	UPSTREAM CG16884 INTRON Ance-3
2L	8558261	2L_8558261_DEL [dm3] 2L_8558261_DEL [dm6]	ACAT	A	2.736e^-4	0.826	INTRON Sema-1a	TF binding site mE1_TFBS_cad
3L	9554651	3L_9554651_SNP [dm3] 3L_9561551_SNP [dm6]	A	C	2.737e^-4	0.826	INTRON CG42673
3L	12287350	3L_12287350_SNP [dm3] 3L_12294250_SNP [dm6]	T	G	2.739e^-4	0.826	INTRON CG4328
2R	17260591	2R_17260591_SNP [dm3] 2R_21373086_SNP [dm6]	C	G	2.746e^-4	0.826	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20433915	3R_20433915_SNP [dm3] 3R_24608193_SNP [dm6]	C	G	2.754e^-4	0.826	INTRON mld
2R	8132763	2R_8132763_SNP [dm3] 2R_12245258_SNP [dm6]	G	C	2.754e^-4	0.826	UPSTREAM CG43244 INTERGENIC
2L	6398352	2L_6398352_SNP [dm3] 2L_6398352_SNP [dm6]	G	T	2.755e^-4	0.826	INTRON CG42368
3R	25570656	3R_25570656_SNP [dm3] 3R_29744934_SNP [dm6]	G	A	2.756e^-4	0.826	SYNONYMOUS_CODING CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16325160	3L_16325160_SNP [dm3] 3L_16332060_SNP [dm6]	G	A	2.759e^-4	0.826	NON_SYNONYMOUS_CODING retinin DOWNSTREAM CG33061 & 1 other	TF binding site mE1_TFBS_cad
2R	10998796	2R_10998796_SNP [dm3] 2R_15111291_SNP [dm6]	G	A	2.761e^-4	0.826	INTERGENIC
2L	5867765	2L_5867765_SNP [dm3] 2L_5867765_SNP [dm6]	C	G	2.763e^-4	0.826	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10998591	2R_10998591_SNP [dm3] 2R_15111086_SNP [dm6]	G	T	2.768e^-4	0.826	INTERGENIC
2R	10998597	2R_10998597_SNP [dm3] 2R_15111092_SNP [dm6]	T	C	2.768e^-4	0.826	INTERGENIC
2R	10998602	2R_10998602_SNP [dm3] 2R_15111097_SNP [dm6]	A	T	2.768e^-4	0.826	INTERGENIC
3L	503834	3L_503834_SNP [dm3] 3L_503834_SNP [dm6]	G	C	2.771e^-4	0.826	INTRON klar
3L	4697491	3L_4697491_SNP [dm3] 3L_4697491_SNP [dm6]	C	T	2.773e^-4	0.826	UPSTREAM CG13713 INTRON RhoGEF64C	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	19469132	2L_19469132_SNP [dm3] 2L_19469132_SNP [dm6]	T	A	2.776e^-4	0.826	DOWNSTREAM CR45723 EXON CR45722
3L	9661317	3L_9661317_SNP [dm3] 3L_9668217_SNP [dm6]	A	G	2.778e^-4	0.826	INTRON fry	TF binding site mE1_TFBS_cad
2R	6128714	2R_6128714_SNP [dm3] 2R_10241209_SNP [dm6]	T	G	2.795e^-4	0.826	INTRON Hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11168356	3L_11168356_INS [dm3] 3L_11175256_INS [dm6]	G	TTATA	2.796e^-4	0.826	INTRON CG14142	TF binding site mE1_TFBS_cad
2L	9675199	2L_9675199_SNP [dm3] 2L_9675199_SNP [dm6]	C	G	2.815e^-4	0.826	INTERGENIC
2R	9147438	2R_9147438_SNP [dm3] 2R_13259933_SNP [dm6]	G	A	2.819e^-4	0.826	UPSTREAM CG42319 INTERGENIC
2L	12078979	2L_12078979_SNP [dm3] 2L_12078979_SNP [dm6]	G	T	2.832e^-4	0.826	UPSTREAM CR44591 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	13948437	2L_13948437_SNP [dm3] 2L_13948437_SNP [dm6]	G	A	2.841e^-4	0.826	UPSTREAM CG16884 INTRON Ance-3
2L	912368	2L_912368_SNP [dm3] 2L_912368_SNP [dm6]	G	A	2.845e^-4	0.826	DOWNSTREAM CR44061 INTERGENIC
3R	23977351	3R_23977351_SNP [dm3] 3R_28151629_SNP [dm6]	A	G	2.845e^-4	0.826	INTRON CG34354
X	12273528	X_12273528_SNP [dm3] X_12379495_SNP [dm6]	C	A	2.847e^-4	0.826	INTERGENIC
2R	6319565	2R_6319565_SNP [dm3] 2R_10432060_SNP [dm6]	C	T	2.850e^-4	0.826	INTRON RanBPM	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	3958642	3R_3958642_SNP [dm3] 3R_8132920_SNP [dm6]	G	T	2.850e^-4	0.826	INTERGENIC
2L	17333190	2L_17333190_SNP [dm3] 2L_17333190_SNP [dm6]	A	T	2.853e^-4	0.826	INTERGENIC
X	15559759	X_15559759_SNP [dm3] X_15665726_SNP [dm6]	A	G	2.853e^-4	0.826	UPSTREAM CR43299 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	20195054	3L_20195054_SNP [dm3] 3L_20201954_SNP [dm6]	T	C	2.856e^-4	0.826	UPSTREAM obst-F DOWNSTREAM CG7298 INTERGENIC
X	20936762	X_20936762_SNP [dm3] X_21065735_SNP [dm6]	G	A	2.857e^-4	0.826	INTRON bves & 1 other
3L	12055410	3L_12055410_SNP [dm3] 3L_12062310_SNP [dm6]	C	T	2.860e^-4	0.826	INTRON rols	TF binding site BDTNP1_TFBS_da
3L	14828782	3L_14828782_SNP [dm3] 3L_14835682_SNP [dm6]	A	C	2.863e^-4	0.826	INTRON CG17839
2L	13152778	2L_13152778_SNP [dm3] 2L_13152778_SNP [dm6]	A	G	2.864e^-4	0.826	INTERGENIC
3R	4045004	3R_4045004_SNP [dm3] 3R_8219282_SNP [dm6]	A	G	2.879e^-4	0.826	NON_SYNONYMOUS_CODING CG7800 UPSTREAM CG18249
2R	16478189	2R_16478189_SNP [dm3] 2R_20590684_SNP [dm6]	T	A	2.884e^-4	0.826	INTRON bl	TF binding site BDTNP1_TFBS_twi
2R	8144149	2R_8144149_SNP [dm3] 2R_12256644_SNP [dm6]	T	A	2.893e^-4	0.826	UPSTREAM Vha36-2 DOWNSTREAM CG13168 INTERGENIC
2L	13626041	2L_13626041_SNP [dm3] 2L_13626041_SNP [dm6]	G	A	2.894e^-4	0.826	INTRON kuz
2R	19894083	2R_19894083_SNP [dm3] 2R_24006560_SNP [dm6]	A	G	2.896e^-4	0.826	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14040065	3R_14040065_SNP [dm3] 3R_18214343_SNP [dm6]	T	C	2.896e^-4	0.826	SYNONYMOUS_CODING CG7985	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	268796	2L_268796_DEL [dm3] 2L_268796_DEL [dm6]	AA	A	2.899e^-4	0.826	UPSTREAM CG3345 INTRON CG3645
3R	14977420	3R_14977420_SNP [dm3] 3R_19151698_SNP [dm6]	C	A	2.913e^-4	0.826	INTRON CG5835
2R	6109703	2R_6109703_SNP [dm3] 2R_10222198_SNP [dm6]	G	T	2.918e^-4	0.826	INTRON Hr46 & 1 other
3L	9555349	3L_9555349_SNP [dm3] 3L_9562249_SNP [dm6]	A	G	2.929e^-4	0.826	INTRON CG42673
2R	10998557	2R_10998557_SNP [dm3] 2R_15111052_SNP [dm6]	A	T	2.931e^-4	0.826	INTERGENIC
2L	9675123	2L_9675123_SNP [dm3] 2L_9675123_SNP [dm6]	A	G	2.933e^-4	0.826	INTERGENIC
3R	4686158	3R_4686158_SNP [dm3] 3R_8860436_SNP [dm6]	A	G	2.935e^-4	0.826	INTRON pyd
3L	4759676	3L_4759676_DEL [dm3] 3L_4759676_DEL [dm6]	CC	C	2.942e^-4	0.826	DOWNSTREAM CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11168354	3L_11168354_SNP [dm3] 3L_11175254_SNP [dm6]	G	A	2.944e^-4	0.826	INTRON CG14142	TF binding site mE1_TFBS_cad
3L	20752645	3L_20752645_SNP [dm3] 3L_20759545_SNP [dm6]	A	G	2.950e^-4	0.826	DOWNSTREAM CG43251 INTERGENIC
3L	21467434	3L_21467434_SNP [dm3] 3L_21474334_SNP [dm6]	G	A	2.960e^-4	0.826	UTR_3_PRIME croc	regulatory region REDfly_CRMs
X	5605958	X_5605958_SNP [dm3] X_5711925_SNP [dm6]	G	A	2.962e^-4	0.826	INTRON CG33080
2R	16052969	2R_16052969_SNP [dm3] 2R_20165464_SNP [dm6]	T	A	2.963e^-4	0.826	INTERGENIC
2L	4169410	2L_4169410_SNP [dm3] 2L_4169410_SNP [dm6]	C	T	2.969e^-4	0.826	INTERGENIC
3L	12114324	3L_12114324_SNP [dm3] 3L_12121224_SNP [dm6]	T	G	2.975e^-4	0.826	DOWNSTREAM yps & 1 other INTERGENIC
2L	4427110	2L_4427110_SNP [dm3] 2L_4427110_SNP [dm6]	A	G	2.978e^-4	0.826	INTRON CG15431
3R	19747119	3R_19747119_SNP [dm3] 3R_23921397_SNP [dm6]	C	G	2.983e^-4	0.826	INTRON sba	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	21531711	3L_21531711_SNP [dm3] 3L_21538611_SNP [dm6]	G	A	2.983e^-4	0.826	DOWNSTREAM CoVIII & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med
3L	21559727	3L_21559727_SNP [dm3] 3L_21566627_SNP [dm6]	T	C	2.983e^-4	0.826	INTRON CG7634	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13242775	2R_13242775_SNP [dm3] 2R_17355270_SNP [dm6]	A	C	2.986e^-4	0.826	INTRON mbl
2L	7121851	2L_7121851_SNP [dm3] 2L_7121851_SNP [dm6]	T	G	2.987e^-4	0.826	INTRON Pvf3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5518881	2L_5518881_SNP [dm3] 2L_5518881_SNP [dm6]	G	A	2.989e^-4	0.826	UTR_3_PRIME CG14020 DOWNSTREAM CG7382	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
2R	14075192	2R_14075192_SNP [dm3] 2R_18187687_SNP [dm6]	A	G	2.993e^-4	0.826	UPSTREAM CG14499 INTRON CG33958
2L	10085830	2L_10085830_DEL [dm3] 2L_10085830_DEL [dm6]	AAA	A	2.995e^-4	0.826	INTRON CG44153
3R	20845209	3R_20845209_SNP [dm3] 3R_25019487_SNP [dm6]	C	G	3.001e^-4	0.826	NON_SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_HSA
3L	21499495	3L_21499495_SNP [dm3] 3L_21506395_SNP [dm6]	A	G	3.004e^-4	0.826	INTRON Glg1	TF binding site mE1_TFBS_chinmo
3L	21502737	3L_21502737_SNP [dm3] 3L_21509637_SNP [dm6]	A	G	3.004e^-4	0.826	UPSTREAM M6 INTRON M6	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	21516847	3L_21516847_SNP [dm3] 3L_21523747_SNP [dm6]	T	C	3.004e^-4	0.826	UTR_5_PRIME CG7611 INTRON CG7611	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2R	14074046	2R_14074046_SNP [dm3] 2R_18186541_SNP [dm6]	T	C	3.008e^-4	0.826	SYNONYMOUS_CODING CG33958
2R	12453917	2R_12453917_SNP [dm3] 2R_16566412_SNP [dm6]	C	T	3.011e^-4	0.826	INTRON CG4945
3L	3096781	3L_3096781_SNP [dm3] 3L_3096781_SNP [dm6]	G	C	3.012e^-4	0.826	UPSTREAM tRNA:CR32286 DOWNSTREAM tRNA:CR32288 & 4 others INTRON Cht7	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	12246900	3L_12246900_SNP [dm3] 3L_12253800_SNP [dm6]	A	G	3.014e^-4	0.826	INTRON app
X	1718697	X_1718697_SNP [dm3] X_1824664_SNP [dm6]	A	T	3.019e^-4	0.826	UPSTREAM CG42666 INTRON CG42666	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	19802428	2L_19802428_SNP [dm3] 2L_19802428_SNP [dm6]	A	G	3.037e^-4	0.826	INTRON sick
3R	8390986	3R_8390986_SNP [dm3] 3R_12565264_SNP [dm6]	C	T	3.045e^-4	0.826	INTRON Octbeta2R
3L	21528112	3L_21528112_SNP [dm3] 3L_21535012_SNP [dm6]	T	C	3.049e^-4	0.826	INTRON ppk5	TF binding site mE1_TFBS_inv
3L	15483419	3L_15483419_SNP [dm3] 3L_15490319_SNP [dm6]	T	A	3.053e^-4	0.826	INTERGENIC
3R	20433862	3R_20433862_SNP [dm3] 3R_24608140_SNP [dm6]	G	A	3.069e^-4	0.826	INTRON mld
3L	2645026	3L_2645026_SNP [dm3] 3L_2645026_SNP [dm6]	T	A	3.070e^-4	0.826	UPSTREAM CG1143 INTERGENIC
3L	22388719	3L_22388719_INS [dm3] 3L_22395619_INS [dm6]	A	AA	3.075e^-4	0.826	INTRON Ten-m	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8137699	2R_8137699_SNP [dm3] 2R_12250194_SNP [dm6]	T	C	3.076e^-4	0.826	INTERGENIC
3L	19467940	3L_19467940_SNP [dm3] 3L_19474840_SNP [dm6]	C	T	3.077e^-4	0.826	DOWNSTREAM CG18294 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2L	1931216	2L_1931216_SNP [dm3] 2L_1931216_SNP [dm6]	T	G	3.085e^-4	0.826	INTRON CG7337
2L	13231337	2L_13231337_SNP [dm3] 2L_13231337_SNP [dm6]	A	G	3.090e^-4	0.826	UPSTREAM Prosalpha6T DOWNSTREAM CG16815 INTERGENIC	TF binding site mE1_TFBS_cad
X	5080133	X_5080133_SNP [dm3] X_5186100_SNP [dm6]	G	A	3.092e^-4	0.826	INTRON rg & 1 other
3L	17892756	3L_17892756_SNP [dm3] 3L_17899656_SNP [dm6]	C	A	3.092e^-4	0.826	NON_SYNONYMOUS_CODING Prestin
2L	12661153	2L_12661153_SNP [dm3] 2L_12661153_SNP [dm6]	C	T	3.095e^-4	0.826	INTRON pdm2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	1915844	X_1915844_SNP [dm3] X_2021811_SNP [dm6]	C	T	3.096e^-4	0.826	SYNONYMOUS_CODING east	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19901820	2L_19901820_SNP [dm3] 2L_19901820_SNP [dm6]	G	T	3.099e^-4	0.826	INTRON sick
2R	6128786	2R_6128786_SNP [dm3] 2R_10241281_SNP [dm6]	C	T	3.100e^-4	0.826	INTRON Hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17783509	2L_17783509_SNP [dm3] 2L_17783509_SNP [dm6]	T	G	3.102e^-4	0.826	INTERGENIC
2L	16013909	2L_16013909_SNP [dm3] 2L_16013909_SNP [dm6]	T	A	3.107e^-4	0.826	INTRON beat-Ic
2R	12543223	2R_12543223_SNP [dm3] 2R_16655718_SNP [dm6]	G	T	3.116e^-4	0.826	UTR_3_PRIME Picot UPSTREAM Nach	TF binding site mE1_TFBS_cad
X	5605963	X_5605963_SNP [dm3] X_5711930_SNP [dm6]	A	T	3.123e^-4	0.826	INTRON CG33080
2L	10110377	2L_10110377_SNP [dm3] 2L_10110377_SNP [dm6]	A	C	3.134e^-4	0.826	INTRON CG44153 & 1 other
2L	1931214	2L_1931214_SNP [dm3] 2L_1931214_SNP [dm6]	T	A	3.135e^-4	0.826	INTRON CG7337
2L	14125368	2L_14125368_SNP [dm3] 2L_14125368_SNP [dm6]	T	C	3.136e^-4	0.826	INTERGENIC
2R	10998554	2R_10998554_INS [dm3] 2R_15111049_INS [dm6]	A	ACCATAAGAACCACTAATGG...	3.136e^-4	0.826	INTERGENIC
3L	21487717	3L_21487717_SNP [dm3] 3L_21494617_SNP [dm6]	T	C	3.138e^-4	0.826	NON_SYNONYMOUS_CODING Hr78 DOWNSTREAM CG7519
2L	17315237	2L_17315237_SNP [dm3] 2L_17315237_SNP [dm6]	A	T	3.140e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	3968508	3R_3968508_SNP [dm3] 3R_8142786_SNP [dm6]	A	T	3.141e^-4	0.826	INTERGENIC
2R	11813558	2R_11813558_SNP [dm3] 2R_15926053_SNP [dm6]	G	C	3.153e^-4	0.826	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	11658175	X_11658175_SNP [dm3] X_11764142_SNP [dm6]	G	A	3.153e^-4	0.826	SYNONYMOUS_CODING CG9360 INTRON m
X	16443965	X_16443965_SNP [dm3] X_16549932_SNP [dm6]	G	A	3.154e^-4	0.826	INTRON Arp2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3665721	2R_3665721_SNP [dm3] 2R_7778216_SNP [dm6]	C	T	3.155e^-4	0.826	INTRON CG30497 & 1 other
2L	8956572	2L_8956572_SNP [dm3] 2L_8956572_SNP [dm6]	A	T	3.155e^-4	0.826	UPSTREAM CG31886 INTRON CG31886	TF binding site BDTNP1_TFBS_twi mE1_TFBS_zfh1
3L	9806536	3L_9806536_SNP [dm3] 3L_9813436_SNP [dm6]	A	T	3.156e^-4	0.826	UPSTREAM CG43897 INTERGENIC
3R	13454335	3R_13454335_SNP [dm3] 3R_17628613_SNP [dm6]	C	G	3.161e^-4	0.826	SYNONYMOUS_CODING CG14325 DOWNSTREAM tRNA:V4:90C
2L	2684096	2L_2684096_SNP [dm3] 2L_2684096_SNP [dm6]	G	T	3.162e^-4	0.826	UTR_5_PRIME CG31690
2L	7121850	2L_7121850_SNP [dm3] 2L_7121850_SNP [dm6]	C	T	3.166e^-4	0.826	INTRON Pvf3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	4369002	3R_4369002_SNP [dm3] 3R_8543280_SNP [dm6]	C	A	3.171e^-4	0.826	INTERGENIC
2L	10609395	2L_10609395_SNP [dm3] 2L_10609395_SNP [dm6]	G	C	3.193e^-4	0.826	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16239646	2L_16239646_SNP [dm3] 2L_16239646_SNP [dm6]	T	C	3.196e^-4	0.826	INTRON CG42817
3R	25759599	3R_25759599_SNP [dm3] 3R_29933877_SNP [dm6]	C	T	3.204e^-4	0.826	NON_SYNONYMOUS_CODING CG42557 START_GAINED CG42558 UTR_5_PRIME CG42558 UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19804284	2L_19804284_SNP [dm3] 2L_19804284_SNP [dm6]	T	C	3.208e^-4	0.826	INTRON sick
X	6736540	X_6736540_SNP [dm3] X_6842507_SNP [dm6]	C	T	3.215e^-4	0.826	INTRON CG14435	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14385310	3L_14385310_INS [dm3] 3L_14392210_INS [dm6]	T	TGCTCTTAA	3.226e^-4	0.826	INTERGENIC
2L	8928568	2L_8928568_SNP [dm3] 2L_8928568_SNP [dm6]	T	G	3.230e^-4	0.826	SYNONYMOUS_CODING CG34398 INTRON CG34398	TF binding site mE1_TFBS_cad
3L	4838166	3L_4838166_SNP [dm3] 3L_4838166_SNP [dm6]	A	T	3.244e^-4	0.826	SYNONYMOUS_CODING CG13707
2L	21912234	2L_21912234_SNP [dm3] 2L_21912234_SNP [dm6]	G	A	3.245e^-4	0.826	INTERGENIC	transposable element FlyBase
3R	19951844	3R_19951844_SNP [dm3] 3R_24126122_SNP [dm6]	T	G	3.253e^-4	0.826	SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19871664	X_19871664_SNP [dm3] X_19977631_SNP [dm6]	C	G	3.271e^-4	0.826	INTERGENIC
2R	19007092	2R_19007092_SNP [dm3] 2R_23119569_SNP [dm6]	G	T	3.273e^-4	0.826	INTERGENIC
X	5605954	X_5605954_SNP [dm3] X_5711921_SNP [dm6]	T	A	3.279e^-4	0.826	INTRON CG33080
2R	8133308	2R_8133308_INS [dm3] 2R_12245803_INS [dm6]	A	AA	3.279e^-4	0.826	DOWNSTREAM CR44315 INTERGENIC
2R	3665693	2R_3665693_SNP [dm3] 2R_7778188_SNP [dm6]	A	T	3.281e^-4	0.826	INTRON CG30497 & 1 other
3R	17455708	3R_17455708_SNP [dm3] 3R_21629986_SNP [dm6]	G	T	3.285e^-4	0.826	INTRON E2f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	9661340	3L_9661340_SNP [dm3] 3L_9668240_SNP [dm6]	C	G	3.285e^-4	0.826	INTRON fry	TF binding site mE1_TFBS_cad
3L	11926980	3L_11926980_SNP [dm3] 3L_11933880_SNP [dm6]	A	C	3.297e^-4	0.826	SYNONYMOUS_CODING byn INTRON CG44837
2L	9504688	2L_9504688_SNP [dm3] 2L_9504688_SNP [dm6]	G	A	3.297e^-4	0.826	SYNONYMOUS_CODING CG33298
2L	18527193	2L_18527193_SNP [dm3] 2L_18527193_SNP [dm6]	C	A	3.298e^-4	0.826	SYNONYMOUS_CODING CG10211	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3096809	3L_3096809_SNP [dm3] 3L_3096809_SNP [dm6]	A	T	3.309e^-4	0.826	UPSTREAM tRNA:CR32286 DOWNSTREAM tRNA:CR32272 & 3 others INTRON Cht7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	3965758	3R_3965758_SNP [dm3] 3R_8140036_SNP [dm6]	T	C	3.310e^-4	0.826	UPSTREAM tRNA:N5:84F & 1 other DOWNSTREAM tRNA:R2:84Fd & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	3.310e^-4	0.826	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
3L	11901055	3L_11901055_SNP [dm3] 3L_11907955_SNP [dm6]	G	T	3.312e^-4	0.826	INTRON CG44837
2L	9463889	2L_9463889_DEL [dm3] 2L_9463889_DEL [dm6]	CA	G	3.320e^-4	0.826	UTR_3_PRIME numb DOWNSTREAM numb
3R	18215091	3R_18215091_SNP [dm3] 3R_22389369_SNP [dm6]	T	C	3.324e^-4	0.826	START_GAINED CG5379 UTR_5_PRIME CG5379 UPSTREAM CG5379 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	13040021	2L_13040021_SNP [dm3] 2L_13040021_SNP [dm6]	A	G	3.331e^-4	0.826	INTRON CG9932
3R	2908443	3R_2908443_SNP [dm3] 3R_7082721_SNP [dm6]	C	T	3.335e^-4	0.826	SYNONYMOUS_CODING Dpck DOWNSTREAM CG1091	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	15103670	X_15103670_SNP [dm3] X_15209637_SNP [dm6]	G	T	3.340e^-4	0.826	UPSTREAM CG5662 INTERGENIC
3L	14658114	3L_14658114_SNP [dm3] 3L_14665014_SNP [dm6]	T	C	3.340e^-4	0.826	SYNONYMOUS_CODING dlp
3R	3966032	3R_3966032_SNP [dm3] 3R_8140310_SNP [dm6]	G	A	3.353e^-4	0.826	UPSTREAM tRNA:N5:84F & 2 others DOWNSTREAM tRNA:R2:84Fc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	3670445	2R_3670445_SNP [dm3] 2R_7782940_SNP [dm6]	A	G	3.357e^-4	0.826	UTR_3_PRIME cn UPSTREAM CR45108 & 2 others	TF binding site BDTNP1_TFBS_dl
2R	13919604	2R_13919604_SNP [dm3] 2R_18032099_SNP [dm6]	A	T	3.366e^-4	0.826	INTERGENIC
X	21440217	X_21440217_SNP [dm3] X_21569190_SNP [dm6]	T	A	3.376e^-4	0.826	INTERGENIC
3L	18181197	3L_18181197_SNP [dm3] 3L_18188097_SNP [dm6]	G	A	3.377e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18181204	3L_18181204_SNP [dm3] 3L_18188104_SNP [dm6]	G	A	3.379e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	5894517	3R_5894517_SNP [dm3] 3R_10068795_SNP [dm6]	C	A	3.383e^-4	0.826	DOWNSTREAM CG33784 INTERGENIC
2R	16623979	2R_16623979_SNP [dm3] 2R_20736474_SNP [dm6]	G	A	3.387e^-4	0.826	INTRON dpr
X	12264143	X_12264143_SNP [dm3] X_12370110_SNP [dm6]	C	A	3.388e^-4	0.826	INTERGENIC
X	15538084	X_15538084_SNP [dm3] X_15644051_SNP [dm6]	A	C	3.401e^-4	0.826	UPSTREAM CG8117 INTERGENIC
2L	19743827	2L_19743827_SNP [dm3] 2L_19743827_SNP [dm6]	G	A	3.402e^-4	0.826	SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17406444	X_17406444_SNP [dm3] X_17512411_SNP [dm6]	G	C	3.403e^-4	0.826	INTRON CG43658	TF binding site BDTNP1_TFBS_z
2L	7010930	2L_7010930_SNP [dm3] 2L_7010930_SNP [dm6]	A	T	3.416e^-4	0.826	UPSTREAM uif INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	6740117	X_6740117_SNP [dm3] X_6846084_SNP [dm6]	C	A	3.417e^-4	0.826	SYNONYMOUS_CODING CG4557	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2644985	3L_2644985_SNP [dm3] 3L_2644985_SNP [dm6]	T	A	3.418e^-4	0.826	UPSTREAM CG1143 INTERGENIC
3L	23720164	3L_23720164_SNP [dm3] 3L_23727064_SNP [dm6]	G	A	3.422e^-4	0.826	SYNONYMOUS_CODING CG40298
2R	19675722	2R_19675722_DEL [dm3] 2R_23788199_DEL [dm6]	GCCCACAGCCGG...	G	3.423e^-4	0.826	INTRON CG9850
2L	8087158	2L_8087158_SNP [dm3] 2L_8087158_SNP [dm6]	G	T	3.450e^-4	0.826	INTRON Bsg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	4331830	3R_4331830_SNP [dm3] 3R_8506108_SNP [dm6]	C	T	3.450e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_cad
2R	10998617	2R_10998617_SNP [dm3] 2R_15111112_SNP [dm6]	C	T	3.454e^-4	0.826	INTERGENIC
2R	19024849	2R_19024849_SNP [dm3] 2R_23137326_SNP [dm6]	T	G	3.456e^-4	0.826	INTERGENIC
3L	454926	3L_454926_SNP [dm3] 3L_454926_SNP [dm6]	C	A	3.477e^-4	0.826	INTRON klar
3L	8838357	3L_8838357_SNP [dm3] 3L_8845257_SNP [dm6]	A	G	3.484e^-4	0.826	INTRON dally
3L	13310290	3L_13310290_SNP [dm3] 3L_13317190_SNP [dm6]	T	G	3.485e^-4	0.826	INTERGENIC
3L	14057292	3L_14057292_SNP [dm3] 3L_14064192_SNP [dm6]	C	T	3.486e^-4	0.826	INTRON CG32138	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	2645611	3L_2645611_SNP [dm3] 3L_2645611_SNP [dm6]	C	A	3.487e^-4	0.826	INTRON CG1143	TF binding site mE1_TFBS_cad
2R	9940463	2R_9940463_SNP [dm3] 2R_14052958_SNP [dm6]	G	C	3.489e^-4	0.826	INTRON mam
3L	12108383	3L_12108383_SNP [dm3] 3L_12115283_SNP [dm6]	A	T	3.498e^-4	0.826	UPSTREAM l_3_j2D3 INTERGENIC
3R	26913996	3R_26913996_SNP [dm3] 3R_31088274_SNP [dm6]	T	C	3.498e^-4	0.826	INTERGENIC
X	20377311	X_20377311_SNP [dm3] X_20506284_SNP [dm6]	C	T	3.503e^-4	0.826	INTRON RhoGAP19D
2R	14075197	2R_14075197_SNP [dm3] 2R_18187692_SNP [dm6]	C	T	3.505e^-4	0.826	UPSTREAM CG14499 INTRON CG33958
2L	11433989	2L_11433989_SNP [dm3] 2L_11433989_SNP [dm6]	C	T	3.505e^-4	0.826	DOWNSTREAM salm INTERGENIC
