DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.464e^-2)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.07769

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	6.0275	0.0491

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2628 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	16202334	3L_16202334_SNP [dm3] 3L_16209234_SNP [dm6]	A	T	6.782e^-9	0.005	INTERGENIC	TF binding site mE1_TFBS_cad
3L	16202321	3L_16202321_SNP [dm3] 3L_16209221_SNP [dm6]	G	T	8.546e^-9	0.005	INTERGENIC	TF binding site mE1_TFBS_cad
3L	711857	3L_711857_SNP [dm3] 3L_711857_SNP [dm6]	A	C	9.846e^-9	0.005	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	712399	3L_712399_SNP [dm3] 3L_712399_SNP [dm6]	A	T	1.007e^-8	0.005	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	711790	3L_711790_SNP [dm3] 3L_711790_SNP [dm6]	A	T	2.685e^-8	0.007	UTR_5_PRIME CG13896	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	16202369	3L_16202369_SNP [dm3] 3L_16209269_SNP [dm6]	G	A	2.728e^-8	0.007	INTERGENIC	TF binding site mE1_TFBS_cad
3L	712388	3L_712388_DEL [dm3] 3L_712388_DEL [dm6]	AAT	A	3.098e^-8	0.007	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712423	3L_712423_SNP [dm3] 3L_712423_SNP [dm6]	G	C	3.332e^-8	0.007	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712385	3L_712385_DEL [dm3] 3L_712385_DEL [dm6]	TA	T	3.430e^-8	0.007	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712376	3L_712376_SNP [dm3] 3L_712376_SNP [dm6]	G	A	4.153e^-8	0.008	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712348	3L_712348_SNP [dm3] 3L_712348_SNP [dm6]	G	T	4.823e^-8	0.008	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712337	3L_712337_SNP [dm3] 3L_712337_SNP [dm6]	G	T	5.438e^-8	0.008	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712377	3L_712377_SNP [dm3] 3L_712377_SNP [dm6]	A	C	5.548e^-8	0.008	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712235	3L_712235_SNP [dm3] 3L_712235_SNP [dm6]	C	T	5.909e^-8	0.008	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	712335	3L_712335_SNP [dm3] 3L_712335_SNP [dm6]	T	A	7.930e^-8	0.01	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712384	3L_712384_SNP [dm3] 3L_712384_SNP [dm6]	T	C	9.024e^-8	0.011	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712226	3L_712226_SNP [dm3] 3L_712226_SNP [dm6]	C	A	1.034e^-7	0.011	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	712374	3L_712374_SNP [dm3] 3L_712374_SNP [dm6]	G	C	1.201e^-7	0.013	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712319	3L_712319_INS [dm3] 3L_712319_INS [dm6]	C	CA	1.632e^-7	0.015	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712342	3L_712342_SNP [dm3] 3L_712342_SNP [dm6]	A	T	1.632e^-7	0.015	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712343	3L_712343_SNP [dm3] 3L_712343_SNP [dm6]	A	C	1.670e^-7	0.015	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712455	3L_712455_SNP [dm3] 3L_712455_SNP [dm6]	C	T	2.303e^-7	0.02	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712323	3L_712323_SNP [dm3] 3L_712323_SNP [dm6]	T	A	3.321e^-7	0.027	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	16289150	2R_16289150_SNP [dm3] 2R_20401645_SNP [dm6]	G	A	5.544e^-7	0.043	INTERGENIC
3L	16202346	3L_16202346_SNP [dm3] 3L_16209246_SNP [dm6]	C	T	6.060e^-7	0.045	INTERGENIC	TF binding site mE1_TFBS_cad
3L	712322	3L_712322_SNP [dm3] 3L_712322_SNP [dm6]	A	G	6.937e^-7	0.05	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	5862491	2L_5862491_SNP [dm3] 2L_5862491_SNP [dm6]	C	T	1.427e^-6	0.099	INTRON rau
3L	8207850	3L_8207850_SNP [dm3] 3L_8214750_SNP [dm6]	T	C	1.533e^-6	0.103	UPSTREAM CG8012 INTERGENIC
3L	712501	3L_712501_SNP [dm3] 3L_712501_SNP [dm6]	C	G	2.304e^-6	0.149	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	15483333	3L_15483333_SNP [dm3] 3L_15490233_SNP [dm6]	T	C	2.415e^-6	0.151	INTERGENIC
3L	19667126	3L_19667126_SNP [dm3] 3L_19674026_SNP [dm6]	T	C	2.530e^-6	0.153	INTERGENIC
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	2.606e^-6	0.153	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	712622	3L_712622_SNP [dm3] 3L_712622_SNP [dm6]	G	A	2.966e^-6	0.163	UPSTREAM CG13896 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	9817339	3R_9817339_SNP [dm3] 3R_13991617_SNP [dm6]	A	T	2.973e^-6	0.163	INTRON rdx
3R	9817342	3R_9817342_INS [dm3] 3R_13991620_INS [dm6]	C	CCATG	3.126e^-6	0.163	INTRON rdx
3R	9817346	3R_9817346_INS [dm3] 3R_13991624_INS [dm6]	T	TGATT	3.126e^-6	0.163	INTRON rdx
3R	13570329	3R_13570329_SNP [dm3] 3R_17744607_SNP [dm6]	A	C	4.362e^-6	0.221	INTRON TyrRII	TF binding site mE1_TFBS_cad
3R	9817323	3R_9817323_SNP [dm3] 3R_13991601_SNP [dm6]	T	A	4.541e^-6	0.224	INTRON rdx
3R	22160103	3R_22160103_SNP [dm3] 3R_26334381_SNP [dm6]	A	T	5.000e^-6	0.24	INTRON CG33970
3L	712066	3L_712066_SNP [dm3] 3L_712066_SNP [dm6]	G	A	5.403e^-6	0.253	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	3603547	2R_3603547_SNP [dm3] 2R_7716042_SNP [dm6]	T	G	6.525e^-6	0.298	NON_SYNONYMOUS_CODING CG1946 DOWNSTREAM CG18812	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	2693041	3R_2693041_SNP [dm3] 3R_6867319_SNP [dm6]	G	A	7.139e^-6	0.319	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	3965610	3R_3965610_SNP [dm3] 3R_8139888_SNP [dm6]	T	C	8.322e^-6	0.363	UPSTREAM tRNA:N5:84F DOWNSTREAM tRNA:R2:84Fe & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	4093930	X_4093930_SNP [dm3] X_4199897_SNP [dm6]	T	C	9.502e^-6	0.403	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	16245081	3L_16245081_SNP [dm3] 3L_16251981_SNP [dm6]	G	T	9.681e^-6	0.403	SYNONYMOUS_CODING CG13055	TF binding site mE1_TFBS_chinmo
3L	677700	3L_677700_SNP [dm3] 3L_677700_SNP [dm6]	T	A	1.053e^-5	0.429	DOWNSTREAM CG17129 INTERGENIC
3R	3806287	3R_3806287_SNP [dm3] 3R_7980565_SNP [dm6]	T	A	1.199e^-5	0.478	UPSTREAM Sfp84E DOWNSTREAM Os-C INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9287766	X_9287766_SNP [dm3] X_9393733_SNP [dm6]	T	C	1.253e^-5	0.478	INTRON mgl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	21946768	X_21946768_SNP [dm3] X_22544932_SNP [dm6]	T	C	1.316e^-5	0.478	UPSTREAM CG17599 INTERGENIC
2L	14695058	2L_14695058_SNP [dm3] 2L_14695058_SNP [dm6]	G	A	1.319e^-5	0.478	INTERGENIC
3R	14368783	3R_14368783_SNP [dm3] 3R_18543061_SNP [dm6]	A	G	1.363e^-5	0.478	INTRON fru
2L	19841437	2L_19841437_SNP [dm3] 2L_19841437_SNP [dm6]	G	A	1.381e^-5	0.478	INTRON sick
2L	19816618	2L_19816618_SNP [dm3] 2L_19816618_SNP [dm6]	G	A	1.424e^-5	0.478	UPSTREAM snRNA:U2:38ABa DOWNSTREAM snRNA:U5:38ABb INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	9817331	3R_9817331_SNP [dm3] 3R_13991609_SNP [dm6]	T	G	1.441e^-5	0.478	INTRON rdx
3R	10437015	3R_10437015_SNP [dm3] 3R_14611293_SNP [dm6]	A	T	1.450e^-5	0.478	INTRON CG14853
X	13137038	X_13137038_SNP [dm3] X_13243005_SNP [dm6]	A	G	1.535e^-5	0.478	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	19816621	2L_19816621_SNP [dm3] 2L_19816621_SNP [dm6]	A	G	1.571e^-5	0.478	UPSTREAM snRNA:U2:38ABa DOWNSTREAM snRNA:U5:38ABb INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	6962276	2R_6962276_SNP [dm3] 2R_11074771_SNP [dm6]	A	G	1.590e^-5	0.478	INTRON luna
3L	15483312	3L_15483312_SNP [dm3] 3L_15490212_SNP [dm6]	A	G	1.592e^-5	0.478	INTERGENIC
3R	12970762	3R_12970762_SNP [dm3] 3R_17145040_SNP [dm6]	A	T	1.607e^-5	0.478	UTR_3_PRIME m-cup DOWNSTREAM m-cup
3R	14972052	3R_14972052_SNP [dm3] 3R_19146330_SNP [dm6]	A	G	1.612e^-5	0.478	INTRON Ppcs
2R	11575711	2R_11575711_SNP [dm3] 2R_15688206_SNP [dm6]	G	T	1.656e^-5	0.478	NON_SYNONYMOUS_CODING Cep89 SPLICE_SITE_REGION Cep89 DOWNSTREAM Ranbp11	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	13137037	X_13137037_SNP [dm3] X_13243004_SNP [dm6]	C	T	1.656e^-5	0.478	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	4093939	X_4093939_SNP [dm3] X_4199906_SNP [dm6]	A	C	1.728e^-5	0.478	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	7461509	3L_7461509_SNP [dm3] 3L_7468409_SNP [dm6]	G	T	1.795e^-5	0.478	UTR_3_PRIME CG42660 & 2 others
2L	9487588	2L_9487588_SNP [dm3] 2L_9487588_SNP [dm6]	A	G	1.796e^-5	0.478	INTERGENIC
2L	20991674	2L_20991674_SNP [dm3] 2L_20991674_SNP [dm6]	C	A	1.800e^-5	0.478	INTRON CG42238
2R	6016574	2R_6016574_SNP [dm3] 2R_10129069_SNP [dm6]	G	A	1.818e^-5	0.478	INTRON gem	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	711108	3L_711108_SNP [dm3] 3L_711108_SNP [dm6]	G	T	1.838e^-5	0.478	NON_SYNONYMOUS_CODING CG13896 UPSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
2R	3599792	2R_3599792_SNP [dm3] 2R_7712287_SNP [dm6]	A	G	1.869e^-5	0.478	UPSTREAM CG1942 DOWNSTREAM mir-4909 & 1 other INTERGENIC
2L	5777937	2L_5777937_SNP [dm3] 2L_5777937_SNP [dm6]	G	A	1.873e^-5	0.478	INTRON CG9171	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	10343861	2R_10343861_SNP [dm3] 2R_14456356_SNP [dm6]	T	G	1.889e^-5	0.478	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3825068	2L_3825068_SNP [dm3] 2L_3825068_SNP [dm6]	T	G	1.914e^-5	0.478	UPSTREAM slp1 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	17696524	2R_17696524_SNP [dm3] 2R_21809019_SNP [dm6]	T	C	1.929e^-5	0.478	INTERGENIC
3L	713048	3L_713048_SNP [dm3] 3L_713048_SNP [dm6]	G	C	1.935e^-5	0.478	INTERGENIC	TF binding site mE1_TFBS_sens
X	9638379	X_9638379_SNP [dm3] X_9744346_SNP [dm6]	T	C	1.937e^-5	0.478	INTRON Sp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	2989486	3R_2989486_SNP [dm3] 3R_7163764_SNP [dm6]	C	G	2.175e^-5	0.516	INTRON sas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15483205	3L_15483205_SNP [dm3] 3L_15490105_SNP [dm6]	G	A	2.181e^-5	0.516	INTERGENIC
3R	10436941	3R_10436941_SNP [dm3] 3R_14611219_SNP [dm6]	G	C	2.200e^-5	0.516	INTRON CG14853
2R	18278806	2R_18278806_SNP [dm3] 2R_22391301_SNP [dm6]	A	G	2.304e^-5	0.516	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19835455	2L_19835455_SNP [dm3] 2L_19835455_SNP [dm6]	A	C	2.308e^-5	0.516	INTRON sick
3R	9817312	3R_9817312_SNP [dm3] 3R_13991590_SNP [dm6]	A	G	2.363e^-5	0.516	INTRON rdx	TF binding site mE1_TFBS_cad
3R	26195343	3R_26195343_SNP [dm3] 3R_30369621_SNP [dm6]	T	A	2.368e^-5	0.516	UTR_3_PRIME hdc
3R	24353994	3R_24353994_SNP [dm3] 3R_28528272_SNP [dm6]	G	A	2.375e^-5	0.516	NON_SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8518986	3L_8518986_SNP [dm3] 3L_8525886_SNP [dm6]	A	C	2.384e^-5	0.516	INTRON foi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	15483234	3L_15483234_SNP [dm3] 3L_15490134_SNP [dm6]	A	C	2.403e^-5	0.516	INTERGENIC
3L	13557427	3L_13557427_INS [dm3] 3L_13564327_INS [dm6]	G	TA	2.421e^-5	0.516	INTRON bru-3
3L	13557430	3L_13557430_DEL [dm3] 3L_13564330_DEL [dm6]	GTTT	G	2.421e^-5	0.516	INTRON bru-3
2L	22909511	2L_22909511_SNP [dm3] 2L_23016779_SNP [dm6]	G	A	2.451e^-5	0.516	INTRON Cht3
2R	10090612	2R_10090612_SNP [dm3] 2R_14203107_SNP [dm6]	T	C	2.519e^-5	0.521	SYNONYMOUS_CODING Sox15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15483232	3L_15483232_SNP [dm3] 3L_15490132_SNP [dm6]	A	T	2.569e^-5	0.521	INTERGENIC
3R	13682419	3R_13682419_SNP [dm3] 3R_17856697_SNP [dm6]	T	C	2.584e^-5	0.521	INTRON tinc
3R	13682437	3R_13682437_SNP [dm3] 3R_17856715_SNP [dm6]	G	C	2.584e^-5	0.521	INTRON tinc
3R	24412989	3R_24412989_SNP [dm3] 3R_28587267_SNP [dm6]	T	C	2.621e^-5	0.523	EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
X	21946828	X_21946828_SNP [dm3] X_22544992_SNP [dm6]	A	G	2.868e^-5	0.552	UPSTREAM CG17599 INTERGENIC
3L	7479975	3L_7479975_SNP [dm3] 3L_7486875_SNP [dm6]	T	C	2.889e^-5	0.552	SYNONYMOUS_CODING mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10969436	3L_10969436_SNP [dm3] 3L_10976336_SNP [dm6]	A	T	2.978e^-5	0.552	INTERGENIC	TF binding site mE1_TFBS_cad
X	16154167	X_16154167_SNP [dm3] X_16260134_SNP [dm6]	T	A	2.991e^-5	0.552	INTERGENIC
2R	6016548	2R_6016548_SNP [dm3] 2R_10129043_SNP [dm6]	C	T	3.006e^-5	0.552	INTRON gem	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	9685669	3L_9685669_SNP [dm3] 3L_9692569_SNP [dm6]	A	G	3.045e^-5	0.552	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	10627152	3L_10627152_SNP [dm3] 3L_10634052_SNP [dm6]	C	T	3.049e^-5	0.552	DOWNSTREAM E_z_ & 1 other INTRON CG34001
3L	9686786	3L_9686786_SNP [dm3] 3L_9693686_SNP [dm6]	C	T	3.051e^-5	0.552	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	25973021	3R_25973021_SNP [dm3] 3R_30147299_SNP [dm6]	T	C	3.055e^-5	0.552	INTRON AdoR
X	2310890	X_2310890_SNP [dm3] X_2416857_SNP [dm6]	C	G	3.078e^-5	0.552	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3131466	2L_3131466_SNP [dm3] 2L_3131466_SNP [dm6]	T	C	3.122e^-5	0.552	INTRON toc
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	3.180e^-5	0.552	EXON CR44950
3R	3966140	3R_3966140_SNP [dm3] 3R_8140418_SNP [dm6]	A	C	3.182e^-5	0.552	UPSTREAM tRNA:N5:84F & 2 others DOWNSTREAM tRNA:R2:84Fc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	15895805	2R_15895805_SNP [dm3] 2R_20008300_SNP [dm6]	T	C	3.203e^-5	0.552	DOWNSTREAM CR44628 INTERGENIC
3L	15483280	3L_15483280_SNP [dm3] 3L_15490180_SNP [dm6]	T	C	3.212e^-5	0.552	INTERGENIC
X	19932654	X_19932654_SNP [dm3] X_20038621_SNP [dm6]	A	T	3.250e^-5	0.552	INTRON Dop2R
X	2932428	X_2932428_SNP [dm3] X_3038395_SNP [dm6]	T	C	3.308e^-5	0.552	INTRON kirre
X	13136787	X_13136787_SNP [dm3] X_13242754_SNP [dm6]	C	T	3.368e^-5	0.552	INTRON mew	TF binding site BDTNP1_TFBS_da
2R	10090609	2R_10090609_SNP [dm3] 2R_14203104_SNP [dm6]	T	C	3.450e^-5	0.552	SYNONYMOUS_CODING Sox15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4737896	3L_4737896_SNP [dm3] 3L_4737896_SNP [dm6]	G	A	3.482e^-5	0.552	INTRON RhoGEF64C
3L	11020856	3L_11020856_DEL [dm3] 3L_11027756_DEL [dm6]	TA	T	3.539e^-5	0.552	DOWNSTREAM CG32079 INTRON CG32081
3R	23777427	3R_23777427_SNP [dm3] 3R_27951705_SNP [dm6]	A	G	3.548e^-5	0.552	SYNONYMOUS_CODING Gp93 DOWNSTREAM CG4951	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9685627	3L_9685627_SNP [dm3] 3L_9692527_SNP [dm6]	A	G	3.566e^-5	0.552	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	9685634	3L_9685634_SNP [dm3] 3L_9692534_SNP [dm6]	C	T	3.566e^-5	0.552	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	9686029	3L_9686029_SNP [dm3] 3L_9692929_SNP [dm6]	A	T	3.566e^-5	0.552	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
3L	9686121	3L_9686121_SNP [dm3] 3L_9693021_SNP [dm6]	T	A	3.566e^-5	0.552	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
3R	25672069	3R_25672069_SNP [dm3] 3R_29846347_SNP [dm6]	T	A	3.578e^-5	0.552	INTRON Cad99C
3L	14925605	3L_14925605_SNP [dm3] 3L_14932505_SNP [dm6]	T	G	3.598e^-5	0.552	INTRON DCX-EMAP
2R	17920112	2R_17920112_SNP [dm3] 2R_22032607_SNP [dm6]	G	T	3.748e^-5	0.552	INTRON CG34370
3R	12971257	3R_12971257_SNP [dm3] 3R_17145535_SNP [dm6]	A	C	3.759e^-5	0.552	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3R	12971260	3R_12971260_DEL [dm3] 3R_17145538_DEL [dm6]	AGGTAAGCATCCTA...	G	3.759e^-5	0.552	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
2L	19896738	2L_19896738_SNP [dm3] 2L_19896738_SNP [dm6]	T	A	3.765e^-5	0.552	INTRON sick
2L	8957160	2L_8957160_SNP [dm3] 2L_8957160_SNP [dm6]	C	A	3.765e^-5	0.552	INTRON CG31886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	19830668	2L_19830668_SNP [dm3] 2L_19830668_SNP [dm6]	C	G	3.784e^-5	0.552	INTRON sick
3L	7209302	3L_7209302_INS [dm3] 3L_7216202_INS [dm6]	T	TGCTTTT	3.831e^-5	0.552	INTERGENIC
2L	19816622	2L_19816622_SNP [dm3] 2L_19816622_SNP [dm6]	T	A	3.843e^-5	0.552	UPSTREAM snRNA:U2:38ABa DOWNSTREAM snRNA:U5:38ABb INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	13682812	3R_13682812_SNP [dm3] 3R_17857090_SNP [dm6]	G	C	3.857e^-5	0.552	INTRON tinc
X	16344746	X_16344746_SNP [dm3] X_16450713_SNP [dm6]	A	T	3.934e^-5	0.559	INTRON Rbp2
3L	708572	3L_708572_SNP [dm3] 3L_708572_SNP [dm6]	T	A	3.997e^-5	0.559	UPSTREAM CG13895 DOWNSTREAM CkIIalpha-i3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
2R	16289158	2R_16289158_DEL [dm3] 2R_20401653_DEL [dm6]	CCG	C	4.007e^-5	0.559	INTERGENIC
3L	9686313	3L_9686313_SNP [dm3] 3L_9693213_SNP [dm6]	C	A	4.024e^-5	0.559	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
2L	19840286	2L_19840286_SNP [dm3] 2L_19840286_SNP [dm6]	C	A	4.088e^-5	0.564	INTRON sick
3R	13139524	3R_13139524_SNP [dm3] 3R_17313802_SNP [dm6]	G	T	4.191e^-5	0.567	INTERGENIC
3L	4737895	3L_4737895_SNP [dm3] 3L_4737895_SNP [dm6]	A	G	4.235e^-5	0.567	INTRON RhoGEF64C
2L	6508912	2L_6508912_SNP [dm3] 2L_6508912_SNP [dm6]	T	A	4.289e^-5	0.567	UPSTREAM CR44775 INTRON CG31637	TF binding site BDTNP1_TFBS_hb
2R	13506075	2R_13506075_SNP [dm3] 2R_17618570_SNP [dm6]	T	G	4.301e^-5	0.567	UPSTREAM CG44403 INTRON CG10936
2L	9515311	2L_9515311_SNP [dm3] 2L_9515311_SNP [dm6]	T	C	4.351e^-5	0.567	SPLICE_SITE_REGION CG33298 INTRON CG33298
X	4094020	X_4094020_SNP [dm3] X_4199987_SNP [dm6]	T	C	4.377e^-5	0.567	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	19903507	2L_19903507_SNP [dm3] 2L_19903507_SNP [dm6]	C	T	4.476e^-5	0.567	INTRON sick
3L	3910709	3L_3910709_SNP [dm3] 3L_3910709_SNP [dm6]	G	T	4.505e^-5	0.567	UTR_3_PRIME Eip63F-1 UPSTREAM mge DOWNSTREAM Eip63F-1
2R	12179893	2R_12179893_SNP [dm3] 2R_16292388_SNP [dm6]	T	C	4.574e^-5	0.567	SYNONYMOUS_CODING CG7747 UPSTREAM CR43730 DOWNSTREAM CG30100 & 1 other
3L	15483252	3L_15483252_SNP [dm3] 3L_15490152_SNP [dm6]	G	T	4.668e^-5	0.567	INTERGENIC
2L	19912411	2L_19912411_SNP [dm3] 2L_19912411_SNP [dm6]	C	A	4.707e^-5	0.567	UPSTREAM CR43097 & 1 other DOWNSTREAM Victoria INTRON sick
X	4461691	X_4461691_SNP [dm3] X_4567658_SNP [dm6]	G	A	4.790e^-5	0.567	INTRON CR32773
2L	387696	2L_387696_SNP [dm3] 2L_387696_SNP [dm6]	T	A	4.877e^-5	0.567	DOWNSTREAM al INTERGENIC
3R	6726397	3R_6726397_SNP [dm3] 3R_10900675_SNP [dm6]	A	G	4.915e^-5	0.567	INTERGENIC
3L	441963	3L_441963_SNP [dm3] 3L_441963_SNP [dm6]	C	T	4.935e^-5	0.567	UPSTREAM klar DOWNSTREAM klar INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
3L	9688724	3L_9688724_SNP [dm3] 3L_9695624_SNP [dm6]	T	A	4.956e^-5	0.567	UPSTREAM CG6767 INTRON CG6767 EXON CR45121	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8447265	2L_8447265_SNP [dm3] 2L_8447265_SNP [dm6]	A	G	4.992e^-5	0.567	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	10722068	3L_10722068_SNP [dm3] 3L_10728968_SNP [dm6]	T	C	5.056e^-5	0.567	INTERGENIC
2R	11573868	2R_11573868_SNP [dm3] 2R_15686363_SNP [dm6]	C	T	5.081e^-5	0.567	SYNONYMOUS_CODING Ranbp11 UPSTREAM CG30082	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3R	24413164	3R_24413164_SNP [dm3] 3R_28587442_SNP [dm6]	C	T	5.147e^-5	0.567	EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	14694914	2L_14694914_SNP [dm3] 2L_14694914_SNP [dm6]	C	T	5.150e^-5	0.567	INTERGENIC
X	5228937	X_5228937_INS [dm3] X_5334904_INS [dm6]	C	CTACACTCGCAAAAAAAAAA...	5.167e^-5	0.567	DOWNSTREAM CanB INTERGENIC
3L	15488893	3L_15488893_DEL [dm3] 3L_15495793_DEL [dm6]	TCT	T	5.184e^-5	0.567	UPSTREAM CG12355 & 1 other INTERGENIC
2L	21024570	2L_21024570_SNP [dm3] 2L_21024570_SNP [dm6]	T	C	5.196e^-5	0.567	INTRON CG42238	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	21386998	3L_21386998_SNP [dm3] 3L_21393898_SNP [dm6]	G	A	5.241e^-5	0.567	INTRON rgn
2R	11575325	2R_11575325_SNP [dm3] 2R_15687820_SNP [dm6]	T	G	5.283e^-5	0.567	NON_SYNONYMOUS_CODING Cep89 DOWNSTREAM Ranbp11	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19898607	2L_19898607_SNP [dm3] 2L_19898607_SNP [dm6]	T	A	5.297e^-5	0.567	INTRON sick
X	5228684	X_5228684_SNP [dm3] X_5334651_SNP [dm6]	C	T	5.310e^-5	0.567	DOWNSTREAM CanB INTERGENIC
2R	12179193	2R_12179193_SNP [dm3] 2R_16291688_SNP [dm6]	G	A	5.358e^-5	0.567	SYNONYMOUS_CODING CG42372 UTR_5_PRIME CG30100 UPSTREAM CR43730 DOWNSTREAM CG7747 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12179251	2R_12179251_SNP [dm3] 2R_16291746_SNP [dm6]	T	A	5.358e^-5	0.567	UPSTREAM CR43730 DOWNSTREAM CG7747 & 1 other INTRON CG30100 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12179299	2R_12179299_SNP [dm3] 2R_16291794_SNP [dm6]	G	A	5.358e^-5	0.567	SYNONYMOUS_CODING CG42372 UTR_5_PRIME CG30100 UPSTREAM CR43730 DOWNSTREAM CG7747 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	5661124	X_5661124_SNP [dm3] X_5767091_SNP [dm6]	G	A	5.362e^-5	0.567	SYNONYMOUS_CODING CG3097 INTRON CG42699	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	1686134	3R_1686134_SNP [dm3] 3R_5860412_SNP [dm6]	A	C	5.365e^-5	0.567	SPLICE_SITE_REGION CG2017 INTRON CG2017
3L	7296139	3L_7296139_DEL [dm3] 3L_7303039_DEL [dm6]	AA	A	5.372e^-5	0.567	INTRON unc-13-4A
3L	712810	3L_712810_SNP [dm3] 3L_712810_SNP [dm6]	T	C	5.391e^-5	0.567	UPSTREAM CG13896 INTERGENIC	TF binding site mE1_TFBS_sens
3R	25540289	3R_25540289_SNP [dm3] 3R_29714567_SNP [dm6]	G	A	5.434e^-5	0.567	NON_SYNONYMOUS_CODING Obp99d UPSTREAM CR45569 DOWNSTREAM Dup99B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	11020859	3L_11020859_SNP [dm3] 3L_11027759_SNP [dm6]	T	A	5.441e^-5	0.567	DOWNSTREAM CG32079 INTRON CG32081
3R	13682475	3R_13682475_SNP [dm3] 3R_17856753_SNP [dm6]	G	A	5.449e^-5	0.567	INTRON tinc
2L	21775574	2L_21775574_INS [dm3] 2L_21775574_INS [dm6]	A	ATC	5.502e^-5	0.567	INTRON CG31612	TF binding site mE1_TFBS_HSA transposable element FlyBase
3R	21989378	3R_21989378_SNP [dm3] 3R_26163656_SNP [dm6]	G	A	5.508e^-5	0.567	INTERGENIC
3R	21989380	3R_21989380_SNP [dm3] 3R_26163658_SNP [dm6]	T	C	5.508e^-5	0.567	INTERGENIC
3L	9687137	3L_9687137_SNP [dm3] 3L_9694037_SNP [dm6]	T	C	5.513e^-5	0.567	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	9687160	3L_9687160_SNP [dm3] 3L_9694060_SNP [dm6]	G	T	5.513e^-5	0.567	UPSTREAM CR45121 INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	19822550	2L_19822550_SNP [dm3] 2L_19822550_SNP [dm6]	A	C	5.549e^-5	0.567	INTRON sick
3L	2994853	3L_2994853_SNP [dm3] 3L_2994853_SNP [dm6]	T	C	5.557e^-5	0.567	UPSTREAM CG2113 INTERGENIC
3R	25570656	3R_25570656_SNP [dm3] 3R_29744934_SNP [dm6]	G	A	5.560e^-5	0.567	SYNONYMOUS_CODING CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19994018	2R_19994018_SNP [dm3] 2R_24106495_SNP [dm6]	A	G	5.567e^-5	0.567	SYNONYMOUS_CODING enok DOWNSTREAM CG4049	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10261718	3L_10261718_SNP [dm3] 3L_10268618_SNP [dm6]	G	A	5.595e^-5	0.567	UPSTREAM CR45242 INTERGENIC	regulatory region REDfly_CRMs
3R	2952106	3R_2952106_SNP [dm3] 3R_7126384_SNP [dm6]	G	A	5.606e^-5	0.567	UTR_3_PRIME CG10098 & 1 other
3R	22780339	3R_22780339_SNP [dm3] 3R_26954617_SNP [dm6]	T	C	5.766e^-5	0.567	INTRON CG6330	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	19825513	2L_19825513_DEL [dm3] 2L_19825513_DEL [dm6]	TT	T	5.781e^-5	0.567	UPSTREAM sick INTRON sick
2L	4016813	2L_4016813_SNP [dm3] 2L_4016813_SNP [dm6]	T	C	5.804e^-5	0.567	INTERGENIC
2L	21065012	2L_21065012_SNP [dm3] 2L_21065012_SNP [dm6]	T	A	5.920e^-5	0.567	INTRON CG9265
2L	7935558	2L_7935558_SNP [dm3] 2L_7935558_SNP [dm6]	G	T	5.937e^-5	0.567	INTRON Snoo
3R	25540452	3R_25540452_SNP [dm3] 3R_29714730_SNP [dm6]	T	G	6.001e^-5	0.567	SYNONYMOUS_CODING Obp99d DOWNSTREAM Dup99B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	23685767	3R_23685767_SNP [dm3] 3R_27860045_SNP [dm6]	A	G	6.023e^-5	0.567	INTRON CG34353
3R	12972916	3R_12972916_SNP [dm3] 3R_17147194_SNP [dm6]	G	A	6.035e^-5	0.567	SYNONYMOUS_CODING m-cup
3R	12972943	3R_12972943_SNP [dm3] 3R_17147221_SNP [dm6]	A	T	6.035e^-5	0.567	SYNONYMOUS_CODING m-cup
X	17948777	X_17948777_SNP [dm3] X_18054744_SNP [dm6]	G	A	6.049e^-5	0.567	INTRON Sh
3L	711093	3L_711093_SNP [dm3] 3L_711093_SNP [dm6]	C	G	6.111e^-5	0.567	NON_SYNONYMOUS_CODING CG13896 UPSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
2L	5883852	2L_5883852_SNP [dm3] 2L_5883852_SNP [dm6]	A	G	6.200e^-5	0.567	DOWNSTREAM Sfp26Ac INTRON CG44574
3R	19357158	3R_19357158_SNP [dm3] 3R_23531436_SNP [dm6]	T	C	6.202e^-5	0.567	UPSTREAM CG10175 INTERGENIC
X	21160839	X_21160839_SNP [dm3] X_21289812_SNP [dm6]	T	C	6.209e^-5	0.567	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19933467	2L_19933467_SNP [dm3] 2L_19933467_SNP [dm6]	T	A	6.219e^-5	0.567	DOWNSTREAM CR45183 INTRON sick
3L	7461504	3L_7461504_SNP [dm3] 3L_7468404_SNP [dm6]	A	C	6.235e^-5	0.567	UTR_3_PRIME CG42660 & 2 others
2L	3825075	2L_3825075_SNP [dm3] 2L_3825075_SNP [dm6]	T	A	6.258e^-5	0.567	UPSTREAM slp1 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	8151400	3L_8151400_SNP [dm3] 3L_8158300_SNP [dm6]	A	T	6.274e^-5	0.567	INTRON CG42445
3R	5709131	3R_5709131_SNP [dm3] 3R_9883409_SNP [dm6]	C	G	6.291e^-5	0.567	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8908601	2R_8908601_SNP [dm3] 2R_13021096_SNP [dm6]	T	A	6.319e^-5	0.567	INTERGENIC	TF binding site mE1_TFBS_cad
2L	19890124	2L_19890124_SNP [dm3] 2L_19890124_SNP [dm6]	T	G	6.345e^-5	0.567	DOWNSTREAM CG10481 INTRON sick
3L	951220	3L_951220_SNP [dm3] 3L_951220_SNP [dm6]	G	C	6.351e^-5	0.567	INTRON Glut1
3L	6714238	3L_6714238_SNP [dm3] 3L_6721138_SNP [dm6]	T	C	6.363e^-5	0.567	INTERGENIC
X	13018717	X_13018717_SNP [dm3] X_13124684_SNP [dm6]	C	T	6.393e^-5	0.567	INTRON CG32638
3L	9688709	3L_9688709_SNP [dm3] 3L_9695609_SNP [dm6]	C	G	6.397e^-5	0.567	UPSTREAM CG6767 INTRON CG6767 EXON CR45121	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	19011939	X_19011939_SNP [dm3] X_19117906_SNP [dm6]	C	A	6.430e^-5	0.567	INTERGENIC
3R	2449286	3R_2449286_SNP [dm3] 3R_6623564_SNP [dm6]	G	A	6.437e^-5	0.567	INTERGENIC
3R	21989388	3R_21989388_SNP [dm3] 3R_26163666_SNP [dm6]	A	T	6.446e^-5	0.567	INTERGENIC
2L	19830693	2L_19830693_SNP [dm3] 2L_19830693_SNP [dm6]	A	G	6.614e^-5	0.579	INTRON sick
2L	19830653	2L_19830653_SNP [dm3] 2L_19830653_SNP [dm6]	C	G	6.736e^-5	0.584	INTRON sick
2R	17727974	2R_17727974_SNP [dm3] 2R_21840469_SNP [dm6]	A	G	6.879e^-5	0.584	INTERGENIC
2L	19890129	2L_19890129_SNP [dm3] 2L_19890129_SNP [dm6]	G	A	6.915e^-5	0.584	DOWNSTREAM CG10481 INTRON sick
3L	9515093	3L_9515093_SNP [dm3] 3L_9521993_SNP [dm6]	C	G	6.942e^-5	0.584	INTRON CG33700
2L	19830651	2L_19830651_SNP [dm3] 2L_19830651_SNP [dm6]	T	C	6.954e^-5	0.584	INTRON sick
3R	27146681	3R_27146681_SNP [dm3] 3R_31320959_SNP [dm6]	C	A	6.963e^-5	0.584	INTRON CG34347
3L	711035	3L_711035_SNP [dm3] 3L_711035_SNP [dm6]	A	G	6.963e^-5	0.584	SYNONYMOUS_CODING CG13896 UPSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	6511556	2L_6511556_SNP [dm3] 2L_6511556_SNP [dm6]	T	C	6.968e^-5	0.584	INTRON CG31637
2R	19565658	2R_19565658_SNP [dm3] 2R_23678135_SNP [dm6]	T	G	6.999e^-5	0.584	SYNONYMOUS_CODING Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7601899	2R_7601899_INS [dm3] 2R_11714394_INS [dm6]	C	ATGGTA	7.010e^-5	0.584	INTRON pyr
2L	8448106	2L_8448106_SNP [dm3] 2L_8448106_SNP [dm6]	G	A	7.020e^-5	0.584	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5559719	2L_5559719_SNP [dm3] 2L_5559719_SNP [dm6]	T	C	7.037e^-5	0.584	SYNONYMOUS_CODING GluRIIB DOWNSTREAM GluRIIA	TF binding site mE1_TFBS_inv
3L	16432980	3L_16432980_SNP [dm3] 3L_16439880_SNP [dm6]	A	T	7.223e^-5	0.589	INTRON CG33158 & 1 other
2L	1034963	2L_1034963_SNP [dm3] 2L_1034963_SNP [dm6]	A	G	7.272e^-5	0.589	UPSTREAM IA-2 INTRON IA-2
3R	10436858	3R_10436858_SNP [dm3] 3R_14611136_SNP [dm6]	T	C	7.277e^-5	0.589	INTRON CG14853
2L	19890116	2L_19890116_SNP [dm3] 2L_19890116_SNP [dm6]	T	A	7.292e^-5	0.589	DOWNSTREAM CG10481 INTRON sick
2L	19808957	2L_19808957_SNP [dm3] 2L_19808957_SNP [dm6]	T	A	7.321e^-5	0.589	INTRON sick	TF binding site mE1_TFBS_cad
3L	1733503	3L_1733503_SNP [dm3] 3L_1733503_SNP [dm6]	G	A	7.333e^-5	0.589	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	13619077	X_13619077_SNP [dm3] X_13725044_SNP [dm6]	G	A	7.348e^-5	0.589	SYNONYMOUS_CODING mus101	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	6839481	3L_6839481_SNP [dm3] 3L_6846381_SNP [dm6]	A	C	7.349e^-5	0.589	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	27006630	3R_27006630_SNP [dm3] 3R_31180908_SNP [dm6]	A	T	7.437e^-5	0.592	INTRON mesh	TF binding site mE1_TFBS_cad
3R	2868309	3R_2868309_SNP [dm3] 3R_7042587_SNP [dm6]	G	A	7.454e^-5	0.592	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	23893336	3R_23893336_SNP [dm3] 3R_28067614_SNP [dm6]	G	A	7.529e^-5	0.592	INTRON CG34362
3L	9515094	3L_9515094_SNP [dm3] 3L_9521994_SNP [dm6]	T	A	7.556e^-5	0.592	INTRON CG33700
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	7.583e^-5	0.592	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	713137	3L_713137_SNP [dm3] 3L_713137_SNP [dm6]	A	G	7.596e^-5	0.592	INTERGENIC	TF binding site mE1_TFBS_sens
2L	6090262	2L_6090262_SNP [dm3] 2L_6090262_SNP [dm6]	T	C	7.656e^-5	0.592	INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3L	391927	3L_391927_INS [dm3] 3L_391927_INS [dm6]	A	AATTGGAT	7.703e^-5	0.592	DOWNSTREAM CR45378 INTRON trh
