DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.540e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.02581
In_3R_Mo	0.07767

Kruskal-Wallis test

Covariate	χ²	p-value
In_2L_t	6.7683	0.0339
In_3R_K	6.5123	0.0385
In_3R_Mo	4.6745	0.0966

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2230 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	14813948	3L_14813948_SNP [dm3] 3L_14820848_SNP [dm6]	G	A	2.137e^-6	0.607	INTRON CG17839
3L	15483312	3L_15483312_SNP [dm3] 3L_15490212_SNP [dm6]	A	G	2.155e^-6	0.607	INTERGENIC
2R	12116819	2R_12116819_SNP [dm3] 2R_16229314_SNP [dm6]	A	G	2.673e^-6	0.607	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13570329	3R_13570329_SNP [dm3] 3R_17744607_SNP [dm6]	A	C	3.945e^-6	0.607	INTRON TyrRII	TF binding site mE1_TFBS_cad
X	20262267	X_20262267_SNP [dm3] X_20391240_SNP [dm6]	A	G	4.554e^-6	0.607	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	712385	3L_712385_DEL [dm3] 3L_712385_DEL [dm6]	TA	T	5.407e^-6	0.607	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	5.608e^-6	0.607	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13415564	2R_13415564_SNP [dm3] 2R_17528059_SNP [dm6]	G	A	5.848e^-6	0.607	SYNONYMOUS_CODING Patronin
3L	13553816	3L_13553816_DEL [dm3] 3L_13560716_DEL [dm6]	GTCGACGTAGCGACACT...	G	6.036e^-6	0.607	INTRON bru-3
3L	16896011	3L_16896011_SNP [dm3] 3L_16902911_SNP [dm6]	A	T	6.052e^-6	0.607	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo
3L	16202334	3L_16202334_SNP [dm3] 3L_16209234_SNP [dm6]	A	T	6.533e^-6	0.607	INTERGENIC	TF binding site mE1_TFBS_cad
3L	14929590	3L_14929590_SNP [dm3] 3L_14936490_SNP [dm6]	G	C	6.734e^-6	0.607	INTRON DCX-EMAP
3L	712399	3L_712399_SNP [dm3] 3L_712399_SNP [dm6]	A	T	7.046e^-6	0.607	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	15483333	3L_15483333_SNP [dm3] 3L_15490233_SNP [dm6]	T	C	7.054e^-6	0.607	INTERGENIC
3L	712423	3L_712423_SNP [dm3] 3L_712423_SNP [dm6]	G	C	7.276e^-6	0.607	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	13600672	3R_13600672_SNP [dm3] 3R_17774950_SNP [dm6]	C	T	7.647e^-6	0.607	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16202321	3L_16202321_SNP [dm3] 3L_16209221_SNP [dm6]	G	T	7.881e^-6	0.607	INTERGENIC	TF binding site mE1_TFBS_cad
2R	4956241	2R_4956241_SNP [dm3] 2R_9068736_SNP [dm6]	T	G	8.276e^-6	0.607	UPSTREAM ana INTRON ana
3L	712384	3L_712384_SNP [dm3] 3L_712384_SNP [dm6]	T	C	8.378e^-6	0.607	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712376	3L_712376_SNP [dm3] 3L_712376_SNP [dm6]	G	A	8.542e^-6	0.607	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	8207850	3L_8207850_SNP [dm3] 3L_8214750_SNP [dm6]	T	C	8.615e^-6	0.607	UPSTREAM CG8012 INTERGENIC
3L	13557427	3L_13557427_INS [dm3] 3L_13564327_INS [dm6]	G	TA	8.741e^-6	0.607	INTRON bru-3
3L	13557430	3L_13557430_DEL [dm3] 3L_13564330_DEL [dm6]	GTTT	G	8.741e^-6	0.607	INTRON bru-3
3L	15483419	3L_15483419_SNP [dm3] 3L_15490319_SNP [dm6]	T	A	8.904e^-6	0.607	INTERGENIC
2R	13415561	2R_13415561_SNP [dm3] 2R_17528056_SNP [dm6]	A	G	8.927e^-6	0.607	SYNONYMOUS_CODING Patronin
3R	5121979	3R_5121979_SNP [dm3] 3R_9296257_SNP [dm6]	T	G	8.954e^-6	0.607	INTRON CG8861
2R	19127148	2R_19127148_SNP [dm3] 2R_23239625_SNP [dm6]	T	G	9.049e^-6	0.607	INTERGENIC
X	4094020	X_4094020_SNP [dm3] X_4199987_SNP [dm6]	T	C	9.712e^-6	0.607	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	14489486	3L_14489486_SNP [dm3] 3L_14496386_SNP [dm6]	A	C	9.760e^-6	0.607	INTRON bbg	TF binding site mE1_TFBS_cad
3L	14489495	3L_14489495_SNP [dm3] 3L_14496395_SNP [dm6]	G	A	9.760e^-6	0.607	INTRON bbg	TF binding site mE1_TFBS_cad
3L	14489497	3L_14489497_SNP [dm3] 3L_14496397_SNP [dm6]	T	A	1.004e^-5	0.607	INTRON bbg	TF binding site mE1_TFBS_cad
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	1.082e^-5	0.612	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	17455708	3R_17455708_SNP [dm3] 3R_21629986_SNP [dm6]	G	T	1.110e^-5	0.612	INTRON E2f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	10443026	X_10443026_SNP [dm3] X_10548993_SNP [dm6]	C	T	1.121e^-5	0.612	INTRON spri
2L	376777	2L_376777_SNP [dm3] 2L_376777_SNP [dm6]	G	A	1.142e^-5	0.612	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	1109916	3L_1109916_SNP [dm3] 3L_1109916_SNP [dm6]	C	T	1.232e^-5	0.627	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	10435085	3R_10435085_SNP [dm3] 3R_14609363_SNP [dm6]	G	T	1.237e^-5	0.627	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	20262270	X_20262270_INS [dm3] X_20391243_INS [dm6]	A	ATCAATAATAATTCAA...	1.281e^-5	0.632	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11724908	2R_11724908_SNP [dm3] 2R_15837403_SNP [dm6]	C	T	1.315e^-5	0.632	INTRON tun	regulatory region REDfly_CRMs
2R	8137681	2R_8137681_SNP [dm3] 2R_12250176_SNP [dm6]	A	C	1.387e^-5	0.636	INTERGENIC
3R	6253276	3R_6253276_SNP [dm3] 3R_10427554_SNP [dm6]	G	A	1.391e^-5	0.636	INTERGENIC
2R	13506075	2R_13506075_SNP [dm3] 2R_17618570_SNP [dm6]	T	G	1.454e^-5	0.636	UPSTREAM CG44403 INTRON CG10936
3L	712388	3L_712388_DEL [dm3] 3L_712388_DEL [dm6]	AAT	A	1.491e^-5	0.636	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	20187373	3L_20187373_SNP [dm3] 3L_20194273_SNP [dm6]	G	T	1.557e^-5	0.636	INTRON CG42674
3L	712348	3L_712348_SNP [dm3] 3L_712348_SNP [dm6]	G	T	1.607e^-5	0.636	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	18202542	3L_18202542_SNP [dm3] 3L_18209442_SNP [dm6]	A	T	1.653e^-5	0.636	INTERGENIC
2L	9443434	2L_9443434_SNP [dm3] 2L_9443434_SNP [dm6]	C	T	1.661e^-5	0.636	INTRON numb
3L	14555445	3L_14555445_SNP [dm3] 3L_14562345_SNP [dm6]	A	T	1.720e^-5	0.636	INTRON CG34039	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
X	4093930	X_4093930_SNP [dm3] X_4199897_SNP [dm6]	T	C	1.741e^-5	0.636	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	13272867	3L_13272867_SNP [dm3] 3L_13279767_SNP [dm6]	A	G	1.928e^-5	0.636	UPSTREAM tRNA:CR32123:Psi DOWNSTREAM caps INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	3469607	3R_3469607_SNP [dm3] 3R_7643885_SNP [dm6]	C	T	1.980e^-5	0.636	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17952250	X_17952250_SNP [dm3] X_18058217_SNP [dm6]	G	A	2.080e^-5	0.636	INTRON Sh
2L	9463855	2L_9463855_SNP [dm3] 2L_9463855_SNP [dm6]	C	T	2.100e^-5	0.636	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_kn
3R	13600157	3R_13600157_SNP [dm3] 3R_17774435_SNP [dm6]	T	G	2.117e^-5	0.636	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
2L	21921535	2L_21921535_SNP [dm3] 2L_21921535_SNP [dm6]	T	C	2.138e^-5	0.636	INTERGENIC
2L	22020494	2L_22020494_SNP [dm3] 2L_22020494_SNP [dm6]	A	G	2.140e^-5	0.636	DOWNSTREAM CR33987 INTRON tio	TF binding site mE1_TFBS_Trl
3L	14489539	3L_14489539_INS [dm3] 3L_14496439_INS [dm6]	A	ATTTTCTA	2.157e^-5	0.636	INTRON bbg
2R	15697740	2R_15697740_SNP [dm3] 2R_19810235_SNP [dm6]	T	G	2.182e^-5	0.636	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14489459	3L_14489459_SNP [dm3] 3L_14496359_SNP [dm6]	G	C	2.273e^-5	0.636	INTRON bbg	TF binding site mE1_TFBS_cad
3L	712455	3L_712455_SNP [dm3] 3L_712455_SNP [dm6]	C	T	2.303e^-5	0.636	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	17624822	3L_17624822_SNP [dm3] 3L_17631722_SNP [dm6]	G	C	2.306e^-5	0.636	DOWNSTREAM CG7510 EXON CR44566
3L	4737896	3L_4737896_SNP [dm3] 3L_4737896_SNP [dm6]	G	A	2.333e^-5	0.636	INTRON RhoGEF64C
3L	11791042	3L_11791042_SNP [dm3] 3L_11797942_SNP [dm6]	A	G	2.351e^-5	0.636	SYNONYMOUS_CODING Klp68D	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4421150	2L_4421150_SNP [dm3] 2L_4421150_SNP [dm6]	G	T	2.360e^-5	0.636	INTRON CG15431
3L	712337	3L_712337_SNP [dm3] 3L_712337_SNP [dm6]	G	T	2.365e^-5	0.636	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	17952248	X_17952248_SNP [dm3] X_18058215_SNP [dm6]	C	A	2.416e^-5	0.636	INTRON Sh
3L	712319	3L_712319_INS [dm3] 3L_712319_INS [dm6]	C	CA	2.465e^-5	0.636	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712342	3L_712342_SNP [dm3] 3L_712342_SNP [dm6]	A	T	2.465e^-5	0.636	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	4956302	2R_4956302_SNP [dm3] 2R_9068797_SNP [dm6]	C	T	2.466e^-5	0.636	UPSTREAM ana INTRON ana
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	2.495e^-5	0.636	INTRON dnc
3L	16202369	3L_16202369_SNP [dm3] 3L_16209269_SNP [dm6]	G	A	2.503e^-5	0.636	INTERGENIC	TF binding site mE1_TFBS_cad
2R	6795340	2R_6795340_SNP [dm3] 2R_10907835_SNP [dm6]	A	G	2.518e^-5	0.636	INTERGENIC
3L	8391972	3L_8391972_SNP [dm3] 3L_8398872_SNP [dm6]	A	T	2.538e^-5	0.636	INTRON CG7120
2R	12112716	2R_12112716_SNP [dm3] 2R_16225211_SNP [dm6]	A	G	2.624e^-5	0.636	UTR_5_PRIME CG15706
3L	712235	3L_712235_SNP [dm3] 3L_712235_SNP [dm6]	C	T	2.674e^-5	0.636	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
X	17503877	X_17503877_SNP [dm3] X_17609844_SNP [dm6]	G	T	2.710e^-5	0.636	INTERGENIC
3L	711790	3L_711790_SNP [dm3] 3L_711790_SNP [dm6]	A	T	2.714e^-5	0.636	UTR_5_PRIME CG13896	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	7296139	3L_7296139_DEL [dm3] 3L_7303039_DEL [dm6]	AA	A	2.721e^-5	0.636	INTRON unc-13-4A
3L	743426	3L_743426_SNP [dm3] 3L_743426_SNP [dm6]	C	T	2.834e^-5	0.636	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	20262315	X_20262315_DEL [dm3] X_20391288_DEL [dm6]	TGATGTTTCTTAT...	T	2.847e^-5	0.636	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1675714	2L_1675714_SNP [dm3] 2L_1675714_SNP [dm6]	T	A	2.879e^-5	0.636	INTRON chinmo
2L	1675720	2L_1675720_SNP [dm3] 2L_1675720_SNP [dm6]	C	G	2.879e^-5	0.636	INTRON chinmo
3L	4737895	3L_4737895_SNP [dm3] 3L_4737895_SNP [dm6]	A	G	2.884e^-5	0.636	INTRON RhoGEF64C
2L	16957224	2L_16957224_SNP [dm3] 2L_16957224_SNP [dm6]	A	G	2.907e^-5	0.636	INTERGENIC
X	7064106	X_7064106_SNP [dm3] X_7170073_SNP [dm6]	A	T	2.916e^-5	0.636	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2R	6795339	2R_6795339_SNP [dm3] 2R_10907834_SNP [dm6]	G	T	2.928e^-5	0.636	INTERGENIC
3L	1108132	3L_1108132_SNP [dm3] 3L_1108132_SNP [dm6]	G	T	2.953e^-5	0.636	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	8137710	2R_8137710_SNP [dm3] 2R_12250205_SNP [dm6]	C	A	3.013e^-5	0.641	INTERGENIC
3L	412023	3L_412023_SNP [dm3] 3L_412023_SNP [dm6]	G	T	3.076e^-5	0.641	INTERGENIC
2L	3997257	2L_3997257_INS [dm3] 2L_3997257_INS [dm6]	T	TGA	3.077e^-5	0.641	INTERGENIC
X	7619308	X_7619308_SNP [dm3] X_7725275_SNP [dm6]	A	G	3.254e^-5	0.67	NON_SYNONYMOUS_CODING Hira DOWNSTREAM NELF-B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	712335	3L_712335_SNP [dm3] 3L_712335_SNP [dm6]	T	A	3.325e^-5	0.673	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	13600041	3R_13600041_SNP [dm3] 3R_17774319_SNP [dm6]	C	T	3.350e^-5	0.673	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3L	7777439	3L_7777439_SNP [dm3] 3L_7784339_SNP [dm6]	C	T	3.373e^-5	0.673	INTRON CG32369
3L	14489501	3L_14489501_DEL [dm3] 3L_14496401_DEL [dm6]	TA	T	3.410e^-5	0.673	INTRON bbg	TF binding site mE1_TFBS_cad
2R	4950454	2R_4950454_SNP [dm3] 2R_9062949_SNP [dm6]	G	A	3.543e^-5	0.68	INTRON ana	regulatory region REDfly_CRMs
2L	15090507	2L_15090507_SNP [dm3] 2L_15090507_SNP [dm6]	T	C	3.583e^-5	0.68	INTRON CG15270
3R	10436858	3R_10436858_SNP [dm3] 3R_14611136_SNP [dm6]	T	C	3.612e^-5	0.68	INTRON CG14853
3L	7156753	3L_7156753_SNP [dm3] 3L_7163653_SNP [dm6]	G	A	3.627e^-5	0.68	INTRON Dscam2
3L	7156769	3L_7156769_SNP [dm3] 3L_7163669_SNP [dm6]	G	A	3.627e^-5	0.68	INTRON Dscam2
3L	15488893	3L_15488893_DEL [dm3] 3L_15495793_DEL [dm6]	TCT	T	3.723e^-5	0.691	UPSTREAM CG12355 & 1 other INTERGENIC
3L	712322	3L_712322_SNP [dm3] 3L_712322_SNP [dm6]	A	G	3.785e^-5	0.696	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	6253307	3R_6253307_SNP [dm3] 3R_10427585_SNP [dm6]	G	T	3.874e^-5	0.705	INTERGENIC
3L	15483234	3L_15483234_SNP [dm3] 3L_15490134_SNP [dm6]	A	C	3.931e^-5	0.709	INTERGENIC
X	7619313	X_7619313_SNP [dm3] X_7725280_SNP [dm6]	C	A	3.992e^-5	0.713	SYNONYMOUS_CODING Hira DOWNSTREAM NELF-B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17952247	X_17952247_SNP [dm3] X_18058214_SNP [dm6]	A	C	4.180e^-5	0.728	INTRON Sh
2R	4953988	2R_4953988_SNP [dm3] 2R_9066483_SNP [dm6]	T	C	4.199e^-5	0.728	INTRON ana	regulatory region REDfly_CRMs
3L	712377	3L_712377_SNP [dm3] 3L_712377_SNP [dm6]	A	C	4.320e^-5	0.728	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	16239804	2L_16239804_SNP [dm3] 2L_16239804_SNP [dm6]	C	T	4.338e^-5	0.728	INTRON CG42817
2R	17894354	2R_17894354_SNP [dm3] 2R_22006849_SNP [dm6]	A	G	4.344e^-5	0.728	INTRON CG34370
2L	21795611	2L_21795611_SNP [dm3] 2L_21795611_SNP [dm6]	C	G	4.346e^-5	0.728	UPSTREAM CG31612 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
3L	8391974	3L_8391974_SNP [dm3] 3L_8398874_SNP [dm6]	G	A	4.421e^-5	0.728	INTRON CG7120
X	6258888	X_6258888_SNP [dm3] X_6364855_SNP [dm6]	A	C	4.519e^-5	0.728	SYNONYMOUS_CODING swa	TF binding site mE1_TFBS_chinmo
3L	15483232	3L_15483232_SNP [dm3] 3L_15490132_SNP [dm6]	A	T	4.592e^-5	0.728	INTERGENIC
2L	9487588	2L_9487588_SNP [dm3] 2L_9487588_SNP [dm6]	A	G	4.597e^-5	0.728	INTERGENIC
3L	9735039	3L_9735039_SNP [dm3] 3L_9741939_SNP [dm6]	A	T	4.604e^-5	0.728	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16202346	3L_16202346_SNP [dm3] 3L_16209246_SNP [dm6]	C	T	4.618e^-5	0.728	INTERGENIC	TF binding site mE1_TFBS_cad
3L	2645866	3L_2645866_SNP [dm3] 3L_2645866_SNP [dm6]	A	G	4.621e^-5	0.728	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	312104	3L_312104_SNP [dm3] 3L_312104_SNP [dm6]	C	T	4.679e^-5	0.728	UPSTREAM fwd INTRON fwd	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	15264242	X_15264242_SNP [dm3] X_15370209_SNP [dm6]	T	C	4.759e^-5	0.728	INTRON acj6
3L	712323	3L_712323_SNP [dm3] 3L_712323_SNP [dm6]	T	A	4.768e^-5	0.728	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	7461509	3L_7461509_SNP [dm3] 3L_7468409_SNP [dm6]	G	T	4.810e^-5	0.728	UTR_3_PRIME CG42660 & 2 others
2R	3078696	2R_3078696_SNP [dm3] 2R_7191191_SNP [dm6]	C	T	4.813e^-5	0.728	INTRON pk	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
2R	8137678	2R_8137678_SNP [dm3] 2R_12250173_SNP [dm6]	T	C	5.031e^-5	0.728	INTERGENIC
X	2311636	X_2311636_SNP [dm3] X_2417603_SNP [dm6]	A	T	5.066e^-5	0.728	INTERGENIC	TF binding site mE1_TFBS_sens
3L	12055410	3L_12055410_SNP [dm3] 3L_12062310_SNP [dm6]	C	T	5.078e^-5	0.728	INTRON rols	TF binding site BDTNP1_TFBS_da
2L	21802210	2L_21802210_SNP [dm3] 2L_21802210_SNP [dm6]	G	A	5.156e^-5	0.728	INTERGENIC
3L	14489439	3L_14489439_SNP [dm3] 3L_14496339_SNP [dm6]	A	G	5.188e^-5	0.728	INTRON bbg	TF binding site mE1_TFBS_cad
2R	3599792	2R_3599792_SNP [dm3] 2R_7712287_SNP [dm6]	A	G	5.206e^-5	0.728	UPSTREAM CG1942 DOWNSTREAM mir-4909 & 1 other INTERGENIC
2R	3079481	2R_3079481_SNP [dm3] 2R_7191976_SNP [dm6]	T	G	5.208e^-5	0.728	INTRON pk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2645600	3L_2645600_SNP [dm3] 3L_2645600_SNP [dm6]	A	T	5.212e^-5	0.728	INTRON CG1143	TF binding site mE1_TFBS_cad
X	9536658	X_9536658_SNP [dm3] X_9642625_SNP [dm6]	T	A	5.240e^-5	0.728	INTRON l_1_G0232	TF binding site mE1_TFBS_inv
3L	4817350	3L_4817350_SNP [dm3] 3L_4817350_SNP [dm6]	G	A	5.248e^-5	0.728	SYNONYMOUS_CODING Dhc64C
3L	9685669	3L_9685669_SNP [dm3] 3L_9692569_SNP [dm6]	A	G	5.298e^-5	0.728	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	10998493	2R_10998493_SNP [dm3] 2R_15110988_SNP [dm6]	A	G	5.326e^-5	0.728	INTERGENIC
3L	20187404	3L_20187404_SNP [dm3] 3L_20194304_SNP [dm6]	A	G	5.343e^-5	0.728	INTRON CG42674
2R	10998491	2R_10998491_SNP [dm3] 2R_15110986_SNP [dm6]	A	G	5.367e^-5	0.728	INTERGENIC
2L	18908808	2L_18908808_SNP [dm3] 2L_18908808_SNP [dm6]	G	T	5.374e^-5	0.728	INTERGENIC
2L	8697403	2L_8697403_SNP [dm3] 2L_8697403_SNP [dm6]	T	G	5.399e^-5	0.728	INTRON Hnf4
3L	4840793	3L_4840793_SNP [dm3] 3L_4840793_SNP [dm6]	T	G	5.451e^-5	0.73	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	9661317	3L_9661317_SNP [dm3] 3L_9668217_SNP [dm6]	A	G	5.512e^-5	0.733	INTRON fry	TF binding site mE1_TFBS_cad
3L	14919557	3L_14919557_SNP [dm3] 3L_14926457_SNP [dm6]	T	G	5.610e^-5	0.736	UTR_5_PRIME DCX-EMAP INTRON DCX-EMAP	TF binding site mE1_TFBS_cad
3L	712374	3L_712374_SNP [dm3] 3L_712374_SNP [dm6]	G	C	5.620e^-5	0.736	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	5709131	3R_5709131_SNP [dm3] 3R_9883409_SNP [dm6]	C	G	5.690e^-5	0.736	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5963561	3R_5963561_SNP [dm3] 3R_10137839_SNP [dm6]	T	C	5.721e^-5	0.736	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	14919578	3L_14919578_SNP [dm3] 3L_14926478_SNP [dm6]	A	G	5.729e^-5	0.736	UTR_5_PRIME DCX-EMAP INTRON DCX-EMAP
3L	3966395	3L_3966395_SNP [dm3] 3L_3966395_SNP [dm6]	C	T	5.938e^-5	0.751	INTERGENIC
3L	2981701	3L_2981701_SNP [dm3] 3L_2981701_SNP [dm6]	A	G	6.035e^-5	0.751	SYNONYMOUS_CODING CG2107	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9661340	3L_9661340_SNP [dm3] 3L_9668240_SNP [dm6]	C	G	6.038e^-5	0.751	INTRON fry	TF binding site mE1_TFBS_cad
2L	10482563	2L_10482563_SNP [dm3] 2L_10482563_SNP [dm6]	C	A	6.044e^-5	0.751	NON_SYNONYMOUS_CODING RluA-2 UTR_3_PRIME RluA-2 UPSTREAM Grip75	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	5886015	3L_5886015_SNP [dm3] 3L_5892915_SNP [dm6]	C	G	6.095e^-5	0.751	INTERGENIC
3L	16216199	3L_16216199_SNP [dm3] 3L_16223099_SNP [dm6]	C	T	6.108e^-5	0.751	DOWNSTREAM tRNA:CR32153 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2L	7343130	2L_7343130_SNP [dm3] 2L_7343130_SNP [dm6]	G	T	6.127e^-5	0.751	INTRON Wnt6
2R	10998501	2R_10998501_SNP [dm3] 2R_15110996_SNP [dm6]	T	G	6.231e^-5	0.759	INTERGENIC
X	17061765	X_17061765_SNP [dm3] X_17167732_SNP [dm6]	C	G	6.551e^-5	0.761	INTRON baz
X	17061777	X_17061777_SNP [dm3] X_17167744_SNP [dm6]	G	T	6.551e^-5	0.761	INTRON baz
X	17061793	X_17061793_SNP [dm3] X_17167760_SNP [dm6]	A	T	6.551e^-5	0.761	INTRON baz
X	17061814	X_17061814_DEL [dm3] X_17167781_DEL [dm6]	CAAGCTAAC	C	6.551e^-5	0.761	INTRON baz
X	17948777	X_17948777_SNP [dm3] X_18054744_SNP [dm6]	G	A	6.588e^-5	0.761	INTRON Sh
3L	1103424	3L_1103424_DEL [dm3] 3L_1103424_DEL [dm6]	CC	C	6.608e^-5	0.761	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	378373	2L_378373_SNP [dm3] 2L_378373_SNP [dm6]	A	T	6.650e^-5	0.761	UTR_5_PRIME al	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	18930447	2L_18930447_SNP [dm3] 2L_18930447_SNP [dm6]	G	A	6.659e^-5	0.761	INTRON ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	711857	3L_711857_SNP [dm3] 3L_711857_SNP [dm6]	A	C	6.697e^-5	0.761	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	712226	3L_712226_SNP [dm3] 3L_712226_SNP [dm6]	C	A	6.697e^-5	0.761	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	8388326	3R_8388326_SNP [dm3] 3R_12562604_SNP [dm6]	C	T	6.740e^-5	0.761	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
2L	13211544	2L_13211544_SNP [dm3] 2L_13211544_SNP [dm6]	T	C	6.869e^-5	0.761	NON_SYNONYMOUS_CODING CG15482 DOWNSTREAM Pect & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14816333	3L_14816333_SNP [dm3] 3L_14823233_SNP [dm6]	G	A	6.870e^-5	0.761	INTRON CG17839
3R	27128046	3R_27128046_SNP [dm3] 3R_31302324_SNP [dm6]	C	T	6.916e^-5	0.761	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_inv
3L	536533	3L_536533_SNP [dm3] 3L_536533_SNP [dm6]	A	G	7.030e^-5	0.761	INTRON klar
2L	9463941	2L_9463941_SNP [dm3] 2L_9463941_SNP [dm6]	T	C	7.043e^-5	0.761	UTR_3_PRIME numb DOWNSTREAM numb
2R	11576437	2R_11576437_SNP [dm3] 2R_15688932_SNP [dm6]	T	C	7.058e^-5	0.761	NON_SYNONYMOUS_CODING Cep89 UPSTREAM CG30090	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	17952258	X_17952258_SNP [dm3] X_18058225_SNP [dm6]	C	A	7.078e^-5	0.761	INTRON Sh
3L	13310290	3L_13310290_SNP [dm3] 3L_13317190_SNP [dm6]	T	G	7.088e^-5	0.761	INTERGENIC
X	11409403	X_11409403_SNP [dm3] X_11515370_SNP [dm6]	A	T	7.093e^-5	0.761	INTRON Drak	TF binding site mE1_TFBS_Kr
3L	4545922	3L_4545922_SNP [dm3] 3L_4545922_SNP [dm6]	G	A	7.099e^-5	0.761	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	24353994	3R_24353994_SNP [dm3] 3R_28528272_SNP [dm6]	G	A	7.225e^-5	0.768	NON_SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	712501	3L_712501_SNP [dm3] 3L_712501_SNP [dm6]	C	G	7.298e^-5	0.768	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	8518986	3L_8518986_SNP [dm3] 3L_8525886_SNP [dm6]	A	C	7.402e^-5	0.768	INTRON foi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	11804667	2R_11804667_SNP [dm3] 2R_15917162_SNP [dm6]	T	G	7.538e^-5	0.768	DOWNSTREAM CR44373 INTRON sli	TF binding site mE1_TFBS_cad
2L	16840396	2L_16840396_SNP [dm3] 2L_16840396_SNP [dm6]	T	C	7.573e^-5	0.768	UTR_3_PRIME SclA & 1 other INTRON SclA
2R	11340150	2R_11340150_SNP [dm3] 2R_15452645_SNP [dm6]	A	T	7.597e^-5	0.768	INTRON CG43729
2L	5758264	2L_5758264_SNP [dm3] 2L_5758264_SNP [dm6]	A	C	7.598e^-5	0.768	INTRON CG11030	TF binding site mE1_TFBS_cad
3L	11168307	3L_11168307_SNP [dm3] 3L_11175207_SNP [dm6]	T	A	7.607e^-5	0.768	INTRON CG14142
3R	10436798	3R_10436798_SNP [dm3] 3R_14611076_SNP [dm6]	T	C	7.695e^-5	0.768	INTRON CG14853
3L	13554079	3L_13554079_SNP [dm3] 3L_13560979_SNP [dm6]	G	A	7.707e^-5	0.768	INTRON bru-3
3R	24132403	3R_24132403_SNP [dm3] 3R_28306681_SNP [dm6]	A	C	7.745e^-5	0.768	INTERGENIC	TF binding site mE1_TFBS_HSA
X	14842540	X_14842540_SNP [dm3] X_14948507_SNP [dm6]	T	C	7.757e^-5	0.768	INTRON pdgy	TF binding site mE1_TFBS_HSA
X	17952259	X_17952259_SNP [dm3] X_18058226_SNP [dm6]	T	C	7.824e^-5	0.768	INTRON Sh
2L	9053262	2L_9053262_SNP [dm3] 2L_9053262_SNP [dm6]	T	A	7.884e^-5	0.768	INTRON CG31708
3L	13549841	3L_13549841_SNP [dm3] 3L_13556741_SNP [dm6]	A	G	7.884e^-5	0.768	INTRON bru-3
3L	3680402	3L_3680402_SNP [dm3] 3L_3680402_SNP [dm6]	T	C	8.017e^-5	0.768	INTERGENIC
X	12850971	X_12850971_SNP [dm3] X_12956938_SNP [dm6]	G	T	8.146e^-5	0.768	INTRON hec
2L	17333598	2L_17333598_SNP [dm3] 2L_17333598_SNP [dm6]	G	A	8.228e^-5	0.768	INTERGENIC
2R	3077080	2R_3077080_INS [dm3] 2R_7189575_INS [dm6]	G	GGCAG	8.285e^-5	0.768	INTRON pk
3L	14561076	3L_14561076_SNP [dm3] 3L_14567976_SNP [dm6]	T	C	8.326e^-5	0.768	SYNONYMOUS_CODING CG42758
3L	10702270	3L_10702270_SNP [dm3] 3L_10709170_SNP [dm6]	C	A	8.350e^-5	0.768	INTERGENIC
2L	8447278	2L_8447278_SNP [dm3] 2L_8447278_SNP [dm6]	T	G	8.368e^-5	0.768	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	12077068	3R_12077068_SNP [dm3] 3R_16251346_SNP [dm6]	G	A	8.407e^-5	0.768	INTRON tara	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9685627	3L_9685627_SNP [dm3] 3L_9692527_SNP [dm6]	A	G	8.425e^-5	0.768	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	9685634	3L_9685634_SNP [dm3] 3L_9692534_SNP [dm6]	C	T	8.425e^-5	0.768	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	9686029	3L_9686029_SNP [dm3] 3L_9692929_SNP [dm6]	A	T	8.425e^-5	0.768	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
3L	9686121	3L_9686121_SNP [dm3] 3L_9693021_SNP [dm6]	T	A	8.425e^-5	0.768	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
X	3136990	X_3136990_SNP [dm3] X_3242957_SNP [dm6]	A	G	8.436e^-5	0.768	UPSTREAM ng3 DOWNSTREAM ng1 & 1 other INTRON dnc
3L	1108128	3L_1108128_SNP [dm3] 3L_1108128_SNP [dm6]	G	T	8.515e^-5	0.768	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	16325368	2R_16325368_SNP [dm3] 2R_20437863_SNP [dm6]	C	A	8.569e^-5	0.768	INTRON CG12484
2L	6463898	2L_6463898_SNP [dm3] 2L_6463898_SNP [dm6]	A	T	8.609e^-5	0.768	UTR_5_PRIME CG16947	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	14816170	3L_14816170_SNP [dm3] 3L_14823070_SNP [dm6]	A	T	8.674e^-5	0.768	INTRON CG17839
3R	11666483	3R_11666483_SNP [dm3] 3R_15840761_SNP [dm6]	G	C	8.675e^-5	0.768	SYNONYMOUS_CODING spn-E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	5121954	3R_5121954_SNP [dm3] 3R_9296232_SNP [dm6]	A	G	8.876e^-5	0.768	INTRON CG8861
X	17952263	X_17952263_SNP [dm3] X_18058230_SNP [dm6]	A	G	8.879e^-5	0.768	INTRON Sh
3L	10756244	3L_10756244_SNP [dm3] 3L_10763144_SNP [dm6]	A	G	8.935e^-5	0.768	INTERGENIC
X	20262202	X_20262202_SNP [dm3] X_20391175_SNP [dm6]	C	A	8.954e^-5	0.768	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2591036	3L_2591036_SNP [dm3] 3L_2591036_SNP [dm6]	C	A	8.974e^-5	0.768	UTR_5_PRIME dos INTRON dos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Stat92E
2R	3078631	2R_3078631_DEL [dm3] 2R_7191126_DEL [dm6]	TACT	T	9.014e^-5	0.768	INTRON pk	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3L	4152861	3L_4152861_SNP [dm3] 3L_4152861_SNP [dm6]	G	A	9.029e^-5	0.768	DOWNSTREAM CG1299 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11573868	2R_11573868_SNP [dm3] 2R_15686363_SNP [dm6]	C	T	9.030e^-5	0.768	SYNONYMOUS_CODING Ranbp11 UPSTREAM CG30082	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2L	16239657	2L_16239657_SNP [dm3] 2L_16239657_SNP [dm6]	C	T	9.066e^-5	0.768	INTRON CG42817
3R	25588806	3R_25588806_SNP [dm3] 3R_29763084_SNP [dm6]	A	G	9.085e^-5	0.768	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	21906167	2L_21906167_SNP [dm3] 2L_21906167_SNP [dm6]	A	T	9.089e^-5	0.768	UPSTREAM CG1428 INTERGENIC
2L	2922161	2L_2922161_SNP [dm3] 2L_2922161_SNP [dm6]	T	A	9.100e^-5	0.768	INTRON lilli
3L	9686313	3L_9686313_SNP [dm3] 3L_9693213_SNP [dm6]	C	A	9.144e^-5	0.768	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
X	21081580	X_21081580_SNP [dm3] X_21210553_SNP [dm6]	A	G	9.211e^-5	0.768	INTRON CG32521
3L	14925605	3L_14925605_SNP [dm3] 3L_14932505_SNP [dm6]	T	G	9.262e^-5	0.768	INTRON DCX-EMAP
3L	14376180	3L_14376180_SNP [dm3] 3L_14383080_SNP [dm6]	C	T	9.324e^-5	0.768	UTR_3_PRIME CG43120
X	9536672	X_9536672_SNP [dm3] X_9642639_SNP [dm6]	G	T	9.408e^-5	0.768	INTRON l_1_G0232	TF binding site mE1_TFBS_inv
2L	5758251	2L_5758251_SNP [dm3] 2L_5758251_SNP [dm6]	C	A	9.460e^-5	0.768	INTRON CG11030
2R	8137696	2R_8137696_SNP [dm3] 2R_12250191_SNP [dm6]	A	T	9.486e^-5	0.768	INTERGENIC
3R	13139524	3R_13139524_SNP [dm3] 3R_17313802_SNP [dm6]	G	T	9.491e^-5	0.768	INTERGENIC
2L	9430498	2L_9430498_SNP [dm3] 2L_9430498_SNP [dm6]	T	A	9.523e^-5	0.768	UPSTREAM FucTB & 1 other INTRON FucTB
3R	6253185	3R_6253185_SNP [dm3] 3R_10427463_SNP [dm6]	G	C	9.543e^-5	0.768	INTERGENIC
2L	9506599	2L_9506599_SNP [dm3] 2L_9506599_SNP [dm6]	T	A	9.549e^-5	0.768	INTRON CG33298
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	9.561e^-5	0.768	EXON CR44950
3L	16896018	3L_16896018_SNP [dm3] 3L_16902918_SNP [dm6]	G	A	9.589e^-5	0.768	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo
3L	11525805	3L_11525805_SNP [dm3] 3L_11532705_SNP [dm6]	G	A	9.631e^-5	0.768	INTRON Mob2
X	4093939	X_4093939_SNP [dm3] X_4199906_SNP [dm6]	A	C	9.692e^-5	0.768	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	7622623	X_7622623_SNP [dm3] X_7728590_SNP [dm6]	G	A	9.703e^-5	0.768	UPSTREAM CG12155 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	15413677	X_15413677_SNP [dm3] X_15519644_SNP [dm6]	C	G	9.710e^-5	0.768	INTRON Ac13E
3L	15483252	3L_15483252_SNP [dm3] 3L_15490152_SNP [dm6]	G	T	9.967e^-5	0.768	INTERGENIC
2R	9147155	2R_9147155_SNP [dm3] 2R_13259650_SNP [dm6]	A	T	1.001e^-4	0.768	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2L	3291545	2L_3291545_SNP [dm3] 2L_3291545_SNP [dm6]	G	T	1.004e^-4	0.768	SYNONYMOUS_CODING CG9664 UTR_3_PRIME CG9664	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	3077646	2R_3077646_SNP [dm3] 2R_7190141_SNP [dm6]	T	G	1.030e^-4	0.768	INTRON pk
X	8156849	X_8156849_SNP [dm3] X_8262816_SNP [dm6]	T	C	1.034e^-4	0.768	INTRON CG1632	TF binding site BDTNP1_TFBS_da
2L	2669602	2L_2669602_SNP [dm3] 2L_2669602_SNP [dm6]	G	T	1.038e^-4	0.768	UPSTREAM Gr23a INTERGENIC
3L	17217720	3L_17217720_SNP [dm3] 3L_17224620_SNP [dm6]	A	G	1.042e^-4	0.768	INTRON Rbp6
3L	742989	3L_742989_SNP [dm3] 3L_742989_SNP [dm6]	C	A	1.043e^-4	0.768	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	6218645	3R_6218645_SNP [dm3] 3R_10392923_SNP [dm6]	A	G	1.044e^-4	0.768	INTRON cwo
3R	20231859	3R_20231859_SNP [dm3] 3R_24406137_SNP [dm6]	A	C	1.063e^-4	0.768	INTRON nAChRalpha1
3R	9959340	3R_9959340_SNP [dm3] 3R_14133618_SNP [dm6]	C	T	1.065e^-4	0.768	INTERGENIC
2L	22297776	2L_22297776_SNP [dm3] 2L_22297776_SNP [dm6]	G	A	1.067e^-4	0.768	INTERGENIC	transposable element FlyBase
3L	712343	3L_712343_SNP [dm3] 3L_712343_SNP [dm6]	A	C	1.073e^-4	0.768	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	9147422	2R_9147422_SNP [dm3] 2R_13259917_SNP [dm6]	A	T	1.086e^-4	0.768	UPSTREAM CG42319 INTERGENIC
3R	22784279	3R_22784279_SNP [dm3] 3R_26958557_SNP [dm6]	C	T	1.090e^-4	0.768	UPSTREAM CG6330 INTERGENIC
