DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.826e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.02068
In_3R_K	0.08074
In_3R_Mo	0.04188

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	6.2014	0.045
In_3R_Mo	7.6977	0.0213

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2722 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	4737896	3L_4737896_SNP [dm3] 3L_4737896_SNP [dm6]	G	A	6.356e^-7	0.451	INTRON RhoGEF64C
3L	4737895	3L_4737895_SNP [dm3] 3L_4737895_SNP [dm6]	A	G	7.636e^-7	0.451	INTRON RhoGEF64C
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	8.647e^-7	0.451	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14695058	2L_14695058_SNP [dm3] 2L_14695058_SNP [dm6]	G	A	1.182e^-6	0.451	INTERGENIC
3L	4647084	3L_4647084_INS [dm3] 3L_4647084_INS [dm6]	T	TC	1.341e^-6	0.451	INTRON axo
3L	712399	3L_712399_SNP [dm3] 3L_712399_SNP [dm6]	A	T	1.857e^-6	0.451	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	4094020	X_4094020_SNP [dm3] X_4199987_SNP [dm6]	T	C	2.140e^-6	0.451	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	712385	3L_712385_DEL [dm3] 3L_712385_DEL [dm6]	TA	T	2.162e^-6	0.451	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712376	3L_712376_SNP [dm3] 3L_712376_SNP [dm6]	G	A	2.466e^-6	0.451	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	711790	3L_711790_SNP [dm3] 3L_711790_SNP [dm6]	A	T	2.943e^-6	0.451	UTR_5_PRIME CG13896	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	24412989	3R_24412989_SNP [dm3] 3R_28587267_SNP [dm6]	T	C	3.066e^-6	0.451	EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	19841437	2L_19841437_SNP [dm3] 2L_19841437_SNP [dm6]	G	A	3.275e^-6	0.451	INTRON sick
3L	712388	3L_712388_DEL [dm3] 3L_712388_DEL [dm6]	AAT	A	3.314e^-6	0.451	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712384	3L_712384_SNP [dm3] 3L_712384_SNP [dm6]	T	C	3.370e^-6	0.451	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	25570656	3R_25570656_SNP [dm3] 3R_29744934_SNP [dm6]	G	A	4.394e^-6	0.479	SYNONYMOUS_CODING CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14694914	2L_14694914_SNP [dm3] 2L_14694914_SNP [dm6]	C	T	4.679e^-6	0.479	INTERGENIC
3L	712235	3L_712235_SNP [dm3] 3L_712235_SNP [dm6]	C	T	5.313e^-6	0.479	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	712423	3L_712423_SNP [dm3] 3L_712423_SNP [dm6]	G	C	5.521e^-6	0.479	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	19808957	2L_19808957_SNP [dm3] 2L_19808957_SNP [dm6]	T	A	5.526e^-6	0.479	INTRON sick	TF binding site mE1_TFBS_cad
3L	712348	3L_712348_SNP [dm3] 3L_712348_SNP [dm6]	G	T	5.563e^-6	0.479	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	21160839	X_21160839_SNP [dm3] X_21289812_SNP [dm6]	T	C	5.742e^-6	0.479	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	712377	3L_712377_SNP [dm3] 3L_712377_SNP [dm6]	A	C	6.197e^-6	0.479	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	24485802	3R_24485802_SNP [dm3] 3R_28660080_SNP [dm6]	A	G	6.502e^-6	0.479	INTERGENIC
3L	13487564	3L_13487564_SNP [dm3] 3L_13494464_SNP [dm6]	G	T	6.530e^-6	0.479	INTRON Tgi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	24413164	3R_24413164_SNP [dm3] 3R_28587442_SNP [dm6]	C	T	7.186e^-6	0.479	EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	13570329	3R_13570329_SNP [dm3] 3R_17744607_SNP [dm6]	A	C	7.412e^-6	0.479	INTRON TyrRII	TF binding site mE1_TFBS_cad
3L	412583	3L_412583_SNP [dm3] 3L_412583_SNP [dm6]	G	T	7.422e^-6	0.479	INTERGENIC
3L	4737859	3L_4737859_SNP [dm3] 3L_4737859_SNP [dm6]	A	G	7.570e^-6	0.479	INTRON RhoGEF64C
3R	15077609	3R_15077609_SNP [dm3] 3R_19251887_SNP [dm6]	C	A	7.729e^-6	0.479	INTERGENIC
X	10543785	X_10543785_SNP [dm3] X_10649752_SNP [dm6]	T	C	7.820e^-6	0.479	INTRON X11Lbeta
2L	19840286	2L_19840286_SNP [dm3] 2L_19840286_SNP [dm6]	C	A	7.922e^-6	0.479	INTRON sick
3L	711857	3L_711857_SNP [dm3] 3L_711857_SNP [dm6]	A	C	8.521e^-6	0.485	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	5709131	3R_5709131_SNP [dm3] 3R_9883409_SNP [dm6]	C	G	8.537e^-6	0.485	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	712337	3L_712337_SNP [dm3] 3L_712337_SNP [dm6]	G	T	8.978e^-6	0.495	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	14695099	2L_14695099_SNP [dm3] 2L_14695099_SNP [dm6]	A	C	9.337e^-6	0.5	INTERGENIC
3L	16896011	3L_16896011_SNP [dm3] 3L_16902911_SNP [dm6]	A	T	9.637e^-6	0.501	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo
3L	712226	3L_712226_SNP [dm3] 3L_712226_SNP [dm6]	C	A	1.112e^-5	0.501	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	19835455	2L_19835455_SNP [dm3] 2L_19835455_SNP [dm6]	A	C	1.148e^-5	0.501	INTRON sick
3R	12970762	3R_12970762_SNP [dm3] 3R_17145040_SNP [dm6]	A	T	1.150e^-5	0.501	UTR_3_PRIME m-cup DOWNSTREAM m-cup
3L	4737892	3L_4737892_SNP [dm3] 3L_4737892_SNP [dm6]	T	C	1.169e^-5	0.501	INTRON RhoGEF64C
3L	712374	3L_712374_SNP [dm3] 3L_712374_SNP [dm6]	G	C	1.199e^-5	0.501	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	8207850	3L_8207850_SNP [dm3] 3L_8214750_SNP [dm6]	T	C	1.215e^-5	0.501	UPSTREAM CG8012 INTERGENIC
X	21160844	X_21160844_SNP [dm3] X_21289817_SNP [dm6]	G	C	1.217e^-5	0.501	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24413609	3R_24413609_SNP [dm3] 3R_28587887_SNP [dm6]	C	T	1.220e^-5	0.501	EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	8134266	2R_8134266_SNP [dm3] 2R_12246761_SNP [dm6]	C	T	1.254e^-5	0.501	EXON CR44315
X	4093939	X_4093939_SNP [dm3] X_4199906_SNP [dm6]	A	C	1.260e^-5	0.501	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	9638379	X_9638379_SNP [dm3] X_9744346_SNP [dm6]	T	C	1.278e^-5	0.501	INTRON Sp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17696524	2R_17696524_SNP [dm3] 2R_21809019_SNP [dm6]	T	C	1.307e^-5	0.501	INTERGENIC
3L	677700	3L_677700_SNP [dm3] 3L_677700_SNP [dm6]	T	A	1.348e^-5	0.501	DOWNSTREAM CG17129 INTERGENIC
3L	7479975	3L_7479975_SNP [dm3] 3L_7486875_SNP [dm6]	T	C	1.377e^-5	0.501	SYNONYMOUS_CODING mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13549841	3L_13549841_SNP [dm3] 3L_13556741_SNP [dm6]	A	G	1.388e^-5	0.501	INTRON bru-3
3L	712335	3L_712335_SNP [dm3] 3L_712335_SNP [dm6]	T	A	1.396e^-5	0.501	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	2868309	3R_2868309_SNP [dm3] 3R_7042587_SNP [dm6]	G	A	1.435e^-5	0.501	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	11809705	2R_11809705_SNP [dm3] 2R_15922200_SNP [dm6]	G	A	1.444e^-5	0.501	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
3R	2868311	3R_2868311_INS [dm3] 3R_7042589_INS [dm6]	C	CGGA	1.504e^-5	0.513	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	413912	3L_413912_SNP [dm3] 3L_413912_SNP [dm6]	C	T	1.673e^-5	0.555	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	2645866	3L_2645866_SNP [dm3] 3L_2645866_SNP [dm6]	A	G	1.687e^-5	0.555	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12792346	3L_12792346_SNP [dm3] 3L_12799246_SNP [dm6]	G	C	1.751e^-5	0.566	INTRON Atg1
2L	19802428	2L_19802428_SNP [dm3] 2L_19802428_SNP [dm6]	A	G	1.785e^-5	0.567	INTRON sick
2L	387696	2L_387696_SNP [dm3] 2L_387696_SNP [dm6]	T	A	1.864e^-5	0.575	DOWNSTREAM al INTERGENIC
2R	6016574	2R_6016574_SNP [dm3] 2R_10129069_SNP [dm6]	G	A	1.888e^-5	0.575	INTRON gem	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	15428091	2R_15428091_SNP [dm3] 2R_19540586_SNP [dm6]	C	A	1.919e^-5	0.575	INTRON sm
X	17952248	X_17952248_SNP [dm3] X_18058215_SNP [dm6]	C	A	1.982e^-5	0.575	INTRON Sh
X	4093930	X_4093930_SNP [dm3] X_4199897_SNP [dm6]	T	C	1.995e^-5	0.575	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	9287766	X_9287766_SNP [dm3] X_9393733_SNP [dm6]	T	C	2.048e^-5	0.575	INTRON mgl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	13136787	X_13136787_SNP [dm3] X_13242754_SNP [dm6]	C	T	2.176e^-5	0.575	INTRON mew	TF binding site BDTNP1_TFBS_da
X	20215260	X_20215260_SNP [dm3] X_20344233_SNP [dm6]	A	C	2.188e^-5	0.575	INTERGENIC	transposable element FlyBase
3L	13339531	3L_13339531_SNP [dm3] 3L_13346431_SNP [dm6]	G	T	2.200e^-5	0.575	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	3469607	3R_3469607_SNP [dm3] 3R_7643885_SNP [dm6]	C	T	2.208e^-5	0.575	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16289150	2R_16289150_SNP [dm3] 2R_20401645_SNP [dm6]	G	A	2.232e^-5	0.575	INTERGENIC
2L	2021719	2L_2021719_SNP [dm3] 2L_2021719_SNP [dm6]	G	A	2.243e^-5	0.575	INTRON CG4238
3L	12792354	3L_12792354_SNP [dm3] 3L_12799254_SNP [dm6]	T	G	2.269e^-5	0.575	INTRON Atg1
2R	8133682	2R_8133682_SNP [dm3] 2R_12246177_SNP [dm6]	T	A	2.341e^-5	0.575	DOWNSTREAM CR44315 INTERGENIC
2R	2957893	2R_2957893_SNP [dm3] 2R_7070388_SNP [dm6]	A	C	2.361e^-5	0.575	UPSTREAM tRNA:CR30298 DOWNSTREAM CG12831 & 2 others INTERGENIC
3L	3966618	3L_3966618_DEL [dm3] 3L_3966618_DEL [dm6]	CCGCTGTCC	C	2.367e^-5	0.575	INTERGENIC
2L	13626041	2L_13626041_SNP [dm3] 2L_13626041_SNP [dm6]	G	A	2.375e^-5	0.575	INTRON kuz
X	17952250	X_17952250_SNP [dm3] X_18058217_SNP [dm6]	G	A	2.426e^-5	0.575	INTRON Sh
3R	14972052	3R_14972052_SNP [dm3] 3R_19146330_SNP [dm6]	A	G	2.437e^-5	0.575	INTRON Ppcs
3L	16725723	3L_16725723_SNP [dm3] 3L_16732623_SNP [dm6]	C	G	2.494e^-5	0.575	UPSTREAM CG9701 INTERGENIC
X	5228937	X_5228937_INS [dm3] X_5334904_INS [dm6]	C	CTACACTCGCAAAAAAAAAA...	2.512e^-5	0.575	DOWNSTREAM CanB INTERGENIC
3R	24353994	3R_24353994_SNP [dm3] 3R_28528272_SNP [dm6]	G	A	2.515e^-5	0.575	NON_SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5160275	2L_5160275_SNP [dm3] 2L_5160275_SNP [dm6]	T	G	2.517e^-5	0.575	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4400876	3R_4400876_INS [dm3] 3R_8575154_INS [dm6]	T	TT	2.610e^-5	0.583	INTERGENIC
2R	8144116	2R_8144116_SNP [dm3] 2R_12256611_SNP [dm6]	T	C	2.663e^-5	0.583	UPSTREAM Vha36-2 DOWNSTREAM CG13168 INTERGENIC
3R	25570751	3R_25570751_SNP [dm3] 3R_29745029_SNP [dm6]	A	C	2.681e^-5	0.583	START_GAINED CG7609 UTR_5_PRIME CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14689608	2L_14689608_SNP [dm3] 2L_14689608_SNP [dm6]	A	G	2.711e^-5	0.583	UPSTREAM osp INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8447265	2L_8447265_SNP [dm3] 2L_8447265_SNP [dm6]	A	G	2.752e^-5	0.583	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	19837577	2L_19837577_SNP [dm3] 2L_19837577_SNP [dm6]	G	A	2.754e^-5	0.583	INTRON sick	TF binding site mE1_TFBS_cad
2R	8144149	2R_8144149_SNP [dm3] 2R_12256644_SNP [dm6]	T	A	2.767e^-5	0.583	UPSTREAM Vha36-2 DOWNSTREAM CG13168 INTERGENIC
X	13137037	X_13137037_SNP [dm3] X_13243004_SNP [dm6]	C	T	2.816e^-5	0.587	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	15428084	2R_15428084_SNP [dm3] 2R_19540579_SNP [dm6]	A	G	2.908e^-5	0.587	INTRON sm
2L	2021720	2L_2021720_SNP [dm3] 2L_2021720_SNP [dm6]	T	A	2.943e^-5	0.587	INTRON CG4238
2L	17289541	2L_17289541_SNP [dm3] 2L_17289541_SNP [dm6]	C	T	2.943e^-5	0.587	INTERGENIC
X	13137038	X_13137038_SNP [dm3] X_13243005_SNP [dm6]	A	G	2.944e^-5	0.587	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	712343	3L_712343_SNP [dm3] 3L_712343_SNP [dm6]	A	C	3.005e^-5	0.587	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	15483333	3L_15483333_SNP [dm3] 3L_15490233_SNP [dm6]	T	C	3.077e^-5	0.587	INTERGENIC
2L	19941325	2L_19941325_SNP [dm3] 2L_19941325_SNP [dm6]	C	T	3.085e^-5	0.587	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3L	712319	3L_712319_INS [dm3] 3L_712319_INS [dm6]	C	CA	3.103e^-5	0.587	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712342	3L_712342_SNP [dm3] 3L_712342_SNP [dm6]	A	T	3.103e^-5	0.587	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	837693	3L_837693_SNP [dm3] 3L_837693_SNP [dm6]	A	C	3.213e^-5	0.587	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	19940949	2L_19940949_SNP [dm3] 2L_19940949_SNP [dm6]	A	T	3.214e^-5	0.587	INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2554105	X_2554105_SNP [dm3] X_2660072_SNP [dm6]	T	C	3.245e^-5	0.587	SYNONYMOUS_CODING sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	6342918	3R_6342918_SNP [dm3] 3R_10517196_SNP [dm6]	T	C	3.292e^-5	0.587	INTRON hth	TF binding site mE1_TFBS_Trl
2R	15743118	2R_15743118_SNP [dm3] 2R_19855613_SNP [dm6]	T	C	3.307e^-5	0.587	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	1931082	X_1931082_SNP [dm3] X_2037049_SNP [dm6]	A	G	3.366e^-5	0.587	UPSTREAM Actn INTRON Actn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	21930162	X_21930162_SNP [dm3] X_22528326_SNP [dm6]	C	T	3.374e^-5	0.587	SYNONYMOUS_CODING CG17600
3R	12950029	3R_12950029_DEL [dm3] 3R_17124307_DEL [dm6]	TT	T	3.551e^-5	0.587	UPSTREAM CG45079 INTRON cher
2R	4950454	2R_4950454_SNP [dm3] 2R_9062949_SNP [dm6]	G	A	3.597e^-5	0.587	INTRON ana	regulatory region REDfly_CRMs
X	21921468	X_21921468_SNP [dm3] X_22519632_SNP [dm6]	A	G	3.625e^-5	0.587	INTRON CG17600
2L	5559719	2L_5559719_SNP [dm3] 2L_5559719_SNP [dm6]	T	C	3.655e^-5	0.587	SYNONYMOUS_CODING GluRIIB DOWNSTREAM GluRIIA	TF binding site mE1_TFBS_inv
3L	21386998	3L_21386998_SNP [dm3] 3L_21393898_SNP [dm6]	G	A	3.706e^-5	0.587	INTRON rgn
X	5661124	X_5661124_SNP [dm3] X_5767091_SNP [dm6]	G	A	3.712e^-5	0.587	SYNONYMOUS_CODING CG3097 INTRON CG42699	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14368783	3R_14368783_SNP [dm3] 3R_18543061_SNP [dm6]	A	G	3.727e^-5	0.587	INTRON fru
3L	10282597	3L_10282597_SNP [dm3] 3L_10289497_SNP [dm6]	A	G	3.765e^-5	0.587	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12632367	3L_12632367_SNP [dm3] 3L_12639267_SNP [dm6]	A	G	3.767e^-5	0.587	INTRON CR32111
2L	19896738	2L_19896738_SNP [dm3] 2L_19896738_SNP [dm6]	T	A	3.783e^-5	0.587	INTRON sick
3R	4340520	3R_4340520_SNP [dm3] 3R_8514798_SNP [dm6]	T	A	3.812e^-5	0.587	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	5115825	X_5115825_SNP [dm3] X_5221792_SNP [dm6]	A	G	3.854e^-5	0.587	INTRON CG15465 & 1 other
X	13691257	X_13691257_SNP [dm3] X_13797224_SNP [dm6]	C	T	3.866e^-5	0.587	SYNONYMOUS_CODING CG10996 INTRON inaE
2R	19504761	2R_19504761_SNP [dm3] 2R_23617238_SNP [dm6]	T	C	3.889e^-5	0.587	UPSTREAM CG17664 INTERGENIC	TF binding site mE1_TFBS_sens
3R	8388326	3R_8388326_SNP [dm3] 3R_12562604_SNP [dm6]	C	T	3.941e^-5	0.587	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	3.971e^-5	0.587	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25912708	3R_25912708_SNP [dm3] 3R_30086986_SNP [dm6]	C	A	3.973e^-5	0.587	INTRON sima
2R	6669458	2R_6669458_SNP [dm3] 2R_10781953_SNP [dm6]	T	A	3.987e^-5	0.587	UPSTREAM CR44299 INTRON CG33144	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	16987115	3R_16987115_SNP [dm3] 3R_21161393_SNP [dm6]	A	T	4.028e^-5	0.587	UPSTREAM CG10824 INTRON SNF4Agamma
X	17952258	X_17952258_SNP [dm3] X_18058225_SNP [dm6]	C	A	4.107e^-5	0.587	INTRON Sh
X	3289214	X_3289214_SNP [dm3] X_3395181_SNP [dm6]	A	G	4.113e^-5	0.587	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26871242	3R_26871242_SNP [dm3] 3R_31045520_SNP [dm6]	G	A	4.130e^-5	0.587	UPSTREAM CG33920 INTRON CanA1
X	2926031	X_2926031_SNP [dm3] X_3031998_SNP [dm6]	C	A	4.197e^-5	0.587	INTRON kirre
X	14325040	X_14325040_SNP [dm3] X_14431007_SNP [dm6]	C	T	4.218e^-5	0.587	INTRON dpr8
X	4461691	X_4461691_SNP [dm3] X_4567658_SNP [dm6]	G	A	4.223e^-5	0.587	INTRON CR32773
2L	19903507	2L_19903507_SNP [dm3] 2L_19903507_SNP [dm6]	C	T	4.232e^-5	0.587	INTRON sick
3L	16202334	3L_16202334_SNP [dm3] 3L_16209234_SNP [dm6]	A	T	4.255e^-5	0.587	INTERGENIC	TF binding site mE1_TFBS_cad
3L	14813948	3L_14813948_SNP [dm3] 3L_14820848_SNP [dm6]	G	A	4.321e^-5	0.587	INTRON CG17839
3L	712455	3L_712455_SNP [dm3] 3L_712455_SNP [dm6]	C	T	4.470e^-5	0.587	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	27146681	3R_27146681_SNP [dm3] 3R_31320959_SNP [dm6]	C	A	4.567e^-5	0.587	INTRON CG34347
3L	411916	3L_411916_SNP [dm3] 3L_411916_SNP [dm6]	A	G	4.613e^-5	0.587	INTERGENIC
2L	5511194	2L_5511194_SNP [dm3] 2L_5511194_SNP [dm6]	A	C	4.665e^-5	0.587	INTERGENIC
2L	19941028	2L_19941028_SNP [dm3] 2L_19941028_SNP [dm6]	G	A	4.681e^-5	0.587	INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	4.722e^-5	0.587	EXON CR44950
X	16690403	X_16690403_SNP [dm3] X_16796370_SNP [dm6]	T	A	4.752e^-5	0.587	UTR_3_PRIME CG4768 DOWNSTREAM CG9132 & 1 other
2L	19835414	2L_19835414_SNP [dm3] 2L_19835414_SNP [dm6]	C	T	4.765e^-5	0.587	INTRON sick
2L	19930941	2L_19930941_SNP [dm3] 2L_19930941_SNP [dm6]	G	A	4.783e^-5	0.587	INTRON sick
3L	502675	3L_502675_SNP [dm3] 3L_502675_SNP [dm6]	T	C	4.812e^-5	0.587	INTRON klar
3L	13488539	3L_13488539_SNP [dm3] 3L_13495439_SNP [dm6]	C	T	4.828e^-5	0.587	UPSTREAM Tgi INTRON Tgi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16202321	3L_16202321_SNP [dm3] 3L_16209221_SNP [dm6]	G	T	4.835e^-5	0.587	INTERGENIC	TF binding site mE1_TFBS_cad
3R	25570756	3R_25570756_SNP [dm3] 3R_29745034_SNP [dm6]	A	C	4.849e^-5	0.587	START_GAINED CG7609 UTR_5_PRIME CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	712323	3L_712323_SNP [dm3] 3L_712323_SNP [dm6]	T	A	4.970e^-5	0.587	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	8452388	2L_8452388_SNP [dm3] 2L_8452388_SNP [dm6]	G	T	5.076e^-5	0.587	UPSTREAM fu12 INTRON fu12
3L	18694762	3L_18694762_SNP [dm3] 3L_18701662_SNP [dm6]	C	G	5.113e^-5	0.587	INTERGENIC
2L	19839998	2L_19839998_SNP [dm3] 2L_19839998_SNP [dm6]	A	T	5.165e^-5	0.587	INTRON sick
3L	412023	3L_412023_SNP [dm3] 3L_412023_SNP [dm6]	G	T	5.185e^-5	0.587	INTERGENIC
3R	5448700	3R_5448700_SNP [dm3] 3R_9622978_SNP [dm6]	G	T	5.247e^-5	0.587	UTR_5_PRIME CG8312 INTRON CG8312
2L	19901797	2L_19901797_DEL [dm3] 2L_19901797_DEL [dm6]	TAAAAACAAAA...	T	5.275e^-5	0.587	INTRON sick
2L	5867610	2L_5867610_SNP [dm3] 2L_5867610_SNP [dm6]	T	C	5.301e^-5	0.587	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10768281	3R_10768281_SNP [dm3] 3R_14942559_SNP [dm6]	T	G	5.314e^-5	0.587	INTERGENIC
2L	9103236	2L_9103236_SNP [dm3] 2L_9103236_SNP [dm6]	C	T	5.355e^-5	0.587	INTERGENIC
2L	13720507	2L_13720507_SNP [dm3] 2L_13720507_SNP [dm6]	G	T	5.396e^-5	0.587	INTERGENIC
X	21930168	X_21930168_SNP [dm3] X_22528332_SNP [dm6]	T	G	5.397e^-5	0.587	SYNONYMOUS_CODING CG17600
2R	6016548	2R_6016548_SNP [dm3] 2R_10129043_SNP [dm6]	C	T	5.411e^-5	0.587	INTRON gem	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	13139524	3R_13139524_SNP [dm3] 3R_17313802_SNP [dm6]	G	T	5.435e^-5	0.587	INTERGENIC
X	14325039	X_14325039_SNP [dm3] X_14431006_SNP [dm6]	A	T	5.457e^-5	0.587	INTRON dpr8
3L	837662	3L_837662_SNP [dm3] 3L_837662_SNP [dm6]	A	C	5.503e^-5	0.587	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3R	19126952	3R_19126952_SNP [dm3] 3R_23301230_SNP [dm6]	G	A	5.527e^-5	0.587	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16432980	3L_16432980_SNP [dm3] 3L_16439880_SNP [dm6]	A	T	5.531e^-5	0.587	INTRON CG33158 & 1 other
3L	6710275	3L_6710275_SNP [dm3] 3L_6717175_SNP [dm6]	G	A	5.580e^-5	0.587	INTRON ple	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	5228746	X_5228746_SNP [dm3] X_5334713_SNP [dm6]	G	C	5.602e^-5	0.587	DOWNSTREAM CanB INTERGENIC
2R	13506075	2R_13506075_SNP [dm3] 2R_17618570_SNP [dm6]	T	G	5.619e^-5	0.587	UPSTREAM CG44403 INTRON CG10936
X	21921583	X_21921583_SNP [dm3] X_22519747_SNP [dm6]	T	G	5.635e^-5	0.587	INTRON CG17600
2L	19890124	2L_19890124_SNP [dm3] 2L_19890124_SNP [dm6]	T	G	5.651e^-5	0.587	DOWNSTREAM CG10481 INTRON sick
2L	13637068	2L_13637068_SNP [dm3] 2L_13637068_SNP [dm6]	A	C	5.697e^-5	0.587	DOWNSTREAM kuz INTRON kuz
3L	19667126	3L_19667126_SNP [dm3] 3L_19674026_SNP [dm6]	T	C	5.702e^-5	0.587	INTERGENIC
2L	19950201	2L_19950201_SNP [dm3] 2L_19950201_SNP [dm6]	G	T	5.703e^-5	0.587	INTRON sick	TF binding site mE1_TFBS_HSA
X	18454882	X_18454882_SNP [dm3] X_18560849_SNP [dm6]	G	A	5.721e^-5	0.587	INTRON Bx
3L	2645600	3L_2645600_SNP [dm3] 3L_2645600_SNP [dm6]	A	T	5.730e^-5	0.587	INTRON CG1143	TF binding site mE1_TFBS_cad
3R	13682812	3R_13682812_SNP [dm3] 3R_17857090_SNP [dm6]	G	C	5.743e^-5	0.587	INTRON tinc
2L	19821796	2L_19821796_SNP [dm3] 2L_19821796_SNP [dm6]	C	A	5.748e^-5	0.587	INTRON sick
3R	25570650	3R_25570650_SNP [dm3] 3R_29744928_SNP [dm6]	C	T	5.796e^-5	0.587	SYNONYMOUS_CODING CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	22909511	2L_22909511_SNP [dm3] 2L_23016779_SNP [dm6]	G	A	5.853e^-5	0.587	INTRON Cht3
2L	19813910	2L_19813910_SNP [dm3] 2L_19813910_SNP [dm6]	C	T	5.889e^-5	0.587	SYNONYMOUS_CODING CG13962 INTRON sick	TF binding site mE1_TFBS_HSA
3R	25405876	3R_25405876_SNP [dm3] 3R_29580154_SNP [dm6]	A	G	5.892e^-5	0.587	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	4777980	3R_4777980_SNP [dm3] 3R_8952258_SNP [dm6]	C	T	5.903e^-5	0.587	SYNONYMOUS_CODING CG11966	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14815465	3L_14815465_SNP [dm3] 3L_14822365_SNP [dm6]	G	A	5.905e^-5	0.587	INTRON CG17839
3R	24412419	3R_24412419_SNP [dm3] 3R_28586697_SNP [dm6]	G	A	5.920e^-5	0.587	EXON MRE23	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
2L	19822550	2L_19822550_SNP [dm3] 2L_19822550_SNP [dm6]	A	C	6.034e^-5	0.587	INTRON sick
3L	15483312	3L_15483312_SNP [dm3] 3L_15490212_SNP [dm6]	A	G	6.077e^-5	0.587	INTERGENIC
2L	19930981	2L_19930981_SNP [dm3] 2L_19930981_SNP [dm6]	A	G	6.087e^-5	0.587	INTRON sick
3R	21341350	3R_21341350_SNP [dm3] 3R_25515628_SNP [dm6]	G	T	6.098e^-5	0.587	UPSTREAM msi INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	17948777	X_17948777_SNP [dm3] X_18054744_SNP [dm6]	G	A	6.125e^-5	0.587	INTRON Sh
X	5228684	X_5228684_SNP [dm3] X_5334651_SNP [dm6]	C	T	6.146e^-5	0.587	DOWNSTREAM CanB INTERGENIC
3L	17784937	3L_17784937_SNP [dm3] 3L_17791837_SNP [dm6]	C	A	6.164e^-5	0.587	UPSTREAM CG42815 DOWNSTREAM CG42816 INTERGENIC
2L	14695013	2L_14695013_SNP [dm3] 2L_14695013_SNP [dm6]	A	T	6.194e^-5	0.587	INTERGENIC
3R	15077524	3R_15077524_SNP [dm3] 3R_19251802_SNP [dm6]	A	G	6.231e^-5	0.587	INTERGENIC
2R	15874958	2R_15874958_SNP [dm3] 2R_19987453_SNP [dm6]	G	A	6.246e^-5	0.587	INTERGENIC
2L	19901820	2L_19901820_SNP [dm3] 2L_19901820_SNP [dm6]	G	T	6.272e^-5	0.587	INTRON sick
X	2926734	X_2926734_SNP [dm3] X_3032701_SNP [dm6]	C	A	6.281e^-5	0.587	INTRON kirre
2R	19504762	2R_19504762_SNP [dm3] 2R_23617239_SNP [dm6]	G	A	6.292e^-5	0.587	UPSTREAM CG17664 INTERGENIC	TF binding site mE1_TFBS_sens
2L	19804790	2L_19804790_SNP [dm3] 2L_19804790_SNP [dm6]	C	G	6.298e^-5	0.587	INTRON sick
2L	8447278	2L_8447278_SNP [dm3] 2L_8447278_SNP [dm6]	T	G	6.314e^-5	0.587	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	6499760	2L_6499760_SNP [dm3] 2L_6499760_SNP [dm6]	G	A	6.478e^-5	0.587	SYNONYMOUS_CODING CG31637	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	6714238	3L_6714238_SNP [dm3] 3L_6721138_SNP [dm6]	T	C	6.488e^-5	0.587	INTERGENIC
3R	14618452	3R_14618452_SNP [dm3] 3R_18792730_SNP [dm6]	G	A	6.535e^-5	0.587	UPSTREAM CG7720 INTRON CG7720
2L	17289532	2L_17289532_SNP [dm3] 2L_17289532_SNP [dm6]	A	C	6.536e^-5	0.587	INTERGENIC
3L	412168	3L_412168_SNP [dm3] 3L_412168_SNP [dm6]	G	A	6.543e^-5	0.587	INTERGENIC
2L	21736965	2L_21736965_DEL [dm3] 2L_21736965_DEL [dm6]	AGACTCGGACTGTTT...	A	6.558e^-5	0.587	INTERGENIC	transposable element FlyBase
3R	24132528	3R_24132528_SNP [dm3] 3R_28306806_SNP [dm6]	T	A	6.593e^-5	0.587	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	11532943	2R_11532943_SNP [dm3] 2R_15645438_SNP [dm6]	A	G	6.600e^-5	0.587	INTRON CG42524	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	7620847	X_7620847_SNP [dm3] X_7726814_SNP [dm6]	T	C	6.642e^-5	0.587	SYNONYMOUS_CODING NELF-B DOWNSTREAM Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9513593	3L_9513593_SNP [dm3] 3L_9520493_SNP [dm6]	G	T	6.650e^-5	0.587	INTRON CG33700
3L	712501	3L_712501_SNP [dm3] 3L_712501_SNP [dm6]	C	G	6.764e^-5	0.587	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	411206	3L_411206_INS [dm3] 3L_411206_INS [dm6]	C	CA	6.768e^-5	0.587	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13539767	2R_13539767_SNP [dm3] 2R_17652262_SNP [dm6]	C	A	6.918e^-5	0.587	INTRON CCHa1-R
2L	19841857	2L_19841857_SNP [dm3] 2L_19841857_SNP [dm6]	T	C	6.946e^-5	0.587	INTRON sick
X	17952259	X_17952259_SNP [dm3] X_18058226_SNP [dm6]	T	C	6.961e^-5	0.587	INTRON Sh
3R	25570319	3R_25570319_SNP [dm3] 3R_29744597_SNP [dm6]	A	G	6.971e^-5	0.587	SYNONYMOUS_CODING CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	7273988	3R_7273988_SNP [dm3] 3R_11448266_SNP [dm6]	C	T	6.978e^-5	0.587	UTR_5_PRIME sals INTRON CG17230 & 1 other
2L	19890129	2L_19890129_SNP [dm3] 2L_19890129_SNP [dm6]	G	A	6.985e^-5	0.587	DOWNSTREAM CG10481 INTRON sick
2L	5862491	2L_5862491_SNP [dm3] 2L_5862491_SNP [dm6]	C	T	6.992e^-5	0.587	INTRON rau
3R	15077482	3R_15077482_SNP [dm3] 3R_19251760_SNP [dm6]	G	A	6.995e^-5	0.587	INTERGENIC
2L	19890126	2L_19890126_SNP [dm3] 2L_19890126_SNP [dm6]	T	G	7.001e^-5	0.587	DOWNSTREAM CG10481 INTRON sick
2R	17590899	2R_17590899_SNP [dm3] 2R_21703394_SNP [dm6]	G	A	7.007e^-5	0.587	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3R	4339924	3R_4339924_SNP [dm3] 3R_8514202_SNP [dm6]	A	G	7.052e^-5	0.587	INTERGENIC
2L	14686016	2L_14686016_SNP [dm3] 2L_14686016_SNP [dm6]	A	G	7.057e^-5	0.587	INTRON osp
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	7.061e^-5	0.587	INTRON dnc
3L	13310290	3L_13310290_SNP [dm3] 3L_13317190_SNP [dm6]	T	G	7.137e^-5	0.587	INTERGENIC
3R	2952106	3R_2952106_SNP [dm3] 3R_7126384_SNP [dm6]	G	A	7.140e^-5	0.587	UTR_3_PRIME CG10098 & 1 other
3R	19200358	3R_19200358_SNP [dm3] 3R_23374636_SNP [dm6]	A	G	7.200e^-5	0.587	DOWNSTREAM CG42828 INTERGENIC
3R	11322549	3R_11322549_SNP [dm3] 3R_15496827_SNP [dm6]	T	C	7.240e^-5	0.587	INTERGENIC
3R	24132555	3R_24132555_SNP [dm3] 3R_28306833_SNP [dm6]	A	G	7.264e^-5	0.587	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	7620883	X_7620883_SNP [dm3] X_7726850_SNP [dm6]	G	A	7.264e^-5	0.587	SYNONYMOUS_CODING NELF-B DOWNSTREAM Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19890116	2L_19890116_SNP [dm3] 2L_19890116_SNP [dm6]	T	A	7.269e^-5	0.587	DOWNSTREAM CG10481 INTRON sick
3L	7461509	3L_7461509_SNP [dm3] 3L_7468409_SNP [dm6]	G	T	7.402e^-5	0.587	UTR_3_PRIME CG42660 & 2 others
2R	18278806	2R_18278806_SNP [dm3] 2R_22391301_SNP [dm6]	A	G	7.427e^-5	0.587	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1109916	3L_1109916_SNP [dm3] 3L_1109916_SNP [dm6]	C	T	7.440e^-5	0.587	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
X	2814871	X_2814871_INS [dm3] X_2920838_INS [dm6]	T	TTT	7.465e^-5	0.587	INTRON kirre & 1 other
X	2814875	X_2814875_SNP [dm3] X_2920842_SNP [dm6]	T	C	7.465e^-5	0.587	INTRON kirre & 1 other
2R	20161899	2R_20161899_SNP [dm3] 2R_24274376_SNP [dm6]	G	A	7.483e^-5	0.587	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	19802421	2L_19802421_SNP [dm3] 2L_19802421_SNP [dm6]	A	C	7.504e^-5	0.587	INTRON sick
X	11409403	X_11409403_SNP [dm3] X_11515370_SNP [dm6]	A	T	7.506e^-5	0.587	INTRON Drak	TF binding site mE1_TFBS_Kr
3R	25973021	3R_25973021_SNP [dm3] 3R_30147299_SNP [dm6]	T	C	7.511e^-5	0.587	INTRON AdoR
3L	7479886	3L_7479886_SNP [dm3] 3L_7486786_SNP [dm6]	C	T	7.559e^-5	0.587	INTRON mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8956572	2L_8956572_SNP [dm3] 2L_8956572_SNP [dm6]	A	T	7.587e^-5	0.587	UPSTREAM CG31886 INTRON CG31886	TF binding site BDTNP1_TFBS_twi mE1_TFBS_zfh1
2L	15959956	2L_15959956_SNP [dm3] 2L_15959956_SNP [dm6]	G	C	7.674e^-5	0.587	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
X	8291487	X_8291487_SNP [dm3] X_8397454_SNP [dm6]	T	A	7.697e^-5	0.587	UTR_3_PRIME CG15345
2L	15090507	2L_15090507_SNP [dm3] 2L_15090507_SNP [dm6]	T	C	7.699e^-5	0.587	INTRON CG15270
3R	25540289	3R_25540289_SNP [dm3] 3R_29714567_SNP [dm6]	G	A	7.720e^-5	0.587	NON_SYNONYMOUS_CODING Obp99d UPSTREAM CR45569 DOWNSTREAM Dup99B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	17952263	X_17952263_SNP [dm3] X_18058230_SNP [dm6]	A	G	7.737e^-5	0.587	INTRON Sh
3L	15483234	3L_15483234_SNP [dm3] 3L_15490134_SNP [dm6]	A	C	7.770e^-5	0.587	INTERGENIC
3R	4339621	3R_4339621_SNP [dm3] 3R_8513899_SNP [dm6]	C	G	7.821e^-5	0.587	UPSTREAM Or85c INTERGENIC
