DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.859e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.02852
In_3R_K	0.01656
In_3R_Mo	0.08157

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	7.7519	0.0207
In_3R_Mo	6.1069	0.0472

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2299 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	23513340	3R_23513340_SNP [dm3] 3R_27687618_SNP [dm6]	C	T	1.064e^-6	0.777	NON_SYNONYMOUS_CODING CG31055 INTRON CG12880	TF binding site mE1_TFBS_chinmo
2L	2427459	2L_2427459_SNP [dm3] 2L_2427459_SNP [dm6]	A	T	1.798e^-6	0.777	UPSTREAM dpp EXON CR44912
2L	9570049	2L_9570049_SNP [dm3] 2L_9570049_SNP [dm6]	C	G	2.408e^-6	0.777	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9569454	2L_9569454_SNP [dm3] 2L_9569454_SNP [dm6]	G	C	3.179e^-6	0.777	UPSTREAM CR44149 & 1 other INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	9608297	3R_9608297_SNP [dm3] 3R_13782575_SNP [dm6]	C	T	3.235e^-6	0.777	UPSTREAM Dip-B DOWNSTREAM CG9286 INTRON Dip-B
2R	3261299	2R_3261299_DEL [dm3] 2R_7373794_DEL [dm6]	TGAAT	T	5.290e^-6	0.777	INTRON Dscam1	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	18476619	2L_18476619_SNP [dm3] 2L_18476619_SNP [dm6]	T	C	5.447e^-6	0.777	INTRON CG10283	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	18476602	2L_18476602_SNP [dm3] 2L_18476602_SNP [dm6]	G	T	5.777e^-6	0.777	INTRON CG10283	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	5131935	2R_5131935_SNP [dm3] 2R_9244430_SNP [dm6]	T	G	5.831e^-6	0.777	DOWNSTREAM Cyp4p3 INTRON hig
2R	3261295	2R_3261295_SNP [dm3] 2R_7373790_SNP [dm6]	C	T	5.922e^-6	0.777	INTRON Dscam1	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18000888	2R_18000888_SNP [dm3] 2R_22113383_SNP [dm6]	A	G	6.277e^-6	0.777	UPSTREAM CG30280 & 1 other INTRON Vrp1
2L	21929216	2L_21929216_SNP [dm3] 2L_21929216_SNP [dm6]	A	G	7.803e^-6	0.777	INTERGENIC
2R	17920198	2R_17920198_SNP [dm3] 2R_22032693_SNP [dm6]	T	G	7.869e^-6	0.777	INTRON CG34370
2R	3261289	2R_3261289_SNP [dm3] 2R_7373784_SNP [dm6]	T	A	8.061e^-6	0.777	INTRON Dscam1	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9570147	2L_9570147_INS [dm3] 2L_9570147_INS [dm6]	A	AC	8.437e^-6	0.777	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3261291	2R_3261291_SNP [dm3] 2R_7373786_SNP [dm6]	A	T	8.632e^-6	0.777	INTRON Dscam1	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14391767	2L_14391767_SNP [dm3] 2L_14391767_SNP [dm6]	A	G	9.461e^-6	0.777	SYNONYMOUS_CODING elB	TF binding site mE1_TFBS_chinmo
2L	9570296	2L_9570296_SNP [dm3] 2L_9570296_SNP [dm6]	A	C	9.655e^-6	0.777	UTR_5_PRIME CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12997190	2L_12997190_SNP [dm3] 2L_12997190_SNP [dm6]	G	T	1.034e^-5	0.777	INTRON CG12404
2L	9570169	2L_9570169_SNP [dm3] 2L_9570169_SNP [dm6]	A	G	1.070e^-5	0.777	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9570118	2L_9570118_SNP [dm3] 2L_9570118_SNP [dm6]	A	T	1.161e^-5	0.777	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19360749	X_19360749_DEL [dm3] X_19466716_DEL [dm6]	TT	A	1.221e^-5	0.777	INTRON kek5
2L	9570077	2L_9570077_DEL [dm3] 2L_9570077_DEL [dm6]	ATTAATAGTTGA...	A	1.248e^-5	0.777	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11924542	3L_11924542_SNP [dm3] 3L_11931442_SNP [dm6]	C	T	1.341e^-5	0.777	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2427416	2L_2427416_SNP [dm3] 2L_2427416_SNP [dm6]	G	A	1.388e^-5	0.777	UPSTREAM dpp EXON CR44912
3L	11924551	3L_11924551_SNP [dm3] 3L_11931451_SNP [dm6]	T	A	1.400e^-5	0.777	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5210904	2L_5210904_SNP [dm3] 2L_5210904_SNP [dm6]	A	G	1.558e^-5	0.777	INTRON Cyp28d1
2L	20404418	2L_20404418_SNP [dm3] 2L_20404418_SNP [dm6]	G	A	1.569e^-5	0.777	INTRON CG10947
2L	13610291	2L_13610291_SNP [dm3] 2L_13610291_SNP [dm6]	C	T	1.730e^-5	0.777	NON_SYNONYMOUS_CODING kuz DOWNSTREAM mir-2489
2R	19564911	2R_19564911_SNP [dm3] 2R_23677388_SNP [dm6]	T	A	1.733e^-5	0.777	INTRON Pde8	TF binding site mE1_TFBS_cad
3R	17236543	3R_17236543_SNP [dm3] 3R_21410821_SNP [dm6]	G	A	1.784e^-5	0.777	DOWNSTREAM CheB93b INTRON lbl	TF binding site mE1_TFBS_cad
3L	8547757	3L_8547757_SNP [dm3] 3L_8554657_SNP [dm6]	A	T	1.787e^-5	0.777	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	332002	3L_332002_SNP [dm3] 3L_332002_SNP [dm6]	T	A	1.841e^-5	0.777	UTR_5_PRIME mthl9 DOWNSTREAM mthl10 INTRON Ptpmeg	TF binding site mE1_TFBS_Trl
2L	9568674	2L_9568674_INS [dm3] 2L_9568674_INS [dm6]	A	AATTAA	1.845e^-5	0.777	UPSTREAM CG3838 EXON CR44149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	3261315	2R_3261315_SNP [dm3] 2R_7373810_SNP [dm6]	A	G	1.950e^-5	0.777	INTRON Dscam1	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14388538	3R_14388538_SNP [dm3] 3R_18562816_SNP [dm6]	G	C	1.990e^-5	0.777	INTERGENIC
2L	3748124	2L_3748124_SNP [dm3] 2L_3748124_SNP [dm6]	C	A	2.048e^-5	0.777	INTRON CG10019
2L	8347374	2L_8347374_SNP [dm3] 2L_8347374_SNP [dm6]	C	T	2.110e^-5	0.777	INTRON CG7778
3L	10923261	3L_10923261_SNP [dm3] 3L_10930161_SNP [dm6]	C	T	2.116e^-5	0.777	INTERGENIC
X	12021418	X_12021418_INS [dm3] X_12127385_INS [dm6]	A	AAA	2.142e^-5	0.777	UPSTREAM Ten-a INTRON Ten-a
3R	10940970	3R_10940970_SNP [dm3] 3R_15115248_SNP [dm6]	G	T	2.189e^-5	0.777	INTRON CG42788
2L	19239692	2L_19239692_INS [dm3] 2L_19239692_INS [dm6]	T	TGCTTGT	2.200e^-5	0.777	INTERGENIC
2L	9570400	2L_9570400_SNP [dm3] 2L_9570400_SNP [dm6]	A	G	2.271e^-5	0.777	UTR_5_PRIME CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11859952	3R_11859952_SNP [dm3] 3R_16034230_SNP [dm6]	G	A	2.282e^-5	0.777	UPSTREAM pnr INTRON pnr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18456185	2R_18456185_DEL [dm3] 2R_22568680_DEL [dm6]	CTATTATTG	A	2.287e^-5	0.777	INTRON dnr1	TF binding site mE1_TFBS_Trl
2L	9568752	2L_9568752_SNP [dm3] 2L_9568752_SNP [dm6]	T	G	2.326e^-5	0.777	UPSTREAM CG3838 EXON CR44149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	16952489	2R_16952489_INS [dm3] 2R_21064984_INS [dm6]	A	AAA	2.363e^-5	0.777	UTR_5_PRIME Cht12 DOWNSTREAM Cht4
2L	20689700	2L_20689700_SNP [dm3] 2L_20689700_SNP [dm6]	C	G	2.432e^-5	0.777	INTRON Hr38	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo
2L	7151221	2L_7151221_SNP [dm3] 2L_7151221_SNP [dm6]	G	C	2.495e^-5	0.777	INTRON Pvf3
3L	18542911	3L_18542911_SNP [dm3] 3L_18549811_SNP [dm6]	C	A	2.568e^-5	0.777	INTERGENIC
3L	16202254	3L_16202254_SNP [dm3] 3L_16209154_SNP [dm6]	C	T	2.621e^-5	0.777	INTERGENIC	TF binding site mE1_TFBS_cad
2L	22101542	2L_22101542_SNP [dm3] 2L_22101542_SNP [dm6]	A	C	2.651e^-5	0.777	INTERGENIC
3L	1714888	3L_1714888_SNP [dm3] 3L_1714888_SNP [dm6]	C	T	2.675e^-5	0.777	SYNONYMOUS_CODING CG7991 DOWNSTREAM drpr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13100418	2R_13100418_SNP [dm3] 2R_17212913_SNP [dm6]	C	T	2.720e^-5	0.777	INTERGENIC
3R	13362356	3R_13362356_SNP [dm3] 3R_17536634_SNP [dm6]	C	A	2.762e^-5	0.777	SYNONYMOUS_CODING P5cr-2 DOWNSTREAM l_3_07882
3L	8547701	3L_8547701_SNP [dm3] 3L_8554601_SNP [dm6]	A	G	2.792e^-5	0.777	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8547718	3L_8547718_SNP [dm3] 3L_8554618_SNP [dm6]	C	A	2.792e^-5	0.777	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9570185	2L_9570185_SNP [dm3] 2L_9570185_SNP [dm6]	A	C	2.801e^-5	0.777	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9628469	3L_9628469_SNP [dm3] 3L_9635369_SNP [dm6]	A	T	2.810e^-5	0.777	INTRON fry
3L	4675363	3L_4675363_SNP [dm3] 3L_4675363_SNP [dm6]	G	A	2.819e^-5	0.777	INTRON axo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	4675371	3L_4675371_SNP [dm3] 3L_4675371_SNP [dm6]	A	G	2.819e^-5	0.777	INTRON axo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11467342	2R_11467342_SNP [dm3] 2R_15579837_SNP [dm6]	T	A	2.830e^-5	0.777	INTERGENIC
3L	1706645	3L_1706645_SNP [dm3] 3L_1706645_SNP [dm6]	G	A	2.849e^-5	0.777	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11467404	2R_11467404_SNP [dm3] 2R_15579899_SNP [dm6]	C	G	2.870e^-5	0.777	INTERGENIC
2R	11467386	2R_11467386_SNP [dm3] 2R_15579881_SNP [dm6]	G	A	2.899e^-5	0.777	INTERGENIC
2R	19564919	2R_19564919_SNP [dm3] 2R_23677396_SNP [dm6]	C	G	2.923e^-5	0.777	INTRON Pde8	TF binding site mE1_TFBS_cad
3L	722590	3L_722590_SNP [dm3] 3L_722590_SNP [dm6]	A	T	2.943e^-5	0.777	INTERGENIC
2L	12160930	2L_12160930_SNP [dm3] 2L_12160930_SNP [dm6]	G	A	2.968e^-5	0.777	UPSTREAM CG31861 INTRON CG31760
3R	11635316	3R_11635316_SNP [dm3] 3R_15809594_SNP [dm6]	C	T	3.011e^-5	0.777	UPSTREAM alpha-Man-IIb INTRON alpha-Man-IIb
2L	18328716	2L_18328716_SNP [dm3] 2L_18328716_SNP [dm6]	T	C	3.057e^-5	0.777	INTRON Fas3
X	21081254	X_21081254_SNP [dm3] X_21210227_SNP [dm6]	T	A	3.058e^-5	0.777	INTRON CG32521
3R	17236302	3R_17236302_SNP [dm3] 3R_21410580_SNP [dm6]	A	G	3.082e^-5	0.777	NON_SYNONYMOUS_CODING lbl DOWNSTREAM CheB93b	TF binding site mE1_TFBS_cad
3R	13469687	3R_13469687_SNP [dm3] 3R_17643965_SNP [dm6]	C	A	3.109e^-5	0.777	UPSTREAM CG43175 INTRON CG43175
2L	22020382	2L_22020382_SNP [dm3] 2L_22020382_SNP [dm6]	G	T	3.164e^-5	0.777	DOWNSTREAM CR33987 INTRON tio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	19286479	2L_19286479_SNP [dm3] 2L_19286479_SNP [dm6]	A	G	3.200e^-5	0.777	INTERGENIC
2L	21851919	2L_21851919_INS [dm3] 2L_21851919_INS [dm6]	T	TTCT	3.292e^-5	0.777	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	14857610	2L_14857610_SNP [dm3] 2L_14857610_SNP [dm6]	T	A	3.311e^-5	0.777	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	1791603	2L_1791603_SNP [dm3] 2L_1791603_SNP [dm6]	T	A	3.352e^-5	0.777	NON_SYNONYMOUS_CODING Gr22c DOWNSTREAM Gr22b
3R	24710863	3R_24710863_SNP [dm3] 3R_28885141_SNP [dm6]	C	G	3.362e^-5	0.777	SYNONYMOUS_CODING CG14526 INTRON CG33203	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1709859	3L_1709859_SNP [dm3] 3L_1709859_SNP [dm6]	G	A	3.382e^-5	0.777	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	2979778	X_2979778_SNP [dm3] X_3085745_SNP [dm6]	A	T	3.385e^-5	0.777	INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	2686879	2R_2686879_SNP [dm3] 2R_6799374_SNP [dm6]	G	T	3.428e^-5	0.777	UPSTREAM Epac INTERGENIC
2L	19239639	2L_19239639_SNP [dm3] 2L_19239639_SNP [dm6]	T	C	3.439e^-5	0.777	INTERGENIC
2L	22165124	2L_22165124_SNP [dm3] 2L_22165124_SNP [dm6]	C	A	3.562e^-5	0.789	UTR_3_PRIME CG42748 DOWNSTREAM Clamp & 1 other
3R	24710725	3R_24710725_SNP [dm3] 3R_28885003_SNP [dm6]	C	T	3.578e^-5	0.789	SYNONYMOUS_CODING CG14526 INTRON CG33203	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2427422	2L_2427422_DEL [dm3] 2L_2427422_DEL [dm6]	TAGTATCAAGGCCTAAATAA...	T	3.800e^-5	0.801	UPSTREAM dpp EXON CR44912
2R	16566870	2R_16566870_SNP [dm3] 2R_20679365_SNP [dm6]	G	T	3.804e^-5	0.801	INTERGENIC
2L	19239640	2L_19239640_SNP [dm3] 2L_19239640_SNP [dm6]	A	T	3.868e^-5	0.801	INTERGENIC
2L	14857618	2L_14857618_SNP [dm3] 2L_14857618_SNP [dm6]	C	A	3.890e^-5	0.801	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	18652304	2L_18652304_SNP [dm3] 2L_18652304_SNP [dm6]	A	G	3.931e^-5	0.801	SYNONYMOUS_CODING Cyp310a1 INTRON MESR3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9568691	2L_9568691_SNP [dm3] 2L_9568691_SNP [dm6]	C	T	4.059e^-5	0.801	UPSTREAM CG3838 EXON CR44149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9274953	2L_9274953_INS [dm3] 2L_9274953_INS [dm6]	A	AA	4.171e^-5	0.801	INTRON Ggamma30A
2L	9274946	2L_9274946_SNP [dm3] 2L_9274946_SNP [dm6]	C	A	4.181e^-5	0.801	INTRON Ggamma30A
2L	12154719	2L_12154719_SNP [dm3] 2L_12154719_SNP [dm6]	T	A	4.206e^-5	0.801	INTRON CG31760
2R	15349549	2R_15349549_SNP [dm3] 2R_19462044_SNP [dm6]	T	C	4.246e^-5	0.801	UPSTREAM par-1 INTRON par-1	TF binding site mE1_TFBS_Trl
3L	14142384	3L_14142384_SNP [dm3] 3L_14149284_SNP [dm6]	T	A	4.289e^-5	0.801	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	5899546	3R_5899546_DEL [dm3] 3R_10073824_DEL [dm6]	TAAACATTTTTATTACATAT...	T	4.296e^-5	0.801	UTR_3_PRIME CG5361 DOWNSTREAM nerfin-2	TF binding site mE1_TFBS_cad
2L	19311874	2L_19311874_SNP [dm3] 2L_19311874_SNP [dm6]	G	A	4.342e^-5	0.801	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	17920188	2R_17920188_DEL [dm3] 2R_22032683_DEL [dm6]	GGGCTGG	G	4.354e^-5	0.801	INTRON CG34370
2L	19239653	2L_19239653_SNP [dm3] 2L_19239653_SNP [dm6]	C	T	4.365e^-5	0.801	INTERGENIC
2L	19239650	2L_19239650_INS [dm3] 2L_19239650_INS [dm6]	T	TCGTTGTATATACGTAGATT...	4.385e^-5	0.801	INTERGENIC
3L	19481003	3L_19481003_SNP [dm3] 3L_19487903_SNP [dm6]	C	A	4.435e^-5	0.801	UTR_5_PRIME CG32212 INTRON pncr009:3L
2R	15352485	2R_15352485_SNP [dm3] 2R_19464980_SNP [dm6]	T	C	4.479e^-5	0.801	SYNONYMOUS_CODING par-1 INTRON par-1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3992991	2L_3992991_SNP [dm3] 2L_3992991_SNP [dm6]	T	G	4.488e^-5	0.801	INTERGENIC
3R	19475713	3R_19475713_SNP [dm3] 3R_23649991_SNP [dm6]	C	T	4.488e^-5	0.801	INTRON CG31145
X	15738163	X_15738163_SNP [dm3] X_15844130_SNP [dm6]	C	A	4.584e^-5	0.801	START_GAINED Aats-arg UTR_5_PRIME Aats-arg UPSTREAM CG8578	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
2R	504018	2R_504018_SNP [dm3] 2R_4616513_SNP [dm6]	A	T	4.609e^-5	0.801	INTERGENIC	transposable element FlyBase
3L	11408920	3L_11408920_INS [dm3] 3L_11415820_INS [dm6]	G	GATGGGT	4.617e^-5	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	20198576	X_20198576_SNP [dm3] X_20327549_SNP [dm6]	G	A	4.724e^-5	0.807	UTR_5_PRIME CG1631 INTRON CG1504
3R	16294728	3R_16294728_SNP [dm3] 3R_20469006_SNP [dm6]	C	T	4.733e^-5	0.807	INTRON Gfrl
3L	6727499	3L_6727499_SNP [dm3] 3L_6734399_SNP [dm6]	A	G	4.801e^-5	0.811	SYNONYMOUS_CODING dikar	TF binding site mE1_TFBS_HSA
3R	11635493	3R_11635493_SNP [dm3] 3R_15809771_SNP [dm6]	G	T	4.859e^-5	0.812	UPSTREAM alpha-Man-IIb INTRON alpha-Man-IIb
2L	9272771	2L_9272771_SNP [dm3] 2L_9272771_SNP [dm6]	G	T	4.950e^-5	0.812	INTRON Ggamma30A	TF binding site mE1_TFBS_Trl
3R	9373095	3R_9373095_SNP [dm3] 3R_13547373_SNP [dm6]	G	A	4.974e^-5	0.812	INTERGENIC
3R	2856491	3R_2856491_SNP [dm3] 3R_7030769_SNP [dm6]	T	C	5.183e^-5	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	11635239	3R_11635239_SNP [dm3] 3R_15809517_SNP [dm6]	G	T	5.193e^-5	0.812	INTRON alpha-Man-IIb
2R	3003479	2R_3003479_SNP [dm3] 2R_7115974_SNP [dm6]	G	A	5.443e^-5	0.812	INTRON esn	TF binding site mE1_TFBS_inv
3R	12146557	3R_12146557_SNP [dm3] 3R_16320835_SNP [dm6]	T	A	5.572e^-5	0.812	UPSTREAM tRNA:F2:89BC & 1 other INTRON Sulf1
3L	332433	3L_332433_SNP [dm3] 3L_332433_SNP [dm6]	A	G	5.594e^-5	0.812	UPSTREAM mthl9 DOWNSTREAM mthl10 INTRON Ptpmeg	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	13108475	3L_13108475_SNP [dm3] 3L_13115375_SNP [dm6]	C	T	5.601e^-5	0.812	SYNONYMOUS_CODING trn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens
2L	9569217	2L_9569217_SNP [dm3] 2L_9569217_SNP [dm6]	G	C	5.911e^-5	0.812	UPSTREAM CR44149 INTRON CG3838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14225112	3R_14225112_SNP [dm3] 3R_18399390_SNP [dm6]	A	T	5.953e^-5	0.812	UPSTREAM CG44009 & 1 other DOWNSTREAM CG12333 INTRON CG44009	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_Trl
X	8113188	X_8113188_SNP [dm3] X_8219155_SNP [dm6]	C	T	5.999e^-5	0.812	INTRON sdt	TF binding site BDTNP1_TFBS_dl
3R	23519319	3R_23519319_SNP [dm3] 3R_27693597_SNP [dm6]	G	A	6.128e^-5	0.812	UPSTREAM CG43319 DOWNSTREAM CG12880 INTERGENIC
3L	5956698	3L_5956698_SNP [dm3] 3L_5963598_SNP [dm6]	A	G	6.152e^-5	0.812	INTERGENIC
3L	11708446	3L_11708446_SNP [dm3] 3L_11715346_SNP [dm6]	A	G	6.160e^-5	0.812	UPSTREAM CG14132 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	19239618	2L_19239618_SNP [dm3] 2L_19239618_SNP [dm6]	A	G	6.257e^-5	0.812	INTERGENIC
3L	18193560	3L_18193560_SNP [dm3] 3L_18200460_SNP [dm6]	C	T	6.316e^-5	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	18193570	3L_18193570_SNP [dm3] 3L_18200470_SNP [dm6]	T	C	6.316e^-5	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	8429017	3R_8429017_SNP [dm3] 3R_12603295_SNP [dm6]	A	T	6.402e^-5	0.812	INTERGENIC
2R	14932148	2R_14932148_DEL [dm3] 2R_19044643_DEL [dm6]	AA	A	6.443e^-5	0.812	INTERGENIC
2L	3466488	2L_3466488_SNP [dm3] 2L_3466488_SNP [dm6]	T	A	6.466e^-5	0.812	UPSTREAM msl-2 DOWNSTREAM CG3238 INTRON Pdsw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	4803055	2R_4803055_SNP [dm3] 2R_8915550_SNP [dm6]	C	T	6.483e^-5	0.812	SYNONYMOUS_CODING lin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1938392	3R_1938392_SNP [dm3] 3R_6112670_SNP [dm6]	A	G	6.522e^-5	0.812	UPSTREAM Obp83g INTERGENIC	regulatory region REDfly_CRMs
3L	337491	3L_337491_SNP [dm3] 3L_337491_SNP [dm6]	C	T	6.579e^-5	0.812	INTRON Ptpmeg & 1 other
2R	16352095	2R_16352095_SNP [dm3] 2R_20464590_SNP [dm6]	G	A	6.761e^-5	0.812	INTRON CG12484
3L	2649575	3L_2649575_SNP [dm3] 3L_2649575_SNP [dm6]	A	G	6.774e^-5	0.812	NON_SYNONYMOUS_CODING CG1246 DOWNSTREAM Aats-pro
3L	7278223	3L_7278223_SNP [dm3] 3L_7285123_SNP [dm6]	T	G	6.779e^-5	0.812	UTR_5_PRIME unc-13-4A	TF binding site mE1_TFBS_cad
3R	13361960	3R_13361960_SNP [dm3] 3R_17536238_SNP [dm6]	C	T	6.807e^-5	0.812	SYNONYMOUS_CODING P5cr-2 UTR_5_PRIME P5cr-2 DOWNSTREAM l_3_07882	TF binding site mE1_TFBS_sens
2R	17919986	2R_17919986_SNP [dm3] 2R_22032481_SNP [dm6]	T	C	6.811e^-5	0.812	INTRON CG34370
2R	2425778	2R_2425778_SNP [dm3] 2R_6538273_SNP [dm6]	T	C	6.835e^-5	0.812	INTRON jing
3L	2649565	3L_2649565_SNP [dm3] 3L_2649565_SNP [dm6]	A	G	6.836e^-5	0.812	SYNONYMOUS_CODING CG1246 DOWNSTREAM Aats-pro
2R	17919988	2R_17919988_SNP [dm3] 2R_22032483_SNP [dm6]	T	C	6.948e^-5	0.812	INTRON CG34370
3L	332490	3L_332490_SNP [dm3] 3L_332490_SNP [dm6]	C	A	6.953e^-5	0.812	UPSTREAM mthl9 DOWNSTREAM mthl10 INTRON Ptpmeg	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	10044489	3R_10044489_SNP [dm3] 3R_14218767_SNP [dm6]	T	G	6.985e^-5	0.812	UPSTREAM CG9649 INTRON CG31326
3L	1416965	3L_1416965_SNP [dm3] 3L_1416965_SNP [dm6]	C	T	7.016e^-5	0.812	SYNONYMOUS_CODING FucTD INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	12134608	3R_12134608_SNP [dm3] 3R_16308886_SNP [dm6]	C	T	7.125e^-5	0.812	DOWNSTREAM Zip89B INTERGENIC
3R	11859120	3R_11859120_SNP [dm3] 3R_16033398_SNP [dm6]	G	T	7.182e^-5	0.812	INTRON pnr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	21081260	X_21081260_SNP [dm3] X_21210233_SNP [dm6]	G	T	7.199e^-5	0.812	INTRON CG32521
X	13258169	X_13258169_SNP [dm3] X_13364136_SNP [dm6]	A	G	7.225e^-5	0.812	NON_SYNONYMOUS_CODING Syt12	TF binding site BDTNP1_TFBS_sna
3R	12178543	3R_12178543_SNP [dm3] 3R_16352821_SNP [dm6]	T	C	7.292e^-5	0.812	INTRON CG10311
3L	6727199	3L_6727199_SNP [dm3] 3L_6734099_SNP [dm6]	C	T	7.307e^-5	0.812	SYNONYMOUS_CODING dikar	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15498201	2L_15498201_SNP [dm3] 2L_15498201_SNP [dm6]	T	G	7.386e^-5	0.812	UPSTREAM lace INTERGENIC	TF binding site mE1_TFBS_sens
2L	1789310	2L_1789310_SNP [dm3] 2L_1789310_SNP [dm6]	G	C	7.399e^-5	0.812	INTRON Gr22d
3L	2649550	3L_2649550_SNP [dm3] 3L_2649550_SNP [dm6]	G	T	7.418e^-5	0.812	SYNONYMOUS_CODING CG1246 DOWNSTREAM Aats-pro
3R	10054017	3R_10054017_SNP [dm3] 3R_14228295_SNP [dm6]	G	A	7.505e^-5	0.812	NON_SYNONYMOUS_CODING CG9624
2L	3464359	2L_3464359_SNP [dm3] 2L_3464359_SNP [dm6]	T	C	7.610e^-5	0.812	SYNONYMOUS_CODING msl-2 UPSTREAM mir-4971	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	8429011	3R_8429011_SNP [dm3] 3R_12603289_SNP [dm6]	A	G	7.639e^-5	0.812	INTERGENIC
3R	11635429	3R_11635429_SNP [dm3] 3R_15809707_SNP [dm6]	T	G	7.645e^-5	0.812	UPSTREAM alpha-Man-IIb INTRON alpha-Man-IIb
3L	16074684	3L_16074684_SNP [dm3] 3L_16081584_SNP [dm6]	G	A	7.678e^-5	0.812	UTR_3_PRIME Mbs UPSTREAM CG33258 DOWNSTREAM Mbs
3L	11673593	3L_11673593_SNP [dm3] 3L_11680493_SNP [dm6]	T	C	7.689e^-5	0.812	UPSTREAM CG32085 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8809467	2L_8809467_INS [dm3] 2L_8809467_INS [dm6]	C	CC	7.714e^-5	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2R	2667867	2R_2667867_SNP [dm3] 2R_6780362_SNP [dm6]	T	C	7.754e^-5	0.812	SYNONYMOUS_CODING Cyp6a2 INTRON Epac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	580879	3L_580879_SNP [dm3] 3L_580879_SNP [dm6]	C	A	7.768e^-5	0.812	UTR_3_PRIME hipk UPSTREAM Ppm1
2R	16566875	2R_16566875_SNP [dm3] 2R_20679370_SNP [dm6]	T	A	7.820e^-5	0.812	INTERGENIC
3L	16072598	3L_16072598_SNP [dm3] 3L_16079498_SNP [dm6]	G	A	7.831e^-5	0.812	UTR_3_PRIME Mbs INTRON Mbs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8477135	3R_8477135_SNP [dm3] 3R_12651413_SNP [dm6]	A	G	7.958e^-5	0.812	SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_sens
3R	22032681	3R_22032681_SNP [dm3] 3R_26206959_SNP [dm6]	G	A	7.983e^-5	0.812	INTRON CR44320
2R	13557704	2R_13557704_SNP [dm3] 2R_17670199_SNP [dm6]	G	A	7.985e^-5	0.812	SYNONYMOUS_CODING CG30109 UPSTREAM CR44404 DOWNSTREAM eIF3-S8 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	9562194	2L_9562194_SNP [dm3] 2L_9562194_SNP [dm6]	T	C	8.060e^-5	0.812	INTRON jp
2R	14366556	2R_14366556_SNP [dm3] 2R_18479051_SNP [dm6]	G	C	8.077e^-5	0.812	INTRON CG30116
2L	15074780	2L_15074780_DEL [dm3] 2L_15074780_DEL [dm6]	TCT	T	8.103e^-5	0.812	UTR_5_PRIME CG15270 DOWNSTREAM vas
2L	3670247	2L_3670247_SNP [dm3] 2L_3670247_SNP [dm6]	G	A	8.171e^-5	0.812	SYNONYMOUS_CODING Sfp24Bc UPSTREAM Sfp24Bb INTRON CG34340
X	10196166	X_10196166_SNP [dm3] X_10302133_SNP [dm6]	G	A	8.202e^-5	0.812	INTRON alpha-Man-I
3L	10898512	3L_10898512_SNP [dm3] 3L_10905412_SNP [dm6]	G	A	8.317e^-5	0.812	INTERGENIC
X	19283330	X_19283330_SNP [dm3] X_19389297_SNP [dm6]	T	G	8.331e^-5	0.812	INTRON kek5
X	7064106	X_7064106_SNP [dm3] X_7170073_SNP [dm6]	A	T	8.340e^-5	0.812	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	2735393	2L_2735393_SNP [dm3] 2L_2735393_SNP [dm6]	C	A	8.352e^-5	0.812	UPSTREAM CG31689 INTRON CG31689
X	14077376	X_14077376_SNP [dm3] X_14183343_SNP [dm6]	C	T	8.425e^-5	0.812	DOWNSTREAM CG11584 INTERGENIC
X	12940336	X_12940336_SNP [dm3] X_13046303_SNP [dm6]	C	T	8.443e^-5	0.812	INTRON rad
3R	18478788	3R_18478788_SNP [dm3] 3R_22653066_SNP [dm6]	G	A	8.462e^-5	0.812	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21962090	2L_21962090_SNP [dm3] 2L_21962090_SNP [dm6]	A	G	8.531e^-5	0.812	INTERGENIC
2L	11144462	2L_11144462_SNP [dm3] 2L_11144462_SNP [dm6]	C	T	8.603e^-5	0.812	DOWNSTREAM CG31867 INTRON Gyc32E	TF binding site mE1_TFBS_cad
2R	2686906	2R_2686906_SNP [dm3] 2R_6799401_SNP [dm6]	A	T	8.630e^-5	0.812	UPSTREAM Epac INTERGENIC
3R	14388587	3R_14388587_SNP [dm3] 3R_18562865_SNP [dm6]	T	G	8.652e^-5	0.812	INTERGENIC
3R	23441415	3R_23441415_SNP [dm3] 3R_27615693_SNP [dm6]	A	C	8.667e^-5	0.812	INTRON Tusp
3R	19475675	3R_19475675_SNP [dm3] 3R_23649953_SNP [dm6]	A	G	8.722e^-5	0.812	INTRON CG31145
2L	1330028	2L_1330028_INS [dm3] 2L_1330028_INS [dm6]	C	CTTCT	8.732e^-5	0.812	DOWNSTREAM a5 INTERGENIC
2L	21929390	2L_21929390_SNP [dm3] 2L_21929390_SNP [dm6]	G	C	8.741e^-5	0.812	UPSTREAM CR45334 INTERGENIC
2R	20909411	2R_20909411_SNP [dm3] 2R_25021888_SNP [dm6]	T	A	8.934e^-5	0.812	INTRON uzip
2R	16951731	2R_16951731_SNP [dm3] 2R_21064226_SNP [dm6]	C	T	8.960e^-5	0.812	SYNONYMOUS_CODING Cht12
X	12021863	X_12021863_SNP [dm3] X_12127830_SNP [dm6]	G	A	8.986e^-5	0.812	UPSTREAM Ten-a INTRON Ten-a
2L	19850740	2L_19850740_SNP [dm3] 2L_19850740_SNP [dm6]	T	C	9.128e^-5	0.812	INTRON sick
3L	9115616	3L_9115616_SNP [dm3] 3L_9122516_SNP [dm6]	G	T	9.167e^-5	0.812	INTRON bol
X	12021978	X_12021978_SNP [dm3] X_12127945_SNP [dm6]	A	G	9.230e^-5	0.812	UPSTREAM Ten-a INTRON Ten-a
2R	17827767	2R_17827767_SNP [dm3] 2R_21940262_SNP [dm6]	T	A	9.295e^-5	0.812	INTRON Fili
2R	11467331	2R_11467331_SNP [dm3] 2R_15579826_SNP [dm6]	G	T	9.344e^-5	0.812	INTERGENIC
3R	9268267	3R_9268267_SNP [dm3] 3R_13442545_SNP [dm6]	C	T	9.424e^-5	0.812	DOWNSTREAM CR45679 INTERGENIC
3R	13139061	3R_13139061_SNP [dm3] 3R_17313339_SNP [dm6]	G	T	9.537e^-5	0.812	INTERGENIC
2L	19239630	2L_19239630_DEL [dm3] 2L_19239630_DEL [dm6]	TATTT	T	9.567e^-5	0.812	INTERGENIC
2L	1962489	2L_1962489_SNP [dm3] 2L_1962489_SNP [dm6]	C	G	9.582e^-5	0.812	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7278942	3R_7278942_SNP [dm3] 3R_11453220_SNP [dm6]	A	G	9.592e^-5	0.812	SYNONYMOUS_CODING PGRP-LB INTRON CG17230	TF binding site mE1_TFBS_chinmo
2R	20994370	2R_20994370_DEL [dm3] 2R_25106847_DEL [dm6]	GCGGGTTAGTCG...	G	9.600e^-5	0.812	INTRON lov
3R	14418318	3R_14418318_INS [dm3] 3R_18592596_INS [dm6]	T	TACAT	9.637e^-5	0.812	DOWNSTREAM CG14304 INTRON qin	TF binding site mE1_TFBS_cad
3L	11586769	3L_11586769_SNP [dm3] 3L_11593669_SNP [dm6]	G	T	9.654e^-5	0.812	UPSTREAM CR45442 & 1 other EXON CR45671 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	1330032	2L_1330032_INS [dm3] 2L_1330032_INS [dm6]	T	TA	9.683e^-5	0.812	DOWNSTREAM a5 INTERGENIC
2R	18014566	2R_18014566_SNP [dm3] 2R_22127061_SNP [dm6]	C	A	9.739e^-5	0.812	SYNONYMOUS_CODING GM130 UPSTREAM NtR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13917721	2R_13917721_SNP [dm3] 2R_18030216_SNP [dm6]	C	T	9.746e^-5	0.812	INTERGENIC
3R	12873865	3R_12873865_SNP [dm3] 3R_17048143_SNP [dm6]	T	A	9.794e^-5	0.812	UTR_3_PRIME Patr-1 DOWNSTREAM Patr-1	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	1597761	2L_1597761_SNP [dm3] 2L_1597761_SNP [dm6]	T	C	9.835e^-5	0.812	INTRON haf & 1 other
3R	10122680	3R_10122680_SNP [dm3] 3R_14296958_SNP [dm6]	T	A	9.837e^-5	0.812	INTRON CG12207
3L	5130756	3L_5130756_SNP [dm3] 3L_5137656_SNP [dm6]	G	T	9.897e^-5	0.812	SYNONYMOUS_CODING CG4611 DOWNSTREAM Prpk	TF binding site mE1_TFBS_chinmo
3L	6791087	3L_6791087_INS [dm3] 3L_6797987_INS [dm6]	T	TT	9.953e^-5	0.812	INTERGENIC
2L	18464128	2L_18464128_SNP [dm3] 2L_18464128_SNP [dm6]	T	A	9.953e^-5	0.812	INTRON let-7-C
2R	18063875	2R_18063875_SNP [dm3] 2R_22176370_SNP [dm6]	G	A	1.009e^-4	0.812	SYNONYMOUS_CODING CG6758 EXON CR45151	TF binding site mE1_TFBS_chinmo
2L	13079589	2L_13079589_SNP [dm3] 2L_13079589_SNP [dm6]	C	T	1.010e^-4	0.812	INTERGENIC
2R	8245732	2R_8245732_SNP [dm3] 2R_12358227_SNP [dm6]	T	A	1.014e^-4	0.812	INTRON CG30049
3R	11635440	3R_11635440_SNP [dm3] 3R_15809718_SNP [dm6]	C	T	1.022e^-4	0.812	UPSTREAM alpha-Man-IIb INTRON alpha-Man-IIb
2L	9282473	2L_9282473_SNP [dm3] 2L_9282473_SNP [dm6]	T	G	1.023e^-4	0.812	INTRON Ggamma30A
3R	15042374	3R_15042374_INS [dm3] 3R_19216652_INS [dm6]	T	TGT	1.024e^-4	0.812	UTR_3_PRIME vib
3L	16202260	3L_16202260_SNP [dm3] 3L_16209160_SNP [dm6]	A	C	1.026e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_cad
2R	3077080	2R_3077080_INS [dm3] 2R_7189575_INS [dm6]	G	GGCAG	1.045e^-4	0.812	INTRON pk
2R	15349409	2R_15349409_SNP [dm3] 2R_19461904_SNP [dm6]	C	T	1.050e^-4	0.812	UPSTREAM par-1 INTRON par-1
2L	12171683	2L_12171683_SNP [dm3] 2L_12171683_SNP [dm6]	A	G	1.056e^-4	0.812	UTR_3_PRIME CG6583 DOWNSTREAM CG17217
2L	19239654	2L_19239654_SNP [dm3] 2L_19239654_SNP [dm6]	T	G	1.087e^-4	0.812	INTERGENIC
X	3247070	X_3247070_SNP [dm3] X_3353037_SNP [dm6]	T	C	1.087e^-4	0.812	INTERGENIC	regulatory region REDfly_CRMs
2L	21914973	2L_21914973_SNP [dm3] 2L_21914973_SNP [dm6]	T	C	1.091e^-4	0.812	SPLICE_SITE_REGION CG31600 INTRON CG31600
2R	17919893	2R_17919893_SNP [dm3] 2R_22032388_SNP [dm6]	T	C	1.097e^-4	0.812	INTRON CG34370
2R	17827341	2R_17827341_SNP [dm3] 2R_21939836_SNP [dm6]	C	T	1.104e^-4	0.812	INTRON Fili
3R	11396568	3R_11396568_INS [dm3] 3R_15570846_INS [dm6]	T	TT	1.109e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	3731073	3L_3731073_SNP [dm3] 3L_3731073_SNP [dm6]	A	C	1.111e^-4	0.812	INTRON CG32264
3L	6994029	3L_6994029_SNP [dm3] 3L_7000929_SNP [dm6]	G	A	1.112e^-4	0.812	INTRON Mp
2L	18328673	2L_18328673_SNP [dm3] 2L_18328673_SNP [dm6]	G	C	1.120e^-4	0.812	INTRON Fas3
2L	9274936	2L_9274936_SNP [dm3] 2L_9274936_SNP [dm6]	C	A	1.123e^-4	0.812	INTRON Ggamma30A
3R	16294550	3R_16294550_SNP [dm3] 3R_20468828_SNP [dm6]	C	A	1.128e^-4	0.812	INTRON Gfrl
3L	2948490	3L_2948490_SNP [dm3] 3L_2948490_SNP [dm6]	C	T	1.139e^-4	0.812	SYNONYMOUS_CODING Shab
2R	2425819	2R_2425819_SNP [dm3] 2R_6538314_SNP [dm6]	T	G	1.140e^-4	0.812	INTRON jing
2R	13415564	2R_13415564_SNP [dm3] 2R_17528059_SNP [dm6]	G	A	1.144e^-4	0.812	SYNONYMOUS_CODING Patronin
2R	16794328	2R_16794328_SNP [dm3] 2R_20906823_SNP [dm6]	G	A	1.148e^-4	0.812	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
2R	16794339	2R_16794339_SNP [dm3] 2R_20906834_SNP [dm6]	T	A	1.148e^-4	0.812	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
2L	5560492	2L_5560492_SNP [dm3] 2L_5560492_SNP [dm6]	C	T	1.162e^-4	0.812	SYNONYMOUS_CODING GluRIIB
3R	18478815	3R_18478815_SNP [dm3] 3R_22653093_SNP [dm6]	T	C	1.165e^-4	0.812	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	10895007	X_10895007_SNP [dm3] X_11000974_SNP [dm6]	A	G	1.184e^-4	0.812	INTRON CG42339
2R	18456133	2R_18456133_SNP [dm3] 2R_22568628_SNP [dm6]	G	T	1.187e^-4	0.812	INTRON dnr1	TF binding site mE1_TFBS_Trl
2R	20994546	2R_20994546_SNP [dm3] 2R_25107023_SNP [dm6]	A	T	1.188e^-4	0.812	INTRON lov	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_Med
2R	16794266	2R_16794266_SNP [dm3] 2R_20906761_SNP [dm6]	C	G	1.188e^-4	0.812	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
2R	16794363	2R_16794363_SNP [dm3] 2R_20906858_SNP [dm6]	T	A	1.188e^-4	0.812	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
