DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.401e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.04859
In_3R_K	0.06900

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	5.9901	0.05
In_3R_Mo	4.7157	0.0946

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2769 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	4.486e^-7	0.35	INTRON dnc
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	5.499e^-7	0.35	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4737896	3L_4737896_SNP [dm3] 3L_4737896_SNP [dm6]	G	A	6.266e^-7	0.35	INTRON RhoGEF64C
3R	4349280	3R_4349280_SNP [dm3] 3R_8523558_SNP [dm6]	T	C	7.458e^-7	0.35	UPSTREAM CG31259 DOWNSTREAM CG31454 INTERGENIC
3L	4737895	3L_4737895_SNP [dm3] 3L_4737895_SNP [dm6]	A	G	1.109e^-6	0.416	INTRON RhoGEF64C
3L	4737859	3L_4737859_SNP [dm3] 3L_4737859_SNP [dm6]	A	G	1.590e^-6	0.49	INTRON RhoGEF64C
3R	25912708	3R_25912708_SNP [dm3] 3R_30086986_SNP [dm6]	C	A	1.829e^-6	0.49	INTRON sima
X	10443026	X_10443026_SNP [dm3] X_10548993_SNP [dm6]	C	T	3.118e^-6	0.611	INTRON spri
X	11756868	X_11756868_SNP [dm3] X_11862835_SNP [dm6]	G	T	3.167e^-6	0.611	SYNONYMOUS_CODING ATP7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4841343	3L_4841343_SNP [dm3] 3L_4841343_SNP [dm6]	A	C	3.531e^-6	0.611	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	23141757	3R_23141757_SNP [dm3] 3R_27316035_SNP [dm6]	T	A	3.583e^-6	0.611	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	23141761	3R_23141761_INS [dm3] 3R_27316039_INS [dm6]	G	GG	5.050e^-6	0.626	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	22306203	2L_22306203_SNP [dm3] 2L_22306203_SNP [dm6]	T	C	5.188e^-6	0.626	INTERGENIC
3R	8388326	3R_8388326_SNP [dm3] 3R_12562604_SNP [dm6]	C	T	5.547e^-6	0.626	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
3L	4737892	3L_4737892_SNP [dm3] 3L_4737892_SNP [dm6]	T	C	6.165e^-6	0.626	INTRON RhoGEF64C
3L	2645866	3L_2645866_SNP [dm3] 3L_2645866_SNP [dm6]	A	G	7.525e^-6	0.626	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14489497	3L_14489497_SNP [dm3] 3L_14496397_SNP [dm6]	T	A	8.553e^-6	0.626	INTRON bbg	TF binding site mE1_TFBS_cad
3L	11525805	3L_11525805_SNP [dm3] 3L_11532705_SNP [dm6]	G	A	8.804e^-6	0.626	INTRON Mob2
3R	4349394	3R_4349394_SNP [dm3] 3R_8523672_SNP [dm6]	G	A	9.049e^-6	0.626	UPSTREAM CG31259 DOWNSTREAM CG31454 INTERGENIC
3L	14489486	3L_14489486_SNP [dm3] 3L_14496386_SNP [dm6]	A	C	9.074e^-6	0.626	INTRON bbg	TF binding site mE1_TFBS_cad
3L	14489495	3L_14489495_SNP [dm3] 3L_14496395_SNP [dm6]	G	A	9.074e^-6	0.626	INTRON bbg	TF binding site mE1_TFBS_cad
X	9508220	X_9508220_DEL [dm3] X_9614187_DEL [dm6]	CGATCTTGGGGC...	C	9.173e^-6	0.626	INTRON CG42797
3L	16725723	3L_16725723_SNP [dm3] 3L_16732623_SNP [dm6]	C	G	9.428e^-6	0.626	UPSTREAM CG9701 INTERGENIC
3R	18088425	3R_18088425_SNP [dm3] 3R_22262703_SNP [dm6]	G	A	1.032e^-5	0.626	INTRON SKIP
3R	4415773	3R_4415773_SNP [dm3] 3R_8590051_SNP [dm6]	G	T	1.115e^-5	0.626	INTRON 5-HT2B	TF binding site mE1_TFBS_cad
2R	12281986	2R_12281986_SNP [dm3] 2R_16394481_SNP [dm6]	A	T	1.201e^-5	0.626	INTRON Sema-2b
3L	1857609	3L_1857609_SNP [dm3] 3L_1857609_SNP [dm6]	A	G	1.263e^-5	0.626	NON_SYNONYMOUS_CODING CG12024	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24829701	3R_24829701_SNP [dm3] 3R_29003979_SNP [dm6]	C	G	1.281e^-5	0.626	INTRON wat
X	14227406	X_14227406_SNP [dm3] X_14333373_SNP [dm6]	T	C	1.344e^-5	0.626	INTRON dpr8
3R	4415784	3R_4415784_SNP [dm3] 3R_8590062_SNP [dm6]	C	T	1.365e^-5	0.626	INTRON 5-HT2B	TF binding site mE1_TFBS_cad
3R	4415796	3R_4415796_SNP [dm3] 3R_8590074_SNP [dm6]	C	A	1.365e^-5	0.626	INTRON 5-HT2B	TF binding site mE1_TFBS_cad
3L	14489459	3L_14489459_SNP [dm3] 3L_14496359_SNP [dm6]	G	C	1.389e^-5	0.626	INTRON bbg	TF binding site mE1_TFBS_cad
3R	4354693	3R_4354693_SNP [dm3] 3R_8528971_SNP [dm6]	C	T	1.428e^-5	0.626	UPSTREAM CG11741 INTERGENIC	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	4340520	3R_4340520_SNP [dm3] 3R_8514798_SNP [dm6]	T	A	1.448e^-5	0.626	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	17952250	X_17952250_SNP [dm3] X_18058217_SNP [dm6]	G	A	1.544e^-5	0.626	INTRON Sh
3L	14489439	3L_14489439_SNP [dm3] 3L_14496339_SNP [dm6]	A	G	1.583e^-5	0.626	INTRON bbg	TF binding site mE1_TFBS_cad
3R	16890386	3R_16890386_SNP [dm3] 3R_21064664_SNP [dm6]	A	G	1.586e^-5	0.626	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
X	21160839	X_21160839_SNP [dm3] X_21289812_SNP [dm6]	T	C	1.651e^-5	0.626	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17894354	2R_17894354_SNP [dm3] 2R_22006849_SNP [dm6]	A	G	1.673e^-5	0.626	INTRON CG34370
2L	17791346	2L_17791346_SNP [dm3] 2L_17791346_SNP [dm6]	T	C	1.696e^-5	0.626	INTRON CadN2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17792863	2L_17792863_SNP [dm3] 2L_17792863_SNP [dm6]	C	A	1.696e^-5	0.626	INTRON CadN2 EXON CR43419	TF binding site mE1_TFBS_cad
X	3035763	X_3035763_DEL [dm3] X_3141730_DEL [dm6]	GG	G	1.705e^-5	0.626	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	14678933	X_14678933_SNP [dm3] X_14784900_SNP [dm6]	A	C	1.731e^-5	0.626	UTR_3_PRIME Ag5r UPSTREAM Ag5r2 DOWNSTREAM Ag5r
X	17952248	X_17952248_SNP [dm3] X_18058215_SNP [dm6]	C	A	1.741e^-5	0.626	INTRON Sh
3L	11277473	3L_11277473_SNP [dm3] 3L_11284373_SNP [dm6]	G	A	1.777e^-5	0.626	UPSTREAM CR45404 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	14835275	3L_14835275_INS [dm3] 3L_14842175_INS [dm6]	T	TTGCAA	1.784e^-5	0.626	INTRON CG17839
X	4094020	X_4094020_SNP [dm3] X_4199987_SNP [dm6]	T	C	1.806e^-5	0.626	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	1381522	2L_1381522_SNP [dm3] 2L_1381522_SNP [dm6]	T	C	1.809e^-5	0.626	SYNONYMOUS_CODING lea UTR_3_PRIME lea UPSTREAM CR44898 EXON CR44897	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	9661340	3L_9661340_SNP [dm3] 3L_9668240_SNP [dm6]	C	G	1.822e^-5	0.626	INTRON fry	TF binding site mE1_TFBS_cad
3L	7071913	3L_7071913_SNP [dm3] 3L_7078813_SNP [dm6]	A	C	1.871e^-5	0.626	INTERGENIC
3R	24926199	3R_24926199_SNP [dm3] 3R_29100477_SNP [dm6]	C	T	2.021e^-5	0.626	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17333598	2L_17333598_SNP [dm3] 2L_17333598_SNP [dm6]	G	A	2.046e^-5	0.626	INTERGENIC
3R	23141751	3R_23141751_SNP [dm3] 3R_27316029_SNP [dm6]	C	A	2.047e^-5	0.626	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	9147422	2R_9147422_SNP [dm3] 2R_13259917_SNP [dm6]	A	T	2.087e^-5	0.626	UPSTREAM CG42319 INTERGENIC
2R	12282058	2R_12282058_SNP [dm3] 2R_16394553_SNP [dm6]	G	A	2.122e^-5	0.626	INTRON Sema-2b
2R	19726701	2R_19726701_SNP [dm3] 2R_23839178_SNP [dm6]	C	T	2.270e^-5	0.626	UTR_3_PRIME CG5549 DOWNSTREAM snoRNA:Psi18S-176
3R	10807182	3R_10807182_INS [dm3] 3R_14981460_INS [dm6]	A	ATCGTATCCTAAGA...	2.300e^-5	0.626	INTERGENIC
3R	27129738	3R_27129738_SNP [dm3] 3R_31304016_SNP [dm6]	G	A	2.301e^-5	0.626	SYNONYMOUS_CODING CG11340
2L	8697403	2L_8697403_SNP [dm3] 2L_8697403_SNP [dm6]	T	G	2.309e^-5	0.626	INTRON Hnf4
3R	4342921	3R_4342921_SNP [dm3] 3R_8517199_SNP [dm6]	C	T	2.335e^-5	0.626	UPSTREAM CG11737 INTERGENIC
2L	13211544	2L_13211544_SNP [dm3] 2L_13211544_SNP [dm6]	T	C	2.337e^-5	0.626	NON_SYNONYMOUS_CODING CG15482 DOWNSTREAM Pect & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2926031	X_2926031_SNP [dm3] X_3031998_SNP [dm6]	C	A	2.341e^-5	0.626	INTRON kirre
3L	7072423	3L_7072423_SNP [dm3] 3L_7079323_SNP [dm6]	C	A	2.405e^-5	0.626	INTERGENIC
3L	1734655	3L_1734655_SNP [dm3] 3L_1734655_SNP [dm6]	G	A	2.473e^-5	0.626	SYNONYMOUS_CODING Oseg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	21160844	X_21160844_SNP [dm3] X_21289817_SNP [dm6]	G	C	2.523e^-5	0.626	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	712376	3L_712376_SNP [dm3] 3L_712376_SNP [dm6]	G	A	2.555e^-5	0.626	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	17790757	2L_17790757_SNP [dm3] 2L_17790757_SNP [dm6]	G	A	2.563e^-5	0.626	INTRON CadN2
3L	712384	3L_712384_SNP [dm3] 3L_712384_SNP [dm6]	T	C	2.565e^-5	0.626	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	1675714	2L_1675714_SNP [dm3] 2L_1675714_SNP [dm6]	T	A	2.616e^-5	0.626	INTRON chinmo
2L	1675720	2L_1675720_SNP [dm3] 2L_1675720_SNP [dm6]	C	G	2.616e^-5	0.626	INTRON chinmo
3R	19217624	3R_19217624_SNP [dm3] 3R_23391902_SNP [dm6]	G	A	2.633e^-5	0.626	INTERGENIC
X	4093939	X_4093939_SNP [dm3] X_4199906_SNP [dm6]	A	C	2.634e^-5	0.626	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	20262267	X_20262267_SNP [dm3] X_20391240_SNP [dm6]	A	G	2.683e^-5	0.626	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3035757	X_3035757_SNP [dm3] X_3141724_SNP [dm6]	A	T	2.690e^-5	0.626	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	7207266	2L_7207266_SNP [dm3] 2L_7207266_SNP [dm6]	T	A	2.690e^-5	0.626	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784
3R	4375176	3R_4375176_SNP [dm3] 3R_8549454_SNP [dm6]	C	A	2.725e^-5	0.626	INTERGENIC
X	2926734	X_2926734_SNP [dm3] X_3032701_SNP [dm6]	C	A	2.789e^-5	0.626	INTRON kirre
3R	27128046	3R_27128046_SNP [dm3] 3R_31302324_SNP [dm6]	C	T	2.795e^-5	0.626	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_inv
3R	16890626	3R_16890626_SNP [dm3] 3R_21064904_SNP [dm6]	A	T	2.817e^-5	0.626	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3L	14471217	3L_14471217_SNP [dm3] 3L_14478117_SNP [dm6]	T	C	2.837e^-5	0.626	INTRON bbg
3L	712385	3L_712385_DEL [dm3] 3L_712385_DEL [dm6]	TA	T	2.868e^-5	0.626	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	16890622	3R_16890622_SNP [dm3] 3R_21064900_SNP [dm6]	G	A	2.877e^-5	0.626	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
2L	1239660	2L_1239660_SNP [dm3] 2L_1239660_SNP [dm6]	G	A	2.957e^-5	0.626	UPSTREAM CG5397 INTERGENIC
2L	7002231	2L_7002231_SNP [dm3] 2L_7002231_SNP [dm6]	G	A	2.996e^-5	0.626	INTRON uif
3L	1732983	3L_1732983_SNP [dm3] 3L_1732983_SNP [dm6]	A	G	3.022e^-5	0.626	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	8628993	X_8628993_SNP [dm3] X_8734960_SNP [dm6]	G	A	3.032e^-5	0.626	INTERGENIC
X	8156894	X_8156894_INS [dm3] X_8262861_INS [dm6]	T	TTCCACGCTCCGAACCAAAT...	3.067e^-5	0.626	INTRON CG1632	TF binding site BDTNP1_TFBS_da
X	16609443	X_16609443_SNP [dm3] X_16715410_SNP [dm6]	C	A	3.130e^-5	0.626	INTRON CG34325
3L	11927532	3L_11927532_SNP [dm3] 3L_11934432_SNP [dm6]	G	T	3.150e^-5	0.626	SYNONYMOUS_CODING byn INTRON CG44837	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16609445	X_16609445_DEL [dm3] X_16715412_DEL [dm6]	ATCCATACA	A	3.162e^-5	0.626	INTRON CG34325
3L	9661315	3L_9661315_SNP [dm3] 3L_9668215_SNP [dm6]	A	G	3.175e^-5	0.626	INTRON fry	TF binding site mE1_TFBS_cad
2L	8447278	2L_8447278_SNP [dm3] 2L_8447278_SNP [dm6]	T	G	3.425e^-5	0.626	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	27127740	3R_27127740_SNP [dm3] 3R_31302018_SNP [dm6]	G	C	3.433e^-5	0.626	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	10435085	3R_10435085_SNP [dm3] 3R_14609363_SNP [dm6]	G	T	3.456e^-5	0.626	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	15264242	X_15264242_SNP [dm3] X_15370209_SNP [dm6]	T	C	3.669e^-5	0.626	INTRON acj6
3L	14489501	3L_14489501_DEL [dm3] 3L_14496401_DEL [dm6]	TA	T	3.720e^-5	0.626	INTRON bbg	TF binding site mE1_TFBS_cad
2R	16340634	2R_16340634_SNP [dm3] 2R_20453129_SNP [dm6]	A	G	3.903e^-5	0.626	INTRON CG12484
X	13265005	X_13265005_SNP [dm3] X_13370972_SNP [dm6]	G	A	3.909e^-5	0.626	UPSTREAM CG1640 DOWNSTREAM dmrt11E INTRON CG1640	TF binding site BDTNP1_TFBS_dl
3L	8391972	3L_8391972_SNP [dm3] 3L_8398872_SNP [dm6]	A	T	3.934e^-5	0.626	INTRON CG7120
3L	14813948	3L_14813948_SNP [dm3] 3L_14820848_SNP [dm6]	G	A	3.950e^-5	0.626	INTRON CG17839
3L	14299077	3L_14299077_SNP [dm3] 3L_14305977_SNP [dm6]	G	T	3.999e^-5	0.626	INTRON fz
2L	15959956	2L_15959956_SNP [dm3] 2L_15959956_SNP [dm6]	G	C	4.012e^-5	0.626	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
X	11756604	X_11756604_SNP [dm3] X_11862571_SNP [dm6]	T	C	4.020e^-5	0.626	SYNONYMOUS_CODING ATP7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13600672	3R_13600672_SNP [dm3] 3R_17774950_SNP [dm6]	C	T	4.026e^-5	0.626	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15635046	2L_15635046_SNP [dm3] 2L_15635046_SNP [dm6]	T	C	4.079e^-5	0.626	DOWNSTREAM CG18480 INTERGENIC
3L	2646310	3L_2646310_SNP [dm3] 3L_2646310_SNP [dm6]	T	C	4.093e^-5	0.626	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14678270	2R_14678270_SNP [dm3] 2R_18790765_SNP [dm6]	T	C	4.101e^-5	0.626	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12754429	X_12754429_SNP [dm3] X_12860396_SNP [dm6]	C	A	4.106e^-5	0.626	INTRON Pde9
3L	14489539	3L_14489539_INS [dm3] 3L_14496439_INS [dm6]	A	ATTTTCTA	4.121e^-5	0.626	INTRON bbg
X	19019176	X_19019176_SNP [dm3] X_19125143_SNP [dm6]	C	A	4.134e^-5	0.626	UTR_3_PRIME tgy UPSTREAM CG15882 DOWNSTREAM tgy
2L	15469667	2L_15469667_SNP [dm3] 2L_15469667_SNP [dm6]	T	G	4.185e^-5	0.626	UPSTREAM CR45353 INTERGENIC
3R	27136505	3R_27136505_SNP [dm3] 3R_31310783_SNP [dm6]	T	A	4.207e^-5	0.626	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	712235	3L_712235_SNP [dm3] 3L_712235_SNP [dm6]	C	T	4.229e^-5	0.626	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	3437649	2L_3437649_SNP [dm3] 2L_3437649_SNP [dm6]	A	T	4.234e^-5	0.626	INTERGENIC
2R	19522673	2R_19522673_SNP [dm3] 2R_23635150_SNP [dm6]	G	T	4.256e^-5	0.626	INTRON retn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	11756760	X_11756760_SNP [dm3] X_11862727_SNP [dm6]	C	T	4.262e^-5	0.626	SYNONYMOUS_CODING ATP7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4004096	3L_4004096_SNP [dm3] 3L_4004096_SNP [dm6]	G	T	4.262e^-5	0.626	INTRON CG14985
3L	1857653	3L_1857653_SNP [dm3] 3L_1857653_SNP [dm6]	C	T	4.291e^-5	0.626	SYNONYMOUS_CODING CG12024	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1731275	3L_1731275_SNP [dm3] 3L_1731275_SNP [dm6]	A	G	4.351e^-5	0.626	UTR_3_PRIME Oseg4 UPSTREAM drpr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14835265	3L_14835265_SNP [dm3] 3L_14842165_SNP [dm6]	T	C	4.381e^-5	0.626	INTRON CG17839
3L	8322009	3L_8322009_SNP [dm3] 3L_8328909_SNP [dm6]	A	C	4.402e^-5	0.626	DOWNSTREAM CG34461 INTRON CG34462	TF binding site mE1_TFBS_ttk
2L	17891617	2L_17891617_SNP [dm3] 2L_17891617_SNP [dm6]	C	T	4.417e^-5	0.626	INTERGENIC
X	18502007	X_18502007_INS [dm3] X_18607974_INS [dm6]	G	GATCTGGTTG	4.441e^-5	0.626	CODON_INSERTION CG15040	TF binding site mE1_TFBS_chinmo
3R	8390085	3R_8390085_SNP [dm3] 3R_12564363_SNP [dm6]	C	T	4.459e^-5	0.626	INTRON Octbeta2R	TF binding site mE1_TFBS_HSA mE1_TFBS_run
X	8785031	X_8785031_SNP [dm3] X_8890998_SNP [dm6]	G	T	4.527e^-5	0.626	INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	16890805	3R_16890805_SNP [dm3] 3R_21065083_SNP [dm6]	A	C	4.597e^-5	0.626	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3R	4364658	3R_4364658_SNP [dm3] 3R_8538936_SNP [dm6]	T	A	4.610e^-5	0.626	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	10785598	2L_10785598_SNP [dm3] 2L_10785598_SNP [dm6]	A	T	4.626e^-5	0.626	INTRON CG31869 EXON CR44582
2L	17324045	2L_17324045_SNP [dm3] 2L_17324045_SNP [dm6]	T	C	4.667e^-5	0.626	INTERGENIC
3L	9735039	3L_9735039_SNP [dm3] 3L_9741939_SNP [dm6]	A	T	4.743e^-5	0.626	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5897074	X_5897074_SNP [dm3] X_6003041_SNP [dm6]	T	C	4.750e^-5	0.626	INTRON CR44498
X	20561531	X_20561531_SNP [dm3] X_20690504_SNP [dm6]	A	T	4.751e^-5	0.626	UPSTREAM run EXON CR45610	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	17952263	X_17952263_SNP [dm3] X_18058230_SNP [dm6]	A	G	4.755e^-5	0.626	INTRON Sh
3R	5448700	3R_5448700_SNP [dm3] 3R_9622978_SNP [dm6]	G	T	4.765e^-5	0.626	UTR_5_PRIME CG8312 INTRON CG8312
3L	8681778	3L_8681778_SNP [dm3] 3L_8688678_SNP [dm6]	A	C	4.854e^-5	0.626	INTERGENIC
3L	1857764	3L_1857764_SNP [dm3] 3L_1857764_SNP [dm6]	T	C	4.897e^-5	0.626	SYNONYMOUS_CODING CG12024	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9147438	2R_9147438_SNP [dm3] 2R_13259933_SNP [dm6]	G	A	4.972e^-5	0.626	UPSTREAM CG42319 INTERGENIC
2L	6499760	2L_6499760_SNP [dm3] 2L_6499760_SNP [dm6]	G	A	5.006e^-5	0.626	SYNONYMOUS_CODING CG31637	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	712348	3L_712348_SNP [dm3] 3L_712348_SNP [dm6]	G	T	5.026e^-5	0.626	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	4364688	3R_4364688_SNP [dm3] 3R_8538966_SNP [dm6]	A	G	5.084e^-5	0.626	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	9443434	2L_9443434_SNP [dm3] 2L_9443434_SNP [dm6]	C	T	5.119e^-5	0.626	INTRON numb
X	14859243	X_14859243_SNP [dm3] X_14965210_SNP [dm6]	G	A	5.131e^-5	0.626	INTRON eag
3R	4349198	3R_4349198_SNP [dm3] 3R_8523476_SNP [dm6]	A	T	5.197e^-5	0.626	NON_SYNONYMOUS_CODING CG31454 UPSTREAM CG31259
3L	2645600	3L_2645600_SNP [dm3] 3L_2645600_SNP [dm6]	A	T	5.214e^-5	0.626	INTRON CG1143	TF binding site mE1_TFBS_cad
3R	24485802	3R_24485802_SNP [dm3] 3R_28660080_SNP [dm6]	A	G	5.218e^-5	0.626	INTERGENIC
3L	1733121	3L_1733121_SNP [dm3] 3L_1733121_SNP [dm6]	A	G	5.233e^-5	0.626	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6374552	3L_6374552_SNP [dm3] 3L_6381452_SNP [dm6]	C	T	5.299e^-5	0.626	INTERGENIC
3R	24353994	3R_24353994_SNP [dm3] 3R_28528272_SNP [dm6]	G	A	5.307e^-5	0.626	NON_SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8447265	2L_8447265_SNP [dm3] 2L_8447265_SNP [dm6]	A	G	5.307e^-5	0.626	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	17887201	2L_17887201_SNP [dm3] 2L_17887201_SNP [dm6]	T	A	5.331e^-5	0.626	INTERGENIC
3R	18780271	3R_18780271_SNP [dm3] 3R_22954549_SNP [dm6]	G	A	5.367e^-5	0.626	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	6462979	3L_6462979_SNP [dm3] 3L_6469879_SNP [dm6]	T	A	5.433e^-5	0.626	INTRON CG42747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	12550294	2R_12550294_DEL [dm3] 2R_16662789_DEL [dm6]	TT	T	5.482e^-5	0.626	INTRON Picot
3L	4715332	3L_4715332_SNP [dm3] 3L_4715332_SNP [dm6]	T	A	5.484e^-5	0.626	INTRON RhoGEF64C
X	16032541	X_16032541_SNP [dm3] X_16138508_SNP [dm6]	A	G	5.547e^-5	0.626	INTRON disco-r	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	5216125	3L_5216125_SNP [dm3] 3L_5223025_SNP [dm6]	C	T	5.557e^-5	0.626	INTRON shep
X	14679288	X_14679288_SNP [dm3] X_14785255_SNP [dm6]	T	C	5.563e^-5	0.626	UTR_3_PRIME Ag5r
X	11756923	X_11756923_SNP [dm3] X_11862890_SNP [dm6]	C	A	5.614e^-5	0.626	INTRON ATP7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17321292	X_17321292_DEL [dm3] X_17427259_DEL [dm6]	AA	A	5.615e^-5	0.626	INTRON CG12994 & 1 other	TF binding site mE1_TFBS_D
3L	13339531	3L_13339531_SNP [dm3] 3L_13346431_SNP [dm6]	G	T	5.649e^-5	0.626	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20227751	X_20227751_INS [dm3] X_20356724_INS [dm6]	C	CGC	5.651e^-5	0.626	INTERGENIC
2R	11392356	2R_11392356_SNP [dm3] 2R_15504851_SNP [dm6]	A	G	5.780e^-5	0.626	SYNONYMOUS_CODING Ir52c
3L	3966395	3L_3966395_SNP [dm3] 3L_3966395_SNP [dm6]	C	T	5.924e^-5	0.626	INTERGENIC
X	8156849	X_8156849_SNP [dm3] X_8262816_SNP [dm6]	T	C	5.991e^-5	0.626	INTRON CG1632	TF binding site BDTNP1_TFBS_da
3L	11169351	3L_11169351_SNP [dm3] 3L_11176251_SNP [dm6]	C	A	6.002e^-5	0.626	UTR_3_PRIME CG14142 DOWNSTREAM GlcAT-P
X	8156863	X_8156863_SNP [dm3] X_8262830_SNP [dm6]	T	C	6.011e^-5	0.626	INTRON CG1632	TF binding site BDTNP1_TFBS_da
3R	5448817	3R_5448817_SNP [dm3] 3R_9623095_SNP [dm6]	C	A	6.026e^-5	0.626	INTRON CG8312	TF binding site mE1_TFBS_cad
2L	3114476	2L_3114476_SNP [dm3] 2L_3114476_SNP [dm6]	C	G	6.060e^-5	0.626	INTRON toc
3L	14565106	3L_14565106_DEL [dm3] 3L_14572006_DEL [dm6]	TT	T	6.136e^-5	0.626	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5774406	2L_5774406_SNP [dm3] 2L_5774406_SNP [dm6]	G	T	6.223e^-5	0.626	UPSTREAM CG9171 INTRON CG9171	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18475324	2R_18475324_DEL [dm3] 2R_22587819_DEL [dm6]	GA	G	6.231e^-5	0.626	INTRON dnr1
2L	17790175	2L_17790175_SNP [dm3] 2L_17790175_SNP [dm6]	G	A	6.246e^-5	0.626	INTRON CadN2
X	2700983	X_2700983_SNP [dm3] X_2806950_SNP [dm6]	G	A	6.248e^-5	0.626	INTRON kirre
3L	1734436	3L_1734436_SNP [dm3] 3L_1734436_SNP [dm6]	A	G	6.272e^-5	0.626	SPLICE_SITE_REGION Oseg4 INTRON Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17908230	2R_17908230_DEL [dm3] 2R_22020725_DEL [dm6]	AA	A	6.280e^-5	0.626	INTRON CG34370
3L	20811938	3L_20811938_SNP [dm3] 3L_20818838_SNP [dm6]	C	T	6.282e^-5	0.626	UPSTREAM Pka-R1 & 1 other INTRON Pka-R1
3L	1730245	3L_1730245_SNP [dm3] 3L_1730245_SNP [dm6]	A	G	6.284e^-5	0.626	DOWNSTREAM Oseg4 INTRON drpr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	17321343	X_17321343_SNP [dm3] X_17427310_SNP [dm6]	C	G	6.290e^-5	0.626	INTRON CG12994 & 1 other	TF binding site mE1_TFBS_D
2L	3399496	2L_3399496_SNP [dm3] 2L_3399496_SNP [dm6]	T	G	6.292e^-5	0.626	DOWNSTREAM CG34175 INTERGENIC
X	5897071	X_5897071_SNP [dm3] X_6003038_SNP [dm6]	T	A	6.299e^-5	0.626	INTRON CR44498
3R	24829734	3R_24829734_SNP [dm3] 3R_29004012_SNP [dm6]	A	G	6.314e^-5	0.626	INTRON wat
2R	14678570	2R_14678570_SNP [dm3] 2R_18791065_SNP [dm6]	C	T	6.328e^-5	0.626	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4341305	3R_4341305_SNP [dm3] 3R_8515583_SNP [dm6]	G	T	6.358e^-5	0.626	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26361338	3R_26361338_SNP [dm3] 3R_30535616_SNP [dm6]	C	A	6.359e^-5	0.626	INTRON tmod
3L	837693	3L_837693_SNP [dm3] 3L_837693_SNP [dm6]	A	C	6.382e^-5	0.626	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	3835090	3L_3835090_INS [dm3] 3L_3835090_INS [dm6]	A	AATATAACTATC...	6.387e^-5	0.626	INTRON enc
3R	4339924	3R_4339924_SNP [dm3] 3R_8514202_SNP [dm6]	A	G	6.424e^-5	0.626	INTERGENIC
3L	1858016	3L_1858016_SNP [dm3] 3L_1858016_SNP [dm6]	A	G	6.438e^-5	0.626	SYNONYMOUS_CODING CG12024	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14905543	2R_14905543_SNP [dm3] 2R_19018038_SNP [dm6]	G	T	6.490e^-5	0.626	INTERGENIC
3L	15376143	3L_15376143_SNP [dm3] 3L_15383043_SNP [dm6]	A	T	6.508e^-5	0.626	INTERGENIC
2R	17892192	2R_17892192_SNP [dm3] 2R_22004687_SNP [dm6]	A	G	6.510e^-5	0.626	INTRON CG34370
3R	3469607	3R_3469607_SNP [dm3] 3R_7643885_SNP [dm6]	C	T	6.518e^-5	0.626	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18202542	3L_18202542_SNP [dm3] 3L_18209442_SNP [dm6]	A	T	6.593e^-5	0.626	INTERGENIC
X	12275928	X_12275928_INS [dm3] X_12381895_INS [dm6]	T	TTTATTA	6.640e^-5	0.626	INTERGENIC
3R	4339621	3R_4339621_SNP [dm3] 3R_8513899_SNP [dm6]	C	G	6.694e^-5	0.626	UPSTREAM Or85c INTERGENIC
2L	16840396	2L_16840396_SNP [dm3] 2L_16840396_SNP [dm6]	T	C	6.724e^-5	0.626	UTR_3_PRIME SclA & 1 other INTRON SclA
3L	13310093	3L_13310093_INS [dm3] 3L_13316993_INS [dm6]	T	TAAGTCTTTTA...	6.764e^-5	0.626	INTERGENIC
X	11409403	X_11409403_SNP [dm3] X_11515370_SNP [dm6]	A	T	6.772e^-5	0.626	INTRON Drak	TF binding site mE1_TFBS_Kr
3L	712399	3L_712399_SNP [dm3] 3L_712399_SNP [dm6]	A	T	6.798e^-5	0.626	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	14919578	3L_14919578_SNP [dm3] 3L_14926478_SNP [dm6]	A	G	6.834e^-5	0.626	UTR_5_PRIME DCX-EMAP INTRON DCX-EMAP
2L	9104800	2L_9104800_SNP [dm3] 2L_9104800_SNP [dm6]	C	T	6.934e^-5	0.626	INTERGENIC
X	11740309	X_11740309_SNP [dm3] X_11846276_SNP [dm6]	C	T	6.934e^-5	0.626	UPSTREAM CG15740 INTERGENIC	TF binding site BDTNP1_TFBS_sna
X	17321351	X_17321351_SNP [dm3] X_17427318_SNP [dm6]	A	G	6.951e^-5	0.626	INTRON CG12994 & 1 other	TF binding site mE1_TFBS_D
3R	10825092	3R_10825092_SNP [dm3] 3R_14999370_SNP [dm6]	T	A	7.029e^-5	0.626	INTERGENIC
2R	19731984	2R_19731984_SNP [dm3] 2R_23844461_SNP [dm6]	T	C	7.035e^-5	0.626	SYNONYMOUS_CODING Snap29 UPSTREAM CG5554	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	3124306	2L_3124306_SNP [dm3] 2L_3124306_SNP [dm6]	A	G	7.053e^-5	0.626	NON_SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_chinmo
2L	5511194	2L_5511194_SNP [dm3] 2L_5511194_SNP [dm6]	A	C	7.065e^-5	0.626	INTERGENIC
2R	15173056	2R_15173056_DEL [dm3] 2R_19285551_DEL [dm6]	AGTCTAACAAAATTAGTA...	A	7.085e^-5	0.626	UTR_3_PRIME CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
X	17952259	X_17952259_SNP [dm3] X_18058226_SNP [dm6]	T	C	7.099e^-5	0.626	INTRON Sh
3L	13310084	3L_13310084_DEL [dm3] 3L_13316984_DEL [dm6]	TA	T	7.100e^-5	0.626	INTERGENIC
2R	19007092	2R_19007092_SNP [dm3] 2R_23119569_SNP [dm6]	G	T	7.114e^-5	0.626	INTERGENIC
3L	4715335	3L_4715335_SNP [dm3] 3L_4715335_SNP [dm6]	T	C	7.163e^-5	0.626	INTRON RhoGEF64C
X	4293464	X_4293464_SNP [dm3] X_4399431_SNP [dm6]	C	G	7.192e^-5	0.626	INTRON CR32773
2L	735370	2L_735370_SNP [dm3] 2L_735370_SNP [dm6]	C	G	7.205e^-5	0.626	INTERGENIC
2R	17892919	2R_17892919_SNP [dm3] 2R_22005414_SNP [dm6]	G	A	7.205e^-5	0.626	INTRON CG34370
2L	17870058	2L_17870058_SNP [dm3] 2L_17870058_SNP [dm6]	G	A	7.231e^-5	0.626	INTRON CadN2	TF binding site mE1_TFBS_HSA
2R	16786743	2R_16786743_SNP [dm3] 2R_20899238_SNP [dm6]	T	C	7.304e^-5	0.626	DOWNSTREAM CR43160 INTRON otp	regulatory region REDfly_CRMs
X	17951830	X_17951830_SNP [dm3] X_18057797_SNP [dm6]	A	C	7.315e^-5	0.626	INTRON Sh
2L	15469662	2L_15469662_SNP [dm3] 2L_15469662_SNP [dm6]	A	T	7.395e^-5	0.626	UPSTREAM CR45353 INTERGENIC
3L	4737909	3L_4737909_SNP [dm3] 3L_4737909_SNP [dm6]	G	A	7.401e^-5	0.626	INTRON RhoGEF64C
3L	413912	3L_413912_SNP [dm3] 3L_413912_SNP [dm6]	C	T	7.411e^-5	0.626	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	9224977	3L_9224977_SNP [dm3] 3L_9231877_SNP [dm6]	C	T	7.414e^-5	0.626	INTERGENIC	TF binding site mE1_TFBS_inv
3L	2646481	3L_2646481_SNP [dm3] 3L_2646481_SNP [dm6]	T	C	7.462e^-5	0.626	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad
2R	11809705	2R_11809705_SNP [dm3] 2R_15922200_SNP [dm6]	G	A	7.504e^-5	0.626	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
2L	5774054	2L_5774054_SNP [dm3] 2L_5774054_SNP [dm6]	A	G	7.655e^-5	0.626	UPSTREAM CG9171 INTRON CG9171	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25894705	3R_25894705_SNP [dm3] 3R_30068983_SNP [dm6]	C	G	7.672e^-5	0.626	INTRON sima
X	7993136	X_7993136_SNP [dm3] X_8099103_SNP [dm6]	C	A	7.697e^-5	0.626	INTRON CG2258	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13415564	2R_13415564_SNP [dm3] 2R_17528059_SNP [dm6]	G	A	7.700e^-5	0.626	SYNONYMOUS_CODING Patronin
3L	14555445	3L_14555445_SNP [dm3] 3L_14562345_SNP [dm6]	A	T	7.771e^-5	0.626	INTRON CG34039	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
2L	9104792	2L_9104792_SNP [dm3] 2L_9104792_SNP [dm6]	A	G	7.776e^-5	0.626	INTERGENIC
3R	24829722	3R_24829722_SNP [dm3] 3R_29004000_SNP [dm6]	T	C	7.780e^-5	0.626	INTRON wat
2R	20658290	2R_20658290_DEL [dm3] 2R_24770767_DEL [dm6]	TG	T	7.793e^-5	0.626	UTR_3_PRIME Eps-15 INTRON Eps-15	TF binding site BDTNP1_TFBS_prd
2R	19484343	2R_19484343_SNP [dm3] 2R_23596820_SNP [dm6]	G	A	7.839e^-5	0.626	INTRON apt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	957305	2L_957305_SNP [dm3] 2L_957305_SNP [dm6]	C	T	7.856e^-5	0.626	SYNONYMOUS_CODING CG4341
3L	4737951	3L_4737951_SNP [dm3] 3L_4737951_SNP [dm6]	C	A	7.858e^-5	0.626	INTRON RhoGEF64C
3L	712423	3L_712423_SNP [dm3] 3L_712423_SNP [dm6]	G	C	7.878e^-5	0.626	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	7.967e^-5	0.628	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	11837704	X_11837704_SNP [dm3] X_11943671_SNP [dm6]	T	A	7.972e^-5	0.628	INTRON cac	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	712226	3L_712226_SNP [dm3] 3L_712226_SNP [dm6]	C	A	8.032e^-5	0.628	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	3697763	2R_3697763_SNP [dm3] 2R_7810258_SNP [dm6]	A	C	8.047e^-5	0.628	NON_SYNONYMOUS_CODING CG1550 DOWNSTREAM sax	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	12355297	X_12355297_SNP [dm3] X_12461264_SNP [dm6]	C	A	8.078e^-5	0.628	INTRON Rab40
2R	3178769	2R_3178769_SNP [dm3] 2R_7291264_SNP [dm6]	G	A	8.132e^-5	0.63	INTRON pwn	TF binding site mE1_TFBS_cad
2R	15874958	2R_15874958_SNP [dm3] 2R_19987453_SNP [dm6]	G	A	8.166e^-5	0.63	INTERGENIC
2L	2791680	2L_2791680_DEL [dm3] 2L_2791680_DEL [dm6]	TGT	T	8.215e^-5	0.63	INTRON Syt1
3L	20198791	3L_20198791_SNP [dm3] 3L_20205691_SNP [dm6]	C	T	8.306e^-5	0.63	SYNONYMOUS_CODING CG7290	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5694802	3L_5694802_SNP [dm3] 3L_5701702_SNP [dm6]	T	G	8.310e^-5	0.63	INTRON sif
2L	10565818	2L_10565818_SNP [dm3] 2L_10565818_SNP [dm6]	A	T	8.312e^-5	0.63	INTRON Trim9
2R	14018530	2R_14018530_SNP [dm3] 2R_18131025_SNP [dm6]	T	C	8.344e^-5	0.63	SYNONYMOUS_CODING Hsf DOWNSTREAM Dip3