2L	1604344	2L_1604344_SNP [dm3] 2L_1604344_SNP [dm6]	G	A	7.852e^-5	0.587	SPLICE_SITE_REGION haf INTRON CG31935 & 1 other
2R	17267393	2R_17267393_SNP [dm3] 2R_21379888_SNP [dm6]	A	C	7.882e^-5	0.587	UPSTREAM cv-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	19841561	2L_19841561_SNP [dm3] 2L_19841561_SNP [dm6]	C	A	7.890e^-5	0.587	INTRON sick
3L	18533592	3L_18533592_SNP [dm3] 3L_18540492_SNP [dm6]	A	C	7.941e^-5	0.588	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	11525805	3L_11525805_SNP [dm3] 3L_11532705_SNP [dm6]	G	A	8.071e^-5	0.588	INTRON Mob2
3L	14565106	3L_14565106_DEL [dm3] 3L_14572006_DEL [dm6]	TT	T	8.084e^-5	0.588	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15173056	2R_15173056_DEL [dm3] 2R_19285551_DEL [dm6]	AGTCTAACAAAATTAGTA...	A	8.086e^-5	0.588	UTR_3_PRIME CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
3L	2116038	3L_2116038_SNP [dm3] 3L_2116038_SNP [dm6]	T	C	8.103e^-5	0.588	UPSTREAM sls INTERGENIC	TF binding site mE1_TFBS_Trl
3L	8590702	3L_8590702_SNP [dm3] 3L_8597602_SNP [dm6]	G	A	8.112e^-5	0.588	NON_SYNONYMOUS_CODING CG43078	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20073290	2L_20073290_SNP [dm3] 2L_20073290_SNP [dm6]	C	T	8.118e^-5	0.588	UTR_3_PRIME bwa DOWNSTREAM pr INTRON bwa
2L	19819855	2L_19819855_SNP [dm3] 2L_19819855_SNP [dm6]	G	A	8.325e^-5	0.596	INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	18641597	3L_18641597_DEL [dm3] 3L_18648497_DEL [dm6]	AACACA	GGGTT	8.353e^-5	0.596	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7278969	3R_7278969_SNP [dm3] 3R_11453247_SNP [dm6]	A	G	8.356e^-5	0.596	SYNONYMOUS_CODING PGRP-LB INTRON CG17230	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16685557	X_16685557_SNP [dm3] X_16791524_SNP [dm6]	T	A	8.375e^-5	0.596	UPSTREAM CG4768 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24132562	3R_24132562_SNP [dm3] 3R_28306840_SNP [dm6]	A	T	8.394e^-5	0.596	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	13653673	X_13653673_SNP [dm3] X_13759640_SNP [dm6]	C	T	8.449e^-5	0.598	SYNONYMOUS_CODING Yp3	TF binding site mE1_TFBS_sens
3L	15483232	3L_15483232_SNP [dm3] 3L_15490132_SNP [dm6]	A	T	8.598e^-5	0.604	INTERGENIC
3R	15101654	3R_15101654_DEL [dm3] 3R_19275932_DEL [dm6]	AA	A	8.654e^-5	0.604	INTERGENIC
X	12937100	X_12937100_SNP [dm3] X_13043067_SNP [dm6]	G	A	8.679e^-5	0.604	INTRON rad
3L	4159131	3L_4159131_DEL [dm3] 3L_4159131_DEL [dm6]	GG	G	8.705e^-5	0.604	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
X	18636906	X_18636906_SNP [dm3] X_18742873_SNP [dm6]	C	T	8.715e^-5	0.604	INTERGENIC
3R	5447308	3R_5447308_SNP [dm3] 3R_9621586_SNP [dm6]	G	T	8.727e^-5	0.604	NON_SYNONYMOUS_CODING CG8312	TF binding site mE1_TFBS_cad
2R	5977602	2R_5977602_SNP [dm3] 2R_10090097_SNP [dm6]	C	T	8.888e^-5	0.613	INTRON CG2269
3R	25540452	3R_25540452_SNP [dm3] 3R_29714730_SNP [dm6]	T	G	8.966e^-5	0.613	SYNONYMOUS_CODING Obp99d DOWNSTREAM Dup99B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	4737951	3L_4737951_SNP [dm3] 3L_4737951_SNP [dm6]	C	A	8.967e^-5	0.613	INTRON RhoGEF64C
3R	4349280	3R_4349280_SNP [dm3] 3R_8523558_SNP [dm6]	T	C	9.014e^-5	0.613	UPSTREAM CG31259 DOWNSTREAM CG31454 INTERGENIC
2R	11804667	2R_11804667_SNP [dm3] 2R_15917162_SNP [dm6]	T	G	9.039e^-5	0.613	DOWNSTREAM CR44373 INTRON sli	TF binding site mE1_TFBS_cad
2L	378373	2L_378373_SNP [dm3] 2L_378373_SNP [dm6]	A	T	9.086e^-5	0.613	UTR_5_PRIME al	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3R	25566123	3R_25566123_SNP [dm3] 3R_29740401_SNP [dm6]	G	C	9.106e^-5	0.613	UTR_5_PRIME CG1969 INTRON CG1969	TF binding site BDTNP1_TFBS_dl
2R	18985584	2R_18985584_SNP [dm3] 2R_23098061_SNP [dm6]	T	C	9.123e^-5	0.613	INTERGENIC
2R	20179361	2R_20179361_SNP [dm3] 2R_24291838_SNP [dm6]	C	T	9.195e^-5	0.616	DOWNSTREAM nvy INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	11809811	2R_11809811_SNP [dm3] 2R_15922306_SNP [dm6]	T	C	9.269e^-5	0.618	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
2L	19898638	2L_19898638_SNP [dm3] 2L_19898638_SNP [dm6]	G	A	9.313e^-5	0.619	INTRON sick
X	21921575	X_21921575_SNP [dm3] X_22519739_SNP [dm6]	A	G	9.347e^-5	0.619	INTRON CG17600
3L	4741046	3L_4741046_SNP [dm3] 3L_4741046_SNP [dm6]	G	A	9.402e^-5	0.621	INTRON RhoGEF64C
3L	7060577	3L_7060577_SNP [dm3] 3L_7067477_SNP [dm6]	C	T	9.463e^-5	0.622	DOWNSTREAM CG32391 INTRON CG8641 & 1 other
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	9.505e^-5	0.623	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19802446	2L_19802446_SNP [dm3] 2L_19802446_SNP [dm6]	A	G	9.611e^-5	0.625	INTRON sick
3R	24132729	3R_24132729_SNP [dm3] 3R_28307007_SNP [dm6]	T	A	9.659e^-5	0.625	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	8480553	3R_8480553_SNP [dm3] 3R_12654831_SNP [dm6]	T	C	9.723e^-5	0.625	UTR_5_PRIME CG6225 INTRON CG6225	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2646481	3L_2646481_SNP [dm3] 3L_2646481_SNP [dm6]	T	C	9.763e^-5	0.625	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad
X	13828560	X_13828560_SNP [dm3] X_13934527_SNP [dm6]	C	A	9.801e^-5	0.625	INTRON mamo	TF binding site mE1_TFBS_HSA
3R	5448817	3R_5448817_SNP [dm3] 3R_9623095_SNP [dm6]	C	A	9.815e^-5	0.625	INTRON CG8312	TF binding site mE1_TFBS_cad
2R	20161833	2R_20161833_SNP [dm3] 2R_24274310_SNP [dm6]	C	T	9.826e^-5	0.625	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	15117802	3R_15117802_SNP [dm3] 3R_19292080_SNP [dm6]	G	T	9.861e^-5	0.625	INTERGENIC
X	5058704	X_5058704_SNP [dm3] X_5164671_SNP [dm6]	T	C	9.870e^-5	0.625	UTR_5_PRIME CG15465 & 1 other UPSTREAM CG15465 & 1 other INTRON rg	TF binding site mE1_TFBS_Trl
3L	7015107	3L_7015107_SNP [dm3] 3L_7022007_SNP [dm6]	C	G	9.972e^-5	0.625	INTRON Mp
2R	5977605	2R_5977605_SNP [dm3] 2R_10090100_SNP [dm6]	A	G	1.009e^-4	0.625	INTRON CG2269
2L	15031960	2L_15031960_SNP [dm3] 2L_15031960_SNP [dm6]	T	G	1.011e^-4	0.625	UPSTREAM CG31832 INTRON GABA-B-R1
X	10544076	X_10544076_SNP [dm3] X_10650043_SNP [dm6]	C	T	1.011e^-4	0.625	INTRON X11Lbeta
X	8626783	X_8626783_SNP [dm3] X_8732750_SNP [dm6]	T	A	1.015e^-4	0.625	INTERGENIC
3L	14817116	3L_14817116_SNP [dm3] 3L_14824016_SNP [dm6]	A	T	1.025e^-4	0.625	INTRON CG17839
3R	965045	3R_965045_SNP [dm3] 3R_5139323_SNP [dm6]	G	A	1.026e^-4	0.625	UPSTREAM CG12589 INTERGENIC
3L	837029	3L_837029_SNP [dm3] 3L_837029_SNP [dm6]	A	G	1.028e^-4	0.625	SYNONYMOUS_CODING CG13901 UPSTREAM CG13887 DOWNSTREAM CG42554	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
3L	16202369	3L_16202369_SNP [dm3] 3L_16209269_SNP [dm6]	G	A	1.030e^-4	0.625	INTERGENIC	TF binding site mE1_TFBS_cad
2R	9147422	2R_9147422_SNP [dm3] 2R_13259917_SNP [dm6]	A	T	1.033e^-4	0.625	UPSTREAM CG42319 INTERGENIC
2R	10348395	2R_10348395_SNP [dm3] 2R_14460890_SNP [dm6]	C	A	1.033e^-4	0.625	INTRON Oaz	TF binding site mE1_TFBS_cad
3R	12971257	3R_12971257_SNP [dm3] 3R_17145535_SNP [dm6]	A	C	1.036e^-4	0.625	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3R	12971260	3R_12971260_DEL [dm3] 3R_17145538_DEL [dm6]	AGGTAAGCATCCTA...	G	1.036e^-4	0.625	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3L	3873722	3L_3873722_SNP [dm3] 3L_3873722_SNP [dm6]	A	C	1.036e^-4	0.625	INTERGENIC	TF binding site mE1_TFBS_cad
3L	4821762	3L_4821762_DEL [dm3] 3L_4821762_DEL [dm6]	ATTCTAGCACA...	A	1.039e^-4	0.625	INTRON Dhc64C
3R	25570840	3R_25570840_SNP [dm3] 3R_29745118_SNP [dm6]	C	T	1.041e^-4	0.625	UPSTREAM IntS11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16135324	2L_16135324_DEL [dm3] 2L_16135324_DEL [dm6]	GG	G	1.048e^-4	0.625	UPSTREAM CG34168 DOWNSTREAM CR44871 & 1 other INTERGENIC
2L	372959	2L_372959_SNP [dm3] 2L_372959_SNP [dm6]	G	T	1.052e^-4	0.625	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	13310271	3L_13310271_SNP [dm3] 3L_13317171_SNP [dm6]	C	T	1.052e^-4	0.625	INTERGENIC
2R	3603547	2R_3603547_SNP [dm3] 2R_7716042_SNP [dm6]	T	G	1.052e^-4	0.625	NON_SYNONYMOUS_CODING CG1946 DOWNSTREAM CG18812	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	412601	3L_412601_SNP [dm3] 3L_412601_SNP [dm6]	T	C	1.053e^-4	0.625	INTERGENIC
3R	4342921	3R_4342921_SNP [dm3] 3R_8517199_SNP [dm6]	C	T	1.063e^-4	0.626	UPSTREAM CG11737 INTERGENIC
2L	19797389	2L_19797389_SNP [dm3] 2L_19797389_SNP [dm6]	T	C	1.064e^-4	0.626	INTRON sick
2L	19960413	2L_19960413_SNP [dm3] 2L_19960413_SNP [dm6]	C	T	1.068e^-4	0.626	SYNONYMOUS_CODING CG34051 DOWNSTREAM CoIV & 1 other	TF binding site mE1_TFBS_sens
X	2552057	X_2552057_SNP [dm3] X_2658024_SNP [dm6]	G	T	1.069e^-4	0.626	UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14585253	2R_14585253_SNP [dm3] 2R_18697748_SNP [dm6]	G	C	1.073e^-4	0.627	DOWNSTREAM CG15071 INTRON Sik3
3L	18641613	3L_18641613_SNP [dm3] 3L_18648513_SNP [dm6]	A	T	1.087e^-4	0.63	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	712322	3L_712322_SNP [dm3] 3L_712322_SNP [dm6]	A	G	1.092e^-4	0.63	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	9104792	2L_9104792_SNP [dm3] 2L_9104792_SNP [dm6]	A	G	1.094e^-4	0.63	INTERGENIC
3L	9685669	3L_9685669_SNP [dm3] 3L_9692569_SNP [dm6]	A	G	1.102e^-4	0.63	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	8133288	2R_8133288_SNP [dm3] 2R_12245783_SNP [dm6]	C	G	1.106e^-4	0.63	DOWNSTREAM CR44315 INTERGENIC
2L	19830693	2L_19830693_SNP [dm3] 2L_19830693_SNP [dm6]	A	G	1.113e^-4	0.63	INTRON sick
2R	5980518	2R_5980518_SNP [dm3] 2R_10093013_SNP [dm6]	A	G	1.114e^-4	0.63	INTRON CG2269
3L	9555349	3L_9555349_SNP [dm3] 3L_9562249_SNP [dm6]	A	G	1.114e^-4	0.63	INTRON CG42673
3R	5446560	3R_5446560_DEL [dm3] 3R_9620838_DEL [dm6]	AAAACAGTGG	A	1.114e^-4	0.63	INTRON CG8312
2L	16759323	2L_16759323_SNP [dm3] 2L_16759323_SNP [dm6]	C	T	1.116e^-4	0.63	INTRON ppk17
2R	9955247	2R_9955247_SNP [dm3] 2R_14067742_SNP [dm6]	T	A	1.121e^-4	0.63	INTRON Prosap
3L	14489354	3L_14489354_SNP [dm3] 3L_14496254_SNP [dm6]	T	A	1.126e^-4	0.63	INTRON bbg	TF binding site mE1_TFBS_cad
2L	20052445	2L_20052445_SNP [dm3] 2L_20052445_SNP [dm6]	C	T	1.126e^-4	0.63	INTRON sNPF
3L	837843	3L_837843_SNP [dm3] 3L_837843_SNP [dm6]	C	T	1.128e^-4	0.63	UPSTREAM CG13887 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	4427110	2L_4427110_SNP [dm3] 2L_4427110_SNP [dm6]	A	G	1.129e^-4	0.63	INTRON CG15431
3L	14817336	3L_14817336_SNP [dm3] 3L_14824236_SNP [dm6]	G	A	1.136e^-4	0.632	INTRON CG17839
3L	12287697	3L_12287697_SNP [dm3] 3L_12294597_SNP [dm6]	C	G	1.149e^-4	0.635	INTRON CG4328
X	11121667	X_11121667_SNP [dm3] X_11227634_SNP [dm6]	T	C	1.149e^-4	0.635	INTRON CG44422
2R	8134408	2R_8134408_SNP [dm3] 2R_12246903_SNP [dm6]	G	T	1.163e^-4	0.64	EXON CR44315
2L	14713434	2L_14713434_SNP [dm3] 2L_14713434_SNP [dm6]	C	G	1.165e^-4	0.64	UPSTREAM CG34165 DOWNSTREAM CG15282 INTERGENIC
2L	15281202	2L_15281202_DEL [dm3] 2L_15281202_DEL [dm6]	CC	T	1.169e^-4	0.641	DOWNSTREAM CR45349 INTERGENIC
2L	14164758	2L_14164758_INS [dm3] 2L_14164758_INS [dm6]	T	TGTTGTT	1.178e^-4	0.642	INTRON CG43333
3L	14811233	3L_14811233_SNP [dm3] 3L_14818133_SNP [dm6]	C	T	1.183e^-4	0.642	INTRON CG17839
3R	3965610	3R_3965610_SNP [dm3] 3R_8139888_SNP [dm6]	T	C	1.184e^-4	0.642	UPSTREAM tRNA:N5:84F DOWNSTREAM tRNA:R2:84Fe & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	10343861	2R_10343861_SNP [dm3] 2R_14456356_SNP [dm6]	T	G	1.190e^-4	0.642	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	268796	2L_268796_DEL [dm3] 2L_268796_DEL [dm6]	AA	A	1.195e^-4	0.642	UPSTREAM CG3345 INTRON CG3645
X	20561606	X_20561606_SNP [dm3] X_20690579_SNP [dm6]	C	T	1.195e^-4	0.642	UPSTREAM run EXON CR45610	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	20260013	2L_20260013_DEL [dm3] 2L_20260013_DEL [dm6]	CC	C	1.195e^-4	0.642	INTERGENIC
X	3934017	X_3934017_SNP [dm3] X_4039984_SNP [dm6]	T	A	1.204e^-4	0.645	INTERGENIC
3R	24132529	3R_24132529_SNP [dm3] 3R_28306807_SNP [dm6]	A	T	1.219e^-4	0.647	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	19933467	2L_19933467_SNP [dm3] 2L_19933467_SNP [dm6]	T	A	1.222e^-4	0.647	DOWNSTREAM CR45183 INTRON sick
3R	6312640	3R_6312640_SNP [dm3] 3R_10486918_SNP [dm6]	C	T	1.226e^-4	0.647	INTERGENIC
2R	19502631	2R_19502631_SNP [dm3] 2R_23615108_SNP [dm6]	T	C	1.228e^-4	0.647	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
2L	4512888	2L_4512888_SNP [dm3] 2L_4512888_SNP [dm6]	G	A	1.231e^-4	0.647	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9580824	2L_9580824_SNP [dm3] 2L_9580824_SNP [dm6]	T	G	1.237e^-4	0.647	SYNONYMOUS_CODING gcm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	9377453	3L_9377453_SNP [dm3] 3L_9384353_SNP [dm6]	T	C	1.239e^-4	0.647	SYNONYMOUS_CODING Hsp27	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	2276201	X_2276201_SNP [dm3] X_2382168_SNP [dm6]	C	A	1.239e^-4	0.647	INTRON PsGEF	TF binding site mE1_TFBS_chinmo
2R	14326001	2R_14326001_SNP [dm3] 2R_18438496_SNP [dm6]	G	T	1.243e^-4	0.647	INTRON CG30118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13136571	X_13136571_SNP [dm3] X_13242538_SNP [dm6]	T	A	1.243e^-4	0.647	INTRON mew	TF binding site BDTNP1_TFBS_da
3R	20231859	3R_20231859_SNP [dm3] 3R_24406137_SNP [dm6]	A	C	1.249e^-4	0.648	INTRON nAChRalpha1
3R	27006630	3R_27006630_SNP [dm3] 3R_31180908_SNP [dm6]	A	T	1.251e^-4	0.648	INTRON mesh	TF binding site mE1_TFBS_cad
X	21921023	X_21921023_SNP [dm3] X_22519187_SNP [dm6]	G	A	1.270e^-4	0.65	INTRON CG17600	transposable element FlyBase
3L	13924066	3L_13924066_SNP [dm3] 3L_13930966_SNP [dm6]	G	A	1.271e^-4	0.65	NON_SYNONYMOUS_CODING Gl	TF binding site mE1_TFBS_cad
X	1925334	X_1925334_SNP [dm3] X_2031301_SNP [dm6]	C	A	1.273e^-4	0.65	INTRON Actn	TF binding site mE1_TFBS_chinmo
2L	1198461	2L_1198461_SNP [dm3] 2L_1198461_SNP [dm6]	A	T	1.273e^-4	0.65	UPSTREAM CG43348 DOWNSTREAM CG5139 INTERGENIC
2L	1198472	2L_1198472_SNP [dm3] 2L_1198472_SNP [dm6]	G	A	1.273e^-4	0.65	UTR_3_PRIME CG5139 UPSTREAM CG43348
2L	4220852	2L_4220852_SNP [dm3] 2L_4220852_SNP [dm6]	T	C	1.288e^-4	0.655	INTRON ft	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3R	13600672	3R_13600672_SNP [dm3] 3R_17774950_SNP [dm6]	C	T	1.295e^-4	0.655	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9147438	2R_9147438_SNP [dm3] 2R_13259933_SNP [dm6]	G	A	1.300e^-4	0.655	UPSTREAM CG42319 INTERGENIC
2L	19804784	2L_19804784_SNP [dm3] 2L_19804784_SNP [dm6]	A	C	1.313e^-4	0.655	INTRON sick
3L	3966395	3L_3966395_SNP [dm3] 3L_3966395_SNP [dm6]	C	T	1.318e^-4	0.655	INTERGENIC
X	17952266	X_17952266_SNP [dm3] X_18058233_SNP [dm6]	G	T	1.328e^-4	0.655	INTRON Sh
X	17935653	X_17935653_SNP [dm3] X_18041620_SNP [dm6]	G	T	1.333e^-4	0.655	INTRON Sh
2L	5867584	2L_5867584_SNP [dm3] 2L_5867584_SNP [dm6]	C	T	1.343e^-4	0.655	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21989388	3R_21989388_SNP [dm3] 3R_26163666_SNP [dm6]	A	T	1.343e^-4	0.655	INTERGENIC
X	5080122	X_5080122_SNP [dm3] X_5186089_SNP [dm6]	A	C	1.345e^-4	0.655	INTRON rg & 1 other
3R	26871231	3R_26871231_SNP [dm3] 3R_31045509_SNP [dm6]	A	C	1.345e^-4	0.655	UPSTREAM CG33920 INTRON CanA1
3L	14489373	3L_14489373_SNP [dm3] 3L_14496273_SNP [dm6]	C	T	1.346e^-4	0.655	INTRON bbg	TF binding site mE1_TFBS_cad
2L	19922511	2L_19922511_SNP [dm3] 2L_19922511_SNP [dm6]	A	G	1.360e^-4	0.655	UPSTREAM CR43827 DOWNSTREAM CR43828 INTRON sick
3L	14975649	3L_14975649_SNP [dm3] 3L_14982549_SNP [dm6]	T	A	1.361e^-4	0.655	UPSTREAM CG5114 DOWNSTREAM CG3349 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10988813	3L_10988813_SNP [dm3] 3L_10995713_SNP [dm6]	A	T	1.368e^-4	0.655	INTRON klu
3L	5694802	3L_5694802_SNP [dm3] 3L_5701702_SNP [dm6]	T	G	1.371e^-4	0.655	INTRON sif
2L	2389910	2L_2389910_SNP [dm3] 2L_2389910_SNP [dm6]	A	G	1.380e^-4	0.655	SYNONYMOUS_CODING CG43750
3R	5447210	3R_5447210_SNP [dm3] 3R_9621488_SNP [dm6]	A	T	1.383e^-4	0.655	INTRON CG8312	TF binding site mE1_TFBS_cad
3L	17798034	3L_17798034_SNP [dm3] 3L_17804934_SNP [dm6]	A	G	1.383e^-4	0.655	UTR_3_PRIME CG32187 UPSTREAM CG5589	TF binding site mE1_TFBS_cad
X	13136582	X_13136582_SNP [dm3] X_13242549_SNP [dm6]	T	A	1.384e^-4	0.655	INTRON mew	TF binding site BDTNP1_TFBS_da
2R	13505970	2R_13505970_SNP [dm3] 2R_17618465_SNP [dm6]	C	A	1.392e^-4	0.655	UPSTREAM CG44403 INTRON CG10936
3L	13557427	3L_13557427_INS [dm3] 3L_13564327_INS [dm6]	G	TA	1.396e^-4	0.655	INTRON bru-3
3L	13557430	3L_13557430_DEL [dm3] 3L_13564330_DEL [dm6]	GTTT	G	1.396e^-4	0.655	INTRON bru-3
2L	19840853	2L_19840853_SNP [dm3] 2L_19840853_SNP [dm6]	T	C	1.403e^-4	0.655	INTRON sick
3L	17798025	3L_17798025_SNP [dm3] 3L_17804925_SNP [dm6]	G	A	1.403e^-4	0.655	UTR_3_PRIME CG32187 UPSTREAM CG5589	TF binding site mE1_TFBS_cad
2R	15459606	2R_15459606_SNP [dm3] 2R_19572101_SNP [dm6]	T	G	1.407e^-4	0.655	INTRON sm
X	20215435	X_20215435_SNP [dm3] X_20344408_SNP [dm6]	G	A	1.407e^-4	0.655	INTERGENIC
X	3988585	X_3988585_SNP [dm3] X_4094552_SNP [dm6]	T	A	1.409e^-4	0.655	INTERGENIC
2L	15560377	2L_15560377_SNP [dm3] 2L_15560377_SNP [dm6]	T	A	1.411e^-4	0.655	INTRON kek3
3L	11348019	3L_11348019_SNP [dm3] 3L_11354919_SNP [dm6]	G	A	1.416e^-4	0.655	INTERGENIC
3R	25570904	3R_25570904_SNP [dm3] 3R_29745182_SNP [dm6]	G	C	1.419e^-4	0.655	UPSTREAM IntS11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6588083	2R_6588083_SNP [dm3] 2R_10700578_SNP [dm6]	G	C	1.427e^-4	0.655	INTRON stan
2L	5789717	2L_5789717_SNP [dm3] 2L_5789717_SNP [dm6]	C	T	1.431e^-4	0.655	INTRON CG9171	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13872343	3L_13872343_SNP [dm3] 3L_13879243_SNP [dm6]	G	A	1.433e^-4	0.655	INTRON dysc & 1 other
3L	22701905	3L_22701905_SNP [dm3] 3L_22708805_SNP [dm6]	C	A	1.437e^-4	0.655	INTERGENIC
3L	10988812	3L_10988812_SNP [dm3] 3L_10995712_SNP [dm6]	C	A	1.439e^-4	0.655	INTRON klu
3R	20231634	3R_20231634_SNP [dm3] 3R_24405912_SNP [dm6]	G	A	1.445e^-4	0.655	INTRON nAChRalpha1
X	3599377	X_3599377_SNP [dm3] X_3705344_SNP [dm6]	G	T	1.448e^-4	0.655	UTR_3_PRIME Rala
3R	25571021	3R_25571021_SNP [dm3] 3R_29745299_SNP [dm6]	G	A	1.449e^-4	0.655	UPSTREAM IntS11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	424444	3L_424444_SNP [dm3] 3L_424444_SNP [dm6]	T	C	1.449e^-4	0.655	INTERGENIC
2L	19840678	2L_19840678_SNP [dm3] 2L_19840678_SNP [dm6]	A	G	1.450e^-4	0.655	INTRON sick
2R	8372456	2R_8372456_SNP [dm3] 2R_12484951_SNP [dm6]	C	T	1.451e^-4	0.655	INTRON Dh44-R2
3L	9661315	3L_9661315_SNP [dm3] 3L_9668215_SNP [dm6]	A	G	1.453e^-4	0.655	INTRON fry	TF binding site mE1_TFBS_cad
X	21063578	X_21063578_SNP [dm3] X_21192551_SNP [dm6]	G	A	1.453e^-4	0.655	UPSTREAM CG14579 INTERGENIC
2R	17894354	2R_17894354_SNP [dm3] 2R_22006849_SNP [dm6]	A	G	1.453e^-4	0.655	INTRON CG34370
2L	19802424	2L_19802424_SNP [dm3] 2L_19802424_SNP [dm6]	A	T	1.457e^-4	0.655	INTRON sick
3R	11322539	3R_11322539_DEL [dm3] 3R_15496817_DEL [dm6]	TC	T	1.457e^-4	0.655	INTERGENIC
3R	7278942	3R_7278942_SNP [dm3] 3R_11453220_SNP [dm6]	A	G	1.459e^-4	0.655	SYNONYMOUS_CODING PGRP-LB INTRON CG17230	TF binding site mE1_TFBS_chinmo
2R	14558798	2R_14558798_SNP [dm3] 2R_18671293_SNP [dm6]	T	G	1.462e^-4	0.655	INTRON edl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2537851	3L_2537851_SNP [dm3] 3L_2537851_SNP [dm6]	G	T	1.463e^-4	0.655	INTRON Spn
2R	11506455	2R_11506455_INS [dm3] 2R_15618950_INS [dm6]	T	TTA	1.464e^-4	0.655	INTRON CG42524
3R	21989378	3R_21989378_SNP [dm3] 3R_26163656_SNP [dm6]	G	A	1.475e^-4	0.655	INTERGENIC
3R	21989380	3R_21989380_SNP [dm3] 3R_26163658_SNP [dm6]	T	C	1.475e^-4	0.655	INTERGENIC
3L	8518986	3L_8518986_SNP [dm3] 3L_8525886_SNP [dm6]	A	C	1.477e^-4	0.655	INTRON foi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	5978477	2R_5978477_SNP [dm3] 2R_10090972_SNP [dm6]	A	G	1.485e^-4	0.655	INTRON CG2269
3L	11168307	3L_11168307_SNP [dm3] 3L_11175207_SNP [dm6]	T	A	1.496e^-4	0.655	INTRON CG14142
X	5228773	X_5228773_SNP [dm3] X_5334740_SNP [dm6]	C	T	1.499e^-4	0.655	DOWNSTREAM CanB INTERGENIC
X	3934025	X_3934025_SNP [dm3] X_4039992_SNP [dm6]	C	A	1.501e^-4	0.655	INTERGENIC
2L	17292567	2L_17292567_INS [dm3] 2L_17292567_INS [dm6]	A	ACCA	1.512e^-4	0.655	UPSTREAM CG6380 INTERGENIC
2L	17385947	2L_17385947_SNP [dm3] 2L_17385947_SNP [dm6]	A	C	1.513e^-4	0.655	UPSTREAM CLIP-190 INTRON CLIP-190	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22858373	3R_22858373_SNP [dm3] 3R_27032651_SNP [dm6]	T	G	1.523e^-4	0.655	INTRON RYa-R	TF binding site mE1_TFBS_HSA
2R	20789054	2R_20789054_SNP [dm3] 2R_24901531_SNP [dm6]	C	T	1.540e^-4	0.655	UPSTREAM Tpc2 INTRON NaCP60E	TF binding site mE1_TFBS_HSA
3R	13483941	3R_13483941_SNP [dm3] 3R_17658219_SNP [dm6]	T	A	1.541e^-4	0.655	DOWNSTREAM tRNA:CR31575 INTRON CG14322
2R	14184655	2R_14184655_SNP [dm3] 2R_18297150_SNP [dm6]	G	A	1.541e^-4	0.655	UPSTREAM CG18539 DOWNSTREAM CG18537 INTRON sbb & 1 other
3R	25570881	3R_25570881_SNP [dm3] 3R_29745159_SNP [dm6]	A	T	1.546e^-4	0.655	UPSTREAM IntS11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19923406	2L_19923406_SNP [dm3] 2L_19923406_SNP [dm6]	G	A	1.548e^-4	0.655	INTRON sick EXON CR43827
2L	19925277	2L_19925277_SNP [dm3] 2L_19925277_SNP [dm6]	T	C	1.548e^-4	0.655	INTRON sick	TF binding site mE1_TFBS_chinmo
2L	5502565	2L_5502565_SNP [dm3] 2L_5502565_SNP [dm6]	T	A	1.552e^-4	0.655	INTERGENIC	TF binding site mE1_TFBS_cad
3R	5448651	3R_5448651_SNP [dm3] 3R_9622929_SNP [dm6]	A	T	1.553e^-4	0.655	UPSTREAM CG8312 INTRON CG8312
3L	15483205	3L_15483205_SNP [dm3] 3L_15490105_SNP [dm6]	G	A	1.554e^-4	0.655	INTERGENIC
3R	25587372	3R_25587372_SNP [dm3] 3R_29761650_SNP [dm6]	T	A	1.555e^-4	0.655	INTERGENIC
2R	15895215	2R_15895215_SNP [dm3] 2R_20007710_SNP [dm6]	T	C	1.561e^-4	0.655	DOWNSTREAM CR44628 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	21921535	2L_21921535_SNP [dm3] 2L_21921535_SNP [dm6]	T	C	1.561e^-4	0.655	INTERGENIC
2R	3665693	2R_3665693_SNP [dm3] 2R_7778188_SNP [dm6]	A	T	1.562e^-4	0.655	INTRON CG30497 & 1 other
2R	3665721	2R_3665721_SNP [dm3] 2R_7778216_SNP [dm6]	C	T	1.564e^-4	0.655	INTRON CG30497 & 1 other
2L	17302565	2L_17302565_SNP [dm3] 2L_17302565_SNP [dm6]	C	A	1.570e^-4	0.655	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	16989113	3R_16989113_SNP [dm3] 3R_21163391_SNP [dm6]	A	G	1.573e^-4	0.655	UPSTREAM CG5810 INTRON SNF4Agamma
2L	15960200	2L_15960200_SNP [dm3] 2L_15960200_SNP [dm6]	C	G	1.577e^-4	0.655	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
3R	13570405	3R_13570405_SNP [dm3] 3R_17744683_SNP [dm6]	A	C	1.579e^-4	0.655	INTRON TyrRII
3R	5129982	3R_5129982_SNP [dm3] 3R_9304260_SNP [dm6]	C	G	1.580e^-4	0.655	INTRON CG8861
2R	8366265	2R_8366265_SNP [dm3] 2R_12478760_SNP [dm6]	A	C	1.580e^-4	0.655	INTRON Dh44-R2
2L	14702724	2L_14702724_SNP [dm3] 2L_14702724_SNP [dm6]	C	G	1.583e^-4	0.655	INTERGENIC
2L	19830668	2L_19830668_SNP [dm3] 2L_19830668_SNP [dm6]	C	G	1.586e^-4	0.655	INTRON sick
2L	15090500	2L_15090500_SNP [dm3] 2L_15090500_SNP [dm6]	T	A	1.591e^-4	0.655	INTRON CG15270
3R	21344585	3R_21344585_SNP [dm3] 3R_25518863_SNP [dm6]	G	T	1.592e^-4	0.655	INTRON msi	TF binding site mE1_TFBS_Trl
2R	17691142	2R_17691142_SNP [dm3] 2R_21803637_SNP [dm6]	C	T	1.593e^-4	0.655	EXON CR9284
2L	8507679	2L_8507679_SNP [dm3] 2L_8507679_SNP [dm6]	T	A	1.599e^-4	0.655	UPSTREAM Dh31 INTERGENIC
X	17951830	X_17951830_SNP [dm3] X_18057797_SNP [dm6]	A	C	1.600e^-4	0.655	INTRON Sh
X	20215452	X_20215452_INS [dm3] X_20344425_INS [dm6]	AC	TTATGCCG	1.600e^-4	0.655	INTERGENIC
2L	4427168	2L_4427168_SNP [dm3] 2L_4427168_SNP [dm6]	C	T	1.607e^-4	0.655	INTRON CG15431
X	16344120	X_16344120_SNP [dm3] X_16450087_SNP [dm6]	G	A	1.607e^-4	0.655	SYNONYMOUS_CODING Rbp2	TF binding site BDTNP1_TFBS_dl
3L	6688251	3L_6688251_INS [dm3] 3L_6695151_INS [dm6]	G	GACGGCTTTGCCG...	1.610e^-4	0.655	INTRON SP1173
3R	24413959	3R_24413959_DEL [dm3] 3R_28588237_DEL [dm6]	ACAAA	A	1.617e^-4	0.655	DOWNSTREAM MRE23 EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4362491	3R_4362491_SNP [dm3] 3R_8536769_SNP [dm6]	A	G	1.617e^-4	0.655	INTERGENIC
2L	3986891	2L_3986891_SNP [dm3] 2L_3986891_SNP [dm6]	A	T	1.619e^-4	0.655	INTRON fred
X	14523087	X_14523087_SNP [dm3] X_14629054_SNP [dm6]	G	A	1.620e^-4	0.655	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15503124	3R_15503124_SNP [dm3] 3R_19677402_SNP [dm6]	A	T	1.630e^-4	0.655	INTRON Naam
2L	21775574	2L_21775574_INS [dm3] 2L_21775574_INS [dm6]	A	ATC	1.630e^-4	0.655	INTRON CG31612	TF binding site mE1_TFBS_HSA transposable element FlyBase
2L	10482563	2L_10482563_SNP [dm3] 2L_10482563_SNP [dm6]	C	A	1.631e^-4	0.655	NON_SYNONYMOUS_CODING RluA-2 UTR_3_PRIME RluA-2 UPSTREAM Grip75	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	15874982	2R_15874982_SNP [dm3] 2R_19987477_SNP [dm6]	C	T	1.637e^-4	0.655	INTERGENIC
2L	2301138	2L_2301138_INS [dm3] 2L_2301138_INS [dm6]	A	AAACA	1.645e^-4	0.655	DOWNSTREAM CG31949 INTERGENIC
2R	11576600	2R_11576600_SNP [dm3] 2R_15689095_SNP [dm6]	G	T	1.647e^-4	0.655	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	413923	3L_413923_SNP [dm3] 3L_413923_SNP [dm6]	A	G	1.649e^-4	0.655	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	19930978	2L_19930978_SNP [dm3] 2L_19930978_SNP [dm6]	G	T	1.650e^-4	0.655	INTRON sick
2L	638038	2L_638038_SNP [dm3] 2L_638038_SNP [dm6]	G	C	1.653e^-4	0.655	INTERGENIC
2L	16135147	2L_16135147_SNP [dm3] 2L_16135147_SNP [dm6]	G	A	1.654e^-4	0.655	DOWNSTREAM CR44871 & 1 other INTRON CG34168
2L	19562546	2L_19562546_SNP [dm3] 2L_19562546_SNP [dm6]	G	A	1.656e^-4	0.655	INTRON Tep5
X	20215420	X_20215420_SNP [dm3] X_20344393_SNP [dm6]	A	G	1.664e^-4	0.655	INTERGENIC
2L	9105472	2L_9105472_SNP [dm3] 2L_9105472_SNP [dm6]	A	T	1.665e^-4	0.655	INTERGENIC
2R	9356682	2R_9356682_SNP [dm3] 2R_13469177_SNP [dm6]	A	C	1.669e^-4	0.655	INTRON arr	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu
3L	14817946	3L_14817946_SNP [dm3] 3L_14824846_SNP [dm6]	A	G	1.675e^-4	0.655	INTRON CG17839
X	17952247	X_17952247_SNP [dm3] X_18058214_SNP [dm6]	A	C	1.676e^-4	0.655	INTRON Sh
X	5702342	X_5702342_SNP [dm3] X_5808309_SNP [dm6]	G	A	1.676e^-4	0.655	UPSTREAM Prosbeta2R1 INTERGENIC
3L	12792249	3L_12792249_SNP [dm3] 3L_12799149_SNP [dm6]	C	G	1.692e^-4	0.655	INTRON Atg1
2L	17302534	2L_17302534_SNP [dm3] 2L_17302534_SNP [dm6]	A	G	1.692e^-4	0.655	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	24362223	3R_24362223_SNP [dm3] 3R_28536501_SNP [dm6]	C	T	1.698e^-4	0.655	INTRON Ppn
2R	5980533	2R_5980533_DEL [dm3] 2R_10093028_DEL [dm6]	CACAAATTAATGGC...	C	1.699e^-4	0.655	INTRON CG2269
X	13135870	X_13135870_SNP [dm3] X_13241837_SNP [dm6]	G	A	1.707e^-4	0.655	INTRON mew
2L	19562536	2L_19562536_SNP [dm3] 2L_19562536_SNP [dm6]	C	T	1.711e^-4	0.655	SPLICE_SITE_REGION Tep5 INTRON Tep5
X	13026679	X_13026679_SNP [dm3] X_13132646_SNP [dm6]	T	G	1.714e^-4	0.655	INTRON MFS10 & 1 other
2L	7025296	2L_7025296_SNP [dm3] 2L_7025296_SNP [dm6]	C	A	1.714e^-4	0.655	NON_SYNONYMOUS_CODING CG31908	TF binding site mE1_TFBS_cad
X	10569521	X_10569521_SNP [dm3] X_10675488_SNP [dm6]	T	A	1.715e^-4	0.655	INTRON X11Lbeta
2L	13881630	2L_13881630_SNP [dm3] 2L_13881630_SNP [dm6]	A	G	1.719e^-4	0.655	INTRON CenG1A
3L	1564487	3L_1564487_SNP [dm3] 3L_1564487_SNP [dm6]	C	A	1.720e^-4	0.655	UPSTREAM CG12003 INTRON CG7879
3R	25571996	3R_25571996_SNP [dm3] 3R_29746274_SNP [dm6]	G	C	1.733e^-4	0.655	SYNONYMOUS_CODING IntS11	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6588137	2R_6588137_SNP [dm3] 2R_10700632_SNP [dm6]	C	T	1.734e^-4	0.655	INTRON stan
3R	8485757	3R_8485757_SNP [dm3] 3R_12660035_SNP [dm6]	C	T	1.735e^-4	0.655	INTRON CG6225	TF binding site mE1_TFBS_cad
3L	15483419	3L_15483419_SNP [dm3] 3L_15490319_SNP [dm6]	T	A	1.741e^-4	0.655	INTERGENIC
2R	2935425	2R_2935425_SNP [dm3] 2R_7047920_SNP [dm6]	T	A	1.743e^-4	0.655	INTRON Tsp42El
3L	2647828	3L_2647828_SNP [dm3] 3L_2647828_SNP [dm6]	A	G	1.750e^-4	0.655	UPSTREAM CG1246 DOWNSTREAM CG1143 INTERGENIC
2R	14326192	2R_14326192_SNP [dm3] 2R_18438687_SNP [dm6]	G	A	1.751e^-4	0.655	INTRON CG30118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16237157	2L_16237157_SNP [dm3] 2L_16237157_SNP [dm6]	A	G	1.751e^-4	0.655	SYNONYMOUS_CODING CG42817