2R	16794370	2R_16794370_SNP [dm3] 2R_20906865_SNP [dm6]	C	T	1.188e^-4	0.812	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
2R	16794579	2R_16794579_SNP [dm3] 2R_20907074_SNP [dm6]	T	A	1.188e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	12035536	3R_12035536_SNP [dm3] 3R_16209814_SNP [dm6]	C	T	1.189e^-4	0.812	UPSTREAM CR45639 & 1 other DOWNSTREAM CR45640 EXON CR45637
2L	21916384	2L_21916384_SNP [dm3] 2L_21916384_SNP [dm6]	C	G	1.193e^-4	0.812	UTR_5_PRIME CG11634
3R	13094958	3R_13094958_SNP [dm3] 3R_17269236_SNP [dm6]	C	T	1.193e^-4	0.812	INTERGENIC
2L	15083918	2L_15083918_SNP [dm3] 2L_15083918_SNP [dm6]	A	T	1.194e^-4	0.812	INTRON CG15270
2L	17576850	2L_17576850_SNP [dm3] 2L_17576850_SNP [dm6]	G	A	1.196e^-4	0.812	INTERGENIC
2L	9568637	2L_9568637_SNP [dm3] 2L_9568637_SNP [dm6]	A	G	1.200e^-4	0.812	UPSTREAM CG3838 EXON CR44149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	10270903	3R_10270903_SNP [dm3] 3R_14445181_SNP [dm6]	C	T	1.201e^-4	0.812	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2381060	3R_2381060_SNP [dm3] 3R_6555338_SNP [dm6]	C	A	1.205e^-4	0.812	INTRON dpr11
2R	11467370	2R_11467370_INS [dm3] 2R_15579865_INS [dm6]	A	AAGTGAA	1.206e^-4	0.812	INTERGENIC
2R	13886127	2R_13886127_SNP [dm3] 2R_17998622_SNP [dm6]	A	T	1.218e^-4	0.812	INTRON dpr13
X	12718968	X_12718968_SNP [dm3] X_12824935_SNP [dm6]	A	G	1.231e^-4	0.812	INTRON Pde9
2R	17673673	2R_17673673_INS [dm3] 2R_21786168_INS [dm6]	A	AATGTGA	1.231e^-4	0.812	INTERGENIC
2R	6916127	2R_6916127_INS [dm3] 2R_11028622_INS [dm6]	T	TTCCAGCTTGCTAGCTC...	1.234e^-4	0.812	INTRON luna
3R	11396449	3R_11396449_SNP [dm3] 3R_15570727_SNP [dm6]	C	T	1.237e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	24708824	3R_24708824_SNP [dm3] 3R_28883102_SNP [dm6]	T	C	1.237e^-4	0.812	UPSTREAM CG14526 DOWNSTREAM CG14527 INTRON CG33203
3R	23441360	3R_23441360_SNP [dm3] 3R_27615638_SNP [dm6]	T	G	1.238e^-4	0.812	INTRON Tusp
2L	8347433	2L_8347433_SNP [dm3] 2L_8347433_SNP [dm6]	A	G	1.248e^-4	0.812	INTRON CG7778
3R	12189310	3R_12189310_DEL [dm3] 3R_16363588_DEL [dm6]	ACTTA	A	1.249e^-4	0.812	INTRON CG14880	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	6076463	3L_6076463_SNP [dm3] 3L_6083363_SNP [dm6]	C	G	1.252e^-4	0.812	DOWNSTREAM CG6619 INTRON CG13293	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1243265	3L_1243265_SNP [dm3] 3L_1243265_SNP [dm6]	C	T	1.255e^-4	0.812	SYNONYMOUS_CODING Klp61F
2R	21019534	2R_21019534_SNP [dm3] 2R_25132011_SNP [dm6]	A	T	1.259e^-4	0.812	INTRON lov	TF binding site mE1_TFBS_Kr
3R	14388580	3R_14388580_SNP [dm3] 3R_18562858_SNP [dm6]	A	G	1.261e^-4	0.812	INTERGENIC
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	1.266e^-4	0.812	INTRON dnc
2R	18993657	2R_18993657_SNP [dm3] 2R_23106134_SNP [dm6]	T	C	1.277e^-4	0.812	UPSTREAM Gr59d INTERGENIC
3R	11859578	3R_11859578_SNP [dm3] 3R_16033856_SNP [dm6]	C	T	1.279e^-4	0.812	UPSTREAM pnr INTRON pnr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19964462	2L_19964462_SNP [dm3] 2L_19964462_SNP [dm6]	C	T	1.284e^-4	0.812	NON_SYNONYMOUS_CODING CG10680 UPSTREAM CR45701 DOWNSTREAM CG16772
2L	12997179	2L_12997179_SNP [dm3] 2L_12997179_SNP [dm6]	C	T	1.290e^-4	0.812	INTRON CG12404
2L	19286680	2L_19286680_SNP [dm3] 2L_19286680_SNP [dm6]	G	A	1.292e^-4	0.812	INTERGENIC
3R	11859175	3R_11859175_SNP [dm3] 3R_16033453_SNP [dm6]	A	T	1.298e^-4	0.812	INTRON pnr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	16466402	2R_16466402_DEL [dm3] 2R_20578897_DEL [dm6]	GACTCAG	G	1.304e^-4	0.812	INTRON qsm
3L	16068104	3L_16068104_SNP [dm3] 3L_16075004_SNP [dm6]	T	G	1.310e^-4	0.812	INTRON Mbs	TF binding site BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2R	14469945	2R_14469945_SNP [dm3] 2R_18582440_SNP [dm6]	T	C	1.310e^-4	0.812	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	20889947	2R_20889947_SNP [dm3] 2R_25002424_SNP [dm6]	A	G	1.312e^-4	0.812	SYNONYMOUS_CODING zip
2L	21802210	2L_21802210_SNP [dm3] 2L_21802210_SNP [dm6]	G	A	1.313e^-4	0.812	INTERGENIC
2L	17138834	2L_17138834_DEL [dm3] 2L_17138834_DEL [dm6]	AA	A	1.328e^-4	0.812	INTRON beat-IIIa & 1 other
2L	19315003	2L_19315003_SNP [dm3] 2L_19315003_SNP [dm6]	A	G	1.332e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7469391	3L_7469391_SNP [dm3] 3L_7476291_SNP [dm6]	T	C	1.343e^-4	0.812	DOWNSTREAM CG43292 INTERGENIC
2L	21879086	2L_21879086_SNP [dm3] 2L_21879086_SNP [dm6]	C	G	1.345e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14009788	2L_14009788_SNP [dm3] 2L_14009788_SNP [dm6]	A	T	1.345e^-4	0.812	DOWNSTREAM CG42692 & 1 other INTERGENIC
3R	14695537	3R_14695537_SNP [dm3] 3R_18869815_SNP [dm6]	C	T	1.349e^-4	0.812	INTERGENIC
2R	19821847	2R_19821847_SNP [dm3] 2R_23934324_SNP [dm6]	A	T	1.354e^-4	0.812	UPSTREAM Ca-P60A INTRON Ca-P60A	TF binding site mE1_TFBS_HSA
2R	13415363	2R_13415363_SNP [dm3] 2R_17527858_SNP [dm6]	G	C	1.355e^-4	0.812	SYNONYMOUS_CODING Patronin	TF binding site mE1_TFBS_HSA
3L	8590127	3L_8590127_SNP [dm3] 3L_8597027_SNP [dm6]	C	G	1.362e^-4	0.812	SYNONYMOUS_CODING CG43078 DOWNSTREAM CG43078	TF binding site mE1_TFBS_chinmo
2R	17725920	2R_17725920_SNP [dm3] 2R_21838415_SNP [dm6]	C	T	1.362e^-4	0.812	SYNONYMOUS_CODING CG4372
2R	20912303	2R_20912303_SNP [dm3] 2R_25024780_SNP [dm6]	T	C	1.363e^-4	0.812	INTRON uzip
X	2254928	X_2254928_DEL [dm3] X_2360895_DEL [dm6]	TT	T	1.363e^-4	0.812	INTRON ptr
3R	19356833	3R_19356833_SNP [dm3] 3R_23531111_SNP [dm6]	T	G	1.365e^-4	0.812	UPSTREAM CG10175 INTERGENIC
2L	16619032	2L_16619032_SNP [dm3] 2L_16619032_SNP [dm6]	A	C	1.369e^-4	0.812	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	6410101	2L_6410101_DEL [dm3] 2L_6410101_DEL [dm6]	CAACCAAGTGCTTG...	C	1.373e^-4	0.812	INTRON CG42368
X	18928255	X_18928255_SNP [dm3] X_19034222_SNP [dm6]	T	C	1.387e^-4	0.812	INTERGENIC
2R	14471638	2R_14471638_SNP [dm3] 2R_18584133_SNP [dm6]	A	G	1.397e^-4	0.812	UPSTREAM GEFmeso INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12274966	2L_12274966_SNP [dm3] 2L_12274966_SNP [dm6]	G	T	1.409e^-4	0.812	INTRON aret
2R	8360529	2R_8360529_SNP [dm3] 2R_12473024_SNP [dm6]	T	G	1.411e^-4	0.812	SYNONYMOUS_CODING CG8550
2R	16796216	2R_16796216_SNP [dm3] 2R_20908711_SNP [dm6]	C	T	1.412e^-4	0.812	UPSTREAM CG9235 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3387211	2L_3387211_SNP [dm3] 2L_3387211_SNP [dm6]	G	A	1.424e^-4	0.812	DOWNSTREAM Sfp23F & 1 other EXON CR45301
3L	11034764	3L_11034764_SNP [dm3] 3L_11041664_SNP [dm6]	A	C	1.441e^-4	0.812	INTRON CG43693	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3R	16294815	3R_16294815_SNP [dm3] 3R_20469093_SNP [dm6]	G	A	1.441e^-4	0.812	INTRON Gfrl
3L	5598928	3L_5598928_SNP [dm3] 3L_5605828_SNP [dm6]	G	C	1.461e^-4	0.812	SYNONYMOUS_CODING mthl2	TF binding site mE1_TFBS_sens
X	14095681	X_14095681_SNP [dm3] X_14201648_SNP [dm6]	G	A	1.467e^-4	0.812	SYNONYMOUS_CODING l_1_G0007 DOWNSTREAM CG11590	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13605161	2L_13605161_SNP [dm3] 2L_13605161_SNP [dm6]	T	A	1.468e^-4	0.812	INTRON kuz
3R	27209933	3R_27209933_SNP [dm3] 3R_31384211_SNP [dm6]	T	C	1.468e^-4	0.812	UPSTREAM CG1607 INTRON CG1607	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	16973786	2R_16973786_SNP [dm3] 2R_21086281_SNP [dm6]	C	A	1.470e^-4	0.812	SYNONYMOUS_CODING Treh	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	17920187	2R_17920187_SNP [dm3] 2R_22032682_SNP [dm6]	G	T	1.474e^-4	0.812	INTRON CG34370
3R	7278969	3R_7278969_SNP [dm3] 3R_11453247_SNP [dm6]	A	G	1.475e^-4	0.812	SYNONYMOUS_CODING PGRP-LB INTRON CG17230	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11584053	3L_11584053_SNP [dm3] 3L_11590953_SNP [dm6]	T	C	1.477e^-4	0.812	SYNONYMOUS_CODING CG33268 DOWNSTREAM CG7377
2R	17606551	2R_17606551_SNP [dm3] 2R_21719046_SNP [dm6]	G	T	1.483e^-4	0.812	DOWNSTREAM CG30398 INTRON Tango11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
3L	6568684	3L_6568684_SNP [dm3] 3L_6575584_SNP [dm6]	T	C	1.486e^-4	0.812	INTRON CG18769 & 1 other
2R	586846	2R_586846_SNP [dm3] 2R_4699341_SNP [dm6]	A	T	1.488e^-4	0.812	INTRON Nipped-B
3L	8802913	3L_8802913_SNP [dm3] 3L_8809813_SNP [dm6]	A	T	1.494e^-4	0.812	UPSTREAM CG13309 DOWNSTREAM CG13308 INTERGENIC
3L	1306962	3L_1306962_SNP [dm3] 3L_1306962_SNP [dm6]	T	C	1.495e^-4	0.812	SYNONYMOUS_CODING CG2277 UPSTREAM CG2469	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17919959	2R_17919959_SNP [dm3] 2R_22032454_SNP [dm6]	T	C	1.496e^-4	0.812	INTRON CG34370
2R	20771841	2R_20771841_SNP [dm3] 2R_24884318_SNP [dm6]	A	G	1.500e^-4	0.812	UTR_3_PRIME NKAIN INTRON NKAIN
3L	3266110	3L_3266110_SNP [dm3] 3L_3266110_SNP [dm6]	T	C	1.508e^-4	0.812	INTRON ckd	TF binding site BDTNP1_TFBS_dl
3L	11487906	3L_11487906_SNP [dm3] 3L_11494806_SNP [dm6]	A	C	1.515e^-4	0.812	INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3078373	3L_3078373_SNP [dm3] 3L_3078373_SNP [dm6]	G	C	1.549e^-4	0.812	INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	20872329	2R_20872329_SNP [dm3] 2R_24984806_SNP [dm6]	T	G	1.553e^-4	0.812	UTR_5_PRIME emp UPSTREAM emp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	20404415	2L_20404415_DEL [dm3] 2L_20404415_DEL [dm6]	GA	G	1.556e^-4	0.812	INTRON CG10947
2L	21938811	2L_21938811_SNP [dm3] 2L_21938811_SNP [dm6]	A	T	1.557e^-4	0.812	INTERGENIC
3L	3090995	3L_3090995_SNP [dm3] 3L_3090995_SNP [dm6]	C	T	1.560e^-4	0.812	UTR_3_PRIME Cht7 DOWNSTREAM CG11486 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	1308320	3L_1308320_SNP [dm3] 3L_1308320_SNP [dm6]	A	G	1.560e^-4	0.812	SYNONYMOUS_CODING CG2469 UPSTREAM CG2277	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	21906528	2L_21906528_SNP [dm3] 2L_21906528_SNP [dm6]	A	G	1.563e^-4	0.812	NON_SYNONYMOUS_CODING CG1428	TF binding site mE1_TFBS_cad
2L	1330037	2L_1330037_INS [dm3] 2L_1330037_INS [dm6]	A	AG	1.563e^-4	0.812	DOWNSTREAM a5 INTERGENIC
2L	12796660	2L_12796660_DEL [dm3] 2L_12796660_DEL [dm6]	ACACACA	A	1.570e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	1449022	3L_1449022_SNP [dm3] 3L_1449022_SNP [dm6]	G	A	1.570e^-4	0.812	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc
3R	11636576	3R_11636576_SNP [dm3] 3R_15810854_SNP [dm6]	C	T	1.571e^-4	0.812	UTR_5_PRIME alpha-Man-IIb DOWNSTREAM CR45211 INTRON alpha-Man-IIb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4266695	3R_4266695_SNP [dm3] 3R_8440973_SNP [dm6]	G	A	1.574e^-4	0.812	INTRON CG45263
X	12021975	X_12021975_SNP [dm3] X_12127942_SNP [dm6]	G	A	1.580e^-4	0.812	UPSTREAM Ten-a INTRON Ten-a
X	13258187	X_13258187_SNP [dm3] X_13364154_SNP [dm6]	C	G	1.581e^-4	0.812	NON_SYNONYMOUS_CODING Syt12
2R	10837352	2R_10837352_SNP [dm3] 2R_14949847_SNP [dm6]	A	G	1.595e^-4	0.812	UPSTREAM aPKC INTRON aPKC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	20909679	2R_20909679_SNP [dm3] 2R_25022156_SNP [dm6]	A	T	1.617e^-4	0.812	INTRON uzip
3R	7353515	3R_7353515_SNP [dm3] 3R_11527793_SNP [dm6]	T	A	1.620e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12178451	3R_12178451_SNP [dm3] 3R_16352729_SNP [dm6]	C	T	1.628e^-4	0.812	INTRON CG10311
3L	9092136	3L_9092136_SNP [dm3] 3L_9099036_SNP [dm6]	A	G	1.638e^-4	0.812	UTR_3_PRIME bol
2R	2962539	2R_2962539_SNP [dm3] 2R_7075034_SNP [dm6]	G	T	1.640e^-4	0.812	UPSTREAM CG12831 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	10537361	2R_10537361_SNP [dm3] 2R_14649856_SNP [dm6]	T	A	1.645e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13106773	3R_13106773_SNP [dm3] 3R_17281051_SNP [dm6]	T	C	1.648e^-4	0.812	INTERGENIC
2L	12246331	2L_12246331_SNP [dm3] 2L_12246331_SNP [dm6]	A	G	1.662e^-4	0.812	INTRON aret
2L	17984164	2L_17984164_SNP [dm3] 2L_17984164_SNP [dm6]	C	A	1.668e^-4	0.812	INTERGENIC
2R	6141472	2R_6141472_SNP [dm3] 2R_10253967_SNP [dm6]	C	T	1.675e^-4	0.812	SYNONYMOUS_CODING CG12913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	4268919	3R_4268919_SNP [dm3] 3R_8443197_SNP [dm6]	A	G	1.679e^-4	0.812	INTRON CG45263	TF binding site mE1_TFBS_cad
2L	19239472	2L_19239472_SNP [dm3] 2L_19239472_SNP [dm6]	C	T	1.682e^-4	0.812	INTERGENIC
3L	9961388	3L_9961388_SNP [dm3] 3L_9968288_SNP [dm6]	C	T	1.684e^-4	0.812	NON_SYNONYMOUS_CODING CG6685 UPSTREAM Nc DOWNSTREAM CG34356	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	20744843	3R_20744843_SNP [dm3] 3R_24919121_SNP [dm6]	T	C	1.694e^-4	0.812	SYNONYMOUS_CODING CG11168	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11918432	3L_11918432_SNP [dm3] 3L_11925332_SNP [dm6]	C	G	1.694e^-4	0.812	UPSTREAM CG5718 INTRON CG44837	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18923425	X_18923425_SNP [dm3] X_19029392_SNP [dm6]	G	T	1.696e^-4	0.812	DOWNSTREAM CG43759 INTERGENIC
2R	20761533	2R_20761533_SNP [dm3] 2R_24874010_SNP [dm6]	T	C	1.701e^-4	0.812	SYNONYMOUS_CODING CG16896 DOWNSTREAM CG30423	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_sens
3R	20745145	3R_20745145_SNP [dm3] 3R_24919423_SNP [dm6]	T	C	1.713e^-4	0.812	SYNONYMOUS_CODING CG11168	TF binding site mE1_TFBS_chinmo
2R	17754772	2R_17754772_SNP [dm3] 2R_21867267_SNP [dm6]	C	A	1.721e^-4	0.812	UPSTREAM comr INTERGENIC
2L	15083917	2L_15083917_SNP [dm3] 2L_15083917_SNP [dm6]	A	T	1.721e^-4	0.812	INTRON CG15270
3L	10842704	3L_10842704_SNP [dm3] 3L_10849604_SNP [dm6]	G	T	1.723e^-4	0.812	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	5125923	2L_5125923_SNP [dm3] 2L_5125923_SNP [dm6]	C	A	1.726e^-4	0.812	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad
3R	12162389	3R_12162389_SNP [dm3] 3R_16336667_SNP [dm6]	T	G	1.729e^-4	0.812	INTRON Sulf1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	20822789	2R_20822789_SNP [dm3] 2R_24935266_SNP [dm6]	G	T	1.747e^-4	0.812	INTRON CG30427	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	10898498	3L_10898498_SNP [dm3] 3L_10905398_SNP [dm6]	G	A	1.750e^-4	0.812	INTERGENIC
3L	19019620	3L_19019620_SNP [dm3] 3L_19026520_SNP [dm6]	A	C	1.751e^-4	0.812	INTRON nkd
2L	17576547	2L_17576547_SNP [dm3] 2L_17576547_SNP [dm6]	C	T	1.753e^-4	0.812	INTERGENIC
3R	9605775	3R_9605775_SNP [dm3] 3R_13780053_SNP [dm6]	G	A	1.755e^-4	0.812	SYNONYMOUS_CODING CG9288 UTR_3_PRIME CG42375 UPSTREAM CG9286 DOWNSTREAM CG9297	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11635404	3R_11635404_SNP [dm3] 3R_15809682_SNP [dm6]	G	C	1.757e^-4	0.812	UPSTREAM alpha-Man-IIb INTRON alpha-Man-IIb
3R	11635468	3R_11635468_SNP [dm3] 3R_15809746_SNP [dm6]	A	C	1.757e^-4	0.812	UPSTREAM alpha-Man-IIb INTRON alpha-Man-IIb
3R	11635507	3R_11635507_SNP [dm3] 3R_15809785_SNP [dm6]	T	C	1.757e^-4	0.812	UPSTREAM alpha-Man-IIb INTRON alpha-Man-IIb
3R	15815309	3R_15815309_DEL [dm3] 3R_19989587_DEL [dm6]	TT	T	1.764e^-4	0.812	INTRON Hs6st
3L	8802526	3L_8802526_SNP [dm3] 3L_8809426_SNP [dm6]	A	G	1.770e^-4	0.812	UPSTREAM CG13309 DOWNSTREAM CG13308 INTERGENIC
2L	3756305	2L_3756305_SNP [dm3] 2L_3756305_SNP [dm6]	A	T	1.771e^-4	0.812	UPSTREAM CG43707 INTERGENIC
2L	21898696	2L_21898696_SNP [dm3] 2L_21898696_SNP [dm6]	T	A	1.783e^-4	0.812	UPSTREAM CG11629 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
3L	1010439	3L_1010439_SNP [dm3] 3L_1010439_SNP [dm6]	A	G	1.789e^-4	0.812	INTRON trio
3L	22140036	3L_22140036_SNP [dm3] 3L_22146936_SNP [dm6]	G	A	1.792e^-4	0.812	INTRON olf413
2R	16751702	2R_16751702_SNP [dm3] 2R_20864197_SNP [dm6]	T	C	1.809e^-4	0.812	INTRON CG15227
3R	8587847	3R_8587847_SNP [dm3] 3R_12762125_SNP [dm6]	A	C	1.812e^-4	0.812	INTRON beat-Vc
X	15155244	X_15155244_SNP [dm3] X_15261211_SNP [dm6]	G	T	1.813e^-4	0.812	INTERGENIC
3R	7280728	3R_7280728_SNP [dm3] 3R_11455006_SNP [dm6]	T	A	1.816e^-4	0.812	UPSTREAM PGRP-LB INTRON CG17230 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	7365940	3R_7365940_SNP [dm3] 3R_11540218_SNP [dm6]	C	T	1.818e^-4	0.812	INTRON dpr4
2R	8245731	2R_8245731_SNP [dm3] 2R_12358226_SNP [dm6]	A	T	1.819e^-4	0.812	INTRON CG30049
2R	16537615	2R_16537615_SNP [dm3] 2R_20650110_SNP [dm6]	A	T	1.821e^-4	0.812	INTRON Lrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	1317457	3L_1317457_SNP [dm3] 3L_1317457_SNP [dm6]	G	A	1.822e^-4	0.812	SYNONYMOUS_CODING CG9153	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13081471	2L_13081471_SNP [dm3] 2L_13081471_SNP [dm6]	T	C	1.825e^-4	0.812	INTERGENIC
3R	9902281	3R_9902281_SNP [dm3] 3R_14076559_SNP [dm6]	T	G	1.826e^-4	0.812	INTRON foxo
X	2380682	X_2380682_SNP [dm3] X_2486649_SNP [dm6]	G	T	1.831e^-4	0.812	INTRON trol
X	18645733	X_18645733_SNP [dm3] X_18751700_SNP [dm6]	C	A	1.832e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15556193	2R_15556193_SNP [dm3] 2R_19668688_SNP [dm6]	A	G	1.843e^-4	0.812	INTRON hrg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
3R	11634910	3R_11634910_SNP [dm3] 3R_15809188_SNP [dm6]	T	C	1.847e^-4	0.812	INTRON alpha-Man-IIb
X	16304342	X_16304342_SNP [dm3] X_16410309_SNP [dm6]	C	A	1.852e^-4	0.812	INTRON CG4301
2R	10578635	2R_10578635_SNP [dm3] 2R_14691130_SNP [dm6]	T	C	1.852e^-4	0.812	INTRON mspo
2L	1330034	2L_1330034_INS [dm3] 2L_1330034_INS [dm6]	G	GAAGC	1.853e^-4	0.812	DOWNSTREAM a5 INTERGENIC
X	9772816	X_9772816_SNP [dm3] X_9878783_SNP [dm6]	G	T	1.856e^-4	0.812	INTRON CG1468
X	717437	X_717437_SNP [dm3] X_823404_SNP [dm6]	C	A	1.865e^-4	0.812	INTRON CG43867
3R	13933485	3R_13933485_DEL [dm3] 3R_18107763_DEL [dm6]	GCG	G	1.872e^-4	0.812	UPSTREAM tRNA:CR31242 INTRON sr
3L	312104	3L_312104_SNP [dm3] 3L_312104_SNP [dm6]	C	T	1.876e^-4	0.812	UPSTREAM fwd INTRON fwd	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	2254909	X_2254909_DEL [dm3] X_2360876_DEL [dm6]	TTTT	T	1.882e^-4	0.812	INTRON ptr
2L	9571394	2L_9571394_SNP [dm3] 2L_9571394_SNP [dm6]	G	A	1.883e^-4	0.812	UTR_5_PRIME CG3838 INTRON CG3838
2R	14366555	2R_14366555_SNP [dm3] 2R_18479050_SNP [dm6]	A	G	1.886e^-4	0.812	INTRON CG30116
X	22360157	X_22360157_SNP [dm3] X_22958321_SNP [dm6]	A	T	1.892e^-4	0.812	DOWNSTREAM CG40486 EXON CR45502	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18645717	X_18645717_SNP [dm3] X_18751684_SNP [dm6]	G	T	1.897e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17316791	X_17316791_SNP [dm3] X_17422758_SNP [dm6]	A	C	1.906e^-4	0.812	UTR_3_PRIME CG12994 UPSTREAM CG8611 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	11708448	3L_11708448_SNP [dm3] 3L_11715348_SNP [dm6]	T	G	1.909e^-4	0.812	UPSTREAM CG14132 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	13094893	2R_13094893_SNP [dm3] 2R_17207388_SNP [dm6]	A	G	1.917e^-4	0.812	INTERGENIC
3L	2459801	3L_2459801_SNP [dm3] 3L_2459801_SNP [dm6]	C	T	1.920e^-4	0.812	SYNONYMOUS_CODING CG45186 UTR_5_PRIME CG45186
3L	9961340	3L_9961340_SNP [dm3] 3L_9968240_SNP [dm6]	C	T	1.927e^-4	0.812	NON_SYNONYMOUS_CODING CG6685 UPSTREAM Nc DOWNSTREAM CG34356	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	7617231	2R_7617231_SNP [dm3] 2R_11729726_SNP [dm6]	G	C	1.929e^-4	0.812	INTERGENIC
3L	6669047	3L_6669047_SNP [dm3] 3L_6675947_SNP [dm6]	G	C	1.936e^-4	0.812	INTERGENIC
3R	16905022	3R_16905022_SNP [dm3] 3R_21079300_SNP [dm6]	C	T	1.949e^-4	0.812	INTRON HHEX
2L	17385513	2L_17385513_SNP [dm3] 2L_17385513_SNP [dm6]	C	A	1.952e^-4	0.812	UPSTREAM CLIP-190 INTRON CLIP-190	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Ubx
2L	9570220	2L_9570220_SNP [dm3] 2L_9570220_SNP [dm6]	C	G	1.954e^-4	0.812	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22515084	3R_22515084_SNP [dm3] 3R_26689362_SNP [dm6]	G	C	1.969e^-4	0.812	INTERGENIC
3L	580886	3L_580886_SNP [dm3] 3L_580886_SNP [dm6]	A	C	1.973e^-4	0.812	UTR_3_PRIME hipk UPSTREAM Ppm1
2R	11724908	2R_11724908_SNP [dm3] 2R_15837403_SNP [dm6]	C	T	1.973e^-4	0.812	INTRON tun	regulatory region REDfly_CRMs
2L	17997092	2L_17997092_SNP [dm3] 2L_17997092_SNP [dm6]	T	C	1.980e^-4	0.812	INTERGENIC
2L	17996509	2L_17996509_SNP [dm3] 2L_17996509_SNP [dm6]	A	T	1.984e^-4	0.812	INTERGENIC
2L	14857597	2L_14857597_SNP [dm3] 2L_14857597_SNP [dm6]	C	T	1.987e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	19871581	X_19871581_SNP [dm3] X_19977548_SNP [dm6]	T	G	1.990e^-4	0.812	INTERGENIC
3L	13330655	3L_13330655_SNP [dm3] 3L_13337555_SNP [dm6]	C	A	1.992e^-4	0.812	INTERGENIC
2L	9104279	2L_9104279_SNP [dm3] 2L_9104279_SNP [dm6]	C	T	1.995e^-4	0.812	INTERGENIC
3R	16387040	3R_16387040_SNP [dm3] 3R_20561318_SNP [dm6]	A	T	2.000e^-4	0.812	START_GAINED CG5191 UTR_5_PRIME CG5191 INTRON CG5191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	722584	3L_722584_SNP [dm3] 3L_722584_SNP [dm6]	T	G	2.004e^-4	0.812	INTERGENIC
2L	12161096	2L_12161096_SNP [dm3] 2L_12161096_SNP [dm6]	T	G	2.006e^-4	0.812	UPSTREAM CG31861 INTRON CG31760
3L	1306890	3L_1306890_SNP [dm3] 3L_1306890_SNP [dm6]	A	C	2.009e^-4	0.812	SYNONYMOUS_CODING CG2277 UPSTREAM CG2469	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3464402	2L_3464402_SNP [dm3] 2L_3464402_SNP [dm6]	T	C	2.010e^-4	0.812	NON_SYNONYMOUS_CODING msl-2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
X	8133270	X_8133270_INS [dm3] X_8239237_INS [dm6]	G	GTAGATG	2.013e^-4	0.812	UTR_3_PRIME sdt
2R	13415561	2R_13415561_SNP [dm3] 2R_17528056_SNP [dm6]	A	G	2.013e^-4	0.812	SYNONYMOUS_CODING Patronin
2L	14857530	2L_14857530_SNP [dm3] 2L_14857530_SNP [dm6]	A	G	2.013e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	19450990	3R_19450990_SNP [dm3] 3R_23625268_SNP [dm6]	A	G	2.018e^-4	0.812	INTRON CG31145
2L	18858630	2L_18858630_DEL [dm3] 2L_18858630_DEL [dm6]	AATCGGCGACCAT...	A	2.022e^-4	0.812	UPSTREAM CG10602 DOWNSTREAM tup INTRON CG10602 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
X	1001051	X_1001051_DEL [dm3] X_1107018_DEL [dm6]	TTT	T	2.025e^-4	0.812	INTRON CG3655	TF binding site mE1_TFBS_HSA
3R	12189502	3R_12189502_SNP [dm3] 3R_16363780_SNP [dm6]	A	G	2.027e^-4	0.812	INTRON CG14880
2L	1953830	2L_1953830_SNP [dm3] 2L_1953830_SNP [dm6]	C	A	2.031e^-4	0.812	INTRON erm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	20987276	2R_20987276_SNP [dm3] 2R_25099753_SNP [dm6]	G	C	2.031e^-4	0.812	UPSTREAM lov INTRON lov	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	21965997	3R_21965997_SNP [dm3] 3R_26140275_SNP [dm6]	T	C	2.046e^-4	0.812	INTERGENIC
2R	21066233	2R_21066233_SNP [dm3] 2R_25178710_SNP [dm6]	T	C	2.046e^-4	0.812	INTERGENIC
3R	2954546	3R_2954546_SNP [dm3] 3R_7128824_SNP [dm6]	C	T	2.046e^-4	0.812	UPSTREAM CG10068 & 1 other EXON CR42875	TF binding site mE1_TFBS_cad
3R	13098655	3R_13098655_SNP [dm3] 3R_17272933_SNP [dm6]	T	C	2.063e^-4	0.812	INTERGENIC
3L	9688095	3L_9688095_SNP [dm3] 3L_9694995_SNP [dm6]	C	A	2.073e^-4	0.812	UPSTREAM CR45121 & 1 other INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	7280971	3R_7280971_SNP [dm3] 3R_11455249_SNP [dm6]	G	C	2.087e^-4	0.812	UPSTREAM PGRP-LB INTRON CG17230 & 1 other	TF binding site mE1_TFBS_inv
2L	22030796	2L_22030796_SNP [dm3] 2L_22030796_SNP [dm6]	T	G	2.090e^-4	0.812	INTERGENIC
2L	9112632	2L_9112632_SNP [dm3] 2L_9112632_SNP [dm6]	A	G	2.093e^-4	0.812	SYNONYMOUS_CODING Or30a
X	6258888	X_6258888_SNP [dm3] X_6364855_SNP [dm6]	A	C	2.098e^-4	0.812	SYNONYMOUS_CODING swa	TF binding site mE1_TFBS_chinmo
2L	19239503	2L_19239503_SNP [dm3] 2L_19239503_SNP [dm6]	A	G	2.108e^-4	0.812	INTERGENIC
3R	11408118	3R_11408118_INS [dm3] 3R_15582396_INS [dm6]	T	TAT	2.116e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	580895	3L_580895_SNP [dm3] 3L_580895_SNP [dm6]	G	A	2.119e^-4	0.812	UTR_3_PRIME hipk UPSTREAM Ppm1
3L	13862769	3L_13862769_SNP [dm3] 3L_13869669_SNP [dm6]	C	T	2.119e^-4	0.812	UTR_3_PRIME dysc
2L	10475844	2L_10475844_INS [dm3] 2L_10475844_INS [dm6]	A	AA	2.136e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9319410	3L_9319410_SNP [dm3] 3L_9326310_SNP [dm6]	T	A	2.145e^-4	0.812	INTERGENIC
3R	20830866	3R_20830866_SNP [dm3] 3R_25005144_SNP [dm6]	T	G	2.147e^-4	0.812	INTRON tnc
3L	3901855	3L_3901855_SNP [dm3] 3L_3901855_SNP [dm6]	T	C	2.148e^-4	0.812	SPLICE_SITE_REGION Ubi-p63E UTR_5_PRIME Ubi-p63E INTRON Ubi-p63E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2L	9877431	2L_9877431_SNP [dm3] 2L_9877431_SNP [dm6]	C	A	2.165e^-4	0.812	UTR_5_PRIME nAChRalpha6 INTRON nAChRalpha6
X	18819334	X_18819334_INS [dm3] X_18925301_INS [dm6]	A	AA	2.171e^-4	0.812	INTERGENIC
3L	1233526	3L_1233526_SNP [dm3] 3L_1233526_SNP [dm6]	G	A	2.175e^-4	0.812	SYNONYMOUS_CODING CG33965 UPSTREAM CG33966 DOWNSTREAM mwh	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5899901	3R_5899901_SNP [dm3] 3R_10074179_SNP [dm6]	A	C	2.176e^-4	0.812	SYNONYMOUS_CODING CG5361 DOWNSTREAM nerfin-2
3R	16294542	3R_16294542_SNP [dm3] 3R_20468820_SNP [dm6]	G	A	2.180e^-4	0.812	INTRON Gfrl
2L	21866518	2L_21866518_SNP [dm3] 2L_21866518_SNP [dm6]	A	G	2.181e^-4	0.812	UPSTREAM CR44917 & 1 other DOWNSTREAM CR44919 INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20994539	2R_20994539_SNP [dm3] 2R_25107016_SNP [dm6]	G	A	2.187e^-4	0.812	INTRON lov
2R	18051426	2R_18051426_SNP [dm3] 2R_22163921_SNP [dm6]	G	C	2.189e^-4	0.812	NON_SYNONYMOUS_CODING CG34206 INTRON a
2L	22030843	2L_22030843_SNP [dm3] 2L_22030843_SNP [dm6]	A	G	2.190e^-4	0.812	INTERGENIC
X	8079585	X_8079585_SNP [dm3] X_8185552_SNP [dm6]	A	T	2.195e^-4	0.812	INTRON sdt
3R	8638979	3R_8638979_SNP [dm3] 3R_12813257_SNP [dm6]	C	G	2.219e^-4	0.812	INTRON CG31345
2L	3301589	2L_3301589_SNP [dm3] 2L_3301589_SNP [dm6]	G	T	2.219e^-4	0.812	SYNONYMOUS_CODING CG9663	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	12147091	3R_12147091_SNP [dm3] 3R_16321369_SNP [dm6]	G	C	2.223e^-4	0.812	UPSTREAM tRNA:F2:89BC & 2 others INTRON Sulf1
3L	21761261	3L_21761261_DEL [dm3] 3L_21768161_DEL [dm6]	CG	C	2.227e^-4	0.812	INTRON Syn1 & 1 other
3L	22859130	3L_22859130_SNP [dm3] 3L_22866030_SNP [dm6]	C	G	2.235e^-4	0.812	UTR_3_PRIME CG33170 INTRON CG33170	TF binding site mE1_TFBS_cad
2L	21729961	2L_21729961_SNP [dm3] 2L_21729961_SNP [dm6]	G	A	2.248e^-4	0.812	DOWNSTREAM CG31619 INTERGENIC
2L	14381597	2L_14381597_SNP [dm3] 2L_14381597_SNP [dm6]	G	A	2.259e^-4	0.812	UPSTREAM ppk INTERGENIC
2L	3745192	2L_3745192_SNP [dm3] 2L_3745192_SNP [dm6]	C	T	2.261e^-4	0.812	UPSTREAM CG10019 INTRON CG10019
2R	14366615	2R_14366615_SNP [dm3] 2R_18479110_SNP [dm6]	A	G	2.263e^-4	0.812	INTRON CG30116
3R	9321715	3R_9321715_SNP [dm3] 3R_13495993_SNP [dm6]	C	A	2.265e^-4	0.812	INTERGENIC
3R	26133840	3R_26133840_DEL [dm3] 3R_30308118_DEL [dm6]	AA	G	2.267e^-4	0.812	INTRON hdc
2L	7779382	2L_7779382_SNP [dm3] 2L_7779382_SNP [dm6]	T	C	2.271e^-4	0.812	UPSTREAM Uro INTERGENIC
2L	12261116	2L_12261116_DEL [dm3] 2L_12261116_DEL [dm6]	TTG	A	2.275e^-4	0.812	INTRON aret	insulator Insulator_Class_II.mE01
3R	8122545	3R_8122545_SNP [dm3] 3R_12296823_SNP [dm6]	C	A	2.276e^-4	0.812	DOWNSTREAM svp INTRON svp
2R	7065817	2R_7065817_SNP [dm3] 2R_11178312_SNP [dm6]	T	C	2.276e^-4	0.812	INTRON shn	TF binding site mE1_TFBS_inv
X	12021505	X_12021505_SNP [dm3] X_12127472_SNP [dm6]	T	A	2.279e^-4	0.812	UPSTREAM Ten-a INTRON Ten-a
2R	5104704	2R_5104704_SNP [dm3] 2R_9217199_SNP [dm6]	G	C	2.283e^-4	0.812	INTERGENIC
3R	16597923	3R_16597923_SNP [dm3] 3R_20772201_SNP [dm6]	G	A	2.284e^-4	0.812	SYNONYMOUS_CODING Takl1 INTRON Syp
2L	5754964	2L_5754964_SNP [dm3] 2L_5754964_SNP [dm6]	T	C	2.288e^-4	0.812	INTRON CG11030
2R	17543031	2R_17543031_SNP [dm3] 2R_21655526_SNP [dm6]	G	T	2.311e^-4	0.812	DOWNSTREAM CR43786 INTRON CG10082	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14987850	3R_14987850_SNP [dm3] 3R_19162128_SNP [dm6]	T	C	2.316e^-4	0.812	SYNONYMOUS_CODING CG42358 UTR_5_PRIME CG42359	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	12146351	3R_12146351_SNP [dm3] 3R_16320629_SNP [dm6]	T	A	2.316e^-4	0.812	UPSTREAM tRNA:F2:89BC INTRON Sulf1
3L	5598895	3L_5598895_SNP [dm3] 3L_5605795_SNP [dm6]	A	G	2.317e^-4	0.812	SYNONYMOUS_CODING mthl2	TF binding site mE1_TFBS_sens
2R	20725080	2R_20725080_SNP [dm3] 2R_24837557_SNP [dm6]	A	T	2.318e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16064824	3L_16064824_SNP [dm3] 3L_16071724_SNP [dm6]	G	A	2.323e^-4	0.812	INTRON Mbs
3L	12161364	3L_12161364_SNP [dm3] 3L_12168264_SNP [dm6]	G	A	2.324e^-4	0.812	SYNONYMOUS_CODING Rh7	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	2105662	3R_2105662_SNP [dm3] 3R_6279940_SNP [dm6]	G	A	2.325e^-4	0.812	INTRON Osi12
2R	5090906	2R_5090906_SNP [dm3] 2R_9203401_SNP [dm6]	G	A	2.330e^-4	0.812	INTERGENIC
2R	5805961	2R_5805961_SNP [dm3] 2R_9918456_SNP [dm6]	T	C	2.337e^-4	0.812	INTRON Mef2
2L	21968495	2L_21968495_SNP [dm3] 2L_21968495_SNP [dm6]	G	T	2.344e^-4	0.812	INTERGENIC
2R	20747415	2R_20747415_DEL [dm3] 2R_24859892_DEL [dm6]	GGCCGGCCATGTGGCTCCTC...	T	2.350e^-4	0.812	EXON CR44829
X	1625757	X_1625757_SNP [dm3] X_1731724_SNP [dm6]	A	C	2.355e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7700032	3L_7700032_SNP [dm3] 3L_7706932_SNP [dm6]	G	T	2.361e^-4	0.812	INTRON CG32373 & 1 other
3R	24510158	3R_24510158_SNP [dm3] 3R_28684436_SNP [dm6]	A	T	2.362e^-4	0.812	INTRON CG9990
3L	8324003	3L_8324003_SNP [dm3] 3L_8330903_SNP [dm6]	C	T	2.366e^-4	0.812	DOWNSTREAM CG34462 INTERGENIC
2R	8245716	2R_8245716_SNP [dm3] 2R_12358211_SNP [dm6]	C	T	2.374e^-4	0.812	INTRON CG30049
3R	14915795	3R_14915795_SNP [dm3] 3R_19090073_SNP [dm6]	G	A	2.377e^-4	0.812	INTRON cdi