2R	18286530	2R_18286530_SNP [dm3] 2R_22399025_SNP [dm6]	A	G	3.521e^-4	0.826	INTRON babos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	25091548	3R_25091548_SNP [dm3] 3R_29265826_SNP [dm6]	T	A	3.524e^-4	0.826	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24344751	3R_24344751_SNP [dm3] 3R_28519029_SNP [dm6]	T	G	3.528e^-4	0.826	DOWNSTREAM CG31051 INTRON Dhc98D	TF binding site mE1_TFBS_chinmo
3R	13565054	3R_13565054_SNP [dm3] 3R_17739332_SNP [dm6]	A	G	3.531e^-4	0.826	UPSTREAM TyrRII INTRON TyrRII
2R	17893465	2R_17893465_SNP [dm3] 2R_22005960_SNP [dm6]	C	T	3.532e^-4	0.826	INTRON CG34370
3L	4759639	3L_4759639_SNP [dm3] 3L_4759639_SNP [dm6]	G	A	3.538e^-4	0.826	DOWNSTREAM CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2927601	3R_2927601_SNP [dm3] 3R_7101879_SNP [dm6]	T	C	3.541e^-4	0.826	SYNONYMOUS_CODING Alh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	18957265	2R_18957265_SNP [dm3] 2R_23069742_SNP [dm6]	C	T	3.557e^-4	0.826	UPSTREAM l_2_k09913 INTRON l_2_k09913	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11808585	2R_11808585_SNP [dm3] 2R_15921080_SNP [dm6]	T	C	3.560e^-4	0.826	INTRON sli	TF binding site BDTNP1_TFBS_dl
2L	5305013	2L_5305013_SNP [dm3] 2L_5305013_SNP [dm6]	A	T	3.560e^-4	0.826	UPSTREAM vri INTRON vri	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	21244623	3L_21244623_SNP [dm3] 3L_21251523_SNP [dm6]	C	G	3.571e^-4	0.826	INTRON Eip78C
2L	4129460	2L_4129460_SNP [dm3] 2L_4129460_SNP [dm6]	A	G	3.574e^-4	0.826	INTERGENIC
3L	21491287	3L_21491287_SNP [dm3] 3L_21498187_SNP [dm6]	A	G	3.575e^-4	0.826	UTR_3_PRIME Glg1 UPSTREAM Hr78 INTRON CR43933	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2L	19822550	2L_19822550_SNP [dm3] 2L_19822550_SNP [dm6]	A	C	3.582e^-4	0.826	INTRON sick
3R	7483603	3R_7483603_SNP [dm3] 3R_11657881_SNP [dm6]	C	T	3.582e^-4	0.826	INTRON CG42327	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16187579	3L_16187579_SNP [dm3] 3L_16194479_SNP [dm6]	C	A	3.585e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_cad
3R	15117802	3R_15117802_SNP [dm3] 3R_19292080_SNP [dm6]	G	T	3.588e^-4	0.826	INTERGENIC
3L	426180	3L_426180_SNP [dm3] 3L_426180_SNP [dm6]	C	T	3.590e^-4	0.826	INTERGENIC
2R	10444443	2R_10444443_SNP [dm3] 2R_14556938_SNP [dm6]	G	C	3.600e^-4	0.826	INTRON ttv
3L	1604477	3L_1604477_SNP [dm3] 3L_1604477_SNP [dm6]	C	T	3.603e^-4	0.826	SYNONYMOUS_CODING CG18170 START_GAINED CG33791 UTR_5_PRIME CG33791 UPSTREAM CG33791
X	8173782	X_8173782_SNP [dm3] X_8279749_SNP [dm6]	C	T	3.603e^-4	0.826	UTR_3_PRIME nAChRalpha3	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
2L	13040085	2L_13040085_SNP [dm3] 2L_13040085_SNP [dm6]	T	C	3.616e^-4	0.826	INTRON CG9932
3R	8387634	3R_8387634_SNP [dm3] 3R_12561912_SNP [dm6]	T	C	3.628e^-4	0.826	UTR_5_PRIME Octbeta2R UPSTREAM Octbeta2R INTRON Octbeta2R
2L	14871531	2L_14871531_SNP [dm3] 2L_14871531_SNP [dm6]	A	C	3.631e^-4	0.826	INTRON CG4480
3L	11284553	3L_11284553_SNP [dm3] 3L_11291453_SNP [dm6]	G	A	3.635e^-4	0.826	INTRON CG6175
3R	21906477	3R_21906477_SNP [dm3] 3R_26080755_SNP [dm6]	C	A	3.639e^-4	0.826	INTRON dys
2L	18910653	2L_18910653_SNP [dm3] 2L_18910653_SNP [dm6]	G	C	3.650e^-4	0.826	INTERGENIC
2L	1859435	2L_1859435_SNP [dm3] 2L_1859435_SNP [dm6]	A	T	3.652e^-4	0.826	DOWNSTREAM wry INTRON CG31663
2R	15884444	2R_15884444_SNP [dm3] 2R_19996939_SNP [dm6]	C	G	3.657e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_zfh1
X	17404716	X_17404716_INS [dm3] X_17510683_INS [dm6]	T	TAGTAGATATGT...	3.657e^-4	0.826	INTRON CG43658
3L	9554632	3L_9554632_SNP [dm3] 3L_9561532_SNP [dm6]	G	A	3.665e^-4	0.826	INTRON CG42673
2L	19244843	2L_19244843_SNP [dm3] 2L_19244843_SNP [dm6]	C	A	3.675e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	16053249	2R_16053249_SNP [dm3] 2R_20165744_SNP [dm6]	T	C	3.679e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_HSA
X	9721384	X_9721384_DEL [dm3] X_9827351_DEL [dm6]	AA	A	3.683e^-4	0.826	INTRON CG32698
3L	23722073	3L_23722073_SNP [dm3] 3L_23728973_SNP [dm6]	A	C	3.685e^-4	0.826	DOWNSTREAM CG40298 INTERGENIC
3R	8674001	3R_8674001_SNP [dm3] 3R_12848279_SNP [dm6]	T	C	3.686e^-4	0.826	UTR_5_PRIME beat-Va DOWNSTREAM CR45587
3L	1740467	3L_1740467_SNP [dm3] 3L_1740467_SNP [dm6]	A	C	3.697e^-4	0.826	INTRON Gk
2L	20477570	2L_20477570_SNP [dm3] 2L_20477570_SNP [dm6]	T	G	3.702e^-4	0.826	INTRON CR44980 EXON CR43234	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19566263	3L_19566263_SNP [dm3] 3L_19573163_SNP [dm6]	G	T	3.707e^-4	0.826	SYNONYMOUS_CODING Shal
2L	11942094	2L_11942094_SNP [dm3] 2L_11942094_SNP [dm6]	A	G	3.708e^-4	0.826	INTERGENIC	regulatory region REDfly_CRMs
2L	7153773	2L_7153773_SNP [dm3] 2L_7153773_SNP [dm6]	A	G	3.709e^-4	0.826	INTRON Pvf3
2R	11576600	2R_11576600_SNP [dm3] 2R_15689095_SNP [dm6]	G	T	3.720e^-4	0.826	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	21900498	3R_21900498_SNP [dm3] 3R_26074776_SNP [dm6]	A	C	3.729e^-4	0.826	INTERGENIC
X	2461622	X_2461622_INS [dm3] X_2567589_INS [dm6]	T	TT	3.729e^-4	0.826	INTRON Pdfr
X	5716777	X_5716777_SNP [dm3] X_5822744_SNP [dm6]	A	G	3.737e^-4	0.826	INTRON CG15765	TF binding site mE1_TFBS_chinmo
3L	8711596	3L_8711596_SNP [dm3] 3L_8718496_SNP [dm6]	G	A	3.750e^-4	0.826	DOWNSTREAM SrpRbeta INTERGENIC
2R	14899459	2R_14899459_SNP [dm3] 2R_19011954_SNP [dm6]	G	T	3.750e^-4	0.826	INTERGENIC
3R	2908169	3R_2908169_SNP [dm3] 3R_7082447_SNP [dm6]	C	T	3.755e^-4	0.826	DOWNSTREAM CG1091 INTRON Dpck	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	11648079	2R_11648079_SNP [dm3] 2R_15760574_SNP [dm6]	T	A	3.756e^-4	0.826	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3414365	2L_3414365_SNP [dm3] 2L_3414365_SNP [dm6]	A	G	3.757e^-4	0.826	INTRON pgant2
2L	4551957	2L_4551957_SNP [dm3] 2L_4551957_SNP [dm6]	C	G	3.761e^-4	0.826	INTRON dp
2R	13238216	2R_13238216_SNP [dm3] 2R_17350711_SNP [dm6]	T	C	3.767e^-4	0.826	INTRON mbl
3R	20433847	3R_20433847_SNP [dm3] 3R_24608125_SNP [dm6]	C	A	3.770e^-4	0.826	INTRON mld
2R	11812731	2R_11812731_SNP [dm3] 2R_15925226_SNP [dm6]	A	G	3.773e^-4	0.826	INTRON bdg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11168350	3L_11168350_SNP [dm3] 3L_11175250_SNP [dm6]	C	T	3.775e^-4	0.826	INTRON CG14142	TF binding site mE1_TFBS_cad
3L	10702270	3L_10702270_SNP [dm3] 3L_10709170_SNP [dm6]	C	A	3.776e^-4	0.826	INTERGENIC
3R	14090571	3R_14090571_SNP [dm3] 3R_18264849_SNP [dm6]	G	A	3.779e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	9147482	2R_9147482_SNP [dm3] 2R_13259977_SNP [dm6]	A	G	3.781e^-4	0.826	UPSTREAM CG42319 INTERGENIC
X	20273028	X_20273028_SNP [dm3] X_20402001_SNP [dm6]	A	G	3.799e^-4	0.826	SYNONYMOUS_CODING HERC2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6647730	3R_6647730_SNP [dm3] 3R_10822008_SNP [dm6]	T	C	3.800e^-4	0.826	INTERGENIC
2R	18157348	2R_18157348_SNP [dm3] 2R_22269843_SNP [dm6]	G	A	3.806e^-4	0.826	INTRON dve	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	954676	3L_954676_SNP [dm3] 3L_954676_SNP [dm6]	T	G	3.807e^-4	0.826	INTRON Glut1
3R	13565050	3R_13565050_SNP [dm3] 3R_17739328_SNP [dm6]	T	A	3.814e^-4	0.826	UPSTREAM TyrRII INTRON TyrRII
2R	8206887	2R_8206887_SNP [dm3] 2R_12319382_SNP [dm6]	A	T	3.816e^-4	0.826	INTERGENIC	transposable element FlyBase
2R	3669810	2R_3669810_SNP [dm3] 2R_7782305_SNP [dm6]	G	C	3.838e^-4	0.826	UTR_5_PRIME CG30497 & 1 other DOWNSTREAM cn	TF binding site mE1_TFBS_sens
2L	19908443	2L_19908443_SNP [dm3] 2L_19908443_SNP [dm6]	T	A	3.841e^-4	0.826	INTRON sick
2L	15090507	2L_15090507_SNP [dm3] 2L_15090507_SNP [dm6]	T	C	3.844e^-4	0.826	INTRON CG15270
2R	19204977	2R_19204977_SNP [dm3] 2R_23317454_SNP [dm6]	T	C	3.844e^-4	0.826	DOWNSTREAM CG30412 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	21673069	3R_21673069_SNP [dm3] 3R_25847347_SNP [dm6]	T	C	3.849e^-4	0.826	UPSTREAM CR45657 DOWNSTREAM CR45655 EXON CR45656
3L	4697521	3L_4697521_SNP [dm3] 3L_4697521_SNP [dm6]	A	G	3.850e^-4	0.826	UPSTREAM CG13713 INTRON RhoGEF64C	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	12632367	3L_12632367_SNP [dm3] 3L_12639267_SNP [dm6]	A	G	3.853e^-4	0.826	INTRON CR32111
3L	15587907	3L_15587907_SNP [dm3] 3L_15594807_SNP [dm6]	G	T	3.861e^-4	0.826	INTRON RhoGAP71E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	21523343	3L_21523343_SNP [dm3] 3L_21530243_SNP [dm6]	T	A	3.862e^-4	0.826	UTR_3_PRIME Mkrn1 UPSTREAM CG32442 DOWNSTREAM Mkrn1	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	5034569	2R_5034569_SNP [dm3] 2R_9147064_SNP [dm6]	T	G	3.864e^-4	0.826	INTRON CG30344
X	20403448	X_20403448_SNP [dm3] X_20532421_SNP [dm6]	C	T	3.882e^-4	0.826	INTERGENIC
3L	6714372	3L_6714372_SNP [dm3] 3L_6721272_SNP [dm6]	T	A	3.882e^-4	0.826	INTERGENIC
2L	16382016	2L_16382016_SNP [dm3] 2L_16382016_SNP [dm6]	A	G	3.884e^-4	0.826	INTERGENIC
2L	16382028	2L_16382028_SNP [dm3] 2L_16382028_SNP [dm6]	C	T	3.884e^-4	0.826	INTERGENIC
2R	11724800	2R_11724800_SNP [dm3] 2R_15837295_SNP [dm6]	A	T	3.885e^-4	0.826	INTRON tun	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	14813812	3L_14813812_SNP [dm3] 3L_14820712_SNP [dm6]	C	A	3.889e^-4	0.826	INTRON CG17839
3L	11146537	3L_11146537_SNP [dm3] 3L_11153437_SNP [dm6]	G	T	3.891e^-4	0.826	INTRON CG32082
X	8156039	X_8156039_SNP [dm3] X_8262006_SNP [dm6]	A	T	3.892e^-4	0.826	INTRON CG1632
2L	9926562	2L_9926562_SNP [dm3] 2L_9926562_SNP [dm6]	G	A	3.900e^-4	0.826	SPLICE_SITE_REGION CG42366 INTRON CG42366	TF binding site mE1_TFBS_cad
2R	11816799	2R_11816799_SNP [dm3] 2R_15929294_SNP [dm6]	C	T	3.903e^-4	0.826	UPSTREAM bdg INTRON bdg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	1174853	X_1174853_SNP [dm3] X_1280820_SNP [dm6]	A	G	3.907e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	3665703	2R_3665703_SNP [dm3] 2R_7778198_SNP [dm6]	T	G	3.922e^-4	0.826	INTRON CG30497 & 1 other
2R	9150450	2R_9150450_SNP [dm3] 2R_13262945_SNP [dm6]	G	A	3.928e^-4	0.826	SYNONYMOUS_CODING CG42319
3R	3962357	3R_3962357_SNP [dm3] 3R_8136635_SNP [dm6]	T	A	3.935e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	5029833	2R_5029833_SNP [dm3] 2R_9142328_SNP [dm6]	C	T	3.936e^-4	0.826	UTR_3_PRIME shrb DOWNSTREAM CG8788 & 1 other
3L	1109916	3L_1109916_SNP [dm3] 3L_1109916_SNP [dm6]	C	T	3.938e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	6054835	3L_6054835_SNP [dm3] 3L_6061735_SNP [dm6]	T	G	3.943e^-4	0.826	DOWNSTREAM CG6592 INTRON CG10472
X	4091094	X_4091094_DEL [dm3] X_4197061_DEL [dm6]	AAA	A	3.946e^-4	0.826	INTRON Fas2
3R	4121649	3R_4121649_SNP [dm3] 3R_8295927_SNP [dm6]	G	C	3.953e^-4	0.826	NON_SYNONYMOUS_CODING CG9626	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	3096845	3L_3096845_SNP [dm3] 3L_3096845_SNP [dm6]	T	A	3.955e^-4	0.826	UPSTREAM tRNA:CR32286 DOWNSTREAM tRNA:CR32272 & 3 others INTRON Cht7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	8546733	3L_8546733_SNP [dm3] 3L_8553633_SNP [dm6]	G	A	3.956e^-4	0.826	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14376180	3L_14376180_SNP [dm3] 3L_14383080_SNP [dm6]	C	T	3.983e^-4	0.826	UTR_3_PRIME CG43120
3R	25567563	3R_25567563_SNP [dm3] 3R_29741841_SNP [dm6]	A	C	4.000e^-4	0.826	UTR_3_PRIME CG1969 DOWNSTREAM CG7609
X	5603582	X_5603582_SNP [dm3] X_5709549_SNP [dm6]	G	A	4.002e^-4	0.826	SYNONYMOUS_CODING CG33080 DOWNSTREAM CG4096	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	4426085	3L_4426085_SNP [dm3] 3L_4426085_SNP [dm6]	T	C	4.005e^-4	0.826	SYNONYMOUS_CODING CG15020
X	9536313	X_9536313_SNP [dm3] X_9642280_SNP [dm6]	C	A	4.018e^-4	0.826	INTRON l_1_G0232
2R	6016574	2R_6016574_SNP [dm3] 2R_10129069_SNP [dm6]	G	A	4.020e^-4	0.826	INTRON gem	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	17889189	2R_17889189_SNP [dm3] 2R_22001684_SNP [dm6]	C	G	4.024e^-4	0.826	INTRON CG34370
3R	14618452	3R_14618452_SNP [dm3] 3R_18792730_SNP [dm6]	G	A	4.025e^-4	0.826	UPSTREAM CG7720 INTRON CG7720
2R	4986519	2R_4986519_INS [dm3] 2R_9099014_INS [dm6]	T	TCCCCACT	4.035e^-4	0.826	UPSTREAM CG8078 INTRON CG8777	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5495429	2L_5495429_SNP [dm3] 2L_5495429_SNP [dm6]	G	T	4.035e^-4	0.826	INTERGENIC
3R	2849733	3R_2849733_SNP [dm3] 3R_7024011_SNP [dm6]	G	T	4.041e^-4	0.826	INTERGENIC
X	13085410	X_13085410_SNP [dm3] X_13191377_SNP [dm6]	G	A	4.045e^-4	0.826	SYNONYMOUS_CODING CG12723	TF binding site mE1_TFBS_chinmo
X	17405694	X_17405694_SNP [dm3] X_17511661_SNP [dm6]	C	T	4.054e^-4	0.826	INTRON CG43658	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	1162897	X_1162897_SNP [dm3] X_1268864_SNP [dm6]	G	A	4.057e^-4	0.826	INTRON Atf3
3L	1405914	3L_1405914_SNP [dm3] 3L_1405914_SNP [dm6]	A	T	4.059e^-4	0.826	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	10544231	2R_10544231_SNP [dm3] 2R_14656726_SNP [dm6]	A	G	4.063e^-4	0.826	DOWNSTREAM Adgf-E INTERGENIC
X	4091100	X_4091100_SNP [dm3] X_4197067_SNP [dm6]	G	C	4.064e^-4	0.826	INTRON Fas2
3L	21483362	3L_21483362_SNP [dm3] 3L_21490262_SNP [dm6]	C	T	4.064e^-4	0.826	INTRON Neu2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10487154	2L_10487154_SNP [dm3] 2L_10487154_SNP [dm6]	A	C	4.071e^-4	0.826	NON_SYNONYMOUS_CODING CG7456	TF binding site mE1_TFBS_inv
2R	20252359	2R_20252359_SNP [dm3] 2R_24364836_SNP [dm6]	C	T	4.073e^-4	0.826	INTRON bs & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3417120	2L_3417120_SNP [dm3] 2L_3417120_SNP [dm6]	G	T	4.083e^-4	0.826	NON_SYNONYMOUS_CODING CG31952 INTRON pgant2
X	21930245	X_21930245_SNP [dm3] X_22528409_SNP [dm6]	G	C	4.084e^-4	0.826	NON_SYNONYMOUS_CODING CG17600
X	20554876	X_20554876_SNP [dm3] X_20683849_SNP [dm6]	T	C	4.085e^-4	0.826	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
X	9914255	X_9914255_SNP [dm3] X_10020222_SNP [dm6]	C	T	4.092e^-4	0.826	INTRON Cht6
3L	8711560	3L_8711560_SNP [dm3] 3L_8718460_SNP [dm6]	G	A	4.094e^-4	0.826	DOWNSTREAM SrpRbeta INTERGENIC
3L	8711562	3L_8711562_SNP [dm3] 3L_8718462_SNP [dm6]	A	T	4.094e^-4	0.826	DOWNSTREAM SrpRbeta INTERGENIC
3L	8711570	3L_8711570_SNP [dm3] 3L_8718470_SNP [dm6]	T	A	4.094e^-4	0.826	DOWNSTREAM SrpRbeta INTERGENIC
3R	8681298	3R_8681298_SNP [dm3] 3R_12855576_SNP [dm6]	A	T	4.104e^-4	0.826	UTR_3_PRIME CG10126
2L	13605161	2L_13605161_SNP [dm3] 2L_13605161_SNP [dm6]	T	A	4.108e^-4	0.826	INTRON kuz
2R	11573498	2R_11573498_SNP [dm3] 2R_15685993_SNP [dm6]	A	T	4.108e^-4	0.826	SYNONYMOUS_CODING CG30082 INTRON Ranbp11
2R	11808690	2R_11808690_SNP [dm3] 2R_15921185_SNP [dm6]	C	G	4.124e^-4	0.826	INTRON sli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8151058	2R_8151058_SNP [dm3] 2R_12263553_SNP [dm6]	G	A	4.124e^-4	0.826	UPSTREAM Cam INTRON Cam
2R	11621031	2R_11621031_SNP [dm3] 2R_15733526_SNP [dm6]	G	T	4.133e^-4	0.826	INTRON CG30089	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18272150	3L_18272150_SNP [dm3] 3L_18279050_SNP [dm6]	T	C	4.134e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	12660311	3L_12660311_SNP [dm3] 3L_12667211_SNP [dm6]	G	T	4.135e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21634122	3L_21634122_SNP [dm3] 3L_21641022_SNP [dm6]	C	A	4.137e^-4	0.826	UTR_5_PRIME Atox1 DOWNSTREAM CG32445	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
3L	21634123	3L_21634123_SNP [dm3] 3L_21641023_SNP [dm6]	C	A	4.137e^-4	0.826	UTR_5_PRIME Atox1 DOWNSTREAM CG32445	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
X	2595381	X_2595381_SNP [dm3] X_2701348_SNP [dm6]	A	T	4.141e^-4	0.826	UTR_3_PRIME Csat DOWNSTREAM CG2662
2L	10138128	2L_10138128_SNP [dm3] 2L_10138128_SNP [dm6]	A	G	4.148e^-4	0.826	INTRON CG44153
X	8404189	X_8404189_SNP [dm3] X_8510156_SNP [dm6]	G	A	4.158e^-4	0.826	UTR_5_PRIME CG33181 INTRON CG33181	TF binding site BDTNP1_TFBS_dl
3R	20871496	3R_20871496_DEL [dm3] 3R_25045774_DEL [dm6]	TGCG	A	4.162e^-4	0.826	UPSTREAM 5PtaseI & 1 other INTERGENIC
3L	3096703	3L_3096703_INS [dm3] 3L_3096703_INS [dm6]	T	TA	4.168e^-4	0.826	UPSTREAM tRNA:CR32286 DOWNSTREAM tRNA:CR32288 & 4 others INTRON Cht7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3096737	3L_3096737_SNP [dm3] 3L_3096737_SNP [dm6]	T	G	4.168e^-4	0.826	UPSTREAM tRNA:CR32286 DOWNSTREAM tRNA:CR32288 & 4 others INTRON Cht7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3096887	3L_3096887_SNP [dm3] 3L_3096887_SNP [dm6]	T	A	4.168e^-4	0.826	UPSTREAM tRNA:CR32286 DOWNSTREAM tRNA:CR32272 & 3 others INTRON Cht7	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3096991	3L_3096991_SNP [dm3] 3L_3096991_SNP [dm6]	G	C	4.168e^-4	0.826	UPSTREAM tRNA:CR32286 & 1 other DOWNSTREAM tRNA:CR32289 & 2 others INTRON Cht7	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3097190	3L_3097190_SNP [dm3] 3L_3097190_SNP [dm6]	G	A	4.168e^-4	0.826	UPSTREAM tRNA:CR32286 & 1 other DOWNSTREAM tRNA:CR32287 & 1 other INTRON Cht7	TF binding site mE1_TFBS_HSA
3L	3097195	3L_3097195_SNP [dm3] 3L_3097195_SNP [dm6]	G	A	4.168e^-4	0.826	UPSTREAM tRNA:CR32286 & 1 other DOWNSTREAM tRNA:CR32287 & 1 other INTRON Cht7	TF binding site mE1_TFBS_HSA
3L	3097298	3L_3097298_SNP [dm3] 3L_3097298_SNP [dm6]	A	T	4.168e^-4	0.826	UPSTREAM tRNA:CR32286 & 1 other DOWNSTREAM tRNA:CR32287 & 1 other INTRON Cht7	TF binding site mE1_TFBS_HSA
3R	18793837	3R_18793837_SNP [dm3] 3R_22968115_SNP [dm6]	G	C	4.172e^-4	0.826	DOWNSTREAM Tpl94D INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9501665	2L_9501665_SNP [dm3] 2L_9501665_SNP [dm6]	C	T	4.176e^-4	0.826	INTRON CG33298
2L	4397595	2L_4397595_SNP [dm3] 2L_4397595_SNP [dm6]	T	C	4.179e^-4	0.826	SYNONYMOUS_CODING l_2_k05819	TF binding site mE1_TFBS_HSA
2L	19908434	2L_19908434_SNP [dm3] 2L_19908434_SNP [dm6]	T	G	4.192e^-4	0.826	INTRON sick
3L	21498203	3L_21498203_SNP [dm3] 3L_21505103_SNP [dm6]	C	A	4.200e^-4	0.826	NON_SYNONYMOUS_CODING Glg1	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	21516559	3L_21516559_SNP [dm3] 3L_21523459_SNP [dm6]	G	T	4.200e^-4	0.826	UTR_5_PRIME CG7611 DOWNSTREAM Cdk12 INTRON CG7611	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	13130663	3R_13130663_SNP [dm3] 3R_17304941_SNP [dm6]	C	G	4.206e^-4	0.826	INTERGENIC
2R	11582501	2R_11582501_SNP [dm3] 2R_15694996_SNP [dm6]	G	C	4.207e^-4	0.826	SYNONYMOUS_CODING CG33460 UPSTREAM CG33461
3L	18641559	3L_18641559_SNP [dm3] 3L_18648459_SNP [dm6]	A	G	4.213e^-4	0.826	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4427168	2L_4427168_SNP [dm3] 2L_4427168_SNP [dm6]	C	T	4.218e^-4	0.826	INTRON CG15431
2L	12527947	2L_12527947_SNP [dm3] 2L_12527947_SNP [dm6]	C	T	4.221e^-4	0.826	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14388106	3L_14388106_SNP [dm3] 3L_14395006_SNP [dm6]	C	T	4.226e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	7389681	2L_7389681_SNP [dm3] 2L_7389681_SNP [dm6]	G	A	4.234e^-4	0.826	SYNONYMOUS_CODING gudu
3L	17892732	3L_17892732_SNP [dm3] 3L_17899632_SNP [dm6]	G	A	4.240e^-4	0.826	SYNONYMOUS_CODING Prestin
3R	17616380	3R_17616380_SNP [dm3] 3R_21790658_SNP [dm6]	T	A	4.245e^-4	0.826	INTRON CASK	TF binding site BDTNP1_TFBS_twi
2L	10792227	2L_10792227_INS [dm3] 2L_10792227_INS [dm6]	A	ATAACAAAAATGTA...	4.257e^-4	0.826	DOWNSTREAM CG31870 INTRON CG31869
2L	7123535	2L_7123535_SNP [dm3] 2L_7123535_SNP [dm6]	A	T	4.277e^-4	0.826	INTRON Pvf3
2R	9631185	2R_9631185_SNP [dm3] 2R_13743680_SNP [dm6]	A	G	4.282e^-4	0.826	INTRON fas
2R	19331786	2R_19331786_SNP [dm3] 2R_23444263_SNP [dm6]	A	G	4.286e^-4	0.826	START_GAINED CG43795 UTR_5_PRIME CG43795	TF binding site BDTNP1_TFBS_dl
3R	24357317	3R_24357317_SNP [dm3] 3R_28531595_SNP [dm6]	G	A	4.297e^-4	0.826	INTRON Ppn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	412601	3L_412601_SNP [dm3] 3L_412601_SNP [dm6]	T	C	4.298e^-4	0.826	INTERGENIC
3L	3096734	3L_3096734_SNP [dm3] 3L_3096734_SNP [dm6]	T	A	4.301e^-4	0.826	UPSTREAM tRNA:CR32286 DOWNSTREAM tRNA:CR32288 & 4 others INTRON Cht7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	712384	3L_712384_SNP [dm3] 3L_712384_SNP [dm6]	T	C	4.304e^-4	0.826	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	21902192	2L_21902192_SNP [dm3] 2L_21902192_SNP [dm6]	A	C	4.314e^-4	0.826	UPSTREAM CG1421 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11812760	2R_11812760_SNP [dm3] 2R_15925255_SNP [dm6]	C	T	4.317e^-4	0.826	INTRON bdg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10258426	2L_10258426_SNP [dm3] 2L_10258426_SNP [dm6]	A	G	4.319e^-4	0.826	INTRON Pten
