DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.592e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.03761

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.2572	0.0722
In_3R_Mo	4.6425	0.0981

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2195 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	16239657	2L_16239657_SNP [dm3] 2L_16239657_SNP [dm6]	C	T	1.346e^-6	0.429	INTRON CG42817
2R	10343861	2R_10343861_SNP [dm3] 2R_14456356_SNP [dm6]	T	G	1.573e^-6	0.429	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25317005	3R_25317005_MNP [dm3] 3R_29491283_MNP [dm6]	TTTA	GCAT	1.706e^-6	0.429	UTR_3_PRIME CG2006 UPSTREAM Spase12 DOWNSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	10578635	2R_10578635_SNP [dm3] 2R_14691130_SNP [dm6]	T	C	1.763e^-6	0.429	INTRON mspo
3L	7700032	3L_7700032_SNP [dm3] 3L_7706932_SNP [dm6]	G	T	1.780e^-6	0.429	INTRON CG32373 & 1 other
3R	25317012	3R_25317012_SNP [dm3] 3R_29491290_SNP [dm6]	T	A	1.872e^-6	0.429	UTR_3_PRIME CG2006 UPSTREAM Spase12 DOWNSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	18478788	3R_18478788_SNP [dm3] 3R_22653066_SNP [dm6]	G	A	2.299e^-6	0.429	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16239654	2L_16239654_SNP [dm3] 2L_16239654_SNP [dm6]	T	C	2.384e^-6	0.429	INTRON CG42817
3R	17823921	3R_17823921_SNP [dm3] 3R_21998199_SNP [dm6]	C	T	2.577e^-6	0.429	INTRON Eip93F
3R	22682213	3R_22682213_SNP [dm3] 3R_26856491_SNP [dm6]	A	T	2.803e^-6	0.429	INTRON Lerp
2L	15759696	2L_15759696_SNP [dm3] 2L_15759696_SNP [dm6]	G	A	2.850e^-6	0.429	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	18478815	3R_18478815_SNP [dm3] 3R_22653093_SNP [dm6]	T	C	2.899e^-6	0.429	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19439532	2R_19439532_SNP [dm3] 2R_23552009_SNP [dm6]	T	A	2.974e^-6	0.429	UPSTREAM pita INTRON pita & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	20404418	2L_20404418_SNP [dm3] 2L_20404418_SNP [dm6]	G	A	3.453e^-6	0.453	INTRON CG10947
3R	22682225	3R_22682225_SNP [dm3] 3R_26856503_SNP [dm6]	T	C	3.960e^-6	0.453	INTRON Lerp
2L	16239646	2L_16239646_SNP [dm3] 2L_16239646_SNP [dm6]	T	C	3.978e^-6	0.453	INTRON CG42817
2L	11010499	2L_11010499_SNP [dm3] 2L_11010499_SNP [dm6]	C	T	4.107e^-6	0.453	SYNONYMOUS_CODING Art8 UTR_3_PRIME Nup154 UPSTREAM dUTPase DOWNSTREAM Nup154	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	10344070	2R_10344070_SNP [dm3] 2R_14456565_SNP [dm6]	G	C	4.476e^-6	0.466	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22682208	3R_22682208_SNP [dm3] 3R_26856486_SNP [dm6]	A	C	4.949e^-6	0.488	INTRON Lerp
2R	17730878	2R_17730878_SNP [dm3] 2R_21843373_SNP [dm6]	G	C	5.381e^-6	0.504	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8137681	2R_8137681_SNP [dm3] 2R_12250176_SNP [dm6]	A	C	5.913e^-6	0.528	INTERGENIC
3L	10699904	3L_10699904_INS [dm3] 3L_10706804_INS [dm6]	A	AA	6.582e^-6	0.561	INTERGENIC
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	7.869e^-6	0.568	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11010372	2L_11010372_SNP [dm3] 2L_11010372_SNP [dm6]	G	T	8.375e^-6	0.568	SYNONYMOUS_CODING Art8 UTR_3_PRIME Nup154 UPSTREAM dUTPase DOWNSTREAM Nup154	TF binding site mE1_TFBS_sens
2R	10344098	2R_10344098_SNP [dm3] 2R_14456593_SNP [dm6]	A	C	8.674e^-6	0.568	INTRON Oaz	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7484520	3L_7484520_SNP [dm3] 3L_7491420_SNP [dm6]	T	A	8.736e^-6	0.568	UPSTREAM Cyp316a1 INTERGENIC
3R	22682233	3R_22682233_SNP [dm3] 3R_26856511_SNP [dm6]	G	A	9.037e^-6	0.568	INTRON Lerp
3L	7484492	3L_7484492_SNP [dm3] 3L_7491392_SNP [dm6]	G	T	9.060e^-6	0.568	UPSTREAM Cyp316a1 INTERGENIC
3R	21876295	3R_21876295_SNP [dm3] 3R_26050573_SNP [dm6]	T	C	9.662e^-6	0.568	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8203625	2L_8203625_SNP [dm3] 2L_8203625_SNP [dm6]	C	T	1.010e^-5	0.568	SYNONYMOUS_CODING SLC5A11 INTRON CR44119
2R	10344067	2R_10344067_SNP [dm3] 2R_14456562_SNP [dm6]	G	C	1.011e^-5	0.568	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21114770	X_21114770_SNP [dm3] X_21243743_SNP [dm6]	A	T	1.014e^-5	0.568	INTRON CG32521
3L	16867305	3L_16867305_SNP [dm3] 3L_16874205_SNP [dm6]	G	A	1.042e^-5	0.568	INTRON Lmpt
X	21116232	X_21116232_SNP [dm3] X_21245205_SNP [dm6]	T	C	1.062e^-5	0.568	INTRON CG32521
2R	10344071	2R_10344071_INS [dm3] 2R_14456566_INS [dm6]	A	ACT	1.137e^-5	0.568	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11461243	2R_11461243_SNP [dm3] 2R_15573738_SNP [dm6]	T	A	1.142e^-5	0.568	START_GAINED CG8204 UTR_5_PRIME CG8204 DOWNSTREAM CG30466	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	10344115	2R_10344115_SNP [dm3] 2R_14456610_SNP [dm6]	C	G	1.148e^-5	0.568	INTRON Oaz	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13549586	3L_13549586_SNP [dm3] 3L_13556486_SNP [dm6]	C	A	1.152e^-5	0.568	INTRON bru-3
2R	8137678	2R_8137678_SNP [dm3] 2R_12250173_SNP [dm6]	T	C	1.226e^-5	0.578	INTERGENIC
2R	8137710	2R_8137710_SNP [dm3] 2R_12250205_SNP [dm6]	C	A	1.279e^-5	0.578	INTERGENIC
2L	2782693	2L_2782693_SNP [dm3] 2L_2782693_SNP [dm6]	A	G	1.321e^-5	0.578	UTR_3_PRIME Syt1
2L	11219826	2L_11219826_SNP [dm3] 2L_11219826_SNP [dm6]	A	C	1.322e^-5	0.578	INTRON ab	TF binding site BDTNP1_TFBS_da
3L	7484565	3L_7484565_SNP [dm3] 3L_7491465_SNP [dm6]	G	C	1.325e^-5	0.578	UPSTREAM Cyp316a1 INTERGENIC
3R	23513340	3R_23513340_SNP [dm3] 3R_27687618_SNP [dm6]	C	T	1.381e^-5	0.586	NON_SYNONYMOUS_CODING CG31055 INTRON CG12880	TF binding site mE1_TFBS_chinmo
2R	11822982	2R_11822982_SNP [dm3] 2R_15935477_SNP [dm6]	A	T	1.406e^-5	0.586	SYNONYMOUS_CODING CG8297 UPSTREAM Iap2 DOWNSTREAM Mlf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	27248891	3R_27248891_SNP [dm3] 3R_31423169_SNP [dm6]	G	T	1.565e^-5	0.587	INTRON Gprk2
3L	14949888	3L_14949888_SNP [dm3] 3L_14956788_SNP [dm6]	C	T	1.579e^-5	0.587	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	16547522	2L_16547522_DEL [dm3] 2L_16547522_DEL [dm6]	AA	A	1.677e^-5	0.587	INTRON CG42389
3L	7484493	3L_7484493_SNP [dm3] 3L_7491393_SNP [dm6]	C	T	1.748e^-5	0.587	UPSTREAM Cyp316a1 INTERGENIC
3L	16245081	3L_16245081_SNP [dm3] 3L_16251981_SNP [dm6]	G	T	1.748e^-5	0.587	SYNONYMOUS_CODING CG13055	TF binding site mE1_TFBS_chinmo
2L	7934932	2L_7934932_SNP [dm3] 2L_7934932_SNP [dm6]	A	C	1.769e^-5	0.587	INTRON Snoo
3R	24727035	3R_24727035_SNP [dm3] 3R_28901313_SNP [dm6]	C	T	1.780e^-5	0.587	INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17926743	3L_17926743_INS [dm3] 3L_17933643_INS [dm6]	A	ACA	1.811e^-5	0.587	UPSTREAM CG43173 & 1 other INTERGENIC
X	19870082	X_19870082_DEL [dm3] X_19976049_DEL [dm6]	TTTGT	T	1.831e^-5	0.587	INTERGENIC
2L	15090507	2L_15090507_SNP [dm3] 2L_15090507_SNP [dm6]	T	C	1.853e^-5	0.587	INTRON CG15270
3L	7484626	3L_7484626_SNP [dm3] 3L_7491526_SNP [dm6]	G	T	1.867e^-5	0.587	UPSTREAM Cyp316a1 INTERGENIC
2R	10346354	2R_10346354_SNP [dm3] 2R_14458849_SNP [dm6]	A	G	1.882e^-5	0.587	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	19869871	X_19869871_SNP [dm3] X_19975838_SNP [dm6]	C	T	1.910e^-5	0.587	INTERGENIC
2R	8136809	2R_8136809_SNP [dm3] 2R_12249304_SNP [dm6]	G	T	1.913e^-5	0.587	INTERGENIC
2L	9487588	2L_9487588_SNP [dm3] 2L_9487588_SNP [dm6]	A	G	1.927e^-5	0.587	INTERGENIC
2R	10347193	2R_10347193_SNP [dm3] 2R_14459688_SNP [dm6]	T	C	1.932e^-5	0.587	INTRON Oaz
2L	7586241	2L_7586241_DEL [dm3] 2L_7586241_DEL [dm6]	GG	G	1.942e^-5	0.587	INTERGENIC
2L	19027934	2L_19027934_SNP [dm3] 2L_19027934_SNP [dm6]	T	C	1.995e^-5	0.594	UTR_5_PRIME Side
2R	17730873	2R_17730873_SNP [dm3] 2R_21843368_SNP [dm6]	C	A	2.064e^-5	0.603	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	2735393	2L_2735393_SNP [dm3] 2L_2735393_SNP [dm6]	C	A	2.090e^-5	0.603	UPSTREAM CG31689 INTRON CG31689
2R	11730831	2R_11730831_SNP [dm3] 2R_15843326_SNP [dm6]	C	A	2.127e^-5	0.604	UTR_3_PRIME CG8249 DOWNSTREAM CG8249 INTRON tun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	718515	3L_718515_SNP [dm3] 3L_718515_SNP [dm6]	A	C	2.200e^-5	0.61	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3562242	3L_3562242_SNP [dm3] 3L_3562242_SNP [dm6]	C	A	2.222e^-5	0.61	INTRON Eip63E
X	20218269	X_20218269_SNP [dm3] X_20347242_SNP [dm6]	C	A	2.272e^-5	0.61	INTERGENIC
2R	10344131	2R_10344131_SNP [dm3] 2R_14456626_SNP [dm6]	A	G	2.276e^-5	0.61	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16961944	2R_16961944_DEL [dm3] 2R_21074439_DEL [dm6]	TAAATA	T	2.331e^-5	0.615	INTRON Treh
X	21116655	X_21116655_SNP [dm3] X_21245628_SNP [dm6]	T	A	2.386e^-5	0.616	INTRON CG32521
3R	9960186	3R_9960186_SNP [dm3] 3R_14134464_SNP [dm6]	C	A	2.399e^-5	0.616	INTERGENIC
2R	17078601	2R_17078601_SNP [dm3] 2R_21191096_SNP [dm6]	A	G	2.506e^-5	0.625	NON_SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6381844	X_6381844_SNP [dm3] X_6487811_SNP [dm6]	C	A	2.511e^-5	0.625	INTRON CG42340
2L	18885261	2L_18885261_SNP [dm3] 2L_18885261_SNP [dm6]	C	G	2.551e^-5	0.625	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	10344121	2R_10344121_SNP [dm3] 2R_14456616_SNP [dm6]	T	C	2.633e^-5	0.625	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26042451	3R_26042451_SNP [dm3] 3R_30216729_SNP [dm6]	A	T	2.643e^-5	0.625	INTRON CecC
2R	17078585	2R_17078585_SNP [dm3] 2R_21191080_SNP [dm6]	A	G	2.673e^-5	0.625	NON_SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	3532145	2R_3532145_SNP [dm3] 2R_7644640_SNP [dm6]	T	A	2.685e^-5	0.625	SYNONYMOUS_CODING CG43340 INTRON CG43340
2R	13506075	2R_13506075_SNP [dm3] 2R_17618570_SNP [dm6]	T	G	2.701e^-5	0.625	UPSTREAM CG44403 INTRON CG10936
2R	10503570	2R_10503570_SNP [dm3] 2R_14616065_SNP [dm6]	A	C	2.762e^-5	0.63	NON_SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2	TF binding site mE1_TFBS_HSA
3R	5899901	3R_5899901_SNP [dm3] 3R_10074179_SNP [dm6]	A	C	2.790e^-5	0.63	SYNONYMOUS_CODING CG5361 DOWNSTREAM nerfin-2
2R	8137206	2R_8137206_SNP [dm3] 2R_12249701_SNP [dm6]	T	C	2.907e^-5	0.649	INTERGENIC
X	19870093	X_19870093_SNP [dm3] X_19976060_SNP [dm6]	A	T	2.991e^-5	0.66	INTERGENIC
2L	19209731	2L_19209731_SNP [dm3] 2L_19209731_SNP [dm6]	T	C	3.068e^-5	0.66	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3558315	3L_3558315_SNP [dm3] 3L_3558315_SNP [dm6]	T	C	3.178e^-5	0.66	INTRON Eip63E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15884106	2R_15884106_SNP [dm3] 2R_19996601_SNP [dm6]	G	C	3.225e^-5	0.66	INTERGENIC
X	19250476	X_19250476_SNP [dm3] X_19356443_SNP [dm6]	A	T	3.274e^-5	0.66	INTRON kek5
3R	10270734	3R_10270734_SNP [dm3] 3R_14445012_SNP [dm6]	C	T	3.340e^-5	0.66	INTRON cv-c	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3553253	3L_3553253_SNP [dm3] 3L_3553253_SNP [dm6]	T	G	3.362e^-5	0.66	INTRON Eip63E
X	20215704	X_20215704_SNP [dm3] X_20344677_SNP [dm6]	G	A	3.409e^-5	0.66	INTERGENIC
2R	10345162	2R_10345162_SNP [dm3] 2R_14457657_SNP [dm6]	C	T	3.482e^-5	0.66	UPSTREAM Oaz INTRON Oaz	TF binding site mE1_TFBS_HSA
3L	1362124	3L_1362124_SNP [dm3] 3L_1362124_SNP [dm6]	A	G	3.502e^-5	0.66	INTRON Ptp61F
X	14694862	X_14694862_SNP [dm3] X_14800829_SNP [dm6]	C	T	3.617e^-5	0.66	SYNONYMOUS_CODING rut
X	6381838	X_6381838_SNP [dm3] X_6487805_SNP [dm6]	C	A	3.641e^-5	0.66	INTRON CG42340
3R	5121979	3R_5121979_SNP [dm3] 3R_9296257_SNP [dm6]	T	G	3.646e^-5	0.66	INTRON CG8861
2R	15267497	2R_15267497_SNP [dm3] 2R_19379992_SNP [dm6]	G	A	3.680e^-5	0.66	SYNONYMOUS_CODING CG10062 UPSTREAM CG10073
2R	12828595	2R_12828595_SNP [dm3] 2R_16941090_SNP [dm6]	T	G	3.682e^-5	0.66	INTRON Pkc53E
2R	20202142	2R_20202142_SNP [dm3] 2R_24314619_SNP [dm6]	A	C	3.706e^-5	0.66	INTERGENIC
2R	10344148	2R_10344148_SNP [dm3] 2R_14456643_SNP [dm6]	C	T	3.723e^-5	0.66	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21116656	X_21116656_SNP [dm3] X_21245629_SNP [dm6]	G	A	3.756e^-5	0.66	INTRON CG32521
3R	10625180	3R_10625180_DEL [dm3] 3R_14799458_DEL [dm6]	AGC	TT	3.812e^-5	0.66	DOWNSTREAM CG14855 INTRON CG14856	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13781818	2R_13781818_SNP [dm3] 2R_17894313_SNP [dm6]	A	G	3.814e^-5	0.66	SYNONYMOUS_CODING CG14492 UPSTREAM CG14491 INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	8413150	2R_8413150_SNP [dm3] 2R_12525645_SNP [dm6]	A	G	3.818e^-5	0.66	INTERGENIC
3L	8532579	3L_8532579_SNP [dm3] 3L_8539479_SNP [dm6]	T	A	3.831e^-5	0.66	INTERGENIC
3L	13549577	3L_13549577_SNP [dm3] 3L_13556477_SNP [dm6]	G	A	3.896e^-5	0.66	INTRON bru-3
X	20262267	X_20262267_SNP [dm3] X_20391240_SNP [dm6]	A	G	3.933e^-5	0.66	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11219801	2L_11219801_SNP [dm3] 2L_11219801_SNP [dm6]	T	A	3.965e^-5	0.66	INTRON ab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	15483333	3L_15483333_SNP [dm3] 3L_15490233_SNP [dm6]	T	C	3.970e^-5	0.66	INTERGENIC
2L	8203792	2L_8203792_SNP [dm3] 2L_8203792_SNP [dm6]	G	A	3.975e^-5	0.66	INTRON CR44119 & 1 other
2L	8203812	2L_8203812_SNP [dm3] 2L_8203812_SNP [dm6]	C	T	3.989e^-5	0.66	INTRON CR44119 & 1 other
2R	16361025	2R_16361025_SNP [dm3] 2R_20473520_SNP [dm6]	A	C	3.999e^-5	0.66	INTRON CG12484
3L	8547910	3L_8547910_SNP [dm3] 3L_8554810_SNP [dm6]	T	C	4.013e^-5	0.66	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10345518	2R_10345518_SNP [dm3] 2R_14458013_SNP [dm6]	C	A	4.118e^-5	0.671	UPSTREAM Oaz INTRON Oaz	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	27086152	3R_27086152_SNP [dm3] 3R_31260430_SNP [dm6]	A	T	4.170e^-5	0.671	NON_SYNONYMOUS_CODING CG18672 DOWNSTREAM CG3669
2R	10345424	2R_10345424_SNP [dm3] 2R_14457919_SNP [dm6]	C	T	4.203e^-5	0.671	UPSTREAM Oaz INTRON Oaz	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	15483312	3L_15483312_SNP [dm3] 3L_15490212_SNP [dm6]	A	G	4.223e^-5	0.671	INTERGENIC
X	12144915	X_12144915_SNP [dm3] X_12250882_SNP [dm6]	A	T	4.276e^-5	0.674	INTRON Ten-a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	7001813	3L_7001813_SNP [dm3] 3L_7008713_SNP [dm6]	T	C	4.331e^-5	0.675	INTRON Mp
X	20936848	X_20936848_SNP [dm3] X_21065821_SNP [dm6]	T	A	4.360e^-5	0.675	INTRON bves & 1 other
2R	9457779	2R_9457779_SNP [dm3] 2R_13570274_SNP [dm6]	A	T	4.437e^-5	0.678	DOWNSTREAM CG42807 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2R	19438651	2R_19438651_SNP [dm3] 2R_23551128_SNP [dm6]	A	C	4.451e^-5	0.678	UTR_5_PRIME pita UPSTREAM Dcp-1 INTRON pita	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1689564	3L_1689564_SNP [dm3] 3L_1689564_SNP [dm6]	A	G	4.522e^-5	0.684	UTR_5_PRIME CG7991 INTRON CG7991
2R	16044740	2R_16044740_INS [dm3] 2R_20157235_INS [dm6]	A	ATTA	4.605e^-5	0.691	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9960183	3R_9960183_SNP [dm3] 3R_14134461_SNP [dm6]	G	T	4.717e^-5	0.693	INTERGENIC
3L	7484642	3L_7484642_SNP [dm3] 3L_7491542_SNP [dm6]	T	C	4.727e^-5	0.693	UPSTREAM Cyp316a1 INTERGENIC
3R	9960187	3R_9960187_SNP [dm3] 3R_14134465_SNP [dm6]	C	T	4.737e^-5	0.693	INTERGENIC
3L	3552073	3L_3552073_SNP [dm3] 3L_3552073_SNP [dm6]	A	T	4.843e^-5	0.693	INTRON Eip63E
2R	12425650	2R_12425650_DEL [dm3] 2R_16538145_DEL [dm6]	TATGCACTTATTGCATGAAT...	T	4.900e^-5	0.693	INTERGENIC
2L	4697388	2L_4697388_SNP [dm3] 2L_4697388_SNP [dm6]	C	A	4.916e^-5	0.693	INTRON CG34351
3L	2485828	3L_2485828_SNP [dm3] 3L_2485828_SNP [dm6]	T	A	4.943e^-5	0.693	INTRON CG45186	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2R	2601238	2R_2601238_SNP [dm3] 2R_6713733_SNP [dm6]	T	C	5.019e^-5	0.693	INTRON CG3409 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1098649	3L_1098649_SNP [dm3] 3L_1098649_SNP [dm6]	G	T	5.040e^-5	0.693	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	18434154	X_18434154_SNP [dm3] X_18540121_SNP [dm6]	C	G	5.107e^-5	0.693	INTRON Bx
3R	11259752	3R_11259752_INS [dm3] 3R_15434030_INS [dm6]	A	AACTA	5.112e^-5	0.693	INTRON CG6118
X	21116859	X_21116859_SNP [dm3] X_21245832_SNP [dm6]	G	A	5.125e^-5	0.693	INTRON CG32521
2R	10346210	2R_10346210_SNP [dm3] 2R_14458705_SNP [dm6]	G	T	5.126e^-5	0.693	UTR_5_PRIME Oaz INTRON Oaz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	8532578	3L_8532578_SNP [dm3] 3L_8539478_SNP [dm6]	A	C	5.141e^-5	0.693	INTERGENIC
X	751068	X_751068_SNP [dm3] X_857035_SNP [dm6]	T	A	5.246e^-5	0.699	INTRON CG43867	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1542672	2L_1542672_SNP [dm3] 2L_1542672_SNP [dm6]	C	T	5.309e^-5	0.699	INTERGENIC
3R	23519319	3R_23519319_SNP [dm3] 3R_27693597_SNP [dm6]	G	A	5.313e^-5	0.699	UPSTREAM CG43319 DOWNSTREAM CG12880 INTERGENIC
2R	13398853	2R_13398853_SNP [dm3] 2R_17511348_SNP [dm6]	A	C	5.334e^-5	0.699	UTR_3_PRIME CG34193 UPSTREAM CG4847 DOWNSTREAM CG34193
3R	14616564	3R_14616564_SNP [dm3] 3R_18790842_SNP [dm6]	T	C	5.438e^-5	0.706	INTRON CG7720
X	20215452	X_20215452_INS [dm3] X_20344425_INS [dm6]	AC	TTATGCCG	5.487e^-5	0.706	INTERGENIC
3L	1108132	3L_1108132_SNP [dm3] 3L_1108132_SNP [dm6]	G	T	5.549e^-5	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13549841	3L_13549841_SNP [dm3] 3L_13556741_SNP [dm6]	A	G	5.568e^-5	0.706	INTRON bru-3
3L	15483234	3L_15483234_SNP [dm3] 3L_15490134_SNP [dm6]	A	C	5.575e^-5	0.706	INTERGENIC
2L	3126404	2L_3126404_SNP [dm3] 2L_3126404_SNP [dm6]	G	A	5.664e^-5	0.709	NON_SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	7935558	2L_7935558_SNP [dm3] 2L_7935558_SNP [dm6]	G	T	5.745e^-5	0.709	INTRON Snoo
2L	4697386	2L_4697386_SNP [dm3] 2L_4697386_SNP [dm6]	C	T	5.751e^-5	0.709	INTRON CG34351
2R	10503577	2R_10503577_SNP [dm3] 2R_14616072_SNP [dm6]	C	T	5.752e^-5	0.709	SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2	TF binding site mE1_TFBS_HSA
3R	25912874	3R_25912874_SNP [dm3] 3R_30087152_SNP [dm6]	C	A	5.851e^-5	0.717	INTRON sima
2L	7586313	2L_7586313_SNP [dm3] 2L_7586313_SNP [dm6]	G	C	5.952e^-5	0.722	INTERGENIC
2R	10343192	2R_10343192_SNP [dm3] 2R_14455687_SNP [dm6]	T	C	5.968e^-5	0.722	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	13908780	2L_13908780_SNP [dm3] 2L_13908780_SNP [dm6]	T	A	6.042e^-5	0.723	SYNONYMOUS_CODING Ance UPSTREAM Ance-2	TF binding site mE1_TFBS_cad
3L	390335	3L_390335_SNP [dm3] 3L_390335_SNP [dm6]	C	T	6.160e^-5	0.723	INTRON trh
2L	18678385	2L_18678385_SNP [dm3] 2L_18678385_SNP [dm6]	G	A	6.175e^-5	0.723	UPSTREAM CG31751 INTRON CG31751
2L	5901184	2L_5901184_SNP [dm3] 2L_5901184_SNP [dm6]	G	T	6.263e^-5	0.723	UPSTREAM CR44579 INTERGENIC
2R	17725920	2R_17725920_SNP [dm3] 2R_21838415_SNP [dm6]	C	T	6.321e^-5	0.723	SYNONYMOUS_CODING CG4372
X	21233278	X_21233278_SNP [dm3] X_21362251_SNP [dm6]	G	A	6.352e^-5	0.723	UPSTREAM waw & 1 other DOWNSTREAM Sep1 INTERGENIC
X	6381835	X_6381835_SNP [dm3] X_6487802_SNP [dm6]	T	A	6.421e^-5	0.723	INTRON CG42340
3L	15483232	3L_15483232_SNP [dm3] 3L_15490132_SNP [dm6]	A	T	6.511e^-5	0.723	INTERGENIC
2L	3126389	2L_3126389_SNP [dm3] 2L_3126389_SNP [dm6]	C	T	6.541e^-5	0.723	NON_SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	10344128	2R_10344128_SNP [dm3] 2R_14456623_SNP [dm6]	G	A	6.586e^-5	0.723	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20819924	3R_20819924_SNP [dm3] 3R_24994202_SNP [dm6]	C	A	6.661e^-5	0.723	INTRON tnc
3R	11259783	3R_11259783_INS [dm3] 3R_15434061_INS [dm6]	A	AGA	6.721e^-5	0.723	INTRON CG6118
3R	26977985	3R_26977985_SNP [dm3] 3R_31152263_SNP [dm6]	T	C	6.738e^-5	0.723	INTRON Gycbeta100B
3L	23586018	3L_23586018_SNP [dm3] 3L_23592918_SNP [dm6]	T	G	6.747e^-5	0.723	INTRON AGO3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	27265929	3R_27265929_SNP [dm3] 3R_31440207_SNP [dm6]	C	G	6.759e^-5	0.723	INTRON Gprk2
3L	13553816	3L_13553816_DEL [dm3] 3L_13560716_DEL [dm6]	GTCGACGTAGCGACACT...	G	6.889e^-5	0.723	INTRON bru-3
3L	10458621	3L_10458621_SNP [dm3] 3L_10465521_SNP [dm6]	T	C	6.919e^-5	0.723	UPSTREAM S-Lap3 DOWNSTREAM CG32061 INTRON S-Lap3
2L	21802210	2L_21802210_SNP [dm3] 2L_21802210_SNP [dm6]	G	A	7.003e^-5	0.723	INTERGENIC
X	21233362	X_21233362_SNP [dm3] X_21362335_SNP [dm6]	C	T	7.049e^-5	0.723	UPSTREAM waw & 1 other DOWNSTREAM Sep1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	16044742	2R_16044742_MNP [dm3] 2R_20157237_MNP [dm6]	GCAT	ATGC	7.075e^-5	0.723	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26042450	3R_26042450_SNP [dm3] 3R_30216728_SNP [dm6]	T	A	7.124e^-5	0.723	INTRON CecC
3R	21877335	3R_21877335_SNP [dm3] 3R_26051613_SNP [dm6]	C	T	7.131e^-5	0.723	SYNONYMOUS_CODING Exo84	TF binding site BDTNP1_TFBS_prd
3R	21877368	3R_21877368_SNP [dm3] 3R_26051646_SNP [dm6]	T	C	7.131e^-5	0.723	SYNONYMOUS_CODING Exo84	TF binding site BDTNP1_TFBS_prd
3L	7358531	3L_7358531_SNP [dm3] 3L_7365431_SNP [dm6]	C	T	7.165e^-5	0.723	NON_SYNONYMOUS_CODING Sh3beta INTRON Sh3beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19869903	X_19869903_DEL [dm3] X_19975870_DEL [dm6]	TTAGGAAGAAGTATCCAGAG...	T	7.233e^-5	0.723	INTERGENIC
2L	21851919	2L_21851919_INS [dm3] 2L_21851919_INS [dm6]	T	TTCT	7.233e^-5	0.723	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	9083658	X_9083658_SNP [dm3] X_9189625_SNP [dm6]	T	C	7.248e^-5	0.723	SYNONYMOUS_CODING CG12115 DOWNSTREAM mei-P26
3L	3553432	3L_3553432_SNP [dm3] 3L_3553432_SNP [dm6]	G	A	7.277e^-5	0.723	INTRON Eip63E
X	19873187	X_19873187_INS [dm3] X_19979154_INS [dm6]	A	ATTTTCTATTAAGAGATAT...	7.369e^-5	0.723	INTERGENIC
2R	11530467	2R_11530467_SNP [dm3] 2R_15642962_SNP [dm6]	T	A	7.382e^-5	0.723	INTRON CG42524
3L	18998410	3L_18998410_SNP [dm3] 3L_19005310_SNP [dm6]	C	G	7.393e^-5	0.723	NON_SYNONYMOUS_CODING nkd UTR_3_PRIME nkd	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	16989113	3R_16989113_SNP [dm3] 3R_21163391_SNP [dm6]	A	G	7.397e^-5	0.723	UPSTREAM CG5810 INTRON SNF4Agamma
X	3211248	X_3211248_SNP [dm3] X_3317215_SNP [dm6]	C	A	7.400e^-5	0.723	UPSTREAM CG10793 INTRON dnc & 1 other
X	18406897	X_18406897_SNP [dm3] X_18512864_SNP [dm6]	T	C	7.402e^-5	0.723	UTR_3_PRIME CG6470 UPSTREAM Ggt-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11730628	2R_11730628_SNP [dm3] 2R_15843123_SNP [dm6]	G	T	7.405e^-5	0.723	UTR_3_PRIME CG8249 DOWNSTREAM CG8249 INTRON tun	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	743426	3L_743426_SNP [dm3] 3L_743426_SNP [dm6]	C	T	7.418e^-5	0.723	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	1797238	3R_1797238_SNP [dm3] 3R_5971516_SNP [dm6]	C	T	7.431e^-5	0.723	DOWNSTREAM CR44926 & 1 other INTERGENIC
3R	21492001	3R_21492001_SNP [dm3] 3R_25666279_SNP [dm6]	G	A	7.443e^-5	0.723	DOWNSTREAM RASSF8 INTRON Lgr3	TF binding site BDTNP1_TFBS_twi
3L	10611706	3L_10611706_SNP [dm3] 3L_10618606_SNP [dm6]	G	T	7.659e^-5	0.732	INTERGENIC
2L	6019547	2L_6019547_SNP [dm3] 2L_6019547_SNP [dm6]	G	T	7.681e^-5	0.732	UPSTREAM H2.0 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19873199	X_19873199_INS [dm3] X_19979166_INS [dm6]	T	TCTGTAGTT	7.688e^-5	0.732	INTERGENIC
3L	3553296	3L_3553296_INS [dm3] 3L_3553296_INS [dm6]	C	CGCTTCAATTTTTCGCACAC...	7.744e^-5	0.732	INTRON Eip63E
3L	7007716	3L_7007716_SNP [dm3] 3L_7014616_SNP [dm6]	G	C	7.756e^-5	0.732	UTR_5_PRIME Mp INTRON Mp