3L	11708453	3L_11708453_SNP [dm3] 3L_11715353_SNP [dm6]	C	A	2.404e^-4	0.812	UPSTREAM CG14132 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	5805963	2R_5805963_SNP [dm3] 2R_9918458_SNP [dm6]	G	T	2.405e^-4	0.812	INTRON Mef2
2R	16973642	2R_16973642_SNP [dm3] 2R_21086137_SNP [dm6]	G	A	2.406e^-4	0.812	SYNONYMOUS_CODING Treh	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7469404	3L_7469404_DEL [dm3] 3L_7476304_DEL [dm6]	ACGT	A	2.409e^-4	0.812	DOWNSTREAM CG43292 INTERGENIC
2R	20097816	2R_20097816_SNP [dm3] 2R_24210293_SNP [dm6]	C	T	2.411e^-4	0.812	INTERGENIC
X	3033616	X_3033616_SNP [dm3] X_3139583_SNP [dm6]	T	A	2.425e^-4	0.812	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12171953	2L_12171953_SNP [dm3] 2L_12171953_SNP [dm6]	G	C	2.431e^-4	0.812	DOWNSTREAM CG17217 INTRON CG6583	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
X	4767348	X_4767348_SNP [dm3] X_4873315_SNP [dm6]	A	G	2.440e^-4	0.812	DOWNSTREAM CR43495 INTRON CG42594
3R	10272102	3R_10272102_SNP [dm3] 3R_14446380_SNP [dm6]	C	A	2.451e^-4	0.812	INTRON cv-c	TF binding site BDTNP1_TFBS_da
2L	8305045	2L_8305045_SNP [dm3] 2L_8305045_SNP [dm6]	A	T	2.453e^-4	0.812	UPSTREAM CG7840 INTRON Scgalpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3289962	3L_3289962_SNP [dm3] 3L_3289962_SNP [dm6]	C	A	2.456e^-4	0.812	UTR_3_PRIME CG12017 INTRON CG12017
3L	13649314	3L_13649314_SNP [dm3] 3L_13656214_SNP [dm6]	C	A	2.456e^-4	0.812	INTRON bru-3	TF binding site BDTNP1_TFBS_twi
3L	10610526	3L_10610526_SNP [dm3] 3L_10617426_SNP [dm6]	C	G	2.462e^-4	0.812	INTERGENIC
2L	2899342	2L_2899342_SNP [dm3] 2L_2899342_SNP [dm6]	A	T	2.468e^-4	0.812	INTRON lilli	TF binding site mE1_TFBS_Trl
2L	14802206	2L_14802206_SNP [dm3] 2L_14802206_SNP [dm6]	G	C	2.473e^-4	0.812	UPSTREAM CG33308 INTERGENIC
2R	5103025	2R_5103025_SNP [dm3] 2R_9215520_SNP [dm6]	C	G	2.493e^-4	0.812	DOWNSTREAM CR44451 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13908639	2L_13908639_SNP [dm3] 2L_13908639_SNP [dm6]	T	A	2.499e^-4	0.812	UPSTREAM Ance-2 INTRON Ance	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	17631419	3R_17631419_SNP [dm3] 3R_21805697_SNP [dm6]	A	T	2.502e^-4	0.812	INTRON CASK
X	1452746	X_1452746_SNP [dm3] X_1558713_SNP [dm6]	C	T	2.503e^-4	0.812	UTR_5_PRIME Mur2B UPSTREAM snmRNA:400
2R	16327657	2R_16327657_SNP [dm3] 2R_20440152_SNP [dm6]	A	G	2.505e^-4	0.812	INTRON CG12484
2R	4023273	2R_4023273_SNP [dm3] 2R_8135768_SNP [dm6]	T	G	2.506e^-4	0.812	UPSTREAM Obp44a INTERGENIC
2R	15175389	2R_15175389_SNP [dm3] 2R_19287884_SNP [dm6]	A	T	2.509e^-4	0.812	UPSTREAM CG18606 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14350284	3L_14350284_SNP [dm3] 3L_14357184_SNP [dm6]	C	G	2.512e^-4	0.812	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	5805954	2R_5805954_SNP [dm3] 2R_9918449_SNP [dm6]	T	C	2.518e^-4	0.812	INTRON Mef2
3L	996589	3L_996589_SNP [dm3] 3L_996589_SNP [dm6]	C	T	2.519e^-4	0.812	UTR_3_PRIME trio DOWNSTREAM CG12038 & 1 other	TF binding site mE1_TFBS_HSA
2L	6767952	2L_6767952_SNP [dm3] 2L_6767952_SNP [dm6]	T	C	2.522e^-4	0.812	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_chinmo
2R	8374410	2R_8374410_SNP [dm3] 2R_12486905_SNP [dm6]	A	G	2.524e^-4	0.812	SYNONYMOUS_STOP Dh44-R2 UTR_3_PRIME CG34234 DOWNSTREAM fdl & 1 other
2R	17065791	2R_17065791_SNP [dm3] 2R_21178286_SNP [dm6]	A	G	2.527e^-4	0.812	SYNONYMOUS_CODING CG4286 UPSTREAM Pu INTRON Pu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	19911540	2R_19911540_SNP [dm3] 2R_24024017_SNP [dm6]	A	G	2.527e^-4	0.812	UPSTREAM Adk2 DOWNSTREAM CR45350 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20994030	2R_20994030_SNP [dm3] 2R_25106507_SNP [dm6]	T	C	2.530e^-4	0.812	INTRON lov
2R	5107295	2R_5107295_SNP [dm3] 2R_9219790_SNP [dm6]	C	G	2.530e^-4	0.812	INTERGENIC
2L	3670289	2L_3670289_SNP [dm3] 2L_3670289_SNP [dm6]	G	A	2.539e^-4	0.812	SYNONYMOUS_CODING Sfp24Bc UPSTREAM Sfp24Bb INTRON CG34340
3L	11487899	3L_11487899_SNP [dm3] 3L_11494799_SNP [dm6]	T	A	2.540e^-4	0.812	INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11487909	3L_11487909_SNP [dm3] 3L_11494809_SNP [dm6]	T	C	2.540e^-4	0.812	INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
X	20198691	X_20198691_SNP [dm3] X_20327664_SNP [dm6]	A	C	2.544e^-4	0.812	NON_SYNONYMOUS_CODING CG1631 INTRON CG1504
3R	19826237	3R_19826237_SNP [dm3] 3R_24000515_SNP [dm6]	A	G	2.544e^-4	0.812	SYNONYMOUS_CODING KrT95D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23451281	3R_23451281_SNP [dm3] 3R_27625559_SNP [dm6]	T	G	2.560e^-4	0.812	INTRON Tusp & 1 other
2L	3666906	2L_3666906_SNP [dm3] 2L_3666906_SNP [dm6]	A	G	2.561e^-4	0.812	INTRON CG34340
X	12021512	X_12021512_SNP [dm3] X_12127479_SNP [dm6]	A	T	2.563e^-4	0.812	UPSTREAM Ten-a INTRON Ten-a
2L	19292180	2L_19292180_SNP [dm3] 2L_19292180_SNP [dm6]	C	T	2.563e^-4	0.812	INTERGENIC
3R	17055240	3R_17055240_SNP [dm3] 3R_21229518_SNP [dm6]	A	C	2.565e^-4	0.812	DOWNSTREAM e & 1 other INTERGENIC
2R	15348749	2R_15348749_SNP [dm3] 2R_19461244_SNP [dm6]	C	T	2.566e^-4	0.812	INTRON par-1
3R	23441340	3R_23441340_SNP [dm3] 3R_27615618_SNP [dm6]	G	C	2.568e^-4	0.812	INTRON Tusp
X	5031166	X_5031166_SNP [dm3] X_5137133_SNP [dm6]	C	A	2.571e^-4	0.812	INTRON rg & 1 other
X	20815354	X_20815354_SNP [dm3] X_20944327_SNP [dm6]	G	T	2.571e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	22860442	3L_22860442_SNP [dm3] 3L_22867342_SNP [dm6]	C	T	2.575e^-4	0.812	UTR_3_PRIME CG33170 DOWNSTREAM CG11137 INTRON CG33170	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	5090934	2R_5090934_SNP [dm3] 2R_9203429_SNP [dm6]	G	A	2.579e^-4	0.812	DOWNSTREAM CG8027 INTERGENIC
2L	21879057	2L_21879057_SNP [dm3] 2L_21879057_SNP [dm6]	G	A	2.592e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6669078	3L_6669078_SNP [dm3] 3L_6675978_SNP [dm6]	G	A	2.594e^-4	0.812	INTERGENIC
3L	6669079	3L_6669079_SNP [dm3] 3L_6675979_SNP [dm6]	G	A	2.594e^-4	0.812	INTERGENIC
2L	17578887	2L_17578887_SNP [dm3] 2L_17578887_SNP [dm6]	T	A	2.595e^-4	0.812	UPSTREAM CR45698 INTERGENIC
2R	8415963	2R_8415963_SNP [dm3] 2R_12528458_SNP [dm6]	T	C	2.597e^-4	0.812	UPSTREAM fra INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3839348	2L_3839348_SNP [dm3] 2L_3839348_SNP [dm6]	A	C	2.598e^-4	0.812	DOWNSTREAM slp2 INTERGENIC	regulatory region REDfly_CRMs
2R	16794234	2R_16794234_SNP [dm3] 2R_20906729_SNP [dm6]	G	A	2.602e^-4	0.812	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
2R	20772038	2R_20772038_SNP [dm3] 2R_24884515_SNP [dm6]	C	T	2.603e^-4	0.812	DOWNSTREAM NKAIN INTRON NKAIN
2R	14416077	2R_14416077_SNP [dm3] 2R_18528572_SNP [dm6]	G	C	2.612e^-4	0.812	INTRON CG10924	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	22248031	3R_22248031_SNP [dm3] 3R_26422309_SNP [dm6]	C	A	2.615e^-4	0.812	INTERGENIC
3R	19357158	3R_19357158_SNP [dm3] 3R_23531436_SNP [dm6]	T	C	2.621e^-4	0.812	UPSTREAM CG10175 INTERGENIC
3L	19449444	3L_19449444_SNP [dm3] 3L_19456344_SNP [dm6]	C	G	2.623e^-4	0.812	DOWNSTREAM CR45434 INTERGENIC
2L	17958250	2L_17958250_SNP [dm3] 2L_17958250_SNP [dm6]	T	G	2.624e^-4	0.812	INTERGENIC
2L	1091466	2L_1091466_DEL [dm3] 2L_1091466_DEL [dm6]	AATTAATTAGTTTTTA...	A	2.627e^-4	0.812	INTRON CG4629
3L	10923391	3L_10923391_SNP [dm3] 3L_10930291_SNP [dm6]	C	A	2.633e^-4	0.812	INTERGENIC
3R	23229718	3R_23229718_SNP [dm3] 3R_27403996_SNP [dm6]	C	G	2.637e^-4	0.812	INTRON side
2R	20993976	2R_20993976_SNP [dm3] 2R_25106453_SNP [dm6]	C	T	2.651e^-4	0.812	INTRON lov
2L	12923423	2L_12923423_SNP [dm3] 2L_12923423_SNP [dm6]	T	G	2.653e^-4	0.812	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
3R	7016315	3R_7016315_SNP [dm3] 3R_11190593_SNP [dm6]	G	A	2.655e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5355641	X_5355641_SNP [dm3] X_5461608_SNP [dm6]	A	C	2.656e^-4	0.812	INTRON SPR
3L	7279132	3L_7279132_SNP [dm3] 3L_7286032_SNP [dm6]	A	G	2.659e^-4	0.812	INTRON unc-13-4A
3L	1122497	3L_1122497_SNP [dm3] 3L_1122497_SNP [dm6]	G	T	2.660e^-4	0.812	INTERGENIC
2R	21015131	2R_21015131_SNP [dm3] 2R_25127608_SNP [dm6]	G	A	2.665e^-4	0.812	INTRON lov	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	19321929	2L_19321929_SNP [dm3] 2L_19321929_SNP [dm6]	C	T	2.669e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	20901092	2R_20901092_SNP [dm3] 2R_25013569_SNP [dm6]	C	T	2.679e^-4	0.812	INTRON uzip
2L	19461431	2L_19461431_SNP [dm3] 2L_19461431_SNP [dm6]	C	A	2.688e^-4	0.812	INTERGENIC
3R	25106476	3R_25106476_SNP [dm3] 3R_29280754_SNP [dm6]	T	G	2.693e^-4	0.812	INTERGENIC	regulatory region REDfly_CRMs
2L	9112660	2L_9112660_SNP [dm3] 2L_9112660_SNP [dm6]	T	G	2.696e^-4	0.812	INTRON Or30a
2L	21859012	2L_21859012_SNP [dm3] 2L_21859012_SNP [dm6]	T	C	2.707e^-4	0.812	INTRON CR44917	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	9032809	2L_9032809_SNP [dm3] 2L_9032809_SNP [dm6]	G	A	2.708e^-4	0.812	UPSTREAM CG9582 & 1 other INTERGENIC
2R	17607601	2R_17607601_INS [dm3] 2R_21720096_INS [dm6]	T	TTAC	2.711e^-4	0.812	UPSTREAM LBR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	11859039	3R_11859039_SNP [dm3] 3R_16033317_SNP [dm6]	C	T	2.713e^-4	0.812	INTRON pnr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	1715163	3L_1715163_SNP [dm3] 3L_1715163_SNP [dm6]	T	C	2.720e^-4	0.812	UTR_3_PRIME CG7991 DOWNSTREAM drpr
2L	19238281	2L_19238281_SNP [dm3] 2L_19238281_SNP [dm6]	A	G	2.722e^-4	0.812	INTERGENIC
3R	14281574	3R_14281574_SNP [dm3] 3R_18455852_SNP [dm6]	A	G	2.728e^-4	0.812	INTRON fru
3R	11989310	3R_11989310_SNP [dm3] 3R_16163588_SNP [dm6]	T	C	2.729e^-4	0.812	INTRON CG6006
3R	14388588	3R_14388588_SNP [dm3] 3R_18562866_SNP [dm6]	T	C	2.734e^-4	0.812	INTERGENIC
2L	10226964	2L_10226964_SNP [dm3] 2L_10226964_SNP [dm6]	C	A	2.737e^-4	0.812	UPSTREAM CG5708 DOWNSTREAM CG5694 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	16597867	3R_16597867_SNP [dm3] 3R_20772145_SNP [dm6]	G	C	2.742e^-4	0.812	INTRON Syp & 1 other
2L	22004236	2L_22004236_SNP [dm3] 2L_22004236_SNP [dm6]	A	T	2.745e^-4	0.812	INTERGENIC
2R	7376248	2R_7376248_SNP [dm3] 2R_11488743_SNP [dm6]	C	A	2.745e^-4	0.812	INTRON inv
2R	11839364	2R_11839364_SNP [dm3] 2R_15951859_SNP [dm6]	T	C	2.762e^-4	0.812	UPSTREAM Strn-Mlck INTRON Strn-Mlck
3R	11631224	3R_11631224_SNP [dm3] 3R_15805502_SNP [dm6]	C	T	2.768e^-4	0.812	INTRON alpha-Man-IIb
3R	11631227	3R_11631227_SNP [dm3] 3R_15805505_SNP [dm6]	C	T	2.768e^-4	0.812	INTRON alpha-Man-IIb
3L	12873365	3L_12873365_INS [dm3] 3L_12880265_INS [dm6]	A	AACA	2.771e^-4	0.812	INTERGENIC
3L	580893	3L_580893_SNP [dm3] 3L_580893_SNP [dm6]	A	G	2.772e^-4	0.812	UTR_3_PRIME hipk UPSTREAM Ppm1
2L	11150228	2L_11150228_SNP [dm3] 2L_11150228_SNP [dm6]	G	A	2.772e^-4	0.812	INTERGENIC
3L	8591753	3L_8591753_SNP [dm3] 3L_8598653_SNP [dm6]	G	T	2.774e^-4	0.812	SYNONYMOUS_CODING CG43078 DOWNSTREAM Nelf-E	TF binding site mE1_TFBS_cad
3L	8589983	3L_8589983_SNP [dm3] 3L_8596883_SNP [dm6]	A	G	2.789e^-4	0.812	SYNONYMOUS_CODING CG43078 DOWNSTREAM CG43078	TF binding site mE1_TFBS_chinmo
2L	2427476	2L_2427476_SNP [dm3] 2L_2427476_SNP [dm6]	T	G	2.798e^-4	0.812	UPSTREAM dpp EXON CR44912
X	1954195	X_1954195_SNP [dm3] X_2060162_SNP [dm6]	T	C	2.801e^-4	0.812	SYNONYMOUS_CODING Sik2	TF binding site mE1_TFBS_chinmo
3L	7469410	3L_7469410_SNP [dm3] 3L_7476310_SNP [dm6]	T	G	2.811e^-4	0.812	DOWNSTREAM CG43292 INTERGENIC
3L	7469413	3L_7469413_DEL [dm3] 3L_7476313_DEL [dm6]	TTTCC	T	2.818e^-4	0.812	DOWNSTREAM CG43292 INTERGENIC
2R	8159552	2R_8159552_SNP [dm3] 2R_12272047_SNP [dm6]	C	T	2.819e^-4	0.812	INTRON Cam
2L	17582486	2L_17582486_DEL [dm3] 2L_17582486_DEL [dm6]	ATGGCAT	G	2.820e^-4	0.812	INTERGENIC
3L	9201016	3L_9201016_SNP [dm3] 3L_9207916_SNP [dm6]	A	C	2.822e^-4	0.812	INTRON Slc45-1
3R	22249633	3R_22249633_SNP [dm3] 3R_26423911_SNP [dm6]	T	C	2.824e^-4	0.812	DOWNSTREAM CG6503 INTERGENIC
2L	21805871	2L_21805871_SNP [dm3] 2L_21805871_SNP [dm6]	G	C	2.828e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	16352038	2R_16352038_SNP [dm3] 2R_20464533_SNP [dm6]	T	C	2.829e^-4	0.812	INTRON CG12484
3R	14915778	3R_14915778_SNP [dm3] 3R_19090056_SNP [dm6]	A	G	2.840e^-4	0.812	INTRON cdi
2R	20761662	2R_20761662_INS [dm3] 2R_24874139_INS [dm6]	A	AA	2.843e^-4	0.812	DOWNSTREAM CG30423 INTRON CG16896	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_sens
3L	10699904	3L_10699904_INS [dm3] 3L_10706804_INS [dm6]	A	AA	2.844e^-4	0.812	INTERGENIC
2L	1789105	2L_1789105_SNP [dm3] 2L_1789105_SNP [dm6]	C	A	2.846e^-4	0.812	DOWNSTREAM Gr22d INTERGENIC
3R	14272037	3R_14272037_SNP [dm3] 3R_18446315_SNP [dm6]	T	C	2.848e^-4	0.812	INTRON fru
3R	17387352	3R_17387352_SNP [dm3] 3R_21561630_SNP [dm6]	A	G	2.852e^-4	0.812	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13156683	2R_13156683_SNP [dm3] 2R_17269178_SNP [dm6]	T	C	2.862e^-4	0.812	INTRON mbl	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run
2L	22098331	2L_22098331_SNP [dm3] 2L_22098331_SNP [dm6]	T	A	2.863e^-4	0.812	INTERGENIC
2L	9567338	2L_9567338_SNP [dm3] 2L_9567338_SNP [dm6]	T	A	2.869e^-4	0.812	UPSTREAM jp DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	13197931	3R_13197931_SNP [dm3] 3R_17372209_SNP [dm6]	C	G	2.872e^-4	0.812	UPSTREAM CR44256 INTERGENIC
2L	16205251	2L_16205251_SNP [dm3] 2L_16205251_SNP [dm6]	C	T	2.872e^-4	0.812	INTERGENIC
3L	11434514	3L_11434514_DEL [dm3] 3L_11441414_DEL [dm6]	CATACATTAGTGAAGAA...	G	2.872e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	6572244	3L_6572244_SNP [dm3] 3L_6579144_SNP [dm6]	G	C	2.873e^-4	0.812	INTRON CG18769 & 1 other
2L	17576549	2L_17576549_SNP [dm3] 2L_17576549_SNP [dm6]	A	G	2.874e^-4	0.812	INTERGENIC
2L	21846992	2L_21846992_SNP [dm3] 2L_21846992_SNP [dm6]	A	C	2.876e^-4	0.812	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9570160	2L_9570160_DEL [dm3] 2L_9570160_DEL [dm6]	AT	A	2.881e^-4	0.812	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8338654	2R_8338654_SNP [dm3] 2R_12451149_SNP [dm6]	C	A	2.881e^-4	0.812	SYNONYMOUS_CODING Dyb INTRON Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	16445839	2R_16445839_SNP [dm3] 2R_20558334_SNP [dm6]	C	T	2.890e^-4	0.812	DOWNSTREAM Mgat1 INTRON lms	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10842529	3L_10842529_SNP [dm3] 3L_10849429_SNP [dm6]	A	C	2.892e^-4	0.812	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	15925300	2R_15925300_SNP [dm3] 2R_20037795_SNP [dm6]	A	C	2.897e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	9233919	2R_9233919_DEL [dm3] 2R_13346414_DEL [dm6]	CG	C	2.900e^-4	0.812	INTRON CR44206
2R	16743179	2R_16743179_SNP [dm3] 2R_20855674_SNP [dm6]	T	C	2.903e^-4	0.812	INTERGENIC
X	21081307	X_21081307_SNP [dm3] X_21210280_SNP [dm6]	A	G	2.907e^-4	0.812	INTRON CG32521
X	717404	X_717404_SNP [dm3] X_823371_SNP [dm6]	C	A	2.909e^-4	0.812	INTRON CG43867
2L	19314205	2L_19314205_SNP [dm3] 2L_19314205_SNP [dm6]	C	T	2.923e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_cad
2R	18873649	2R_18873649_SNP [dm3] 2R_22986126_SNP [dm6]	T	A	2.924e^-4	0.812	NON_SYNONYMOUS_CODING CG9897 UPSTREAM mir-4939 & 1 other INTRON twi EXON CR42742
3L	15871767	3L_15871767_SNP [dm3] 3L_15878667_SNP [dm6]	G	T	2.926e^-4	0.812	INTRON pHCl
2L	13345284	2L_13345284_INS [dm3] 2L_13345284_INS [dm6]	T	TTAT	2.937e^-4	0.812	INTERGENIC
3R	16985036	3R_16985036_SNP [dm3] 3R_21159314_SNP [dm6]	A	T	2.938e^-4	0.812	UTR_3_PRIME CG10824 INTRON SNF4Agamma
2L	13083551	2L_13083551_SNP [dm3] 2L_13083551_SNP [dm6]	C	A	2.942e^-4	0.812	INTERGENIC
3L	334372	3L_334372_SNP [dm3] 3L_334372_SNP [dm6]	T	G	2.943e^-4	0.812	NON_SYNONYMOUS_CODING mthl10 DOWNSTREAM mthl10 INTRON Ptpmeg & 1 other	TF binding site mE1_TFBS_cad
3L	18561092	3L_18561092_SNP [dm3] 3L_18567992_SNP [dm6]	G	A	2.953e^-4	0.812	INTRON AstC-R1	transposable element FlyBase
2L	1333795	2L_1333795_SNP [dm3] 2L_1333795_SNP [dm6]	A	T	2.955e^-4	0.812	UPSTREAM CG5440 INTERGENIC
3R	18266950	3R_18266950_SNP [dm3] 3R_22441228_SNP [dm6]	A	C	2.957e^-4	0.812	SYNONYMOUS_CODING CG12499	TF binding site mE1_TFBS_cad
2L	17706022	2L_17706022_SNP [dm3] 2L_17706022_SNP [dm6]	G	A	2.988e^-4	0.812	UTR_3_PRIME CG43231 INTRON CadN
3R	2945058	3R_2945058_SNP [dm3] 3R_7119336_SNP [dm6]	T	A	2.992e^-4	0.812	INTRON Alh
2R	20572511	2R_20572511_SNP [dm3] 2R_24684988_SNP [dm6]	A	G	3.003e^-4	0.812	UTR_5_PRIME Mmp1 INTRON Mmp1
3L	8885634	3L_8885634_SNP [dm3] 3L_8892534_SNP [dm6]	A	T	3.005e^-4	0.812	SYNONYMOUS_CODING Mcm7	TF binding site BDTNP1_TFBS_twi
3R	22512841	3R_22512841_SNP [dm3] 3R_26687119_SNP [dm6]	T	A	3.017e^-4	0.812	INTERGENIC
3L	2007662	3L_2007662_SNP [dm3] 3L_2007662_SNP [dm6]	G	C	3.021e^-4	0.812	INTERGENIC
2L	20702984	2L_20702984_SNP [dm3] 2L_20702984_SNP [dm6]	A	G	3.027e^-4	0.812	INTRON Hr38
3R	12188294	3R_12188294_SNP [dm3] 3R_16362572_SNP [dm6]	A	G	3.034e^-4	0.812	INTRON CG14880
3L	6654017	3L_6654017_SNP [dm3] 3L_6660917_SNP [dm6]	C	G	3.036e^-4	0.812	INTERGENIC
3R	4819377	3R_4819377_SNP [dm3] 3R_8993655_SNP [dm6]	C	T	3.040e^-4	0.812	UPSTREAM E_var_3-9 INTRON CG11975	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11396499	3R_11396499_SNP [dm3] 3R_15570777_SNP [dm6]	C	A	3.040e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	20726896	2R_20726896_SNP [dm3] 2R_24839373_SNP [dm6]	G	A	3.043e^-4	0.812	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_cnc
3L	342035	3L_342035_SNP [dm3] 3L_342035_SNP [dm6]	G	A	3.054e^-4	0.812	UPSTREAM mthl10 INTRON Ptpmeg & 1 other
3L	3266189	3L_3266189_SNP [dm3] 3L_3266189_SNP [dm6]	T	G	3.056e^-4	0.812	INTRON ckd	TF binding site BDTNP1_TFBS_dl
3R	15025453	3R_15025453_SNP [dm3] 3R_19199731_SNP [dm6]	G	A	3.056e^-4	0.812	INTRON CG31475
2R	6083865	2R_6083865_SNP [dm3] 2R_10196360_SNP [dm6]	G	A	3.059e^-4	0.812	DOWNSTREAM CG34221 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	8628018	X_8628018_SNP [dm3] X_8733985_SNP [dm6]	A	C	3.061e^-4	0.812	INTERGENIC
2R	6916124	2R_6916124_INS [dm3] 2R_11028619_INS [dm6]	G	CCTCCATTTTCCTC...	3.067e^-4	0.812	INTRON luna
X	6204338	X_6204338_SNP [dm3] X_6310305_SNP [dm6]	A	T	3.070e^-4	0.812	INTRON CG15894
X	8113268	X_8113268_SNP [dm3] X_8219235_SNP [dm6]	A	G	3.070e^-4	0.812	INTRON sdt	TF binding site BDTNP1_TFBS_dl
X	18645720	X_18645720_SNP [dm3] X_18751687_SNP [dm6]	A	G	3.073e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	22048414	2L_22048414_SNP [dm3] 2L_22048414_SNP [dm6]	C	G	3.081e^-4	0.812	INTERGENIC	transposable element FlyBase
2R	17625813	2R_17625813_SNP [dm3] 2R_21738308_SNP [dm6]	G	T	3.083e^-4	0.812	INTERGENIC
X	9914255	X_9914255_SNP [dm3] X_10020222_SNP [dm6]	C	T	3.087e^-4	0.812	INTRON Cht6
3R	9318024	3R_9318024_SNP [dm3] 3R_13492302_SNP [dm6]	C	A	3.093e^-4	0.812	INTERGENIC
2R	17304343	2R_17304343_SNP [dm3] 2R_21416838_SNP [dm6]	A	G	3.094e^-4	0.812	INTRON Sdc
2L	1786521	2L_1786521_SNP [dm3] 2L_1786521_SNP [dm6]	C	T	3.098e^-4	0.812	INTERGENIC
2R	16202689	2R_16202689_SNP [dm3] 2R_20315184_SNP [dm6]	G	A	3.101e^-4	0.812	UPSTREAM CR44642 INTRON CG13868	TF binding site BDTNP1_TFBS_slp1
2L	21095999	2L_21095999_DEL [dm3] 2L_21095999_DEL [dm6]	ACA	A	3.104e^-4	0.812	UPSTREAM CG34136 INTRON CG12050
2R	16793829	2R_16793829_SNP [dm3] 2R_20906324_SNP [dm6]	C	T	3.108e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	8963136	2L_8963136_SNP [dm3] 2L_8963136_SNP [dm6]	G	A	3.108e^-4	0.812	NON_SYNONYMOUS_CODING CG32985 UPSTREAM CG9525
X	20994454	X_20994454_SNP [dm3] X_21123427_SNP [dm6]	A	T	3.111e^-4	0.812	UPSTREAM CG34120 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	19079203	2L_19079203_SNP [dm3] 2L_19079203_SNP [dm6]	C	T	3.114e^-4	0.812	UPSTREAM CG10700 DOWNSTREAM Lim3 INTERGENIC
2L	11219799	2L_11219799_SNP [dm3] 2L_11219799_SNP [dm6]	A	C	3.122e^-4	0.812	INTRON ab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	9569845	2L_9569845_SNP [dm3] 2L_9569845_SNP [dm6]	G	A	3.124e^-4	0.812	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	501172	2R_501172_SNP [dm3] 2R_4613667_SNP [dm6]	T	C	3.124e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_sens
2L	21961134	2L_21961134_SNP [dm3] 2L_21961134_SNP [dm6]	T	C	3.128e^-4	0.812	INTERGENIC
3L	20581400	3L_20581400_SNP [dm3] 3L_20588300_SNP [dm6]	C	G	3.138e^-4	0.812	INTERGENIC
X	14488376	X_14488376_SNP [dm3] X_14594343_SNP [dm6]	T	G	3.138e^-4	0.812	INTRON CG9413
2L	16546959	2L_16546959_SNP [dm3] 2L_16546959_SNP [dm6]	G	T	3.139e^-4	0.812	INTRON CG42389
2R	16797171	2R_16797171_SNP [dm3] 2R_20909666_SNP [dm6]	C	T	3.141e^-4	0.812	UPSTREAM CG9235 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2310301	X_2310301_SNP [dm3] X_2416268_SNP [dm6]	T	G	3.147e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	8809372	2L_8809372_INS [dm3] 2L_8809372_INS [dm6]	C	CG	3.150e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2L	22004764	2L_22004764_SNP [dm3] 2L_22004764_SNP [dm6]	T	G	3.151e^-4	0.812	INTERGENIC	transposable element FlyBase
2R	13394909	2R_13394909_SNP [dm3] 2R_17507404_SNP [dm6]	C	T	3.152e^-4	0.812	UTR_3_PRIME CG43164 INTRON CG43164	TF binding site mE1_TFBS_cad
2L	21957165	2L_21957165_SNP [dm3] 2L_21957165_SNP [dm6]	T	C	3.153e^-4	0.812	UPSTREAM CR44217 INTERGENIC
3L	11809169	3L_11809169_SNP [dm3] 3L_11816069_SNP [dm6]	C	A	3.155e^-4	0.812	DOWNSTREAM CG5946 INTRON CG14130	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16295344	3R_16295344_SNP [dm3] 3R_20469622_SNP [dm6]	A	G	3.161e^-4	0.812	INTRON Gfrl
2R	4165696	2R_4165696_SNP [dm3] 2R_8278191_SNP [dm6]	T	C	3.165e^-4	0.812	DOWNSTREAM CR44280 INTERGENIC
2L	8134126	2L_8134126_SNP [dm3] 2L_8134126_SNP [dm6]	A	C	3.169e^-4	0.812	DOWNSTREAM CG8552 & 1 other INTERGENIC
2R	12580013	2R_12580013_SNP [dm3] 2R_16692508_SNP [dm6]	C	A	3.174e^-4	0.812	SYNONYMOUS_CODING CG5210 INTRON CG30463	TF binding site mE1_TFBS_cad
2L	9418330	2L_9418330_SNP [dm3] 2L_9418330_SNP [dm6]	A	T	3.175e^-4	0.812	INTRON Mco1
2L	9418332	2L_9418332_SNP [dm3] 2L_9418332_SNP [dm6]	C	G	3.175e^-4	0.812	INTRON Mco1
3R	16291562	3R_16291562_SNP [dm3] 3R_20465840_SNP [dm6]	G	A	3.183e^-4	0.812	INTRON Gfrl
3L	9275579	3L_9275579_SNP [dm3] 3L_9282479_SNP [dm6]	G	A	3.184e^-4	0.812	INTRON GluRIB
2L	12171966	2L_12171966_SNP [dm3] 2L_12171966_SNP [dm6]	T	C	3.188e^-4	0.812	DOWNSTREAM CG17217 INTRON CG6583	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	9115615	3L_9115615_SNP [dm3] 3L_9122515_SNP [dm6]	C	A	3.188e^-4	0.812	INTRON bol
2L	19247514	2L_19247514_SNP [dm3] 2L_19247514_SNP [dm6]	G	A	3.207e^-4	0.812	INTERGENIC
3R	9317965	3R_9317965_SNP [dm3] 3R_13492243_SNP [dm6]	G	A	3.207e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_inv
2R	18453286	2R_18453286_SNP [dm3] 2R_22565781_SNP [dm6]	G	A	3.207e^-4	0.812	SYNONYMOUS_CODING dnr1	TF binding site mE1_TFBS_cad
X	1954294	X_1954294_SNP [dm3] X_2060261_SNP [dm6]	A	G	3.215e^-4	0.812	SYNONYMOUS_CODING Sik2	TF binding site mE1_TFBS_chinmo
2L	12246155	2L_12246155_SNP [dm3] 2L_12246155_SNP [dm6]	T	A	3.217e^-4	0.812	INTRON aret
2L	1791638	2L_1791638_SNP [dm3] 2L_1791638_SNP [dm6]	C	T	3.224e^-4	0.812	NON_SYNONYMOUS_CODING Gr22c DOWNSTREAM Gr22b
2L	21886387	2L_21886387_SNP [dm3] 2L_21886387_SNP [dm6]	C	G	3.230e^-4	0.812	INTERGENIC
2L	12171989	2L_12171989_DEL [dm3] 2L_12171989_DEL [dm6]	ACACCTA	A	3.230e^-4	0.812	UPSTREAM crok DOWNSTREAM CG17217 INTRON CG6583	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	9961398	3L_9961398_SNP [dm3] 3L_9968298_SNP [dm6]	T	C	3.232e^-4	0.812	UTR_5_PRIME CG6685 UPSTREAM Nc DOWNSTREAM CG34356	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	12181801	3R_12181801_SNP [dm3] 3R_16356079_SNP [dm6]	G	A	3.236e^-4	0.812	INTRON CG10311
3L	9688096	3L_9688096_SNP [dm3] 3L_9694996_SNP [dm6]	C	T	3.241e^-4	0.812	UPSTREAM CR45121 & 1 other INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	3693060	2R_3693060_SNP [dm3] 2R_7805555_SNP [dm6]	T	G	3.243e^-4	0.812	UTR_5_PRIME Nop17l UPSTREAM sax INTRON Nop17l	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	12478708	2R_12478708_SNP [dm3] 2R_16591203_SNP [dm6]	T	C	3.248e^-4	0.812	SYNONYMOUS_CODING CG8306	TF binding site mE1_TFBS_sens
3L	18350534	3L_18350534_SNP [dm3] 3L_18357434_SNP [dm6]	T	C	3.252e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1248224	3L_1248224_SNP [dm3] 3L_1248224_SNP [dm6]	C	T	3.254e^-4	0.812	UPSTREAM Psf1 INTRON Sac1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9570130	2L_9570130_SNP [dm3] 2L_9570130_SNP [dm6]	A	C	3.264e^-4	0.812	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5911965	3R_5911965_SNP [dm3] 3R_10086243_SNP [dm6]	G	C	3.265e^-4	0.812	INTRON CR45054	TF binding site mE1_TFBS_Trl
2L	13476831	2L_13476831_SNP [dm3] 2L_13476831_SNP [dm6]	A	C	3.266e^-4	0.812	INTRON CG42784
2L	1788690	2L_1788690_SNP [dm3] 2L_1788690_SNP [dm6]	A	G	3.283e^-4	0.812	DOWNSTREAM Gr22d INTERGENIC
2L	908928	2L_908928_SNP [dm3] 2L_908928_SNP [dm6]	C	A	3.285e^-4	0.812	INTERGENIC
2L	17583093	2L_17583093_SNP [dm3] 2L_17583093_SNP [dm6]	G	A	3.296e^-4	0.812	UPSTREAM CR45111 INTERGENIC
2L	1791876	2L_1791876_SNP [dm3] 2L_1791876_SNP [dm6]	A	G	3.299e^-4	0.812	UPSTREAM Gr22c DOWNSTREAM Gr22b INTERGENIC	regulatory region REDfly_CRMs
3R	17387400	3R_17387400_SNP [dm3] 3R_21561678_SNP [dm6]	G	T	3.305e^-4	0.812	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8993808	2L_8993808_SNP [dm3] 2L_8993808_SNP [dm6]	T	A	3.306e^-4	0.812	UPSTREAM CG17906 DOWNSTREAM alien & 1 other INTERGENIC
2L	6098000	2L_6098000_SNP [dm3] 2L_6098000_SNP [dm6]	G	A	3.307e^-4	0.812	SYNONYMOUS_CODING CG9175	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_chinmo
2L	12190660	2L_12190660_SNP [dm3] 2L_12190660_SNP [dm6]	C	T	3.311e^-4	0.812	INTRON aret
3R	13138620	3R_13138620_SNP [dm3] 3R_17312898_SNP [dm6]	G	A	3.313e^-4	0.812	INTERGENIC
3R	7078944	3R_7078944_SNP [dm3] 3R_11253222_SNP [dm6]	T	C	3.313e^-4	0.812	INTRON CR43283 EXON CR43283	TF binding site mE1_TFBS_kn
2R	4516155	2R_4516155_SNP [dm3] 2R_8628650_SNP [dm6]	T	A	3.313e^-4	0.812	SYNONYMOUS_CODING CG14749	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22512866	3R_22512866_SNP [dm3] 3R_26687144_SNP [dm6]	C	G	3.323e^-4	0.812	INTERGENIC
2R	14014670	2R_14014670_SNP [dm3] 2R_18127165_SNP [dm6]	C	T	3.327e^-4	0.812	SYNONYMOUS_CODING Spn55B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16202346	3L_16202346_SNP [dm3] 3L_16209246_SNP [dm6]	C	T	3.330e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_cad
3L	2695555	3L_2695555_SNP [dm3] 3L_2695555_SNP [dm6]	A	C	3.330e^-4	0.812	INTRON Fife
2L	12245032	2L_12245032_SNP [dm3] 2L_12245032_SNP [dm6]	T	A	3.334e^-4	0.812	INTRON aret
3L	4012139	3L_4012139_SNP [dm3] 3L_4012139_SNP [dm6]	A	T	3.337e^-4	0.812	INTERGENIC
3R	13357010	3R_13357010_SNP [dm3] 3R_17531288_SNP [dm6]	C	T	3.342e^-4	0.812	INTERGENIC
2L	19286563	2L_19286563_DEL [dm3] 2L_19286563_DEL [dm6]	CC	C	3.345e^-4	0.812	INTERGENIC
2L	12133253	2L_12133253_SNP [dm3] 2L_12133253_SNP [dm6]	A	G	3.358e^-4	0.812	SYNONYMOUS_CODING rho-6	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	12093442	3L_12093442_SNP [dm3] 3L_12100342_SNP [dm6]	G	A	3.358e^-4	0.812	INTERGENIC
3R	16295341	3R_16295341_SNP [dm3] 3R_20469619_SNP [dm6]	C	A	3.370e^-4	0.812	INTRON Gfrl
2L	21913716	2L_21913716_SNP [dm3] 2L_21913716_SNP [dm6]	A	T	3.372e^-4	0.812	DOWNSTREAM CG31600 INTERGENIC
2R	16743203	2R_16743203_SNP [dm3] 2R_20855698_SNP [dm6]	A	C	3.377e^-4	0.812	INTERGENIC
3R	14478822	3R_14478822_SNP [dm3] 3R_18653100_SNP [dm6]	C	A	3.379e^-4	0.812	SPLICE_SITE_REGION CG31224 INTRON CG31224	TF binding site mE1_TFBS_cad
2R	3079481	2R_3079481_SNP [dm3] 2R_7191976_SNP [dm6]	T	G	3.391e^-4	0.812	INTRON pk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13101812	3R_13101812_SNP [dm3] 3R_17276090_SNP [dm6]	T	A	3.393e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12028424	2L_12028424_SNP [dm3] 2L_12028424_SNP [dm6]	C	A	3.397e^-4	0.812	INTRON dmGlut	TF binding site mE1_TFBS_cad
2L	4429190	2L_4429190_SNP [dm3] 2L_4429190_SNP [dm6]	G	T	3.402e^-4	0.812	INTRON CG15431
2L	12190670	2L_12190670_SNP [dm3] 2L_12190670_SNP [dm6]	A	T	3.403e^-4	0.812	INTRON aret
2L	1791875	2L_1791875_SNP [dm3] 2L_1791875_SNP [dm6]	T	G	3.405e^-4	0.812	UPSTREAM Gr22c DOWNSTREAM Gr22b INTERGENIC	regulatory region REDfly_CRMs
2R	13301425	2R_13301425_INS [dm3] 2R_17413920_INS [dm6]	A	ATTCATTAG	3.408e^-4	0.812	DOWNSTREAM cnk & 1 other INTERGENIC
2R	20909759	2R_20909759_SNP [dm3] 2R_25022236_SNP [dm6]	C	G	3.408e^-4	0.812	INTRON uzip
2L	21916487	2L_21916487_SNP [dm3] 2L_21916487_SNP [dm6]	T	A	3.412e^-4	0.812	NON_SYNONYMOUS_CODING CG11634
2R	16352047	2R_16352047_SNP [dm3] 2R_20464542_SNP [dm6]	G	A	3.422e^-4	0.812	INTRON CG12484
2L	21952720	2L_21952720_SNP [dm3] 2L_21952720_SNP [dm6]	C	T	3.425e^-4	0.812	INTERGENIC
2R	18456124	2R_18456124_SNP [dm3] 2R_22568619_SNP [dm6]	C	A	3.431e^-4	0.812	INTRON dnr1	TF binding site mE1_TFBS_Trl
2L	1791374	2L_1791374_SNP [dm3] 2L_1791374_SNP [dm6]	G	A	3.446e^-4	0.812	SYNONYMOUS_CODING Gr22c DOWNSTREAM Gr22b
2L	19470827	2L_19470827_SNP [dm3] 2L_19470827_SNP [dm6]	G	A	3.446e^-4	0.812	UPSTREAM CR45723 DOWNSTREAM CR43839 & 1 other INTERGENIC
3L	11922558	3L_11922558_SNP [dm3] 3L_11929458_SNP [dm6]	G	C	3.449e^-4	0.812	INTRON CG44837 & 1 other
3R	18991448	3R_18991448_SNP [dm3] 3R_23165726_SNP [dm6]	A	G	3.461e^-4	0.812	INTERGENIC
2L	9877532	2L_9877532_SNP [dm3] 2L_9877532_SNP [dm6]	A	G	3.461e^-4	0.812	UTR_5_PRIME nAChRalpha6 INTRON nAChRalpha6