3L	8929326	3L_8929326_SNP [dm3] 3L_8936226_SNP [dm6]	C	T	7.721e^-5	0.592	NON_SYNONYMOUS_CODING CG43783 DOWNSTREAM orb2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	3469607	3R_3469607_SNP [dm3] 3R_7643885_SNP [dm6]	C	T	7.748e^-5	0.592	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18282632	2R_18282632_SNP [dm3] 2R_22395127_SNP [dm6]	T	A	7.754e^-5	0.592	INTRON babos
2L	3825069	2L_3825069_SNP [dm3] 2L_3825069_SNP [dm6]	T	C	7.813e^-5	0.592	UPSTREAM slp1 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	7561325	3L_7561325_SNP [dm3] 3L_7568225_SNP [dm6]	T	C	7.828e^-5	0.592	SYNONYMOUS_CODING frac
X	2930850	X_2930850_SNP [dm3] X_3036817_SNP [dm6]	G	A	7.837e^-5	0.592	INTRON kirre
3L	4924712	3L_4924712_SNP [dm3] 3L_4924712_SNP [dm6]	C	A	7.897e^-5	0.595	INTERGENIC
3L	8695957	3L_8695957_DEL [dm3] 3L_8702857_DEL [dm6]	TAT	T	7.989e^-5	0.599	INTERGENIC
3L	8590702	3L_8590702_SNP [dm3] 3L_8597602_SNP [dm6]	G	A	8.019e^-5	0.599	NON_SYNONYMOUS_CODING CG43078	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10282597	3L_10282597_SNP [dm3] 3L_10289497_SNP [dm6]	A	G	8.052e^-5	0.599	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	388595	2L_388595_SNP [dm3] 2L_388595_SNP [dm6]	G	T	8.153e^-5	0.599	INTERGENIC
2R	12179902	2R_12179902_SNP [dm3] 2R_16292397_SNP [dm6]	G	A	8.223e^-5	0.599	SYNONYMOUS_CODING CG7747 UPSTREAM CR43730 DOWNSTREAM CG30100 & 1 other
2L	8447278	2L_8447278_SNP [dm3] 2L_8447278_SNP [dm6]	T	G	8.239e^-5	0.599	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	6839496	3L_6839496_SNP [dm3] 3L_6846396_SNP [dm6]	T	G	8.248e^-5	0.599	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	14271149	2R_14271149_SNP [dm3] 2R_18383644_SNP [dm6]	A	T	8.312e^-5	0.599	UPSTREAM IM1 & 2 others INTERGENIC
X	13026679	X_13026679_SNP [dm3] X_13132646_SNP [dm6]	T	G	8.313e^-5	0.599	INTRON MFS10 & 1 other
3R	5129982	3R_5129982_SNP [dm3] 3R_9304260_SNP [dm6]	C	G	8.322e^-5	0.599	INTRON CG8861
X	21947178	X_21947178_SNP [dm3] X_22545342_SNP [dm6]	A	T	8.389e^-5	0.599	INTERGENIC	transposable element FlyBase
2L	19841561	2L_19841561_SNP [dm3] 2L_19841561_SNP [dm6]	C	A	8.570e^-5	0.599	INTRON sick
3R	10410917	3R_10410917_SNP [dm3] 3R_14585195_SNP [dm6]	A	T	8.598e^-5	0.599	INTRON stumps	TF binding site BDTNP1_TFBS_prd
2L	19825522	2L_19825522_SNP [dm3] 2L_19825522_SNP [dm6]	C	T	8.617e^-5	0.599	UPSTREAM sick INTRON sick
2L	19898621	2L_19898621_SNP [dm3] 2L_19898621_SNP [dm6]	G	T	8.622e^-5	0.599	INTRON sick
X	5228746	X_5228746_SNP [dm3] X_5334713_SNP [dm6]	G	C	8.626e^-5	0.599	DOWNSTREAM CanB INTERGENIC
2L	5901184	2L_5901184_SNP [dm3] 2L_5901184_SNP [dm6]	G	T	8.645e^-5	0.599	UPSTREAM CR44579 INTERGENIC
3R	10436192	3R_10436192_SNP [dm3] 3R_14610470_SNP [dm6]	G	T	8.656e^-5	0.599	INTRON CG14853
2R	15874958	2R_15874958_SNP [dm3] 2R_19987453_SNP [dm6]	G	A	8.678e^-5	0.599	INTERGENIC
2L	2347231	2L_2347231_SNP [dm3] 2L_2347231_SNP [dm6]	A	G	8.731e^-5	0.599	INTRON CG9967 & 1 other
2L	19941325	2L_19941325_SNP [dm3] 2L_19941325_SNP [dm6]	C	T	8.746e^-5	0.599	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3L	487650	3L_487650_SNP [dm3] 3L_487650_SNP [dm6]	A	C	8.752e^-5	0.599	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16864005	2R_16864005_SNP [dm3] 2R_20976500_SNP [dm6]	A	T	8.766e^-5	0.599	UPSTREAM CG9344 INTRON CG34115	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	18985584	2R_18985584_SNP [dm3] 2R_23098061_SNP [dm6]	T	C	8.778e^-5	0.599	INTERGENIC
3L	17089087	3L_17089087_INS [dm3] 3L_17095987_INS [dm6]	A	AGATCT	8.782e^-5	0.599	INTRON Rbp6
3L	9686649	3L_9686649_SNP [dm3] 3L_9693549_SNP [dm6]	G	A	8.785e^-5	0.599	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	13026314	X_13026314_SNP [dm3] X_13132281_SNP [dm6]	T	G	8.884e^-5	0.599	INTRON MFS10 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	19821796	2L_19821796_SNP [dm3] 2L_19821796_SNP [dm6]	C	A	8.908e^-5	0.599	INTRON sick
3R	23777355	3R_23777355_SNP [dm3] 3R_27951633_SNP [dm6]	C	T	8.954e^-5	0.599	SYNONYMOUS_CODING Gp93 DOWNSTREAM CG4951	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2931185	X_2931185_SNP [dm3] X_3037152_SNP [dm6]	C	T	8.969e^-5	0.599	INTRON kirre
2L	19890060	2L_19890060_SNP [dm3] 2L_19890060_SNP [dm6]	T	C	8.980e^-5	0.599	DOWNSTREAM CG10481 INTRON sick
2L	19813910	2L_19813910_SNP [dm3] 2L_19813910_SNP [dm6]	C	T	8.995e^-5	0.599	SYNONYMOUS_CODING CG13962 INTRON sick	TF binding site mE1_TFBS_HSA
3R	10914332	3R_10914332_SNP [dm3] 3R_15088610_SNP [dm6]	A	G	9.011e^-5	0.599	INTRON CG6966
2L	19835414	2L_19835414_SNP [dm3] 2L_19835414_SNP [dm6]	C	T	9.092e^-5	0.601	INTRON sick
3L	15606962	3L_15606962_SNP [dm3] 3L_15613862_SNP [dm6]	G	T	9.107e^-5	0.601	SYNONYMOUS_CODING comm3
2R	6016861	2R_6016861_SNP [dm3] 2R_10129356_SNP [dm6]	T	G	9.184e^-5	0.604	INTRON gem
3L	19633508	3L_19633508_DEL [dm3] 3L_19640408_DEL [dm6]	GTTTG	G	9.320e^-5	0.606	UTR_3_PRIME CG8786 INTRON CG8786
2R	19502631	2R_19502631_SNP [dm3] 2R_23615108_SNP [dm6]	T	C	9.356e^-5	0.606	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
X	21160844	X_21160844_SNP [dm3] X_21289817_SNP [dm6]	G	C	9.380e^-5	0.606	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10627144	3L_10627144_SNP [dm3] 3L_10634044_SNP [dm6]	G	T	9.381e^-5	0.606	DOWNSTREAM E_z_ & 1 other INTRON CG34001
X	19921445	X_19921445_SNP [dm3] X_20027412_SNP [dm6]	T	C	9.397e^-5	0.606	INTRON Dop2R
2R	10693975	2R_10693975_SNP [dm3] 2R_14806470_SNP [dm6]	T	A	9.436e^-5	0.606	INTRON kn	regulatory region REDfly_CRMs
3L	9515096	3L_9515096_SNP [dm3] 3L_9521996_SNP [dm6]	A	G	9.475e^-5	0.606	INTRON CG33700
3L	10969435	3L_10969435_SNP [dm3] 3L_10976335_SNP [dm6]	A	C	9.524e^-5	0.606	INTERGENIC	TF binding site mE1_TFBS_cad
3R	26098622	3R_26098622_SNP [dm3] 3R_30272900_SNP [dm6]	T	G	9.534e^-5	0.606	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	19901797	2L_19901797_DEL [dm3] 2L_19901797_DEL [dm6]	TAAAAACAAAA...	T	9.543e^-5	0.606	INTRON sick
X	19421607	X_19421607_DEL [dm3] X_19527574_DEL [dm6]	CAC	C	9.597e^-5	0.608	UPSTREAM CoRest INTRON CoRest	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	19824843	2L_19824843_SNP [dm3] 2L_19824843_SNP [dm6]	G	T	9.652e^-5	0.609	INTRON sick
3R	2868311	3R_2868311_INS [dm3] 3R_7042589_INS [dm6]	C	CGGA	9.790e^-5	0.613	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	16864219	2R_16864219_SNP [dm3] 2R_20976714_SNP [dm6]	G	A	9.795e^-5	0.613	UPSTREAM CG9344 DOWNSTREAM CG15650 INTRON CG34115	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	7349516	3R_7349516_SNP [dm3] 3R_11523794_SNP [dm6]	C	G	9.899e^-5	0.613	INTERGENIC
3L	7257545	3L_7257545_SNP [dm3] 3L_7264445_SNP [dm6]	T	A	9.919e^-5	0.613	UPSTREAM CG14830 INTERGENIC
3R	14698893	3R_14698893_SNP [dm3] 3R_18873171_SNP [dm6]	G	A	9.919e^-5	0.613	INTERGENIC
2L	1198368	2L_1198368_SNP [dm3] 2L_1198368_SNP [dm6]	T	C	9.958e^-5	0.613	DOWNSTREAM CG5139 INTERGENIC
3R	13019603	3R_13019603_SNP [dm3] 3R_17193881_SNP [dm6]	A	G	1.002e^-4	0.613	INTRON Mur89F
3R	10437640	3R_10437640_SNP [dm3] 3R_14611918_SNP [dm6]	A	T	1.003e^-4	0.613	INTRON CG14853
3R	18562706	3R_18562706_SNP [dm3] 3R_22736984_SNP [dm6]	G	A	1.010e^-4	0.613	NON_SYNONYMOUS_CODING Dcr-1	TF binding site mE1_TFBS_cad
2L	6090275	2L_6090275_SNP [dm3] 2L_6090275_SNP [dm6]	C	A	1.011e^-4	0.613	INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3L	7560753	3L_7560753_SNP [dm3] 3L_7567653_SNP [dm6]	C	T	1.012e^-4	0.613	SYNONYMOUS_CODING frac
2L	19822544	2L_19822544_SNP [dm3] 2L_19822544_SNP [dm6]	A	C	1.013e^-4	0.613	INTRON sick
2L	8956572	2L_8956572_SNP [dm3] 2L_8956572_SNP [dm6]	A	T	1.024e^-4	0.613	UPSTREAM CG31886 INTRON CG31886	TF binding site BDTNP1_TFBS_twi mE1_TFBS_zfh1
3L	16896011	3L_16896011_SNP [dm3] 3L_16902911_SNP [dm6]	A	T	1.030e^-4	0.613	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo
2R	8344426	2R_8344426_SNP [dm3] 2R_12456921_SNP [dm6]	C	T	1.032e^-4	0.613	INTRON Lac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6511526	2L_6511526_SNP [dm3] 2L_6511526_SNP [dm6]	A	G	1.033e^-4	0.613	INTRON CG31637
3R	2867868	3R_2867868_SNP [dm3] 3R_7042146_SNP [dm6]	G	A	1.033e^-4	0.613	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8447795	2L_8447795_SNP [dm3] 2L_8447795_SNP [dm6]	C	T	1.035e^-4	0.613	SYNONYMOUS_CODING U26 UTR_3_PRIME U26
3L	10363772	3L_10363772_SNP [dm3] 3L_10370672_SNP [dm6]	A	T	1.037e^-4	0.613	INTERGENIC
2L	9991545	2L_9991545_SNP [dm3] 2L_9991545_SNP [dm6]	T	A	1.037e^-4	0.613	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19816601	2L_19816601_SNP [dm3] 2L_19816601_SNP [dm6]	G	T	1.040e^-4	0.613	UPSTREAM snRNA:U2:38ABa DOWNSTREAM snRNA:U5:38ABb INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	19830673	2L_19830673_SNP [dm3] 2L_19830673_SNP [dm6]	A	T	1.046e^-4	0.615	INTRON sick
3L	332513	3L_332513_SNP [dm3] 3L_332513_SNP [dm6]	G	A	1.054e^-4	0.615	UPSTREAM mthl9 DOWNSTREAM mthl10 INTRON Ptpmeg	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	11841580	3L_11841580_SNP [dm3] 3L_11848480_SNP [dm6]	T	C	1.054e^-4	0.615	UPSTREAM CG12521 INTERGENIC
3R	25672030	3R_25672030_SNP [dm3] 3R_29846308_SNP [dm6]	T	C	1.056e^-4	0.615	INTRON Cad99C
3L	17624822	3L_17624822_SNP [dm3] 3L_17631722_SNP [dm6]	G	C	1.064e^-4	0.617	DOWNSTREAM CG7510 EXON CR44566
3L	7832751	3L_7832751_SNP [dm3] 3L_7839651_SNP [dm6]	A	T	1.068e^-4	0.618	INTRON Pdp1	regulatory region REDfly_CRMs
3L	4159131	3L_4159131_DEL [dm3] 3L_4159131_DEL [dm6]	GG	G	1.082e^-4	0.622	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	3893005	3L_3893005_SNP [dm3] 3L_3893005_SNP [dm6]	C	T	1.083e^-4	0.622	DOWNSTREAM snRNA:U11 INTRON Fie
2L	19880034	2L_19880034_SNP [dm3] 2L_19880034_SNP [dm6]	A	G	1.086e^-4	0.622	INTRON sick
X	2931183	X_2931183_SNP [dm3] X_3037150_SNP [dm6]	T	C	1.093e^-4	0.622	INTRON kirre
2L	21851919	2L_21851919_INS [dm3] 2L_21851919_INS [dm6]	T	TTCT	1.094e^-4	0.622	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	13600157	3R_13600157_SNP [dm3] 3R_17774435_SNP [dm6]	T	G	1.104e^-4	0.622	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
2L	19826798	2L_19826798_SNP [dm3] 2L_19826798_SNP [dm6]	G	C	1.105e^-4	0.622	UTR_5_PRIME sick UPSTREAM sick INTRON sick
X	18636906	X_18636906_SNP [dm3] X_18742873_SNP [dm6]	C	T	1.112e^-4	0.622	INTERGENIC
2L	3437649	2L_3437649_SNP [dm3] 2L_3437649_SNP [dm6]	A	T	1.114e^-4	0.622	INTERGENIC
X	3934025	X_3934025_SNP [dm3] X_4039992_SNP [dm6]	C	A	1.116e^-4	0.622	INTERGENIC
3L	9512504	3L_9512504_SNP [dm3] 3L_9519404_SNP [dm6]	A	T	1.116e^-4	0.622	INTRON CG33700
3R	2867864	3R_2867864_SNP [dm3] 3R_7042142_SNP [dm6]	A	C	1.117e^-4	0.622	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24727035	3R_24727035_SNP [dm3] 3R_28901313_SNP [dm6]	C	T	1.122e^-4	0.622	INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13487564	3L_13487564_SNP [dm3] 3L_13494464_SNP [dm6]	G	T	1.129e^-4	0.622	INTRON Tgi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	13026411	X_13026411_INS [dm3] X_13132378_INS [dm6]	T	TTTTT	1.134e^-4	0.622	INTRON MFS10 & 1 other
3R	13015076	3R_13015076_SNP [dm3] 3R_17189354_SNP [dm6]	G	T	1.135e^-4	0.622	INTRON Mur89F	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15483209	3L_15483209_SNP [dm3] 3L_15490109_SNP [dm6]	A	G	1.137e^-4	0.622	INTERGENIC
2L	8448676	2L_8448676_SNP [dm3] 2L_8448676_SNP [dm6]	G	T	1.144e^-4	0.622	SYNONYMOUS_CODING U26
3L	10627138	3L_10627138_SNP [dm3] 3L_10634038_SNP [dm6]	A	C	1.154e^-4	0.622	DOWNSTREAM E_z_ & 1 other INTRON CG34001
3L	10627139	3L_10627139_SNP [dm3] 3L_10634039_SNP [dm6]	C	A	1.154e^-4	0.622	DOWNSTREAM E_z_ & 1 other INTRON CG34001
2R	6723366	2R_6723366_DEL [dm3] 2R_10835861_DEL [dm6]	CAGCGATGGGG...	C	1.155e^-4	0.622	UPSTREAM CG12344 DOWNSTREAM CG7686 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11617856	3L_11617856_SNP [dm3] 3L_11624756_SNP [dm6]	T	G	1.156e^-4	0.622	SYNONYMOUS_CODING CG6083 UPSTREAM CG6084
2R	17621665	2R_17621665_SNP [dm3] 2R_21734160_SNP [dm6]	T	A	1.156e^-4	0.622	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	19804790	2L_19804790_SNP [dm3] 2L_19804790_SNP [dm6]	C	G	1.157e^-4	0.622	INTRON sick
X	13026415	X_13026415_SNP [dm3] X_13132382_SNP [dm6]	A	T	1.165e^-4	0.622	INTRON MFS10 & 1 other
3L	14926532	3L_14926532_DEL [dm3] 3L_14933432_DEL [dm6]	AACGAAA	A	1.169e^-4	0.622	INTRON DCX-EMAP
X	17952248	X_17952248_SNP [dm3] X_18058215_SNP [dm6]	C	A	1.176e^-4	0.622	INTRON Sh
X	13026420	X_13026420_SNP [dm3] X_13132387_SNP [dm6]	A	T	1.176e^-4	0.622	INTRON MFS10 & 1 other
2R	10345222	2R_10345222_INS [dm3] 2R_14457717_INS [dm6]	T	TCTCTGGAAAACTT...	1.184e^-4	0.622	UPSTREAM Oaz INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	7680449	X_7680449_SNP [dm3] X_7786416_SNP [dm6]	A	T	1.184e^-4	0.622	INTERGENIC
3R	4342921	3R_4342921_SNP [dm3] 3R_8517199_SNP [dm6]	C	T	1.186e^-4	0.622	UPSTREAM CG11737 INTERGENIC
X	10569471	X_10569471_SNP [dm3] X_10675438_SNP [dm6]	A	C	1.187e^-4	0.622	INTRON X11Lbeta
3R	7278942	3R_7278942_SNP [dm3] 3R_11453220_SNP [dm6]	A	G	1.189e^-4	0.622	SYNONYMOUS_CODING PGRP-LB INTRON CG17230	TF binding site mE1_TFBS_chinmo
2L	19802933	2L_19802933_SNP [dm3] 2L_19802933_SNP [dm6]	G	A	1.190e^-4	0.622	INTRON sick
3L	23347366	3L_23347366_SNP [dm3] 3L_23354266_SNP [dm6]	A	T	1.194e^-4	0.622	INTERGENIC
2L	16135142	2L_16135142_SNP [dm3] 2L_16135142_SNP [dm6]	C	T	1.195e^-4	0.622	DOWNSTREAM CR44871 & 1 other INTRON CG34168
2L	19817849	2L_19817849_SNP [dm3] 2L_19817849_SNP [dm6]	C	G	1.200e^-4	0.623	INTRON sick	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
3R	13019604	3R_13019604_INS [dm3] 3R_17193882_INS [dm6]	A	AACCTATTGAACCTATTGAA...	1.208e^-4	0.624	INTRON Mur89F
3L	6839692	3L_6839692_SNP [dm3] 3L_6846592_SNP [dm6]	C	G	1.209e^-4	0.624	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_Kr
X	21946743	X_21946743_SNP [dm3] X_22544907_SNP [dm6]	C	A	1.214e^-4	0.625	UPSTREAM CG17599 INTERGENIC
X	21948499	X_21948499_SNP [dm3] X_22546663_SNP [dm6]	C	G	1.221e^-4	0.626	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_kn
3R	19501621	3R_19501621_SNP [dm3] 3R_23675899_SNP [dm6]	A	T	1.229e^-4	0.626	INTERGENIC
2L	16135147	2L_16135147_SNP [dm3] 2L_16135147_SNP [dm6]	G	A	1.231e^-4	0.626	DOWNSTREAM CR44871 & 1 other INTRON CG34168
2R	20161899	2R_20161899_SNP [dm3] 2R_24274376_SNP [dm6]	G	A	1.232e^-4	0.626	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
X	11352197	X_11352197_SNP [dm3] X_11458164_SNP [dm6]	A	C	1.233e^-4	0.626	INTRON HP5
3R	22236025	3R_22236025_SNP [dm3] 3R_26410303_SNP [dm6]	T	C	1.242e^-4	0.627	INTERGENIC
X	21921468	X_21921468_SNP [dm3] X_22519632_SNP [dm6]	A	G	1.246e^-4	0.627	INTRON CG17600
3L	17090129	3L_17090129_SNP [dm3] 3L_17097029_SNP [dm6]	A	T	1.252e^-4	0.627	INTRON Rbp6
2L	6534172	2L_6534172_SNP [dm3] 2L_6534172_SNP [dm6]	C	T	1.252e^-4	0.627	INTRON eya	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	710429	3L_710429_SNP [dm3] 3L_710429_SNP [dm6]	T	G	1.260e^-4	0.627	UTR_5_PRIME CkIIalpha-i3 UPSTREAM CkIIalpha-i3 DOWNSTREAM CG13896	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2R	495298	2R_495298_SNP [dm3] 2R_4607793_SNP [dm6]	C	T	1.260e^-4	0.627	INTRON p120ctn	transposable element FlyBase
X	13026419	X_13026419_SNP [dm3] X_13132386_SNP [dm6]	A	T	1.261e^-4	0.627	INTRON MFS10 & 1 other
2L	9853732	2L_9853732_SNP [dm3] 2L_9853732_SNP [dm6]	A	T	1.261e^-4	0.627	INTRON nAChRalpha6
2R	17696411	2R_17696411_SNP [dm3] 2R_21808906_SNP [dm6]	A	C	1.276e^-4	0.631	INTERGENIC
2R	9204851	2R_9204851_SNP [dm3] 2R_13317346_SNP [dm6]	G	C	1.278e^-4	0.631	INTERGENIC
3L	391184	3L_391184_SNP [dm3] 3L_391184_SNP [dm6]	C	A	1.278e^-4	0.631	DOWNSTREAM CR45378 INTRON trh
2R	11575636	2R_11575636_SNP [dm3] 2R_15688131_SNP [dm6]	G	T	1.288e^-4	0.631	SYNONYMOUS_CODING Cep89 DOWNSTREAM Ranbp11	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6342918	3R_6342918_SNP [dm3] 3R_10517196_SNP [dm6]	T	C	1.293e^-4	0.631	INTRON hth	TF binding site mE1_TFBS_Trl
X	12900896	X_12900896_SNP [dm3] X_13006863_SNP [dm6]	G	T	1.300e^-4	0.631	INTRON rad	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2310627	X_2310627_SNP [dm3] X_2416594_SNP [dm6]	T	C	1.304e^-4	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_sens
X	17952250	X_17952250_SNP [dm3] X_18058217_SNP [dm6]	G	A	1.312e^-4	0.631	INTRON Sh
2R	12180047	2R_12180047_SNP [dm3] 2R_16292542_SNP [dm6]	G	A	1.314e^-4	0.631	NON_SYNONYMOUS_CODING CG7747 DOWNSTREAM CG30100 & 1 other
X	21923107	X_21923107_SNP [dm3] X_22521271_SNP [dm6]	A	C	1.315e^-4	0.631	INTRON CG17600
2R	15949732	2R_15949732_DEL [dm3] 2R_20062227_DEL [dm6]	TGTATAGT	T	1.319e^-4	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	441713	3L_441713_SNP [dm3] 3L_441713_SNP [dm6]	G	A	1.324e^-4	0.631	UPSTREAM klar DOWNSTREAM klar INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Trl
3L	14813948	3L_14813948_SNP [dm3] 3L_14820848_SNP [dm6]	G	A	1.332e^-4	0.631	INTRON CG17839
3L	1151921	3L_1151921_SNP [dm3] 3L_1151921_SNP [dm6]	T	G	1.332e^-4	0.631	INTRON bab2
3R	8126599	3R_8126599_SNP [dm3] 3R_12300877_SNP [dm6]	T	G	1.332e^-4	0.631	INTRON svp	TF binding site mE1_TFBS_cad
2R	8134266	2R_8134266_SNP [dm3] 2R_12246761_SNP [dm6]	C	T	1.333e^-4	0.631	EXON CR44315
2L	19941028	2L_19941028_SNP [dm3] 2L_19941028_SNP [dm6]	G	A	1.337e^-4	0.631	INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15483291	3L_15483291_SNP [dm3] 3L_15490191_SNP [dm6]	A	T	1.341e^-4	0.631	INTERGENIC
3L	7257565	3L_7257565_SNP [dm3] 3L_7264465_SNP [dm6]	C	T	1.341e^-4	0.631	UPSTREAM CG14830 INTERGENIC
3R	23777424	3R_23777424_SNP [dm3] 3R_27951702_SNP [dm6]	C	T	1.342e^-4	0.631	SYNONYMOUS_CODING Gp93 DOWNSTREAM CG4951	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19496781	3L_19496781_SNP [dm3] 3L_19503681_SNP [dm6]	G	A	1.344e^-4	0.631	START_GAINED CG9452 UTR_5_PRIME CG9452
3R	5121979	3R_5121979_SNP [dm3] 3R_9296257_SNP [dm6]	T	G	1.344e^-4	0.631	INTRON CG8861
X	4093952	X_4093952_SNP [dm3] X_4199919_SNP [dm6]	A	T	1.357e^-4	0.631	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	14271099	2R_14271099_SNP [dm3] 2R_18383594_SNP [dm6]	G	A	1.368e^-4	0.631	UPSTREAM IM1 & 2 others INTERGENIC
X	13026315	X_13026315_DEL [dm3] X_13132282_DEL [dm6]	TCAATTTAT	T	1.372e^-4	0.631	INTRON MFS10 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	26485874	3R_26485874_SNP [dm3] 3R_30660152_SNP [dm6]	C	A	1.372e^-4	0.631	INTERGENIC
2L	5883882	2L_5883882_SNP [dm3] 2L_5883882_SNP [dm6]	C	A	1.373e^-4	0.631	NON_SYNONYMOUS_CODING CG44574 DOWNSTREAM Sfp26Ac
3R	24367595	3R_24367595_SNP [dm3] 3R_28541873_SNP [dm6]	G	A	1.373e^-4	0.631	DOWNSTREAM CG12413 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2L	19880293	2L_19880293_SNP [dm3] 2L_19880293_SNP [dm6]	A	T	1.390e^-4	0.631	INTRON sick
2R	16289319	2R_16289319_SNP [dm3] 2R_20401814_SNP [dm6]	C	T	1.398e^-4	0.631	INTERGENIC
3R	13600672	3R_13600672_SNP [dm3] 3R_17774950_SNP [dm6]	C	T	1.406e^-4	0.631	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13310290	3L_13310290_SNP [dm3] 3L_13317190_SNP [dm6]	T	G	1.406e^-4	0.631	INTERGENIC
3L	9510193	3L_9510193_SNP [dm3] 3L_9517093_SNP [dm6]	C	A	1.414e^-4	0.631	INTRON CG33700
3L	4737892	3L_4737892_SNP [dm3] 3L_4737892_SNP [dm6]	T	C	1.415e^-4	0.631	INTRON RhoGEF64C
2L	6143391	2L_6143391_SNP [dm3] 2L_6143391_SNP [dm6]	C	T	1.419e^-4	0.631	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6841546	2L_6841546_SNP [dm3] 2L_6841546_SNP [dm6]	A	G	1.422e^-4	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20161833	2R_20161833_SNP [dm3] 2R_24274310_SNP [dm6]	C	T	1.427e^-4	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	18562668	3R_18562668_SNP [dm3] 3R_22736946_SNP [dm6]	G	T	1.434e^-4	0.631	NON_SYNONYMOUS_CODING Dcr-1
2R	17696865	2R_17696865_SNP [dm3] 2R_21809360_SNP [dm6]	C	G	1.441e^-4	0.631	INTERGENIC
2L	22020494	2L_22020494_SNP [dm3] 2L_22020494_SNP [dm6]	A	G	1.441e^-4	0.631	DOWNSTREAM CR33987 INTRON tio	TF binding site mE1_TFBS_Trl
2R	4952865	2R_4952865_SNP [dm3] 2R_9065360_SNP [dm6]	G	A	1.442e^-4	0.631	INTRON ana	regulatory region REDfly_CRMs
2L	20330603	2L_20330603_SNP [dm3] 2L_20330603_SNP [dm6]	C	T	1.443e^-4	0.631	INTRON spir
3L	14815465	3L_14815465_SNP [dm3] 3L_14822365_SNP [dm6]	G	A	1.443e^-4	0.631	INTRON CG17839
3R	26109844	3R_26109844_SNP [dm3] 3R_30284122_SNP [dm6]	T	C	1.445e^-4	0.631	INTRON hdc
3L	10260393	3L_10260393_SNP [dm3] 3L_10267293_SNP [dm6]	A	G	1.445e^-4	0.631	UPSTREAM can INTERGENIC	regulatory region REDfly_CRMs
2L	13977671	2L_13977671_SNP [dm3] 2L_13977671_SNP [dm6]	T	A	1.450e^-4	0.631	UPSTREAM NimC1 INTRON Cyp28a5	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	22100461	3L_22100461_DEL [dm3] 3L_22107361_DEL [dm6]	CC	C	1.451e^-4	0.631	INTERGENIC
2L	9257732	2L_9257732_SNP [dm3] 2L_9257732_SNP [dm6]	T	A	1.455e^-4	0.631	INTRON Ggamma30A
X	16690541	X_16690541_SNP [dm3] X_16796508_SNP [dm6]	T	C	1.458e^-4	0.631	UTR_3_PRIME CG4768 DOWNSTREAM CG9132 & 1 other
X	9816859	X_9816859_DEL [dm3] X_9922826_DEL [dm6]	CC	C	1.459e^-4	0.631	INTERGENIC
3L	20187404	3L_20187404_SNP [dm3] 3L_20194304_SNP [dm6]	A	G	1.462e^-4	0.631	INTRON CG42674
2R	4952874	2R_4952874_SNP [dm3] 2R_9065369_SNP [dm6]	G	A	1.463e^-4	0.631	INTRON ana	regulatory region REDfly_CRMs
2L	6743782	2L_6743782_INS [dm3] 2L_6743782_INS [dm6]	A	ACTA	1.468e^-4	0.631	DOWNSTREAM CG31910 INTRON CG11221
3R	12972958	3R_12972958_SNP [dm3] 3R_17147236_SNP [dm6]	C	T	1.471e^-4	0.631	SYNONYMOUS_CODING m-cup
3R	14368829	3R_14368829_SNP [dm3] 3R_18543107_SNP [dm6]	T	A	1.471e^-4	0.631	INTRON fru
3L	11841320	3L_11841320_SNP [dm3] 3L_11848220_SNP [dm6]	G	T	1.476e^-4	0.631	UPSTREAM CG12521 INTERGENIC	transposable element FlyBase
2L	19830675	2L_19830675_SNP [dm3] 2L_19830675_SNP [dm6]	G	C	1.488e^-4	0.631	INTRON sick
2R	17697040	2R_17697040_SNP [dm3] 2R_21809535_SNP [dm6]	G	T	1.494e^-4	0.631	INTERGENIC
3L	7257568	3L_7257568_SNP [dm3] 3L_7264468_SNP [dm6]	G	A	1.499e^-4	0.631	UPSTREAM CG14830 INTERGENIC
3R	24710725	3R_24710725_SNP [dm3] 3R_28885003_SNP [dm6]	C	T	1.500e^-4	0.631	SYNONYMOUS_CODING CG14526 INTRON CG33203	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18010238	2R_18010238_SNP [dm3] 2R_22122733_SNP [dm6]	C	T	1.502e^-4	0.631	UPSTREAM mei-S332 & 1 other INTRON mei-S332	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7257564	3L_7257564_SNP [dm3] 3L_7264464_SNP [dm6]	C	T	1.503e^-4	0.631	UPSTREAM CG14830 INTERGENIC
2R	18010243	2R_18010243_SNP [dm3] 2R_22122738_SNP [dm6]	G	A	1.514e^-4	0.631	UPSTREAM mei-S332 & 1 other INTRON mei-S332	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4657939	2L_4657939_SNP [dm3] 2L_4657939_SNP [dm6]	C	T	1.518e^-4	0.631	INTERGENIC
3L	806508	3L_806508_SNP [dm3] 3L_806508_SNP [dm6]	A	C	1.521e^-4	0.631	INTERGENIC
3L	22099562	3L_22099562_SNP [dm3] 3L_22106462_SNP [dm6]	C	T	1.522e^-4	0.631	INTERGENIC
3R	22671390	3R_22671390_SNP [dm3] 3R_26845668_SNP [dm6]	A	G	1.525e^-4	0.631	INTRON Lerp
3R	25405876	3R_25405876_SNP [dm3] 3R_29580154_SNP [dm6]	A	G	1.531e^-4	0.631	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	7935684	2L_7935684_SNP [dm3] 2L_7935684_SNP [dm6]	C	G	1.536e^-4	0.631	INTRON Snoo
3L	5372382	3L_5372382_SNP [dm3] 3L_5379282_SNP [dm6]	G	A	1.536e^-4	0.631	SYNONYMOUS_CODING Ir64a DOWNSTREAM CR45743
3R	11586547	3R_11586547_SNP [dm3] 3R_15760825_SNP [dm6]	G	A	1.536e^-4	0.631	INTERGENIC
2R	9356682	2R_9356682_SNP [dm3] 2R_13469177_SNP [dm6]	A	C	1.539e^-4	0.631	INTRON arr	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu
3L	13549841	3L_13549841_SNP [dm3] 3L_13556741_SNP [dm6]	A	G	1.539e^-4	0.631	INTRON bru-3
X	19931756	X_19931756_INS [dm3] X_20037723_INS [dm6]	T	TGTACATAC	1.544e^-4	0.631	INTRON Dop2R
2L	18848488	2L_18848488_SNP [dm3] 2L_18848488_SNP [dm6]	A	C	1.545e^-4	0.631	INTRON CG17321
2R	12179481	2R_12179481_SNP [dm3] 2R_16291976_SNP [dm6]	C	A	1.546e^-4	0.631	SYNONYMOUS_CODING CG30100 UTR_3_PRIME CG42372 UPSTREAM CR43730 DOWNSTREAM CG7747 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5883903	2L_5883903_SNP [dm3] 2L_5883903_SNP [dm6]	A	G	1.551e^-4	0.631	NON_SYNONYMOUS_CODING CG44574 UPSTREAM CG43185 DOWNSTREAM Sfp26Ac
2L	1479197	2L_1479197_SNP [dm3] 2L_1479197_SNP [dm6]	C	T	1.553e^-4	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18916964	2L_18916964_SNP [dm3] 2L_18916964_SNP [dm6]	C	T	1.556e^-4	0.631	UTR_3_PRIME ssp3
3L	7013407	3L_7013407_SNP [dm3] 3L_7020307_SNP [dm6]	A	T	1.562e^-4	0.631	INTRON Mp
3L	7257559	3L_7257559_SNP [dm3] 3L_7264459_SNP [dm6]	G	A	1.567e^-4	0.631	UPSTREAM CG14830 INTERGENIC
2L	9257385	2L_9257385_SNP [dm3] 2L_9257385_SNP [dm6]	T	C	1.568e^-4	0.631	INTRON Ggamma30A	TF binding site BDTNP1_TFBS_z
X	21371273	X_21371273_SNP [dm3] X_21500246_SNP [dm6]	C	A	1.574e^-4	0.631	INTRON CR45082
3L	1103352	3L_1103352_INS [dm3] 3L_1103352_INS [dm6]	T	TGTAT	1.578e^-4	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	15134591	3R_15134591_SNP [dm3] 3R_19308869_SNP [dm6]	T	C	1.596e^-4	0.631	INTRON Dl
X	12590662	X_12590662_SNP [dm3] X_12696629_SNP [dm6]	A	T	1.600e^-4	0.631	INTRON Smr	TF binding site BDTNP1_TFBS_dl
2L	19802428	2L_19802428_SNP [dm3] 2L_19802428_SNP [dm6]	A	G	1.606e^-4	0.631	INTRON sick
2L	7109133	2L_7109133_SNP [dm3] 2L_7109133_SNP [dm6]	T	G	1.608e^-4	0.631	INTRON Pvf3
2R	19533244	2R_19533244_SNP [dm3] 2R_23645721_SNP [dm6]	G	A	1.609e^-4	0.631	UPSTREAM retn INTRON retn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	15874982	2R_15874982_SNP [dm3] 2R_19987477_SNP [dm6]	C	T	1.610e^-4	0.631	INTERGENIC
2L	18944951	2L_18944951_SNP [dm3] 2L_18944951_SNP [dm6]	T	C	1.610e^-4	0.631	UPSTREAM ssp3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	8941608	2L_8941608_SNP [dm3] 2L_8941608_SNP [dm6]	C	A	1.611e^-4	0.631	SYNONYMOUS_CODING CG9510 DOWNSTREAM CG9515	TF binding site mE1_TFBS_cad
3R	10212692	3R_10212692_SNP [dm3] 3R_14386970_SNP [dm6]	G	A	1.611e^-4	0.631	INTERGENIC
X	19344001	X_19344001_SNP [dm3] X_19449968_SNP [dm6]	A	C	1.613e^-4	0.631	INTRON kek5
3L	2355003	3L_2355003_SNP [dm3] 3L_2355003_SNP [dm6]	A	G	1.614e^-4	0.631	INTERGENIC	TF binding site mE1_TFBS_inv
3L	10626334	3L_10626334_SNP [dm3] 3L_10633234_SNP [dm6]	C	T	1.616e^-4	0.631	SYNONYMOUS_CODING hay INTRON CG34001
2L	5903120	2L_5903120_SNP [dm3] 2L_5903120_SNP [dm6]	C	T	1.618e^-4	0.631	DOWNSTREAM CG9021 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8480553	3R_8480553_SNP [dm3] 3R_12654831_SNP [dm6]	T	C	1.623e^-4	0.631	UTR_5_PRIME CG6225 INTRON CG6225	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	442004	3L_442004_SNP [dm3] 3L_442004_SNP [dm6]	G	A	1.624e^-4	0.631	UPSTREAM klar DOWNSTREAM klar INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
X	19011994	X_19011994_SNP [dm3] X_19117961_SNP [dm6]	C	T	1.626e^-4	0.631	INTERGENIC
2L	5901099	2L_5901099_SNP [dm3] 2L_5901099_SNP [dm6]	T	A	1.628e^-4	0.631	UPSTREAM CR44579 INTERGENIC
3L	14811233	3L_14811233_SNP [dm3] 3L_14818133_SNP [dm6]	C	T	1.628e^-4	0.631	INTRON CG17839
X	19921473	X_19921473_INS [dm3] X_20027440_INS [dm6]	A	AGCTGTCGAGATCTAA...	1.635e^-4	0.631	INTRON Dop2R
2L	19817600	2L_19817600_SNP [dm3] 2L_19817600_SNP [dm6]	A	C	1.638e^-4	0.631	INTRON sick	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	19841857	2L_19841857_SNP [dm3] 2L_19841857_SNP [dm6]	T	C	1.638e^-4	0.631	INTRON sick
3L	11132888	3L_11132888_SNP [dm3] 3L_11139788_SNP [dm6]	G	A	1.642e^-4	0.631	INTRON CG32082
3R	26841834	3R_26841834_SNP [dm3] 3R_31016112_SNP [dm6]	T	C	1.647e^-4	0.631	INTRON 5-HT7
X	4094376	X_4094376_SNP [dm3] X_4200343_SNP [dm6]	G	A	1.651e^-4	0.631	INTRON Fas2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7257534	3L_7257534_SNP [dm3] 3L_7264434_SNP [dm6]	T	A	1.652e^-4	0.631	UPSTREAM CG14830 INTERGENIC
3R	3719215	3R_3719215_SNP [dm3] 3R_7893493_SNP [dm6]	A	G	1.653e^-4	0.631	INTRON mRpS9 & 1 other
2R	11487984	2R_11487984_SNP [dm3] 2R_15600479_SNP [dm6]	G	A	1.654e^-4	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	7934932	2L_7934932_SNP [dm3] 2L_7934932_SNP [dm6]	A	C	1.658e^-4	0.631	INTRON Snoo
3R	10914325	3R_10914325_SNP [dm3] 3R_15088603_SNP [dm6]	A	G	1.663e^-4	0.631	INTRON CG6966
3L	15483300	3L_15483300_SNP [dm3] 3L_15490200_SNP [dm6]	A	C	1.670e^-4	0.631	INTERGENIC
3L	6846539	3L_6846539_SNP [dm3] 3L_6853439_SNP [dm6]	C	T	1.675e^-4	0.631	INTERGENIC
2L	1542729	2L_1542729_SNP [dm3] 2L_1542729_SNP [dm6]	C	T	1.679e^-4	0.631	INTERGENIC
3L	392009	3L_392009_SNP [dm3] 3L_392009_SNP [dm6]	T	A	1.679e^-4	0.631	INTRON trh EXON CR45378
3L	109064	3L_109064_SNP [dm3] 3L_109064_SNP [dm6]	A	G	1.683e^-4	0.631	INTERGENIC