2L	16619019	2L_16619019_SNP [dm3] 2L_16619019_SNP [dm6]	T	A	8.381e^-5	0.63	INTRON CG42389	TF binding site BDTNP1_TFBS_dl
3L	2683655	3L_2683655_SNP [dm3] 3L_2683655_SNP [dm6]	A	G	8.574e^-5	0.63	INTRON Fife
3L	1734509	3L_1734509_SNP [dm3] 3L_1734509_SNP [dm6]	G	A	8.613e^-5	0.63	SYNONYMOUS_CODING Oseg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	16180475	2L_16180475_SNP [dm3] 2L_16180475_SNP [dm6]	T	A	8.615e^-5	0.63	INTRON Ca-alpha1D
2R	13442607	2R_13442607_SNP [dm3] 2R_17555102_SNP [dm6]	C	T	8.619e^-5	0.63	SYNONYMOUS_CODING MESR4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16325122	3L_16325122_SNP [dm3] 3L_16332022_SNP [dm6]	A	G	8.721e^-5	0.63	DOWNSTREAM CG33061 & 1 other INTRON retinin	TF binding site mE1_TFBS_cad
X	18264596	X_18264596_SNP [dm3] X_18370563_SNP [dm6]	A	G	8.756e^-5	0.63	UPSTREAM CrebB & 1 other INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Trl
X	5594395	X_5594395_SNP [dm3] X_5700362_SNP [dm6]	G	T	8.797e^-5	0.63	INTRON CG4096
3L	712388	3L_712388_DEL [dm3] 3L_712388_DEL [dm6]	AAT	A	8.802e^-5	0.63	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	11236463	X_11236463_SNP [dm3] X_11342430_SNP [dm6]	C	G	8.829e^-5	0.63	INTRON CG34348
X	11121667	X_11121667_SNP [dm3] X_11227634_SNP [dm6]	T	C	8.862e^-5	0.63	INTRON CG44422
X	17952258	X_17952258_SNP [dm3] X_18058225_SNP [dm6]	C	A	8.897e^-5	0.63	INTRON Sh
X	12355375	X_12355375_SNP [dm3] X_12461342_SNP [dm6]	T	C	8.947e^-5	0.63	INTRON Rab40
3L	10331750	3L_10331750_INS [dm3] 3L_10338650_INS [dm6]	A	AA	8.953e^-5	0.63	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	3079481	2R_3079481_SNP [dm3] 2R_7191976_SNP [dm6]	T	G	8.980e^-5	0.63	INTRON pk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5226051	2R_5226051_SNP [dm3] 2R_9338546_SNP [dm6]	C	T	8.997e^-5	0.63	INTRON CG13954 & 1 other
3R	5448651	3R_5448651_SNP [dm3] 3R_9622929_SNP [dm6]	A	T	9.038e^-5	0.63	UPSTREAM CG8312 INTRON CG8312
3L	3966618	3L_3966618_DEL [dm3] 3L_3966618_DEL [dm6]	CCGCTGTCC	C	9.050e^-5	0.63	INTERGENIC
2R	6425879	2R_6425879_SNP [dm3] 2R_10538374_SNP [dm6]	A	G	9.061e^-5	0.63	INTRON lola	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	1239214	2L_1239214_SNP [dm3] 2L_1239214_SNP [dm6]	C	T	9.095e^-5	0.63	UPSTREAM CG5397 INTERGENIC
3L	1858022	3L_1858022_SNP [dm3] 3L_1858022_SNP [dm6]	C	T	9.180e^-5	0.63	SYNONYMOUS_CODING CG12024	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1858401	3L_1858401_SNP [dm3] 3L_1858401_SNP [dm6]	A	G	9.180e^-5	0.63	UTR_3_PRIME CG12024 DOWNSTREAM R	TF binding site mE1_TFBS_cad
3L	1731975	3L_1731975_SNP [dm3] 3L_1731975_SNP [dm6]	C	T	9.180e^-5	0.63	SYNONYMOUS_CODING Oseg4 UPSTREAM drpr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12754344	X_12754344_INS [dm3] X_12860311_INS [dm6]	T	TT	9.207e^-5	0.63	INTRON Pde9
X	5115825	X_5115825_SNP [dm3] X_5221792_SNP [dm6]	A	G	9.270e^-5	0.63	INTRON CG15465 & 1 other
2R	13415561	2R_13415561_SNP [dm3] 2R_17528056_SNP [dm6]	A	G	9.357e^-5	0.63	SYNONYMOUS_CODING Patronin
2L	2669602	2L_2669602_SNP [dm3] 2L_2669602_SNP [dm6]	G	T	9.358e^-5	0.63	UPSTREAM Gr23a INTERGENIC
2L	19802428	2L_19802428_SNP [dm3] 2L_19802428_SNP [dm6]	A	G	9.391e^-5	0.63	INTRON sick
3R	17455708	3R_17455708_SNP [dm3] 3R_21629986_SNP [dm6]	G	T	9.435e^-5	0.63	INTRON E2f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	25588806	3R_25588806_SNP [dm3] 3R_29763084_SNP [dm6]	A	G	9.470e^-5	0.63	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	712337	3L_712337_SNP [dm3] 3L_712337_SNP [dm6]	G	T	9.519e^-5	0.63	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	4391378	3R_4391378_SNP [dm3] 3R_8565656_SNP [dm6]	G	C	9.555e^-5	0.63	NON_SYNONYMOUS_CODING Cenp-C	TF binding site mE1_TFBS_inv mE1_TFBS_sens
X	17952247	X_17952247_SNP [dm3] X_18058214_SNP [dm6]	A	C	9.561e^-5	0.63	INTRON Sh
X	17311115	X_17311115_SNP [dm3] X_17417082_SNP [dm6]	G	A	9.599e^-5	0.63	INTRON CG8611	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7065817	2R_7065817_SNP [dm3] 2R_11178312_SNP [dm6]	T	C	9.600e^-5	0.63	INTRON shn	TF binding site mE1_TFBS_inv
3L	18575735	3L_18575735_SNP [dm3] 3L_18582635_SNP [dm6]	C	A	9.601e^-5	0.63	UPSTREAM CR45435 INTERGENIC
X	11236460	X_11236460_SNP [dm3] X_11342427_SNP [dm6]	C	T	9.634e^-5	0.63	INTRON CG34348
3L	10756244	3L_10756244_SNP [dm3] 3L_10763144_SNP [dm6]	A	G	9.676e^-5	0.63	INTERGENIC
X	16149242	X_16149242_SNP [dm3] X_16255209_SNP [dm6]	G	A	9.717e^-5	0.63	DOWNSTREAM snRNA:U2:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8588349	2L_8588349_SNP [dm3] 2L_8588349_SNP [dm6]	C	A	9.717e^-5	0.63	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	20733104	X_20733104_SNP [dm3] X_20862077_SNP [dm6]	A	G	9.848e^-5	0.63	INTRON shakB
2L	7100238	2L_7100238_INS [dm3] 2L_7100238_INS [dm6]	G	GG	9.907e^-5	0.63	INTRON Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	7718985	2L_7718985_SNP [dm3] 2L_7718985_SNP [dm6]	T	A	9.937e^-5	0.63	SYNONYMOUS_CODING CG13793 DOWNSTREAM CG13794
2R	9880313	2R_9880313_DEL [dm3] 2R_13992808_DEL [dm6]	TT	T	9.938e^-5	0.63	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	6788786	X_6788786_SNP [dm3] X_6894753_SNP [dm6]	A	C	9.950e^-5	0.63	INTERGENIC
2L	17891639	2L_17891639_SNP [dm3] 2L_17891639_SNP [dm6]	A	C	9.982e^-5	0.63	INTERGENIC
3L	14561384	3L_14561384_SNP [dm3] 3L_14568284_SNP [dm6]	G	A	1.002e^-4	0.63	DOWNSTREAM CG42758 INTERGENIC
3L	22883797	3L_22883797_SNP [dm3] 3L_22890697_SNP [dm6]	A	G	1.003e^-4	0.63	INTRON slif	transposable element FlyBase
2L	17887868	2L_17887868_SNP [dm3] 2L_17887868_SNP [dm6]	A	T	1.004e^-4	0.63	INTERGENIC
X	9287766	X_9287766_SNP [dm3] X_9393733_SNP [dm6]	T	C	1.009e^-4	0.63	INTRON mgl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	15101654	3R_15101654_DEL [dm3] 3R_19275932_DEL [dm6]	AA	A	1.010e^-4	0.63	INTERGENIC
3L	2645886	3L_2645886_SNP [dm3] 3L_2645886_SNP [dm6]	C	A	1.011e^-4	0.63	NON_SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14489354	3L_14489354_SNP [dm3] 3L_14496254_SNP [dm6]	T	A	1.019e^-4	0.63	INTRON bbg	TF binding site mE1_TFBS_cad
3L	1731091	3L_1731091_SNP [dm3] 3L_1731091_SNP [dm6]	C	T	1.023e^-4	0.63	UTR_5_PRIME drpr UTR_3_PRIME Oseg4 DOWNSTREAM Oseg4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2660003	2L_2660003_SNP [dm3] 2L_2660003_SNP [dm6]	T	A	1.034e^-4	0.63	INTERGENIC
3L	1565411	3L_1565411_SNP [dm3] 3L_1565411_SNP [dm6]	C	T	1.034e^-4	0.63	START_GAINED CG12003 UTR_5_PRIME CG12003 INTRON CG7879	TF binding site mE1_TFBS_sens
3L	1727047	3L_1727047_SNP [dm3] 3L_1727047_SNP [dm6]	G	A	1.035e^-4	0.63	INTRON drpr
2R	14678243	2R_14678243_SNP [dm3] 2R_18790738_SNP [dm6]	A	T	1.037e^-4	0.63	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17789776	2L_17789776_SNP [dm3] 2L_17789776_SNP [dm6]	T	A	1.044e^-4	0.63	INTRON CadN2
2R	15874982	2R_15874982_SNP [dm3] 2R_19987477_SNP [dm6]	C	T	1.048e^-4	0.63	INTERGENIC
2L	11120850	2L_11120850_SNP [dm3] 2L_11120850_SNP [dm6]	G	T	1.049e^-4	0.63	SYNONYMOUS_CODING CG14921 UPSTREAM CG6230	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19553902	2R_19553902_SNP [dm3] 2R_23666379_SNP [dm6]	G	C	1.049e^-4	0.63	UPSTREAM Pde8 INTRON Pde8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	20223679	2R_20223679_SNP [dm3] 2R_24336156_SNP [dm6]	G	A	1.051e^-4	0.63	UPSTREAM CR44282 INTERGENIC
2L	15960063	2L_15960063_SNP [dm3] 2L_15960063_SNP [dm6]	G	A	1.053e^-4	0.63	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
3R	14607643	3R_14607643_SNP [dm3] 3R_18781921_SNP [dm6]	C	T	1.060e^-4	0.63	INTRON CG7720
X	18265153	X_18265153_SNP [dm3] X_18371120_SNP [dm6]	G	T	1.062e^-4	0.63	UTR_5_PRIME CrebB UPSTREAM CrebB INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	1726825	3L_1726825_INS [dm3] 3L_1726825_INS [dm6]	A	AA	1.065e^-4	0.63	INTRON drpr
3L	14919557	3L_14919557_SNP [dm3] 3L_14926457_SNP [dm6]	T	G	1.068e^-4	0.63	UTR_5_PRIME DCX-EMAP INTRON DCX-EMAP	TF binding site mE1_TFBS_cad
3L	6290110	3L_6290110_SNP [dm3] 3L_6297010_SNP [dm6]	C	G	1.077e^-4	0.63	INTERGENIC
2R	18733703	2R_18733703_SNP [dm3] 2R_22846180_SNP [dm6]	C	A	1.086e^-4	0.63	SYNONYMOUS_CODING CG3649	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5413156	2L_5413156_SNP [dm3] 2L_5413156_SNP [dm6]	A	G	1.087e^-4	0.63	SYNONYMOUS_CODING H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7467554	3L_7467554_SNP [dm3] 3L_7474454_SNP [dm6]	G	A	1.092e^-4	0.63	INTERGENIC
3L	16202260	3L_16202260_SNP [dm3] 3L_16209160_SNP [dm6]	A	C	1.097e^-4	0.63	INTERGENIC	TF binding site mE1_TFBS_cad
3L	15625591	3L_15625591_INS [dm3] 3L_15632491_INS [dm6]	T	TT	1.108e^-4	0.63	UTR_5_PRIME comm3 INTRON comm3
3L	712377	3L_712377_SNP [dm3] 3L_712377_SNP [dm6]	A	C	1.110e^-4	0.63	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	15639667	3L_15639667_SNP [dm3] 3L_15646567_SNP [dm6]	C	G	1.118e^-4	0.63	INTRON comm3
3L	16202254	3L_16202254_SNP [dm3] 3L_16209154_SNP [dm6]	C	T	1.125e^-4	0.63	INTERGENIC	TF binding site mE1_TFBS_cad
3L	15693061	3L_15693061_SNP [dm3] 3L_15699961_SNP [dm6]	C	T	1.126e^-4	0.63	UPSTREAM comm2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16891248	3R_16891248_SNP [dm3] 3R_21065526_SNP [dm6]	C	T	1.131e^-4	0.63	UPSTREAM AnxB9 INTRON AnxB9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	6373944	3L_6373944_SNP [dm3] 3L_6380844_SNP [dm6]	A	C	1.134e^-4	0.63	INTERGENIC
2L	7002230	2L_7002230_SNP [dm3] 2L_7002230_SNP [dm6]	C	A	1.134e^-4	0.63	INTRON uif
2L	15959973	2L_15959973_SNP [dm3] 2L_15959973_SNP [dm6]	G	A	1.138e^-4	0.63	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
3L	20721773	3L_20721773_SNP [dm3] 3L_20728673_SNP [dm6]	T	C	1.138e^-4	0.63	DOWNSTREAM CR43945 INTERGENIC
3R	5129982	3R_5129982_SNP [dm3] 3R_9304260_SNP [dm6]	C	G	1.139e^-4	0.63	INTRON CG8861
3L	1732791	3L_1732791_SNP [dm3] 3L_1732791_SNP [dm6]	A	G	1.142e^-4	0.63	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14859049	X_14859049_INS [dm3] X_14965016_INS [dm6]	C	CTATAAATTTGC...	1.145e^-4	0.63	INTRON eag
3R	27136518	3R_27136518_SNP [dm3] 3R_31310796_SNP [dm6]	T	A	1.149e^-4	0.63	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	24486158	3R_24486158_SNP [dm3] 3R_28660436_SNP [dm6]	C	T	1.156e^-4	0.63	INTERGENIC
3R	27189893	3R_27189893_SNP [dm3] 3R_31364171_SNP [dm6]	G	A	1.167e^-4	0.63	INTRON CG34347
2R	11809811	2R_11809811_SNP [dm3] 2R_15922306_SNP [dm6]	T	C	1.170e^-4	0.63	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
2L	9111772	2L_9111772_SNP [dm3] 2L_9111772_SNP [dm6]	G	C	1.172e^-4	0.63	UPSTREAM Or30a INTERGENIC
3R	16891371	3R_16891371_SNP [dm3] 3R_21065649_SNP [dm6]	G	T	1.179e^-4	0.63	UPSTREAM AnxB9 INTRON AnxB9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	19553891	2R_19553891_SNP [dm3] 2R_23666368_SNP [dm6]	C	T	1.182e^-4	0.63	UPSTREAM Pde8 INTRON Pde8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	15272294	2L_15272294_SNP [dm3] 2L_15272294_SNP [dm6]	G	T	1.184e^-4	0.63	UPSTREAM Cul3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	5446560	3R_5446560_DEL [dm3] 3R_9620838_DEL [dm6]	AAAACAGTGG	A	1.188e^-4	0.63	INTRON CG8312
2R	15903063	2R_15903063_SNP [dm3] 2R_20015558_SNP [dm6]	A	C	1.189e^-4	0.63	DOWNSTREAM CR44629 & 1 other INTERGENIC
3L	16202299	3L_16202299_SNP [dm3] 3L_16209199_SNP [dm6]	C	T	1.191e^-4	0.63	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9513593	3L_9513593_SNP [dm3] 3L_9520493_SNP [dm6]	G	T	1.194e^-4	0.63	INTRON CG33700
2L	9103236	2L_9103236_SNP [dm3] 2L_9103236_SNP [dm6]	C	T	1.232e^-4	0.63	INTERGENIC
X	14678764	X_14678764_SNP [dm3] X_14784731_SNP [dm6]	A	C	1.234e^-4	0.63	UTR_3_PRIME Ag5r UPSTREAM Ag5r2 DOWNSTREAM Ag5r
2L	19898638	2L_19898638_SNP [dm3] 2L_19898638_SNP [dm6]	G	A	1.238e^-4	0.63	INTRON sick
2L	13738470	2L_13738470_SNP [dm3] 2L_13738470_SNP [dm6]	G	A	1.238e^-4	0.63	INTERGENIC
3R	14854201	3R_14854201_SNP [dm3] 3R_19028479_SNP [dm6]	C	T	1.247e^-4	0.63	NON_SYNONYMOUS_CODING gatA UPSTREAM P5cr DOWNSTREAM NP15.6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1705378	3R_1705378_SNP [dm3] 3R_5879656_SNP [dm6]	T	G	1.248e^-4	0.63	SYNONYMOUS_CODING CG34113 INTRON CG34113
2L	4624701	2L_4624701_SNP [dm3] 2L_4624701_SNP [dm6]	C	T	1.249e^-4	0.63	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6377612	X_6377612_SNP [dm3] X_6483579_SNP [dm6]	A	G	1.262e^-4	0.63	INTRON CG42340
X	20262270	X_20262270_INS [dm3] X_20391243_INS [dm6]	A	ATCAATAATAATTCAA...	1.263e^-4	0.63	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27136665	3R_27136665_SNP [dm3] 3R_31310943_SNP [dm6]	G	A	1.264e^-4	0.63	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	1732632	3L_1732632_SNP [dm3] 3L_1732632_SNP [dm6]	A	G	1.269e^-4	0.63	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14688485	2R_14688485_SNP [dm3] 2R_18800980_SNP [dm6]	A	C	1.270e^-4	0.63	INTRON l_2_08717	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8397333	3R_8397333_SNP [dm3] 3R_12571611_SNP [dm6]	A	G	1.271e^-4	0.63	INTRON Octbeta2R
2R	16565617	2R_16565617_SNP [dm3] 2R_20678112_SNP [dm6]	C	A	1.274e^-4	0.63	INTERGENIC
2R	15180312	2R_15180312_SNP [dm3] 2R_19292807_SNP [dm6]	A	T	1.276e^-4	0.63	UTR_5_PRIME Tab2 UPSTREAM mip40	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	16890117	3R_16890117_DEL [dm3] 3R_21064395_DEL [dm6]	TAA	T	1.279e^-4	0.63	UTR_5_PRIME Cortactin UPSTREAM AnxB9 INTRON Cortactin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2L	7100231	2L_7100231_SNP [dm3] 2L_7100231_SNP [dm6]	T	G	1.284e^-4	0.63	INTRON Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	11837673	X_11837673_SNP [dm3] X_11943640_SNP [dm6]	G	C	1.293e^-4	0.63	INTRON cac	TF binding site BDTNP1_TFBS_dl
X	13828560	X_13828560_SNP [dm3] X_13934527_SNP [dm6]	C	A	1.296e^-4	0.63	INTRON mamo	TF binding site mE1_TFBS_HSA
3L	14816333	3L_14816333_SNP [dm3] 3L_14823233_SNP [dm6]	G	A	1.299e^-4	0.63	INTRON CG17839
3L	11167610	3L_11167610_SNP [dm3] 3L_11174510_SNP [dm6]	A	T	1.302e^-4	0.63	INTRON CG14142
3R	11807873	3R_11807873_SNP [dm3] 3R_15982151_SNP [dm6]	G	A	1.308e^-4	0.63	SYNONYMOUS_CODING Hel89B	TF binding site mE1_TFBS_cad
3L	2645491	3L_2645491_SNP [dm3] 3L_2645491_SNP [dm6]	A	T	1.310e^-4	0.63	INTRON CG1143
3L	14816170	3L_14816170_SNP [dm3] 3L_14823070_SNP [dm6]	A	T	1.314e^-4	0.63	INTRON CG17839
2L	17887768	2L_17887768_SNP [dm3] 2L_17887768_SNP [dm6]	G	A	1.314e^-4	0.63	INTERGENIC
X	16708811	X_16708811_SNP [dm3] X_16814778_SNP [dm6]	C	T	1.319e^-4	0.63	DOWNSTREAM CR44129 INTRON CG4829	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5750511	3R_5750511_SNP [dm3] 3R_9924789_SNP [dm6]	T	C	1.321e^-4	0.63	INTRON Glut4EF
2L	15960200	2L_15960200_SNP [dm3] 2L_15960200_SNP [dm6]	C	G	1.322e^-4	0.63	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
3L	14832054	3L_14832054_SNP [dm3] 3L_14838954_SNP [dm6]	A	T	1.324e^-4	0.63	INTRON CG17839
X	16490344	X_16490344_SNP [dm3] X_16596311_SNP [dm6]	A	C	1.324e^-4	0.63	UTR_3_PRIME CG9784 DOWNSTREAM crl & 1 other
2R	14678576	2R_14678576_SNP [dm3] 2R_18791071_SNP [dm6]	C	A	1.324e^-4	0.63	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	638038	2L_638038_SNP [dm3] 2L_638038_SNP [dm6]	G	C	1.326e^-4	0.63	INTERGENIC
X	5229317	X_5229317_SNP [dm3] X_5335284_SNP [dm6]	C	T	1.331e^-4	0.63	DOWNSTREAM CanB INTERGENIC
X	16149243	X_16149243_SNP [dm3] X_16255210_SNP [dm6]	C	A	1.333e^-4	0.63	DOWNSTREAM snRNA:U2:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10310673	3R_10310673_SNP [dm3] 3R_14484951_SNP [dm6]	C	A	1.333e^-4	0.63	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	15067015	3L_15067015_SNP [dm3] 3L_15073915_SNP [dm6]	C	G	1.341e^-4	0.63	INTRON cp309
3L	14814091	3L_14814091_SNP [dm3] 3L_14820991_SNP [dm6]	G	A	1.346e^-4	0.63	INTRON CG17839
3L	14814092	3L_14814092_SNP [dm3] 3L_14820992_SNP [dm6]	T	A	1.346e^-4	0.63	INTRON CG17839
2R	12806871	2R_12806871_SNP [dm3] 2R_16919366_SNP [dm6]	T	C	1.346e^-4	0.63	INTERGENIC
X	12937100	X_12937100_SNP [dm3] X_13043067_SNP [dm6]	G	A	1.347e^-4	0.63	INTRON rad
3L	14489373	3L_14489373_SNP [dm3] 3L_14496273_SNP [dm6]	C	T	1.349e^-4	0.63	INTRON bbg	TF binding site mE1_TFBS_cad
X	10543785	X_10543785_SNP [dm3] X_10649752_SNP [dm6]	T	C	1.351e^-4	0.63	INTRON X11Lbeta
3R	4020520	3R_4020520_DEL [dm3] 3R_8194798_DEL [dm6]	CAAC	C	1.355e^-4	0.63	INTERGENIC
2L	19841437	2L_19841437_SNP [dm3] 2L_19841437_SNP [dm6]	G	A	1.356e^-4	0.63	INTRON sick
3L	6687393	3L_6687393_SNP [dm3] 3L_6694293_SNP [dm6]	C	G	1.360e^-4	0.63	INTRON SP1173
2L	2863631	2L_2863631_SNP [dm3] 2L_2863631_SNP [dm6]	G	T	1.361e^-4	0.63	INTRON CG2991	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9441548	X_9441548_SNP [dm3] X_9547515_SNP [dm6]	T	G	1.368e^-4	0.63	INTRON CG32700
X	12355383	X_12355383_SNP [dm3] X_12461350_SNP [dm6]	T	A	1.369e^-4	0.63	INTRON Rab40
X	12355400	X_12355400_SNP [dm3] X_12461367_SNP [dm6]	A	T	1.370e^-4	0.63	INTRON Rab40
3R	5447308	3R_5447308_SNP [dm3] 3R_9621586_SNP [dm6]	G	T	1.376e^-4	0.63	NON_SYNONYMOUS_CODING CG8312	TF binding site mE1_TFBS_cad
2L	1598629	2L_1598629_SNP [dm3] 2L_1598629_SNP [dm6]	C	T	1.376e^-4	0.63	INTRON haf & 1 other
3L	14835301	3L_14835301_SNP [dm3] 3L_14842201_SNP [dm6]	T	A	1.376e^-4	0.63	INTRON CG17839
2L	16875116	2L_16875116_SNP [dm3] 2L_16875116_SNP [dm6]	C	T	1.382e^-4	0.63	INTRON CR31781
X	5256720	X_5256720_SNP [dm3] X_5362687_SNP [dm6]	C	T	1.382e^-4	0.63	INTRON SK
2R	18475339	2R_18475339_SNP [dm3] 2R_22587834_SNP [dm6]	A	C	1.387e^-4	0.63	INTRON dnr1
2R	18475340	2R_18475340_SNP [dm3] 2R_22587835_SNP [dm6]	G	A	1.387e^-4	0.63	INTRON dnr1
3L	712374	3L_712374_SNP [dm3] 3L_712374_SNP [dm6]	G	C	1.392e^-4	0.63	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	12355350	X_12355350_SNP [dm3] X_12461317_SNP [dm6]	T	C	1.392e^-4	0.63	INTRON Rab40
2R	16388595	2R_16388595_SNP [dm3] 2R_20501090_SNP [dm6]	A	C	1.394e^-4	0.63	INTERGENIC	regulatory region REDfly_CRMs
3L	6688251	3L_6688251_INS [dm3] 3L_6695151_INS [dm6]	G	GACGGCTTTGCCG...	1.395e^-4	0.63	INTRON SP1173
X	5229448	X_5229448_SNP [dm3] X_5335415_SNP [dm6]	C	T	1.400e^-4	0.63	DOWNSTREAM CanB INTERGENIC
3R	24412419	3R_24412419_SNP [dm3] 3R_28586697_SNP [dm6]	G	A	1.415e^-4	0.63	EXON MRE23	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
3R	10303359	3R_10303359_SNP [dm3] 3R_14477637_SNP [dm6]	T	C	1.416e^-4	0.63	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens
2L	268796	2L_268796_DEL [dm3] 2L_268796_DEL [dm6]	AA	A	1.417e^-4	0.63	UPSTREAM CG3345 INTRON CG3645
X	2926643	X_2926643_SNP [dm3] X_3032610_SNP [dm6]	C	T	1.417e^-4	0.63	INTRON kirre
3L	1733205	3L_1733205_SNP [dm3] 3L_1733205_SNP [dm6]	C	T	1.420e^-4	0.63	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	17321363	X_17321363_SNP [dm3] X_17427330_SNP [dm6]	A	C	1.421e^-4	0.63	INTRON CG12994 & 1 other	TF binding site mE1_TFBS_D
2L	14222122	2L_14222122_SNP [dm3] 2L_14222122_SNP [dm6]	A	C	1.424e^-4	0.63	INTRON Dyrk2
X	17404785	X_17404785_SNP [dm3] X_17510752_SNP [dm6]	A	T	1.426e^-4	0.63	INTRON CG43658
3L	15741827	3L_15741827_SNP [dm3] 3L_15748727_SNP [dm6]	T	C	1.427e^-4	0.63	DOWNSTREAM CR45240 INTERGENIC
3L	12424236	3L_12424236_SNP [dm3] 3L_12431136_SNP [dm6]	G	T	1.428e^-4	0.63	INTRON toe
X	2926636	X_2926636_SNP [dm3] X_3032603_SNP [dm6]	T	A	1.429e^-4	0.63	INTRON kirre
2L	957326	2L_957326_SNP [dm3] 2L_957326_SNP [dm6]	G	C	1.431e^-4	0.63	SYNONYMOUS_CODING CG4341
3R	12080176	3R_12080176_SNP [dm3] 3R_16254454_SNP [dm6]	G	C	1.434e^-4	0.63	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	7993142	X_7993142_SNP [dm3] X_8099109_SNP [dm6]	T	A	1.440e^-4	0.63	INTRON CG2258	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5897088	X_5897088_SNP [dm3] X_6003055_SNP [dm6]	A	C	1.442e^-4	0.63	INTRON CR44498
3L	13487564	3L_13487564_SNP [dm3] 3L_13494464_SNP [dm6]	G	T	1.445e^-4	0.63	INTRON Tgi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	7064489	2R_7064489_SNP [dm3] 2R_11176984_SNP [dm6]	C	G	1.450e^-4	0.63	INTRON shn
2L	1598680	2L_1598680_SNP [dm3] 2L_1598680_SNP [dm6]	C	A	1.454e^-4	0.63	INTRON haf & 1 other
2R	14075701	2R_14075701_SNP [dm3] 2R_18188196_SNP [dm6]	G	C	1.456e^-4	0.63	NON_SYNONYMOUS_CODING CG14499 UPSTREAM CG14500 INTRON CG33958	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	4350226	3R_4350226_SNP [dm3] 3R_8524504_SNP [dm6]	C	T	1.458e^-4	0.63	SYNONYMOUS_CODING CG31259 DOWNSTREAM CG31454
X	17951829	X_17951829_SNP [dm3] X_18057796_SNP [dm6]	A	C	1.460e^-4	0.63	INTRON Sh
3L	7247861	3L_7247861_SNP [dm3] 3L_7254761_SNP [dm6]	G	A	1.476e^-4	0.63	INTRON CG14830
3L	6710275	3L_6710275_SNP [dm3] 3L_6717175_SNP [dm6]	G	A	1.477e^-4	0.63	INTRON ple	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	10517804	X_10517804_SNP [dm3] X_10623771_SNP [dm6]	A	G	1.481e^-4	0.63	UTR_3_PRIME CG9806 UPSTREAM Rab9Db
3L	12223155	3L_12223155_SNP [dm3] 3L_12230055_SNP [dm6]	A	T	1.482e^-4	0.63	INTRON app
3L	11532947	3L_11532947_SNP [dm3] 3L_11539847_SNP [dm6]	A	G	1.484e^-4	0.63	INTRON Mob2
3R	26318780	3R_26318780_SNP [dm3] 3R_30493058_SNP [dm6]	C	G	1.488e^-4	0.63	SYNONYMOUS_CODING PH4alphaMP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	11756922	X_11756922_SNP [dm3] X_11862889_SNP [dm6]	T	A	1.489e^-4	0.63	INTRON ATP7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	711790	3L_711790_SNP [dm3] 3L_711790_SNP [dm6]	A	T	1.492e^-4	0.63	UTR_5_PRIME CG13896	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	27100391	3R_27100391_DEL [dm3] 3R_31274669_DEL [dm6]	AA	A	1.499e^-4	0.63	INTERGENIC
3R	15072766	3R_15072766_INS [dm3] 3R_19247044_INS [dm6]	A	ACCATAACTTAGAGGACCA...	1.504e^-4	0.63	UPSTREAM unc79 DOWNSTREAM CG5217 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18780272	3R_18780272_SNP [dm3] 3R_22954550_SNP [dm6]	A	G	1.507e^-4	0.63	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	20262315	X_20262315_DEL [dm3] X_20391288_DEL [dm6]	TGATGTTTCTTAT...	T	1.512e^-4	0.63	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4094154	X_4094154_SNP [dm3] X_4200121_SNP [dm6]	C	T	1.515e^-4	0.63	INTRON Fas2	TF binding site BDTNP1_TFBS_dl
X	16018109	X_16018109_SNP [dm3] X_16124076_SNP [dm6]	C	G	1.524e^-4	0.63	INTRON disco-r	TF binding site mE1_TFBS_inv
3R	27136626	3R_27136626_SNP [dm3] 3R_31310904_SNP [dm6]	G	T	1.524e^-4	0.63	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	14689608	2L_14689608_SNP [dm3] 2L_14689608_SNP [dm6]	A	G	1.529e^-4	0.63	UPSTREAM osp INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	13506030	2R_13506030_SNP [dm3] 2R_17618525_SNP [dm6]	C	A	1.530e^-4	0.63	UPSTREAM CG44403 INTRON CG10936
3L	14813879	3L_14813879_SNP [dm3] 3L_14820779_SNP [dm6]	A	T	1.534e^-4	0.63	INTRON CG17839
X	8291487	X_8291487_SNP [dm3] X_8397454_SNP [dm6]	T	A	1.535e^-4	0.63	UTR_3_PRIME CG15345
3R	18088167	3R_18088167_SNP [dm3] 3R_22262445_SNP [dm6]	T	C	1.536e^-4	0.63	INTRON SKIP
2R	17894705	2R_17894705_SNP [dm3] 2R_22007200_SNP [dm6]	C	T	1.539e^-4	0.63	INTRON CG34370
2R	11736242	2R_11736242_SNP [dm3] 2R_15848737_SNP [dm6]	A	T	1.542e^-4	0.63	UTR_5_PRIME tun
2R	18918736	2R_18918736_SNP [dm3] 2R_23031213_SNP [dm6]	T	C	1.545e^-4	0.63	INTRON twi & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	15071621	3R_15071621_SNP [dm3] 3R_19245899_SNP [dm6]	C	T	1.551e^-4	0.63	INTRON unc79
3L	20627024	3L_20627024_SNP [dm3] 3L_20633924_SNP [dm6]	G	T	1.552e^-4	0.63	UPSTREAM CR44682 DOWNSTREAM CR44681 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	3154205	X_3154205_INS [dm3] X_3260172_INS [dm6]	G	GAC	1.557e^-4	0.63	INTRON dnc
3L	7369219	3L_7369219_SNP [dm3] 3L_7376119_SNP [dm6]	G	C	1.570e^-4	0.63	INTRON SMSr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	12282201	2R_12282201_SNP [dm3] 2R_16394696_SNP [dm6]	C	G	1.571e^-4	0.63	INTRON Sema-2b
X	10287553	X_10287553_SNP [dm3] X_10393520_SNP [dm6]	T	C	1.573e^-4	0.63	INTRON flw
2R	20223669	2R_20223669_SNP [dm3] 2R_24336146_SNP [dm6]	A	G	1.587e^-4	0.63	UPSTREAM CR44282 INTERGENIC
X	18262665	X_18262665_SNP [dm3] X_18368632_SNP [dm6]	T	G	1.590e^-4	0.63	INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	22315276	X_22315276_SNP [dm3] X_22913440_SNP [dm6]	T	A	1.591e^-4	0.63	INTERGENIC
2L	12207911	2L_12207911_SNP [dm3] 2L_12207911_SNP [dm6]	T	A	1.597e^-4	0.63	UTR_5_PRIME CG31759 UPSTREAM CG31759 INTRON aret
2L	7097602	2L_7097602_SNP [dm3] 2L_7097602_SNP [dm6]	C	G	1.598e^-4	0.63	DOWNSTREAM Pvf3 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19262617	2R_19262617_SNP [dm3] 2R_23375094_SNP [dm6]	T	G	1.605e^-4	0.63	NON_SYNONYMOUS_CODING Golgin245	TF binding site mE1_TFBS_cad
X	14908012	X_14908012_SNP [dm3] X_15013979_SNP [dm6]	G	A	1.607e^-4	0.63	SPLICE_SITE_REGION hiw INTRON hiw	TF binding site mE1_TFBS_chinmo
2L	9463956	2L_9463956_SNP [dm3] 2L_9463956_SNP [dm6]	C	A	1.609e^-4	0.63	UTR_3_PRIME numb DOWNSTREAM numb
3R	27125093	3R_27125093_SNP [dm3] 3R_31299371_SNP [dm6]	G	T	1.611e^-4	0.63	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	13533166	2R_13533166_SNP [dm3] 2R_17645661_SNP [dm6]	C	G	1.614e^-4	0.63	INTERGENIC
2R	19553962	2R_19553962_SNP [dm3] 2R_23666439_SNP [dm6]	G	A	1.626e^-4	0.63	UPSTREAM Pde8 INTRON Pde8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	13772991	2R_13772991_SNP [dm3] 2R_17885486_SNP [dm6]	C	T	1.634e^-4	0.63	INTRON Elk
X	4093930	X_4093930_SNP [dm3] X_4199897_SNP [dm6]	T	C	1.634e^-4	0.63	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	26618541	3R_26618541_SNP [dm3] 3R_30792819_SNP [dm6]	A	G	1.634e^-4	0.63	SYNONYMOUS_CODING wts	TF binding site mE1_TFBS_chinmo
2R	9147435	2R_9147435_SNP [dm3] 2R_13259930_SNP [dm6]	T	A	1.640e^-4	0.63	UPSTREAM CG42319 INTERGENIC
3R	27125014	3R_27125014_SNP [dm3] 3R_31299292_SNP [dm6]	G	T	1.641e^-4	0.63	INTERGENIC
2R	6450088	2R_6450088_INS [dm3] 2R_10562583_INS [dm6]	A	ATTA	1.642e^-4	0.63	INTRON psq	TF binding site BDTNP1_TFBS_twi
3R	10310657	3R_10310657_SNP [dm3] 3R_14484935_SNP [dm6]	A	C	1.645e^-4	0.63	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	18712002	3L_18712002_SNP [dm3] 3L_18718902_SNP [dm6]	A	T	1.648e^-4	0.63	INTERGENIC
2R	12203277	2R_12203277_SNP [dm3] 2R_16315772_SNP [dm6]	C	T	1.654e^-4	0.63	SYNONYMOUS_CODING Nox DOWNSTREAM CG8060	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	5219045	3L_5219045_SNP [dm3] 3L_5225945_SNP [dm6]	T	A	1.656e^-4	0.63	INTRON shep
2L	17324010	2L_17324010_SNP [dm3] 2L_17324010_SNP [dm6]	G	T	1.659e^-4	0.63	INTERGENIC
X	14804057	X_14804057_SNP [dm3] X_14910024_SNP [dm6]	T	A	1.661e^-4	0.63	UTR_3_PRIME CG14406 UPSTREAM CG9509 DOWNSTREAM CG14406 INTRON Flo2	regulatory region REDfly_CRMs
X	22269213	X_22269213_INS [dm3] X_22867377_INS [dm6]	T	TATGTATGTAT...	1.661e^-4	0.63	INTRON CG42346	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	14095095	X_14095095_SNP [dm3] X_14201062_SNP [dm6]	G	C	1.662e^-4	0.63	UPSTREAM l_1_G0007 DOWNSTREAM CG11590 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	21894973	3R_21894973_DEL [dm3] 3R_26069251_DEL [dm6]	TT	T	1.666e^-4	0.63	INTERGENIC
2L	15132192	2L_15132192_SNP [dm3] 2L_15132192_SNP [dm6]	T	A	1.668e^-4	0.63	DOWNSTREAM tRNA:L:35C INTERGENIC
2L	17333597	2L_17333597_SNP [dm3] 2L_17333597_SNP [dm6]	A	G	1.671e^-4	0.63	INTERGENIC
2R	4905922	2R_4905922_SNP [dm3] 2R_9018417_SNP [dm6]	T	G	1.673e^-4	0.63	DOWNSTREAM CG8170 INTRON CG13747
2L	703091	2L_703091_SNP [dm3] 2L_703091_SNP [dm6]	A	T	1.679e^-4	0.63	INTRON ds	TF binding site BDTNP1_TFBS_dl
3L	3966428	3L_3966428_SNP [dm3] 3L_3966428_SNP [dm6]	C	A	1.680e^-4	0.63	INTERGENIC
2R	12543480	2R_12543480_DEL [dm3] 2R_16655975_DEL [dm6]	AA	G	1.681e^-4	0.63	UPSTREAM Nach INTRON Picot	TF binding site mE1_TFBS_cad
3L	1733503	3L_1733503_SNP [dm3] 3L_1733503_SNP [dm6]	G	A	1.688e^-4	0.63	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12772793	X_12772793_SNP [dm3] X_12878760_SNP [dm6]	T	A	1.689e^-4	0.63	INTRON Pde9
3L	1564511	3L_1564511_SNP [dm3] 3L_1564511_SNP [dm6]	A	G	1.693e^-4	0.63	UPSTREAM CG12003 INTRON CG7879
X	19421607	X_19421607_DEL [dm3] X_19527574_DEL [dm6]	CAC	C	1.697e^-4	0.63	UPSTREAM CoRest INTRON CoRest	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	7124117	3R_7124117_SNP [dm3] 3R_11298395_SNP [dm6]	T	A	1.702e^-4	0.63	INTRON CR31386	TF binding site mE1_TFBS_chinmo
2R	12111030	2R_12111030_SNP [dm3] 2R_16223525_SNP [dm6]	G	A	1.703e^-4	0.63	SYNONYMOUS_CODING CG15706 UPSTREAM CG7798 DOWNSTREAM CR43898
2R	18091512	2R_18091512_SNP [dm3] 2R_22204007_SNP [dm6]	A	G	1.704e^-4	0.63	SYNONYMOUS_CODING CG3292 DOWNSTREAM CR45376
3L	18202714	3L_18202714_SNP [dm3] 3L_18209614_SNP [dm6]	T	G	1.705e^-4	0.63	INTERGENIC
3R	17353856	3R_17353856_SNP [dm3] 3R_21528134_SNP [dm6]	C	T	1.706e^-4	0.63	UTR_3_PRIME CG7956 DOWNSTREAM CG7956	TF binding site BDTNP1_TFBS_slp1