3R	15266826	3R_15266826_SNP [dm3] 3R_19441104_SNP [dm6]	T	C	3.463e^-4	0.812	INTRON CG31221
3R	14695533	3R_14695533_SNP [dm3] 3R_18869811_SNP [dm6]	T	A	3.463e^-4	0.812	INTERGENIC
2L	1792363	2L_1792363_SNP [dm3] 2L_1792363_SNP [dm6]	G	C	3.467e^-4	0.812	NON_SYNONYMOUS_CODING Gr22b UPSTREAM Gr22c	regulatory region REDfly_CRMs
3R	20958000	3R_20958000_SNP [dm3] 3R_25132278_SNP [dm6]	T	G	3.469e^-4	0.812	INTRON Bili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12035817	3R_12035817_SNP [dm3] 3R_16210095_SNP [dm6]	T	A	3.471e^-4	0.812	UPSTREAM CR45638 DOWNSTREAM CR45637 INTERGENIC
3L	11852058	3L_11852058_SNP [dm3] 3L_11858958_SNP [dm6]	A	C	3.485e^-4	0.812	INTRON CG44837
3R	12358150	3R_12358150_SNP [dm3] 3R_16532428_SNP [dm6]	C	T	3.487e^-4	0.812	INTRON CG42342
3R	11634168	3R_11634168_SNP [dm3] 3R_15808446_SNP [dm6]	T	C	3.491e^-4	0.812	INTRON alpha-Man-IIb
3R	14480618	3R_14480618_SNP [dm3] 3R_18654896_SNP [dm6]	C	A	3.495e^-4	0.812	SYNONYMOUS_CODING CG31224	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	5243810	X_5243810_SNP [dm3] X_5349777_SNP [dm6]	T	C	3.496e^-4	0.812	INTRON SK
2L	1791864	2L_1791864_SNP [dm3] 2L_1791864_SNP [dm6]	C	A	3.496e^-4	0.812	UPSTREAM Gr22c DOWNSTREAM Gr22b INTERGENIC	regulatory region REDfly_CRMs
2L	1791866	2L_1791866_DEL [dm3] 2L_1791866_DEL [dm6]	GATATA	G	3.496e^-4	0.812	UPSTREAM Gr22c DOWNSTREAM Gr22b INTERGENIC	regulatory region REDfly_CRMs
3R	17387392	3R_17387392_SNP [dm3] 3R_21561670_SNP [dm6]	C	G	3.501e^-4	0.812	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	5225503	3R_5225503_SNP [dm3] 3R_9399781_SNP [dm6]	C	A	3.510e^-4	0.812	SYNONYMOUS_CODING CG34117 DOWNSTREAM RpL34b & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	6735735	3L_6735735_SNP [dm3] 3L_6742635_SNP [dm6]	G	T	3.510e^-4	0.812	INTRON dikar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	3997257	2L_3997257_INS [dm3] 2L_3997257_INS [dm6]	T	TGA	3.511e^-4	0.812	INTERGENIC
2R	11177864	2R_11177864_SNP [dm3] 2R_15290359_SNP [dm6]	A	G	3.521e^-4	0.812	INTRON Trpm
3L	7469437	3L_7469437_SNP [dm3] 3L_7476337_SNP [dm6]	A	G	3.528e^-4	0.812	DOWNSTREAM CG43292 INTERGENIC
X	13739746	X_13739746_DEL [dm3] X_13845713_DEL [dm6]	CTCGATGGTAAAACACTATA...	C	3.537e^-4	0.812	UTR_5_PRIME AMPdeam DOWNSTREAM mamo
2R	20842142	2R_20842142_SNP [dm3] 2R_24954619_SNP [dm6]	A	G	3.538e^-4	0.812	UTR_3_PRIME CG12851 DOWNSTREAM CG12851
2L	18297393	2L_18297393_SNP [dm3] 2L_18297393_SNP [dm6]	G	C	3.539e^-4	0.812	DOWNSTREAM CG5790 INTERGENIC
2L	22021721	2L_22021721_SNP [dm3] 2L_22021721_SNP [dm6]	A	G	3.539e^-4	0.812	NON_SYNONYMOUS_CODING tio	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1790855	2L_1790855_SNP [dm3] 2L_1790855_SNP [dm6]	T	A	3.543e^-4	0.812	SYNONYMOUS_CODING Gr22c UPSTREAM Gr22d
2L	10958723	2L_10958723_DEL [dm3] 2L_10958723_DEL [dm6]	AA	A	3.543e^-4	0.812	INTRON dpr2	TF binding site BDTNP1_TFBS_twi
2R	20871273	2R_20871273_SNP [dm3] 2R_24983750_SNP [dm6]	C	A	3.547e^-4	0.812	UPSTREAM emp INTRON emp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	20822788	2R_20822788_SNP [dm3] 2R_24935265_SNP [dm6]	T	A	3.550e^-4	0.812	INTRON CG30427	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	5798638	2R_5798638_SNP [dm3] 2R_9911133_SNP [dm6]	T	A	3.551e^-4	0.812	UTR_5_PRIME Etf-QO DOWNSTREAM FMRFa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	12247420	2L_12247420_SNP [dm3] 2L_12247420_SNP [dm6]	T	C	3.557e^-4	0.812	INTRON aret
3L	15739277	3L_15739277_SNP [dm3] 3L_15746177_SNP [dm6]	C	T	3.560e^-4	0.812	INTERGENIC
2L	7407340	2L_7407340_SNP [dm3] 2L_7407340_SNP [dm6]	G	T	3.569e^-4	0.812	INTRON CG5177
2L	1790852	2L_1790852_SNP [dm3] 2L_1790852_SNP [dm6]	C	T	3.585e^-4	0.812	SYNONYMOUS_CODING Gr22c UPSTREAM Gr22d
3L	9961262	3L_9961262_SNP [dm3] 3L_9968162_SNP [dm6]	G	C	3.595e^-4	0.812	NON_SYNONYMOUS_CODING CG6685 UPSTREAM Nc DOWNSTREAM CG34356	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	20744785	3R_20744785_SNP [dm3] 3R_24919063_SNP [dm6]	A	G	3.601e^-4	0.812	SYNONYMOUS_CODING CG11168	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5130681	3L_5130681_SNP [dm3] 3L_5137581_SNP [dm6]	G	A	3.607e^-4	0.812	SYNONYMOUS_CODING CG4611	TF binding site mE1_TFBS_chinmo
3L	13129428	3L_13129428_SNP [dm3] 3L_13136328_SNP [dm6]	A	T	3.619e^-4	0.812	NON_SYNONYMOUS_CODING CG33262	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11478250	2L_11478250_SNP [dm3] 2L_11478250_SNP [dm6]	C	T	3.622e^-4	0.812	INTERGENIC
2L	6019547	2L_6019547_SNP [dm3] 2L_6019547_SNP [dm6]	G	T	3.627e^-4	0.812	UPSTREAM H2.0 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14084737	X_14084737_INS [dm3] X_14190704_INS [dm6]	G	GCA	3.628e^-4	0.812	UTR_3_PRIME CG11585 DOWNSTREAM CG13403
2R	12998543	2R_12998543_SNP [dm3] 2R_17111038_SNP [dm6]	T	C	3.632e^-4	0.812	INTRON CG15611	TF binding site mE1_TFBS_inv
2L	19837070	2L_19837070_DEL [dm3] 2L_19837070_DEL [dm6]	GT	G	3.634e^-4	0.812	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5798370	2R_5798370_SNP [dm3] 2R_9910865_SNP [dm6]	G	T	3.636e^-4	0.812	UPSTREAM Etf-QO DOWNSTREAM FMRFa INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	8592217	3L_8592217_SNP [dm3] 3L_8599117_SNP [dm6]	G	C	3.639e^-4	0.812	UTR_3_PRIME CG43078 DOWNSTREAM Nelf-E
2L	19286571	2L_19286571_SNP [dm3] 2L_19286571_SNP [dm6]	C	G	3.642e^-4	0.812	INTERGENIC
2R	17726118	2R_17726118_SNP [dm3] 2R_21838613_SNP [dm6]	C	T	3.645e^-4	0.812	SYNONYMOUS_CODING CG4372
3R	26133843	3R_26133843_MNP [dm3] 3R_30308121_MNP [dm6]	AGCG	GTAT	3.670e^-4	0.812	INTRON hdc
3L	7700482	3L_7700482_DEL [dm3] 3L_7707382_DEL [dm6]	GGTCTGT	G	3.670e^-4	0.812	INTRON CG32373 & 1 other	TF binding site mE1_TFBS_chinmo
3L	19019621	3L_19019621_SNP [dm3] 3L_19026521_SNP [dm6]	G	A	3.672e^-4	0.812	INTRON nkd
3L	8546733	3L_8546733_SNP [dm3] 3L_8553633_SNP [dm6]	G	A	3.681e^-4	0.812	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1714333	3L_1714333_SNP [dm3] 3L_1714333_SNP [dm6]	A	G	3.698e^-4	0.812	SYNONYMOUS_CODING CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2654800	3L_2654800_SNP [dm3] 3L_2654800_SNP [dm6]	G	A	3.717e^-4	0.812	SYNONYMOUS_CODING CG42304 UTR_3_PRIME Snup DOWNSTREAM Fife
2L	9112662	2L_9112662_SNP [dm3] 2L_9112662_SNP [dm6]	G	T	3.719e^-4	0.812	INTRON Or30a
2L	6767679	2L_6767679_SNP [dm3] 2L_6767679_SNP [dm6]	A	G	3.720e^-4	0.812	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_chinmo
2R	3146013	2R_3146013_SNP [dm3] 2R_7258508_SNP [dm6]	C	A	3.726e^-4	0.812	DOWNSTREAM CG1850 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_hkb mE1_TFBS_HSA
2L	8993759	2L_8993759_SNP [dm3] 2L_8993759_SNP [dm6]	C	T	3.727e^-4	0.812	UPSTREAM CG17906 DOWNSTREAM alien & 1 other INTERGENIC
2L	16426051	2L_16426051_SNP [dm3] 2L_16426051_SNP [dm6]	A	T	3.728e^-4	0.812	INTRON CG5888	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9570126	2L_9570126_INS [dm3] 2L_9570126_INS [dm6]	A	AGAAAAA	3.733e^-4	0.812	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10915346	3R_10915346_DEL [dm3] 3R_15089624_DEL [dm6]	CAC	T	3.734e^-4	0.812	INTRON CG6966	TF binding site mE1_TFBS_Trl
2R	18871873	2R_18871873_SNP [dm3] 2R_22984350_SNP [dm6]	G	A	3.735e^-4	0.812	UTR_3_PRIME CG32833 UPSTREAM CG32834 DOWNSTREAM mir-4939
3L	11921068	3L_11921068_SNP [dm3] 3L_11927968_SNP [dm6]	A	C	3.748e^-4	0.812	UTR_5_PRIME byn INTRON CG44837	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	21761049	3L_21761049_SNP [dm3] 3L_21767949_SNP [dm6]	T	C	3.750e^-4	0.812	INTRON Syn1 & 1 other
3R	13103827	3R_13103827_SNP [dm3] 3R_17278105_SNP [dm6]	C	A	3.754e^-4	0.812	INTERGENIC
2L	21898711	2L_21898711_SNP [dm3] 2L_21898711_SNP [dm6]	A	T	3.755e^-4	0.812	UPSTREAM CG11629 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
3R	14972260	3R_14972260_SNP [dm3] 3R_19146538_SNP [dm6]	A	G	3.759e^-4	0.812	INTRON Ppcs
2R	17619059	2R_17619059_SNP [dm3] 2R_21731554_SNP [dm6]	G	T	3.769e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10366911	3L_10366911_SNP [dm3] 3L_10373811_SNP [dm6]	A	C	3.774e^-4	0.812	INTERGENIC
3R	12035624	3R_12035624_SNP [dm3] 3R_16209902_SNP [dm6]	G	C	3.782e^-4	0.812	UPSTREAM CR45639 & 1 other DOWNSTREAM CR45640 & 1 other INTERGENIC
3R	25656227	3R_25656227_SNP [dm3] 3R_29830505_SNP [dm6]	A	G	3.785e^-4	0.812	INTRON Atg16
3R	12183474	3R_12183474_SNP [dm3] 3R_16357752_SNP [dm6]	G	C	3.787e^-4	0.812	UTR_3_PRIME CG17931 UPSTREAM CG10311 DOWNSTREAM CG17931 & 1 other
3R	19445243	3R_19445243_SNP [dm3] 3R_23619521_SNP [dm6]	A	C	3.789e^-4	0.812	INTRON CG31145
X	19873194	X_19873194_INS [dm3] X_19979161_INS [dm6]	T	TT	3.795e^-4	0.812	INTERGENIC
X	1001648	X_1001648_SNP [dm3] X_1107615_SNP [dm6]	C	T	3.795e^-4	0.812	INTRON CG3655
3R	10241685	3R_10241685_SNP [dm3] 3R_14415963_SNP [dm6]	G	T	3.802e^-4	0.812	INTRON cv-c	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3670330	2L_3670330_SNP [dm3] 2L_3670330_SNP [dm6]	C	T	3.803e^-4	0.812	NON_SYNONYMOUS_CODING Sfp24Bc UPSTREAM Sfp24Bb INTRON CG34340
2L	19767601	2L_19767601_SNP [dm3] 2L_19767601_SNP [dm6]	C	T	3.805e^-4	0.812	INTRON bsh	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1791862	2L_1791862_SNP [dm3] 2L_1791862_SNP [dm6]	T	G	3.806e^-4	0.812	UPSTREAM Gr22c DOWNSTREAM Gr22b INTERGENIC	regulatory region REDfly_CRMs
2R	17781520	2R_17781520_SNP [dm3] 2R_21894015_SNP [dm6]	G	T	3.811e^-4	0.812	INTRON Fili
3R	11618379	3R_11618379_SNP [dm3] 3R_15792657_SNP [dm6]	C	T	3.816e^-4	0.812	UPSTREAM Acyp2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx
3R	24710542	3R_24710542_SNP [dm3] 3R_28884820_SNP [dm6]	T	G	3.819e^-4	0.812	SYNONYMOUS_CODING CG14526 INTRON CG33203	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	13729466	2L_13729466_SNP [dm3] 2L_13729466_SNP [dm6]	G	A	3.822e^-4	0.812	INTERGENIC
2R	7064489	2R_7064489_SNP [dm3] 2R_11176984_SNP [dm6]	C	G	3.825e^-4	0.812	INTRON shn
2L	21917165	2L_21917165_SNP [dm3] 2L_21917165_SNP [dm6]	A	C	3.826e^-4	0.812	NON_SYNONYMOUS_CODING CG11634	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19239501	2L_19239501_SNP [dm3] 2L_19239501_SNP [dm6]	C	A	3.827e^-4	0.812	INTERGENIC
3L	11921258	3L_11921258_SNP [dm3] 3L_11928158_SNP [dm6]	C	T	3.831e^-4	0.812	INTRON CG44837 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4710434	X_4710434_SNP [dm3] X_4816401_SNP [dm6]	G	A	3.834e^-4	0.812	INTERGENIC
2L	13687910	2L_13687910_SNP [dm3] 2L_13687910_SNP [dm6]	C	T	3.836e^-4	0.812	INTRON CG31814
2L	3407576	2L_3407576_SNP [dm3] 2L_3407576_SNP [dm6]	A	G	3.841e^-4	0.812	SYNONYMOUS_CODING pgant2
3R	12734863	3R_12734863_SNP [dm3] 3R_16909141_SNP [dm6]	A	C	3.850e^-4	0.812	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22515240	3R_22515240_SNP [dm3] 3R_26689518_SNP [dm6]	T	G	3.859e^-4	0.812	INTERGENIC
3L	11809095	3L_11809095_SNP [dm3] 3L_11815995_SNP [dm6]	C	T	3.859e^-4	0.812	SYNONYMOUS_CODING CG14130 DOWNSTREAM CG5946	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22032834	3R_22032834_SNP [dm3] 3R_26207112_SNP [dm6]	C	T	3.864e^-4	0.812	INTRON CR44320
2R	3693810	2R_3693810_SNP [dm3] 2R_7806305_SNP [dm6]	A	T	3.868e^-4	0.812	START_GAINED Nop17l UTR_5_PRIME Nop17l UPSTREAM sax & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3967956	2L_3967956_SNP [dm3] 2L_3967956_SNP [dm6]	C	G	3.870e^-4	0.812	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	8914992	2R_8914992_SNP [dm3] 2R_13027487_SNP [dm6]	T	C	3.870e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	1585733	3L_1585733_SNP [dm3] 3L_1585733_SNP [dm6]	C	T	3.871e^-4	0.812	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	1969975	2L_1969975_SNP [dm3] 2L_1969975_SNP [dm6]	G	C	3.876e^-4	0.812	START_GAINED erm UTR_5_PRIME erm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	1970009	2L_1970009_SNP [dm3] 2L_1970009_SNP [dm6]	A	G	3.876e^-4	0.812	UTR_5_PRIME erm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	7469438	3L_7469438_SNP [dm3] 3L_7476338_SNP [dm6]	A	T	3.877e^-4	0.812	DOWNSTREAM CG43292 INTERGENIC
3L	18191200	3L_18191200_SNP [dm3] 3L_18198100_SNP [dm6]	G	A	3.880e^-4	0.812	INTERGENIC
X	19934832	X_19934832_SNP [dm3] X_20040799_SNP [dm6]	C	T	3.882e^-4	0.812	INTRON Dop2R
2L	6767676	2L_6767676_SNP [dm3] 2L_6767676_SNP [dm6]	G	A	3.899e^-4	0.812	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_chinmo
3R	5476907	3R_5476907_SNP [dm3] 3R_9651185_SNP [dm6]	T	G	3.900e^-4	0.812	UTR_3_PRIME CG9492 DOWNSTREAM Dh44
2L	9112672	2L_9112672_SNP [dm3] 2L_9112672_SNP [dm6]	T	G	3.906e^-4	0.812	INTRON Or30a
3L	1307073	3L_1307073_SNP [dm3] 3L_1307073_SNP [dm6]	T	A	3.914e^-4	0.812	SYNONYMOUS_CODING CG2277 UTR_5_PRIME CG2277 UPSTREAM CG2469	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12190664	2L_12190664_SNP [dm3] 2L_12190664_SNP [dm6]	C	T	3.918e^-4	0.812	INTRON aret
2R	20728006	2R_20728006_SNP [dm3] 2R_24840483_SNP [dm6]	C	G	3.927e^-4	0.812	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9225504	3L_9225504_SNP [dm3] 3L_9232404_SNP [dm6]	A	G	3.934e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_inv
3R	4440110	3R_4440110_SNP [dm3] 3R_8614388_SNP [dm6]	G	T	3.937e^-4	0.812	INTRON 5-HT2B
2L	21963935	2L_21963935_SNP [dm3] 2L_21963935_SNP [dm6]	T	A	3.939e^-4	0.812	INTERGENIC
2R	20958794	2R_20958794_SNP [dm3] 2R_25071271_SNP [dm6]	G	A	3.948e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19224161	2L_19224161_SNP [dm3] 2L_19224161_SNP [dm6]	G	C	3.954e^-4	0.812	INTERGENIC
2L	16203483	2L_16203483_SNP [dm3] 2L_16203483_SNP [dm6]	T	G	3.955e^-4	0.812	DOWNSTREAM CR44736 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	19238833	2L_19238833_SNP [dm3] 2L_19238833_SNP [dm6]	A	G	3.963e^-4	0.812	INTERGENIC
3R	13101691	3R_13101691_SNP [dm3] 3R_17275969_SNP [dm6]	C	T	3.964e^-4	0.812	INTERGENIC
2L	8781091	2L_8781091_SNP [dm3] 2L_8781091_SNP [dm6]	T	A	3.967e^-4	0.812	DOWNSTREAM CG42710 INTRON CG9468
3R	12163354	3R_12163354_SNP [dm3] 3R_16337632_SNP [dm6]	C	T	3.969e^-4	0.812	INTRON Sulf1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11997433	3R_11997433_SNP [dm3] 3R_16171711_SNP [dm6]	G	T	3.984e^-4	0.812	UTR_3_PRIME CG6006 UPSTREAM CG8925 DOWNSTREAM CG6006
2R	2583495	2R_2583495_SNP [dm3] 2R_6695990_SNP [dm6]	C	G	3.985e^-4	0.812	SYNONYMOUS_CODING Mob4 UPSTREAM Rab2 DOWNSTREAM CG3270	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8692440	3L_8692440_DEL [dm3] 3L_8699340_DEL [dm6]	TT	T	3.987e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_cad
3R	5851389	3R_5851389_SNP [dm3] 3R_10025667_SNP [dm6]	G	T	3.989e^-4	0.812	UPSTREAM Mical & 1 other INTRON Mical
2L	3048435	2L_3048435_SNP [dm3] 2L_3048435_SNP [dm6]	C	A	3.992e^-4	0.812	SPLICE_SITE_REGION v_2_k05816 UPSTREAM snRNA:U5:23D INTRON v_2_k05816	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	1364715	3L_1364715_SNP [dm3] 3L_1364715_SNP [dm6]	C	A	4.002e^-4	0.812	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_HSA mE1_TFBS_Trl
3R	10225060	3R_10225060_SNP [dm3] 3R_14399338_SNP [dm6]	T	C	4.003e^-4	0.812	INTRON cv-c
2L	21970323	2L_21970323_SNP [dm3] 2L_21970323_SNP [dm6]	C	T	4.010e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	22004183	2L_22004183_SNP [dm3] 2L_22004183_SNP [dm6]	G	T	4.018e^-4	0.812	INTERGENIC
2R	2666235	2R_2666235_SNP [dm3] 2R_6778730_SNP [dm6]	T	G	4.026e^-4	0.812	INTRON Epac
2L	21980699	2L_21980699_SNP [dm3] 2L_21980699_SNP [dm6]	G	T	4.030e^-4	0.812	DOWNSTREAM CG2528 INTERGENIC
2R	15902451	2R_15902451_SNP [dm3] 2R_20014946_SNP [dm6]	C	T	4.037e^-4	0.812	DOWNSTREAM CR44629 INTERGENIC
3R	6335486	3R_6335486_SNP [dm3] 3R_10509764_SNP [dm6]	A	C	4.041e^-4	0.812	UTR_3_PRIME hth DOWNSTREAM hth	TF binding site mE1_TFBS_zfh1
2L	19247479	2L_19247479_SNP [dm3] 2L_19247479_SNP [dm6]	C	A	4.045e^-4	0.812	INTERGENIC
2L	19469329	2L_19469329_SNP [dm3] 2L_19469329_SNP [dm6]	C	T	4.045e^-4	0.812	DOWNSTREAM CR45723 EXON CR45722
3R	11859554	3R_11859554_SNP [dm3] 3R_16033832_SNP [dm6]	C	T	4.060e^-4	0.812	UPSTREAM pnr INTRON pnr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15025409	3R_15025409_SNP [dm3] 3R_19199687_SNP [dm6]	A	G	4.063e^-4	0.812	INTRON CG31475
2L	21895847	2L_21895847_SNP [dm3] 2L_21895847_SNP [dm6]	T	C	4.070e^-4	0.812	DOWNSTREAM CR43762 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	14094939	X_14094939_SNP [dm3] X_14200906_SNP [dm6]	T	G	4.072e^-4	0.812	UTR_3_PRIME CG11590 UPSTREAM l_1_G0007 DOWNSTREAM yl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	2848643	3R_2848643_SNP [dm3] 3R_7022921_SNP [dm6]	A	T	4.074e^-4	0.812	INTERGENIC
2L	3694227	2L_3694227_SNP [dm3] 2L_3694227_SNP [dm6]	A	C	4.076e^-4	0.812	UPSTREAM Acp24A4 DOWNSTREAM CG43165 & 1 other EXON CR43364
2R	18979827	2R_18979827_SNP [dm3] 2R_23092304_SNP [dm6]	C	T	4.092e^-4	0.812	INTRON CG9876
3L	2656765	3L_2656765_SNP [dm3] 3L_2656765_SNP [dm6]	G	A	4.098e^-4	0.812	UTR_3_PRIME Fife
2L	13476897	2L_13476897_DEL [dm3] 2L_13476897_DEL [dm6]	CTT	A	4.100e^-4	0.812	INTRON CG42784
2L	19285363	2L_19285363_SNP [dm3] 2L_19285363_SNP [dm6]	T	C	4.111e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1243650	3L_1243650_SNP [dm3] 3L_1243650_SNP [dm6]	T	A	4.122e^-4	0.812	INTRON Klp61F
2R	16750248	2R_16750248_SNP [dm3] 2R_20862743_SNP [dm6]	G	A	4.126e^-4	0.812	INTERGENIC
3R	16295315	3R_16295315_SNP [dm3] 3R_20469593_SNP [dm6]	T	G	4.131e^-4	0.812	INTRON Gfrl
2L	9032711	2L_9032711_SNP [dm3] 2L_9032711_SNP [dm6]	T	G	4.132e^-4	0.812	UPSTREAM CG9582 & 1 other INTERGENIC
2L	13735512	2L_13735512_SNP [dm3] 2L_13735512_SNP [dm6]	T	A	4.136e^-4	0.812	UPSTREAM CG31813 INTERGENIC
2L	15084737	2L_15084737_SNP [dm3] 2L_15084737_SNP [dm6]	G	C	4.139e^-4	0.812	INTRON CG15270
2L	21893680	2L_21893680_SNP [dm3] 2L_21893680_SNP [dm6]	A	T	4.140e^-4	0.812	UPSTREAM CR43762 INTERGENIC
2L	21893692	2L_21893692_SNP [dm3] 2L_21893692_SNP [dm6]	A	T	4.140e^-4	0.812	UPSTREAM CR43762 INTERGENIC
2L	21960786	2L_21960786_SNP [dm3] 2L_21960786_SNP [dm6]	T	C	4.140e^-4	0.812	UPSTREAM CR44804 INTERGENIC
2L	21972623	2L_21972623_SNP [dm3] 2L_21972623_SNP [dm6]	C	T	4.140e^-4	0.812	INTERGENIC
2L	22009604	2L_22009604_SNP [dm3] 2L_22009604_SNP [dm6]	G	T	4.140e^-4	0.812	INTERGENIC	transposable element FlyBase
3L	4746875	3L_4746875_INS [dm3] 3L_4746875_INS [dm6]	A	AA	4.143e^-4	0.812	UPSTREAM CR43882 INTRON RhoGEF64C
2L	9112676	2L_9112676_SNP [dm3] 2L_9112676_SNP [dm6]	T	A	4.148e^-4	0.812	INTRON Or30a
2L	17323472	2L_17323472_SNP [dm3] 2L_17323472_SNP [dm6]	A	T	4.162e^-4	0.812	INTERGENIC
3L	9275617	3L_9275617_SNP [dm3] 3L_9282517_SNP [dm6]	T	C	4.162e^-4	0.812	INTRON GluRIB
2L	10226967	2L_10226967_SNP [dm3] 2L_10226967_SNP [dm6]	A	G	4.175e^-4	0.812	UPSTREAM CG5708 DOWNSTREAM CG5694 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	11618204	3R_11618204_SNP [dm3] 3R_15792482_SNP [dm6]	A	C	4.176e^-4	0.812	UPSTREAM Acyp2 INTRON c_3_G	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx
2L	5883922	2L_5883922_SNP [dm3] 2L_5883922_SNP [dm6]	C	T	4.181e^-4	0.812	SYNONYMOUS_CODING CG44574 UPSTREAM CG43185 DOWNSTREAM Sfp26Ac
3L	18284180	3L_18284180_SNP [dm3] 3L_18291080_SNP [dm6]	C	T	4.182e^-4	0.812	INTERGENIC
3L	12843211	3L_12843211_SNP [dm3] 3L_12850111_SNP [dm6]	T	A	4.184e^-4	0.812	UTR_5_PRIME CG10948 UPSTREAM Wbp2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10986629	3L_10986629_SNP [dm3] 3L_10993529_SNP [dm6]	A	G	4.185e^-4	0.812	INTRON klu
2R	20742718	2R_20742718_SNP [dm3] 2R_24855195_SNP [dm6]	T	A	4.191e^-4	0.812	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	18652141	2L_18652141_SNP [dm3] 2L_18652141_SNP [dm6]	T	A	4.191e^-4	0.812	SYNONYMOUS_CODING Cyp310a1 INTRON MESR3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5833360	3R_5833360_SNP [dm3] 3R_10007638_SNP [dm6]	C	T	4.194e^-4	0.812	SYNONYMOUS_CODING Mical UTR_3_PRIME Mical	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14043245	X_14043245_SNP [dm3] X_14149212_SNP [dm6]	A	C	4.199e^-4	0.812	INTERGENIC
2R	13604006	2R_13604006_SNP [dm3] 2R_17716501_SNP [dm6]	T	C	4.205e^-4	0.812	START_GAINED CG6424 UTR_5_PRIME CG6424 UPSTREAM CG6424	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8280421	2R_8280421_SNP [dm3] 2R_12392916_SNP [dm6]	C	G	4.208e^-4	0.812	UPSTREAM Or49a INTERGENIC
2L	19211063	2L_19211063_SNP [dm3] 2L_19211063_SNP [dm6]	T	A	4.208e^-4	0.812	INTERGENIC
2R	11839351	2R_11839351_SNP [dm3] 2R_15951846_SNP [dm6]	T	A	4.210e^-4	0.812	UPSTREAM Strn-Mlck INTRON Strn-Mlck
2R	491503	2R_491503_SNP [dm3] 2R_4603998_SNP [dm6]	G	T	4.211e^-4	0.812	INTRON p120ctn	transposable element FlyBase
3L	11367839	3L_11367839_SNP [dm3] 3L_11374739_SNP [dm6]	C	T	4.212e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	9567386	2L_9567386_SNP [dm3] 2L_9567386_SNP [dm6]	A	C	4.214e^-4	0.812	UPSTREAM jp DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	4595388	3R_4595388_SNP [dm3] 3R_8769666_SNP [dm6]	G	A	4.219e^-4	0.812	SYNONYMOUS_CODING CG8236
3R	9607094	3R_9607094_SNP [dm3] 3R_13781372_SNP [dm6]	C	T	4.220e^-4	0.812	SPLICE_SITE_REGION CG9286 UPSTREAM Dip-B DOWNSTREAM CG9288 & 1 other INTRON CG9286	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	13115437	3R_13115437_SNP [dm3] 3R_17289715_SNP [dm6]	T	A	4.228e^-4	0.812	DOWNSTREAM CR43490 INTERGENIC
2L	9464990	2L_9464990_DEL [dm3] 2L_9464990_DEL [dm6]	AATGCAGTTGGCTGAAACTG...	G	4.230e^-4	0.812	DOWNSTREAM numb INTERGENIC	TF binding site mE1_TFBS_bab1
2L	22004332	2L_22004332_SNP [dm3] 2L_22004332_SNP [dm6]	C	T	4.235e^-4	0.812	INTERGENIC	transposable element FlyBase
3R	22738756	3R_22738756_SNP [dm3] 3R_26913034_SNP [dm6]	T	A	4.238e^-4	0.812	UPSTREAM Ets97D INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	1067794	2R_1067794_SNP [dm3] 2R_5180289_SNP [dm6]	A	G	4.238e^-4	0.812	INTRON Nipped-A
2L	14797689	2L_14797689_SNP [dm3] 2L_14797689_SNP [dm6]	A	T	4.241e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	16893415	3R_16893415_SNP [dm3] 3R_21067693_SNP [dm6]	A	G	4.248e^-4	0.812	INTRON AnxB9	TF binding site mE1_TFBS_HSA
2L	12262993	2L_12262993_SNP [dm3] 2L_12262993_SNP [dm6]	T	C	4.248e^-4	0.812	INTRON aret
2L	21955578	2L_21955578_SNP [dm3] 2L_21955578_SNP [dm6]	C	A	4.250e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	21991889	2L_21991889_SNP [dm3] 2L_21991889_SNP [dm6]	G	C	4.251e^-4	0.812	NON_SYNONYMOUS_CODING CG2528	TF binding site mE1_TFBS_HSA
3R	11619874	3R_11619874_SNP [dm3] 3R_15794152_SNP [dm6]	T	C	4.255e^-4	0.812	UTR_5_PRIME nsl1 DOWNSTREAM Acyp2 INTRON nsl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	16352111	2R_16352111_SNP [dm3] 2R_20464606_SNP [dm6]	C	T	4.271e^-4	0.812	INTRON CG12484
3L	1879831	3L_1879831_SNP [dm3] 3L_1879831_SNP [dm6]	G	A	4.275e^-4	0.812	INTRON CG13937
3R	19050403	3R_19050403_SNP [dm3] 3R_23224681_SNP [dm6]	T	A	4.277e^-4	0.812	INTRON cnc
2L	8993785	2L_8993785_SNP [dm3] 2L_8993785_SNP [dm6]	C	G	4.281e^-4	0.812	UPSTREAM CG17906 DOWNSTREAM alien & 1 other INTERGENIC
3L	7469395	3L_7469395_SNP [dm3] 3L_7476295_SNP [dm6]	A	C	4.289e^-4	0.812	DOWNSTREAM CG43292 INTERGENIC
3R	18532211	3R_18532211_SNP [dm3] 3R_22706489_SNP [dm6]	A	G	4.290e^-4	0.812	SYNONYMOUS_CODING CG13842
3R	22665717	3R_22665717_SNP [dm3] 3R_26839995_SNP [dm6]	C	T	4.291e^-4	0.812	SYNONYMOUS_CODING Tl
3R	20960624	3R_20960624_SNP [dm3] 3R_25134902_SNP [dm6]	T	G	4.294e^-4	0.812	INTRON Bili	TF binding site BDTNP1_TFBS_bcd
3R	5890399	3R_5890399_SNP [dm3] 3R_10064677_SNP [dm6]	G	A	4.296e^-4	0.812	DOWNSTREAM CG33631 INTERGENIC
3L	7469397	3L_7469397_MNP [dm3] 3L_7476297_MNP [dm6]	ATA	TAG	4.297e^-4	0.812	DOWNSTREAM CG43292 INTERGENIC
2R	11327910	2R_11327910_SNP [dm3] 2R_15440405_SNP [dm6]	T	C	4.299e^-4	0.812	INTRON CG43729
3R	12162118	3R_12162118_SNP [dm3] 3R_16336396_SNP [dm6]	A	G	4.311e^-4	0.812	INTRON Sulf1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	12734829	3R_12734829_SNP [dm3] 3R_16909107_SNP [dm6]	A	T	4.318e^-4	0.812	INTRON iab-8	TF binding site BDTNP1_TFBS_dl
3R	12734833	3R_12734833_DEL [dm3] 3R_16909111_DEL [dm6]	TCT	T	4.318e^-4	0.812	INTRON iab-8	TF binding site BDTNP1_TFBS_dl
2L	19470776	2L_19470776_SNP [dm3] 2L_19470776_SNP [dm6]	G	A	4.324e^-4	0.812	UPSTREAM CR45723 DOWNSTREAM CR43839 & 1 other INTERGENIC
2L	17995747	2L_17995747_SNP [dm3] 2L_17995747_SNP [dm6]	C	T	4.324e^-4	0.812	INTERGENIC
2L	19905884	2L_19905884_SNP [dm3] 2L_19905884_SNP [dm6]	A	C	4.329e^-4	0.812	INTRON sick
X	15262817	X_15262817_DEL [dm3] X_15368784_DEL [dm6]	GG	G	4.329e^-4	0.812	INTRON acj6
3R	12504233	3R_12504233_SNP [dm3] 3R_16678511_SNP [dm6]	A	G	4.336e^-4	0.812	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	1717286	3L_1717286_SNP [dm3] 3L_1717286_SNP [dm6]	C	G	4.339e^-4	0.812	SYNONYMOUS_CODING drpr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9823760	3R_9823760_SNP [dm3] 3R_13998038_SNP [dm6]	T	C	4.342e^-4	0.812	INTRON rdx	TF binding site mE1_TFBS_HSA
3L	11922572	3L_11922572_SNP [dm3] 3L_11929472_SNP [dm6]	G	A	4.343e^-4	0.812	INTRON CG44837 & 1 other
2L	21940953	2L_21940953_SNP [dm3] 2L_21940953_SNP [dm6]	A	G	4.345e^-4	0.812	INTERGENIC
3L	718514	3L_718514_SNP [dm3] 3L_718514_SNP [dm6]	A	G	4.354e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7469419	3L_7469419_SNP [dm3] 3L_7476319_SNP [dm6]	C	A	4.360e^-4	0.812	DOWNSTREAM CG43292 INTERGENIC
X	21118529	X_21118529_SNP [dm3] X_21247502_SNP [dm6]	T	A	4.360e^-4	0.812	INTRON CG32521
3R	18229976	3R_18229976_SNP [dm3] 3R_22404254_SNP [dm6]	C	A	4.369e^-4	0.812	INTRON CG13856
2L	17323360	2L_17323360_SNP [dm3] 2L_17323360_SNP [dm6]	T	G	4.372e^-4	0.812	INTERGENIC
2R	4165711	2R_4165711_SNP [dm3] 2R_8278206_SNP [dm6]	T	G	4.373e^-4	0.812	DOWNSTREAM CR44280 INTERGENIC
2R	20895317	2R_20895317_SNP [dm3] 2R_25007794_SNP [dm6]	C	T	4.377e^-4	0.812	INTRON zip	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	11619621	3R_11619621_SNP [dm3] 3R_15793899_SNP [dm6]	T	G	4.380e^-4	0.812	UTR_5_PRIME nsl1 DOWNSTREAM Acyp2 INTRON nsl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	22683460	3R_22683460_SNP [dm3] 3R_26857738_SNP [dm6]	G	A	4.382e^-4	0.812	INTRON Lerp
2L	9812307	2L_9812307_SNP [dm3] 2L_9812307_SNP [dm6]	G	A	4.385e^-4	0.812	INTRON nAChRalpha6
3L	4674774	3L_4674774_SNP [dm3] 3L_4674774_SNP [dm6]	T	G	4.398e^-4	0.812	INTRON axo	TF binding site mE1_TFBS_inv
3L	10880311	3L_10880311_SNP [dm3] 3L_10887211_SNP [dm6]	G	T	4.398e^-4	0.812	UPSTREAM CG6404 INTERGENIC
2R	13847582	2R_13847582_SNP [dm3] 2R_17960077_SNP [dm6]	A	G	4.398e^-4	0.812	INTERGENIC
2R	575416	2R_575416_SNP [dm3] 2R_4687911_SNP [dm6]	C	A	4.399e^-4	0.812	INTERGENIC
2R	577832	2R_577832_SNP [dm3] 2R_4690327_SNP [dm6]	C	A	4.399e^-4	0.812	INTERGENIC	transposable element FlyBase
2R	593026	2R_593026_SNP [dm3] 2R_4705521_SNP [dm6]	G	A	4.399e^-4	0.812	INTRON Nipped-B	transposable element FlyBase
2L	9570219	2L_9570219_SNP [dm3] 2L_9570219_SNP [dm6]	A	C	4.402e^-4	0.812	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10622289	2L_10622289_SNP [dm3] 2L_10622289_SNP [dm6]	G	T	4.403e^-4	0.812	INTRON Trim9
2L	9562155	2L_9562155_INS [dm3] 2L_9562155_INS [dm6]	A	ATATTCCTTAACGACA...	4.408e^-4	0.812	INTRON jp
3R	22665753	3R_22665753_SNP [dm3] 3R_26840031_SNP [dm6]	G	A	4.408e^-4	0.812	SYNONYMOUS_CODING Tl
2R	8250686	2R_8250686_SNP [dm3] 2R_12363181_SNP [dm6]	C	T	4.412e^-4	0.812	UPSTREAM CR33013 DOWNSTREAM CG30043 INTERGENIC
X	12295609	X_12295609_SNP [dm3] X_12401576_SNP [dm6]	G	A	4.413e^-4	0.812	INTERGENIC
2R	3008079	2R_3008079_SNP [dm3] 2R_7120574_SNP [dm6]	C	A	4.418e^-4	0.812	SYNONYMOUS_CODING esn
2R	5123109	2R_5123109_SNP [dm3] 2R_9235604_SNP [dm6]	A	C	4.424e^-4	0.812	INTRON hig	TF binding site mE1_TFBS_chinmo
X	16855733	X_16855733_SNP [dm3] X_16961700_SNP [dm6]	G	T	4.426e^-4	0.812	INTRON CG9086	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	10919188	3R_10919188_SNP [dm3] 3R_15093466_SNP [dm6]	C	T	4.433e^-4	0.812	INTRON CG6966	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	16644084	3R_16644084_SNP [dm3] 3R_20818362_SNP [dm6]	G	C	4.435e^-4	0.812	DOWNSTREAM CG17271 INTRON CG17270
2L	19286705	2L_19286705_SNP [dm3] 2L_19286705_SNP [dm6]	A	G	4.447e^-4	0.812	INTERGENIC
2R	19128011	2R_19128011_SNP [dm3] 2R_23240488_SNP [dm6]	T	C	4.448e^-4	0.812	INTERGENIC
2R	19964130	2R_19964130_SNP [dm3] 2R_24076607_SNP [dm6]	T	C	4.450e^-4	0.812	SPLICE_SITE_REGION Mlp60A DOWNSTREAM Mlp60A INTRON Mlp60A	TF binding site mE1_TFBS_cad
2L	9270547	2L_9270547_SNP [dm3] 2L_9270547_SNP [dm6]	A	G	4.454e^-4	0.812	INTRON Ggamma30A	TF binding site mE1_TFBS_HSA
2R	15175399	2R_15175399_SNP [dm3] 2R_19287894_SNP [dm6]	G	T	4.455e^-4	0.812	UPSTREAM CG18606 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	15175401	2R_15175401_SNP [dm3] 2R_19287896_SNP [dm6]	T	C	4.455e^-4	0.812	UPSTREAM CG18606 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	20714964	2L_20714964_SNP [dm3] 2L_20714964_SNP [dm6]	C	T	4.463e^-4	0.812	UPSTREAM Hr38 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12077068	3R_12077068_SNP [dm3] 3R_16251346_SNP [dm6]	G	A	4.478e^-4	0.812	INTRON tara	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8802216	3L_8802216_SNP [dm3] 3L_8809116_SNP [dm6]	T	C	4.483e^-4	0.812	DOWNSTREAM CG32024 INTRON CG13308
3R	23441387	3R_23441387_SNP [dm3] 3R_27615665_SNP [dm6]	T	A	4.484e^-4	0.812	INTRON Tusp

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.558e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.02835
In_2R_NS	0.08056
In_3R_K	0.01750