3R	14038121	3R_14038121_SNP [dm3] 3R_18212399_SNP [dm6]	C	G	7.807e^-5	0.732	INTRON CG7985
2L	5796892	2L_5796892_SNP [dm3] 2L_5796892_SNP [dm6]	C	A	7.847e^-5	0.732	INTRON CG9171
2R	10581745	2R_10581745_SNP [dm3] 2R_14694240_SNP [dm6]	A	G	7.849e^-5	0.732	INTRON mspo
3L	355515	3L_355515_SNP [dm3] 3L_355515_SNP [dm6]	C	T	8.010e^-5	0.743	SYNONYMOUS_CODING Ptpmeg UPSTREAM CG1231
X	17078271	X_17078271_SNP [dm3] X_17184238_SNP [dm6]	T	C	8.146e^-5	0.745	UPSTREAM CR44026 INTRON baz
3L	3562041	3L_3562041_SNP [dm3] 3L_3562041_SNP [dm6]	G	T	8.186e^-5	0.745	INTRON Eip63E
2L	22667064	2L_22667064_SNP [dm3] 2L_22774332_SNP [dm6]	A	G	8.192e^-5	0.745	INTERGENIC
3R	10969892	3R_10969892_SNP [dm3] 3R_15144170_SNP [dm6]	A	G	8.209e^-5	0.745	INTRON GlyS	TF binding site mE1_TFBS_cad
3R	15177223	3R_15177223_SNP [dm3] 3R_19351501_SNP [dm6]	C	A	8.228e^-5	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	18678098	2L_18678098_INS [dm3] 2L_18678098_INS [dm6]	C	CACTGCACCATGGAGCTCAC...	8.455e^-5	0.754	UPSTREAM CG31751 INTRON CG31751	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11573868	2R_11573868_SNP [dm3] 2R_15686363_SNP [dm6]	C	T	8.479e^-5	0.754	SYNONYMOUS_CODING Ranbp11 UPSTREAM CG30082	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3R	26132112	3R_26132112_SNP [dm3] 3R_30306390_SNP [dm6]	C	T	8.504e^-5	0.754	SYNONYMOUS_CODING CG34300 INTRON hdc
3L	10604687	3L_10604687_SNP [dm3] 3L_10611587_SNP [dm6]	G	A	8.518e^-5	0.754	INTERGENIC
2R	2605312	2R_2605312_SNP [dm3] 2R_6717807_SNP [dm6]	T	G	8.601e^-5	0.754	UPSTREAM Zip42C.1 DOWNSTREAM Zip42C.2 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7366142	3R_7366142_SNP [dm3] 3R_11540420_SNP [dm6]	T	G	8.615e^-5	0.754	INTRON dpr4
X	20262315	X_20262315_DEL [dm3] X_20391288_DEL [dm6]	TGATGTTTCTTAT...	T	8.616e^-5	0.754	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10604623	3L_10604623_SNP [dm3] 3L_10611523_SNP [dm6]	G	A	8.685e^-5	0.754	INTERGENIC
3L	10604723	3L_10604723_SNP [dm3] 3L_10611623_SNP [dm6]	C	A	8.693e^-5	0.754	INTERGENIC
3R	25912875	3R_25912875_SNP [dm3] 3R_30087153_SNP [dm6]	T	C	8.755e^-5	0.754	INTRON sima
X	18406863	X_18406863_SNP [dm3] X_18512830_SNP [dm6]	T	A	8.808e^-5	0.754	UTR_3_PRIME CG6470 UPSTREAM Ggt-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5906488	3R_5906488_SNP [dm3] 3R_10080766_SNP [dm6]	A	T	8.856e^-5	0.754	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3R	14616571	3R_14616571_SNP [dm3] 3R_18790849_SNP [dm6]	T	C	8.883e^-5	0.754	INTRON CG7720
2R	16849648	2R_16849648_SNP [dm3] 2R_20962143_SNP [dm6]	C	A	8.957e^-5	0.754	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10915855	3R_10915855_SNP [dm3] 3R_15090133_SNP [dm6]	G	C	8.959e^-5	0.754	INTRON CG6966	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	19873194	X_19873194_INS [dm3] X_19979161_INS [dm6]	T	TT	8.974e^-5	0.754	INTERGENIC
3R	13600041	3R_13600041_SNP [dm3] 3R_17774319_SNP [dm6]	C	T	9.127e^-5	0.764	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3L	7831827	3L_7831827_SNP [dm3] 3L_7838727_SNP [dm6]	G	A	9.182e^-5	0.765	INTRON Pdp1	regulatory region REDfly_CRMs
X	20215420	X_20215420_SNP [dm3] X_20344393_SNP [dm6]	A	G	9.254e^-5	0.765	INTERGENIC
2R	14242740	2R_14242740_INS [dm3] 2R_18355235_INS [dm6]	A	AA	9.263e^-5	0.765	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	10344155	2R_10344155_SNP [dm3] 2R_14456650_SNP [dm6]	C	G	9.413e^-5	0.768	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26982878	3R_26982878_SNP [dm3] 3R_31157156_SNP [dm6]	T	C	9.470e^-5	0.768	DOWNSTREAM stops INTRON Gycbeta100B
X	9390924	X_9390924_SNP [dm3] X_9496891_SNP [dm6]	G	A	9.567e^-5	0.768	UPSTREAM mgl INTRON mgl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	9390938	X_9390938_SNP [dm3] X_9496905_SNP [dm6]	A	T	9.567e^-5	0.768	UPSTREAM mgl INTRON mgl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	15618926	3L_15618926_SNP [dm3] 3L_15625826_SNP [dm6]	G	T	9.629e^-5	0.768	INTRON comm3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	16547384	2L_16547384_SNP [dm3] 2L_16547384_SNP [dm6]	T	C	9.658e^-5	0.768	INTRON CG42389
2R	8413160	2R_8413160_SNP [dm3] 2R_12525655_SNP [dm6]	T	C	9.706e^-5	0.768	INTERGENIC
2R	8413164	2R_8413164_SNP [dm3] 2R_12525659_SNP [dm6]	A	T	9.706e^-5	0.768	INTERGENIC
2R	19409961	2R_19409961_SNP [dm3] 2R_23522438_SNP [dm6]	C	A	9.710e^-5	0.768	INTRON RabX1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	7001742	3L_7001742_SNP [dm3] 3L_7008642_SNP [dm6]	C	T	9.713e^-5	0.768	INTRON Mp
X	21233444	X_21233444_SNP [dm3] X_21362417_SNP [dm6]	T	C	9.745e^-5	0.768	UPSTREAM waw & 1 other DOWNSTREAM Sep1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10611609	3L_10611609_SNP [dm3] 3L_10618509_SNP [dm6]	A	T	9.839e^-5	0.768	INTERGENIC
X	19872480	X_19872480_SNP [dm3] X_19978447_SNP [dm6]	A	T	9.847e^-5	0.768	INTERGENIC
X	19873291	X_19873291_INS [dm3] X_19979258_INS [dm6]	T	TTGATGT	9.872e^-5	0.768	INTERGENIC
X	20262270	X_20262270_INS [dm3] X_20391243_INS [dm6]	A	ATCAATAATAATTCAA...	9.974e^-5	0.773	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2782662	2L_2782662_SNP [dm3] 2L_2782662_SNP [dm6]	A	T	1.007e^-4	0.775	UTR_3_PRIME Syt1
2L	21802262	2L_21802262_SNP [dm3] 2L_21802262_SNP [dm6]	A	G	1.025e^-4	0.775	INTERGENIC
3R	1790810	3R_1790810_SNP [dm3] 3R_5965088_SNP [dm6]	T	C	1.025e^-4	0.775	UPSTREAM CR44925 INTERGENIC
3L	1108128	3L_1108128_SNP [dm3] 3L_1108128_SNP [dm6]	G	T	1.028e^-4	0.775	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	4093930	X_4093930_SNP [dm3] X_4199897_SNP [dm6]	T	C	1.030e^-4	0.775	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	21929885	2L_21929885_SNP [dm3] 2L_21929885_SNP [dm6]	T	A	1.036e^-4	0.775	UPSTREAM CR45334 INTERGENIC
2L	18769251	2L_18769251_SNP [dm3] 2L_18769251_SNP [dm6]	T	G	1.037e^-4	0.775	INTRON ham
2L	16619019	2L_16619019_SNP [dm3] 2L_16619019_SNP [dm6]	T	A	1.040e^-4	0.775	INTRON CG42389	TF binding site BDTNP1_TFBS_dl
2R	10344264	2R_10344264_SNP [dm3] 2R_14456759_SNP [dm6]	A	G	1.043e^-4	0.775	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9942004	2L_9942004_SNP [dm3] 2L_9942004_SNP [dm6]	C	A	1.043e^-4	0.775	SYNONYMOUS_CODING CG5853 UTR_3_PRIME CG4619	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7890935	3L_7890935_SNP [dm3] 3L_7897835_SNP [dm6]	C	T	1.061e^-4	0.775	SYNONYMOUS_CODING pbl
3R	18479994	3R_18479994_SNP [dm3] 3R_22654272_SNP [dm6]	C	T	1.070e^-4	0.775	INTRON CG45058
3L	7896882	3L_7896882_SNP [dm3] 3L_7903782_SNP [dm6]	G	A	1.071e^-4	0.775	UPSTREAM pbl INTRON pbl	TF binding site mE1_TFBS_D
3L	8911390	3L_8911390_SNP [dm3] 3L_8918290_SNP [dm6]	C	A	1.074e^-4	0.775	INTRON Tsp66E
X	18645733	X_18645733_SNP [dm3] X_18751700_SNP [dm6]	C	A	1.079e^-4	0.775	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13425626	3L_13425626_SNP [dm3] 3L_13432526_SNP [dm6]	T	C	1.083e^-4	0.775	UPSTREAM tRNA:V4:70BCb INTRON CG10713
2R	10508777	2R_10508777_SNP [dm3] 2R_14621272_SNP [dm6]	A	T	1.086e^-4	0.775	UTR_5_PRIME CG12863 UPSTREAM Uhg5 & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_zfh1
2L	4328876	2L_4328876_SNP [dm3] 2L_4328876_SNP [dm6]	A	T	1.090e^-4	0.775	INTRON CG16857	TF binding site mE1_TFBS_chinmo
2L	7935535	2L_7935535_SNP [dm3] 2L_7935535_SNP [dm6]	A	G	1.097e^-4	0.775	INTRON Snoo
2L	2800300	2L_2800300_SNP [dm3] 2L_2800300_SNP [dm6]	C	A	1.098e^-4	0.775	UPSTREAM Syt1 INTERGENIC
3L	2317942	3L_2317942_SNP [dm3] 3L_2317942_SNP [dm6]	C	T	1.098e^-4	0.775	UPSTREAM CR45427 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15483252	3L_15483252_SNP [dm3] 3L_15490152_SNP [dm6]	G	T	1.100e^-4	0.775	INTERGENIC
3L	3553264	3L_3553264_SNP [dm3] 3L_3553264_SNP [dm6]	T	A	1.119e^-4	0.775	INTRON Eip63E
3R	21900436	3R_21900436_SNP [dm3] 3R_26074714_SNP [dm6]	A	G	1.121e^-4	0.775	INTERGENIC
2R	4501903	2R_4501903_SNP [dm3] 2R_8614398_SNP [dm6]	G	A	1.123e^-4	0.775	UPSTREAM Cirl & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_inv
X	21866582	X_21866582_SNP [dm3] X_22464746_SNP [dm6]	G	C	1.130e^-4	0.775	NON_SYNONYMOUS_CODING CG14619 INTRON CG14619
3L	7358492	3L_7358492_SNP [dm3] 3L_7365392_SNP [dm6]	C	A	1.131e^-4	0.775	NON_SYNONYMOUS_CODING Sh3beta INTRON Sh3beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3561617	3L_3561617_DEL [dm3] 3L_3561617_DEL [dm6]	AT	A	1.132e^-4	0.775	INTRON Eip63E
3R	16989117	3R_16989117_SNP [dm3] 3R_21163395_SNP [dm6]	A	T	1.137e^-4	0.775	UPSTREAM CG5810 INTRON SNF4Agamma
2R	14323526	2R_14323526_SNP [dm3] 2R_18436021_SNP [dm6]	T	C	1.141e^-4	0.775	INTRON CG30118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19438275	2R_19438275_SNP [dm3] 2R_23550752_SNP [dm6]	C	T	1.146e^-4	0.775	SYNONYMOUS_CODING pita UPSTREAM Dcp-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2L	20353147	2L_20353147_SNP [dm3] 2L_20353147_SNP [dm6]	C	G	1.150e^-4	0.775	UPSTREAM snoRNA:Me28S-A3365 & 1 other INTRON RtGEF
2L	11219840	2L_11219840_SNP [dm3] 2L_11219840_SNP [dm6]	T	A	1.154e^-4	0.775	INTRON ab	TF binding site BDTNP1_TFBS_da
2R	19409956	2R_19409956_DEL [dm3] 2R_23522433_DEL [dm6]	GA	G	1.158e^-4	0.775	INTRON RabX1	TF binding site BDTNP1_TFBS_dl
2L	5338512	2L_5338512_SNP [dm3] 2L_5338512_SNP [dm6]	T	C	1.166e^-4	0.775	UPSTREAM fusl DOWNSTREAM CG12512 INTERGENIC
X	14694859	X_14694859_SNP [dm3] X_14800826_SNP [dm6]	A	G	1.171e^-4	0.775	SYNONYMOUS_CODING rut
3R	26982428	3R_26982428_SNP [dm3] 3R_31156706_SNP [dm6]	A	G	1.178e^-4	0.775	INTRON Gycbeta100B
3R	7331866	3R_7331866_SNP [dm3] 3R_11506144_SNP [dm6]	C	T	1.179e^-4	0.775	DOWNSTREAM dpr5 INTERGENIC
2R	12116819	2R_12116819_SNP [dm3] 2R_16229314_SNP [dm6]	A	G	1.187e^-4	0.775	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4005442	2L_4005442_SNP [dm3] 2L_4005442_SNP [dm6]	G	A	1.188e^-4	0.775	UTR_3_PRIME CG15422 UPSTREAM CG15423 DOWNSTREAM CG34176
3L	15479365	3L_15479365_INS [dm3] 3L_15486265_INS [dm6]	A	ATTT	1.194e^-4	0.775	UPSTREAM Ran-like INTERGENIC
2L	9123381	2L_9123381_INS [dm3] 2L_9123381_INS [dm6]	C	CC	1.198e^-4	0.775	UPSTREAM CR44615 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	21114882	X_21114882_DEL [dm3] X_21243855_DEL [dm6]	ATGTA	A	1.199e^-4	0.775	INTRON CG32521
3L	2124435	3L_2124435_SNP [dm3] 3L_2124435_SNP [dm6]	T	A	1.200e^-4	0.775	SYNONYMOUS_CODING zormin INTRON zormin
3L	2475279	3L_2475279_SNP [dm3] 3L_2475279_SNP [dm6]	G	T	1.200e^-4	0.775	SYNONYMOUS_CODING CG16762 DOWNSTREAM Cyp4d20 INTRON CG45186	TF binding site mE1_TFBS_HSA
3L	9718285	3L_9718285_SNP [dm3] 3L_9725185_SNP [dm6]	A	C	1.205e^-4	0.775	SYNONYMOUS_CODING defl
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	1.205e^-4	0.775	EXON CR44950
2R	18033022	2R_18033022_SNP [dm3] 2R_22145517_SNP [dm6]	C	T	1.214e^-4	0.775	INTRON a
2L	10622291	2L_10622291_SNP [dm3] 2L_10622291_SNP [dm6]	C	T	1.217e^-4	0.775	INTRON Trim9
2L	18678100	2L_18678100_SNP [dm3] 2L_18678100_SNP [dm6]	A	G	1.220e^-4	0.775	UPSTREAM CG31751 INTRON CG31751	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8413167	2R_8413167_SNP [dm3] 2R_12525662_SNP [dm6]	C	T	1.222e^-4	0.775	INTERGENIC
3R	3966140	3R_3966140_SNP [dm3] 3R_8140418_SNP [dm6]	A	C	1.222e^-4	0.775	UPSTREAM tRNA:N5:84F & 2 others DOWNSTREAM tRNA:R2:84Fc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	13600672	3R_13600672_SNP [dm3] 3R_17774950_SNP [dm6]	C	T	1.230e^-4	0.775	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4060393	X_4060393_SNP [dm3] X_4166360_SNP [dm6]	C	T	1.234e^-4	0.775	INTRON Fas2
3L	12646987	3L_12646987_SNP [dm3] 3L_12653887_SNP [dm6]	G	C	1.237e^-4	0.775	UPSTREAM CR43431 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11389600	3L_11389600_SNP [dm3] 3L_11396500_SNP [dm6]	C	A	1.238e^-4	0.775	DOWNSTREAM CG11726 INTERGENIC
2R	14978893	2R_14978893_SNP [dm3] 2R_19091388_SNP [dm6]	C	T	1.241e^-4	0.775	SYNONYMOUS_CODING 5-HT1A
2R	19451291	2R_19451291_SNP [dm3] 2R_23563768_SNP [dm6]	C	T	1.243e^-4	0.775	SYNONYMOUS_CODING Pi3K59F UPSTREAM CG30184	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17193362	3L_17193362_SNP [dm3] 3L_17200262_SNP [dm6]	G	T	1.245e^-4	0.775	INTRON Rbp6
2L	7935483	2L_7935483_SNP [dm3] 2L_7935483_SNP [dm6]	A	G	1.254e^-4	0.776	INTRON Snoo
2L	7935486	2L_7935486_SNP [dm3] 2L_7935486_SNP [dm6]	G	T	1.254e^-4	0.776	INTRON Snoo
2L	2743707	2L_2743707_SNP [dm3] 2L_2743707_SNP [dm6]	G	C	1.267e^-4	0.781	SYNONYMOUS_CODING CG9961 UTR_3_PRIME CG9961 DOWNSTREAM Hrs
2L	14157209	2L_14157209_SNP [dm3] 2L_14157209_SNP [dm6]	G	T	1.280e^-4	0.784	SYNONYMOUS_CODING CG17341
2L	7151221	2L_7151221_SNP [dm3] 2L_7151221_SNP [dm6]	G	C	1.284e^-4	0.784	INTRON Pvf3
2L	13763727	2L_13763727_SNP [dm3] 2L_13763727_SNP [dm6]	A	C	1.290e^-4	0.784	INTRON TM9SF4
2L	15107602	2L_15107602_SNP [dm3] 2L_15107602_SNP [dm6]	C	T	1.294e^-4	0.784	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	14954330	2L_14954330_SNP [dm3] 2L_14954330_SNP [dm6]	A	C	1.295e^-4	0.784	INTRON CG42313
X	20267857	X_20267857_SNP [dm3] X_20396830_SNP [dm6]	C	T	1.307e^-4	0.784	INTRON HERC2	TF binding site BDTNP1_TFBS_da
2L	12147260	2L_12147260_SNP [dm3] 2L_12147260_SNP [dm6]	T	C	1.308e^-4	0.784	INTRON CG31760
X	20215638	X_20215638_SNP [dm3] X_20344611_SNP [dm6]	G	A	1.308e^-4	0.784	INTERGENIC
3R	13171166	3R_13171166_SNP [dm3] 3R_17345444_SNP [dm6]	C	T	1.309e^-4	0.784	NON_SYNONYMOUS_CODING beat-IIa
2R	10345222	2R_10345222_INS [dm3] 2R_14457717_INS [dm6]	T	TCTCTGGAAAACTT...	1.318e^-4	0.785	UPSTREAM Oaz INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	4624624	2L_4624624_SNP [dm3] 2L_4624624_SNP [dm6]	G	A	1.319e^-4	0.785	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15895805	2R_15895805_SNP [dm3] 2R_20008300_SNP [dm6]	T	C	1.325e^-4	0.785	DOWNSTREAM CR44628 INTERGENIC
3L	10600641	3L_10600641_SNP [dm3] 3L_10607541_SNP [dm6]	G	T	1.327e^-4	0.785	INTERGENIC
X	4094020	X_4094020_SNP [dm3] X_4199987_SNP [dm6]	T	C	1.332e^-4	0.785	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	7358609	3L_7358609_SNP [dm3] 3L_7365509_SNP [dm6]	C	T	1.339e^-4	0.787	NON_SYNONYMOUS_CODING Sh3beta INTRON Sh3beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4060032	X_4060032_SNP [dm3] X_4165999_SNP [dm6]	T	G	1.346e^-4	0.789	INTRON Fas2
2L	13027014	2L_13027014_SNP [dm3] 2L_13027014_SNP [dm6]	A	G	1.367e^-4	0.791	SYNONYMOUS_CODING CG9932 INTRON CG9932	TF binding site mE1_TFBS_chinmo
2L	21929216	2L_21929216_SNP [dm3] 2L_21929216_SNP [dm6]	A	G	1.374e^-4	0.791	INTERGENIC
3L	7046713	3L_7046713_SNP [dm3] 3L_7053613_SNP [dm6]	T	C	1.375e^-4	0.791	DOWNSTREAM Mp INTERGENIC
2L	20404415	2L_20404415_DEL [dm3] 2L_20404415_DEL [dm6]	GA	G	1.386e^-4	0.791	INTRON CG10947
X	6258888	X_6258888_SNP [dm3] X_6364855_SNP [dm6]	A	C	1.387e^-4	0.791	SYNONYMOUS_CODING swa	TF binding site mE1_TFBS_chinmo
2R	8132744	2R_8132744_SNP [dm3] 2R_12245239_SNP [dm6]	T	G	1.389e^-4	0.791	UPSTREAM CG43244 INTERGENIC
2L	7935684	2L_7935684_SNP [dm3] 2L_7935684_SNP [dm6]	C	G	1.395e^-4	0.791	INTRON Snoo
2R	10503269	2R_10503269_SNP [dm3] 2R_14615764_SNP [dm6]	A	G	1.396e^-4	0.791	NON_SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19871357	X_19871357_SNP [dm3] X_19977324_SNP [dm6]	C	A	1.398e^-4	0.791	INTERGENIC
2L	18678397	2L_18678397_SNP [dm3] 2L_18678397_SNP [dm6]	A	G	1.400e^-4	0.791	UPSTREAM CG31751 INTRON CG31751
3R	5121977	3R_5121977_SNP [dm3] 3R_9296255_SNP [dm6]	A	T	1.402e^-4	0.791	INTRON CG8861
2L	10385328	2L_10385328_SNP [dm3] 2L_10385328_SNP [dm6]	A	T	1.411e^-4	0.791	SYNONYMOUS_CODING cdc2 DOWNSTREAM CG5096	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
X	8156701	X_8156701_SNP [dm3] X_8262668_SNP [dm6]	G	T	1.412e^-4	0.791	INTRON CG1632
X	21116700	X_21116700_SNP [dm3] X_21245673_SNP [dm6]	C	T	1.414e^-4	0.791	INTRON CG32521
2R	19473326	2R_19473326_SNP [dm3] 2R_23585803_SNP [dm6]	G	C	1.416e^-4	0.791	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	15483280	3L_15483280_SNP [dm3] 3L_15490180_SNP [dm6]	T	C	1.421e^-4	0.791	INTERGENIC
3R	12077068	3R_12077068_SNP [dm3] 3R_16251346_SNP [dm6]	G	A	1.422e^-4	0.791	INTRON tara	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3131466	2L_3131466_SNP [dm3] 2L_3131466_SNP [dm6]	T	C	1.433e^-4	0.795	INTRON toc
3L	10611621	3L_10611621_SNP [dm3] 3L_10618521_SNP [dm6]	A	T	1.438e^-4	0.795	INTERGENIC
2R	3531655	2R_3531655_SNP [dm3] 2R_7644150_SNP [dm6]	C	T	1.448e^-4	0.795	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340
3L	10611612	3L_10611612_SNP [dm3] 3L_10618512_SNP [dm6]	C	T	1.461e^-4	0.795	INTERGENIC
2R	901595	2R_901595_INS [dm3] 2R_5014090_INS [dm6]	T	TAT	1.464e^-4	0.795	INTRON Ir41a
3L	3562229	3L_3562229_SNP [dm3] 3L_3562229_SNP [dm6]	A	G	1.466e^-4	0.795	INTRON Eip63E
3L	23470886	3L_23470886_SNP [dm3] 3L_23477786_SNP [dm6]	C	T	1.475e^-4	0.795	INTERGENIC	transposable element FlyBase
2R	254918	2R_254918_SNP [dm3] 2R_4367413_SNP [dm6]	C	T	1.480e^-4	0.795	INTRON Gprk1
2L	19315003	2L_19315003_SNP [dm3] 2L_19315003_SNP [dm6]	A	G	1.483e^-4	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15891237	3R_15891237_DEL [dm3] 3R_20065515_DEL [dm6]	GGGTGG	AC	1.485e^-4	0.795	INTERGENIC
3L	10611641	3L_10611641_SNP [dm3] 3L_10618541_SNP [dm6]	G	T	1.487e^-4	0.795	INTERGENIC
3L	10611687	3L_10611687_SNP [dm3] 3L_10618587_SNP [dm6]	A	T	1.487e^-4	0.795	INTERGENIC
3L	10611688	3L_10611688_SNP [dm3] 3L_10618588_SNP [dm6]	G	T	1.487e^-4	0.795	INTERGENIC
2L	909370	2L_909370_SNP [dm3] 2L_909370_SNP [dm6]	G	A	1.490e^-4	0.795	INTERGENIC
3R	5709131	3R_5709131_SNP [dm3] 3R_9883409_SNP [dm6]	C	G	1.495e^-4	0.795	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	22101542	2L_22101542_SNP [dm3] 2L_22101542_SNP [dm6]	A	C	1.501e^-4	0.795	INTERGENIC
3L	14923942	3L_14923942_SNP [dm3] 3L_14930842_SNP [dm6]	T	A	1.503e^-4	0.795	INTRON DCX-EMAP
X	18509528	X_18509528_SNP [dm3] X_18615495_SNP [dm6]	T	C	1.505e^-4	0.795	INTRON CG15040	TF binding site mE1_TFBS_chinmo
2R	10345150	2R_10345150_SNP [dm3] 2R_14457645_SNP [dm6]	T	A	1.519e^-4	0.798	UPSTREAM Oaz INTRON Oaz	TF binding site mE1_TFBS_HSA
2L	3642631	2L_3642631_SNP [dm3] 2L_3642631_SNP [dm6]	A	G	1.523e^-4	0.798	INTRON for	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	8593771	2L_8593771_SNP [dm3] 2L_8593771_SNP [dm6]	A	G	1.526e^-4	0.798	INTRON Sema-1a & 1 other
2R	8135527	2R_8135527_SNP [dm3] 2R_12248022_SNP [dm6]	G	A	1.527e^-4	0.798	INTERGENIC
3R	20442585	3R_20442585_SNP [dm3] 3R_24616863_SNP [dm6]	A	G	1.545e^-4	0.803	SYNONYMOUS_CODING mld	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11079472	2R_11079472_SNP [dm3] 2R_15191967_SNP [dm6]	C	A	1.548e^-4	0.803	DOWNSTREAM Sfp51E INTERGENIC
3L	392009	3L_392009_SNP [dm3] 3L_392009_SNP [dm6]	T	A	1.550e^-4	0.803	INTRON trh EXON CR45378
3R	26077401	3R_26077401_DEL [dm3] 3R_30251679_DEL [dm6]	GTATG	G	1.556e^-4	0.803	SPLICE_SITE_DONOR CG9682 SPLICE_SITE_REGION CG9682 INTRON CG9682	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	16754295	3L_16754295_SNP [dm3] 3L_16761195_SNP [dm6]	A	T	1.559e^-4	0.803	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	392011	3L_392011_SNP [dm3] 3L_392011_SNP [dm6]	A	T	1.568e^-4	0.804	INTRON trh EXON CR45378
3L	13554710	3L_13554710_SNP [dm3] 3L_13561610_SNP [dm6]	A	G	1.577e^-4	0.804	INTRON bru-3	TF binding site mE1_TFBS_chinmo
X	584010	X_584010_SNP [dm3] X_689977_SNP [dm6]	T	G	1.578e^-4	0.804	INTRON sdk	TF binding site BDTNP1_TFBS_da
3R	15973553	3R_15973553_SNP [dm3] 3R_20147831_SNP [dm6]	G	A	1.582e^-4	0.804	INTERGENIC
2R	3532937	2R_3532937_SNP [dm3] 2R_7645432_SNP [dm6]	A	T	1.582e^-4	0.804	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340
3R	14296166	3R_14296166_SNP [dm3] 3R_18470444_SNP [dm6]	A	T	1.598e^-4	0.807	INTRON fru
3R	27248986	3R_27248986_SNP [dm3] 3R_31423264_SNP [dm6]	A	G	1.600e^-4	0.807	INTRON Gprk2
3R	18559453	3R_18559453_SNP [dm3] 3R_22733731_SNP [dm6]	T	A	1.603e^-4	0.807	DOWNSTREAM Dcr-1 INTRON Takl2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	19373097	2L_19373097_SNP [dm3] 2L_19373097_SNP [dm6]	A	G	1.609e^-4	0.807	DOWNSTREAM CG17349 INTERGENIC
2R	8129037	2R_8129037_SNP [dm3] 2R_12241532_SNP [dm6]	T	A	1.616e^-4	0.807	SPLICE_SITE_REGION CG43315 DOWNSTREAM CG13170 INTRON CG43315
2R	19539437	2R_19539437_SNP [dm3] 2R_23651914_SNP [dm6]	G	A	1.620e^-4	0.807	SYNONYMOUS_CODING retn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	23953498	3L_23953498_SNP [dm3] 3L_23960398_SNP [dm6]	T	A	1.621e^-4	0.807	INTRON CG40470
2L	11220163	2L_11220163_SNP [dm3] 2L_11220163_SNP [dm6]	G	T	1.630e^-4	0.807	INTRON ab	TF binding site BDTNP1_TFBS_dl
2L	16205251	2L_16205251_SNP [dm3] 2L_16205251_SNP [dm6]	C	T	1.639e^-4	0.807	INTERGENIC
2L	12147102	2L_12147102_SNP [dm3] 2L_12147102_SNP [dm6]	T	A	1.640e^-4	0.807	INTRON CG31760
2L	473293	2L_473293_SNP [dm3] 2L_473293_SNP [dm6]	C	A	1.640e^-4	0.807	SYNONYMOUS_CODING MED15 INTRON CG4297	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7470072	3L_7470072_SNP [dm3] 3L_7476972_SNP [dm6]	T	A	1.640e^-4	0.807	DOWNSTREAM CG43292 INTERGENIC
X	14182626	X_14182626_SNP [dm3] X_14288593_SNP [dm6]	G	A	1.651e^-4	0.81	DOWNSTREAM Muc12Ea INTRON CG9400
X	6103026	X_6103026_SNP [dm3] X_6208993_SNP [dm6]	G	A	1.658e^-4	0.81	INTERGENIC
3R	15973532	3R_15973532_SNP [dm3] 3R_20147810_SNP [dm6]	A	C	1.659e^-4	0.81	INTERGENIC
3R	12364673	3R_12364673_SNP [dm3] 3R_16538951_SNP [dm6]	C	G	1.664e^-4	0.81	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_h mE1_TFBS_HSA
3L	5145535	3L_5145535_SNP [dm3] 3L_5152435_SNP [dm6]	T	C	1.680e^-4	0.812	UPSTREAM Srp54k & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
X	3162612	X_3162612_SNP [dm3] X_3268579_SNP [dm6]	G	T	1.684e^-4	0.812	INTRON dnc
3R	24037656	3R_24037656_SNP [dm3] 3R_28211934_SNP [dm6]	G	A	1.695e^-4	0.812	INTRON CG34354	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4843341	3L_4843341_SNP [dm3] 3L_4843341_SNP [dm6]	A	C	1.697e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	10969882	3R_10969882_SNP [dm3] 3R_15144160_SNP [dm6]	A	C	1.697e^-4	0.812	INTRON GlyS	TF binding site mE1_TFBS_cad
2R	4036986	2R_4036986_SNP [dm3] 2R_8149481_SNP [dm6]	A	C	1.701e^-4	0.812	UPSTREAM kermit INTRON Lpin & 1 other	TF binding site mE1_TFBS_cad
3L	10458623	3L_10458623_SNP [dm3] 3L_10465523_SNP [dm6]	T	A	1.701e^-4	0.812	UPSTREAM S-Lap3 DOWNSTREAM CG32061 INTRON S-Lap3
2L	4491596	2L_4491596_SNP [dm3] 2L_4491596_SNP [dm6]	A	G	1.706e^-4	0.812	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad
2R	7228039	2R_7228039_SNP [dm3] 2R_11340534_SNP [dm6]	T	C	1.711e^-4	0.812	UTR_3_PRIME etaTry UPSTREAM zetaTry	TF binding site mE1_TFBS_cad
2L	22020382	2L_22020382_SNP [dm3] 2L_22020382_SNP [dm6]	G	T	1.714e^-4	0.812	DOWNSTREAM CR33987 INTRON tio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	21921454	3R_21921454_INS [dm3] 3R_26095732_INS [dm6]	A	ATTTGAAGGCAACCAAACGC...	1.715e^-4	0.812	INTRON dys	regulatory region REDfly_CRMs
2R	13588231	2R_13588231_SNP [dm3] 2R_17700726_SNP [dm6]	C	T	1.723e^-4	0.813	UPSTREAM snoRNA:U76:54Eb & 4 others DOWNSTREAM snoRNA:Me28S-A3407a & 3 others INTRON Uhg1