3L	16202527	3L_16202527_SNP [dm3] 3L_16209427_SNP [dm6]	C	T	1.686e^-4	0.631	INTERGENIC
3L	12615746	3L_12615746_MNP [dm3] 3L_12622646_MNP [dm6]	GAA	AGC	1.688e^-4	0.631	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	17672015	3L_17672015_SNP [dm3] 3L_17678915_SNP [dm6]	A	T	1.690e^-4	0.631	INTRON CG34251
2L	16135106	2L_16135106_DEL [dm3] 2L_16135106_DEL [dm6]	ATGAAA	A	1.693e^-4	0.631	DOWNSTREAM CR44871 & 1 other INTRON CG34168
3R	13600041	3R_13600041_SNP [dm3] 3R_17774319_SNP [dm6]	C	T	1.694e^-4	0.631	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
2R	14271140	2R_14271140_SNP [dm3] 2R_18383635_SNP [dm6]	A	T	1.695e^-4	0.631	UPSTREAM IM1 & 2 others INTERGENIC
2L	19890126	2L_19890126_SNP [dm3] 2L_19890126_SNP [dm6]	T	G	1.697e^-4	0.631	DOWNSTREAM CG10481 INTRON sick
X	19012009	X_19012009_SNP [dm3] X_19117976_SNP [dm6]	A	G	1.702e^-4	0.631	INTERGENIC
3R	23285738	3R_23285738_SNP [dm3] 3R_27460016_SNP [dm6]	T	A	1.703e^-4	0.631	INTERGENIC
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	1.705e^-4	0.631	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	20316216	3R_20316216_DEL [dm3] 3R_24490494_DEL [dm6]	TT	T	1.710e^-4	0.631	INTRON nAChRalpha2
3R	24710863	3R_24710863_SNP [dm3] 3R_28885141_SNP [dm6]	C	G	1.711e^-4	0.631	SYNONYMOUS_CODING CG14526 INTRON CG33203	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3872313	3L_3872313_SNP [dm3] 3L_3872313_SNP [dm6]	A	G	1.713e^-4	0.631	INTERGENIC
3L	443138	3L_443138_SNP [dm3] 3L_443138_SNP [dm6]	C	T	1.713e^-4	0.631	NON_SYNONYMOUS_CODING klar INTRON klar	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	19940949	2L_19940949_SNP [dm3] 2L_19940949_SNP [dm6]	A	T	1.722e^-4	0.633	INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11578481	2R_11578481_SNP [dm3] 2R_15690976_SNP [dm6]	T	C	1.730e^-4	0.634	UTR_3_PRIME CG30090 UPSTREAM CG30088 DOWNSTREAM CR44372
X	13998264	X_13998264_SNP [dm3] X_14104231_SNP [dm6]	C	G	1.732e^-4	0.634	UPSTREAM tRNA:S4:12Ee & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25570319	3R_25570319_SNP [dm3] 3R_29744597_SNP [dm6]	A	G	1.746e^-4	0.638	SYNONYMOUS_CODING CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19200358	3R_19200358_SNP [dm3] 3R_23374636_SNP [dm6]	A	G	1.751e^-4	0.639	DOWNSTREAM CG42828 INTERGENIC
3R	19279708	3R_19279708_SNP [dm3] 3R_23453986_SNP [dm6]	G	A	1.757e^-4	0.639	INTRON CG4374
3L	806506	3L_806506_SNP [dm3] 3L_806506_SNP [dm6]	T	A	1.759e^-4	0.639	INTERGENIC
3L	391931	3L_391931_INS [dm3] 3L_391931_INS [dm6]	A	ATTGGATAATTG...	1.763e^-4	0.639	DOWNSTREAM CR45378 INTRON trh
3L	13272867	3L_13272867_SNP [dm3] 3L_13279767_SNP [dm6]	A	G	1.767e^-4	0.639	UPSTREAM tRNA:CR32123:Psi DOWNSTREAM caps INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18229379	2R_18229379_SNP [dm3] 2R_22341874_SNP [dm6]	T	A	1.769e^-4	0.639	INTRON Liprin-gamma	TF binding site mE1_TFBS_cad
3R	3966070	3R_3966070_SNP [dm3] 3R_8140348_SNP [dm6]	T	A	1.773e^-4	0.639	UPSTREAM tRNA:N5:84F & 2 others DOWNSTREAM tRNA:R2:84Fc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	7213850	2L_7213850_SNP [dm3] 2L_7213850_SNP [dm6]	A	T	1.777e^-4	0.639	INTRON CG13784	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	7679876	X_7679876_SNP [dm3] X_7785843_SNP [dm6]	G	T	1.780e^-4	0.639	INTERGENIC
3R	4332923	3R_4332923_SNP [dm3] 3R_8507201_SNP [dm6]	C	T	1.791e^-4	0.64	INTERGENIC
3L	7257549	3L_7257549_SNP [dm3] 3L_7264449_SNP [dm6]	T	A	1.792e^-4	0.64	UPSTREAM CG14830 INTERGENIC
3R	10437715	3R_10437715_SNP [dm3] 3R_14611993_SNP [dm6]	G	C	1.796e^-4	0.64	INTRON CG14853
2L	16583209	2L_16583209_SNP [dm3] 2L_16583209_SNP [dm6]	C	G	1.810e^-4	0.64	INTRON CG42389	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	7461526	X_7461526_SNP [dm3] X_7567493_SNP [dm6]	G	A	1.814e^-4	0.64	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	21055222	2L_21055222_SNP [dm3] 2L_21055222_SNP [dm6]	A	T	1.814e^-4	0.64	NON_SYNONYMOUS_CODING Itgbetanu	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1474417	2L_1474417_SNP [dm3] 2L_1474417_SNP [dm6]	C	T	1.818e^-4	0.64	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4736899	3L_4736899_SNP [dm3] 3L_4736899_SNP [dm6]	G	A	1.821e^-4	0.64	INTRON RhoGEF64C
3L	17103452	3L_17103452_SNP [dm3] 3L_17110352_SNP [dm6]	T	C	1.823e^-4	0.64	INTRON Rbp6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21395653	3R_21395653_SNP [dm3] 3R_25569931_SNP [dm6]	G	A	1.824e^-4	0.64	INTRON msi
3L	11132648	3L_11132648_SNP [dm3] 3L_11139548_SNP [dm6]	T	C	1.830e^-4	0.64	INTRON CG32082
2L	7213853	2L_7213853_SNP [dm3] 2L_7213853_SNP [dm6]	C	G	1.833e^-4	0.64	INTRON CG13784	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16135128	2L_16135128_SNP [dm3] 2L_16135128_SNP [dm6]	T	A	1.835e^-4	0.64	DOWNSTREAM CR44871 & 1 other INTRON CG34168
3R	12502299	3R_12502299_SNP [dm3] 3R_16676577_SNP [dm6]	C	A	1.839e^-4	0.64	INTRON Ubx	TF binding site mE1_TFBS_cad
3L	332458	3L_332458_SNP [dm3] 3L_332458_SNP [dm6]	T	C	1.844e^-4	0.64	UPSTREAM mthl9 DOWNSTREAM mthl10 INTRON Ptpmeg	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	24019795	3R_24019795_SNP [dm3] 3R_28194073_SNP [dm6]	G	A	1.849e^-4	0.64	INTRON CG34354
2R	3665693	2R_3665693_SNP [dm3] 2R_7778188_SNP [dm6]	A	T	1.859e^-4	0.64	INTRON CG30497 & 1 other
2R	17727818	2R_17727818_SNP [dm3] 2R_21840313_SNP [dm6]	A	T	1.865e^-4	0.64	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13917272	2R_13917272_SNP [dm3] 2R_18029767_SNP [dm6]	C	T	1.866e^-4	0.64	INTERGENIC
X	21371229	X_21371229_SNP [dm3] X_21500202_SNP [dm6]	C	A	1.871e^-4	0.64	INTRON CR45082
3R	14368832	3R_14368832_SNP [dm3] 3R_18543110_SNP [dm6]	T	A	1.873e^-4	0.64	INTRON fru
3L	9689632	3L_9689632_INS [dm3] 3L_9696532_INS [dm6]	G	AA	1.875e^-4	0.64	DOWNSTREAM CR45121 INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	21944889	X_21944889_SNP [dm3] X_22543053_SNP [dm6]	T	C	1.885e^-4	0.64	NON_SYNONYMOUS_CODING CG17599	TF binding site mE1_TFBS_HSA
3L	3912523	3L_3912523_INS [dm3] 3L_3912523_INS [dm6]	T	TTTGTGGGCGAAGTGGAT...	1.889e^-4	0.64	INTRON Eip63F-1
2L	19843891	2L_19843891_SNP [dm3] 2L_19843891_SNP [dm6]	G	A	1.892e^-4	0.64	INTRON sick
3L	11841363	3L_11841363_DEL [dm3] 3L_11848263_DEL [dm6]	GG	A	1.894e^-4	0.64	UPSTREAM CG12521 INTERGENIC	transposable element FlyBase
2R	17120729	2R_17120729_SNP [dm3] 2R_21233224_SNP [dm6]	A	G	1.895e^-4	0.64	INTRON ASPP
3R	25570751	3R_25570751_SNP [dm3] 3R_29745029_SNP [dm6]	A	C	1.898e^-4	0.64	START_GAINED CG7609 UTR_5_PRIME CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	588419	2L_588419_SNP [dm3] 2L_588419_SNP [dm6]	T	A	1.899e^-4	0.64	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
3L	9726588	3L_9726588_SNP [dm3] 3L_9733488_SNP [dm6]	G	A	1.910e^-4	0.64	DOWNSTREAM mir-4986 & 1 other INTRON CG6749
2L	21802210	2L_21802210_SNP [dm3] 2L_21802210_SNP [dm6]	G	A	1.912e^-4	0.64	INTERGENIC
3R	23285737	3R_23285737_SNP [dm3] 3R_27460015_SNP [dm6]	C	T	1.914e^-4	0.64	INTERGENIC
2L	19830685	2L_19830685_SNP [dm3] 2L_19830685_SNP [dm6]	G	T	1.915e^-4	0.64	INTRON sick
3R	1264892	3R_1264892_SNP [dm3] 3R_5439170_SNP [dm6]	A	G	1.920e^-4	0.64	INTRON CG14669	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3L	709549	3L_709549_SNP [dm3] 3L_709549_SNP [dm6]	A	T	1.922e^-4	0.64	SPLICE_SITE_REGION CkIIalpha-i3 INTRON CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
2L	19797389	2L_19797389_SNP [dm3] 2L_19797389_SNP [dm6]	T	C	1.927e^-4	0.64	INTRON sick
X	5663849	X_5663849_SNP [dm3] X_5769816_SNP [dm6]	G	A	1.935e^-4	0.64	INTRON CG42699 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	19880283	2L_19880283_SNP [dm3] 2L_19880283_SNP [dm6]	C	A	1.936e^-4	0.64	INTRON sick
X	2933414	X_2933414_SNP [dm3] X_3039381_SNP [dm6]	A	C	1.938e^-4	0.64	INTRON kirre
2L	1276469	2L_1276469_SNP [dm3] 2L_1276469_SNP [dm6]	T	A	1.939e^-4	0.64	INTRON robo3
2L	3881371	2L_3881371_SNP [dm3] 2L_3881371_SNP [dm6]	T	G	1.944e^-4	0.64	INTRON capu	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11223898	3L_11223898_SNP [dm3] 3L_11230798_SNP [dm6]	G	T	1.951e^-4	0.64	DOWNSTREAM CR45405 & 1 other INTERGENIC
3L	11223228	3L_11223228_DEL [dm3] 3L_11230128_DEL [dm6]	CGATG	C	1.954e^-4	0.64	UTR_3_PRIME CG42671 DOWNSTREAM CG42671
X	21948498	X_21948498_SNP [dm3] X_22546662_SNP [dm6]	A	G	1.965e^-4	0.64	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_kn
2L	19898598	2L_19898598_SNP [dm3] 2L_19898598_SNP [dm6]	C	T	1.965e^-4	0.64	INTRON sick
X	17503877	X_17503877_SNP [dm3] X_17609844_SNP [dm6]	G	T	1.970e^-4	0.64	INTERGENIC
3R	14646313	3R_14646313_SNP [dm3] 3R_18820591_SNP [dm6]	G	A	1.971e^-4	0.64	INTRON CG18208
3R	5890647	3R_5890647_SNP [dm3] 3R_10064925_SNP [dm6]	G	C	1.979e^-4	0.64	DOWNSTREAM CG33631 INTERGENIC
2L	16102044	2L_16102044_DEL [dm3] 2L_16102044_DEL [dm6]	AG	A	1.980e^-4	0.64	INTERGENIC
3L	11223911	3L_11223911_SNP [dm3] 3L_11230811_SNP [dm6]	C	T	1.981e^-4	0.64	DOWNSTREAM CR45405 & 1 other INTERGENIC
2L	16135146	2L_16135146_SNP [dm3] 2L_16135146_SNP [dm6]	T	A	1.981e^-4	0.64	DOWNSTREAM CR44871 & 1 other INTRON CG34168
2L	9853724	2L_9853724_SNP [dm3] 2L_9853724_SNP [dm6]	C	G	1.981e^-4	0.64	INTRON nAChRalpha6
3L	9515098	3L_9515098_SNP [dm3] 3L_9521998_SNP [dm6]	A	G	1.986e^-4	0.64	INTRON CG33700
2L	6597895	2L_6597895_SNP [dm3] 2L_6597895_SNP [dm6]	T	A	1.987e^-4	0.64	INTRON CG11319
3L	22105899	3L_22105899_SNP [dm3] 3L_22112799_SNP [dm6]	C	T	1.989e^-4	0.64	INTERGENIC
3L	7480613	3L_7480613_SNP [dm3] 3L_7487513_SNP [dm6]	A	G	1.996e^-4	0.64	INTRON mthl6
2R	5980518	2R_5980518_SNP [dm3] 2R_10093013_SNP [dm6]	A	G	2.003e^-4	0.64	INTRON CG2269
3R	965045	3R_965045_SNP [dm3] 3R_5139323_SNP [dm6]	G	A	2.004e^-4	0.64	UPSTREAM CG12589 INTERGENIC
3R	27112009	3R_27112009_SNP [dm3] 3R_31286287_SNP [dm6]	C	T	2.010e^-4	0.64	INTERGENIC
2L	21193087	2L_21193087_SNP [dm3] 2L_21193087_SNP [dm6]	G	T	2.011e^-4	0.64	INTRON Ret	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	5519040	2L_5519040_SNP [dm3] 2L_5519040_SNP [dm6]	G	C	2.017e^-4	0.64	SYNONYMOUS_CODING CG7382 DOWNSTREAM CG14020	TF binding site BDTNP1_TFBS_hb mE1_TFBS_sens
2L	19835275	2L_19835275_SNP [dm3] 2L_19835275_SNP [dm6]	C	T	2.020e^-4	0.64	INTRON sick
2R	14172514	2R_14172514_SNP [dm3] 2R_18285009_SNP [dm6]	T	A	2.022e^-4	0.64	DOWNSTREAM sbb INTRON sbb
2L	16239804	2L_16239804_SNP [dm3] 2L_16239804_SNP [dm6]	C	T	2.024e^-4	0.64	INTRON CG42817
3R	21344585	3R_21344585_SNP [dm3] 3R_25518863_SNP [dm6]	G	T	2.029e^-4	0.64	INTRON msi	TF binding site mE1_TFBS_Trl
2R	11571818	2R_11571818_SNP [dm3] 2R_15684313_SNP [dm6]	C	T	2.034e^-4	0.64	SYNONYMOUS_CODING Ranbp11 DOWNSTREAM CG30082 EXON CR43429	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13951094	2L_13951094_SNP [dm3] 2L_13951094_SNP [dm6]	A	G	2.038e^-4	0.64	INTRON Ance-3
2L	19816328	2L_19816328_SNP [dm3] 2L_19816328_SNP [dm6]	T	C	2.042e^-4	0.64	UPSTREAM snRNA:U5:38ABb & 1 other INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7156753	3L_7156753_SNP [dm3] 3L_7163653_SNP [dm6]	G	A	2.042e^-4	0.64	INTRON Dscam2
3L	7156769	3L_7156769_SNP [dm3] 3L_7163669_SNP [dm6]	G	A	2.042e^-4	0.64	INTRON Dscam2
2L	19922511	2L_19922511_SNP [dm3] 2L_19922511_SNP [dm6]	A	G	2.052e^-4	0.64	UPSTREAM CR43827 DOWNSTREAM CR43828 INTRON sick
3R	26671686	3R_26671686_SNP [dm3] 3R_30845964_SNP [dm6]	T	A	2.058e^-4	0.64	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	19825505	2L_19825505_SNP [dm3] 2L_19825505_SNP [dm6]	A	C	2.067e^-4	0.64	UPSTREAM sick INTRON sick
3L	22065675	3L_22065675_SNP [dm3] 3L_22072575_SNP [dm6]	A	T	2.074e^-4	0.64	UPSTREAM CG7139 DOWNSTREAM CG7133 EXON CR43995	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1035183	3L_1035183_SNP [dm3] 3L_1035183_SNP [dm6]	G	A	2.076e^-4	0.64	UPSTREAM CG9205 & 1 other INTRON CG9205	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	22229175	3R_22229175_SNP [dm3] 3R_26403453_SNP [dm6]	A	G	2.079e^-4	0.64	NON_SYNONYMOUS_CODING ppk15
2R	6798037	2R_6798037_SNP [dm3] 2R_10910532_SNP [dm6]	T	C	2.080e^-4	0.64	DOWNSTREAM Obp47a INTERGENIC
2R	6669458	2R_6669458_SNP [dm3] 2R_10781953_SNP [dm6]	T	A	2.080e^-4	0.64	UPSTREAM CR44299 INTRON CG33144	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	25614556	3R_25614556_INS [dm3] 3R_29788834_INS [dm6]	A	ACATA	2.081e^-4	0.64	UPSTREAM kay INTRON kay
3L	15016273	3L_15016273_SNP [dm3] 3L_15023173_SNP [dm6]	T	A	2.084e^-4	0.64	UPSTREAM CG32148 INTRON Sytbeta
3R	7278969	3R_7278969_SNP [dm3] 3R_11453247_SNP [dm6]	A	G	2.086e^-4	0.64	SYNONYMOUS_CODING PGRP-LB INTRON CG17230	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16235827	2L_16235827_SNP [dm3] 2L_16235827_SNP [dm6]	T	G	2.086e^-4	0.64	SYNONYMOUS_CODING CG42817	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	17089642	3L_17089642_SNP [dm3] 3L_17096542_SNP [dm6]	G	A	2.089e^-4	0.64	INTRON Rbp6
3L	22043497	3L_22043497_DEL [dm3] 3L_22050397_DEL [dm6]	CC	C	2.090e^-4	0.64	INTRON Oct-TyrR
3L	22085444	3L_22085444_SNP [dm3] 3L_22092344_SNP [dm6]	C	T	2.090e^-4	0.64	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	22086131	3L_22086131_SNP [dm3] 3L_22093031_SNP [dm6]	A	G	2.090e^-4	0.64	INTERGENIC
3L	22086458	3L_22086458_SNP [dm3] 3L_22093358_SNP [dm6]	G	A	2.090e^-4	0.64	INTERGENIC
3L	22106630	3L_22106630_SNP [dm3] 3L_22113530_SNP [dm6]	C	G	2.090e^-4	0.64	INTERGENIC
2R	13093455	2R_13093455_SNP [dm3] 2R_17205950_SNP [dm6]	G	T	2.091e^-4	0.64	DOWNSTREAM CG43237 INTERGENIC
2R	17697025	2R_17697025_SNP [dm3] 2R_21809520_SNP [dm6]	A	T	2.091e^-4	0.64	INTERGENIC
2R	19502482	2R_19502482_SNP [dm3] 2R_23614959_SNP [dm6]	T	C	2.093e^-4	0.64	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
X	5660805	X_5660805_SNP [dm3] X_5766772_SNP [dm6]	C	T	2.096e^-4	0.64	SYNONYMOUS_CODING CG3097 INTRON CG42699	TF binding site mE1_TFBS_sens
2L	19930981	2L_19930981_SNP [dm3] 2L_19930981_SNP [dm6]	A	G	2.101e^-4	0.64	INTRON sick
X	10569521	X_10569521_SNP [dm3] X_10675488_SNP [dm6]	T	A	2.103e^-4	0.64	INTRON X11Lbeta
2R	19889708	2R_19889708_SNP [dm3] 2R_24002185_SNP [dm6]	T	C	2.109e^-4	0.64	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_chinmo
3R	2423460	3R_2423460_SNP [dm3] 3R_6597738_SNP [dm6]	C	T	2.112e^-4	0.64	NON_SYNONYMOUS_CODING CG1138
3L	14919557	3L_14919557_SNP [dm3] 3L_14926457_SNP [dm6]	T	G	2.116e^-4	0.64	UTR_5_PRIME DCX-EMAP INTRON DCX-EMAP	TF binding site mE1_TFBS_cad
3L	9690515	3L_9690515_SNP [dm3] 3L_9697415_SNP [dm6]	T	A	2.124e^-4	0.64	UPSTREAM CG6767 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	15488911	3L_15488911_SNP [dm3] 3L_15495811_SNP [dm6]	A	T	2.128e^-4	0.64	UPSTREAM CG12355 & 1 other INTERGENIC
2L	16759323	2L_16759323_SNP [dm3] 2L_16759323_SNP [dm6]	C	T	2.130e^-4	0.64	INTRON ppk17
2R	19840688	2R_19840688_SNP [dm3] 2R_23953165_SNP [dm6]	T	C	2.142e^-4	0.64	SYNONYMOUS_CODING CG3803 UPSTREAM thoc5 DOWNSTREAM CG2970	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9823760	3R_9823760_SNP [dm3] 3R_13998038_SNP [dm6]	T	C	2.142e^-4	0.64	INTRON rdx	TF binding site mE1_TFBS_HSA
2L	8957052	2L_8957052_SNP [dm3] 2L_8957052_SNP [dm6]	C	A	2.146e^-4	0.64	INTRON CG31886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_zfh1
3R	13682859	3R_13682859_SNP [dm3] 3R_17857137_SNP [dm6]	T	C	2.148e^-4	0.64	INTRON tinc
3L	2325854	3L_2325854_SNP [dm3] 3L_2325854_SNP [dm6]	C	A	2.149e^-4	0.64	INTRON MsR1
2L	15292420	2L_15292420_SNP [dm3] 2L_15292420_SNP [dm6]	T	A	2.151e^-4	0.64	UPSTREAM ms_2_35Ci & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	22112300	3L_22112300_INS [dm3] 3L_22119200_INS [dm6]	C	GCCCCATCTG	2.155e^-4	0.64	INTERGENIC
3L	14410434	3L_14410434_SNP [dm3] 3L_14417334_SNP [dm6]	G	A	2.158e^-4	0.64	INTRON bbg
3R	13016026	3R_13016026_DEL [dm3] 3R_17190304_DEL [dm6]	GAG	G	2.158e^-4	0.64	INTRON Mur89F
3L	9685540	3L_9685540_SNP [dm3] 3L_9692440_SNP [dm6]	A	G	2.159e^-4	0.64	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	7270458	2L_7270458_SNP [dm3] 2L_7270458_SNP [dm6]	A	G	2.162e^-4	0.64	INTRON Wnt4
3R	10813892	3R_10813892_SNP [dm3] 3R_14988170_SNP [dm6]	A	G	2.165e^-4	0.64	INTERGENIC
3R	4362491	3R_4362491_SNP [dm3] 3R_8536769_SNP [dm6]	A	G	2.169e^-4	0.64	INTERGENIC
3R	26772843	3R_26772843_SNP [dm3] 3R_30947121_SNP [dm6]	T	C	2.173e^-4	0.64	INTERGENIC
3R	3036781	3R_3036781_SNP [dm3] 3R_7211059_SNP [dm6]	A	T	2.175e^-4	0.64	INTERGENIC
3L	23307174	3L_23307174_SNP [dm3] 3L_23314074_SNP [dm6]	A	T	2.177e^-4	0.64	INTERGENIC	transposable element FlyBase
3L	16323257	3L_16323257_SNP [dm3] 3L_16330157_SNP [dm6]	T	G	2.180e^-4	0.64	UPSTREAM CG33060 DOWNSTREAM CG13058 INTRON CG33061
2L	21736965	2L_21736965_DEL [dm3] 2L_21736965_DEL [dm6]	AGACTCGGACTGTTT...	A	2.190e^-4	0.641	INTERGENIC	transposable element FlyBase
2L	9103236	2L_9103236_SNP [dm3] 2L_9103236_SNP [dm6]	C	T	2.192e^-4	0.641	INTERGENIC
3L	12615738	3L_12615738_SNP [dm3] 3L_12622638_SNP [dm6]	C	G	2.194e^-4	0.641	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	8763742	2L_8763742_SNP [dm3] 2L_8763742_SNP [dm6]	T	A	2.199e^-4	0.641	INTERGENIC
3L	10626331	3L_10626331_SNP [dm3] 3L_10633231_SNP [dm6]	G	T	2.202e^-4	0.641	SYNONYMOUS_CODING hay INTRON CG34001
3L	17672022	3L_17672022_SNP [dm3] 3L_17678922_SNP [dm6]	C	A	2.208e^-4	0.642	INTRON CG34251
3R	24361523	3R_24361523_SNP [dm3] 3R_28535801_SNP [dm6]	C	A	2.220e^-4	0.644	INTRON Ppn
3L	392008	3L_392008_SNP [dm3] 3L_392008_SNP [dm6]	T	A	2.225e^-4	0.644	INTRON trh EXON CR45378
3R	2382201	3R_2382201_SNP [dm3] 3R_6556479_SNP [dm6]	G	C	2.226e^-4	0.644	INTRON dpr11
3L	3872418	3L_3872418_SNP [dm3] 3L_3872418_SNP [dm6]	A	G	2.240e^-4	0.644	INTERGENIC
X	16690567	X_16690567_SNP [dm3] X_16796534_SNP [dm6]	T	G	2.245e^-4	0.644	UTR_3_PRIME CG4768 DOWNSTREAM CG9132 & 1 other
3L	4094506	3L_4094506_SNP [dm3] 3L_4094506_SNP [dm6]	G	A	2.247e^-4	0.644	UTR_3_PRIME CG14995 DOWNSTREAM CG14990
3L	4094526	3L_4094526_SNP [dm3] 3L_4094526_SNP [dm6]	A	T	2.247e^-4	0.644	UTR_3_PRIME CG14995 DOWNSTREAM CG14990
3R	21330598	3R_21330598_SNP [dm3] 3R_25504876_SNP [dm6]	A	C	2.257e^-4	0.644	UPSTREAM CG5107 DOWNSTREAM CR45651 INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	4956241	2R_4956241_SNP [dm3] 2R_9068736_SNP [dm6]	T	G	2.257e^-4	0.644	UPSTREAM ana INTRON ana
2R	17267393	2R_17267393_SNP [dm3] 2R_21379888_SNP [dm6]	A	C	2.263e^-4	0.644	UPSTREAM cv-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	4400876	3R_4400876_INS [dm3] 3R_8575154_INS [dm6]	T	TT	2.264e^-4	0.644	INTERGENIC
3R	25621372	3R_25621372_SNP [dm3] 3R_29795650_SNP [dm6]	C	T	2.266e^-4	0.644	SYNONYMOUS_CODING sro DOWNSTREAM CG7837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24485802	3R_24485802_SNP [dm3] 3R_28660080_SNP [dm6]	A	G	2.266e^-4	0.644	INTERGENIC
3L	4091291	3L_4091291_SNP [dm3] 3L_4091291_SNP [dm6]	C	A	2.273e^-4	0.644	UTR_3_PRIME CG14989 DOWNSTREAM CG14989
2R	5980533	2R_5980533_DEL [dm3] 2R_10093028_DEL [dm6]	CACAAATTAATGGC...	C	2.274e^-4	0.644	INTRON CG2269
3L	15483419	3L_15483419_SNP [dm3] 3L_15490319_SNP [dm6]	T	A	2.279e^-4	0.644	INTERGENIC
3L	14919578	3L_14919578_SNP [dm3] 3L_14926478_SNP [dm6]	A	G	2.282e^-4	0.644	UTR_5_PRIME DCX-EMAP INTRON DCX-EMAP
2L	19802446	2L_19802446_SNP [dm3] 2L_19802446_SNP [dm6]	A	G	2.285e^-4	0.644	INTRON sick
2R	11576437	2R_11576437_SNP [dm3] 2R_15688932_SNP [dm6]	T	C	2.292e^-4	0.644	NON_SYNONYMOUS_CODING Cep89 UPSTREAM CG30090	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	441402	3L_441402_SNP [dm3] 3L_441402_SNP [dm6]	C	G	2.295e^-4	0.644	UPSTREAM klar INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_Trl
2L	16135150	2L_16135150_SNP [dm3] 2L_16135150_SNP [dm6]	G	T	2.297e^-4	0.644	DOWNSTREAM CR44871 & 1 other INTRON CG34168
2L	698684	2L_698684_DEL [dm3] 2L_698684_DEL [dm6]	AA	A	2.306e^-4	0.644	INTRON ds
X	5661593	X_5661593_SNP [dm3] X_5767560_SNP [dm6]	C	T	2.307e^-4	0.644	SYNONYMOUS_CODING CG3097 INTRON CG42699	TF binding site mE1_TFBS_sens
3L	22100989	3L_22100989_DEL [dm3] 3L_22107889_DEL [dm6]	AC	A	2.310e^-4	0.644	INTERGENIC
3L	22100995	3L_22100995_DEL [dm3] 3L_22107895_DEL [dm6]	AAGGAGC	A	2.310e^-4	0.644	INTERGENIC
X	21947315	X_21947315_MNP [dm3] X_22545479_MNP [dm6]	TAA	AGG	2.312e^-4	0.644	INTERGENIC	transposable element FlyBase
3R	22784279	3R_22784279_SNP [dm3] 3R_26958557_SNP [dm6]	C	T	2.322e^-4	0.644	UPSTREAM CG6330 INTERGENIC
3R	24248795	3R_24248795_SNP [dm3] 3R_28423073_SNP [dm6]	A	G	2.325e^-4	0.644	INTRON beat-VI
3R	10436798	3R_10436798_SNP [dm3] 3R_14611076_SNP [dm6]	T	C	2.330e^-4	0.644	INTRON CG14853
3L	392011	3L_392011_SNP [dm3] 3L_392011_SNP [dm6]	A	T	2.333e^-4	0.644	INTRON trh EXON CR45378
3L	335436	3L_335436_SNP [dm3] 3L_335436_SNP [dm6]	A	G	2.334e^-4	0.644	SYNONYMOUS_CODING mthl10 INTRON Ptpmeg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6688269	2L_6688269_SNP [dm3] 2L_6688269_SNP [dm6]	A	G	2.346e^-4	0.644	SYNONYMOUS_CODING Tsp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4011471	3L_4011471_SNP [dm3] 3L_4011471_SNP [dm6]	A	C	2.347e^-4	0.644	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19960413	2L_19960413_SNP [dm3] 2L_19960413_SNP [dm6]	C	T	2.347e^-4	0.644	SYNONYMOUS_CODING CG34051 DOWNSTREAM CoIV & 1 other	TF binding site mE1_TFBS_sens
3L	22960103	3L_22960103_SNP [dm3] 3L_22967003_SNP [dm6]	G	A	2.347e^-4	0.644	INTERGENIC
2L	8216443	2L_8216443_SNP [dm3] 2L_8216443_SNP [dm6]	C	A	2.351e^-4	0.644	SYNONYMOUS_CODING CG8349 DOWNSTREAM CG8292
3L	22099935	3L_22099935_SNP [dm3] 3L_22106835_SNP [dm6]	G	A	2.357e^-4	0.644	INTERGENIC
2L	1859546	2L_1859546_SNP [dm3] 2L_1859546_SNP [dm6]	C	T	2.359e^-4	0.644	DOWNSTREAM wry INTRON CG31663
2R	17920188	2R_17920188_DEL [dm3] 2R_22032683_DEL [dm6]	GGGCTGG	G	2.359e^-4	0.644	INTRON CG34370
X	16099424	X_16099424_SNP [dm3] X_16205391_SNP [dm6]	C	A	2.367e^-4	0.644	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13023346	X_13023346_SNP [dm3] X_13129313_SNP [dm6]	T	C	2.373e^-4	0.644	NON_SYNONYMOUS_CODING CG15717 UTR_5_PRIME MFS10 UPSTREAM snmRNA:204 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	2389910	2L_2389910_SNP [dm3] 2L_2389910_SNP [dm6]	A	G	2.380e^-4	0.644	SYNONYMOUS_CODING CG43750
3L	13549577	3L_13549577_SNP [dm3] 3L_13556477_SNP [dm6]	G	A	2.383e^-4	0.644	INTRON bru-3
3L	11132647	3L_11132647_SNP [dm3] 3L_11139547_SNP [dm6]	T	C	2.384e^-4	0.644	INTRON CG32082
2R	6797948	2R_6797948_SNP [dm3] 2R_10910443_SNP [dm6]	G	T	2.387e^-4	0.644	NON_SYNONYMOUS_CODING Obp47a
2L	696649	2L_696649_SNP [dm3] 2L_696649_SNP [dm6]	T	A	2.393e^-4	0.644	INTRON ds	TF binding site mE1_TFBS_Trl
2L	16135118	2L_16135118_SNP [dm3] 2L_16135118_SNP [dm6]	G	A	2.395e^-4	0.644	DOWNSTREAM CR44871 & 1 other INTRON CG34168
3R	26097962	3R_26097962_SNP [dm3] 3R_30272240_SNP [dm6]	T	A	2.398e^-4	0.644	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1101004	3L_1101004_SNP [dm3] 3L_1101004_SNP [dm6]	C	T	2.399e^-4	0.644	UTR_5_PRIME bab1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2R	6879142	2R_6879142_SNP [dm3] 2R_10991637_SNP [dm6]	G	A	2.403e^-4	0.644	INTRON luna	TF binding site mE1_TFBS_chinmo
2R	2957893	2R_2957893_SNP [dm3] 2R_7070388_SNP [dm6]	A	C	2.403e^-4	0.644	UPSTREAM tRNA:CR30298 DOWNSTREAM CG12831 & 2 others INTERGENIC
2L	20987824	2L_20987824_SNP [dm3] 2L_20987824_SNP [dm6]	C	G	2.403e^-4	0.644	INTRON CG42238
3R	25672072	3R_25672072_SNP [dm3] 3R_29846350_SNP [dm6]	G	A	2.403e^-4	0.644	INTRON Cad99C
3L	16061143	3L_16061143_SNP [dm3] 3L_16068043_SNP [dm6]	T	C	2.409e^-4	0.644	INTRON Mbs	TF binding site mE1_TFBS_cad
3R	12611836	3R_12611836_SNP [dm3] 3R_16786114_SNP [dm6]	A	G	2.417e^-4	0.644	INTERGENIC
3R	26772845	3R_26772845_SNP [dm3] 3R_30947123_SNP [dm6]	A	G	2.433e^-4	0.644	INTERGENIC
3R	27189510	3R_27189510_SNP [dm3] 3R_31363788_SNP [dm6]	C	T	2.434e^-4	0.644	INTRON CG34347
3R	27189648	3R_27189648_SNP [dm3] 3R_31363926_SNP [dm6]	C	T	2.434e^-4	0.644	INTRON CG34347
3R	27189682	3R_27189682_SNP [dm3] 3R_31363960_SNP [dm6]	A	T	2.434e^-4	0.644	INTRON CG34347
2L	16135119	2L_16135119_SNP [dm3] 2L_16135119_SNP [dm6]	A	G	2.435e^-4	0.644	DOWNSTREAM CR44871 & 1 other INTRON CG34168
3R	13682590	3R_13682590_SNP [dm3] 3R_17856868_SNP [dm6]	C	G	2.437e^-4	0.644	INTRON tinc
2L	19825314	2L_19825314_SNP [dm3] 2L_19825314_SNP [dm6]	G	A	2.439e^-4	0.644	INTRON sick
2R	10348395	2R_10348395_SNP [dm3] 2R_14460890_SNP [dm6]	C	A	2.444e^-4	0.644	INTRON Oaz	TF binding site mE1_TFBS_cad
2L	19930941	2L_19930941_SNP [dm3] 2L_19930941_SNP [dm6]	G	A	2.444e^-4	0.644	INTRON sick
3L	11922753	3L_11922753_SNP [dm3] 3L_11929653_SNP [dm6]	C	T	2.445e^-4	0.644	INTRON CG44837 & 1 other
2R	7199869	2R_7199869_SNP [dm3] 2R_11312364_SNP [dm6]	C	T	2.448e^-4	0.644	SYNONYMOUS_CODING nompA	TF binding site mE1_TFBS_cad
2L	5903361	2L_5903361_SNP [dm3] 2L_5903361_SNP [dm6]	A	G	2.449e^-4	0.644	UTR_3_PRIME CG9021	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5856836	2L_5856836_SNP [dm3] 2L_5856836_SNP [dm6]	C	G	2.449e^-4	0.644	DOWNSTREAM TrissinR INTERGENIC
3R	25540223	3R_25540223_SNP [dm3] 3R_29714501_SNP [dm6]	C	T	2.457e^-4	0.645	UPSTREAM Obp99d & 1 other DOWNSTREAM Dup99B INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	14271088	2R_14271088_DEL [dm3] 2R_18383583_DEL [dm6]	TAT	T	2.464e^-4	0.646	UPSTREAM IM1 & 2 others INTERGENIC
3L	13549586	3L_13549586_SNP [dm3] 3L_13556486_SNP [dm6]	C	A	2.467e^-4	0.646	INTRON bru-3
3L	10627121	3L_10627121_SNP [dm3] 3L_10634021_SNP [dm6]	C	T	2.473e^-4	0.646	DOWNSTREAM E_z_ & 1 other INTRON CG34001
2R	14271151	2R_14271151_SNP [dm3] 2R_18383646_SNP [dm6]	C	T	2.485e^-4	0.648	UPSTREAM IM1 & 2 others INTERGENIC
2R	17022055	2R_17022055_SNP [dm3] 2R_21134550_SNP [dm6]	G	A	2.486e^-4	0.648	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4956302	2R_4956302_SNP [dm3] 2R_9068797_SNP [dm6]	C	T	2.495e^-4	0.65	UPSTREAM ana INTRON ana
X	3934017	X_3934017_SNP [dm3] X_4039984_SNP [dm6]	T	A	2.501e^-4	0.65	INTERGENIC
3L	2645866	3L_2645866_SNP [dm3] 3L_2645866_SNP [dm6]	A	G	2.504e^-4	0.65	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11804667	2R_11804667_SNP [dm3] 2R_15917162_SNP [dm6]	T	G	2.509e^-4	0.65	DOWNSTREAM CR44373 INTRON sli	TF binding site mE1_TFBS_cad
3L	22879088	3L_22879088_SNP [dm3] 3L_22885988_SNP [dm6]	T	C	2.515e^-4	0.65	INTRON slif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21945118	X_21945118_SNP [dm3] X_22543282_SNP [dm6]	G	T	2.515e^-4	0.65	SYNONYMOUS_CODING CG17599
3L	11841480	3L_11841480_SNP [dm3] 3L_11848380_SNP [dm6]	T	C	2.518e^-4	0.65	UPSTREAM CG12521 INTERGENIC
2R	9955247	2R_9955247_SNP [dm3] 2R_14067742_SNP [dm6]	T	A	2.525e^-4	0.651	INTRON Prosap
3R	4512365	3R_4512365_SNP [dm3] 3R_8686643_SNP [dm6]	G	A	2.538e^-4	0.653	UPSTREAM CR44937 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19501640	3R_19501640_SNP [dm3] 3R_23675918_SNP [dm6]	C	G	2.543e^-4	0.653	INTERGENIC
X	9849318	X_9849318_DEL [dm3] X_9955285_DEL [dm6]	TCGACT	T	2.544e^-4	0.653	INTERGENIC
3L	22919731	3L_22919731_SNP [dm3] 3L_22926631_SNP [dm6]	A	C	2.554e^-4	0.653	INTERGENIC
2L	20984347	2L_20984347_SNP [dm3] 2L_20984347_SNP [dm6]	T	C	2.555e^-4	0.653	INTRON CG42238
2L	845166	2L_845166_INS [dm3] 2L_845166_INS [dm6]	A	ATGTTAGTCATAA...	2.561e^-4	0.653	INTRON drongo	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9508876	3L_9508876_SNP [dm3] 3L_9515776_SNP [dm6]	G	T	2.561e^-4	0.653	INTRON CG33700
2R	17022059	2R_17022059_SNP [dm3] 2R_21134554_SNP [dm6]	C	G	2.567e^-4	0.653	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20215260	X_20215260_SNP [dm3] X_20344233_SNP [dm6]	A	C	2.571e^-4	0.653	INTERGENIC	transposable element FlyBase
2R	11327910	2R_11327910_SNP [dm3] 2R_15440405_SNP [dm6]	T	C	2.573e^-4	0.653	INTRON CG43729
X	8898203	X_8898203_SNP [dm3] X_9004170_SNP [dm6]	G	C	2.578e^-4	0.653	INTRON rdgA & 1 other
3R	19322132	3R_19322132_SNP [dm3] 3R_23496410_SNP [dm6]	A	C	2.579e^-4	0.653	INTERGENIC
3L	9716369	3L_9716369_SNP [dm3] 3L_9723269_SNP [dm6]	T	C	2.582e^-4	0.653	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4821762	3L_4821762_DEL [dm3] 3L_4821762_DEL [dm6]	ATTCTAGCACA...	A	2.590e^-4	0.653	INTRON Dhc64C
2R	11997548	2R_11997548_SNP [dm3] 2R_16110043_SNP [dm6]	T	C	2.591e^-4	0.653	UPSTREAM Asph & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	19923472	2L_19923472_SNP [dm3] 2L_19923472_SNP [dm6]	A	T	2.596e^-4	0.653	INTRON sick EXON CR43827
3R	27277992	3R_27277992_SNP [dm3] 3R_31452270_SNP [dm6]	G	C	2.597e^-4	0.653	INTRON Gprk2	TF binding site mE1_TFBS_cad
2L	6599888	2L_6599888_SNP [dm3] 2L_6599888_SNP [dm6]	A	C	2.604e^-4	0.653	INTRON CG11319
2L	6599970	2L_6599970_SNP [dm3] 2L_6599970_SNP [dm6]	C	T	2.604e^-4	0.653	INTRON CG11319
2L	6600191	2L_6600191_SNP [dm3] 2L_6600191_SNP [dm6]	T	A	2.604e^-4	0.653	INTRON CG11319