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	7.5179	0.0233

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1959 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	23513340	3R_23513340_SNP [dm3] 3R_27687618_SNP [dm6]	C	T	9.877e^-7	0.913	NON_SYNONYMOUS_CODING CG31055 INTRON CG12880	TF binding site mE1_TFBS_chinmo
X	12021418	X_12021418_INS [dm3] X_12127385_INS [dm6]	A	AAA	1.701e^-6	0.913	UPSTREAM Ten-a INTRON Ten-a
3L	722590	3L_722590_SNP [dm3] 3L_722590_SNP [dm6]	A	T	3.892e^-6	0.913	INTERGENIC
2L	13610291	2L_13610291_SNP [dm3] 2L_13610291_SNP [dm6]	C	T	5.668e^-6	0.913	NON_SYNONYMOUS_CODING kuz DOWNSTREAM mir-2489
2R	14932148	2R_14932148_DEL [dm3] 2R_19044643_DEL [dm6]	AA	A	5.670e^-6	0.913	INTERGENIC
X	21081254	X_21081254_SNP [dm3] X_21210227_SNP [dm6]	T	A	6.275e^-6	0.913	INTRON CG32521
3R	9608297	3R_9608297_SNP [dm3] 3R_13782575_SNP [dm6]	C	T	7.643e^-6	0.913	UPSTREAM Dip-B DOWNSTREAM CG9286 INTRON Dip-B
3R	10054017	3R_10054017_SNP [dm3] 3R_14228295_SNP [dm6]	G	A	9.249e^-6	0.913	NON_SYNONYMOUS_CODING CG9624
2R	17920188	2R_17920188_DEL [dm3] 2R_22032683_DEL [dm6]	GGGCTGG	G	9.368e^-6	0.913	INTRON CG34370
X	10196166	X_10196166_SNP [dm3] X_10302133_SNP [dm6]	G	A	9.459e^-6	0.913	INTRON alpha-Man-I
2L	3839348	2L_3839348_SNP [dm3] 2L_3839348_SNP [dm6]	A	C	9.779e^-6	0.913	DOWNSTREAM slp2 INTERGENIC	regulatory region REDfly_CRMs
3L	8547757	3L_8547757_SNP [dm3] 3L_8554657_SNP [dm6]	A	T	1.069e^-5	0.913	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16294728	3R_16294728_SNP [dm3] 3R_20469006_SNP [dm6]	C	T	1.173e^-5	0.913	INTRON Gfrl
X	15738163	X_15738163_SNP [dm3] X_15844130_SNP [dm6]	C	A	1.198e^-5	0.913	START_GAINED Aats-arg UTR_5_PRIME Aats-arg UPSTREAM CG8578	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3R	16294815	3R_16294815_SNP [dm3] 3R_20469093_SNP [dm6]	G	A	1.266e^-5	0.913	INTRON Gfrl
2R	20909411	2R_20909411_SNP [dm3] 2R_25021888_SNP [dm6]	T	A	1.413e^-5	0.913	INTRON uzip
3R	9317965	3R_9317965_SNP [dm3] 3R_13492243_SNP [dm6]	G	A	1.444e^-5	0.913	INTERGENIC	TF binding site mE1_TFBS_inv
2L	8347374	2L_8347374_SNP [dm3] 2L_8347374_SNP [dm6]	C	T	1.453e^-5	0.913	INTRON CG7778
3R	11859952	3R_11859952_SNP [dm3] 3R_16034230_SNP [dm6]	G	A	1.567e^-5	0.913	UPSTREAM pnr INTRON pnr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18478815	3R_18478815_SNP [dm3] 3R_22653093_SNP [dm6]	T	C	1.587e^-5	0.913	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18478788	3R_18478788_SNP [dm3] 3R_22653066_SNP [dm6]	G	A	1.600e^-5	0.913	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6584108	3L_6584108_SNP [dm3] 3L_6591008_SNP [dm6]	T	G	1.603e^-5	0.913	INTRON CG18769
3L	723475	3L_723475_SNP [dm3] 3L_723475_SNP [dm6]	T	A	1.766e^-5	0.913	INTERGENIC
3R	13094958	3R_13094958_SNP [dm3] 3R_17269236_SNP [dm6]	C	T	1.917e^-5	0.913	INTERGENIC
2L	21929216	2L_21929216_SNP [dm3] 2L_21929216_SNP [dm6]	A	G	1.999e^-5	0.913	INTERGENIC
3R	12873865	3R_12873865_SNP [dm3] 3R_17048143_SNP [dm6]	T	A	2.001e^-5	0.913	UTR_3_PRIME Patr-1 DOWNSTREAM Patr-1	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	13197931	3R_13197931_SNP [dm3] 3R_17372209_SNP [dm6]	C	G	2.013e^-5	0.913	UPSTREAM CR44256 INTERGENIC
3L	722584	3L_722584_SNP [dm3] 3L_722584_SNP [dm6]	T	G	2.079e^-5	0.913	INTERGENIC
3R	13139061	3R_13139061_SNP [dm3] 3R_17313339_SNP [dm6]	G	T	2.320e^-5	0.913	INTERGENIC
2R	18000888	2R_18000888_SNP [dm3] 2R_22113383_SNP [dm6]	A	G	2.354e^-5	0.913	UPSTREAM CG30280 & 1 other INTRON Vrp1
2L	9570049	2L_9570049_SNP [dm3] 2L_9570049_SNP [dm6]	C	G	2.390e^-5	0.913	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7278223	3L_7278223_SNP [dm3] 3L_7285123_SNP [dm6]	T	G	2.485e^-5	0.913	UTR_5_PRIME unc-13-4A	TF binding site mE1_TFBS_cad
3L	6727499	3L_6727499_SNP [dm3] 3L_6734399_SNP [dm6]	A	G	2.564e^-5	0.913	SYNONYMOUS_CODING dikar	TF binding site mE1_TFBS_HSA
3L	8547701	3L_8547701_SNP [dm3] 3L_8554601_SNP [dm6]	A	G	2.700e^-5	0.913	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8547718	3L_8547718_SNP [dm3] 3L_8554618_SNP [dm6]	C	A	2.700e^-5	0.913	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10923261	3L_10923261_SNP [dm3] 3L_10930161_SNP [dm6]	C	T	2.802e^-5	0.913	INTERGENIC
3R	23441415	3R_23441415_SNP [dm3] 3R_27615693_SNP [dm6]	A	C	2.834e^-5	0.913	INTRON Tusp
3L	6735735	3L_6735735_SNP [dm3] 3L_6742635_SNP [dm6]	G	T	2.949e^-5	0.913	INTRON dikar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	19906504	X_19906504_SNP [dm3] X_20012471_SNP [dm6]	G	T	2.954e^-5	0.913	INTRON Dop2R
3L	8547231	3L_8547231_SNP [dm3] 3L_8554131_SNP [dm6]	C	A	2.999e^-5	0.913	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	3261299	2R_3261299_DEL [dm3] 2R_7373794_DEL [dm6]	TGAAT	T	3.276e^-5	0.913	INTRON Dscam1	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	10940970	3R_10940970_SNP [dm3] 3R_15115248_SNP [dm6]	G	T	3.408e^-5	0.913	INTRON CG42788
3R	11635316	3R_11635316_SNP [dm3] 3R_15809594_SNP [dm6]	C	T	3.434e^-5	0.913	UPSTREAM alpha-Man-IIb INTRON alpha-Man-IIb
2R	10578635	2R_10578635_SNP [dm3] 2R_14691130_SNP [dm6]	T	C	3.457e^-5	0.913	INTRON mspo
2R	6141472	2R_6141472_SNP [dm3] 2R_10253967_SNP [dm6]	C	T	3.480e^-5	0.913	SYNONYMOUS_CODING CG12913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	13469687	3R_13469687_SNP [dm3] 3R_17643965_SNP [dm6]	C	A	3.498e^-5	0.913	UPSTREAM CG43175 INTRON CG43175
2L	1660285	2L_1660285_SNP [dm3] 2L_1660285_SNP [dm6]	C	A	3.514e^-5	0.913	INTRON chinmo
2L	5210904	2L_5210904_SNP [dm3] 2L_5210904_SNP [dm6]	A	G	3.532e^-5	0.913	INTRON Cyp28d1
2R	12580013	2R_12580013_SNP [dm3] 2R_16692508_SNP [dm6]	C	A	3.628e^-5	0.913	SYNONYMOUS_CODING CG5210 INTRON CG30463	TF binding site mE1_TFBS_cad
3L	10610526	3L_10610526_SNP [dm3] 3L_10617426_SNP [dm6]	C	G	3.735e^-5	0.913	INTERGENIC
2R	20097816	2R_20097816_SNP [dm3] 2R_24210293_SNP [dm6]	C	T	3.755e^-5	0.913	INTERGENIC
2R	15925300	2R_15925300_SNP [dm3] 2R_20037795_SNP [dm6]	A	C	3.870e^-5	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	16294550	3R_16294550_SNP [dm3] 3R_20468828_SNP [dm6]	C	A	4.026e^-5	0.913	INTRON Gfrl
2R	10837352	2R_10837352_SNP [dm3] 2R_14949847_SNP [dm6]	A	G	4.078e^-5	0.913	UPSTREAM aPKC INTRON aPKC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	3756292	2L_3756292_SNP [dm3] 2L_3756292_SNP [dm6]	C	A	4.137e^-5	0.913	UPSTREAM CG43707 INTERGENIC
2R	5846641	2R_5846641_SNP [dm3] 2R_9959136_SNP [dm6]	T	C	4.184e^-5	0.913	UTR_3_PRIME CG15863 UPSTREAM Pal1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	9570118	2L_9570118_SNP [dm3] 2L_9570118_SNP [dm6]	A	T	4.198e^-5	0.913	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11708446	3L_11708446_SNP [dm3] 3L_11715346_SNP [dm6]	A	G	4.218e^-5	0.913	UPSTREAM CG14132 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	723516	3L_723516_SNP [dm3] 3L_723516_SNP [dm6]	C	G	4.286e^-5	0.913	INTERGENIC
2L	2427459	2L_2427459_SNP [dm3] 2L_2427459_SNP [dm6]	A	T	4.293e^-5	0.913	UPSTREAM dpp EXON CR44912
3R	10122680	3R_10122680_SNP [dm3] 3R_14296958_SNP [dm6]	T	A	4.317e^-5	0.913	INTRON CG12207
3L	6076463	3L_6076463_SNP [dm3] 3L_6083363_SNP [dm6]	C	G	4.358e^-5	0.913	DOWNSTREAM CG6619 INTRON CG13293	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13107546	2L_13107546_SNP [dm3] 2L_13107546_SNP [dm6]	G	T	4.388e^-5	0.913	NON_SYNONYMOUS_CODING CG5142	TF binding site mE1_TFBS_chinmo
2R	18245422	2R_18245422_SNP [dm3] 2R_22357917_SNP [dm6]	A	G	4.591e^-5	0.913	INTRON Liprin-gamma	transposable element FlyBase
3L	18350534	3L_18350534_SNP [dm3] 3L_18357434_SNP [dm6]	T	C	4.639e^-5	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26098869	3R_26098869_SNP [dm3] 3R_30273147_SNP [dm6]	A	C	4.688e^-5	0.913	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	21081260	X_21081260_SNP [dm3] X_21210233_SNP [dm6]	G	T	4.771e^-5	0.913	INTRON CG32521
3L	2649575	3L_2649575_SNP [dm3] 3L_2649575_SNP [dm6]	A	G	4.846e^-5	0.913	NON_SYNONYMOUS_CODING CG1246 DOWNSTREAM Aats-pro
2R	3261295	2R_3261295_SNP [dm3] 2R_7373790_SNP [dm6]	C	T	4.903e^-5	0.913	INTRON Dscam1	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6727199	3L_6727199_SNP [dm3] 3L_6734099_SNP [dm6]	C	T	4.962e^-5	0.913	SYNONYMOUS_CODING dikar	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18476602	2L_18476602_SNP [dm3] 2L_18476602_SNP [dm6]	G	T	4.995e^-5	0.913	INTRON CG10283	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	12035624	3R_12035624_SNP [dm3] 3R_16209902_SNP [dm6]	G	C	4.998e^-5	0.913	UPSTREAM CR45639 & 1 other DOWNSTREAM CR45640 & 1 other INTERGENIC
3L	2649565	3L_2649565_SNP [dm3] 3L_2649565_SNP [dm6]	A	G	5.203e^-5	0.913	SYNONYMOUS_CODING CG1246 DOWNSTREAM Aats-pro
3R	7353515	3R_7353515_SNP [dm3] 3R_11527793_SNP [dm6]	T	A	5.210e^-5	0.913	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17920198	2R_17920198_SNP [dm3] 2R_22032693_SNP [dm6]	T	G	5.271e^-5	0.913	INTRON CG34370
3R	23451281	3R_23451281_SNP [dm3] 3R_27625559_SNP [dm6]	T	G	5.288e^-5	0.913	INTRON Tusp & 1 other
2R	20572511	2R_20572511_SNP [dm3] 2R_24684988_SNP [dm6]	A	G	5.291e^-5	0.913	UTR_5_PRIME Mmp1 INTRON Mmp1
3R	9318024	3R_9318024_SNP [dm3] 3R_13492302_SNP [dm6]	C	A	5.505e^-5	0.913	INTERGENIC
3L	2654800	3L_2654800_SNP [dm3] 3L_2654800_SNP [dm6]	G	A	5.532e^-5	0.913	SYNONYMOUS_CODING CG42304 UTR_3_PRIME Snup DOWNSTREAM Fife
2L	21914973	2L_21914973_SNP [dm3] 2L_21914973_SNP [dm6]	T	C	5.534e^-5	0.913	SPLICE_SITE_REGION CG31600 INTRON CG31600
2R	5131935	2R_5131935_SNP [dm3] 2R_9244430_SNP [dm6]	T	G	5.549e^-5	0.913	DOWNSTREAM Cyp4p3 INTRON hig
2L	9570147	2L_9570147_INS [dm3] 2L_9570147_INS [dm6]	A	AC	5.666e^-5	0.913	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2649550	3L_2649550_SNP [dm3] 3L_2649550_SNP [dm6]	G	T	5.677e^-5	0.913	SYNONYMOUS_CODING CG1246 DOWNSTREAM Aats-pro
2R	17725920	2R_17725920_SNP [dm3] 2R_21838415_SNP [dm6]	C	T	5.743e^-5	0.913	SYNONYMOUS_CODING CG4372
3R	11859578	3R_11859578_SNP [dm3] 3R_16033856_SNP [dm6]	C	T	5.761e^-5	0.913	UPSTREAM pnr INTRON pnr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9324791	2R_9324791_SNP [dm3] 2R_13437286_SNP [dm6]	C	G	5.816e^-5	0.913	UTR_5_PRIME CG42321 UPSTREAM tRNA:CR30509 INTRON CG42321
3L	7291341	3L_7291341_DEL [dm3] 3L_7298241_DEL [dm6]	GG	G	5.822e^-5	0.913	INTRON unc-13-4A
3L	14142384	3L_14142384_SNP [dm3] 3L_14149284_SNP [dm6]	T	A	5.840e^-5	0.913	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	16074684	3L_16074684_SNP [dm3] 3L_16081584_SNP [dm6]	G	A	5.843e^-5	0.913	UTR_3_PRIME Mbs UPSTREAM CG33258 DOWNSTREAM Mbs
2L	2912840	2L_2912840_SNP [dm3] 2L_2912840_SNP [dm6]	A	T	5.849e^-5	0.913	UTR_5_PRIME lilli INTRON lilli
3L	1714888	3L_1714888_SNP [dm3] 3L_1714888_SNP [dm6]	C	T	5.978e^-5	0.913	SYNONYMOUS_CODING CG7991 DOWNSTREAM drpr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	13258169	X_13258169_SNP [dm3] X_13364136_SNP [dm6]	A	G	5.996e^-5	0.913	NON_SYNONYMOUS_CODING Syt12	TF binding site BDTNP1_TFBS_sna
2R	16537615	2R_16537615_SNP [dm3] 2R_20650110_SNP [dm6]	A	T	6.058e^-5	0.913	INTRON Lrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	1953830	2L_1953830_SNP [dm3] 2L_1953830_SNP [dm6]	C	A	6.061e^-5	0.913	INTRON erm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9570169	2L_9570169_SNP [dm3] 2L_9570169_SNP [dm6]	A	G	6.143e^-5	0.913	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19911540	2R_19911540_SNP [dm3] 2R_24024017_SNP [dm6]	A	G	6.150e^-5	0.913	UPSTREAM Adk2 DOWNSTREAM CR45350 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15556193	2R_15556193_SNP [dm3] 2R_19668688_SNP [dm6]	A	G	6.170e^-5	0.913	INTRON hrg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
2L	9570296	2L_9570296_SNP [dm3] 2L_9570296_SNP [dm6]	A	C	6.177e^-5	0.913	UTR_5_PRIME CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16294225	3R_16294225_SNP [dm3] 3R_20468503_SNP [dm6]	G	A	6.182e^-5	0.913	INTRON Gfrl
3R	11859120	3R_11859120_SNP [dm3] 3R_16033398_SNP [dm6]	G	T	6.230e^-5	0.913	INTRON pnr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	5525270	3L_5525270_SNP [dm3] 3L_5532170_SNP [dm6]	G	A	6.267e^-5	0.913	INTERGENIC
2R	3261289	2R_3261289_SNP [dm3] 2R_7373784_SNP [dm6]	T	A	6.272e^-5	0.913	INTRON Dscam1	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16294229	3R_16294229_SNP [dm3] 3R_20468507_SNP [dm6]	C	T	6.310e^-5	0.913	INTRON Gfrl
3R	4266695	3R_4266695_SNP [dm3] 3R_8440973_SNP [dm6]	G	A	6.342e^-5	0.913	INTRON CG45263
2R	20889947	2R_20889947_SNP [dm3] 2R_25002424_SNP [dm6]	A	G	6.377e^-5	0.913	SYNONYMOUS_CODING zip
2L	9570077	2L_9570077_DEL [dm3] 2L_9570077_DEL [dm6]	ATTAATAGTTGA...	A	6.442e^-5	0.913	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17920187	2R_17920187_SNP [dm3] 2R_22032682_SNP [dm6]	G	T	6.607e^-5	0.913	INTRON CG34370
3R	7365940	3R_7365940_SNP [dm3] 3R_11540218_SNP [dm6]	C	T	6.629e^-5	0.913	INTRON dpr4
3L	7894419	3L_7894419_SNP [dm3] 3L_7901319_SNP [dm6]	T	C	6.684e^-5	0.913	SYNONYMOUS_CODING pbl INTRON pbl
3L	15760867	3L_15760867_SNP [dm3] 3L_15767767_SNP [dm6]	G	T	6.744e^-5	0.913	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12035536	3R_12035536_SNP [dm3] 3R_16209814_SNP [dm6]	C	T	6.825e^-5	0.913	UPSTREAM CR45639 & 1 other DOWNSTREAM CR45640 EXON CR45637
X	12940336	X_12940336_SNP [dm3] X_13046303_SNP [dm6]	C	T	6.845e^-5	0.913	INTRON rad
3R	10270903	3R_10270903_SNP [dm3] 3R_14445181_SNP [dm6]	C	T	6.935e^-5	0.913	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2656765	3L_2656765_SNP [dm3] 3L_2656765_SNP [dm6]	G	A	6.941e^-5	0.913	UTR_3_PRIME Fife
3L	1317457	3L_1317457_SNP [dm3] 3L_1317457_SNP [dm6]	G	A	6.956e^-5	0.913	SYNONYMOUS_CODING CG9153	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3261291	2R_3261291_SNP [dm3] 2R_7373786_SNP [dm6]	A	T	6.962e^-5	0.913	INTRON Dscam1	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6994029	3L_6994029_SNP [dm3] 3L_7000929_SNP [dm6]	G	A	6.977e^-5	0.913	INTRON Mp
2R	20909759	2R_20909759_SNP [dm3] 2R_25022236_SNP [dm6]	C	G	6.991e^-5	0.913	INTRON uzip
3L	722675	3L_722675_SNP [dm3] 3L_722675_SNP [dm6]	C	T	7.086e^-5	0.913	INTERGENIC
3L	11586769	3L_11586769_SNP [dm3] 3L_11593669_SNP [dm6]	G	T	7.127e^-5	0.913	UPSTREAM CR45442 & 1 other EXON CR45671 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	16294542	3R_16294542_SNP [dm3] 3R_20468820_SNP [dm6]	G	A	7.132e^-5	0.913	INTRON Gfrl
2L	3756305	2L_3756305_SNP [dm3] 2L_3756305_SNP [dm6]	A	T	7.245e^-5	0.913	UPSTREAM CG43707 INTERGENIC
3L	722612	3L_722612_SNP [dm3] 3L_722612_SNP [dm6]	C	T	7.330e^-5	0.913	INTERGENIC
3L	3090995	3L_3090995_SNP [dm3] 3L_3090995_SNP [dm6]	C	T	7.417e^-5	0.913	UTR_3_PRIME Cht7 DOWNSTREAM CG11486 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	18063875	2R_18063875_SNP [dm3] 2R_22176370_SNP [dm6]	G	A	7.446e^-5	0.913	SYNONYMOUS_CODING CG6758 EXON CR45151	TF binding site mE1_TFBS_chinmo
3R	18478659	3R_18478659_SNP [dm3] 3R_22652937_SNP [dm6]	C	T	7.494e^-5	0.913	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5243810	X_5243810_SNP [dm3] X_5349777_SNP [dm6]	T	C	7.592e^-5	0.913	INTRON SK
X	3247070	X_3247070_SNP [dm3] X_3353037_SNP [dm6]	T	C	7.596e^-5	0.913	INTERGENIC	regulatory region REDfly_CRMs
2R	15941043	2R_15941043_SNP [dm3] 2R_20053538_SNP [dm6]	T	G	7.679e^-5	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3L	5130756	3L_5130756_SNP [dm3] 3L_5137656_SNP [dm6]	G	T	7.704e^-5	0.913	SYNONYMOUS_CODING CG4611 DOWNSTREAM Prpk	TF binding site mE1_TFBS_chinmo
3R	9605775	3R_9605775_SNP [dm3] 3R_13780053_SNP [dm6]	G	A	7.880e^-5	0.913	SYNONYMOUS_CODING CG9288 UTR_3_PRIME CG42375 UPSTREAM CG9286 DOWNSTREAM CG9297	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5523493	3L_5523493_SNP [dm3] 3L_5530393_SNP [dm6]	C	T	7.895e^-5	0.913	INTERGENIC
3R	12035607	3R_12035607_DEL [dm3] 3R_16209885_DEL [dm6]	ATC	A	7.900e^-5	0.913	UPSTREAM CR45639 & 1 other DOWNSTREAM CR45640 & 1 other INTERGENIC
3R	22512841	3R_22512841_SNP [dm3] 3R_26687119_SNP [dm6]	T	A	7.905e^-5	0.913	INTERGENIC
3R	4268919	3R_4268919_SNP [dm3] 3R_8443197_SNP [dm6]	A	G	7.927e^-5	0.913	INTRON CG45263	TF binding site mE1_TFBS_cad
3R	15245511	3R_15245511_SNP [dm3] 3R_19419789_SNP [dm6]	T	A	8.051e^-5	0.913	INTRON CG31221
3R	23519319	3R_23519319_SNP [dm3] 3R_27693597_SNP [dm6]	G	A	8.088e^-5	0.913	UPSTREAM CG43319 DOWNSTREAM CG12880 INTERGENIC
X	16808748	X_16808748_SNP [dm3] X_16914715_SNP [dm6]	C	T	8.105e^-5	0.913	INTRON CG4928
2L	22020382	2L_22020382_SNP [dm3] 2L_22020382_SNP [dm6]	G	T	8.122e^-5	0.913	DOWNSTREAM CR33987 INTRON tio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	19357158	3R_19357158_SNP [dm3] 3R_23531436_SNP [dm6]	T	C	8.306e^-5	0.913	UPSTREAM CG10175 INTERGENIC
2L	18476619	2L_18476619_SNP [dm3] 2L_18476619_SNP [dm6]	T	C	8.369e^-5	0.913	INTRON CG10283	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	8896256	X_8896256_SNP [dm3] X_9002223_SNP [dm6]	C	A	8.394e^-5	0.913	INTRON rdgA & 1 other
X	16580964	X_16580964_SNP [dm3] X_16686931_SNP [dm6]	C	A	8.488e^-5	0.913	INTRON Sep4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	11635239	3R_11635239_SNP [dm3] 3R_15809517_SNP [dm6]	G	T	8.495e^-5	0.913	INTRON alpha-Man-IIb
3R	15025453	3R_15025453_SNP [dm3] 3R_19199731_SNP [dm6]	G	A	8.498e^-5	0.913	INTRON CG31475
3R	25106476	3R_25106476_SNP [dm3] 3R_29280754_SNP [dm6]	T	G	8.627e^-5	0.913	INTERGENIC	regulatory region REDfly_CRMs
2L	20404418	2L_20404418_SNP [dm3] 2L_20404418_SNP [dm6]	G	A	8.694e^-5	0.913	INTRON CG10947
3R	8477135	3R_8477135_SNP [dm3] 3R_12651413_SNP [dm6]	A	G	8.712e^-5	0.913	SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_sens
3R	13896683	3R_13896683_SNP [dm3] 3R_18070961_SNP [dm6]	T	C	8.754e^-5	0.913	INTERGENIC
X	14340876	X_14340876_SNP [dm3] X_14446843_SNP [dm6]	C	T	8.796e^-5	0.913	INTRON dpr8
X	1625757	X_1625757_SNP [dm3] X_1731724_SNP [dm6]	A	C	8.857e^-5	0.913	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21962090	2L_21962090_SNP [dm3] 2L_21962090_SNP [dm6]	A	G	8.861e^-5	0.913	INTERGENIC
3R	19625641	3R_19625641_SNP [dm3] 3R_23799919_SNP [dm6]	G	A	9.051e^-5	0.913	SYNONYMOUS_CODING mbc
3R	22512866	3R_22512866_SNP [dm3] 3R_26687144_SNP [dm6]	C	G	9.132e^-5	0.913	INTERGENIC
3R	18478649	3R_18478649_SNP [dm3] 3R_22652927_SNP [dm6]	T	C	9.133e^-5	0.913	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9569454	2L_9569454_SNP [dm3] 2L_9569454_SNP [dm6]	G	C	9.149e^-5	0.913	UPSTREAM CR44149 & 1 other INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	17961352	3L_17961352_SNP [dm3] 3L_17968252_SNP [dm6]	A	G	9.175e^-5	0.913	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	15084737	2L_15084737_SNP [dm3] 2L_15084737_SNP [dm6]	G	C	9.322e^-5	0.913	INTRON CG15270
2L	3670247	2L_3670247_SNP [dm3] 2L_3670247_SNP [dm6]	G	A	9.376e^-5	0.913	SYNONYMOUS_CODING Sfp24Bc UPSTREAM Sfp24Bb INTRON CG34340
2R	18245411	2R_18245411_SNP [dm3] 2R_22357906_SNP [dm6]	C	A	9.573e^-5	0.913	INTRON Liprin-gamma	transposable element FlyBase
3R	23441360	3R_23441360_SNP [dm3] 3R_27615638_SNP [dm6]	T	G	9.651e^-5	0.913	INTRON Tusp
3R	16387040	3R_16387040_SNP [dm3] 3R_20561318_SNP [dm6]	A	T	9.667e^-5	0.913	START_GAINED CG5191 UTR_5_PRIME CG5191 INTRON CG5191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18478985	3R_18478985_SNP [dm3] 3R_22653263_SNP [dm6]	G	T	9.732e^-5	0.913	INTRON CG45058	TF binding site mE1_TFBS_chinmo
2R	16952489	2R_16952489_INS [dm3] 2R_21064984_INS [dm6]	A	AAA	9.831e^-5	0.913	UTR_5_PRIME Cht12 DOWNSTREAM Cht4
2L	15074780	2L_15074780_DEL [dm3] 2L_15074780_DEL [dm6]	TCT	T	9.832e^-5	0.913	UTR_5_PRIME CG15270 DOWNSTREAM vas
3R	11615042	3R_11615042_SNP [dm3] 3R_15789320_SNP [dm6]	G	A	1.001e^-4	0.913	SYNONYMOUS_CODING CG9589 DOWNSTREAM CG9590 & 1 other
2L	19767601	2L_19767601_SNP [dm3] 2L_19767601_SNP [dm6]	C	T	1.004e^-4	0.913	INTRON bsh	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12035599	3R_12035599_SNP [dm3] 3R_16209877_SNP [dm6]	T	A	1.014e^-4	0.913	UPSTREAM CR45639 & 1 other DOWNSTREAM CR45640 & 1 other INTERGENIC
3R	11859175	3R_11859175_SNP [dm3] 3R_16033453_SNP [dm6]	A	T	1.022e^-4	0.913	INTRON pnr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	20958000	3R_20958000_SNP [dm3] 3R_25132278_SNP [dm6]	T	G	1.031e^-4	0.913	INTRON Bili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12021863	X_12021863_SNP [dm3] X_12127830_SNP [dm6]	G	A	1.036e^-4	0.913	UPSTREAM Ten-a INTRON Ten-a
3L	5979581	3L_5979581_SNP [dm3] 3L_5986481_SNP [dm6]	C	A	1.042e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	7480667	3L_7480667_SNP [dm3] 3L_7487567_SNP [dm6]	A	G	1.046e^-4	0.913	SYNONYMOUS_CODING mthl6
2L	9570400	2L_9570400_SNP [dm3] 2L_9570400_SNP [dm6]	A	G	1.047e^-4	0.913	UTR_5_PRIME CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15025409	3R_15025409_SNP [dm3] 3R_19199687_SNP [dm6]	A	G	1.058e^-4	0.913	INTRON CG31475
2R	16739449	2R_16739449_SNP [dm3] 2R_20851944_SNP [dm6]	G	A	1.058e^-4	0.913	SYNONYMOUS_CODING CG9993
3L	18350528	3L_18350528_SNP [dm3] 3L_18357428_SNP [dm6]	C	A	1.066e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8547748	3L_8547748_SNP [dm3] 3L_8554648_SNP [dm6]	G	T	1.080e^-4	0.913	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12923423	2L_12923423_SNP [dm3] 2L_12923423_SNP [dm6]	T	G	1.082e^-4	0.913	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
3R	18229976	3R_18229976_SNP [dm3] 3R_22404254_SNP [dm6]	C	A	1.087e^-4	0.913	INTRON CG13856
X	8133270	X_8133270_INS [dm3] X_8239237_INS [dm6]	G	GTAGATG	1.092e^-4	0.913	UTR_3_PRIME sdt
X	12021505	X_12021505_SNP [dm3] X_12127472_SNP [dm6]	T	A	1.103e^-4	0.913	UPSTREAM Ten-a INTRON Ten-a
3L	1416965	3L_1416965_SNP [dm3] 3L_1416965_SNP [dm6]	C	T	1.108e^-4	0.913	SYNONYMOUS_CODING FucTD INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	12035630	3R_12035630_SNP [dm3] 3R_16209908_SNP [dm6]	A	T	1.110e^-4	0.913	UPSTREAM CR45639 & 1 other DOWNSTREAM CR45640 & 1 other INTERGENIC
X	20356036	X_20356036_SNP [dm3] X_20485009_SNP [dm6]	A	C	1.122e^-4	0.913	INTRON RhoGAP19D
X	13673567	X_13673567_SNP [dm3] X_13779534_SNP [dm6]	C	A	1.124e^-4	0.913	DOWNSTREAM CtsB1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17576547	2L_17576547_SNP [dm3] 2L_17576547_SNP [dm6]	C	T	1.128e^-4	0.913	INTERGENIC
3L	10826517	3L_10826517_SNP [dm3] 3L_10833417_SNP [dm6]	A	C	1.136e^-4	0.913	INTERGENIC
2L	3670289	2L_3670289_SNP [dm3] 2L_3670289_SNP [dm6]	G	A	1.148e^-4	0.913	SYNONYMOUS_CODING Sfp24Bc UPSTREAM Sfp24Bb INTRON CG34340
2L	5473046	2L_5473046_SNP [dm3] 2L_5473046_SNP [dm6]	A	C	1.148e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19564911	2R_19564911_SNP [dm3] 2R_23677388_SNP [dm6]	T	A	1.154e^-4	0.913	INTRON Pde8	TF binding site mE1_TFBS_cad
3R	17236543	3R_17236543_SNP [dm3] 3R_21410821_SNP [dm6]	G	A	1.160e^-4	0.913	DOWNSTREAM CheB93b INTRON lbl	TF binding site mE1_TFBS_cad
3L	7636877	3L_7636877_INS [dm3] 3L_7643777_INS [dm6]	T	TCCCATT	1.162e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	14366556	2R_14366556_SNP [dm3] 2R_18479051_SNP [dm6]	G	C	1.164e^-4	0.913	INTRON CG30116
2R	13415363	2R_13415363_SNP [dm3] 2R_17527858_SNP [dm6]	G	C	1.167e^-4	0.913	SYNONYMOUS_CODING Patronin	TF binding site mE1_TFBS_HSA
X	7593057	X_7593057_DEL [dm3] X_7699024_DEL [dm6]	ACATATGTACATGTA...	A	1.178e^-4	0.913	INTRON CHES-1-like
3R	25912874	3R_25912874_SNP [dm3] 3R_30087152_SNP [dm6]	C	A	1.180e^-4	0.913	INTRON sima
3L	2655053	3L_2655053_SNP [dm3] 3L_2655053_SNP [dm6]	G	C	1.183e^-4	0.913	NON_SYNONYMOUS_CODING CG42304 UTR_3_PRIME Snup DOWNSTREAM Fife
3R	13942515	3R_13942515_SNP [dm3] 3R_18116793_SNP [dm6]	T	C	1.185e^-4	0.913	INTRON sr
2R	3699682	2R_3699682_SNP [dm3] 2R_7812177_SNP [dm6]	A	G	1.200e^-4	0.913	UPSTREAM CG1882 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	9127479	2R_9127479_SNP [dm3] 2R_13239974_SNP [dm6]	T	G	1.202e^-4	0.913	UPSTREAM CG4679 INTRON GstE14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12154719	2L_12154719_SNP [dm3] 2L_12154719_SNP [dm6]	T	A	1.228e^-4	0.913	INTRON CG31760
2R	21019534	2R_21019534_SNP [dm3] 2R_25132011_SNP [dm6]	A	T	1.228e^-4	0.913	INTRON lov	TF binding site mE1_TFBS_Kr
X	14043245	X_14043245_SNP [dm3] X_14149212_SNP [dm6]	A	C	1.235e^-4	0.913	INTERGENIC
X	10196034	X_10196034_SNP [dm3] X_10302001_SNP [dm6]	A	G	1.242e^-4	0.913	INTRON alpha-Man-I
2L	17576850	2L_17576850_SNP [dm3] 2L_17576850_SNP [dm6]	G	A	1.276e^-4	0.913	INTERGENIC
3R	13984752	3R_13984752_SNP [dm3] 3R_18159030_SNP [dm6]	G	T	1.277e^-4	0.913	SYNONYMOUS_CODING CG14315 DOWNSTREAM CR45103 EXON CR45104
3L	5538047	3L_5538047_SNP [dm3] 3L_5544947_SNP [dm6]	G	A	1.293e^-4	0.913	UTR_3_PRIME CG10625 INTRON CG10625
2R	8360568	2R_8360568_SNP [dm3] 2R_12473063_SNP [dm6]	A	G	1.300e^-4	0.913	SYNONYMOUS_CODING CG8550
3R	22658182	3R_22658182_SNP [dm3] 3R_26832460_SNP [dm6]	G	A	1.304e^-4	0.913	INTRON Tl
X	12146987	X_12146987_SNP [dm3] X_12252954_SNP [dm6]	C	T	1.304e^-4	0.913	INTRON Ten-a
3R	12035623	3R_12035623_SNP [dm3] 3R_16209901_SNP [dm6]	G	A	1.307e^-4	0.913	UPSTREAM CR45639 & 1 other DOWNSTREAM CR45640 & 1 other INTERGENIC
2R	12154847	2R_12154847_SNP [dm3] 2R_16267342_SNP [dm6]	C	T	1.310e^-4	0.913	SYNONYMOUS_CODING Khc DOWNSTREAM csul
X	22054922	X_22054922_SNP [dm3] X_22653086_SNP [dm6]	A	G	1.315e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9282473	2L_9282473_SNP [dm3] 2L_9282473_SNP [dm6]	T	G	1.330e^-4	0.913	INTRON Ggamma30A
3R	12134059	3R_12134059_SNP [dm3] 3R_16308337_SNP [dm6]	T	G	1.339e^-4	0.913	NON_SYNONYMOUS_CODING Zip89B	TF binding site mE1_TFBS_sens
3L	11673593	3L_11673593_SNP [dm3] 3L_11680493_SNP [dm6]	T	C	1.347e^-4	0.913	UPSTREAM CG32085 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	723474	3L_723474_SNP [dm3] 3L_723474_SNP [dm6]	T	A	1.350e^-4	0.913	INTERGENIC
X	21081307	X_21081307_SNP [dm3] X_21210280_SNP [dm6]	A	G	1.351e^-4	0.913	INTRON CG32521
2R	20889987	2R_20889987_INS [dm3] 2R_25002464_INS [dm6]	C	CAGTGTTAGTCTTACTTAAC...	1.370e^-4	0.913	INTRON zip
3L	15755130	3L_15755130_SNP [dm3] 3L_15762030_SNP [dm6]	G	A	1.383e^-4	0.913	INTERGENIC
2L	3721186	2L_3721186_SNP [dm3] 2L_3721186_SNP [dm6]	T	A	1.397e^-4	0.913	UPSTREAM Shaw INTRON Shaw
3R	12035817	3R_12035817_SNP [dm3] 3R_16210095_SNP [dm6]	T	A	1.400e^-4	0.913	UPSTREAM CR45638 DOWNSTREAM CR45637 INTERGENIC
X	20198576	X_20198576_SNP [dm3] X_20327549_SNP [dm6]	G	A	1.419e^-4	0.913	UTR_5_PRIME CG1631 INTRON CG1504
2R	20572519	2R_20572519_SNP [dm3] 2R_24684996_SNP [dm6]	C	G	1.419e^-4	0.913	START_GAINED Mmp1 UTR_5_PRIME Mmp1 INTRON Mmp1
X	16855642	X_16855642_SNP [dm3] X_16961609_SNP [dm6]	C	A	1.419e^-4	0.913	SYNONYMOUS_CODING CG9086	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10667162	2R_10667162_SNP [dm3] 2R_14779657_SNP [dm6]	G	A	1.421e^-4	0.913	INTRON kn	TF binding site BDTNP1_TFBS_z
3L	22140036	3L_22140036_SNP [dm3] 3L_22146936_SNP [dm6]	G	A	1.446e^-4	0.913	INTRON olf413
3R	19625883	3R_19625883_SNP [dm3] 3R_23800161_SNP [dm6]	G	T	1.448e^-4	0.913	SYNONYMOUS_CODING mbc
2L	3261061	2L_3261061_SNP [dm3] 2L_3261061_SNP [dm6]	A	T	1.457e^-4	0.913	DOWNSTREAM CR45338 EXON CR45337
X	19360749	X_19360749_DEL [dm3] X_19466716_DEL [dm6]	TT	A	1.468e^-4	0.913	INTRON kek5
X	16304342	X_16304342_SNP [dm3] X_16410309_SNP [dm6]	C	A	1.473e^-4	0.913	INTRON CG4301
2L	2927239	2L_2927239_SNP [dm3] 2L_2927239_SNP [dm6]	T	A	1.483e^-4	0.913	INTRON lilli
3L	722516	3L_722516_SNP [dm3] 3L_722516_SNP [dm6]	C	T	1.483e^-4	0.913	INTERGENIC
3L	3289962	3L_3289962_SNP [dm3] 3L_3289962_SNP [dm6]	C	A	1.492e^-4	0.913	UTR_3_PRIME CG12017 INTRON CG12017
3L	21761049	3L_21761049_SNP [dm3] 3L_21767949_SNP [dm6]	T	C	1.499e^-4	0.913	INTRON Syn1 & 1 other
2L	7151221	2L_7151221_SNP [dm3] 2L_7151221_SNP [dm6]	G	C	1.501e^-4	0.913	INTRON Pvf3
3R	19625475	3R_19625475_SNP [dm3] 3R_23799753_SNP [dm6]	T	C	1.505e^-4	0.913	INTRON mbc
3L	6735678	3L_6735678_DEL [dm3] 3L_6742578_DEL [dm6]	TT	T	1.507e^-4	0.913	INTRON dikar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	19286479	2L_19286479_SNP [dm3] 2L_19286479_SNP [dm6]	A	G	1.508e^-4	0.913	INTERGENIC
3L	10842704	3L_10842704_SNP [dm3] 3L_10849604_SNP [dm6]	G	T	1.510e^-4	0.913	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	12035632	3R_12035632_SNP [dm3] 3R_16209910_SNP [dm6]	G	A	1.513e^-4	0.913	UPSTREAM CR45639 & 1 other DOWNSTREAM CR45640 & 1 other INTERGENIC
2R	3261315	2R_3261315_SNP [dm3] 2R_7373810_SNP [dm6]	A	G	1.514e^-4	0.913	INTRON Dscam1	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5130681	3L_5130681_SNP [dm3] 3L_5137581_SNP [dm6]	G	A	1.526e^-4	0.913	SYNONYMOUS_CODING CG4611	TF binding site mE1_TFBS_chinmo
3R	8353659	3R_8353659_SNP [dm3] 3R_12527937_SNP [dm6]	C	A	1.537e^-4	0.913	NON_SYNONYMOUS_CODING Hug INTRON Octbeta3R
3R	5899901	3R_5899901_SNP [dm3] 3R_10074179_SNP [dm6]	A	C	1.542e^-4	0.913	SYNONYMOUS_CODING CG5361 DOWNSTREAM nerfin-2
2L	12997190	2L_12997190_SNP [dm3] 2L_12997190_SNP [dm6]	G	T	1.549e^-4	0.913	INTRON CG12404
3L	8802526	3L_8802526_SNP [dm3] 3L_8809426_SNP [dm6]	A	G	1.556e^-4	0.913	UPSTREAM CG13309 DOWNSTREAM CG13308 INTERGENIC
2R	16566870	2R_16566870_SNP [dm3] 2R_20679365_SNP [dm6]	G	T	1.557e^-4	0.913	INTERGENIC
2L	21929390	2L_21929390_SNP [dm3] 2L_21929390_SNP [dm6]	G	C	1.562e^-4	0.913	UPSTREAM CR45334 INTERGENIC
