DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.562e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.01635
In_3R_Mo	0.06304

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	7.0218	0.0299
In_3R_Mo	5.4979	0.064

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2401 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	712399	3L_712399_SNP [dm3] 3L_712399_SNP [dm6]	A	T	7.692e^-7	0.333	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712385	3L_712385_DEL [dm3] 3L_712385_DEL [dm6]	TA	T	9.445e^-7	0.333	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	4094020	X_4094020_SNP [dm3] X_4199987_SNP [dm6]	T	C	1.135e^-6	0.333	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	712376	3L_712376_SNP [dm3] 3L_712376_SNP [dm6]	G	A	1.206e^-6	0.333	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	4737896	3L_4737896_SNP [dm3] 3L_4737896_SNP [dm6]	G	A	1.288e^-6	0.333	INTRON RhoGEF64C
3L	712423	3L_712423_SNP [dm3] 3L_712423_SNP [dm6]	G	C	1.322e^-6	0.333	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	1.488e^-6	0.333	INTRON dnc
3L	712384	3L_712384_SNP [dm3] 3L_712384_SNP [dm6]	T	C	1.635e^-6	0.333	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712388	3L_712388_DEL [dm3] 3L_712388_DEL [dm6]	AAT	A	1.723e^-6	0.333	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	711790	3L_711790_SNP [dm3] 3L_711790_SNP [dm6]	A	T	2.105e^-6	0.333	UTR_5_PRIME CG13896	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	4737895	3L_4737895_SNP [dm3] 3L_4737895_SNP [dm6]	A	G	2.176e^-6	0.333	INTRON RhoGEF64C
3L	712348	3L_712348_SNP [dm3] 3L_712348_SNP [dm6]	G	T	2.308e^-6	0.333	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	13570329	3R_13570329_SNP [dm3] 3R_17744607_SNP [dm6]	A	C	2.610e^-6	0.333	INTRON TyrRII	TF binding site mE1_TFBS_cad
3R	3469607	3R_3469607_SNP [dm3] 3R_7643885_SNP [dm6]	C	T	3.074e^-6	0.333	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16202334	3L_16202334_SNP [dm3] 3L_16209234_SNP [dm6]	A	T	3.247e^-6	0.333	INTERGENIC	TF binding site mE1_TFBS_cad
3L	712337	3L_712337_SNP [dm3] 3L_712337_SNP [dm6]	G	T	3.250e^-6	0.333	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	3.274e^-6	0.333	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	712235	3L_712235_SNP [dm3] 3L_712235_SNP [dm6]	C	T	3.283e^-6	0.333	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	8207850	3L_8207850_SNP [dm3] 3L_8214750_SNP [dm6]	T	C	3.451e^-6	0.333	UPSTREAM CG8012 INTERGENIC
3L	16202321	3L_16202321_SNP [dm3] 3L_16209221_SNP [dm6]	G	T	3.864e^-6	0.333	INTERGENIC	TF binding site mE1_TFBS_cad
3L	711857	3L_711857_SNP [dm3] 3L_711857_SNP [dm6]	A	C	4.120e^-6	0.333	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	712377	3L_712377_SNP [dm3] 3L_712377_SNP [dm6]	A	C	4.314e^-6	0.333	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712319	3L_712319_INS [dm3] 3L_712319_INS [dm6]	C	CA	4.381e^-6	0.333	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712342	3L_712342_SNP [dm3] 3L_712342_SNP [dm6]	A	T	4.381e^-6	0.333	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712335	3L_712335_SNP [dm3] 3L_712335_SNP [dm6]	T	A	4.438e^-6	0.333	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	4093930	X_4093930_SNP [dm3] X_4199897_SNP [dm6]	T	C	4.974e^-6	0.359	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	712455	3L_712455_SNP [dm3] 3L_712455_SNP [dm6]	C	T	5.310e^-6	0.369	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	14813948	3L_14813948_SNP [dm3] 3L_14820848_SNP [dm6]	G	A	5.660e^-6	0.369	INTRON CG17839
3L	712374	3L_712374_SNP [dm3] 3L_712374_SNP [dm6]	G	C	6.005e^-6	0.369	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	21160839	X_21160839_SNP [dm3] X_21289812_SNP [dm6]	T	C	6.234e^-6	0.369	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13506075	2R_13506075_SNP [dm3] 2R_17618570_SNP [dm6]	T	G	6.341e^-6	0.369	UPSTREAM CG44403 INTRON CG10936
3L	712226	3L_712226_SNP [dm3] 3L_712226_SNP [dm6]	C	A	6.437e^-6	0.369	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	6.613e^-6	0.369	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21160844	X_21160844_SNP [dm3] X_21289817_SNP [dm6]	G	C	6.696e^-6	0.369	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10435085	3R_10435085_SNP [dm3] 3R_14609363_SNP [dm6]	G	T	7.130e^-6	0.373	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	4093939	X_4093939_SNP [dm3] X_4199906_SNP [dm6]	A	C	7.158e^-6	0.373	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	413912	3L_413912_SNP [dm3] 3L_413912_SNP [dm6]	C	T	7.374e^-6	0.374	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	16896011	3L_16896011_SNP [dm3] 3L_16902911_SNP [dm6]	A	T	7.923e^-6	0.379	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo
3L	14555445	3L_14555445_SNP [dm3] 3L_14562345_SNP [dm6]	A	T	8.220e^-6	0.379	INTRON CG34039	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
3L	16202369	3L_16202369_SNP [dm3] 3L_16209269_SNP [dm6]	G	A	8.342e^-6	0.379	INTERGENIC	TF binding site mE1_TFBS_cad
3L	712323	3L_712323_SNP [dm3] 3L_712323_SNP [dm6]	T	A	8.391e^-6	0.379	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	2868309	3R_2868309_SNP [dm3] 3R_7042587_SNP [dm6]	G	A	8.500e^-6	0.379	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	2868311	3R_2868311_INS [dm3] 3R_7042589_INS [dm6]	C	CGGA	8.910e^-6	0.388	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	15483333	3L_15483333_SNP [dm3] 3L_15490233_SNP [dm6]	T	C	9.497e^-6	0.398	INTERGENIC
3L	4737892	3L_4737892_SNP [dm3] 3L_4737892_SNP [dm6]	T	C	9.567e^-6	0.398	INTRON RhoGEF64C
3L	13487564	3L_13487564_SNP [dm3] 3L_13494464_SNP [dm6]	G	T	9.754e^-6	0.398	INTRON Tgi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	16289150	2R_16289150_SNP [dm3] 2R_20401645_SNP [dm6]	G	A	1.020e^-5	0.4	INTERGENIC
2L	8447278	2L_8447278_SNP [dm3] 2L_8447278_SNP [dm6]	T	G	1.029e^-5	0.4	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	8447265	2L_8447265_SNP [dm3] 2L_8447265_SNP [dm6]	A	G	1.051e^-5	0.4	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	15483312	3L_15483312_SNP [dm3] 3L_15490212_SNP [dm6]	A	G	1.066e^-5	0.4	INTERGENIC
3L	712322	3L_712322_SNP [dm3] 3L_712322_SNP [dm6]	A	G	1.092e^-5	0.401	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	2645600	3L_2645600_SNP [dm3] 3L_2645600_SNP [dm6]	A	T	1.148e^-5	0.414	INTRON CG1143	TF binding site mE1_TFBS_cad
3R	24353994	3R_24353994_SNP [dm3] 3R_28528272_SNP [dm6]	G	A	1.266e^-5	0.448	NON_SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14815465	3L_14815465_SNP [dm3] 3L_14822365_SNP [dm6]	G	A	1.305e^-5	0.453	INTRON CG17839
3L	2645866	3L_2645866_SNP [dm3] 3L_2645866_SNP [dm6]	A	G	1.372e^-5	0.468	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17894354	2R_17894354_SNP [dm3] 2R_22006849_SNP [dm6]	A	G	1.397e^-5	0.468	INTRON CG34370
2R	12116819	2R_12116819_SNP [dm3] 2R_16229314_SNP [dm6]	A	G	1.432e^-5	0.471	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	712343	3L_712343_SNP [dm3] 3L_712343_SNP [dm6]	A	C	1.458e^-5	0.471	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	20262267	X_20262267_SNP [dm3] X_20391240_SNP [dm6]	A	G	1.567e^-5	0.498	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16202346	3L_16202346_SNP [dm3] 3L_16209246_SNP [dm6]	C	T	1.689e^-5	0.523	INTERGENIC	TF binding site mE1_TFBS_cad
X	13136787	X_13136787_SNP [dm3] X_13242754_SNP [dm6]	C	T	1.701e^-5	0.523	INTRON mew	TF binding site BDTNP1_TFBS_da
2L	19841437	2L_19841437_SNP [dm3] 2L_19841437_SNP [dm6]	G	A	1.784e^-5	0.539	INTRON sick
3R	21341350	3R_21341350_SNP [dm3] 3R_25515628_SNP [dm6]	G	T	1.873e^-5	0.557	UPSTREAM msi INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	9287766	X_9287766_SNP [dm3] X_9393733_SNP [dm6]	T	C	1.974e^-5	0.569	INTRON mgl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	13137038	X_13137038_SNP [dm3] X_13243005_SNP [dm6]	A	G	2.018e^-5	0.569	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	13137037	X_13137037_SNP [dm3] X_13243004_SNP [dm6]	C	T	2.036e^-5	0.569	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	2.056e^-5	0.569	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	10443026	X_10443026_SNP [dm3] X_10548993_SNP [dm6]	C	T	2.100e^-5	0.569	INTRON spri
3L	7296139	3L_7296139_DEL [dm3] 3L_7303039_DEL [dm6]	AA	A	2.125e^-5	0.569	INTRON unc-13-4A
3L	13557427	3L_13557427_INS [dm3] 3L_13564327_INS [dm6]	G	TA	2.155e^-5	0.569	INTRON bru-3
3L	13557430	3L_13557430_DEL [dm3] 3L_13564330_DEL [dm6]	GTTT	G	2.155e^-5	0.569	INTRON bru-3
3R	13600672	3R_13600672_SNP [dm3] 3R_17774950_SNP [dm6]	C	T	2.203e^-5	0.572	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	2.228e^-5	0.572	EXON CR44950
3R	20231859	3R_20231859_SNP [dm3] 3R_24406137_SNP [dm6]	A	C	2.302e^-5	0.573	INTRON nAChRalpha1
2R	6016574	2R_6016574_SNP [dm3] 2R_10129069_SNP [dm6]	G	A	2.330e^-5	0.573	INTRON gem	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	15483234	3L_15483234_SNP [dm3] 3L_15490134_SNP [dm6]	A	C	2.351e^-5	0.573	INTERGENIC
3R	13139524	3R_13139524_SNP [dm3] 3R_17313802_SNP [dm6]	G	T	2.353e^-5	0.573	INTERGENIC
3R	5709131	3R_5709131_SNP [dm3] 3R_9883409_SNP [dm6]	C	G	2.397e^-5	0.576	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	376777	2L_376777_SNP [dm3] 2L_376777_SNP [dm6]	G	A	2.587e^-5	0.614	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	12970762	3R_12970762_SNP [dm3] 3R_17145040_SNP [dm6]	A	T	2.687e^-5	0.627	UTR_3_PRIME m-cup DOWNSTREAM m-cup
3L	15483232	3L_15483232_SNP [dm3] 3L_15490132_SNP [dm6]	A	T	2.711e^-5	0.627	INTERGENIC
X	17948777	X_17948777_SNP [dm3] X_18054744_SNP [dm6]	G	A	2.869e^-5	0.656	INTRON Sh
3R	4400876	3R_4400876_INS [dm3] 3R_8575154_INS [dm6]	T	TT	2.986e^-5	0.661	INTERGENIC
2L	21921535	2L_21921535_SNP [dm3] 2L_21921535_SNP [dm6]	T	C	3.029e^-5	0.661	INTERGENIC
2R	9147422	2R_9147422_SNP [dm3] 2R_13259917_SNP [dm6]	A	T	3.034e^-5	0.661	UPSTREAM CG42319 INTERGENIC
2L	21802210	2L_21802210_SNP [dm3] 2L_21802210_SNP [dm6]	G	A	3.058e^-5	0.661	INTERGENIC
3R	25570656	3R_25570656_SNP [dm3] 3R_29744934_SNP [dm6]	G	A	3.065e^-5	0.661	SYNONYMOUS_CODING CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14489497	3L_14489497_SNP [dm3] 3L_14496397_SNP [dm6]	T	A	3.106e^-5	0.662	INTRON bbg	TF binding site mE1_TFBS_cad
3L	5886015	3L_5886015_SNP [dm3] 3L_5892915_SNP [dm6]	C	G	3.253e^-5	0.671	INTERGENIC
3L	14489486	3L_14489486_SNP [dm3] 3L_14496386_SNP [dm6]	A	C	3.325e^-5	0.671	INTRON bbg	TF binding site mE1_TFBS_cad
3L	14489495	3L_14489495_SNP [dm3] 3L_14496395_SNP [dm6]	G	A	3.325e^-5	0.671	INTRON bbg	TF binding site mE1_TFBS_cad
3L	15483419	3L_15483419_SNP [dm3] 3L_15490319_SNP [dm6]	T	A	3.335e^-5	0.671	INTERGENIC
3R	5963561	3R_5963561_SNP [dm3] 3R_10137839_SNP [dm6]	T	C	3.363e^-5	0.671	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	4342921	3R_4342921_SNP [dm3] 3R_8517199_SNP [dm6]	C	T	3.365e^-5	0.671	UPSTREAM CG11737 INTERGENIC
X	20215260	X_20215260_SNP [dm3] X_20344233_SNP [dm6]	A	C	3.564e^-5	0.7	INTERGENIC	transposable element FlyBase
2L	16759323	2L_16759323_SNP [dm3] 2L_16759323_SNP [dm6]	C	T	3.697e^-5	0.7	INTRON ppk17
X	17952250	X_17952250_SNP [dm3] X_18058217_SNP [dm6]	G	A	3.728e^-5	0.7	INTRON Sh
3L	7461509	3L_7461509_SNP [dm3] 3L_7468409_SNP [dm6]	G	T	3.744e^-5	0.7	UTR_3_PRIME CG42660 & 2 others
2L	16239804	2L_16239804_SNP [dm3] 2L_16239804_SNP [dm6]	C	T	3.748e^-5	0.7	INTRON CG42817
3L	4737859	3L_4737859_SNP [dm3] 3L_4737859_SNP [dm6]	A	G	3.755e^-5	0.7	INTRON RhoGEF64C
X	17952248	X_17952248_SNP [dm3] X_18058215_SNP [dm6]	C	A	3.769e^-5	0.7	INTRON Sh
3L	1733503	3L_1733503_SNP [dm3] 3L_1733503_SNP [dm6]	G	A	3.830e^-5	0.704	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13415564	2R_13415564_SNP [dm3] 2R_17528059_SNP [dm6]	G	A	3.899e^-5	0.71	SYNONYMOUS_CODING Patronin
3L	13310290	3L_13310290_SNP [dm3] 3L_13317190_SNP [dm6]	T	G	3.984e^-5	0.714	INTERGENIC
3R	4349280	3R_4349280_SNP [dm3] 3R_8523558_SNP [dm6]	T	C	4.074e^-5	0.714	UPSTREAM CG31259 DOWNSTREAM CG31454 INTERGENIC
3R	5129982	3R_5129982_SNP [dm3] 3R_9304260_SNP [dm6]	C	G	4.130e^-5	0.714	INTRON CG8861
2L	19896738	2L_19896738_SNP [dm3] 2L_19896738_SNP [dm6]	T	A	4.133e^-5	0.714	INTRON sick
3L	13553816	3L_13553816_DEL [dm3] 3L_13560716_DEL [dm6]	GTCGACGTAGCGACACT...	G	4.140e^-5	0.714	INTRON bru-3
3L	7479975	3L_7479975_SNP [dm3] 3L_7486875_SNP [dm6]	T	C	4.163e^-5	0.714	SYNONYMOUS_CODING mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19127148	2R_19127148_SNP [dm3] 2R_23239625_SNP [dm6]	T	G	4.283e^-5	0.714	INTERGENIC
3L	412023	3L_412023_SNP [dm3] 3L_412023_SNP [dm6]	G	T	4.331e^-5	0.714	INTERGENIC
3L	11525805	3L_11525805_SNP [dm3] 3L_11532705_SNP [dm6]	G	A	4.386e^-5	0.714	INTRON Mob2
3R	4362491	3R_4362491_SNP [dm3] 3R_8536769_SNP [dm6]	A	G	4.493e^-5	0.714	INTERGENIC
3R	24485802	3R_24485802_SNP [dm3] 3R_28660080_SNP [dm6]	A	G	4.505e^-5	0.714	INTERGENIC
2L	5511194	2L_5511194_SNP [dm3] 2L_5511194_SNP [dm6]	A	C	4.517e^-5	0.714	INTERGENIC
2L	15090507	2L_15090507_SNP [dm3] 2L_15090507_SNP [dm6]	T	C	4.539e^-5	0.714	INTRON CG15270
3L	3966618	3L_3966618_DEL [dm3] 3L_3966618_DEL [dm6]	CCGCTGTCC	C	4.558e^-5	0.714	INTERGENIC
3R	21344585	3R_21344585_SNP [dm3] 3R_25518863_SNP [dm6]	G	T	4.613e^-5	0.714	INTRON msi	TF binding site mE1_TFBS_Trl
3L	2645611	3L_2645611_SNP [dm3] 3L_2645611_SNP [dm6]	C	A	4.624e^-5	0.714	INTRON CG1143	TF binding site mE1_TFBS_cad
3R	14972052	3R_14972052_SNP [dm3] 3R_19146330_SNP [dm6]	A	G	4.658e^-5	0.714	INTRON Ppcs
3L	14489459	3L_14489459_SNP [dm3] 3L_14496359_SNP [dm6]	G	C	4.764e^-5	0.714	INTRON bbg	TF binding site mE1_TFBS_cad
2L	1675714	2L_1675714_SNP [dm3] 2L_1675714_SNP [dm6]	T	A	4.815e^-5	0.714	INTRON chinmo
2L	1675720	2L_1675720_SNP [dm3] 2L_1675720_SNP [dm6]	C	G	4.815e^-5	0.714	INTRON chinmo
3L	4152861	3L_4152861_SNP [dm3] 3L_4152861_SNP [dm6]	G	A	4.895e^-5	0.714	DOWNSTREAM CG1299 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9735039	3L_9735039_SNP [dm3] 3L_9741939_SNP [dm6]	A	T	4.897e^-5	0.714	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9463855	2L_9463855_SNP [dm3] 2L_9463855_SNP [dm6]	C	T	4.957e^-5	0.714	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_kn
3R	10435018	3R_10435018_SNP [dm3] 3R_14609296_SNP [dm6]	T	G	4.984e^-5	0.714	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	13415561	2R_13415561_SNP [dm3] 2R_17528056_SNP [dm6]	A	G	5.008e^-5	0.714	SYNONYMOUS_CODING Patronin
3R	9817342	3R_9817342_INS [dm3] 3R_13991620_INS [dm6]	C	CCATG	5.090e^-5	0.714	INTRON rdx
3R	9817346	3R_9817346_INS [dm3] 3R_13991624_INS [dm6]	T	TGATT	5.090e^-5	0.714	INTRON rdx
2L	19835455	2L_19835455_SNP [dm3] 2L_19835455_SNP [dm6]	A	C	5.167e^-5	0.714	INTRON sick
3L	11927532	3L_11927532_SNP [dm3] 3L_11934432_SNP [dm6]	G	T	5.177e^-5	0.714	SYNONYMOUS_CODING byn INTRON CG44837	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13505970	2R_13505970_SNP [dm3] 2R_17618465_SNP [dm6]	C	A	5.195e^-5	0.714	UPSTREAM CG44403 INTRON CG10936
3R	7278942	3R_7278942_SNP [dm3] 3R_11453220_SNP [dm6]	A	G	5.219e^-5	0.714	SYNONYMOUS_CODING PGRP-LB INTRON CG17230	TF binding site mE1_TFBS_chinmo
3R	13600157	3R_13600157_SNP [dm3] 3R_17774435_SNP [dm6]	T	G	5.247e^-5	0.714	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
2L	7100403	2L_7100403_SNP [dm3] 2L_7100403_SNP [dm6]	G	A	5.273e^-5	0.714	SYNONYMOUS_CODING Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	19941325	2L_19941325_SNP [dm3] 2L_19941325_SNP [dm6]	C	T	5.274e^-5	0.714	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2L	17289541	2L_17289541_SNP [dm3] 2L_17289541_SNP [dm6]	C	T	5.311e^-5	0.714	INTERGENIC
3L	9685669	3L_9685669_SNP [dm3] 3L_9692569_SNP [dm6]	A	G	5.322e^-5	0.714	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	6710275	3L_6710275_SNP [dm3] 3L_6717175_SNP [dm6]	G	A	5.360e^-5	0.714	INTRON ple	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	21802262	2L_21802262_SNP [dm3] 2L_21802262_SNP [dm6]	A	G	5.404e^-5	0.714	INTERGENIC
3R	8388326	3R_8388326_SNP [dm3] 3R_12562604_SNP [dm6]	C	T	5.405e^-5	0.714	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
2L	22909511	2L_22909511_SNP [dm3] 2L_23016779_SNP [dm6]	G	A	5.447e^-5	0.714	INTRON Cht3
3L	413923	3L_413923_SNP [dm3] 3L_413923_SNP [dm6]	A	G	5.499e^-5	0.716	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	13682812	3R_13682812_SNP [dm3] 3R_17857090_SNP [dm6]	G	C	5.633e^-5	0.717	INTRON tinc
3L	1109916	3L_1109916_SNP [dm3] 3L_1109916_SNP [dm6]	C	T	5.700e^-5	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	712501	3L_712501_SNP [dm3] 3L_712501_SNP [dm6]	C	G	5.723e^-5	0.717	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	14565106	3L_14565106_DEL [dm3] 3L_14572006_DEL [dm6]	TT	T	5.754e^-5	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25912708	3R_25912708_SNP [dm3] 3R_30086986_SNP [dm6]	C	A	5.777e^-5	0.717	INTRON sima
2R	9147438	2R_9147438_SNP [dm3] 2R_13259933_SNP [dm6]	G	A	5.842e^-5	0.717	UPSTREAM CG42319 INTERGENIC
X	6643082	X_6643082_INS [dm3] X_6749049_INS [dm6]	A	AACAGAGA	5.854e^-5	0.717	INTRON CG14439
3L	7156753	3L_7156753_SNP [dm3] 3L_7163653_SNP [dm6]	G	A	5.909e^-5	0.717	INTRON Dscam2
3L	7156769	3L_7156769_SNP [dm3] 3L_7163669_SNP [dm6]	G	A	5.909e^-5	0.717	INTRON Dscam2
3R	25588806	3R_25588806_SNP [dm3] 3R_29763084_SNP [dm6]	A	G	5.990e^-5	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24362223	3R_24362223_SNP [dm3] 3R_28536501_SNP [dm6]	C	T	6.020e^-5	0.717	INTRON Ppn
2R	18278806	2R_18278806_SNP [dm3] 2R_22391301_SNP [dm6]	A	G	6.046e^-5	0.717	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14489354	3L_14489354_SNP [dm3] 3L_14496254_SNP [dm6]	T	A	6.060e^-5	0.717	INTRON bbg	TF binding site mE1_TFBS_cad
2R	15895215	2R_15895215_SNP [dm3] 2R_20007710_SNP [dm6]	T	C	6.108e^-5	0.717	DOWNSTREAM CR44628 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	23141757	3R_23141757_SNP [dm3] 3R_27316035_SNP [dm6]	T	A	6.118e^-5	0.717	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	11598183	2R_11598183_SNP [dm3] 2R_15710678_SNP [dm6]	A	G	6.233e^-5	0.717	DOWNSTREAM CG30083 INTERGENIC
2R	8133682	2R_8133682_SNP [dm3] 2R_12246177_SNP [dm6]	T	A	6.251e^-5	0.717	DOWNSTREAM CR44315 INTERGENIC
2L	8447795	2L_8447795_SNP [dm3] 2L_8447795_SNP [dm6]	C	T	6.253e^-5	0.717	SYNONYMOUS_CODING U26 UTR_3_PRIME U26
X	11409403	X_11409403_SNP [dm3] X_11515370_SNP [dm6]	A	T	6.321e^-5	0.717	INTRON Drak	TF binding site mE1_TFBS_Kr
3R	4340520	3R_4340520_SNP [dm3] 3R_8514798_SNP [dm6]	T	A	6.359e^-5	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	2669602	2L_2669602_SNP [dm3] 2L_2669602_SNP [dm6]	G	T	6.421e^-5	0.717	UPSTREAM Gr23a INTERGENIC
3R	17455708	3R_17455708_SNP [dm3] 3R_21629986_SNP [dm6]	G	T	6.427e^-5	0.717	INTRON E2f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	17952258	X_17952258_SNP [dm3] X_18058225_SNP [dm6]	C	A	6.465e^-5	0.717	INTRON Sh
2L	8448106	2L_8448106_SNP [dm3] 2L_8448106_SNP [dm6]	G	A	6.510e^-5	0.717	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9817323	3R_9817323_SNP [dm3] 3R_13991601_SNP [dm6]	T	A	6.598e^-5	0.717	INTRON rdx
2L	1381522	2L_1381522_SNP [dm3] 2L_1381522_SNP [dm6]	T	C	6.615e^-5	0.717	SYNONYMOUS_CODING lea UTR_3_PRIME lea UPSTREAM CR44898 EXON CR44897	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	3126389	2L_3126389_SNP [dm3] 2L_3126389_SNP [dm6]	C	T	6.617e^-5	0.717	NON_SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	20821277	3L_20821277_SNP [dm3] 3L_20828177_SNP [dm6]	C	T	6.683e^-5	0.717	UTR_5_PRIME Pka-R1 UPSTREAM Pka-R1 INTRON Pka-R1
X	20262270	X_20262270_INS [dm3] X_20391243_INS [dm6]	A	ATCAATAATAATTCAA...	6.693e^-5	0.717	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13554079	3L_13554079_SNP [dm3] 3L_13560979_SNP [dm6]	G	A	6.731e^-5	0.717	INTRON bru-3
3L	8518986	3L_8518986_SNP [dm3] 3L_8525886_SNP [dm6]	A	C	6.796e^-5	0.717	INTRON foi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	24412989	3R_24412989_SNP [dm3] 3R_28587267_SNP [dm6]	T	C	6.812e^-5	0.717	EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	8137681	2R_8137681_SNP [dm3] 2R_12250176_SNP [dm6]	A	C	6.812e^-5	0.717	INTERGENIC
2R	11724908	2R_11724908_SNP [dm3] 2R_15837403_SNP [dm6]	C	T	6.833e^-5	0.717	INTRON tun	regulatory region REDfly_CRMs
2R	19337409	2R_19337409_SNP [dm3] 2R_23449886_SNP [dm6]	G	A	6.842e^-5	0.717	INTRON CG43795
3L	14489439	3L_14489439_SNP [dm3] 3L_14496339_SNP [dm6]	A	G	7.320e^-5	0.748	INTRON bbg	TF binding site mE1_TFBS_cad
2L	19890129	2L_19890129_SNP [dm3] 2L_19890129_SNP [dm6]	G	A	7.368e^-5	0.748	DOWNSTREAM CG10481 INTRON sick
3L	13310271	3L_13310271_SNP [dm3] 3L_13317171_SNP [dm6]	C	T	7.461e^-5	0.748	INTERGENIC
2R	16340634	2R_16340634_SNP [dm3] 2R_20453129_SNP [dm6]	A	G	7.468e^-5	0.748	INTRON CG12484
3R	13600041	3R_13600041_SNP [dm3] 3R_17774319_SNP [dm6]	C	T	7.492e^-5	0.748	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
2L	8448676	2L_8448676_SNP [dm3] 2L_8448676_SNP [dm6]	G	T	7.563e^-5	0.748	SYNONYMOUS_CODING U26
3L	3966395	3L_3966395_SNP [dm3] 3L_3966395_SNP [dm6]	C	T	7.653e^-5	0.748	INTERGENIC
3L	14489373	3L_14489373_SNP [dm3] 3L_14496273_SNP [dm6]	C	T	7.657e^-5	0.748	INTRON bbg	TF binding site mE1_TFBS_cad
3L	15483252	3L_15483252_SNP [dm3] 3L_15490152_SNP [dm6]	G	T	7.671e^-5	0.748	INTERGENIC
X	5228937	X_5228937_INS [dm3] X_5334904_INS [dm6]	C	CTACACTCGCAAAAAAAAAA...	7.686e^-5	0.748	DOWNSTREAM CanB INTERGENIC
3R	7278969	3R_7278969_SNP [dm3] 3R_11453247_SNP [dm6]	A	G	7.774e^-5	0.748	SYNONYMOUS_CODING PGRP-LB INTRON CG17230	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19890116	2L_19890116_SNP [dm3] 2L_19890116_SNP [dm6]	T	A	7.835e^-5	0.748	DOWNSTREAM CG10481 INTRON sick
2L	22020494	2L_22020494_SNP [dm3] 2L_22020494_SNP [dm6]	A	G	7.849e^-5	0.748	DOWNSTREAM CR33987 INTRON tio	TF binding site mE1_TFBS_Trl
2R	11576437	2R_11576437_SNP [dm3] 2R_15688932_SNP [dm6]	T	C	7.929e^-5	0.748	NON_SYNONYMOUS_CODING Cep89 UPSTREAM CG30090	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23141761	3R_23141761_INS [dm3] 3R_27316039_INS [dm6]	G	GG	7.958e^-5	0.748	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	4841343	3L_4841343_SNP [dm3] 3L_4841343_SNP [dm6]	A	C	8.031e^-5	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	25570751	3R_25570751_SNP [dm3] 3R_29745029_SNP [dm6]	A	C	8.069e^-5	0.748	START_GAINED CG7609 UTR_5_PRIME CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19840286	2L_19840286_SNP [dm3] 2L_19840286_SNP [dm6]	C	A	8.099e^-5	0.748	INTRON sick
3L	16202254	3L_16202254_SNP [dm3] 3L_16209154_SNP [dm6]	C	T	8.101e^-5	0.748	INTERGENIC	TF binding site mE1_TFBS_cad
X	3035763	X_3035763_DEL [dm3] X_3141730_DEL [dm6]	GG	G	8.107e^-5	0.748	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	388595	2L_388595_SNP [dm3] 2L_388595_SNP [dm6]	G	T	8.120e^-5	0.748	INTERGENIC
3R	24413164	3R_24413164_SNP [dm3] 3R_28587442_SNP [dm6]	C	T	8.181e^-5	0.748	EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	22780339	3R_22780339_SNP [dm3] 3R_26954617_SNP [dm6]	T	C	8.181e^-5	0.748	INTRON CG6330	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	4093952	X_4093952_SNP [dm3] X_4199919_SNP [dm6]	A	T	8.238e^-5	0.748	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	6788786	X_6788786_SNP [dm3] X_6894753_SNP [dm6]	A	C	8.287e^-5	0.748	INTERGENIC
2L	8447066	2L_8447066_SNP [dm3] 2L_8447066_SNP [dm6]	C	G	8.312e^-5	0.748	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_inv
X	17952263	X_17952263_SNP [dm3] X_18058230_SNP [dm6]	A	G	8.329e^-5	0.748	INTRON Sh
3L	14489539	3L_14489539_INS [dm3] 3L_14496439_INS [dm6]	A	ATTTTCTA	8.377e^-5	0.748	INTRON bbg
3L	13272867	3L_13272867_SNP [dm3] 3L_13279767_SNP [dm6]	A	G	8.426e^-5	0.748	UPSTREAM tRNA:CR32123:Psi DOWNSTREAM caps INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13549841	3L_13549841_SNP [dm3] 3L_13556741_SNP [dm6]	A	G	8.431e^-5	0.748	INTRON bru-3
2L	19808957	2L_19808957_SNP [dm3] 2L_19808957_SNP [dm6]	T	A	8.442e^-5	0.748	INTRON sick	TF binding site mE1_TFBS_cad
X	19421607	X_19421607_DEL [dm3] X_19527574_DEL [dm6]	CAC	C	8.448e^-5	0.748	UPSTREAM CoRest INTRON CoRest	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7467554	3L_7467554_SNP [dm3] 3L_7474454_SNP [dm6]	G	A	8.472e^-5	0.748	INTERGENIC
3L	837693	3L_837693_SNP [dm3] 3L_837693_SNP [dm6]	A	C	8.541e^-5	0.748	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2R	6016548	2R_6016548_SNP [dm3] 2R_10129043_SNP [dm6]	C	T	8.577e^-5	0.748	INTRON gem	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	14695058	2L_14695058_SNP [dm3] 2L_14695058_SNP [dm6]	G	A	8.598e^-5	0.748	INTERGENIC
2R	8908601	2R_8908601_SNP [dm3] 2R_13021096_SNP [dm6]	T	A	8.703e^-5	0.748	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9661315	3L_9661315_SNP [dm3] 3L_9668215_SNP [dm6]	A	G	8.743e^-5	0.748	INTRON fry	TF binding site mE1_TFBS_cad
2L	19802428	2L_19802428_SNP [dm3] 2L_19802428_SNP [dm6]	A	G	8.856e^-5	0.748	INTRON sick
X	19011939	X_19011939_SNP [dm3] X_19117906_SNP [dm6]	C	A	8.865e^-5	0.748	INTERGENIC
X	14305173	X_14305173_SNP [dm3] X_14411140_SNP [dm6]	C	A	8.912e^-5	0.748	INTRON dpr8
2L	19901797	2L_19901797_DEL [dm3] 2L_19901797_DEL [dm6]	TAAAAACAAAA...	T	8.978e^-5	0.748	INTRON sick
3R	10410917	3R_10410917_SNP [dm3] 3R_14585195_SNP [dm6]	A	T	9.050e^-5	0.748	INTRON stumps	TF binding site BDTNP1_TFBS_prd
2L	2389910	2L_2389910_SNP [dm3] 2L_2389910_SNP [dm6]	A	G	9.082e^-5	0.748	SYNONYMOUS_CODING CG43750
3L	9661317	3L_9661317_SNP [dm3] 3L_9668217_SNP [dm6]	A	G	9.085e^-5	0.748	INTRON fry	TF binding site mE1_TFBS_cad
X	10543785	X_10543785_SNP [dm3] X_10649752_SNP [dm6]	T	C	9.125e^-5	0.748	INTRON X11Lbeta
3L	16202260	3L_16202260_SNP [dm3] 3L_16209160_SNP [dm6]	A	C	9.126e^-5	0.748	INTERGENIC	TF binding site mE1_TFBS_cad
X	17952259	X_17952259_SNP [dm3] X_18058226_SNP [dm6]	T	C	9.185e^-5	0.748	INTRON Sh
X	8156894	X_8156894_INS [dm3] X_8262861_INS [dm6]	T	TTCCACGCTCCGAACCAAAT...	9.187e^-5	0.748	INTRON CG1632	TF binding site BDTNP1_TFBS_da
2R	4950454	2R_4950454_SNP [dm3] 2R_9062949_SNP [dm6]	G	A	9.218e^-5	0.748	INTRON ana	regulatory region REDfly_CRMs
3R	12971257	3R_12971257_SNP [dm3] 3R_17145535_SNP [dm6]	A	C	9.221e^-5	0.748	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3R	12971260	3R_12971260_DEL [dm3] 3R_17145538_DEL [dm6]	AGGTAAGCATCCTA...	G	9.221e^-5	0.748	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
2L	16239657	2L_16239657_SNP [dm3] 2L_16239657_SNP [dm6]	C	T	9.324e^-5	0.75	INTRON CG42817
3R	25405876	3R_25405876_SNP [dm3] 3R_29580154_SNP [dm6]	A	G	9.408e^-5	0.75	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	20215452	X_20215452_INS [dm3] X_20344425_INS [dm6]	AC	TTATGCCG	9.445e^-5	0.75	INTERGENIC
X	5452736	X_5452736_SNP [dm3] X_5558703_SNP [dm6]	C	T	9.456e^-5	0.75	INTRON Vsx2
2L	5758264	2L_5758264_SNP [dm3] 2L_5758264_SNP [dm6]	A	C	9.469e^-5	0.75	INTRON CG11030	TF binding site mE1_TFBS_cad
X	11121667	X_11121667_SNP [dm3] X_11227634_SNP [dm6]	T	C	9.562e^-5	0.75	INTRON CG44422
X	9638379	X_9638379_SNP [dm3] X_9744346_SNP [dm6]	T	C	9.587e^-5	0.75	INTRON Sp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6463898	2L_6463898_SNP [dm3] 2L_6463898_SNP [dm6]	A	T	9.687e^-5	0.75	UTR_5_PRIME CG16947	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	8366265	2R_8366265_SNP [dm3] 2R_12478760_SNP [dm6]	A	C	9.733e^-5	0.75	INTRON Dh44-R2
2L	2863927	2L_2863927_SNP [dm3] 2L_2863927_SNP [dm6]	C	T	9.787e^-5	0.75	INTRON CG2991	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	677700	3L_677700_SNP [dm3] 3L_677700_SNP [dm6]	T	A	9.940e^-5	0.75	DOWNSTREAM CG17129 INTERGENIC
2L	16033629	2L_16033629_SNP [dm3] 2L_16033629_SNP [dm6]	A	T	9.958e^-5	0.75	INTRON beat-Ic
3R	18478605	3R_18478605_SNP [dm3] 3R_22652883_SNP [dm6]	T	A	1.007e^-4	0.75	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8134266	2R_8134266_SNP [dm3] 2R_12246761_SNP [dm6]	C	T	1.008e^-4	0.75	EXON CR44315
2R	9147482	2R_9147482_SNP [dm3] 2R_13259977_SNP [dm6]	A	G	1.018e^-4	0.75	UPSTREAM CG42319 INTERGENIC
2L	19898638	2L_19898638_SNP [dm3] 2L_19898638_SNP [dm6]	G	A	1.025e^-4	0.75	INTRON sick
2L	387696	2L_387696_SNP [dm3] 2L_387696_SNP [dm6]	T	A	1.030e^-4	0.75	DOWNSTREAM al INTERGENIC
3L	7480613	3L_7480613_SNP [dm3] 3L_7487513_SNP [dm6]	A	G	1.031e^-4	0.75	INTRON mthl6