X	5951052	X_5951052_SNP [dm3] X_6057019_SNP [dm6]	G	T	1.727e^-4	0.814	INTRON CG5921	TF binding site BDTNP1_TFBS_twi
2L	1542729	2L_1542729_SNP [dm3] 2L_1542729_SNP [dm6]	C	T	1.736e^-4	0.814	INTERGENIC
3L	14929721	3L_14929721_SNP [dm3] 3L_14936621_SNP [dm6]	G	A	1.737e^-4	0.814	INTRON DCX-EMAP
3R	19776867	3R_19776867_SNP [dm3] 3R_23951145_SNP [dm6]	G	A	1.743e^-4	0.814	DOWNSTREAM Aats-glupro INTERGENIC
3L	15619294	3L_15619294_SNP [dm3] 3L_15626194_SNP [dm6]	G	T	1.751e^-4	0.814	INTRON comm3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	9201306	3L_9201306_SNP [dm3] 3L_9208206_SNP [dm6]	C	T	1.758e^-4	0.814	UTR_5_PRIME Slc45-1 UPSTREAM Slc45-1
3R	26067919	3R_26067919_SNP [dm3] 3R_30242197_SNP [dm6]	T	A	1.764e^-4	0.814	SYNONYMOUS_CODING CG9737
3L	2475152	3L_2475152_SNP [dm3] 3L_2475152_SNP [dm6]	T	A	1.779e^-4	0.814	INTRON CG45186 & 1 other
2L	17575506	2L_17575506_SNP [dm3] 2L_17575506_SNP [dm6]	G	A	1.784e^-4	0.814	UPSTREAM CR45358 DOWNSTREAM mir-287 INTERGENIC
3L	6962523	3L_6962523_SNP [dm3] 3L_6969423_SNP [dm6]	A	C	1.791e^-4	0.814	UPSTREAM CG9953 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx
3R	11979653	3R_11979653_SNP [dm3] 3R_16153931_SNP [dm6]	T	A	1.794e^-4	0.814	INTERGENIC
2R	14910868	2R_14910868_SNP [dm3] 2R_19023363_SNP [dm6]	C	T	1.800e^-4	0.814	UTR_3_PRIME 5-HT1B DOWNSTREAM 5-HT1B
3R	17829964	3R_17829964_SNP [dm3] 3R_22004242_SNP [dm6]	A	T	1.805e^-4	0.814	SYNONYMOUS_CODING Eip93F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	5692639	3L_5692639_SNP [dm3] 3L_5699539_SNP [dm6]	C	G	1.806e^-4	0.814	INTRON sif	TF binding site mE1_TFBS_chinmo
2L	10406227	2L_10406227_SNP [dm3] 2L_10406227_SNP [dm6]	C	T	1.808e^-4	0.814	SYNONYMOUS_CODING Ir31a	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2L	7074669	2L_7074669_DEL [dm3] 2L_7074669_DEL [dm6]	CGTGGCGGCC	AA	1.808e^-4	0.814	INTRON Pvf2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4341414	3L_4341414_SNP [dm3] 3L_4341414_SNP [dm6]	A	C	1.810e^-4	0.814	INTRON Cip4
3L	391971	3L_391971_SNP [dm3] 3L_391971_SNP [dm6]	C	A	1.810e^-4	0.814	DOWNSTREAM CR45378 INTRON trh
3L	3558216	3L_3558216_SNP [dm3] 3L_3558216_SNP [dm6]	T	C	1.811e^-4	0.814	INTRON Eip63E	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sbb
X	15859407	X_15859407_SNP [dm3] X_15965374_SNP [dm6]	G	C	1.813e^-4	0.814	DOWNSTREAM mir-927 INTRON mmd
2L	718061	2L_718061_SNP [dm3] 2L_718061_SNP [dm6]	C	G	1.814e^-4	0.814	INTERGENIC
2L	16619032	2L_16619032_SNP [dm3] 2L_16619032_SNP [dm6]	A	C	1.827e^-4	0.817	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	3554496	3L_3554496_SNP [dm3] 3L_3554496_SNP [dm6]	A	G	1.835e^-4	0.819	INTRON Eip63E
3L	10611703	3L_10611703_SNP [dm3] 3L_10618603_SNP [dm6]	A	T	1.847e^-4	0.82	INTERGENIC
3R	20720662	3R_20720662_SNP [dm3] 3R_24894940_SNP [dm6]	T	C	1.849e^-4	0.82	UPSTREAM CG31121 INTRON CG11069	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	17957785	2L_17957785_SNP [dm3] 2L_17957785_SNP [dm6]	T	G	1.864e^-4	0.82	INTERGENIC
2R	13588232	2R_13588232_SNP [dm3] 2R_17700727_SNP [dm6]	A	T	1.893e^-4	0.82	UPSTREAM snoRNA:U76:54Eb & 4 others DOWNSTREAM snoRNA:Me28S-A3407a & 3 others INTRON Uhg1
3R	20264577	3R_20264577_SNP [dm3] 3R_24438855_SNP [dm6]	G	A	1.895e^-4	0.82	INTRON nAChRalpha1
3L	4708202	3L_4708202_SNP [dm3] 3L_4708202_SNP [dm6]	T	C	1.898e^-4	0.82	INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22283636	3R_22283636_SNP [dm3] 3R_26457914_SNP [dm6]	G	A	1.925e^-4	0.82	UPSTREAM CG14238 DOWNSTREAM CG14237 INTERGENIC
3R	14265072	3R_14265072_SNP [dm3] 3R_18439350_SNP [dm6]	A	G	1.927e^-4	0.82	UPSTREAM fru INTRON fru
3L	14923950	3L_14923950_SNP [dm3] 3L_14930850_SNP [dm6]	T	C	1.932e^-4	0.82	INTRON DCX-EMAP
3L	586973	3L_586973_SNP [dm3] 3L_586973_SNP [dm6]	C	A	1.935e^-4	0.82	INTRON Kah
X	21231603	X_21231603_SNP [dm3] X_21360576_SNP [dm6]	C	T	1.937e^-4	0.82	INTRON Sep1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6103021	X_6103021_SNP [dm3] X_6208988_SNP [dm6]	T	C	1.942e^-4	0.82	INTERGENIC
X	6683309	X_6683309_SNP [dm3] X_6789276_SNP [dm6]	C	A	1.943e^-4	0.82	INTRON C3G
2L	18442001	2L_18442001_SNP [dm3] 2L_18442001_SNP [dm6]	G	A	1.958e^-4	0.82	UTR_3_PRIME RpS26 DOWNSTREAM RpS26	TF binding site mE1_TFBS_zfh1
3L	7462739	3L_7462739_SNP [dm3] 3L_7469639_SNP [dm6]	G	A	1.968e^-4	0.82	SYNONYMOUS_CODING CG8543 DOWNSTREAM Tsp66A & 2 others
2L	15090517	2L_15090517_SNP [dm3] 2L_15090517_SNP [dm6]	A	G	1.969e^-4	0.82	INTRON CG15270
3R	6780481	3R_6780481_SNP [dm3] 3R_10954759_SNP [dm6]	C	G	1.971e^-4	0.82	INTERGENIC
3L	7467068	3L_7467068_SNP [dm3] 3L_7473968_SNP [dm6]	C	A	1.975e^-4	0.82	INTERGENIC
3R	19450990	3R_19450990_SNP [dm3] 3R_23625268_SNP [dm6]	A	G	1.979e^-4	0.82	INTRON CG31145
2R	8137696	2R_8137696_SNP [dm3] 2R_12250191_SNP [dm6]	A	T	1.981e^-4	0.82	INTERGENIC
2R	10345181	2R_10345181_INS [dm3] 2R_14457676_INS [dm6]	A	ATTTA	1.982e^-4	0.82	UPSTREAM Oaz INTRON Oaz	TF binding site mE1_TFBS_HSA
2R	16962141	2R_16962141_SNP [dm3] 2R_21074636_SNP [dm6]	T	C	1.984e^-4	0.82	INTRON Treh
3L	2356978	3L_2356978_SNP [dm3] 3L_2356978_SNP [dm6]	T	C	1.988e^-4	0.82	INTERGENIC
2L	18769269	2L_18769269_SNP [dm3] 2L_18769269_SNP [dm6]	C	T	1.990e^-4	0.82	INTRON ham
2R	16970501	2R_16970501_SNP [dm3] 2R_21082996_SNP [dm6]	G	A	1.992e^-4	0.82	INTRON Treh	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20565182	3R_20565182_SNP [dm3] 3R_24739460_SNP [dm6]	T	G	1.993e^-4	0.82	INTRON tok
2R	11823051	2R_11823051_SNP [dm3] 2R_15935546_SNP [dm6]	G	A	1.994e^-4	0.82	SYNONYMOUS_CODING CG8297 UPSTREAM Iap2 DOWNSTREAM Mlf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	27086153	3R_27086153_SNP [dm3] 3R_31260431_SNP [dm6]	C	T	1.994e^-4	0.82	SYNONYMOUS_CODING CG18672 DOWNSTREAM CG3669
3L	17193388	3L_17193388_SNP [dm3] 3L_17200288_SNP [dm6]	T	A	1.997e^-4	0.82	INTRON Rbp6
X	14488376	X_14488376_SNP [dm3] X_14594343_SNP [dm6]	T	G	2.000e^-4	0.82	INTRON CG9413
3R	24718586	3R_24718586_SNP [dm3] 3R_28892864_SNP [dm6]	C	A	2.004e^-4	0.82	INTRON Doa
2L	16388707	2L_16388707_DEL [dm3] 2L_16388707_DEL [dm6]	GT	G	2.005e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17958250	2L_17958250_SNP [dm3] 2L_17958250_SNP [dm6]	T	G	2.006e^-4	0.82	INTERGENIC
3L	392008	3L_392008_SNP [dm3] 3L_392008_SNP [dm6]	T	A	2.007e^-4	0.82	INTRON trh EXON CR45378
2L	14349919	2L_14349919_SNP [dm3] 2L_14349919_SNP [dm6]	T	A	2.008e^-4	0.82	DOWNSTREAM CR44850 INTRON l_2_34Fc
3L	9554062	3L_9554062_SNP [dm3] 3L_9560962_SNP [dm6]	A	G	2.014e^-4	0.82	INTRON CG42673
2L	1696416	2L_1696416_SNP [dm3] 2L_1696416_SNP [dm6]	A	G	2.017e^-4	0.82	SYNONYMOUS_CODING chinmo UTR_3_PRIME chinmo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18442020	2L_18442020_SNP [dm3] 2L_18442020_SNP [dm6]	T	G	2.030e^-4	0.82	UTR_3_PRIME RpS26 DOWNSTREAM RpS26
X	9390918	X_9390918_INS [dm3] X_9496885_INS [dm6]	T	TTTGGCTATTATTGTTATAC...	2.038e^-4	0.82	UPSTREAM mgl INTRON mgl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	25726284	3R_25726284_SNP [dm3] 3R_29900562_SNP [dm6]	A	C	2.041e^-4	0.82	INTRON CG31038
3L	3561314	3L_3561314_SNP [dm3] 3L_3561314_SNP [dm6]	A	T	2.041e^-4	0.82	INTRON Eip63E	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	19410022	2R_19410022_SNP [dm3] 2R_23522499_SNP [dm6]	A	G	2.047e^-4	0.82	INTRON RabX1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	19079237	2L_19079237_SNP [dm3] 2L_19079237_SNP [dm6]	C	T	2.048e^-4	0.82	UPSTREAM CG10700 DOWNSTREAM Lim3 INTERGENIC
3L	22110332	3L_22110332_SNP [dm3] 3L_22117232_SNP [dm6]	C	G	2.049e^-4	0.82	INTERGENIC
X	3193452	X_3193452_SNP [dm3] X_3299419_SNP [dm6]	G	C	2.051e^-4	0.82	INTRON dnc	TF binding site mE1_TFBS_HSA
X	3193455	X_3193455_SNP [dm3] X_3299422_SNP [dm6]	G	C	2.051e^-4	0.82	INTRON dnc	TF binding site mE1_TFBS_HSA
3L	2475262	3L_2475262_SNP [dm3] 3L_2475262_SNP [dm6]	T	A	2.051e^-4	0.82	SYNONYMOUS_CODING CG16762 DOWNSTREAM Cyp4d20 INTRON CG45186	TF binding site mE1_TFBS_HSA
2L	3694227	2L_3694227_SNP [dm3] 2L_3694227_SNP [dm6]	A	C	2.056e^-4	0.82	UPSTREAM Acp24A4 DOWNSTREAM CG43165 & 1 other EXON CR43364
3L	10266871	3L_10266871_SNP [dm3] 3L_10273771_SNP [dm6]	T	C	2.057e^-4	0.82	SYNONYMOUS_CODING Or67d
2R	16866650	2R_16866650_SNP [dm3] 2R_20979145_SNP [dm6]	A	T	2.065e^-4	0.82	START_GAINED CG9313 UTR_5_PRIME CG9313 UPSTREAM CG15650 & 1 other
X	14711652	X_14711652_INS [dm3] X_14817619_INS [dm6]	G	TA	2.074e^-4	0.82	INTRON rut
2R	8413147	2R_8413147_SNP [dm3] 2R_12525642_SNP [dm6]	T	G	2.074e^-4	0.82	INTERGENIC
3L	10611615	3L_10611615_SNP [dm3] 3L_10618515_SNP [dm6]	T	A	2.076e^-4	0.82	INTERGENIC
2L	10410515	2L_10410515_SNP [dm3] 2L_10410515_SNP [dm6]	G	A	2.076e^-4	0.82	DOWNSTREAM CG5355 & 2 others INTERGENIC
3L	3553303	3L_3553303_INS [dm3] 3L_3553303_INS [dm6]	T	TTTT	2.077e^-4	0.82	INTRON Eip63E
3L	12055474	3L_12055474_SNP [dm3] 3L_12062374_SNP [dm6]	C	G	2.091e^-4	0.823	INTRON rols	TF binding site BDTNP1_TFBS_da
3L	14929590	3L_14929590_SNP [dm3] 3L_14936490_SNP [dm6]	G	C	2.100e^-4	0.823	INTRON DCX-EMAP
3L	337491	3L_337491_SNP [dm3] 3L_337491_SNP [dm6]	C	T	2.100e^-4	0.823	INTRON Ptpmeg & 1 other
3R	3965610	3R_3965610_SNP [dm3] 3R_8139888_SNP [dm6]	T	C	2.111e^-4	0.824	UPSTREAM tRNA:N5:84F DOWNSTREAM tRNA:R2:84Fe & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	14031444	2R_14031444_SNP [dm3] 2R_18143939_SNP [dm6]	G	A	2.114e^-4	0.824	SYNONYMOUS_CODING pAbp DOWNSTREAM snoRNA:Psi18S-1347b & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	4018943	3L_4018943_SNP [dm3] 3L_4018943_SNP [dm6]	A	T	2.115e^-4	0.824	UTR_5_PRIME fd64A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	15200587	3L_15200587_SNP [dm3] 3L_15207487_SNP [dm6]	C	T	2.118e^-4	0.824	UPSTREAM CG6888 INTERGENIC
2R	11461709	2R_11461709_SNP [dm3] 2R_15574204_SNP [dm6]	T	A	2.125e^-4	0.825	UPSTREAM CG8204 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13547315	3L_13547315_SNP [dm3] 3L_13554215_SNP [dm6]	C	T	2.129e^-4	0.825	INTRON bru-3
3R	21421582	3R_21421582_SNP [dm3] 3R_25595860_SNP [dm6]	G	A	2.135e^-4	0.825	INTRON ymp & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11081134	2R_11081134_SNP [dm3] 2R_15193629_SNP [dm6]	T	A	2.155e^-4	0.831	UPSTREAM Sfp51E DOWNSTREAM CG43829 INTERGENIC
X	4986436	X_4986436_SNP [dm3] X_5092403_SNP [dm6]	T	A	2.160e^-4	0.831	INTRON rg & 1 other
X	12891158	X_12891158_SNP [dm3] X_12997125_SNP [dm6]	T	A	2.163e^-4	0.831	INTRON rad
3L	5872090	3L_5872090_SNP [dm3] 3L_5878990_SNP [dm6]	A	G	2.172e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	18442017	2L_18442017_SNP [dm3] 2L_18442017_SNP [dm6]	C	A	2.174e^-4	0.831	UTR_3_PRIME RpS26 DOWNSTREAM RpS26
2R	10345216	2R_10345216_SNP [dm3] 2R_14457711_SNP [dm6]	A	G	2.181e^-4	0.831	UPSTREAM Oaz INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	19367828	2L_19367828_SNP [dm3] 2L_19367828_SNP [dm6]	T	G	2.184e^-4	0.831	INTERGENIC
2L	16240255	2L_16240255_SNP [dm3] 2L_16240255_SNP [dm6]	A	G	2.185e^-4	0.831	UTR_3_PRIME CG42817
3L	2909732	3L_2909732_DEL [dm3] 3L_2909732_DEL [dm6]	GG	G	2.191e^-4	0.831	INTRON Shab
2R	19451486	2R_19451486_SNP [dm3] 2R_23563963_SNP [dm6]	A	G	2.214e^-4	0.838	UTR_3_PRIME Pi3K59F UPSTREAM CG30184 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21903452	2L_21903452_SNP [dm3] 2L_21903452_SNP [dm6]	C	G	2.226e^-4	0.838	SYNONYMOUS_CODING CG1421
3L	7307105	3L_7307105_SNP [dm3] 3L_7314005_SNP [dm6]	C	T	2.233e^-4	0.838	INTERGENIC
3R	26978182	3R_26978182_SNP [dm3] 3R_31152460_SNP [dm6]	A	G	2.235e^-4	0.838	SYNONYMOUS_CODING Gycbeta100B
2L	19716262	2L_19716262_SNP [dm3] 2L_19716262_SNP [dm6]	G	T	2.241e^-4	0.838	INTRON Lar
2L	11219804	2L_11219804_SNP [dm3] 2L_11219804_SNP [dm6]	T	A	2.243e^-4	0.838	INTRON ab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	15098132	3R_15098132_SNP [dm3] 3R_19272410_SNP [dm6]	T	C	2.245e^-4	0.838	INTERGENIC
2L	13354985	2L_13354985_SNP [dm3] 2L_13354985_SNP [dm6]	G	C	2.257e^-4	0.838	UTR_5_PRIME CG9395	TF binding site mE1_TFBS_Trl
3L	3560176	3L_3560176_SNP [dm3] 3L_3560176_SNP [dm6]	T	A	2.266e^-4	0.838	INTRON Eip63E	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	7700435	3L_7700435_DEL [dm3] 3L_7707335_DEL [dm6]	AC	A	2.269e^-4	0.838	INTRON CG32373 & 1 other	TF binding site mE1_TFBS_chinmo
2L	3792810	2L_3792810_SNP [dm3] 2L_3792810_SNP [dm6]	T	G	2.272e^-4	0.838	INTRON CG3921
3L	6962517	3L_6962517_SNP [dm3] 3L_6969417_SNP [dm6]	T	A	2.286e^-4	0.838	UPSTREAM CG9953 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx
2R	10578756	2R_10578756_SNP [dm3] 2R_14691251_SNP [dm6]	T	C	2.288e^-4	0.838	INTRON mspo
3R	26063241	3R_26063241_SNP [dm3] 3R_30237519_SNP [dm6]	A	T	2.288e^-4	0.838	INTRON CG43448	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14510168	2R_14510168_SNP [dm3] 2R_18622663_SNP [dm6]	T	C	2.307e^-4	0.838	SYNONYMOUS_CODING CG5335 INTRON Atg7	TF binding site mE1_TFBS_HSA
X	19871079	X_19871079_SNP [dm3] X_19977046_SNP [dm6]	A	G	2.308e^-4	0.838	INTERGENIC
X	4848439	X_4848439_SNP [dm3] X_4954406_SNP [dm6]	C	T	2.312e^-4	0.838	SYNONYMOUS_CODING Ptp4E DOWNSTREAM Ptp4E INTRON Ptp4E
2R	18817694	2R_18817694_SNP [dm3] 2R_22930171_SNP [dm6]	A	G	2.319e^-4	0.838	DOWNSTREAM CG42678 INTRON CG42678	TF binding site mE1_TFBS_inv
3R	4266695	3R_4266695_SNP [dm3] 3R_8440973_SNP [dm6]	G	A	2.324e^-4	0.838	INTRON CG45263
2R	10345199	2R_10345199_SNP [dm3] 2R_14457694_SNP [dm6]	C	T	2.325e^-4	0.838	UPSTREAM Oaz INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4448327	2L_4448327_SNP [dm3] 2L_4448327_SNP [dm6]	G	A	2.327e^-4	0.838	DOWNSTREAM CG15439 INTRON MFS18	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	25323777	3R_25323777_SNP [dm3] 3R_29498055_SNP [dm6]	A	G	2.337e^-4	0.838	DOWNSTREAM Trc8 INTRON CG2010	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	14136701	2R_14136701_SNP [dm3] 2R_18249196_SNP [dm6]	C	T	2.340e^-4	0.838	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	27248304	3R_27248304_SNP [dm3] 3R_31422582_SNP [dm6]	C	T	2.347e^-4	0.838	INTRON Gprk2
2L	5758264	2L_5758264_SNP [dm3] 2L_5758264_SNP [dm6]	A	C	2.361e^-4	0.838	INTRON CG11030	TF binding site mE1_TFBS_cad
2L	18678228	2L_18678228_SNP [dm3] 2L_18678228_SNP [dm6]	G	A	2.364e^-4	0.838	UPSTREAM CG31751 INTRON CG31751
3R	25323545	3R_25323545_SNP [dm3] 3R_29497823_SNP [dm6]	C	G	2.376e^-4	0.838	SYNONYMOUS_CODING CG2010	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	6629658	3R_6629658_SNP [dm3] 3R_10803936_SNP [dm6]	G	T	2.381e^-4	0.838	UPSTREAM CG14692 INTERGENIC
2R	10449681	2R_10449681_SNP [dm3] 2R_14562176_SNP [dm6]	A	G	2.382e^-4	0.838	INTRON ttv
3R	14338279	3R_14338279_SNP [dm3] 3R_18512557_SNP [dm6]	G	T	2.383e^-4	0.838	INTRON fru
3R	26063242	3R_26063242_SNP [dm3] 3R_30237520_SNP [dm6]	A	C	2.393e^-4	0.838	SPLICE_SITE_REGION CG43448 INTRON CG43448	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	3483341	X_3483341_DEL [dm3] X_3589308_DEL [dm6]	AACCAAA	A	2.399e^-4	0.838	INTRON AstA-R1
3R	15891233	3R_15891233_SNP [dm3] 3R_20065511_SNP [dm6]	C	A	2.401e^-4	0.838	INTERGENIC
3R	27271628	3R_27271628_INS [dm3] 3R_31445906_INS [dm6]	T	GA	2.418e^-4	0.838	INTRON Gprk2
X	18645723	X_18645723_SNP [dm3] X_18751690_SNP [dm6]	A	G	2.428e^-4	0.838	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4929206	2L_4929206_SNP [dm3] 2L_4929206_SNP [dm6]	A	G	2.429e^-4	0.838	UPSTREAM hoe1 INTRON hoe1
2L	21929390	2L_21929390_SNP [dm3] 2L_21929390_SNP [dm6]	G	C	2.439e^-4	0.838	UPSTREAM CR45334 INTERGENIC
3R	14616583	3R_14616583_SNP [dm3] 3R_18790861_SNP [dm6]	G	T	2.446e^-4	0.838	INTRON CG7720
2L	9508648	2L_9508648_SNP [dm3] 2L_9508648_SNP [dm6]	G	A	2.452e^-4	0.838	INTRON CG33298	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	20262202	X_20262202_SNP [dm3] X_20391175_SNP [dm6]	C	A	2.459e^-4	0.838	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13193416	2R_13193416_SNP [dm3] 2R_17305911_SNP [dm6]	A	T	2.471e^-4	0.838	DOWNSTREAM CR43661 INTRON mbl
3L	24033547	3L_24033547_SNP [dm3] 3L_24040447_SNP [dm6]	C	T	2.475e^-4	0.838	INTERGENIC
X	16010240	X_16010240_SNP [dm3] X_16116207_SNP [dm6]	T	A	2.488e^-4	0.838	INTERGENIC
3R	6931371	3R_6931371_SNP [dm3] 3R_11105649_SNP [dm6]	A	T	2.491e^-4	0.838	INTERGENIC
2R	17919959	2R_17919959_SNP [dm3] 2R_22032454_SNP [dm6]	T	C	2.493e^-4	0.838	INTRON CG34370
2R	9308636	2R_9308636_SNP [dm3] 2R_13421131_SNP [dm6]	A	G	2.498e^-4	0.838	SYNONYMOUS_CODING CG42321
3L	15488911	3L_15488911_SNP [dm3] 3L_15495811_SNP [dm6]	A	T	2.500e^-4	0.838	UPSTREAM CG12355 & 1 other INTERGENIC
2R	17168816	2R_17168816_SNP [dm3] 2R_21281311_SNP [dm6]	A	G	2.503e^-4	0.838	SYNONYMOUS_CODING CG34203 UPSTREAM MFS16 DOWNSTREAM Rgk3
2R	20018526	2R_20018526_SNP [dm3] 2R_24131003_SNP [dm6]	C	T	2.508e^-4	0.838	INTRON tamo
3L	4841147	3L_4841147_SNP [dm3] 3L_4841147_SNP [dm6]	C	A	2.508e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	17456726	3L_17456726_SNP [dm3] 3L_17463626_SNP [dm6]	A	G	2.515e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	19888102	2R_19888102_SNP [dm3] 2R_24000579_SNP [dm6]	T	G	2.519e^-4	0.838	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	17138834	2L_17138834_DEL [dm3] 2L_17138834_DEL [dm6]	AA	A	2.528e^-4	0.838	INTRON beat-IIIa & 1 other
3R	10805489	3R_10805489_SNP [dm3] 3R_14979767_SNP [dm6]	C	T	2.534e^-4	0.838	INTERGENIC
3R	14338241	3R_14338241_SNP [dm3] 3R_18512519_SNP [dm6]	G	A	2.539e^-4	0.838	INTRON fru
2R	11177864	2R_11177864_SNP [dm3] 2R_15290359_SNP [dm6]	A	G	2.539e^-4	0.838	INTRON Trpm
3R	15407505	3R_15407505_SNP [dm3] 3R_19581783_SNP [dm6]	T	C	2.549e^-4	0.838	INTRON Dys
3R	20197915	3R_20197915_SNP [dm3] 3R_24372193_SNP [dm6]	A	T	2.552e^-4	0.838	INTRON CG17782	TF binding site mE1_TFBS_chinmo
X	18378560	X_18378560_SNP [dm3] X_18484527_SNP [dm6]	C	G	2.553e^-4	0.838	UTR_3_PRIME psh UPSTREAM Hayan
3R	12077052	3R_12077052_SNP [dm3] 3R_16251330_SNP [dm6]	T	A	2.553e^-4	0.838	INTRON tara	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6705394	3L_6705394_SNP [dm3] 3L_6712294_SNP [dm6]	C	T	2.556e^-4	0.838	INTERGENIC
2R	8132682	2R_8132682_SNP [dm3] 2R_12245177_SNP [dm6]	C	T	2.564e^-4	0.838	UPSTREAM CG43244 INTERGENIC
2R	10345148	2R_10345148_SNP [dm3] 2R_14457643_SNP [dm6]	T	C	2.571e^-4	0.838	UPSTREAM Oaz INTRON Oaz	TF binding site mE1_TFBS_HSA
2L	11334522	2L_11334522_SNP [dm3] 2L_11334522_SNP [dm6]	A	C	2.577e^-4	0.838	INTERGENIC
X	21081307	X_21081307_SNP [dm3] X_21210280_SNP [dm6]	A	G	2.589e^-4	0.838	INTRON CG32521
2L	16263203	2L_16263203_DEL [dm3] 2L_16263203_DEL [dm6]	TG	T	2.593e^-4	0.838	DOWNSTREAM crp INTRON CG4935
3R	21900695	3R_21900695_SNP [dm3] 3R_26074973_SNP [dm6]	C	G	2.595e^-4	0.838	INTERGENIC
3L	391977	3L_391977_SNP [dm3] 3L_391977_SNP [dm6]	A	T	2.595e^-4	0.838	DOWNSTREAM CR45378 INTRON trh
X	13692221	X_13692221_SNP [dm3] X_13798188_SNP [dm6]	C	A	2.597e^-4	0.838	UPSTREAM CG10996 INTRON inaE
3R	13600157	3R_13600157_SNP [dm3] 3R_17774435_SNP [dm6]	T	G	2.598e^-4	0.838	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
3L	718514	3L_718514_SNP [dm3] 3L_718514_SNP [dm6]	A	G	2.600e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13109053	2R_13109053_SNP [dm3] 2R_17221548_SNP [dm6]	T	C	2.607e^-4	0.838	INTRON mbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17951025	2R_17951025_SNP [dm3] 2R_22063520_SNP [dm6]	T	C	2.617e^-4	0.838	INTRON Snp
3L	6572244	3L_6572244_SNP [dm3] 3L_6579144_SNP [dm6]	G	C	2.618e^-4	0.838	INTRON CG18769 & 1 other
2L	3825942	2L_3825942_SNP [dm3] 2L_3825942_SNP [dm6]	G	T	2.625e^-4	0.838	SYNONYMOUS_CODING slp1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26864029	3R_26864029_SNP [dm3] 3R_31038307_SNP [dm6]	G	A	2.631e^-4	0.838	INTERGENIC
3R	26039998	3R_26039998_SNP [dm3] 3R_30214276_SNP [dm6]	A	G	2.632e^-4	0.838	UPSTREAM CecB INTERGENIC
2L	718060	2L_718060_SNP [dm3] 2L_718060_SNP [dm6]	A	C	2.639e^-4	0.838	INTERGENIC
3R	2868309	3R_2868309_SNP [dm3] 3R_7042587_SNP [dm6]	G	A	2.643e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	8018181	X_8018181_SNP [dm3] X_8124148_SNP [dm6]	G	A	2.646e^-4	0.838	INTRON cyr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18645744	X_18645744_SNP [dm3] X_18751711_SNP [dm6]	G	A	2.648e^-4	0.838	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3015914	X_3015914_SNP [dm3] X_3121881_SNP [dm6]	A	G	2.651e^-4	0.838	INTRON kirre
3L	10267562	3L_10267562_SNP [dm3] 3L_10274462_SNP [dm6]	A	C	2.651e^-4	0.838	SYNONYMOUS_CODING Or67d
3R	6336788	3R_6336788_DEL [dm3] 3R_10511066_DEL [dm6]	GTTA	G	2.653e^-4	0.838	UTR_3_PRIME hth
2L	6090501	2L_6090501_SNP [dm3] 2L_6090501_SNP [dm6]	C	T	2.653e^-4	0.838	UPSTREAM Kr-h1 & 1 other INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	4855172	2L_4855172_SNP [dm3] 2L_4855172_SNP [dm6]	G	A	2.664e^-4	0.838	INTRON pog
X	19873081	X_19873081_SNP [dm3] X_19979048_SNP [dm6]	G	T	2.665e^-4	0.838	INTERGENIC
3R	25283460	3R_25283460_SNP [dm3] 3R_29457738_SNP [dm6]	A	G	2.673e^-4	0.838	INTRON Ptp99A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	12077106	3R_12077106_SNP [dm3] 3R_16251384_SNP [dm6]	T	A	2.684e^-4	0.838	INTRON tara	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5366487	2L_5366487_SNP [dm3] 2L_5366487_SNP [dm6]	C	G	2.686e^-4	0.838	DOWNSTREAM nompC INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	6017234	2R_6017234_SNP [dm3] 2R_10129729_SNP [dm6]	T	C	2.688e^-4	0.838	INTRON gem
3L	3541729	3L_3541729_SNP [dm3] 3L_3541729_SNP [dm6]	G	T	2.692e^-4	0.838	INTRON Eip63E
X	14072787	X_14072787_SNP [dm3] X_14178754_SNP [dm6]	G	T	2.693e^-4	0.838	DOWNSTREAM CG11581 INTERGENIC
3R	15891234	3R_15891234_SNP [dm3] 3R_20065512_SNP [dm6]	G	A	2.699e^-4	0.838	INTERGENIC
X	20215260	X_20215260_SNP [dm3] X_20344233_SNP [dm6]	A	C	2.708e^-4	0.838	INTERGENIC	transposable element FlyBase
2L	5901886	2L_5901886_SNP [dm3] 2L_5901886_SNP [dm6]	T	A	2.712e^-4	0.838	INTERGENIC
3L	3553380	3L_3553380_SNP [dm3] 3L_3553380_SNP [dm6]	G	A	2.715e^-4	0.838	INTRON Eip63E
3L	17248602	3L_17248602_SNP [dm3] 3L_17255502_SNP [dm6]	G	T	2.721e^-4	0.838	INTRON CR43870	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4792954	X_4792954_SNP [dm3] X_4898921_SNP [dm6]	G	T	2.723e^-4	0.838	INTRON CG42594
X	18645729	X_18645729_SNP [dm3] X_18751696_SNP [dm6]	T	A	2.723e^-4	0.838	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3556422	3L_3556422_SNP [dm3] 3L_3556422_SNP [dm6]	G	A	2.730e^-4	0.838	INTRON Eip63E
3R	25155781	3R_25155781_SNP [dm3] 3R_29330059_SNP [dm6]	G	T	2.732e^-4	0.838	INTERGENIC
3R	8587669	3R_8587669_SNP [dm3] 3R_12761947_SNP [dm6]	G	C	2.732e^-4	0.838	INTRON beat-Vc
2R	16965118	2R_16965118_SNP [dm3] 2R_21077613_SNP [dm6]	C	T	2.736e^-4	0.838	INTRON Treh
2R	13400409	2R_13400409_SNP [dm3] 2R_17512904_SNP [dm6]	G	A	2.740e^-4	0.838	SYNONYMOUS_CODING CG4847	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	20634991	X_20634991_SNP [dm3] X_20763964_SNP [dm6]	T	C	2.742e^-4	0.838	UTR_3_PRIME shakB
2L	14631835	2L_14631835_SNP [dm3] 2L_14631835_SNP [dm6]	C	A	2.747e^-4	0.838	INTRON osp