X	8222268	X_8222268_SNP [dm3] X_8328235_SNP [dm6]	A	T	1.706e^-4	0.63	INTRON nAChRalpha3
3R	7091601	3R_7091601_SNP [dm3] 3R_11265879_SNP [dm6]	T	G	1.709e^-4	0.63	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12281996	2R_12281996_SNP [dm3] 2R_16394491_SNP [dm6]	T	C	1.715e^-4	0.63	INTRON Sema-2b
3R	5448643	3R_5448643_SNP [dm3] 3R_9622921_SNP [dm6]	C	T	1.722e^-4	0.63	UPSTREAM CG8312 INTRON CG8312
3L	5572148	3L_5572148_SNP [dm3] 3L_5579048_SNP [dm6]	G	T	1.728e^-4	0.63	INTERGENIC
2L	8447066	2L_8447066_SNP [dm3] 2L_8447066_SNP [dm6]	C	G	1.733e^-4	0.63	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_inv
2R	18418701	2R_18418701_SNP [dm3] 2R_22531196_SNP [dm6]	A	C	1.733e^-4	0.63	INTRON px
2R	18418702	2R_18418702_SNP [dm3] 2R_22531197_SNP [dm6]	C	A	1.733e^-4	0.63	INTRON px
3R	16485807	3R_16485807_SNP [dm3] 3R_20660085_SNP [dm6]	G	A	1.734e^-4	0.63	UPSTREAM Nep4 INTERGENIC	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1 transposable element FlyBase
3R	2868309	3R_2868309_SNP [dm3] 3R_7042587_SNP [dm6]	G	A	1.734e^-4	0.63	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	17289541	2L_17289541_SNP [dm3] 2L_17289541_SNP [dm6]	C	T	1.735e^-4	0.63	INTERGENIC
3R	27125777	3R_27125777_SNP [dm3] 3R_31300055_SNP [dm6]	G	A	1.738e^-4	0.63	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	4367387	3R_4367387_SNP [dm3] 3R_8541665_SNP [dm6]	A	G	1.738e^-4	0.63	INTERGENIC
2R	3077646	2R_3077646_SNP [dm3] 2R_7190141_SNP [dm6]	T	G	1.738e^-4	0.63	INTRON pk
2L	17793294	2L_17793294_SNP [dm3] 2L_17793294_SNP [dm6]	G	T	1.746e^-4	0.63	INTRON CadN2 EXON CR43419	TF binding site mE1_TFBS_cad
2R	7328313	2R_7328313_SNP [dm3] 2R_11440808_SNP [dm6]	G	A	1.748e^-4	0.63	INTRON CG7777
3R	12950029	3R_12950029_DEL [dm3] 3R_17124307_DEL [dm6]	TT	T	1.755e^-4	0.63	UPSTREAM CG45079 INTRON cher
3L	10331762	3L_10331762_SNP [dm3] 3L_10338662_SNP [dm6]	C	A	1.756e^-4	0.63	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9105472	2L_9105472_SNP [dm3] 2L_9105472_SNP [dm6]	A	T	1.758e^-4	0.63	INTERGENIC
3L	712319	3L_712319_INS [dm3] 3L_712319_INS [dm6]	C	CA	1.760e^-4	0.63	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712342	3L_712342_SNP [dm3] 3L_712342_SNP [dm6]	A	T	1.760e^-4	0.63	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	20223672	2R_20223672_SNP [dm3] 2R_24336149_SNP [dm6]	C	G	1.762e^-4	0.63	UPSTREAM CR44282 INTERGENIC
3L	5703242	3L_5703242_SNP [dm3] 3L_5710142_SNP [dm6]	A	T	1.770e^-4	0.63	INTRON sif
3L	1109916	3L_1109916_SNP [dm3] 3L_1109916_SNP [dm6]	C	T	1.773e^-4	0.63	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
X	14062691	X_14062691_SNP [dm3] X_14168658_SNP [dm6]	A	C	1.775e^-4	0.63	UPSTREAM CG12480 INTERGENIC
3R	14771287	3R_14771287_SNP [dm3] 3R_18945565_SNP [dm6]	C	A	1.780e^-4	0.63	INTRON CG42613
2L	17546859	2L_17546859_SNP [dm3] 2L_17546859_SNP [dm6]	T	G	1.788e^-4	0.63	UPSTREAM CR45697 INTERGENIC
X	20434591	X_20434591_SNP [dm3] X_20563564_SNP [dm6]	A	G	1.796e^-4	0.63	INTRON RunxB
3R	2868311	3R_2868311_INS [dm3] 3R_7042589_INS [dm6]	C	CGGA	1.799e^-4	0.63	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	4364876	3R_4364876_SNP [dm3] 3R_8539154_SNP [dm6]	A	G	1.803e^-4	0.63	INTERGENIC
3R	22596495	3R_22596495_SNP [dm3] 3R_26770773_SNP [dm6]	T	G	1.804e^-4	0.63	DOWNSTREAM CR45563 INTERGENIC
3L	13488539	3L_13488539_SNP [dm3] 3L_13495439_SNP [dm6]	C	T	1.805e^-4	0.63	UPSTREAM Tgi INTRON Tgi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19504762	2R_19504762_SNP [dm3] 2R_23617239_SNP [dm6]	G	A	1.805e^-4	0.63	UPSTREAM CG17664 INTERGENIC	TF binding site mE1_TFBS_sens
3R	22141543	3R_22141543_SNP [dm3] 3R_26315821_SNP [dm6]	T	A	1.809e^-4	0.63	INTERGENIC
3L	6060410	3L_6060410_SNP [dm3] 3L_6067310_SNP [dm6]	G	A	1.812e^-4	0.63	INTRON CG42269
2L	15635024	2L_15635024_SNP [dm3] 2L_15635024_SNP [dm6]	A	C	1.813e^-4	0.63	DOWNSTREAM CG18480 INTERGENIC
3R	4363255	3R_4363255_SNP [dm3] 3R_8537533_SNP [dm6]	A	G	1.817e^-4	0.63	INTERGENIC
3L	712335	3L_712335_SNP [dm3] 3L_712335_SNP [dm6]	T	A	1.818e^-4	0.63	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	3154237	X_3154237_SNP [dm3] X_3260204_SNP [dm6]	T	A	1.820e^-4	0.63	INTRON dnc
X	16609430	X_16609430_SNP [dm3] X_16715397_SNP [dm6]	A	T	1.820e^-4	0.63	INTRON CG34325
3L	9661317	3L_9661317_SNP [dm3] 3L_9668217_SNP [dm6]	A	G	1.820e^-4	0.63	INTRON fry	TF binding site mE1_TFBS_cad
3L	19345200	3L_19345200_DEL [dm3] 3L_19352100_DEL [dm6]	GT	A	1.821e^-4	0.63	INTRON CG32206
2L	1239636	2L_1239636_SNP [dm3] 2L_1239636_SNP [dm6]	T	C	1.823e^-4	0.63	UPSTREAM CG5397 INTERGENIC
2R	15315018	2R_15315018_SNP [dm3] 2R_19427513_SNP [dm6]	T	G	1.824e^-4	0.63	SYNONYMOUS_CODING CalpA
3R	15101552	3R_15101552_SNP [dm3] 3R_19275830_SNP [dm6]	C	T	1.826e^-4	0.63	INTERGENIC
2R	19728235	2R_19728235_SNP [dm3] 2R_23840712_SNP [dm6]	G	A	1.830e^-4	0.63	UPSTREAM snoRNA:Psi18S-176 DOWNSTREAM CG5549 & 1 other EXON CR44805	TF binding site mE1_TFBS_HSA
3L	16286534	3L_16286534_SNP [dm3] 3L_16293434_SNP [dm6]	T	C	1.841e^-4	0.63	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	15321323	3L_15321323_SNP [dm3] 3L_15328223_SNP [dm6]	A	T	1.842e^-4	0.63	INTERGENIC
X	17952266	X_17952266_SNP [dm3] X_18058233_SNP [dm6]	G	T	1.846e^-4	0.63	INTRON Sh
2R	16325227	2R_16325227_SNP [dm3] 2R_20437722_SNP [dm6]	G	A	1.847e^-4	0.63	INTRON CG12484
3L	1564689	3L_1564689_SNP [dm3] 3L_1564689_SNP [dm6]	T	C	1.850e^-4	0.63	UPSTREAM CG12003 INTRON CG7879
3R	4345038	3R_4345038_SNP [dm3] 3R_8519316_SNP [dm6]	G	T	1.855e^-4	0.63	INTRON CG11737
2R	3238864	2R_3238864_SNP [dm3] 2R_7351359_SNP [dm6]	A	T	1.855e^-4	0.63	INTRON Dscam1	TF binding site mE1_TFBS_inv
2R	11683256	2R_11683256_SNP [dm3] 2R_15795751_SNP [dm6]	C	T	1.857e^-4	0.63	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	12116819	2R_12116819_SNP [dm3] 2R_16229314_SNP [dm6]	A	G	1.859e^-4	0.63	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	13934392	X_13934392_SNP [dm3] X_14040359_SNP [dm6]	G	C	1.863e^-4	0.63	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15132198	2L_15132198_SNP [dm3] 2L_15132198_SNP [dm6]	A	T	1.876e^-4	0.632	DOWNSTREAM tRNA:L:35C INTERGENIC
2L	19743827	2L_19743827_SNP [dm3] 2L_19743827_SNP [dm6]	G	A	1.884e^-4	0.632	SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	3133403	X_3133403_SNP [dm3] X_3239370_SNP [dm6]	G	A	1.886e^-4	0.632	DOWNSTREAM ng2 INTRON dnc
3L	12424540	3L_12424540_SNP [dm3] 3L_12431440_SNP [dm6]	C	G	1.887e^-4	0.632	INTRON toe	TF binding site BDTNP1_TFBS_dl
X	5702342	X_5702342_SNP [dm3] X_5808309_SNP [dm6]	G	A	1.888e^-4	0.632	UPSTREAM Prosbeta2R1 INTERGENIC
3R	24397623	3R_24397623_SNP [dm3] 3R_28571901_SNP [dm6]	T	C	1.894e^-4	0.632	INTERGENIC	regulatory region REDfly_CRMs
2R	19504761	2R_19504761_SNP [dm3] 2R_23617238_SNP [dm6]	T	C	1.898e^-4	0.632	UPSTREAM CG17664 INTERGENIC	TF binding site mE1_TFBS_sens
X	15671878	X_15671878_SNP [dm3] X_15777845_SNP [dm6]	G	A	1.903e^-4	0.632	NON_SYNONYMOUS_CODING CG43672
3L	13993525	3L_13993525_SNP [dm3] 3L_14000425_SNP [dm6]	G	A	1.905e^-4	0.632	SYNONYMOUS_CODING CG8783	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5572178	3L_5572178_SNP [dm3] 3L_5579078_SNP [dm6]	A	T	1.913e^-4	0.632	INTERGENIC
3R	24132597	3R_24132597_SNP [dm3] 3R_28306875_SNP [dm6]	A	T	1.918e^-4	0.632	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	1926921	2R_1926921_SNP [dm3] 2R_6039416_SNP [dm6]	C	G	1.920e^-4	0.632	INTRON CG14591
3L	11386624	3L_11386624_SNP [dm3] 3L_11393524_SNP [dm6]	A	G	1.924e^-4	0.632	INTERGENIC
3L	20821277	3L_20821277_SNP [dm3] 3L_20828177_SNP [dm6]	C	T	1.928e^-4	0.632	UTR_5_PRIME Pka-R1 UPSTREAM Pka-R1 INTRON Pka-R1
2R	13739800	2R_13739800_SNP [dm3] 2R_17852295_SNP [dm6]	G	T	1.929e^-4	0.632	UPSTREAM CG30323 INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14561228	3L_14561228_SNP [dm3] 3L_14568128_SNP [dm6]	T	G	1.930e^-4	0.632	UTR_3_PRIME CG42758
X	11756925	X_11756925_SNP [dm3] X_11862892_SNP [dm6]	T	C	1.938e^-4	0.632	INTRON ATP7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15132193	2L_15132193_SNP [dm3] 2L_15132193_SNP [dm6]	A	T	1.938e^-4	0.632	DOWNSTREAM tRNA:L:35C INTERGENIC
X	13095658	X_13095658_SNP [dm3] X_13201625_SNP [dm6]	C	T	1.945e^-4	0.632	SYNONYMOUS_CODING CG44437 INTRON sno	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	12923235	X_12923235_SNP [dm3] X_13029202_SNP [dm6]	A	T	1.946e^-4	0.632	INTRON rad
2R	16787149	2R_16787149_INS [dm3] 2R_20899644_INS [dm6]	G	GAAAACCCATTG...	1.946e^-4	0.632	INTRON otp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	27129490	3R_27129490_SNP [dm3] 3R_31303768_SNP [dm6]	A	G	1.949e^-4	0.632	SYNONYMOUS_CODING CG11340	TF binding site mE1_TFBS_sens
2L	4292732	2L_4292732_SNP [dm3] 2L_4292732_SNP [dm6]	G	T	1.958e^-4	0.632	INTRON tutl
2L	13875526	2L_13875526_SNP [dm3] 2L_13875526_SNP [dm6]	C	T	1.964e^-4	0.632	INTRON CenG1A
X	12358215	X_12358215_SNP [dm3] X_12464182_SNP [dm6]	T	C	1.966e^-4	0.632	SYNONYMOUS_CODING CG42258	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
2L	15635039	2L_15635039_SNP [dm3] 2L_15635039_SNP [dm6]	T	A	1.968e^-4	0.632	DOWNSTREAM CG18480 INTERGENIC
2R	13231432	2R_13231432_SNP [dm3] 2R_17343927_SNP [dm6]	C	T	1.970e^-4	0.632	INTRON mbl
X	14231319	X_14231319_SNP [dm3] X_14337286_SNP [dm6]	T	C	1.974e^-4	0.632	INTRON dpr8
3R	4349607	3R_4349607_SNP [dm3] 3R_8523885_SNP [dm6]	G	A	1.978e^-4	0.632	UPSTREAM CG31259 DOWNSTREAM CG31454 INTERGENIC
X	7617605	X_7617605_SNP [dm3] X_7723572_SNP [dm6]	A	T	1.986e^-4	0.632	NON_SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	17935653	X_17935653_SNP [dm3] X_18041620_SNP [dm6]	G	T	1.987e^-4	0.632	INTRON Sh
2L	9199408	2L_9199408_SNP [dm3] 2L_9199408_SNP [dm6]	C	T	1.997e^-4	0.632	INTRON tai
X	17405694	X_17405694_SNP [dm3] X_17511661_SNP [dm6]	C	T	2.002e^-4	0.632	INTRON CG43658	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	412168	3L_412168_SNP [dm3] 3L_412168_SNP [dm6]	G	A	2.012e^-4	0.632	INTERGENIC
2R	3078631	2R_3078631_DEL [dm3] 2R_7191126_DEL [dm6]	TACT	T	2.012e^-4	0.632	INTRON pk	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3L	5982580	3L_5982580_SNP [dm3] 3L_5989480_SNP [dm6]	T	A	2.016e^-4	0.632	INTERGENIC
3L	11912401	3L_11912401_SNP [dm3] 3L_11919301_SNP [dm6]	T	C	2.017e^-4	0.632	INTRON CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	15518672	X_15518672_SNP [dm3] X_15624639_SNP [dm6]	G	A	2.020e^-4	0.632	INTRON sog	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	712322	3L_712322_SNP [dm3] 3L_712322_SNP [dm6]	A	G	2.022e^-4	0.632	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	12364848	X_12364848_SNP [dm3] X_12470815_SNP [dm6]	G	A	2.024e^-4	0.632	UPSTREAM CG42258 INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15376092	3L_15376092_DEL [dm3] 3L_15382992_DEL [dm6]	TTA	T	2.024e^-4	0.632	INTERGENIC
X	12665713	X_12665713_SNP [dm3] X_12771680_SNP [dm6]	A	C	2.026e^-4	0.632	UTR_3_PRIME CG3812 DOWNSTREAM CG32647 & 1 other
3L	13239943	3L_13239943_SNP [dm3] 3L_13246843_SNP [dm6]	T	A	2.028e^-4	0.632	DOWNSTREAM CG32119 INTRON caps
3L	14815037	3L_14815037_SNP [dm3] 3L_14821937_SNP [dm6]	A	C	2.029e^-4	0.632	INTRON CG17839
3R	26659826	3R_26659826_SNP [dm3] 3R_30834104_SNP [dm6]	A	C	2.032e^-4	0.632	INTRON CG15544
3L	18113039	3L_18113039_SNP [dm3] 3L_18119939_SNP [dm6]	C	A	2.038e^-4	0.632	SYNONYMOUS_CODING CG7341 DOWNSTREAM CG32195 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	376777	2L_376777_SNP [dm3] 2L_376777_SNP [dm6]	G	A	2.039e^-4	0.632	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	12793517	X_12793517_SNP [dm3] X_12899484_SNP [dm6]	T	C	2.041e^-4	0.632	UPSTREAM CG32650 INTRON CG32649	TF binding site mE1_TFBS_chinmo
2L	2314973	2L_2314973_SNP [dm3] 2L_2314973_SNP [dm6]	C	T	2.050e^-4	0.632	INTRON CG9967 & 1 other
X	4938420	X_4938420_SNP [dm3] X_5044387_SNP [dm6]	T	A	2.050e^-4	0.632	INTRON CR44833	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	9053262	2L_9053262_SNP [dm3] 2L_9053262_SNP [dm6]	T	A	2.051e^-4	0.632	INTRON CG31708
X	2552057	X_2552057_SNP [dm3] X_2658024_SNP [dm6]	G	T	2.052e^-4	0.632	UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16344120	X_16344120_SNP [dm3] X_16450087_SNP [dm6]	G	A	2.057e^-4	0.632	SYNONYMOUS_CODING Rbp2	TF binding site BDTNP1_TFBS_dl
3L	1731239	3L_1731239_INS [dm3] 3L_1731239_INS [dm6]	T	TGT	2.060e^-4	0.632	UTR_3_PRIME Oseg4 UPSTREAM drpr DOWNSTREAM Oseg4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19737343	2L_19737343_SNP [dm3] 2L_19737343_SNP [dm6]	G	T	2.061e^-4	0.632	DOWNSTREAM Nf-YB INTERGENIC
X	21063578	X_21063578_SNP [dm3] X_21192551_SNP [dm6]	G	A	2.061e^-4	0.632	UPSTREAM CG14579 INTERGENIC
3L	12023901	3L_12023901_SNP [dm3] 3L_12030801_SNP [dm6]	C	T	2.067e^-4	0.632	INTRON rols	TF binding site mE1_TFBS_cad
2R	11736214	2R_11736214_SNP [dm3] 2R_15848709_SNP [dm6]	A	T	2.070e^-4	0.632	UTR_5_PRIME tun
3R	9959340	3R_9959340_SNP [dm3] 3R_14133618_SNP [dm6]	C	T	2.071e^-4	0.632	INTERGENIC
3R	4369002	3R_4369002_SNP [dm3] 3R_8543280_SNP [dm6]	C	A	2.079e^-4	0.632	INTERGENIC
2L	12527947	2L_12527947_SNP [dm3] 2L_12527947_SNP [dm6]	C	T	2.084e^-4	0.632	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4950454	2R_4950454_SNP [dm3] 2R_9062949_SNP [dm6]	G	A	2.086e^-4	0.632	INTRON ana	regulatory region REDfly_CRMs
2L	21921535	2L_21921535_SNP [dm3] 2L_21921535_SNP [dm6]	T	C	2.091e^-4	0.632	INTERGENIC
3L	1733100	3L_1733100_SNP [dm3] 3L_1733100_SNP [dm6]	G	A	2.093e^-4	0.632	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21584030	3R_21584030_SNP [dm3] 3R_25758308_SNP [dm6]	A	G	2.099e^-4	0.632	INTRON LpR1
X	10517805	X_10517805_SNP [dm3] X_10623772_SNP [dm6]	G	C	2.101e^-4	0.632	UTR_3_PRIME CG9806 UPSTREAM Rab9Db
2L	17887873	2L_17887873_SNP [dm3] 2L_17887873_SNP [dm6]	G	A	2.101e^-4	0.632	INTERGENIC
3L	12431023	3L_12431023_SNP [dm3] 3L_12437923_SNP [dm6]	C	T	2.105e^-4	0.632	INTERGENIC
3L	8391974	3L_8391974_SNP [dm3] 3L_8398874_SNP [dm6]	G	A	2.106e^-4	0.632	INTRON CG7120
2L	9105664	2L_9105664_SNP [dm3] 2L_9105664_SNP [dm6]	G	A	2.107e^-4	0.632	INTERGENIC
2L	17783246	2L_17783246_SNP [dm3] 2L_17783246_SNP [dm6]	T	A	2.113e^-4	0.632	INTERGENIC
2L	9105311	2L_9105311_SNP [dm3] 2L_9105311_SNP [dm6]	G	T	2.113e^-4	0.632	INTERGENIC
2L	17891596	2L_17891596_SNP [dm3] 2L_17891596_SNP [dm6]	C	T	2.117e^-4	0.632	INTERGENIC
2L	14686016	2L_14686016_SNP [dm3] 2L_14686016_SNP [dm6]	A	G	2.121e^-4	0.632	INTRON osp
3R	12957663	3R_12957663_SNP [dm3] 3R_17131941_SNP [dm6]	G	A	2.122e^-4	0.632	SYNONYMOUS_CODING CG4053 UPSTREAM CG31266	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	16491239	3L_16491239_SNP [dm3] 3L_16498139_SNP [dm6]	T	C	2.128e^-4	0.633	INTRON CG43373 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8347549	X_8347549_SNP [dm3] X_8453516_SNP [dm6]	A	G	2.132e^-4	0.633	INTRON org-1
X	9489608	X_9489608_SNP [dm3] X_9595575_SNP [dm6]	G	A	2.145e^-4	0.636	DOWNSTREAM CR45543 INTERGENIC
3R	21341350	3R_21341350_SNP [dm3] 3R_25515628_SNP [dm6]	G	T	2.150e^-4	0.636	UPSTREAM msi INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	1072752	2L_1072752_SNP [dm3] 2L_1072752_SNP [dm6]	G	T	2.162e^-4	0.636	INTRON S
3L	2862370	3L_2862370_SNP [dm3] 3L_2862370_SNP [dm6]	G	T	2.162e^-4	0.636	INTRON CG43444
3L	5566949	3L_5566949_SNP [dm3] 3L_5573849_SNP [dm6]	C	A	2.164e^-4	0.636	INTRON Msr-110
2R	19730181	2R_19730181_SNP [dm3] 2R_23842658_SNP [dm6]	T	A	2.166e^-4	0.636	SYNONYMOUS_CODING shu DOWNSTREAM Snap29	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12223151	3L_12223151_SNP [dm3] 3L_12230051_SNP [dm6]	T	A	2.168e^-4	0.636	INTRON app
2R	17143504	2R_17143504_SNP [dm3] 2R_21255999_SNP [dm6]	G	A	2.171e^-4	0.636	START_GAINED Rgk3 UTR_5_PRIME Rgk3
2R	21136941	2R_21136941_SNP [dm3] 2R_25249418_SNP [dm6]	C	T	2.178e^-4	0.636	SYNONYMOUS_CODING CG33680 INTRON CG9380
3R	25212391	3R_25212391_SNP [dm3] 3R_29386669_SNP [dm6]	C	T	2.181e^-4	0.636	INTRON Ptp99A	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
3R	25725233	3R_25725233_DEL [dm3] 3R_29899511_DEL [dm6]	TGT	T	2.182e^-4	0.636	DOWNSTREAM CG31038 INTRON CG31038
3L	4393505	3L_4393505_SNP [dm3] 3L_4393505_SNP [dm6]	C	G	2.182e^-4	0.636	INTRON slow
3R	5076316	3R_5076316_SNP [dm3] 3R_9250594_SNP [dm6]	C	T	2.188e^-4	0.637	INTRON CG8420
X	4091094	X_4091094_DEL [dm3] X_4197061_DEL [dm6]	AAA	A	2.201e^-4	0.639	INTRON Fas2
X	12318134	X_12318134_SNP [dm3] X_12424101_SNP [dm6]	T	A	2.202e^-4	0.639	INTERGENIC
X	12364764	X_12364764_SNP [dm3] X_12470731_SNP [dm6]	T	A	2.204e^-4	0.639	UPSTREAM CG42258 INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1857866	3L_1857866_SNP [dm3] 3L_1857866_SNP [dm6]	C	T	2.209e^-4	0.639	SYNONYMOUS_CODING CG12024	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16943256	2L_16943256_SNP [dm3] 2L_16943256_SNP [dm6]	G	A	2.222e^-4	0.642	INTERGENIC
2L	14748825	2L_14748825_SNP [dm3] 2L_14748825_SNP [dm6]	C	T	2.224e^-4	0.642	INTERGENIC
2L	13446531	2L_13446531_SNP [dm3] 2L_13446531_SNP [dm6]	A	T	2.231e^-4	0.642	UTR_5_PRIME CG42784 UPSTREAM CG9267
3L	15376084	3L_15376084_MNP [dm3] 3L_15382984_MNP [dm6]	AGT	CAA	2.232e^-4	0.642	INTERGENIC
3L	1736275	3L_1736275_SNP [dm3] 3L_1736275_SNP [dm6]	T	C	2.250e^-4	0.646	NON_SYNONYMOUS_CODING CG18173 UPSTREAM Oseg4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1568524	3L_1568524_SNP [dm3] 3L_1568524_SNP [dm6]	A	C	2.259e^-4	0.648	UTR_5_PRIME CG7879 UPSTREAM CG12004 DOWNSTREAM CG12003	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	15960006	2L_15960006_SNP [dm3] 2L_15960006_SNP [dm6]	T	C	2.265e^-4	0.648	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
3L	712455	3L_712455_SNP [dm3] 3L_712455_SNP [dm6]	C	T	2.268e^-4	0.648	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	12958523	3R_12958523_SNP [dm3] 3R_17132801_SNP [dm6]	G	A	2.287e^-4	0.651	SYNONYMOUS_CODING CG31266 UPSTREAM CG4053	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26871231	3R_26871231_SNP [dm3] 3R_31045509_SNP [dm6]	A	C	2.288e^-4	0.651	UPSTREAM CG33920 INTRON CanA1
3L	7309978	3L_7309978_SNP [dm3] 3L_7316878_SNP [dm6]	G	T	2.289e^-4	0.651	INTERGENIC
2L	763271	2L_763271_SNP [dm3] 2L_763271_SNP [dm6]	T	C	2.295e^-4	0.651	DOWNSTREAM GABA-B-R3 INTERGENIC
2L	17799688	2L_17799688_SNP [dm3] 2L_17799688_SNP [dm6]	T	A	2.296e^-4	0.651	INTRON CadN2
3L	14815465	3L_14815465_SNP [dm3] 3L_14822365_SNP [dm6]	G	A	2.304e^-4	0.653	INTRON CG17839
X	12364360	X_12364360_SNP [dm3] X_12470327_SNP [dm6]	T	C	2.309e^-4	0.653	INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	17891665	3L_17891665_SNP [dm3] 3L_17898565_SNP [dm6]	G	A	2.315e^-4	0.654	DOWNSTREAM Prestin INTERGENIC
2L	2519691	2L_2519691_SNP [dm3] 2L_2519691_SNP [dm6]	T	C	2.319e^-4	0.654	INTERGENIC
3L	9783263	3L_9783263_SNP [dm3] 3L_9790163_SNP [dm6]	T	G	2.326e^-4	0.655	DOWNSTREAM Zasp67 INTRON Zasp67	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	15635101	2L_15635101_SNP [dm3] 2L_15635101_SNP [dm6]	T	A	2.336e^-4	0.656	DOWNSTREAM CG18480 INTERGENIC
3R	4596948	3R_4596948_SNP [dm3] 3R_8771226_SNP [dm6]	C	A	2.344e^-4	0.656	DOWNSTREAM CG13318 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	6754351	3L_6754351_SNP [dm3] 3L_6761251_SNP [dm6]	C	T	2.351e^-4	0.656	UPSTREAM CG32392 INTRON CG32392
X	11289440	X_11289440_SNP [dm3] X_11395407_SNP [dm6]	T	G	2.357e^-4	0.656	SYNONYMOUS_CODING dlg1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11415517	3L_11415517_SNP [dm3] 3L_11422417_SNP [dm6]	A	T	2.363e^-4	0.656	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14150313	2L_14150313_SNP [dm3] 2L_14150313_SNP [dm6]	T	C	2.368e^-4	0.656	INTRON CG17341
2R	9147482	2R_9147482_SNP [dm3] 2R_13259977_SNP [dm6]	A	G	2.369e^-4	0.656	UPSTREAM CG42319 INTERGENIC
3R	26678179	3R_26678179_SNP [dm3] 3R_30852457_SNP [dm6]	A	G	2.384e^-4	0.656	UTR_5_PRIME tll	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	22315281	X_22315281_SNP [dm3] X_22913445_SNP [dm6]	A	T	2.386e^-4	0.656	INTERGENIC
2L	17324015	2L_17324015_INS [dm3] 2L_17324015_INS [dm6]	A	AAA	2.394e^-4	0.656	INTERGENIC
2L	8448070	2L_8448070_SNP [dm3] 2L_8448070_SNP [dm6]	C	T	2.404e^-4	0.656	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13341680	2L_13341680_DEL [dm3] 2L_13341680_DEL [dm6]	TAATGCAT	T	2.414e^-4	0.656	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	11724908	2R_11724908_SNP [dm3] 2R_15837403_SNP [dm6]	C	T	2.422e^-4	0.656	INTRON tun	regulatory region REDfly_CRMs
2R	11683570	2R_11683570_SNP [dm3] 2R_15796065_SNP [dm6]	T	G	2.423e^-4	0.656	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1383805	2L_1383805_SNP [dm3] 2L_1383805_SNP [dm6]	G	C	2.428e^-4	0.656	INTRON lea
2L	19577867	2L_19577867_SNP [dm3] 2L_19577867_SNP [dm6]	C	A	2.438e^-4	0.656	NON_SYNONYMOUS_CODING msb1l UPSTREAM spi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2R	13176679	2R_13176679_SNP [dm3] 2R_17289174_SNP [dm6]	G	C	2.440e^-4	0.656	INTRON mbl
2R	6277618	2R_6277618_MNP [dm3] 2R_10390113_MNP [dm6]	AATA	CTCG	2.444e^-4	0.656	INTRON CG42732
2R	19008611	2R_19008611_SNP [dm3] 2R_23121088_SNP [dm6]	G	A	2.445e^-4	0.656	INTERGENIC
2L	1239300	2L_1239300_DEL [dm3] 2L_1239300_DEL [dm6]	TGCT	T	2.449e^-4	0.656	UPSTREAM CG5397 INTERGENIC
2L	1598587	2L_1598587_SNP [dm3] 2L_1598587_SNP [dm6]	T	G	2.450e^-4	0.656	INTRON haf & 1 other
X	7619193	X_7619193_SNP [dm3] X_7725160_SNP [dm6]	C	T	2.454e^-4	0.656	SYNONYMOUS_CODING Hira DOWNSTREAM NELF-B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1564487	3L_1564487_SNP [dm3] 3L_1564487_SNP [dm6]	C	A	2.461e^-4	0.656	UPSTREAM CG12003 INTRON CG7879
2R	14671796	2R_14671796_SNP [dm3] 2R_18784291_SNP [dm6]	G	A	2.463e^-4	0.656	INTRON CG15080	enhancer mE1_CBP_Enhancers
3R	12971257	3R_12971257_SNP [dm3] 3R_17145535_SNP [dm6]	A	C	2.464e^-4	0.656	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3R	12971260	3R_12971260_DEL [dm3] 3R_17145538_DEL [dm6]	AGGTAAGCATCCTA...	G	2.464e^-4	0.656	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
2L	4106375	2L_4106375_SNP [dm3] 2L_4106375_SNP [dm6]	A	C	2.464e^-4	0.656	INTRON ed
2L	4106377	2L_4106377_SNP [dm3] 2L_4106377_SNP [dm6]	T	A	2.464e^-4	0.656	INTRON ed
3R	25570656	3R_25570656_SNP [dm3] 3R_29744934_SNP [dm6]	G	A	2.467e^-4	0.656	SYNONYMOUS_CODING CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25779128	3R_25779128_SNP [dm3] 3R_29953406_SNP [dm6]	G	A	2.471e^-4	0.656	SYNONYMOUS_CODING TkR99D
3L	15293354	3L_15293354_SNP [dm3] 3L_15300254_SNP [dm6]	T	A	2.475e^-4	0.656	SYNONYMOUS_CODING Best4 DOWNSTREAM Best3
2R	12282277	2R_12282277_SNP [dm3] 2R_16394772_SNP [dm6]	C	T	2.477e^-4	0.656	INTRON Sema-2b
3L	20902444	3L_20902444_SNP [dm3] 3L_20909344_SNP [dm6]	A	T	2.481e^-4	0.656	INTERGENIC
3R	17767309	3R_17767309_INS [dm3] 3R_21941587_INS [dm6]	T	TGTATATTTACGCTTT...	2.485e^-4	0.656	INTERGENIC
2R	16320060	2R_16320060_SNP [dm3] 2R_20432555_SNP [dm6]	T	A	2.486e^-4	0.656	INTRON CG12484
2R	6016574	2R_6016574_SNP [dm3] 2R_10129069_SNP [dm6]	G	A	2.486e^-4	0.656	INTRON gem	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	12896052	2L_12896052_SNP [dm3] 2L_12896052_SNP [dm6]	T	C	2.494e^-4	0.656	INTERGENIC
2L	1137701	2L_1137701_SNP [dm3] 2L_1137701_SNP [dm6]	T	C	2.502e^-4	0.656	INTRON CG4577
3L	16202307	3L_16202307_SNP [dm3] 3L_16209207_SNP [dm6]	T	C	2.504e^-4	0.656	INTERGENIC	TF binding site mE1_TFBS_cad
2L	1598700	2L_1598700_DEL [dm3] 2L_1598700_DEL [dm6]	AC	A	2.504e^-4	0.656	INTRON haf & 1 other
3R	16890216	3R_16890216_SNP [dm3] 3R_21064494_SNP [dm6]	C	T	2.506e^-4	0.656	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
X	11409369	X_11409369_SNP [dm3] X_11515336_SNP [dm6]	T	G	2.508e^-4	0.656	INTRON Drak	TF binding site mE1_TFBS_Kr
3R	13600157	3R_13600157_SNP [dm3] 3R_17774435_SNP [dm6]	T	G	2.516e^-4	0.656	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
X	18634633	X_18634633_SNP [dm3] X_18740600_SNP [dm6]	T	C	2.516e^-4	0.656	UPSTREAM CG6873 INTERGENIC
2R	20139803	2R_20139803_SNP [dm3] 2R_24252280_SNP [dm6]	A	T	2.520e^-4	0.656	UPSTREAM Ir60a DOWNSTREAM snoRNA:Me18S-A1597 INTRON nord
2R	16565626	2R_16565626_DEL [dm3] 2R_20678121_DEL [dm6]	AT	A	2.531e^-4	0.656	INTERGENIC
3L	13310290	3L_13310290_SNP [dm3] 3L_13317190_SNP [dm6]	T	G	2.534e^-4	0.656	INTERGENIC
3R	24132555	3R_24132555_SNP [dm3] 3R_28306833_SNP [dm6]	A	G	2.535e^-4	0.656	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	3874896	3L_3874896_SNP [dm3] 3L_3874896_SNP [dm6]	T	A	2.537e^-4	0.656	INTERGENIC
3L	15596933	3L_15596933_INS [dm3] 3L_15603833_INS [dm6]	C	CAC	2.540e^-4	0.656	DOWNSTREAM RhoGAP71E INTRON RhoGAP71E
3R	12079955	3R_12079955_INS [dm3] 3R_16254233_INS [dm6]	G	GCTG	2.540e^-4	0.656	INTRON tara	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	14842540	X_14842540_SNP [dm3] X_14948507_SNP [dm6]	T	C	2.549e^-4	0.656	INTRON pdgy	TF binding site mE1_TFBS_HSA
2L	15132213	2L_15132213_DEL [dm3] 2L_15132213_DEL [dm6]	TGTT	T	2.555e^-4	0.656	DOWNSTREAM tRNA:L:35C INTERGENIC
3R	8117798	3R_8117798_SNP [dm3] 3R_12292076_SNP [dm6]	C	T	2.555e^-4	0.656	INTRON svp
2R	7076790	2R_7076790_SNP [dm3] 2R_11189285_SNP [dm6]	G	A	2.562e^-4	0.656	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8454665	X_8454665_SNP [dm3] X_8560632_SNP [dm6]	A	G	2.568e^-4	0.656	UTR_5_PRIME Trf4-1 UPSTREAM Trf4-1 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	15117875	3R_15117875_SNP [dm3] 3R_19292153_SNP [dm6]	G	A	2.574e^-4	0.656	INTERGENIC
3L	6757118	3L_6757118_INS [dm3] 3L_6764018_INS [dm6]	T	TGTAT	2.578e^-4	0.656	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
2L	8447795	2L_8447795_SNP [dm3] 2L_8447795_SNP [dm6]	C	T	2.583e^-4	0.656	SYNONYMOUS_CODING U26 UTR_3_PRIME U26
2L	4306167	2L_4306167_SNP [dm3] 2L_4306167_SNP [dm6]	A	G	2.584e^-4	0.656	DOWNSTREAM tutl INTRON tutl	TF binding site mE1_TFBS_chinmo
3R	24132562	3R_24132562_SNP [dm3] 3R_28306840_SNP [dm6]	A	T	2.591e^-4	0.656	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	712323	3L_712323_SNP [dm3] 3L_712323_SNP [dm6]	T	A	2.601e^-4	0.656	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	21895112	3R_21895112_SNP [dm3] 3R_26069390_SNP [dm6]	G	T	2.602e^-4	0.656	DOWNSTREAM CR44950 INTERGENIC
X	8918494	X_8918494_SNP [dm3] X_9024461_SNP [dm6]	T	G	2.603e^-4	0.656	INTRON CR43836 & 1 other
2R	19262666	2R_19262666_SNP [dm3] 2R_23375143_SNP [dm6]	G	T	2.612e^-4	0.656	NON_SYNONYMOUS_CODING Golgin245	TF binding site mE1_TFBS_cad
2L	8450856	2L_8450856_SNP [dm3] 2L_8450856_SNP [dm6]	A	C	2.620e^-4	0.656	SYNONYMOUS_CODING fu12
3R	5158230	3R_5158230_SNP [dm3] 3R_9332508_SNP [dm6]	T	A	2.621e^-4	0.656	UTR_3_PRIME CG8866 UPSTREAM CG16749 INTRON CG8866	TF binding site mE1_TFBS_cad
3R	5158232	3R_5158232_SNP [dm3] 3R_9332510_SNP [dm6]	T	G	2.621e^-4	0.656	UTR_3_PRIME CG8866 UPSTREAM CG16749 INTRON CG8866	TF binding site mE1_TFBS_cad
X	21292976	X_21292976_SNP [dm3] X_21421949_SNP [dm6]	A	G	2.621e^-4	0.656	DOWNSTREAM CG42343 INTERGENIC	TF binding site mE1_TFBS_cnc
3L	5478070	3L_5478070_SNP [dm3] 3L_5484970_SNP [dm6]	A	T	2.632e^-4	0.656	INTERGENIC
2R	16388566	2R_16388566_SNP [dm3] 2R_20501061_SNP [dm6]	T	C	2.636e^-4	0.656	INTERGENIC	regulatory region REDfly_CRMs
X	19315413	X_19315413_SNP [dm3] X_19421380_SNP [dm6]	T	G	2.644e^-4	0.656	INTRON kek5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15376180	3L_15376180_SNP [dm3] 3L_15383080_SNP [dm6]	T	G	2.656e^-4	0.656	INTERGENIC
X	8327234	X_8327234_SNP [dm3] X_8433201_SNP [dm6]	G	C	2.657e^-4	0.656	SYNONYMOUS_CODING CG32712 DOWNSTREAM CG12125 & 1 other
2L	10082295	2L_10082295_SNP [dm3] 2L_10082295_SNP [dm6]	C	T	2.657e^-4	0.656	INTRON CG44153	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15085328	3R_15085328_SNP [dm3] 3R_19259606_SNP [dm6]	C	A	2.659e^-4	0.656	INTRON CG14280
3L	15376073	3L_15376073_DEL [dm3] 3L_15382973_DEL [dm6]	AATT	A	2.662e^-4	0.656	INTERGENIC
2L	14538270	2L_14538270_SNP [dm3] 2L_14538270_SNP [dm6]	T	A	2.675e^-4	0.656	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	17302534	2L_17302534_SNP [dm3] 2L_17302534_SNP [dm6]	A	G	2.681e^-4	0.656	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17897053	2R_17897053_SNP [dm3] 2R_22009548_SNP [dm6]	C	T	2.693e^-4	0.656	INTRON CG34370
3R	16485754	3R_16485754_DEL [dm3] 3R_20660032_DEL [dm6]	AG	A	2.697e^-4	0.656	UPSTREAM Nep4 INTERGENIC
2L	14149904	2L_14149904_SNP [dm3] 2L_14149904_SNP [dm6]	G	A	2.700e^-4	0.656	INTRON CG17341