3L	13924066	3L_13924066_SNP [dm3] 3L_13930966_SNP [dm6]	G	A	1.038e^-4	0.75	NON_SYNONYMOUS_CODING Gl	TF binding site mE1_TFBS_cad
2R	9147155	2R_9147155_SNP [dm3] 2R_13259650_SNP [dm6]	A	T	1.041e^-4	0.75	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3R	18478641	3R_18478641_SNP [dm3] 3R_22652919_SNP [dm6]	G	T	1.045e^-4	0.75	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2926031	X_2926031_SNP [dm3] X_3031998_SNP [dm6]	C	A	1.051e^-4	0.75	INTRON kirre
2L	19079237	2L_19079237_SNP [dm3] 2L_19079237_SNP [dm6]	C	T	1.060e^-4	0.75	UPSTREAM CG10700 DOWNSTREAM Lim3 INTERGENIC
3L	15483280	3L_15483280_SNP [dm3] 3L_15490180_SNP [dm6]	T	C	1.063e^-4	0.75	INTERGENIC
2R	7107070	2R_7107070_SNP [dm3] 2R_11219565_SNP [dm6]	T	C	1.073e^-4	0.75	UTR_5_PRIME Syx6 UPSTREAM Syx6 & 1 other INTRON CG9084	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	21851919	2L_21851919_INS [dm3] 2L_21851919_INS [dm6]	T	TTCT	1.073e^-4	0.75	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	17353856	3R_17353856_SNP [dm3] 3R_21528134_SNP [dm6]	C	T	1.074e^-4	0.75	UTR_3_PRIME CG7956 DOWNSTREAM CG7956	TF binding site BDTNP1_TFBS_slp1
X	20215420	X_20215420_SNP [dm3] X_20344393_SNP [dm6]	A	G	1.076e^-4	0.75	INTERGENIC
3L	13310278	3L_13310278_SNP [dm3] 3L_13317178_SNP [dm6]	C	G	1.077e^-4	0.75	INTERGENIC
3L	15483205	3L_15483205_SNP [dm3] 3L_15490105_SNP [dm6]	G	A	1.082e^-4	0.75	INTERGENIC
3L	17193388	3L_17193388_SNP [dm3] 3L_17200288_SNP [dm6]	T	A	1.083e^-4	0.75	INTRON Rbp6
3R	20231634	3R_20231634_SNP [dm3] 3R_24405912_SNP [dm6]	G	A	1.083e^-4	0.75	INTRON nAChRalpha1
X	17946678	X_17946678_SNP [dm3] X_18052645_SNP [dm6]	G	T	1.087e^-4	0.75	INTRON Sh	TF binding site BDTNP1_TFBS_dl
2L	9487588	2L_9487588_SNP [dm3] 2L_9487588_SNP [dm6]	A	G	1.090e^-4	0.75	INTERGENIC
2R	11573868	2R_11573868_SNP [dm3] 2R_15686363_SNP [dm6]	C	T	1.093e^-4	0.75	SYNONYMOUS_CODING Ranbp11 UPSTREAM CG30082	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3L	712066	3L_712066_SNP [dm3] 3L_712066_SNP [dm6]	G	A	1.096e^-4	0.75	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	19522029	2L_19522029_SNP [dm3] 2L_19522029_SNP [dm6]	C	T	1.100e^-4	0.75	SYNONYMOUS_CODING CG10132	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4159131	3L_4159131_DEL [dm3] 3L_4159131_DEL [dm6]	GG	G	1.105e^-4	0.75	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	837739	3L_837739_INS [dm3] 3L_837739_INS [dm6]	T	TA	1.105e^-4	0.75	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	13488539	3L_13488539_SNP [dm3] 3L_13495439_SNP [dm6]	C	T	1.107e^-4	0.75	UPSTREAM Tgi INTRON Tgi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19200358	3R_19200358_SNP [dm3] 3R_23374636_SNP [dm6]	A	G	1.127e^-4	0.75	DOWNSTREAM CG42828 INTERGENIC
2R	20161899	2R_20161899_SNP [dm3] 2R_24274376_SNP [dm6]	G	A	1.128e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	12055410	3L_12055410_SNP [dm3] 3L_12062310_SNP [dm6]	C	T	1.135e^-4	0.75	INTRON rols	TF binding site BDTNP1_TFBS_da
2R	8372456	2R_8372456_SNP [dm3] 2R_12484951_SNP [dm6]	C	T	1.137e^-4	0.75	INTRON Dh44-R2
2L	21805871	2L_21805871_SNP [dm3] 2L_21805871_SNP [dm6]	G	C	1.138e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	3599792	2R_3599792_SNP [dm3] 2R_7712287_SNP [dm6]	A	G	1.148e^-4	0.75	UPSTREAM CG1942 DOWNSTREAM mir-4909 & 1 other INTERGENIC
3R	15213950	3R_15213950_SNP [dm3] 3R_19388228_SNP [dm6]	G	A	1.150e^-4	0.75	DOWNSTREAM CR34285 INTRON Ino80 & 1 other	TF binding site mE1_TFBS_sens
3L	14385307	3L_14385307_SNP [dm3] 3L_14392207_SNP [dm6]	A	G	1.155e^-4	0.75	INTERGENIC
X	20561606	X_20561606_SNP [dm3] X_20690579_SNP [dm6]	C	T	1.155e^-4	0.75	UPSTREAM run EXON CR45610	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	21795611	2L_21795611_SNP [dm3] 2L_21795611_SNP [dm6]	C	G	1.163e^-4	0.75	UPSTREAM CG31612 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
3L	16824644	3L_16824644_SNP [dm3] 3L_16831544_SNP [dm6]	A	G	1.164e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_inv
3R	4339924	3R_4339924_SNP [dm3] 3R_8514202_SNP [dm6]	A	G	1.166e^-4	0.75	INTERGENIC
2L	19822550	2L_19822550_SNP [dm3] 2L_19822550_SNP [dm6]	A	C	1.170e^-4	0.75	INTRON sick
3R	5121979	3R_5121979_SNP [dm3] 3R_9296257_SNP [dm6]	T	G	1.173e^-4	0.75	INTRON CG8861
3L	14561384	3L_14561384_SNP [dm3] 3L_14568284_SNP [dm6]	G	A	1.176e^-4	0.75	DOWNSTREAM CG42758 INTERGENIC
2L	3437649	2L_3437649_SNP [dm3] 2L_3437649_SNP [dm6]	A	T	1.195e^-4	0.75	INTERGENIC
2R	18933150	2R_18933150_SNP [dm3] 2R_23045627_SNP [dm6]	C	T	1.200e^-4	0.75	UPSTREAM twi INTRON twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	9147435	2R_9147435_SNP [dm3] 2R_13259930_SNP [dm6]	T	A	1.205e^-4	0.75	UPSTREAM CG42319 INTERGENIC
2L	9103236	2L_9103236_SNP [dm3] 2L_9103236_SNP [dm6]	C	T	1.205e^-4	0.75	INTERGENIC
2L	19960413	2L_19960413_SNP [dm3] 2L_19960413_SNP [dm6]	C	T	1.208e^-4	0.75	SYNONYMOUS_CODING CG34051 DOWNSTREAM CoIV & 1 other	TF binding site mE1_TFBS_sens
X	5702342	X_5702342_SNP [dm3] X_5808309_SNP [dm6]	G	A	1.212e^-4	0.75	UPSTREAM Prosbeta2R1 INTERGENIC
3L	17784937	3L_17784937_SNP [dm3] 3L_17791837_SNP [dm6]	C	A	1.218e^-4	0.75	UPSTREAM CG42815 DOWNSTREAM CG42816 INTERGENIC
2L	13211544	2L_13211544_SNP [dm3] 2L_13211544_SNP [dm6]	T	C	1.222e^-4	0.75	NON_SYNONYMOUS_CODING CG15482 DOWNSTREAM Pect & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9823760	3R_9823760_SNP [dm3] 3R_13998038_SNP [dm6]	T	C	1.223e^-4	0.75	INTRON rdx	TF binding site mE1_TFBS_HSA
2L	19940949	2L_19940949_SNP [dm3] 2L_19940949_SNP [dm6]	A	T	1.224e^-4	0.75	INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8391972	3L_8391972_SNP [dm3] 3L_8398872_SNP [dm6]	A	T	1.225e^-4	0.75	INTRON CG7120
3L	14919578	3L_14919578_SNP [dm3] 3L_14926478_SNP [dm6]	A	G	1.232e^-4	0.75	UTR_5_PRIME DCX-EMAP INTRON DCX-EMAP
2L	648426	2L_648426_SNP [dm3] 2L_648426_SNP [dm6]	C	T	1.236e^-4	0.75	INTRON ds
2L	4624701	2L_4624701_SNP [dm3] 2L_4624701_SNP [dm6]	C	T	1.236e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	22306203	2L_22306203_SNP [dm3] 2L_22306203_SNP [dm6]	T	C	1.246e^-4	0.75	INTERGENIC
2R	11481430	2R_11481430_SNP [dm3] 2R_15593925_SNP [dm6]	T	C	1.249e^-4	0.75	INTERGENIC
2R	11804667	2R_11804667_SNP [dm3] 2R_15917162_SNP [dm6]	T	G	1.256e^-4	0.75	DOWNSTREAM CR44373 INTRON sli	TF binding site mE1_TFBS_cad
2R	15874958	2R_15874958_SNP [dm3] 2R_19987453_SNP [dm6]	G	A	1.259e^-4	0.75	INTERGENIC
2R	18817694	2R_18817694_SNP [dm3] 2R_22930171_SNP [dm6]	A	G	1.263e^-4	0.75	DOWNSTREAM CG42678 INTRON CG42678	TF binding site mE1_TFBS_inv
3L	411916	3L_411916_SNP [dm3] 3L_411916_SNP [dm6]	A	G	1.265e^-4	0.75	INTERGENIC
2L	21846992	2L_21846992_SNP [dm3] 2L_21846992_SNP [dm6]	A	C	1.272e^-4	0.75	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6962276	2R_6962276_SNP [dm3] 2R_11074771_SNP [dm6]	A	G	1.272e^-4	0.75	INTRON luna
3R	4339621	3R_4339621_SNP [dm3] 3R_8513899_SNP [dm6]	C	G	1.280e^-4	0.75	UPSTREAM Or85c INTERGENIC
X	3035757	X_3035757_SNP [dm3] X_3141724_SNP [dm6]	A	T	1.285e^-4	0.75	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	16239646	2L_16239646_SNP [dm3] 2L_16239646_SNP [dm6]	T	C	1.291e^-4	0.75	INTRON CG42817
3L	837662	3L_837662_SNP [dm3] 3L_837662_SNP [dm6]	A	C	1.293e^-4	0.75	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	9685627	3L_9685627_SNP [dm3] 3L_9692527_SNP [dm6]	A	G	1.299e^-4	0.75	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	9685634	3L_9685634_SNP [dm3] 3L_9692534_SNP [dm6]	C	T	1.299e^-4	0.75	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	9686029	3L_9686029_SNP [dm3] 3L_9692929_SNP [dm6]	A	T	1.299e^-4	0.75	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
3L	9686121	3L_9686121_SNP [dm3] 3L_9693021_SNP [dm6]	T	A	1.299e^-4	0.75	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
3L	5694802	3L_5694802_SNP [dm3] 3L_5701702_SNP [dm6]	T	G	1.311e^-4	0.75	INTRON sif
3L	1734655	3L_1734655_SNP [dm3] 3L_1734655_SNP [dm6]	G	A	1.331e^-4	0.75	SYNONYMOUS_CODING Oseg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26671686	3R_26671686_SNP [dm3] 3R_30845964_SNP [dm6]	T	A	1.334e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	11571818	2R_11571818_SNP [dm3] 2R_15684313_SNP [dm6]	C	T	1.351e^-4	0.75	SYNONYMOUS_CODING Ranbp11 DOWNSTREAM CG30082 EXON CR43429	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1103352	3L_1103352_INS [dm3] 3L_1103352_INS [dm6]	T	TGTAT	1.353e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	10702270	3L_10702270_SNP [dm3] 3L_10709170_SNP [dm6]	C	A	1.353e^-4	0.75	INTERGENIC
3L	20187373	3L_20187373_SNP [dm3] 3L_20194273_SNP [dm6]	G	T	1.362e^-4	0.75	INTRON CG42674
X	4461691	X_4461691_SNP [dm3] X_4567658_SNP [dm6]	G	A	1.364e^-4	0.75	INTRON CR32773
3L	14376180	3L_14376180_SNP [dm3] 3L_14383080_SNP [dm6]	C	T	1.366e^-4	0.75	UTR_3_PRIME CG43120
2L	18885261	2L_18885261_SNP [dm3] 2L_18885261_SNP [dm6]	C	G	1.373e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	15767069	3R_15767069_SNP [dm3] 3R_19941347_SNP [dm6]	G	A	1.382e^-4	0.75	INTRON Hs6st
3L	9686313	3L_9686313_SNP [dm3] 3L_9693213_SNP [dm6]	C	A	1.383e^-4	0.75	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
X	21923107	X_21923107_SNP [dm3] X_22521271_SNP [dm6]	A	C	1.385e^-4	0.75	INTRON CG17600
X	6643083	X_6643083_INS [dm3] X_6749050_INS [dm6]	T	TCAGAGAT	1.387e^-4	0.75	INTRON CG14439
3R	25570840	3R_25570840_SNP [dm3] 3R_29745118_SNP [dm6]	C	T	1.395e^-4	0.75	UPSTREAM IntS11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1732632	3L_1732632_SNP [dm3] 3L_1732632_SNP [dm6]	A	G	1.396e^-4	0.75	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1730245	3L_1730245_SNP [dm3] 3L_1730245_SNP [dm6]	A	G	1.399e^-4	0.75	DOWNSTREAM Oseg4 INTRON drpr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	15488893	3L_15488893_DEL [dm3] 3L_15495793_DEL [dm6]	TCT	T	1.401e^-4	0.75	UPSTREAM CG12355 & 1 other INTERGENIC
X	17061765	X_17061765_SNP [dm3] X_17167732_SNP [dm6]	C	G	1.401e^-4	0.75	INTRON baz
X	17061777	X_17061777_SNP [dm3] X_17167744_SNP [dm6]	G	T	1.401e^-4	0.75	INTRON baz
X	17061793	X_17061793_SNP [dm3] X_17167760_SNP [dm6]	A	T	1.401e^-4	0.75	INTRON baz
X	17061814	X_17061814_DEL [dm3] X_17167781_DEL [dm6]	CAAGCTAAC	C	1.401e^-4	0.75	INTRON baz
3L	9661340	3L_9661340_SNP [dm3] 3L_9668240_SNP [dm6]	C	G	1.402e^-4	0.75	INTRON fry	TF binding site mE1_TFBS_cad
2L	17289532	2L_17289532_SNP [dm3] 2L_17289532_SNP [dm6]	A	C	1.402e^-4	0.75	INTERGENIC
2R	12281986	2R_12281986_SNP [dm3] 2R_16394481_SNP [dm6]	A	T	1.407e^-4	0.75	INTRON Sema-2b
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	1.408e^-4	0.75	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
X	13020176	X_13020176_SNP [dm3] X_13126143_SNP [dm6]	T	C	1.410e^-4	0.75	SYNONYMOUS_CODING CG32638
3L	1103387	3L_1103387_SNP [dm3] 3L_1103387_SNP [dm6]	C	T	1.414e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	6016861	2R_6016861_SNP [dm3] 2R_10129356_SNP [dm6]	T	G	1.415e^-4	0.75	INTRON gem
2R	15428091	2R_15428091_SNP [dm3] 2R_19540586_SNP [dm6]	C	A	1.418e^-4	0.75	INTRON sm
3R	3963291	3R_3963291_SNP [dm3] 3R_8137569_SNP [dm6]	C	G	1.421e^-4	0.75	INTERGENIC
3L	13339531	3L_13339531_SNP [dm3] 3L_13346431_SNP [dm6]	G	T	1.421e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14385310	3L_14385310_INS [dm3] 3L_14392210_INS [dm6]	T	TGCTCTTAA	1.423e^-4	0.75	INTERGENIC
2L	13637068	2L_13637068_SNP [dm3] 2L_13637068_SNP [dm6]	A	C	1.431e^-4	0.75	DOWNSTREAM kuz INTRON kuz
X	10569471	X_10569471_SNP [dm3] X_10675438_SNP [dm6]	A	C	1.437e^-4	0.75	INTRON X11Lbeta
2L	9463889	2L_9463889_DEL [dm3] 2L_9463889_DEL [dm6]	CA	G	1.440e^-4	0.75	UTR_3_PRIME numb DOWNSTREAM numb
2L	2021719	2L_2021719_SNP [dm3] 2L_2021719_SNP [dm6]	G	A	1.444e^-4	0.75	INTRON CG4238
2R	8134408	2R_8134408_SNP [dm3] 2R_12246903_SNP [dm6]	G	T	1.448e^-4	0.75	EXON CR44315
3L	1731975	3L_1731975_SNP [dm3] 3L_1731975_SNP [dm6]	C	T	1.449e^-4	0.75	SYNONYMOUS_CODING Oseg4 UPSTREAM drpr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11809705	2R_11809705_SNP [dm3] 2R_15922200_SNP [dm6]	G	A	1.453e^-4	0.75	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
3L	7461504	3L_7461504_SNP [dm3] 3L_7468404_SNP [dm6]	A	C	1.454e^-4	0.75	UTR_3_PRIME CG42660 & 2 others
3L	1734509	3L_1734509_SNP [dm3] 3L_1734509_SNP [dm6]	G	A	1.462e^-4	0.75	SYNONYMOUS_CODING Oseg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	837721	3L_837721_SNP [dm3] 3L_837721_SNP [dm6]	C	G	1.464e^-4	0.75	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
X	5256720	X_5256720_SNP [dm3] X_5362687_SNP [dm6]	C	T	1.465e^-4	0.75	INTRON SK
X	17952247	X_17952247_SNP [dm3] X_18058214_SNP [dm6]	A	C	1.465e^-4	0.75	INTRON Sh
3L	1734436	3L_1734436_SNP [dm3] 3L_1734436_SNP [dm6]	A	G	1.467e^-4	0.75	SPLICE_SITE_REGION Oseg4 INTRON Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	21946768	X_21946768_SNP [dm3] X_22544932_SNP [dm6]	T	C	1.472e^-4	0.75	UPSTREAM CG17599 INTERGENIC
X	7620847	X_7620847_SNP [dm3] X_7726814_SNP [dm6]	T	C	1.477e^-4	0.75	SYNONYMOUS_CODING NELF-B DOWNSTREAM Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5883882	2L_5883882_SNP [dm3] 2L_5883882_SNP [dm6]	C	A	1.478e^-4	0.75	NON_SYNONYMOUS_CODING CG44574 DOWNSTREAM Sfp26Ac
3L	12450024	3L_12450024_SNP [dm3] 3L_12456924_SNP [dm6]	G	A	1.485e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	10435009	3R_10435009_SNP [dm3] 3R_14609287_SNP [dm6]	C	A	1.487e^-4	0.75	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17696524	2R_17696524_SNP [dm3] 2R_21809019_SNP [dm6]	T	C	1.490e^-4	0.75	INTERGENIC
2L	14689608	2L_14689608_SNP [dm3] 2L_14689608_SNP [dm6]	A	G	1.490e^-4	0.75	UPSTREAM osp INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	13242799	2R_13242799_SNP [dm3] 2R_17355294_SNP [dm6]	T	G	1.494e^-4	0.75	INTRON mbl
3R	22858373	3R_22858373_SNP [dm3] 3R_27032651_SNP [dm6]	T	G	1.495e^-4	0.75	INTRON RYa-R	TF binding site mE1_TFBS_HSA
X	21063578	X_21063578_SNP [dm3] X_21192551_SNP [dm6]	G	A	1.502e^-4	0.75	UPSTREAM CG14579 INTERGENIC
2R	11724775	2R_11724775_SNP [dm3] 2R_15837270_SNP [dm6]	A	G	1.504e^-4	0.75	INTRON tun	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	14815037	3L_14815037_SNP [dm3] 3L_14821937_SNP [dm6]	A	C	1.505e^-4	0.75	INTRON CG17839
X	20262315	X_20262315_DEL [dm3] X_20391288_DEL [dm6]	TGATGTTTCTTAT...	T	1.511e^-4	0.75	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2645081	3L_2645081_SNP [dm3] 3L_2645081_SNP [dm6]	A	G	1.513e^-4	0.75	UPSTREAM CG1143 INTERGENIC
2L	19903507	2L_19903507_SNP [dm3] 2L_19903507_SNP [dm6]	C	T	1.518e^-4	0.75	INTRON sick
2L	17333598	2L_17333598_SNP [dm3] 2L_17333598_SNP [dm6]	G	A	1.530e^-4	0.75	INTERGENIC
3L	14489501	3L_14489501_DEL [dm3] 3L_14496401_DEL [dm6]	TA	T	1.533e^-4	0.75	INTRON bbg	TF binding site mE1_TFBS_cad
X	8156849	X_8156849_SNP [dm3] X_8262816_SNP [dm6]	T	C	1.535e^-4	0.75	INTRON CG1632	TF binding site BDTNP1_TFBS_da
2R	8137678	2R_8137678_SNP [dm3] 2R_12250173_SNP [dm6]	T	C	1.538e^-4	0.75	INTERGENIC
3L	412168	3L_412168_SNP [dm3] 3L_412168_SNP [dm6]	G	A	1.539e^-4	0.75	INTERGENIC
3R	24829722	3R_24829722_SNP [dm3] 3R_29004000_SNP [dm6]	T	C	1.540e^-4	0.75	INTRON wat
3L	14811233	3L_14811233_SNP [dm3] 3L_14818133_SNP [dm6]	C	T	1.542e^-4	0.75	INTRON CG17839
2R	17120729	2R_17120729_SNP [dm3] 2R_21233224_SNP [dm6]	A	G	1.545e^-4	0.75	INTRON ASPP
X	14511435	X_14511435_SNP [dm3] X_14617402_SNP [dm6]	A	T	1.549e^-4	0.75	INTRON NetA
3L	9509743	3L_9509743_SNP [dm3] 3L_9516643_SNP [dm6]	C	A	1.555e^-4	0.75	INTRON CG33700
3L	11791042	3L_11791042_SNP [dm3] 3L_11797942_SNP [dm6]	A	G	1.580e^-4	0.75	SYNONYMOUS_CODING Klp68D	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	7273988	3R_7273988_SNP [dm3] 3R_11448266_SNP [dm6]	C	T	1.587e^-4	0.75	UTR_5_PRIME sals INTRON CG17230 & 1 other
2L	2922161	2L_2922161_SNP [dm3] 2L_2922161_SNP [dm6]	T	A	1.587e^-4	0.75	INTRON lilli
3L	14817116	3L_14817116_SNP [dm3] 3L_14824016_SNP [dm6]	A	T	1.590e^-4	0.75	INTRON CG17839
2L	16135147	2L_16135147_SNP [dm3] 2L_16135147_SNP [dm6]	G	A	1.596e^-4	0.75	DOWNSTREAM CR44871 & 1 other INTRON CG34168
3L	14919557	3L_14919557_SNP [dm3] 3L_14926457_SNP [dm6]	T	G	1.596e^-4	0.75	UTR_5_PRIME DCX-EMAP INTRON DCX-EMAP	TF binding site mE1_TFBS_cad
3R	2867864	3R_2867864_SNP [dm3] 3R_7042142_SNP [dm6]	A	C	1.596e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	27128046	3R_27128046_SNP [dm3] 3R_31302324_SNP [dm6]	C	T	1.598e^-4	0.75	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_inv
3R	27189510	3R_27189510_SNP [dm3] 3R_31363788_SNP [dm6]	C	T	1.598e^-4	0.75	INTRON CG34347
3R	27189648	3R_27189648_SNP [dm3] 3R_31363926_SNP [dm6]	C	T	1.598e^-4	0.75	INTRON CG34347
3R	27189682	3R_27189682_SNP [dm3] 3R_31363960_SNP [dm6]	A	T	1.598e^-4	0.75	INTRON CG34347
2L	21879086	2L_21879086_SNP [dm3] 2L_21879086_SNP [dm6]	C	G	1.602e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11648030	2R_11648030_SNP [dm3] 2R_15760525_SNP [dm6]	A	T	1.617e^-4	0.75	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15973654	3R_15973654_SNP [dm3] 3R_20147932_SNP [dm6]	G	C	1.628e^-4	0.75	INTERGENIC
3L	15633361	3L_15633361_SNP [dm3] 3L_15640261_SNP [dm6]	G	A	1.632e^-4	0.75	INTRON comm3	TF binding site mE1_TFBS_inv
3L	16202299	3L_16202299_SNP [dm3] 3L_16209199_SNP [dm6]	C	T	1.636e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_cad
X	13026679	X_13026679_SNP [dm3] X_13132646_SNP [dm6]	T	G	1.636e^-4	0.75	INTRON MFS10 & 1 other
3L	10969436	3L_10969436_SNP [dm3] 3L_10976336_SNP [dm6]	A	T	1.638e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_cad
2L	7025296	2L_7025296_SNP [dm3] 2L_7025296_SNP [dm6]	C	A	1.638e^-4	0.75	NON_SYNONYMOUS_CODING CG31908	TF binding site mE1_TFBS_cad
2R	6669458	2R_6669458_SNP [dm3] 2R_10781953_SNP [dm6]	T	A	1.643e^-4	0.75	UPSTREAM CR44299 INTRON CG33144	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	13739800	2R_13739800_SNP [dm3] 2R_17852295_SNP [dm6]	G	T	1.648e^-4	0.75	UPSTREAM CG30323 INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3965610	3R_3965610_SNP [dm3] 3R_8139888_SNP [dm6]	T	C	1.653e^-4	0.75	UPSTREAM tRNA:N5:84F DOWNSTREAM tRNA:R2:84Fe & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	17952266	X_17952266_SNP [dm3] X_18058233_SNP [dm6]	G	T	1.656e^-4	0.75	INTRON Sh
3L	17633388	3L_17633388_SNP [dm3] 3L_17640288_SNP [dm6]	A	G	1.658e^-4	0.75	INTRON Pep	TF binding site mE1_TFBS_cad
2L	14871517	2L_14871517_INS [dm3] 2L_14871517_INS [dm6]	A	AC	1.658e^-4	0.75	INTRON CG4480
2L	11686657	2L_11686657_SNP [dm3] 2L_11686657_SNP [dm6]	T	C	1.660e^-4	0.75	INTERGENIC
2L	11686631	2L_11686631_DEL [dm3] 2L_11686631_DEL [dm6]	ATTACAGGTAATA...	T	1.664e^-4	0.75	INTERGENIC
3R	25973021	3R_25973021_SNP [dm3] 3R_30147299_SNP [dm6]	T	C	1.671e^-4	0.75	INTRON AdoR
2L	16102044	2L_16102044_DEL [dm3] 2L_16102044_DEL [dm6]	AG	A	1.676e^-4	0.75	INTERGENIC
2R	18819064	2R_18819064_SNP [dm3] 2R_22931541_SNP [dm6]	C	T	1.677e^-4	0.75	SYNONYMOUS_CODING CG42678 UTR_3_PRIME CG42678 DOWNSTREAM CG3788
3R	14854201	3R_14854201_SNP [dm3] 3R_19028479_SNP [dm6]	C	T	1.679e^-4	0.75	NON_SYNONYMOUS_CODING gatA UPSTREAM P5cr DOWNSTREAM NP15.6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19930941	2L_19930941_SNP [dm3] 2L_19930941_SNP [dm6]	G	A	1.679e^-4	0.75	INTRON sick
2R	11849590	2R_11849590_SNP [dm3] 2R_15962085_SNP [dm6]	T	G	1.681e^-4	0.75	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	21866518	2L_21866518_SNP [dm3] 2L_21866518_SNP [dm6]	A	G	1.691e^-4	0.75	UPSTREAM CR44917 & 1 other DOWNSTREAM CR44919 INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18463732	X_18463732_SNP [dm3] X_18569699_SNP [dm6]	A	G	1.706e^-4	0.75	INTRON Bx	TF binding site BDTNP1_TFBS_da
2R	8137710	2R_8137710_SNP [dm3] 2R_12250205_SNP [dm6]	C	A	1.707e^-4	0.75	INTERGENIC
2R	4956241	2R_4956241_SNP [dm3] 2R_9068736_SNP [dm6]	T	G	1.711e^-4	0.75	UPSTREAM ana INTRON ana
2L	8956572	2L_8956572_SNP [dm3] 2L_8956572_SNP [dm6]	A	T	1.717e^-4	0.75	UPSTREAM CG31886 INTRON CG31886	TF binding site BDTNP1_TFBS_twi mE1_TFBS_zfh1
3L	16896018	3L_16896018_SNP [dm3] 3L_16902918_SNP [dm6]	G	A	1.720e^-4	0.75	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo
3R	10436858	3R_10436858_SNP [dm3] 3R_14611136_SNP [dm6]	T	C	1.721e^-4	0.75	INTRON CG14853
2L	6499760	2L_6499760_SNP [dm3] 2L_6499760_SNP [dm6]	G	A	1.723e^-4	0.75	SYNONYMOUS_CODING CG31637	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	2021720	2L_2021720_SNP [dm3] 2L_2021720_SNP [dm6]	T	A	1.739e^-4	0.75	INTRON CG4238
3R	9817339	3R_9817339_SNP [dm3] 3R_13991617_SNP [dm6]	A	T	1.756e^-4	0.75	INTRON rdx
3L	391927	3L_391927_INS [dm3] 3L_391927_INS [dm6]	A	AATTGGAT	1.757e^-4	0.75	DOWNSTREAM CR45378 INTRON trh
2R	13539767	2R_13539767_SNP [dm3] 2R_17652262_SNP [dm6]	C	A	1.759e^-4	0.75	INTRON CCHa1-R
2L	20991750	2L_20991750_SNP [dm3] 2L_20991750_SNP [dm6]	A	C	1.765e^-4	0.75	INTRON CG42238
X	20215435	X_20215435_SNP [dm3] X_20344408_SNP [dm6]	G	A	1.766e^-4	0.75	INTERGENIC
3L	9515093	3L_9515093_SNP [dm3] 3L_9521993_SNP [dm6]	C	G	1.767e^-4	0.75	INTRON CG33700
X	16154167	X_16154167_SNP [dm3] X_16260134_SNP [dm6]	T	A	1.772e^-4	0.75	INTERGENIC
3R	16890386	3R_16890386_SNP [dm3] 3R_21064664_SNP [dm6]	A	G	1.778e^-4	0.75	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2L	16239654	2L_16239654_SNP [dm3] 2L_16239654_SNP [dm6]	T	C	1.788e^-4	0.75	INTRON CG42817
3R	25287731	3R_25287731_DEL [dm3] 3R_29462009_DEL [dm6]	CACACAC	C	1.794e^-4	0.75	UTR_5_PRIME Ptp99A INTRON Ptp99A	TF binding site BDTNP1_TFBS_twi
3L	4647084	3L_4647084_INS [dm3] 3L_4647084_INS [dm6]	T	TC	1.803e^-4	0.75	INTRON axo
X	5661124	X_5661124_SNP [dm3] X_5767091_SNP [dm6]	G	A	1.804e^-4	0.75	SYNONYMOUS_CODING CG3097 INTRON CG42699	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16864005	2R_16864005_SNP [dm3] 2R_20976500_SNP [dm6]	A	T	1.818e^-4	0.75	UPSTREAM CG9344 INTRON CG34115	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	18480610	3R_18480610_SNP [dm3] 3R_22654888_SNP [dm6]	T	C	1.823e^-4	0.75	INTRON CG45058
3L	8590702	3L_8590702_SNP [dm3] 3L_8597602_SNP [dm6]	G	A	1.833e^-4	0.75	NON_SYNONYMOUS_CODING CG43078	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21344893	3R_21344893_SNP [dm3] 3R_25519171_SNP [dm6]	T	A	1.837e^-4	0.75	INTRON msi
3L	3143873	3L_3143873_SNP [dm3] 3L_3143873_SNP [dm6]	T	A	1.843e^-4	0.75	UTR_5_PRIME CG1291 UPSTREAM CG11537	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	21891631	3R_21891631_SNP [dm3] 3R_26065909_SNP [dm6]	T	A	1.854e^-4	0.75	INTERGENIC
2L	19933467	2L_19933467_SNP [dm3] 2L_19933467_SNP [dm6]	T	A	1.856e^-4	0.75	DOWNSTREAM CR45183 INTRON sick
X	1196886	X_1196886_SNP [dm3] X_1302853_SNP [dm6]	T	C	1.857e^-4	0.75	INTRON DAAM	TF binding site mE1_TFBS_chinmo
3R	9817331	3R_9817331_SNP [dm3] 3R_13991609_SNP [dm6]	T	G	1.862e^-4	0.75	INTRON rdx
2R	11575711	2R_11575711_SNP [dm3] 2R_15688206_SNP [dm6]	G	T	1.864e^-4	0.75	NON_SYNONYMOUS_CODING Cep89 SPLICE_SITE_REGION Cep89 DOWNSTREAM Ranbp11	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17267393	2R_17267393_SNP [dm3] 2R_21379888_SNP [dm6]	A	C	1.866e^-4	0.75	UPSTREAM cv-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	9443434	2L_9443434_SNP [dm3] 2L_9443434_SNP [dm6]	C	T	1.876e^-4	0.75	INTRON numb
X	11309234	X_11309234_SNP [dm3] X_11415201_SNP [dm6]	C	T	1.887e^-4	0.75	SYNONYMOUS_CODING Gr10a DOWNSTREAM Or10a	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	24829734	3R_24829734_SNP [dm3] 3R_29004012_SNP [dm6]	A	G	1.888e^-4	0.75	INTRON wat
2L	19941028	2L_19941028_SNP [dm3] 2L_19941028_SNP [dm6]	G	A	1.894e^-4	0.75	INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3131466	2L_3131466_SNP [dm3] 2L_3131466_SNP [dm6]	T	C	1.895e^-4	0.75	INTRON toc
X	16344746	X_16344746_SNP [dm3] X_16450713_SNP [dm6]	A	T	1.898e^-4	0.75	INTRON Rbp2
2L	268796	2L_268796_DEL [dm3] 2L_268796_DEL [dm6]	AA	A	1.901e^-4	0.75	UPSTREAM CG3345 INTRON CG3645
3L	5372382	3L_5372382_SNP [dm3] 3L_5379282_SNP [dm6]	G	A	1.906e^-4	0.75	SYNONYMOUS_CODING Ir64a DOWNSTREAM CR45743
2L	21775574	2L_21775574_INS [dm3] 2L_21775574_INS [dm6]	A	ATC	1.912e^-4	0.75	INTRON CG31612	TF binding site mE1_TFBS_HSA transposable element FlyBase
X	20215352	X_20215352_INS [dm3] X_20344325_INS [dm6]	A	AGTTGGACAGTCGGACA...	1.913e^-4	0.75	INTERGENIC	transposable element FlyBase
3L	9515094	3L_9515094_SNP [dm3] 3L_9521994_SNP [dm6]	T	A	1.913e^-4	0.75	INTRON CG33700
3L	7777439	3L_7777439_SNP [dm3] 3L_7784339_SNP [dm6]	C	T	1.914e^-4	0.75	INTRON CG32369
2L	13325482	2L_13325482_SNP [dm3] 2L_13325482_SNP [dm6]	C	A	1.915e^-4	0.75	INTRON CG43778
3L	6902842	3L_6902842_SNP [dm3] 3L_6909742_SNP [dm6]	C	T	1.915e^-4	0.75	INTERGENIC
2L	14694914	2L_14694914_SNP [dm3] 2L_14694914_SNP [dm6]	C	T	1.919e^-4	0.75	INTERGENIC
3L	8885634	3L_8885634_SNP [dm3] 3L_8892534_SNP [dm6]	A	T	1.920e^-4	0.75	SYNONYMOUS_CODING Mcm7	TF binding site BDTNP1_TFBS_twi
2L	19890124	2L_19890124_SNP [dm3] 2L_19890124_SNP [dm6]	T	G	1.930e^-4	0.75	DOWNSTREAM CG10481 INTRON sick
2L	5160275	2L_5160275_SNP [dm3] 2L_5160275_SNP [dm6]	T	G	1.939e^-4	0.75	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4512888	2L_4512888_SNP [dm3] 2L_4512888_SNP [dm6]	G	A	1.942e^-4	0.75	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13570405	3R_13570405_SNP [dm3] 3R_17744683_SNP [dm6]	A	C	1.947e^-4	0.75	INTRON TyrRII
3L	1733205	3L_1733205_SNP [dm3] 3L_1733205_SNP [dm6]	C	T	1.950e^-4	0.75	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	5446560	3R_5446560_DEL [dm3] 3R_9620838_DEL [dm6]	AAAACAGTGG	A	1.955e^-4	0.75	INTRON CG8312
3L	9688709	3L_9688709_SNP [dm3] 3L_9695609_SNP [dm6]	C	G	1.968e^-4	0.75	UPSTREAM CG6767 INTRON CG6767 EXON CR45121	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1731275	3L_1731275_SNP [dm3] 3L_1731275_SNP [dm6]	A	G	1.971e^-4	0.75	UTR_3_PRIME Oseg4 UPSTREAM drpr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5980518	2R_5980518_SNP [dm3] 2R_10093013_SNP [dm6]	A	G	1.973e^-4	0.75	INTRON CG2269
3L	411206	3L_411206_INS [dm3] 3L_411206_INS [dm6]	C	CA	1.973e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8740651	2L_8740651_SNP [dm3] 2L_8740651_SNP [dm6]	T	A	1.974e^-4	0.75	UTR_5_PRIME raw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2L	3291545	2L_3291545_SNP [dm3] 2L_3291545_SNP [dm6]	G	T	1.982e^-4	0.75	SYNONYMOUS_CODING CG9664 UTR_3_PRIME CG9664	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	19841857	2L_19841857_SNP [dm3] 2L_19841857_SNP [dm6]	T	C	1.990e^-4	0.75	INTRON sick
3L	9513593	3L_9513593_SNP [dm3] 3L_9520493_SNP [dm6]	G	T	1.993e^-4	0.75	INTRON CG33700
2L	9104792	2L_9104792_SNP [dm3] 2L_9104792_SNP [dm6]	A	G	1.997e^-4	0.75	INTERGENIC
2L	696649	2L_696649_SNP [dm3] 2L_696649_SNP [dm6]	T	A	1.998e^-4	0.75	INTRON ds	TF binding site mE1_TFBS_Trl
2L	1198461	2L_1198461_SNP [dm3] 2L_1198461_SNP [dm6]	A	T	1.998e^-4	0.75	UPSTREAM CG43348 DOWNSTREAM CG5139 INTERGENIC
2L	1198472	2L_1198472_SNP [dm3] 2L_1198472_SNP [dm6]	G	A	1.998e^-4	0.75	UTR_3_PRIME CG5139 UPSTREAM CG43348
3L	14835301	3L_14835301_SNP [dm3] 3L_14842201_SNP [dm6]	T	A	1.999e^-4	0.75	INTRON CG17839
3L	9686786	3L_9686786_SNP [dm3] 3L_9693686_SNP [dm6]	C	T	2.003e^-4	0.75	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	14368783	3R_14368783_SNP [dm3] 3R_18543061_SNP [dm6]	A	G	2.008e^-4	0.75	INTRON fru
X	5120460	X_5120460_SNP [dm3] X_5226427_SNP [dm6]	A	G	2.018e^-4	0.75	INTRON CG15465 & 1 other
X	17503877	X_17503877_SNP [dm3] X_17609844_SNP [dm6]	G	T	2.019e^-4	0.75	INTERGENIC
3R	6299585	3R_6299585_SNP [dm3] 3R_10473863_SNP [dm6]	G	T	2.020e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	15483291	3L_15483291_SNP [dm3] 3L_15490191_SNP [dm6]	A	T	2.024e^-4	0.75	INTERGENIC
2R	16794266	2R_16794266_SNP [dm3] 2R_20906761_SNP [dm6]	C	G	2.029e^-4	0.75	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
2R	16794363	2R_16794363_SNP [dm3] 2R_20906858_SNP [dm6]	T	A	2.029e^-4	0.75	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
2R	16794370	2R_16794370_SNP [dm3] 2R_20906865_SNP [dm6]	C	T	2.029e^-4	0.75	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
2R	16794579	2R_16794579_SNP [dm3] 2R_20907074_SNP [dm6]	T	A	2.029e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	23141751	3R_23141751_SNP [dm3] 3R_27316029_SNP [dm6]	C	A	2.031e^-4	0.75	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	10343861	2R_10343861_SNP [dm3] 2R_14456356_SNP [dm6]	T	G	2.043e^-4	0.75	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19880293	2L_19880293_SNP [dm3] 2L_19880293_SNP [dm6]	A	T	2.044e^-4	0.75	INTRON sick