X	19791407	X_19791407_SNP [dm3] X_19897374_SNP [dm6]	C	T	2.750e^-4	0.838	INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	25944612	3R_25944612_SNP [dm3] 3R_30118890_SNP [dm6]	T	C	2.750e^-4	0.838	INTRON sima	TF binding site mE1_TFBS_chinmo
3L	3557672	3L_3557672_DEL [dm3] 3L_3557672_DEL [dm6]	CCAC	C	2.755e^-4	0.838	INTRON Eip63E
2L	20353715	2L_20353715_SNP [dm3] 2L_20353715_SNP [dm6]	A	G	2.758e^-4	0.838	UPSTREAM RtGEF DOWNSTREAM snoRNA:Me28S-A3365 INTRON RtGEF	TF binding site BDTNP1_TFBS_twi
2L	19028185	2L_19028185_SNP [dm3] 2L_19028185_SNP [dm6]	T	C	2.760e^-4	0.838	INTRON Side
X	20215463	X_20215463_SNP [dm3] X_20344436_SNP [dm6]	A	C	2.776e^-4	0.838	INTERGENIC
2R	13565576	2R_13565576_SNP [dm3] 2R_17678071_SNP [dm6]	C	T	2.780e^-4	0.838	INTRON Sema-1b	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	18452869	2R_18452869_SNP [dm3] 2R_22565364_SNP [dm6]	A	T	2.781e^-4	0.838	INTRON dnr1	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	5112660	2R_5112660_SNP [dm3] 2R_9225155_SNP [dm6]	T	C	2.786e^-4	0.838	INTERGENIC
X	20159522	X_20159522_SNP [dm3] X_20288495_SNP [dm6]	C	T	2.787e^-4	0.838	INTERGENIC
3L	6972972	3L_6972972_SNP [dm3] 3L_6979872_SNP [dm6]	A	T	2.797e^-4	0.838	UTR_5_PRIME Galphai DOWNSTREAM CR32385	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4491478	2L_4491478_SNP [dm3] 2L_4491478_SNP [dm6]	G	A	2.805e^-4	0.838	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	14303572	3R_14303572_SNP [dm3] 3R_18477850_SNP [dm6]	T	G	2.806e^-4	0.838	INTRON fru
2L	7934499	2L_7934499_SNP [dm3] 2L_7934499_SNP [dm6]	C	G	2.810e^-4	0.838	INTRON Snoo
3L	7728697	3L_7728697_SNP [dm3] 3L_7735597_SNP [dm6]	C	T	2.813e^-4	0.838	INTRON CG32373 & 1 other
3L	7071913	3L_7071913_SNP [dm3] 3L_7078813_SNP [dm6]	A	C	2.813e^-4	0.838	INTERGENIC
3L	17248653	3L_17248653_SNP [dm3] 3L_17255553_SNP [dm6]	C	T	2.830e^-4	0.838	INTRON CR43870	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10321133	2R_10321133_SNP [dm3] 2R_14433628_SNP [dm6]	G	T	2.831e^-4	0.838	EXON CR45277	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
2L	14954308	2L_14954308_SNP [dm3] 2L_14954308_SNP [dm6]	G	C	2.833e^-4	0.838	INTRON CG42313
3R	8122545	3R_8122545_SNP [dm3] 3R_12296823_SNP [dm6]	C	A	2.836e^-4	0.838	DOWNSTREAM svp INTRON svp
3L	10267765	3L_10267765_SNP [dm3] 3L_10274665_SNP [dm6]	A	G	2.838e^-4	0.838	DOWNSTREAM Or67d INTERGENIC
2L	796332	2L_796332_SNP [dm3] 2L_796332_SNP [dm6]	A	G	2.841e^-4	0.838	INTERGENIC
3L	3563644	3L_3563644_SNP [dm3] 3L_3563644_SNP [dm6]	A	G	2.852e^-4	0.838	INTRON Eip63E
2R	16361205	2R_16361205_SNP [dm3] 2R_20473700_SNP [dm6]	T	G	2.853e^-4	0.838	INTRON CG12484
2L	4455631	2L_4455631_SNP [dm3] 2L_4455631_SNP [dm6]	G	A	2.860e^-4	0.838	SYNONYMOUS_CODING Gs1l DOWNSTREAM CG15434	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5546115	3L_5546115_INS [dm3] 3L_5553015_INS [dm6]	A	AA	2.860e^-4	0.838	INTERGENIC
2L	8494757	2L_8494757_SNP [dm3] 2L_8494757_SNP [dm6]	A	G	2.866e^-4	0.838	DOWNSTREAM Bace INTRON Dh31
3L	14923964	3L_14923964_SNP [dm3] 3L_14930864_SNP [dm6]	G	C	2.882e^-4	0.838	INTRON DCX-EMAP
2L	21914973	2L_21914973_SNP [dm3] 2L_21914973_SNP [dm6]	T	C	2.885e^-4	0.838	SPLICE_SITE_REGION CG31600 INTRON CG31600
X	19871464	X_19871464_SNP [dm3] X_19977431_SNP [dm6]	A	G	2.890e^-4	0.838	INTERGENIC
3L	3556650	3L_3556650_SNP [dm3] 3L_3556650_SNP [dm6]	G	A	2.894e^-4	0.838	INTRON Eip63E	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	5901812	2L_5901812_SNP [dm3] 2L_5901812_SNP [dm6]	A	C	2.906e^-4	0.838	INTERGENIC
X	3081043	X_3081043_SNP [dm3] X_3187010_SNP [dm6]	T	C	2.906e^-4	0.838	INTRON dnc
2R	11327910	2R_11327910_SNP [dm3] 2R_15440405_SNP [dm6]	T	C	2.907e^-4	0.838	INTRON CG43729
2R	18819064	2R_18819064_SNP [dm3] 2R_22931541_SNP [dm6]	C	T	2.909e^-4	0.838	SYNONYMOUS_CODING CG42678 UTR_3_PRIME CG42678 DOWNSTREAM CG3788
3R	4363255	3R_4363255_SNP [dm3] 3R_8537533_SNP [dm6]	A	G	2.911e^-4	0.838	INTERGENIC
3R	25009365	3R_25009365_SNP [dm3] 3R_29183643_SNP [dm6]	G	C	2.913e^-4	0.838	INTRON CG14509
2L	8204298	2L_8204298_SNP [dm3] 2L_8204298_SNP [dm6]	T	G	2.914e^-4	0.838	INTRON CR44119 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	19232230	X_19232230_SNP [dm3] X_19338197_SNP [dm6]	A	G	2.922e^-4	0.838	INTRON nAChRalpha7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_zfh1
X	19232233	X_19232233_SNP [dm3] X_19338200_SNP [dm6]	T	A	2.922e^-4	0.838	INTRON nAChRalpha7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_zfh1
2R	17809823	2R_17809823_SNP [dm3] 2R_21922318_SNP [dm6]	C	T	2.927e^-4	0.838	INTRON Fili
2R	17768035	2R_17768035_SNP [dm3] 2R_21880530_SNP [dm6]	C	T	2.927e^-4	0.838	DOWNSTREAM PpN58A INTRON Fili
3L	7467081	3L_7467081_SNP [dm3] 3L_7473981_SNP [dm6]	A	G	2.934e^-4	0.838	INTERGENIC
2R	20345617	2R_20345617_SNP [dm3] 2R_24458094_SNP [dm6]	G	T	2.939e^-4	0.838	INTRON CG13579
X	4274659	X_4274659_SNP [dm3] X_4380626_SNP [dm6]	T	G	2.943e^-4	0.838	UPSTREAM CG12688 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19871664	X_19871664_SNP [dm3] X_19977631_SNP [dm6]	C	G	2.943e^-4	0.838	INTERGENIC
2L	18652304	2L_18652304_SNP [dm3] 2L_18652304_SNP [dm6]	A	G	2.946e^-4	0.838	SYNONYMOUS_CODING Cyp310a1 INTRON MESR3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	743728	X_743728_SNP [dm3] X_849695_SNP [dm6]	C	T	2.956e^-4	0.838	INTRON CG43867
3R	3469607	3R_3469607_SNP [dm3] 3R_7643885_SNP [dm6]	C	T	2.957e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7467064	3L_7467064_SNP [dm3] 3L_7473964_SNP [dm6]	A	C	2.963e^-4	0.838	INTERGENIC
3L	5605300	3L_5605300_SNP [dm3] 3L_5612200_SNP [dm6]	A	C	2.964e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15619555	3L_15619555_SNP [dm3] 3L_15626455_SNP [dm6]	T	C	2.972e^-4	0.838	INTRON comm3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	14597551	3R_14597551_SNP [dm3] 3R_18771829_SNP [dm6]	T	G	2.973e^-4	0.838	INTRON CG7720
2R	20903569	2R_20903569_SNP [dm3] 2R_25016046_SNP [dm6]	T	A	2.983e^-4	0.838	INTRON uzip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	14153276	X_14153276_SNP [dm3] X_14259243_SNP [dm6]	T	G	2.984e^-4	0.838	DOWNSTREAM mud INTERGENIC
2R	13565637	2R_13565637_SNP [dm3] 2R_17678132_SNP [dm6]	T	C	2.987e^-4	0.838	INTRON Sema-1b	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	16737945	X_16737945_SNP [dm3] X_16843912_SNP [dm6]	G	A	3.001e^-4	0.838	UTR_5_PRIME RSG7 DOWNSTREAM CG13003	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16945021	2R_16945021_SNP [dm3] 2R_21057516_SNP [dm6]	A	C	3.004e^-4	0.838	UPSTREAM cpa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14932426	3L_14932426_SNP [dm3] 3L_14939326_SNP [dm6]	T	G	3.011e^-4	0.838	INTRON DCX-EMAP
3L	14204912	3L_14204912_SNP [dm3] 3L_14211812_SNP [dm6]	A	G	3.024e^-4	0.838	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
2L	12112873	2L_12112873_SNP [dm3] 2L_12112873_SNP [dm6]	G	T	3.024e^-4	0.838	DOWNSTREAM Phae2 INTERGENIC
2L	10790260	2L_10790260_SNP [dm3] 2L_10790260_SNP [dm6]	T	G	3.024e^-4	0.838	UTR_5_PRIME CG31870 INTRON CG31869
3L	11840943	3L_11840943_SNP [dm3] 3L_11847843_SNP [dm6]	T	G	3.031e^-4	0.838	UPSTREAM CG12521 INTERGENIC
3R	15973220	3R_15973220_SNP [dm3] 3R_20147498_SNP [dm6]	A	G	3.031e^-4	0.838	INTERGENIC
3R	5878383	3R_5878383_SNP [dm3] 3R_10052661_SNP [dm6]	G	T	3.034e^-4	0.838	UPSTREAM Npc2e DOWNSTREAM CR44192 INTRON Fancl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10449226	2R_10449226_SNP [dm3] 2R_14561721_SNP [dm6]	G	C	3.047e^-4	0.838	INTRON ttv
2R	21079264	2R_21079264_SNP [dm3] 2R_25191741_SNP [dm6]	A	T	3.051e^-4	0.838	INTRON CG9380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16543983	2R_16543983_SNP [dm3] 2R_20656478_SNP [dm6]	C	A	3.052e^-4	0.838	NON_SYNONYMOUS_CODING CG11159 INTRON Lrt	TF binding site mE1_TFBS_cad
3R	15171827	3R_15171827_SNP [dm3] 3R_19346105_SNP [dm6]	C	T	3.054e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	2254928	X_2254928_DEL [dm3] X_2360895_DEL [dm6]	TT	T	3.056e^-4	0.838	INTRON ptr
3R	25106476	3R_25106476_SNP [dm3] 3R_29280754_SNP [dm6]	T	G	3.062e^-4	0.838	INTERGENIC	regulatory region REDfly_CRMs
2L	8993648	2L_8993648_SNP [dm3] 2L_8993648_SNP [dm6]	T	A	3.064e^-4	0.838	UPSTREAM CG17906 DOWNSTREAM alien & 1 other INTERGENIC
3L	5546069	3L_5546069_SNP [dm3] 3L_5552969_SNP [dm6]	G	T	3.065e^-4	0.838	INTERGENIC
3L	3558308	3L_3558308_SNP [dm3] 3L_3558308_SNP [dm6]	T	A	3.070e^-4	0.838	INTRON Eip63E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22765297	3R_22765297_INS [dm3] 3R_26939575_INS [dm6]	A	ATTAAC	3.071e^-4	0.838	INTRON sda
3R	22765299	3R_22765299_DEL [dm3] 3R_26939577_DEL [dm6]	ATAATTGG	A	3.071e^-4	0.838	INTRON sda
2R	14825373	2R_14825373_SNP [dm3] 2R_18937868_SNP [dm6]	C	A	3.077e^-4	0.838	INTRON sano
2R	20196040	2R_20196040_SNP [dm3] 2R_24308517_SNP [dm6]	T	C	3.082e^-4	0.838	INTRON betaTub60D	regulatory region REDfly_CRMs
2L	2743845	2L_2743845_SNP [dm3] 2L_2743845_SNP [dm6]	A	G	3.085e^-4	0.838	SYNONYMOUS_CODING CG9961 UTR_3_PRIME CG9961 DOWNSTREAM Hrs	TF binding site mE1_TFBS_sens
3R	14127616	3R_14127616_SNP [dm3] 3R_18301894_SNP [dm6]	G	A	3.085e^-4	0.838	UPSTREAM CG18600 DOWNSTREAM CG7126 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	21923545	3R_21923545_SNP [dm3] 3R_26097823_SNP [dm6]	T	C	3.089e^-4	0.838	INTRON dys	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cnc
3R	10625158	3R_10625158_SNP [dm3] 3R_14799436_SNP [dm6]	A	G	3.090e^-4	0.838	DOWNSTREAM CG14855 INTRON CG14856	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3868382	X_3868382_SNP [dm3] X_3974349_SNP [dm6]	C	G	3.090e^-4	0.838	INTERGENIC
2L	21962090	2L_21962090_SNP [dm3] 2L_21962090_SNP [dm6]	A	G	3.090e^-4	0.838	INTERGENIC
2L	7934991	2L_7934991_SNP [dm3] 2L_7934991_SNP [dm6]	G	T	3.098e^-4	0.838	INTRON Snoo
X	12144995	X_12144995_SNP [dm3] X_12250962_SNP [dm6]	A	T	3.106e^-4	0.838	INTRON Ten-a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	27129280	3R_27129280_SNP [dm3] 3R_31303558_SNP [dm6]	A	G	3.125e^-4	0.838	SYNONYMOUS_CODING CG11340	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12589087	3R_12589087_DEL [dm3] 3R_16763365_DEL [dm6]	TT	T	3.128e^-4	0.838	DOWNSTREAM tre-3 & 1 other INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	17319902	2L_17319902_SNP [dm3] 2L_17319902_SNP [dm6]	T	G	3.128e^-4	0.838	UPSTREAM CR45696 DOWNSTREAM CG45691 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	20332397	2L_20332397_SNP [dm3] 2L_20332397_SNP [dm6]	C	T	3.132e^-4	0.838	INTRON spir
X	18645726	X_18645726_SNP [dm3] X_18751693_SNP [dm6]	T	C	3.143e^-4	0.838	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20262200	X_20262200_SNP [dm3] X_20391173_SNP [dm6]	G	A	3.150e^-4	0.838	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22204118	X_22204118_SNP [dm3] X_22802282_SNP [dm6]	T	C	3.151e^-4	0.838	INTERGENIC
2R	3533519	2R_3533519_SNP [dm3] 2R_7646014_SNP [dm6]	C	A	3.175e^-4	0.838	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340
2L	22098331	2L_22098331_SNP [dm3] 2L_22098331_SNP [dm6]	T	A	3.178e^-4	0.838	INTERGENIC
X	12144425	X_12144425_SNP [dm3] X_12250392_SNP [dm6]	C	T	3.183e^-4	0.838	INTRON Ten-a
2L	17993873	2L_17993873_SNP [dm3] 2L_17993873_SNP [dm6]	T	G	3.184e^-4	0.838	EXON CR44767
3R	5878395	3R_5878395_SNP [dm3] 3R_10052673_SNP [dm6]	A	G	3.185e^-4	0.838	UPSTREAM Npc2e DOWNSTREAM CR44192 INTRON Fancl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12891160	X_12891160_SNP [dm3] X_12997127_SNP [dm6]	C	T	3.191e^-4	0.838	INTRON rad
3L	2585487	3L_2585487_SNP [dm3] 3L_2585487_SNP [dm6]	T	A	3.196e^-4	0.838	INTRON msn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17317605	2R_17317605_SNP [dm3] 2R_21430100_SNP [dm6]	C	A	3.214e^-4	0.838	INTRON Sdc
3L	5130756	3L_5130756_SNP [dm3] 3L_5137656_SNP [dm6]	G	T	3.221e^-4	0.838	SYNONYMOUS_CODING CG4611 DOWNSTREAM Prpk	TF binding site mE1_TFBS_chinmo
3L	1433142	3L_1433142_SNP [dm3] 3L_1433142_SNP [dm6]	C	T	3.229e^-4	0.838	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	504018	2R_504018_SNP [dm3] 2R_4616513_SNP [dm6]	A	T	3.229e^-4	0.838	INTERGENIC	transposable element FlyBase
2L	12111720	2L_12111720_SNP [dm3] 2L_12111720_SNP [dm6]	T	A	3.230e^-4	0.838	SYNONYMOUS_CODING Phae2	TF binding site mE1_TFBS_cad
2L	4361994	2L_4361994_SNP [dm3] 2L_4361994_SNP [dm6]	A	G	3.231e^-4	0.838	UTR_5_PRIME Traf4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	5645675	3R_5645675_INS [dm3] 3R_9819953_INS [dm6]	G	GGG	3.239e^-4	0.838	UPSTREAM CG9458 DOWNSTREAM CG42857 INTERGENIC
3L	4082330	3L_4082330_SNP [dm3] 3L_4082330_SNP [dm6]	C	T	3.245e^-4	0.838	INTRON Gad1
X	2254909	X_2254909_DEL [dm3] X_2360876_DEL [dm6]	TTTT	T	3.254e^-4	0.838	INTRON ptr
2L	3825948	2L_3825948_SNP [dm3] 2L_3825948_SNP [dm6]	G	T	3.264e^-4	0.838	SYNONYMOUS_CODING slp1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11973850	2R_11973850_DEL [dm3] 2R_16086345_DEL [dm6]	TT	T	3.265e^-4	0.838	INTRON Dg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19908317	X_19908317_DEL [dm3] X_20014284_DEL [dm6]	ATTTAGTATTACCATA...	A	3.270e^-4	0.838	UPSTREAM Dop2R INTRON Dop2R
2R	11867832	2R_11867832_SNP [dm3] 2R_15980327_SNP [dm6]	C	T	3.271e^-4	0.838	SYNONYMOUS_CODING Strn-Mlck
3L	7890632	3L_7890632_SNP [dm3] 3L_7897532_SNP [dm6]	G	A	3.285e^-4	0.838	SYNONYMOUS_CODING pbl
2L	6019580	2L_6019580_SNP [dm3] 2L_6019580_SNP [dm6]	G	C	3.293e^-4	0.838	UPSTREAM H2.0 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	584100	X_584100_SNP [dm3] X_690067_SNP [dm6]	C	G	3.303e^-4	0.838	INTRON sdk	TF binding site BDTNP1_TFBS_da
X	20215587	X_20215587_SNP [dm3] X_20344560_SNP [dm6]	C	T	3.306e^-4	0.838	INTERGENIC
3L	23953546	3L_23953546_SNP [dm3] 3L_23960446_SNP [dm6]	C	A	3.317e^-4	0.838	INTRON CG40470
2L	1285591	2L_1285591_SNP [dm3] 2L_1285591_SNP [dm6]	C	T	3.320e^-4	0.838	SYNONYMOUS_CODING robo3
3R	20720568	3R_20720568_SNP [dm3] 3R_24894846_SNP [dm6]	T	C	3.326e^-4	0.838	UPSTREAM CG31121 INTRON CG11069	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	7812526	2R_7812526_SNP [dm3] 2R_11925021_SNP [dm6]	G	C	3.329e^-4	0.838	INTERGENIC
3L	6389840	3L_6389840_DEL [dm3] 3L_6396740_DEL [dm6]	TT	T	3.330e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14923965	3L_14923965_SNP [dm3] 3L_14930865_SNP [dm6]	T	C	3.335e^-4	0.838	INTRON DCX-EMAP
2L	15090500	2L_15090500_SNP [dm3] 2L_15090500_SNP [dm6]	T	A	3.337e^-4	0.838	INTRON CG15270
3L	332433	3L_332433_SNP [dm3] 3L_332433_SNP [dm6]	A	G	3.339e^-4	0.838	UPSTREAM mthl9 DOWNSTREAM mthl10 INTRON Ptpmeg	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	17978686	2R_17978686_SNP [dm3] 2R_22091181_SNP [dm6]	A	G	3.346e^-4	0.838	NON_SYNONYMOUS_CODING CG44163 UPSTREAM CG43393 DOWNSTREAM CG11073
3R	10625161	3R_10625161_SNP [dm3] 3R_14799439_SNP [dm6]	T	A	3.349e^-4	0.838	DOWNSTREAM CG14855 INTRON CG14856	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15859506	3L_15859506_SNP [dm3] 3L_15866406_SNP [dm6]	T	C	3.354e^-4	0.838	INTRON pHCl
2L	9597137	2L_9597137_SNP [dm3] 2L_9597137_SNP [dm6]	T	C	3.355e^-4	0.838	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	9571394	2L_9571394_SNP [dm3] 2L_9571394_SNP [dm6]	G	A	3.357e^-4	0.838	UTR_5_PRIME CG3838 INTRON CG3838
X	743412	X_743412_SNP [dm3] X_849379_SNP [dm6]	A	G	3.361e^-4	0.838	INTRON CG43867
X	598373	X_598373_SNP [dm3] X_704340_SNP [dm6]	G	A	3.375e^-4	0.838	INTRON sdk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	24032490	3L_24032490_SNP [dm3] 3L_24039390_SNP [dm6]	C	T	3.376e^-4	0.838	INTERGENIC
2R	8132346	2R_8132346_SNP [dm3] 2R_12244841_SNP [dm6]	C	T	3.377e^-4	0.838	UPSTREAM CG43244 INTERGENIC
3L	7485366	3L_7485366_SNP [dm3] 3L_7492266_SNP [dm6]	A	T	3.382e^-4	0.838	NON_SYNONYMOUS_CODING Cyp316a1
3L	13557427	3L_13557427_INS [dm3] 3L_13564327_INS [dm6]	G	TA	3.389e^-4	0.838	INTRON bru-3
3L	13557430	3L_13557430_DEL [dm3] 3L_13564330_DEL [dm6]	GTTT	G	3.389e^-4	0.838	INTRON bru-3
3R	10805466	3R_10805466_SNP [dm3] 3R_14979744_SNP [dm6]	G	C	3.400e^-4	0.838	INTERGENIC
3R	16294728	3R_16294728_SNP [dm3] 3R_20469006_SNP [dm6]	C	T	3.400e^-4	0.838	INTRON Gfrl
2R	11081127	2R_11081127_SNP [dm3] 2R_15193622_SNP [dm6]	T	C	3.401e^-4	0.838	UPSTREAM Sfp51E DOWNSTREAM CG43829 INTERGENIC
2R	13659328	2R_13659328_SNP [dm3] 2R_17771823_SNP [dm6]	T	C	3.407e^-4	0.838	INTRON CG6362	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26068611	3R_26068611_SNP [dm3] 3R_30242889_SNP [dm6]	A	G	3.421e^-4	0.838	SYNONYMOUS_CODING CG9737
3R	21599500	3R_21599500_SNP [dm3] 3R_25773778_SNP [dm6]	T	C	3.423e^-4	0.838	NON_SYNONYMOUS_CODING CG17198 UTR_3_PRIME CG17197
3R	18477576	3R_18477576_SNP [dm3] 3R_22651854_SNP [dm6]	A	G	3.425e^-4	0.838	INTRON CG45058
3L	6573306	3L_6573306_SNP [dm3] 3L_6580206_SNP [dm6]	G	C	3.427e^-4	0.838	INTRON CG18769 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20885550	3R_20885550_INS [dm3] 3R_25059828_INS [dm6]	A	AT	3.429e^-4	0.838	INTRON Unc-13-4B
2R	20196142	2R_20196142_SNP [dm3] 2R_24308619_SNP [dm6]	T	G	3.429e^-4	0.838	INTRON betaTub60D	regulatory region REDfly_CRMs
3L	8176247	3L_8176247_SNP [dm3] 3L_8183147_SNP [dm6]	T	A	3.439e^-4	0.838	UTR_3_PRIME CG7979 DOWNSTREAM ERR
3R	21845761	3R_21845761_INS [dm3] 3R_26020039_INS [dm6]	A	AA	3.444e^-4	0.838	UPSTREAM CR43643 DOWNSTREAM CR43644 INTERGENIC
2L	4087358	2L_4087358_SNP [dm3] 2L_4087358_SNP [dm6]	T	C	3.452e^-4	0.838	INTRON ed
3L	8178310	3L_8178310_SNP [dm3] 3L_8185210_SNP [dm6]	A	G	3.456e^-4	0.838	INTRON ERR	TF binding site mE1_TFBS_sens
3R	2868311	3R_2868311_INS [dm3] 3R_7042589_INS [dm6]	C	CGGA	3.459e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	14984423	2R_14984423_SNP [dm3] 2R_19096918_SNP [dm6]	A	C	3.462e^-4	0.838	UPSTREAM Ir56a INTRON 5-HT1A
X	4274654	X_4274654_SNP [dm3] X_4380621_SNP [dm6]	T	C	3.465e^-4	0.838	UPSTREAM CG12688 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	13345284	2L_13345284_INS [dm3] 2L_13345284_INS [dm6]	T	TTAT	3.466e^-4	0.838	INTERGENIC
2L	6019582	2L_6019582_MNP [dm3] 2L_6019582_MNP [dm6]	TCG	GAA	3.470e^-4	0.838	UPSTREAM H2.0 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2185953	3L_2185953_SNP [dm3] 3L_2185953_SNP [dm6]	G	A	3.481e^-4	0.838	UTR_5_PRIME CG13810	TF binding site BDTNP1_TFBS_twi
3L	1487948	3L_1487948_SNP [dm3] 3L_1487948_SNP [dm6]	A	G	3.485e^-4	0.838	UPSTREAM CR43701 & 1 other INTRON stet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad
3R	5785958	3R_5785958_SNP [dm3] 3R_9960236_SNP [dm6]	T	C	3.486e^-4	0.838	INTRON Glut4EF
2L	3127602	2L_3127602_SNP [dm3] 2L_3127602_SNP [dm6]	G	A	3.489e^-4	0.838	SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19079203	2L_19079203_SNP [dm3] 2L_19079203_SNP [dm6]	C	T	3.491e^-4	0.838	UPSTREAM CG10700 DOWNSTREAM Lim3 INTERGENIC
2R	10332101	2R_10332101_SNP [dm3] 2R_14444596_SNP [dm6]	G	C	3.497e^-4	0.838	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2596450	3L_2596450_SNP [dm3] 3L_2596450_SNP [dm6]	G	A	3.499e^-4	0.838	SYNONYMOUS_CODING CG16984 UTR_3_PRIME CG12182 DOWNSTREAM dos & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24727422	3R_24727422_SNP [dm3] 3R_28901700_SNP [dm6]	G	A	3.508e^-4	0.838	UPSTREAM Doa INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9113305	2R_9113305_SNP [dm3] 2R_13225800_SNP [dm6]	T	C	3.510e^-4	0.838	INTRON Dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	14388983	3R_14388983_SNP [dm3] 3R_18563261_SNP [dm6]	T	A	3.511e^-4	0.838	INTERGENIC
3R	14606267	3R_14606267_SNP [dm3] 3R_18780545_SNP [dm6]	A	T	3.514e^-4	0.838	UPSTREAM CG7720 INTRON CG7720	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15902342	2R_15902342_SNP [dm3] 2R_20014837_SNP [dm6]	A	G	3.528e^-4	0.838	DOWNSTREAM CR44629 INTERGENIC
2R	6951426	2R_6951426_SNP [dm3] 2R_11063921_SNP [dm6]	C	G	3.530e^-4	0.838	INTRON luna	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	13256731	X_13256731_SNP [dm3] X_13362698_SNP [dm6]	C	T	3.538e^-4	0.838	INTRON Syt12
2R	16965119	2R_16965119_SNP [dm3] 2R_21077614_SNP [dm6]	C	G	3.547e^-4	0.838	INTRON Treh
3L	4787859	3L_4787859_SNP [dm3] 3L_4787859_SNP [dm6]	T	A	3.556e^-4	0.838	INTRON RhoGEF64C
2R	5103025	2R_5103025_SNP [dm3] 2R_9215520_SNP [dm6]	C	G	3.563e^-4	0.838	DOWNSTREAM CR44451 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	7622137	X_7622137_SNP [dm3] X_7728104_SNP [dm6]	A	T	3.564e^-4	0.838	UPSTREAM CG12155 INTRON NELF-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	7935065	2L_7935065_SNP [dm3] 2L_7935065_SNP [dm6]	T	C	3.571e^-4	0.838	INTRON Snoo
2R	8133499	2R_8133499_DEL [dm3] 2R_12245994_DEL [dm6]	CTC	C	3.578e^-4	0.838	DOWNSTREAM CR44315 INTERGENIC
3L	24020609	3L_24020609_SNP [dm3] 3L_24027509_SNP [dm6]	A	C	3.586e^-4	0.838	INTERGENIC
2L	1893128	2L_1893128_SNP [dm3] 2L_1893128_SNP [dm6]	G	C	3.593e^-4	0.838	INTRON CG7337
3R	17894646	3R_17894646_SNP [dm3] 3R_22068924_SNP [dm6]	A	G	3.599e^-4	0.838	INTRON how
2L	21913716	2L_21913716_SNP [dm3] 2L_21913716_SNP [dm6]	A	T	3.600e^-4	0.838	DOWNSTREAM CG31600 INTERGENIC
3L	9718027	3L_9718027_SNP [dm3] 3L_9724927_SNP [dm6]	G	A	3.602e^-4	0.838	SYNONYMOUS_CODING defl	TF binding site mE1_TFBS_cad
3L	15483209	3L_15483209_SNP [dm3] 3L_15490109_SNP [dm6]	A	G	3.605e^-4	0.838	INTERGENIC
3L	6721236	3L_6721236_SNP [dm3] 3L_6728136_SNP [dm6]	C	A	3.610e^-4	0.838	UPSTREAM CR45417 DOWNSTREAM dikar INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4216977	2L_4216977_SNP [dm3] 2L_4216977_SNP [dm6]	C	T	3.614e^-4	0.838	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	14153437	X_14153437_DEL [dm3] X_14259404_DEL [dm6]	TTCTAATCCGATTAGA...	T	3.616e^-4	0.838	DOWNSTREAM mud INTERGENIC
X	9390914	X_9390914_SNP [dm3] X_9496881_SNP [dm6]	G	A	3.621e^-4	0.838	UPSTREAM mgl INTRON mgl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	13608555	X_13608555_SNP [dm3] X_13714522_SNP [dm6]	T	C	3.622e^-4	0.838	DOWNSTREAM NnaD INTRON CG9940 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	27127972	3R_27127972_SNP [dm3] 3R_31302250_SNP [dm6]	T	A	3.623e^-4	0.838	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_inv
3R	7365104	3R_7365104_SNP [dm3] 3R_11539382_SNP [dm6]	G	A	3.623e^-4	0.838	INTRON dpr4	TF binding site mE1_TFBS_inv
X	14153435	X_14153435_SNP [dm3] X_14259402_SNP [dm6]	G	T	3.629e^-4	0.838	DOWNSTREAM mud INTERGENIC
3R	26864084	3R_26864084_SNP [dm3] 3R_31038362_SNP [dm6]	T	C	3.630e^-4	0.838	INTERGENIC
2L	15120130	2L_15120130_SNP [dm3] 2L_15120130_SNP [dm6]	C	G	3.637e^-4	0.838	EXON CR43853
2R	16965120	2R_16965120_DEL [dm3] 2R_21077615_DEL [dm6]	AATA	A	3.641e^-4	0.838	INTRON Treh
2R	17859704	2R_17859704_SNP [dm3] 2R_21972199_SNP [dm6]	A	G	3.641e^-4	0.838	UPSTREAM CG34029 & 1 other INTERGENIC
2L	1154723	2L_1154723_SNP [dm3] 2L_1154723_SNP [dm6]	C	T	3.644e^-4	0.838	NON_SYNONYMOUS_CODING capt INTRON capt	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7307081	2L_7307081_SNP [dm3] 2L_7307081_SNP [dm6]	C	T	3.646e^-4	0.838	UPSTREAM wg INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17624557	3R_17624557_SNP [dm3] 3R_21798835_SNP [dm6]	T	G	3.647e^-4	0.838	UPSTREAM mir-999 & 1 other INTRON CASK
