DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.231e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.04717

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	4.7373	0.0936

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2633 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	14813948	3L_14813948_SNP [dm3] 3L_14820848_SNP [dm6]	G	A	1.507e^-6	0.474	INTRON CG17839
2R	19127148	2R_19127148_SNP [dm3] 2R_23239625_SNP [dm6]	T	G	1.630e^-6	0.474	INTERGENIC
3L	15483312	3L_15483312_SNP [dm3] 3L_15490212_SNP [dm6]	A	G	1.886e^-6	0.474	INTERGENIC
3L	712385	3L_712385_DEL [dm3] 3L_712385_DEL [dm6]	TA	T	2.217e^-6	0.474	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712399	3L_712399_SNP [dm3] 3L_712399_SNP [dm6]	A	T	2.290e^-6	0.474	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	16896011	3L_16896011_SNP [dm3] 3L_16902911_SNP [dm6]	A	T	2.509e^-6	0.474	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo
3R	5121979	3R_5121979_SNP [dm3] 3R_9296257_SNP [dm6]	T	G	2.514e^-6	0.474	INTRON CG8861
3L	712376	3L_712376_SNP [dm3] 3L_712376_SNP [dm6]	G	A	2.830e^-6	0.474	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	15903063	2R_15903063_SNP [dm3] 2R_20015558_SNP [dm6]	A	C	3.102e^-6	0.474	DOWNSTREAM CR44629 & 1 other INTERGENIC
3L	712384	3L_712384_SNP [dm3] 3L_712384_SNP [dm6]	T	C	3.180e^-6	0.474	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	13600672	3R_13600672_SNP [dm3] 3R_17774950_SNP [dm6]	C	T	3.825e^-6	0.474	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14489486	3L_14489486_SNP [dm3] 3L_14496386_SNP [dm6]	A	C	3.867e^-6	0.474	INTRON bbg	TF binding site mE1_TFBS_cad
3L	14489495	3L_14489495_SNP [dm3] 3L_14496395_SNP [dm6]	G	A	3.867e^-6	0.474	INTRON bbg	TF binding site mE1_TFBS_cad
3L	712423	3L_712423_SNP [dm3] 3L_712423_SNP [dm6]	G	C	3.940e^-6	0.474	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	14489497	3L_14489497_SNP [dm3] 3L_14496397_SNP [dm6]	T	A	3.974e^-6	0.474	INTRON bbg	TF binding site mE1_TFBS_cad
3L	14489539	3L_14489539_INS [dm3] 3L_14496439_INS [dm6]	A	ATTTTCTA	4.548e^-6	0.474	INTRON bbg
3L	712348	3L_712348_SNP [dm3] 3L_712348_SNP [dm6]	G	T	4.610e^-6	0.474	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	15697740	2R_15697740_SNP [dm3] 2R_19810235_SNP [dm6]	T	G	4.854e^-6	0.474	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	20187373	3L_20187373_SNP [dm3] 3L_20194273_SNP [dm6]	G	T	4.867e^-6	0.474	INTRON CG42674
3L	712388	3L_712388_DEL [dm3] 3L_712388_DEL [dm6]	AAT	A	5.176e^-6	0.474	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	17333598	2L_17333598_SNP [dm3] 2L_17333598_SNP [dm6]	G	A	5.305e^-6	0.474	INTERGENIC
3L	15483419	3L_15483419_SNP [dm3] 3L_15490319_SNP [dm6]	T	A	6.209e^-6	0.484	INTERGENIC
3L	15483333	3L_15483333_SNP [dm3] 3L_15490233_SNP [dm6]	T	C	6.637e^-6	0.484	INTERGENIC
2L	9443434	2L_9443434_SNP [dm3] 2L_9443434_SNP [dm6]	C	T	7.006e^-6	0.484	INTRON numb
2R	13415564	2R_13415564_SNP [dm3] 2R_17528059_SNP [dm6]	G	A	7.181e^-6	0.484	SYNONYMOUS_CODING Patronin
3L	1109916	3L_1109916_SNP [dm3] 3L_1109916_SNP [dm6]	C	T	7.388e^-6	0.484	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	13570329	3R_13570329_SNP [dm3] 3R_17744607_SNP [dm6]	A	C	8.020e^-6	0.484	INTRON TyrRII	TF binding site mE1_TFBS_cad
X	7613485	X_7613485_SNP [dm3] X_7719452_SNP [dm6]	G	A	8.136e^-6	0.484	INTERGENIC
X	20262267	X_20262267_SNP [dm3] X_20391240_SNP [dm6]	A	G	8.488e^-6	0.484	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1103424	3L_1103424_DEL [dm3] 3L_1103424_DEL [dm6]	CC	C	8.590e^-6	0.484	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	712319	3L_712319_INS [dm3] 3L_712319_INS [dm6]	C	CA	8.632e^-6	0.484	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712342	3L_712342_SNP [dm3] 3L_712342_SNP [dm6]	A	T	8.632e^-6	0.484	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712455	3L_712455_SNP [dm3] 3L_712455_SNP [dm6]	C	T	8.658e^-6	0.484	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712337	3L_712337_SNP [dm3] 3L_712337_SNP [dm6]	G	T	9.085e^-6	0.484	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712235	3L_712235_SNP [dm3] 3L_712235_SNP [dm6]	C	T	9.261e^-6	0.484	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	13553816	3L_13553816_DEL [dm3] 3L_13560716_DEL [dm6]	GTCGACGTAGCGACACT...	G	9.299e^-6	0.484	INTRON bru-3
3L	17624822	3L_17624822_SNP [dm3] 3L_17631722_SNP [dm6]	G	C	9.934e^-6	0.492	DOWNSTREAM CG7510 EXON CR44566
3R	3469607	3R_3469607_SNP [dm3] 3R_7643885_SNP [dm6]	C	T	9.969e^-6	0.492	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	712322	3L_712322_SNP [dm3] 3L_712322_SNP [dm6]	A	G	1.053e^-5	0.506	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	13415561	2R_13415561_SNP [dm3] 2R_17528056_SNP [dm6]	A	G	1.104e^-5	0.506	SYNONYMOUS_CODING Patronin
3R	27128046	3R_27128046_SNP [dm3] 3R_31302324_SNP [dm6]	C	T	1.129e^-5	0.506	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_inv
X	17503877	X_17503877_SNP [dm3] X_17609844_SNP [dm6]	G	T	1.159e^-5	0.506	INTERGENIC
3L	2645866	3L_2645866_SNP [dm3] 3L_2645866_SNP [dm6]	A	G	1.165e^-5	0.506	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	712335	3L_712335_SNP [dm3] 3L_712335_SNP [dm6]	T	A	1.244e^-5	0.506	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	9463941	2L_9463941_SNP [dm3] 2L_9463941_SNP [dm6]	T	C	1.265e^-5	0.506	UTR_3_PRIME numb DOWNSTREAM numb
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	1.273e^-5	0.506	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14489501	3L_14489501_DEL [dm3] 3L_14496401_DEL [dm6]	TA	T	1.274e^-5	0.506	INTRON bbg	TF binding site mE1_TFBS_cad
3R	13600157	3R_13600157_SNP [dm3] 3R_17774435_SNP [dm6]	T	G	1.295e^-5	0.506	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	1.508e^-5	0.519	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14489459	3L_14489459_SNP [dm3] 3L_14496359_SNP [dm6]	G	C	1.573e^-5	0.519	INTRON bbg	TF binding site mE1_TFBS_cad
2R	8137681	2R_8137681_SNP [dm3] 2R_12250176_SNP [dm6]	A	C	1.603e^-5	0.519	INTERGENIC
3L	712377	3L_712377_SNP [dm3] 3L_712377_SNP [dm6]	A	C	1.637e^-5	0.519	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	13557427	3L_13557427_INS [dm3] 3L_13564327_INS [dm6]	G	TA	1.658e^-5	0.519	INTRON bru-3
3L	13557430	3L_13557430_DEL [dm3] 3L_13564330_DEL [dm6]	GTTT	G	1.658e^-5	0.519	INTRON bru-3
3L	14376180	3L_14376180_SNP [dm3] 3L_14383080_SNP [dm6]	C	T	1.677e^-5	0.519	UTR_3_PRIME CG43120
3L	712323	3L_712323_SNP [dm3] 3L_712323_SNP [dm6]	T	A	1.689e^-5	0.519	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	5702213	X_5702213_SNP [dm3] X_5808180_SNP [dm6]	T	G	1.736e^-5	0.519	UPSTREAM Prosbeta2R1 INTERGENIC
2R	4956241	2R_4956241_SNP [dm3] 2R_9068736_SNP [dm6]	T	G	1.737e^-5	0.519	UPSTREAM ana INTRON ana
3L	712226	3L_712226_SNP [dm3] 3L_712226_SNP [dm6]	C	A	1.779e^-5	0.519	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	14555445	3L_14555445_SNP [dm3] 3L_14562345_SNP [dm6]	A	T	1.779e^-5	0.519	INTRON CG34039	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
X	7619313	X_7619313_SNP [dm3] X_7725280_SNP [dm6]	C	A	1.794e^-5	0.519	SYNONYMOUS_CODING Hira DOWNSTREAM NELF-B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2645600	3L_2645600_SNP [dm3] 3L_2645600_SNP [dm6]	A	T	1.825e^-5	0.519	INTRON CG1143	TF binding site mE1_TFBS_cad
3L	8207850	3L_8207850_SNP [dm3] 3L_8214750_SNP [dm6]	T	C	1.861e^-5	0.519	UPSTREAM CG8012 INTERGENIC
3R	17455708	3R_17455708_SNP [dm3] 3R_21629986_SNP [dm6]	G	T	1.932e^-5	0.519	INTRON E2f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	12112716	2R_12112716_SNP [dm3] 2R_16225211_SNP [dm6]	A	G	1.952e^-5	0.519	UTR_5_PRIME CG15706
3L	1108132	3L_1108132_SNP [dm3] 3L_1108132_SNP [dm6]	G	T	1.986e^-5	0.519	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9463855	2L_9463855_SNP [dm3] 2L_9463855_SNP [dm6]	C	T	2.001e^-5	0.519	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_kn
2L	4421150	2L_4421150_SNP [dm3] 2L_4421150_SNP [dm6]	G	T	2.076e^-5	0.519	INTRON CG15431
3L	20187404	3L_20187404_SNP [dm3] 3L_20194304_SNP [dm6]	A	G	2.111e^-5	0.519	INTRON CG42674
3L	743426	3L_743426_SNP [dm3] 3L_743426_SNP [dm6]	C	T	2.155e^-5	0.519	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	3997257	2L_3997257_INS [dm3] 2L_3997257_INS [dm6]	T	TGA	2.158e^-5	0.519	INTERGENIC
X	17952250	X_17952250_SNP [dm3] X_18058217_SNP [dm6]	G	A	2.179e^-5	0.519	INTRON Sh
3L	711790	3L_711790_SNP [dm3] 3L_711790_SNP [dm6]	A	T	2.189e^-5	0.519	UTR_5_PRIME CG13896	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	16619019	2L_16619019_SNP [dm3] 2L_16619019_SNP [dm6]	T	A	2.212e^-5	0.519	INTRON CG42389	TF binding site BDTNP1_TFBS_dl
3L	4817350	3L_4817350_SNP [dm3] 3L_4817350_SNP [dm6]	G	A	2.214e^-5	0.519	SYNONYMOUS_CODING Dhc64C
3L	712374	3L_712374_SNP [dm3] 3L_712374_SNP [dm6]	G	C	2.228e^-5	0.519	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	12055410	3L_12055410_SNP [dm3] 3L_12062310_SNP [dm6]	C	T	2.235e^-5	0.519	INTRON rols	TF binding site BDTNP1_TFBS_da
2R	3079481	2R_3079481_SNP [dm3] 2R_7191976_SNP [dm6]	T	G	2.245e^-5	0.519	INTRON pk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7156753	3L_7156753_SNP [dm3] 3L_7163653_SNP [dm6]	G	A	2.251e^-5	0.519	INTRON Dscam2
3L	7156769	3L_7156769_SNP [dm3] 3L_7163669_SNP [dm6]	G	A	2.251e^-5	0.519	INTRON Dscam2
X	7619308	X_7619308_SNP [dm3] X_7725275_SNP [dm6]	A	G	2.277e^-5	0.519	NON_SYNONYMOUS_CODING Hira DOWNSTREAM NELF-B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20262270	X_20262270_INS [dm3] X_20391243_INS [dm6]	A	ATCAATAATAATTCAA...	2.383e^-5	0.519	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15483234	3L_15483234_SNP [dm3] 3L_15490134_SNP [dm6]	A	C	2.386e^-5	0.519	INTERGENIC
X	7064106	X_7064106_SNP [dm3] X_7170073_SNP [dm6]	A	T	2.390e^-5	0.519	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2R	3599792	2R_3599792_SNP [dm3] 2R_7712287_SNP [dm6]	A	G	2.390e^-5	0.519	UPSTREAM CG1942 DOWNSTREAM mir-4909 & 1 other INTERGENIC
2R	13506075	2R_13506075_SNP [dm3] 2R_17618570_SNP [dm6]	T	G	2.422e^-5	0.519	UPSTREAM CG44403 INTRON CG10936
2L	8602199	2L_8602199_SNP [dm3] 2L_8602199_SNP [dm6]	A	C	2.424e^-5	0.519	INTRON Sema-1a
3L	712501	3L_712501_SNP [dm3] 3L_712501_SNP [dm6]	C	G	2.480e^-5	0.519	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	17952248	X_17952248_SNP [dm3] X_18058215_SNP [dm6]	C	A	2.545e^-5	0.519	INTRON Sh
2L	21921535	2L_21921535_SNP [dm3] 2L_21921535_SNP [dm6]	T	C	2.589e^-5	0.519	INTERGENIC
X	19421607	X_19421607_DEL [dm3] X_19527574_DEL [dm6]	CAC	C	2.605e^-5	0.519	UPSTREAM CoRest INTRON CoRest	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13600041	3R_13600041_SNP [dm3] 3R_17774319_SNP [dm6]	C	T	2.668e^-5	0.519	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
2L	10785598	2L_10785598_SNP [dm3] 2L_10785598_SNP [dm6]	A	T	2.690e^-5	0.519	INTRON CG31869 EXON CR44582
3L	16216199	3L_16216199_SNP [dm3] 3L_16223099_SNP [dm6]	C	T	2.691e^-5	0.519	DOWNSTREAM tRNA:CR32153 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2R	4956302	2R_4956302_SNP [dm3] 2R_9068797_SNP [dm6]	C	T	2.699e^-5	0.519	UPSTREAM ana INTRON ana
3L	14929590	3L_14929590_SNP [dm3] 3L_14936490_SNP [dm6]	G	C	2.735e^-5	0.519	INTRON DCX-EMAP
3L	9201306	3L_9201306_SNP [dm3] 3L_9208206_SNP [dm6]	C	T	2.762e^-5	0.519	UTR_5_PRIME Slc45-1 UPSTREAM Slc45-1
3L	15483232	3L_15483232_SNP [dm3] 3L_15490132_SNP [dm6]	A	T	2.764e^-5	0.519	INTERGENIC
3L	13272867	3L_13272867_SNP [dm3] 3L_13279767_SNP [dm6]	A	G	2.787e^-5	0.519	UPSTREAM tRNA:CR32123:Psi DOWNSTREAM caps INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	1100043	3L_1100043_SNP [dm3] 3L_1100043_SNP [dm6]	C	G	2.828e^-5	0.519	SYNONYMOUS_CODING bab1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	17948777	X_17948777_SNP [dm3] X_18054744_SNP [dm6]	G	A	2.889e^-5	0.519	INTRON Sh
X	10443026	X_10443026_SNP [dm3] X_10548993_SNP [dm6]	C	T	2.914e^-5	0.519	INTRON spri
X	11409403	X_11409403_SNP [dm3] X_11515370_SNP [dm6]	A	T	2.930e^-5	0.519	INTRON Drak	TF binding site mE1_TFBS_Kr
2L	2669602	2L_2669602_SNP [dm3] 2L_2669602_SNP [dm6]	G	T	2.941e^-5	0.519	UPSTREAM Gr23a INTERGENIC
2L	22297776	2L_22297776_SNP [dm3] 2L_22297776_SNP [dm6]	G	A	2.997e^-5	0.519	INTERGENIC	transposable element FlyBase
X	14842540	X_14842540_SNP [dm3] X_14948507_SNP [dm6]	T	C	3.012e^-5	0.519	INTRON pdgy	TF binding site mE1_TFBS_HSA
3L	14489439	3L_14489439_SNP [dm3] 3L_14496339_SNP [dm6]	A	G	3.067e^-5	0.519	INTRON bbg	TF binding site mE1_TFBS_cad
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	3.081e^-5	0.519	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3680402	3L_3680402_SNP [dm3] 3L_3680402_SNP [dm6]	T	C	3.100e^-5	0.519	INTERGENIC
2L	17333597	2L_17333597_SNP [dm3] 2L_17333597_SNP [dm6]	A	G	3.114e^-5	0.519	INTERGENIC
2R	3077646	2R_3077646_SNP [dm3] 2R_7190141_SNP [dm6]	T	G	3.124e^-5	0.519	INTRON pk
2L	15090507	2L_15090507_SNP [dm3] 2L_15090507_SNP [dm6]	T	C	3.141e^-5	0.519	INTRON CG15270
2R	11724908	2R_11724908_SNP [dm3] 2R_15837403_SNP [dm6]	C	T	3.141e^-5	0.519	INTRON tun	regulatory region REDfly_CRMs
3L	7777439	3L_7777439_SNP [dm3] 3L_7784339_SNP [dm6]	C	T	3.216e^-5	0.519	INTRON CG32369
3L	2645081	3L_2645081_SNP [dm3] 3L_2645081_SNP [dm6]	A	G	3.233e^-5	0.519	UPSTREAM CG1143 INTERGENIC
3L	9685669	3L_9685669_SNP [dm3] 3L_9692569_SNP [dm6]	A	G	3.257e^-5	0.519	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	2683655	3L_2683655_SNP [dm3] 3L_2683655_SNP [dm6]	A	G	3.259e^-5	0.519	INTRON Fife
3L	5888622	3L_5888622_SNP [dm3] 3L_5895522_SNP [dm6]	G	T	3.268e^-5	0.519	DOWNSTREAM Pole2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3077080	2R_3077080_INS [dm3] 2R_7189575_INS [dm6]	G	GGCAG	3.318e^-5	0.523	INTRON pk
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	3.352e^-5	0.524	INTRON dnc
3R	4934321	3R_4934321_SNP [dm3] 3R_9108599_SNP [dm6]	G	A	3.451e^-5	0.535	INTRON pum
3L	837693	3L_837693_SNP [dm3] 3L_837693_SNP [dm6]	A	C	3.491e^-5	0.537	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
X	18265153	X_18265153_SNP [dm3] X_18371120_SNP [dm6]	G	T	3.556e^-5	0.542	UTR_5_PRIME CrebB UPSTREAM CrebB INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	17952247	X_17952247_SNP [dm3] X_18058214_SNP [dm6]	A	C	3.591e^-5	0.543	INTRON Sh
2R	8479078	2R_8479078_SNP [dm3] 2R_12591573_SNP [dm6]	G	T	3.719e^-5	0.554	DOWNSTREAM CR30055 INTRON Sin3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
X	4094020	X_4094020_SNP [dm3] X_4199987_SNP [dm6]	T	C	3.757e^-5	0.554	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10998493	2R_10998493_SNP [dm3] 2R_15110988_SNP [dm6]	A	G	3.796e^-5	0.554	INTERGENIC
X	15264242	X_15264242_SNP [dm3] X_15370209_SNP [dm6]	T	C	3.861e^-5	0.554	INTRON acj6
2L	17333728	2L_17333728_SNP [dm3] 2L_17333728_SNP [dm6]	G	T	3.868e^-5	0.554	INTERGENIC
3R	22618992	3R_22618992_SNP [dm3] 3R_26793270_SNP [dm6]	A	G	3.885e^-5	0.554	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24353994	3R_24353994_SNP [dm3] 3R_28528272_SNP [dm6]	G	A	3.974e^-5	0.554	NON_SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2660003	2L_2660003_SNP [dm3] 2L_2660003_SNP [dm6]	T	A	3.977e^-5	0.554	INTERGENIC
2R	10998491	2R_10998491_SNP [dm3] 2R_15110986_SNP [dm6]	A	G	4.021e^-5	0.554	INTERGENIC
3L	18202542	3L_18202542_SNP [dm3] 3L_18209442_SNP [dm6]	A	T	4.032e^-5	0.554	INTERGENIC
3L	712343	3L_712343_SNP [dm3] 3L_712343_SNP [dm6]	A	C	4.048e^-5	0.554	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	1675714	2L_1675714_SNP [dm3] 2L_1675714_SNP [dm6]	T	A	4.107e^-5	0.554	INTRON chinmo
2L	1675720	2L_1675720_SNP [dm3] 2L_1675720_SNP [dm6]	C	G	4.107e^-5	0.554	INTRON chinmo
3R	22778961	3R_22778961_SNP [dm3] 3R_26953239_SNP [dm6]	G	A	4.128e^-5	0.554	UTR_5_PRIME CG6330 INTRON CG6330	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	7619193	X_7619193_SNP [dm3] X_7725160_SNP [dm6]	C	T	4.154e^-5	0.554	SYNONYMOUS_CODING Hira DOWNSTREAM NELF-B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4093930	X_4093930_SNP [dm3] X_4199897_SNP [dm6]	T	C	4.187e^-5	0.554	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	16202346	3L_16202346_SNP [dm3] 3L_16209246_SNP [dm6]	C	T	4.211e^-5	0.554	INTERGENIC	TF binding site mE1_TFBS_cad
3L	711857	3L_711857_SNP [dm3] 3L_711857_SNP [dm6]	A	C	4.297e^-5	0.554	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	8479010	2R_8479010_SNP [dm3] 2R_12591505_SNP [dm6]	T	C	4.346e^-5	0.554	DOWNSTREAM CR30055 INTRON Sin3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
X	18463732	X_18463732_SNP [dm3] X_18569699_SNP [dm6]	A	G	4.351e^-5	0.554	INTRON Bx	TF binding site BDTNP1_TFBS_da
3L	14389469	3L_14389469_SNP [dm3] 3L_14396369_SNP [dm6]	C	G	4.402e^-5	0.554	INTERGENIC
3L	1103387	3L_1103387_SNP [dm3] 3L_1103387_SNP [dm6]	C	T	4.446e^-5	0.554	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	10998501	2R_10998501_SNP [dm3] 2R_15110996_SNP [dm6]	T	G	4.575e^-5	0.554	INTERGENIC
2L	16957224	2L_16957224_SNP [dm3] 2L_16957224_SNP [dm6]	A	G	4.620e^-5	0.554	INTERGENIC
X	6258888	X_6258888_SNP [dm3] X_6364855_SNP [dm6]	A	C	4.636e^-5	0.554	SYNONYMOUS_CODING swa	TF binding site mE1_TFBS_chinmo
2R	3078696	2R_3078696_SNP [dm3] 2R_7191191_SNP [dm6]	C	T	4.672e^-5	0.554	INTRON pk	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3L	11525805	3L_11525805_SNP [dm3] 3L_11532705_SNP [dm6]	G	A	4.689e^-5	0.554	INTRON Mob2
X	17952258	X_17952258_SNP [dm3] X_18058225_SNP [dm6]	C	A	4.696e^-5	0.554	INTRON Sh
2R	8479079	2R_8479079_SNP [dm3] 2R_12591574_SNP [dm6]	G	T	4.764e^-5	0.554	DOWNSTREAM CR30055 INTRON Sin3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
X	7622623	X_7622623_SNP [dm3] X_7728590_SNP [dm6]	G	A	4.781e^-5	0.554	UPSTREAM CG12155 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9506599	2L_9506599_SNP [dm3] 2L_9506599_SNP [dm6]	T	A	4.800e^-5	0.554	INTRON CG33298
3L	13554079	3L_13554079_SNP [dm3] 3L_13560979_SNP [dm6]	G	A	4.812e^-5	0.554	INTRON bru-3
2R	8137710	2R_8137710_SNP [dm3] 2R_12250205_SNP [dm6]	C	A	4.825e^-5	0.554	INTERGENIC
2L	8447278	2L_8447278_SNP [dm3] 2L_8447278_SNP [dm6]	T	G	4.890e^-5	0.554	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	11791042	3L_11791042_SNP [dm3] 3L_11797942_SNP [dm6]	A	G	4.897e^-5	0.554	SYNONYMOUS_CODING Klp68D	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8518986	3L_8518986_SNP [dm3] 3L_8525886_SNP [dm6]	A	C	4.899e^-5	0.554	INTRON foi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	4737896	3L_4737896_SNP [dm3] 3L_4737896_SNP [dm6]	G	A	4.988e^-5	0.554	INTRON RhoGEF64C
3R	6253276	3R_6253276_SNP [dm3] 3R_10427554_SNP [dm6]	G	A	4.991e^-5	0.554	INTERGENIC
2R	4953988	2R_4953988_SNP [dm3] 2R_9066483_SNP [dm6]	T	C	4.994e^-5	0.554	INTRON ana	regulatory region REDfly_CRMs
2R	19404101	2R_19404101_SNP [dm3] 2R_23516578_SNP [dm6]	C	G	5.024e^-5	0.554	INTERGENIC
3R	5121977	3R_5121977_SNP [dm3] 3R_9296255_SNP [dm6]	A	T	5.043e^-5	0.554	INTRON CG8861
3L	1108128	3L_1108128_SNP [dm3] 3L_1108128_SNP [dm6]	G	T	5.049e^-5	0.554	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	18262665	X_18262665_SNP [dm3] X_18368632_SNP [dm6]	T	G	5.066e^-5	0.554	INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	2311636	X_2311636_SNP [dm3] X_2417603_SNP [dm6]	A	T	5.107e^-5	0.554	INTERGENIC	TF binding site mE1_TFBS_sens
X	17952259	X_17952259_SNP [dm3] X_18058226_SNP [dm6]	T	C	5.159e^-5	0.554	INTRON Sh
X	17952263	X_17952263_SNP [dm3] X_18058230_SNP [dm6]	A	G	5.192e^-5	0.554	INTRON Sh
2R	11340150	2R_11340150_SNP [dm3] 2R_15452645_SNP [dm6]	A	T	5.198e^-5	0.554	INTRON CG43729
2L	21795611	2L_21795611_SNP [dm3] 2L_21795611_SNP [dm6]	C	G	5.222e^-5	0.554	UPSTREAM CG31612 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
3L	8391972	3L_8391972_SNP [dm3] 3L_8398872_SNP [dm6]	A	T	5.248e^-5	0.554	INTRON CG7120
3L	9685627	3L_9685627_SNP [dm3] 3L_9692527_SNP [dm6]	A	G	5.282e^-5	0.554	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	9685634	3L_9685634_SNP [dm3] 3L_9692534_SNP [dm6]	C	T	5.282e^-5	0.554	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	9686029	3L_9686029_SNP [dm3] 3L_9692929_SNP [dm6]	A	T	5.282e^-5	0.554	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
3L	9686121	3L_9686121_SNP [dm3] 3L_9693021_SNP [dm6]	T	A	5.282e^-5	0.554	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
3R	10272628	3R_10272628_SNP [dm3] 3R_14446906_SNP [dm6]	C	T	5.322e^-5	0.554	INTRON cv-c
3L	15483252	3L_15483252_SNP [dm3] 3L_15490152_SNP [dm6]	G	T	5.323e^-5	0.554	INTERGENIC
3L	7471573	3L_7471573_SNP [dm3] 3L_7478473_SNP [dm6]	A	G	5.344e^-5	0.554	INTERGENIC
2R	8137678	2R_8137678_SNP [dm3] 2R_12250173_SNP [dm6]	T	C	5.363e^-5	0.554	INTERGENIC
3R	4342921	3R_4342921_SNP [dm3] 3R_8517199_SNP [dm6]	C	T	5.409e^-5	0.554	UPSTREAM CG11737 INTERGENIC
X	7622443	X_7622443_SNP [dm3] X_7728410_SNP [dm6]	G	A	5.444e^-5	0.554	UPSTREAM CG12155 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	22141451	3R_22141451_SNP [dm3] 3R_26315729_SNP [dm6]	C	T	5.465e^-5	0.554	INTERGENIC
3R	18758721	3R_18758721_SNP [dm3] 3R_22932999_SNP [dm6]	G	A	5.465e^-5	0.554	INTRON klg
2R	11683570	2R_11683570_SNP [dm3] 2R_15796065_SNP [dm6]	T	G	5.557e^-5	0.56	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1103352	3L_1103352_INS [dm3] 3L_1103352_INS [dm6]	T	TGTAT	5.612e^-5	0.563	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	376777	2L_376777_SNP [dm3] 2L_376777_SNP [dm6]	G	A	5.716e^-5	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	9686313	3L_9686313_SNP [dm3] 3L_9693213_SNP [dm6]	C	A	5.726e^-5	0.565	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
X	20262315	X_20262315_DEL [dm3] X_20391288_DEL [dm6]	TGATGTTTCTTAT...	T	5.777e^-5	0.565	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19024849	2R_19024849_SNP [dm3] 2R_23137326_SNP [dm6]	T	G	5.786e^-5	0.565	INTERGENIC
2L	16619032	2L_16619032_SNP [dm3] 2L_16619032_SNP [dm6]	A	C	5.803e^-5	0.565	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	17028512	2R_17028512_SNP [dm3] 2R_21141007_SNP [dm6]	A	C	5.812e^-5	0.565	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	8137696	2R_8137696_SNP [dm3] 2R_12250191_SNP [dm6]	A	T	5.944e^-5	0.574	INTERGENIC
X	5661124	X_5661124_SNP [dm3] X_5767091_SNP [dm6]	G	A	5.974e^-5	0.574	SYNONYMOUS_CODING CG3097 INTRON CG42699	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4737895	3L_4737895_SNP [dm3] 3L_4737895_SNP [dm6]	A	G	6.151e^-5	0.588	INTRON RhoGEF64C
3L	15483205	3L_15483205_SNP [dm3] 3L_15490105_SNP [dm6]	G	A	6.178e^-5	0.588	INTERGENIC
2R	14271036	2R_14271036_SNP [dm3] 2R_18383531_SNP [dm6]	A	T	6.285e^-5	0.595	UPSTREAM IM1 & 1 other INTERGENIC
3L	14919557	3L_14919557_SNP [dm3] 3L_14926457_SNP [dm6]	T	G	6.341e^-5	0.597	UTR_5_PRIME DCX-EMAP INTRON DCX-EMAP	TF binding site mE1_TFBS_cad
3R	10272634	3R_10272634_SNP [dm3] 3R_14446912_SNP [dm6]	T	C	6.366e^-5	0.597	INTRON cv-c
2R	14271043	2R_14271043_DEL [dm3] 2R_18383538_DEL [dm6]	TAATGTCTTC	T	6.509e^-5	0.603	UPSTREAM IM1 & 1 other INTERGENIC
3L	19449444	3L_19449444_SNP [dm3] 3L_19456344_SNP [dm6]	C	G	6.516e^-5	0.603	DOWNSTREAM CR45434 INTERGENIC
2L	8450856	2L_8450856_SNP [dm3] 2L_8450856_SNP [dm6]	A	C	6.534e^-5	0.603	SYNONYMOUS_CODING fu12
2L	9446671	2L_9446671_SNP [dm3] 2L_9446671_SNP [dm6]	A	C	6.600e^-5	0.606	INTRON numb	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2R	8908601	2R_8908601_SNP [dm3] 2R_13021096_SNP [dm6]	T	A	6.776e^-5	0.609	INTERGENIC	TF binding site mE1_TFBS_cad
3L	16216184	3L_16216184_SNP [dm3] 3L_16223084_SNP [dm6]	C	A	6.808e^-5	0.609	DOWNSTREAM tRNA:CR32153 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3L	15488893	3L_15488893_DEL [dm3] 3L_15495793_DEL [dm6]	TCT	T	6.834e^-5	0.609	UPSTREAM CG12355 & 1 other INTERGENIC
3R	22784279	3R_22784279_SNP [dm3] 3R_26958557_SNP [dm6]	C	T	6.843e^-5	0.609	UPSTREAM CG6330 INTERGENIC
X	11320928	X_11320928_MNP [dm3] X_11426895_MNP [dm6]	GCGG	TTTT	6.852e^-5	0.609	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11320932	X_11320932_INS [dm3] X_11426899_INS [dm6]	A	AAT	6.852e^-5	0.609	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16202334	3L_16202334_SNP [dm3] 3L_16209234_SNP [dm6]	A	T	6.867e^-5	0.609	INTERGENIC	TF binding site mE1_TFBS_cad
2R	12116819	2R_12116819_SNP [dm3] 2R_16229314_SNP [dm6]	A	G	6.919e^-5	0.609	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	21160844	X_21160844_SNP [dm3] X_21289817_SNP [dm6]	G	C	6.994e^-5	0.609	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11168307	3L_11168307_SNP [dm3] 3L_11175207_SNP [dm6]	T	A	7.028e^-5	0.609	INTRON CG14142
3R	12971257	3R_12971257_SNP [dm3] 3R_17145535_SNP [dm6]	A	C	7.056e^-5	0.609	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3R	12971260	3R_12971260_DEL [dm3] 3R_17145538_DEL [dm6]	AGGTAAGCATCCTA...	G	7.056e^-5	0.609	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3L	7467554	3L_7467554_SNP [dm3] 3L_7474454_SNP [dm6]	G	A	7.166e^-5	0.609	INTERGENIC
2L	9506598	2L_9506598_SNP [dm3] 2L_9506598_SNP [dm6]	C	A	7.171e^-5	0.609	INTRON CG33298
3L	14919578	3L_14919578_SNP [dm3] 3L_14926478_SNP [dm6]	A	G	7.210e^-5	0.609	UTR_5_PRIME DCX-EMAP INTRON DCX-EMAP
3R	22141543	3R_22141543_SNP [dm3] 3R_26315821_SNP [dm6]	T	A	7.260e^-5	0.609	INTERGENIC
2L	17327630	2L_17327630_SNP [dm3] 2L_17327630_SNP [dm6]	C	G	7.261e^-5	0.609	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16202254	3L_16202254_SNP [dm3] 3L_16209154_SNP [dm6]	C	T	7.333e^-5	0.609	INTERGENIC	TF binding site mE1_TFBS_cad
3R	24132403	3R_24132403_SNP [dm3] 3R_28306681_SNP [dm6]	A	C	7.378e^-5	0.609	INTERGENIC	TF binding site mE1_TFBS_HSA
X	7617819	X_7617819_SNP [dm3] X_7723786_SNP [dm6]	C	A	7.397e^-5	0.609	SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_HSA
2R	3079950	2R_3079950_SNP [dm3] 2R_7192445_SNP [dm6]	T	G	7.462e^-5	0.609	INTRON pk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	3178769	2R_3178769_SNP [dm3] 2R_7291264_SNP [dm6]	G	A	7.588e^-5	0.609	INTRON pwn	TF binding site mE1_TFBS_cad
3L	7726328	3L_7726328_SNP [dm3] 3L_7733228_SNP [dm6]	T	C	7.588e^-5	0.609	DOWNSTREAM Snmp2 INTRON CG32373
2R	5395530	2R_5395530_SNP [dm3] 2R_9508025_SNP [dm6]	A	C	7.606e^-5	0.609	UTR_5_PRIME brp INTRON brp	TF binding site mE1_TFBS_Trl
3L	1103303	3L_1103303_INS [dm3] 3L_1103303_INS [dm6]	A	AACCGAT	7.622e^-5	0.609	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	17456726	3L_17456726_SNP [dm3] 3L_17463626_SNP [dm6]	A	G	7.624e^-5	0.609	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	7615605	X_7615605_SNP [dm3] X_7721572_SNP [dm6]	T	C	7.625e^-5	0.609	UPSTREAM Hira INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10998512	2R_10998512_SNP [dm3] 2R_15111007_SNP [dm6]	G	T	7.686e^-5	0.609	INTERGENIC
3R	2867864	3R_2867864_SNP [dm3] 3R_7042142_SNP [dm6]	A	C	7.722e^-5	0.609	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3136990	X_3136990_SNP [dm3] X_3242957_SNP [dm6]	A	G	7.752e^-5	0.609	UPSTREAM ng3 DOWNSTREAM ng1 & 1 other INTRON dnc
2R	3078631	2R_3078631_DEL [dm3] 2R_7191126_DEL [dm6]	TACT	T	7.773e^-5	0.609	INTRON pk	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
X	7617605	X_7617605_SNP [dm3] X_7723572_SNP [dm6]	A	T	7.846e^-5	0.609	NON_SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	14271079	2R_14271079_MNP [dm3] 2R_18383574_MNP [dm6]	ACA	CAG	7.924e^-5	0.609	UPSTREAM IM1 & 2 others INTERGENIC
3L	1570824	3L_1570824_SNP [dm3] 3L_1570824_SNP [dm6]	T	C	7.950e^-5	0.609	INTRON CG12004	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	18264596	X_18264596_SNP [dm3] X_18370563_SNP [dm6]	A	G	7.957e^-5	0.609	UPSTREAM CrebB & 1 other INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Trl
X	11320954	X_11320954_SNP [dm3] X_11426921_SNP [dm6]	A	T	7.976e^-5	0.609	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1101004	3L_1101004_SNP [dm3] 3L_1101004_SNP [dm6]	C	T	8.027e^-5	0.609	UTR_5_PRIME bab1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
X	9721384	X_9721384_DEL [dm3] X_9827351_DEL [dm6]	AA	A	8.041e^-5	0.609	INTRON CG32698
3L	9661317	3L_9661317_SNP [dm3] 3L_9668217_SNP [dm6]	A	G	8.049e^-5	0.609	INTRON fry	TF binding site mE1_TFBS_cad
2R	18475352	2R_18475352_SNP [dm3] 2R_22587847_SNP [dm6]	G	C	8.066e^-5	0.609	INTRON dnr1
3L	16202321	3L_16202321_SNP [dm3] 3L_16209221_SNP [dm6]	G	T	8.092e^-5	0.609	INTERGENIC	TF binding site mE1_TFBS_cad
3R	11666483	3R_11666483_SNP [dm3] 3R_15840761_SNP [dm6]	G	C	8.162e^-5	0.609	SYNONYMOUS_CODING spn-E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	15639667	3L_15639667_SNP [dm3] 3L_15646567_SNP [dm6]	C	G	8.182e^-5	0.609	INTRON comm3
3R	14344614	3R_14344614_SNP [dm3] 3R_18518892_SNP [dm6]	T	A	8.184e^-5	0.609	INTRON fru