3L	743080	3L_743080_SNP [dm3] 3L_743080_SNP [dm6]	T	A	1.094e^-4	0.768	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	9661315	3L_9661315_SNP [dm3] 3L_9668215_SNP [dm6]	A	G	1.098e^-4	0.768	INTRON fry	TF binding site mE1_TFBS_cad
2L	16239646	2L_16239646_SNP [dm3] 2L_16239646_SNP [dm6]	T	C	1.100e^-4	0.768	INTRON CG42817
3L	11168356	3L_11168356_INS [dm3] 3L_11175256_INS [dm6]	G	TTATA	1.113e^-4	0.768	INTRON CG14142	TF binding site mE1_TFBS_cad
3L	11168354	3L_11168354_SNP [dm3] 3L_11175254_SNP [dm6]	G	A	1.121e^-4	0.768	INTRON CG14142	TF binding site mE1_TFBS_cad
3R	6299585	3R_6299585_SNP [dm3] 3R_10473863_SNP [dm6]	G	T	1.127e^-4	0.768	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	7619193	X_7619193_SNP [dm3] X_7725160_SNP [dm6]	C	T	1.129e^-4	0.768	SYNONYMOUS_CODING Hira DOWNSTREAM NELF-B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14395022	3R_14395022_SNP [dm3] 3R_18569300_SNP [dm6]	G	A	1.129e^-4	0.768	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
X	20262200	X_20262200_SNP [dm3] X_20391173_SNP [dm6]	G	A	1.141e^-4	0.768	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5122899	3L_5122899_SNP [dm3] 3L_5129799_SNP [dm6]	T	A	1.144e^-4	0.768	SYNONYMOUS_CODING CG4597
3R	5121977	3R_5121977_SNP [dm3] 3R_9296255_SNP [dm6]	A	T	1.154e^-4	0.768	INTRON CG8861
X	13998264	X_13998264_SNP [dm3] X_14104231_SNP [dm6]	C	G	1.157e^-4	0.768	UPSTREAM tRNA:S4:12Ee & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12971257	3R_12971257_SNP [dm3] 3R_17145535_SNP [dm6]	A	C	1.157e^-4	0.768	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3R	12971260	3R_12971260_DEL [dm3] 3R_17145538_DEL [dm6]	AGGTAAGCATCCTA...	G	1.157e^-4	0.768	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
2R	16864005	2R_16864005_SNP [dm3] 2R_20976500_SNP [dm6]	A	T	1.158e^-4	0.768	UPSTREAM CG9344 INTRON CG34115	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	13739800	2R_13739800_SNP [dm3] 2R_17852295_SNP [dm6]	G	T	1.159e^-4	0.768	UPSTREAM CG30323 INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21851919	2L_21851919_INS [dm3] 2L_21851919_INS [dm6]	T	TTCT	1.162e^-4	0.768	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	16289150	2R_16289150_SNP [dm3] 2R_20401645_SNP [dm6]	G	A	1.167e^-4	0.768	INTERGENIC
3L	3090995	3L_3090995_SNP [dm3] 3L_3090995_SNP [dm6]	C	T	1.167e^-4	0.768	UTR_3_PRIME Cht7 DOWNSTREAM CG11486 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	9463889	2L_9463889_DEL [dm3] 2L_9463889_DEL [dm6]	CA	G	1.175e^-4	0.768	UTR_3_PRIME numb DOWNSTREAM numb
2R	20191493	2R_20191493_SNP [dm3] 2R_24303970_SNP [dm6]	G	A	1.175e^-4	0.768	INTERGENIC	regulatory region REDfly_CRMs
2L	19825351	2L_19825351_SNP [dm3] 2L_19825351_SNP [dm6]	A	G	1.187e^-4	0.768	INTRON sick
3L	16824644	3L_16824644_SNP [dm3] 3L_16831544_SNP [dm6]	A	G	1.190e^-4	0.768	INTERGENIC	TF binding site mE1_TFBS_inv
2L	21906150	2L_21906150_DEL [dm3] 2L_21906150_DEL [dm6]	CACCTCTG	C	1.191e^-4	0.768	UPSTREAM CG1428 INTERGENIC
X	4093952	X_4093952_SNP [dm3] X_4199919_SNP [dm6]	A	T	1.193e^-4	0.768	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	16983394	3L_16983394_SNP [dm3] 3L_16990294_SNP [dm6]	C	A	1.202e^-4	0.768	INTRON Exn
2L	16759323	2L_16759323_SNP [dm3] 2L_16759323_SNP [dm6]	C	T	1.202e^-4	0.768	INTRON ppk17
3L	17456726	3L_17456726_SNP [dm3] 3L_17463626_SNP [dm6]	A	G	1.209e^-4	0.768	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	3079950	2R_3079950_SNP [dm3] 2R_7192445_SNP [dm6]	T	G	1.217e^-4	0.768	INTRON pk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	16619019	2L_16619019_SNP [dm3] 2L_16619019_SNP [dm6]	T	A	1.218e^-4	0.768	INTRON CG42389	TF binding site BDTNP1_TFBS_dl
3L	7461504	3L_7461504_SNP [dm3] 3L_7468404_SNP [dm6]	A	C	1.222e^-4	0.768	UTR_3_PRIME CG42660 & 2 others
3L	4737892	3L_4737892_SNP [dm3] 3L_4737892_SNP [dm6]	T	C	1.228e^-4	0.768	INTRON RhoGEF64C
2L	606452	2L_606452_SNP [dm3] 2L_606452_SNP [dm6]	C	T	1.232e^-4	0.768	DOWNSTREAM CR43648 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8156894	X_8156894_INS [dm3] X_8262861_INS [dm6]	T	TTCCACGCTCCGAACCAAAT...	1.234e^-4	0.768	INTRON CG1632	TF binding site BDTNP1_TFBS_da
X	11320928	X_11320928_MNP [dm3] X_11426895_MNP [dm6]	GCGG	TTTT	1.234e^-4	0.768	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11320932	X_11320932_INS [dm3] X_11426899_INS [dm6]	A	AAT	1.234e^-4	0.768	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17289541	2L_17289541_SNP [dm3] 2L_17289541_SNP [dm6]	C	T	1.239e^-4	0.768	INTERGENIC
3R	24362223	3R_24362223_SNP [dm3] 3R_28536501_SNP [dm6]	C	T	1.241e^-4	0.768	INTRON Ppn
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	1.243e^-4	0.768	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9510193	3L_9510193_SNP [dm3] 3L_9517093_SNP [dm6]	C	A	1.243e^-4	0.768	INTRON CG33700
2R	9940463	2R_9940463_SNP [dm3] 2R_14052958_SNP [dm6]	G	C	1.251e^-4	0.768	INTRON mam
2R	10998512	2R_10998512_SNP [dm3] 2R_15111007_SNP [dm6]	G	T	1.252e^-4	0.768	INTERGENIC
2L	21906159	2L_21906159_DEL [dm3] 2L_21906159_DEL [dm6]	TCGACA	T	1.253e^-4	0.768	UPSTREAM CG1428 INTERGENIC
2L	19896738	2L_19896738_SNP [dm3] 2L_19896738_SNP [dm6]	T	A	1.260e^-4	0.768	INTRON sick
3L	3143873	3L_3143873_SNP [dm3] 3L_3143873_SNP [dm6]	T	A	1.261e^-4	0.768	UTR_5_PRIME CG1291 UPSTREAM CG11537	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	12264143	X_12264143_SNP [dm3] X_12370110_SNP [dm6]	C	A	1.263e^-4	0.768	INTERGENIC
2L	9506598	2L_9506598_SNP [dm3] 2L_9506598_SNP [dm6]	C	A	1.265e^-4	0.768	INTRON CG33298
2L	8447795	2L_8447795_SNP [dm3] 2L_8447795_SNP [dm6]	C	T	1.271e^-4	0.768	SYNONYMOUS_CODING U26 UTR_3_PRIME U26
X	17952266	X_17952266_SNP [dm3] X_18058233_SNP [dm6]	G	T	1.279e^-4	0.768	INTRON Sh
3R	9881211	3R_9881211_SNP [dm3] 3R_14055489_SNP [dm6]	A	C	1.285e^-4	0.768	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1570824	3L_1570824_SNP [dm3] 3L_1570824_SNP [dm6]	T	C	1.288e^-4	0.768	INTRON CG12004	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	7622443	X_7622443_SNP [dm3] X_7728410_SNP [dm6]	G	A	1.291e^-4	0.768	UPSTREAM CG12155 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4842259	3L_4842259_SNP [dm3] 3L_4842259_SNP [dm6]	T	C	1.291e^-4	0.768	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	14835275	3L_14835275_INS [dm3] 3L_14842175_INS [dm6]	T	TTGCAA	1.294e^-4	0.768	INTRON CG17839
3L	7467554	3L_7467554_SNP [dm3] 3L_7474454_SNP [dm6]	G	A	1.298e^-4	0.768	INTERGENIC
2L	8448106	2L_8448106_SNP [dm3] 2L_8448106_SNP [dm6]	G	A	1.301e^-4	0.768	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6489864	X_6489864_SNP [dm3] X_6595831_SNP [dm6]	G	C	1.303e^-4	0.768	UTR_3_PRIME Pat1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5903120	2L_5903120_SNP [dm3] 2L_5903120_SNP [dm6]	C	T	1.310e^-4	0.768	DOWNSTREAM CG9021 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26671686	3R_26671686_SNP [dm3] 3R_30845964_SNP [dm6]	T	A	1.316e^-4	0.768	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	14929523	3L_14929523_SNP [dm3] 3L_14936423_SNP [dm6]	T	A	1.321e^-4	0.768	INTRON DCX-EMAP
2L	2279895	2L_2279895_SNP [dm3] 2L_2279895_SNP [dm6]	G	A	1.323e^-4	0.768	UPSTREAM CR43753 INTERGENIC
3L	743084	3L_743084_INS [dm3] 3L_743084_INS [dm6]	T	TT	1.332e^-4	0.768	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	10085825	2L_10085825_SNP [dm3] 2L_10085825_SNP [dm6]	C	T	1.334e^-4	0.768	INTRON CG44153
3L	2645081	3L_2645081_SNP [dm3] 3L_2645081_SNP [dm6]	A	G	1.336e^-4	0.768	UPSTREAM CG1143 INTERGENIC
3L	11508729	3L_11508729_DEL [dm3] 3L_11515629_DEL [dm6]	CCC	C	1.337e^-4	0.768	INTRON CG7512
2R	18231986	2R_18231986_SNP [dm3] 2R_22344481_SNP [dm6]	G	A	1.339e^-4	0.768	INTRON Liprin-gamma
3L	13272954	3L_13272954_SNP [dm3] 3L_13279854_SNP [dm6]	A	T	1.339e^-4	0.768	DOWNSTREAM caps & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	6643082	X_6643082_INS [dm3] X_6749049_INS [dm6]	A	AACAGAGA	1.341e^-4	0.768	INTRON CG14439
3R	16890386	3R_16890386_SNP [dm3] 3R_21064664_SNP [dm6]	A	G	1.343e^-4	0.768	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
X	8222268	X_8222268_SNP [dm3] X_8328235_SNP [dm6]	A	T	1.344e^-4	0.768	INTRON nAChRalpha3
3L	16983298	3L_16983298_INS [dm3] 3L_16990198_INS [dm6]	A	AG	1.348e^-4	0.768	INTRON Exn
3R	22778961	3R_22778961_SNP [dm3] 3R_26953239_SNP [dm6]	G	A	1.349e^-4	0.768	UTR_5_PRIME CG6330 INTRON CG6330	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10837352	2R_10837352_SNP [dm3] 2R_14949847_SNP [dm6]	A	G	1.349e^-4	0.768	UPSTREAM aPKC INTRON aPKC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	10969436	3L_10969436_SNP [dm3] 3L_10976336_SNP [dm6]	A	T	1.351e^-4	0.768	INTERGENIC	TF binding site mE1_TFBS_cad
3L	10699904	3L_10699904_INS [dm3] 3L_10706804_INS [dm6]	A	AA	1.357e^-4	0.768	INTERGENIC
2L	18328109	2L_18328109_SNP [dm3] 2L_18328109_SNP [dm6]	C	G	1.358e^-4	0.768	INTRON Fas3
3L	14389469	3L_14389469_SNP [dm3] 3L_14396369_SNP [dm6]	C	G	1.362e^-4	0.768	INTERGENIC
3R	22141451	3R_22141451_SNP [dm3] 3R_26315729_SNP [dm6]	C	T	1.364e^-4	0.768	INTERGENIC
3R	25765336	3R_25765336_SNP [dm3] 3R_29939614_SNP [dm6]	T	C	1.366e^-4	0.768	SYNONYMOUS_CODING CG15523
2R	12267152	2R_12267152_SNP [dm3] 2R_16379647_SNP [dm6]	T	A	1.367e^-4	0.768	UPSTREAM CG43187 EXON CR45316 & 1 other
3L	8532578	3L_8532578_SNP [dm3] 3L_8539478_SNP [dm6]	A	C	1.367e^-4	0.768	INTERGENIC
3R	21341350	3R_21341350_SNP [dm3] 3R_25515628_SNP [dm6]	G	T	1.368e^-4	0.768	UPSTREAM msi INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	413912	3L_413912_SNP [dm3] 3L_413912_SNP [dm6]	C	T	1.380e^-4	0.772	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	14561228	3L_14561228_SNP [dm3] 3L_14568128_SNP [dm6]	T	G	1.393e^-4	0.773	UTR_3_PRIME CG42758
3R	12970762	3R_12970762_SNP [dm3] 3R_17145040_SNP [dm6]	A	T	1.395e^-4	0.773	UTR_3_PRIME m-cup DOWNSTREAM m-cup
3L	7467600	3L_7467600_SNP [dm3] 3L_7474500_SNP [dm6]	T	C	1.397e^-4	0.773	INTERGENIC
2L	21896969	2L_21896969_SNP [dm3] 2L_21896969_SNP [dm6]	A	C	1.399e^-4	0.773	SYNONYMOUS_CODING CG11629	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9103236	2L_9103236_SNP [dm3] 2L_9103236_SNP [dm6]	C	T	1.405e^-4	0.775	INTERGENIC
2R	15903063	2R_15903063_SNP [dm3] 2R_20015558_SNP [dm6]	A	C	1.413e^-4	0.775	DOWNSTREAM CR44629 & 1 other INTERGENIC
X	7110481	X_7110481_SNP [dm3] X_7216448_SNP [dm6]	T	C	1.417e^-4	0.775	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_twi
2L	8448676	2L_8448676_SNP [dm3] 2L_8448676_SNP [dm6]	G	T	1.418e^-4	0.775	SYNONYMOUS_CODING U26
X	7620280	X_7620280_SNP [dm3] X_7726247_SNP [dm6]	G	T	1.427e^-4	0.776	UTR_3_PRIME NELF-B DOWNSTREAM Hira	TF binding site mE1_TFBS_chinmo
X	1196886	X_1196886_SNP [dm3] X_1302853_SNP [dm6]	T	C	1.427e^-4	0.776	INTRON DAAM	TF binding site mE1_TFBS_chinmo
X	9536660	X_9536660_SNP [dm3] X_9642627_SNP [dm6]	T	A	1.451e^-4	0.786	INTRON l_1_G0232	TF binding site mE1_TFBS_inv
X	7613485	X_7613485_SNP [dm3] X_7719452_SNP [dm6]	G	A	1.468e^-4	0.791	INTERGENIC
3L	743033	3L_743033_SNP [dm3] 3L_743033_SNP [dm6]	C	T	1.476e^-4	0.791	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	5129982	3R_5129982_SNP [dm3] 3R_9304260_SNP [dm6]	C	G	1.481e^-4	0.791	INTRON CG8861
3R	14293780	3R_14293780_DEL [dm3] 3R_18468058_DEL [dm6]	TTTT	T	1.482e^-4	0.791	INTRON fru
3R	21876370	3R_21876370_SNP [dm3] 3R_26050648_SNP [dm6]	T	G	1.484e^-4	0.791	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25323777	3R_25323777_SNP [dm3] 3R_29498055_SNP [dm6]	A	G	1.488e^-4	0.791	DOWNSTREAM Trc8 INTRON CG2010	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	1.491e^-4	0.791	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
2L	21779550	2L_21779550_INS [dm3] 2L_21779550_INS [dm6]	C	CTATTCTTATTATC...	1.494e^-4	0.791	INTRON CG31612
3R	6105630	3R_6105630_SNP [dm3] 3R_10279908_SNP [dm6]	T	A	1.498e^-4	0.791	INTRON CG43143
2R	17028512	2R_17028512_SNP [dm3] 2R_21141007_SNP [dm6]	A	C	1.504e^-4	0.792	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	14293806	3R_14293806_SNP [dm3] 3R_18468084_SNP [dm6]	G	A	1.509e^-4	0.792	INTRON fru
2L	5434894	2L_5434894_SNP [dm3] 2L_5434894_SNP [dm6]	T	G	1.528e^-4	0.8	UPSTREAM CR43715 DOWNSTREAM CR31647 INTERGENIC	TF binding site mE1_TFBS_Kr
3R	6253280	3R_6253280_SNP [dm3] 3R_10427558_SNP [dm6]	T	A	1.532e^-4	0.8	INTERGENIC
3R	10435018	3R_10435018_SNP [dm3] 3R_14609296_SNP [dm6]	T	G	1.540e^-4	0.801	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2863927	2L_2863927_SNP [dm3] 2L_2863927_SNP [dm6]	C	T	1.543e^-4	0.801	INTRON CG2991	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8450856	2L_8450856_SNP [dm3] 2L_8450856_SNP [dm6]	A	C	1.553e^-4	0.801	SYNONYMOUS_CODING fu12
3L	17193388	3L_17193388_SNP [dm3] 3L_17200288_SNP [dm6]	T	A	1.558e^-4	0.801	INTRON Rbp6
3R	9817342	3R_9817342_INS [dm3] 3R_13991620_INS [dm6]	C	CCATG	1.560e^-4	0.801	INTRON rdx
3R	9817346	3R_9817346_INS [dm3] 3R_13991624_INS [dm6]	T	TGATT	1.560e^-4	0.801	INTRON rdx
X	18463732	X_18463732_SNP [dm3] X_18569699_SNP [dm6]	A	G	1.578e^-4	0.808	INTRON Bx	TF binding site BDTNP1_TFBS_da
2L	7025296	2L_7025296_SNP [dm3] 2L_7025296_SNP [dm6]	C	A	1.584e^-4	0.809	NON_SYNONYMOUS_CODING CG31908	TF binding site mE1_TFBS_cad
X	21160844	X_21160844_SNP [dm3] X_21289817_SNP [dm6]	G	C	1.599e^-4	0.811	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17946678	X_17946678_SNP [dm3] X_18052645_SNP [dm6]	G	T	1.602e^-4	0.811	INTRON Sh	TF binding site BDTNP1_TFBS_dl
3L	15483280	3L_15483280_SNP [dm3] 3L_15490180_SNP [dm6]	T	C	1.602e^-4	0.811	INTERGENIC
2L	357751	2L_357751_SNP [dm3] 2L_357751_SNP [dm6]	G	C	1.605e^-4	0.811	SPLICE_SITE_REGION Ent1 UTR_5_PRIME Ent1 DOWNSTREAM CR45367 INTRON Ent1 EXON CR45366	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	8696998	2L_8696998_SNP [dm3] 2L_8696998_SNP [dm6]	C	G	1.622e^-4	0.817	INTRON Hnf4	TF binding site mE1_TFBS_cnc
2R	16425872	2R_16425872_SNP [dm3] 2R_20538367_SNP [dm6]	T	C	1.626e^-4	0.817	DOWNSTREAM CG13427 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
3L	2683655	3L_2683655_SNP [dm3] 3L_2683655_SNP [dm6]	A	G	1.632e^-4	0.818	INTRON Fife
3L	14835265	3L_14835265_SNP [dm3] 3L_14842165_SNP [dm6]	T	C	1.638e^-4	0.819	INTRON CG17839
2L	8447265	2L_8447265_SNP [dm3] 2L_8447265_SNP [dm6]	A	G	1.649e^-4	0.82	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	8592217	3L_8592217_SNP [dm3] 3L_8599117_SNP [dm6]	G	C	1.651e^-4	0.82	UTR_3_PRIME CG43078 DOWNSTREAM Nelf-E
3L	19449444	3L_19449444_SNP [dm3] 3L_19456344_SNP [dm6]	C	G	1.654e^-4	0.82	DOWNSTREAM CR45434 INTERGENIC
3L	9508876	3L_9508876_SNP [dm3] 3L_9515776_SNP [dm6]	G	T	1.658e^-4	0.82	INTRON CG33700
2L	6791732	2L_6791732_SNP [dm3] 2L_6791732_SNP [dm6]	G	T	1.665e^-4	0.821	SYNONYMOUS_CODING nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	20946369	2R_20946369_SNP [dm3] 2R_25058846_SNP [dm6]	C	T	1.680e^-4	0.821	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3R	7278942	3R_7278942_SNP [dm3] 3R_11453220_SNP [dm6]	A	G	1.681e^-4	0.821	SYNONYMOUS_CODING PGRP-LB INTRON CG17230	TF binding site mE1_TFBS_chinmo
2L	19822550	2L_19822550_SNP [dm3] 2L_19822550_SNP [dm6]	A	C	1.689e^-4	0.821	INTRON sick
2L	19841437	2L_19841437_SNP [dm3] 2L_19841437_SNP [dm6]	G	A	1.690e^-4	0.821	INTRON sick
3L	19516540	3L_19516540_SNP [dm3] 3L_19523440_SNP [dm6]	G	A	1.692e^-4	0.821	INTRON Cpr76Bc
2R	16289319	2R_16289319_SNP [dm3] 2R_20401814_SNP [dm6]	C	T	1.695e^-4	0.821	INTERGENIC
2R	9147218	2R_9147218_SNP [dm3] 2R_13259713_SNP [dm6]	T	A	1.696e^-4	0.821	UPSTREAM CG42319 INTERGENIC
X	11320954	X_11320954_SNP [dm3] X_11426921_SNP [dm6]	A	T	1.702e^-4	0.822	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4313161	3R_4313161_SNP [dm3] 3R_8487439_SNP [dm6]	G	A	1.709e^-4	0.822	INTERGENIC
3R	10306571	3R_10306571_SNP [dm3] 3R_14480849_SNP [dm6]	T	G	1.740e^-4	0.822	UTR_5_PRIME cv-c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	15728441	3L_15728441_SNP [dm3] 3L_15735341_SNP [dm6]	C	T	1.753e^-4	0.822	INTERGENIC
2L	8698764	2L_8698764_SNP [dm3] 2L_8698764_SNP [dm6]	A	G	1.764e^-4	0.822	INTRON Hnf4
X	9287766	X_9287766_SNP [dm3] X_9393733_SNP [dm6]	T	C	1.768e^-4	0.822	INTRON mgl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4737859	3L_4737859_SNP [dm3] 3L_4737859_SNP [dm6]	A	G	1.773e^-4	0.822	INTRON RhoGEF64C
3L	15488966	3L_15488966_SNP [dm3] 3L_15495866_SNP [dm6]	G	T	1.775e^-4	0.822	UPSTREAM CG12355 & 1 other INTERGENIC
2L	16239654	2L_16239654_SNP [dm3] 2L_16239654_SNP [dm6]	T	C	1.785e^-4	0.822	INTRON CG42817
X	7617819	X_7617819_SNP [dm3] X_7723786_SNP [dm6]	C	A	1.793e^-4	0.822	SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_HSA
3L	16867402	3L_16867402_SNP [dm3] 3L_16874302_SNP [dm6]	C	A	1.800e^-4	0.822	INTRON Lmpt
2L	21906528	2L_21906528_SNP [dm3] 2L_21906528_SNP [dm6]	A	G	1.803e^-4	0.822	NON_SYNONYMOUS_CODING CG1428	TF binding site mE1_TFBS_cad
2L	21802262	2L_21802262_SNP [dm3] 2L_21802262_SNP [dm6]	A	G	1.807e^-4	0.822	INTERGENIC
2L	12325195	2L_12325195_INS [dm3] 2L_12325195_INS [dm6]	A	ACGTAAAGCAAAATATTTTC...	1.815e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5888622	3L_5888622_SNP [dm3] 3L_5895522_SNP [dm6]	G	T	1.817e^-4	0.822	DOWNSTREAM Pole2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20561606	X_20561606_SNP [dm3] X_20690579_SNP [dm6]	C	T	1.824e^-4	0.822	UPSTREAM run EXON CR45610	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	6710275	3L_6710275_SNP [dm3] 3L_6717175_SNP [dm6]	G	A	1.827e^-4	0.822	INTRON ple	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	21879086	2L_21879086_SNP [dm3] 2L_21879086_SNP [dm6]	C	G	1.830e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16154167	X_16154167_SNP [dm3] X_16260134_SNP [dm6]	T	A	1.835e^-4	0.822	INTERGENIC
3R	25752385	3R_25752385_SNP [dm3] 3R_29926663_SNP [dm6]	T	G	1.838e^-4	0.822	UPSTREAM Jon99Ci & 1 other INTERGENIC
2L	9443469	2L_9443469_SNP [dm3] 2L_9443469_SNP [dm6]	C	T	1.844e^-4	0.822	INTRON numb
3R	9817323	3R_9817323_SNP [dm3] 3R_13991601_SNP [dm6]	T	A	1.851e^-4	0.822	INTRON rdx
3L	14815465	3L_14815465_SNP [dm3] 3L_14822365_SNP [dm6]	G	A	1.851e^-4	0.822	INTRON CG17839
X	9721384	X_9721384_DEL [dm3] X_9827351_DEL [dm6]	AA	A	1.858e^-4	0.822	INTRON CG32698
3L	7471573	3L_7471573_SNP [dm3] 3L_7478473_SNP [dm6]	A	G	1.872e^-4	0.822	INTERGENIC
2L	8807137	2L_8807137_SNP [dm3] 2L_8807137_SNP [dm6]	T	C	1.887e^-4	0.822	INTERGENIC
3L	16216184	3L_16216184_SNP [dm3] 3L_16223084_SNP [dm6]	C	A	1.889e^-4	0.822	DOWNSTREAM tRNA:CR32153 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3R	5129759	3R_5129759_SNP [dm3] 3R_9304037_SNP [dm6]	C	A	1.894e^-4	0.822	INTRON CG8861
3R	25036733	3R_25036733_SNP [dm3] 3R_29211011_SNP [dm6]	C	G	1.898e^-4	0.822	INTERGENIC
3L	16071292	3L_16071292_SNP [dm3] 3L_16078192_SNP [dm6]	C	T	1.901e^-4	0.822	INTRON Mbs	TF binding site BDTNP1_TFBS_dl
3L	15728431	3L_15728431_SNP [dm3] 3L_15735331_SNP [dm6]	A	G	1.908e^-4	0.822	INTERGENIC
2L	13696626	2L_13696626_SNP [dm3] 2L_13696626_SNP [dm6]	G	A	1.912e^-4	0.822	INTRON CG31814
3L	20821277	3L_20821277_SNP [dm3] 3L_20828177_SNP [dm6]	C	T	1.917e^-4	0.822	UTR_5_PRIME Pka-R1 UPSTREAM Pka-R1 INTRON Pka-R1
2L	9052774	2L_9052774_SNP [dm3] 2L_9052774_SNP [dm6]	G	T	1.919e^-4	0.822	UTR_3_PRIME CG31708
2L	9851017	2L_9851017_SNP [dm3] 2L_9851017_SNP [dm6]	T	G	1.920e^-4	0.822	INTRON nAChRalpha6
3R	12745588	3R_12745588_SNP [dm3] 3R_16919866_SNP [dm6]	A	G	1.923e^-4	0.822	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	5145048	3R_5145048_SNP [dm3] 3R_9319326_SNP [dm6]	G	A	1.923e^-4	0.822	INTRON CG8861
X	19019176	X_19019176_SNP [dm3] X_19125143_SNP [dm6]	C	A	1.932e^-4	0.822	UTR_3_PRIME tgy UPSTREAM CG15882 DOWNSTREAM tgy
X	5742546	X_5742546_SNP [dm3] X_5848513_SNP [dm6]	T	C	1.941e^-4	0.822	INTERGENIC
3L	11270074	3L_11270074_SNP [dm3] 3L_11276974_SNP [dm6]	A	G	1.960e^-4	0.822	INTERGENIC
3R	4342921	3R_4342921_SNP [dm3] 3R_8517199_SNP [dm6]	C	T	1.967e^-4	0.822	UPSTREAM CG11737 INTERGENIC
3R	19325039	3R_19325039_SNP [dm3] 3R_23499317_SNP [dm6]	T	C	1.976e^-4	0.822	INTERGENIC
2R	8137699	2R_8137699_SNP [dm3] 2R_12250194_SNP [dm6]	T	C	1.979e^-4	0.822	INTERGENIC
2R	18769488	2R_18769488_SNP [dm3] 2R_22881965_SNP [dm6]	G	A	1.980e^-4	0.822	DOWNSTREAM PIP5K59B & 1 other INTRON CG3501	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12696827	2R_12696827_SNP [dm3] 2R_16809322_SNP [dm6]	C	A	1.989e^-4	0.822	INTERGENIC
3R	8390929	3R_8390929_SNP [dm3] 3R_12565207_SNP [dm6]	T	C	2.002e^-4	0.822	INTRON Octbeta2R
2R	10544277	2R_10544277_SNP [dm3] 2R_14656772_SNP [dm6]	C	T	2.003e^-4	0.822	DOWNSTREAM Adgf-E INTERGENIC
X	6788786	X_6788786_SNP [dm3] X_6894753_SNP [dm6]	A	C	2.003e^-4	0.822	INTERGENIC
2R	9147038	2R_9147038_SNP [dm3] 2R_13259533_SNP [dm6]	G	A	2.005e^-4	0.822	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3L	7721690	3L_7721690_SNP [dm3] 3L_7728590_SNP [dm6]	T	G	2.013e^-4	0.822	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
3R	14344614	3R_14344614_SNP [dm3] 3R_18518892_SNP [dm6]	T	A	2.016e^-4	0.822	INTRON fru
3R	14394850	3R_14394850_SNP [dm3] 3R_18569128_SNP [dm6]	C	A	2.017e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6839692	3L_6839692_SNP [dm3] 3L_6846592_SNP [dm6]	C	G	2.018e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_Kr
X	7620847	X_7620847_SNP [dm3] X_7726814_SNP [dm6]	T	C	2.021e^-4	0.822	SYNONYMOUS_CODING NELF-B DOWNSTREAM Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17696524	2R_17696524_SNP [dm3] 2R_21809019_SNP [dm6]	T	C	2.025e^-4	0.822	INTERGENIC
3L	742992	3L_742992_DEL [dm3] 3L_742992_DEL [dm6]	ATGGTTTTTGATAACTAA...	A	2.044e^-4	0.822	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	19715501	2L_19715501_SNP [dm3] 2L_19715501_SNP [dm6]	C	T	2.046e^-4	0.822	INTRON Lar	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3L	3022256	3L_3022256_SNP [dm3] 3L_3022256_SNP [dm6]	G	A	2.048e^-4	0.822	INTERGENIC
3R	10428058	3R_10428058_SNP [dm3] 3R_14602336_SNP [dm6]	C	T	2.048e^-4	0.822	INTRON stumps	TF binding site mE1_TFBS_HSA
2R	13505970	2R_13505970_SNP [dm3] 2R_17618465_SNP [dm6]	C	A	2.061e^-4	0.822	UPSTREAM CG44403 INTRON CG10936
X	11309234	X_11309234_SNP [dm3] X_11415201_SNP [dm6]	C	T	2.067e^-4	0.822	SYNONYMOUS_CODING Gr10a DOWNSTREAM Or10a	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	13549577	3L_13549577_SNP [dm3] 3L_13556477_SNP [dm6]	G	A	2.069e^-4	0.822	INTRON bru-3
2L	18486575	2L_18486575_SNP [dm3] 2L_18486575_SNP [dm6]	C	T	2.069e^-4	0.822	INTRON CG10176	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	2867864	3R_2867864_SNP [dm3] 3R_7042142_SNP [dm6]	A	C	2.070e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6105638	3R_6105638_DEL [dm3] 3R_10279916_DEL [dm6]	ATGACTCCA	A	2.070e^-4	0.822	INTRON CG43143
3L	9685540	3L_9685540_SNP [dm3] 3L_9692440_SNP [dm6]	A	G	2.079e^-4	0.822	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	19480177	2L_19480177_SNP [dm3] 2L_19480177_SNP [dm6]	A	G	2.102e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	12571356	3L_12571356_SNP [dm3] 3L_12578256_SNP [dm6]	C	T	2.102e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9585926	3R_9585926_SNP [dm3] 3R_13760204_SNP [dm6]	A	G	2.103e^-4	0.822	INTRON CG34383
3L	9509743	3L_9509743_SNP [dm3] 3L_9516643_SNP [dm6]	C	A	2.103e^-4	0.822	INTRON CG33700
X	7622393	X_7622393_SNP [dm3] X_7728360_SNP [dm6]	C	G	2.107e^-4	0.822	UTR_5_PRIME NELF-B UPSTREAM CG12155	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	11320937	X_11320937_SNP [dm3] X_11426904_SNP [dm6]	G	C	2.108e^-4	0.822	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17353856	3R_17353856_SNP [dm3] 3R_21528134_SNP [dm6]	C	T	2.115e^-4	0.822	UTR_3_PRIME CG7956 DOWNSTREAM CG7956	TF binding site BDTNP1_TFBS_slp1
X	2690048	X_2690048_SNP [dm3] X_2796015_SNP [dm6]	A	C	2.117e^-4	0.822	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	16344746	X_16344746_SNP [dm3] X_16450713_SNP [dm6]	A	T	2.119e^-4	0.822	INTRON Rbp2
3R	8274107	3R_8274107_SNP [dm3] 3R_12448385_SNP [dm6]	G	A	2.120e^-4	0.822	NON_SYNONYMOUS_CODING CG5538 UPSTREAM CG18549 DOWNSTREAM Desat1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14678507	2R_14678507_SNP [dm3] 2R_18791002_SNP [dm6]	G	A	2.124e^-4	0.822	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26667135	3R_26667135_SNP [dm3] 3R_30841413_SNP [dm6]	A	C	2.126e^-4	0.822	UTR_3_PRIME CG15544	TF binding site mE1_TFBS_cad
3L	17672196	3L_17672196_SNP [dm3] 3L_17679096_SNP [dm6]	A	G	2.135e^-4	0.822	INTRON CG34251
X	15413680	X_15413680_SNP [dm3] X_15519647_SNP [dm6]	A	G	2.139e^-4	0.822	INTRON Ac13E
2R	3265898	2R_3265898_SNP [dm3] 2R_7378393_SNP [dm6]	C	A	2.148e^-4	0.822	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
2R	12078185	2R_12078185_SNP [dm3] 2R_16190680_SNP [dm6]	C	A	2.157e^-4	0.822	NON_SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11575711	2R_11575711_SNP [dm3] 2R_15688206_SNP [dm6]	G	T	2.164e^-4	0.822	NON_SYNONYMOUS_CODING Cep89 SPLICE_SITE_REGION Cep89 DOWNSTREAM Ranbp11	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15483205	3L_15483205_SNP [dm3] 3L_15490105_SNP [dm6]	G	A	2.166e^-4	0.822	INTERGENIC
2L	17289532	2L_17289532_SNP [dm3] 2L_17289532_SNP [dm6]	A	C	2.170e^-4	0.822	INTERGENIC
2L	3437649	2L_3437649_SNP [dm3] 2L_3437649_SNP [dm6]	A	T	2.172e^-4	0.822	INTERGENIC
3R	22141543	3R_22141543_SNP [dm3] 3R_26315821_SNP [dm6]	T	A	2.177e^-4	0.822	INTERGENIC
3R	22618992	3R_22618992_SNP [dm3] 3R_26793270_SNP [dm6]	A	G	2.180e^-4	0.822	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4843341	3L_4843341_SNP [dm3] 3L_4843341_SNP [dm6]	A	C	2.192e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	14561384	3L_14561384_SNP [dm3] 3L_14568284_SNP [dm6]	G	A	2.192e^-4	0.822	DOWNSTREAM CG42758 INTERGENIC
3R	25912708	3R_25912708_SNP [dm3] 3R_30086986_SNP [dm6]	C	A	2.197e^-4	0.822	INTRON sima
2R	16517576	2R_16517576_SNP [dm3] 2R_20630071_SNP [dm6]	T	C	2.198e^-4	0.822	SYNONYMOUS_CODING Rcd6	TF binding site mE1_TFBS_chinmo
3L	1103387	3L_1103387_SNP [dm3] 3L_1103387_SNP [dm6]	C	T	2.204e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	14985464	3L_14985464_SNP [dm3] 3L_14992364_SNP [dm6]	C	T	2.209e^-4	0.822	UTR_5_PRIME Zip71B DOWNSTREAM mnd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	14182626	X_14182626_SNP [dm3] X_14288593_SNP [dm6]	G	A	2.210e^-4	0.822	DOWNSTREAM Muc12Ea INTRON CG9400
3R	2849733	3R_2849733_SNP [dm3] 3R_7024011_SNP [dm6]	G	T	2.211e^-4	0.822	INTERGENIC
2R	8136809	2R_8136809_SNP [dm3] 2R_12249304_SNP [dm6]	G	T	2.214e^-4	0.822	INTERGENIC
2R	8479078	2R_8479078_SNP [dm3] 2R_12591573_SNP [dm6]	G	T	2.217e^-4	0.822	DOWNSTREAM CR30055 INTRON Sin3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2L	15090500	2L_15090500_SNP [dm3] 2L_15090500_SNP [dm6]	T	A	2.226e^-4	0.822	INTRON CG15270
3L	6902842	3L_6902842_SNP [dm3] 3L_6909742_SNP [dm6]	C	T	2.226e^-4	0.822	INTERGENIC
3L	837693	3L_837693_SNP [dm3] 3L_837693_SNP [dm6]	A	C	2.229e^-4	0.822	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2R	6016574	2R_6016574_SNP [dm3] 2R_10129069_SNP [dm6]	G	A	2.231e^-4	0.822	INTRON gem	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	14293768	3R_14293768_SNP [dm3] 3R_18468046_SNP [dm6]	A	G	2.245e^-4	0.822	INTRON fru
3L	4821762	3L_4821762_DEL [dm3] 3L_4821762_DEL [dm6]	ATTCTAGCACA...	A	2.245e^-4	0.822	INTRON Dhc64C
3R	14351051	3R_14351051_SNP [dm3] 3R_18525329_SNP [dm6]	G	A	2.247e^-4	0.822	INTRON fru	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11168350	3L_11168350_SNP [dm3] 3L_11175250_SNP [dm6]	C	T	2.252e^-4	0.822	INTRON CG14142	TF binding site mE1_TFBS_cad
3R	17823921	3R_17823921_SNP [dm3] 3R_21998199_SNP [dm6]	C	T	2.267e^-4	0.822	INTRON Eip93F
3L	16495547	3L_16495547_SNP [dm3] 3L_16502447_SNP [dm6]	A	G	2.270e^-4	0.822	SYNONYMOUS_CODING CG43373 INTRON CG43373	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19522029	2L_19522029_SNP [dm3] 2L_19522029_SNP [dm6]	C	T	2.271e^-4	0.822	SYNONYMOUS_CODING CG10132	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8740651	2L_8740651_SNP [dm3] 2L_8740651_SNP [dm6]	T	A	2.278e^-4	0.822	UTR_5_PRIME raw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3R	6105689	3R_6105689_SNP [dm3] 3R_10279967_SNP [dm6]	G	A	2.279e^-4	0.822	INTRON CG43143
2L	14749130	2L_14749130_SNP [dm3] 2L_14749130_SNP [dm6]	G	A	2.286e^-4	0.822	INTERGENIC
3R	25727862	3R_25727862_SNP [dm3] 3R_29902140_SNP [dm6]	G	T	2.299e^-4	0.822	INTRON CG31038
3R	24829701	3R_24829701_SNP [dm3] 3R_29003979_SNP [dm6]	C	G	2.301e^-4	0.822	INTRON wat