3L	5694805	3L_5694805_SNP [dm3] 3L_5701705_SNP [dm6]	G	A	1.752e^-4	0.655	INTRON sif
3R	25672069	3R_25672069_SNP [dm3] 3R_29846347_SNP [dm6]	T	A	1.756e^-4	0.655	INTRON Cad99C
3L	15606962	3L_15606962_SNP [dm3] 3L_15613862_SNP [dm6]	G	T	1.757e^-4	0.655	SYNONYMOUS_CODING comm3
3L	7480613	3L_7480613_SNP [dm3] 3L_7487513_SNP [dm6]	A	G	1.764e^-4	0.655	INTRON mthl6
3L	2645491	3L_2645491_SNP [dm3] 3L_2645491_SNP [dm6]	A	T	1.764e^-4	0.655	INTRON CG1143
3R	15863244	3R_15863244_SNP [dm3] 3R_20037522_SNP [dm6]	C	T	1.764e^-4	0.655	UTR_3_PRIME CG17193
3L	14919578	3L_14919578_SNP [dm3] 3L_14926478_SNP [dm6]	A	G	1.779e^-4	0.658	UTR_5_PRIME DCX-EMAP INTRON DCX-EMAP
X	17935389	X_17935389_SNP [dm3] X_18041356_SNP [dm6]	A	G	1.794e^-4	0.658	INTRON Sh
2R	11849590	2R_11849590_SNP [dm3] 2R_15962085_SNP [dm6]	T	G	1.798e^-4	0.658	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19505523	2R_19505523_SNP [dm3] 2R_23618000_SNP [dm6]	G	T	1.807e^-4	0.658	INTERGENIC
2L	13875526	2L_13875526_SNP [dm3] 2L_13875526_SNP [dm6]	C	T	1.808e^-4	0.658	INTRON CenG1A
3L	11841320	3L_11841320_SNP [dm3] 3L_11848220_SNP [dm6]	G	T	1.815e^-4	0.658	UPSTREAM CG12521 INTERGENIC	transposable element FlyBase
2L	8448676	2L_8448676_SNP [dm3] 2L_8448676_SNP [dm6]	G	T	1.819e^-4	0.658	SYNONYMOUS_CODING U26
2L	19903340	2L_19903340_SNP [dm3] 2L_19903340_SNP [dm6]	C	G	1.820e^-4	0.658	INTRON sick
3L	15479718	3L_15479718_SNP [dm3] 3L_15486618_SNP [dm6]	G	T	1.822e^-4	0.658	INTERGENIC
X	19932654	X_19932654_SNP [dm3] X_20038621_SNP [dm6]	A	T	1.829e^-4	0.658	INTRON Dop2R
2R	4952874	2R_4952874_SNP [dm3] 2R_9065369_SNP [dm6]	G	A	1.830e^-4	0.658	INTRON ana	regulatory region REDfly_CRMs
2L	1381522	2L_1381522_SNP [dm3] 2L_1381522_SNP [dm6]	T	C	1.830e^-4	0.658	SYNONYMOUS_CODING lea UTR_3_PRIME lea UPSTREAM CR44898 EXON CR44897	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	13310278	3L_13310278_SNP [dm3] 3L_13317178_SNP [dm6]	C	G	1.839e^-4	0.658	INTERGENIC
2L	1234895	2L_1234895_SNP [dm3] 2L_1234895_SNP [dm6]	A	G	1.839e^-4	0.658	INTERGENIC
X	1930114	X_1930114_SNP [dm3] X_2036081_SNP [dm6]	T	A	1.847e^-4	0.658	INTRON Actn	TF binding site BDTNP1_TFBS_dl
2L	9105311	2L_9105311_SNP [dm3] 2L_9105311_SNP [dm6]	G	T	1.850e^-4	0.658	INTERGENIC
2R	11805811	2R_11805811_INS [dm3] 2R_15918306_INS [dm6]	T	TATAAAGAGT	1.854e^-4	0.658	INTRON sli	TF binding site mE1_TFBS_cad
X	16690567	X_16690567_SNP [dm3] X_16796534_SNP [dm6]	T	G	1.858e^-4	0.658	UTR_3_PRIME CG4768 DOWNSTREAM CG9132 & 1 other
X	10569471	X_10569471_SNP [dm3] X_10675438_SNP [dm6]	A	C	1.860e^-4	0.658	INTRON X11Lbeta
3L	22883797	3L_22883797_SNP [dm3] 3L_22890697_SNP [dm6]	A	G	1.861e^-4	0.658	INTRON slif	transposable element FlyBase
2L	19923472	2L_19923472_SNP [dm3] 2L_19923472_SNP [dm6]	A	T	1.864e^-4	0.658	INTRON sick EXON CR43827
2L	19826798	2L_19826798_SNP [dm3] 2L_19826798_SNP [dm6]	G	C	1.876e^-4	0.658	UTR_5_PRIME sick UPSTREAM sick INTRON sick
2R	19512434	2R_19512434_SNP [dm3] 2R_23624911_SNP [dm6]	A	C	1.882e^-4	0.658	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9487588	2L_9487588_SNP [dm3] 2L_9487588_SNP [dm6]	A	G	1.891e^-4	0.658	INTERGENIC
2L	22306203	2L_22306203_SNP [dm3] 2L_22306203_SNP [dm6]	T	C	1.891e^-4	0.658	INTERGENIC
3L	4997593	3L_4997593_SNP [dm3] 3L_4997593_SNP [dm6]	T	C	1.893e^-4	0.658	UPSTREAM CG32232 INTRON Con
3L	16439332	3L_16439332_SNP [dm3] 3L_16446232_SNP [dm6]	A	G	1.899e^-4	0.658	INTRON CG33158 & 1 other
3R	22858347	3R_22858347_SNP [dm3] 3R_27032625_SNP [dm6]	T	G	1.899e^-4	0.658	INTRON RYa-R	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	19924960	2L_19924960_SNP [dm3] 2L_19924960_SNP [dm6]	A	G	1.907e^-4	0.658	INTRON sick
2L	8957160	2L_8957160_SNP [dm3] 2L_8957160_SNP [dm6]	C	A	1.907e^-4	0.658	INTRON CG31886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	4715334	3L_4715334_SNP [dm3] 3L_4715334_SNP [dm6]	T	G	1.908e^-4	0.658	INTRON RhoGEF64C
2L	19898607	2L_19898607_SNP [dm3] 2L_19898607_SNP [dm6]	T	A	1.911e^-4	0.658	INTRON sick
2L	19802933	2L_19802933_SNP [dm3] 2L_19802933_SNP [dm6]	G	A	1.914e^-4	0.658	INTRON sick
3R	18088174	3R_18088174_SNP [dm3] 3R_22262452_SNP [dm6]	T	A	1.915e^-4	0.658	INTRON SKIP
3R	18088205	3R_18088205_SNP [dm3] 3R_22262483_SNP [dm6]	C	G	1.915e^-4	0.658	INTRON SKIP
2R	16315559	2R_16315559_SNP [dm3] 2R_20428054_SNP [dm6]	C	A	1.916e^-4	0.658	INTRON CG12484
2R	17268235	2R_17268235_SNP [dm3] 2R_21380730_SNP [dm6]	G	A	1.923e^-4	0.658	INTERGENIC	TF binding site mE1_TFBS_sens
2L	19830653	2L_19830653_SNP [dm3] 2L_19830653_SNP [dm6]	C	G	1.928e^-4	0.658	INTRON sick
2L	9104742	2L_9104742_DEL [dm3] 2L_9104742_DEL [dm6]	CTA	C	1.931e^-4	0.658	INTERGENIC
3R	2948277	3R_2948277_SNP [dm3] 3R_7122555_SNP [dm6]	G	A	1.933e^-4	0.658	INTRON Alh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9105664	2L_9105664_SNP [dm3] 2L_9105664_SNP [dm6]	G	A	1.934e^-4	0.658	INTERGENIC
2L	7297033	2L_7297033_SNP [dm3] 2L_7297033_SNP [dm6]	A	T	1.938e^-4	0.658	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	3437649	2L_3437649_SNP [dm3] 2L_3437649_SNP [dm6]	A	T	1.939e^-4	0.658	INTERGENIC
3R	25570980	3R_25570980_SNP [dm3] 3R_29745258_SNP [dm6]	T	A	1.942e^-4	0.658	UPSTREAM IntS11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	11576437	2R_11576437_SNP [dm3] 2R_15688932_SNP [dm6]	T	C	1.942e^-4	0.658	NON_SYNONYMOUS_CODING Cep89 UPSTREAM CG30090	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25574764	3R_25574764_SNP [dm3] 3R_29749042_SNP [dm6]	A	G	1.946e^-4	0.658	START_GAINED ATPsyn-gamma UTR_5_PRIME ATPsyn-gamma UPSTREAM yata & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	16135142	2L_16135142_SNP [dm3] 2L_16135142_SNP [dm6]	C	T	1.958e^-4	0.658	DOWNSTREAM CR44871 & 1 other INTRON CG34168
3L	10722068	3L_10722068_SNP [dm3] 3L_10728968_SNP [dm6]	T	C	1.964e^-4	0.658	INTERGENIC
2R	15100187	2R_15100187_SNP [dm3] 2R_19212682_SNP [dm6]	C	T	1.965e^-4	0.658	INTRON hppy	TF binding site mE1_TFBS_inv
3R	13682419	3R_13682419_SNP [dm3] 3R_17856697_SNP [dm6]	T	C	1.965e^-4	0.658	INTRON tinc
3R	13682437	3R_13682437_SNP [dm3] 3R_17856715_SNP [dm6]	G	C	1.965e^-4	0.658	INTRON tinc
3L	22930118	3L_22930118_SNP [dm3] 3L_22937018_SNP [dm6]	A	T	1.969e^-4	0.658	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19840675	2L_19840675_SNP [dm3] 2L_19840675_SNP [dm6]	A	G	1.980e^-4	0.658	INTRON sick
3L	3719980	3L_3719980_SNP [dm3] 3L_3719980_SNP [dm6]	G	A	1.980e^-4	0.658	INTRON CG32264
2L	19782054	2L_19782054_SNP [dm3] 2L_19782054_SNP [dm6]	C	T	1.984e^-4	0.658	SYNONYMOUS_CODING CdGAPr	TF binding site mE1_TFBS_cad
2L	16135106	2L_16135106_DEL [dm3] 2L_16135106_DEL [dm6]	ATGAAA	A	1.986e^-4	0.658	DOWNSTREAM CR44871 & 1 other INTRON CG34168
3L	7560753	3L_7560753_SNP [dm3] 3L_7567653_SNP [dm6]	C	T	1.987e^-4	0.658	SYNONYMOUS_CODING frac
3R	13106773	3R_13106773_SNP [dm3] 3R_17281051_SNP [dm6]	T	C	1.989e^-4	0.658	INTERGENIC
3R	8485754	3R_8485754_SNP [dm3] 3R_12660032_SNP [dm6]	T	G	1.995e^-4	0.658	INTRON CG6225	TF binding site mE1_TFBS_cad
2L	1239660	2L_1239660_SNP [dm3] 2L_1239660_SNP [dm6]	G	A	2.005e^-4	0.658	UPSTREAM CG5397 INTERGENIC
3R	13683156	3R_13683156_SNP [dm3] 3R_17857434_SNP [dm6]	G	A	2.005e^-4	0.658	INTRON tinc
3L	5372382	3L_5372382_SNP [dm3] 3L_5379282_SNP [dm6]	G	A	2.006e^-4	0.658	SYNONYMOUS_CODING Ir64a DOWNSTREAM CR45743
3L	14974486	3L_14974486_SNP [dm3] 3L_14981386_SNP [dm6]	A	G	2.009e^-4	0.658	SYNONYMOUS_CODING CG3349
3L	443138	3L_443138_SNP [dm3] 3L_443138_SNP [dm6]	C	T	2.009e^-4	0.658	NON_SYNONYMOUS_CODING klar INTRON klar	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
X	14325056	X_14325056_SNP [dm3] X_14431023_SNP [dm6]	T	C	2.010e^-4	0.658	INTRON dpr8
2L	8507658	2L_8507658_SNP [dm3] 2L_8507658_SNP [dm6]	G	C	2.011e^-4	0.658	UPSTREAM Dh31 INTERGENIC
3R	5137887	3R_5137887_SNP [dm3] 3R_9312165_SNP [dm6]	A	G	2.014e^-4	0.658	INTRON CG8861
3R	25574765	3R_25574765_SNP [dm3] 3R_29749043_SNP [dm6]	T	A	2.014e^-4	0.658	UTR_5_PRIME ATPsyn-gamma UPSTREAM yata & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	19835275	2L_19835275_SNP [dm3] 2L_19835275_SNP [dm6]	C	T	2.019e^-4	0.658	INTRON sick
2L	16135128	2L_16135128_SNP [dm3] 2L_16135128_SNP [dm6]	T	A	2.019e^-4	0.658	DOWNSTREAM CR44871 & 1 other INTRON CG34168
X	13125436	X_13125436_DEL [dm3] X_13231403_DEL [dm6]	ACA	A	2.036e^-4	0.661	INTRON mew	TF binding site BDTNP1_TFBS_dl
3R	5448643	3R_5448643_SNP [dm3] 3R_9622921_SNP [dm6]	C	T	2.039e^-4	0.661	UPSTREAM CG8312 INTRON CG8312
2L	10565818	2L_10565818_SNP [dm3] 2L_10565818_SNP [dm6]	A	T	2.045e^-4	0.661	INTRON Trim9
2L	17302476	2L_17302476_SNP [dm3] 2L_17302476_SNP [dm6]	A	C	2.048e^-4	0.661	INTERGENIC	TF binding site mE1_TFBS_sbb
2R	11637322	2R_11637322_SNP [dm3] 2R_15749817_SNP [dm6]	G	T	2.052e^-4	0.661	INTRON CG30089
X	13018717	X_13018717_SNP [dm3] X_13124684_SNP [dm6]	C	T	2.055e^-4	0.661	INTRON CG32638
2L	19925142	2L_19925142_SNP [dm3] 2L_19925142_SNP [dm6]	C	A	2.055e^-4	0.661	INTRON sick
3L	4733470	3L_4733470_SNP [dm3] 3L_4733470_SNP [dm6]	T	C	2.057e^-4	0.661	INTRON RhoGEF64C
3R	13600157	3R_13600157_SNP [dm3] 3R_17774435_SNP [dm6]	T	G	2.059e^-4	0.661	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
2L	8507668	2L_8507668_SNP [dm3] 2L_8507668_SNP [dm6]	G	C	2.068e^-4	0.661	UPSTREAM Dh31 INTERGENIC
3L	7461504	3L_7461504_SNP [dm3] 3L_7468404_SNP [dm6]	A	C	2.070e^-4	0.661	UTR_3_PRIME CG42660 & 2 others
3L	837739	3L_837739_INS [dm3] 3L_837739_INS [dm6]	T	TA	2.076e^-4	0.661	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	19824491	2L_19824491_SNP [dm3] 2L_19824491_SNP [dm6]	C	T	2.081e^-4	0.661	INTRON sick
3L	712066	3L_712066_SNP [dm3] 3L_712066_SNP [dm6]	G	A	2.083e^-4	0.661	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	19924020	2L_19924020_DEL [dm3] 2L_19924020_DEL [dm6]	CTC	C	2.086e^-4	0.661	DOWNSTREAM CR43827 INTRON sick
3L	4737909	3L_4737909_SNP [dm3] 3L_4737909_SNP [dm6]	G	A	2.097e^-4	0.661	INTRON RhoGEF64C
3L	17891665	3L_17891665_SNP [dm3] 3L_17898565_SNP [dm6]	G	A	2.109e^-4	0.661	DOWNSTREAM Prestin INTERGENIC
2R	18918736	2R_18918736_SNP [dm3] 2R_23031213_SNP [dm6]	T	C	2.115e^-4	0.661	INTRON twi & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7156753	3L_7156753_SNP [dm3] 3L_7163653_SNP [dm6]	G	A	2.118e^-4	0.661	INTRON Dscam2
3L	7156769	3L_7156769_SNP [dm3] 3L_7163669_SNP [dm6]	G	A	2.118e^-4	0.661	INTRON Dscam2
3L	14555445	3L_14555445_SNP [dm3] 3L_14562345_SNP [dm6]	A	T	2.123e^-4	0.661	INTRON CG34039	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
2R	20783402	2R_20783402_SNP [dm3] 2R_24895879_SNP [dm6]	T	C	2.124e^-4	0.661	INTRON NaCP60E	TF binding site mE1_TFBS_chinmo
3R	3966140	3R_3966140_SNP [dm3] 3R_8140418_SNP [dm6]	A	C	2.125e^-4	0.661	UPSTREAM tRNA:N5:84F & 2 others DOWNSTREAM tRNA:R2:84Fc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	18378607	X_18378607_SNP [dm3] X_18484574_SNP [dm6]	A	T	2.125e^-4	0.661	UTR_3_PRIME psh UPSTREAM Hayan
2L	19800177	2L_19800177_SNP [dm3] 2L_19800177_SNP [dm6]	C	T	2.128e^-4	0.661	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15459576	2R_15459576_SNP [dm3] 2R_19572071_SNP [dm6]	A	G	2.128e^-4	0.661	INTRON sm
2L	19830651	2L_19830651_SNP [dm3] 2L_19830651_SNP [dm6]	T	C	2.138e^-4	0.661	INTRON sick
2R	19505508	2R_19505508_SNP [dm3] 2R_23617985_SNP [dm6]	T	G	2.138e^-4	0.661	INTERGENIC
2R	12550294	2R_12550294_DEL [dm3] 2R_16662789_DEL [dm6]	TT	T	2.139e^-4	0.661	INTRON Picot
3R	2949856	3R_2949856_SNP [dm3] 3R_7124134_SNP [dm6]	G	T	2.140e^-4	0.661	UTR_5_PRIME Alh UPSTREAM CG10098 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	7705455	3L_7705455_SNP [dm3] 3L_7712355_SNP [dm6]	G	A	2.143e^-4	0.661	INTRON CG32373 & 1 other
2L	19803822	2L_19803822_SNP [dm3] 2L_19803822_SNP [dm6]	G	A	2.151e^-4	0.661	INTRON sick
X	7561480	X_7561480_SNP [dm3] X_7667447_SNP [dm6]	A	T	2.158e^-4	0.661	INTRON ct
3L	11841580	3L_11841580_SNP [dm3] 3L_11848480_SNP [dm6]	T	C	2.171e^-4	0.661	UPSTREAM CG12521 INTERGENIC
2R	254918	2R_254918_SNP [dm3] 2R_4367413_SNP [dm6]	C	T	2.177e^-4	0.661	INTRON Gprk1
3L	21144989	3L_21144989_SNP [dm3] 3L_21151889_SNP [dm6]	C	A	2.185e^-4	0.661	INTRON Ac78C
3R	965185	3R_965185_SNP [dm3] 3R_5139463_SNP [dm6]	G	T	2.189e^-4	0.661	UPSTREAM CG12589 INTERGENIC
2L	16135119	2L_16135119_SNP [dm3] 2L_16135119_SNP [dm6]	A	G	2.192e^-4	0.661	DOWNSTREAM CR44871 & 1 other INTRON CG34168
2R	13212237	2R_13212237_SNP [dm3] 2R_17324732_SNP [dm6]	A	G	2.196e^-4	0.661	INTRON mbl
3L	16202346	3L_16202346_SNP [dm3] 3L_16209246_SNP [dm6]	C	T	2.199e^-4	0.661	INTERGENIC	TF binding site mE1_TFBS_cad
3R	25825076	3R_25825076_SNP [dm3] 3R_29999354_SNP [dm6]	C	T	2.200e^-4	0.661	SYNONYMOUS_CODING CG11504 UPSTREAM CG34298	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11813744	2R_11813744_SNP [dm3] 2R_15926239_SNP [dm6]	C	T	2.201e^-4	0.661	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad
2L	9104684	2L_9104684_SNP [dm3] 2L_9104684_SNP [dm6]	A	T	2.215e^-4	0.661	INTERGENIC
2L	10474426	2L_10474426_SNP [dm3] 2L_10474426_SNP [dm6]	G	T	2.222e^-4	0.661	UPSTREAM RluA-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11922610	3L_11922610_SNP [dm3] 3L_11929510_SNP [dm6]	T	C	2.222e^-4	0.661	INTRON CG44837 & 1 other
3R	25574890	3R_25574890_SNP [dm3] 3R_29749168_SNP [dm6]	A	T	2.223e^-4	0.661	UPSTREAM yata & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	8429017	3R_8429017_SNP [dm3] 3R_12603295_SNP [dm6]	A	T	2.223e^-4	0.661	INTERGENIC
X	21923107	X_21923107_SNP [dm3] X_22521271_SNP [dm6]	A	C	2.241e^-4	0.661	INTRON CG17600
3L	11180528	3L_11180528_SNP [dm3] 3L_11187428_SNP [dm6]	C	T	2.245e^-4	0.661	INTRON GlcAT-P
3L	11922558	3L_11922558_SNP [dm3] 3L_11929458_SNP [dm6]	G	C	2.253e^-4	0.661	INTRON CG44837 & 1 other
2L	19894841	2L_19894841_SNP [dm3] 2L_19894841_SNP [dm6]	C	G	2.256e^-4	0.661	INTRON sick	silencer mE1_HDAC_PRE
X	18659700	X_18659700_SNP [dm3] X_18765667_SNP [dm6]	A	T	2.265e^-4	0.661	INTRON CCKLR-17D3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14305173	X_14305173_SNP [dm3] X_14411140_SNP [dm6]	C	A	2.268e^-4	0.661	INTRON dpr8
X	5661593	X_5661593_SNP [dm3] X_5767560_SNP [dm6]	C	T	2.272e^-4	0.661	SYNONYMOUS_CODING CG3097 INTRON CG42699	TF binding site mE1_TFBS_sens
3L	11927532	3L_11927532_SNP [dm3] 3L_11934432_SNP [dm6]	G	T	2.280e^-4	0.661	SYNONYMOUS_CODING byn INTRON CG44837	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5663929	X_5663929_INS [dm3] X_5769896_INS [dm6]	A	AG	2.282e^-4	0.661	INTRON CG42699 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	12522461	3L_12522461_SNP [dm3] 3L_12529361_SNP [dm6]	A	T	2.288e^-4	0.661	INTRON nst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12450024	3L_12450024_SNP [dm3] 3L_12456924_SNP [dm6]	G	A	2.291e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	19501760	3R_19501760_SNP [dm3] 3R_23676038_SNP [dm6]	C	T	2.291e^-4	0.661	INTERGENIC
2L	19930992	2L_19930992_SNP [dm3] 2L_19930992_SNP [dm6]	A	G	2.297e^-4	0.661	INTRON sick
2R	15325605	2R_15325605_SNP [dm3] 2R_19438100_SNP [dm6]	C	T	2.297e^-4	0.661	SYNONYMOUS_CODING Spt5 UPSTREAM Fak
3R	19826018	3R_19826018_SNP [dm3] 3R_24000296_SNP [dm6]	C	T	2.297e^-4	0.661	SYNONYMOUS_CODING KrT95D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	2959625	3R_2959625_SNP [dm3] 3R_7133903_SNP [dm6]	A	G	2.301e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2645611	3L_2645611_SNP [dm3] 3L_2645611_SNP [dm6]	C	A	2.307e^-4	0.661	INTRON CG1143	TF binding site mE1_TFBS_cad
X	13135751	X_13135751_SNP [dm3] X_13241718_SNP [dm6]	C	T	2.307e^-4	0.661	INTRON mew
X	2926643	X_2926643_SNP [dm3] X_3032610_SNP [dm6]	C	T	2.310e^-4	0.661	INTRON kirre
X	11727403	X_11727403_SNP [dm3] X_11833370_SNP [dm6]	A	T	2.315e^-4	0.661	UTR_3_PRIME rudhira INTRON rudhira
2L	388595	2L_388595_SNP [dm3] 2L_388595_SNP [dm6]	G	T	2.319e^-4	0.661	INTERGENIC
3L	12615746	3L_12615746_MNP [dm3] 3L_12622646_MNP [dm6]	GAA	AGC	2.319e^-4	0.661	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	17327630	2L_17327630_SNP [dm3] 2L_17327630_SNP [dm6]	C	G	2.326e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15614495	3L_15614495_SNP [dm3] 3L_15621395_SNP [dm6]	C	A	2.332e^-4	0.661	NON_SYNONYMOUS_CODING CG7372 INTRON comm3	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	4242100	3L_4242100_SNP [dm3] 3L_4242100_SNP [dm6]	T	C	2.339e^-4	0.661	UPSTREAM pav INTRON CG14997	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20025824	X_20025824_INS [dm3] X_20131791_INS [dm6]	A	ATGTA	2.340e^-4	0.661	UPSTREAM CG42582 INTERGENIC
3R	3963291	3R_3963291_SNP [dm3] 3R_8137569_SNP [dm6]	C	G	2.352e^-4	0.661	INTERGENIC
2L	9580818	2L_9580818_SNP [dm3] 2L_9580818_SNP [dm6]	T	G	2.355e^-4	0.661	NON_SYNONYMOUS_CODING gcm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3R	25287731	3R_25287731_DEL [dm3] 3R_29462009_DEL [dm6]	CACACAC	C	2.362e^-4	0.661	UTR_5_PRIME Ptp99A INTRON Ptp99A	TF binding site BDTNP1_TFBS_twi
3L	14561384	3L_14561384_SNP [dm3] 3L_14568284_SNP [dm6]	G	A	2.364e^-4	0.661	DOWNSTREAM CG42758 INTERGENIC
3L	12160877	3L_12160877_SNP [dm3] 3L_12167777_SNP [dm6]	T	G	2.364e^-4	0.661	INTRON Rh7
X	4093952	X_4093952_SNP [dm3] X_4199919_SNP [dm6]	A	T	2.366e^-4	0.661	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	15077518	3R_15077518_SNP [dm3] 3R_19251796_SNP [dm6]	A	T	2.369e^-4	0.661	INTERGENIC
2L	3815017	2L_3815017_SNP [dm3] 2L_3815017_SNP [dm6]	T	A	2.370e^-4	0.661	UPSTREAM CR44076 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13139061	3R_13139061_SNP [dm3] 3R_17313339_SNP [dm6]	G	T	2.370e^-4	0.661	INTERGENIC
3L	15483252	3L_15483252_SNP [dm3] 3L_15490152_SNP [dm6]	G	T	2.370e^-4	0.661	INTERGENIC
2R	11637320	2R_11637320_SNP [dm3] 2R_15749815_SNP [dm6]	G	A	2.373e^-4	0.661	INTRON CG30089
3L	7480667	3L_7480667_SNP [dm3] 3L_7487567_SNP [dm6]	A	G	2.380e^-4	0.661	SYNONYMOUS_CODING mthl6
2L	16135150	2L_16135150_SNP [dm3] 2L_16135150_SNP [dm6]	G	T	2.381e^-4	0.661	DOWNSTREAM CR44871 & 1 other INTRON CG34168
2R	16644155	2R_16644155_SNP [dm3] 2R_20756650_SNP [dm6]	G	T	2.384e^-4	0.661	INTERGENIC	TF binding site mE1_TFBS_inv
3L	11932882	3L_11932882_SNP [dm3] 3L_11939782_SNP [dm6]	C	T	2.386e^-4	0.661	UPSTREAM CG44837 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	837721	3L_837721_SNP [dm3] 3L_837721_SNP [dm6]	C	G	2.392e^-4	0.661	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	2204953	3L_2204953_SNP [dm3] 3L_2204953_SNP [dm6]	C	T	2.395e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3L	12055410	3L_12055410_SNP [dm3] 3L_12062310_SNP [dm6]	C	T	2.399e^-4	0.661	INTRON rols	TF binding site BDTNP1_TFBS_da
2R	16053170	2R_16053170_SNP [dm3] 2R_20165665_SNP [dm6]	T	C	2.405e^-4	0.661	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	12492353	3R_12492353_DEL [dm3] 3R_16666631_DEL [dm6]	ATAAAA	A	2.407e^-4	0.661	INTRON Ubx
2R	17283642	2R_17283642_SNP [dm3] 2R_21396137_SNP [dm6]	A	G	2.410e^-4	0.661	INTRON Sdc
2L	18885261	2L_18885261_SNP [dm3] 2L_18885261_SNP [dm6]	C	G	2.412e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	7680449	X_7680449_SNP [dm3] X_7786416_SNP [dm6]	A	T	2.415e^-4	0.661	INTERGENIC
3L	9685627	3L_9685627_SNP [dm3] 3L_9692527_SNP [dm6]	A	G	2.416e^-4	0.661	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	9685634	3L_9685634_SNP [dm3] 3L_9692534_SNP [dm6]	C	T	2.416e^-4	0.661	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	9686029	3L_9686029_SNP [dm3] 3L_9692929_SNP [dm6]	A	T	2.416e^-4	0.661	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
3L	9686121	3L_9686121_SNP [dm3] 3L_9693021_SNP [dm6]	T	A	2.416e^-4	0.661	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
2L	20293172	2L_20293172_SNP [dm3] 2L_20293172_SNP [dm6]	T	A	2.431e^-4	0.661	INTERGENIC
X	2926636	X_2926636_SNP [dm3] X_3032603_SNP [dm6]	T	A	2.437e^-4	0.661	INTRON kirre
3L	11841363	3L_11841363_DEL [dm3] 3L_11848263_DEL [dm6]	GG	A	2.441e^-4	0.661	UPSTREAM CG12521 INTERGENIC	transposable element FlyBase
3R	16987203	3R_16987203_SNP [dm3] 3R_21161481_SNP [dm6]	G	C	2.442e^-4	0.661	UPSTREAM CG10824 INTRON SNF4Agamma
2R	1067068	2R_1067068_SNP [dm3] 2R_5179563_SNP [dm6]	A	T	2.452e^-4	0.661	INTRON Nipped-A
2L	5870652	2L_5870652_SNP [dm3] 2L_5870652_SNP [dm6]	T	C	2.455e^-4	0.661	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5228715	X_5228715_SNP [dm3] X_5334682_SNP [dm6]	G	A	2.458e^-4	0.661	DOWNSTREAM CanB INTERGENIC
3L	15483280	3L_15483280_SNP [dm3] 3L_15490180_SNP [dm6]	T	C	2.459e^-4	0.661	INTERGENIC
3L	10025717	3L_10025717_DEL [dm3] 3L_10032617_DEL [dm6]	GCTTTTGTTTAGTC...	G	2.472e^-4	0.661	INTRON dpr6
X	19011939	X_19011939_SNP [dm3] X_19117906_SNP [dm6]	C	A	2.473e^-4	0.661	INTERGENIC
3L	18541070	3L_18541070_SNP [dm3] 3L_18547970_SNP [dm6]	G	A	2.473e^-4	0.661	INTERGENIC
2L	4016813	2L_4016813_SNP [dm3] 2L_4016813_SNP [dm6]	T	C	2.482e^-4	0.661	INTERGENIC
3R	4934322	3R_4934322_SNP [dm3] 3R_9108600_SNP [dm6]	C	T	2.482e^-4	0.661	INTRON pum
2L	2632342	2L_2632342_SNP [dm3] 2L_2632342_SNP [dm6]	A	G	2.487e^-4	0.661	INTERGENIC
X	19572577	X_19572577_SNP [dm3] X_19678544_SNP [dm6]	G	A	2.492e^-4	0.661	SYNONYMOUS_CODING dome	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25574904	3R_25574904_SNP [dm3] 3R_29749182_SNP [dm6]	C	T	2.500e^-4	0.661	UPSTREAM yata & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	10025688	3L_10025688_SNP [dm3] 3L_10032588_SNP [dm6]	A	T	2.500e^-4	0.661	INTRON dpr6
3L	4238717	3L_4238717_SNP [dm3] 3L_4238717_SNP [dm6]	G	T	2.500e^-4	0.661	INTERGENIC
2L	19823317	2L_19823317_SNP [dm3] 2L_19823317_SNP [dm6]	C	A	2.504e^-4	0.661	INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	13934374	X_13934374_SNP [dm3] X_14040341_SNP [dm6]	C	T	2.505e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10579985	2L_10579985_SNP [dm3] 2L_10579985_SNP [dm6]	T	A	2.509e^-4	0.661	DOWNSTREAM CG34161 INTRON Trim9 & 1 other
2R	6796496	2R_6796496_SNP [dm3] 2R_10908991_SNP [dm6]	G	A	2.510e^-4	0.661	UPSTREAM Obp47a INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9686313	3L_9686313_SNP [dm3] 3L_9693213_SNP [dm6]	C	A	2.526e^-4	0.661	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
3R	25825013	3R_25825013_SNP [dm3] 3R_29999291_SNP [dm6]	T	C	2.534e^-4	0.661	SYNONYMOUS_CODING CG11504 UPSTREAM CG34298	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15973654	3R_15973654_SNP [dm3] 3R_20147932_SNP [dm6]	G	C	2.539e^-4	0.661	INTERGENIC
2L	19522016	2L_19522016_SNP [dm3] 2L_19522016_SNP [dm6]	G	T	2.539e^-4	0.661	SYNONYMOUS_CODING CG10132	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21932699	X_21932699_SNP [dm3] X_22530863_SNP [dm6]	C	A	2.542e^-4	0.661	SYNONYMOUS_CODING S6kII INTRON CG17600	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9054294	2L_9054294_SNP [dm3] 2L_9054294_SNP [dm6]	T	A	2.545e^-4	0.661	INTRON CG31708
3L	13549577	3L_13549577_SNP [dm3] 3L_13556477_SNP [dm6]	G	A	2.547e^-4	0.661	INTRON bru-3
2L	14011430	2L_14011430_SNP [dm3] 2L_14011430_SNP [dm6]	G	A	2.550e^-4	0.661	UPSTREAM tRNA:Q:34E INTERGENIC
3R	13243700	3R_13243700_SNP [dm3] 3R_17417978_SNP [dm6]	T	A	2.551e^-4	0.661	UTR_3_PRIME CG33333 UPSTREAM CG42834
2R	19522673	2R_19522673_SNP [dm3] 2R_23635150_SNP [dm6]	G	T	2.555e^-4	0.661	INTRON retn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	13125049	3R_13125049_SNP [dm3] 3R_17299327_SNP [dm6]	A	G	2.565e^-4	0.661	INTERGENIC
3R	25546610	3R_25546610_SNP [dm3] 3R_29720888_SNP [dm6]	A	G	2.565e^-4	0.661	INTRON CG15506
2L	19522029	2L_19522029_SNP [dm3] 2L_19522029_SNP [dm6]	C	T	2.567e^-4	0.661	SYNONYMOUS_CODING CG10132	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16033629	2L_16033629_SNP [dm3] 2L_16033629_SNP [dm6]	A	T	2.572e^-4	0.661	INTRON beat-Ic
2L	2085873	2L_2085873_SNP [dm3] 2L_2085873_SNP [dm6]	C	T	2.577e^-4	0.661	INTRON dpr3
3R	22765416	3R_22765416_SNP [dm3] 3R_26939694_SNP [dm6]	A	G	2.579e^-4	0.661	INTRON sda
3L	2646789	3L_2646789_SNP [dm3] 3L_2646789_SNP [dm6]	T	G	2.579e^-4	0.661	UTR_3_PRIME CG1143 DOWNSTREAM CG1143
X	6643082	X_6643082_INS [dm3] X_6749049_INS [dm6]	A	AACAGAGA	2.584e^-4	0.661	INTRON CG14439
3L	8695957	3L_8695957_DEL [dm3] 3L_8702857_DEL [dm6]	TAT	T	2.587e^-4	0.661	INTERGENIC
3R	12968016	3R_12968016_SNP [dm3] 3R_17142294_SNP [dm6]	G	A	2.587e^-4	0.661	INTRON TwdlW	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19880293	2L_19880293_SNP [dm3] 2L_19880293_SNP [dm6]	A	T	2.595e^-4	0.661	INTRON sick
X	5229317	X_5229317_SNP [dm3] X_5335284_SNP [dm6]	C	T	2.598e^-4	0.661	DOWNSTREAM CanB INTERGENIC
3L	11169351	3L_11169351_SNP [dm3] 3L_11176251_SNP [dm6]	C	A	2.598e^-4	0.661	UTR_3_PRIME CG14142 DOWNSTREAM GlcAT-P
2R	12116819	2R_12116819_SNP [dm3] 2R_16229314_SNP [dm6]	A	G	2.598e^-4	0.661	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19503954	2R_19503954_SNP [dm3] 2R_23616431_SNP [dm6]	C	T	2.613e^-4	0.661	INTRON CG17664
3R	16987139	3R_16987139_DEL [dm3] 3R_21161417_DEL [dm6]	TACGA	T	2.616e^-4	0.661	UPSTREAM CG10824 INTRON SNF4Agamma
3R	16987147	3R_16987147_SNP [dm3] 3R_21161425_SNP [dm6]	A	G	2.616e^-4	0.661	UPSTREAM CG10824 INTRON SNF4Agamma
X	6788786	X_6788786_SNP [dm3] X_6894753_SNP [dm6]	A	C	2.621e^-4	0.661	INTERGENIC
3L	1565411	3L_1565411_SNP [dm3] 3L_1565411_SNP [dm6]	C	T	2.622e^-4	0.661	START_GAINED CG12003 UTR_5_PRIME CG12003 INTRON CG7879	TF binding site mE1_TFBS_sens
2R	15325731	2R_15325731_SNP [dm3] 2R_19438226_SNP [dm6]	T	C	2.628e^-4	0.661	SYNONYMOUS_CODING Spt5 UPSTREAM Fak
3R	22725786	3R_22725786_SNP [dm3] 3R_26900064_SNP [dm6]	C	T	2.636e^-4	0.661	INTRON T48	regulatory region REDfly_CRMs
2R	17266630	2R_17266630_SNP [dm3] 2R_21379125_SNP [dm6]	A	T	2.637e^-4	0.661	UTR_5_PRIME cv-2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	9176344	X_9176344_SNP [dm3] X_9282311_SNP [dm6]	G	A	2.639e^-4	0.661	INTRON c11.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	4952865	2R_4952865_SNP [dm3] 2R_9065360_SNP [dm6]	G	A	2.644e^-4	0.661	INTRON ana	regulatory region REDfly_CRMs
3R	24486158	3R_24486158_SNP [dm3] 3R_28660436_SNP [dm6]	C	T	2.645e^-4	0.661	INTERGENIC
3L	9688709	3L_9688709_SNP [dm3] 3L_9695609_SNP [dm6]	C	G	2.650e^-4	0.661	UPSTREAM CG6767 INTRON CG6767 EXON CR45121	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11933582	3L_11933582_SNP [dm3] 3L_11940482_SNP [dm6]	C	T	2.650e^-4	0.661	INTERGENIC
X	8628993	X_8628993_SNP [dm3] X_8734960_SNP [dm6]	G	A	2.654e^-4	0.661	INTERGENIC
3L	14410434	3L_14410434_SNP [dm3] 3L_14417334_SNP [dm6]	G	A	2.656e^-4	0.661	INTRON bbg
2L	8636210	2L_8636210_DEL [dm3] 2L_8636210_DEL [dm6]	CAGCAGC	C	2.673e^-4	0.661	INTRON Sema-1a
2L	19802454	2L_19802454_SNP [dm3] 2L_19802454_SNP [dm6]	G	T	2.675e^-4	0.661	INTRON sick
3R	9817342	3R_9817342_INS [dm3] 3R_13991620_INS [dm6]	C	CCATG	2.682e^-4	0.661	INTRON rdx
3R	9817346	3R_9817346_INS [dm3] 3R_13991624_INS [dm6]	T	TGATT	2.682e^-4	0.661	INTRON rdx
3L	13310275	3L_13310275_SNP [dm3] 3L_13317175_SNP [dm6]	C	A	2.682e^-4	0.661	INTERGENIC
3L	9686786	3L_9686786_SNP [dm3] 3L_9693686_SNP [dm6]	C	T	2.683e^-4	0.661	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	9385226	3L_9385226_SNP [dm3] 3L_9392126_SNP [dm6]	T	A	2.689e^-4	0.661	INTRON CG4080	TF binding site mE1_TFBS_HSA
2L	7057433	2L_7057433_SNP [dm3] 2L_7057433_SNP [dm6]	C	T	2.691e^-4	0.661	SYNONYMOUS_CODING Mnn1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13884756	2L_13884756_SNP [dm3] 2L_13884756_SNP [dm6]	A	T	2.692e^-4	0.661	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	17590895	2R_17590895_SNP [dm3] 2R_21703390_SNP [dm6]	C	T	2.695e^-4	0.661	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3L	12223152	3L_12223152_SNP [dm3] 3L_12230052_SNP [dm6]	A	T	2.696e^-4	0.661	INTRON app
3R	4363255	3R_4363255_SNP [dm3] 3R_8537533_SNP [dm6]	A	G	2.697e^-4	0.661	INTERGENIC
3R	4349394	3R_4349394_SNP [dm3] 3R_8523672_SNP [dm6]	G	A	2.702e^-4	0.661	UPSTREAM CG31259 DOWNSTREAM CG31454 INTERGENIC