3R	10196368	3R_10196368_SNP [dm3] 3R_14370646_SNP [dm6]	T	A	8.214e^-5	0.609	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	22020494	2L_22020494_SNP [dm3] 2L_22020494_SNP [dm6]	A	G	8.222e^-5	0.609	DOWNSTREAM CR33987 INTRON tio	TF binding site mE1_TFBS_Trl
3L	14925605	3L_14925605_SNP [dm3] 3L_14932505_SNP [dm6]	T	G	8.340e^-5	0.609	INTRON DCX-EMAP
3L	12532444	3L_12532444_SNP [dm3] 3L_12539344_SNP [dm6]	C	T	8.369e^-5	0.609	DOWNSTREAM sowah INTRON sowah
X	7620280	X_7620280_SNP [dm3] X_7726247_SNP [dm6]	G	T	8.376e^-5	0.609	UTR_3_PRIME NELF-B DOWNSTREAM Hira	TF binding site mE1_TFBS_chinmo
3R	13600203	3R_13600203_SNP [dm3] 3R_17774481_SNP [dm6]	C	T	8.399e^-5	0.609	UTR_5_PRIME CG43102 INTRON CG43102
3R	13600449	3R_13600449_SNP [dm3] 3R_17774727_SNP [dm6]	C	T	8.399e^-5	0.609	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl
3L	1103308	3L_1103308_SNP [dm3] 3L_1103308_SNP [dm6]	A	T	8.411e^-5	0.609	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	7993136	X_7993136_SNP [dm3] X_8099103_SNP [dm6]	C	A	8.457e^-5	0.609	INTRON CG2258	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17946678	X_17946678_SNP [dm3] X_18052645_SNP [dm6]	G	T	8.514e^-5	0.609	INTRON Sh	TF binding site BDTNP1_TFBS_dl
2L	14460423	2L_14460423_SNP [dm3] 2L_14460423_SNP [dm6]	T	A	8.560e^-5	0.609	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5886015	3L_5886015_SNP [dm3] 3L_5892915_SNP [dm6]	C	G	8.643e^-5	0.609	INTERGENIC
3L	2645611	3L_2645611_SNP [dm3] 3L_2645611_SNP [dm6]	C	A	8.646e^-5	0.609	INTRON CG1143	TF binding site mE1_TFBS_cad
3R	20231859	3R_20231859_SNP [dm3] 3R_24406137_SNP [dm6]	A	C	8.664e^-5	0.609	INTRON nAChRalpha1
2L	9487588	2L_9487588_SNP [dm3] 2L_9487588_SNP [dm6]	A	G	8.665e^-5	0.609	INTERGENIC
2L	17302534	2L_17302534_SNP [dm3] 2L_17302534_SNP [dm6]	A	G	8.672e^-5	0.609	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15483280	3L_15483280_SNP [dm3] 3L_15490180_SNP [dm6]	T	C	8.673e^-5	0.609	INTERGENIC
2L	21802210	2L_21802210_SNP [dm3] 2L_21802210_SNP [dm6]	G	A	8.715e^-5	0.609	INTERGENIC
2R	18475324	2R_18475324_DEL [dm3] 2R_22587819_DEL [dm6]	GA	G	8.724e^-5	0.609	INTRON dnr1
X	17952266	X_17952266_SNP [dm3] X_18058233_SNP [dm6]	G	T	8.749e^-5	0.609	INTRON Sh
3L	7129119	3L_7129119_SNP [dm3] 3L_7136019_SNP [dm6]	T	G	8.824e^-5	0.609	INTRON melt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24829701	3R_24829701_SNP [dm3] 3R_29003979_SNP [dm6]	C	G	8.842e^-5	0.609	INTRON wat
2L	8697403	2L_8697403_SNP [dm3] 2L_8697403_SNP [dm6]	T	G	8.889e^-5	0.609	INTRON Hnf4
3L	9319410	3L_9319410_SNP [dm3] 3L_9326310_SNP [dm6]	T	A	8.890e^-5	0.609	INTERGENIC
2L	5758264	2L_5758264_SNP [dm3] 2L_5758264_SNP [dm6]	A	C	8.899e^-5	0.609	INTRON CG11030	TF binding site mE1_TFBS_cad
3L	10025688	3L_10025688_SNP [dm3] 3L_10032588_SNP [dm6]	A	T	8.933e^-5	0.609	INTRON dpr6
3R	21341350	3R_21341350_SNP [dm3] 3R_25515628_SNP [dm6]	G	T	8.942e^-5	0.609	UPSTREAM msi INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10025690	3L_10025690_DEL [dm3] 3L_10032590_DEL [dm6]	TCAAACGTGATATGAAATAT...	A	9.048e^-5	0.609	INTRON dpr6
2L	606452	2L_606452_SNP [dm3] 2L_606452_SNP [dm6]	C	T	9.052e^-5	0.609	DOWNSTREAM CR43648 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9443469	2L_9443469_SNP [dm3] 2L_9443469_SNP [dm6]	C	T	9.056e^-5	0.609	INTRON numb
3R	25588806	3R_25588806_SNP [dm3] 3R_29763084_SNP [dm6]	A	G	9.067e^-5	0.609	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7754985	2R_7754985_SNP [dm3] 2R_11867480_SNP [dm6]	G	A	9.142e^-5	0.612	DOWNSTREAM CG13185 EXON CR42532
3L	16896018	3L_16896018_SNP [dm3] 3L_16902918_SNP [dm6]	G	A	9.185e^-5	0.613	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo
2L	9463889	2L_9463889_DEL [dm3] 2L_9463889_DEL [dm6]	CA	G	9.251e^-5	0.613	UTR_3_PRIME numb DOWNSTREAM numb
2L	17302565	2L_17302565_SNP [dm3] 2L_17302565_SNP [dm6]	C	A	9.252e^-5	0.613	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11508729	3L_11508729_DEL [dm3] 3L_11515629_DEL [dm6]	CCC	C	9.320e^-5	0.615	INTRON CG7512
X	5646808	X_5646808_SNP [dm3] X_5752775_SNP [dm6]	C	G	9.371e^-5	0.615	DOWNSTREAM CG4078 & 1 other INTRON CG15772	TF binding site mE1_TFBS_cad
3L	742989	3L_742989_SNP [dm3] 3L_742989_SNP [dm6]	C	A	9.375e^-5	0.615	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	10969436	3L_10969436_SNP [dm3] 3L_10976336_SNP [dm6]	A	T	9.454e^-5	0.615	INTERGENIC	TF binding site mE1_TFBS_cad
X	21081580	X_21081580_SNP [dm3] X_21210553_SNP [dm6]	A	G	9.485e^-5	0.615	INTRON CG32521
X	22332606	X_22332606_SNP [dm3] X_22930770_SNP [dm6]	C	G	9.543e^-5	0.615	INTERGENIC
3L	8391974	3L_8391974_SNP [dm3] 3L_8398874_SNP [dm6]	G	A	9.600e^-5	0.615	INTRON CG7120
2L	16840396	2L_16840396_SNP [dm3] 2L_16840396_SNP [dm6]	T	C	9.623e^-5	0.615	UTR_3_PRIME SclA & 1 other INTRON SclA
2R	16864005	2R_16864005_SNP [dm3] 2R_20976500_SNP [dm6]	A	T	9.642e^-5	0.615	UPSTREAM CG9344 INTRON CG34115	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	5538195	X_5538195_SNP [dm3] X_5644162_SNP [dm6]	A	G	9.678e^-5	0.615	INTRON CG42492
2R	12267152	2R_12267152_SNP [dm3] 2R_16379647_SNP [dm6]	T	A	9.693e^-5	0.615	UPSTREAM CG43187 EXON CR45316 & 1 other
2R	16289319	2R_16289319_SNP [dm3] 2R_20401814_SNP [dm6]	C	T	9.742e^-5	0.615	INTERGENIC
3L	1103402	3L_1103402_SNP [dm3] 3L_1103402_SNP [dm6]	A	T	9.745e^-5	0.615	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	21160839	X_21160839_SNP [dm3] X_21289812_SNP [dm6]	T	C	9.766e^-5	0.615	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	4950454	2R_4950454_SNP [dm3] 2R_9062949_SNP [dm6]	G	A	9.777e^-5	0.615	INTRON ana	regulatory region REDfly_CRMs
3L	8929326	3L_8929326_SNP [dm3] 3L_8936226_SNP [dm6]	C	T	9.837e^-5	0.617	NON_SYNONYMOUS_CODING CG43783 DOWNSTREAM orb2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19337409	2R_19337409_SNP [dm3] 2R_23449886_SNP [dm6]	G	A	9.955e^-5	0.618	INTRON CG43795
2R	19522673	2R_19522673_SNP [dm3] 2R_23635150_SNP [dm6]	G	T	9.973e^-5	0.618	INTRON retn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	14815465	3L_14815465_SNP [dm3] 3L_14822365_SNP [dm6]	G	A	9.989e^-5	0.618	INTRON CG17839
3L	2645067	3L_2645067_SNP [dm3] 3L_2645067_SNP [dm6]	C	T	1.001e^-4	0.618	UPSTREAM CG1143 INTERGENIC
X	2310890	X_2310890_SNP [dm3] X_2416857_SNP [dm6]	C	G	1.003e^-4	0.618	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11804667	2R_11804667_SNP [dm3] 2R_15917162_SNP [dm6]	T	G	1.011e^-4	0.619	DOWNSTREAM CR44373 INTRON sli	TF binding site mE1_TFBS_cad
3R	13682475	3R_13682475_SNP [dm3] 3R_17856753_SNP [dm6]	G	A	1.016e^-4	0.619	INTRON tinc
2L	18908808	2L_18908808_SNP [dm3] 2L_18908808_SNP [dm6]	G	T	1.017e^-4	0.619	INTERGENIC
X	7612558	X_7612558_SNP [dm3] X_7718525_SNP [dm6]	A	G	1.018e^-4	0.619	UPSTREAM CG15478 INTERGENIC
2L	9446658	2L_9446658_SNP [dm3] 2L_9446658_SNP [dm6]	A	C	1.024e^-4	0.619	INTRON numb	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	9446659	2L_9446659_SNP [dm3] 2L_9446659_SNP [dm6]	A	C	1.024e^-4	0.619	INTRON numb	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
3R	22780339	3R_22780339_SNP [dm3] 3R_26954617_SNP [dm6]	T	C	1.029e^-4	0.619	INTRON CG6330	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4624701	2L_4624701_SNP [dm3] 2L_4624701_SNP [dm6]	C	T	1.030e^-4	0.619	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14271099	2R_14271099_SNP [dm3] 2R_18383594_SNP [dm6]	G	A	1.039e^-4	0.622	UPSTREAM IM1 & 2 others INTERGENIC
3R	14351051	3R_14351051_SNP [dm3] 3R_18525329_SNP [dm6]	G	A	1.046e^-4	0.624	INTRON fru	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	10213841	3R_10213841_SNP [dm3] 3R_14388119_SNP [dm6]	A	T	1.059e^-4	0.629	INTERGENIC
2L	8447795	2L_8447795_SNP [dm3] 2L_8447795_SNP [dm6]	C	T	1.067e^-4	0.629	SYNONYMOUS_CODING U26 UTR_3_PRIME U26
2R	14270956	2R_14270956_DEL [dm3] 2R_18383451_DEL [dm6]	ATTTTT	A	1.069e^-4	0.629	UPSTREAM IM1 & 1 other INTERGENIC
3L	15483209	3L_15483209_SNP [dm3] 3L_15490109_SNP [dm6]	A	G	1.072e^-4	0.629	INTERGENIC
3R	25894705	3R_25894705_SNP [dm3] 3R_30068983_SNP [dm6]	C	G	1.073e^-4	0.629	INTRON sima
2R	11683256	2R_11683256_SNP [dm3] 2R_15795751_SNP [dm6]	C	T	1.078e^-4	0.629	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	15903314	2R_15903314_SNP [dm3] 2R_20015809_SNP [dm6]	A	C	1.086e^-4	0.629	DOWNSTREAM CR44630 INTERGENIC
2L	18930447	2L_18930447_SNP [dm3] 2L_18930447_SNP [dm6]	G	A	1.086e^-4	0.629	INTRON ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19019176	X_19019176_SNP [dm3] X_19125143_SNP [dm6]	C	A	1.090e^-4	0.629	UTR_3_PRIME tgy UPSTREAM CG15882 DOWNSTREAM tgy
2R	15903310	2R_15903310_DEL [dm3] 2R_20015805_DEL [dm6]	TGA	T	1.096e^-4	0.629	DOWNSTREAM CR44630 INTERGENIC
3R	25323777	3R_25323777_SNP [dm3] 3R_29498055_SNP [dm6]	A	G	1.104e^-4	0.629	DOWNSTREAM Trc8 INTRON CG2010	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	13136787	X_13136787_SNP [dm3] X_13242754_SNP [dm6]	C	T	1.104e^-4	0.629	INTRON mew	TF binding site BDTNP1_TFBS_da
3L	14816333	3L_14816333_SNP [dm3] 3L_14823233_SNP [dm6]	G	A	1.116e^-4	0.629	INTRON CG17839
2L	17302476	2L_17302476_SNP [dm3] 2L_17302476_SNP [dm6]	A	C	1.118e^-4	0.629	INTERGENIC	TF binding site mE1_TFBS_sbb
3L	9491503	3L_9491503_SNP [dm3] 3L_9498403_SNP [dm6]	T	C	1.120e^-4	0.629	INTRON path
3L	412023	3L_412023_SNP [dm3] 3L_412023_SNP [dm6]	G	T	1.123e^-4	0.629	INTERGENIC
3L	10025750	3L_10025750_SNP [dm3] 3L_10032650_SNP [dm6]	G	A	1.126e^-4	0.629	INTRON dpr6
3R	16196724	3R_16196724_SNP [dm3] 3R_20371002_SNP [dm6]	C	G	1.127e^-4	0.629	INTERGENIC
3L	11168354	3L_11168354_SNP [dm3] 3L_11175254_SNP [dm6]	G	A	1.129e^-4	0.629	INTRON CG14142	TF binding site mE1_TFBS_cad
2L	21779550	2L_21779550_INS [dm3] 2L_21779550_INS [dm6]	C	CTATTCTTATTATC...	1.135e^-4	0.629	INTRON CG31612
3L	4289756	3L_4289756_SNP [dm3] 3L_4289756_SNP [dm6]	C	A	1.141e^-4	0.629	SYNONYMOUS_CODING Hexo1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8592217	3L_8592217_SNP [dm3] 3L_8599117_SNP [dm6]	G	C	1.141e^-4	0.629	UTR_3_PRIME CG43078 DOWNSTREAM Nelf-E
3L	11168356	3L_11168356_INS [dm3] 3L_11175256_INS [dm6]	G	TTATA	1.142e^-4	0.629	INTRON CG14142	TF binding site mE1_TFBS_cad
2R	10837352	2R_10837352_SNP [dm3] 2R_14949847_SNP [dm6]	A	G	1.148e^-4	0.629	UPSTREAM aPKC INTRON aPKC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	837739	3L_837739_INS [dm3] 3L_837739_INS [dm6]	T	TA	1.160e^-4	0.629	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	14811233	3L_14811233_SNP [dm3] 3L_14818133_SNP [dm6]	C	T	1.163e^-4	0.629	INTRON CG17839
3L	14816170	3L_14816170_SNP [dm3] 3L_14823070_SNP [dm6]	A	T	1.164e^-4	0.629	INTRON CG17839
2R	13739800	2R_13739800_SNP [dm3] 2R_17852295_SNP [dm6]	G	T	1.171e^-4	0.629	UPSTREAM CG30323 INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14954405	3L_14954405_SNP [dm3] 3L_14961305_SNP [dm6]	G	T	1.172e^-4	0.629	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4208104	X_4208104_SNP [dm3] X_4314071_SNP [dm6]	A	G	1.172e^-4	0.629	DOWNSTREAM mei-9 INTRON CR44957
2L	8448106	2L_8448106_SNP [dm3] 2L_8448106_SNP [dm6]	G	A	1.175e^-4	0.629	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8137699	2R_8137699_SNP [dm3] 2R_12250194_SNP [dm6]	T	C	1.176e^-4	0.629	INTERGENIC
2R	12510094	2R_12510094_SNP [dm3] 2R_16622589_SNP [dm6]	C	T	1.177e^-4	0.629	INTRON CG5065	TF binding site mE1_TFBS_cad
X	11320937	X_11320937_SNP [dm3] X_11426904_SNP [dm6]	G	C	1.178e^-4	0.629	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10435085	3R_10435085_SNP [dm3] 3R_14609363_SNP [dm6]	G	T	1.183e^-4	0.629	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	12389779	2R_12389779_SNP [dm3] 2R_16502274_SNP [dm6]	A	G	1.185e^-4	0.629	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	5963561	3R_5963561_SNP [dm3] 3R_10137839_SNP [dm6]	T	C	1.186e^-4	0.629	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	11409369	X_11409369_SNP [dm3] X_11515336_SNP [dm6]	T	G	1.186e^-4	0.629	INTRON Drak	TF binding site mE1_TFBS_Kr
3L	5145560	3L_5145560_SNP [dm3] 3L_5152460_SNP [dm6]	T	A	1.189e^-4	0.629	UPSTREAM Srp54k & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11270074	3L_11270074_SNP [dm3] 3L_11276974_SNP [dm6]	A	G	1.193e^-4	0.629	INTERGENIC
2L	20860404	2L_20860404_SNP [dm3] 2L_20860404_SNP [dm6]	C	T	1.193e^-4	0.629	INTRON CG9336
3L	12052968	3L_12052968_SNP [dm3] 3L_12059868_SNP [dm6]	T	G	1.194e^-4	0.629	INTRON rols	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	2690048	X_2690048_SNP [dm3] X_2796015_SNP [dm6]	A	C	1.211e^-4	0.635	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	9735039	3L_9735039_SNP [dm3] 3L_9741939_SNP [dm6]	A	T	1.213e^-4	0.635	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9494569	2R_9494569_SNP [dm3] 2R_13607064_SNP [dm6]	A	G	1.215e^-4	0.635	INTERGENIC
X	6489864	X_6489864_SNP [dm3] X_6595831_SNP [dm6]	G	C	1.224e^-4	0.635	UTR_3_PRIME Pat1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	3437649	2L_3437649_SNP [dm3] 2L_3437649_SNP [dm6]	A	T	1.225e^-4	0.635	INTERGENIC
3L	7129112	3L_7129112_INS [dm3] 3L_7136012_INS [dm6]	G	GAAGAAGG	1.233e^-4	0.635	INTRON melt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10699904	3L_10699904_INS [dm3] 3L_10706804_INS [dm6]	A	AA	1.234e^-4	0.635	INTERGENIC
X	5538198	X_5538198_SNP [dm3] X_5644165_SNP [dm6]	G	A	1.235e^-4	0.635	INTRON CG42492
3L	9661340	3L_9661340_SNP [dm3] 3L_9668240_SNP [dm6]	C	G	1.237e^-4	0.635	INTRON fry	TF binding site mE1_TFBS_cad
2R	10544277	2R_10544277_SNP [dm3] 2R_14656772_SNP [dm6]	C	T	1.243e^-4	0.636	DOWNSTREAM Adgf-E INTERGENIC
2L	16239344	2L_16239344_SNP [dm3] 2L_16239344_SNP [dm6]	A	G	1.248e^-4	0.636	SYNONYMOUS_CODING CG42817
X	12665748	X_12665748_SNP [dm3] X_12771715_SNP [dm6]	C	T	1.249e^-4	0.636	UTR_3_PRIME CG3812 DOWNSTREAM CG32647 & 1 other
2L	9445125	2L_9445125_SNP [dm3] 2L_9445125_SNP [dm6]	T	C	1.251e^-4	0.636	INTRON numb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5234139	3L_5234139_INS [dm3] 3L_5241039_INS [dm6]	C	CC	1.259e^-4	0.637	INTRON shep
3R	6299585	3R_6299585_SNP [dm3] 3R_10473863_SNP [dm6]	G	T	1.261e^-4	0.637	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	12325195	2L_12325195_INS [dm3] 2L_12325195_INS [dm6]	A	ACGTAAAGCAAAATATTTTC...	1.264e^-4	0.637	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4737859	3L_4737859_SNP [dm3] 3L_4737859_SNP [dm6]	A	G	1.268e^-4	0.637	INTRON RhoGEF64C
3R	12497505	3R_12497505_SNP [dm3] 3R_16671783_SNP [dm6]	C	T	1.278e^-4	0.638	INTRON Ubx
3L	743080	3L_743080_SNP [dm3] 3L_743080_SNP [dm6]	T	A	1.283e^-4	0.638	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	19822550	2L_19822550_SNP [dm3] 2L_19822550_SNP [dm6]	A	C	1.286e^-4	0.638	INTRON sick
2R	8136797	2R_8136797_SNP [dm3] 2R_12249292_SNP [dm6]	G	A	1.293e^-4	0.638	INTERGENIC
3R	5129982	3R_5129982_SNP [dm3] 3R_9304260_SNP [dm6]	C	G	1.297e^-4	0.638	INTRON CG8861
3L	837721	3L_837721_SNP [dm3] 3L_837721_SNP [dm6]	C	G	1.302e^-4	0.638	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	536533	3L_536533_SNP [dm3] 3L_536533_SNP [dm6]	A	G	1.303e^-4	0.638	INTRON klar
2L	7025296	2L_7025296_SNP [dm3] 2L_7025296_SNP [dm6]	C	A	1.305e^-4	0.638	NON_SYNONYMOUS_CODING CG31908	TF binding site mE1_TFBS_cad
3L	3966395	3L_3966395_SNP [dm3] 3L_3966395_SNP [dm6]	C	T	1.309e^-4	0.638	INTERGENIC
3R	27129738	3R_27129738_SNP [dm3] 3R_31304016_SNP [dm6]	G	A	1.326e^-4	0.638	SYNONYMOUS_CODING CG11340
3R	10436858	3R_10436858_SNP [dm3] 3R_14611136_SNP [dm6]	T	C	1.329e^-4	0.638	INTRON CG14853
3L	15308481	3L_15308481_SNP [dm3] 3L_15315381_SNP [dm6]	G	A	1.332e^-4	0.638	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	7202015	2L_7202015_SNP [dm3] 2L_7202015_SNP [dm6]	C	A	1.336e^-4	0.638	INTRON CG4502
2R	14270955	2R_14270955_INS [dm3] 2R_18383450_INS [dm6]	A	AGTATACAAAAAGCAG...	1.337e^-4	0.638	UPSTREAM IM1 & 1 other INTERGENIC
3L	11277473	3L_11277473_SNP [dm3] 3L_11284373_SNP [dm6]	G	A	1.342e^-4	0.638	UPSTREAM CR45404 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	13341680	2L_13341680_DEL [dm3] 2L_13341680_DEL [dm6]	TAATGCAT	T	1.351e^-4	0.638	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	13272954	3L_13272954_SNP [dm3] 3L_13279854_SNP [dm6]	A	T	1.358e^-4	0.638	DOWNSTREAM caps & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	3291545	2L_3291545_SNP [dm3] 2L_3291545_SNP [dm6]	G	T	1.359e^-4	0.638	SYNONYMOUS_CODING CG9664 UTR_3_PRIME CG9664	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9444160	2L_9444160_SNP [dm3] 2L_9444160_SNP [dm6]	T	A	1.360e^-4	0.638	INTRON numb
3R	5709131	3R_5709131_SNP [dm3] 3R_9883409_SNP [dm6]	C	G	1.360e^-4	0.638	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4093939	X_4093939_SNP [dm3] X_4199906_SNP [dm6]	A	C	1.360e^-4	0.638	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	9515096	3L_9515096_SNP [dm3] 3L_9521996_SNP [dm6]	A	G	1.362e^-4	0.638	INTRON CG33700
2R	6795339	2R_6795339_SNP [dm3] 2R_10907834_SNP [dm6]	G	T	1.373e^-4	0.638	INTERGENIC
X	13998264	X_13998264_SNP [dm3] X_14104231_SNP [dm6]	C	G	1.384e^-4	0.638	UPSTREAM tRNA:S4:12Ee & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8136809	2R_8136809_SNP [dm3] 2R_12249304_SNP [dm6]	G	T	1.387e^-4	0.638	INTERGENIC
2R	4176364	2R_4176364_SNP [dm3] 2R_8288859_SNP [dm6]	T	C	1.402e^-4	0.638	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	7296139	3L_7296139_DEL [dm3] 3L_7303039_DEL [dm6]	AA	A	1.404e^-4	0.638	INTRON unc-13-4A
2L	21906150	2L_21906150_DEL [dm3] 2L_21906150_DEL [dm6]	CACCTCTG	C	1.419e^-4	0.638	UPSTREAM CG1428 INTERGENIC
3L	10025717	3L_10025717_DEL [dm3] 3L_10032617_DEL [dm6]	GCTTTTGTTTAGTC...	G	1.419e^-4	0.638	INTRON dpr6
2L	10085825	2L_10085825_SNP [dm3] 2L_10085825_SNP [dm6]	C	T	1.422e^-4	0.638	INTRON CG44153
2L	8447265	2L_8447265_SNP [dm3] 2L_8447265_SNP [dm6]	A	G	1.422e^-4	0.638	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	5129759	3R_5129759_SNP [dm3] 3R_9304037_SNP [dm6]	C	A	1.423e^-4	0.638	INTRON CG8861
3R	5121954	3R_5121954_SNP [dm3] 3R_9296232_SNP [dm6]	A	G	1.425e^-4	0.638	INTRON CG8861
3L	743033	3L_743033_SNP [dm3] 3L_743033_SNP [dm6]	C	T	1.426e^-4	0.638	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	15483243	3L_15483243_SNP [dm3] 3L_15490143_SNP [dm6]	G	C	1.431e^-4	0.638	INTERGENIC
3L	2981701	3L_2981701_SNP [dm3] 3L_2981701_SNP [dm6]	A	G	1.437e^-4	0.638	SYNONYMOUS_CODING CG2107	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	11321111	X_11321111_SNP [dm3] X_11427078_SNP [dm6]	C	G	1.437e^-4	0.638	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6643082	X_6643082_INS [dm3] X_6749049_INS [dm6]	A	AACAGAGA	1.438e^-4	0.638	INTRON CG14439
3R	24362223	3R_24362223_SNP [dm3] 3R_28536501_SNP [dm6]	C	T	1.443e^-4	0.638	INTRON Ppn
3R	9959340	3R_9959340_SNP [dm3] 3R_14133618_SNP [dm6]	C	T	1.444e^-4	0.638	INTERGENIC
2R	14271060	2R_14271060_SNP [dm3] 2R_18383555_SNP [dm6]	A	T	1.452e^-4	0.638	UPSTREAM IM1 & 1 other INTERGENIC
2R	14271062	2R_14271062_SNP [dm3] 2R_18383557_SNP [dm6]	T	G	1.452e^-4	0.638	UPSTREAM IM1 & 1 other INTERGENIC
X	7622393	X_7622393_SNP [dm3] X_7728360_SNP [dm6]	C	G	1.452e^-4	0.638	UTR_5_PRIME NELF-B UPSTREAM CG12155	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10265312	3L_10265312_SNP [dm3] 3L_10272212_SNP [dm6]	G	A	1.453e^-4	0.638	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	9463950	2L_9463950_SNP [dm3] 2L_9463950_SNP [dm6]	T	C	1.466e^-4	0.638	UTR_3_PRIME numb DOWNSTREAM numb
3L	10969435	3L_10969435_SNP [dm3] 3L_10976335_SNP [dm6]	A	C	1.470e^-4	0.638	INTERGENIC	TF binding site mE1_TFBS_cad
3L	16202260	3L_16202260_SNP [dm3] 3L_16209160_SNP [dm6]	A	C	1.472e^-4	0.638	INTERGENIC	TF binding site mE1_TFBS_cad
2L	21906159	2L_21906159_DEL [dm3] 2L_21906159_DEL [dm6]	TCGACA	T	1.477e^-4	0.638	UPSTREAM CG1428 INTERGENIC
3R	15096088	3R_15096088_SNP [dm3] 3R_19270366_SNP [dm6]	T	A	1.479e^-4	0.638	INTERGENIC
3L	14835275	3L_14835275_INS [dm3] 3L_14842175_INS [dm6]	T	TTGCAA	1.482e^-4	0.638	INTRON CG17839
3L	743084	3L_743084_INS [dm3] 3L_743084_INS [dm6]	T	TT	1.492e^-4	0.638	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	22768774	3R_22768774_SNP [dm3] 3R_26943052_SNP [dm6]	T	C	1.493e^-4	0.638	SYNONYMOUS_CODING sda	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	16862751	2R_16862751_SNP [dm3] 2R_20975246_SNP [dm6]	T	C	1.494e^-4	0.638	UPSTREAM CG34115 INTERGENIC
2R	10821694	2R_10821694_SNP [dm3] 2R_14934189_SNP [dm6]	C	A	1.498e^-4	0.638	UPSTREAM CG10253 DOWNSTREAM CG12853 INTRON CG10253	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	12273737	X_12273737_SNP [dm3] X_12379704_SNP [dm6]	G	A	1.501e^-4	0.638	INTERGENIC
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	1.504e^-4	0.638	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
X	14842374	X_14842374_INS [dm3] X_14948341_INS [dm6]	A	ACATAGTCCATAAGGTA...	1.508e^-4	0.638	INTRON pdgy	TF binding site mE1_TFBS_HSA
3L	6462979	3L_6462979_SNP [dm3] 3L_6469879_SNP [dm6]	T	A	1.511e^-4	0.638	INTRON CG42747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	16517576	2R_16517576_SNP [dm3] 2R_20630071_SNP [dm6]	T	C	1.513e^-4	0.638	SYNONYMOUS_CODING Rcd6	TF binding site mE1_TFBS_chinmo
2L	16239804	2L_16239804_SNP [dm3] 2L_16239804_SNP [dm6]	C	T	1.517e^-4	0.638	INTRON CG42817
X	11320946	X_11320946_SNP [dm3] X_11426913_SNP [dm6]	T	G	1.518e^-4	0.638	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19496781	3L_19496781_SNP [dm3] 3L_19503681_SNP [dm6]	G	A	1.519e^-4	0.638	START_GAINED CG9452 UTR_5_PRIME CG9452
3L	8532578	3L_8532578_SNP [dm3] 3L_8539478_SNP [dm6]	A	C	1.520e^-4	0.638	INTERGENIC
X	20561531	X_20561531_SNP [dm3] X_20690504_SNP [dm6]	A	T	1.527e^-4	0.638	UPSTREAM run EXON CR45610	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	9536658	X_9536658_SNP [dm3] X_9642625_SNP [dm6]	T	A	1.530e^-4	0.638	INTRON l_1_G0232	TF binding site mE1_TFBS_inv
2L	7365708	2L_7365708_SNP [dm3] 2L_7365708_SNP [dm6]	C	T	1.535e^-4	0.638	INTRON Wnt10
X	5661593	X_5661593_SNP [dm3] X_5767560_SNP [dm6]	C	T	1.536e^-4	0.638	SYNONYMOUS_CODING CG3097 INTRON CG42699	TF binding site mE1_TFBS_sens
2R	11802001	2R_11802001_SNP [dm3] 2R_15914496_SNP [dm6]	A	G	1.541e^-4	0.638	INTRON sli	TF binding site mE1_TFBS_cad
2R	16289150	2R_16289150_SNP [dm3] 2R_20401645_SNP [dm6]	G	A	1.550e^-4	0.638	INTERGENIC
X	7635997	X_7635997_SNP [dm3] X_7741964_SNP [dm6]	C	G	1.556e^-4	0.638	INTERGENIC
X	3380974	X_3380974_SNP [dm3] X_3486941_SNP [dm6]	G	A	1.560e^-4	0.638	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3381085	X_3381085_SNP [dm3] X_3487052_SNP [dm6]	G	C	1.560e^-4	0.638	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	20080617	3L_20080617_SNP [dm3] 3L_20087517_SNP [dm6]	A	C	1.565e^-4	0.638	INTRON sNPF-R
3L	1103305	3L_1103305_SNP [dm3] 3L_1103305_SNP [dm6]	T	G	1.566e^-4	0.638	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	14944446	2R_14944446_SNP [dm3] 2R_19056941_SNP [dm6]	C	T	1.568e^-4	0.638	INTERGENIC
3L	5569344	3L_5569344_SNP [dm3] 3L_5576244_SNP [dm6]	A	G	1.568e^-4	0.638	INTRON Msr-110
2R	8133682	2R_8133682_SNP [dm3] 2R_12246177_SNP [dm6]	T	A	1.571e^-4	0.638	DOWNSTREAM CR44315 INTERGENIC
3R	17353856	3R_17353856_SNP [dm3] 3R_21528134_SNP [dm6]	C	T	1.579e^-4	0.638	UTR_3_PRIME CG7956 DOWNSTREAM CG7956	TF binding site BDTNP1_TFBS_slp1
3L	7129114	3L_7129114_SNP [dm3] 3L_7136014_SNP [dm6]	G	A	1.579e^-4	0.638	INTRON melt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12055408	3L_12055408_SNP [dm3] 3L_12062308_SNP [dm6]	G	A	1.579e^-4	0.638	INTRON rols	TF binding site BDTNP1_TFBS_da
2L	5758251	2L_5758251_SNP [dm3] 2L_5758251_SNP [dm6]	C	A	1.584e^-4	0.638	INTRON CG11030
2L	21906167	2L_21906167_SNP [dm3] 2L_21906167_SNP [dm6]	A	T	1.586e^-4	0.638	UPSTREAM CG1428 INTERGENIC
3L	6710275	3L_6710275_SNP [dm3] 3L_6717175_SNP [dm6]	G	A	1.588e^-4	0.638	INTRON ple	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	22615421	3R_22615421_SNP [dm3] 3R_26789699_SNP [dm6]	T	A	1.589e^-4	0.638	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	19008611	2R_19008611_SNP [dm3] 2R_23121088_SNP [dm6]	G	A	1.594e^-4	0.638	INTERGENIC
2L	17324045	2L_17324045_SNP [dm3] 2L_17324045_SNP [dm6]	T	C	1.601e^-4	0.638	INTERGENIC
3L	1103414	3L_1103414_SNP [dm3] 3L_1103414_SNP [dm6]	T	C	1.602e^-4	0.638	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	18496192	2R_18496192_SNP [dm3] 2R_22608687_SNP [dm6]	T	C	1.607e^-4	0.638	SYNONYMOUS_CODING Vps20 DOWNSTREAM RpS16 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9493789	2R_9493789_SNP [dm3] 2R_13606284_SNP [dm6]	G	A	1.608e^-4	0.638	UPSTREAM CG34236 INTERGENIC
3L	9483255	3L_9483255_SNP [dm3] 3L_9490155_SNP [dm6]	T	C	1.613e^-4	0.638	UTR_3_PRIME CG32037 UPSTREAM CG32036	TF binding site mE1_TFBS_cad
X	7619130	X_7619130_SNP [dm3] X_7725097_SNP [dm6]	T	A	1.614e^-4	0.638	DOWNSTREAM NELF-B INTRON Hira	TF binding site mE1_TFBS_sens
2L	9104481	2L_9104481_SNP [dm3] 2L_9104481_SNP [dm6]	T	A	1.615e^-4	0.638	INTERGENIC
X	7618967	X_7618967_SNP [dm3] X_7724934_SNP [dm6]	T	C	1.620e^-4	0.638	SYNONYMOUS_CODING Hira
2R	7107070	2R_7107070_SNP [dm3] 2R_11219565_SNP [dm6]	T	C	1.623e^-4	0.638	UTR_5_PRIME Syx6 UPSTREAM Syx6 & 1 other INTRON CG9084	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	10759040	3L_10759040_SNP [dm3] 3L_10765940_SNP [dm6]	T	C	1.626e^-4	0.638	INTERGENIC
X	14182626	X_14182626_SNP [dm3] X_14288593_SNP [dm6]	G	A	1.628e^-4	0.638	DOWNSTREAM Muc12Ea INTRON CG9400
2L	9430498	2L_9430498_SNP [dm3] 2L_9430498_SNP [dm6]	T	A	1.630e^-4	0.638	UPSTREAM FucTB & 1 other INTRON FucTB
X	7617550	X_7617550_SNP [dm3] X_7723517_SNP [dm6]	T	C	1.633e^-4	0.638	SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	7721690	3L_7721690_SNP [dm3] 3L_7728590_SNP [dm6]	T	G	1.641e^-4	0.638	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
3L	9508876	3L_9508876_SNP [dm3] 3L_9515776_SNP [dm6]	G	T	1.641e^-4	0.638	INTRON CG33700
2R	12696827	2R_12696827_SNP [dm3] 2R_16809322_SNP [dm6]	C	A	1.641e^-4	0.638	INTERGENIC
2L	7202011	2L_7202011_SNP [dm3] 2L_7202011_SNP [dm6]	G	A	1.644e^-4	0.638	INTRON CG4502
2R	14271068	2R_14271068_DEL [dm3] 2R_18383563_DEL [dm6]	TGCTTTT	T	1.647e^-4	0.638	UPSTREAM IM1 & 2 others INTERGENIC
2R	14269786	2R_14269786_SNP [dm3] 2R_18382281_SNP [dm6]	G	T	1.653e^-4	0.638	UPSTREAM CG43202 DOWNSTREAM IM23 INTERGENIC
2R	19007092	2R_19007092_SNP [dm3] 2R_23119569_SNP [dm6]	G	T	1.665e^-4	0.638	INTERGENIC
3R	20479009	3R_20479009_SNP [dm3] 3R_24653287_SNP [dm6]	A	T	1.668e^-4	0.638	UTR_3_PRIME ash2 DOWNSTREAM CG31125	TF binding site mE1_TFBS_chinmo
X	20262202	X_20262202_SNP [dm3] X_20391175_SNP [dm6]	C	A	1.668e^-4	0.638	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2645041	3L_2645041_SNP [dm3] 3L_2645041_SNP [dm6]	G	T	1.671e^-4	0.638	UPSTREAM CG1143 INTERGENIC
X	2554105	X_2554105_SNP [dm3] X_2660072_SNP [dm6]	T	C	1.672e^-4	0.638	SYNONYMOUS_CODING sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24132597	3R_24132597_SNP [dm3] 3R_28306875_SNP [dm6]	A	T	1.688e^-4	0.638	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	7202010	2L_7202010_SNP [dm3] 2L_7202010_SNP [dm6]	C	T	1.690e^-4	0.638	INTRON CG4502
3R	14395022	3R_14395022_SNP [dm3] 3R_18569300_SNP [dm6]	G	A	1.692e^-4	0.638	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	7467600	3L_7467600_SNP [dm3] 3L_7474500_SNP [dm6]	T	C	1.692e^-4	0.638	INTERGENIC
X	3381344	X_3381344_SNP [dm3] X_3487311_SNP [dm6]	T	C	1.700e^-4	0.638	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_sens
3R	25912708	3R_25912708_SNP [dm3] 3R_30086986_SNP [dm6]	C	A	1.704e^-4	0.638	INTRON sima
2L	9105311	2L_9105311_SNP [dm3] 2L_9105311_SNP [dm6]	G	T	1.708e^-4	0.638	INTERGENIC
2R	11177864	2R_11177864_SNP [dm3] 2R_15290359_SNP [dm6]	A	G	1.708e^-4	0.638	INTRON Trpm
2L	11467694	2L_11467694_SNP [dm3] 2L_11467694_SNP [dm6]	C	T	1.715e^-4	0.638	INTERGENIC
3L	7721452	3L_7721452_SNP [dm3] 3L_7728352_SNP [dm6]	A	G	1.718e^-4	0.638	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
X	11320947	X_11320947_SNP [dm3] X_11426914_SNP [dm6]	T	C	1.721e^-4	0.638	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11573868	2R_11573868_SNP [dm3] 2R_15686363_SNP [dm6]	C	T	1.723e^-4	0.638	SYNONYMOUS_CODING Ranbp11 UPSTREAM CG30082	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3R	4313161	3R_4313161_SNP [dm3] 3R_8487439_SNP [dm6]	G	A	1.726e^-4	0.638	INTERGENIC
3L	11843425	3L_11843425_SNP [dm3] 3L_11850325_SNP [dm6]	T	A	1.728e^-4	0.638	DOWNSTREAM CG44837 INTERGENIC
X	6993925	X_6993925_SNP [dm3] X_7099892_SNP [dm6]	C	A	1.733e^-4	0.638	SYNONYMOUS_CODING CG4615	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14271066	2R_14271066_SNP [dm3] 2R_18383561_SNP [dm6]	T	A	1.733e^-4	0.638	UPSTREAM IM1 & 1 other INTERGENIC