3L	17633388	3L_17633388_SNP [dm3] 3L_17640288_SNP [dm6]	A	G	2.306e^-4	0.822	INTRON Pep	TF binding site mE1_TFBS_cad
3L	11789647	3L_11789647_SNP [dm3] 3L_11796547_SNP [dm6]	T	C	2.310e^-4	0.822	SYNONYMOUS_CODING Klp68D	TF binding site mE1_TFBS_sens
3L	287105	3L_287105_SNP [dm3] 3L_287105_SNP [dm6]	G	T	2.315e^-4	0.822	NON_SYNONYMOUS_CODING RhoGEF3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11599845	3L_11599845_SNP [dm3] 3L_11606745_SNP [dm6]	T	C	2.330e^-4	0.822	SYNONYMOUS_CODING CG6091
X	5661124	X_5661124_SNP [dm3] X_5767091_SNP [dm6]	G	A	2.340e^-4	0.822	SYNONYMOUS_CODING CG3097 INTRON CG42699	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18563584	3L_18563584_SNP [dm3] 3L_18570484_SNP [dm6]	A	G	2.346e^-4	0.822	INTRON AstC-R1
3L	16823020	3L_16823020_DEL [dm3] 3L_16829920_DEL [dm6]	TGCAGTTTTGCAAT...	T	2.348e^-4	0.822	UPSTREAM CG13024 INTERGENIC
3L	10691485	3L_10691485_SNP [dm3] 3L_10698385_SNP [dm6]	T	G	2.354e^-4	0.822	INTERGENIC
3R	23141757	3R_23141757_SNP [dm3] 3R_27316035_SNP [dm6]	T	A	2.356e^-4	0.822	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	3380974	X_3380974_SNP [dm3] X_3486941_SNP [dm6]	G	A	2.358e^-4	0.822	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3381085	X_3381085_SNP [dm3] X_3487052_SNP [dm6]	G	C	2.358e^-4	0.822	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13600203	3R_13600203_SNP [dm3] 3R_17774481_SNP [dm6]	C	T	2.359e^-4	0.822	UTR_5_PRIME CG43102 INTRON CG43102
3R	13600449	3R_13600449_SNP [dm3] 3R_17774727_SNP [dm6]	C	T	2.359e^-4	0.822	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl
2R	3178769	2R_3178769_SNP [dm3] 2R_7291264_SNP [dm6]	G	A	2.359e^-4	0.822	INTRON pwn	TF binding site mE1_TFBS_cad
3L	13310278	3L_13310278_SNP [dm3] 3L_13317178_SNP [dm6]	C	G	2.362e^-4	0.822	INTERGENIC
3L	4289756	3L_4289756_SNP [dm3] 3L_4289756_SNP [dm6]	C	A	2.373e^-4	0.822	SYNONYMOUS_CODING Hexo1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	21805871	2L_21805871_SNP [dm3] 2L_21805871_SNP [dm6]	G	C	2.375e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	411991	3L_411991_SNP [dm3] 3L_411991_SNP [dm6]	A	T	2.378e^-4	0.822	INTERGENIC
2R	2453816	2R_2453816_SNP [dm3] 2R_6566311_SNP [dm6]	G	A	2.378e^-4	0.822	INTRON jing	TF binding site mE1_TFBS_chinmo
2R	12443558	2R_12443558_INS [dm3] 2R_16556053_INS [dm6]	T	TT	2.388e^-4	0.822	INTRON Syn2
3R	15767069	3R_15767069_SNP [dm3] 3R_19941347_SNP [dm6]	G	A	2.388e^-4	0.822	INTRON Hs6st
2R	19008611	2R_19008611_SNP [dm3] 2R_23121088_SNP [dm6]	G	A	2.393e^-4	0.822	INTERGENIC
3L	9483340	3L_9483340_SNP [dm3] 3L_9490240_SNP [dm6]	A	C	2.396e^-4	0.822	INTRON CG32037	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9444160	2L_9444160_SNP [dm3] 2L_9444160_SNP [dm6]	T	A	2.397e^-4	0.822	INTRON numb
2R	12806871	2R_12806871_SNP [dm3] 2R_16919366_SNP [dm6]	T	C	2.406e^-4	0.822	INTERGENIC
3L	296667	3L_296667_SNP [dm3] 3L_296667_SNP [dm6]	G	A	2.410e^-4	0.822	INTRON RhoGEF3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	3080414	2R_3080414_SNP [dm3] 2R_7192909_SNP [dm6]	C	A	2.419e^-4	0.822	UTR_5_PRIME pk INTRON pk	TF binding site mE1_TFBS_cad
2R	16862751	2R_16862751_SNP [dm3] 2R_20975246_SNP [dm6]	T	C	2.420e^-4	0.822	UPSTREAM CG34115 INTERGENIC
3R	25759599	3R_25759599_SNP [dm3] 3R_29933877_SNP [dm6]	C	T	2.431e^-4	0.822	NON_SYNONYMOUS_CODING CG42557 START_GAINED CG42558 UTR_5_PRIME CG42558 UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7202015	2L_7202015_SNP [dm3] 2L_7202015_SNP [dm6]	C	A	2.432e^-4	0.822	INTRON CG4502
2L	16619032	2L_16619032_SNP [dm3] 2L_16619032_SNP [dm6]	A	C	2.432e^-4	0.822	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	11683256	2R_11683256_SNP [dm3] 2R_15795751_SNP [dm6]	C	T	2.440e^-4	0.822	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	5395530	2R_5395530_SNP [dm3] 2R_9508025_SNP [dm6]	A	C	2.447e^-4	0.822	UTR_5_PRIME brp INTRON brp	TF binding site mE1_TFBS_Trl
2L	11686631	2L_11686631_DEL [dm3] 2L_11686631_DEL [dm6]	ATTACAGGTAATA...	T	2.448e^-4	0.822	INTERGENIC
2L	388595	2L_388595_SNP [dm3] 2L_388595_SNP [dm6]	G	T	2.452e^-4	0.822	INTERGENIC
2L	13876154	2L_13876154_SNP [dm3] 2L_13876154_SNP [dm6]	G	A	2.462e^-4	0.822	INTRON CenG1A
2L	14702724	2L_14702724_SNP [dm3] 2L_14702724_SNP [dm6]	C	G	2.464e^-4	0.822	INTERGENIC
2L	18487687	2L_18487687_SNP [dm3] 2L_18487687_SNP [dm6]	A	T	2.464e^-4	0.822	UTR_3_PRIME CG10176 DOWNSTREAM kon	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
2L	20538018	2L_20538018_SNP [dm3] 2L_20538018_SNP [dm6]	C	T	2.481e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_inv
3R	9306338	3R_9306338_SNP [dm3] 3R_13480616_SNP [dm6]	T	A	2.483e^-4	0.822	INTERGENIC
2L	9446671	2L_9446671_SNP [dm3] 2L_9446671_SNP [dm6]	A	C	2.487e^-4	0.822	INTRON numb	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
X	17945999	X_17945999_SNP [dm3] X_18051966_SNP [dm6]	T	C	2.492e^-4	0.822	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4951156	2R_4951156_SNP [dm3] 2R_9063651_SNP [dm6]	T	A	2.494e^-4	0.822	INTRON ana	regulatory region REDfly_CRMs
3L	4762195	3L_4762195_DEL [dm3] 3L_4762195_DEL [dm6]	GGAATTTATATTAA...	T	2.495e^-4	0.822	INTRON RhoGEF64C
2R	8479010	2R_8479010_SNP [dm3] 2R_12591505_SNP [dm6]	T	C	2.496e^-4	0.822	DOWNSTREAM CR30055 INTRON Sin3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
X	17955171	X_17955171_SNP [dm3] X_18061138_SNP [dm6]	G	A	2.503e^-4	0.822	INTRON Sh
2R	19719350	2R_19719350_SNP [dm3] 2R_23831827_SNP [dm6]	T	G	2.507e^-4	0.822	INTRON CG5549
2L	18486561	2L_18486561_SNP [dm3] 2L_18486561_SNP [dm6]	T	G	2.508e^-4	0.822	INTRON CG10176	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14565106	3L_14565106_DEL [dm3] 3L_14572006_DEL [dm6]	TT	T	2.513e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10697089	3L_10697089_INS [dm3] 3L_10703989_INS [dm6]	A	AGAAAGA	2.533e^-4	0.822	INTERGENIC
X	21160839	X_21160839_SNP [dm3] X_21289812_SNP [dm6]	T	C	2.534e^-4	0.822	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15895215	2R_15895215_SNP [dm3] 2R_20007710_SNP [dm6]	T	C	2.534e^-4	0.822	DOWNSTREAM CR44628 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	21785498	2L_21785498_SNP [dm3] 2L_21785498_SNP [dm6]	A	T	2.536e^-4	0.822	INTRON CG31612
X	13136787	X_13136787_SNP [dm3] X_13242754_SNP [dm6]	C	T	2.538e^-4	0.822	INTRON mew	TF binding site BDTNP1_TFBS_da
3L	12024387	3L_12024387_SNP [dm3] 3L_12031287_SNP [dm6]	G	A	2.542e^-4	0.822	INTRON rols
X	20267857	X_20267857_SNP [dm3] X_20396830_SNP [dm6]	C	T	2.546e^-4	0.822	INTRON HERC2	TF binding site BDTNP1_TFBS_da
3L	743058	3L_743058_SNP [dm3] 3L_743058_SNP [dm6]	T	A	2.558e^-4	0.822	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	19890116	2L_19890116_SNP [dm3] 2L_19890116_SNP [dm6]	T	A	2.559e^-4	0.822	DOWNSTREAM CG10481 INTRON sick
2L	9463956	2L_9463956_SNP [dm3] 2L_9463956_SNP [dm6]	C	A	2.567e^-4	0.822	UTR_3_PRIME numb DOWNSTREAM numb
2R	11683570	2R_11683570_SNP [dm3] 2R_15796065_SNP [dm6]	T	G	2.568e^-4	0.822	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12055408	3L_12055408_SNP [dm3] 3L_12062308_SNP [dm6]	G	A	2.577e^-4	0.822	INTRON rols	TF binding site BDTNP1_TFBS_da
3L	3966618	3L_3966618_DEL [dm3] 3L_3966618_DEL [dm6]	CCGCTGTCC	C	2.583e^-4	0.822	INTERGENIC
X	8156863	X_8156863_SNP [dm3] X_8262830_SNP [dm6]	T	C	2.587e^-4	0.822	INTRON CG1632	TF binding site BDTNP1_TFBS_da
3L	9510164	3L_9510164_SNP [dm3] 3L_9517064_SNP [dm6]	G	A	2.589e^-4	0.822	INTRON CG33700
3L	9510679	3L_9510679_SNP [dm3] 3L_9517579_SNP [dm6]	G	C	2.589e^-4	0.822	INTRON CG33700
3L	4843704	3L_4843704_SNP [dm3] 3L_4843704_SNP [dm6]	C	A	2.598e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	18780293	3R_18780293_SNP [dm3] 3R_22954571_SNP [dm6]	G	C	2.602e^-4	0.822	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	19890129	2L_19890129_SNP [dm3] 2L_19890129_SNP [dm6]	G	A	2.610e^-4	0.822	DOWNSTREAM CG10481 INTRON sick
3L	11789807	3L_11789807_SNP [dm3] 3L_11796707_SNP [dm6]	T	A	2.611e^-4	0.822	INTRON Klp68D
3R	10364938	3R_10364938_SNP [dm3] 3R_14539216_SNP [dm6]	G	T	2.619e^-4	0.822	INTRON Pde6
3R	10437640	3R_10437640_SNP [dm3] 3R_14611918_SNP [dm6]	A	T	2.627e^-4	0.822	INTRON CG14853
3R	1931150	3R_1931150_INS [dm3] 3R_6105428_INS [dm6]	G	GCAATTACATCCAGCTCACA...	2.628e^-4	0.822	UPSTREAM CR44929 INTERGENIC	regulatory region REDfly_CRMs
2R	14678576	2R_14678576_SNP [dm3] 2R_18791071_SNP [dm6]	C	A	2.637e^-4	0.822	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20218600	X_20218600_SNP [dm3] X_20347573_SNP [dm6]	T	A	2.639e^-4	0.822	INTERGENIC
2L	13466047	2L_13466047_SNP [dm3] 2L_13466047_SNP [dm6]	A	G	2.651e^-4	0.822	INTRON CG42784
2R	19522673	2R_19522673_SNP [dm3] 2R_23635150_SNP [dm6]	G	T	2.651e^-4	0.822	INTRON retn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	17061761	X_17061761_SNP [dm3] X_17167728_SNP [dm6]	T	A	2.654e^-4	0.822	INTRON baz
3L	10694223	3L_10694223_SNP [dm3] 3L_10701123_SNP [dm6]	C	A	2.655e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	8133682	2R_8133682_SNP [dm3] 2R_12246177_SNP [dm6]	T	A	2.664e^-4	0.822	DOWNSTREAM CR44315 INTERGENIC
3R	18494639	3R_18494639_SNP [dm3] 3R_22668917_SNP [dm6]	T	G	2.668e^-4	0.822	INTRON CG45058	TF binding site BDTNP1_TFBS_dl
2R	16794266	2R_16794266_SNP [dm3] 2R_20906761_SNP [dm6]	C	G	2.674e^-4	0.822	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
2R	16794363	2R_16794363_SNP [dm3] 2R_20906858_SNP [dm6]	T	A	2.674e^-4	0.822	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
2R	16794370	2R_16794370_SNP [dm3] 2R_20906865_SNP [dm6]	C	T	2.674e^-4	0.822	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
2R	16794579	2R_16794579_SNP [dm3] 2R_20907074_SNP [dm6]	T	A	2.674e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	27122951	3R_27122951_SNP [dm3] 3R_31297229_SNP [dm6]	C	G	2.680e^-4	0.822	INTERGENIC
2L	696945	2L_696945_SNP [dm3] 2L_696945_SNP [dm6]	C	T	2.681e^-4	0.822	INTRON ds
2R	18475324	2R_18475324_DEL [dm3] 2R_22587819_DEL [dm6]	GA	G	2.685e^-4	0.822	INTRON dnr1
2L	9504688	2L_9504688_SNP [dm3] 2L_9504688_SNP [dm6]	G	A	2.687e^-4	0.822	SYNONYMOUS_CODING CG33298
2L	14689608	2L_14689608_SNP [dm3] 2L_14689608_SNP [dm6]	A	G	2.687e^-4	0.822	UPSTREAM osp INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	11982358	3R_11982358_SNP [dm3] 3R_16156636_SNP [dm6]	A	G	2.688e^-4	0.822	INTRON CG6006
2R	8479079	2R_8479079_SNP [dm3] 2R_12591574_SNP [dm6]	G	T	2.691e^-4	0.822	DOWNSTREAM CR30055 INTRON Sin3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2L	510256	2L_510256_SNP [dm3] 2L_510256_SNP [dm6]	A	C	2.695e^-4	0.822	INTRON ush	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	3966428	3L_3966428_SNP [dm3] 3L_3966428_SNP [dm6]	C	A	2.714e^-4	0.822	INTERGENIC
2R	7107070	2R_7107070_SNP [dm3] 2R_11219565_SNP [dm6]	T	C	2.717e^-4	0.822	UTR_5_PRIME Syx6 UPSTREAM Syx6 & 1 other INTRON CG9084	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	12665890	X_12665890_SNP [dm3] X_12771857_SNP [dm6]	C	G	2.724e^-4	0.822	UTR_3_PRIME CG3812 & 1 other DOWNSTREAM CG3812
3L	4841343	3L_4841343_SNP [dm3] 3L_4841343_SNP [dm6]	A	C	2.731e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	14333074	3R_14333074_SNP [dm3] 3R_18507352_SNP [dm6]	G	A	2.735e^-4	0.822	UPSTREAM fru INTRON fru
2R	9247087	2R_9247087_SNP [dm3] 2R_13359582_SNP [dm6]	A	G	2.750e^-4	0.822	INTERGENIC
2L	21846992	2L_21846992_SNP [dm3] 2L_21846992_SNP [dm6]	A	C	2.755e^-4	0.822	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	20489476	3R_20489476_SNP [dm3] 3R_24663754_SNP [dm6]	G	T	2.760e^-4	0.822	INTRON slo	regulatory region REDfly_CRMs
3R	12502299	3R_12502299_SNP [dm3] 3R_16676577_SNP [dm6]	C	A	2.765e^-4	0.822	INTRON Ubx	TF binding site mE1_TFBS_cad
3R	25894705	3R_25894705_SNP [dm3] 3R_30068983_SNP [dm6]	C	G	2.770e^-4	0.822	INTRON sima
3L	8214212	3L_8214212_SNP [dm3] 3L_8221112_SNP [dm6]	G	T	2.774e^-4	0.822	INTERGENIC
3L	15728478	3L_15728478_SNP [dm3] 3L_15735378_SNP [dm6]	G	A	2.775e^-4	0.822	INTERGENIC
2R	18229379	2R_18229379_SNP [dm3] 2R_22341874_SNP [dm6]	T	A	2.786e^-4	0.822	INTRON Liprin-gamma	TF binding site mE1_TFBS_cad
3L	10842862	3L_10842862_SNP [dm3] 3L_10849762_SNP [dm6]	T	C	2.794e^-4	0.822	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	7031461	2R_7031461_SNP [dm3] 2R_11143956_SNP [dm6]	G	A	2.794e^-4	0.822	UPSTREAM CG13229 INTRON CG13229
2R	20340340	2R_20340340_SNP [dm3] 2R_24452817_SNP [dm6]	T	C	2.800e^-4	0.822	INTRON CG4563	TF binding site mE1_TFBS_chinmo
3L	7726328	3L_7726328_SNP [dm3] 3L_7733228_SNP [dm6]	T	C	2.802e^-4	0.822	DOWNSTREAM Snmp2 INTRON CG32373
3L	13487564	3L_13487564_SNP [dm3] 3L_13494464_SNP [dm6]	G	T	2.804e^-4	0.822	INTRON Tgi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	1103352	3L_1103352_INS [dm3] 3L_1103352_INS [dm6]	T	TGTAT	2.812e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	15693061	3L_15693061_SNP [dm3] 3L_15699961_SNP [dm6]	C	T	2.813e^-4	0.822	UPSTREAM comm2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3966356	3L_3966356_SNP [dm3] 3L_3966356_SNP [dm6]	T	C	2.816e^-4	0.822	INTERGENIC
3R	9585930	3R_9585930_SNP [dm3] 3R_13760208_SNP [dm6]	C	T	2.828e^-4	0.822	INTRON CG34383
X	9814806	X_9814806_DEL [dm3] X_9920773_DEL [dm6]	TT	T	2.829e^-4	0.822	INTERGENIC
3L	2645067	3L_2645067_SNP [dm3] 3L_2645067_SNP [dm6]	C	T	2.841e^-4	0.822	UPSTREAM CG1143 INTERGENIC
3L	14925731	3L_14925731_MNP [dm3] 3L_14932631_MNP [dm6]	TGTA	ATGG	2.844e^-4	0.822	INTRON DCX-EMAP
2L	14394891	2L_14394891_SNP [dm3] 2L_14394891_SNP [dm6]	C	T	2.844e^-4	0.822	INTRON elB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3465305	X_3465305_SNP [dm3] X_3571272_SNP [dm6]	G	A	2.845e^-4	0.822	SYNONYMOUS_CODING ppk8 DOWNSTREAM CG2875 INTRON CG32791
2L	11686657	2L_11686657_SNP [dm3] 2L_11686657_SNP [dm6]	T	C	2.855e^-4	0.822	INTERGENIC
2L	19941325	2L_19941325_SNP [dm3] 2L_19941325_SNP [dm6]	C	T	2.855e^-4	0.822	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2L	21866518	2L_21866518_SNP [dm3] 2L_21866518_SNP [dm6]	A	G	2.869e^-4	0.822	UPSTREAM CR44917 & 1 other DOWNSTREAM CR44919 INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16422361	2R_16422361_SNP [dm3] 2R_20534856_SNP [dm6]	C	T	2.873e^-4	0.822	SYNONYMOUS_CODING CG18067 DOWNSTREAM CG30154
2L	14686016	2L_14686016_SNP [dm3] 2L_14686016_SNP [dm6]	A	G	2.892e^-4	0.822	INTRON osp
2R	11802001	2R_11802001_SNP [dm3] 2R_15914496_SNP [dm6]	A	G	2.894e^-4	0.822	INTRON sli	TF binding site mE1_TFBS_cad
3R	10196368	3R_10196368_SNP [dm3] 3R_14370646_SNP [dm6]	T	A	2.895e^-4	0.822	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	6105675	3R_6105675_SNP [dm3] 3R_10279953_SNP [dm6]	T	A	2.895e^-4	0.822	INTRON CG43143
3L	7835523	3L_7835523_SNP [dm3] 3L_7842423_SNP [dm6]	C	G	2.899e^-4	0.822	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	10693458	3L_10693458_SNP [dm3] 3L_10700358_SNP [dm6]	A	C	2.910e^-4	0.822	INTERGENIC
3R	2868311	3R_2868311_INS [dm3] 3R_7042589_INS [dm6]	C	CGGA	2.914e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	3381344	X_3381344_SNP [dm3] X_3487311_SNP [dm6]	T	C	2.916e^-4	0.822	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_sens
X	7617605	X_7617605_SNP [dm3] X_7723572_SNP [dm6]	A	T	2.917e^-4	0.822	NON_SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	6791647	2L_6791647_SNP [dm3] 2L_6791647_SNP [dm6]	C	A	2.917e^-4	0.822	INTRON nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3532941	3L_3532941_SNP [dm3] 3L_3532941_SNP [dm6]	T	C	2.935e^-4	0.822	INTRON Eip63E
2R	8137206	2R_8137206_SNP [dm3] 2R_12249701_SNP [dm6]	T	C	2.941e^-4	0.822	INTERGENIC
2L	11219801	2L_11219801_SNP [dm3] 2L_11219801_SNP [dm6]	T	A	2.944e^-4	0.822	INTRON ab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	8532579	3L_8532579_SNP [dm3] 3L_8539479_SNP [dm6]	T	A	2.947e^-4	0.822	INTERGENIC
2R	6962276	2R_6962276_SNP [dm3] 2R_11074771_SNP [dm6]	A	G	2.956e^-4	0.822	INTRON luna
3R	10120953	3R_10120953_SNP [dm3] 3R_14295231_SNP [dm6]	T	C	2.970e^-4	0.822	INTRON CG12207
3R	15150774	3R_15150774_SNP [dm3] 3R_19325052_SNP [dm6]	T	A	2.971e^-4	0.822	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	4362491	3R_4362491_SNP [dm3] 3R_8536769_SNP [dm6]	A	G	2.976e^-4	0.822	INTERGENIC
2R	16794328	2R_16794328_SNP [dm3] 2R_20906823_SNP [dm6]	G	A	2.977e^-4	0.822	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
2R	16794339	2R_16794339_SNP [dm3] 2R_20906834_SNP [dm6]	T	A	2.977e^-4	0.822	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
2R	12116981	2R_12116981_SNP [dm3] 2R_16229476_SNP [dm6]	C	T	2.984e^-4	0.822	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10984556	2L_10984556_SNP [dm3] 2L_10984556_SNP [dm6]	T	C	2.994e^-4	0.822	INTRON piwi	transposable element FlyBase
X	13739147	X_13739147_SNP [dm3] X_13845114_SNP [dm6]	A	G	2.995e^-4	0.822	INTRON AMPdeam	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu
3L	11276715	3L_11276715_SNP [dm3] 3L_11283615_SNP [dm6]	A	C	2.995e^-4	0.822	INTERGENIC
3L	11276725	3L_11276725_SNP [dm3] 3L_11283625_SNP [dm6]	A	T	2.995e^-4	0.822	INTERGENIC
3R	23141761	3R_23141761_INS [dm3] 3R_27316039_INS [dm6]	G	GG	3.009e^-4	0.822	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	9147482	2R_9147482_SNP [dm3] 2R_13259977_SNP [dm6]	A	G	3.011e^-4	0.822	UPSTREAM CG42319 INTERGENIC
X	21171393	X_21171393_SNP [dm3] X_21300366_SNP [dm6]	G	C	3.012e^-4	0.822	UTR_5_PRIME CG1718
3L	13549586	3L_13549586_SNP [dm3] 3L_13556486_SNP [dm6]	C	A	3.016e^-4	0.822	INTRON bru-3
3L	566601	3L_566601_SNP [dm3] 3L_566601_SNP [dm6]	G	A	3.017e^-4	0.822	INTRON hipk
3R	12566228	3R_12566228_SNP [dm3] 3R_16740506_SNP [dm6]	G	A	3.017e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3L	3143885	3L_3143885_SNP [dm3] 3L_3143885_SNP [dm6]	G	C	3.020e^-4	0.822	UTR_5_PRIME CG1291 UPSTREAM CG11537	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	12325115	2L_12325115_SNP [dm3] 2L_12325115_SNP [dm6]	T	C	3.022e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5511194	2L_5511194_SNP [dm3] 2L_5511194_SNP [dm6]	A	C	3.029e^-4	0.822	INTERGENIC
2R	13506030	2R_13506030_SNP [dm3] 2R_17618525_SNP [dm6]	C	A	3.030e^-4	0.822	UPSTREAM CG44403 INTRON CG10936
3L	3104455	3L_3104455_MNP [dm3] 3L_3104455_MNP [dm6]	CGC	TCA	3.037e^-4	0.822	INTRON Cht7
3R	25119684	3R_25119684_SNP [dm3] 3R_29293962_SNP [dm6]	T	C	3.039e^-4	0.822	UTR_3_PRIME CG14506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	19200358	3R_19200358_SNP [dm3] 3R_23374636_SNP [dm6]	A	G	3.056e^-4	0.822	DOWNSTREAM CG42828 INTERGENIC
X	4475044	X_4475044_SNP [dm3] X_4581011_SNP [dm6]	G	A	3.056e^-4	0.822	INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8590702	3L_8590702_SNP [dm3] 3L_8597602_SNP [dm6]	G	A	3.059e^-4	0.822	NON_SYNONYMOUS_CODING CG43078	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14929548	3L_14929548_SNP [dm3] 3L_14936448_SNP [dm6]	C	A	3.065e^-4	0.822	INTRON DCX-EMAP
3L	11843425	3L_11843425_SNP [dm3] 3L_11850325_SNP [dm6]	T	A	3.067e^-4	0.822	DOWNSTREAM CG44837 INTERGENIC
X	15413495	X_15413495_SNP [dm3] X_15519462_SNP [dm6]	A	C	3.071e^-4	0.822	INTRON Ac13E
2R	14678570	2R_14678570_SNP [dm3] 2R_18791065_SNP [dm6]	C	T	3.075e^-4	0.822	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	795404	2L_795404_SNP [dm3] 2L_795404_SNP [dm6]	T	G	3.075e^-4	0.822	INTERGENIC
3L	8556612	3L_8556612_SNP [dm3] 3L_8563512_SNP [dm6]	C	G	3.086e^-4	0.822	INTRON rhea
2L	3126389	2L_3126389_SNP [dm3] 2L_3126389_SNP [dm6]	C	T	3.087e^-4	0.822	NON_SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	14854201	3R_14854201_SNP [dm3] 3R_19028479_SNP [dm6]	C	T	3.089e^-4	0.822	NON_SYNONYMOUS_CODING gatA UPSTREAM P5cr DOWNSTREAM NP15.6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11340700	2R_11340700_SNP [dm3] 2R_15453195_SNP [dm6]	T	G	3.092e^-4	0.822	INTRON CG43729
2R	13687918	2R_13687918_INS [dm3] 2R_17800413_INS [dm6]	C	CGCACAC	3.093e^-4	0.822	UTR_3_PRIME Dhit UPSTREAM grh DOWNSTREAM CR45270	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	6903932	3L_6903932_SNP [dm3] 3L_6910832_SNP [dm6]	C	G	3.099e^-4	0.822	INTERGENIC
X	16808615	X_16808615_SNP [dm3] X_16914582_SNP [dm6]	T	A	3.100e^-4	0.822	INTRON CG4928
2R	19007092	2R_19007092_SNP [dm3] 2R_23119569_SNP [dm6]	G	T	3.108e^-4	0.822	INTERGENIC
3L	17323053	3L_17323053_SNP [dm3] 3L_17329953_SNP [dm6]	A	T	3.109e^-4	0.822	UPSTREAM Or74a INTERGENIC
2R	14724100	2R_14724100_SNP [dm3] 2R_18836595_SNP [dm6]	A	C	3.120e^-4	0.822	DOWNSTREAM CG15099 INTRON CG15083
2L	10785598	2L_10785598_SNP [dm3] 2L_10785598_SNP [dm6]	A	T	3.122e^-4	0.822	INTRON CG31869 EXON CR44582
2R	5234040	2R_5234040_SNP [dm3] 2R_9346535_SNP [dm6]	T	C	3.123e^-4	0.822	INTRON CG13954 & 2 others	TF binding site mE1_TFBS_chinmo
3L	14955046	3L_14955046_SNP [dm3] 3L_14961946_SNP [dm6]	T	C	3.127e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8633305	X_8633305_SNP [dm3] X_8739272_SNP [dm6]	A	T	3.144e^-4	0.822	INTERGENIC
2L	5883882	2L_5883882_SNP [dm3] 2L_5883882_SNP [dm6]	C	A	3.148e^-4	0.822	NON_SYNONYMOUS_CODING CG44574 DOWNSTREAM Sfp26Ac
2R	16436597	2R_16436597_SNP [dm3] 2R_20549092_SNP [dm6]	C	T	3.149e^-4	0.822	NON_SYNONYMOUS_CODING Obp57d UTR_3_PRIME Cpr57A UPSTREAM Obp57e DOWNSTREAM Cpr57A	regulatory region REDfly_CRMs
3R	12114646	3R_12114646_INS [dm3] 3R_16288924_INS [dm6]	T	TTT	3.150e^-4	0.822	UPSTREAM gish INTRON gish	TF binding site mE1_TFBS_inv
3R	21405169	3R_21405169_SNP [dm3] 3R_25579447_SNP [dm6]	C	T	3.151e^-4	0.822	INTRON msi
X	2926031	X_2926031_SNP [dm3] X_3031998_SNP [dm6]	C	A	3.152e^-4	0.822	INTRON kirre
3R	2868309	3R_2868309_SNP [dm3] 3R_7042587_SNP [dm6]	G	A	3.155e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	3819425	3L_3819425_SNP [dm3] 3L_3819425_SNP [dm6]	C	T	3.159e^-4	0.822	INTRON enc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	7619303	X_7619303_SNP [dm3] X_7725270_SNP [dm6]	A	C	3.161e^-4	0.822	NON_SYNONYMOUS_CODING Hira DOWNSTREAM NELF-B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3103931	3L_3103931_SNP [dm3] 3L_3103931_SNP [dm6]	T	C	3.172e^-4	0.822	INTRON Cht7
2L	10258426	2L_10258426_SNP [dm3] 2L_10258426_SNP [dm6]	A	G	3.177e^-4	0.822	INTRON Pten
3L	14929519	3L_14929519_SNP [dm3] 3L_14936419_SNP [dm6]	G	A	3.178e^-4	0.822	INTRON DCX-EMAP
X	8156039	X_8156039_SNP [dm3] X_8262006_SNP [dm6]	A	T	3.183e^-4	0.822	INTRON CG1632
X	10897698	X_10897698_SNP [dm3] X_11003665_SNP [dm6]	A	T	3.194e^-4	0.822	INTRON CG42339
3R	22780339	3R_22780339_SNP [dm3] 3R_26954617_SNP [dm6]	T	C	3.207e^-4	0.822	INTRON CG6330	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15639667	3L_15639667_SNP [dm3] 3L_15646567_SNP [dm6]	C	G	3.213e^-4	0.822	INTRON comm3
2R	12193614	2R_12193614_SNP [dm3] 2R_16306109_SNP [dm6]	G	A	3.214e^-4	0.822	EXON CR45232
3L	16202260	3L_16202260_SNP [dm3] 3L_16209160_SNP [dm6]	A	C	3.223e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_cad
3L	743046	3L_743046_SNP [dm3] 3L_743046_SNP [dm6]	A	T	3.224e^-4	0.822	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	19912411	2L_19912411_SNP [dm3] 2L_19912411_SNP [dm6]	C	A	3.229e^-4	0.822	UPSTREAM CR43097 & 1 other DOWNSTREAM Victoria INTRON sick
3L	9509808	3L_9509808_SNP [dm3] 3L_9516708_SNP [dm6]	G	T	3.231e^-4	0.822	INTRON CG33700
3L	17672015	3L_17672015_SNP [dm3] 3L_17678915_SNP [dm6]	A	T	3.234e^-4	0.822	INTRON CG34251
X	19690855	X_19690855_SNP [dm3] X_19796822_SNP [dm6]	G	C	3.240e^-4	0.822	INTERGENIC
3R	25752413	3R_25752413_SNP [dm3] 3R_29926691_SNP [dm6]	G	A	3.244e^-4	0.822	UPSTREAM Jon99Ci & 1 other INTERGENIC
3L	457066	3L_457066_DEL [dm3] 3L_457066_DEL [dm6]	AAACGTTCGACA...	A	3.246e^-4	0.822	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	457083	3L_457083_DEL [dm3] 3L_457083_DEL [dm6]	CCCTAGATT	C	3.246e^-4	0.822	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	461575	3L_461575_SNP [dm3] 3L_461575_SNP [dm6]	A	T	3.246e^-4	0.822	INTRON klar
3L	461577	3L_461577_SNP [dm3] 3L_461577_SNP [dm6]	T	A	3.246e^-4	0.822	INTRON klar
3L	461600	3L_461600_SNP [dm3] 3L_461600_SNP [dm6]	C	A	3.246e^-4	0.822	INTRON klar
3R	15154147	3R_15154147_SNP [dm3] 3R_19328425_SNP [dm6]	T	C	3.246e^-4	0.822	UPSTREAM CR44175 INTERGENIC
2L	510296	2L_510296_SNP [dm3] 2L_510296_SNP [dm6]	C	G	3.246e^-4	0.822	INTRON ush	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	22200488	3L_22200488_INS [dm3] 3L_22207388_INS [dm6]	T	TT	3.247e^-4	0.822	INTRON olf413
3R	13570318	3R_13570318_SNP [dm3] 3R_17744596_SNP [dm6]	C	A	3.252e^-4	0.822	INTRON TyrRII	TF binding site mE1_TFBS_cad
2L	17387254	2L_17387254_SNP [dm3] 2L_17387254_SNP [dm6]	T	C	3.257e^-4	0.822	INTRON CLIP-190
3L	11277473	3L_11277473_SNP [dm3] 3L_11284373_SNP [dm6]	G	A	3.260e^-4	0.822	UPSTREAM CR45404 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	7721688	3L_7721688_SNP [dm3] 3L_7728588_SNP [dm6]	A	G	3.263e^-4	0.822	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
2L	7202011	2L_7202011_SNP [dm3] 2L_7202011_SNP [dm6]	G	A	3.267e^-4	0.822	INTRON CG4502
3L	9491503	3L_9491503_SNP [dm3] 3L_9498403_SNP [dm6]	T	C	3.270e^-4	0.822	INTRON path
2L	16855766	2L_16855766_SNP [dm3] 2L_16855766_SNP [dm6]	G	A	3.271e^-4	0.822	INTRON CG31809
2L	606460	2L_606460_SNP [dm3] 2L_606460_SNP [dm6]	T	C	3.271e^-4	0.822	DOWNSTREAM CR43648 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9201306	3L_9201306_SNP [dm3] 3L_9208206_SNP [dm6]	C	T	3.278e^-4	0.822	UTR_5_PRIME Slc45-1 UPSTREAM Slc45-1
3L	7257568	3L_7257568_SNP [dm3] 3L_7264468_SNP [dm6]	G	A	3.279e^-4	0.822	UPSTREAM CG14830 INTERGENIC
3L	10694245	3L_10694245_SNP [dm3] 3L_10701145_SNP [dm6]	G	A	3.284e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10410917	3R_10410917_SNP [dm3] 3R_14585195_SNP [dm6]	A	T	3.285e^-4	0.822	INTRON stumps	TF binding site BDTNP1_TFBS_prd
3L	391184	3L_391184_SNP [dm3] 3L_391184_SNP [dm6]	C	A	3.286e^-4	0.822	DOWNSTREAM CR45378 INTRON trh
3L	10866281	3L_10866281_SNP [dm3] 3L_10873181_SNP [dm6]	G	A	3.289e^-4	0.822	SYNONYMOUS_CODING tna	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11843421	3L_11843421_SNP [dm3] 3L_11850321_SNP [dm6]	G	C	3.298e^-4	0.822	DOWNSTREAM CG44837 INTERGENIC
3R	12497505	3R_12497505_SNP [dm3] 3R_16671783_SNP [dm6]	C	T	3.299e^-4	0.822	INTRON Ubx
2L	19817600	2L_19817600_SNP [dm3] 2L_19817600_SNP [dm6]	A	C	3.313e^-4	0.822	INTRON sick	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	11846780	3L_11846780_SNP [dm3] 3L_11853680_SNP [dm6]	C	A	3.317e^-4	0.822	INTRON CG44837
X	12273737	X_12273737_SNP [dm3] X_12379704_SNP [dm6]	G	A	3.318e^-4	0.822	INTERGENIC
3L	15483300	3L_15483300_SNP [dm3] 3L_15490200_SNP [dm6]	A	C	3.327e^-4	0.822	INTERGENIC
2R	9457779	2R_9457779_SNP [dm3] 2R_13570274_SNP [dm6]	A	T	3.332e^-4	0.822	DOWNSTREAM CG42807 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2L	268796	2L_268796_DEL [dm3] 2L_268796_DEL [dm6]	AA	A	3.338e^-4	0.822	UPSTREAM CG3345 INTRON CG3645
3L	2645611	3L_2645611_SNP [dm3] 3L_2645611_SNP [dm6]	C	A	3.342e^-4	0.822	INTRON CG1143	TF binding site mE1_TFBS_cad
2R	19408521	2R_19408521_SNP [dm3] 2R_23520998_SNP [dm6]	T	C	3.346e^-4	0.822	INTRON RabX1
X	12665748	X_12665748_SNP [dm3] X_12771715_SNP [dm6]	C	T	3.347e^-4	0.822	UTR_3_PRIME CG3812 DOWNSTREAM CG32647 & 1 other
3R	19921621	3R_19921621_SNP [dm3] 3R_24095899_SNP [dm6]	G	A	3.351e^-4	0.822	INTRON 4EHP
X	7879067	X_7879067_SNP [dm3] X_7985034_SNP [dm6]	T	C	3.352e^-4	0.822	SYNONYMOUS_CODING sn
2L	16033629	2L_16033629_SNP [dm3] 2L_16033629_SNP [dm6]	A	T	3.353e^-4	0.822	INTRON beat-Ic
3L	10025688	3L_10025688_SNP [dm3] 3L_10032588_SNP [dm6]	A	T	3.357e^-4	0.822	INTRON dpr6
3L	8929326	3L_8929326_SNP [dm3] 3L_8936226_SNP [dm6]	C	T	3.371e^-4	0.822	NON_SYNONYMOUS_CODING CG43783 DOWNSTREAM orb2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6840407	3L_6840407_SNP [dm3] 3L_6847307_SNP [dm6]	T	A	3.373e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_inv
X	5538198	X_5538198_SNP [dm3] X_5644165_SNP [dm6]	G	A	3.374e^-4	0.822	INTRON CG42492
2R	8908601	2R_8908601_SNP [dm3] 2R_13021096_SNP [dm6]	T	A	3.374e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_cad
3L	396393	3L_396393_SNP [dm3] 3L_396393_SNP [dm6]	T	C	3.378e^-4	0.822	INTERGENIC
2L	2021720	2L_2021720_SNP [dm3] 2L_2021720_SNP [dm6]	T	A	3.379e^-4	0.822	INTRON CG4238
2L	19898638	2L_19898638_SNP [dm3] 2L_19898638_SNP [dm6]	G	A	3.387e^-4	0.822	INTRON sick
3L	16202254	3L_16202254_SNP [dm3] 3L_16209154_SNP [dm6]	C	T	3.389e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_cad
2R	17887141	2R_17887141_SNP [dm3] 2R_21999636_SNP [dm6]	C	A	3.395e^-4	0.822	INTRON CG34370