2L	18813039	2L_18813039_SNP [dm3] 2L_18813039_SNP [dm6]	T	A	2.050e^-4	0.75	UTR_5_PRIME CG42305 & 1 other
3R	25779128	3R_25779128_SNP [dm3] 3R_29953406_SNP [dm6]	G	A	2.054e^-4	0.75	SYNONYMOUS_CODING TkR99D
3L	11168307	3L_11168307_SNP [dm3] 3L_11175207_SNP [dm6]	T	A	2.059e^-4	0.75	INTRON CG14142
3L	18641597	3L_18641597_DEL [dm3] 3L_18648497_DEL [dm6]	AACACA	GGGTT	2.066e^-4	0.75	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20128377	2L_20128377_SNP [dm3] 2L_20128377_SNP [dm6]	C	T	2.067e^-4	0.75	INTERGENIC
2R	14678570	2R_14678570_SNP [dm3] 2R_18791065_SNP [dm6]	C	T	2.069e^-4	0.75	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2645491	3L_2645491_SNP [dm3] 3L_2645491_SNP [dm6]	A	T	2.073e^-4	0.75	INTRON CG1143
2L	16135128	2L_16135128_SNP [dm3] 2L_16135128_SNP [dm6]	T	A	2.074e^-4	0.75	DOWNSTREAM CR44871 & 1 other INTRON CG34168
3L	1727047	3L_1727047_SNP [dm3] 3L_1727047_SNP [dm6]	G	A	2.082e^-4	0.75	INTRON drpr
3L	11911451	3L_11911451_SNP [dm3] 3L_11918351_SNP [dm6]	T	A	2.083e^-4	0.75	INTRON CG44837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	19079203	2L_19079203_SNP [dm3] 2L_19079203_SNP [dm6]	C	T	2.084e^-4	0.75	UPSTREAM CG10700 DOWNSTREAM Lim3 INTERGENIC
3L	10693458	3L_10693458_SNP [dm3] 3L_10700358_SNP [dm6]	A	C	2.092e^-4	0.75	INTERGENIC
2L	8763784	2L_8763784_SNP [dm3] 2L_8763784_SNP [dm6]	T	G	2.112e^-4	0.75	INTERGENIC
X	13018717	X_13018717_SNP [dm3] X_13124684_SNP [dm6]	C	T	2.119e^-4	0.75	INTRON CG32638
3R	5145048	3R_5145048_SNP [dm3] 3R_9319326_SNP [dm6]	G	A	2.128e^-4	0.75	INTRON CG8861
3R	25571021	3R_25571021_SNP [dm3] 3R_29745299_SNP [dm6]	G	A	2.131e^-4	0.75	UPSTREAM IntS11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	606452	2L_606452_SNP [dm3] 2L_606452_SNP [dm6]	C	T	2.132e^-4	0.75	DOWNSTREAM CR43648 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25570650	3R_25570650_SNP [dm3] 3R_29744928_SNP [dm6]	C	T	2.143e^-4	0.75	SYNONYMOUS_CODING CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14351051	3R_14351051_SNP [dm3] 3R_18525329_SNP [dm6]	G	A	2.145e^-4	0.75	INTRON fru	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	19817600	2L_19817600_SNP [dm3] 2L_19817600_SNP [dm6]	A	C	2.145e^-4	0.75	INTRON sick	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	13924061	3L_13924061_SNP [dm3] 3L_13930961_SNP [dm6]	C	T	2.155e^-4	0.75	SYNONYMOUS_CODING Gl	TF binding site mE1_TFBS_cad
2L	19930981	2L_19930981_SNP [dm3] 2L_19930981_SNP [dm6]	A	G	2.155e^-4	0.75	INTRON sick
3R	22160103	3R_22160103_SNP [dm3] 3R_26334381_SNP [dm6]	A	T	2.155e^-4	0.75	INTRON CG33970
3L	9555349	3L_9555349_SNP [dm3] 3L_9562249_SNP [dm6]	A	G	2.160e^-4	0.75	INTRON CG42673
3L	15483209	3L_15483209_SNP [dm3] 3L_15490109_SNP [dm6]	A	G	2.169e^-4	0.75	INTERGENIC
2L	19804790	2L_19804790_SNP [dm3] 2L_19804790_SNP [dm6]	C	G	2.171e^-4	0.75	INTRON sick
2L	21906167	2L_21906167_SNP [dm3] 2L_21906167_SNP [dm6]	A	T	2.173e^-4	0.75	UPSTREAM CG1428 INTERGENIC
3L	14389469	3L_14389469_SNP [dm3] 3L_14396369_SNP [dm6]	C	G	2.182e^-4	0.75	INTERGENIC
X	18454882	X_18454882_SNP [dm3] X_18560849_SNP [dm6]	G	A	2.182e^-4	0.75	INTRON Bx
3L	16202307	3L_16202307_SNP [dm3] 3L_16209207_SNP [dm6]	T	C	2.187e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_cad
2R	15874982	2R_15874982_SNP [dm3] 2R_19987477_SNP [dm6]	C	T	2.194e^-4	0.75	INTERGENIC
2L	6743782	2L_6743782_INS [dm3] 2L_6743782_INS [dm6]	A	ACTA	2.195e^-4	0.75	DOWNSTREAM CG31910 INTRON CG11221
3L	14925605	3L_14925605_SNP [dm3] 3L_14932505_SNP [dm6]	T	G	2.195e^-4	0.75	INTRON DCX-EMAP
3R	24132555	3R_24132555_SNP [dm3] 3R_28306833_SNP [dm6]	A	G	2.199e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	4533938	3L_4533938_SNP [dm3] 3L_4533938_SNP [dm6]	A	C	2.202e^-4	0.75	INTRON CG11353
3L	14410434	3L_14410434_SNP [dm3] 3L_14417334_SNP [dm6]	G	A	2.204e^-4	0.75	INTRON bbg
3L	14385314	3L_14385314_DEL [dm3] 3L_14392214_DEL [dm6]	ATAAAAA	A	2.215e^-4	0.75	INTERGENIC
X	9849318	X_9849318_DEL [dm3] X_9955285_DEL [dm6]	TCGACT	T	2.215e^-4	0.75	INTERGENIC
3R	20478904	3R_20478904_SNP [dm3] 3R_24653182_SNP [dm6]	T	C	2.216e^-4	0.75	SYNONYMOUS_CODING ash2 DOWNSTREAM CG31125
2R	15697740	2R_15697740_SNP [dm3] 2R_19810235_SNP [dm6]	T	G	2.216e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	19821796	2L_19821796_SNP [dm3] 2L_19821796_SNP [dm6]	C	A	2.225e^-4	0.75	INTRON sick
2L	5862491	2L_5862491_SNP [dm3] 2L_5862491_SNP [dm6]	C	T	2.228e^-4	0.75	INTRON rau
3L	20888236	3L_20888236_SNP [dm3] 3L_20895136_SNP [dm6]	A	G	2.232e^-4	0.75	INTERGENIC
3L	11632796	3L_11632796_SNP [dm3] 3L_11639696_SNP [dm6]	G	T	2.234e^-4	0.75	INTRON CG32091
3L	1740510	3L_1740510_SNP [dm3] 3L_1740510_SNP [dm6]	C	A	2.240e^-4	0.75	INTRON Gk
2R	19553902	2R_19553902_SNP [dm3] 2R_23666379_SNP [dm6]	G	C	2.241e^-4	0.75	UPSTREAM Pde8 INTRON Pde8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	15090500	2L_15090500_SNP [dm3] 2L_15090500_SNP [dm6]	T	A	2.242e^-4	0.75	INTRON CG15270
3R	27187729	3R_27187729_SNP [dm3] 3R_31362007_SNP [dm6]	A	T	2.249e^-4	0.75	SYNONYMOUS_CODING CG34347	TF binding site mE1_TFBS_chinmo
X	16344120	X_16344120_SNP [dm3] X_16450087_SNP [dm6]	G	A	2.250e^-4	0.75	SYNONYMOUS_CODING Rbp2	TF binding site BDTNP1_TFBS_dl
3R	24413609	3R_24413609_SNP [dm3] 3R_28587887_SNP [dm6]	C	T	2.255e^-4	0.75	EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10694223	3L_10694223_SNP [dm3] 3L_10701123_SNP [dm6]	C	A	2.255e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14817336	3L_14817336_SNP [dm3] 3L_14824236_SNP [dm6]	G	A	2.266e^-4	0.75	INTRON CG17839
3L	14835275	3L_14835275_INS [dm3] 3L_14842175_INS [dm6]	T	TTGCAA	2.267e^-4	0.75	INTRON CG17839
2R	15895805	2R_15895805_SNP [dm3] 2R_20008300_SNP [dm6]	T	C	2.269e^-4	0.75	DOWNSTREAM CR44628 INTERGENIC
3L	8695957	3L_8695957_DEL [dm3] 3L_8702857_DEL [dm6]	TAT	T	2.271e^-4	0.75	INTERGENIC
3R	20478993	3R_20478993_SNP [dm3] 3R_24653271_SNP [dm6]	G	T	2.271e^-4	0.75	UTR_3_PRIME ash2 DOWNSTREAM CG31125	TF binding site mE1_TFBS_chinmo
3L	7467600	3L_7467600_SNP [dm3] 3L_7474500_SNP [dm6]	T	C	2.272e^-4	0.75	INTERGENIC
3L	2646789	3L_2646789_SNP [dm3] 3L_2646789_SNP [dm6]	T	G	2.287e^-4	0.75	UTR_3_PRIME CG1143 DOWNSTREAM CG1143
2L	18858630	2L_18858630_DEL [dm3] 2L_18858630_DEL [dm6]	AATCGGCGACCAT...	A	2.300e^-4	0.75	UPSTREAM CG10602 DOWNSTREAM tup INTRON CG10602 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
3L	1101004	3L_1101004_SNP [dm3] 3L_1101004_SNP [dm6]	C	T	2.300e^-4	0.75	UTR_5_PRIME bab1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
X	9844067	X_9844067_SNP [dm3] X_9950034_SNP [dm6]	A	G	2.304e^-4	0.75	INTERGENIC
3L	2646310	3L_2646310_SNP [dm3] 3L_2646310_SNP [dm6]	T	C	2.307e^-4	0.75	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	2952106	3R_2952106_SNP [dm3] 3R_7126384_SNP [dm6]	G	A	2.308e^-4	0.75	UTR_3_PRIME CG10098 & 1 other
3R	25570881	3R_25570881_SNP [dm3] 3R_29745159_SNP [dm6]	A	T	2.323e^-4	0.75	UPSTREAM IntS11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21427786	3R_21427786_SNP [dm3] 3R_25602064_SNP [dm6]	T	A	2.328e^-4	0.75	UTR_3_PRIME msi DOWNSTREAM msi INTRON ymp
2R	4952874	2R_4952874_SNP [dm3] 2R_9065369_SNP [dm6]	G	A	2.329e^-4	0.75	INTRON ana	regulatory region REDfly_CRMs
3R	14618452	3R_14618452_SNP [dm3] 3R_18792730_SNP [dm6]	G	A	2.331e^-4	0.75	UPSTREAM CG7720 INTRON CG7720
2L	1239660	2L_1239660_SNP [dm3] 2L_1239660_SNP [dm6]	G	A	2.336e^-4	0.75	UPSTREAM CG5397 INTERGENIC
3L	7072423	3L_7072423_SNP [dm3] 3L_7079323_SNP [dm6]	C	A	2.339e^-4	0.75	INTERGENIC
2R	16794328	2R_16794328_SNP [dm3] 2R_20906823_SNP [dm6]	G	A	2.340e^-4	0.75	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
2R	16794339	2R_16794339_SNP [dm3] 2R_20906834_SNP [dm6]	T	A	2.340e^-4	0.75	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
3L	15693061	3L_15693061_SNP [dm3] 3L_15699961_SNP [dm6]	C	T	2.344e^-4	0.75	UPSTREAM comm2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9353049	3L_9353049_SNP [dm3] 3L_9359949_SNP [dm6]	C	A	2.345e^-4	0.75	UTR_3_PRIME CG32039 UPSTREAM CG34455 DOWNSTREAM CG32039	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
3R	24357321	3R_24357321_SNP [dm3] 3R_28531599_SNP [dm6]	T	A	2.348e^-4	0.75	INTRON Ppn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
X	13653673	X_13653673_SNP [dm3] X_13759640_SNP [dm6]	C	T	2.356e^-4	0.75	SYNONYMOUS_CODING Yp3	TF binding site mE1_TFBS_sens
2L	20991674	2L_20991674_SNP [dm3] 2L_20991674_SNP [dm6]	C	A	2.361e^-4	0.75	INTRON CG42238
2R	15016163	2R_15016163_SNP [dm3] 2R_19128658_SNP [dm6]	T	A	2.371e^-4	0.75	UPSTREAM botv INTRON CG15117
X	21458725	X_21458725_SNP [dm3] X_21587698_SNP [dm6]	T	C	2.373e^-4	0.75	INTERGENIC
3R	2867868	3R_2867868_SNP [dm3] 3R_7042146_SNP [dm6]	G	A	2.375e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6839496	3L_6839496_SNP [dm3] 3L_6846396_SNP [dm6]	T	G	2.376e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	14585253	2R_14585253_SNP [dm3] 2R_18697748_SNP [dm6]	G	C	2.378e^-4	0.75	DOWNSTREAM CG15071 INTRON Sik3
3L	7105602	3L_7105602_SNP [dm3] 3L_7112502_SNP [dm6]	A	T	2.380e^-4	0.75	INTRON form3
3L	14974486	3L_14974486_SNP [dm3] 3L_14981386_SNP [dm6]	A	G	2.385e^-4	0.75	SYNONYMOUS_CODING CG3349
2R	14077923	2R_14077923_SNP [dm3] 2R_18190418_SNP [dm6]	T	C	2.386e^-4	0.75	DOWNSTREAM CG14500 INTRON CG33958
2R	15016160	2R_15016160_SNP [dm3] 2R_19128655_SNP [dm6]	G	A	2.389e^-4	0.75	UPSTREAM botv INTRON CG15117
2R	19504761	2R_19504761_SNP [dm3] 2R_23617238_SNP [dm6]	T	C	2.399e^-4	0.75	UPSTREAM CG17664 INTERGENIC	TF binding site mE1_TFBS_sens
2R	8133288	2R_8133288_SNP [dm3] 2R_12245783_SNP [dm6]	C	G	2.409e^-4	0.75	DOWNSTREAM CR44315 INTERGENIC
2L	9463941	2L_9463941_SNP [dm3] 2L_9463941_SNP [dm6]	T	C	2.422e^-4	0.75	UTR_3_PRIME numb DOWNSTREAM numb
3L	22883797	3L_22883797_SNP [dm3] 3L_22890697_SNP [dm6]	A	G	2.423e^-4	0.75	INTRON slif	transposable element FlyBase
3L	8582618	3L_8582618_SNP [dm3] 3L_8589518_SNP [dm6]	T	C	2.424e^-4	0.75	UPSTREAM CG43078 INTRON CG43078
X	7680449	X_7680449_SNP [dm3] X_7786416_SNP [dm6]	A	T	2.439e^-4	0.75	INTERGENIC
2L	12527584	2L_12527584_SNP [dm3] 2L_12527584_SNP [dm6]	A	T	2.439e^-4	0.75	INTRON bun	TF binding site BDTNP1_TFBS_dl
2R	8137696	2R_8137696_SNP [dm3] 2R_12250191_SNP [dm6]	A	T	2.441e^-4	0.75	INTERGENIC
X	4094790	X_4094790_SNP [dm3] X_4200757_SNP [dm6]	T	C	2.449e^-4	0.75	INTRON Fas2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8448070	2L_8448070_SNP [dm3] 2L_8448070_SNP [dm6]	C	T	2.450e^-4	0.75	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27189442	3R_27189442_DEL [dm3] 3R_31363720_DEL [dm6]	TGAAAA	T	2.452e^-4	0.75	INTRON CG34347
3L	9510193	3L_9510193_SNP [dm3] 3L_9517093_SNP [dm6]	C	A	2.455e^-4	0.75	INTRON CG33700
2L	10482563	2L_10482563_SNP [dm3] 2L_10482563_SNP [dm6]	C	A	2.457e^-4	0.75	NON_SYNONYMOUS_CODING RluA-2 UTR_3_PRIME RluA-2 UPSTREAM Grip75	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	19890126	2L_19890126_SNP [dm3] 2L_19890126_SNP [dm6]	T	G	2.458e^-4	0.75	DOWNSTREAM CG10481 INTRON sick
2R	13917272	2R_13917272_SNP [dm3] 2R_18029767_SNP [dm6]	C	T	2.465e^-4	0.75	INTERGENIC
3L	5705590	3L_5705590_SNP [dm3] 3L_5712490_SNP [dm6]	A	G	2.466e^-4	0.75	UPSTREAM CG44521 INTRON sif	TF binding site mE1_TFBS_chinmo
2R	15016146	2R_15016146_SNP [dm3] 2R_19128641_SNP [dm6]	T	A	2.466e^-4	0.75	UPSTREAM botv INTRON CG15117
2R	14074046	2R_14074046_SNP [dm3] 2R_18186541_SNP [dm6]	T	C	2.469e^-4	0.75	SYNONYMOUS_CODING CG33958
3L	2981701	3L_2981701_SNP [dm3] 3L_2981701_SNP [dm6]	A	G	2.470e^-4	0.75	SYNONYMOUS_CODING CG2107	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	21458777	X_21458777_SNP [dm3] X_21587750_SNP [dm6]	C	T	2.475e^-4	0.75	INTERGENIC
3L	16495547	3L_16495547_SNP [dm3] 3L_16502447_SNP [dm6]	A	G	2.482e^-4	0.75	SYNONYMOUS_CODING CG43373 INTRON CG43373	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13310093	3L_13310093_INS [dm3] 3L_13316993_INS [dm6]	T	TAAGTCTTTTA...	2.489e^-4	0.75	INTERGENIC
X	19011994	X_19011994_SNP [dm3] X_19117961_SNP [dm6]	C	T	2.491e^-4	0.75	INTERGENIC
3R	25570904	3R_25570904_SNP [dm3] 3R_29745182_SNP [dm6]	G	C	2.498e^-4	0.75	UPSTREAM IntS11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21341392	3R_21341392_SNP [dm3] 3R_25515670_SNP [dm6]	T	A	2.507e^-4	0.75	UPSTREAM msi INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	19901820	2L_19901820_SNP [dm3] 2L_19901820_SNP [dm6]	G	T	2.507e^-4	0.75	INTRON sick
X	5115825	X_5115825_SNP [dm3] X_5221792_SNP [dm6]	A	G	2.513e^-4	0.75	INTRON CG15465 & 1 other
3L	14816333	3L_14816333_SNP [dm3] 3L_14823233_SNP [dm6]	G	A	2.514e^-4	0.75	INTRON CG17839
3R	24132562	3R_24132562_SNP [dm3] 3R_28306840_SNP [dm6]	A	T	2.518e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	5489798	X_5489798_SNP [dm3] X_5595765_SNP [dm6]	A	T	2.525e^-4	0.75	INTRON Vsx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	20479009	3R_20479009_SNP [dm3] 3R_24653287_SNP [dm6]	A	T	2.529e^-4	0.75	UTR_3_PRIME ash2 DOWNSTREAM CG31125	TF binding site mE1_TFBS_chinmo
3L	15610573	3L_15610573_SNP [dm3] 3L_15617473_SNP [dm6]	G	A	2.532e^-4	0.75	INTRON comm3
3L	15610581	3L_15610581_DEL [dm3] 3L_15617481_DEL [dm6]	GGCC	TT	2.532e^-4	0.75	INTRON comm3
3L	15610600	3L_15610600_SNP [dm3] 3L_15617500_SNP [dm6]	A	C	2.532e^-4	0.75	INTRON comm3
2R	12267152	2R_12267152_SNP [dm3] 2R_16379647_SNP [dm6]	T	A	2.540e^-4	0.75	UPSTREAM CG43187 EXON CR45316 & 1 other
X	13998264	X_13998264_SNP [dm3] X_14104231_SNP [dm6]	C	G	2.544e^-4	0.75	UPSTREAM tRNA:S4:12Ee & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19970109	2L_19970109_SNP [dm3] 2L_19970109_SNP [dm6]	C	T	2.545e^-4	0.75	SYNONYMOUS_CODING CG43861 UTR_3_PRIME CG43861	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22778961	3R_22778961_SNP [dm3] 3R_26953239_SNP [dm6]	G	A	2.545e^-4	0.75	UTR_5_PRIME CG6330 INTRON CG6330	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	6993925	X_6993925_SNP [dm3] X_7099892_SNP [dm6]	C	A	2.549e^-4	0.75	SYNONYMOUS_CODING CG4615	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8582894	3L_8582894_SNP [dm3] 3L_8589794_SNP [dm6]	G	C	2.554e^-4	0.75	UPSTREAM CG43078 INTRON CG43078
3L	15614495	3L_15614495_SNP [dm3] 3L_15621395_SNP [dm6]	C	A	2.554e^-4	0.75	NON_SYNONYMOUS_CODING CG7372 INTRON comm3	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	6508912	2L_6508912_SNP [dm3] 2L_6508912_SNP [dm6]	T	A	2.555e^-4	0.75	UPSTREAM CR44775 INTRON CG31637	TF binding site BDTNP1_TFBS_hb
3R	6105638	3R_6105638_DEL [dm3] 3R_10279916_DEL [dm6]	ATGACTCCA	A	2.555e^-4	0.75	INTRON CG43143
3L	4737951	3L_4737951_SNP [dm3] 3L_4737951_SNP [dm6]	C	A	2.564e^-4	0.75	INTRON RhoGEF64C
X	2310890	X_2310890_SNP [dm3] X_2416857_SNP [dm6]	C	G	2.567e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9463956	2L_9463956_SNP [dm3] 2L_9463956_SNP [dm6]	C	A	2.570e^-4	0.75	UTR_3_PRIME numb DOWNSTREAM numb
2L	939164	2L_939164_SNP [dm3] 2L_939164_SNP [dm6]	T	C	2.576e^-4	0.75	INTRON CG4341	TF binding site mE1_TFBS_chinmo
3R	15077609	3R_15077609_SNP [dm3] 3R_19251887_SNP [dm6]	C	A	2.577e^-4	0.75	INTERGENIC
3L	4737909	3L_4737909_SNP [dm3] 3L_4737909_SNP [dm6]	G	A	2.580e^-4	0.75	INTRON RhoGEF64C
3L	2687377	3L_2687377_SNP [dm3] 3L_2687377_SNP [dm6]	C	A	2.584e^-4	0.75	INTRON Fife
2L	16135119	2L_16135119_SNP [dm3] 2L_16135119_SNP [dm6]	A	G	2.586e^-4	0.75	DOWNSTREAM CR44871 & 1 other INTRON CG34168
3R	24412419	3R_24412419_SNP [dm3] 3R_28586697_SNP [dm6]	G	A	2.586e^-4	0.75	EXON MRE23	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
3R	6105532	3R_6105532_SNP [dm3] 3R_10279810_SNP [dm6]	C	T	2.590e^-4	0.75	INTRON CG43143
2L	5454299	2L_5454299_SNP [dm3] 2L_5454299_SNP [dm6]	T	G	2.591e^-4	0.75	INTERGENIC
2R	19533244	2R_19533244_SNP [dm3] 2R_23645721_SNP [dm6]	G	A	2.598e^-4	0.75	UPSTREAM retn INTRON retn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	8132873	2R_8132873_SNP [dm3] 2R_12245368_SNP [dm6]	C	A	2.599e^-4	0.75	UPSTREAM CG43244 INTERGENIC
2R	15173056	2R_15173056_DEL [dm3] 2R_19285551_DEL [dm6]	AGTCTAACAAAATTAGTA...	A	2.600e^-4	0.75	UTR_3_PRIME CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad
3L	7257568	3L_7257568_SNP [dm3] 3L_7264468_SNP [dm6]	G	A	2.603e^-4	0.75	UPSTREAM CG14830 INTERGENIC
3L	837843	3L_837843_SNP [dm3] 3L_837843_SNP [dm6]	C	T	2.605e^-4	0.75	UPSTREAM CG13887 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	9105472	2L_9105472_SNP [dm3] 2L_9105472_SNP [dm6]	A	T	2.612e^-4	0.75	INTERGENIC
2R	16303177	2R_16303177_SNP [dm3] 2R_20415672_SNP [dm6]	C	T	2.612e^-4	0.75	INTERGENIC
3R	18780293	3R_18780293_SNP [dm3] 3R_22954571_SNP [dm6]	G	C	2.613e^-4	0.75	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	8763742	2L_8763742_SNP [dm3] 2L_8763742_SNP [dm6]	T	A	2.615e^-4	0.75	INTERGENIC
2R	12510094	2R_12510094_SNP [dm3] 2R_16622589_SNP [dm6]	C	T	2.621e^-4	0.75	INTRON CG5065	TF binding site mE1_TFBS_cad
3L	11617856	3L_11617856_SNP [dm3] 3L_11624756_SNP [dm6]	T	G	2.624e^-4	0.75	SYNONYMOUS_CODING CG6083 UPSTREAM CG6084
3R	21582163	3R_21582163_SNP [dm3] 3R_25756441_SNP [dm6]	A	G	2.626e^-4	0.75	INTRON LpR1
X	19012009	X_19012009_SNP [dm3] X_19117976_SNP [dm6]	A	G	2.630e^-4	0.75	INTERGENIC
3L	11922610	3L_11922610_SNP [dm3] 3L_11929510_SNP [dm6]	T	C	2.632e^-4	0.75	INTRON CG44837 & 1 other
2L	9052774	2L_9052774_SNP [dm3] 2L_9052774_SNP [dm6]	G	T	2.633e^-4	0.75	UTR_3_PRIME CG31708
X	5742546	X_5742546_SNP [dm3] X_5848513_SNP [dm6]	T	C	2.633e^-4	0.75	INTERGENIC
3L	3872313	3L_3872313_SNP [dm3] 3L_3872313_SNP [dm6]	A	G	2.633e^-4	0.75	INTERGENIC
3R	25617624	3R_25617624_SNP [dm3] 3R_29791902_SNP [dm6]	C	T	2.634e^-4	0.75	SYNONYMOUS_CODING kay	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	7257545	3L_7257545_SNP [dm3] 3L_7264445_SNP [dm6]	T	A	2.635e^-4	0.75	UPSTREAM CG14830 INTERGENIC
2L	19837577	2L_19837577_SNP [dm3] 2L_19837577_SNP [dm6]	G	A	2.638e^-4	0.75	INTRON sick	TF binding site mE1_TFBS_cad
3L	14817946	3L_14817946_SNP [dm3] 3L_14824846_SNP [dm6]	A	G	2.644e^-4	0.751	INTRON CG17839
3R	3305418	3R_3305418_SNP [dm3] 3R_7479696_SNP [dm6]	G	A	2.654e^-4	0.752	INTERGENIC
2L	378373	2L_378373_SNP [dm3] 2L_378373_SNP [dm6]	A	T	2.656e^-4	0.752	UTR_5_PRIME al	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	20187404	3L_20187404_SNP [dm3] 3L_20194304_SNP [dm6]	A	G	2.664e^-4	0.752	INTRON CG42674
3R	5137887	3R_5137887_SNP [dm3] 3R_9312165_SNP [dm6]	A	G	2.673e^-4	0.752	INTRON CG8861
2R	16425872	2R_16425872_SNP [dm3] 2R_20538367_SNP [dm6]	T	C	2.673e^-4	0.752	DOWNSTREAM CG13427 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
2R	11327910	2R_11327910_SNP [dm3] 2R_15440405_SNP [dm6]	T	C	2.679e^-4	0.752	INTRON CG43729
3L	18641613	3L_18641613_SNP [dm3] 3L_18648513_SNP [dm6]	A	T	2.690e^-4	0.752	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21341445	3R_21341445_SNP [dm3] 3R_25515723_SNP [dm6]	T	C	2.695e^-4	0.752	UPSTREAM msi INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	19830668	2L_19830668_SNP [dm3] 2L_19830668_SNP [dm6]	C	G	2.696e^-4	0.752	INTRON sick
X	7622623	X_7622623_SNP [dm3] X_7728590_SNP [dm6]	G	A	2.708e^-4	0.752	UPSTREAM CG12155 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	17945999	X_17945999_SNP [dm3] X_18051966_SNP [dm6]	T	C	2.713e^-4	0.752	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9716369	3L_9716369_SNP [dm3] 3L_9723269_SNP [dm6]	T	C	2.715e^-4	0.752	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	2957893	2R_2957893_SNP [dm3] 2R_7070388_SNP [dm6]	A	C	2.718e^-4	0.752	UPSTREAM tRNA:CR30298 DOWNSTREAM CG12831 & 2 others INTERGENIC
3L	7257559	3L_7257559_SNP [dm3] 3L_7264459_SNP [dm6]	G	A	2.733e^-4	0.752	UPSTREAM CG14830 INTERGENIC
3R	24427748	3R_24427748_SNP [dm3] 3R_28602026_SNP [dm6]	A	T	2.734e^-4	0.752	UPSTREAM snoRNA:Psi28S-3405c & 2 others DOWNSTREAM snoRNA:Psi28S-3405a & 2 others INTRON Hrb98DE
3L	7473829	3L_7473829_SNP [dm3] 3L_7480729_SNP [dm6]	C	G	2.736e^-4	0.752	INTERGENIC	TF binding site mE1_TFBS_inv
2R	17590899	2R_17590899_SNP [dm3] 2R_21703394_SNP [dm6]	G	A	2.737e^-4	0.752	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
2L	12527578	2L_12527578_SNP [dm3] 2L_12527578_SNP [dm6]	C	A	2.737e^-4	0.752	INTRON bun	TF binding site BDTNP1_TFBS_dl
3L	15606962	3L_15606962_SNP [dm3] 3L_15613862_SNP [dm6]	G	T	2.739e^-4	0.752	SYNONYMOUS_CODING comm3
3L	6839481	3L_6839481_SNP [dm3] 3L_6846381_SNP [dm6]	A	C	2.740e^-4	0.752	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	4545922	3L_4545922_SNP [dm3] 3L_4545922_SNP [dm6]	G	A	2.744e^-4	0.752	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25570756	3R_25570756_SNP [dm3] 3R_29745034_SNP [dm6]	A	C	2.745e^-4	0.752	START_GAINED CG7609 UTR_5_PRIME CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2645067	3L_2645067_SNP [dm3] 3L_2645067_SNP [dm6]	C	T	2.748e^-4	0.752	UPSTREAM CG1143 INTERGENIC
3R	7349516	3R_7349516_SNP [dm3] 3R_11523794_SNP [dm6]	C	G	2.752e^-4	0.752	INTERGENIC
3L	4741046	3L_4741046_SNP [dm3] 3L_4741046_SNP [dm6]	G	A	2.760e^-4	0.752	INTRON RhoGEF64C
2L	588419	2L_588419_SNP [dm3] 2L_588419_SNP [dm6]	T	A	2.760e^-4	0.752	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
2L	2519691	2L_2519691_SNP [dm3] 2L_2519691_SNP [dm6]	T	C	2.761e^-4	0.752	INTERGENIC
2L	19930978	2L_19930978_SNP [dm3] 2L_19930978_SNP [dm6]	G	T	2.765e^-4	0.752	INTRON sick
2L	21785498	2L_21785498_SNP [dm3] 2L_21785498_SNP [dm6]	A	T	2.767e^-4	0.752	INTRON CG31612
3L	3966428	3L_3966428_SNP [dm3] 3L_3966428_SNP [dm6]	C	A	2.769e^-4	0.752	INTERGENIC
3L	10694245	3L_10694245_SNP [dm3] 3L_10701145_SNP [dm6]	G	A	2.795e^-4	0.754	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	6253276	3R_6253276_SNP [dm3] 3R_10427554_SNP [dm6]	G	A	2.802e^-4	0.754	INTERGENIC
2R	14075701	2R_14075701_SNP [dm3] 2R_18188196_SNP [dm6]	G	C	2.811e^-4	0.754	NON_SYNONYMOUS_CODING CG14499 UPSTREAM CG14500 INTRON CG33958	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	20262202	X_20262202_SNP [dm3] X_20391175_SNP [dm6]	C	A	2.811e^-4	0.754	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9105311	2L_9105311_SNP [dm3] 2L_9105311_SNP [dm6]	G	T	2.812e^-4	0.754	INTERGENIC
3R	24397623	3R_24397623_SNP [dm3] 3R_28571901_SNP [dm6]	T	C	2.826e^-4	0.754	INTERGENIC	regulatory region REDfly_CRMs
3L	10025688	3L_10025688_SNP [dm3] 3L_10032588_SNP [dm6]	A	T	2.834e^-4	0.754	INTRON dpr6
2L	19835414	2L_19835414_SNP [dm3] 2L_19835414_SNP [dm6]	C	T	2.840e^-4	0.754	INTRON sick
2L	9105664	2L_9105664_SNP [dm3] 2L_9105664_SNP [dm6]	G	A	2.840e^-4	0.754	INTERGENIC
3L	2537851	3L_2537851_SNP [dm3] 3L_2537851_SNP [dm6]	G	T	2.844e^-4	0.754	INTRON Spn
X	14090881	X_14090881_SNP [dm3] X_14196848_SNP [dm6]	T	C	2.850e^-4	0.754	SYNONYMOUS_CODING yl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3264528	2R_3264528_SNP [dm3] 2R_7377023_SNP [dm6]	C	T	2.859e^-4	0.754	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	17947646	X_17947646_INS [dm3] X_18053613_INS [dm6]	G	GTGTGTATG	2.862e^-4	0.754	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14678933	X_14678933_SNP [dm3] X_14784900_SNP [dm6]	A	C	2.865e^-4	0.754	UTR_3_PRIME Ag5r UPSTREAM Ag5r2 DOWNSTREAM Ag5r
3L	9515096	3L_9515096_SNP [dm3] 3L_9521996_SNP [dm6]	A	G	2.866e^-4	0.754	INTRON CG33700
3R	21876295	3R_21876295_SNP [dm3] 3R_26050573_SNP [dm6]	T	C	2.872e^-4	0.754	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17947626	X_17947626_SNP [dm3] X_18053593_SNP [dm6]	G	A	2.872e^-4	0.754	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23977434	3R_23977434_SNP [dm3] 3R_28151712_SNP [dm6]	A	C	2.873e^-4	0.754	INTRON CG34354
3L	9512504	3L_9512504_SNP [dm3] 3L_9519404_SNP [dm6]	A	T	2.875e^-4	0.754	INTRON CG33700
2R	13506030	2R_13506030_SNP [dm3] 2R_17618525_SNP [dm6]	C	A	2.876e^-4	0.754	UPSTREAM CG44403 INTRON CG10936
2L	11686646	2L_11686646_SNP [dm3] 2L_11686646_SNP [dm6]	A	T	2.877e^-4	0.754	INTERGENIC
3R	4354693	3R_4354693_SNP [dm3] 3R_8528971_SNP [dm6]	C	T	2.884e^-4	0.754	UPSTREAM CG11741 INTERGENIC	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	14184655	2R_14184655_SNP [dm3] 2R_18297150_SNP [dm6]	G	A	2.888e^-4	0.754	UPSTREAM CG18539 DOWNSTREAM CG18537 INTRON sbb & 1 other
3R	16350333	3R_16350333_SNP [dm3] 3R_20524611_SNP [dm6]	T	C	2.891e^-4	0.754	INTERGENIC	TF binding site mE1_TFBS_inv
2R	18418701	2R_18418701_SNP [dm3] 2R_22531196_SNP [dm6]	A	C	2.897e^-4	0.754	INTRON px
2R	18418702	2R_18418702_SNP [dm3] 2R_22531197_SNP [dm6]	C	A	2.897e^-4	0.754	INTRON px
3R	20489370	3R_20489370_SNP [dm3] 3R_24663648_SNP [dm6]	G	T	2.907e^-4	0.754	INTRON slo	regulatory region REDfly_CRMs
2R	10417824	2R_10417824_SNP [dm3] 2R_14530319_SNP [dm6]	A	G	2.910e^-4	0.754	INTRON ttv
2L	16135106	2L_16135106_DEL [dm3] 2L_16135106_DEL [dm6]	ATGAAA	A	2.920e^-4	0.754	DOWNSTREAM CR44871 & 1 other INTRON CG34168
2R	11724800	2R_11724800_SNP [dm3] 2R_15837295_SNP [dm6]	A	T	2.922e^-4	0.754	INTRON tun	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	17908230	2R_17908230_DEL [dm3] 2R_22020725_DEL [dm6]	AA	A	2.925e^-4	0.754	INTRON CG34370
3L	14388889	3L_14388889_SNP [dm3] 3L_14395789_SNP [dm6]	G	A	2.932e^-4	0.754	INTERGENIC
2R	13242811	2R_13242811_SNP [dm3] 2R_17355306_SNP [dm6]	T	A	2.943e^-4	0.754	INTRON mbl
3L	1731091	3L_1731091_SNP [dm3] 3L_1731091_SNP [dm6]	C	T	2.949e^-4	0.754	UTR_5_PRIME drpr UTR_3_PRIME Oseg4 DOWNSTREAM Oseg4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6601300	2L_6601300_SNP [dm3] 2L_6601300_SNP [dm6]	T	A	2.951e^-4	0.754	UPSTREAM CG11319 INTERGENIC
2R	11576600	2R_11576600_SNP [dm3] 2R_15689095_SNP [dm6]	G	T	2.953e^-4	0.754	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	14816170	3L_14816170_SNP [dm3] 3L_14823070_SNP [dm6]	A	T	2.953e^-4	0.754	INTRON CG17839
3R	18780272	3R_18780272_SNP [dm3] 3R_22954550_SNP [dm6]	A	G	2.959e^-4	0.754	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	2645026	3L_2645026_SNP [dm3] 3L_2645026_SNP [dm6]	T	A	2.964e^-4	0.754	UPSTREAM CG1143 INTERGENIC
3R	16890622	3R_16890622_SNP [dm3] 3R_21064900_SNP [dm6]	G	A	2.968e^-4	0.754	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
2L	13947108	2L_13947108_SNP [dm3] 2L_13947108_SNP [dm6]	T	A	2.971e^-4	0.754	UTR_5_PRIME CG16884 INTRON Ance-3
3L	15308611	3L_15308611_SNP [dm3] 3L_15315511_SNP [dm6]	T	C	2.975e^-4	0.754	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	5758251	2L_5758251_SNP [dm3] 2L_5758251_SNP [dm6]	C	A	2.976e^-4	0.754	INTRON CG11030
X	4091100	X_4091100_SNP [dm3] X_4197067_SNP [dm6]	G	C	2.978e^-4	0.754	INTRON Fas2
3R	19357158	3R_19357158_SNP [dm3] 3R_23531436_SNP [dm6]	T	C	2.981e^-4	0.754	UPSTREAM CG10175 INTERGENIC
2L	20538018	2L_20538018_SNP [dm3] 2L_20538018_SNP [dm6]	C	T	2.982e^-4	0.754	INTERGENIC	TF binding site mE1_TFBS_inv
2R	11809811	2R_11809811_SNP [dm3] 2R_15922306_SNP [dm6]	T	C	2.989e^-4	0.754	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
3L	4841144	3L_4841144_SNP [dm3] 3L_4841144_SNP [dm6]	C	T	2.993e^-4	0.754	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	20733104	X_20733104_SNP [dm3] X_20862077_SNP [dm6]	A	G	2.994e^-4	0.754	INTRON shakB
3L	11223898	3L_11223898_SNP [dm3] 3L_11230798_SNP [dm6]	G	T	2.994e^-4	0.754	DOWNSTREAM CR45405 & 1 other INTERGENIC
3L	391184	3L_391184_SNP [dm3] 3L_391184_SNP [dm6]	C	A	2.998e^-4	0.754	DOWNSTREAM CR45378 INTRON trh
3L	14561228	3L_14561228_SNP [dm3] 3L_14568128_SNP [dm6]	T	G	3.004e^-4	0.754	UTR_3_PRIME CG42758
2L	638038	2L_638038_SNP [dm3] 2L_638038_SNP [dm6]	G	C	3.007e^-4	0.754	INTERGENIC
3R	25570980	3R_25570980_SNP [dm3] 3R_29745258_SNP [dm6]	T	A	3.015e^-4	0.754	UPSTREAM IntS11 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	3603547	2R_3603547_SNP [dm3] 2R_7716042_SNP [dm6]	T	G	3.022e^-4	0.754	NON_SYNONYMOUS_CODING CG1946 DOWNSTREAM CG18812	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12930323	2L_12930323_SNP [dm3] 2L_12930323_SNP [dm6]	A	C	3.023e^-4	0.754	DOWNSTREAM ACXE INTERGENIC
2L	16619019	2L_16619019_SNP [dm3] 2L_16619019_SNP [dm6]	T	A	3.024e^-4	0.754	INTRON CG42389	TF binding site BDTNP1_TFBS_dl
3L	20195054	3L_20195054_SNP [dm3] 3L_20201954_SNP [dm6]	T	C	3.024e^-4	0.754	UPSTREAM obst-F DOWNSTREAM CG7298 INTERGENIC
2L	8447012	2L_8447012_SNP [dm3] 2L_8447012_SNP [dm6]	G	T	3.028e^-4	0.754	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_inv