X	17404321	X_17404321_SNP [dm3] X_17510288_SNP [dm6]	T	A	2.703e^-4	0.656	INTRON CG43658	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	12450024	3L_12450024_SNP [dm3] 3L_12456924_SNP [dm6]	G	A	2.704e^-4	0.656	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	15066975	3L_15066975_SNP [dm3] 3L_15073875_SNP [dm6]	A	T	2.710e^-4	0.656	INTRON cp309
X	17404938	X_17404938_SNP [dm3] X_17510905_SNP [dm6]	C	A	2.712e^-4	0.656	INTRON CG43658
3L	3966356	3L_3966356_SNP [dm3] 3L_3966356_SNP [dm6]	T	C	2.712e^-4	0.656	INTERGENIC
3L	13924066	3L_13924066_SNP [dm3] 3L_13930966_SNP [dm6]	G	A	2.713e^-4	0.656	NON_SYNONYMOUS_CODING Gl	TF binding site mE1_TFBS_cad
X	7617541	X_7617541_SNP [dm3] X_7723508_SNP [dm6]	C	A	2.724e^-4	0.656	SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	14671861	2R_14671861_SNP [dm3] 2R_18784356_SNP [dm6]	T	A	2.725e^-4	0.656	INTRON CG15080	enhancer mE1_CBP_Enhancers
3R	10305787	3R_10305787_SNP [dm3] 3R_14480065_SNP [dm6]	G	A	2.728e^-4	0.656	INTRON cv-c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15376089	3L_15376089_SNP [dm3] 3L_15382989_SNP [dm6]	T	A	2.736e^-4	0.656	INTERGENIC
3L	3357948	3L_3357948_SNP [dm3] 3L_3357948_SNP [dm6]	T	C	2.737e^-4	0.656	INTRON kst	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3L	4841509	3L_4841509_SNP [dm3] 3L_4841509_SNP [dm6]	C	T	2.741e^-4	0.656	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	4762195	3L_4762195_DEL [dm3] 3L_4762195_DEL [dm6]	GGAATTTATATTAA...	T	2.747e^-4	0.656	INTRON RhoGEF64C
X	14843656	X_14843656_SNP [dm3] X_14949623_SNP [dm6]	A	T	2.750e^-4	0.656	INTRON pdgy
X	14804241	X_14804241_SNP [dm3] X_14910208_SNP [dm6]	C	G	2.751e^-4	0.656	SYNONYMOUS_CODING CG14406 UPSTREAM CG9509 INTRON Flo2
2R	14905518	2R_14905518_DEL [dm3] 2R_19018013_DEL [dm6]	CAAG	C	2.753e^-4	0.656	INTERGENIC
2L	15635012	2L_15635012_SNP [dm3] 2L_15635012_SNP [dm6]	G	A	2.753e^-4	0.656	DOWNSTREAM CG18480 INTERGENIC
3L	1564489	3L_1564489_SNP [dm3] 3L_1564489_SNP [dm6]	A	G	2.754e^-4	0.656	UPSTREAM CG12003 INTRON CG7879
3L	20064691	3L_20064691_SNP [dm3] 3L_20071591_SNP [dm6]	T	C	2.757e^-4	0.656	INTRON sNPF-R	TF binding site mE1_TFBS_chinmo
2L	16957088	2L_16957088_SNP [dm3] 2L_16957088_SNP [dm6]	T	C	2.759e^-4	0.656	INTERGENIC
3R	10435018	3R_10435018_SNP [dm3] 3R_14609296_SNP [dm6]	T	G	2.773e^-4	0.656	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	17302565	2L_17302565_SNP [dm3] 2L_17302565_SNP [dm6]	C	A	2.790e^-4	0.656	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	648426	2L_648426_SNP [dm3] 2L_648426_SNP [dm6]	C	T	2.797e^-4	0.656	INTRON ds
X	4088847	X_4088847_SNP [dm3] X_4194814_SNP [dm6]	T	G	2.803e^-4	0.656	INTRON Fas2
2R	5696482	2R_5696482_SNP [dm3] 2R_9808977_SNP [dm6]	C	G	2.805e^-4	0.656	INTERGENIC
3L	5848374	3L_5848374_SNP [dm3] 3L_5855274_SNP [dm6]	A	T	2.805e^-4	0.656	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	14844743	X_14844743_SNP [dm3] X_14950710_SNP [dm6]	A	C	2.807e^-4	0.656	UTR_5_PRIME pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	13934374	X_13934374_SNP [dm3] X_14040341_SNP [dm6]	C	T	2.813e^-4	0.656	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19020595	X_19020595_SNP [dm3] X_19126562_SNP [dm6]	G	A	2.820e^-4	0.656	INTRON tgy
3R	4382182	3R_4382182_SNP [dm3] 3R_8556460_SNP [dm6]	G	A	2.823e^-4	0.656	INTERGENIC
2L	2383732	2L_2383732_SNP [dm3] 2L_2383732_SNP [dm6]	A	G	2.830e^-4	0.656	NON_SYNONYMOUS_CODING CG9870 DOWNSTREAM Eogt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10283382	X_10283382_SNP [dm3] X_10389349_SNP [dm6]	A	G	2.830e^-4	0.656	INTRON flw
3L	15066972	3L_15066972_SNP [dm3] 3L_15073872_SNP [dm6]	A	C	2.838e^-4	0.656	INTRON cp309
2L	7142127	2L_7142127_SNP [dm3] 2L_7142127_SNP [dm6]	A	G	2.839e^-4	0.656	UPSTREAM CR44612 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13136787	X_13136787_SNP [dm3] X_13242754_SNP [dm6]	C	T	2.839e^-4	0.656	INTRON mew	TF binding site BDTNP1_TFBS_da
2L	8705405	2L_8705405_SNP [dm3] 2L_8705405_SNP [dm6]	T	A	2.848e^-4	0.656	UPSTREAM CG9314 INTRON Hnf4 EXON CR44992	TF binding site mE1_TFBS_HSA
2L	1235085	2L_1235085_SNP [dm3] 2L_1235085_SNP [dm6]	C	T	2.848e^-4	0.656	INTERGENIC
3L	16724814	3L_16724814_SNP [dm3] 3L_16731714_SNP [dm6]	A	G	2.852e^-4	0.656	UPSTREAM Dbp73D INTERGENIC	TF binding site mE1_TFBS_HSA
2R	156485	2R_156485_SNP [dm3] 2R_4268980_SNP [dm6]	G	T	2.853e^-4	0.656	INTERGENIC
2L	17887866	2L_17887866_SNP [dm3] 2L_17887866_SNP [dm6]	T	A	2.859e^-4	0.656	INTERGENIC
2L	3245320	2L_3245320_SNP [dm3] 2L_3245320_SNP [dm6]	T	C	2.862e^-4	0.656	INTERGENIC
2L	8702856	2L_8702856_SNP [dm3] 2L_8702856_SNP [dm6]	A	T	2.862e^-4	0.656	UPSTREAM CR44992 INTRON Hnf4
3L	6688177	3L_6688177_SNP [dm3] 3L_6695077_SNP [dm6]	G	C	2.864e^-4	0.656	INTRON SP1173
2R	12543496	2R_12543496_SNP [dm3] 2R_16655991_SNP [dm6]	T	C	2.864e^-4	0.656	UPSTREAM Nach INTRON Picot	TF binding site mE1_TFBS_cad
X	11320928	X_11320928_MNP [dm3] X_11426895_MNP [dm6]	GCGG	TTTT	2.866e^-4	0.656	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11320932	X_11320932_INS [dm3] X_11426899_INS [dm6]	A	AAT	2.866e^-4	0.656	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13183392	3L_13183392_SNP [dm3] 3L_13190292_SNP [dm6]	A	T	2.867e^-4	0.656	INTERGENIC
3L	16015453	3L_16015453_SNP [dm3] 3L_16022353_SNP [dm6]	C	T	2.870e^-4	0.656	UPSTREAM CR43949 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
2R	13505970	2R_13505970_SNP [dm3] 2R_17618465_SNP [dm6]	C	A	2.873e^-4	0.656	UPSTREAM CG44403 INTRON CG10936
X	12364443	X_12364443_SNP [dm3] X_12470410_SNP [dm6]	C	T	2.874e^-4	0.656	INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	4730187	X_4730187_SNP [dm3] X_4836154_SNP [dm6]	C	A	2.876e^-4	0.656	INTERGENIC
2R	15296567	2R_15296567_SNP [dm3] 2R_19409062_SNP [dm6]	C	T	2.884e^-4	0.656	UTR_3_PRIME hts DOWNSTREAM hts INTRON hts
2L	17289532	2L_17289532_SNP [dm3] 2L_17289532_SNP [dm6]	A	C	2.892e^-4	0.656	INTERGENIC
3L	837662	3L_837662_SNP [dm3] 3L_837662_SNP [dm6]	A	C	2.901e^-4	0.656	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	795404	2L_795404_SNP [dm3] 2L_795404_SNP [dm6]	T	G	2.907e^-4	0.656	INTERGENIC
2R	19553896	2R_19553896_SNP [dm3] 2R_23666373_SNP [dm6]	C	T	2.907e^-4	0.656	UPSTREAM Pde8 INTRON Pde8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	9306338	3R_9306338_SNP [dm3] 3R_13480616_SNP [dm6]	T	A	2.908e^-4	0.656	INTERGENIC
2R	16301864	2R_16301864_SNP [dm3] 2R_20414359_SNP [dm6]	A	T	2.912e^-4	0.656	INTERGENIC
3L	3357940	3L_3357940_SNP [dm3] 3L_3357940_SNP [dm6]	G	T	2.920e^-4	0.656	INTRON kst	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
X	5489798	X_5489798_SNP [dm3] X_5595765_SNP [dm6]	A	T	2.922e^-4	0.656	INTRON Vsx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	18088174	3R_18088174_SNP [dm3] 3R_22262452_SNP [dm6]	T	A	2.928e^-4	0.656	INTRON SKIP
3R	18088205	3R_18088205_SNP [dm3] 3R_22262483_SNP [dm6]	C	G	2.928e^-4	0.656	INTRON SKIP
3L	6308984	3L_6308984_SNP [dm3] 3L_6315884_SNP [dm6]	C	A	2.945e^-4	0.656	INTERGENIC
2L	8697814	2L_8697814_SNP [dm3] 2L_8697814_SNP [dm6]	A	C	2.945e^-4	0.656	INTRON Hnf4
X	20215260	X_20215260_SNP [dm3] X_20344233_SNP [dm6]	A	C	2.946e^-4	0.656	INTERGENIC	transposable element FlyBase
2L	15469687	2L_15469687_SNP [dm3] 2L_15469687_SNP [dm6]	T	A	2.946e^-4	0.656	UPSTREAM CR45353 INTERGENIC
3R	21378606	3R_21378606_SNP [dm3] 3R_25552884_SNP [dm6]	C	A	2.951e^-4	0.656	INTRON msi	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	1072759	2L_1072759_SNP [dm3] 2L_1072759_SNP [dm6]	A	G	2.952e^-4	0.656	INTRON S
X	20272005	X_20272005_SNP [dm3] X_20400978_SNP [dm6]	A	T	2.957e^-4	0.656	SYNONYMOUS_CODING HERC2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	4091100	X_4091100_SNP [dm3] X_4197067_SNP [dm6]	G	C	2.958e^-4	0.656	INTRON Fas2
3R	19861584	3R_19861584_SNP [dm3] 3R_24035862_SNP [dm6]	T	C	2.958e^-4	0.656	SYNONYMOUS_CODING Miro	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	26042450	3R_26042450_SNP [dm3] 3R_30216728_SNP [dm6]	T	A	2.960e^-4	0.656	INTRON CecC
X	9844067	X_9844067_SNP [dm3] X_9950034_SNP [dm6]	A	G	2.962e^-4	0.656	INTERGENIC
2L	4306168	2L_4306168_SNP [dm3] 2L_4306168_SNP [dm6]	G	C	2.966e^-4	0.656	DOWNSTREAM tutl INTRON tutl	TF binding site mE1_TFBS_chinmo
3R	27140296	3R_27140296_SNP [dm3] 3R_31314574_SNP [dm6]	A	G	2.969e^-4	0.656	INTRON CG34347	TF binding site mE1_TFBS_chinmo
2L	16108963	2L_16108963_SNP [dm3] 2L_16108963_SNP [dm6]	G	C	2.972e^-4	0.656	INTERGENIC
3R	15117802	3R_15117802_SNP [dm3] 3R_19292080_SNP [dm6]	G	T	2.972e^-4	0.656	INTERGENIC
X	12364488	X_12364488_SNP [dm3] X_12470455_SNP [dm6]	G	A	2.974e^-4	0.656	INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14336335	2R_14336335_SNP [dm3] 2R_18448830_SNP [dm6]	C	T	2.976e^-4	0.656	SYNONYMOUS_CODING CG30120 UTR_3_PRIME CG5189 INTRON Prp19	TF binding site mE1_TFBS_cad
2R	5696479	2R_5696479_INS [dm3] 2R_9808974_INS [dm6]	T	TAT	2.976e^-4	0.656	INTERGENIC
X	1931082	X_1931082_SNP [dm3] X_2037049_SNP [dm6]	A	G	2.984e^-4	0.656	UPSTREAM Actn INTRON Actn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17892833	2R_17892833_SNP [dm3] 2R_22005328_SNP [dm6]	G	A	2.985e^-4	0.656	INTRON CG34370
2L	13736384	2L_13736384_SNP [dm3] 2L_13736384_SNP [dm6]	G	A	2.989e^-4	0.656	SYNONYMOUS_CODING CG31813	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1072797	2L_1072797_SNP [dm3] 2L_1072797_SNP [dm6]	T	A	2.995e^-4	0.656	INTRON S
2L	15247372	2L_15247372_SNP [dm3] 2L_15247372_SNP [dm6]	A	G	2.998e^-4	0.656	INTRON ZnT35C
3L	10866281	3L_10866281_SNP [dm3] 3L_10873181_SNP [dm6]	G	A	3.007e^-4	0.656	SYNONYMOUS_CODING tna	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13317500	3L_13317500_SNP [dm3] 3L_13324400_SNP [dm6]	A	C	3.011e^-4	0.656	EXON CR44558
2R	13769160	2R_13769160_SNP [dm3] 2R_17881655_SNP [dm6]	G	T	3.013e^-4	0.656	NON_SYNONYMOUS_CODING CG30110 INTRON Elk
2L	8696998	2L_8696998_SNP [dm3] 2L_8696998_SNP [dm6]	C	G	3.019e^-4	0.656	INTRON Hnf4	TF binding site mE1_TFBS_cnc
3L	4391241	3L_4391241_SNP [dm3] 3L_4391241_SNP [dm6]	A	T	3.023e^-4	0.656	INTRON slow	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	7278969	3R_7278969_SNP [dm3] 3R_11453247_SNP [dm6]	A	G	3.026e^-4	0.656	SYNONYMOUS_CODING PGRP-LB INTRON CG17230	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10774319	3L_10774319_SNP [dm3] 3L_10781219_SNP [dm6]	T	A	3.037e^-4	0.656	INTERGENIC
3L	16725080	3L_16725080_SNP [dm3] 3L_16731980_SNP [dm6]	C	T	3.041e^-4	0.656	INTERGENIC
X	18277888	X_18277888_SNP [dm3] X_18383855_SNP [dm6]	G	T	3.044e^-4	0.656	SYNONYMOUS_CODING betaCOP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5437561	3L_5437561_SNP [dm3] 3L_5444461_SNP [dm6]	C	T	3.046e^-4	0.656	INTERGENIC
2L	19970109	2L_19970109_SNP [dm3] 2L_19970109_SNP [dm6]	C	T	3.046e^-4	0.656	SYNONYMOUS_CODING CG43861 UTR_3_PRIME CG43861	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1564675	3L_1564675_SNP [dm3] 3L_1564675_SNP [dm6]	C	T	3.048e^-4	0.656	UPSTREAM CG12003 INTRON CG7879
3L	12424487	3L_12424487_SNP [dm3] 3L_12431387_SNP [dm6]	A	T	3.051e^-4	0.656	INTRON toe
X	17311190	X_17311190_SNP [dm3] X_17417157_SNP [dm6]	T	C	3.057e^-4	0.656	INTRON CG8611	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	411206	3L_411206_INS [dm3] 3L_411206_INS [dm6]	C	CA	3.059e^-4	0.656	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17935389	X_17935389_SNP [dm3] X_18041356_SNP [dm6]	A	G	3.061e^-4	0.656	INTRON Sh
2L	19731717	2L_19731717_DEL [dm3] 2L_19731717_DEL [dm6]	CC	C	3.068e^-4	0.656	UTR_3_PRIME Lar DOWNSTREAM CG10462 & 1 other
X	14841983	X_14841983_SNP [dm3] X_14947950_SNP [dm6]	A	G	3.072e^-4	0.656	INTRON pdgy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16325111	3L_16325111_SNP [dm3] 3L_16332011_SNP [dm6]	C	A	3.082e^-4	0.656	DOWNSTREAM CG33061 & 1 other INTRON retinin	TF binding site mE1_TFBS_cad
3L	16325141	3L_16325141_SNP [dm3] 3L_16332041_SNP [dm6]	A	T	3.082e^-4	0.656	DOWNSTREAM CG33061 & 1 other INTRON retinin	TF binding site mE1_TFBS_cad
X	18259014	X_18259014_SNP [dm3] X_18364981_SNP [dm6]	A	G	3.082e^-4	0.656	INTERGENIC
X	21161307	X_21161307_SNP [dm3] X_21290280_SNP [dm6]	T	A	3.085e^-4	0.656	SPLICE_SITE_REGION CG1494 INTRON CG1494
X	7615605	X_7615605_SNP [dm3] X_7721572_SNP [dm6]	T	C	3.091e^-4	0.656	UPSTREAM Hira INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7755171	2R_7755171_SNP [dm3] 2R_11867666_SNP [dm6]	A	G	3.091e^-4	0.656	DOWNSTREAM CG13185 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2R	14139160	2R_14139160_SNP [dm3] 2R_18251655_SNP [dm6]	G	A	3.098e^-4	0.656	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16890200	X_16890200_SNP [dm3] X_16996167_SNP [dm6]	A	T	3.100e^-4	0.656	INTRON CG45002
3R	991978	3R_991978_SNP [dm3] 3R_5166256_SNP [dm6]	T	C	3.104e^-4	0.656	SYNONYMOUS_CODING dpr16	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13315113	2L_13315113_SNP [dm3] 2L_13315113_SNP [dm6]	A	G	3.105e^-4	0.656	INTRON CG43778
3L	12290803	3L_12290803_SNP [dm3] 3L_12297703_SNP [dm6]	T	G	3.109e^-4	0.656	INTERGENIC
2L	2042552	2L_2042552_SNP [dm3] 2L_2042552_SNP [dm6]	G	A	3.110e^-4	0.656	SYNONYMOUS_CODING Su_dx_	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4429767	2L_4429767_SNP [dm3] 2L_4429767_SNP [dm6]	T	G	3.112e^-4	0.656	INTRON CG15431
3L	9111801	3L_9111801_SNP [dm3] 3L_9118701_SNP [dm6]	C	T	3.116e^-4	0.656	INTRON bol
2R	7077928	2R_7077928_SNP [dm3] 2R_11190423_SNP [dm6]	C	T	3.117e^-4	0.656	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	8391780	3L_8391780_SNP [dm3] 3L_8398680_SNP [dm6]	A	C	3.120e^-4	0.656	INTRON CG7120
2R	16314370	2R_16314370_SNP [dm3] 2R_20426865_SNP [dm6]	G	C	3.122e^-4	0.656	INTRON CG12484
X	12355327	X_12355327_SNP [dm3] X_12461294_SNP [dm6]	A	G	3.123e^-4	0.656	INTRON Rab40
2R	4756181	2R_4756181_SNP [dm3] 2R_8868676_SNP [dm6]	C	T	3.124e^-4	0.656	SYNONYMOUS_CODING RyR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	712501	3L_712501_SNP [dm3] 3L_712501_SNP [dm6]	C	G	3.127e^-4	0.656	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	2170084	3L_2170084_SNP [dm3] 3L_2170084_SNP [dm6]	A	C	3.128e^-4	0.656	SYNONYMOUS_CODING CG5704 UPSTREAM CG15879
2L	14259358	2L_14259358_SNP [dm3] 2L_14259358_SNP [dm6]	T	C	3.128e^-4	0.656	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	5137887	3R_5137887_SNP [dm3] 3R_9312165_SNP [dm6]	A	G	3.132e^-4	0.656	INTRON CG8861
3L	4737856	3L_4737856_SNP [dm3] 3L_4737856_SNP [dm6]	G	T	3.134e^-4	0.656	INTRON RhoGEF64C
X	18213780	X_18213780_SNP [dm3] X_18319747_SNP [dm6]	C	T	3.135e^-4	0.656	INTRON CG6023	transposable element FlyBase
3R	21776763	3R_21776763_SNP [dm3] 3R_25951041_SNP [dm6]	T	G	3.137e^-4	0.656	INTRON CCAP-R	TF binding site mE1_TFBS_inv
3R	16350333	3R_16350333_SNP [dm3] 3R_20524611_SNP [dm6]	T	C	3.137e^-4	0.656	INTERGENIC	TF binding site mE1_TFBS_inv
2L	387696	2L_387696_SNP [dm3] 2L_387696_SNP [dm6]	T	A	3.138e^-4	0.656	DOWNSTREAM al INTERGENIC
2L	17886969	2L_17886969_SNP [dm3] 2L_17886969_SNP [dm6]	A	T	3.139e^-4	0.656	INTERGENIC
X	7618967	X_7618967_SNP [dm3] X_7724934_SNP [dm6]	T	C	3.144e^-4	0.656	SYNONYMOUS_CODING Hira
3L	4350031	3L_4350031_SNP [dm3] 3L_4350031_SNP [dm6]	G	T	3.145e^-4	0.656	INTRON Cip4
2L	606452	2L_606452_SNP [dm3] 2L_606452_SNP [dm6]	C	T	3.149e^-4	0.656	DOWNSTREAM CR43648 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2311636	X_2311636_SNP [dm3] X_2417603_SNP [dm6]	A	T	3.151e^-4	0.656	INTERGENIC	TF binding site mE1_TFBS_sens
3L	14817336	3L_14817336_SNP [dm3] 3L_14824236_SNP [dm6]	G	A	3.155e^-4	0.656	INTRON CG17839
2R	9147155	2R_9147155_SNP [dm3] 2R_13259650_SNP [dm6]	A	T	3.157e^-4	0.656	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3L	4709828	3L_4709828_SNP [dm3] 3L_4709828_SNP [dm6]	C	T	3.158e^-4	0.656	NON_SYNONYMOUS_CODING CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17590911	2R_17590911_SNP [dm3] 2R_21703406_SNP [dm6]	A	G	3.159e^-4	0.656	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
2L	19991069	2L_19991069_SNP [dm3] 2L_19991069_SNP [dm6]	C	T	3.172e^-4	0.656	INTRON CG43861
3R	4362491	3R_4362491_SNP [dm3] 3R_8536769_SNP [dm6]	A	G	3.174e^-4	0.656	INTERGENIC
X	17935682	X_17935682_SNP [dm3] X_18041649_SNP [dm6]	T	C	3.182e^-4	0.656	INTRON Sh
2R	14313122	2R_14313122_SNP [dm3] 2R_18425617_SNP [dm6]	C	G	3.183e^-4	0.656	UTR_3_PRIME CG5174 UPSTREAM CG12263 INTRON CG5174	TF binding site mE1_TFBS_inv
X	13934383	X_13934383_DEL [dm3] X_14040350_DEL [dm6]	TT	T	3.183e^-4	0.656	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8918491	X_8918491_SNP [dm3] X_9024458_SNP [dm6]	C	G	3.183e^-4	0.656	INTRON CR43836 & 1 other
X	13504220	X_13504220_SNP [dm3] X_13610187_SNP [dm6]	T	C	3.184e^-4	0.656	SYNONYMOUS_CODING Ndc80 DOWNSTREAM CG11178	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9920366	2L_9920366_INS [dm3] 2L_9920366_INS [dm6]	A	ATCA	3.186e^-4	0.656	UTR_5_PRIME CG4594 DOWNSTREAM CG4598
2R	15428091	2R_15428091_SNP [dm3] 2R_19540586_SNP [dm6]	C	A	3.192e^-4	0.656	INTRON sm
2R	17589839	2R_17589839_SNP [dm3] 2R_21702334_SNP [dm6]	A	T	3.194e^-4	0.656	INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
2L	17887872	2L_17887872_SNP [dm3] 2L_17887872_SNP [dm6]	G	A	3.196e^-4	0.656	INTERGENIC
3R	26595100	3R_26595100_SNP [dm3] 3R_30769378_SNP [dm6]	A	G	3.203e^-4	0.656	INTRON zfh1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17935662	X_17935662_SNP [dm3] X_18041629_SNP [dm6]	A	T	3.204e^-4	0.656	INTRON Sh
2R	8366265	2R_8366265_SNP [dm3] 2R_12478760_SNP [dm6]	A	C	3.209e^-4	0.656	INTRON Dh44-R2
2R	16052969	2R_16052969_SNP [dm3] 2R_20165464_SNP [dm6]	T	A	3.213e^-4	0.656	INTERGENIC
3R	21429161	3R_21429161_SNP [dm3] 3R_25603439_SNP [dm6]	A	G	3.214e^-4	0.656	UTR_3_PRIME msi INTRON ymp
X	2691441	X_2691441_SNP [dm3] X_2797408_SNP [dm6]	C	T	3.215e^-4	0.656	UPSTREAM w INTRON kirre
2L	15635050	2L_15635050_SNP [dm3] 2L_15635050_SNP [dm6]	T	G	3.218e^-4	0.656	DOWNSTREAM CG18480 INTERGENIC
3L	11911451	3L_11911451_SNP [dm3] 3L_11918351_SNP [dm6]	T	A	3.220e^-4	0.656	INTRON CG44837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
X	5251231	X_5251231_SNP [dm3] X_5357198_SNP [dm6]	G	A	3.221e^-4	0.656	INTRON SK
3L	18558269	3L_18558269_SNP [dm3] 3L_18565169_SNP [dm6]	A	G	3.221e^-4	0.656	INTRON AstC-R1
3R	26659810	3R_26659810_SNP [dm3] 3R_30834088_SNP [dm6]	A	C	3.223e^-4	0.656	INTRON CG15544
3L	1735476	3L_1735476_SNP [dm3] 3L_1735476_SNP [dm6]	A	G	3.223e^-4	0.656	SYNONYMOUS_CODING Oseg4 DOWNSTREAM CG18173	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	21441821	3R_21441821_SNP [dm3] 3R_25616099_SNP [dm6]	C	A	3.223e^-4	0.656	INTRON Npl4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	18688290	3L_18688290_SNP [dm3] 3L_18695190_SNP [dm6]	C	G	3.224e^-4	0.656	INTRON CG6893
2R	10511738	2R_10511738_SNP [dm3] 2R_14624233_SNP [dm6]	A	T	3.225e^-4	0.656	UPSTREAM snoRNA:Or-CD4 DOWNSTREAM snoRNA:Me28S-A992 & 3 others INTRON Uhg5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	17904309	2R_17904309_SNP [dm3] 2R_22016804_SNP [dm6]	T	A	3.229e^-4	0.656	INTRON CG34370
3L	5478024	3L_5478024_SNP [dm3] 3L_5484924_SNP [dm6]	G	T	3.230e^-4	0.656	INTERGENIC
3R	5452909	3R_5452909_SNP [dm3] 3R_9627187_SNP [dm6]	T	A	3.238e^-4	0.656	UPSTREAM CG8319 & 1 other INTERGENIC	TF binding site mE1_TFBS_ttk
2L	22297776	2L_22297776_SNP [dm3] 2L_22297776_SNP [dm6]	G	A	3.241e^-4	0.656	INTERGENIC	transposable element FlyBase
X	17152647	X_17152647_SNP [dm3] X_17258614_SNP [dm6]	C	G	3.244e^-4	0.656	UPSTREAM f INTRON f	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	5452775	3R_5452775_SNP [dm3] 3R_9627053_SNP [dm6]	T	G	3.249e^-4	0.656	UPSTREAM CG8319 & 1 other INTERGENIC
3L	5705590	3L_5705590_SNP [dm3] 3L_5712490_SNP [dm6]	A	G	3.249e^-4	0.656	UPSTREAM CG44521 INTRON sif	TF binding site mE1_TFBS_chinmo
3L	18018377	3L_18018377_SNP [dm3] 3L_18025277_SNP [dm6]	A	T	3.254e^-4	0.656	INTRON Eip75B
X	18264761	X_18264761_SNP [dm3] X_18370728_SNP [dm6]	A	T	3.256e^-4	0.656	UPSTREAM CrebB & 1 other INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	10068879	2L_10068879_SNP [dm3] 2L_10068879_SNP [dm6]	G	C	3.257e^-4	0.656	NON_SYNONYMOUS_CODING CG44153	TF binding site BDTNP1_TFBS_sna
2R	9906495	2R_9906495_SNP [dm3] 2R_14018990_SNP [dm6]	C	T	3.261e^-4	0.656	INTRON mam
2L	13412434	2L_13412434_SNP [dm3] 2L_13412434_SNP [dm6]	T	G	3.261e^-4	0.656	UPSTREAM CG16848 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
X	2688807	X_2688807_SNP [dm3] X_2794774_SNP [dm6]	T	G	3.268e^-4	0.656	INTRON kirre & 1 other	regulatory region REDfly_CRMs
3L	14835412	3L_14835412_SNP [dm3] 3L_14842312_SNP [dm6]	C	A	3.273e^-4	0.656	INTRON CG17839
2L	17720234	2L_17720234_INS [dm3] 2L_17720234_INS [dm6]	T	TATATGTGTGT...	3.277e^-4	0.656	INTRON CadN	TF binding site mE1_TFBS_inv
3L	13184096	3L_13184096_SNP [dm3] 3L_13190996_SNP [dm6]	G	A	3.278e^-4	0.656	INTERGENIC
3R	15972858	3R_15972858_SNP [dm3] 3R_20147136_SNP [dm6]	G	C	3.282e^-4	0.656	INTERGENIC
3L	712343	3L_712343_SNP [dm3] 3L_712343_SNP [dm6]	A	C	3.289e^-4	0.656	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	19742727	2L_19742727_SNP [dm3] 2L_19742727_SNP [dm6]	C	T	3.290e^-4	0.656	UPSTREAM CR44906 DOWNSTREAM CG10631 INTERGENIC
2R	10294490	2R_10294490_SNP [dm3] 2R_14406985_SNP [dm6]	G	A	3.292e^-4	0.656	INTERGENIC
3L	1857176	3L_1857176_SNP [dm3] 3L_1857176_SNP [dm6]	G	T	3.295e^-4	0.656	UTR_5_PRIME CG12024	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24357321	3R_24357321_SNP [dm3] 3R_28531599_SNP [dm6]	T	A	3.301e^-4	0.656	INTRON Ppn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	2167737	3L_2167737_SNP [dm3] 3L_2167737_SNP [dm6]	G	A	3.302e^-4	0.656	UTR_3_PRIME CG15879
2L	7100403	2L_7100403_SNP [dm3] 2L_7100403_SNP [dm6]	G	A	3.308e^-4	0.656	SYNONYMOUS_CODING Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	13249133	2L_13249133_SNP [dm3] 2L_13249133_SNP [dm6]	T	C	3.314e^-4	0.656	NON_SYNONYMOUS_CODING CG16820
X	9176344	X_9176344_SNP [dm3] X_9282311_SNP [dm6]	G	A	3.314e^-4	0.656	INTRON c11.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14176771	2L_14176771_SNP [dm3] 2L_14176771_SNP [dm6]	C	A	3.315e^-4	0.656	INTRON CG43333
3L	711857	3L_711857_SNP [dm3] 3L_711857_SNP [dm6]	A	C	3.315e^-4	0.656	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
X	4099366	X_4099366_SNP [dm3] X_4205333_SNP [dm6]	C	T	3.334e^-4	0.656	INTRON Fas2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	21895003	3R_21895003_SNP [dm3] 3R_26069281_SNP [dm6]	A	G	3.350e^-4	0.656	INTERGENIC
X	13476075	X_13476075_SNP [dm3] X_13582042_SNP [dm6]	C	A	3.350e^-4	0.656	INTRON Tango13
3L	1090689	3L_1090689_SNP [dm3] 3L_1090689_SNP [dm6]	C	A	3.351e^-4	0.656	INTRON bab1	regulatory region REDfly_CRMs
X	5229333	X_5229333_SNP [dm3] X_5335300_SNP [dm6]	C	T	3.378e^-4	0.656	DOWNSTREAM CanB INTERGENIC
2L	15132210	2L_15132210_SNP [dm3] 2L_15132210_SNP [dm6]	A	G	3.384e^-4	0.656	DOWNSTREAM tRNA:L:35C INTERGENIC
X	12432863	X_12432863_SNP [dm3] X_12538830_SNP [dm6]	T	G	3.388e^-4	0.656	INTRON CG43921
3R	25810683	3R_25810683_SNP [dm3] 3R_29984961_SNP [dm6]	A	T	3.394e^-4	0.656	INTRON CG7896
3R	25810685	3R_25810685_SNP [dm3] 3R_29984963_SNP [dm6]	T	C	3.394e^-4	0.656	INTRON CG7896
2L	578765	2L_578765_SNP [dm3] 2L_578765_SNP [dm6]	C	T	3.397e^-4	0.656	NON_SYNONYMOUS_CODING Pph13	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	12435444	3L_12435444_SNP [dm3] 3L_12442344_SNP [dm6]	C	A	3.397e^-4	0.656	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5882325	3L_5882325_SNP [dm3] 3L_5889225_SNP [dm6]	T	G	3.401e^-4	0.656	INTERGENIC
X	11988190	X_11988190_SNP [dm3] X_12094157_SNP [dm6]	G	T	3.404e^-4	0.656	INTRON CR43960 & 1 other
2L	1598600	2L_1598600_SNP [dm3] 2L_1598600_SNP [dm6]	A	T	3.406e^-4	0.656	INTRON haf & 1 other
2R	17892184	2R_17892184_SNP [dm3] 2R_22004679_SNP [dm6]	G	A	3.413e^-4	0.656	INTRON CG34370
2R	3177340	2R_3177340_SNP [dm3] 2R_7289835_SNP [dm6]	G	A	3.413e^-4	0.656	INTRON pwn
3L	18558276	3L_18558276_SNP [dm3] 3L_18565176_SNP [dm6]	G	A	3.421e^-4	0.656	INTRON AstC-R1
X	20227718	X_20227718_SNP [dm3] X_20356691_SNP [dm6]	A	G	3.421e^-4	0.656	INTERGENIC
2L	11388359	2L_11388359_SNP [dm3] 2L_11388359_SNP [dm6]	G	C	3.423e^-4	0.656	EXON CR43681	regulatory region REDfly_CRMs
2L	8448106	2L_8448106_SNP [dm3] 2L_8448106_SNP [dm6]	G	A	3.428e^-4	0.656	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15180587	2R_15180587_SNP [dm3] 2R_19293082_SNP [dm6]	G	A	3.430e^-4	0.656	UPSTREAM mip40 INTRON Tab2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1008948	3L_1008948_SNP [dm3] 3L_1008948_SNP [dm6]	T	A	3.434e^-4	0.656	INTRON trio
3L	5478023	3L_5478023_SNP [dm3] 3L_5484923_SNP [dm6]	A	T	3.434e^-4	0.656	INTERGENIC
X	6643082	X_6643082_INS [dm3] X_6749049_INS [dm6]	A	AACAGAGA	3.436e^-4	0.656	INTRON CG14439
3R	22781944	3R_22781944_SNP [dm3] 3R_26956222_SNP [dm6]	C	A	3.436e^-4	0.656	INTRON CG6330	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3L	3874445	3L_3874445_SNP [dm3] 3L_3874445_SNP [dm6]	T	G	3.437e^-4	0.656	INTERGENIC
2L	4458510	2L_4458510_SNP [dm3] 2L_4458510_SNP [dm6]	C	G	3.461e^-4	0.656	UPSTREAM snoRNA:Me18S-C1831 & 1 other DOWNSTREAM mRpL27 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	10895007	X_10895007_SNP [dm3] X_11000974_SNP [dm6]	A	G	3.462e^-4	0.656	INTRON CG42339
3R	11271695	3R_11271695_DEL [dm3] 3R_15445973_DEL [dm6]	AGC	A	3.470e^-4	0.656	INTRON AdamTS-A
2L	14146245	2L_14146245_SNP [dm3] 2L_14146245_SNP [dm6]	C	T	3.471e^-4	0.656	INTRON CG17341
2L	15635103	2L_15635103_SNP [dm3] 2L_15635103_SNP [dm6]	A	C	3.479e^-4	0.656	DOWNSTREAM CG18480 INTERGENIC
3R	25018686	3R_25018686_SNP [dm3] 3R_29192964_SNP [dm6]	A	T	3.487e^-4	0.656	INTRON CG14509
X	11727403	X_11727403_SNP [dm3] X_11833370_SNP [dm6]	A	T	3.492e^-4	0.656	UTR_3_PRIME rudhira INTRON rudhira
2L	702432	2L_702432_SNP [dm3] 2L_702432_SNP [dm6]	C	A	3.493e^-4	0.656	INTRON ds	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	18475352	2R_18475352_SNP [dm3] 2R_22587847_SNP [dm6]	G	C	3.496e^-4	0.656	INTRON dnr1
3R	22251346	3R_22251346_SNP [dm3] 3R_26425624_SNP [dm6]	G	T	3.506e^-4	0.656	UPSTREAM CG6503 INTRON CR31084 & 1 other
3L	6597658	3L_6597658_SNP [dm3] 3L_6604558_SNP [dm6]	G	T	3.508e^-4	0.656	UTR_3_PRIME zpg INTRON CG8368
2R	14881781	2R_14881781_DEL [dm3] 2R_18994276_DEL [dm6]	AAT	C	3.515e^-4	0.656	UPSTREAM snoRNA:abba-a INTRON tn
3R	11808750	3R_11808750_SNP [dm3] 3R_15983028_SNP [dm6]	A	G	3.517e^-4	0.656	SYNONYMOUS_CODING Hel89B	TF binding site mE1_TFBS_cad
2R	3072957	2R_3072957_SNP [dm3] 2R_7185452_SNP [dm6]	C	T	3.518e^-4	0.656	DOWNSTREAM CG30384 INTRON pk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8448676	2L_8448676_SNP [dm3] 2L_8448676_SNP [dm6]	G	T	3.519e^-4	0.656	SYNONYMOUS_CODING U26
3R	27132176	3R_27132176_SNP [dm3] 3R_31306454_SNP [dm6]	A	T	3.527e^-4	0.656	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12696827	2R_12696827_SNP [dm3] 2R_16809322_SNP [dm6]	C	A	3.529e^-4	0.656	INTERGENIC
3L	14293158	3L_14293158_SNP [dm3] 3L_14300058_SNP [dm6]	A	C	3.537e^-4	0.656	INTRON fz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13264790	X_13264790_SNP [dm3] X_13370757_SNP [dm6]	C	T	3.541e^-4	0.656	UTR_5_PRIME CG1640 UPSTREAM CG1640 DOWNSTREAM dmrt11E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15308481	3L_15308481_SNP [dm3] 3L_15315381_SNP [dm6]	G	A	3.546e^-4	0.656	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	8429017	3R_8429017_SNP [dm3] 3R_12603295_SNP [dm6]	A	T	3.547e^-4	0.656	INTERGENIC
3L	1857150	3L_1857150_SNP [dm3] 3L_1857150_SNP [dm6]	A	G	3.548e^-4	0.656	UPSTREAM CG12024 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10924785	2L_10924785_SNP [dm3] 2L_10924785_SNP [dm6]	G	C	3.550e^-4	0.656	INTRON dpr2
2L	6540420	2L_6540420_SNP [dm3] 2L_6540420_SNP [dm6]	T	G	3.558e^-4	0.656	INTRON eya
3R	26490513	3R_26490513_SNP [dm3] 3R_30664791_SNP [dm6]	C	A	3.562e^-4	0.656	EXON CR45191
3R	4487071	3R_4487071_SNP [dm3] 3R_8661349_SNP [dm6]	T	C	3.567e^-4	0.656	NON_SYNONYMOUS_CODING p UPSTREAM bel
2L	1598601	2L_1598601_SNP [dm3] 2L_1598601_SNP [dm6]	A	G	3.569e^-4	0.656	INTRON haf & 1 other
3R	8429011	3R_8429011_SNP [dm3] 3R_12603289_SNP [dm6]	A	G	3.576e^-4	0.656	INTERGENIC
3R	24362223	3R_24362223_SNP [dm3] 3R_28536501_SNP [dm6]	C	T	3.585e^-4	0.656	INTRON Ppn
3L	15308611	3L_15308611_SNP [dm3] 3L_15315511_SNP [dm6]	T	C	3.591e^-4	0.656	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
X	10544076	X_10544076_SNP [dm3] X_10650043_SNP [dm6]	C	T	3.591e^-4	0.656	INTRON X11Lbeta
2L	1239576	2L_1239576_SNP [dm3] 2L_1239576_SNP [dm6]	A	T	3.597e^-4	0.656	UPSTREAM CG5397 INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.265e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.03921