3L	22030324	3L_22030324_SNP [dm3] 3L_22037224_SNP [dm6]	T	C	2.621e^-4	0.656	INTRON Oct-TyrR
3L	4821645	3L_4821645_SNP [dm3] 3L_4821645_SNP [dm6]	C	G	2.625e^-4	0.656	INTRON Dhc64C
3L	4821647	3L_4821647_SNP [dm3] 3L_4821647_SNP [dm6]	A	G	2.625e^-4	0.656	INTRON Dhc64C
2L	19924960	2L_19924960_SNP [dm3] 2L_19924960_SNP [dm6]	A	G	2.628e^-4	0.656	INTRON sick
3L	2645600	3L_2645600_SNP [dm3] 3L_2645600_SNP [dm6]	A	T	2.640e^-4	0.657	INTRON CG1143	TF binding site mE1_TFBS_cad
3R	11246634	3R_11246634_SNP [dm3] 3R_15420912_SNP [dm6]	A	G	2.642e^-4	0.657	DOWNSTREAM CG6118 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
2L	5784488	2L_5784488_SNP [dm3] 2L_5784488_SNP [dm6]	A	G	2.642e^-4	0.657	SYNONYMOUS_CODING CG31913 INTRON CG9171	TF binding site mE1_TFBS_chinmo
3R	11511948	3R_11511948_SNP [dm3] 3R_15686226_SNP [dm6]	G	C	2.654e^-4	0.657	INTRON pxb
2L	19837577	2L_19837577_SNP [dm3] 2L_19837577_SNP [dm6]	G	A	2.656e^-4	0.657	INTRON sick	TF binding site mE1_TFBS_cad
3L	3872317	3L_3872317_DEL [dm3] 3L_3872317_DEL [dm6]	AACTACGAGTCTTTTTTCAG...	A	2.659e^-4	0.657	INTERGENIC
3L	19916695	3L_19916695_SNP [dm3] 3L_19923595_SNP [dm6]	G	A	2.661e^-4	0.657	UPSTREAM CG7770 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9853717	2L_9853717_SNP [dm3] 2L_9853717_SNP [dm6]	T	G	2.664e^-4	0.657	INTRON nAChRalpha6
2L	20961752	2L_20961752_SNP [dm3] 2L_20961752_SNP [dm6]	G	A	2.668e^-4	0.657	INTERGENIC
3L	10627130	3L_10627130_SNP [dm3] 3L_10634030_SNP [dm6]	G	A	2.668e^-4	0.657	DOWNSTREAM E_z_ & 1 other INTRON CG34001
3R	26486380	3R_26486380_SNP [dm3] 3R_30660658_SNP [dm6]	A	T	2.680e^-4	0.659	INTERGENIC
3L	6479135	3L_6479135_SNP [dm3] 3L_6486035_SNP [dm6]	A	G	2.685e^-4	0.659	DOWNSTREAM CG10147 & 1 other INTERGENIC
2L	19968199	2L_19968199_SNP [dm3] 2L_19968199_SNP [dm6]	A	G	2.689e^-4	0.659	UPSTREAM Hf DOWNSTREAM CG43861 INTERGENIC
3L	2646789	3L_2646789_SNP [dm3] 3L_2646789_SNP [dm6]	T	G	2.690e^-4	0.659	UTR_3_PRIME CG1143 DOWNSTREAM CG1143
3L	2937590	3L_2937590_SNP [dm3] 3L_2937590_SNP [dm6]	G	A	2.692e^-4	0.659	INTRON Shab
X	13135751	X_13135751_SNP [dm3] X_13241718_SNP [dm6]	C	T	2.694e^-4	0.659	INTRON mew
2L	19803822	2L_19803822_SNP [dm3] 2L_19803822_SNP [dm6]	G	A	2.704e^-4	0.659	INTRON sick
3R	26772549	3R_26772549_SNP [dm3] 3R_30946827_SNP [dm6]	A	C	2.705e^-4	0.659	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	3126389	2L_3126389_SNP [dm3] 2L_3126389_SNP [dm6]	C	T	2.708e^-4	0.659	NON_SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	14648425	2R_14648425_DEL [dm3] 2R_18760920_DEL [dm6]	TT	T	2.738e^-4	0.665	UTR_5_PRIME Jabba UPSTREAM Jabba & 1 other
2R	10345148	2R_10345148_SNP [dm3] 2R_14457643_SNP [dm6]	T	C	2.748e^-4	0.665	UPSTREAM Oaz INTRON Oaz	TF binding site mE1_TFBS_HSA
2L	14695099	2L_14695099_SNP [dm3] 2L_14695099_SNP [dm6]	A	C	2.748e^-4	0.665	INTERGENIC
X	5663983	X_5663983_SNP [dm3] X_5769950_SNP [dm6]	C	T	2.748e^-4	0.665	INTRON CG42699 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	12968016	3R_12968016_SNP [dm3] 3R_17142294_SNP [dm6]	G	A	2.751e^-4	0.665	INTRON TwdlW	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15863244	3R_15863244_SNP [dm3] 3R_20037522_SNP [dm6]	C	T	2.754e^-4	0.665	UTR_3_PRIME CG17193
3L	709523	3L_709523_SNP [dm3] 3L_709523_SNP [dm6]	T	A	2.764e^-4	0.666	INTRON CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3R	26293306	3R_26293306_SNP [dm3] 3R_30467584_SNP [dm6]	A	G	2.766e^-4	0.666	INTRON PH4alphaEFB	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Kr
3L	17623578	3L_17623578_SNP [dm3] 3L_17630478_SNP [dm6]	C	T	2.768e^-4	0.666	UTR_3_PRIME CG7510 UPSTREAM CR44566
3L	16921097	3L_16921097_SNP [dm3] 3L_16927997_SNP [dm6]	C	T	2.783e^-4	0.666	UPSTREAM CG13023 DOWNSTREAM CG11905 INTERGENIC
3L	711113	3L_711113_SNP [dm3] 3L_711113_SNP [dm6]	A	G	2.786e^-4	0.666	SYNONYMOUS_CODING CG13896 UPSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
2L	20987601	2L_20987601_SNP [dm3] 2L_20987601_SNP [dm6]	T	A	2.788e^-4	0.666	INTRON CG42238
2L	20987602	2L_20987602_SNP [dm3] 2L_20987602_SNP [dm6]	G	T	2.788e^-4	0.666	INTRON CG42238
2L	20974216	2L_20974216_SNP [dm3] 2L_20974216_SNP [dm6]	A	G	2.790e^-4	0.666	INTRON CG42238
2L	20300823	2L_20300823_SNP [dm3] 2L_20300823_SNP [dm6]	C	T	2.791e^-4	0.666	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13924066	3L_13924066_SNP [dm3] 3L_13930966_SNP [dm6]	G	A	2.794e^-4	0.666	NON_SYNONYMOUS_CODING Gl	TF binding site mE1_TFBS_cad
2L	18885261	2L_18885261_SNP [dm3] 2L_18885261_SNP [dm6]	C	G	2.794e^-4	0.666	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	11569043	2R_11569043_SNP [dm3] 2R_15681538_SNP [dm6]	A	G	2.802e^-4	0.666	NON_SYNONYMOUS_CODING CG30091	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7015107	3L_7015107_SNP [dm3] 3L_7022007_SNP [dm6]	C	G	2.803e^-4	0.666	INTRON Mp
2L	13325482	2L_13325482_SNP [dm3] 2L_13325482_SNP [dm6]	C	A	2.806e^-4	0.666	INTRON CG43778
2L	4824383	2L_4824383_SNP [dm3] 2L_4824383_SNP [dm6]	G	A	2.811e^-4	0.666	INTRON CG15628	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	1103387	3L_1103387_SNP [dm3] 3L_1103387_SNP [dm6]	C	T	2.822e^-4	0.666	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	9513593	3L_9513593_SNP [dm3] 3L_9520493_SNP [dm6]	G	T	2.823e^-4	0.666	INTRON CG33700
3R	25128569	3R_25128569_DEL [dm3] 3R_29302847_DEL [dm6]	GG	G	2.824e^-4	0.666	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25802117	3R_25802117_SNP [dm3] 3R_29976395_SNP [dm6]	C	T	2.828e^-4	0.666	INTERGENIC
2R	19388770	2R_19388770_SNP [dm3] 2R_23501247_SNP [dm6]	G	T	2.830e^-4	0.666	DOWNSTREAM CG13558 INTERGENIC
3R	18480610	3R_18480610_SNP [dm3] 3R_22654888_SNP [dm6]	T	C	2.840e^-4	0.666	INTRON CG45058
3R	19279690	3R_19279690_SNP [dm3] 3R_23453968_SNP [dm6]	C	T	2.841e^-4	0.666	INTRON CG4374
3R	13584293	3R_13584293_SNP [dm3] 3R_17758571_SNP [dm6]	T	A	2.843e^-4	0.666	INTRON TyrR
2L	9991560	2L_9991560_SNP [dm3] 2L_9991560_SNP [dm6]	C	T	2.848e^-4	0.666	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18813039	2L_18813039_SNP [dm3] 2L_18813039_SNP [dm6]	T	A	2.849e^-4	0.666	UTR_5_PRIME CG42305 & 1 other
3R	26485873	3R_26485873_SNP [dm3] 3R_30660151_SNP [dm6]	G	A	2.853e^-4	0.666	INTERGENIC
2L	19923406	2L_19923406_SNP [dm3] 2L_19923406_SNP [dm6]	G	A	2.859e^-4	0.666	INTRON sick EXON CR43827
2L	19925277	2L_19925277_SNP [dm3] 2L_19925277_SNP [dm6]	T	C	2.859e^-4	0.666	INTRON sick	TF binding site mE1_TFBS_chinmo
2R	11997601	2R_11997601_SNP [dm3] 2R_16110096_SNP [dm6]	G	A	2.861e^-4	0.666	UPSTREAM Asph & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	16135137	2L_16135137_SNP [dm3] 2L_16135137_SNP [dm6]	A	T	2.864e^-4	0.666	DOWNSTREAM CR44871 & 1 other INTRON CG34168
2L	5862425	2L_5862425_SNP [dm3] 2L_5862425_SNP [dm6]	G	A	2.875e^-4	0.666	INTRON rau
3R	19279698	3R_19279698_SNP [dm3] 3R_23453976_SNP [dm6]	A	C	2.875e^-4	0.666	INTRON CG4374
3R	3037245	3R_3037245_SNP [dm3] 3R_7211523_SNP [dm6]	A	T	2.876e^-4	0.666	INTERGENIC
3L	14910224	3L_14910224_SNP [dm3] 3L_14917124_SNP [dm6]	C	T	2.877e^-4	0.666	INTRON DCX-EMAP
3L	4647084	3L_4647084_INS [dm3] 3L_4647084_INS [dm6]	T	TC	2.887e^-4	0.666	INTRON axo
3R	21876370	3R_21876370_SNP [dm3] 3R_26050648_SNP [dm6]	T	G	2.891e^-4	0.666	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8647382	3L_8647382_SNP [dm3] 3L_8654282_SNP [dm6]	T	C	2.894e^-4	0.666	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	22052881	3L_22052881_SNP [dm3] 3L_22059781_SNP [dm6]	A	T	2.900e^-4	0.666	INTRON Oct-TyrR
2L	10560917	2L_10560917_SNP [dm3] 2L_10560917_SNP [dm6]	A	T	2.902e^-4	0.666	INTRON Trim9
3R	19099769	3R_19099769_SNP [dm3] 3R_23274047_SNP [dm6]	G	T	2.903e^-4	0.666	INTRON orb
2L	19904806	2L_19904806_SNP [dm3] 2L_19904806_SNP [dm6]	C	T	2.905e^-4	0.666	INTRON sick
3L	11598736	3L_11598736_SNP [dm3] 3L_11605636_SNP [dm6]	G	A	2.907e^-4	0.666	UTR_3_PRIME CG6091 DOWNSTREAM CG6091 & 1 other
3R	18610694	3R_18610694_SNP [dm3] 3R_22784972_SNP [dm6]	C	T	2.912e^-4	0.667	SYNONYMOUS_CODING CG7029 INTRON CG7029	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9853728	2L_9853728_SNP [dm3] 2L_9853728_SNP [dm6]	A	T	2.925e^-4	0.668	INTRON nAChRalpha6
2L	378373	2L_378373_SNP [dm3] 2L_378373_SNP [dm6]	A	T	2.926e^-4	0.668	UTR_5_PRIME al	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	4578862	2L_4578862_SNP [dm3] 2L_4578862_SNP [dm6]	G	A	2.928e^-4	0.668	UPSTREAM HP6 INTRON dp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7992010	2L_7992010_SNP [dm3] 2L_7992010_SNP [dm6]	A	G	2.939e^-4	0.669	UPSTREAM pes INTRON pes	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	25434109	3R_25434109_SNP [dm3] 3R_29608387_SNP [dm6]	G	A	2.945e^-4	0.669	UPSTREAM Diedel2 INTRON alph
X	21948477	X_21948477_INS [dm3] X_22546641_INS [dm6]	A	AATGTTGTAATAATGAAATA...	2.947e^-4	0.669	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_kn
3R	18562689	3R_18562689_SNP [dm3] 3R_22736967_SNP [dm6]	G	C	2.950e^-4	0.669	NON_SYNONYMOUS_CODING Dcr-1	TF binding site mE1_TFBS_cad
3R	25373224	3R_25373224_SNP [dm3] 3R_29547502_SNP [dm6]	T	C	2.955e^-4	0.669	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10689171	3L_10689171_SNP [dm3] 3L_10696071_SNP [dm6]	T	A	2.957e^-4	0.669	INTRON NijA
3L	705496	3L_705496_SNP [dm3] 3L_705496_SNP [dm6]	C	G	2.965e^-4	0.67	DOWNSTREAM CG13895 EXON CR44514
3L	18244223	3L_18244223_SNP [dm3] 3L_18251123_SNP [dm6]	C	A	2.968e^-4	0.67	UPSTREAM CheA75a INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	18463732	X_18463732_SNP [dm3] X_18569699_SNP [dm6]	A	G	2.970e^-4	0.67	INTRON Bx	TF binding site BDTNP1_TFBS_da
2L	16758939	2L_16758939_SNP [dm3] 2L_16758939_SNP [dm6]	T	A	2.977e^-4	0.67	DOWNSTREAM yellow-b INTRON ppk17
3R	4340520	3R_4340520_SNP [dm3] 3R_8514798_SNP [dm6]	T	A	2.981e^-4	0.67	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	3245291	2L_3245291_SNP [dm3] 2L_3245291_SNP [dm6]	T	A	2.983e^-4	0.67	INTERGENIC
3L	7479886	3L_7479886_SNP [dm3] 3L_7486786_SNP [dm6]	C	T	2.983e^-4	0.67	INTRON mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9352113	3L_9352113_SNP [dm3] 3L_9359013_SNP [dm6]	A	G	2.987e^-4	0.67	UTR_5_PRIME CG32039 UPSTREAM UGP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	20260013	2L_20260013_DEL [dm3] 2L_20260013_DEL [dm6]	CC	C	2.998e^-4	0.671	INTERGENIC
2L	8957211	2L_8957211_SNP [dm3] 2L_8957211_SNP [dm6]	A	T	3.008e^-4	0.673	INTRON CG31886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16824644	3L_16824644_SNP [dm3] 3L_16831544_SNP [dm6]	A	G	3.019e^-4	0.674	INTERGENIC	TF binding site mE1_TFBS_inv
2L	9052774	2L_9052774_SNP [dm3] 2L_9052774_SNP [dm6]	G	T	3.022e^-4	0.674	UTR_3_PRIME CG31708
3R	16986404	3R_16986404_SNP [dm3] 3R_21160682_SNP [dm6]	C	T	3.028e^-4	0.675	NON_SYNONYMOUS_CODING CG10824 INTRON SNF4Agamma	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9326901	3R_9326901_SNP [dm3] 3R_13501179_SNP [dm6]	C	A	3.034e^-4	0.675	INTERGENIC
3R	18614646	3R_18614646_SNP [dm3] 3R_22788924_SNP [dm6]	A	C	3.040e^-4	0.676	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5462305	X_5462305_INS [dm3] X_5568272_INS [dm6]	A	ACACA	3.048e^-4	0.677	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	18224679	2R_18224679_SNP [dm3] 2R_22337174_SNP [dm6]	G	T	3.063e^-4	0.678	DOWNSTREAM Liprin-gamma INTRON Liprin-gamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	6600103	2L_6600103_SNP [dm3] 2L_6600103_SNP [dm6]	C	T	3.068e^-4	0.678	INTRON CG11319
X	5228054	X_5228054_SNP [dm3] X_5334021_SNP [dm6]	A	C	3.072e^-4	0.678	UTR_3_PRIME CanB
2L	7935535	2L_7935535_SNP [dm3] 2L_7935535_SNP [dm6]	A	G	3.073e^-4	0.678	INTRON Snoo
2L	1988005	2L_1988005_SNP [dm3] 2L_1988005_SNP [dm6]	C	A	3.075e^-4	0.678	UPSTREAM Npc2a & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8133682	2R_8133682_SNP [dm3] 2R_12246177_SNP [dm6]	T	A	3.084e^-4	0.678	DOWNSTREAM CR44315 INTERGENIC
3R	25432018	3R_25432018_SNP [dm3] 3R_29606296_SNP [dm6]	G	A	3.085e^-4	0.678	INTRON alph
3R	13926748	3R_13926748_SNP [dm3] 3R_18101026_SNP [dm6]	G	T	3.088e^-4	0.678	INTRON sr
2R	18369132	2R_18369132_SNP [dm3] 2R_22481627_SNP [dm6]	C	T	3.090e^-4	0.678	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12180728	2R_12180728_SNP [dm3] 2R_16293223_SNP [dm6]	C	T	3.091e^-4	0.678	SYNONYMOUS_CODING CG7747 DOWNSTREAM CG30100 & 1 other	TF binding site mE1_TFBS_sens
2R	11724908	2R_11724908_SNP [dm3] 2R_15837403_SNP [dm6]	C	T	3.103e^-4	0.68	INTRON tun	regulatory region REDfly_CRMs
X	17952263	X_17952263_SNP [dm3] X_18058230_SNP [dm6]	A	G	3.110e^-4	0.68	INTRON Sh
3L	1420838	3L_1420838_SNP [dm3] 3L_1420838_SNP [dm6]	G	T	3.114e^-4	0.68	DOWNSTREAM CG9173 INTRON Ptp61F
2L	6463898	2L_6463898_SNP [dm3] 2L_6463898_SNP [dm6]	A	T	3.118e^-4	0.68	UTR_5_PRIME CG16947	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	838954	2L_838954_SNP [dm3] 2L_838954_SNP [dm6]	T	G	3.129e^-4	0.68	INTRON drongo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25978142	3R_25978142_SNP [dm3] 3R_30152420_SNP [dm6]	T	C	3.131e^-4	0.68	DOWNSTREAM CG11498 INTRON CG15529	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3665694	2R_3665694_SNP [dm3] 2R_7778189_SNP [dm6]	A	G	3.139e^-4	0.68	INTRON CG30497 & 1 other
3L	14489373	3L_14489373_SNP [dm3] 3L_14496273_SNP [dm6]	C	T	3.139e^-4	0.68	INTRON bbg	TF binding site mE1_TFBS_cad
3R	18478815	3R_18478815_SNP [dm3] 3R_22653093_SNP [dm6]	T	C	3.140e^-4	0.68	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17920187	2R_17920187_SNP [dm3] 2R_22032682_SNP [dm6]	G	T	3.144e^-4	0.68	INTRON CG34370
3L	4741046	3L_4741046_SNP [dm3] 3L_4741046_SNP [dm6]	G	A	3.147e^-4	0.68	INTRON RhoGEF64C
2R	12643976	2R_12643976_SNP [dm3] 2R_16756471_SNP [dm6]	A	T	3.147e^-4	0.68	DOWNSTREAM CG5267 INTRON unc-104	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5694802	3L_5694802_SNP [dm3] 3L_5701702_SNP [dm6]	T	G	3.148e^-4	0.68	INTRON sif
3L	11841372	3L_11841372_SNP [dm3] 3L_11848272_SNP [dm6]	T	G	3.150e^-4	0.68	UPSTREAM CG12521 INTERGENIC
2L	8763784	2L_8763784_SNP [dm3] 2L_8763784_SNP [dm6]	T	G	3.152e^-4	0.68	INTERGENIC
2L	8507679	2L_8507679_SNP [dm3] 2L_8507679_SNP [dm6]	T	A	3.154e^-4	0.68	UPSTREAM Dh31 INTERGENIC
3R	20432926	3R_20432926_SNP [dm3] 3R_24607204_SNP [dm6]	G	T	3.160e^-4	0.68	INTRON mld
2R	15944123	2R_15944123_SNP [dm3] 2R_20056618_SNP [dm6]	C	A	3.165e^-4	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3035763	X_3035763_DEL [dm3] X_3141730_DEL [dm6]	GG	G	3.166e^-4	0.68	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	3902806	3R_3902806_SNP [dm3] 3R_8077084_SNP [dm6]	C	T	3.174e^-4	0.68	INTRON mAChR-B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	13413317	X_13413317_SNP [dm3] X_13519284_SNP [dm6]	T	C	3.174e^-4	0.68	UTR_3_PRIME Neto INTRON Neto
3R	21391526	3R_21391526_SNP [dm3] 3R_25565804_SNP [dm6]	G	A	3.185e^-4	0.68	INTRON msi
2L	3380210	2L_3380210_SNP [dm3] 2L_3380210_SNP [dm6]	C	G	3.196e^-4	0.68	INTERGENIC
X	13619019	X_13619019_SNP [dm3] X_13724986_SNP [dm6]	A	G	3.200e^-4	0.68	NON_SYNONYMOUS_CODING mus101	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	25546195	3R_25546195_SNP [dm3] 3R_29720473_SNP [dm6]	A	G	3.202e^-4	0.68	INTRON CG15506
X	20215420	X_20215420_SNP [dm3] X_20344393_SNP [dm6]	A	G	3.215e^-4	0.68	INTERGENIC
2R	10345181	2R_10345181_INS [dm3] 2R_14457676_INS [dm6]	A	ATTTA	3.216e^-4	0.68	UPSTREAM Oaz INTRON Oaz	TF binding site mE1_TFBS_HSA
3L	2596450	3L_2596450_SNP [dm3] 3L_2596450_SNP [dm6]	G	A	3.220e^-4	0.68	SYNONYMOUS_CODING CG16984 UTR_3_PRIME CG12182 DOWNSTREAM dos & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7991476	3L_7991476_SNP [dm3] 3L_7998376_SNP [dm6]	C	T	3.231e^-4	0.68	INTRON nmo	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	13310271	3L_13310271_SNP [dm3] 3L_13317171_SNP [dm6]	C	T	3.237e^-4	0.68	INTERGENIC
3L	11685666	3L_11685666_SNP [dm3] 3L_11692566_SNP [dm6]	A	G	3.239e^-4	0.68	SPLICE_SITE_REGION CG14135 SYNONYMOUS_CODING CG14135 UPSTREAM CR43887	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19476274	3L_19476274_SNP [dm3] 3L_19483174_SNP [dm6]	C	T	3.242e^-4	0.68	DOWNSTREAM brv1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
X	9423724	X_9423724_SNP [dm3] X_9529691_SNP [dm6]	C	A	3.246e^-4	0.68	INTRON CG32700
3L	22047427	3L_22047427_SNP [dm3] 3L_22054327_SNP [dm6]	G	T	3.247e^-4	0.68	INTRON Oct-TyrR	TF binding site mE1_TFBS_HSA
X	17952247	X_17952247_SNP [dm3] X_18058214_SNP [dm6]	A	C	3.248e^-4	0.68	INTRON Sh
X	17952258	X_17952258_SNP [dm3] X_18058225_SNP [dm6]	C	A	3.248e^-4	0.68	INTRON Sh
X	16690403	X_16690403_SNP [dm3] X_16796370_SNP [dm6]	T	A	3.249e^-4	0.68	UTR_3_PRIME CG4768 DOWNSTREAM CG9132 & 1 other
2L	19841181	2L_19841181_SNP [dm3] 2L_19841181_SNP [dm6]	G	C	3.262e^-4	0.68	INTRON sick
3R	4777980	3R_4777980_SNP [dm3] 3R_8952258_SNP [dm6]	C	T	3.263e^-4	0.68	SYNONYMOUS_CODING CG11966	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18879941	2L_18879941_SNP [dm3] 2L_18879941_SNP [dm6]	A	T	3.267e^-4	0.68	INTRON tup
2L	6129858	2L_6129858_SNP [dm3] 2L_6129858_SNP [dm6]	G	C	3.271e^-4	0.68	SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17089048	3L_17089048_SNP [dm3] 3L_17095948_SNP [dm6]	T	A	3.271e^-4	0.68	INTRON Rbp6
2L	8954661	2L_8954661_SNP [dm3] 2L_8954661_SNP [dm6]	G	A	3.276e^-4	0.68	SYNONYMOUS_CODING CG31886	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	22858373	3R_22858373_SNP [dm3] 3R_27032651_SNP [dm6]	T	G	3.280e^-4	0.68	INTRON RYa-R	TF binding site mE1_TFBS_HSA
X	3898691	X_3898691_SNP [dm3] X_4004658_SNP [dm6]	C	T	3.282e^-4	0.68	INTERGENIC
3L	7826708	3L_7826708_SNP [dm3] 3L_7833608_SNP [dm6]	A	T	3.283e^-4	0.68	UPSTREAM Pdp1 INTRON Pdp1
2L	5777545	2L_5777545_SNP [dm3] 2L_5777545_SNP [dm6]	C	T	3.291e^-4	0.68	INTRON CG9171	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	18819064	2R_18819064_SNP [dm3] 2R_22931541_SNP [dm6]	C	T	3.292e^-4	0.68	SYNONYMOUS_CODING CG42678 UTR_3_PRIME CG42678 DOWNSTREAM CG3788
X	9849341	X_9849341_SNP [dm3] X_9955308_SNP [dm6]	C	T	3.296e^-4	0.68	INTERGENIC
2L	19875749	2L_19875749_SNP [dm3] 2L_19875749_SNP [dm6]	A	T	3.301e^-4	0.68	INTRON sick
X	7064106	X_7064106_SNP [dm3] X_7170073_SNP [dm6]	A	T	3.306e^-4	0.68	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2R	11570774	2R_11570774_SNP [dm3] 2R_15683269_SNP [dm6]	G	T	3.310e^-4	0.68	SYNONYMOUS_CODING Ranbp11 DOWNSTREAM CG30091 EXON CR43429	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	1705003	3L_1705003_SNP [dm3] 3L_1705003_SNP [dm6]	C	T	3.313e^-4	0.68	INTRON CG7991
2L	5883901	2L_5883901_SNP [dm3] 2L_5883901_SNP [dm6]	T	C	3.316e^-4	0.68	SYNONYMOUS_CODING CG44574 UPSTREAM CG43185 DOWNSTREAM Sfp26Ac
2R	10346210	2R_10346210_SNP [dm3] 2R_14458705_SNP [dm6]	G	T	3.316e^-4	0.68	UTR_5_PRIME Oaz INTRON Oaz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	18284264	2R_18284264_SNP [dm3] 2R_22396759_SNP [dm6]	A	G	3.326e^-4	0.68	INTRON babos	TF binding site BDTNP1_TFBS_dl
3L	21483553	3L_21483553_SNP [dm3] 3L_21490453_SNP [dm6]	C	T	3.327e^-4	0.68	DOWNSTREAM CG7202 INTRON Neu2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20215452	X_20215452_INS [dm3] X_20344425_INS [dm6]	AC	TTATGCCG	3.331e^-4	0.68	INTERGENIC
2L	19840678	2L_19840678_SNP [dm3] 2L_19840678_SNP [dm6]	A	G	3.334e^-4	0.68	INTRON sick
3L	711025	3L_711025_SNP [dm3] 3L_711025_SNP [dm6]	T	G	3.344e^-4	0.68	SYNONYMOUS_CODING CG13896 UPSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
X	17624314	X_17624314_SNP [dm3] X_17730281_SNP [dm6]	G	A	3.353e^-4	0.68	INTRON CG42684
3L	7013420	3L_7013420_SNP [dm3] 3L_7020320_SNP [dm6]	C	T	3.356e^-4	0.68	INTRON Mp
2L	8507658	2L_8507658_SNP [dm3] 2L_8507658_SNP [dm6]	G	C	3.358e^-4	0.68	UPSTREAM Dh31 INTERGENIC
3L	837662	3L_837662_SNP [dm3] 3L_837662_SNP [dm6]	A	C	3.365e^-4	0.68	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	9257384	2L_9257384_SNP [dm3] 2L_9257384_SNP [dm6]	C	A	3.373e^-4	0.68	INTRON Ggamma30A	TF binding site BDTNP1_TFBS_z
2L	19803156	2L_19803156_SNP [dm3] 2L_19803156_SNP [dm6]	T	G	3.377e^-4	0.68	INTRON sick
3L	1420198	3L_1420198_SNP [dm3] 3L_1420198_SNP [dm6]	G	C	3.379e^-4	0.68	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
3L	14385307	3L_14385307_SNP [dm3] 3L_14392207_SNP [dm6]	A	G	3.381e^-4	0.68	INTERGENIC
2R	10098100	2R_10098100_INS [dm3] 2R_14210595_INS [dm6]	TG	GAC	3.390e^-4	0.68	INTRON Sox15	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	18697864	3R_18697864_DEL [dm3] 3R_22872142_DEL [dm6]	CA	C	3.390e^-4	0.68	INTERGENIC
3L	14385481	3L_14385481_SNP [dm3] 3L_14392381_SNP [dm6]	T	C	3.395e^-4	0.68	INTERGENIC
3R	26120288	3R_26120288_SNP [dm3] 3R_30294566_SNP [dm6]	C	G	3.400e^-4	0.68	INTRON hdc
2R	14585253	2R_14585253_SNP [dm3] 2R_18697748_SNP [dm6]	G	C	3.405e^-4	0.68	DOWNSTREAM CG15071 INTRON Sik3
2R	10345150	2R_10345150_SNP [dm3] 2R_14457645_SNP [dm6]	T	A	3.406e^-4	0.68	UPSTREAM Oaz INTRON Oaz	TF binding site mE1_TFBS_HSA
X	14778005	X_14778005_SNP [dm3] X_14883972_SNP [dm6]	A	G	3.407e^-4	0.68	INTRON Flo2
3R	19254911	3R_19254911_SNP [dm3] 3R_23429189_SNP [dm6]	C	T	3.408e^-4	0.68	INTRON CG4374	TF binding site BDTNP1_TFBS_prd
2L	21802262	2L_21802262_SNP [dm3] 2L_21802262_SNP [dm6]	A	G	3.409e^-4	0.68	INTERGENIC
3R	18697862	3R_18697862_SNP [dm3] 3R_22872140_SNP [dm6]	T	C	3.410e^-4	0.68	INTERGENIC
2L	17304998	2L_17304998_SNP [dm3] 2L_17304998_SNP [dm6]	G	A	3.410e^-4	0.68	INTERGENIC
2R	12180722	2R_12180722_SNP [dm3] 2R_16293217_SNP [dm6]	G	T	3.414e^-4	0.68	SYNONYMOUS_CODING CG7747 DOWNSTREAM CG30100 & 1 other	TF binding site mE1_TFBS_sens
2L	912300	2L_912300_SNP [dm3] 2L_912300_SNP [dm6]	C	T	3.416e^-4	0.68	DOWNSTREAM CR44061 INTERGENIC
3L	710315	3L_710315_SNP [dm3] 3L_710315_SNP [dm6]	G	A	3.417e^-4	0.68	NON_SYNONYMOUS_CODING CkIIalpha-i3 UTR_5_PRIME CkIIalpha-i3 DOWNSTREAM CG13896	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	15930403	3R_15930403_INS [dm3] 3R_20104681_INS [dm6]	C	CCATTAAGTTGACGCTTTTC...	3.418e^-4	0.68	INTERGENIC
3R	965185	3R_965185_SNP [dm3] 3R_5139463_SNP [dm6]	G	T	3.419e^-4	0.68	UPSTREAM CG12589 INTERGENIC
2R	4950454	2R_4950454_SNP [dm3] 2R_9062949_SNP [dm6]	G	A	3.422e^-4	0.68	INTRON ana	regulatory region REDfly_CRMs
2L	4622633	2L_4622633_SNP [dm3] 2L_4622633_SNP [dm6]	A	T	3.427e^-4	0.68	INTERGENIC
2L	19824797	2L_19824797_SNP [dm3] 2L_19824797_SNP [dm6]	C	T	3.431e^-4	0.68	INTRON sick
2L	8957202	2L_8957202_SNP [dm3] 2L_8957202_SNP [dm6]	A	T	3.432e^-4	0.68	INTRON CG31886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5390657	3L_5390657_SNP [dm3] 3L_5397557_SNP [dm6]	T	G	3.442e^-4	0.68	INTERGENIC
2L	9105472	2L_9105472_SNP [dm3] 2L_9105472_SNP [dm6]	A	T	3.453e^-4	0.68	INTERGENIC
3L	5162255	3L_5162255_SNP [dm3] 3L_5169155_SNP [dm6]	G	C	3.455e^-4	0.68	INTRON shep	TF binding site mE1_TFBS_Kr
3R	21824582	3R_21824582_SNP [dm3] 3R_25998860_SNP [dm6]	T	C	3.457e^-4	0.68	UPSTREAM E_spl_mgamma-HLH DOWNSTREAM E_spl_mdelta-HLH INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3R	15682846	3R_15682846_SNP [dm3] 3R_19857124_SNP [dm6]	G	C	3.458e^-4	0.68	NON_SYNONYMOUS_CODING Ire1	TF binding site mE1_TFBS_cad
3R	14293780	3R_14293780_DEL [dm3] 3R_18468058_DEL [dm6]	TTTT	T	3.467e^-4	0.68	INTRON fru
3R	25588806	3R_25588806_SNP [dm3] 3R_29763084_SNP [dm6]	A	G	3.471e^-4	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19804784	2L_19804784_SNP [dm3] 2L_19804784_SNP [dm6]	A	C	3.473e^-4	0.68	INTRON sick
3L	3872457	3L_3872457_SNP [dm3] 3L_3872457_SNP [dm6]	A	G	3.477e^-4	0.68	INTERGENIC	TF binding site mE1_TFBS_cad
2R	18838480	2R_18838480_SNP [dm3] 2R_22950957_SNP [dm6]	A	G	3.488e^-4	0.68	DOWNSTREAM CR32835 INTERGENIC
3L	9298626	3L_9298626_SNP [dm3] 3L_9305526_SNP [dm6]	G	T	3.503e^-4	0.68	INTERGENIC
3R	3045300	3R_3045300_SNP [dm3] 3R_7219578_SNP [dm6]	G	A	3.508e^-4	0.68	START_GAINED CG14605 UTR_5_PRIME CG14605
2R	7107070	2R_7107070_SNP [dm3] 2R_11219565_SNP [dm6]	T	C	3.510e^-4	0.68	UTR_5_PRIME Syx6 UPSTREAM Syx6 & 1 other INTRON CG9084	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	25727862	3R_25727862_SNP [dm3] 3R_29902140_SNP [dm6]	G	T	3.516e^-4	0.68	INTRON CG31038
3R	21321674	3R_21321674_SNP [dm3] 3R_25495952_SNP [dm6]	G	A	3.518e^-4	0.68	UPSTREAM CG33494 DOWNSTREAM CR44948 INTERGENIC
3R	3277143	3R_3277143_SNP [dm3] 3R_7451421_SNP [dm6]	C	T	3.518e^-4	0.68	UPSTREAM mir-4950 & 1 other DOWNSTREAM tRNA:V3b:84Db INTERGENIC
3R	10304959	3R_10304959_SNP [dm3] 3R_14479237_SNP [dm6]	G	A	3.521e^-4	0.68	INTRON cv-c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3R	16987115	3R_16987115_SNP [dm3] 3R_21161393_SNP [dm6]	A	T	3.521e^-4	0.68	UPSTREAM CG10824 INTRON SNF4Agamma
3R	21891631	3R_21891631_SNP [dm3] 3R_26065909_SNP [dm6]	T	A	3.529e^-4	0.68	INTERGENIC
3R	18614739	3R_18614739_SNP [dm3] 3R_22789017_SNP [dm6]	T	C	3.532e^-4	0.68	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5560191	2L_5560191_SNP [dm3] 2L_5560191_SNP [dm6]	C	A	3.536e^-4	0.68	INTRON GluRIIB
3R	18614737	3R_18614737_SNP [dm3] 3R_22789015_SNP [dm6]	C	T	3.536e^-4	0.68	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4198618	X_4198618_SNP [dm3] X_4304585_SNP [dm6]	G	A	3.538e^-4	0.68	INTERGENIC
3L	1727047	3L_1727047_SNP [dm3] 3L_1727047_SNP [dm6]	G	A	3.538e^-4	0.68	INTRON drpr
2L	588349	2L_588349_SNP [dm3] 2L_588349_SNP [dm6]	T	C	3.544e^-4	0.68	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6706329	2L_6706329_SNP [dm3] 2L_6706329_SNP [dm6]	T	C	3.563e^-4	0.68	INTRON Tsp
X	7622623	X_7622623_SNP [dm3] X_7728590_SNP [dm6]	G	A	3.570e^-4	0.68	UPSTREAM CG12155 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	16209784	3L_16209784_SNP [dm3] 3L_16216684_SNP [dm6]	C	T	3.570e^-4	0.68	INTRON CG13073
2L	10560968	2L_10560968_SNP [dm3] 2L_10560968_SNP [dm6]	T	A	3.572e^-4	0.68	INTRON Trim9
2R	15895215	2R_15895215_SNP [dm3] 2R_20007710_SNP [dm6]	T	C	3.573e^-4	0.68	DOWNSTREAM CR44628 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	6838998	3L_6838998_SNP [dm3] 3L_6845898_SNP [dm6]	G	A	3.576e^-4	0.68	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	4152861	3L_4152861_SNP [dm3] 3L_4152861_SNP [dm6]	G	A	3.578e^-4	0.68	DOWNSTREAM CG1299 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21471323	3L_21471323_DEL [dm3] 3L_21478223_DEL [dm6]	TTGCATCACTT...	T	3.580e^-4	0.68	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15641202	3L_15641202_INS [dm3] 3L_15648102_INS [dm6]	T	TT	3.581e^-4	0.68	UPSTREAM CG43083 & 1 other INTERGENIC
X	6643082	X_6643082_INS [dm3] X_6749049_INS [dm6]	A	AACAGAGA	3.587e^-4	0.68	INTRON CG14439
3R	20321310	3R_20321310_SNP [dm3] 3R_24495588_SNP [dm6]	C	T	3.588e^-4	0.68	INTERGENIC	TF binding site mE1_TFBS_cad
2R	12419989	2R_12419989_SNP [dm3] 2R_16532484_SNP [dm6]	C	G	3.589e^-4	0.68	UTR_3_PRIME Sema-2a
3L	3872417	3L_3872417_SNP [dm3] 3L_3872417_SNP [dm6]	A	T	3.594e^-4	0.68	INTERGENIC
3L	332510	3L_332510_SNP [dm3] 3L_332510_SNP [dm6]	A	T	3.598e^-4	0.68	UPSTREAM mthl9 DOWNSTREAM mthl10 INTRON Ptpmeg	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	18626744	3L_18626744_SNP [dm3] 3L_18633644_SNP [dm6]	G	T	3.599e^-4	0.68	INTRON MYPT-75D
2R	4953988	2R_4953988_SNP [dm3] 2R_9066483_SNP [dm6]	T	C	3.602e^-4	0.68	INTRON ana	regulatory region REDfly_CRMs
3R	9345789	3R_9345789_SNP [dm3] 3R_13520067_SNP [dm6]	G	A	3.603e^-4	0.68	INTERGENIC
3R	24831732	3R_24831732_SNP [dm3] 3R_29006010_SNP [dm6]	G	C	3.609e^-4	0.68	INTRON wat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24413609	3R_24413609_SNP [dm3] 3R_28587887_SNP [dm6]	C	T	3.611e^-4	0.68	EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	21946848	X_21946848_SNP [dm3] X_22545012_SNP [dm6]	G	A	3.615e^-4	0.68	UPSTREAM CG17599 INTERGENIC
2L	19925142	2L_19925142_SNP [dm3] 2L_19925142_SNP [dm6]	C	A	3.617e^-4	0.68	INTRON sick
3L	23399548	3L_23399548_SNP [dm3] 3L_23406448_SNP [dm6]	G	C	3.618e^-4	0.68	INTERGENIC	transposable element FlyBase
3L	22028560	3L_22028560_SNP [dm3] 3L_22035460_SNP [dm6]	C	A	3.619e^-4	0.68	UTR_5_PRIME Oct-TyrR
3L	22037769	3L_22037769_SNP [dm3] 3L_22044669_SNP [dm6]	A	G	3.619e^-4	0.68	INTRON Oct-TyrR
3L	22037770	3L_22037770_SNP [dm3] 3L_22044670_SNP [dm6]	G	A	3.619e^-4	0.68	INTRON Oct-TyrR
3L	22048386	3L_22048386_SNP [dm3] 3L_22055286_SNP [dm6]	C	A	3.619e^-4	0.68	INTRON Oct-TyrR	TF binding site BDTNP1_TFBS_da
3L	22049031	3L_22049031_SNP [dm3] 3L_22055931_SNP [dm6]	T	A	3.619e^-4	0.68	INTRON Oct-TyrR
3L	22052404	3L_22052404_SNP [dm3] 3L_22059304_SNP [dm6]	G	T	3.619e^-4	0.68	INTRON Oct-TyrR
3L	22053256	3L_22053256_SNP [dm3] 3L_22060156_SNP [dm6]	C	T	3.619e^-4	0.68	INTRON Oct-TyrR
3L	22054406	3L_22054406_SNP [dm3] 3L_22061306_SNP [dm6]	G	A	3.619e^-4	0.68	NON_SYNONYMOUS_CODING Oct-TyrR
3L	14385314	3L_14385314_DEL [dm3] 3L_14392214_DEL [dm6]	ATAAAAA	A	3.625e^-4	0.68	INTERGENIC