2R	5234047	2R_5234047_SNP [dm3] 2R_9346542_SNP [dm6]	G	C	3.398e^-4	0.822	INTRON CG13954 & 2 others	TF binding site mE1_TFBS_chinmo
3L	535760	3L_535760_SNP [dm3] 3L_535760_SNP [dm6]	G	T	3.414e^-4	0.822	INTRON klar	TF binding site mE1_TFBS_Trl
X	11320946	X_11320946_SNP [dm3] X_11426913_SNP [dm6]	T	G	3.414e^-4	0.822	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12532444	3L_12532444_SNP [dm3] 3L_12539344_SNP [dm6]	C	T	3.431e^-4	0.822	DOWNSTREAM sowah INTRON sowah
3L	10969435	3L_10969435_SNP [dm3] 3L_10976335_SNP [dm6]	A	C	3.441e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_cad
X	10517805	X_10517805_SNP [dm3] X_10623772_SNP [dm6]	G	C	3.445e^-4	0.822	UTR_3_PRIME CG9806 UPSTREAM Rab9Db
3L	1010439	3L_1010439_SNP [dm3] 3L_1010439_SNP [dm6]	A	G	3.446e^-4	0.822	INTRON trio
3L	20176231	3L_20176231_SNP [dm3] 3L_20183131_SNP [dm6]	T	A	3.450e^-4	0.822	INTRON CG42674	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20316961	3R_20316961_SNP [dm3] 3R_24491239_SNP [dm6]	C	G	3.454e^-4	0.822	DOWNSTREAM nAChRalpha2 INTERGENIC
2R	3079221	2R_3079221_SNP [dm3] 2R_7191716_SNP [dm6]	C	A	3.454e^-4	0.822	INTRON pk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20946386	2R_20946386_SNP [dm3] 2R_25058863_SNP [dm6]	T	G	3.456e^-4	0.822	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3R	9823760	3R_9823760_SNP [dm3] 3R_13998038_SNP [dm6]	T	C	3.461e^-4	0.822	INTRON rdx	TF binding site mE1_TFBS_HSA
3L	5569344	3L_5569344_SNP [dm3] 3L_5576244_SNP [dm6]	A	G	3.462e^-4	0.822	INTRON Msr-110
2R	11540775	2R_11540775_SNP [dm3] 2R_15653270_SNP [dm6]	G	A	3.467e^-4	0.822	INTRON CG42524
3R	14606267	3R_14606267_SNP [dm3] 3R_18780545_SNP [dm6]	A	T	3.478e^-4	0.822	UPSTREAM CG7720 INTRON CG7720	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7202010	2L_7202010_SNP [dm3] 2L_7202010_SNP [dm6]	C	T	3.488e^-4	0.822	INTRON CG4502
3L	741724	3L_741724_INS [dm3] 3L_741724_INS [dm6]	C	CGC	3.490e^-4	0.822	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	9147009	2R_9147009_SNP [dm3] 2R_13259504_SNP [dm6]	T	G	3.509e^-4	0.822	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2R	18290401	2R_18290401_SNP [dm3] 2R_22402896_SNP [dm6]	G	A	3.518e^-4	0.822	UPSTREAM babos EXON CR44760	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	9426788	2L_9426788_SNP [dm3] 2L_9426788_SNP [dm6]	C	T	3.520e^-4	0.822	UTR_5_PRIME Fbp2 UPSTREAM Fbp2 DOWNSTREAM Mco1
X	10446501	X_10446501_SNP [dm3] X_10552468_SNP [dm6]	T	C	3.525e^-4	0.822	INTRON spri
X	11320947	X_11320947_SNP [dm3] X_11426914_SNP [dm6]	T	C	3.526e^-4	0.822	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10435009	3R_10435009_SNP [dm3] 3R_14609287_SNP [dm6]	C	A	3.531e^-4	0.822	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	6964734	2R_6964734_SNP [dm3] 2R_11077229_SNP [dm6]	G	A	3.534e^-4	0.822	INTRON luna	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10129257	2L_10129257_SNP [dm3] 2L_10129257_SNP [dm6]	C	A	3.537e^-4	0.822	INTRON CG44153
3L	297100	3L_297100_SNP [dm3] 3L_297100_SNP [dm6]	T	A	3.544e^-4	0.822	UPSTREAM RhoGEF3 INTRON RhoGEF3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	17315218	2L_17315218_SNP [dm3] 2L_17315218_SNP [dm6]	T	C	3.545e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	17455391	3L_17455391_SNP [dm3] 3L_17462291_SNP [dm6]	C	T	3.545e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	6643083	X_6643083_INS [dm3] X_6749050_INS [dm6]	T	TCAGAGAT	3.548e^-4	0.822	INTRON CG14439
3L	13310271	3L_13310271_SNP [dm3] 3L_13317171_SNP [dm6]	C	T	3.551e^-4	0.822	INTERGENIC
3R	21344585	3R_21344585_SNP [dm3] 3R_25518863_SNP [dm6]	G	T	3.551e^-4	0.822	INTRON msi	TF binding site mE1_TFBS_Trl
2L	4933968	2L_4933968_SNP [dm3] 2L_4933968_SNP [dm6]	G	A	3.555e^-4	0.822	INTRON hoe2
2R	18010243	2R_18010243_SNP [dm3] 2R_22122738_SNP [dm6]	G	A	3.558e^-4	0.822	UPSTREAM mei-S332 & 1 other INTRON mei-S332	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10025690	3L_10025690_DEL [dm3] 3L_10032590_DEL [dm6]	TCAAACGTGATATGAAATAT...	A	3.560e^-4	0.822	INTRON dpr6
3L	4842247	3L_4842247_SNP [dm3] 3L_4842247_SNP [dm6]	G	A	3.561e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	18780271	3R_18780271_SNP [dm3] 3R_22954549_SNP [dm6]	G	A	3.565e^-4	0.822	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	2660003	2L_2660003_SNP [dm3] 2L_2660003_SNP [dm6]	T	A	3.567e^-4	0.822	INTERGENIC
3L	17155400	3L_17155400_SNP [dm3] 3L_17162300_SNP [dm6]	T	G	3.568e^-4	0.822	INTRON Rbp6	TF binding site mE1_TFBS_inv
2L	4624701	2L_4624701_SNP [dm3] 2L_4624701_SNP [dm6]	C	T	3.569e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9147010	2R_9147010_SNP [dm3] 2R_13259505_SNP [dm6]	T	G	3.576e^-4	0.822	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2R	8136797	2R_8136797_SNP [dm3] 2R_12249292_SNP [dm6]	G	A	3.580e^-4	0.822	INTERGENIC
3L	457095	3L_457095_MNP [dm3] 3L_457095_MNP [dm6]	AATC	CTAT	3.584e^-4	0.822	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22768774	3R_22768774_SNP [dm3] 3R_26943052_SNP [dm6]	T	C	3.585e^-4	0.822	SYNONYMOUS_CODING sda	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	18454882	X_18454882_SNP [dm3] X_18560849_SNP [dm6]	G	A	3.587e^-4	0.822	INTRON Bx
2L	15090517	2L_15090517_SNP [dm3] 2L_15090517_SNP [dm6]	A	G	3.592e^-4	0.822	INTRON CG15270
2L	7206708	2L_7206708_SNP [dm3] 2L_7206708_SNP [dm6]	G	A	3.593e^-4	0.822	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784	TF binding site mE1_TFBS_sens
2L	9104481	2L_9104481_SNP [dm3] 2L_9104481_SNP [dm6]	T	A	3.609e^-4	0.822	INTERGENIC
3L	15483291	3L_15483291_SNP [dm3] 3L_15490191_SNP [dm6]	A	T	3.614e^-4	0.822	INTERGENIC
2L	8602199	2L_8602199_SNP [dm3] 2L_8602199_SNP [dm6]	A	C	3.617e^-4	0.822	INTRON Sema-1a
3L	5844025	3L_5844025_INS [dm3] 3L_5850925_INS [dm6]	C	CTGGC	3.621e^-4	0.822	INTERGENIC
3L	7257559	3L_7257559_SNP [dm3] 3L_7264459_SNP [dm6]	G	A	3.623e^-4	0.822	UPSTREAM CG14830 INTERGENIC
2L	9446658	2L_9446658_SNP [dm3] 2L_9446658_SNP [dm6]	A	C	3.627e^-4	0.822	INTRON numb	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	9446659	2L_9446659_SNP [dm3] 2L_9446659_SNP [dm6]	A	C	3.627e^-4	0.822	INTRON numb	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
3L	14489373	3L_14489373_SNP [dm3] 3L_14496273_SNP [dm6]	C	T	3.639e^-4	0.822	INTRON bbg	TF binding site mE1_TFBS_cad
3R	6105532	3R_6105532_SNP [dm3] 3R_10279810_SNP [dm6]	C	T	3.652e^-4	0.822	INTRON CG43143
2L	13875541	2L_13875541_SNP [dm3] 2L_13875541_SNP [dm6]	C	G	3.652e^-4	0.822	INTRON CenG1A
X	14090881	X_14090881_SNP [dm3] X_14196848_SNP [dm6]	T	C	3.660e^-4	0.822	SYNONYMOUS_CODING yl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4933597	2L_4933597_SNP [dm3] 2L_4933597_SNP [dm6]	T	C	3.661e^-4	0.822	SYNONYMOUS_CODING hoe2
2L	7527684	2L_7527684_SNP [dm3] 2L_7527684_SNP [dm6]	A	T	3.661e^-4	0.822	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16706109	3R_16706109_SNP [dm3] 3R_20880387_SNP [dm6]	T	C	3.668e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	11168325	3L_11168325_SNP [dm3] 3L_11175225_SNP [dm6]	T	A	3.681e^-4	0.822	INTRON CG14142
3L	11168332	3L_11168332_SNP [dm3] 3L_11175232_SNP [dm6]	A	T	3.681e^-4	0.822	INTRON CG14142
2R	16923365	2R_16923365_SNP [dm3] 2R_21035860_SNP [dm6]	C	G	3.682e^-4	0.822	INTERGENIC
3L	9694478	3L_9694478_SNP [dm3] 3L_9701378_SNP [dm6]	A	G	3.685e^-4	0.822	DOWNSTREAM UbcD4 INTRON CG6761	TF binding site mE1_TFBS_cad
X	7622376	X_7622376_INS [dm3] X_7728343_INS [dm6]	T	TT	3.688e^-4	0.822	UTR_5_PRIME NELF-B UPSTREAM CG12155	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	20080617	3L_20080617_SNP [dm3] 3L_20087517_SNP [dm6]	A	C	3.698e^-4	0.822	INTRON sNPF-R
X	5538195	X_5538195_SNP [dm3] X_5644162_SNP [dm6]	A	G	3.699e^-4	0.822	INTRON CG42492
2L	10525649	2L_10525649_SNP [dm3] 2L_10525649_SNP [dm6]	T	C	3.703e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14344257	2L_14344257_SNP [dm3] 2L_14344257_SNP [dm6]	C	A	3.705e^-4	0.822	NON_SYNONYMOUS_CODING CG33090
3L	15483209	3L_15483209_SNP [dm3] 3L_15490109_SNP [dm6]	A	G	3.712e^-4	0.822	INTERGENIC
3L	12020149	3L_12020149_SNP [dm3] 3L_12027049_SNP [dm6]	T	C	3.716e^-4	0.822	SYNONYMOUS_CODING rols UPSTREAM CR43994
3R	14381758	3R_14381758_SNP [dm3] 3R_18556036_SNP [dm6]	T	C	3.719e^-4	0.822	INTERGENIC
2L	17255468	2L_17255468_SNP [dm3] 2L_17255468_SNP [dm6]	G	T	3.732e^-4	0.822	INTRON beat-IIIc
3L	1100043	3L_1100043_SNP [dm3] 3L_1100043_SNP [dm6]	C	G	3.741e^-4	0.822	SYNONYMOUS_CODING bab1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9506593	2L_9506593_SNP [dm3] 2L_9506593_SNP [dm6]	G	T	3.748e^-4	0.822	INTRON CG33298
3R	18478605	3R_18478605_SNP [dm3] 3R_22652883_SNP [dm6]	T	A	3.749e^-4	0.822	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15428091	2R_15428091_SNP [dm3] 2R_19540586_SNP [dm6]	C	A	3.750e^-4	0.822	INTRON sm
3L	16354111	3L_16354111_SNP [dm3] 3L_16361011_SNP [dm6]	T	G	3.764e^-4	0.822	INTRON CG45057
X	4098987	X_4098987_SNP [dm3] X_4204954_SNP [dm6]	G	C	3.765e^-4	0.822	INTRON Fas2	TF binding site BDTNP1_TFBS_dl
2L	18813039	2L_18813039_SNP [dm3] 2L_18813039_SNP [dm6]	T	A	3.766e^-4	0.822	UTR_5_PRIME CG42305 & 1 other
3R	4400876	3R_4400876_INS [dm3] 3R_8575154_INS [dm6]	T	TT	3.766e^-4	0.822	INTERGENIC
3R	4934321	3R_4934321_SNP [dm3] 3R_9108599_SNP [dm6]	G	A	3.774e^-4	0.822	INTRON pum
2R	6795353	2R_6795353_SNP [dm3] 2R_10907848_SNP [dm6]	C	T	3.788e^-4	0.822	INTERGENIC
3L	4091291	3L_4091291_SNP [dm3] 3L_4091291_SNP [dm6]	C	A	3.809e^-4	0.822	UTR_3_PRIME CG14989 DOWNSTREAM CG14989
2R	11724772	2R_11724772_SNP [dm3] 2R_15837267_SNP [dm6]	C	T	3.814e^-4	0.822	INTRON tun	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	18464186	X_18464186_SNP [dm3] X_18570153_SNP [dm6]	C	A	3.814e^-4	0.822	INTRON Bx	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
3R	22615421	3R_22615421_SNP [dm3] 3R_26789699_SNP [dm6]	T	A	3.820e^-4	0.822	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	2021719	2L_2021719_SNP [dm3] 2L_2021719_SNP [dm6]	G	A	3.832e^-4	0.822	INTRON CG4238
3L	14489354	3L_14489354_SNP [dm3] 3L_14496254_SNP [dm6]	T	A	3.833e^-4	0.822	INTRON bbg	TF binding site mE1_TFBS_cad
3L	12055437	3L_12055437_SNP [dm3] 3L_12062337_SNP [dm6]	C	G	3.835e^-4	0.822	INTRON rols	TF binding site BDTNP1_TFBS_da
3L	14560642	3L_14560642_SNP [dm3] 3L_14567542_SNP [dm6]	C	A	3.845e^-4	0.822	INTRON CG42758
3L	11168316	3L_11168316_SNP [dm3] 3L_11175216_SNP [dm6]	G	C	3.846e^-4	0.822	INTRON CG14142
3R	19785512	3R_19785512_INS [dm3] 3R_23959790_INS [dm6]	G	GT	3.848e^-4	0.822	INTRON AP-1sigma
3L	8591753	3L_8591753_SNP [dm3] 3L_8598653_SNP [dm6]	G	T	3.848e^-4	0.822	SYNONYMOUS_CODING CG43078 DOWNSTREAM Nelf-E	TF binding site mE1_TFBS_cad
2R	14671796	2R_14671796_SNP [dm3] 2R_18784291_SNP [dm6]	G	A	3.848e^-4	0.822	INTRON CG15080	enhancer mE1_CBP_Enhancers
3L	8908321	3L_8908321_SNP [dm3] 3L_8915221_SNP [dm6]	C	T	3.851e^-4	0.822	UPSTREAM CR43970 INTRON Tsp66E
3L	2646310	3L_2646310_SNP [dm3] 3L_2646310_SNP [dm6]	T	C	3.855e^-4	0.822	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13600160	3R_13600160_INS [dm3] 3R_17774438_INS [dm6]	T	TTTT	3.857e^-4	0.822	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
2L	696649	2L_696649_SNP [dm3] 2L_696649_SNP [dm6]	T	A	3.858e^-4	0.822	INTRON ds	TF binding site mE1_TFBS_Trl
3R	20478904	3R_20478904_SNP [dm3] 3R_24653182_SNP [dm6]	T	C	3.863e^-4	0.822	SYNONYMOUS_CODING ash2 DOWNSTREAM CG31125
X	20561531	X_20561531_SNP [dm3] X_20690504_SNP [dm6]	A	T	3.865e^-4	0.822	UPSTREAM run EXON CR45610	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	7278969	3R_7278969_SNP [dm3] 3R_11453247_SNP [dm6]	A	G	3.866e^-4	0.822	SYNONYMOUS_CODING PGRP-LB INTRON CG17230	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15903314	2R_15903314_SNP [dm3] 2R_20015809_SNP [dm6]	A	C	3.866e^-4	0.822	DOWNSTREAM CR44630 INTERGENIC
3L	837721	3L_837721_SNP [dm3] 3L_837721_SNP [dm6]	C	G	3.879e^-4	0.822	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	11246038	2L_11246038_SNP [dm3] 2L_11246038_SNP [dm6]	A	T	3.880e^-4	0.822	INTRON ab	TF binding site mE1_TFBS_chinmo
2R	16965216	2R_16965216_SNP [dm3] 2R_21077711_SNP [dm6]	A	C	3.880e^-4	0.822	INTRON Treh
3L	5122893	3L_5122893_SNP [dm3] 3L_5129793_SNP [dm6]	T	C	3.883e^-4	0.822	SYNONYMOUS_CODING CG4597
2L	14460423	2L_14460423_SNP [dm3] 2L_14460423_SNP [dm6]	T	A	3.893e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11276731	3L_11276731_SNP [dm3] 3L_11283631_SNP [dm6]	A	G	3.894e^-4	0.822	INTERGENIC
3L	12522429	3L_12522429_SNP [dm3] 3L_12529329_SNP [dm6]	A	G	3.895e^-4	0.822	INTRON nst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	5489798	X_5489798_SNP [dm3] X_5595765_SNP [dm6]	A	T	3.899e^-4	0.822	INTRON Vsx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3L	8885634	3L_8885634_SNP [dm3] 3L_8892534_SNP [dm6]	A	T	3.899e^-4	0.822	SYNONYMOUS_CODING Mcm7	TF binding site BDTNP1_TFBS_twi
3R	25283460	3R_25283460_SNP [dm3] 3R_29457738_SNP [dm6]	A	G	3.906e^-4	0.822	INTRON Ptp99A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	7617541	X_7617541_SNP [dm3] X_7723508_SNP [dm6]	C	A	3.912e^-4	0.822	SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	22018071	3R_22018071_SNP [dm3] 3R_26192349_SNP [dm6]	A	T	3.913e^-4	0.822	INTERGENIC
2R	11327929	2R_11327929_SNP [dm3] 2R_15440424_SNP [dm6]	G	T	3.916e^-4	0.822	INTRON CG43729
3L	10868009	3L_10868009_SNP [dm3] 3L_10874909_SNP [dm6]	C	T	3.924e^-4	0.822	UTR_3_PRIME tna DOWNSTREAM tna	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	5137887	3R_5137887_SNP [dm3] 3R_9312165_SNP [dm6]	A	G	3.925e^-4	0.822	INTRON CG8861
2R	19404101	2R_19404101_SNP [dm3] 2R_23516578_SNP [dm6]	C	G	3.926e^-4	0.822	INTERGENIC
2R	19337409	2R_19337409_SNP [dm3] 2R_23449886_SNP [dm6]	G	A	3.933e^-4	0.822	INTRON CG43795
2R	12510094	2R_12510094_SNP [dm3] 2R_16622589_SNP [dm6]	C	T	3.935e^-4	0.822	INTRON CG5065	TF binding site mE1_TFBS_cad
3L	7105602	3L_7105602_SNP [dm3] 3L_7112502_SNP [dm6]	A	T	3.941e^-4	0.822	INTRON form3
3L	11532947	3L_11532947_SNP [dm3] 3L_11539847_SNP [dm6]	A	G	3.946e^-4	0.822	INTRON Mob2
2R	12389779	2R_12389779_SNP [dm3] 2R_16502274_SNP [dm6]	A	G	3.953e^-4	0.822	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	2707543	2L_2707543_SNP [dm3] 2L_2707543_SNP [dm6]	C	A	3.956e^-4	0.822	INTRON CG31690
3R	24132597	3R_24132597_SNP [dm3] 3R_28306875_SNP [dm6]	A	T	3.968e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	16688318	2R_16688318_SNP [dm3] 2R_20800813_SNP [dm6]	A	G	3.969e^-4	0.822	INTERGENIC
3L	677254	3L_677254_SNP [dm3] 3L_677254_SNP [dm6]	T	A	3.970e^-4	0.822	DOWNSTREAM CG17129 INTERGENIC
3R	10437015	3R_10437015_SNP [dm3] 3R_14611293_SNP [dm6]	A	T	3.990e^-4	0.822	INTRON CG14853
2L	19825314	2L_19825314_SNP [dm3] 2L_19825314_SNP [dm6]	G	A	3.997e^-4	0.822	INTRON sick
2L	18487635	2L_18487635_SNP [dm3] 2L_18487635_SNP [dm6]	T	G	4.020e^-4	0.822	UTR_3_PRIME CG10176 DOWNSTREAM kon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	21388373	2L_21388373_SNP [dm3] 2L_21388373_SNP [dm6]	T	C	4.024e^-4	0.822	INTRON nrv3
3R	6253304	3R_6253304_SNP [dm3] 3R_10427582_SNP [dm6]	C	A	4.033e^-4	0.822	INTERGENIC
2R	7902194	2R_7902194_SNP [dm3] 2R_12014689_SNP [dm6]	T	G	4.038e^-4	0.822	UPSTREAM CR44306 INTRON otk
3R	6105593	3R_6105593_SNP [dm3] 3R_10279871_SNP [dm6]	C	T	4.042e^-4	0.822	INTRON CG43143
2R	16389978	2R_16389978_SNP [dm3] 2R_20502473_SNP [dm6]	G	T	4.046e^-4	0.822	INTERGENIC	regulatory region REDfly_CRMs
3L	4950263	3L_4950263_SNP [dm3] 3L_4950263_SNP [dm6]	C	T	4.049e^-4	0.822	INTRON Con	TF binding site mE1_TFBS_chinmo
2R	11571818	2R_11571818_SNP [dm3] 2R_15684313_SNP [dm6]	C	T	4.056e^-4	0.822	SYNONYMOUS_CODING Ranbp11 DOWNSTREAM CG30082 EXON CR43429	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17684793	3R_17684793_SNP [dm3] 3R_21859071_SNP [dm6]	A	C	4.057e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14030411	3R_14030411_SNP [dm3] 3R_18204689_SNP [dm6]	G	A	4.058e^-4	0.822	INTRON CG7985
2R	9147063	2R_9147063_SNP [dm3] 2R_13259558_SNP [dm6]	G	A	4.066e^-4	0.822	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
X	892036	X_892036_SNP [dm3] X_998003_SNP [dm6]	T	A	4.066e^-4	0.822	INTERGENIC
2R	16723021	2R_16723021_DEL [dm3] 2R_20835516_DEL [dm6]	ACA	A	4.073e^-4	0.822	INTRON insc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	455074	3L_455074_SNP [dm3] 3L_455074_SNP [dm6]	C	T	4.076e^-4	0.822	INTRON klar
3L	3103926	3L_3103926_SNP [dm3] 3L_3103926_SNP [dm6]	C	T	4.080e^-4	0.822	INTRON Cht7
2R	20789054	2R_20789054_SNP [dm3] 2R_24901531_SNP [dm6]	C	T	4.084e^-4	0.822	UPSTREAM Tpc2 INTRON NaCP60E	TF binding site mE1_TFBS_HSA
2R	20946385	2R_20946385_SNP [dm3] 2R_25058862_SNP [dm6]	A	G	4.085e^-4	0.822	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3L	7257565	3L_7257565_SNP [dm3] 3L_7264465_SNP [dm6]	C	T	4.086e^-4	0.822	UPSTREAM CG14830 INTERGENIC
3L	14954972	3L_14954972_SNP [dm3] 3L_14961872_SNP [dm6]	A	G	4.091e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19435034	3R_19435034_SNP [dm3] 3R_23609312_SNP [dm6]	C	G	4.095e^-4	0.822	INTRON CG31145
3L	11843819	3L_11843819_SNP [dm3] 3L_11850719_SNP [dm6]	A	C	4.105e^-4	0.822	UTR_3_PRIME CG44837
X	11321111	X_11321111_SNP [dm3] X_11427078_SNP [dm6]	C	G	4.111e^-4	0.822	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10852647	3L_10852647_SNP [dm3] 3L_10859547_SNP [dm6]	T	A	4.123e^-4	0.822	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_kn
3R	18780272	3R_18780272_SNP [dm3] 3R_22954550_SNP [dm6]	A	G	4.127e^-4	0.822	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	11724954	2R_11724954_SNP [dm3] 2R_15837449_SNP [dm6]	A	G	4.133e^-4	0.822	INTRON tun	regulatory region REDfly_CRMs
X	6710006	X_6710006_SNP [dm3] X_6815973_SNP [dm6]	T	C	4.135e^-4	0.822	SPLICE_SITE_REGION iav INTRON iav
3L	16691072	3L_16691072_DEL [dm3] 3L_16697972_DEL [dm6]	AA	A	4.137e^-4	0.822	DOWNSTREAM CR45179 INTRON Lasp & 1 other
3L	7721452	3L_7721452_SNP [dm3] 3L_7728352_SNP [dm6]	A	G	4.140e^-4	0.822	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
3L	10691472	3L_10691472_SNP [dm3] 3L_10698372_SNP [dm6]	T	A	4.146e^-4	0.822	INTERGENIC
3L	14835301	3L_14835301_SNP [dm3] 3L_14842201_SNP [dm6]	T	A	4.147e^-4	0.822	INTRON CG17839
2L	19835455	2L_19835455_SNP [dm3] 2L_19835455_SNP [dm6]	A	C	4.151e^-4	0.822	INTRON sick
3L	11846523	3L_11846523_SNP [dm3] 3L_11853423_SNP [dm6]	T	G	4.152e^-4	0.822	INTRON CG44837
3R	6299522	3R_6299522_SNP [dm3] 3R_10473800_SNP [dm6]	C	T	4.152e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9621573	X_9621573_SNP [dm3] X_9727540_SNP [dm6]	A	C	4.153e^-4	0.822	DOWNSTREAM CR43498 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9555349	3L_9555349_SNP [dm3] 3L_9562249_SNP [dm6]	A	G	4.174e^-4	0.822	INTRON CG42673
3R	13582492	3R_13582492_SNP [dm3] 3R_17756770_SNP [dm6]	T	G	4.181e^-4	0.822	INTRON TyrR	TF binding site mE1_TFBS_chinmo
X	8633631	X_8633631_SNP [dm3] X_8739598_SNP [dm6]	T	C	4.184e^-4	0.822	INTERGENIC
2L	4147037	2L_4147037_SNP [dm3] 2L_4147037_SNP [dm6]	A	T	4.187e^-4	0.822	INTERGENIC
2L	2324325	2L_2324325_INS [dm3] 2L_2324325_INS [dm6]	A	AGAGAGGGCTAATA...	4.196e^-4	0.822	INTRON CG9967 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13682812	3R_13682812_SNP [dm3] 3R_17857090_SNP [dm6]	G	C	4.198e^-4	0.822	INTRON tinc
3L	412168	3L_412168_SNP [dm3] 3L_412168_SNP [dm6]	G	A	4.206e^-4	0.822	INTERGENIC
3R	23339779	3R_23339779_SNP [dm3] 3R_27514057_SNP [dm6]	A	G	4.211e^-4	0.822	INTERGENIC
3R	10436834	3R_10436834_SNP [dm3] 3R_14611112_SNP [dm6]	G	A	4.218e^-4	0.822	INTRON CG14853
X	4091100	X_4091100_SNP [dm3] X_4197067_SNP [dm6]	G	C	4.221e^-4	0.822	INTRON Fas2
X	11409369	X_11409369_SNP [dm3] X_11515336_SNP [dm6]	T	G	4.221e^-4	0.822	INTRON Drak	TF binding site mE1_TFBS_Kr
2L	7934932	2L_7934932_SNP [dm3] 2L_7934932_SNP [dm6]	A	C	4.226e^-4	0.822	INTRON Snoo
2R	7045208	2R_7045208_SNP [dm3] 2R_11157703_SNP [dm6]	C	A	4.228e^-4	0.822	INTRON CG13229
3R	7331866	3R_7331866_SNP [dm3] 3R_11506144_SNP [dm6]	C	T	4.232e^-4	0.822	DOWNSTREAM dpr5 INTERGENIC
3L	468215	3L_468215_SNP [dm3] 3L_468215_SNP [dm6]	A	G	4.234e^-4	0.822	INTRON klar
X	8628993	X_8628993_SNP [dm3] X_8734960_SNP [dm6]	G	A	4.237e^-4	0.822	INTERGENIC
2R	7408586	2R_7408586_SNP [dm3] 2R_11521081_SNP [dm6]	C	T	4.242e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4322090	2L_4322090_DEL [dm3] 2L_4322090_DEL [dm6]	CCAATCCC	C	4.243e^-4	0.822	UTR_3_PRIME tutl DOWNSTREAM tutl	TF binding site mE1_TFBS_HSA
3R	25391719	3R_25391719_DEL [dm3] 3R_29565997_DEL [dm6]	GTGG	G	4.244e^-4	0.822	DOWNSTREAM Dr INTERGENIC
2L	14043664	2L_14043664_SNP [dm3] 2L_14043664_SNP [dm6]	T	C	4.244e^-4	0.822	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1714333	3L_1714333_SNP [dm3] 3L_1714333_SNP [dm6]	A	G	4.272e^-4	0.822	SYNONYMOUS_CODING CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2645026	3L_2645026_SNP [dm3] 3L_2645026_SNP [dm6]	T	A	4.288e^-4	0.822	UPSTREAM CG1143 INTERGENIC
2R	16688646	2R_16688646_SNP [dm3] 2R_20801141_SNP [dm6]	G	C	4.289e^-4	0.822	INTERGENIC
3L	4011471	3L_4011471_SNP [dm3] 3L_4011471_SNP [dm6]	A	C	4.289e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3265646	2R_3265646_SNP [dm3] 2R_7378141_SNP [dm6]	G	C	4.291e^-4	0.822	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
2R	18278806	2R_18278806_SNP [dm3] 2R_22391301_SNP [dm6]	A	G	4.299e^-4	0.822	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6951579	2R_6951579_SNP [dm3] 2R_11064074_SNP [dm6]	A	G	4.299e^-4	0.822	INTRON luna	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14270848	2L_14270848_SNP [dm3] 2L_14270848_SNP [dm6]	G	C	4.303e^-4	0.822	INTRON wb
3R	25765280	3R_25765280_SNP [dm3] 3R_29939558_SNP [dm6]	T	A	4.305e^-4	0.822	NON_SYNONYMOUS_CODING CG15523
3R	18480164	3R_18480164_SNP [dm3] 3R_22654442_SNP [dm6]	C	T	4.305e^-4	0.822	INTRON CG45058
2R	11530467	2R_11530467_SNP [dm3] 2R_15642962_SNP [dm6]	T	A	4.306e^-4	0.822	INTRON CG42524
2R	16303177	2R_16303177_SNP [dm3] 2R_20415672_SNP [dm6]	C	T	4.309e^-4	0.822	INTERGENIC
3L	9483255	3L_9483255_SNP [dm3] 3L_9490155_SNP [dm6]	T	C	4.320e^-4	0.822	UTR_3_PRIME CG32037 UPSTREAM CG32036	TF binding site mE1_TFBS_cad
2L	18871864	2L_18871864_SNP [dm3] 2L_18871864_SNP [dm6]	C	T	4.323e^-4	0.822	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24831732	3R_24831732_SNP [dm3] 3R_29006010_SNP [dm6]	G	C	4.327e^-4	0.822	INTRON wat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	21775574	2L_21775574_INS [dm3] 2L_21775574_INS [dm6]	A	ATC	4.331e^-4	0.822	INTRON CG31612	TF binding site mE1_TFBS_HSA transposable element FlyBase
X	18402742	X_18402742_SNP [dm3] X_18508709_SNP [dm6]	A	G	4.334e^-4	0.822	INTRON Ggt-1	TF binding site mE1_TFBS_chinmo mE1_TFBS_cnc
3L	2644985	3L_2644985_SNP [dm3] 3L_2644985_SNP [dm6]	T	A	4.334e^-4	0.822	UPSTREAM CG1143 INTERGENIC
3L	9512504	3L_9512504_SNP [dm3] 3L_9519404_SNP [dm6]	A	T	4.337e^-4	0.822	INTRON CG33700
3R	10436773	3R_10436773_SNP [dm3] 3R_14611051_SNP [dm6]	A	C	4.342e^-4	0.822	INTRON CG14853
2L	7365708	2L_7365708_SNP [dm3] 2L_7365708_SNP [dm6]	C	T	4.355e^-4	0.822	INTRON Wnt10
X	7619130	X_7619130_SNP [dm3] X_7725097_SNP [dm6]	T	A	4.363e^-4	0.822	DOWNSTREAM NELF-B INTRON Hira	TF binding site mE1_TFBS_sens
2L	19816601	2L_19816601_SNP [dm3] 2L_19816601_SNP [dm6]	G	T	4.367e^-4	0.822	UPSTREAM snRNA:U2:38ABa DOWNSTREAM snRNA:U5:38ABb INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	16242822	2R_16242822_SNP [dm3] 2R_20355317_SNP [dm6]	G	T	4.368e^-4	0.822	UPSTREAM CG11192 INTERGENIC	TF binding site mE1_TFBS_cad
X	7613947	X_7613947_SNP [dm3] X_7719914_SNP [dm6]	C	T	4.377e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18010238	2R_18010238_SNP [dm3] 2R_22122733_SNP [dm6]	C	T	4.377e^-4	0.822	UPSTREAM mei-S332 & 1 other INTRON mei-S332	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12663420	X_12663420_SNP [dm3] X_12769387_SNP [dm6]	T	C	4.380e^-4	0.822	INTRON CG3812	TF binding site BDTNP1_TFBS_twi
3L	6839225	3L_6839225_SNP [dm3] 3L_6846125_SNP [dm6]	A	G	4.381e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	15154149	3R_15154149_SNP [dm3] 3R_19328427_SNP [dm6]	A	T	4.382e^-4	0.822	UPSTREAM CR44175 INTERGENIC
3R	18758721	3R_18758721_SNP [dm3] 3R_22932999_SNP [dm6]	G	A	4.389e^-4	0.822	INTRON klg
X	13696586	X_13696586_DEL [dm3] X_13802553_DEL [dm6]	AAGTTAATTCA...	A	4.391e^-4	0.822	INTRON inaE
X	7622608	X_7622608_SNP [dm3] X_7728575_SNP [dm6]	G	C	4.392e^-4	0.822	UPSTREAM CG12155 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	9423724	X_9423724_SNP [dm3] X_9529691_SNP [dm6]	C	A	4.394e^-4	0.822	INTRON CG32700
2L	22909511	2L_22909511_SNP [dm3] 2L_23016779_SNP [dm6]	G	A	4.403e^-4	0.822	INTRON Cht3
3R	20347647	3R_20347647_SNP [dm3] 3R_24521925_SNP [dm6]	T	C	4.418e^-4	0.822	UTR_3_PRIME Pp1alpha-96A DOWNSTREAM Pp1alpha-96A & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8151058	2R_8151058_SNP [dm3] 2R_12263553_SNP [dm6]	G	A	4.422e^-4	0.822	UPSTREAM Cam INTRON Cam
2R	11849590	2R_11849590_SNP [dm3] 2R_15962085_SNP [dm6]	T	G	4.423e^-4	0.822	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13556727	2R_13556727_SNP [dm3] 2R_17669222_SNP [dm6]	A	T	4.424e^-4	0.822	UTR_3_PRIME eIF3-S8 UPSTREAM CG30108 & 1 other DOWNSTREAM eIF3-S8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
2L	939164	2L_939164_SNP [dm3] 2L_939164_SNP [dm6]	T	C	4.430e^-4	0.822	INTRON CG4341	TF binding site mE1_TFBS_chinmo
2R	16688595	2R_16688595_SNP [dm3] 2R_20801090_SNP [dm6]	A	T	4.434e^-4	0.822	INTERGENIC
3L	837739	3L_837739_INS [dm3] 3L_837739_INS [dm6]	T	TA	4.434e^-4	0.822	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	11900217	3L_11900217_SNP [dm3] 3L_11907117_SNP [dm6]	T	G	4.436e^-4	0.822	INTRON CG44837
3L	14385307	3L_14385307_SNP [dm3] 3L_14392207_SNP [dm6]	A	G	4.439e^-4	0.822	INTERGENIC
3L	10025750	3L_10025750_SNP [dm3] 3L_10032650_SNP [dm6]	G	A	4.441e^-4	0.822	INTRON dpr6
X	5055388	X_5055388_SNP [dm3] X_5161355_SNP [dm6]	C	A	4.445e^-4	0.822	INTRON rg & 1 other
3R	25287731	3R_25287731_DEL [dm3] 3R_29462009_DEL [dm6]	CACACAC	C	4.449e^-4	0.822	UTR_5_PRIME Ptp99A INTRON Ptp99A	TF binding site BDTNP1_TFBS_twi
2R	12678631	2R_12678631_SNP [dm3] 2R_16791126_SNP [dm6]	G	A	4.450e^-4	0.822	SYNONYMOUS_CODING CG5522	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	1101004	3L_1101004_SNP [dm3] 3L_1101004_SNP [dm6]	C	T	4.461e^-4	0.822	UTR_5_PRIME bab1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2R	15903310	2R_15903310_DEL [dm3] 2R_20015805_DEL [dm6]	TGA	T	4.464e^-4	0.822	DOWNSTREAM CR44630 INTERGENIC
2L	9853732	2L_9853732_SNP [dm3] 2L_9853732_SNP [dm6]	A	T	4.467e^-4	0.822	INTRON nAChRalpha6
X	5440782	X_5440782_SNP [dm3] X_5546749_SNP [dm6]	T	C	4.467e^-4	0.822	SYNONYMOUS_CODING Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	7622632	X_7622632_SNP [dm3] X_7728599_SNP [dm6]	A	G	4.475e^-4	0.822	UPSTREAM CG12155 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	5901184	2L_5901184_SNP [dm3] 2L_5901184_SNP [dm6]	G	T	4.477e^-4	0.822	UPSTREAM CR44579 INTERGENIC
X	17947626	X_17947626_SNP [dm3] X_18053593_SNP [dm6]	G	A	4.477e^-4	0.822	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11251263	2R_11251263_SNP [dm3] 2R_15363758_SNP [dm6]	T	A	4.479e^-4	0.822	INTRON unc-5
2L	7100403	2L_7100403_SNP [dm3] 2L_7100403_SNP [dm6]	G	A	4.480e^-4	0.822	SYNONYMOUS_CODING Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	3207502	2R_3207502_SNP [dm3] 2R_7319997_SNP [dm6]	C	T	4.484e^-4	0.822	UTR_3_PRIME Dscam1
X	6993925	X_6993925_SNP [dm3] X_7099892_SNP [dm6]	C	A	4.488e^-4	0.822	SYNONYMOUS_CODING CG4615	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9147435	2R_9147435_SNP [dm3] 2R_13259930_SNP [dm6]	T	A	4.494e^-4	0.822	UPSTREAM CG42319 INTERGENIC
3L	14925736	3L_14925736_INS [dm3] 3L_14932636_INS [dm6]	T	CAGCGGAG	4.496e^-4	0.822	INTRON DCX-EMAP
X	13137038	X_13137038_SNP [dm3] X_13243005_SNP [dm6]	A	G	4.496e^-4	0.822	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	16341636	X_16341636_DEL [dm3] X_16447603_DEL [dm6]	TGACAGCGCGCGAGTACAA...	T	4.498e^-4	0.822	UTR_3_PRIME CG34015 UPSTREAM eIF-2alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7612558	X_7612558_SNP [dm3] X_7718525_SNP [dm6]	A	G	4.504e^-4	0.822	UPSTREAM CG15478 INTERGENIC
3L	1523002	3L_1523002_SNP [dm3] 3L_1523002_SNP [dm6]	G	A	4.505e^-4	0.822	UTR_3_PRIME Psa DOWNSTREAM CG12090	TF binding site mE1_TFBS_cad