X	13934383	X_13934383_DEL [dm3] X_14040350_DEL [dm6]	TT	T	2.702e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3763790	3L_3763790_SNP [dm3] 3L_3763790_SNP [dm6]	A	T	2.707e^-4	0.661	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15593926	2L_15593926_SNP [dm3] 2L_15593926_SNP [dm6]	G	A	2.708e^-4	0.661	INTERGENIC
X	13026411	X_13026411_INS [dm3] X_13132378_INS [dm6]	T	TTTTT	2.709e^-4	0.661	INTRON MFS10 & 1 other
3R	5452909	3R_5452909_SNP [dm3] 3R_9627187_SNP [dm6]	T	A	2.713e^-4	0.661	UPSTREAM CG8319 & 1 other INTERGENIC	TF binding site mE1_TFBS_ttk
3L	12646436	3L_12646436_SNP [dm3] 3L_12653336_SNP [dm6]	A	T	2.714e^-4	0.661	UPSTREAM CR43431 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	5833873	2R_5833873_SNP [dm3] 2R_9946368_SNP [dm6]	T	A	2.720e^-4	0.661	INTRON Mef2
3L	391927	3L_391927_INS [dm3] 3L_391927_INS [dm6]	A	AATTGGAT	2.720e^-4	0.661	DOWNSTREAM CR45378 INTRON trh
2L	8954661	2L_8954661_SNP [dm3] 2L_8954661_SNP [dm6]	G	A	2.720e^-4	0.661	SYNONYMOUS_CODING CG31886	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	23141757	3R_23141757_SNP [dm3] 3R_27316035_SNP [dm6]	T	A	2.722e^-4	0.661	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	8429011	3R_8429011_SNP [dm3] 3R_12603289_SNP [dm6]	A	G	2.726e^-4	0.661	INTERGENIC
2L	10471653	2L_10471653_SNP [dm3] 2L_10471653_SNP [dm6]	C	A	2.727e^-4	0.661	SYNONYMOUS_CODING RluA-1	TF binding site mE1_TFBS_chinmo
2L	6735678	2L_6735678_SNP [dm3] 2L_6735678_SNP [dm6]	T	G	2.727e^-4	0.661	UTR_3_PRIME TTLL3B DOWNSTREAM TTLL3A	TF binding site BDTNP1_TFBS_twi
3L	7479848	3L_7479848_SNP [dm3] 3L_7486748_SNP [dm6]	C	A	2.731e^-4	0.661	SPLICE_SITE_REGION mthl6 INTRON mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2519771	2L_2519771_DEL [dm3] 2L_2519771_DEL [dm6]	CAGAGAACTTC...	C	2.732e^-4	0.661	INTERGENIC
2L	8448106	2L_8448106_SNP [dm3] 2L_8448106_SNP [dm6]	G	A	2.736e^-4	0.661	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19390516	2R_19390516_SNP [dm3] 2R_23502993_SNP [dm6]	G	A	2.744e^-4	0.661	UTR_5_PRIME CG13559	TF binding site mE1_TFBS_inv
3L	392009	3L_392009_SNP [dm3] 3L_392009_SNP [dm6]	T	A	2.748e^-4	0.661	INTRON trh EXON CR45378
X	9849318	X_9849318_DEL [dm3] X_9955285_DEL [dm6]	TCGACT	T	2.753e^-4	0.661	INTERGENIC
3L	11911451	3L_11911451_SNP [dm3] 3L_11918351_SNP [dm6]	T	A	2.755e^-4	0.661	INTRON CG44837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3R	25571420	3R_25571420_SNP [dm3] 3R_29745698_SNP [dm6]	C	T	2.756e^-4	0.661	UPSTREAM CG7609 INTRON IntS11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	21921668	X_21921668_SNP [dm3] X_22519832_SNP [dm6]	A	T	2.757e^-4	0.661	INTRON CG17600
X	18454868	X_18454868_SNP [dm3] X_18560835_SNP [dm6]	G	T	2.765e^-4	0.661	INTRON Bx
2R	3665694	2R_3665694_SNP [dm3] 2R_7778189_SNP [dm6]	A	G	2.769e^-4	0.661	INTRON CG30497 & 1 other
2L	6830416	2L_6830416_SNP [dm3] 2L_6830416_SNP [dm6]	C	T	2.773e^-4	0.661	INTRON sens-2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	19842200	2L_19842200_INS [dm3] 2L_19842200_INS [dm6]	C	CCC	2.777e^-4	0.661	INTRON sick
2L	2519691	2L_2519691_SNP [dm3] 2L_2519691_SNP [dm6]	T	C	2.796e^-4	0.661	INTERGENIC
2L	16467975	2L_16467975_SNP [dm3] 2L_16467975_SNP [dm6]	G	C	2.796e^-4	0.661	INTRON dac	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	4238728	3L_4238728_SNP [dm3] 3L_4238728_SNP [dm6]	A	T	2.797e^-4	0.661	INTERGENIC
2R	8137155	2R_8137155_SNP [dm3] 2R_12249650_SNP [dm6]	A	G	2.799e^-4	0.661	INTERGENIC
2R	8137167	2R_8137167_INS [dm3] 2R_12249662_INS [dm6]	C	CCT	2.799e^-4	0.661	INTERGENIC
2R	8137175	2R_8137175_INS [dm3] 2R_12249670_INS [dm6]	C	TCTT	2.799e^-4	0.661	INTERGENIC
2R	6658026	2R_6658026_SNP [dm3] 2R_10770521_SNP [dm6]	A	G	2.800e^-4	0.661	INTRON CG33144
2L	15281222	2L_15281222_SNP [dm3] 2L_15281222_SNP [dm6]	A	G	2.801e^-4	0.661	DOWNSTREAM CR45349 INTERGENIC
2R	7601899	2R_7601899_INS [dm3] 2R_11714394_INS [dm6]	C	ATGGTA	2.801e^-4	0.661	INTRON pyr
3L	16896018	3L_16896018_SNP [dm3] 3L_16902918_SNP [dm6]	G	A	2.802e^-4	0.661	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo
2L	16467954	2L_16467954_SNP [dm3] 2L_16467954_SNP [dm6]	A	T	2.803e^-4	0.661	INTRON dac	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	11053490	2R_11053490_SNP [dm3] 2R_15165985_SNP [dm6]	G	A	2.804e^-4	0.661	INTRON igl
2L	19835388	2L_19835388_SNP [dm3] 2L_19835388_SNP [dm6]	C	T	2.812e^-4	0.661	INTRON sick
3L	4100435	3L_4100435_SNP [dm3] 3L_4100435_SNP [dm6]	A	C	2.818e^-4	0.661	INTRON CG14995
2R	12539181	2R_12539181_SNP [dm3] 2R_16651676_SNP [dm6]	G	C	2.818e^-4	0.661	SYNONYMOUS_CODING Amyrel DOWNSTREAM gprs	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3986892	2L_3986892_SNP [dm3] 2L_3986892_SNP [dm6]	G	A	2.820e^-4	0.661	INTRON fred
3R	21341392	3R_21341392_SNP [dm3] 3R_25515670_SNP [dm6]	T	A	2.822e^-4	0.661	UPSTREAM msi INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	16135146	2L_16135146_SNP [dm3] 2L_16135146_SNP [dm6]	T	A	2.824e^-4	0.661	DOWNSTREAM CR44871 & 1 other INTRON CG34168
2L	5758264	2L_5758264_SNP [dm3] 2L_5758264_SNP [dm6]	A	C	2.825e^-4	0.661	INTRON CG11030	TF binding site mE1_TFBS_cad
X	13020176	X_13020176_SNP [dm3] X_13126143_SNP [dm6]	T	C	2.828e^-4	0.661	SYNONYMOUS_CODING CG32638
3L	10774650	3L_10774650_SNP [dm3] 3L_10781550_SNP [dm6]	G	A	2.828e^-4	0.661	INTERGENIC
3L	3763804	3L_3763804_SNP [dm3] 3L_3763804_SNP [dm6]	T	C	2.840e^-4	0.661	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3301706	2L_3301706_SNP [dm3] 2L_3301706_SNP [dm6]	G	A	2.841e^-4	0.661	UTR_5_PRIME CG9663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	1705378	3R_1705378_SNP [dm3] 3R_5879656_SNP [dm6]	T	G	2.845e^-4	0.661	SYNONYMOUS_CODING CG34113 INTRON CG34113
2L	7538273	2L_7538273_SNP [dm3] 2L_7538273_SNP [dm6]	A	G	2.849e^-4	0.661	INTRON RapGAP1
3R	4332923	3R_4332923_SNP [dm3] 3R_8507201_SNP [dm6]	C	T	2.850e^-4	0.661	INTERGENIC
2L	10488585	2L_10488585_SNP [dm3] 2L_10488585_SNP [dm6]	G	A	2.854e^-4	0.661	UTR_5_PRIME CG7456 UPSTREAM CG6144	TF binding site mE1_TFBS_Ubx
3L	6714534	3L_6714534_SNP [dm3] 3L_6721434_SNP [dm6]	G	T	2.859e^-4	0.661	INTERGENIC
X	18640623	X_18640623_INS [dm3] X_18746590_INS [dm6]	G	GG	2.865e^-4	0.661	UTR_3_PRIME CG12609
2R	9147435	2R_9147435_SNP [dm3] 2R_13259930_SNP [dm6]	T	A	2.868e^-4	0.661	UPSTREAM CG42319 INTERGENIC
2L	17328469	2L_17328469_SNP [dm3] 2L_17328469_SNP [dm6]	A	T	2.875e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19994018	2R_19994018_SNP [dm3] 2R_24106495_SNP [dm6]	A	G	2.887e^-4	0.661	SYNONYMOUS_CODING enok DOWNSTREAM CG4049	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4997669	3L_4997669_SNP [dm3] 3L_4997669_SNP [dm6]	A	C	2.888e^-4	0.661	UPSTREAM CG32232 INTRON Con
3L	9555353	3L_9555353_SNP [dm3] 3L_9562253_SNP [dm6]	T	A	2.890e^-4	0.661	INTRON CG42673
2R	15895805	2R_15895805_SNP [dm3] 2R_20008300_SNP [dm6]	T	C	2.890e^-4	0.661	DOWNSTREAM CR44628 INTERGENIC
3R	2693041	3R_2693041_SNP [dm3] 3R_6867319_SNP [dm6]	G	A	2.892e^-4	0.661	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3L	2899315	3L_2899315_SNP [dm3] 3L_2899315_SNP [dm6]	C	T	2.894e^-4	0.661	INTRON Shab
2L	16467971	2L_16467971_SNP [dm3] 2L_16467971_SNP [dm6]	G	C	2.899e^-4	0.661	INTRON dac	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	13763940	2R_13763940_SNP [dm3] 2R_17876435_SNP [dm6]	G	A	2.901e^-4	0.661	INTRON Elk
3R	15083738	3R_15083738_SNP [dm3] 3R_19258016_SNP [dm6]	G	A	2.903e^-4	0.661	NON_SYNONYMOUS_CODING CG14280	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7213853	2L_7213853_SNP [dm3] 2L_7213853_SNP [dm6]	C	G	2.906e^-4	0.661	INTRON CG13784	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13875541	2L_13875541_SNP [dm3] 2L_13875541_SNP [dm6]	C	G	2.907e^-4	0.661	INTRON CenG1A
3L	4243760	3L_4243760_SNP [dm3] 3L_4243760_SNP [dm6]	G	C	2.909e^-4	0.661	SPLICE_SITE_REGION pav INTRON pav	TF binding site mE1_TFBS_sens
3R	25571687	3R_25571687_SNP [dm3] 3R_29745965_SNP [dm6]	C	T	2.926e^-4	0.661	SYNONYMOUS_CODING IntS11 UPSTREAM CG7609	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18697135	3R_18697135_SNP [dm3] 3R_22871413_SNP [dm6]	T	C	2.930e^-4	0.661	INTERGENIC
2R	13242799	2R_13242799_SNP [dm3] 2R_17355294_SNP [dm6]	T	G	2.936e^-4	0.661	INTRON mbl
3R	18480610	3R_18480610_SNP [dm3] 3R_22654888_SNP [dm6]	T	C	2.949e^-4	0.661	INTRON CG45058
3L	15610573	3L_15610573_SNP [dm3] 3L_15617473_SNP [dm6]	G	A	2.950e^-4	0.661	INTRON comm3
3L	15610581	3L_15610581_DEL [dm3] 3L_15617481_DEL [dm6]	GGCC	TT	2.950e^-4	0.661	INTRON comm3
3L	15610600	3L_15610600_SNP [dm3] 3L_15617500_SNP [dm6]	A	C	2.950e^-4	0.661	INTRON comm3
X	16690541	X_16690541_SNP [dm3] X_16796508_SNP [dm6]	T	C	2.950e^-4	0.661	UTR_3_PRIME CG4768 DOWNSTREAM CG9132 & 1 other
3L	443363	3L_443363_SNP [dm3] 3L_443363_SNP [dm6]	G	T	2.958e^-4	0.661	INTRON klar	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	8371767	2R_8371767_SNP [dm3] 2R_12484262_SNP [dm6]	T	A	2.959e^-4	0.661	INTRON Dh44-R2
2L	8447795	2L_8447795_SNP [dm3] 2L_8447795_SNP [dm6]	C	T	2.960e^-4	0.661	SYNONYMOUS_CODING U26 UTR_3_PRIME U26
2R	2935611	2R_2935611_SNP [dm3] 2R_7048106_SNP [dm6]	T	G	2.960e^-4	0.661	NON_SYNONYMOUS_CODING Tsp42El
3R	13678723	3R_13678723_INS [dm3] 3R_17853001_INS [dm6]	A	AATATATA	2.966e^-4	0.661	INTRON tinc
3L	4995170	3L_4995170_SNP [dm3] 3L_4995170_SNP [dm6]	G	A	2.967e^-4	0.661	NON_SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3L	4995221	3L_4995221_SNP [dm3] 3L_4995221_SNP [dm6]	C	T	2.967e^-4	0.661	NON_SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site BDTNP1_TFBS_hb mE1_TFBS_sens
3L	4995233	3L_4995233_SNP [dm3] 3L_4995233_SNP [dm6]	G	T	2.967e^-4	0.661	SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site BDTNP1_TFBS_hb mE1_TFBS_sens
3L	4995242	3L_4995242_SNP [dm3] 3L_4995242_SNP [dm6]	T	C	2.967e^-4	0.661	NON_SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site BDTNP1_TFBS_hb mE1_TFBS_sens
3R	21320390	3R_21320390_SNP [dm3] 3R_25494668_SNP [dm6]	A	G	2.968e^-4	0.661	INTRON CG33494
2R	6277618	2R_6277618_MNP [dm3] 2R_10390113_MNP [dm6]	AATA	CTCG	2.976e^-4	0.661	INTRON CG42732
X	17929904	X_17929904_SNP [dm3] X_18035871_SNP [dm6]	A	G	2.979e^-4	0.661	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13948455	2L_13948455_SNP [dm3] 2L_13948455_SNP [dm6]	G	A	2.980e^-4	0.661	UPSTREAM CG16884 INTRON Ance-3
3R	25570307	3R_25570307_SNP [dm3] 3R_29744585_SNP [dm6]	A	G	2.980e^-4	0.661	SYNONYMOUS_CODING CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19851901	2L_19851901_SNP [dm3] 2L_19851901_SNP [dm6]	A	G	2.988e^-4	0.661	INTRON sick
2R	13506030	2R_13506030_SNP [dm3] 2R_17618525_SNP [dm6]	C	A	2.990e^-4	0.661	UPSTREAM CG44403 INTRON CG10936
2L	16840396	2L_16840396_SNP [dm3] 2L_16840396_SNP [dm6]	T	C	2.992e^-4	0.661	UTR_3_PRIME SclA & 1 other INTRON SclA
2R	8137696	2R_8137696_SNP [dm3] 2R_12250191_SNP [dm6]	A	T	2.994e^-4	0.661	INTERGENIC
2L	6529450	2L_6529450_SNP [dm3] 2L_6529450_SNP [dm6]	G	A	2.996e^-4	0.661	SYNONYMOUS_CODING eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13947108	2L_13947108_SNP [dm3] 2L_13947108_SNP [dm6]	T	A	2.996e^-4	0.661	UTR_5_PRIME CG16884 INTRON Ance-3
3L	9690515	3L_9690515_SNP [dm3] 3L_9697415_SNP [dm6]	T	A	2.998e^-4	0.661	UPSTREAM CG6767 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	18088167	3R_18088167_SNP [dm3] 3R_22262445_SNP [dm6]	T	C	3.009e^-4	0.661	INTRON SKIP
2L	16135118	2L_16135118_SNP [dm3] 2L_16135118_SNP [dm6]	G	A	3.013e^-4	0.661	DOWNSTREAM CR44871 & 1 other INTRON CG34168
2R	8132843	2R_8132843_SNP [dm3] 2R_12245338_SNP [dm6]	T	A	3.015e^-4	0.661	UPSTREAM CG43244 INTERGENIC
2L	9580759	2L_9580759_SNP [dm3] 2L_9580759_SNP [dm6]	G	A	3.024e^-4	0.661	SYNONYMOUS_CODING gcm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2R	11976055	2R_11976055_SNP [dm3] 2R_16088550_SNP [dm6]	C	A	3.026e^-4	0.661	INTRON Dg
X	3287436	X_3287436_SNP [dm3] X_3393403_SNP [dm6]	C	T	3.028e^-4	0.661	SYNONYMOUS_CODING CG12535 INTRON CR44999	TF binding site mE1_TFBS_HSA
X	3287521	X_3287521_SNP [dm3] X_3393488_SNP [dm6]	T	C	3.028e^-4	0.661	UTR_5_PRIME CG12535 INTRON CR44999	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17590878	2R_17590878_SNP [dm3] 2R_21703373_SNP [dm6]	T	C	3.042e^-4	0.661	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3R	25570322	3R_25570322_SNP [dm3] 3R_29744600_SNP [dm6]	A	G	3.045e^-4	0.661	SYNONYMOUS_CODING CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8702856	2L_8702856_SNP [dm3] 2L_8702856_SNP [dm6]	A	T	3.047e^-4	0.661	UPSTREAM CR44992 INTRON Hnf4
3L	11933910	3L_11933910_DEL [dm3] 3L_11940810_DEL [dm6]	CC	C	3.050e^-4	0.661	INTERGENIC
3R	25571102	3R_25571102_SNP [dm3] 3R_29745380_SNP [dm6]	C	T	3.051e^-4	0.661	START_GAINED IntS11 UTR_5_PRIME IntS11 UPSTREAM CG7609	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	19357158	3R_19357158_SNP [dm3] 3R_23531436_SNP [dm6]	T	C	3.057e^-4	0.661	UPSTREAM CG10175 INTERGENIC
2L	16619019	2L_16619019_SNP [dm3] 2L_16619019_SNP [dm6]	T	A	3.065e^-4	0.661	INTRON CG42389	TF binding site BDTNP1_TFBS_dl
2L	19817600	2L_19817600_SNP [dm3] 2L_19817600_SNP [dm6]	A	C	3.066e^-4	0.661	INTRON sick	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	415143	3L_415143_DEL [dm3] 3L_415143_DEL [dm6]	AA	A	3.066e^-4	0.661	INTERGENIC
2R	19484343	2R_19484343_SNP [dm3] 2R_23596820_SNP [dm6]	G	A	3.074e^-4	0.661	INTRON apt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19364798	2R_19364798_DEL [dm3] 2R_23477275_DEL [dm6]	CAGCTGCACATTGC...	C	3.084e^-4	0.661	UPSTREAM CG13557 DOWNSTREAM CR43792 INTRON CG43795 EXON CR43793
X	17935682	X_17935682_SNP [dm3] X_18041649_SNP [dm6]	T	C	3.088e^-4	0.661	INTRON Sh
3R	4382182	3R_4382182_SNP [dm3] 3R_8556460_SNP [dm6]	G	A	3.089e^-4	0.661	INTERGENIC
X	3290177	X_3290177_SNP [dm3] X_3396144_SNP [dm6]	T	G	3.096e^-4	0.661	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	3290178	X_3290178_SNP [dm3] X_3396145_SNP [dm6]	T	C	3.096e^-4	0.661	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	9361660	2L_9361660_SNP [dm3] 2L_9361660_SNP [dm6]	T	G	3.097e^-4	0.661	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	19254911	3R_19254911_SNP [dm3] 3R_23429189_SNP [dm6]	C	T	3.097e^-4	0.661	INTRON CG4374	TF binding site BDTNP1_TFBS_prd
3L	1564689	3L_1564689_SNP [dm3] 3L_1564689_SNP [dm6]	T	C	3.102e^-4	0.661	UPSTREAM CG12003 INTRON CG7879
3L	22191164	3L_22191164_SNP [dm3] 3L_22198064_SNP [dm6]	G	A	3.106e^-4	0.661	INTRON olf413
X	9849341	X_9849341_SNP [dm3] X_9955308_SNP [dm6]	C	T	3.108e^-4	0.661	INTERGENIC
X	3933944	X_3933944_DEL [dm3] X_4039911_DEL [dm6]	TAATAAAATCCTTCTT...	T	3.121e^-4	0.661	INTERGENIC
2L	19898621	2L_19898621_SNP [dm3] 2L_19898621_SNP [dm6]	G	T	3.121e^-4	0.661	INTRON sick
3R	17525675	3R_17525675_SNP [dm3] 3R_21699953_SNP [dm6]	T	C	3.125e^-4	0.661	INTRON CG31176
2L	19806612	2L_19806612_SNP [dm3] 2L_19806612_SNP [dm6]	C	T	3.126e^-4	0.661	INTRON sick
3L	12148122	3L_12148122_SNP [dm3] 3L_12155022_SNP [dm6]	C	T	3.140e^-4	0.661	SYNONYMOUS_CODING Nrx-IV	TF binding site mE1_TFBS_sens
3R	25825097	3R_25825097_SNP [dm3] 3R_29999375_SNP [dm6]	A	G	3.143e^-4	0.661	SYNONYMOUS_CODING CG11504 UPSTREAM CG34298	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13872341	3L_13872341_SNP [dm3] 3L_13879241_SNP [dm6]	G	C	3.151e^-4	0.661	INTRON dysc & 1 other
X	11727955	X_11727955_SNP [dm3] X_11833922_SNP [dm6]	A	G	3.154e^-4	0.661	UTR_3_PRIME rudhira DOWNSTREAM rudhira INTRON rudhira
2L	10516194	2L_10516194_SNP [dm3] 2L_10516194_SNP [dm6]	T	G	3.162e^-4	0.661	INTRON Fatp & 1 other	TF binding site BDTNP1_TFBS_dl
2L	19822544	2L_19822544_SNP [dm3] 2L_19822544_SNP [dm6]	A	C	3.162e^-4	0.661	INTRON sick
2L	3245320	2L_3245320_SNP [dm3] 2L_3245320_SNP [dm6]	T	C	3.164e^-4	0.661	INTERGENIC
3R	2516478	3R_2516478_SNP [dm3] 3R_6690756_SNP [dm6]	A	G	3.171e^-4	0.661	UPSTREAM Ccp84Af DOWNSTREAM Ccp84Ae INTERGENIC
2L	4512885	2L_4512885_SNP [dm3] 2L_4512885_SNP [dm6]	C	T	3.178e^-4	0.661	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	11335637	X_11335637_SNP [dm3] X_11441604_SNP [dm6]	C	T	3.180e^-4	0.661	UPSTREAM Sk1 INTRON Evi5
2L	2273338	2L_2273338_SNP [dm3] 2L_2273338_SNP [dm6]	G	C	3.181e^-4	0.661	INTRON CR43753
3R	10813892	3R_10813892_SNP [dm3] 3R_14988170_SNP [dm6]	A	G	3.182e^-4	0.661	INTERGENIC
2R	13917272	2R_13917272_SNP [dm3] 2R_18029767_SNP [dm6]	C	T	3.188e^-4	0.661	INTERGENIC
2R	2787151	2R_2787151_SNP [dm3] 2R_6899646_SNP [dm6]	A	T	3.194e^-4	0.661	INTRON CG30158
3L	12440333	3L_12440333_SNP [dm3] 3L_12447233_SNP [dm6]	A	T	3.200e^-4	0.661	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	392008	3L_392008_SNP [dm3] 3L_392008_SNP [dm6]	T	A	3.201e^-4	0.661	INTRON trh EXON CR45378
2R	20190945	2R_20190945_SNP [dm3] 2R_24303422_SNP [dm6]	A	C	3.202e^-4	0.661	INTERGENIC
3L	17633388	3L_17633388_SNP [dm3] 3L_17640288_SNP [dm6]	A	G	3.202e^-4	0.661	INTRON Pep	TF binding site mE1_TFBS_cad
3L	6846539	3L_6846539_SNP [dm3] 3L_6853439_SNP [dm6]	C	T	3.204e^-4	0.661	INTERGENIC
3R	3962708	3R_3962708_SNP [dm3] 3R_8136986_SNP [dm6]	C	T	3.204e^-4	0.661	INTERGENIC
2L	19824511	2L_19824511_SNP [dm3] 2L_19824511_SNP [dm6]	C	T	3.206e^-4	0.661	INTRON sick
3R	14950843	3R_14950843_SNP [dm3] 3R_19125121_SNP [dm6]	A	G	3.207e^-4	0.661	SYNONYMOUS_CODING CG6040	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17935662	X_17935662_SNP [dm3] X_18041629_SNP [dm6]	A	T	3.209e^-4	0.661	INTRON Sh
2R	18769488	2R_18769488_SNP [dm3] 2R_22881965_SNP [dm6]	G	A	3.211e^-4	0.661	DOWNSTREAM PIP5K59B & 1 other INTRON CG3501	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4924712	3L_4924712_SNP [dm3] 3L_4924712_SNP [dm6]	C	A	3.214e^-4	0.661	INTERGENIC
2R	15944123	2R_15944123_SNP [dm3] 2R_20056618_SNP [dm6]	C	A	3.218e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3825068	2L_3825068_SNP [dm3] 2L_3825068_SNP [dm6]	T	G	3.221e^-4	0.661	UPSTREAM slp1 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	15479704	3L_15479704_SNP [dm3] 3L_15486604_SNP [dm6]	A	G	3.224e^-4	0.661	INTERGENIC
2L	17783509	2L_17783509_SNP [dm3] 2L_17783509_SNP [dm6]	T	G	3.228e^-4	0.661	INTERGENIC
2L	11686657	2L_11686657_SNP [dm3] 2L_11686657_SNP [dm6]	T	C	3.236e^-4	0.661	INTERGENIC
2L	18917742	2L_18917742_SNP [dm3] 2L_18917742_SNP [dm6]	G	A	3.238e^-4	0.661	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	1264972	2R_1264972_SNP [dm3] 2R_5377467_SNP [dm6]	T	C	3.246e^-4	0.661	INTERGENIC	transposable element FlyBase
2R	8137699	2R_8137699_SNP [dm3] 2R_12250194_SNP [dm6]	T	C	3.247e^-4	0.661	INTERGENIC
2L	19902216	2L_19902216_SNP [dm3] 2L_19902216_SNP [dm6]	T	C	3.255e^-4	0.661	INTRON sick	TF binding site mE1_TFBS_sens
2R	5980524	2R_5980524_SNP [dm3] 2R_10093019_SNP [dm6]	A	C	3.258e^-4	0.661	INTRON CG2269
3L	502682	3L_502682_SNP [dm3] 3L_502682_SNP [dm6]	G	A	3.258e^-4	0.661	INTRON klar
X	11409369	X_11409369_SNP [dm3] X_11515336_SNP [dm6]	T	G	3.260e^-4	0.661	INTRON Drak	TF binding site mE1_TFBS_Kr
3L	796590	3L_796590_SNP [dm3] 3L_796590_SNP [dm6]	A	G	3.263e^-4	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	7100403	2L_7100403_SNP [dm3] 2L_7100403_SNP [dm6]	G	A	3.267e^-4	0.661	SYNONYMOUS_CODING Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	14231418	3R_14231418_SNP [dm3] 3R_18405696_SNP [dm6]	G	C	3.268e^-4	0.661	SYNONYMOUS_CODING CG7685 DOWNSTREAM koko & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19504706	2R_19504706_SNP [dm3] 2R_23617183_SNP [dm6]	T	G	3.268e^-4	0.661	UPSTREAM CG17664 INTERGENIC	TF binding site mE1_TFBS_sens
2R	2953140	2R_2953140_SNP [dm3] 2R_7065635_SNP [dm6]	C	A	3.273e^-4	0.661	INTRON Tsp42Er
2R	2953141	2R_2953141_SNP [dm3] 2R_7065636_SNP [dm6]	A	G	3.273e^-4	0.661	INTRON Tsp42Er
3L	1564489	3L_1564489_SNP [dm3] 3L_1564489_SNP [dm6]	A	G	3.273e^-4	0.661	UPSTREAM CG12003 INTRON CG7879
2L	637988	2L_637988_SNP [dm3] 2L_637988_SNP [dm6]	T	A	3.275e^-4	0.661	INTERGENIC
2L	13211544	2L_13211544_SNP [dm3] 2L_13211544_SNP [dm6]	T	C	3.276e^-4	0.661	NON_SYNONYMOUS_CODING CG15482 DOWNSTREAM Pect & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19390514	2R_19390514_SNP [dm3] 2R_23502991_SNP [dm6]	G	T	3.276e^-4	0.661	START_GAINED CG13559 UTR_5_PRIME CG13559	TF binding site mE1_TFBS_inv
3R	17525623	3R_17525623_SNP [dm3] 3R_21699901_SNP [dm6]	G	A	3.276e^-4	0.661	INTRON CG31176
3L	16824644	3L_16824644_SNP [dm3] 3L_16831544_SNP [dm6]	A	G	3.278e^-4	0.661	INTERGENIC	TF binding site mE1_TFBS_inv
2L	7527684	2L_7527684_SNP [dm3] 2L_7527684_SNP [dm6]	A	T	3.280e^-4	0.661	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	19921778	2L_19921778_SNP [dm3] 2L_19921778_SNP [dm6]	C	T	3.286e^-4	0.661	INTRON sick EXON CR43828
2L	19946219	2L_19946219_SNP [dm3] 2L_19946219_SNP [dm6]	C	G	3.289e^-4	0.661	SYNONYMOUS_CODING sick INTRON sick	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10508777	2R_10508777_SNP [dm3] 2R_14621272_SNP [dm6]	A	T	3.296e^-4	0.661	UTR_5_PRIME CG12863 UPSTREAM Uhg5 & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_zfh1
X	13026420	X_13026420_SNP [dm3] X_13132387_SNP [dm6]	A	T	3.300e^-4	0.661	INTRON MFS10 & 1 other
3L	1828555	3L_1828555_SNP [dm3] 3L_1828555_SNP [dm6]	C	A	3.306e^-4	0.661	INTRON Cpr62Ba
2L	19890136	2L_19890136_SNP [dm3] 2L_19890136_SNP [dm6]	T	G	3.308e^-4	0.661	DOWNSTREAM CG10481 INTRON sick
2R	16661557	2R_16661557_SNP [dm3] 2R_20774052_SNP [dm6]	T	A	3.309e^-4	0.661	NON_SYNONYMOUS_CODING CG13443	TF binding site mE1_TFBS_chinmo
3R	10435085	3R_10435085_SNP [dm3] 3R_14609363_SNP [dm6]	G	T	3.310e^-4	0.661	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	411991	3L_411991_SNP [dm3] 3L_411991_SNP [dm6]	A	T	3.310e^-4	0.661	INTERGENIC
2L	8082134	2L_8082134_SNP [dm3] 2L_8082134_SNP [dm6]	A	T	3.312e^-4	0.661	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2L	13948496	2L_13948496_SNP [dm3] 2L_13948496_SNP [dm6]	C	T	3.316e^-4	0.661	INTRON Ance-3
3L	14919557	3L_14919557_SNP [dm3] 3L_14926457_SNP [dm6]	T	G	3.319e^-4	0.661	UTR_5_PRIME DCX-EMAP INTRON DCX-EMAP	TF binding site mE1_TFBS_cad
X	21215575	X_21215575_SNP [dm3] X_21344548_SNP [dm6]	T	G	3.324e^-4	0.661	UTR_3_PRIME fliI UPSTREAM dod	TF binding site BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	14871517	2L_14871517_INS [dm3] 2L_14871517_INS [dm6]	A	AC	3.334e^-4	0.661	INTRON CG4480
2L	17858071	2L_17858071_SNP [dm3] 2L_17858071_SNP [dm6]	T	C	3.336e^-4	0.661	INTRON CadN2
3L	6716460	3L_6716460_SNP [dm3] 3L_6723360_SNP [dm6]	A	G	3.347e^-4	0.661	INTERGENIC	regulatory region REDfly_CRMs
2L	19901774	2L_19901774_SNP [dm3] 2L_19901774_SNP [dm6]	A	C	3.350e^-4	0.661	INTRON sick
2L	9104800	2L_9104800_SNP [dm3] 2L_9104800_SNP [dm6]	C	T	3.350e^-4	0.661	INTERGENIC
2R	2695067	2R_2695067_SNP [dm3] 2R_6807562_SNP [dm6]	C	A	3.352e^-4	0.661	UPSTREAM SdhB INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	15959973	2L_15959973_SNP [dm3] 2L_15959973_SNP [dm6]	G	A	3.356e^-4	0.661	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
3L	391899	3L_391899_INS [dm3] 3L_391899_INS [dm6]	G	GCCAATCTG	3.363e^-4	0.661	DOWNSTREAM CR45378 INTRON trh
3R	19322132	3R_19322132_SNP [dm3] 3R_23496410_SNP [dm6]	A	C	3.364e^-4	0.661	INTERGENIC
2L	13948457	2L_13948457_SNP [dm3] 2L_13948457_SNP [dm6]	A	G	3.366e^-4	0.661	UPSTREAM CG16884 INTRON Ance-3
3L	7594006	3L_7594006_SNP [dm3] 3L_7600906_SNP [dm6]	A	C	3.366e^-4	0.661	INTRON CG33275
3R	21655013	3R_21655013_SNP [dm3] 3R_25829291_SNP [dm6]	C	G	3.368e^-4	0.661	DOWNSTREAM Mst57Dc & 1 other INTERGENIC
2L	19890151	2L_19890151_DEL [dm3] 2L_19890151_DEL [dm6]	TTGCGTATCCATAA...	T	3.371e^-4	0.661	DOWNSTREAM CG10481 INTRON sick
2L	7213850	2L_7213850_SNP [dm3] 2L_7213850_SNP [dm6]	A	T	3.377e^-4	0.661	INTRON CG13784	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13026415	X_13026415_SNP [dm3] X_13132382_SNP [dm6]	A	T	3.380e^-4	0.661	INTRON MFS10 & 1 other
X	4140631	X_4140631_DEL [dm3] X_4246598_DEL [dm6]	AAA	T	3.392e^-4	0.661	UPSTREAM Muc4B & 1 other INTERGENIC
3R	17759279	3R_17759279_SNP [dm3] 3R_21933557_SNP [dm6]	A	G	3.395e^-4	0.661	INTERGENIC
2L	9104481	2L_9104481_SNP [dm3] 2L_9104481_SNP [dm6]	T	A	3.400e^-4	0.661	INTERGENIC
3R	13314664	3R_13314664_SNP [dm3] 3R_17488942_SNP [dm6]	C	T	3.405e^-4	0.661	INTRON Dscam3
2L	14150313	2L_14150313_SNP [dm3] 2L_14150313_SNP [dm6]	T	C	3.408e^-4	0.661	INTRON CG17341
2R	156485	2R_156485_SNP [dm3] 2R_4268980_SNP [dm6]	G	T	3.408e^-4	0.661	INTERGENIC
3R	24829734	3R_24829734_SNP [dm3] 3R_29004012_SNP [dm6]	A	G	3.408e^-4	0.661	INTRON wat
3L	3763951	3L_3763951_SNP [dm3] 3L_3763951_SNP [dm6]	A	G	3.410e^-4	0.661	INTRON CG32264	TF binding site BDTNP1_TFBS_dl
3L	14561392	3L_14561392_SNP [dm3] 3L_14568292_SNP [dm6]	T	C	3.413e^-4	0.661	DOWNSTREAM CG42758 INTERGENIC
2L	8082135	2L_8082135_SNP [dm3] 2L_8082135_SNP [dm6]	A	G	3.415e^-4	0.661	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	20819924	3R_20819924_SNP [dm3] 3R_24994202_SNP [dm6]	C	A	3.416e^-4	0.661	INTRON tnc
3R	13682475	3R_13682475_SNP [dm3] 3R_17856753_SNP [dm6]	G	A	3.419e^-4	0.661	INTRON tinc
X	10100908	X_10100908_SNP [dm3] X_10206875_SNP [dm6]	C	A	3.423e^-4	0.661	UTR_3_PRIME CG15309 INTRON CR44894
3R	6752684	3R_6752684_SNP [dm3] 3R_10926962_SNP [dm6]	T	C	3.423e^-4	0.661	INTERGENIC
3R	8485759	3R_8485759_SNP [dm3] 3R_12660037_SNP [dm6]	T	A	3.424e^-4	0.661	INTRON CG6225	TF binding site mE1_TFBS_cad
3R	9817323	3R_9817323_SNP [dm3] 3R_13991601_SNP [dm6]	T	A	3.427e^-4	0.661	INTRON rdx
3R	15676912	3R_15676912_SNP [dm3] 3R_19851190_SNP [dm6]	A	C	3.445e^-4	0.662	INTRON CG4662
3L	11580832	3L_11580832_SNP [dm3] 3L_11587732_SNP [dm6]	A	G	3.449e^-4	0.662	UTR_5_PRIME rt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	20187373	3L_20187373_SNP [dm3] 3L_20194273_SNP [dm6]	G	T	3.451e^-4	0.662	INTRON CG42674
2R	9147482	2R_9147482_SNP [dm3] 2R_13259977_SNP [dm6]	A	G	3.452e^-4	0.662	UPSTREAM CG42319 INTERGENIC
3R	25588806	3R_25588806_SNP [dm3] 3R_29763084_SNP [dm6]	A	G	3.453e^-4	0.662	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11841480	3L_11841480_SNP [dm3] 3L_11848380_SNP [dm6]	T	C	3.467e^-4	0.662	UPSTREAM CG12521 INTERGENIC
2L	11686631	2L_11686631_DEL [dm3] 2L_11686631_DEL [dm6]	ATTACAGGTAATA...	T	3.470e^-4	0.662	INTERGENIC
2L	19798779	2L_19798779_SNP [dm3] 2L_19798779_SNP [dm6]	C	A	3.471e^-4	0.662	INTRON sick
3L	11584053	3L_11584053_SNP [dm3] 3L_11590953_SNP [dm6]	T	C	3.471e^-4	0.662	SYNONYMOUS_CODING CG33268 DOWNSTREAM CG7377
2R	1677769	2R_1677769_SNP [dm3] 2R_5790264_SNP [dm6]	T	G	3.476e^-4	0.662	INTERGENIC
2L	1858514	2L_1858514_SNP [dm3] 2L_1858514_SNP [dm6]	T	A	3.477e^-4	0.662	UTR_3_PRIME wry DOWNSTREAM CG31663
2L	19835447	2L_19835447_DEL [dm3] 2L_19835447_DEL [dm6]	TT	T	3.483e^-4	0.662	INTRON sick
2R	8151058	2R_8151058_SNP [dm3] 2R_12263553_SNP [dm6]	G	A	3.486e^-4	0.662	UPSTREAM Cam INTRON Cam
2L	19469132	2L_19469132_SNP [dm3] 2L_19469132_SNP [dm6]	T	A	3.491e^-4	0.662	DOWNSTREAM CR45723 EXON CR45722
3L	14489459	3L_14489459_SNP [dm3] 3L_14496359_SNP [dm6]	G	C	3.502e^-4	0.662	INTRON bbg	TF binding site mE1_TFBS_cad
X	17911160	X_17911160_SNP [dm3] X_18017127_SNP [dm6]	A	G	3.507e^-4	0.662	INTRON Sh
2L	15031125	2L_15031125_SNP [dm3] 2L_15031125_SNP [dm6]	C	T	3.511e^-4	0.662	INTRON GABA-B-R1 & 1 other
2R	16624012	2R_16624012_SNP [dm3] 2R_20736507_SNP [dm6]	C	T	3.513e^-4	0.662	INTRON dpr
X	2932428	X_2932428_SNP [dm3] X_3038395_SNP [dm6]	T	C	3.514e^-4	0.662	INTRON kirre
2R	8132873	2R_8132873_SNP [dm3] 2R_12245368_SNP [dm6]	C	A	3.516e^-4	0.662	UPSTREAM CG43244 INTERGENIC
2R	10417824	2R_10417824_SNP [dm3] 2R_14530319_SNP [dm6]	A	G	3.527e^-4	0.662	INTRON ttv
2R	3665703	2R_3665703_SNP [dm3] 2R_7778198_SNP [dm6]	T	G	3.530e^-4	0.662	INTRON CG30497 & 1 other
3R	24132771	3R_24132771_SNP [dm3] 3R_28307049_SNP [dm6]	T	A	3.534e^-4	0.662	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	19813713	2L_19813713_SNP [dm3] 2L_19813713_SNP [dm6]	A	G	3.535e^-4	0.662	UTR_3_PRIME CG13962 DOWNSTREAM CG13962 & 1 other INTRON sick
X	13026419	X_13026419_SNP [dm3] X_13132386_SNP [dm6]	A	T	3.536e^-4	0.662	INTRON MFS10 & 1 other