2R	17697041	2R_17697041_SNP [dm3] 2R_21809536_SNP [dm6]	G	T	3.631e^-4	0.68	INTERGENIC
3L	5011769	3L_5011769_SNP [dm3] 3L_5011769_SNP [dm6]	A	T	3.640e^-4	0.68	INTRON Con & 1 other

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.104e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2280 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	16202369	3L_16202369_SNP [dm3] 3L_16209269_SNP [dm6]	G	A	3.203e^-8	0.02	INTERGENIC	TF binding site mE1_TFBS_cad
3L	16202334	3L_16202334_SNP [dm3] 3L_16209234_SNP [dm6]	A	T	3.378e^-8	0.02	INTERGENIC	TF binding site mE1_TFBS_cad
2R	16289150	2R_16289150_SNP [dm3] 2R_20401645_SNP [dm6]	G	A	3.737e^-8	0.02	INTERGENIC
3L	16202321	3L_16202321_SNP [dm3] 3L_16209221_SNP [dm6]	G	T	4.263e^-8	0.02	INTERGENIC	TF binding site mE1_TFBS_cad
3L	711857	3L_711857_SNP [dm3] 3L_711857_SNP [dm6]	A	C	9.409e^-8	0.035	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	712348	3L_712348_SNP [dm3] 3L_712348_SNP [dm6]	G	T	1.519e^-7	0.047	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712399	3L_712399_SNP [dm3] 3L_712399_SNP [dm6]	A	T	1.826e^-7	0.049	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712385	3L_712385_DEL [dm3] 3L_712385_DEL [dm6]	TA	T	2.724e^-7	0.06	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712388	3L_712388_DEL [dm3] 3L_712388_DEL [dm6]	AAT	A	3.022e^-7	0.06	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	711790	3L_711790_SNP [dm3] 3L_711790_SNP [dm6]	A	T	3.234e^-7	0.06	UTR_5_PRIME CG13896	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	712376	3L_712376_SNP [dm3] 3L_712376_SNP [dm6]	G	A	3.539e^-7	0.06	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712423	3L_712423_SNP [dm3] 3L_712423_SNP [dm6]	G	C	4.416e^-7	0.069	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712377	3L_712377_SNP [dm3] 3L_712377_SNP [dm6]	A	C	5.264e^-7	0.076	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712384	3L_712384_SNP [dm3] 3L_712384_SNP [dm6]	T	C	6.285e^-7	0.084	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712235	3L_712235_SNP [dm3] 3L_712235_SNP [dm6]	C	T	7.276e^-7	0.091	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	712337	3L_712337_SNP [dm3] 3L_712337_SNP [dm6]	G	T	1.061e^-6	0.124	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	16202346	3L_16202346_SNP [dm3] 3L_16209246_SNP [dm6]	C	T	1.290e^-6	0.142	INTERGENIC	TF binding site mE1_TFBS_cad
3L	712374	3L_712374_SNP [dm3] 3L_712374_SNP [dm6]	G	C	1.552e^-6	0.162	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712343	3L_712343_SNP [dm3] 3L_712343_SNP [dm6]	A	C	1.716e^-6	0.169	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712226	3L_712226_SNP [dm3] 3L_712226_SNP [dm6]	C	A	1.854e^-6	0.174	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	712335	3L_712335_SNP [dm3] 3L_712335_SNP [dm6]	T	A	1.985e^-6	0.177	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712319	3L_712319_INS [dm3] 3L_712319_INS [dm6]	C	CA	2.189e^-6	0.178	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712342	3L_712342_SNP [dm3] 3L_712342_SNP [dm6]	A	T	2.189e^-6	0.178	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	16289158	2R_16289158_DEL [dm3] 2R_20401653_DEL [dm6]	CCG	C	2.698e^-6	0.209	INTERGENIC
3L	10969436	3L_10969436_SNP [dm3] 3L_10976336_SNP [dm6]	A	T	2.792e^-6	0.209	INTERGENIC	TF binding site mE1_TFBS_cad
3L	712455	3L_712455_SNP [dm3] 3L_712455_SNP [dm6]	C	T	2.963e^-6	0.214	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	3910709	3L_3910709_SNP [dm3] 3L_3910709_SNP [dm6]	G	T	3.243e^-6	0.225	UTR_3_PRIME Eip63F-1 UPSTREAM mge DOWNSTREAM Eip63F-1
3R	25973021	3R_25973021_SNP [dm3] 3R_30147299_SNP [dm6]	T	C	4.186e^-6	0.268	INTRON AdoR
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	4.211e^-6	0.268	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	712323	3L_712323_SNP [dm3] 3L_712323_SNP [dm6]	T	A	4.286e^-6	0.268	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	4016813	2L_4016813_SNP [dm3] 2L_4016813_SNP [dm6]	T	C	4.597e^-6	0.278	INTERGENIC
2L	6508912	2L_6508912_SNP [dm3] 2L_6508912_SNP [dm6]	T	A	6.163e^-6	0.361	UPSTREAM CR44775 INTRON CG31637	TF binding site BDTNP1_TFBS_hb
3L	708572	3L_708572_SNP [dm3] 3L_708572_SNP [dm6]	T	A	6.384e^-6	0.363	UPSTREAM CG13895 DOWNSTREAM CkIIalpha-i3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
3L	7889240	3L_7889240_SNP [dm3] 3L_7896140_SNP [dm6]	C	T	7.630e^-6	0.414	UTR_3_PRIME pbl DOWNSTREAM eIF4E-5
3L	712501	3L_712501_SNP [dm3] 3L_712501_SNP [dm6]	C	G	7.750e^-6	0.414	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	7889244	3L_7889244_DEL [dm3] 3L_7896144_DEL [dm6]	TATTAACTTAAACATCTTCA...	T	7.954e^-6	0.414	UTR_3_PRIME pbl DOWNSTREAM eIF4E-5
3L	712322	3L_712322_SNP [dm3] 3L_712322_SNP [dm6]	A	G	9.086e^-6	0.46	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	10969435	3L_10969435_SNP [dm3] 3L_10976335_SNP [dm6]	A	C	1.023e^-5	0.476	INTERGENIC	TF binding site mE1_TFBS_cad
3R	23777427	3R_23777427_SNP [dm3] 3R_27951705_SNP [dm6]	A	G	1.032e^-5	0.476	SYNONYMOUS_CODING Gp93 DOWNSTREAM CG4951	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12971257	3R_12971257_SNP [dm3] 3R_17145535_SNP [dm6]	A	C	1.042e^-5	0.476	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3R	12971260	3R_12971260_DEL [dm3] 3R_17145538_DEL [dm6]	AGGTAAGCATCCTA...	G	1.042e^-5	0.476	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
2R	9147155	2R_9147155_SNP [dm3] 2R_13259650_SNP [dm6]	A	T	1.178e^-5	0.523	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
X	21160839	X_21160839_SNP [dm3] X_21289812_SNP [dm6]	T	C	1.199e^-5	0.523	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8207850	3L_8207850_SNP [dm3] 3L_8214750_SNP [dm6]	T	C	1.261e^-5	0.537	UPSTREAM CG8012 INTERGENIC
3L	712622	3L_712622_SNP [dm3] 3L_712622_SNP [dm6]	G	A	1.353e^-5	0.555	UPSTREAM CG13896 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	711093	3L_711093_SNP [dm3] 3L_711093_SNP [dm6]	C	G	1.409e^-5	0.555	NON_SYNONYMOUS_CODING CG13896 UPSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3R	13570329	3R_13570329_SNP [dm3] 3R_17744607_SNP [dm6]	A	C	1.436e^-5	0.555	INTRON TyrRII	TF binding site mE1_TFBS_cad
2R	19502631	2R_19502631_SNP [dm3] 2R_23615108_SNP [dm6]	T	C	1.474e^-5	0.555	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
2L	1034963	2L_1034963_SNP [dm3] 2L_1034963_SNP [dm6]	A	G	1.476e^-5	0.555	UPSTREAM IA-2 INTRON IA-2
3R	23777355	3R_23777355_SNP [dm3] 3R_27951633_SNP [dm6]	C	T	1.481e^-5	0.555	SYNONYMOUS_CODING Gp93 DOWNSTREAM CG4951	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16864219	2R_16864219_SNP [dm3] 2R_20976714_SNP [dm6]	G	A	1.658e^-5	0.575	UPSTREAM CG9344 DOWNSTREAM CG15650 INTRON CG34115	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	711108	3L_711108_SNP [dm3] 3L_711108_SNP [dm6]	G	T	1.669e^-5	0.575	NON_SYNONYMOUS_CODING CG13896 UPSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
3L	11020856	3L_11020856_DEL [dm3] 3L_11027756_DEL [dm6]	TA	T	1.707e^-5	0.575	DOWNSTREAM CG32079 INTRON CG32081
2L	4596035	2L_4596035_SNP [dm3] 2L_4596035_SNP [dm6]	T	A	1.710e^-5	0.575	UPSTREAM dp INTRON dp	TF binding site mE1_TFBS_HSA
3R	27112009	3R_27112009_SNP [dm3] 3R_31286287_SNP [dm6]	C	T	1.717e^-5	0.575	INTERGENIC
3R	25621372	3R_25621372_SNP [dm3] 3R_29795650_SNP [dm6]	C	T	1.718e^-5	0.575	SYNONYMOUS_CODING sro DOWNSTREAM CG7837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21160844	X_21160844_SNP [dm3] X_21289817_SNP [dm6]	G	C	1.771e^-5	0.576	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18463732	X_18463732_SNP [dm3] X_18569699_SNP [dm6]	A	G	1.781e^-5	0.576	INTRON Bx	TF binding site BDTNP1_TFBS_da
3L	3795416	3L_3795416_SNP [dm3] 3L_3795416_SNP [dm6]	C	A	1.817e^-5	0.577	UPSTREAM CG32264 INTRON CG32264
3L	1718447	3L_1718447_SNP [dm3] 3L_1718447_SNP [dm6]	T	C	2.262e^-5	0.689	INTRON drpr	TF binding site BDTNP1_TFBS_sna
X	4557427	X_4557427_SNP [dm3] X_4663394_SNP [dm6]	G	A	2.271e^-5	0.689	INTRON CG3009
2L	588419	2L_588419_SNP [dm3] 2L_588419_SNP [dm6]	T	A	2.280e^-5	0.689	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
3L	11020859	3L_11020859_SNP [dm3] 3L_11027759_SNP [dm6]	T	A	2.408e^-5	0.689	DOWNSTREAM CG32079 INTRON CG32081
X	2310890	X_2310890_SNP [dm3] X_2416857_SNP [dm6]	C	G	2.416e^-5	0.689	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1834297	2L_1834297_SNP [dm3] 2L_1834297_SNP [dm6]	A	G	2.423e^-5	0.689	INTERGENIC
2R	9147422	2R_9147422_SNP [dm3] 2R_13259917_SNP [dm6]	A	T	2.521e^-5	0.689	UPSTREAM CG42319 INTERGENIC
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	2.548e^-5	0.689	EXON CR44950
2L	4596038	2L_4596038_SNP [dm3] 2L_4596038_SNP [dm6]	G	T	2.571e^-5	0.689	UPSTREAM dp INTRON dp	TF binding site mE1_TFBS_HSA
2R	9147435	2R_9147435_SNP [dm3] 2R_13259930_SNP [dm6]	T	A	2.577e^-5	0.689	UPSTREAM CG42319 INTERGENIC
2R	9147482	2R_9147482_SNP [dm3] 2R_13259977_SNP [dm6]	A	G	2.593e^-5	0.689	UPSTREAM CG42319 INTERGENIC
3R	27111842	3R_27111842_SNP [dm3] 3R_31286120_SNP [dm6]	A	C	2.671e^-5	0.689	INTERGENIC
2L	5862491	2L_5862491_SNP [dm3] 2L_5862491_SNP [dm6]	C	T	2.671e^-5	0.689	INTRON rau
3R	4342921	3R_4342921_SNP [dm3] 3R_8517199_SNP [dm6]	C	T	2.694e^-5	0.689	UPSTREAM CG11737 INTERGENIC
X	13136787	X_13136787_SNP [dm3] X_13242754_SNP [dm6]	C	T	2.734e^-5	0.689	INTRON mew	TF binding site BDTNP1_TFBS_da
2R	17920112	2R_17920112_SNP [dm3] 2R_22032607_SNP [dm6]	G	T	2.785e^-5	0.689	INTRON CG34370
2L	21055222	2L_21055222_SNP [dm3] 2L_21055222_SNP [dm6]	A	T	2.793e^-5	0.689	NON_SYNONYMOUS_CODING Itgbetanu	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4159131	3L_4159131_DEL [dm3] 3L_4159131_DEL [dm6]	GG	G	2.837e^-5	0.691	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3R	10410917	3R_10410917_SNP [dm3] 3R_14585195_SNP [dm6]	A	T	2.878e^-5	0.692	INTRON stumps	TF binding site BDTNP1_TFBS_prd
2L	19855447	2L_19855447_SNP [dm3] 2L_19855447_SNP [dm6]	A	T	2.995e^-5	0.7	INTRON sick
2R	6016574	2R_6016574_SNP [dm3] 2R_10129069_SNP [dm6]	G	A	3.000e^-5	0.7	INTRON gem	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	11599845	3L_11599845_SNP [dm3] 3L_11606745_SNP [dm6]	T	C	3.025e^-5	0.7	SYNONYMOUS_CODING CG6091
2L	7615841	2L_7615841_SNP [dm3] 2L_7615841_SNP [dm6]	C	T	3.309e^-5	0.737	SYNONYMOUS_CODING CG6739 UTR_3_PRIME CG6739
3L	441402	3L_441402_SNP [dm3] 3L_441402_SNP [dm6]	C	G	3.353e^-5	0.737	UPSTREAM klar INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_Trl
3L	2645600	3L_2645600_SNP [dm3] 3L_2645600_SNP [dm6]	A	T	3.473e^-5	0.737	INTRON CG1143	TF binding site mE1_TFBS_cad
3L	11223911	3L_11223911_SNP [dm3] 3L_11230811_SNP [dm6]	C	T	3.473e^-5	0.737	DOWNSTREAM CR45405 & 1 other INTERGENIC
2R	14172514	2R_14172514_SNP [dm3] 2R_18285009_SNP [dm6]	T	A	3.475e^-5	0.737	DOWNSTREAM sbb INTRON sbb
3L	17103452	3L_17103452_SNP [dm3] 3L_17110352_SNP [dm6]	T	C	3.483e^-5	0.737	INTRON Rbp6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14687332	3L_14687332_SNP [dm3] 3L_14694232_SNP [dm6]	C	T	3.498e^-5	0.737	INTRON ome
3R	6726397	3R_6726397_SNP [dm3] 3R_10900675_SNP [dm6]	A	G	3.500e^-5	0.737	INTERGENIC
2R	17621665	2R_17621665_SNP [dm3] 2R_21734160_SNP [dm6]	T	A	3.661e^-5	0.745	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	17920188	2R_17920188_DEL [dm3] 2R_22032683_DEL [dm6]	GGGCTGG	G	3.695e^-5	0.745	INTRON CG34370
3L	7479975	3L_7479975_SNP [dm3] 3L_7486875_SNP [dm6]	T	C	3.722e^-5	0.745	SYNONYMOUS_CODING mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	588349	2L_588349_SNP [dm3] 2L_588349_SNP [dm6]	T	C	3.728e^-5	0.745	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3265674	2R_3265674_SNP [dm3] 2R_7378169_SNP [dm6]	A	C	3.748e^-5	0.745	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
X	9816859	X_9816859_DEL [dm3] X_9922826_DEL [dm6]	CC	C	3.777e^-5	0.745	INTERGENIC
2R	19502482	2R_19502482_SNP [dm3] 2R_23614959_SNP [dm6]	T	C	3.882e^-5	0.745	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
3R	21391526	3R_21391526_SNP [dm3] 3R_25565804_SNP [dm6]	G	A	3.937e^-5	0.745	INTRON msi
2R	16864005	2R_16864005_SNP [dm3] 2R_20976500_SNP [dm6]	A	T	3.951e^-5	0.745	UPSTREAM CG9344 INTRON CG34115	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	24412989	3R_24412989_SNP [dm3] 3R_28587267_SNP [dm6]	T	C	3.960e^-5	0.745	EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	11586547	3R_11586547_SNP [dm3] 3R_15760825_SNP [dm6]	G	A	4.021e^-5	0.745	INTERGENIC
2R	10090612	2R_10090612_SNP [dm3] 2R_14203107_SNP [dm6]	T	C	4.089e^-5	0.745	SYNONYMOUS_CODING Sox15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	21386998	3L_21386998_SNP [dm3] 3L_21393898_SNP [dm6]	G	A	4.098e^-5	0.745	INTRON rgn
3L	19496781	3L_19496781_SNP [dm3] 3L_19503681_SNP [dm6]	G	A	4.159e^-5	0.745	START_GAINED CG9452 UTR_5_PRIME CG9452
2R	3257613	2R_3257613_SNP [dm3] 2R_7370108_SNP [dm6]	C	T	4.175e^-5	0.745	INTRON Dscam1
X	7680449	X_7680449_SNP [dm3] X_7786416_SNP [dm6]	A	T	4.190e^-5	0.745	INTERGENIC
2L	696649	2L_696649_SNP [dm3] 2L_696649_SNP [dm6]	T	A	4.215e^-5	0.745	INTRON ds	TF binding site mE1_TFBS_Trl
3R	5145048	3R_5145048_SNP [dm3] 3R_9319326_SNP [dm6]	G	A	4.293e^-5	0.752	INTRON CG8861
3L	4619448	3L_4619448_SNP [dm3] 3L_4619448_SNP [dm6]	C	T	4.375e^-5	0.755	INTRON Src64B
3L	13231125	3L_13231125_SNP [dm3] 3L_13238025_SNP [dm6]	A	G	4.393e^-5	0.755	INTRON caps	TF binding site mE1_TFBS_HSA
3R	10436941	3R_10436941_SNP [dm3] 3R_14611219_SNP [dm6]	G	C	4.460e^-5	0.759	INTRON CG14853
3L	8151400	3L_8151400_SNP [dm3] 3L_8158300_SNP [dm6]	A	T	4.514e^-5	0.759	INTRON CG42445
2R	9147438	2R_9147438_SNP [dm3] 2R_13259933_SNP [dm6]	G	A	4.543e^-5	0.759	UPSTREAM CG42319 INTERGENIC
3R	23777424	3R_23777424_SNP [dm3] 3R_27951702_SNP [dm6]	C	T	4.640e^-5	0.759	SYNONYMOUS_CODING Gp93 DOWNSTREAM CG4951	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18464186	X_18464186_SNP [dm3] X_18570153_SNP [dm6]	C	A	4.651e^-5	0.759	INTRON Bx	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
3R	25570656	3R_25570656_SNP [dm3] 3R_29744934_SNP [dm6]	G	A	4.693e^-5	0.759	SYNONYMOUS_CODING CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	781261	3L_781261_SNP [dm3] 3L_781261_SNP [dm6]	G	T	4.704e^-5	0.759	INTERGENIC
3L	22701905	3L_22701905_SNP [dm3] 3L_22708805_SNP [dm6]	C	A	4.736e^-5	0.759	INTERGENIC
3R	10212692	3R_10212692_SNP [dm3] 3R_14386970_SNP [dm6]	G	A	4.814e^-5	0.76	INTERGENIC
2R	3603547	2R_3603547_SNP [dm3] 2R_7716042_SNP [dm6]	T	G	4.861e^-5	0.76	NON_SYNONYMOUS_CODING CG1946 DOWNSTREAM CG18812	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14695058	2L_14695058_SNP [dm3] 2L_14695058_SNP [dm6]	G	A	4.895e^-5	0.76	INTERGENIC
2L	2737430	2L_2737430_SNP [dm3] 2L_2737430_SNP [dm6]	T	C	4.903e^-5	0.76	SYNONYMOUS_CODING CG31689 UPSTREAM mir-4914
3L	12615746	3L_12615746_MNP [dm3] 3L_12622646_MNP [dm6]	GAA	AGC	5.015e^-5	0.769	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11132888	3L_11132888_SNP [dm3] 3L_11139788_SNP [dm6]	G	A	5.331e^-5	0.769	INTRON CG32082
X	21460806	X_21460806_SNP [dm3] X_21589779_SNP [dm6]	G	T	5.332e^-5	0.769	INTERGENIC
3R	19357158	3R_19357158_SNP [dm3] 3R_23531436_SNP [dm6]	T	C	5.392e^-5	0.769	UPSTREAM CG10175 INTERGENIC
3L	8647382	3L_8647382_SNP [dm3] 3L_8654282_SNP [dm6]	T	C	5.458e^-5	0.769	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13135334	X_13135334_DEL [dm3] X_13241301_DEL [dm6]	AAG	A	5.512e^-5	0.769	INTRON mew
X	21063578	X_21063578_SNP [dm3] X_21192551_SNP [dm6]	G	A	5.535e^-5	0.769	UPSTREAM CG14579 INTERGENIC
2L	19912411	2L_19912411_SNP [dm3] 2L_19912411_SNP [dm6]	C	A	5.545e^-5	0.769	UPSTREAM CR43097 & 1 other DOWNSTREAM Victoria INTRON sick
3R	25779128	3R_25779128_SNP [dm3] 3R_29953406_SNP [dm6]	G	A	5.639e^-5	0.769	SYNONYMOUS_CODING TkR99D
X	12956239	X_12956239_SNP [dm3] X_13062206_SNP [dm6]	T	G	5.677e^-5	0.769	DOWNSTREAM mir-971 INTRON rad
3L	10252986	3L_10252986_SNP [dm3] 3L_10259886_SNP [dm6]	C	T	5.682e^-5	0.769	INTERGENIC
2R	16863939	2R_16863939_SNP [dm3] 2R_20976434_SNP [dm6]	T	A	5.716e^-5	0.769	UPSTREAM CG9344 INTRON CG34115	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10212782	3R_10212782_SNP [dm3] 3R_14387060_SNP [dm6]	G	C	5.805e^-5	0.769	INTERGENIC
3R	27111734	3R_27111734_SNP [dm3] 3R_31286012_SNP [dm6]	G	C	5.829e^-5	0.769	INTERGENIC
3L	12615738	3L_12615738_SNP [dm3] 3L_12622638_SNP [dm6]	C	G	5.856e^-5	0.769	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	1151921	3L_1151921_SNP [dm3] 3L_1151921_SNP [dm6]	T	G	5.902e^-5	0.769	INTRON bab2
3L	4785472	3L_4785472_SNP [dm3] 3L_4785472_SNP [dm6]	T	A	5.928e^-5	0.769	INTRON RhoGEF64C
3L	13310290	3L_13310290_SNP [dm3] 3L_13317190_SNP [dm6]	T	G	6.040e^-5	0.769	INTERGENIC
X	16154167	X_16154167_SNP [dm3] X_16260134_SNP [dm6]	T	A	6.048e^-5	0.769	INTERGENIC
2R	19289455	2R_19289455_SNP [dm3] 2R_23401932_SNP [dm6]	T	C	6.053e^-5	0.769	INTRON CG3520	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	7209302	3L_7209302_INS [dm3] 3L_7216202_INS [dm6]	T	TGCTTTT	6.059e^-5	0.769	INTERGENIC
3R	25125893	3R_25125893_INS [dm3] 3R_29300171_INS [dm6]	A	AA	6.129e^-5	0.769	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	25125906	3R_25125906_SNP [dm3] 3R_29300184_SNP [dm6]	A	C	6.129e^-5	0.769	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	781289	3L_781289_SNP [dm3] 3L_781289_SNP [dm6]	T	C	6.181e^-5	0.769	INTERGENIC
X	14154319	X_14154319_SNP [dm3] X_14260286_SNP [dm6]	G	C	6.181e^-5	0.769	UPSTREAM CG1461 INTERGENIC
3L	2646789	3L_2646789_SNP [dm3] 3L_2646789_SNP [dm6]	T	G	6.192e^-5	0.769	UTR_3_PRIME CG1143 DOWNSTREAM CG1143
2L	10560968	2L_10560968_SNP [dm3] 2L_10560968_SNP [dm6]	T	A	6.199e^-5	0.769	INTRON Trim9
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	6.237e^-5	0.769	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4596046	2L_4596046_SNP [dm3] 2L_4596046_SNP [dm6]	C	A	6.260e^-5	0.769	UPSTREAM dp INTRON dp	TF binding site mE1_TFBS_HSA
3L	712066	3L_712066_SNP [dm3] 3L_712066_SNP [dm6]	G	A	6.276e^-5	0.769	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	8447265	2L_8447265_SNP [dm3] 2L_8447265_SNP [dm6]	A	G	6.291e^-5	0.769	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	9849318	X_9849318_DEL [dm3] X_9955285_DEL [dm6]	TCGACT	T	6.293e^-5	0.769	INTERGENIC
3R	5143723	3R_5143723_SNP [dm3] 3R_9318001_SNP [dm6]	A	C	6.355e^-5	0.769	INTRON CG8861
3R	4401702	3R_4401702_DEL [dm3] 3R_8575980_DEL [dm6]	GCATTTGCGGCTGATTAAAG...	G	6.417e^-5	0.769	INTERGENIC
X	9849341	X_9849341_SNP [dm3] X_9955308_SNP [dm6]	C	T	6.470e^-5	0.769	INTERGENIC
3L	1718230	3L_1718230_SNP [dm3] 3L_1718230_SNP [dm6]	A	G	6.498e^-5	0.769	INTRON drpr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15697740	2R_15697740_SNP [dm3] 2R_19810235_SNP [dm6]	T	G	6.558e^-5	0.769	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2646631	3L_2646631_SNP [dm3] 3L_2646631_SNP [dm6]	T	A	6.559e^-5	0.769	UTR_3_PRIME CG1143 DOWNSTREAM CG1143	TF binding site mE1_TFBS_cad
3L	713048	3L_713048_SNP [dm3] 3L_713048_SNP [dm6]	G	C	6.624e^-5	0.769	INTERGENIC	TF binding site mE1_TFBS_sens
3R	11246634	3R_11246634_SNP [dm3] 3R_15420912_SNP [dm6]	A	G	6.652e^-5	0.769	DOWNSTREAM CG6118 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
2R	17920187	2R_17920187_SNP [dm3] 2R_22032682_SNP [dm6]	G	T	6.715e^-5	0.769	INTRON CG34370
3R	9813668	3R_9813668_DEL [dm3] 3R_13987946_DEL [dm6]	ATC	A	6.762e^-5	0.769	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	6.772e^-5	0.769	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
3L	16209784	3L_16209784_SNP [dm3] 3L_16216684_SNP [dm6]	C	T	6.796e^-5	0.769	INTRON CG13073
3R	25394600	3R_25394600_SNP [dm3] 3R_29568878_SNP [dm6]	A	T	6.881e^-5	0.769	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10689171	3L_10689171_SNP [dm3] 3L_10696071_SNP [dm6]	T	A	6.887e^-5	0.769	INTRON NijA
3R	21344585	3R_21344585_SNP [dm3] 3R_25518863_SNP [dm6]	G	T	6.919e^-5	0.769	INTRON msi	TF binding site mE1_TFBS_Trl
2R	9147063	2R_9147063_SNP [dm3] 2R_13259558_SNP [dm6]	G	A	6.932e^-5	0.769	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3R	10437015	3R_10437015_SNP [dm3] 3R_14611293_SNP [dm6]	A	T	7.014e^-5	0.77	INTRON CG14853
2R	11327910	2R_11327910_SNP [dm3] 2R_15440405_SNP [dm6]	T	C	7.041e^-5	0.77	INTRON CG43729
2L	7615825	2L_7615825_SNP [dm3] 2L_7615825_SNP [dm6]	C	A	7.109e^-5	0.77	NON_SYNONYMOUS_CODING CG6739 UTR_3_PRIME CG6739
3L	7480613	3L_7480613_SNP [dm3] 3L_7487513_SNP [dm6]	A	G	7.141e^-5	0.77	INTRON mthl6
3R	27111680	3R_27111680_SNP [dm3] 3R_31285958_SNP [dm6]	A	C	7.255e^-5	0.77	INTERGENIC
X	10569471	X_10569471_SNP [dm3] X_10675438_SNP [dm6]	A	C	7.268e^-5	0.77	INTRON X11Lbeta
3L	12025545	3L_12025545_SNP [dm3] 3L_12032445_SNP [dm6]	A	T	7.269e^-5	0.77	UPSTREAM CG43993 INTRON rols
2L	3437649	2L_3437649_SNP [dm3] 2L_3437649_SNP [dm6]	A	T	7.273e^-5	0.77	INTERGENIC
2L	387696	2L_387696_SNP [dm3] 2L_387696_SNP [dm6]	T	A	7.326e^-5	0.772	DOWNSTREAM al INTERGENIC
2R	3276948	2R_3276948_SNP [dm3] 2R_7389443_SNP [dm6]	A	G	7.382e^-5	0.773	SYNONYMOUS_CODING CG11107
3R	22643443	3R_22643443_SNP [dm3] 3R_26817721_SNP [dm6]	T	G	7.453e^-5	0.774	INTRON Tl
3R	2867864	3R_2867864_SNP [dm3] 3R_7042142_SNP [dm6]	A	C	7.470e^-5	0.774	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18636906	X_18636906_SNP [dm3] X_18742873_SNP [dm6]	C	T	7.593e^-5	0.782	INTERGENIC
X	2245881	X_2245881_SNP [dm3] X_2351848_SNP [dm6]	A	C	7.689e^-5	0.784	INTRON ptr
2L	7202010	2L_7202010_SNP [dm3] 2L_7202010_SNP [dm6]	C	T	7.700e^-5	0.784	INTRON CG4502
3R	8780521	3R_8780521_SNP [dm3] 3R_12954799_SNP [dm6]	C	G	7.741e^-5	0.784	INTRON grsm
2R	6016548	2R_6016548_SNP [dm3] 2R_10129043_SNP [dm6]	C	T	7.895e^-5	0.79	INTRON gem	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	14687330	3L_14687330_SNP [dm3] 3L_14694230_SNP [dm6]	A	G	7.950e^-5	0.79	INTRON ome
2L	388595	2L_388595_SNP [dm3] 2L_388595_SNP [dm6]	G	T	8.126e^-5	0.79	INTERGENIC
3R	12970762	3R_12970762_SNP [dm3] 3R_17145040_SNP [dm6]	A	T	8.154e^-5	0.79	UTR_3_PRIME m-cup DOWNSTREAM m-cup
3L	4556835	3L_4556835_SNP [dm3] 3L_4556835_SNP [dm6]	T	C	8.220e^-5	0.79	UPSTREAM CG42540 INTRON CG42540
3L	16331253	3L_16331253_SNP [dm3] 3L_16338153_SNP [dm6]	G	C	8.358e^-5	0.79	UPSTREAM CG4998 INTERGENIC
2L	8447278	2L_8447278_SNP [dm3] 2L_8447278_SNP [dm6]	T	G	8.410e^-5	0.79	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	9823760	3R_9823760_SNP [dm3] 3R_13998038_SNP [dm6]	T	C	8.417e^-5	0.79	INTRON rdx	TF binding site mE1_TFBS_HSA
2L	7365708	2L_7365708_SNP [dm3] 2L_7365708_SNP [dm6]	C	T	8.575e^-5	0.79	INTRON Wnt10
X	19921445	X_19921445_SNP [dm3] X_20027412_SNP [dm6]	T	C	8.686e^-5	0.79	INTRON Dop2R
2L	5519040	2L_5519040_SNP [dm3] 2L_5519040_SNP [dm6]	G	C	8.764e^-5	0.79	SYNONYMOUS_CODING CG7382 DOWNSTREAM CG14020	TF binding site BDTNP1_TFBS_hb mE1_TFBS_sens
2R	14992287	2R_14992287_SNP [dm3] 2R_19104782_SNP [dm6]	G	A	8.808e^-5	0.79	INTRON 5-HT1A
3R	13019603	3R_13019603_SNP [dm3] 3R_17193881_SNP [dm6]	A	G	8.837e^-5	0.79	INTRON Mur89F
3L	4534212	3L_4534212_SNP [dm3] 3L_4534212_SNP [dm6]	G	T	8.839e^-5	0.79	INTRON CG11353
3L	6845475	3L_6845475_SNP [dm3] 3L_6852375_SNP [dm6]	G	T	8.863e^-5	0.79	INTERGENIC
3L	1718694	3L_1718694_SNP [dm3] 3L_1718694_SNP [dm6]	T	C	8.870e^-5	0.79	INTRON drpr	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	14992266	2R_14992266_SNP [dm3] 2R_19104761_SNP [dm6]	T	G	8.931e^-5	0.79	INTRON 5-HT1A
X	6453447	X_6453447_SNP [dm3] X_6559414_SNP [dm6]	G	A	8.956e^-5	0.79	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_inv
2L	20987601	2L_20987601_SNP [dm3] 2L_20987601_SNP [dm6]	T	A	8.979e^-5	0.79	INTRON CG42238
2L	20987602	2L_20987602_SNP [dm3] 2L_20987602_SNP [dm6]	G	T	8.979e^-5	0.79	INTRON CG42238
3R	22160103	3R_22160103_SNP [dm3] 3R_26334381_SNP [dm6]	A	T	9.007e^-5	0.79	INTRON CG33970
3R	5709131	3R_5709131_SNP [dm3] 3R_9883409_SNP [dm6]	C	G	9.029e^-5	0.79	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25974815	3R_25974815_SNP [dm3] 3R_30149093_SNP [dm6]	T	A	9.144e^-5	0.79	INTRON AdoR
2R	4952865	2R_4952865_SNP [dm3] 2R_9065360_SNP [dm6]	G	A	9.152e^-5	0.79	INTRON ana	regulatory region REDfly_CRMs
3L	23347366	3L_23347366_SNP [dm3] 3L_23354266_SNP [dm6]	A	T	9.249e^-5	0.79	INTERGENIC
2L	4596019	2L_4596019_SNP [dm3] 2L_4596019_SNP [dm6]	A	G	9.287e^-5	0.79	UPSTREAM dp INTRON dp	TF binding site mE1_TFBS_HSA
3L	4556798	3L_4556798_SNP [dm3] 3L_4556798_SNP [dm6]	C	A	9.303e^-5	0.79	UPSTREAM CG42540 INTRON CG42540
2R	9147038	2R_9147038_SNP [dm3] 2R_13259533_SNP [dm6]	G	A	9.316e^-5	0.79	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
X	2310627	X_2310627_SNP [dm3] X_2416594_SNP [dm6]	T	C	9.339e^-5	0.79	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_sens
2R	16864584	2R_16864584_SNP [dm3] 2R_20977079_SNP [dm6]	G	A	9.353e^-5	0.79	UTR_5_PRIME CG9344 DOWNSTREAM CG15650 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	16245081	3L_16245081_SNP [dm3] 3L_16251981_SNP [dm6]	G	T	9.420e^-5	0.79	SYNONYMOUS_CODING CG13055	TF binding site mE1_TFBS_chinmo
3R	27111740	3R_27111740_SNP [dm3] 3R_31286018_SNP [dm6]	C	T	9.465e^-5	0.79	INTERGENIC
2R	10090609	2R_10090609_SNP [dm3] 2R_14203104_SNP [dm6]	T	C	9.478e^-5	0.79	SYNONYMOUS_CODING Sox15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19505508	2R_19505508_SNP [dm3] 2R_23617985_SNP [dm6]	T	G	9.529e^-5	0.79	INTERGENIC
3L	2646601	3L_2646601_SNP [dm3] 3L_2646601_SNP [dm6]	T	C	9.557e^-5	0.79	UTR_3_PRIME CG1143	TF binding site mE1_TFBS_cad
2R	12278778	2R_12278778_SNP [dm3] 2R_16391273_SNP [dm6]	G	A	9.598e^-5	0.79	INTRON Sema-2b	TF binding site mE1_TFBS_chinmo
2R	9147010	2R_9147010_SNP [dm3] 2R_13259505_SNP [dm6]	T	G	9.626e^-5	0.79	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3R	2952106	3R_2952106_SNP [dm3] 3R_7126384_SNP [dm6]	G	A	9.631e^-5	0.79	UTR_3_PRIME CG10098 & 1 other
3L	11132648	3L_11132648_SNP [dm3] 3L_11139548_SNP [dm6]	T	C	9.643e^-5	0.79	INTRON CG32082
3L	17089048	3L_17089048_SNP [dm3] 3L_17095948_SNP [dm6]	T	A	9.673e^-5	0.79	INTRON Rbp6
3L	12025599	3L_12025599_SNP [dm3] 3L_12032499_SNP [dm6]	T	C	9.818e^-5	0.79	UPSTREAM CG43993 INTRON rols
3L	16921097	3L_16921097_SNP [dm3] 3L_16927997_SNP [dm6]	C	T	9.832e^-5	0.79	UPSTREAM CG13023 DOWNSTREAM CG11905 INTERGENIC
2R	4952874	2R_4952874_SNP [dm3] 2R_9065369_SNP [dm6]	G	A	9.849e^-5	0.79	INTRON ana	regulatory region REDfly_CRMs
2L	4596027	2L_4596027_SNP [dm3] 2L_4596027_SNP [dm6]	C	T	9.865e^-5	0.79	UPSTREAM dp INTRON dp	TF binding site mE1_TFBS_HSA
3R	13019604	3R_13019604_INS [dm3] 3R_17193882_INS [dm6]	A	AACCTATTGAACCTATTGAA...	9.909e^-5	0.79	INTRON Mur89F
3R	20661715	3R_20661715_SNP [dm3] 3R_24835993_SNP [dm6]	T	A	9.923e^-5	0.79	UPSTREAM sosie INTRON sosie EXON CR45216	TF binding site BDTNP1_TFBS_dl
X	13135298	X_13135298_SNP [dm3] X_13241265_SNP [dm6]	A	G	9.939e^-5	0.79	INTRON mew
3L	12025589	3L_12025589_SNP [dm3] 3L_12032489_SNP [dm6]	G	A	9.998e^-5	0.79	UPSTREAM CG43993 INTRON rols
2L	9487588	2L_9487588_SNP [dm3] 2L_9487588_SNP [dm6]	A	G	1.001e^-4	0.79	INTERGENIC
3L	7479848	3L_7479848_SNP [dm3] 3L_7486748_SNP [dm6]	C	A	1.006e^-4	0.79	SPLICE_SITE_REGION mthl6 INTRON mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2645611	3L_2645611_SNP [dm3] 3L_2645611_SNP [dm6]	C	A	1.014e^-4	0.79	INTRON CG1143	TF binding site mE1_TFBS_cad
2R	9147026	2R_9147026_SNP [dm3] 2R_13259521_SNP [dm6]	T	A	1.017e^-4	0.79	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3L	3872457	3L_3872457_SNP [dm3] 3L_3872457_SNP [dm6]	A	G	1.017e^-4	0.79	INTERGENIC	TF binding site mE1_TFBS_cad
3R	2919124	3R_2919124_SNP [dm3] 3R_7093402_SNP [dm6]	T	C	1.019e^-4	0.79	UPSTREAM e_y_2b EXON CR43685	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	9638379	X_9638379_SNP [dm3] X_9744346_SNP [dm6]	T	C	1.022e^-4	0.79	INTRON Sp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	16163210	X_16163210_SNP [dm3] X_16269177_SNP [dm6]	G	A	1.027e^-4	0.79	SYNONYMOUS_CODING kat80
3L	4556796	3L_4556796_INS [dm3] 3L_4556796_INS [dm6]	T	TA	1.029e^-4	0.79	UPSTREAM CG42540 INTRON CG42540
3L	12646436	3L_12646436_SNP [dm3] 3L_12653336_SNP [dm6]	A	T	1.030e^-4	0.79	UPSTREAM CR43431 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	18985584	2R_18985584_SNP [dm3] 2R_23098061_SNP [dm6]	T	C	1.032e^-4	0.79	INTERGENIC
3R	24413164	3R_24413164_SNP [dm3] 3R_28587442_SNP [dm6]	C	T	1.032e^-4	0.79	EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	21460373	X_21460373_SNP [dm3] X_21589346_SNP [dm6]	T	G	1.043e^-4	0.79	INTERGENIC
3L	7151647	3L_7151647_SNP [dm3] 3L_7158547_SNP [dm6]	A	G	1.043e^-4	0.79	NON_SYNONYMOUS_CODING CG8620 DOWNSTREAM Dscam2 INTRON CG8620