2R	4725873	2R_4725873_SNP [dm3] 2R_8838368_SNP [dm6]	C	A	4.321e^-4	0.826	INTRON sns	TF binding site mE1_TFBS_chinmo
3L	12287379	3L_12287379_SNP [dm3] 3L_12294279_SNP [dm6]	T	A	4.322e^-4	0.826	INTRON CG4328
3L	9495592	3L_9495592_SNP [dm3] 3L_9502492_SNP [dm6]	T	C	4.323e^-4	0.826	INTRON path	TF binding site BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	3558892	2L_3558892_SNP [dm3] 2L_3558892_SNP [dm6]	G	A	4.323e^-4	0.826	INTERGENIC
2L	3558919	2L_3558919_SNP [dm3] 2L_3558919_SNP [dm6]	C	T	4.323e^-4	0.826	INTERGENIC
3L	3966618	3L_3966618_DEL [dm3] 3L_3966618_DEL [dm6]	CCGCTGTCC	C	4.327e^-4	0.826	INTERGENIC
2R	15844103	2R_15844103_SNP [dm3] 2R_19956598_SNP [dm6]	T	C	4.329e^-4	0.826	SYNONYMOUS_CODING CG44623
2L	767635	2L_767635_SNP [dm3] 2L_767635_SNP [dm6]	A	G	4.339e^-4	0.826	INTERGENIC
3L	10970777	3L_10970777_SNP [dm3] 3L_10977677_SNP [dm6]	T	C	4.339e^-4	0.826	DOWNSTREAM CR45745 INTERGENIC
2L	4148017	2L_4148017_SNP [dm3] 2L_4148017_SNP [dm6]	T	G	4.345e^-4	0.826	INTERGENIC
2R	2130593	2R_2130593_SNP [dm3] 2R_6243088_SNP [dm6]	C	T	4.345e^-4	0.826	INTRON Pld
3L	4545925	3L_4545925_SNP [dm3] 3L_4545925_SNP [dm6]	C	A	4.353e^-4	0.826	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18769488	2R_18769488_SNP [dm3] 2R_22881965_SNP [dm6]	G	A	4.366e^-4	0.826	DOWNSTREAM PIP5K59B & 1 other INTRON CG3501	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4091162	X_4091162_DEL [dm3] X_4197129_DEL [dm6]	TAT	T	4.375e^-4	0.826	INTRON Fas2
2R	6671281	2R_6671281_SNP [dm3] 2R_10783776_SNP [dm6]	T	C	4.376e^-4	0.826	UPSTREAM CG33144 INTRON CG33144 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	5114892	2R_5114892_SNP [dm3] 2R_9227387_SNP [dm6]	T	C	4.377e^-4	0.826	DOWNSTREAM hig INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	9694478	3L_9694478_SNP [dm3] 3L_9701378_SNP [dm6]	A	G	4.383e^-4	0.826	DOWNSTREAM UbcD4 INTRON CG6761	TF binding site mE1_TFBS_cad
2L	7934991	2L_7934991_SNP [dm3] 2L_7934991_SNP [dm6]	G	T	4.383e^-4	0.826	INTRON Snoo
2R	18933150	2R_18933150_SNP [dm3] 2R_23045627_SNP [dm6]	C	T	4.384e^-4	0.826	UPSTREAM twi INTRON twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	5977605	2R_5977605_SNP [dm3] 2R_10090100_SNP [dm6]	A	G	4.385e^-4	0.826	INTRON CG2269
2L	19146871	2L_19146871_SNP [dm3] 2L_19146871_SNP [dm6]	C	T	4.386e^-4	0.826	INTRON brat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13739800	2R_13739800_SNP [dm3] 2R_17852295_SNP [dm6]	G	T	4.387e^-4	0.826	UPSTREAM CG30323 INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3095934	3L_3095934_SNP [dm3] 3L_3095934_SNP [dm6]	G	A	4.388e^-4	0.826	UPSTREAM tRNA:CR32289 & 2 others DOWNSTREAM tRNA:CR32288 & 1 other INTRON Cht7	TF binding site BDTNP1_TFBS_dl
3R	15407511	3R_15407511_SNP [dm3] 3R_19581789_SNP [dm6]	C	A	4.388e^-4	0.826	INTRON Dys
3R	14231418	3R_14231418_SNP [dm3] 3R_18405696_SNP [dm6]	G	C	4.390e^-4	0.826	SYNONYMOUS_CODING CG7685 DOWNSTREAM koko & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3962355	3R_3962355_SNP [dm3] 3R_8136633_SNP [dm6]	C	T	4.391e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	4898348	2R_4898348_SNP [dm3] 2R_9010843_SNP [dm6]	C	A	4.396e^-4	0.826	INTRON CG8172
3L	3096833	3L_3096833_SNP [dm3] 3L_3096833_SNP [dm6]	C	T	4.396e^-4	0.826	UPSTREAM tRNA:CR32286 DOWNSTREAM tRNA:CR32272 & 3 others INTRON Cht7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	20433874	3R_20433874_SNP [dm3] 3R_24608152_SNP [dm6]	T	A	4.403e^-4	0.826	INTRON mld
2R	19024797	2R_19024797_SNP [dm3] 2R_23137274_SNP [dm6]	C	T	4.408e^-4	0.826	INTERGENIC
X	16051379	X_16051379_SNP [dm3] X_16157346_SNP [dm6]	A	C	4.409e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	6194631	2L_6194631_SNP [dm3] 2L_6194631_SNP [dm6]	T	A	4.425e^-4	0.826	INTRON CG34380	TF binding site mE1_TFBS_chinmo
2R	20230983	2R_20230983_SNP [dm3] 2R_24343460_SNP [dm6]	A	T	4.426e^-4	0.826	UTR_5_PRIME bs UPSTREAM bs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	2645041	3L_2645041_SNP [dm3] 3L_2645041_SNP [dm6]	G	T	4.429e^-4	0.826	UPSTREAM CG1143 INTERGENIC
2L	8507577	2L_8507577_SNP [dm3] 2L_8507577_SNP [dm6]	T	A	4.439e^-4	0.826	UPSTREAM Dh31 INTERGENIC
2R	3264528	2R_3264528_SNP [dm3] 2R_7377023_SNP [dm6]	C	T	4.440e^-4	0.826	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12530059	2R_12530059_SNP [dm3] 2R_16642554_SNP [dm6]	C	T	4.445e^-4	0.826	INTRON gprs
X	20554777	X_20554777_SNP [dm3] X_20683750_SNP [dm6]	A	G	4.453e^-4	0.826	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
3R	4930464	3R_4930464_DEL [dm3] 3R_9104742_DEL [dm6]	CC	C	4.458e^-4	0.826	INTRON pum
3R	20347647	3R_20347647_SNP [dm3] 3R_24521925_SNP [dm6]	T	C	4.489e^-4	0.826	UTR_3_PRIME Pp1alpha-96A DOWNSTREAM Pp1alpha-96A & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1846980	2L_1846980_SNP [dm3] 2L_1846980_SNP [dm6]	A	C	4.493e^-4	0.826	INTRON wry
3R	15407493	3R_15407493_SNP [dm3] 3R_19581771_SNP [dm6]	A	T	4.495e^-4	0.826	INTRON Dys
2L	6830416	2L_6830416_SNP [dm3] 2L_6830416_SNP [dm6]	C	T	4.498e^-4	0.826	INTRON sens-2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	19397731	2R_19397731_SNP [dm3] 2R_23510208_SNP [dm6]	G	A	4.498e^-4	0.826	INTERGENIC
3L	6054617	3L_6054617_SNP [dm3] 3L_6061517_SNP [dm6]	A	G	4.498e^-4	0.826	SYNONYMOUS_CODING CG10472 DOWNSTREAM CG6592
2L	20991750	2L_20991750_SNP [dm3] 2L_20991750_SNP [dm6]	A	C	4.500e^-4	0.826	INTRON CG42238
2R	15883771	2R_15883771_SNP [dm3] 2R_19996266_SNP [dm6]	G	A	4.510e^-4	0.826	INTERGENIC
3L	4154277	3L_4154277_SNP [dm3] 3L_4154277_SNP [dm6]	G	T	4.511e^-4	0.826	INTRON nab
2L	17805147	2L_17805147_DEL [dm3] 2L_17805147_DEL [dm6]	CTATTG	T	4.517e^-4	0.826	INTRON CadN2
3L	9566829	3L_9566829_SNP [dm3] 3L_9573729_SNP [dm6]	T	C	4.532e^-4	0.826	INTRON CG42673
2R	8124392	2R_8124392_DEL [dm3] 2R_12236887_DEL [dm6]	AATGC	A	4.538e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	12486718	3R_12486718_SNP [dm3] 3R_16660996_SNP [dm6]	C	T	4.542e^-4	0.826	INTRON Ubx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6090501	2L_6090501_SNP [dm3] 2L_6090501_SNP [dm6]	C	T	4.542e^-4	0.826	UPSTREAM Kr-h1 & 1 other INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	9304964	3R_9304964_SNP [dm3] 3R_13479242_SNP [dm6]	A	T	4.551e^-4	0.826	DOWNSTREAM CR45589 INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.562e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.04488

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	6.6654	0.0357

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2076 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	1.827e^-6	0.889	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16289150	2R_16289150_SNP [dm3] 2R_20401645_SNP [dm6]	G	A	2.609e^-6	0.889	INTERGENIC
3L	14815037	3L_14815037_SNP [dm3] 3L_14821937_SNP [dm6]	A	C	5.823e^-6	0.889	INTRON CG17839
3L	14815465	3L_14815465_SNP [dm3] 3L_14822365_SNP [dm6]	G	A	6.106e^-6	0.889	INTRON CG17839
3L	14817336	3L_14817336_SNP [dm3] 3L_14824236_SNP [dm6]	G	A	6.279e^-6	0.889	INTRON CG17839
3L	14817946	3L_14817946_SNP [dm3] 3L_14824846_SNP [dm6]	A	G	6.480e^-6	0.889	INTRON CG17839
3L	14813879	3L_14813879_SNP [dm3] 3L_14820779_SNP [dm6]	A	T	7.424e^-6	0.889	INTRON CG17839
3L	14813565	3L_14813565_SNP [dm3] 3L_14820465_SNP [dm6]	G	A	9.561e^-6	0.889	INTRON CG17839
3L	14813948	3L_14813948_SNP [dm3] 3L_14820848_SNP [dm6]	G	A	1.036e^-5	0.889	INTRON CG17839
2R	14086288	2R_14086288_SNP [dm3] 2R_18198783_SNP [dm6]	A	C	1.061e^-5	0.889	INTERGENIC
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	1.064e^-5	0.889	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15559759	X_15559759_SNP [dm3] X_15665726_SNP [dm6]	A	G	1.101e^-5	0.889	UPSTREAM CR43299 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	14817116	3L_14817116_SNP [dm3] 3L_14824016_SNP [dm6]	A	T	1.107e^-5	0.889	INTRON CG17839
3R	13570329	3R_13570329_SNP [dm3] 3R_17744607_SNP [dm6]	A	C	1.194e^-5	0.889	INTRON TyrRII	TF binding site mE1_TFBS_cad
2L	1931534	2L_1931534_SNP [dm3] 2L_1931534_SNP [dm6]	A	G	1.207e^-5	0.889	INTRON CG7337
3L	2644859	3L_2644859_SNP [dm3] 3L_2644859_SNP [dm6]	C	T	1.243e^-5	0.889	UPSTREAM CG1143 INTERGENIC
3R	20851748	3R_20851748_SNP [dm3] 3R_25026026_SNP [dm6]	G	A	1.276e^-5	0.889	SYNONYMOUS_CODING Hr96	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3R	13175133	3R_13175133_SNP [dm3] 3R_17349411_SNP [dm6]	A	C	1.330e^-5	0.889	INTRON beat-IIa
3R	4331834	3R_4331834_SNP [dm3] 3R_8506112_SNP [dm6]	C	T	1.339e^-5	0.889	INTERGENIC	TF binding site mE1_TFBS_cad
3L	14813646	3L_14813646_SNP [dm3] 3L_14820546_SNP [dm6]	G	A	1.344e^-5	0.889	INTRON CG17839
3L	14828782	3L_14828782_SNP [dm3] 3L_14835682_SNP [dm6]	A	C	1.642e^-5	0.889	INTRON CG17839
2L	11686657	2L_11686657_SNP [dm3] 2L_11686657_SNP [dm6]	T	C	1.792e^-5	0.889	INTERGENIC
3L	18359255	3L_18359255_SNP [dm3] 3L_18366155_SNP [dm6]	A	C	1.912e^-5	0.889	INTERGENIC	TF binding site mE1_TFBS_cad
2R	15844015	2R_15844015_SNP [dm3] 2R_19956510_SNP [dm6]	A	C	1.925e^-5	0.889	SYNONYMOUS_CODING CG44623
2R	11648030	2R_11648030_SNP [dm3] 2R_15760525_SNP [dm6]	A	T	1.972e^-5	0.889	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4400876	3R_4400876_INS [dm3] 3R_8575154_INS [dm6]	T	TT	2.001e^-5	0.889	INTERGENIC
3R	9916835	3R_9916835_SNP [dm3] 3R_14091113_SNP [dm6]	C	T	2.057e^-5	0.889	INTRON Npc2b
3L	19448906	3L_19448906_SNP [dm3] 3L_19455806_SNP [dm6]	A	G	2.058e^-5	0.889	DOWNSTREAM CR45434 INTERGENIC
3L	14811233	3L_14811233_SNP [dm3] 3L_14818133_SNP [dm6]	C	T	2.183e^-5	0.889	INTRON CG17839
2L	19737343	2L_19737343_SNP [dm3] 2L_19737343_SNP [dm6]	G	T	2.225e^-5	0.889	DOWNSTREAM Nf-YB INTERGENIC
3L	10694223	3L_10694223_SNP [dm3] 3L_10701123_SNP [dm6]	C	A	2.407e^-5	0.889	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13238252	2R_13238252_SNP [dm3] 2R_17350747_SNP [dm6]	A	C	2.478e^-5	0.889	INTRON mbl
3L	10694245	3L_10694245_SNP [dm3] 3L_10701145_SNP [dm6]	G	A	2.508e^-5	0.889	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9873427	3L_9873427_SNP [dm3] 3L_9880327_SNP [dm6]	A	G	2.618e^-5	0.889	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
X	2926734	X_2926734_SNP [dm3] X_3032701_SNP [dm6]	C	A	2.619e^-5	0.889	INTRON kirre
2L	15084985	2L_15084985_SNP [dm3] 2L_15084985_SNP [dm6]	A	T	2.627e^-5	0.889	INTRON CG15270
2R	11576600	2R_11576600_SNP [dm3] 2R_15689095_SNP [dm6]	G	T	2.689e^-5	0.889	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	2926031	X_2926031_SNP [dm3] X_3031998_SNP [dm6]	C	A	2.693e^-5	0.889	INTRON kirre
3L	14813812	3L_14813812_SNP [dm3] 3L_14820712_SNP [dm6]	C	A	2.734e^-5	0.889	INTRON CG17839
2R	11576437	2R_11576437_SNP [dm3] 2R_15688932_SNP [dm6]	T	C	2.817e^-5	0.889	NON_SYNONYMOUS_CODING Cep89 UPSTREAM CG30090	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	14814974	3L_14814974_SNP [dm3] 3L_14821874_SNP [dm6]	A	G	2.823e^-5	0.889	INTRON CG17839
2R	12520352	2R_12520352_SNP [dm3] 2R_16632847_SNP [dm6]	G	T	2.988e^-5	0.889	SYNONYMOUS_CODING Alk	TF binding site mE1_TFBS_cad
2R	18278806	2R_18278806_SNP [dm3] 2R_22391301_SNP [dm6]	A	G	2.992e^-5	0.889	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11647915	2R_11647915_SNP [dm3] 2R_15760410_SNP [dm6]	G	A	3.051e^-5	0.889	INTRON CG30089	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12896052	2L_12896052_SNP [dm3] 2L_12896052_SNP [dm6]	T	C	3.058e^-5	0.889	INTERGENIC
2R	12696827	2R_12696827_SNP [dm3] 2R_16809322_SNP [dm6]	C	A	3.149e^-5	0.889	INTERGENIC
3R	13469273	3R_13469273_SNP [dm3] 3R_17643551_SNP [dm6]	T	C	3.227e^-5	0.889	INTRON CG43175
X	8678837	X_8678837_SNP [dm3] X_8784804_SNP [dm6]	C	T	3.247e^-5	0.889	INTRON Lim1
3L	12446661	3L_12446661_SNP [dm3] 3L_12453561_SNP [dm6]	A	G	3.269e^-5	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_Kr
3R	15047041	3R_15047041_DEL [dm3] 3R_19221319_DEL [dm6]	CACATAATAC	C	3.291e^-5	0.889	INTRON vib	TF binding site mE1_TFBS_inv
X	8402577	X_8402577_SNP [dm3] X_8508544_SNP [dm6]	G	A	3.336e^-5	0.889	INTRON CG33181
3L	14057292	3L_14057292_SNP [dm3] 3L_14064192_SNP [dm6]	C	T	3.425e^-5	0.889	INTRON CG32138	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	15843970	2R_15843970_SNP [dm3] 2R_19956465_SNP [dm6]	C	T	3.437e^-5	0.889	SYNONYMOUS_CODING CG44623
3L	19472074	3L_19472074_SNP [dm3] 3L_19478974_SNP [dm6]	G	A	3.473e^-5	0.889	UPSTREAM CR32207 DOWNSTREAM CR42842 INTERGENIC
2L	7057433	2L_7057433_SNP [dm3] 2L_7057433_SNP [dm6]	C	T	3.553e^-5	0.889	SYNONYMOUS_CODING Mnn1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	20936762	X_20936762_SNP [dm3] X_21065735_SNP [dm6]	G	A	3.684e^-5	0.889	INTRON bves & 1 other
3L	3680402	3L_3680402_SNP [dm3] 3L_3680402_SNP [dm6]	T	C	3.692e^-5	0.889	INTERGENIC
3L	14827010	3L_14827010_SNP [dm3] 3L_14833910_SNP [dm6]	G	T	3.799e^-5	0.889	INTRON CG17839
X	8404903	X_8404903_DEL [dm3] X_8510870_DEL [dm6]	ATTA	A	3.841e^-5	0.889	INTRON CG33181	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11686646	2L_11686646_SNP [dm3] 2L_11686646_SNP [dm6]	A	T	3.961e^-5	0.889	INTERGENIC
3L	4164481	3L_4164481_SNP [dm3] 3L_4164481_SNP [dm6]	A	T	4.060e^-5	0.889	SYNONYMOUS_CODING mas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12030323	2L_12030323_SNP [dm3] 2L_12030323_SNP [dm6]	C	A	4.107e^-5	0.889	INTRON dmGlut	TF binding site mE1_TFBS_cad
3L	10197266	3L_10197266_SNP [dm3] 3L_10204166_SNP [dm6]	A	G	4.108e^-5	0.889	INTERGENIC
3L	10691485	3L_10691485_SNP [dm3] 3L_10698385_SNP [dm6]	T	G	4.141e^-5	0.889	INTERGENIC
X	1931082	X_1931082_SNP [dm3] X_2037049_SNP [dm6]	A	G	4.173e^-5	0.889	UPSTREAM Actn INTRON Actn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13139061	3R_13139061_SNP [dm3] 3R_17313339_SNP [dm6]	G	T	4.250e^-5	0.889	INTERGENIC
2R	14620448	2R_14620448_SNP [dm3] 2R_18732943_SNP [dm6]	T	A	4.349e^-5	0.889	INTRON Hs3st-A
2R	15843992	2R_15843992_SNP [dm3] 2R_19956487_SNP [dm6]	G	T	4.358e^-5	0.889	NON_SYNONYMOUS_CODING CG44623
3L	12446783	3L_12446783_SNP [dm3] 3L_12453683_SNP [dm6]	C	A	4.378e^-5	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_Kr
2R	13772991	2R_13772991_SNP [dm3] 2R_17885486_SNP [dm6]	C	T	4.382e^-5	0.889	INTRON Elk
2L	12527947	2L_12527947_SNP [dm3] 2L_12527947_SNP [dm6]	C	T	4.387e^-5	0.889	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15844090	2R_15844090_SNP [dm3] 2R_19956585_SNP [dm6]	T	A	4.416e^-5	0.889	SPLICE_SITE_REGION CG44623 INTRON CG44623
3L	2644981	3L_2644981_SNP [dm3] 3L_2644981_SNP [dm6]	A	T	4.520e^-5	0.889	UPSTREAM CG1143 INTERGENIC
3L	8745109	3L_8745109_SNP [dm3] 3L_8752009_SNP [dm6]	A	G	4.742e^-5	0.889	UPSTREAM CR44527 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	21600286	3L_21600286_INS [dm3] 3L_21607186_INS [dm6]	C	CACCTATGTTC...	4.750e^-5	0.889	UPSTREAM TfAP-2 INTRON TfAP-2
2R	11582501	2R_11582501_SNP [dm3] 2R_15694996_SNP [dm6]	G	C	4.840e^-5	0.889	SYNONYMOUS_CODING CG33460 UPSTREAM CG33461
3L	12446726	3L_12446726_SNP [dm3] 3L_12453626_SNP [dm6]	A	C	4.842e^-5	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_Kr
3R	8409015	3R_8409015_SNP [dm3] 3R_12583293_SNP [dm6]	T	G	4.860e^-5	0.889	INTRON Octbeta2R
3L	781261	3L_781261_SNP [dm3] 3L_781261_SNP [dm6]	G	T	4.932e^-5	0.889	INTERGENIC
X	18730960	X_18730960_SNP [dm3] X_18836927_SNP [dm6]	A	T	4.971e^-5	0.889	INTRON Pvf1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	4950454	2R_4950454_SNP [dm3] 2R_9062949_SNP [dm6]	G	A	5.056e^-5	0.889	INTRON ana	regulatory region REDfly_CRMs
X	5603582	X_5603582_SNP [dm3] X_5709549_SNP [dm6]	G	A	5.065e^-5	0.889	SYNONYMOUS_CODING CG33080 DOWNSTREAM CG4096	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	4938644	3R_4938644_SNP [dm3] 3R_9112922_SNP [dm6]	C	A	5.155e^-5	0.889	INTRON pum
3L	14816333	3L_14816333_SNP [dm3] 3L_14823233_SNP [dm6]	G	A	5.190e^-5	0.889	INTRON CG17839
X	16098245	X_16098245_SNP [dm3] X_16204212_SNP [dm6]	G	C	5.193e^-5	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	16983394	3L_16983394_SNP [dm3] 3L_16990294_SNP [dm6]	C	A	5.226e^-5	0.889	INTRON Exn
2R	14620466	2R_14620466_SNP [dm3] 2R_18732961_SNP [dm6]	C	T	5.227e^-5	0.889	INTRON Hs3st-A
2L	11686631	2L_11686631_DEL [dm3] 2L_11686631_DEL [dm6]	ATTACAGGTAATA...	T	5.302e^-5	0.889	INTERGENIC
2R	13237688	2R_13237688_SNP [dm3] 2R_17350183_SNP [dm6]	T	C	5.362e^-5	0.889	INTRON mbl
2L	7451999	2L_7451999_SNP [dm3] 2L_7451999_SNP [dm6]	G	A	5.415e^-5	0.889	UPSTREAM santa-maria DOWNSTREAM Gr28a INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
2L	11686615	2L_11686615_SNP [dm3] 2L_11686615_SNP [dm6]	A	G	5.419e^-5	0.889	INTERGENIC
X	19871890	X_19871890_SNP [dm3] X_19977857_SNP [dm6]	C	T	5.445e^-5	0.889	INTERGENIC
3R	4341488	3R_4341488_SNP [dm3] 3R_8515766_SNP [dm6]	G	A	5.458e^-5	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	5087274	3R_5087274_SNP [dm3] 3R_9261552_SNP [dm6]	C	A	5.537e^-5	0.889	INTRON VhaM8.9	TF binding site mE1_TFBS_HSA
2R	12116819	2R_12116819_SNP [dm3] 2R_16229314_SNP [dm6]	A	G	5.561e^-5	0.889	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10694292	3L_10694292_SNP [dm3] 3L_10701192_SNP [dm6]	G	C	5.585e^-5	0.889	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	4346178	3R_4346178_SNP [dm3] 3R_8520456_SNP [dm6]	T	C	5.628e^-5	0.889	SYNONYMOUS_CODING CG11737	TF binding site mE1_TFBS_chinmo
3L	3835090	3L_3835090_INS [dm3] 3L_3835090_INS [dm6]	A	AATATAACTATC...	5.668e^-5	0.889	INTRON enc
3L	781279	3L_781279_SNP [dm3] 3L_781279_SNP [dm6]	G	A	5.699e^-5	0.889	INTERGENIC
2L	19802421	2L_19802421_SNP [dm3] 2L_19802421_SNP [dm6]	A	C	5.755e^-5	0.889	INTRON sick
3R	25759599	3R_25759599_SNP [dm3] 3R_29933877_SNP [dm6]	C	T	5.833e^-5	0.889	NON_SYNONYMOUS_CODING CG42557 START_GAINED CG42558 UTR_5_PRIME CG42558 UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11686606	2L_11686606_SNP [dm3] 2L_11686606_SNP [dm6]	A	T	5.853e^-5	0.889	INTERGENIC
3L	14832930	3L_14832930_DEL [dm3] 3L_14839830_DEL [dm6]	AATAA	A	5.909e^-5	0.889	INTRON CG17839
2R	11813827	2R_11813827_SNP [dm3] 2R_15926322_SNP [dm6]	G	A	5.944e^-5	0.889	NON_SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad
3L	3090995	3L_3090995_SNP [dm3] 3L_3090995_SNP [dm6]	C	T	6.097e^-5	0.889	UTR_3_PRIME Cht7 DOWNSTREAM CG11486 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	13469687	3R_13469687_SNP [dm3] 3R_17643965_SNP [dm6]	C	A	6.164e^-5	0.889	UPSTREAM CG43175 INTRON CG43175
2L	16376688	2L_16376688_SNP [dm3] 2L_16376688_SNP [dm6]	A	T	6.174e^-5	0.889	INTERGENIC
3R	5963561	3R_5963561_SNP [dm3] 3R_10137839_SNP [dm6]	T	C	6.181e^-5	0.889	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	12507935	3L_12507935_SNP [dm3] 3L_12514835_SNP [dm6]	T	C	6.198e^-5	0.889	UPSTREAM tral & 1 other EXON CR45168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
2R	19007092	2R_19007092_SNP [dm3] 2R_23119569_SNP [dm6]	G	T	6.310e^-5	0.889	INTERGENIC
2L	19794789	2L_19794789_SNP [dm3] 2L_19794789_SNP [dm6]	T	A	6.351e^-5	0.889	SYNONYMOUS_CODING fs_2_ltoPP43	TF binding site BDTNP1_TFBS_dl
2L	8619047	2L_8619047_SNP [dm3] 2L_8619047_SNP [dm6]	C	T	6.467e^-5	0.889	UPSTREAM tRNA:CR31602 INTRON Sema-1a
3L	8420167	3L_8420167_SNP [dm3] 3L_8427067_SNP [dm6]	A	G	6.497e^-5	0.889	INTRON Cbl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16624012	2R_16624012_SNP [dm3] 2R_20736507_SNP [dm6]	C	T	6.567e^-5	0.889	INTRON dpr
2R	10444399	2R_10444399_SNP [dm3] 2R_14556894_SNP [dm6]	T	G	6.597e^-5	0.889	INTRON ttv
3R	11459568	3R_11459568_SNP [dm3] 3R_15633846_SNP [dm6]	G	T	6.603e^-5	0.889	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	4152861	3L_4152861_SNP [dm3] 3L_4152861_SNP [dm6]	G	A	6.631e^-5	0.889	DOWNSTREAM CG1299 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19802428	2L_19802428_SNP [dm3] 2L_19802428_SNP [dm6]	A	G	6.646e^-5	0.889	INTRON sick
2R	3655769	2R_3655769_SNP [dm3] 2R_7768264_SNP [dm6]	A	C	6.742e^-5	0.889	INTRON CG30497 & 1 other
2R	8383716	2R_8383716_SNP [dm3] 2R_12496211_SNP [dm6]	C	T	6.770e^-5	0.889	INTRON fdl & 1 other
2R	8383732	2R_8383732_SNP [dm3] 2R_12496227_SNP [dm6]	A	T	6.770e^-5	0.889	INTRON fdl & 1 other
2L	16376690	2L_16376690_DEL [dm3] 2L_16376690_DEL [dm6]	AATATATAT	A	6.999e^-5	0.889	INTERGENIC