2L	19628932	2L_19628932_SNP [dm3] 2L_19628932_SNP [dm6]	C	A	3.648e^-4	0.838	INTRON Lar
2R	16880111	2R_16880111_SNP [dm3] 2R_20992606_SNP [dm6]	C	T	3.648e^-4	0.838	SYNONYMOUS_CODING dgt3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	18646257	2R_18646257_SNP [dm3] 2R_22758752_SNP [dm6]	G	T	3.652e^-4	0.838	NON_SYNONYMOUS_CODING CG42260 EXON CR30267
3L	11766341	3L_11766341_SNP [dm3] 3L_11773241_SNP [dm6]	C	G	3.652e^-4	0.838	DOWNSTREAM mir-956 & 2 others INTERGENIC
2R	7945612	2R_7945612_INS [dm3] 2R_12058107_INS [dm6]	A	AA	3.657e^-4	0.838	INTRON Drep-3
X	1317091	X_1317091_SNP [dm3] X_1423058_SNP [dm6]	A	G	3.660e^-4	0.838	INTRON futsch
2L	16239398	2L_16239398_SNP [dm3] 2L_16239398_SNP [dm6]	T	C	3.672e^-4	0.838	SYNONYMOUS_CODING CG42817
2R	19443694	2R_19443694_SNP [dm3] 2R_23556171_SNP [dm6]	T	G	3.673e^-4	0.838	UTR_5_PRIME Rrp4 UPSTREAM ItgalphaPS5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	24042907	3L_24042907_DEL [dm3] 3L_24049807_DEL [dm6]	ACAACTTAAAATGACTCTAT...	A	3.674e^-4	0.838	INTERGENIC
3L	3555400	3L_3555400_SNP [dm3] 3L_3555400_SNP [dm6]	C	T	3.675e^-4	0.838	INTRON Eip63E	TF binding site mE1_TFBS_sens
2R	20908416	2R_20908416_SNP [dm3] 2R_25020893_SNP [dm6]	G	A	3.680e^-4	0.838	INTRON uzip
2L	12682601	2L_12682601_SNP [dm3] 2L_12682601_SNP [dm6]	A	T	3.681e^-4	0.838	INTRON pdm2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	24726597	3R_24726597_SNP [dm3] 3R_28900875_SNP [dm6]	G	A	3.689e^-4	0.838	SYNONYMOUS_CODING Doa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3112492	2L_3112492_SNP [dm3] 2L_3112492_SNP [dm6]	T	A	3.696e^-4	0.838	UPSTREAM toc INTRON toc
2R	5101736	2R_5101736_SNP [dm3] 2R_9214231_SNP [dm6]	G	A	3.698e^-4	0.838	DOWNSTREAM CR45309 EXON CR44451
3L	4841144	3L_4841144_SNP [dm3] 3L_4841144_SNP [dm6]	C	T	3.700e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	16965135	2R_16965135_SNP [dm3] 2R_21077630_SNP [dm6]	C	T	3.702e^-4	0.838	INTRON Treh
3L	12213689	3L_12213689_SNP [dm3] 3L_12220589_SNP [dm6]	C	A	3.706e^-4	0.838	UTR_5_PRIME app
3L	14370112	3L_14370112_SNP [dm3] 3L_14377012_SNP [dm6]	C	A	3.708e^-4	0.838	INTERGENIC
3L	11370241	3L_11370241_SNP [dm3] 3L_11377141_SNP [dm6]	T	C	3.731e^-4	0.838	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
3L	19257198	3L_19257198_DEL [dm3] 3L_19264098_DEL [dm6]	TAA	T	3.734e^-4	0.838	UTR_5_PRIME Max UPSTREAM CG9666 & 1 other INTRON CG9666 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	15291616	X_15291616_SNP [dm3] X_15397583_SNP [dm6]	G	A	3.736e^-4	0.838	SPLICE_SITE_REGION Cngl INTRON Cngl	TF binding site mE1_TFBS_chinmo
3R	1789666	3R_1789666_SNP [dm3] 3R_5963944_SNP [dm6]	G	C	3.740e^-4	0.838	INTERGENIC
2L	7057433	2L_7057433_SNP [dm3] 2L_7057433_SNP [dm6]	C	T	3.741e^-4	0.838	SYNONYMOUS_CODING Mnn1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19473637	2R_19473637_SNP [dm3] 2R_23586114_SNP [dm6]	G	A	3.744e^-4	0.838	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
3R	14615291	3R_14615291_SNP [dm3] 3R_18789569_SNP [dm6]	A	C	3.749e^-4	0.838	INTRON CG7720	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14510324	2R_14510324_SNP [dm3] 2R_18622819_SNP [dm6]	C	A	3.750e^-4	0.838	SYNONYMOUS_CODING CG5335 INTRON Atg7	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15176788	3R_15176788_SNP [dm3] 3R_19351066_SNP [dm6]	T	A	3.754e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21900442	3R_21900442_SNP [dm3] 3R_26074720_SNP [dm6]	A	G	3.756e^-4	0.838	INTERGENIC
3L	7296139	3L_7296139_DEL [dm3] 3L_7303039_DEL [dm6]	AA	A	3.758e^-4	0.838	INTRON unc-13-4A
2R	12570661	2R_12570661_SNP [dm3] 2R_16683156_SNP [dm6]	A	G	3.765e^-4	0.838	INTRON CG30463
2R	15197848	2R_15197848_SNP [dm3] 2R_19310343_SNP [dm6]	C	T	3.768e^-4	0.838	DOWNSTREAM Rgk1 INTRON EndoB	TF binding site mE1_TFBS_sens
2L	7937633	2L_7937633_SNP [dm3] 2L_7937633_SNP [dm6]	G	C	3.779e^-4	0.838	INTRON Snoo
3L	17248616	3L_17248616_SNP [dm3] 3L_17255516_SNP [dm6]	T	C	3.785e^-4	0.838	INTRON CR43870	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10699766	3L_10699766_DEL [dm3] 3L_10706666_DEL [dm6]	AAATCTAAAAATATTAAACC...	A	3.788e^-4	0.838	INTERGENIC
3L	10699790	3L_10699790_DEL [dm3] 3L_10706690_DEL [dm6]	GAAAAC	G	3.788e^-4	0.838	INTERGENIC
X	21116794	X_21116794_DEL [dm3] X_21245767_DEL [dm6]	AATGCA	A	3.789e^-4	0.838	INTRON CG32521
3R	14302608	3R_14302608_SNP [dm3] 3R_18476886_SNP [dm6]	G	C	3.793e^-4	0.838	INTRON fru
2L	15429462	2L_15429462_SNP [dm3] 2L_15429462_SNP [dm6]	C	G	3.794e^-4	0.838	INTERGENIC
X	584084	X_584084_SNP [dm3] X_690051_SNP [dm6]	G	T	3.796e^-4	0.838	INTRON sdk	TF binding site BDTNP1_TFBS_da
2R	13546908	2R_13546908_DEL [dm3] 2R_17659403_DEL [dm6]	TTAAGT	T	3.796e^-4	0.838	INTRON CCHa1-R
2R	10004746	2R_10004746_SNP [dm3] 2R_14117241_SNP [dm6]	C	A	3.808e^-4	0.838	INTRON Prosap
3R	17829293	3R_17829293_SNP [dm3] 3R_22003571_SNP [dm6]	T	G	3.810e^-4	0.838	INTRON Eip93F
2L	9358486	2L_9358486_SNP [dm3] 2L_9358486_SNP [dm6]	G	A	3.815e^-4	0.838	INTERGENIC
2L	16547838	2L_16547838_SNP [dm3] 2L_16547838_SNP [dm6]	G	A	3.816e^-4	0.838	INTRON CG42389	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	18103554	3L_18103554_SNP [dm3] 3L_18110454_SNP [dm6]	T	C	3.818e^-4	0.838	SYNONYMOUS_CODING mus304 UPSTREAM CG5147	TF binding site mE1_TFBS_inv
2L	1854841	2L_1854841_SNP [dm3] 2L_1854841_SNP [dm6]	A	G	3.824e^-4	0.838	INTRON wry	TF binding site mE1_TFBS_chinmo
3R	20203708	3R_20203708_SNP [dm3] 3R_24377986_SNP [dm6]	C	T	3.826e^-4	0.838	DOWNSTREAM CG33342 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10811113	3R_10811113_SNP [dm3] 3R_14985391_SNP [dm6]	G	A	3.827e^-4	0.838	INTERGENIC
X	21298265	X_21298265_SNP [dm3] X_21427238_SNP [dm6]	T	C	3.829e^-4	0.838	INTRON CG42343
2R	18767823	2R_18767823_SNP [dm3] 2R_22880300_SNP [dm6]	C	T	3.830e^-4	0.838	INTRON PIP5K59B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18649908	2R_18649908_SNP [dm3] 2R_22762403_SNP [dm6]	A	G	3.834e^-4	0.838	INTRON CG42260	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9464811	2R_9464811_DEL [dm3] 2R_13577306_DEL [dm6]	TG	T	3.843e^-4	0.838	UPSTREAM CR44366 EXON CR44365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Dll
3R	27086273	3R_27086273_SNP [dm3] 3R_31260551_SNP [dm6]	C	T	3.845e^-4	0.838	DOWNSTREAM CG3669 INTRON CG18672
2R	11802001	2R_11802001_SNP [dm3] 2R_15914496_SNP [dm6]	A	G	3.852e^-4	0.838	INTRON sli	TF binding site mE1_TFBS_cad
3R	24728203	3R_24728203_SNP [dm3] 3R_28902481_SNP [dm6]	G	A	3.866e^-4	0.838	UPSTREAM Doa INTRON Doa
2R	19438380	2R_19438380_SNP [dm3] 2R_23550857_SNP [dm6]	A	C	3.871e^-4	0.838	SYNONYMOUS_CODING pita UPSTREAM Dcp-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8137156	2R_8137156_SNP [dm3] 2R_12249651_SNP [dm6]	T	C	3.877e^-4	0.838	INTERGENIC
3R	13979182	3R_13979182_SNP [dm3] 3R_18153460_SNP [dm6]	T	C	3.885e^-4	0.838	NON_SYNONYMOUS_CODING CG14316 SPLICE_SITE_REGION CG14316
2R	10345297	2R_10345297_SNP [dm3] 2R_14457792_SNP [dm6]	G	T	3.896e^-4	0.838	UPSTREAM Oaz INTRON Oaz	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	19785512	3R_19785512_INS [dm3] 3R_23959790_INS [dm6]	G	GT	3.899e^-4	0.838	INTRON AP-1sigma
3R	14615289	3R_14615289_SNP [dm3] 3R_18789567_SNP [dm6]	G	A	3.901e^-4	0.838	INTRON CG7720	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2320643	3L_2320643_SNP [dm3] 3L_2320643_SNP [dm6]	T	C	3.907e^-4	0.838	UPSTREAM CR45426 INTERGENIC
2R	7045208	2R_7045208_SNP [dm3] 2R_11157703_SNP [dm6]	C	A	3.908e^-4	0.838	INTRON CG13229
3R	18854222	3R_18854222_SNP [dm3] 3R_23028500_SNP [dm6]	C	T	3.909e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14926532	3L_14926532_DEL [dm3] 3L_14933432_DEL [dm6]	AACGAAA	A	3.914e^-4	0.838	INTRON DCX-EMAP
3L	24036674	3L_24036674_SNP [dm3] 3L_24043574_SNP [dm6]	C	T	3.919e^-4	0.838	INTERGENIC
2R	5050714	2R_5050714_SNP [dm3] 2R_9163209_SNP [dm6]	A	C	3.924e^-4	0.838	NON_SYNONYMOUS_CODING CG8046	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21117324	X_21117324_SNP [dm3] X_21246297_SNP [dm6]	T	G	3.924e^-4	0.838	INTRON CG32521
2R	3956647	2R_3956647_SNP [dm3] 2R_8069142_SNP [dm6]	C	T	3.925e^-4	0.838	UPSTREAM lig INTRON lig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	18649804	2R_18649804_DEL [dm3] 2R_22762299_DEL [dm6]	CATATTGACC	C	3.927e^-4	0.838	INTRON CG42260	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7848334	3L_7848334_SNP [dm3] 3L_7855234_SNP [dm6]	C	T	3.945e^-4	0.838	UTR_5_PRIME Pdp1 INTRON Pdp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	5177863	3L_5177863_SNP [dm3] 3L_5184763_SNP [dm6]	G	A	3.946e^-4	0.838	UTR_5_PRIME shep INTRON shep	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	15483205	3L_15483205_SNP [dm3] 3L_15490105_SNP [dm6]	G	A	3.947e^-4	0.838	INTERGENIC
3L	14923949	3L_14923949_SNP [dm3] 3L_14930849_SNP [dm6]	G	A	3.949e^-4	0.838	INTRON DCX-EMAP
3L	9716504	3L_9716504_SNP [dm3] 3L_9723404_SNP [dm6]	G	T	3.956e^-4	0.838	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10267753	3L_10267753_SNP [dm3] 3L_10274653_SNP [dm6]	T	A	3.969e^-4	0.838	DOWNSTREAM Or67d INTERGENIC
X	14121437	X_14121437_SNP [dm3] X_14227404_SNP [dm6]	T	C	3.970e^-4	0.838	SYNONYMOUS_CODING mRpL38 DOWNSTREAM CG42271	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13610291	2L_13610291_SNP [dm3] 2L_13610291_SNP [dm6]	C	T	3.975e^-4	0.838	NON_SYNONYMOUS_CODING kuz DOWNSTREAM mir-2489
X	20218412	X_20218412_SNP [dm3] X_20347385_SNP [dm6]	T	A	3.976e^-4	0.838	INTERGENIC
3L	5891925	3L_5891925_SNP [dm3] 3L_5898825_SNP [dm6]	A	T	3.980e^-4	0.838	SYNONYMOUS_CODING CG5592 UPSTREAM CG32409	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13357010	3R_13357010_SNP [dm3] 3R_17531288_SNP [dm6]	C	T	3.981e^-4	0.838	INTERGENIC
X	2953171	X_2953171_SNP [dm3] X_3059138_SNP [dm6]	C	T	3.986e^-4	0.838	INTRON kirre
X	21116801	X_21116801_SNP [dm3] X_21245774_SNP [dm6]	T	C	3.989e^-4	0.838	INTRON CG32521
3L	7724905	3L_7724905_SNP [dm3] 3L_7731805_SNP [dm6]	G	T	3.991e^-4	0.838	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_chinmo
X	20276949	X_20276949_SNP [dm3] X_20405922_SNP [dm6]	G	A	3.992e^-4	0.838	SYNONYMOUS_CODING HERC2	TF binding site mE1_TFBS_chinmo
2R	15384974	2R_15384974_SNP [dm3] 2R_19497469_SNP [dm6]	A	G	3.992e^-4	0.838	UPSTREAM CG15120 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4007867	2L_4007867_SNP [dm3] 2L_4007867_SNP [dm6]	T	C	3.997e^-4	0.838	SYNONYMOUS_CODING CG43773 UPSTREAM CG43774
2L	4929203	2L_4929203_SNP [dm3] 2L_4929203_SNP [dm6]	G	A	4.009e^-4	0.838	UPSTREAM hoe1 INTRON hoe1
3L	2629031	3L_2629031_SNP [dm3] 3L_2629031_SNP [dm6]	T	C	4.015e^-4	0.838	DOWNSTREAM CR45660 INTRON Pxn
3L	12458685	3L_12458685_SNP [dm3] 3L_12465585_SNP [dm6]	A	T	4.016e^-4	0.838	INTRON eyg	TF binding site mE1_TFBS_chinmo
2L	9444255	2L_9444255_SNP [dm3] 2L_9444255_SNP [dm6]	G	T	4.023e^-4	0.838	INTRON numb
3R	14338236	3R_14338236_DEL [dm3] 3R_18512514_DEL [dm6]	TA	T	4.025e^-4	0.838	INTRON fru
3L	12458687	3L_12458687_SNP [dm3] 3L_12465587_SNP [dm6]	C	G	4.027e^-4	0.838	INTRON eyg	TF binding site mE1_TFBS_chinmo
2R	15263117	2R_15263117_SNP [dm3] 2R_19375612_SNP [dm6]	C	A	4.039e^-4	0.838	UTR_5_PRIME CG10062
3R	5847134	3R_5847134_SNP [dm3] 3R_10021412_SNP [dm6]	A	T	4.046e^-4	0.838	START_GAINED Mical UTR_5_PRIME Mical INTRON Mical	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19078775	2L_19078775_SNP [dm3] 2L_19078775_SNP [dm6]	A	G	4.051e^-4	0.838	NON_SYNONYMOUS_CODING CG10700 DOWNSTREAM Lim3	TF binding site mE1_TFBS_sens
3L	10699625	3L_10699625_SNP [dm3] 3L_10706525_SNP [dm6]	C	A	4.055e^-4	0.838	INTERGENIC
2L	7937162	2L_7937162_SNP [dm3] 2L_7937162_SNP [dm6]	A	G	4.055e^-4	0.838	INTRON Snoo
2L	10134845	2L_10134845_SNP [dm3] 2L_10134845_SNP [dm6]	T	C	4.057e^-4	0.838	INTRON CG44153
3R	10241507	3R_10241507_SNP [dm3] 3R_14415785_SNP [dm6]	T	A	4.061e^-4	0.838	INTRON cv-c	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13269295	3L_13269295_SNP [dm3] 3L_13276195_SNP [dm6]	C	T	4.065e^-4	0.838	SYNONYMOUS_CODING caps	TF binding site mE1_TFBS_chinmo
3R	24726831	3R_24726831_SNP [dm3] 3R_28901109_SNP [dm6]	A	G	4.068e^-4	0.838	INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19776740	3R_19776740_SNP [dm3] 3R_23951018_SNP [dm6]	A	T	4.073e^-4	0.838	INTERGENIC
2R	12078185	2R_12078185_SNP [dm3] 2R_16190680_SNP [dm6]	C	A	4.075e^-4	0.838	NON_SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21993663	2L_21993663_SNP [dm3] 2L_21993663_SNP [dm6]	T	C	4.077e^-4	0.838	UPSTREAM CG2528 INTERGENIC
X	21233537	X_21233537_SNP [dm3] X_21362510_SNP [dm6]	T	A	4.078e^-4	0.838	UPSTREAM waw & 1 other DOWNSTREAM Sep1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11043959	3L_11043959_SNP [dm3] 3L_11050859_SNP [dm6]	G	C	4.080e^-4	0.838	UPSTREAM CG43693 INTRON CG43693 EXON CR45119
X	21233907	X_21233907_SNP [dm3] X_21362880_SNP [dm6]	G	T	4.081e^-4	0.838	UPSTREAM waw & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu
3R	10812609	3R_10812609_SNP [dm3] 3R_14986887_SNP [dm6]	C	A	4.090e^-4	0.838	INTERGENIC
3L	23470420	3L_23470420_SNP [dm3] 3L_23477320_SNP [dm6]	A	T	4.093e^-4	0.838	INTERGENIC	transposable element FlyBase
X	5605945	X_5605945_SNP [dm3] X_5711912_SNP [dm6]	A	T	4.096e^-4	0.838	INTRON CG33080
2R	11461685	2R_11461685_SNP [dm3] 2R_15574180_SNP [dm6]	C	A	4.098e^-4	0.838	UPSTREAM CG8204 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3L	12055131	3L_12055131_SNP [dm3] 3L_12062031_SNP [dm6]	G	A	4.110e^-4	0.838	INTRON rols
2R	4182643	2R_4182643_SNP [dm3] 2R_8295138_SNP [dm6]	C	T	4.116e^-4	0.838	INTERGENIC
2R	9347253	2R_9347253_SNP [dm3] 2R_13459748_SNP [dm6]	G	A	4.116e^-4	0.838	INTRON arr	TF binding site mE1_TFBS_HSA
3L	7848306	3L_7848306_SNP [dm3] 3L_7855206_SNP [dm6]	T	C	4.133e^-4	0.838	UTR_5_PRIME Pdp1 INTRON Pdp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	19441113	2R_19441113_SNP [dm3] 2R_23553590_SNP [dm6]	A	G	4.147e^-4	0.838	DOWNSTREAM Dcp-1 INTRON pita	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	7093190	3L_7093190_SNP [dm3] 3L_7100090_SNP [dm6]	A	C	4.151e^-4	0.838	INTRON form3
2L	18678406	2L_18678406_SNP [dm3] 2L_18678406_SNP [dm6]	C	G	4.154e^-4	0.838	UPSTREAM CG31751 INTRON CG31751
2L	22667048	2L_22667048_SNP [dm3] 2L_22774316_SNP [dm6]	C	T	4.154e^-4	0.838	INTERGENIC
X	14071199	X_14071199_SNP [dm3] X_14177166_SNP [dm6]	T	C	4.169e^-4	0.838	SYNONYMOUS_CODING CG11581	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16965137	2R_16965137_SNP [dm3] 2R_21077632_SNP [dm6]	C	T	4.186e^-4	0.838	INTRON Treh
2L	2727798	2L_2727798_SNP [dm3] 2L_2727798_SNP [dm6]	G	C	4.206e^-4	0.838	INTRON CG31689
2R	20195969	2R_20195969_SNP [dm3] 2R_24308446_SNP [dm6]	C	A	4.217e^-4	0.838	INTRON betaTub60D	regulatory region REDfly_CRMs
X	2604175	X_2604175_SNP [dm3] X_2710142_SNP [dm6]	C	T	4.228e^-4	0.838	INTRON CG2681	TF binding site mE1_TFBS_chinmo
2R	8136797	2R_8136797_SNP [dm3] 2R_12249292_SNP [dm6]	G	A	4.233e^-4	0.838	INTERGENIC
X	584024	X_584024_SNP [dm3] X_689991_SNP [dm6]	G	C	4.236e^-4	0.838	INTRON sdk	TF binding site BDTNP1_TFBS_da
2R	16141632	2R_16141632_SNP [dm3] 2R_20254127_SNP [dm6]	C	T	4.239e^-4	0.838	UPSTREAM CG9864 DOWNSTREAM Ate1 INTRON CG9864
3L	2121850	3L_2121850_SNP [dm3] 3L_2121850_SNP [dm6]	G	C	4.239e^-4	0.838	DOWNSTREAM zormin INTRON zormin	TF binding site BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3R	18479973	3R_18479973_SNP [dm3] 3R_22654251_SNP [dm6]	C	T	4.239e^-4	0.838	INTRON CG45058
3R	16143458	3R_16143458_SNP [dm3] 3R_20317736_SNP [dm6]	C	A	4.240e^-4	0.838	UPSTREAM CG42668 INTRON CG42668
X	18455955	X_18455955_SNP [dm3] X_18561922_SNP [dm6]	C	A	4.241e^-4	0.838	INTRON Bx	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2592713	2R_2592713_DEL [dm3] 2R_6705208_DEL [dm6]	TCTGAGG	T	4.263e^-4	0.838	INTRON CG3409 & 1 other
3L	9252312	3L_9252312_SNP [dm3] 3L_9259212_SNP [dm6]	T	C	4.264e^-4	0.838	INTRON GluRIB	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9422142	3R_9422142_INS [dm3] 3R_13596420_INS [dm6]	T	TT	4.267e^-4	0.838	INTERGENIC
2L	2743911	2L_2743911_SNP [dm3] 2L_2743911_SNP [dm6]	G	A	4.267e^-4	0.838	SYNONYMOUS_CODING CG9961 UTR_3_PRIME CG9961 DOWNSTREAM Hrs	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7019883	2L_7019883_SNP [dm3] 2L_7019883_SNP [dm6]	C	A	4.280e^-4	0.838	INTRON ade3	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	3554333	3L_3554333_SNP [dm3] 3L_3554333_SNP [dm6]	G	C	4.282e^-4	0.838	INTRON Eip63E
3L	24005202	3L_24005202_SNP [dm3] 3L_24012102_SNP [dm6]	G	A	4.283e^-4	0.838	UPSTREAM CR40053 INTERGENIC
3L	10840212	3L_10840212_INS [dm3] 3L_10847112_INS [dm6]	C	CTTATATATATCCTTGTACA...	4.287e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
X	5605948	X_5605948_INS [dm3] X_5711915_INS [dm6]	G	ATGGTGTGTGTGTATGGTAA...	4.293e^-4	0.838	INTRON CG33080
3R	7282901	3R_7282901_SNP [dm3] 3R_11457179_SNP [dm6]	T	C	4.297e^-4	0.838	INTRON CG17230 & 1 other
2R	16965162	2R_16965162_SNP [dm3] 2R_21077657_SNP [dm6]	A	T	4.297e^-4	0.838	INTRON Treh
3L	19232580	3L_19232580_SNP [dm3] 3L_19239480_SNP [dm6]	C	A	4.298e^-4	0.838	DOWNSTREAM CR43892 INTERGENIC
2R	11327929	2R_11327929_SNP [dm3] 2R_15440424_SNP [dm6]	G	T	4.298e^-4	0.838	INTRON CG43729
3L	13887805	3L_13887805_SNP [dm3] 3L_13894705_SNP [dm6]	C	T	4.311e^-4	0.838	INTRON dysc
2R	8131856	2R_8131856_DEL [dm3] 2R_12244351_DEL [dm6]	CCGCTA	T	4.315e^-4	0.838	INTRON CG43244
3R	20720691	3R_20720691_SNP [dm3] 3R_24894969_SNP [dm6]	T	A	4.315e^-4	0.838	UPSTREAM CG31121 INTRON CG11069	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	23413683	3R_23413683_SNP [dm3] 3R_27587961_SNP [dm6]	G	C	4.316e^-4	0.838	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21601955	3R_21601955_SNP [dm3] 3R_25776233_SNP [dm6]	G	A	4.317e^-4	0.838	START_GAINED CG17196 UTR_5_PRIME CG17196 UPSTREAM CG17197 & 1 other DOWNSTREAM CG17195
3L	10470086	3L_10470086_SNP [dm3] 3L_10476986_SNP [dm6]	C	T	4.320e^-4	0.838	INTERGENIC
3L	9319410	3L_9319410_SNP [dm3] 3L_9326310_SNP [dm6]	T	A	4.323e^-4	0.838	INTERGENIC
3L	9716505	3L_9716505_SNP [dm3] 3L_9723405_SNP [dm6]	A	T	4.328e^-4	0.838	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	15509020	3R_15509020_SNP [dm3] 3R_19683298_SNP [dm6]	C	T	4.329e^-4	0.838	INTRON Naam
3L	9808714	3L_9808714_SNP [dm3] 3L_9815614_SNP [dm6]	A	T	4.335e^-4	0.838	UPSTREAM CG43897 INTRON CG43897
3R	14127375	3R_14127375_SNP [dm3] 3R_18301653_SNP [dm6]	C	T	4.337e^-4	0.838	UTR_5_PRIME CG18600 DOWNSTREAM CG7126	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
X	7941708	X_7941708_SNP [dm3] X_8047675_SNP [dm6]	T	G	4.342e^-4	0.838	UTR_3_PRIME fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13643825	3L_13643825_SNP [dm3] 3L_13650725_SNP [dm6]	A	G	4.348e^-4	0.838	INTRON bru-3
2R	3599792	2R_3599792_SNP [dm3] 2R_7712287_SNP [dm6]	A	G	4.361e^-4	0.838	UPSTREAM CG1942 DOWNSTREAM mir-4909 & 1 other INTERGENIC
3L	2294190	3L_2294190_SNP [dm3] 3L_2294190_SNP [dm6]	G	C	4.364e^-4	0.838	INTRON MsR2
2R	8446164	2R_8446164_SNP [dm3] 2R_12558659_SNP [dm6]	C	T	4.364e^-4	0.838	SYNONYMOUS_CODING fra INTRON fra
3L	3205442	3L_3205442_SNP [dm3] 3L_3205442_SNP [dm6]	A	C	4.366e^-4	0.838	NON_SYNONYMOUS_CODING CG32277 UPSTREAM CG33159 DOWNSTREAM CG33160 INTRON gry	TF binding site mE1_TFBS_cad
3R	14127625	3R_14127625_SNP [dm3] 3R_18301903_SNP [dm6]	A	G	4.367e^-4	0.838	UPSTREAM CG18600 DOWNSTREAM CG7126 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
X	19870885	X_19870885_SNP [dm3] X_19976852_SNP [dm6]	T	C	4.372e^-4	0.838	INTERGENIC
3L	391899	3L_391899_INS [dm3] 3L_391899_INS [dm6]	G	GCCAATCTG	4.374e^-4	0.838	DOWNSTREAM CR45378 INTRON trh
3L	1172046	3L_1172046_SNP [dm3] 3L_1172046_SNP [dm6]	C	A	4.374e^-4	0.838	INTRON bab2	regulatory region REDfly_CRMs
3R	15407511	3R_15407511_SNP [dm3] 3R_19581789_SNP [dm6]	C	A	4.375e^-4	0.838	INTRON Dys
3R	12361420	3R_12361420_SNP [dm3] 3R_16535698_SNP [dm6]	A	G	4.382e^-4	0.838	INTRON CG42342	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10449285	2R_10449285_SNP [dm3] 2R_14561780_SNP [dm6]	T	C	4.387e^-4	0.838	INTRON ttv
3R	18095865	3R_18095865_SNP [dm3] 3R_22270143_SNP [dm6]	G	A	4.393e^-4	0.838	INTRON SKIP
3L	2475070	3L_2475070_SNP [dm3] 3L_2475070_SNP [dm6]	C	G	4.393e^-4	0.838	SYNONYMOUS_CODING CG16762 INTRON CG45186
2R	10862926	2R_10862926_SNP [dm3] 2R_14975421_SNP [dm6]	C	T	4.394e^-4	0.838	UPSTREAM ckn INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8137666	2R_8137666_DEL [dm3] 2R_12250161_DEL [dm6]	TC	T	4.397e^-4	0.838	INTERGENIC
2R	8137669	2R_8137669_SNP [dm3] 2R_12250164_SNP [dm6]	A	G	4.397e^-4	0.838	INTERGENIC
3L	23736781	3L_23736781_SNP [dm3] 3L_23743681_SNP [dm6]	G	T	4.399e^-4	0.838	INTRON CG17698	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	13425563	3L_13425563_SNP [dm3] 3L_13432463_SNP [dm6]	T	C	4.446e^-4	0.838	UPSTREAM tRNA:V4:70BCb INTRON CG10713
X	4351864	X_4351864_SNP [dm3] X_4457831_SNP [dm6]	G	A	4.447e^-4	0.838	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_da
3L	3306824	3L_3306824_SNP [dm3] 3L_3306824_SNP [dm6]	A	G	4.450e^-4	0.838	INTRON ZnT63C	TF binding site BDTNP1_TFBS_dl
2R	18161048	2R_18161048_SNP [dm3] 2R_22273543_SNP [dm6]	C	A	4.458e^-4	0.838	INTRON dve	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17162841	2L_17162841_SNP [dm3] 2L_17162841_SNP [dm6]	A	G	4.459e^-4	0.838	INTRON beat-IIIa & 1 other
2L	3792815	2L_3792815_SNP [dm3] 2L_3792815_SNP [dm6]	A	T	4.460e^-4	0.838	INTRON CG3921
3R	10428058	3R_10428058_SNP [dm3] 3R_14602336_SNP [dm6]	C	T	4.467e^-4	0.838	INTRON stumps	TF binding site mE1_TFBS_HSA
3R	19073144	3R_19073144_SNP [dm3] 3R_23247422_SNP [dm6]	A	G	4.469e^-4	0.838	INTRON CG4467
2L	12147093	2L_12147093_SNP [dm3] 2L_12147093_SNP [dm6]	G	A	4.470e^-4	0.838	INTRON CG31760
2L	7307027	2L_7307027_SNP [dm3] 2L_7307027_SNP [dm6]	C	T	4.474e^-4	0.838	UPSTREAM wg INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26068171	3R_26068171_SNP [dm3] 3R_30242449_SNP [dm6]	C	T	4.478e^-4	0.838	SPLICE_SITE_REGION CG9737 INTRON CG9737
3R	15407493	3R_15407493_SNP [dm3] 3R_19581771_SNP [dm6]	A	T	4.492e^-4	0.838	INTRON Dys
3L	15483419	3L_15483419_SNP [dm3] 3L_15490319_SNP [dm6]	T	A	4.497e^-4	0.838	INTERGENIC
3L	7462671	3L_7462671_SNP [dm3] 3L_7469571_SNP [dm6]	C	T	4.497e^-4	0.838	UTR_3_PRIME CG8543 DOWNSTREAM Tsp66A & 2 others
3L	9252258	3L_9252258_SNP [dm3] 3L_9259158_SNP [dm6]	A	T	4.501e^-4	0.838	INTRON GluRIB	TF binding site mE1_TFBS_HSA
2R	20872329	2R_20872329_SNP [dm3] 2R_24984806_SNP [dm6]	T	G	4.517e^-4	0.838	UTR_5_PRIME emp UPSTREAM emp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	10502612	2R_10502612_SNP [dm3] 2R_14615107_SNP [dm6]	G	T	4.525e^-4	0.838	NON_SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14153430	X_14153430_SNP [dm3] X_14259397_SNP [dm6]	G	A	4.538e^-4	0.838	DOWNSTREAM mud INTERGENIC