3R	18780271	3R_18780271_SNP [dm3] 3R_22954549_SNP [dm6]	G	A	3.033e^-4	0.754	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	16685557	X_16685557_SNP [dm3] X_16791524_SNP [dm6]	T	A	3.035e^-4	0.754	UPSTREAM CG4768 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12633060	2R_12633060_SNP [dm3] 2R_16745555_SNP [dm6]	C	T	3.040e^-4	0.754	UTR_3_PRIME CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad
X	3988585	X_3988585_SNP [dm3] X_4094552_SNP [dm6]	T	A	3.045e^-4	0.754	INTERGENIC
3R	24132528	3R_24132528_SNP [dm3] 3R_28306806_SNP [dm6]	T	A	3.045e^-4	0.754	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	1705378	3R_1705378_SNP [dm3] 3R_5879656_SNP [dm6]	T	G	3.046e^-4	0.754	SYNONYMOUS_CODING CG34113 INTRON CG34113
X	2311636	X_2311636_SNP [dm3] X_2417603_SNP [dm6]	A	T	3.046e^-4	0.754	INTERGENIC	TF binding site mE1_TFBS_sens
X	5440782	X_5440782_SNP [dm3] X_5546749_SNP [dm6]	T	C	3.051e^-4	0.754	SYNONYMOUS_CODING Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	6105689	3R_6105689_SNP [dm3] 3R_10279967_SNP [dm6]	G	A	3.053e^-4	0.754	INTRON CG43143
2L	11594632	2L_11594632_SNP [dm3] 2L_11594632_SNP [dm6]	T	C	3.055e^-4	0.754	INTRON kek2
2R	14678576	2R_14678576_SNP [dm3] 2R_18791071_SNP [dm6]	C	A	3.064e^-4	0.754	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6105630	3R_6105630_SNP [dm3] 3R_10279908_SNP [dm6]	T	A	3.066e^-4	0.754	INTRON CG43143
2L	5519040	2L_5519040_SNP [dm3] 2L_5519040_SNP [dm6]	G	C	3.071e^-4	0.754	SYNONYMOUS_CODING CG7382 DOWNSTREAM CG14020	TF binding site BDTNP1_TFBS_hb mE1_TFBS_sens
2L	16840396	2L_16840396_SNP [dm3] 2L_16840396_SNP [dm6]	T	C	3.077e^-4	0.754	UTR_3_PRIME SclA & 1 other INTRON SclA
3L	2683655	3L_2683655_SNP [dm3] 3L_2683655_SNP [dm6]	A	G	3.077e^-4	0.754	INTRON Fife
3L	6689263	3L_6689263_SNP [dm3] 3L_6696163_SNP [dm6]	A	T	3.077e^-4	0.754	INTRON SP1173
2L	15959956	2L_15959956_SNP [dm3] 2L_15959956_SNP [dm6]	G	C	3.084e^-4	0.754	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
2L	21906150	2L_21906150_DEL [dm3] 2L_21906150_DEL [dm6]	CACCTCTG	C	3.085e^-4	0.754	UPSTREAM CG1428 INTERGENIC
2R	17920112	2R_17920112_SNP [dm3] 2R_22032607_SNP [dm6]	G	T	3.097e^-4	0.754	INTRON CG34370
3R	14293780	3R_14293780_DEL [dm3] 3R_18468058_DEL [dm6]	TTTT	T	3.106e^-4	0.754	INTRON fru
2R	8371767	2R_8371767_SNP [dm3] 2R_12484262_SNP [dm6]	T	A	3.107e^-4	0.754	INTRON Dh44-R2
3L	15308481	3L_15308481_SNP [dm3] 3L_15315381_SNP [dm6]	G	A	3.109e^-4	0.754	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
X	14305198	X_14305198_SNP [dm3] X_14411165_SNP [dm6]	T	A	3.109e^-4	0.754	INTRON dpr8
2R	6658026	2R_6658026_SNP [dm3] 2R_10770521_SNP [dm6]	A	G	3.113e^-4	0.754	INTRON CG33144
X	8628993	X_8628993_SNP [dm3] X_8734960_SNP [dm6]	G	A	3.114e^-4	0.754	INTERGENIC
2R	17887141	2R_17887141_SNP [dm3] 2R_21999636_SNP [dm6]	C	A	3.126e^-4	0.754	INTRON CG34370
3R	20819924	3R_20819924_SNP [dm3] 3R_24994202_SNP [dm6]	C	A	3.126e^-4	0.754	INTRON tnc
X	11756868	X_11756868_SNP [dm3] X_11862835_SNP [dm6]	G	T	3.126e^-4	0.754	SYNONYMOUS_CODING ATP7	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3962708	3R_3962708_SNP [dm3] 3R_8136986_SNP [dm6]	C	T	3.131e^-4	0.754	INTERGENIC
2R	495298	2R_495298_SNP [dm3] 2R_4607793_SNP [dm6]	C	T	3.135e^-4	0.754	INTRON p120ctn	transposable element FlyBase
3R	11322549	3R_11322549_SNP [dm3] 3R_15496827_SNP [dm6]	T	C	3.140e^-4	0.754	INTERGENIC
3L	20924804	3L_20924804_SNP [dm3] 3L_20931704_SNP [dm6]	T	C	3.165e^-4	0.754	INTRON fng	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4821762	3L_4821762_DEL [dm3] 3L_4821762_DEL [dm6]	ATTCTAGCACA...	A	3.170e^-4	0.754	INTRON Dhc64C
2R	15428084	2R_15428084_SNP [dm3] 2R_19540579_SNP [dm6]	A	G	3.176e^-4	0.754	INTRON sm
3R	25753160	3R_25753160_SNP [dm3] 3R_29927438_SNP [dm6]	T	C	3.177e^-4	0.754	UTR_5_PRIME CG15522
2L	19079235	2L_19079235_SNP [dm3] 2L_19079235_SNP [dm6]	T	C	3.178e^-4	0.754	UPSTREAM CG10700 DOWNSTREAM Lim3 INTERGENIC
3R	26618148	3R_26618148_SNP [dm3] 3R_30792426_SNP [dm6]	T	G	3.186e^-4	0.754	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
2R	15903063	2R_15903063_SNP [dm3] 2R_20015558_SNP [dm6]	A	C	3.194e^-4	0.754	DOWNSTREAM CR44629 & 1 other INTERGENIC
3L	7257565	3L_7257565_SNP [dm3] 3L_7264465_SNP [dm6]	C	T	3.196e^-4	0.754	UPSTREAM CG14830 INTERGENIC
3R	10437015	3R_10437015_SNP [dm3] 3R_14611293_SNP [dm6]	A	T	3.196e^-4	0.754	INTRON CG14853
3R	12895575	3R_12895575_DEL [dm3] 3R_17069853_DEL [dm6]	AA	A	3.205e^-4	0.754	UTR_3_PRIME Dad DOWNSTREAM Ns1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	19522673	2R_19522673_SNP [dm3] 2R_23635150_SNP [dm6]	G	T	3.208e^-4	0.754	INTRON retn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	13570372	3R_13570372_SNP [dm3] 3R_17744650_SNP [dm6]	C	A	3.213e^-4	0.754	INTRON TyrRII	TF binding site mE1_TFBS_cad
3L	10025717	3L_10025717_DEL [dm3] 3L_10032617_DEL [dm6]	GCTTTTGTTTAGTC...	G	3.214e^-4	0.754	INTRON dpr6
2R	11571935	2R_11571935_SNP [dm3] 2R_15684430_SNP [dm6]	G	T	3.219e^-4	0.754	SYNONYMOUS_CODING Ranbp11 DOWNSTREAM CG30082 EXON CR43429	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22229175	3R_22229175_SNP [dm3] 3R_26403453_SNP [dm6]	A	G	3.227e^-4	0.754	NON_SYNONYMOUS_CODING ppk15
2R	14271099	2R_14271099_SNP [dm3] 2R_18383594_SNP [dm6]	G	A	3.227e^-4	0.754	UPSTREAM IM1 & 2 others INTERGENIC
3L	1734682	3L_1734682_DEL [dm3] 3L_1734682_DEL [dm6]	AA	A	3.229e^-4	0.754	INTRON Oseg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	10517805	X_10517805_SNP [dm3] X_10623772_SNP [dm6]	G	C	3.231e^-4	0.754	UTR_3_PRIME CG9806 UPSTREAM Rab9Db
3L	10697089	3L_10697089_INS [dm3] 3L_10703989_INS [dm6]	A	AGAAAGA	3.233e^-4	0.754	INTERGENIC
2L	10258426	2L_10258426_SNP [dm3] 2L_10258426_SNP [dm6]	A	G	3.241e^-4	0.754	INTRON Pten
2L	7934932	2L_7934932_SNP [dm3] 2L_7934932_SNP [dm6]	A	C	3.248e^-4	0.754	INTRON Snoo
2L	21906159	2L_21906159_DEL [dm3] 2L_21906159_DEL [dm6]	TCGACA	T	3.265e^-4	0.754	UPSTREAM CG1428 INTERGENIC
X	12850971	X_12850971_SNP [dm3] X_12956938_SNP [dm6]	G	T	3.267e^-4	0.754	INTRON hec
3R	8117798	3R_8117798_SNP [dm3] 3R_12292076_SNP [dm6]	C	T	3.277e^-4	0.754	INTRON svp
3L	6899768	3L_6899768_SNP [dm3] 3L_6906668_SNP [dm6]	A	T	3.279e^-4	0.754	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11724772	2R_11724772_SNP [dm3] 2R_15837267_SNP [dm6]	C	T	3.281e^-4	0.754	INTRON tun	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	2279895	2L_2279895_SNP [dm3] 2L_2279895_SNP [dm6]	G	A	3.284e^-4	0.754	UPSTREAM CR43753 INTERGENIC
3R	9817312	3R_9817312_SNP [dm3] 3R_13991590_SNP [dm6]	A	G	3.288e^-4	0.754	INTRON rdx	TF binding site mE1_TFBS_cad
2R	9940463	2R_9940463_SNP [dm3] 2R_14052958_SNP [dm6]	G	C	3.292e^-4	0.754	INTRON mam
3L	9716375	3L_9716375_SNP [dm3] 3L_9723275_SNP [dm6]	G	T	3.295e^-4	0.754	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14293806	3R_14293806_SNP [dm3] 3R_18468084_SNP [dm6]	G	A	3.297e^-4	0.754	INTRON fru
3R	25571687	3R_25571687_SNP [dm3] 3R_29745965_SNP [dm6]	C	T	3.301e^-4	0.754	SYNONYMOUS_CODING IntS11 UPSTREAM CG7609	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	6283545	3R_6283545_DEL [dm3] 3R_10457823_DEL [dm6]	GC	G	3.304e^-4	0.754	INTERGENIC
X	11409369	X_11409369_SNP [dm3] X_11515336_SNP [dm6]	T	G	3.307e^-4	0.754	INTRON Drak	TF binding site mE1_TFBS_Kr
2L	16135142	2L_16135142_SNP [dm3] 2L_16135142_SNP [dm6]	C	T	3.308e^-4	0.754	DOWNSTREAM CR44871 & 1 other INTRON CG34168
X	10517804	X_10517804_SNP [dm3] X_10623771_SNP [dm6]	A	G	3.318e^-4	0.754	UTR_3_PRIME CG9806 UPSTREAM Rab9Db
3L	14385472	3L_14385472_INS [dm3] 3L_14392372_INS [dm6]	C	CT	3.349e^-4	0.754	INTERGENIC
X	7620883	X_7620883_SNP [dm3] X_7726850_SNP [dm6]	G	A	3.350e^-4	0.754	SYNONYMOUS_CODING NELF-B DOWNSTREAM Hira	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19804784	2L_19804784_SNP [dm3] 2L_19804784_SNP [dm6]	A	C	3.351e^-4	0.754	INTRON sick
2L	17327630	2L_17327630_SNP [dm3] 2L_17327630_SNP [dm6]	C	G	3.354e^-4	0.754	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9508876	3L_9508876_SNP [dm3] 3L_9515776_SNP [dm6]	G	T	3.354e^-4	0.754	INTRON CG33700
2L	6511556	2L_6511556_SNP [dm3] 2L_6511556_SNP [dm6]	T	C	3.357e^-4	0.754	INTRON CG31637
2L	8558261	2L_8558261_DEL [dm3] 2L_8558261_DEL [dm6]	ACAT	A	3.363e^-4	0.754	INTRON Sema-1a	TF binding site mE1_TFBS_cad
3L	9688724	3L_9688724_SNP [dm3] 3L_9695624_SNP [dm6]	T	A	3.381e^-4	0.754	UPSTREAM CG6767 INTRON CG6767 EXON CR45121	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7467081	3L_7467081_SNP [dm3] 3L_7473981_SNP [dm6]	A	G	3.382e^-4	0.754	INTERGENIC
2L	13832230	2L_13832230_SNP [dm3] 2L_13832230_SNP [dm6]	C	T	3.386e^-4	0.754	SYNONYMOUS_CODING DNApol-gamma35 UTR_3_PRIME CG33649 DOWNSTREAM Orc5	TF binding site mE1_TFBS_sens
X	11756604	X_11756604_SNP [dm3] X_11862571_SNP [dm6]	T	C	3.394e^-4	0.754	SYNONYMOUS_CODING ATP7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21896969	2L_21896969_SNP [dm3] 2L_21896969_SNP [dm6]	A	C	3.403e^-4	0.754	SYNONYMOUS_CODING CG11629	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5702213	X_5702213_SNP [dm3] X_5808180_SNP [dm6]	T	G	3.403e^-4	0.754	UPSTREAM Prosbeta2R1 INTERGENIC
3L	20901759	3L_20901759_SNP [dm3] 3L_20908659_SNP [dm6]	T	C	3.404e^-4	0.754	INTERGENIC
3L	7257534	3L_7257534_SNP [dm3] 3L_7264434_SNP [dm6]	T	A	3.405e^-4	0.754	UPSTREAM CG14830 INTERGENIC
X	9423724	X_9423724_SNP [dm3] X_9529691_SNP [dm6]	C	A	3.405e^-4	0.754	INTRON CG32700
2R	5980533	2R_5980533_DEL [dm3] 2R_10093028_DEL [dm6]	CACAAATTAATGGC...	C	3.413e^-4	0.754	INTRON CG2269
2L	19826798	2L_19826798_SNP [dm3] 2L_19826798_SNP [dm6]	G	C	3.421e^-4	0.754	UTR_5_PRIME sick UPSTREAM sick INTRON sick
X	21150033	X_21150033_SNP [dm3] X_21279006_SNP [dm6]	A	T	3.427e^-4	0.754	INTRON CG32521
X	21458729	X_21458729_SNP [dm3] X_21587702_SNP [dm6]	C	T	3.437e^-4	0.754	INTERGENIC
X	6643090	X_6643090_INS [dm3] X_6749057_INS [dm6]	A	ACA	3.437e^-4	0.754	INTRON CG14439
X	8291487	X_8291487_SNP [dm3] X_8397454_SNP [dm6]	T	A	3.438e^-4	0.754	UTR_3_PRIME CG15345
3L	14541160	3L_14541160_SNP [dm3] 3L_14548060_SNP [dm6]	T	C	3.449e^-4	0.754	INTRON CG9238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7064106	X_7064106_SNP [dm3] X_7170073_SNP [dm6]	A	T	3.450e^-4	0.754	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3L	13870686	3L_13870686_SNP [dm3] 3L_13877586_SNP [dm6]	T	G	3.464e^-4	0.754	INTRON dysc
2L	16135150	2L_16135150_SNP [dm3] 2L_16135150_SNP [dm6]	G	T	3.471e^-4	0.754	DOWNSTREAM CR44871 & 1 other INTRON CG34168
3L	13310275	3L_13310275_SNP [dm3] 3L_13317175_SNP [dm6]	C	A	3.474e^-4	0.754	INTERGENIC
2R	19553891	2R_19553891_SNP [dm3] 2R_23666368_SNP [dm6]	C	T	3.481e^-4	0.754	UPSTREAM Pde8 INTRON Pde8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	4206654	X_4206654_SNP [dm3] X_4312621_SNP [dm6]	G	A	3.483e^-4	0.754	UPSTREAM CG15579 INTRON CR44957
2L	19079217	2L_19079217_SNP [dm3] 2L_19079217_SNP [dm6]	A	T	3.492e^-4	0.754	UPSTREAM CG10700 DOWNSTREAM Lim3 INTERGENIC
3L	391931	3L_391931_INS [dm3] 3L_391931_INS [dm6]	A	ATTGGATAATTG...	3.493e^-4	0.754	DOWNSTREAM CR45378 INTRON trh
3R	4349394	3R_4349394_SNP [dm3] 3R_8523672_SNP [dm6]	G	A	3.493e^-4	0.754	UPSTREAM CG31259 DOWNSTREAM CG31454 INTERGENIC
2L	9111772	2L_9111772_SNP [dm3] 2L_9111772_SNP [dm6]	G	C	3.493e^-4	0.754	UPSTREAM Or30a INTERGENIC
2L	19797389	2L_19797389_SNP [dm3] 2L_19797389_SNP [dm6]	T	C	3.496e^-4	0.754	INTRON sick
2R	13242852	2R_13242852_SNP [dm3] 2R_17355347_SNP [dm6]	T	C	3.497e^-4	0.754	INTRON mbl
3R	965045	3R_965045_SNP [dm3] 3R_5139323_SNP [dm6]	G	A	3.502e^-4	0.754	UPSTREAM CG12589 INTERGENIC
2L	2660003	2L_2660003_SNP [dm3] 2L_2660003_SNP [dm6]	T	A	3.504e^-4	0.754	INTERGENIC
3L	5706417	3L_5706417_SNP [dm3] 3L_5713317_SNP [dm6]	G	T	3.513e^-4	0.754	UPSTREAM CG44521 INTRON sif
3L	1151921	3L_1151921_SNP [dm3] 3L_1151921_SNP [dm6]	T	G	3.515e^-4	0.754	INTRON bab2
3R	22018071	3R_22018071_SNP [dm3] 3R_26192349_SNP [dm6]	A	T	3.517e^-4	0.754	INTERGENIC
3R	27129738	3R_27129738_SNP [dm3] 3R_31304016_SNP [dm6]	G	A	3.533e^-4	0.754	SYNONYMOUS_CODING CG11340
3R	26912398	3R_26912398_SNP [dm3] 3R_31086676_SNP [dm6]	G	A	3.535e^-4	0.754	INTERGENIC
X	5228684	X_5228684_SNP [dm3] X_5334651_SNP [dm6]	C	T	3.540e^-4	0.754	DOWNSTREAM CanB INTERGENIC
3L	8391974	3L_8391974_SNP [dm3] 3L_8398874_SNP [dm6]	G	A	3.542e^-4	0.754	INTRON CG7120
2R	14271036	2R_14271036_SNP [dm3] 2R_18383531_SNP [dm6]	A	T	3.544e^-4	0.754	UPSTREAM IM1 & 1 other INTERGENIC
2R	18769488	2R_18769488_SNP [dm3] 2R_22881965_SNP [dm6]	G	A	3.545e^-4	0.754	DOWNSTREAM PIP5K59B & 1 other INTRON CG3501	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9849341	X_9849341_SNP [dm3] X_9955308_SNP [dm6]	C	T	3.548e^-4	0.754	INTERGENIC
X	13256704	X_13256704_SNP [dm3] X_13362671_SNP [dm6]	G	C	3.550e^-4	0.754	INTRON Syt12
3L	12023901	3L_12023901_SNP [dm3] 3L_12030801_SNP [dm6]	C	T	3.551e^-4	0.754	INTRON rols	TF binding site mE1_TFBS_cad
3L	12223152	3L_12223152_SNP [dm3] 3L_12230052_SNP [dm6]	A	T	3.552e^-4	0.754	INTRON app
2R	16289319	2R_16289319_SNP [dm3] 2R_20401814_SNP [dm6]	C	T	3.553e^-4	0.754	INTERGENIC
2R	7601899	2R_7601899_INS [dm3] 2R_11714394_INS [dm6]	C	ATGGTA	3.554e^-4	0.754	INTRON pyr
3R	25672069	3R_25672069_SNP [dm3] 3R_29846347_SNP [dm6]	T	A	3.555e^-4	0.754	INTRON Cad99C
2R	17889189	2R_17889189_SNP [dm3] 2R_22001684_SNP [dm6]	C	G	3.555e^-4	0.754	INTRON CG34370
3L	10282597	3L_10282597_SNP [dm3] 3L_10289497_SNP [dm6]	A	G	3.560e^-4	0.754	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20489343	3R_20489343_SNP [dm3] 3R_24663621_SNP [dm6]	G	A	3.561e^-4	0.754	INTRON slo	regulatory region REDfly_CRMs
X	17061761	X_17061761_SNP [dm3] X_17167728_SNP [dm6]	T	A	3.565e^-4	0.754	INTRON baz
2R	10345222	2R_10345222_INS [dm3] 2R_14457717_INS [dm6]	T	TCTCTGGAAAACTT...	3.571e^-4	0.754	UPSTREAM Oaz INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	15615013	3L_15615013_SNP [dm3] 3L_15621913_SNP [dm6]	T	C	3.571e^-4	0.754	SYNONYMOUS_CODING CG7372 INTRON comm3	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	4512885	2L_4512885_SNP [dm3] 2L_4512885_SNP [dm6]	C	T	3.572e^-4	0.754	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26912399	3R_26912399_SNP [dm3] 3R_31086677_SNP [dm6]	A	T	3.574e^-4	0.754	INTERGENIC
2L	648461	2L_648461_DEL [dm3] 2L_648461_DEL [dm6]	AAG	A	3.574e^-4	0.754	INTRON ds
2R	12112716	2R_12112716_SNP [dm3] 2R_16225211_SNP [dm6]	A	G	3.576e^-4	0.754	UTR_5_PRIME CG15706
3R	12950029	3R_12950029_DEL [dm3] 3R_17124307_DEL [dm6]	TT	T	3.592e^-4	0.754	UPSTREAM CG45079 INTRON cher
X	4091094	X_4091094_DEL [dm3] X_4197061_DEL [dm6]	AAA	A	3.599e^-4	0.754	INTRON Fas2
3R	4350226	3R_4350226_SNP [dm3] 3R_8524504_SNP [dm6]	C	T	3.601e^-4	0.754	SYNONYMOUS_CODING CG31259 DOWNSTREAM CG31454
X	7613947	X_7613947_SNP [dm3] X_7719914_SNP [dm6]	C	T	3.604e^-4	0.754	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10085537	2L_10085537_DEL [dm3] 2L_10085537_DEL [dm6]	CC	C	3.613e^-4	0.754	INTRON CG44153
3L	8681778	3L_8681778_SNP [dm3] 3L_8688678_SNP [dm6]	A	C	3.616e^-4	0.754	INTERGENIC
3L	18151516	3L_18151516_SNP [dm3] 3L_18158416_SNP [dm6]	C	A	3.616e^-4	0.754	NON_SYNONYMOUS_CODING CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13683156	3R_13683156_SNP [dm3] 3R_17857434_SNP [dm6]	G	A	3.617e^-4	0.754	INTRON tinc
3R	25617603	3R_25617603_SNP [dm3] 3R_29791881_SNP [dm6]	G	T	3.623e^-4	0.754	SYNONYMOUS_CODING kay	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6253307	3R_6253307_SNP [dm3] 3R_10427585_SNP [dm6]	G	T	3.627e^-4	0.754	INTERGENIC
3R	12353263	3R_12353263_SNP [dm3] 3R_16527541_SNP [dm6]	C	T	3.627e^-4	0.754	INTRON CG42342	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11322539	3R_11322539_DEL [dm3] 3R_15496817_DEL [dm6]	TC	T	3.631e^-4	0.754	INTERGENIC
2L	8450856	2L_8450856_SNP [dm3] 2L_8450856_SNP [dm6]	A	C	3.631e^-4	0.754	SYNONYMOUS_CODING fu12
2L	3245320	2L_3245320_SNP [dm3] 2L_3245320_SNP [dm6]	T	C	3.633e^-4	0.754	INTERGENIC
3L	11584053	3L_11584053_SNP [dm3] 3L_11590953_SNP [dm6]	T	C	3.636e^-4	0.754	SYNONYMOUS_CODING CG33268 DOWNSTREAM CG7377
2R	18817445	2R_18817445_SNP [dm3] 2R_22929922_SNP [dm6]	G	A	3.636e^-4	0.754	NON_SYNONYMOUS_CODING CG42678 UTR_3_PRIME CG42678 DOWNSTREAM CG42678
2L	357751	2L_357751_SNP [dm3] 2L_357751_SNP [dm6]	G	C	3.637e^-4	0.754	SPLICE_SITE_REGION Ent1 UTR_5_PRIME Ent1 DOWNSTREAM CR45367 INTRON Ent1 EXON CR45366	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	25776171	3R_25776171_SNP [dm3] 3R_29950449_SNP [dm6]	C	T	3.640e^-4	0.754	DOWNSTREAM TkR99D INTERGENIC
3L	2645886	3L_2645886_SNP [dm3] 3L_2645886_SNP [dm6]	C	A	3.645e^-4	0.754	NON_SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18480919	3R_18480919_SNP [dm3] 3R_22655197_SNP [dm6]	T	G	3.647e^-4	0.754	INTRON CG45058
3L	9690515	3L_9690515_SNP [dm3] 3L_9697415_SNP [dm6]	T	A	3.652e^-4	0.754	UPSTREAM CG6767 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	17951830	X_17951830_SNP [dm3] X_18057797_SNP [dm6]	A	C	3.655e^-4	0.754	INTRON Sh
2L	21906528	2L_21906528_SNP [dm3] 2L_21906528_SNP [dm6]	A	G	3.657e^-4	0.754	NON_SYNONYMOUS_CODING CG1428	TF binding site mE1_TFBS_cad
2L	19946219	2L_19946219_SNP [dm3] 2L_19946219_SNP [dm6]	C	G	3.663e^-4	0.754	SYNONYMOUS_CODING sick INTRON sick	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4956302	2R_4956302_SNP [dm3] 2R_9068797_SNP [dm6]	C	T	3.670e^-4	0.754	UPSTREAM ana INTRON ana
3R	20489476	3R_20489476_SNP [dm3] 3R_24663754_SNP [dm6]	G	T	3.675e^-4	0.754	INTRON slo	regulatory region REDfly_CRMs
X	11320928	X_11320928_MNP [dm3] X_11426895_MNP [dm6]	GCGG	TTTT	3.682e^-4	0.754	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11320932	X_11320932_INS [dm3] X_11426899_INS [dm6]	A	AAT	3.682e^-4	0.754	INTRON Gs2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	27006630	3R_27006630_SNP [dm3] 3R_31180908_SNP [dm6]	A	T	3.685e^-4	0.754	INTRON mesh	TF binding site mE1_TFBS_cad
3L	2998253	3L_2998253_SNP [dm3] 3L_2998253_SNP [dm6]	A	G	3.687e^-4	0.754	INTERGENIC
2L	12527581	2L_12527581_SNP [dm3] 2L_12527581_SNP [dm6]	A	G	3.703e^-4	0.754	INTRON bun	TF binding site BDTNP1_TFBS_dl
3L	4840793	3L_4840793_SNP [dm3] 3L_4840793_SNP [dm6]	T	G	3.705e^-4	0.754	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	21458688	X_21458688_SNP [dm3] X_21587661_SNP [dm6]	A	G	3.707e^-4	0.754	INTERGENIC	transposable element FlyBase
3R	24829701	3R_24829701_SNP [dm3] 3R_29003979_SNP [dm6]	C	G	3.711e^-4	0.754	INTRON wat
X	16341636	X_16341636_DEL [dm3] X_16447603_DEL [dm6]	TGACAGCGCGCGAGTACAA...	T	3.715e^-4	0.754	UTR_3_PRIME CG34015 UPSTREAM eIF-2alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10695984	3R_10695984_SNP [dm3] 3R_14870262_SNP [dm6]	G	A	3.719e^-4	0.754	INTRON btsz
2R	17944179	2R_17944179_SNP [dm3] 2R_22056674_SNP [dm6]	G	A	3.720e^-4	0.754	SYNONYMOUS_CODING CG13500	TF binding site mE1_TFBS_cad
3R	6105593	3R_6105593_SNP [dm3] 3R_10279871_SNP [dm6]	C	T	3.726e^-4	0.754	INTRON CG43143
3L	10025690	3L_10025690_DEL [dm3] 3L_10032590_DEL [dm6]	TCAAACGTGATATGAAATAT...	A	3.729e^-4	0.754	INTRON dpr6
X	5661593	X_5661593_SNP [dm3] X_5767560_SNP [dm6]	C	T	3.736e^-4	0.754	SYNONYMOUS_CODING CG3097 INTRON CG42699	TF binding site mE1_TFBS_sens
3R	13570318	3R_13570318_SNP [dm3] 3R_17744596_SNP [dm6]	C	A	3.747e^-4	0.754	INTRON TyrRII	TF binding site mE1_TFBS_cad
3L	13990762	3L_13990762_SNP [dm3] 3L_13997662_SNP [dm6]	G	A	3.750e^-4	0.754	NON_SYNONYMOUS_CODING CG17361 DOWNSTREAM CG17359	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9687137	3L_9687137_SNP [dm3] 3L_9694037_SNP [dm6]	T	C	3.756e^-4	0.754	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	9687160	3L_9687160_SNP [dm3] 3L_9694060_SNP [dm6]	G	T	3.756e^-4	0.754	UPSTREAM CR45121 INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	22191164	3L_22191164_SNP [dm3] 3L_22198064_SNP [dm6]	G	A	3.757e^-4	0.754	INTRON olf413
2L	20260013	2L_20260013_DEL [dm3] 2L_20260013_DEL [dm6]	CC	C	3.759e^-4	0.754	INTERGENIC
3L	14835265	3L_14835265_SNP [dm3] 3L_14842165_SNP [dm6]	T	C	3.760e^-4	0.754	INTRON CG17839
2R	14271043	2R_14271043_DEL [dm3] 2R_18383538_DEL [dm6]	TAATGTCTTC	T	3.769e^-4	0.754	UPSTREAM IM1 & 1 other INTERGENIC
X	20262200	X_20262200_SNP [dm3] X_20391173_SNP [dm6]	G	A	3.784e^-4	0.754	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20215234	X_20215234_SNP [dm3] X_20344207_SNP [dm6]	C	A	3.791e^-4	0.754	INTERGENIC	transposable element FlyBase
2R	8137699	2R_8137699_SNP [dm3] 2R_12250194_SNP [dm6]	T	C	3.800e^-4	0.754	INTERGENIC
3L	7479886	3L_7479886_SNP [dm3] 3L_7486786_SNP [dm6]	C	T	3.800e^-4	0.754	INTRON mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7257564	3L_7257564_SNP [dm3] 3L_7264464_SNP [dm6]	C	T	3.806e^-4	0.754	UPSTREAM CG14830 INTERGENIC
X	21946828	X_21946828_SNP [dm3] X_22544992_SNP [dm6]	A	G	3.809e^-4	0.754	UPSTREAM CG17599 INTERGENIC
3R	16889961	3R_16889961_SNP [dm3] 3R_21064239_SNP [dm6]	A	G	3.811e^-4	0.754	INTRON Cortactin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	21876370	3R_21876370_SNP [dm3] 3R_26050648_SNP [dm6]	T	G	3.814e^-4	0.754	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18640623	X_18640623_INS [dm3] X_18746590_INS [dm6]	G	GG	3.816e^-4	0.754	UTR_3_PRIME CG12609
2L	15560377	2L_15560377_SNP [dm3] 2L_15560377_SNP [dm6]	T	A	3.821e^-4	0.754	INTRON kek3
2R	18985584	2R_18985584_SNP [dm3] 2R_23098061_SNP [dm6]	T	C	3.821e^-4	0.754	INTERGENIC
2R	19504762	2R_19504762_SNP [dm3] 2R_23617239_SNP [dm6]	G	A	3.821e^-4	0.754	UPSTREAM CG17664 INTERGENIC	TF binding site mE1_TFBS_sens
2R	20789054	2R_20789054_SNP [dm3] 2R_24901531_SNP [dm6]	C	T	3.822e^-4	0.754	UPSTREAM Tpc2 INTRON NaCP60E	TF binding site mE1_TFBS_HSA
2L	14702724	2L_14702724_SNP [dm3] 2L_14702724_SNP [dm6]	C	G	3.827e^-4	0.754	INTERGENIC
2L	2928184	2L_2928184_SNP [dm3] 2L_2928184_SNP [dm6]	T	C	3.828e^-4	0.754	INTRON lilli
3L	3966356	3L_3966356_SNP [dm3] 3L_3966356_SNP [dm6]	T	C	3.828e^-4	0.754	INTERGENIC
X	10446501	X_10446501_SNP [dm3] X_10552468_SNP [dm6]	T	C	3.838e^-4	0.754	INTRON spri
2R	12281996	2R_12281996_SNP [dm3] 2R_16394491_SNP [dm6]	T	C	3.841e^-4	0.754	INTRON Sema-2b
2R	13212237	2R_13212237_SNP [dm3] 2R_17324732_SNP [dm6]	A	G	3.846e^-4	0.754	INTRON mbl
2R	5977602	2R_5977602_SNP [dm3] 2R_10090097_SNP [dm6]	C	T	3.847e^-4	0.754	INTRON CG2269
3R	16890626	3R_16890626_SNP [dm3] 3R_21064904_SNP [dm6]	A	T	3.851e^-4	0.754	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3R	18088167	3R_18088167_SNP [dm3] 3R_22262445_SNP [dm6]	T	C	3.855e^-4	0.754	INTRON SKIP
3L	13549577	3L_13549577_SNP [dm3] 3L_13556477_SNP [dm6]	G	A	3.856e^-4	0.754	INTRON bru-3
3R	13682419	3R_13682419_SNP [dm3] 3R_17856697_SNP [dm6]	T	C	3.863e^-4	0.754	INTRON tinc
3R	13682437	3R_13682437_SNP [dm3] 3R_17856715_SNP [dm6]	G	C	3.863e^-4	0.754	INTRON tinc
2R	18818144	2R_18818144_SNP [dm3] 2R_22930621_SNP [dm6]	C	A	3.872e^-4	0.754	NON_SYNONYMOUS_CODING CG42678 DOWNSTREAM CG42678 INTRON CG42678	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	20300669	3R_20300669_SNP [dm3] 3R_24474947_SNP [dm6]	A	G	3.877e^-4	0.754	INTERGENIC
2L	3301706	2L_3301706_SNP [dm3] 2L_3301706_SNP [dm6]	G	A	3.881e^-4	0.754	UTR_5_PRIME CG9663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
X	21458803	X_21458803_SNP [dm3] X_21587776_SNP [dm6]	T	C	3.884e^-4	0.754	INTERGENIC
3L	14057292	3L_14057292_SNP [dm3] 3L_14064192_SNP [dm6]	C	T	3.895e^-4	0.754	INTRON CG32138	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	10699904	3L_10699904_INS [dm3] 3L_10706804_INS [dm6]	A	AA	3.898e^-4	0.754	INTERGENIC
2L	19830693	2L_19830693_SNP [dm3] 2L_19830693_SNP [dm6]	A	G	3.903e^-4	0.754	INTRON sick
3R	18480164	3R_18480164_SNP [dm3] 3R_22654442_SNP [dm6]	C	T	3.907e^-4	0.754	INTRON CG45058
X	7622443	X_7622443_SNP [dm3] X_7728410_SNP [dm6]	G	A	3.910e^-4	0.754	UPSTREAM CG12155 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	20293172	2L_20293172_SNP [dm3] 2L_20293172_SNP [dm6]	T	A	3.913e^-4	0.754	INTERGENIC
2R	14077068	2R_14077068_SNP [dm3] 2R_18189563_SNP [dm6]	G	A	3.916e^-4	0.754	UTR_3_PRIME CG14500 INTRON CG33958
2R	8144149	2R_8144149_SNP [dm3] 2R_12256644_SNP [dm6]	T	A	3.922e^-4	0.754	UPSTREAM Vha36-2 DOWNSTREAM CG13168 INTERGENIC
X	5452712	X_5452712_SNP [dm3] X_5558679_SNP [dm6]	C	A	3.928e^-4	0.754	INTRON Vsx2
X	20267857	X_20267857_SNP [dm3] X_20396830_SNP [dm6]	C	T	3.943e^-4	0.754	INTRON HERC2	TF binding site BDTNP1_TFBS_da
3R	10811112	3R_10811112_SNP [dm3] 3R_14985390_SNP [dm6]	T	C	3.944e^-4	0.754	INTERGENIC
3R	8480553	3R_8480553_SNP [dm3] 3R_12654831_SNP [dm6]	T	C	3.945e^-4	0.754	UTR_5_PRIME CG6225 INTRON CG6225	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9685540	3L_9685540_SNP [dm3] 3L_9692440_SNP [dm6]	A	G	3.947e^-4	0.754	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	19830653	2L_19830653_SNP [dm3] 2L_19830653_SNP [dm6]	C	G	3.951e^-4	0.754	INTRON sick
2R	3265898	2R_3265898_SNP [dm3] 2R_7378393_SNP [dm6]	C	A	3.953e^-4	0.754	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
2L	8807137	2L_8807137_SNP [dm3] 2L_8807137_SNP [dm6]	T	C	3.953e^-4	0.754	INTERGENIC
3L	15483300	3L_15483300_SNP [dm3] 3L_15490200_SNP [dm6]	A	C	3.956e^-4	0.754	INTERGENIC
X	2926734	X_2926734_SNP [dm3] X_3032701_SNP [dm6]	C	A	3.959e^-4	0.754	INTRON kirre
2R	14271079	2R_14271079_MNP [dm3] 2R_18383574_MNP [dm6]	ACA	CAG	3.968e^-4	0.754	UPSTREAM IM1 & 2 others INTERGENIC
2R	9356682	2R_9356682_SNP [dm3] 2R_13469177_SNP [dm6]	A	C	3.971e^-4	0.754	INTRON arr	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu
2R	4952865	2R_4952865_SNP [dm3] 2R_9065360_SNP [dm6]	G	A	3.972e^-4	0.754	INTRON ana	regulatory region REDfly_CRMs
2R	17930230	2R_17930230_SNP [dm3] 2R_22042725_SNP [dm6]	T	C	3.975e^-4	0.754	SYNONYMOUS_CODING PpD5
3R	22226623	3R_22226623_SNP [dm3] 3R_26400901_SNP [dm6]	A	G	3.980e^-4	0.754	INTERGENIC
2R	17028512	2R_17028512_SNP [dm3] 2R_21141007_SNP [dm6]	A	C	3.981e^-4	0.754	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	21065012	2L_21065012_SNP [dm3] 2L_21065012_SNP [dm6]	T	A	3.985e^-4	0.754	INTRON CG9265
3L	8547757	3L_8547757_SNP [dm3] 3L_8554657_SNP [dm6]	A	T	3.987e^-4	0.754	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25765336	3R_25765336_SNP [dm3] 3R_29939614_SNP [dm6]	T	C	3.988e^-4	0.754	SYNONYMOUS_CODING CG15523
2R	19408521	2R_19408521_SNP [dm3] 2R_23520998_SNP [dm6]	T	C	3.997e^-4	0.754	INTRON RabX1
X	21923143	X_21923143_SNP [dm3] X_22521307_SNP [dm6]	C	T	3.998e^-4	0.754	INTRON CG17600
X	16690567	X_16690567_SNP [dm3] X_16796534_SNP [dm6]	T	G	3.998e^-4	0.754	UTR_3_PRIME CG4768 DOWNSTREAM CG9132 & 1 other
3R	10813892	3R_10813892_SNP [dm3] 3R_14988170_SNP [dm6]	A	G	3.999e^-4	0.754	INTERGENIC
2R	16565617	2R_16565617_SNP [dm3] 2R_20678112_SNP [dm6]	C	A	4.025e^-4	0.754	INTERGENIC
2R	19735564	2R_19735564_SNP [dm3] 2R_23848041_SNP [dm6]	C	G	4.030e^-4	0.754	UTR_3_PRIME ytr	TF binding site mE1_TFBS_chinmo
X	20561531	X_20561531_SNP [dm3] X_20690504_SNP [dm6]	A	T	4.047e^-4	0.754	UPSTREAM run EXON CR45610	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	25571996	3R_25571996_SNP [dm3] 3R_29746274_SNP [dm6]	G	C	4.051e^-4	0.754	SYNONYMOUS_CODING IntS11	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18113039	3L_18113039_SNP [dm3] 3L_18119939_SNP [dm6]	C	A	4.054e^-4	0.754	SYNONYMOUS_CODING CG7341 DOWNSTREAM CG32195 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8366266	2R_8366266_SNP [dm3] 2R_12478761_SNP [dm6]	A	G	4.067e^-4	0.754	INTRON Dh44-R2
3L	411991	3L_411991_SNP [dm3] 3L_411991_SNP [dm6]	A	T	4.068e^-4	0.754	INTERGENIC
2L	9104800	2L_9104800_SNP [dm3] 2L_9104800_SNP [dm6]	C	T	4.068e^-4	0.754	INTERGENIC
2R	19484343	2R_19484343_SNP [dm3] 2R_23596820_SNP [dm6]	G	A	4.083e^-4	0.754	INTRON apt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8390929	3R_8390929_SNP [dm3] 3R_12565207_SNP [dm6]	T	C	4.088e^-4	0.754	INTRON Octbeta2R
2L	698684	2L_698684_DEL [dm3] 2L_698684_DEL [dm6]	AA	A	4.092e^-4	0.754	INTRON ds
3L	2644981	3L_2644981_SNP [dm3] 3L_2644981_SNP [dm6]	A	T	4.093e^-4	0.754	UPSTREAM CG1143 INTERGENIC
2R	13723571	2R_13723571_SNP [dm3] 2R_17836066_SNP [dm6]	A	G	4.094e^-4	0.754	INTRON grh

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.698e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.05846