2L	7452226	2L_7452226_SNP [dm3] 2L_7452226_SNP [dm6]	C	T	7.004e^-5	0.889	UPSTREAM santa-maria DOWNSTREAM Gr28a INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3R	3413588	3R_3413588_SNP [dm3] 3R_7587866_SNP [dm6]	A	G	7.050e^-5	0.889	INTRON CG34127	TF binding site mE1_TFBS_inv
X	8679406	X_8679406_DEL [dm3] X_8785373_DEL [dm6]	AGTGG	CTC	7.051e^-5	0.889	UPSTREAM Lim1 INTRON Lim1	TF binding site BDTNP1_TFBS_dl
3L	16983298	3L_16983298_INS [dm3] 3L_16990198_INS [dm6]	A	AG	7.058e^-5	0.889	INTRON Exn
3L	11919322	3L_11919322_SNP [dm3] 3L_11926222_SNP [dm6]	C	T	7.131e^-5	0.889	INTRON CG44837	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1243265	3L_1243265_SNP [dm3] 3L_1243265_SNP [dm6]	C	T	7.167e^-5	0.889	SYNONYMOUS_CODING Klp61F
2R	20251831	2R_20251831_SNP [dm3] 2R_24364308_SNP [dm6]	G	T	7.187e^-5	0.889	INTRON bs & 1 other
2L	12890063	2L_12890063_SNP [dm3] 2L_12890063_SNP [dm6]	T	C	7.192e^-5	0.889	INTERGENIC
3L	412023	3L_412023_SNP [dm3] 3L_412023_SNP [dm6]	G	T	7.261e^-5	0.889	INTERGENIC
3L	14834277	3L_14834277_SNP [dm3] 3L_14841177_SNP [dm6]	T	A	7.364e^-5	0.889	INTRON CG17839
3R	9576086	3R_9576086_SNP [dm3] 3R_13750364_SNP [dm6]	C	T	7.407e^-5	0.889	SYNONYMOUS_CODING CG34383	TF binding site mE1_TFBS_cad
3R	8390929	3R_8390929_SNP [dm3] 3R_12565207_SNP [dm6]	T	C	7.417e^-5	0.889	INTRON Octbeta2R
3L	415143	3L_415143_DEL [dm3] 3L_415143_DEL [dm6]	AA	A	7.441e^-5	0.889	INTERGENIC
2R	18364054	2R_18364054_SNP [dm3] 2R_22476549_SNP [dm6]	G	A	7.495e^-5	0.889	NON_SYNONYMOUS_CODING CG45063 UPSTREAM CG45062	TF binding site mE1_TFBS_cad
X	19239433	X_19239433_SNP [dm3] X_19345400_SNP [dm6]	T	A	7.534e^-5	0.889	INTRON nAChRalpha7
X	8739266	X_8739266_SNP [dm3] X_8845233_SNP [dm6]	A	C	7.644e^-5	0.889	INTRON CG12075
3R	9304964	3R_9304964_SNP [dm3] 3R_13479242_SNP [dm6]	A	T	7.650e^-5	0.889	DOWNSTREAM CR45589 INTERGENIC
3L	4379433	3L_4379433_SNP [dm3] 3L_4379433_SNP [dm6]	G	C	7.692e^-5	0.889	UTR_5_PRIME DopEcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	10122680	3R_10122680_SNP [dm3] 3R_14296958_SNP [dm6]	T	A	7.703e^-5	0.889	INTRON CG12207
2L	378373	2L_378373_SNP [dm3] 2L_378373_SNP [dm6]	A	T	7.719e^-5	0.889	UTR_5_PRIME al	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2R	13415564	2R_13415564_SNP [dm3] 2R_17528059_SNP [dm6]	G	A	7.721e^-5	0.889	SYNONYMOUS_CODING Patronin
3L	1237987	3L_1237987_SNP [dm3] 3L_1237987_SNP [dm6]	C	T	7.748e^-5	0.889	SYNONYMOUS_CODING CG9192 INTRON CG9194	TF binding site mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
3L	781289	3L_781289_SNP [dm3] 3L_781289_SNP [dm6]	T	C	7.758e^-5	0.889	INTERGENIC
X	4764291	X_4764291_SNP [dm3] X_4870258_SNP [dm6]	T	C	7.774e^-5	0.889	INTRON CG42594
3L	21537802	3L_21537802_INS [dm3] 3L_21544702_INS [dm6]	G	GG	7.861e^-5	0.889	INTRON Wnk
X	21930162	X_21930162_SNP [dm3] X_22528326_SNP [dm6]	C	T	8.003e^-5	0.889	SYNONYMOUS_CODING CG17600
3R	4873189	3R_4873189_SNP [dm3] 3R_9047467_SNP [dm6]	A	T	8.039e^-5	0.889	UTR_5_PRIME Rel UPSTREAM Rel INTRON Nmdmc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	15844091	2R_15844091_SNP [dm3] 2R_19956586_SNP [dm6]	T	A	8.085e^-5	0.889	SPLICE_SITE_REGION CG44623 INTRON CG44623
2R	10444443	2R_10444443_SNP [dm3] 2R_14556938_SNP [dm6]	G	C	8.130e^-5	0.889	INTRON ttv
3L	2645067	3L_2645067_SNP [dm3] 3L_2645067_SNP [dm6]	C	T	8.134e^-5	0.889	UPSTREAM CG1143 INTERGENIC
3L	1604475	3L_1604475_SNP [dm3] 3L_1604475_SNP [dm6]	C	T	8.153e^-5	0.889	NON_SYNONYMOUS_CODING CG18170 UTR_5_PRIME CG33791 UPSTREAM CG33791
3L	11919332	3L_11919332_SNP [dm3] 3L_11926232_SNP [dm6]	A	G	8.254e^-5	0.889	INTRON CG44837	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	21555445	3L_21555445_SNP [dm3] 3L_21562345_SNP [dm6]	A	T	8.254e^-5	0.889	UPSTREAM CapaR INTERGENIC
3L	14834685	3L_14834685_SNP [dm3] 3L_14841585_SNP [dm6]	G	T	8.265e^-5	0.889	INTRON CG17839
3R	21276634	3R_21276634_SNP [dm3] 3R_25450912_SNP [dm6]	C	T	8.300e^-5	0.889	INTRON Fur1
3L	17715799	3L_17715799_SNP [dm3] 3L_17722699_SNP [dm6]	G	C	8.420e^-5	0.889	INTRON Ccn
3R	14885501	3R_14885501_SNP [dm3] 3R_19059779_SNP [dm6]	A	T	8.469e^-5	0.889	INTRON cdi	TF binding site BDTNP1_TFBS_dl
3L	14827396	3L_14827396_SNP [dm3] 3L_14834296_SNP [dm6]	G	A	8.486e^-5	0.889	INTRON CG17839
3R	25758849	3R_25758849_SNP [dm3] 3R_29933127_SNP [dm6]	T	A	8.523e^-5	0.889	UPSTREAM CG42557 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	8582894	3L_8582894_SNP [dm3] 3L_8589794_SNP [dm6]	G	C	8.527e^-5	0.889	UPSTREAM CG43078 INTRON CG43078
X	19871664	X_19871664_SNP [dm3] X_19977631_SNP [dm6]	C	G	8.533e^-5	0.889	INTERGENIC
2L	2922161	2L_2922161_SNP [dm3] 2L_2922161_SNP [dm6]	T	A	8.611e^-5	0.889	INTRON lilli
2L	8507658	2L_8507658_SNP [dm3] 2L_8507658_SNP [dm6]	G	C	8.643e^-5	0.889	UPSTREAM Dh31 INTERGENIC
3L	12507755	3L_12507755_SNP [dm3] 3L_12514655_SNP [dm6]	T	G	8.667e^-5	0.889	NON_SYNONYMOUS_CODING sti UPSTREAM tral EXON CR45168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	11727955	X_11727955_SNP [dm3] X_11833922_SNP [dm6]	A	G	8.684e^-5	0.889	UTR_3_PRIME rudhira DOWNSTREAM rudhira INTRON rudhira
2L	19250478	2L_19250478_SNP [dm3] 2L_19250478_SNP [dm6]	C	T	8.708e^-5	0.889	INTERGENIC
3L	14814972	3L_14814972_SNP [dm3] 3L_14821872_SNP [dm6]	A	T	8.715e^-5	0.889	INTRON CG17839
3L	391927	3L_391927_INS [dm3] 3L_391927_INS [dm6]	A	AATTGGAT	8.743e^-5	0.889	DOWNSTREAM CR45378 INTRON trh
2L	12030328	2L_12030328_DEL [dm3] 2L_12030328_DEL [dm6]	GCGG	G	8.813e^-5	0.889	INTRON dmGlut	TF binding site mE1_TFBS_cad
2L	19742727	2L_19742727_SNP [dm3] 2L_19742727_SNP [dm6]	C	T	8.882e^-5	0.889	UPSTREAM CR44906 DOWNSTREAM CG10631 INTERGENIC
3L	14828738	3L_14828738_SNP [dm3] 3L_14835638_SNP [dm6]	G	T	9.014e^-5	0.889	INTRON CG17839
3L	412168	3L_412168_SNP [dm3] 3L_412168_SNP [dm6]	G	A	9.056e^-5	0.889	INTERGENIC
2L	11686609	2L_11686609_SNP [dm3] 2L_11686609_SNP [dm6]	G	A	9.059e^-5	0.889	INTERGENIC
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	9.141e^-5	0.889	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
3L	1247248	3L_1247248_SNP [dm3] 3L_1247248_SNP [dm6]	G	A	9.190e^-5	0.889	SYNONYMOUS_CODING Psf1 UPSTREAM Sac1 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15844139	2R_15844139_SNP [dm3] 2R_19956634_SNP [dm6]	C	T	9.324e^-5	0.889	SYNONYMOUS_CODING CG44623
3L	11525398	3L_11525398_SNP [dm3] 3L_11532298_SNP [dm6]	C	T	9.427e^-5	0.889	INTRON Mob2
2R	15844033	2R_15844033_SNP [dm3] 2R_19956528_SNP [dm6]	T	G	9.441e^-5	0.889	SYNONYMOUS_CODING CG44623
3R	14090571	3R_14090571_SNP [dm3] 3R_18264849_SNP [dm6]	G	A	9.441e^-5	0.889	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	12510094	2R_12510094_SNP [dm3] 2R_16622589_SNP [dm6]	C	T	9.540e^-5	0.889	INTRON CG5065	TF binding site mE1_TFBS_cad
3L	10691472	3L_10691472_SNP [dm3] 3L_10698372_SNP [dm6]	T	A	9.556e^-5	0.889	INTERGENIC
3L	6055459	3L_6055459_SNP [dm3] 3L_6062359_SNP [dm6]	G	T	9.557e^-5	0.889	SYNONYMOUS_CODING CG10472 DOWNSTREAM CG6592	TF binding site mE1_TFBS_cad
3R	4108029	3R_4108029_SNP [dm3] 3R_8282307_SNP [dm6]	G	T	9.695e^-5	0.889	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	3377694	X_3377694_SNP [dm3] X_3483661_SNP [dm6]	G	A	9.738e^-5	0.889	SYNONYMOUS_CODING CG10802 DOWNSTREAM CG14270 INTRON CR44999	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	4426085	3L_4426085_SNP [dm3] 3L_4426085_SNP [dm6]	T	C	9.773e^-5	0.889	SYNONYMOUS_CODING CG15020
2R	11575711	2R_11575711_SNP [dm3] 2R_15688206_SNP [dm6]	G	T	9.778e^-5	0.889	NON_SYNONYMOUS_CODING Cep89 SPLICE_SITE_REGION Cep89 DOWNSTREAM Ranbp11	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9873577	3L_9873577_SNP [dm3] 3L_9880477_SNP [dm6]	T	C	9.883e^-5	0.889	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
2R	6383082	2R_6383082_SNP [dm3] 2R_10495577_SNP [dm6]	C	T	9.954e^-5	0.889	DOWNSTREAM lola INTRON lola
2L	4147959	2L_4147959_SNP [dm3] 2L_4147959_SNP [dm6]	C	A	9.966e^-5	0.889	INTERGENIC
2L	8507679	2L_8507679_SNP [dm3] 2L_8507679_SNP [dm6]	T	A	1.001e^-4	0.889	UPSTREAM Dh31 INTERGENIC
3R	3408993	3R_3408993_SNP [dm3] 3R_7583271_SNP [dm6]	A	G	1.002e^-4	0.889	INTRON CG34127
X	9699895	X_9699895_SNP [dm3] X_9805862_SNP [dm6]	C	G	1.005e^-4	0.889	INTRON CG32698
3R	3146231	3R_3146231_SNP [dm3] 3R_7320509_SNP [dm6]	T	A	1.011e^-4	0.889	INTERGENIC
3R	11272369	3R_11272369_SNP [dm3] 3R_15446647_SNP [dm6]	C	A	1.013e^-4	0.889	INTRON AdamTS-A	TF binding site mE1_TFBS_cad
2R	13415561	2R_13415561_SNP [dm3] 2R_17528056_SNP [dm6]	A	G	1.035e^-4	0.889	SYNONYMOUS_CODING Patronin
3R	14515011	3R_14515011_SNP [dm3] 3R_18689289_SNP [dm6]	G	A	1.041e^-4	0.889	NON_SYNONYMOUS_CODING Muc91C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15844029	2R_15844029_SNP [dm3] 2R_19956524_SNP [dm6]	T	C	1.056e^-4	0.889	NON_SYNONYMOUS_CODING CG44623
2L	19803809	2L_19803809_SNP [dm3] 2L_19803809_SNP [dm6]	C	T	1.072e^-4	0.889	INTRON sick
2L	8507668	2L_8507668_SNP [dm3] 2L_8507668_SNP [dm6]	G	C	1.081e^-4	0.889	UPSTREAM Dh31 INTERGENIC
X	8405317	X_8405317_SNP [dm3] X_8511284_SNP [dm6]	T	C	1.084e^-4	0.889	UTR_5_PRIME CG33181 INTRON CG33181	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	19743827	2L_19743827_SNP [dm3] 2L_19743827_SNP [dm6]	G	A	1.088e^-4	0.889	SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8638979	3R_8638979_SNP [dm3] 3R_12813257_SNP [dm6]	C	G	1.094e^-4	0.889	INTRON CG31345
2L	13226516	2L_13226516_SNP [dm3] 2L_13226516_SNP [dm6]	A	G	1.110e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	4091100	X_4091100_SNP [dm3] X_4197067_SNP [dm6]	G	C	1.111e^-4	0.889	INTRON Fas2
X	4091094	X_4091094_DEL [dm3] X_4197061_DEL [dm6]	AAA	A	1.114e^-4	0.889	INTRON Fas2
X	8403065	X_8403065_SNP [dm3] X_8509032_SNP [dm6]	T	G	1.126e^-4	0.889	UPSTREAM CG33181 INTRON CG33181
3R	13106773	3R_13106773_SNP [dm3] 3R_17281051_SNP [dm6]	T	C	1.132e^-4	0.889	INTERGENIC
3R	21582163	3R_21582163_SNP [dm3] 3R_25756441_SNP [dm6]	A	G	1.133e^-4	0.889	INTRON LpR1
2L	19236590	2L_19236590_SNP [dm3] 2L_19236590_SNP [dm6]	G	A	1.140e^-4	0.889	INTERGENIC
2L	15083917	2L_15083917_SNP [dm3] 2L_15083917_SNP [dm6]	A	T	1.140e^-4	0.889	INTRON CG15270
2R	13583465	2R_13583465_SNP [dm3] 2R_17695960_SNP [dm6]	G	A	1.140e^-4	0.889	UTR_3_PRIME rdgBbeta UPSTREAM swi2
X	5716480	X_5716480_SNP [dm3] X_5822447_SNP [dm6]	T	C	1.145e^-4	0.889	INTRON CG15765	TF binding site mE1_TFBS_chinmo
2R	5698142	2R_5698142_SNP [dm3] 2R_9810637_SNP [dm6]	G	A	1.146e^-4	0.889	DOWNSTREAM CG1648 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	9430498	2L_9430498_SNP [dm3] 2L_9430498_SNP [dm6]	T	A	1.152e^-4	0.889	UPSTREAM FucTB & 1 other INTRON FucTB
3R	26200988	3R_26200988_SNP [dm3] 3R_30375266_SNP [dm6]	T	C	1.168e^-4	0.889	INTERGENIC
2R	6139110	2R_6139110_SNP [dm3] 2R_10251605_SNP [dm6]	A	T	1.169e^-4	0.889	INTRON CG12913 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21388801	3R_21388801_SNP [dm3] 3R_25563079_SNP [dm6]	T	C	1.174e^-4	0.889	INTRON msi
2L	19760927	2L_19760927_SNP [dm3] 2L_19760927_SNP [dm6]	G	C	1.176e^-4	0.889	UTR_3_PRIME CG10463 DOWNSTREAM fbp
X	8678910	X_8678910_SNP [dm3] X_8784877_SNP [dm6]	G	A	1.179e^-4	0.889	INTRON Lim1
X	8678911	X_8678911_SNP [dm3] X_8784878_SNP [dm6]	C	A	1.179e^-4	0.889	INTRON Lim1
X	8678929	X_8678929_SNP [dm3] X_8784896_SNP [dm6]	A	C	1.179e^-4	0.889	INTRON Lim1
3R	14977420	3R_14977420_SNP [dm3] 3R_19151698_SNP [dm6]	C	A	1.181e^-4	0.889	INTRON CG5835
X	19239412	X_19239412_SNP [dm3] X_19345379_SNP [dm6]	A	T	1.182e^-4	0.889	INTRON nAChRalpha7
2R	9147438	2R_9147438_SNP [dm3] 2R_13259933_SNP [dm6]	G	A	1.194e^-4	0.889	UPSTREAM CG42319 INTERGENIC
3L	12134701	3L_12134701_SNP [dm3] 3L_12141601_SNP [dm6]	G	A	1.196e^-4	0.889	SYNONYMOUS_CODING RhoGAP68F
X	4091081	X_4091081_DEL [dm3] X_4197048_DEL [dm6]	TTT	T	1.202e^-4	0.889	INTRON Fas2
X	19873291	X_19873291_INS [dm3] X_19979258_INS [dm6]	T	TTGATGT	1.205e^-4	0.889	INTERGENIC
2R	19534754	2R_19534754_SNP [dm3] 2R_23647231_SNP [dm6]	C	T	1.209e^-4	0.889	INTRON retn	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	10293470	3L_10293470_SNP [dm3] 3L_10300370_SNP [dm6]	A	C	1.228e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11722638	3L_11722638_SNP [dm3] 3L_11729538_SNP [dm6]	G	A	1.236e^-4	0.889	SYNONYMOUS_CODING CG32088
3R	15486824	3R_15486824_SNP [dm3] 3R_19661102_SNP [dm6]	C	T	1.243e^-4	0.889	INTRON ort
3L	781267	3L_781267_SNP [dm3] 3L_781267_SNP [dm6]	G	A	1.243e^-4	0.889	INTERGENIC
3R	23645018	3R_23645018_SNP [dm3] 3R_27819296_SNP [dm6]	T	C	1.248e^-4	0.889	INTRON CG34353
3L	14834278	3L_14834278_SNP [dm3] 3L_14841178_SNP [dm6]	G	T	1.249e^-4	0.889	INTRON CG17839
X	8404253	X_8404253_SNP [dm3] X_8510220_SNP [dm6]	G	A	1.249e^-4	0.889	SPLICE_SITE_REGION CG33181 UTR_5_PRIME CG33181 INTRON CG33181	TF binding site BDTNP1_TFBS_dl
3R	3410745	3R_3410745_SNP [dm3] 3R_7585023_SNP [dm6]	C	G	1.260e^-4	0.889	INTRON CG34127
3L	23720164	3L_23720164_SNP [dm3] 3L_23727064_SNP [dm6]	G	A	1.261e^-4	0.889	SYNONYMOUS_CODING CG40298
3L	14065454	3L_14065454_SNP [dm3] 3L_14072354_SNP [dm6]	A	C	1.263e^-4	0.889	DOWNSTREAM CG32138 INTRON Pex1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	3408950	3R_3408950_SNP [dm3] 3R_7583228_SNP [dm6]	A	C	1.263e^-4	0.889	INTRON CG34127
2L	15090507	2L_15090507_SNP [dm3] 2L_15090507_SNP [dm6]	T	C	1.271e^-4	0.889	INTRON CG15270
2L	4148017	2L_4148017_SNP [dm3] 2L_4148017_SNP [dm6]	T	G	1.279e^-4	0.889	INTERGENIC
2R	7961237	2R_7961237_SNP [dm3] 2R_12073732_SNP [dm6]	G	A	1.279e^-4	0.889	INTRON CG8888
3L	19340045	3L_19340045_SNP [dm3] 3L_19346945_SNP [dm6]	T	A	1.280e^-4	0.889	INTRON CG32206	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15486798	3R_15486798_SNP [dm3] 3R_19661076_SNP [dm6]	T	C	1.280e^-4	0.889	INTRON ort
2L	1690893	2L_1690893_SNP [dm3] 2L_1690893_SNP [dm6]	C	T	1.283e^-4	0.889	INTRON chinmo
3L	1346361	3L_1346361_SNP [dm3] 3L_1346361_SNP [dm6]	G	T	1.283e^-4	0.889	SYNONYMOUS_CODING Ptp61F UTR_5_PRIME Ptp61F	TF binding site BDTNP1_TFBS_prd
2L	2721711	2L_2721711_SNP [dm3] 2L_2721711_SNP [dm6]	G	A	1.287e^-4	0.889	INTERGENIC
3L	7013586	3L_7013586_SNP [dm3] 3L_7020486_SNP [dm6]	T	A	1.292e^-4	0.889	INTRON Mp
3L	412160	3L_412160_INS [dm3] 3L_412160_INS [dm6]	A	AAATACACATA...	1.300e^-4	0.889	INTERGENIC
X	15135061	X_15135061_SNP [dm3] X_15241028_SNP [dm6]	G	C	1.301e^-4	0.889	INTERGENIC
2L	5717452	2L_5717452_SNP [dm3] 2L_5717452_SNP [dm6]	G	T	1.302e^-4	0.889	UPSTREAM CG14007 DOWNSTREAM CG11149 INTRON CG34011
X	8402755	X_8402755_SNP [dm3] X_8508722_SNP [dm6]	G	C	1.303e^-4	0.889	UPSTREAM CG33181 INTRON CG33181
3L	1247318	3L_1247318_SNP [dm3] 3L_1247318_SNP [dm6]	G	A	1.310e^-4	0.889	SYNONYMOUS_CODING Psf1 UPSTREAM Sac1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	1.310e^-4	0.889	EXON CR44950
3R	8388326	3R_8388326_SNP [dm3] 3R_12562604_SNP [dm6]	C	T	1.310e^-4	0.889	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
3R	5087199	3R_5087199_SNP [dm3] 3R_9261477_SNP [dm6]	A	G	1.313e^-4	0.889	INTRON VhaM8.9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8402895	X_8402895_DEL [dm3] X_8508862_DEL [dm6]	TGCG	T	1.322e^-4	0.889	UPSTREAM CG33181 INTRON CG33181
3R	8353659	3R_8353659_SNP [dm3] 3R_12527937_SNP [dm6]	C	A	1.324e^-4	0.889	NON_SYNONYMOUS_CODING Hug INTRON Octbeta3R
3L	14814978	3L_14814978_SNP [dm3] 3L_14821878_SNP [dm6]	A	G	1.325e^-4	0.889	INTRON CG17839
2L	8506498	2L_8506498_SNP [dm3] 2L_8506498_SNP [dm6]	A	T	1.331e^-4	0.889	INTRON Dh31
3L	781306	3L_781306_SNP [dm3] 3L_781306_SNP [dm6]	T	G	1.331e^-4	0.889	INTERGENIC
2R	4956241	2R_4956241_SNP [dm3] 2R_9068736_SNP [dm6]	T	G	1.338e^-4	0.889	UPSTREAM ana INTRON ana
3R	13570318	3R_13570318_SNP [dm3] 3R_17744596_SNP [dm6]	C	A	1.338e^-4	0.889	INTRON TyrRII	TF binding site mE1_TFBS_cad
2R	11573868	2R_11573868_SNP [dm3] 2R_15686363_SNP [dm6]	C	T	1.339e^-4	0.889	SYNONYMOUS_CODING Ranbp11 UPSTREAM CG30082	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
X	19871581	X_19871581_SNP [dm3] X_19977548_SNP [dm6]	T	G	1.344e^-4	0.889	INTERGENIC
3R	13483941	3R_13483941_SNP [dm3] 3R_17658219_SNP [dm6]	T	A	1.348e^-4	0.889	DOWNSTREAM tRNA:CR31575 INTRON CG14322
3L	10693458	3L_10693458_SNP [dm3] 3L_10700358_SNP [dm6]	A	C	1.350e^-4	0.889	INTERGENIC
3L	2644985	3L_2644985_SNP [dm3] 3L_2644985_SNP [dm6]	T	A	1.358e^-4	0.889	UPSTREAM CG1143 INTERGENIC
3R	24499243	3R_24499243_SNP [dm3] 3R_28673521_SNP [dm6]	A	T	1.366e^-4	0.889	INTERGENIC
2R	15834778	2R_15834778_SNP [dm3] 2R_19947273_SNP [dm6]	G	T	1.376e^-4	0.889	UPSTREAM CG42691 INTRON CG30447
2L	15084737	2L_15084737_SNP [dm3] 2L_15084737_SNP [dm6]	G	C	1.389e^-4	0.889	INTRON CG15270
3R	21368241	3R_21368241_SNP [dm3] 3R_25542519_SNP [dm6]	G	A	1.393e^-4	0.889	INTRON msi
3L	1248224	3L_1248224_SNP [dm3] 3L_1248224_SNP [dm6]	C	T	1.396e^-4	0.889	UPSTREAM Psf1 INTRON Sac1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14814995	3L_14814995_SNP [dm3] 3L_14821895_SNP [dm6]	G	T	1.408e^-4	0.889	INTRON CG17839
3L	11408920	3L_11408920_INS [dm3] 3L_11415820_INS [dm6]	G	GATGGGT	1.411e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	12541408	2L_12541408_INS [dm3] 2L_12541408_INS [dm6]	C	CTTCC	1.419e^-4	0.889	UPSTREAM bun INTRON bun
3R	9573889	3R_9573889_SNP [dm3] 3R_13748167_SNP [dm6]	T	A	1.422e^-4	0.889	INTRON CG34383	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6100199	3L_6100199_SNP [dm3] 3L_6107099_SNP [dm6]	C	T	1.429e^-4	0.889	INTRON Ets65A	TF binding site mE1_TFBS_cad
3L	8547757	3L_8547757_SNP [dm3] 3L_8554657_SNP [dm6]	A	T	1.444e^-4	0.889	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20317487	2R_20317487_SNP [dm3] 2R_24429964_SNP [dm6]	G	A	1.455e^-4	0.889	INTRON CG15873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9147482	2R_9147482_SNP [dm3] 2R_13259977_SNP [dm6]	A	G	1.464e^-4	0.889	UPSTREAM CG42319 INTERGENIC
X	4206654	X_4206654_SNP [dm3] X_4312621_SNP [dm6]	G	A	1.476e^-4	0.889	UPSTREAM CG15579 INTRON CR44957
X	8402864	X_8402864_SNP [dm3] X_8508831_SNP [dm6]	C	G	1.480e^-4	0.889	UPSTREAM CG33181 INTRON CG33181
2L	5518881	2L_5518881_SNP [dm3] 2L_5518881_SNP [dm6]	G	A	1.481e^-4	0.889	UTR_3_PRIME CG14020 DOWNSTREAM CG7382	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3R	16207581	3R_16207581_SNP [dm3] 3R_20381859_SNP [dm6]	C	T	1.490e^-4	0.889	INTRON Gfrl
3L	14816170	3L_14816170_SNP [dm3] 3L_14823070_SNP [dm6]	A	T	1.502e^-4	0.889	INTRON CG17839
3L	11791042	3L_11791042_SNP [dm3] 3L_11797942_SNP [dm6]	A	G	1.503e^-4	0.889	SYNONYMOUS_CODING Klp68D	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	21531711	3L_21531711_SNP [dm3] 3L_21538611_SNP [dm6]	G	A	1.508e^-4	0.889	DOWNSTREAM CoVIII & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med
3L	21559727	3L_21559727_SNP [dm3] 3L_21566627_SNP [dm6]	T	C	1.508e^-4	0.889	INTRON CG7634	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13332053	X_13332053_SNP [dm3] X_13438020_SNP [dm6]	C	A	1.509e^-4	0.889	INTERGENIC
2R	3977446	2R_3977446_SNP [dm3] 2R_8089941_SNP [dm6]	C	T	1.518e^-4	0.889	SYNONYMOUS_CODING sut3 DOWNSTREAM sut2	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	9873289	3L_9873289_SNP [dm3] 3L_9880189_SNP [dm6]	C	A	1.525e^-4	0.889	INTRON CG34382	TF binding site mE1_TFBS_chinmo
3L	14810012	3L_14810012_SNP [dm3] 3L_14816912_SNP [dm6]	G	A	1.526e^-4	0.889	INTRON CG17839
2R	6313909	2R_6313909_INS [dm3] 2R_10426404_INS [dm6]	A	AAA	1.533e^-4	0.889	DOWNSTREAM Prx2540-1 & 1 other INTERGENIC	transposable element FlyBase
3R	21388780	3R_21388780_SNP [dm3] 3R_25563058_SNP [dm6]	C	T	1.537e^-4	0.889	INTRON msi
2L	15077905	2L_15077905_SNP [dm3] 2L_15077905_SNP [dm6]	T	C	1.543e^-4	0.889	INTRON CG15270
X	3376190	X_3376190_SNP [dm3] X_3482157_SNP [dm6]	A	G	1.547e^-4	0.889	UTR_5_PRIME CG10804 UPSTREAM CG10802 INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	8433088	X_8433088_SNP [dm3] X_8539055_SNP [dm6]	G	T	1.561e^-4	0.889	INTRON Nrg
X	3376778	X_3376778_SNP [dm3] X_3482745_SNP [dm6]	C	T	1.566e^-4	0.889	UPSTREAM CG10802 & 1 other INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	781299	3L_781299_SNP [dm3] 3L_781299_SNP [dm6]	A	T	1.570e^-4	0.889	INTERGENIC