X	14153431	X_14153431_DEL [dm3] X_14259398_DEL [dm6]	TTA	T	4.538e^-4	0.838	DOWNSTREAM mud INTERGENIC
3L	22114007	3L_22114007_SNP [dm3] 3L_22120907_SNP [dm6]	A	C	4.545e^-4	0.838	INTERGENIC
3L	11172870	3L_11172870_SNP [dm3] 3L_11179770_SNP [dm6]	A	T	4.546e^-4	0.838	INTRON GlcAT-P
X	21116245	X_21116245_SNP [dm3] X_21245218_SNP [dm6]	T	C	4.546e^-4	0.838	INTRON CG32521
X	9390685	X_9390685_SNP [dm3] X_9496652_SNP [dm6]	A	G	4.547e^-4	0.838	UPSTREAM mgl INTRON mgl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	16517576	2R_16517576_SNP [dm3] 2R_20630071_SNP [dm6]	T	C	4.552e^-4	0.838	SYNONYMOUS_CODING Rcd6	TF binding site mE1_TFBS_chinmo
3R	25894882	3R_25894882_SNP [dm3] 3R_30069160_SNP [dm6]	G	A	4.562e^-4	0.838	INTRON sima
3R	8478814	3R_8478814_SNP [dm3] 3R_12653092_SNP [dm6]	T	A	4.565e^-4	0.838	DOWNSTREAM Dtg INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.523e^-2)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.01228

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	9.5173	0.0086

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2031 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	21876295	3R_21876295_SNP [dm3] 3R_26050573_SNP [dm6]	T	C	8.657e^-7	0.856	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13549586	3L_13549586_SNP [dm3] 3L_13556486_SNP [dm6]	C	A	2.484e^-6	0.856	INTRON bru-3
2R	10578635	2R_10578635_SNP [dm3] 2R_14691130_SNP [dm6]	T	C	4.324e^-6	0.856	INTRON mspo
2L	7586313	2L_7586313_SNP [dm3] 2L_7586313_SNP [dm6]	G	C	4.465e^-6	0.856	INTERGENIC
3L	16867305	3L_16867305_SNP [dm3] 3L_16874205_SNP [dm6]	G	A	4.550e^-6	0.856	INTRON Lmpt
X	15135061	X_15135061_SNP [dm3] X_15241028_SNP [dm6]	G	C	4.878e^-6	0.856	INTERGENIC
2R	3554713	2R_3554713_SNP [dm3] 2R_7667208_SNP [dm6]	A	C	4.932e^-6	0.856	SYNONYMOUS_CODING CG2064 DOWNSTREAM CG12042
3L	10699904	3L_10699904_INS [dm3] 3L_10706804_INS [dm6]	A	AA	5.016e^-6	0.856	INTERGENIC
2L	15090507	2L_15090507_SNP [dm3] 2L_15090507_SNP [dm6]	T	C	5.026e^-6	0.856	INTRON CG15270
3L	718515	3L_718515_SNP [dm3] 3L_718515_SNP [dm6]	A	C	5.224e^-6	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10288401	2L_10288401_SNP [dm3] 2L_10288401_SNP [dm6]	C	G	5.608e^-6	0.856	SYNONYMOUS_CODING CG5604
2L	11010499	2L_11010499_SNP [dm3] 2L_11010499_SNP [dm6]	C	T	7.143e^-6	0.856	SYNONYMOUS_CODING Art8 UTR_3_PRIME Nup154 UPSTREAM dUTPase DOWNSTREAM Nup154	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	13583841	3R_13583841_INS [dm3] 3R_17758119_INS [dm6]	T	TT	7.264e^-6	0.856	INTRON TyrR
3R	5878383	3R_5878383_SNP [dm3] 3R_10052661_SNP [dm6]	G	T	7.436e^-6	0.856	UPSTREAM Npc2e DOWNSTREAM CR44192 INTRON Fancl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	5878395	3R_5878395_SNP [dm3] 3R_10052673_SNP [dm6]	A	G	8.934e^-6	0.856	UPSTREAM Npc2e DOWNSTREAM CR44192 INTRON Fancl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	1.064e^-5	0.856	EXON CR44950
3L	7700032	3L_7700032_SNP [dm3] 3L_7706932_SNP [dm6]	G	T	1.073e^-5	0.856	INTRON CG32373 & 1 other
X	19250476	X_19250476_SNP [dm3] X_19356443_SNP [dm6]	A	T	1.141e^-5	0.856	INTRON kek5
3L	13549577	3L_13549577_SNP [dm3] 3L_13556477_SNP [dm6]	G	A	1.162e^-5	0.856	INTRON bru-3
3R	10969892	3R_10969892_SNP [dm3] 3R_15144170_SNP [dm6]	A	G	1.188e^-5	0.856	INTRON GlyS	TF binding site mE1_TFBS_cad
2R	15267497	2R_15267497_SNP [dm3] 2R_19379992_SNP [dm6]	G	A	1.376e^-5	0.856	SYNONYMOUS_CODING CG10062 UPSTREAM CG10073
3R	9960186	3R_9960186_SNP [dm3] 3R_14134464_SNP [dm6]	C	A	1.423e^-5	0.856	INTERGENIC
2L	19027934	2L_19027934_SNP [dm3] 2L_19027934_SNP [dm6]	T	C	1.497e^-5	0.856	UTR_5_PRIME Side
3R	16184077	3R_16184077_SNP [dm3] 3R_20358355_SNP [dm6]	A	T	1.501e^-5	0.856	UPSTREAM CR45023 INTERGENIC
3R	9960183	3R_9960183_SNP [dm3] 3R_14134461_SNP [dm6]	G	T	2.094e^-5	0.856	INTERGENIC
2L	11010372	2L_11010372_SNP [dm3] 2L_11010372_SNP [dm6]	G	T	2.120e^-5	0.856	SYNONYMOUS_CODING Art8 UTR_3_PRIME Nup154 UPSTREAM dUTPase DOWNSTREAM Nup154	TF binding site mE1_TFBS_sens
2R	4036986	2R_4036986_SNP [dm3] 2R_8149481_SNP [dm6]	A	C	2.199e^-5	0.856	UPSTREAM kermit INTRON Lpin & 1 other	TF binding site mE1_TFBS_cad
3R	9960187	3R_9960187_SNP [dm3] 3R_14134465_SNP [dm6]	C	T	2.256e^-5	0.856	INTERGENIC
X	10061528	X_10061528_SNP [dm3] X_10167495_SNP [dm6]	C	A	2.297e^-5	0.856	INTRON CR44894 & 1 other
2L	15090517	2L_15090517_SNP [dm3] 2L_15090517_SNP [dm6]	A	G	2.312e^-5	0.856	INTRON CG15270
3R	10969882	3R_10969882_SNP [dm3] 3R_15144160_SNP [dm6]	A	C	2.562e^-5	0.856	INTRON GlyS	TF binding site mE1_TFBS_cad
3L	18346603	3L_18346603_SNP [dm3] 3L_18353503_SNP [dm6]	G	T	2.607e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	1542672	2L_1542672_SNP [dm3] 2L_1542672_SNP [dm6]	C	T	2.622e^-5	0.856	INTERGENIC
2L	18885261	2L_18885261_SNP [dm3] 2L_18885261_SNP [dm6]	C	G	2.724e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	13659328	2R_13659328_SNP [dm3] 2R_17771823_SNP [dm6]	T	C	2.739e^-5	0.856	INTRON CG6362	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7057433	2L_7057433_SNP [dm3] 2L_7057433_SNP [dm6]	C	T	2.795e^-5	0.856	SYNONYMOUS_CODING Mnn1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8203812	2L_8203812_SNP [dm3] 2L_8203812_SNP [dm6]	C	T	3.021e^-5	0.856	INTRON CR44119 & 1 other
2R	8136809	2R_8136809_SNP [dm3] 2R_12249304_SNP [dm6]	G	T	3.049e^-5	0.856	INTERGENIC
3R	5785958	3R_5785958_SNP [dm3] 3R_9960236_SNP [dm6]	T	C	3.151e^-5	0.856	INTRON Glut4EF
2R	11540873	2R_11540873_SNP [dm3] 2R_15653368_SNP [dm6]	G	C	3.349e^-5	0.856	INTRON CG42524
2L	11219826	2L_11219826_SNP [dm3] 2L_11219826_SNP [dm6]	A	C	3.366e^-5	0.856	INTRON ab	TF binding site BDTNP1_TFBS_da
2R	3532145	2R_3532145_SNP [dm3] 2R_7644640_SNP [dm6]	T	A	3.449e^-5	0.856	SYNONYMOUS_CODING CG43340 INTRON CG43340
3L	3562229	3L_3562229_SNP [dm3] 3L_3562229_SNP [dm6]	A	G	3.551e^-5	0.856	INTRON Eip63E
2L	22020494	2L_22020494_SNP [dm3] 2L_22020494_SNP [dm6]	A	G	3.592e^-5	0.856	DOWNSTREAM CR33987 INTRON tio	TF binding site mE1_TFBS_Trl
2R	5895310	2R_5895310_SNP [dm3] 2R_10007805_SNP [dm6]	T	A	3.600e^-5	0.856	INTRON Pka-R2
3L	3547769	3L_3547769_SNP [dm3] 3L_3547769_SNP [dm6]	T	C	3.615e^-5	0.856	INTRON Eip63E
3R	20565182	3R_20565182_SNP [dm3] 3R_24739460_SNP [dm6]	T	G	3.620e^-5	0.856	INTRON tok
3L	18998410	3L_18998410_SNP [dm3] 3L_19005310_SNP [dm6]	C	G	3.697e^-5	0.856	NON_SYNONYMOUS_CODING nkd UTR_3_PRIME nkd	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	11530467	2R_11530467_SNP [dm3] 2R_15642962_SNP [dm6]	T	A	3.753e^-5	0.856	INTRON CG42524
2R	17725920	2R_17725920_SNP [dm3] 2R_21838415_SNP [dm6]	C	T	3.807e^-5	0.856	SYNONYMOUS_CODING CG4372
3R	18478788	3R_18478788_SNP [dm3] 3R_22653066_SNP [dm6]	G	A	3.813e^-5	0.856	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1362124	3L_1362124_SNP [dm3] 3L_1362124_SNP [dm6]	A	G	3.853e^-5	0.856	INTRON Ptp61F
X	5058698	X_5058698_SNP [dm3] X_5164665_SNP [dm6]	T	A	4.001e^-5	0.856	UTR_5_PRIME CG15465 & 1 other UPSTREAM CG15465 & 1 other INTRON rg	TF binding site mE1_TFBS_Trl
3R	5786011	3R_5786011_SNP [dm3] 3R_9960289_SNP [dm6]	T	A	4.119e^-5	0.856	INTRON Glut4EF
3R	12745588	3R_12745588_SNP [dm3] 3R_16919866_SNP [dm6]	A	G	4.260e^-5	0.856	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	19439532	2R_19439532_SNP [dm3] 2R_23552009_SNP [dm6]	T	A	4.439e^-5	0.856	UPSTREAM pita INTRON pita & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	3547796	3L_3547796_SNP [dm3] 3L_3547796_SNP [dm6]	T	A	4.452e^-5	0.856	INTRON Eip63E
3L	2124435	3L_2124435_SNP [dm3] 3L_2124435_SNP [dm6]	T	A	4.460e^-5	0.856	SYNONYMOUS_CODING zormin INTRON zormin
X	5058675	X_5058675_SNP [dm3] X_5164642_SNP [dm6]	C	A	4.610e^-5	0.856	UTR_5_PRIME CG15465 & 1 other UPSTREAM CG15465 & 1 other INTRON rg	TF binding site mE1_TFBS_Trl
X	20936848	X_20936848_SNP [dm3] X_21065821_SNP [dm6]	T	A	4.655e^-5	0.856	INTRON bves & 1 other
X	18645733	X_18645733_SNP [dm3] X_18751700_SNP [dm6]	C	A	4.664e^-5	0.856	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11334522	2L_11334522_SNP [dm3] 2L_11334522_SNP [dm6]	A	C	4.762e^-5	0.856	INTERGENIC
3R	18478815	3R_18478815_SNP [dm3] 3R_22653093_SNP [dm6]	T	C	4.771e^-5	0.856	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17193468	3L_17193468_SNP [dm3] 3L_17200368_SNP [dm6]	G	A	4.780e^-5	0.856	INTRON Rbp6
3R	14616564	3R_14616564_SNP [dm3] 3R_18790842_SNP [dm6]	T	C	4.793e^-5	0.856	INTRON CG7720
3R	21014655	3R_21014655_SNP [dm3] 3R_25188933_SNP [dm6]	G	A	4.971e^-5	0.856	INTRON lobo & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	7484520	3L_7484520_SNP [dm3] 3L_7491420_SNP [dm6]	T	A	5.052e^-5	0.856	UPSTREAM Cyp316a1 INTERGENIC
3L	17926743	3L_17926743_INS [dm3] 3L_17933643_INS [dm6]	A	ACA	5.056e^-5	0.856	UPSTREAM CG43173 & 1 other INTERGENIC
2L	11765513	2L_11765513_SNP [dm3] 2L_11765513_SNP [dm6]	T	C	5.077e^-5	0.856	INTERGENIC
3R	25912874	3R_25912874_SNP [dm3] 3R_30087152_SNP [dm6]	C	A	5.141e^-5	0.856	INTRON sima
2R	8137681	2R_8137681_SNP [dm3] 2R_12250176_SNP [dm6]	A	C	5.214e^-5	0.856	INTERGENIC
2R	11822982	2R_11822982_SNP [dm3] 2R_15935477_SNP [dm6]	A	T	5.292e^-5	0.856	SYNONYMOUS_CODING CG8297 UPSTREAM Iap2 DOWNSTREAM Mlf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10604623	3L_10604623_SNP [dm3] 3L_10611523_SNP [dm6]	G	A	5.330e^-5	0.856	INTERGENIC
2L	13869018	2L_13869018_SNP [dm3] 2L_13869018_SNP [dm6]	G	T	5.380e^-5	0.856	INTRON CenG1A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13451571	3R_13451571_SNP [dm3] 3R_17625849_SNP [dm6]	A	G	5.528e^-5	0.856	NON_SYNONYMOUS_CODING AttD UPSTREAM tRNA:T:90Cb
3R	3407166	3R_3407166_SNP [dm3] 3R_7581444_SNP [dm6]	A	G	5.530e^-5	0.856	INTRON CG34127
3R	26864084	3R_26864084_SNP [dm3] 3R_31038362_SNP [dm6]	T	C	5.545e^-5	0.856	INTERGENIC
3L	2596450	3L_2596450_SNP [dm3] 3L_2596450_SNP [dm6]	G	A	5.643e^-5	0.856	SYNONYMOUS_CODING CG16984 UTR_3_PRIME CG12182 DOWNSTREAM dos & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26864029	3R_26864029_SNP [dm3] 3R_31038307_SNP [dm6]	G	A	5.666e^-5	0.856	INTERGENIC
3R	5878522	3R_5878522_SNP [dm3] 3R_10052800_SNP [dm6]	T	C	5.826e^-5	0.856	NON_SYNONYMOUS_CODING Fancl UPSTREAM Npc2e DOWNSTREAM CR44192	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16044740	2R_16044740_INS [dm3] 2R_20157235_INS [dm6]	A	ATTA	5.834e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19409961	2R_19409961_SNP [dm3] 2R_23522438_SNP [dm6]	C	A	5.837e^-5	0.856	INTRON RabX1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	1098649	3L_1098649_SNP [dm3] 3L_1098649_SNP [dm6]	G	T	5.865e^-5	0.856	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	4855172	2L_4855172_SNP [dm3] 2L_4855172_SNP [dm6]	G	A	5.893e^-5	0.856	INTRON pog
X	21231603	X_21231603_SNP [dm3] X_21360576_SNP [dm6]	C	T	5.895e^-5	0.856	INTRON Sep1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	5786016	3R_5786016_SNP [dm3] 3R_9960294_SNP [dm6]	C	T	5.961e^-5	0.856	INTRON Glut4EF
2L	21998906	2L_21998906_SNP [dm3] 2L_21998906_SNP [dm6]	C	A	5.991e^-5	0.856	DOWNSTREAM CR44916 INTERGENIC	transposable element FlyBase
2R	18290522	2R_18290522_SNP [dm3] 2R_22403017_SNP [dm6]	G	T	6.016e^-5	0.856	UPSTREAM babos EXON CR44760	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	8478911	3R_8478911_SNP [dm3] 3R_12653189_SNP [dm6]	G	A	6.018e^-5	0.856	DOWNSTREAM Dtg INTERGENIC
2L	2782693	2L_2782693_SNP [dm3] 2L_2782693_SNP [dm6]	A	G	6.021e^-5	0.856	UTR_3_PRIME Syt1
3R	5786004	3R_5786004_SNP [dm3] 3R_9960282_SNP [dm6]	C	T	6.053e^-5	0.856	INTRON Glut4EF
2L	9487588	2L_9487588_SNP [dm3] 2L_9487588_SNP [dm6]	A	G	6.065e^-5	0.856	INTERGENIC
3R	14616571	3R_14616571_SNP [dm3] 3R_18790849_SNP [dm6]	T	C	6.079e^-5	0.856	INTRON CG7720
3L	14370112	3L_14370112_SNP [dm3] 3L_14377012_SNP [dm6]	C	A	6.099e^-5	0.856	INTERGENIC
3R	14338279	3R_14338279_SNP [dm3] 3R_18512557_SNP [dm6]	G	T	6.109e^-5	0.856	INTRON fru
3L	4214680	3L_4214680_SNP [dm3] 3L_4214680_SNP [dm6]	G	A	6.120e^-5	0.856	UPSTREAM Cpr64Ad INTRON CG43367
2R	16427805	2R_16427805_SNP [dm3] 2R_20540300_SNP [dm6]	T	A	6.133e^-5	0.856	UPSTREAM CG13427 DOWNSTREAM CR44652 INTRON CG13428	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	17078601	2R_17078601_SNP [dm3] 2R_21191096_SNP [dm6]	A	G	6.148e^-5	0.856	NON_SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3547729	3L_3547729_SNP [dm3] 3L_3547729_SNP [dm6]	A	T	6.204e^-5	0.856	INTRON Eip63E
X	2430647	X_2430647_SNP [dm3] X_2536614_SNP [dm6]	G	C	6.239e^-5	0.856	INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	15884106	2R_15884106_SNP [dm3] 2R_19996601_SNP [dm6]	G	C	6.283e^-5	0.856	INTERGENIC
2R	18290525	2R_18290525_SNP [dm3] 2R_22403020_SNP [dm6]	A	G	6.285e^-5	0.856	UPSTREAM babos EXON CR44760	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	25912875	3R_25912875_SNP [dm3] 3R_30087153_SNP [dm6]	T	C	6.289e^-5	0.856	INTRON sima
X	13501876	X_13501876_SNP [dm3] X_13607843_SNP [dm6]	G	T	6.330e^-5	0.856	SYNONYMOUS_CODING CG11178	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13106773	3R_13106773_SNP [dm3] 3R_17281051_SNP [dm6]	T	C	6.378e^-5	0.856	INTERGENIC
2L	8203625	2L_8203625_SNP [dm3] 2L_8203625_SNP [dm6]	C	T	6.421e^-5	0.856	SYNONYMOUS_CODING SLC5A11 INTRON CR44119
3R	8478814	3R_8478814_SNP [dm3] 3R_12653092_SNP [dm6]	T	A	6.477e^-5	0.856	DOWNSTREAM Dtg INTERGENIC
2L	12682601	2L_12682601_SNP [dm3] 2L_12682601_SNP [dm6]	A	T	6.492e^-5	0.856	INTRON pdm2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	17078585	2R_17078585_SNP [dm3] 2R_21191080_SNP [dm6]	A	G	6.568e^-5	0.856	NON_SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3500278	2L_3500278_SNP [dm3] 2L_3500278_SNP [dm6]	A	G	6.577e^-5	0.856	SYNONYMOUS_CODING tim DOWNSTREAM tim
3L	3561617	3L_3561617_DEL [dm3] 3L_3561617_DEL [dm6]	AT	A	6.578e^-5	0.856	INTRON Eip63E
3R	24724988	3R_24724988_SNP [dm3] 3R_28899266_SNP [dm6]	C	T	6.666e^-5	0.856	INTRON Doa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5058679	X_5058679_SNP [dm3] X_5164646_SNP [dm6]	T	C	6.670e^-5	0.856	UTR_5_PRIME CG15465 & 1 other UPSTREAM CG15465 & 1 other INTRON rg	TF binding site mE1_TFBS_Trl
X	18464186	X_18464186_SNP [dm3] X_18570153_SNP [dm6]	C	A	6.676e^-5	0.856	INTRON Bx	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
X	20215704	X_20215704_SNP [dm3] X_20344677_SNP [dm6]	G	A	6.730e^-5	0.856	INTERGENIC
X	10061504	X_10061504_SNP [dm3] X_10167471_SNP [dm6]	T	A	6.849e^-5	0.856	INTRON CR44894 & 1 other
2L	15090500	2L_15090500_SNP [dm3] 2L_15090500_SNP [dm6]	T	A	6.980e^-5	0.856	INTRON CG15270
2L	22020382	2L_22020382_SNP [dm3] 2L_22020382_SNP [dm6]	G	T	7.003e^-5	0.856	DOWNSTREAM CR33987 INTRON tio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	19451486	2R_19451486_SNP [dm3] 2R_23563963_SNP [dm6]	A	G	7.046e^-5	0.856	UTR_3_PRIME Pi3K59F UPSTREAM CG30184 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9196893	2L_9196893_SNP [dm3] 2L_9196893_SNP [dm6]	T	A	7.212e^-5	0.856	INTRON tai
2L	14954330	2L_14954330_SNP [dm3] 2L_14954330_SNP [dm6]	A	C	7.308e^-5	0.856	INTRON CG42313
3R	13357010	3R_13357010_SNP [dm3] 3R_17531288_SNP [dm6]	C	T	7.315e^-5	0.856	INTERGENIC
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	7.424e^-5	0.856	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15973553	3R_15973553_SNP [dm3] 3R_20147831_SNP [dm6]	G	A	7.624e^-5	0.856	INTERGENIC
X	21233278	X_21233278_SNP [dm3] X_21362251_SNP [dm6]	G	A	7.643e^-5	0.856	UPSTREAM waw & 1 other DOWNSTREAM Sep1 INTERGENIC
2L	9942004	2L_9942004_SNP [dm3] 2L_9942004_SNP [dm6]	C	A	7.663e^-5	0.856	SYNONYMOUS_CODING CG5853 UTR_3_PRIME CG4619	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2727798	2L_2727798_SNP [dm3] 2L_2727798_SNP [dm6]	G	C	7.743e^-5	0.856	INTRON CG31689
3L	13554710	3L_13554710_SNP [dm3] 3L_13561610_SNP [dm6]	A	G	7.792e^-5	0.856	INTRON bru-3	TF binding site mE1_TFBS_chinmo
2R	16427946	2R_16427946_SNP [dm3] 2R_20540441_SNP [dm6]	G	A	7.845e^-5	0.856	UTR_5_PRIME CG13428 DOWNSTREAM CR44652	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2L	15759696	2L_15759696_SNP [dm3] 2L_15759696_SNP [dm6]	G	A	7.911e^-5	0.856	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3547681	3L_3547681_SNP [dm3] 3L_3547681_SNP [dm6]	C	G	7.938e^-5	0.856	INTRON Eip63E
2L	2735393	2L_2735393_SNP [dm3] 2L_2735393_SNP [dm6]	C	A	8.007e^-5	0.856	UPSTREAM CG31689 INTRON CG31689
3L	3562041	3L_3562041_SNP [dm3] 3L_3562041_SNP [dm6]	G	T	8.013e^-5	0.856	INTRON Eip63E
2R	8137678	2R_8137678_SNP [dm3] 2R_12250173_SNP [dm6]	T	C	8.032e^-5	0.856	INTERGENIC
3R	15973532	3R_15973532_SNP [dm3] 3R_20147810_SNP [dm6]	A	C	8.072e^-5	0.856	INTERGENIC
2L	16547522	2L_16547522_DEL [dm3] 2L_16547522_DEL [dm6]	AA	A	8.137e^-5	0.856	INTRON CG42389
2L	22057460	2L_22057460_SNP [dm3] 2L_22057460_SNP [dm6]	G	T	8.201e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	14694862	X_14694862_SNP [dm3] X_14800829_SNP [dm6]	C	T	8.224e^-5	0.856	SYNONYMOUS_CODING rut
2L	12111337	2L_12111337_SNP [dm3] 2L_12111337_SNP [dm6]	T	G	8.302e^-5	0.856	NON_SYNONYMOUS_CODING Phae2 DOWNSTREAM Phae1	TF binding site mE1_TFBS_cad
X	3162612	X_3162612_SNP [dm3] X_3268579_SNP [dm6]	G	T	8.353e^-5	0.856	INTRON dnc
2R	19409956	2R_19409956_DEL [dm3] 2R_23522433_DEL [dm6]	GA	G	8.359e^-5	0.856	INTRON RabX1	TF binding site BDTNP1_TFBS_dl
X	13500120	X_13500120_DEL [dm3] X_13606087_DEL [dm6]	TCGATAATGCCGT...	T	8.369e^-5	0.856	UTR_5_PRIME CG11178 UPSTREAM CG11178 DOWNSTREAM CR44654	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
3R	14038121	3R_14038121_SNP [dm3] 3R_18212399_SNP [dm6]	C	G	8.392e^-5	0.856	INTRON CG7985
2L	8203792	2L_8203792_SNP [dm3] 2L_8203792_SNP [dm6]	G	A	8.447e^-5	0.856	INTRON CR44119 & 1 other
3L	2948031	3L_2948031_SNP [dm3] 3L_2948031_SNP [dm6]	A	G	8.457e^-5	0.856	INTRON Shab
2L	16493446	2L_16493446_SNP [dm3] 2L_16493446_SNP [dm6]	C	T	8.481e^-5	0.856	INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	7366142	3R_7366142_SNP [dm3] 3R_11540420_SNP [dm6]	T	G	8.489e^-5	0.856	INTRON dpr4
3R	7282901	3R_7282901_SNP [dm3] 3R_11457179_SNP [dm6]	T	C	8.530e^-5	0.856	INTRON CG17230 & 1 other
2R	16044742	2R_16044742_MNP [dm3] 2R_20157237_MNP [dm6]	GCAT	ATGC	8.560e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14127616	3R_14127616_SNP [dm3] 3R_18301894_SNP [dm6]	G	A	8.565e^-5	0.856	UPSTREAM CG18600 DOWNSTREAM CG7126 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
X	5058682	X_5058682_SNP [dm3] X_5164649_SNP [dm6]	A	G	8.641e^-5	0.856	UTR_5_PRIME CG15465 & 1 other UPSTREAM CG15465 & 1 other INTRON rg	TF binding site mE1_TFBS_Trl
2L	11219801	2L_11219801_SNP [dm3] 2L_11219801_SNP [dm6]	T	A	8.673e^-5	0.856	INTRON ab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	4082330	3L_4082330_SNP [dm3] 3L_4082330_SNP [dm6]	C	T	8.788e^-5	0.856	INTRON Gad1
3L	1689564	3L_1689564_SNP [dm3] 3L_1689564_SNP [dm6]	A	G	8.829e^-5	0.856	UTR_5_PRIME CG7991 INTRON CG7991
3L	17193362	3L_17193362_SNP [dm3] 3L_17200262_SNP [dm6]	G	T	8.842e^-5	0.856	INTRON Rbp6
X	19249055	X_19249055_SNP [dm3] X_19355022_SNP [dm6]	G	A	8.862e^-5	0.856	INTRON kek5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	21916487	2L_21916487_SNP [dm3] 2L_21916487_SNP [dm6]	T	A	8.959e^-5	0.856	NON_SYNONYMOUS_CODING CG11634
2L	21914973	2L_21914973_SNP [dm3] 2L_21914973_SNP [dm6]	T	C	8.974e^-5	0.856	SPLICE_SITE_REGION CG31600 INTRON CG31600
3R	25073472	3R_25073472_SNP [dm3] 3R_29247750_SNP [dm6]	C	T	9.074e^-5	0.856	SYNONYMOUS_CODING SP1029	TF binding site mE1_TFBS_cad
2R	12545372	2R_12545372_SNP [dm3] 2R_16657867_SNP [dm6]	T	A	9.082e^-5	0.856	INTRON Picot
2R	11823073	2R_11823073_SNP [dm3] 2R_15935568_SNP [dm6]	A	C	9.093e^-5	0.856	NON_SYNONYMOUS_CODING CG8297 UPSTREAM Iap2 DOWNSTREAM Mlf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21895229	3R_21895229_SNP [dm3] 3R_26069507_SNP [dm6]	A	C	9.140e^-5	0.856	DOWNSTREAM CR44950 INTERGENIC
2R	19339351	2R_19339351_SNP [dm3] 2R_23451828_SNP [dm6]	T	C	9.178e^-5	0.856	INTRON CG43795
3R	7331866	3R_7331866_SNP [dm3] 3R_11506144_SNP [dm6]	C	T	9.183e^-5	0.856	DOWNSTREAM dpr5 INTERGENIC
2R	3528659	2R_3528659_SNP [dm3] 2R_7641154_SNP [dm6]	G	A	9.237e^-5	0.856	SYNONYMOUS_CODING CG43340 INTRON CG43340	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7484626	3L_7484626_SNP [dm3] 3L_7491526_SNP [dm6]	G	T	9.248e^-5	0.856	UPSTREAM Cyp316a1 INTERGENIC
3L	10604687	3L_10604687_SNP [dm3] 3L_10611587_SNP [dm6]	G	A	9.253e^-5	0.856	INTERGENIC
2R	17786108	2R_17786108_SNP [dm3] 2R_21898603_SNP [dm6]	G	C	9.404e^-5	0.856	INTRON Fili
X	3376671	X_3376671_SNP [dm3] X_3482638_SNP [dm6]	G	A	9.442e^-5	0.856	UPSTREAM CG10802 & 1 other INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	7896882	3L_7896882_SNP [dm3] 3L_7903782_SNP [dm6]	G	A	9.476e^-5	0.856	UPSTREAM pbl INTRON pbl	TF binding site mE1_TFBS_D
2R	19451291	2R_19451291_SNP [dm3] 2R_23563768_SNP [dm6]	C	T	9.547e^-5	0.856	SYNONYMOUS_CODING Pi3K59F UPSTREAM CG30184	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3562242	3L_3562242_SNP [dm3] 3L_3562242_SNP [dm6]	C	A	9.598e^-5	0.856	INTRON Eip63E
3L	1647215	3L_1647215_SNP [dm3] 3L_1647215_SNP [dm6]	T	C	9.614e^-5	0.856	SYNONYMOUS_CODING CG17249 UPSTREAM Bro	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	19600188	X_19600188_SNP [dm3] X_19706155_SNP [dm6]	G	C	9.653e^-5	0.856	DOWNSTREAM meso18E INTRON CG14230	TF binding site mE1_TFBS_cad
3L	13549841	3L_13549841_SNP [dm3] 3L_13556741_SNP [dm6]	A	G	9.728e^-5	0.856	INTRON bru-3
2R	5112660	2R_5112660_SNP [dm3] 2R_9225155_SNP [dm6]	T	C	9.873e^-5	0.856	INTERGENIC
3L	19000284	3L_19000284_SNP [dm3] 3L_19007184_SNP [dm6]	G	C	9.938e^-5	0.856	INTRON nkd	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	21877335	3R_21877335_SNP [dm3] 3R_26051613_SNP [dm6]	C	T	9.949e^-5	0.856	SYNONYMOUS_CODING Exo84	TF binding site BDTNP1_TFBS_prd
3R	21877368	3R_21877368_SNP [dm3] 3R_26051646_SNP [dm6]	T	C	9.949e^-5	0.856	SYNONYMOUS_CODING Exo84	TF binding site BDTNP1_TFBS_prd
2L	11766577	2L_11766577_SNP [dm3] 2L_11766577_SNP [dm6]	A	G	1.006e^-4	0.856	INTERGENIC
2R	13400409	2R_13400409_SNP [dm3] 2R_17512904_SNP [dm6]	G	A	1.008e^-4	0.856	SYNONYMOUS_CODING CG4847	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20404418	2L_20404418_SNP [dm3] 2L_20404418_SNP [dm6]	G	A	1.009e^-4	0.856	INTRON CG10947
2L	14157209	2L_14157209_SNP [dm3] 2L_14157209_SNP [dm6]	G	T	1.009e^-4	0.856	SYNONYMOUS_CODING CG17341
X	5058497	X_5058497_SNP [dm3] X_5164464_SNP [dm6]	A	T	1.011e^-4	0.856	UTR_5_PRIME CG15465 & 1 other UPSTREAM CG15465 & 1 other INTRON rg	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	17548804	3L_17548804_SNP [dm3] 3L_17555704_SNP [dm6]	T	C	1.014e^-4	0.856	START_GAINED CycT UTR_5_PRIME CycT INTRON CycT	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2R	19410022	2R_19410022_SNP [dm3] 2R_23522499_SNP [dm6]	A	G	1.019e^-4	0.856	INTRON RabX1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	19873187	X_19873187_INS [dm3] X_19979154_INS [dm6]	A	ATTTTCTATTAAGAGATAT...	1.039e^-4	0.856	INTERGENIC