2L	2707543	2L_2707543_SNP [dm3] 2L_2707543_SNP [dm6]	C	A	1.738e^-4	0.638	INTRON CG31690
2L	9506593	2L_9506593_SNP [dm3] 2L_9506593_SNP [dm6]	G	T	1.743e^-4	0.638	INTRON CG33298
3R	26667135	3R_26667135_SNP [dm3] 3R_30841413_SNP [dm6]	A	C	1.745e^-4	0.638	UTR_3_PRIME CG15544	TF binding site mE1_TFBS_cad
X	7617541	X_7617541_SNP [dm3] X_7723508_SNP [dm6]	C	A	1.748e^-4	0.638	SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	13887805	3L_13887805_SNP [dm3] 3L_13894705_SNP [dm6]	C	T	1.752e^-4	0.638	INTRON dysc
X	6058381	X_6058381_SNP [dm3] X_6164348_SNP [dm6]	T	C	1.763e^-4	0.638	INTRON Ca-alpha1T
3R	21344585	3R_21344585_SNP [dm3] 3R_25518863_SNP [dm6]	G	T	1.765e^-4	0.638	INTRON msi	TF binding site mE1_TFBS_Trl
2L	7343130	2L_7343130_SNP [dm3] 2L_7343130_SNP [dm6]	G	T	1.767e^-4	0.638	INTRON Wnt6
X	7622376	X_7622376_INS [dm3] X_7728343_INS [dm6]	T	TT	1.770e^-4	0.638	UTR_5_PRIME NELF-B UPSTREAM CG12155	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	12772793	X_12772793_SNP [dm3] X_12878760_SNP [dm6]	T	A	1.771e^-4	0.638	INTRON Pde9
2R	14671796	2R_14671796_SNP [dm3] 2R_18784291_SNP [dm6]	G	A	1.772e^-4	0.638	INTRON CG15080	enhancer mE1_CBP_Enhancers
2L	8448676	2L_8448676_SNP [dm3] 2L_8448676_SNP [dm6]	G	T	1.772e^-4	0.638	SYNONYMOUS_CODING U26
X	8633305	X_8633305_SNP [dm3] X_8739272_SNP [dm6]	A	T	1.776e^-4	0.638	INTERGENIC
X	4093952	X_4093952_SNP [dm3] X_4199919_SNP [dm6]	A	T	1.778e^-4	0.638	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	22242029	3R_22242029_SNP [dm3] 3R_26416307_SNP [dm6]	G	A	1.785e^-4	0.638	DOWNSTREAM CG5432 INTERGENIC
X	12665890	X_12665890_SNP [dm3] X_12771857_SNP [dm6]	C	G	1.786e^-4	0.638	UTR_3_PRIME CG3812 & 1 other DOWNSTREAM CG3812
3R	24133165	3R_24133165_SNP [dm3] 3R_28307443_SNP [dm6]	A	G	1.788e^-4	0.638	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	5594395	X_5594395_SNP [dm3] X_5700362_SNP [dm6]	G	T	1.788e^-4	0.638	INTRON CG4096
3L	7836670	3L_7836670_SNP [dm3] 3L_7843570_SNP [dm6]	T	C	1.788e^-4	0.638	INTRON Pdp1	regulatory region REDfly_CRMs
2R	20191493	2R_20191493_SNP [dm3] 2R_24303970_SNP [dm6]	G	A	1.793e^-4	0.638	INTERGENIC	regulatory region REDfly_CRMs
2R	13556727	2R_13556727_SNP [dm3] 2R_17669222_SNP [dm6]	A	T	1.799e^-4	0.638	UTR_3_PRIME eIF3-S8 UPSTREAM CG30108 & 1 other DOWNSTREAM eIF3-S8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
3L	391184	3L_391184_SNP [dm3] 3L_391184_SNP [dm6]	C	A	1.801e^-4	0.638	DOWNSTREAM CR45378 INTRON trh
X	15413677	X_15413677_SNP [dm3] X_15519644_SNP [dm6]	C	G	1.802e^-4	0.638	INTRON Ac13E
2R	11340700	2R_11340700_SNP [dm3] 2R_15453195_SNP [dm6]	T	G	1.803e^-4	0.638	INTRON CG43729
X	18464186	X_18464186_SNP [dm3] X_18570153_SNP [dm6]	C	A	1.808e^-4	0.638	INTRON Bx	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
3R	17684793	3R_17684793_SNP [dm3] 3R_21859071_SNP [dm6]	A	C	1.809e^-4	0.638	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3796517	2L_3796517_SNP [dm3] 2L_3796517_SNP [dm6]	T	C	1.810e^-4	0.638	SYNONYMOUS_CODING CG3921
3L	312104	3L_312104_SNP [dm3] 3L_312104_SNP [dm6]	C	T	1.815e^-4	0.638	UPSTREAM fwd INTRON fwd	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	7619303	X_7619303_SNP [dm3] X_7725270_SNP [dm6]	A	C	1.817e^-4	0.638	NON_SYNONYMOUS_CODING Hira DOWNSTREAM NELF-B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13682419	3R_13682419_SNP [dm3] 3R_17856697_SNP [dm6]	T	C	1.821e^-4	0.638	INTRON tinc
3R	13682437	3R_13682437_SNP [dm3] 3R_17856715_SNP [dm6]	G	C	1.821e^-4	0.638	INTRON tinc
3L	4737892	3L_4737892_SNP [dm3] 3L_4737892_SNP [dm6]	T	C	1.822e^-4	0.638	INTRON RhoGEF64C
2L	2279895	2L_2279895_SNP [dm3] 2L_2279895_SNP [dm6]	G	A	1.822e^-4	0.638	UPSTREAM CR43753 INTERGENIC
3L	2645044	3L_2645044_SNP [dm3] 3L_2645044_SNP [dm6]	T	G	1.829e^-4	0.638	UPSTREAM CG1143 INTERGENIC
2L	9111772	2L_9111772_SNP [dm3] 2L_9111772_SNP [dm6]	G	C	1.830e^-4	0.638	UPSTREAM Or30a INTERGENIC
3R	21405169	3R_21405169_SNP [dm3] 3R_25579447_SNP [dm6]	C	T	1.831e^-4	0.638	INTRON msi
3L	2644985	3L_2644985_SNP [dm3] 3L_2644985_SNP [dm6]	T	A	1.832e^-4	0.638	UPSTREAM CG1143 INTERGENIC
X	14090881	X_14090881_SNP [dm3] X_14196848_SNP [dm6]	T	C	1.836e^-4	0.638	SYNONYMOUS_CODING yl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2645491	3L_2645491_SNP [dm3] 3L_2645491_SNP [dm6]	A	T	1.838e^-4	0.638	INTRON CG1143
2R	15428091	2R_15428091_SNP [dm3] 2R_19540586_SNP [dm6]	C	A	1.842e^-4	0.638	INTRON sm
X	17945999	X_17945999_SNP [dm3] X_18051966_SNP [dm6]	T	C	1.848e^-4	0.638	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12056988	3L_12056988_SNP [dm3] 3L_12063888_SNP [dm6]	A	G	1.849e^-4	0.638	INTRON rols
3R	13926754	3R_13926754_SNP [dm3] 3R_18101032_SNP [dm6]	C	T	1.853e^-4	0.638	INTRON sr
2L	21851919	2L_21851919_INS [dm3] 2L_21851919_INS [dm6]	T	TTCT	1.855e^-4	0.638	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	16180475	2L_16180475_SNP [dm3] 2L_16180475_SNP [dm6]	T	A	1.856e^-4	0.638	INTRON Ca-alpha1D
2L	9105472	2L_9105472_SNP [dm3] 2L_9105472_SNP [dm6]	A	T	1.857e^-4	0.638	INTERGENIC
2L	9439036	2L_9439036_SNP [dm3] 2L_9439036_SNP [dm6]	G	C	1.858e^-4	0.638	DOWNSTREAM CG33723 INTRON numb
3R	6218645	3R_6218645_SNP [dm3] 3R_10392923_SNP [dm6]	A	G	1.862e^-4	0.638	INTRON cwo
3R	20478993	3R_20478993_SNP [dm3] 3R_24653271_SNP [dm6]	G	T	1.863e^-4	0.638	UTR_3_PRIME ash2 DOWNSTREAM CG31125	TF binding site mE1_TFBS_chinmo
3R	20478904	3R_20478904_SNP [dm3] 3R_24653182_SNP [dm6]	T	C	1.867e^-4	0.638	SYNONYMOUS_CODING ash2 DOWNSTREAM CG31125
X	2552680	X_2552680_SNP [dm3] X_2658647_SNP [dm6]	A	C	1.867e^-4	0.638	UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	15308611	3L_15308611_SNP [dm3] 3L_15315511_SNP [dm6]	T	C	1.873e^-4	0.638	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	17926699	2R_17926699_SNP [dm3] 2R_22039194_SNP [dm6]	G	A	1.877e^-4	0.638	INTRON CG34370
2R	11278216	2R_11278216_SNP [dm3] 2R_15390711_SNP [dm6]	T	C	1.879e^-4	0.638	INTERGENIC
X	8156849	X_8156849_SNP [dm3] X_8262816_SNP [dm6]	T	C	1.882e^-4	0.638	INTRON CG1632	TF binding site BDTNP1_TFBS_da
2R	6795340	2R_6795340_SNP [dm3] 2R_10907835_SNP [dm6]	A	G	1.890e^-4	0.639	INTERGENIC
3L	18202714	3L_18202714_SNP [dm3] 3L_18209614_SNP [dm6]	T	G	1.891e^-4	0.639	INTERGENIC
3L	9317825	3L_9317825_SNP [dm3] 3L_9324725_SNP [dm6]	T	C	1.903e^-4	0.641	INTERGENIC
2R	3492549	2R_3492549_SNP [dm3] 2R_7605044_SNP [dm6]	C	A	1.905e^-4	0.641	INTRON CG1358	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15614495	3L_15614495_SNP [dm3] 3L_15621395_SNP [dm6]	C	A	1.910e^-4	0.641	NON_SYNONYMOUS_CODING CG7372 INTRON comm3	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	4361746	3R_4361746_SNP [dm3] 3R_8536024_SNP [dm6]	C	T	1.912e^-4	0.641	INTERGENIC
X	10517805	X_10517805_SNP [dm3] X_10623772_SNP [dm6]	G	C	1.925e^-4	0.643	UTR_3_PRIME CG9806 UPSTREAM Rab9Db
2R	3079221	2R_3079221_SNP [dm3] 2R_7191716_SNP [dm6]	C	A	1.926e^-4	0.643	INTRON pk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8137206	2R_8137206_SNP [dm3] 2R_12249701_SNP [dm6]	T	C	1.932e^-4	0.643	INTERGENIC
3R	24133221	3R_24133221_SNP [dm3] 3R_28307499_SNP [dm6]	C	G	1.934e^-4	0.643	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	18260542	X_18260542_SNP [dm3] X_18366509_SNP [dm6]	G	T	1.938e^-4	0.643	START_GAINED CrebB UTR_5_PRIME CrebB UPSTREAM CrebB	TF binding site BDTNP1_TFBS_dl
3L	9661315	3L_9661315_SNP [dm3] 3L_9668215_SNP [dm6]	A	G	1.939e^-4	0.643	INTRON fry	TF binding site mE1_TFBS_cad
2L	7300717	2L_7300717_SNP [dm3] 2L_7300717_SNP [dm6]	C	T	1.945e^-4	0.644	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9105664	2L_9105664_SNP [dm3] 2L_9105664_SNP [dm6]	G	A	1.948e^-4	0.644	INTERGENIC
3L	15483300	3L_15483300_SNP [dm3] 3L_15490200_SNP [dm6]	A	C	1.950e^-4	0.644	INTERGENIC
3L	17891665	3L_17891665_SNP [dm3] 3L_17898565_SNP [dm6]	G	A	1.960e^-4	0.646	DOWNSTREAM Prestin INTERGENIC
3R	21876370	3R_21876370_SNP [dm3] 3R_26050648_SNP [dm6]	T	G	1.971e^-4	0.647	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10482563	2L_10482563_SNP [dm3] 2L_10482563_SNP [dm6]	C	A	1.972e^-4	0.647	NON_SYNONYMOUS_CODING RluA-2 UTR_3_PRIME RluA-2 UPSTREAM Grip75	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	17672196	3L_17672196_SNP [dm3] 3L_17679096_SNP [dm6]	A	G	1.978e^-4	0.648	INTRON CG34251
2R	17904309	2R_17904309_SNP [dm3] 2R_22016804_SNP [dm6]	T	A	1.987e^-4	0.65	INTRON CG34370
3L	14955046	3L_14955046_SNP [dm3] 3L_14961946_SNP [dm6]	T	C	2.000e^-4	0.653	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27129490	3R_27129490_SNP [dm3] 3R_31303768_SNP [dm6]	A	G	2.003e^-4	0.653	SYNONYMOUS_CODING CG11340	TF binding site mE1_TFBS_sens
3L	7835523	3L_7835523_SNP [dm3] 3L_7842423_SNP [dm6]	C	G	2.008e^-4	0.654	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	742992	3L_742992_DEL [dm3] 3L_742992_DEL [dm6]	ATGGTTTTTGATAACTAA...	A	2.034e^-4	0.66	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	13582492	3R_13582492_SNP [dm3] 3R_17756770_SNP [dm6]	T	G	2.036e^-4	0.66	INTRON TyrR	TF binding site mE1_TFBS_chinmo
X	20561606	X_20561606_SNP [dm3] X_20690579_SNP [dm6]	C	T	2.040e^-4	0.661	UPSTREAM run EXON CR45610	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	15292548	3R_15292548_SNP [dm3] 3R_19466826_SNP [dm6]	C	G	2.051e^-4	0.662	INTRON Dys
2R	12453917	2R_12453917_SNP [dm3] 2R_16566412_SNP [dm6]	C	T	2.052e^-4	0.662	INTRON CG4945
3R	18780271	3R_18780271_SNP [dm3] 3R_22954549_SNP [dm6]	G	A	2.064e^-4	0.663	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	3287436	X_3287436_SNP [dm3] X_3393403_SNP [dm6]	C	T	2.074e^-4	0.663	SYNONYMOUS_CODING CG12535 INTRON CR44999	TF binding site mE1_TFBS_HSA
X	3287521	X_3287521_SNP [dm3] X_3393488_SNP [dm6]	T	C	2.074e^-4	0.663	UTR_5_PRIME CG12535 INTRON CR44999	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	3465305	X_3465305_SNP [dm3] X_3571272_SNP [dm6]	G	A	2.076e^-4	0.663	SYNONYMOUS_CODING ppk8 DOWNSTREAM CG2875 INTRON CG32791
2L	9463956	2L_9463956_SNP [dm3] 2L_9463956_SNP [dm6]	C	A	2.083e^-4	0.663	UTR_3_PRIME numb DOWNSTREAM numb
2L	12325115	2L_12325115_SNP [dm3] 2L_12325115_SNP [dm6]	T	C	2.085e^-4	0.663	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20262200	X_20262200_SNP [dm3] X_20391173_SNP [dm6]	G	A	2.086e^-4	0.663	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16202369	3L_16202369_SNP [dm3] 3L_16209269_SNP [dm6]	G	A	2.091e^-4	0.663	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9685540	3L_9685540_SNP [dm3] 3L_9692440_SNP [dm6]	A	G	2.094e^-4	0.663	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	7721501	3L_7721501_SNP [dm3] 3L_7728401_SNP [dm6]	T	G	2.097e^-4	0.663	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
2R	13687918	2R_13687918_INS [dm3] 2R_17800413_INS [dm6]	C	CGCACAC	2.098e^-4	0.663	UTR_3_PRIME Dhit UPSTREAM grh DOWNSTREAM CR45270	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	17323053	3L_17323053_SNP [dm3] 3L_17329953_SNP [dm6]	A	T	2.098e^-4	0.663	UPSTREAM Or74a INTERGENIC
3L	12055437	3L_12055437_SNP [dm3] 3L_12062337_SNP [dm6]	C	G	2.104e^-4	0.664	INTRON rols	TF binding site BDTNP1_TFBS_da
X	8156894	X_8156894_INS [dm3] X_8262861_INS [dm6]	T	TTCCACGCTCCGAACCAAAT...	2.127e^-4	0.666	INTRON CG1632	TF binding site BDTNP1_TFBS_da
3R	12502299	3R_12502299_SNP [dm3] 3R_16676577_SNP [dm6]	C	A	2.127e^-4	0.666	INTRON Ubx	TF binding site mE1_TFBS_cad
3L	14835265	3L_14835265_SNP [dm3] 3L_14842165_SNP [dm6]	T	C	2.130e^-4	0.666	INTRON CG17839
2L	6499760	2L_6499760_SNP [dm3] 2L_6499760_SNP [dm6]	G	A	2.136e^-4	0.666	SYNONYMOUS_CODING CG31637	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	8178778	3L_8178778_SNP [dm3] 3L_8185678_SNP [dm6]	C	T	2.138e^-4	0.666	UPSTREAM ERR INTRON ERR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
3L	1073755	3L_1073755_DEL [dm3] 3L_1073755_DEL [dm6]	TGCCCGCCT	T	2.139e^-4	0.666	INTRON bab1
X	3035763	X_3035763_DEL [dm3] X_3141730_DEL [dm6]	GG	G	2.145e^-4	0.666	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	4842259	3L_4842259_SNP [dm3] 3L_4842259_SNP [dm6]	T	C	2.151e^-4	0.666	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	7993142	X_7993142_SNP [dm3] X_8099109_SNP [dm6]	T	A	2.156e^-4	0.666	INTRON CG2258	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22153955	3R_22153955_SNP [dm3] 3R_26328233_SNP [dm6]	A	T	2.158e^-4	0.666	INTRON CG33970
3L	11843421	3L_11843421_SNP [dm3] 3L_11850321_SNP [dm6]	G	C	2.176e^-4	0.666	DOWNSTREAM CG44837 INTERGENIC
2L	5456944	2L_5456944_SNP [dm3] 2L_5456944_SNP [dm6]	G	A	2.178e^-4	0.666	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14816407	3L_14816407_SNP [dm3] 3L_14823307_SNP [dm6]	T	G	2.178e^-4	0.666	INTRON CG17839
3L	20080577	3L_20080577_SNP [dm3] 3L_20087477_SNP [dm6]	T	A	2.183e^-4	0.666	INTRON sNPF-R
3L	837662	3L_837662_SNP [dm3] 3L_837662_SNP [dm6]	A	C	2.183e^-4	0.666	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	9103236	2L_9103236_SNP [dm3] 2L_9103236_SNP [dm6]	C	T	2.184e^-4	0.666	INTERGENIC
2R	16128279	2R_16128279_SNP [dm3] 2R_20240774_SNP [dm6]	A	G	2.186e^-4	0.666	INTRON Efhc1.2
3L	4841343	3L_4841343_SNP [dm3] 3L_4841343_SNP [dm6]	A	C	2.186e^-4	0.666	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	11532947	3L_11532947_SNP [dm3] 3L_11539847_SNP [dm6]	A	G	2.188e^-4	0.666	INTRON Mob2
2R	9127641	2R_9127641_SNP [dm3] 2R_13240136_SNP [dm6]	C	T	2.192e^-4	0.666	SYNONYMOUS_CODING GstE14 UPSTREAM CG4679	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9940463	2R_9940463_SNP [dm3] 2R_14052958_SNP [dm6]	G	C	2.193e^-4	0.666	INTRON mam
3L	3699414	3L_3699414_SNP [dm3] 3L_3699414_SNP [dm6]	C	T	2.197e^-4	0.666	INTERGENIC
2R	19553902	2R_19553902_SNP [dm3] 2R_23666379_SNP [dm6]	G	C	2.197e^-4	0.666	UPSTREAM Pde8 INTRON Pde8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	7611716	X_7611716_SNP [dm3] X_7717683_SNP [dm6]	C	T	2.200e^-4	0.666	INTRON CG15478
3R	13682812	3R_13682812_SNP [dm3] 3R_17857090_SNP [dm6]	G	C	2.200e^-4	0.666	INTRON tinc
X	7613628	X_7613628_SNP [dm3] X_7719595_SNP [dm6]	G	A	2.214e^-4	0.669	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10998487	2R_10998487_SNP [dm3] 2R_15110982_SNP [dm6]	T	C	2.221e^-4	0.669	INTERGENIC
3R	5137887	3R_5137887_SNP [dm3] 3R_9312165_SNP [dm6]	A	G	2.230e^-4	0.669	INTRON CG8861
3R	22618986	3R_22618986_SNP [dm3] 3R_26793264_SNP [dm6]	A	T	2.242e^-4	0.669	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7321694	3R_7321694_SNP [dm3] 3R_11495972_SNP [dm6]	T	C	2.242e^-4	0.669	INTERGENIC
3L	13549841	3L_13549841_SNP [dm3] 3L_13556741_SNP [dm6]	A	G	2.243e^-4	0.669	INTRON bru-3
3L	15483291	3L_15483291_SNP [dm3] 3L_15490191_SNP [dm6]	A	T	2.245e^-4	0.669	INTERGENIC
3R	6253307	3R_6253307_SNP [dm3] 3R_10427585_SNP [dm6]	G	T	2.249e^-4	0.669	INTERGENIC
3L	6902842	3L_6902842_SNP [dm3] 3L_6909742_SNP [dm6]	C	T	2.251e^-4	0.669	INTERGENIC
3R	4349280	3R_4349280_SNP [dm3] 3R_8523558_SNP [dm6]	T	C	2.253e^-4	0.669	UPSTREAM CG31259 DOWNSTREAM CG31454 INTERGENIC
2R	1082079	2R_1082079_SNP [dm3] 2R_5194574_SNP [dm6]	T	A	2.255e^-4	0.669	INTRON Nipped-A	transposable element FlyBase
3L	9515093	3L_9515093_SNP [dm3] 3L_9521993_SNP [dm6]	C	G	2.262e^-4	0.669	INTRON CG33700
3L	13310290	3L_13310290_SNP [dm3] 3L_13317190_SNP [dm6]	T	G	2.264e^-4	0.669	INTERGENIC
2L	629183	2L_629183_SNP [dm3] 2L_629183_SNP [dm6]	C	A	2.276e^-4	0.669	DOWNSTREAM CG2839 & 1 other INTERGENIC
3L	9825589	3L_9825589_SNP [dm3] 3L_9832489_SNP [dm6]	C	A	2.277e^-4	0.669	SYNONYMOUS_CODING CG43897 UTR_3_PRIME CG43897
2L	1862418	2L_1862418_SNP [dm3] 2L_1862418_SNP [dm6]	G	A	2.280e^-4	0.669	INTRON CG31663
3L	5888623	3L_5888623_SNP [dm3] 3L_5895523_SNP [dm6]	T	G	2.282e^-4	0.669	DOWNSTREAM Pole2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1787294	2R_1787294_SNP [dm3] 2R_5899789_SNP [dm6]	G	T	2.283e^-4	0.669	INTRON CG43366	TF binding site mE1_TFBS_Trl
3L	1103325	3L_1103325_SNP [dm3] 3L_1103325_SNP [dm6]	C	T	2.285e^-4	0.669	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	12193614	2R_12193614_SNP [dm3] 2R_16306109_SNP [dm6]	G	A	2.293e^-4	0.669	EXON CR45232
3L	4762195	3L_4762195_DEL [dm3] 3L_4762195_DEL [dm6]	GGAATTTATATTAA...	T	2.297e^-4	0.669	INTRON RhoGEF64C
X	743728	X_743728_SNP [dm3] X_849695_SNP [dm6]	C	T	2.298e^-4	0.669	INTRON CG43867
3L	14925731	3L_14925731_MNP [dm3] 3L_14932631_MNP [dm6]	TGTA	ATGG	2.298e^-4	0.669	INTRON DCX-EMAP
2L	14043664	2L_14043664_SNP [dm3] 2L_14043664_SNP [dm6]	T	C	2.299e^-4	0.669	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	606460	2L_606460_SNP [dm3] 2L_606460_SNP [dm6]	T	C	2.301e^-4	0.669	DOWNSTREAM CR43648 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14489354	3L_14489354_SNP [dm3] 3L_14496254_SNP [dm6]	T	A	2.303e^-4	0.669	INTRON bbg	TF binding site mE1_TFBS_cad
X	17947626	X_17947626_SNP [dm3] X_18053593_SNP [dm6]	G	A	2.309e^-4	0.67	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7473829	3L_7473829_SNP [dm3] 3L_7480729_SNP [dm6]	C	G	2.316e^-4	0.671	INTERGENIC	TF binding site mE1_TFBS_inv
3R	18480179	3R_18480179_SNP [dm3] 3R_22654457_SNP [dm6]	G	A	2.323e^-4	0.672	INTRON CG45058
2L	9445153	2L_9445153_SNP [dm3] 2L_9445153_SNP [dm6]	T	C	2.334e^-4	0.674	INTRON numb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9716737	3L_9716737_SNP [dm3] 3L_9723637_SNP [dm6]	C	T	2.341e^-4	0.674	SYNONYMOUS_CODING defl UPSTREAM nbs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	17672015	3L_17672015_SNP [dm3] 3L_17678915_SNP [dm6]	A	T	2.343e^-4	0.674	INTRON CG34251
X	21171393	X_21171393_SNP [dm3] X_21300366_SNP [dm6]	G	C	2.345e^-4	0.674	UTR_5_PRIME CG1718
2L	502378	2L_502378_INS [dm3] 2L_502378_INS [dm6]	A	ATTGTA	2.348e^-4	0.674	INTRON ush
2R	13745550	2R_13745550_SNP [dm3] 2R_17858045_SNP [dm6]	A	G	2.352e^-4	0.674	INTRON olf186-F
3L	17193388	3L_17193388_SNP [dm3] 3L_17200288_SNP [dm6]	T	A	2.353e^-4	0.674	INTRON Rbp6
3L	14815037	3L_14815037_SNP [dm3] 3L_14821937_SNP [dm6]	A	C	2.372e^-4	0.675	INTRON CG17839
3R	4187880	3R_4187880_SNP [dm3] 3R_8362158_SNP [dm6]	T	C	2.373e^-4	0.675	NON_SYNONYMOUS_CODING CG9684 UPSTREAM CG7963	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	7527684	2L_7527684_SNP [dm3] 2L_7527684_SNP [dm6]	A	T	2.373e^-4	0.675	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	4956236	2R_4956236_INS [dm3] 2R_9068731_INS [dm6]	A	AA	2.375e^-4	0.675	UPSTREAM ana INTRON ana
2R	11799257	2R_11799257_SNP [dm3] 2R_15911752_SNP [dm6]	A	G	2.381e^-4	0.675	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	13557740	2R_13557740_SNP [dm3] 2R_17670235_SNP [dm6]	C	T	2.384e^-4	0.675	SYNONYMOUS_CODING CG30109 UPSTREAM CR44404 DOWNSTREAM eIF3-S8 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2021720	2L_2021720_SNP [dm3] 2L_2021720_SNP [dm6]	T	A	2.386e^-4	0.675	INTRON CG4238
3R	13600160	3R_13600160_INS [dm3] 3R_17774438_INS [dm6]	T	TTTT	2.388e^-4	0.675	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3L	7719564	3L_7719564_SNP [dm3] 3L_7726464_SNP [dm6]	A	C	2.412e^-4	0.677	UTR_5_PRIME CG7457 INTRON CG32373	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	22883797	3L_22883797_SNP [dm3] 3L_22890697_SNP [dm6]	A	G	2.412e^-4	0.677	INTRON slif	transposable element FlyBase
3L	2646310	3L_2646310_SNP [dm3] 3L_2646310_SNP [dm6]	T	C	2.415e^-4	0.677	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9483249	3L_9483249_SNP [dm3] 3L_9490149_SNP [dm6]	G	T	2.421e^-4	0.677	UTR_3_PRIME CG32037 UPSTREAM CG32036	TF binding site mE1_TFBS_cad
X	10517804	X_10517804_SNP [dm3] X_10623771_SNP [dm6]	A	G	2.424e^-4	0.677	UTR_3_PRIME CG9806 UPSTREAM Rab9Db
2R	9457779	2R_9457779_SNP [dm3] 2R_13570274_SNP [dm6]	A	T	2.424e^-4	0.677	DOWNSTREAM CG42807 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2R	16923365	2R_16923365_SNP [dm3] 2R_21035860_SNP [dm6]	C	G	2.427e^-4	0.677	INTERGENIC
3R	17823921	3R_17823921_SNP [dm3] 3R_21998199_SNP [dm6]	C	T	2.430e^-4	0.677	INTRON Eip93F
3L	9483340	3L_9483340_SNP [dm3] 3L_9490240_SNP [dm6]	A	C	2.430e^-4	0.677	INTRON CG32037	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9515094	3L_9515094_SNP [dm3] 3L_9521994_SNP [dm6]	T	A	2.439e^-4	0.677	INTRON CG33700
2R	12443558	2R_12443558_INS [dm3] 2R_16556053_INS [dm6]	T	TT	2.440e^-4	0.677	INTRON Syn2
3R	10120953	3R_10120953_SNP [dm3] 3R_14295231_SNP [dm6]	T	C	2.441e^-4	0.677	INTRON CG12207
3R	16890386	3R_16890386_SNP [dm3] 3R_21064664_SNP [dm6]	A	G	2.441e^-4	0.677	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2R	14671861	2R_14671861_SNP [dm3] 2R_18784356_SNP [dm6]	T	A	2.446e^-4	0.677	INTRON CG15080	enhancer mE1_CBP_Enhancers
2R	12078185	2R_12078185_SNP [dm3] 2R_16190680_SNP [dm6]	C	A	2.454e^-4	0.679	NON_SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17289541	2L_17289541_SNP [dm3] 2L_17289541_SNP [dm6]	C	T	2.459e^-4	0.679	INTERGENIC
X	19690855	X_19690855_SNP [dm3] X_19796822_SNP [dm6]	G	C	2.471e^-4	0.681	INTERGENIC
3L	3103931	3L_3103931_SNP [dm3] 3L_3103931_SNP [dm6]	T	C	2.480e^-4	0.683	INTRON Cht7
3L	18575735	3L_18575735_SNP [dm3] 3L_18582635_SNP [dm6]	C	A	2.488e^-4	0.683	UPSTREAM CR45435 INTERGENIC
2R	19553962	2R_19553962_SNP [dm3] 2R_23666439_SNP [dm6]	G	A	2.489e^-4	0.683	UPSTREAM Pde8 INTRON Pde8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	5651981	X_5651981_SNP [dm3] X_5757948_SNP [dm6]	C	T	2.495e^-4	0.683	SYNONYMOUS_CODING CG15771 START_GAINED CG15771 UTR_5_PRIME CG15771	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17455391	3L_17455391_SNP [dm3] 3L_17462291_SNP [dm6]	C	T	2.496e^-4	0.683	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3143873	3L_3143873_SNP [dm3] 3L_3143873_SNP [dm6]	T	A	2.516e^-4	0.687	UTR_5_PRIME CG1291 UPSTREAM CG11537	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	17217720	3L_17217720_SNP [dm3] 3L_17224620_SNP [dm6]	A	G	2.517e^-4	0.687	INTRON Rbp6
3R	8388326	3R_8388326_SNP [dm3] 3R_12562604_SNP [dm6]	C	T	2.543e^-4	0.69	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
X	6788786	X_6788786_SNP [dm3] X_6894753_SNP [dm6]	A	C	2.544e^-4	0.69	INTERGENIC
2R	10206215	2R_10206215_SNP [dm3] 2R_14318710_SNP [dm6]	T	C	2.546e^-4	0.69	INTRON Shroom
2L	1381522	2L_1381522_SNP [dm3] 2L_1381522_SNP [dm6]	T	C	2.548e^-4	0.69	SYNONYMOUS_CODING lea UTR_3_PRIME lea UPSTREAM CR44898 EXON CR44897	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	17894354	2R_17894354_SNP [dm3] 2R_22006849_SNP [dm6]	A	G	2.548e^-4	0.69	INTRON CG34370
X	18454882	X_18454882_SNP [dm3] X_18560849_SNP [dm6]	G	A	2.564e^-4	0.691	INTRON Bx
X	21292976	X_21292976_SNP [dm3] X_21421949_SNP [dm6]	A	G	2.566e^-4	0.691	DOWNSTREAM CG42343 INTERGENIC	TF binding site mE1_TFBS_cnc
X	15413680	X_15413680_SNP [dm3] X_15519647_SNP [dm6]	A	G	2.570e^-4	0.691	INTRON Ac13E
3L	22232878	3L_22232878_SNP [dm3] 3L_22239778_SNP [dm6]	C	T	2.571e^-4	0.691	INTRON olf413	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21896969	2L_21896969_SNP [dm3] 2L_21896969_SNP [dm6]	A	C	2.573e^-4	0.691	SYNONYMOUS_CODING CG11629	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7755171	2R_7755171_SNP [dm3] 2R_11867666_SNP [dm6]	A	G	2.575e^-4	0.691	DOWNSTREAM CG13185 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2L	4287700	2L_4287700_SNP [dm3] 2L_4287700_SNP [dm6]	G	C	2.576e^-4	0.691	INTRON tutl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	20187557	3L_20187557_DEL [dm3] 3L_20194457_DEL [dm6]	CAC	C	2.583e^-4	0.692	INTRON CG42674
2L	7002231	2L_7002231_SNP [dm3] 2L_7002231_SNP [dm6]	G	A	2.590e^-4	0.692	INTRON uif
X	10438077	X_10438077_SNP [dm3] X_10544044_SNP [dm6]	A	T	2.592e^-4	0.692	INTRON spri
2R	19513588	2R_19513588_SNP [dm3] 2R_23626065_SNP [dm6]	G	A	2.599e^-4	0.693	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	892036	X_892036_SNP [dm3] X_998003_SNP [dm6]	T	A	2.609e^-4	0.694	INTERGENIC
3R	10437640	3R_10437640_SNP [dm3] 3R_14611918_SNP [dm6]	A	T	2.616e^-4	0.694	INTRON CG14853
2R	6964734	2R_6964734_SNP [dm3] 2R_11077229_SNP [dm6]	G	A	2.619e^-4	0.694	INTRON luna	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1072752	2L_1072752_SNP [dm3] 2L_1072752_SNP [dm6]	G	T	2.624e^-4	0.694	INTRON S
3R	26618541	3R_26618541_SNP [dm3] 3R_30792819_SNP [dm6]	A	G	2.643e^-4	0.694	SYNONYMOUS_CODING wts	TF binding site mE1_TFBS_chinmo
2R	11278234	2R_11278234_SNP [dm3] 2R_15390729_SNP [dm6]	C	G	2.649e^-4	0.694	INTERGENIC
3L	9555349	3L_9555349_SNP [dm3] 3L_9562249_SNP [dm6]	A	G	2.654e^-4	0.694	INTRON CG42673
3R	17319697	3R_17319697_SNP [dm3] 3R_21493975_SNP [dm6]	G	T	2.657e^-4	0.694	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11018065	3L_11018065_SNP [dm3] 3L_11024965_SNP [dm6]	A	G	2.662e^-4	0.694	UPSTREAM CG32079 DOWNSTREAM Fad2 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	9306338	3R_9306338_SNP [dm3] 3R_13480616_SNP [dm6]	T	A	2.666e^-4	0.694	INTERGENIC
X	20218600	X_20218600_SNP [dm3] X_20347573_SNP [dm6]	T	A	2.671e^-4	0.694	INTERGENIC
X	7615074	X_7615074_DEL [dm3] X_7721041_DEL [dm6]	TT	T	2.678e^-4	0.694	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5395543	2R_5395543_SNP [dm3] 2R_9508038_SNP [dm6]	C	T	2.680e^-4	0.694	UTR_5_PRIME brp INTRON brp	TF binding site mE1_TFBS_Trl
2R	18282632	2R_18282632_SNP [dm3] 2R_22395127_SNP [dm6]	T	A	2.680e^-4	0.694	INTRON babos
2L	9444255	2L_9444255_SNP [dm3] 2L_9444255_SNP [dm6]	G	T	2.685e^-4	0.694	INTRON numb
3L	743058	3L_743058_SNP [dm3] 3L_743058_SNP [dm6]	T	A	2.690e^-4	0.694	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	16239646	2L_16239646_SNP [dm3] 2L_16239646_SNP [dm6]	T	C	2.691e^-4	0.694	INTRON CG42817
3L	5650459	3L_5650459_SNP [dm3] 3L_5657359_SNP [dm6]	C	G	2.694e^-4	0.694	UTR_3_PRIME lin-28 UPSTREAM sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14271088	2R_14271088_DEL [dm3] 2R_18383583_DEL [dm6]	TAT	T	2.696e^-4	0.694	UPSTREAM IM1 & 2 others INTERGENIC
3L	22200488	3L_22200488_INS [dm3] 3L_22207388_INS [dm6]	T	TT	2.700e^-4	0.694	INTRON olf413
3R	4340520	3R_4340520_SNP [dm3] 3R_8514798_SNP [dm6]	T	A	2.700e^-4	0.694	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	23339779	3R_23339779_SNP [dm3] 3R_27514057_SNP [dm6]	A	G	2.714e^-4	0.694	INTERGENIC
3L	7275931	3L_7275931_SNP [dm3] 3L_7282831_SNP [dm6]	C	T	2.723e^-4	0.694	INTRON unc-13-4A
3R	6105638	3R_6105638_DEL [dm3] 3R_10279916_DEL [dm6]	ATGACTCCA	A	2.725e^-4	0.694	INTRON CG43143
3R	22782220	3R_22782220_SNP [dm3] 3R_26956498_SNP [dm6]	G	A	2.735e^-4	0.694	INTRON CG6330	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2L	19715501	2L_19715501_SNP [dm3] 2L_19715501_SNP [dm6]	C	T	2.739e^-4	0.694	INTRON Lar	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3R	13599046	3R_13599046_SNP [dm3] 3R_17773324_SNP [dm6]	G	A	2.743e^-4	0.694	SYNONYMOUS_CODING CG43102
2L	9052774	2L_9052774_SNP [dm3] 2L_9052774_SNP [dm6]	G	T	2.747e^-4	0.694	UTR_3_PRIME CG31708
3L	14486927	3L_14486927_SNP [dm3] 3L_14493827_SNP [dm6]	G	C	2.756e^-4	0.694	INTRON bbg
3R	15767069	3R_15767069_SNP [dm3] 3R_19941347_SNP [dm6]	G	A	2.756e^-4	0.694	INTRON Hs6st
2R	6951579	2R_6951579_SNP [dm3] 2R_11064074_SNP [dm6]	A	G	2.759e^-4	0.694	INTRON luna	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	11321086	X_11321086_SNP [dm3] X_11427053_SNP [dm6]	T	C	2.759e^-4	0.694	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4933597	2L_4933597_SNP [dm3] 2L_4933597_SNP [dm6]	T	C	2.760e^-4	0.694	SYNONYMOUS_CODING hoe2
X	8628993	X_8628993_SNP [dm3] X_8734960_SNP [dm6]	G	A	2.767e^-4	0.694	INTERGENIC
3L	743046	3L_743046_SNP [dm3] 3L_743046_SNP [dm6]	A	T	2.768e^-4	0.694	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	6451166	X_6451166_SNP [dm3] X_6557133_SNP [dm6]	C	T	2.774e^-4	0.694	SYNONYMOUS_CODING CG34417 INTRON CG34417
X	7622608	X_7622608_SNP [dm3] X_7728575_SNP [dm6]	G	C	2.776e^-4	0.694	UPSTREAM CG12155 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	18264761	X_18264761_SNP [dm3] X_18370728_SNP [dm6]	A	T	2.782e^-4	0.694	UPSTREAM CrebB & 1 other INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	15292459	3R_15292459_SNP [dm3] 3R_19466737_SNP [dm6]	A	C	2.783e^-4	0.694	INTRON Dys
3L	7010422	3L_7010422_SNP [dm3] 3L_7017322_SNP [dm6]	T	A	2.785e^-4	0.694	INTRON Mp
2L	16239404	2L_16239404_SNP [dm3] 2L_16239404_SNP [dm6]	C	T	2.796e^-4	0.694	SYNONYMOUS_CODING CG42817
X	17947646	X_17947646_INS [dm3] X_18053613_INS [dm6]	G	GTGTGTATG	2.799e^-4	0.694	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1103291	3L_1103291_SNP [dm3] 3L_1103291_SNP [dm6]	T	A	2.799e^-4	0.694	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	8138196	2R_8138196_SNP [dm3] 2R_12250691_SNP [dm6]	A	G	2.809e^-4	0.694	INTERGENIC