2R	12059294	2R_12059294_SNP [dm3] 2R_16171789_SNP [dm6]	A	G	3.536e^-4	0.662	SYNONYMOUS_CODING Ptp52F UPSTREAM CG8435	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	16989117	3R_16989117_SNP [dm3] 3R_21163395_SNP [dm6]	A	T	3.536e^-4	0.662	UPSTREAM CG5810 INTRON SNF4Agamma
3R	12958523	3R_12958523_SNP [dm3] 3R_17132801_SNP [dm6]	G	A	3.537e^-4	0.662	SYNONYMOUS_CODING CG31266 UPSTREAM CG4053	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.590e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.04742
In_3R_K	0.08720

Kruskal-Wallis test

Covariate	χ²	p-value
In_2L_t	5.2719	0.0717
In_3R_K	5.5609	0.062
In_3R_Mo	5.8878	0.0527

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2578 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	5.314e^-8	0.1	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5115825	X_5115825_SNP [dm3] X_5221792_SNP [dm6]	A	G	6.297e^-7	0.384	INTRON CG15465 & 1 other
2L	15281202	2L_15281202_DEL [dm3] 2L_15281202_DEL [dm6]	CC	T	7.360e^-7	0.384	DOWNSTREAM CR45349 INTERGENIC
3L	4737896	3L_4737896_SNP [dm3] 3L_4737896_SNP [dm6]	G	A	9.292e^-7	0.384	INTRON RhoGEF64C
X	21160839	X_21160839_SNP [dm3] X_21289812_SNP [dm6]	T	C	1.025e^-6	0.384	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4737895	3L_4737895_SNP [dm3] 3L_4737895_SNP [dm6]	A	G	1.246e^-6	0.389	INTRON RhoGEF64C
X	21160844	X_21160844_SNP [dm3] X_21289817_SNP [dm6]	G	C	2.567e^-6	0.649	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9638379	X_9638379_SNP [dm3] X_9744346_SNP [dm6]	T	C	3.319e^-6	0.649	INTRON Sp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13570329	3R_13570329_SNP [dm3] 3R_17744607_SNP [dm6]	A	C	3.480e^-6	0.649	INTRON TyrRII	TF binding site mE1_TFBS_cad
3L	7479975	3L_7479975_SNP [dm3] 3L_7486875_SNP [dm6]	T	C	3.723e^-6	0.649	SYNONYMOUS_CODING mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4647084	3L_4647084_INS [dm3] 3L_4647084_INS [dm6]	T	TC	3.809e^-6	0.649	INTRON axo
X	21063578	X_21063578_SNP [dm3] X_21192551_SNP [dm6]	G	A	4.791e^-6	0.666	UPSTREAM CG14579 INTERGENIC
2L	13626041	2L_13626041_SNP [dm3] 2L_13626041_SNP [dm6]	G	A	5.457e^-6	0.666	INTRON kuz
3L	6100199	3L_6100199_SNP [dm3] 3L_6107099_SNP [dm6]	C	T	5.573e^-6	0.666	INTRON Ets65A	TF binding site mE1_TFBS_cad
X	10543785	X_10543785_SNP [dm3] X_10649752_SNP [dm6]	T	C	5.761e^-6	0.666	INTRON X11Lbeta
3L	12792354	3L_12792354_SNP [dm3] 3L_12799254_SNP [dm6]	T	G	6.162e^-6	0.666	INTRON Atg1
3L	4737859	3L_4737859_SNP [dm3] 3L_4737859_SNP [dm6]	A	G	6.758e^-6	0.666	INTRON RhoGEF64C
X	2926734	X_2926734_SNP [dm3] X_3032701_SNP [dm6]	C	A	6.850e^-6	0.666	INTRON kirre
2L	15281222	2L_15281222_SNP [dm3] 2L_15281222_SNP [dm6]	A	G	7.117e^-6	0.666	DOWNSTREAM CR45349 INTERGENIC
X	2926031	X_2926031_SNP [dm3] X_3031998_SNP [dm6]	C	A	7.401e^-6	0.666	INTRON kirre
3L	12615746	3L_12615746_MNP [dm3] 3L_12622646_MNP [dm6]	GAA	AGC	7.510e^-6	0.666	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12792346	3L_12792346_SNP [dm3] 3L_12799246_SNP [dm6]	G	C	8.076e^-6	0.666	INTRON Atg1
2R	4950454	2R_4950454_SNP [dm3] 2R_9062949_SNP [dm6]	G	A	8.277e^-6	0.666	INTRON ana	regulatory region REDfly_CRMs
X	4764291	X_4764291_SNP [dm3] X_4870258_SNP [dm6]	T	C	8.815e^-6	0.666	INTRON CG42594
3R	5709131	3R_5709131_SNP [dm3] 3R_9883409_SNP [dm6]	C	G	9.405e^-6	0.666	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12971257	3R_12971257_SNP [dm3] 3R_17145535_SNP [dm6]	A	C	9.585e^-6	0.666	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3R	12971260	3R_12971260_DEL [dm3] 3R_17145538_DEL [dm6]	AGGTAAGCATCCTA...	G	9.585e^-6	0.666	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
2L	14689608	2L_14689608_SNP [dm3] 2L_14689608_SNP [dm6]	A	G	1.022e^-5	0.667	UPSTREAM osp INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	15743118	2R_15743118_SNP [dm3] 2R_19855613_SNP [dm6]	T	C	1.098e^-5	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	551174	3L_551174_SNP [dm3] 3L_551174_SNP [dm6]	T	A	1.139e^-5	0.667	INTRON hipk	TF binding site BDTNP1_TFBS_dl
X	9778558	X_9778558_SNP [dm3] X_9884525_SNP [dm6]	T	A	1.155e^-5	0.667	SYNONYMOUS_CODING CG9691 DOWNSTREAM CG9689
X	13828560	X_13828560_SNP [dm3] X_13934527_SNP [dm6]	C	A	1.178e^-5	0.667	INTRON mamo	TF binding site mE1_TFBS_HSA
X	1931082	X_1931082_SNP [dm3] X_2037049_SNP [dm6]	A	G	1.178e^-5	0.667	UPSTREAM Actn INTRON Actn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	428271	3L_428271_SNP [dm3] 3L_428271_SNP [dm6]	T	A	1.233e^-5	0.667	INTERGENIC
2L	14695058	2L_14695058_SNP [dm3] 2L_14695058_SNP [dm6]	G	A	1.245e^-5	0.667	INTERGENIC
3L	412583	3L_412583_SNP [dm3] 3L_412583_SNP [dm6]	G	T	1.355e^-5	0.698	INTERGENIC
3L	6100247	3L_6100247_SNP [dm3] 3L_6107147_SNP [dm6]	C	T	1.402e^-5	0.698	INTRON Ets65A	TF binding site mE1_TFBS_cad
3L	12615738	3L_12615738_SNP [dm3] 3L_12622638_SNP [dm6]	C	G	1.434e^-5	0.698	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	21930162	X_21930162_SNP [dm3] X_22528326_SNP [dm6]	C	T	1.585e^-5	0.698	SYNONYMOUS_CODING CG17600
3L	7479886	3L_7479886_SNP [dm3] 3L_7486786_SNP [dm6]	C	T	1.626e^-5	0.698	INTRON mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16289150	2R_16289150_SNP [dm3] 2R_20401645_SNP [dm6]	G	A	1.745e^-5	0.698	INTERGENIC
2R	9147422	2R_9147422_SNP [dm3] 2R_13259917_SNP [dm6]	A	T	1.851e^-5	0.698	UPSTREAM CG42319 INTERGENIC
X	2814871	X_2814871_INS [dm3] X_2920838_INS [dm6]	T	TTT	1.865e^-5	0.698	INTRON kirre & 1 other
X	2814875	X_2814875_SNP [dm3] X_2920842_SNP [dm6]	T	C	1.865e^-5	0.698	INTRON kirre & 1 other
2L	13720507	2L_13720507_SNP [dm3] 2L_13720507_SNP [dm6]	G	T	1.877e^-5	0.698	INTERGENIC
2R	9147438	2R_9147438_SNP [dm3] 2R_13259933_SNP [dm6]	G	A	1.945e^-5	0.698	UPSTREAM CG42319 INTERGENIC
2L	15281172	2L_15281172_SNP [dm3] 2L_15281172_SNP [dm6]	G	A	1.973e^-5	0.698	DOWNSTREAM CR45349 INTERGENIC
3R	11322549	3R_11322549_SNP [dm3] 3R_15496827_SNP [dm6]	T	C	1.976e^-5	0.698	INTERGENIC
2L	19802428	2L_19802428_SNP [dm3] 2L_19802428_SNP [dm6]	A	G	1.980e^-5	0.698	INTRON sick
2L	12260510	2L_12260510_SNP [dm3] 2L_12260510_SNP [dm6]	T	C	2.063e^-5	0.698	INTRON aret
2R	6588312	2R_6588312_SNP [dm3] 2R_10700807_SNP [dm6]	G	C	2.093e^-5	0.698	INTRON stan
2L	14702724	2L_14702724_SNP [dm3] 2L_14702724_SNP [dm6]	C	G	2.200e^-5	0.698	INTERGENIC
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	2.204e^-5	0.698	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	22306203	2L_22306203_SNP [dm3] 2L_22306203_SNP [dm6]	T	C	2.219e^-5	0.698	INTERGENIC
2R	12696827	2R_12696827_SNP [dm3] 2R_16809322_SNP [dm6]	C	A	2.372e^-5	0.698	INTERGENIC
3L	502675	3L_502675_SNP [dm3] 3L_502675_SNP [dm6]	T	C	2.429e^-5	0.698	INTRON klar
3L	4737892	3L_4737892_SNP [dm3] 3L_4737892_SNP [dm6]	T	C	2.460e^-5	0.698	INTRON RhoGEF64C
3R	4400876	3R_4400876_INS [dm3] 3R_8575154_INS [dm6]	T	TT	2.502e^-5	0.698	INTERGENIC
3L	7480613	3L_7480613_SNP [dm3] 3L_7487513_SNP [dm6]	A	G	2.505e^-5	0.698	INTRON mthl6
2L	15031960	2L_15031960_SNP [dm3] 2L_15031960_SNP [dm6]	T	G	2.519e^-5	0.698	UPSTREAM CG31832 INTRON GABA-B-R1
2R	11330036	2R_11330036_SNP [dm3] 2R_15442531_SNP [dm6]	G	C	2.561e^-5	0.698	INTRON CG43729
2R	6588137	2R_6588137_SNP [dm3] 2R_10700632_SNP [dm6]	C	T	2.578e^-5	0.698	INTRON stan
3L	21386998	3L_21386998_SNP [dm3] 3L_21393898_SNP [dm6]	G	A	2.628e^-5	0.698	INTRON rgn
2L	7025296	2L_7025296_SNP [dm3] 2L_7025296_SNP [dm6]	C	A	2.645e^-5	0.698	NON_SYNONYMOUS_CODING CG31908	TF binding site mE1_TFBS_cad
2L	19802421	2L_19802421_SNP [dm3] 2L_19802421_SNP [dm6]	A	C	2.690e^-5	0.698	INTRON sick
3L	952114	3L_952114_SNP [dm3] 3L_952114_SNP [dm6]	T	C	2.707e^-5	0.698	INTRON Glut1
2L	1604344	2L_1604344_SNP [dm3] 2L_1604344_SNP [dm6]	G	A	2.717e^-5	0.698	SPLICE_SITE_REGION haf INTRON CG31935 & 1 other
2R	15459606	2R_15459606_SNP [dm3] 2R_19572101_SNP [dm6]	T	G	2.749e^-5	0.698	INTRON sm
X	9775935	X_9775935_SNP [dm3] X_9881902_SNP [dm6]	C	T	2.791e^-5	0.698	UPSTREAM CG9689 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	5137887	3R_5137887_SNP [dm3] 3R_9312165_SNP [dm6]	A	G	2.817e^-5	0.698	INTRON CG8861
3L	7480667	3L_7480667_SNP [dm3] 3L_7487567_SNP [dm6]	A	G	2.923e^-5	0.698	SYNONYMOUS_CODING mthl6
2R	9147435	2R_9147435_SNP [dm3] 2R_13259930_SNP [dm6]	T	A	2.962e^-5	0.698	UPSTREAM CG42319 INTERGENIC
3R	25973021	3R_25973021_SNP [dm3] 3R_30147299_SNP [dm6]	T	C	2.985e^-5	0.698	INTRON AdoR
3L	22701905	3L_22701905_SNP [dm3] 3L_22708805_SNP [dm6]	C	A	2.991e^-5	0.698	INTERGENIC
X	4094020	X_4094020_SNP [dm3] X_4199987_SNP [dm6]	T	C	3.040e^-5	0.698	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	378373	2L_378373_SNP [dm3] 2L_378373_SNP [dm6]	A	T	3.079e^-5	0.698	UTR_5_PRIME al	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	8452388	2L_8452388_SNP [dm3] 2L_8452388_SNP [dm6]	G	T	3.083e^-5	0.698	UPSTREAM fu12 INTRON fu12
3R	2868311	3R_2868311_INS [dm3] 3R_7042589_INS [dm6]	C	CGGA	3.107e^-5	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	11330161	2R_11330161_SNP [dm3] 2R_15442656_SNP [dm6]	G	A	3.119e^-5	0.698	INTRON CG43729
3R	12970762	3R_12970762_SNP [dm3] 3R_17145040_SNP [dm6]	A	T	3.172e^-5	0.698	UTR_3_PRIME m-cup DOWNSTREAM m-cup
2L	4512888	2L_4512888_SNP [dm3] 2L_4512888_SNP [dm6]	G	A	3.222e^-5	0.698	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12896052	2L_12896052_SNP [dm3] 2L_12896052_SNP [dm6]	T	C	3.272e^-5	0.698	INTERGENIC
3L	14811233	3L_14811233_SNP [dm3] 3L_14818133_SNP [dm6]	C	T	3.304e^-5	0.698	INTRON CG17839
2R	13950559	2R_13950559_SNP [dm3] 2R_18063054_SNP [dm6]	A	T	3.353e^-5	0.698	INTRON CG34386
3L	14561384	3L_14561384_SNP [dm3] 3L_14568284_SNP [dm6]	G	A	3.363e^-5	0.698	DOWNSTREAM CG42758 INTERGENIC
X	17321363	X_17321363_SNP [dm3] X_17427330_SNP [dm6]	A	C	3.440e^-5	0.698	INTRON CG12994 & 1 other	TF binding site mE1_TFBS_D
X	18659700	X_18659700_SNP [dm3] X_18765667_SNP [dm6]	A	T	3.454e^-5	0.698	INTRON CCKLR-17D3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	387696	2L_387696_SNP [dm3] 2L_387696_SNP [dm6]	T	A	3.468e^-5	0.698	DOWNSTREAM al INTERGENIC
3L	14817336	3L_14817336_SNP [dm3] 3L_14824236_SNP [dm6]	G	A	3.505e^-5	0.698	INTRON CG17839
3L	12148122	3L_12148122_SNP [dm3] 3L_12155022_SNP [dm6]	C	T	3.511e^-5	0.698	SYNONYMOUS_CODING Nrx-IV	TF binding site mE1_TFBS_sens
3L	4737951	3L_4737951_SNP [dm3] 3L_4737951_SNP [dm6]	C	A	3.559e^-5	0.698	INTRON RhoGEF64C
X	21930168	X_21930168_SNP [dm3] X_22528332_SNP [dm6]	T	G	3.706e^-5	0.698	SYNONYMOUS_CODING CG17600
3R	17942119	3R_17942119_SNP [dm3] 3R_22116397_SNP [dm6]	G	C	3.739e^-5	0.698	NON_SYNONYMOUS_CODING Ir94b
3R	24485802	3R_24485802_SNP [dm3] 3R_28660080_SNP [dm6]	A	G	3.800e^-5	0.698	INTERGENIC
X	8291487	X_8291487_SNP [dm3] X_8397454_SNP [dm6]	T	A	3.857e^-5	0.698	UTR_3_PRIME CG15345
2R	6588083	2R_6588083_SNP [dm3] 2R_10700578_SNP [dm6]	G	C	3.882e^-5	0.698	INTRON stan
3L	6100265	3L_6100265_SNP [dm3] 3L_6107165_SNP [dm6]	C	T	3.886e^-5	0.698	INTRON Ets65A	TF binding site mE1_TFBS_cad
2R	9147155	2R_9147155_SNP [dm3] 2R_13259650_SNP [dm6]	A	T	3.911e^-5	0.698	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3L	6100256	3L_6100256_SNP [dm3] 3L_6107156_SNP [dm6]	A	C	4.040e^-5	0.698	INTRON Ets65A	TF binding site mE1_TFBS_cad
3L	12615764	3L_12615764_SNP [dm3] 3L_12622664_SNP [dm6]	T	A	4.056e^-5	0.698	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17590899	2R_17590899_SNP [dm3] 2R_21703394_SNP [dm6]	G	A	4.059e^-5	0.698	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
2R	6796436	2R_6796436_SNP [dm3] 2R_10908931_SNP [dm6]	C	T	4.081e^-5	0.698	UPSTREAM Obp47a INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5559719	2L_5559719_SNP [dm3] 2L_5559719_SNP [dm6]	T	C	4.158e^-5	0.698	SYNONYMOUS_CODING GluRIIB DOWNSTREAM GluRIIA	TF binding site mE1_TFBS_inv
3R	25570656	3R_25570656_SNP [dm3] 3R_29744934_SNP [dm6]	G	A	4.177e^-5	0.698	SYNONYMOUS_CODING CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9147482	2R_9147482_SNP [dm3] 2R_13259977_SNP [dm6]	A	G	4.246e^-5	0.698	UPSTREAM CG42319 INTERGENIC
3L	13339531	3L_13339531_SNP [dm3] 3L_13346431_SNP [dm6]	G	T	4.294e^-5	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19835455	2L_19835455_SNP [dm3] 2L_19835455_SNP [dm6]	A	C	4.358e^-5	0.698	INTRON sick
2R	12278778	2R_12278778_SNP [dm3] 2R_16391273_SNP [dm6]	G	A	4.364e^-5	0.698	INTRON Sema-2b	TF binding site mE1_TFBS_chinmo
2L	10482563	2L_10482563_SNP [dm3] 2L_10482563_SNP [dm6]	C	A	4.367e^-5	0.698	NON_SYNONYMOUS_CODING RluA-2 UTR_3_PRIME RluA-2 UPSTREAM Grip75	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	18125910	2L_18125910_SNP [dm3] 2L_18125910_SNP [dm6]	C	A	4.416e^-5	0.698	UPSTREAM CG31785 INTRON CG5758
X	5229317	X_5229317_SNP [dm3] X_5335284_SNP [dm6]	C	T	4.429e^-5	0.698	DOWNSTREAM CanB INTERGENIC
2R	11330066	2R_11330066_SNP [dm3] 2R_15442561_SNP [dm6]	G	T	4.439e^-5	0.698	INTRON CG43729
3L	3680402	3L_3680402_SNP [dm3] 3L_3680402_SNP [dm6]	T	C	4.536e^-5	0.698	INTERGENIC
3L	546794	3L_546794_SNP [dm3] 3L_546794_SNP [dm6]	C	T	4.589e^-5	0.698	INTRON hipk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	17891617	2L_17891617_SNP [dm3] 2L_17891617_SNP [dm6]	C	T	4.599e^-5	0.698	INTERGENIC
X	11727403	X_11727403_SNP [dm3] X_11833370_SNP [dm6]	A	T	4.665e^-5	0.698	UTR_3_PRIME rudhira INTRON rudhira
3L	11168307	3L_11168307_SNP [dm3] 3L_11175207_SNP [dm6]	T	A	4.706e^-5	0.698	INTRON CG14142
3L	14817116	3L_14817116_SNP [dm3] 3L_14824016_SNP [dm6]	A	T	4.835e^-5	0.698	INTRON CG17839
X	5462305	X_5462305_INS [dm3] X_5568272_INS [dm6]	A	ACACA	4.854e^-5	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	11790376	3L_11790376_SNP [dm3] 3L_11797276_SNP [dm6]	A	G	4.855e^-5	0.698	SYNONYMOUS_CODING Klp68D	TF binding site BDTNP1_TFBS_prd
2R	14087396	2R_14087396_SNP [dm3] 2R_18199891_SNP [dm6]	T	C	4.870e^-5	0.698	INTERGENIC
2R	14326001	2R_14326001_SNP [dm3] 2R_18438496_SNP [dm6]	G	T	4.981e^-5	0.698	INTRON CG30118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11330698	2R_11330698_SNP [dm3] 2R_15443193_SNP [dm6]	G	T	4.987e^-5	0.698	INTRON CG43729
3L	712348	3L_712348_SNP [dm3] 3L_712348_SNP [dm6]	G	T	5.041e^-5	0.698	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	11727955	X_11727955_SNP [dm3] X_11833922_SNP [dm6]	A	G	5.049e^-5	0.698	UTR_3_PRIME rudhira DOWNSTREAM rudhira INTRON rudhira
3L	411206	3L_411206_INS [dm3] 3L_411206_INS [dm6]	C	CA	5.130e^-5	0.698	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2554105	X_2554105_SNP [dm3] X_2660072_SNP [dm6]	T	C	5.159e^-5	0.698	SYNONYMOUS_CODING sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2645600	3L_2645600_SNP [dm3] 3L_2645600_SNP [dm6]	A	T	5.193e^-5	0.698	INTRON CG1143	TF binding site mE1_TFBS_cad
2L	5502565	2L_5502565_SNP [dm3] 2L_5502565_SNP [dm6]	T	A	5.296e^-5	0.698	INTERGENIC	TF binding site mE1_TFBS_cad
2L	14686016	2L_14686016_SNP [dm3] 2L_14686016_SNP [dm6]	A	G	5.297e^-5	0.698	INTRON osp
2L	7057433	2L_7057433_SNP [dm3] 2L_7057433_SNP [dm6]	C	T	5.340e^-5	0.698	SYNONYMOUS_CODING Mnn1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	712385	3L_712385_DEL [dm3] 3L_712385_DEL [dm6]	TA	T	5.399e^-5	0.698	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	8388326	3R_8388326_SNP [dm3] 3R_12562604_SNP [dm6]	C	T	5.549e^-5	0.698	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
3L	712384	3L_712384_SNP [dm3] 3L_712384_SNP [dm6]	T	C	5.562e^-5	0.698	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	6016574	2R_6016574_SNP [dm3] 2R_10129069_SNP [dm6]	G	A	5.608e^-5	0.698	INTRON gem	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	555575	3L_555575_SNP [dm3] 3L_555575_SNP [dm6]	C	A	5.611e^-5	0.698	INTRON hipk
3L	17891665	3L_17891665_SNP [dm3] 3L_17898565_SNP [dm6]	G	A	5.627e^-5	0.698	DOWNSTREAM Prestin INTERGENIC
2R	15100187	2R_15100187_SNP [dm3] 2R_19212682_SNP [dm6]	C	T	5.644e^-5	0.698	INTRON hppy	TF binding site mE1_TFBS_inv
X	13136787	X_13136787_SNP [dm3] X_13242754_SNP [dm6]	C	T	5.660e^-5	0.698	INTRON mew	TF binding site BDTNP1_TFBS_da
3L	13872343	3L_13872343_SNP [dm3] 3L_13879243_SNP [dm6]	G	A	5.673e^-5	0.698	INTRON dysc & 1 other
2L	19841437	2L_19841437_SNP [dm3] 2L_19841437_SNP [dm6]	G	A	5.762e^-5	0.698	INTRON sick
3L	14813879	3L_14813879_SNP [dm3] 3L_14820779_SNP [dm6]	A	T	5.765e^-5	0.698	INTRON CG17839
X	13137037	X_13137037_SNP [dm3] X_13243004_SNP [dm6]	C	T	5.839e^-5	0.698	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	9185141	3L_9185141_SNP [dm3] 3L_9192041_SNP [dm6]	T	C	5.913e^-5	0.698	INTERGENIC
2R	18278806	2R_18278806_SNP [dm3] 2R_22391301_SNP [dm6]	A	G	5.989e^-5	0.698	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	2868309	3R_2868309_SNP [dm3] 3R_7042587_SNP [dm6]	G	A	6.012e^-5	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	14817946	3L_14817946_SNP [dm3] 3L_14824846_SNP [dm6]	A	G	6.033e^-5	0.698	INTRON CG17839
3L	16552822	3L_16552822_SNP [dm3] 3L_16559722_SNP [dm6]	T	A	6.121e^-5	0.698	INTERGENIC
X	18636906	X_18636906_SNP [dm3] X_18742873_SNP [dm6]	C	T	6.132e^-5	0.698	INTERGENIC
3R	4340520	3R_4340520_SNP [dm3] 3R_8514798_SNP [dm6]	T	A	6.195e^-5	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	9377453	3L_9377453_SNP [dm3] 3L_9384353_SNP [dm6]	T	C	6.271e^-5	0.698	SYNONYMOUS_CODING Hsp27	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	712376	3L_712376_SNP [dm3] 3L_712376_SNP [dm6]	G	A	6.273e^-5	0.698	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	11576600	2R_11576600_SNP [dm3] 2R_15689095_SNP [dm6]	G	T	6.287e^-5	0.698	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	412168	3L_412168_SNP [dm3] 3L_412168_SNP [dm6]	G	A	6.291e^-5	0.698	INTERGENIC
2L	19840286	2L_19840286_SNP [dm3] 2L_19840286_SNP [dm6]	C	A	6.352e^-5	0.698	INTRON sick
3L	6100268	3L_6100268_SNP [dm3] 3L_6107168_SNP [dm6]	G	C	6.385e^-5	0.698	INTRON Ets65A	TF binding site mE1_TFBS_cad
2R	18985584	2R_18985584_SNP [dm3] 2R_23098061_SNP [dm6]	T	C	6.449e^-5	0.698	INTERGENIC
2R	8134266	2R_8134266_SNP [dm3] 2R_12246761_SNP [dm6]	C	T	6.479e^-5	0.698	EXON CR44315
3L	11132888	3L_11132888_SNP [dm3] 3L_11139788_SNP [dm6]	G	A	6.500e^-5	0.698	INTRON CG32082
2L	19874297	2L_19874297_SNP [dm3] 2L_19874297_SNP [dm6]	G	A	6.588e^-5	0.698	INTRON sick	TF binding site mE1_TFBS_cad
X	3599377	X_3599377_SNP [dm3] X_3705344_SNP [dm6]	G	T	6.599e^-5	0.698	UTR_3_PRIME Rala
3R	24412989	3R_24412989_SNP [dm3] 3R_28587267_SNP [dm6]	T	C	6.686e^-5	0.698	EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	2537851	3L_2537851_SNP [dm3] 3L_2537851_SNP [dm6]	G	T	6.749e^-5	0.698	INTRON Spn
2L	18125877	2L_18125877_INS [dm3] 2L_18125877_INS [dm6]	T	TT	6.751e^-5	0.698	UPSTREAM CG31785 INTRON CG5758
2L	4016813	2L_4016813_SNP [dm3] 2L_4016813_SNP [dm6]	T	C	6.779e^-5	0.698	INTERGENIC
X	13137038	X_13137038_SNP [dm3] X_13243005_SNP [dm6]	A	G	6.788e^-5	0.698	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9580759	2L_9580759_SNP [dm3] 2L_9580759_SNP [dm6]	G	A	6.807e^-5	0.698	SYNONYMOUS_CODING gcm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	11728415	3L_11728415_SNP [dm3] 3L_11735315_SNP [dm6]	C	T	6.811e^-5	0.698	UTR_3_PRIME CG6024 DOWNSTREAM CG6024
3L	20955869	3L_20955869_SNP [dm3] 3L_20962769_SNP [dm6]	G	T	6.891e^-5	0.698	UTR_3_PRIME CG12983 UPSTREAM CG10587	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	14618452	3R_14618452_SNP [dm3] 3R_18792730_SNP [dm6]	G	A	6.928e^-5	0.698	UPSTREAM CG7720 INTRON CG7720
3L	2647828	3L_2647828_SNP [dm3] 3L_2647828_SNP [dm6]	A	G	6.935e^-5	0.698	UPSTREAM CG1246 DOWNSTREAM CG1143 INTERGENIC
3L	13310290	3L_13310290_SNP [dm3] 3L_13317190_SNP [dm6]	T	G	6.959e^-5	0.698	INTERGENIC
2R	13763940	2R_13763940_SNP [dm3] 2R_17876435_SNP [dm6]	G	A	7.010e^-5	0.698	INTRON Elk
3R	15083555	3R_15083555_SNP [dm3] 3R_19257833_SNP [dm6]	T	G	7.044e^-5	0.698	NON_SYNONYMOUS_CODING CG14280	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19504761	2R_19504761_SNP [dm3] 2R_23617238_SNP [dm6]	T	C	7.141e^-5	0.698	UPSTREAM CG17664 INTERGENIC	TF binding site mE1_TFBS_sens
3R	4777980	3R_4777980_SNP [dm3] 3R_8952258_SNP [dm6]	C	T	7.194e^-5	0.698	SYNONYMOUS_CODING CG11966	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19508715	2R_19508715_SNP [dm3] 2R_23621192_SNP [dm6]	C	T	7.212e^-5	0.698	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	7.343e^-5	0.698	EXON CR44950
2R	11330408	2R_11330408_SNP [dm3] 2R_15442903_SNP [dm6]	C	T	7.348e^-5	0.698	INTRON CG43729
3L	9377935	3L_9377935_SNP [dm3] 3L_9384835_SNP [dm6]	A	G	7.369e^-5	0.698	UTR_3_PRIME Hsp27 DOWNSTREAM CR43483	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	1601351	2R_1601351_SNP [dm3] 2R_5713846_SNP [dm6]	C	T	7.513e^-5	0.698	INTRON ap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13549841	3L_13549841_SNP [dm3] 3L_13556741_SNP [dm6]	A	G	7.560e^-5	0.698	INTRON bru-3
2R	19512434	2R_19512434_SNP [dm3] 2R_23624911_SNP [dm6]	A	C	7.580e^-5	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	41504	3L_41504_SNP [dm3] 3L_41504_SNP [dm6]	A	G	7.595e^-5	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6669458	2R_6669458_SNP [dm3] 2R_10781953_SNP [dm6]	T	A	7.640e^-5	0.698	UPSTREAM CR44299 INTRON CG33144	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	19802446	2L_19802446_SNP [dm3] 2L_19802446_SNP [dm6]	A	G	7.643e^-5	0.698	INTRON sick
3R	19126952	3R_19126952_SNP [dm3] 3R_23301230_SNP [dm6]	G	A	7.701e^-5	0.698	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11722638	3L_11722638_SNP [dm3] 3L_11729538_SNP [dm6]	G	A	7.764e^-5	0.698	SYNONYMOUS_CODING CG32088
X	1930114	X_1930114_SNP [dm3] X_2036081_SNP [dm6]	T	A	7.773e^-5	0.698	INTRON Actn	TF binding site BDTNP1_TFBS_dl
3R	15077609	3R_15077609_SNP [dm3] 3R_19251887_SNP [dm6]	C	A	7.822e^-5	0.698	INTERGENIC
3L	15625591	3L_15625591_INS [dm3] 3L_15632491_INS [dm6]	T	TT	7.850e^-5	0.698	UTR_5_PRIME comm3 INTRON comm3
3L	20959207	3L_20959207_SNP [dm3] 3L_20966107_SNP [dm6]	T	C	7.915e^-5	0.698	NON_SYNONYMOUS_CODING CG12983 DOWNSTREAM CG33287 INTRON CG12983
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	7.946e^-5	0.698	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
X	21921583	X_21921583_SNP [dm3] X_22519747_SNP [dm6]	T	G	7.953e^-5	0.698	INTRON CG17600
3L	4373691	3L_4373691_SNP [dm3] 3L_4373691_SNP [dm6]	A	C	8.008e^-5	0.698	INTRON DopEcR
2L	5446066	2L_5446066_SNP [dm3] 2L_5446066_SNP [dm6]	G	A	8.036e^-5	0.698	INTERGENIC
2L	5446068	2L_5446068_SNP [dm3] 2L_5446068_SNP [dm6]	A	T	8.036e^-5	0.698	INTERGENIC
2L	5446069	2L_5446069_SNP [dm3] 2L_5446069_SNP [dm6]	T	G	8.036e^-5	0.698	INTERGENIC
2L	5446078	2L_5446078_SNP [dm3] 2L_5446078_SNP [dm6]	T	G	8.036e^-5	0.698	INTERGENIC
X	2926643	X_2926643_SNP [dm3] X_3032610_SNP [dm6]	C	T	8.040e^-5	0.698	INTRON kirre
3L	11789578	3L_11789578_SNP [dm3] 3L_11796478_SNP [dm6]	G	A	8.084e^-5	0.698	SYNONYMOUS_CODING Klp68D	TF binding site mE1_TFBS_sens
2L	5446064	2L_5446064_SNP [dm3] 2L_5446064_SNP [dm6]	G	T	8.106e^-5	0.698	INTERGENIC
2L	14011430	2L_14011430_SNP [dm3] 2L_14011430_SNP [dm6]	G	A	8.179e^-5	0.698	UPSTREAM tRNA:Q:34E INTERGENIC
2L	3795179	2L_3795179_SNP [dm3] 2L_3795179_SNP [dm6]	G	A	8.230e^-5	0.698	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8702856	2L_8702856_SNP [dm3] 2L_8702856_SNP [dm6]	A	T	8.250e^-5	0.698	UPSTREAM CR44992 INTRON Hnf4
3R	4342921	3R_4342921_SNP [dm3] 3R_8517199_SNP [dm6]	C	T	8.286e^-5	0.698	UPSTREAM CG11737 INTERGENIC
3R	13600672	3R_13600672_SNP [dm3] 3R_17774950_SNP [dm6]	C	T	8.374e^-5	0.698	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7479848	3L_7479848_SNP [dm3] 3L_7486748_SNP [dm6]	C	A	8.456e^-5	0.698	SPLICE_SITE_REGION mthl6 INTRON mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	711790	3L_711790_SNP [dm3] 3L_711790_SNP [dm6]	A	T	8.464e^-5	0.698	UTR_5_PRIME CG13896	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	7479945	3L_7479945_SNP [dm3] 3L_7486845_SNP [dm6]	T	C	8.468e^-5	0.698	SYNONYMOUS_CODING mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2926636	X_2926636_SNP [dm3] X_3032603_SNP [dm6]	T	A	8.534e^-5	0.698	INTRON kirre
2L	18125935	2L_18125935_SNP [dm3] 2L_18125935_SNP [dm6]	C	A	8.554e^-5	0.698	UPSTREAM CG31785 INTRON CG5758
2L	2464326	2L_2464326_SNP [dm3] 2L_2464326_SNP [dm6]	C	T	8.579e^-5	0.698	INTERGENIC	enhancer FlyBase TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	2277471	2L_2277471_SNP [dm3] 2L_2277471_SNP [dm6]	T	A	8.667e^-5	0.698	DOWNSTREAM CR43753 INTRON CR43753
3L	712388	3L_712388_DEL [dm3] 3L_712388_DEL [dm6]	AAT	A	8.673e^-5	0.698	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	15083738	3R_15083738_SNP [dm3] 3R_19258016_SNP [dm6]	G	A	8.686e^-5	0.698	NON_SYNONYMOUS_CODING CG14280	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2116038	3L_2116038_SNP [dm3] 3L_2116038_SNP [dm6]	T	C	8.693e^-5	0.698	UPSTREAM sls INTERGENIC	TF binding site mE1_TFBS_Trl
2L	19794789	2L_19794789_SNP [dm3] 2L_19794789_SNP [dm6]	T	A	8.764e^-5	0.698	SYNONYMOUS_CODING fs_2_ltoPP43	TF binding site BDTNP1_TFBS_dl
3L	13872341	3L_13872341_SNP [dm3] 3L_13879241_SNP [dm6]	G	C	8.797e^-5	0.698	INTRON dysc & 1 other
3R	4382182	3R_4382182_SNP [dm3] 3R_8556460_SNP [dm6]	G	A	8.806e^-5	0.698	INTERGENIC
2R	14087322	2R_14087322_SNP [dm3] 2R_18199817_SNP [dm6]	C	A	8.824e^-5	0.698	INTERGENIC
3R	19322132	3R_19322132_SNP [dm3] 3R_23496410_SNP [dm6]	A	C	8.925e^-5	0.698	INTERGENIC
2L	13881630	2L_13881630_SNP [dm3] 2L_13881630_SNP [dm6]	A	G	8.930e^-5	0.698	INTRON CenG1A
2L	372959	2L_372959_SNP [dm3] 2L_372959_SNP [dm6]	G	T	8.953e^-5	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	13106773	3R_13106773_SNP [dm3] 3R_17281051_SNP [dm6]	T	C	8.992e^-5	0.698	INTERGENIC
X	2691367	X_2691367_SNP [dm3] X_2797334_SNP [dm6]	G	A	9.030e^-5	0.698	UPSTREAM w INTRON kirre	TF binding site BDTNP1_TFBS_z
2R	15459576	2R_15459576_SNP [dm3] 2R_19572071_SNP [dm6]	A	G	9.038e^-5	0.698	INTRON sm
3L	14813565	3L_14813565_SNP [dm3] 3L_14820465_SNP [dm6]	G	A	9.042e^-5	0.698	INTRON CG17839
2R	14336095	2R_14336095_SNP [dm3] 2R_18448590_SNP [dm6]	T	G	9.057e^-5	0.698	SYNONYMOUS_CODING CG30120 UTR_3_PRIME CG5189 INTRON Prp19	TF binding site mE1_TFBS_cad
2L	16135324	2L_16135324_DEL [dm3] 2L_16135324_DEL [dm6]	GG	G	9.086e^-5	0.698	UPSTREAM CG34168 DOWNSTREAM CR44871 & 1 other INTERGENIC
2L	4512900	2L_4512900_SNP [dm3] 2L_4512900_SNP [dm6]	C	T	9.132e^-5	0.698	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	712399	3L_712399_SNP [dm3] 3L_712399_SNP [dm6]	A	T	9.141e^-5	0.698	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	17621665	2R_17621665_SNP [dm3] 2R_21734160_SNP [dm6]	T	A	9.191e^-5	0.698	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	12792554	3L_12792554_SNP [dm3] 3L_12799454_SNP [dm6]	C	T	9.267e^-5	0.698	INTRON Atg1
X	9489608	X_9489608_SNP [dm3] X_9595575_SNP [dm6]	G	A	9.313e^-5	0.698	DOWNSTREAM CR45543 INTERGENIC
2R	14326192	2R_14326192_SNP [dm3] 2R_18438687_SNP [dm6]	G	A	9.326e^-5	0.698	INTRON CG30118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	443363	3L_443363_SNP [dm3] 3L_443363_SNP [dm6]	G	T	9.374e^-5	0.698	INTRON klar	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	9215839	3R_9215839_SNP [dm3] 3R_13390117_SNP [dm6]	C	T	9.385e^-5	0.698	SYNONYMOUS_CODING CCHa2
2L	4867035	2L_4867035_DEL [dm3] 2L_4867035_DEL [dm6]	GTCG	G	9.406e^-5	0.698	INTRON pog
3L	12646436	3L_12646436_SNP [dm3] 3L_12653336_SNP [dm6]	A	T	9.426e^-5	0.698	UPSTREAM CR43431 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	11322539	3R_11322539_DEL [dm3] 3R_15496817_DEL [dm6]	TC	T	9.450e^-5	0.698	INTERGENIC
X	18464186	X_18464186_SNP [dm3] X_18570153_SNP [dm6]	C	A	9.510e^-5	0.698	INTRON Bx	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
2L	6499760	2L_6499760_SNP [dm3] 2L_6499760_SNP [dm6]	G	A	9.527e^-5	0.698	SYNONYMOUS_CODING CG31637	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	11409403	X_11409403_SNP [dm3] X_11515370_SNP [dm6]	A	T	9.554e^-5	0.698	INTRON Drak	TF binding site mE1_TFBS_Kr
X	17321292	X_17321292_DEL [dm3] X_17427259_DEL [dm6]	AA	A	9.556e^-5	0.698	INTRON CG12994 & 1 other	TF binding site mE1_TFBS_D
2R	11053490	2R_11053490_SNP [dm3] 2R_15165985_SNP [dm6]	G	A	9.581e^-5	0.698	INTRON igl