2R	10837352	2R_10837352_SNP [dm3] 2R_14949847_SNP [dm6]	A	G	1.041e^-4	0.856	UPSTREAM aPKC INTRON aPKC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	12828595	2R_12828595_SNP [dm3] 2R_16941090_SNP [dm6]	T	G	1.045e^-4	0.856	INTRON Pkc53E
2R	3557375	2R_3557375_MNP [dm3] 2R_7669870_MNP [dm6]	TTT	AAA	1.047e^-4	0.856	UPSTREAM CG12042 DOWNSTREAM CG12826 INTERGENIC
2L	9123381	2L_9123381_INS [dm3] 2L_9123381_INS [dm6]	C	CC	1.049e^-4	0.856	UPSTREAM CR44615 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7484492	3L_7484492_SNP [dm3] 3L_7491392_SNP [dm6]	G	T	1.049e^-4	0.856	UPSTREAM Cyp316a1 INTERGENIC
3L	16460233	3L_16460233_SNP [dm3] 3L_16467133_SNP [dm6]	C	T	1.055e^-4	0.856	INTRON CG33158	TF binding site mE1_TFBS_cnc
2L	10280532	2L_10280532_SNP [dm3] 2L_10280532_SNP [dm6]	G	T	1.057e^-4	0.856	NON_SYNONYMOUS_CODING CG34043
3R	11858178	3R_11858178_SNP [dm3] 3R_16032456_SNP [dm6]	C	T	1.062e^-4	0.856	INTRON pnr	TF binding site mE1_TFBS_inv
2R	3531655	2R_3531655_SNP [dm3] 2R_7644150_SNP [dm6]	C	T	1.066e^-4	0.856	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340
X	4848439	X_4848439_SNP [dm3] X_4954406_SNP [dm6]	C	T	1.080e^-4	0.856	SYNONYMOUS_CODING Ptp4E DOWNSTREAM Ptp4E INTRON Ptp4E
3R	13096875	3R_13096875_SNP [dm3] 3R_17271153_SNP [dm6]	C	T	1.083e^-4	0.856	UPSTREAM CR44258 INTERGENIC
2L	21802210	2L_21802210_SNP [dm3] 2L_21802210_SNP [dm6]	G	A	1.087e^-4	0.856	INTERGENIC
3L	7484565	3L_7484565_SNP [dm3] 3L_7491465_SNP [dm6]	G	C	1.096e^-4	0.856	UPSTREAM Cyp316a1 INTERGENIC
2R	18290499	2R_18290499_INS [dm3] 2R_22402994_INS [dm6]	G	ATGT	1.098e^-4	0.856	UPSTREAM babos EXON CR44760	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	18290506	2R_18290506_SNP [dm3] 2R_22403001_SNP [dm6]	C	T	1.098e^-4	0.856	UPSTREAM babos EXON CR44760	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	8204298	2L_8204298_SNP [dm3] 2L_8204298_SNP [dm6]	T	G	1.099e^-4	0.856	INTRON CR44119 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	18645729	X_18645729_SNP [dm3] X_18751696_SNP [dm6]	T	A	1.118e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19872480	X_19872480_SNP [dm3] X_19978447_SNP [dm6]	A	T	1.122e^-4	0.856	INTERGENIC
X	584024	X_584024_SNP [dm3] X_689991_SNP [dm6]	G	C	1.132e^-4	0.856	INTRON sdk	TF binding site BDTNP1_TFBS_da
3L	4841147	3L_4841147_SNP [dm3] 3L_4841147_SNP [dm6]	C	A	1.133e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	5899901	3R_5899901_SNP [dm3] 3R_10074179_SNP [dm6]	A	C	1.143e^-4	0.856	SYNONYMOUS_CODING CG5361 DOWNSTREAM nerfin-2
2L	19315003	2L_19315003_SNP [dm3] 2L_19315003_SNP [dm6]	A	G	1.147e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16427989	2R_16427989_SNP [dm3] 2R_20540484_SNP [dm6]	C	T	1.148e^-4	0.856	UPSTREAM CG13428 DOWNSTREAM CR44652 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
X	5058498	X_5058498_SNP [dm3] X_5164465_SNP [dm6]	A	T	1.149e^-4	0.856	UTR_5_PRIME CG15465 & 1 other UPSTREAM CG15465 & 1 other INTRON rg	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	11899533	2R_11899533_SNP [dm3] 2R_16012028_SNP [dm6]	G	T	1.162e^-4	0.856	SYNONYMOUS_CODING CG8389 UPSTREAM CG8388	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	10280730	2L_10280730_SNP [dm3] 2L_10280730_SNP [dm6]	T	A	1.165e^-4	0.856	NON_SYNONYMOUS_CODING CG34043
2R	4501903	2R_4501903_SNP [dm3] 2R_8614398_SNP [dm6]	G	A	1.170e^-4	0.856	UPSTREAM Cirl & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_inv
2L	10895798	2L_10895798_SNP [dm3] 2L_10895798_SNP [dm6]	C	T	1.184e^-4	0.856	UPSTREAM CR44491 INTERGENIC
2R	3532937	2R_3532937_SNP [dm3] 2R_7645432_SNP [dm6]	A	T	1.185e^-4	0.856	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340
X	15860198	X_15860198_SNP [dm3] X_15966165_SNP [dm6]	G	C	1.189e^-4	0.856	UPSTREAM mir-927 INTRON mmd
3L	11389600	3L_11389600_SNP [dm3] 3L_11396500_SNP [dm6]	C	A	1.192e^-4	0.856	DOWNSTREAM CG11726 INTERGENIC
2L	21831873	2L_21831873_SNP [dm3] 2L_21831873_SNP [dm6]	A	G	1.199e^-4	0.856	INTRON tsh	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_inv
X	12144915	X_12144915_SNP [dm3] X_12250882_SNP [dm6]	A	T	1.206e^-4	0.856	INTRON Ten-a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	6278932	2R_6278932_SNP [dm3] 2R_10391427_SNP [dm6]	C	A	1.224e^-4	0.856	INTRON CG42732
2R	18290492	2R_18290492_SNP [dm3] 2R_22402987_SNP [dm6]	G	T	1.230e^-4	0.856	UPSTREAM babos EXON CR44760	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	12266372	X_12266372_SNP [dm3] X_12372339_SNP [dm6]	A	G	1.256e^-4	0.856	UPSTREAM CG2577 INTERGENIC
3R	25318046	3R_25318046_SNP [dm3] 3R_29492324_SNP [dm6]	A	C	1.260e^-4	0.856	DOWNSTREAM CG2006 INTRON CG2310	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6017234	2R_6017234_SNP [dm3] 2R_10129729_SNP [dm6]	T	C	1.275e^-4	0.856	INTRON gem
3R	1790810	3R_1790810_SNP [dm3] 3R_5965088_SNP [dm6]	T	C	1.285e^-4	0.856	UPSTREAM CR44925 INTERGENIC
3R	5847134	3R_5847134_SNP [dm3] 3R_10021412_SNP [dm6]	A	T	1.289e^-4	0.856	START_GAINED Mical UTR_5_PRIME Mical INTRON Mical	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10347193	2R_10347193_SNP [dm3] 2R_14459688_SNP [dm6]	T	C	1.294e^-4	0.856	INTRON Oaz
2R	17095193	2R_17095193_SNP [dm3] 2R_21207688_SNP [dm6]	A	T	1.296e^-4	0.856	INTRON CG44245 & 1 other
X	18645723	X_18645723_SNP [dm3] X_18751690_SNP [dm6]	A	G	1.300e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7151221	2L_7151221_SNP [dm3] 2L_7151221_SNP [dm6]	G	C	1.303e^-4	0.856	INTRON Pvf3
3R	19073144	3R_19073144_SNP [dm3] 3R_23247422_SNP [dm6]	A	G	1.317e^-4	0.856	INTRON CG4467
2R	6278988	2R_6278988_SNP [dm3] 2R_10391483_SNP [dm6]	C	T	1.319e^-4	0.856	INTRON CG42732
2L	13354985	2L_13354985_SNP [dm3] 2L_13354985_SNP [dm6]	G	C	1.322e^-4	0.856	UTR_5_PRIME CG9395	TF binding site mE1_TFBS_Trl
3R	13103400	3R_13103400_SNP [dm3] 3R_17277678_SNP [dm6]	A	G	1.322e^-4	0.856	INTERGENIC
2R	18310783	2R_18310783_SNP [dm3] 2R_22423278_SNP [dm6]	T	C	1.323e^-4	0.856	INTRON rad50
2R	12116981	2R_12116981_SNP [dm3] 2R_16229476_SNP [dm6]	C	T	1.329e^-4	0.856	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14150720	2R_14150720_SNP [dm3] 2R_18263215_SNP [dm6]	A	C	1.343e^-4	0.856	INTERGENIC
2R	12696827	2R_12696827_SNP [dm3] 2R_16809322_SNP [dm6]	C	A	1.346e^-4	0.856	INTERGENIC
3L	7484493	3L_7484493_SNP [dm3] 3L_7491393_SNP [dm6]	C	T	1.354e^-4	0.856	UPSTREAM Cyp316a1 INTERGENIC
X	21116232	X_21116232_SNP [dm3] X_21245205_SNP [dm6]	T	C	1.357e^-4	0.856	INTRON CG32521
3L	13483153	3L_13483153_SNP [dm3] 3L_13490053_SNP [dm6]	A	C	1.361e^-4	0.856	INTRON Tgi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3L	2155543	3L_2155543_SNP [dm3] 3L_2155543_SNP [dm6]	T	G	1.375e^-4	0.856	INTRON CG15822
3L	2518195	3L_2518195_SNP [dm3] 3L_2518195_SNP [dm6]	A	G	1.390e^-4	0.856	INTRON Spn & 1 other
2L	11766653	2L_11766653_SNP [dm3] 2L_11766653_SNP [dm6]	C	A	1.404e^-4	0.856	INTERGENIC
2R	11327929	2R_11327929_SNP [dm3] 2R_15440424_SNP [dm6]	G	T	1.412e^-4	0.856	INTRON CG43729
2L	19209731	2L_19209731_SNP [dm3] 2L_19209731_SNP [dm6]	T	C	1.417e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16864219	2R_16864219_SNP [dm3] 2R_20976714_SNP [dm6]	G	A	1.418e^-4	0.856	UPSTREAM CG9344 DOWNSTREAM CG15650 INTRON CG34115	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	20355730	2R_20355730_SNP [dm3] 2R_24468207_SNP [dm6]	C	T	1.418e^-4	0.856	INTRON CG13579
2L	3126404	2L_3126404_SNP [dm3] 2L_3126404_SNP [dm6]	G	A	1.419e^-4	0.856	NON_SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	20215638	X_20215638_SNP [dm3] X_20344611_SNP [dm6]	G	A	1.422e^-4	0.856	INTERGENIC
X	19870082	X_19870082_DEL [dm3] X_19976049_DEL [dm6]	TTTGT	T	1.423e^-4	0.856	INTERGENIC
2R	19457715	2R_19457715_SNP [dm3] 2R_23570192_SNP [dm6]	C	T	1.424e^-4	0.856	INTRON apt
3L	11544601	3L_11544601_SNP [dm3] 3L_11551501_SNP [dm6]	T	A	1.428e^-4	0.856	INTRON Mob2	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	7074669	2L_7074669_DEL [dm3] 2L_7074669_DEL [dm6]	CGTGGCGGCC	AA	1.436e^-4	0.856	INTRON Pvf2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	15291616	X_15291616_SNP [dm3] X_15397583_SNP [dm6]	G	A	1.437e^-4	0.856	SPLICE_SITE_REGION Cngl INTRON Cngl	TF binding site mE1_TFBS_chinmo
2L	964006	2L_964006_SNP [dm3] 2L_964006_SNP [dm6]	C	G	1.439e^-4	0.856	INTERGENIC
2L	12993979	2L_12993979_SNP [dm3] 2L_12993979_SNP [dm6]	A	G	1.445e^-4	0.856	UTR_3_PRIME CG12404
2L	16717293	2L_16717293_SNP [dm3] 2L_16717293_SNP [dm6]	T	A	1.450e^-4	0.856	INTRON Cyt-c-d
2R	8137710	2R_8137710_SNP [dm3] 2R_12250205_SNP [dm6]	C	A	1.451e^-4	0.856	INTERGENIC
2L	10296125	2L_10296125_SNP [dm3] 2L_10296125_SNP [dm6]	G	A	1.454e^-4	0.856	UPSTREAM Hand INTRON CYLD	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn
2R	19440400	2R_19440400_INS [dm3] 2R_23552877_INS [dm6]	T	TGAT	1.462e^-4	0.856	INTRON pita & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	17193388	3L_17193388_SNP [dm3] 3L_17200288_SNP [dm6]	T	A	1.462e^-4	0.856	INTRON Rbp6
3R	8587669	3R_8587669_SNP [dm3] 3R_12761947_SNP [dm6]	G	C	1.462e^-4	0.856	INTRON beat-Vc
3L	22110332	3L_22110332_SNP [dm3] 3L_22117232_SNP [dm6]	C	G	1.463e^-4	0.856	INTERGENIC
3L	3563644	3L_3563644_SNP [dm3] 3L_3563644_SNP [dm6]	A	G	1.469e^-4	0.856	INTRON Eip63E
3R	952795	3R_952795_SNP [dm3] 3R_5127073_SNP [dm6]	T	C	1.481e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	10543785	X_10543785_SNP [dm3] X_10649752_SNP [dm6]	T	C	1.508e^-4	0.856	INTRON X11Lbeta
3L	3547671	3L_3547671_SNP [dm3] 3L_3547671_SNP [dm6]	T	C	1.510e^-4	0.856	INTRON Eip63E
2L	14843549	2L_14843549_SNP [dm3] 2L_14843549_SNP [dm6]	C	G	1.513e^-4	0.856	DOWNSTREAM CG42682 INTERGENIC
3L	8547910	3L_8547910_SNP [dm3] 3L_8554810_SNP [dm6]	T	C	1.514e^-4	0.856	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13469273	3R_13469273_SNP [dm3] 3R_17643551_SNP [dm6]	T	C	1.517e^-4	0.856	INTRON CG43175
3L	18994463	3L_18994463_SNP [dm3] 3L_19001363_SNP [dm6]	G	C	1.527e^-4	0.856	NON_SYNONYMOUS_CODING CG18136 UPSTREAM CG3808
3R	21391692	3R_21391692_SNP [dm3] 3R_25565970_SNP [dm6]	A	G	1.527e^-4	0.856	INTRON msi
3R	14127625	3R_14127625_SNP [dm3] 3R_18301903_SNP [dm6]	A	G	1.531e^-4	0.856	UPSTREAM CG18600 DOWNSTREAM CG7126 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	11899483	2R_11899483_SNP [dm3] 2R_16011978_SNP [dm6]	T	C	1.537e^-4	0.856	UTR_5_PRIME CG8389 UPSTREAM CG8388	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Ubx
3R	26963749	3R_26963749_SNP [dm3] 3R_31138027_SNP [dm6]	T	C	1.538e^-4	0.856	INTRON Gycbeta100B
3R	18479994	3R_18479994_SNP [dm3] 3R_22654272_SNP [dm6]	C	T	1.546e^-4	0.856	INTRON CG45058
X	20215452	X_20215452_INS [dm3] X_20344425_INS [dm6]	AC	TTATGCCG	1.547e^-4	0.856	INTERGENIC
X	21114770	X_21114770_SNP [dm3] X_21243743_SNP [dm6]	A	T	1.548e^-4	0.856	INTRON CG32521
2R	13541294	2R_13541294_SNP [dm3] 2R_17653789_SNP [dm6]	T	A	1.549e^-4	0.856	INTRON CCHa1-R
2R	6567949	2R_6567949_SNP [dm3] 2R_10680444_SNP [dm6]	A	C	1.564e^-4	0.856	INTRON stan	TF binding site mE1_TFBS_Trl
2L	11765498	2L_11765498_SNP [dm3] 2L_11765498_SNP [dm6]	A	G	1.568e^-4	0.856	INTERGENIC
2R	14510168	2R_14510168_SNP [dm3] 2R_18622663_SNP [dm6]	T	C	1.568e^-4	0.856	SYNONYMOUS_CODING CG5335 INTRON Atg7	TF binding site mE1_TFBS_HSA
2L	10280653	2L_10280653_SNP [dm3] 2L_10280653_SNP [dm6]	A	T	1.571e^-4	0.856	NON_SYNONYMOUS_CODING CG34043
3R	27086152	3R_27086152_SNP [dm3] 3R_31260430_SNP [dm6]	A	T	1.581e^-4	0.856	NON_SYNONYMOUS_CODING CG18672 DOWNSTREAM CG3669
2L	15120130	2L_15120130_SNP [dm3] 2L_15120130_SNP [dm6]	C	G	1.583e^-4	0.856	EXON CR43853
X	5058704	X_5058704_SNP [dm3] X_5164671_SNP [dm6]	T	C	1.587e^-4	0.856	UTR_5_PRIME CG15465 & 1 other UPSTREAM CG15465 & 1 other INTRON rg	TF binding site mE1_TFBS_Trl
3R	25966419	3R_25966419_DEL [dm3] 3R_30140697_DEL [dm6]	CG	C	1.588e^-4	0.856	INTRON AdoR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	13501777	X_13501777_SNP [dm3] X_13607744_SNP [dm6]	C	T	1.588e^-4	0.856	SYNONYMOUS_CODING CG11178	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5130756	3L_5130756_SNP [dm3] 3L_5137656_SNP [dm6]	G	T	1.589e^-4	0.856	SYNONYMOUS_CODING CG4611 DOWNSTREAM Prpk	TF binding site mE1_TFBS_chinmo
2L	12923423	2L_12923423_SNP [dm3] 2L_12923423_SNP [dm6]	T	G	1.589e^-4	0.856	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
3R	12364673	3R_12364673_SNP [dm3] 3R_16538951_SNP [dm6]	C	G	1.595e^-4	0.856	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_h mE1_TFBS_HSA
2R	7945612	2R_7945612_INS [dm3] 2R_12058107_INS [dm6]	A	AA	1.599e^-4	0.856	INTRON Drep-3
X	21233362	X_21233362_SNP [dm3] X_21362335_SNP [dm6]	C	T	1.605e^-4	0.856	UPSTREAM waw & 1 other DOWNSTREAM Sep1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	15842744	3L_15842744_INS [dm3] 3L_15849644_INS [dm6]	T	TTCGTAT	1.605e^-4	0.856	UTR_3_PRIME pHCl	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	21535899	3L_21535899_SNP [dm3] 3L_21542799_SNP [dm6]	G	A	1.606e^-4	0.856	NON_SYNONYMOUS_CODING CG33290
2R	12257739	2R_12257739_SNP [dm3] 2R_16370234_SNP [dm6]	G	C	1.627e^-4	0.856	INTERGENIC
2R	9308749	2R_9308749_SNP [dm3] 2R_13421244_SNP [dm6]	A	G	1.631e^-4	0.856	SYNONYMOUS_CODING CG42321
2R	18290401	2R_18290401_SNP [dm3] 2R_22402896_SNP [dm6]	G	A	1.635e^-4	0.856	UPSTREAM babos EXON CR44760	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	24718586	3R_24718586_SNP [dm3] 3R_28892864_SNP [dm6]	C	A	1.657e^-4	0.856	INTRON Doa
2L	15176387	2L_15176387_SNP [dm3] 2L_15176387_SNP [dm6]	C	T	1.669e^-4	0.856	INTRON CG4168
3R	26063242	3R_26063242_SNP [dm3] 3R_30237520_SNP [dm6]	A	C	1.670e^-4	0.856	SPLICE_SITE_REGION CG43448 INTRON CG43448	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1646170	3L_1646170_SNP [dm3] 3L_1646170_SNP [dm6]	G	A	1.672e^-4	0.856	SYNONYMOUS_CODING CG17249 UPSTREAM alphaCOP DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6951426	2R_6951426_SNP [dm3] 2R_11063921_SNP [dm6]	C	G	1.673e^-4	0.856	INTRON luna	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19401996	2L_19401996_SNP [dm3] 2L_19401996_SNP [dm6]	T	C	1.683e^-4	0.856	INTRON Pax
3R	14338241	3R_14338241_SNP [dm3] 3R_18512519_SNP [dm6]	G	A	1.693e^-4	0.856	INTRON fru
2L	21962090	2L_21962090_SNP [dm3] 2L_21962090_SNP [dm6]	A	G	1.694e^-4	0.856	INTERGENIC
2R	6559604	2R_6559604_SNP [dm3] 2R_10672099_SNP [dm6]	C	A	1.694e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_sens
2L	8466600	2L_8466600_SNP [dm3] 2L_8466600_SNP [dm6]	C	T	1.704e^-4	0.856	UTR_3_PRIME fu2 UPSTREAM d DOWNSTREAM fu2	TF binding site BDTNP1_TFBS_dl
3R	25944442	3R_25944442_SNP [dm3] 3R_30118720_SNP [dm6]	C	T	1.712e^-4	0.856	INTRON sima	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18645726	X_18645726_SNP [dm3] X_18751693_SNP [dm6]	T	C	1.713e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4825613	3R_4825613_SNP [dm3] 3R_8999891_SNP [dm6]	G	A	1.715e^-4	0.856	INTRON CG31100
X	14694859	X_14694859_SNP [dm3] X_14800826_SNP [dm6]	A	G	1.721e^-4	0.856	SYNONYMOUS_CODING rut
3R	5149276	3R_5149276_SNP [dm3] 3R_9323554_SNP [dm6]	C	T	1.729e^-4	0.856	INTRON CG8861
3L	17569898	3L_17569898_SNP [dm3] 3L_17576798_SNP [dm6]	C	T	1.730e^-4	0.856	UPSTREAM Eip74EF INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	2573880	X_2573880_SNP [dm3] X_2679847_SNP [dm6]	A	T	1.731e^-4	0.856	DOWNSTREAM HLH3B & 1 other INTERGENIC
2R	18452869	2R_18452869_SNP [dm3] 2R_22565364_SNP [dm6]	A	T	1.734e^-4	0.856	INTRON dnr1	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	13101812	3R_13101812_SNP [dm3] 3R_17276090_SNP [dm6]	T	A	1.737e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16239657	2L_16239657_SNP [dm3] 2L_16239657_SNP [dm6]	C	T	1.738e^-4	0.856	INTRON CG42817
3L	23586018	3L_23586018_SNP [dm3] 3L_23592918_SNP [dm6]	T	G	1.739e^-4	0.856	INTRON AGO3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	15675227	2R_15675227_SNP [dm3] 2R_19787722_SNP [dm6]	A	C	1.740e^-4	0.856	EXON CR45231
X	19873199	X_19873199_INS [dm3] X_19979166_INS [dm6]	T	TCTGTAGTT	1.740e^-4	0.856	INTERGENIC
3R	19073051	3R_19073051_SNP [dm3] 3R_23247329_SNP [dm6]	A	T	1.743e^-4	0.856	INTRON CG4467
2L	11775424	2L_11775424_SNP [dm3] 2L_11775424_SNP [dm6]	T	G	1.746e^-4	0.856	INTERGENIC
X	19870093	X_19870093_SNP [dm3] X_19976060_SNP [dm6]	A	T	1.752e^-4	0.856	INTERGENIC
2L	14954308	2L_14954308_SNP [dm3] 2L_14954308_SNP [dm6]	G	C	1.756e^-4	0.856	INTRON CG42313
2L	16459542	2L_16459542_SNP [dm3] 2L_16459542_SNP [dm6]	A	G	1.764e^-4	0.856	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	19232230	X_19232230_SNP [dm3] X_19338197_SNP [dm6]	A	G	1.765e^-4	0.856	INTRON nAChRalpha7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_zfh1
X	19232233	X_19232233_SNP [dm3] X_19338200_SNP [dm6]	T	A	1.765e^-4	0.856	INTRON nAChRalpha7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_zfh1
3R	25283460	3R_25283460_SNP [dm3] 3R_29457738_SNP [dm6]	A	G	1.770e^-4	0.856	INTRON Ptp99A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7586241	2L_7586241_DEL [dm3] 2L_7586241_DEL [dm6]	GG	G	1.804e^-4	0.856	INTERGENIC
3R	25317005	3R_25317005_MNP [dm3] 3R_29491283_MNP [dm6]	TTTA	GCAT	1.808e^-4	0.856	UTR_3_PRIME CG2006 UPSTREAM Spase12 DOWNSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	11767411	2L_11767411_SNP [dm3] 2L_11767411_SNP [dm6]	T	C	1.811e^-4	0.856	INTERGENIC
2R	19460780	2R_19460780_SNP [dm3] 2R_23573257_SNP [dm6]	T	G	1.815e^-4	0.856	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	3547802	3L_3547802_SNP [dm3] 3L_3547802_SNP [dm6]	C	A	1.815e^-4	0.856	INTRON Eip63E
X	18464310	X_18464310_SNP [dm3] X_18570277_SNP [dm6]	C	T	1.821e^-4	0.856	INTRON Bx	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
3R	16008284	3R_16008284_SNP [dm3] 3R_20182562_SNP [dm6]	T	C	1.826e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	19873291	X_19873291_INS [dm3] X_19979258_INS [dm6]	T	TTGATGT	1.832e^-4	0.856	INTERGENIC
2L	4329102	2L_4329102_SNP [dm3] 2L_4329102_SNP [dm6]	T	C	1.836e^-4	0.856	SYNONYMOUS_CODING CG16857	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14121064	X_14121064_SNP [dm3] X_14227031_SNP [dm6]	G	A	1.836e^-4	0.856	SYNONYMOUS_CODING mRpL38	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16245081	3L_16245081_SNP [dm3] 3L_16251981_SNP [dm6]	G	T	1.837e^-4	0.856	SYNONYMOUS_CODING CG13055	TF binding site mE1_TFBS_chinmo
2L	10790260	2L_10790260_SNP [dm3] 2L_10790260_SNP [dm6]	T	G	1.864e^-4	0.856	UTR_5_PRIME CG31870 INTRON CG31869
3L	1446740	3L_1446740_SNP [dm3] 3L_1446740_SNP [dm6]	C	A	1.871e^-4	0.856	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2645879	2L_2645879_DEL [dm3] 2L_2645879_DEL [dm6]	AAGGAAGTC	T	1.873e^-4	0.856	UPSTREAM CR43852 DOWNSTREAM CG9962 INTERGENIC
2L	12112873	2L_12112873_SNP [dm3] 2L_12112873_SNP [dm6]	G	T	1.878e^-4	0.856	DOWNSTREAM Phae2 INTERGENIC
2L	15003125	2L_15003125_SNP [dm3] 2L_15003125_SNP [dm6]	A	G	1.879e^-4	0.856	INTERGENIC
3R	5776277	3R_5776277_SNP [dm3] 3R_9950555_SNP [dm6]	C	T	1.886e^-4	0.856	INTRON Glut4EF
2L	11766661	2L_11766661_DEL [dm3] 2L_11766661_DEL [dm6]	TT	T	1.887e^-4	0.856	INTERGENIC
3L	14345663	3L_14345663_SNP [dm3] 3L_14352563_SNP [dm6]	A	G	1.896e^-4	0.856	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25317012	3R_25317012_SNP [dm3] 3R_29491290_SNP [dm6]	T	A	1.896e^-4	0.856	UTR_3_PRIME CG2006 UPSTREAM Spase12 DOWNSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	9635848	2L_9635848_SNP [dm3] 2L_9635848_SNP [dm6]	T	C	1.907e^-4	0.856	INTRON Apoltp
3L	722584	3L_722584_SNP [dm3] 3L_722584_SNP [dm6]	T	G	1.912e^-4	0.856	INTERGENIC
3L	3624889	3L_3624889_SNP [dm3] 3L_3624889_SNP [dm6]	C	T	1.916e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12113389	2L_12113389_SNP [dm3] 2L_12113389_SNP [dm6]	C	T	1.917e^-4	0.856	UPSTREAM CG17211 INTERGENIC
3R	12077068	3R_12077068_SNP [dm3] 3R_16251346_SNP [dm6]	G	A	1.923e^-4	0.856	INTRON tara	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	8814832	X_8814832_SNP [dm3] X_8920799_SNP [dm6]	A	G	1.932e^-4	0.856	UPSTREAM CR44111 INTRON rdgA
3R	14127375	3R_14127375_SNP [dm3] 3R_18301653_SNP [dm6]	C	T	1.935e^-4	0.856	UTR_5_PRIME CG18600 DOWNSTREAM CG7126	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	5720416	3R_5720416_SNP [dm3] 3R_9894694_SNP [dm6]	T	C	1.936e^-4	0.856	INTRON Glut4EF	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10406227	2L_10406227_SNP [dm3] 2L_10406227_SNP [dm6]	C	T	1.945e^-4	0.856	SYNONYMOUS_CODING Ir31a	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3R	14127469	3R_14127469_SNP [dm3] 3R_18301747_SNP [dm6]	A	G	1.956e^-4	0.856	UPSTREAM CG18600 DOWNSTREAM CG7126 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	25535060	3R_25535060_SNP [dm3] 3R_29709338_SNP [dm6]	G	C	1.962e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8137206	2R_8137206_SNP [dm3] 2R_12249701_SNP [dm6]	T	C	1.972e^-4	0.856	INTERGENIC
3R	10533643	3R_10533643_SNP [dm3] 3R_14707921_SNP [dm6]	G	A	1.984e^-4	0.856	INTRON kibra
3R	7334913	3R_7334913_SNP [dm3] 3R_11509191_SNP [dm6]	C	T	1.985e^-4	0.856	INTERGENIC
3R	26077401	3R_26077401_DEL [dm3] 3R_30251679_DEL [dm6]	GTATG	G	1.988e^-4	0.856	SPLICE_SITE_DONOR CG9682 SPLICE_SITE_REGION CG9682 INTRON CG9682	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
X	18730001	X_18730001_SNP [dm3] X_18835968_SNP [dm6]	A	C	1.989e^-4	0.856	INTRON Pvf1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4081505	3L_4081505_SNP [dm3] 3L_4081505_SNP [dm6]	G	A	1.997e^-4	0.856	INTRON Gad1
X	21233444	X_21233444_SNP [dm3] X_21362417_SNP [dm6]	T	C	2.007e^-4	0.856	UPSTREAM waw & 1 other DOWNSTREAM Sep1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19888102	2R_19888102_SNP [dm3] 2R_24000579_SNP [dm6]	T	G	2.007e^-4	0.856	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11169181	2R_11169181_MNP [dm3] 2R_15281676_MNP [dm6]	TTT	ACC	2.011e^-4	0.856	INTRON Trpm	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18858630	2L_18858630_DEL [dm3] 2L_18858630_DEL [dm6]	AATCGGCGACCAT...	A	2.013e^-4	0.856	UPSTREAM CG10602 DOWNSTREAM tup INTRON CG10602 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
2L	21929216	2L_21929216_SNP [dm3] 2L_21929216_SNP [dm6]	A	G	2.027e^-4	0.856	INTERGENIC
X	1647793	X_1647793_SNP [dm3] X_1753760_SNP [dm6]	A	C	2.039e^-4	0.856	UTR_5_PRIME Scgdelta	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	13501882	X_13501882_SNP [dm3] X_13607849_SNP [dm6]	C	T	2.042e^-4	0.856	SYNONYMOUS_CODING CG11178	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3557778	2R_3557778_SNP [dm3] 2R_7670273_SNP [dm6]	G	T	2.044e^-4	0.856	DOWNSTREAM CG12826 INTERGENIC
3R	4266695	3R_4266695_SNP [dm3] 3R_8440973_SNP [dm6]	G	A	2.045e^-4	0.856	INTRON CG45263
3R	7366241	3R_7366241_SNP [dm3] 3R_11540519_SNP [dm6]	A	G	2.045e^-4	0.856	INTRON dpr4
2R	19024849	2R_19024849_SNP [dm3] 2R_23137326_SNP [dm6]	T	G	2.045e^-4	0.856	INTERGENIC