In_3R_K	0.04366

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	5.697	0.0579

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2487 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	8.772e^-8	0.164	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12355297	X_12355297_SNP [dm3] X_12461264_SNP [dm6]	C	A	6.193e^-7	0.38	INTRON Rab40
X	2926734	X_2926734_SNP [dm3] X_3032701_SNP [dm6]	C	A	6.757e^-7	0.38	INTRON kirre
X	2926031	X_2926031_SNP [dm3] X_3031998_SNP [dm6]	C	A	1.271e^-6	0.38	INTRON kirre
2R	12282058	2R_12282058_SNP [dm3] 2R_16394553_SNP [dm6]	G	A	1.292e^-6	0.38	INTRON Sema-2b
3L	4737859	3L_4737859_SNP [dm3] 3L_4737859_SNP [dm6]	A	G	1.720e^-6	0.38	INTRON RhoGEF64C
X	2926747	X_2926747_SNP [dm3] X_3032714_SNP [dm6]	G	A	2.014e^-6	0.38	INTRON kirre
X	12355375	X_12355375_SNP [dm3] X_12461342_SNP [dm6]	T	C	2.144e^-6	0.38	INTRON Rab40
X	21160839	X_21160839_SNP [dm3] X_21289812_SNP [dm6]	T	C	2.195e^-6	0.38	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4737896	3L_4737896_SNP [dm3] 3L_4737896_SNP [dm6]	G	A	2.418e^-6	0.38	INTRON RhoGEF64C
3R	4415773	3R_4415773_SNP [dm3] 3R_8590051_SNP [dm6]	G	T	2.457e^-6	0.38	INTRON 5-HT2B	TF binding site mE1_TFBS_cad
3L	6100247	3L_6100247_SNP [dm3] 3L_6107147_SNP [dm6]	C	T	2.577e^-6	0.38	INTRON Ets65A	TF binding site mE1_TFBS_cad
X	12355327	X_12355327_SNP [dm3] X_12461294_SNP [dm6]	A	G	2.793e^-6	0.38	INTRON Rab40
3R	4415784	3R_4415784_SNP [dm3] 3R_8590062_SNP [dm6]	C	T	3.216e^-6	0.38	INTRON 5-HT2B	TF binding site mE1_TFBS_cad
3R	4415796	3R_4415796_SNP [dm3] 3R_8590074_SNP [dm6]	C	A	3.216e^-6	0.38	INTRON 5-HT2B	TF binding site mE1_TFBS_cad
2L	22306203	2L_22306203_SNP [dm3] 2L_22306203_SNP [dm6]	T	C	3.239e^-6	0.38	INTERGENIC
3L	4737895	3L_4737895_SNP [dm3] 3L_4737895_SNP [dm6]	A	G	4.302e^-6	0.425	INTRON RhoGEF64C
X	21160844	X_21160844_SNP [dm3] X_21289817_SNP [dm6]	G	C	4.638e^-6	0.425	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12355302	X_12355302_SNP [dm3] X_12461269_SNP [dm6]	A	G	4.723e^-6	0.425	INTRON Rab40
2R	13950559	2R_13950559_SNP [dm3] 2R_18063054_SNP [dm6]	A	T	4.732e^-6	0.425	INTRON CG34386
2R	14678270	2R_14678270_SNP [dm3] 2R_18790765_SNP [dm6]	T	C	4.760e^-6	0.425	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6100199	3L_6100199_SNP [dm3] 3L_6107099_SNP [dm6]	C	T	5.021e^-6	0.428	INTRON Ets65A	TF binding site mE1_TFBS_cad
X	12355400	X_12355400_SNP [dm3] X_12461367_SNP [dm6]	A	T	5.960e^-6	0.445	INTRON Rab40
X	8785031	X_8785031_SNP [dm3] X_8890998_SNP [dm6]	G	T	6.324e^-6	0.445	INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	6100265	3L_6100265_SNP [dm3] 3L_6107165_SNP [dm6]	C	T	6.355e^-6	0.445	INTRON Ets65A	TF binding site mE1_TFBS_cad
X	12356558	X_12356558_SNP [dm3] X_12462525_SNP [dm6]	C	T	6.796e^-6	0.445	UPSTREAM Rab40 INTRON Rab40	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3L	7072423	3L_7072423_SNP [dm3] 3L_7079323_SNP [dm6]	C	A	7.119e^-6	0.445	INTERGENIC
X	12355350	X_12355350_SNP [dm3] X_12461317_SNP [dm6]	T	C	7.406e^-6	0.445	INTRON Rab40
X	20227751	X_20227751_INS [dm3] X_20356724_INS [dm6]	C	CGC	7.809e^-6	0.445	INTERGENIC
3L	4841343	3L_4841343_SNP [dm3] 3L_4841343_SNP [dm6]	A	C	7.853e^-6	0.445	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	4004096	3L_4004096_SNP [dm3] 3L_4004096_SNP [dm6]	G	T	7.984e^-6	0.445	INTRON CG14985
3R	27128046	3R_27128046_SNP [dm3] 3R_31302324_SNP [dm6]	C	T	8.367e^-6	0.445	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_inv
X	12356565	X_12356565_SNP [dm3] X_12462532_SNP [dm6]	C	A	8.380e^-6	0.445	UPSTREAM Rab40 & 1 other INTRON Rab40	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
X	12355383	X_12355383_SNP [dm3] X_12461350_SNP [dm6]	T	A	8.506e^-6	0.445	INTRON Rab40
3L	3835090	3L_3835090_INS [dm3] 3L_3835090_INS [dm6]	A	AATATAACTATC...	8.591e^-6	0.445	INTRON enc
3L	7071913	3L_7071913_SNP [dm3] 3L_7078813_SNP [dm6]	A	C	8.794e^-6	0.445	INTERGENIC
3L	20721773	3L_20721773_SNP [dm3] 3L_20728673_SNP [dm6]	T	C	8.899e^-6	0.445	DOWNSTREAM CR43945 INTERGENIC
3L	6100268	3L_6100268_SNP [dm3] 3L_6107168_SNP [dm6]	G	C	9.017e^-6	0.445	INTRON Ets65A	TF binding site mE1_TFBS_cad
3R	24829701	3R_24829701_SNP [dm3] 3R_29003979_SNP [dm6]	C	G	9.367e^-6	0.45	INTRON wat
X	2926643	X_2926643_SNP [dm3] X_3032610_SNP [dm6]	C	T	1.017e^-5	0.465	INTRON kirre
X	2926636	X_2926636_SNP [dm3] X_3032603_SNP [dm6]	T	A	1.053e^-5	0.465	INTRON kirre
2R	16435589	2R_16435589_SNP [dm3] 2R_20548084_SNP [dm6]	A	G	1.089e^-5	0.465	NON_SYNONYMOUS_CODING Obp57e UPSTREAM CG30148 DOWNSTREAM Cpr57A & 1 other
3R	8388326	3R_8388326_SNP [dm3] 3R_12562604_SNP [dm6]	C	T	1.099e^-5	0.465	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
2R	1926921	2R_1926921_SNP [dm3] 2R_6039416_SNP [dm6]	C	G	1.111e^-5	0.465	INTRON CG14591
2R	14452456	2R_14452456_SNP [dm3] 2R_18564951_SNP [dm6]	G	A	1.116e^-5	0.465	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	9147422	2R_9147422_SNP [dm3] 2R_13259917_SNP [dm6]	A	T	1.150e^-5	0.469	UPSTREAM CG42319 INTERGENIC
2R	12696827	2R_12696827_SNP [dm3] 2R_16809322_SNP [dm6]	C	A	1.186e^-5	0.473	INTERGENIC
X	21063578	X_21063578_SNP [dm3] X_21192551_SNP [dm6]	G	A	1.237e^-5	0.483	UPSTREAM CG14579 INTERGENIC
3L	6100256	3L_6100256_SNP [dm3] 3L_6107156_SNP [dm6]	A	C	1.369e^-5	0.514	INTRON Ets65A	TF binding site mE1_TFBS_cad
X	16609443	X_16609443_SNP [dm3] X_16715410_SNP [dm6]	C	A	1.370e^-5	0.514	INTRON CG34325
X	4513872	X_4513872_INS [dm3] X_4619839_INS [dm6]	CG	ATCTCTTATT	1.422e^-5	0.52	INTRON peb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	14678243	2R_14678243_SNP [dm3] 2R_18790738_SNP [dm6]	A	T	1.443e^-5	0.52	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4349280	3R_4349280_SNP [dm3] 3R_8523558_SNP [dm6]	T	C	1.493e^-5	0.522	UPSTREAM CG31259 DOWNSTREAM CG31454 INTERGENIC
3R	19217624	3R_19217624_SNP [dm3] 3R_23391902_SNP [dm6]	G	A	1.504e^-5	0.522	INTERGENIC
X	12355441	X_12355441_SNP [dm3] X_12461408_SNP [dm6]	T	C	1.537e^-5	0.524	INTRON Rab40
X	12356628	X_12356628_SNP [dm3] X_12462595_SNP [dm6]	C	G	1.565e^-5	0.524	UPSTREAM Rab40 & 1 other INTRON Rab40	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3L	8391972	3L_8391972_SNP [dm3] 3L_8398872_SNP [dm6]	A	T	1.861e^-5	0.601	INTRON CG7120
3L	10756244	3L_10756244_SNP [dm3] 3L_10763144_SNP [dm6]	A	G	1.870e^-5	0.601	INTERGENIC
X	16609430	X_16609430_SNP [dm3] X_16715397_SNP [dm6]	A	T	1.892e^-5	0.601	INTRON CG34325
3R	10807182	3R_10807182_INS [dm3] 3R_14981460_INS [dm6]	A	ATCGTATCCTAAGA...	2.057e^-5	0.627	INTERGENIC
3R	20396321	3R_20396321_SNP [dm3] 3R_24570599_SNP [dm6]	T	A	2.112e^-5	0.627	INTRON CG13624
3L	14835265	3L_14835265_SNP [dm3] 3L_14842165_SNP [dm6]	T	C	2.125e^-5	0.627	INTRON CG17839
3L	11277473	3L_11277473_SNP [dm3] 3L_11284373_SNP [dm6]	G	A	2.141e^-5	0.627	UPSTREAM CR45404 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	9147438	2R_9147438_SNP [dm3] 2R_13259933_SNP [dm6]	G	A	2.148e^-5	0.627	UPSTREAM CG42319 INTERGENIC
X	16609445	X_16609445_DEL [dm3] X_16715412_DEL [dm6]	ATCCATACA	A	2.180e^-5	0.627	INTRON CG34325
2R	20139803	2R_20139803_SNP [dm3] 2R_24252280_SNP [dm6]	A	T	2.206e^-5	0.627	UPSTREAM Ir60a DOWNSTREAM snoRNA:Me18S-A1597 INTRON nord
3R	9959340	3R_9959340_SNP [dm3] 3R_14133618_SNP [dm6]	C	T	2.253e^-5	0.631	INTERGENIC
2R	19726701	2R_19726701_SNP [dm3] 2R_23839178_SNP [dm6]	C	T	2.313e^-5	0.638	UTR_3_PRIME CG5549 DOWNSTREAM snoRNA:Psi18S-176
X	10443026	X_10443026_SNP [dm3] X_10548993_SNP [dm6]	C	T	2.380e^-5	0.643	INTRON spri
X	9508220	X_9508220_DEL [dm3] X_9614187_DEL [dm6]	CGATCTTGGGGC...	C	2.400e^-5	0.643	INTRON CG42797
X	12355444	X_12355444_SNP [dm3] X_12461411_SNP [dm6]	C	T	2.458e^-5	0.649	INTRON Rab40
3L	9661340	3L_9661340_SNP [dm3] 3L_9668240_SNP [dm6]	C	G	2.677e^-5	0.679	INTRON fry	TF binding site mE1_TFBS_cad
2R	13092522	2R_13092522_SNP [dm3] 2R_17205017_SNP [dm6]	C	A	2.680e^-5	0.679	UPSTREAM CG43237 INTERGENIC
3R	15325922	3R_15325922_INS [dm3] 3R_19500200_INS [dm6]	A	AGATTCTTCTTAAA...	2.710e^-5	0.679	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	15518672	X_15518672_SNP [dm3] X_15624639_SNP [dm6]	G	A	2.715e^-5	0.679	INTRON sog	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8697403	2L_8697403_SNP [dm3] 2L_8697403_SNP [dm6]	T	G	2.883e^-5	0.683	INTRON Hnf4
X	9441548	X_9441548_SNP [dm3] X_9547515_SNP [dm6]	T	G	2.921e^-5	0.683	INTRON CG32700
3L	13870686	3L_13870686_SNP [dm3] 3L_13877586_SNP [dm6]	T	G	3.036e^-5	0.683	INTRON dysc
X	19019176	X_19019176_SNP [dm3] X_19125143_SNP [dm6]	C	A	3.098e^-5	0.683	UTR_3_PRIME tgy UPSTREAM CG15882 DOWNSTREAM tgy
X	4293464	X_4293464_SNP [dm3] X_4399431_SNP [dm6]	C	G	3.147e^-5	0.683	INTRON CR32773
3R	27127740	3R_27127740_SNP [dm3] 3R_31302018_SNP [dm6]	G	C	3.149e^-5	0.683	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24829734	3R_24829734_SNP [dm3] 3R_29004012_SNP [dm6]	A	G	3.208e^-5	0.683	INTRON wat
X	10543785	X_10543785_SNP [dm3] X_10649752_SNP [dm6]	T	C	3.212e^-5	0.683	INTRON X11Lbeta
3R	16890386	3R_16890386_SNP [dm3] 3R_21064664_SNP [dm6]	A	G	3.345e^-5	0.683	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3R	16890622	3R_16890622_SNP [dm3] 3R_21064900_SNP [dm6]	G	A	3.427e^-5	0.683	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3R	4487071	3R_4487071_SNP [dm3] 3R_8661349_SNP [dm6]	T	C	3.454e^-5	0.683	NON_SYNONYMOUS_CODING p UPSTREAM bel
X	20227718	X_20227718_SNP [dm3] X_20356691_SNP [dm6]	A	G	3.456e^-5	0.683	INTERGENIC
X	20227733	X_20227733_SNP [dm3] X_20356706_SNP [dm6]	C	T	3.461e^-5	0.683	INTERGENIC
2L	8370779	2L_8370779_SNP [dm3] 2L_8370779_SNP [dm6]	A	G	3.471e^-5	0.683	START_GAINED CG17292 UTR_5_PRIME CG17292 UPSTREAM CR45341 DOWNSTREAM Pp2A-29B INTRON CG17292
3L	14835275	3L_14835275_INS [dm3] 3L_14842175_INS [dm6]	T	TTGCAA	3.514e^-5	0.683	INTRON CG17839
2L	10785598	2L_10785598_SNP [dm3] 2L_10785598_SNP [dm6]	A	T	3.570e^-5	0.683	INTRON CG31869 EXON CR44582
2R	14452462	2R_14452462_SNP [dm3] 2R_18564957_SNP [dm6]	A	C	3.600e^-5	0.683	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18712002	3L_18712002_SNP [dm3] 3L_18718902_SNP [dm6]	A	T	3.670e^-5	0.683	INTERGENIC
3L	7369219	3L_7369219_SNP [dm3] 3L_7376119_SNP [dm6]	G	C	3.684e^-5	0.683	INTRON SMSr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	9147435	2R_9147435_SNP [dm3] 2R_13259930_SNP [dm6]	T	A	3.729e^-5	0.683	UPSTREAM CG42319 INTERGENIC
2L	17891617	2L_17891617_SNP [dm3] 2L_17891617_SNP [dm6]	C	T	3.746e^-5	0.683	INTERGENIC
3R	24439707	3R_24439707_SNP [dm3] 3R_28613985_SNP [dm6]	C	G	3.776e^-5	0.683	NON_SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad
3L	4534444	3L_4534444_SNP [dm3] 3L_4534444_SNP [dm6]	C	A	3.827e^-5	0.683	INTRON CG11353
2R	10970044	2R_10970044_SNP [dm3] 2R_15082539_SNP [dm6]	A	G	3.832e^-5	0.683	INTERGENIC
3L	14931260	3L_14931260_SNP [dm3] 3L_14938160_SNP [dm6]	G	C	3.863e^-5	0.683	INTRON DCX-EMAP
X	14227406	X_14227406_SNP [dm3] X_14333373_SNP [dm6]	T	C	3.953e^-5	0.683	INTRON dpr8
2L	17333598	2L_17333598_SNP [dm3] 2L_17333598_SNP [dm6]	G	A	4.022e^-5	0.683	INTERGENIC
3R	16890626	3R_16890626_SNP [dm3] 3R_21064904_SNP [dm6]	A	T	4.044e^-5	0.683	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
2R	14448722	2R_14448722_SNP [dm3] 2R_18561217_SNP [dm6]	A	G	4.044e^-5	0.683	INTRON GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	4737892	3L_4737892_SNP [dm3] 3L_4737892_SNP [dm6]	T	C	4.104e^-5	0.683	INTRON RhoGEF64C
X	15181963	X_15181963_SNP [dm3] X_15287930_SNP [dm6]	G	T	4.114e^-5	0.683	INTERGENIC
3R	26678179	3R_26678179_SNP [dm3] 3R_30852457_SNP [dm6]	A	G	4.234e^-5	0.683	UTR_5_PRIME tll	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	9489608	X_9489608_SNP [dm3] X_9595575_SNP [dm6]	G	A	4.242e^-5	0.683	DOWNSTREAM CR45543 INTERGENIC
3L	16983323	3L_16983323_SNP [dm3] 3L_16990223_SNP [dm6]	A	G	4.324e^-5	0.683	INTRON Exn
2L	7207266	2L_7207266_SNP [dm3] 2L_7207266_SNP [dm6]	T	A	4.446e^-5	0.683	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784
3R	16891371	3R_16891371_SNP [dm3] 3R_21065649_SNP [dm6]	G	T	4.470e^-5	0.683	UPSTREAM AnxB9 INTRON AnxB9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	4.523e^-5	0.683	INTRON dnc
2L	3437649	2L_3437649_SNP [dm3] 2L_3437649_SNP [dm6]	A	T	4.559e^-5	0.683	INTERGENIC
3L	7309978	3L_7309978_SNP [dm3] 3L_7316878_SNP [dm6]	G	T	4.653e^-5	0.683	INTERGENIC
3L	19345200	3L_19345200_DEL [dm3] 3L_19352100_DEL [dm6]	GT	A	4.682e^-5	0.683	INTRON CG32206
3L	4737951	3L_4737951_SNP [dm3] 3L_4737951_SNP [dm6]	C	A	4.705e^-5	0.683	INTRON RhoGEF64C
2L	1239660	2L_1239660_SNP [dm3] 2L_1239660_SNP [dm6]	G	A	4.759e^-5	0.683	UPSTREAM CG5397 INTERGENIC
3L	8391974	3L_8391974_SNP [dm3] 3L_8398874_SNP [dm6]	G	A	4.839e^-5	0.683	INTRON CG7120
X	4088847	X_4088847_SNP [dm3] X_4194814_SNP [dm6]	T	G	4.857e^-5	0.683	INTRON Fas2
2L	15469667	2L_15469667_SNP [dm3] 2L_15469667_SNP [dm6]	T	G	4.894e^-5	0.683	UPSTREAM CR45353 INTERGENIC
3R	10496273	3R_10496273_SNP [dm3] 3R_14670551_SNP [dm6]	G	A	4.932e^-5	0.683	SYNONYMOUS_CODING Meltrin	TF binding site mE1_TFBS_cad
2L	1320120	2L_1320120_SNP [dm3] 2L_1320120_SNP [dm6]	T	G	4.939e^-5	0.683	INTERGENIC
2L	14689608	2L_14689608_SNP [dm3] 2L_14689608_SNP [dm6]	A	G	4.951e^-5	0.683	UPSTREAM osp INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	24829722	3R_24829722_SNP [dm3] 3R_29004000_SNP [dm6]	T	C	4.956e^-5	0.683	INTRON wat
2R	12281986	2R_12281986_SNP [dm3] 2R_16394481_SNP [dm6]	A	T	5.059e^-5	0.683	INTRON Sema-2b
2R	18091512	2R_18091512_SNP [dm3] 2R_22204007_SNP [dm6]	A	G	5.073e^-5	0.683	SYNONYMOUS_CODING CG3292 DOWNSTREAM CR45376
2R	6588137	2R_6588137_SNP [dm3] 2R_10700632_SNP [dm6]	C	T	5.080e^-5	0.683	INTRON stan
2L	12207911	2L_12207911_SNP [dm3] 2L_12207911_SNP [dm6]	T	A	5.130e^-5	0.683	UTR_5_PRIME CG31759 UPSTREAM CG31759 INTRON aret
2L	12260510	2L_12260510_SNP [dm3] 2L_12260510_SNP [dm6]	T	C	5.143e^-5	0.683	INTRON aret
3L	7309976	3L_7309976_SNP [dm3] 3L_7316876_SNP [dm6]	G	A	5.157e^-5	0.683	INTERGENIC
2L	13211544	2L_13211544_SNP [dm3] 2L_13211544_SNP [dm6]	T	C	5.176e^-5	0.683	NON_SYNONYMOUS_CODING CG15482 DOWNSTREAM Pect & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5229317	X_5229317_SNP [dm3] X_5335284_SNP [dm6]	C	T	5.178e^-5	0.683	DOWNSTREAM CanB INTERGENIC
3L	11728415	3L_11728415_SNP [dm3] 3L_11735315_SNP [dm6]	C	T	5.187e^-5	0.683	UTR_3_PRIME CG6024 DOWNSTREAM CG6024
X	18636057	X_18636057_SNP [dm3] X_18742024_SNP [dm6]	T	G	5.277e^-5	0.683	INTERGENIC
X	16567528	X_16567528_SNP [dm3] X_16673495_SNP [dm6]	A	T	5.312e^-5	0.683	UPSTREAM CG13012 INTRON CG13012
3L	2683655	3L_2683655_SNP [dm3] 3L_2683655_SNP [dm6]	A	G	5.319e^-5	0.683	INTRON Fife
2L	735370	2L_735370_SNP [dm3] 2L_735370_SNP [dm6]	C	G	5.328e^-5	0.683	INTERGENIC
3L	14561384	3L_14561384_SNP [dm3] 3L_14568284_SNP [dm6]	G	A	5.401e^-5	0.683	DOWNSTREAM CG42758 INTERGENIC
3R	27125093	3R_27125093_SNP [dm3] 3R_31299371_SNP [dm6]	G	T	5.441e^-5	0.683	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	27100391	3R_27100391_DEL [dm3] 3R_31274669_DEL [dm6]	AA	A	5.479e^-5	0.683	INTERGENIC
X	18264596	X_18264596_SNP [dm3] X_18370563_SNP [dm6]	A	G	5.491e^-5	0.683	UPSTREAM CrebB & 1 other INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Trl
X	20425889	X_20425889_SNP [dm3] X_20554862_SNP [dm6]	A	T	5.575e^-5	0.683	INTRON RunxB
3L	14565106	3L_14565106_DEL [dm3] 3L_14572006_DEL [dm6]	TT	T	5.587e^-5	0.683	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14471217	3L_14471217_SNP [dm3] 3L_14478117_SNP [dm6]	T	C	5.589e^-5	0.683	INTRON bbg
2R	14448725	2R_14448725_SNP [dm3] 2R_18561220_SNP [dm6]	C	T	5.721e^-5	0.683	INTRON GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	27125014	3R_27125014_SNP [dm3] 3R_31299292_SNP [dm6]	G	T	5.739e^-5	0.683	INTERGENIC
3L	13310093	3L_13310093_INS [dm3] 3L_13316993_INS [dm6]	T	TAAGTCTTTTA...	5.754e^-5	0.683	INTERGENIC
3L	16983394	3L_16983394_SNP [dm3] 3L_16990294_SNP [dm6]	C	A	5.761e^-5	0.683	INTRON Exn
2R	14018530	2R_14018530_SNP [dm3] 2R_18131025_SNP [dm6]	T	C	5.764e^-5	0.683	SYNONYMOUS_CODING Hsf DOWNSTREAM Dip3
2L	12207912	2L_12207912_SNP [dm3] 2L_12207912_SNP [dm6]	A	G	5.800e^-5	0.683	START_GAINED CG31759 UTR_5_PRIME CG31759 UPSTREAM CG31759 INTRON aret
X	12356493	X_12356493_SNP [dm3] X_12462460_SNP [dm6]	T	A	5.873e^-5	0.683	UPSTREAM Rab40 INTRON Rab40	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2L	4292732	2L_4292732_SNP [dm3] 2L_4292732_SNP [dm6]	G	T	5.963e^-5	0.683	INTRON tutl
3L	3954093	3L_3954093_SNP [dm3] 3L_3954093_SNP [dm6]	A	T	5.969e^-5	0.683	DOWNSTREAM CG12605 INTERGENIC
X	10543654	X_10543654_DEL [dm3] X_10649621_DEL [dm6]	AACAAG	TT	5.990e^-5	0.683	INTRON X11Lbeta
3R	16890805	3R_16890805_SNP [dm3] 3R_21065083_SNP [dm6]	A	C	6.005e^-5	0.683	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
2L	17567821	2L_17567821_SNP [dm3] 2L_17567821_SNP [dm6]	T	C	6.017e^-5	0.683	INTERGENIC
X	12772793	X_12772793_SNP [dm3] X_12878760_SNP [dm6]	T	A	6.032e^-5	0.683	INTRON Pde9
3R	27125777	3R_27125777_SNP [dm3] 3R_31300055_SNP [dm6]	G	A	6.091e^-5	0.683	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	15325920	3R_15325920_SNP [dm3] 3R_19500198_SNP [dm6]	T	C	6.110e^-5	0.683	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19007092	2R_19007092_SNP [dm3] 2R_23119569_SNP [dm6]	G	T	6.111e^-5	0.683	INTERGENIC
3R	10435085	3R_10435085_SNP [dm3] 3R_14609363_SNP [dm6]	G	T	6.156e^-5	0.683	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	10310673	3R_10310673_SNP [dm3] 3R_14484951_SNP [dm6]	C	A	6.161e^-5	0.683	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	5115825	X_5115825_SNP [dm3] X_5221792_SNP [dm6]	A	G	6.183e^-5	0.683	INTRON CG15465 & 1 other
2R	11128731	2R_11128731_SNP [dm3] 2R_15241226_SNP [dm6]	A	G	6.188e^-5	0.683	UTR_5_PRIME Fs
3R	26700759	3R_26700759_SNP [dm3] 3R_30875037_SNP [dm6]	G	C	6.191e^-5	0.683	SYNONYMOUS_CODING CG15546	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14717198	2L_14717198_SNP [dm3] 2L_14717198_SNP [dm6]	A	T	6.197e^-5	0.683	INTERGENIC	TF binding site mE1_TFBS_cad
3R	15325911	3R_15325911_SNP [dm3] 3R_19500189_SNP [dm6]	A	C	6.326e^-5	0.683	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	3238864	2R_3238864_SNP [dm3] 2R_7351359_SNP [dm6]	A	T	6.329e^-5	0.683	INTRON Dscam1	TF binding site mE1_TFBS_inv
3R	27129738	3R_27129738_SNP [dm3] 3R_31304016_SNP [dm6]	G	A	6.336e^-5	0.683	SYNONYMOUS_CODING CG11340
3L	1857764	3L_1857764_SNP [dm3] 3L_1857764_SNP [dm6]	T	C	6.392e^-5	0.683	SYNONYMOUS_CODING CG12024	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12355417	X_12355417_SNP [dm3] X_12461384_SNP [dm6]	A	C	6.413e^-5	0.683	INTRON Rab40
3L	4715332	3L_4715332_SNP [dm3] 3L_4715332_SNP [dm6]	T	A	6.447e^-5	0.683	INTRON RhoGEF64C
2L	15355720	2L_15355720_SNP [dm3] 2L_15355720_SNP [dm6]	T	G	6.486e^-5	0.683	INTERGENIC
2L	19681910	2L_19681910_SNP [dm3] 2L_19681910_SNP [dm6]	A	C	6.572e^-5	0.683	INTRON Lar
X	13828560	X_13828560_SNP [dm3] X_13934527_SNP [dm6]	C	A	6.582e^-5	0.683	INTRON mamo	TF binding site mE1_TFBS_HSA
2L	1675714	2L_1675714_SNP [dm3] 2L_1675714_SNP [dm6]	T	A	6.585e^-5	0.683	INTRON chinmo
2L	1675720	2L_1675720_SNP [dm3] 2L_1675720_SNP [dm6]	C	G	6.585e^-5	0.683	INTRON chinmo
X	13265005	X_13265005_SNP [dm3] X_13370972_SNP [dm6]	G	A	6.606e^-5	0.683	UPSTREAM CG1640 DOWNSTREAM dmrt11E INTRON CG1640	TF binding site BDTNP1_TFBS_dl
3L	10331750	3L_10331750_INS [dm3] 3L_10338650_INS [dm6]	A	AA	6.610e^-5	0.683	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	11756868	X_11756868_SNP [dm3] X_11862835_SNP [dm6]	G	T	6.611e^-5	0.683	SYNONYMOUS_CODING ATP7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7002231	2L_7002231_SNP [dm3] 2L_7002231_SNP [dm6]	G	A	6.679e^-5	0.683	INTRON uif
3R	26678197	3R_26678197_SNP [dm3] 3R_30852475_SNP [dm6]	A	T	6.681e^-5	0.683	UTR_5_PRIME tll	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	15469662	2L_15469662_SNP [dm3] 2L_15469662_SNP [dm6]	A	T	6.738e^-5	0.683	UPSTREAM CR45353 INTERGENIC
2L	17877874	2L_17877874_SNP [dm3] 2L_17877874_SNP [dm6]	T	A	6.772e^-5	0.683	INTERGENIC
2R	9147218	2R_9147218_SNP [dm3] 2R_13259713_SNP [dm6]	T	A	6.787e^-5	0.683	UPSTREAM CG42319 INTERGENIC
X	14859049	X_14859049_INS [dm3] X_14965016_INS [dm6]	C	CTATAAATTTGC...	6.826e^-5	0.683	INTRON eag
3R	16891248	3R_16891248_SNP [dm3] 3R_21065526_SNP [dm6]	C	T	6.846e^-5	0.683	UPSTREAM AnxB9 INTRON AnxB9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
X	17321343	X_17321343_SNP [dm3] X_17427310_SNP [dm6]	C	G	6.904e^-5	0.683	INTRON CG12994 & 1 other	TF binding site mE1_TFBS_D
3L	2646310	3L_2646310_SNP [dm3] 3L_2646310_SNP [dm6]	T	C	6.914e^-5	0.683	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25435065	3R_25435065_SNP [dm3] 3R_29609343_SNP [dm6]	T	C	6.922e^-5	0.683	DOWNSTREAM Diedel2 INTRON alph
2R	9147482	2R_9147482_SNP [dm3] 2R_13259977_SNP [dm6]	A	G	7.019e^-5	0.684	UPSTREAM CG42319 INTERGENIC
2L	1135403	2L_1135403_SNP [dm3] 2L_1135403_SNP [dm6]	G	C	7.047e^-5	0.684	INTRON CG4577	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18418701	2R_18418701_SNP [dm3] 2R_22531196_SNP [dm6]	A	C	7.117e^-5	0.684	INTRON px
2R	18418702	2R_18418702_SNP [dm3] 2R_22531197_SNP [dm6]	C	A	7.117e^-5	0.684	INTRON px
2L	17567626	2L_17567626_SNP [dm3] 2L_17567626_SNP [dm6]	T	C	7.119e^-5	0.684	INTERGENIC
3R	26659810	3R_26659810_SNP [dm3] 3R_30834088_SNP [dm6]	A	C	7.164e^-5	0.684	INTRON CG15544
2L	19598306	2L_19598306_SNP [dm3] 2L_19598306_SNP [dm6]	A	T	7.302e^-5	0.684	INTRON Lar	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	14679288	X_14679288_SNP [dm3] X_14785255_SNP [dm6]	T	C	7.319e^-5	0.684	UTR_3_PRIME Ag5r
3L	16983298	3L_16983298_INS [dm3] 3L_16990198_INS [dm6]	A	AG	7.331e^-5	0.684	INTRON Exn
2R	13092562	2R_13092562_SNP [dm3] 2R_17205057_SNP [dm6]	T	C	7.422e^-5	0.684	UPSTREAM CG43237 INTERGENIC
2L	20687881	2L_20687881_SNP [dm3] 2L_20687881_SNP [dm6]	A	G	7.453e^-5	0.684	SYNONYMOUS_CODING Hr38	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4004107	3L_4004107_DEL [dm3] 3L_4004107_DEL [dm6]	CATTGCTTGTA...	C	7.454e^-5	0.684	INTRON CG14985
X	12748023	X_12748023_SNP [dm3] X_12853990_SNP [dm6]	G	A	7.473e^-5	0.684	INTRON Pde9
X	17321351	X_17321351_SNP [dm3] X_17427318_SNP [dm6]	A	G	7.492e^-5	0.684	INTRON CG12994 & 1 other	TF binding site mE1_TFBS_D
2L	13459264	2L_13459264_SNP [dm3] 2L_13459264_SNP [dm6]	T	C	7.495e^-5	0.684	UPSTREAM CR45684 & 1 other INTRON CG42784
3L	13310084	3L_13310084_DEL [dm3] 3L_13316984_DEL [dm6]	TA	T	7.523e^-5	0.684	INTERGENIC
2L	12207874	2L_12207874_SNP [dm3] 2L_12207874_SNP [dm6]	G	T	7.552e^-5	0.684	START_GAINED CG31759 UTR_5_PRIME CG31759 UPSTREAM CG31759 INTRON aret
2R	12543480	2R_12543480_DEL [dm3] 2R_16655975_DEL [dm6]	AA	G	7.630e^-5	0.687	UPSTREAM Nach INTRON Picot	TF binding site mE1_TFBS_cad
2R	14678389	2R_14678389_SNP [dm3] 2R_18790884_SNP [dm6]	C	A	7.699e^-5	0.687	NON_SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26659826	3R_26659826_SNP [dm3] 3R_30834104_SNP [dm6]	A	C	7.701e^-5	0.687	INTRON CG15544
3R	25212391	3R_25212391_SNP [dm3] 3R_29386669_SNP [dm6]	C	T	7.788e^-5	0.692	INTRON Ptp99A	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
3L	1564675	3L_1564675_SNP [dm3] 3L_1564675_SNP [dm6]	C	T	7.853e^-5	0.692	UPSTREAM CG12003 INTRON CG7879
2L	957305	2L_957305_SNP [dm3] 2L_957305_SNP [dm6]	C	T	7.896e^-5	0.692	SYNONYMOUS_CODING CG4341
X	13504220	X_13504220_SNP [dm3] X_13610187_SNP [dm6]	T	C	7.935e^-5	0.692	SYNONYMOUS_CODING Ndc80 DOWNSTREAM CG11178	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2919154	2L_2919154_SNP [dm3] 2L_2919154_SNP [dm6]	A	G	7.947e^-5	0.692	INTRON lilli
2R	9147009	2R_9147009_SNP [dm3] 2R_13259504_SNP [dm6]	T	G	7.972e^-5	0.692	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
X	17321363	X_17321363_SNP [dm3] X_17427330_SNP [dm6]	A	C	8.062e^-5	0.695	INTRON CG12994 & 1 other	TF binding site mE1_TFBS_D
X	18636049	X_18636049_SNP [dm3] X_18742016_SNP [dm6]	G	A	8.102e^-5	0.695	INTERGENIC
3R	26261890	3R_26261890_SNP [dm3] 3R_30436168_SNP [dm6]	G	T	8.122e^-5	0.695	INTRON CG15537	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5703053	3L_5703053_SNP [dm3] 3L_5709953_SNP [dm6]	C	A	8.266e^-5	0.702	INTRON sif
3L	8391780	3L_8391780_SNP [dm3] 3L_8398680_SNP [dm6]	A	C	8.305e^-5	0.702	INTRON CG7120
3L	14293158	3L_14293158_SNP [dm3] 3L_14300058_SNP [dm6]	A	C	8.368e^-5	0.702	INTRON fz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1733121	3L_1733121_SNP [dm3] 3L_1733121_SNP [dm6]	A	G	8.374e^-5	0.702	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14154319	X_14154319_SNP [dm3] X_14260286_SNP [dm6]	G	C	8.385e^-5	0.702	UPSTREAM CG1461 INTERGENIC
2L	14716769	2L_14716769_SNP [dm3] 2L_14716769_SNP [dm6]	G	A	8.518e^-5	0.705	INTERGENIC
X	7617541	X_7617541_SNP [dm3] X_7723508_SNP [dm6]	C	A	8.619e^-5	0.705	SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	9920366	2L_9920366_INS [dm3] 2L_9920366_INS [dm6]	A	ATCA	8.624e^-5	0.705	UTR_5_PRIME CG4594 DOWNSTREAM CG4598
3L	5703242	3L_5703242_SNP [dm3] 3L_5710142_SNP [dm6]	A	T	8.667e^-5	0.705	INTRON sif
3L	21424490	3L_21424490_SNP [dm3] 3L_21431390_SNP [dm6]	A	C	8.677e^-5	0.705	SYNONYMOUS_CODING CG33288 INTRON barc	TF binding site mE1_TFBS_sens
2R	3178769	2R_3178769_SNP [dm3] 2R_7291264_SNP [dm6]	G	A	8.686e^-5	0.705	INTRON pwn	TF binding site mE1_TFBS_cad
3L	20748682	3L_20748682_SNP [dm3] 3L_20755582_SNP [dm6]	A	T	8.750e^-5	0.705	SPLICE_SITE_REGION CG33912 INTRON CG33912	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7207197	2L_7207197_SNP [dm3] 2L_7207197_SNP [dm6]	A	G	8.792e^-5	0.705	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784	TF binding site mE1_TFBS_sens
X	11740309	X_11740309_SNP [dm3] X_11846276_SNP [dm6]	C	T	8.878e^-5	0.705	UPSTREAM CG15740 INTERGENIC	TF binding site BDTNP1_TFBS_sna
X	15398405	X_15398405_SNP [dm3] X_15504372_SNP [dm6]	G	A	8.886e^-5	0.705	NON_SYNONYMOUS_CODING Gmap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3542235	3R_3542235_SNP [dm3] 3R_7716513_SNP [dm6]	C	T	8.891e^-5	0.705	INTERGENIC
3L	2644859	3L_2644859_SNP [dm3] 3L_2644859_SNP [dm6]	C	T	8.975e^-5	0.705	UPSTREAM CG1143 INTERGENIC
3L	9377935	3L_9377935_SNP [dm3] 3L_9384835_SNP [dm6]	A	G	9.017e^-5	0.705	UTR_3_PRIME Hsp27 DOWNSTREAM CR43483	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	13570329	3R_13570329_SNP [dm3] 3R_17744607_SNP [dm6]	A	C	9.055e^-5	0.705	INTRON TyrRII	TF binding site mE1_TFBS_cad
3R	18821060	3R_18821060_SNP [dm3] 3R_22995338_SNP [dm6]	G	A	9.088e^-5	0.705	INTRON Nha2
3R	17953623	3R_17953623_SNP [dm3] 3R_22127901_SNP [dm6]	T	C	9.127e^-5	0.705	INTRON CG42390
3L	7309972	3L_7309972_SNP [dm3] 3L_7316872_SNP [dm6]	A	G	9.157e^-5	0.705	INTERGENIC
X	17321292	X_17321292_DEL [dm3] X_17427259_DEL [dm6]	AA	A	9.160e^-5	0.705	INTRON CG12994 & 1 other	TF binding site mE1_TFBS_D
3L	1565411	3L_1565411_SNP [dm3] 3L_1565411_SNP [dm6]	C	T	9.193e^-5	0.705	START_GAINED CG12003 UTR_5_PRIME CG12003 INTRON CG7879	TF binding site mE1_TFBS_sens
X	15671878	X_15671878_SNP [dm3] X_15777845_SNP [dm6]	G	A	9.253e^-5	0.705	NON_SYNONYMOUS_CODING CG43672
3L	1901310	3L_1901310_SNP [dm3] 3L_1901310_SNP [dm6]	C	T	9.286e^-5	0.705	UTR_3_PRIME CG1887 INTRON CG1887	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
2L	376777	2L_376777_SNP [dm3] 2L_376777_SNP [dm6]	G	A	9.286e^-5	0.705	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	10544076	X_10544076_SNP [dm3] X_10650043_SNP [dm6]	C	T	9.303e^-5	0.705	INTRON X11Lbeta
3L	6172130	3L_6172130_SNP [dm3] 3L_6179030_SNP [dm6]	G	T	9.358e^-5	0.705	UTR_3_PRIME CG10274 DOWNSTREAM CG7376
2R	9147038	2R_9147038_SNP [dm3] 2R_13259533_SNP [dm6]	G	A	9.365e^-5	0.705	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3R	18780271	3R_18780271_SNP [dm3] 3R_22954549_SNP [dm6]	G	A	9.438e^-5	0.708	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	5217081	3L_5217081_SNP [dm3] 3L_5223981_SNP [dm6]	A	G	9.534e^-5	0.711	INTRON shep
2L	4863592	2L_4863592_SNP [dm3] 2L_4863592_SNP [dm6]	C	G	9.587e^-5	0.711	INTRON pog
X	15422778	X_15422778_SNP [dm3] X_15528745_SNP [dm6]	T	A	9.597e^-5	0.711	INTRON Ac13E
3R	17713182	3R_17713182_SNP [dm3] 3R_21887460_SNP [dm6]	G	T	9.687e^-5	0.713	UTR_5_PRIME CG6678 UPSTREAM dnd
X	7618993	X_7618993_SNP [dm3] X_7724960_SNP [dm6]	G	C	9.769e^-5	0.713	SYNONYMOUS_CODING Hira
2R	16998506	2R_16998506_SNP [dm3] 2R_21111001_SNP [dm6]	A	G	9.872e^-5	0.713	INTRON ktub
2L	17878645	2L_17878645_SNP [dm3] 2L_17878645_SNP [dm6]	G	C	9.965e^-5	0.713	INTERGENIC