X	13137038	X_13137038_SNP [dm3] X_13243005_SNP [dm6]	A	G	2.820e^-4	0.694	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	2.824e^-4	0.694	EXON CR44950
2L	7206708	2L_7206708_SNP [dm3] 2L_7206708_SNP [dm6]	G	A	2.831e^-4	0.694	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784	TF binding site mE1_TFBS_sens
2L	3245320	2L_3245320_SNP [dm3] 2L_3245320_SNP [dm6]	T	C	2.831e^-4	0.694	INTERGENIC
X	7622632	X_7622632_SNP [dm3] X_7728599_SNP [dm6]	A	G	2.838e^-4	0.694	UPSTREAM CG12155 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3699344	3L_3699344_SNP [dm3] 3L_3699344_SNP [dm6]	A	G	2.841e^-4	0.694	INTERGENIC
3R	14394850	3R_14394850_SNP [dm3] 3R_18569128_SNP [dm6]	C	A	2.847e^-4	0.694	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5557577	2L_5557577_SNP [dm3] 2L_5557577_SNP [dm6]	A	T	2.847e^-4	0.694	SPLICE_SITE_REGION GluRIIA INTRON GluRIIA
2L	5136849	2L_5136849_SNP [dm3] 2L_5136849_SNP [dm6]	T	C	2.850e^-4	0.694	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	8696998	2L_8696998_SNP [dm3] 2L_8696998_SNP [dm6]	C	G	2.853e^-4	0.694	INTRON Hnf4	TF binding site mE1_TFBS_cnc
X	2552057	X_2552057_SNP [dm3] X_2658024_SNP [dm6]	G	T	2.854e^-4	0.694	UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11276715	3L_11276715_SNP [dm3] 3L_11283615_SNP [dm6]	A	C	2.854e^-4	0.694	INTERGENIC
3L	11276725	3L_11276725_SNP [dm3] 3L_11283625_SNP [dm6]	A	T	2.854e^-4	0.694	INTERGENIC
2R	12110153	2R_12110153_SNP [dm3] 2R_16222648_SNP [dm6]	T	A	2.855e^-4	0.694	UPSTREAM mrj & 1 other DOWNSTREAM CG15706 EXON CR43898
3R	22412103	3R_22412103_SNP [dm3] 3R_26586381_SNP [dm6]	C	T	2.855e^-4	0.694	SYNONYMOUS_CODING scrib INTRON scrib	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5413523	2L_5413523_SNP [dm3] 2L_5413523_SNP [dm6]	A	G	2.857e^-4	0.694	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2645026	3L_2645026_SNP [dm3] 3L_2645026_SNP [dm6]	T	A	2.857e^-4	0.694	UPSTREAM CG1143 INTERGENIC
3L	7721230	3L_7721230_SNP [dm3] 3L_7728130_SNP [dm6]	G	A	2.859e^-4	0.694	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_HSA
3R	14695537	3R_14695537_SNP [dm3] 3R_18869815_SNP [dm6]	C	T	2.859e^-4	0.694	INTERGENIC
X	11945085	X_11945085_SNP [dm3] X_12051052_SNP [dm6]	A	T	2.860e^-4	0.694	INTRON CR43960 & 1 other
2L	17302634	2L_17302634_SNP [dm3] 2L_17302634_SNP [dm6]	A	G	2.865e^-4	0.694	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14749130	2L_14749130_SNP [dm3] 2L_14749130_SNP [dm6]	G	A	2.868e^-4	0.694	INTERGENIC
X	16154167	X_16154167_SNP [dm3] X_16260134_SNP [dm6]	T	A	2.870e^-4	0.694	INTERGENIC
3L	11843819	3L_11843819_SNP [dm3] 3L_11850719_SNP [dm6]	A	C	2.873e^-4	0.694	UTR_3_PRIME CG44837
X	8156039	X_8156039_SNP [dm3] X_8262006_SNP [dm6]	A	T	2.876e^-4	0.694	INTRON CG1632
2L	21906528	2L_21906528_SNP [dm3] 2L_21906528_SNP [dm6]	A	G	2.881e^-4	0.694	NON_SYNONYMOUS_CODING CG1428	TF binding site mE1_TFBS_cad
2R	10821667	2R_10821667_DEL [dm3] 2R_14934162_DEL [dm6]	ATGATACACGCTTATTA...	A	2.885e^-4	0.694	UPSTREAM CG10253 DOWNSTREAM CG12853 INTRON CG10253	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	15292564	3R_15292564_SNP [dm3] 3R_19466842_SNP [dm6]	T	C	2.893e^-4	0.694	INTRON Dys
3R	10428058	3R_10428058_SNP [dm3] 3R_14602336_SNP [dm6]	C	T	2.895e^-4	0.694	INTRON stumps	TF binding site mE1_TFBS_HSA
X	11320962	X_11320962_DEL [dm3] X_11426929_DEL [dm6]	TAA	T	2.898e^-4	0.694	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11320993	X_11320993_SNP [dm3] X_11426960_SNP [dm6]	G	A	2.908e^-4	0.694	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25036733	3R_25036733_SNP [dm3] 3R_29211011_SNP [dm6]	C	G	2.910e^-4	0.694	INTERGENIC
3L	15610573	3L_15610573_SNP [dm3] 3L_15617473_SNP [dm6]	G	A	2.917e^-4	0.694	INTRON comm3
3L	15610581	3L_15610581_DEL [dm3] 3L_15617481_DEL [dm6]	GGCC	TT	2.917e^-4	0.694	INTRON comm3
3L	15610600	3L_15610600_SNP [dm3] 3L_15617500_SNP [dm6]	A	C	2.917e^-4	0.694	INTRON comm3
X	7622137	X_7622137_SNP [dm3] X_7728104_SNP [dm6]	A	T	2.919e^-4	0.694	UPSTREAM CG12155 INTRON NELF-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	15488966	3L_15488966_SNP [dm3] 3L_15495866_SNP [dm6]	G	T	2.920e^-4	0.694	UPSTREAM CG12355 & 1 other INTERGENIC
2L	10052775	2L_10052775_INS [dm3] 2L_10052775_INS [dm6]	T	TCTAT	2.920e^-4	0.694	UPSTREAM CR44875 DOWNSTREAM CR44874 INTERGENIC
3R	19283761	3R_19283761_SNP [dm3] 3R_23458039_SNP [dm6]	A	T	2.921e^-4	0.694	INTRON CG4374
2L	13876154	2L_13876154_SNP [dm3] 2L_13876154_SNP [dm6]	G	A	2.925e^-4	0.694	INTRON CenG1A
2R	13555652	2R_13555652_SNP [dm3] 2R_17668147_SNP [dm6]	C	A	2.930e^-4	0.694	SYNONYMOUS_CODING eIF3-S8	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	712066	3L_712066_SNP [dm3] 3L_712066_SNP [dm6]	G	A	2.933e^-4	0.694	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	13645470	2R_13645470_SNP [dm3] 2R_17757965_SNP [dm6]	C	A	2.937e^-4	0.694	INTRON HLH54F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16837257	2R_16837257_SNP [dm3] 2R_20949752_SNP [dm6]	C	T	2.938e^-4	0.694	UPSTREAM CG33704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	10436798	3R_10436798_SNP [dm3] 3R_14611076_SNP [dm6]	T	C	2.939e^-4	0.694	INTRON CG14853
3R	9817342	3R_9817342_INS [dm3] 3R_13991620_INS [dm6]	C	CCATG	2.941e^-4	0.694	INTRON rdx
3R	9817346	3R_9817346_INS [dm3] 3R_13991624_INS [dm6]	T	TGATT	2.941e^-4	0.694	INTRON rdx
3R	18844446	3R_18844446_SNP [dm3] 3R_23018724_SNP [dm6]	T	G	2.944e^-4	0.694	INTERGENIC
2L	16239657	2L_16239657_SNP [dm3] 2L_16239657_SNP [dm6]	C	T	2.945e^-4	0.694	INTRON CG42817
3R	4934322	3R_4934322_SNP [dm3] 3R_9108600_SNP [dm6]	C	T	2.951e^-4	0.694	INTRON pum
2L	3245318	2L_3245318_SNP [dm3] 2L_3245318_SNP [dm6]	A	T	2.961e^-4	0.695	INTERGENIC
2L	4933968	2L_4933968_SNP [dm3] 2L_4933968_SNP [dm6]	G	A	2.962e^-4	0.695	INTRON hoe2
2L	4147037	2L_4147037_SNP [dm3] 2L_4147037_SNP [dm6]	A	T	2.970e^-4	0.696	INTERGENIC
3R	21655013	3R_21655013_SNP [dm3] 3R_25829291_SNP [dm6]	C	G	2.977e^-4	0.696	DOWNSTREAM Mst57Dc & 1 other INTERGENIC
3L	11789578	3L_11789578_SNP [dm3] 3L_11796478_SNP [dm6]	G	A	2.980e^-4	0.696	SYNONYMOUS_CODING Klp68D	TF binding site mE1_TFBS_sens
3L	14489373	3L_14489373_SNP [dm3] 3L_14496273_SNP [dm6]	C	T	2.986e^-4	0.696	INTRON bbg	TF binding site mE1_TFBS_cad
X	13137037	X_13137037_SNP [dm3] X_13243004_SNP [dm6]	C	T	2.990e^-4	0.696	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	12663420	X_12663420_SNP [dm3] X_12769387_SNP [dm6]	T	C	2.990e^-4	0.696	INTRON CG3812	TF binding site BDTNP1_TFBS_twi
X	12850971	X_12850971_SNP [dm3] X_12956938_SNP [dm6]	G	T	2.998e^-4	0.696	INTRON hec
2L	5496684	2L_5496684_SNP [dm3] 2L_5496684_SNP [dm6]	A	G	3.001e^-4	0.696	INTERGENIC
3L	4840793	3L_4840793_SNP [dm3] 3L_4840793_SNP [dm6]	T	G	3.002e^-4	0.696	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	11168350	3L_11168350_SNP [dm3] 3L_11175250_SNP [dm6]	C	T	3.014e^-4	0.697	INTRON CG14142	TF binding site mE1_TFBS_cad
3L	7072423	3L_7072423_SNP [dm3] 3L_7079323_SNP [dm6]	C	A	3.021e^-4	0.697	INTERGENIC
2L	13875526	2L_13875526_SNP [dm3] 2L_13875526_SNP [dm6]	C	T	3.022e^-4	0.697	INTRON CenG1A
3L	9512513	3L_9512513_SNP [dm3] 3L_9519413_SNP [dm6]	C	G	3.029e^-4	0.697	INTRON CG33700
2R	18817694	2R_18817694_SNP [dm3] 2R_22930171_SNP [dm6]	A	G	3.030e^-4	0.697	DOWNSTREAM CG42678 INTRON CG42678	TF binding site mE1_TFBS_inv
3L	19516540	3L_19516540_SNP [dm3] 3L_19523440_SNP [dm6]	G	A	3.036e^-4	0.697	INTRON Cpr76Bc
2L	638038	2L_638038_SNP [dm3] 2L_638038_SNP [dm6]	G	C	3.039e^-4	0.697	INTERGENIC
3R	12898355	3R_12898355_SNP [dm3] 3R_17072633_SNP [dm6]	A	G	3.040e^-4	0.697	UTR_5_PRIME Ns1 UPSTREAM mRpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18261995	X_18261995_SNP [dm3] X_18367962_SNP [dm6]	C	T	3.040e^-4	0.697	INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	17725920	2R_17725920_SNP [dm3] 2R_21838415_SNP [dm6]	C	T	3.045e^-4	0.697	SYNONYMOUS_CODING CG4372
2L	6463898	2L_6463898_SNP [dm3] 2L_6463898_SNP [dm6]	A	T	3.047e^-4	0.697	UTR_5_PRIME CG16947	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	6105675	3R_6105675_SNP [dm3] 3R_10279953_SNP [dm6]	T	A	3.054e^-4	0.697	INTRON CG43143
3L	9483258	3L_9483258_INS [dm3] 3L_9490158_INS [dm6]	T	TTATAGCGTT	3.054e^-4	0.697	UTR_3_PRIME CG32037 UPSTREAM CG32036	TF binding site mE1_TFBS_cad
3L	3532941	3L_3532941_SNP [dm3] 3L_3532941_SNP [dm6]	T	C	3.057e^-4	0.697	INTRON Eip63E
3L	15757612	3L_15757612_SNP [dm3] 3L_15764512_SNP [dm6]	G	T	3.063e^-4	0.697	INTERGENIC
3R	25727862	3R_25727862_SNP [dm3] 3R_29902140_SNP [dm6]	G	T	3.067e^-4	0.697	INTRON CG31038
X	7611768	X_7611768_SNP [dm3] X_7717735_SNP [dm6]	G	C	3.071e^-4	0.697	INTRON CG15478
2R	10821719	2R_10821719_SNP [dm3] 2R_14934214_SNP [dm6]	C	A	3.072e^-4	0.697	UPSTREAM CG10253 DOWNSTREAM CG12853 INTRON CG10253	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	16823020	3L_16823020_DEL [dm3] 3L_16829920_DEL [dm6]	TGCAGTTTTGCAAT...	T	3.077e^-4	0.697	UPSTREAM CG13024 INTERGENIC
X	7619055	X_7619055_SNP [dm3] X_7725022_SNP [dm6]	G	C	3.080e^-4	0.697	NON_SYNONYMOUS_CODING Hira DOWNSTREAM NELF-B
3L	14487853	3L_14487853_SNP [dm3] 3L_14494753_SNP [dm6]	G	C	3.100e^-4	0.699	INTRON bbg
3L	794541	3L_794541_SNP [dm3] 3L_794541_SNP [dm6]	C	G	3.101e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19480177	2L_19480177_SNP [dm3] 2L_19480177_SNP [dm6]	A	G	3.106e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	20946369	2R_20946369_SNP [dm3] 2R_25058846_SNP [dm6]	C	T	3.117e^-4	0.699	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3R	18780272	3R_18780272_SNP [dm3] 3R_22954550_SNP [dm6]	A	G	3.126e^-4	0.699	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	14560642	3L_14560642_SNP [dm3] 3L_14567542_SNP [dm6]	C	A	3.129e^-4	0.699	INTRON CG42758
2R	16325368	2R_16325368_SNP [dm3] 2R_20437863_SNP [dm6]	C	A	3.136e^-4	0.699	INTRON CG12484
3R	15292424	3R_15292424_SNP [dm3] 3R_19466702_SNP [dm6]	T	G	3.140e^-4	0.699	INTRON Dys
2L	19896738	2L_19896738_SNP [dm3] 2L_19896738_SNP [dm6]	T	A	3.145e^-4	0.699	INTRON sick
3L	14556612	3L_14556612_SNP [dm3] 3L_14563512_SNP [dm6]	A	G	3.145e^-4	0.699	DOWNSTREAM CG34039 INTERGENIC	TF binding site mE1_TFBS_Kr
3R	12970762	3R_12970762_SNP [dm3] 3R_17145040_SNP [dm6]	A	T	3.149e^-4	0.699	UTR_3_PRIME m-cup DOWNSTREAM m-cup
3L	7721688	3L_7721688_SNP [dm3] 3L_7728588_SNP [dm6]	A	G	3.152e^-4	0.699	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
2L	8807137	2L_8807137_SNP [dm3] 2L_8807137_SNP [dm6]	T	C	3.153e^-4	0.699	INTERGENIC
3L	741724	3L_741724_INS [dm3] 3L_741724_INS [dm6]	C	CGC	3.157e^-4	0.699	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	18542217	2R_18542217_SNP [dm3] 2R_22654712_SNP [dm6]	T	G	3.167e^-4	0.699	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG30196 & 2 others INTERGENIC	TF binding site mE1_TFBS_cad
3R	16003528	3R_16003528_SNP [dm3] 3R_20177806_SNP [dm6]	G	A	3.168e^-4	0.699	INTERGENIC
3L	9510193	3L_9510193_SNP [dm3] 3L_9517093_SNP [dm6]	C	A	3.169e^-4	0.699	INTRON CG33700
3R	11783799	3R_11783799_SNP [dm3] 3R_15958077_SNP [dm6]	C	A	3.173e^-4	0.699	INTRON Sap47
3L	12568589	3L_12568589_SNP [dm3] 3L_12575489_SNP [dm6]	G	T	3.176e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4328709	2L_4328709_SNP [dm3] 2L_4328709_SNP [dm6]	T	G	3.177e^-4	0.699	INTRON CG16857	TF binding site mE1_TFBS_chinmo
2L	17289532	2L_17289532_SNP [dm3] 2L_17289532_SNP [dm6]	A	C	3.178e^-4	0.699	INTERGENIC
3R	19435034	3R_19435034_SNP [dm3] 3R_23609312_SNP [dm6]	C	G	3.181e^-4	0.699	INTRON CG31145
3R	2868311	3R_2868311_INS [dm3] 3R_7042589_INS [dm6]	C	CGGA	3.182e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	5742546	X_5742546_SNP [dm3] X_5848513_SNP [dm6]	T	C	3.186e^-4	0.699	INTERGENIC
3R	6105689	3R_6105689_SNP [dm3] 3R_10279967_SNP [dm6]	G	A	3.188e^-4	0.699	INTRON CG43143
3L	8681804	3L_8681804_SNP [dm3] 3L_8688704_SNP [dm6]	A	C	3.200e^-4	0.699	INTERGENIC
2L	5559719	2L_5559719_SNP [dm3] 2L_5559719_SNP [dm6]	T	C	3.210e^-4	0.699	SYNONYMOUS_CODING GluRIIB DOWNSTREAM GluRIIA	TF binding site mE1_TFBS_inv
3L	677254	3L_677254_SNP [dm3] 3L_677254_SNP [dm6]	T	A	3.214e^-4	0.699	DOWNSTREAM CG17129 INTERGENIC
2R	12456090	2R_12456090_SNP [dm3] 2R_16568585_SNP [dm6]	G	A	3.216e^-4	0.699	SYNONYMOUS_CODING CG4945	TF binding site mE1_TFBS_cad
3L	1108398	3L_1108398_SNP [dm3] 3L_1108398_SNP [dm6]	A	G	3.217e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9585926	3R_9585926_SNP [dm3] 3R_13760204_SNP [dm6]	A	G	3.217e^-4	0.699	INTRON CG34383
3L	17672226	3L_17672226_SNP [dm3] 3L_17679126_SNP [dm6]	C	A	3.222e^-4	0.699	INTRON CG34251
3L	1108368	3L_1108368_SNP [dm3] 3L_1108368_SNP [dm6]	T	C	3.223e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10756244	3L_10756244_SNP [dm3] 3L_10763144_SNP [dm6]	A	G	3.224e^-4	0.699	INTERGENIC
3L	11777189	3L_11777189_SNP [dm3] 3L_11784089_SNP [dm6]	A	G	3.238e^-4	0.699	SYNONYMOUS_CODING Pi3K68D
2R	14050808	2R_14050808_SNP [dm3] 2R_18163303_SNP [dm6]	C	T	3.241e^-4	0.699	SYNONYMOUS_CODING CG10915	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8633311	X_8633311_SNP [dm3] X_8739278_SNP [dm6]	A	G	3.244e^-4	0.699	INTERGENIC
2L	5557570	2L_5557570_SNP [dm3] 2L_5557570_SNP [dm6]	T	A	3.259e^-4	0.699	INTRON GluRIIA
3L	20176231	3L_20176231_SNP [dm3] 3L_20183131_SNP [dm6]	T	A	3.263e^-4	0.699	INTRON CG42674	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3103926	3L_3103926_SNP [dm3] 3L_3103926_SNP [dm6]	C	T	3.265e^-4	0.699	INTRON Cht7
3L	8532579	3L_8532579_SNP [dm3] 3L_8539479_SNP [dm6]	T	A	3.272e^-4	0.699	INTERGENIC
X	18264650	X_18264650_SNP [dm3] X_18370617_SNP [dm6]	A	T	3.289e^-4	0.699	UPSTREAM CrebB & 1 other INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	3104455	3L_3104455_MNP [dm3] 3L_3104455_MNP [dm6]	CGC	TCA	3.292e^-4	0.699	INTRON Cht7
2L	795404	2L_795404_SNP [dm3] 2L_795404_SNP [dm6]	T	G	3.297e^-4	0.699	INTERGENIC
2L	939164	2L_939164_SNP [dm3] 2L_939164_SNP [dm6]	T	C	3.304e^-4	0.699	INTRON CG4341	TF binding site mE1_TFBS_chinmo
2R	4951152	2R_4951152_SNP [dm3] 2R_9063647_SNP [dm6]	T	G	3.305e^-4	0.699	INTRON ana	regulatory region REDfly_CRMs
2R	17774715	2R_17774715_SNP [dm3] 2R_21887210_SNP [dm6]	C	T	3.308e^-4	0.699	INTRON Fili
3L	18542911	3L_18542911_SNP [dm3] 3L_18549811_SNP [dm6]	C	A	3.310e^-4	0.699	INTERGENIC
3L	20821277	3L_20821277_SNP [dm3] 3L_20828177_SNP [dm6]	C	T	3.320e^-4	0.699	UTR_5_PRIME Pka-R1 UPSTREAM Pka-R1 INTRON Pka-R1
3R	17347161	3R_17347161_SNP [dm3] 3R_21521439_SNP [dm6]	C	T	3.327e^-4	0.699	INTRON CG7956	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	7321697	3R_7321697_SNP [dm3] 3R_11495975_SNP [dm6]	C	T	3.328e^-4	0.699	INTERGENIC
3L	15637084	3L_15637084_SNP [dm3] 3L_15643984_SNP [dm6]	A	C	3.334e^-4	0.699	INTRON comm3
2L	4625346	2L_4625346_SNP [dm3] 2L_4625346_SNP [dm6]	T	C	3.334e^-4	0.699	INTERGENIC
X	7622142	X_7622142_INS [dm3] X_7728109_INS [dm6]	A	AA	3.340e^-4	0.699	UPSTREAM CG12155 INTRON NELF-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	4475044	X_4475044_SNP [dm3] X_4581011_SNP [dm6]	G	A	3.345e^-4	0.699	INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9425162	2L_9425162_SNP [dm3] 2L_9425162_SNP [dm6]	C	T	3.345e^-4	0.699	SYNONYMOUS_CODING Mco1
3R	23810709	3R_23810709_SNP [dm3] 3R_27984987_SNP [dm6]	T	C	3.346e^-4	0.699	INTRON betaTub97EF	insulator Insulator_Class_II.mE01
2R	5234075	2R_5234075_SNP [dm3] 2R_9346570_SNP [dm6]	T	G	3.355e^-4	0.699	SYNONYMOUS_CODING Or45a INTRON CG13954 & 1 other	TF binding site mE1_TFBS_chinmo
2L	9338417	2L_9338417_SNP [dm3] 2L_9338417_SNP [dm6]	T	C	3.364e^-4	0.699	INTRON Eaat1
3R	27136665	3R_27136665_SNP [dm3] 3R_31310943_SNP [dm6]	G	A	3.365e^-4	0.699	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	11309234	X_11309234_SNP [dm3] X_11415201_SNP [dm6]	C	T	3.368e^-4	0.699	SYNONYMOUS_CODING Gr10a DOWNSTREAM Or10a	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	16890622	3R_16890622_SNP [dm3] 3R_21064900_SNP [dm6]	G	A	3.369e^-4	0.699	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
2R	3080414	2R_3080414_SNP [dm3] 2R_7192909_SNP [dm6]	C	A	3.379e^-4	0.699	UTR_5_PRIME pk INTRON pk	TF binding site mE1_TFBS_cad
3L	10606729	3L_10606729_SNP [dm3] 3L_10613629_SNP [dm6]	T	C	3.396e^-4	0.699	INTERGENIC
3R	22141235	3R_22141235_SNP [dm3] 3R_26315513_SNP [dm6]	G	A	3.418e^-4	0.699	INTERGENIC
3R	9823760	3R_9823760_SNP [dm3] 3R_13998038_SNP [dm6]	T	C	3.418e^-4	0.699	INTRON rdx	TF binding site mE1_TFBS_HSA
3L	798006	3L_798006_SNP [dm3] 3L_798006_SNP [dm6]	G	A	3.418e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	5773914	2L_5773914_DEL [dm3] 2L_5773914_DEL [dm6]	ATTGCC	A	3.427e^-4	0.699	UPSTREAM CG9171 INTRON CG9171	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16436597	2R_16436597_SNP [dm3] 2R_20549092_SNP [dm6]	C	T	3.428e^-4	0.699	NON_SYNONYMOUS_CODING Obp57d UTR_3_PRIME Cpr57A UPSTREAM Obp57e DOWNSTREAM Cpr57A	regulatory region REDfly_CRMs
3L	1100217	3L_1100217_SNP [dm3] 3L_1100217_SNP [dm6]	G	A	3.429e^-4	0.699	SYNONYMOUS_CODING bab1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	17464562	3L_17464562_INS [dm3] 3L_17471462_INS [dm6]	A	AGGTGCAGAAGGTAACGGAC...	3.429e^-4	0.699	INTRON CG7589
3L	12435444	3L_12435444_SNP [dm3] 3L_12442344_SNP [dm6]	C	A	3.430e^-4	0.699	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19317545	2R_19317545_SNP [dm3] 2R_23430022_SNP [dm6]	G	T	3.434e^-4	0.699	INTRON CG9815
3L	20901759	3L_20901759_SNP [dm3] 3L_20908659_SNP [dm6]	T	C	3.437e^-4	0.699	INTERGENIC
2L	19816601	2L_19816601_SNP [dm3] 2L_19816601_SNP [dm6]	G	T	3.438e^-4	0.699	UPSTREAM snRNA:U2:38ABa DOWNSTREAM snRNA:U5:38ABb INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	4944897	2R_4944897_SNP [dm3] 2R_9057392_SNP [dm6]	C	A	3.438e^-4	0.699	INTRON CG13743
2R	18475339	2R_18475339_SNP [dm3] 2R_22587834_SNP [dm6]	A	C	3.441e^-4	0.699	INTRON dnr1
2R	18475340	2R_18475340_SNP [dm3] 2R_22587835_SNP [dm6]	G	A	3.441e^-4	0.699	INTRON dnr1
2R	10096977	2R_10096977_SNP [dm3] 2R_14209472_SNP [dm6]	C	T	3.447e^-4	0.699	INTRON Sox15	regulatory region REDfly_CRMs
3L	11276693	3L_11276693_SNP [dm3] 3L_11283593_SNP [dm6]	A	G	3.452e^-4	0.699	INTERGENIC
2L	18487687	2L_18487687_SNP [dm3] 2L_18487687_SNP [dm6]	A	T	3.453e^-4	0.699	UTR_3_PRIME CG10176 DOWNSTREAM kon	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
3R	2868309	3R_2868309_SNP [dm3] 3R_7042587_SNP [dm6]	G	A	3.457e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	5557581	2L_5557581_SNP [dm3] 2L_5557581_SNP [dm6]	A	G	3.462e^-4	0.699	SPLICE_SITE_REGION GluRIIA SYNONYMOUS_CODING GluRIIA
3L	4766893	3L_4766893_SNP [dm3] 3L_4766893_SNP [dm6]	C	A	3.465e^-4	0.699	SYNONYMOUS_CODING RhoGEF64C	TF binding site mE1_TFBS_chinmo
X	7613947	X_7613947_SNP [dm3] X_7719914_SNP [dm6]	C	T	3.468e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15901302	2R_15901302_SNP [dm3] 2R_20013797_SNP [dm6]	T	A	3.471e^-4	0.699	UPSTREAM CR44629 INTERGENIC
3L	5122899	3L_5122899_SNP [dm3] 3L_5129799_SNP [dm6]	T	A	3.476e^-4	0.699	SYNONYMOUS_CODING CG4597
3L	11276731	3L_11276731_SNP [dm3] 3L_11283631_SNP [dm6]	A	G	3.478e^-4	0.699	INTERGENIC
X	5897074	X_5897074_SNP [dm3] X_6003041_SNP [dm6]	T	C	3.483e^-4	0.699	INTRON CR44498
2L	15090500	2L_15090500_SNP [dm3] 2L_15090500_SNP [dm6]	T	A	3.485e^-4	0.699	INTRON CG15270
3L	10897685	3L_10897685_SNP [dm3] 3L_10904585_SNP [dm6]	C	T	3.488e^-4	0.699	INTERGENIC
2L	17308165	2L_17308165_SNP [dm3] 2L_17308165_SNP [dm6]	A	G	3.490e^-4	0.699	INTERGENIC
3R	16890626	3R_16890626_SNP [dm3] 3R_21064904_SNP [dm6]	A	T	3.492e^-4	0.699	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3R	25287731	3R_25287731_DEL [dm3] 3R_29462009_DEL [dm6]	CACACAC	C	3.493e^-4	0.699	UTR_5_PRIME Ptp99A INTRON Ptp99A	TF binding site BDTNP1_TFBS_twi
3R	10574955	3R_10574955_SNP [dm3] 3R_14749233_SNP [dm6]	T	C	3.502e^-4	0.699	UPSTREAM jvl & 1 other INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	9817323	3R_9817323_SNP [dm3] 3R_13991601_SNP [dm6]	T	A	3.504e^-4	0.699	INTRON rdx
X	20493645	X_20493645_SNP [dm3] X_20622618_SNP [dm6]	C	T	3.507e^-4	0.699	INTRON RunxA
3L	8681778	3L_8681778_SNP [dm3] 3L_8688678_SNP [dm6]	A	C	3.514e^-4	0.699	INTERGENIC
3R	2772237	3R_2772237_SNP [dm3] 3R_6946515_SNP [dm6]	G	A	3.522e^-4	0.699	INTRON Antp	TF binding site mE1_TFBS_cad
3R	7278942	3R_7278942_SNP [dm3] 3R_11453220_SNP [dm6]	A	G	3.530e^-4	0.699	SYNONYMOUS_CODING PGRP-LB INTRON CG17230	TF binding site mE1_TFBS_chinmo
2L	4292764	2L_4292764_SNP [dm3] 2L_4292764_SNP [dm6]	T	C	3.532e^-4	0.699	INTRON tutl
2R	7902194	2R_7902194_SNP [dm3] 2R_12014689_SNP [dm6]	T	G	3.535e^-4	0.699	UPSTREAM CR44306 INTRON otk
3L	7461509	3L_7461509_SNP [dm3] 3L_7468409_SNP [dm6]	G	T	3.536e^-4	0.699	UTR_3_PRIME CG42660 & 2 others
2L	4278870	2L_4278870_SNP [dm3] 2L_4278870_SNP [dm6]	A	T	3.538e^-4	0.699	SYNONYMOUS_CODING Art2	TF binding site BDTNP1_TFBS_dl
2L	10525649	2L_10525649_SNP [dm3] 2L_10525649_SNP [dm6]	T	C	3.538e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9247087	2R_9247087_SNP [dm3] 2R_13359582_SNP [dm6]	A	G	3.549e^-4	0.699	INTERGENIC
3L	16442415	3L_16442415_SNP [dm3] 3L_16449315_SNP [dm6]	C	T	3.549e^-4	0.699	INTRON CG33158 & 1 other
3L	11789647	3L_11789647_SNP [dm3] 3L_11796547_SNP [dm6]	T	C	3.551e^-4	0.699	SYNONYMOUS_CODING Klp68D	TF binding site mE1_TFBS_sens
2L	3126389	2L_3126389_SNP [dm3] 2L_3126389_SNP [dm6]	C	T	3.560e^-4	0.699	NON_SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	9408682	3L_9408682_SNP [dm3] 3L_9415582_SNP [dm6]	T	C	3.562e^-4	0.699	DOWNSTREAM CG3982 INTRON CG3967
3R	16529875	3R_16529875_SNP [dm3] 3R_20704153_SNP [dm6]	G	T	3.571e^-4	0.699	INTRON Oamb	TF binding site mE1_TFBS_inv
3L	837843	3L_837843_SNP [dm3] 3L_837843_SNP [dm6]	C	T	3.574e^-4	0.699	UPSTREAM CG13887 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	14925736	3L_14925736_INS [dm3] 3L_14932636_INS [dm6]	T	CAGCGGAG	3.577e^-4	0.699	INTRON DCX-EMAP
3L	13487564	3L_13487564_SNP [dm3] 3L_13494464_SNP [dm6]	G	T	3.581e^-4	0.699	INTRON Tgi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	17460040	3L_17460040_INS [dm3] 3L_17466940_INS [dm6]	T	GG	3.583e^-4	0.699	DOWNSTREAM CG7603 INTERGENIC
2L	606389	2L_606389_SNP [dm3] 2L_606389_SNP [dm6]	C	T	3.587e^-4	0.699	EXON CR43648	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12264143	X_12264143_SNP [dm3] X_12370110_SNP [dm6]	C	A	3.588e^-4	0.699	INTERGENIC
2L	16947596	2L_16947596_SNP [dm3] 2L_16947596_SNP [dm6]	T	A	3.603e^-4	0.699	DOWNSTREAM CR44393 INTERGENIC
2R	11576437	2R_11576437_SNP [dm3] 2R_15688932_SNP [dm6]	T	C	3.603e^-4	0.699	NON_SYNONYMOUS_CODING Cep89 UPSTREAM CG30090	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	13739147	X_13739147_SNP [dm3] X_13845114_SNP [dm6]	A	G	3.627e^-4	0.699	INTRON AMPdeam	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu
2R	18817445	2R_18817445_SNP [dm3] 2R_22929922_SNP [dm6]	G	A	3.627e^-4	0.699	NON_SYNONYMOUS_CODING CG42678 UTR_3_PRIME CG42678 DOWNSTREAM CG42678
X	11320956	X_11320956_SNP [dm3] X_11426923_SNP [dm6]	T	A	3.634e^-4	0.699	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9426788	2L_9426788_SNP [dm3] 2L_9426788_SNP [dm6]	C	T	3.637e^-4	0.699	UTR_5_PRIME Fbp2 UPSTREAM Fbp2 DOWNSTREAM Mco1
2L	13211544	2L_13211544_SNP [dm3] 2L_13211544_SNP [dm6]	T	C	3.643e^-4	0.699	NON_SYNONYMOUS_CODING CG15482 DOWNSTREAM Pect & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7129120	3L_7129120_SNP [dm3] 3L_7136020_SNP [dm6]	A	G	3.647e^-4	0.699	INTRON melt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9831038	3L_9831038_SNP [dm3] 3L_9837938_SNP [dm6]	C	G	3.647e^-4	0.699	SYNONYMOUS_CODING Cdk8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19553891	2R_19553891_SNP [dm3] 2R_23666368_SNP [dm6]	C	T	3.657e^-4	0.699	UPSTREAM Pde8 INTRON Pde8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7721263	3L_7721263_SNP [dm3] 3L_7728163_SNP [dm6]	T	C	3.663e^-4	0.699	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14121064	X_14121064_SNP [dm3] X_14227031_SNP [dm6]	G	A	3.664e^-4	0.699	SYNONYMOUS_CODING mRpL38	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12068858	3L_12068858_SNP [dm3] 3L_12075758_SNP [dm6]	A	G	3.669e^-4	0.699	INTRON Sema-5c
3L	7470072	3L_7470072_SNP [dm3] 3L_7476972_SNP [dm6]	T	A	3.673e^-4	0.699	DOWNSTREAM CG43292 INTERGENIC
3R	26669113	3R_26669113_SNP [dm3] 3R_30843391_SNP [dm6]	A	T	3.675e^-4	0.699	INTERGENIC	TF binding site mE1_TFBS_cad
2R	19719350	2R_19719350_SNP [dm3] 2R_23831827_SNP [dm6]	T	G	3.677e^-4	0.699	INTRON CG5549
X	11121667	X_11121667_SNP [dm3] X_11227634_SNP [dm6]	T	C	3.680e^-4	0.699	INTRON CG44422
2L	8447066	2L_8447066_SNP [dm3] 2L_8447066_SNP [dm6]	C	G	3.681e^-4	0.699	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_inv
3L	1103327	3L_1103327_SNP [dm3] 3L_1103327_SNP [dm6]	G	T	3.682e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	6451169	X_6451169_SNP [dm3] X_6557136_SNP [dm6]	A	T	3.684e^-4	0.699	SYNONYMOUS_CODING CG34417 INTRON CG34417
2L	2914838	2L_2914838_SNP [dm3] 2L_2914838_SNP [dm6]	G	C	3.685e^-4	0.699	INTRON lilli
3R	23141757	3R_23141757_SNP [dm3] 3R_27316035_SNP [dm6]	T	A	3.692e^-4	0.699	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	2922161	2L_2922161_SNP [dm3] 2L_2922161_SNP [dm6]	T	A	3.694e^-4	0.699	INTRON lilli
2L	19817600	2L_19817600_SNP [dm3] 2L_19817600_SNP [dm6]	A	C	3.696e^-4	0.699	INTRON sick	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	14561076	3L_14561076_SNP [dm3] 3L_14567976_SNP [dm6]	T	C	3.698e^-4	0.699	SYNONYMOUS_CODING CG42758
3L	11789807	3L_11789807_SNP [dm3] 3L_11796707_SNP [dm6]	T	A	3.700e^-4	0.699	INTRON Klp68D
X	3035757	X_3035757_SNP [dm3] X_3141724_SNP [dm6]	A	T	3.701e^-4	0.699	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	13558499	2R_13558499_SNP [dm3] 2R_17670994_SNP [dm6]	A	C	3.707e^-4	0.699	UPSTREAM CR44404 DOWNSTREAM CG30108 & 2 others INTERGENIC
3L	10025546	3L_10025546_SNP [dm3] 3L_10032446_SNP [dm6]	C	T	3.714e^-4	0.699	INTRON dpr6
2L	13875541	2L_13875541_SNP [dm3] 2L_13875541_SNP [dm6]	C	G	3.714e^-4	0.699	INTRON CenG1A
3L	1103287	3L_1103287_MNP [dm3] 3L_1103287_MNP [dm6]	AAT	GGA	3.722e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	10294490	2R_10294490_SNP [dm3] 2R_14406985_SNP [dm6]	G	A	3.723e^-4	0.699	INTERGENIC
3R	18780293	3R_18780293_SNP [dm3] 3R_22954571_SNP [dm6]	G	C	3.723e^-4	0.699	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	1867630	2L_1867630_SNP [dm3] 2L_1867630_SNP [dm6]	T	A	3.724e^-4	0.699	INTRON CG31663
3L	15728441	3L_15728441_SNP [dm3] 3L_15735341_SNP [dm6]	C	T	3.727e^-4	0.699	INTERGENIC
2R	8137554	2R_8137554_SNP [dm3] 2R_12250049_SNP [dm6]	G	A	3.730e^-4	0.699	INTERGENIC
3L	2293707	3L_2293707_SNP [dm3] 3L_2293707_SNP [dm6]	C	T	3.731e^-4	0.699	INTRON MsR2
2R	5234047	2R_5234047_SNP [dm3] 2R_9346542_SNP [dm6]	G	C	3.738e^-4	0.699	INTRON CG13954 & 2 others	TF binding site mE1_TFBS_chinmo
2R	15896571	2R_15896571_SNP [dm3] 2R_20009066_SNP [dm6]	C	A	3.740e^-4	0.699	INTERGENIC
3R	16710155	3R_16710155_SNP [dm3] 3R_20884433_SNP [dm6]	A	G	3.745e^-4	0.699	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10897680	3L_10897680_SNP [dm3] 3L_10904580_SNP [dm6]	C	G	3.745e^-4	0.699	INTERGENIC
2R	17451450	2R_17451450_SNP [dm3] 2R_21563945_SNP [dm6]	G	C	3.751e^-4	0.699	INTRON CG10440
3L	14817116	3L_14817116_SNP [dm3] 3L_14824016_SNP [dm6]	A	T	3.753e^-4	0.699	INTRON CG17839
X	14157661	X_14157661_SNP [dm3] X_14263628_SNP [dm6]	C	T	3.759e^-4	0.699	SYNONYMOUS_CODING CG1461
3L	6059888	3L_6059888_SNP [dm3] 3L_6066788_SNP [dm6]	T	C	3.760e^-4	0.699	SYNONYMOUS_CODING CG42269	TF binding site mE1_TFBS_chinmo
3L	13953220	3L_13953220_SNP [dm3] 3L_13960120_SNP [dm6]	G	A	3.771e^-4	0.699	INTRON CG32137
3R	18480164	3R_18480164_SNP [dm3] 3R_22654442_SNP [dm6]	C	T	3.777e^-4	0.699	INTRON CG45058
X	7617570	X_7617570_SNP [dm3] X_7723537_SNP [dm6]	C	A	3.785e^-4	0.699	SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	7611767	X_7611767_SNP [dm3] X_7717734_SNP [dm6]	A	C	3.787e^-4	0.699	INTRON CG15478
X	17952280	X_17952280_SNP [dm3] X_18058247_SNP [dm6]	A	T	3.793e^-4	0.699	INTRON Sh
X	8156863	X_8156863_SNP [dm3] X_8262830_SNP [dm6]	T	C	3.794e^-4	0.699	INTRON CG1632	TF binding site BDTNP1_TFBS_da
2L	5692674	2L_5692674_SNP [dm3] 2L_5692674_SNP [dm6]	T	A	3.801e^-4	0.699	DOWNSTREAM CR44819 INTERGENIC
X	9287766	X_9287766_SNP [dm3] X_9393733_SNP [dm6]	T	C	3.820e^-4	0.699	INTRON mgl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12415207	2L_12415207_SNP [dm3] 2L_12415207_SNP [dm6]	A	G	3.823e^-4	0.699	INTRON vir-1
2L	8505284	2L_8505284_SNP [dm3] 2L_8505284_SNP [dm6]	C	A	3.828e^-4	0.699	INTRON Dh31

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.363e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.07406