3L	11924542	3L_11924542_SNP [dm3] 3L_11931442_SNP [dm6]	C	T	1.569e^-4	0.913	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19625266	3R_19625266_SNP [dm3] 3R_23799544_SNP [dm6]	T	C	1.569e^-4	0.913	INTRON mbc
3R	7365388	3R_7365388_SNP [dm3] 3R_11539666_SNP [dm6]	A	G	1.569e^-4	0.913	INTRON dpr4
3R	25656227	3R_25656227_SNP [dm3] 3R_29830505_SNP [dm6]	A	G	1.570e^-4	0.913	INTRON Atg16
3R	7349481	3R_7349481_SNP [dm3] 3R_11523759_SNP [dm6]	C	G	1.572e^-4	0.913	INTERGENIC
X	3937202	X_3937202_SNP [dm3] X_4043169_SNP [dm6]	G	A	1.576e^-4	0.913	INTERGENIC
3L	4338536	3L_4338536_SNP [dm3] 3L_4338536_SNP [dm6]	C	A	1.580e^-4	0.913	INTRON Cip4	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	9603832	3R_9603832_SNP [dm3] 3R_13778110_SNP [dm6]	C	T	1.589e^-4	0.913	SYNONYMOUS_CODING CG9297	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	11859039	3R_11859039_SNP [dm3] 3R_16033317_SNP [dm6]	C	T	1.597e^-4	0.913	INTRON pnr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	13711694	2R_13711694_SNP [dm3] 2R_17824189_SNP [dm6]	A	C	1.602e^-4	0.913	INTRON grh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi transposable element FlyBase
2L	5754964	2L_5754964_SNP [dm3] 2L_5754964_SNP [dm6]	T	C	1.610e^-4	0.913	INTRON CG11030
3R	11859554	3R_11859554_SNP [dm3] 3R_16033832_SNP [dm6]	C	T	1.614e^-4	0.913	UPSTREAM pnr INTRON pnr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18532591	3R_18532591_SNP [dm3] 3R_22706869_SNP [dm6]	G	A	1.614e^-4	0.913	SYNONYMOUS_CODING CG13842 DOWNSTREAM CG4907
2L	17582486	2L_17582486_DEL [dm3] 2L_17582486_DEL [dm6]	ATGGCAT	G	1.618e^-4	0.913	INTERGENIC
2R	20910312	2R_20910312_SNP [dm3] 2R_25022789_SNP [dm6]	C	A	1.619e^-4	0.913	INTRON uzip	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6994538	3L_6994538_DEL [dm3] 3L_7001438_DEL [dm6]	AA	A	1.620e^-4	0.913	INTRON Mp
2L	3548588	2L_3548588_SNP [dm3] 2L_3548588_SNP [dm6]	T	A	1.621e^-4	0.913	DOWNSTREAM drm INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2R	20909679	2R_20909679_SNP [dm3] 2R_25022156_SNP [dm6]	A	T	1.636e^-4	0.913	INTRON uzip
3L	5536791	3L_5536791_SNP [dm3] 3L_5543691_SNP [dm6]	T	C	1.639e^-4	0.913	SYNONYMOUS_CODING CG10625 INTRON CG10625
3R	12879772	3R_12879772_SNP [dm3] 3R_17054050_SNP [dm6]	T	A	1.652e^-4	0.913	UTR_5_PRIME Dad UPSTREAM Dad	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	18328716	2L_18328716_SNP [dm3] 2L_18328716_SNP [dm6]	T	C	1.658e^-4	0.913	INTRON Fas3
3R	4818813	3R_4818813_SNP [dm3] 3R_8993091_SNP [dm6]	C	T	1.659e^-4	0.913	UPSTREAM CG11975 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	18259871	3R_18259871_SNP [dm3] 3R_22434149_SNP [dm6]	A	G	1.666e^-4	0.913	INTRON CG13847	TF binding site BDTNP1_TFBS_twi
3L	15760226	3L_15760226_SNP [dm3] 3L_15767126_SNP [dm6]	G	A	1.672e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19453306	2R_19453306_SNP [dm3] 2R_23565783_SNP [dm6]	A	G	1.675e^-4	0.913	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8360529	2R_8360529_SNP [dm3] 2R_12473024_SNP [dm6]	T	G	1.678e^-4	0.913	SYNONYMOUS_CODING CG8550
3L	6735399	3L_6735399_SNP [dm3] 3L_6742299_SNP [dm6]	G	T	1.681e^-4	0.913	INTRON dikar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	16855733	X_16855733_SNP [dm3] X_16961700_SNP [dm6]	G	T	1.685e^-4	0.913	INTRON CG9086	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	16295344	3R_16295344_SNP [dm3] 3R_20469622_SNP [dm6]	A	G	1.689e^-4	0.913	INTRON Gfrl
3R	12035673	3R_12035673_SNP [dm3] 3R_16209951_SNP [dm6]	C	A	1.702e^-4	0.913	UPSTREAM CR45638 DOWNSTREAM CR45640 & 1 other INTERGENIC
X	5750202	X_5750202_SNP [dm3] X_5856169_SNP [dm6]	T	C	1.705e^-4	0.913	INTERGENIC
3R	16295341	3R_16295341_SNP [dm3] 3R_20469619_SNP [dm6]	C	A	1.710e^-4	0.913	INTRON Gfrl
2L	21859012	2L_21859012_SNP [dm3] 2L_21859012_SNP [dm6]	T	C	1.713e^-4	0.913	INTRON CR44917	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	17938459	3R_17938459_SNP [dm3] 3R_22112737_SNP [dm6]	A	T	1.731e^-4	0.913	UPSTREAM Ir94a INTERGENIC
3L	17586662	3L_17586662_INS [dm3] 3L_17593562_INS [dm6]	T	TTTT	1.733e^-4	0.913	INTRON Eip74EF
2R	13799222	2R_13799222_SNP [dm3] 2R_17911717_SNP [dm6]	G	T	1.735e^-4	0.913	INTRON Elk
2R	4165696	2R_4165696_SNP [dm3] 2R_8278191_SNP [dm6]	T	C	1.736e^-4	0.913	DOWNSTREAM CR44280 INTERGENIC
3R	12872450	3R_12872450_SNP [dm3] 3R_17046728_SNP [dm6]	C	T	1.751e^-4	0.913	SYNONYMOUS_CODING Patr-1
3R	25871529	3R_25871529_SNP [dm3] 3R_30045807_SNP [dm6]	T	C	1.753e^-4	0.913	UPSTREAM CG7943 DOWNSTREAM Sry-delta INTRON RpL32	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3L	11708448	3L_11708448_SNP [dm3] 3L_11715348_SNP [dm6]	T	G	1.760e^-4	0.913	UPSTREAM CG14132 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	13108475	3L_13108475_SNP [dm3] 3L_13115375_SNP [dm6]	C	T	1.760e^-4	0.913	SYNONYMOUS_CODING trn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens
3L	11703471	3L_11703471_SNP [dm3] 3L_11710371_SNP [dm6]	C	T	1.760e^-4	0.913	SYNONYMOUS_CODING mtTFB1 UTR_3_PRIME Ccdc56 DOWNSTREAM crim	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18014566	2R_18014566_SNP [dm3] 2R_22127061_SNP [dm6]	C	A	1.765e^-4	0.913	SYNONYMOUS_CODING GM130 UPSTREAM NtR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12134608	3R_12134608_SNP [dm3] 3R_16308886_SNP [dm6]	C	T	1.769e^-4	0.913	DOWNSTREAM Zip89B INTERGENIC
X	8555869	X_8555869_SNP [dm3] X_8661836_SNP [dm6]	T	C	1.770e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	10935241	3L_10935241_SNP [dm3] 3L_10942141_SNP [dm6]	C	A	1.793e^-4	0.913	INTERGENIC
3L	11487906	3L_11487906_SNP [dm3] 3L_11494806_SNP [dm6]	A	C	1.795e^-4	0.913	INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2R	17673673	2R_17673673_INS [dm3] 2R_21786168_INS [dm6]	A	AATGTGA	1.799e^-4	0.913	INTERGENIC
2L	15550754	2L_15550754_SNP [dm3] 2L_15550754_SNP [dm6]	C	T	1.805e^-4	0.913	DOWNSTREAM CR45728 INTRON CG15256
3L	2657251	3L_2657251_SNP [dm3] 3L_2657251_SNP [dm6]	C	T	1.809e^-4	0.913	UTR_3_PRIME Fife	TF binding site BDTNP1_TFBS_da
2L	4648924	2L_4648924_SNP [dm3] 2L_4648924_SNP [dm6]	A	T	1.810e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12035667	3R_12035667_INS [dm3] 3R_16209945_INS [dm6]	A	AAAGTGCACA	1.812e^-4	0.913	UPSTREAM CR45638 DOWNSTREAM CR45640 & 1 other INTERGENIC
3R	17236302	3R_17236302_SNP [dm3] 3R_21410580_SNP [dm6]	A	G	1.815e^-4	0.913	NON_SYNONYMOUS_CODING lbl DOWNSTREAM CheB93b	TF binding site mE1_TFBS_cad
3R	15894383	3R_15894383_INS [dm3] 3R_20068661_INS [dm6]	A	AAGA	1.817e^-4	0.913	INTERGENIC
X	8113188	X_8113188_SNP [dm3] X_8219155_SNP [dm6]	C	T	1.827e^-4	0.913	INTRON sdt	TF binding site BDTNP1_TFBS_dl
3R	4819377	3R_4819377_SNP [dm3] 3R_8993655_SNP [dm6]	C	T	1.827e^-4	0.913	UPSTREAM E_var_3-9 INTRON CG11975	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11869362	3L_11869362_SNP [dm3] 3L_11876262_SNP [dm6]	G	A	1.827e^-4	0.913	INTRON CG44837
2L	17578887	2L_17578887_SNP [dm3] 2L_17578887_SNP [dm6]	T	A	1.830e^-4	0.913	UPSTREAM CR45698 INTERGENIC
3R	23517119	3R_23517119_SNP [dm3] 3R_27691397_SNP [dm6]	G	A	1.837e^-4	0.913	INTRON CG12880	TF binding site mE1_TFBS_chinmo
3L	15760221	3L_15760221_SNP [dm3] 3L_15767121_SNP [dm6]	G	C	1.875e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	13215096	3R_13215096_SNP [dm3] 3R_17389374_SNP [dm6]	C	T	1.876e^-4	0.913	UTR_3_PRIME lute INTRON Brf
X	3559838	X_3559838_SNP [dm3] X_3665805_SNP [dm6]	A	T	1.878e^-4	0.913	UTR_3_PRIME AstA-R1
3R	12082718	3R_12082718_SNP [dm3] 3R_16256996_SNP [dm6]	C	T	1.884e^-4	0.913	SYNONYMOUS_CODING tara	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12026018	X_12026018_SNP [dm3] X_12131985_SNP [dm6]	G	A	1.898e^-4	0.913	INTRON Ten-a
2R	12155542	2R_12155542_SNP [dm3] 2R_16268037_SNP [dm6]	A	G	1.898e^-4	0.913	SYNONYMOUS_CODING Khc	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15558015	2R_15558015_SNP [dm3] 2R_19670510_SNP [dm6]	C	T	1.899e^-4	0.913	UPSTREAM isopeptidase-T-3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_run mE1_TFBS_Ubx
X	19283330	X_19283330_SNP [dm3] X_19389297_SNP [dm6]	T	G	1.900e^-4	0.913	INTRON kek5
3R	19372409	3R_19372409_SNP [dm3] 3R_23546687_SNP [dm6]	A	G	1.912e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	16899149	3R_16899149_SNP [dm3] 3R_21073427_SNP [dm6]	C	T	1.914e^-4	0.913	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad
3R	17738161	3R_17738161_SNP [dm3] 3R_21912439_SNP [dm6]	C	T	1.938e^-4	0.913	SYNONYMOUS_CODING CG6690	TF binding site mE1_TFBS_HSA
3L	13994556	3L_13994556_SNP [dm3] 3L_14001456_SNP [dm6]	A	T	1.946e^-4	0.913	UPSTREAM upSET INTRON CG8783	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
3L	9225504	3L_9225504_SNP [dm3] 3L_9232404_SNP [dm6]	A	G	1.951e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_inv
2L	9811181	2L_9811181_SNP [dm3] 2L_9811181_SNP [dm6]	A	G	1.959e^-4	0.913	INTRON nAChRalpha6
3L	9092136	3L_9092136_SNP [dm3] 3L_9099036_SNP [dm6]	A	G	1.966e^-4	0.913	UTR_3_PRIME bol
2L	17997092	2L_17997092_SNP [dm3] 2L_17997092_SNP [dm6]	T	C	1.967e^-4	0.913	INTERGENIC
2L	8143273	2L_8143273_SNP [dm3] 2L_8143273_SNP [dm6]	G	T	1.968e^-4	0.913	DOWNSTREAM CG42762 INTRON CG8552	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3R	11857068	3R_11857068_SNP [dm3] 3R_16031346_SNP [dm6]	T	G	1.976e^-4	0.913	INTRON pnr
3L	11227152	3L_11227152_SNP [dm3] 3L_11234052_SNP [dm6]	A	G	1.983e^-4	0.913	SYNONYMOUS_CODING Ir68a
3L	6735834	3L_6735834_SNP [dm3] 3L_6742734_SNP [dm6]	G	C	2.007e^-4	0.913	UTR_5_PRIME dikar INTRON dikar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	13175133	3R_13175133_SNP [dm3] 3R_17349411_SNP [dm6]	A	C	2.020e^-4	0.913	INTRON beat-IIa
2L	9155352	2L_9155352_SNP [dm3] 2L_9155352_SNP [dm6]	G	T	2.027e^-4	0.913	INTRON CG32982
2L	10153827	2L_10153827_SNP [dm3] 2L_10153827_SNP [dm6]	C	G	2.032e^-4	0.913	INTRON CG44153 & 1 other
3R	12035209	3R_12035209_SNP [dm3] 3R_16209487_SNP [dm6]	G	A	2.041e^-4	0.913	UPSTREAM CR45639 & 1 other DOWNSTREAM CR45640 EXON CR45637
3L	2651764	3L_2651764_SNP [dm3] 3L_2651764_SNP [dm6]	G	T	2.042e^-4	0.913	UTR_5_PRIME Aats-pro UPSTREAM Snup & 1 other
2L	5575814	2L_5575814_SNP [dm3] 2L_5575814_SNP [dm6]	G	A	2.046e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_inv
3R	15703974	3R_15703974_SNP [dm3] 3R_19878252_SNP [dm6]	A	C	2.049e^-4	0.913	UPSTREAM CG17186 INTRON Arc42	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12246331	2L_12246331_SNP [dm3] 2L_12246331_SNP [dm6]	A	G	2.055e^-4	0.913	INTRON aret
3R	5225503	3R_5225503_SNP [dm3] 3R_9399781_SNP [dm6]	C	A	2.061e^-4	0.913	SYNONYMOUS_CODING CG34117 DOWNSTREAM RpL34b & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	20710097	2L_20710097_SNP [dm3] 2L_20710097_SNP [dm6]	G	T	2.064e^-4	0.913	INTRON Hr38 EXON CR44187
2L	19850740	2L_19850740_SNP [dm3] 2L_19850740_SNP [dm6]	T	C	2.065e^-4	0.913	INTRON sick
3R	1938392	3R_1938392_SNP [dm3] 3R_6112670_SNP [dm6]	A	G	2.074e^-4	0.913	UPSTREAM Obp83g INTERGENIC	regulatory region REDfly_CRMs
3R	7357636	3R_7357636_SNP [dm3] 3R_11531914_SNP [dm6]	T	C	2.079e^-4	0.913	INTERGENIC
2L	9570185	2L_9570185_SNP [dm3] 2L_9570185_SNP [dm6]	A	C	2.080e^-4	0.913	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2380682	X_2380682_SNP [dm3] X_2486649_SNP [dm6]	G	T	2.085e^-4	0.913	INTRON trol
2L	21970323	2L_21970323_SNP [dm3] 2L_21970323_SNP [dm6]	C	T	2.105e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	16423431	2R_16423431_SNP [dm3] 2R_20535926_SNP [dm6]	T	C	2.112e^-4	0.913	UPSTREAM CG13423 DOWNSTREAM CG18067 INTERGENIC
3L	2167565	3L_2167565_SNP [dm3] 3L_2167565_SNP [dm6]	G	C	2.112e^-4	0.913	UTR_3_PRIME CG15879
2R	9267075	2R_9267075_SNP [dm3] 2R_13379570_SNP [dm6]	G	A	2.114e^-4	0.913	INTERGENIC
3R	17492772	3R_17492772_SNP [dm3] 3R_21667050_SNP [dm6]	T	C	2.116e^-4	0.913	DOWNSTREAM CG15497 INTRON DNApol-alpha180	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7813113	2L_7813113_SNP [dm3] 2L_7813113_SNP [dm6]	A	G	2.125e^-4	0.913	INTRON LanB1	TF binding site BDTNP1_TFBS_twi
2R	5418787	2R_5418787_SNP [dm3] 2R_9531282_SNP [dm6]	T	A	2.125e^-4	0.913	INTRON brp
2R	4165711	2R_4165711_SNP [dm3] 2R_8278206_SNP [dm6]	T	G	2.130e^-4	0.913	DOWNSTREAM CR44280 INTERGENIC
2R	17060713	2R_17060713_SNP [dm3] 2R_21173208_SNP [dm6]	C	T	2.131e^-4	0.913	INTRON Xpd	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	18978380	X_18978380_SNP [dm3] X_19084347_SNP [dm6]	C	G	2.132e^-4	0.913	DOWNSTREAM CR45503 INTERGENIC
3R	14702068	3R_14702068_SNP [dm3] 3R_18876346_SNP [dm6]	A	G	2.143e^-4	0.913	INTRON CG14298
3L	18193560	3L_18193560_SNP [dm3] 3L_18200460_SNP [dm6]	C	T	2.146e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	18193570	3L_18193570_SNP [dm3] 3L_18200470_SNP [dm6]	T	C	2.146e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	4273457	3R_4273457_SNP [dm3] 3R_8447735_SNP [dm6]	G	T	2.150e^-4	0.913	INTRON CG45263
3L	722651	3L_722651_SNP [dm3] 3L_722651_SNP [dm6]	C	T	2.153e^-4	0.913	INTERGENIC
3R	25912875	3R_25912875_SNP [dm3] 3R_30087153_SNP [dm6]	T	C	2.153e^-4	0.913	INTRON sima
3L	11708453	3L_11708453_SNP [dm3] 3L_11715353_SNP [dm6]	C	A	2.161e^-4	0.913	UPSTREAM CG14132 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	4268207	3R_4268207_SNP [dm3] 3R_8442485_SNP [dm6]	A	G	2.163e^-4	0.913	INTRON CG45263
3L	7279132	3L_7279132_SNP [dm3] 3L_7286032_SNP [dm6]	A	G	2.182e^-4	0.913	INTRON unc-13-4A
3R	13657290	3R_13657290_INS [dm3] 3R_17831568_INS [dm6]	A	ATGTA	2.182e^-4	0.913	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	16723588	3L_16723588_SNP [dm3] 3L_16730488_SNP [dm6]	A	C	2.185e^-4	0.913	NON_SYNONYMOUS_CODING Dbp73D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2651851	3L_2651851_SNP [dm3] 3L_2651851_SNP [dm6]	G	A	2.192e^-4	0.913	UPSTREAM Snup & 2 others INTERGENIC
3L	3354928	3L_3354928_SNP [dm3] 3L_3354928_SNP [dm6]	G	T	2.194e^-4	0.913	INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	13138620	3R_13138620_SNP [dm3] 3R_17312898_SNP [dm6]	G	A	2.194e^-4	0.913	INTERGENIC
3R	8349902	3R_8349902_SNP [dm3] 3R_12524180_SNP [dm6]	A	T	2.201e^-4	0.913	INTRON Octbeta3R
2L	17576549	2L_17576549_SNP [dm3] 2L_17576549_SNP [dm6]	A	G	2.204e^-4	0.913	INTERGENIC
2R	16389413	2R_16389413_SNP [dm3] 2R_20501908_SNP [dm6]	T	A	2.207e^-4	0.913	INTERGENIC	regulatory region REDfly_CRMs
3L	14799443	3L_14799443_SNP [dm3] 3L_14806343_SNP [dm6]	G	A	2.210e^-4	0.913	INTRON CG17839
X	10895007	X_10895007_SNP [dm3] X_11000974_SNP [dm6]	A	G	2.215e^-4	0.913	INTRON CG42339
2R	19663466	2R_19663466_SNP [dm3] 2R_23775943_SNP [dm6]	G	A	2.221e^-4	0.913	INTRON CG9850
3R	4266799	3R_4266799_SNP [dm3] 3R_8441077_SNP [dm6]	G	T	2.230e^-4	0.913	INTRON CG45263
3R	4267500	3R_4267500_SNP [dm3] 3R_8441778_SNP [dm6]	C	T	2.238e^-4	0.913	INTRON CG45263
3L	11487899	3L_11487899_SNP [dm3] 3L_11494799_SNP [dm6]	T	A	2.269e^-4	0.913	INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11487909	3L_11487909_SNP [dm3] 3L_11494809_SNP [dm6]	T	C	2.269e^-4	0.913	INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8524135	3L_8524135_SNP [dm3] 3L_8531035_SNP [dm6]	G	A	2.282e^-4	0.913	SYNONYMOUS_CODING foi	TF binding site mE1_TFBS_cad
3R	25136442	3R_25136442_SNP [dm3] 3R_29310720_SNP [dm6]	A	G	2.283e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	15083918	2L_15083918_SNP [dm3] 2L_15083918_SNP [dm6]	A	T	2.283e^-4	0.913	INTRON CG15270
3L	3354892	3L_3354892_SNP [dm3] 3L_3354892_SNP [dm6]	G	C	2.289e^-4	0.913	INTRON kst	TF binding site mE1_TFBS_cad
2L	9272771	2L_9272771_SNP [dm3] 2L_9272771_SNP [dm6]	G	T	2.290e^-4	0.913	INTRON Ggamma30A	TF binding site mE1_TFBS_Trl
3R	26133840	3R_26133840_DEL [dm3] 3R_30308118_DEL [dm6]	AA	G	2.292e^-4	0.913	INTRON hdc
2L	3417516	2L_3417516_SNP [dm3] 2L_3417516_SNP [dm6]	A	G	2.302e^-4	0.913	UTR_3_PRIME CG31952 INTRON pgant2
3R	7366940	3R_7366940_SNP [dm3] 3R_11541218_SNP [dm6]	C	T	2.315e^-4	0.913	INTRON dpr4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5979576	3L_5979576_INS [dm3] 3L_5986476_INS [dm6]	C	CG	2.317e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	7357941	3R_7357941_SNP [dm3] 3R_11532219_SNP [dm6]	G	A	2.326e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11918432	3L_11918432_SNP [dm3] 3L_11925332_SNP [dm6]	C	G	2.327e^-4	0.913	UPSTREAM CG5718 INTRON CG44837	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	3699675	2R_3699675_SNP [dm3] 2R_7812170_SNP [dm6]	C	G	2.344e^-4	0.913	UPSTREAM CG1882 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	5560492	2L_5560492_SNP [dm3] 2L_5560492_SNP [dm6]	C	T	2.356e^-4	0.913	SYNONYMOUS_CODING GluRIIB
2L	6257373	2L_6257373_SNP [dm3] 2L_6257373_SNP [dm6]	C	T	2.358e^-4	0.913	DOWNSTREAM CG9486 INTRON Ddr
3R	22512745	3R_22512745_SNP [dm3] 3R_26687023_SNP [dm6]	C	T	2.362e^-4	0.913	INTERGENIC
3R	12146351	3R_12146351_SNP [dm3] 3R_16320629_SNP [dm6]	T	A	2.372e^-4	0.913	UPSTREAM tRNA:F2:89BC INTRON Sulf1
2L	12160930	2L_12160930_SNP [dm3] 2L_12160930_SNP [dm6]	G	A	2.383e^-4	0.913	UPSTREAM CG31861 INTRON CG31760
2L	1333795	2L_1333795_SNP [dm3] 2L_1333795_SNP [dm6]	A	T	2.383e^-4	0.913	UPSTREAM CG5440 INTERGENIC
3R	8587669	3R_8587669_SNP [dm3] 3R_12761947_SNP [dm6]	G	C	2.384e^-4	0.913	INTRON beat-Vc
2R	10015252	2R_10015252_SNP [dm3] 2R_14127747_SNP [dm6]	A	T	2.384e^-4	0.913	INTRON Prosap
3L	20945746	3L_20945746_SNP [dm3] 3L_20952646_SNP [dm6]	G	A	2.390e^-4	0.913	INTERGENIC
3R	11635493	3R_11635493_SNP [dm3] 3R_15809771_SNP [dm6]	G	T	2.392e^-4	0.913	UPSTREAM alpha-Man-IIb INTRON alpha-Man-IIb
3L	11652954	3L_11652954_DEL [dm3] 3L_11659854_DEL [dm6]	GTCTTGAAGG	G	2.410e^-4	0.913	INTRON CG32085
3R	25871557	3R_25871557_SNP [dm3] 3R_30045835_SNP [dm6]	A	T	2.415e^-4	0.913	UPSTREAM CG7943 DOWNSTREAM Sry-delta INTRON RpL32	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3R	25871560	3R_25871560_SNP [dm3] 3R_30045838_SNP [dm6]	T	A	2.415e^-4	0.913	UPSTREAM CG7943 DOWNSTREAM Sry-delta INTRON RpL32	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3L	1247387	3L_1247387_SNP [dm3] 3L_1247387_SNP [dm6]	C	T	2.419e^-4	0.913	SYNONYMOUS_CODING Psf1 UPSTREAM Sac1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	963883	2L_963883_SNP [dm3] 2L_963883_SNP [dm6]	T	C	2.420e^-4	0.913	INTERGENIC
2L	6255977	2L_6255977_SNP [dm3] 2L_6255977_SNP [dm6]	C	T	2.424e^-4	0.913	SYNONYMOUS_CODING CG9486 INTRON Ddr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14987850	3R_14987850_SNP [dm3] 3R_19162128_SNP [dm6]	T	C	2.432e^-4	0.913	SYNONYMOUS_CODING CG42358 UTR_5_PRIME CG42359	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	17583093	2L_17583093_SNP [dm3] 2L_17583093_SNP [dm6]	G	A	2.435e^-4	0.913	UPSTREAM CR45111 INTERGENIC
2L	22030843	2L_22030843_SNP [dm3] 2L_22030843_SNP [dm6]	A	G	2.439e^-4	0.913	INTERGENIC
2L	7069443	2L_7069443_SNP [dm3] 2L_7069443_SNP [dm6]	C	T	2.441e^-4	0.913	SYNONYMOUS_CODING CG11289 DOWNSTREAM Pvf2
3R	11635440	3R_11635440_SNP [dm3] 3R_15809718_SNP [dm6]	C	T	2.442e^-4	0.913	UPSTREAM alpha-Man-IIb INTRON alpha-Man-IIb
2R	6916127	2R_6916127_INS [dm3] 2R_11028622_INS [dm6]	T	TTCCAGCTTGCTAGCTC...	2.442e^-4	0.913	INTRON luna
2L	2427416	2L_2427416_SNP [dm3] 2L_2427416_SNP [dm6]	G	A	2.448e^-4	0.913	UPSTREAM dpp EXON CR44912
3L	12522276	3L_12522276_SNP [dm3] 3L_12529176_SNP [dm6]	G	T	2.449e^-4	0.913	SYNONYMOUS_CODING nst	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	9902281	3R_9902281_SNP [dm3] 3R_14076559_SNP [dm6]	T	G	2.461e^-4	0.913	INTRON foxo
2R	7065817	2R_7065817_SNP [dm3] 2R_11178312_SNP [dm6]	T	C	2.465e^-4	0.913	INTRON shn	TF binding site mE1_TFBS_inv
2R	20912303	2R_20912303_SNP [dm3] 2R_25024780_SNP [dm6]	T	C	2.475e^-4	0.913	INTRON uzip
3R	6269965	3R_6269965_SNP [dm3] 3R_10444243_SNP [dm6]	T	C	2.475e^-4	0.913	INTERGENIC
3L	13549586	3L_13549586_SNP [dm3] 3L_13556486_SNP [dm6]	C	A	2.476e^-4	0.913	INTRON bru-3
3L	19190980	3L_19190980_SNP [dm3] 3L_19197880_SNP [dm6]	C	T	2.484e^-4	0.913	INTRON fz2
2L	3721187	2L_3721187_SNP [dm3] 2L_3721187_SNP [dm6]	A	G	2.484e^-4	0.913	UPSTREAM Shaw INTRON Shaw
2L	16085702	2L_16085702_SNP [dm3] 2L_16085702_SNP [dm6]	C	T	2.490e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_inv
2L	18652304	2L_18652304_SNP [dm3] 2L_18652304_SNP [dm6]	A	G	2.497e^-4	0.913	SYNONYMOUS_CODING Cyp310a1 INTRON MESR3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8347433	2L_8347433_SNP [dm3] 2L_8347433_SNP [dm6]	A	G	2.505e^-4	0.913	INTRON CG7778
X	10204159	X_10204159_SNP [dm3] X_10310126_SNP [dm6]	C	A	2.516e^-4	0.913	INTRON alpha-Man-I
3L	12874148	3L_12874148_SNP [dm3] 3L_12881048_SNP [dm6]	A	T	2.520e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13362356	3R_13362356_SNP [dm3] 3R_17536634_SNP [dm6]	C	A	2.521e^-4	0.913	SYNONYMOUS_CODING P5cr-2 DOWNSTREAM l_3_07882
2L	16204378	2L_16204378_SNP [dm3] 2L_16204378_SNP [dm6]	T	G	2.530e^-4	0.913	DOWNSTREAM CR44736 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	2735393	2L_2735393_SNP [dm3] 2L_2735393_SNP [dm6]	C	A	2.542e^-4	0.913	UPSTREAM CG31689 INTRON CG31689
2R	6929168	2R_6929168_SNP [dm3] 2R_11041663_SNP [dm6]	T	G	2.552e^-4	0.913	INTRON luna
X	4741097	X_4741097_DEL [dm3] X_4847064_DEL [dm6]	AA	A	2.559e^-4	0.913	INTRON CG42594
3R	4595388	3R_4595388_SNP [dm3] 3R_8769666_SNP [dm6]	G	A	2.563e^-4	0.913	SYNONYMOUS_CODING CG8236
2R	10640435	2R_10640435_SNP [dm3] 2R_14752930_SNP [dm6]	C	T	2.577e^-4	0.913	UPSTREAM Rpn6 DOWNSTREAM CG10151 INTRON ave	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	22030796	2L_22030796_SNP [dm3] 2L_22030796_SNP [dm6]	T	G	2.580e^-4	0.913	INTERGENIC
2L	17427521	2L_17427521_SNP [dm3] 2L_17427521_SNP [dm6]	C	T	2.589e^-4	0.913	INTRON Dif
3L	723254	3L_723254_SNP [dm3] 3L_723254_SNP [dm6]	G	T	2.590e^-4	0.913	INTERGENIC
2L	21095999	2L_21095999_DEL [dm3] 2L_21095999_DEL [dm6]	ACA	A	2.610e^-4	0.913	UPSTREAM CG34136 INTRON CG12050
3L	11434514	3L_11434514_DEL [dm3] 3L_11441414_DEL [dm6]	CATACATTAGTGAAGAA...	G	2.615e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	5949813	3R_5949813_SNP [dm3] 3R_10124091_SNP [dm6]	A	C	2.618e^-4	0.913	INTRON knk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20908883	2R_20908883_SNP [dm3] 2R_25021360_SNP [dm6]	C	T	2.632e^-4	0.913	INTRON uzip
2L	19311874	2L_19311874_SNP [dm3] 2L_19311874_SNP [dm6]	G	A	2.636e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	13098655	3R_13098655_SNP [dm3] 3R_17272933_SNP [dm6]	T	C	2.638e^-4	0.913	INTERGENIC
2L	13723661	2L_13723661_SNP [dm3] 2L_13723661_SNP [dm6]	G	A	2.645e^-4	0.913	UPSTREAM CG9014 INTERGENIC
3L	10880311	3L_10880311_SNP [dm3] 3L_10887211_SNP [dm6]	G	T	2.646e^-4	0.913	UPSTREAM CG6404 INTERGENIC
2L	18664351	2L_18664351_SNP [dm3] 2L_18664351_SNP [dm6]	A	C	2.646e^-4	0.913	UPSTREAM CR42490 INTERGENIC
2R	19564919	2R_19564919_SNP [dm3] 2R_23677396_SNP [dm6]	C	G	2.651e^-4	0.913	INTRON Pde8	TF binding site mE1_TFBS_cad
3L	15871767	3L_15871767_SNP [dm3] 3L_15878667_SNP [dm6]	G	T	2.652e^-4	0.913	INTRON pHCl
3R	19625264	3R_19625264_SNP [dm3] 3R_23799542_SNP [dm6]	T	C	2.656e^-4	0.913	INTRON mbc
2R	11467386	2R_11467386_SNP [dm3] 2R_15579881_SNP [dm6]	G	A	2.667e^-4	0.913	INTERGENIC
3R	18532211	3R_18532211_SNP [dm3] 3R_22706489_SNP [dm6]	A	G	2.671e^-4	0.913	SYNONYMOUS_CODING CG13842
X	10873554	X_10873554_SNP [dm3] X_10979521_SNP [dm6]	A	G	2.676e^-4	0.913	INTRON CG42339
2R	16738713	2R_16738713_SNP [dm3] 2R_20851208_SNP [dm6]	G	T	2.677e^-4	0.913	SPLICE_SITE_REGION CG9993 SYNONYMOUS_CODING CG9993	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	2650069	3L_2650069_SNP [dm3] 3L_2650069_SNP [dm6]	C	T	2.687e^-4	0.913	SYNONYMOUS_CODING CG1246 DOWNSTREAM Aats-pro	TF binding site mE1_TFBS_HSA
3R	11857631	3R_11857631_SNP [dm3] 3R_16031909_SNP [dm6]	A	C	2.697e^-4	0.913	INTRON pnr
X	12021512	X_12021512_SNP [dm3] X_12127479_SNP [dm6]	A	T	2.701e^-4	0.913	UPSTREAM Ten-a INTRON Ten-a
3R	22738756	3R_22738756_SNP [dm3] 3R_26913034_SNP [dm6]	T	A	2.707e^-4	0.913	UPSTREAM Ets97D INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	7078944	3R_7078944_SNP [dm3] 3R_11253222_SNP [dm6]	T	C	2.710e^-4	0.913	INTRON CR43283 EXON CR43283	TF binding site mE1_TFBS_kn
3L	5536761	3L_5536761_SNP [dm3] 3L_5543661_SNP [dm6]	A	G	2.719e^-4	0.913	SYNONYMOUS_CODING CG10625 INTRON CG10625
2R	5848377	2R_5848377_SNP [dm3] 2R_9960872_SNP [dm6]	C	A	2.724e^-4	0.913	SYNONYMOUS_CODING Pal1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14225112	3R_14225112_SNP [dm3] 3R_18399390_SNP [dm6]	A	T	2.726e^-4	0.913	UPSTREAM CG44009 & 1 other DOWNSTREAM CG12333 INTRON CG44009	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_Trl
X	5615886	X_5615886_SNP [dm3] X_5721853_SNP [dm6]	A	T	2.729e^-4	0.913	INTRON CG32758
3R	24553440	3R_24553440_SNP [dm3] 3R_28727718_SNP [dm6]	G	A	2.736e^-4	0.913	INTRON htt	TF binding site mE1_TFBS_chinmo
3R	11302676	3R_11302676_SNP [dm3] 3R_15476954_SNP [dm6]	C	T	2.738e^-4	0.913	UPSTREAM AdamTS-A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19198601	X_19198601_SNP [dm3] X_19304568_SNP [dm6]	G	C	2.741e^-4	0.913	INTRON CG8051
3R	7354439	3R_7354439_SNP [dm3] 3R_11528717_SNP [dm6]	A	T	2.747e^-4	0.913	INTERGENIC
3R	9318046	3R_9318046_SNP [dm3] 3R_13492324_SNP [dm6]	G	A	2.749e^-4	0.913	INTERGENIC
2L	9145545	2L_9145545_DEL [dm3] 2L_9145545_DEL [dm6]	TT	C	2.761e^-4	0.913	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7057382	2L_7057382_SNP [dm3] 2L_7057382_SNP [dm6]	A	G	2.763e^-4	0.913	UTR_5_PRIME Mnn1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2L	17996509	2L_17996509_SNP [dm3] 2L_17996509_SNP [dm6]	A	T	2.765e^-4	0.913	INTERGENIC
3L	8546733	3L_8546733_SNP [dm3] 3L_8553633_SNP [dm6]	G	A	2.766e^-4	0.913	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19024800	2R_19024800_SNP [dm3] 2R_23137277_SNP [dm6]	G	A	2.766e^-4	0.913	INTERGENIC
2R	17782554	2R_17782554_MNP [dm3] 2R_21895049_MNP [dm6]	GTT	TGA	2.772e^-4	0.913	INTRON Fili
3L	13026935	3L_13026935_SNP [dm3] 3L_13033835_SNP [dm6]	C	T	2.777e^-4	0.913	UPSTREAM CR45157 INTRON CG17672	TF binding site BDTNP1_TFBS_dl
2R	9459342	2R_9459342_SNP [dm3] 2R_13571837_SNP [dm6]	A	G	2.777e^-4	0.913	SYNONYMOUS_CODING CG42807	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14009788	2L_14009788_SNP [dm3] 2L_14009788_SNP [dm6]	A	T	2.777e^-4	0.913	DOWNSTREAM CG42692 & 1 other INTERGENIC
3L	12159298	3L_12159298_SNP [dm3] 3L_12166198_SNP [dm6]	T	C	2.782e^-4	0.913	SYNONYMOUS_CODING Rh7	TF binding site mE1_TFBS_cad
2R	12971375	2R_12971375_SNP [dm3] 2R_17083870_SNP [dm6]	A	G	2.783e^-4	0.913	INTRON CG30460	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13071632	2R_13071632_DEL [dm3] 2R_17184127_DEL [dm6]	GGGCTCG	G	2.790e^-4	0.913	UPSTREAM CR44387 INTERGENIC
3R	19464515	3R_19464515_SNP [dm3] 3R_23638793_SNP [dm6]	C	T	2.792e^-4	0.913	INTRON CG31145
3L	11034764	3L_11034764_SNP [dm3] 3L_11041664_SNP [dm6]	A	C	2.795e^-4	0.913	INTRON CG43693	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3L	11584053	3L_11584053_SNP [dm3] 3L_11590953_SNP [dm6]	T	C	2.798e^-4	0.913	SYNONYMOUS_CODING CG33268 DOWNSTREAM CG7377
3L	8589983	3L_8589983_SNP [dm3] 3L_8596883_SNP [dm6]	A	G	2.806e^-4	0.913	SYNONYMOUS_CODING CG43078 DOWNSTREAM CG43078	TF binding site mE1_TFBS_chinmo
3R	20298672	3R_20298672_SNP [dm3] 3R_24472950_SNP [dm6]	A	C	2.807e^-4	0.913	INTERGENIC
3L	13549850	3L_13549850_SNP [dm3] 3L_13556750_SNP [dm6]	A	G	2.814e^-4	0.913	INTRON bru-3
3R	26256332	3R_26256332_SNP [dm3] 3R_30430610_SNP [dm6]	A	G	2.823e^-4	0.913	NON_SYNONYMOUS_CODING CG15533	TF binding site mE1_TFBS_cad
X	16855408	X_16855408_SNP [dm3] X_16961375_SNP [dm6]	G	A	2.827e^-4	0.913	SYNONYMOUS_CODING CG9086	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1931658	2L_1931658_SNP [dm3] 2L_1931658_SNP [dm6]	G	C	2.829e^-4	0.913	INTRON CG7337
3L	3354934	3L_3354934_SNP [dm3] 3L_3354934_SNP [dm6]	C	T	2.832e^-4	0.913	INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	2254928	X_2254928_DEL [dm3] X_2360895_DEL [dm6]	TT	T	2.835e^-4	0.913	INTRON ptr
3R	14691645	3R_14691645_SNP [dm3] 3R_18865923_SNP [dm6]	G	T	2.840e^-4	0.913	INTERGENIC
2R	11467342	2R_11467342_SNP [dm3] 2R_15579837_SNP [dm6]	T	A	2.840e^-4	0.913	INTERGENIC
3R	12146557	3R_12146557_SNP [dm3] 3R_16320835_SNP [dm6]	T	A	2.843e^-4	0.913	UPSTREAM tRNA:F2:89BC & 1 other INTRON Sulf1
3R	25978687	3R_25978687_SNP [dm3] 3R_30152965_SNP [dm6]	C	T	2.845e^-4	0.913	SYNONYMOUS_CODING CG15529 DOWNSTREAM CG11498	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6253307	3R_6253307_SNP [dm3] 3R_10427585_SNP [dm6]	G	T	2.848e^-4	0.913	INTERGENIC
2R	13193483	2R_13193483_SNP [dm3] 2R_17305978_SNP [dm6]	T	C	2.848e^-4	0.913	DOWNSTREAM CR43661 INTRON mbl
3L	7612795	3L_7612795_SNP [dm3] 3L_7619695_SNP [dm6]	A	T	2.866e^-4	0.913	INTRON CG33275
3L	2650413	3L_2650413_SNP [dm3] 3L_2650413_SNP [dm6]	A	G	2.869e^-4	0.913	SYNONYMOUS_CODING Aats-pro UTR_3_PRIME Aats-pro DOWNSTREAM CG1246
X	4710434	X_4710434_SNP [dm3] X_4816401_SNP [dm6]	G	A	2.881e^-4	0.913	INTERGENIC
2R	20761533	2R_20761533_SNP [dm3] 2R_24874010_SNP [dm6]	T	C	2.882e^-4	0.913	SYNONYMOUS_CODING CG16896 DOWNSTREAM CG30423	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_sens
2L	17418395	2L_17418395_SNP [dm3] 2L_17418395_SNP [dm6]	C	A	2.885e^-4	0.913	INTRON Dif	TF binding site mE1_TFBS_cad
2R	13798330	2R_13798330_SNP [dm3] 2R_17910825_SNP [dm6]	C	T	2.888e^-4	0.913	INTRON Elk