X	20561606	X_20561606_SNP [dm3] X_20690579_SNP [dm6]	C	T	1.574e^-4	0.889	UPSTREAM run EXON CR45610	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	8405334	X_8405334_SNP [dm3] X_8511301_SNP [dm6]	G	A	1.580e^-4	0.889	UTR_5_PRIME CG33181 INTRON CG33181	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	5085332	3R_5085332_SNP [dm3] 3R_9259610_SNP [dm6]	C	A	1.586e^-4	0.889	INTRON CG8436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	10581745	2R_10581745_SNP [dm3] 2R_14694240_SNP [dm6]	A	G	1.587e^-4	0.889	INTRON mspo
2R	9631185	2R_9631185_SNP [dm3] 2R_13743680_SNP [dm6]	A	G	1.612e^-4	0.889	INTRON fas
3R	9571777	3R_9571777_SNP [dm3] 3R_13746055_SNP [dm6]	A	C	1.614e^-4	0.889	SYNONYMOUS_CODING CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4397595	2L_4397595_SNP [dm3] 2L_4397595_SNP [dm6]	T	C	1.619e^-4	0.889	SYNONYMOUS_CODING l_2_k05819	TF binding site mE1_TFBS_HSA
3L	21499495	3L_21499495_SNP [dm3] 3L_21506395_SNP [dm6]	A	G	1.620e^-4	0.889	INTRON Glg1	TF binding site mE1_TFBS_chinmo
3L	21502737	3L_21502737_SNP [dm3] 3L_21509637_SNP [dm6]	A	G	1.620e^-4	0.889	UPSTREAM M6 INTRON M6	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	21516847	3L_21516847_SNP [dm3] 3L_21523747_SNP [dm6]	T	C	1.620e^-4	0.889	UTR_5_PRIME CG7611 INTRON CG7611	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	16553993	2L_16553993_SNP [dm3] 2L_16553993_SNP [dm6]	G	C	1.621e^-4	0.889	INTRON CG42389
2L	4105528	2L_4105528_SNP [dm3] 2L_4105528_SNP [dm6]	G	A	1.632e^-4	0.889	INTRON ed
X	19871357	X_19871357_SNP [dm3] X_19977324_SNP [dm6]	C	A	1.635e^-4	0.889	INTERGENIC
3R	14660016	3R_14660016_SNP [dm3] 3R_18834294_SNP [dm6]	G	A	1.638e^-4	0.889	INTRON CG18208
3R	21652722	3R_21652722_SNP [dm3] 3R_25827000_SNP [dm6]	C	G	1.643e^-4	0.889	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	21528112	3L_21528112_SNP [dm3] 3L_21535012_SNP [dm6]	T	C	1.646e^-4	0.889	INTRON ppk5	TF binding site mE1_TFBS_inv
2L	3401943	2L_3401943_SNP [dm3] 2L_3401943_SNP [dm6]	T	C	1.647e^-4	0.889	INTERGENIC
3R	22518319	3R_22518319_SNP [dm3] 3R_26692597_SNP [dm6]	C	T	1.659e^-4	0.889	UTR_3_PRIME TwdlQ	TF binding site mE1_TFBS_cad
2L	19765108	2L_19765108_DEL [dm3] 2L_19765108_DEL [dm6]	CG	A	1.665e^-4	0.889	UPSTREAM fbp DOWNSTREAM bsh INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	11919346	3L_11919346_SNP [dm3] 3L_11926246_SNP [dm6]	A	G	1.671e^-4	0.889	INTRON CG44837	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	3488284	3R_3488284_SNP [dm3] 3R_7662562_SNP [dm6]	A	G	1.671e^-4	0.889	UTR_5_PRIME Nlg1
X	20262267	X_20262267_SNP [dm3] X_20391240_SNP [dm6]	A	G	1.674e^-4	0.889	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11722674	3L_11722674_SNP [dm3] 3L_11729574_SNP [dm6]	T	C	1.676e^-4	0.889	SYNONYMOUS_CODING CG32088
2L	4028989	2L_4028989_SNP [dm3] 2L_4028989_SNP [dm6]	T	G	1.677e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	12730530	2R_12730530_SNP [dm3] 2R_16843025_SNP [dm6]	T	G	1.688e^-4	0.889	DOWNSTREAM Ugt37c1 INTERGENIC
3R	13108587	3R_13108587_SNP [dm3] 3R_17282865_SNP [dm6]	A	C	1.691e^-4	0.889	UPSTREAM CG31418 INTERGENIC
X	3377141	X_3377141_SNP [dm3] X_3483108_SNP [dm6]	G	C	1.694e^-4	0.889	UPSTREAM CG10804 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	4164058	3L_4164058_SNP [dm3] 3L_4164058_SNP [dm6]	G	A	1.696e^-4	0.889	SYNONYMOUS_CODING mas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12836424	3L_12836424_SNP [dm3] 3L_12843324_SNP [dm6]	T	G	1.700e^-4	0.889	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2645081	3L_2645081_SNP [dm3] 3L_2645081_SNP [dm6]	A	G	1.700e^-4	0.889	UPSTREAM CG1143 INTERGENIC
3L	10293155	3L_10293155_SNP [dm3] 3L_10300055_SNP [dm6]	A	G	1.704e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	12415207	2L_12415207_SNP [dm3] 2L_12415207_SNP [dm6]	A	G	1.714e^-4	0.889	INTRON vir-1
X	3377134	X_3377134_SNP [dm3] X_3483101_SNP [dm6]	G	T	1.715e^-4	0.889	UPSTREAM CG10804 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	16623979	2R_16623979_SNP [dm3] 2R_20736474_SNP [dm6]	G	A	1.727e^-4	0.889	INTRON dpr
3L	21634122	3L_21634122_SNP [dm3] 3L_21641022_SNP [dm6]	C	A	1.727e^-4	0.889	UTR_5_PRIME Atox1 DOWNSTREAM CG32445	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
3L	21634123	3L_21634123_SNP [dm3] 3L_21641023_SNP [dm6]	C	A	1.727e^-4	0.889	UTR_5_PRIME Atox1 DOWNSTREAM CG32445	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
3R	20621725	3R_20621725_SNP [dm3] 3R_24796003_SNP [dm6]	A	C	1.732e^-4	0.889	INTRON Ets96B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22435414	3R_22435414_SNP [dm3] 3R_26609692_SNP [dm6]	G	T	1.736e^-4	0.889	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	8349902	3R_8349902_SNP [dm3] 3R_12524180_SNP [dm6]	A	T	1.739e^-4	0.889	INTRON Octbeta3R
2R	11823073	2R_11823073_SNP [dm3] 2R_15935568_SNP [dm6]	A	C	1.741e^-4	0.889	NON_SYNONYMOUS_CODING CG8297 UPSTREAM Iap2 DOWNSTREAM Mlf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4545922	3L_4545922_SNP [dm3] 3L_4545922_SNP [dm6]	G	A	1.742e^-4	0.889	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	21930168	X_21930168_SNP [dm3] X_22528332_SNP [dm6]	T	G	1.744e^-4	0.889	SYNONYMOUS_CODING CG17600
2L	19733007	2L_19733007_SNP [dm3] 2L_19733007_SNP [dm6]	C	A	1.748e^-4	0.889	SYNONYMOUS_CODING CG10462 DOWNSTREAM Lar
3L	11722133	3L_11722133_SNP [dm3] 3L_11729033_SNP [dm6]	C	T	1.750e^-4	0.889	SPLICE_SITE_REGION CG32088 DOWNSTREAM Bmcp INTRON CG32088
2L	5511194	2L_5511194_SNP [dm3] 2L_5511194_SNP [dm6]	A	C	1.754e^-4	0.889	INTERGENIC
2R	19024849	2R_19024849_SNP [dm3] 2R_23137326_SNP [dm6]	T	G	1.760e^-4	0.889	INTERGENIC
3L	14828427	3L_14828427_SNP [dm3] 3L_14835327_SNP [dm6]	T	G	1.768e^-4	0.889	INTRON CG17839
3L	3025741	3L_3025741_SNP [dm3] 3L_3025741_SNP [dm6]	C	T	1.771e^-4	0.889	SYNONYMOUS_CODING aly	TF binding site mE1_TFBS_h
2L	7337324	2L_7337324_SNP [dm3] 2L_7337324_SNP [dm6]	C	T	1.776e^-4	0.889	INTRON Wnt6
2L	19804790	2L_19804790_SNP [dm3] 2L_19804790_SNP [dm6]	C	G	1.777e^-4	0.889	INTRON sick
2L	7343130	2L_7343130_SNP [dm3] 2L_7343130_SNP [dm6]	G	T	1.789e^-4	0.889	INTRON Wnt6
2L	12078979	2L_12078979_SNP [dm3] 2L_12078979_SNP [dm6]	G	T	1.803e^-4	0.889	UPSTREAM CR44591 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2R	17260591	2R_17260591_SNP [dm3] 2R_21373086_SNP [dm6]	C	G	1.806e^-4	0.889	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19802424	2L_19802424_SNP [dm3] 2L_19802424_SNP [dm6]	A	T	1.806e^-4	0.889	INTRON sick
2L	12428484	2L_12428484_SNP [dm3] 2L_12428484_SNP [dm6]	T	G	1.809e^-4	0.889	SYNONYMOUS_CODING CG6388 UPSTREAM CG5446	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	16184500	3R_16184500_SNP [dm3] 3R_20358778_SNP [dm6]	T	C	1.819e^-4	0.889	UPSTREAM CR45023 INTERGENIC
2R	19317545	2R_19317545_SNP [dm3] 2R_23430022_SNP [dm6]	G	T	1.823e^-4	0.889	INTRON CG9815
2L	13881630	2L_13881630_SNP [dm3] 2L_13881630_SNP [dm6]	A	G	1.825e^-4	0.889	INTRON CenG1A
2R	19314884	2R_19314884_SNP [dm3] 2R_23427361_SNP [dm6]	C	T	1.828e^-4	0.889	INTRON CG9815	TF binding site BDTNP1_TFBS_dl
X	13137037	X_13137037_SNP [dm3] X_13243004_SNP [dm6]	C	T	1.831e^-4	0.889	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	4512888	2L_4512888_SNP [dm3] 2L_4512888_SNP [dm6]	G	A	1.833e^-4	0.889	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21483362	3L_21483362_SNP [dm3] 3L_21490262_SNP [dm6]	C	T	1.837e^-4	0.889	INTRON Neu2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21600167	3L_21600167_SNP [dm3] 3L_21607067_SNP [dm6]	G	A	1.841e^-4	0.889	INTRON TfAP-2
2R	6863673	2R_6863673_SNP [dm3] 2R_10976168_SNP [dm6]	C	T	1.842e^-4	0.889	INTERGENIC
2L	19788624	2L_19788624_SNP [dm3] 2L_19788624_SNP [dm6]	A	T	1.848e^-4	0.889	INTRON CdGAPr
2R	13950559	2R_13950559_SNP [dm3] 2R_18063054_SNP [dm6]	A	T	1.848e^-4	0.889	INTRON CG34386
3R	15154928	3R_15154928_SNP [dm3] 3R_19329206_SNP [dm6]	C	T	1.853e^-4	0.889	UPSTREAM CR43258 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	4147795	2L_4147795_SNP [dm3] 2L_4147795_SNP [dm6]	G	C	1.856e^-4	0.889	INTERGENIC
2R	15844103	2R_15844103_SNP [dm3] 2R_19956598_SNP [dm6]	T	C	1.865e^-4	0.889	SYNONYMOUS_CODING CG44623
2R	5698208	2R_5698208_SNP [dm3] 2R_9810703_SNP [dm6]	T	A	1.882e^-4	0.889	DOWNSTREAM CG1648 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	1153771	3L_1153771_SNP [dm3] 3L_1153771_SNP [dm6]	G	C	1.889e^-4	0.889	INTRON bab2	TF binding site mE1_TFBS_cad
2R	13745550	2R_13745550_SNP [dm3] 2R_17858045_SNP [dm6]	A	G	1.890e^-4	0.889	INTRON olf186-F
2R	12730237	2R_12730237_SNP [dm3] 2R_16842732_SNP [dm6]	A	C	1.893e^-4	0.889	DOWNSTREAM Ugt37c1 INTERGENIC
3R	26318780	3R_26318780_SNP [dm3] 3R_30493058_SNP [dm6]	C	G	1.894e^-4	0.889	SYNONYMOUS_CODING PH4alphaMP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	21487717	3L_21487717_SNP [dm3] 3L_21494617_SNP [dm6]	T	C	1.897e^-4	0.889	NON_SYNONYMOUS_CODING Hr78 DOWNSTREAM CG7519
2L	21998906	2L_21998906_SNP [dm3] 2L_21998906_SNP [dm6]	C	A	1.906e^-4	0.889	DOWNSTREAM CR44916 INTERGENIC	transposable element FlyBase
2L	9428337	2L_9428337_SNP [dm3] 2L_9428337_SNP [dm6]	G	A	1.910e^-4	0.889	SYNONYMOUS_CODING CG42847 DOWNSTREAM FucTB & 1 other
2L	11219801	2L_11219801_SNP [dm3] 2L_11219801_SNP [dm6]	T	A	1.912e^-4	0.889	INTRON ab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	7156753	3L_7156753_SNP [dm3] 3L_7163653_SNP [dm6]	G	A	1.916e^-4	0.889	INTRON Dscam2
3L	7156769	3L_7156769_SNP [dm3] 3L_7163669_SNP [dm6]	G	A	1.916e^-4	0.889	INTRON Dscam2
X	3377607	X_3377607_SNP [dm3] X_3483574_SNP [dm6]	C	A	1.919e^-4	0.889	SYNONYMOUS_CODING CG10802 INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	9501642	2L_9501642_SNP [dm3] 2L_9501642_SNP [dm6]	G	C	1.921e^-4	0.889	INTRON CG33298
2R	18517227	2R_18517227_INS [dm3] 2R_22629722_INS [dm6]	C	CC	1.926e^-4	0.889	INTRON CG33143	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	21491287	3L_21491287_SNP [dm3] 3L_21498187_SNP [dm6]	A	G	1.929e^-4	0.889	UTR_3_PRIME Glg1 UPSTREAM Hr78 INTRON CR43933	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
X	8156039	X_8156039_SNP [dm3] X_8262006_SNP [dm6]	A	T	1.933e^-4	0.889	INTRON CG1632
3L	12446735	3L_12446735_INS [dm3] 3L_12453635_INS [dm6]	T	TGTT	1.948e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_Kr
3L	9980938	3L_9980938_SNP [dm3] 3L_9987838_SNP [dm6]	G	T	1.950e^-4	0.889	INTRON dpr6
3L	9693521	3L_9693521_SNP [dm3] 3L_9700421_SNP [dm6]	G	A	1.951e^-4	0.889	UTR_3_PRIME UbcD4 DOWNSTREAM CG6761 & 1 other
X	6747096	X_6747096_INS [dm3] X_6853063_INS [dm6]	T	TAAA	1.966e^-4	0.889	UPSTREAM CG14434 INTRON CG14434	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7961258	2R_7961258_SNP [dm3] 2R_12073753_SNP [dm6]	A	G	1.971e^-4	0.889	INTRON CG8888
3R	16207723	3R_16207723_SNP [dm3] 3R_20382001_SNP [dm6]	A	G	1.981e^-4	0.889	SYNONYMOUS_CODING Gfrl
3L	396393	3L_396393_SNP [dm3] 3L_396393_SNP [dm6]	T	C	2.001e^-4	0.889	INTERGENIC
3R	8390986	3R_8390986_SNP [dm3] 3R_12565264_SNP [dm6]	C	T	2.002e^-4	0.889	INTRON Octbeta2R
2R	11570361	2R_11570361_SNP [dm3] 2R_15682856_SNP [dm6]	G	A	2.002e^-4	0.889	NON_SYNONYMOUS_CODING Ranbp11 DOWNSTREAM CG30091 EXON CR43429	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	10474426	2L_10474426_SNP [dm3] 2L_10474426_SNP [dm6]	G	T	2.009e^-4	0.889	UPSTREAM RluA-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18563584	3L_18563584_SNP [dm3] 3L_18570484_SNP [dm6]	A	G	2.019e^-4	0.889	INTRON AstC-R1
2L	19840658	2L_19840658_SNP [dm3] 2L_19840658_SNP [dm6]	A	T	2.039e^-4	0.889	INTRON sick
3R	5709131	3R_5709131_SNP [dm3] 3R_9883409_SNP [dm6]	C	G	2.042e^-4	0.889	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7994944	2L_7994944_SNP [dm3] 2L_7994944_SNP [dm6]	C	T	2.043e^-4	0.889	UTR_3_PRIME CG7227 UPSTREAM pes EXON CR44996	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
2R	6461401	2R_6461401_INS [dm3] 2R_10573896_INS [dm6]	T	TT	2.048e^-4	0.889	INTRON psq
2L	15077943	2L_15077943_SNP [dm3] 2L_15077943_SNP [dm6]	A	T	2.055e^-4	0.889	INTRON CG15270
3R	25768240	3R_25768240_SNP [dm3] 3R_29942518_SNP [dm6]	G	T	2.066e^-4	0.889	INTRON CG15523
3R	25191369	3R_25191369_SNP [dm3] 3R_29365647_SNP [dm6]	A	G	2.068e^-4	0.889	INTERGENIC
2R	19894083	2R_19894083_SNP [dm3] 2R_24006560_SNP [dm6]	A	G	2.069e^-4	0.889	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11598331	3R_11598331_DEL [dm3] 3R_15772609_DEL [dm6]	AA	A	2.076e^-4	0.889	INTERGENIC
2R	11177864	2R_11177864_SNP [dm3] 2R_15290359_SNP [dm6]	A	G	2.081e^-4	0.889	INTRON Trpm
X	2926747	X_2926747_SNP [dm3] X_3032714_SNP [dm6]	G	A	2.082e^-4	0.889	INTRON kirre
2L	19908443	2L_19908443_SNP [dm3] 2L_19908443_SNP [dm6]	T	A	2.089e^-4	0.889	INTRON sick
2R	9147422	2R_9147422_SNP [dm3] 2R_13259917_SNP [dm6]	A	T	2.102e^-4	0.889	UPSTREAM CG42319 INTERGENIC
3L	2645026	3L_2645026_SNP [dm3] 3L_2645026_SNP [dm6]	T	A	2.103e^-4	0.889	UPSTREAM CG1143 INTERGENIC
2R	4176364	2R_4176364_SNP [dm3] 2R_8288859_SNP [dm6]	T	C	2.109e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	6924104	2R_6924104_SNP [dm3] 2R_11036599_SNP [dm6]	A	C	2.114e^-4	0.889	INTRON luna
X	9775935	X_9775935_SNP [dm3] X_9881902_SNP [dm6]	C	T	2.119e^-4	0.889	UPSTREAM CG9689 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	13560280	3R_13560280_SNP [dm3] 3R_17734558_SNP [dm6]	T	C	2.122e^-4	0.889	DOWNSTREAM CG14321 INTERGENIC
2L	6830416	2L_6830416_SNP [dm3] 2L_6830416_SNP [dm6]	C	T	2.128e^-4	0.889	INTRON sens-2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	20179123	3L_20179123_SNP [dm3] 3L_20186023_SNP [dm6]	T	A	2.129e^-4	0.889	UPSTREAM CG42674 INTRON CG42674	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	3375029	X_3375029_SNP [dm3] X_3480996_SNP [dm6]	G	A	2.129e^-4	0.889	UTR_5_PRIME CG10804 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl
X	3375057	X_3375057_SNP [dm3] X_3481024_SNP [dm6]	A	G	2.129e^-4	0.889	UTR_5_PRIME CG10804 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	391184	3L_391184_SNP [dm3] 3L_391184_SNP [dm6]	C	A	2.133e^-4	0.889	DOWNSTREAM CR45378 INTRON trh
2R	7148303	2R_7148303_SNP [dm3] 2R_11260798_SNP [dm6]	C	G	2.133e^-4	0.889	UPSTREAM Cpr47Ec DOWNSTREAM Cpr47Ed INTERGENIC
2L	15281202	2L_15281202_DEL [dm3] 2L_15281202_DEL [dm6]	CC	T	2.142e^-4	0.889	DOWNSTREAM CR45349 INTERGENIC
3R	21701641	3R_21701641_SNP [dm3] 3R_25875919_SNP [dm6]	C	T	2.147e^-4	0.889	INTRON Tsp96F
2R	16880007	2R_16880007_SNP [dm3] 2R_20992502_SNP [dm6]	T	C	2.148e^-4	0.889	INTRON dgt3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	391931	3L_391931_INS [dm3] 3L_391931_INS [dm6]	A	ATTGGATAATTG...	2.163e^-4	0.889	DOWNSTREAM CR45378 INTRON trh
3R	7448384	3R_7448384_SNP [dm3] 3R_11622662_SNP [dm6]	G	A	2.168e^-4	0.889	SYNONYMOUS_CODING CG6808 UPSTREAM CG14711 DOWNSTREAM CG14710	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	14810096	3L_14810096_SNP [dm3] 3L_14816996_SNP [dm6]	C	G	2.173e^-4	0.889	INTRON CG17839
2R	6924102	2R_6924102_SNP [dm3] 2R_11036597_SNP [dm6]	C	G	2.173e^-4	0.889	INTRON luna
3R	25806119	3R_25806119_SNP [dm3] 3R_29980397_SNP [dm6]	C	T	2.174e^-4	0.889	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	4534212	3L_4534212_SNP [dm3] 3L_4534212_SNP [dm6]	G	T	2.176e^-4	0.889	INTRON CG11353
3L	14219627	3L_14219627_SNP [dm3] 3L_14226527_SNP [dm6]	C	T	2.177e^-4	0.889	INTRON nuf	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	20029717	2R_20029717_SNP [dm3] 2R_24142194_SNP [dm6]	T	C	2.179e^-4	0.889	INTRON Dat
X	5064424	X_5064424_SNP [dm3] X_5170391_SNP [dm6]	G	A	2.191e^-4	0.889	INTRON rg & 1 other
3R	10974457	3R_10974457_SNP [dm3] 3R_15148735_SNP [dm6]	T	C	2.196e^-4	0.889	INTERGENIC
X	6817431	X_6817431_SNP [dm3] X_6923398_SNP [dm6]	A	G	2.198e^-4	0.889	INTRON CG14431
3R	20845280	3R_20845280_SNP [dm3] 3R_25019558_SNP [dm6]	T	G	2.217e^-4	0.889	SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_HSA
3L	13870686	3L_13870686_SNP [dm3] 3L_13877586_SNP [dm6]	T	G	2.225e^-4	0.889	INTRON dysc
3R	13103400	3R_13103400_SNP [dm3] 3R_17277678_SNP [dm6]	A	G	2.227e^-4	0.889	INTERGENIC
3L	12508380	3L_12508380_SNP [dm3] 3L_12515280_SNP [dm6]	A	T	2.232e^-4	0.889	UTR_5_PRIME tral UPSTREAM sti & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
2L	13441898	2L_13441898_SNP [dm3] 2L_13441898_SNP [dm6]	C	G	2.235e^-4	0.889	INTRON CG42784 EXON CR45683
2L	19803221	2L_19803221_SNP [dm3] 2L_19803221_SNP [dm6]	G	A	2.242e^-4	0.889	INTRON sick
3L	21523343	3L_21523343_SNP [dm3] 3L_21530243_SNP [dm6]	T	A	2.243e^-4	0.889	UTR_3_PRIME Mkrn1 UPSTREAM CG32442 DOWNSTREAM Mkrn1	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	22025752	3R_22025752_SNP [dm3] 3R_26200030_SNP [dm6]	G	A	2.244e^-4	0.889	INTRON CR44320	TF binding site BDTNP1_TFBS_twi
3L	14812640	3L_14812640_SNP [dm3] 3L_14819540_SNP [dm6]	G	A	2.245e^-4	0.889	INTRON CG17839
2L	12325115	2L_12325115_SNP [dm3] 2L_12325115_SNP [dm6]	T	C	2.245e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11251034	2R_11251034_INS [dm3] 2R_15363529_INS [dm6]	A	ATA	2.261e^-4	0.889	INTRON unc-5
2L	19802454	2L_19802454_SNP [dm3] 2L_19802454_SNP [dm6]	G	T	2.265e^-4	0.889	INTRON sick
2R	11330408	2R_11330408_SNP [dm3] 2R_15442903_SNP [dm6]	C	T	2.266e^-4	0.889	INTRON CG43729
2L	20720966	2L_20720966_SNP [dm3] 2L_20720966_SNP [dm6]	G	T	2.269e^-4	0.889	UPSTREAM CR45306 INTERGENIC
2R	11849590	2R_11849590_SNP [dm3] 2R_15962085_SNP [dm6]	T	G	2.271e^-4	0.889	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6100247	3L_6100247_SNP [dm3] 3L_6107147_SNP [dm6]	C	T	2.274e^-4	0.889	INTRON Ets65A	TF binding site mE1_TFBS_cad
3R	5137887	3R_5137887_SNP [dm3] 3R_9312165_SNP [dm6]	A	G	2.276e^-4	0.889	INTRON CG8861
3L	9873327	3L_9873327_SNP [dm3] 3L_9880227_SNP [dm6]	T	C	2.286e^-4	0.889	NON_SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
3L	15728431	3L_15728431_SNP [dm3] 3L_15735331_SNP [dm6]	A	G	2.289e^-4	0.889	INTERGENIC
3R	13104181	3R_13104181_SNP [dm3] 3R_17278459_SNP [dm6]	G	C	2.292e^-4	0.889	INTERGENIC
3L	1604477	3L_1604477_SNP [dm3] 3L_1604477_SNP [dm6]	C	T	2.298e^-4	0.889	SYNONYMOUS_CODING CG18170 START_GAINED CG33791 UTR_5_PRIME CG33791 UPSTREAM CG33791
2L	19908434	2L_19908434_SNP [dm3] 2L_19908434_SNP [dm6]	T	G	2.300e^-4	0.889	INTRON sick
2R	11080876	2R_11080876_SNP [dm3] 2R_15193371_SNP [dm6]	C	T	2.301e^-4	0.889	UPSTREAM Sfp51E DOWNSTREAM CG43829 INTERGENIC
X	10863787	X_10863787_SNP [dm3] X_10969754_SNP [dm6]	A	G	2.315e^-4	0.889	INTRON CG42339
2R	11571818	2R_11571818_SNP [dm3] 2R_15684313_SNP [dm6]	C	T	2.324e^-4	0.889	SYNONYMOUS_CODING Ranbp11 DOWNSTREAM CG30082 EXON CR43429	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7961322	2R_7961322_SNP [dm3] 2R_12073817_SNP [dm6]	C	T	2.325e^-4	0.889	INTRON CG8888
X	13137038	X_13137038_SNP [dm3] X_13243005_SNP [dm6]	A	G	2.329e^-4	0.889	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	11251263	2R_11251263_SNP [dm3] 2R_15363758_SNP [dm6]	T	A	2.340e^-4	0.889	INTRON unc-5
2L	13226405	2L_13226405_SNP [dm3] 2L_13226405_SNP [dm6]	T	C	2.343e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	21169897	2L_21169897_DEL [dm3] 2L_21169897_DEL [dm6]	TACAGTAAAGAAGAATTTTC...	A	2.344e^-4	0.889	INTRON Acon	TF binding site BDTNP1_TFBS_twi
2L	7711535	2L_7711535_SNP [dm3] 2L_7711535_SNP [dm6]	G	A	2.357e^-4	0.889	UTR_5_PRIME Ntl DOWNSTREAM Tep3 INTRON Ntl & 1 other
3R	3966032	3R_3966032_SNP [dm3] 3R_8140310_SNP [dm6]	G	A	2.359e^-4	0.889	UPSTREAM tRNA:N5:84F & 2 others DOWNSTREAM tRNA:R2:84Fc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	1715731	X_1715731_SNP [dm3] X_1821698_SNP [dm6]	G	C	2.363e^-4	0.889	SYNONYMOUS_CODING CG14811 INTRON CG42666
2R	6929352	2R_6929352_SNP [dm3] 2R_11041847_SNP [dm6]	A	T	2.369e^-4	0.889	INTRON luna	TF binding site mE1_TFBS_cad
2R	20042883	2R_20042883_SNP [dm3] 2R_24155360_SNP [dm6]	A	G	2.396e^-4	0.889	INTRON Dat
2R	14620444	2R_14620444_SNP [dm3] 2R_18732939_SNP [dm6]	A	C	2.399e^-4	0.889	INTRON Hs3st-A
2L	1931214	2L_1931214_SNP [dm3] 2L_1931214_SNP [dm6]	T	A	2.412e^-4	0.889	INTRON CG7337
3L	11791393	3L_11791393_SNP [dm3] 3L_11798293_SNP [dm6]	A	G	2.423e^-4	0.889	SYNONYMOUS_CODING Klp68D DOWNSTREAM CG10361	TF binding site mE1_TFBS_chinmo
2L	19798335	2L_19798335_SNP [dm3] 2L_19798335_SNP [dm6]	A	G	2.424e^-4	0.889	INTRON sick