2R	6796496	2R_6796496_SNP [dm3] 2R_10908991_SNP [dm6]	G	A	9.598e^-5	0.698	UPSTREAM Obp47a INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13570405	3R_13570405_SNP [dm3] 3R_17744683_SNP [dm6]	A	C	9.600e^-5	0.698	INTRON TyrRII
3L	16202369	3L_16202369_SNP [dm3] 3L_16209269_SNP [dm6]	G	A	9.601e^-5	0.698	INTERGENIC	TF binding site mE1_TFBS_cad
2L	3986891	2L_3986891_SNP [dm3] 2L_3986891_SNP [dm6]	A	T	9.607e^-5	0.698	INTRON fred
2R	8372456	2R_8372456_SNP [dm3] 2R_12484951_SNP [dm6]	C	T	9.615e^-5	0.698	INTRON Dh44-R2
3R	24413609	3R_24413609_SNP [dm3] 3R_28587887_SNP [dm6]	C	T	9.644e^-5	0.698	EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	3986892	2L_3986892_SNP [dm3] 2L_3986892_SNP [dm6]	G	A	9.680e^-5	0.698	INTRON fred
2R	16590709	2R_16590709_SNP [dm3] 2R_20703204_SNP [dm6]	G	A	9.860e^-5	0.698	INTRON dpr
2R	19504762	2R_19504762_SNP [dm3] 2R_23617239_SNP [dm6]	G	A	9.907e^-5	0.698	UPSTREAM CG17664 INTERGENIC	TF binding site mE1_TFBS_sens
2L	19802424	2L_19802424_SNP [dm3] 2L_19802424_SNP [dm6]	A	T	9.978e^-5	0.698	INTRON sick
2L	18125933	2L_18125933_SNP [dm3] 2L_18125933_SNP [dm6]	A	T	9.999e^-5	0.698	UPSTREAM CG31785 INTRON CG5758
3L	8207850	3L_8207850_SNP [dm3] 3L_8214750_SNP [dm6]	T	C	1.000e^-4	0.698	UPSTREAM CG8012 INTERGENIC
X	4461691	X_4461691_SNP [dm3] X_4567658_SNP [dm6]	G	A	1.004e^-4	0.698	INTRON CR32773
3R	4934322	3R_4934322_SNP [dm3] 3R_9108600_SNP [dm6]	C	T	1.005e^-4	0.698	INTRON pum
3L	7479963	3L_7479963_SNP [dm3] 3L_7486863_SNP [dm6]	G	T	1.008e^-4	0.698	SYNONYMOUS_CODING mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4537412	X_4537412_SNP [dm3] X_4643379_SNP [dm6]	C	T	1.016e^-4	0.698	INTRON CG3081 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11327910	2R_11327910_SNP [dm3] 2R_15440405_SNP [dm6]	T	C	1.022e^-4	0.698	INTRON CG43729
X	13136582	X_13136582_SNP [dm3] X_13242549_SNP [dm6]	T	A	1.025e^-4	0.698	INTRON mew	TF binding site BDTNP1_TFBS_da
2L	18932869	2L_18932869_INS [dm3] 2L_18932869_INS [dm6]	T	TT	1.031e^-4	0.698	INTRON ssp3
2L	13009259	2L_13009259_SNP [dm3] 2L_13009259_SNP [dm6]	A	C	1.033e^-4	0.698	SYNONYMOUS_CODING Tor	TF binding site mE1_TFBS_cad
2R	11805811	2R_11805811_INS [dm3] 2R_15918306_INS [dm6]	T	TATAAAGAGT	1.039e^-4	0.698	INTRON sli	TF binding site mE1_TFBS_cad
2R	18418701	2R_18418701_SNP [dm3] 2R_22531196_SNP [dm6]	A	C	1.040e^-4	0.698	INTRON px
2R	18418702	2R_18418702_SNP [dm3] 2R_22531197_SNP [dm6]	C	A	1.040e^-4	0.698	INTRON px
3L	16202334	3L_16202334_SNP [dm3] 3L_16209234_SNP [dm6]	A	T	1.042e^-4	0.698	INTERGENIC	TF binding site mE1_TFBS_cad
2R	18180957	2R_18180957_SNP [dm3] 2R_22293452_SNP [dm6]	C	T	1.043e^-4	0.698	START_GAINED CG5819 UTR_5_PRIME CG5819 INTRON CG5819
3L	18575735	3L_18575735_SNP [dm3] 3L_18582635_SNP [dm6]	C	A	1.049e^-4	0.698	UPSTREAM CR45435 INTERGENIC
2R	18018014	2R_18018014_SNP [dm3] 2R_22130509_SNP [dm6]	C	T	1.051e^-4	0.698	SYNONYMOUS_CODING CG34205 DOWNSTREAM NtR	TF binding site mE1_TFBS_chinmo
3L	412023	3L_412023_SNP [dm3] 3L_412023_SNP [dm6]	G	T	1.055e^-4	0.698	INTERGENIC
2R	17590895	2R_17590895_SNP [dm3] 2R_21703390_SNP [dm6]	C	T	1.065e^-4	0.698	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3L	4373692	3L_4373692_SNP [dm3] 3L_4373692_SNP [dm6]	A	C	1.065e^-4	0.698	INTRON DopEcR
2R	9534155	2R_9534155_SNP [dm3] 2R_13646650_SNP [dm6]	T	A	1.070e^-4	0.698	INTRON fas
X	12937100	X_12937100_SNP [dm3] X_13043067_SNP [dm6]	G	A	1.082e^-4	0.698	INTRON rad
X	12772793	X_12772793_SNP [dm3] X_12878760_SNP [dm6]	T	A	1.086e^-4	0.698	INTRON Pde9
3L	12615832	3L_12615832_SNP [dm3] 3L_12622732_SNP [dm6]	C	A	1.091e^-4	0.698	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	9849318	X_9849318_DEL [dm3] X_9955285_DEL [dm6]	TCGACT	T	1.091e^-4	0.698	INTERGENIC
3L	11525398	3L_11525398_SNP [dm3] 3L_11532298_SNP [dm6]	C	T	1.093e^-4	0.698	INTRON Mob2
2L	14694914	2L_14694914_SNP [dm3] 2L_14694914_SNP [dm6]	C	T	1.096e^-4	0.698	INTERGENIC
3L	2646789	3L_2646789_SNP [dm3] 3L_2646789_SNP [dm6]	T	G	1.103e^-4	0.698	UTR_3_PRIME CG1143 DOWNSTREAM CG1143
2L	10790313	2L_10790313_SNP [dm3] 2L_10790313_SNP [dm6]	A	G	1.105e^-4	0.698	START_GAINED CG31870 UTR_5_PRIME CG31870 INTRON CG31869
3L	6710275	3L_6710275_SNP [dm3] 3L_6717175_SNP [dm6]	G	A	1.114e^-4	0.698	INTRON ple	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	13243700	3R_13243700_SNP [dm3] 3R_17417978_SNP [dm6]	T	A	1.115e^-4	0.698	UTR_3_PRIME CG33333 UPSTREAM CG42834
2R	8366265	2R_8366265_SNP [dm3] 2R_12478760_SNP [dm6]	A	C	1.116e^-4	0.698	INTRON Dh44-R2
2R	17590890	2R_17590890_SNP [dm3] 2R_21703385_SNP [dm6]	A	C	1.121e^-4	0.698	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3L	14815037	3L_14815037_SNP [dm3] 3L_14821937_SNP [dm6]	A	C	1.125e^-4	0.698	INTRON CG17839
3L	712377	3L_712377_SNP [dm3] 3L_712377_SNP [dm6]	A	C	1.130e^-4	0.698	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	4378405	3L_4378405_SNP [dm3] 3L_4378405_SNP [dm6]	A	T	1.131e^-4	0.698	UPSTREAM CR44360 INTRON DopEcR
X	18463732	X_18463732_SNP [dm3] X_18569699_SNP [dm6]	A	G	1.132e^-4	0.698	INTRON Bx	TF binding site BDTNP1_TFBS_da
2R	15428091	2R_15428091_SNP [dm3] 2R_19540586_SNP [dm6]	C	A	1.146e^-4	0.698	INTRON sm
2L	19803606	2L_19803606_SNP [dm3] 2L_19803606_SNP [dm6]	C	T	1.153e^-4	0.698	INTRON sick
2L	4512885	2L_4512885_SNP [dm3] 2L_4512885_SNP [dm6]	C	T	1.154e^-4	0.698	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13175133	3R_13175133_SNP [dm3] 3R_17349411_SNP [dm6]	A	C	1.155e^-4	0.698	INTRON beat-IIa
X	7620847	X_7620847_SNP [dm3] X_7726814_SNP [dm6]	T	C	1.156e^-4	0.698	SYNONYMOUS_CODING NELF-B DOWNSTREAM Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25587372	3R_25587372_SNP [dm3] 3R_29761650_SNP [dm6]	T	A	1.174e^-4	0.698	INTERGENIC
2L	2277437	2L_2277437_SNP [dm3] 2L_2277437_SNP [dm6]	A	T	1.175e^-4	0.698	DOWNSTREAM CR43753 INTRON CR43753
3L	7594006	3L_7594006_SNP [dm3] 3L_7600906_SNP [dm6]	A	C	1.186e^-4	0.698	INTRON CG33275
2L	19804790	2L_19804790_SNP [dm3] 2L_19804790_SNP [dm6]	C	G	1.188e^-4	0.698	INTRON sick
2R	11327929	2R_11327929_SNP [dm3] 2R_15440424_SNP [dm6]	G	T	1.188e^-4	0.698	INTRON CG43729
3L	428290	3L_428290_SNP [dm3] 3L_428290_SNP [dm6]	C	T	1.190e^-4	0.698	INTERGENIC
3L	12615818	3L_12615818_SNP [dm3] 3L_12622718_SNP [dm6]	C	T	1.193e^-4	0.698	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	10636889	2L_10636889_SNP [dm3] 2L_10636889_SNP [dm6]	C	T	1.194e^-4	0.698	INTRON CG7329
2L	7207197	2L_7207197_SNP [dm3] 2L_7207197_SNP [dm6]	A	G	1.196e^-4	0.698	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784	TF binding site mE1_TFBS_sens
3L	1565411	3L_1565411_SNP [dm3] 3L_1565411_SNP [dm6]	C	T	1.197e^-4	0.698	START_GAINED CG12003 UTR_5_PRIME CG12003 INTRON CG7879	TF binding site mE1_TFBS_sens
3L	12615821	3L_12615821_SNP [dm3] 3L_12622721_SNP [dm6]	C	T	1.197e^-4	0.698	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	5229333	X_5229333_SNP [dm3] X_5335300_SNP [dm6]	C	T	1.205e^-4	0.698	DOWNSTREAM CanB INTERGENIC
3L	3680449	3L_3680449_SNP [dm3] 3L_3680449_SNP [dm6]	G	A	1.206e^-4	0.698	INTERGENIC	TF binding site mE1_TFBS_cad
3L	428242	3L_428242_DEL [dm3] 3L_428242_DEL [dm6]	AAGTATTCCAA...	A	1.208e^-4	0.698	INTERGENIC
2L	21921535	2L_21921535_SNP [dm3] 2L_21921535_SNP [dm6]	T	C	1.214e^-4	0.698	INTERGENIC
3L	2646631	3L_2646631_SNP [dm3] 3L_2646631_SNP [dm6]	T	A	1.214e^-4	0.698	UTR_3_PRIME CG1143 DOWNSTREAM CG1143	TF binding site mE1_TFBS_cad
3R	13570318	3R_13570318_SNP [dm3] 3R_17744596_SNP [dm6]	C	A	1.216e^-4	0.698	INTRON TyrRII	TF binding site mE1_TFBS_cad
3L	16202321	3L_16202321_SNP [dm3] 3L_16209221_SNP [dm6]	G	T	1.217e^-4	0.698	INTERGENIC	TF binding site mE1_TFBS_cad
X	5055388	X_5055388_SNP [dm3] X_5161355_SNP [dm6]	C	A	1.218e^-4	0.698	INTRON rg & 1 other
3L	428289	3L_428289_SNP [dm3] 3L_428289_SNP [dm6]	T	A	1.219e^-4	0.698	INTERGENIC
X	20258971	X_20258971_SNP [dm3] X_20387944_SNP [dm6]	G	A	1.224e^-4	0.698	INTERGENIC
3R	4339924	3R_4339924_SNP [dm3] 3R_8514202_SNP [dm6]	A	G	1.227e^-4	0.698	INTERGENIC
2R	17268235	2R_17268235_SNP [dm3] 2R_21380730_SNP [dm6]	G	A	1.231e^-4	0.698	INTERGENIC	TF binding site mE1_TFBS_sens
3R	13139061	3R_13139061_SNP [dm3] 3R_17313339_SNP [dm6]	G	T	1.233e^-4	0.698	INTERGENIC
2R	19504706	2R_19504706_SNP [dm3] 2R_23617183_SNP [dm6]	T	G	1.234e^-4	0.698	UPSTREAM CG17664 INTERGENIC	TF binding site mE1_TFBS_sens
2R	11576437	2R_11576437_SNP [dm3] 2R_15688932_SNP [dm6]	T	C	1.237e^-4	0.698	NON_SYNONYMOUS_CODING Cep89 UPSTREAM CG30090	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	17321343	X_17321343_SNP [dm3] X_17427310_SNP [dm6]	C	G	1.243e^-4	0.698	INTRON CG12994 & 1 other	TF binding site mE1_TFBS_D
2L	12527947	2L_12527947_SNP [dm3] 2L_12527947_SNP [dm6]	C	T	1.248e^-4	0.698	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12282058	2R_12282058_SNP [dm3] 2R_16394553_SNP [dm6]	G	A	1.249e^-4	0.698	INTRON Sema-2b
2R	14181533	2R_14181533_SNP [dm3] 2R_18294028_SNP [dm6]	A	T	1.260e^-4	0.698	NON_SYNONYMOUS_CODING CG14502 UPSTREAM CG18536 INTRON sbb	TF binding site mE1_TFBS_HSA
X	19343279	X_19343279_SNP [dm3] X_19449246_SNP [dm6]	G	C	1.270e^-4	0.698	INTRON kek5
3L	7015107	3L_7015107_SNP [dm3] 3L_7022007_SNP [dm6]	C	G	1.270e^-4	0.698	INTRON Mp
3L	712235	3L_712235_SNP [dm3] 3L_712235_SNP [dm6]	C	T	1.271e^-4	0.698	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
X	9849341	X_9849341_SNP [dm3] X_9955308_SNP [dm6]	C	T	1.272e^-4	0.698	INTERGENIC
3L	44258	3L_44258_SNP [dm3] 3L_44258_SNP [dm6]	A	G	1.276e^-4	0.698	INTERGENIC
3L	15507760	3L_15507760_SNP [dm3] 3L_15514660_SNP [dm6]	A	C	1.277e^-4	0.698	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10124137	3L_10124137_SNP [dm3] 3L_10131037_SNP [dm6]	C	T	1.282e^-4	0.698	INTRON dpr6
2R	11809705	2R_11809705_SNP [dm3] 2R_15922200_SNP [dm6]	G	A	1.283e^-4	0.698	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
2L	2279895	2L_2279895_SNP [dm3] 2L_2279895_SNP [dm6]	G	A	1.285e^-4	0.698	UPSTREAM CR43753 INTERGENIC
3R	19357158	3R_19357158_SNP [dm3] 3R_23531436_SNP [dm6]	T	C	1.312e^-4	0.698	UPSTREAM CG10175 INTERGENIC
2L	13637068	2L_13637068_SNP [dm3] 2L_13637068_SNP [dm6]	A	C	1.322e^-4	0.698	DOWNSTREAM kuz INTRON kuz
3L	781261	3L_781261_SNP [dm3] 3L_781261_SNP [dm6]	G	T	1.335e^-4	0.698	INTERGENIC
X	18636057	X_18636057_SNP [dm3] X_18742024_SNP [dm6]	T	G	1.354e^-4	0.698	INTERGENIC
3L	7482547	3L_7482547_SNP [dm3] 3L_7489447_SNP [dm6]	C	A	1.354e^-4	0.698	INTERGENIC
2L	15192404	2L_15192404_SNP [dm3] 2L_15192404_SNP [dm6]	G	A	1.357e^-4	0.698	INTRON CG4168
2R	8371767	2R_8371767_SNP [dm3] 2R_12484262_SNP [dm6]	T	A	1.359e^-4	0.698	INTRON Dh44-R2
2R	19502631	2R_19502631_SNP [dm3] 2R_23615108_SNP [dm6]	T	C	1.361e^-4	0.698	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
3R	24413164	3R_24413164_SNP [dm3] 3R_28587442_SNP [dm6]	C	T	1.367e^-4	0.698	EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	24829734	3R_24829734_SNP [dm3] 3R_29004012_SNP [dm6]	A	G	1.369e^-4	0.698	INTRON wat
3R	11249569	3R_11249569_SNP [dm3] 3R_15423847_SNP [dm6]	G	A	1.375e^-4	0.698	SYNONYMOUS_CODING CG6118	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19855447	2L_19855447_SNP [dm3] 2L_19855447_SNP [dm6]	A	T	1.377e^-4	0.698	INTRON sick
3L	14815465	3L_14815465_SNP [dm3] 3L_14822365_SNP [dm6]	G	A	1.380e^-4	0.698	INTRON CG17839
3R	4339621	3R_4339621_SNP [dm3] 3R_8513899_SNP [dm6]	C	G	1.382e^-4	0.698	UPSTREAM Or85c INTERGENIC
3L	17798034	3L_17798034_SNP [dm3] 3L_17804934_SNP [dm6]	A	G	1.390e^-4	0.698	UTR_3_PRIME CG32187 UPSTREAM CG5589	TF binding site mE1_TFBS_cad
X	17321351	X_17321351_SNP [dm3] X_17427318_SNP [dm6]	A	G	1.394e^-4	0.698	INTRON CG12994 & 1 other	TF binding site mE1_TFBS_D
2L	696649	2L_696649_SNP [dm3] 2L_696649_SNP [dm6]	T	A	1.411e^-4	0.698	INTRON ds	TF binding site mE1_TFBS_Trl
2L	9103236	2L_9103236_SNP [dm3] 2L_9103236_SNP [dm6]	C	T	1.413e^-4	0.698	INTERGENIC
2L	19840678	2L_19840678_SNP [dm3] 2L_19840678_SNP [dm6]	A	G	1.413e^-4	0.698	INTRON sick
3L	3680552	3L_3680552_SNP [dm3] 3L_3680552_SNP [dm6]	C	T	1.414e^-4	0.698	INTERGENIC	TF binding site mE1_TFBS_cad
3L	11780679	3L_11780679_SNP [dm3] 3L_11787579_SNP [dm6]	C	G	1.426e^-4	0.698	NON_SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	10544076	X_10544076_SNP [dm3] X_10650043_SNP [dm6]	C	T	1.426e^-4	0.698	INTRON X11Lbeta
2L	18149665	2L_18149665_SNP [dm3] 2L_18149665_SNP [dm6]	A	G	1.431e^-4	0.698	INTRON Socs36E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	15959956	2L_15959956_SNP [dm3] 2L_15959956_SNP [dm6]	G	C	1.432e^-4	0.698	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
X	5228684	X_5228684_SNP [dm3] X_5334651_SNP [dm6]	C	T	1.432e^-4	0.698	DOWNSTREAM CanB INTERGENIC
3L	428258	3L_428258_DEL [dm3] 3L_428258_DEL [dm6]	AG	A	1.437e^-4	0.698	INTERGENIC
2R	12009042	2R_12009042_SNP [dm3] 2R_16121537_SNP [dm6]	C	A	1.448e^-4	0.698	NON_SYNONYMOUS_CODING Jhe
3R	6726397	3R_6726397_SNP [dm3] 3R_10900675_SNP [dm6]	A	G	1.449e^-4	0.698	INTERGENIC
X	15182976	X_15182976_SNP [dm3] X_15288943_SNP [dm6]	C	G	1.453e^-4	0.698	UPSTREAM CR44663 INTERGENIC
2L	9238068	2L_9238068_DEL [dm3] 2L_9238068_DEL [dm6]	TT	T	1.463e^-4	0.698	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	1564489	3L_1564489_SNP [dm3] 3L_1564489_SNP [dm6]	A	G	1.464e^-4	0.698	UPSTREAM CG12003 INTRON CG7879
3L	3910709	3L_3910709_SNP [dm3] 3L_3910709_SNP [dm6]	G	T	1.477e^-4	0.698	UTR_3_PRIME Eip63F-1 UPSTREAM mge DOWNSTREAM Eip63F-1
3L	14813948	3L_14813948_SNP [dm3] 3L_14820848_SNP [dm6]	G	A	1.482e^-4	0.698	INTRON CG17839
X	8650324	X_8650324_INS [dm3] X_8756291_INS [dm6]	T	TT	1.482e^-4	0.698	DOWNSTREAM Lim1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9772816	X_9772816_SNP [dm3] X_9878783_SNP [dm6]	G	T	1.483e^-4	0.698	INTRON CG1468
X	9638282	X_9638282_SNP [dm3] X_9744249_SNP [dm6]	A	T	1.483e^-4	0.698	INTRON Sp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12118676	2L_12118676_SNP [dm3] 2L_12118676_SNP [dm6]	G	A	1.492e^-4	0.698	INTRON CG17211	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	15003144	2L_15003144_SNP [dm3] 2L_15003144_SNP [dm6]	C	T	1.508e^-4	0.698	INTERGENIC
2L	9137682	2L_9137682_SNP [dm3] 2L_9137682_SNP [dm6]	G	A	1.509e^-4	0.698	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_inv
2R	9356682	2R_9356682_SNP [dm3] 2R_13469177_SNP [dm6]	A	C	1.516e^-4	0.698	INTRON arr	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu
3R	25570751	3R_25570751_SNP [dm3] 3R_29745029_SNP [dm6]	A	C	1.517e^-4	0.698	START_GAINED CG7609 UTR_5_PRIME CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	677700	3L_677700_SNP [dm3] 3L_677700_SNP [dm6]	T	A	1.517e^-4	0.698	DOWNSTREAM CG17129 INTERGENIC
2L	19835414	2L_19835414_SNP [dm3] 2L_19835414_SNP [dm6]	C	T	1.519e^-4	0.698	INTRON sick
2L	18333827	2L_18333827_SNP [dm3] 2L_18333827_SNP [dm6]	G	A	1.523e^-4	0.698	INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2L	19469329	2L_19469329_SNP [dm3] 2L_19469329_SNP [dm6]	C	T	1.528e^-4	0.698	DOWNSTREAM CR45723 EXON CR45722
3L	12791842	3L_12791842_SNP [dm3] 3L_12798742_SNP [dm6]	C	T	1.529e^-4	0.698	INTRON Atg1
2L	15960200	2L_15960200_SNP [dm3] 2L_15960200_SNP [dm6]	C	G	1.534e^-4	0.698	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
3L	5129042	3L_5129042_SNP [dm3] 3L_5135942_SNP [dm6]	G	A	1.538e^-4	0.698	SYNONYMOUS_CODING CG10674 UPSTREAM CG4611 DOWNSTREAM CG4603 EXON CR45160	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	428283	3L_428283_MNP [dm3] 3L_428283_MNP [dm6]	AAC	GTT	1.539e^-4	0.698	INTERGENIC
2R	11532943	2R_11532943_SNP [dm3] 2R_15645438_SNP [dm6]	A	G	1.544e^-4	0.698	INTRON CG42524	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	428280	3L_428280_SNP [dm3] 3L_428280_SNP [dm6]	T	C	1.545e^-4	0.698	INTERGENIC
X	18378607	X_18378607_SNP [dm3] X_18484574_SNP [dm6]	A	T	1.545e^-4	0.698	UTR_3_PRIME psh UPSTREAM Hayan
3L	12792249	3L_12792249_SNP [dm3] 3L_12799149_SNP [dm6]	C	G	1.546e^-4	0.698	INTRON Atg1
3L	6714238	3L_6714238_SNP [dm3] 3L_6721138_SNP [dm6]	T	C	1.548e^-4	0.698	INTERGENIC
2R	15428084	2R_15428084_SNP [dm3] 2R_19540579_SNP [dm6]	A	G	1.550e^-4	0.698	INTRON sm
3L	7199896	3L_7199896_SNP [dm3] 3L_7206796_SNP [dm6]	T	G	1.551e^-4	0.698	INTERGENIC
3R	25825076	3R_25825076_SNP [dm3] 3R_29999354_SNP [dm6]	C	T	1.557e^-4	0.698	SYNONYMOUS_CODING CG11504 UPSTREAM CG34298	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	958511	2L_958511_SNP [dm3] 2L_958511_SNP [dm6]	A	T	1.561e^-4	0.698	DOWNSTREAM CG4341 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	17891632	3L_17891632_MNP [dm3] 3L_17898532_MNP [dm6]	AATC	TGAA	1.576e^-4	0.698	DOWNSTREAM Prestin INTERGENIC
2R	7328313	2R_7328313_SNP [dm3] 2R_11440808_SNP [dm6]	G	A	1.581e^-4	0.698	INTRON CG7777
3L	17891621	3L_17891621_SNP [dm3] 3L_17898521_SNP [dm6]	T	C	1.585e^-4	0.698	DOWNSTREAM Prestin INTERGENIC
3R	4415773	3R_4415773_SNP [dm3] 3R_8590051_SNP [dm6]	G	T	1.589e^-4	0.698	INTRON 5-HT2B	TF binding site mE1_TFBS_cad
X	9849152	X_9849152_SNP [dm3] X_9955119_SNP [dm6]	T	A	1.593e^-4	0.698	INTERGENIC
3L	16432980	3L_16432980_SNP [dm3] 3L_16439880_SNP [dm6]	A	T	1.598e^-4	0.698	INTRON CG33158 & 1 other
3L	18531737	3L_18531737_SNP [dm3] 3L_18538637_SNP [dm6]	A	G	1.616e^-4	0.698	INTERGENIC
3L	4841826	3L_4841826_SNP [dm3] 3L_4841826_SNP [dm6]	T	C	1.617e^-4	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	17264663	X_17264663_SNP [dm3] X_17370630_SNP [dm6]	A	T	1.618e^-4	0.698	INTERGENIC
2L	19803822	2L_19803822_SNP [dm3] 2L_19803822_SNP [dm6]	G	A	1.625e^-4	0.698	INTRON sick
2L	19753855	2L_19753855_SNP [dm3] 2L_19753855_SNP [dm6]	C	G	1.627e^-4	0.698	SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11523709	3L_11523709_SNP [dm3] 3L_11530609_SNP [dm6]	C	A	1.631e^-4	0.698	INTRON Mob2
3L	413912	3L_413912_SNP [dm3] 3L_413912_SNP [dm6]	C	T	1.632e^-4	0.698	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	6187516	3L_6187516_SNP [dm3] 3L_6194416_SNP [dm6]	G	T	1.635e^-4	0.698	NON_SYNONYMOUS_CODING Trn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	10410151	2L_10410151_SNP [dm3] 2L_10410151_SNP [dm6]	A	G	1.638e^-4	0.698	DOWNSTREAM CG5355 & 1 other INTRON RpS27A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7480629	3L_7480629_SNP [dm3] 3L_7487529_SNP [dm6]	C	T	1.638e^-4	0.698	INTRON mthl6
3R	25853866	3R_25853866_SNP [dm3] 3R_30028144_SNP [dm6]	G	T	1.642e^-4	0.698	INTRON Axn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8647382	3L_8647382_SNP [dm3] 3L_8654282_SNP [dm6]	T	C	1.647e^-4	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19995800	X_19995800_SNP [dm3] X_20101767_SNP [dm6]	G	C	1.649e^-4	0.698	INTERGENIC	transposable element FlyBase
3L	428293	3L_428293_SNP [dm3] 3L_428293_SNP [dm6]	A	T	1.655e^-4	0.698	INTERGENIC
3R	17759279	3R_17759279_SNP [dm3] 3R_21933557_SNP [dm6]	A	G	1.655e^-4	0.698	INTERGENIC
2L	10579985	2L_10579985_SNP [dm3] 2L_10579985_SNP [dm6]	T	A	1.658e^-4	0.698	DOWNSTREAM CG34161 INTRON Trim9 & 1 other
2R	16624012	2R_16624012_SNP [dm3] 2R_20736507_SNP [dm6]	C	T	1.665e^-4	0.698	INTRON dpr
3R	13314664	3R_13314664_SNP [dm3] 3R_17488942_SNP [dm6]	C	T	1.671e^-4	0.698	INTRON Dscam3
3L	4556696	3L_4556696_SNP [dm3] 3L_4556696_SNP [dm6]	T	A	1.674e^-4	0.698	UPSTREAM CG42540 INTRON CG42540
2L	13441672	2L_13441672_SNP [dm3] 2L_13441672_SNP [dm6]	A	G	1.680e^-4	0.698	INTRON CG42784 EXON CR45683
3R	26871242	3R_26871242_SNP [dm3] 3R_31045520_SNP [dm6]	G	A	1.684e^-4	0.698	UPSTREAM CG33920 INTRON CanA1
X	5010208	X_5010208_SNP [dm3] X_5116175_SNP [dm6]	T	G	1.687e^-4	0.698	INTRON rg & 1 other
2L	19837577	2L_19837577_SNP [dm3] 2L_19837577_SNP [dm6]	G	A	1.688e^-4	0.698	INTRON sick	TF binding site mE1_TFBS_cad
3R	5143723	3R_5143723_SNP [dm3] 3R_9318001_SNP [dm6]	A	C	1.688e^-4	0.698	INTRON CG8861
3L	781289	3L_781289_SNP [dm3] 3L_781289_SNP [dm6]	T	C	1.695e^-4	0.698	INTERGENIC
X	10030942	X_10030942_SNP [dm3] X_10136909_SNP [dm6]	C	T	1.698e^-4	0.698	INTRON CR44894 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12425809	2R_12425809_SNP [dm3] 2R_16538304_SNP [dm6]	T	C	1.700e^-4	0.698	INTERGENIC
2R	20033431	2R_20033431_SNP [dm3] 2R_24145908_SNP [dm6]	A	G	1.703e^-4	0.698	INTRON Dat
2R	11849590	2R_11849590_SNP [dm3] 2R_15962085_SNP [dm6]	T	G	1.708e^-4	0.698	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14976440	2R_14976440_SNP [dm3] 2R_19088935_SNP [dm6]	A	T	1.716e^-4	0.698	INTRON 5-HT1A
3L	4238717	3L_4238717_SNP [dm3] 3L_4238717_SNP [dm6]	G	T	1.725e^-4	0.698	INTERGENIC
3L	18533592	3L_18533592_SNP [dm3] 3L_18540492_SNP [dm6]	A	C	1.728e^-4	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	14325039	X_14325039_SNP [dm3] X_14431006_SNP [dm6]	A	T	1.733e^-4	0.698	INTRON dpr8
X	14325040	X_14325040_SNP [dm3] X_14431007_SNP [dm6]	C	T	1.738e^-4	0.698	INTRON dpr8
2R	12281873	2R_12281873_SNP [dm3] 2R_16394368_SNP [dm6]	T	C	1.741e^-4	0.698	INTRON Sema-2b
3L	22930118	3L_22930118_SNP [dm3] 3L_22937018_SNP [dm6]	A	T	1.744e^-4	0.698	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2557292	X_2557292_SNP [dm3] X_2663259_SNP [dm6]	T	G	1.746e^-4	0.698	INTRON sgg
3L	8879430	3L_8879430_SNP [dm3] 3L_8886330_SNP [dm6]	G	C	1.760e^-4	0.698	SYNONYMOUS_CODING dally
2L	14217522	2L_14217522_SNP [dm3] 2L_14217522_SNP [dm6]	C	G	1.761e^-4	0.698	INTRON Dyrk2
X	3934025	X_3934025_SNP [dm3] X_4039992_SNP [dm6]	C	A	1.767e^-4	0.698	INTERGENIC
2L	13603816	2L_13603816_SNP [dm3] 2L_13603816_SNP [dm6]	G	A	1.769e^-4	0.698	INTRON kuz
3L	4373697	3L_4373697_SNP [dm3] 3L_4373697_SNP [dm6]	A	G	1.772e^-4	0.698	INTRON DopEcR
3L	13487564	3L_13487564_SNP [dm3] 3L_13494464_SNP [dm6]	G	T	1.782e^-4	0.698	INTRON Tgi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	13136571	X_13136571_SNP [dm3] X_13242538_SNP [dm6]	T	A	1.786e^-4	0.698	INTRON mew	TF binding site BDTNP1_TFBS_da
2L	19802933	2L_19802933_SNP [dm3] 2L_19802933_SNP [dm6]	G	A	1.792e^-4	0.698	INTRON sick
3L	4557102	3L_4557102_SNP [dm3] 3L_4557102_SNP [dm6]	A	G	1.803e^-4	0.698	UPSTREAM CG42540 INTRON CG42540
2L	8447265	2L_8447265_SNP [dm3] 2L_8447265_SNP [dm6]	A	G	1.805e^-4	0.698	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	428273	3L_428273_DEL [dm3] 3L_428273_DEL [dm6]	CGGGTC	C	1.806e^-4	0.698	INTERGENIC
3L	13310271	3L_13310271_SNP [dm3] 3L_13317171_SNP [dm6]	C	T	1.807e^-4	0.698	INTERGENIC
3R	13139524	3R_13139524_SNP [dm3] 3R_17313802_SNP [dm6]	G	T	1.807e^-4	0.698	INTERGENIC
3L	9661315	3L_9661315_SNP [dm3] 3L_9668215_SNP [dm6]	A	G	1.811e^-4	0.698	INTRON fry	TF binding site mE1_TFBS_cad
X	13691257	X_13691257_SNP [dm3] X_13797224_SNP [dm6]	C	T	1.815e^-4	0.698	SYNONYMOUS_CODING CG10996 INTRON inaE
3L	14057292	3L_14057292_SNP [dm3] 3L_14064192_SNP [dm6]	C	T	1.817e^-4	0.698	INTRON CG32138	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	5458759	X_5458759_SNP [dm3] X_5564726_SNP [dm6]	C	T	1.820e^-4	0.698	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
2R	14326426	2R_14326426_SNP [dm3] 2R_18438921_SNP [dm6]	C	A	1.822e^-4	0.698	INTRON CG30118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	19765108	2L_19765108_DEL [dm3] 2L_19765108_DEL [dm6]	CG	A	1.826e^-4	0.698	UPSTREAM fbp DOWNSTREAM bsh INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	25570650	3R_25570650_SNP [dm3] 3R_29744928_SNP [dm6]	C	T	1.832e^-4	0.698	SYNONYMOUS_CODING CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3437649	2L_3437649_SNP [dm3] 2L_3437649_SNP [dm6]	A	T	1.836e^-4	0.698	INTERGENIC
3L	602846	3L_602846_SNP [dm3] 3L_602846_SNP [dm6]	G	C	1.838e^-4	0.698	INTRON CG13893
2L	8636210	2L_8636210_DEL [dm3] 2L_8636210_DEL [dm6]	CAGCAGC	C	1.838e^-4	0.698	INTRON Sema-1a
3R	5129982	3R_5129982_SNP [dm3] 3R_9304260_SNP [dm6]	C	G	1.843e^-4	0.698	INTRON CG8861
2L	10924781	2L_10924781_SNP [dm3] 2L_10924781_SNP [dm6]	G	T	1.853e^-4	0.698	INTRON dpr2
3L	9329852	3L_9329852_SNP [dm3] 3L_9336752_SNP [dm6]	T	C	1.856e^-4	0.698	SYNONYMOUS_CODING PGRP-LA UTR_5_PRIME PGRP-LA
3R	12744630	3R_12744630_SNP [dm3] 3R_16918908_SNP [dm6]	G	A	1.857e^-4	0.698	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	588419	2L_588419_SNP [dm3] 2L_588419_SNP [dm6]	T	A	1.863e^-4	0.698	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
2L	18125763	2L_18125763_DEL [dm3] 2L_18125763_DEL [dm6]	CATACTTTGTTC...	C	1.864e^-4	0.698	UPSTREAM CG31785 INTRON CG5758
3R	15117802	3R_15117802_SNP [dm3] 3R_19292080_SNP [dm6]	G	T	1.866e^-4	0.698	INTERGENIC
2R	19443694	2R_19443694_SNP [dm3] 2R_23556171_SNP [dm6]	T	G	1.881e^-4	0.698	UTR_5_PRIME Rrp4 UPSTREAM ItgalphaPS5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2645491	3L_2645491_SNP [dm3] 3L_2645491_SNP [dm6]	A	T	1.894e^-4	0.698	INTRON CG1143
3R	25912757	3R_25912757_SNP [dm3] 3R_30087035_SNP [dm6]	C	T	1.898e^-4	0.698	INTRON sima
3L	13712617	3L_13712617_SNP [dm3] 3L_13719517_SNP [dm6]	A	T	1.899e^-4	0.698	INTRON bru-3
X	13044883	X_13044883_SNP [dm3] X_13150850_SNP [dm6]	T	G	1.904e^-4	0.698	INTRON CG32645
2R	10417946	2R_10417946_DEL [dm3] 2R_14530441_DEL [dm6]	TTTAATTTTACT...	T	1.909e^-4	0.698	INTRON ttv
3L	17891629	3L_17891629_SNP [dm3] 3L_17898529_SNP [dm6]	T	A	1.909e^-4	0.698	DOWNSTREAM Prestin INTERGENIC
2L	13441671	2L_13441671_SNP [dm3] 2L_13441671_SNP [dm6]	C	A	1.912e^-4	0.698	INTRON CG42784 EXON CR45683
2R	19537420	2R_19537420_SNP [dm3] 2R_23649897_SNP [dm6]	A	T	1.915e^-4	0.698	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8547757	3L_8547757_SNP [dm3] 3L_8554657_SNP [dm6]	A	T	1.919e^-4	0.698	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	1408283	2R_1408283_SNP [dm3] 2R_5520778_SNP [dm6]	A	C	1.920e^-4	0.698	INTRON CG30438
2R	19008963	2R_19008963_SNP [dm3] 2R_23121440_SNP [dm6]	A	G	1.925e^-4	0.698	INTERGENIC
3L	2646310	3L_2646310_SNP [dm3] 3L_2646310_SNP [dm6]	T	C	1.928e^-4	0.698	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4426085	3L_4426085_SNP [dm3] 3L_4426085_SNP [dm6]	T	C	1.943e^-4	0.698	SYNONYMOUS_CODING CG15020
2L	6843855	2L_6843855_DEL [dm3] 2L_6843855_DEL [dm6]	CAC	C	1.947e^-4	0.698	INTERGENIC
3R	24829722	3R_24829722_SNP [dm3] 3R_29004000_SNP [dm6]	T	C	1.952e^-4	0.698	INTRON wat
3L	14565106	3L_14565106_DEL [dm3] 3L_14572006_DEL [dm6]	TT	T	1.955e^-4	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	5120460	X_5120460_SNP [dm3] X_5226427_SNP [dm6]	A	G	1.956e^-4	0.698	INTRON CG15465 & 1 other
X	19995744	X_19995744_SNP [dm3] X_20101711_SNP [dm6]	A	T	1.956e^-4	0.698	INTERGENIC	transposable element FlyBase
3L	17798025	3L_17798025_SNP [dm3] 3L_17804925_SNP [dm6]	G	A	1.959e^-4	0.698	UTR_3_PRIME CG32187 UPSTREAM CG5589	TF binding site mE1_TFBS_cad
2R	19503954	2R_19503954_SNP [dm3] 2R_23616431_SNP [dm6]	C	T	1.961e^-4	0.698	INTRON CG17664
3R	26595100	3R_26595100_SNP [dm3] 3R_30769378_SNP [dm6]	A	G	1.963e^-4	0.698	INTRON zfh1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21736965	2L_21736965_DEL [dm3] 2L_21736965_DEL [dm6]	AGACTCGGACTGTTT...	A	1.969e^-4	0.698	INTERGENIC	transposable element FlyBase
2R	12279058	2R_12279058_SNP [dm3] 2R_16391553_SNP [dm6]	C	T	1.969e^-4	0.698	INTRON Sema-2b	TF binding site mE1_TFBS_chinmo
2L	589172	2L_589172_SNP [dm3] 2L_589172_SNP [dm6]	C	T	1.969e^-4	0.698	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
3L	14834685	3L_14834685_SNP [dm3] 3L_14841585_SNP [dm6]	G	T	1.971e^-4	0.698	INTRON CG17839
X	2557293	X_2557293_SNP [dm3] X_2663260_SNP [dm6]	G	A	1.972e^-4	0.698	INTRON sgg
3R	20995023	3R_20995023_SNP [dm3] 3R_25169301_SNP [dm6]	C	G	1.990e^-4	0.698	DOWNSTREAM lobo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14009843	2L_14009843_SNP [dm3] 2L_14009843_SNP [dm6]	T	C	1.994e^-4	0.698	DOWNSTREAM tRNA:Q:34E INTERGENIC
X	5229328	X_5229328_SNP [dm3] X_5335295_SNP [dm6]	G	T	1.996e^-4	0.698	DOWNSTREAM CanB INTERGENIC
2R	13688294	2R_13688294_SNP [dm3] 2R_17800789_SNP [dm6]	T	A	1.999e^-4	0.698	UPSTREAM grh DOWNSTREAM Dhit EXON CR45270	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	13688308	2R_13688308_SNP [dm3] 2R_17800803_SNP [dm6]	C	A	1.999e^-4	0.698	UPSTREAM grh DOWNSTREAM Dhit EXON CR45270	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	4415784	3R_4415784_SNP [dm3] 3R_8590062_SNP [dm6]	C	T	2.002e^-4	0.698	INTRON 5-HT2B	TF binding site mE1_TFBS_cad