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.044e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.07068
In_3R_K	0.04896

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.8893	0.0526
In_3R_K	7.0087	0.0301

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2034 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	3680402	3L_3680402_SNP [dm3] 3L_3680402_SNP [dm6]	T	C	7.289e^-7	0.839	INTERGENIC
3R	27128046	3R_27128046_SNP [dm3] 3R_31302324_SNP [dm6]	C	T	1.648e^-6	0.839	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_inv
2R	12696827	2R_12696827_SNP [dm3] 2R_16809322_SNP [dm6]	C	A	2.041e^-6	0.839	INTERGENIC
2R	15697740	2R_15697740_SNP [dm3] 2R_19810235_SNP [dm6]	T	G	2.339e^-6	0.839	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	18663595	3L_18663595_SNP [dm3] 3L_18670495_SNP [dm6]	T	C	2.756e^-6	0.839	SYNONYMOUS_CODING Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	13570329	3R_13570329_SNP [dm3] 3R_17744607_SNP [dm6]	A	C	3.053e^-6	0.839	INTRON TyrRII	TF binding site mE1_TFBS_cad
3R	6253276	3R_6253276_SNP [dm3] 3R_10427554_SNP [dm6]	G	A	3.185e^-6	0.839	INTERGENIC
3L	16983394	3L_16983394_SNP [dm3] 3L_16990294_SNP [dm6]	C	A	4.463e^-6	0.839	INTRON Exn
3L	14813948	3L_14813948_SNP [dm3] 3L_14820848_SNP [dm6]	G	A	4.605e^-6	0.839	INTRON CG17839
3L	7777439	3L_7777439_SNP [dm3] 3L_7784339_SNP [dm6]	C	T	5.485e^-6	0.839	INTRON CG32369
3L	16983298	3L_16983298_INS [dm3] 3L_16990198_INS [dm6]	A	AG	5.874e^-6	0.839	INTRON Exn
2L	3997257	2L_3997257_INS [dm3] 2L_3997257_INS [dm6]	T	TGA	6.166e^-6	0.839	INTERGENIC
2R	6795339	2R_6795339_SNP [dm3] 2R_10907834_SNP [dm6]	G	T	6.267e^-6	0.839	INTERGENIC
2R	6795340	2R_6795340_SNP [dm3] 2R_10907835_SNP [dm6]	A	G	6.507e^-6	0.839	INTERGENIC
3L	8391972	3L_8391972_SNP [dm3] 3L_8398872_SNP [dm6]	A	T	6.799e^-6	0.839	INTRON CG7120
3L	8391974	3L_8391974_SNP [dm3] 3L_8398874_SNP [dm6]	G	A	7.897e^-6	0.839	INTRON CG7120
3L	14376180	3L_14376180_SNP [dm3] 3L_14383080_SNP [dm6]	C	T	8.338e^-6	0.839	UTR_3_PRIME CG43120
X	18464186	X_18464186_SNP [dm3] X_18570153_SNP [dm6]	C	A	8.693e^-6	0.839	INTRON Bx	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
2R	11251263	2R_11251263_SNP [dm3] 2R_15363758_SNP [dm6]	T	A	9.468e^-6	0.839	INTRON unc-5
3L	2645081	3L_2645081_SNP [dm3] 3L_2645081_SNP [dm6]	A	G	9.681e^-6	0.839	UPSTREAM CG1143 INTERGENIC
X	12850971	X_12850971_SNP [dm3] X_12956938_SNP [dm6]	G	T	1.046e^-5	0.839	INTRON hec
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	1.052e^-5	0.839	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2645067	3L_2645067_SNP [dm3] 3L_2645067_SNP [dm6]	C	T	1.139e^-5	0.839	UPSTREAM CG1143 INTERGENIC
3L	11276731	3L_11276731_SNP [dm3] 3L_11283631_SNP [dm6]	A	G	1.253e^-5	0.839	INTERGENIC
3L	3090995	3L_3090995_SNP [dm3] 3L_3090995_SNP [dm6]	C	T	1.336e^-5	0.839	UTR_3_PRIME Cht7 DOWNSTREAM CG11486 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	1.439e^-5	0.839	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2644985	3L_2644985_SNP [dm3] 3L_2644985_SNP [dm6]	T	A	1.543e^-5	0.839	UPSTREAM CG1143 INTERGENIC
3L	11599845	3L_11599845_SNP [dm3] 3L_11606745_SNP [dm6]	T	C	1.553e^-5	0.839	SYNONYMOUS_CODING CG6091
2R	13415564	2R_13415564_SNP [dm3] 2R_17528059_SNP [dm6]	G	A	1.625e^-5	0.839	SYNONYMOUS_CODING Patronin
3L	7156753	3L_7156753_SNP [dm3] 3L_7163653_SNP [dm6]	G	A	1.625e^-5	0.839	INTRON Dscam2
3L	7156769	3L_7156769_SNP [dm3] 3L_7163669_SNP [dm6]	G	A	1.625e^-5	0.839	INTRON Dscam2
2R	13950559	2R_13950559_SNP [dm3] 2R_18063054_SNP [dm6]	A	T	1.671e^-5	0.839	INTRON CG34386
3L	10756244	3L_10756244_SNP [dm3] 3L_10763144_SNP [dm6]	A	G	1.685e^-5	0.839	INTERGENIC
3L	18662988	3L_18662988_INS [dm3] 3L_18669888_INS [dm6]	G	GCTG	1.762e^-5	0.839	CODON_INSERTION Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	19007092	2R_19007092_SNP [dm3] 2R_23119569_SNP [dm6]	G	T	1.880e^-5	0.839	INTERGENIC
3L	9661340	3L_9661340_SNP [dm3] 3L_9668240_SNP [dm6]	C	G	1.903e^-5	0.839	INTRON fry	TF binding site mE1_TFBS_cad
3L	2644981	3L_2644981_SNP [dm3] 3L_2644981_SNP [dm6]	A	T	1.956e^-5	0.839	UPSTREAM CG1143 INTERGENIC
3L	7072423	3L_7072423_SNP [dm3] 3L_7079323_SNP [dm6]	C	A	2.014e^-5	0.839	INTERGENIC
2R	13739800	2R_13739800_SNP [dm3] 2R_17852295_SNP [dm6]	G	T	2.109e^-5	0.839	UPSTREAM CG30323 INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8402577	X_8402577_SNP [dm3] X_8508544_SNP [dm6]	G	A	2.213e^-5	0.839	INTRON CG33181
2L	7202015	2L_7202015_SNP [dm3] 2L_7202015_SNP [dm6]	C	A	2.236e^-5	0.839	INTRON CG4502
2R	9147038	2R_9147038_SNP [dm3] 2R_13259533_SNP [dm6]	G	A	2.284e^-5	0.839	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2L	8696998	2L_8696998_SNP [dm3] 2L_8696998_SNP [dm6]	C	G	2.312e^-5	0.839	INTRON Hnf4	TF binding site mE1_TFBS_cnc
2L	5544938	2L_5544938_SNP [dm3] 2L_5544938_SNP [dm6]	A	T	2.327e^-5	0.839	SYNONYMOUS_CODING Lam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	2645044	3L_2645044_SNP [dm3] 3L_2645044_SNP [dm6]	T	G	2.528e^-5	0.839	UPSTREAM CG1143 INTERGENIC
3R	6253307	3R_6253307_SNP [dm3] 3R_10427585_SNP [dm6]	G	T	2.655e^-5	0.839	INTERGENIC
2R	9147010	2R_9147010_SNP [dm3] 2R_13259505_SNP [dm6]	T	G	2.667e^-5	0.839	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2R	13415561	2R_13415561_SNP [dm3] 2R_17528056_SNP [dm6]	A	G	2.685e^-5	0.839	SYNONYMOUS_CODING Patronin
2R	16289150	2R_16289150_SNP [dm3] 2R_20401645_SNP [dm6]	G	A	2.717e^-5	0.839	INTERGENIC
2R	9147009	2R_9147009_SNP [dm3] 2R_13259504_SNP [dm6]	T	G	2.737e^-5	0.839	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2R	9147155	2R_9147155_SNP [dm3] 2R_13259650_SNP [dm6]	A	T	2.747e^-5	0.839	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2L	2279895	2L_2279895_SNP [dm3] 2L_2279895_SNP [dm6]	G	A	2.837e^-5	0.839	UPSTREAM CR43753 INTERGENIC
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	2.883e^-5	0.839	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
2L	8697403	2L_8697403_SNP [dm3] 2L_8697403_SNP [dm6]	T	G	2.905e^-5	0.839	INTRON Hnf4
2R	7961237	2R_7961237_SNP [dm3] 2R_12073732_SNP [dm6]	G	A	2.964e^-5	0.839	INTRON CG8888
2L	2922161	2L_2922161_SNP [dm3] 2L_2922161_SNP [dm6]	T	A	2.984e^-5	0.839	INTRON lilli
2R	9147422	2R_9147422_SNP [dm3] 2R_13259917_SNP [dm6]	A	T	2.997e^-5	0.839	UPSTREAM CG42319 INTERGENIC
2R	11724908	2R_11724908_SNP [dm3] 2R_15837403_SNP [dm6]	C	T	3.040e^-5	0.839	INTRON tun	regulatory region REDfly_CRMs
3R	9959340	3R_9959340_SNP [dm3] 3R_14133618_SNP [dm6]	C	T	3.057e^-5	0.839	INTERGENIC
3L	18663271	3L_18663271_SNP [dm3] 3L_18670171_SNP [dm6]	T	C	3.067e^-5	0.839	SYNONYMOUS_CODING Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	3381344	X_3381344_SNP [dm3] X_3487311_SNP [dm6]	T	C	3.078e^-5	0.839	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_sens
3L	11276715	3L_11276715_SNP [dm3] 3L_11283615_SNP [dm6]	A	C	3.102e^-5	0.839	INTERGENIC
3L	11276725	3L_11276725_SNP [dm3] 3L_11283625_SNP [dm6]	A	T	3.102e^-5	0.839	INTERGENIC
3L	412023	3L_412023_SNP [dm3] 3L_412023_SNP [dm6]	G	T	3.147e^-5	0.839	INTERGENIC
X	2926031	X_2926031_SNP [dm3] X_3031998_SNP [dm6]	C	A	3.152e^-5	0.839	INTRON kirre
3L	2645041	3L_2645041_SNP [dm3] 3L_2645041_SNP [dm6]	G	T	3.207e^-5	0.839	UPSTREAM CG1143 INTERGENIC
2R	11327929	2R_11327929_SNP [dm3] 2R_15440424_SNP [dm6]	G	T	3.343e^-5	0.839	INTRON CG43729
3L	743080	3L_743080_SNP [dm3] 3L_743080_SNP [dm6]	T	A	3.370e^-5	0.839	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	20946369	2R_20946369_SNP [dm3] 2R_25058846_SNP [dm6]	C	T	3.460e^-5	0.839	INTERGENIC	regulatory region FlyBase REDfly_CRMs
2R	9147034	2R_9147034_SNP [dm3] 2R_13259529_SNP [dm6]	G	T	3.514e^-5	0.839	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3R	5145048	3R_5145048_SNP [dm3] 3R_9319326_SNP [dm6]	G	A	3.541e^-5	0.839	INTRON CG8861
3L	2645026	3L_2645026_SNP [dm3] 3L_2645026_SNP [dm6]	T	A	3.567e^-5	0.839	UPSTREAM CG1143 INTERGENIC
3R	13600672	3R_13600672_SNP [dm3] 3R_17774950_SNP [dm6]	C	T	3.592e^-5	0.839	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18463732	X_18463732_SNP [dm3] X_18569699_SNP [dm6]	A	G	3.624e^-5	0.839	INTRON Bx	TF binding site BDTNP1_TFBS_da
2R	7961258	2R_7961258_SNP [dm3] 2R_12073753_SNP [dm6]	A	G	3.630e^-5	0.839	INTRON CG8888
X	21160844	X_21160844_SNP [dm3] X_21289817_SNP [dm6]	G	C	3.675e^-5	0.839	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	742989	3L_742989_SNP [dm3] 3L_742989_SNP [dm6]	C	A	3.678e^-5	0.839	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	6105630	3R_6105630_SNP [dm3] 3R_10279908_SNP [dm6]	T	A	3.736e^-5	0.839	INTRON CG43143
3R	14660016	3R_14660016_SNP [dm3] 3R_18834294_SNP [dm6]	G	A	3.757e^-5	0.839	INTRON CG18208
2R	6606992	2R_6606992_SNP [dm3] 2R_10719487_SNP [dm6]	A	T	3.787e^-5	0.839	INTRON stan
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	3.850e^-5	0.839	EXON CR44950
2L	9430498	2L_9430498_SNP [dm3] 2L_9430498_SNP [dm6]	T	A	3.855e^-5	0.839	UPSTREAM FucTB & 1 other INTRON FucTB
2R	19008611	2R_19008611_SNP [dm3] 2R_23121088_SNP [dm6]	G	A	3.952e^-5	0.839	INTERGENIC
2L	15281202	2L_15281202_DEL [dm3] 2L_15281202_DEL [dm6]	CC	T	4.003e^-5	0.839	DOWNSTREAM CR45349 INTERGENIC
3L	4556796	3L_4556796_INS [dm3] 3L_4556796_INS [dm6]	T	TA	4.038e^-5	0.839	UPSTREAM CG42540 INTRON CG42540
2L	21921535	2L_21921535_SNP [dm3] 2L_21921535_SNP [dm6]	T	C	4.046e^-5	0.839	INTERGENIC
3L	2645600	3L_2645600_SNP [dm3] 3L_2645600_SNP [dm6]	A	T	4.111e^-5	0.839	INTRON CG1143	TF binding site mE1_TFBS_cad
3L	5886015	3L_5886015_SNP [dm3] 3L_5892915_SNP [dm6]	C	G	4.112e^-5	0.839	INTERGENIC
3R	25759599	3R_25759599_SNP [dm3] 3R_29933877_SNP [dm6]	C	T	4.131e^-5	0.839	NON_SYNONYMOUS_CODING CG42557 START_GAINED CG42558 UTR_5_PRIME CG42558 UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6105638	3R_6105638_DEL [dm3] 3R_10279916_DEL [dm6]	ATGACTCCA	A	4.182e^-5	0.839	INTRON CG43143
X	17014026	X_17014026_SNP [dm3] X_17119993_SNP [dm6]	C	T	4.191e^-5	0.839	INTRON CG5004
X	3380974	X_3380974_SNP [dm3] X_3486941_SNP [dm6]	G	A	4.199e^-5	0.839	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3381085	X_3381085_SNP [dm3] X_3487052_SNP [dm6]	G	C	4.199e^-5	0.839	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12400793	2R_12400793_SNP [dm3] 2R_16513288_SNP [dm6]	C	G	4.216e^-5	0.839	INTRON Sema-2a
2R	9147482	2R_9147482_SNP [dm3] 2R_13259977_SNP [dm6]	A	G	4.337e^-5	0.839	UPSTREAM CG42319 INTERGENIC
X	9814806	X_9814806_DEL [dm3] X_9920773_DEL [dm6]	TT	T	4.374e^-5	0.839	INTERGENIC
3L	9661317	3L_9661317_SNP [dm3] 3L_9668217_SNP [dm6]	A	G	4.410e^-5	0.839	INTRON fry	TF binding site mE1_TFBS_cad
X	12772793	X_12772793_SNP [dm3] X_12878760_SNP [dm6]	T	A	4.413e^-5	0.839	INTRON Pde9
3L	11791042	3L_11791042_SNP [dm3] 3L_11797942_SNP [dm6]	A	G	4.429e^-5	0.839	SYNONYMOUS_CODING Klp68D	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8807137	2L_8807137_SNP [dm3] 2L_8807137_SNP [dm6]	T	C	4.499e^-5	0.844	INTERGENIC
X	21160839	X_21160839_SNP [dm3] X_21289812_SNP [dm6]	T	C	4.592e^-5	0.849	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14932148	2R_14932148_DEL [dm3] 2R_19044643_DEL [dm6]	AA	A	4.620e^-5	0.849	INTERGENIC
2R	14646889	2R_14646889_SNP [dm3] 2R_18759384_SNP [dm6]	C	T	4.692e^-5	0.849	SPLICE_SITE_REGION Jabba INTRON Jabba
3L	4556778	3L_4556778_SNP [dm3] 3L_4556778_SNP [dm6]	A	C	4.712e^-5	0.849	UPSTREAM CG42540 INTRON CG42540
3R	18909679	3R_18909679_SNP [dm3] 3R_23083957_SNP [dm6]	C	A	4.832e^-5	0.853	INTRON CG13830	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1042784	3L_1042784_SNP [dm3] 3L_1042784_SNP [dm6]	G	A	4.867e^-5	0.853	INTRON bab1
2R	10998493	2R_10998493_SNP [dm3] 2R_15110988_SNP [dm6]	A	G	4.937e^-5	0.853	INTERGENIC
2R	9147218	2R_9147218_SNP [dm3] 2R_13259713_SNP [dm6]	T	A	4.961e^-5	0.853	UPSTREAM CG42319 INTERGENIC
3L	14057292	3L_14057292_SNP [dm3] 3L_14064192_SNP [dm6]	C	T	5.225e^-5	0.853	INTRON CG32138	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	12264143	X_12264143_SNP [dm3] X_12370110_SNP [dm6]	C	A	5.237e^-5	0.853	INTERGENIC
3R	6105689	3R_6105689_SNP [dm3] 3R_10279967_SNP [dm6]	G	A	5.319e^-5	0.853	INTRON CG43143
3L	4545922	3L_4545922_SNP [dm3] 3L_4545922_SNP [dm6]	G	A	5.334e^-5	0.853	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11855480	2R_11855480_SNP [dm3] 2R_15967975_SNP [dm6]	G	T	5.337e^-5	0.853	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2L	21802210	2L_21802210_SNP [dm3] 2L_21802210_SNP [dm6]	G	A	5.444e^-5	0.853	INTERGENIC
2R	11339584	2R_11339584_SNP [dm3] 2R_15452079_SNP [dm6]	G	C	5.451e^-5	0.853	INTRON CG43729
3R	22615421	3R_22615421_SNP [dm3] 3R_26789699_SNP [dm6]	T	A	5.538e^-5	0.853	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	9147026	2R_9147026_SNP [dm3] 2R_13259521_SNP [dm6]	T	A	5.541e^-5	0.853	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3L	14816170	3L_14816170_SNP [dm3] 3L_14823070_SNP [dm6]	A	T	5.597e^-5	0.853	INTRON CG17839
2L	7365708	2L_7365708_SNP [dm3] 2L_7365708_SNP [dm6]	C	T	5.610e^-5	0.853	INTRON Wnt10
3L	1570824	3L_1570824_SNP [dm3] 3L_1570824_SNP [dm6]	T	C	5.612e^-5	0.853	INTRON CG12004	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	7202011	2L_7202011_SNP [dm3] 2L_7202011_SNP [dm6]	G	A	5.614e^-5	0.853	INTRON CG4502
3L	14555445	3L_14555445_SNP [dm3] 3L_14562345_SNP [dm6]	A	T	5.673e^-5	0.853	INTRON CG34039	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
X	3380537	X_3380537_SNP [dm3] X_3486504_SNP [dm6]	A	G	5.687e^-5	0.853	NON_SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_sens
2R	10998501	2R_10998501_SNP [dm3] 2R_15110996_SNP [dm6]	T	G	5.708e^-5	0.853	INTERGENIC
3L	743033	3L_743033_SNP [dm3] 3L_743033_SNP [dm6]	C	T	5.708e^-5	0.853	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	6253185	3R_6253185_SNP [dm3] 3R_10427463_SNP [dm6]	G	C	5.730e^-5	0.853	INTERGENIC
2R	10998491	2R_10998491_SNP [dm3] 2R_15110986_SNP [dm6]	A	G	5.819e^-5	0.858	INTERGENIC
3R	20396321	3R_20396321_SNP [dm3] 3R_24570599_SNP [dm6]	T	A	5.941e^-5	0.858	INTRON CG13624
2R	14978893	2R_14978893_SNP [dm3] 2R_19091388_SNP [dm6]	C	T	5.952e^-5	0.858	SYNONYMOUS_CODING 5-HT1A
2L	7202010	2L_7202010_SNP [dm3] 2L_7202010_SNP [dm6]	C	T	5.984e^-5	0.858	INTRON CG4502
2R	11330066	2R_11330066_SNP [dm3] 2R_15442561_SNP [dm6]	G	T	6.223e^-5	0.858	INTRON CG43729
2L	376777	2L_376777_SNP [dm3] 2L_376777_SNP [dm6]	G	A	6.362e^-5	0.858	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	14154319	X_14154319_SNP [dm3] X_14260286_SNP [dm6]	G	C	6.510e^-5	0.858	UPSTREAM CG1461 INTERGENIC
3L	11168307	3L_11168307_SNP [dm3] 3L_11175207_SNP [dm6]	T	A	6.532e^-5	0.858	INTRON CG14142
3L	13310290	3L_13310290_SNP [dm3] 3L_13317190_SNP [dm6]	T	G	6.539e^-5	0.858	INTERGENIC
2L	17861790	2L_17861790_DEL [dm3] 2L_17861790_DEL [dm6]	AA	A	6.544e^-5	0.858	INTRON CadN2
3R	12971257	3R_12971257_SNP [dm3] 3R_17145535_SNP [dm6]	A	C	6.577e^-5	0.858	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3R	12971260	3R_12971260_DEL [dm3] 3R_17145538_DEL [dm6]	AGGTAAGCATCCTA...	G	6.577e^-5	0.858	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3R	25799122	3R_25799122_SNP [dm3] 3R_29973400_SNP [dm6]	G	C	6.651e^-5	0.858	INTERGENIC
3R	18494639	3R_18494639_SNP [dm3] 3R_22668917_SNP [dm6]	T	G	6.662e^-5	0.858	INTRON CG45058	TF binding site BDTNP1_TFBS_dl
2L	1675714	2L_1675714_SNP [dm3] 2L_1675714_SNP [dm6]	T	A	6.734e^-5	0.858	INTRON chinmo
2L	1675720	2L_1675720_SNP [dm3] 2L_1675720_SNP [dm6]	C	G	6.734e^-5	0.858	INTRON chinmo
3R	10435085	3R_10435085_SNP [dm3] 3R_14609363_SNP [dm6]	G	T	6.739e^-5	0.858	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1103387	3L_1103387_SNP [dm3] 3L_1103387_SNP [dm6]	C	T	6.739e^-5	0.858	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	2926734	X_2926734_SNP [dm3] X_3032701_SNP [dm6]	C	A	6.987e^-5	0.858	INTRON kirre
3L	4737896	3L_4737896_SNP [dm3] 3L_4737896_SNP [dm6]	G	A	6.997e^-5	0.858	INTRON RhoGEF64C
3R	6105675	3R_6105675_SNP [dm3] 3R_10279953_SNP [dm6]	T	A	7.028e^-5	0.858	INTRON CG43143
3L	16202369	3L_16202369_SNP [dm3] 3L_16209269_SNP [dm6]	G	A	7.101e^-5	0.858	INTERGENIC	TF binding site mE1_TFBS_cad
2R	16864986	2R_16864986_SNP [dm3] 2R_20977481_SNP [dm6]	A	G	7.257e^-5	0.858	UTR_3_PRIME CG9344 DOWNSTREAM CG15650 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	19769710	3R_19769710_SNP [dm3] 3R_23943988_SNP [dm6]	G	A	7.301e^-5	0.858	SYNONYMOUS_CODING CG12268 UPSTREAM Gdh	TF binding site mE1_TFBS_cad
3L	11277473	3L_11277473_SNP [dm3] 3L_11284373_SNP [dm6]	G	A	7.322e^-5	0.858	UPSTREAM CR45404 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	10410917	3R_10410917_SNP [dm3] 3R_14585195_SNP [dm6]	A	T	7.395e^-5	0.858	INTRON stumps	TF binding site BDTNP1_TFBS_prd
3L	743084	3L_743084_INS [dm3] 3L_743084_INS [dm6]	T	TT	7.419e^-5	0.858	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	20262267	X_20262267_SNP [dm3] X_20391240_SNP [dm6]	A	G	7.482e^-5	0.858	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9147435	2R_9147435_SNP [dm3] 2R_13259930_SNP [dm6]	T	A	7.508e^-5	0.858	UPSTREAM CG42319 INTERGENIC
3L	4817350	3L_4817350_SNP [dm3] 3L_4817350_SNP [dm6]	G	A	7.569e^-5	0.858	SYNONYMOUS_CODING Dhc64C
2R	19719350	2R_19719350_SNP [dm3] 2R_23831827_SNP [dm6]	T	G	7.635e^-5	0.858	INTRON CG5549
2L	4147037	2L_4147037_SNP [dm3] 2L_4147037_SNP [dm6]	A	T	7.674e^-5	0.858	INTERGENIC
2R	10998512	2R_10998512_SNP [dm3] 2R_15111007_SNP [dm6]	G	T	7.693e^-5	0.858	INTERGENIC
3L	8908321	3L_8908321_SNP [dm3] 3L_8915221_SNP [dm6]	C	T	7.733e^-5	0.858	UPSTREAM CR43970 INTRON Tsp66E
3L	3680449	3L_3680449_SNP [dm3] 3L_3680449_SNP [dm6]	G	A	7.878e^-5	0.858	INTERGENIC	TF binding site mE1_TFBS_cad
3L	743046	3L_743046_SNP [dm3] 3L_743046_SNP [dm6]	A	T	7.881e^-5	0.858	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	11330036	2R_11330036_SNP [dm3] 2R_15442531_SNP [dm6]	G	C	7.934e^-5	0.858	INTRON CG43729
3L	4737895	3L_4737895_SNP [dm3] 3L_4737895_SNP [dm6]	A	G	7.992e^-5	0.858	INTRON RhoGEF64C
2R	10544277	2R_10544277_SNP [dm3] 2R_14656772_SNP [dm6]	C	T	8.061e^-5	0.858	DOWNSTREAM Adgf-E INTERGENIC
X	15413677	X_15413677_SNP [dm3] X_15519644_SNP [dm6]	C	G	8.072e^-5	0.858	INTRON Ac13E
3R	19325039	3R_19325039_SNP [dm3] 3R_23499317_SNP [dm6]	T	C	8.144e^-5	0.858	INTERGENIC
3R	22141543	3R_22141543_SNP [dm3] 3R_26315821_SNP [dm6]	T	A	8.232e^-5	0.858	INTERGENIC
3L	16983323	3L_16983323_SNP [dm3] 3L_16990223_SNP [dm6]	A	G	8.234e^-5	0.858	INTRON Exn
3R	6105532	3R_6105532_SNP [dm3] 3R_10279810_SNP [dm6]	C	T	8.260e^-5	0.858	INTRON CG43143
3L	4534444	3L_4534444_SNP [dm3] 3L_4534444_SNP [dm6]	C	A	8.261e^-5	0.858	INTRON CG11353
3R	27129490	3R_27129490_SNP [dm3] 3R_31303768_SNP [dm6]	A	G	8.278e^-5	0.858	SYNONYMOUS_CODING CG11340	TF binding site mE1_TFBS_sens
2R	11530467	2R_11530467_SNP [dm3] 2R_15642962_SNP [dm6]	T	A	8.317e^-5	0.858	INTRON CG42524
3L	742992	3L_742992_DEL [dm3] 3L_742992_DEL [dm6]	ATGGTTTTTGATAACTAA...	A	8.323e^-5	0.858	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	16202334	3L_16202334_SNP [dm3] 3L_16209234_SNP [dm6]	A	T	8.415e^-5	0.858	INTERGENIC	TF binding site mE1_TFBS_cad
3L	2646789	3L_2646789_SNP [dm3] 3L_2646789_SNP [dm6]	T	G	8.421e^-5	0.858	UTR_3_PRIME CG1143 DOWNSTREAM CG1143
X	21081580	X_21081580_SNP [dm3] X_21210553_SNP [dm6]	A	G	8.614e^-5	0.858	INTRON CG32521
2R	17725920	2R_17725920_SNP [dm3] 2R_21838415_SNP [dm6]	C	T	8.642e^-5	0.858	SYNONYMOUS_CODING CG4372
3L	743058	3L_743058_SNP [dm3] 3L_743058_SNP [dm6]	T	A	8.662e^-5	0.858	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	14739820	3R_14739820_SNP [dm3] 3R_18914098_SNP [dm6]	T	C	8.681e^-5	0.858	UPSTREAM Xrp1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	7726328	3L_7726328_SNP [dm3] 3L_7733228_SNP [dm6]	T	C	8.783e^-5	0.858	DOWNSTREAM Snmp2 INTRON CG32373
X	19871890	X_19871890_SNP [dm3] X_19977857_SNP [dm6]	C	T	8.842e^-5	0.858	INTERGENIC
3R	6105410	3R_6105410_SNP [dm3] 3R_10279688_SNP [dm6]	C	G	8.867e^-5	0.858	INTRON CG43143
2R	19719423	2R_19719423_SNP [dm3] 2R_23831900_SNP [dm6]	A	G	8.882e^-5	0.858	INTRON CG5549
3R	14395022	3R_14395022_SNP [dm3] 3R_18569300_SNP [dm6]	G	A	8.886e^-5	0.858	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2R	11340150	2R_11340150_SNP [dm3] 2R_15452645_SNP [dm6]	A	T	8.908e^-5	0.858	INTRON CG43729
X	12600147	X_12600147_SNP [dm3] X_12706114_SNP [dm6]	C	A	8.916e^-5	0.858	UTR_5_PRIME CG15725 INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2863927	2L_2863927_SNP [dm3] 2L_2863927_SNP [dm6]	C	T	8.961e^-5	0.858	INTRON CG2991	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19019176	X_19019176_SNP [dm3] X_19125143_SNP [dm6]	C	A	8.974e^-5	0.858	UTR_3_PRIME tgy UPSTREAM CG15882 DOWNSTREAM tgy
2R	12678631	2R_12678631_SNP [dm3] 2R_16791126_SNP [dm6]	G	A	8.984e^-5	0.858	SYNONYMOUS_CODING CG5522	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	15281222	2L_15281222_SNP [dm3] 2L_15281222_SNP [dm6]	A	G	9.012e^-5	0.858	DOWNSTREAM CR45349 INTERGENIC
3L	1042781	3L_1042781_SNP [dm3] 3L_1042781_SNP [dm6]	T	C	9.015e^-5	0.858	INTRON bab1
2R	4950454	2R_4950454_SNP [dm3] 2R_9062949_SNP [dm6]	G	A	9.056e^-5	0.858	INTRON ana	regulatory region REDfly_CRMs
3L	14560642	3L_14560642_SNP [dm3] 3L_14567542_SNP [dm6]	C	A	9.067e^-5	0.858	INTRON CG42758
3R	13600041	3R_13600041_SNP [dm3] 3R_17774319_SNP [dm6]	C	T	9.096e^-5	0.858	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
X	10868903	X_10868903_SNP [dm3] X_10974870_SNP [dm6]	A	G	9.121e^-5	0.858	INTRON CG42339
X	19871581	X_19871581_SNP [dm3] X_19977548_SNP [dm6]	T	G	9.163e^-5	0.858	INTERGENIC
2R	14086288	2R_14086288_SNP [dm3] 2R_18198783_SNP [dm6]	A	C	9.218e^-5	0.858	INTERGENIC
2L	5496684	2L_5496684_SNP [dm3] 2L_5496684_SNP [dm6]	A	G	9.369e^-5	0.858	INTERGENIC
2R	12116819	2R_12116819_SNP [dm3] 2R_16229314_SNP [dm6]	A	G	9.488e^-5	0.858	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14816333	3L_14816333_SNP [dm3] 3L_14823233_SNP [dm6]	G	A	9.488e^-5	0.858	INTRON CG17839
2L	17333598	2L_17333598_SNP [dm3] 2L_17333598_SNP [dm6]	G	A	9.647e^-5	0.858	INTERGENIC
2L	378373	2L_378373_SNP [dm3] 2L_378373_SNP [dm6]	A	T	9.681e^-5	0.858	UTR_5_PRIME al	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3R	25760016	3R_25760016_SNP [dm3] 3R_29934294_SNP [dm6]	A	C	9.700e^-5	0.858	NON_SYNONYMOUS_CODING CG42558 UTR_3_PRIME CG42557 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad
3L	16202321	3L_16202321_SNP [dm3] 3L_16209221_SNP [dm6]	G	T	9.760e^-5	0.858	INTERGENIC	TF binding site mE1_TFBS_cad
X	3377694	X_3377694_SNP [dm3] X_3483661_SNP [dm6]	G	A	9.811e^-5	0.858	SYNONYMOUS_CODING CG10802 DOWNSTREAM CG14270 INTRON CR44999	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	16864990	2R_16864990_SNP [dm3] 2R_20977485_SNP [dm6]	G	T	9.840e^-5	0.858	UTR_3_PRIME CG9344 DOWNSTREAM CG15650 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	12325115	2L_12325115_SNP [dm3] 2L_12325115_SNP [dm6]	T	C	9.941e^-5	0.858	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4556835	3L_4556835_SNP [dm3] 3L_4556835_SNP [dm6]	T	C	1.013e^-4	0.858	UPSTREAM CG42540 INTRON CG42540
2R	9147438	2R_9147438_SNP [dm3] 2R_13259933_SNP [dm6]	G	A	1.015e^-4	0.858	UPSTREAM CG42319 INTERGENIC
3R	26628563	3R_26628563_SNP [dm3] 3R_30802841_SNP [dm6]	G	C	1.023e^-4	0.858	INTRON wts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
3R	5129759	3R_5129759_SNP [dm3] 3R_9304037_SNP [dm6]	C	A	1.024e^-4	0.858	INTRON CG8861
3R	3469607	3R_3469607_SNP [dm3] 3R_7643885_SNP [dm6]	C	T	1.037e^-4	0.858	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17315218	2L_17315218_SNP [dm3] 2L_17315218_SNP [dm6]	T	C	1.042e^-4	0.858	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4318113	2L_4318113_SNP [dm3] 2L_4318113_SNP [dm6]	T	C	1.044e^-4	0.858	INTRON tutl	TF binding site mE1_TFBS_HSA
3L	17624822	3L_17624822_SNP [dm3] 3L_17631722_SNP [dm6]	G	C	1.050e^-4	0.858	DOWNSTREAM CG7510 EXON CR44566
2L	9053262	2L_9053262_SNP [dm3] 2L_9053262_SNP [dm6]	T	A	1.055e^-4	0.858	INTRON CG31708
3R	6105593	3R_6105593_SNP [dm3] 3R_10279871_SNP [dm6]	C	T	1.056e^-4	0.858	INTRON CG43143
2R	17122056	2R_17122056_SNP [dm3] 2R_21234551_SNP [dm6]	C	T	1.057e^-4	0.858	INTRON ASPP
2R	10847556	2R_10847556_SNP [dm3] 2R_14960051_SNP [dm6]	T	G	1.061e^-4	0.858	INTRON aPKC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11330161	2R_11330161_SNP [dm3] 2R_15442656_SNP [dm6]	G	A	1.063e^-4	0.858	INTRON CG43729
3L	4737859	3L_4737859_SNP [dm3] 3L_4737859_SNP [dm6]	A	G	1.066e^-4	0.858	INTRON RhoGEF64C
X	3110950	X_3110950_SNP [dm3] X_3216917_SNP [dm6]	A	C	1.066e^-4	0.858	INTRON dnc
3R	5137887	3R_5137887_SNP [dm3] 3R_9312165_SNP [dm6]	A	G	1.071e^-4	0.858	INTRON CG8861
X	6477081	X_6477081_SNP [dm3] X_6583048_SNP [dm6]	G	T	1.076e^-4	0.858	SYNONYMOUS_CODING CG34417 INTRON CG34417
X	5120460	X_5120460_SNP [dm3] X_5226427_SNP [dm6]	A	G	1.080e^-4	0.858	INTRON CG15465 & 1 other
2R	11278216	2R_11278216_SNP [dm3] 2R_15390711_SNP [dm6]	T	C	1.088e^-4	0.858	INTERGENIC
3R	16709916	3R_16709916_SNP [dm3] 3R_20884194_SNP [dm6]	A	T	1.088e^-4	0.858	INTERGENIC	TF binding site mE1_TFBS_cad
2R	11177864	2R_11177864_SNP [dm3] 2R_15290359_SNP [dm6]	A	G	1.089e^-4	0.858	INTRON Trpm
2R	16864005	2R_16864005_SNP [dm3] 2R_20976500_SNP [dm6]	A	T	1.090e^-4	0.858	UPSTREAM CG9344 INTRON CG34115	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	10482563	2L_10482563_SNP [dm3] 2L_10482563_SNP [dm6]	C	A	1.096e^-4	0.858	NON_SYNONYMOUS_CODING RluA-2 UTR_3_PRIME RluA-2 UPSTREAM Grip75	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	11330698	2R_11330698_SNP [dm3] 2R_15443193_SNP [dm6]	G	T	1.099e^-4	0.858	INTRON CG43729
3L	1103352	3L_1103352_INS [dm3] 3L_1103352_INS [dm6]	T	TGTAT	1.101e^-4	0.858	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	19871664	X_19871664_SNP [dm3] X_19977631_SNP [dm6]	C	G	1.102e^-4	0.858	INTERGENIC
2R	7157527	2R_7157527_SNP [dm3] 2R_11270022_SNP [dm6]	A	G	1.103e^-4	0.858	SYNONYMOUS_CODING Cpr47Ef	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6100247	3L_6100247_SNP [dm3] 3L_6107147_SNP [dm6]	C	T	1.107e^-4	0.858	INTRON Ets65A	TF binding site mE1_TFBS_cad
X	4091100	X_4091100_SNP [dm3] X_4197067_SNP [dm6]	G	C	1.108e^-4	0.858	INTRON Fas2
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	1.116e^-4	0.858	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16786743	2R_16786743_SNP [dm3] 2R_20899238_SNP [dm6]	T	C	1.125e^-4	0.858	DOWNSTREAM CR43160 INTRON otp	regulatory region REDfly_CRMs
3R	19806727	3R_19806727_INS [dm3] 3R_23981005_INS [dm6]	A	AGTAAAAACTTAAA...	1.127e^-4	0.858	DOWNSTREAM CG31140 INTRON CG31140
3R	16890386	3R_16890386_SNP [dm3] 3R_21064664_SNP [dm6]	A	G	1.127e^-4	0.858	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3L	1561196	3L_1561196_SNP [dm3] 3L_1561196_SNP [dm6]	G	T	1.136e^-4	0.858	NON_SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	1570866	3L_1570866_SNP [dm3] 3L_1570866_SNP [dm6]	T	C	1.139e^-4	0.858	INTRON CG12004	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	15213950	3R_15213950_SNP [dm3] 3R_19388228_SNP [dm6]	G	A	1.139e^-4	0.858	DOWNSTREAM CR34285 INTRON Ino80 & 1 other	TF binding site mE1_TFBS_sens
3L	9661315	3L_9661315_SNP [dm3] 3L_9668215_SNP [dm6]	A	G	1.152e^-4	0.858	INTRON fry	TF binding site mE1_TFBS_cad
X	9536658	X_9536658_SNP [dm3] X_9642625_SNP [dm6]	T	A	1.157e^-4	0.858	INTRON l_1_G0232	TF binding site mE1_TFBS_inv
2R	12821148	2R_12821148_SNP [dm3] 2R_16933643_SNP [dm6]	C	T	1.159e^-4	0.858	INTRON Pkc53E	TF binding site BDTNP1_TFBS_twi
X	6451166	X_6451166_SNP [dm3] X_6557133_SNP [dm6]	C	T	1.159e^-4	0.858	SYNONYMOUS_CODING CG34417 INTRON CG34417
2R	11907181	2R_11907181_SNP [dm3] 2R_16019676_SNP [dm6]	A	G	1.162e^-4	0.858	INTRON CG8399
2L	12923423	2L_12923423_SNP [dm3] 2L_12923423_SNP [dm6]	T	G	1.163e^-4	0.858	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
2L	9443469	2L_9443469_SNP [dm3] 2L_9443469_SNP [dm6]	C	T	1.169e^-4	0.858	INTRON numb
3R	13600157	3R_13600157_SNP [dm3] 3R_17774435_SNP [dm6]	T	G	1.172e^-4	0.858	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3L	9873427	3L_9873427_SNP [dm3] 3L_9880327_SNP [dm6]	A	G	1.174e^-4	0.858	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
2R	12400940	2R_12400940_SNP [dm3] 2R_16513435_SNP [dm6]	T	C	1.177e^-4	0.858	INTRON Sema-2a
2R	11251034	2R_11251034_INS [dm3] 2R_15363529_INS [dm6]	A	ATA	1.179e^-4	0.858	INTRON unc-5
X	10443026	X_10443026_SNP [dm3] X_10548993_SNP [dm6]	C	T	1.185e^-4	0.858	INTRON spri
X	12266372	X_12266372_SNP [dm3] X_12372339_SNP [dm6]	A	G	1.185e^-4	0.858	UPSTREAM CG2577 INTERGENIC