2L	5560580	2L_5560580_SNP [dm3] 2L_5560580_SNP [dm6]	A	T	2.425e^-4	0.889	INTRON GluRIIB
2L	3434690	2L_3434690_SNP [dm3] 2L_3434690_SNP [dm6]	A	G	2.429e^-4	0.889	INTERGENIC
2L	16041307	2L_16041307_SNP [dm3] 2L_16041307_SNP [dm6]	C	T	2.440e^-4	0.889	UTR_3_PRIME beat-Ic UPSTREAM BicC & 1 other DOWNSTREAM beat-Ic
X	1715591	X_1715591_SNP [dm3] X_1821558_SNP [dm6]	G	T	2.444e^-4	0.889	NON_SYNONYMOUS_CODING CG14811 INTRON CG42666
3R	8274107	3R_8274107_SNP [dm3] 3R_12448385_SNP [dm6]	G	A	2.453e^-4	0.889	NON_SYNONYMOUS_CODING CG5538 UPSTREAM CG18549 DOWNSTREAM Desat1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4026076	3L_4026076_SNP [dm3] 3L_4026076_SNP [dm6]	T	C	2.459e^-4	0.889	UPSTREAM CG11594 & 1 other INTERGENIC
2R	12390862	2R_12390862_DEL [dm3] 2R_16503357_DEL [dm6]	GTATATT	A	2.460e^-4	0.889	INTRON Sema-2a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2L	391610	2L_391610_SNP [dm3] 2L_391610_SNP [dm6]	A	C	2.462e^-4	0.889	INTERGENIC
3R	13132160	3R_13132160_SNP [dm3] 3R_17306438_SNP [dm6]	G	A	2.475e^-4	0.889	INTERGENIC
2L	19802446	2L_19802446_SNP [dm3] 2L_19802446_SNP [dm6]	A	G	2.477e^-4	0.889	INTRON sick
2R	13739800	2R_13739800_SNP [dm3] 2R_17852295_SNP [dm6]	G	T	2.477e^-4	0.889	UPSTREAM CG30323 INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4228778	2L_4228778_SNP [dm3] 2L_4228778_SNP [dm6]	A	G	2.481e^-4	0.889	UPSTREAM CR44608 DOWNSTREAM RpL40 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15728478	3L_15728478_SNP [dm3] 3L_15735378_SNP [dm6]	G	A	2.481e^-4	0.889	INTERGENIC
2L	15090500	2L_15090500_SNP [dm3] 2L_15090500_SNP [dm6]	T	A	2.495e^-4	0.889	INTRON CG15270
3R	13483525	3R_13483525_SNP [dm3] 3R_17657803_SNP [dm6]	C	T	2.495e^-4	0.889	DOWNSTREAM tRNA:CR31577 & 1 other INTRON CG14322
3R	18888266	3R_18888266_SNP [dm3] 3R_23062544_SNP [dm6]	T	C	2.496e^-4	0.889	SYNONYMOUS_CODING Ublcp1 DOWNSTREAM CG17111	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	1931216	2L_1931216_SNP [dm3] 2L_1931216_SNP [dm6]	T	G	2.504e^-4	0.889	INTRON CG7337
3L	2645041	3L_2645041_SNP [dm3] 3L_2645041_SNP [dm6]	G	T	2.518e^-4	0.889	UPSTREAM CG1143 INTERGENIC
2L	19798779	2L_19798779_SNP [dm3] 2L_19798779_SNP [dm6]	C	A	2.520e^-4	0.889	INTRON sick
X	2311636	X_2311636_SNP [dm3] X_2417603_SNP [dm6]	A	T	2.522e^-4	0.889	INTERGENIC	TF binding site mE1_TFBS_sens
3R	13096875	3R_13096875_SNP [dm3] 3R_17271153_SNP [dm6]	C	T	2.525e^-4	0.889	UPSTREAM CR44258 INTERGENIC
2L	15083887	2L_15083887_SNP [dm3] 2L_15083887_SNP [dm6]	A	G	2.527e^-4	0.889	INTRON CG15270
2R	9147435	2R_9147435_SNP [dm3] 2R_13259930_SNP [dm6]	T	A	2.544e^-4	0.889	UPSTREAM CG42319 INTERGENIC
3R	4362491	3R_4362491_SNP [dm3] 3R_8536769_SNP [dm6]	A	G	2.553e^-4	0.889	INTERGENIC
2L	19742818	2L_19742818_SNP [dm3] 2L_19742818_SNP [dm6]	A	C	2.557e^-4	0.889	UTR_3_PRIME CG10631 UPSTREAM CR44906
X	19871594	X_19871594_INS [dm3] X_19977561_INS [dm6]	A	AC	2.563e^-4	0.889	INTERGENIC
3L	21634735	3L_21634735_SNP [dm3] 3L_21641635_SNP [dm6]	G	T	2.564e^-4	0.889	DOWNSTREAM CG32445 INTRON Atox1
X	2461622	X_2461622_INS [dm3] X_2567589_INS [dm6]	T	TT	2.564e^-4	0.889	INTRON Pdfr
2R	11813744	2R_11813744_SNP [dm3] 2R_15926239_SNP [dm6]	C	T	2.570e^-4	0.889	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad
X	1967824	X_1967824_SNP [dm3] X_2073791_SNP [dm6]	C	T	2.571e^-4	0.889	SYNONYMOUS_CODING CG4061 UPSTREAM CG4199	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25759471	3R_25759471_SNP [dm3] 3R_29933749_SNP [dm6]	T	A	2.571e^-4	0.889	SYNONYMOUS_CODING CG42557 UTR_5_PRIME CG42558 UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12426809	2L_12426809_SNP [dm3] 2L_12426809_SNP [dm6]	A	C	2.574e^-4	0.889	UTR_3_PRIME CG5446 DOWNSTREAM CG5446 & 1 other
3R	4938018	3R_4938018_SNP [dm3] 3R_9112296_SNP [dm6]	C	A	2.586e^-4	0.889	INTRON pum
2R	4956302	2R_4956302_SNP [dm3] 2R_9068797_SNP [dm6]	C	T	2.588e^-4	0.889	UPSTREAM ana INTRON ana
2R	13238898	2R_13238898_SNP [dm3] 2R_17351393_SNP [dm6]	A	T	2.588e^-4	0.889	INTRON mbl
2L	2727816	2L_2727816_SNP [dm3] 2L_2727816_SNP [dm6]	A	G	2.589e^-4	0.889	INTRON CG31689
3R	17718934	3R_17718934_SNP [dm3] 3R_21893212_SNP [dm6]	C	T	2.601e^-4	0.889	INTRON CG6678	TF binding site mE1_TFBS_cad
3R	6048371	3R_6048371_SNP [dm3] 3R_10222649_SNP [dm6]	C	T	2.615e^-4	0.889	UPSTREAM CG12420 DOWNSTREAM CG12817 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4092890	2L_4092890_SNP [dm3] 2L_4092890_SNP [dm6]	T	G	2.622e^-4	0.889	INTRON ed
2R	10998491	2R_10998491_SNP [dm3] 2R_15110986_SNP [dm6]	A	G	2.624e^-4	0.889	INTERGENIC
X	8405227	X_8405227_SNP [dm3] X_8511194_SNP [dm6]	C	G	2.628e^-4	0.889	UTR_5_PRIME CG33181 INTRON CG33181	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	4346206	3R_4346206_SNP [dm3] 3R_8520484_SNP [dm6]	A	T	2.637e^-4	0.889	NON_SYNONYMOUS_CODING CG11737
2L	11388359	2L_11388359_SNP [dm3] 2L_11388359_SNP [dm6]	G	C	2.643e^-4	0.889	EXON CR43681	regulatory region REDfly_CRMs
3R	10836334	3R_10836334_SNP [dm3] 3R_15010612_SNP [dm6]	A	G	2.647e^-4	0.889	INTERGENIC
2L	12426740	2L_12426740_SNP [dm3] 2L_12426740_SNP [dm6]	T	G	2.650e^-4	0.889	UTR_3_PRIME CG5446 DOWNSTREAM CG5446 & 1 other
3R	13471016	3R_13471016_SNP [dm3] 3R_17645294_SNP [dm6]	C	T	2.657e^-4	0.889	UPSTREAM tRNA:CR31578 DOWNSTREAM tRNA:CR31568 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	13118352	3R_13118352_SNP [dm3] 3R_17292630_SNP [dm6]	C	T	2.660e^-4	0.889	INTERGENIC
3L	11922558	3L_11922558_SNP [dm3] 3L_11929458_SNP [dm6]	G	C	2.666e^-4	0.889	INTRON CG44837 & 1 other
2L	13881632	2L_13881632_SNP [dm3] 2L_13881632_SNP [dm6]	G	C	2.672e^-4	0.889	INTRON CenG1A
2L	841883	2L_841883_SNP [dm3] 2L_841883_SNP [dm6]	C	G	2.678e^-4	0.889	INTRON drongo
2L	6843855	2L_6843855_DEL [dm3] 2L_6843855_DEL [dm6]	CAC	C	2.678e^-4	0.889	INTERGENIC
2R	18365218	2R_18365218_SNP [dm3] 2R_22477713_SNP [dm6]	T	A	2.679e^-4	0.889	UPSTREAM CG45063 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	465002	3L_465002_SNP [dm3] 3L_465002_SNP [dm6]	A	G	2.683e^-4	0.889	INTRON klar
2L	20128377	2L_20128377_SNP [dm3] 2L_20128377_SNP [dm6]	C	T	2.685e^-4	0.889	INTERGENIC
2R	10998493	2R_10998493_SNP [dm3] 2R_15110988_SNP [dm6]	A	G	2.687e^-4	0.889	INTERGENIC
X	11036909	X_11036909_SNP [dm3] X_11142876_SNP [dm6]	T	G	2.688e^-4	0.889	INTRON CG15202
3L	4164430	3L_4164430_SNP [dm3] 3L_4164430_SNP [dm6]	G	C	2.696e^-4	0.889	SYNONYMOUS_CODING mas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7337340	2L_7337340_SNP [dm3] 2L_7337340_SNP [dm6]	G	T	2.697e^-4	0.889	INTRON Wnt6
3R	4893888	3R_4893888_SNP [dm3] 3R_9068166_SNP [dm6]	T	A	2.705e^-4	0.889	UTR_3_PRIME pum	TF binding site mE1_TFBS_D
2R	12730494	2R_12730494_SNP [dm3] 2R_16842989_SNP [dm6]	C	A	2.711e^-4	0.889	DOWNSTREAM Ugt37c1 INTERGENIC
3L	11722476	3L_11722476_SNP [dm3] 3L_11729376_SNP [dm6]	C	A	2.724e^-4	0.889	SYNONYMOUS_CODING CG32088
3L	1010439	3L_1010439_SNP [dm3] 3L_1010439_SNP [dm6]	A	G	2.729e^-4	0.889	INTRON trio
3L	12134721	3L_12134721_SNP [dm3] 3L_12141621_SNP [dm6]	C	G	2.742e^-4	0.889	NON_SYNONYMOUS_CODING RhoGAP68F
2R	11612855	2R_11612855_SNP [dm3] 2R_15725350_SNP [dm6]	C	G	2.746e^-4	0.889	INTERGENIC
3L	4741044	3L_4741044_SNP [dm3] 3L_4741044_SNP [dm6]	C	A	2.761e^-4	0.889	INTRON RhoGEF64C
3L	10689894	3L_10689894_SNP [dm3] 3L_10696794_SNP [dm6]	T	G	2.766e^-4	0.889	UTR_5_PRIME NijA
3L	1406188	3L_1406188_SNP [dm3] 3L_1406188_SNP [dm6]	C	G	2.771e^-4	0.889	INTRON Ptp61F	TF binding site mE1_TFBS_cad
3L	12286246	3L_12286246_SNP [dm3] 3L_12293146_SNP [dm6]	A	G	2.775e^-4	0.889	INTRON CG4328	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11567861	2R_11567861_SNP [dm3] 2R_15680356_SNP [dm6]	C	A	2.788e^-4	0.889	UPSTREAM CG30091 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	18365279	2R_18365279_SNP [dm3] 2R_22477774_SNP [dm6]	T	C	2.793e^-4	0.889	UPSTREAM CG45063 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	10544277	2R_10544277_SNP [dm3] 2R_14656772_SNP [dm6]	C	T	2.800e^-4	0.889	DOWNSTREAM Adgf-E INTERGENIC
2R	9147155	2R_9147155_SNP [dm3] 2R_13259650_SNP [dm6]	A	T	2.800e^-4	0.889	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3R	13484076	3R_13484076_SNP [dm3] 3R_17658354_SNP [dm6]	T	G	2.803e^-4	0.889	DOWNSTREAM tRNA:CR31575 INTRON CG14322
3L	2996238	3L_2996238_INS [dm3] 3L_2996238_INS [dm6]	C	CGTTAACAC	2.803e^-4	0.889	DOWNSTREAM CG2113 INTERGENIC
X	19562988	X_19562988_SNP [dm3] X_19668955_SNP [dm6]	A	G	2.813e^-4	0.889	UPSTREAM Zw INTRON Zw	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19024800	2R_19024800_SNP [dm3] 2R_23137277_SNP [dm6]	G	A	2.821e^-4	0.889	INTERGENIC
2R	17710257	2R_17710257_SNP [dm3] 2R_21822752_SNP [dm6]	A	G	2.821e^-4	0.889	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3792593	2R_3792593_SNP [dm3] 2R_7905088_SNP [dm6]	G	T	2.822e^-4	0.889	INTRON CG30377
3R	23721514	3R_23721514_SNP [dm3] 3R_27895792_SNP [dm6]	A	C	2.824e^-4	0.889	INTRON CG34353	TF binding site mE1_TFBS_chinmo
X	10088541	X_10088541_SNP [dm3] X_10194508_SNP [dm6]	C	A	2.836e^-4	0.889	UTR_3_PRIME CG43902 INTRON CR44894
2R	18639015	2R_18639015_SNP [dm3] 2R_22751510_SNP [dm6]	A	G	2.842e^-4	0.889	INTRON CG42260
2L	13936353	2L_13936353_DEL [dm3] 2L_13936353_DEL [dm6]	TTGTGGAC	T	2.846e^-4	0.889	INTRON Ance-3	TF binding site mE1_TFBS_HSA
2L	12426805	2L_12426805_INS [dm3] 2L_12426805_INS [dm6]	A	AA	2.851e^-4	0.889	UTR_3_PRIME CG5446 DOWNSTREAM CG5446 & 1 other
2L	19802451	2L_19802451_SNP [dm3] 2L_19802451_SNP [dm6]	T	G	2.852e^-4	0.889	INTRON sick
2R	11813555	2R_11813555_SNP [dm3] 2R_15926050_SNP [dm6]	G	A	2.861e^-4	0.889	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12176805	3L_12176805_SNP [dm3] 3L_12183705_SNP [dm6]	T	C	2.862e^-4	0.889	DOWNSTREAM CAH2 INTERGENIC
3R	12645135	3R_12645135_SNP [dm3] 3R_16819413_SNP [dm6]	T	A	2.863e^-4	0.889	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	8186110	X_8186110_SNP [dm3] X_8292077_SNP [dm6]	T	C	2.867e^-4	0.889	INTRON nAChRalpha3
3L	14834173	3L_14834173_INS [dm3] 3L_14841073_INS [dm6]	A	ATTGCAT	2.870e^-4	0.889	INTRON CG17839
3L	39998	3L_39998_SNP [dm3] 3L_39998_SNP [dm6]	G	T	2.876e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_inv mE1_TFBS_Trl
2R	16880111	2R_16880111_SNP [dm3] 2R_20992606_SNP [dm6]	C	T	2.881e^-4	0.889	SYNONYMOUS_CODING dgt3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	12434771	2R_12434771_DEL [dm3] 2R_16547266_DEL [dm6]	TT	T	2.887e^-4	0.889	INTERGENIC
X	8550494	X_8550494_SNP [dm3] X_8656461_SNP [dm6]	C	G	2.892e^-4	0.889	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	15183466	X_15183466_SNP [dm3] X_15289433_SNP [dm6]	A	G	2.897e^-4	0.889	UPSTREAM CR44664 EXON CR44663
2R	15459606	2R_15459606_SNP [dm3] 2R_19572101_SNP [dm6]	T	G	2.899e^-4	0.889	INTRON sm
3L	2020060	3L_2020060_DEL [dm3] 3L_2020060_DEL [dm6]	GAAG	G	2.902e^-4	0.889	DOWNSTREAM CG42357 INTERGENIC
3L	3547796	3L_3547796_SNP [dm3] 3L_3547796_SNP [dm6]	T	A	2.902e^-4	0.889	INTRON Eip63E
2L	7111501	2L_7111501_SNP [dm3] 2L_7111501_SNP [dm6]	C	T	2.908e^-4	0.889	INTRON Pvf3
2L	5560553	2L_5560553_SNP [dm3] 2L_5560553_SNP [dm6]	A	G	2.910e^-4	0.889	INTRON GluRIIB
2L	5560582	2L_5560582_SNP [dm3] 2L_5560582_SNP [dm6]	G	T	2.914e^-4	0.889	INTRON GluRIIB
2L	5560599	2L_5560599_SNP [dm3] 2L_5560599_SNP [dm6]	C	A	2.914e^-4	0.889	INTRON GluRIIB
3L	4230483	3L_4230483_SNP [dm3] 3L_4230483_SNP [dm6]	T	G	2.915e^-4	0.889	INTRON ImpL2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
2R	13687034	2R_13687034_SNP [dm3] 2R_17799529_SNP [dm6]	A	T	2.918e^-4	0.889	UTR_3_PRIME Dhit
2L	7341286	2L_7341286_SNP [dm3] 2L_7341286_SNP [dm6]	T	G	2.923e^-4	0.889	INTRON Wnt6	TF binding site mE1_TFBS_sbb
X	8404793	X_8404793_SNP [dm3] X_8510760_SNP [dm6]	T	G	2.933e^-4	0.889	INTRON CG33181	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6844362	2R_6844362_SNP [dm3] 2R_10956857_SNP [dm6]	G	T	2.949e^-4	0.889	INTERGENIC
2R	15902238	2R_15902238_SNP [dm3] 2R_20014733_SNP [dm6]	A	G	2.952e^-4	0.889	DOWNSTREAM CR44629 INTERGENIC
3R	5090925	3R_5090925_SNP [dm3] 3R_9265203_SNP [dm6]	G	A	2.953e^-4	0.889	UTR_3_PRIME Aats-trp	TF binding site mE1_TFBS_cad
X	4494874	X_4494874_SNP [dm3] X_4600841_SNP [dm6]	A	T	2.954e^-4	0.889	INTRON CR32773	TF binding site BDTNP1_TFBS_dl
2R	10998501	2R_10998501_SNP [dm3] 2R_15110996_SNP [dm6]	T	G	2.954e^-4	0.889	INTERGENIC
2L	15077941	2L_15077941_SNP [dm3] 2L_15077941_SNP [dm6]	G	T	2.961e^-4	0.889	INTRON CG15270
2R	11330331	2R_11330331_SNP [dm3] 2R_15442826_SNP [dm6]	A	G	2.963e^-4	0.889	INTRON CG43729
2L	3832016	2L_3832016_SNP [dm3] 2L_3832016_SNP [dm6]	G	A	2.973e^-4	0.889	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE
3R	13450738	3R_13450738_SNP [dm3] 3R_17625016_SNP [dm6]	G	T	2.979e^-4	0.889	UPSTREAM AttD & 2 others INTERGENIC
2R	13589045	2R_13589045_SNP [dm3] 2R_17701540_SNP [dm6]	C	T	2.990e^-4	0.889	UPSTREAM snoRNA:snR38:54Eb & 3 others DOWNSTREAM snoRNA:U29:54Ec & 4 others INTRON Uhg1
2R	11978141	2R_11978141_DEL [dm3] 2R_16090636_DEL [dm6]	CC	C	2.995e^-4	0.889	INTRON Dg
3L	11901083	3L_11901083_SNP [dm3] 3L_11907983_SNP [dm6]	A	C	2.998e^-4	0.889	INTRON CG44837
X	6817423	X_6817423_SNP [dm3] X_6923390_SNP [dm6]	A	G	3.008e^-4	0.889	INTRON CG14431
3L	15728441	3L_15728441_SNP [dm3] 3L_15735341_SNP [dm6]	C	T	3.010e^-4	0.889	INTERGENIC
3R	25765336	3R_25765336_SNP [dm3] 3R_29939614_SNP [dm6]	T	C	3.023e^-4	0.889	SYNONYMOUS_CODING CG15523
3L	18483086	3L_18483086_SNP [dm3] 3L_18489986_SNP [dm6]	A	G	3.028e^-4	0.889	INTRON AstC-R2
2L	19522029	2L_19522029_SNP [dm3] 2L_19522029_SNP [dm6]	C	T	3.029e^-4	0.889	SYNONYMOUS_CODING CG10132	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7416600	3R_7416600_DEL [dm3] 3R_11590878_DEL [dm6]	TAA	T	3.029e^-4	0.889	UTR_3_PRIME Jupiter UPSTREAM CG6791	TF binding site mE1_TFBS_HSA
2L	2520865	2L_2520865_SNP [dm3] 2L_2520865_SNP [dm6]	G	C	3.030e^-4	0.889	INTERGENIC
3R	19951794	3R_19951794_SNP [dm3] 3R_24126072_SNP [dm6]	T	A	3.032e^-4	0.889	NON_SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16143483	3L_16143483_SNP [dm3] 3L_16150383_SNP [dm6]	C	G	3.034e^-4	0.889	INTRON CG5151	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12745711	3R_12745711_SNP [dm3] 3R_16919989_SNP [dm6]	T	A	3.035e^-4	0.889	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11649948	3L_11649948_SNP [dm3] 3L_11656848_SNP [dm6]	A	T	3.036e^-4	0.889	UPSTREAM mir-274 INTRON CG32085
2R	5838941	2R_5838941_SNP [dm3] 2R_9951436_SNP [dm6]	G	T	3.046e^-4	0.889	INTRON Mef2
3L	14079700	3L_14079700_SNP [dm3] 3L_14086600_SNP [dm6]	G	T	3.052e^-4	0.889	DOWNSTREAM CG8100 INTERGENIC
3R	13483555	3R_13483555_SNP [dm3] 3R_17657833_SNP [dm6]	T	G	3.054e^-4	0.889	DOWNSTREAM tRNA:CR31577 & 1 other INTRON CG14322
3R	8656240	3R_8656240_INS [dm3] 3R_12830518_INS [dm6]	G	GGAGTG	3.058e^-4	0.889	INTERGENIC
2L	3401964	2L_3401964_SNP [dm3] 2L_3401964_SNP [dm6]	A	G	3.060e^-4	0.889	INTERGENIC
2L	2669602	2L_2669602_SNP [dm3] 2L_2669602_SNP [dm6]	G	T	3.065e^-4	0.889	UPSTREAM Gr23a INTERGENIC
2L	4551957	2L_4551957_SNP [dm3] 2L_4551957_SNP [dm6]	C	G	3.065e^-4	0.889	INTRON dp
3L	14065444	3L_14065444_SNP [dm3] 3L_14072344_SNP [dm6]	G	A	3.066e^-4	0.889	DOWNSTREAM CG32138 INTRON Pex1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	4737896	3L_4737896_SNP [dm3] 3L_4737896_SNP [dm6]	G	A	3.067e^-4	0.889	INTRON RhoGEF64C
3R	5129982	3R_5129982_SNP [dm3] 3R_9304260_SNP [dm6]	C	G	3.077e^-4	0.889	INTRON CG8861
2L	9920366	2L_9920366_INS [dm3] 2L_9920366_INS [dm6]	A	ATCA	3.080e^-4	0.889	UTR_5_PRIME CG4594 DOWNSTREAM CG4598
2R	8663846	2R_8663846_SNP [dm3] 2R_12776341_SNP [dm6]	A	G	3.081e^-4	0.889	UPSTREAM CR45266 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	14400361	2R_14400361_SNP [dm3] 2R_18512856_SNP [dm6]	C	A	3.083e^-4	0.889	INTERGENIC
2L	4429123	2L_4429123_SNP [dm3] 2L_4429123_SNP [dm6]	G	A	3.085e^-4	0.889	INTRON CG15431
X	1930114	X_1930114_SNP [dm3] X_2036081_SNP [dm6]	T	A	3.093e^-4	0.889	INTRON Actn	TF binding site BDTNP1_TFBS_dl
2L	7171885	2L_7171885_INS [dm3] 2L_7171885_INS [dm6]	A	ACTAGA	3.094e^-4	0.889	INTERGENIC
2R	11637733	2R_11637733_SNP [dm3] 2R_15750228_SNP [dm6]	G	A	3.095e^-4	0.889	INTRON CG30089	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1012890	2L_1012890_SNP [dm3] 2L_1012890_SNP [dm6]	T	G	3.098e^-4	0.889	UTR_3_PRIME IA-2
2L	19804784	2L_19804784_SNP [dm3] 2L_19804784_SNP [dm6]	A	C	3.101e^-4	0.889	INTRON sick
2L	12527584	2L_12527584_SNP [dm3] 2L_12527584_SNP [dm6]	A	T	3.106e^-4	0.889	INTRON bun	TF binding site BDTNP1_TFBS_dl
3R	7483603	3R_7483603_SNP [dm3] 3R_11657881_SNP [dm6]	C	T	3.108e^-4	0.889	INTRON CG42327	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18282956	3L_18282956_INS [dm3] 3L_18289856_INS [dm6]	T	TAAGCCTTA	3.111e^-4	0.889	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	1696416	2L_1696416_SNP [dm3] 2L_1696416_SNP [dm6]	A	G	3.112e^-4	0.889	SYNONYMOUS_CODING chinmo UTR_3_PRIME chinmo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	21757964	2L_21757964_SNP [dm3] 2L_21757964_SNP [dm6]	C	T	3.116e^-4	0.889	UPSTREAM CG1416 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	14829288	3L_14829288_SNP [dm3] 3L_14836188_SNP [dm6]	T	C	3.119e^-4	0.889	INTRON CG17839
3R	8670343	3R_8670343_SNP [dm3] 3R_12844621_SNP [dm6]	G	A	3.132e^-4	0.889	INTRON beat-Va
2L	3401983	2L_3401983_SNP [dm3] 2L_3401983_SNP [dm6]	T	A	3.132e^-4	0.889	INTERGENIC
2L	19794717	2L_19794717_SNP [dm3] 2L_19794717_SNP [dm6]	C	T	3.133e^-4	0.889	SYNONYMOUS_CODING fs_2_ltoPP43
3L	14065453	3L_14065453_SNP [dm3] 3L_14072353_SNP [dm6]	C	T	3.135e^-4	0.889	DOWNSTREAM CG32138 INTRON Pex1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
X	20403448	X_20403448_SNP [dm3] X_20532421_SNP [dm6]	C	T	3.136e^-4	0.889	INTERGENIC
3L	8547701	3L_8547701_SNP [dm3] 3L_8554601_SNP [dm6]	A	G	3.138e^-4	0.889	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8547718	3L_8547718_SNP [dm3] 3L_8554618_SNP [dm6]	C	A	3.138e^-4	0.889	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8207850	3L_8207850_SNP [dm3] 3L_8214750_SNP [dm6]	T	C	3.138e^-4	0.889	UPSTREAM CG8012 INTERGENIC
X	1931456	X_1931456_SNP [dm3] X_2037423_SNP [dm6]	T	C	3.140e^-4	0.889	UPSTREAM Actn INTRON Actn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	13756785	2L_13756785_SNP [dm3] 2L_13756785_SNP [dm6]	T	A	3.142e^-4	0.889	DOWNSTREAM CR44846 INTRON TM9SF4
3L	18272149	3L_18272149_SNP [dm3] 3L_18279049_SNP [dm6]	A	C	3.156e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	14341704	2R_14341704_SNP [dm3] 2R_18454199_SNP [dm6]	T	C	3.157e^-4	0.889	SYNONYMOUS_CODING CG17669	TF binding site mE1_TFBS_cad
X	12850971	X_12850971_SNP [dm3] X_12956938_SNP [dm6]	G	T	3.158e^-4	0.889	INTRON hec
3L	45157	3L_45157_INS [dm3] 3L_45157_INS [dm6]	A	AC	3.163e^-4	0.889	INTERGENIC
2L	22306203	2L_22306203_SNP [dm3] 2L_22306203_SNP [dm6]	T	C	3.167e^-4	0.889	INTERGENIC
3L	16896011	3L_16896011_SNP [dm3] 3L_16902911_SNP [dm6]	A	T	3.168e^-4	0.889	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo
3R	19601425	3R_19601425_SNP [dm3] 3R_23775703_SNP [dm6]	C	A	3.173e^-4	0.889	NON_SYNONYMOUS_CODING Nup98-96	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13589050	2R_13589050_SNP [dm3] 2R_17701545_SNP [dm6]	T	C	3.174e^-4	0.889	UPSTREAM snoRNA:snR38:54Eb & 3 others DOWNSTREAM snoRNA:U29:54Ec & 4 others INTRON Uhg1
2R	17236255	2R_17236255_SNP [dm3] 2R_21348750_SNP [dm6]	C	T	3.178e^-4	0.889	UPSTREAM CG9822 DOWNSTREAM CG17974 INTERGENIC
3L	4164121	3L_4164121_SNP [dm3] 3L_4164121_SNP [dm6]	A	G	3.178e^-4	0.889	SYNONYMOUS_CODING mas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15117802	3R_15117802_SNP [dm3] 3R_19292080_SNP [dm6]	G	T	3.178e^-4	0.889	INTERGENIC
2R	6319565	2R_6319565_SNP [dm3] 2R_10432060_SNP [dm6]	C	T	3.190e^-4	0.889	INTRON RanBPM	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	21388808	3R_21388808_SNP [dm3] 3R_25563086_SNP [dm6]	C	T	3.192e^-4	0.889	INTRON msi
X	19873187	X_19873187_INS [dm3] X_19979154_INS [dm6]	A	ATTTTCTATTAAGAGATAT...	3.192e^-4	0.889	INTERGENIC
2R	17035200	2R_17035200_SNP [dm3] 2R_21147695_SNP [dm6]	C	T	3.197e^-4	0.889	UTR_3_PRIME CG15657 DOWNSTREAM CG30389 & 1 other	TF binding site mE1_TFBS_cad