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	5.4583	0.0653

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2203 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	3680402	3L_3680402_SNP [dm3] 3L_3680402_SNP [dm6]	T	C	4.237e^-7	0.556	INTERGENIC
2R	15697740	2R_15697740_SNP [dm3] 2R_19810235_SNP [dm6]	T	G	8.493e^-7	0.556	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	27128046	3R_27128046_SNP [dm3] 3R_31302324_SNP [dm6]	C	T	8.902e^-7	0.556	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_inv
2R	12696827	2R_12696827_SNP [dm3] 2R_16809322_SNP [dm6]	C	A	2.574e^-6	0.745	INTERGENIC
X	18464186	X_18464186_SNP [dm3] X_18570153_SNP [dm6]	C	A	2.913e^-6	0.745	INTRON Bx	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
2L	3997257	2L_3997257_INS [dm3] 2L_3997257_INS [dm6]	T	TGA	3.888e^-6	0.745	INTERGENIC
3L	14376180	3L_14376180_SNP [dm3] 3L_14383080_SNP [dm6]	C	T	3.946e^-6	0.745	UTR_3_PRIME CG43120
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	4.340e^-6	0.745	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13570329	3R_13570329_SNP [dm3] 3R_17744607_SNP [dm6]	A	C	4.779e^-6	0.745	INTRON TyrRII	TF binding site mE1_TFBS_cad
3L	14813948	3L_14813948_SNP [dm3] 3L_14820848_SNP [dm6]	G	A	4.965e^-6	0.745	INTRON CG17839
2L	7202015	2L_7202015_SNP [dm3] 2L_7202015_SNP [dm6]	C	A	5.882e^-6	0.745	INTRON CG4502
3L	2645081	3L_2645081_SNP [dm3] 3L_2645081_SNP [dm6]	A	G	6.989e^-6	0.745	UPSTREAM CG1143 INTERGENIC
3R	6253276	3R_6253276_SNP [dm3] 3R_10427554_SNP [dm6]	G	A	7.525e^-6	0.745	INTERGENIC
3L	18663595	3L_18663595_SNP [dm3] 3L_18670495_SNP [dm6]	T	C	7.679e^-6	0.745	SYNONYMOUS_CODING Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	11276731	3L_11276731_SNP [dm3] 3L_11283631_SNP [dm6]	A	G	7.986e^-6	0.745	INTERGENIC
3L	7777439	3L_7777439_SNP [dm3] 3L_7784339_SNP [dm6]	C	T	9.089e^-6	0.745	INTRON CG32369
3L	2645067	3L_2645067_SNP [dm3] 3L_2645067_SNP [dm6]	C	T	9.215e^-6	0.745	UPSTREAM CG1143 INTERGENIC
X	18463732	X_18463732_SNP [dm3] X_18569699_SNP [dm6]	A	G	1.083e^-5	0.745	INTRON Bx	TF binding site BDTNP1_TFBS_da
2L	17333598	2L_17333598_SNP [dm3] 2L_17333598_SNP [dm6]	G	A	1.151e^-5	0.745	INTERGENIC
X	7623480	X_7623480_SNP [dm3] X_7729447_SNP [dm6]	A	G	1.178e^-5	0.745	INTRON CG12155	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	11276715	3L_11276715_SNP [dm3] 3L_11283615_SNP [dm6]	A	C	1.313e^-5	0.745	INTERGENIC
3L	11276725	3L_11276725_SNP [dm3] 3L_11283625_SNP [dm6]	A	T	1.313e^-5	0.745	INTERGENIC
2R	13950559	2R_13950559_SNP [dm3] 2R_18063054_SNP [dm6]	A	T	1.370e^-5	0.745	INTRON CG34386
3L	7072423	3L_7072423_SNP [dm3] 3L_7079323_SNP [dm6]	C	A	1.393e^-5	0.745	INTERGENIC
3L	2644985	3L_2644985_SNP [dm3] 3L_2644985_SNP [dm6]	T	A	1.401e^-5	0.745	UPSTREAM CG1143 INTERGENIC
3R	18909679	3R_18909679_SNP [dm3] 3R_23083957_SNP [dm6]	C	A	1.402e^-5	0.745	INTRON CG13830	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7202010	2L_7202010_SNP [dm3] 2L_7202010_SNP [dm6]	C	T	1.467e^-5	0.745	INTRON CG4502
2L	7202011	2L_7202011_SNP [dm3] 2L_7202011_SNP [dm6]	G	A	1.487e^-5	0.745	INTRON CG4502
X	7613485	X_7613485_SNP [dm3] X_7719452_SNP [dm6]	G	A	1.593e^-5	0.745	INTERGENIC
3L	6100247	3L_6100247_SNP [dm3] 3L_6107147_SNP [dm6]	C	T	1.648e^-5	0.745	INTRON Ets65A	TF binding site mE1_TFBS_cad
3R	13600672	3R_13600672_SNP [dm3] 3R_17774950_SNP [dm6]	C	T	1.695e^-5	0.745	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8391972	3L_8391972_SNP [dm3] 3L_8398872_SNP [dm6]	A	T	1.765e^-5	0.745	INTRON CG7120
2L	7365708	2L_7365708_SNP [dm3] 2L_7365708_SNP [dm6]	C	T	1.784e^-5	0.745	INTRON Wnt10
2R	6795339	2R_6795339_SNP [dm3] 2R_10907834_SNP [dm6]	G	T	1.790e^-5	0.745	INTERGENIC
X	14154319	X_14154319_SNP [dm3] X_14260286_SNP [dm6]	G	C	1.852e^-5	0.745	UPSTREAM CG1461 INTERGENIC
3L	11277473	3L_11277473_SNP [dm3] 3L_11284373_SNP [dm6]	G	A	1.926e^-5	0.745	UPSTREAM CR45404 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	20396321	3R_20396321_SNP [dm3] 3R_24570599_SNP [dm6]	T	A	1.947e^-5	0.745	INTRON CG13624
3L	18662988	3L_18662988_INS [dm3] 3L_18669888_INS [dm6]	G	GCTG	1.953e^-5	0.745	CODON_INSERTION Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	12971257	3R_12971257_SNP [dm3] 3R_17145535_SNP [dm6]	A	C	1.988e^-5	0.745	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3R	12971260	3R_12971260_DEL [dm3] 3R_17145538_DEL [dm6]	AGGTAAGCATCCTA...	G	1.988e^-5	0.745	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	2.176e^-5	0.745	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	22141543	3R_22141543_SNP [dm3] 3R_26315821_SNP [dm6]	T	A	2.177e^-5	0.745	INTERGENIC
3L	8391974	3L_8391974_SNP [dm3] 3L_8398874_SNP [dm6]	G	A	2.279e^-5	0.745	INTRON CG7120
3L	2645044	3L_2645044_SNP [dm3] 3L_2645044_SNP [dm6]	T	G	2.316e^-5	0.745	UPSTREAM CG1143 INTERGENIC
3R	26700759	3R_26700759_SNP [dm3] 3R_30875037_SNP [dm6]	G	C	2.323e^-5	0.745	SYNONYMOUS_CODING CG15546	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6795340	2R_6795340_SNP [dm3] 2R_10907835_SNP [dm6]	A	G	2.359e^-5	0.745	INTERGENIC
2R	7961237	2R_7961237_SNP [dm3] 2R_12073732_SNP [dm6]	G	A	2.432e^-5	0.745	INTRON CG8888
3L	10756244	3L_10756244_SNP [dm3] 3L_10763144_SNP [dm6]	A	G	2.435e^-5	0.745	INTERGENIC
X	12772793	X_12772793_SNP [dm3] X_12878760_SNP [dm6]	T	A	2.484e^-5	0.745	INTRON Pde9
3L	2683655	3L_2683655_SNP [dm3] 3L_2683655_SNP [dm6]	A	G	2.543e^-5	0.745	INTRON Fife
3L	16983394	3L_16983394_SNP [dm3] 3L_16990294_SNP [dm6]	C	A	2.602e^-5	0.745	INTRON Exn
2R	11177864	2R_11177864_SNP [dm3] 2R_15290359_SNP [dm6]	A	G	2.623e^-5	0.745	INTRON Trpm
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	2.641e^-5	0.745	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
3L	6100199	3L_6100199_SNP [dm3] 3L_6107099_SNP [dm6]	C	T	2.700e^-5	0.745	INTRON Ets65A	TF binding site mE1_TFBS_cad
3R	9959340	3R_9959340_SNP [dm3] 3R_14133618_SNP [dm6]	C	T	2.713e^-5	0.745	INTERGENIC
X	18264596	X_18264596_SNP [dm3] X_18370563_SNP [dm6]	A	G	2.713e^-5	0.745	UPSTREAM CrebB & 1 other INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Trl
3L	2645041	3L_2645041_SNP [dm3] 3L_2645041_SNP [dm6]	G	T	2.788e^-5	0.745	UPSTREAM CG1143 INTERGENIC
3L	742989	3L_742989_SNP [dm3] 3L_742989_SNP [dm6]	C	A	2.797e^-5	0.745	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	4934321	3R_4934321_SNP [dm3] 3R_9108599_SNP [dm6]	G	A	2.798e^-5	0.745	INTRON pum
2R	12400793	2R_12400793_SNP [dm3] 2R_16513288_SNP [dm6]	C	G	2.799e^-5	0.745	INTRON Sema-2a
3L	743080	3L_743080_SNP [dm3] 3L_743080_SNP [dm6]	T	A	2.850e^-5	0.745	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	11251263	2R_11251263_SNP [dm3] 2R_15363758_SNP [dm6]	T	A	2.854e^-5	0.745	INTRON unc-5
3L	11599845	3L_11599845_SNP [dm3] 3L_11606745_SNP [dm6]	T	C	2.898e^-5	0.745	SYNONYMOUS_CODING CG6091
3L	3090995	3L_3090995_SNP [dm3] 3L_3090995_SNP [dm6]	C	T	2.910e^-5	0.745	UTR_3_PRIME Cht7 DOWNSTREAM CG11486 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	11278216	2R_11278216_SNP [dm3] 2R_15390711_SNP [dm6]	T	C	3.079e^-5	0.745	INTERGENIC
3L	14560642	3L_14560642_SNP [dm3] 3L_14567542_SNP [dm6]	C	A	3.120e^-5	0.745	INTRON CG42758
3L	2645600	3L_2645600_SNP [dm3] 3L_2645600_SNP [dm6]	A	T	3.122e^-5	0.745	INTRON CG1143	TF binding site mE1_TFBS_cad
2L	2279895	2L_2279895_SNP [dm3] 2L_2279895_SNP [dm6]	G	A	3.274e^-5	0.745	UPSTREAM CR43753 INTERGENIC
2L	10785598	2L_10785598_SNP [dm3] 2L_10785598_SNP [dm6]	A	T	3.281e^-5	0.745	INTRON CG31869 EXON CR44582
X	16847578	X_16847578_SNP [dm3] X_16953545_SNP [dm6]	T	C	3.301e^-5	0.745	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2926031	X_2926031_SNP [dm3] X_3031998_SNP [dm6]	C	A	3.306e^-5	0.745	INTRON kirre
3L	5886015	3L_5886015_SNP [dm3] 3L_5892915_SNP [dm6]	C	G	3.310e^-5	0.745	INTERGENIC
2R	7961258	2R_7961258_SNP [dm3] 2R_12073753_SNP [dm6]	A	G	3.524e^-5	0.745	INTRON CG8888
2R	13415564	2R_13415564_SNP [dm3] 2R_17528059_SNP [dm6]	G	A	3.542e^-5	0.745	SYNONYMOUS_CODING Patronin
2R	12456090	2R_12456090_SNP [dm3] 2R_16568585_SNP [dm6]	G	A	3.582e^-5	0.745	SYNONYMOUS_CODING CG4945	TF binding site mE1_TFBS_cad
X	18265153	X_18265153_SNP [dm3] X_18371120_SNP [dm6]	G	T	3.593e^-5	0.745	UTR_5_PRIME CrebB UPSTREAM CrebB INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	18575735	3L_18575735_SNP [dm3] 3L_18582635_SNP [dm6]	C	A	3.605e^-5	0.745	UPSTREAM CR45435 INTERGENIC
3L	16983298	3L_16983298_INS [dm3] 3L_16990198_INS [dm6]	A	AG	3.646e^-5	0.745	INTRON Exn
2R	10998493	2R_10998493_SNP [dm3] 2R_15110988_SNP [dm6]	A	G	3.649e^-5	0.745	INTERGENIC
3L	2644981	3L_2644981_SNP [dm3] 3L_2644981_SNP [dm6]	A	T	3.735e^-5	0.745	UPSTREAM CG1143 INTERGENIC
3L	4534444	3L_4534444_SNP [dm3] 3L_4534444_SNP [dm6]	C	A	3.781e^-5	0.745	INTRON CG11353
3R	22615421	3R_22615421_SNP [dm3] 3R_26789699_SNP [dm6]	T	A	3.822e^-5	0.745	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	2669602	2L_2669602_SNP [dm3] 2L_2669602_SNP [dm6]	G	T	3.873e^-5	0.745	UPSTREAM Gr23a INTERGENIC
2L	8697403	2L_8697403_SNP [dm3] 2L_8697403_SNP [dm6]	T	G	3.919e^-5	0.745	INTRON Hnf4
2R	19007092	2R_19007092_SNP [dm3] 2R_23119569_SNP [dm6]	G	T	4.052e^-5	0.745	INTERGENIC
3L	17460040	3L_17460040_INS [dm3] 3L_17466940_INS [dm6]	T	GG	4.074e^-5	0.745	DOWNSTREAM CG7603 INTERGENIC
2L	5544938	2L_5544938_SNP [dm3] 2L_5544938_SNP [dm6]	A	T	4.088e^-5	0.745	SYNONYMOUS_CODING Lam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	8696998	2L_8696998_SNP [dm3] 2L_8696998_SNP [dm6]	C	G	4.187e^-5	0.745	INTRON Hnf4	TF binding site mE1_TFBS_cnc
X	3381344	X_3381344_SNP [dm3] X_3487311_SNP [dm6]	T	C	4.227e^-5	0.745	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_sens
3L	7726328	3L_7726328_SNP [dm3] 3L_7733228_SNP [dm6]	T	C	4.253e^-5	0.745	DOWNSTREAM Snmp2 INTRON CG32373
2R	10998491	2R_10998491_SNP [dm3] 2R_15110986_SNP [dm6]	A	G	4.341e^-5	0.745	INTERGENIC
2R	5970480	2R_5970480_SNP [dm3] 2R_10082975_SNP [dm6]	C	T	4.403e^-5	0.745	SPLICE_SITE_REGION egr INTRON egr
3L	743033	3L_743033_SNP [dm3] 3L_743033_SNP [dm6]	C	T	4.411e^-5	0.745	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	4841343	3L_4841343_SNP [dm3] 3L_4841343_SNP [dm6]	A	C	4.433e^-5	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	10196368	3R_10196368_SNP [dm3] 3R_14370646_SNP [dm6]	T	A	4.453e^-5	0.745	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	10998501	2R_10998501_SNP [dm3] 2R_15110996_SNP [dm6]	T	G	4.493e^-5	0.745	INTERGENIC
3L	743084	3L_743084_INS [dm3] 3L_743084_INS [dm6]	T	TT	4.497e^-5	0.745	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	14555445	3L_14555445_SNP [dm3] 3L_14562345_SNP [dm6]	A	T	4.506e^-5	0.745	INTRON CG34039	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
X	17014026	X_17014026_SNP [dm3] X_17119993_SNP [dm6]	C	T	4.510e^-5	0.745	INTRON CG5004
3L	1610355	3L_1610355_SNP [dm3] 3L_1610355_SNP [dm6]	C	A	4.611e^-5	0.745	DOWNSTREAM CG12105 INTRON CG33791 & 1 other
X	3380974	X_3380974_SNP [dm3] X_3486941_SNP [dm6]	G	A	4.747e^-5	0.745	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3381085	X_3381085_SNP [dm3] X_3487052_SNP [dm6]	G	C	4.747e^-5	0.745	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13600041	3R_13600041_SNP [dm3] 3R_17774319_SNP [dm6]	C	T	4.796e^-5	0.745	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
2R	10998512	2R_10998512_SNP [dm3] 2R_15111007_SNP [dm6]	G	T	4.799e^-5	0.745	INTERGENIC
2R	19127148	2R_19127148_SNP [dm3] 2R_23239625_SNP [dm6]	T	G	4.813e^-5	0.745	INTERGENIC
2L	1675714	2L_1675714_SNP [dm3] 2L_1675714_SNP [dm6]	T	A	4.853e^-5	0.745	INTRON chinmo
2L	1675720	2L_1675720_SNP [dm3] 2L_1675720_SNP [dm6]	C	G	4.853e^-5	0.745	INTRON chinmo
3L	9661340	3L_9661340_SNP [dm3] 3L_9668240_SNP [dm6]	C	G	4.853e^-5	0.745	INTRON fry	TF binding site mE1_TFBS_cad
3R	4342921	3R_4342921_SNP [dm3] 3R_8517199_SNP [dm6]	C	T	4.855e^-5	0.745	UPSTREAM CG11737 INTERGENIC
2R	19024849	2R_19024849_SNP [dm3] 2R_23137326_SNP [dm6]	T	G	4.882e^-5	0.745	INTERGENIC
X	18262665	X_18262665_SNP [dm3] X_18368632_SNP [dm6]	T	G	5.004e^-5	0.745	INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	15596175	2R_15596175_DEL [dm3] 2R_19708670_DEL [dm6]	TTAAA	T	5.020e^-5	0.745	INTERGENIC
2R	15596182	2R_15596182_DEL [dm3] 2R_19708677_DEL [dm6]	TA	T	5.020e^-5	0.745	INTERGENIC
2L	21921535	2L_21921535_SNP [dm3] 2L_21921535_SNP [dm6]	T	C	5.061e^-5	0.745	INTERGENIC
2R	16289150	2R_16289150_SNP [dm3] 2R_20401645_SNP [dm6]	G	A	5.064e^-5	0.745	INTERGENIC
2R	14932148	2R_14932148_DEL [dm3] 2R_19044643_DEL [dm6]	AA	A	5.089e^-5	0.745	INTERGENIC
X	18464310	X_18464310_SNP [dm3] X_18570277_SNP [dm6]	C	T	5.180e^-5	0.745	INTRON Bx	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
2L	20860404	2L_20860404_SNP [dm3] 2L_20860404_SNP [dm6]	C	T	5.203e^-5	0.745	INTRON CG9336
2L	2922161	2L_2922161_SNP [dm3] 2L_2922161_SNP [dm6]	T	A	5.259e^-5	0.745	INTRON lilli
3L	17460045	3L_17460045_SNP [dm3] 3L_17466945_SNP [dm6]	C	T	5.341e^-5	0.745	DOWNSTREAM CG7603 INTERGENIC
2R	11724908	2R_11724908_SNP [dm3] 2R_15837403_SNP [dm6]	C	T	5.426e^-5	0.745	INTRON tun	regulatory region REDfly_CRMs
2R	14452456	2R_14452456_SNP [dm3] 2R_18564951_SNP [dm6]	G	A	5.447e^-5	0.745	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1103387	3L_1103387_SNP [dm3] 3L_1103387_SNP [dm6]	C	T	5.448e^-5	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	18758721	3R_18758721_SNP [dm3] 3R_22932999_SNP [dm6]	G	A	5.616e^-5	0.745	INTRON klg
X	21160839	X_21160839_SNP [dm3] X_21289812_SNP [dm6]	T	C	5.739e^-5	0.745	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21160844	X_21160844_SNP [dm3] X_21289817_SNP [dm6]	G	C	5.749e^-5	0.745	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13415561	2R_13415561_SNP [dm3] 2R_17528056_SNP [dm6]	A	G	5.769e^-5	0.745	SYNONYMOUS_CODING Patronin
X	7623661	X_7623661_SNP [dm3] X_7729628_SNP [dm6]	G	T	5.785e^-5	0.745	INTRON CG12155	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11278234	2R_11278234_SNP [dm3] 2R_15390729_SNP [dm6]	C	G	5.846e^-5	0.745	INTERGENIC
2L	8807137	2L_8807137_SNP [dm3] 2L_8807137_SNP [dm6]	T	C	5.903e^-5	0.745	INTERGENIC
2L	12325115	2L_12325115_SNP [dm3] 2L_12325115_SNP [dm6]	T	C	5.944e^-5	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9443469	2L_9443469_SNP [dm3] 2L_9443469_SNP [dm6]	C	T	5.966e^-5	0.745	INTRON numb
2R	7157527	2R_7157527_SNP [dm3] 2R_11270022_SNP [dm6]	A	G	5.988e^-5	0.745	SYNONYMOUS_CODING Cpr47Ef	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13739800	2R_13739800_SNP [dm3] 2R_17852295_SNP [dm6]	G	T	6.024e^-5	0.745	UPSTREAM CG30323 INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6389905	2L_6389905_SNP [dm3] 2L_6389905_SNP [dm6]	C	T	6.036e^-5	0.745	INTRON CG42368	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16890622	3R_16890622_SNP [dm3] 3R_21064900_SNP [dm6]	G	A	6.075e^-5	0.745	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
2R	17725920	2R_17725920_SNP [dm3] 2R_21838415_SNP [dm6]	C	T	6.135e^-5	0.745	SYNONYMOUS_CODING CG4372
3L	2645026	3L_2645026_SNP [dm3] 3L_2645026_SNP [dm6]	T	A	6.153e^-5	0.745	UPSTREAM CG1143 INTERGENIC
2L	16619019	2L_16619019_SNP [dm3] 2L_16619019_SNP [dm6]	T	A	6.255e^-5	0.745	INTRON CG42389	TF binding site BDTNP1_TFBS_dl
2R	3188996	2R_3188996_SNP [dm3] 2R_7301491_SNP [dm6]	T	A	6.255e^-5	0.745	DOWNSTREAM pwn INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	742992	3L_742992_DEL [dm3] 3L_742992_DEL [dm6]	ATGGTTTTTGATAACTAA...	A	6.336e^-5	0.745	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	743046	3L_743046_SNP [dm3] 3L_743046_SNP [dm6]	A	T	6.351e^-5	0.745	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	22297776	2L_22297776_SNP [dm3] 2L_22297776_SNP [dm6]	G	A	6.361e^-5	0.745	INTERGENIC	transposable element FlyBase
2R	7961037	2R_7961037_SNP [dm3] 2R_12073532_SNP [dm6]	G	A	6.398e^-5	0.745	INTRON CG8888
3L	1570824	3L_1570824_SNP [dm3] 3L_1570824_SNP [dm6]	T	C	6.401e^-5	0.745	INTRON CG12004	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	14646889	2R_14646889_SNP [dm3] 2R_18759384_SNP [dm6]	C	T	6.403e^-5	0.745	SPLICE_SITE_REGION Jabba INTRON Jabba
3R	5145048	3R_5145048_SNP [dm3] 3R_9319326_SNP [dm6]	G	A	6.521e^-5	0.745	INTRON CG8861
2R	12696341	2R_12696341_SNP [dm3] 2R_16808836_SNP [dm6]	C	T	6.554e^-5	0.745	INTERGENIC
2L	7202014	2L_7202014_SNP [dm3] 2L_7202014_SNP [dm6]	C	A	6.560e^-5	0.745	INTRON CG4502
3L	18663271	3L_18663271_SNP [dm3] 3L_18670171_SNP [dm6]	T	C	6.576e^-5	0.745	SYNONYMOUS_CODING Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	15292459	3R_15292459_SNP [dm3] 3R_19466737_SNP [dm6]	A	C	6.608e^-5	0.745	INTRON Dys
3R	13600157	3R_13600157_SNP [dm3] 3R_17774435_SNP [dm6]	T	G	6.617e^-5	0.745	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3L	6100265	3L_6100265_SNP [dm3] 3L_6107165_SNP [dm6]	C	T	6.656e^-5	0.745	INTRON Ets65A	TF binding site mE1_TFBS_cad
3L	4817350	3L_4817350_SNP [dm3] 3L_4817350_SNP [dm6]	G	A	6.703e^-5	0.745	SYNONYMOUS_CODING Dhc64C
3R	6253307	3R_6253307_SNP [dm3] 3R_10427585_SNP [dm6]	G	T	6.712e^-5	0.745	INTERGENIC
2R	3178769	2R_3178769_SNP [dm3] 2R_7291264_SNP [dm6]	G	A	6.833e^-5	0.745	INTRON pwn	TF binding site mE1_TFBS_cad
X	2926734	X_2926734_SNP [dm3] X_3032701_SNP [dm6]	C	A	6.863e^-5	0.745	INTRON kirre
2R	12400940	2R_12400940_SNP [dm3] 2R_16513435_SNP [dm6]	T	C	6.986e^-5	0.745	INTRON Sema-2a
3R	5137887	3R_5137887_SNP [dm3] 3R_9312165_SNP [dm6]	A	G	6.999e^-5	0.745	INTRON CG8861
2R	18542624	2R_18542624_SNP [dm3] 2R_22655119_SNP [dm6]	A	T	7.049e^-5	0.745	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other INTRON CG30196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4556778	3L_4556778_SNP [dm3] 3L_4556778_SNP [dm6]	A	C	7.073e^-5	0.745	UPSTREAM CG42540 INTRON CG42540
2R	10544277	2R_10544277_SNP [dm3] 2R_14656772_SNP [dm6]	C	T	7.135e^-5	0.745	DOWNSTREAM Adgf-E INTERGENIC
3R	5121979	3R_5121979_SNP [dm3] 3R_9296257_SNP [dm6]	T	G	7.138e^-5	0.745	INTRON CG8861
X	3110950	X_3110950_SNP [dm3] X_3216917_SNP [dm6]	A	C	7.138e^-5	0.745	INTRON dnc
3R	16890626	3R_16890626_SNP [dm3] 3R_21064904_SNP [dm6]	A	T	7.147e^-5	0.745	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3L	6100256	3L_6100256_SNP [dm3] 3L_6107156_SNP [dm6]	A	C	7.211e^-5	0.745	INTRON Ets65A	TF binding site mE1_TFBS_cad
3L	5888622	3L_5888622_SNP [dm3] 3L_5895522_SNP [dm6]	G	T	7.265e^-5	0.745	DOWNSTREAM Pole2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4737859	3L_4737859_SNP [dm3] 3L_4737859_SNP [dm6]	A	G	7.304e^-5	0.745	INTRON RhoGEF64C
2R	11907181	2R_11907181_SNP [dm3] 2R_16019676_SNP [dm6]	A	G	7.383e^-5	0.745	INTRON CG8399
2R	16265606	2R_16265606_SNP [dm3] 2R_20378101_SNP [dm6]	C	A	7.437e^-5	0.745	INTERGENIC
2R	18542315	2R_18542315_SNP [dm3] 2R_22654810_SNP [dm6]	A	T	7.444e^-5	0.745	UTR_3_PRIME CG30196 UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other	TF binding site mE1_TFBS_cad
2R	15903310	2R_15903310_DEL [dm3] 2R_20015805_DEL [dm6]	TGA	T	7.461e^-5	0.745	DOWNSTREAM CR44630 INTERGENIC
3L	13310290	3L_13310290_SNP [dm3] 3L_13317190_SNP [dm6]	T	G	7.507e^-5	0.745	INTERGENIC
X	2310890	X_2310890_SNP [dm3] X_2416857_SNP [dm6]	C	G	7.564e^-5	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4930748	2L_4930748_SNP [dm3] 2L_4930748_SNP [dm6]	T	A	7.565e^-5	0.745	INTRON hoe1
3L	8908321	3L_8908321_SNP [dm3] 3L_8915221_SNP [dm6]	C	T	7.607e^-5	0.745	UPSTREAM CR43970 INTRON Tsp66E
3L	3680449	3L_3680449_SNP [dm3] 3L_3680449_SNP [dm6]	G	A	7.629e^-5	0.745	INTERGENIC	TF binding site mE1_TFBS_cad
3L	743058	3L_743058_SNP [dm3] 3L_743058_SNP [dm6]	T	A	7.657e^-5	0.745	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	3832016	2L_3832016_SNP [dm3] 2L_3832016_SNP [dm6]	G	A	7.779e^-5	0.745	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE
3L	11791042	3L_11791042_SNP [dm3] 3L_11797942_SNP [dm6]	A	G	7.784e^-5	0.745	SYNONYMOUS_CODING Klp68D	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10998487	2R_10998487_SNP [dm3] 2R_15110982_SNP [dm6]	T	C	7.819e^-5	0.745	INTERGENIC
X	12850971	X_12850971_SNP [dm3] X_12956938_SNP [dm6]	G	T	7.833e^-5	0.745	INTRON hec
3L	4556796	3L_4556796_INS [dm3] 3L_4556796_INS [dm6]	T	TA	7.840e^-5	0.745	UPSTREAM CG42540 INTRON CG42540
X	22332606	X_22332606_SNP [dm3] X_22930770_SNP [dm6]	C	G	7.848e^-5	0.745	INTERGENIC
X	3380537	X_3380537_SNP [dm3] X_3486504_SNP [dm6]	A	G	7.882e^-5	0.745	NON_SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_sens
3L	14816170	3L_14816170_SNP [dm3] 3L_14823070_SNP [dm6]	A	T	7.956e^-5	0.745	INTRON CG17839
2R	14978893	2R_14978893_SNP [dm3] 2R_19091388_SNP [dm6]	C	T	8.041e^-5	0.745	SYNONYMOUS_CODING 5-HT1A
2L	9443434	2L_9443434_SNP [dm3] 2L_9443434_SNP [dm6]	C	T	8.104e^-5	0.745	INTRON numb
X	9621573	X_9621573_SNP [dm3] X_9727540_SNP [dm6]	A	C	8.117e^-5	0.745	DOWNSTREAM CR43498 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8619047	2L_8619047_SNP [dm3] 2L_8619047_SNP [dm6]	C	T	8.137e^-5	0.745	UPSTREAM tRNA:CR31602 INTRON Sema-1a
2R	18542312	2R_18542312_SNP [dm3] 2R_22654807_SNP [dm6]	C	G	8.169e^-5	0.745	UTR_3_PRIME CG30196 UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other	TF binding site mE1_TFBS_cad
X	9814806	X_9814806_DEL [dm3] X_9920773_DEL [dm6]	TT	T	8.177e^-5	0.745	INTERGENIC
3R	26618541	3R_26618541_SNP [dm3] 3R_30792819_SNP [dm6]	A	G	8.258e^-5	0.745	SYNONYMOUS_CODING wts	TF binding site mE1_TFBS_chinmo
2L	4930475	2L_4930475_SNP [dm3] 2L_4930475_SNP [dm6]	A	G	8.258e^-5	0.745	INTRON hoe1
X	19871581	X_19871581_SNP [dm3] X_19977548_SNP [dm6]	T	G	8.267e^-5	0.745	INTERGENIC
3L	7156753	3L_7156753_SNP [dm3] 3L_7163653_SNP [dm6]	G	A	8.285e^-5	0.745	INTRON Dscam2
3L	7156769	3L_7156769_SNP [dm3] 3L_7163669_SNP [dm6]	G	A	8.285e^-5	0.745	INTRON Dscam2
X	8402577	X_8402577_SNP [dm3] X_8508544_SNP [dm6]	G	A	8.293e^-5	0.745	INTRON CG33181
2R	12678631	2R_12678631_SNP [dm3] 2R_16791126_SNP [dm6]	G	A	8.297e^-5	0.745	SYNONYMOUS_CODING CG5522	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	9557212	3L_9557212_SNP [dm3] 3L_9564112_SNP [dm6]	A	T	8.310e^-5	0.745	INTRON CG42673
2R	20946369	2R_20946369_SNP [dm3] 2R_25058846_SNP [dm6]	C	T	8.366e^-5	0.745	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3R	18780271	3R_18780271_SNP [dm3] 3R_22954549_SNP [dm6]	G	A	8.386e^-5	0.745	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	21171393	X_21171393_SNP [dm3] X_21300366_SNP [dm6]	G	C	8.386e^-5	0.745	UTR_5_PRIME CG1718
X	19115295	X_19115295_SNP [dm3] X_19221262_SNP [dm6]	C	A	8.409e^-5	0.745	INTRON CG7884	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	5145560	3L_5145560_SNP [dm3] 3L_5152460_SNP [dm6]	T	A	8.482e^-5	0.745	UPSTREAM Srp54k & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4737896	3L_4737896_SNP [dm3] 3L_4737896_SNP [dm6]	G	A	8.549e^-5	0.745	INTRON RhoGEF64C
2R	8479010	2R_8479010_SNP [dm3] 2R_12591505_SNP [dm6]	T	C	8.587e^-5	0.745	DOWNSTREAM CR30055 INTRON Sin3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
3L	4556656	3L_4556656_SNP [dm3] 3L_4556656_SNP [dm6]	C	G	8.645e^-5	0.745	UPSTREAM CG42540 INTRON CG42540
3R	16890386	3R_16890386_SNP [dm3] 3R_21064664_SNP [dm6]	A	G	8.656e^-5	0.745	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2L	15281202	2L_15281202_DEL [dm3] 2L_15281202_DEL [dm6]	CC	T	8.720e^-5	0.745	DOWNSTREAM CR45349 INTERGENIC
3R	14344614	3R_14344614_SNP [dm3] 3R_18518892_SNP [dm6]	T	A	8.812e^-5	0.745	INTRON fru
3R	5129759	3R_5129759_SNP [dm3] 3R_9304037_SNP [dm6]	C	A	8.874e^-5	0.745	INTRON CG8861
2R	9147038	2R_9147038_SNP [dm3] 2R_13259533_SNP [dm6]	G	A	8.892e^-5	0.745	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3L	12568589	3L_12568589_SNP [dm3] 3L_12575489_SNP [dm6]	G	T	8.917e^-5	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11276693	3L_11276693_SNP [dm3] 3L_11283593_SNP [dm6]	A	G	8.962e^-5	0.745	INTERGENIC
2R	10847556	2R_10847556_SNP [dm3] 2R_14960051_SNP [dm6]	T	G	8.976e^-5	0.745	INTRON aPKC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2646789	3L_2646789_SNP [dm3] 3L_2646789_SNP [dm6]	T	G	8.983e^-5	0.745	UTR_3_PRIME CG1143 DOWNSTREAM CG1143
3L	4737895	3L_4737895_SNP [dm3] 3L_4737895_SNP [dm6]	A	G	9.070e^-5	0.745	INTRON RhoGEF64C
2L	15090507	2L_15090507_SNP [dm3] 2L_15090507_SNP [dm6]	T	C	9.088e^-5	0.745	INTRON CG15270
2R	18542589	2R_18542589_SNP [dm3] 2R_22655084_SNP [dm6]	A	G	9.172e^-5	0.745	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other INTRON CG30196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15903314	2R_15903314_SNP [dm3] 2R_20015809_SNP [dm6]	A	C	9.216e^-5	0.745	DOWNSTREAM CR44630 INTERGENIC
3L	21424490	3L_21424490_SNP [dm3] 3L_21431390_SNP [dm6]	A	C	9.237e^-5	0.745	SYNONYMOUS_CODING CG33288 INTRON barc	TF binding site mE1_TFBS_sens
2L	9430498	2L_9430498_SNP [dm3] 2L_9430498_SNP [dm6]	T	A	9.266e^-5	0.745	UPSTREAM FucTB & 1 other INTRON FucTB
3L	4668341	3L_4668341_SNP [dm3] 3L_4668341_SNP [dm6]	A	G	9.325e^-5	0.745	UPSTREAM CG32236 INTRON axo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9463941	2L_9463941_SNP [dm3] 2L_9463941_SNP [dm6]	T	C	9.328e^-5	0.745	UTR_3_PRIME numb DOWNSTREAM numb
2R	18542217	2R_18542217_SNP [dm3] 2R_22654712_SNP [dm6]	T	G	9.361e^-5	0.745	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG30196 & 2 others INTERGENIC	TF binding site mE1_TFBS_cad
2R	19317545	2R_19317545_SNP [dm3] 2R_23430022_SNP [dm6]	G	T	9.378e^-5	0.745	INTRON CG9815
2R	16998554	2R_16998554_SNP [dm3] 2R_21111049_SNP [dm6]	A	T	9.411e^-5	0.745	INTRON ktub
2R	19008611	2R_19008611_SNP [dm3] 2R_23121088_SNP [dm6]	G	A	9.420e^-5	0.745	INTERGENIC
3L	9491503	3L_9491503_SNP [dm3] 3L_9498403_SNP [dm6]	T	C	9.437e^-5	0.745	INTRON path
2R	8479079	2R_8479079_SNP [dm3] 2R_12591574_SNP [dm6]	G	T	9.448e^-5	0.745	DOWNSTREAM CR30055 INTRON Sin3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
3L	20635410	3L_20635410_SNP [dm3] 3L_20642310_SNP [dm6]	T	A	9.453e^-5	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
3L	17624822	3L_17624822_SNP [dm3] 3L_17631722_SNP [dm6]	G	C	9.509e^-5	0.745	DOWNSTREAM CG7510 EXON CR44566
X	18115559	X_18115559_SNP [dm3] X_18221526_SNP [dm6]	C	T	9.510e^-5	0.745	INTRON CG33639	TF binding site mE1_TFBS_chinmo
3L	1103352	3L_1103352_INS [dm3] 3L_1103352_INS [dm6]	T	TGTAT	9.517e^-5	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	4950454	2R_4950454_SNP [dm3] 2R_9062949_SNP [dm6]	G	A	9.570e^-5	0.745	INTRON ana	regulatory region REDfly_CRMs
3L	11276913	3L_11276913_SNP [dm3] 3L_11283813_SNP [dm6]	C	G	9.570e^-5	0.745	UPSTREAM CR45404 INTERGENIC
X	14154318	X_14154318_SNP [dm3] X_14260285_SNP [dm6]	T	G	9.598e^-5	0.745	UPSTREAM CG1461 INTERGENIC
3R	22618992	3R_22618992_SNP [dm3] 3R_26793270_SNP [dm6]	A	G	9.611e^-5	0.745	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14835265	3L_14835265_SNP [dm3] 3L_14842165_SNP [dm6]	T	C	9.628e^-5	0.745	INTRON CG17839
X	19871890	X_19871890_SNP [dm3] X_19977857_SNP [dm6]	C	T	9.628e^-5	0.745	INTERGENIC
2R	11409444	2R_11409444_SNP [dm3] 2R_15521939_SNP [dm6]	A	G	9.629e^-5	0.745	SPLICE_SITE_REGION Khc-73 SYNONYMOUS_CODING Khc-73
2R	3072957	2R_3072957_SNP [dm3] 2R_7185452_SNP [dm6]	C	T	9.706e^-5	0.745	DOWNSTREAM CG30384 INTRON pk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19769710	3R_19769710_SNP [dm3] 3R_23943988_SNP [dm6]	G	A	9.811e^-5	0.745	SYNONYMOUS_CODING CG12268 UPSTREAM Gdh	TF binding site mE1_TFBS_cad
2R	11340150	2R_11340150_SNP [dm3] 2R_15452645_SNP [dm6]	A	T	9.814e^-5	0.745	INTRON CG43729
3R	26618196	3R_26618196_SNP [dm3] 3R_30792474_SNP [dm6]	C	T	9.867e^-5	0.745	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
3R	17347034	3R_17347034_SNP [dm3] 3R_21521312_SNP [dm6]	G	T	9.914e^-5	0.745	INTRON CG7956	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	14816333	3L_14816333_SNP [dm3] 3L_14823233_SNP [dm6]	G	A	9.924e^-5	0.745	INTRON CG17839
3L	6100268	3L_6100268_SNP [dm3] 3L_6107168_SNP [dm6]	G	C	9.963e^-5	0.745	INTRON Ets65A	TF binding site mE1_TFBS_cad
3L	11270074	3L_11270074_SNP [dm3] 3L_11276974_SNP [dm6]	A	G	9.987e^-5	0.745	INTERGENIC
X	19019176	X_19019176_SNP [dm3] X_19125143_SNP [dm6]	C	A	1.000e^-4	0.745	UTR_3_PRIME tgy UPSTREAM CG15882 DOWNSTREAM tgy
2L	7201933	2L_7201933_SNP [dm3] 2L_7201933_SNP [dm6]	T	A	1.001e^-4	0.745	INTRON CG4502
2R	8479078	2R_8479078_SNP [dm3] 2R_12591573_SNP [dm6]	G	T	1.008e^-4	0.747	DOWNSTREAM CR30055 INTRON Sin3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2R	7961322	2R_7961322_SNP [dm3] 2R_12073817_SNP [dm6]	C	T	1.019e^-4	0.752	INTRON CG8888
2R	9147009	2R_9147009_SNP [dm3] 2R_13259504_SNP [dm6]	T	G	1.033e^-4	0.759	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3R	26628563	3R_26628563_SNP [dm3] 3R_30802841_SNP [dm6]	G	C	1.047e^-4	0.767	INTRON wts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