X	13739147	X_13739147_SNP [dm3] X_13845114_SNP [dm6]	A	G	1.199e^-4	0.858	INTRON AMPdeam	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu
2L	7343130	2L_7343130_SNP [dm3] 2L_7343130_SNP [dm6]	G	T	1.200e^-4	0.858	INTRON Wnt6
2R	9147063	2R_9147063_SNP [dm3] 2R_13259558_SNP [dm6]	G	A	1.200e^-4	0.858	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3L	16896011	3L_16896011_SNP [dm3] 3L_16902911_SNP [dm6]	A	T	1.200e^-4	0.858	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo
3L	6100199	3L_6100199_SNP [dm3] 3L_6107099_SNP [dm6]	C	T	1.203e^-4	0.858	INTRON Ets65A	TF binding site mE1_TFBS_cad
X	7613485	X_7613485_SNP [dm3] X_7719452_SNP [dm6]	G	A	1.206e^-4	0.858	INTERGENIC
2R	17920188	2R_17920188_DEL [dm3] 2R_22032683_DEL [dm6]	GGGCTGG	G	1.209e^-4	0.858	INTRON CG34370
X	9621573	X_9621573_SNP [dm3] X_9727540_SNP [dm6]	A	C	1.216e^-4	0.858	DOWNSTREAM CR43498 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11872555	2R_11872555_SNP [dm3] 2R_15985050_SNP [dm6]	T	C	1.221e^-4	0.858	SYNONYMOUS_CODING Strn-Mlck
2R	12696341	2R_12696341_SNP [dm3] 2R_16808836_SNP [dm6]	C	T	1.232e^-4	0.858	INTERGENIC
X	16791329	X_16791329_SNP [dm3] X_16897296_SNP [dm6]	G	A	1.242e^-4	0.858	UPSTREAM CG33252 INTERGENIC
2L	15281172	2L_15281172_SNP [dm3] 2L_15281172_SNP [dm6]	G	A	1.242e^-4	0.858	DOWNSTREAM CR45349 INTERGENIC
2R	7408586	2R_7408586_SNP [dm3] 2R_11521081_SNP [dm6]	C	T	1.243e^-4	0.858	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	16791311	X_16791311_SNP [dm3] X_16897278_SNP [dm6]	G	C	1.244e^-4	0.858	UPSTREAM CG33252 INTERGENIC
X	5826894	X_5826894_INS [dm3] X_5932861_INS [dm6]	T	TT	1.246e^-4	0.858	INTRON CG3726
3R	5709131	3R_5709131_SNP [dm3] 3R_9883409_SNP [dm6]	C	G	1.253e^-4	0.858	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19115295	X_19115295_SNP [dm3] X_19221262_SNP [dm6]	C	A	1.254e^-4	0.858	INTRON CG7884	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	4556656	3L_4556656_SNP [dm3] 3L_4556656_SNP [dm6]	C	G	1.286e^-4	0.877	UPSTREAM CG42540 INTRON CG42540
X	4091094	X_4091094_DEL [dm3] X_4197061_DEL [dm6]	AAA	A	1.301e^-4	0.884	INTRON Fas2
2L	1923516	2L_1923516_SNP [dm3] 2L_1923516_SNP [dm6]	T	C	1.347e^-4	0.89	INTRON CG7337	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	16890622	3R_16890622_SNP [dm3] 3R_21064900_SNP [dm6]	G	A	1.347e^-4	0.89	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3L	16202346	3L_16202346_SNP [dm3] 3L_16209246_SNP [dm6]	C	T	1.362e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_cad
2R	4953988	2R_4953988_SNP [dm3] 2R_9066483_SNP [dm6]	T	C	1.367e^-4	0.89	INTRON ana	regulatory region REDfly_CRMs
3R	27867697	3R_27867697_INS [dm3] 3R_32041975_INS [dm6]	CCA	AGTGGTGAGTGGC...	1.372e^-4	0.89	INTERGENIC
2L	6389905	2L_6389905_SNP [dm3] 2L_6389905_SNP [dm6]	C	T	1.373e^-4	0.89	INTRON CG42368	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18464310	X_18464310_SNP [dm3] X_18570277_SNP [dm6]	C	T	1.379e^-4	0.89	INTRON Bx	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
3L	14835301	3L_14835301_SNP [dm3] 3L_14842201_SNP [dm6]	T	A	1.380e^-4	0.89	INTRON CG17839
2L	9443434	2L_9443434_SNP [dm3] 2L_9443434_SNP [dm6]	C	T	1.381e^-4	0.89	INTRON numb
2L	6463898	2L_6463898_SNP [dm3] 2L_6463898_SNP [dm6]	A	T	1.387e^-4	0.89	UTR_5_PRIME CG16947	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	6451169	X_6451169_SNP [dm3] X_6557136_SNP [dm6]	A	T	1.391e^-4	0.89	SYNONYMOUS_CODING CG34417 INTRON CG34417
2R	18542624	2R_18542624_SNP [dm3] 2R_22655119_SNP [dm6]	A	T	1.393e^-4	0.89	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other INTRON CG30196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14702724	2L_14702724_SNP [dm3] 2L_14702724_SNP [dm6]	C	G	1.399e^-4	0.89	INTERGENIC
X	6451181	X_6451181_SNP [dm3] X_6557148_SNP [dm6]	A	G	1.404e^-4	0.89	SYNONYMOUS_CODING CG34417 INTRON CG34417
2L	18328109	2L_18328109_SNP [dm3] 2L_18328109_SNP [dm6]	C	G	1.405e^-4	0.89	INTRON Fas3
3L	14561384	3L_14561384_SNP [dm3] 3L_14568284_SNP [dm6]	G	A	1.408e^-4	0.89	DOWNSTREAM CG42758 INTERGENIC
2R	6567949	2R_6567949_SNP [dm3] 2R_10680444_SNP [dm6]	A	C	1.413e^-4	0.89	INTRON stan	TF binding site mE1_TFBS_Trl
X	3290362	X_3290362_SNP [dm3] X_3396329_SNP [dm6]	T	A	1.423e^-4	0.89	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8518875	3L_8518875_SNP [dm3] 3L_8525775_SNP [dm6]	A	G	1.442e^-4	0.89	UPSTREAM GstO1 INTRON foi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	15213703	3L_15213703_SNP [dm3] 3L_15220603_SNP [dm6]	C	T	1.447e^-4	0.89	INTERGENIC
2R	19024849	2R_19024849_SNP [dm3] 2R_23137326_SNP [dm6]	T	G	1.449e^-4	0.89	INTERGENIC
2L	4930748	2L_4930748_SNP [dm3] 2L_4930748_SNP [dm6]	T	A	1.450e^-4	0.89	INTRON hoe1
3R	27137550	3R_27137550_SNP [dm3] 3R_31311828_SNP [dm6]	C	T	1.452e^-4	0.89	UTR_5_PRIME CG34347	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	11327910	2R_11327910_SNP [dm3] 2R_15440405_SNP [dm6]	T	C	1.459e^-4	0.89	INTRON CG43729
3L	11270074	3L_11270074_SNP [dm3] 3L_11276974_SNP [dm6]	A	G	1.462e^-4	0.89	INTERGENIC
2L	8619047	2L_8619047_SNP [dm3] 2L_8619047_SNP [dm6]	C	T	1.468e^-4	0.89	UPSTREAM tRNA:CR31602 INTRON Sema-1a
2R	11530566	2R_11530566_SNP [dm3] 2R_15643061_SNP [dm6]	T	C	1.469e^-4	0.89	INTRON CG42524
X	16847578	X_16847578_SNP [dm3] X_16953545_SNP [dm6]	T	C	1.473e^-4	0.89	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15767069	3R_15767069_SNP [dm3] 3R_19941347_SNP [dm6]	G	A	1.475e^-4	0.89	INTRON Hs6st
3R	25125893	3R_25125893_INS [dm3] 3R_29300171_INS [dm6]	A	AA	1.478e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	25125906	3R_25125906_SNP [dm3] 3R_29300184_SNP [dm6]	A	C	1.478e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	8388326	3R_8388326_SNP [dm3] 3R_12562604_SNP [dm6]	C	T	1.488e^-4	0.89	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
2L	7025296	2L_7025296_SNP [dm3] 2L_7025296_SNP [dm6]	C	A	1.498e^-4	0.89	NON_SYNONYMOUS_CODING CG31908	TF binding site mE1_TFBS_cad
2R	19127148	2R_19127148_SNP [dm3] 2R_23239625_SNP [dm6]	T	G	1.505e^-4	0.89	INTERGENIC
3L	411991	3L_411991_SNP [dm3] 3L_411991_SNP [dm6]	A	T	1.506e^-4	0.89	INTERGENIC
3R	26618196	3R_26618196_SNP [dm3] 3R_30792474_SNP [dm6]	C	T	1.516e^-4	0.89	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
3L	4841343	3L_4841343_SNP [dm3] 3L_4841343_SNP [dm6]	A	C	1.523e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	17877822	3R_17877822_SNP [dm3] 3R_22052100_SNP [dm6]	C	T	1.534e^-4	0.89	INTRON how	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	21276634	3R_21276634_SNP [dm3] 3R_25450912_SNP [dm6]	C	T	1.546e^-4	0.89	INTRON Fur1
3L	19472074	3L_19472074_SNP [dm3] 3L_19478974_SNP [dm6]	G	A	1.551e^-4	0.89	UPSTREAM CR32207 DOWNSTREAM CR42842 INTERGENIC
3R	13360239	3R_13360239_INS [dm3] 3R_17534517_INS [dm6]	T	AA	1.557e^-4	0.89	UTR_5_PRIME CG5823 UPSTREAM P5cr-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	2683655	3L_2683655_SNP [dm3] 3L_2683655_SNP [dm6]	A	G	1.558e^-4	0.89	INTRON Fife
3L	14835265	3L_14835265_SNP [dm3] 3L_14842165_SNP [dm6]	T	C	1.560e^-4	0.89	INTRON CG17839
3L	16867402	3L_16867402_SNP [dm3] 3L_16874302_SNP [dm6]	C	A	1.564e^-4	0.89	INTRON Lmpt
2L	3832016	2L_3832016_SNP [dm3] 2L_3832016_SNP [dm6]	G	A	1.580e^-4	0.89	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE
2R	17028512	2R_17028512_SNP [dm3] 2R_21141007_SNP [dm6]	A	C	1.587e^-4	0.89	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	25765336	3R_25765336_SNP [dm3] 3R_29939614_SNP [dm6]	T	C	1.588e^-4	0.89	SYNONYMOUS_CODING CG15523
2R	13745550	2R_13745550_SNP [dm3] 2R_17858045_SNP [dm6]	A	G	1.589e^-4	0.89	INTRON olf186-F
3L	3680456	3L_3680456_SNP [dm3] 3L_3680456_SNP [dm6]	G	T	1.591e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_cad
3L	16331071	3L_16331071_SNP [dm3] 3L_16337971_SNP [dm6]	C	A	1.596e^-4	0.89	INTERGENIC
2L	14031895	2L_14031895_SNP [dm3] 2L_14031895_SNP [dm6]	T	C	1.598e^-4	0.89	UPSTREAM CG18095 DOWNSTREAM CR45284 INTERGENIC
3L	4556798	3L_4556798_SNP [dm3] 3L_4556798_SNP [dm6]	C	A	1.599e^-4	0.89	UPSTREAM CG42540 INTRON CG42540
3L	18575735	3L_18575735_SNP [dm3] 3L_18582635_SNP [dm6]	C	A	1.600e^-4	0.89	UPSTREAM CR45435 INTERGENIC
2R	13556691	2R_13556691_SNP [dm3] 2R_17669186_SNP [dm6]	G	T	1.602e^-4	0.89	UTR_3_PRIME eIF3-S8 UPSTREAM CG30108 & 1 other DOWNSTREAM eIF3-S8	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cnc
3L	14815465	3L_14815465_SNP [dm3] 3L_14822365_SNP [dm6]	G	A	1.605e^-4	0.89	INTRON CG17839
X	13137037	X_13137037_SNP [dm3] X_13243004_SNP [dm6]	C	T	1.605e^-4	0.89	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9501642	2L_9501642_SNP [dm3] 2L_9501642_SNP [dm6]	G	C	1.609e^-4	0.89	INTRON CG33298
3R	5963561	3R_5963561_SNP [dm3] 3R_10137839_SNP [dm6]	T	C	1.618e^-4	0.89	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	2868311	3R_2868311_INS [dm3] 3R_7042589_INS [dm6]	C	CGGA	1.624e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	1.629e^-4	0.89	INTRON dnc
2L	11930045	2L_11930045_SNP [dm3] 2L_11930045_SNP [dm6]	C	T	1.630e^-4	0.89	INTERGENIC
2R	12282058	2R_12282058_SNP [dm3] 2R_16394553_SNP [dm6]	G	A	1.635e^-4	0.89	INTRON Sema-2b
3R	13469273	3R_13469273_SNP [dm3] 3R_17643551_SNP [dm6]	T	C	1.638e^-4	0.89	INTRON CG43175
X	13137038	X_13137038_SNP [dm3] X_13243005_SNP [dm6]	A	G	1.640e^-4	0.89	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	18930447	2L_18930447_SNP [dm3] 2L_18930447_SNP [dm6]	G	A	1.641e^-4	0.89	INTRON ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24444894	3R_24444894_SNP [dm3] 3R_28619172_SNP [dm6]	A	G	1.643e^-4	0.89	INTRON CG10011
2L	4930475	2L_4930475_SNP [dm3] 2L_4930475_SNP [dm6]	A	G	1.650e^-4	0.89	INTRON hoe1
2R	16965216	2R_16965216_SNP [dm3] 2R_21077711_SNP [dm6]	A	C	1.651e^-4	0.89	INTRON Treh
2L	10129257	2L_10129257_SNP [dm3] 2L_10129257_SNP [dm6]	C	A	1.662e^-4	0.89	INTRON CG44153
3R	16890626	3R_16890626_SNP [dm3] 3R_21064904_SNP [dm6]	A	T	1.662e^-4	0.89	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3L	15693061	3L_15693061_SNP [dm3] 3L_15699961_SNP [dm6]	C	T	1.667e^-4	0.89	UPSTREAM comm2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	17323053	3L_17323053_SNP [dm3] 3L_17329953_SNP [dm6]	A	T	1.669e^-4	0.89	UPSTREAM Or74a INTERGENIC
X	15413680	X_15413680_SNP [dm3] X_15519647_SNP [dm6]	A	G	1.676e^-4	0.89	INTRON Ac13E
3L	7611943	3L_7611943_SNP [dm3] 3L_7618843_SNP [dm6]	G	A	1.681e^-4	0.89	INTRON CG33275
2L	17861799	2L_17861799_SNP [dm3] 2L_17861799_SNP [dm6]	A	C	1.689e^-4	0.89	INTRON CadN2
2R	16864219	2R_16864219_SNP [dm3] 2R_20976714_SNP [dm6]	G	A	1.711e^-4	0.89	UPSTREAM CG9344 DOWNSTREAM CG15650 INTRON CG34115	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	12439132	3L_12439132_DEL [dm3] 3L_12446032_DEL [dm6]	TT	T	1.723e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21344585	3R_21344585_SNP [dm3] 3R_25518863_SNP [dm6]	G	T	1.739e^-4	0.89	INTRON msi	TF binding site mE1_TFBS_Trl
3L	1629802	3L_1629802_SNP [dm3] 3L_1629802_SNP [dm6]	C	T	1.739e^-4	0.89	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	11576437	2R_11576437_SNP [dm3] 2R_15688932_SNP [dm6]	T	C	1.749e^-4	0.89	NON_SYNONYMOUS_CODING Cep89 UPSTREAM CG30090	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10875304	3R_10875304_INS [dm3] 3R_15049582_INS [dm6]	ACC	TATGTA	1.755e^-4	0.89	INTERGENIC
2R	15596175	2R_15596175_DEL [dm3] 2R_19708670_DEL [dm6]	TTAAA	T	1.758e^-4	0.89	INTERGENIC
2R	15596182	2R_15596182_DEL [dm3] 2R_19708677_DEL [dm6]	TA	T	1.758e^-4	0.89	INTERGENIC
2R	21060294	2R_21060294_SNP [dm3] 2R_25172771_SNP [dm6]	A	T	1.759e^-4	0.89	UPSTREAM Sfp60F DOWNSTREAM PebII INTERGENIC
X	9536672	X_9536672_SNP [dm3] X_9642639_SNP [dm6]	G	T	1.763e^-4	0.89	INTRON l_1_G0232	TF binding site mE1_TFBS_inv
X	7623480	X_7623480_SNP [dm3] X_7729447_SNP [dm6]	A	G	1.767e^-4	0.89	INTRON CG12155	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	21171393	X_21171393_SNP [dm3] X_21300366_SNP [dm6]	G	C	1.769e^-4	0.89	UTR_5_PRIME CG1718
3L	14561228	3L_14561228_SNP [dm3] 3L_14568128_SNP [dm6]	T	G	1.789e^-4	0.89	UTR_3_PRIME CG42758
2R	11340700	2R_11340700_SNP [dm3] 2R_15453195_SNP [dm6]	T	G	1.798e^-4	0.89	INTRON CG43729
3R	5121979	3R_5121979_SNP [dm3] 3R_9296257_SNP [dm6]	T	G	1.798e^-4	0.89	INTRON CG8861
3L	2645611	3L_2645611_SNP [dm3] 3L_2645611_SNP [dm6]	C	A	1.805e^-4	0.89	INTRON CG1143	TF binding site mE1_TFBS_cad
3L	14079483	3L_14079483_DEL [dm3] 3L_14086383_DEL [dm6]	AAAGGAACTCA...	A	1.812e^-4	0.89	DOWNSTREAM CG8100 INTERGENIC
3R	10196368	3R_10196368_SNP [dm3] 3R_14370646_SNP [dm6]	T	A	1.814e^-4	0.89	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	20945746	3L_20945746_SNP [dm3] 3L_20952646_SNP [dm6]	G	A	1.824e^-4	0.89	INTERGENIC
2L	21055222	2L_21055222_SNP [dm3] 2L_21055222_SNP [dm6]	A	T	1.824e^-4	0.89	NON_SYNONYMOUS_CODING Itgbetanu	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10264877	3L_10264877_SNP [dm3] 3L_10271777_SNP [dm6]	G	A	1.833e^-4	0.89	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	10837352	2R_10837352_SNP [dm3] 2R_14949847_SNP [dm6]	A	G	1.849e^-4	0.89	UPSTREAM aPKC INTRON aPKC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	15154301	3R_15154301_SNP [dm3] 3R_19328579_SNP [dm6]	A	G	1.853e^-4	0.89	INTERGENIC
2R	14452456	2R_14452456_SNP [dm3] 2R_18564951_SNP [dm6]	G	A	1.862e^-4	0.89	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	27100391	3R_27100391_DEL [dm3] 3R_31274669_DEL [dm6]	AA	A	1.868e^-4	0.89	INTERGENIC
X	9816859	X_9816859_DEL [dm3] X_9922826_DEL [dm6]	CC	C	1.878e^-4	0.89	INTERGENIC
3L	14561076	3L_14561076_SNP [dm3] 3L_14567976_SNP [dm6]	T	C	1.879e^-4	0.89	SYNONYMOUS_CODING CG42758
3L	2646601	3L_2646601_SNP [dm3] 3L_2646601_SNP [dm6]	T	C	1.880e^-4	0.89	UTR_3_PRIME CG1143	TF binding site mE1_TFBS_cad
2L	2669602	2L_2669602_SNP [dm3] 2L_2669602_SNP [dm6]	G	T	1.880e^-4	0.89	UPSTREAM Gr23a INTERGENIC
2R	3078631	2R_3078631_DEL [dm3] 2R_7191126_DEL [dm6]	TACT	T	1.888e^-4	0.89	INTRON pk	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
2R	11278234	2R_11278234_SNP [dm3] 2R_15390729_SNP [dm6]	C	G	1.889e^-4	0.89	INTERGENIC
2R	16265606	2R_16265606_SNP [dm3] 2R_20378101_SNP [dm6]	C	A	1.901e^-4	0.89	INTERGENIC
3L	7080571	3L_7080571_SNP [dm3] 3L_7087471_SNP [dm6]	C	A	1.904e^-4	0.89	UPSTREAM Cpr65Ea DOWNSTREAM Cpr65Eb INTERGENIC	TF binding site mE1_TFBS_inv
3R	7321694	3R_7321694_SNP [dm3] 3R_11495972_SNP [dm6]	T	C	1.923e^-4	0.89	INTERGENIC
3R	5121954	3R_5121954_SNP [dm3] 3R_9296232_SNP [dm6]	A	G	1.924e^-4	0.89	INTRON CG8861
3R	14394850	3R_14394850_SNP [dm3] 3R_18569128_SNP [dm6]	C	A	1.926e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14851132	3R_14851132_SNP [dm3] 3R_19025410_SNP [dm6]	T	G	1.930e^-4	0.89	SYNONYMOUS_CODING CG14285 DOWNSTREAM CG14286 & 1 other
X	17259658	X_17259658_SNP [dm3] X_17365625_SNP [dm6]	T	C	1.931e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	11168356	3L_11168356_INS [dm3] 3L_11175256_INS [dm6]	G	TTATA	1.935e^-4	0.89	INTRON CG14142	TF binding site mE1_TFBS_cad
X	20262270	X_20262270_INS [dm3] X_20391243_INS [dm6]	A	ATCAATAATAATTCAA...	1.936e^-4	0.89	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20335590	X_20335590_SNP [dm3] X_20464563_SNP [dm6]	G	A	1.952e^-4	0.89	INTRON CG32506
X	8402755	X_8402755_SNP [dm3] X_8508722_SNP [dm6]	G	C	1.968e^-4	0.89	UPSTREAM CG33181 INTRON CG33181
2R	3265898	2R_3265898_SNP [dm3] 2R_7378393_SNP [dm6]	C	A	1.971e^-4	0.89	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
X	3376190	X_3376190_SNP [dm3] X_3482157_SNP [dm6]	A	G	1.972e^-4	0.89	UTR_5_PRIME CG10804 UPSTREAM CG10802 INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	5557581	2L_5557581_SNP [dm3] 2L_5557581_SNP [dm6]	A	G	1.975e^-4	0.89	SPLICE_SITE_REGION GluRIIA SYNONYMOUS_CODING GluRIIA
3L	11168354	3L_11168354_SNP [dm3] 3L_11175254_SNP [dm6]	G	A	1.981e^-4	0.89	INTRON CG14142	TF binding site mE1_TFBS_cad
X	17120347	X_17120347_SNP [dm3] X_17226314_SNP [dm6]	A	G	1.982e^-4	0.89	SYNONYMOUS_CODING CG10598
3L	743993	3L_743993_SNP [dm3] 3L_743993_SNP [dm6]	T	C	1.996e^-4	0.89	UPSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6253280	3R_6253280_SNP [dm3] 3R_10427558_SNP [dm6]	T	A	1.997e^-4	0.89	INTERGENIC
2R	16253858	2R_16253858_SNP [dm3] 2R_20366353_SNP [dm6]	A	G	2.001e^-4	0.89	INTERGENIC
3R	18478641	3R_18478641_SNP [dm3] 3R_22652919_SNP [dm6]	G	T	2.005e^-4	0.89	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18542589	2R_18542589_SNP [dm3] 2R_22655084_SNP [dm6]	A	G	2.005e^-4	0.89	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other INTRON CG30196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	4956241	2R_4956241_SNP [dm3] 2R_9068736_SNP [dm6]	T	G	2.006e^-4	0.89	UPSTREAM ana INTRON ana
2R	8479010	2R_8479010_SNP [dm3] 2R_12591505_SNP [dm6]	T	C	2.019e^-4	0.89	DOWNSTREAM CR30055 INTRON Sin3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
3R	9881211	3R_9881211_SNP [dm3] 3R_14055489_SNP [dm6]	A	C	2.027e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	17460045	3L_17460045_SNP [dm3] 3L_17466945_SNP [dm6]	C	T	2.029e^-4	0.89	DOWNSTREAM CG7603 INTERGENIC
3L	12571356	3L_12571356_SNP [dm3] 3L_12578256_SNP [dm6]	C	T	2.033e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5145560	3L_5145560_SNP [dm3] 3L_5152460_SNP [dm6]	T	A	2.039e^-4	0.89	UPSTREAM Srp54k & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
3R	7321697	3R_7321697_SNP [dm3] 3R_11495975_SNP [dm6]	C	T	2.045e^-4	0.89	INTERGENIC
2R	13556727	2R_13556727_SNP [dm3] 2R_17669222_SNP [dm6]	A	T	2.046e^-4	0.89	UTR_3_PRIME eIF3-S8 UPSTREAM CG30108 & 1 other DOWNSTREAM eIF3-S8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
2R	14646929	2R_14646929_SNP [dm3] 2R_18759424_SNP [dm6]	G	C	2.053e^-4	0.89	SYNONYMOUS_CODING Jabba
2L	1210136	2L_1210136_SNP [dm3] 2L_1210136_SNP [dm6]	T	A	2.063e^-4	0.89	INTERGENIC
3L	9873577	3L_9873577_SNP [dm3] 3L_9880477_SNP [dm6]	T	C	2.071e^-4	0.89	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
X	12798502	X_12798502_SNP [dm3] X_12904469_SNP [dm6]	C	T	2.072e^-4	0.89	SYNONYMOUS_CODING CG4404 UPSTREAM CG4407	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11789578	3L_11789578_SNP [dm3] 3L_11796478_SNP [dm6]	G	A	2.083e^-4	0.89	SYNONYMOUS_CODING Klp68D	TF binding site mE1_TFBS_sens
3L	20176231	3L_20176231_SNP [dm3] 3L_20183131_SNP [dm6]	T	A	2.083e^-4	0.89	INTRON CG42674	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2646631	3L_2646631_SNP [dm3] 3L_2646631_SNP [dm6]	T	A	2.084e^-4	0.89	UTR_3_PRIME CG1143 DOWNSTREAM CG1143	TF binding site mE1_TFBS_cad
2L	10085825	2L_10085825_SNP [dm3] 2L_10085825_SNP [dm6]	C	T	2.090e^-4	0.89	INTRON CG44153
3L	12568589	3L_12568589_SNP [dm3] 3L_12575489_SNP [dm6]	G	T	2.096e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	20262315	X_20262315_DEL [dm3] X_20391288_DEL [dm6]	TGATGTTTCTTAT...	T	2.118e^-4	0.89	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18908808	2L_18908808_SNP [dm3] 2L_18908808_SNP [dm6]	G	T	2.130e^-4	0.89	INTERGENIC
X	4513872	X_4513872_INS [dm3] X_4619839_INS [dm6]	CG	ATCTCTTATT	2.130e^-4	0.89	INTRON peb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	12019463	3L_12019463_SNP [dm3] 3L_12026363_SNP [dm6]	G	A	2.137e^-4	0.89	INTRON rols
2R	14647134	2R_14647134_DEL [dm3] 2R_18759629_DEL [dm6]	AG	T	2.138e^-4	0.89	SPLICE_SITE_REGION Jabba INTRON Jabba
2R	16861770	2R_16861770_SNP [dm3] 2R_20974265_SNP [dm6]	T	A	2.160e^-4	0.89	UPSTREAM CG15649 INTERGENIC
3L	20635410	3L_20635410_SNP [dm3] 3L_20642310_SNP [dm6]	T	A	2.162e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
X	5462709	X_5462709_DEL [dm3] X_5568676_DEL [dm6]	TT	T	2.176e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	5152409	3L_5152409_DEL [dm3] 3L_5159309_DEL [dm6]	GTG	G	2.182e^-4	0.89	UTR_3_PRIME shep
2R	8479079	2R_8479079_SNP [dm3] 2R_12591574_SNP [dm6]	G	T	2.182e^-4	0.89	DOWNSTREAM CR30055 INTRON Sin3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
3L	741724	3L_741724_INS [dm3] 3L_741724_INS [dm6]	C	CGC	2.188e^-4	0.89	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	3377141	X_3377141_SNP [dm3] X_3483108_SNP [dm6]	G	C	2.190e^-4	0.89	UPSTREAM CG10804 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	7148303	2R_7148303_SNP [dm3] 2R_11260798_SNP [dm6]	C	G	2.192e^-4	0.89	UPSTREAM Cpr47Ec DOWNSTREAM Cpr47Ed INTERGENIC
2R	11330408	2R_11330408_SNP [dm3] 2R_15442903_SNP [dm6]	C	T	2.193e^-4	0.89	INTRON CG43729
3L	4839458	3L_4839458_SNP [dm3] 3L_4839458_SNP [dm6]	T	A	2.202e^-4	0.89	START_GAINED CG13707 UTR_5_PRIME CG13707 INTRON CG13707
2R	10382797	2R_10382797_SNP [dm3] 2R_14495292_SNP [dm6]	A	G	2.207e^-4	0.89	SYNONYMOUS_CODING L	TF binding site mE1_TFBS_cad
2L	15090507	2L_15090507_SNP [dm3] 2L_15090507_SNP [dm6]	T	C	2.216e^-4	0.89	INTRON CG15270
3R	4342921	3R_4342921_SNP [dm3] 3R_8517199_SNP [dm6]	C	T	2.217e^-4	0.89	UPSTREAM CG11737 INTERGENIC
X	16685557	X_16685557_SNP [dm3] X_16791524_SNP [dm6]	T	A	2.225e^-4	0.89	UPSTREAM CG4768 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14815037	3L_14815037_SNP [dm3] 3L_14821937_SNP [dm6]	A	C	2.236e^-4	0.89	INTRON CG17839
3R	25759471	3R_25759471_SNP [dm3] 3R_29933749_SNP [dm6]	T	A	2.238e^-4	0.89	SYNONYMOUS_CODING CG42557 UTR_5_PRIME CG42558 UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16864584	2R_16864584_SNP [dm3] 2R_20977079_SNP [dm6]	G	A	2.240e^-4	0.89	UTR_5_PRIME CG9344 DOWNSTREAM CG15650 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	22297776	2L_22297776_SNP [dm3] 2L_22297776_SNP [dm6]	G	A	2.243e^-4	0.89	INTERGENIC	transposable element FlyBase
X	18115559	X_18115559_SNP [dm3] X_18221526_SNP [dm6]	C	T	2.246e^-4	0.89	INTRON CG33639	TF binding site mE1_TFBS_chinmo
2R	4953916	2R_4953916_SNP [dm3] 2R_9066411_SNP [dm6]	G	T	2.254e^-4	0.89	INTRON ana	regulatory region REDfly_CRMs
2R	18542315	2R_18542315_SNP [dm3] 2R_22654810_SNP [dm6]	A	T	2.255e^-4	0.89	UTR_3_PRIME CG30196 UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other	TF binding site mE1_TFBS_cad
3R	27129738	3R_27129738_SNP [dm3] 3R_31304016_SNP [dm6]	G	A	2.260e^-4	0.89	SYNONYMOUS_CODING CG11340
3R	18739168	3R_18739168_SNP [dm3] 3R_22913446_SNP [dm6]	A	T	2.279e^-4	0.89	INTRON klg
X	6451143	X_6451143_SNP [dm3] X_6557110_SNP [dm6]	A	C	2.301e^-4	0.89	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
3L	4556696	3L_4556696_SNP [dm3] 3L_4556696_SNP [dm6]	T	A	2.303e^-4	0.89	UPSTREAM CG42540 INTRON CG42540
3R	16709971	3R_16709971_SNP [dm3] 3R_20884249_SNP [dm6]	A	T	2.304e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_cad
3L	1085003	3L_1085003_DEL [dm3] 3L_1085003_DEL [dm6]	AGTTTGGCCG	A	2.312e^-4	0.89	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	17460040	3L_17460040_INS [dm3] 3L_17466940_INS [dm6]	T	GG	2.338e^-4	0.89	DOWNSTREAM CG7603 INTERGENIC
2R	8479078	2R_8479078_SNP [dm3] 2R_12591573_SNP [dm6]	G	T	2.342e^-4	0.89	DOWNSTREAM CR30055 INTRON Sin3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2R	16866821	2R_16866821_SNP [dm3] 2R_20979316_SNP [dm6]	G	T	2.352e^-4	0.89	UTR_5_PRIME CG9313 UPSTREAM CG9313 & 1 other
3L	11276693	3L_11276693_SNP [dm3] 3L_11283593_SNP [dm6]	A	G	2.353e^-4	0.89	INTERGENIC
X	9943554	X_9943554_SNP [dm3] X_10049521_SNP [dm6]	G	T	2.355e^-4	0.89	NON_SYNONYMOUS_CODING Cht6
3R	14344614	3R_14344614_SNP [dm3] 3R_18518892_SNP [dm6]	T	A	2.357e^-4	0.89	INTRON fru
2L	1231977	2L_1231977_SNP [dm3] 2L_1231977_SNP [dm6]	T	C	2.357e^-4	0.89	INTERGENIC
3L	18563584	3L_18563584_SNP [dm3] 3L_18570484_SNP [dm6]	A	G	2.362e^-4	0.89	INTRON AstC-R1
2R	10846476	2R_10846476_SNP [dm3] 2R_14958971_SNP [dm6]	T	C	2.366e^-4	0.89	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	16957224	2L_16957224_SNP [dm3] 2L_16957224_SNP [dm6]	A	G	2.373e^-4	0.89	INTERGENIC
2R	3265694	2R_3265694_SNP [dm3] 2R_7378189_SNP [dm6]	C	T	2.373e^-4	0.89	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
2R	8137681	2R_8137681_SNP [dm3] 2R_12250176_SNP [dm6]	A	C	2.387e^-4	0.89	INTERGENIC
X	12795357	X_12795357_SNP [dm3] X_12901324_SNP [dm6]	A	C	2.401e^-4	0.89	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	16863939	2R_16863939_SNP [dm3] 2R_20976434_SNP [dm6]	T	A	2.403e^-4	0.89	UPSTREAM CG9344 INTRON CG34115	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13570318	3R_13570318_SNP [dm3] 3R_17744596_SNP [dm6]	C	A	2.404e^-4	0.89	INTRON TyrRII	TF binding site mE1_TFBS_cad
3R	27860036	3R_27860036_DEL [dm3] 3R_32034314_DEL [dm6]	TTGGAGCTGCAAAAAATGAC...	T	2.419e^-4	0.89	INTERGENIC
3R	25026972	3R_25026972_SNP [dm3] 3R_29201250_SNP [dm6]	G	A	2.422e^-4	0.89	SYNONYMOUS_CODING CG11899 DOWNSTREAM Mesh1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20860404	2L_20860404_SNP [dm3] 2L_20860404_SNP [dm6]	C	T	2.423e^-4	0.89	INTRON CG9336
3L	1167757	3L_1167757_SNP [dm3] 3L_1167757_SNP [dm6]	C	T	2.436e^-4	0.89	INTRON bab2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12021044	X_12021044_INS [dm3] X_12127011_INS [dm6]	T	TT	2.446e^-4	0.89	INTRON Ten-a
2R	6929352	2R_6929352_SNP [dm3] 2R_11041847_SNP [dm6]	A	T	2.448e^-4	0.89	INTRON luna	TF binding site mE1_TFBS_cad
X	5826875	X_5826875_SNP [dm3] X_5932842_SNP [dm6]	A	T	2.467e^-4	0.89	INTRON CG3726
3R	26700759	3R_26700759_SNP [dm3] 3R_30875037_SNP [dm6]	G	C	2.474e^-4	0.89	SYNONYMOUS_CODING CG15546	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17861776	2L_17861776_SNP [dm3] 2L_17861776_SNP [dm6]	T	A	2.481e^-4	0.89	INTRON CadN2
2L	16619019	2L_16619019_SNP [dm3] 2L_16619019_SNP [dm6]	T	A	2.482e^-4	0.89	INTRON CG42389	TF binding site BDTNP1_TFBS_dl
2R	9715965	2R_9715965_SNP [dm3] 2R_13828460_SNP [dm6]	G	T	2.483e^-4	0.89	UPSTREAM CG6329 INTRON CG6329	TF binding site BDTNP1_TFBS_dl
X	12795293	X_12795293_SNP [dm3] X_12901260_SNP [dm6]	C	A	2.488e^-4	0.89	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	9423097	X_9423097_SNP [dm3] X_9529064_SNP [dm6]	T	A	2.489e^-4	0.89	INTRON CG32700
2R	18542312	2R_18542312_SNP [dm3] 2R_22654807_SNP [dm6]	C	G	2.495e^-4	0.89	UTR_3_PRIME CG30196 UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other	TF binding site mE1_TFBS_cad
3R	4341488	3R_4341488_SNP [dm3] 3R_8515766_SNP [dm6]	G	A	2.505e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	10785598	2L_10785598_SNP [dm3] 2L_10785598_SNP [dm6]	A	T	2.506e^-4	0.89	INTRON CG31869 EXON CR44582
2L	12418606	2L_12418606_SNP [dm3] 2L_12418606_SNP [dm6]	C	T	2.507e^-4	0.89	INTRON vir-1
X	6898468	X_6898468_SNP [dm3] X_7004435_SNP [dm6]	C	T	2.517e^-4	0.89	DOWNSTREAM Inx2 INTRON Inx7
3L	1561176	3L_1561176_SNP [dm3] 3L_1561176_SNP [dm6]	C	T	2.521e^-4	0.89	SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	11168350	3L_11168350_SNP [dm3] 3L_11175250_SNP [dm6]	C	T	2.524e^-4	0.89	INTRON CG14142	TF binding site mE1_TFBS_cad
3L	4152861	3L_4152861_SNP [dm3] 3L_4152861_SNP [dm6]	G	A	2.536e^-4	0.89	DOWNSTREAM CG1299 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17786779	2R_17786779_SNP [dm3] 2R_21899274_SNP [dm6]	T	C	2.537e^-4	0.89	INTRON Fili
3R	9306338	3R_9306338_SNP [dm3] 3R_13480616_SNP [dm6]	T	A	2.538e^-4	0.89	INTERGENIC
3L	4839460	3L_4839460_SNP [dm3] 3L_4839460_SNP [dm6]	A	G	2.539e^-4	0.89	UTR_5_PRIME CG13707 INTRON CG13707
X	7859843	X_7859843_SNP [dm3] X_7965810_SNP [dm6]	G	A	2.552e^-4	0.89	INTRON sn & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	588419	2L_588419_SNP [dm3] 2L_588419_SNP [dm6]	T	A	2.560e^-4	0.89	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
3R	10122680	3R_10122680_SNP [dm3] 3R_14296958_SNP [dm6]	T	A	2.562e^-4	0.89	INTRON CG12207
2R	16248235	2R_16248235_SNP [dm3] 2R_20360730_SNP [dm6]	C	G	2.565e^-4	0.89	INTERGENIC
2L	4933597	2L_4933597_SNP [dm3] 2L_4933597_SNP [dm6]	T	C	2.575e^-4	0.89	SYNONYMOUS_CODING hoe2
3L	9575251	3L_9575251_SNP [dm3] 3L_9582151_SNP [dm6]	C	A	2.582e^-4	0.89	INTRON CG42673
3L	8711596	3L_8711596_SNP [dm3] 3L_8718496_SNP [dm6]	G	A	2.587e^-4	0.89	DOWNSTREAM SrpRbeta INTERGENIC
3R	10840151	3R_10840151_SNP [dm3] 3R_15014429_SNP [dm6]	T	A	2.591e^-4	0.89	UPSTREAM CG14861 INTERGENIC
2R	13772991	2R_13772991_SNP [dm3] 2R_17885486_SNP [dm6]	C	T	2.594e^-4	0.89	INTRON Elk
X	11409403	X_11409403_SNP [dm3] X_11515370_SNP [dm6]	A	T	2.597e^-4	0.89	INTRON Drak	TF binding site mE1_TFBS_Kr
2R	3079481	2R_3079481_SNP [dm3] 2R_7191976_SNP [dm6]	T	G	2.597e^-4	0.89	INTRON pk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12745588	3R_12745588_SNP [dm3] 3R_16919866_SNP [dm6]	A	G	2.607e^-4	0.89	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	4821762	3L_4821762_DEL [dm3] 3L_4821762_DEL [dm6]	ATTCTAGCACA...	A	2.613e^-4	0.89	INTRON Dhc64C