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.5285	0.063
In_3R_K	4.6855	0.0961

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2137 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	2646080	3L_2646080_SNP [dm3] 3L_2646080_SNP [dm6]	C	T	1.495e^-7	0.28	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21160839	X_21160839_SNP [dm3] X_21289812_SNP [dm6]	T	C	7.260e^-7	0.531	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21160844	X_21160844_SNP [dm3] X_21289817_SNP [dm6]	G	C	8.502e^-7	0.531	INTRON CG1494	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13570329	3R_13570329_SNP [dm3] 3R_17744607_SNP [dm6]	A	C	1.456e^-6	0.654	INTRON TyrRII	TF binding site mE1_TFBS_cad
2R	9147422	2R_9147422_SNP [dm3] 2R_13259917_SNP [dm6]	A	T	1.887e^-6	0.654	UPSTREAM CG42319 INTERGENIC
2R	16289150	2R_16289150_SNP [dm3] 2R_20401645_SNP [dm6]	G	A	2.093e^-6	0.654	INTERGENIC
2R	9147438	2R_9147438_SNP [dm3] 2R_13259933_SNP [dm6]	G	A	2.811e^-6	0.687	UPSTREAM CG42319 INTERGENIC
X	21063578	X_21063578_SNP [dm3] X_21192551_SNP [dm6]	G	A	2.931e^-6	0.687	UPSTREAM CG14579 INTERGENIC
2R	9147482	2R_9147482_SNP [dm3] 2R_13259977_SNP [dm6]	A	G	3.740e^-6	0.704	UPSTREAM CG42319 INTERGENIC
2R	9147435	2R_9147435_SNP [dm3] 2R_13259930_SNP [dm6]	T	A	4.123e^-6	0.704	UPSTREAM CG42319 INTERGENIC
3L	4737896	3L_4737896_SNP [dm3] 3L_4737896_SNP [dm6]	G	A	4.129e^-6	0.704	INTRON RhoGEF64C
2R	11576547	2R_11576547_SNP [dm3] 2R_15689042_SNP [dm6]	A	G	6.155e^-6	0.714	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	2926031	X_2926031_SNP [dm3] X_3031998_SNP [dm6]	C	A	6.891e^-6	0.714	INTRON kirre
3L	4737895	3L_4737895_SNP [dm3] 3L_4737895_SNP [dm6]	A	G	6.957e^-6	0.714	INTRON RhoGEF64C
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	7.215e^-6	0.714	EXON CR44950
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	8.167e^-6	0.714	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
X	18464186	X_18464186_SNP [dm3] X_18570153_SNP [dm6]	C	A	8.880e^-6	0.714	INTRON Bx	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
3R	27128046	3R_27128046_SNP [dm3] 3R_31302324_SNP [dm6]	C	T	9.015e^-6	0.714	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_inv
3L	5886015	3L_5886015_SNP [dm3] 3L_5892915_SNP [dm6]	C	G	9.406e^-6	0.714	INTERGENIC
2R	11330036	2R_11330036_SNP [dm3] 2R_15442531_SNP [dm6]	G	C	9.744e^-6	0.714	INTRON CG43729
2R	9147155	2R_9147155_SNP [dm3] 2R_13259650_SNP [dm6]	A	T	9.917e^-6	0.714	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2R	11330161	2R_11330161_SNP [dm3] 2R_15442656_SNP [dm6]	G	A	1.047e^-5	0.714	INTRON CG43729
2R	11330066	2R_11330066_SNP [dm3] 2R_15442561_SNP [dm6]	G	T	1.151e^-5	0.714	INTRON CG43729
3L	6100247	3L_6100247_SNP [dm3] 3L_6107147_SNP [dm6]	C	T	1.198e^-5	0.714	INTRON Ets65A	TF binding site mE1_TFBS_cad
3L	6100199	3L_6100199_SNP [dm3] 3L_6107099_SNP [dm6]	C	T	1.272e^-5	0.714	INTRON Ets65A	TF binding site mE1_TFBS_cad
3R	25779128	3R_25779128_SNP [dm3] 3R_29953406_SNP [dm6]	G	A	1.277e^-5	0.714	SYNONYMOUS_CODING TkR99D
3L	3680402	3L_3680402_SNP [dm3] 3L_3680402_SNP [dm6]	T	C	1.289e^-5	0.714	INTERGENIC
X	4094020	X_4094020_SNP [dm3] X_4199987_SNP [dm6]	T	C	1.305e^-5	0.714	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	2868311	3R_2868311_INS [dm3] 3R_7042589_INS [dm6]	C	CGGA	1.320e^-5	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	2645600	3L_2645600_SNP [dm3] 3L_2645600_SNP [dm6]	A	T	1.342e^-5	0.714	INTRON CG1143	TF binding site mE1_TFBS_cad
2R	13950559	2R_13950559_SNP [dm3] 2R_18063054_SNP [dm6]	A	T	1.408e^-5	0.714	INTRON CG34386
X	2926734	X_2926734_SNP [dm3] X_3032701_SNP [dm6]	C	A	1.416e^-5	0.714	INTRON kirre
2R	11330408	2R_11330408_SNP [dm3] 2R_15442903_SNP [dm6]	C	T	1.418e^-5	0.714	INTRON CG43729
3L	8391972	3L_8391972_SNP [dm3] 3L_8398872_SNP [dm6]	A	T	1.467e^-5	0.714	INTRON CG7120
3L	14813948	3L_14813948_SNP [dm3] 3L_14820848_SNP [dm6]	G	A	1.478e^-5	0.714	INTRON CG17839
X	5115825	X_5115825_SNP [dm3] X_5221792_SNP [dm6]	A	G	1.483e^-5	0.714	INTRON CG15465 & 1 other
2L	7207197	2L_7207197_SNP [dm3] 2L_7207197_SNP [dm6]	A	G	1.588e^-5	0.714	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784	TF binding site mE1_TFBS_sens
3R	15213950	3R_15213950_SNP [dm3] 3R_19388228_SNP [dm6]	G	A	1.617e^-5	0.714	DOWNSTREAM CR34285 INTRON Ino80 & 1 other	TF binding site mE1_TFBS_sens
2L	15281202	2L_15281202_DEL [dm3] 2L_15281202_DEL [dm6]	CC	T	1.640e^-5	0.714	DOWNSTREAM CR45349 INTERGENIC
3L	7479975	3L_7479975_SNP [dm3] 3L_7486875_SNP [dm6]	T	C	1.650e^-5	0.714	SYNONYMOUS_CODING mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11327929	2R_11327929_SNP [dm3] 2R_15440424_SNP [dm6]	G	T	1.727e^-5	0.714	INTRON CG43729
2R	9147038	2R_9147038_SNP [dm3] 2R_13259533_SNP [dm6]	G	A	1.818e^-5	0.714	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
X	12850971	X_12850971_SNP [dm3] X_12956938_SNP [dm6]	G	T	1.822e^-5	0.714	INTRON hec
2R	12696827	2R_12696827_SNP [dm3] 2R_16809322_SNP [dm6]	C	A	1.869e^-5	0.714	INTERGENIC
3R	18478641	3R_18478641_SNP [dm3] 3R_22652919_SNP [dm6]	G	T	1.882e^-5	0.714	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9147009	2R_9147009_SNP [dm3] 2R_13259504_SNP [dm6]	T	G	1.908e^-5	0.714	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3L	16202369	3L_16202369_SNP [dm3] 3L_16209269_SNP [dm6]	G	A	1.920e^-5	0.714	INTERGENIC	TF binding site mE1_TFBS_cad
3R	5145048	3R_5145048_SNP [dm3] 3R_9319326_SNP [dm6]	G	A	2.024e^-5	0.714	INTRON CG8861
X	4091100	X_4091100_SNP [dm3] X_4197067_SNP [dm6]	G	C	2.053e^-5	0.714	INTRON Fas2
2R	9147010	2R_9147010_SNP [dm3] 2R_13259505_SNP [dm6]	T	G	2.068e^-5	0.714	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2R	20946369	2R_20946369_SNP [dm3] 2R_25058846_SNP [dm6]	C	T	2.220e^-5	0.714	INTERGENIC	regulatory region FlyBase REDfly_CRMs
2R	11330698	2R_11330698_SNP [dm3] 2R_15443193_SNP [dm6]	G	T	2.351e^-5	0.714	INTRON CG43729
X	5120460	X_5120460_SNP [dm3] X_5226427_SNP [dm6]	A	G	2.361e^-5	0.714	INTRON CG15465 & 1 other
3L	16202334	3L_16202334_SNP [dm3] 3L_16209234_SNP [dm6]	A	T	2.384e^-5	0.714	INTERGENIC	TF binding site mE1_TFBS_cad
2L	12260510	2L_12260510_SNP [dm3] 2L_12260510_SNP [dm6]	T	C	2.403e^-5	0.714	INTRON aret
3L	7480613	3L_7480613_SNP [dm3] 3L_7487513_SNP [dm6]	A	G	2.429e^-5	0.714	INTRON mthl6
3L	2644981	3L_2644981_SNP [dm3] 3L_2644981_SNP [dm6]	A	T	2.471e^-5	0.714	UPSTREAM CG1143 INTERGENIC
3R	26618148	3R_26618148_SNP [dm3] 3R_30792426_SNP [dm6]	T	G	2.510e^-5	0.714	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
X	4091094	X_4091094_DEL [dm3] X_4197061_DEL [dm6]	AAA	A	2.613e^-5	0.714	INTRON Fas2
2L	4512888	2L_4512888_SNP [dm3] 2L_4512888_SNP [dm6]	G	A	2.640e^-5	0.714	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11728415	3L_11728415_SNP [dm3] 3L_11735315_SNP [dm6]	C	T	2.758e^-5	0.714	UTR_3_PRIME CG6024 DOWNSTREAM CG6024
3R	12971257	3R_12971257_SNP [dm3] 3R_17145535_SNP [dm6]	A	C	2.775e^-5	0.714	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3R	12971260	3R_12971260_DEL [dm3] 3R_17145538_DEL [dm6]	AGGTAAGCATCCTA...	G	2.775e^-5	0.714	UTR_3_PRIME m-cup	TF binding site mE1_TFBS_cad
3L	16202321	3L_16202321_SNP [dm3] 3L_16209221_SNP [dm6]	G	T	2.812e^-5	0.714	INTERGENIC	TF binding site mE1_TFBS_cad
3L	712348	3L_712348_SNP [dm3] 3L_712348_SNP [dm6]	G	T	2.818e^-5	0.714	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	18418701	2R_18418701_SNP [dm3] 2R_22531196_SNP [dm6]	A	C	2.825e^-5	0.714	INTRON px
2R	18418702	2R_18418702_SNP [dm3] 2R_22531197_SNP [dm6]	C	A	2.825e^-5	0.714	INTRON px
3L	7777439	3L_7777439_SNP [dm3] 3L_7784339_SNP [dm6]	C	T	2.870e^-5	0.714	INTRON CG32369
3L	7072423	3L_7072423_SNP [dm3] 3L_7079323_SNP [dm6]	C	A	2.922e^-5	0.714	INTERGENIC
2R	9147034	2R_9147034_SNP [dm3] 2R_13259529_SNP [dm6]	G	T	3.030e^-5	0.714	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2L	12896052	2L_12896052_SNP [dm3] 2L_12896052_SNP [dm6]	T	C	3.052e^-5	0.714	INTERGENIC
3L	11599845	3L_11599845_SNP [dm3] 3L_11606745_SNP [dm6]	T	C	3.053e^-5	0.714	SYNONYMOUS_CODING CG6091
3L	8391974	3L_8391974_SNP [dm3] 3L_8398874_SNP [dm6]	G	A	3.093e^-5	0.714	INTRON CG7120
X	18463732	X_18463732_SNP [dm3] X_18569699_SNP [dm6]	A	G	3.094e^-5	0.714	INTRON Bx	TF binding site BDTNP1_TFBS_da
2R	11327910	2R_11327910_SNP [dm3] 2R_15440405_SNP [dm6]	T	C	3.134e^-5	0.714	INTRON CG43729
3R	2868309	3R_2868309_SNP [dm3] 3R_7042587_SNP [dm6]	G	A	3.148e^-5	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	5709131	3R_5709131_SNP [dm3] 3R_9883409_SNP [dm6]	C	G	3.200e^-5	0.714	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14561384	3L_14561384_SNP [dm3] 3L_14568284_SNP [dm6]	G	A	3.212e^-5	0.714	DOWNSTREAM CG42758 INTERGENIC
2L	7365708	2L_7365708_SNP [dm3] 2L_7365708_SNP [dm6]	C	T	3.284e^-5	0.714	INTRON Wnt10
3R	5137887	3R_5137887_SNP [dm3] 3R_9312165_SNP [dm6]	A	G	3.286e^-5	0.714	INTRON CG8861
3L	4534444	3L_4534444_SNP [dm3] 3L_4534444_SNP [dm6]	C	A	3.291e^-5	0.714	INTRON CG11353
X	10543785	X_10543785_SNP [dm3] X_10649752_SNP [dm6]	T	C	3.301e^-5	0.714	INTRON X11Lbeta
X	14154319	X_14154319_SNP [dm3] X_14260286_SNP [dm6]	G	C	3.307e^-5	0.714	UPSTREAM CG1461 INTERGENIC
3L	16983394	3L_16983394_SNP [dm3] 3L_16990294_SNP [dm6]	C	A	3.414e^-5	0.714	INTRON Exn
3L	14057292	3L_14057292_SNP [dm3] 3L_14064192_SNP [dm6]	C	T	3.432e^-5	0.714	INTRON CG32138	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	11330331	2R_11330331_SNP [dm3] 2R_15442826_SNP [dm6]	A	G	3.462e^-5	0.714	INTRON CG43729
3R	4400876	3R_4400876_INS [dm3] 3R_8575154_INS [dm6]	T	TT	3.492e^-5	0.714	INTERGENIC
3L	2646601	3L_2646601_SNP [dm3] 3L_2646601_SNP [dm6]	T	C	3.564e^-5	0.714	UTR_3_PRIME CG1143	TF binding site mE1_TFBS_cad
3L	14815465	3L_14815465_SNP [dm3] 3L_14822365_SNP [dm6]	G	A	3.578e^-5	0.714	INTRON CG17839
X	13136787	X_13136787_SNP [dm3] X_13242754_SNP [dm6]	C	T	3.594e^-5	0.714	INTRON mew	TF binding site BDTNP1_TFBS_da
2R	9147026	2R_9147026_SNP [dm3] 2R_13259521_SNP [dm6]	T	A	3.642e^-5	0.714	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2R	13415564	2R_13415564_SNP [dm3] 2R_17528059_SNP [dm6]	G	A	3.658e^-5	0.714	SYNONYMOUS_CODING Patronin
2R	12282058	2R_12282058_SNP [dm3] 2R_16394553_SNP [dm6]	G	A	3.691e^-5	0.714	INTRON Sema-2b
3L	6100265	3L_6100265_SNP [dm3] 3L_6107165_SNP [dm6]	C	T	3.760e^-5	0.714	INTRON Ets65A	TF binding site mE1_TFBS_cad
X	8402577	X_8402577_SNP [dm3] X_8508544_SNP [dm6]	G	A	3.773e^-5	0.714	INTRON CG33181
2L	2922161	2L_2922161_SNP [dm3] 2L_2922161_SNP [dm6]	T	A	3.797e^-5	0.714	INTRON lilli
3L	12450024	3L_12450024_SNP [dm3] 3L_12456924_SNP [dm6]	G	A	3.813e^-5	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	4737859	3L_4737859_SNP [dm3] 3L_4737859_SNP [dm6]	A	G	3.816e^-5	0.714	INTRON RhoGEF64C
3L	14555445	3L_14555445_SNP [dm3] 3L_14562345_SNP [dm6]	A	T	3.825e^-5	0.714	INTRON CG34039	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
2L	8619047	2L_8619047_SNP [dm3] 2L_8619047_SNP [dm6]	C	T	3.835e^-5	0.714	UPSTREAM tRNA:CR31602 INTRON Sema-1a
3L	8207850	3L_8207850_SNP [dm3] 3L_8214750_SNP [dm6]	T	C	3.845e^-5	0.714	UPSTREAM CG8012 INTERGENIC
3R	22141543	3R_22141543_SNP [dm3] 3R_26315821_SNP [dm6]	T	A	3.988e^-5	0.717	INTERGENIC
3R	9959340	3R_9959340_SNP [dm3] 3R_14133618_SNP [dm6]	C	T	4.077e^-5	0.717	INTERGENIC
3L	16983298	3L_16983298_INS [dm3] 3L_16990198_INS [dm6]	A	AG	4.080e^-5	0.717	INTRON Exn
X	9638379	X_9638379_SNP [dm3] X_9744346_SNP [dm6]	T	C	4.082e^-5	0.717	INTRON Sp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14689608	2L_14689608_SNP [dm3] 2L_14689608_SNP [dm6]	A	G	4.096e^-5	0.717	UPSTREAM osp INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	712385	3L_712385_DEL [dm3] 3L_712385_DEL [dm6]	TA	T	4.192e^-5	0.717	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	10435085	3R_10435085_SNP [dm3] 3R_14609363_SNP [dm6]	G	T	4.209e^-5	0.717	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	10410917	3R_10410917_SNP [dm3] 3R_14585195_SNP [dm6]	A	T	4.311e^-5	0.717	INTRON stumps	TF binding site BDTNP1_TFBS_prd
2L	21802210	2L_21802210_SNP [dm3] 2L_21802210_SNP [dm6]	G	A	4.314e^-5	0.717	INTERGENIC
X	14840917	X_14840917_SNP [dm3] X_14946884_SNP [dm6]	T	C	4.333e^-5	0.717	INTRON pdgy
3L	19472074	3L_19472074_SNP [dm3] 3L_19478974_SNP [dm6]	G	A	4.345e^-5	0.717	UPSTREAM CR32207 DOWNSTREAM CR42842 INTERGENIC
3R	25973021	3R_25973021_SNP [dm3] 3R_30147299_SNP [dm6]	T	C	4.371e^-5	0.717	INTRON AdoR
3L	2645611	3L_2645611_SNP [dm3] 3L_2645611_SNP [dm6]	C	A	4.377e^-5	0.717	INTRON CG1143	TF binding site mE1_TFBS_cad
3L	6100256	3L_6100256_SNP [dm3] 3L_6107156_SNP [dm6]	A	C	4.429e^-5	0.717	INTRON Ets65A	TF binding site mE1_TFBS_cad
3L	14815037	3L_14815037_SNP [dm3] 3L_14821937_SNP [dm6]	A	C	4.439e^-5	0.717	INTRON CG17839
3L	16202346	3L_16202346_SNP [dm3] 3L_16209246_SNP [dm6]	C	T	4.604e^-5	0.724	INTERGENIC	TF binding site mE1_TFBS_cad
3L	18575735	3L_18575735_SNP [dm3] 3L_18582635_SNP [dm6]	C	A	4.677e^-5	0.724	UPSTREAM CR45435 INTERGENIC
2R	13739800	2R_13739800_SNP [dm3] 2R_17852295_SNP [dm6]	G	T	4.754e^-5	0.724	UPSTREAM CG30323 INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	376777	2L_376777_SNP [dm3] 2L_376777_SNP [dm6]	G	A	4.811e^-5	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	13600672	3R_13600672_SNP [dm3] 3R_17774950_SNP [dm6]	C	T	4.853e^-5	0.724	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21344585	3R_21344585_SNP [dm3] 3R_25518863_SNP [dm6]	G	T	4.875e^-5	0.724	INTRON msi	TF binding site mE1_TFBS_Trl
3L	4737892	3L_4737892_SNP [dm3] 3L_4737892_SNP [dm6]	T	C	4.930e^-5	0.724	INTRON RhoGEF64C
2R	13415561	2R_13415561_SNP [dm3] 2R_17528056_SNP [dm6]	A	G	5.027e^-5	0.724	SYNONYMOUS_CODING Patronin
2R	10925619	2R_10925619_SNP [dm3] 2R_15038114_SNP [dm6]	A	G	5.059e^-5	0.724	INTRON hbs
2L	1675714	2L_1675714_SNP [dm3] 2L_1675714_SNP [dm6]	T	A	5.098e^-5	0.724	INTRON chinmo
2L	1675720	2L_1675720_SNP [dm3] 2L_1675720_SNP [dm6]	C	G	5.098e^-5	0.724	INTRON chinmo
2L	588419	2L_588419_SNP [dm3] 2L_588419_SNP [dm6]	T	A	5.119e^-5	0.724	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
3R	9823760	3R_9823760_SNP [dm3] 3R_13998038_SNP [dm6]	T	C	5.123e^-5	0.724	INTRON rdx	TF binding site mE1_TFBS_HSA
3R	26318780	3R_26318780_SNP [dm3] 3R_30493058_SNP [dm6]	C	G	5.178e^-5	0.724	SYNONYMOUS_CODING PH4alphaMP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	4341488	3R_4341488_SNP [dm3] 3R_8515766_SNP [dm6]	G	A	5.289e^-5	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	5.321e^-5	0.724	INTRON dnc
2R	14086288	2R_14086288_SNP [dm3] 2R_18198783_SNP [dm6]	A	C	5.397e^-5	0.724	INTERGENIC
3L	18663595	3L_18663595_SNP [dm3] 3L_18670495_SNP [dm6]	T	C	5.505e^-5	0.724	SYNONYMOUS_CODING Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	2645026	3L_2645026_SNP [dm3] 3L_2645026_SNP [dm6]	T	A	5.554e^-5	0.724	UPSTREAM CG1143 INTERGENIC
3R	6253276	3R_6253276_SNP [dm3] 3R_10427554_SNP [dm6]	G	A	5.562e^-5	0.724	INTERGENIC
3L	9735039	3L_9735039_SNP [dm3] 3L_9741939_SNP [dm6]	A	T	5.578e^-5	0.724	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2645067	3L_2645067_SNP [dm3] 3L_2645067_SNP [dm6]	C	T	5.619e^-5	0.724	UPSTREAM CG1143 INTERGENIC
3L	712376	3L_712376_SNP [dm3] 3L_712376_SNP [dm6]	G	A	5.623e^-5	0.724	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	17122056	2R_17122056_SNP [dm3] 2R_21234551_SNP [dm6]	C	T	5.662e^-5	0.724	INTRON ASPP
3L	2645081	3L_2645081_SNP [dm3] 3L_2645081_SNP [dm6]	A	G	5.729e^-5	0.724	UPSTREAM CG1143 INTERGENIC
2R	9147218	2R_9147218_SNP [dm3] 2R_13259713_SNP [dm6]	T	A	5.732e^-5	0.724	UPSTREAM CG42319 INTERGENIC
3L	428271	3L_428271_SNP [dm3] 3L_428271_SNP [dm6]	T	A	5.753e^-5	0.724	INTERGENIC
X	6477081	X_6477081_SNP [dm3] X_6583048_SNP [dm6]	G	T	5.761e^-5	0.724	SYNONYMOUS_CODING CG34417 INTRON CG34417
3L	14835301	3L_14835301_SNP [dm3] 3L_14842201_SNP [dm6]	T	A	5.783e^-5	0.724	INTRON CG17839
3L	712384	3L_712384_SNP [dm3] 3L_712384_SNP [dm6]	T	C	5.847e^-5	0.724	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	6100268	3L_6100268_SNP [dm3] 3L_6107168_SNP [dm6]	G	C	5.887e^-5	0.724	INTRON Ets65A	TF binding site mE1_TFBS_cad
X	12772793	X_12772793_SNP [dm3] X_12878760_SNP [dm6]	T	A	5.980e^-5	0.724	INTRON Pde9
2R	7961237	2R_7961237_SNP [dm3] 2R_12073732_SNP [dm6]	G	A	6.010e^-5	0.724	INTRON CG8888
2L	14702724	2L_14702724_SNP [dm3] 2L_14702724_SNP [dm6]	C	G	6.015e^-5	0.724	INTERGENIC
3L	712399	3L_712399_SNP [dm3] 3L_712399_SNP [dm6]	A	T	6.021e^-5	0.724	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	11251263	2R_11251263_SNP [dm3] 2R_15363758_SNP [dm6]	T	A	6.099e^-5	0.724	INTRON unc-5
3R	25799122	3R_25799122_SNP [dm3] 3R_29973400_SNP [dm6]	G	C	6.140e^-5	0.724	INTERGENIC
3L	4841343	3L_4841343_SNP [dm3] 3L_4841343_SNP [dm6]	A	C	6.161e^-5	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	11276715	3L_11276715_SNP [dm3] 3L_11283615_SNP [dm6]	A	C	6.176e^-5	0.724	INTERGENIC
3L	11276725	3L_11276725_SNP [dm3] 3L_11283625_SNP [dm6]	A	T	6.176e^-5	0.724	INTERGENIC
3L	11276731	3L_11276731_SNP [dm3] 3L_11283631_SNP [dm6]	A	G	6.183e^-5	0.724	INTERGENIC
2L	4596035	2L_4596035_SNP [dm3] 2L_4596035_SNP [dm6]	T	A	6.198e^-5	0.724	UPSTREAM dp INTRON dp	TF binding site mE1_TFBS_HSA
2L	22306203	2L_22306203_SNP [dm3] 2L_22306203_SNP [dm6]	T	C	6.227e^-5	0.724	INTERGENIC
2L	15281222	2L_15281222_SNP [dm3] 2L_15281222_SNP [dm6]	A	G	6.322e^-5	0.724	DOWNSTREAM CR45349 INTERGENIC
2L	8447278	2L_8447278_SNP [dm3] 2L_8447278_SNP [dm6]	T	G	6.386e^-5	0.724	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	2646310	3L_2646310_SNP [dm3] 3L_2646310_SNP [dm6]	T	C	6.441e^-5	0.724	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15697740	2R_15697740_SNP [dm3] 2R_19810235_SNP [dm6]	T	G	6.482e^-5	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18180957	2R_18180957_SNP [dm3] 2R_22293452_SNP [dm6]	C	T	6.501e^-5	0.724	START_GAINED CG5819 UTR_5_PRIME CG5819 INTRON CG5819
2R	16289158	2R_16289158_DEL [dm3] 2R_20401653_DEL [dm6]	CCG	C	6.531e^-5	0.724	INTERGENIC
2R	18278806	2R_18278806_SNP [dm3] 2R_22391301_SNP [dm6]	A	G	6.554e^-5	0.724	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	27100391	3R_27100391_DEL [dm3] 3R_31274669_DEL [dm6]	AA	A	6.578e^-5	0.724	INTERGENIC
3L	15693061	3L_15693061_SNP [dm3] 3L_15699961_SNP [dm6]	C	T	6.639e^-5	0.724	UPSTREAM comm2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11722638	3L_11722638_SNP [dm3] 3L_11729538_SNP [dm6]	G	A	6.660e^-5	0.724	SYNONYMOUS_CODING CG32088
3L	16202254	3L_16202254_SNP [dm3] 3L_16209154_SNP [dm6]	C	T	6.679e^-5	0.724	INTERGENIC	TF binding site mE1_TFBS_cad
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	6.738e^-5	0.724	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2279895	2L_2279895_SNP [dm3] 2L_2279895_SNP [dm6]	G	A	6.759e^-5	0.724	UPSTREAM CR43753 INTERGENIC
2L	21921535	2L_21921535_SNP [dm3] 2L_21921535_SNP [dm6]	T	C	6.822e^-5	0.724	INTERGENIC
X	6898563	X_6898563_SNP [dm3] X_7004530_SNP [dm6]	T	C	6.873e^-5	0.724	DOWNSTREAM Inx2 INTRON Inx7
3L	7480667	3L_7480667_SNP [dm3] 3L_7487567_SNP [dm6]	A	G	6.920e^-5	0.724	SYNONYMOUS_CODING mthl6
3L	4533938	3L_4533938_SNP [dm3] 3L_4533938_SNP [dm6]	A	C	6.946e^-5	0.724	INTRON CG11353
2L	8447265	2L_8447265_SNP [dm3] 2L_8447265_SNP [dm6]	A	G	6.974e^-5	0.724	NON_SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	4556696	3L_4556696_SNP [dm3] 3L_4556696_SNP [dm6]	T	A	6.992e^-5	0.724	UPSTREAM CG42540 INTRON CG42540
2L	19802428	2L_19802428_SNP [dm3] 2L_19802428_SNP [dm6]	A	G	7.066e^-5	0.724	INTRON sick
3L	4556796	3L_4556796_INS [dm3] 3L_4556796_INS [dm6]	T	TA	7.193e^-5	0.724	UPSTREAM CG42540 INTRON CG42540
X	13137037	X_13137037_SNP [dm3] X_13243004_SNP [dm6]	C	T	7.195e^-5	0.724	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	19533244	2R_19533244_SNP [dm3] 2R_23645721_SNP [dm6]	G	A	7.202e^-5	0.724	UPSTREAM retn INTRON retn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	2644985	3L_2644985_SNP [dm3] 3L_2644985_SNP [dm6]	T	A	7.247e^-5	0.724	UPSTREAM CG1143 INTERGENIC
3L	712388	3L_712388_DEL [dm3] 3L_712388_DEL [dm6]	AAT	A	7.250e^-5	0.724	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	18478605	3R_18478605_SNP [dm3] 3R_22652883_SNP [dm6]	T	A	7.255e^-5	0.724	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14341704	2R_14341704_SNP [dm3] 2R_18454199_SNP [dm6]	T	C	7.301e^-5	0.724	SYNONYMOUS_CODING CG17669	TF binding site mE1_TFBS_cad
2L	4512885	2L_4512885_SNP [dm3] 2L_4512885_SNP [dm6]	C	T	7.320e^-5	0.724	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14811233	3L_14811233_SNP [dm3] 3L_14818133_SNP [dm6]	C	T	7.333e^-5	0.724	INTRON CG17839
X	9007178	X_9007178_SNP [dm3] X_9113145_SNP [dm6]	T	A	7.464e^-5	0.724	INTRON AP-1gamma
3R	20396321	3R_20396321_SNP [dm3] 3R_24570599_SNP [dm6]	T	A	7.556e^-5	0.724	INTRON CG13624
3L	711790	3L_711790_SNP [dm3] 3L_711790_SNP [dm6]	A	T	7.575e^-5	0.724	UTR_5_PRIME CG13896	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	3437649	2L_3437649_SNP [dm3] 2L_3437649_SNP [dm6]	A	T	7.595e^-5	0.724	INTERGENIC
2L	6463898	2L_6463898_SNP [dm3] 2L_6463898_SNP [dm6]	A	T	7.605e^-5	0.724	UTR_5_PRIME CG16947	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	14817336	3L_14817336_SNP [dm3] 3L_14824236_SNP [dm6]	G	A	7.628e^-5	0.724	INTRON CG17839
3L	2646631	3L_2646631_SNP [dm3] 3L_2646631_SNP [dm6]	T	A	7.648e^-5	0.724	UTR_3_PRIME CG1143 DOWNSTREAM CG1143	TF binding site mE1_TFBS_cad
2R	8366265	2R_8366265_SNP [dm3] 2R_12478760_SNP [dm6]	A	C	7.652e^-5	0.724	INTRON Dh44-R2
3L	4152861	3L_4152861_SNP [dm3] 3L_4152861_SNP [dm6]	G	A	7.706e^-5	0.724	DOWNSTREAM CG1299 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6795339	2R_6795339_SNP [dm3] 2R_10907834_SNP [dm6]	G	T	7.716e^-5	0.724	INTERGENIC
3R	8388326	3R_8388326_SNP [dm3] 3R_12562604_SNP [dm6]	C	T	7.755e^-5	0.724	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
3L	3090995	3L_3090995_SNP [dm3] 3L_3090995_SNP [dm6]	C	T	7.799e^-5	0.724	UTR_3_PRIME Cht7 DOWNSTREAM CG11486 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	15090507	2L_15090507_SNP [dm3] 2L_15090507_SNP [dm6]	T	C	7.806e^-5	0.724	INTRON CG15270
X	13137038	X_13137038_SNP [dm3] X_13243005_SNP [dm6]	A	G	7.826e^-5	0.724	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	11339584	2R_11339584_SNP [dm3] 2R_15452079_SNP [dm6]	G	C	7.907e^-5	0.724	INTRON CG43729
2R	16340634	2R_16340634_SNP [dm3] 2R_20453129_SNP [dm6]	A	G	7.957e^-5	0.724	INTRON CG12484
2R	11576600	2R_11576600_SNP [dm3] 2R_15689095_SNP [dm6]	G	T	7.961e^-5	0.724	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13570405	3R_13570405_SNP [dm3] 3R_17744683_SNP [dm6]	A	C	7.988e^-5	0.724	INTRON TyrRII
2L	10482563	2L_10482563_SNP [dm3] 2L_10482563_SNP [dm6]	C	A	7.996e^-5	0.724	NON_SYNONYMOUS_CODING RluA-2 UTR_3_PRIME RluA-2 UPSTREAM Grip75	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	18464310	X_18464310_SNP [dm3] X_18570277_SNP [dm6]	C	T	8.044e^-5	0.725	INTRON Bx	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
3L	2646789	3L_2646789_SNP [dm3] 3L_2646789_SNP [dm6]	T	G	8.178e^-5	0.734	UTR_3_PRIME CG1143 DOWNSTREAM CG1143
3L	14813565	3L_14813565_SNP [dm3] 3L_14820465_SNP [dm6]	G	A	8.281e^-5	0.739	INTRON CG17839
2R	14678270	2R_14678270_SNP [dm3] 2R_18790765_SNP [dm6]	T	C	8.461e^-5	0.74	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16787149	2R_16787149_INS [dm3] 2R_20899644_INS [dm6]	G	GAAAACCCATTG...	8.542e^-5	0.74	INTRON otp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	4534212	3L_4534212_SNP [dm3] 3L_4534212_SNP [dm6]	G	T	8.597e^-5	0.74	INTRON CG11353
3L	11525398	3L_11525398_SNP [dm3] 3L_11532298_SNP [dm6]	C	T	8.598e^-5	0.74	INTRON Mob2
3R	14660016	3R_14660016_SNP [dm3] 3R_18834294_SNP [dm6]	G	A	8.641e^-5	0.74	INTRON CG18208
2L	7057433	2L_7057433_SNP [dm3] 2L_7057433_SNP [dm6]	C	T	8.663e^-5	0.74	SYNONYMOUS_CODING Mnn1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19317545	2R_19317545_SNP [dm3] 2R_23430022_SNP [dm6]	G	T	8.663e^-5	0.74	INTRON CG9815
3L	14817116	3L_14817116_SNP [dm3] 3L_14824016_SNP [dm6]	A	T	8.703e^-5	0.74	INTRON CG17839
3R	17353856	3R_17353856_SNP [dm3] 3R_21528134_SNP [dm6]	C	T	8.703e^-5	0.74	UTR_3_PRIME CG7956 DOWNSTREAM CG7956	TF binding site BDTNP1_TFBS_slp1
3L	18531737	3L_18531737_SNP [dm3] 3L_18538637_SNP [dm6]	A	G	8.723e^-5	0.74	INTERGENIC
3L	14813879	3L_14813879_SNP [dm3] 3L_14820779_SNP [dm6]	A	T	8.804e^-5	0.74	INTRON CG17839
2R	8372456	2R_8372456_SNP [dm3] 2R_12484951_SNP [dm6]	C	T	8.824e^-5	0.74	INTRON Dh44-R2
2L	4512900	2L_4512900_SNP [dm3] 2L_4512900_SNP [dm6]	C	T	8.834e^-5	0.74	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9778558	X_9778558_SNP [dm3] X_9884525_SNP [dm6]	T	A	8.873e^-5	0.74	SYNONYMOUS_CODING CG9691 DOWNSTREAM CG9689
2L	19742727	2L_19742727_SNP [dm3] 2L_19742727_SNP [dm6]	C	T	8.887e^-5	0.74	UPSTREAM CR44906 DOWNSTREAM CG10631 INTERGENIC
2R	11576437	2R_11576437_SNP [dm3] 2R_15688932_SNP [dm6]	T	C	8.985e^-5	0.74	NON_SYNONYMOUS_CODING Cep89 UPSTREAM CG30090	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	10785598	2L_10785598_SNP [dm3] 2L_10785598_SNP [dm6]	A	T	8.995e^-5	0.74	INTRON CG31869 EXON CR44582
3L	11722674	3L_11722674_SNP [dm3] 3L_11729574_SNP [dm6]	T	C	9.034e^-5	0.74	SYNONYMOUS_CODING CG32088
3R	4342921	3R_4342921_SNP [dm3] 3R_8517199_SNP [dm6]	C	T	9.047e^-5	0.74	UPSTREAM CG11737 INTERGENIC
3L	3910709	3L_3910709_SNP [dm3] 3L_3910709_SNP [dm6]	G	T	9.098e^-5	0.74	UTR_3_PRIME Eip63F-1 UPSTREAM mge DOWNSTREAM Eip63F-1
3L	22701905	3L_22701905_SNP [dm3] 3L_22708805_SNP [dm6]	C	A	9.122e^-5	0.74	INTERGENIC
3R	26618196	3R_26618196_SNP [dm3] 3R_30792474_SNP [dm6]	C	T	9.266e^-5	0.745	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
3L	5152409	3L_5152409_DEL [dm3] 3L_5159309_DEL [dm6]	GTG	G	9.313e^-5	0.745	UTR_3_PRIME shep
2L	20128377	2L_20128377_SNP [dm3] 2L_20128377_SNP [dm6]	C	T	9.373e^-5	0.745	INTERGENIC
X	10030942	X_10030942_SNP [dm3] X_10136909_SNP [dm6]	C	T	9.394e^-5	0.745	INTRON CR44894 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11322549	3R_11322549_SNP [dm3] 3R_15496827_SNP [dm6]	T	C	9.400e^-5	0.745	INTERGENIC
2R	12116819	2R_12116819_SNP [dm3] 2R_16229314_SNP [dm6]	A	G	9.453e^-5	0.745	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17920188	2R_17920188_DEL [dm3] 2R_22032683_DEL [dm6]	GGGCTGG	G	9.471e^-5	0.745	INTRON CG34370
3R	25759599	3R_25759599_SNP [dm3] 3R_29933877_SNP [dm6]	C	T	9.493e^-5	0.745	NON_SYNONYMOUS_CODING CG42557 START_GAINED CG42558 UTR_5_PRIME CG42558 UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7025296	2L_7025296_SNP [dm3] 2L_7025296_SNP [dm6]	C	A	9.572e^-5	0.746	NON_SYNONYMOUS_CODING CG31908	TF binding site mE1_TFBS_cad
2L	6508912	2L_6508912_SNP [dm3] 2L_6508912_SNP [dm6]	T	A	9.590e^-5	0.746	UPSTREAM CR44775 INTRON CG31637	TF binding site BDTNP1_TFBS_hb
3L	20924804	3L_20924804_SNP [dm3] 3L_20931704_SNP [dm6]	T	C	9.740e^-5	0.751	INTRON fng	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14817946	3L_14817946_SNP [dm3] 3L_14824846_SNP [dm6]	A	G	9.797e^-5	0.751	INTRON CG17839
X	16847578	X_16847578_SNP [dm3] X_16953545_SNP [dm6]	T	C	9.819e^-5	0.751	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4556835	3L_4556835_SNP [dm3] 3L_4556835_SNP [dm6]	T	C	9.862e^-5	0.751	UPSTREAM CG42540 INTRON CG42540
3L	14560642	3L_14560642_SNP [dm3] 3L_14567542_SNP [dm6]	C	A	9.900e^-5	0.751	INTRON CG42758
2L	2863927	2L_2863927_SNP [dm3] 2L_2863927_SNP [dm6]	C	T	9.922e^-5	0.751	INTRON CG2991	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8647382	3L_8647382_SNP [dm3] 3L_8654282_SNP [dm6]	T	C	9.939e^-5	0.751	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9147063	2R_9147063_SNP [dm3] 2R_13259558_SNP [dm6]	G	A	1.004e^-4	0.756	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
X	14856541	X_14856541_SNP [dm3] X_14962508_SNP [dm6]	G	A	1.008e^-4	0.756	INTRON eag
X	13504220	X_13504220_SNP [dm3] X_13610187_SNP [dm6]	T	C	1.018e^-4	0.761	SYNONYMOUS_CODING Ndc80 DOWNSTREAM CG11178	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15767069	3R_15767069_SNP [dm3] 3R_19941347_SNP [dm6]	G	A	1.023e^-4	0.761	INTRON Hs6st
3R	25765336	3R_25765336_SNP [dm3] 3R_29939614_SNP [dm6]	T	C	1.040e^-4	0.771	SYNONYMOUS_CODING CG15523