3L	11276624	3L_11276624_SNP [dm3] 3L_11283524_SNP [dm6]	G	A	1.055e^-4	0.77	INTERGENIC
3L	17323053	3L_17323053_SNP [dm3] 3L_17329953_SNP [dm6]	A	T	1.074e^-4	0.772	UPSTREAM Or74a INTERGENIC
3R	15325922	3R_15325922_INS [dm3] 3R_19500200_INS [dm6]	A	AGATTCTTCTTAAA...	1.084e^-4	0.772	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	16619032	2L_16619032_SNP [dm3] 2L_16619032_SNP [dm6]	A	C	1.086e^-4	0.772	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	10846476	2R_10846476_SNP [dm3] 2R_14958971_SNP [dm6]	T	C	1.092e^-4	0.772	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10951763	3L_10951763_SNP [dm3] 3L_10958663_SNP [dm6]	G	C	1.093e^-4	0.772	UPSTREAM CR45248 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4318113	2L_4318113_SNP [dm3] 2L_4318113_SNP [dm6]	T	C	1.094e^-4	0.772	INTRON tutl	TF binding site mE1_TFBS_HSA
3L	9201306	3L_9201306_SNP [dm3] 3L_9208206_SNP [dm6]	C	T	1.098e^-4	0.772	UTR_5_PRIME Slc45-1 UPSTREAM Slc45-1
3R	15292424	3R_15292424_SNP [dm3] 3R_19466702_SNP [dm6]	T	G	1.108e^-4	0.772	INTRON Dys
3R	7321694	3R_7321694_SNP [dm3] 3R_11495972_SNP [dm6]	T	C	1.108e^-4	0.772	INTERGENIC
X	17259658	X_17259658_SNP [dm3] X_17365625_SNP [dm6]	T	C	1.108e^-4	0.772	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	2645611	3L_2645611_SNP [dm3] 3L_2645611_SNP [dm6]	C	A	1.115e^-4	0.772	INTRON CG1143	TF binding site mE1_TFBS_cad
3L	1570866	3L_1570866_SNP [dm3] 3L_1570866_SNP [dm6]	T	C	1.118e^-4	0.772	INTRON CG12004	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	19871664	X_19871664_SNP [dm3] X_19977631_SNP [dm6]	C	G	1.123e^-4	0.772	INTERGENIC
2L	5496684	2L_5496684_SNP [dm3] 2L_5496684_SNP [dm6]	A	G	1.123e^-4	0.772	INTERGENIC
2R	16998506	2R_16998506_SNP [dm3] 2R_21111001_SNP [dm6]	A	G	1.125e^-4	0.772	INTRON ktub
X	21081580	X_21081580_SNP [dm3] X_21210553_SNP [dm6]	A	G	1.128e^-4	0.772	INTRON CG32521
3L	14561384	3L_14561384_SNP [dm3] 3L_14568284_SNP [dm6]	G	A	1.135e^-4	0.772	DOWNSTREAM CG42758 INTERGENIC
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	1.137e^-4	0.772	INTRON dnc
2L	376777	2L_376777_SNP [dm3] 2L_376777_SNP [dm6]	G	A	1.140e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	9147010	2R_9147010_SNP [dm3] 2R_13259505_SNP [dm6]	T	G	1.141e^-4	0.772	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3R	6105638	3R_6105638_DEL [dm3] 3R_10279916_DEL [dm6]	ATGACTCCA	A	1.147e^-4	0.774	INTRON CG43143
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	1.154e^-4	0.774	EXON CR44950
2R	14271036	2R_14271036_SNP [dm3] 2R_18383531_SNP [dm6]	A	T	1.161e^-4	0.774	UPSTREAM IM1 & 1 other INTERGENIC
3R	10410917	3R_10410917_SNP [dm3] 3R_14585195_SNP [dm6]	A	T	1.180e^-4	0.774	INTRON stumps	TF binding site BDTNP1_TFBS_prd
3R	10575129	3R_10575129_SNP [dm3] 3R_14749407_SNP [dm6]	C	G	1.182e^-4	0.774	UPSTREAM jvl & 1 other INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	6105675	3R_6105675_SNP [dm3] 3R_10279953_SNP [dm6]	T	A	1.183e^-4	0.774	INTRON CG43143
2R	13556691	2R_13556691_SNP [dm3] 2R_17669186_SNP [dm6]	G	T	1.189e^-4	0.774	UTR_3_PRIME eIF3-S8 UPSTREAM CG30108 & 1 other DOWNSTREAM eIF3-S8	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cnc
3R	16709916	3R_16709916_SNP [dm3] 3R_20884194_SNP [dm6]	A	T	1.196e^-4	0.774	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9661317	3L_9661317_SNP [dm3] 3L_9668217_SNP [dm6]	A	G	1.199e^-4	0.774	INTRON fry	TF binding site mE1_TFBS_cad
3R	18780272	3R_18780272_SNP [dm3] 3R_22954550_SNP [dm6]	A	G	1.199e^-4	0.774	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	18542565	2R_18542565_SNP [dm3] 2R_22655060_SNP [dm6]	G	A	1.200e^-4	0.774	SYNONYMOUS_CODING CG30196 UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17028512	2R_17028512_SNP [dm3] 2R_21141007_SNP [dm6]	A	C	1.205e^-4	0.774	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	16003528	3R_16003528_SNP [dm3] 3R_20177806_SNP [dm6]	G	A	1.216e^-4	0.774	INTERGENIC
3L	9873427	3L_9873427_SNP [dm3] 3L_9880327_SNP [dm6]	A	G	1.217e^-4	0.774	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
X	10868903	X_10868903_SNP [dm3] X_10974870_SNP [dm6]	A	G	1.218e^-4	0.774	INTRON CG42339
X	4091094	X_4091094_DEL [dm3] X_4197061_DEL [dm6]	AAA	A	1.222e^-4	0.774	INTRON Fas2
2L	4147037	2L_4147037_SNP [dm3] 2L_4147037_SNP [dm6]	A	T	1.226e^-4	0.774	INTERGENIC
3R	9881211	3R_9881211_SNP [dm3] 3R_14055489_SNP [dm6]	A	C	1.232e^-4	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15903063	2R_15903063_SNP [dm3] 2R_20015558_SNP [dm6]	A	C	1.247e^-4	0.774	DOWNSTREAM CR44629 & 1 other INTERGENIC
2R	7408586	2R_7408586_SNP [dm3] 2R_11521081_SNP [dm6]	C	T	1.250e^-4	0.774	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24444894	3R_24444894_SNP [dm3] 3R_28619172_SNP [dm6]	A	G	1.255e^-4	0.774	INTRON CG10011
3R	7321697	3R_7321697_SNP [dm3] 3R_11495975_SNP [dm6]	C	T	1.256e^-4	0.774	INTERGENIC
2R	3079481	2R_3079481_SNP [dm3] 2R_7191976_SNP [dm6]	T	G	1.256e^-4	0.774	INTRON pk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13948880	3R_13948880_SNP [dm3] 3R_18123158_SNP [dm6]	T	C	1.262e^-4	0.774	INTRON sr	TF binding site mE1_TFBS_inv
3L	11276895	3L_11276895_SNP [dm3] 3L_11283795_SNP [dm6]	A	T	1.262e^-4	0.774	UPSTREAM CR45404 INTERGENIC
X	4513872	X_4513872_INS [dm3] X_4619839_INS [dm6]	CG	ATCTCTTATT	1.264e^-4	0.774	INTRON peb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	22332583	X_22332583_SNP [dm3] X_22930747_SNP [dm6]	C	G	1.264e^-4	0.774	INTERGENIC
2R	11339584	2R_11339584_SNP [dm3] 2R_15452079_SNP [dm6]	G	C	1.267e^-4	0.774	INTRON CG43729
3R	6105689	3R_6105689_SNP [dm3] 3R_10279967_SNP [dm6]	G	A	1.270e^-4	0.774	INTRON CG43143
3L	2643105	3L_2643105_DEL [dm3] 3L_2643105_DEL [dm6]	TAATAT	T	1.271e^-4	0.774	INTRON CG14949
2L	1867630	2L_1867630_SNP [dm3] 2L_1867630_SNP [dm6]	T	A	1.279e^-4	0.774	INTRON CG31663
2R	15906467	2R_15906467_SNP [dm3] 2R_20018962_SNP [dm6]	T	C	1.283e^-4	0.774	INTERGENIC
X	12798502	X_12798502_SNP [dm3] X_12904469_SNP [dm6]	C	T	1.284e^-4	0.774	SYNONYMOUS_CODING CG4404 UPSTREAM CG4407	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16202346	3L_16202346_SNP [dm3] 3L_16209246_SNP [dm6]	C	T	1.284e^-4	0.774	INTERGENIC	TF binding site mE1_TFBS_cad
2R	16864005	2R_16864005_SNP [dm3] 2R_20976500_SNP [dm6]	A	T	1.292e^-4	0.776	UPSTREAM CG9344 INTRON CG34115	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	19719350	2R_19719350_SNP [dm3] 2R_23831827_SNP [dm6]	T	G	1.296e^-4	0.776	INTRON CG5549
X	22332315	X_22332315_SNP [dm3] X_22930479_SNP [dm6]	C	A	1.301e^-4	0.776	INTERGENIC
X	6451166	X_6451166_SNP [dm3] X_6557133_SNP [dm6]	C	T	1.312e^-4	0.776	SYNONYMOUS_CODING CG34417 INTRON CG34417
3L	14057292	3L_14057292_SNP [dm3] 3L_14064192_SNP [dm6]	C	T	1.312e^-4	0.776	INTRON CG32138	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	412023	3L_412023_SNP [dm3] 3L_412023_SNP [dm6]	G	T	1.315e^-4	0.776	INTERGENIC
3R	4415784	3R_4415784_SNP [dm3] 3R_8590062_SNP [dm6]	C	T	1.322e^-4	0.776	INTRON 5-HT2B	TF binding site mE1_TFBS_cad
3R	4415796	3R_4415796_SNP [dm3] 3R_8590074_SNP [dm6]	C	A	1.322e^-4	0.776	INTRON 5-HT2B	TF binding site mE1_TFBS_cad
3R	4415773	3R_4415773_SNP [dm3] 3R_8590051_SNP [dm6]	G	T	1.327e^-4	0.776	INTRON 5-HT2B	TF binding site mE1_TFBS_cad
3R	15767069	3R_15767069_SNP [dm3] 3R_19941347_SNP [dm6]	G	A	1.328e^-4	0.776	INTRON Hs6st
2L	1210136	2L_1210136_SNP [dm3] 2L_1210136_SNP [dm6]	T	A	1.341e^-4	0.781	INTERGENIC
2L	7922249	2L_7922249_SNP [dm3] 2L_7922249_SNP [dm6]	G	A	1.348e^-4	0.781	INTRON Snoo
2R	6798005	2R_6798005_SNP [dm3] 2R_10910500_SNP [dm6]	C	T	1.352e^-4	0.781	DOWNSTREAM Obp47a INTERGENIC
3L	14556127	3L_14556127_SNP [dm3] 3L_14563027_SNP [dm6]	G	T	1.362e^-4	0.781	DOWNSTREAM CG34039 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1
2R	14271043	2R_14271043_DEL [dm3] 2R_18383538_DEL [dm6]	TAATGTCTTC	T	1.363e^-4	0.781	UPSTREAM IM1 & 1 other INTERGENIC
2R	9806476	2R_9806476_SNP [dm3] 2R_13918971_SNP [dm6]	G	T	1.363e^-4	0.781	INTRON shot	TF binding site mE1_TFBS_Trl
3L	743993	3L_743993_SNP [dm3] 3L_743993_SNP [dm6]	T	C	1.366e^-4	0.781	UPSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9147034	2R_9147034_SNP [dm3] 2R_13259529_SNP [dm6]	G	T	1.371e^-4	0.781	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3R	6253185	3R_6253185_SNP [dm3] 3R_10427463_SNP [dm6]	G	C	1.383e^-4	0.783	INTERGENIC
X	10030942	X_10030942_SNP [dm3] X_10136909_SNP [dm6]	C	T	1.399e^-4	0.783	INTRON CR44894 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21344585	3R_21344585_SNP [dm3] 3R_25518863_SNP [dm6]	G	T	1.400e^-4	0.783	INTRON msi	TF binding site mE1_TFBS_Trl
2L	8602199	2L_8602199_SNP [dm3] 2L_8602199_SNP [dm6]	A	C	1.407e^-4	0.783	INTRON Sema-1a
X	9721384	X_9721384_DEL [dm3] X_9827351_DEL [dm6]	AA	A	1.413e^-4	0.783	INTRON CG32698
X	21183165	X_21183165_SNP [dm3] X_21312138_SNP [dm6]	T	A	1.416e^-4	0.783	SYNONYMOUS_CODING CG1801
3L	712348	3L_712348_SNP [dm3] 3L_712348_SNP [dm6]	G	T	1.418e^-4	0.783	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	7611943	3L_7611943_SNP [dm3] 3L_7618843_SNP [dm6]	G	A	1.420e^-4	0.783	INTRON CG33275
2R	19719423	2R_19719423_SNP [dm3] 2R_23831900_SNP [dm6]	A	G	1.421e^-4	0.783	INTRON CG5549
3L	1103303	3L_1103303_INS [dm3] 3L_1103303_INS [dm6]	A	AACCGAT	1.422e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	27867697	3R_27867697_INS [dm3] 3R_32041975_INS [dm6]	CCA	AGTGGTGAGTGGC...	1.433e^-4	0.783	INTERGENIC
2R	18475324	2R_18475324_DEL [dm3] 2R_22587819_DEL [dm6]	GA	G	1.437e^-4	0.783	INTRON dnr1
2R	11340700	2R_11340700_SNP [dm3] 2R_15453195_SNP [dm6]	T	G	1.438e^-4	0.783	INTRON CG43729
X	6451181	X_6451181_SNP [dm3] X_6557148_SNP [dm6]	A	G	1.443e^-4	0.783	SYNONYMOUS_CODING CG34417 INTRON CG34417
2L	12923423	2L_12923423_SNP [dm3] 2L_12923423_SNP [dm6]	T	G	1.448e^-4	0.783	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
3R	16890254	3R_16890254_SNP [dm3] 3R_21064532_SNP [dm6]	A	C	1.453e^-4	0.783	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3L	15757612	3L_15757612_SNP [dm3] 3L_15764512_SNP [dm6]	G	T	1.454e^-4	0.783	INTERGENIC
2R	14271079	2R_14271079_MNP [dm3] 2R_18383574_MNP [dm6]	ACA	CAG	1.458e^-4	0.783	UPSTREAM IM1 & 2 others INTERGENIC
X	6451169	X_6451169_SNP [dm3] X_6557136_SNP [dm6]	A	T	1.460e^-4	0.783	SYNONYMOUS_CODING CG34417 INTRON CG34417
X	15413677	X_15413677_SNP [dm3] X_15519644_SNP [dm6]	C	G	1.477e^-4	0.783	INTRON Ac13E
2R	13555652	2R_13555652_SNP [dm3] 2R_17668147_SNP [dm6]	C	A	1.485e^-4	0.783	SYNONYMOUS_CODING eIF3-S8	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12050383	2R_12050383_SNP [dm3] 2R_16162878_SNP [dm6]	C	T	1.490e^-4	0.783	INTRON lbk
3R	22618986	3R_22618986_SNP [dm3] 3R_26793264_SNP [dm6]	A	T	1.490e^-4	0.783	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	7624591	X_7624591_SNP [dm3] X_7730558_SNP [dm6]	G	A	1.492e^-4	0.783	NON_SYNONYMOUS_CODING CG12155	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18279643	X_18279643_DEL [dm3] X_18385610_DEL [dm6]	AC	G	1.500e^-4	0.783	UPSTREAM betaCOP INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16890805	3R_16890805_SNP [dm3] 3R_21065083_SNP [dm6]	A	C	1.505e^-4	0.783	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
2R	14086288	2R_14086288_SNP [dm3] 2R_18198783_SNP [dm6]	A	C	1.509e^-4	0.783	INTERGENIC
2R	9147422	2R_9147422_SNP [dm3] 2R_13259917_SNP [dm6]	A	T	1.510e^-4	0.783	UPSTREAM CG42319 INTERGENIC
3R	18478641	3R_18478641_SNP [dm3] 3R_22652919_SNP [dm6]	G	T	1.512e^-4	0.783	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1167757	3L_1167757_SNP [dm3] 3L_1167757_SNP [dm6]	C	T	1.516e^-4	0.783	INTRON bab2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13769160	2R_13769160_SNP [dm3] 2R_17881655_SNP [dm6]	G	T	1.519e^-4	0.783	NON_SYNONYMOUS_CODING CG30110 INTRON Elk
3R	22141451	3R_22141451_SNP [dm3] 3R_26315729_SNP [dm6]	C	T	1.520e^-4	0.783	INTERGENIC
2R	11530467	2R_11530467_SNP [dm3] 2R_15642962_SNP [dm6]	T	A	1.520e^-4	0.783	INTRON CG42524
X	19873291	X_19873291_INS [dm3] X_19979258_INS [dm6]	T	TTGATGT	1.523e^-4	0.783	INTERGENIC
X	5123133	X_5123133_SNP [dm3] X_5229100_SNP [dm6]	A	G	1.525e^-4	0.783	INTRON CG15465 & 1 other
3R	15325848	3R_15325848_SNP [dm3] 3R_19500126_SNP [dm6]	C	T	1.526e^-4	0.783	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	14344624	3R_14344624_SNP [dm3] 3R_18518902_SNP [dm6]	C	G	1.539e^-4	0.783	INTRON fru
3L	741724	3L_741724_INS [dm3] 3L_741724_INS [dm6]	C	CGC	1.542e^-4	0.783	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	22134371	3R_22134371_SNP [dm3] 3R_26308649_SNP [dm6]	G	A	1.545e^-4	0.783	INTERGENIC
3L	14556164	3L_14556164_SNP [dm3] 3L_14563064_SNP [dm6]	T	G	1.556e^-4	0.783	DOWNSTREAM CG34039 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1
3L	14556133	3L_14556133_SNP [dm3] 3L_14563033_SNP [dm6]	T	A	1.563e^-4	0.783	DOWNSTREAM CG34039 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1
X	14842540	X_14842540_SNP [dm3] X_14948507_SNP [dm6]	T	C	1.566e^-4	0.783	INTRON pdgy	TF binding site mE1_TFBS_HSA
3R	10840151	3R_10840151_SNP [dm3] 3R_15014429_SNP [dm6]	T	A	1.585e^-4	0.783	UPSTREAM CG14861 INTERGENIC
3R	10435085	3R_10435085_SNP [dm3] 3R_14609363_SNP [dm6]	G	T	1.603e^-4	0.783	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	15264242	X_15264242_SNP [dm3] X_15370209_SNP [dm6]	T	C	1.604e^-4	0.783	INTRON acj6
2R	18542253	2R_18542253_SNP [dm3] 2R_22654748_SNP [dm6]	A	T	1.615e^-4	0.783	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG30196 & 2 others INTERGENIC	TF binding site mE1_TFBS_cad
X	10443026	X_10443026_SNP [dm3] X_10548993_SNP [dm6]	C	T	1.620e^-4	0.783	INTRON spri
3R	15325911	3R_15325911_SNP [dm3] 3R_19500189_SNP [dm6]	A	C	1.621e^-4	0.783	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	2690048	X_2690048_SNP [dm3] X_2796015_SNP [dm6]	A	C	1.622e^-4	0.783	INTRON kirre & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	18260542	X_18260542_SNP [dm3] X_18366509_SNP [dm6]	G	T	1.623e^-4	0.783	START_GAINED CrebB UTR_5_PRIME CrebB UPSTREAM CrebB	TF binding site BDTNP1_TFBS_dl
3R	10875304	3R_10875304_INS [dm3] 3R_15049582_INS [dm6]	ACC	TATGTA	1.628e^-4	0.783	INTERGENIC
3L	14556145	3L_14556145_SNP [dm3] 3L_14563045_SNP [dm6]	A	G	1.630e^-4	0.783	DOWNSTREAM CG34039 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1
3L	19472074	3L_19472074_SNP [dm3] 3L_19478974_SNP [dm6]	G	A	1.631e^-4	0.783	UPSTREAM CR32207 DOWNSTREAM CR42842 INTERGENIC
3R	18753175	3R_18753175_SNP [dm3] 3R_22927453_SNP [dm6]	A	C	1.633e^-4	0.783	INTRON klg
3L	712385	3L_712385_DEL [dm3] 3L_712385_DEL [dm6]	TA	T	1.637e^-4	0.783	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	4556696	3L_4556696_SNP [dm3] 3L_4556696_SNP [dm6]	T	A	1.645e^-4	0.783	UPSTREAM CG42540 INTRON CG42540
3L	7080571	3L_7080571_SNP [dm3] 3L_7087471_SNP [dm6]	C	A	1.674e^-4	0.783	UPSTREAM Cpr65Ea DOWNSTREAM Cpr65Eb INTERGENIC	TF binding site mE1_TFBS_inv
2R	16786743	2R_16786743_SNP [dm3] 2R_20899238_SNP [dm6]	T	C	1.677e^-4	0.783	DOWNSTREAM CR43160 INTRON otp	regulatory region REDfly_CRMs
3L	16983323	3L_16983323_SNP [dm3] 3L_16990223_SNP [dm6]	A	G	1.678e^-4	0.783	INTRON Exn
3L	11789578	3L_11789578_SNP [dm3] 3L_11796478_SNP [dm6]	G	A	1.684e^-4	0.783	SYNONYMOUS_CODING Klp68D	TF binding site mE1_TFBS_sens
3L	11532947	3L_11532947_SNP [dm3] 3L_11539847_SNP [dm6]	A	G	1.694e^-4	0.783	INTRON Mob2
3L	3680456	3L_3680456_SNP [dm3] 3L_3680456_SNP [dm6]	G	T	1.701e^-4	0.783	INTERGENIC	TF binding site mE1_TFBS_cad
2L	9445125	2L_9445125_SNP [dm3] 2L_9445125_SNP [dm6]	T	C	1.709e^-4	0.783	INTRON numb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15401423	3L_15401423_SNP [dm3] 3L_15408323_SNP [dm6]	A	T	1.713e^-4	0.783	DOWNSTREAM CG33259 INTERGENIC
3R	25759599	3R_25759599_SNP [dm3] 3R_29933877_SNP [dm6]	C	T	1.716e^-4	0.783	NON_SYNONYMOUS_CODING CG42557 START_GAINED CG42558 UTR_5_PRIME CG42558 UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3699344	3L_3699344_SNP [dm3] 3L_3699344_SNP [dm6]	A	G	1.718e^-4	0.783	INTERGENIC
2L	20593831	2L_20593831_SNP [dm3] 2L_20593831_SNP [dm6]	G	C	1.722e^-4	0.783	INTRON CR44909
3R	25799122	3R_25799122_SNP [dm3] 3R_29973400_SNP [dm6]	G	C	1.726e^-4	0.783	INTERGENIC
3L	391184	3L_391184_SNP [dm3] 3L_391184_SNP [dm6]	C	A	1.731e^-4	0.783	DOWNSTREAM CR45378 INTRON trh
3R	16889996	3R_16889996_SNP [dm3] 3R_21064274_SNP [dm6]	T	C	1.736e^-4	0.783	UPSTREAM AnxB9 INTRON Cortactin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	1103308	3L_1103308_SNP [dm3] 3L_1103308_SNP [dm6]	A	T	1.745e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	4091100	X_4091100_SNP [dm3] X_4197067_SNP [dm6]	G	C	1.747e^-4	0.783	INTRON Fas2
2R	13556727	2R_13556727_SNP [dm3] 2R_17669222_SNP [dm6]	A	T	1.751e^-4	0.783	UTR_3_PRIME eIF3-S8 UPSTREAM CG30108 & 1 other DOWNSTREAM eIF3-S8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
X	6952669	X_6952669_DEL [dm3] X_7058636_DEL [dm6]	TGACCTATGGGCATACA...	T	1.756e^-4	0.783	INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
X	2689994	X_2689994_SNP [dm3] X_2795961_SNP [dm6]	G	A	1.759e^-4	0.783	INTRON kirre & 1 other	regulatory region REDfly_CRMs
X	2690011	X_2690011_SNP [dm3] X_2795978_SNP [dm6]	G	A	1.759e^-4	0.783	INTRON kirre & 1 other	regulatory region REDfly_CRMs
X	2690031	X_2690031_SNP [dm3] X_2795998_SNP [dm6]	A	G	1.759e^-4	0.783	INTRON kirre & 1 other	regulatory region REDfly_CRMs
X	9007178	X_9007178_SNP [dm3] X_9113145_SNP [dm6]	T	A	1.768e^-4	0.783	INTRON AP-1gamma
3R	27129490	3R_27129490_SNP [dm3] 3R_31303768_SNP [dm6]	A	G	1.774e^-4	0.783	SYNONYMOUS_CODING CG11340	TF binding site mE1_TFBS_sens
2R	10998554	2R_10998554_INS [dm3] 2R_15111049_INS [dm6]	A	ACCATAAGAACCACTAATGG...	1.774e^-4	0.783	INTERGENIC
2L	19836530	2L_19836530_SNP [dm3] 2L_19836530_SNP [dm6]	A	G	1.781e^-4	0.783	INTRON sick	TF binding site mE1_TFBS_cad
2R	12112716	2R_12112716_SNP [dm3] 2R_16225211_SNP [dm6]	A	G	1.783e^-4	0.783	UTR_5_PRIME CG15706
2R	9147155	2R_9147155_SNP [dm3] 2R_13259650_SNP [dm6]	A	T	1.784e^-4	0.783	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3L	11168307	3L_11168307_SNP [dm3] 3L_11175207_SNP [dm6]	T	A	1.786e^-4	0.783	INTRON CG14142
3R	5963561	3R_5963561_SNP [dm3] 3R_10137839_SNP [dm6]	T	C	1.788e^-4	0.783	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	7025296	2L_7025296_SNP [dm3] 2L_7025296_SNP [dm6]	C	A	1.788e^-4	0.783	NON_SYNONYMOUS_CODING CG31908	TF binding site mE1_TFBS_cad
2R	10998575	2R_10998575_SNP [dm3] 2R_15111070_SNP [dm6]	T	G	1.791e^-4	0.783	INTERGENIC
2R	15838900	2R_15838900_SNP [dm3] 2R_19951395_SNP [dm6]	C	T	1.800e^-4	0.783	UTR_5_PRIME CG10822
3L	5892565	3L_5892565_SNP [dm3] 3L_5899465_SNP [dm6]	C	T	1.800e^-4	0.783	UPSTREAM CG32409 DOWNSTREAM CG5592 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	15213703	3L_15213703_SNP [dm3] 3L_15220603_SNP [dm6]	C	T	1.802e^-4	0.783	INTERGENIC
3R	18739168	3R_18739168_SNP [dm3] 3R_22913446_SNP [dm6]	A	T	1.804e^-4	0.783	INTRON klg
3L	14079700	3L_14079700_SNP [dm3] 3L_14086600_SNP [dm6]	G	T	1.808e^-4	0.783	DOWNSTREAM CG8100 INTERGENIC
2L	16183859	2L_16183859_DEL [dm3] 2L_16183859_DEL [dm6]	TT	T	1.813e^-4	0.783	INTRON Ca-alpha1D
3L	17665322	3L_17665322_SNP [dm3] 3L_17672222_SNP [dm6]	T	C	1.816e^-4	0.783	INTRON CG34251
3R	18909753	3R_18909753_SNP [dm3] 3R_23084031_SNP [dm6]	G	A	1.826e^-4	0.783	INTRON CG13830	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14815037	3L_14815037_SNP [dm3] 3L_14821937_SNP [dm6]	A	C	1.827e^-4	0.783	INTRON CG17839
2R	10991461	2R_10991461_SNP [dm3] 2R_15103956_SNP [dm6]	C	G	1.830e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	4308047	3R_4308047_SNP [dm3] 3R_8482325_SNP [dm6]	G	T	1.832e^-4	0.783	INTERGENIC
3L	4556835	3L_4556835_SNP [dm3] 3L_4556835_SNP [dm6]	T	C	1.838e^-4	0.783	UPSTREAM CG42540 INTRON CG42540
2R	11251034	2R_11251034_INS [dm3] 2R_15363529_INS [dm6]	A	ATA	1.841e^-4	0.783	INTRON unc-5
X	3110621	X_3110621_SNP [dm3] X_3216588_SNP [dm6]	G	C	1.843e^-4	0.783	INTRON dnc
3L	14835301	3L_14835301_SNP [dm3] 3L_14842201_SNP [dm6]	T	A	1.844e^-4	0.783	INTRON CG17839
3L	10915007	3L_10915007_SNP [dm3] 3L_10921907_SNP [dm6]	G	A	1.845e^-4	0.783	INTERGENIC
2L	2660003	2L_2660003_SNP [dm3] 2L_2660003_SNP [dm6]	T	A	1.847e^-4	0.783	INTERGENIC
3L	19429697	3L_19429697_SNP [dm3] 3L_19436597_SNP [dm6]	C	G	1.848e^-4	0.783	INTERGENIC
2R	13557062	2R_13557062_SNP [dm3] 2R_17669557_SNP [dm6]	T	G	1.852e^-4	0.783	SYNONYMOUS_CODING CG30108 UPSTREAM CG30109 DOWNSTREAM eIF3-S8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
2R	10998591	2R_10998591_SNP [dm3] 2R_15111086_SNP [dm6]	G	T	1.855e^-4	0.783	INTERGENIC
2R	10998597	2R_10998597_SNP [dm3] 2R_15111092_SNP [dm6]	T	C	1.855e^-4	0.783	INTERGENIC
2R	10998602	2R_10998602_SNP [dm3] 2R_15111097_SNP [dm6]	A	T	1.855e^-4	0.783	INTERGENIC
2R	3078631	2R_3078631_DEL [dm3] 2R_7191126_DEL [dm6]	TACT	T	1.855e^-4	0.783	INTRON pk	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
2L	3437649	2L_3437649_SNP [dm3] 2L_3437649_SNP [dm6]	A	T	1.855e^-4	0.783	INTERGENIC
3L	14835275	3L_14835275_INS [dm3] 3L_14842175_INS [dm6]	T	TTGCAA	1.859e^-4	0.783	INTRON CG17839
3L	19130240	3L_19130240_SNP [dm3] 3L_19137140_SNP [dm6]	T	A	1.864e^-4	0.783	INTRON CG14082
2R	14452462	2R_14452462_SNP [dm3] 2R_18564957_SNP [dm6]	A	C	1.864e^-4	0.783	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	712376	3L_712376_SNP [dm3] 3L_712376_SNP [dm6]	G	A	1.867e^-4	0.783	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2L	21849370	2L_21849370_SNP [dm3] 2L_21849370_SNP [dm6]	C	T	1.868e^-4	0.783	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2646310	3L_2646310_SNP [dm3] 3L_2646310_SNP [dm6]	T	C	1.872e^-4	0.783	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14395022	3R_14395022_SNP [dm3] 3R_18569300_SNP [dm6]	G	A	1.879e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	4624701	2L_4624701_SNP [dm3] 2L_4624701_SNP [dm6]	C	T	1.888e^-4	0.783	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9446671	2L_9446671_SNP [dm3] 2L_9446671_SNP [dm6]	A	C	1.891e^-4	0.783	INTRON numb	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	15355720	2L_15355720_SNP [dm3] 2L_15355720_SNP [dm6]	T	G	1.893e^-4	0.783	INTERGENIC
2R	10998561	2R_10998561_INS [dm3] 2R_15111056_INS [dm6]	T	TCTATC	1.895e^-4	0.783	INTERGENIC
2L	2045972	2L_2045972_SNP [dm3] 2L_2045972_SNP [dm6]	G	A	1.896e^-4	0.783	NON_SYNONYMOUS_CODING Kebab UPSTREAM CR45298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19873187	X_19873187_INS [dm3] X_19979154_INS [dm6]	A	ATTTTCTATTAAGAGATAT...	1.897e^-4	0.783	INTERGENIC
3L	1408391	3L_1408391_SNP [dm3] 3L_1408391_SNP [dm6]	T	C	1.910e^-4	0.783	INTRON Ptp61F
2L	4292764	2L_4292764_SNP [dm3] 2L_4292764_SNP [dm6]	T	C	1.916e^-4	0.783	INTRON tutl
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	1.922e^-4	0.783	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11708590	3L_11708590_SNP [dm3] 3L_11715490_SNP [dm6]	G	A	1.922e^-4	0.783	UPSTREAM CG14132 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	20685197	2L_20685197_SNP [dm3] 2L_20685197_SNP [dm6]	T	C	1.922e^-4	0.783	UTR_3_PRIME Hr38
X	20262267	X_20262267_SNP [dm3] X_20391240_SNP [dm6]	A	G	1.924e^-4	0.783	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22109944	3R_22109944_SNP [dm3] 3R_26284222_SNP [dm6]	T	G	1.927e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	12282058	2R_12282058_SNP [dm3] 2R_16394553_SNP [dm6]	G	A	1.928e^-4	0.783	INTRON Sema-2b
X	3377694	X_3377694_SNP [dm3] X_3483661_SNP [dm6]	G	A	1.932e^-4	0.783	SYNONYMOUS_CODING CG10802 DOWNSTREAM CG14270 INTRON CR44999	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	14678270	2R_14678270_SNP [dm3] 2R_18790765_SNP [dm6]	T	C	1.938e^-4	0.783	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9463855	2L_9463855_SNP [dm3] 2L_9463855_SNP [dm6]	C	T	1.951e^-4	0.783	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_kn
2R	6606992	2R_6606992_SNP [dm3] 2R_10719487_SNP [dm6]	A	T	1.966e^-4	0.783	INTRON stan
2R	10998606	2R_10998606_SNP [dm3] 2R_15111101_SNP [dm6]	A	C	1.975e^-4	0.783	INTERGENIC
X	5702213	X_5702213_SNP [dm3] X_5808180_SNP [dm6]	T	G	1.980e^-4	0.783	UPSTREAM Prosbeta2R1 INTERGENIC
3L	10279902	3L_10279902_SNP [dm3] 3L_10286802_SNP [dm6]	A	G	1.983e^-4	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	21060294	2R_21060294_SNP [dm3] 2R_25172771_SNP [dm6]	A	T	1.985e^-4	0.783	UPSTREAM Sfp60F DOWNSTREAM PebII INTERGENIC
2L	4596035	2L_4596035_SNP [dm3] 2L_4596035_SNP [dm6]	T	A	1.987e^-4	0.783	UPSTREAM dp INTRON dp	TF binding site mE1_TFBS_HSA
3R	9823760	3R_9823760_SNP [dm3] 3R_13998038_SNP [dm6]	T	C	1.990e^-4	0.783	INTRON rdx	TF binding site mE1_TFBS_HSA
3R	25759471	3R_25759471_SNP [dm3] 3R_29933749_SNP [dm6]	T	A	1.997e^-4	0.783	SYNONYMOUS_CODING CG42557 UTR_5_PRIME CG42558 UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24416328	3R_24416328_SNP [dm3] 3R_28590606_SNP [dm6]	C	T	2.000e^-4	0.783	EXON MRE23	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	4712167	3L_4712167_SNP [dm3] 3L_4712167_SNP [dm6]	G	A	2.004e^-4	0.783	INTRON RhoGEF64C
3R	17347334	3R_17347334_SNP [dm3] 3R_21521612_SNP [dm6]	C	A	2.005e^-4	0.783	INTRON CG7956	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	9147218	2R_9147218_SNP [dm3] 2R_13259713_SNP [dm6]	T	A	2.012e^-4	0.783	UPSTREAM CG42319 INTERGENIC
3R	6105630	3R_6105630_SNP [dm3] 3R_10279908_SNP [dm6]	T	A	2.021e^-4	0.783	INTRON CG43143
2R	19297196	2R_19297196_SNP [dm3] 2R_23409673_SNP [dm6]	C	G	2.021e^-4	0.783	INTERGENIC
2R	18418701	2R_18418701_SNP [dm3] 2R_22531196_SNP [dm6]	A	C	2.028e^-4	0.783	INTRON px
2R	18418702	2R_18418702_SNP [dm3] 2R_22531197_SNP [dm6]	C	A	2.028e^-4	0.783	INTRON px
2L	21802210	2L_21802210_SNP [dm3] 2L_21802210_SNP [dm6]	G	A	2.038e^-4	0.783	INTERGENIC
3L	743013	3L_743013_SNP [dm3] 3L_743013_SNP [dm6]	G	A	2.043e^-4	0.783	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	3290362	X_3290362_SNP [dm3] X_3396329_SNP [dm6]	T	A	2.044e^-4	0.783	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7617541	X_7617541_SNP [dm3] X_7723508_SNP [dm6]	C	A	2.046e^-4	0.783	SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	20335590	X_20335590_SNP [dm3] X_20464563_SNP [dm6]	G	A	2.046e^-4	0.783	INTRON CG32506
2R	6791093	2R_6791093_SNP [dm3] 2R_10903588_SNP [dm6]	C	T	2.051e^-4	0.783	START_GAINED CG12943 UTR_5_PRIME CG12943
3R	17347161	3R_17347161_SNP [dm3] 3R_21521439_SNP [dm6]	C	T	2.052e^-4	0.783	INTRON CG7956	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	1561196	3L_1561196_SNP [dm3] 3L_1561196_SNP [dm6]	G	T	2.054e^-4	0.783	NON_SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
X	21063578	X_21063578_SNP [dm3] X_21192551_SNP [dm6]	G	A	2.055e^-4	0.783	UPSTREAM CG14579 INTERGENIC
3L	11606033	3L_11606033_SNP [dm3] 3L_11612933_SNP [dm6]	A	C	2.055e^-4	0.783	NON_SYNONYMOUS_CODING Muc68Ca
3R	13600203	3R_13600203_SNP [dm3] 3R_17774481_SNP [dm6]	C	T	2.061e^-4	0.783	UTR_5_PRIME CG43102 INTRON CG43102
3R	13600449	3R_13600449_SNP [dm3] 3R_17774727_SNP [dm6]	C	T	2.061e^-4	0.783	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl
2L	16957224	2L_16957224_SNP [dm3] 2L_16957224_SNP [dm6]	A	G	2.063e^-4	0.783	INTERGENIC
2L	10129257	2L_10129257_SNP [dm3] 2L_10129257_SNP [dm6]	C	A	2.064e^-4	0.783	INTRON CG44153
2R	5690915	2R_5690915_INS [dm3] 2R_9803410_INS [dm6]	G	GCG	2.066e^-4	0.783	INTRON CG1688
2R	4953988	2R_4953988_SNP [dm3] 2R_9066483_SNP [dm6]	T	C	2.077e^-4	0.784	INTRON ana	regulatory region REDfly_CRMs
2R	6804120	2R_6804120_SNP [dm3] 2R_10916615_SNP [dm6]	C	T	2.077e^-4	0.784	INTERGENIC
X	12600147	X_12600147_SNP [dm3] X_12706114_SNP [dm6]	C	A	2.090e^-4	0.785	UTR_5_PRIME CG15725 INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19873199	X_19873199_INS [dm3] X_19979166_INS [dm6]	T	TCTGTAGTT	2.097e^-4	0.785	INTERGENIC
2L	8447278	2L_8447278_SNP [dm3] 2L_8447278_SNP [dm6]	T	G	2.098e^-4	0.785	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	19733007	2L_19733007_SNP [dm3] 2L_19733007_SNP [dm6]	C	A	2.099e^-4	0.785	SYNONYMOUS_CODING CG10462 DOWNSTREAM Lar
X	19239433	X_19239433_SNP [dm3] X_19345400_SNP [dm6]	T	A	2.104e^-4	0.785	INTRON nAChRalpha7
2R	14086277	2R_14086277_SNP [dm3] 2R_18198772_SNP [dm6]	G	A	2.108e^-4	0.785	INTERGENIC
3L	712384	3L_712384_SNP [dm3] 3L_712384_SNP [dm6]	T	C	2.117e^-4	0.785	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	14079483	3L_14079483_DEL [dm3] 3L_14086383_DEL [dm6]	AAAGGAACTCA...	A	2.119e^-4	0.785	DOWNSTREAM CG8100 INTERGENIC