3L	13187242	3L_13187242_MNP [dm3] 3L_13194142_MNP [dm6]	AGT	GAC	9.976e^-5	0.713	INTERGENIC
2L	15959956	2L_15959956_SNP [dm3] 2L_15959956_SNP [dm6]	G	C	1.003e^-4	0.713	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
2R	9147010	2R_9147010_SNP [dm3] 2R_13259505_SNP [dm6]	T	G	1.004e^-4	0.713	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
X	1931082	X_1931082_SNP [dm3] X_2037049_SNP [dm6]	A	G	1.012e^-4	0.713	UPSTREAM Actn INTRON Actn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14825235	3R_14825235_SNP [dm3] 3R_18999513_SNP [dm6]	A	G	1.013e^-4	0.713	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1857609	3L_1857609_SNP [dm3] 3L_1857609_SNP [dm6]	A	G	1.017e^-4	0.713	NON_SYNONYMOUS_CODING CG12024	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5216125	3L_5216125_SNP [dm3] 3L_5223025_SNP [dm6]	C	T	1.017e^-4	0.713	INTRON shep
2L	1598629	2L_1598629_SNP [dm3] 2L_1598629_SNP [dm6]	C	T	1.018e^-4	0.713	INTRON haf & 1 other
2L	19737343	2L_19737343_SNP [dm3] 2L_19737343_SNP [dm6]	G	T	1.018e^-4	0.713	DOWNSTREAM Nf-YB INTERGENIC
3L	3954116	3L_3954116_SNP [dm3] 3L_3954116_SNP [dm6]	T	A	1.024e^-4	0.713	DOWNSTREAM CG12605 INTERGENIC
X	18502007	X_18502007_INS [dm3] X_18607974_INS [dm6]	G	GATCTGGTTG	1.025e^-4	0.713	CODON_INSERTION CG15040	TF binding site mE1_TFBS_chinmo
X	15264242	X_15264242_SNP [dm3] X_15370209_SNP [dm6]	T	C	1.025e^-4	0.713	INTRON acj6
X	14062691	X_14062691_SNP [dm3] X_14168658_SNP [dm6]	A	C	1.027e^-4	0.713	UPSTREAM CG12480 INTERGENIC
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	1.036e^-4	0.717	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4715335	3L_4715335_SNP [dm3] 3L_4715335_SNP [dm6]	T	C	1.045e^-4	0.717	INTRON RhoGEF64C
2L	13315135	2L_13315135_SNP [dm3] 2L_13315135_SNP [dm6]	A	C	1.048e^-4	0.717	INTRON CG43778
2L	19584230	2L_19584230_SNP [dm3] 2L_19584230_SNP [dm6]	T	A	1.053e^-4	0.717	UPSTREAM CG10366 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	3188996	2R_3188996_SNP [dm3] 2R_7301491_SNP [dm6]	T	A	1.054e^-4	0.717	DOWNSTREAM pwn INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	19742727	2L_19742727_SNP [dm3] 2L_19742727_SNP [dm6]	C	T	1.056e^-4	0.717	UPSTREAM CR44906 DOWNSTREAM CG10631 INTERGENIC
X	18634633	X_18634633_SNP [dm3] X_18740600_SNP [dm6]	T	C	1.069e^-4	0.721	UPSTREAM CG6873 INTERGENIC
2R	3188279	2R_3188279_DEL [dm3] 2R_7300774_DEL [dm6]	CCAACGACATGGGTTTAC...	C	1.071e^-4	0.721	UTR_3_PRIME pwn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	8956566	X_8956566_SNP [dm3] X_9062533_SNP [dm6]	T	A	1.074e^-4	0.721	INTRON CG15365
3R	25588806	3R_25588806_SNP [dm3] 3R_29763084_SNP [dm6]	A	G	1.084e^-4	0.726	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18869962	2L_18869962_SNP [dm3] 2L_18869962_SNP [dm6]	C	T	1.089e^-4	0.726	INTRON tup	TF binding site BDTNP1_TFBS_dl
2R	20658290	2R_20658290_DEL [dm3] 2R_24770767_DEL [dm6]	TG	T	1.093e^-4	0.727	UTR_3_PRIME Eps-15 INTRON Eps-15	TF binding site BDTNP1_TFBS_prd
2L	15360695	2L_15360695_SNP [dm3] 2L_15360695_SNP [dm6]	C	T	1.102e^-4	0.729	DOWNSTREAM CG15258 INTERGENIC
2L	2863631	2L_2863631_SNP [dm3] 2L_2863631_SNP [dm6]	G	T	1.104e^-4	0.729	INTRON CG2991	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7921595	3L_7921595_SNP [dm3] 3L_7928495_SNP [dm6]	C	T	1.108e^-4	0.729	SYNONYMOUS_CODING syd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6344531	2R_6344531_SNP [dm3] 2R_10457026_SNP [dm6]	C	T	1.118e^-4	0.729	INTRON Galphao & 1 other	TF binding site mE1_TFBS_inv
3L	14813879	3L_14813879_SNP [dm3] 3L_14820779_SNP [dm6]	A	T	1.128e^-4	0.729	INTRON CG17839
3R	26673127	3R_26673127_SNP [dm3] 3R_30847405_SNP [dm6]	T	G	1.130e^-4	0.729	INTERGENIC
2R	13176679	2R_13176679_SNP [dm3] 2R_17289174_SNP [dm6]	G	C	1.147e^-4	0.729	INTRON mbl
3L	12450024	3L_12450024_SNP [dm3] 3L_12456924_SNP [dm6]	G	A	1.163e^-4	0.729	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	7867859	2R_7867859_SNP [dm3] 2R_11980354_SNP [dm6]	C	T	1.165e^-4	0.729	SYNONYMOUS_CODING CG30037 DOWNSTREAM CG33145	TF binding site mE1_TFBS_cad
3L	11276715	3L_11276715_SNP [dm3] 3L_11283615_SNP [dm6]	A	C	1.167e^-4	0.729	INTERGENIC
3L	11276725	3L_11276725_SNP [dm3] 3L_11283625_SNP [dm6]	A	T	1.167e^-4	0.729	INTERGENIC
3L	14561228	3L_14561228_SNP [dm3] 3L_14568128_SNP [dm6]	T	G	1.171e^-4	0.729	UTR_3_PRIME CG42758
2R	16787149	2R_16787149_INS [dm3] 2R_20899644_INS [dm6]	G	GAAAACCCATTG...	1.171e^-4	0.729	INTRON otp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	8702856	2L_8702856_SNP [dm3] 2L_8702856_SNP [dm6]	A	T	1.181e^-4	0.729	UPSTREAM CR44992 INTRON Hnf4
3L	3680552	3L_3680552_SNP [dm3] 3L_3680552_SNP [dm6]	C	T	1.189e^-4	0.729	INTERGENIC	TF binding site mE1_TFBS_cad
2L	15960063	2L_15960063_SNP [dm3] 2L_15960063_SNP [dm6]	G	A	1.192e^-4	0.729	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
X	18636703	X_18636703_SNP [dm3] X_18742670_SNP [dm6]	A	T	1.195e^-4	0.729	INTERGENIC
3R	21378606	3R_21378606_SNP [dm3] 3R_25552884_SNP [dm6]	C	A	1.196e^-4	0.729	INTRON msi	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	8419001	3L_8419001_SNP [dm3] 3L_8425901_SNP [dm6]	T	C	1.199e^-4	0.729	INTRON Cbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3R	4354693	3R_4354693_SNP [dm3] 3R_8528971_SNP [dm6]	C	T	1.200e^-4	0.729	UPSTREAM CG11741 INTERGENIC	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	4375176	3R_4375176_SNP [dm3] 3R_8549454_SNP [dm6]	C	A	1.202e^-4	0.729	INTERGENIC
X	14859243	X_14859243_SNP [dm3] X_14965210_SNP [dm6]	G	A	1.202e^-4	0.729	INTRON eag
2L	6069891	2L_6069891_SNP [dm3] 2L_6069891_SNP [dm6]	G	T	1.205e^-4	0.729	NON_SYNONYMOUS_CODING CG9154 DOWNSTREAM CG13993	TF binding site mE1_TFBS_sens
2R	15296567	2R_15296567_SNP [dm3] 2R_19409062_SNP [dm6]	C	T	1.213e^-4	0.729	UTR_3_PRIME hts DOWNSTREAM hts INTRON hts
2R	12543496	2R_12543496_SNP [dm3] 2R_16655991_SNP [dm6]	T	C	1.218e^-4	0.729	UPSTREAM Nach INTRON Picot	TF binding site mE1_TFBS_cad
2L	15272294	2L_15272294_SNP [dm3] 2L_15272294_SNP [dm6]	G	T	1.221e^-4	0.729	UPSTREAM Cul3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	9147034	2R_9147034_SNP [dm3] 2R_13259529_SNP [dm6]	G	T	1.236e^-4	0.729	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3L	14299077	3L_14299077_SNP [dm3] 3L_14305977_SNP [dm6]	G	T	1.237e^-4	0.729	INTRON fz
2L	20687872	2L_20687872_SNP [dm3] 2L_20687872_SNP [dm6]	T	C	1.240e^-4	0.729	SYNONYMOUS_CODING Hr38	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13187316	3L_13187316_SNP [dm3] 3L_13194216_SNP [dm6]	A	T	1.252e^-4	0.729	INTERGENIC
3L	1858022	3L_1858022_SNP [dm3] 3L_1858022_SNP [dm6]	C	T	1.253e^-4	0.729	SYNONYMOUS_CODING CG12024	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1858401	3L_1858401_SNP [dm3] 3L_1858401_SNP [dm6]	A	G	1.253e^-4	0.729	UTR_3_PRIME CG12024 DOWNSTREAM R	TF binding site mE1_TFBS_cad
3R	18088425	3R_18088425_SNP [dm3] 3R_22262703_SNP [dm6]	G	A	1.254e^-4	0.729	INTRON SKIP
2L	15349755	2L_15349755_SNP [dm3] 2L_15349755_SNP [dm6]	A	C	1.256e^-4	0.729	INTERGENIC
3R	24926199	3R_24926199_SNP [dm3] 3R_29100477_SNP [dm6]	C	T	1.257e^-4	0.729	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	22269213	X_22269213_INS [dm3] X_22867377_INS [dm6]	T	TATGTATGTAT...	1.257e^-4	0.729	INTRON CG42346	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	14678570	2R_14678570_SNP [dm3] 2R_18791065_SNP [dm6]	C	T	1.285e^-4	0.729	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16567553	X_16567553_SNP [dm3] X_16673520_SNP [dm6]	T	G	1.302e^-4	0.729	UPSTREAM CG13012 INTRON CG13012
3L	9735039	3L_9735039_SNP [dm3] 3L_9741939_SNP [dm6]	A	T	1.306e^-4	0.729	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13231432	2R_13231432_SNP [dm3] 2R_17343927_SNP [dm6]	C	T	1.308e^-4	0.729	INTRON mbl
3L	428271	3L_428271_SNP [dm3] 3L_428271_SNP [dm6]	T	A	1.314e^-4	0.729	INTERGENIC
2R	13769160	2R_13769160_SNP [dm3] 2R_17881655_SNP [dm6]	G	T	1.315e^-4	0.729	NON_SYNONYMOUS_CODING CG30110 INTRON Elk
3L	7477117	3L_7477117_SNP [dm3] 3L_7484017_SNP [dm6]	G	T	1.318e^-4	0.729	INTERGENIC
2L	20688391	2L_20688391_SNP [dm3] 2L_20688391_SNP [dm6]	T	C	1.336e^-4	0.729	INTRON Hr38	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1473544	2L_1473544_SNP [dm3] 2L_1473544_SNP [dm6]	C	A	1.340e^-4	0.729	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	6938591	2L_6938591_SNP [dm3] 2L_6938591_SNP [dm6]	T	C	1.341e^-4	0.729	NON_SYNONYMOUS_CODING CG18304	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	7517430	3L_7517430_SNP [dm3] 3L_7524330_SNP [dm6]	C	A	1.342e^-4	0.729	INTRON ltl
2L	19681911	2L_19681911_SNP [dm3] 2L_19681911_SNP [dm6]	T	G	1.352e^-4	0.729	INTRON Lar
3R	26681935	3R_26681935_SNP [dm3] 3R_30856213_SNP [dm6]	T	A	1.359e^-4	0.729	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24356512	3R_24356512_SNP [dm3] 3R_28530790_SNP [dm6]	A	G	1.361e^-4	0.729	SYNONYMOUS_CODING Ppn	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10543748	X_10543748_SNP [dm3] X_10649715_SNP [dm6]	G	C	1.362e^-4	0.729	INTRON X11Lbeta
3L	5152613	3L_5152613_SNP [dm3] 3L_5159513_SNP [dm6]	T	C	1.362e^-4	0.729	UTR_3_PRIME shep
3L	16202260	3L_16202260_SNP [dm3] 3L_16209160_SNP [dm6]	A	C	1.367e^-4	0.729	INTERGENIC	TF binding site mE1_TFBS_cad
3L	14957100	3L_14957100_SNP [dm3] 3L_14964000_SNP [dm6]	T	G	1.369e^-4	0.729	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
3R	24439685	3R_24439685_SNP [dm3] 3R_28613963_SNP [dm6]	C	T	1.377e^-4	0.729	SYNONYMOUS_CODING CG10011	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	13308209	3L_13308209_INS [dm3] 3L_13315109_INS [dm6]	G	GCCAG	1.378e^-4	0.729	INTERGENIC
3L	11276693	3L_11276693_SNP [dm3] 3L_11283593_SNP [dm6]	A	G	1.388e^-4	0.729	INTERGENIC
2L	17791346	2L_17791346_SNP [dm3] 2L_17791346_SNP [dm6]	T	C	1.389e^-4	0.729	INTRON CadN2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17792863	2L_17792863_SNP [dm3] 2L_17792863_SNP [dm6]	C	A	1.389e^-4	0.729	INTRON CadN2 EXON CR43419	TF binding site mE1_TFBS_cad
X	5229333	X_5229333_SNP [dm3] X_5335300_SNP [dm6]	C	T	1.389e^-4	0.729	DOWNSTREAM CanB INTERGENIC
2L	19802428	2L_19802428_SNP [dm3] 2L_19802428_SNP [dm6]	A	G	1.395e^-4	0.729	INTRON sick
2R	11128680	2R_11128680_INS [dm3] 2R_15241175_INS [dm6]	T	TAAGCT	1.407e^-4	0.729	INTRON Fs
2R	9419296	2R_9419296_SNP [dm3] 2R_13531791_SNP [dm6]	T	C	1.419e^-4	0.729	INTRON Vmat
3R	19243589	3R_19243589_SNP [dm3] 3R_23417867_SNP [dm6]	G	A	1.420e^-4	0.729	INTRON CG4374
2L	17887868	2L_17887868_SNP [dm3] 2L_17887868_SNP [dm6]	A	T	1.424e^-4	0.729	INTERGENIC
X	18265153	X_18265153_SNP [dm3] X_18371120_SNP [dm6]	G	T	1.427e^-4	0.729	UTR_5_PRIME CrebB UPSTREAM CrebB INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	12898355	3R_12898355_SNP [dm3] 3R_17072633_SNP [dm6]	A	G	1.428e^-4	0.729	UTR_5_PRIME Ns1 UPSTREAM mRpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25912708	3R_25912708_SNP [dm3] 3R_30086986_SNP [dm6]	C	A	1.429e^-4	0.729	INTRON sima
3R	24045758	3R_24045758_SNP [dm3] 3R_28220036_SNP [dm6]	G	A	1.440e^-4	0.729	INTRON CG34354
X	18636445	X_18636445_DEL [dm3] X_18742412_DEL [dm6]	CC	C	1.440e^-4	0.729	INTERGENIC
2L	3720775	2L_3720775_SNP [dm3] 2L_3720775_SNP [dm6]	C	T	1.441e^-4	0.729	UPSTREAM Shaw INTRON Shaw
X	12355761	X_12355761_SNP [dm3] X_12461728_SNP [dm6]	G	A	1.442e^-4	0.729	SPLICE_SITE_REGION Rab40 INTRON Rab40
2R	11177864	2R_11177864_SNP [dm3] 2R_15290359_SNP [dm6]	A	G	1.447e^-4	0.729	INTRON Trpm
2R	12038628	2R_12038628_SNP [dm3] 2R_16151123_SNP [dm6]	A	T	1.448e^-4	0.729	INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	12896052	2L_12896052_SNP [dm3] 2L_12896052_SNP [dm6]	T	C	1.452e^-4	0.729	INTERGENIC
3L	9557212	3L_9557212_SNP [dm3] 3L_9564112_SNP [dm6]	A	T	1.454e^-4	0.729	INTRON CG42673
X	11756760	X_11756760_SNP [dm3] X_11862727_SNP [dm6]	C	T	1.462e^-4	0.729	SYNONYMOUS_CODING ATP7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7066775	2R_7066775_SNP [dm3] 2R_11179270_SNP [dm6]	G	C	1.468e^-4	0.729	INTRON shn	TF binding site mE1_TFBS_inv
2R	13477645	2R_13477645_SNP [dm3] 2R_17590140_SNP [dm6]	T	C	1.468e^-4	0.729	SPLICE_SITE_REGION RhoGAP54D SYNONYMOUS_CODING RhoGAP54D UPSTREAM icln	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	4306167	2L_4306167_SNP [dm3] 2L_4306167_SNP [dm6]	A	G	1.472e^-4	0.729	DOWNSTREAM tutl INTRON tutl	TF binding site mE1_TFBS_chinmo
3L	18575735	3L_18575735_SNP [dm3] 3L_18582635_SNP [dm6]	C	A	1.472e^-4	0.729	UPSTREAM CR45435 INTERGENIC
X	7618967	X_7618967_SNP [dm3] X_7724934_SNP [dm6]	T	C	1.473e^-4	0.729	SYNONYMOUS_CODING Hira
X	18636060	X_18636060_SNP [dm3] X_18742027_SNP [dm6]	G	T	1.481e^-4	0.729	INTERGENIC
3L	4709828	3L_4709828_SNP [dm3] 3L_4709828_SNP [dm6]	C	T	1.483e^-4	0.729	NON_SYNONYMOUS_CODING CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18381622	X_18381622_SNP [dm3] X_18487589_SNP [dm6]	G	A	1.486e^-4	0.729	UTR_3_PRIME CG15046 UPSTREAM psh
3L	20704905	3L_20704905_SNP [dm3] 3L_20711805_SNP [dm6]	T	G	1.488e^-4	0.729	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	2644337	3L_2644337_SNP [dm3] 3L_2644337_SNP [dm6]	T	A	1.490e^-4	0.729	UPSTREAM CG14949 INTERGENIC
3R	24494858	3R_24494858_SNP [dm3] 3R_28669136_SNP [dm6]	T	C	1.490e^-4	0.729	UPSTREAM CG33346 INTERGENIC
2L	19578251	2L_19578251_SNP [dm3] 2L_19578251_SNP [dm6]	G	A	1.492e^-4	0.729	NON_SYNONYMOUS_CODING msb1l UPSTREAM spi DOWNSTREAM CG10268	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	12080176	3R_12080176_SNP [dm3] 3R_16254454_SNP [dm6]	G	C	1.499e^-4	0.729	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	19731717	2L_19731717_DEL [dm3] 2L_19731717_DEL [dm6]	CC	C	1.500e^-4	0.729	UTR_3_PRIME Lar DOWNSTREAM CG10462 & 1 other
3R	12971257	3R_12971257_SNP [dm3] 3R_17145535_SNP [dm6]	A	C	1.502e^-4	0.729	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3R	12971260	3R_12971260_DEL [dm3] 3R_17145538_DEL [dm6]	AGGTAAGCATCCTA...	G	1.502e^-4	0.729	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
2L	15281202	2L_15281202_DEL [dm3] 2L_15281202_DEL [dm6]	CC	T	1.505e^-4	0.729	DOWNSTREAM CR45349 INTERGENIC
2R	4031122	2R_4031122_SNP [dm3] 2R_8143617_SNP [dm6]	T	C	1.522e^-4	0.729	INTRON Lpin	TF binding site mE1_TFBS_HSA
2R	12282201	2R_12282201_SNP [dm3] 2R_16394696_SNP [dm6]	C	G	1.527e^-4	0.729	INTRON Sema-2b
2R	13092538	2R_13092538_SNP [dm3] 2R_17205033_SNP [dm6]	A	G	1.527e^-4	0.729	UPSTREAM CG43237 INTERGENIC
2L	3992264	2L_3992264_SNP [dm3] 2L_3992264_SNP [dm6]	C	T	1.528e^-4	0.729	UPSTREAM fred INTERGENIC	TF binding site mE1_TFBS_Trl
X	14840917	X_14840917_SNP [dm3] X_14946884_SNP [dm6]	T	C	1.529e^-4	0.729	INTRON pdgy
X	22332583	X_22332583_SNP [dm3] X_22930747_SNP [dm6]	C	G	1.529e^-4	0.729	INTERGENIC
2R	18091509	2R_18091509_SNP [dm3] 2R_22204004_SNP [dm6]	C	G	1.532e^-4	0.729	SYNONYMOUS_CODING CG3292 DOWNSTREAM CR45376
2L	17891639	2L_17891639_SNP [dm3] 2L_17891639_SNP [dm6]	A	C	1.537e^-4	0.729	INTERGENIC
3R	26257987	3R_26257987_SNP [dm3] 3R_30432265_SNP [dm6]	G	A	1.546e^-4	0.729	DOWNSTREAM CG15533 INTRON CG15534	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6273662	3R_6273662_INS [dm3] 3R_10447940_INS [dm6]	C	CC	1.547e^-4	0.729	INTERGENIC
2R	9880313	2R_9880313_DEL [dm3] 2R_13992808_DEL [dm6]	TT	T	1.551e^-4	0.729	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	8696998	2L_8696998_SNP [dm3] 2L_8696998_SNP [dm6]	C	G	1.553e^-4	0.729	INTRON Hnf4	TF binding site mE1_TFBS_cnc
3L	1857653	3L_1857653_SNP [dm3] 3L_1857653_SNP [dm6]	C	T	1.554e^-4	0.729	SYNONYMOUS_CODING CG12024	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12079955	3R_12079955_INS [dm3] 3R_16254233_INS [dm6]	G	GCTG	1.555e^-4	0.729	INTRON tara	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	11756604	X_11756604_SNP [dm3] X_11862571_SNP [dm6]	T	C	1.560e^-4	0.729	SYNONYMOUS_CODING ATP7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5454906	2L_5454906_SNP [dm3] 2L_5454906_SNP [dm6]	C	T	1.560e^-4	0.729	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15959973	2L_15959973_SNP [dm3] 2L_15959973_SNP [dm6]	G	A	1.562e^-4	0.729	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
2R	9147155	2R_9147155_SNP [dm3] 2R_13259650_SNP [dm6]	A	T	1.563e^-4	0.729	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2R	18091905	2R_18091905_SNP [dm3] 2R_22204400_SNP [dm6]	G	T	1.566e^-4	0.729	SYNONYMOUS_CODING CG3292	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26615534	3R_26615534_SNP [dm3] 3R_30789812_SNP [dm6]	A	T	1.572e^-4	0.729	UTR_3_PRIME wts DOWNSTREAM zfh1
3L	8547757	3L_8547757_SNP [dm3] 3L_8554657_SNP [dm6]	A	T	1.576e^-4	0.729	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7718985	2L_7718985_SNP [dm3] 2L_7718985_SNP [dm6]	T	A	1.578e^-4	0.729	SYNONYMOUS_CODING CG13793 DOWNSTREAM CG13794
3L	14835301	3L_14835301_SNP [dm3] 3L_14842201_SNP [dm6]	T	A	1.582e^-4	0.729	INTRON CG17839
3L	19345168	3L_19345168_SNP [dm3] 3L_19352068_SNP [dm6]	A	G	1.586e^-4	0.729	INTRON CG32206
3R	26361338	3R_26361338_SNP [dm3] 3R_30535616_SNP [dm6]	C	A	1.589e^-4	0.729	INTRON tmod
3L	11167610	3L_11167610_SNP [dm3] 3L_11174510_SNP [dm6]	A	T	1.599e^-4	0.729	INTRON CG14142
3R	17712545	3R_17712545_SNP [dm3] 3R_21886823_SNP [dm6]	T	A	1.610e^-4	0.729	UPSTREAM CG6678 INTRON dnd
X	7617605	X_7617605_SNP [dm3] X_7723572_SNP [dm6]	A	T	1.612e^-4	0.729	NON_SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	14771287	3R_14771287_SNP [dm3] 3R_18945565_SNP [dm6]	C	A	1.616e^-4	0.729	INTRON CG42613
3R	17712546	3R_17712546_SNP [dm3] 3R_21886824_SNP [dm6]	A	T	1.619e^-4	0.729	UPSTREAM CG6678 INTRON dnd
2R	16921529	2R_16921529_SNP [dm3] 2R_21034024_SNP [dm6]	G	A	1.620e^-4	0.729	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	14830700	2R_14830700_SNP [dm3] 2R_18943195_SNP [dm6]	T	C	1.623e^-4	0.729	INTRON sano
2R	15596592	2R_15596592_SNP [dm3] 2R_19709087_SNP [dm6]	T	G	1.624e^-4	0.729	INTERGENIC
X	4094020	X_4094020_SNP [dm3] X_4199987_SNP [dm6]	T	C	1.627e^-4	0.729	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	1598680	2L_1598680_SNP [dm3] 2L_1598680_SNP [dm6]	C	A	1.632e^-4	0.729	INTRON haf & 1 other
3L	11532947	3L_11532947_SNP [dm3] 3L_11539847_SNP [dm6]	A	G	1.635e^-4	0.729	INTRON Mob2
2R	12696341	2R_12696341_SNP [dm3] 2R_16808836_SNP [dm6]	C	T	1.645e^-4	0.729	INTERGENIC
X	19995797	X_19995797_SNP [dm3] X_20101764_SNP [dm6]	C	A	1.649e^-4	0.729	INTERGENIC	transposable element FlyBase
2L	15469687	2L_15469687_SNP [dm3] 2L_15469687_SNP [dm6]	T	A	1.652e^-4	0.729	UPSTREAM CR45353 INTERGENIC
3L	11525398	3L_11525398_SNP [dm3] 3L_11532298_SNP [dm6]	C	T	1.652e^-4	0.729	INTRON Mob2
X	21161307	X_21161307_SNP [dm3] X_21290280_SNP [dm6]	T	A	1.655e^-4	0.729	SPLICE_SITE_REGION CG1494 INTRON CG1494
3R	17713026	3R_17713026_SNP [dm3] 3R_21887304_SNP [dm6]	C	T	1.667e^-4	0.729	UTR_5_PRIME CG6678 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1901306	3L_1901306_SNP [dm3] 3L_1901306_SNP [dm6]	T	C	1.667e^-4	0.729	UTR_3_PRIME CG1887 INTRON CG1887	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
X	18262665	X_18262665_SNP [dm3] X_18368632_SNP [dm6]	T	G	1.667e^-4	0.729	INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	8588349	2L_8588349_SNP [dm3] 2L_8588349_SNP [dm6]	C	A	1.670e^-4	0.729	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	17953466	3R_17953466_SNP [dm3] 3R_22127744_SNP [dm6]	C	A	1.674e^-4	0.729	INTRON CG42390
3R	25226172	3R_25226172_DEL [dm3] 3R_29400450_DEL [dm6]	ATTAAGTATCAA...	A	1.676e^-4	0.729	INTRON Ptp99A
2R	20948669	2R_20948669_DEL [dm3] 2R_25061146_DEL [dm6]	AG	A	1.686e^-4	0.729	UPSTREAM gsb INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1564511	3L_1564511_SNP [dm3] 3L_1564511_SNP [dm6]	A	G	1.687e^-4	0.729	UPSTREAM CG12003 INTRON CG7879
X	2700983	X_2700983_SNP [dm3] X_2806950_SNP [dm6]	G	A	1.688e^-4	0.729	INTRON kirre
3L	4081377	3L_4081377_SNP [dm3] 3L_4081377_SNP [dm6]	G	A	1.689e^-4	0.729	INTRON Gad1
3R	4391378	3R_4391378_SNP [dm3] 3R_8565656_SNP [dm6]	G	C	1.691e^-4	0.729	NON_SYNONYMOUS_CODING Cenp-C	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3R	25725233	3R_25725233_DEL [dm3] 3R_29899511_DEL [dm6]	TGT	T	1.691e^-4	0.729	DOWNSTREAM CG31038 INTRON CG31038
2L	13736384	2L_13736384_SNP [dm3] 2L_13736384_SNP [dm6]	G	A	1.691e^-4	0.729	SYNONYMOUS_CODING CG31813	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	19315413	X_19315413_SNP [dm3] X_19421380_SNP [dm6]	T	G	1.694e^-4	0.729	INTRON kek5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11756925	X_11756925_SNP [dm3] X_11862892_SNP [dm6]	T	C	1.710e^-4	0.729	INTRON ATP7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13187334	3L_13187334_SNP [dm3] 3L_13194234_SNP [dm6]	T	A	1.710e^-4	0.729	INTERGENIC
3L	13191848	3L_13191848_SNP [dm3] 3L_13198748_SNP [dm6]	T	C	1.712e^-4	0.729	INTERGENIC
3R	26661723	3R_26661723_SNP [dm3] 3R_30836001_SNP [dm6]	G	A	1.713e^-4	0.729	INTRON CG15544
3L	4169872	3L_4169872_SNP [dm3] 3L_4169872_SNP [dm6]	T	A	1.713e^-4	0.729	UPSTREAM Ero1L INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	17894354	2R_17894354_SNP [dm3] 2R_22006849_SNP [dm6]	A	G	1.718e^-4	0.729	INTRON CG34370
3R	18746227	3R_18746227_SNP [dm3] 3R_22920505_SNP [dm6]	G	C	1.721e^-4	0.729	INTRON klg
2R	12544583	2R_12544583_SNP [dm3] 2R_16657078_SNP [dm6]	C	T	1.730e^-4	0.729	SYNONYMOUS_CODING Picot	TF binding site mE1_TFBS_cad
2R	19726796	2R_19726796_INS [dm3] 2R_23839273_INS [dm6]	G	GGG	1.731e^-4	0.729	UTR_3_PRIME CG5549 DOWNSTREAM snoRNA:Psi18S-176
3L	9308411	3L_9308411_SNP [dm3] 3L_9315311_SNP [dm6]	G	T	1.736e^-4	0.729	INTERGENIC
3R	21584030	3R_21584030_SNP [dm3] 3R_25758308_SNP [dm6]	A	G	1.742e^-4	0.729	INTRON LpR1
3L	9661315	3L_9661315_SNP [dm3] 3L_9668215_SNP [dm6]	A	G	1.743e^-4	0.729	INTRON fry	TF binding site mE1_TFBS_cad
X	9949487	X_9949487_SNP [dm3] X_10055454_SNP [dm6]	A	G	1.747e^-4	0.729	UTR_3_PRIME Yp1 UPSTREAM CR45601 DOWNSTREAM CG15312
3L	18112916	3L_18112916_SNP [dm3] 3L_18119816_SNP [dm6]	A	C	1.752e^-4	0.729	UTR_5_PRIME CG7341 DOWNSTREAM CG32195	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7209138	2L_7209138_SNP [dm3] 2L_7209138_SNP [dm6]	A	C	1.754e^-4	0.729	INTRON CG13784
2R	16921212	2R_16921212_SNP [dm3] 2R_21033707_SNP [dm6]	T	C	1.768e^-4	0.729	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3L	14814091	3L_14814091_SNP [dm3] 3L_14820991_SNP [dm6]	G	A	1.772e^-4	0.729	INTRON CG17839
3L	14814092	3L_14814092_SNP [dm3] 3L_14820992_SNP [dm6]	T	A	1.772e^-4	0.729	INTRON CG17839
2L	638038	2L_638038_SNP [dm3] 2L_638038_SNP [dm6]	G	C	1.773e^-4	0.729	INTERGENIC
2R	13415564	2R_13415564_SNP [dm3] 2R_17528059_SNP [dm6]	G	A	1.776e^-4	0.729	SYNONYMOUS_CODING Patronin
3R	26255757	3R_26255757_INS [dm3] 3R_30430035_INS [dm6]	T	TC	1.776e^-4	0.729	INTRON CG15533	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19410469	3R_19410469_SNP [dm3] 3R_23584747_SNP [dm6]	G	A	1.777e^-4	0.729	INTERGENIC
3R	13600672	3R_13600672_SNP [dm3] 3R_17774950_SNP [dm6]	C	T	1.781e^-4	0.729	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2645600	3L_2645600_SNP [dm3] 3L_2645600_SNP [dm6]	A	T	1.782e^-4	0.729	INTRON CG1143	TF binding site mE1_TFBS_cad
X	20321835	X_20321835_SNP [dm3] X_20450808_SNP [dm6]	T	A	1.793e^-4	0.729	INTRON CG32506
2L	19576205	2L_19576205_SNP [dm3] 2L_19576205_SNP [dm6]	A	T	1.795e^-4	0.729	UPSTREAM spi INTRON spi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_zfh1
2R	12008608	2R_12008608_SNP [dm3] 2R_16121103_SNP [dm6]	G	A	1.802e^-4	0.729	SYNONYMOUS_CODING Jhe	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
X	12754429	X_12754429_SNP [dm3] X_12860396_SNP [dm6]	C	A	1.804e^-4	0.729	INTRON Pde9
2R	13832469	2R_13832469_SNP [dm3] 2R_17944964_SNP [dm6]	G	A	1.806e^-4	0.729	INTERGENIC
X	9489591	X_9489591_SNP [dm3] X_9595558_SNP [dm6]	A	T	1.812e^-4	0.729	DOWNSTREAM CR45543 INTERGENIC
X	14154365	X_14154365_DEL [dm3] X_14260332_DEL [dm6]	AA	C	1.818e^-4	0.729	UPSTREAM CG1461 INTERGENIC
X	16338314	X_16338314_SNP [dm3] X_16444281_SNP [dm6]	A	G	1.821e^-4	0.729	SYNONYMOUS_CODING rngo DOWNSTREAM eIF-2alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26659808	3R_26659808_INS [dm3] 3R_30834086_INS [dm6]	T	TC	1.824e^-4	0.729	INTRON CG15544
2L	2669602	2L_2669602_SNP [dm3] 2L_2669602_SNP [dm6]	G	T	1.826e^-4	0.729	UPSTREAM Gr23a INTERGENIC
X	4537412	X_4537412_SNP [dm3] X_4643379_SNP [dm6]	C	T	1.827e^-4	0.729	INTRON CG3081 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9377453	3L_9377453_SNP [dm3] 3L_9384353_SNP [dm6]	T	C	1.827e^-4	0.729	SYNONYMOUS_CODING Hsp27	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	20561531	X_20561531_SNP [dm3] X_20690504_SNP [dm6]	A	T	1.830e^-4	0.729	UPSTREAM run EXON CR45610	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	14665878	X_14665878_SNP [dm3] X_14771845_SNP [dm6]	G	T	1.830e^-4	0.729	INTERGENIC
X	18381462	X_18381462_SNP [dm3] X_18487429_SNP [dm6]	T	A	1.834e^-4	0.729	UPSTREAM psh DOWNSTREAM CG15046 INTERGENIC
2R	13092566	2R_13092566_SNP [dm3] 2R_17205061_SNP [dm6]	C	T	1.839e^-4	0.729	UPSTREAM CG43237 INTERGENIC
3R	4340520	3R_4340520_SNP [dm3] 3R_8514798_SNP [dm6]	T	A	1.840e^-4	0.729	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	1857176	3L_1857176_SNP [dm3] 3L_1857176_SNP [dm6]	G	T	1.843e^-4	0.729	UTR_5_PRIME CG12024	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12476419	2R_12476419_SNP [dm3] 2R_16588914_SNP [dm6]	G	A	1.846e^-4	0.729	SYNONYMOUS_CODING CG8311 DOWNSTREAM CG8306	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13185081	3L_13185081_SNP [dm3] 3L_13191981_SNP [dm6]	T	C	1.848e^-4	0.729	INTERGENIC
2R	11976055	2R_11976055_SNP [dm3] 2R_16088550_SNP [dm6]	C	A	1.851e^-4	0.729	INTRON Dg
2L	3992216	2L_3992216_SNP [dm3] 2L_3992216_SNP [dm6]	A	T	1.854e^-4	0.729	UPSTREAM fred INTERGENIC	TF binding site mE1_TFBS_Trl
3L	20171451	3L_20171451_SNP [dm3] 3L_20178351_SNP [dm6]	T	C	1.867e^-4	0.729	INTRON CG42674
X	4091094	X_4091094_DEL [dm3] X_4197061_DEL [dm6]	AAA	A	1.868e^-4	0.729	INTRON Fas2
2L	13441898	2L_13441898_SNP [dm3] 2L_13441898_SNP [dm6]	C	G	1.881e^-4	0.729	INTRON CG42784 EXON CR45683
2R	6585491	2R_6585491_SNP [dm3] 2R_10697986_SNP [dm6]	C	T	1.882e^-4	0.729	INTRON stan
3L	16202254	3L_16202254_SNP [dm3] 3L_16209154_SNP [dm6]	C	T	1.883e^-4	0.729	INTERGENIC	TF binding site mE1_TFBS_cad
3R	15072766	3R_15072766_INS [dm3] 3R_19247044_INS [dm6]	A	ACCATAACTTAGAGGACCA...	1.884e^-4	0.729	UPSTREAM unc79 DOWNSTREAM CG5217 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21849370	2L_21849370_SNP [dm3] 2L_21849370_SNP [dm6]	C	T	1.887e^-4	0.729	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1857150	3L_1857150_SNP [dm3] 3L_1857150_SNP [dm6]	A	G	1.888e^-4	0.729	UPSTREAM CG12024 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26595100	3R_26595100_SNP [dm3] 3R_30769378_SNP [dm6]	A	G	1.896e^-4	0.729	INTRON zfh1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1857866	3L_1857866_SNP [dm3] 3L_1857866_SNP [dm6]	C	T	1.902e^-4	0.729	SYNONYMOUS_CODING CG12024	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21990412	3R_21990412_SNP [dm3] 3R_26164690_SNP [dm6]	G	C	1.906e^-4	0.729	INTERGENIC
2R	7328313	2R_7328313_SNP [dm3] 2R_11440808_SNP [dm6]	G	A	1.909e^-4	0.729	INTRON CG7777
2L	5869473	2L_5869473_SNP [dm3] 2L_5869473_SNP [dm6]	C	A	1.911e^-4	0.729	INTRON rau
3R	15384897	3R_15384897_DEL [dm3] 3R_19559175_DEL [dm6]	TT	T	1.912e^-4	0.729	INTRON Dys
3L	2645491	3L_2645491_SNP [dm3] 3L_2645491_SNP [dm6]	A	T	1.913e^-4	0.729	INTRON CG1143
3L	18688290	3L_18688290_SNP [dm3] 3L_18695190_SNP [dm6]	C	G	1.919e^-4	0.73	INTRON CG6893
2R	18180957	2R_18180957_SNP [dm3] 2R_22293452_SNP [dm6]	C	T	1.936e^-4	0.733	START_GAINED CG5819 UTR_5_PRIME CG5819 INTRON CG5819
3L	3680402	3L_3680402_SNP [dm3] 3L_3680402_SNP [dm6]	T	C	1.937e^-4	0.733	INTERGENIC
X	9947991	X_9947991_SNP [dm3] X_10053958_SNP [dm6]	G	A	1.943e^-4	0.733	SYNONYMOUS_CODING Yp1 DOWNSTREAM CR45601
X	14678764	X_14678764_SNP [dm3] X_14784731_SNP [dm6]	A	C	1.946e^-4	0.733	UTR_3_PRIME Ag5r UPSTREAM Ag5r2 DOWNSTREAM Ag5r
3R	27136505	3R_27136505_SNP [dm3] 3R_31310783_SNP [dm6]	T	A	1.950e^-4	0.733	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	19995744	X_19995744_SNP [dm3] X_20101711_SNP [dm6]	A	T	1.958e^-4	0.733	INTERGENIC	transposable element FlyBase
2R	16786743	2R_16786743_SNP [dm3] 2R_20899238_SNP [dm6]	T	C	1.959e^-4	0.733	DOWNSTREAM CR43160 INTRON otp	regulatory region REDfly_CRMs
3R	13570405	3R_13570405_SNP [dm3] 3R_17744683_SNP [dm6]	A	C	1.963e^-4	0.733	INTRON TyrRII