3L	7257565	3L_7257565_SNP [dm3] 3L_7264465_SNP [dm6]	C	T	2.613e^-4	0.89	UPSTREAM CG14830 INTERGENIC
2L	7202014	2L_7202014_SNP [dm3] 2L_7202014_SNP [dm6]	C	A	2.615e^-4	0.89	INTRON CG4502
3L	3207062	3L_3207062_SNP [dm3] 3L_3207062_SNP [dm6]	C	A	2.615e^-4	0.89	SYNONYMOUS_CODING CG32269 UTR_3_PRIME CG32270 UPSTREAM CG33160 INTRON gry	TF binding site mE1_TFBS_cad
3L	15213586	3L_15213586_SNP [dm3] 3L_15220486_SNP [dm6]	T	G	2.616e^-4	0.89	INTERGENIC
3L	19495062	3L_19495062_SNP [dm3] 3L_19501962_SNP [dm6]	T	A	2.624e^-4	0.89	SYNONYMOUS_CODING CG9452
3R	8274107	3R_8274107_SNP [dm3] 3R_12448385_SNP [dm6]	G	A	2.629e^-4	0.89	NON_SYNONYMOUS_CODING CG5538 UPSTREAM CG18549 DOWNSTREAM Desat1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22618992	3R_22618992_SNP [dm3] 3R_26793270_SNP [dm6]	A	G	2.639e^-4	0.89	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11872612	2R_11872612_SNP [dm3] 2R_15985107_SNP [dm6]	T	C	2.644e^-4	0.89	SYNONYMOUS_CODING Strn-Mlck
X	3110621	X_3110621_SNP [dm3] X_3216588_SNP [dm6]	G	C	2.648e^-4	0.89	INTRON dnc
X	7617541	X_7617541_SNP [dm3] X_7723508_SNP [dm6]	C	A	2.655e^-4	0.89	SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	18430662	X_18430662_SNP [dm3] X_18536629_SNP [dm6]	G	A	2.657e^-4	0.89	INTRON Bx
3L	10702270	3L_10702270_SNP [dm3] 3L_10709170_SNP [dm6]	C	A	2.675e^-4	0.89	INTERGENIC
X	14154318	X_14154318_SNP [dm3] X_14260285_SNP [dm6]	T	G	2.677e^-4	0.89	UPSTREAM CG1461 INTERGENIC
2R	16253834	2R_16253834_SNP [dm3] 2R_20366329_SNP [dm6]	C	T	2.678e^-4	0.89	INTERGENIC
X	12795209	X_12795209_SNP [dm3] X_12901176_SNP [dm6]	G	T	2.680e^-4	0.89	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	2311636	X_2311636_SNP [dm3] X_2417603_SNP [dm6]	A	T	2.680e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_sens
3L	14811233	3L_14811233_SNP [dm3] 3L_14818133_SNP [dm6]	C	T	2.686e^-4	0.89	INTRON CG17839
X	7897466	X_7897466_SNP [dm3] X_8003433_SNP [dm6]	T	C	2.687e^-4	0.89	INTRON Tbh
3R	25026945	3R_25026945_SNP [dm3] 3R_29201223_SNP [dm6]	C	G	2.687e^-4	0.89	SYNONYMOUS_CODING CG11899 DOWNSTREAM Mesh1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4928467	X_4928467_SNP [dm3] X_5034434_SNP [dm6]	T	A	2.692e^-4	0.89	INTRON CR44833
2L	19765108	2L_19765108_DEL [dm3] 2L_19765108_DEL [dm6]	CG	A	2.693e^-4	0.89	UPSTREAM fbp DOWNSTREAM bsh INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	26486380	3R_26486380_SNP [dm3] 3R_30660658_SNP [dm6]	A	T	2.694e^-4	0.89	INTERGENIC
X	9536660	X_9536660_SNP [dm3] X_9642627_SNP [dm6]	T	A	2.697e^-4	0.89	INTRON l_1_G0232	TF binding site mE1_TFBS_inv
3R	4313161	3R_4313161_SNP [dm3] 3R_8487439_SNP [dm6]	G	A	2.700e^-4	0.89	INTERGENIC
3L	1042795	3L_1042795_SNP [dm3] 3L_1042795_SNP [dm6]	A	T	2.701e^-4	0.89	INTRON bab1
2R	13769160	2R_13769160_SNP [dm3] 2R_17881655_SNP [dm6]	G	T	2.720e^-4	0.89	NON_SYNONYMOUS_CODING CG30110 INTRON Elk
2R	9147190	2R_9147190_SNP [dm3] 2R_13259685_SNP [dm6]	G	A	2.723e^-4	0.89	UPSTREAM CG42319 INTERGENIC
3R	20509028	3R_20509028_SNP [dm3] 3R_24683306_SNP [dm6]	T	A	2.725e^-4	0.89	INTRON slo
2R	17031163	2R_17031163_SNP [dm3] 2R_21143658_SNP [dm6]	G	A	2.731e^-4	0.89	UTR_5_PRIME Xbp1 DOWNSTREAM CG9406	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA
3L	391184	3L_391184_SNP [dm3] 3L_391184_SNP [dm6]	C	A	2.741e^-4	0.89	DOWNSTREAM CR45378 INTRON trh
3R	21011193	3R_21011193_SNP [dm3] 3R_25185471_SNP [dm6]	G	A	2.750e^-4	0.89	INTRON lobo & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8222268	X_8222268_SNP [dm3] X_8328235_SNP [dm6]	A	T	2.751e^-4	0.89	INTRON nAChRalpha3
2L	10085047	2L_10085047_SNP [dm3] 2L_10085047_SNP [dm6]	G	C	2.751e^-4	0.89	INTRON CG44153
3L	7257568	3L_7257568_SNP [dm3] 3L_7264468_SNP [dm6]	G	A	2.752e^-4	0.89	UPSTREAM CG14830 INTERGENIC
X	16791303	X_16791303_SNP [dm3] X_16897270_SNP [dm6]	A	T	2.761e^-4	0.89	UPSTREAM CG33252 INTERGENIC
3R	20225939	3R_20225939_SNP [dm3] 3R_24400217_SNP [dm6]	G	T	2.766e^-4	0.89	UTR_3_PRIME nAChRalpha1 DOWNSTREAM nAChRalpha1
2R	16436597	2R_16436597_SNP [dm3] 2R_20549092_SNP [dm6]	C	T	2.769e^-4	0.89	NON_SYNONYMOUS_CODING Obp57d UTR_3_PRIME Cpr57A UPSTREAM Obp57e DOWNSTREAM Cpr57A	regulatory region REDfly_CRMs
2L	12415089	2L_12415089_SNP [dm3] 2L_12415089_SNP [dm6]	G	A	2.776e^-4	0.89	INTRON vir-1
2L	4933968	2L_4933968_SNP [dm3] 2L_4933968_SNP [dm6]	G	A	2.794e^-4	0.89	INTRON hoe2
3R	22518319	3R_22518319_SNP [dm3] 3R_26692597_SNP [dm6]	C	T	2.800e^-4	0.89	UTR_3_PRIME TwdlQ	TF binding site mE1_TFBS_cad
3R	25759468	3R_25759468_SNP [dm3] 3R_29933746_SNP [dm6]	C	T	2.800e^-4	0.89	SYNONYMOUS_CODING CG42557 UTR_5_PRIME CG42558 UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9504688	2L_9504688_SNP [dm3] 2L_9504688_SNP [dm6]	G	A	2.809e^-4	0.89	SYNONYMOUS_CODING CG33298
2R	19317545	2R_19317545_SNP [dm3] 2R_23430022_SNP [dm6]	G	T	2.817e^-4	0.89	INTRON CG9815
3R	24416328	3R_24416328_SNP [dm3] 3R_28590606_SNP [dm6]	C	T	2.829e^-4	0.89	EXON MRE23	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	1610355	3L_1610355_SNP [dm3] 3L_1610355_SNP [dm6]	C	A	2.830e^-4	0.89	DOWNSTREAM CG12105 INTRON CG33791 & 1 other
2R	9131327	2R_9131327_SNP [dm3] 2R_13243822_SNP [dm6]	G	A	2.834e^-4	0.89	DOWNSTREAM CR45278 INTERGENIC
2L	18376134	2L_18376134_SNP [dm3] 2L_18376134_SNP [dm6]	C	A	2.842e^-4	0.89	INTRON Fas3	TF binding site mE1_TFBS_sbb
2L	14270848	2L_14270848_SNP [dm3] 2L_14270848_SNP [dm6]	G	C	2.848e^-4	0.89	INTRON wb
2L	7451999	2L_7451999_SNP [dm3] 2L_7451999_SNP [dm6]	G	A	2.850e^-4	0.89	UPSTREAM santa-maria DOWNSTREAM Gr28a INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3R	14394837	3R_14394837_SNP [dm3] 3R_18569115_SNP [dm6]	A	T	2.851e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5970480	2R_5970480_SNP [dm3] 2R_10082975_SNP [dm6]	C	T	2.860e^-4	0.89	SPLICE_SITE_REGION egr INTRON egr
2L	8702856	2L_8702856_SNP [dm3] 2L_8702856_SNP [dm6]	A	T	2.867e^-4	0.89	UPSTREAM CR44992 INTRON Hnf4
2R	7961037	2R_7961037_SNP [dm3] 2R_12073532_SNP [dm6]	G	A	2.875e^-4	0.89	INTRON CG8888
2R	3080414	2R_3080414_SNP [dm3] 2R_7192909_SNP [dm6]	C	A	2.876e^-4	0.89	UTR_5_PRIME pk INTRON pk	TF binding site mE1_TFBS_cad
3L	14079700	3L_14079700_SNP [dm3] 3L_14086600_SNP [dm6]	G	T	2.880e^-4	0.89	DOWNSTREAM CG8100 INTERGENIC
X	16442154	X_16442154_SNP [dm3] X_16548121_SNP [dm6]	A	C	2.883e^-4	0.89	UPSTREAM CG9902 DOWNSTREAM Arp2 INTERGENIC	transposable element FlyBase
2L	9877897	2L_9877897_SNP [dm3] 2L_9877897_SNP [dm6]	G	T	2.888e^-4	0.89	UTR_5_PRIME nAChRalpha6 INTRON nAChRalpha6
2L	15126711	2L_15126711_SNP [dm3] 2L_15126711_SNP [dm6]	A	G	2.900e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14015164	2R_14015164_SNP [dm3] 2R_18127659_SNP [dm6]	G	C	2.905e^-4	0.89	UPSTREAM Dip3 INTRON Spn55B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2L	10229378	2L_10229378_SNP [dm3] 2L_10229378_SNP [dm6]	T	C	2.912e^-4	0.89	INTRON CG5694
3L	11276747	3L_11276747_SNP [dm3] 3L_11283647_SNP [dm6]	C	T	2.913e^-4	0.89	INTERGENIC
X	18463198	X_18463198_SNP [dm3] X_18569165_SNP [dm6]	A	G	2.924e^-4	0.89	INTRON Bx	TF binding site mE1_TFBS_chinmo
3R	13451266	3R_13451266_SNP [dm3] 3R_17625544_SNP [dm6]	C	T	2.927e^-4	0.89	UPSTREAM tRNA:T:90Ca & 1 other INTRON AttD
2R	5234075	2R_5234075_SNP [dm3] 2R_9346570_SNP [dm6]	T	G	2.928e^-4	0.89	SYNONYMOUS_CODING Or45a INTRON CG13954 & 1 other	TF binding site mE1_TFBS_chinmo
2L	16293678	2L_16293678_SNP [dm3] 2L_16293678_SNP [dm6]	A	G	2.930e^-4	0.89	UPSTREAM CG13258 & 1 other EXON CR44899
2R	7961322	2R_7961322_SNP [dm3] 2R_12073817_SNP [dm6]	C	T	2.931e^-4	0.89	INTRON CG8888
3L	743013	3L_743013_SNP [dm3] 3L_743013_SNP [dm6]	G	A	2.932e^-4	0.89	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	7201933	2L_7201933_SNP [dm3] 2L_7201933_SNP [dm6]	T	A	2.936e^-4	0.89	INTRON CG4502
2R	7327665	2R_7327665_SNP [dm3] 2R_11440160_SNP [dm6]	C	G	2.937e^-4	0.89	INTRON CG7777
2L	21911710	2L_21911710_INS [dm3] 2L_21911710_INS [dm6]	A	AAATA	2.953e^-4	0.89	INTERGENIC
3L	11276913	3L_11276913_SNP [dm3] 3L_11283813_SNP [dm6]	C	G	2.964e^-4	0.89	UPSTREAM CR45404 INTERGENIC
2R	12456090	2R_12456090_SNP [dm3] 2R_16568585_SNP [dm6]	G	A	2.970e^-4	0.89	SYNONYMOUS_CODING CG4945	TF binding site mE1_TFBS_cad
3R	15154147	3R_15154147_SNP [dm3] 3R_19328425_SNP [dm6]	T	C	2.972e^-4	0.89	UPSTREAM CR44175 INTERGENIC
3R	3962796	3R_3962796_SNP [dm3] 3R_8137074_SNP [dm6]	C	T	2.979e^-4	0.89	INTERGENIC
3R	26618205	3R_26618205_SNP [dm3] 3R_30792483_SNP [dm6]	C	T	2.981e^-4	0.89	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
3R	18753175	3R_18753175_SNP [dm3] 3R_22927453_SNP [dm6]	A	C	2.982e^-4	0.89	INTRON klg
3R	14854201	3R_14854201_SNP [dm3] 3R_19028479_SNP [dm6]	C	T	2.983e^-4	0.89	NON_SYNONYMOUS_CODING gatA UPSTREAM P5cr DOWNSTREAM NP15.6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20179123	3L_20179123_SNP [dm3] 3L_20186023_SNP [dm6]	T	A	2.983e^-4	0.89	UPSTREAM CG42674 INTRON CG42674	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	15903310	2R_15903310_DEL [dm3] 2R_20015805_DEL [dm6]	TGA	T	2.987e^-4	0.89	DOWNSTREAM CR44630 INTERGENIC
2L	11550949	2L_11550949_SNP [dm3] 2L_11550949_SNP [dm6]	C	T	3.001e^-4	0.89	UPSTREAM CR44494 INTERGENIC
3L	14931260	3L_14931260_SNP [dm3] 3L_14938160_SNP [dm6]	G	C	3.006e^-4	0.89	INTRON DCX-EMAP
3L	14835275	3L_14835275_INS [dm3] 3L_14842175_INS [dm6]	T	TTGCAA	3.011e^-4	0.89	INTRON CG17839
2L	11219801	2L_11219801_SNP [dm3] 2L_11219801_SNP [dm6]	T	A	3.015e^-4	0.89	INTRON ab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	16003528	3R_16003528_SNP [dm3] 3R_20177806_SNP [dm6]	G	A	3.017e^-4	0.89	INTERGENIC
2R	14978887	2R_14978887_SNP [dm3] 2R_19091382_SNP [dm6]	G	A	3.021e^-4	0.89	SYNONYMOUS_CODING 5-HT1A
2L	12260510	2L_12260510_SNP [dm3] 2L_12260510_SNP [dm6]	T	C	3.028e^-4	0.89	INTRON aret
3R	26618148	3R_26618148_SNP [dm3] 3R_30792426_SNP [dm6]	T	G	3.028e^-4	0.89	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
3R	15130796	3R_15130796_SNP [dm3] 3R_19305074_SNP [dm6]	G	A	3.029e^-4	0.89	SYNONYMOUS_CODING Dl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17665322	3L_17665322_SNP [dm3] 3L_17672222_SNP [dm6]	T	C	3.031e^-4	0.89	INTRON CG34251
3L	1406565	3L_1406565_SNP [dm3] 3L_1406565_SNP [dm6]	A	G	3.033e^-4	0.89	INTRON Ptp61F
2R	6798005	2R_6798005_SNP [dm3] 2R_10910500_SNP [dm6]	C	T	3.033e^-4	0.89	DOWNSTREAM Obp47a INTERGENIC
2L	3523992	2L_3523992_SNP [dm3] 2L_3523992_SNP [dm6]	C	A	3.047e^-4	0.89	UTR_5_PRIME Sr-CIV
X	12795289	X_12795289_SNP [dm3] X_12901256_SNP [dm6]	G	A	3.058e^-4	0.89	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	6606946	2R_6606946_INS [dm3] 2R_10719441_INS [dm6]	CCC	ATTTAA	3.066e^-4	0.89	INTRON stan
3L	3315081	3L_3315081_SNP [dm3] 3L_3315081_SNP [dm6]	T	C	3.066e^-4	0.89	SYNONYMOUS_CODING Drsl3 UPSTREAM Drsl4 DOWNSTREAM Drsl2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18937144	2L_18937144_SNP [dm3] 2L_18937144_SNP [dm6]	G	A	3.067e^-4	0.89	INTRON ssp3	TF binding site BDTNP1_TFBS_dl
3R	27130631	3R_27130631_SNP [dm3] 3R_31304909_SNP [dm6]	G	C	3.070e^-4	0.89	INTRON CG11340	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7257559	3L_7257559_SNP [dm3] 3L_7264459_SNP [dm6]	G	A	3.073e^-4	0.89	UPSTREAM CG14830 INTERGENIC
X	2690048	X_2690048_SNP [dm3] X_2796015_SNP [dm6]	A	C	3.075e^-4	0.89	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	1903336	3L_1903336_SNP [dm3] 3L_1903336_SNP [dm6]	G	A	3.081e^-4	0.89	INTRON CG1887
X	9721384	X_9721384_DEL [dm3] X_9827351_DEL [dm6]	AA	A	3.085e^-4	0.89	INTRON CG32698
2R	11540873	2R_11540873_SNP [dm3] 2R_15653368_SNP [dm6]	G	C	3.086e^-4	0.89	INTRON CG42524
X	6898428	X_6898428_SNP [dm3] X_7004395_SNP [dm6]	A	C	3.089e^-4	0.89	DOWNSTREAM Inx2 INTRON Inx7
2R	13932152	2R_13932152_SNP [dm3] 2R_18044647_SNP [dm6]	T	G	3.095e^-4	0.89	SYNONYMOUS_CODING CG5770 UPSTREAM CG5773
2L	9463941	2L_9463941_SNP [dm3] 2L_9463941_SNP [dm6]	T	C	3.097e^-4	0.89	UTR_3_PRIME numb DOWNSTREAM numb
2R	11338512	2R_11338512_SNP [dm3] 2R_15451007_SNP [dm6]	G	T	3.101e^-4	0.89	INTRON CG43729	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9487588	2L_9487588_SNP [dm3] 2L_9487588_SNP [dm6]	A	G	3.104e^-4	0.89	INTERGENIC
2R	11872516	2R_11872516_SNP [dm3] 2R_15985011_SNP [dm6]	T	A	3.104e^-4	0.89	SYNONYMOUS_CODING Strn-Mlck
X	16791299	X_16791299_SNP [dm3] X_16897266_SNP [dm6]	A	T	3.108e^-4	0.89	UPSTREAM CG33252 INTERGENIC
3L	12437452	3L_12437452_SNP [dm3] 3L_12444352_SNP [dm6]	C	T	3.116e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14689608	2L_14689608_SNP [dm3] 2L_14689608_SNP [dm6]	A	G	3.118e^-4	0.89	UPSTREAM osp INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4421150	2L_4421150_SNP [dm3] 2L_4421150_SNP [dm6]	G	T	3.123e^-4	0.89	INTRON CG15431
3L	16325313	3L_16325313_SNP [dm3] 3L_16332213_SNP [dm6]	T	G	3.132e^-4	0.89	NON_SYNONYMOUS_CODING retinin DOWNSTREAM CG33061 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	3207563	2R_3207563_SNP [dm3] 2R_7320058_SNP [dm6]	A	G	3.133e^-4	0.89	UTR_3_PRIME Dscam1
3R	5129982	3R_5129982_SNP [dm3] 3R_9304260_SNP [dm6]	C	G	3.134e^-4	0.89	INTRON CG8861
X	4094020	X_4094020_SNP [dm3] X_4199987_SNP [dm6]	T	C	3.147e^-4	0.89	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	20813588	X_20813588_SNP [dm3] X_20942561_SNP [dm6]	A	T	3.159e^-4	0.89	INTERGENIC
X	16791323	X_16791323_SNP [dm3] X_16897290_SNP [dm6]	A	T	3.159e^-4	0.89	UPSTREAM CG33252 INTERGENIC
3L	6023720	3L_6023720_INS [dm3] 3L_6030620_INS [dm6]	TG	GAAGGA	3.165e^-4	0.89	INTERGENIC
3L	10793233	3L_10793233_SNP [dm3] 3L_10800133_SNP [dm6]	A	C	3.174e^-4	0.89	INTERGENIC
2L	5557570	2L_5557570_SNP [dm3] 2L_5557570_SNP [dm6]	T	A	3.175e^-4	0.89	INTRON GluRIIA
3R	22618986	3R_22618986_SNP [dm3] 3R_26793264_SNP [dm6]	A	T	3.186e^-4	0.89	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15903314	2R_15903314_SNP [dm3] 2R_20015809_SNP [dm6]	A	C	3.186e^-4	0.89	DOWNSTREAM CR44630 INTERGENIC
3R	13360593	3R_13360593_SNP [dm3] 3R_17534871_SNP [dm6]	C	T	3.187e^-4	0.89	UTR_5_PRIME P5cr-2 UPSTREAM P5cr-2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
X	16876913	X_16876913_SNP [dm3] X_16982880_SNP [dm6]	T	G	3.200e^-4	0.89	INTRON CG45002
2L	21795611	2L_21795611_SNP [dm3] 2L_21795611_SNP [dm6]	C	G	3.210e^-4	0.89	UPSTREAM CG31612 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
3L	9873289	3L_9873289_SNP [dm3] 3L_9880189_SNP [dm6]	C	A	3.216e^-4	0.89	INTRON CG34382	TF binding site mE1_TFBS_chinmo
3L	10691485	3L_10691485_SNP [dm3] 3L_10698385_SNP [dm6]	T	G	3.221e^-4	0.89	INTERGENIC
2R	19297196	2R_19297196_SNP [dm3] 2R_23409673_SNP [dm6]	C	G	3.228e^-4	0.89	INTERGENIC
3L	14587326	3L_14587326_SNP [dm3] 3L_14594226_SNP [dm6]	G	A	3.228e^-4	0.89	INTRON HGTX
2R	9131300	2R_9131300_SNP [dm3] 2R_13243795_SNP [dm6]	A	T	3.230e^-4	0.89	DOWNSTREAM CR45278 INTERGENIC
2R	3692346	2R_3692346_SNP [dm3] 2R_7804841_SNP [dm6]	G	A	3.235e^-4	0.89	START_GAINED Nop17l UTR_5_PRIME Nop17l	TF binding site mE1_TFBS_cad
3R	19246529	3R_19246529_SNP [dm3] 3R_23420807_SNP [dm6]	G	A	3.237e^-4	0.89	INTRON CG4374
2L	16840396	2L_16840396_SNP [dm3] 2L_16840396_SNP [dm6]	T	C	3.244e^-4	0.89	UTR_3_PRIME SclA & 1 other INTRON SclA
3R	17353856	3R_17353856_SNP [dm3] 3R_21528134_SNP [dm6]	C	T	3.245e^-4	0.89	UTR_3_PRIME CG7956 DOWNSTREAM CG7956	TF binding site BDTNP1_TFBS_slp1
2L	15355720	2L_15355720_SNP [dm3] 2L_15355720_SNP [dm6]	T	G	3.248e^-4	0.89	INTERGENIC
3L	7721690	3L_7721690_SNP [dm3] 3L_7728590_SNP [dm6]	T	G	3.258e^-4	0.89	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
2R	9940463	2R_9940463_SNP [dm3] 2R_14052958_SNP [dm6]	G	C	3.267e^-4	0.89	INTRON mam
3L	13310278	3L_13310278_SNP [dm3] 3L_13317178_SNP [dm6]	C	G	3.268e^-4	0.89	INTERGENIC
X	21063578	X_21063578_SNP [dm3] X_21192551_SNP [dm6]	G	A	3.271e^-4	0.89	UPSTREAM CG14579 INTERGENIC
X	21150033	X_21150033_SNP [dm3] X_21279006_SNP [dm6]	A	T	3.281e^-4	0.89	INTRON CG32521
X	14182626	X_14182626_SNP [dm3] X_14288593_SNP [dm6]	G	A	3.285e^-4	0.89	DOWNSTREAM Muc12Ea INTRON CG9400
3R	21876370	3R_21876370_SNP [dm3] 3R_26050648_SNP [dm6]	T	G	3.300e^-4	0.89	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14086277	2R_14086277_SNP [dm3] 2R_18198772_SNP [dm6]	G	A	3.303e^-4	0.89	INTERGENIC
2R	6559077	2R_6559077_SNP [dm3] 2R_10671572_SNP [dm6]	C	T	3.304e^-4	0.89	INTERGENIC
3R	27130557	3R_27130557_SNP [dm3] 3R_31304835_SNP [dm6]	T	A	3.320e^-4	0.89	INTRON CG11340	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	11340875	2R_11340875_SNP [dm3] 2R_15453370_SNP [dm6]	C	T	3.323e^-4	0.89	INTRON CG43729
X	3376671	X_3376671_SNP [dm3] X_3482638_SNP [dm6]	G	A	3.323e^-4	0.89	UPSTREAM CG10802 & 1 other INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	22018071	3R_22018071_SNP [dm3] 3R_26192349_SNP [dm6]	A	T	3.334e^-4	0.89	INTERGENIC
2L	20685197	2L_20685197_SNP [dm3] 2L_20685197_SNP [dm6]	T	C	3.335e^-4	0.89	UTR_3_PRIME Hr38
3L	8207850	3L_8207850_SNP [dm3] 3L_8214750_SNP [dm6]	T	C	3.337e^-4	0.89	UPSTREAM CG8012 INTERGENIC
2R	12400738	2R_12400738_SNP [dm3] 2R_16513233_SNP [dm6]	C	G	3.342e^-4	0.89	INTRON Sema-2a
2R	13237688	2R_13237688_SNP [dm3] 2R_17350183_SNP [dm6]	T	C	3.344e^-4	0.89	INTRON mbl
X	5123133	X_5123133_SNP [dm3] X_5229100_SNP [dm6]	A	G	3.348e^-4	0.89	INTRON CG15465 & 1 other
3L	2646310	3L_2646310_SNP [dm3] 3L_2646310_SNP [dm6]	T	C	3.354e^-4	0.89	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	13136787	X_13136787_SNP [dm3] X_13242754_SNP [dm6]	C	T	3.357e^-4	0.89	INTRON mew	TF binding site BDTNP1_TFBS_da
X	6898563	X_6898563_SNP [dm3] X_7004530_SNP [dm6]	T	C	3.362e^-4	0.89	DOWNSTREAM Inx2 INTRON Inx7
3R	14850529	3R_14850529_SNP [dm3] 3R_19024807_SNP [dm6]	A	C	3.381e^-4	0.89	UTR_3_PRIME CG14286 UPSTREAM CG6005 & 1 other	TF binding site mE1_TFBS_cad
3L	11532947	3L_11532947_SNP [dm3] 3L_11539847_SNP [dm6]	A	G	3.384e^-4	0.89	INTRON Mob2
2R	7157912	2R_7157912_SNP [dm3] 2R_11270407_SNP [dm6]	G	C	3.388e^-4	0.89	INTRON Cpr47Ef
3R	27130562	3R_27130562_SNP [dm3] 3R_31304840_SNP [dm6]	G	T	3.390e^-4	0.89	INTRON CG11340	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	21183165	X_21183165_SNP [dm3] X_21312138_SNP [dm6]	T	A	3.393e^-4	0.89	SYNONYMOUS_CODING CG1801
X	12795292	X_12795292_SNP [dm3] X_12901259_SNP [dm6]	T	C	3.395e^-4	0.89	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	18216668	3L_18216668_SNP [dm3] 3L_18223568_SNP [dm6]	G	A	3.404e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_inv
X	2926643	X_2926643_SNP [dm3] X_3032610_SNP [dm6]	C	T	3.417e^-4	0.89	INTRON kirre
3R	18780271	3R_18780271_SNP [dm3] 3R_22954549_SNP [dm6]	G	A	3.419e^-4	0.89	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	14678270	2R_14678270_SNP [dm3] 2R_18790765_SNP [dm6]	T	C	3.447e^-4	0.89	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18418701	2R_18418701_SNP [dm3] 2R_22531196_SNP [dm6]	A	C	3.447e^-4	0.89	INTRON px
2R	18418702	2R_18418702_SNP [dm3] 2R_22531197_SNP [dm6]	C	A	3.447e^-4	0.89	INTRON px
X	16791292	X_16791292_SNP [dm3] X_16897259_SNP [dm6]	C	G	3.448e^-4	0.89	UPSTREAM CG33252 INTERGENIC
2R	11128197	2R_11128197_SNP [dm3] 2R_15240692_SNP [dm6]	C	T	3.448e^-4	0.89	INTRON Fs
3L	6100256	3L_6100256_SNP [dm3] 3L_6107156_SNP [dm6]	A	C	3.450e^-4	0.89	INTRON Ets65A	TF binding site mE1_TFBS_cad
2L	19569595	2L_19569595_SNP [dm3] 2L_19569595_SNP [dm6]	T	C	3.452e^-4	0.89	UPSTREAM mir-2a-2 DOWNSTREAM mir-2a-1 & 1 other INTRON spi
3R	26671686	3R_26671686_SNP [dm3] 3R_30845964_SNP [dm6]	T	A	3.455e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	16710155	3R_16710155_SNP [dm3] 3R_20884433_SNP [dm6]	A	G	3.457e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8711560	3L_8711560_SNP [dm3] 3L_8718460_SNP [dm6]	G	A	3.460e^-4	0.89	DOWNSTREAM SrpRbeta INTERGENIC
3L	8711562	3L_8711562_SNP [dm3] 3L_8718462_SNP [dm6]	A	T	3.460e^-4	0.89	DOWNSTREAM SrpRbeta INTERGENIC
3L	8711570	3L_8711570_SNP [dm3] 3L_8718470_SNP [dm6]	T	A	3.460e^-4	0.89	DOWNSTREAM SrpRbeta INTERGENIC
3R	2868309	3R_2868309_SNP [dm3] 3R_7042587_SNP [dm6]	G	A	3.462e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	7922249	2L_7922249_SNP [dm3] 2L_7922249_SNP [dm6]	G	A	3.473e^-4	0.89	INTRON Snoo
2R	7045208	2R_7045208_SNP [dm3] 2R_11157703_SNP [dm6]	C	A	3.476e^-4	0.89	INTRON CG13229
2L	19506514	2L_19506514_SNP [dm3] 2L_19506514_SNP [dm6]	C	G	3.481e^-4	0.89	INTRON CG10188
2R	11443520	2R_11443520_SNP [dm3] 2R_15556015_SNP [dm6]	G	A	3.483e^-4	0.89	SPLICE_SITE_DONOR CG12963 UPSTREAM CG12963 INTRON CG12963
3R	12324547	3R_12324547_SNP [dm3] 3R_16498825_SNP [dm6]	A	G	3.486e^-4	0.89	SYNONYMOUS_CODING Gr89a DOWNSTREAM decay	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11276624	3L_11276624_SNP [dm3] 3L_11283524_SNP [dm6]	G	A	3.486e^-4	0.89	INTERGENIC
3R	19264837	3R_19264837_DEL [dm3] 3R_23439115_DEL [dm6]	TT	T	3.487e^-4	0.89	INTRON CG4374
X	20936762	X_20936762_SNP [dm3] X_21065735_SNP [dm6]	G	A	3.488e^-4	0.89	INTRON bves & 1 other
3R	8744143	3R_8744143_SNP [dm3] 3R_12918421_SNP [dm6]	G	T	3.490e^-4	0.89	INTRON beat-Vb
X	10895007	X_10895007_SNP [dm3] X_11000974_SNP [dm6]	A	G	3.491e^-4	0.89	INTRON CG42339
2L	9445125	2L_9445125_SNP [dm3] 2L_9445125_SNP [dm6]	T	C	3.491e^-4	0.89	INTRON numb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10030942	X_10030942_SNP [dm3] X_10136909_SNP [dm6]	C	T	3.495e^-4	0.89	INTRON CR44894 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9463855	2L_9463855_SNP [dm3] 2L_9463855_SNP [dm6]	C	T	3.501e^-4	0.89	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_kn
3L	3016469	3L_3016469_SNP [dm3] 3L_3016469_SNP [dm6]	G	C	3.510e^-4	0.89	NON_SYNONYMOUS_CODING CG32487 UPSTREAM CG32488
3L	412168	3L_412168_SNP [dm3] 3L_412168_SNP [dm6]	G	A	3.525e^-4	0.89	INTERGENIC
2L	13211544	2L_13211544_SNP [dm3] 2L_13211544_SNP [dm6]	T	C	3.533e^-4	0.89	NON_SYNONYMOUS_CODING CG15482 DOWNSTREAM Pect & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18542565	2R_18542565_SNP [dm3] 2R_22655060_SNP [dm6]	G	A	3.533e^-4	0.89	SYNONYMOUS_CODING CG30196 UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7087058	3L_7087058_INS [dm3] 3L_7093958_INS [dm6]	A	AG	3.543e^-4	0.89	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12112716	2R_12112716_SNP [dm3] 2R_16225211_SNP [dm6]	A	G	3.543e^-4	0.89	UTR_5_PRIME CG15706
2L	3437649	2L_3437649_SNP [dm3] 2L_3437649_SNP [dm6]	A	T	3.543e^-4	0.89	INTERGENIC
2R	17933058	2R_17933058_SNP [dm3] 2R_22045553_SNP [dm6]	T	C	3.547e^-4	0.89	INTERGENIC
2L	9444160	2L_9444160_SNP [dm3] 2L_9444160_SNP [dm6]	T	A	3.550e^-4	0.89	INTRON numb
3R	26480660	3R_26480660_SNP [dm3] 3R_30654938_SNP [dm6]	C	T	3.550e^-4	0.89	INTERGENIC
3L	18262635	3L_18262635_SNP [dm3] 3L_18269535_SNP [dm6]	T	A	3.554e^-4	0.89	INTERGENIC
3L	3680552	3L_3680552_SNP [dm3] 3L_3680552_SNP [dm6]	C	T	3.558e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_cad
X	5827042	X_5827042_INS [dm3] X_5933009_INS [dm6]	A	AA	3.561e^-4	0.89	INTRON CG3726
3L	3699344	3L_3699344_SNP [dm3] 3L_3699344_SNP [dm6]	A	G	3.563e^-4	0.89	INTERGENIC
X	9441548	X_9441548_SNP [dm3] X_9547515_SNP [dm6]	T	G	3.565e^-4	0.89	INTRON CG32700
3R	9823760	3R_9823760_SNP [dm3] 3R_13998038_SNP [dm6]	T	C	3.576e^-4	0.89	INTRON rdx	TF binding site mE1_TFBS_HSA
3L	14313189	3L_14313189_SNP [dm3] 3L_14320089_SNP [dm6]	A	G	3.577e^-4	0.89	INTRON fz
X	2310890	X_2310890_SNP [dm3] X_2416857_SNP [dm6]	C	G	3.578e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	11320928	X_11320928_MNP [dm3] X_11426895_MNP [dm6]	GCGG	TTTT	3.591e^-4	0.89	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11320932	X_11320932_INS [dm3] X_11426899_INS [dm6]	A	AAT	3.591e^-4	0.89	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18739202	3R_18739202_SNP [dm3] 3R_22913480_SNP [dm6]	A	T	3.592e^-4	0.89	INTRON klg
X	2926636	X_2926636_SNP [dm3] X_3032603_SNP [dm6]	T	A	3.592e^-4	0.89	INTRON kirre
2R	16998506	2R_16998506_SNP [dm3] 2R_21111001_SNP [dm6]	A	G	3.592e^-4	0.89	INTRON ktub
2R	6606815	2R_6606815_SNP [dm3] 2R_10719310_SNP [dm6]	G	A	3.596e^-4	0.89	INTRON stan
2L	14043664	2L_14043664_SNP [dm3] 2L_14043664_SNP [dm6]	T	C	3.598e^-4	0.89	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19715501	2L_19715501_SNP [dm3] 2L_19715501_SNP [dm6]	C	T	3.603e^-4	0.89	INTRON Lar	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3L	45157	3L_45157_INS [dm3] 3L_45157_INS [dm6]	A	AC	3.605e^-4	0.89	INTERGENIC
2R	6017234	2R_6017234_SNP [dm3] 2R_10129729_SNP [dm6]	T	C	3.608e^-4	0.89	INTRON gem
2L	4596035	2L_4596035_SNP [dm3] 2L_4596035_SNP [dm6]	T	A	3.615e^-4	0.89	UPSTREAM dp INTRON dp	TF binding site mE1_TFBS_HSA
3L	11900692	3L_11900692_SNP [dm3] 3L_11907592_SNP [dm6]	T	G	3.617e^-4	0.89	INTRON CG44837
3R	22134371	3R_22134371_SNP [dm3] 3R_26308649_SNP [dm6]	G	A	3.625e^-4	0.89	INTERGENIC
2R	2453816	2R_2453816_SNP [dm3] 2R_6566311_SNP [dm6]	G	A	3.627e^-4	0.89	INTRON jing	TF binding site mE1_TFBS_chinmo
3L	13887805	3L_13887805_SNP [dm3] 3L_13894705_SNP [dm6]	C	T	3.631e^-4	0.89	INTRON dysc
X	4865876	X_4865876_DEL [dm3] X_4971843_DEL [dm6]	ATATATATATATATAT...	A	3.632e^-4	0.89	INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	16864024	2R_16864024_SNP [dm3] 2R_20976519_SNP [dm6]	A	C	3.634e^-4	0.89	UPSTREAM CG9344 INTRON CG34115	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	9735039	3L_9735039_SNP [dm3] 3L_9741939_SNP [dm6]	A	T	3.635e^-4	0.89	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6791093	2R_6791093_SNP [dm3] 2R_10903588_SNP [dm6]	C	T	3.636e^-4	0.89	START_GAINED CG12943 UTR_5_PRIME CG12943
3L	712385	3L_712385_DEL [dm3] 3L_712385_DEL [dm6]	TA	T	3.644e^-4	0.89	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	1570848	3L_1570848_DEL [dm3] 3L_1570848_DEL [dm6]	CCCTGTTTCCTC...	C	3.650e^-4	0.89	INTRON CG12004	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	12325195	2L_12325195_INS [dm3] 2L_12325195_INS [dm6]	A	ACGTAAAGCAAAATATTTTC...	3.650e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5122899	3L_5122899_SNP [dm3] 3L_5129799_SNP [dm6]	T	A	3.652e^-4	0.89	SYNONYMOUS_CODING CG4597
3L	17465333	3L_17465333_SNP [dm3] 3L_17472233_SNP [dm6]	T	A	3.655e^-4	0.89	INTRON CG7589
2R	10998487	2R_10998487_SNP [dm3] 2R_15110982_SNP [dm6]	T	C	3.669e^-4	0.89	INTERGENIC
3L	11606033	3L_11606033_SNP [dm3] 3L_11612933_SNP [dm6]	A	C	3.676e^-4	0.89	NON_SYNONYMOUS_CODING Muc68Ca
3R	18780272	3R_18780272_SNP [dm3] 3R_22954550_SNP [dm6]	A	G	3.677e^-4	0.89	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	14090881	X_14090881_SNP [dm3] X_14196848_SNP [dm6]	T	C	3.682e^-4	0.89	SYNONYMOUS_CODING yl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6100265	3L_6100265_SNP [dm3] 3L_6107165_SNP [dm6]	C	T	3.682e^-4	0.89	INTRON Ets65A	TF binding site mE1_TFBS_cad
X	12665890	X_12665890_SNP [dm3] X_12771857_SNP [dm6]	C	G	3.683e^-4	0.89	UTR_3_PRIME CG3812 & 1 other DOWNSTREAM CG3812
3L	5650459	3L_5650459_SNP [dm3] 3L_5657359_SNP [dm6]	C	G	3.685e^-4	0.89	UTR_3_PRIME lin-28 UPSTREAM sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	10630235	2L_10630235_SNP [dm3] 2L_10630235_SNP [dm6]	C	A	3.694e^-4	0.89	SYNONYMOUS_CODING CG7329	TF binding site mE1_TFBS_sens
3R	14030411	3R_14030411_SNP [dm3] 3R_18204689_SNP [dm6]	G	A	3.695e^-4	0.89	INTRON CG7985
2R	12389779	2R_12389779_SNP [dm3] 2R_16502274_SNP [dm6]	A	G	3.695e^-4	0.89	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	3022256	3L_3022256_SNP [dm3] 3L_3022256_SNP [dm6]	G	A	3.699e^-4	0.89	INTERGENIC
3L	12571201	3L_12571201_DEL [dm3] 3L_12578101_DEL [dm6]	AGAAATATTAGGAATAGGCT...	A	3.700e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7207197	2L_7207197_SNP [dm3] 2L_7207197_SNP [dm6]	A	G	3.710e^-4	0.89	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784	TF binding site mE1_TFBS_sens
2L	12415207	2L_12415207_SNP [dm3] 2L_12415207_SNP [dm6]	A	G	3.712e^-4	0.89	INTRON vir-1
X	11321022	X_11321022_SNP [dm3] X_11426989_SNP [dm6]	A	T	3.718e^-4	0.89	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4719151	3L_4719151_SNP [dm3] 3L_4719151_SNP [dm6]	C	A	3.720e^-4	0.89	INTRON RhoGEF64C
3R	2577503	3R_2577503_SNP [dm3] 3R_6751781_SNP [dm6]	T	A	3.721e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14376089	3L_14376089_SNP [dm3] 3L_14382989_SNP [dm6]	T	G	3.728e^-4	0.89	UTR_3_PRIME CG43120
3L	10279902	3L_10279902_SNP [dm3] 3L_10286802_SNP [dm6]	A	G	3.732e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	5457735	X_5457735_SNP [dm3] X_5563702_SNP [dm6]	C	A	3.735e^-4	0.89	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