3L	4545922	3L_4545922_SNP [dm3] 3L_4545922_SNP [dm6]	G	A	2.122e^-4	0.785	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	17353856	3R_17353856_SNP [dm3] 3R_21528134_SNP [dm6]	C	T	2.123e^-4	0.785	UTR_3_PRIME CG7956 DOWNSTREAM CG7956	TF binding site BDTNP1_TFBS_slp1
3L	16896011	3L_16896011_SNP [dm3] 3L_16902911_SNP [dm6]	A	T	2.139e^-4	0.785	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo
X	6759897	X_6759897_SNP [dm3] X_6865864_SNP [dm6]	A	T	2.139e^-4	0.785	INTRON CG43736 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9873289	3L_9873289_SNP [dm3] 3L_9880189_SNP [dm6]	C	A	2.146e^-4	0.785	INTRON CG34382	TF binding site mE1_TFBS_chinmo
3R	15072398	3R_15072398_SNP [dm3] 3R_19246676_SNP [dm6]	G	A	2.148e^-4	0.785	UPSTREAM unc79 DOWNSTREAM CG5217 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10998796	2R_10998796_SNP [dm3] 2R_15111291_SNP [dm6]	G	A	2.152e^-4	0.785	INTERGENIC
3L	14389469	3L_14389469_SNP [dm3] 3L_14396369_SNP [dm6]	C	G	2.154e^-4	0.785	INTERGENIC
3L	1042784	3L_1042784_SNP [dm3] 3L_1042784_SNP [dm6]	G	A	2.155e^-4	0.785	INTRON bab1
X	8133270	X_8133270_INS [dm3] X_8239237_INS [dm6]	G	GTAGATG	2.156e^-4	0.785	UTR_3_PRIME sdt
X	15413680	X_15413680_SNP [dm3] X_15519647_SNP [dm6]	A	G	2.163e^-4	0.785	INTRON Ac13E
X	11945085	X_11945085_SNP [dm3] X_12051052_SNP [dm6]	A	T	2.164e^-4	0.785	INTRON CR43960 & 1 other
2L	4933597	2L_4933597_SNP [dm3] 2L_4933597_SNP [dm6]	T	C	2.169e^-4	0.785	SYNONYMOUS_CODING hoe2
3R	6249035	3R_6249035_INS [dm3] 3R_10423313_INS [dm6]	T	TT	2.178e^-4	0.786	INTERGENIC
2R	10998557	2R_10998557_SNP [dm3] 2R_15111052_SNP [dm6]	A	T	2.181e^-4	0.786	INTERGENIC
X	18264650	X_18264650_SNP [dm3] X_18370617_SNP [dm6]	A	T	2.188e^-4	0.787	UPSTREAM CrebB & 1 other INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	14811233	3L_14811233_SNP [dm3] 3L_14818133_SNP [dm6]	C	T	2.192e^-4	0.787	INTRON CG17839
X	18261995	X_18261995_SNP [dm3] X_18367962_SNP [dm6]	C	T	2.194e^-4	0.787	INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	12264143	X_12264143_SNP [dm3] X_12370110_SNP [dm6]	C	A	2.202e^-4	0.787	INTERGENIC
2R	6567949	2R_6567949_SNP [dm3] 2R_10680444_SNP [dm6]	A	C	2.206e^-4	0.787	INTRON stan	TF binding site mE1_TFBS_Trl
3R	15325920	3R_15325920_SNP [dm3] 3R_19500198_SNP [dm6]	T	C	2.207e^-4	0.787	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9776225	2R_9776225_SNP [dm3] 2R_13888720_SNP [dm6]	T	C	2.233e^-4	0.792	NON_SYNONYMOUS_CODING shot INTRON shot
3L	11276747	3L_11276747_SNP [dm3] 3L_11283647_SNP [dm6]	C	T	2.236e^-4	0.792	INTERGENIC
2R	14270956	2R_14270956_DEL [dm3] 2R_18383451_DEL [dm6]	ATTTTT	A	2.241e^-4	0.792	UPSTREAM IM1 & 1 other INTERGENIC
3R	18739202	3R_18739202_SNP [dm3] 3R_22913480_SNP [dm6]	A	T	2.241e^-4	0.792	INTRON klg
3L	3103931	3L_3103931_SNP [dm3] 3L_3103931_SNP [dm6]	T	C	2.243e^-4	0.792	INTRON Cht7
3R	12898355	3R_12898355_SNP [dm3] 3R_17072633_SNP [dm6]	A	G	2.252e^-4	0.792	UTR_5_PRIME Ns1 UPSTREAM mRpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9873577	3L_9873577_SNP [dm3] 3L_9880477_SNP [dm6]	T	C	2.252e^-4	0.792	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
2R	10837352	2R_10837352_SNP [dm3] 2R_14949847_SNP [dm6]	A	G	2.275e^-4	0.798	UPSTREAM aPKC INTRON aPKC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	17345136	3R_17345136_SNP [dm3] 3R_21519414_SNP [dm6]	G	A	2.280e^-4	0.798	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	10998617	2R_10998617_SNP [dm3] 2R_15111112_SNP [dm6]	C	T	2.291e^-4	0.798	INTERGENIC
2L	10482563	2L_10482563_SNP [dm3] 2L_10482563_SNP [dm6]	C	A	2.292e^-4	0.798	NON_SYNONYMOUS_CODING RluA-2 UTR_3_PRIME RluA-2 UPSTREAM Grip75	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	1585958	3L_1585958_SNP [dm3] 3L_1585958_SNP [dm6]	C	T	2.293e^-4	0.798	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_kn mE1_TFBS_Trl
3L	13310278	3L_13310278_SNP [dm3] 3L_13317178_SNP [dm6]	C	G	2.302e^-4	0.798	INTERGENIC
3R	13360239	3R_13360239_INS [dm3] 3R_17534517_INS [dm6]	T	AA	2.306e^-4	0.798	UTR_5_PRIME CG5823 UPSTREAM P5cr-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	17122056	2R_17122056_SNP [dm3] 2R_21234551_SNP [dm6]	C	T	2.318e^-4	0.798	INTRON ASPP
2R	15838903	2R_15838903_SNP [dm3] 2R_19951398_SNP [dm6]	A	C	2.318e^-4	0.798	UTR_5_PRIME CG10822
X	19421607	X_19421607_DEL [dm3] X_19527574_DEL [dm6]	CAC	C	2.319e^-4	0.798	UPSTREAM CoRest INTRON CoRest	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5234075	2R_5234075_SNP [dm3] 2R_9346570_SNP [dm6]	T	G	2.319e^-4	0.798	SYNONYMOUS_CODING Or45a INTRON CG13954 & 1 other	TF binding site mE1_TFBS_chinmo
3L	21483082	3L_21483082_SNP [dm3] 3L_21489982_SNP [dm6]	T	G	2.320e^-4	0.798	NON_SYNONYMOUS_CODING Neu2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11409403	X_11409403_SNP [dm3] X_11515370_SNP [dm6]	A	T	2.325e^-4	0.798	INTRON Drak	TF binding site mE1_TFBS_Kr
3R	22946973	3R_22946973_SNP [dm3] 3R_27121251_SNP [dm6]	C	G	2.332e^-4	0.799	SYNONYMOUS_CODING CG5882 DOWNSTREAM CG6059	TF binding site mE1_TFBS_cad
2R	16253858	2R_16253858_SNP [dm3] 2R_20366353_SNP [dm6]	A	G	2.337e^-4	0.8	INTERGENIC
2R	14647134	2R_14647134_DEL [dm3] 2R_18759629_DEL [dm6]	AG	T	2.350e^-4	0.801	SPLICE_SITE_REGION Jabba INTRON Jabba
2R	18542610	2R_18542610_DEL [dm3] 2R_22655105_DEL [dm6]	GTATTGGGGCTC...	G	2.350e^-4	0.801	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other INTRON CG30196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10998641	2R_10998641_SNP [dm3] 2R_15111136_SNP [dm6]	A	C	2.354e^-4	0.801	INTERGENIC
3L	2646601	3L_2646601_SNP [dm3] 3L_2646601_SNP [dm6]	T	C	2.364e^-4	0.801	UTR_3_PRIME CG1143	TF binding site mE1_TFBS_cad
2L	4933968	2L_4933968_SNP [dm3] 2L_4933968_SNP [dm6]	G	A	2.366e^-4	0.801	INTRON hoe2
2L	4421150	2L_4421150_SNP [dm3] 2L_4421150_SNP [dm6]	G	T	2.366e^-4	0.801	INTRON CG15431
3L	5152409	3L_5152409_DEL [dm3] 3L_5159309_DEL [dm6]	GTG	G	2.388e^-4	0.804	UTR_3_PRIME shep
3R	24829701	3R_24829701_SNP [dm3] 3R_29003979_SNP [dm6]	C	G	2.394e^-4	0.804	INTRON wat
3L	16202254	3L_16202254_SNP [dm3] 3L_16209154_SNP [dm6]	C	T	2.411e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_cad
2L	12896052	2L_12896052_SNP [dm3] 2L_12896052_SNP [dm6]	T	C	2.414e^-4	0.804	INTERGENIC
2L	15281222	2L_15281222_SNP [dm3] 2L_15281222_SNP [dm6]	A	G	2.418e^-4	0.804	DOWNSTREAM CR45349 INTERGENIC
2R	17774715	2R_17774715_SNP [dm3] 2R_21887210_SNP [dm6]	C	T	2.421e^-4	0.804	INTRON Fili
3R	25759468	3R_25759468_SNP [dm3] 3R_29933746_SNP [dm6]	C	T	2.427e^-4	0.804	SYNONYMOUS_CODING CG42557 UTR_5_PRIME CG42558 UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14815465	3L_14815465_SNP [dm3] 3L_14822365_SNP [dm6]	G	A	2.431e^-4	0.804	INTRON CG17839
2R	11327929	2R_11327929_SNP [dm3] 2R_15440424_SNP [dm6]	G	T	2.453e^-4	0.804	INTRON CG43729
2R	9147482	2R_9147482_SNP [dm3] 2R_13259977_SNP [dm6]	A	G	2.459e^-4	0.804	UPSTREAM CG42319 INTERGENIC
3R	14739820	3R_14739820_SNP [dm3] 3R_18914098_SNP [dm6]	T	C	2.462e^-4	0.804	UPSTREAM Xrp1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	14349588	3L_14349588_SNP [dm3] 3L_14356488_SNP [dm6]	G	A	2.472e^-4	0.804	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13990762	3L_13990762_SNP [dm3] 3L_13997662_SNP [dm6]	G	A	2.473e^-4	0.804	NON_SYNONYMOUS_CODING CG17361 DOWNSTREAM CG17359	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13772991	2R_13772991_SNP [dm3] 2R_17885486_SNP [dm6]	C	T	2.473e^-4	0.804	INTRON Elk
X	9536658	X_9536658_SNP [dm3] X_9642625_SNP [dm6]	T	A	2.475e^-4	0.804	INTRON l_1_G0232	TF binding site mE1_TFBS_inv
X	14090881	X_14090881_SNP [dm3] X_14196848_SNP [dm6]	T	C	2.478e^-4	0.804	SYNONYMOUS_CODING yl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8536481	2R_8536481_SNP [dm3] 2R_12648976_SNP [dm6]	T	A	2.488e^-4	0.804	UPSTREAM CG8785 INTERGENIC
2R	13745550	2R_13745550_SNP [dm3] 2R_17858045_SNP [dm6]	A	G	2.491e^-4	0.804	INTRON olf186-F
3R	13469273	3R_13469273_SNP [dm3] 3R_17643551_SNP [dm6]	T	C	2.492e^-4	0.804	INTRON CG43175
2L	10085047	2L_10085047_SNP [dm3] 2L_10085047_SNP [dm6]	G	C	2.493e^-4	0.804	INTRON CG44153
X	8292927	X_8292927_SNP [dm3] X_8398894_SNP [dm6]	T	C	2.499e^-4	0.804	UPSTREAM CG10555 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10991694	2R_10991694_SNP [dm3] 2R_15104189_SNP [dm6]	T	C	2.505e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	18112916	3L_18112916_SNP [dm3] 3L_18119816_SNP [dm6]	A	C	2.507e^-4	0.804	UTR_5_PRIME CG7341 DOWNSTREAM CG32195	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	8222268	X_8222268_SNP [dm3] X_8328235_SNP [dm6]	A	T	2.507e^-4	0.804	INTRON nAChRalpha3
3R	6105532	3R_6105532_SNP [dm3] 3R_10279810_SNP [dm6]	C	T	2.516e^-4	0.804	INTRON CG43143
3L	10464831	3L_10464831_DEL [dm3] 3L_10471731_DEL [dm6]	AA	G	2.522e^-4	0.804	INTERGENIC
X	18262391	X_18262391_INS [dm3] X_18368358_INS [dm6]	G	GG	2.525e^-4	0.804	INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	7327665	2R_7327665_SNP [dm3] 2R_11440160_SNP [dm6]	C	G	2.525e^-4	0.804	INTRON CG7777
2L	2863927	2L_2863927_SNP [dm3] 2L_2863927_SNP [dm6]	C	T	2.526e^-4	0.804	INTRON CG2991	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12497505	3R_12497505_SNP [dm3] 3R_16671783_SNP [dm6]	C	T	2.540e^-4	0.804	INTRON Ubx
3R	19283761	3R_19283761_SNP [dm3] 3R_23458039_SNP [dm6]	A	T	2.547e^-4	0.804	INTRON CG4374
3R	16710155	3R_16710155_SNP [dm3] 3R_20884433_SNP [dm6]	A	G	2.557e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3699414	3L_3699414_SNP [dm3] 3L_3699414_SNP [dm6]	C	T	2.568e^-4	0.804	INTERGENIC
3L	7721690	3L_7721690_SNP [dm3] 3L_7728590_SNP [dm6]	T	G	2.571e^-4	0.804	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
X	9201444	X_9201444_SNP [dm3] X_9307411_SNP [dm6]	T	A	2.572e^-4	0.804	INTERGENIC
3R	4934322	3R_4934322_SNP [dm3] 3R_9108600_SNP [dm6]	C	T	2.572e^-4	0.804	INTRON pum
3R	19325039	3R_19325039_SNP [dm3] 3R_23499317_SNP [dm6]	T	C	2.573e^-4	0.804	INTERGENIC
2L	9444160	2L_9444160_SNP [dm3] 2L_9444160_SNP [dm6]	T	A	2.576e^-4	0.804	INTRON numb
3R	15325833	3R_15325833_INS [dm3] 3R_19500111_INS [dm6]	A	GTACGG	2.577e^-4	0.804	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	21171394	X_21171394_SNP [dm3] X_21300367_SNP [dm6]	C	A	2.578e^-4	0.804	UTR_5_PRIME CG1718
3R	27860036	3R_27860036_DEL [dm3] 3R_32034314_DEL [dm6]	TTGGAGCTGCAAAAAATGAC...	T	2.579e^-4	0.804	INTERGENIC
2R	9147026	2R_9147026_SNP [dm3] 2R_13259521_SNP [dm6]	T	A	2.584e^-4	0.804	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3L	13172987	3L_13172987_INS [dm3] 3L_13179887_INS [dm6]	G	GA	2.584e^-4	0.804	INTERGENIC
3R	14695537	3R_14695537_SNP [dm3] 3R_18869815_SNP [dm6]	C	T	2.594e^-4	0.804	INTERGENIC
3L	14561228	3L_14561228_SNP [dm3] 3L_14568128_SNP [dm6]	T	G	2.595e^-4	0.804	UTR_3_PRIME CG42758
2L	9446658	2L_9446658_SNP [dm3] 2L_9446658_SNP [dm6]	A	C	2.597e^-4	0.804	INTRON numb	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	9446659	2L_9446659_SNP [dm3] 2L_9446659_SNP [dm6]	A	C	2.597e^-4	0.804	INTRON numb	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
3R	16889790	3R_16889790_SNP [dm3] 3R_21064068_SNP [dm6]	T	G	2.598e^-4	0.804	UTR_5_PRIME Cortactin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	11128197	2R_11128197_SNP [dm3] 2R_15240692_SNP [dm6]	C	T	2.600e^-4	0.804	INTRON Fs
2L	17327630	2L_17327630_SNP [dm3] 2L_17327630_SNP [dm6]	C	G	2.610e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10534108	X_10534108_SNP [dm3] X_10640075_SNP [dm6]	A	G	2.623e^-4	0.804	INTRON X11Lbeta
2L	16008929	2L_16008929_SNP [dm3] 2L_16008929_SNP [dm6]	C	T	2.624e^-4	0.804	INTRON beat-Ic	TF binding site mE1_TFBS_HSA
3L	5143626	3L_5143626_SNP [dm3] 3L_5150526_SNP [dm6]	G	A	2.628e^-4	0.804	SYNONYMOUS_CODING Gen DOWNSTREAM Aats-ala-m	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3523992	2L_3523992_SNP [dm3] 2L_3523992_SNP [dm6]	C	A	2.629e^-4	0.804	UTR_5_PRIME Sr-CIV
2R	9715965	2R_9715965_SNP [dm3] 2R_13828460_SNP [dm6]	G	T	2.642e^-4	0.804	UPSTREAM CG6329 INTRON CG6329	TF binding site BDTNP1_TFBS_dl
2L	2707543	2L_2707543_SNP [dm3] 2L_2707543_SNP [dm6]	C	A	2.656e^-4	0.804	INTRON CG31690
3R	4313161	3R_4313161_SNP [dm3] 3R_8487439_SNP [dm6]	G	A	2.662e^-4	0.804	INTERGENIC
3L	4026366	3L_4026366_DEL [dm3] 3L_4026366_DEL [dm6]	ACTA	A	2.664e^-4	0.804	UPSTREAM Gr64a & 1 other INTERGENIC
2R	13786939	2R_13786939_SNP [dm3] 2R_17899434_SNP [dm6]	A	T	2.667e^-4	0.804	INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20029717	2R_20029717_SNP [dm3] 2R_24142194_SNP [dm6]	T	C	2.667e^-4	0.804	INTRON Dat
3L	1585963	3L_1585963_SNP [dm3] 3L_1585963_SNP [dm6]	T	G	2.674e^-4	0.804	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_kn mE1_TFBS_Trl
2R	10991687	2R_10991687_SNP [dm3] 2R_15104182_SNP [dm6]	G	T	2.677e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	4928467	X_4928467_SNP [dm3] X_5034434_SNP [dm6]	T	A	2.679e^-4	0.804	INTRON CR44833
2L	11930045	2L_11930045_SNP [dm3] 2L_11930045_SNP [dm6]	C	T	2.692e^-4	0.804	INTERGENIC
3L	3966428	3L_3966428_SNP [dm3] 3L_3966428_SNP [dm6]	C	A	2.699e^-4	0.804	INTERGENIC
2L	17333597	2L_17333597_SNP [dm3] 2L_17333597_SNP [dm6]	A	G	2.700e^-4	0.804	INTERGENIC
2L	9338748	2L_9338748_SNP [dm3] 2L_9338748_SNP [dm6]	T	C	2.707e^-4	0.804	SYNONYMOUS_CODING Eaat1
2R	14270955	2R_14270955_INS [dm3] 2R_18383450_INS [dm6]	A	AGTATACAAAAAGCAG...	2.709e^-4	0.804	UPSTREAM IM1 & 1 other INTERGENIC
3R	15072981	3R_15072981_SNP [dm3] 3R_19247259_SNP [dm6]	T	C	2.714e^-4	0.804	UTR_3_PRIME CG5217	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	5056508	X_5056508_SNP [dm3] X_5162475_SNP [dm6]	A	G	2.718e^-4	0.804	INTRON rg & 1 other
2L	10085825	2L_10085825_SNP [dm3] 2L_10085825_SNP [dm6]	C	T	2.720e^-4	0.804	INTRON CG44153
2R	13932152	2R_13932152_SNP [dm3] 2R_18044647_SNP [dm6]	T	G	2.723e^-4	0.804	SYNONYMOUS_CODING CG5770 UPSTREAM CG5773
3L	10759040	3L_10759040_SNP [dm3] 3L_10765940_SNP [dm6]	T	C	2.724e^-4	0.804	INTERGENIC
3L	2645491	3L_2645491_SNP [dm3] 3L_2645491_SNP [dm6]	A	T	2.724e^-4	0.804	INTRON CG1143
2L	10229378	2L_10229378_SNP [dm3] 2L_10229378_SNP [dm6]	T	C	2.730e^-4	0.804	INTRON CG5694
X	9816859	X_9816859_DEL [dm3] X_9922826_DEL [dm6]	CC	C	2.733e^-4	0.804	INTERGENIC
3L	5147044	3L_5147044_SNP [dm3] 3L_5153944_SNP [dm6]	C	T	2.737e^-4	0.804	SYNONYMOUS_CODING Srp54k	TF binding site mE1_TFBS_sens
3L	5146943	3L_5146943_SNP [dm3] 3L_5153843_SNP [dm6]	G	A	2.737e^-4	0.804	INTRON Srp54k	TF binding site mE1_TFBS_sens
X	16163210	X_16163210_SNP [dm3] X_16269177_SNP [dm6]	G	A	2.741e^-4	0.804	SYNONYMOUS_CODING kat80
X	9497043	X_9497043_SNP [dm3] X_9603010_SNP [dm6]	G	A	2.753e^-4	0.804	SYNONYMOUS_CODING Gga	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1103305	3L_1103305_SNP [dm3] 3L_1103305_SNP [dm6]	T	G	2.759e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	17345258	3R_17345258_SNP [dm3] 3R_21519536_SNP [dm6]	C	T	2.761e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17345296	3R_17345296_SNP [dm3] 3R_21519574_SNP [dm6]	A	T	2.761e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26618205	3R_26618205_SNP [dm3] 3R_30792483_SNP [dm6]	C	T	2.762e^-4	0.804	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
2R	16253834	2R_16253834_SNP [dm3] 2R_20366329_SNP [dm6]	C	T	2.771e^-4	0.804	INTERGENIC
3L	9661315	3L_9661315_SNP [dm3] 3L_9668215_SNP [dm6]	A	G	2.772e^-4	0.804	INTRON fry	TF binding site mE1_TFBS_cad
3R	17345257	3R_17345257_SNP [dm3] 3R_21519535_SNP [dm6]	T	G	2.775e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11945098	X_11945098_SNP [dm3] X_12051065_SNP [dm6]	T	A	2.776e^-4	0.804	INTRON CR43960 & 1 other
3R	23624603	3R_23624603_SNP [dm3] 3R_27798881_SNP [dm6]	A	C	2.780e^-4	0.804	INTRON CG34353
3L	7938431	3L_7938431_SNP [dm3] 3L_7945331_SNP [dm6]	G	A	2.780e^-4	0.804	DOWNSTREAM CG43880 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5121954	3R_5121954_SNP [dm3] 3R_9296232_SNP [dm6]	A	G	2.783e^-4	0.804	INTRON CG8861
3R	18494639	3R_18494639_SNP [dm3] 3R_22668917_SNP [dm6]	T	G	2.785e^-4	0.804	INTRON CG45058	TF binding site BDTNP1_TFBS_dl
2R	3546744	2R_3546744_SNP [dm3] 2R_7659239_SNP [dm6]	G	A	2.793e^-4	0.804	DOWNSTREAM CG1339 & 1 other INTERGENIC
3R	26480660	3R_26480660_SNP [dm3] 3R_30654938_SNP [dm6]	C	T	2.805e^-4	0.804	INTERGENIC
3L	7133570	3L_7133570_SNP [dm3] 3L_7140470_SNP [dm6]	T	C	2.811e^-4	0.804	SYNONYMOUS_CODING melt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15130796	3R_15130796_SNP [dm3] 3R_19305074_SNP [dm6]	G	A	2.818e^-4	0.804	SYNONYMOUS_CODING Dl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12510094	2R_12510094_SNP [dm3] 2R_16622589_SNP [dm6]	C	T	2.820e^-4	0.804	INTRON CG5065	TF binding site mE1_TFBS_cad
2R	18475339	2R_18475339_SNP [dm3] 2R_22587834_SNP [dm6]	A	C	2.823e^-4	0.804	INTRON dnr1
2R	18475340	2R_18475340_SNP [dm3] 2R_22587835_SNP [dm6]	G	A	2.823e^-4	0.804	INTRON dnr1
2R	4956241	2R_4956241_SNP [dm3] 2R_9068736_SNP [dm6]	T	G	2.823e^-4	0.804	UPSTREAM ana INTRON ana
3L	1629802	3L_1629802_SNP [dm3] 3L_1629802_SNP [dm6]	C	T	2.828e^-4	0.804	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	27100391	3R_27100391_DEL [dm3] 3R_31274669_DEL [dm6]	AA	A	2.830e^-4	0.804	INTERGENIC
2L	17333728	2L_17333728_SNP [dm3] 2L_17333728_SNP [dm6]	G	T	2.839e^-4	0.804	INTERGENIC
X	19871464	X_19871464_SNP [dm3] X_19977431_SNP [dm6]	A	G	2.842e^-4	0.804	INTERGENIC
3L	15401421	3L_15401421_SNP [dm3] 3L_15408321_SNP [dm6]	G	A	2.843e^-4	0.804	DOWNSTREAM CG33259 INTERGENIC
3R	17345268	3R_17345268_SNP [dm3] 3R_21519546_SNP [dm6]	T	C	2.860e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19873194	X_19873194_INS [dm3] X_19979161_INS [dm6]	T	TT	2.860e^-4	0.804	INTERGENIC
3L	20176231	3L_20176231_SNP [dm3] 3L_20183131_SNP [dm6]	T	A	2.860e^-4	0.804	INTRON CG42674	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8892664	X_8892664_SNP [dm3] X_8998631_SNP [dm6]	T	A	2.862e^-4	0.804	INTRON rdgA & 1 other
3R	5129982	3R_5129982_SNP [dm3] 3R_9304260_SNP [dm6]	C	G	2.864e^-4	0.804	INTRON CG8861
2R	11530566	2R_11530566_SNP [dm3] 2R_15643061_SNP [dm6]	T	C	2.865e^-4	0.804	INTRON CG42524
2L	21917509	2L_21917509_SNP [dm3] 2L_21917509_SNP [dm6]	G	T	2.867e^-4	0.804	DOWNSTREAM CG11634 INTRON CG11634
3R	21876370	3R_21876370_SNP [dm3] 3R_26050648_SNP [dm6]	T	G	2.884e^-4	0.804	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2646631	3L_2646631_SNP [dm3] 3L_2646631_SNP [dm6]	T	A	2.885e^-4	0.804	UTR_3_PRIME CG1143 DOWNSTREAM CG1143	TF binding site mE1_TFBS_cad
X	12665748	X_12665748_SNP [dm3] X_12771715_SNP [dm6]	C	T	2.900e^-4	0.804	UTR_3_PRIME CG3812 DOWNSTREAM CG32647 & 1 other
2R	9147435	2R_9147435_SNP [dm3] 2R_13259930_SNP [dm6]	T	A	2.900e^-4	0.804	UPSTREAM CG42319 INTERGENIC
2L	9053262	2L_9053262_SNP [dm3] 2L_9053262_SNP [dm6]	T	A	2.918e^-4	0.804	INTRON CG31708
X	6451143	X_6451143_SNP [dm3] X_6557110_SNP [dm6]	A	C	2.918e^-4	0.804	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
2L	14043664	2L_14043664_SNP [dm3] 2L_14043664_SNP [dm6]	T	C	2.923e^-4	0.804	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17877822	3R_17877822_SNP [dm3] 3R_22052100_SNP [dm6]	C	T	2.923e^-4	0.804	INTRON how	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	7451999	2L_7451999_SNP [dm3] 2L_7451999_SNP [dm6]	G	A	2.928e^-4	0.804	UPSTREAM santa-maria DOWNSTREAM Gr28a INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3L	15693061	3L_15693061_SNP [dm3] 3L_15699961_SNP [dm6]	C	T	2.934e^-4	0.804	UPSTREAM comm2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15213586	3L_15213586_SNP [dm3] 3L_15220486_SNP [dm6]	T	G	2.940e^-4	0.804	INTERGENIC
2R	12392713	2R_12392713_SNP [dm3] 2R_16505208_SNP [dm6]	G	A	2.948e^-4	0.804	INTRON Sema-2a
3L	3910709	3L_3910709_SNP [dm3] 3L_3910709_SNP [dm6]	G	T	2.952e^-4	0.804	UTR_3_PRIME Eip63F-1 UPSTREAM mge DOWNSTREAM Eip63F-1
2L	378373	2L_378373_SNP [dm3] 2L_378373_SNP [dm6]	A	T	2.960e^-4	0.804	UTR_5_PRIME al	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	12325195	2L_12325195_INS [dm3] 2L_12325195_INS [dm6]	A	ACGTAAAGCAAAATATTTTC...	2.965e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10382797	2R_10382797_SNP [dm3] 2R_14495292_SNP [dm6]	A	G	2.966e^-4	0.804	SYNONYMOUS_CODING L	TF binding site mE1_TFBS_cad
3L	10793233	3L_10793233_SNP [dm3] 3L_10800133_SNP [dm6]	A	C	2.966e^-4	0.804	INTERGENIC
3L	1103424	3L_1103424_DEL [dm3] 3L_1103424_DEL [dm6]	CC	C	2.967e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	10895007	X_10895007_SNP [dm3] X_11000974_SNP [dm6]	A	G	2.970e^-4	0.804	INTRON CG42339
2R	13558499	2R_13558499_SNP [dm3] 2R_17670994_SNP [dm6]	A	C	2.976e^-4	0.804	UPSTREAM CR44404 DOWNSTREAM CG30108 & 2 others INTERGENIC
2R	11872555	2R_11872555_SNP [dm3] 2R_15985050_SNP [dm6]	T	C	2.981e^-4	0.804	SYNONYMOUS_CODING Strn-Mlck
3R	26667135	3R_26667135_SNP [dm3] 3R_30841413_SNP [dm6]	A	C	2.989e^-4	0.804	UTR_3_PRIME CG15544	TF binding site mE1_TFBS_cad
X	5120460	X_5120460_SNP [dm3] X_5226427_SNP [dm6]	A	G	2.997e^-4	0.804	INTRON CG15465 & 1 other
3R	25760016	3R_25760016_SNP [dm3] 3R_29934294_SNP [dm6]	A	C	3.010e^-4	0.804	NON_SYNONYMOUS_CODING CG42558 UTR_3_PRIME CG42557 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad
3R	8388326	3R_8388326_SNP [dm3] 3R_12562604_SNP [dm6]	C	T	3.012e^-4	0.804	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
2R	11322522	2R_11322522_SNP [dm3] 2R_15435017_SNP [dm6]	C	A	3.014e^-4	0.804	INTRON CG43729	TF binding site mE1_TFBS_chinmo
2R	14271068	2R_14271068_DEL [dm3] 2R_18383563_DEL [dm6]	TGCTTTT	T	3.023e^-4	0.804	UPSTREAM IM1 & 2 others INTERGENIC
2R	11129015	2R_11129015_SNP [dm3] 2R_15241510_SNP [dm6]	A	G	3.023e^-4	0.804	UTR_5_PRIME Fs
2R	14271060	2R_14271060_SNP [dm3] 2R_18383555_SNP [dm6]	A	T	3.024e^-4	0.804	UPSTREAM IM1 & 1 other INTERGENIC
2R	14271062	2R_14271062_SNP [dm3] 2R_18383557_SNP [dm6]	T	G	3.024e^-4	0.804	UPSTREAM IM1 & 1 other INTERGENIC
X	12266372	X_12266372_SNP [dm3] X_12372339_SNP [dm6]	A	G	3.025e^-4	0.804	UPSTREAM CG2577 INTERGENIC
2L	9501642	2L_9501642_SNP [dm3] 2L_9501642_SNP [dm6]	G	C	3.028e^-4	0.804	INTRON CG33298
3L	1085003	3L_1085003_DEL [dm3] 3L_1085003_DEL [dm6]	AGTTTGGCCG	A	3.029e^-4	0.804	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	15281172	2L_15281172_SNP [dm3] 2L_15281172_SNP [dm6]	G	A	3.036e^-4	0.804	DOWNSTREAM CR45349 INTERGENIC
2L	1231977	2L_1231977_SNP [dm3] 2L_1231977_SNP [dm6]	T	C	3.045e^-4	0.804	INTERGENIC
3R	20347647	3R_20347647_SNP [dm3] 3R_24521925_SNP [dm6]	T	C	3.045e^-4	0.804	UTR_3_PRIME Pp1alpha-96A DOWNSTREAM Pp1alpha-96A & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16840396	2L_16840396_SNP [dm3] 2L_16840396_SNP [dm6]	T	C	3.047e^-4	0.804	UTR_3_PRIME SclA & 1 other INTRON SclA
X	12355297	X_12355297_SNP [dm3] X_12461264_SNP [dm6]	C	A	3.047e^-4	0.804	INTRON Rab40
3R	15045602	3R_15045602_SNP [dm3] 3R_19219880_SNP [dm6]	T	C	3.049e^-4	0.804	INTRON vib
2R	12456228	2R_12456228_SNP [dm3] 2R_16568723_SNP [dm6]	T	C	3.055e^-4	0.804	SYNONYMOUS_CODING CG4945	TF binding site mE1_TFBS_cad
3R	14291727	3R_14291727_SNP [dm3] 3R_18466005_SNP [dm6]	T	A	3.059e^-4	0.804	INTRON fru
X	7897466	X_7897466_SNP [dm3] X_8003433_SNP [dm6]	T	C	3.060e^-4	0.804	INTRON Tbh
2R	15838836	2R_15838836_SNP [dm3] 2R_19951331_SNP [dm6]	G	C	3.069e^-4	0.804	UPSTREAM CG10822 INTERGENIC
3L	3207062	3L_3207062_SNP [dm3] 3L_3207062_SNP [dm6]	C	A	3.074e^-4	0.804	SYNONYMOUS_CODING CG32269 UTR_3_PRIME CG32270 UPSTREAM CG33160 INTRON gry	TF binding site mE1_TFBS_cad
3L	14376089	3L_14376089_SNP [dm3] 3L_14382989_SNP [dm6]	T	G	3.077e^-4	0.804	UTR_3_PRIME CG43120
3R	9306338	3R_9306338_SNP [dm3] 3R_13480616_SNP [dm6]	T	A	3.078e^-4	0.804	INTERGENIC
2R	3972446	2R_3972446_INS [dm3] 2R_8084941_INS [dm6]	C	CATTCATTT	3.078e^-4	0.804	INTRON sut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4292732	2L_4292732_SNP [dm3] 2L_4292732_SNP [dm6]	G	T	3.083e^-4	0.804	INTRON tutl
3L	1406565	3L_1406565_SNP [dm3] 3L_1406565_SNP [dm6]	A	G	3.085e^-4	0.804	INTRON Ptp61F
2L	2360614	2L_2360614_SNP [dm3] 2L_2360614_SNP [dm6]	A	G	3.090e^-4	0.804	INTRON Rab5
X	5462709	X_5462709_DEL [dm3] X_5568676_DEL [dm6]	TT	T	3.094e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	7207266	2L_7207266_SNP [dm3] 2L_7207266_SNP [dm6]	T	A	3.095e^-4	0.804	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784
3L	8745109	3L_8745109_SNP [dm3] 3L_8752009_SNP [dm6]	A	G	3.099e^-4	0.804	UPSTREAM CR44527 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	4606495	3R_4606495_SNP [dm3] 3R_8780773_SNP [dm6]	T	C	3.100e^-4	0.804	UTR_5_PRIME CG33189 UPSTREAM CG33191 & 1 other DOWNSTREAM Pif1A INTRON Pif1B & 1 other	TF binding site mE1_TFBS_cad
3R	10272628	3R_10272628_SNP [dm3] 3R_14446906_SNP [dm6]	C	T	3.100e^-4	0.804	INTRON cv-c
3L	10264877	3L_10264877_SNP [dm3] 3L_10271777_SNP [dm6]	G	A	3.112e^-4	0.804	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	27129738	3R_27129738_SNP [dm3] 3R_31304016_SNP [dm6]	G	A	3.115e^-4	0.804	SYNONYMOUS_CODING CG11340
3L	3103926	3L_3103926_SNP [dm3] 3L_3103926_SNP [dm6]	C	T	3.120e^-4	0.804	INTRON Cht7
3R	5709131	3R_5709131_SNP [dm3] 3R_9883409_SNP [dm6]	C	G	3.133e^-4	0.804	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16965216	2R_16965216_SNP [dm3] 2R_21077711_SNP [dm6]	A	C	3.135e^-4	0.804	INTRON Treh
3L	712399	3L_712399_SNP [dm3] 3L_712399_SNP [dm6]	A	T	3.135e^-4	0.804	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	16897808	3L_16897808_SNP [dm3] 3L_16904708_SNP [dm6]	G	C	3.138e^-4	0.804	SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
2L	17861790	2L_17861790_DEL [dm3] 2L_17861790_DEL [dm6]	AA	A	3.141e^-4	0.804	INTRON CadN2
3R	14660016	3R_14660016_SNP [dm3] 3R_18834294_SNP [dm6]	G	A	3.144e^-4	0.804	INTRON CG18208
X	2926643	X_2926643_SNP [dm3] X_3032610_SNP [dm6]	C	T	3.153e^-4	0.804	INTRON kirre
3L	1585964	3L_1585964_DEL [dm3] 3L_1585964_DEL [dm6]	AATT	A	3.155e^-4	0.804	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_kn mE1_TFBS_Trl
3L	17965177	3L_17965177_SNP [dm3] 3L_17972077_SNP [dm6]	T	G	3.157e^-4	0.804	UPSTREAM Eip75B INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_Trl
3R	19264837	3R_19264837_DEL [dm3] 3R_23439115_DEL [dm6]	TT	T	3.164e^-4	0.804	INTRON CG4374
3L	5650459	3L_5650459_SNP [dm3] 3L_5657359_SNP [dm6]	C	G	3.166e^-4	0.804	UTR_3_PRIME lin-28 UPSTREAM sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	15257416	2R_15257416_SNP [dm3] 2R_19369911_SNP [dm6]	A	T	3.167e^-4	0.804	INTRON CG9416
2R	12116819	2R_12116819_SNP [dm3] 2R_16229314_SNP [dm6]	A	G	3.173e^-4	0.804	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	13739147	X_13739147_SNP [dm3] X_13845114_SNP [dm6]	A	G	3.178e^-4	0.804	INTRON AMPdeam	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu
2R	10929901	2R_10929901_SNP [dm3] 2R_15042396_SNP [dm6]	C	T	3.179e^-4	0.804	DOWNSTREAM hbs INTERGENIC
3L	8458809	3L_8458809_SNP [dm3] 3L_8465709_SNP [dm6]	C	A	3.182e^-4	0.804	SYNONYMOUS_CODING Gug	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19737343	2L_19737343_SNP [dm3] 2L_19737343_SNP [dm6]	G	T	3.184e^-4	0.804	DOWNSTREAM Nf-YB INTERGENIC
2L	9147166	2L_9147166_SNP [dm3] 2L_9147166_SNP [dm6]	C	A	3.186e^-4	0.804	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad
2R	4953916	2R_4953916_SNP [dm3] 2R_9066411_SNP [dm6]	G	T	3.190e^-4	0.804	INTRON ana	regulatory region REDfly_CRMs
3R	14394850	3R_14394850_SNP [dm3] 3R_18569128_SNP [dm6]	C	A	3.200e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16709971	3R_16709971_SNP [dm3] 3R_20884249_SNP [dm6]	A	T	3.201e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_cad
X	22364820	X_22364820_SNP [dm3] X_22962984_SNP [dm6]	C	G	3.203e^-4	0.804	UPSTREAM CG40485 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19188718	3R_19188718_SNP [dm3] 3R_23362996_SNP [dm6]	C	T	3.215e^-4	0.804	SYNONYMOUS_CODING CG4408	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2926636	X_2926636_SNP [dm3] X_3032603_SNP [dm6]	T	A	3.225e^-4	0.804	INTRON kirre
X	12355327	X_12355327_SNP [dm3] X_12461294_SNP [dm6]	A	G	3.226e^-4	0.804	INTRON Rab40
3L	9735039	3L_9735039_SNP [dm3] 3L_9741939_SNP [dm6]	A	T	3.228e^-4	0.804	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	16685557	X_16685557_SNP [dm3] X_16791524_SNP [dm6]	T	A	3.230e^-4	0.804	UPSTREAM CG4768 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12267152	2R_12267152_SNP [dm3] 2R_16379647_SNP [dm6]	T	A	3.234e^-4	0.804	UPSTREAM CG43187 EXON CR45316 & 1 other
2R	14271066	2R_14271066_SNP [dm3] 2R_18383561_SNP [dm6]	T	A	3.239e^-4	0.804	UPSTREAM IM1 & 1 other INTERGENIC
3L	12834570	3L_12834570_SNP [dm3] 3L_12841470_SNP [dm6]	G	A	3.242e^-4	0.804	INTRON CG10960
3R	21141048	3R_21141048_SNP [dm3] 3R_25315326_SNP [dm6]	G	T	3.253e^-4	0.804	INTRON CG10559