3R	5137887	3R_5137887_SNP [dm3] 3R_9312165_SNP [dm6]	A	G	1.045e^-4	0.79	INTRON CG8861
3L	7151653	3L_7151653_SNP [dm3] 3L_7158553_SNP [dm6]	A	G	1.057e^-4	0.796	NON_SYNONYMOUS_CODING CG8620 DOWNSTREAM Dscam2 INTRON CG8620
2L	18944951	2L_18944951_SNP [dm3] 2L_18944951_SNP [dm6]	T	C	1.071e^-4	0.796	UPSTREAM ssp3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
X	6490536	X_6490536_SNP [dm3] X_6596503_SNP [dm6]	A	C	1.092e^-4	0.796	UTR_3_PRIME Pat1 UPSTREAM APC7
3L	677700	3L_677700_SNP [dm3] 3L_677700_SNP [dm6]	T	A	1.092e^-4	0.796	DOWNSTREAM CG17129 INTERGENIC
3R	10914332	3R_10914332_SNP [dm3] 3R_15088610_SNP [dm6]	A	G	1.095e^-4	0.796	INTRON CG6966
X	9814806	X_9814806_DEL [dm3] X_9920773_DEL [dm6]	TT	T	1.095e^-4	0.796	INTERGENIC
3L	11223898	3L_11223898_SNP [dm3] 3L_11230798_SNP [dm6]	G	T	1.098e^-4	0.796	DOWNSTREAM CR45405 & 1 other INTERGENIC
3R	25125888	3R_25125888_SNP [dm3] 3R_29300166_SNP [dm6]	C	A	1.104e^-4	0.796	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	23219566	3L_23219566_SNP [dm3] 3L_23226466_SNP [dm6]	A	G	1.107e^-4	0.796	INTRON nAChRalpha4	transposable element FlyBase
3R	3965610	3R_3965610_SNP [dm3] 3R_8139888_SNP [dm6]	T	C	1.108e^-4	0.796	UPSTREAM tRNA:N5:84F DOWNSTREAM tRNA:R2:84Fe & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	7897466	X_7897466_SNP [dm3] X_8003433_SNP [dm6]	T	C	1.108e^-4	0.796	INTRON Tbh
3L	18010104	3L_18010104_SNP [dm3] 3L_18017004_SNP [dm6]	T	G	1.120e^-4	0.796	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
3L	11132647	3L_11132647_SNP [dm3] 3L_11139547_SNP [dm6]	T	C	1.121e^-4	0.796	INTRON CG32082
2R	16965216	2R_16965216_SNP [dm3] 2R_21077711_SNP [dm6]	A	C	1.126e^-4	0.796	INTRON Treh
X	3934025	X_3934025_SNP [dm3] X_4039992_SNP [dm6]	C	A	1.130e^-4	0.796	INTERGENIC
3R	14660016	3R_14660016_SNP [dm3] 3R_18834294_SNP [dm6]	G	A	1.132e^-4	0.796	INTRON CG18208
3R	2693041	3R_2693041_SNP [dm3] 3R_6867319_SNP [dm6]	G	A	1.137e^-4	0.796	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2R	9534155	2R_9534155_SNP [dm3] 2R_13646650_SNP [dm6]	T	A	1.142e^-4	0.796	INTRON fas
X	17333603	X_17333603_SNP [dm3] X_17439570_SNP [dm6]	G	C	1.143e^-4	0.796	INTRON CG12994
2R	14271151	2R_14271151_SNP [dm3] 2R_18383646_SNP [dm6]	C	T	1.148e^-4	0.796	UPSTREAM IM1 & 2 others INTERGENIC
3L	16937100	3L_16937100_DEL [dm3] 3L_16944000_DEL [dm6]	CCGCA	T	1.149e^-4	0.796	UPSTREAM Obp73a INTERGENIC	TF binding site mE1_TFBS_cad
2R	9147009	2R_9147009_SNP [dm3] 2R_13259504_SNP [dm6]	T	G	1.150e^-4	0.796	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2L	4622633	2L_4622633_SNP [dm3] 2L_4622633_SNP [dm6]	A	T	1.153e^-4	0.796	INTERGENIC
2L	8957160	2L_8957160_SNP [dm3] 2L_8957160_SNP [dm6]	C	A	1.157e^-4	0.796	INTRON CG31886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	1420838	3L_1420838_SNP [dm3] 3L_1420838_SNP [dm6]	G	T	1.162e^-4	0.796	DOWNSTREAM CG9173 INTRON Ptp61F
3L	7257545	3L_7257545_SNP [dm3] 3L_7264445_SNP [dm6]	T	A	1.166e^-4	0.796	UPSTREAM CG14830 INTERGENIC
X	2245867	X_2245867_SNP [dm3] X_2351834_SNP [dm6]	A	C	1.167e^-4	0.796	INTRON ptr
3L	20945746	3L_20945746_SNP [dm3] 3L_20952646_SNP [dm6]	G	A	1.171e^-4	0.796	INTERGENIC
2L	8954661	2L_8954661_SNP [dm3] 2L_8954661_SNP [dm6]	G	A	1.178e^-4	0.797	SYNONYMOUS_CODING CG31886	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	12110433	2R_12110433_SNP [dm3] 2R_16222928_SNP [dm6]	T	A	1.199e^-4	0.807	UPSTREAM CG7798 DOWNSTREAM CG15706 EXON CR43898
3L	109064	3L_109064_SNP [dm3] 3L_109064_SNP [dm6]	A	G	1.215e^-4	0.807	INTERGENIC
3R	13175133	3R_13175133_SNP [dm3] 3R_17349411_SNP [dm6]	A	C	1.215e^-4	0.807	INTRON beat-IIa
3L	1572399	3L_1572399_SNP [dm3] 3L_1572399_SNP [dm6]	T	C	1.223e^-4	0.807	SYNONYMOUS_CODING CG12004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	14271149	2R_14271149_SNP [dm3] 2R_18383644_SNP [dm6]	A	T	1.227e^-4	0.807	UPSTREAM IM1 & 2 others INTERGENIC
3L	2994853	3L_2994853_SNP [dm3] 3L_2994853_SNP [dm6]	T	C	1.227e^-4	0.807	UPSTREAM CG2113 INTERGENIC
2R	6795339	2R_6795339_SNP [dm3] 2R_10907834_SNP [dm6]	G	T	1.230e^-4	0.807	INTERGENIC
2L	7786143	2L_7786143_SNP [dm3] 2L_7786143_SNP [dm6]	A	T	1.238e^-4	0.807	DOWNSTREAM CG7149 & 1 other INTERGENIC
3L	15213586	3L_15213586_SNP [dm3] 3L_15220486_SNP [dm6]	T	G	1.252e^-4	0.807	INTERGENIC
2L	588293	2L_588293_SNP [dm3] 2L_588293_SNP [dm6]	G	T	1.266e^-4	0.807	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	711035	3L_711035_SNP [dm3] 3L_711035_SNP [dm6]	A	G	1.270e^-4	0.807	SYNONYMOUS_CODING CG13896 UPSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	10828948	3R_10828948_SNP [dm3] 3R_15003226_SNP [dm6]	C	A	1.270e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	391184	3L_391184_SNP [dm3] 3L_391184_SNP [dm6]	C	A	1.272e^-4	0.807	DOWNSTREAM CR45378 INTRON trh
2L	8118957	2L_8118957_SNP [dm3] 2L_8118957_SNP [dm6]	G	A	1.275e^-4	0.807	SYNONYMOUS_CODING mon2
2L	13624457	2L_13624457_SNP [dm3] 2L_13624457_SNP [dm6]	G	T	1.276e^-4	0.807	INTRON kuz
3R	12739886	3R_12739886_SNP [dm3] 3R_16914164_SNP [dm6]	A	G	1.279e^-4	0.807	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	15505998	2L_15505998_SNP [dm3] 2L_15505998_SNP [dm6]	G	C	1.285e^-4	0.807	DOWNSTREAM lace INTERGENIC
2L	14689608	2L_14689608_SNP [dm3] 2L_14689608_SNP [dm6]	A	G	1.290e^-4	0.807	UPSTREAM osp INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	14844238	X_14844238_SNP [dm3] X_14950205_SNP [dm6]	A	G	1.291e^-4	0.807	INTRON pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	1.297e^-4	0.807	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	3599792	2R_3599792_SNP [dm3] 2R_7712287_SNP [dm6]	A	G	1.302e^-4	0.807	UPSTREAM CG1942 DOWNSTREAM mir-4909 & 1 other INTERGENIC
2R	18542253	2R_18542253_SNP [dm3] 2R_22654748_SNP [dm6]	A	T	1.304e^-4	0.807	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG30196 & 2 others INTERGENIC	TF binding site mE1_TFBS_cad
2L	3825075	2L_3825075_SNP [dm3] 2L_3825075_SNP [dm6]	T	A	1.305e^-4	0.807	UPSTREAM slp1 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	7202011	2L_7202011_SNP [dm3] 2L_7202011_SNP [dm6]	G	A	1.310e^-4	0.807	INTRON CG4502
3L	16202527	3L_16202527_SNP [dm3] 3L_16209427_SNP [dm6]	C	T	1.313e^-4	0.807	INTERGENIC
3L	11168307	3L_11168307_SNP [dm3] 3L_11175207_SNP [dm6]	T	A	1.314e^-4	0.807	INTRON CG14142
2R	8372456	2R_8372456_SNP [dm3] 2R_12484951_SNP [dm6]	C	T	1.323e^-4	0.807	INTRON Dh44-R2
3L	7832751	3L_7832751_SNP [dm3] 3L_7839651_SNP [dm6]	A	T	1.331e^-4	0.807	INTRON Pdp1	regulatory region REDfly_CRMs
3R	19322132	3R_19322132_SNP [dm3] 3R_23496410_SNP [dm6]	A	C	1.337e^-4	0.807	INTERGENIC
3L	5886015	3L_5886015_SNP [dm3] 3L_5892915_SNP [dm6]	C	G	1.338e^-4	0.807	INTERGENIC
3L	16727528	3L_16727528_SNP [dm3] 3L_16734428_SNP [dm6]	T	C	1.342e^-4	0.807	SYNONYMOUS_CODING CG9701
2R	14572042	2R_14572042_SNP [dm3] 2R_18684537_SNP [dm6]	C	T	1.342e^-4	0.807	SYNONYMOUS_CODING CG44433 UPSTREAM CG44434 & 1 other
2R	11327929	2R_11327929_SNP [dm3] 2R_15440424_SNP [dm6]	G	T	1.354e^-4	0.807	INTRON CG43729
2L	4595970	2L_4595970_SNP [dm3] 2L_4595970_SNP [dm6]	G	A	1.366e^-4	0.807	UPSTREAM dp INTRON dp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4619439	3L_4619439_SNP [dm3] 3L_4619439_SNP [dm6]	T	A	1.371e^-4	0.807	INTRON Src64B
3R	15134591	3R_15134591_SNP [dm3] 3R_19308869_SNP [dm6]	T	C	1.374e^-4	0.807	INTRON Dl
3L	4011471	3L_4011471_SNP [dm3] 3L_4011471_SNP [dm6]	A	C	1.376e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4512888	2L_4512888_SNP [dm3] 2L_4512888_SNP [dm6]	G	A	1.377e^-4	0.807	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10030942	X_10030942_SNP [dm3] X_10136909_SNP [dm6]	C	T	1.384e^-4	0.807	INTRON CR44894 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1587132	3L_1587132_SNP [dm3] 3L_1587132_SNP [dm6]	C	G	1.388e^-4	0.807	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	1587227	3L_1587227_SNP [dm3] 3L_1587227_SNP [dm6]	G	A	1.388e^-4	0.807	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4622688	2L_4622688_SNP [dm3] 2L_4622688_SNP [dm6]	T	A	1.394e^-4	0.807	INTERGENIC
2R	6723366	2R_6723366_DEL [dm3] 2R_10835861_DEL [dm6]	CAGCGATGGGG...	C	1.395e^-4	0.807	UPSTREAM CG12344 DOWNSTREAM CG7686 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	5462305	X_5462305_INS [dm3] X_5568272_INS [dm6]	A	ACACA	1.404e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	10627152	3L_10627152_SNP [dm3] 3L_10634052_SNP [dm6]	C	T	1.408e^-4	0.807	DOWNSTREAM E_z_ & 1 other INTRON CG34001
X	10569521	X_10569521_SNP [dm3] X_10675488_SNP [dm6]	T	A	1.408e^-4	0.807	INTRON X11Lbeta
X	21458725	X_21458725_SNP [dm3] X_21587698_SNP [dm6]	T	C	1.409e^-4	0.807	INTERGENIC
2L	5246395	2L_5246395_SNP [dm3] 2L_5246395_SNP [dm6]	T	A	1.416e^-4	0.807	INTRON tkv	TF binding site mE1_TFBS_cnc
3R	10811112	3R_10811112_SNP [dm3] 3R_14985390_SNP [dm6]	T	C	1.417e^-4	0.807	INTERGENIC
3R	10914325	3R_10914325_SNP [dm3] 3R_15088603_SNP [dm6]	A	G	1.435e^-4	0.807	INTRON CG6966
2L	588413	2L_588413_SNP [dm3] 2L_588413_SNP [dm6]	T	C	1.448e^-4	0.807	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
2R	9775436	2R_9775436_SNP [dm3] 2R_13887931_SNP [dm6]	G	A	1.449e^-4	0.807	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8590702	3L_8590702_SNP [dm3] 3L_8597602_SNP [dm6]	G	A	1.454e^-4	0.807	NON_SYNONYMOUS_CODING CG43078	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17090129	3L_17090129_SNP [dm3] 3L_17097029_SNP [dm6]	A	T	1.456e^-4	0.807	INTRON Rbp6
3L	21321484	3L_21321484_SNP [dm3] 3L_21328384_SNP [dm6]	C	T	1.462e^-4	0.807	INTRON Rab26
3L	4737896	3L_4737896_SNP [dm3] 3L_4737896_SNP [dm6]	G	A	1.468e^-4	0.807	INTRON RhoGEF64C
3L	4821645	3L_4821645_SNP [dm3] 3L_4821645_SNP [dm6]	C	G	1.475e^-4	0.807	INTRON Dhc64C
3L	4821647	3L_4821647_SNP [dm3] 3L_4821647_SNP [dm6]	A	G	1.475e^-4	0.807	INTRON Dhc64C
2R	9326594	2R_9326594_SNP [dm3] 2R_13439089_SNP [dm6]	T	A	1.479e^-4	0.807	UPSTREAM CG42321 DOWNSTREAM cnn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
3L	17089087	3L_17089087_INS [dm3] 3L_17095987_INS [dm6]	A	AGATCT	1.479e^-4	0.807	INTRON Rbp6
3R	25570751	3R_25570751_SNP [dm3] 3R_29745029_SNP [dm6]	A	C	1.501e^-4	0.807	START_GAINED CG7609 UTR_5_PRIME CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	378373	2L_378373_SNP [dm3] 2L_378373_SNP [dm6]	A	T	1.506e^-4	0.807	UTR_5_PRIME al	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	4622595	2L_4622595_SNP [dm3] 2L_4622595_SNP [dm6]	T	A	1.512e^-4	0.807	INTERGENIC
2L	16967656	2L_16967656_SNP [dm3] 2L_16967656_SNP [dm6]	A	G	1.512e^-4	0.807	INTERGENIC
3L	11132894	3L_11132894_SNP [dm3] 3L_11139794_SNP [dm6]	A	G	1.517e^-4	0.807	INTRON CG32082
3R	26485874	3R_26485874_SNP [dm3] 3R_30660152_SNP [dm6]	C	A	1.529e^-4	0.807	INTERGENIC
3L	22919731	3L_22919731_SNP [dm3] 3L_22926631_SNP [dm6]	A	C	1.532e^-4	0.807	INTERGENIC
2R	9147034	2R_9147034_SNP [dm3] 2R_13259529_SNP [dm6]	G	T	1.535e^-4	0.807	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
X	14844256	X_14844256_SNP [dm3] X_14950223_SNP [dm6]	C	T	1.537e^-4	0.807	INTRON pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	19344001	X_19344001_SNP [dm3] X_19449968_SNP [dm6]	A	C	1.540e^-4	0.807	INTRON kek5
3L	11705019	3L_11705019_SNP [dm3] 3L_11711919_SNP [dm6]	G	A	1.542e^-4	0.807	UPSTREAM crim DOWNSTREAM CG14132 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	11654717	2L_11654717_SNP [dm3] 2L_11654717_SNP [dm6]	G	A	1.548e^-4	0.807	DOWNSTREAM CG4983 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25570881	3R_25570881_SNP [dm3] 3R_29745159_SNP [dm6]	A	T	1.553e^-4	0.807	UPSTREAM IntS11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6841546	2L_6841546_SNP [dm3] 2L_6841546_SNP [dm6]	A	G	1.554e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7257520	3L_7257520_SNP [dm3] 3L_7264420_SNP [dm6]	T	G	1.557e^-4	0.807	UPSTREAM CG14830 INTERGENIC
X	14511435	X_14511435_SNP [dm3] X_14617402_SNP [dm6]	A	T	1.568e^-4	0.807	INTRON NetA
3L	4619278	3L_4619278_DEL [dm3] 3L_4619278_DEL [dm6]	GCTGGATTGCTTATAAAG...	G	1.573e^-4	0.807	INTRON Src64B
X	9849152	X_9849152_SNP [dm3] X_9955119_SNP [dm6]	T	A	1.574e^-4	0.807	INTERGENIC
3L	23307174	3L_23307174_SNP [dm3] 3L_23314074_SNP [dm6]	A	T	1.578e^-4	0.807	INTERGENIC	transposable element FlyBase
3L	6845349	3L_6845349_SNP [dm3] 3L_6852249_SNP [dm6]	A	G	1.581e^-4	0.807	INTERGENIC
3R	25302641	3R_25302641_SNP [dm3] 3R_29476919_SNP [dm6]	G	T	1.589e^-4	0.807	INTRON Ptp99A
2L	10471653	2L_10471653_SNP [dm3] 2L_10471653_SNP [dm6]	C	A	1.593e^-4	0.807	SYNONYMOUS_CODING RluA-1	TF binding site mE1_TFBS_chinmo
2R	16289319	2R_16289319_SNP [dm3] 2R_20401814_SNP [dm6]	C	T	1.595e^-4	0.807	INTERGENIC
3L	7257565	3L_7257565_SNP [dm3] 3L_7264465_SNP [dm6]	C	T	1.604e^-4	0.807	UPSTREAM CG14830 INTERGENIC
2R	14545141	2R_14545141_SNP [dm3] 2R_18657636_SNP [dm6]	T	C	1.611e^-4	0.807	DOWNSTREAM Gint3 & 1 other INTRON SP2637
2L	3825069	2L_3825069_SNP [dm3] 2L_3825069_SNP [dm6]	T	C	1.614e^-4	0.807	UPSTREAM slp1 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	4622584	2L_4622584_SNP [dm3] 2L_4622584_SNP [dm6]	A	T	1.627e^-4	0.807	INTERGENIC
2L	8507658	2L_8507658_SNP [dm3] 2L_8507658_SNP [dm6]	G	C	1.628e^-4	0.807	UPSTREAM Dh31 INTERGENIC
3L	1982891	3L_1982891_INS [dm3] 3L_1982891_INS [dm6]	G	GGGGCTG	1.632e^-4	0.807	INTERGENIC
3R	22612276	3R_22612276_DEL [dm3] 3R_26786554_DEL [dm6]	TT	T	1.636e^-4	0.807	DOWNSTREAM CG42790 INTERGENIC
X	6890537	X_6890537_SNP [dm3] X_6996504_SNP [dm6]	T	A	1.648e^-4	0.807	INTRON Inx7 EXON CR43837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14811233	3L_14811233_SNP [dm3] 3L_14818133_SNP [dm6]	C	T	1.650e^-4	0.807	INTRON CG17839
2L	7207197	2L_7207197_SNP [dm3] 2L_7207197_SNP [dm6]	A	G	1.651e^-4	0.807	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784	TF binding site mE1_TFBS_sens
2R	17536263	2R_17536263_SNP [dm3] 2R_21648758_SNP [dm6]	G	T	1.651e^-4	0.807	INTRON CG10082	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	19921473	X_19921473_INS [dm3] X_20027440_INS [dm6]	A	AGCTGTCGAGATCTAA...	1.654e^-4	0.807	INTRON Dop2R
3L	7479886	3L_7479886_SNP [dm3] 3L_7486786_SNP [dm6]	C	T	1.656e^-4	0.807	INTRON mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12457966	2R_12457966_SNP [dm3] 2R_16570461_SNP [dm6]	T	A	1.660e^-4	0.807	DOWNSTREAM CG4945 INTRON RpS15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11695257	2R_11695257_INS [dm3] 2R_15807752_INS [dm6]	T	TT	1.661e^-4	0.807	INTRON tun & 1 other
2R	6016861	2R_6016861_SNP [dm3] 2R_10129356_SNP [dm6]	T	G	1.669e^-4	0.807	INTRON gem
3R	15213950	3R_15213950_SNP [dm3] 3R_19388228_SNP [dm6]	G	A	1.669e^-4	0.807	DOWNSTREAM CR34285 INTRON Ino80 & 1 other	TF binding site mE1_TFBS_sens
X	14067509	X_14067509_SNP [dm3] X_14173476_SNP [dm6]	A	T	1.674e^-4	0.807	UPSTREAM betaNACtes1 INTERGENIC
3R	25505855	3R_25505855_SNP [dm3] 3R_29680133_SNP [dm6]	G	C	1.675e^-4	0.807	SYNONYMOUS_CODING Cap-D2 DOWNSTREAM CG7582	TF binding site mE1_TFBS_cad
2L	20991674	2L_20991674_SNP [dm3] 2L_20991674_SNP [dm6]	C	A	1.677e^-4	0.807	INTRON CG42238
X	13137038	X_13137038_SNP [dm3] X_13243005_SNP [dm6]	A	G	1.686e^-4	0.807	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	7202015	2L_7202015_SNP [dm3] 2L_7202015_SNP [dm6]	C	A	1.688e^-4	0.807	INTRON CG4502
3L	6100199	3L_6100199_SNP [dm3] 3L_6107099_SNP [dm6]	C	T	1.695e^-4	0.807	INTRON Ets65A	TF binding site mE1_TFBS_cad
3L	4619440	3L_4619440_SNP [dm3] 3L_4619440_SNP [dm6]	A	T	1.707e^-4	0.807	INTRON Src64B
3L	2998253	3L_2998253_SNP [dm3] 3L_2998253_SNP [dm6]	A	G	1.710e^-4	0.807	INTERGENIC
3R	4400876	3R_4400876_INS [dm3] 3R_8575154_INS [dm6]	T	TT	1.713e^-4	0.807	INTERGENIC
3R	21344893	3R_21344893_SNP [dm3] 3R_25519171_SNP [dm6]	T	A	1.719e^-4	0.807	INTRON msi
3R	23777457	3R_23777457_SNP [dm3] 3R_27951735_SNP [dm6]	G	A	1.734e^-4	0.807	SYNONYMOUS_CODING Gp93 DOWNSTREAM CG4951	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3324729	X_3324729_SNP [dm3] X_3430696_SNP [dm6]	C	T	1.735e^-4	0.807	INTRON CR44999 & 1 other
2R	15839547	2R_15839547_SNP [dm3] 2R_19952042_SNP [dm6]	A	T	1.735e^-4	0.807	DOWNSTREAM CG10822 INTERGENIC
2R	16864024	2R_16864024_SNP [dm3] 2R_20976519_SNP [dm6]	A	C	1.739e^-4	0.807	UPSTREAM CG9344 INTRON CG34115	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	16863923	2R_16863923_SNP [dm3] 2R_20976418_SNP [dm6]	C	G	1.741e^-4	0.807	UPSTREAM CG9344 INTRON CG34115	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	589172	2L_589172_SNP [dm3] 2L_589172_SNP [dm6]	C	T	1.749e^-4	0.807	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
X	6672866	X_6672866_SNP [dm3] X_6778833_SNP [dm6]	C	G	1.753e^-4	0.807	INTRON shf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco
3R	27112061	3R_27112061_SNP [dm3] 3R_31286339_SNP [dm6]	A	C	1.753e^-4	0.807	INTERGENIC
3L	14815465	3L_14815465_SNP [dm3] 3L_14822365_SNP [dm6]	G	A	1.757e^-4	0.807	INTRON CG17839
X	16420343	X_16420343_SNP [dm3] X_16526310_SNP [dm6]	T	A	1.760e^-4	0.807	UPSTREAM Cnx14D INTRON para	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
2R	18278806	2R_18278806_SNP [dm3] 2R_22391301_SNP [dm6]	A	G	1.763e^-4	0.807	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9849284	X_9849284_SNP [dm3] X_9955251_SNP [dm6]	A	C	1.767e^-4	0.807	INTERGENIC
3L	12025610	3L_12025610_SNP [dm3] 3L_12032510_SNP [dm6]	A	T	1.774e^-4	0.807	UPSTREAM CG43993 INTRON rols
3L	57377	3L_57377_SNP [dm3] 3L_57377_SNP [dm6]	C	T	1.774e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	21946828	X_21946828_SNP [dm3] X_22544992_SNP [dm6]	A	G	1.778e^-4	0.807	UPSTREAM CG17599 INTERGENIC
X	13137037	X_13137037_SNP [dm3] X_13243004_SNP [dm6]	C	T	1.779e^-4	0.807	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	25570319	3R_25570319_SNP [dm3] 3R_29744597_SNP [dm6]	A	G	1.780e^-4	0.807	SYNONYMOUS_CODING CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4578862	2L_4578862_SNP [dm3] 2L_4578862_SNP [dm6]	G	A	1.796e^-4	0.807	UPSTREAM HP6 INTRON dp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2868311	3R_2868311_INS [dm3] 3R_7042589_INS [dm6]	C	CGGA	1.796e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	5390657	3L_5390657_SNP [dm3] 3L_5397557_SNP [dm6]	T	G	1.797e^-4	0.807	INTERGENIC
2L	2347231	2L_2347231_SNP [dm3] 2L_2347231_SNP [dm6]	A	G	1.798e^-4	0.807	INTRON CG9967 & 1 other
3L	4606376	3L_4606376_SNP [dm3] 3L_4606376_SNP [dm6]	C	G	1.800e^-4	0.807	INTRON Src64B
3R	15214327	3R_15214327_SNP [dm3] 3R_19388605_SNP [dm6]	C	T	1.808e^-4	0.807	SYNONYMOUS_CODING CG3734 INTRON Ino80	TF binding site mE1_TFBS_sens
2L	10129257	2L_10129257_SNP [dm3] 2L_10129257_SNP [dm6]	C	A	1.809e^-4	0.807	INTRON CG44153
3L	3872317	3L_3872317_DEL [dm3] 3L_3872317_DEL [dm6]	AACTACGAGTCTTTTTTCAG...	A	1.810e^-4	0.807	INTERGENIC
3L	4619365	3L_4619365_SNP [dm3] 3L_4619365_SNP [dm6]	C	T	1.811e^-4	0.807	INTRON Src64B
3L	7257549	3L_7257549_SNP [dm3] 3L_7264449_SNP [dm6]	T	A	1.813e^-4	0.807	UPSTREAM CG14830 INTERGENIC
3L	10518960	3L_10518960_SNP [dm3] 3L_10525860_SNP [dm6]	T	G	1.819e^-4	0.807	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7479945	3L_7479945_SNP [dm3] 3L_7486845_SNP [dm6]	T	C	1.824e^-4	0.807	SYNONYMOUS_CODING mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	441963	3L_441963_SNP [dm3] 3L_441963_SNP [dm6]	C	T	1.836e^-4	0.807	UPSTREAM klar DOWNSTREAM klar INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
2L	8507668	2L_8507668_SNP [dm3] 2L_8507668_SNP [dm6]	G	C	1.844e^-4	0.807	UPSTREAM Dh31 INTERGENIC
2R	9328321	2R_9328321_SNP [dm3] 2R_13440816_SNP [dm6]	T	C	1.858e^-4	0.807	SYNONYMOUS_CODING cnn	TF binding site mE1_TFBS_cad
X	14844263	X_14844263_SNP [dm3] X_14950230_SNP [dm6]	A	C	1.867e^-4	0.807	INTRON pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	17456381	3L_17456381_INS [dm3] 3L_17463281_INS [dm6]	A	AA	1.888e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15507760	3L_15507760_SNP [dm3] 3L_15514660_SNP [dm6]	A	C	1.889e^-4	0.807	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	18542610	2R_18542610_DEL [dm3] 2R_22655105_DEL [dm6]	GTATTGGGGCTC...	G	1.891e^-4	0.807	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other INTRON CG30196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	2479929	X_2479929_SNP [dm3] X_2585896_SNP [dm6]	A	T	1.895e^-4	0.807	UPSTREAM wds & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	20866637	X_20866637_SNP [dm3] X_20995610_SNP [dm6]	G	A	1.896e^-4	0.807	INTERGENIC
3L	74478	3L_74478_SNP [dm3] 3L_74478_SNP [dm6]	C	A	1.897e^-4	0.807	UTR_3_PRIME CG13405 DOWNSTREAM CG13405	TF binding site mE1_TFBS_HSA
3R	23480694	3R_23480694_SNP [dm3] 3R_27654972_SNP [dm6]	A	G	1.898e^-4	0.807	INTRON tau
X	9778558	X_9778558_SNP [dm3] X_9884525_SNP [dm6]	T	A	1.900e^-4	0.807	SYNONYMOUS_CODING CG9691 DOWNSTREAM CG9689
2L	19855421	2L_19855421_SNP [dm3] 2L_19855421_SNP [dm6]	T	C	1.901e^-4	0.807	INTRON sick
3L	4619437	3L_4619437_SNP [dm3] 3L_4619437_SNP [dm6]	A	T	1.908e^-4	0.807	INTRON Src64B
3L	4420326	3L_4420326_SNP [dm3] 3L_4420326_SNP [dm6]	T	C	1.915e^-4	0.807	UTR_3_PRIME DOR DOWNSTREAM DOR
3L	23612119	3L_23612119_SNP [dm3] 3L_23619019_SNP [dm6]	G	A	1.937e^-4	0.807	INTRON AGO3
3R	26618148	3R_26618148_SNP [dm3] 3R_30792426_SNP [dm6]	T	G	1.952e^-4	0.807	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
3L	4373691	3L_4373691_SNP [dm3] 3L_4373691_SNP [dm6]	A	C	1.966e^-4	0.807	INTRON DopEcR
X	4461691	X_4461691_SNP [dm3] X_4567658_SNP [dm6]	G	A	1.980e^-4	0.807	INTRON CR32773
3L	12615764	3L_12615764_SNP [dm3] 3L_12622664_SNP [dm6]	T	A	1.993e^-4	0.807	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25571021	3R_25571021_SNP [dm3] 3R_29745299_SNP [dm6]	G	A	1.995e^-4	0.807	UPSTREAM IntS11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	1881029	3L_1881029_SNP [dm3] 3L_1881029_SNP [dm6]	A	G	1.995e^-4	0.807	INTRON CG13937	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18478641	3R_18478641_SNP [dm3] 3R_22652919_SNP [dm6]	G	T	1.998e^-4	0.807	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7257534	3L_7257534_SNP [dm3] 3L_7264434_SNP [dm6]	T	A	2.023e^-4	0.807	UPSTREAM CG14830 INTERGENIC
2L	1834285	2L_1834285_SNP [dm3] 2L_1834285_SNP [dm6]	A	G	2.046e^-4	0.807	INTERGENIC
2L	1479197	2L_1479197_SNP [dm3] 2L_1479197_SNP [dm6]	C	T	2.049e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1474417	2L_1474417_SNP [dm3] 2L_1474417_SNP [dm6]	C	T	2.049e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16864986	2R_16864986_SNP [dm3] 2R_20977481_SNP [dm6]	A	G	2.054e^-4	0.807	UTR_3_PRIME CG9344 DOWNSTREAM CG15650 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	3325015	X_3325015_SNP [dm3] X_3430982_SNP [dm6]	T	C	2.058e^-4	0.807	INTRON CR44999 & 1 other
3R	19279708	3R_19279708_SNP [dm3] 3R_23453986_SNP [dm6]	G	A	2.060e^-4	0.807	INTRON CG4374
X	7679876	X_7679876_SNP [dm3] X_7785843_SNP [dm6]	G	T	2.064e^-4	0.807	INTERGENIC
3L	1718548	3L_1718548_SNP [dm3] 3L_1718548_SNP [dm6]	C	T	2.068e^-4	0.807	INTRON drpr	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	10560917	2L_10560917_SNP [dm3] 2L_10560917_SNP [dm6]	A	T	2.068e^-4	0.807	INTRON Trim9
3L	4737895	3L_4737895_SNP [dm3] 3L_4737895_SNP [dm6]	A	G	2.071e^-4	0.807	INTRON RhoGEF64C
3L	4443062	3L_4443062_SNP [dm3] 3L_4443062_SNP [dm6]	T	A	2.072e^-4	0.807	INTERGENIC
3L	7257559	3L_7257559_SNP [dm3] 3L_7264459_SNP [dm6]	G	A	2.074e^-4	0.807	UPSTREAM CG14830 INTERGENIC
2R	16864034	2R_16864034_SNP [dm3] 2R_20976529_SNP [dm6]	T	A	2.083e^-4	0.807	UPSTREAM CG9344 INTRON CG34115	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	19633508	3L_19633508_DEL [dm3] 3L_19640408_DEL [dm6]	GTTTG	G	2.093e^-4	0.807	UTR_3_PRIME CG8786 INTRON CG8786
2L	4016824	2L_4016824_SNP [dm3] 2L_4016824_SNP [dm6]	C	T	2.095e^-4	0.807	INTERGENIC
3R	26486380	3R_26486380_SNP [dm3] 3R_30660658_SNP [dm6]	A	T	2.095e^-4	0.807	INTERGENIC
3L	7257564	3L_7257564_SNP [dm3] 3L_7264464_SNP [dm6]	C	T	2.104e^-4	0.807	UPSTREAM CG14830 INTERGENIC
2R	11330066	2R_11330066_SNP [dm3] 2R_15442561_SNP [dm6]	G	T	2.110e^-4	0.807	INTRON CG43729
2R	14788478	2R_14788478_SNP [dm3] 2R_18900973_SNP [dm6]	C	T	2.115e^-4	0.807	INTRON sano
2R	16863271	2R_16863271_SNP [dm3] 2R_20975766_SNP [dm6]	T	G	2.123e^-4	0.807	INTRON CG34115	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	14271140	2R_14271140_SNP [dm3] 2R_18383635_SNP [dm6]	A	T	2.129e^-4	0.807	UPSTREAM IM1 & 2 others INTERGENIC
3R	25570650	3R_25570650_SNP [dm3] 3R_29744928_SNP [dm6]	C	T	2.142e^-4	0.807	SYNONYMOUS_CODING CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6929352	2R_6929352_SNP [dm3] 2R_11041847_SNP [dm6]	A	T	2.145e^-4	0.807	INTRON luna	TF binding site mE1_TFBS_cad
2L	6743782	2L_6743782_INS [dm3] 2L_6743782_INS [dm6]	A	ACTA	2.151e^-4	0.807	DOWNSTREAM CG31910 INTRON CG11221
2L	3825068	2L_3825068_SNP [dm3] 2L_3825068_SNP [dm6]	T	G	2.152e^-4	0.807	UPSTREAM slp1 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	26293307	3R_26293307_SNP [dm3] 3R_30467585_SNP [dm6]	G	A	2.152e^-4	0.807	INTRON PH4alphaEFB	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Kr
2L	8957052	2L_8957052_SNP [dm3] 2L_8957052_SNP [dm6]	C	A	2.154e^-4	0.807	INTRON CG31886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_zfh1
2R	11330036	2R_11330036_SNP [dm3] 2R_15442531_SNP [dm6]	G	C	2.154e^-4	0.807	INTRON CG43729
3L	16202916	3L_16202916_SNP [dm3] 3L_16209816_SNP [dm6]	C	T	2.159e^-4	0.807	INTERGENIC
3L	4557102	3L_4557102_SNP [dm3] 3L_4557102_SNP [dm6]	A	G	2.162e^-4	0.807	UPSTREAM CG42540 INTRON CG42540
3L	1103352	3L_1103352_INS [dm3] 3L_1103352_INS [dm6]	T	TGTAT	2.165e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	4556696	3L_4556696_SNP [dm3] 3L_4556696_SNP [dm6]	T	A	2.174e^-4	0.807	UPSTREAM CG42540 INTRON CG42540
X	19516629	X_19516629_SNP [dm3] X_19622596_SNP [dm6]	G	A	2.183e^-4	0.807	SYNONYMOUS_CODING NAA20 UPSTREAM MKP-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16203783	3L_16203783_SNP [dm3] 3L_16210683_SNP [dm6]	T	G	2.186e^-4	0.807	INTERGENIC
X	19421607	X_19421607_DEL [dm3] X_19527574_DEL [dm6]	CAC	C	2.187e^-4	0.807	UPSTREAM CoRest INTRON CoRest	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1733503	3L_1733503_SNP [dm3] 3L_1733503_SNP [dm6]	G	A	2.191e^-4	0.807	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3872418	3L_3872418_SNP [dm3] 3L_3872418_SNP [dm6]	A	G	2.198e^-4	0.807	INTERGENIC
3R	25978142	3R_25978142_SNP [dm3] 3R_30152420_SNP [dm6]	T	C	2.202e^-4	0.807	DOWNSTREAM CG11498 INTRON CG15529	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	44258	3L_44258_SNP [dm3] 3L_44258_SNP [dm6]	A	G	2.207e^-4	0.807	INTERGENIC
2L	14246210	2L_14246210_SNP [dm3] 2L_14246210_SNP [dm6]	C	T	2.211e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	19178600	2R_19178600_SNP [dm3] 2R_23291077_SNP [dm6]	C	T	2.213e^-4	0.807	EXON CR44783
3L	4147170	3L_4147170_SNP [dm3] 3L_4147170_SNP [dm6]	A	T	2.213e^-4	0.807	INTERGENIC
3L	712810	3L_712810_SNP [dm3] 3L_712810_SNP [dm6]	T	C	2.220e^-4	0.807	UPSTREAM CG13896 INTERGENIC	TF binding site mE1_TFBS_sens
2L	9485629	2L_9485629_SNP [dm3] 2L_9485629_SNP [dm6]	G	A	2.229e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11132880	3L_11132880_SNP [dm3] 3L_11139780_SNP [dm6]	T	C	2.232e^-4	0.807	INTRON CG32082
3R	17023357	3R_17023357_SNP [dm3] 3R_21197635_SNP [dm6]	C	T	2.237e^-4	0.807	INTRON SNF4Agamma
3L	2030412	3L_2030412_SNP [dm3] 3L_2030412_SNP [dm6]	T	C	2.249e^-4	0.807	INTERGENIC
3L	964803	3L_964803_SNP [dm3] 3L_964803_SNP [dm6]	G	A	2.249e^-4	0.807	INTRON Glut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	2706401	2L_2706401_SNP [dm3] 2L_2706401_SNP [dm6]	G	C	2.252e^-4	0.807	INTRON CG31690
2R	19513588	2R_19513588_SNP [dm3] 2R_23626065_SNP [dm6]	G	A	2.254e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19504706	2R_19504706_SNP [dm3] 2R_23617183_SNP [dm6]	T	G	2.275e^-4	0.807	UPSTREAM CG17664 INTERGENIC	TF binding site mE1_TFBS_sens
3R	26964976	3R_26964976_SNP [dm3] 3R_31139254_SNP [dm6]	A	G	2.283e^-4	0.807	INTRON Gycbeta100B
3R	11459568	3R_11459568_SNP [dm3] 3R_15633846_SNP [dm6]	G	T	2.286e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_Kr
X	19011939	X_19011939_SNP [dm3] X_19117906_SNP [dm6]	C	A	2.294e^-4	0.807	INTERGENIC
2R	3990227	2R_3990227_DEL [dm3] 2R_8102722_DEL [dm6]	AA	A	2.295e^-4	0.807	UTR_3_PRIME Cul4 DOWNSTREAM CG11210
2R	16865527	2R_16865527_SNP [dm3] 2R_20978022_SNP [dm6]	C	T	2.307e^-4	0.807	SYNONYMOUS_CODING CG15650 UPSTREAM CG9313 DOWNSTREAM CG9344
3L	13241861	3L_13241861_SNP [dm3] 3L_13248761_SNP [dm6]	G	A	2.307e^-4	0.807	UPSTREAM tRNA:D2:69F & 1 other INTRON caps
2L	9515311	2L_9515311_SNP [dm3] 2L_9515311_SNP [dm6]	T	C	2.309e^-4	0.807	SPLICE_SITE_REGION CG33298 INTRON CG33298