3R	20316961	3R_20316961_SNP [dm3] 3R_24491239_SNP [dm6]	C	G	3.737e^-4	0.89	DOWNSTREAM nAChRalpha2 INTERGENIC
3L	11708590	3L_11708590_SNP [dm3] 3L_11715490_SNP [dm6]	G	A	3.742e^-4	0.89	UPSTREAM CG14132 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	13557062	2R_13557062_SNP [dm3] 2R_17669557_SNP [dm6]	T	G	3.750e^-4	0.89	SYNONYMOUS_CODING CG30108 UPSTREAM CG30109 DOWNSTREAM eIF3-S8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
X	20337729	X_20337729_SNP [dm3] X_20466702_SNP [dm6]	C	A	3.750e^-4	0.89	UTR_3_PRIME CG32506 UPSTREAM GstT3 DOWNSTREAM CG32506
2R	16143864	2R_16143864_SNP [dm3] 2R_20256359_SNP [dm6]	A	G	3.764e^-4	0.89	INTRON Ate1	TF binding site mE1_TFBS_cad
X	5440005	X_5440005_SNP [dm3] X_5545972_SNP [dm6]	G	A	3.772e^-4	0.89	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	21866518	2L_21866518_SNP [dm3] 2L_21866518_SNP [dm6]	A	G	3.785e^-4	0.89	UPSTREAM CR44917 & 1 other DOWNSTREAM CR44919 INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19024800	2R_19024800_SNP [dm3] 2R_23137277_SNP [dm6]	G	A	3.785e^-4	0.89	INTERGENIC
2L	15192354	2L_15192354_SNP [dm3] 2L_15192354_SNP [dm6]	C	T	3.805e^-4	0.89	INTRON CG4168
2R	15891156	2R_15891156_SNP [dm3] 2R_20003651_SNP [dm6]	T	C	3.816e^-4	0.89	UTR_3_PRIME CG16898
2L	9426788	2L_9426788_SNP [dm3] 2L_9426788_SNP [dm6]	C	T	3.818e^-4	0.89	UTR_5_PRIME Fbp2 UPSTREAM Fbp2 DOWNSTREAM Mco1
2L	402187	2L_402187_SNP [dm3] 2L_402187_SNP [dm6]	G	A	3.822e^-4	0.89	START_GAINED CG4213 UTR_5_PRIME CG4213 UPSTREAM CG4213	TF binding site mE1_TFBS_Trl
2R	10991461	2R_10991461_SNP [dm3] 2R_15103956_SNP [dm6]	C	G	3.827e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	11322522	2R_11322522_SNP [dm3] 2R_15435017_SNP [dm6]	C	A	3.828e^-4	0.89	INTRON CG43729	TF binding site mE1_TFBS_chinmo
3L	11276895	3L_11276895_SNP [dm3] 3L_11283795_SNP [dm6]	A	T	3.830e^-4	0.89	UPSTREAM CR45404 INTERGENIC
3R	24829701	3R_24829701_SNP [dm3] 3R_29003979_SNP [dm6]	C	G	3.838e^-4	0.89	INTRON wat
3R	25226172	3R_25226172_DEL [dm3] 3R_29400450_DEL [dm6]	ATTAAGTATCAA...	A	3.845e^-4	0.89	INTRON Ptp99A
2R	4956302	2R_4956302_SNP [dm3] 2R_9068797_SNP [dm6]	C	T	3.847e^-4	0.89	UPSTREAM ana INTRON ana
2L	16013909	2L_16013909_SNP [dm3] 2L_16013909_SNP [dm6]	T	A	3.849e^-4	0.89	INTRON beat-Ic
2L	1270489	2L_1270489_SNP [dm3] 2L_1270489_SNP [dm6]	G	A	3.859e^-4	0.89	INTRON robo3
2L	14849332	2L_14849332_DEL [dm3] 2L_14849332_DEL [dm6]	GCATTGCCCTTTAGATACTG...	G	3.863e^-4	0.89	UPSTREAM CG15279 INTRON CG15279
X	14842540	X_14842540_SNP [dm3] X_14948507_SNP [dm6]	T	C	3.865e^-4	0.89	INTRON pdgy	TF binding site mE1_TFBS_HSA
3L	14385307	3L_14385307_SNP [dm3] 3L_14392207_SNP [dm6]	A	G	3.872e^-4	0.89	INTERGENIC
X	8633305	X_8633305_SNP [dm3] X_8739272_SNP [dm6]	A	T	3.873e^-4	0.89	INTERGENIC
3L	3103931	3L_3103931_SNP [dm3] 3L_3103931_SNP [dm6]	T	C	3.878e^-4	0.89	INTRON Cht7
X	2689994	X_2689994_SNP [dm3] X_2795961_SNP [dm6]	G	A	3.879e^-4	0.89	INTRON kirre & 1 other	regulatory region REDfly_CRMs
X	2690011	X_2690011_SNP [dm3] X_2795978_SNP [dm6]	G	A	3.879e^-4	0.89	INTRON kirre & 1 other	regulatory region REDfly_CRMs
X	2690031	X_2690031_SNP [dm3] X_2795998_SNP [dm6]	A	G	3.879e^-4	0.89	INTRON kirre & 1 other	regulatory region REDfly_CRMs
2L	15306037	2L_15306037_SNP [dm3] 2L_15306037_SNP [dm6]	T	A	3.880e^-4	0.89	INTERGENIC
2R	3188996	2R_3188996_SNP [dm3] 2R_7301491_SNP [dm6]	T	A	3.881e^-4	0.89	DOWNSTREAM pwn INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18542610	2R_18542610_DEL [dm3] 2R_22655105_DEL [dm6]	GTATTGGGGCTC...	G	3.882e^-4	0.89	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other INTRON CG30196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	16163210	X_16163210_SNP [dm3] X_16269177_SNP [dm6]	G	A	3.895e^-4	0.89	SYNONYMOUS_CODING kat80
3L	1103300	3L_1103300_SNP [dm3] 3L_1103300_SNP [dm6]	T	G	3.897e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	3265646	2R_3265646_SNP [dm3] 2R_7378141_SNP [dm6]	G	C	3.899e^-4	0.89	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
3L	18202542	3L_18202542_SNP [dm3] 3L_18209442_SNP [dm6]	A	T	3.900e^-4	0.89	INTERGENIC
3R	25391719	3R_25391719_DEL [dm3] 3R_29565997_DEL [dm6]	GTGG	G	3.905e^-4	0.89	DOWNSTREAM Dr INTERGENIC
X	19871464	X_19871464_SNP [dm3] X_19977431_SNP [dm6]	A	G	3.915e^-4	0.89	INTERGENIC
X	11409478	X_11409478_SNP [dm3] X_11515445_SNP [dm6]	A	G	3.924e^-4	0.89	INTRON Drak	TF binding site mE1_TFBS_Kr
3R	5087199	3R_5087199_SNP [dm3] 3R_9261477_SNP [dm6]	A	G	3.926e^-4	0.89	INTRON VhaM8.9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16890805	3R_16890805_SNP [dm3] 3R_21065083_SNP [dm6]	A	C	3.927e^-4	0.89	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3R	15317387	3R_15317387_SNP [dm3] 3R_19491665_SNP [dm6]	A	T	3.936e^-4	0.89	UPSTREAM CG15025 INTRON Dys	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	12510094	2R_12510094_SNP [dm3] 2R_16622589_SNP [dm6]	C	T	3.940e^-4	0.89	INTRON CG5065	TF binding site mE1_TFBS_cad
3L	7938431	3L_7938431_SNP [dm3] 3L_7945331_SNP [dm6]	G	A	3.946e^-4	0.89	DOWNSTREAM CG43880 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8292927	X_8292927_SNP [dm3] X_8398894_SNP [dm6]	T	C	3.955e^-4	0.89	UPSTREAM CG10555 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18486575	2L_18486575_SNP [dm3] 2L_18486575_SNP [dm6]	C	T	3.962e^-4	0.89	INTRON CG10176	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13360539	3R_13360539_SNP [dm3] 3R_17534817_SNP [dm6]	G	A	3.963e^-4	0.89	UTR_5_PRIME P5cr-2 UPSTREAM P5cr-2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	5234040	2R_5234040_SNP [dm3] 2R_9346535_SNP [dm6]	T	C	3.968e^-4	0.89	INTRON CG13954 & 2 others	TF binding site mE1_TFBS_chinmo
3L	10293470	3L_10293470_SNP [dm3] 3L_10300370_SNP [dm6]	A	C	3.968e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	15154191	3R_15154191_SNP [dm3] 3R_19328469_SNP [dm6]	T	A	3.977e^-4	0.89	UPSTREAM CR44175 INTERGENIC
X	6643082	X_6643082_INS [dm3] X_6749049_INS [dm6]	A	AACAGAGA	3.980e^-4	0.89	INTRON CG14439
3R	4934321	3R_4934321_SNP [dm3] 3R_9108599_SNP [dm6]	G	A	3.985e^-4	0.89	INTRON pum
3L	10969436	3L_10969436_SNP [dm3] 3L_10976336_SNP [dm6]	A	T	3.992e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_cad
3L	10311674	3L_10311674_SNP [dm3] 3L_10318574_SNP [dm6]	A	T	3.996e^-4	0.89	INTERGENIC
2L	17385513	2L_17385513_SNP [dm3] 2L_17385513_SNP [dm6]	C	A	4.000e^-4	0.89	UPSTREAM CLIP-190 INTRON CLIP-190	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Ubx
2L	9446671	2L_9446671_SNP [dm3] 2L_9446671_SNP [dm6]	A	C	4.004e^-4	0.89	INTRON numb	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
3L	8711590	3L_8711590_SNP [dm3] 3L_8718490_SNP [dm6]	T	A	4.005e^-4	0.89	DOWNSTREAM SrpRbeta INTERGENIC
2L	2707543	2L_2707543_SNP [dm3] 2L_2707543_SNP [dm6]	C	A	4.009e^-4	0.89	INTRON CG31690
2L	11419352	2L_11419352_SNP [dm3] 2L_11419352_SNP [dm6]	A	G	4.015e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11964279	2R_11964279_SNP [dm3] 2R_16076774_SNP [dm6]	T	C	4.016e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25799111	3R_25799111_SNP [dm3] 3R_29973389_SNP [dm6]	G	A	4.021e^-4	0.89	INTERGENIC
2R	8607984	2R_8607984_SNP [dm3] 2R_12720479_SNP [dm6]	T	G	4.022e^-4	0.89	INTRON CG42663
3R	2860427	3R_2860427_SNP [dm3] 3R_7034705_SNP [dm6]	C	T	4.028e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7894419	3L_7894419_SNP [dm3] 3L_7901319_SNP [dm6]	T	C	4.052e^-4	0.89	SYNONYMOUS_CODING pbl INTRON pbl
3R	15325922	3R_15325922_INS [dm3] 3R_19500200_INS [dm6]	A	AGATTCTTCTTAAA...	4.055e^-4	0.89	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25125888	3R_25125888_SNP [dm3] 3R_29300166_SNP [dm6]	C	A	4.056e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	1408391	3L_1408391_SNP [dm3] 3L_1408391_SNP [dm6]	T	C	4.056e^-4	0.89	INTRON Ptp61F
3R	15312083	3R_15312083_SNP [dm3] 3R_19486361_SNP [dm6]	C	A	4.066e^-4	0.89	UPSTREAM Dys INTRON Dys
X	5055388	X_5055388_SNP [dm3] X_5161355_SNP [dm6]	C	A	4.067e^-4	0.89	INTRON rg & 1 other
2R	3078696	2R_3078696_SNP [dm3] 2R_7191191_SNP [dm6]	C	T	4.078e^-4	0.89	INTRON pk	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3L	7721688	3L_7721688_SNP [dm3] 3L_7728588_SNP [dm6]	A	G	4.083e^-4	0.89	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
2R	18542253	2R_18542253_SNP [dm3] 2R_22654748_SNP [dm6]	A	T	4.091e^-4	0.89	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG30196 & 2 others INTERGENIC	TF binding site mE1_TFBS_cad
2L	17322894	2L_17322894_SNP [dm3] 2L_17322894_SNP [dm6]	A	C	4.092e^-4	0.89	INTERGENIC
2L	5557577	2L_5557577_SNP [dm3] 2L_5557577_SNP [dm6]	A	T	4.099e^-4	0.89	SPLICE_SITE_REGION GluRIIA INTRON GluRIIA
X	15135061	X_15135061_SNP [dm3] X_15241028_SNP [dm6]	G	C	4.102e^-4	0.89	INTERGENIC
3L	1163795	3L_1163795_SNP [dm3] 3L_1163795_SNP [dm6]	C	A	4.106e^-4	0.89	INTRON bab2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cnc
3L	712348	3L_712348_SNP [dm3] 3L_712348_SNP [dm6]	G	T	4.111e^-4	0.89	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	14816252	3L_14816252_SNP [dm3] 3L_14823152_SNP [dm6]	A	G	4.112e^-4	0.89	INTRON CG17839
2R	16865527	2R_16865527_SNP [dm3] 2R_20978022_SNP [dm6]	C	T	4.135e^-4	0.89	SYNONYMOUS_CODING CG15650 UPSTREAM CG9313 DOWNSTREAM CG9344
2R	11530595	2R_11530595_SNP [dm3] 2R_15643090_SNP [dm6]	T	A	4.149e^-4	0.89	INTRON CG42524
3R	18914587	3R_18914587_SNP [dm3] 3R_23088865_SNP [dm6]	T	C	4.167e^-4	0.89	INTRON CG13830	TF binding site mE1_TFBS_cad
2R	11671705	2R_11671705_SNP [dm3] 2R_15784200_SNP [dm6]	G	T	4.168e^-4	0.89	INTRON Zasp52	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5888622	3L_5888622_SNP [dm3] 3L_5895522_SNP [dm6]	G	T	4.169e^-4	0.89	DOWNSTREAM Pole2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11330331	2R_11330331_SNP [dm3] 2R_15442826_SNP [dm6]	A	G	4.176e^-4	0.89	INTRON CG43729
3L	18112916	3L_18112916_SNP [dm3] 3L_18119816_SNP [dm6]	A	C	4.184e^-4	0.89	UTR_5_PRIME CG7341 DOWNSTREAM CG32195	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1163793	3L_1163793_SNP [dm3] 3L_1163793_SNP [dm6]	T	C	4.185e^-4	0.89	INTRON bab2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cnc
X	3136990	X_3136990_SNP [dm3] X_3242957_SNP [dm6]	A	G	4.185e^-4	0.89	UPSTREAM ng3 DOWNSTREAM ng1 & 1 other INTRON dnc
3L	3966428	3L_3966428_SNP [dm3] 3L_3966428_SNP [dm6]	C	A	4.188e^-4	0.89	INTERGENIC
2L	414406	2L_414406_SNP [dm3] 2L_414406_SNP [dm6]	T	A	4.196e^-4	0.89	UPSTREAM ebi INTRON AP-2alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	19715538	2L_19715538_SNP [dm3] 2L_19715538_SNP [dm6]	T	A	4.205e^-4	0.89	INTRON Lar	TF binding site BDTNP1_TFBS_sna
3R	5087274	3R_5087274_SNP [dm3] 3R_9261552_SNP [dm6]	C	A	4.209e^-4	0.89	INTRON VhaM8.9	TF binding site mE1_TFBS_HSA
3L	14817336	3L_14817336_SNP [dm3] 3L_14824236_SNP [dm6]	G	A	4.210e^-4	0.89	INTRON CG17839
2L	16619032	2L_16619032_SNP [dm3] 2L_16619032_SNP [dm6]	A	C	4.212e^-4	0.89	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	4304547	3R_4304547_SNP [dm3] 3R_8478825_SNP [dm6]	A	G	4.218e^-4	0.89	INTERGENIC
X	20267857	X_20267857_SNP [dm3] X_20396830_SNP [dm6]	C	T	4.234e^-4	0.89	INTRON HERC2	TF binding site BDTNP1_TFBS_da
2L	9485629	2L_9485629_SNP [dm3] 2L_9485629_SNP [dm6]	G	A	4.236e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	19061699	3R_19061699_SNP [dm3] 3R_23235977_SNP [dm6]	T	C	4.240e^-4	0.89	INTRON CG4467
2R	3072957	2R_3072957_SNP [dm3] 2R_7185452_SNP [dm6]	C	T	4.248e^-4	0.89	DOWNSTREAM CG30384 INTRON pk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14389469	3L_14389469_SNP [dm3] 3L_14396369_SNP [dm6]	C	G	4.251e^-4	0.89	INTERGENIC
2R	8933808	2R_8933808_SNP [dm3] 2R_13046303_SNP [dm6]	C	G	4.254e^-4	0.89	UTR_3_PRIME CG13323 DOWNSTREAM CG13323
3R	13361005	3R_13361005_SNP [dm3] 3R_17535283_SNP [dm6]	G	A	4.265e^-4	0.89	UPSTREAM CG5823 & 1 other INTRON P5cr-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_ttk
3L	4842259	3L_4842259_SNP [dm3] 3L_4842259_SNP [dm6]	T	C	4.269e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	19836530	2L_19836530_SNP [dm3] 2L_19836530_SNP [dm6]	A	G	4.273e^-4	0.89	INTRON sick	TF binding site mE1_TFBS_cad
2L	17315237	2L_17315237_SNP [dm3] 2L_17315237_SNP [dm6]	A	T	4.274e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13272954	3L_13272954_SNP [dm3] 3L_13279854_SNP [dm6]	A	T	4.274e^-4	0.89	DOWNSTREAM caps & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	10998554	2R_10998554_INS [dm3] 2R_15111049_INS [dm6]	A	ACCATAAGAACCACTAATGG...	4.283e^-4	0.89	INTERGENIC
3R	12642507	3R_12642507_SNP [dm3] 3R_16816785_SNP [dm6]	T	C	4.283e^-4	0.89	INTRON abd-A	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11872585	2R_11872585_SNP [dm3] 2R_15985080_SNP [dm6]	A	G	4.287e^-4	0.89	SYNONYMOUS_CODING Strn-Mlck
3R	17347034	3R_17347034_SNP [dm3] 3R_21521312_SNP [dm6]	G	T	4.290e^-4	0.89	INTRON CG7956	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	8042792	X_8042792_SNP [dm3] X_8148759_SNP [dm6]	G	A	4.300e^-4	0.89	UPSTREAM CG10959 DOWNSTREAM CG2129 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	10893847	2L_10893847_SNP [dm3] 2L_10893847_SNP [dm6]	A	T	4.308e^-4	0.89	DOWNSTREAM CR44491 INTERGENIC
X	16791327	X_16791327_SNP [dm3] X_16897294_SNP [dm6]	A	T	4.309e^-4	0.89	UPSTREAM CG33252 INTERGENIC
2R	16868926	2R_16868926_SNP [dm3] 2R_20981421_SNP [dm6]	T	C	4.309e^-4	0.89	SYNONYMOUS_CODING CG9313	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17749543	3R_17749543_SNP [dm3] 3R_21923821_SNP [dm6]	T	C	4.321e^-4	0.89	INTERGENIC
2R	5838941	2R_5838941_SNP [dm3] 2R_9951436_SNP [dm6]	G	T	4.323e^-4	0.89	INTRON Mef2
2L	16504341	2L_16504341_SNP [dm3] 2L_16504341_SNP [dm6]	A	G	4.333e^-4	0.89	INTRON Tpr2
3R	25806119	3R_25806119_SNP [dm3] 3R_29980397_SNP [dm6]	C	T	4.339e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_HSA
X	9497043	X_9497043_SNP [dm3] X_9603010_SNP [dm6]	G	A	4.341e^-4	0.89	SYNONYMOUS_CODING Gga	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2643105	3L_2643105_DEL [dm3] 3L_2643105_DEL [dm6]	TAATAT	T	4.364e^-4	0.89	INTRON CG14949
3L	20924804	3L_20924804_SNP [dm3] 3L_20931704_SNP [dm6]	T	C	4.373e^-4	0.89	INTRON fng	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21879086	2L_21879086_SNP [dm3] 2L_21879086_SNP [dm6]	C	G	4.376e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4932590	3R_4932590_SNP [dm3] 3R_9106868_SNP [dm6]	C	T	4.385e^-4	0.89	INTRON pum
2R	13557740	2R_13557740_SNP [dm3] 2R_17670235_SNP [dm6]	C	T	4.392e^-4	0.89	SYNONYMOUS_CODING CG30109 UPSTREAM CR44404 DOWNSTREAM eIF3-S8 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14154449	X_14154449_SNP [dm3] X_14260416_SNP [dm6]	G	T	4.394e^-4	0.89	UPSTREAM CG1461 INTERGENIC
X	11321111	X_11321111_SNP [dm3] X_11427078_SNP [dm6]	C	G	4.396e^-4	0.89	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12438741	3L_12438741_SNP [dm3] 3L_12445641_SNP [dm6]	T	C	4.397e^-4	0.89	INTERGENIC
3L	10829004	3L_10829004_SNP [dm3] 3L_10835904_SNP [dm6]	C	T	4.399e^-4	0.89	INTERGENIC
3L	8547757	3L_8547757_SNP [dm3] 3L_8554657_SNP [dm6]	A	T	4.404e^-4	0.89	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9131294	2R_9131294_SNP [dm3] 2R_13243789_SNP [dm6]	A	C	4.405e^-4	0.89	DOWNSTREAM CR45278 INTERGENIC
3R	15131423	3R_15131423_SNP [dm3] 3R_19305701_SNP [dm6]	G	A	4.413e^-4	0.89	SYNONYMOUS_CODING Dl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	7303874	3L_7303874_SNP [dm3] 3L_7310774_SNP [dm6]	A	C	4.416e^-4	0.89	INTRON unc-13-4A
3L	9491503	3L_9491503_SNP [dm3] 3L_9498403_SNP [dm6]	T	C	4.418e^-4	0.89	INTRON path
3R	15325848	3R_15325848_SNP [dm3] 3R_19500126_SNP [dm6]	C	T	4.420e^-4	0.89	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15191725	3L_15191725_SNP [dm3] 3L_15198625_SNP [dm6]	T	C	4.424e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_cad
3L	8745109	3L_8745109_SNP [dm3] 3L_8752009_SNP [dm6]	A	G	4.424e^-4	0.89	UPSTREAM CR44527 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7257545	3L_7257545_SNP [dm3] 3L_7264445_SNP [dm6]	T	A	4.427e^-4	0.89	UPSTREAM CG14830 INTERGENIC
3L	21602306	3L_21602306_SNP [dm3] 3L_21609206_SNP [dm6]	A	C	4.435e^-4	0.89	INTRON TfAP-2
3L	11843819	3L_11843819_SNP [dm3] 3L_11850719_SNP [dm6]	A	C	4.439e^-4	0.89	UTR_3_PRIME CG44837
3R	13948880	3R_13948880_SNP [dm3] 3R_18123158_SNP [dm6]	T	C	4.445e^-4	0.89	INTRON sr	TF binding site mE1_TFBS_inv
3R	14850563	3R_14850563_SNP [dm3] 3R_19024841_SNP [dm6]	T	A	4.446e^-4	0.89	UTR_3_PRIME CG14286 UPSTREAM CG6005 & 1 other
3L	14817116	3L_14817116_SNP [dm3] 3L_14824016_SNP [dm6]	A	T	4.451e^-4	0.89	INTRON CG17839
2L	13458246	2L_13458246_SNP [dm3] 2L_13458246_SNP [dm6]	A	T	4.452e^-4	0.89	DOWNSTREAM CR45684 & 1 other INTRON CG42784
2R	14077068	2R_14077068_SNP [dm3] 2R_18189563_SNP [dm6]	G	A	4.453e^-4	0.89	UTR_3_PRIME CG14500 INTRON CG33958
2R	2939347	2R_2939347_SNP [dm3] 2R_7051842_SNP [dm6]	G	A	4.455e^-4	0.89	UTR_3_PRIME lbm UPSTREAM Tsp42En
2R	11340575	2R_11340575_DEL [dm3] 2R_15453070_DEL [dm6]	CC	C	4.463e^-4	0.89	INTRON CG43729
2R	20191493	2R_20191493_SNP [dm3] 2R_24303970_SNP [dm6]	G	A	4.465e^-4	0.89	INTERGENIC	regulatory region REDfly_CRMs
2L	4317869	2L_4317869_SNP [dm3] 2L_4317869_SNP [dm6]	A	T	4.469e^-4	0.89	INTRON tutl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10694245	3L_10694245_SNP [dm3] 3L_10701145_SNP [dm6]	G	A	4.469e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4950263	3L_4950263_SNP [dm3] 3L_4950263_SNP [dm6]	C	T	4.470e^-4	0.89	INTRON Con	TF binding site mE1_TFBS_chinmo
2L	10082295	2L_10082295_SNP [dm3] 2L_10082295_SNP [dm6]	C	T	4.473e^-4	0.89	INTRON CG44153	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21458725	X_21458725_SNP [dm3] X_21587698_SNP [dm6]	T	C	4.491e^-4	0.89	INTERGENIC
X	16222227	X_16222227_SNP [dm3] X_16328194_SNP [dm6]	C	T	4.495e^-4	0.89	UTR_3_PRIME CalpC DOWNSTREAM CG9919
3L	5892565	3L_5892565_SNP [dm3] 3L_5899465_SNP [dm6]	C	T	4.496e^-4	0.89	UPSTREAM CG32409 DOWNSTREAM CG5592 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	19480177	2L_19480177_SNP [dm3] 2L_19480177_SNP [dm6]	A	G	4.505e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	22020494	2L_22020494_SNP [dm3] 2L_22020494_SNP [dm6]	A	G	4.508e^-4	0.89	DOWNSTREAM CR33987 INTRON tio	TF binding site mE1_TFBS_Trl
2R	12514940	2R_12514940_SNP [dm3] 2R_16627435_SNP [dm6]	G	T	4.511e^-4	0.89	UTR_3_PRIME Alk
2L	6508912	2L_6508912_SNP [dm3] 2L_6508912_SNP [dm6]	T	A	4.514e^-4	0.89	UPSTREAM CR44775 INTRON CG31637	TF binding site BDTNP1_TFBS_hb
2R	9147036	2R_9147036_SNP [dm3] 2R_13259531_SNP [dm6]	A	T	4.517e^-4	0.89	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3L	8582894	3L_8582894_SNP [dm3] 3L_8589794_SNP [dm6]	G	C	4.524e^-4	0.89	UPSTREAM CG43078 INTRON CG43078
3L	17672226	3L_17672226_SNP [dm3] 3L_17679126_SNP [dm6]	C	A	4.525e^-4	0.89	INTRON CG34251
2L	17861786	2L_17861786_SNP [dm3] 2L_17861786_SNP [dm6]	A	C	4.526e^-4	0.89	INTRON CadN2
2R	16862751	2R_16862751_SNP [dm3] 2R_20975246_SNP [dm6]	T	C	4.530e^-4	0.89	UPSTREAM CG34115 INTERGENIC
3L	11168316	3L_11168316_SNP [dm3] 3L_11175216_SNP [dm6]	G	C	4.536e^-4	0.89	INTRON CG14142
3L	14797648	3L_14797648_SNP [dm3] 3L_14804548_SNP [dm6]	C	T	4.539e^-4	0.89	UPSTREAM CG17839 INTERGENIC
3R	16889790	3R_16889790_SNP [dm3] 3R_21064068_SNP [dm6]	T	G	4.540e^-4	0.89	UTR_5_PRIME Cortactin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	15135576	X_15135576_SNP [dm3] X_15241543_SNP [dm6]	T	G	4.549e^-4	0.89	INTERGENIC
3L	13990762	3L_13990762_SNP [dm3] 3L_13997662_SNP [dm6]	G	A	4.550e^-4	0.89	NON_SYNONYMOUS_CODING CG17361 DOWNSTREAM CG17359	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10694223	3L_10694223_SNP [dm3] 3L_10701123_SNP [dm6]	C	A	4.561e^-4	0.89	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12050383	2R_12050383_SNP [dm3] 2R_16162878_SNP [dm6]	C	T	4.565e^-4	0.89	INTRON lbk
3R	22518295	3R_22518295_SNP [dm3] 3R_26692573_SNP [dm6]	G	C	4.571e^-4	0.89	UTR_3_PRIME TwdlQ	TF binding site mE1_TFBS_cad
3L	3095893	3L_3095893_SNP [dm3] 3L_3095893_SNP [dm6]	G	A	4.574e^-4	0.89	UPSTREAM tRNA:CR32289 & 2 others DOWNSTREAM tRNA:CR32288 & 1 other INTRON Cht7	TF binding site BDTNP1_TFBS_dl
2R	15838900	2R_15838900_SNP [dm3] 2R_19951395_SNP [dm6]	C	T	4.574e^-4	0.89	UTR_5_PRIME CG10822
3L	7141068	3L_7141068_SNP [dm3] 3L_7147968_SNP [dm6]	A	T	4.574e^-4	0.89	INTRON corn	TF binding site mE1_TFBS_cad
X	6477066	X_6477066_SNP [dm3] X_6583033_SNP [dm6]	A	G	4.574e^-4	0.89	SYNONYMOUS_CODING CG34417 INTRON CG34417
2R	13555652	2R_13555652_SNP [dm3] 2R_17668147_SNP [dm6]	C	A	4.576e^-4	0.89	SYNONYMOUS_CODING eIF3-S8	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18758721	3R_18758721_SNP [dm3] 3R_22932999_SNP [dm6]	G	A	4.576e^-4	0.89	INTRON klg
2R	3546744	2R_3546744_SNP [dm3] 2R_7659239_SNP [dm6]	G	A	4.582e^-4	0.89	DOWNSTREAM CG1339 & 1 other INTERGENIC
3L	9557212	3L_9557212_SNP [dm3] 3L_9564112_SNP [dm6]	A	T	4.593e^-4	0.89	INTRON CG42673
3R	18478605	3R_18478605_SNP [dm3] 3R_22652883_SNP [dm6]	T	A	4.620e^-4	0.89	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	357751	2L_357751_SNP [dm3] 2L_357751_SNP [dm6]	G	C	4.627e^-4	0.89	SPLICE_SITE_REGION Ent1 UTR_5_PRIME Ent1 DOWNSTREAM CR45367 INTRON Ent1 EXON CR45366	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	17456726	3L_17456726_SNP [dm3] 3L_17463626_SNP [dm6]	A	G	4.630e^-4	0.89	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	8452798	2R_8452798_SNP [dm3] 2R_12565293_SNP [dm6]	C	A	4.632e^-4	0.89	UPSTREAM CG33775 & 1 other INTERGENIC
2R	13739728	2R_13739728_SNP [dm3] 2R_17852223_SNP [dm6]	T	C	4.642e^-4	0.89	INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	4036793	2L_4036793_SNP [dm3] 2L_4036793_SNP [dm6]	A	T	4.642e^-4	0.89	INTRON ed
2R	19533244	2R_19533244_SNP [dm3] 2R_23645721_SNP [dm6]	G	A	4.648e^-4	0.89	UPSTREAM retn INTRON retn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	23480670	3R_23480670_SNP [dm3] 3R_27654948_SNP [dm6]	G	T	4.657e^-4	0.89	INTRON tau
X	8156039	X_8156039_SNP [dm3] X_8262006_SNP [dm6]	A	T	4.659e^-4	0.89	INTRON CG1632
3L	4616042	3L_4616042_SNP [dm3] 3L_4616042_SNP [dm6]	G	C	4.666e^-4	0.89	INTRON Src64B
2L	1310440	2L_1310440_SNP [dm3] 2L_1310440_SNP [dm6]	G	T	4.677e^-4	0.89	INTERGENIC
3R	15154149	3R_15154149_SNP [dm3] 3R_19328427_SNP [dm6]	A	T	4.683e^-4	0.89	UPSTREAM CR44175 INTERGENIC
2L	7041785	2L_7041785_DEL [dm3] 2L_7041785_DEL [dm6]	GTCG	A	4.690e^-4	0.89	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14850551	3R_14850551_SNP [dm3] 3R_19024829_SNP [dm6]	C	T	4.694e^-4	0.89	UTR_3_PRIME CG14286 UPSTREAM CG6005 & 1 other
3L	18654314	3L_18654314_INS [dm3] 3L_18661214_INS [dm6]	C	CCC	4.696e^-4	0.89	INTRON MYPT-75D
X	12860962	X_12860962_SNP [dm3] X_12966929_SNP [dm6]	T	A	4.700e^-4	0.89	UPSTREAM Mur11Da INTERGENIC
2R	11335948	2R_11335948_SNP [dm3] 2R_15448443_SNP [dm6]	C	T	4.705e^-4	0.89	INTRON CG43729
3R	20225930	3R_20225930_SNP [dm3] 3R_24400208_SNP [dm6]	C	G	4.713e^-4	0.89	UTR_3_PRIME nAChRalpha1 DOWNSTREAM nAChRalpha1
3L	16823020	3L_16823020_DEL [dm3] 3L_16829920_DEL [dm6]	TGCAGTTTTGCAAT...	T	4.713e^-4	0.89	UPSTREAM CG13024 INTERGENIC
X	7623661	X_7623661_SNP [dm3] X_7729628_SNP [dm6]	G	T	4.715e^-4	0.89	INTRON CG12155	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	17503877	X_17503877_SNP [dm3] X_17609844_SNP [dm6]	G	T	4.718e^-4	0.89	INTERGENIC
X	6643040	X_6643040_SNP [dm3] X_6749007_SNP [dm6]	A	T	4.722e^-4	0.89	UPSTREAM CR44964 INTRON CG14439
3L	712376	3L_712376_SNP [dm3] 3L_712376_SNP [dm6]	G	A	4.725e^-4	0.89	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	16170031	2L_16170031_SNP [dm3] 2L_16170031_SNP [dm6]	C	T	4.741e^-4	0.89	INTRON Ca-alpha1D
2L	1482138	2L_1482138_SNP [dm3] 2L_1482138_SNP [dm6]	T	A	4.742e^-4	0.89	INTERGENIC
2L	7209233	2L_7209233_SNP [dm3] 2L_7209233_SNP [dm6]	T	G	4.744e^-4	0.89	INTRON CG13784
X	10534108	X_10534108_SNP [dm3] X_10640075_SNP [dm6]	A	G	4.754e^-4	0.89	INTRON X11Lbeta
3R	20347647	3R_20347647_SNP [dm3] 3R_24521925_SNP [dm6]	T	C	4.771e^-4	0.89	UTR_3_PRIME Pp1alpha-96A DOWNSTREAM Pp1alpha-96A & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13274963	3L_13274963_SNP [dm3] 3L_13281863_SNP [dm6]	T	C	4.775e^-4	0.89	UPSTREAM CR43146 INTERGENIC
2R	3255635	2R_3255635_SNP [dm3] 2R_7368130_SNP [dm6]	A	G	4.800e^-4	0.89	INTRON Dscam1
3L	16054844	3L_16054844_SNP [dm3] 3L_16061744_SNP [dm6]	C	G	4.807e^-4	0.89	INTRON Mbs
3L	21602857	3L_21602857_SNP [dm3] 3L_21609757_SNP [dm6]	T	C	4.808e^-4	0.89	SYNONYMOUS_CODING TfAP-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	12321698	2R_12321698_SNP [dm3] 2R_16434193_SNP [dm6]	A	G	4.812e^-4	0.89	SYNONYMOUS_CODING CG7848	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19871594	X_19871594_INS [dm3] X_19977561_INS [dm6]	A	AC	4.816e^-4	0.89	INTERGENIC
3R	26476642	3R_26476642_SNP [dm3] 3R_30650920_SNP [dm6]	C	T	4.837e^-4	0.89	DOWNSTREAM CG34433 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1922773	2L_1922773_SNP [dm3] 2L_1922773_SNP [dm6]	G	A	4.840e^-4	0.89	INTRON CG7337
2R	20340340	2R_20340340_SNP [dm3] 2R_24452817_SNP [dm6]	T	C	4.840e^-4	0.89	INTRON CG4563	TF binding site mE1_TFBS_chinmo
X	893194	X_893194_SNP [dm3] X_999161_SNP [dm6]	A	T	4.840e^-4	0.89	INTERGENIC
2R	15267497	2R_15267497_SNP [dm3] 2R_19379992_SNP [dm6]	G	A	4.847e^-4	0.89	SYNONYMOUS_CODING CG10062 UPSTREAM CG10073
3L	7887500	3L_7887500_SNP [dm3] 3L_7894400_SNP [dm6]	C	T	4.855e^-4	0.89	NON_SYNONYMOUS_CODING CG32365 UPSTREAM eIF4E-5	TF binding site mE1_TFBS_cad
3L	7141071	3L_7141071_SNP [dm3] 3L_7147971_SNP [dm6]	A	T	4.859e^-4	0.89	INTRON corn	TF binding site mE1_TFBS_cad
2R	8137710	2R_8137710_SNP [dm3] 2R_12250205_SNP [dm6]	C	A	4.864e^-4	0.89	INTERGENIC
X	11945085	X_11945085_SNP [dm3] X_12051052_SNP [dm6]	A	T	4.864e^-4	0.89	INTRON CR43960 & 1 other
3L	19429697	3L_19429697_SNP [dm3] 3L_19436597_SNP [dm6]	C	G	4.866e^-4	0.89	INTERGENIC
3L	712384	3L_712384_SNP [dm3] 3L_712384_SNP [dm6]	T	C	4.867e^-4	0.89	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	15838903	2R_15838903_SNP [dm3] 2R_19951398_SNP [dm6]	A	C	4.869e^-4	0.89	UTR_5_PRIME CG10822
2R	17994804	2R_17994804_SNP [dm3] 2R_22107299_SNP [dm6]	A	G	4.870e^-4	0.89	DOWNSTREAM Vrp1 INTRON Vrp1
2R	1694463	2R_1694463_INS [dm3] 2R_5806958_INS [dm6]	A	AGCTCCGAGCTCA...	4.871e^-4	0.89	INTRON dpr12	TF binding site BDTNP1_TFBS_prd
3R	20565182	3R_20565182_SNP [dm3] 3R_24739460_SNP [dm6]	T	G	4.874e^-4	0.89	INTRON tok
3R	10575129	3R_10575129_SNP [dm3] 3R_14749407_SNP [dm6]	C	G	4.876e^-4	0.89	UPSTREAM jvl & 1 other INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	21917509	2L_21917509_SNP [dm3] 2L_21917509_SNP [dm6]	G	T	4.888e^-4	0.89	DOWNSTREAM CG11634 INTRON CG11634
X	3375029	X_3375029_SNP [dm3] X_3480996_SNP [dm6]	G	A	4.889e^-4	0.89	UTR_5_PRIME CG10804 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl
X	3375057	X_3375057_SNP [dm3] X_3481024_SNP [dm6]	A	G	4.889e^-4	0.89	UTR_5_PRIME CG10804 INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	15906348	2R_15906348_SNP [dm3] 2R_20018843_SNP [dm6]	G	A	4.921e^-4	0.89	INTERGENIC
X	3377018	X_3377018_SNP [dm3] X_3482985_SNP [dm6]	C	A	4.922e^-4	0.89	UTR_5_PRIME CG10802 UPSTREAM CG10804 INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	3547796	3L_3547796_SNP [dm3] 3L_3547796_SNP [dm6]	T	A	4.931e^-4	0.89	INTRON Eip63E
X	18730960	X_18730960_SNP [dm3] X_18836927_SNP [dm6]	A	T	4.941e^-4	0.89	INTRON Pvf1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5234047	2R_5234047_SNP [dm3] 2R_9346542_SNP [dm6]	G	C	4.943e^-4	0.89	INTRON CG13954 & 2 others	TF binding site mE1_TFBS_chinmo
3L	10264888	3L_10264888_SNP [dm3] 3L_10271788_SNP [dm6]	C	A	4.953e^-4	0.89	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13310271	3L_13310271_SNP [dm3] 3L_13317171_SNP [dm6]	C	T	4.957e^-4	0.89	INTERGENIC
X	8292944	X_8292944_SNP [dm3] X_8398911_SNP [dm6]	G	C	4.973e^-4	0.89	UPSTREAM CG10555 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9840029	3R_9840029_SNP [dm3] 3R_14014307_SNP [dm6]	A	T	4.976e^-4	0.89	INTRON rdx	TF binding site BDTNP1_TFBS_dl
3R	13279793	3R_13279793_SNP [dm3] 3R_17454071_SNP [dm6]	T	G	4.998e^-4	0.89	INTERGENIC
3R	18909753	3R_18909753_SNP [dm3] 3R_23084031_SNP [dm6]	G	A	5.000e^-4	0.89	INTRON CG13830	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13964497	3L_13964497_SNP [dm3] 3L_13971397_SNP [dm6]	C	T	5.002e^-4	0.89	INTRON ssp2 & 1 other

By genomic position
Variant impact
Gene name

Wing_CentroidSize phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results