3R	4415796	3R_4415796_SNP [dm3] 3R_8590074_SNP [dm6]	C	A	2.002e^-4	0.698	INTRON 5-HT2B	TF binding site mE1_TFBS_cad
2R	7961237	2R_7961237_SNP [dm3] 2R_12073732_SNP [dm6]	G	A	2.003e^-4	0.698	INTRON CG8888
2R	6319565	2R_6319565_SNP [dm3] 2R_10432060_SNP [dm6]	C	T	2.007e^-4	0.698	INTRON RanBPM	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	20561606	X_20561606_SNP [dm3] X_20690579_SNP [dm6]	C	T	2.008e^-4	0.698	UPSTREAM run EXON CR45610	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	1564487	3L_1564487_SNP [dm3] 3L_1564487_SNP [dm6]	C	A	2.009e^-4	0.698	UPSTREAM CG12003 INTRON CG7879
2L	19742727	2L_19742727_SNP [dm3] 2L_19742727_SNP [dm6]	C	T	2.017e^-4	0.698	UPSTREAM CR44906 DOWNSTREAM CG10631 INTERGENIC
3L	9555349	3L_9555349_SNP [dm3] 3L_9562249_SNP [dm6]	A	G	2.025e^-4	0.698	INTRON CG42673
3R	22858373	3R_22858373_SNP [dm3] 3R_27032651_SNP [dm6]	T	G	2.031e^-4	0.698	INTRON RYa-R	TF binding site mE1_TFBS_HSA
2L	15195608	2L_15195608_SNP [dm3] 2L_15195608_SNP [dm6]	T	C	2.032e^-4	0.698	INTRON CG4168
3R	24412419	3R_24412419_SNP [dm3] 3R_28586697_SNP [dm6]	G	A	2.033e^-4	0.698	EXON MRE23	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
3L	12288605	3L_12288605_SNP [dm3] 3L_12295505_SNP [dm6]	G	A	2.034e^-4	0.698	INTRON CG4328
3L	21144989	3L_21144989_SNP [dm3] 3L_21151889_SNP [dm6]	C	A	2.036e^-4	0.698	INTRON Ac78C
X	9601268	X_9601268_SNP [dm3] X_9707235_SNP [dm6]	T	A	2.036e^-4	0.698	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	20187609	3L_20187609_SNP [dm3] 3L_20194509_SNP [dm6]	C	G	2.038e^-4	0.698	INTRON CG42674
3L	428296	3L_428296_MNP [dm3] 3L_428296_MNP [dm6]	GTG	TAA	2.041e^-4	0.698	INTERGENIC
3R	25918246	3R_25918246_SNP [dm3] 3R_30092524_SNP [dm6]	C	A	2.045e^-4	0.698	INTRON sima
3R	22858576	3R_22858576_SNP [dm3] 3R_27032854_SNP [dm6]	G	C	2.052e^-4	0.698	INTRON RYa-R
2L	15034312	2L_15034312_SNP [dm3] 2L_15034312_SNP [dm6]	A	G	2.058e^-4	0.698	UTR_3_PRIME GABA-B-R1 DOWNSTREAM GABA-B-R1
2R	17590878	2R_17590878_SNP [dm3] 2R_21703373_SNP [dm6]	T	C	2.059e^-4	0.698	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3L	11846422	3L_11846422_SNP [dm3] 3L_11853322_SNP [dm6]	G	A	2.062e^-4	0.698	INTRON CG44837
3R	5448700	3R_5448700_SNP [dm3] 3R_9622978_SNP [dm6]	G	T	2.063e^-4	0.698	UTR_5_PRIME CG8312 INTRON CG8312
3L	2171809	3L_2171809_SNP [dm3] 3L_2171809_SNP [dm6]	T	A	2.065e^-4	0.698	UPSTREAM CG5704 EXON CR15821
3L	428287	3L_428287_SNP [dm3] 3L_428287_SNP [dm6]	T	A	2.066e^-4	0.698	INTERGENIC
3R	25435065	3R_25435065_SNP [dm3] 3R_29609343_SNP [dm6]	T	C	2.069e^-4	0.698	DOWNSTREAM Diedel2 INTRON alph
3L	9661340	3L_9661340_SNP [dm3] 3L_9668240_SNP [dm6]	C	G	2.070e^-4	0.698	INTRON fry	TF binding site mE1_TFBS_cad
3L	12632367	3L_12632367_SNP [dm3] 3L_12639267_SNP [dm6]	A	G	2.072e^-4	0.698	INTRON CR32111
X	5229135	X_5229135_SNP [dm3] X_5335102_SNP [dm6]	T	C	2.074e^-4	0.698	DOWNSTREAM CanB INTERGENIC
2R	12110433	2R_12110433_SNP [dm3] 2R_16222928_SNP [dm6]	T	A	2.079e^-4	0.698	UPSTREAM CG7798 DOWNSTREAM CG15706 EXON CR43898
2L	8371471	2L_8371471_SNP [dm3] 2L_8371471_SNP [dm6]	T	C	2.086e^-4	0.698	UPSTREAM CR45341 INTRON CG17292
X	10765528	X_10765528_SNP [dm3] X_10871495_SNP [dm6]	A	G	2.086e^-4	0.698	DOWNSTREAM CG2157 & 1 other INTRON CG1637	TF binding site mE1_TFBS_sens
3L	442363	3L_442363_SNP [dm3] 3L_442363_SNP [dm6]	G	C	2.087e^-4	0.698	DOWNSTREAM klar INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
3L	12450024	3L_12450024_SNP [dm3] 3L_12456924_SNP [dm6]	G	A	2.092e^-4	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	711857	3L_711857_SNP [dm3] 3L_711857_SNP [dm6]	A	C	2.095e^-4	0.698	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	17759292	3R_17759292_SNP [dm3] 3R_21933570_SNP [dm6]	C	T	2.095e^-4	0.698	INTERGENIC
2L	17720234	2L_17720234_INS [dm3] 2L_17720234_INS [dm6]	T	TATATGTGTGT...	2.106e^-4	0.698	INTRON CadN	TF binding site mE1_TFBS_inv
3L	8590702	3L_8590702_SNP [dm3] 3L_8597602_SNP [dm6]	G	A	2.111e^-4	0.698	NON_SYNONYMOUS_CODING CG43078	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3934017	X_3934017_SNP [dm3] X_4039984_SNP [dm6]	T	A	2.112e^-4	0.698	INTERGENIC
3L	12148053	3L_12148053_SNP [dm3] 3L_12154953_SNP [dm6]	A	G	2.117e^-4	0.698	SYNONYMOUS_CODING Nrx-IV	TF binding site mE1_TFBS_sens
3L	4238728	3L_4238728_SNP [dm3] 3L_4238728_SNP [dm6]	A	T	2.120e^-4	0.698	INTERGENIC
X	4490935	X_4490935_SNP [dm3] X_4596902_SNP [dm6]	T	C	2.134e^-4	0.698	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	7273988	3R_7273988_SNP [dm3] 3R_11448266_SNP [dm6]	C	T	2.138e^-4	0.698	UTR_5_PRIME sals INTRON CG17230 & 1 other
2R	11976055	2R_11976055_SNP [dm3] 2R_16088550_SNP [dm6]	C	A	2.142e^-4	0.698	INTRON Dg
3L	428317	3L_428317_SNP [dm3] 3L_428317_SNP [dm6]	T	A	2.142e^-4	0.698	INTERGENIC
3R	25672069	3R_25672069_SNP [dm3] 3R_29846347_SNP [dm6]	T	A	2.145e^-4	0.698	INTRON Cad99C
3L	16331253	3L_16331253_SNP [dm3] 3L_16338153_SNP [dm6]	G	C	2.147e^-4	0.698	UPSTREAM CG4998 INTERGENIC
3L	411916	3L_411916_SNP [dm3] 3L_411916_SNP [dm6]	A	G	2.158e^-4	0.698	INTERGENIC
2L	4225703	2L_4225703_SNP [dm3] 2L_4225703_SNP [dm6]	C	G	2.162e^-4	0.698	SYNONYMOUS_CODING CG3702	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11180528	3L_11180528_SNP [dm3] 3L_11187428_SNP [dm6]	C	T	2.167e^-4	0.698	INTRON GlcAT-P
X	16338314	X_16338314_SNP [dm3] X_16444281_SNP [dm6]	A	G	2.168e^-4	0.698	SYNONYMOUS_CODING rngo DOWNSTREAM eIF-2alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1695353	2L_1695353_SNP [dm3] 2L_1695353_SNP [dm6]	C	T	2.178e^-4	0.698	SYNONYMOUS_CODING chinmo	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4373703	3L_4373703_SNP [dm3] 3L_4373703_SNP [dm6]	T	A	2.180e^-4	0.698	INTRON DopEcR
3R	4606495	3R_4606495_SNP [dm3] 3R_8780773_SNP [dm6]	T	C	2.180e^-4	0.698	UTR_5_PRIME CG33189 UPSTREAM CG33191 & 1 other DOWNSTREAM Pif1A INTRON Pif1B & 1 other	TF binding site mE1_TFBS_cad
3R	8642992	3R_8642992_SNP [dm3] 3R_12817270_SNP [dm6]	G	A	2.191e^-4	0.698	UPSTREAM CG31345 INTERGENIC
X	20258975	X_20258975_SNP [dm3] X_20387948_SNP [dm6]	A	G	2.192e^-4	0.698	INTERGENIC
2L	5867610	2L_5867610_SNP [dm3] 2L_5867610_SNP [dm6]	T	C	2.194e^-4	0.698	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10569521	X_10569521_SNP [dm3] X_10675488_SNP [dm6]	T	A	2.199e^-4	0.698	INTRON X11Lbeta
X	9816859	X_9816859_DEL [dm3] X_9922826_DEL [dm6]	CC	C	2.201e^-4	0.698	INTERGENIC
2L	8590460	2L_8590460_SNP [dm3] 2L_8590460_SNP [dm6]	T	A	2.201e^-4	0.698	INTRON Sema-1a EXON CR43855
2R	13917272	2R_13917272_SNP [dm3] 2R_18029767_SNP [dm6]	C	T	2.206e^-4	0.698	INTERGENIC
2R	11804667	2R_11804667_SNP [dm3] 2R_15917162_SNP [dm6]	T	G	2.207e^-4	0.698	DOWNSTREAM CR44373 INTRON sli	TF binding site mE1_TFBS_cad
3L	2645081	3L_2645081_SNP [dm3] 3L_2645081_SNP [dm6]	A	G	2.209e^-4	0.698	UPSTREAM CG1143 INTERGENIC
3L	4159131	3L_4159131_DEL [dm3] 3L_4159131_DEL [dm6]	GG	G	2.214e^-4	0.698	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	1603021	2L_1603021_SNP [dm3] 2L_1603021_SNP [dm6]	A	C	2.214e^-4	0.698	SYNONYMOUS_CODING haf INTRON CG31935
3L	412601	3L_412601_SNP [dm3] 3L_412601_SNP [dm6]	T	C	2.216e^-4	0.698	INTERGENIC
2R	15468686	2R_15468686_SNP [dm3] 2R_19581181_SNP [dm6]	C	T	2.224e^-4	0.698	INTRON sm
2L	5549414	2L_5549414_SNP [dm3] 2L_5549414_SNP [dm6]	A	G	2.232e^-4	0.698	UTR_3_PRIME Oscillin DOWNSTREAM CG14014 & 1 other INTRON Oscillin
3L	502682	3L_502682_SNP [dm3] 3L_502682_SNP [dm6]	G	A	2.232e^-4	0.698	INTRON klar
3L	6256244	3L_6256244_SNP [dm3] 3L_6263144_SNP [dm6]	T	A	2.236e^-4	0.698	UPSTREAM ImpL3 EXON CR44522	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	13688296	2R_13688296_SNP [dm3] 2R_17800791_SNP [dm6]	A	G	2.241e^-4	0.698	UPSTREAM grh DOWNSTREAM Dhit EXON CR45270	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	19533244	2R_19533244_SNP [dm3] 2R_23645721_SNP [dm6]	G	A	2.242e^-4	0.698	UPSTREAM retn INTRON retn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	13600157	3R_13600157_SNP [dm3] 3R_17774435_SNP [dm6]	T	G	2.250e^-4	0.698	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3R	25566123	3R_25566123_SNP [dm3] 3R_29740401_SNP [dm6]	G	C	2.251e^-4	0.698	UTR_5_PRIME CG1969 INTRON CG1969	TF binding site BDTNP1_TFBS_dl
3L	428262	3L_428262_DEL [dm3] 3L_428262_DEL [dm6]	TAAAA	T	2.253e^-4	0.698	INTERGENIC
3L	428268	3L_428268_SNP [dm3] 3L_428268_SNP [dm6]	G	T	2.253e^-4	0.698	INTERGENIC
2L	1834297	2L_1834297_SNP [dm3] 2L_1834297_SNP [dm6]	A	G	2.254e^-4	0.698	INTERGENIC
3L	441402	3L_441402_SNP [dm3] 3L_441402_SNP [dm6]	C	G	2.259e^-4	0.698	UPSTREAM klar INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_Trl
3L	1164293	3L_1164293_SNP [dm3] 3L_1164293_SNP [dm6]	C	T	2.261e^-4	0.698	INTRON bab2	regulatory region REDfly_CRMs
3L	443380	3L_443380_SNP [dm3] 3L_443380_SNP [dm6]	G	A	2.265e^-4	0.698	INTRON klar	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	24421845	3R_24421845_SNP [dm3] 3R_28596123_SNP [dm6]	T	G	2.265e^-4	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25918976	3R_25918976_SNP [dm3] 3R_30093254_SNP [dm6]	C	T	2.272e^-4	0.698	INTRON sima
3L	7200910	3L_7200910_SNP [dm3] 3L_7207810_SNP [dm6]	A	T	2.279e^-4	0.698	INTERGENIC
3R	15101654	3R_15101654_DEL [dm3] 3R_19275932_DEL [dm6]	AA	A	2.283e^-4	0.698	INTERGENIC
2L	19839998	2L_19839998_SNP [dm3] 2L_19839998_SNP [dm6]	A	T	2.288e^-4	0.698	INTRON sick
X	19871664	X_19871664_SNP [dm3] X_19977631_SNP [dm6]	C	G	2.293e^-4	0.698	INTERGENIC
3R	24132528	3R_24132528_SNP [dm3] 3R_28306806_SNP [dm6]	T	A	2.301e^-4	0.698	INTERGENIC	TF binding site mE1_TFBS_HSA
X	1195508	X_1195508_SNP [dm3] X_1301475_SNP [dm6]	T	A	2.306e^-4	0.698	INTRON DAAM
2L	8636207	2L_8636207_SNP [dm3] 2L_8636207_SNP [dm6]	C	T	2.308e^-4	0.698	INTRON Sema-1a
3L	11722674	3L_11722674_SNP [dm3] 3L_11729574_SNP [dm6]	T	C	2.311e^-4	0.698	SYNONYMOUS_CODING CG32088
X	2552057	X_2552057_SNP [dm3] X_2658024_SNP [dm6]	G	T	2.313e^-4	0.698	UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	22883797	3L_22883797_SNP [dm3] 3L_22890697_SNP [dm6]	A	G	2.314e^-4	0.698	INTRON slif	transposable element FlyBase
2L	15959973	2L_15959973_SNP [dm3] 2L_15959973_SNP [dm6]	G	A	2.321e^-4	0.698	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
2L	19840675	2L_19840675_SNP [dm3] 2L_19840675_SNP [dm6]	A	G	2.323e^-4	0.698	INTRON sick
3R	12645135	3R_12645135_SNP [dm3] 3R_16819413_SNP [dm6]	T	A	2.326e^-4	0.698	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	13310278	3L_13310278_SNP [dm3] 3L_13317178_SNP [dm6]	C	G	2.326e^-4	0.698	INTERGENIC
2L	9360941	2L_9360941_SNP [dm3] 2L_9360941_SNP [dm6]	T	A	2.327e^-4	0.698	INTERGENIC
3R	27238760	3R_27238760_SNP [dm3] 3R_31413038_SNP [dm6]	A	G	2.332e^-4	0.698	INTRON Gprk2
X	17264950	X_17264950_SNP [dm3] X_17370917_SNP [dm6]	A	T	2.333e^-4	0.698	INTERGENIC
X	18636049	X_18636049_SNP [dm3] X_18742016_SNP [dm6]	G	A	2.341e^-4	0.698	INTERGENIC
2L	1603822	2L_1603822_DEL [dm3] 2L_1603822_DEL [dm6]	GG	G	2.347e^-4	0.698	INTRON CG31935 & 1 other
2L	9580774	2L_9580774_SNP [dm3] 2L_9580774_SNP [dm6]	C	T	2.347e^-4	0.698	SYNONYMOUS_CODING gcm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2L	7366000	2L_7366000_SNP [dm3] 2L_7366000_SNP [dm6]	G	A	2.349e^-4	0.698	INTRON Wnt10
3L	712374	3L_712374_SNP [dm3] 3L_712374_SNP [dm6]	G	C	2.356e^-4	0.698	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	17292567	2L_17292567_INS [dm3] 2L_17292567_INS [dm6]	A	ACCA	2.359e^-4	0.698	UPSTREAM CG6380 INTERGENIC
2L	9360926	2L_9360926_SNP [dm3] 2L_9360926_SNP [dm6]	G	A	2.360e^-4	0.698	INTERGENIC
3R	10488924	3R_10488924_SNP [dm3] 3R_14663202_SNP [dm6]	C	T	2.368e^-4	0.698	UPSTREAM BigH1 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2646481	3L_2646481_SNP [dm3] 3L_2646481_SNP [dm6]	T	C	2.369e^-4	0.698	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad
3L	4373663	3L_4373663_SNP [dm3] 3L_4373663_SNP [dm6]	T	C	2.375e^-4	0.698	INTRON DopEcR
3L	3873722	3L_3873722_SNP [dm3] 3L_3873722_SNP [dm6]	A	C	2.379e^-4	0.698	INTERGENIC	TF binding site mE1_TFBS_cad
2R	19505508	2R_19505508_SNP [dm3] 2R_23617985_SNP [dm6]	T	G	2.379e^-4	0.698	INTERGENIC
X	5080122	X_5080122_SNP [dm3] X_5186089_SNP [dm6]	A	C	2.380e^-4	0.698	INTRON rg & 1 other
2L	16376688	2L_16376688_SNP [dm3] 2L_16376688_SNP [dm6]	A	T	2.381e^-4	0.698	INTERGENIC
2L	7902296	2L_7902296_SNP [dm3] 2L_7902296_SNP [dm6]	A	C	2.381e^-4	0.698	INTRON Snoo
X	16823982	X_16823982_SNP [dm3] X_16929949_SNP [dm6]	A	T	2.382e^-4	0.698	INTRON CG4928
X	21921468	X_21921468_SNP [dm3] X_22519632_SNP [dm6]	A	G	2.387e^-4	0.698	INTRON CG17600
X	13136702	X_13136702_SNP [dm3] X_13242669_SNP [dm6]	T	A	2.395e^-4	0.698	INTRON mew	TF binding site BDTNP1_TFBS_da
X	14154319	X_14154319_SNP [dm3] X_14260286_SNP [dm6]	G	C	2.396e^-4	0.698	UPSTREAM CG1461 INTERGENIC
3L	11846426	3L_11846426_SNP [dm3] 3L_11853326_SNP [dm6]	A	T	2.401e^-4	0.698	INTRON CG44837
X	5228746	X_5228746_SNP [dm3] X_5334713_SNP [dm6]	G	C	2.410e^-4	0.698	DOWNSTREAM CanB INTERGENIC
3L	428302	3L_428302_SNP [dm3] 3L_428302_SNP [dm6]	C	A	2.411e^-4	0.698	INTERGENIC
X	13504220	X_13504220_SNP [dm3] X_13610187_SNP [dm6]	T	C	2.415e^-4	0.698	SYNONYMOUS_CODING Ndc80 DOWNSTREAM CG11178	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5145048	3R_5145048_SNP [dm3] 3R_9319326_SNP [dm6]	G	A	2.428e^-4	0.698	INTRON CG8861
2R	18033022	2R_18033022_SNP [dm3] 2R_22145517_SNP [dm6]	C	T	2.435e^-4	0.698	INTRON a
2L	9361660	2L_9361660_SNP [dm3] 2L_9361660_SNP [dm6]	T	G	2.435e^-4	0.698	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	15134591	3R_15134591_SNP [dm3] 3R_19308869_SNP [dm6]	T	C	2.438e^-4	0.698	INTRON Dl
3L	12615760	3L_12615760_SNP [dm3] 3L_12622660_SNP [dm6]	G	A	2.440e^-4	0.698	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25540452	3R_25540452_SNP [dm3] 3R_29714730_SNP [dm6]	T	G	2.442e^-4	0.698	SYNONYMOUS_CODING Obp99d DOWNSTREAM Dup99B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	837693	3L_837693_SNP [dm3] 3L_837693_SNP [dm6]	A	C	2.448e^-4	0.698	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
X	16131771	X_16131771_SNP [dm3] X_16237738_SNP [dm6]	T	A	2.454e^-4	0.698	INTERGENIC
3L	2645611	3L_2645611_SNP [dm3] 3L_2645611_SNP [dm6]	C	A	2.466e^-4	0.698	INTRON CG1143	TF binding site mE1_TFBS_cad
X	12238340	X_12238340_SNP [dm3] X_12344307_SNP [dm6]	G	T	2.472e^-4	0.698	INTERGENIC
2L	8954661	2L_8954661_SNP [dm3] 2L_8954661_SNP [dm6]	G	A	2.473e^-4	0.698	SYNONYMOUS_CODING CG31886	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	17266630	2R_17266630_SNP [dm3] 2R_21379125_SNP [dm6]	A	T	2.474e^-4	0.698	UTR_5_PRIME cv-2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12950029	3R_12950029_DEL [dm3] 3R_17124307_DEL [dm6]	TT	T	2.475e^-4	0.698	UPSTREAM CG45079 INTRON cher
2L	4220852	2L_4220852_SNP [dm3] 2L_4220852_SNP [dm6]	T	C	2.476e^-4	0.698	INTRON ft	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
X	5534927	X_5534927_SNP [dm3] X_5640894_SNP [dm6]	A	G	2.477e^-4	0.698	INTRON CG42492
3L	53117	3L_53117_SNP [dm3] 3L_53117_SNP [dm6]	C	T	2.477e^-4	0.698	DOWNSTREAM CG43149 INTERGENIC
3L	14320848	3L_14320848_SNP [dm3] 3L_14327748_SNP [dm6]	C	T	2.483e^-4	0.698	INTRON fz
3R	8485757	3R_8485757_SNP [dm3] 3R_12660035_SNP [dm6]	C	T	2.484e^-4	0.698	INTRON CG6225	TF binding site mE1_TFBS_cad
3R	9959340	3R_9959340_SNP [dm3] 3R_14133618_SNP [dm6]	C	T	2.487e^-4	0.698	INTERGENIC
X	13934374	X_13934374_SNP [dm3] X_14040341_SNP [dm6]	C	T	2.488e^-4	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25540289	3R_25540289_SNP [dm3] 3R_29714567_SNP [dm6]	G	A	2.490e^-4	0.698	NON_SYNONYMOUS_CODING Obp99d UPSTREAM CR45569 DOWNSTREAM Dup99B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	9770975	2L_9770975_SNP [dm3] 2L_9770975_SNP [dm6]	A	G	2.493e^-4	0.698	NON_SYNONYMOUS_CODING ppk18 DOWNSTREAM ppk16 & 1 other
3L	11132894	3L_11132894_SNP [dm3] 3L_11139794_SNP [dm6]	A	G	2.501e^-4	0.698	INTRON CG32082
3R	2952106	3R_2952106_SNP [dm3] 3R_7126384_SNP [dm6]	G	A	2.507e^-4	0.698	UTR_3_PRIME CG10098 & 1 other
2L	14977708	2L_14977708_SNP [dm3] 2L_14977708_SNP [dm6]	A	T	2.508e^-4	0.698	INTRON mol
2R	156485	2R_156485_SNP [dm3] 2R_4268980_SNP [dm6]	G	T	2.515e^-4	0.698	INTERGENIC
2L	5964680	2L_5964680_SNP [dm3] 2L_5964680_SNP [dm6]	T	C	2.517e^-4	0.698	UPSTREAM psd DOWNSTREAM CG13992 INTRON psd
2L	19802454	2L_19802454_SNP [dm3] 2L_19802454_SNP [dm6]	G	T	2.520e^-4	0.698	INTRON sick
3L	13870686	3L_13870686_SNP [dm3] 3L_13877586_SNP [dm6]	T	G	2.535e^-4	0.698	INTRON dysc
3L	16727022	3L_16727022_SNP [dm3] 3L_16733922_SNP [dm6]	G	T	2.537e^-4	0.698	INTRON CG9701
3L	14957100	3L_14957100_SNP [dm3] 3L_14964000_SNP [dm6]	T	G	2.543e^-4	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
2L	14713434	2L_14713434_SNP [dm3] 2L_14713434_SNP [dm6]	C	G	2.546e^-4	0.698	UPSTREAM CG34165 DOWNSTREAM CG15282 INTERGENIC
X	3894992	X_3894992_SNP [dm3] X_4000959_SNP [dm6]	G	A	2.546e^-4	0.698	DOWNSTREAM CR43298 INTERGENIC
3L	19448906	3L_19448906_SNP [dm3] 3L_19455806_SNP [dm6]	A	G	2.550e^-4	0.698	DOWNSTREAM CR45434 INTERGENIC
2R	12282201	2R_12282201_SNP [dm3] 2R_16394696_SNP [dm6]	C	G	2.576e^-4	0.698	INTRON Sema-2b
3L	17903053	3L_17903053_SNP [dm3] 3L_17909953_SNP [dm6]	C	A	2.578e^-4	0.698	NON_SYNONYMOUS_CODING CG5290 DOWNSTREAM CG14353
3L	18563584	3L_18563584_SNP [dm3] 3L_18570484_SNP [dm6]	A	G	2.588e^-4	0.698	INTRON AstC-R1
3L	14828782	3L_14828782_SNP [dm3] 3L_14835682_SNP [dm6]	A	C	2.590e^-4	0.698	INTRON CG17839
2L	7365708	2L_7365708_SNP [dm3] 2L_7365708_SNP [dm6]	C	T	2.593e^-4	0.698	INTRON Wnt10
3R	5138023	3R_5138023_SNP [dm3] 3R_9312301_SNP [dm6]	T	G	2.598e^-4	0.698	INTRON CG8861	TF binding site BDTNP1_TFBS_twi
3L	11587047	3L_11587047_SNP [dm3] 3L_11593947_SNP [dm6]	T	C	2.609e^-4	0.698	UPSTREAM CR45671 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13841216	2L_13841216_SNP [dm3] 2L_13841216_SNP [dm6]	A	T	2.610e^-4	0.698	SYNONYMOUS_CODING CG33307 INTRON CenG1A
3L	712226	3L_712226_SNP [dm3] 3L_712226_SNP [dm6]	C	A	2.612e^-4	0.698	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	14956379	2L_14956379_SNP [dm3] 2L_14956379_SNP [dm6]	G	T	2.612e^-4	0.698	INTRON CG42313
3L	7257545	3L_7257545_SNP [dm3] 3L_7264445_SNP [dm6]	T	A	2.618e^-4	0.698	UPSTREAM CG14830 INTERGENIC
3L	9714316	3L_9714316_SNP [dm3] 3L_9721216_SNP [dm6]	G	T	2.621e^-4	0.698	NON_SYNONYMOUS_CODING nbs UTR_3_PRIME nbs DOWNSTREAM CG14174	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1603303	2L_1603303_SNP [dm3] 2L_1603303_SNP [dm6]	G	A	2.622e^-4	0.698	SYNONYMOUS_CODING haf INTRON CG31935	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14555445	3L_14555445_SNP [dm3] 3L_14562345_SNP [dm6]	A	T	2.639e^-4	0.698	INTRON CG34039	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
3L	12815785	3L_12815785_SNP [dm3] 3L_12822685_SNP [dm6]	C	T	2.646e^-4	0.698	INTRON CG42588
2R	18540270	2R_18540270_SNP [dm3] 2R_22652765_SNP [dm6]	G	C	2.648e^-4	0.698	SYNONYMOUS_CODING Cyp6d2 UTR_3_PRIME nsr DOWNSTREAM nsr
2L	1602982	2L_1602982_SNP [dm3] 2L_1602982_SNP [dm6]	C	T	2.653e^-4	0.698	SYNONYMOUS_CODING haf INTRON CG31935
3L	4373660	3L_4373660_SNP [dm3] 3L_4373660_SNP [dm6]	T	C	2.654e^-4	0.698	INTRON DopEcR
3R	8429017	3R_8429017_SNP [dm3] 3R_12603295_SNP [dm6]	A	T	2.657e^-4	0.698	INTERGENIC
3L	712423	3L_712423_SNP [dm3] 3L_712423_SNP [dm6]	G	C	2.658e^-4	0.698	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	21921575	X_21921575_SNP [dm3] X_22519739_SNP [dm6]	A	G	2.667e^-4	0.698	INTRON CG17600
2L	8082134	2L_8082134_SNP [dm3] 2L_8082134_SNP [dm6]	A	T	2.669e^-4	0.698	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	13682812	3R_13682812_SNP [dm3] 3R_17857090_SNP [dm6]	G	C	2.671e^-4	0.698	INTRON tinc
3R	6312640	3R_6312640_SNP [dm3] 3R_10486918_SNP [dm6]	C	T	2.675e^-4	0.698	INTERGENIC
2R	11330331	2R_11330331_SNP [dm3] 2R_15442826_SNP [dm6]	A	G	2.678e^-4	0.698	INTRON CG43729
2L	1603828	2L_1603828_INS [dm3] 2L_1603828_INS [dm6]	T	TTT	2.682e^-4	0.698	INTRON CG31935 & 1 other
3L	44155	3L_44155_SNP [dm3] 3L_44155_SNP [dm6]	T	C	2.685e^-4	0.698	INTERGENIC
X	11335637	X_11335637_SNP [dm3] X_11441604_SNP [dm6]	C	T	2.685e^-4	0.698	UPSTREAM Sk1 INTRON Evi5
2R	16644155	2R_16644155_SNP [dm3] 2R_20756650_SNP [dm6]	G	T	2.688e^-4	0.698	INTERGENIC	TF binding site mE1_TFBS_inv
X	13934383	X_13934383_DEL [dm3] X_14040350_DEL [dm6]	TT	T	2.689e^-4	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1239660	2L_1239660_SNP [dm3] 2L_1239660_SNP [dm6]	G	A	2.692e^-4	0.698	UPSTREAM CG5397 INTERGENIC
2R	10887990	2R_10887990_SNP [dm3] 2R_15000485_SNP [dm6]	T	A	2.693e^-4	0.698	INTERGENIC
2R	12282187	2R_12282187_SNP [dm3] 2R_16394682_SNP [dm6]	A	G	2.694e^-4	0.698	INTRON Sema-2b
2R	9147026	2R_9147026_SNP [dm3] 2R_13259521_SNP [dm6]	T	A	2.700e^-4	0.698	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3L	40202	3L_40202_SNP [dm3] 3L_40202_SNP [dm6]	G	C	2.702e^-4	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	8082135	2L_8082135_SNP [dm3] 2L_8082135_SNP [dm6]	A	G	2.707e^-4	0.698	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2R	17332991	2R_17332991_SNP [dm3] 2R_21445486_SNP [dm6]	C	G	2.709e^-4	0.698	INTRON Sdc
2L	18151913	2L_18151913_SNP [dm3] 2L_18151913_SNP [dm6]	T	C	2.712e^-4	0.698	INTRON Socs36E	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Stat92E
2R	6796209	2R_6796209_SNP [dm3] 2R_10908704_SNP [dm6]	T	C	2.718e^-4	0.698	INTERGENIC
2L	9487588	2L_9487588_SNP [dm3] 2L_9487588_SNP [dm6]	A	G	2.721e^-4	0.698	INTERGENIC
X	7893910	X_7893910_SNP [dm3] X_7999877_SNP [dm6]	T	C	2.730e^-4	0.698	INTRON Tbh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4934321	3R_4934321_SNP [dm3] 3R_9108599_SNP [dm6]	G	A	2.735e^-4	0.698	INTRON pum
2L	2919154	2L_2919154_SNP [dm3] 2L_2919154_SNP [dm6]	A	G	2.738e^-4	0.698	INTRON lilli
2R	19304817	2R_19304817_SNP [dm3] 2R_23417294_SNP [dm6]	A	G	2.742e^-4	0.698	DOWNSTREAM CG30411 INTRON CG9812
2R	20031626	2R_20031626_SNP [dm3] 2R_24144103_SNP [dm6]	G	C	2.747e^-4	0.698	INTRON Dat
2L	19469104	2L_19469104_SNP [dm3] 2L_19469104_SNP [dm6]	A	G	2.755e^-4	0.698	UPSTREAM CR45722 DOWNSTREAM CR45723 INTERGENIC
2L	17057425	2L_17057425_INS [dm3] 2L_17057425_INS [dm6]	T	TT	2.763e^-4	0.698	INTERGENIC
3L	6373944	3L_6373944_SNP [dm3] 3L_6380844_SNP [dm6]	A	C	2.765e^-4	0.698	INTERGENIC
3L	12288610	3L_12288610_SNP [dm3] 3L_12295510_SNP [dm6]	G	A	2.767e^-4	0.698	INTRON CG4328
3R	13238570	3R_13238570_SNP [dm3] 3R_17412848_SNP [dm6]	T	G	2.768e^-4	0.698	UPSTREAM CG42821 DOWNSTREAM CG5863 INTERGENIC
2R	14452462	2R_14452462_SNP [dm3] 2R_18564957_SNP [dm6]	A	C	2.770e^-4	0.698	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13712004	2L_13712004_SNP [dm3] 2L_13712004_SNP [dm6]	G	A	2.771e^-4	0.698	INTRON CG31814
2L	7210724	2L_7210724_SNP [dm3] 2L_7210724_SNP [dm6]	T	C	2.773e^-4	0.698	INTRON CG13784
3R	25591874	3R_25591874_SNP [dm3] 3R_29766152_SNP [dm6]	A	C	2.776e^-4	0.698	START_GAINED kay UTR_5_PRIME kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	5534926	X_5534926_SNP [dm3] X_5640893_SNP [dm6]	A	G	2.784e^-4	0.698	INTRON CG42492
3R	13019603	3R_13019603_SNP [dm3] 3R_17193881_SNP [dm6]	A	G	2.787e^-4	0.698	INTRON Mur89F
3L	4715334	3L_4715334_SNP [dm3] 3L_4715334_SNP [dm6]	T	G	2.789e^-4	0.698	INTRON RhoGEF64C
2L	14977694	2L_14977694_SNP [dm3] 2L_14977694_SNP [dm6]	T	A	2.790e^-4	0.698	INTRON mol
2L	14977696	2L_14977696_DEL [dm3] 2L_14977696_DEL [dm6]	TTA	GC	2.790e^-4	0.698	INTRON mol
2L	14977703	2L_14977703_MNP [dm3] 2L_14977703_MNP [dm6]	AAG	GCT	2.790e^-4	0.698	INTRON mol
2L	14977713	2L_14977713_MNP [dm3] 2L_14977713_MNP [dm6]	AAG	TTT	2.790e^-4	0.698	INTRON mol
2L	14977719	2L_14977719_DEL [dm3] 2L_14977719_DEL [dm6]	ACCAAA	G	2.790e^-4	0.698	INTRON mol
2L	14977751	2L_14977751_SNP [dm3] 2L_14977751_SNP [dm6]	A	G	2.790e^-4	0.698	INTRON mol
3L	428311	3L_428311_DEL [dm3] 3L_428311_DEL [dm6]	TT	T	2.797e^-4	0.698	INTERGENIC
2L	14977700	2L_14977700_SNP [dm3] 2L_14977700_SNP [dm6]	T	A	2.799e^-4	0.698	INTRON mol
X	5229116	X_5229116_SNP [dm3] X_5335083_SNP [dm6]	C	A	2.801e^-4	0.698	DOWNSTREAM CanB INTERGENIC
3L	23319297	3L_23319297_SNP [dm3] 3L_23326197_SNP [dm6]	T	G	2.801e^-4	0.698	INTRON alpha-Cat	transposable element FlyBase
3R	13238231	3R_13238231_SNP [dm3] 3R_17412509_SNP [dm6]	C	A	2.807e^-4	0.698	UTR_3_PRIME CG5863 UPSTREAM CG42821
2L	1602803	2L_1602803_SNP [dm3] 2L_1602803_SNP [dm6]	A	T	2.807e^-4	0.698	INTRON CG31935 & 1 other
2L	19598306	2L_19598306_SNP [dm3] 2L_19598306_SNP [dm6]	A	T	2.812e^-4	0.698	INTRON Lar	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4238768	3L_4238768_SNP [dm3] 3L_4238768_SNP [dm6]	C	A	2.812e^-4	0.698	INTERGENIC
3R	8485754	3R_8485754_SNP [dm3] 3R_12660032_SNP [dm6]	T	G	2.814e^-4	0.698	INTRON CG6225	TF binding site mE1_TFBS_cad
3R	25614888	3R_25614888_SNP [dm3] 3R_29789166_SNP [dm6]	T	C	2.815e^-4	0.698	UTR_5_PRIME kay INTRON kay
2L	2593511	2L_2593511_SNP [dm3] 2L_2593511_SNP [dm6]	G	C	2.820e^-4	0.698	DOWNSTREAM CG15394 INTERGENIC
2R	4952874	2R_4952874_SNP [dm3] 2R_9065369_SNP [dm6]	G	A	2.829e^-4	0.698	INTRON ana	regulatory region REDfly_CRMs
2L	19841561	2L_19841561_SNP [dm3] 2L_19841561_SNP [dm6]	C	A	2.830e^-4	0.698	INTRON sick
2L	16135147	2L_16135147_SNP [dm3] 2L_16135147_SNP [dm6]	G	A	2.831e^-4	0.698	DOWNSTREAM CR44871 & 1 other INTRON CG34168
2L	19841857	2L_19841857_SNP [dm3] 2L_19841857_SNP [dm6]	T	C	2.832e^-4	0.698	INTRON sick
3L	7257534	3L_7257534_SNP [dm3] 3L_7264434_SNP [dm6]	T	A	2.834e^-4	0.698	UPSTREAM CG14830 INTERGENIC
2L	19803809	2L_19803809_SNP [dm3] 2L_19803809_SNP [dm6]	C	T	2.840e^-4	0.698	INTRON sick
3L	13488539	3L_13488539_SNP [dm3] 3L_13495439_SNP [dm6]	C	T	2.843e^-4	0.698	UPSTREAM Tgi INTRON Tgi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13626501	2L_13626501_SNP [dm3] 2L_13626501_SNP [dm6]	T	A	2.846e^-4	0.698	INTRON kuz
3L	12287697	3L_12287697_SNP [dm3] 3L_12294597_SNP [dm6]	C	G	2.847e^-4	0.698	INTRON CG4328
3L	12615763	3L_12615763_SNP [dm3] 3L_12622663_SNP [dm6]	T	C	2.850e^-4	0.698	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	24132555	3R_24132555_SNP [dm3] 3R_28306833_SNP [dm6]	A	G	2.853e^-4	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	8372590	2R_8372590_SNP [dm3] 2R_12485085_SNP [dm6]	T	C	2.859e^-4	0.698	INTRON Dh44-R2
3L	3763790	3L_3763790_SNP [dm3] 3L_3763790_SNP [dm6]	A	T	2.862e^-4	0.698	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4238769	3L_4238769_SNP [dm3] 3L_4238769_SNP [dm6]	T	C	2.862e^-4	0.698	INTERGENIC
3L	1828561	3L_1828561_SNP [dm3] 3L_1828561_SNP [dm6]	C	A	2.865e^-4	0.698	INTRON Cpr62Ba
3L	18010104	3L_18010104_SNP [dm3] 3L_18017004_SNP [dm6]	T	G	2.872e^-4	0.698	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
3L	12025599	3L_12025599_SNP [dm3] 3L_12032499_SNP [dm6]	T	C	2.875e^-4	0.698	UPSTREAM CG43993 INTRON rols
2R	16702954	2R_16702954_SNP [dm3] 2R_20815449_SNP [dm6]	A	G	2.878e^-4	0.698	INTERGENIC
X	6161412	X_6161412_INS [dm3] X_6267379_INS [dm6]	T	TATT	2.879e^-4	0.698	UPSTREAM Spt6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	15088562	2R_15088562_SNP [dm3] 2R_19201057_SNP [dm6]	T	A	2.884e^-4	0.698	INTRON hppy
2L	3795176	2L_3795176_SNP [dm3] 2L_3795176_SNP [dm6]	C	G	2.885e^-4	0.698	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1564534	3L_1564534_INS [dm3] 3L_1564534_INS [dm6]	A	AA	2.886e^-4	0.698	UPSTREAM CG12003 INTRON CG7879
2L	7718985	2L_7718985_SNP [dm3] 2L_7718985_SNP [dm6]	T	A	2.898e^-4	0.698	SYNONYMOUS_CODING CG13793 DOWNSTREAM CG13794
2R	3238864	2R_3238864_SNP [dm3] 2R_7351359_SNP [dm6]	A	T	2.899e^-4	0.698	INTRON Dscam1	TF binding site mE1_TFBS_inv
2L	11466510	2L_11466510_SNP [dm3] 2L_11466510_SNP [dm6]	C	T	2.900e^-4	0.698	INTERGENIC
2L	1034963	2L_1034963_SNP [dm3] 2L_1034963_SNP [dm6]	A	G	2.905e^-4	0.698	UPSTREAM IA-2 INTRON IA-2
2R	16315559	2R_16315559_SNP [dm3] 2R_20428054_SNP [dm6]	C	A	2.905e^-4	0.698	INTRON CG12484