3L	4841660	3L_4841660_SNP [dm3] 3L_4841660_SNP [dm6]	A	G	1.968e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	13879663	2L_13879663_SNP [dm3] 2L_13879663_SNP [dm6]	C	A	1.970e^-4	0.733	SYNONYMOUS_CODING CenG1A INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8447278	2L_8447278_SNP [dm3] 2L_8447278_SNP [dm6]	T	G	1.976e^-4	0.733	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	1239576	2L_1239576_SNP [dm3] 2L_1239576_SNP [dm6]	A	T	1.979e^-4	0.733	UPSTREAM CG5397 INTERGENIC
2R	17122056	2R_17122056_SNP [dm3] 2R_21234551_SNP [dm6]	C	T	1.986e^-4	0.733	INTRON ASPP
X	18259014	X_18259014_SNP [dm3] X_18364981_SNP [dm6]	A	G	1.990e^-4	0.733	INTERGENIC
3R	26678186	3R_26678186_SNP [dm3] 3R_30852464_SNP [dm6]	C	T	1.993e^-4	0.733	UTR_5_PRIME tll	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	13092570	2R_13092570_SNP [dm3] 2R_17205065_SNP [dm6]	C	T	1.994e^-4	0.733	UPSTREAM CG43237 INTERGENIC
3L	11279045	3L_11279045_INS [dm3] 3L_11285945_INS [dm6]	T	TACAT	2.000e^-4	0.733	DOWNSTREAM CR45404 INTERGENIC
3L	4556696	3L_4556696_SNP [dm3] 3L_4556696_SNP [dm6]	T	A	2.004e^-4	0.733	UPSTREAM CG42540 INTRON CG42540
3L	1858016	3L_1858016_SNP [dm3] 3L_1858016_SNP [dm6]	A	G	2.004e^-4	0.733	SYNONYMOUS_CODING CG12024	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17790757	2L_17790757_SNP [dm3] 2L_17790757_SNP [dm6]	G	A	2.007e^-4	0.733	INTRON CadN2
2R	12476425	2R_12476425_SNP [dm3] 2R_16588920_SNP [dm6]	G	A	2.010e^-4	0.733	SYNONYMOUS_CODING CG8311 DOWNSTREAM CG8306	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21378597	3R_21378597_SNP [dm3] 3R_25552875_SNP [dm6]	G	T	2.020e^-4	0.733	INTRON msi	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	22135300	3R_22135300_SNP [dm3] 3R_26309578_SNP [dm6]	G	C	2.046e^-4	0.733	INTERGENIC
X	20321162	X_20321162_SNP [dm3] X_20450135_SNP [dm6]	C	A	2.048e^-4	0.733	INTRON CG32506
X	8402577	X_8402577_SNP [dm3] X_8508544_SNP [dm6]	G	A	2.052e^-4	0.733	INTRON CG33181
2L	9053262	2L_9053262_SNP [dm3] 2L_9053262_SNP [dm6]	T	A	2.052e^-4	0.733	INTRON CG31708
3L	13187327	3L_13187327_SNP [dm3] 3L_13194227_SNP [dm6]	T	A	2.056e^-4	0.733	INTERGENIC
3L	8419005	3L_8419005_SNP [dm3] 3L_8425905_SNP [dm6]	G	A	2.057e^-4	0.733	INTRON Cbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	9636519	3L_9636519_SNP [dm3] 3L_9643419_SNP [dm6]	A	T	2.063e^-4	0.733	UPSTREAM CG33696 INTRON fry
X	19996124	X_19996124_SNP [dm3] X_20102091_SNP [dm6]	A	T	2.064e^-4	0.733	INTERGENIC	transposable element FlyBase
2L	14702724	2L_14702724_SNP [dm3] 2L_14702724_SNP [dm6]	C	G	2.067e^-4	0.733	INTERGENIC
2L	9631278	2L_9631278_SNP [dm3] 2L_9631278_SNP [dm6]	C	T	2.076e^-4	0.733	INTERGENIC
3L	5703079	3L_5703079_SNP [dm3] 3L_5709979_SNP [dm6]	C	A	2.079e^-4	0.733	INTRON sif
2L	3877918	2L_3877918_SNP [dm3] 2L_3877918_SNP [dm6]	C	T	2.080e^-4	0.733	INTRON capu
3R	4596948	3R_4596948_SNP [dm3] 3R_8771226_SNP [dm6]	C	A	2.082e^-4	0.733	DOWNSTREAM CG13318 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	1755902	3L_1755902_SNP [dm3] 3L_1755902_SNP [dm6]	C	G	2.090e^-4	0.733	UTR_5_PRIME Cht2 UPSTREAM CG8001 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
X	6477081	X_6477081_SNP [dm3] X_6583048_SNP [dm6]	G	T	2.092e^-4	0.733	SYNONYMOUS_CODING CG34417 INTRON CG34417
X	2994978	X_2994978_SNP [dm3] X_3100945_SNP [dm6]	A	C	2.096e^-4	0.733	INTRON kirre
3L	18733295	3L_18733295_SNP [dm3] 3L_18740195_SNP [dm6]	A	G	2.099e^-4	0.733	INTERGENIC
2R	4950454	2R_4950454_SNP [dm3] 2R_9062949_SNP [dm6]	G	A	2.103e^-4	0.733	INTRON ana	regulatory region REDfly_CRMs
3R	15644658	3R_15644658_DEL [dm3] 3R_19818936_DEL [dm6]	CAGTGC	C	2.113e^-4	0.733	INTRON bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15173056	2R_15173056_DEL [dm3] 2R_19285551_DEL [dm6]	AGTCTAACAAAATTAGTA...	A	2.114e^-4	0.733	UTR_3_PRIME CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
X	17654487	X_17654487_DEL [dm3] X_17760454_DEL [dm6]	TT	T	2.115e^-4	0.733	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10331762	3L_10331762_SNP [dm3] 3L_10338662_SNP [dm6]	C	A	2.123e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	4091100	X_4091100_SNP [dm3] X_4197067_SNP [dm6]	G	C	2.133e^-4	0.733	INTRON Fas2
2R	9420876	2R_9420876_SNP [dm3] 2R_13533371_SNP [dm6]	C	T	2.142e^-4	0.733	UPSTREAM Vmat INTRON Vmat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	20227673	X_20227673_SNP [dm3] X_20356646_SNP [dm6]	G	C	2.142e^-4	0.733	INTERGENIC
2L	10082295	2L_10082295_SNP [dm3] 2L_10082295_SNP [dm6]	C	T	2.145e^-4	0.733	INTRON CG44153	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11415517	3L_11415517_SNP [dm3] 3L_11422417_SNP [dm6]	A	T	2.146e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18475324	2R_18475324_DEL [dm3] 2R_22587819_DEL [dm6]	GA	G	2.157e^-4	0.733	INTRON dnr1
2L	10924781	2L_10924781_SNP [dm3] 2L_10924781_SNP [dm6]	G	T	2.164e^-4	0.733	INTRON dpr2
3R	27125747	3R_27125747_SNP [dm3] 3R_31300025_SNP [dm6]	C	T	2.165e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13310290	3L_13310290_SNP [dm3] 3L_13317190_SNP [dm6]	T	G	2.165e^-4	0.733	INTERGENIC
3R	24829753	3R_24829753_SNP [dm3] 3R_29004031_SNP [dm6]	A	T	2.165e^-4	0.733	INTRON wat
X	5534162	X_5534162_SNP [dm3] X_5640129_SNP [dm6]	C	A	2.168e^-4	0.733	INTRON CG42492
3R	4349607	3R_4349607_SNP [dm3] 3R_8523885_SNP [dm6]	G	A	2.189e^-4	0.733	UPSTREAM CG31259 DOWNSTREAM CG31454 INTERGENIC
3R	26725157	3R_26725157_SNP [dm3] 3R_30899435_SNP [dm6]	G	C	2.190e^-4	0.733	INTRON Cyp4c3
2R	9147026	2R_9147026_SNP [dm3] 2R_13259521_SNP [dm6]	T	A	2.197e^-4	0.733	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3R	24397623	3R_24397623_SNP [dm3] 3R_28571901_SNP [dm6]	T	C	2.198e^-4	0.733	INTERGENIC	regulatory region REDfly_CRMs
3R	26615052	3R_26615052_SNP [dm3] 3R_30789330_SNP [dm6]	A	G	2.205e^-4	0.733	DOWNSTREAM wts & 1 other INTERGENIC
3R	13922099	3R_13922099_SNP [dm3] 3R_18096377_SNP [dm6]	G	C	2.208e^-4	0.733	SYNONYMOUS_CODING sr
X	18264650	X_18264650_SNP [dm3] X_18370617_SNP [dm6]	A	T	2.212e^-4	0.733	UPSTREAM CrebB & 1 other INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	13307747	3L_13307747_SNP [dm3] 3L_13314647_SNP [dm6]	G	T	2.213e^-4	0.733	INTERGENIC
2R	14678339	2R_14678339_SNP [dm3] 2R_18790834_SNP [dm6]	C	T	2.213e^-4	0.733	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6377612	X_6377612_SNP [dm3] X_6483579_SNP [dm6]	A	G	2.225e^-4	0.733	INTRON CG42340
X	6592881	X_6592881_SNP [dm3] X_6698848_SNP [dm6]	A	T	2.226e^-4	0.733	UPSTREAM CG14440 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	17647021	2R_17647021_SNP [dm3] 2R_21759516_SNP [dm6]	G	A	2.227e^-4	0.733	INTERGENIC
3R	27129490	3R_27129490_SNP [dm3] 3R_31303768_SNP [dm6]	A	G	2.235e^-4	0.733	SYNONYMOUS_CODING CG11340	TF binding site mE1_TFBS_sens
3L	5703080	3L_5703080_SNP [dm3] 3L_5709980_SNP [dm6]	C	G	2.238e^-4	0.733	INTRON sif
2L	20689867	2L_20689867_SNP [dm3] 2L_20689867_SNP [dm6]	A	C	2.239e^-4	0.733	INTRON Hr38	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3L	16775492	3L_16775492_SNP [dm3] 3L_16782392_SNP [dm6]	C	T	2.243e^-4	0.733	UTR_3_PRIME CG9705 UPSTREAM CG9706	TF binding site BDTNP1_TFBS_dl
3R	10305787	3R_10305787_SNP [dm3] 3R_14480065_SNP [dm6]	G	A	2.247e^-4	0.733	INTRON cv-c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25593365	3R_25593365_SNP [dm3] 3R_29767643_SNP [dm6]	C	A	2.251e^-4	0.733	INTRON kay	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	25617852	3R_25617852_SNP [dm3] 3R_29792130_SNP [dm6]	G	C	2.256e^-4	0.733	NON_SYNONYMOUS_CODING kay	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13339531	3L_13339531_SNP [dm3] 3L_13346431_SNP [dm6]	G	T	2.259e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3997257	2L_3997257_INS [dm3] 2L_3997257_INS [dm6]	T	TGA	2.261e^-4	0.733	INTERGENIC
3L	2645866	3L_2645866_SNP [dm3] 3L_2645866_SNP [dm6]	A	G	2.262e^-4	0.733	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15757470	3L_15757470_SNP [dm3] 3L_15764370_SNP [dm6]	G	A	2.267e^-4	0.733	INTERGENIC
2R	13415561	2R_13415561_SNP [dm3] 2R_17528056_SNP [dm6]	A	G	2.273e^-4	0.733	SYNONYMOUS_CODING Patronin
3R	27137550	3R_27137550_SNP [dm3] 3R_31311828_SNP [dm6]	C	T	2.279e^-4	0.733	UTR_5_PRIME CG34347	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	20434591	X_20434591_SNP [dm3] X_20563564_SNP [dm6]	A	G	2.282e^-4	0.733	INTRON RunxB
3L	18202542	3L_18202542_SNP [dm3] 3L_18209442_SNP [dm6]	A	T	2.284e^-4	0.733	INTERGENIC
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	2.285e^-4	0.733	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
2R	12278778	2R_12278778_SNP [dm3] 2R_16391273_SNP [dm6]	G	A	2.288e^-4	0.733	INTRON Sema-2b	TF binding site mE1_TFBS_chinmo
2R	11792093	2R_11792093_SNP [dm3] 2R_15904588_SNP [dm6]	A	C	2.289e^-4	0.733	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8156863	X_8156863_SNP [dm3] X_8262830_SNP [dm6]	T	C	2.299e^-4	0.733	INTRON CG1632	TF binding site BDTNP1_TFBS_da
X	18261995	X_18261995_SNP [dm3] X_18367962_SNP [dm6]	C	T	2.300e^-4	0.733	INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	13772991	2R_13772991_SNP [dm3] 2R_17885486_SNP [dm6]	C	T	2.305e^-4	0.733	INTRON Elk
2L	15349628	2L_15349628_SNP [dm3] 2L_15349628_SNP [dm6]	G	T	2.310e^-4	0.733	INTERGENIC
2R	3692346	2R_3692346_SNP [dm3] 2R_7804841_SNP [dm6]	G	A	2.311e^-4	0.733	START_GAINED Nop17l UTR_5_PRIME Nop17l	TF binding site mE1_TFBS_cad
2R	15733645	2R_15733645_SNP [dm3] 2R_19846140_SNP [dm6]	C	G	2.319e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	18113039	3L_18113039_SNP [dm3] 3L_18119939_SNP [dm6]	C	A	2.325e^-4	0.733	SYNONYMOUS_CODING CG7341 DOWNSTREAM CG32195 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	19426901	2L_19426901_SNP [dm3] 2L_19426901_SNP [dm6]	A	C	2.327e^-4	0.733	UPSTREAM CG16771 & 1 other INTRON CG16771 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	13934392	X_13934392_SNP [dm3] X_14040359_SNP [dm6]	G	C	2.332e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19598099	2L_19598099_SNP [dm3] 2L_19598099_SNP [dm6]	G	A	2.340e^-4	0.733	INTRON Lar
3L	837693	3L_837693_SNP [dm3] 3L_837693_SNP [dm6]	A	C	2.344e^-4	0.733	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3R	24688123	3R_24688123_SNP [dm3] 3R_28862401_SNP [dm6]	C	T	2.344e^-4	0.733	INTRON spg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	2862370	3L_2862370_SNP [dm3] 3L_2862370_SNP [dm6]	G	T	2.344e^-4	0.733	INTRON CG43444
3L	3998029	3L_3998029_SNP [dm3] 3L_3998029_SNP [dm6]	A	T	2.363e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	4026366	3L_4026366_DEL [dm3] 3L_4026366_DEL [dm6]	ACTA	A	2.369e^-4	0.733	UPSTREAM Gr64a & 1 other INTERGENIC
2R	20945852	2R_20945852_SNP [dm3] 2R_25058329_SNP [dm6]	G	C	2.370e^-4	0.733	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_prd
3L	14057292	3L_14057292_SNP [dm3] 3L_14064192_SNP [dm6]	C	T	2.372e^-4	0.733	INTRON CG32138	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	17802720	2L_17802720_INS [dm3] 2L_17802720_INS [dm6]	G	GATAAA	2.381e^-4	0.733	INTRON CadN2
2L	6912172	2L_6912172_SNP [dm3] 2L_6912172_SNP [dm6]	C	G	2.382e^-4	0.733	DOWNSTREAM Rat1 INTRON Wee1
3L	1849377	3L_1849377_SNP [dm3] 3L_1849377_SNP [dm6]	A	G	2.385e^-4	0.733	INTERGENIC
3L	11168196	3L_11168196_SNP [dm3] 3L_11175096_SNP [dm6]	T	G	2.386e^-4	0.733	SYNONYMOUS_CODING CG14142 UTR_3_PRIME CG14142
2R	14340277	2R_14340277_SNP [dm3] 2R_18452772_SNP [dm6]	C	G	2.391e^-4	0.733	UTR_3_PRIME CG17669 DOWNSTREAM CG5190	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7943127	3L_7943127_SNP [dm3] 3L_7950027_SNP [dm6]	C	T	2.395e^-4	0.733	INTRON exex
X	14062871	X_14062871_SNP [dm3] X_14168838_SNP [dm6]	T	G	2.402e^-4	0.733	UPSTREAM CG12480 INTERGENIC
3L	11927532	3L_11927532_SNP [dm3] 3L_11934432_SNP [dm6]	G	T	2.407e^-4	0.733	SYNONYMOUS_CODING byn INTRON CG44837	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13588778	3R_13588778_SNP [dm3] 3R_17763056_SNP [dm6]	C	A	2.411e^-4	0.733	START_GAINED TyrR UTR_5_PRIME TyrR UPSTREAM TyrR
3L	13473681	3L_13473681_SNP [dm3] 3L_13480581_SNP [dm6]	T	A	2.411e^-4	0.733	UTR_5_PRIME stv UPSTREAM stv INTRON stv
3L	1734655	3L_1734655_SNP [dm3] 3L_1734655_SNP [dm6]	G	A	2.412e^-4	0.733	SYNONYMOUS_CODING Oseg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	21465817	X_21465817_DEL [dm3] X_21594790_DEL [dm6]	AATTTA	A	2.422e^-4	0.733	INTERGENIC
3L	3680449	3L_3680449_SNP [dm3] 3L_3680449_SNP [dm6]	G	A	2.423e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_cad
X	7613485	X_7613485_SNP [dm3] X_7719452_SNP [dm6]	G	A	2.428e^-4	0.733	INTERGENIC
3L	6100299	3L_6100299_SNP [dm3] 3L_6107199_SNP [dm6]	C	T	2.429e^-4	0.733	INTRON Ets65A	TF binding site mE1_TFBS_cad
3R	5137887	3R_5137887_SNP [dm3] 3R_9312165_SNP [dm6]	A	G	2.429e^-4	0.733	INTRON CG8861
3L	20811938	3L_20811938_SNP [dm3] 3L_20818838_SNP [dm6]	C	T	2.430e^-4	0.733	UPSTREAM Pka-R1 & 1 other INTRON Pka-R1
2R	7438732	2R_7438732_SNP [dm3] 2R_11551227_SNP [dm6]	G	A	2.433e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_HSA
X	16847578	X_16847578_SNP [dm3] X_16953545_SNP [dm6]	T	C	2.436e^-4	0.733	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6373944	3L_6373944_SNP [dm3] 3L_6380844_SNP [dm6]	A	C	2.437e^-4	0.733	INTERGENIC
3L	7071924	3L_7071924_SNP [dm3] 3L_7078824_SNP [dm6]	G	T	2.440e^-4	0.733	INTERGENIC
3R	26618541	3R_26618541_SNP [dm3] 3R_30792819_SNP [dm6]	A	G	2.446e^-4	0.733	SYNONYMOUS_CODING wts	TF binding site mE1_TFBS_chinmo
2R	15459606	2R_15459606_SNP [dm3] 2R_19572101_SNP [dm6]	T	G	2.447e^-4	0.733	INTRON sm
X	14062712	X_14062712_SNP [dm3] X_14168679_SNP [dm6]	G	T	2.453e^-4	0.733	UPSTREAM CG12480 INTERGENIC
X	12358215	X_12358215_SNP [dm3] X_12464182_SNP [dm6]	T	C	2.453e^-4	0.733	SYNONYMOUS_CODING CG42258	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
2R	7680554	2R_7680554_DEL [dm3] 2R_11793049_DEL [dm6]	TGTAT	T	2.463e^-4	0.733	INTRON ths	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_prd
2L	5966647	2L_5966647_SNP [dm3] 2L_5966647_SNP [dm6]	G	A	2.464e^-4	0.733	SYNONYMOUS_CODING CG13992	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25025221	3R_25025221_SNP [dm3] 3R_29199499_SNP [dm6]	C	T	2.470e^-4	0.733	UPSTREAM CG11899 DOWNSTREAM CG14515 INTERGENIC
2R	19008611	2R_19008611_SNP [dm3] 2R_23121088_SNP [dm6]	G	A	2.472e^-4	0.733	INTERGENIC
X	10413834	X_10413834_SNP [dm3] X_10519801_SNP [dm6]	A	G	2.479e^-4	0.733	INTRON spri
3L	7733469	3L_7733469_SNP [dm3] 3L_7740369_SNP [dm6]	G	A	2.486e^-4	0.733	INTRON CG32373 & 1 other
2L	10924785	2L_10924785_SNP [dm3] 2L_10924785_SNP [dm6]	G	C	2.491e^-4	0.733	INTRON dpr2
3R	14886379	3R_14886379_DEL [dm3] 3R_19060657_DEL [dm6]	GGCTGGACCACAAACTTC...	G	2.503e^-4	0.733	INTRON cdi
X	8156894	X_8156894_INS [dm3] X_8262861_INS [dm6]	T	TTCCACGCTCCGAACCAAAT...	2.520e^-4	0.733	INTRON CG1632	TF binding site BDTNP1_TFBS_da
2L	19898493	2L_19898493_SNP [dm3] 2L_19898493_SNP [dm6]	A	T	2.525e^-4	0.733	INTRON sick
3L	13187260	3L_13187260_SNP [dm3] 3L_13194160_SNP [dm6]	T	G	2.537e^-4	0.733	INTERGENIC
X	16823982	X_16823982_SNP [dm3] X_16929949_SNP [dm6]	A	T	2.537e^-4	0.733	INTRON CG4928
3L	3874445	3L_3874445_SNP [dm3] 3L_3874445_SNP [dm6]	T	G	2.541e^-4	0.733	INTERGENIC
2L	16504341	2L_16504341_SNP [dm3] 2L_16504341_SNP [dm6]	A	G	2.545e^-4	0.733	INTRON Tpr2
X	12438069	X_12438069_SNP [dm3] X_12544036_SNP [dm6]	T	A	2.546e^-4	0.733	INTRON CG43921
X	3819254	X_3819254_SNP [dm3] X_3925221_SNP [dm6]	A	G	2.546e^-4	0.733	INTRON CG42541
2L	19570770	2L_19570770_SNP [dm3] 2L_19570770_SNP [dm6]	T	A	2.550e^-4	0.733	UPSTREAM mir-2a-1 & 1 other INTRON spi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	15641767	2L_15641767_SNP [dm3] 2L_15641767_SNP [dm6]	T	C	2.551e^-4	0.733	INTERGENIC
3R	26658393	3R_26658393_DEL [dm3] 3R_30832671_DEL [dm6]	AATATCTATAGA...	G	2.560e^-4	0.733	INTRON CG15544
X	14804057	X_14804057_SNP [dm3] X_14910024_SNP [dm6]	T	A	2.567e^-4	0.733	UTR_3_PRIME CG14406 UPSTREAM CG9509 DOWNSTREAM CG14406 INTRON Flo2	regulatory region REDfly_CRMs
2L	16840396	2L_16840396_SNP [dm3] 2L_16840396_SNP [dm6]	T	C	2.573e^-4	0.733	UTR_3_PRIME SclA & 1 other INTRON SclA
3L	1568524	3L_1568524_SNP [dm3] 3L_1568524_SNP [dm6]	A	C	2.577e^-4	0.733	UTR_5_PRIME CG7879 UPSTREAM CG12004 DOWNSTREAM CG12003	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	13446531	2L_13446531_SNP [dm3] 2L_13446531_SNP [dm6]	A	T	2.586e^-4	0.733	UTR_5_PRIME CG42784 UPSTREAM CG9267
2R	12282055	2R_12282055_SNP [dm3] 2R_16394550_SNP [dm6]	G	A	2.587e^-4	0.733	INTRON Sema-2b
3L	16491239	3L_16491239_SNP [dm3] 3L_16498139_SNP [dm6]	T	C	2.588e^-4	0.733	INTRON CG43373 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19425467	2L_19425467_SNP [dm3] 2L_19425467_SNP [dm6]	T	A	2.593e^-4	0.733	UPSTREAM CG13085 & 1 other INTRON Pax & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7438706	2R_7438706_SNP [dm3] 2R_11551201_SNP [dm6]	T	A	2.606e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	7894419	3L_7894419_SNP [dm3] 3L_7901319_SNP [dm6]	T	C	2.607e^-4	0.733	SYNONYMOUS_CODING pbl INTRON pbl
3L	13191807	3L_13191807_SNP [dm3] 3L_13198707_SNP [dm6]	G	C	2.611e^-4	0.733	INTERGENIC
3R	3152269	3R_3152269_DEL [dm3] 3R_7326547_DEL [dm6]	GTGGA	G	2.612e^-4	0.733	DOWNSTREAM CG44335 EXON CR44336	TF binding site mE1_TFBS_cad
3L	20632164	3L_20632164_SNP [dm3] 3L_20639064_SNP [dm6]	A	G	2.615e^-4	0.733	SYNONYMOUS_CODING CG13251	TF binding site mE1_TFBS_chinmo
3L	10793255	3L_10793255_SNP [dm3] 3L_10800155_SNP [dm6]	A	C	2.617e^-4	0.733	INTERGENIC
2R	12038613	2R_12038613_SNP [dm3] 2R_16151108_SNP [dm6]	T	A	2.621e^-4	0.733	INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	10221175	2L_10221175_SNP [dm3] 2L_10221175_SNP [dm6]	T	C	2.625e^-4	0.733	UTR_5_PRIME Npc1a UPSTREAM Prosalpha6 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	6103275	3L_6103275_SNP [dm3] 3L_6110175_SNP [dm6]	G	C	2.634e^-4	0.733	INTRON Ets65A	TF binding site mE1_TFBS_cad
2L	10068879	2L_10068879_SNP [dm3] 2L_10068879_SNP [dm6]	G	C	2.636e^-4	0.733	NON_SYNONYMOUS_CODING CG44153	TF binding site BDTNP1_TFBS_sna
3L	19318930	3L_19318930_SNP [dm3] 3L_19325830_SNP [dm6]	T	C	2.637e^-4	0.733	INTRON pip
3R	13939846	3R_13939846_SNP [dm3] 3R_18114124_SNP [dm6]	T	G	2.641e^-4	0.733	INTRON sr
2L	5774406	2L_5774406_SNP [dm3] 2L_5774406_SNP [dm6]	G	T	2.648e^-4	0.733	UPSTREAM CG9171 INTRON CG9171	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19995800	X_19995800_SNP [dm3] X_20101767_SNP [dm6]	G	C	2.652e^-4	0.733	INTERGENIC	transposable element FlyBase
3L	15693061	3L_15693061_SNP [dm3] 3L_15699961_SNP [dm6]	C	T	2.655e^-4	0.733	UPSTREAM comm2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14181533	2R_14181533_SNP [dm3] 2R_18294028_SNP [dm6]	A	T	2.657e^-4	0.733	NON_SYNONYMOUS_CODING CG14502 UPSTREAM CG18536 INTRON sbb	TF binding site mE1_TFBS_HSA
2L	8697814	2L_8697814_SNP [dm3] 2L_8697814_SNP [dm6]	A	C	2.664e^-4	0.733	INTRON Hnf4
3L	5944380	3L_5944380_SNP [dm3] 3L_5951280_SNP [dm6]	T	C	2.665e^-4	0.733	UPSTREAM CG33993 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19537420	2R_19537420_SNP [dm3] 2R_23649897_SNP [dm6]	A	T	2.667e^-4	0.733	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9439242	2R_9439242_SNP [dm3] 2R_13551737_SNP [dm6]	A	T	2.675e^-4	0.733	UPSTREAM CG33156 INTRON CG33156
3R	18780272	3R_18780272_SNP [dm3] 3R_22954550_SNP [dm6]	A	G	2.676e^-4	0.733	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	8390085	3R_8390085_SNP [dm3] 3R_12564363_SNP [dm6]	C	T	2.676e^-4	0.733	INTRON Octbeta2R	TF binding site mE1_TFBS_HSA mE1_TFBS_run
X	9843864	X_9843864_SNP [dm3] X_9949831_SNP [dm6]	G	A	2.683e^-4	0.733	INTERGENIC
2R	7438730	2R_7438730_SNP [dm3] 2R_11551225_SNP [dm6]	T	A	2.683e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	7438735	2R_7438735_SNP [dm3] 2R_11551230_SNP [dm6]	C	A	2.683e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	4349394	3R_4349394_SNP [dm3] 3R_8523672_SNP [dm6]	G	A	2.685e^-4	0.733	UPSTREAM CG31259 DOWNSTREAM CG31454 INTERGENIC
X	2926488	X_2926488_SNP [dm3] X_3032455_SNP [dm6]	A	C	2.687e^-4	0.733	INTRON kirre
X	9489472	X_9489472_SNP [dm3] X_9595439_SNP [dm6]	A	G	2.692e^-4	0.733	EXON CR45543
3L	15625591	3L_15625591_INS [dm3] 3L_15632491_INS [dm6]	T	TT	2.700e^-4	0.733	UTR_5_PRIME comm3 INTRON comm3
3L	11599845	3L_11599845_SNP [dm3] 3L_11606745_SNP [dm6]	T	C	2.703e^-4	0.733	SYNONYMOUS_CODING CG6091
2R	7434800	2R_7434800_SNP [dm3] 2R_11547295_SNP [dm6]	T	A	2.724e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	7434751	2R_7434751_SNP [dm3] 2R_11547246_SNP [dm6]	C	G	2.726e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	20515697	2R_20515697_SNP [dm3] 2R_24628174_SNP [dm6]	T	C	2.728e^-4	0.733	DOWNSTREAM snoRNA:Me18S-G393 INTRON CG13594
3L	11276731	3L_11276731_SNP [dm3] 3L_11283631_SNP [dm6]	A	G	2.734e^-4	0.733	INTERGENIC
3L	21542444	3L_21542444_SNP [dm3] 3L_21549344_SNP [dm6]	G	A	2.736e^-4	0.733	SYNONYMOUS_CODING Wnk	TF binding site mE1_TFBS_chinmo
2L	7041785	2L_7041785_DEL [dm3] 2L_7041785_DEL [dm6]	GTCG	A	2.740e^-4	0.733	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16491236	3L_16491236_SNP [dm3] 3L_16498136_SNP [dm6]	T	A	2.744e^-4	0.733	INTRON CG43373 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9722004	3L_9722004_SNP [dm3] 3L_9728904_SNP [dm6]	A	C	2.749e^-4	0.733	UTR_3_PRIME Naa60 DOWNSTREAM Naa60
X	12937100	X_12937100_SNP [dm3] X_13043067_SNP [dm6]	G	A	2.750e^-4	0.733	INTRON rad
3R	15083738	3R_15083738_SNP [dm3] 3R_19258016_SNP [dm6]	G	A	2.759e^-4	0.733	NON_SYNONYMOUS_CODING CG14280	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2460748	2L_2460748_SNP [dm3] 2L_2460748_SNP [dm6]	G	C	2.760e^-4	0.733	UPSTREAM tRNA:Y1:22Fb DOWNSTREAM dpp INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	12146817	3L_12146817_SNP [dm3] 3L_12153717_SNP [dm6]	A	C	2.760e^-4	0.733	SYNONYMOUS_CODING Nrx-IV
3R	22141543	3R_22141543_SNP [dm3] 3R_26315821_SNP [dm6]	T	A	2.761e^-4	0.733	INTERGENIC
2L	10216584	2L_10216584_SNP [dm3] 2L_10216584_SNP [dm6]	C	T	2.764e^-4	0.733	NON_SYNONYMOUS_CODING Npc1a	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	15583707	2R_15583707_SNP [dm3] 2R_19696202_SNP [dm6]	G	A	2.769e^-4	0.733	EXON CR44506	regulatory region REDfly_CRMs
X	10895007	X_10895007_SNP [dm3] X_11000974_SNP [dm6]	A	G	2.772e^-4	0.733	INTRON CG42339
2R	17123749	2R_17123749_SNP [dm3] 2R_21236244_SNP [dm6]	G	A	2.808e^-4	0.733	INTRON ASPP	TF binding site mE1_TFBS_cad
2L	2464326	2L_2464326_SNP [dm3] 2L_2464326_SNP [dm6]	C	T	2.811e^-4	0.733	INTERGENIC	enhancer FlyBase TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	7002230	2L_7002230_SNP [dm3] 2L_7002230_SNP [dm6]	C	A	2.811e^-4	0.733	INTRON uif
2L	19577867	2L_19577867_SNP [dm3] 2L_19577867_SNP [dm6]	C	A	2.814e^-4	0.733	NON_SYNONYMOUS_CODING msb1l UPSTREAM spi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2L	17793294	2L_17793294_SNP [dm3] 2L_17793294_SNP [dm6]	G	T	2.815e^-4	0.733	INTRON CadN2 EXON CR43419	TF binding site mE1_TFBS_cad
2R	13763940	2R_13763940_SNP [dm3] 2R_17876435_SNP [dm6]	G	A	2.824e^-4	0.733	INTRON Elk
2R	7438755	2R_7438755_SNP [dm3] 2R_11551250_SNP [dm6]	T	A	2.825e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_HSA
X	4094154	X_4094154_SNP [dm3] X_4200121_SNP [dm6]	C	T	2.828e^-4	0.733	INTRON Fas2	TF binding site BDTNP1_TFBS_dl
2L	17287684	2L_17287684_SNP [dm3] 2L_17287684_SNP [dm6]	C	T	2.829e^-4	0.733	DOWNSTREAM CG15140 INTERGENIC
X	13934374	X_13934374_SNP [dm3] X_14040341_SNP [dm6]	C	T	2.830e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13183392	3L_13183392_SNP [dm3] 3L_13190292_SNP [dm6]	A	T	2.836e^-4	0.733	INTERGENIC
X	19111229	X_19111229_SNP [dm3] X_19217196_SNP [dm6]	G	A	2.837e^-4	0.733	DOWNSTREAM Muc18B INTERGENIC
3L	16754236	3L_16754236_SNP [dm3] 3L_16761136_SNP [dm6]	G	A	2.844e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
X	16708811	X_16708811_SNP [dm3] X_16814778_SNP [dm6]	C	T	2.849e^-4	0.733	DOWNSTREAM CR44129 INTRON CG4829	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5703244	3L_5703244_SNP [dm3] 3L_5710144_SNP [dm6]	A	G	2.854e^-4	0.733	INTRON sif
2R	13486755	2R_13486755_SNP [dm3] 2R_17599250_SNP [dm6]	C	T	2.855e^-4	0.733	UTR_5_PRIME CG43920 DOWNSTREAM CG42649 INTRON lack
3L	1564489	3L_1564489_SNP [dm3] 3L_1564489_SNP [dm6]	A	G	2.856e^-4	0.733	UPSTREAM CG12003 INTRON CG7879
3R	25894705	3R_25894705_SNP [dm3] 3R_30068983_SNP [dm6]	C	G	2.857e^-4	0.733	INTRON sima
2R	10722485	2R_10722485_DEL [dm3] 2R_14834980_DEL [dm6]	AA	A	2.861e^-4	0.733	INTERGENIC
3R	24421845	3R_24421845_SNP [dm3] 3R_28596123_SNP [dm6]	T	G	2.862e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1733100	3L_1733100_SNP [dm3] 3L_1733100_SNP [dm6]	G	A	2.871e^-4	0.733	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10576213	3R_10576213_SNP [dm3] 3R_14750491_SNP [dm6]	T	C	2.876e^-4	0.733	INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z
3L	12290600	3L_12290600_SNP [dm3] 3L_12297500_SNP [dm6]	T	A	2.876e^-4	0.733	INTERGENIC
2R	14671796	2R_14671796_SNP [dm3] 2R_18784291_SNP [dm6]	G	A	2.879e^-4	0.733	INTRON CG15080	enhancer mE1_CBP_Enhancers
2L	15960006	2L_15960006_SNP [dm3] 2L_15960006_SNP [dm6]	T	C	2.883e^-4	0.733	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
X	14062684	X_14062684_SNP [dm3] X_14168651_SNP [dm6]	A	G	2.886e^-4	0.733	UPSTREAM CG12480 INTERGENIC
3L	14815464	3L_14815464_SNP [dm3] 3L_14822364_SNP [dm6]	C	T	2.891e^-4	0.733	INTRON CG17839
X	12355999	X_12355999_SNP [dm3] X_12461966_SNP [dm6]	G	T	2.894e^-4	0.733	INTRON Rab40
3R	26725095	3R_26725095_SNP [dm3] 3R_30899373_SNP [dm6]	A	G	2.896e^-4	0.733	INTRON Cyp4c3
3R	4342921	3R_4342921_SNP [dm3] 3R_8517199_SNP [dm6]	C	T	2.901e^-4	0.733	UPSTREAM CG11737 INTERGENIC
2R	14086277	2R_14086277_SNP [dm3] 2R_18198772_SNP [dm6]	G	A	2.907e^-4	0.733	INTERGENIC
X	18264761	X_18264761_SNP [dm3] X_18370728_SNP [dm6]	A	T	2.907e^-4	0.733	UPSTREAM CrebB & 1 other INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	2646481	3L_2646481_SNP [dm3] 3L_2646481_SNP [dm6]	T	C	2.909e^-4	0.733	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad
X	12354492	X_12354492_SNP [dm3] X_12460459_SNP [dm6]	G	C	2.910e^-4	0.733	SYNONYMOUS_CODING Rab40
3R	26641281	3R_26641281_SNP [dm3] 3R_30815559_SNP [dm6]	T	C	2.911e^-4	0.733	INTRON cindr
3L	11404306	3L_11404306_SNP [dm3] 3L_11411206_SNP [dm6]	T	C	2.913e^-4	0.733	INTERGENIC
3L	13184451	3L_13184451_SNP [dm3] 3L_13191351_SNP [dm6]	A	G	2.915e^-4	0.733	INTERGENIC
3L	12290803	3L_12290803_SNP [dm3] 3L_12297703_SNP [dm6]	T	G	2.920e^-4	0.733	INTERGENIC
2R	12447776	2R_12447776_SNP [dm3] 2R_16560271_SNP [dm6]	G	A	2.924e^-4	0.733	SYNONYMOUS_CODING DAT
2R	18475339	2R_18475339_SNP [dm3] 2R_22587834_SNP [dm6]	A	C	2.925e^-4	0.733	INTRON dnr1
2R	18475340	2R_18475340_SNP [dm3] 2R_22587835_SNP [dm6]	G	A	2.925e^-4	0.733	INTRON dnr1
3R	21584311	3R_21584311_SNP [dm3] 3R_25758589_SNP [dm6]	T	A	2.936e^-4	0.733	INTRON LpR1
X	20315526	X_20315526_SNP [dm3] X_20444499_SNP [dm6]	C	A	2.939e^-4	0.733	UTR_3_PRIME CG1695	TF binding site BDTNP1_TFBS_dl
X	20727078	X_20727078_SNP [dm3] X_20856051_SNP [dm6]	A	C	2.944e^-4	0.733	INTRON shakB
2L	7365708	2L_7365708_SNP [dm3] 2L_7365708_SNP [dm6]	C	T	2.948e^-4	0.733	INTRON Wnt10
2L	10482563	2L_10482563_SNP [dm3] 2L_10482563_SNP [dm6]	C	A	2.950e^-4	0.733	NON_SYNONYMOUS_CODING RluA-2 UTR_3_PRIME RluA-2 UPSTREAM Grip75	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	1239603	2L_1239603_SNP [dm3] 2L_1239603_SNP [dm6]	A	G	2.956e^-4	0.733	UPSTREAM CG5397 INTERGENIC
2R	16998554	2R_16998554_SNP [dm3] 2R_21111049_SNP [dm6]	A	T	2.959e^-4	0.733	INTRON ktub
3L	14291725	3L_14291725_SNP [dm3] 3L_14298625_SNP [dm6]	T	C	2.959e^-4	0.733	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4092900	2R_4092900_SNP [dm3] 2R_8205395_SNP [dm6]	G	C	2.961e^-4	0.733	NON_SYNONYMOUS_CODING CG14756 INTRON LRP1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20937837	2R_20937837_DEL [dm3] 2R_25050314_DEL [dm6]	ATA	A	2.961e^-4	0.733	INTRON gsb-n	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11727403	X_11727403_SNP [dm3] X_11833370_SNP [dm6]	A	T	2.967e^-4	0.733	UTR_3_PRIME rudhira INTRON rudhira
2L	5561008	2L_5561008_SNP [dm3] 2L_5561008_SNP [dm6]	A	G	2.969e^-4	0.733	SYNONYMOUS_CODING GluRIIB
X	11409403	X_11409403_SNP [dm3] X_11515370_SNP [dm6]	A	T	2.971e^-4	0.733	INTRON Drak	TF binding site mE1_TFBS_Kr
2L	4624701	2L_4624701_SNP [dm3] 2L_4624701_SNP [dm6]	C	T	2.972e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	18213780	X_18213780_SNP [dm3] X_18319747_SNP [dm6]	C	T	2.974e^-4	0.733	INTRON CG6023	transposable element FlyBase