X	10872771	X_10872771_SNP [dm3] X_10978738_SNP [dm6]	T	C	2.309e^-4	0.807	INTRON CG42339
2R	14271036	2R_14271036_SNP [dm3] 2R_18383531_SNP [dm6]	A	T	2.321e^-4	0.807	UPSTREAM IM1 & 1 other INTERGENIC
2L	8668772	2L_8668772_SNP [dm3] 2L_8668772_SNP [dm6]	C	T	2.326e^-4	0.807	UTR_3_PRIME Sema-1a DOWNSTREAM Sema-1a
X	5228684	X_5228684_SNP [dm3] X_5334651_SNP [dm6]	C	T	2.334e^-4	0.807	DOWNSTREAM CanB INTERGENIC
2L	9238068	2L_9238068_DEL [dm3] 2L_9238068_DEL [dm6]	TT	T	2.345e^-4	0.807	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	14545030	2R_14545030_SNP [dm3] 2R_18657525_SNP [dm6]	T	C	2.347e^-4	0.807	DOWNSTREAM Gint3 & 1 other INTRON SP2637
3L	14925605	3L_14925605_SNP [dm3] 3L_14932505_SNP [dm6]	T	G	2.348e^-4	0.807	INTRON DCX-EMAP
2L	588302	2L_588302_SNP [dm3] 2L_588302_SNP [dm6]	A	C	2.355e^-4	0.807	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17621787	2R_17621787_SNP [dm3] 2R_21734282_SNP [dm6]	G	A	2.356e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	16201505	3L_16201505_SNP [dm3] 3L_16208405_SNP [dm6]	C	T	2.359e^-4	0.807	INTERGENIC
3L	951220	3L_951220_SNP [dm3] 3L_951220_SNP [dm6]	G	C	2.365e^-4	0.807	INTRON Glut1
2R	18542589	2R_18542589_SNP [dm3] 2R_22655084_SNP [dm6]	A	G	2.367e^-4	0.807	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other INTRON CG30196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19565658	2R_19565658_SNP [dm3] 2R_23678135_SNP [dm6]	T	G	2.370e^-4	0.807	SYNONYMOUS_CODING Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4636413	3L_4636413_SNP [dm3] 3L_4636413_SNP [dm6]	C	T	2.370e^-4	0.807	DOWNSTREAM axo INTRON axo
3L	45157	3L_45157_INS [dm3] 3L_45157_INS [dm6]	A	AC	2.381e^-4	0.807	INTERGENIC
X	7897437	X_7897437_SNP [dm3] X_8003404_SNP [dm6]	T	G	2.392e^-4	0.807	INTRON Tbh
3L	22839526	3L_22839526_SNP [dm3] 3L_22846426_SNP [dm6]	T	C	2.392e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11575325	2R_11575325_SNP [dm3] 2R_15687820_SNP [dm6]	T	G	2.393e^-4	0.807	NON_SYNONYMOUS_CODING Cep89 DOWNSTREAM Ranbp11	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11621955	3L_11621955_DEL [dm3] 3L_11628855_DEL [dm6]	ATTA	G	2.399e^-4	0.807	UPSTREAM mir-3642 INTRON CG18815
3L	11621966	3L_11621966_DEL [dm3] 3L_11628866_DEL [dm6]	GCAAACAAAACTTACCT...	G	2.399e^-4	0.807	UPSTREAM mir-3642 INTRON CG18815
3L	17089042	3L_17089042_SNP [dm3] 3L_17095942_SNP [dm6]	G	C	2.406e^-4	0.807	INTRON Rbp6
X	4094020	X_4094020_SNP [dm3] X_4199987_SNP [dm6]	T	C	2.408e^-4	0.807	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	7601899	2R_7601899_INS [dm3] 2R_11714394_INS [dm6]	C	ATGGTA	2.408e^-4	0.807	INTRON pyr
2R	14184882	2R_14184882_SNP [dm3] 2R_18297377_SNP [dm6]	C	T	2.423e^-4	0.807	UPSTREAM CG18539 DOWNSTREAM CG18537 INTRON sbb & 1 other
3L	1985377	3L_1985377_INS [dm3] 3L_1985377_INS [dm6]	T	TTTCCATT	2.431e^-4	0.807	INTERGENIC
3L	7480629	3L_7480629_SNP [dm3] 3L_7487529_SNP [dm6]	C	T	2.436e^-4	0.807	INTRON mthl6
X	14844134	X_14844134_SNP [dm3] X_14950101_SNP [dm6]	G	T	2.442e^-4	0.807	INTRON pdgy	TF binding site BDTNP1_TFBS_dl
2L	15549826	2L_15549826_SNP [dm3] 2L_15549826_SNP [dm6]	C	G	2.447e^-4	0.807	UPSTREAM CR45728 & 1 other INTERGENIC
3L	9165840	3L_9165840_SNP [dm3] 3L_9172740_SNP [dm6]	G	T	2.450e^-4	0.807	INTRON Rdl
X	16800014	X_16800014_SNP [dm3] X_16905981_SNP [dm6]	C	G	2.451e^-4	0.807	EXON CR44754
3L	17089067	3L_17089067_SNP [dm3] 3L_17095967_SNP [dm6]	G	A	2.461e^-4	0.807	INTRON Rbp6
3L	12025607	3L_12025607_SNP [dm3] 3L_12032507_SNP [dm6]	T	C	2.466e^-4	0.807	UPSTREAM CG43993 INTRON rols
2L	4147037	2L_4147037_SNP [dm3] 2L_4147037_SNP [dm6]	A	T	2.466e^-4	0.807	INTERGENIC
X	20606552	X_20606552_SNP [dm3] X_20735525_SNP [dm6]	A	G	2.471e^-4	0.807	SYNONYMOUS_CODING CG1324	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4588764	2L_4588764_SNP [dm3] 2L_4588764_SNP [dm6]	C	T	2.476e^-4	0.807	INTRON dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	16864570	2R_16864570_SNP [dm3] 2R_20977065_SNP [dm6]	A	T	2.478e^-4	0.807	UTR_5_PRIME CG9344 DOWNSTREAM CG15650 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	6672816	X_6672816_INS [dm3] X_6778783_INS [dm6]	C	CC	2.487e^-4	0.807	INTRON shf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco
2L	9054294	2L_9054294_SNP [dm3] 2L_9054294_SNP [dm6]	T	A	2.492e^-4	0.807	INTRON CG31708
3L	782103	3L_782103_SNP [dm3] 3L_782103_SNP [dm6]	T	A	2.500e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna
2L	3131466	2L_3131466_SNP [dm3] 2L_3131466_SNP [dm6]	T	C	2.502e^-4	0.807	INTRON toc
X	19517064	X_19517064_SNP [dm3] X_19623031_SNP [dm6]	G	A	2.505e^-4	0.807	UTR_5_PRIME NAA20 UPSTREAM MKP-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17385513	2L_17385513_SNP [dm3] 2L_17385513_SNP [dm6]	C	A	2.506e^-4	0.807	UPSTREAM CLIP-190 INTRON CLIP-190	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Ubx
3R	21395653	3R_21395653_SNP [dm3] 3R_25569931_SNP [dm6]	G	A	2.508e^-4	0.807	INTRON msi
X	3934017	X_3934017_SNP [dm3] X_4039984_SNP [dm6]	T	A	2.508e^-4	0.807	INTERGENIC
X	11330521	X_11330521_SNP [dm3] X_11436488_SNP [dm6]	T	G	2.510e^-4	0.807	INTRON Evi5
3R	25540452	3R_25540452_SNP [dm3] 3R_29714730_SNP [dm6]	T	G	2.523e^-4	0.807	SYNONYMOUS_CODING Obp99d DOWNSTREAM Dup99B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	14702724	2L_14702724_SNP [dm3] 2L_14702724_SNP [dm6]	C	G	2.536e^-4	0.807	INTERGENIC
3R	25672069	3R_25672069_SNP [dm3] 3R_29846347_SNP [dm6]	T	A	2.543e^-4	0.807	INTRON Cad99C
3L	101229	3L_101229_SNP [dm3] 3L_101229_SNP [dm6]	C	A	2.545e^-4	0.807	INTERGENIC
2R	17760433	2R_17760433_SNP [dm3] 2R_21872928_SNP [dm6]	A	T	2.547e^-4	0.807	INTRON Fili	TF binding site mE1_TFBS_D
3L	14385310	3L_14385310_INS [dm3] 3L_14392210_INS [dm6]	T	TGCTCTTAA	2.551e^-4	0.807	INTERGENIC
2R	18010238	2R_18010238_SNP [dm3] 2R_22122733_SNP [dm6]	C	T	2.559e^-4	0.807	UPSTREAM mei-S332 & 1 other INTRON mei-S332	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5518881	2L_5518881_SNP [dm3] 2L_5518881_SNP [dm6]	G	A	2.563e^-4	0.807	UTR_3_PRIME CG14020 DOWNSTREAM CG7382	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
X	13135751	X_13135751_SNP [dm3] X_13241718_SNP [dm6]	C	T	2.570e^-4	0.807	INTRON mew
3R	22284425	3R_22284425_SNP [dm3] 3R_26458703_SNP [dm6]	G	A	2.574e^-4	0.807	INTRON CG14238
X	18464310	X_18464310_SNP [dm3] X_18570277_SNP [dm6]	C	T	2.575e^-4	0.807	INTRON Bx	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
3L	11270074	3L_11270074_SNP [dm3] 3L_11276974_SNP [dm6]	A	G	2.584e^-4	0.807	INTERGENIC
3L	16201618	3L_16201618_SNP [dm3] 3L_16208518_SNP [dm6]	C	A	2.592e^-4	0.807	INTERGENIC
X	7424965	X_7424965_SNP [dm3] X_7530932_SNP [dm6]	G	A	2.595e^-4	0.807	INTRON CG32719
2L	11342741	2L_11342741_SNP [dm3] 2L_11342741_SNP [dm6]	A	T	2.599e^-4	0.807	NON_SYNONYMOUS_CODING CG14926	TF binding site mE1_TFBS_sens
3L	24029588	3L_24029588_SNP [dm3] 3L_24036488_SNP [dm6]	A	G	2.599e^-4	0.807	DOWNSTREAM CG40045 INTERGENIC
3L	15483333	3L_15483333_SNP [dm3] 3L_15490233_SNP [dm6]	T	C	2.619e^-4	0.807	INTERGENIC
X	19518687	X_19518687_SNP [dm3] X_19624654_SNP [dm6]	C	T	2.620e^-4	0.807	UTR_3_PRIME MKP-4	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	3268115	2R_3268115_SNP [dm3] 2R_7380610_SNP [dm6]	G	A	2.621e^-4	0.807	INTRON Dscam1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25434109	3R_25434109_SNP [dm3] 3R_29608387_SNP [dm6]	G	A	2.622e^-4	0.807	UPSTREAM Diedel2 INTRON alph
2R	16246186	2R_16246186_SNP [dm3] 2R_20358681_SNP [dm6]	G	A	2.626e^-4	0.807	INTERGENIC
3L	14558578	3L_14558578_SNP [dm3] 3L_14565478_SNP [dm6]	G	A	2.627e^-4	0.807	INTERGENIC
3L	10408076	3L_10408076_SNP [dm3] 3L_10414976_SNP [dm6]	C	A	2.632e^-4	0.807	DOWNSTREAM CG12362 INTERGENIC
2R	15839546	2R_15839546_SNP [dm3] 2R_19952041_SNP [dm6]	G	T	2.642e^-4	0.807	DOWNSTREAM CG10822 INTERGENIC
3L	12085052	3L_12085052_SNP [dm3] 3L_12091952_SNP [dm6]	C	T	2.645e^-4	0.807	INTERGENIC
3L	9515093	3L_9515093_SNP [dm3] 3L_9521993_SNP [dm6]	C	G	2.648e^-4	0.807	INTRON CG33700
2L	17289734	2L_17289734_SNP [dm3] 2L_17289734_SNP [dm6]	G	C	2.651e^-4	0.807	INTERGENIC
2R	18542624	2R_18542624_SNP [dm3] 2R_22655119_SNP [dm6]	A	T	2.654e^-4	0.807	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other INTRON CG30196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17710257	2R_17710257_SNP [dm3] 2R_21822752_SNP [dm6]	A	G	2.662e^-4	0.807	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8507679	2L_8507679_SNP [dm3] 2L_8507679_SNP [dm6]	T	A	2.669e^-4	0.807	UPSTREAM Dh31 INTERGENIC
2R	17590899	2R_17590899_SNP [dm3] 2R_21703394_SNP [dm6]	G	A	2.677e^-4	0.807	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3L	17089051	3L_17089051_SNP [dm3] 3L_17095951_SNP [dm6]	G	T	2.680e^-4	0.807	INTRON Rbp6
3L	4712167	3L_4712167_SNP [dm3] 3L_4712167_SNP [dm6]	G	A	2.684e^-4	0.807	INTRON RhoGEF64C
2R	19533244	2R_19533244_SNP [dm3] 2R_23645721_SNP [dm6]	G	A	2.686e^-4	0.807	UPSTREAM retn INTRON retn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	4512365	3R_4512365_SNP [dm3] 3R_8686643_SNP [dm6]	G	A	2.697e^-4	0.807	UPSTREAM CR44937 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	696945	2L_696945_SNP [dm3] 2L_696945_SNP [dm6]	C	T	2.699e^-4	0.807	INTRON ds
2L	4168695	2L_4168695_SNP [dm3] 2L_4168695_SNP [dm6]	T	A	2.705e^-4	0.807	INTERGENIC
2L	588357	2L_588357_SNP [dm3] 2L_588357_SNP [dm6]	A	T	2.707e^-4	0.807	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9326364	2R_9326364_SNP [dm3] 2R_13438859_SNP [dm6]	A	T	2.708e^-4	0.807	UTR_5_PRIME CG42321 DOWNSTREAM tRNA:CR30509 & 1 other INTRON CG42321	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	16203503	3L_16203503_SNP [dm3] 3L_16210403_SNP [dm6]	C	A	2.710e^-4	0.807	INTERGENIC
2R	14271043	2R_14271043_DEL [dm3] 2R_18383538_DEL [dm6]	TAATGTCTTC	T	2.712e^-4	0.807	UPSTREAM IM1 & 1 other INTERGENIC
X	4093930	X_4093930_SNP [dm3] X_4199897_SNP [dm6]	T	C	2.712e^-4	0.807	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	6258315	2L_6258315_SNP [dm3] 2L_6258315_SNP [dm6]	T	C	2.720e^-4	0.807	INTRON Ddr
3R	21382116	3R_21382116_SNP [dm3] 3R_25556394_SNP [dm6]	T	C	2.722e^-4	0.807	INTRON msi
2R	14271079	2R_14271079_MNP [dm3] 2R_18383574_MNP [dm6]	ACA	CAG	2.725e^-4	0.807	UPSTREAM IM1 & 2 others INTERGENIC
2L	15303443	2L_15303443_SNP [dm3] 2L_15303443_SNP [dm6]	C	T	2.725e^-4	0.807	INTERGENIC
3L	2324972	3L_2324972_SNP [dm3] 3L_2324972_SNP [dm6]	T	G	2.726e^-4	0.807	INTRON MsR1
X	21946768	X_21946768_SNP [dm3] X_22544932_SNP [dm6]	T	C	2.731e^-4	0.807	UPSTREAM CG17599 INTERGENIC
2L	1276469	2L_1276469_SNP [dm3] 2L_1276469_SNP [dm6]	T	A	2.737e^-4	0.807	INTRON robo3
3R	5138023	3R_5138023_SNP [dm3] 3R_9312301_SNP [dm6]	T	G	2.740e^-4	0.807	INTRON CG8861	TF binding site BDTNP1_TFBS_twi
3R	9664421	3R_9664421_SNP [dm3] 3R_13838699_SNP [dm6]	C	A	2.740e^-4	0.807	UTR_3_PRIME CG31495 UPSTREAM Nsf2	TF binding site BDTNP1_TFBS_dl
X	5438371	X_5438371_SNP [dm3] X_5544338_SNP [dm6]	C	A	2.741e^-4	0.807	INTRON Vsx2
2R	12457959	2R_12457959_SNP [dm3] 2R_16570454_SNP [dm6]	T	C	2.746e^-4	0.807	DOWNSTREAM CG4945 INTRON RpS15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17089047	3L_17089047_SNP [dm3] 3L_17095947_SNP [dm6]	T	A	2.749e^-4	0.807	INTRON Rbp6
3R	26330952	3R_26330952_SNP [dm3] 3R_30505230_SNP [dm6]	A	G	2.753e^-4	0.807	SYNONYMOUS_CODING PH4alphaSG1 UPSTREAM CG15539
3R	22246979	3R_22246979_SNP [dm3] 3R_26421257_SNP [dm6]	G	C	2.755e^-4	0.807	INTERGENIC
2R	8372590	2R_8372590_SNP [dm3] 2R_12485085_SNP [dm6]	T	C	2.756e^-4	0.807	INTRON Dh44-R2
3L	2355003	3L_2355003_SNP [dm3] 3L_2355003_SNP [dm6]	A	G	2.761e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_inv
3R	19279624	3R_19279624_SNP [dm3] 3R_23453902_SNP [dm6]	T	A	2.763e^-4	0.807	INTRON CG4374
2R	18010243	2R_18010243_SNP [dm3] 2R_22122738_SNP [dm6]	G	A	2.764e^-4	0.807	UPSTREAM mei-S332 & 1 other INTRON mei-S332	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5550121	2L_5550121_SNP [dm3] 2L_5550121_SNP [dm6]	A	G	2.766e^-4	0.807	SYNONYMOUS_CODING CG14014 DOWNSTREAM Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17089068	3L_17089068_SNP [dm3] 3L_17095968_SNP [dm6]	A	T	2.770e^-4	0.807	INTRON Rbp6
3L	22105899	3L_22105899_SNP [dm3] 3L_22112799_SNP [dm6]	C	T	2.771e^-4	0.807	INTERGENIC
3L	4619306	3L_4619306_SNP [dm3] 3L_4619306_SNP [dm6]	A	G	2.772e^-4	0.807	INTRON Src64B
3R	21989378	3R_21989378_SNP [dm3] 3R_26163656_SNP [dm6]	G	A	2.776e^-4	0.807	INTERGENIC
3R	21989380	3R_21989380_SNP [dm3] 3R_26163658_SNP [dm6]	T	C	2.776e^-4	0.807	INTERGENIC
2L	6463898	2L_6463898_SNP [dm3] 2L_6463898_SNP [dm6]	A	T	2.777e^-4	0.807	UTR_5_PRIME CG16947	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	26618196	3R_26618196_SNP [dm3] 3R_30792474_SNP [dm6]	C	T	2.777e^-4	0.807	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
3R	2705501	3R_2705501_SNP [dm3] 3R_6879779_SNP [dm6]	T	G	2.779e^-4	0.807	INTRON CR44931	regulatory region FlyBase REDfly_CRMs
3L	15168822	3L_15168822_DEL [dm3] 3L_15175722_DEL [dm6]	CC	C	2.780e^-4	0.807	INTERGENIC
3R	15813243	3R_15813243_SNP [dm3] 3R_19987521_SNP [dm6]	A	T	2.781e^-4	0.807	INTRON Hs6st
3L	781279	3L_781279_SNP [dm3] 3L_781279_SNP [dm6]	G	A	2.782e^-4	0.807	INTERGENIC
X	21458729	X_21458729_SNP [dm3] X_21587702_SNP [dm6]	C	T	2.789e^-4	0.807	INTERGENIC
2R	19890240	2R_19890240_SNP [dm3] 2R_24002717_SNP [dm6]	T	C	2.792e^-4	0.807	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4619404	3L_4619404_SNP [dm3] 3L_4619404_SNP [dm6]	A	G	2.795e^-4	0.807	INTRON Src64B
X	2245699	X_2245699_SNP [dm3] X_2351666_SNP [dm6]	G	A	2.800e^-4	0.807	INTRON ptr
2R	19503954	2R_19503954_SNP [dm3] 2R_23616431_SNP [dm6]	C	T	2.801e^-4	0.807	INTRON CG17664
2L	21056080	2L_21056080_SNP [dm3] 2L_21056080_SNP [dm6]	C	T	2.807e^-4	0.807	INTRON Itgbetanu
3L	12088845	3L_12088845_SNP [dm3] 3L_12095745_SNP [dm6]	T	G	2.810e^-4	0.807	INTERGENIC
2L	2350315	2L_2350315_SNP [dm3] 2L_2350315_SNP [dm6]	T	C	2.813e^-4	0.807	INTRON CG9967 & 1 other
2R	7129375	2R_7129375_SNP [dm3] 2R_11241870_SNP [dm6]	A	C	2.816e^-4	0.807	SYNONYMOUS_CODING Listericin
3R	21989388	3R_21989388_SNP [dm3] 3R_26163666_SNP [dm6]	A	T	2.817e^-4	0.807	INTERGENIC
3L	6021383	3L_6021383_SNP [dm3] 3L_6028283_SNP [dm6]	A	G	2.823e^-4	0.807	INTERGENIC
3L	9515094	3L_9515094_SNP [dm3] 3L_9521994_SNP [dm6]	T	A	2.823e^-4	0.807	INTRON CG33700
3L	12093236	3L_12093236_INS [dm3] 3L_12100136_INS [dm6]	G	GCATC	2.825e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6797948	2R_6797948_SNP [dm3] 2R_10910443_SNP [dm6]	G	T	2.826e^-4	0.807	NON_SYNONYMOUS_CODING Obp47a
2L	4016829	2L_4016829_SNP [dm3] 2L_4016829_SNP [dm6]	C	A	2.828e^-4	0.807	INTERGENIC
2L	6090275	2L_6090275_SNP [dm3] 2L_6090275_SNP [dm6]	C	A	2.832e^-4	0.807	INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2L	13325482	2L_13325482_SNP [dm3] 2L_13325482_SNP [dm6]	C	A	2.835e^-4	0.807	INTRON CG43778
2R	3267946	2R_3267946_SNP [dm3] 2R_7380441_SNP [dm6]	A	T	2.839e^-4	0.807	INTRON Dscam1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	14184884	2R_14184884_SNP [dm3] 2R_18297379_SNP [dm6]	T	A	2.843e^-4	0.807	UPSTREAM CG18539 DOWNSTREAM CG18537 INTRON sbb & 1 other
2R	14184890	2R_14184890_SNP [dm3] 2R_18297385_SNP [dm6]	A	G	2.843e^-4	0.807	UPSTREAM CG18539 DOWNSTREAM CG18537 INTRON sbb & 1 other
3R	4340520	3R_4340520_SNP [dm3] 3R_8514798_SNP [dm6]	T	A	2.843e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	20946369	2R_20946369_SNP [dm3] 2R_25058846_SNP [dm6]	C	T	2.847e^-4	0.807	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3L	1066558	3L_1066558_SNP [dm3] 3L_1066558_SNP [dm6]	C	G	2.849e^-4	0.807	INTRON bab1
2L	21802210	2L_21802210_SNP [dm3] 2L_21802210_SNP [dm6]	G	A	2.855e^-4	0.807	INTERGENIC
3R	25753160	3R_25753160_SNP [dm3] 3R_29927438_SNP [dm6]	T	C	2.859e^-4	0.807	UTR_5_PRIME CG15522
3R	23777517	3R_23777517_SNP [dm3] 3R_27951795_SNP [dm6]	G	A	2.865e^-4	0.807	SYNONYMOUS_CODING Gp93 DOWNSTREAM CG4951	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12744478	3R_12744478_SNP [dm3] 3R_16918756_SNP [dm6]	C	T	2.869e^-4	0.807	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	15839526	2R_15839526_SNP [dm3] 2R_19952021_SNP [dm6]	A	G	2.873e^-4	0.807	DOWNSTREAM CG10822 INTERGENIC
3R	25540289	3R_25540289_SNP [dm3] 3R_29714567_SNP [dm6]	G	A	2.873e^-4	0.807	NON_SYNONYMOUS_CODING Obp99d UPSTREAM CR45569 DOWNSTREAM Dup99B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	14385307	3L_14385307_SNP [dm3] 3L_14392207_SNP [dm6]	A	G	2.874e^-4	0.807	INTERGENIC
2R	14271170	2R_14271170_DEL [dm3] 2R_18383665_DEL [dm6]	ATATATTTA	A	2.891e^-4	0.807	UPSTREAM IM1 & 2 others INTERGENIC
3L	17089123	3L_17089123_DEL [dm3] 3L_17096023_DEL [dm6]	TT	T	2.898e^-4	0.807	INTRON Rbp6
3R	10813892	3R_10813892_SNP [dm3] 3R_14988170_SNP [dm6]	A	G	2.899e^-4	0.807	INTERGENIC
3L	11223228	3L_11223228_DEL [dm3] 3L_11230128_DEL [dm6]	CGATG	C	2.901e^-4	0.807	UTR_3_PRIME CG42671 DOWNSTREAM CG42671
3L	3872313	3L_3872313_SNP [dm3] 3L_3872313_SNP [dm6]	A	G	2.902e^-4	0.807	INTERGENIC
3R	15214267	3R_15214267_SNP [dm3] 3R_19388545_SNP [dm6]	A	G	2.905e^-4	0.807	SYNONYMOUS_CODING CG3734 DOWNSTREAM CR34285 INTRON Ino80	TF binding site mE1_TFBS_sens
3L	13231655	3L_13231655_SNP [dm3] 3L_13238555_SNP [dm6]	A	C	2.916e^-4	0.807	INTRON caps
2R	11330698	2R_11330698_SNP [dm3] 2R_15443193_SNP [dm6]	G	T	2.918e^-4	0.807	INTRON CG43729
3L	11268628	3L_11268628_INS [dm3] 3L_11275528_INS [dm6]	T	TGTTTAGAGTAGAT...	2.920e^-4	0.807	UPSTREAM CR44720 INTERGENIC
X	14845226	X_14845226_SNP [dm3] X_14951193_SNP [dm6]	T	C	2.921e^-4	0.807	UTR_5_PRIME pdgy UPSTREAM pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	11330445	X_11330445_SNP [dm3] X_11436412_SNP [dm6]	A	T	2.924e^-4	0.807	INTRON Evi5
3L	5484014	3L_5484014_SNP [dm3] 3L_5490914_SNP [dm6]	C	T	2.934e^-4	0.807	INTERGENIC
2L	7208454	2L_7208454_SNP [dm3] 2L_7208454_SNP [dm6]	G	T	2.936e^-4	0.807	SYNONYMOUS_CODING CG13784
2L	7616051	2L_7616051_SNP [dm3] 2L_7616051_SNP [dm6]	A	C	2.937e^-4	0.807	INTRON CG6739
3L	1719460	3L_1719460_SNP [dm3] 3L_1719460_SNP [dm6]	C	T	2.948e^-4	0.807	SYNONYMOUS_CODING drpr INTRON drpr	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11576437	2R_11576437_SNP [dm3] 2R_15688932_SNP [dm6]	T	C	2.958e^-4	0.807	NON_SYNONYMOUS_CODING Cep89 UPSTREAM CG30090	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11132561	3L_11132561_SNP [dm3] 3L_11139461_SNP [dm6]	G	C	2.960e^-4	0.807	INTRON CG32082
X	10543785	X_10543785_SNP [dm3] X_10649752_SNP [dm6]	T	C	2.965e^-4	0.807	INTRON X11Lbeta
3R	22246743	3R_22246743_SNP [dm3] 3R_26421021_SNP [dm6]	G	A	2.970e^-4	0.807	INTERGENIC
2L	8448106	2L_8448106_SNP [dm3] 2L_8448106_SNP [dm6]	G	A	2.972e^-4	0.807	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12450024	3L_12450024_SNP [dm3] 3L_12456924_SNP [dm6]	G	A	2.982e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	7052691	X_7052691_SNP [dm3] X_7158658_SNP [dm6]	C	T	2.992e^-4	0.807	INTRON CG9650	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	4416118	3L_4416118_SNP [dm3] 3L_4416118_SNP [dm6]	A	T	2.995e^-4	0.807	INTRON DOR
3L	711113	3L_711113_SNP [dm3] 3L_711113_SNP [dm6]	A	G	2.998e^-4	0.807	SYNONYMOUS_CODING CG13896 UPSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl
2R	14271196	2R_14271196_SNP [dm3] 2R_18383691_SNP [dm6]	G	A	3.001e^-4	0.807	UPSTREAM IM1 & 2 others INTERGENIC
3L	7991476	3L_7991476_SNP [dm3] 3L_7998376_SNP [dm6]	C	T	3.002e^-4	0.807	INTRON nmo	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3R	10212048	3R_10212048_SNP [dm3] 3R_14386326_SNP [dm6]	T	A	3.008e^-4	0.807	INTERGENIC
3R	15798561	3R_15798561_SNP [dm3] 3R_19972839_SNP [dm6]	C	A	3.012e^-4	0.807	UPSTREAM CG31213 INTRON Hs6st
3L	9676626	3L_9676626_SNP [dm3] 3L_9683526_SNP [dm6]	A	T	3.018e^-4	0.807	DOWNSTREAM CG6767 & 1 other INTERGENIC
3R	5959569	3R_5959569_SNP [dm3] 3R_10133847_SNP [dm6]	G	T	3.022e^-4	0.807	INTRON tws	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	14183657	3L_14183657_SNP [dm3] 3L_14190557_SNP [dm6]	C	A	3.023e^-4	0.807	UPSTREAM nan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7948577	3L_7948577_SNP [dm3] 3L_7955477_SNP [dm6]	T	C	3.028e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21876295	3R_21876295_SNP [dm3] 3R_26050573_SNP [dm6]	T	C	3.036e^-4	0.807	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14844213	X_14844213_SNP [dm3] X_14950180_SNP [dm6]	G	A	3.038e^-4	0.807	INTRON pdgy	TF binding site BDTNP1_TFBS_dl
2L	13611124	2L_13611124_SNP [dm3] 2L_13611124_SNP [dm6]	G	A	3.041e^-4	0.807	INTRON kuz
3R	15214249	3R_15214249_SNP [dm3] 3R_19388527_SNP [dm6]	C	T	3.045e^-4	0.807	SYNONYMOUS_CODING CG3734 DOWNSTREAM CR34285 INTRON Ino80	TF binding site mE1_TFBS_sens
2R	9147036	2R_9147036_SNP [dm3] 2R_13259531_SNP [dm6]	A	T	3.052e^-4	0.807	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3R	22289371	3R_22289371_SNP [dm3] 3R_26463649_SNP [dm6]	A	G	3.072e^-4	0.807	INTRON CG5455
3L	17089642	3L_17089642_SNP [dm3] 3L_17096542_SNP [dm6]	G	A	3.081e^-4	0.807	INTRON Rbp6
3L	11685666	3L_11685666_SNP [dm3] 3L_11692566_SNP [dm6]	A	G	3.082e^-4	0.807	SPLICE_SITE_REGION CG14135 SYNONYMOUS_CODING CG14135 UPSTREAM CR43887	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9558101	3R_9558101_SNP [dm3] 3R_13732379_SNP [dm6]	T	A	3.084e^-4	0.807	INTRON CG34383	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12348111	2R_12348111_SNP [dm3] 2R_16460606_SNP [dm6]	A	T	3.084e^-4	0.807	INTERGENIC
3L	1982802	3L_1982802_SNP [dm3] 3L_1982802_SNP [dm6]	G	A	3.086e^-4	0.807	INTERGENIC
3L	22043005	3L_22043005_SNP [dm3] 3L_22049905_SNP [dm6]	A	T	3.091e^-4	0.807	INTRON Oct-TyrR
3L	11598736	3L_11598736_SNP [dm3] 3L_11605636_SNP [dm6]	G	A	3.106e^-4	0.807	UTR_3_PRIME CG6091 DOWNSTREAM CG6091 & 1 other
3L	7561325	3L_7561325_SNP [dm3] 3L_7568225_SNP [dm6]	T	C	3.114e^-4	0.807	SYNONYMOUS_CODING frac
3L	3872417	3L_3872417_SNP [dm3] 3L_3872417_SNP [dm6]	A	T	3.120e^-4	0.807	INTERGENIC
2R	7327684	2R_7327684_SNP [dm3] 2R_11440179_SNP [dm6]	C	T	3.122e^-4	0.807	SPLICE_SITE_REGION CG7777 INTRON CG7777
2L	7786082	2L_7786082_SNP [dm3] 2L_7786082_SNP [dm6]	T	G	3.123e^-4	0.807	DOWNSTREAM CG7149 & 1 other INTERGENIC
3L	22043497	3L_22043497_DEL [dm3] 3L_22050397_DEL [dm6]	CC	C	3.127e^-4	0.807	INTRON Oct-TyrR
3L	22085444	3L_22085444_SNP [dm3] 3L_22092344_SNP [dm6]	C	T	3.127e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	22086131	3L_22086131_SNP [dm3] 3L_22093031_SNP [dm6]	A	G	3.127e^-4	0.807	INTERGENIC
3L	22086458	3L_22086458_SNP [dm3] 3L_22093358_SNP [dm6]	G	A	3.127e^-4	0.807	INTERGENIC
3L	22106630	3L_22106630_SNP [dm3] 3L_22113530_SNP [dm6]	C	G	3.127e^-4	0.807	INTERGENIC
3L	44987	3L_44987_DEL [dm3] 3L_44987_DEL [dm6]	AAATAAATAAAA...	CCAATATT	3.129e^-4	0.807	INTERGENIC
2R	10887990	2R_10887990_SNP [dm3] 2R_15000485_SNP [dm6]	T	A	3.133e^-4	0.807	INTERGENIC
3R	2868309	3R_2868309_SNP [dm3] 3R_7042587_SNP [dm6]	G	A	3.156e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	1564534	3L_1564534_INS [dm3] 3L_1564534_INS [dm6]	A	AA	3.158e^-4	0.807	UPSTREAM CG12003 INTRON CG7879
3L	7480667	3L_7480667_SNP [dm3] 3L_7487567_SNP [dm6]	A	G	3.160e^-4	0.807	SYNONYMOUS_CODING mthl6
X	6898563	X_6898563_SNP [dm3] X_7004530_SNP [dm6]	T	C	3.162e^-4	0.807	DOWNSTREAM Inx2 INTRON Inx7
3L	4442973	3L_4442973_SNP [dm3] 3L_4442973_SNP [dm6]	A	G	3.162e^-4	0.807	INTERGENIC
3R	26485873	3R_26485873_SNP [dm3] 3R_30660151_SNP [dm6]	G	A	3.163e^-4	0.807	INTERGENIC
3R	10811113	3R_10811113_SNP [dm3] 3R_14985391_SNP [dm6]	G	A	3.165e^-4	0.807	INTERGENIC
2L	9934280	2L_9934280_SNP [dm3] 2L_9934280_SNP [dm6]	A	T	3.168e^-4	0.807	DOWNSTREAM CG31712 INTERGENIC
3L	9515287	3L_9515287_SNP [dm3] 3L_9522187_SNP [dm6]	T	C	3.176e^-4	0.807	INTRON CG33700
3L	4619367	3L_4619367_SNP [dm3] 3L_4619367_SNP [dm6]	G	A	3.180e^-4	0.807	INTRON Src64B
3L	22103648	3L_22103648_SNP [dm3] 3L_22110548_SNP [dm6]	T	C	3.181e^-4	0.807	INTERGENIC
3L	16209787	3L_16209787_SNP [dm3] 3L_16216687_SNP [dm6]	G	A	3.183e^-4	0.807	INTRON CG13073
3L	22052651	3L_22052651_SNP [dm3] 3L_22059551_SNP [dm6]	T	C	3.185e^-4	0.807	INTRON Oct-TyrR
3L	23399548	3L_23399548_SNP [dm3] 3L_23406448_SNP [dm6]	G	C	3.188e^-4	0.807	INTERGENIC	transposable element FlyBase
X	5120460	X_5120460_SNP [dm3] X_5226427_SNP [dm6]	A	G	3.192e^-4	0.807	INTRON CG15465 & 1 other
3L	4373703	3L_4373703_SNP [dm3] 3L_4373703_SNP [dm6]	T	A	3.195e^-4	0.807	INTRON DopEcR
3L	7948730	3L_7948730_SNP [dm3] 3L_7955630_SNP [dm6]	T	C	3.199e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13751874	3L_13751874_SNP [dm3] 3L_13758774_SNP [dm6]	C	A	3.203e^-4	0.807	INTRON bru-3
2R	17727818	2R_17727818_SNP [dm3] 2R_21840313_SNP [dm6]	A	T	3.206e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7479963	3L_7479963_SNP [dm3] 3L_7486863_SNP [dm6]	G	T	3.207e^-4	0.807	SYNONYMOUS_CODING mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14844277	X_14844277_SNP [dm3] X_14950244_SNP [dm6]	C	G	3.213e^-4	0.807	INTRON pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	17727974	2R_17727974_SNP [dm3] 2R_21840469_SNP [dm6]	A	G	3.217e^-4	0.807	INTERGENIC
3L	15203160	3L_15203160_SNP [dm3] 3L_15210060_SNP [dm6]	G	A	3.223e^-4	0.807	INTERGENIC
3L	7309076	3L_7309076_SNP [dm3] 3L_7315976_SNP [dm6]	T	C	3.233e^-4	0.807	INTERGENIC
3L	7309077	3L_7309077_SNP [dm3] 3L_7315977_SNP [dm6]	T	C	3.233e^-4	0.807	INTERGENIC
2R	14271099	2R_14271099_SNP [dm3] 2R_18383594_SNP [dm6]	G	A	3.234e^-4	0.807	UPSTREAM IM1 & 2 others INTERGENIC
X	9849167	X_9849167_DEL [dm3] X_9955134_DEL [dm6]	TATTTAACTTCATATGCAGT...	T	3.237e^-4	0.807	INTERGENIC
2R	7961237	2R_7961237_SNP [dm3] 2R_12073732_SNP [dm6]	G	A	3.246e^-4	0.807	INTRON CG8888
3L	12084593	3L_12084593_SNP [dm3] 3L_12091493_SNP [dm6]	A	C	3.247e^-4	0.807	INTERGENIC
3L	7090861	3L_7090861_SNP [dm3] 3L_7097761_SNP [dm6]	A	C	3.251e^-4	0.807	INTRON form3
2L	586272	2L_586272_DEL [dm3] 2L_586272_DEL [dm6]	GCAACAG	G	3.252e^-4	0.807	INTRON Gsc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	25617624	3R_25617624_SNP [dm3] 3R_29791902_SNP [dm6]	C	T	3.258e^-4	0.807	SYNONYMOUS_CODING kay	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	26480437	3R_26480437_SNP [dm3] 3R_30654715_SNP [dm6]	A	C	3.274e^-4	0.807	INTERGENIC
3L	1567838	3L_1567838_SNP [dm3] 3L_1567838_SNP [dm6]	T	C	3.281e^-4	0.807	DOWNSTREAM CG12003 INTRON CG7879	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2R	19513609	2R_19513609_SNP [dm3] 2R_23626086_SNP [dm6]	A	G	3.285e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11575711	2R_11575711_SNP [dm3] 2R_15688206_SNP [dm6]	G	T	3.286e^-4	0.807	NON_SYNONYMOUS_CODING Cep89 SPLICE_SITE_REGION Cep89 DOWNSTREAM Ranbp11	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	11103011	X_11103011_SNP [dm3] X_11208978_SNP [dm6]	A	T	3.291e^-4	0.807	INTERGENIC
3L	8518986	3L_8518986_SNP [dm3] 3L_8525886_SNP [dm6]	A	C	3.294e^-4	0.807	INTRON foi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	15281202	2L_15281202_DEL [dm3] 2L_15281202_DEL [dm6]	CC	T	3.295e^-4	0.807	DOWNSTREAM CR45349 INTERGENIC
3L	22112300	3L_22112300_INS [dm3] 3L_22119200_INS [dm6]	C	GCCCCATCTG	3.295e^-4	0.807	INTERGENIC
2L	7398079	2L_7398079_SNP [dm3] 2L_7398079_SNP [dm6]	A	T	3.295e^-4	0.807	INTRON CG5160	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	15021917	X_15021917_DEL [dm3] X_15127884_DEL [dm6]	TT	T	3.298e^-4	0.807	INTRON drd
2R	6795340	2R_6795340_SNP [dm3] 2R_10907835_SNP [dm6]	A	G	3.302e^-4	0.807	INTERGENIC
3L	7257568	3L_7257568_SNP [dm3] 3L_7264468_SNP [dm6]	G	A	3.303e^-4	0.807	UPSTREAM CG14830 INTERGENIC
X	13412975	X_13412975_SNP [dm3] X_13518942_SNP [dm6]	A	T	3.308e^-4	0.807	UTR_3_PRIME Neto INTRON Neto
3R	21876370	3R_21876370_SNP [dm3] 3R_26050648_SNP [dm6]	T	G	3.313e^-4	0.807	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6100247	3L_6100247_SNP [dm3] 3L_6107147_SNP [dm6]	C	T	3.313e^-4	0.807	INTRON Ets65A	TF binding site mE1_TFBS_cad
3L	4373660	3L_4373660_SNP [dm3] 3L_4373660_SNP [dm6]	T	C	3.321e^-4	0.807	INTRON DopEcR
3R	10212042	3R_10212042_SNP [dm3] 3R_14386320_SNP [dm6]	C	A	3.323e^-4	0.807	INTERGENIC
3L	103773	3L_103773_SNP [dm3] 3L_103773_SNP [dm6]	T	A	3.327e^-4	0.807	INTERGENIC
2R	6962276	2R_6962276_SNP [dm3] 2R_11074771_SNP [dm6]	A	G	3.329e^-4	0.807	INTRON luna
3R	1264892	3R_1264892_SNP [dm3] 3R_5439170_SNP [dm6]	A	G	3.337e^-4	0.807	INTRON CG14669	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3L	781299	3L_781299_SNP [dm3] 3L_781299_SNP [dm6]	A	T	3.357e^-4	0.807	INTERGENIC
2R	19899382	2R_19899382_SNP [dm3] 2R_24011859_SNP [dm6]	G	T	3.371e^-4	0.807	INTRON Unc-89	TF binding site mE1_TFBS_chinmo