2R	19304863	2R_19304863_SNP [dm3] 2R_23417340_SNP [dm6]	C	T	2.908e^-4	0.698	DOWNSTREAM CG30411 INTRON CG9812
2L	8507679	2L_8507679_SNP [dm3] 2L_8507679_SNP [dm6]	T	A	2.912e^-4	0.698	UPSTREAM Dh31 INTERGENIC
3R	15229407	3R_15229407_SNP [dm3] 3R_19403685_SNP [dm6]	G	A	2.912e^-4	0.698	NON_SYNONYMOUS_CODING CG5316 UTR_5_PRIME CG5316 UPSTREAM Ino80	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	26871231	3R_26871231_SNP [dm3] 3R_31045509_SNP [dm6]	A	C	2.914e^-4	0.698	UPSTREAM CG33920 INTRON CanA1
3L	428314	3L_428314_SNP [dm3] 3L_428314_SNP [dm6]	A	T	2.915e^-4	0.698	INTERGENIC
3L	16016122	3L_16016122_SNP [dm3] 3L_16023022_SNP [dm6]	T	C	2.918e^-4	0.698	UPSTREAM Notum INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	5228937	X_5228937_INS [dm3] X_5334904_INS [dm6]	C	CTACACTCGCAAAAAAAAAA...	2.921e^-4	0.698	DOWNSTREAM CanB INTERGENIC
3L	13868754	3L_13868754_SNP [dm3] 3L_13875654_SNP [dm6]	A	T	2.928e^-4	0.698	INTRON dysc
2L	19901797	2L_19901797_DEL [dm3] 2L_19901797_DEL [dm6]	TAAAAACAAAA...	T	2.928e^-4	0.698	INTRON sick
3L	4821762	3L_4821762_DEL [dm3] 3L_4821762_DEL [dm6]	ATTCTAGCACA...	A	2.937e^-4	0.698	INTRON Dhc64C
3L	5474990	3L_5474990_SNP [dm3] 3L_5481890_SNP [dm6]	T	A	2.943e^-4	0.698	NON_SYNONYMOUS_CODING CG4835	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10988812	3L_10988812_SNP [dm3] 3L_10995712_SNP [dm6]	C	A	2.949e^-4	0.698	INTRON klu
3L	11580832	3L_11580832_SNP [dm3] 3L_11587732_SNP [dm6]	A	G	2.950e^-4	0.698	UTR_5_PRIME rt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	19871357	X_19871357_SNP [dm3] X_19977324_SNP [dm6]	C	A	2.951e^-4	0.698	INTERGENIC
2L	3235270	2L_3235270_SNP [dm3] 2L_3235270_SNP [dm6]	T	C	2.952e^-4	0.698	INTERGENIC
3L	9385226	3L_9385226_SNP [dm3] 3L_9392126_SNP [dm6]	T	A	2.953e^-4	0.698	INTRON CG4080	TF binding site mE1_TFBS_HSA
3R	3408993	3R_3408993_SNP [dm3] 3R_7583271_SNP [dm6]	A	G	2.953e^-4	0.698	INTRON CG34127
3L	14931260	3L_14931260_SNP [dm3] 3L_14938160_SNP [dm6]	G	C	2.955e^-4	0.698	INTRON DCX-EMAP
3R	19029858	3R_19029858_SNP [dm3] 3R_23204136_SNP [dm6]	G	T	2.958e^-4	0.698	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_HSA
2R	17474253	2R_17474253_SNP [dm3] 2R_21586748_SNP [dm6]	G	T	2.965e^-4	0.698	INTERGENIC	TF binding site mE1_TFBS_cad
3L	16896011	3L_16896011_SNP [dm3] 3L_16902911_SNP [dm6]	A	T	2.966e^-4	0.698	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo
3R	24353994	3R_24353994_SNP [dm3] 3R_28528272_SNP [dm6]	G	A	2.970e^-4	0.698	NON_SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17641407	2R_17641407_SNP [dm3] 2R_21753902_SNP [dm6]	C	A	2.977e^-4	0.698	INTERGENIC
2R	9147010	2R_9147010_SNP [dm3] 2R_13259505_SNP [dm6]	T	G	2.980e^-4	0.698	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3R	25779128	3R_25779128_SNP [dm3] 3R_29953406_SNP [dm6]	G	A	2.981e^-4	0.698	SYNONYMOUS_CODING TkR99D
3L	19472074	3L_19472074_SNP [dm3] 3L_19478974_SNP [dm6]	G	A	2.983e^-4	0.698	UPSTREAM CR32207 DOWNSTREAM CR42842 INTERGENIC
2R	11320149	2R_11320149_SNP [dm3] 2R_15432644_SNP [dm6]	T	A	2.985e^-4	0.698	INTRON CG43729
3R	15072750	3R_15072750_SNP [dm3] 3R_19247028_SNP [dm6]	C	G	2.986e^-4	0.698	UPSTREAM unc79 DOWNSTREAM CG5217 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17784937	3L_17784937_SNP [dm3] 3L_17791837_SNP [dm6]	C	A	2.988e^-4	0.698	UPSTREAM CG42815 DOWNSTREAM CG42816 INTERGENIC
3R	25314963	3R_25314963_DEL [dm3] 3R_29489241_DEL [dm6]	TT	T	2.996e^-4	0.698	UTR_5_PRIME CG2321 UPSTREAM CG2006	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12697643	2R_12697643_SNP [dm3] 2R_16810138_SNP [dm6]	G	A	2.996e^-4	0.698	UPSTREAM CR44465 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12286246	3L_12286246_SNP [dm3] 3L_12293146_SNP [dm6]	A	G	3.005e^-4	0.698	INTRON CG4328	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	21290634	X_21290634_SNP [dm3] X_21419607_SNP [dm6]	G	A	3.005e^-4	0.698	INTERGENIC
3R	25621372	3R_25621372_SNP [dm3] 3R_29795650_SNP [dm6]	C	T	3.008e^-4	0.698	SYNONYMOUS_CODING sro DOWNSTREAM CG7837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14313189	3L_14313189_SNP [dm3] 3L_14320089_SNP [dm6]	A	G	3.015e^-4	0.698	INTRON fz
2R	12510094	2R_12510094_SNP [dm3] 2R_16622589_SNP [dm6]	C	T	3.016e^-4	0.698	INTRON CG5065	TF binding site mE1_TFBS_cad
3L	4373695	3L_4373695_SNP [dm3] 3L_4373695_SNP [dm6]	A	T	3.034e^-4	0.698	INTRON DopEcR
X	19871242	X_19871242_SNP [dm3] X_19977209_SNP [dm6]	A	G	3.035e^-4	0.698	INTERGENIC
3L	3763804	3L_3763804_SNP [dm3] 3L_3763804_SNP [dm6]	T	C	3.036e^-4	0.698	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16281797	2L_16281797_SNP [dm3] 2L_16281797_SNP [dm6]	C	T	3.038e^-4	0.698	INTRON crp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	9147038	2R_9147038_SNP [dm3] 2R_13259533_SNP [dm6]	G	A	3.039e^-4	0.698	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2L	15960063	2L_15960063_SNP [dm3] 2L_15960063_SNP [dm6]	G	A	3.041e^-4	0.698	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
X	19871890	X_19871890_SNP [dm3] X_19977857_SNP [dm6]	C	T	3.041e^-4	0.698	INTERGENIC
3L	5886015	3L_5886015_SNP [dm3] 3L_5892915_SNP [dm6]	C	G	3.049e^-4	0.698	INTERGENIC
2L	10580968	2L_10580968_SNP [dm3] 2L_10580968_SNP [dm6]	G	T	3.054e^-4	0.698	UTR_3_PRIME CG34161 DOWNSTREAM CG34161 & 1 other INTRON Trim9
3R	13019604	3R_13019604_INS [dm3] 3R_17193882_INS [dm6]	A	AACCTATTGAACCTATTGAA...	3.054e^-4	0.698	INTRON Mur89F
X	13044852	X_13044852_SNP [dm3] X_13150819_SNP [dm6]	C	T	3.062e^-4	0.698	INTRON CG32645
3L	391899	3L_391899_INS [dm3] 3L_391899_INS [dm6]	G	GCCAATCTG	3.071e^-4	0.698	DOWNSTREAM CR45378 INTRON trh
X	19518687	X_19518687_SNP [dm3] X_19624654_SNP [dm6]	C	T	3.073e^-4	0.698	UTR_3_PRIME MKP-4	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10988813	3L_10988813_SNP [dm3] 3L_10995713_SNP [dm6]	A	T	3.077e^-4	0.698	INTRON klu
X	1937110	X_1937110_SNP [dm3] X_2043077_SNP [dm6]	C	T	3.080e^-4	0.698	SYNONYMOUS_CODING CG4325 UPSTREAM Actn & 1 other INTRON CG4313	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	3763951	3L_3763951_SNP [dm3] 3L_3763951_SNP [dm6]	A	G	3.081e^-4	0.698	INTRON CG32264	TF binding site BDTNP1_TFBS_dl
2R	14025195	2R_14025195_SNP [dm3] 2R_18137690_SNP [dm6]	A	G	3.087e^-4	0.698	INTRON Pcl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	4391378	3R_4391378_SNP [dm3] 3R_8565656_SNP [dm6]	G	C	3.095e^-4	0.698	NON_SYNONYMOUS_CODING Cenp-C	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3R	18893945	3R_18893945_SNP [dm3] 3R_23068223_SNP [dm6]	G	A	3.100e^-4	0.698	UPSTREAM CG17111 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15561908	2L_15561908_SNP [dm3] 2L_15561908_SNP [dm6]	G	C	3.103e^-4	0.698	INTRON kek3
3R	15299896	3R_15299896_INS [dm3] 3R_19474174_INS [dm6]	A	AAACA	3.105e^-4	0.698	INTRON Dys
2R	7129375	2R_7129375_SNP [dm3] 2R_11241870_SNP [dm6]	A	C	3.114e^-4	0.698	SYNONYMOUS_CODING Listericin
3L	1720452	3L_1720452_SNP [dm3] 3L_1720452_SNP [dm6]	T	C	3.114e^-4	0.698	DOWNSTREAM CG18171 INTRON drpr
3L	9377513	3L_9377513_SNP [dm3] 3L_9384413_SNP [dm6]	G	A	3.114e^-4	0.698	SYNONYMOUS_CODING Hsp27	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8739266	X_8739266_SNP [dm3] X_8845233_SNP [dm6]	A	C	3.135e^-4	0.698	INTRON CG12075
X	1190943	X_1190943_SNP [dm3] X_1296910_SNP [dm6]	T	C	3.143e^-4	0.698	INTRON DAAM	TF binding site mE1_TFBS_chinmo
2L	8507668	2L_8507668_SNP [dm3] 2L_8507668_SNP [dm6]	G	C	3.146e^-4	0.698	UPSTREAM Dh31 INTERGENIC
2L	8447278	2L_8447278_SNP [dm3] 2L_8447278_SNP [dm6]	T	G	3.148e^-4	0.698	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	15072766	3R_15072766_INS [dm3] 3R_19247044_INS [dm6]	A	ACCATAACTTAGAGGACCA...	3.160e^-4	0.698	UPSTREAM unc79 DOWNSTREAM CG5217 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5263252	2R_5263252_SNP [dm3] 2R_9375747_SNP [dm6]	G	A	3.162e^-4	0.698	INTRON CG13954
2L	7615512	2L_7615512_SNP [dm3] 2L_7615512_SNP [dm6]	G	A	3.165e^-4	0.698	INTRON CG6739
3R	4341305	3R_4341305_SNP [dm3] 3R_8515583_SNP [dm6]	G	T	3.166e^-4	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	9147009	2R_9147009_SNP [dm3] 2R_13259504_SNP [dm6]	T	G	3.168e^-4	0.698	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3R	25593365	3R_25593365_SNP [dm3] 3R_29767643_SNP [dm6]	C	A	3.169e^-4	0.698	INTRON kay	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	698452	2L_698452_SNP [dm3] 2L_698452_SNP [dm6]	C	T	3.171e^-4	0.698	INTRON ds
3R	26320304	3R_26320304_SNP [dm3] 3R_30494582_SNP [dm6]	A	T	3.174e^-4	0.698	INTRON PH4alphaMP
2R	9958271	2R_9958271_SNP [dm3] 2R_14070766_SNP [dm6]	A	G	3.174e^-4	0.698	INTRON Prosap
2R	9958274	2R_9958274_SNP [dm3] 2R_14070769_SNP [dm6]	T	A	3.174e^-4	0.698	INTRON Prosap
X	5116151	X_5116151_INS [dm3] X_5222118_INS [dm6]	G	GCTAGCATCGAACATG...	3.175e^-4	0.698	INTRON CG15465 & 1 other
3R	15072981	3R_15072981_SNP [dm3] 3R_19247259_SNP [dm6]	T	C	3.178e^-4	0.698	UTR_3_PRIME CG5217	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11249354	3R_11249354_SNP [dm3] 3R_15423632_SNP [dm6]	A	G	3.179e^-4	0.698	INTRON CG6118	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19965256	3L_19965256_SNP [dm3] 3L_19972156_SNP [dm6]	T	A	3.181e^-4	0.698	INTRON Ac76E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	14775733	3R_14775733_SNP [dm3] 3R_18950011_SNP [dm6]	G	A	3.184e^-4	0.698	UPSTREAM CG42613 & 1 other INTRON CG42613
3R	13480552	3R_13480552_SNP [dm3] 3R_17654830_SNP [dm6]	C	A	3.195e^-4	0.698	INTRON CG14322	TF binding site BDTNP1_TFBS_dl
2L	5185432	2L_5185432_SNP [dm3] 2L_5185432_SNP [dm6]	C	T	3.198e^-4	0.698	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	486646	2R_486646_SNP [dm3] 2R_4599141_SNP [dm6]	T	C	3.200e^-4	0.698	INTRON p120ctn
2R	15740030	2R_15740030_SNP [dm3] 2R_19852525_SNP [dm6]	G	A	3.200e^-4	0.698	INTERGENIC
X	4535236	X_4535236_SNP [dm3] X_4641203_SNP [dm6]	T	G	3.202e^-4	0.698	UPSTREAM CG3081 DOWNSTREAM CG3062 INTRON CG3081	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4535312	X_4535312_SNP [dm3] X_4641279_SNP [dm6]	C	A	3.202e^-4	0.698	UTR_3_PRIME CG3062 UPSTREAM CG3081 INTRON CG3081	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5978477	2R_5978477_SNP [dm3] 2R_10090972_SNP [dm6]	A	G	3.204e^-4	0.698	INTRON CG2269
X	11409478	X_11409478_SNP [dm3] X_11515445_SNP [dm6]	A	G	3.206e^-4	0.698	INTRON Drak	TF binding site mE1_TFBS_Kr
3R	25590616	3R_25590616_SNP [dm3] 3R_29764894_SNP [dm6]	T	A	3.211e^-4	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10518960	3L_10518960_SNP [dm3] 3L_10525860_SNP [dm6]	T	G	3.211e^-4	0.698	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9176344	X_9176344_SNP [dm3] X_9282311_SNP [dm6]	G	A	3.218e^-4	0.698	INTRON c11.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2645067	3L_2645067_SNP [dm3] 3L_2645067_SNP [dm6]	C	T	3.222e^-4	0.698	UPSTREAM CG1143 INTERGENIC
2R	15189043	2R_15189043_SNP [dm3] 2R_19301538_SNP [dm6]	C	T	3.224e^-4	0.698	INTRON Tab2	TF binding site mE1_TFBS_inv
X	2814939	X_2814939_INS [dm3] X_2920906_INS [dm6]	A	AATA	3.229e^-4	0.698	INTRON kirre & 1 other
3L	7257549	3L_7257549_SNP [dm3] 3L_7264449_SNP [dm6]	T	A	3.230e^-4	0.698	UPSTREAM CG14830 INTERGENIC
3L	2645866	3L_2645866_SNP [dm3] 3L_2645866_SNP [dm6]	A	G	3.236e^-4	0.698	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17710257	2R_17710257_SNP [dm3] 2R_21822752_SNP [dm6]	A	G	3.246e^-4	0.698	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8649114	3R_8649114_INS [dm3] 3R_12823392_INS [dm6]	T	TACAGACGCTCC...	3.257e^-4	0.698	INTERGENIC
3R	25844950	3R_25844950_SNP [dm3] 3R_30019228_SNP [dm6]	G	A	3.262e^-4	0.698	SYNONYMOUS_CODING Mgat2	TF binding site mE1_TFBS_chinmo
2R	12550294	2R_12550294_DEL [dm3] 2R_16662789_DEL [dm6]	TT	T	3.265e^-4	0.698	INTRON Picot
2L	17289734	2L_17289734_SNP [dm3] 2L_17289734_SNP [dm6]	G	C	3.266e^-4	0.698	INTERGENIC
2L	1675714	2L_1675714_SNP [dm3] 2L_1675714_SNP [dm6]	T	A	3.269e^-4	0.698	INTRON chinmo
2L	1675720	2L_1675720_SNP [dm3] 2L_1675720_SNP [dm6]	C	G	3.269e^-4	0.698	INTRON chinmo
2R	14325980	2R_14325980_SNP [dm3] 2R_18438475_SNP [dm6]	A	T	3.270e^-4	0.698	INTRON CG30118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16376690	2L_16376690_DEL [dm3] 2L_16376690_DEL [dm6]	AATATATAT	A	3.276e^-4	0.698	INTERGENIC
3L	712337	3L_712337_SNP [dm3] 3L_712337_SNP [dm6]	G	T	3.283e^-4	0.698	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	8507658	2L_8507658_SNP [dm3] 2L_8507658_SNP [dm6]	G	C	3.285e^-4	0.698	UPSTREAM Dh31 INTERGENIC
3L	2646601	3L_2646601_SNP [dm3] 3L_2646601_SNP [dm6]	T	C	3.290e^-4	0.698	UTR_3_PRIME CG1143	TF binding site mE1_TFBS_cad
2L	17292415	2L_17292415_DEL [dm3] 2L_17292415_DEL [dm6]	AGGTATGCCTGCTTCAAGTC...	A	3.293e^-4	0.698	UPSTREAM CG6380 INTERGENIC
X	6947207	X_6947207_SNP [dm3] X_7053174_SNP [dm6]	T	C	3.297e^-4	0.698	INTRON CG12541
2R	254918	2R_254918_SNP [dm3] 2R_4367413_SNP [dm6]	C	T	3.302e^-4	0.698	INTRON Gprk1
3R	13211899	3R_13211899_SNP [dm3] 3R_17386177_SNP [dm6]	C	A	3.302e^-4	0.698	SYNONYMOUS_CODING lute INTRON Brf & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25978142	3R_25978142_SNP [dm3] 3R_30152420_SNP [dm6]	T	C	3.304e^-4	0.698	DOWNSTREAM CG11498 INTRON CG15529	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13751874	3L_13751874_SNP [dm3] 3L_13758774_SNP [dm6]	C	A	3.304e^-4	0.698	INTRON bru-3
2L	17818167	2L_17818167_SNP [dm3] 2L_17818167_SNP [dm6]	T	A	3.310e^-4	0.698	INTRON CadN2
3R	24132562	3R_24132562_SNP [dm3] 3R_28306840_SNP [dm6]	A	T	3.312e^-4	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15090507	2L_15090507_SNP [dm3] 2L_15090507_SNP [dm6]	T	C	3.313e^-4	0.698	INTRON CG15270
2L	11686657	2L_11686657_SNP [dm3] 2L_11686657_SNP [dm6]	T	C	3.315e^-4	0.698	INTERGENIC
2R	13195840	2R_13195840_SNP [dm3] 2R_17308335_SNP [dm6]	G	T	3.315e^-4	0.698	INTRON mbl
2R	14339348	2R_14339348_SNP [dm3] 2R_18451843_SNP [dm6]	C	T	3.320e^-4	0.698	SYNONYMOUS_CODING CG5190 UPSTREAM Prp19 DOWNSTREAM CG17669	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25570756	3R_25570756_SNP [dm3] 3R_29745034_SNP [dm6]	A	C	3.324e^-4	0.698	START_GAINED CG7609 UTR_5_PRIME CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	17799968	2L_17799968_SNP [dm3] 2L_17799968_SNP [dm6]	A	G	3.329e^-4	0.698	INTRON CadN2
X	7726462	X_7726462_SNP [dm3] X_7832429_SNP [dm6]	G	T	3.331e^-4	0.698	INTRON CG1402
3R	25825013	3R_25825013_SNP [dm3] 3R_29999291_SNP [dm6]	T	C	3.333e^-4	0.698	SYNONYMOUS_CODING CG11504 UPSTREAM CG34298	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9146868	2R_9146868_SNP [dm3] 2R_13259363_SNP [dm6]	C	T	3.336e^-4	0.698	UPSTREAM CG42319 DOWNSTREAM CG10799 INTERGENIC
2L	15090500	2L_15090500_SNP [dm3] 2L_15090500_SNP [dm6]	T	A	3.341e^-4	0.698	INTRON CG15270
3L	8420167	3L_8420167_SNP [dm3] 3L_8427067_SNP [dm6]	A	G	3.346e^-4	0.698	INTRON Cbl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9377228	3L_9377228_SNP [dm3] 3L_9384128_SNP [dm6]	A	G	3.351e^-4	0.698	UTR_5_PRIME Hsp27	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	14813646	3L_14813646_SNP [dm3] 3L_14820546_SNP [dm6]	G	A	3.353e^-4	0.698	INTRON CG17839
2L	2081492	2L_2081492_SNP [dm3] 2L_2081492_SNP [dm6]	G	C	3.355e^-4	0.698	UPSTREAM CR44808 DOWNSTREAM CG12674 INTRON dpr3
3R	25825097	3R_25825097_SNP [dm3] 3R_29999375_SNP [dm6]	A	G	3.365e^-4	0.698	SYNONYMOUS_CODING CG11504 UPSTREAM CG34298	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25917282	3R_25917282_SNP [dm3] 3R_30091560_SNP [dm6]	G	A	3.376e^-4	0.698	INTRON sima
3R	4514508	3R_4514508_INS [dm3] 3R_8688786_INS [dm6]	G	GG	3.377e^-4	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6898563	X_6898563_SNP [dm3] X_7004530_SNP [dm6]	T	C	3.378e^-4	0.698	DOWNSTREAM Inx2 INTRON Inx7
2L	15561903	2L_15561903_SNP [dm3] 2L_15561903_SNP [dm6]	G	A	3.382e^-4	0.698	INTRON kek3
3L	18694762	3L_18694762_SNP [dm3] 3L_18701662_SNP [dm6]	C	G	3.384e^-4	0.698	INTERGENIC
3R	5448651	3R_5448651_SNP [dm3] 3R_9622929_SNP [dm6]	A	T	3.398e^-4	0.698	UPSTREAM CG8312 INTRON CG8312
3R	17851025	3R_17851025_SNP [dm3] 3R_22025303_SNP [dm6]	A	G	3.398e^-4	0.698	SYNONYMOUS_CODING CG6028 DOWNSTREAM mRpL35 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	16202346	3L_16202346_SNP [dm3] 3L_16209246_SNP [dm6]	C	T	3.400e^-4	0.698	INTERGENIC	TF binding site mE1_TFBS_cad
3L	10774650	3L_10774650_SNP [dm3] 3L_10781550_SNP [dm6]	G	A	3.401e^-4	0.698	INTERGENIC
2R	18815353	2R_18815353_SNP [dm3] 2R_22927830_SNP [dm6]	A	C	3.408e^-4	0.698	UTR_3_PRIME CG42678 UPSTREAM CG42678 INTRON CG42678	TF binding site mE1_TFBS_cad
3R	8429011	3R_8429011_SNP [dm3] 3R_12603289_SNP [dm6]	A	G	3.412e^-4	0.698	INTERGENIC
2L	1604145	2L_1604145_SNP [dm3] 2L_1604145_SNP [dm6]	C	T	3.419e^-4	0.698	INTRON CG31935 & 1 other
2L	16135142	2L_16135142_SNP [dm3] 2L_16135142_SNP [dm6]	C	T	3.430e^-4	0.698	DOWNSTREAM CR44871 & 1 other INTRON CG34168
2L	15561904	2L_15561904_SNP [dm3] 2L_15561904_SNP [dm6]	G	A	3.431e^-4	0.698	INTRON kek3
2R	9147063	2R_9147063_SNP [dm3] 2R_13259558_SNP [dm6]	G	A	3.434e^-4	0.698	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3L	12376155	3L_12376155_SNP [dm3] 3L_12383055_SNP [dm6]	G	A	3.438e^-4	0.698	INTRON Ncc69
2L	15061146	2L_15061146_DEL [dm3] 2L_15061146_DEL [dm6]	TG	A	3.440e^-4	0.698	UPSTREAM vas & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	39998	3L_39998_SNP [dm3] 3L_39998_SNP [dm6]	G	T	3.442e^-4	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_inv mE1_TFBS_Trl
3L	11599845	3L_11599845_SNP [dm3] 3L_11606745_SNP [dm6]	T	C	3.447e^-4	0.698	SYNONYMOUS_CODING CG6091
X	21069769	X_21069769_INS [dm3] X_21198742_INS [dm6]	C	CTCTAATTCCGCACCGCCGT...	3.447e^-4	0.698	INTERGENIC
2L	13879663	2L_13879663_SNP [dm3] 2L_13879663_SNP [dm6]	C	A	3.452e^-4	0.698	SYNONYMOUS_CODING CenG1A INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12615786	3L_12615786_SNP [dm3] 3L_12622686_SNP [dm6]	G	A	3.455e^-4	0.698	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	15589885	3R_15589885_SNP [dm3] 3R_19764163_SNP [dm6]	A	C	3.455e^-4	0.698	INTRON GluClalpha
3R	24014751	3R_24014751_SNP [dm3] 3R_28189029_SNP [dm6]	A	G	3.457e^-4	0.698	INTRON CG34354
2L	17328469	2L_17328469_SNP [dm3] 2L_17328469_SNP [dm6]	A	T	3.488e^-4	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	412160	3L_412160_INS [dm3] 3L_412160_INS [dm6]	A	AAATACACATA...	3.491e^-4	0.698	INTERGENIC
X	10569471	X_10569471_SNP [dm3] X_10675438_SNP [dm6]	A	C	3.494e^-4	0.698	INTRON X11Lbeta
3L	16648597	3L_16648597_SNP [dm3] 3L_16655497_SNP [dm6]	G	C	3.504e^-4	0.698	INTRON Baldspot
3L	7010422	3L_7010422_SNP [dm3] 3L_7017322_SNP [dm6]	T	A	3.508e^-4	0.698	INTRON Mp
X	13258148	X_13258148_SNP [dm3] X_13364115_SNP [dm6]	A	G	3.513e^-4	0.698	NON_SYNONYMOUS_CODING Syt12	TF binding site BDTNP1_TFBS_sna
2R	12282055	2R_12282055_SNP [dm3] 2R_16394550_SNP [dm6]	G	A	3.516e^-4	0.698	INTRON Sema-2b
3R	25570319	3R_25570319_SNP [dm3] 3R_29744597_SNP [dm6]	A	G	3.516e^-4	0.698	SYNONYMOUS_CODING CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26618148	3R_26618148_SNP [dm3] 3R_30792426_SNP [dm6]	T	G	3.523e^-4	0.698	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
2L	19802451	2L_19802451_SNP [dm3] 2L_19802451_SNP [dm6]	T	G	3.536e^-4	0.698	INTRON sick
2R	4952865	2R_4952865_SNP [dm3] 2R_9065360_SNP [dm6]	G	A	3.542e^-4	0.698	INTRON ana	regulatory region REDfly_CRMs
3R	21442930	3R_21442930_SNP [dm3] 3R_25617208_SNP [dm6]	G	A	3.543e^-4	0.698	INTRON Npl4	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
X	17411604	X_17411604_SNP [dm3] X_17517571_SNP [dm6]	T	A	3.546e^-4	0.698	INTRON CG43658
3R	18893931	3R_18893931_SNP [dm3] 3R_23068209_SNP [dm6]	C	T	3.550e^-4	0.698	UPSTREAM CG17111 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	10908770	X_10908770_SNP [dm3] X_11014737_SNP [dm6]	G	T	3.551e^-4	0.698	INTRON CG42339
2R	14755578	2R_14755578_SNP [dm3] 2R_18868073_SNP [dm6]	A	G	3.554e^-4	0.698	SYNONYMOUS_CODING CG43109 DOWNSTREAM DptB
2R	17696524	2R_17696524_SNP [dm3] 2R_21809019_SNP [dm6]	T	C	3.555e^-4	0.698	INTERGENIC
X	4782308	X_4782308_SNP [dm3] X_4888275_SNP [dm6]	T	C	3.556e^-4	0.698	INTRON CG42594	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	19736664	3R_19736664_SNP [dm3] 3R_23910942_SNP [dm6]	C	T	3.560e^-4	0.698	INTRON sba
X	11409369	X_11409369_SNP [dm3] X_11515336_SNP [dm6]	T	G	3.563e^-4	0.698	INTRON Drak	TF binding site mE1_TFBS_Kr
2L	14246210	2L_14246210_SNP [dm3] 2L_14246210_SNP [dm6]	C	T	3.565e^-4	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	19798779	2L_19798779_SNP [dm3] 2L_19798779_SNP [dm6]	C	A	3.569e^-4	0.698	INTRON sick
3L	3763920	3L_3763920_SNP [dm3] 3L_3763920_SNP [dm6]	A	C	3.571e^-4	0.698	INTRON CG32264	TF binding site BDTNP1_TFBS_dl
3L	7479852	3L_7479852_SNP [dm3] 3L_7486752_SNP [dm6]	T	G	3.573e^-4	0.698	INTRON mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17264604	X_17264604_SNP [dm3] X_17370571_SNP [dm6]	A	T	3.573e^-4	0.698	INTERGENIC
3L	16449068	3L_16449068_SNP [dm3] 3L_16455968_SNP [dm6]	T	C	3.573e^-4	0.698	INTRON CG33158	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11132648	3L_11132648_SNP [dm3] 3L_11139548_SNP [dm6]	T	C	3.577e^-4	0.698	INTRON CG32082
3R	13235004	3R_13235004_SNP [dm3] 3R_17409282_SNP [dm6]	T	C	3.583e^-4	0.698	UTR_3_PRIME CG17283 UPSTREAM CG5860
X	10543748	X_10543748_SNP [dm3] X_10649715_SNP [dm6]	G	C	3.584e^-4	0.698	INTRON X11Lbeta
2L	4863592	2L_4863592_SNP [dm3] 2L_4863592_SNP [dm6]	C	G	3.592e^-4	0.698	INTRON pog
2L	16237157	2L_16237157_SNP [dm3] 2L_16237157_SNP [dm6]	A	G	3.598e^-4	0.698	SYNONYMOUS_CODING CG42817
3R	25566651	3R_25566651_SNP [dm3] 3R_29740929_SNP [dm6]	T	C	3.598e^-4	0.698	SYNONYMOUS_CODING CG1969
3L	12025589	3L_12025589_SNP [dm3] 3L_12032489_SNP [dm6]	G	A	3.599e^-4	0.698	UPSTREAM CG43993 INTRON rols
2R	11671705	2R_11671705_SNP [dm3] 2R_15784200_SNP [dm6]	G	T	3.600e^-4	0.698	INTRON Zasp52	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12446661	3L_12446661_SNP [dm3] 3L_12453561_SNP [dm6]	A	G	3.601e^-4	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_Kr
X	13249469	X_13249469_INS [dm3] X_13355436_INS [dm6]	A	AGTGATGGTAAAAAGAA...	3.604e^-4	0.698	INTERGENIC
3L	1828555	3L_1828555_SNP [dm3] 3L_1828555_SNP [dm6]	C	A	3.610e^-4	0.698	INTRON Cpr62Ba
X	17264591	X_17264591_SNP [dm3] X_17370558_SNP [dm6]	A	T	3.618e^-4	0.698	INTERGENIC
2L	14695013	2L_14695013_SNP [dm3] 2L_14695013_SNP [dm6]	A	T	3.623e^-4	0.698	INTERGENIC
3R	17953466	3R_17953466_SNP [dm3] 3R_22127744_SNP [dm6]	C	A	3.626e^-4	0.698	INTRON CG42390
X	3324729	X_3324729_SNP [dm3] X_3430696_SNP [dm6]	C	T	3.630e^-4	0.698	INTRON CR44999 & 1 other
2R	10407397	2R_10407397_SNP [dm3] 2R_14519892_SNP [dm6]	A	T	3.632e^-4	0.698	INTERGENIC
3L	428281	3L_428281_SNP [dm3] 3L_428281_SNP [dm6]	T	A	3.635e^-4	0.698	INTERGENIC
3R	25130766	3R_25130766_SNP [dm3] 3R_29305044_SNP [dm6]	T	A	3.655e^-4	0.698	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15561942	2L_15561942_SNP [dm3] 2L_15561942_SNP [dm6]	G	A	3.660e^-4	0.698	INTRON kek3
2L	10924785	2L_10924785_SNP [dm3] 2L_10924785_SNP [dm6]	G	C	3.669e^-4	0.698	INTRON dpr2
3L	2645026	3L_2645026_SNP [dm3] 3L_2645026_SNP [dm6]	T	A	3.677e^-4	0.698	UPSTREAM CG1143 INTERGENIC
2R	11329150	2R_11329150_SNP [dm3] 2R_15441645_SNP [dm6]	A	G	3.678e^-4	0.698	INTRON CG43729
3R	12080176	3R_12080176_SNP [dm3] 3R_16254454_SNP [dm6]	G	C	3.678e^-4	0.698	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	4373661	3L_4373661_SNP [dm3] 3L_4373661_SNP [dm6]	C	T	3.679e^-4	0.698	INTRON DopEcR
2R	14856363	2R_14856363_SNP [dm3] 2R_18968858_SNP [dm6]	T	C	3.680e^-4	0.698	DOWNSTREAM prod INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21150049	X_21150049_SNP [dm3] X_21279022_SNP [dm6]	C	G	3.682e^-4	0.698	INTRON CG32521
2L	17297572	2L_17297572_SNP [dm3] 2L_17297572_SNP [dm6]	T	C	3.683e^-4	0.698	INTERGENIC
3R	5448643	3R_5448643_SNP [dm3] 3R_9622921_SNP [dm6]	C	T	3.688e^-4	0.698	UPSTREAM CG8312 INTRON CG8312
2L	767212	2L_767212_SNP [dm3] 2L_767212_SNP [dm6]	T	C	3.690e^-4	0.698	INTERGENIC
2R	12282143	2R_12282143_SNP [dm3] 2R_16394638_SNP [dm6]	G	A	3.691e^-4	0.698	INTRON Sema-2b
3R	14950843	3R_14950843_SNP [dm3] 3R_19125121_SNP [dm6]	A	G	3.694e^-4	0.698	SYNONYMOUS_CODING CG6040	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	2705501	3R_2705501_SNP [dm3] 3R_6879779_SNP [dm6]	T	G	3.698e^-4	0.698	INTRON CR44931	regulatory region FlyBase REDfly_CRMs
2L	17286077	2L_17286077_INS [dm3] 2L_17286077_INS [dm6]	A	AATGAAATGAAATAATGAAA...	3.703e^-4	0.698	UPSTREAM CG15140 INTERGENIC
2R	13173177	2R_13173177_SNP [dm3] 2R_17285672_SNP [dm6]	G	T	3.716e^-4	0.698	INTRON mbl
X	6745217	X_6745217_DEL [dm3] X_6851184_DEL [dm6]	GCTATAACTGACAAATAT...	A	3.717e^-4	0.698	UTR_3_PRIME CG4558 DOWNSTREAM CG14434 INTRON CG4558
2R	8372602	2R_8372602_SNP [dm3] 2R_12485097_SNP [dm6]	C	A	3.735e^-4	0.698	INTRON Dh44-R2
2R	15189116	2R_15189116_SNP [dm3] 2R_19301611_SNP [dm6]	G	T	3.741e^-4	0.698	INTRON Tab2	TF binding site mE1_TFBS_inv
3L	1564511	3L_1564511_SNP [dm3] 3L_1564511_SNP [dm6]	A	G	3.751e^-4	0.698	UPSTREAM CG12003 INTRON CG7879
2R	13176679	2R_13176679_SNP [dm3] 2R_17289174_SNP [dm6]	G	C	3.754e^-4	0.698	INTRON mbl
2R	16385841	2R_16385841_SNP [dm3] 2R_20498336_SNP [dm6]	G	T	3.767e^-4	0.698	INTERGENIC
2R	11976340	2R_11976340_SNP [dm3] 2R_16088835_SNP [dm6]	G	T	3.770e^-4	0.698	INTRON Dg
3L	11020856	3L_11020856_DEL [dm3] 3L_11027756_DEL [dm6]	TA	T	3.773e^-4	0.698	DOWNSTREAM CG32079 INTRON CG32081
3R	11246805	3R_11246805_DEL [dm3] 3R_15421083_DEL [dm6]	TT	A	3.780e^-4	0.698	DOWNSTREAM CG6118 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
2L	5558559	2L_5558559_SNP [dm3] 2L_5558559_SNP [dm6]	G	A	3.783e^-4	0.698	SYNONYMOUS_CODING GluRIIA UPSTREAM GluRIIB
2L	5559990	2L_5559990_SNP [dm3] 2L_5559990_SNP [dm6]	C	T	3.783e^-4	0.698	DOWNSTREAM GluRIIA INTRON GluRIIB
2R	12611638	2R_12611638_SNP [dm3] 2R_16724133_SNP [dm6]	G	A	3.785e^-4	0.698	INTRON CG30463
3L	44987	3L_44987_DEL [dm3] 3L_44987_DEL [dm6]	AAATAAATAAAA...	CCAATATT	3.792e^-4	0.698	INTERGENIC
3R	14933478	3R_14933478_SNP [dm3] 3R_19107756_SNP [dm6]	T	A	3.801e^-4	0.698	INTRON CG6040
X	17125002	X_17125002_SNP [dm3] X_17230969_SNP [dm6]	C	T	3.802e^-4	0.698	INTRON CG10597	TF binding site mE1_TFBS_chinmo
3L	14812640	3L_14812640_SNP [dm3] 3L_14819540_SNP [dm6]	G	A	3.807e^-4	0.698	INTRON CG17839
X	19995797	X_19995797_SNP [dm3] X_20101764_SNP [dm6]	C	A	3.811e^-4	0.698	INTERGENIC	transposable element FlyBase
2R	8144149	2R_8144149_SNP [dm3] 2R_12256644_SNP [dm6]	T	A	3.814e^-4	0.698	UPSTREAM Vha36-2 DOWNSTREAM CG13168 INTERGENIC
3L	4534212	3L_4534212_SNP [dm3] 3L_4534212_SNP [dm6]	G	T	3.817e^-4	0.698	INTRON CG11353
3L	712501	3L_712501_SNP [dm3] 3L_712501_SNP [dm6]	C	G	3.819e^-4	0.698	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	10417886	2R_10417886_SNP [dm3] 2R_14530381_SNP [dm6]	C	A	3.821e^-4	0.698	INTRON ttv
3R	16890622	3R_16890622_SNP [dm3] 3R_21064900_SNP [dm6]	G	A	3.826e^-4	0.698	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
2L	19901820	2L_19901820_SNP [dm3] 2L_19901820_SNP [dm6]	G	T	3.835e^-4	0.698	INTRON sick
2L	6246307	2L_6246307_SNP [dm3] 2L_6246307_SNP [dm6]	G	T	3.839e^-4	0.698	INTERGENIC
3R	4487071	3R_4487071_SNP [dm3] 3R_8661349_SNP [dm6]	T	C	3.841e^-4	0.698	NON_SYNONYMOUS_CODING p UPSTREAM bel
2R	11718340	2R_11718340_SNP [dm3] 2R_15830835_SNP [dm6]	C	T	3.843e^-4	0.698	INTRON tun & 1 other	regulatory region REDfly_CRMs
3L	722590	3L_722590_SNP [dm3] 3L_722590_SNP [dm6]	A	T	3.846e^-4	0.698	INTERGENIC
3L	11132647	3L_11132647_SNP [dm3] 3L_11139547_SNP [dm6]	T	C	3.857e^-4	0.698	INTRON CG32082
2L	19835275	2L_19835275_SNP [dm3] 2L_19835275_SNP [dm6]	C	T	3.858e^-4	0.698	INTRON sick
3L	443138	3L_443138_SNP [dm3] 3L_443138_SNP [dm6]	C	T	3.860e^-4	0.698	NON_SYNONYMOUS_CODING klar INTRON klar	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv

By genomic position
Variant impact
Gene name

Wing_Width phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results