3L	7612797	3L_7612797_DEL [dm3] 3L_7619697_DEL [dm6]	TTGGCAA	T	2.890e^-4	0.913	INTRON CG33275
3R	13185875	3R_13185875_SNP [dm3] 3R_17360153_SNP [dm6]	G	A	2.897e^-4	0.913	INTRON beat-IIa
2R	11467404	2R_11467404_SNP [dm3] 2R_15579899_SNP [dm6]	C	G	2.897e^-4	0.913	INTERGENIC
2R	7400423	2R_7400423_SNP [dm3] 2R_11512918_SNP [dm6]	T	A	2.902e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2654959	3L_2654959_SNP [dm3] 3L_2654959_SNP [dm6]	T	C	2.902e^-4	0.913	SYNONYMOUS_CODING CG42304 UTR_3_PRIME Snup DOWNSTREAM Fife
3L	2655211	3L_2655211_SNP [dm3] 3L_2655211_SNP [dm6]	G	A	2.902e^-4	0.913	UTR_3_PRIME Snup & 1 other DOWNSTREAM Fife
3R	15815309	3R_15815309_DEL [dm3] 3R_19989587_DEL [dm6]	TT	T	2.903e^-4	0.913	INTRON Hs6st
3R	11634168	3R_11634168_SNP [dm3] 3R_15808446_SNP [dm6]	T	C	2.907e^-4	0.913	INTRON alpha-Man-IIb
2R	17067537	2R_17067537_SNP [dm3] 2R_21180032_SNP [dm6]	T	C	2.912e^-4	0.913	SYNONYMOUS_CODING Pu	TF binding site mE1_TFBS_chinmo
2R	14343186	2R_14343186_SNP [dm3] 2R_18455681_SNP [dm6]	A	T	2.915e^-4	0.913	DOWNSTREAM CG30116 INTERGENIC
2R	19237531	2R_19237531_SNP [dm3] 2R_23350008_SNP [dm6]	G	A	2.925e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13193408	2R_13193408_SNP [dm3] 2R_17305903_SNP [dm6]	T	C	2.925e^-4	0.913	DOWNSTREAM CR43661 INTRON mbl
3L	7612805	3L_7612805_SNP [dm3] 3L_7619705_SNP [dm6]	A	T	2.927e^-4	0.913	INTRON CG33275
3L	7612808	3L_7612808_SNP [dm3] 3L_7619708_SNP [dm6]	T	A	2.927e^-4	0.913	INTRON CG33275
3L	7612809	3L_7612809_SNP [dm3] 3L_7619709_SNP [dm6]	T	G	2.927e^-4	0.913	INTRON CG33275
3R	8122545	3R_8122545_SNP [dm3] 3R_12296823_SNP [dm6]	C	A	2.929e^-4	0.913	DOWNSTREAM svp INTRON svp
2R	5418674	2R_5418674_MNP [dm3] 2R_9531169_MNP [dm6]	ACA	GTG	2.931e^-4	0.913	INTRON brp
X	18645717	X_18645717_SNP [dm3] X_18751684_SNP [dm6]	G	T	2.933e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12021503	X_12021503_SNP [dm3] X_12127470_SNP [dm6]	T	A	2.944e^-4	0.913	UPSTREAM Ten-a INTRON Ten-a
X	19934832	X_19934832_SNP [dm3] X_20040799_SNP [dm6]	C	T	2.944e^-4	0.913	INTRON Dop2R
3L	13610339	3L_13610339_DEL [dm3] 3L_13617239_DEL [dm6]	TGCCT	T	2.946e^-4	0.913	INTRON bru-3
3L	6737119	3L_6737119_SNP [dm3] 3L_6744019_SNP [dm6]	A	C	2.959e^-4	0.913	UPSTREAM dikar DOWNSTREAM velo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_ttk
2L	11074055	2L_11074055_SNP [dm3] 2L_11074055_SNP [dm6]	T	C	2.960e^-4	0.913	DOWNSTREAM CR45725 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	13704857	2L_13704857_SNP [dm3] 2L_13704857_SNP [dm6]	A	G	2.962e^-4	0.913	INTRON CG31814	TF binding site BDTNP1_TFBS_twi
3L	4082663	3L_4082663_SNP [dm3] 3L_4082663_SNP [dm6]	T	C	2.975e^-4	0.913	INTRON Gad1
3L	7636739	3L_7636739_SNP [dm3] 3L_7643639_SNP [dm6]	T	A	2.983e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	9560057	3L_9560057_SNP [dm3] 3L_9566957_SNP [dm6]	G	A	2.984e^-4	0.913	INTRON CG42673
2L	18858630	2L_18858630_DEL [dm3] 2L_18858630_DEL [dm6]	AATCGGCGACCAT...	A	2.997e^-4	0.913	UPSTREAM CG10602 DOWNSTREAM tup INTRON CG10602 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
2R	17919914	2R_17919914_SNP [dm3] 2R_22032409_SNP [dm6]	T	C	3.000e^-4	0.913	INTRON CG34370
2R	18000896	2R_18000896_SNP [dm3] 2R_22113391_SNP [dm6]	T	C	3.004e^-4	0.913	UPSTREAM CG30280 & 1 other INTRON Vrp1
3R	9605844	3R_9605844_SNP [dm3] 3R_13780122_SNP [dm6]	C	T	3.005e^-4	0.913	SYNONYMOUS_CODING CG9288 UTR_3_PRIME CG42375 UPSTREAM CG9286 DOWNSTREAM CG9297	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4378226	3L_4378226_SNP [dm3] 3L_4378226_SNP [dm6]	C	T	3.009e^-4	0.913	UPSTREAM CR44360 INTRON DopEcR
2L	12261116	2L_12261116_DEL [dm3] 2L_12261116_DEL [dm6]	TTG	A	3.009e^-4	0.913	INTRON aret	insulator Insulator_Class_II.mE01
2R	17827767	2R_17827767_SNP [dm3] 2R_21940262_SNP [dm6]	T	A	3.012e^-4	0.913	INTRON Fili
3R	11635429	3R_11635429_SNP [dm3] 3R_15809707_SNP [dm6]	T	G	3.019e^-4	0.913	UPSTREAM alpha-Man-IIb INTRON alpha-Man-IIb
3L	16987701	3L_16987701_SNP [dm3] 3L_16994601_SNP [dm6]	C	G	3.025e^-4	0.913	DOWNSTREAM CG3764 & 1 other INTERGENIC
2L	17984164	2L_17984164_SNP [dm3] 2L_17984164_SNP [dm6]	C	A	3.033e^-4	0.913	INTERGENIC
3L	3354893	3L_3354893_SNP [dm3] 3L_3354893_SNP [dm6]	C	G	3.035e^-4	0.913	INTRON kst	TF binding site mE1_TFBS_cad
3L	3354897	3L_3354897_DEL [dm3] 3L_3354897_DEL [dm6]	GTAC	G	3.035e^-4	0.913	INTRON kst	TF binding site mE1_TFBS_cad
3L	3354906	3L_3354906_SNP [dm3] 3L_3354906_SNP [dm6]	C	T	3.035e^-4	0.913	INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	3354908	3L_3354908_INS [dm3] 3L_3354908_INS [dm6]	C	CGGC	3.035e^-4	0.913	INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	16269215	2L_16269215_SNP [dm3] 2L_16269215_SNP [dm6]	C	T	3.038e^-4	0.913	INTRON crp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2R	8253518	2R_8253518_SNP [dm3] 2R_12366013_SNP [dm6]	A	C	3.043e^-4	0.913	EXON CR33013
2R	17396282	2R_17396282_SNP [dm3] 2R_21508777_SNP [dm6]	G	C	3.044e^-4	0.913	INTRON MESK2
2R	5090906	2R_5090906_SNP [dm3] 2R_9203401_SNP [dm6]	G	A	3.049e^-4	0.913	INTERGENIC
3R	15039449	3R_15039449_SNP [dm3] 3R_19213727_SNP [dm6]	A	G	3.052e^-4	0.913	NON_SYNONYMOUS_CODING cry
2R	16566875	2R_16566875_SNP [dm3] 2R_20679370_SNP [dm6]	T	A	3.061e^-4	0.913	INTERGENIC
2L	18890551	2L_18890551_SNP [dm3] 2L_18890551_SNP [dm6]	C	A	3.063e^-4	0.913	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	4481638	2R_4481638_SNP [dm3] 2R_8594133_SNP [dm6]	T	C	3.068e^-4	0.913	UTR_3_PRIME CG8736	TF binding site mE1_TFBS_chinmo
2R	14366555	2R_14366555_SNP [dm3] 2R_18479050_SNP [dm6]	A	G	3.072e^-4	0.913	INTRON CG30116
3R	20405345	3R_20405345_SNP [dm3] 3R_24579623_SNP [dm6]	C	A	3.092e^-4	0.913	INTRON CG13624	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11634910	3R_11634910_SNP [dm3] 3R_15809188_SNP [dm6]	T	C	3.099e^-4	0.913	INTRON alpha-Man-IIb
3L	2650183	3L_2650183_SNP [dm3] 3L_2650183_SNP [dm6]	G	C	3.102e^-4	0.913	UTR_3_PRIME CG1246 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2651521	3L_2651521_SNP [dm3] 3L_2651521_SNP [dm6]	A	C	3.102e^-4	0.913	NON_SYNONYMOUS_CODING Aats-pro UPSTREAM Snup & 1 other
3L	2652122	3L_2652122_SNP [dm3] 3L_2652122_SNP [dm6]	T	A	3.102e^-4	0.913	UTR_5_PRIME Snup & 1 other UPSTREAM Aats-pro	TF binding site mE1_TFBS_cad
3L	12423985	3L_12423985_DEL [dm3] 3L_12430885_DEL [dm6]	CTGTCCGCTGC...	C	3.102e^-4	0.913	INTRON toe
X	16792106	X_16792106_SNP [dm3] X_16898073_SNP [dm6]	C	T	3.105e^-4	0.913	UPSTREAM CG33252 INTERGENIC
3R	18873286	3R_18873286_SNP [dm3] 3R_23047564_SNP [dm6]	C	A	3.108e^-4	0.913	INTRON CG17121	TF binding site BDTNP1_TFBS_z
3L	4675363	3L_4675363_SNP [dm3] 3L_4675363_SNP [dm6]	G	A	3.108e^-4	0.913	INTRON axo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	4675371	3L_4675371_SNP [dm3] 3L_4675371_SNP [dm6]	A	G	3.108e^-4	0.913	INTRON axo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20702984	2L_20702984_SNP [dm3] 2L_20702984_SNP [dm6]	A	G	3.108e^-4	0.913	INTRON Hr38
2L	16546959	2L_16546959_SNP [dm3] 2L_16546959_SNP [dm6]	G	T	3.115e^-4	0.913	INTRON CG42389
2R	16751702	2R_16751702_SNP [dm3] 2R_20864197_SNP [dm6]	T	C	3.120e^-4	0.913	INTRON CG15227
3L	1706645	3L_1706645_SNP [dm3] 3L_1706645_SNP [dm6]	G	A	3.121e^-4	0.913	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11074058	2L_11074058_SNP [dm3] 2L_11074058_SNP [dm6]	C	T	3.123e^-4	0.913	DOWNSTREAM CR45725 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9569217	2L_9569217_SNP [dm3] 2L_9569217_SNP [dm6]	G	C	3.129e^-4	0.913	UPSTREAM CR44149 INTRON CG3838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1709859	3L_1709859_SNP [dm3] 3L_1709859_SNP [dm6]	G	A	3.132e^-4	0.913	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	11074057	2L_11074057_SNP [dm3] 2L_11074057_SNP [dm6]	T	A	3.138e^-4	0.913	DOWNSTREAM CR45725 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	17341232	3L_17341232_SNP [dm3] 3L_17348132_SNP [dm6]	C	G	3.144e^-4	0.913	INTRON Mip
2L	11442116	2L_11442116_SNP [dm3] 2L_11442116_SNP [dm6]	A	G	3.150e^-4	0.913	INTRON salm	TF binding site mE1_TFBS_inv
2L	2548680	2L_2548680_SNP [dm3] 2L_2548680_SNP [dm6]	G	C	3.154e^-4	0.913	INTERGENIC
2L	2548699	2L_2548699_SNP [dm3] 2L_2548699_SNP [dm6]	G	T	3.154e^-4	0.913	INTERGENIC
2L	19321929	2L_19321929_SNP [dm3] 2L_19321929_SNP [dm6]	C	T	3.157e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23441387	3R_23441387_SNP [dm3] 3R_27615665_SNP [dm6]	T	A	3.161e^-4	0.913	INTRON Tusp
2R	18456185	2R_18456185_DEL [dm3] 2R_22568680_DEL [dm6]	CTATTATTG	A	3.167e^-4	0.913	INTRON dnr1	TF binding site mE1_TFBS_Trl
3R	26042450	3R_26042450_SNP [dm3] 3R_30216728_SNP [dm6]	T	A	3.171e^-4	0.913	INTRON CecC
3R	8122589	3R_8122589_SNP [dm3] 3R_12296867_SNP [dm6]	G	A	3.175e^-4	0.913	DOWNSTREAM svp INTRON svp
2L	21938811	2L_21938811_SNP [dm3] 2L_21938811_SNP [dm6]	A	T	3.180e^-4	0.913	INTERGENIC
3R	5476907	3R_5476907_SNP [dm3] 3R_9651185_SNP [dm6]	T	G	3.182e^-4	0.913	UTR_3_PRIME CG9492 DOWNSTREAM Dh44
3R	26133843	3R_26133843_MNP [dm3] 3R_30308121_MNP [dm6]	AGCG	GTAT	3.189e^-4	0.913	INTRON hdc
3R	13469273	3R_13469273_SNP [dm3] 3R_17643551_SNP [dm6]	T	C	3.189e^-4	0.913	INTRON CG43175
2L	19289449	2L_19289449_SNP [dm3] 2L_19289449_SNP [dm6]	C	T	3.192e^-4	0.913	INTERGENIC
3R	11635404	3R_11635404_SNP [dm3] 3R_15809682_SNP [dm6]	G	C	3.199e^-4	0.913	UPSTREAM alpha-Man-IIb INTRON alpha-Man-IIb
3R	11635468	3R_11635468_SNP [dm3] 3R_15809746_SNP [dm6]	A	C	3.199e^-4	0.913	UPSTREAM alpha-Man-IIb INTRON alpha-Man-IIb
3R	11635507	3R_11635507_SNP [dm3] 3R_15809785_SNP [dm6]	T	C	3.199e^-4	0.913	UPSTREAM alpha-Man-IIb INTRON alpha-Man-IIb
3L	7636293	3L_7636293_SNP [dm3] 3L_7643193_SNP [dm6]	A	G	3.202e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	19003819	2L_19003819_SNP [dm3] 2L_19003819_SNP [dm6]	T	G	3.203e^-4	0.913	UTR_5_PRIME CG31793 INTRON CG31793	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	13106773	3R_13106773_SNP [dm3] 3R_17281051_SNP [dm6]	T	C	3.213e^-4	0.913	INTERGENIC
2R	8610605	2R_8610605_SNP [dm3] 2R_12723100_SNP [dm6]	C	T	3.220e^-4	0.913	INTRON CG42663
2R	19566449	2R_19566449_SNP [dm3] 2R_23678926_SNP [dm6]	C	T	3.223e^-4	0.913	UTR_3_PRIME Pde8	TF binding site mE1_TFBS_chinmo
3L	9275579	3L_9275579_SNP [dm3] 3L_9282479_SNP [dm6]	G	A	3.237e^-4	0.913	INTRON GluRIB
3R	15210712	3R_15210712_SNP [dm3] 3R_19384990_SNP [dm6]	T	C	3.239e^-4	0.913	SYNONYMOUS_CODING Ino80 UPSTREAM CR34285	TF binding site mE1_TFBS_Kr
2L	9880852	2L_9880852_SNP [dm3] 2L_9880852_SNP [dm6]	T	C	3.243e^-4	0.913	INTRON nAChRalpha6
3L	7893963	3L_7893963_SNP [dm3] 3L_7900863_SNP [dm6]	C	T	3.245e^-4	0.913	SYNONYMOUS_CODING pbl INTRON pbl
2R	13193416	2R_13193416_SNP [dm3] 2R_17305911_SNP [dm6]	A	T	3.246e^-4	0.913	DOWNSTREAM CR43661 INTRON mbl
3L	6701465	3L_6701465_SNP [dm3] 3L_6708365_SNP [dm6]	C	T	3.249e^-4	0.913	SYNONYMOUS_CODING CG8519 UTR_5_PRIME CG8519
2R	18562932	2R_18562932_SNP [dm3] 2R_22675427_SNP [dm6]	C	A	3.255e^-4	0.913	INTERGENIC	enhancer mE1_CBP_Enhancers
X	6747608	X_6747608_SNP [dm3] X_6853575_SNP [dm6]	T	C	3.257e^-4	0.913	UPSTREAM CG14434 INTRON CG14434	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	19314205	2L_19314205_SNP [dm3] 2L_19314205_SNP [dm6]	C	T	3.261e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_cad
2L	14857618	2L_14857618_SNP [dm3] 2L_14857618_SNP [dm6]	C	A	3.266e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	6737096	3L_6737096_SNP [dm3] 3L_6743996_SNP [dm6]	A	T	3.267e^-4	0.913	UPSTREAM dikar DOWNSTREAM velo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_ttk
2L	11011791	2L_11011791_SNP [dm3] 2L_11011791_SNP [dm6]	C	T	3.272e^-4	0.913	SYNONYMOUS_CODING dUTPase UPSTREAM Art8 DOWNSTREAM Nup154	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	13828092	2R_13828092_SNP [dm3] 2R_17940587_SNP [dm6]	C	T	3.276e^-4	0.913	INTERGENIC
2R	19821847	2R_19821847_SNP [dm3] 2R_23934324_SNP [dm6]	A	T	3.276e^-4	0.913	UPSTREAM Ca-P60A INTRON Ca-P60A	TF binding site mE1_TFBS_HSA
X	18885876	X_18885876_SNP [dm3] X_18991843_SNP [dm6]	T	A	3.282e^-4	0.913	INTRON CG43759
2R	20355730	2R_20355730_SNP [dm3] 2R_24468207_SNP [dm6]	C	T	3.282e^-4	0.913	INTRON CG13579
3L	2660383	3L_2660383_SNP [dm3] 3L_2660383_SNP [dm6]	G	A	3.282e^-4	0.913	SYNONYMOUS_CODING CG33233 UTR_3_PRIME CG33233 INTRON Fife	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12247420	2L_12247420_SNP [dm3] 2L_12247420_SNP [dm6]	T	C	3.284e^-4	0.913	INTRON aret
3L	11924551	3L_11924551_SNP [dm3] 3L_11931451_SNP [dm6]	T	A	3.285e^-4	0.913	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9833923	3R_9833923_SNP [dm3] 3R_14008201_SNP [dm6]	G	A	3.286e^-4	0.913	INTRON rdx
X	10197456	X_10197456_SNP [dm3] X_10303423_SNP [dm6]	A	G	3.288e^-4	0.913	INTRON alpha-Man-I
2L	19074240	2L_19074240_SNP [dm3] 2L_19074240_SNP [dm6]	T	C	3.289e^-4	0.913	UPSTREAM CG17572 DOWNSTREAM CR33315 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22032681	3R_22032681_SNP [dm3] 3R_26206959_SNP [dm6]	G	A	3.302e^-4	0.913	INTRON CR44320
2R	10640431	2R_10640431_SNP [dm3] 2R_14752926_SNP [dm6]	A	T	3.303e^-4	0.913	UPSTREAM Rpn6 DOWNSTREAM CG10151 INTRON ave	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	1233526	3L_1233526_SNP [dm3] 3L_1233526_SNP [dm6]	G	A	3.308e^-4	0.913	SYNONYMOUS_CODING CG33965 UPSTREAM CG33966 DOWNSTREAM mwh	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10876276	2R_10876276_SNP [dm3] 2R_14988771_SNP [dm6]	A	C	3.322e^-4	0.913	SYNONYMOUS_CODING CG7639 INTRON pcs	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5031166	X_5031166_SNP [dm3] X_5137133_SNP [dm6]	C	A	3.331e^-4	0.913	INTRON rg & 1 other
3R	8591424	3R_8591424_SNP [dm3] 3R_12765702_SNP [dm6]	A	G	3.342e^-4	0.913	INTRON beat-Vc
2L	19837372	2L_19837372_SNP [dm3] 2L_19837372_SNP [dm6]	C	A	3.343e^-4	0.913	INTRON sick	TF binding site mE1_TFBS_cad
3L	10842529	3L_10842529_SNP [dm3] 3L_10849429_SNP [dm6]	A	C	3.345e^-4	0.913	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	9772816	X_9772816_SNP [dm3] X_9878783_SNP [dm6]	G	T	3.346e^-4	0.913	INTRON CG1468
3L	2167560	3L_2167560_SNP [dm3] 3L_2167560_SNP [dm6]	A	G	3.355e^-4	0.913	UTR_3_PRIME CG15879
3L	16064824	3L_16064824_SNP [dm3] 3L_16071724_SNP [dm6]	G	A	3.357e^-4	0.913	INTRON Mbs
2R	20171826	2R_20171826_SNP [dm3] 2R_24284303_SNP [dm6]	C	T	3.358e^-4	0.913	UPSTREAM nvy INTRON nvy
2L	13687910	2L_13687910_SNP [dm3] 2L_13687910_SNP [dm6]	C	T	3.359e^-4	0.913	INTRON CG31814
2R	8360659	2R_8360659_SNP [dm3] 2R_12473154_SNP [dm6]	A	C	3.362e^-4	0.913	SYNONYMOUS_CODING CG8550
2R	16466402	2R_16466402_DEL [dm3] 2R_20578897_DEL [dm6]	GACTCAG	G	3.366e^-4	0.913	INTRON qsm
3L	7612796	3L_7612796_SNP [dm3] 3L_7619696_SNP [dm6]	G	T	3.374e^-4	0.913	INTRON CG33275
2R	13100418	2R_13100418_SNP [dm3] 2R_17212913_SNP [dm6]	C	T	3.378e^-4	0.913	INTERGENIC
2R	20747415	2R_20747415_DEL [dm3] 2R_24859892_DEL [dm6]	GGCCGGCCATGTGGCTCCTC...	T	3.386e^-4	0.913	EXON CR44829
3R	23441340	3R_23441340_SNP [dm3] 3R_27615618_SNP [dm6]	G	C	3.387e^-4	0.913	INTRON Tusp
3R	10002402	3R_10002402_SNP [dm3] 3R_14176680_SNP [dm6]	C	T	3.387e^-4	0.913	UTR_3_PRIME Dop1R1 DOWNSTREAM Dop1R1
2L	7768272	2L_7768272_SNP [dm3] 2L_7768272_SNP [dm6]	T	C	3.394e^-4	0.913	INTRON CG7191
2L	11074253	2L_11074253_SNP [dm3] 2L_11074253_SNP [dm6]	A	C	3.398e^-4	0.913	DOWNSTREAM CR45725 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	26042451	3R_26042451_SNP [dm3] 3R_30216729_SNP [dm6]	A	T	3.401e^-4	0.913	INTRON CecC
2L	10365831	2L_10365831_SNP [dm3] 2L_10365831_SNP [dm6]	G	C	3.408e^-4	0.913	SYNONYMOUS_CODING lft UPSTREAM CG5056	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
2R	17606551	2R_17606551_SNP [dm3] 2R_21719046_SNP [dm6]	G	T	3.414e^-4	0.913	DOWNSTREAM CG30398 INTRON Tango11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
3R	2942395	3R_2942395_SNP [dm3] 3R_7116673_SNP [dm6]	G	A	3.426e^-4	0.913	UTR_5_PRIME Mlp84B INTRON Alh & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15557950	2R_15557950_SNP [dm3] 2R_19670445_SNP [dm6]	G	C	3.437e^-4	0.913	UPSTREAM isopeptidase-T-3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_run mE1_TFBS_Ubx
2R	8360628	2R_8360628_SNP [dm3] 2R_12473123_SNP [dm6]	T	A	3.438e^-4	0.913	SYNONYMOUS_CODING CG8550
2L	15126839	2L_15126839_SNP [dm3] 2L_15126839_SNP [dm6]	A	T	3.441e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17543031	2R_17543031_SNP [dm3] 2R_21655526_SNP [dm6]	G	T	3.444e^-4	0.913	DOWNSTREAM CR43786 INTRON CG10082	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10636889	2L_10636889_SNP [dm3] 2L_10636889_SNP [dm6]	C	T	3.452e^-4	0.913	INTRON CG7329
3L	1239329	3L_1239329_SNP [dm3] 3L_1239329_SNP [dm6]	G	A	3.452e^-4	0.913	INTRON CG9194	TF binding site mE1_TFBS_cad
2L	12887474	2L_12887474_SNP [dm3] 2L_12887474_SNP [dm6]	T	A	3.467e^-4	0.913	INTERGENIC
3R	9165842	3R_9165842_SNP [dm3] 3R_13340120_SNP [dm6]	T	A	3.472e^-4	0.913	UTR_5_PRIME PK2-R1
3R	5878383	3R_5878383_SNP [dm3] 3R_10052661_SNP [dm6]	G	T	3.489e^-4	0.913	UPSTREAM Npc2e DOWNSTREAM CR44192 INTRON Fancl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14915795	3R_14915795_SNP [dm3] 3R_19090073_SNP [dm6]	G	A	3.492e^-4	0.913	INTRON cdi
3R	5878395	3R_5878395_SNP [dm3] 3R_10052673_SNP [dm6]	A	G	3.511e^-4	0.913	UPSTREAM Npc2e DOWNSTREAM CR44192 INTRON Fancl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11525585	3L_11525585_SNP [dm3] 3L_11532485_SNP [dm6]	T	A	3.512e^-4	0.913	INTRON Mob2
3R	17492800	3R_17492800_SNP [dm3] 3R_21667078_SNP [dm6]	C	T	3.516e^-4	0.913	DOWNSTREAM CG15497 INTRON DNApol-alpha180	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16730048	3R_16730048_SNP [dm3] 3R_20904326_SNP [dm6]	C	T	3.517e^-4	0.913	SYNONYMOUS_CODING CG5621 DOWNSTREAM TotX
2L	21968495	2L_21968495_SNP [dm3] 2L_21968495_SNP [dm6]	G	T	3.525e^-4	0.913	INTERGENIC
3R	22035532	3R_22035532_SNP [dm3] 3R_26209810_SNP [dm6]	C	T	3.527e^-4	0.913	INTRON CR44320
3R	16905022	3R_16905022_SNP [dm3] 3R_21079300_SNP [dm6]	C	T	3.539e^-4	0.913	INTRON HHEX
3R	11634140	3R_11634140_SNP [dm3] 3R_15808418_SNP [dm6]	G	A	3.542e^-4	0.913	INTRON alpha-Man-IIb
3R	13657398	3R_13657398_SNP [dm3] 3R_17831676_SNP [dm6]	C	G	3.546e^-4	0.913	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	14857610	2L_14857610_SNP [dm3] 2L_14857610_SNP [dm6]	T	A	3.551e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	3078373	3L_3078373_SNP [dm3] 3L_3078373_SNP [dm6]	G	C	3.556e^-4	0.913	INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	19503221	3R_19503221_SNP [dm3] 3R_23677499_SNP [dm6]	G	C	3.557e^-4	0.913	SYNONYMOUS_CODING CG13822	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19024797	2R_19024797_SNP [dm3] 2R_23137274_SNP [dm6]	C	T	3.570e^-4	0.913	INTERGENIC
2L	22275835	2L_22275835_SNP [dm3] 2L_22275835_SNP [dm6]	C	T	3.570e^-4	0.913	INTERGENIC
3R	27218267	3R_27218267_SNP [dm3] 3R_31392545_SNP [dm6]	T	G	3.579e^-4	0.913	NON_SYNONYMOUS_CODING CG31204 DOWNSTREAM CG1607	TF binding site mE1_TFBS_sens
3L	2294190	3L_2294190_SNP [dm3] 3L_2294190_SNP [dm6]	G	C	3.581e^-4	0.913	INTRON MsR2
3L	723577	3L_723577_SNP [dm3] 3L_723577_SNP [dm6]	T	A	3.595e^-4	0.913	INTERGENIC
3R	9318418	3R_9318418_SNP [dm3] 3R_13492696_SNP [dm6]	G	A	3.596e^-4	0.913	INTERGENIC
2L	7057433	2L_7057433_SNP [dm3] 2L_7057433_SNP [dm6]	C	T	3.600e^-4	0.913	SYNONYMOUS_CODING Mnn1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5243768	X_5243768_SNP [dm3] X_5349735_SNP [dm6]	C	T	3.604e^-4	0.913	INTRON SK
3R	13115252	3R_13115252_SNP [dm3] 3R_17289530_SNP [dm6]	C	G	3.614e^-4	0.913	DOWNSTREAM CR43490 INTERGENIC
3R	19625898	3R_19625898_SNP [dm3] 3R_23800176_SNP [dm6]	C	G	3.617e^-4	0.913	SYNONYMOUS_CODING mbc
2R	11177864	2R_11177864_SNP [dm3] 2R_15290359_SNP [dm6]	A	G	3.624e^-4	0.913	INTRON Trpm
X	1954195	X_1954195_SNP [dm3] X_2060162_SNP [dm6]	T	C	3.636e^-4	0.913	SYNONYMOUS_CODING Sik2	TF binding site mE1_TFBS_chinmo
2L	21851919	2L_21851919_INS [dm3] 2L_21851919_INS [dm6]	T	TTCT	3.642e^-4	0.913	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	18051426	2R_18051426_SNP [dm3] 2R_22163921_SNP [dm6]	G	C	3.655e^-4	0.913	NON_SYNONYMOUS_CODING CG34206 INTRON a
2L	15537038	2L_15537038_SNP [dm3] 2L_15537038_SNP [dm6]	T	G	3.656e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	12881749	3R_12881749_SNP [dm3] 3R_17056027_SNP [dm6]	G	T	3.657e^-4	0.913	INTRON Dad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	10197463	X_10197463_SNP [dm3] X_10303430_SNP [dm6]	G	A	3.661e^-4	0.913	INTRON alpha-Man-I
X	1651635	X_1651635_SNP [dm3] X_1757602_SNP [dm6]	A	G	3.665e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	14102730	X_14102730_SNP [dm3] X_14208697_SNP [dm6]	T	C	3.668e^-4	0.913	INTRON l_1_G0007 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	20896070	2R_20896070_SNP [dm3] 2R_25008547_SNP [dm6]	C	T	3.670e^-4	0.913	INTRON zip	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	21795519	3R_21795519_SNP [dm3] 3R_25969797_SNP [dm6]	T	C	3.673e^-4	0.913	UPSTREAM CG42261 INTERGENIC
2R	4023273	2R_4023273_SNP [dm3] 2R_8135768_SNP [dm6]	T	G	3.683e^-4	0.913	UPSTREAM Obp44a INTERGENIC
2R	12661617	2R_12661617_SNP [dm3] 2R_16774112_SNP [dm6]	A	T	3.688e^-4	0.913	UPSTREAM Arp53D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3L	1561176	3L_1561176_SNP [dm3] 3L_1561176_SNP [dm6]	C	T	3.691e^-4	0.913	SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	6584111	3L_6584111_SNP [dm3] 3L_6591011_SNP [dm6]	C	T	3.697e^-4	0.913	INTRON CG18769
3L	6584119	3L_6584119_SNP [dm3] 3L_6591019_SNP [dm6]	A	G	3.697e^-4	0.913	INTRON CG18769
X	3152966	X_3152966_SNP [dm3] X_3258933_SNP [dm6]	A	T	3.699e^-4	0.913	INTRON dnc
X	12021601	X_12021601_SNP [dm3] X_12127568_SNP [dm6]	A	G	3.701e^-4	0.913	UPSTREAM Ten-a INTRON Ten-a
3L	10273993	3L_10273993_SNP [dm3] 3L_10280893_SNP [dm6]	C	A	3.704e^-4	0.913	INTERGENIC
2L	19238281	2L_19238281_SNP [dm3] 2L_19238281_SNP [dm6]	A	G	3.730e^-4	0.913	INTERGENIC
2L	16711940	2L_16711940_SNP [dm3] 2L_16711940_SNP [dm6]	A	T	3.736e^-4	0.913	INTRON CG31808
3L	11586138	3L_11586138_SNP [dm3] 3L_11593038_SNP [dm6]	A	G	3.739e^-4	0.913	UPSTREAM CR45442 & 1 other DOWNSTREAM CR45443 & 1 other INTERGENIC
3R	23509875	3R_23509875_SNP [dm3] 3R_27684153_SNP [dm6]	G	T	3.740e^-4	0.913	INTERGENIC
2L	12245494	2L_12245494_SNP [dm3] 2L_12245494_SNP [dm6]	G	A	3.740e^-4	0.913	INTRON aret
2R	10640430	2R_10640430_SNP [dm3] 2R_14752925_SNP [dm6]	A	C	3.744e^-4	0.913	UPSTREAM Rpn6 DOWNSTREAM CG10151 INTRON ave	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
X	6748344	X_6748344_SNP [dm3] X_6854311_SNP [dm6]	G	T	3.756e^-4	0.913	INTRON CG14434	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	18542911	3L_18542911_SNP [dm3] 3L_18549811_SNP [dm6]	C	A	3.756e^-4	0.913	INTERGENIC
2R	2425819	2R_2425819_SNP [dm3] 2R_6538314_SNP [dm6]	T	G	3.758e^-4	0.913	INTRON jing
2R	17827341	2R_17827341_SNP [dm3] 2R_21939836_SNP [dm6]	C	T	3.759e^-4	0.913	INTRON Fili
2R	18058487	2R_18058487_SNP [dm3] 2R_22170982_SNP [dm6]	T	C	3.761e^-4	0.913	SYNONYMOUS_CODING a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13648703	2R_13648703_SNP [dm3] 2R_17761198_SNP [dm6]	G	A	3.763e^-4	0.913	UTR_5_PRIME CG5009 DOWNSTREAM HLH54F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	13657464	3R_13657464_DEL [dm3] 3R_17831742_DEL [dm6]	TTGATA	T	3.768e^-4	0.913	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	13038928	2L_13038928_SNP [dm3] 2L_13038928_SNP [dm6]	G	A	3.772e^-4	0.913	INTRON CG9932
3L	1585733	3L_1585733_SNP [dm3] 3L_1585733_SNP [dm6]	C	T	3.779e^-4	0.913	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	23513496	3R_23513496_SNP [dm3] 3R_27687774_SNP [dm6]	A	G	3.781e^-4	0.913	NON_SYNONYMOUS_CODING CG31055 INTRON CG12880	TF binding site mE1_TFBS_chinmo
2L	19074617	2L_19074617_SNP [dm3] 2L_19074617_SNP [dm6]	T	C	3.782e^-4	0.913	UPSTREAM CG17572 DOWNSTREAM CR33315 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	11634069	3R_11634069_SNP [dm3] 3R_15808347_SNP [dm6]	A	G	3.784e^-4	0.913	INTRON alpha-Man-IIb
3R	19625870	3R_19625870_SNP [dm3] 3R_23800148_SNP [dm6]	G	A	3.786e^-4	0.913	NON_SYNONYMOUS_CODING mbc
3R	13528316	3R_13528316_SNP [dm3] 3R_17702594_SNP [dm6]	A	C	3.788e^-4	0.913	INTRON osa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	11858492	3R_11858492_SNP [dm3] 3R_16032770_SNP [dm6]	G	C	3.797e^-4	0.913	INTRON pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	20405232	3R_20405232_SNP [dm3] 3R_24579510_SNP [dm6]	G	A	3.797e^-4	0.913	INTRON CG13624	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21578074	3R_21578074_SNP [dm3] 3R_25752352_SNP [dm6]	T	C	3.802e^-4	0.913	INTRON LpR1
X	12021978	X_12021978_SNP [dm3] X_12127945_SNP [dm6]	A	G	3.805e^-4	0.913	UPSTREAM Ten-a INTRON Ten-a
2R	10838288	2R_10838288_SNP [dm3] 2R_14950783_SNP [dm6]	T	C	3.807e^-4	0.913	UTR_5_PRIME aPKC INTRON aPKC
2L	3755361	2L_3755361_SNP [dm3] 2L_3755361_SNP [dm6]	A	T	3.807e^-4	0.913	DOWNSTREAM CG10019 INTERGENIC
2L	9274953	2L_9274953_INS [dm3] 2L_9274953_INS [dm6]	A	AA	3.814e^-4	0.913	INTRON Ggamma30A
3R	13469360	3R_13469360_SNP [dm3] 3R_17643638_SNP [dm6]	A	G	3.823e^-4	0.913	INTRON CG43175
2L	7075699	2L_7075699_SNP [dm3] 2L_7075699_SNP [dm6]	T	C	3.825e^-4	0.913	INTRON Pvf2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7051644	2L_7051644_SNP [dm3] 2L_7051644_SNP [dm6]	T	C	3.832e^-4	0.913	SPLICE_SITE_REGION milt SYNONYMOUS_CODING milt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14011624	2R_14011624_SNP [dm3] 2R_18124119_SNP [dm6]	A	G	3.835e^-4	0.913	UPSTREAM stau INTRON stau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11821876	3R_11821876_SNP [dm3] 3R_15996154_SNP [dm6]	C	A	3.837e^-4	0.913	INTRON srp	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	11399198	3L_11399198_SNP [dm3] 3L_11406098_SNP [dm6]	C	A	3.842e^-4	0.913	DOWNSTREAM CR44363 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cnc
X	18838733	X_18838733_INS [dm3] X_18944700_INS [dm6]	T	TAT	3.844e^-4	0.913	INTRON CG43759
2R	8447091	2R_8447091_SNP [dm3] 2R_12559586_SNP [dm6]	T	C	3.846e^-4	0.913	SYNONYMOUS_CODING fra
2L	2884577	2L_2884577_SNP [dm3] 2L_2884577_SNP [dm6]	C	T	3.846e^-4	0.913	INTRON NTPase	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_hkb mE1_TFBS_Trl
2R	16817260	2R_16817260_SNP [dm3] 2R_20929755_SNP [dm6]	T	G	3.854e^-4	0.913	INTRON Rx
2R	9459318	2R_9459318_SNP [dm3] 2R_13571813_SNP [dm6]	C	A	3.856e^-4	0.913	SYNONYMOUS_CODING CG42807	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	17492792	3R_17492792_SNP [dm3] 3R_21667070_SNP [dm6]	A	T	3.859e^-4	0.913	DOWNSTREAM CG15497 INTRON DNApol-alpha180	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1408391	3L_1408391_SNP [dm3] 3L_1408391_SNP [dm6]	T	C	3.864e^-4	0.913	INTRON Ptp61F
2R	19237680	2R_19237680_SNP [dm3] 2R_23350157_SNP [dm6]	C	T	3.865e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	23441327	3R_23441327_SNP [dm3] 3R_27615605_SNP [dm6]	G	A	3.867e^-4	0.913	INTRON Tusp
2R	13588182	2R_13588182_SNP [dm3] 2R_17700677_SNP [dm6]	A	T	3.871e^-4	0.913	UPSTREAM snoRNA:U76:54Eb & 3 others DOWNSTREAM snoRNA:Me28S-A3407a & 3 others EXON Uhg1
3L	1561196	3L_1561196_SNP [dm3] 3L_1561196_SNP [dm6]	G	T	3.894e^-4	0.913	NON_SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
X	14919029	X_14919029_SNP [dm3] X_15024996_SNP [dm6]	G	A	3.894e^-4	0.913	INTRON hiw & 1 other	TF binding site BDTNP1_TFBS_dl
2R	15556097	2R_15556097_SNP [dm3] 2R_19668592_SNP [dm6]	C	T	3.897e^-4	0.913	INTRON hrg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
3L	6584143	3L_6584143_SNP [dm3] 3L_6591043_SNP [dm6]	C	T	3.900e^-4	0.913	INTRON CG18769
3R	14933478	3R_14933478_SNP [dm3] 3R_19107756_SNP [dm6]	T	A	3.904e^-4	0.913	INTRON CG6040
2L	12234561	2L_12234561_SNP [dm3] 2L_12234561_SNP [dm6]	A	G	3.905e^-4	0.913	INTRON aret
3R	2105662	3R_2105662_SNP [dm3] 3R_6279940_SNP [dm6]	G	A	3.910e^-4	0.913	INTRON Osi12
2R	13828095	2R_13828095_SNP [dm3] 2R_17940590_SNP [dm6]	A	G	3.912e^-4	0.913	INTERGENIC
3R	11694760	3R_11694760_SNP [dm3] 3R_15869038_SNP [dm6]	A	G	3.917e^-4	0.913	INTRON CG31183
3R	11694769	3R_11694769_DEL [dm3] 3R_15869047_DEL [dm6]	AGGAACT	A	3.917e^-4	0.913	INTRON CG31183
3R	12035687	3R_12035687_SNP [dm3] 3R_16209965_SNP [dm6]	T	C	3.924e^-4	0.913	UPSTREAM CR45638 DOWNSTREAM CR45640 & 1 other INTERGENIC
2L	18628692	2L_18628692_SNP [dm3] 2L_18628692_SNP [dm6]	C	T	3.929e^-4	0.913	INTRON MESR3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	17492660	3R_17492660_SNP [dm3] 3R_21666938_SNP [dm6]	C	T	3.930e^-4	0.913	DOWNSTREAM CG15497 INTRON DNApol-alpha180	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10084868	3L_10084868_SNP [dm3] 3L_10091768_SNP [dm6]	C	A	3.930e^-4	0.913	DOWNSTREAM CG32054 INTRON dpr6 & 1 other	TF binding site BDTNP1_TFBS_twi
2R	14471638	2R_14471638_SNP [dm3] 2R_18584133_SNP [dm6]	A	G	3.948e^-4	0.913	UPSTREAM GEFmeso INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	5849491	2R_5849491_SNP [dm3] 2R_9961986_SNP [dm6]	C	T	3.958e^-4	0.913	SYNONYMOUS_CODING Pal1	TF binding site mE1_TFBS_cad
3L	2151625	3L_2151625_SNP [dm3] 3L_2151625_SNP [dm6]	T	A	3.962e^-4	0.913	UTR_5_PRIME zormin	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	12132497	3R_12132497_SNP [dm3] 3R_16306775_SNP [dm6]	C	A	3.964e^-4	0.913	NON_SYNONYMOUS_CODING Zip89B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13610574	3L_13610574_SNP [dm3] 3L_13617474_SNP [dm6]	T	A	3.976e^-4	0.913	INTRON bru-3