X	19603387	X_19603387_INS [dm3] X_19709354_INS [dm6]	T	TG	3.198e^-4	0.889	INTRON meso18E
3R	25944442	3R_25944442_SNP [dm3] 3R_30118720_SNP [dm6]	C	T	3.198e^-4	0.889	INTRON sima	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11837994	2R_11837994_SNP [dm3] 2R_15950489_SNP [dm6]	G	A	3.199e^-4	0.889	INTRON Strn-Mlck	TF binding site mE1_TFBS_HSA
2L	8739771	2L_8739771_SNP [dm3] 2L_8739771_SNP [dm6]	A	G	3.201e^-4	0.889	INTRON raw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	14045996	3R_14045996_SNP [dm3] 3R_18220274_SNP [dm6]	A	T	3.203e^-4	0.889	UTR_5_PRIME CG7183 UPSTREAM CG7988 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11596105	3L_11596105_SNP [dm3] 3L_11603005_SNP [dm6]	A	C	3.209e^-4	0.889	NON_SYNONYMOUS_CODING CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	4169410	2L_4169410_SNP [dm3] 2L_4169410_SNP [dm6]	C	T	3.216e^-4	0.889	INTERGENIC
2L	7597100	2L_7597100_SNP [dm3] 2L_7597100_SNP [dm6]	T	G	3.225e^-4	0.889	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_disco mE1_TFBS_HSA
3R	23320228	3R_23320228_INS [dm3] 3R_27494506_INS [dm6]	T	TT	3.238e^-4	0.889	INTERGENIC
3R	23320230	3R_23320230_SNP [dm3] 3R_27494508_SNP [dm6]	G	T	3.238e^-4	0.889	INTERGENIC
X	4091246	X_4091246_SNP [dm3] X_4197213_SNP [dm6]	A	G	3.248e^-4	0.889	INTRON Fas2
3L	4164070	3L_4164070_SNP [dm3] 3L_4164070_SNP [dm6]	T	G	3.248e^-4	0.889	SYNONYMOUS_CODING mas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7365708	2L_7365708_SNP [dm3] 2L_7365708_SNP [dm6]	C	T	3.249e^-4	0.889	INTRON Wnt10
2L	12527578	2L_12527578_SNP [dm3] 2L_12527578_SNP [dm6]	C	A	3.254e^-4	0.889	INTRON bun	TF binding site BDTNP1_TFBS_dl
3R	25758889	3R_25758889_INS [dm3] 3R_29933167_INS [dm6]	G	GTTCT	3.257e^-4	0.889	UPSTREAM CG42557 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	16919631	2R_16919631_SNP [dm3] 2R_21032126_SNP [dm6]	G	A	3.269e^-4	0.889	INTERGENIC
3R	14695533	3R_14695533_SNP [dm3] 3R_18869811_SNP [dm6]	T	A	3.272e^-4	0.889	INTERGENIC
3R	21014655	3R_21014655_SNP [dm3] 3R_25188933_SNP [dm6]	G	A	3.282e^-4	0.889	INTRON lobo & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	13178776	3R_13178776_SNP [dm3] 3R_17353054_SNP [dm6]	T	A	3.306e^-4	0.889	INTRON beat-IIa
2L	5513843	2L_5513843_SNP [dm3] 2L_5513843_SNP [dm6]	T	G	3.306e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
X	12798502	X_12798502_SNP [dm3] X_12904469_SNP [dm6]	C	T	3.307e^-4	0.889	SYNONYMOUS_CODING CG4404 UPSTREAM CG4407	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17236343	2R_17236343_SNP [dm3] 2R_21348838_SNP [dm6]	G	A	3.309e^-4	0.889	UPSTREAM CG9822 DOWNSTREAM CG17974 INTERGENIC
3L	4737895	3L_4737895_SNP [dm3] 3L_4737895_SNP [dm6]	A	G	3.309e^-4	0.889	INTRON RhoGEF64C
2R	11065025	2R_11065025_SNP [dm3] 2R_15177520_SNP [dm6]	A	T	3.311e^-4	0.889	INTRON igl
2L	5560612	2L_5560612_SNP [dm3] 2L_5560612_SNP [dm6]	C	T	3.312e^-4	0.889	INTRON GluRIIB
2L	4741086	2L_4741086_SNP [dm3] 2L_4741086_SNP [dm6]	T	A	3.314e^-4	0.889	INTRON CG15630
2L	15540603	2L_15540603_SNP [dm3] 2L_15540603_SNP [dm6]	A	G	3.315e^-4	0.889	INTERGENIC
X	13332044	X_13332044_SNP [dm3] X_13438011_SNP [dm6]	A	T	3.322e^-4	0.889	INTERGENIC
3L	17927090	3L_17927090_SNP [dm3] 3L_17933990_SNP [dm6]	T	C	3.332e^-4	0.889	UPSTREAM CG43173 & 1 other INTERGENIC
2L	14871517	2L_14871517_INS [dm3] 2L_14871517_INS [dm6]	A	AC	3.336e^-4	0.889	INTRON CG4480
2R	20042996	2R_20042996_SNP [dm3] 2R_24155473_SNP [dm6]	A	G	3.340e^-4	0.889	INTRON Dat
3L	23722073	3L_23722073_SNP [dm3] 3L_23728973_SNP [dm6]	A	C	3.340e^-4	0.889	DOWNSTREAM CG40298 INTERGENIC
3R	14291727	3R_14291727_SNP [dm3] 3R_18466005_SNP [dm6]	T	A	3.351e^-4	0.889	INTRON fru
3L	16139888	3L_16139888_SNP [dm3] 3L_16146788_SNP [dm6]	A	G	3.351e^-4	0.889	INTRON CG5151
2L	20660246	2L_20660246_SNP [dm3] 2L_20660246_SNP [dm6]	G	T	3.354e^-4	0.889	SYNONYMOUS_CODING CG31678	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5285844	3L_5285844_SNP [dm3] 3L_5292744_SNP [dm6]	C	T	3.354e^-4	0.889	INTERGENIC
3R	14623642	3R_14623642_SNP [dm3] 3R_18797920_SNP [dm6]	G	A	3.365e^-4	0.889	INTERGENIC
3L	11284553	3L_11284553_SNP [dm3] 3L_11291453_SNP [dm6]	G	A	3.366e^-4	0.889	INTRON CG6175
3L	3680449	3L_3680449_SNP [dm3] 3L_3680449_SNP [dm6]	G	A	3.367e^-4	0.889	INTERGENIC	TF binding site mE1_TFBS_cad
X	4539167	X_4539167_SNP [dm3] X_4645134_SNP [dm6]	C	T	3.368e^-4	0.889	UTR_3_PRIME HLH4C UPSTREAM CG3062
2R	19484343	2R_19484343_SNP [dm3] 2R_23596820_SNP [dm6]	G	A	3.369e^-4	0.889	INTRON apt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7122046	2L_7122046_SNP [dm3] 2L_7122046_SNP [dm6]	C	A	3.370e^-4	0.889	INTRON Pvf3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11574029	2R_11574029_SNP [dm3] 2R_15686524_SNP [dm6]	G	A	3.375e^-4	0.889	SYNONYMOUS_CODING Ranbp11 UPSTREAM CG30082 DOWNSTREAM Cep89	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3L	2645044	3L_2645044_SNP [dm3] 3L_2645044_SNP [dm6]	T	G	3.379e^-4	0.889	UPSTREAM CG1143 INTERGENIC
2R	9072796	2R_9072796_SNP [dm3] 2R_13185291_SNP [dm6]	T	C	3.386e^-4	0.889	UPSTREAM CG17724 DOWNSTREAM Kdm4B INTRON CG17724 & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11724086	2R_11724086_SNP [dm3] 2R_15836581_SNP [dm6]	A	G	3.391e^-4	0.889	INTRON tun	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens mE1_TFBS_Trl
2R	11573498	2R_11573498_SNP [dm3] 2R_15685993_SNP [dm6]	A	T	3.396e^-4	0.889	SYNONYMOUS_CODING CG30082 INTRON Ranbp11
3R	13450901	3R_13450901_SNP [dm3] 3R_17625179_SNP [dm6]	A	G	3.396e^-4	0.889	UPSTREAM AttD & 2 others INTERGENIC
3L	7519631	3L_7519631_SNP [dm3] 3L_7526531_SNP [dm6]	C	T	3.401e^-4	0.889	SYNONYMOUS_CODING ltl	TF binding site mE1_TFBS_chinmo
3L	5737107	3L_5737107_SNP [dm3] 3L_5744007_SNP [dm6]	A	G	3.401e^-4	0.889	UTR_3_PRIME sif INTRON sif
2R	16879988	2R_16879988_SNP [dm3] 2R_20992483_SNP [dm6]	A	G	3.401e^-4	0.889	INTRON dgt3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	14809022	3L_14809022_SNP [dm3] 3L_14815922_SNP [dm6]	A	T	3.406e^-4	0.889	INTRON CG17839
3R	14695537	3R_14695537_SNP [dm3] 3R_18869815_SNP [dm6]	C	T	3.406e^-4	0.889	INTERGENIC
3L	11901084	3L_11901084_SNP [dm3] 3L_11907984_SNP [dm6]	T	C	3.426e^-4	0.889	INTRON CG44837
3L	11901090	3L_11901090_SNP [dm3] 3L_11907990_SNP [dm6]	C	T	3.426e^-4	0.889	INTRON CG44837
X	19239423	X_19239423_SNP [dm3] X_19345390_SNP [dm6]	T	A	3.427e^-4	0.889	INTRON nAChRalpha7
3L	12541416	3L_12541416_SNP [dm3] 3L_12548316_SNP [dm6]	G	A	3.433e^-4	0.889	INTRON sowah
X	1967857	X_1967857_SNP [dm3] X_2073824_SNP [dm6]	A	G	3.450e^-4	0.889	SYNONYMOUS_CODING CG4061 UPSTREAM CG4199 DOWNSTREAM CG4045	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9044064	3L_9044064_SNP [dm3] 3L_9050964_SNP [dm6]	T	C	3.457e^-4	0.889	UPSTREAM Argk INTRON Argk	TF binding site mE1_TFBS_cad
2L	15160083	2L_15160083_SNP [dm3] 2L_15160083_SNP [dm6]	C	A	3.460e^-4	0.889	UPSTREAM CR44770 EXON CR44771	TF binding site mE1_TFBS_cad
X	14855018	X_14855018_SNP [dm3] X_14960985_SNP [dm6]	G	A	3.466e^-4	0.889	INTRON eag	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	10188996	X_10188996_INS [dm3] X_10294963_INS [dm6]	G	GCCCAAG	3.475e^-4	0.889	INTRON alpha-Man-I
3R	18174554	3R_18174554_SNP [dm3] 3R_22348832_SNP [dm6]	A	G	3.487e^-4	0.889	INTERGENIC
2L	12322444	2L_12322444_SNP [dm3] 2L_12322444_SNP [dm6]	A	C	3.490e^-4	0.889	INTERGENIC
2L	12428595	2L_12428595_SNP [dm3] 2L_12428595_SNP [dm6]	A	C	3.493e^-4	0.889	SPLICE_SITE_REGION CG6388 SYNONYMOUS_CODING CG6388 UPSTREAM CG5446	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	19873199	X_19873199_INS [dm3] X_19979166_INS [dm6]	T	TCTGTAGTT	3.495e^-4	0.889	INTERGENIC
3R	8662660	3R_8662660_SNP [dm3] 3R_12836938_SNP [dm6]	G	A	3.504e^-4	0.889	INTERGENIC
2L	1536010	2L_1536010_INS [dm3] 2L_1536010_INS [dm6]	T	TTT	3.513e^-4	0.889	INTERGENIC
2L	18885261	2L_18885261_SNP [dm3] 2L_18885261_SNP [dm6]	C	G	3.514e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	7338333	2L_7338333_SNP [dm3] 2L_7338333_SNP [dm6]	G	T	3.514e^-4	0.889	INTRON Wnt6
2L	15083918	2L_15083918_SNP [dm3] 2L_15083918_SNP [dm6]	A	T	3.518e^-4	0.889	INTRON CG15270
2L	19797522	2L_19797522_SNP [dm3] 2L_19797522_SNP [dm6]	G	A	3.530e^-4	0.889	INTRON sick
2R	11643918	2R_11643918_SNP [dm3] 2R_15756413_SNP [dm6]	G	A	3.532e^-4	0.889	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13589040	2R_13589040_SNP [dm3] 2R_17701535_SNP [dm6]	C	T	3.537e^-4	0.889	UPSTREAM snoRNA:snR38:54Eb & 3 others DOWNSTREAM snoRNA:U29:54Ec & 4 others INTRON Uhg1
2R	16943100	2R_16943100_SNP [dm3] 2R_21055595_SNP [dm6]	G	A	3.539e^-4	0.889	INTRON shg	TF binding site BDTNP1_TFBS_dl
2R	13589054	2R_13589054_SNP [dm3] 2R_17701549_SNP [dm6]	A	G	3.541e^-4	0.889	UPSTREAM snoRNA:snR38:54Eb & 3 others DOWNSTREAM snoRNA:U29:54Ec & 4 others INTRON Uhg1
2R	6796436	2R_6796436_SNP [dm3] 2R_10908931_SNP [dm6]	C	T	3.560e^-4	0.889	UPSTREAM Obp47a INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10473503	3L_10473503_SNP [dm3] 3L_10480403_SNP [dm6]	G	T	3.565e^-4	0.889	INTERGENIC
3R	15229407	3R_15229407_SNP [dm3] 3R_19403685_SNP [dm6]	G	A	3.567e^-4	0.889	NON_SYNONYMOUS_CODING CG5316 UTR_5_PRIME CG5316 UPSTREAM Ino80	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
X	16848553	X_16848553_INS [dm3] X_16954520_INS [dm6]	C	TGACTTAAGA	3.568e^-4	0.889	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12428580	2L_12428580_SNP [dm3] 2L_12428580_SNP [dm6]	C	G	3.574e^-4	0.889	SYNONYMOUS_CODING CG6388 UPSTREAM CG5446	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	12725272	3R_12725272_SNP [dm3] 3R_16899550_SNP [dm6]	C	T	3.577e^-4	0.889	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10998512	2R_10998512_SNP [dm3] 2R_15111007_SNP [dm6]	G	T	3.579e^-4	0.889	INTERGENIC
3L	2996204	3L_2996204_SNP [dm3] 3L_2996204_SNP [dm6]	G	C	3.581e^-4	0.889	DOWNSTREAM CG2113 INTERGENIC
3R	13211899	3R_13211899_SNP [dm3] 3R_17386177_SNP [dm6]	C	A	3.594e^-4	0.889	SYNONYMOUS_CODING lute INTRON Brf & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2R	13238095	2R_13238095_SNP [dm3] 2R_17350590_SNP [dm6]	C	A	3.594e^-4	0.889	INTRON mbl
3L	13324761	3L_13324761_SNP [dm3] 3L_13331661_SNP [dm6]	A	T	3.594e^-4	0.889	INTERGENIC
2L	12148371	2L_12148371_SNP [dm3] 2L_12148371_SNP [dm6]	T	A	3.595e^-4	0.889	INTRON CG31760
3L	1406288	3L_1406288_SNP [dm3] 3L_1406288_SNP [dm6]	A	G	3.597e^-4	0.889	INTRON Ptp61F	TF binding site mE1_TFBS_cad
2L	8340642	2L_8340642_SNP [dm3] 2L_8340642_SNP [dm6]	C	T	3.597e^-4	0.889	INTRON CG14274
X	15183186	X_15183186_SNP [dm3] X_15289153_SNP [dm6]	A	C	3.599e^-4	0.889	UPSTREAM CR44663 INTERGENIC
2L	19469329	2L_19469329_SNP [dm3] 2L_19469329_SNP [dm6]	C	T	3.602e^-4	0.889	DOWNSTREAM CR45723 EXON CR45722
2L	18781677	2L_18781677_SNP [dm3] 2L_18781677_SNP [dm6]	G	A	3.606e^-4	0.889	INTRON ham	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
X	11109802	X_11109802_SNP [dm3] X_11215769_SNP [dm6]	A	T	3.614e^-4	0.889	INTERGENIC
3L	59498	3L_59498_SNP [dm3] 3L_59498_SNP [dm6]	C	T	3.618e^-4	0.889	INTERGENIC
2R	12730663	2R_12730663_SNP [dm3] 2R_16843158_SNP [dm6]	C	A	3.621e^-4	0.889	DOWNSTREAM Ugt37c1 INTERGENIC
3R	19028541	3R_19028541_SNP [dm3] 3R_23202819_SNP [dm6]	A	T	3.622e^-4	0.889	SYNONYMOUS_CODING fzo INTRON cnc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17951297	2R_17951297_SNP [dm3] 2R_22063792_SNP [dm6]	A	T	3.624e^-4	0.889	INTRON Snp
X	12798505	X_12798505_SNP [dm3] X_12904472_SNP [dm6]	C	T	3.631e^-4	0.889	SYNONYMOUS_CODING CG4404 UPSTREAM CG4407	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12415089	2L_12415089_SNP [dm3] 2L_12415089_SNP [dm6]	G	A	3.640e^-4	0.889	INTRON vir-1
3R	15483270	3R_15483270_INS [dm3] 3R_19657548_INS [dm6]	A	AA	3.642e^-4	0.889	INTRON CG6184
2L	19753855	2L_19753855_SNP [dm3] 2L_19753855_SNP [dm6]	C	G	3.647e^-4	0.889	SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1236052	3L_1236052_SNP [dm3] 3L_1236052_SNP [dm6]	C	T	3.650e^-4	0.889	DOWNSTREAM CG33966 & 1 other INTRON CG9194	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	13582821	X_13582821_DEL [dm3] X_13688788_DEL [dm6]	GG	G	3.656e^-4	0.889	INTRON CG9940	TF binding site BDTNP1_TFBS_twi
3R	17931811	3R_17931811_SNP [dm3] 3R_22106089_SNP [dm6]	T	C	3.658e^-4	0.889	DOWNSTREAM CG13407 INTRON CG5778
2L	16244002	2L_16244002_SNP [dm3] 2L_16244002_SNP [dm6]	A	C	3.659e^-4	0.889	NON_SYNONYMOUS_CODING CG42818
X	16052774	X_16052774_SNP [dm3] X_16158741_SNP [dm6]	A	G	3.660e^-4	0.889	INTERGENIC
2L	2291400	2L_2291400_SNP [dm3] 2L_2291400_SNP [dm6]	G	C	3.661e^-4	0.889	UPSTREAM robl22E INTERGENIC
3L	12391698	3L_12391698_SNP [dm3] 3L_12398598_SNP [dm6]	A	T	3.663e^-4	0.889	NON_SYNONYMOUS_CODING CG32104 DOWNSTREAM Smyd4	TF binding site BDTNP1_TFBS_dl
3L	11728418	3L_11728418_SNP [dm3] 3L_11735318_SNP [dm6]	T	G	3.666e^-4	0.889	UTR_3_PRIME CG6024 DOWNSTREAM CG6024
3R	12514886	3R_12514886_SNP [dm3] 3R_16689164_SNP [dm6]	A	C	3.670e^-4	0.889	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10974468	3R_10974468_SNP [dm3] 3R_15148746_SNP [dm6]	G	C	3.671e^-4	0.889	INTERGENIC
3L	12159601	3L_12159601_SNP [dm3] 3L_12166501_SNP [dm6]	T	C	3.678e^-4	0.889	SYNONYMOUS_CODING Rh7	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	9651269	X_9651269_SNP [dm3] X_9757236_SNP [dm6]	A	T	3.681e^-4	0.889	DOWNSTREAM Sp1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11809705	2R_11809705_SNP [dm3] 2R_15922200_SNP [dm6]	G	A	3.696e^-4	0.889	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
3L	15116074	3L_15116074_SNP [dm3] 3L_15122974_SNP [dm6]	C	T	3.698e^-4	0.889	SYNONYMOUS_CODING CG16959 DOWNSTREAM CG32847 INTRON Cep135
2R	15839488	2R_15839488_DEL [dm3] 2R_19951983_DEL [dm6]	GC	G	3.710e^-4	0.889	DOWNSTREAM CG10822 INTERGENIC
X	5080122	X_5080122_SNP [dm3] X_5186089_SNP [dm6]	A	C	3.716e^-4	0.889	INTRON rg & 1 other
3R	7095110	3R_7095110_SNP [dm3] 3R_11269388_SNP [dm6]	T	C	3.727e^-4	0.889	DOWNSTREAM CR31386 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17934212	2R_17934212_SNP [dm3] 2R_22046707_SNP [dm6]	A	G	3.729e^-4	0.889	INTERGENIC
X	1716009	X_1716009_SNP [dm3] X_1821976_SNP [dm6]	G	C	3.733e^-4	0.889	NON_SYNONYMOUS_CODING CG14811 INTRON CG42666
3L	8879430	3L_8879430_SNP [dm3] 3L_8886330_SNP [dm6]	G	C	3.750e^-4	0.889	SYNONYMOUS_CODING dally
2L	13152778	2L_13152778_SNP [dm3] 2L_13152778_SNP [dm6]	A	G	3.755e^-4	0.889	INTERGENIC
3R	9572824	3R_9572824_SNP [dm3] 3R_13747102_SNP [dm6]	T	C	3.761e^-4	0.889	SYNONYMOUS_CODING CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	13864345	2L_13864345_SNP [dm3] 2L_13864345_SNP [dm6]	G	A	3.764e^-4	0.889	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16988899	3R_16988899_SNP [dm3] 3R_21163177_SNP [dm6]	T	A	3.768e^-4	0.889	UPSTREAM CG5810 INTRON SNF4Agamma
X	16052807	X_16052807_SNP [dm3] X_16158774_SNP [dm6]	C	T	3.771e^-4	0.889	INTERGENIC
X	3377954	X_3377954_SNP [dm3] X_3483921_SNP [dm6]	C	A	3.774e^-4	0.889	DOWNSTREAM CG14270 INTRON CR44999 & 1 other	TF binding site mE1_TFBS_sens
X	1718768	X_1718768_DEL [dm3] X_1824735_DEL [dm6]	CGATTC	C	3.794e^-4	0.889	UPSTREAM CG42666 INTRON CG42666	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	22518318	3R_22518318_SNP [dm3] 3R_26692596_SNP [dm6]	A	T	3.798e^-4	0.889	UTR_3_PRIME TwdlQ	TF binding site mE1_TFBS_cad
3L	12446756	3L_12446756_DEL [dm3] 3L_12453656_DEL [dm6]	GATAG	C	3.804e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_Kr
3R	12709097	3R_12709097_SNP [dm3] 3R_16883375_SNP [dm6]	A	C	3.805e^-4	0.889	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	19467940	3L_19467940_SNP [dm3] 3L_19474840_SNP [dm6]	C	T	3.814e^-4	0.889	DOWNSTREAM CG18294 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2L	14297021	2L_14297021_SNP [dm3] 2L_14297021_SNP [dm6]	A	G	3.820e^-4	0.889	INTRON wb
2L	19734446	2L_19734446_SNP [dm3] 2L_19734446_SNP [dm6]	T	A	3.823e^-4	0.889	INTRON CG10462	TF binding site mE1_TFBS_sens
3L	9495592	3L_9495592_SNP [dm3] 3L_9502492_SNP [dm6]	T	C	3.823e^-4	0.889	INTRON path	TF binding site BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3L	6100256	3L_6100256_SNP [dm3] 3L_6107156_SNP [dm6]	A	C	3.825e^-4	0.889	INTRON Ets65A	TF binding site mE1_TFBS_cad
3R	25768224	3R_25768224_SNP [dm3] 3R_29942502_SNP [dm6]	C	T	3.834e^-4	0.889	INTRON CG15523
3R	25768253	3R_25768253_SNP [dm3] 3R_29942531_SNP [dm6]	T	A	3.834e^-4	0.889	INTRON CG15523
3L	4534444	3L_4534444_SNP [dm3] 3L_4534444_SNP [dm6]	C	A	3.837e^-4	0.889	INTRON CG11353
2R	17272223	2R_17272223_SNP [dm3] 2R_21384718_SNP [dm6]	C	T	3.839e^-4	0.889	SYNONYMOUS_CODING EfSec UPSTREAM CG10795	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	18378607	X_18378607_SNP [dm3] X_18484574_SNP [dm6]	A	T	3.840e^-4	0.889	UTR_3_PRIME psh UPSTREAM Hayan
3L	23590834	3L_23590834_SNP [dm3] 3L_23597734_SNP [dm6]	A	C	3.849e^-4	0.889	INTRON AGO3	transposable element FlyBase
2L	19840678	2L_19840678_SNP [dm3] 2L_19840678_SNP [dm6]	A	G	3.863e^-4	0.889	INTRON sick
2R	4613332	2R_4613332_SNP [dm3] 2R_8725827_SNP [dm6]	T	C	3.875e^-4	0.889	DOWNSTREAM snoRNA:gcl-a INTRON gcl	TF binding site mE1_TFBS_Trl
3R	10410917	3R_10410917_SNP [dm3] 3R_14585195_SNP [dm6]	A	T	3.877e^-4	0.889	INTRON stumps	TF binding site BDTNP1_TFBS_prd
3R	27129490	3R_27129490_SNP [dm3] 3R_31303768_SNP [dm6]	A	G	3.890e^-4	0.889	SYNONYMOUS_CODING CG11340	TF binding site mE1_TFBS_sens
3R	10974462	3R_10974462_SNP [dm3] 3R_15148740_SNP [dm6]	A	T	3.893e^-4	0.889	INTERGENIC
3L	4426019	3L_4426019_SNP [dm3] 3L_4426019_SNP [dm6]	C	A	3.896e^-4	0.889	SYNONYMOUS_CODING CG15020
2L	10636889	2L_10636889_SNP [dm3] 2L_10636889_SNP [dm6]	C	T	3.899e^-4	0.889	INTRON CG7329
3R	13483960	3R_13483960_SNP [dm3] 3R_17658238_SNP [dm6]	A	G	3.901e^-4	0.889	DOWNSTREAM tRNA:CR31575 INTRON CG14322
3R	13570405	3R_13570405_SNP [dm3] 3R_17744683_SNP [dm6]	A	C	3.911e^-4	0.889	INTRON TyrRII
3R	8359943	3R_8359943_SNP [dm3] 3R_12534221_SNP [dm6]	T	C	3.922e^-4	0.889	INTRON Octbeta3R
3R	27512855	3R_27512855_SNP [dm3] 3R_31687133_SNP [dm6]	A	G	3.931e^-4	0.889	DOWNSTREAM CR45564 INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site mE1_TFBS_Trl
2R	19712689	2R_19712689_SNP [dm3] 2R_23825166_SNP [dm6]	A	G	3.932e^-4	0.889	UPSTREAM CG4763 INTRON CG5549
2R	13238216	2R_13238216_SNP [dm3] 2R_17350711_SNP [dm6]	T	C	3.932e^-4	0.889	INTRON mbl
2R	16919632	2R_16919632_SNP [dm3] 2R_21032127_SNP [dm6]	G	A	3.932e^-4	0.889	INTERGENIC
3L	23723759	3L_23723759_SNP [dm3] 3L_23730659_SNP [dm6]	G	C	3.932e^-4	0.889	DOWNSTREAM CR45736 INTERGENIC	transposable element FlyBase
3L	3016469	3L_3016469_SNP [dm3] 3L_3016469_SNP [dm6]	G	C	3.933e^-4	0.889	NON_SYNONYMOUS_CODING CG32487 UPSTREAM CG32488
3L	18262635	3L_18262635_SNP [dm3] 3L_18269535_SNP [dm6]	T	A	3.935e^-4	0.889	INTERGENIC
3L	8453300	3L_8453300_INS [dm3] 3L_8460200_INS [dm6]	T	TTATAAACCT	3.943e^-4	0.889	INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	20606155	3R_20606155_SNP [dm3] 3R_24780433_SNP [dm6]	T	G	3.944e^-4	0.889	SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	16202443	3R_16202443_SNP [dm3] 3R_20376721_SNP [dm6]	C	A	3.948e^-4	0.889	INTERGENIC
2R	14627248	2R_14627248_SNP [dm3] 2R_18739743_SNP [dm6]	T	C	3.958e^-4	0.889	DOWNSTREAM CG33998 INTRON Hs3st-A EXON CR30121
2L	4225703	2L_4225703_SNP [dm3] 2L_4225703_SNP [dm6]	C	G	3.958e^-4	0.889	SYNONYMOUS_CODING CG3702	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3410460	3R_3410460_SNP [dm3] 3R_7584738_SNP [dm6]	A	C	3.962e^-4	0.889	INTRON CG34127
2R	11538671	2R_11538671_SNP [dm3] 2R_15651166_SNP [dm6]	G	T	3.964e^-4	0.889	DOWNSTREAM CG42524 INTRON CG42524
3R	26323383	3R_26323383_SNP [dm3] 3R_30497661_SNP [dm6]	C	A	3.965e^-4	0.889	SYNONYMOUS_CODING PH4alphaNE1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10147286	3L_10147286_SNP [dm3] 3L_10154186_SNP [dm6]	C	T	3.966e^-4	0.889	INTRON dpr10
2R	9356682	2R_9356682_SNP [dm3] 2R_13469177_SNP [dm6]	A	C	3.968e^-4	0.889	INTRON arr	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu
3L	18745686	3L_18745686_INS [dm3] 3L_18752586_INS [dm6]	A	AGTTGGTGGT	3.969e^-4	0.889	UTR_3_PRIME ftz-f1