3L	22065675	3L_22065675_SNP [dm3] 3L_22072575_SNP [dm6]	A	T	3.375e^-4	0.807	UPSTREAM CG7139 DOWNSTREAM CG7133 EXON CR43995	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	27194484	3R_27194484_SNP [dm3] 3R_31368762_SNP [dm6]	A	G	3.378e^-4	0.807	INTRON CG34347
3R	18697862	3R_18697862_SNP [dm3] 3R_22872140_SNP [dm6]	T	C	3.382e^-4	0.807	INTERGENIC
3R	25570840	3R_25570840_SNP [dm3] 3R_29745118_SNP [dm6]	C	T	3.385e^-4	0.807	UPSTREAM IntS11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8296345	X_8296345_SNP [dm3] X_8402312_SNP [dm6]	A	G	3.385e^-4	0.807	SYNONYMOUS_CODING CG10555	TF binding site mE1_TFBS_chinmo
2L	1321709	2L_1321709_SNP [dm3] 2L_1321709_SNP [dm6]	G	A	3.391e^-4	0.807	INTERGENIC
2L	7100227	2L_7100227_DEL [dm3] 2L_7100227_DEL [dm6]	AGA	A	3.401e^-4	0.807	INTRON Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14555445	3L_14555445_SNP [dm3] 3L_14562345_SNP [dm6]	A	T	3.404e^-4	0.807	INTRON CG34039	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
3L	14385314	3L_14385314_DEL [dm3] 3L_14392214_DEL [dm6]	ATAAAAA	A	3.412e^-4	0.807	INTERGENIC
3R	19279698	3R_19279698_SNP [dm3] 3R_23453976_SNP [dm6]	A	C	3.413e^-4	0.807	INTRON CG4374
2R	9332145	2R_9332145_SNP [dm3] 2R_13444640_SNP [dm6]	A	G	3.418e^-4	0.807	SYNONYMOUS_CODING cnn	TF binding site mE1_TFBS_HSA
3L	14183665	3L_14183665_SNP [dm3] 3L_14190565_SNP [dm6]	T	C	3.418e^-4	0.807	UPSTREAM nan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
3L	22044066	3L_22044066_SNP [dm3] 3L_22050966_SNP [dm6]	T	A	3.420e^-4	0.807	INTRON Oct-TyrR
3L	14813948	3L_14813948_SNP [dm3] 3L_14820848_SNP [dm6]	G	A	3.420e^-4	0.807	INTRON CG17839
2R	16864990	2R_16864990_SNP [dm3] 2R_20977485_SNP [dm6]	G	T	3.426e^-4	0.807	UTR_3_PRIME CG9344 DOWNSTREAM CG15650 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	10427906	3R_10427906_SNP [dm3] 3R_14602184_SNP [dm6]	A	G	3.428e^-4	0.807	UPSTREAM stumps INTRON stumps	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18697864	3R_18697864_DEL [dm3] 3R_22872142_DEL [dm6]	CA	C	3.428e^-4	0.807	INTERGENIC
3L	1103387	3L_1103387_SNP [dm3] 3L_1103387_SNP [dm6]	C	T	3.431e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	26320304	3R_26320304_SNP [dm3] 3R_30494582_SNP [dm6]	A	T	3.436e^-4	0.807	INTRON PH4alphaMP
2R	10417946	2R_10417946_DEL [dm3] 2R_14530441_DEL [dm6]	TTTAATTTTACT...	T	3.436e^-4	0.807	INTRON ttv
3L	12584038	3L_12584038_SNP [dm3] 3L_12590938_SNP [dm6]	G	A	3.439e^-4	0.807	INTRON ara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15292420	2L_15292420_SNP [dm3] 2L_15292420_SNP [dm6]	T	A	3.441e^-4	0.807	UPSTREAM ms_2_35Ci & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	3950795	X_3950795_SNP [dm3] X_4056762_SNP [dm6]	C	A	3.443e^-4	0.807	INTERGENIC
X	21192658	X_21192658_INS [dm3] X_21321631_INS [dm6]	G	GAG	3.443e^-4	0.807	SPLICE_SITE_REGION Dd INTRON Dd	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	3966070	3R_3966070_SNP [dm3] 3R_8140348_SNP [dm6]	T	A	3.450e^-4	0.807	UPSTREAM tRNA:N5:84F & 2 others DOWNSTREAM tRNA:R2:84Fc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	26669557	3R_26669557_SNP [dm3] 3R_30843835_SNP [dm6]	G	C	3.450e^-4	0.807	INTERGENIC
3R	26195343	3R_26195343_SNP [dm3] 3R_30369621_SNP [dm6]	T	A	3.452e^-4	0.807	UTR_3_PRIME hdc
X	16168454	X_16168454_SNP [dm3] X_16274421_SNP [dm6]	G	A	3.472e^-4	0.807	SYNONYMOUS_CODING kat80 DOWNSTREAM Mfe2
3R	23935303	3R_23935303_SNP [dm3] 3R_28109581_SNP [dm6]	C	A	3.476e^-4	0.807	INTERGENIC
2L	16376688	2L_16376688_SNP [dm3] 2L_16376688_SNP [dm6]	A	T	3.484e^-4	0.807	INTERGENIC
3R	15131423	3R_15131423_SNP [dm3] 3R_19305701_SNP [dm6]	G	A	3.494e^-4	0.807	SYNONYMOUS_CODING Dl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	22099935	3L_22099935_SNP [dm3] 3L_22106835_SNP [dm6]	G	A	3.499e^-4	0.807	INTERGENIC
2L	6090262	2L_6090262_SNP [dm3] 2L_6090262_SNP [dm6]	T	C	3.505e^-4	0.807	INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3L	4443807	3L_4443807_SNP [dm3] 3L_4443807_SNP [dm6]	A	G	3.509e^-4	0.807	INTERGENIC
3R	20919658	3R_20919658_SNP [dm3] 3R_25093936_SNP [dm6]	C	A	3.517e^-4	0.807	INTERGENIC	silencer mE1_HDAC_PRE
2R	14184891	2R_14184891_SNP [dm3] 2R_18297386_SNP [dm6]	A	C	3.519e^-4	0.807	UPSTREAM CG18539 DOWNSTREAM CG18537 INTRON sbb & 1 other
2L	10560955	2L_10560955_SNP [dm3] 2L_10560955_SNP [dm6]	A	G	3.519e^-4	0.807	INTRON Trim9
2L	698684	2L_698684_DEL [dm3] 2L_698684_DEL [dm6]	AA	A	3.524e^-4	0.807	INTRON ds
X	10116336	X_10116336_SNP [dm3] X_10222303_SNP [dm6]	G	T	3.525e^-4	0.807	UPSTREAM CG34408 INTRON CG34408
2R	9332143	2R_9332143_SNP [dm3] 2R_13444638_SNP [dm6]	C	T	3.529e^-4	0.807	SYNONYMOUS_CODING cnn	TF binding site mE1_TFBS_HSA
3R	2867868	3R_2867868_SNP [dm3] 3R_7042146_SNP [dm6]	G	A	3.532e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13682812	3R_13682812_SNP [dm3] 3R_17857090_SNP [dm6]	G	C	3.532e^-4	0.807	INTRON tinc
2L	7213853	2L_7213853_SNP [dm3] 2L_7213853_SNP [dm6]	C	G	3.536e^-4	0.807	INTRON CG13784	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	22100989	3L_22100989_DEL [dm3] 3L_22107889_DEL [dm6]	AC	A	3.537e^-4	0.807	INTERGENIC
3L	22100995	3L_22100995_DEL [dm3] 3L_22107895_DEL [dm6]	AAGGAGC	A	3.537e^-4	0.807	INTERGENIC
2R	7961258	2R_7961258_SNP [dm3] 2R_12073753_SNP [dm6]	A	G	3.541e^-4	0.807	INTRON CG8888
2L	17880567	2L_17880567_SNP [dm3] 2L_17880567_SNP [dm6]	T	C	3.547e^-4	0.807	INTERGENIC
3R	24361728	3R_24361728_SNP [dm3] 3R_28536006_SNP [dm6]	T	C	3.554e^-4	0.807	INTRON Ppn
3R	3966140	3R_3966140_SNP [dm3] 3R_8140418_SNP [dm6]	A	C	3.558e^-4	0.807	UPSTREAM tRNA:N5:84F & 2 others DOWNSTREAM tRNA:R2:84Fc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	26128419	3R_26128419_SNP [dm3] 3R_30302697_SNP [dm6]	T	G	3.567e^-4	0.807	INTRON hdc
3L	20679773	3L_20679773_SNP [dm3] 3L_20686673_SNP [dm6]	A	T	3.570e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	2171809	3L_2171809_SNP [dm3] 3L_2171809_SNP [dm6]	T	A	3.575e^-4	0.807	UPSTREAM CG5704 EXON CR15821
3L	17672226	3L_17672226_SNP [dm3] 3L_17679126_SNP [dm6]	C	A	3.576e^-4	0.807	INTRON CG34251
3L	9716744	3L_9716744_SNP [dm3] 3L_9723644_SNP [dm6]	C	T	3.579e^-4	0.807	SYNONYMOUS_CODING defl UPSTREAM nbs	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	9157186	2L_9157186_SNP [dm3] 2L_9157186_SNP [dm6]	C	T	3.584e^-4	0.807	INTRON CG32982
2R	10417824	2R_10417824_SNP [dm3] 2R_14530319_SNP [dm6]	A	G	3.585e^-4	0.807	INTRON ttv
3L	1718570	3L_1718570_INS [dm3] 3L_1718570_INS [dm6]	A	ACTAT	3.586e^-4	0.807	INTRON drpr	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	372959	2L_372959_SNP [dm3] 2L_372959_SNP [dm6]	G	T	3.595e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	19680807	2L_19680807_SNP [dm3] 2L_19680807_SNP [dm6]	G	T	3.595e^-4	0.807	INTRON Lar	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	19680861	2L_19680861_SNP [dm3] 2L_19680861_SNP [dm6]	A	G	3.595e^-4	0.807	INTRON Lar	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	9726588	3L_9726588_SNP [dm3] 3L_9733488_SNP [dm6]	G	A	3.597e^-4	0.807	DOWNSTREAM mir-4986 & 1 other INTRON CG6749
3L	4420319	3L_4420319_SNP [dm3] 3L_4420319_SNP [dm6]	G	A	3.621e^-4	0.807	UTR_3_PRIME DOR DOWNSTREAM DOR
X	21458688	X_21458688_SNP [dm3] X_21587661_SNP [dm6]	A	G	3.631e^-4	0.807	INTERGENIC	transposable element FlyBase
2R	19881149	2R_19881149_SNP [dm3] 2R_23993626_SNP [dm6]	C	T	3.633e^-4	0.807	UPSTREAM mir-1009 INTRON CG3860
3L	1981625	3L_1981625_SNP [dm3] 3L_1981625_SNP [dm6]	A	T	3.633e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10343861	2R_10343861_SNP [dm3] 2R_14456356_SNP [dm6]	T	G	3.640e^-4	0.807	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8447795	2L_8447795_SNP [dm3] 2L_8447795_SNP [dm6]	C	T	3.643e^-4	0.807	SYNONYMOUS_CODING U26 UTR_3_PRIME U26
3R	5129982	3R_5129982_SNP [dm3] 3R_9304260_SNP [dm6]	C	G	3.651e^-4	0.807	INTRON CG8861
2R	18542312	2R_18542312_SNP [dm3] 2R_22654807_SNP [dm6]	C	G	3.652e^-4	0.807	UTR_3_PRIME CG30196 UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other	TF binding site mE1_TFBS_cad
3R	21849721	3R_21849721_SNP [dm3] 3R_26023999_SNP [dm6]	G	A	3.656e^-4	0.807	UTR_3_PRIME E_spl_m4-BFM DOWNSTREAM E_spl_m3-HLH	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11322549	3R_11322549_SNP [dm3] 3R_15496827_SNP [dm6]	T	C	3.658e^-4	0.807	INTERGENIC
3L	13231662	3L_13231662_SNP [dm3] 3L_13238562_SNP [dm6]	C	A	3.668e^-4	0.807	INTRON caps
X	5908639	X_5908639_INS [dm3] X_6014606_INS [dm6]	A	ATACCGGA	3.672e^-4	0.807	DOWNSTREAM CR44499 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12815785	3L_12815785_SNP [dm3] 3L_12822685_SNP [dm6]	C	T	3.675e^-4	0.807	INTRON CG42588
2L	7398022	2L_7398022_DEL [dm3] 2L_7398022_DEL [dm6]	CC	C	3.678e^-4	0.807	INTRON CG5160	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	6744436	X_6744436_SNP [dm3] X_6850403_SNP [dm6]	G	A	3.679e^-4	0.807	SYNONYMOUS_CODING CG4558 UPSTREAM Cht11	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7616240	2L_7616240_SNP [dm3] 2L_7616240_SNP [dm6]	A	C	3.686e^-4	0.807	NON_SYNONYMOUS_CODING CG6739 UTR_3_PRIME CG6739
2R	5980518	2R_5980518_SNP [dm3] 2R_10093013_SNP [dm6]	A	G	3.687e^-4	0.807	INTRON CG2269
2R	9324976	2R_9324976_SNP [dm3] 2R_13437471_SNP [dm6]	C	A	3.691e^-4	0.807	START_GAINED CG42321 UTR_5_PRIME CG42321 UPSTREAM tRNA:CR30509 INTRON CG42321	TF binding site BDTNP1_TFBS_dl
2L	10699384	2L_10699384_SNP [dm3] 2L_10699384_SNP [dm6]	G	A	3.694e^-4	0.807	DOWNSTREAM Lip1 INTERGENIC
3L	10279902	3L_10279902_SNP [dm3] 3L_10286802_SNP [dm6]	A	G	3.698e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	441713	3L_441713_SNP [dm3] 3L_441713_SNP [dm6]	G	A	3.698e^-4	0.807	UPSTREAM klar DOWNSTREAM klar INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Trl
3R	4268919	3R_4268919_SNP [dm3] 3R_8443197_SNP [dm6]	A	G	3.699e^-4	0.807	INTRON CG45263	TF binding site mE1_TFBS_cad
2L	7786130	2L_7786130_SNP [dm3] 2L_7786130_SNP [dm6]	T	G	3.701e^-4	0.807	DOWNSTREAM CG7149 & 1 other INTERGENIC
2L	8954684	2L_8954684_SNP [dm3] 2L_8954684_SNP [dm6]	A	G	3.703e^-4	0.807	NON_SYNONYMOUS_CODING CG31886	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	4556778	3L_4556778_SNP [dm3] 3L_4556778_SNP [dm6]	A	C	3.703e^-4	0.807	UPSTREAM CG42540 INTRON CG42540
3L	711025	3L_711025_SNP [dm3] 3L_711025_SNP [dm6]	T	G	3.712e^-4	0.807	SYNONYMOUS_CODING CG13896 UPSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	9664397	3R_9664397_SNP [dm3] 3R_13838675_SNP [dm6]	G	A	3.714e^-4	0.807	UTR_3_PRIME CG31495 UPSTREAM Nsf2	TF binding site BDTNP1_TFBS_dl
3R	19325039	3R_19325039_SNP [dm3] 3R_23499317_SNP [dm6]	T	C	3.715e^-4	0.807	INTERGENIC
3L	10264888	3L_10264888_SNP [dm3] 3L_10271788_SNP [dm6]	C	A	3.716e^-4	0.807	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	443138	3L_443138_SNP [dm3] 3L_443138_SNP [dm6]	C	T	3.725e^-4	0.807	NON_SYNONYMOUS_CODING klar INTRON klar	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	23277657	3L_23277657_SNP [dm3] 3L_23284557_SNP [dm6]	C	T	3.725e^-4	0.807	UTR_3_PRIME nAChRalpha4 DOWNSTREAM nAChRalpha4
2R	3260001	2R_3260001_SNP [dm3] 2R_7372496_SNP [dm6]	C	A	3.726e^-4	0.807	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	781267	3L_781267_SNP [dm3] 3L_781267_SNP [dm6]	G	A	3.730e^-4	0.807	INTERGENIC
2R	8371767	2R_8371767_SNP [dm3] 2R_12484262_SNP [dm6]	T	A	3.733e^-4	0.807	INTRON Dh44-R2
2L	8135399	2L_8135399_SNP [dm3] 2L_8135399_SNP [dm6]	A	G	3.747e^-4	0.807	SYNONYMOUS_CODING CG8552	TF binding site mE1_TFBS_cad
2R	11951990	2R_11951990_SNP [dm3] 2R_16064485_SNP [dm6]	C	A	3.762e^-4	0.807	DOWNSTREAM mir-137 INTERGENIC
3R	17942119	3R_17942119_SNP [dm3] 3R_22116397_SNP [dm6]	G	C	3.767e^-4	0.807	NON_SYNONYMOUS_CODING Ir94b
X	6453443	X_6453443_SNP [dm3] X_6559410_SNP [dm6]	C	T	3.772e^-4	0.807	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_inv
3R	20321310	3R_20321310_SNP [dm3] 3R_24495588_SNP [dm6]	C	T	3.772e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_cad
3L	21138699	3L_21138699_INS [dm3] 3L_21145599_INS [dm6]	A	TG	3.777e^-4	0.807	INTRON Ac78C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
3L	13300662	3L_13300662_SNP [dm3] 3L_13307562_SNP [dm6]	G	C	3.781e^-4	0.807	INTERGENIC
3L	13300663	3L_13300663_SNP [dm3] 3L_13307563_SNP [dm6]	C	A	3.781e^-4	0.807	INTERGENIC
3L	20959207	3L_20959207_SNP [dm3] 3L_20966107_SNP [dm6]	T	C	3.784e^-4	0.807	NON_SYNONYMOUS_CODING CG12983 DOWNSTREAM CG33287 INTRON CG12983
2R	8667377	2R_8667377_SNP [dm3] 2R_12779872_SNP [dm6]	A	T	3.786e^-4	0.807	UPSTREAM sca DOWNSTREAM CR45266 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25971695	3R_25971695_SNP [dm3] 3R_30145973_SNP [dm6]	T	G	3.786e^-4	0.807	INTRON AdoR
X	21458777	X_21458777_SNP [dm3] X_21587750_SNP [dm6]	C	T	3.792e^-4	0.807	INTERGENIC
3R	26965797	3R_26965797_SNP [dm3] 3R_31140075_SNP [dm6]	A	G	3.793e^-4	0.807	INTRON Gycbeta100B
3R	7076914	3R_7076914_SNP [dm3] 3R_11251192_SNP [dm6]	T	A	3.807e^-4	0.807	INTRON CR43283 EXON CR43283
2R	8134266	2R_8134266_SNP [dm3] 2R_12246761_SNP [dm6]	C	T	3.811e^-4	0.807	EXON CR44315
X	9007178	X_9007178_SNP [dm3] X_9113145_SNP [dm6]	T	A	3.812e^-4	0.807	INTRON AP-1gamma
X	14844235	X_14844235_SNP [dm3] X_14950202_SNP [dm6]	T	G	3.813e^-4	0.807	INTRON pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	1319066	2L_1319066_SNP [dm3] 2L_1319066_SNP [dm6]	A	C	3.814e^-4	0.807	INTERGENIC
X	14844331	X_14844331_SNP [dm3] X_14950298_SNP [dm6]	A	C	3.827e^-4	0.807	INTRON pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11723610	2R_11723610_SNP [dm3] 2R_15836105_SNP [dm6]	T	C	3.832e^-4	0.807	INTRON tun	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3R	10437715	3R_10437715_SNP [dm3] 3R_14611993_SNP [dm6]	G	C	3.833e^-4	0.807	INTRON CG14853
2L	14021644	2L_14021644_SNP [dm3] 2L_14021644_SNP [dm6]	G	A	3.834e^-4	0.807	EXON CR45352	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	4934321	3R_4934321_SNP [dm3] 3R_9108599_SNP [dm6]	G	A	3.841e^-4	0.807	INTRON pum
3L	2994224	3L_2994224_SNP [dm3] 3L_2994224_SNP [dm6]	G	A	3.844e^-4	0.807	UPSTREAM CG2113 INTERGENIC
3R	25571996	3R_25571996_SNP [dm3] 3R_29746274_SNP [dm6]	G	C	3.847e^-4	0.807	SYNONYMOUS_CODING IntS11	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14658156	3L_14658156_SNP [dm3] 3L_14665056_SNP [dm6]	C	T	3.848e^-4	0.807	SYNONYMOUS_CODING dlp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11582501	2R_11582501_SNP [dm3] 2R_15694996_SNP [dm6]	G	C	3.849e^-4	0.807	SYNONYMOUS_CODING CG33460 UPSTREAM CG33461
2L	21065012	2L_21065012_SNP [dm3] 2L_21065012_SNP [dm6]	T	A	3.856e^-4	0.807	INTRON CG9265
2L	16376690	2L_16376690_DEL [dm3] 2L_16376690_DEL [dm6]	AATATATAT	A	3.860e^-4	0.807	INTERGENIC
X	21458803	X_21458803_SNP [dm3] X_21587776_SNP [dm6]	T	C	3.863e^-4	0.807	INTERGENIC
2R	10076037	2R_10076037_SNP [dm3] 2R_14188532_SNP [dm6]	C	A	3.864e^-4	0.807	NON_SYNONYMOUS_CODING CG30069
2R	4527854	2R_4527854_SNP [dm3] 2R_8640349_SNP [dm6]	T	A	3.864e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_inv
3L	5492940	3L_5492940_SNP [dm3] 3L_5499840_SNP [dm6]	G	T	3.870e^-4	0.807	UPSTREAM blanks EXON CR44518	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1505454	3L_1505454_SNP [dm3] 3L_1505454_SNP [dm6]	G	T	3.901e^-4	0.807	NON_SYNONYMOUS_CODING cue INTRON Psa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1706292	3L_1706292_SNP [dm3] 3L_1706292_SNP [dm6]	C	G	3.909e^-4	0.807	INTRON CG7991	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	10436192	3R_10436192_SNP [dm3] 3R_14610470_SNP [dm6]	G	T	3.913e^-4	0.807	INTRON CG14853
3R	26671686	3R_26671686_SNP [dm3] 3R_30845964_SNP [dm6]	T	A	3.924e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	14843656	X_14843656_SNP [dm3] X_14949623_SNP [dm6]	A	T	3.926e^-4	0.807	INTRON pdgy
3L	22030324	3L_22030324_SNP [dm3] 3L_22037224_SNP [dm6]	T	C	3.936e^-4	0.807	INTRON Oct-TyrR
3R	15813214	3R_15813214_INS [dm3] 3R_19987492_INS [dm6]	T	TTT	3.942e^-4	0.807	INTRON Hs6st
3R	24336615	3R_24336615_SNP [dm3] 3R_28510893_SNP [dm6]	C	T	3.950e^-4	0.807	SYNONYMOUS_CODING Dhc98D
X	12861168	X_12861168_SNP [dm3] X_12967135_SNP [dm6]	A	T	3.958e^-4	0.807	UPSTREAM Mur11Da INTERGENIC
3R	13600672	3R_13600672_SNP [dm3] 3R_17774950_SNP [dm6]	C	T	3.959e^-4	0.807	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25570307	3R_25570307_SNP [dm3] 3R_29744585_SNP [dm6]	A	G	3.960e^-4	0.807	SYNONYMOUS_CODING CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1319213	2L_1319213_INS [dm3] 2L_1319213_INS [dm6]	G	GCAG	3.972e^-4	0.807	INTERGENIC
3L	9515098	3L_9515098_SNP [dm3] 3L_9521998_SNP [dm6]	A	G	3.973e^-4	0.807	INTRON CG33700
3R	26320320	3R_26320320_SNP [dm3] 3R_30494598_SNP [dm6]	C	T	3.973e^-4	0.807	INTRON PH4alphaMP
2L	7201933	2L_7201933_SNP [dm3] 2L_7201933_SNP [dm6]	T	A	3.977e^-4	0.807	INTRON CG4502
2R	18540270	2R_18540270_SNP [dm3] 2R_22652765_SNP [dm6]	G	C	3.990e^-4	0.807	SYNONYMOUS_CODING Cyp6d2 UTR_3_PRIME nsr DOWNSTREAM nsr
3L	22029742	3L_22029742_SNP [dm3] 3L_22036642_SNP [dm6]	C	T	3.991e^-4	0.807	INTRON Oct-TyrR
X	6453439	X_6453439_SNP [dm3] X_6559406_SNP [dm6]	A	C	3.992e^-4	0.807	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_inv
3L	10519331	3L_10519331_SNP [dm3] 3L_10526231_SNP [dm6]	A	C	3.994e^-4	0.807	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1174371	3L_1174371_SNP [dm3] 3L_1174371_SNP [dm6]	G	T	3.999e^-4	0.807	NON_SYNONYMOUS_CODING bab2	TF binding site mE1_TFBS_cad
3L	22028560	3L_22028560_SNP [dm3] 3L_22035460_SNP [dm6]	C	A	4.005e^-4	0.807	UTR_5_PRIME Oct-TyrR
3L	22037769	3L_22037769_SNP [dm3] 3L_22044669_SNP [dm6]	A	G	4.005e^-4	0.807	INTRON Oct-TyrR
3L	22037770	3L_22037770_SNP [dm3] 3L_22044670_SNP [dm6]	G	A	4.005e^-4	0.807	INTRON Oct-TyrR
3L	22048386	3L_22048386_SNP [dm3] 3L_22055286_SNP [dm6]	C	A	4.005e^-4	0.807	INTRON Oct-TyrR	TF binding site BDTNP1_TFBS_da
3L	22049031	3L_22049031_SNP [dm3] 3L_22055931_SNP [dm6]	T	A	4.005e^-4	0.807	INTRON Oct-TyrR
3L	22052404	3L_22052404_SNP [dm3] 3L_22059304_SNP [dm6]	G	T	4.005e^-4	0.807	INTRON Oct-TyrR
3L	22053256	3L_22053256_SNP [dm3] 3L_22060156_SNP [dm6]	C	T	4.005e^-4	0.807	INTRON Oct-TyrR
3L	22054406	3L_22054406_SNP [dm3] 3L_22061306_SNP [dm6]	G	A	4.005e^-4	0.807	NON_SYNONYMOUS_CODING Oct-TyrR
2R	18369132	2R_18369132_SNP [dm3] 2R_22481627_SNP [dm6]	C	T	4.022e^-4	0.807	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19880283	2L_19880283_SNP [dm3] 2L_19880283_SNP [dm6]	C	A	4.037e^-4	0.807	INTRON sick
3R	10434525	3R_10434525_SNP [dm3] 3R_14608803_SNP [dm6]	T	C	4.038e^-4	0.807	UPSTREAM CG14853 DOWNSTREAM stumps INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25125660	3R_25125660_SNP [dm3] 3R_29299938_SNP [dm6]	G	A	4.039e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	1740510	3L_1740510_SNP [dm3] 3L_1740510_SNP [dm6]	C	A	4.041e^-4	0.807	INTRON Gk
3R	10437640	3R_10437640_SNP [dm3] 3R_14611918_SNP [dm6]	A	T	4.045e^-4	0.807	INTRON CG14853
3L	41504	3L_41504_SNP [dm3] 3L_41504_SNP [dm6]	A	G	4.055e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1705218	3L_1705218_SNP [dm3] 3L_1705218_SNP [dm6]	A	G	4.056e^-4	0.807	INTRON CG7991
2R	3265898	2R_3265898_SNP [dm3] 2R_7378393_SNP [dm6]	C	A	4.067e^-4	0.807	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
3L	22054911	3L_22054911_SNP [dm3] 3L_22061811_SNP [dm6]	C	T	4.070e^-4	0.807	INTRON Oct-TyrR
2R	4526744	2R_4526744_SNP [dm3] 2R_8639239_SNP [dm6]	C	A	4.079e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	3265694	2R_3265694_SNP [dm3] 2R_7378189_SNP [dm6]	C	T	4.081e^-4	0.807	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
2R	7148303	2R_7148303_SNP [dm3] 2R_11260798_SNP [dm6]	C	G	4.085e^-4	0.807	UPSTREAM Cpr47Ec DOWNSTREAM Cpr47Ed INTERGENIC
X	5908701	X_5908701_SNP [dm3] X_6014668_SNP [dm6]	T	C	4.087e^-4	0.807	DOWNSTREAM CR44499 INTERGENIC
2L	3380210	2L_3380210_SNP [dm3] 2L_3380210_SNP [dm6]	C	G	4.087e^-4	0.807	INTERGENIC
2L	8582176	2L_8582176_SNP [dm3] 2L_8582176_SNP [dm6]	A	C	4.088e^-4	0.807	INTRON Sema-1a
2R	18542565	2R_18542565_SNP [dm3] 2R_22655060_SNP [dm6]	G	A	4.094e^-4	0.807	SYNONYMOUS_CODING CG30196 UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	16054331	X_16054331_SNP [dm3] X_16160298_SNP [dm6]	G	C	4.096e^-4	0.807	INTERGENIC
2L	4147030	2L_4147030_SNP [dm3] 2L_4147030_SNP [dm6]	C	T	4.105e^-4	0.807	INTERGENIC
X	6643082	X_6643082_INS [dm3] X_6749049_INS [dm6]	A	AACAGAGA	4.115e^-4	0.807	INTRON CG14439
2R	12631791	2R_12631791_SNP [dm3] 2R_16744286_SNP [dm6]	G	A	4.115e^-4	0.807	DOWNSTREAM Sfp53D & 1 other INTERGENIC
2R	19504913	2R_19504913_SNP [dm3] 2R_23617390_SNP [dm6]	G	A	4.116e^-4	0.807	UPSTREAM CG17664 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	109065	3L_109065_SNP [dm3] 3L_109065_SNP [dm6]	G	A	4.120e^-4	0.807	INTERGENIC
3L	16205288	3L_16205288_SNP [dm3] 3L_16212188_SNP [dm6]	A	G	4.129e^-4	0.807	DOWNSTREAM CG13073 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9814443	X_9814443_SNP [dm3] X_9920410_SNP [dm6]	C	T	4.130e^-4	0.807	INTERGENIC
3R	18478605	3R_18478605_SNP [dm3] 3R_22652883_SNP [dm6]	T	A	4.131e^-4	0.807	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9775935	X_9775935_SNP [dm3] X_9881902_SNP [dm6]	C	T	4.141e^-4	0.807	UPSTREAM CG9689 INTERGENIC	TF binding site mE1_TFBS_Trl
X	4091100	X_4091100_SNP [dm3] X_4197067_SNP [dm6]	G	C	4.145e^-4	0.807	INTRON Fas2
3L	11708590	3L_11708590_SNP [dm3] 3L_11715490_SNP [dm6]	G	A	4.146e^-4	0.807	UPSTREAM CG14132 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	12025622	3L_12025622_SNP [dm3] 3L_12032522_SNP [dm6]	A	T	4.157e^-4	0.807	UPSTREAM CG43993 INTRON rols
2L	4512900	2L_4512900_SNP [dm3] 2L_4512900_SNP [dm6]	C	T	4.158e^-4	0.807	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4324850	2L_4324850_SNP [dm3] 2L_4324850_SNP [dm6]	T	C	4.159e^-4	0.807	UTR_5_PRIME CG16857
X	19518813	X_19518813_DEL [dm3] X_19624780_DEL [dm6]	CAACATTGATGTCC...	C	4.162e^-4	0.807	UTR_3_PRIME MKP-4 UPSTREAM CG14212	TF binding site mE1_TFBS_cad
2L	4365480	2L_4365480_SNP [dm3] 2L_4365480_SNP [dm6]	T	C	4.164e^-4	0.807	INTRON Traf4	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	14972052	3R_14972052_SNP [dm3] 3R_19146330_SNP [dm6]	A	G	4.164e^-4	0.807	INTRON Ppcs
3L	18575735	3L_18575735_SNP [dm3] 3L_18582635_SNP [dm6]	C	A	4.166e^-4	0.807	UPSTREAM CR45435 INTERGENIC
X	10011102	X_10011102_SNP [dm3] X_10117069_SNP [dm6]	T	A	4.166e^-4	0.807	INTRON RhoU & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2989486	3R_2989486_SNP [dm3] 3R_7163764_SNP [dm6]	C	G	4.167e^-4	0.807	INTRON sas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15134572	3R_15134572_SNP [dm3] 3R_19308850_SNP [dm6]	C	T	4.169e^-4	0.807	INTRON Dl
2L	4624701	2L_4624701_SNP [dm3] 2L_4624701_SNP [dm6]	C	T	4.173e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7213850	2L_7213850_SNP [dm3] 2L_7213850_SNP [dm6]	A	T	4.187e^-4	0.807	INTRON CG13784	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4622857	2L_4622857_SNP [dm3] 2L_4622857_SNP [dm6]	T	G	4.189e^-4	0.807	INTERGENIC
3L	14809022	3L_14809022_SNP [dm3] 3L_14815922_SNP [dm6]	A	T	4.191e^-4	0.807	INTRON CG17839
3L	4289756	3L_4289756_SNP [dm3] 3L_4289756_SNP [dm6]	C	A	4.193e^-4	0.807	SYNONYMOUS_CODING Hexo1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14270956	2R_14270956_DEL [dm3] 2R_18383451_DEL [dm6]	ATTTTT	A	4.198e^-4	0.807	UPSTREAM IM1 & 1 other INTERGENIC
3L	15222857	3L_15222857_SNP [dm3] 3L_15229757_SNP [dm6]	G	T	4.200e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z
2L	1834490	2L_1834490_SNP [dm3] 2L_1834490_SNP [dm6]	A	G	4.207e^-4	0.807	INTERGENIC
3L	13310278	3L_13310278_SNP [dm3] 3L_13317178_SNP [dm6]	C	G	4.208e^-4	0.807	INTERGENIC
3R	25570322	3R_25570322_SNP [dm3] 3R_29744600_SNP [dm6]	A	G	4.212e^-4	0.807	SYNONYMOUS_CODING CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18838920	2R_18838920_SNP [dm3] 2R_22951397_SNP [dm6]	G	A	4.217e^-4	0.807	DOWNSTREAM CR32835 EXON CR32835
3L	15483234	3L_15483234_SNP [dm3] 3L_15490134_SNP [dm6]	A	C	4.219e^-4	0.807	INTERGENIC
2L	8956572	2L_8956572_SNP [dm3] 2L_8956572_SNP [dm6]	A	T	4.226e^-4	0.807	UPSTREAM CG31886 INTRON CG31886	TF binding site BDTNP1_TFBS_twi mE1_TFBS_zfh1
3R	14618452	3R_14618452_SNP [dm3] 3R_18792730_SNP [dm6]	G	A	4.227e^-4	0.807	UPSTREAM CG7720 INTRON CG7720
3L	2377907	3L_2377907_SNP [dm3] 3L_2377907_SNP [dm6]	T	A	4.229e^-4	0.807	UTR_5_PRIME CG45186 UPSTREAM CG15877 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14694914	2L_14694914_SNP [dm3] 2L_14694914_SNP [dm6]	C	T	4.236e^-4	0.807	INTERGENIC
3L	10248085	3L_10248085_DEL [dm3] 3L_10254985_DEL [dm6]	TC	T	4.238e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	19200358	3R_19200358_SNP [dm3] 3R_23374636_SNP [dm6]	A	G	4.247e^-4	0.807	DOWNSTREAM CG42828 INTERGENIC
3L	7113650	3L_7113650_SNP [dm3] 3L_7120550_SNP [dm6]	C	T	4.249e^-4	0.807	SYNONYMOUS_CODING form3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19802933	2L_19802933_SNP [dm3] 2L_19802933_SNP [dm6]	G	A	4.253e^-4	0.807	INTRON sick
3L	7047712	3L_7047712_SNP [dm3] 3L_7054612_SNP [dm6]	T	A	4.253e^-4	0.807	INTERGENIC
3L	4821762	3L_4821762_DEL [dm3] 3L_4821762_DEL [dm6]	ATTCTAGCACA...	A	4.257e^-4	0.807	INTRON Dhc64C
X	9299517	X_9299517_DEL [dm3] X_9405484_DEL [dm6]	TT	T	4.259e^-4	0.807	INTRON mgl
2R	19513530	2R_19513530_SNP [dm3] 2R_23626007_SNP [dm6]	G	C	4.266e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4373663	3L_4373663_SNP [dm3] 3L_4373663_SNP [dm6]	T	C	4.267e^-4	0.807	INTRON DopEcR
3L	15483252	3L_15483252_SNP [dm3] 3L_15490152_SNP [dm6]	G	T	4.275e^-4	0.807	INTERGENIC
3L	18151652	3L_18151652_SNP [dm3] 3L_18158552_SNP [dm6]	G	T	4.279e^-4	0.807	NON_SYNONYMOUS_CODING CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4373692	3L_4373692_SNP [dm3] 3L_4373692_SNP [dm6]	A	C	4.287e^-4	0.807	INTRON DopEcR
2R	16864853	2R_16864853_SNP [dm3] 2R_20977348_SNP [dm6]	C	T	4.288e^-4	0.807	SYNONYMOUS_CODING CG9344 DOWNSTREAM CG15650 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
X	14844294	X_14844294_SNP [dm3] X_14950261_SNP [dm6]	A	C	4.290e^-4	0.807	INTRON pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	10124137	3L_10124137_SNP [dm3] 3L_10131037_SNP [dm6]	C	T	4.294e^-4	0.807	INTRON dpr6
3R	5313746	3R_5313746_SNP [dm3] 3R_9488024_SNP [dm6]	C	A	4.312e^-4	0.807	INTRON CG16779	TF binding site BDTNP1_TFBS_dl
3R	23777445	3R_23777445_SNP [dm3] 3R_27951723_SNP [dm6]	C	T	4.314e^-4	0.807	SYNONYMOUS_CODING Gp93 DOWNSTREAM CG4951	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10434567	3R_10434567_SNP [dm3] 3R_14608845_SNP [dm6]	C	T	4.319e^-4	0.807	UPSTREAM CG14853 DOWNSTREAM stumps INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25570904	3R_25570904_SNP [dm3] 3R_29745182_SNP [dm6]	G	C	4.322e^-4	0.807	UPSTREAM IntS11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	21851919	2L_21851919_INS [dm3] 2L_21851919_INS [dm6]	T	TTCT	4.325e^-4	0.807	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	951165	3L_951165_SNP [dm3] 3L_951165_SNP [dm6]	A	T	4.330e^-4	0.807	INTRON Glut1
X	16344746	X_16344746_SNP [dm3] X_16450713_SNP [dm6]	A	T	4.331e^-4	0.807	INTRON Rbp2
3R	4679346	3R_4679346_DEL [dm3] 3R_8853624_DEL [dm6]	ATTT	CC	4.335e^-4	0.807	INTRON pyd
3L	2645081	3L_2645081_SNP [dm3] 3L_2645081_SNP [dm6]	A	G	4.338e^-4	0.807	UPSTREAM CG1143 INTERGENIC
2R	17590895	2R_17590895_SNP [dm3] 2R_21703390_SNP [dm6]	C	T	4.340e^-4	0.807	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3R	16571382	3R_16571382_SNP [dm3] 3R_20745660_SNP [dm6]	A	T	4.344e^-4	0.807	UPSTREAM CG31200 INTRON CG42322
3R	17352754	3R_17352754_SNP [dm3] 3R_21527032_SNP [dm6]	A	C	4.355e^-4	0.807	UTR_3_PRIME CG7956 INTRON CG7956	TF binding site mE1_TFBS_cad
3L	4290259	3L_4290259_SNP [dm3] 3L_4290259_SNP [dm6]	C	T	4.356e^-4	0.807	SYNONYMOUS_CODING Hexo1 DOWNSTREAM CG15012	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	3680402	3L_3680402_SNP [dm3] 3L_3680402_SNP [dm6]	T	C	4.358e^-4	0.807	INTERGENIC
3L	18563584	3L_18563584_SNP [dm3] 3L_18570484_SNP [dm6]	A	G	4.359e^-4	0.807	INTRON AstC-R1
2L	1945327	2L_1945327_SNP [dm3] 2L_1945327_SNP [dm6]	C	T	4.360e^-4	0.807	NON_SYNONYMOUS_CODING CG15357 DOWNSTREAM CG33673
3R	10224630	3R_10224630_SNP [dm3] 3R_14398908_SNP [dm6]	T	C	4.360e^-4	0.807	INTRON cv-c
3L	7479852	3L_7479852_SNP [dm3] 3L_7486752_SNP [dm6]	T	G	4.364e^-4	0.807	INTRON mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25211868	3R_25211868_SNP [dm3] 3R_29386146_SNP [dm6]	G	A	4.364e^-4	0.807	INTRON Ptp99A

By genomic position
Variant impact
Gene name

Wing_Posterior_to_L5 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results