3R	12882685	3R_12882685_SNP [dm3] 3R_17056963_SNP [dm6]	G	A	3.981e^-4	0.913	INTRON Dad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	12876888	3R_12876888_SNP [dm3] 3R_17051166_SNP [dm6]	T	C	3.988e^-4	0.913	INTERGENIC
2R	8360650	2R_8360650_SNP [dm3] 2R_12473145_SNP [dm6]	C	A	3.991e^-4	0.913	NON_SYNONYMOUS_CODING CG8550
3L	5956698	3L_5956698_SNP [dm3] 3L_5963598_SNP [dm6]	A	G	3.995e^-4	0.913	INTERGENIC
X	14918927	X_14918927_SNP [dm3] X_15024894_SNP [dm6]	G	A	3.998e^-4	0.913	SYNONYMOUS_CODING be INTRON hiw	TF binding site BDTNP1_TFBS_dl
3L	12199197	3L_12199197_SNP [dm3] 3L_12206097_SNP [dm6]	A	T	4.004e^-4	0.913	UPSTREAM CG5626 DOWNSTREAM app INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
X	10873489	X_10873489_SNP [dm3] X_10979456_SNP [dm6]	C	T	4.014e^-4	0.913	INTRON CG42339
X	5462937	X_5462937_SNP [dm3] X_5568904_SNP [dm6]	A	G	4.033e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	10986803	3L_10986803_DEL [dm3] 3L_10993703_DEL [dm6]	TCAAAAACGCGCTCAAG...	T	4.037e^-4	0.913	INTRON klu	TF binding site BDTNP1_TFBS_dl
2R	7582834	2R_7582834_SNP [dm3] 2R_11695329_SNP [dm6]	A	T	4.039e^-4	0.913	UTR_3_PRIME CG13197
2L	22101542	2L_22101542_SNP [dm3] 2L_22101542_SNP [dm6]	A	C	4.039e^-4	0.913	INTERGENIC
2L	11074239	2L_11074239_SNP [dm3] 2L_11074239_SNP [dm6]	G	T	4.044e^-4	0.913	DOWNSTREAM CR45725 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	13345284	2L_13345284_INS [dm3] 2L_13345284_INS [dm6]	T	TTAT	4.051e^-4	0.913	INTERGENIC
3L	19457612	3L_19457612_SNP [dm3] 3L_19464512_SNP [dm6]	G	C	4.054e^-4	0.913	NON_SYNONYMOUS_CODING CG14095
2L	11011878	2L_11011878_SNP [dm3] 2L_11011878_SNP [dm6]	C	T	4.055e^-4	0.913	SYNONYMOUS_CODING dUTPase UPSTREAM Art8 DOWNSTREAM Nup154	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	13115437	3R_13115437_SNP [dm3] 3R_17289715_SNP [dm6]	T	A	4.056e^-4	0.913	DOWNSTREAM CR43490 INTERGENIC
2R	14416057	2R_14416057_SNP [dm3] 2R_18528552_SNP [dm6]	G	A	4.061e^-4	0.913	INTRON CG10924	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13896715	3R_13896715_SNP [dm3] 3R_18070993_SNP [dm6]	A	T	4.064e^-4	0.913	INTERGENIC
X	2075446	X_2075446_SNP [dm3] X_2181413_SNP [dm6]	C	T	4.074e^-4	0.913	UPSTREAM CR44690 DOWNSTREAM Cyp4ae1 INTRON pn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	16276260	3R_16276260_SNP [dm3] 3R_20450538_SNP [dm6]	A	C	4.078e^-4	0.913	UPSTREAM Gfrl INTRON Gfrl
3R	22512798	3R_22512798_SNP [dm3] 3R_26687076_SNP [dm6]	G	A	4.085e^-4	0.913	INTERGENIC
2L	12171683	2L_12171683_SNP [dm3] 2L_12171683_SNP [dm6]	A	G	4.085e^-4	0.913	UTR_3_PRIME CG6583 DOWNSTREAM CG17217
3L	10880293	3L_10880293_DEL [dm3] 3L_10887193_DEL [dm6]	ATTTA	A	4.086e^-4	0.913	UPSTREAM CG6404 INTERGENIC
2R	8446930	2R_8446930_SNP [dm3] 2R_12559425_SNP [dm6]	T	G	4.114e^-4	0.913	INTRON fra
3R	13023568	3R_13023568_SNP [dm3] 3R_17197846_SNP [dm6]	C	G	4.117e^-4	0.913	INTRON Mur89F
3R	12035679	3R_12035679_SNP [dm3] 3R_16209957_SNP [dm6]	T	C	4.117e^-4	0.913	UPSTREAM CR45638 DOWNSTREAM CR45640 & 1 other INTERGENIC
3R	24514596	3R_24514596_SNP [dm3] 3R_28688874_SNP [dm6]	A	G	4.119e^-4	0.913	UPSTREAM CG9990 INTRON CG9990
3R	17966205	3R_17966205_SNP [dm3] 3R_22140483_SNP [dm6]	G	A	4.121e^-4	0.913	INTRON SKIP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23558563	3R_23558563_SNP [dm3] 3R_27732841_SNP [dm6]	G	A	4.130e^-4	0.913	INTERGENIC
2R	15939923	2R_15939923_INS [dm3] 2R_20052418_INS [dm6]	G	GACCGAAG	4.132e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	10119599	3R_10119599_INS [dm3] 3R_14293877_INS [dm6]	C	CTGTTACTCTCTAC...	4.145e^-4	0.913	INTRON CG12207
3R	10119602	3R_10119602_SNP [dm3] 3R_14293880_SNP [dm6]	T	A	4.145e^-4	0.913	INTRON CG12207
3L	1449022	3L_1449022_SNP [dm3] 3L_1449022_SNP [dm6]	G	A	4.149e^-4	0.913	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc
3L	12627066	3L_12627066_SNP [dm3] 3L_12633966_SNP [dm6]	G	A	4.155e^-4	0.913	INTRON CR32111	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12843211	3L_12843211_SNP [dm3] 3L_12850111_SNP [dm6]	T	A	4.156e^-4	0.913	UTR_5_PRIME CG10948 UPSTREAM Wbp2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Ubx
2L	10532404	2L_10532404_SNP [dm3] 2L_10532404_SNP [dm6]	T	C	4.157e^-4	0.913	SYNONYMOUS_CODING CG18301 DOWNSTREAM Lip4
2L	12171953	2L_12171953_SNP [dm3] 2L_12171953_SNP [dm6]	G	C	4.165e^-4	0.913	DOWNSTREAM CG17217 INTRON CG6583	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	9332208	3L_9332208_SNP [dm3] 3L_9339108_SNP [dm6]	A	G	4.168e^-4	0.913	DOWNSTREAM PGRP-LA INTRON PGRP-LC
2L	12590186	2L_12590186_SNP [dm3] 2L_12590186_SNP [dm6]	T	C	4.170e^-4	0.913	INTRON nub
3L	13898839	3L_13898839_SNP [dm3] 3L_13905739_SNP [dm6]	G	T	4.173e^-4	0.913	INTERGENIC
3R	24785271	3R_24785271_SNP [dm3] 3R_28959549_SNP [dm6]	A	G	4.193e^-4	0.913	INTRON CG14521
2L	1975018	2L_1975018_SNP [dm3] 2L_1975018_SNP [dm6]	G	C	4.193e^-4	0.913	DOWNSTREAM CG15356 INTRON Der-1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12021524	X_12021524_SNP [dm3] X_12127491_SNP [dm6]	T	C	4.236e^-4	0.913	UPSTREAM Ten-a INTRON Ten-a
2R	20856814	2R_20856814_SNP [dm3] 2R_24969291_SNP [dm6]	T	C	4.238e^-4	0.913	UPSTREAM CG3776 INTRON RpL19	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2979778	X_2979778_SNP [dm3] X_3085745_SNP [dm6]	A	T	4.240e^-4	0.913	INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	25871588	3R_25871588_SNP [dm3] 3R_30045866_SNP [dm6]	T	A	4.243e^-4	0.913	UTR_5_PRIME RpL32 UPSTREAM CG7943 DOWNSTREAM Sry-delta INTRON RpL32	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3R	26419796	3R_26419796_SNP [dm3] 3R_30594074_SNP [dm6]	C	T	4.245e^-4	0.913	INTRON CG2246
3L	3354923	3L_3354923_SNP [dm3] 3L_3354923_SNP [dm6]	T	A	4.250e^-4	0.913	INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	15349549	2R_15349549_SNP [dm3] 2R_19462044_SNP [dm6]	T	C	4.257e^-4	0.913	UPSTREAM par-1 INTRON par-1	TF binding site mE1_TFBS_Trl
3L	5966799	3L_5966799_INS [dm3] 3L_5973699_INS [dm6]	T	TGGCAGAGTAAGCCCCT...	4.261e^-4	0.913	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	2077402	X_2077402_SNP [dm3] X_2183369_SNP [dm6]	G	T	4.265e^-4	0.913	SYNONYMOUS_CODING Nmd3 DOWNSTREAM pn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	12274966	2L_12274966_SNP [dm3] 2L_12274966_SNP [dm6]	G	T	4.274e^-4	0.913	INTRON aret
3R	8489268	3R_8489268_SNP [dm3] 3R_12663546_SNP [dm6]	A	C	4.277e^-4	0.913	UPSTREAM CG14395 INTRON CG14395
2R	3737694	2R_3737694_SNP [dm3] 2R_7850189_SNP [dm6]	G	T	4.291e^-4	0.913	INTRON Dgk	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6736983	3L_6736983_SNP [dm3] 3L_6743883_SNP [dm6]	C	T	4.293e^-4	0.913	UPSTREAM dikar DOWNSTREAM velo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_ttk
2L	12887409	2L_12887409_SNP [dm3] 2L_12887409_SNP [dm6]	A	C	4.296e^-4	0.913	INTERGENIC
2L	6255968	2L_6255968_SNP [dm3] 2L_6255968_SNP [dm6]	A	G	4.304e^-4	0.913	SYNONYMOUS_CODING CG9486 INTRON Ddr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17607601	2R_17607601_INS [dm3] 2R_21720096_INS [dm6]	T	TTAC	4.306e^-4	0.913	UPSTREAM LBR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	22582809	3R_22582809_SNP [dm3] 3R_26757087_SNP [dm6]	A	T	4.314e^-4	0.913	EXON CR45562
3R	8429011	3R_8429011_SNP [dm3] 3R_12603289_SNP [dm6]	A	G	4.318e^-4	0.913	INTERGENIC
3L	6823082	3L_6823082_INS [dm3] 3L_6829982_INS [dm6]	T	CTAAG	4.320e^-4	0.913	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19797389	2L_19797389_SNP [dm3] 2L_19797389_SNP [dm6]	T	C	4.322e^-4	0.913	INTRON sick
2L	20689700	2L_20689700_SNP [dm3] 2L_20689700_SNP [dm6]	C	G	4.327e^-4	0.913	INTRON Hr38	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo
2L	1974874	2L_1974874_SNP [dm3] 2L_1974874_SNP [dm6]	G	C	4.340e^-4	0.913	SPLICE_SITE_REGION Der-1 DOWNSTREAM CG15356 INTRON Der-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5125923	2L_5125923_SNP [dm3] 2L_5125923_SNP [dm6]	C	A	4.343e^-4	0.913	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad
2R	20761662	2R_20761662_INS [dm3] 2R_24874139_INS [dm6]	A	AA	4.345e^-4	0.913	DOWNSTREAM CG30423 INTRON CG16896	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_sens
2R	20994370	2R_20994370_DEL [dm3] 2R_25106847_DEL [dm6]	GCGGGTTAGTCG...	G	4.351e^-4	0.913	INTRON lov
3R	9373095	3R_9373095_SNP [dm3] 3R_13547373_SNP [dm6]	G	A	4.351e^-4	0.913	INTERGENIC
X	2254909	X_2254909_DEL [dm3] X_2360876_DEL [dm6]	TTTT	T	4.353e^-4	0.913	INTRON ptr
2L	22004236	2L_22004236_SNP [dm3] 2L_22004236_SNP [dm6]	A	T	4.363e^-4	0.913	INTERGENIC
2R	15557855	2R_15557855_SNP [dm3] 2R_19670350_SNP [dm6]	A	T	4.370e^-4	0.913	UPSTREAM isopeptidase-T-3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	14915778	3R_14915778_SNP [dm3] 3R_19090056_SNP [dm6]	A	G	4.372e^-4	0.913	INTRON cdi
3L	1308320	3L_1308320_SNP [dm3] 3L_1308320_SNP [dm6]	A	G	4.373e^-4	0.913	SYNONYMOUS_CODING CG2469 UPSTREAM CG2277	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8870792	3L_8870792_SNP [dm3] 3L_8877692_SNP [dm6]	C	T	4.389e^-4	0.913	INTRON dally
3R	21491476	3R_21491476_SNP [dm3] 3R_25665754_SNP [dm6]	C	A	4.393e^-4	0.913	UPSTREAM Lgr3 DOWNSTREAM RASSF8 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6253304	3R_6253304_SNP [dm3] 3R_10427582_SNP [dm6]	C	A	4.397e^-4	0.913	INTERGENIC
3R	16731240	3R_16731240_SNP [dm3] 3R_20905518_SNP [dm6]	C	T	4.403e^-4	0.913	UTR_5_PRIME TotX INTRON CG5621
2L	8134126	2L_8134126_SNP [dm3] 2L_8134126_SNP [dm6]	A	C	4.415e^-4	0.913	DOWNSTREAM CG8552 & 1 other INTERGENIC
3R	8429017	3R_8429017_SNP [dm3] 3R_12603295_SNP [dm6]	A	T	4.434e^-4	0.913	INTERGENIC
2L	10475844	2L_10475844_INS [dm3] 2L_10475844_INS [dm6]	A	AA	4.435e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14755819	3R_14755819_DEL [dm3] 3R_18930097_DEL [dm6]	CC	C	4.440e^-4	0.913	INTRON CG42613
3R	10119233	3R_10119233_SNP [dm3] 3R_14293511_SNP [dm6]	C	T	4.441e^-4	0.913	INTRON CG12207
X	21118529	X_21118529_SNP [dm3] X_21247502_SNP [dm6]	T	A	4.442e^-4	0.913	INTRON CG32521
2R	14416065	2R_14416065_INS [dm3] 2R_18528560_INS [dm6]	A	ATA	4.458e^-4	0.913	INTRON CG10924	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	18391264	3L_18391264_SNP [dm3] 3L_18398164_SNP [dm6]	G	A	4.465e^-4	0.913	SYNONYMOUS_CODING rpr	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18500883	3R_18500883_SNP [dm3] 3R_22675161_SNP [dm6]	C	T	4.468e^-4	0.913	INTRON CG45058	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	22054653	X_22054653_SNP [dm3] X_22652817_SNP [dm6]	G	A	4.469e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9115616	3L_9115616_SNP [dm3] 3L_9122516_SNP [dm6]	G	T	4.469e^-4	0.913	INTRON bol
2L	6296473	2L_6296473_SNP [dm3] 2L_6296473_SNP [dm6]	G	A	4.476e^-4	0.913	INTRON Ddr
3R	22513020	3R_22513020_SNP [dm3] 3R_26687298_SNP [dm6]	C	T	4.482e^-4	0.913	INTERGENIC
3L	8870974	3L_8870974_SNP [dm3] 3L_8877874_SNP [dm6]	A	G	4.486e^-4	0.913	INTRON dally
2L	21866636	2L_21866636_SNP [dm3] 2L_21866636_SNP [dm6]	G	C	4.491e^-4	0.913	UPSTREAM CR44917 & 1 other DOWNSTREAM CR44919 INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20345607	2R_20345607_SNP [dm3] 2R_24458084_SNP [dm6]	A	T	4.496e^-4	0.913	INTRON CG13579
3L	9440526	3L_9440526_SNP [dm3] 3L_9447426_SNP [dm6]	C	T	4.496e^-4	0.913	INTRON CG3529	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
3L	1405187	3L_1405187_SNP [dm3] 3L_1405187_SNP [dm6]	T	G	4.500e^-4	0.913	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13657259	3R_13657259_DEL [dm3] 3R_17831537_DEL [dm6]	AAC	A	4.501e^-4	0.913	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	21961134	2L_21961134_SNP [dm3] 2L_21961134_SNP [dm6]	T	C	4.511e^-4	0.913	INTERGENIC
3L	1714333	3L_1714333_SNP [dm3] 3L_1714333_SNP [dm6]	A	G	4.512e^-4	0.913	SYNONYMOUS_CODING CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10119234	3R_10119234_SNP [dm3] 3R_14293512_SNP [dm6]	T	G	4.512e^-4	0.913	INTRON CG12207
X	12201906	X_12201906_SNP [dm3] X_12307873_SNP [dm6]	G	A	4.512e^-4	0.913	INTRON Ten-a
3L	7482547	3L_7482547_SNP [dm3] 3L_7489447_SNP [dm6]	C	A	4.525e^-4	0.913	INTERGENIC
2L	21763435	2L_21763435_SNP [dm3] 2L_21763435_SNP [dm6]	A	T	4.525e^-4	0.913	INTRON CG31612
X	18645733	X_18645733_SNP [dm3] X_18751700_SNP [dm6]	C	A	4.534e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	1954294	X_1954294_SNP [dm3] X_2060261_SNP [dm6]	A	G	4.535e^-4	0.913	SYNONYMOUS_CODING Sik2	TF binding site mE1_TFBS_chinmo
3R	4363255	3R_4363255_SNP [dm3] 3R_8537533_SNP [dm6]	A	G	4.537e^-4	0.913	INTERGENIC
X	1629611	X_1629611_SNP [dm3] X_1735578_SNP [dm6]	G	A	4.543e^-4	0.913	DOWNSTREAM Scgdelta INTERGENIC
3L	9704151	3L_9704151_SNP [dm3] 3L_9711051_SNP [dm6]	A	T	4.549e^-4	0.913	DOWNSTREAM CG16711 INTRON SH3PX1
3R	19630214	3R_19630214_SNP [dm3] 3R_23804492_SNP [dm6]	T	A	4.553e^-4	0.913	INTRON CG33111 & 1 other
2R	14416050	2R_14416050_DEL [dm3] 2R_18528545_DEL [dm6]	TAC	T	4.566e^-4	0.913	INTRON CG10924	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8546725	3L_8546725_SNP [dm3] 3L_8553625_SNP [dm6]	A	G	4.567e^-4	0.913	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5355641	X_5355641_SNP [dm3] X_5461608_SNP [dm6]	A	C	4.568e^-4	0.913	INTRON SPR
3R	11631224	3R_11631224_SNP [dm3] 3R_15805502_SNP [dm6]	C	T	4.569e^-4	0.913	INTRON alpha-Man-IIb
3R	11631227	3R_11631227_SNP [dm3] 3R_15805505_SNP [dm6]	C	T	4.569e^-4	0.913	INTRON alpha-Man-IIb
X	5743499	X_5743499_SNP [dm3] X_5849466_SNP [dm6]	A	C	4.571e^-4	0.913	INTERGENIC
3L	12624652	3L_12624652_SNP [dm3] 3L_12631552_SNP [dm6]	C	A	4.580e^-4	0.913	INTRON CR32111
3R	11408118	3R_11408118_INS [dm3] 3R_15582396_INS [dm6]	T	TAT	4.582e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	15245807	3R_15245807_SNP [dm3] 3R_19420085_SNP [dm6]	C	A	4.582e^-4	0.913	INTRON CG31221
2R	13223206	2R_13223206_SNP [dm3] 2R_17335701_SNP [dm6]	G	C	4.591e^-4	0.913	INTRON mbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	13719438	2R_13719438_SNP [dm3] 2R_17831933_SNP [dm6]	T	A	4.591e^-4	0.913	INTRON grh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10880283	3L_10880283_SNP [dm3] 3L_10887183_SNP [dm6]	G	T	4.598e^-4	0.913	UPSTREAM CG6404 INTERGENIC
X	6702809	X_6702809_SNP [dm3] X_6808776_SNP [dm6]	A	T	4.599e^-4	0.913	INTRON pod1
3L	722706	3L_722706_SNP [dm3] 3L_722706_SNP [dm6]	A	G	4.599e^-4	0.913	INTERGENIC
2L	19216035	2L_19216035_SNP [dm3] 2L_19216035_SNP [dm6]	C	T	4.609e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9568674	2L_9568674_INS [dm3] 2L_9568674_INS [dm6]	A	AATTAA	4.613e^-4	0.913	UPSTREAM CG3838 EXON CR44149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16723655	3L_16723655_SNP [dm3] 3L_16730555_SNP [dm6]	C	T	4.615e^-4	0.913	SYNONYMOUS_CODING Dbp73D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22593553	3L_22593553_SNP [dm3] 3L_22600453_SNP [dm6]	T	C	4.615e^-4	0.913	INTRON CG14459
2L	12887468	2L_12887468_SNP [dm3] 2L_12887468_SNP [dm6]	A	G	4.622e^-4	0.913	INTERGENIC
3R	12734829	3R_12734829_SNP [dm3] 3R_16909107_SNP [dm6]	A	T	4.624e^-4	0.913	INTRON iab-8	TF binding site BDTNP1_TFBS_dl
3R	12734833	3R_12734833_DEL [dm3] 3R_16909111_DEL [dm6]	TCT	T	4.624e^-4	0.913	INTRON iab-8	TF binding site BDTNP1_TFBS_dl
2L	15498201	2L_15498201_SNP [dm3] 2L_15498201_SNP [dm6]	T	G	4.634e^-4	0.913	UPSTREAM lace INTERGENIC	TF binding site mE1_TFBS_sens
3R	14162357	3R_14162357_SNP [dm3] 3R_18336635_SNP [dm6]	T	C	4.636e^-4	0.913	INTRON CG15803
2L	19837070	2L_19837070_DEL [dm3] 2L_19837070_DEL [dm6]	GT	G	4.645e^-4	0.913	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17723663	2R_17723663_SNP [dm3] 2R_21836158_SNP [dm6]	G	A	4.646e^-4	0.913	SYNONYMOUS_CODING CG4377
3L	16202254	3L_16202254_SNP [dm3] 3L_16209154_SNP [dm6]	C	T	4.647e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_cad
3R	7353535	3R_7353535_SNP [dm3] 3R_11527813_SNP [dm6]	C	T	4.648e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16761415	2L_16761415_SNP [dm3] 2L_16761415_SNP [dm6]	T	G	4.648e^-4	0.913	UPSTREAM ppk17 INTERGENIC	regulatory region REDfly_CRMs
3L	6736925	3L_6736925_SNP [dm3] 3L_6743825_SNP [dm6]	C	T	4.656e^-4	0.913	UPSTREAM dikar DOWNSTREAM velo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_ttk
3R	11455540	3R_11455540_DEL [dm3] 3R_15629818_DEL [dm6]	TCAGCTTGTCT...	T	4.661e^-4	0.913	INTERGENIC
2L	8744922	2L_8744922_SNP [dm3] 2L_8744922_SNP [dm6]	G	A	4.667e^-4	0.913	INTERGENIC
3L	10829275	3L_10829275_SNP [dm3] 3L_10836175_SNP [dm6]	G	A	4.670e^-4	0.913	INTERGENIC
2R	20954194	2R_20954194_SNP [dm3] 2R_25066671_SNP [dm6]	G	A	4.677e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
3L	5979578	3L_5979578_SNP [dm3] 3L_5986478_SNP [dm6]	T	A	4.678e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	15739277	3L_15739277_SNP [dm3] 3L_15746177_SNP [dm6]	C	T	4.682e^-4	0.913	INTERGENIC
3R	19570657	3R_19570657_SNP [dm3] 3R_23744935_SNP [dm6]	A	G	4.683e^-4	0.913	INTRON Hmgcr
2L	17958250	2L_17958250_SNP [dm3] 2L_17958250_SNP [dm6]	T	G	4.690e^-4	0.913	INTERGENIC
3R	5949778	3R_5949778_DEL [dm3] 3R_10124056_DEL [dm6]	TTTATGATG	T	4.693e^-4	0.913	INTRON knk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13258187	X_13258187_SNP [dm3] X_13364154_SNP [dm6]	C	G	4.696e^-4	0.913	NON_SYNONYMOUS_CODING Syt12
3R	12734863	3R_12734863_SNP [dm3] 3R_16909141_SNP [dm6]	A	C	4.701e^-4	0.913	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12884306	2L_12884306_SNP [dm3] 2L_12884306_SNP [dm6]	T	C	4.702e^-4	0.913	INTERGENIC
3R	12396525	3R_12396525_SNP [dm3] 3R_16570803_SNP [dm6]	T	C	4.702e^-4	0.913	UTR_3_PRIME CG42342 UPSTREAM CG14891 INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	21879829	2L_21879829_SNP [dm3] 2L_21879829_SNP [dm6]	T	A	4.709e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8590138	3L_8590138_SNP [dm3] 3L_8597038_SNP [dm6]	T	C	4.710e^-4	0.913	NON_SYNONYMOUS_CODING CG43078 DOWNSTREAM CG43078	TF binding site mE1_TFBS_chinmo
3R	11586547	3R_11586547_SNP [dm3] 3R_15760825_SNP [dm6]	G	A	4.712e^-4	0.913	INTERGENIC
3R	12066021	3R_12066021_SNP [dm3] 3R_16240299_SNP [dm6]	A	G	4.736e^-4	0.913	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	10880284	3L_10880284_SNP [dm3] 3L_10887184_SNP [dm6]	T	A	4.737e^-4	0.913	UPSTREAM CG6404 INTERGENIC
3R	12734865	3R_12734865_SNP [dm3] 3R_16909143_SNP [dm6]	C	T	4.742e^-4	0.913	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12734876	3R_12734876_SNP [dm3] 3R_16909154_SNP [dm6]	A	G	4.742e^-4	0.913	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	20994546	2R_20994546_SNP [dm3] 2R_25107023_SNP [dm6]	A	T	4.748e^-4	0.913	INTRON lov	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_Med
3R	13188922	3R_13188922_SNP [dm3] 3R_17363200_SNP [dm6]	G	C	4.752e^-4	0.913	INTRON beat-IIa
3L	11227265	3L_11227265_SNP [dm3] 3L_11234165_SNP [dm6]	A	C	4.753e^-4	0.913	INTRON Ir68a
3R	20405199	3R_20405199_SNP [dm3] 3R_24579477_SNP [dm6]	C	A	4.760e^-4	0.913	INTRON CG13624	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7700032	3L_7700032_SNP [dm3] 3L_7706932_SNP [dm6]	G	T	4.760e^-4	0.913	INTRON CG32373 & 1 other
2L	12887500	2L_12887500_SNP [dm3] 2L_12887500_SNP [dm6]	G	A	4.764e^-4	0.913	INTERGENIC
2L	17385513	2L_17385513_SNP [dm3] 2L_17385513_SNP [dm6]	C	A	4.768e^-4	0.913	UPSTREAM CLIP-190 INTRON CLIP-190	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Ubx
2R	13630334	2R_13630334_SNP [dm3] 2R_17742829_SNP [dm6]	T	C	4.771e^-4	0.913	INTRON CG4996
2R	13630347	2R_13630347_SNP [dm3] 2R_17742842_SNP [dm6]	A	T	4.771e^-4	0.913	INTRON CG4996
2L	21957790	2L_21957790_SNP [dm3] 2L_21957790_SNP [dm6]	A	T	4.772e^-4	0.913	UPSTREAM CR44217 & 1 other INTERGENIC
3L	2650818	3L_2650818_SNP [dm3] 3L_2650818_SNP [dm6]	A	G	4.774e^-4	0.913	SYNONYMOUS_CODING Aats-pro UTR_3_PRIME Aats-pro DOWNSTREAM CG1246
2L	18330146	2L_18330146_SNP [dm3] 2L_18330146_SNP [dm6]	A	C	4.785e^-4	0.913	INTRON Fas3
3R	25871368	3R_25871368_SNP [dm3] 3R_30045646_SNP [dm6]	A	T	4.790e^-4	0.913	UPSTREAM CG7943 DOWNSTREAM Sry-delta INTRON RpL32	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens
2L	15083917	2L_15083917_SNP [dm3] 2L_15083917_SNP [dm6]	A	T	4.790e^-4	0.913	INTRON CG15270
3R	11880171	3R_11880171_SNP [dm3] 3R_16054449_SNP [dm6]	T	C	4.792e^-4	0.913	SYNONYMOUS_CODING msps	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA mE1_TFBS_sens
2R	21065808	2R_21065808_SNP [dm3] 2R_25178285_SNP [dm6]	C	T	4.794e^-4	0.913	INTERGENIC
3L	16983394	3L_16983394_SNP [dm3] 3L_16990294_SNP [dm6]	C	A	4.795e^-4	0.913	INTRON Exn
2R	17838653	2R_17838653_SNP [dm3] 2R_21951148_SNP [dm6]	A	C	4.805e^-4	0.913	UPSTREAM CG13488 INTERGENIC
3L	14431707	3L_14431707_SNP [dm3] 3L_14438607_SNP [dm6]	C	A	4.806e^-4	0.913	INTRON bbg	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_inv
3R	13361960	3R_13361960_SNP [dm3] 3R_17536238_SNP [dm6]	C	T	4.809e^-4	0.913	SYNONYMOUS_CODING P5cr-2 UTR_5_PRIME P5cr-2 DOWNSTREAM l_3_07882	TF binding site mE1_TFBS_sens
3R	12504233	3R_12504233_SNP [dm3] 3R_16678511_SNP [dm6]	A	G	4.812e^-4	0.913	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	22004764	2L_22004764_SNP [dm3] 2L_22004764_SNP [dm6]	T	G	4.813e^-4	0.913	INTERGENIC	transposable element FlyBase
2L	13974590	2L_13974590_SNP [dm3] 2L_13974590_SNP [dm6]	G	T	4.815e^-4	0.913	SYNONYMOUS_CODING NimC1
3R	26332982	3R_26332982_SNP [dm3] 3R_30507260_SNP [dm6]	T	A	4.817e^-4	0.913	SYNONYMOUS_CODING CG15539 UPSTREAM CG34041 DOWNSTREAM mir-4908
2R	17619059	2R_17619059_SNP [dm3] 2R_21731554_SNP [dm6]	G	T	4.823e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2912945	2L_2912945_SNP [dm3] 2L_2912945_SNP [dm6]	A	C	4.832e^-4	0.913	INTRON lilli
2R	9127465	2R_9127465_SNP [dm3] 2R_13239960_SNP [dm6]	A	G	4.833e^-4	0.913	UPSTREAM CG4679 INTRON GstE14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12147091	3R_12147091_SNP [dm3] 3R_16321369_SNP [dm6]	G	C	4.838e^-4	0.913	UPSTREAM tRNA:F2:89BC & 2 others INTRON Sulf1
3R	10910288	3R_10910288_SNP [dm3] 3R_15084566_SNP [dm6]	T	C	4.839e^-4	0.913	INTRON CG6966
2L	2439159	2L_2439159_SNP [dm3] 2L_2439159_SNP [dm6]	T	C	4.859e^-4	0.913	INTRON dpp	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	722555	3L_722555_SNP [dm3] 3L_722555_SNP [dm6]	G	T	4.861e^-4	0.913	INTERGENIC
2L	8059818	2L_8059818_SNP [dm3] 2L_8059818_SNP [dm6]	C	T	4.863e^-4	0.913	SYNONYMOUS_CODING poe
3R	10002372	3R_10002372_SNP [dm3] 3R_14176650_SNP [dm6]	T	C	4.864e^-4	0.913	UTR_3_PRIME Dop1R1 DOWNSTREAM Dop1R1
3R	13595456	3R_13595456_SNP [dm3] 3R_17769734_SNP [dm6]	T	G	4.867e^-4	0.913	UTR_3_PRIME CG43102
2R	9459072	2R_9459072_SNP [dm3] 2R_13571567_SNP [dm6]	C	G	4.869e^-4	0.913	UTR_3_PRIME CG42807	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9605818	3R_9605818_SNP [dm3] 3R_13780096_SNP [dm6]	C	A	4.870e^-4	0.913	NON_SYNONYMOUS_CODING CG9288 UTR_3_PRIME CG42375 UPSTREAM CG9286 DOWNSTREAM CG9297	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20957884	3R_20957884_SNP [dm3] 3R_25132162_SNP [dm6]	T	C	4.871e^-4	0.913	INTRON Bili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19385393	2L_19385393_SNP [dm3] 2L_19385393_SNP [dm6]	G	A	4.872e^-4	0.913	INTRON fon
X	3162591	X_3162591_SNP [dm3] X_3268558_SNP [dm6]	T	A	4.873e^-4	0.913	INTRON dnc
2R	15046200	2R_15046200_SNP [dm3] 2R_19158695_SNP [dm6]	C	G	4.884e^-4	0.913	INTRON ena	TF binding site mE1_TFBS_inv
3R	19138442	3R_19138442_SNP [dm3] 3R_23312720_SNP [dm6]	C	T	4.886e^-4	0.913	INTRON pnt
3L	19190975	3L_19190975_SNP [dm3] 3L_19197875_SNP [dm6]	A	C	4.890e^-4	0.913	INTRON fz2
2R	9233853	2R_9233853_SNP [dm3] 2R_13346348_SNP [dm6]	T	A	4.891e^-4	0.913	INTRON CR44206
2L	13683844	2L_13683844_SNP [dm3] 2L_13683844_SNP [dm6]	T	G	4.893e^-4	0.913	INTRON CG31814
2R	9459156	2R_9459156_SNP [dm3] 2R_13571651_SNP [dm6]	T	A	4.894e^-4	0.913	SYNONYMOUS_CODING CG42807	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16056796	2R_16056796_INS [dm3] 2R_20169291_INS [dm6]	G	GACTG	4.901e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12873795	3L_12873795_SNP [dm3] 3L_12880695_SNP [dm6]	T	C	4.905e^-4	0.913	INTERGENIC	TF binding site mE1_TFBS_inv
2R	20901092	2R_20901092_SNP [dm3] 2R_25013569_SNP [dm6]	C	T	4.910e^-4	0.913	INTRON uzip
3R	13657502	3R_13657502_SNP [dm3] 3R_17831780_SNP [dm6]	G	A	4.913e^-4	0.913	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	15755384	3L_15755384_SNP [dm3] 3L_15762284_SNP [dm6]	C	G	4.916e^-4	0.913	INTERGENIC
X	12021975	X_12021975_SNP [dm3] X_12127942_SNP [dm6]	G	A	4.916e^-4	0.913	UPSTREAM Ten-a INTRON Ten-a
X	4570546	X_4570546_SNP [dm3] X_4676513_SNP [dm6]	G	A	4.917e^-4	0.913	UTR_5_PRIME rap
3R	11579762	3R_11579762_SNP [dm3] 3R_15754040_SNP [dm6]	G	T	4.920e^-4	0.913	INTERGENIC
2L	1971997	2L_1971997_SNP [dm3] 2L_1971997_SNP [dm6]	T	C	4.922e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	19548129	2R_19548129_SNP [dm3] 2R_23660606_SNP [dm6]	G	C	4.937e^-4	0.913	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	27044280	3R_27044280_SNP [dm3] 3R_31218558_SNP [dm6]	A	G	4.939e^-4	0.913	UPSTREAM RNaseP:RNA DOWNSTREAM mir-4949 INTRON CG1746	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	18664429	2L_18664429_SNP [dm3] 2L_18664429_SNP [dm6]	C	G	4.941e^-4	0.913	UPSTREAM CR42490 INTERGENIC
2L	13749036	2L_13749036_SNP [dm3] 2L_13749036_SNP [dm6]	A	T	4.944e^-4	0.913	INTRON CR44846 & 1 other	TF binding site BDTNP1_TFBS_twi
2L	21802210	2L_21802210_SNP [dm3] 2L_21802210_SNP [dm6]	G	A	4.950e^-4	0.913	INTERGENIC
3L	6791087	3L_6791087_INS [dm3] 3L_6797987_INS [dm6]	T	TT	4.951e^-4	0.913	INTERGENIC
2R	13603317	2R_13603317_INS [dm3] 2R_17715812_INS [dm6]	G	GG	4.956e^-4	0.913	UTR_5_PRIME CG6424	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	21904830	2L_21904830_SNP [dm3] 2L_21904830_SNP [dm6]	G	T	4.961e^-4	0.913	INTERGENIC
3L	16934533	3L_16934533_SNP [dm3] 3L_16941433_SNP [dm6]	G	C	4.969e^-4	0.913	INTRON Cpr73D
3R	17296764	3R_17296764_MNP [dm3] 3R_21471042_MNP [dm6]	ACAA	TATT	4.974e^-4	0.913	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17296768	3R_17296768_INS [dm3] 3R_21471046_INS [dm6]	T	TGAA	4.974e^-4	0.913	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12376192	2L_12376192_SNP [dm3] 2L_12376192_SNP [dm6]	A	G	4.980e^-4	0.913	INTRON bru-2
2L	13740020	2L_13740020_SNP [dm3] 2L_13740020_SNP [dm6]	A	G	4.982e^-4	0.913	INTERGENIC
2L	4025532	2L_4025532_SNP [dm3] 2L_4025532_SNP [dm6]	G	T	4.984e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	12971390	2R_12971390_SNP [dm3] 2R_17083885_SNP [dm6]	A	G	4.987e^-4	0.913	INTRON CG30460	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1446740	3L_1446740_SNP [dm3] 3L_1446740_SNP [dm6]	C	A	4.989e^-4	0.913	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12887485	2L_12887485_SNP [dm3] 2L_12887485_SNP [dm6]	A	T	5.008e^-4	0.913	INTERGENIC
X	14043511	X_14043511_SNP [dm3] X_14149478_SNP [dm6]	A	C	5.014e^-4	0.913	INTERGENIC
3R	7359501	3R_7359501_SNP [dm3] 3R_11533779_SNP [dm6]	C	T	5.018e^-4	0.913	UTR_3_PRIME dpr4
2R	10000414	2R_10000414_SNP [dm3] 2R_14112909_SNP [dm6]	G	A	5.019e^-4	0.913	INTRON Prosap
3R	13265134	3R_13265134_SNP [dm3] 3R_17439412_SNP [dm6]	C	G	5.029e^-4	0.913	NON_SYNONYMOUS_CODING CG14331 INTRON CG5873
2L	12811911	2L_12811911_SNP [dm3] 2L_12811911_SNP [dm6]	A	G	5.037e^-4	0.913	INTERGENIC
2R	8368004	2R_8368004_SNP [dm3] 2R_12480499_SNP [dm6]	G	T	5.042e^-4	0.913	INTRON Dh44-R2
2R	18544951	2R_18544951_DEL [dm3] 2R_22657446_DEL [dm6]	ATCCAATA	A	5.059e^-4	0.913	UPSTREAM CG13510 & 4 others DOWNSTREAM CR45268 INTERGENIC
2L	1334288	2L_1334288_SNP [dm3] 2L_1334288_SNP [dm6]	C	T	5.062e^-4	0.913	NON_SYNONYMOUS_CODING CG5440
2L	18664358	2L_18664358_SNP [dm3] 2L_18664358_SNP [dm6]	A	G	5.064e^-4	0.913	UPSTREAM CR42490 INTERGENIC
2R	8605305	2R_8605305_SNP [dm3] 2R_12717800_SNP [dm6]	A	C	5.064e^-4	0.913	INTRON CG42663	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
2R	12763972	2R_12763972_SNP [dm3] 2R_16876467_SNP [dm6]	C	A	5.073e^-4	0.913	INTRON CG8910
2L	3466488	2L_3466488_SNP [dm3] 2L_3466488_SNP [dm6]	T	A	5.078e^-4	0.913	UPSTREAM msl-2 DOWNSTREAM CG3238 INTRON Pdsw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	21341047	3R_21341047_SNP [dm3] 3R_25515325_SNP [dm6]	A	G	5.079e^-4	0.913	UPSTREAM msi INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	12875518	3R_12875518_SNP [dm3] 3R_17049796_SNP [dm6]	T	C	5.086e^-4	0.913	INTERGENIC
3R	10013560	3R_10013560_SNP [dm3] 3R_14187838_SNP [dm6]	T	C	5.090e^-4	0.913	INTRON Dop1R1
3L	15617045	3L_15617045_DEL [dm3] 3L_15623945_DEL [dm6]	TTTTAGT	T	5.094e^-4	0.913	UTR_3_PRIME CG7372 INTRON comm3	TF binding site mE1_TFBS_Trl
3R	15245856	3R_15245856_SNP [dm3] 3R_19420134_SNP [dm6]	A	C	5.097e^-4	0.913	INTRON CG31221
2R	13696011	2R_13696011_SNP [dm3] 2R_17808506_SNP [dm6]	C	T	5.098e^-4	0.913	SYNONYMOUS_CODING grh	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo
2L	4649008	2L_4649008_SNP [dm3] 2L_4649008_SNP [dm6]	G	C	5.099e^-4	0.913	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16295434	3R_16295434_SNP [dm3] 3R_20469712_SNP [dm6]	C	T	5.102e^-4	0.913	INTRON Gfrl

By genomic position
Variant impact
Gene name

Eye_Area phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results