3L	711857	3L_711857_SNP [dm3] 3L_711857_SNP [dm6]	A	C	1.070e^-4	0.79	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
X	4865876	X_4865876_DEL [dm3] X_4971843_DEL [dm6]	ATATATATATATATAT...	A	1.077e^-4	0.791	INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	13570318	3R_13570318_SNP [dm3] 3R_17744596_SNP [dm6]	C	A	1.080e^-4	0.791	INTRON TyrRII	TF binding site mE1_TFBS_cad
3L	16202260	3L_16202260_SNP [dm3] 3L_16209160_SNP [dm6]	A	C	1.087e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_cad
3L	13870686	3L_13870686_SNP [dm3] 3L_13877586_SNP [dm6]	T	G	1.092e^-4	0.792	INTRON dysc
3L	712423	3L_712423_SNP [dm3] 3L_712423_SNP [dm6]	G	C	1.093e^-4	0.792	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	5129982	3R_5129982_SNP [dm3] 3R_9304260_SNP [dm6]	C	G	1.116e^-4	0.799	INTRON CG8861
3R	19357158	3R_19357158_SNP [dm3] 3R_23531436_SNP [dm6]	T	C	1.119e^-4	0.799	UPSTREAM CG10175 INTERGENIC
X	12355327	X_12355327_SNP [dm3] X_12461294_SNP [dm6]	A	G	1.125e^-4	0.799	INTRON Rab40
2L	20685197	2L_20685197_SNP [dm3] 2L_20685197_SNP [dm6]	T	C	1.125e^-4	0.799	UTR_3_PRIME Hr38
3R	14933478	3R_14933478_SNP [dm3] 3R_19107756_SNP [dm6]	T	A	1.126e^-4	0.799	INTRON CG6040
3R	15130796	3R_15130796_SNP [dm3] 3R_19305074_SNP [dm6]	G	A	1.129e^-4	0.799	SYNONYMOUS_CODING Dl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18364054	2R_18364054_SNP [dm3] 2R_22476549_SNP [dm6]	G	A	1.140e^-4	0.801	NON_SYNONYMOUS_CODING CG45063 UPSTREAM CG45062	TF binding site mE1_TFBS_cad
X	13020176	X_13020176_SNP [dm3] X_13126143_SNP [dm6]	T	C	1.140e^-4	0.801	SYNONYMOUS_CODING CG32638
X	7897466	X_7897466_SNP [dm3] X_8003433_SNP [dm6]	T	C	1.149e^-4	0.801	INTRON Tbh
X	4557427	X_4557427_SNP [dm3] X_4663394_SNP [dm6]	G	A	1.150e^-4	0.801	INTRON CG3009
3L	4556656	3L_4556656_SNP [dm3] 3L_4556656_SNP [dm6]	C	G	1.153e^-4	0.801	UPSTREAM CG42540 INTRON CG42540
X	10569471	X_10569471_SNP [dm3] X_10675438_SNP [dm6]	A	C	1.168e^-4	0.808	INTRON X11Lbeta
3R	6253307	3R_6253307_SNP [dm3] 3R_10427585_SNP [dm6]	G	T	1.182e^-4	0.809	INTERGENIC
2R	12278778	2R_12278778_SNP [dm3] 2R_16391273_SNP [dm6]	G	A	1.185e^-4	0.809	INTRON Sema-2b	TF binding site mE1_TFBS_chinmo
2R	19537420	2R_19537420_SNP [dm3] 2R_23649897_SNP [dm6]	A	T	1.194e^-4	0.809	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	588413	2L_588413_SNP [dm3] 2L_588413_SNP [dm6]	T	C	1.194e^-4	0.809	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
X	9775935	X_9775935_SNP [dm3] X_9881902_SNP [dm6]	C	T	1.202e^-4	0.809	UPSTREAM CG9689 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	7257545	3L_7257545_SNP [dm3] 3L_7264445_SNP [dm6]	T	A	1.205e^-4	0.809	UPSTREAM CG14830 INTERGENIC
3L	712377	3L_712377_SNP [dm3] 3L_712377_SNP [dm6]	A	C	1.208e^-4	0.809	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	4950454	2R_4950454_SNP [dm3] 2R_9062949_SNP [dm6]	G	A	1.211e^-4	0.809	INTRON ana	regulatory region REDfly_CRMs
3R	25435065	3R_25435065_SNP [dm3] 3R_29609343_SNP [dm6]	T	C	1.216e^-4	0.809	DOWNSTREAM Diedel2 INTRON alph
2R	6795340	2R_6795340_SNP [dm3] 2R_10907835_SNP [dm6]	A	G	1.217e^-4	0.809	INTERGENIC
3R	27127740	3R_27127740_SNP [dm3] 3R_31302018_SNP [dm6]	G	C	1.219e^-4	0.809	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	9772816	X_9772816_SNP [dm3] X_9878783_SNP [dm6]	G	T	1.222e^-4	0.809	INTRON CG1468
2R	3265898	2R_3265898_SNP [dm3] 2R_7378393_SNP [dm6]	C	A	1.232e^-4	0.81	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
2R	11530467	2R_11530467_SNP [dm3] 2R_15642962_SNP [dm6]	T	A	1.233e^-4	0.81	INTRON CG42524
3L	10264888	3L_10264888_SNP [dm3] 3L_10271788_SNP [dm6]	C	A	1.236e^-4	0.81	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24829734	3R_24829734_SNP [dm3] 3R_29004012_SNP [dm6]	A	G	1.258e^-4	0.813	INTRON wat
2L	15090500	2L_15090500_SNP [dm3] 2L_15090500_SNP [dm6]	T	A	1.265e^-4	0.813	INTRON CG15270
3L	23319297	3L_23319297_SNP [dm3] 3L_23326197_SNP [dm6]	T	G	1.272e^-4	0.813	INTRON alpha-Cat	transposable element FlyBase
3L	11791042	3L_11791042_SNP [dm3] 3L_11797942_SNP [dm6]	A	G	1.277e^-4	0.813	SYNONYMOUS_CODING Klp68D	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15263482	3R_15263482_SNP [dm3] 3R_19437760_SNP [dm6]	T	C	1.283e^-4	0.813	INTRON CG31221
3L	13241861	3L_13241861_SNP [dm3] 3L_13248761_SNP [dm6]	G	A	1.290e^-4	0.813	UPSTREAM tRNA:D2:69F & 1 other INTRON caps
2L	11686657	2L_11686657_SNP [dm3] 2L_11686657_SNP [dm6]	T	C	1.292e^-4	0.813	INTERGENIC
3R	21344893	3R_21344893_SNP [dm3] 3R_25519171_SNP [dm6]	T	A	1.292e^-4	0.813	INTRON msi
2R	8371767	2R_8371767_SNP [dm3] 2R_12484262_SNP [dm6]	T	A	1.293e^-4	0.813	INTRON Dh44-R2
X	9814806	X_9814806_DEL [dm3] X_9920773_DEL [dm6]	TT	T	1.299e^-4	0.813	INTERGENIC
3L	4556778	3L_4556778_SNP [dm3] 3L_4556778_SNP [dm6]	A	C	1.300e^-4	0.813	UPSTREAM CG42540 INTRON CG42540
3R	25125893	3R_25125893_INS [dm3] 3R_29300171_INS [dm6]	A	AA	1.308e^-4	0.813	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	25125906	3R_25125906_SNP [dm3] 3R_29300184_SNP [dm6]	A	C	1.308e^-4	0.813	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
X	2814871	X_2814871_INS [dm3] X_2920838_INS [dm6]	T	TTT	1.310e^-4	0.813	INTRON kirre & 1 other
X	2814875	X_2814875_SNP [dm3] X_2920842_SNP [dm6]	T	C	1.310e^-4	0.813	INTRON kirre & 1 other
3R	27129490	3R_27129490_SNP [dm3] 3R_31303768_SNP [dm6]	A	G	1.322e^-4	0.813	SYNONYMOUS_CODING CG11340	TF binding site mE1_TFBS_sens
3L	19448906	3L_19448906_SNP [dm3] 3L_19455806_SNP [dm6]	A	G	1.323e^-4	0.813	DOWNSTREAM CR45434 INTERGENIC
3L	2645041	3L_2645041_SNP [dm3] 3L_2645041_SNP [dm6]	G	T	1.324e^-4	0.813	UPSTREAM CG1143 INTERGENIC
X	6643082	X_6643082_INS [dm3] X_6749049_INS [dm6]	A	AACAGAGA	1.325e^-4	0.813	INTRON CG14439
2L	12527947	2L_12527947_SNP [dm3] 2L_12527947_SNP [dm6]	C	T	1.330e^-4	0.813	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15192354	2L_15192354_SNP [dm3] 2L_15192354_SNP [dm6]	C	T	1.336e^-4	0.813	INTRON CG4168
2L	589172	2L_589172_SNP [dm3] 2L_589172_SNP [dm6]	C	T	1.348e^-4	0.813	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
3R	4349280	3R_4349280_SNP [dm3] 3R_8523558_SNP [dm6]	T	C	1.356e^-4	0.813	UPSTREAM CG31259 DOWNSTREAM CG31454 INTERGENIC
3L	13310290	3L_13310290_SNP [dm3] 3L_13317190_SNP [dm6]	T	G	1.366e^-4	0.813	INTERGENIC
3L	7257559	3L_7257559_SNP [dm3] 3L_7264459_SNP [dm6]	G	A	1.368e^-4	0.813	UPSTREAM CG14830 INTERGENIC
2L	5550121	2L_5550121_SNP [dm3] 2L_5550121_SNP [dm6]	A	G	1.372e^-4	0.813	SYNONYMOUS_CODING CG14014 DOWNSTREAM Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	391184	3L_391184_SNP [dm3] 3L_391184_SNP [dm6]	C	A	1.373e^-4	0.813	DOWNSTREAM CR45378 INTRON trh
3L	3835090	3L_3835090_INS [dm3] 3L_3835090_INS [dm6]	A	AATATAACTATC...	1.385e^-4	0.813	INTRON enc
3L	7257565	3L_7257565_SNP [dm3] 3L_7264465_SNP [dm6]	C	T	1.388e^-4	0.813	UPSTREAM CG14830 INTERGENIC
3L	7480629	3L_7480629_SNP [dm3] 3L_7487529_SNP [dm6]	C	T	1.391e^-4	0.813	INTRON mthl6
3R	4340520	3R_4340520_SNP [dm3] 3R_8514798_SNP [dm6]	T	A	1.393e^-4	0.813	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	387696	2L_387696_SNP [dm3] 2L_387696_SNP [dm6]	T	A	1.394e^-4	0.813	DOWNSTREAM al INTERGENIC
3L	712235	3L_712235_SNP [dm3] 3L_712235_SNP [dm6]	C	T	1.396e^-4	0.813	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	11724908	2R_11724908_SNP [dm3] 2R_15837403_SNP [dm6]	C	T	1.398e^-4	0.813	INTRON tun	regulatory region REDfly_CRMs
X	14154365	X_14154365_DEL [dm3] X_14260332_DEL [dm6]	AA	C	1.408e^-4	0.813	UPSTREAM CG1461 INTERGENIC
X	14859243	X_14859243_SNP [dm3] X_14965210_SNP [dm6]	G	A	1.412e^-4	0.813	INTRON eag
3L	2645044	3L_2645044_SNP [dm3] 3L_2645044_SNP [dm6]	T	G	1.419e^-4	0.813	UPSTREAM CG1143 INTERGENIC
3R	5138023	3R_5138023_SNP [dm3] 3R_9312301_SNP [dm6]	T	G	1.422e^-4	0.813	INTRON CG8861	TF binding site BDTNP1_TFBS_twi
2L	19802421	2L_19802421_SNP [dm3] 2L_19802421_SNP [dm6]	A	C	1.423e^-4	0.813	INTRON sick
3R	25617852	3R_25617852_SNP [dm3] 3R_29792130_SNP [dm6]	G	C	1.428e^-4	0.813	NON_SYNONYMOUS_CODING kay	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	378373	2L_378373_SNP [dm3] 2L_378373_SNP [dm6]	A	T	1.435e^-4	0.813	UTR_5_PRIME al	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	388595	2L_388595_SNP [dm3] 2L_388595_SNP [dm6]	G	T	1.439e^-4	0.813	INTERGENIC
3L	7479886	3L_7479886_SNP [dm3] 3L_7486786_SNP [dm6]	C	T	1.442e^-4	0.813	INTRON mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2644859	3L_2644859_SNP [dm3] 3L_2644859_SNP [dm6]	C	T	1.456e^-4	0.813	UPSTREAM CG1143 INTERGENIC
3R	16890622	3R_16890622_SNP [dm3] 3R_21064900_SNP [dm6]	G	A	1.458e^-4	0.813	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
2R	9775436	2R_9775436_SNP [dm3] 2R_13887931_SNP [dm6]	G	A	1.459e^-4	0.813	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7961258	2R_7961258_SNP [dm3] 2R_12073753_SNP [dm6]	A	G	1.461e^-4	0.813	INTRON CG8888
3R	24829722	3R_24829722_SNP [dm3] 3R_29004000_SNP [dm6]	T	C	1.470e^-4	0.813	INTRON wat
2L	15281172	2L_15281172_SNP [dm3] 2L_15281172_SNP [dm6]	G	A	1.475e^-4	0.813	DOWNSTREAM CR45349 INTERGENIC
2L	2593511	2L_2593511_SNP [dm3] 2L_2593511_SNP [dm6]	G	C	1.475e^-4	0.813	DOWNSTREAM CG15394 INTERGENIC
2R	15296567	2R_15296567_SNP [dm3] 2R_19409062_SNP [dm6]	C	T	1.475e^-4	0.813	UTR_3_PRIME hts DOWNSTREAM hts INTRON hts
3L	12155898	3L_12155898_SNP [dm3] 3L_12162798_SNP [dm6]	T	C	1.479e^-4	0.813	INTRON CG9760
3L	14813646	3L_14813646_SNP [dm3] 3L_14820546_SNP [dm6]	G	A	1.485e^-4	0.813	INTRON CG17839
2L	19794789	2L_19794789_SNP [dm3] 2L_19794789_SNP [dm6]	T	A	1.489e^-4	0.813	SYNONYMOUS_CODING fs_2_ltoPP43	TF binding site BDTNP1_TFBS_dl
2R	14077068	2R_14077068_SNP [dm3] 2R_18189563_SNP [dm6]	G	A	1.509e^-4	0.813	UTR_3_PRIME CG14500 INTRON CG33958
3L	8582894	3L_8582894_SNP [dm3] 3L_8589794_SNP [dm6]	G	C	1.512e^-4	0.813	UPSTREAM CG43078 INTRON CG43078
3R	24485802	3R_24485802_SNP [dm3] 3R_28660080_SNP [dm6]	A	G	1.516e^-4	0.813	INTERGENIC
3R	13175133	3R_13175133_SNP [dm3] 3R_17349411_SNP [dm6]	A	C	1.519e^-4	0.813	INTRON beat-IIa
X	19315413	X_19315413_SNP [dm3] X_19421380_SNP [dm6]	T	G	1.521e^-4	0.813	INTRON kek5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14565106	3L_14565106_DEL [dm3] 3L_14572006_DEL [dm6]	TT	T	1.528e^-4	0.813	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7894419	3L_7894419_SNP [dm3] 3L_7901319_SNP [dm6]	T	C	1.544e^-4	0.813	SYNONYMOUS_CODING pbl INTRON pbl
X	12355297	X_12355297_SNP [dm3] X_12461264_SNP [dm6]	C	A	1.544e^-4	0.813	INTRON Rab40
3L	4373691	3L_4373691_SNP [dm3] 3L_4373691_SNP [dm6]	A	C	1.544e^-4	0.813	INTRON DopEcR
3L	12446726	3L_12446726_SNP [dm3] 3L_12453626_SNP [dm6]	A	C	1.547e^-4	0.813	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_Kr
2R	3692346	2R_3692346_SNP [dm3] 2R_7804841_SNP [dm6]	G	A	1.550e^-4	0.813	START_GAINED Nop17l UTR_5_PRIME Nop17l	TF binding site mE1_TFBS_cad
3R	4401702	3R_4401702_DEL [dm3] 3R_8575980_DEL [dm6]	GCATTTGCGGCTGATTAAAG...	G	1.553e^-4	0.813	INTERGENIC
2R	13917272	2R_13917272_SNP [dm3] 2R_18029767_SNP [dm6]	C	T	1.553e^-4	0.813	INTERGENIC
2L	4147037	2L_4147037_SNP [dm3] 2L_4147037_SNP [dm6]	A	T	1.554e^-4	0.813	INTERGENIC
3L	8547757	3L_8547757_SNP [dm3] 3L_8554657_SNP [dm6]	A	T	1.557e^-4	0.813	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	2398653	2R_2398653_SNP [dm3] 2R_6511148_SNP [dm6]	C	T	1.559e^-4	0.813	UPSTREAM CR45127 INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2L	18858630	2L_18858630_DEL [dm3] 2L_18858630_DEL [dm6]	AATCGGCGACCAT...	A	1.562e^-4	0.813	UPSTREAM CG10602 DOWNSTREAM tup INTRON CG10602 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
3L	14816170	3L_14816170_SNP [dm3] 3L_14823070_SNP [dm6]	A	T	1.563e^-4	0.813	INTRON CG17839
X	10443026	X_10443026_SNP [dm3] X_10548993_SNP [dm6]	C	T	1.566e^-4	0.813	INTRON spri
X	12795293	X_12795293_SNP [dm3] X_12901260_SNP [dm6]	C	A	1.575e^-4	0.813	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	26595100	3R_26595100_SNP [dm3] 3R_30769378_SNP [dm6]	A	G	1.577e^-4	0.813	INTRON zfh1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2669602	2L_2669602_SNP [dm3] 2L_2669602_SNP [dm6]	G	T	1.589e^-4	0.813	UPSTREAM Gr23a INTERGENIC
2L	12148371	2L_12148371_SNP [dm3] 2L_12148371_SNP [dm6]	T	A	1.590e^-4	0.813	INTRON CG31760
2L	7202010	2L_7202010_SNP [dm3] 2L_7202010_SNP [dm6]	C	T	1.597e^-4	0.813	INTRON CG4502
2L	7207266	2L_7207266_SNP [dm3] 2L_7207266_SNP [dm6]	T	A	1.597e^-4	0.813	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784
3L	7257568	3L_7257568_SNP [dm3] 3L_7264468_SNP [dm6]	G	A	1.605e^-4	0.813	UPSTREAM CG14830 INTERGENIC
3L	1103387	3L_1103387_SNP [dm3] 3L_1103387_SNP [dm6]	C	T	1.607e^-4	0.813	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	15422778	X_15422778_SNP [dm3] X_15528745_SNP [dm6]	T	A	1.607e^-4	0.813	INTRON Ac13E
2L	4624701	2L_4624701_SNP [dm3] 2L_4624701_SNP [dm6]	C	T	1.608e^-4	0.813	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14340234	2R_14340234_SNP [dm3] 2R_18452729_SNP [dm6]	T	C	1.610e^-4	0.813	UTR_3_PRIME CG5190 DOWNSTREAM CG17669	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	5557581	2L_5557581_SNP [dm3] 2L_5557581_SNP [dm6]	A	G	1.611e^-4	0.813	SPLICE_SITE_REGION GluRIIA SYNONYMOUS_CODING GluRIIA
3L	9040814	3L_9040814_SNP [dm3] 3L_9047714_SNP [dm6]	C	A	1.613e^-4	0.813	SYNONYMOUS_CODING CG5144	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sens
X	9601268	X_9601268_SNP [dm3] X_9707235_SNP [dm6]	T	A	1.619e^-4	0.814	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	15214267	3R_15214267_SNP [dm3] 3R_19388545_SNP [dm6]	A	G	1.626e^-4	0.814	SYNONYMOUS_CODING CG3734 DOWNSTREAM CR34285 INTRON Ino80	TF binding site mE1_TFBS_sens
3L	7257549	3L_7257549_SNP [dm3] 3L_7264449_SNP [dm6]	T	A	1.628e^-4	0.814	UPSTREAM CG14830 INTERGENIC
2R	6016574	2R_6016574_SNP [dm3] 2R_10129069_SNP [dm6]	G	A	1.638e^-4	0.815	INTRON gem	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	4619448	3L_4619448_SNP [dm3] 3L_4619448_SNP [dm6]	C	T	1.644e^-4	0.815	INTRON Src64B
2L	7615841	2L_7615841_SNP [dm3] 2L_7615841_SNP [dm6]	C	T	1.646e^-4	0.815	SYNONYMOUS_CODING CG6739 UTR_3_PRIME CG6739
3L	4545922	3L_4545922_SNP [dm3] 3L_4545922_SNP [dm6]	G	A	1.648e^-4	0.815	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	14561228	3L_14561228_SNP [dm3] 3L_14568128_SNP [dm6]	T	G	1.667e^-4	0.822	UTR_3_PRIME CG42758
X	16876913	X_16876913_SNP [dm3] X_16982880_SNP [dm6]	T	G	1.691e^-4	0.832	INTRON CG45002
3L	1103352	3L_1103352_INS [dm3] 3L_1103352_INS [dm6]	T	TGTAT	1.698e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	19871664	X_19871664_SNP [dm3] X_19977631_SNP [dm6]	C	G	1.706e^-4	0.834	INTERGENIC
3L	7257534	3L_7257534_SNP [dm3] 3L_7264434_SNP [dm6]	T	A	1.713e^-4	0.834	UPSTREAM CG14830 INTERGENIC
2R	10544277	2R_10544277_SNP [dm3] 2R_14656772_SNP [dm6]	C	T	1.717e^-4	0.834	DOWNSTREAM Adgf-E INTERGENIC
3L	4373692	3L_4373692_SNP [dm3] 3L_4373692_SNP [dm6]	A	C	1.722e^-4	0.834	INTRON DopEcR
2L	12923423	2L_12923423_SNP [dm3] 2L_12923423_SNP [dm6]	T	G	1.724e^-4	0.834	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
X	19421607	X_19421607_DEL [dm3] X_19527574_DEL [dm6]	CAC	C	1.737e^-4	0.834	UPSTREAM CoRest INTRON CoRest	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15355720	2L_15355720_SNP [dm3] 2L_15355720_SNP [dm6]	T	G	1.740e^-4	0.834	INTERGENIC
3R	6105593	3R_6105593_SNP [dm3] 3R_10279871_SNP [dm6]	C	T	1.740e^-4	0.834	INTRON CG43143
3L	413912	3L_413912_SNP [dm3] 3L_413912_SNP [dm6]	C	T	1.747e^-4	0.834	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	3680449	3L_3680449_SNP [dm3] 3L_3680449_SNP [dm6]	G	A	1.752e^-4	0.834	INTERGENIC	TF binding site mE1_TFBS_cad
2R	11177864	2R_11177864_SNP [dm3] 2R_15290359_SNP [dm6]	A	G	1.759e^-4	0.834	INTRON Trpm
3R	18494639	3R_18494639_SNP [dm3] 3R_22668917_SNP [dm6]	T	G	1.761e^-4	0.834	INTRON CG45058	TF binding site BDTNP1_TFBS_dl
3R	26671686	3R_26671686_SNP [dm3] 3R_30845964_SNP [dm6]	T	A	1.769e^-4	0.834	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	18730960	X_18730960_SNP [dm3] X_18836927_SNP [dm6]	A	T	1.788e^-4	0.834	INTRON Pvf1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7257564	3L_7257564_SNP [dm3] 3L_7264464_SNP [dm6]	C	T	1.788e^-4	0.834	UPSTREAM CG14830 INTERGENIC
2R	15841021	2R_15841021_SNP [dm3] 2R_19953516_SNP [dm6]	C	T	1.798e^-4	0.834	UPSTREAM CG44622 INTERGENIC
2L	10229378	2L_10229378_SNP [dm3] 2L_10229378_SNP [dm6]	T	C	1.804e^-4	0.834	INTRON CG5694
3R	3469607	3R_3469607_SNP [dm3] 3R_7643885_SNP [dm6]	C	T	1.806e^-4	0.834	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16840396	2L_16840396_SNP [dm3] 2L_16840396_SNP [dm6]	T	C	1.811e^-4	0.834	UTR_3_PRIME SclA & 1 other INTRON SclA
2R	8372590	2R_8372590_SNP [dm3] 2R_12485085_SNP [dm6]	T	C	1.811e^-4	0.834	INTRON Dh44-R2
3R	13600157	3R_13600157_SNP [dm3] 3R_17774435_SNP [dm6]	T	G	1.812e^-4	0.834	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3L	11621955	3L_11621955_DEL [dm3] 3L_11628855_DEL [dm6]	ATTA	G	1.812e^-4	0.834	UPSTREAM mir-3642 INTRON CG18815
3L	11621966	3L_11621966_DEL [dm3] 3L_11628866_DEL [dm6]	GCAAACAAAACTTACCT...	G	1.812e^-4	0.834	UPSTREAM mir-3642 INTRON CG18815
3R	13600041	3R_13600041_SNP [dm3] 3R_17774319_SNP [dm6]	C	T	1.814e^-4	0.834	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3R	17942119	3R_17942119_SNP [dm3] 3R_22116397_SNP [dm6]	G	C	1.815e^-4	0.834	NON_SYNONYMOUS_CODING Ir94b
3L	3680552	3L_3680552_SNP [dm3] 3L_3680552_SNP [dm6]	C	T	1.815e^-4	0.834	INTERGENIC	TF binding site mE1_TFBS_cad
3L	5884780	3L_5884780_SNP [dm3] 3L_5891680_SNP [dm6]	T	G	1.831e^-4	0.837	INTERGENIC
X	13828560	X_13828560_SNP [dm3] X_13934527_SNP [dm6]	C	A	1.831e^-4	0.837	INTRON mamo	TF binding site mE1_TFBS_HSA
2R	10925628	2R_10925628_SNP [dm3] 2R_15038123_SNP [dm6]	C	T	1.835e^-4	0.837	INTRON hbs
3R	21876295	3R_21876295_SNP [dm3] 3R_26050573_SNP [dm6]	T	C	1.842e^-4	0.837	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6726397	3R_6726397_SNP [dm3] 3R_10900675_SNP [dm6]	A	G	1.845e^-4	0.837	INTERGENIC
3L	13549841	3L_13549841_SNP [dm3] 3L_13556741_SNP [dm6]	A	G	1.853e^-4	0.837	INTRON bru-3
2L	13610291	2L_13610291_SNP [dm3] 2L_13610291_SNP [dm6]	C	T	1.853e^-4	0.837	NON_SYNONYMOUS_CODING kuz DOWNSTREAM mir-2489
3R	15214273	3R_15214273_SNP [dm3] 3R_19388551_SNP [dm6]	T	A	1.872e^-4	0.842	SYNONYMOUS_CODING CG3734 DOWNSTREAM CR34285 INTRON Ino80	TF binding site mE1_TFBS_sens
2R	7328313	2R_7328313_SNP [dm3] 2R_11440808_SNP [dm6]	G	A	1.882e^-4	0.842	INTRON CG7777
3L	7199896	3L_7199896_SNP [dm3] 3L_7206796_SNP [dm6]	T	G	1.885e^-4	0.842	INTERGENIC
3R	26618592	3R_26618592_SNP [dm3] 3R_30792870_SNP [dm6]	T	C	1.893e^-4	0.842	SYNONYMOUS_CODING wts	TF binding site mE1_TFBS_chinmo
3L	13880068	3L_13880068_SNP [dm3] 3L_13886968_SNP [dm6]	G	T	1.896e^-4	0.842	INTRON dysc	TF binding site mE1_TFBS_cad
2R	14678570	2R_14678570_SNP [dm3] 2R_18791065_SNP [dm6]	C	T	1.897e^-4	0.842	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13024944	3R_13024944_SNP [dm3] 3R_17199222_SNP [dm6]	T	C	1.918e^-4	0.842	INTRON Mur89F
3R	25212391	3R_25212391_SNP [dm3] 3R_29386669_SNP [dm6]	C	T	1.922e^-4	0.842	INTRON Ptp99A	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
X	15135579	X_15135579_DEL [dm3] X_15241546_DEL [dm6]	ATA	A	1.926e^-4	0.842	INTERGENIC
2L	19765108	2L_19765108_DEL [dm3] 2L_19765108_DEL [dm6]	CG	A	1.927e^-4	0.842	UPSTREAM fbp DOWNSTREAM bsh INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	9146868	2R_9146868_SNP [dm3] 2R_13259363_SNP [dm6]	C	T	1.928e^-4	0.842	UPSTREAM CG42319 DOWNSTREAM CG10799 INTERGENIC
X	9816859	X_9816859_DEL [dm3] X_9922826_DEL [dm6]	CC	C	1.929e^-4	0.842	INTERGENIC
X	14154318	X_14154318_SNP [dm3] X_14260285_SNP [dm6]	T	G	1.933e^-4	0.842	UPSTREAM CG1461 INTERGENIC
X	19871890	X_19871890_SNP [dm3] X_19977857_SNP [dm6]	C	T	1.948e^-4	0.842	INTERGENIC
2L	11686646	2L_11686646_SNP [dm3] 2L_11686646_SNP [dm6]	A	T	1.951e^-4	0.842	INTERGENIC
2R	16590709	2R_16590709_SNP [dm3] 2R_20703204_SNP [dm6]	G	A	1.952e^-4	0.842	INTRON dpr
3L	712374	3L_712374_SNP [dm3] 3L_712374_SNP [dm6]	G	C	1.957e^-4	0.842	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	14678389	2R_14678389_SNP [dm3] 2R_18790884_SNP [dm6]	C	A	1.957e^-4	0.842	NON_SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3256787	2R_3256787_SNP [dm3] 2R_7369282_SNP [dm6]	C	T	1.971e^-4	0.842	INTRON Dscam1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	17333598	2L_17333598_SNP [dm3] 2L_17333598_SNP [dm6]	G	A	1.971e^-4	0.842	INTERGENIC
3R	4932590	3R_4932590_SNP [dm3] 3R_9106868_SNP [dm6]	C	T	1.974e^-4	0.842	INTRON pum
3L	712319	3L_712319_INS [dm3] 3L_712319_INS [dm6]	C	CA	1.983e^-4	0.842	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	712342	3L_712342_SNP [dm3] 3L_712342_SNP [dm6]	A	T	1.983e^-4	0.842	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	15016163	2R_15016163_SNP [dm3] 2R_19128658_SNP [dm6]	T	A	1.984e^-4	0.842	UPSTREAM botv INTRON CG15117
2R	12696341	2R_12696341_SNP [dm3] 2R_16808836_SNP [dm6]	C	T	1.986e^-4	0.842	INTERGENIC
X	8650324	X_8650324_INS [dm3] X_8756291_INS [dm6]	T	TT	1.987e^-4	0.842	DOWNSTREAM Lim1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11459568	3R_11459568_SNP [dm3] 3R_15633846_SNP [dm6]	G	T	1.987e^-4	0.842	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	17920112	2R_17920112_SNP [dm3] 2R_22032607_SNP [dm6]	G	T	1.989e^-4	0.842	INTRON CG34370
2L	588349	2L_588349_SNP [dm3] 2L_588349_SNP [dm6]	T	C	1.993e^-4	0.842	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18531480	3R_18531480_SNP [dm3] 3R_22705758_SNP [dm6]	G	A	2.006e^-4	0.843	SPLICE_SITE_REGION CG13842 INTRON CG13842
2R	15016160	2R_15016160_SNP [dm3] 2R_19128655_SNP [dm6]	G	A	2.012e^-4	0.843	UPSTREAM botv INTRON CG15117
3R	27867697	3R_27867697_INS [dm3] 3R_32041975_INS [dm6]	CCA	AGTGGTGAGTGGC...	2.012e^-4	0.843	INTERGENIC
2L	3235270	2L_3235270_SNP [dm3] 2L_3235270_SNP [dm6]	T	C	2.016e^-4	0.843	INTERGENIC
X	19019176	X_19019176_SNP [dm3] X_19125143_SNP [dm6]	C	A	2.026e^-4	0.843	UTR_3_PRIME tgy UPSTREAM CG15882 DOWNSTREAM tgy
2R	11330070	2R_11330070_SNP [dm3] 2R_15442565_SNP [dm6]	G	A	2.027e^-4	0.843	INTRON CG43729
3L	712337	3L_712337_SNP [dm3] 3L_712337_SNP [dm6]	G	T	2.035e^-4	0.843	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	13139524	3R_13139524_SNP [dm3] 3R_17313802_SNP [dm6]	G	T	2.039e^-4	0.843	INTERGENIC
2L	3997257	2L_3997257_INS [dm3] 2L_3997257_INS [dm6]	T	TGA	2.043e^-4	0.843	INTERGENIC
2R	14271036	2R_14271036_SNP [dm3] 2R_18383531_SNP [dm6]	A	T	2.049e^-4	0.843	UPSTREAM IM1 & 1 other INTERGENIC
2L	7202015	2L_7202015_SNP [dm3] 2L_7202015_SNP [dm6]	C	A	2.050e^-4	0.843	INTRON CG4502
2R	11804667	2R_11804667_SNP [dm3] 2R_15917162_SNP [dm6]	T	G	2.051e^-4	0.843	DOWNSTREAM CR44373 INTRON sli	TF binding site mE1_TFBS_cad
X	5462305	X_5462305_INS [dm3] X_5568272_INS [dm6]	A	ACACA	2.055e^-4	0.843	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	9147036	2R_9147036_SNP [dm3] 2R_13259531_SNP [dm6]	A	T	2.070e^-4	0.847	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
2R	11849590	2R_11849590_SNP [dm3] 2R_15962085_SNP [dm6]	T	G	2.082e^-4	0.85	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2643105	3L_2643105_DEL [dm3] 3L_2643105_DEL [dm6]	TAATAT	T	2.087e^-4	0.85	INTRON CG14949
2L	648426	2L_648426_SNP [dm3] 2L_648426_SNP [dm6]	C	T	2.091e^-4	0.85	INTRON ds
3L	14835265	3L_14835265_SNP [dm3] 3L_14842165_SNP [dm6]	T	C	2.099e^-4	0.851	INTRON CG17839
2L	19798335	2L_19798335_SNP [dm3] 2L_19798335_SNP [dm6]	A	G	2.101e^-4	0.851	INTRON sick
3R	13360239	3R_13360239_INS [dm3] 3R_17534517_INS [dm6]	T	AA	2.118e^-4	0.851	UTR_5_PRIME CG5823 UPSTREAM P5cr-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
X	4537412	X_4537412_SNP [dm3] X_4643379_SNP [dm6]	C	T	2.118e^-4	0.851	INTRON CG3081 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8582618	3L_8582618_SNP [dm3] 3L_8589518_SNP [dm6]	T	C	2.134e^-4	0.851	UPSTREAM CG43078 INTRON CG43078
3R	16890626	3R_16890626_SNP [dm3] 3R_21064904_SNP [dm6]	A	T	2.139e^-4	0.851	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3R	25760016	3R_25760016_SNP [dm3] 3R_29934294_SNP [dm6]	A	C	2.144e^-4	0.851	NON_SYNONYMOUS_CODING CG42558 UTR_3_PRIME CG42557 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad
2R	15016146	2R_15016146_SNP [dm3] 2R_19128641_SNP [dm6]	T	A	2.146e^-4	0.851	UPSTREAM botv INTRON CG15117
2R	6588137	2R_6588137_SNP [dm3] 2R_10700632_SNP [dm6]	C	T	2.146e^-4	0.851	INTRON stan
3L	781261	3L_781261_SNP [dm3] 3L_781261_SNP [dm6]	G	T	2.148e^-4	0.851	INTERGENIC
2L	7000929	2L_7000929_SNP [dm3] 2L_7000929_SNP [dm6]	T	A	2.149e^-4	0.851	INTRON uif
2L	5557570	2L_5557570_SNP [dm3] 2L_5557570_SNP [dm6]	T	A	2.149e^-4	0.851	INTRON GluRIIA
X	8291487	X_8291487_SNP [dm3] X_8397454_SNP [dm6]	T	A	2.152e^-4	0.851	UTR_3_PRIME CG15345
2L	1677679	2L_1677679_SNP [dm3] 2L_1677679_SNP [dm6]	G	A	2.160e^-4	0.853	INTRON chinmo
X	19871581	X_19871581_SNP [dm3] X_19977548_SNP [dm6]	T	G	2.165e^-4	0.853	INTERGENIC
X	20262267	X_20262267_SNP [dm3] X_20391240_SNP [dm6]	A	G	2.172e^-4	0.853	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10534108	X_10534108_SNP [dm3] X_10640075_SNP [dm6]	A	G	2.178e^-4	0.853	INTRON X11Lbeta
2R	16864986	2R_16864986_SNP [dm3] 2R_20977481_SNP [dm6]	A	G	2.182e^-4	0.853	UTR_3_PRIME CG9344 DOWNSTREAM CG15650 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	7479945	3L_7479945_SNP [dm3] 3L_7486845_SNP [dm6]	T	C	2.199e^-4	0.853	SYNONYMOUS_CODING mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15384897	3R_15384897_DEL [dm3] 3R_19559175_DEL [dm6]	TT	T	2.202e^-4	0.853	INTRON Dys
3R	25776171	3R_25776171_SNP [dm3] 3R_29950449_SNP [dm6]	C	T	2.204e^-4	0.853	DOWNSTREAM TkR99D INTERGENIC
2L	19737343	2L_19737343_SNP [dm3] 2L_19737343_SNP [dm6]	G	T	2.210e^-4	0.853	DOWNSTREAM Nf-YB INTERGENIC
2L	19802446	2L_19802446_SNP [dm3] 2L_19802446_SNP [dm6]	A	G	2.215e^-4	0.853	INTRON sick
3L	781289	3L_781289_SNP [dm3] 3L_781289_SNP [dm6]	T	C	2.229e^-4	0.853	INTERGENIC
X	18430662	X_18430662_SNP [dm3] X_18536629_SNP [dm6]	G	A	2.232e^-4	0.853	INTRON Bx
2R	11855480	2R_11855480_SNP [dm3] 2R_15967975_SNP [dm6]	G	T	2.236e^-4	0.853	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
3R	15214249	3R_15214249_SNP [dm3] 3R_19388527_SNP [dm6]	C	T	2.247e^-4	0.853	SYNONYMOUS_CODING CG3734 DOWNSTREAM CR34285 INTRON Ino80	TF binding site mE1_TFBS_sens
3L	12446783	3L_12446783_SNP [dm3] 3L_12453683_SNP [dm6]	C	A	2.248e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_Kr
2R	21076580	2R_21076580_SNP [dm3] 2R_25189057_SNP [dm6]	C	T	2.253e^-4	0.853	UPSTREAM CG9380 INTRON CG9380
2L	19522029	2L_19522029_SNP [dm3] 2L_19522029_SNP [dm6]	C	T	2.254e^-4	0.853	SYNONYMOUS_CODING CG10132	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14079483	3L_14079483_DEL [dm3] 3L_14086383_DEL [dm6]	AAAGGAACTCA...	A	2.264e^-4	0.853	DOWNSTREAM CG8100 INTERGENIC
3L	7482547	3L_7482547_SNP [dm3] 3L_7489447_SNP [dm6]	C	A	2.274e^-4	0.853	INTERGENIC
3R	27129738	3R_27129738_SNP [dm3] 3R_31304016_SNP [dm6]	G	A	2.275e^-4	0.853	SYNONYMOUS_CODING CG11340
3L	18112916	3L_18112916_SNP [dm3] 3L_18119816_SNP [dm6]	A	C	2.284e^-4	0.853	UTR_5_PRIME CG7341 DOWNSTREAM CG32195	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20995023	3R_20995023_SNP [dm3] 3R_25169301_SNP [dm6]	C	G	2.286e^-4	0.853	DOWNSTREAM lobo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16866821	2R_16866821_SNP [dm3] 2R_20979316_SNP [dm6]	G	T	2.292e^-4	0.853	UTR_5_PRIME CG9313 UPSTREAM CG9313 & 1 other
2R	11671705	2R_11671705_SNP [dm3] 2R_15784200_SNP [dm6]	G	T	2.296e^-4	0.853	INTRON Zasp52	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7202011	2L_7202011_SNP [dm3] 2L_7202011_SNP [dm6]	G	A	2.306e^-4	0.853	INTRON CG4502
2R	11724086	2R_11724086_SNP [dm3] 2R_15836581_SNP [dm6]	A	G	2.312e^-4	0.853	INTRON tun	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens mE1_TFBS_Trl
X	5381199	X_5381199_SNP [dm3] X_5487166_SNP [dm6]	A	G	2.312e^-4	0.853	INTRON SPR	TF binding site mE1_TFBS_HSA
X	19401744	X_19401744_SNP [dm3] X_19507711_SNP [dm6]	T	C	2.315e^-4	0.853	SYNONYMOUS_CODING Pfrx INTRON CG14200	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7209138	2L_7209138_SNP [dm3] 2L_7209138_SNP [dm6]	A	C	2.335e^-4	0.853	INTRON CG13784
3R	18532211	3R_18532211_SNP [dm3] 3R_22706489_SNP [dm6]	A	G	2.342e^-4	0.853	SYNONYMOUS_CODING CG13842