3L	23736781	3L_23736781_SNP [dm3] 3L_23743681_SNP [dm6]	G	T	3.981e^-4	0.889	INTRON CG17698	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	18346603	3L_18346603_SNP [dm3] 3L_18353503_SNP [dm6]	G	T	3.983e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	2996239	3L_2996239_SNP [dm3] 3L_2996239_SNP [dm6]	A	G	3.985e^-4	0.889	DOWNSTREAM CG2113 INTERGENIC
3R	19736664	3R_19736664_SNP [dm3] 3R_23910942_SNP [dm6]	C	T	3.988e^-4	0.889	INTRON sba
2L	19744693	2L_19744693_SNP [dm3] 2L_19744693_SNP [dm6]	G	A	3.994e^-4	0.889	NON_SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_cad
3R	25759468	3R_25759468_SNP [dm3] 3R_29933746_SNP [dm6]	C	T	3.998e^-4	0.889	SYNONYMOUS_CODING CG42557 UTR_5_PRIME CG42558 UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	19429697	3L_19429697_SNP [dm3] 3L_19436597_SNP [dm6]	C	G	4.009e^-4	0.889	INTERGENIC
2R	15836747	2R_15836747_SNP [dm3] 2R_19949242_SNP [dm6]	G	T	4.016e^-4	0.889	INTERGENIC
2L	5816367	2L_5816367_DEL [dm3] 2L_5816367_DEL [dm6]	CG	C	4.022e^-4	0.889	INTERGENIC
2L	19089939	2L_19089939_SNP [dm3] 2L_19089939_SNP [dm6]	T	A	4.023e^-4	0.889	INTRON Lim3
2L	19741745	2L_19741745_SNP [dm3] 2L_19741745_SNP [dm6]	G	A	4.026e^-4	0.889	EXON CR44906	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12325098	2L_12325098_SNP [dm3] 2L_12325098_SNP [dm6]	C	T	4.027e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12772793	X_12772793_SNP [dm3] X_12878760_SNP [dm6]	T	A	4.036e^-4	0.889	INTRON Pde9
2R	9775436	2R_9775436_SNP [dm3] 2R_13887931_SNP [dm6]	G	A	4.041e^-4	0.889	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12527581	2L_12527581_SNP [dm3] 2L_12527581_SNP [dm6]	A	G	4.069e^-4	0.889	INTRON bun	TF binding site BDTNP1_TFBS_dl
2L	2703016	2L_2703016_SNP [dm3] 2L_2703016_SNP [dm6]	T	C	4.074e^-4	0.889	INTRON CG31690
3L	7106515	3L_7106515_INS [dm3] 3L_7113415_INS [dm6]	A	ACCG	4.085e^-4	0.889	INTRON form3
2R	15670929	2R_15670929_SNP [dm3] 2R_19783424_SNP [dm6]	A	T	4.093e^-4	0.889	UPSTREAM CR45231 DOWNSTREAM Obp56g INTERGENIC
2L	3434694	2L_3434694_SNP [dm3] 2L_3434694_SNP [dm6]	C	A	4.096e^-4	0.889	INTERGENIC
3L	1260057	3L_1260057_SNP [dm3] 3L_1260057_SNP [dm6]	T	C	4.100e^-4	0.889	INTRON CG9134
X	10895007	X_10895007_SNP [dm3] X_11000974_SNP [dm6]	A	G	4.106e^-4	0.889	INTRON CG42339
3L	1153544	3L_1153544_SNP [dm3] 3L_1153544_SNP [dm6]	T	C	4.111e^-4	0.889	INTRON bab2	TF binding site mE1_TFBS_cad
X	10908770	X_10908770_SNP [dm3] X_11014737_SNP [dm6]	G	T	4.112e^-4	0.889	INTRON CG42339
2L	2683133	2L_2683133_SNP [dm3] 2L_2683133_SNP [dm6]	C	T	4.118e^-4	0.889	INTRON CG31690
3R	27128046	3R_27128046_SNP [dm3] 3R_31302324_SNP [dm6]	C	T	4.122e^-4	0.889	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_inv
X	5507572	X_5507572_SNP [dm3] X_5613539_SNP [dm6]	G	A	4.130e^-4	0.889	SYNONYMOUS_CODING CG34435 DOWNSTREAM Vsx1	TF binding site mE1_TFBS_bab1
2R	12116981	2R_12116981_SNP [dm3] 2R_16229476_SNP [dm6]	C	T	4.143e^-4	0.889	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14326965	2L_14326965_SNP [dm3] 2L_14326965_SNP [dm6]	C	T	4.145e^-4	0.889	SYNONYMOUS_CODING wb DOWNSTREAM wb
X	17264950	X_17264950_SNP [dm3] X_17370917_SNP [dm6]	A	T	4.150e^-4	0.889	INTERGENIC
2L	12527657	2L_12527657_SNP [dm3] 2L_12527657_SNP [dm6]	T	A	4.152e^-4	0.889	INTRON bun	TF binding site BDTNP1_TFBS_dl
3L	16325160	3L_16325160_SNP [dm3] 3L_16332060_SNP [dm6]	G	A	4.155e^-4	0.889	NON_SYNONYMOUS_CODING retinin DOWNSTREAM CG33061 & 1 other	TF binding site mE1_TFBS_cad
X	9914255	X_9914255_SNP [dm3] X_10020222_SNP [dm6]	C	T	4.156e^-4	0.889	INTRON Cht6
3L	18262433	3L_18262433_SNP [dm3] 3L_18269333_SNP [dm6]	C	T	4.157e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	11854734	2L_11854734_SNP [dm3] 2L_11854734_SNP [dm6]	A	T	4.158e^-4	0.889	DOWNSTREAM CG42751 INTRON Pde1c
3L	8548292	3L_8548292_SNP [dm3] 3L_8555192_SNP [dm6]	A	G	4.165e^-4	0.889	INTRON rhea	TF binding site BDTNP1_TFBS_twi
2R	8410329	2R_8410329_SNP [dm3] 2R_12522824_SNP [dm6]	A	T	4.166e^-4	0.889	DOWNSTREAM CG33632 INTERGENIC
2L	11553223	2L_11553223_SNP [dm3] 2L_11553223_SNP [dm6]	C	T	4.167e^-4	0.889	INTERGENIC
2L	4512900	2L_4512900_SNP [dm3] 2L_4512900_SNP [dm6]	C	T	4.169e^-4	0.889	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2350619	2L_2350619_SNP [dm3] 2L_2350619_SNP [dm6]	G	A	4.172e^-4	0.889	INTRON CG9967 & 1 other
2R	4029952	2R_4029952_SNP [dm3] 2R_8142447_SNP [dm6]	G	A	4.184e^-4	0.889	UTR_5_PRIME Lpin UPSTREAM Lpin INTRON Lpin
2L	2036400	2L_2036400_SNP [dm3] 2L_2036400_SNP [dm6]	A	C	4.195e^-4	0.889	UPSTREAM CG42296 DOWNSTREAM lectin-22C INTERGENIC
3L	12420788	3L_12420788_SNP [dm3] 3L_12427688_SNP [dm6]	C	T	4.197e^-4	0.889	SYNONYMOUS_CODING toe	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	19806727	3R_19806727_INS [dm3] 3R_23981005_INS [dm6]	A	AGTAAAAACTTAAA...	4.220e^-4	0.889	DOWNSTREAM CG31140 INTRON CG31140
2R	15902341	2R_15902341_SNP [dm3] 2R_20014836_SNP [dm6]	G	A	4.220e^-4	0.889	DOWNSTREAM CR44629 INTERGENIC
3R	12743823	3R_12743823_SNP [dm3] 3R_16918101_SNP [dm6]	G	A	4.221e^-4	0.889	INTRON iab-8
X	2595381	X_2595381_SNP [dm3] X_2701348_SNP [dm6]	A	T	4.223e^-4	0.889	UTR_3_PRIME Csat DOWNSTREAM CG2662
3L	44258	3L_44258_SNP [dm3] 3L_44258_SNP [dm6]	A	G	4.242e^-4	0.889	INTERGENIC
2R	3792574	2R_3792574_SNP [dm3] 2R_7905069_SNP [dm6]	A	G	4.244e^-4	0.889	INTRON CG30377
X	3375366	X_3375366_SNP [dm3] X_3481333_SNP [dm6]	T	A	4.251e^-4	0.889	START_GAINED CG10804 UTR_5_PRIME CG10804 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	3022256	3L_3022256_SNP [dm3] 3L_3022256_SNP [dm6]	G	A	4.252e^-4	0.889	INTERGENIC
3R	13152210	3R_13152210_SNP [dm3] 3R_17326488_SNP [dm6]	A	T	4.253e^-4	0.889	INTRON beat-IIa
3L	12374768	3L_12374768_SNP [dm3] 3L_12381668_SNP [dm6]	G	C	4.258e^-4	0.889	INTRON Ncc69	TF binding site mE1_TFBS_inv
2R	3917860	2R_3917860_SNP [dm3] 2R_8030355_SNP [dm6]	G	A	4.262e^-4	0.889	UPSTREAM CR43724 & 1 other INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	10435085	3R_10435085_SNP [dm3] 3R_14609363_SNP [dm6]	G	T	4.262e^-4	0.889	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	24714392	3R_24714392_SNP [dm3] 3R_28888670_SNP [dm6]	T	G	4.263e^-4	0.889	UPSTREAM CG33203 & 1 other INTRON Doa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7125227	3L_7125227_SNP [dm3] 3L_7132127_SNP [dm6]	A	T	4.276e^-4	0.889	UPSTREAM Dbi DOWNSTREAM CG8628 INTRON Dbi	TF binding site BDTNP1_TFBS_da
3R	23480670	3R_23480670_SNP [dm3] 3R_27654948_SNP [dm6]	G	T	4.277e^-4	0.889	INTRON tau
2L	13863744	2L_13863744_SNP [dm3] 2L_13863744_SNP [dm6]	C	T	4.282e^-4	0.889	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11901071	3L_11901071_SNP [dm3] 3L_11907971_SNP [dm6]	T	A	4.282e^-4	0.889	INTRON CG44837
3L	11728415	3L_11728415_SNP [dm3] 3L_11735315_SNP [dm6]	C	T	4.289e^-4	0.889	UTR_3_PRIME CG6024 DOWNSTREAM CG6024
3L	18262442	3L_18262442_SNP [dm3] 3L_18269342_SNP [dm6]	A	G	4.296e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	1247387	3L_1247387_SNP [dm3] 3L_1247387_SNP [dm6]	C	T	4.308e^-4	0.889	SYNONYMOUS_CODING Psf1 UPSTREAM Sac1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	2350681	2L_2350681_SNP [dm3] 2L_2350681_SNP [dm6]	G	C	4.312e^-4	0.889	INTRON CG9967 & 1 other
2L	12442177	2L_12442177_SNP [dm3] 2L_12442177_SNP [dm6]	G	A	4.315e^-4	0.889	SYNONYMOUS_CODING Oatp33Ea DOWNSTREAM Elf
3R	26330952	3R_26330952_SNP [dm3] 3R_30505230_SNP [dm6]	A	G	4.317e^-4	0.889	SYNONYMOUS_CODING PH4alphaSG1 UPSTREAM CG15539
2L	8380855	2L_8380855_SNP [dm3] 2L_8380855_SNP [dm6]	C	T	4.319e^-4	0.889	SYNONYMOUS_CODING Aats-ala DOWNSTREAM CG13392	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	12730798	2R_12730798_SNP [dm3] 2R_16843293_SNP [dm6]	C	A	4.332e^-4	0.889	DOWNSTREAM Ugt37c1 INTERGENIC
2L	19798565	2L_19798565_SNP [dm3] 2L_19798565_SNP [dm6]	T	G	4.340e^-4	0.889	INTRON sick
3L	9555349	3L_9555349_SNP [dm3] 3L_9562249_SNP [dm6]	A	G	4.342e^-4	0.889	INTRON CG42673
2L	7452091	2L_7452091_SNP [dm3] 2L_7452091_SNP [dm6]	C	G	4.365e^-4	0.889	UPSTREAM santa-maria DOWNSTREAM Gr28a INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3L	21548736	3L_21548736_SNP [dm3] 3L_21555636_SNP [dm6]	T	G	4.367e^-4	0.889	UTR_3_PRIME CG7173 UPSTREAM Wnk
3L	4545925	3L_4545925_SNP [dm3] 3L_4545925_SNP [dm6]	C	A	4.378e^-4	0.889	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	15839122	2R_15839122_SNP [dm3] 2R_19951617_SNP [dm6]	G	A	4.382e^-4	0.889	SYNONYMOUS_CODING CG10822
3R	26933044	3R_26933044_SNP [dm3] 3R_31107322_SNP [dm6]	A	T	4.386e^-4	0.889	SYNONYMOUS_CODING CG11318	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19741420	2L_19741420_SNP [dm3] 2L_19741420_SNP [dm6]	C	G	4.389e^-4	0.889	EXON CR44906	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	13505970	2R_13505970_SNP [dm3] 2R_17618465_SNP [dm6]	C	A	4.392e^-4	0.889	UPSTREAM CG44403 INTRON CG10936
3R	10786018	3R_10786018_SNP [dm3] 3R_14960296_SNP [dm6]	G	A	4.395e^-4	0.889	INTERGENIC
2R	11612938	2R_11612938_SNP [dm3] 2R_15725433_SNP [dm6]	A	G	4.401e^-4	0.889	INTERGENIC
3L	9554651	3L_9554651_SNP [dm3] 3L_9561551_SNP [dm6]	A	C	4.401e^-4	0.889	INTRON CG42673
3L	14828466	3L_14828466_SNP [dm3] 3L_14835366_SNP [dm6]	A	T	4.412e^-4	0.889	INTRON CG17839
2R	17879855	2R_17879855_SNP [dm3] 2R_21992350_SNP [dm6]	C	G	4.415e^-4	0.889	INTRON CG34370
X	19871242	X_19871242_SNP [dm3] X_19977209_SNP [dm6]	A	G	4.417e^-4	0.889	INTERGENIC
2R	15728206	2R_15728206_INS [dm3] 2R_19840701_INS [dm6]	A	AA	4.418e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
X	20656481	X_20656481_SNP [dm3] X_20785454_SNP [dm6]	A	G	4.437e^-4	0.889	INTRON shakB
2L	12418606	2L_12418606_SNP [dm3] 2L_12418606_SNP [dm6]	C	T	4.439e^-4	0.889	INTRON vir-1
3R	13103827	3R_13103827_SNP [dm3] 3R_17278105_SNP [dm6]	C	A	4.446e^-4	0.889	INTERGENIC
3L	40202	3L_40202_SNP [dm3] 3L_40202_SNP [dm6]	G	C	4.449e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	21321155	3R_21321155_SNP [dm3] 3R_25495433_SNP [dm6]	A	T	4.452e^-4	0.889	UPSTREAM CG33494 DOWNSTREAM CR44948 INTERGENIC	transposable element FlyBase
2R	12972050	2R_12972050_DEL [dm3] 2R_17084545_DEL [dm6]	ATA	A	4.452e^-4	0.889	INTRON CG30460	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8582618	3L_8582618_SNP [dm3] 3L_8589518_SNP [dm6]	T	C	4.453e^-4	0.889	UPSTREAM CG43078 INTRON CG43078
3L	20176231	3L_20176231_SNP [dm3] 3L_20183131_SNP [dm6]	T	A	4.458e^-4	0.889	INTRON CG42674	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15839140	2R_15839140_SNP [dm3] 2R_19951635_SNP [dm6]	C	T	4.461e^-4	0.889	SYNONYMOUS_CODING CG10822
3L	22661876	3L_22661876_SNP [dm3] 3L_22668776_SNP [dm6]	G	A	4.464e^-4	0.889	DOWNSTREAM mir-958 INTRON CR43270
2L	7994836	2L_7994836_SNP [dm3] 2L_7994836_SNP [dm6]	T	A	4.470e^-4	0.889	UTR_3_PRIME CG7227 UPSTREAM pes DOWNSTREAM CG7227 EXON CR44996	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
3R	4331830	3R_4331830_SNP [dm3] 3R_8506108_SNP [dm6]	C	T	4.482e^-4	0.889	INTERGENIC	TF binding site mE1_TFBS_cad
X	18378560	X_18378560_SNP [dm3] X_18484527_SNP [dm6]	C	G	4.486e^-4	0.889	UTR_3_PRIME psh UPSTREAM Hayan
2R	19548034	2R_19548034_SNP [dm3] 2R_23660511_SNP [dm6]	T	G	4.490e^-4	0.889	UTR_5_PRIME Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	5064347	X_5064347_SNP [dm3] X_5170314_SNP [dm6]	A	C	4.493e^-4	0.889	INTRON rg & 1 other
3L	5129042	3L_5129042_SNP [dm3] 3L_5135942_SNP [dm6]	G	A	4.498e^-4	0.889	SYNONYMOUS_CODING CG10674 UPSTREAM CG4611 DOWNSTREAM CG4603 EXON CR45160	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	9147010	2R_9147010_SNP [dm3] 2R_13259505_SNP [dm6]	T	G	4.500e^-4	0.889	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2R	14127159	2R_14127159_SNP [dm3] 2R_18239654_SNP [dm6]	G	A	4.513e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	21763435	2L_21763435_SNP [dm3] 2L_21763435_SNP [dm6]	A	T	4.516e^-4	0.889	INTRON CG31612
3R	14797319	3R_14797319_SNP [dm3] 3R_18971597_SNP [dm6]	T	C	4.518e^-4	0.889	INTRON CG42613 & 1 other
X	21906383	X_21906383_SNP [dm3] X_22504547_SNP [dm6]	C	T	4.527e^-4	0.889	DOWNSTREAM l_1_G0196 INTRON l_1_G0196
3L	12682706	3L_12682706_SNP [dm3] 3L_12689606_SNP [dm6]	A	G	4.531e^-4	0.889	INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	1205672	2L_1205672_INS [dm3] 2L_1205672_INS [dm6]	A	AAGCCA	4.535e^-4	0.889	DOWNSTREAM CG14342 INTERGENIC
X	19873194	X_19873194_INS [dm3] X_19979161_INS [dm6]	T	TT	4.537e^-4	0.889	INTERGENIC
2L	15283193	2L_15283193_SNP [dm3] 2L_15283193_SNP [dm6]	G	A	4.538e^-4	0.889	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12391562	3L_12391562_SNP [dm3] 3L_12398462_SNP [dm6]	A	T	4.568e^-4	0.889	INTRON CG32104
3L	6100265	3L_6100265_SNP [dm3] 3L_6107165_SNP [dm6]	C	T	4.577e^-4	0.889	INTRON Ets65A	TF binding site mE1_TFBS_cad
2L	7338811	2L_7338811_SNP [dm3] 2L_7338811_SNP [dm6]	A	T	4.579e^-4	0.889	INTRON Wnt6
3R	13451266	3R_13451266_SNP [dm3] 3R_17625544_SNP [dm6]	C	T	4.581e^-4	0.889	UPSTREAM tRNA:T:90Ca & 1 other INTRON AttD
2R	11933554	2R_11933554_SNP [dm3] 2R_16046049_SNP [dm6]	C	A	4.581e^-4	0.889	UTR_3_PRIME SP2353
X	11036889	X_11036889_SNP [dm3] X_11142856_SNP [dm6]	A	G	4.581e^-4	0.889	INTRON CG15202
3R	17555395	3R_17555395_SNP [dm3] 3R_21729673_SNP [dm6]	C	T	4.587e^-4	0.889	EXON CR43096
2L	6572955	2L_6572955_SNP [dm3] 2L_6572955_SNP [dm6]	A	T	4.594e^-4	0.889	INTRON CG11319
3L	22204252	3L_22204252_SNP [dm3] 3L_22211152_SNP [dm6]	A	T	4.595e^-4	0.889	INTRON olf413	TF binding site mE1_TFBS_HSA
2R	12699223	2R_12699223_SNP [dm3] 2R_16811718_SNP [dm6]	G	C	4.597e^-4	0.889	UPSTREAM CR44379 DOWNSTREAM CR44465 INTERGENIC
2L	6895777	2L_6895777_SNP [dm3] 2L_6895777_SNP [dm6]	A	T	4.598e^-4	0.889	INTRON Nlg2
3R	16208233	3R_16208233_SNP [dm3] 3R_20382511_SNP [dm6]	G	A	4.603e^-4	0.889	INTRON Gfrl
3R	10974434	3R_10974434_SNP [dm3] 3R_15148712_SNP [dm6]	T	C	4.606e^-4	0.889	INTERGENIC
3L	14313189	3L_14313189_SNP [dm3] 3L_14320089_SNP [dm6]	A	G	4.607e^-4	0.889	INTRON fz
2L	12442178	2L_12442178_SNP [dm3] 2L_12442178_SNP [dm6]	C	T	4.613e^-4	0.889	SYNONYMOUS_CODING Oatp33Ea DOWNSTREAM Elf
2R	6260988	2R_6260988_SNP [dm3] 2R_10373483_SNP [dm6]	C	T	4.614e^-4	0.889	INTRON CG42732
X	8678952	X_8678952_SNP [dm3] X_8784919_SNP [dm6]	T	C	4.621e^-4	0.889	INTRON Lim1
3L	14845439	3L_14845439_DEL [dm3] 3L_14852339_DEL [dm6]	TCCGCATT	T	4.621e^-4	0.889	INTRON CG17839
3R	24716655	3R_24716655_SNP [dm3] 3R_28890933_SNP [dm6]	A	G	4.622e^-4	0.889	UPSTREAM Doa INTRON Doa
2R	18542511	2R_18542511_SNP [dm3] 2R_22655006_SNP [dm6]	A	G	4.627e^-4	0.889	SYNONYMOUS_CODING CG30196 UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7081477	2R_7081477_SNP [dm3] 2R_11193972_SNP [dm6]	C	T	4.629e^-4	0.889	INTRON shn
2L	19731233	2L_19731233_SNP [dm3] 2L_19731233_SNP [dm6]	G	A	4.637e^-4	0.889	UTR_3_PRIME Lar DOWNSTREAM CG10462
2R	12402163	2R_12402163_SNP [dm3] 2R_16514658_SNP [dm6]	C	T	4.649e^-4	0.889	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	21498203	3L_21498203_SNP [dm3] 3L_21505103_SNP [dm6]	C	A	4.669e^-4	0.889	NON_SYNONYMOUS_CODING Glg1	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	21516559	3L_21516559_SNP [dm3] 3L_21523459_SNP [dm6]	G	T	4.669e^-4	0.889	UTR_5_PRIME CG7611 DOWNSTREAM Cdk12 INTRON CG7611	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	17903053	3L_17903053_SNP [dm3] 3L_17909953_SNP [dm6]	C	A	4.672e^-4	0.889	NON_SYNONYMOUS_CODING CG5290 DOWNSTREAM CG14353
X	17406438	X_17406438_SNP [dm3] X_17512405_SNP [dm6]	G	C	4.677e^-4	0.889	INTRON CG43658	TF binding site BDTNP1_TFBS_z
X	6796982	X_6796982_SNP [dm3] X_6902949_SNP [dm6]	C	A	4.689e^-4	0.889	INTERGENIC
2R	10955671	2R_10955671_SNP [dm3] 2R_15068166_SNP [dm6]	G	T	4.689e^-4	0.889	INTERGENIC
2L	7876373	2L_7876373_SNP [dm3] 2L_7876373_SNP [dm6]	C	T	4.692e^-4	0.889	INTRON spz3
X	1967932	X_1967932_SNP [dm3] X_2073899_SNP [dm6]	A	C	4.697e^-4	0.889	SYNONYMOUS_CODING CG4061 UPSTREAM CG4199 DOWNSTREAM CG4045	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12851933	2L_12851933_SNP [dm3] 2L_12851933_SNP [dm6]	T	A	4.699e^-4	0.889	INTERGENIC	TF binding site mE1_TFBS_inv
3R	16193152	3R_16193152_SNP [dm3] 3R_20367430_SNP [dm6]	A	C	4.701e^-4	0.889	INTERGENIC
3R	15548549	3R_15548549_SNP [dm3] 3R_19722827_SNP [dm6]	C	A	4.703e^-4	0.889	INTERGENIC
3R	10974480	3R_10974480_SNP [dm3] 3R_15148758_SNP [dm6]	C	T	4.715e^-4	0.889	INTERGENIC
X	3377604	X_3377604_SNP [dm3] X_3483571_SNP [dm6]	C	T	4.722e^-4	0.889	SYNONYMOUS_CODING CG10802 INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	13589061	2R_13589061_SNP [dm3] 2R_17701556_SNP [dm6]	T	C	4.722e^-4	0.889	UPSTREAM snoRNA:snR38:54Eb & 3 others DOWNSTREAM snoRNA:U29:54Ec & 4 others INTRON Uhg1
2R	17930865	2R_17930865_SNP [dm3] 2R_22043360_SNP [dm6]	A	G	4.723e^-4	0.889	UPSTREAM PpD5 INTERGENIC
3R	15483232	3R_15483232_SNP [dm3] 3R_19657510_SNP [dm6]	C	T	4.724e^-4	0.889	INTRON CG6184
2R	13770688	2R_13770688_SNP [dm3] 2R_17883183_SNP [dm6]	A	T	4.731e^-4	0.889	UPSTREAM CG30110 INTRON Elk
2L	7338482	2L_7338482_SNP [dm3] 2L_7338482_SNP [dm6]	A	G	4.738e^-4	0.889	INTRON Wnt6
2L	13610291	2L_13610291_SNP [dm3] 2L_13610291_SNP [dm6]	C	T	4.742e^-4	0.889	NON_SYNONYMOUS_CODING kuz DOWNSTREAM mir-2489
3L	14905152	3L_14905152_SNP [dm3] 3L_14912052_SNP [dm6]	C	T	4.751e^-4	0.889	INTRON DCX-EMAP
3L	411991	3L_411991_SNP [dm3] 3L_411991_SNP [dm6]	A	T	4.755e^-4	0.889	INTERGENIC
2R	11637322	2R_11637322_SNP [dm3] 2R_15749817_SNP [dm6]	G	T	4.755e^-4	0.889	INTRON CG30089
3R	4938909	3R_4938909_INS [dm3] 3R_9113187_INS [dm6]	A	AGGAACGTTTTGAA...	4.755e^-4	0.889	INTRON pum
X	12109362	X_12109362_SNP [dm3] X_12215329_SNP [dm6]	A	G	4.758e^-4	0.889	INTRON Ten-a
3R	12709063	3R_12709063_SNP [dm3] 3R_16883341_SNP [dm6]	A	T	4.760e^-4	0.889	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	2052095	2L_2052095_SNP [dm3] 2L_2052095_SNP [dm6]	C	A	4.769e^-4	0.889	INTERGENIC
2L	7147769	2L_7147769_SNP [dm3] 2L_7147769_SNP [dm6]	G	T	4.771e^-4	0.889	INTRON Pvf3	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	17319760	3R_17319760_SNP [dm3] 3R_21494038_SNP [dm6]	C	A	4.772e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14086341	2R_14086341_SNP [dm3] 2R_18198836_SNP [dm6]	A	G	4.774e^-4	0.889	INTERGENIC
2R	12730819	2R_12730819_SNP [dm3] 2R_16843314_SNP [dm6]	T	A	4.778e^-4	0.889	UTR_3_PRIME Ugt37c1
2L	19796032	2L_19796032_SNP [dm3] 2L_19796032_SNP [dm6]	G	T	4.780e^-4	0.889	UPSTREAM sick & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
X	6747608	X_6747608_SNP [dm3] X_6853575_SNP [dm6]	T	C	4.782e^-4	0.889	UPSTREAM CG14434 INTRON CG14434	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	291856	2L_291856_SNP [dm3] 2L_291856_SNP [dm6]	G	A	4.782e^-4	0.889	UPSTREAM CG11562 & 1 other INTERGENIC
2R	11635388	2R_11635388_SNP [dm3] 2R_15747883_SNP [dm6]	G	A	4.783e^-4	0.889	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14859049	X_14859049_INS [dm3] X_14965016_INS [dm6]	C	CTATAAATTTGC...	4.783e^-4	0.889	INTRON eag
X	8215537	X_8215537_SNP [dm3] X_8321504_SNP [dm6]	C	A	4.785e^-4	0.889	INTRON nAChRalpha3
3R	26933574	3R_26933574_SNP [dm3] 3R_31107852_SNP [dm6]	G	A	4.793e^-4	0.889	INTRON CG11318
2R	11571935	2R_11571935_SNP [dm3] 2R_15684430_SNP [dm6]	G	T	4.797e^-4	0.889	SYNONYMOUS_CODING Ranbp11 DOWNSTREAM CG30082 EXON CR43429	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	22204157	3L_22204157_SNP [dm3] 3L_22211057_SNP [dm6]	C	T	4.801e^-4	0.889	INTRON olf413	TF binding site mE1_TFBS_HSA
2L	10137758	2L_10137758_SNP [dm3] 2L_10137758_SNP [dm6]	T	A	4.804e^-4	0.889	INTRON CG44153
2L	9463855	2L_9463855_SNP [dm3] 2L_9463855_SNP [dm6]	C	T	4.805e^-4	0.889	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_kn
2L	6791647	2L_6791647_SNP [dm3] 2L_6791647_SNP [dm6]	C	A	4.810e^-4	0.889	INTRON nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2836985	2L_2836985_SNP [dm3] 2L_2836985_SNP [dm6]	G	A	4.814e^-4	0.889	INTRON CG3119
2L	19241897	2L_19241897_SNP [dm3] 2L_19241897_SNP [dm6]	A	G	4.816e^-4	0.889	INTERGENIC
2L	10327549	2L_10327549_SNP [dm3] 2L_10327549_SNP [dm6]	C	T	4.818e^-4	0.889	DOWNSTREAM CG5375 INTRON RnrL

By genomic position
Variant impact
Gene name

Wing_Intervein_Area1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results