3L	712388	3L_712388_DEL [dm3] 3L_712388_DEL [dm6]	AAT	A	3.260e^-4	0.804	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	8137681	2R_8137681_SNP [dm3] 2R_12250176_SNP [dm6]	A	C	3.264e^-4	0.804	INTERGENIC
2R	3078696	2R_3078696_SNP [dm3] 2R_7191191_SNP [dm6]	C	T	3.271e^-4	0.804	INTRON pk	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
2L	9463950	2L_9463950_SNP [dm3] 2L_9463950_SNP [dm6]	T	C	3.272e^-4	0.804	UTR_3_PRIME numb DOWNSTREAM numb
3L	6904128	3L_6904128_SNP [dm3] 3L_6911028_SNP [dm6]	A	G	3.278e^-4	0.804	DOWNSTREAM Prat2 INTERGENIC
2L	9438520	2L_9438520_SNP [dm3] 2L_9438520_SNP [dm6]	C	T	3.278e^-4	0.804	INTRON numb	TF binding site BDTNP1_TFBS_dl
2R	11338512	2R_11338512_SNP [dm3] 2R_15451007_SNP [dm6]	G	T	3.278e^-4	0.804	INTRON CG43729	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11409484	2R_11409484_SNP [dm3] 2R_15521979_SNP [dm6]	T	C	3.285e^-4	0.804	INTRON Khc-73
2R	3255635	2R_3255635_SNP [dm3] 2R_7368130_SNP [dm6]	A	G	3.289e^-4	0.804	INTRON Dscam1
X	11320928	X_11320928_MNP [dm3] X_11426895_MNP [dm6]	GCGG	TTTT	3.290e^-4	0.804	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11320932	X_11320932_INS [dm3] X_11426899_INS [dm6]	A	AAT	3.290e^-4	0.804	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5826894	X_5826894_INS [dm3] X_5932861_INS [dm6]	T	TT	3.290e^-4	0.804	INTRON CG3726
2R	11175856	2R_11175856_SNP [dm3] 2R_15288351_SNP [dm6]	C	T	3.305e^-4	0.804	INTRON Trpm
X	14842374	X_14842374_INS [dm3] X_14948341_INS [dm6]	A	ACATAGTCCATAAGGTA...	3.306e^-4	0.804	INTRON pdgy	TF binding site mE1_TFBS_HSA
3L	19448906	3L_19448906_SNP [dm3] 3L_19455806_SNP [dm6]	A	G	3.312e^-4	0.804	DOWNSTREAM CR45434 INTERGENIC
2R	15891156	2R_15891156_SNP [dm3] 2R_20003651_SNP [dm6]	T	C	3.312e^-4	0.804	UTR_3_PRIME CG16898
2R	11683256	2R_11683256_SNP [dm3] 2R_15795751_SNP [dm6]	C	T	3.312e^-4	0.804	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	18712002	3L_18712002_SNP [dm3] 3L_18718902_SNP [dm6]	A	T	3.321e^-4	0.805	INTERGENIC
X	14121085	X_14121085_SNP [dm3] X_14227052_SNP [dm6]	C	A	3.334e^-4	0.805	SYNONYMOUS_CODING mRpL38	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11855480	2R_11855480_SNP [dm3] 2R_15967975_SNP [dm6]	G	T	3.337e^-4	0.805	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
3L	14931260	3L_14931260_SNP [dm3] 3L_14938160_SNP [dm6]	G	C	3.337e^-4	0.805	INTRON DCX-EMAP
3L	3680552	3L_3680552_SNP [dm3] 3L_3680552_SNP [dm6]	C	T	3.342e^-4	0.805	INTERGENIC	TF binding site mE1_TFBS_cad
2R	18475352	2R_18475352_SNP [dm3] 2R_22587847_SNP [dm6]	G	C	3.350e^-4	0.805	INTRON dnr1
3L	19496781	3L_19496781_SNP [dm3] 3L_19503681_SNP [dm6]	G	A	3.354e^-4	0.805	START_GAINED CG9452 UTR_5_PRIME CG9452
3L	16216199	3L_16216199_SNP [dm3] 3L_16223099_SNP [dm6]	C	T	3.358e^-4	0.805	DOWNSTREAM tRNA:CR32153 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3L	4719151	3L_4719151_SNP [dm3] 3L_4719151_SNP [dm6]	C	A	3.359e^-4	0.805	INTRON RhoGEF64C
3L	10450795	3L_10450795_SNP [dm3] 3L_10457695_SNP [dm6]	G	A	3.365e^-4	0.805	INTERGENIC
3L	10450797	3L_10450797_SNP [dm3] 3L_10457697_SNP [dm6]	G	A	3.365e^-4	0.805	INTERGENIC
2R	16864990	2R_16864990_SNP [dm3] 2R_20977485_SNP [dm6]	G	T	3.368e^-4	0.805	UTR_3_PRIME CG9344 DOWNSTREAM CG15650 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	21055222	2L_21055222_SNP [dm3] 2L_21055222_SNP [dm6]	A	T	3.376e^-4	0.806	NON_SYNONYMOUS_CODING Itgbetanu	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7921405	3L_7921405_SNP [dm3] 3L_7928305_SNP [dm6]	C	T	3.394e^-4	0.808	SYNONYMOUS_CODING syd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	12972846	3R_12972846_SNP [dm3] 3R_17147124_SNP [dm6]	C	T	3.398e^-4	0.808	NON_SYNONYMOUS_CODING m-cup
3L	14556612	3L_14556612_SNP [dm3] 3L_14563512_SNP [dm6]	A	G	3.401e^-4	0.808	DOWNSTREAM CG34039 INTERGENIC	TF binding site mE1_TFBS_Kr
X	17503877	X_17503877_SNP [dm3] X_17609844_SNP [dm6]	G	T	3.405e^-4	0.808	INTERGENIC
2R	12389779	2R_12389779_SNP [dm3] 2R_16502274_SNP [dm6]	A	G	3.407e^-4	0.808	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	17302534	2L_17302534_SNP [dm3] 2L_17302534_SNP [dm6]	A	G	3.408e^-4	0.808	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	18279658	X_18279658_SNP [dm3] X_18385625_SNP [dm6]	T	A	3.425e^-4	0.81	UPSTREAM betaCOP INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	4944897	2R_4944897_SNP [dm3] 2R_9057392_SNP [dm6]	C	A	3.430e^-4	0.81	INTRON CG13743
2R	11696540	2R_11696540_SNP [dm3] 2R_15809035_SNP [dm6]	T	G	3.436e^-4	0.81	INTRON tun & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16876913	X_16876913_SNP [dm3] X_16982880_SNP [dm6]	T	G	3.448e^-4	0.81	INTRON CG45002
X	6115714	X_6115714_SNP [dm3] X_6221681_SNP [dm6]	C	T	3.449e^-4	0.81	SYNONYMOUS_CODING Efr	TF binding site mE1_TFBS_sens
3R	6253280	3R_6253280_SNP [dm3] 3R_10427558_SNP [dm6]	T	A	3.453e^-4	0.81	INTERGENIC
2L	8702856	2L_8702856_SNP [dm3] 2L_8702856_SNP [dm6]	A	T	3.453e^-4	0.81	UPSTREAM CR44992 INTRON Hnf4
3R	8590885	3R_8590885_SNP [dm3] 3R_12765163_SNP [dm6]	T	A	3.461e^-4	0.81	INTRON beat-Vc
3L	4768992	3L_4768992_SNP [dm3] 3L_4768992_SNP [dm6]	C	A	3.469e^-4	0.81	INTRON RhoGEF64C
2R	10998553	2R_10998553_SNP [dm3] 2R_15111048_SNP [dm6]	C	T	3.470e^-4	0.81	INTERGENIC
2R	9147438	2R_9147438_SNP [dm3] 2R_13259933_SNP [dm6]	G	A	3.473e^-4	0.81	UPSTREAM CG42319 INTERGENIC
3L	5892862	3L_5892862_SNP [dm3] 3L_5899762_SNP [dm6]	C	T	3.482e^-4	0.81	DOWNSTREAM CG5592 INTRON CG32409	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	14271099	2R_14271099_SNP [dm3] 2R_18383594_SNP [dm6]	G	A	3.490e^-4	0.81	UPSTREAM IM1 & 2 others INTERGENIC
X	13265005	X_13265005_SNP [dm3] X_13370972_SNP [dm6]	G	A	3.490e^-4	0.81	UPSTREAM CG1640 DOWNSTREAM dmrt11E INTRON CG1640	TF binding site BDTNP1_TFBS_dl
2R	12476419	2R_12476419_SNP [dm3] 2R_16588914_SNP [dm6]	G	A	3.498e^-4	0.81	SYNONYMOUS_CODING CG8311 DOWNSTREAM CG8306	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12418606	2L_12418606_SNP [dm3] 2L_12418606_SNP [dm6]	C	T	3.503e^-4	0.81	INTRON vir-1
2L	2863631	2L_2863631_SNP [dm3] 2L_2863631_SNP [dm6]	G	T	3.504e^-4	0.81	INTRON CG2991	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13558475	2R_13558475_SNP [dm3] 2R_17670970_SNP [dm6]	T	C	3.512e^-4	0.81	UPSTREAM CR44404 DOWNSTREAM CG30108 & 2 others INTERGENIC
2R	8933808	2R_8933808_SNP [dm3] 2R_13046303_SNP [dm6]	C	G	3.522e^-4	0.81	UTR_3_PRIME CG13323 DOWNSTREAM CG13323
3R	26618148	3R_26618148_SNP [dm3] 3R_30792426_SNP [dm6]	T	G	3.528e^-4	0.81	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
3L	7723401	3L_7723401_SNP [dm3] 3L_7730301_SNP [dm6]	C	T	3.534e^-4	0.81	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15296567	2R_15296567_SNP [dm3] 2R_19409062_SNP [dm6]	C	T	3.535e^-4	0.81	UTR_3_PRIME hts DOWNSTREAM hts INTRON hts
2L	7343130	2L_7343130_SNP [dm3] 2L_7343130_SNP [dm6]	G	T	3.537e^-4	0.81	INTRON Wnt6
2R	14978887	2R_14978887_SNP [dm3] 2R_19091382_SNP [dm6]	G	A	3.537e^-4	0.81	SYNONYMOUS_CODING 5-HT1A
2R	15841021	2R_15841021_SNP [dm3] 2R_19953516_SNP [dm6]	C	T	3.545e^-4	0.81	UPSTREAM CG44622 INTERGENIC
X	18264761	X_18264761_SNP [dm3] X_18370728_SNP [dm6]	A	T	3.548e^-4	0.81	UPSTREAM CrebB & 1 other INTRON CrebB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	18870984	3L_18870984_INS [dm3] 3L_18877884_INS [dm6]	T	TT	3.554e^-4	0.81	UTR_3_PRIME Ugt DOWNSTREAM CG3961
X	14154449	X_14154449_SNP [dm3] X_14260416_SNP [dm6]	G	T	3.560e^-4	0.81	UPSTREAM CG1461 INTERGENIC
2R	4956302	2R_4956302_SNP [dm3] 2R_9068797_SNP [dm6]	C	T	3.562e^-4	0.81	UPSTREAM ana INTRON ana
3R	6105410	3R_6105410_SNP [dm3] 3R_10279688_SNP [dm6]	C	G	3.565e^-4	0.81	INTRON CG43143
3L	7943127	3L_7943127_SNP [dm3] 3L_7950027_SNP [dm6]	C	T	3.570e^-4	0.81	INTRON exex
2R	6964734	2R_6964734_SNP [dm3] 2R_11077229_SNP [dm6]	G	A	3.571e^-4	0.81	INTRON luna	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12111006	2R_12111006_SNP [dm3] 2R_16223501_SNP [dm6]	G	A	3.582e^-4	0.81	SYNONYMOUS_CODING CG15706 UPSTREAM CG7798 DOWNSTREAM CR43898
X	16855642	X_16855642_SNP [dm3] X_16961609_SNP [dm6]	C	A	3.585e^-4	0.81	SYNONYMOUS_CODING CG9086	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12355375	X_12355375_SNP [dm3] X_12461342_SNP [dm6]	T	C	3.591e^-4	0.81	INTRON Rab40
X	22330264	X_22330264_SNP [dm3] X_22928428_SNP [dm6]	G	T	3.591e^-4	0.81	INTERGENIC
2L	1867621	2L_1867621_SNP [dm3] 2L_1867621_SNP [dm6]	G	T	3.594e^-4	0.81	INTRON CG31663
3R	18623590	3R_18623590_SNP [dm3] 3R_22797868_SNP [dm6]	T	C	3.596e^-4	0.81	INTERGENIC
3R	18623603	3R_18623603_SNP [dm3] 3R_22797881_SNP [dm6]	A	G	3.596e^-4	0.81	INTERGENIC
2L	17302565	2L_17302565_SNP [dm3] 2L_17302565_SNP [dm6]	C	A	3.596e^-4	0.81	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	7617605	X_7617605_SNP [dm3] X_7723572_SNP [dm6]	A	T	3.600e^-4	0.81	NON_SYNONYMOUS_CODING Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	12439132	3L_12439132_DEL [dm3] 3L_12446032_DEL [dm6]	TT	T	3.601e^-4	0.81	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11178135	2R_11178135_SNP [dm3] 2R_15290630_SNP [dm6]	T	C	3.610e^-4	0.811	INTRON Trpm
2L	10672200	2L_10672200_SNP [dm3] 2L_10672200_SNP [dm6]	T	A	3.619e^-4	0.811	DOWNSTREAM CG31871 INTERGENIC
X	10517804	X_10517804_SNP [dm3] X_10623771_SNP [dm6]	A	G	3.622e^-4	0.811	UTR_3_PRIME CG9806 UPSTREAM Rab9Db
2R	16864986	2R_16864986_SNP [dm3] 2R_20977481_SNP [dm6]	A	G	3.626e^-4	0.811	UTR_3_PRIME CG9344 DOWNSTREAM CG15650 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	9445153	2L_9445153_SNP [dm3] 2L_9445153_SNP [dm6]	T	C	3.626e^-4	0.811	INTRON numb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	20945746	3L_20945746_SNP [dm3] 3L_20952646_SNP [dm6]	G	A	3.634e^-4	0.811	INTERGENIC
3R	15384897	3R_15384897_DEL [dm3] 3R_19559175_DEL [dm6]	TT	T	3.635e^-4	0.811	INTRON Dys
2R	7157912	2R_7157912_SNP [dm3] 2R_11270407_SNP [dm6]	G	C	3.661e^-4	0.812	INTRON Cpr47Ef
X	15077567	X_15077567_SNP [dm3] X_15183534_SNP [dm6]	A	G	3.662e^-4	0.812	INTRON CG43737
3R	3469607	3R_3469607_SNP [dm3] 3R_7643885_SNP [dm6]	C	T	3.678e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10272634	3R_10272634_SNP [dm3] 3R_14446912_SNP [dm6]	T	C	3.683e^-4	0.812	INTRON cv-c
2L	18930447	2L_18930447_SNP [dm3] 2L_18930447_SNP [dm6]	G	A	3.687e^-4	0.812	INTRON ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22141235	3R_22141235_SNP [dm3] 3R_26315513_SNP [dm6]	G	A	3.695e^-4	0.812	INTERGENIC
2L	19798641	2L_19798641_SNP [dm3] 2L_19798641_SNP [dm6]	G	A	3.708e^-4	0.812	INTRON sick
2R	16864219	2R_16864219_SNP [dm3] 2R_20976714_SNP [dm6]	G	A	3.711e^-4	0.812	UPSTREAM CG9344 DOWNSTREAM CG15650 INTRON CG34115	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	4860114	2L_4860114_SNP [dm3] 2L_4860114_SNP [dm6]	G	C	3.718e^-4	0.812	INTRON pog
3L	5650243	3L_5650243_SNP [dm3] 3L_5657143_SNP [dm6]	T	C	3.730e^-4	0.812	UTR_3_PRIME lin-28 UPSTREAM sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13360593	3R_13360593_SNP [dm3] 3R_17534871_SNP [dm6]	C	T	3.733e^-4	0.812	UTR_5_PRIME P5cr-2 UPSTREAM P5cr-2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	7721688	3L_7721688_SNP [dm3] 3L_7728588_SNP [dm6]	A	G	3.734e^-4	0.812	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
X	6898468	X_6898468_SNP [dm3] X_7004435_SNP [dm6]	C	T	3.743e^-4	0.812	DOWNSTREAM Inx2 INTRON Inx7
2L	14031895	2L_14031895_SNP [dm3] 2L_14031895_SNP [dm6]	T	C	3.743e^-4	0.812	UPSTREAM CG18095 DOWNSTREAM CR45284 INTERGENIC
3R	14030411	3R_14030411_SNP [dm3] 3R_18204689_SNP [dm6]	G	A	3.749e^-4	0.812	INTRON CG7985
2R	12821148	2R_12821148_SNP [dm3] 2R_16933643_SNP [dm6]	C	T	3.750e^-4	0.812	INTRON Pkc53E	TF binding site BDTNP1_TFBS_twi
X	12665890	X_12665890_SNP [dm3] X_12771857_SNP [dm6]	C	G	3.756e^-4	0.812	UTR_3_PRIME CG3812 & 1 other DOWNSTREAM CG3812
X	11321022	X_11321022_SNP [dm3] X_11426989_SNP [dm6]	A	T	3.758e^-4	0.812	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16864024	2R_16864024_SNP [dm3] 2R_20976519_SNP [dm6]	A	C	3.769e^-4	0.812	UPSTREAM CG9344 INTRON CG34115	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	19317553	2R_19317553_SNP [dm3] 2R_23430030_SNP [dm6]	C	T	3.771e^-4	0.812	INTRON CG9815
3L	14817116	3L_14817116_SNP [dm3] 3L_14824016_SNP [dm6]	A	T	3.785e^-4	0.812	INTRON CG17839
X	11321111	X_11321111_SNP [dm3] X_11427078_SNP [dm6]	C	G	3.786e^-4	0.812	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7113595	2L_7113595_SNP [dm3] 2L_7113595_SNP [dm6]	A	G	3.794e^-4	0.812	INTRON Pvf3
3L	15320685	3L_15320685_SNP [dm3] 3L_15327585_SNP [dm6]	A	T	3.795e^-4	0.812	INTERGENIC
2R	16436597	2R_16436597_SNP [dm3] 2R_20549092_SNP [dm6]	C	T	3.798e^-4	0.812	NON_SYNONYMOUS_CODING Obp57d UTR_3_PRIME Cpr57A UPSTREAM Obp57e DOWNSTREAM Cpr57A	regulatory region REDfly_CRMs
X	21172679	X_21172679_DEL [dm3] X_21301652_DEL [dm6]	AA	A	3.805e^-4	0.812	INTRON CG1718
2L	9846468	2L_9846468_SNP [dm3] 2L_9846468_SNP [dm6]	T	C	3.811e^-4	0.812	INTRON nAChRalpha6
3R	17345560	3R_17345560_DEL [dm3] 3R_21519838_DEL [dm6]	TAGA	T	3.814e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	21141050	3R_21141050_SNP [dm3] 3R_25315328_SNP [dm6]	A	C	3.818e^-4	0.812	INTRON CG10559
3L	18216668	3L_18216668_SNP [dm3] 3L_18223568_SNP [dm6]	G	A	3.818e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_inv
2L	10082295	2L_10082295_SNP [dm3] 2L_10082295_SNP [dm6]	C	T	3.818e^-4	0.812	INTRON CG44153	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14788353	2L_14788353_SNP [dm3] 2L_14788353_SNP [dm6]	C	A	3.820e^-4	0.812	INTERGENIC
2R	16517576	2R_16517576_SNP [dm3] 2R_20630071_SNP [dm6]	T	C	3.823e^-4	0.812	SYNONYMOUS_CODING Rcd6	TF binding site mE1_TFBS_chinmo
X	6829521	X_6829521_SNP [dm3] X_6935488_SNP [dm6]	T	C	3.824e^-4	0.812	INTRON CG14431
2R	12514940	2R_12514940_SNP [dm3] 2R_16627435_SNP [dm6]	G	T	3.827e^-4	0.812	UTR_3_PRIME Alk
X	19871594	X_19871594_INS [dm3] X_19977561_INS [dm6]	A	AC	3.833e^-4	0.812	INTERGENIC
X	7618967	X_7618967_SNP [dm3] X_7724934_SNP [dm6]	T	C	3.846e^-4	0.812	SYNONYMOUS_CODING Hira
3L	1103300	3L_1103300_SNP [dm3] 3L_1103300_SNP [dm6]	T	G	3.846e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	9504688	2L_9504688_SNP [dm3] 2L_9504688_SNP [dm6]	G	A	3.854e^-4	0.812	SYNONYMOUS_CODING CG33298
X	8633305	X_8633305_SNP [dm3] X_8739272_SNP [dm6]	A	T	3.855e^-4	0.812	INTERGENIC
3R	25238581	3R_25238581_SNP [dm3] 3R_29412859_SNP [dm6]	C	A	3.861e^-4	0.812	INTRON Ptp99A	TF binding site BDTNP1_TFBS_twi
2L	14270848	2L_14270848_SNP [dm3] 2L_14270848_SNP [dm6]	G	C	3.870e^-4	0.812	INTRON wb
2R	13237688	2R_13237688_SNP [dm3] 2R_17350183_SNP [dm6]	T	C	3.872e^-4	0.812	INTRON mbl
X	14154365	X_14154365_DEL [dm3] X_14260332_DEL [dm6]	AA	C	3.872e^-4	0.812	UPSTREAM CG1461 INTERGENIC
2L	21911710	2L_21911710_INS [dm3] 2L_21911710_INS [dm6]	A	AAATA	3.876e^-4	0.812	INTERGENIC
3L	3966395	3L_3966395_SNP [dm3] 3L_3966395_SNP [dm6]	C	T	3.877e^-4	0.812	INTERGENIC
X	8292916	X_8292916_SNP [dm3] X_8398883_SNP [dm6]	C	G	3.878e^-4	0.812	UPSTREAM CG10555 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1042781	3L_1042781_SNP [dm3] 3L_1042781_SNP [dm6]	T	C	3.879e^-4	0.812	INTRON bab1
2L	9426788	2L_9426788_SNP [dm3] 2L_9426788_SNP [dm6]	C	T	3.880e^-4	0.812	UTR_5_PRIME Fbp2 UPSTREAM Fbp2 DOWNSTREAM Mco1
3L	9177943	3L_9177943_SNP [dm3] 3L_9184843_SNP [dm6]	A	C	3.886e^-4	0.812	INTERGENIC
X	13137038	X_13137038_SNP [dm3] X_13243005_SNP [dm6]	A	G	3.890e^-4	0.812	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	13310271	3L_13310271_SNP [dm3] 3L_13317171_SNP [dm6]	C	T	3.894e^-4	0.812	INTERGENIC
X	13136787	X_13136787_SNP [dm3] X_13242754_SNP [dm6]	C	T	3.906e^-4	0.812	INTRON mew	TF binding site BDTNP1_TFBS_da
3R	20565182	3R_20565182_SNP [dm3] 3R_24739460_SNP [dm6]	T	G	3.906e^-4	0.812	INTRON tok
3R	19116894	3R_19116894_INS [dm3] 3R_23291172_INS [dm6]	T	GG	3.908e^-4	0.812	UTR_3_PRIME pnt UPSTREAM CG4434
3L	14813879	3L_14813879_SNP [dm3] 3L_14820779_SNP [dm6]	A	T	3.909e^-4	0.812	INTRON CG17839
3L	20924804	3L_20924804_SNP [dm3] 3L_20931704_SNP [dm6]	T	C	3.915e^-4	0.812	INTRON fng	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6508912	2L_6508912_SNP [dm3] 2L_6508912_SNP [dm6]	T	A	3.924e^-4	0.812	UPSTREAM CR44775 INTRON CG31637	TF binding site BDTNP1_TFBS_hb
3L	17672226	3L_17672226_SNP [dm3] 3L_17679126_SNP [dm6]	C	A	3.928e^-4	0.812	INTRON CG34251
2R	11409467	2R_11409467_SNP [dm3] 2R_15521962_SNP [dm6]	A	C	3.930e^-4	0.812	INTRON Khc-73
X	14805567	X_14805567_SNP [dm3] X_14911534_SNP [dm6]	T	C	3.935e^-4	0.812	UPSTREAM CG14406 DOWNSTREAM CG12398 INTRON Flo2
X	13137037	X_13137037_SNP [dm3] X_13243004_SNP [dm6]	C	T	3.939e^-4	0.812	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	2914838	2L_2914838_SNP [dm3] 2L_2914838_SNP [dm6]	G	C	3.942e^-4	0.812	INTRON lilli
3L	7611953	3L_7611953_INS [dm3] 3L_7618853_INS [dm6]	A	AA	3.944e^-4	0.812	INTRON CG33275
2L	5557581	2L_5557581_SNP [dm3] 2L_5557581_SNP [dm6]	A	G	3.945e^-4	0.812	SPLICE_SITE_REGION GluRIIA SYNONYMOUS_CODING GluRIIA
2R	16143864	2R_16143864_SNP [dm3] 2R_20256359_SNP [dm6]	A	G	3.945e^-4	0.812	INTRON Ate1	TF binding site mE1_TFBS_cad
3L	12160823	3L_12160823_SNP [dm3] 3L_12167723_SNP [dm6]	G	T	3.948e^-4	0.812	INTRON Rh7
3L	14487853	3L_14487853_SNP [dm3] 3L_14494753_SNP [dm6]	G	C	3.954e^-4	0.812	INTRON bbg
2L	18488592	2L_18488592_SNP [dm3] 2L_18488592_SNP [dm6]	C	G	3.963e^-4	0.812	NON_SYNONYMOUS_CODING kon DOWNSTREAM CG10176	TF binding site mE1_TFBS_sens
2R	3972438	2R_3972438_DEL [dm3] 2R_8084933_DEL [dm6]	TGTATAAA	T	3.964e^-4	0.812	INTRON sut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4097744	3R_4097744_SNP [dm3] 3R_8272022_SNP [dm6]	G	A	3.965e^-4	0.812	INTERGENIC	regulatory region REDfly_CRMs
2L	18908808	2L_18908808_SNP [dm3] 2L_18908808_SNP [dm6]	G	T	3.971e^-4	0.812	INTERGENIC
3L	11276303	3L_11276303_SNP [dm3] 3L_11283203_SNP [dm6]	A	T	3.971e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	5395530	2R_5395530_SNP [dm3] 2R_9508025_SNP [dm6]	A	C	3.978e^-4	0.812	UTR_5_PRIME brp INTRON brp	TF binding site mE1_TFBS_Trl
2R	8452798	2R_8452798_SNP [dm3] 2R_12565293_SNP [dm6]	C	A	3.980e^-4	0.812	UPSTREAM CG33775 & 1 other INTERGENIC
3L	4556798	3L_4556798_SNP [dm3] 3L_4556798_SNP [dm6]	C	A	3.980e^-4	0.812	UPSTREAM CG42540 INTRON CG42540
3L	16202369	3L_16202369_SNP [dm3] 3L_16209269_SNP [dm6]	G	A	3.985e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_cad
X	7859843	X_7859843_SNP [dm3] X_7965810_SNP [dm6]	G	A	3.985e^-4	0.812	INTRON sn & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	14442539	X_14442539_SNP [dm3] X_14548506_SNP [dm6]	C	T	3.989e^-4	0.812	INTERGENIC
3L	3016469	3L_3016469_SNP [dm3] 3L_3016469_SNP [dm6]	G	C	3.990e^-4	0.812	NON_SYNONYMOUS_CODING CG32487 UPSTREAM CG32488
2L	17302476	2L_17302476_SNP [dm3] 2L_17302476_SNP [dm6]	A	C	3.991e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_sbb
2L	15090500	2L_15090500_SNP [dm3] 2L_15090500_SNP [dm6]	T	A	4.007e^-4	0.813	INTRON CG15270
2R	7157406	2R_7157406_SNP [dm3] 2R_11269901_SNP [dm6]	T	C	4.009e^-4	0.813	NON_SYNONYMOUS_CODING Cpr47Ef	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	10030796	X_10030796_SNP [dm3] X_10136763_SNP [dm6]	G	A	4.013e^-4	0.813	INTRON CR44894 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4094020	X_4094020_SNP [dm3] X_4199987_SNP [dm6]	T	C	4.022e^-4	0.813	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19024800	2R_19024800_SNP [dm3] 2R_23137277_SNP [dm6]	G	A	4.022e^-4	0.813	INTERGENIC
2R	15906348	2R_15906348_SNP [dm3] 2R_20018843_SNP [dm6]	G	A	4.030e^-4	0.813	INTERGENIC
2R	3077646	2R_3077646_SNP [dm3] 2R_7190141_SNP [dm6]	T	G	4.035e^-4	0.813	INTRON pk
X	21458777	X_21458777_SNP [dm3] X_21587750_SNP [dm6]	C	T	4.037e^-4	0.813	INTERGENIC
X	11944900	X_11944900_SNP [dm3] X_12050867_SNP [dm6]	G	A	4.041e^-4	0.813	INTRON CR43960 & 1 other
3L	2651294	3L_2651294_SNP [dm3] 3L_2651294_SNP [dm6]	T	C	4.057e^-4	0.813	UPSTREAM Snup & 1 other INTRON Aats-pro	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	16890216	3R_16890216_SNP [dm3] 3R_21064494_SNP [dm6]	C	T	4.057e^-4	0.813	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3R	14851132	3R_14851132_SNP [dm3] 3R_19025410_SNP [dm6]	T	G	4.058e^-4	0.813	SYNONYMOUS_CODING CG14285 DOWNSTREAM CG14286 & 1 other
3R	27647596	3R_27647596_DEL [dm3] 3R_31821874_DEL [dm6]	TTA	T	4.072e^-4	0.813	INTRON RhoGAP100F
X	5457735	X_5457735_SNP [dm3] X_5563702_SNP [dm6]	C	A	4.085e^-4	0.813	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
3R	6218645	3R_6218645_SNP [dm3] 3R_10392923_SNP [dm6]	A	G	4.089e^-4	0.813	INTRON cwo
X	14182626	X_14182626_SNP [dm3] X_14288593_SNP [dm6]	G	A	4.105e^-4	0.813	DOWNSTREAM Muc12Ea INTRON CG9400
2R	16837257	2R_16837257_SNP [dm3] 2R_20949752_SNP [dm6]	C	T	4.111e^-4	0.813	UPSTREAM CG33704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	3315081	3L_3315081_SNP [dm3] 3L_3315081_SNP [dm6]	T	C	4.118e^-4	0.813	SYNONYMOUS_CODING Drsl3 UPSTREAM Drsl4 DOWNSTREAM Drsl2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16889461	3R_16889461_SNP [dm3] 3R_21063739_SNP [dm6]	C	G	4.120e^-4	0.813	SYNONYMOUS_CODING Cortactin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_sens
3R	5138023	3R_5138023_SNP [dm3] 3R_9312301_SNP [dm6]	T	G	4.122e^-4	0.813	INTRON CG8861	TF binding site BDTNP1_TFBS_twi
X	7624737	X_7624737_SNP [dm3] X_7730704_SNP [dm6]	A	G	4.122e^-4	0.813	SYNONYMOUS_CODING CG12155	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16891248	3R_16891248_SNP [dm3] 3R_21065526_SNP [dm6]	C	T	4.125e^-4	0.813	UPSTREAM AnxB9 INTRON AnxB9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	16861770	2R_16861770_SNP [dm3] 2R_20974265_SNP [dm6]	T	A	4.125e^-4	0.813	UPSTREAM CG15649 INTERGENIC
3R	20919936	3R_20919936_SNP [dm3] 3R_25094214_SNP [dm6]	T	C	4.126e^-4	0.813	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	712423	3L_712423_SNP [dm3] 3L_712423_SNP [dm6]	G	C	4.130e^-4	0.813	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	3376671	X_3376671_SNP [dm3] X_3482638_SNP [dm6]	G	A	4.134e^-4	0.813	UPSTREAM CG10802 & 1 other INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	3660568	3L_3660568_SNP [dm3] 3L_3660568_SNP [dm6]	A	G	4.137e^-4	0.813	DOWNSTREAM CG43098 INTERGENIC
2R	7439752	2R_7439752_DEL [dm3] 2R_11552247_DEL [dm6]	GTATG	G	4.141e^-4	0.813	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22936798	3R_22936798_SNP [dm3] 3R_27111076_SNP [dm6]	C	T	4.143e^-4	0.813	DOWNSTREAM CR45209 INTRON gb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4176364	2R_4176364_SNP [dm3] 2R_8288859_SNP [dm6]	T	C	4.150e^-4	0.813	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	12023591	3R_12023591_SNP [dm3] 3R_16197869_SNP [dm6]	A	T	4.152e^-4	0.813	DOWNSTREAM CG6126 & 1 other INTERGENIC
3R	26629343	3R_26629343_SNP [dm3] 3R_30803621_SNP [dm6]	A	C	4.159e^-4	0.813	INTRON wts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	15941043	2R_15941043_SNP [dm3] 2R_20053538_SNP [dm6]	T	G	4.160e^-4	0.813	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
X	19871357	X_19871357_SNP [dm3] X_19977324_SNP [dm6]	C	A	4.164e^-4	0.813	INTERGENIC
2L	4147030	2L_4147030_SNP [dm3] 2L_4147030_SNP [dm6]	C	T	4.173e^-4	0.813	INTERGENIC
3L	14067639	3L_14067639_SNP [dm3] 3L_14074539_SNP [dm6]	G	A	4.178e^-4	0.813	INTRON Pex1
2R	18542213	2R_18542213_SNP [dm3] 2R_22654708_SNP [dm6]	A	C	4.179e^-4	0.813	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG30196 & 2 others INTERGENIC	TF binding site mE1_TFBS_cad
2R	12400738	2R_12400738_SNP [dm3] 2R_16513233_SNP [dm6]	C	G	4.182e^-4	0.813	INTRON Sema-2a
2R	11872612	2R_11872612_SNP [dm3] 2R_15985107_SNP [dm6]	T	C	4.183e^-4	0.813	SYNONYMOUS_CODING Strn-Mlck
3L	10025688	3L_10025688_SNP [dm3] 3L_10032588_SNP [dm6]	A	T	4.187e^-4	0.813	INTRON dpr6
2L	5925781	2L_5925781_SNP [dm3] 2L_5925781_SNP [dm6]	C	A	4.188e^-4	0.813	UPSTREAM dsf EXON CR43926	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6965286	2R_6965286_SNP [dm3] 2R_11077781_SNP [dm6]	T	A	4.189e^-4	0.813	INTRON luna
3R	19116850	3R_19116850_INS [dm3] 3R_23291128_INS [dm6]	G	GTT	4.189e^-4	0.813	UTR_3_PRIME pnt UPSTREAM CG4434
X	22364819	X_22364819_SNP [dm3] X_22962983_SNP [dm6]	A	T	4.196e^-4	0.813	UPSTREAM CG40485 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18542660	2R_18542660_SNP [dm3] 2R_22655155_SNP [dm6]	T	C	4.203e^-4	0.813	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other INTRON CG30196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	4097571	3R_4097571_SNP [dm3] 3R_8271849_SNP [dm6]	T	C	4.203e^-4	0.813	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3R	21677059	3R_21677059_SNP [dm3] 3R_25851337_SNP [dm6]	C	T	4.208e^-4	0.813	UPSTREAM CG5886 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	19283797	3R_19283797_SNP [dm3] 3R_23458075_SNP [dm6]	G	A	4.219e^-4	0.813	INTRON CG4374
2L	15306037	2L_15306037_SNP [dm3] 2L_15306037_SNP [dm6]	T	A	4.223e^-4	0.813	INTERGENIC
X	5372724	X_5372724_SNP [dm3] X_5478691_SNP [dm6]	G	A	4.225e^-4	0.813	UTR_5_PRIME SPR	TF binding site BDTNP1_TFBS_twi
3R	25026972	3R_25026972_SNP [dm3] 3R_29201250_SNP [dm6]	G	A	4.226e^-4	0.813	SYNONYMOUS_CODING CG11899 DOWNSTREAM Mesh1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12476425	2R_12476425_SNP [dm3] 2R_16588920_SNP [dm6]	G	A	4.226e^-4	0.813	SYNONYMOUS_CODING CG8311 DOWNSTREAM CG8306	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16248235	2R_16248235_SNP [dm3] 2R_20360730_SNP [dm6]	C	G	4.227e^-4	0.813	INTERGENIC
3L	14817336	3L_14817336_SNP [dm3] 3L_14824236_SNP [dm6]	G	A	4.231e^-4	0.813	INTRON CG17839
3L	7071913	3L_7071913_SNP [dm3] 3L_7078813_SNP [dm6]	A	C	4.238e^-4	0.814	INTERGENIC
3L	4056871	3L_4056871_SNP [dm3] 3L_4056871_SNP [dm6]	A	G	4.243e^-4	0.814	INTRON CG1136	TF binding site mE1_TFBS_cad
3L	7473829	3L_7473829_SNP [dm3] 3L_7480729_SNP [dm6]	C	G	4.274e^-4	0.819	INTERGENIC	TF binding site mE1_TFBS_inv
2L	14702724	2L_14702724_SNP [dm3] 2L_14702724_SNP [dm6]	C	G	4.281e^-4	0.819	INTERGENIC
2R	3972263	2R_3972263_SNP [dm3] 2R_8084758_SNP [dm6]	C	A	4.284e^-4	0.819	NON_SYNONYMOUS_CODING sut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9775436	2R_9775436_SNP [dm3] 2R_13887931_SNP [dm6]	G	A	4.289e^-4	0.819	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22618466	3R_22618466_INS [dm3] 3R_26792744_INS [dm6]	C	CG	4.289e^-4	0.819	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9199408	2L_9199408_SNP [dm3] 2L_9199408_SNP [dm6]	C	T	4.295e^-4	0.819	INTRON tai
3L	10759192	3L_10759192_SNP [dm3] 3L_10766092_SNP [dm6]	T	A	4.328e^-4	0.821	INTERGENIC
3R	4341488	3R_4341488_SNP [dm3] 3R_8515766_SNP [dm6]	G	A	4.328e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	11409504	2R_11409504_SNP [dm3] 2R_15521999_SNP [dm6]	T	C	4.330e^-4	0.821	SPLICE_SITE_REGION Khc-73 INTRON Khc-73
2R	18548549	2R_18548549_SNP [dm3] 2R_22661044_SNP [dm6]	T	A	4.332e^-4	0.821	UPSTREAM CG42566 DOWNSTREAM CG13511 INTRON CG42565 & 2 others	TF binding site mE1_TFBS_cad
3R	19061699	3R_19061699_SNP [dm3] 3R_23235977_SNP [dm6]	T	C	4.332e^-4	0.821	INTRON CG4467
3L	11266914	3L_11266914_SNP [dm3] 3L_11273814_SNP [dm6]	T	A	4.333e^-4	0.821	DOWNSTREAM CR44720 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	20262270	X_20262270_INS [dm3] X_20391243_INS [dm6]	A	ATCAATAATAATTCAA...	4.335e^-4	0.821	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19715501	2L_19715501_SNP [dm3] 2L_19715501_SNP [dm6]	C	T	4.348e^-4	0.821	INTRON Lar	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
X	12798505	X_12798505_SNP [dm3] X_12904472_SNP [dm6]	C	T	4.350e^-4	0.821	SYNONYMOUS_CODING CG4404 UPSTREAM CG4407	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13511055	2R_13511055_SNP [dm3] 2R_17623550_SNP [dm6]	A	G	4.355e^-4	0.821	INTRON CG10936
3L	411991	3L_411991_SNP [dm3] 3L_411991_SNP [dm6]	A	T	4.358e^-4	0.821	INTERGENIC
3R	9881278	3R_9881278_SNP [dm3] 3R_14055556_SNP [dm6]	C	A	4.362e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15649286	2L_15649286_SNP [dm3] 2L_15649286_SNP [dm6]	A	G	4.363e^-4	0.821	SYNONYMOUS_CODING CG4587
3L	2645586	3L_2645586_SNP [dm3] 3L_2645586_SNP [dm6]	T	G	4.369e^-4	0.821	INTRON CG1143	TF binding site mE1_TFBS_cad
2R	9940463	2R_9940463_SNP [dm3] 2R_14052958_SNP [dm6]	G	C	4.373e^-4	0.821	INTRON mam
3L	13887805	3L_13887805_SNP [dm3] 3L_13894705_SNP [dm6]	C	T	4.385e^-4	0.821	INTRON dysc
2L	19480177	2L_19480177_SNP [dm3] 2L_19480177_SNP [dm6]	A	G	4.391e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl

By genomic position
Variant impact
Gene name

Wing_Length phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results