3R	4415773	3R_4415773_SNP [dm3] 3R_8590051_SNP [dm6]	G	T	2.355e^-4	0.853	INTRON 5-HT2B	TF binding site mE1_TFBS_cad
2L	10110377	2L_10110377_SNP [dm3] 2L_10110377_SNP [dm6]	A	C	2.356e^-4	0.853	INTRON CG44153 & 1 other
X	16685557	X_16685557_SNP [dm3] X_16791524_SNP [dm6]	T	A	2.361e^-4	0.853	UPSTREAM CG4768 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	15135576	X_15135576_SNP [dm3] X_15241543_SNP [dm6]	T	G	2.361e^-4	0.853	INTERGENIC
X	3324729	X_3324729_SNP [dm3] X_3430696_SNP [dm6]	C	T	2.366e^-4	0.853	INTRON CR44999 & 1 other
2L	2707543	2L_2707543_SNP [dm3] 2L_2707543_SNP [dm6]	C	A	2.367e^-4	0.853	INTRON CG31690
3R	22518319	3R_22518319_SNP [dm3] 3R_26692597_SNP [dm6]	C	T	2.369e^-4	0.853	UTR_3_PRIME TwdlQ	TF binding site mE1_TFBS_cad
3R	26618562	3R_26618562_INS [dm3] 3R_30792840_INS [dm6]	G	GGAG	2.377e^-4	0.853	CODON_INSERTION wts	TF binding site mE1_TFBS_chinmo
2L	696649	2L_696649_SNP [dm3] 2L_696649_SNP [dm6]	T	A	2.388e^-4	0.853	INTRON ds	TF binding site mE1_TFBS_Trl
3L	743084	3L_743084_INS [dm3] 3L_743084_INS [dm6]	T	TT	2.390e^-4	0.853	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	25753160	3R_25753160_SNP [dm3] 3R_29927438_SNP [dm6]	T	C	2.392e^-4	0.853	UTR_5_PRIME CG15522
3R	13922099	3R_13922099_SNP [dm3] 3R_18096377_SNP [dm6]	G	C	2.392e^-4	0.853	SYNONYMOUS_CODING sr
3L	712455	3L_712455_SNP [dm3] 3L_712455_SNP [dm6]	C	T	2.394e^-4	0.853	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	12446661	3L_12446661_SNP [dm3] 3L_12453561_SNP [dm6]	A	G	2.395e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_Kr
2R	16864990	2R_16864990_SNP [dm3] 2R_20977485_SNP [dm6]	G	T	2.398e^-4	0.853	UTR_3_PRIME CG9344 DOWNSTREAM CG15650 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	7148303	2R_7148303_SNP [dm3] 2R_11260798_SNP [dm6]	C	G	2.403e^-4	0.853	UPSTREAM Cpr47Ec DOWNSTREAM Cpr47Ed INTERGENIC
3L	9661340	3L_9661340_SNP [dm3] 3L_9668240_SNP [dm6]	C	G	2.414e^-4	0.853	INTRON fry	TF binding site mE1_TFBS_cad
2R	6929352	2R_6929352_SNP [dm3] 2R_11041847_SNP [dm6]	A	T	2.424e^-4	0.853	INTRON luna	TF binding site mE1_TFBS_cad
2L	9487588	2L_9487588_SNP [dm3] 2L_9487588_SNP [dm6]	A	G	2.432e^-4	0.853	INTERGENIC
3R	4339924	3R_4339924_SNP [dm3] 3R_8514202_SNP [dm6]	A	G	2.455e^-4	0.853	INTERGENIC
3R	4400908	3R_4400908_SNP [dm3] 3R_8575186_SNP [dm6]	G	C	2.457e^-4	0.853	INTERGENIC
2L	1239660	2L_1239660_SNP [dm3] 2L_1239660_SNP [dm6]	G	A	2.473e^-4	0.853	UPSTREAM CG5397 INTERGENIC
3L	9716375	3L_9716375_SNP [dm3] 3L_9723275_SNP [dm6]	G	T	2.477e^-4	0.853	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7473829	3L_7473829_SNP [dm3] 3L_7480729_SNP [dm6]	C	G	2.496e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_inv
3L	11927532	3L_11927532_SNP [dm3] 3L_11934432_SNP [dm6]	G	T	2.497e^-4	0.853	SYNONYMOUS_CODING byn INTRON CG44837	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25799111	3R_25799111_SNP [dm3] 3R_29973389_SNP [dm6]	G	A	2.510e^-4	0.853	INTERGENIC
2R	15903310	2R_15903310_DEL [dm3] 2R_20015805_DEL [dm6]	TGA	T	2.511e^-4	0.853	DOWNSTREAM CR44630 INTERGENIC
3L	412023	3L_412023_SNP [dm3] 3L_412023_SNP [dm6]	G	T	2.512e^-4	0.853	INTERGENIC
2L	11686631	2L_11686631_DEL [dm3] 2L_11686631_DEL [dm6]	ATTACAGGTAATA...	T	2.516e^-4	0.853	INTERGENIC
3R	21582163	3R_21582163_SNP [dm3] 3R_25756441_SNP [dm6]	A	G	2.521e^-4	0.853	INTRON LpR1
2L	19855447	2L_19855447_SNP [dm3] 2L_19855447_SNP [dm6]	A	T	2.526e^-4	0.853	INTRON sick
3L	14816333	3L_14816333_SNP [dm3] 3L_14823233_SNP [dm6]	G	A	2.530e^-4	0.853	INTRON CG17839
2R	8366292	2R_8366292_SNP [dm3] 2R_12478787_SNP [dm6]	C	T	2.533e^-4	0.853	INTRON Dh44-R2
X	13044883	X_13044883_SNP [dm3] X_13150850_SNP [dm6]	T	G	2.533e^-4	0.853	INTRON CG32645
2L	5557577	2L_5557577_SNP [dm3] 2L_5557577_SNP [dm6]	A	T	2.535e^-4	0.853	SPLICE_SITE_REGION GluRIIA INTRON GluRIIA
3L	2687377	3L_2687377_SNP [dm3] 3L_2687377_SNP [dm6]	C	A	2.536e^-4	0.853	INTRON Fife
3L	14828782	3L_14828782_SNP [dm3] 3L_14835682_SNP [dm6]	A	C	2.538e^-4	0.853	INTRON CG17839
3L	4737951	3L_4737951_SNP [dm3] 3L_4737951_SNP [dm6]	C	A	2.539e^-4	0.853	INTRON RhoGEF64C
2R	11907181	2R_11907181_SNP [dm3] 2R_16019676_SNP [dm6]	A	G	2.545e^-4	0.853	INTRON CG8399
3R	6105638	3R_6105638_DEL [dm3] 3R_10279916_DEL [dm6]	ATGACTCCA	A	2.550e^-4	0.853	INTRON CG43143
3R	26618205	3R_26618205_SNP [dm3] 3R_30792483_SNP [dm6]	C	T	2.550e^-4	0.853	SYNONYMOUS_CODING wts UPSTREAM mir-1013	TF binding site mE1_TFBS_sens
3L	503834	3L_503834_SNP [dm3] 3L_503834_SNP [dm6]	G	C	2.552e^-4	0.853	INTRON klar
3L	4821645	3L_4821645_SNP [dm3] 3L_4821645_SNP [dm6]	C	G	2.552e^-4	0.853	INTRON Dhc64C
3L	4821647	3L_4821647_SNP [dm3] 3L_4821647_SNP [dm6]	A	G	2.552e^-4	0.853	INTRON Dhc64C
2L	19598306	2L_19598306_SNP [dm3] 2L_19598306_SNP [dm6]	A	T	2.553e^-4	0.853	INTRON Lar	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	13772991	2R_13772991_SNP [dm3] 2R_17885486_SNP [dm6]	C	T	2.553e^-4	0.853	INTRON Elk
3L	743080	3L_743080_SNP [dm3] 3L_743080_SNP [dm6]	T	A	2.557e^-4	0.853	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	19297388	2R_19297388_SNP [dm3] 2R_23409865_SNP [dm6]	A	T	2.558e^-4	0.853	INTERGENIC
3L	14832054	3L_14832054_SNP [dm3] 3L_14838954_SNP [dm6]	A	T	2.566e^-4	0.853	INTRON CG17839
3L	1408391	3L_1408391_SNP [dm3] 3L_1408391_SNP [dm6]	T	C	2.566e^-4	0.853	INTRON Ptp61F
2R	14336095	2R_14336095_SNP [dm3] 2R_18448590_SNP [dm6]	T	G	2.579e^-4	0.853	SYNONYMOUS_CODING CG30120 UTR_3_PRIME CG5189 INTRON Prp19	TF binding site mE1_TFBS_cad
3L	5145560	3L_5145560_SNP [dm3] 3L_5152460_SNP [dm6]	T	A	2.588e^-4	0.853	UPSTREAM Srp54k & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
2R	14271043	2R_14271043_DEL [dm3] 2R_18383538_DEL [dm6]	TAATGTCTTC	T	2.605e^-4	0.853	UPSTREAM IM1 & 1 other INTERGENIC
3L	14931260	3L_14931260_SNP [dm3] 3L_14938160_SNP [dm6]	G	C	2.606e^-4	0.853	INTRON DCX-EMAP
2L	21055222	2L_21055222_SNP [dm3] 2L_21055222_SNP [dm6]	A	T	2.621e^-4	0.853	NON_SYNONYMOUS_CODING Itgbetanu	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14686016	2L_14686016_SNP [dm3] 2L_14686016_SNP [dm6]	A	G	2.624e^-4	0.853	INTRON osp
3L	2645491	3L_2645491_SNP [dm3] 3L_2645491_SNP [dm6]	A	T	2.630e^-4	0.853	INTRON CG1143
3L	16896011	3L_16896011_SNP [dm3] 3L_16902911_SNP [dm6]	A	T	2.631e^-4	0.853	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo
X	6477066	X_6477066_SNP [dm3] X_6583033_SNP [dm6]	A	G	2.641e^-4	0.853	SYNONYMOUS_CODING CG34417 INTRON CG34417
3R	6253280	3R_6253280_SNP [dm3] 3R_10427558_SNP [dm6]	T	A	2.644e^-4	0.853	INTERGENIC
2R	19504761	2R_19504761_SNP [dm3] 2R_23617238_SNP [dm6]	T	C	2.651e^-4	0.853	UPSTREAM CG17664 INTERGENIC	TF binding site mE1_TFBS_sens
2L	8452388	2L_8452388_SNP [dm3] 2L_8452388_SNP [dm6]	G	T	2.658e^-4	0.853	UPSTREAM fu12 INTRON fu12
3R	10435018	3R_10435018_SNP [dm3] 3R_14609296_SNP [dm6]	T	G	2.659e^-4	0.853	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	13044852	X_13044852_SNP [dm3] X_13150819_SNP [dm6]	C	T	2.663e^-4	0.853	INTRON CG32645
2R	14271079	2R_14271079_MNP [dm3] 2R_18383574_MNP [dm6]	ACA	CAG	2.666e^-4	0.853	UPSTREAM IM1 & 2 others INTERGENIC
X	12355302	X_12355302_SNP [dm3] X_12461269_SNP [dm6]	A	G	2.675e^-4	0.853	INTRON Rab40
2L	8702856	2L_8702856_SNP [dm3] 2L_8702856_SNP [dm6]	A	T	2.678e^-4	0.853	UPSTREAM CR44992 INTRON Hnf4
3L	10756244	3L_10756244_SNP [dm3] 3L_10763144_SNP [dm6]	A	G	2.683e^-4	0.853	INTERGENIC
3R	27112061	3R_27112061_SNP [dm3] 3R_31286339_SNP [dm6]	A	C	2.687e^-4	0.853	INTERGENIC
2R	12281986	2R_12281986_SNP [dm3] 2R_16394481_SNP [dm6]	A	T	2.689e^-4	0.853	INTRON Sema-2b
2L	3832016	2L_3832016_SNP [dm3] 2L_3832016_SNP [dm6]	G	A	2.697e^-4	0.853	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE
2R	18542624	2R_18542624_SNP [dm3] 2R_22655119_SNP [dm6]	A	T	2.698e^-4	0.853	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other INTRON CG30196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19769710	3R_19769710_SNP [dm3] 3R_23943988_SNP [dm6]	G	A	2.706e^-4	0.853	SYNONYMOUS_CODING CG12268 UPSTREAM Gdh	TF binding site mE1_TFBS_cad
2R	12510094	2R_12510094_SNP [dm3] 2R_16622589_SNP [dm6]	C	T	2.707e^-4	0.853	INTRON CG5065	TF binding site mE1_TFBS_cad
2L	9430498	2L_9430498_SNP [dm3] 2L_9430498_SNP [dm6]	T	A	2.711e^-4	0.853	UPSTREAM FucTB & 1 other INTRON FucTB
X	2926643	X_2926643_SNP [dm3] X_3032610_SNP [dm6]	C	T	2.718e^-4	0.853	INTRON kirre
2L	21866518	2L_21866518_SNP [dm3] 2L_21866518_SNP [dm6]	A	G	2.719e^-4	0.853	UPSTREAM CR44917 & 1 other DOWNSTREAM CR44919 INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6788786	X_6788786_SNP [dm3] X_6894753_SNP [dm6]	A	C	2.738e^-4	0.853	INTERGENIC
X	5826894	X_5826894_INS [dm3] X_5932861_INS [dm6]	T	TT	2.742e^-4	0.853	INTRON CG3726
3R	10811112	3R_10811112_SNP [dm3] 3R_14985390_SNP [dm6]	T	C	2.745e^-4	0.853	INTERGENIC
X	15135061	X_15135061_SNP [dm3] X_15241028_SNP [dm6]	G	C	2.747e^-4	0.853	INTERGENIC
X	12795289	X_12795289_SNP [dm3] X_12901256_SNP [dm6]	G	A	2.752e^-4	0.853	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	11322522	2R_11322522_SNP [dm3] 2R_15435017_SNP [dm6]	C	A	2.766e^-4	0.853	INTRON CG43729	TF binding site mE1_TFBS_chinmo
2L	19795441	2L_19795441_SNP [dm3] 2L_19795441_SNP [dm6]	A	T	2.768e^-4	0.853	UPSTREAM sick INTRON fs_2_ltoPP43	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
X	6643040	X_6643040_SNP [dm3] X_6749007_SNP [dm6]	A	T	2.779e^-4	0.853	UPSTREAM CR44964 INTRON CG14439
2L	7100403	2L_7100403_SNP [dm3] 2L_7100403_SNP [dm6]	G	A	2.784e^-4	0.853	SYNONYMOUS_CODING Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	14805567	X_14805567_SNP [dm3] X_14911534_SNP [dm6]	T	C	2.788e^-4	0.853	UPSTREAM CG14406 DOWNSTREAM CG12398 INTRON Flo2
3L	4556798	3L_4556798_SNP [dm3] 3L_4556798_SNP [dm6]	C	A	2.789e^-4	0.853	UPSTREAM CG42540 INTRON CG42540
X	2310890	X_2310890_SNP [dm3] X_2416857_SNP [dm6]	C	G	2.790e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25841904	3R_25841904_INS [dm3] 3R_30016182_INS [dm6]	T	TTCCTTCTGGCTTCCGGCTT...	2.793e^-4	0.853	UTR_3_PRIME Mgat2 UPSTREAM CG7920	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3972263	2R_3972263_SNP [dm3] 2R_8084758_SNP [dm6]	C	A	2.795e^-4	0.853	NON_SYNONYMOUS_CODING sut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12795357	X_12795357_SNP [dm3] X_12901324_SNP [dm6]	A	C	2.801e^-4	0.853	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	25844950	3R_25844950_SNP [dm3] 3R_30019228_SNP [dm6]	G	A	2.803e^-4	0.853	SYNONYMOUS_CODING Mgat2	TF binding site mE1_TFBS_chinmo
2L	8697403	2L_8697403_SNP [dm3] 2L_8697403_SNP [dm6]	T	G	2.806e^-4	0.853	INTRON Hnf4
2R	17920187	2R_17920187_SNP [dm3] 2R_22032682_SNP [dm6]	G	T	2.808e^-4	0.853	INTRON CG34370
3L	9377935	3L_9377935_SNP [dm3] 3L_9384835_SNP [dm6]	A	G	2.808e^-4	0.853	UTR_3_PRIME Hsp27 DOWNSTREAM CR43483	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	4712167	3L_4712167_SNP [dm3] 3L_4712167_SNP [dm6]	G	A	2.810e^-4	0.853	INTRON RhoGEF64C
3L	14376180	3L_14376180_SNP [dm3] 3L_14383080_SNP [dm6]	C	T	2.816e^-4	0.853	UTR_3_PRIME CG43120
X	2926636	X_2926636_SNP [dm3] X_3032603_SNP [dm6]	T	A	2.842e^-4	0.853	INTRON kirre
3R	4339621	3R_4339621_SNP [dm3] 3R_8513899_SNP [dm6]	C	G	2.844e^-4	0.853	UPSTREAM Or85c INTERGENIC
3L	712335	3L_712335_SNP [dm3] 3L_712335_SNP [dm6]	T	A	2.849e^-4	0.853	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	21424490	3L_21424490_SNP [dm3] 3L_21431390_SNP [dm6]	A	C	2.856e^-4	0.853	SYNONYMOUS_CODING CG33288 INTRON barc	TF binding site mE1_TFBS_sens
2R	6797789	2R_6797789_SNP [dm3] 2R_10910284_SNP [dm6]	C	A	2.858e^-4	0.853	NON_SYNONYMOUS_CODING Obp47a
X	14843656	X_14843656_SNP [dm3] X_14949623_SNP [dm6]	A	T	2.862e^-4	0.853	INTRON pdgy
X	20936762	X_20936762_SNP [dm3] X_21065735_SNP [dm6]	G	A	2.867e^-4	0.853	INTRON bves & 1 other
3R	25125888	3R_25125888_SNP [dm3] 3R_29300166_SNP [dm6]	C	A	2.870e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	10518960	3L_10518960_SNP [dm3] 3L_10525860_SNP [dm6]	T	G	2.873e^-4	0.853	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13399308	2L_13399308_SNP [dm3] 2L_13399308_SNP [dm6]	T	C	2.881e^-4	0.853	NON_SYNONYMOUS_CODING CG7110 UPSTREAM CG10859 EXON CR44600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2R	19317553	2R_19317553_SNP [dm3] 2R_23430030_SNP [dm6]	C	T	2.892e^-4	0.853	INTRON CG9815
3L	14672545	3L_14672545_SNP [dm3] 3L_14679445_SNP [dm6]	T	G	2.894e^-4	0.853	INTRON ome
3L	428290	3L_428290_SNP [dm3] 3L_428290_SNP [dm6]	C	T	2.905e^-4	0.853	INTERGENIC
3R	4606495	3R_4606495_SNP [dm3] 3R_8780773_SNP [dm6]	T	C	2.910e^-4	0.853	UTR_5_PRIME CG33189 UPSTREAM CG33191 & 1 other DOWNSTREAM Pif1A INTRON Pif1B & 1 other	TF binding site mE1_TFBS_cad
X	4461691	X_4461691_SNP [dm3] X_4567658_SNP [dm6]	G	A	2.915e^-4	0.853	INTRON CR32773
2L	8807137	2L_8807137_SNP [dm3] 2L_8807137_SNP [dm6]	T	C	2.920e^-4	0.853	INTERGENIC
3R	4415784	3R_4415784_SNP [dm3] 3R_8590062_SNP [dm6]	C	T	2.922e^-4	0.853	INTRON 5-HT2B	TF binding site mE1_TFBS_cad
3R	4415796	3R_4415796_SNP [dm3] 3R_8590074_SNP [dm6]	C	A	2.922e^-4	0.853	INTRON 5-HT2B	TF binding site mE1_TFBS_cad
3L	722590	3L_722590_SNP [dm3] 3L_722590_SNP [dm6]	A	T	2.922e^-4	0.853	INTERGENIC
X	10569521	X_10569521_SNP [dm3] X_10675488_SNP [dm6]	T	A	2.924e^-4	0.853	INTRON X11Lbeta
2L	2919154	2L_2919154_SNP [dm3] 2L_2919154_SNP [dm6]	A	G	2.926e^-4	0.853	INTRON lilli
2R	14978893	2R_14978893_SNP [dm3] 2R_19091388_SNP [dm6]	C	T	2.928e^-4	0.853	SYNONYMOUS_CODING 5-HT1A
3L	2998253	3L_2998253_SNP [dm3] 3L_2998253_SNP [dm6]	A	G	2.930e^-4	0.853	INTERGENIC
X	14154449	X_14154449_SNP [dm3] X_14260416_SNP [dm6]	G	T	2.931e^-4	0.853	UPSTREAM CG1461 INTERGENIC
X	18659700	X_18659700_SNP [dm3] X_18765667_SNP [dm6]	A	T	2.933e^-4	0.853	INTRON CCKLR-17D3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4865897	X_4865897_INS [dm3] X_4971864_INS [dm6]	A	AGGACC	2.938e^-4	0.853	INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	11128197	2R_11128197_SNP [dm3] 2R_15240692_SNP [dm6]	C	T	2.944e^-4	0.853	INTRON Fs
3R	12970762	3R_12970762_SNP [dm3] 3R_17145040_SNP [dm6]	A	T	2.946e^-4	0.853	UTR_3_PRIME m-cup DOWNSTREAM m-cup
2L	4814256	2L_4814256_SNP [dm3] 2L_4814256_SNP [dm6]	A	G	2.948e^-4	0.853	INTRON CG15629
3L	11277473	3L_11277473_SNP [dm3] 3L_11284373_SNP [dm6]	G	A	2.948e^-4	0.853	UPSTREAM CR45404 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	14726419	2R_14726419_SNP [dm3] 2R_18838914_SNP [dm6]	A	G	2.951e^-4	0.853	SYNONYMOUS_CODING CG15099	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13723571	2R_13723571_SNP [dm3] 2R_17836066_SNP [dm6]	A	G	2.952e^-4	0.853	INTRON grh
2R	18798100	2R_18798100_SNP [dm3] 2R_22910577_SNP [dm6]	G	T	2.961e^-4	0.853	SYNONYMOUS_CODING nahoda
X	20215435	X_20215435_SNP [dm3] X_20344408_SNP [dm6]	G	A	2.967e^-4	0.853	INTERGENIC
2L	19841437	2L_19841437_SNP [dm3] 2L_19841437_SNP [dm6]	G	A	2.972e^-4	0.853	INTRON sick
X	22267450	X_22267450_SNP [dm3] X_22865614_SNP [dm6]	A	T	2.974e^-4	0.853	INTRON CG42346
3L	4373703	3L_4373703_SNP [dm3] 3L_4373703_SNP [dm6]	T	A	2.997e^-4	0.853	INTRON DopEcR
2R	13739728	2R_13739728_SNP [dm3] 2R_17852223_SNP [dm6]	T	C	2.998e^-4	0.853	INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	25570656	3R_25570656_SNP [dm3] 3R_29744934_SNP [dm6]	G	A	2.998e^-4	0.853	SYNONYMOUS_CODING CG7609 UPSTREAM IntS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9306338	3R_9306338_SNP [dm3] 3R_13480616_SNP [dm6]	T	A	3.003e^-4	0.853	INTERGENIC
2R	11335948	2R_11335948_SNP [dm3] 2R_15448443_SNP [dm6]	C	T	3.012e^-4	0.853	INTRON CG43729
X	3599377	X_3599377_SNP [dm3] X_3705344_SNP [dm6]	G	T	3.013e^-4	0.853	UTR_3_PRIME Rala
3R	24357321	3R_24357321_SNP [dm3] 3R_28531599_SNP [dm6]	T	A	3.019e^-4	0.853	INTRON Ppn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	1564489	3L_1564489_SNP [dm3] 3L_1564489_SNP [dm6]	A	G	3.020e^-4	0.853	UPSTREAM CG12003 INTRON CG7879
2L	19753855	2L_19753855_SNP [dm3] 2L_19753855_SNP [dm6]	C	G	3.026e^-4	0.853	SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6017234	2R_6017234_SNP [dm3] 2R_10129729_SNP [dm6]	T	C	3.036e^-4	0.853	INTRON gem
3R	10573746	3R_10573746_SNP [dm3] 3R_14748024_SNP [dm6]	A	G	3.040e^-4	0.853	UPSTREAM smp-30 INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
X	12795292	X_12795292_SNP [dm3] X_12901259_SNP [dm6]	T	C	3.040e^-4	0.853	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	8956566	X_8956566_SNP [dm3] X_9062533_SNP [dm6]	T	A	3.047e^-4	0.853	INTRON CG15365
3R	6105532	3R_6105532_SNP [dm3] 3R_10279810_SNP [dm6]	C	T	3.047e^-4	0.853	INTRON CG43143
3L	11632796	3L_11632796_SNP [dm3] 3L_11639696_SNP [dm6]	G	T	3.048e^-4	0.853	INTRON CG32091
2R	16998506	2R_16998506_SNP [dm3] 2R_21111001_SNP [dm6]	A	G	3.049e^-4	0.853	INTRON ktub
3L	712226	3L_712226_SNP [dm3] 3L_712226_SNP [dm6]	C	A	3.050e^-4	0.853	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	21990412	3R_21990412_SNP [dm3] 3R_26164690_SNP [dm6]	G	C	3.050e^-4	0.853	INTERGENIC
3R	26618541	3R_26618541_SNP [dm3] 3R_30792819_SNP [dm6]	A	G	3.052e^-4	0.853	SYNONYMOUS_CODING wts	TF binding site mE1_TFBS_chinmo
3L	2683655	3L_2683655_SNP [dm3] 3L_2683655_SNP [dm6]	A	G	3.053e^-4	0.853	INTRON Fife
3L	13990762	3L_13990762_SNP [dm3] 3L_13997662_SNP [dm6]	G	A	3.068e^-4	0.853	NON_SYNONYMOUS_CODING CG17361 DOWNSTREAM CG17359	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14845226	X_14845226_SNP [dm3] X_14951193_SNP [dm6]	T	C	3.070e^-4	0.853	UTR_5_PRIME pdgy UPSTREAM pdgy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	15090517	2L_15090517_SNP [dm3] 2L_15090517_SNP [dm6]	A	G	3.079e^-4	0.853	INTRON CG15270
3L	1167757	3L_1167757_SNP [dm3] 3L_1167757_SNP [dm6]	C	T	3.083e^-4	0.853	INTRON bab2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8370140	2L_8370140_SNP [dm3] 2L_8370140_SNP [dm6]	C	T	3.087e^-4	0.853	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
2L	588293	2L_588293_SNP [dm3] 2L_588293_SNP [dm6]	G	T	3.087e^-4	0.853	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25351984	3R_25351984_SNP [dm3] 3R_29526262_SNP [dm6]	A	G	3.109e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_inv
3L	11168307	3L_11168307_SNP [dm3] 3L_11175207_SNP [dm6]	T	A	3.111e^-4	0.853	INTRON CG14142
3L	14813812	3L_14813812_SNP [dm3] 3L_14820712_SNP [dm6]	C	A	3.123e^-4	0.853	INTRON CG17839
X	20561606	X_20561606_SNP [dm3] X_20690579_SNP [dm6]	C	T	3.126e^-4	0.853	UPSTREAM run EXON CR45610	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	14842540	X_14842540_SNP [dm3] X_14948507_SNP [dm6]	T	C	3.135e^-4	0.853	INTRON pdgy	TF binding site mE1_TFBS_HSA
3L	4416371	3L_4416371_SNP [dm3] 3L_4416371_SNP [dm6]	G	A	3.136e^-4	0.853	INTRON DOR
X	9915703	X_9915703_SNP [dm3] X_10021670_SNP [dm6]	G	T	3.157e^-4	0.853	INTRON Cht6
3R	6105689	3R_6105689_SNP [dm3] 3R_10279967_SNP [dm6]	G	A	3.158e^-4	0.853	INTRON CG43143
3R	18480610	3R_18480610_SNP [dm3] 3R_22654888_SNP [dm6]	T	C	3.165e^-4	0.853	INTRON CG45058
X	1196886	X_1196886_SNP [dm3] X_1302853_SNP [dm6]	T	C	3.174e^-4	0.853	INTRON DAAM	TF binding site mE1_TFBS_chinmo
X	4093930	X_4093930_SNP [dm3] X_4199897_SNP [dm6]	T	C	3.188e^-4	0.853	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	24427748	3R_24427748_SNP [dm3] 3R_28602026_SNP [dm6]	A	T	3.202e^-4	0.853	UPSTREAM snoRNA:Psi28S-3405c & 2 others DOWNSTREAM snoRNA:Psi28S-3405a & 2 others INTRON Hrb98DE
3R	21341350	3R_21341350_SNP [dm3] 3R_25515628_SNP [dm6]	G	T	3.202e^-4	0.853	UPSTREAM msi INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	15903314	2R_15903314_SNP [dm3] 2R_20015809_SNP [dm6]	A	C	3.207e^-4	0.853	DOWNSTREAM CR44630 INTERGENIC
3L	14385310	3L_14385310_INS [dm3] 3L_14392210_INS [dm6]	T	TGCTCTTAA	3.230e^-4	0.853	INTERGENIC
X	11103011	X_11103011_SNP [dm3] X_11208978_SNP [dm6]	A	T	3.238e^-4	0.853	INTERGENIC
3L	16824644	3L_16824644_SNP [dm3] 3L_16831544_SNP [dm6]	A	G	3.239e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_inv
2R	8366266	2R_8366266_SNP [dm3] 2R_12478761_SNP [dm6]	A	G	3.244e^-4	0.853	INTRON Dh44-R2
3R	24412419	3R_24412419_SNP [dm3] 3R_28586697_SNP [dm6]	G	A	3.246e^-4	0.853	EXON MRE23	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
3R	20551315	3R_20551315_DEL [dm3] 3R_24725593_DEL [dm6]	CA	C	3.249e^-4	0.853	INTRON tok	TF binding site BDTNP1_TFBS_dl
2R	19504908	2R_19504908_SNP [dm3] 2R_23617385_SNP [dm6]	A	G	3.261e^-4	0.853	UPSTREAM CG17664 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14452456	2R_14452456_SNP [dm3] 2R_18564951_SNP [dm6]	G	A	3.277e^-4	0.853	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24789470	3R_24789470_SNP [dm3] 3R_28963748_SNP [dm6]	C	A	3.280e^-4	0.853	INTRON CG14521
X	19871242	X_19871242_SNP [dm3] X_19977209_SNP [dm6]	A	G	3.281e^-4	0.853	INTERGENIC
3R	18780271	3R_18780271_SNP [dm3] 3R_22954549_SNP [dm6]	G	A	3.285e^-4	0.853	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	6588083	2R_6588083_SNP [dm3] 2R_10700578_SNP [dm6]	G	C	3.286e^-4	0.853	INTRON stan
2L	14246210	2L_14246210_SNP [dm3] 2L_14246210_SNP [dm6]	C	T	3.286e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	11481430	2R_11481430_SNP [dm3] 2R_15593925_SNP [dm6]	T	C	3.300e^-4	0.853	INTERGENIC
3R	2260500	3R_2260500_SNP [dm3] 3R_6434778_SNP [dm6]	C	T	3.306e^-4	0.853	INTRON gpp
2R	6588312	2R_6588312_SNP [dm3] 2R_10700807_SNP [dm6]	G	C	3.314e^-4	0.853	INTRON stan
2R	12392713	2R_12392713_SNP [dm3] 2R_16505208_SNP [dm6]	G	A	3.315e^-4	0.853	INTRON Sema-2a
3R	5963561	3R_5963561_SNP [dm3] 3R_10137839_SNP [dm6]	T	C	3.316e^-4	0.853	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	14678243	2R_14678243_SNP [dm3] 2R_18790738_SNP [dm6]	A	T	3.323e^-4	0.853	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18113039	3L_18113039_SNP [dm3] 3L_18119939_SNP [dm6]	C	A	3.324e^-4	0.853	SYNONYMOUS_CODING CG7341 DOWNSTREAM CG32195 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15906467	2R_15906467_SNP [dm3] 2R_20018962_SNP [dm6]	T	C	3.342e^-4	0.853	INTERGENIC
X	5256720	X_5256720_SNP [dm3] X_5362687_SNP [dm6]	C	T	3.343e^-4	0.853	INTRON SK
2R	15733645	2R_15733645_SNP [dm3] 2R_19846140_SNP [dm6]	C	G	3.344e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	13310271	3L_13310271_SNP [dm3] 3L_13317171_SNP [dm6]	C	T	3.366e^-4	0.853	INTERGENIC
3L	712323	3L_712323_SNP [dm3] 3L_712323_SNP [dm6]	T	A	3.372e^-4	0.853	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	16864219	2R_16864219_SNP [dm3] 2R_20976714_SNP [dm6]	G	A	3.373e^-4	0.853	UPSTREAM CG9344 DOWNSTREAM CG15650 INTRON CG34115	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	2863631	2L_2863631_SNP [dm3] 2L_2863631_SNP [dm6]	G	T	3.375e^-4	0.853	INTRON CG2991	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11328034	2R_11328034_SNP [dm3] 2R_15440529_SNP [dm6]	T	A	3.378e^-4	0.853	INTRON CG43729
3R	25351951	3R_25351951_SNP [dm3] 3R_29526229_SNP [dm6]	C	A	3.381e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_inv
3L	16325160	3L_16325160_SNP [dm3] 3L_16332060_SNP [dm6]	G	A	3.383e^-4	0.853	NON_SYNONYMOUS_CODING retinin DOWNSTREAM CG33061 & 1 other	TF binding site mE1_TFBS_cad
3R	4930963	3R_4930963_SNP [dm3] 3R_9105241_SNP [dm6]	T	C	3.387e^-4	0.853	INTRON pum
3R	4025613	3R_4025613_SNP [dm3] 3R_8199891_SNP [dm6]	C	A	3.389e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2L	10636889	2L_10636889_SNP [dm3] 2L_10636889_SNP [dm6]	C	T	3.389e^-4	0.853	INTRON CG7329
2L	11849869	2L_11849869_DEL [dm3] 2L_11849869_DEL [dm6]	TTTTA	G	3.395e^-4	0.853	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
3R	25842576	3R_25842576_SNP [dm3] 3R_30016854_SNP [dm6]	G	A	3.403e^-4	0.853	SYNONYMOUS_CODING Mgat2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20945993	2R_20945993_SNP [dm3] 2R_25058470_SNP [dm6]	A	G	3.419e^-4	0.853	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_prd
X	14859049	X_14859049_INS [dm3] X_14965016_INS [dm6]	C	CTATAAATTTGC...	3.427e^-4	0.853	INTRON eag
2L	19802424	2L_19802424_SNP [dm3] 2L_19802424_SNP [dm6]	A	T	3.427e^-4	0.853	INTRON sick
2R	11648030	2R_11648030_SNP [dm3] 2R_15760525_SNP [dm6]	A	T	3.428e^-4	0.853	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	17259658	X_17259658_SNP [dm3] X_17365625_SNP [dm6]	T	C	3.432e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	7157527	2R_7157527_SNP [dm3] 2R_11270022_SNP [dm6]	A	G	3.447e^-4	0.853	SYNONYMOUS_CODING Cpr47Ef	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4164481	3L_4164481_SNP [dm3] 3L_4164481_SNP [dm6]	A	T	3.448e^-4	0.853	SYNONYMOUS_CODING mas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	13258148	X_13258148_SNP [dm3] X_13364115_SNP [dm6]	A	G	3.451e^-4	0.853	NON_SYNONYMOUS_CODING Syt12	TF binding site BDTNP1_TFBS_sna
2R	19297196	2R_19297196_SNP [dm3] 2R_23409673_SNP [dm6]	C	G	3.455e^-4	0.853	INTERGENIC
2R	11722955	2R_11722955_SNP [dm3] 2R_15835450_SNP [dm6]	G	A	3.461e^-4	0.853	UPSTREAM Poxn INTRON tun	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
X	14756883	X_14756883_SNP [dm3] X_14862850_SNP [dm6]	C	T	3.462e^-4	0.853	DOWNSTREAM CG9518 INTRON Flo2
X	7897437	X_7897437_SNP [dm3] X_8003404_SNP [dm6]	T	G	3.463e^-4	0.853	INTRON Tbh
X	6249631	X_6249631_SNP [dm3] X_6355598_SNP [dm6]	T	G	3.467e^-4	0.853	INTRON kdn
3L	11276693	3L_11276693_SNP [dm3] 3L_11283593_SNP [dm6]	A	G	3.472e^-4	0.853	INTERGENIC
2L	7615825	2L_7615825_SNP [dm3] 2L_7615825_SNP [dm6]	C	A	3.478e^-4	0.853	NON_SYNONYMOUS_CODING CG6739 UTR_3_PRIME CG6739
3R	19217624	3R_19217624_SNP [dm3] 3R_23391902_SNP [dm6]	G	A	3.478e^-4	0.853	INTERGENIC
2R	14339348	2R_14339348_SNP [dm3] 2R_18451843_SNP [dm6]	C	T	3.482e^-4	0.853	SYNONYMOUS_CODING CG5190 UPSTREAM Prp19 DOWNSTREAM CG17669	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6105630	3R_6105630_SNP [dm3] 3R_10279908_SNP [dm6]	T	A	3.482e^-4	0.853	INTRON CG43143
3L	14561388	3L_14561388_SNP [dm3] 3L_14568288_SNP [dm6]	A	G	3.486e^-4	0.853	DOWNSTREAM CG42758 INTERGENIC
X	21458725	X_21458725_SNP [dm3] X_21587698_SNP [dm6]	T	C	3.488e^-4	0.853	INTERGENIC
X	13265005	X_13265005_SNP [dm3] X_13370972_SNP [dm6]	G	A	3.493e^-4	0.853	UPSTREAM CG1640 DOWNSTREAM dmrt11E INTRON CG1640	TF binding site BDTNP1_TFBS_dl
2R	19024849	2R_19024849_SNP [dm3] 2R_23137326_SNP [dm6]	T	G	3.504e^-4	0.853	INTERGENIC
X	14842079	X_14842079_DEL [dm3] X_14948046_DEL [dm6]	AAAAGCAACA	A	3.505e^-4	0.853	INTRON pdgy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4091081	X_4091081_DEL [dm3] X_4197048_DEL [dm6]	TTT	T	3.516e^-4	0.853	INTRON Fas2
3L	14809022	3L_14809022_SNP [dm3] 3L_14815922_SNP [dm6]	A	T	3.525e^-4	0.853	INTRON CG17839
3R	18478631	3R_18478631_SNP [dm3] 3R_22652909_SNP [dm6]	C	A	3.528e^-4	0.853	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	7613947	X_7613947_SNP [dm3] X_7719914_SNP [dm6]	C	T	3.535e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14829716	X_14829716_SNP [dm3] X_14935683_SNP [dm6]	G	A	3.535e^-4	0.853	INTRON pdgy
3L	17193388	3L_17193388_SNP [dm3] 3L_17200288_SNP [dm6]	T	A	3.537e^-4	0.853	INTRON Rbp6
2R	13195840	2R_13195840_SNP [dm3] 2R_17308335_SNP [dm6]	G	T	3.539e^-4	0.853	INTRON mbl
X	8402755	X_8402755_SNP [dm3] X_8508722_SNP [dm6]	G	C	3.547e^-4	0.853	UPSTREAM CG33181 INTRON CG33181
X	8042792	X_8042792_SNP [dm3] X_8148759_SNP [dm6]	G	A	3.555e^-4	0.853	UPSTREAM CG10959 DOWNSTREAM CG2129 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	12568589	3L_12568589_SNP [dm3] 3L_12575489_SNP [dm6]	G	T	3.557e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12451606	3L_12451606_SNP [dm3] 3L_12458506_SNP [dm6]	G	A	3.561e^-4	0.853	INTERGENIC
2L	11930045	2L_11930045_SNP [dm3] 2L_11930045_SNP [dm6]	C	T	3.571e^-4	0.853	INTERGENIC
2R	11598183	2R_11598183_SNP [dm3] 2R_15710678_SNP [dm6]	A	G	3.572e^-4	0.853	DOWNSTREAM CG30083 INTERGENIC
2L	11849740	2L_11849740_SNP [dm3] 2L_11849740_SNP [dm6]	A	G	3.576e^-4	0.853	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
3L	428289	3L_428289_SNP [dm3] 3L_428289_SNP [dm6]	T	A	3.579e^-4	0.853	INTERGENIC
3R	12898355	3R_12898355_SNP [dm3] 3R_17072633_SNP [dm6]	A	G	3.582e^-4	0.853	UTR_5_PRIME Ns1 UPSTREAM mRpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17030654	2R_17030654_SNP [dm3] 2R_21143149_SNP [dm6]	A	C	3.585e^-4	0.853	SYNONYMOUS_CODING CG9406 UPSTREAM Magi & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	24829701	3R_24829701_SNP [dm3] 3R_29003979_SNP [dm6]	C	G	3.586e^-4	0.853	INTRON wat