X	20321166	X_20321166_SNP [dm3] X_20450139_SNP [dm6]	A	G	2.977e^-4	0.733	INTRON CG32506
3L	13187251	3L_13187251_SNP [dm3] 3L_13194151_SNP [dm6]	A	C	2.989e^-4	0.733	INTERGENIC
3L	13187262	3L_13187262_SNP [dm3] 3L_13194162_SNP [dm6]	A	G	2.989e^-4	0.733	INTERGENIC
3R	15325833	3R_15325833_INS [dm3] 3R_19500111_INS [dm6]	A	GTACGG	2.996e^-4	0.733	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14394594	2R_14394594_SNP [dm3] 2R_18507089_SNP [dm6]	G	T	2.998e^-4	0.733	INTERGENIC
3R	23651845	3R_23651845_SNP [dm3] 3R_27826123_SNP [dm6]	A	G	3.004e^-4	0.733	INTRON CG34353	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	8264833	X_8264833_SNP [dm3] X_8370800_SNP [dm6]	G	A	3.005e^-4	0.733	INTERGENIC
3L	1170887	3L_1170887_SNP [dm3] 3L_1170887_SNP [dm6]	A	G	3.007e^-4	0.733	INTRON bab2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2R	15315018	2R_15315018_SNP [dm3] 2R_19427513_SNP [dm6]	T	G	3.010e^-4	0.733	SYNONYMOUS_CODING CalpA
X	13478806	X_13478806_SNP [dm3] X_13584773_SNP [dm6]	T	A	3.013e^-4	0.733	INTRON Tango13
2L	12723376	2L_12723376_SNP [dm3] 2L_12723376_SNP [dm6]	T	C	3.013e^-4	0.733	NON_SYNONYMOUS_CODING MRP	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_sens
X	12359677	X_12359677_SNP [dm3] X_12465644_SNP [dm6]	C	T	3.016e^-4	0.733	INTRON CG42258
3R	15325955	3R_15325955_DEL [dm3] 3R_19500233_DEL [dm6]	TCAGCAATCCATAAAT...	T	3.017e^-4	0.733	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	17887201	2L_17887201_SNP [dm3] 2L_17887201_SNP [dm6]	T	A	3.027e^-4	0.733	INTERGENIC
3L	2799952	3L_2799952_SNP [dm3] 3L_2799952_SNP [dm6]	G	A	3.036e^-4	0.733	INTRON CG43444	TF binding site mE1_TFBS_sbb
2R	18733703	2R_18733703_SNP [dm3] 2R_22846180_SNP [dm6]	C	A	3.036e^-4	0.733	SYNONYMOUS_CODING CG3649	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18380429	X_18380429_SNP [dm3] X_18486396_SNP [dm6]	A	C	3.038e^-4	0.733	INTRON psh
2R	13092567	2R_13092567_SNP [dm3] 2R_17205062_SNP [dm6]	C	T	3.043e^-4	0.733	UPSTREAM CG43237 INTERGENIC
3L	20721572	3L_20721572_SNP [dm3] 3L_20728472_SNP [dm6]	G	C	3.050e^-4	0.733	DOWNSTREAM CR43945 INTERGENIC
X	16126063	X_16126063_SNP [dm3] X_16232030_SNP [dm6]	T	G	3.051e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	3090995	3L_3090995_SNP [dm3] 3L_3090995_SNP [dm6]	C	T	3.052e^-4	0.733	UTR_3_PRIME Cht7 DOWNSTREAM CG11486 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	14555445	3L_14555445_SNP [dm3] 3L_14562345_SNP [dm6]	A	T	3.056e^-4	0.733	INTRON CG34039	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
2R	14452607	2R_14452607_SNP [dm3] 2R_18565102_SNP [dm6]	G	A	3.057e^-4	0.733	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	1190943	X_1190943_SNP [dm3] X_1296910_SNP [dm6]	T	C	3.060e^-4	0.733	INTRON DAAM	TF binding site mE1_TFBS_chinmo
3R	26255759	3R_26255759_SNP [dm3] 3R_30430037_SNP [dm6]	T	A	3.069e^-4	0.733	INTRON CG15533	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11849590	2R_11849590_SNP [dm3] 2R_15962085_SNP [dm6]	T	G	3.070e^-4	0.733	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17143504	2R_17143504_SNP [dm3] 2R_21255999_SNP [dm6]	G	A	3.071e^-4	0.733	START_GAINED Rgk3 UTR_5_PRIME Rgk3
2L	7025296	2L_7025296_SNP [dm3] 2L_7025296_SNP [dm6]	C	A	3.072e^-4	0.733	NON_SYNONYMOUS_CODING CG31908	TF binding site mE1_TFBS_cad
2R	9146868	2R_9146868_SNP [dm3] 2R_13259363_SNP [dm6]	C	T	3.074e^-4	0.733	UPSTREAM CG42319 DOWNSTREAM CG10799 INTERGENIC
3L	12290826	3L_12290826_SNP [dm3] 3L_12297726_SNP [dm6]	C	T	3.075e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_cad
2R	13932329	2R_13932329_SNP [dm3] 2R_18044824_SNP [dm6]	A	G	3.075e^-4	0.733	SYNONYMOUS_CODING CG5770
3L	4238717	3L_4238717_SNP [dm3] 3L_4238717_SNP [dm6]	G	T	3.075e^-4	0.733	INTERGENIC
X	5010208	X_5010208_SNP [dm3] X_5116175_SNP [dm6]	T	G	3.075e^-4	0.733	INTRON rg & 1 other
X	5055388	X_5055388_SNP [dm3] X_5161355_SNP [dm6]	C	A	3.089e^-4	0.733	INTRON rg & 1 other
X	14208544	X_14208544_SNP [dm3] X_14314511_SNP [dm6]	A	T	3.096e^-4	0.733	DOWNSTREAM betaNACtes2 INTERGENIC
2L	13315113	2L_13315113_SNP [dm3] 2L_13315113_SNP [dm6]	A	G	3.116e^-4	0.733	INTRON CG43778
3R	12364673	3R_12364673_SNP [dm3] 3R_16538951_SNP [dm6]	C	G	3.117e^-4	0.733	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_h mE1_TFBS_HSA
2R	3177340	2R_3177340_SNP [dm3] 2R_7289835_SNP [dm6]	G	A	3.123e^-4	0.733	INTRON pwn
2L	14748825	2L_14748825_SNP [dm3] 2L_14748825_SNP [dm6]	C	T	3.123e^-4	0.733	INTERGENIC
2R	5640340	2R_5640340_SNP [dm3] 2R_9752835_SNP [dm6]	G	A	3.125e^-4	0.733	UPSTREAM trpl INTERGENIC
2R	11724908	2R_11724908_SNP [dm3] 2R_15837403_SNP [dm6]	C	T	3.134e^-4	0.733	INTRON tun	regulatory region REDfly_CRMs
3L	13184096	3L_13184096_SNP [dm3] 3L_13190996_SNP [dm6]	G	A	3.137e^-4	0.733	INTERGENIC
2L	4292764	2L_4292764_SNP [dm3] 2L_4292764_SNP [dm6]	T	C	3.137e^-4	0.733	INTRON tutl
3R	11905552	3R_11905552_SNP [dm3] 3R_16079830_SNP [dm6]	G	A	3.147e^-4	0.733	NON_SYNONYMOUS_CODING CG32855 INTRON Mhcl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5572148	3L_5572148_SNP [dm3] 3L_5579048_SNP [dm6]	G	T	3.159e^-4	0.733	INTERGENIC
3L	11722638	3L_11722638_SNP [dm3] 3L_11729538_SNP [dm6]	G	A	3.164e^-4	0.733	SYNONYMOUS_CODING CG32088
2L	13441672	2L_13441672_SNP [dm3] 2L_13441672_SNP [dm6]	A	G	3.166e^-4	0.733	INTRON CG42784 EXON CR45683
3R	24353994	3R_24353994_SNP [dm3] 3R_28528272_SNP [dm6]	G	A	3.168e^-4	0.733	NON_SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24494865	3R_24494865_SNP [dm3] 3R_28669143_SNP [dm6]	T	G	3.172e^-4	0.733	UPSTREAM CG33346 INTERGENIC
3R	27089632	3R_27089632_SNP [dm3] 3R_31263910_SNP [dm6]	A	C	3.173e^-4	0.733	DOWNSTREAM CG18673 INTERGENIC
3R	25593360	3R_25593360_SNP [dm3] 3R_29767638_SNP [dm6]	T	A	3.177e^-4	0.733	INTRON kay	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	5774054	2L_5774054_SNP [dm3] 2L_5774054_SNP [dm6]	A	G	3.178e^-4	0.733	UPSTREAM CG9171 INTRON CG9171	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25613518	3R_25613518_SNP [dm3] 3R_29787796_SNP [dm6]	G	A	3.179e^-4	0.733	INTRON kay
3L	12424540	3L_12424540_SNP [dm3] 3L_12431440_SNP [dm6]	C	G	3.184e^-4	0.733	INTRON toe	TF binding site BDTNP1_TFBS_dl
2R	19733931	2R_19733931_SNP [dm3] 2R_23846408_SNP [dm6]	A	C	3.187e^-4	0.733	NON_SYNONYMOUS_CODING CG5554 DOWNSTREAM ytr	TF binding site mE1_TFBS_cad
2R	7328465	2R_7328465_SNP [dm3] 2R_11440960_SNP [dm6]	T	A	3.193e^-4	0.733	INTRON CG7777
2L	19743827	2L_19743827_SNP [dm3] 2L_19743827_SNP [dm6]	G	A	3.193e^-4	0.733	SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4238728	3L_4238728_SNP [dm3] 3L_4238728_SNP [dm6]	A	T	3.210e^-4	0.733	INTERGENIC
2R	3471298	2R_3471298_SNP [dm3] 2R_7583793_SNP [dm6]	T	C	3.215e^-4	0.733	INTRON blow
3L	7874174	3L_7874174_SNP [dm3] 3L_7881074_SNP [dm6]	A	G	3.216e^-4	0.733	INTRON CG32365
3R	14291727	3R_14291727_SNP [dm3] 3R_18466005_SNP [dm6]	T	A	3.219e^-4	0.733	INTRON fru
2R	10233208	2R_10233208_SNP [dm3] 2R_14345703_SNP [dm6]	C	T	3.222e^-4	0.733	INTRON Shroom
3R	24829704	3R_24829704_SNP [dm3] 3R_29003982_SNP [dm6]	T	C	3.223e^-4	0.733	INTRON wat
X	13934383	X_13934383_DEL [dm3] X_14040350_DEL [dm6]	TT	T	3.224e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15189116	2R_15189116_SNP [dm3] 2R_19301611_SNP [dm6]	G	T	3.225e^-4	0.733	INTRON Tab2	TF binding site mE1_TFBS_inv
3L	21424844	3L_21424844_SNP [dm3] 3L_21431744_SNP [dm6]	C	G	3.229e^-4	0.733	NON_SYNONYMOUS_CODING CG33288 INTRON barc	TF binding site mE1_TFBS_sens
2R	9556506	2R_9556506_SNP [dm3] 2R_13669001_SNP [dm6]	G	T	3.229e^-4	0.733	NON_SYNONYMOUS_CODING CG18368 INTRON fas	TF binding site BDTNP1_TFBS_twi
2L	16943256	2L_16943256_SNP [dm3] 2L_16943256_SNP [dm6]	G	A	3.230e^-4	0.733	INTERGENIC
2L	17891596	2L_17891596_SNP [dm3] 2L_17891596_SNP [dm6]	C	T	3.232e^-4	0.733	INTERGENIC
2R	11251263	2R_11251263_SNP [dm3] 2R_15363758_SNP [dm6]	T	A	3.237e^-4	0.733	INTRON unc-5
3L	19448906	3L_19448906_SNP [dm3] 3L_19455806_SNP [dm6]	A	G	3.241e^-4	0.733	DOWNSTREAM CR45434 INTERGENIC
2L	14340008	2L_14340008_SNP [dm3] 2L_14340008_SNP [dm6]	C	T	3.242e^-4	0.733	UTR_3_PRIME CG15286 INTRON CG33090
2L	19694845	2L_19694845_SNP [dm3] 2L_19694845_SNP [dm6]	G	A	3.242e^-4	0.733	INTRON Lar
2R	11976067	2R_11976067_SNP [dm3] 2R_16088562_SNP [dm6]	T	A	3.244e^-4	0.733	INTRON Dg
3R	26318780	3R_26318780_SNP [dm3] 3R_30493058_SNP [dm6]	C	G	3.248e^-4	0.733	SYNONYMOUS_CODING PH4alphaMP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24829711	3R_24829711_SNP [dm3] 3R_29003989_SNP [dm6]	T	A	3.261e^-4	0.733	INTRON wat
2R	19726813	2R_19726813_SNP [dm3] 2R_23839290_SNP [dm6]	T	A	3.266e^-4	0.733	UTR_3_PRIME CG5549 DOWNSTREAM snoRNA:Psi18S-176
X	5489798	X_5489798_SNP [dm3] X_5595765_SNP [dm6]	A	T	3.268e^-4	0.733	INTRON Vsx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	17799688	2L_17799688_SNP [dm3] 2L_17799688_SNP [dm6]	T	A	3.271e^-4	0.733	INTRON CadN2
3R	4364658	3R_4364658_SNP [dm3] 3R_8538936_SNP [dm6]	T	A	3.271e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	14686016	2L_14686016_SNP [dm3] 2L_14686016_SNP [dm6]	A	G	3.272e^-4	0.733	INTRON osp
2L	7057433	2L_7057433_SNP [dm3] 2L_7057433_SNP [dm6]	C	T	3.275e^-4	0.733	SYNONYMOUS_CODING Mnn1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10636889	2L_10636889_SNP [dm3] 2L_10636889_SNP [dm6]	C	T	3.275e^-4	0.733	INTRON CG7329
X	4099366	X_4099366_SNP [dm3] X_4205333_SNP [dm6]	C	T	3.275e^-4	0.733	INTRON Fas2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	17891665	3L_17891665_SNP [dm3] 3L_17898565_SNP [dm6]	G	A	3.275e^-4	0.733	DOWNSTREAM Prestin INTERGENIC
3L	20748736	3L_20748736_SNP [dm3] 3L_20755636_SNP [dm6]	C	A	3.275e^-4	0.733	NON_SYNONYMOUS_CODING CG33912	TF binding site mE1_TFBS_inv
2L	13213325	2L_13213325_SNP [dm3] 2L_13213325_SNP [dm6]	C	A	3.283e^-4	0.733	NON_SYNONYMOUS_CODING kek4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18175454	2R_18175454_INS [dm3] 2R_22287949_INS [dm6]	T	TT	3.286e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24818894	3R_24818894_SNP [dm3] 3R_28993172_SNP [dm6]	C	A	3.297e^-4	0.733	UTR_3_PRIME wat
2L	2025843	2L_2025843_SNP [dm3] 2L_2025843_SNP [dm6]	C	A	3.298e^-4	0.733	INTRON CG4238
3L	20627024	3L_20627024_SNP [dm3] 3L_20633924_SNP [dm6]	G	T	3.301e^-4	0.733	UPSTREAM CR44682 DOWNSTREAM CR44681 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	10543729	X_10543729_SNP [dm3] X_10649696_SNP [dm6]	A	G	3.309e^-4	0.733	INTRON X11Lbeta
X	10543723	X_10543723_SNP [dm3] X_10649690_SNP [dm6]	G	C	3.311e^-4	0.733	INTRON X11Lbeta
X	4865876	X_4865876_DEL [dm3] X_4971843_DEL [dm6]	ATATATATATATATAT...	A	3.316e^-4	0.733	INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	1598587	2L_1598587_SNP [dm3] 2L_1598587_SNP [dm6]	T	G	3.322e^-4	0.733	INTRON haf & 1 other
3R	2868311	3R_2868311_INS [dm3] 3R_7042589_INS [dm6]	C	CGGA	3.325e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	14231319	X_14231319_SNP [dm3] X_14337286_SNP [dm6]	T	C	3.326e^-4	0.733	INTRON dpr8
3L	1900228	3L_1900228_SNP [dm3] 3L_1900228_SNP [dm6]	T	C	3.336e^-4	0.733	DOWNSTREAM CG1887 INTRON CG1887
3L	11279051	3L_11279051_SNP [dm3] 3L_11285951_SNP [dm6]	C	T	3.340e^-4	0.733	DOWNSTREAM CR45404 INTERGENIC
2L	5869477	2L_5869477_SNP [dm3] 2L_5869477_SNP [dm6]	T	C	3.344e^-4	0.733	INTRON rau
3L	13317500	3L_13317500_SNP [dm3] 3L_13324400_SNP [dm6]	A	C	3.345e^-4	0.733	EXON CR44558
X	7617315	X_7617315_SNP [dm3] X_7723282_SNP [dm6]	C	T	3.348e^-4	0.733	SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19726352	2R_19726352_SNP [dm3] 2R_23838829_SNP [dm6]	T	G	3.349e^-4	0.733	UTR_3_PRIME CG5549
2L	2025849	2L_2025849_SNP [dm3] 2L_2025849_SNP [dm6]	T	C	3.350e^-4	0.733	INTRON CG4238
3R	20995600	3R_20995600_SNP [dm3] 3R_25169878_SNP [dm6]	A	G	3.352e^-4	0.733	INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl
3L	5572178	3L_5572178_SNP [dm3] 3L_5579078_SNP [dm6]	A	T	3.356e^-4	0.733	INTERGENIC
2R	13525441	2R_13525441_SNP [dm3] 2R_17637936_SNP [dm6]	T	G	3.356e^-4	0.733	INTRON CG10936
2R	13525442	2R_13525442_SNP [dm3] 2R_17637937_SNP [dm6]	C	G	3.356e^-4	0.733	INTRON CG10936
2R	13176660	2R_13176660_DEL [dm3] 2R_17289155_DEL [dm6]	GC	G	3.362e^-4	0.733	INTRON mbl
3R	24831954	3R_24831954_SNP [dm3] 3R_29006232_SNP [dm6]	G	T	3.363e^-4	0.733	INTRON wat
2R	21129922	2R_21129922_SNP [dm3] 2R_25242399_SNP [dm6]	C	A	3.367e^-4	0.733	INTRON CG9380
2L	4106375	2L_4106375_SNP [dm3] 2L_4106375_SNP [dm6]	A	C	3.368e^-4	0.733	INTRON ed
2L	4106377	2L_4106377_SNP [dm3] 2L_4106377_SNP [dm6]	T	A	3.368e^-4	0.733	INTRON ed
3R	4364688	3R_4364688_SNP [dm3] 3R_8538966_SNP [dm6]	A	G	3.379e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	20748745	3L_20748745_SNP [dm3] 3L_20755645_SNP [dm6]	T	A	3.379e^-4	0.733	NON_SYNONYMOUS_CODING CG33912	TF binding site mE1_TFBS_inv
2R	2432713	2R_2432713_SNP [dm3] 2R_6545208_SNP [dm6]	A	T	3.382e^-4	0.733	INTRON jing	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10946936	2R_10946936_SNP [dm3] 2R_15059431_SNP [dm6]	G	C	3.394e^-4	0.733	INTERGENIC
3R	19165335	3R_19165335_SNP [dm3] 3R_23339613_SNP [dm6]	T	C	3.397e^-4	0.733	INTRON pnt
X	2834808	X_2834808_SNP [dm3] X_2940775_SNP [dm6]	C	A	3.397e^-4	0.733	UPSTREAM CG14421 DOWNSTREAM CG14420 INTRON kirre
2L	16170031	2L_16170031_SNP [dm3] 2L_16170031_SNP [dm6]	C	T	3.402e^-4	0.733	INTRON Ca-alpha1D
3L	14815037	3L_14815037_SNP [dm3] 3L_14821937_SNP [dm6]	A	C	3.403e^-4	0.733	INTRON CG17839
3L	3874896	3L_3874896_SNP [dm3] 3L_3874896_SNP [dm6]	T	A	3.404e^-4	0.733	INTERGENIC
2L	19426916	2L_19426916_SNP [dm3] 2L_19426916_SNP [dm6]	T	A	3.407e^-4	0.733	UPSTREAM CG16771 & 1 other INTRON CG16771 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	19243568	3R_19243568_SNP [dm3] 3R_23417846_SNP [dm6]	A	T	3.409e^-4	0.733	INTRON CG4374
2L	957326	2L_957326_SNP [dm3] 2L_957326_SNP [dm6]	G	C	3.424e^-4	0.734	SYNONYMOUS_CODING CG4341
2R	19296677	2R_19296677_SNP [dm3] 2R_23409154_SNP [dm6]	A	G	3.427e^-4	0.734	INTERGENIC
X	14805567	X_14805567_SNP [dm3] X_14911534_SNP [dm6]	T	C	3.431e^-4	0.734	UPSTREAM CG14406 DOWNSTREAM CG12398 INTRON Flo2
3L	5982580	3L_5982580_SNP [dm3] 3L_5989480_SNP [dm6]	T	A	3.435e^-4	0.734	INTERGENIC
2L	17324045	2L_17324045_SNP [dm3] 2L_17324045_SNP [dm6]	T	C	3.435e^-4	0.734	INTERGENIC
3R	24444894	3R_24444894_SNP [dm3] 3R_28619172_SNP [dm6]	A	G	3.443e^-4	0.734	INTRON CG10011
3L	4484340	3L_4484340_SNP [dm3] 3L_4484340_SNP [dm6]	T	C	3.444e^-4	0.734	UTR_3_PRIME CG11350 DOWNSTREAM CG13722	TF binding site mE1_TFBS_HSA
2R	9556484	2R_9556484_SNP [dm3] 2R_13668979_SNP [dm6]	T	A	3.448e^-4	0.734	SYNONYMOUS_CODING CG18368 INTRON fas	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	4292783	2L_4292783_SNP [dm3] 2L_4292783_SNP [dm6]	A	G	3.451e^-4	0.734	INTRON tutl
2L	17870058	2L_17870058_SNP [dm3] 2L_17870058_SNP [dm6]	G	A	3.476e^-4	0.738	INTRON CadN2	TF binding site mE1_TFBS_HSA
2R	13631533	2R_13631533_SNP [dm3] 2R_17744028_SNP [dm6]	C	T	3.478e^-4	0.738	UPSTREAM Ir54a DOWNSTREAM CG4996 INTERGENIC
3L	4238711	3L_4238711_SNP [dm3] 3L_4238711_SNP [dm6]	T	C	3.484e^-4	0.739	INTERGENIC
2L	12661118	2L_12661118_INS [dm3] 2L_12661118_INS [dm6]	A	ATTAA	3.494e^-4	0.739	INTRON pdm2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	16890216	3R_16890216_SNP [dm3] 3R_21064494_SNP [dm6]	C	T	3.498e^-4	0.739	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3L	20746112	3L_20746112_SNP [dm3] 3L_20753012_SNP [dm6]	C	T	3.503e^-4	0.739	INTERGENIC
3L	14817336	3L_14817336_SNP [dm3] 3L_14824236_SNP [dm6]	G	A	3.503e^-4	0.739	INTRON CG17839
X	19111228	X_19111228_SNP [dm3] X_19217195_SNP [dm6]	A	C	3.504e^-4	0.739	DOWNSTREAM Muc18B INTERGENIC
2L	3235270	2L_3235270_SNP [dm3] 2L_3235270_SNP [dm6]	T	C	3.507e^-4	0.739	INTERGENIC
3L	8274648	3L_8274648_SNP [dm3] 3L_8281548_SNP [dm6]	G	A	3.515e^-4	0.74	UTR_3_PRIME Dscam4 DOWNSTREAM Dscam4 & 1 other
2R	12510094	2R_12510094_SNP [dm3] 2R_16622589_SNP [dm6]	C	T	3.524e^-4	0.74	INTRON CG5065	TF binding site mE1_TFBS_cad
3L	18024635	3L_18024635_SNP [dm3] 3L_18031535_SNP [dm6]	G	A	3.525e^-4	0.74	INTRON Eip75B
3L	4484327	3L_4484327_SNP [dm3] 3L_4484327_SNP [dm6]	C	G	3.530e^-4	0.74	UTR_3_PRIME CG11350 DOWNSTREAM CG13722	TF binding site mE1_TFBS_HSA
3R	27136518	3R_27136518_SNP [dm3] 3R_31310796_SNP [dm6]	T	A	3.534e^-4	0.74	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	18260542	X_18260542_SNP [dm3] X_18366509_SNP [dm6]	G	T	3.546e^-4	0.74	START_GAINED CrebB UTR_5_PRIME CrebB UPSTREAM CrebB	TF binding site BDTNP1_TFBS_dl
2R	13523057	2R_13523057_DEL [dm3] 2R_17635552_DEL [dm6]	GC	G	3.560e^-4	0.74	INTRON CG10936
X	18380392	X_18380392_SNP [dm3] X_18486359_SNP [dm6]	A	C	3.562e^-4	0.74	INTRON psh
2L	16700760	2L_16700760_SNP [dm3] 2L_16700760_SNP [dm6]	G	T	3.568e^-4	0.74	DOWNSTREAM grp & 1 other EXON CR43669
3L	12121430	3L_12121430_SNP [dm3] 3L_12128330_SNP [dm6]	T	C	3.574e^-4	0.74	NON_SYNONYMOUS_CODING CG34241 UPSTREAM Ir68b
X	4865897	X_4865897_INS [dm3] X_4971864_INS [dm6]	A	AGGACC	3.575e^-4	0.74	INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	5307264	2L_5307264_SNP [dm3] 2L_5307264_SNP [dm6]	G	A	3.579e^-4	0.74	INTRON vri	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	4652255	X_4652255_SNP [dm3] X_4758222_SNP [dm6]	A	G	3.581e^-4	0.74	INTERGENIC
2R	14394575	2R_14394575_SNP [dm3] 2R_18507070_SNP [dm6]	A	G	3.581e^-4	0.74	INTERGENIC
3R	24345887	3R_24345887_SNP [dm3] 3R_28520165_SNP [dm6]	G	A	3.583e^-4	0.74	SYNONYMOUS_CODING CG31051 DOWNSTREAM Dhc98D & 1 other	TF binding site mE1_TFBS_cad
3L	6172649	3L_6172649_SNP [dm3] 3L_6179549_SNP [dm6]	G	A	3.586e^-4	0.74	SYNONYMOUS_CODING CG10274 DOWNSTREAM CG7376	TF binding site BDTNP1_TFBS_twi
3L	11269583	3L_11269583_SNP [dm3] 3L_11276483_SNP [dm6]	T	C	3.587e^-4	0.74	INTERGENIC
2L	12207759	2L_12207759_SNP [dm3] 2L_12207759_SNP [dm6]	T	C	3.591e^-4	0.74	UTR_5_PRIME CG31759 UPSTREAM CG31759 INTRON aret
3L	2537851	3L_2537851_SNP [dm3] 3L_2537851_SNP [dm6]	G	T	3.592e^-4	0.74	INTRON Spn
X	12665661	X_12665661_SNP [dm3] X_12771628_SNP [dm6]	G	A	3.593e^-4	0.74	UTR_3_PRIME CG3812 DOWNSTREAM CG32647 & 1 other
2R	20952453	2R_20952453_SNP [dm3] 2R_25064930_SNP [dm6]	A	C	3.600e^-4	0.741	DOWNSTREAM gsb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	2170084	3L_2170084_SNP [dm3] 3L_2170084_SNP [dm6]	A	C	3.611e^-4	0.741	SYNONYMOUS_CODING CG5704 UPSTREAM CG15879
X	12665713	X_12665713_SNP [dm3] X_12771680_SNP [dm6]	A	C	3.618e^-4	0.741	UTR_3_PRIME CG3812 DOWNSTREAM CG32647 & 1 other
X	20319567	X_20319567_SNP [dm3] X_20448540_SNP [dm6]	A	G	3.620e^-4	0.741	UPSTREAM CG32506 INTERGENIC
2R	18861336	2R_18861336_SNP [dm3] 2R_22973813_SNP [dm6]	T	A	3.620e^-4	0.741	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	13241825	3L_13241825_SNP [dm3] 3L_13248725_SNP [dm6]	C	A	3.621e^-4	0.741	UPSTREAM tRNA:D2:69F & 1 other INTRON caps
3L	9128939	3L_9128939_SNP [dm3] 3L_9135839_SNP [dm6]	C	G	3.625e^-4	0.741	UTR_3_PRIME Dhpr & 1 other DOWNSTREAM Dhpr	TF binding site BDTNP1_TFBS_dl
2R	14452666	2R_14452666_SNP [dm3] 2R_18565161_SNP [dm6]	C	T	3.626e^-4	0.741	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	20176231	3L_20176231_SNP [dm3] 3L_20183131_SNP [dm6]	T	A	3.632e^-4	0.741	INTRON CG42674	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8156849	X_8156849_SNP [dm3] X_8262816_SNP [dm6]	T	C	3.640e^-4	0.742	INTRON CG1632	TF binding site BDTNP1_TFBS_da
3R	27132176	3R_27132176_SNP [dm3] 3R_31306454_SNP [dm6]	A	T	3.651e^-4	0.743	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14086291	2R_14086291_SNP [dm3] 2R_18198786_SNP [dm6]	A	G	3.656e^-4	0.743	INTERGENIC
2R	12116819	2R_12116819_SNP [dm3] 2R_16229314_SNP [dm6]	A	G	3.660e^-4	0.743	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	502675	3L_502675_SNP [dm3] 3L_502675_SNP [dm6]	T	C	3.681e^-4	0.744	INTRON klar
2R	11251011	2R_11251011_SNP [dm3] 2R_15363506_SNP [dm6]	C	T	3.682e^-4	0.744	INTRON unc-5
3L	16202299	3L_16202299_SNP [dm3] 3L_16209199_SNP [dm6]	C	T	3.683e^-4	0.744	INTERGENIC	TF binding site mE1_TFBS_cad
2L	17790175	2L_17790175_SNP [dm3] 2L_17790175_SNP [dm6]	G	A	3.685e^-4	0.744	INTRON CadN2
3L	18663595	3L_18663595_SNP [dm3] 3L_18670495_SNP [dm6]	T	C	3.690e^-4	0.744	SYNONYMOUS_CODING Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	5251231	X_5251231_SNP [dm3] X_5357198_SNP [dm6]	G	A	3.690e^-4	0.744	INTRON SK
X	1191641	X_1191641_SNP [dm3] X_1297608_SNP [dm6]	C	A	3.691e^-4	0.744	DOWNSTREAM CG32811 INTRON DAAM	TF binding site mE1_TFBS_chinmo
X	10275318	X_10275318_SNP [dm3] X_10381285_SNP [dm6]	T	C	3.703e^-4	0.744	UTR_5_PRIME CG32681 INTRON CG17841	TF binding site mE1_TFBS_chinmo
2L	11337397	2L_11337397_SNP [dm3] 2L_11337397_SNP [dm6]	G	T	3.704e^-4	0.744	INTERGENIC
3R	25798246	3R_25798246_SNP [dm3] 3R_29972524_SNP [dm6]	C	T	3.704e^-4	0.744	INTERGENIC
2L	2025971	2L_2025971_SNP [dm3] 2L_2025971_SNP [dm6]	C	G	3.715e^-4	0.744	INTRON CG4238
2L	15960200	2L_15960200_SNP [dm3] 2L_15960200_SNP [dm6]	C	G	3.716e^-4	0.744	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
2R	10382797	2R_10382797_SNP [dm3] 2R_14495292_SNP [dm6]	A	G	3.718e^-4	0.744	SYNONYMOUS_CODING L	TF binding site mE1_TFBS_cad
2R	11805811	2R_11805811_INS [dm3] 2R_15918306_INS [dm6]	T	TATAAAGAGT	3.720e^-4	0.744	INTRON sli	TF binding site mE1_TFBS_cad
3L	14816333	3L_14816333_SNP [dm3] 3L_14823233_SNP [dm6]	G	A	3.731e^-4	0.745	INTRON CG17839
3L	3875106	3L_3875106_SNP [dm3] 3L_3875106_SNP [dm6]	G	A	3.744e^-4	0.745	INTERGENIC
2R	19726852	2R_19726852_SNP [dm3] 2R_23839329_SNP [dm6]	G	C	3.745e^-4	0.745	UTR_3_PRIME CG5549 DOWNSTREAM snoRNA:Psi18S-176
3L	19449565	3L_19449565_SNP [dm3] 3L_19456465_SNP [dm6]	T	C	3.751e^-4	0.745	DOWNSTREAM CR45434 INTERGENIC
3R	4382182	3R_4382182_SNP [dm3] 3R_8556460_SNP [dm6]	G	A	3.755e^-4	0.745	INTERGENIC
2L	17567445	2L_17567445_SNP [dm3] 2L_17567445_SNP [dm6]	G	A	3.760e^-4	0.745	DOWNSTREAM mir-124 INTERGENIC
X	12665890	X_12665890_SNP [dm3] X_12771857_SNP [dm6]	C	G	3.777e^-4	0.745	UTR_3_PRIME CG3812 & 1 other DOWNSTREAM CG3812
3L	13310271	3L_13310271_SNP [dm3] 3L_13317171_SNP [dm6]	C	T	3.781e^-4	0.745	INTERGENIC
2R	5970480	2R_5970480_SNP [dm3] 2R_10082975_SNP [dm6]	C	T	3.790e^-4	0.745	SPLICE_SITE_REGION egr INTRON egr
2R	14678576	2R_14678576_SNP [dm3] 2R_18791071_SNP [dm6]	C	A	3.791e^-4	0.745	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1384234	2L_1384234_SNP [dm3] 2L_1384234_SNP [dm6]	A	T	3.792e^-4	0.745	INTRON lea
2L	6843855	2L_6843855_DEL [dm3] 2L_6843855_DEL [dm6]	CAC	C	3.794e^-4	0.745	INTERGENIC
3L	14813565	3L_14813565_SNP [dm3] 3L_14820465_SNP [dm6]	G	A	3.795e^-4	0.745	INTRON CG17839
2L	20689873	2L_20689873_SNP [dm3] 2L_20689873_SNP [dm6]	C	T	3.796e^-4	0.745	INTRON Hr38	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3R	10303359	3R_10303359_SNP [dm3] 3R_14477637_SNP [dm6]	T	C	3.796e^-4	0.745	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens
2R	6588312	2R_6588312_SNP [dm3] 2R_10700807_SNP [dm6]	G	C	3.799e^-4	0.745	INTRON stan
3L	16635148	3L_16635148_SNP [dm3] 3L_16642048_SNP [dm6]	G	T	3.801e^-4	0.745	INTRON Abl
3R	10435018	3R_10435018_SNP [dm3] 3R_14609296_SNP [dm6]	T	G	3.806e^-4	0.745	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11269498	3L_11269498_INS [dm3] 3L_11276398_INS [dm6]	A	AA	3.810e^-4	0.745	INTERGENIC
2R	20936285	2R_20936285_SNP [dm3] 2R_25048762_SNP [dm6]	C	T	3.813e^-4	0.745	INTRON gsb-n	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6115714	X_6115714_SNP [dm3] X_6221681_SNP [dm6]	C	T	3.814e^-4	0.745	SYNONYMOUS_CODING Efr	TF binding site mE1_TFBS_sens
3L	22883797	3L_22883797_SNP [dm3] 3L_22890697_SNP [dm6]	A	G	3.817e^-4	0.745	INTRON slif	transposable element FlyBase
X	2691367	X_2691367_SNP [dm3] X_2797334_SNP [dm6]	G	A	3.818e^-4	0.745	UPSTREAM w INTRON kirre	TF binding site BDTNP1_TFBS_z
3R	14148838	3R_14148838_SNP [dm3] 3R_18323116_SNP [dm6]	T	A	3.819e^-4	0.745	INTRON CG31235
X	19088112	X_19088112_SNP [dm3] X_19194079_SNP [dm6]	G	A	3.823e^-4	0.745	UPSTREAM CG7914 INTRON CG14194	TF binding site BDTNP1_TFBS_dl
2L	1383805	2L_1383805_SNP [dm3] 2L_1383805_SNP [dm6]	G	C	3.828e^-4	0.745	INTRON lea
X	22267450	X_22267450_SNP [dm3] X_22865614_SNP [dm6]	A	T	3.834e^-4	0.745	INTRON CG42346
3R	23980857	3R_23980857_INS [dm3] 3R_28155135_INS [dm6]	A	AA	3.834e^-4	0.745	INTRON CG34354	TF binding site BDTNP1_TFBS_twi
2L	4458510	2L_4458510_SNP [dm3] 2L_4458510_SNP [dm6]	C	G	3.839e^-4	0.745	UPSTREAM snoRNA:Me18S-C1831 & 1 other DOWNSTREAM mRpL27 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14560642	3L_14560642_SNP [dm3] 3L_14567542_SNP [dm6]	C	A	3.849e^-4	0.745	INTRON CG42758
3L	13187359	3L_13187359_SNP [dm3] 3L_13194259_SNP [dm6]	G	A	3.855e^-4	0.745	INTERGENIC
X	7620847	X_7620847_SNP [dm3] X_7726814_SNP [dm6]	T	C	3.856e^-4	0.745	SYNONYMOUS_CODING NELF-B DOWNSTREAM Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	15181889	X_15181889_SNP [dm3] X_15287856_SNP [dm6]	C	T	3.859e^-4	0.745	INTERGENIC
X	19437187	X_19437187_SNP [dm3] X_19543154_SNP [dm6]	G	C	3.859e^-4	0.745	INTRON CG32532	TF binding site BDTNP1_TFBS_da
2L	19431898	2L_19431898_SNP [dm3] 2L_19431898_SNP [dm6]	G	A	3.872e^-4	0.746	SYNONYMOUS_CODING CG9987 UPSTREAM Rab9	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12451606	3L_12451606_SNP [dm3] 3L_12458506_SNP [dm6]	G	A	3.874e^-4	0.746	INTERGENIC
3L	14832054	3L_14832054_SNP [dm3] 3L_14838954_SNP [dm6]	A	T	3.876e^-4	0.746	INTRON CG17839
3R	15072750	3R_15072750_SNP [dm3] 3R_19247028_SNP [dm6]	C	G	3.879e^-4	0.746	UPSTREAM unc79 DOWNSTREAM CG5217 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24361936	3R_24361936_SNP [dm3] 3R_28536214_SNP [dm6]	C	G	3.893e^-4	0.747	INTRON Ppn
3R	15213950	3R_15213950_SNP [dm3] 3R_19388228_SNP [dm6]	G	A	3.895e^-4	0.747	DOWNSTREAM CR34285 INTRON Ino80 & 1 other	TF binding site mE1_TFBS_sens
3L	13187364	3L_13187364_DEL [dm3] 3L_13194264_DEL [dm6]	ATTTT	A	3.897e^-4	0.747	INTERGENIC
2L	13459497	2L_13459497_SNP [dm3] 2L_13459497_SNP [dm6]	G	C	3.910e^-4	0.747	UPSTREAM CR45684 & 1 other INTRON CG42784
3R	4363255	3R_4363255_SNP [dm3] 3R_8537533_SNP [dm6]	A	G	3.919e^-4	0.747	INTERGENIC
3L	13239943	3L_13239943_SNP [dm3] 3L_13246843_SNP [dm6]	T	A	3.925e^-4	0.747	DOWNSTREAM CG32119 INTRON caps
3L	2645081	3L_2645081_SNP [dm3] 3L_2645081_SNP [dm6]	A	G	3.926e^-4	0.747	UPSTREAM CG1143 INTERGENIC
X	9007178	X_9007178_SNP [dm3] X_9113145_SNP [dm6]	T	A	3.926e^-4	0.747	INTRON AP-1gamma
2R	15697740	2R_15697740_SNP [dm3] 2R_19810235_SNP [dm6]	T	G	3.930e^-4	0.747	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1564371	3L_1564371_SNP [dm3] 3L_1564371_SNP [dm6]	A	G	3.931e^-4	0.747	INTRON CG7879
2L	8447265	2L_8447265_SNP [dm3] 2L_8447265_SNP [dm6]	A	G	3.934e^-4	0.747	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	11756923	X_11756923_SNP [dm3] X_11862890_SNP [dm6]	C	A	3.952e^-4	0.747	INTRON ATP7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2277437	2L_2277437_SNP [dm3] 2L_2277437_SNP [dm6]	A	T	3.952e^-4	0.747	DOWNSTREAM CR43753 INTRON CR43753
3L	5139485	3L_5139485_SNP [dm3] 3L_5146385_SNP [dm6]	A	C	3.963e^-4	0.747	UPSTREAM CG10671 INTRON Aats-ala-m	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	11340575	2R_11340575_DEL [dm3] 2R_15453070_DEL [dm6]	CC	C	3.968e^-4	0.747	INTRON CG43729
2L	2025936	2L_2025936_SNP [dm3] 2L_2025936_SNP [dm6]	G	A	3.968e^-4	0.747	INTRON CG4238
3R	26871231	3R_26871231_SNP [dm3] 3R_31045509_SNP [dm6]	A	C	3.973e^-4	0.747	UPSTREAM CG33920 INTRON CanA1
3R	10576200	3R_10576200_DEL [dm3] 3R_14750478_DEL [dm6]	ATAA	A	3.982e^-4	0.747	INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z
X	20438152	X_20438152_SNP [dm3] X_20567125_SNP [dm6]	T	A	3.989e^-4	0.747	DOWNSTREAM RunxB INTERGENIC
2L	15026329	2L_15026329_SNP [dm3] 2L_15026329_SNP [dm6]	C	G	3.994e^-4	0.747	SPLICE_SITE_REGION GABA-B-R1 UPSTREAM CG33310 INTRON GABA-B-R1	TF binding site mE1_TFBS_inv
2L	3114476	2L_3114476_SNP [dm3] 2L_3114476_SNP [dm6]	C	G	3.999e^-4	0.747	INTRON toc
2L	12212008	2L_12212008_SNP [dm3] 2L_12212008_SNP [dm6]	T	G	4.004e^-4	0.747	INTRON aret
X	14154318	X_14154318_SNP [dm3] X_14260285_SNP [dm6]	T	G	4.007e^-4	0.747	UPSTREAM CG1461 INTERGENIC
2L	10607298	2L_10607298_SNP [dm3] 2L_10607298_SNP [dm6]	G	A	4.007e^-4	0.747	INTRON Trim9
2R	18093182	2R_18093182_SNP [dm3] 2R_22205677_SNP [dm6]	G	A	4.009e^-4	0.747	UPSTREAM CG3292 DOWNSTREAM CG3290 INTERGENIC

By genomic position
Variant impact
Gene name

Wing_Anterior_to_L2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results