3L	14814091	3L_14814091_SNP [dm3] 3L_14820991_SNP [dm6]	G	A	3.589e^-4	0.853	INTRON CG17839
3L	14814092	3L_14814092_SNP [dm3] 3L_14820992_SNP [dm6]	T	A	3.589e^-4	0.853	INTRON CG17839
3R	2867864	3R_2867864_SNP [dm3] 3R_7042142_SNP [dm6]	A	C	3.598e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7156753	3L_7156753_SNP [dm3] 3L_7163653_SNP [dm6]	G	A	3.598e^-4	0.853	INTRON Dscam2
3L	7156769	3L_7156769_SNP [dm3] 3L_7163669_SNP [dm6]	G	A	3.598e^-4	0.853	INTRON Dscam2
2R	15459606	2R_15459606_SNP [dm3] 2R_19572101_SNP [dm6]	T	G	3.606e^-4	0.853	INTRON sm
2R	16864005	2R_16864005_SNP [dm3] 2R_20976500_SNP [dm6]	A	T	3.606e^-4	0.853	UPSTREAM CG9344 INTRON CG34115	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	19315420	X_19315420_DEL [dm3] X_19421387_DEL [dm6]	CATACATATATGTGT...	C	3.621e^-4	0.853	INTRON kek5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26700759	3R_26700759_SNP [dm3] 3R_30875037_SNP [dm6]	G	C	3.621e^-4	0.853	SYNONYMOUS_CODING CG15546	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	11945085	X_11945085_SNP [dm3] X_12051052_SNP [dm6]	A	T	3.623e^-4	0.853	INTRON CR43960 & 1 other
2R	14452462	2R_14452462_SNP [dm3] 2R_18564957_SNP [dm6]	A	C	3.629e^-4	0.853	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	712501	3L_712501_SNP [dm3] 3L_712501_SNP [dm6]	C	G	3.630e^-4	0.853	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	742989	3L_742989_SNP [dm3] 3L_742989_SNP [dm6]	C	A	3.646e^-4	0.853	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	12976309	2R_12976309_SNP [dm3] 2R_17088804_SNP [dm6]	T	G	3.650e^-4	0.853	SYNONYMOUS_CODING Sply
2R	8134266	2R_8134266_SNP [dm3] 2R_12246761_SNP [dm6]	C	T	3.656e^-4	0.853	EXON CR44315
3L	16354111	3L_16354111_SNP [dm3] 3L_16361011_SNP [dm6]	T	G	3.658e^-4	0.853	INTRON CG45057
X	3377694	X_3377694_SNP [dm3] X_3483661_SNP [dm6]	G	A	3.658e^-4	0.853	SYNONYMOUS_CODING CG10802 DOWNSTREAM CG14270 INTRON CR44999	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	11330187	2R_11330187_SNP [dm3] 2R_15442682_SNP [dm6]	A	G	3.659e^-4	0.853	INTRON CG43729
X	13934374	X_13934374_SNP [dm3] X_14040341_SNP [dm6]	C	T	3.661e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17953623	3R_17953623_SNP [dm3] 3R_22127901_SNP [dm6]	T	C	3.664e^-4	0.853	INTRON CG42390
3R	18780272	3R_18780272_SNP [dm3] 3R_22954550_SNP [dm6]	A	G	3.664e^-4	0.853	INTRON klg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	25759471	3R_25759471_SNP [dm3] 3R_29933749_SNP [dm6]	T	A	3.665e^-4	0.853	SYNONYMOUS_CODING CG42557 UTR_5_PRIME CG42558 UPSTREAM Cog7 DOWNSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15192404	2L_15192404_SNP [dm3] 2L_15192404_SNP [dm6]	G	A	3.677e^-4	0.853	INTRON CG4168
2L	1136458	2L_1136458_SNP [dm3] 2L_1136458_SNP [dm6]	T	G	3.680e^-4	0.853	INTRON CG4577
X	3287601	X_3287601_SNP [dm3] X_3393568_SNP [dm6]	A	T	3.682e^-4	0.853	INTRON CR44999 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4159131	3L_4159131_DEL [dm3] 3L_4159131_DEL [dm6]	GG	G	3.686e^-4	0.853	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	18662988	3L_18662988_INS [dm3] 3L_18669888_INS [dm6]	G	GCTG	3.690e^-4	0.853	CODON_INSERTION Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
X	20557845	X_20557845_SNP [dm3] X_20686818_SNP [dm6]	T	C	3.691e^-4	0.853	UPSTREAM CR43862 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_Trl
2L	18932869	2L_18932869_INS [dm3] 2L_18932869_INS [dm6]	T	TT	3.691e^-4	0.853	INTRON ssp3
3R	16890386	3R_16890386_SNP [dm3] 3R_21064664_SNP [dm6]	A	G	3.698e^-4	0.853	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
X	16848592	X_16848592_SNP [dm3] X_16954559_SNP [dm6]	A	G	3.699e^-4	0.853	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15100187	2R_15100187_SNP [dm3] 2R_19212682_SNP [dm6]	C	T	3.705e^-4	0.853	INTRON hppy	TF binding site mE1_TFBS_inv
X	13934383	X_13934383_DEL [dm3] X_14040350_DEL [dm6]	TT	T	3.708e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6601300	2L_6601300_SNP [dm3] 2L_6601300_SNP [dm6]	T	A	3.709e^-4	0.853	UPSTREAM CG11319 INTERGENIC
X	12795347	X_12795347_SNP [dm3] X_12901314_SNP [dm6]	A	T	3.713e^-4	0.853	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	12080176	3R_12080176_SNP [dm3] 3R_16254454_SNP [dm6]	G	C	3.735e^-4	0.853	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	3547796	3L_3547796_SNP [dm3] 3L_3547796_SNP [dm6]	T	A	3.738e^-4	0.853	INTRON Eip63E
3L	5884782	3L_5884782_SNP [dm3] 3L_5891682_SNP [dm6]	G	T	3.745e^-4	0.853	INTERGENIC
3R	25765280	3R_25765280_SNP [dm3] 3R_29939558_SNP [dm6]	T	A	3.747e^-4	0.853	NON_SYNONYMOUS_CODING CG15523
3L	12176805	3L_12176805_SNP [dm3] 3L_12183705_SNP [dm6]	T	C	3.749e^-4	0.853	DOWNSTREAM CAH2 INTERGENIC
2R	19504762	2R_19504762_SNP [dm3] 2R_23617239_SNP [dm6]	G	A	3.751e^-4	0.853	UPSTREAM CG17664 INTERGENIC	TF binding site mE1_TFBS_sens
2L	9463956	2L_9463956_SNP [dm3] 2L_9463956_SNP [dm6]	C	A	3.761e^-4	0.853	UTR_3_PRIME numb DOWNSTREAM numb
X	14841983	X_14841983_SNP [dm3] X_14947950_SNP [dm6]	A	G	3.764e^-4	0.853	INTRON pdgy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20935015	2R_20935015_SNP [dm3] 2R_25047492_SNP [dm6]	C	G	3.764e^-4	0.853	INTRON gsb-n	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
3L	4534473	3L_4534473_SNP [dm3] 3L_4534473_SNP [dm6]	G	C	3.772e^-4	0.853	INTRON CG11353
3L	12615746	3L_12615746_MNP [dm3] 3L_12622646_MNP [dm6]	GAA	AGC	3.774e^-4	0.853	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	17861790	2L_17861790_DEL [dm3] 2L_17861790_DEL [dm6]	AA	A	3.774e^-4	0.853	INTRON CadN2
X	4513872	X_4513872_INS [dm3] X_4619839_INS [dm6]	CG	ATCTCTTATT	3.777e^-4	0.853	INTRON peb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	3290362	X_3290362_SNP [dm3] X_3396329_SNP [dm6]	T	A	3.780e^-4	0.853	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12744630	3R_12744630_SNP [dm3] 3R_16918908_SNP [dm6]	G	A	3.787e^-4	0.853	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	1034963	2L_1034963_SNP [dm3] 2L_1034963_SNP [dm6]	A	G	3.790e^-4	0.853	UPSTREAM IA-2 INTRON IA-2
2R	17621665	2R_17621665_SNP [dm3] 2R_21734160_SNP [dm6]	T	A	3.797e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	16890366	3R_16890366_SNP [dm3] 3R_21064644_SNP [dm6]	G	A	3.803e^-4	0.853	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3L	742992	3L_742992_DEL [dm3] 3L_742992_DEL [dm6]	ATGGTTTTTGATAACTAA...	A	3.815e^-4	0.853	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	5830823	3L_5830823_SNP [dm3] 3L_5837723_SNP [dm6]	C	A	3.825e^-4	0.853	INTRON vn
3R	15214327	3R_15214327_SNP [dm3] 3R_19388605_SNP [dm6]	C	T	3.827e^-4	0.853	SYNONYMOUS_CODING CG3734 INTRON Ino80	TF binding site mE1_TFBS_sens
3R	14618452	3R_14618452_SNP [dm3] 3R_18792730_SNP [dm6]	G	A	3.832e^-4	0.853	UPSTREAM CG7720 INTRON CG7720
3R	26618595	3R_26618595_SNP [dm3] 3R_30792873_SNP [dm6]	T	G	3.836e^-4	0.853	SYNONYMOUS_CODING wts	TF binding site mE1_TFBS_chinmo
3R	14695533	3R_14695533_SNP [dm3] 3R_18869811_SNP [dm6]	T	A	3.843e^-4	0.853	INTERGENIC
2R	20033431	2R_20033431_SNP [dm3] 2R_24145908_SNP [dm6]	A	G	3.844e^-4	0.853	INTRON Dat
2R	13739276	2R_13739276_SNP [dm3] 2R_17851771_SNP [dm6]	G	A	3.844e^-4	0.853	INTRON olf186-F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
3R	22017963	3R_22017963_SNP [dm3] 3R_26192241_SNP [dm6]	T	G	3.850e^-4	0.853	INTERGENIC
2R	10417824	2R_10417824_SNP [dm3] 2R_14530319_SNP [dm6]	A	G	3.854e^-4	0.853	INTRON ttv
2R	6606992	2R_6606992_SNP [dm3] 2R_10719487_SNP [dm6]	A	T	3.855e^-4	0.853	INTRON stan
3L	19496781	3L_19496781_SNP [dm3] 3L_19503681_SNP [dm6]	G	A	3.858e^-4	0.853	START_GAINED CG9452 UTR_5_PRIME CG9452
3R	25617603	3R_25617603_SNP [dm3] 3R_29791881_SNP [dm6]	G	T	3.863e^-4	0.853	SYNONYMOUS_CODING kay	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2647828	3L_2647828_SNP [dm3] 3L_2647828_SNP [dm6]	A	G	3.867e^-4	0.853	UPSTREAM CG1246 DOWNSTREAM CG1143 INTERGENIC
3L	7938431	3L_7938431_SNP [dm3] 3L_7945331_SNP [dm6]	G	A	3.869e^-4	0.853	DOWNSTREAM CG43880 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14841922	X_14841922_SNP [dm3] X_14947889_SNP [dm6]	G	A	3.880e^-4	0.853	INTRON pdgy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10694223	3L_10694223_SNP [dm3] 3L_10701123_SNP [dm6]	C	A	3.885e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25226172	3R_25226172_DEL [dm3] 3R_29400450_DEL [dm6]	ATTAAGTATCAA...	A	3.890e^-4	0.853	INTRON Ptp99A
3R	11322539	3R_11322539_DEL [dm3] 3R_15496817_DEL [dm6]	TC	T	3.895e^-4	0.853	INTERGENIC
3L	10702270	3L_10702270_SNP [dm3] 3L_10709170_SNP [dm6]	C	A	3.896e^-4	0.853	INTERGENIC
3L	6710275	3L_6710275_SNP [dm3] 3L_6717175_SNP [dm6]	G	A	3.897e^-4	0.853	INTRON ple	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	411206	3L_411206_INS [dm3] 3L_411206_INS [dm6]	C	CA	3.899e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13106773	3R_13106773_SNP [dm3] 3R_17281051_SNP [dm6]	T	C	3.916e^-4	0.853	INTERGENIC
X	20215260	X_20215260_SNP [dm3] X_20344233_SNP [dm6]	A	C	3.921e^-4	0.853	INTERGENIC	transposable element FlyBase
2R	9147340	2R_9147340_DEL [dm3] 2R_13259835_DEL [dm6]	AA	C	3.925e^-4	0.853	UPSTREAM CG42319 INTERGENIC
X	19401789	X_19401789_SNP [dm3] X_19507756_SNP [dm6]	C	T	3.936e^-4	0.853	SYNONYMOUS_CODING Pfrx INTRON CG14200	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7066775	2R_7066775_SNP [dm3] 2R_11179270_SNP [dm6]	G	C	3.940e^-4	0.853	INTRON shn	TF binding site mE1_TFBS_inv
3L	4534415	3L_4534415_SNP [dm3] 3L_4534415_SNP [dm6]	G	T	3.955e^-4	0.853	INTRON CG11353
3L	1565411	3L_1565411_SNP [dm3] 3L_1565411_SNP [dm6]	C	T	3.958e^-4	0.853	START_GAINED CG12003 UTR_5_PRIME CG12003 INTRON CG7879	TF binding site mE1_TFBS_sens
3R	3962708	3R_3962708_SNP [dm3] 3R_8136986_SNP [dm6]	C	T	3.969e^-4	0.853	INTERGENIC
3L	11846422	3L_11846422_SNP [dm3] 3L_11853322_SNP [dm6]	G	A	3.980e^-4	0.853	INTRON CG44837
2R	13242799	2R_13242799_SNP [dm3] 2R_17355294_SNP [dm6]	T	G	3.985e^-4	0.853	INTRON mbl
2L	1482138	2L_1482138_SNP [dm3] 2L_1482138_SNP [dm6]	T	A	3.986e^-4	0.853	INTERGENIC
3L	3143873	3L_3143873_SNP [dm3] 3L_3143873_SNP [dm6]	T	A	3.986e^-4	0.853	UTR_5_PRIME CG1291 UPSTREAM CG11537	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	1564534	3L_1564534_INS [dm3] 3L_1564534_INS [dm6]	A	AA	3.988e^-4	0.853	UPSTREAM CG12003 INTRON CG7879
3L	10694245	3L_10694245_SNP [dm3] 3L_10701145_SNP [dm6]	G	A	3.996e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14835275	3L_14835275_INS [dm3] 3L_14842175_INS [dm6]	T	TTGCAA	3.998e^-4	0.853	INTRON CG17839
X	14756956	X_14756956_SNP [dm3] X_14862923_SNP [dm6]	A	C	4.001e^-4	0.853	DOWNSTREAM CG9518 INTRON Flo2
2L	3282531	2L_3282531_SNP [dm3] 2L_3282531_SNP [dm6]	T	C	4.009e^-4	0.853	INTERGENIC
3R	13103400	3R_13103400_SNP [dm3] 3R_17277678_SNP [dm6]	A	G	4.012e^-4	0.853	INTERGENIC
3R	24421845	3R_24421845_SNP [dm3] 3R_28596123_SNP [dm6]	T	G	4.022e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15299896	3R_15299896_INS [dm3] 3R_19474174_INS [dm6]	A	AAACA	4.028e^-4	0.853	INTRON Dys
X	14841415	X_14841415_SNP [dm3] X_14947382_SNP [dm6]	T	A	4.036e^-4	0.853	INTRON pdgy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9849318	X_9849318_DEL [dm3] X_9955285_DEL [dm6]	TCGACT	T	4.039e^-4	0.853	INTERGENIC
X	14154432	X_14154432_SNP [dm3] X_14260399_SNP [dm6]	A	T	4.043e^-4	0.853	UPSTREAM CG1461 INTERGENIC
X	1195508	X_1195508_SNP [dm3] X_1301475_SNP [dm6]	T	A	4.050e^-4	0.853	INTRON DAAM
3L	21175942	3L_21175942_SNP [dm3] 3L_21182842_SNP [dm6]	C	T	4.056e^-4	0.853	UTR_3_PRIME chb DOWNSTREAM CG42337
3L	13487564	3L_13487564_SNP [dm3] 3L_13494464_SNP [dm6]	G	T	4.063e^-4	0.853	INTRON Tgi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	6451166	X_6451166_SNP [dm3] X_6557133_SNP [dm6]	C	T	4.066e^-4	0.853	SYNONYMOUS_CODING CG34417 INTRON CG34417
X	14854515	X_14854515_SNP [dm3] X_14960482_SNP [dm6]	A	T	4.068e^-4	0.853	INTRON eag	TF binding site mE1_TFBS_bab1
3L	4484340	3L_4484340_SNP [dm3] 3L_4484340_SNP [dm6]	T	C	4.069e^-4	0.853	UTR_3_PRIME CG11350 DOWNSTREAM CG13722	TF binding site mE1_TFBS_HSA
3L	4647084	3L_4647084_INS [dm3] 3L_4647084_INS [dm6]	T	TC	4.069e^-4	0.853	INTRON axo
3L	14814974	3L_14814974_SNP [dm3] 3L_14821874_SNP [dm6]	A	G	4.070e^-4	0.853	INTRON CG17839
X	6898468	X_6898468_SNP [dm3] X_7004435_SNP [dm6]	C	T	4.073e^-4	0.853	DOWNSTREAM Inx2 INTRON Inx7
2R	18985584	2R_18985584_SNP [dm3] 2R_23098061_SNP [dm6]	T	C	4.080e^-4	0.853	INTERGENIC
X	21930162	X_21930162_SNP [dm3] X_22528326_SNP [dm6]	C	T	4.085e^-4	0.853	SYNONYMOUS_CODING CG17600
X	11988190	X_11988190_SNP [dm3] X_12094157_SNP [dm6]	G	T	4.089e^-4	0.853	INTRON CR43960 & 1 other
3L	14313189	3L_14313189_SNP [dm3] 3L_14320089_SNP [dm6]	A	G	4.090e^-4	0.853	INTRON fz
3R	25364751	3R_25364751_SNP [dm3] 3R_29539029_SNP [dm6]	T	C	4.091e^-4	0.853	INTERGENIC
3R	26933574	3R_26933574_SNP [dm3] 3R_31107852_SNP [dm6]	G	A	4.098e^-4	0.853	INTRON CG11318
3R	4341461	3R_4341461_SNP [dm3] 3R_8515739_SNP [dm6]	C	T	4.100e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	13135298	X_13135298_SNP [dm3] X_13241265_SNP [dm6]	A	G	4.107e^-4	0.853	INTRON mew
X	14804057	X_14804057_SNP [dm3] X_14910024_SNP [dm6]	T	A	4.129e^-4	0.853	UTR_3_PRIME CG14406 UPSTREAM CG9509 DOWNSTREAM CG14406 INTRON Flo2	regulatory region REDfly_CRMs
2R	10417946	2R_10417946_DEL [dm3] 2R_14530441_DEL [dm6]	TTTAATTTTACT...	T	4.141e^-4	0.853	INTRON ttv
3L	16331253	3L_16331253_SNP [dm3] 3L_16338153_SNP [dm6]	G	C	4.146e^-4	0.853	UPSTREAM CG4998 INTERGENIC
2L	5548115	2L_5548115_SNP [dm3] 2L_5548115_SNP [dm6]	C	T	4.146e^-4	0.853	INTRON Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	1733503	3L_1733503_SNP [dm3] 3L_1733503_SNP [dm6]	G	A	4.154e^-4	0.853	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	20690291	2L_20690291_SNP [dm3] 2L_20690291_SNP [dm6]	G	T	4.155e^-4	0.853	NON_SYNONYMOUS_CODING Hr38 UTR_5_PRIME Hr38	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	20945852	2R_20945852_SNP [dm3] 2R_25058329_SNP [dm6]	G	C	4.156e^-4	0.853	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_prd
2R	12447776	2R_12447776_SNP [dm3] 2R_16560271_SNP [dm6]	G	A	4.158e^-4	0.853	SYNONYMOUS_CODING DAT
3L	14385307	3L_14385307_SNP [dm3] 3L_14392207_SNP [dm6]	A	G	4.162e^-4	0.853	INTERGENIC
2L	3523992	2L_3523992_SNP [dm3] 2L_3523992_SNP [dm6]	C	A	4.170e^-4	0.853	UTR_5_PRIME Sr-CIV
3L	428273	3L_428273_DEL [dm3] 3L_428273_DEL [dm6]	CGGGTC	C	4.173e^-4	0.853	INTERGENIC
2L	7615512	2L_7615512_SNP [dm3] 2L_7615512_SNP [dm6]	G	A	4.175e^-4	0.853	INTRON CG6739
2L	19743827	2L_19743827_SNP [dm3] 2L_19743827_SNP [dm6]	G	A	4.183e^-4	0.853	SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4045004	3R_4045004_SNP [dm3] 3R_8219282_SNP [dm6]	A	G	4.185e^-4	0.853	NON_SYNONYMOUS_CODING CG7800 UPSTREAM CG18249
2R	8372602	2R_8372602_SNP [dm3] 2R_12485097_SNP [dm6]	C	A	4.192e^-4	0.853	INTRON Dh44-R2
3L	2171809	3L_2171809_SNP [dm3] 3L_2171809_SNP [dm6]	T	A	4.196e^-4	0.853	UPSTREAM CG5704 EXON CR15821
2L	5511194	2L_5511194_SNP [dm3] 2L_5511194_SNP [dm6]	A	C	4.203e^-4	0.853	INTERGENIC
3L	22844563	3L_22844563_SNP [dm3] 3L_22851463_SNP [dm6]	C	A	4.219e^-4	0.853	UPSTREAM CR43426 DOWNSTREAM CG32462 INTRON CR43426	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	9515311	2L_9515311_SNP [dm3] 2L_9515311_SNP [dm6]	T	C	4.222e^-4	0.853	SPLICE_SITE_REGION CG33298 INTRON CG33298
2L	3795179	2L_3795179_SNP [dm3] 2L_3795179_SNP [dm6]	G	A	4.225e^-4	0.853	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9329852	3L_9329852_SNP [dm3] 3L_9336752_SNP [dm6]	T	C	4.226e^-4	0.853	SYNONYMOUS_CODING PGRP-LA UTR_5_PRIME PGRP-LA
2R	14270956	2R_14270956_DEL [dm3] 2R_18383451_DEL [dm6]	ATTTTT	A	4.231e^-4	0.853	UPSTREAM IM1 & 1 other INTERGENIC
2R	7961322	2R_7961322_SNP [dm3] 2R_12073817_SNP [dm6]	C	T	4.233e^-4	0.853	INTRON CG8888
X	20403448	X_20403448_SNP [dm3] X_20532421_SNP [dm6]	C	T	4.247e^-4	0.853	INTERGENIC
X	2691367	X_2691367_SNP [dm3] X_2797334_SNP [dm6]	G	A	4.247e^-4	0.853	UPSTREAM w INTRON kirre	TF binding site BDTNP1_TFBS_z
3R	4354693	3R_4354693_SNP [dm3] 3R_8528971_SNP [dm6]	C	T	4.248e^-4	0.853	UPSTREAM CG11741 INTERGENIC	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	1754842	2L_1754842_SNP [dm3] 2L_1754842_SNP [dm6]	A	G	4.250e^-4	0.853	DOWNSTREAM Gr22f INTERGENIC
2L	17861799	2L_17861799_SNP [dm3] 2L_17861799_SNP [dm6]	A	C	4.256e^-4	0.853	INTRON CadN2
2R	17897289	2R_17897289_SNP [dm3] 2R_22009784_SNP [dm6]	G	A	4.260e^-4	0.853	INTRON CG34370
X	9441548	X_9441548_SNP [dm3] X_9547515_SNP [dm6]	T	G	4.263e^-4	0.853	INTRON CG32700
2L	11849737	2L_11849737_SNP [dm3] 2L_11849737_SNP [dm6]	G	A	4.268e^-4	0.853	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
2L	13710793	2L_13710793_SNP [dm3] 2L_13710793_SNP [dm6]	A	G	4.277e^-4	0.853	DOWNSTREAM CG7311 INTRON CG31814
2L	588357	2L_588357_SNP [dm3] 2L_588357_SNP [dm6]	A	T	4.281e^-4	0.853	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6699506	3L_6699506_SNP [dm3] 3L_6706406_SNP [dm6]	C	T	4.283e^-4	0.853	INTRON CG8519
X	10544076	X_10544076_SNP [dm3] X_10650043_SNP [dm6]	C	T	4.284e^-4	0.853	INTRON X11Lbeta
2R	13231432	2R_13231432_SNP [dm3] 2R_17343927_SNP [dm6]	C	T	4.286e^-4	0.853	INTRON mbl
2R	6796209	2R_6796209_SNP [dm3] 2R_10908704_SNP [dm6]	T	C	4.288e^-4	0.853	INTERGENIC
2L	13637068	2L_13637068_SNP [dm3] 2L_13637068_SNP [dm6]	A	C	4.300e^-4	0.853	DOWNSTREAM kuz INTRON kuz
3R	15589885	3R_15589885_SNP [dm3] 3R_19764163_SNP [dm6]	A	C	4.302e^-4	0.853	INTRON GluClalpha
2R	19504706	2R_19504706_SNP [dm3] 2R_23617183_SNP [dm6]	T	G	4.314e^-4	0.853	UPSTREAM CG17664 INTERGENIC	TF binding site mE1_TFBS_sens
2R	18540270	2R_18540270_SNP [dm3] 2R_22652765_SNP [dm6]	G	C	4.316e^-4	0.853	SYNONYMOUS_CODING Cyp6d2 UTR_3_PRIME nsr DOWNSTREAM nsr
3R	14351051	3R_14351051_SNP [dm3] 3R_18525329_SNP [dm6]	G	A	4.322e^-4	0.853	INTRON fru	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	712343	3L_712343_SNP [dm3] 3L_712343_SNP [dm6]	A	C	4.333e^-4	0.853	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	19504913	2R_19504913_SNP [dm3] 2R_23617390_SNP [dm6]	G	A	4.334e^-4	0.853	UPSTREAM CG17664 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14389469	3L_14389469_SNP [dm3] 3L_14396369_SNP [dm6]	C	G	4.336e^-4	0.853	INTERGENIC
3R	27111842	3R_27111842_SNP [dm3] 3R_31286120_SNP [dm6]	A	C	4.337e^-4	0.853	INTERGENIC
3L	7479963	3L_7479963_SNP [dm3] 3L_7486863_SNP [dm6]	G	T	4.338e^-4	0.853	SYNONYMOUS_CODING mthl6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19803809	2L_19803809_SNP [dm3] 2L_19803809_SNP [dm6]	C	T	4.339e^-4	0.853	INTRON sick
3R	27137550	3R_27137550_SNP [dm3] 3R_31311828_SNP [dm6]	C	T	4.339e^-4	0.853	UTR_5_PRIME CG34347	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	16866165	2R_16866165_SNP [dm3] 2R_20978660_SNP [dm6]	G	C	4.341e^-4	0.853	UTR_5_PRIME CG15650 UPSTREAM CG9313 & 1 other
2L	12381038	2L_12381038_SNP [dm3] 2L_12381038_SNP [dm6]	C	G	4.358e^-4	0.853	INTRON bru-2
2R	4076050	2R_4076050_SNP [dm3] 2R_8188545_SNP [dm6]	G	A	4.363e^-4	0.853	INTRON LRP1	TF binding site mE1_TFBS_cad
2L	7616051	2L_7616051_SNP [dm3] 2L_7616051_SNP [dm6]	A	C	4.367e^-4	0.853	INTRON CG6739
2R	6797806	2R_6797806_SNP [dm3] 2R_10910301_SNP [dm6]	T	C	4.374e^-4	0.853	NON_SYNONYMOUS_CODING Obp47a
2R	18542589	2R_18542589_SNP [dm3] 2R_22655084_SNP [dm6]	A	G	4.388e^-4	0.853	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other INTRON CG30196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24397623	3R_24397623_SNP [dm3] 3R_28571901_SNP [dm6]	T	C	4.391e^-4	0.853	INTERGENIC	regulatory region REDfly_CRMs
3L	4232757	3L_4232757_SNP [dm3] 3L_4232757_SNP [dm6]	G	T	4.391e^-4	0.853	INTRON ImpL2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	8156894	X_8156894_INS [dm3] X_8262861_INS [dm6]	T	TTCCACGCTCCGAACCAAAT...	4.394e^-4	0.853	INTRON CG1632	TF binding site BDTNP1_TFBS_da
3L	4159506	3L_4159506_SNP [dm3] 3L_4159506_SNP [dm6]	T	A	4.395e^-4	0.853	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	11663028	3L_11663028_SNP [dm3] 3L_11669928_SNP [dm6]	A	G	4.402e^-4	0.853	INTRON CG32085
2R	7945612	2R_7945612_INS [dm3] 2R_12058107_INS [dm6]	A	AA	4.405e^-4	0.853	INTRON Drep-3
3R	22025752	3R_22025752_SNP [dm3] 3R_26200030_SNP [dm6]	G	A	4.420e^-4	0.853	INTRON CR44320	TF binding site BDTNP1_TFBS_twi
3R	8638979	3R_8638979_SNP [dm3] 3R_12813257_SNP [dm6]	C	G	4.426e^-4	0.853	INTRON CG31345
2R	11340875	2R_11340875_SNP [dm3] 2R_15453370_SNP [dm6]	C	T	4.435e^-4	0.853	INTRON CG43729
3R	14851132	3R_14851132_SNP [dm3] 3R_19025410_SNP [dm6]	T	G	4.435e^-4	0.853	SYNONYMOUS_CODING CG14285 DOWNSTREAM CG14286 & 1 other
X	3894992	X_3894992_SNP [dm3] X_4000959_SNP [dm6]	G	A	4.436e^-4	0.853	DOWNSTREAM CR43298 INTERGENIC
2R	7408586	2R_7408586_SNP [dm3] 2R_11521081_SNP [dm6]	C	T	4.438e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9661315	3L_9661315_SNP [dm3] 3L_9668215_SNP [dm6]	A	G	4.440e^-4	0.853	INTRON fry	TF binding site mE1_TFBS_cad
3R	4938018	3R_4938018_SNP [dm3] 3R_9112296_SNP [dm6]	C	A	4.441e^-4	0.853	INTRON pum
X	4560961	X_4560961_SNP [dm3] X_4666928_SNP [dm6]	T	A	4.444e^-4	0.853	UPSTREAM CG3009 DOWNSTREAM rap INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
2R	7157912	2R_7157912_SNP [dm3] 2R_11270407_SNP [dm6]	G	C	4.444e^-4	0.853	INTRON Cpr47Ef
3R	26871231	3R_26871231_SNP [dm3] 3R_31045509_SNP [dm6]	A	C	4.449e^-4	0.853	UPSTREAM CG33920 INTRON CanA1
3R	24353994	3R_24353994_SNP [dm3] 3R_28528272_SNP [dm6]	G	A	4.451e^-4	0.853	NON_SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	781279	3L_781279_SNP [dm3] 3L_781279_SNP [dm6]	G	A	4.458e^-4	0.853	INTERGENIC
2L	16619019	2L_16619019_SNP [dm3] 2L_16619019_SNP [dm6]	T	A	4.462e^-4	0.853	INTRON CG42389	TF binding site BDTNP1_TFBS_dl
3R	17943476	3R_17943476_SNP [dm3] 3R_22117754_SNP [dm6]	G	T	4.463e^-4	0.853	NON_SYNONYMOUS_CODING Ir94c UPSTREAM Ir94b
3L	18561191	3L_18561191_SNP [dm3] 3L_18568091_SNP [dm6]	A	T	4.466e^-4	0.853	INTRON AstC-R1
3R	4353335	3R_4353335_SNP [dm3] 3R_8527613_SNP [dm6]	A	C	4.470e^-4	0.853	DOWNSTREAM CG31259 & 1 other INTERGENIC
2R	13739214	2R_13739214_SNP [dm3] 2R_17851709_SNP [dm6]	A	G	4.474e^-4	0.853	INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
3L	5884838	3L_5884838_SNP [dm3] 3L_5891738_SNP [dm6]	C	A	4.474e^-4	0.853	INTERGENIC
3R	13469273	3R_13469273_SNP [dm3] 3R_17643551_SNP [dm6]	T	C	4.475e^-4	0.853	INTRON CG43175
3L	12134721	3L_12134721_SNP [dm3] 3L_12141621_SNP [dm6]	C	G	4.482e^-4	0.853	NON_SYNONYMOUS_CODING RhoGAP68F
3R	15131423	3R_15131423_SNP [dm3] 3R_19305701_SNP [dm6]	G	A	4.493e^-4	0.853	SYNONYMOUS_CODING Dl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	3792574	2R_3792574_SNP [dm3] 2R_7905069_SNP [dm6]	A	G	4.493e^-4	0.853	INTRON CG30377
3R	23480694	3R_23480694_SNP [dm3] 3R_27654972_SNP [dm6]	A	G	4.502e^-4	0.853	INTRON tau
3R	15154301	3R_15154301_SNP [dm3] 3R_19328579_SNP [dm6]	A	G	4.507e^-4	0.853	INTERGENIC
2L	15469662	2L_15469662_SNP [dm3] 2L_15469662_SNP [dm6]	A	T	4.507e^-4	0.853	UPSTREAM CR45353 INTERGENIC
3R	25080196	3R_25080196_SNP [dm3] 3R_29254474_SNP [dm6]	C	G	4.508e^-4	0.853	INTRON stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	16890805	3R_16890805_SNP [dm3] 3R_21065083_SNP [dm6]	A	C	4.509e^-4	0.853	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3L	712322	3L_712322_SNP [dm3] 3L_712322_SNP [dm6]	A	G	4.511e^-4	0.853	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	4354841	3R_4354841_SNP [dm3] 3R_8529119_SNP [dm6]	C	G	4.511e^-4	0.853	UPSTREAM CG11741 INTERGENIC	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	2537851	3L_2537851_SNP [dm3] 3L_2537851_SNP [dm6]	G	T	4.511e^-4	0.853	INTRON Spn
2L	2277437	2L_2277437_SNP [dm3] 2L_2277437_SNP [dm6]	A	T	4.518e^-4	0.853	DOWNSTREAM CR43753 INTRON CR43753
3L	4534496	3L_4534496_SNP [dm3] 3L_4534496_SNP [dm6]	A	G	4.530e^-4	0.853	INTRON CG11353
2L	13841216	2L_13841216_SNP [dm3] 2L_13841216_SNP [dm6]	A	T	4.535e^-4	0.853	SYNONYMOUS_CODING CG33307 INTRON CenG1A
2L	18919697	2L_18919697_SNP [dm3] 2L_18919697_SNP [dm6]	A	C	4.551e^-4	0.853	INTRON ssp3	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sbb
3R	22518295	3R_22518295_SNP [dm3] 3R_26692573_SNP [dm6]	G	C	4.552e^-4	0.853	UTR_3_PRIME TwdlQ	TF binding site mE1_TFBS_cad
3R	25435061	3R_25435061_DEL [dm3] 3R_29609339_DEL [dm6]	CCT	C	4.558e^-4	0.853	DOWNSTREAM Diedel2 INTRON alph
2L	19835455	2L_19835455_SNP [dm3] 2L_19835455_SNP [dm6]	A	C	4.561e^-4	0.853	INTRON sick
X	20215452	X_20215452_INS [dm3] X_20344425_INS [dm6]	AC	TTATGCCG	4.565e^-4	0.853	INTERGENIC
2L	9103236	2L_9103236_SNP [dm3] 2L_9103236_SNP [dm6]	C	T	4.566e^-4	0.853	INTERGENIC
X	12795333	X_12795333_DEL [dm3] X_12901300_DEL [dm6]	AC	A	4.571e^-4	0.853	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	12795340	X_12795340_DEL [dm3] X_12901307_DEL [dm6]	ACAACT	A	4.571e^-4	0.853	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	17590899	2R_17590899_SNP [dm3] 2R_21703394_SNP [dm6]	G	A	4.575e^-4	0.853	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
2L	15549826	2L_15549826_SNP [dm3] 2L_15549826_SNP [dm6]	C	G	4.577e^-4	0.853	UPSTREAM CR45728 & 1 other INTERGENIC
2L	8370098	2L_8370098_SNP [dm3] 2L_8370098_SNP [dm6]	A	T	4.579e^-4	0.853	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
2L	606452	2L_606452_SNP [dm3] 2L_606452_SNP [dm6]	C	T	4.592e^-4	0.853	DOWNSTREAM CR43648 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18478663	3R_18478663_SNP [dm3] 3R_22652941_SNP [dm6]	T	A	4.597e^-4	0.853	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27130631	3R_27130631_SNP [dm3] 3R_31304909_SNP [dm6]	G	C	4.605e^-4	0.853	INTRON CG11340	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	10534117	X_10534117_SNP [dm3] X_10640084_SNP [dm6]	A	G	4.610e^-4	0.853	INTRON X11Lbeta
3L	412168	3L_412168_SNP [dm3] 3L_412168_SNP [dm6]	G	A	4.612e^-4	0.853	INTERGENIC
3L	11846426	3L_11846426_SNP [dm3] 3L_11853326_SNP [dm6]	A	T	4.623e^-4	0.853	INTRON CG44837
3R	13139061	3R_13139061_SNP [dm3] 3R_17313339_SNP [dm6]	G	T	4.625e^-4	0.853	INTERGENIC
3L	2650069	3L_2650069_SNP [dm3] 3L_2650069_SNP [dm6]	C	T	4.636e^-4	0.853	SYNONYMOUS_CODING CG1246 DOWNSTREAM Aats-pro	TF binding site mE1_TFBS_HSA
3L	12025599	3L_12025599_SNP [dm3] 3L_12032499_SNP [dm6]	T	C	4.637e^-4	0.853	UPSTREAM CG43993 INTRON rols
3L	17891621	3L_17891621_SNP [dm3] 3L_17898521_SNP [dm6]	T	C	4.643e^-4	0.853	DOWNSTREAM Prestin INTERGENIC
X	4764291	X_4764291_SNP [dm3] X_4870258_SNP [dm6]	T	C	4.653e^-4	0.853	INTRON CG42594
X	13504292	X_13504292_SNP [dm3] X_13610259_SNP [dm6]	G	C	4.676e^-4	0.853	SYNONYMOUS_CODING Ndc80 DOWNSTREAM CG11178	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3695825	3L_3695825_SNP [dm3] 3L_3695825_SNP [dm6]	G	A	4.677e^-4	0.853	INTERGENIC
2L	9129050	2L_9129050_SNP [dm3] 2L_9129050_SNP [dm6]	G	A	4.680e^-4	0.853	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6898428	X_6898428_SNP [dm3] X_7004395_SNP [dm6]	A	C	4.682e^-4	0.853	DOWNSTREAM Inx2 INTRON Inx7
2L	715569	2L_715569_SNP [dm3] 2L_715569_SNP [dm6]	A	T	4.683e^-4	0.853	UPSTREAM ds DOWNSTREAM CR44988 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	14322380	2L_14322380_SNP [dm3] 2L_14322380_SNP [dm6]	C	T	4.686e^-4	0.853	SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_cad
X	7623480	X_7623480_SNP [dm3] X_7729447_SNP [dm6]	A	G	4.692e^-4	0.853	INTRON CG12155	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	4373697	3L_4373697_SNP [dm3] 3L_4373697_SNP [dm6]	A	G	4.693e^-4	0.853	INTRON DopEcR
2L	12263083	2L_12263083_SNP [dm3] 2L_12263083_SNP [dm6]	G	T	4.695e^-4	0.853	INTRON aret
3R	18478538	3R_18478538_SNP [dm3] 3R_22652816_SNP [dm6]	G	A	4.696e^-4	0.853	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7987958	3R_7987958_INS [dm3] 3R_12162236_INS [dm6]	G	GGCCAACGAACCAGTCAG...	4.697e^-4	0.853	DOWNSTREAM Cpn INTERGENIC
3L	4619439	3L_4619439_SNP [dm3] 3L_4619439_SNP [dm6]	T	A	4.710e^-4	0.853	INTRON Src64B
3L	4841826	3L_4841826_SNP [dm3] 3L_4841826_SNP [dm6]	T	C	4.712e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	18262635	3L_18262635_SNP [dm3] 3L_18269535_SNP [dm6]	T	A	4.716e^-4	0.853	INTERGENIC

By genomic position
Variant impact
Gene name

Wing_Area phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results