2R	14694819	2R_14694819_INS [dm3] 2R_18807314_INS [dm6]	A	AA	2.052e^-4	0.856	DOWNSTREAM CR44468 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	2948192	3L_2948192_SNP [dm3] 3L_2948192_SNP [dm6]	A	G	2.053e^-4	0.856	INTRON Shab
X	19873194	X_19873194_INS [dm3] X_19979161_INS [dm6]	T	TT	2.066e^-4	0.856	INTERGENIC
3R	11259783	3R_11259783_INS [dm3] 3R_15434061_INS [dm6]	A	AGA	2.067e^-4	0.856	INTRON CG6118
3L	4787859	3L_4787859_SNP [dm3] 3L_4787859_SNP [dm6]	T	A	2.069e^-4	0.856	INTRON RhoGEF64C
3L	9715763	3L_9715763_SNP [dm3] 3L_9722663_SNP [dm6]	C	T	2.070e^-4	0.856	NON_SYNONYMOUS_CODING nbs UPSTREAM defl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	19339424	2R_19339424_SNP [dm3] 2R_23451901_SNP [dm6]	T	C	2.071e^-4	0.856	INTRON CG43795
2L	964009	2L_964009_SNP [dm3] 2L_964009_SNP [dm6]	C	A	2.074e^-4	0.856	INTERGENIC
2L	3380237	2L_3380237_SNP [dm3] 2L_3380237_SNP [dm6]	G	T	2.077e^-4	0.856	INTERGENIC
3L	20906349	3L_20906349_SNP [dm3] 3L_20913249_SNP [dm6]	C	T	2.083e^-4	0.856	DOWNSTREAM CR45733 EXON CR43930
X	4427868	X_4427868_SNP [dm3] X_4533835_SNP [dm6]	C	A	2.087e^-4	0.856	UTR_3_PRIME CG3556 INTRON CR32773
2R	6278997	2R_6278997_SNP [dm3] 2R_10391492_SNP [dm6]	C	G	2.088e^-4	0.856	INTRON CG42732
2L	1919599	2L_1919599_SNP [dm3] 2L_1919599_SNP [dm6]	A	G	2.088e^-4	0.856	INTRON CG7337
2L	15292420	2L_15292420_SNP [dm3] 2L_15292420_SNP [dm6]	T	A	2.092e^-4	0.856	UPSTREAM ms_2_35Ci & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12111720	2L_12111720_SNP [dm3] 2L_12111720_SNP [dm6]	T	A	2.092e^-4	0.856	SYNONYMOUS_CODING Phae2	TF binding site mE1_TFBS_cad
3L	22683248	3L_22683248_SNP [dm3] 3L_22690148_SNP [dm6]	A	C	2.095e^-4	0.856	INTERGENIC
2L	15147751	2L_15147751_SNP [dm3] 2L_15147751_SNP [dm6]	A	G	2.101e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26063241	3R_26063241_SNP [dm3] 3R_30237519_SNP [dm6]	A	T	2.103e^-4	0.856	INTRON CG43448	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14510324	2R_14510324_SNP [dm3] 2R_18622819_SNP [dm6]	C	A	2.106e^-4	0.856	SYNONYMOUS_CODING CG5335 INTRON Atg7	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6128355	X_6128355_INS [dm3] X_6234322_INS [dm6]	G	GG	2.118e^-4	0.856	UTR_3_PRIME CG14446
2L	10561042	2L_10561042_SNP [dm3] 2L_10561042_SNP [dm6]	A	C	2.119e^-4	0.856	INTRON Trim9
3L	3547646	3L_3547646_SNP [dm3] 3L_3547646_SNP [dm6]	C	T	2.120e^-4	0.856	INTRON Eip63E
3L	18997032	3L_18997032_SNP [dm3] 3L_19003932_SNP [dm6]	T	G	2.131e^-4	0.856	UTR_3_PRIME nkd UPSTREAM CG18136	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
2L	16459622	2L_16459622_SNP [dm3] 2L_16459622_SNP [dm6]	G	A	2.139e^-4	0.856	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	7875188	3L_7875188_SNP [dm3] 3L_7882088_SNP [dm6]	A	T	2.140e^-4	0.856	INTRON CG32365
2L	6405120	2L_6405120_SNP [dm3] 2L_6405120_SNP [dm6]	T	C	2.144e^-4	0.856	INTRON CG42368
X	18645744	X_18645744_SNP [dm3] X_18751711_SNP [dm6]	G	A	2.145e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19169595	2R_19169595_SNP [dm3] 2R_23282072_SNP [dm6]	G	T	2.146e^-4	0.856	DOWNSTREAM CG3124 INTERGENIC
2L	13237831	2L_13237831_INS [dm3] 2L_13237831_INS [dm6]	T	TT	2.154e^-4	0.856	INTRON CG5867
2L	16239654	2L_16239654_SNP [dm3] 2L_16239654_SNP [dm6]	T	C	2.158e^-4	0.856	INTRON CG42817
3R	10237358	3R_10237358_SNP [dm3] 3R_14411636_SNP [dm6]	T	C	2.160e^-4	0.856	INTRON cv-c	TF binding site mE1_TFBS_inv
3L	1419231	3L_1419231_SNP [dm3] 3L_1419231_SNP [dm6]	C	A	2.167e^-4	0.856	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
2L	16733701	2L_16733701_SNP [dm3] 2L_16733701_SNP [dm6]	G	A	2.169e^-4	0.856	UTR_3_PRIME glu DOWNSTREAM CG17904
2L	4924813	2L_4924813_SNP [dm3] 2L_4924813_SNP [dm6]	T	C	2.182e^-4	0.856	INTRON hoe1
2R	19880247	2R_19880247_SNP [dm3] 2R_23992724_SNP [dm6]	A	G	2.183e^-4	0.856	SYNONYMOUS_CODING CG3860 DOWNSTREAM Pask & 1 other
2R	10654646	2R_10654646_SNP [dm3] 2R_14767141_SNP [dm6]	G	C	2.188e^-4	0.856	INTRON Spred
2R	12057200	2R_12057200_SNP [dm3] 2R_16169695_SNP [dm6]	G	A	2.191e^-4	0.856	SYNONYMOUS_CODING CG8435 DOWNSTREAM lbk
X	20267857	X_20267857_SNP [dm3] X_20396830_SNP [dm6]	C	T	2.195e^-4	0.856	INTRON HERC2	TF binding site BDTNP1_TFBS_da
2L	10935862	2L_10935862_SNP [dm3] 2L_10935862_SNP [dm6]	A	G	2.201e^-4	0.856	UPSTREAM CG14072 INTRON dpr2
3R	13359676	3R_13359676_SNP [dm3] 3R_17533954_SNP [dm6]	G	A	2.202e^-4	0.856	START_GAINED CG5823 UTR_5_PRIME CG5823 UPSTREAM P5cr-2 INTRON CG5823	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	17550330	3L_17550330_SNP [dm3] 3L_17557230_SNP [dm6]	G	A	2.215e^-4	0.856	START_GAINED CycT UTR_5_PRIME CycT	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	1630799	X_1630799_SNP [dm3] X_1736766_SNP [dm6]	G	T	2.231e^-4	0.856	UTR_3_PRIME Scgdelta
X	5058495	X_5058495_SNP [dm3] X_5164462_SNP [dm6]	G	A	2.232e^-4	0.856	UTR_5_PRIME CG15465 & 1 other UPSTREAM CG15465 & 1 other INTRON rg	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	4787945	3L_4787945_SNP [dm3] 3L_4787945_SNP [dm6]	A	C	2.244e^-4	0.856	INTRON RhoGEF64C
3R	26982878	3R_26982878_SNP [dm3] 3R_31157156_SNP [dm6]	T	C	2.246e^-4	0.856	DOWNSTREAM stops INTRON Gycbeta100B
2R	18290528	2R_18290528_SNP [dm3] 2R_22403023_SNP [dm6]	T	A	2.248e^-4	0.856	UPSTREAM babos EXON CR44760	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	10343861	2R_10343861_SNP [dm3] 2R_14456356_SNP [dm6]	T	G	2.249e^-4	0.856	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5177863	3L_5177863_SNP [dm3] 3L_5184763_SNP [dm6]	G	A	2.254e^-4	0.856	UTR_5_PRIME shep INTRON shep	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	13954277	2L_13954277_SNP [dm3] 2L_13954277_SNP [dm6]	T	C	2.262e^-4	0.856	INTRON Ance-3
2R	11899822	2R_11899822_SNP [dm3] 2R_16012317_SNP [dm6]	T	C	2.262e^-4	0.856	SYNONYMOUS_CODING CG8389 UPSTREAM CG8388	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_sens
2R	10883830	2R_10883830_SNP [dm3] 2R_14996325_SNP [dm6]	T	C	2.281e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1933002	3L_1933002_SNP [dm3] 3L_1933002_SNP [dm6]	G	A	2.282e^-4	0.856	NON_SYNONYMOUS_CODING Dbx DOWNSTREAM CG5687	TF binding site mE1_TFBS_chinmo
2L	16470031	2L_16470031_SNP [dm3] 2L_16470031_SNP [dm6]	G	T	2.295e^-4	0.856	INTRON dac	regulatory region REDfly_CRMs
2R	11327910	2R_11327910_SNP [dm3] 2R_15440405_SNP [dm6]	T	C	2.298e^-4	0.856	INTRON CG43729
2R	17317549	2R_17317549_SNP [dm3] 2R_21430044_SNP [dm6]	G	A	2.301e^-4	0.856	INTRON Sdc
X	14621998	X_14621998_SNP [dm3] X_14727965_SNP [dm6]	G	A	2.306e^-4	0.856	INTRON NetB
2L	22031469	2L_22031469_SNP [dm3] 2L_22031469_SNP [dm6]	A	G	2.313e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19871357	X_19871357_SNP [dm3] X_19977324_SNP [dm6]	C	A	2.315e^-4	0.856	INTERGENIC
3R	21876370	3R_21876370_SNP [dm3] 3R_26050648_SNP [dm6]	T	G	2.321e^-4	0.856	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	21763435	2L_21763435_SNP [dm3] 2L_21763435_SNP [dm6]	A	T	2.323e^-4	0.856	INTRON CG31612
X	21116655	X_21116655_SNP [dm3] X_21245628_SNP [dm6]	T	A	2.327e^-4	0.856	INTRON CG32521
2L	5080747	2L_5080747_SNP [dm3] 2L_5080747_SNP [dm6]	T	C	2.329e^-4	0.856	INTRON pgant5
X	584100	X_584100_SNP [dm3] X_690067_SNP [dm6]	C	G	2.337e^-4	0.856	INTRON sdk	TF binding site BDTNP1_TFBS_da
2R	13530192	2R_13530192_SNP [dm3] 2R_17642687_SNP [dm6]	C	A	2.362e^-4	0.856	INTERGENIC
3L	9716431	3L_9716431_SNP [dm3] 3L_9723331_SNP [dm6]	A	C	2.369e^-4	0.856	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12076960	2R_12076960_SNP [dm3] 2R_16189455_SNP [dm6]	A	C	2.371e^-4	0.856	SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18762886	3R_18762886_SNP [dm3] 3R_22937164_SNP [dm6]	T	C	2.377e^-4	0.856	INTRON klg
2L	3127119	2L_3127119_SNP [dm3] 2L_3127119_SNP [dm6]	A	G	2.381e^-4	0.856	SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	5838910	3R_5838910_SNP [dm3] 3R_10013188_SNP [dm6]	A	G	2.383e^-4	0.856	SYNONYMOUS_CODING Mical INTRON Mical
3R	26042451	3R_26042451_SNP [dm3] 3R_30216729_SNP [dm6]	A	T	2.390e^-4	0.856	INTRON CecC
2R	8446164	2R_8446164_SNP [dm3] 2R_12558659_SNP [dm6]	C	T	2.399e^-4	0.856	SYNONYMOUS_CODING fra INTRON fra
2L	1696416	2L_1696416_SNP [dm3] 2L_1696416_SNP [dm6]	A	G	2.401e^-4	0.856	SYNONYMOUS_CODING chinmo UTR_3_PRIME chinmo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	5645675	3R_5645675_INS [dm3] 3R_9819953_INS [dm6]	G	GGG	2.414e^-4	0.856	UPSTREAM CG9458 DOWNSTREAM CG42857 INTERGENIC
2R	9113305	2R_9113305_SNP [dm3] 2R_13225800_SNP [dm6]	T	C	2.423e^-4	0.856	INTRON Dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	12687556	2R_12687556_SNP [dm3] 2R_16800051_SNP [dm6]	C	A	2.427e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	19468540	2L_19468540_INS [dm3] 2L_19468540_INS [dm6]	C	CT	2.428e^-4	0.856	UPSTREAM CR45722 DOWNSTREAM tj INTERGENIC
3R	15263482	3R_15263482_SNP [dm3] 3R_19437760_SNP [dm6]	T	C	2.446e^-4	0.856	INTRON CG31221
X	21233956	X_21233956_SNP [dm3] X_21362929_SNP [dm6]	C	T	2.447e^-4	0.856	UPSTREAM waw & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu
2L	10280162	2L_10280162_SNP [dm3] 2L_10280162_SNP [dm6]	T	C	2.459e^-4	0.856	SYNONYMOUS_CODING CG34043
2R	3577918	2R_3577918_SNP [dm3] 2R_7690413_SNP [dm6]	T	C	2.475e^-4	0.856	INTRON CG1399
2R	9308636	2R_9308636_SNP [dm3] 2R_13421131_SNP [dm6]	A	G	2.486e^-4	0.856	SYNONYMOUS_CODING CG42321
X	19315413	X_19315413_SNP [dm3] X_19421380_SNP [dm6]	T	G	2.491e^-4	0.856	INTRON kek5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19869871	X_19869871_SNP [dm3] X_19975838_SNP [dm6]	C	T	2.506e^-4	0.856	INTERGENIC
X	21233907	X_21233907_SNP [dm3] X_21362880_SNP [dm6]	G	T	2.506e^-4	0.856	UPSTREAM waw & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu
2R	11723200	2R_11723200_SNP [dm3] 2R_15835695_SNP [dm6]	C	T	2.519e^-4	0.856	UPSTREAM Poxn INTRON tun	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	10385328	2L_10385328_SNP [dm3] 2L_10385328_SNP [dm6]	A	T	2.531e^-4	0.856	SYNONYMOUS_CODING cdc2 DOWNSTREAM CG5096	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	5924065	3R_5924065_SNP [dm3] 3R_10098343_SNP [dm6]	T	A	2.547e^-4	0.856	EXON CR43459
3L	20850935	3L_20850935_SNP [dm3] 3L_20857835_SNP [dm6]	T	A	2.554e^-4	0.856	INTRON CG32432
3L	14314146	3L_14314146_SNP [dm3] 3L_14321046_SNP [dm6]	T	G	2.562e^-4	0.856	INTRON fz
3L	8532579	3L_8532579_SNP [dm3] 3L_8539479_SNP [dm6]	T	A	2.564e^-4	0.856	INTERGENIC
2R	18033022	2R_18033022_SNP [dm3] 2R_22145517_SNP [dm6]	C	T	2.576e^-4	0.856	INTRON a
3R	13175133	3R_13175133_SNP [dm3] 3R_17349411_SNP [dm6]	A	C	2.580e^-4	0.856	INTRON beat-IIa
2L	18628442	2L_18628442_SNP [dm3] 2L_18628442_SNP [dm6]	A	G	2.580e^-4	0.856	INTRON MESR3	TF binding site BDTNP1_TFBS_dl
2R	2951040	2R_2951040_SNP [dm3] 2R_7063535_SNP [dm6]	C	G	2.583e^-4	0.856	UTR_5_PRIME Tsp42Eq UPSTREAM Tsp42Er	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26686669	3R_26686669_SNP [dm3] 3R_30860947_SNP [dm6]	G	C	2.585e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4147037	2L_4147037_SNP [dm3] 2L_4147037_SNP [dm6]	A	T	2.585e^-4	0.856	INTERGENIC
2L	13760316	2L_13760316_SNP [dm3] 2L_13760316_SNP [dm6]	A	T	2.587e^-4	0.856	INTRON TM9SF4
2L	11766640	2L_11766640_SNP [dm3] 2L_11766640_SNP [dm6]	C	A	2.593e^-4	0.856	INTERGENIC
X	598373	X_598373_SNP [dm3] X_704340_SNP [dm6]	G	A	2.597e^-4	0.856	INTRON sdk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9959340	3R_9959340_SNP [dm3] 3R_14133618_SNP [dm6]	C	T	2.601e^-4	0.856	INTERGENIC
2L	15429462	2L_15429462_SNP [dm3] 2L_15429462_SNP [dm6]	C	G	2.607e^-4	0.856	INTERGENIC
2L	10803726	2L_10803726_SNP [dm3] 2L_10803726_SNP [dm6]	T	C	2.607e^-4	0.856	UPSTREAM CR44581 DOWNSTREAM Nos INTERGENIC
3R	26804282	3R_26804282_SNP [dm3] 3R_30978560_SNP [dm6]	G	A	2.610e^-4	0.856	INTRON 5-HT7
2L	3694227	2L_3694227_SNP [dm3] 2L_3694227_SNP [dm6]	A	C	2.623e^-4	0.856	UPSTREAM Acp24A4 DOWNSTREAM CG43165 & 1 other EXON CR43364
2R	12269526	2R_12269526_SNP [dm3] 2R_16382021_SNP [dm6]	A	C	2.625e^-4	0.856	UTR_3_PRIME CG43187 DOWNSTREAM CG43187
X	2254928	X_2254928_DEL [dm3] X_2360895_DEL [dm6]	TT	T	2.625e^-4	0.856	INTRON ptr
X	892036	X_892036_SNP [dm3] X_998003_SNP [dm6]	T	A	2.648e^-4	0.856	INTERGENIC
2R	19024800	2R_19024800_SNP [dm3] 2R_23137277_SNP [dm6]	G	A	2.655e^-4	0.856	INTERGENIC
3L	20907418	3L_20907418_SNP [dm3] 3L_20914318_SNP [dm6]	C	A	2.662e^-4	0.856	UPSTREAM CR43930 INTERGENIC
2L	16239646	2L_16239646_SNP [dm3] 2L_16239646_SNP [dm6]	T	C	2.669e^-4	0.856	INTRON CG42817
3L	3850229	3L_3850229_SNP [dm3] 3L_3850229_SNP [dm6]	T	C	2.674e^-4	0.856	INTRON Awh
3R	14127603	3R_14127603_SNP [dm3] 3R_18301881_SNP [dm6]	T	G	2.676e^-4	0.856	UPSTREAM CG18600 DOWNSTREAM CG7126 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
X	19055953	X_19055953_DEL [dm3] X_19161920_DEL [dm6]	CC	C	2.679e^-4	0.856	INTRON RhoGAP18B	TF binding site mE1_TFBS_inv
3L	10611706	3L_10611706_SNP [dm3] 3L_10618606_SNP [dm6]	G	T	2.681e^-4	0.856	INTERGENIC
3R	18491028	3R_18491028_DEL [dm3] 3R_22665306_DEL [dm6]	AA	A	2.687e^-4	0.856	INTRON CG45058
X	21116656	X_21116656_SNP [dm3] X_21245629_SNP [dm6]	G	A	2.690e^-4	0.856	INTRON CG32521
2L	21891509	2L_21891509_SNP [dm3] 2L_21891509_SNP [dm6]	G	T	2.690e^-4	0.856	UPSTREAM CR45362 INTERGENIC
2L	18577320	2L_18577320_SNP [dm3] 2L_18577320_SNP [dm6]	G	T	2.691e^-4	0.856	INTRON Pde11
X	18434154	X_18434154_SNP [dm3] X_18540121_SNP [dm6]	C	G	2.702e^-4	0.856	INTRON Bx
2L	21763436	2L_21763436_SNP [dm3] 2L_21763436_SNP [dm6]	A	T	2.716e^-4	0.856	INTRON CG31612
2L	4929206	2L_4929206_SNP [dm3] 2L_4929206_SNP [dm6]	A	G	2.720e^-4	0.856	UPSTREAM hoe1 INTRON hoe1
2R	7075483	2R_7075483_SNP [dm3] 2R_11187978_SNP [dm6]	G	A	2.724e^-4	0.856	INTRON shn	TF binding site BDTNP1_TFBS_twi
X	17078271	X_17078271_SNP [dm3] X_17184238_SNP [dm6]	T	C	2.726e^-4	0.856	UPSTREAM CR44026 INTRON baz
2L	2950584	2L_2950584_SNP [dm3] 2L_2950584_SNP [dm6]	G	A	2.728e^-4	0.856	SYNONYMOUS_CODING lilli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3500197	2L_3500197_SNP [dm3] 2L_3500197_SNP [dm6]	C	T	2.739e^-4	0.856	SYNONYMOUS_CODING tim DOWNSTREAM tim
2R	16864584	2R_16864584_SNP [dm3] 2R_20977079_SNP [dm6]	G	A	2.741e^-4	0.856	UTR_5_PRIME CG9344 DOWNSTREAM CG15650 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	20906326	3L_20906326_SNP [dm3] 3L_20913226_SNP [dm6]	G	A	2.744e^-4	0.856	DOWNSTREAM CR45733 EXON CR43930
3R	19349016	3R_19349016_SNP [dm3] 3R_23523294_SNP [dm6]	A	T	2.750e^-4	0.856	INTRON CG10175	TF binding site mE1_TFBS_bab1
3L	9788981	3L_9788981_SNP [dm3] 3L_9795881_SNP [dm6]	A	T	2.751e^-4	0.856	INTRON Zasp67
3R	14127633	3R_14127633_SNP [dm3] 3R_18301911_SNP [dm6]	T	A	2.755e^-4	0.856	UPSTREAM CG18600 DOWNSTREAM CG7126 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	21421582	3R_21421582_SNP [dm3] 3R_25595860_SNP [dm6]	G	A	2.758e^-4	0.856	INTRON ymp & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2645904	2L_2645904_SNP [dm3] 2L_2645904_SNP [dm6]	G	A	2.761e^-4	0.856	UPSTREAM CR43852 DOWNSTREAM CG9962 INTERGENIC
3R	12077052	3R_12077052_SNP [dm3] 3R_16251330_SNP [dm6]	T	A	2.768e^-4	0.856	INTRON tara	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	9964607	3R_9964607_SNP [dm3] 3R_14138885_SNP [dm6]	A	G	2.768e^-4	0.856	INTERGENIC
3R	11856703	3R_11856703_SNP [dm3] 3R_16030981_SNP [dm6]	A	G	2.790e^-4	0.856	INTRON pnr
2R	11901585	2R_11901585_SNP [dm3] 2R_16014080_SNP [dm6]	G	A	2.793e^-4	0.856	UPSTREAM Rrp42 DOWNSTREAM CG8389 INTRON Prosbeta1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_cnc
X	8154885	X_8154885_SNP [dm3] X_8260852_SNP [dm6]	C	T	2.793e^-4	0.856	INTRON CG1632
2L	13528486	2L_13528486_SNP [dm3] 2L_13528486_SNP [dm6]	T	C	2.796e^-4	0.856	SYNONYMOUS_CODING CG33640 UPSTREAM CG33641 INTRON B4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2408537	X_2408537_SNP [dm3] X_2514504_SNP [dm6]	G	T	2.803e^-4	0.856	INTRON trol
3R	13104181	3R_13104181_SNP [dm3] 3R_17278459_SNP [dm6]	G	C	2.816e^-4	0.856	INTERGENIC
3R	14030411	3R_14030411_SNP [dm3] 3R_18204689_SNP [dm6]	G	A	2.824e^-4	0.856	INTRON CG7985
X	18378560	X_18378560_SNP [dm3] X_18484527_SNP [dm6]	C	G	2.826e^-4	0.856	UTR_3_PRIME psh UPSTREAM Hayan
X	15281434	X_15281434_SNP [dm3] X_15387401_SNP [dm6]	A	G	2.836e^-4	0.856	UTR_3_PRIME Cngl
2L	12101504	2L_12101504_SNP [dm3] 2L_12101504_SNP [dm6]	T	C	2.838e^-4	0.856	SYNONYMOUS_CODING Patsas DOWNSTREAM Ced-12
2R	11575325	2R_11575325_SNP [dm3] 2R_15687820_SNP [dm6]	T	G	2.845e^-4	0.856	NON_SYNONYMOUS_CODING Cep89 DOWNSTREAM Ranbp11	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3946220	3L_3946220_SNP [dm3] 3L_3946220_SNP [dm6]	A	G	2.846e^-4	0.856	UTR_3_PRIME CG14982	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8154880	X_8154880_SNP [dm3] X_8260847_SNP [dm6]	C	T	2.852e^-4	0.856	INTRON CG1632
3L	9716369	3L_9716369_SNP [dm3] 3L_9723269_SNP [dm6]	T	C	2.853e^-4	0.856	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	14121085	X_14121085_SNP [dm3] X_14227052_SNP [dm6]	C	A	2.856e^-4	0.856	SYNONYMOUS_CODING mRpL38	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12682543	2L_12682543_DEL [dm3] 2L_12682543_DEL [dm6]	CTTA	C	2.857e^-4	0.856	INTRON pdm2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	12682550	2L_12682550_SNP [dm3] 2L_12682550_SNP [dm6]	T	A	2.857e^-4	0.856	INTRON pdm2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	10532404	2L_10532404_SNP [dm3] 2L_10532404_SNP [dm6]	T	C	2.884e^-4	0.856	SYNONYMOUS_CODING CG18301 DOWNSTREAM Lip4
2R	10925619	2R_10925619_SNP [dm3] 2R_15038114_SNP [dm6]	A	G	2.886e^-4	0.856	INTRON hbs
2L	10666817	2L_10666817_SNP [dm3] 2L_10666817_SNP [dm6]	T	G	2.898e^-4	0.856	INTRON CG31871
2L	10280525	2L_10280525_SNP [dm3] 2L_10280525_SNP [dm6]	G	A	2.903e^-4	0.856	SYNONYMOUS_CODING CG34043
X	19600198	X_19600198_SNP [dm3] X_19706165_SNP [dm6]	T	C	2.917e^-4	0.856	DOWNSTREAM meso18E INTRON CG14230	TF binding site mE1_TFBS_cad
2R	13588232	2R_13588232_SNP [dm3] 2R_17700727_SNP [dm6]	A	T	2.918e^-4	0.856	UPSTREAM snoRNA:U76:54Eb & 4 others DOWNSTREAM snoRNA:Me28S-A3407a & 3 others INTRON Uhg1
3R	12589087	3R_12589087_DEL [dm3] 3R_16763365_DEL [dm6]	TT	T	2.926e^-4	0.856	DOWNSTREAM tre-3 & 1 other INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	16868926	2R_16868926_SNP [dm3] 2R_20981421_SNP [dm6]	T	C	2.935e^-4	0.856	SYNONYMOUS_CODING CG9313	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9631231	2L_9631231_SNP [dm3] 2L_9631231_SNP [dm6]	G	T	2.942e^-4	0.856	INTERGENIC
3L	9319410	3L_9319410_SNP [dm3] 3L_9326310_SNP [dm6]	T	A	2.944e^-4	0.856	INTERGENIC
3L	7470072	3L_7470072_SNP [dm3] 3L_7476972_SNP [dm6]	T	A	2.949e^-4	0.856	DOWNSTREAM CG43292 INTERGENIC
3R	10743010	3R_10743010_SNP [dm3] 3R_14917288_SNP [dm6]	T	C	2.951e^-4	0.856	INTERGENIC
3R	20606740	3R_20606740_SNP [dm3] 3R_24781018_SNP [dm6]	T	C	2.952e^-4	0.856	SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	8136797	2R_8136797_SNP [dm3] 2R_12249292_SNP [dm6]	G	A	2.964e^-4	0.856	INTERGENIC
2L	7934932	2L_7934932_SNP [dm3] 2L_7934932_SNP [dm6]	A	C	2.969e^-4	0.856	INTRON Snoo
2L	795526	2L_795526_SNP [dm3] 2L_795526_SNP [dm6]	C	T	2.974e^-4	0.856	INTERGENIC
3L	10611703	3L_10611703_SNP [dm3] 3L_10618603_SNP [dm6]	A	T	2.976e^-4	0.856	INTERGENIC
2R	15263117	2R_15263117_SNP [dm3] 2R_19375612_SNP [dm6]	C	A	2.983e^-4	0.856	UTR_5_PRIME CG10062
3R	14127639	3R_14127639_SNP [dm3] 3R_18301917_SNP [dm6]	T	A	2.991e^-4	0.856	UPSTREAM CG18600 DOWNSTREAM CG7126 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	12682739	2L_12682739_SNP [dm3] 2L_12682739_SNP [dm6]	A	T	2.994e^-4	0.856	INTRON pdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	16619019	2L_16619019_SNP [dm3] 2L_16619019_SNP [dm6]	T	A	3.001e^-4	0.856	INTRON CG42389	TF binding site BDTNP1_TFBS_dl
X	16156479	X_16156479_SNP [dm3] X_16262446_SNP [dm6]	A	C	3.001e^-4	0.856	INTERGENIC
2L	9487625	2L_9487625_SNP [dm3] 2L_9487625_SNP [dm6]	G	C	3.002e^-4	0.856	INTERGENIC
2R	10449226	2R_10449226_SNP [dm3] 2R_14561721_SNP [dm6]	G	C	3.005e^-4	0.856	INTRON ttv
2L	16764957	2L_16764957_SNP [dm3] 2L_16764957_SNP [dm6]	C	G	3.009e^-4	0.856	INTERGENIC	regulatory region REDfly_CRMs
3R	15392288	3R_15392288_SNP [dm3] 3R_19566566_SNP [dm6]	T	G	3.010e^-4	0.856	INTRON Dys
3R	13600041	3R_13600041_SNP [dm3] 3R_17774319_SNP [dm6]	C	T	3.020e^-4	0.856	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
X	14345811	X_14345811_SNP [dm3] X_14451778_SNP [dm6]	C	A	3.040e^-4	0.856	INTRON dpr8
2R	19455531	2R_19455531_SNP [dm3] 2R_23568008_SNP [dm6]	A	T	3.046e^-4	0.856	UPSTREAM apt INTRON apt
3R	13096462	3R_13096462_SNP [dm3] 3R_17270740_SNP [dm6]	T	C	3.053e^-4	0.856	INTRON CR44258
2L	18328682	2L_18328682_SNP [dm3] 2L_18328682_SNP [dm6]	C	G	3.066e^-4	0.856	INTRON Fas3
3L	22683223	3L_22683223_SNP [dm3] 3L_22690123_SNP [dm6]	A	G	3.071e^-4	0.856	INTERGENIC
2L	2791499	2L_2791499_SNP [dm3] 2L_2791499_SNP [dm6]	C	G	3.071e^-4	0.856	INTRON Syt1
X	19869903	X_19869903_DEL [dm3] X_19975870_DEL [dm6]	TTAGGAAGAAGTATCCAGAG...	T	3.083e^-4	0.856	INTERGENIC
3R	14455404	3R_14455404_SNP [dm3] 3R_18629682_SNP [dm6]	G	T	3.084e^-4	0.856	SYNONYMOUS_CODING CG14301 INTRON qin
3R	4363255	3R_4363255_SNP [dm3] 3R_8537533_SNP [dm6]	A	G	3.088e^-4	0.856	INTERGENIC
3L	10699625	3L_10699625_SNP [dm3] 3L_10706525_SNP [dm6]	C	A	3.089e^-4	0.856	INTERGENIC
2R	19460782	2R_19460782_SNP [dm3] 2R_23573259_SNP [dm6]	C	G	3.092e^-4	0.856	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	13610291	2L_13610291_SNP [dm3] 2L_13610291_SNP [dm6]	C	T	3.094e^-4	0.856	NON_SYNONYMOUS_CODING kuz DOWNSTREAM mir-2489
2L	4624624	2L_4624624_SNP [dm3] 2L_4624624_SNP [dm6]	G	A	3.096e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7484642	3L_7484642_SNP [dm3] 3L_7491542_SNP [dm6]	T	C	3.098e^-4	0.856	UPSTREAM Cyp316a1 INTERGENIC
2L	18617108	2L_18617108_SNP [dm3] 2L_18617108_SNP [dm6]	A	T	3.102e^-4	0.856	UPSTREAM MESR3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	2887446	2L_2887446_SNP [dm3] 2L_2887446_SNP [dm6]	A	T	3.102e^-4	0.856	UPSTREAM lilli INTRON lilli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
2L	4943539	2L_4943539_SNP [dm3] 2L_4943539_SNP [dm6]	G	A	3.107e^-4	0.856	SYNONYMOUS_CODING CG14044 DOWNSTREAM mRpL24
2L	7795037	2L_7795037_SNP [dm3] 2L_7795037_SNP [dm6]	T	C	3.107e^-4	0.856	UPSTREAM CR44825 INTRON LKR
3R	26177835	3R_26177835_SNP [dm3] 3R_30352113_SNP [dm6]	T	C	3.125e^-4	0.856	INTRON hdc
X	1976698	X_1976698_SNP [dm3] X_2082665_SNP [dm6]	G	T	3.129e^-4	0.856	INTRON Unc-76	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	19367828	2L_19367828_SNP [dm3] 2L_19367828_SNP [dm6]	T	G	3.134e^-4	0.856	INTERGENIC
X	7599606	X_7599606_SNP [dm3] X_7705573_SNP [dm6]	G	T	3.139e^-4	0.856	UPSTREAM CHES-1-like INTRON CHES-1-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	5744978	X_5744978_INS [dm3] X_5850945_INS [dm6]	C	CAACCAACC	3.139e^-4	0.856	INTERGENIC
3R	17119356	3R_17119356_SNP [dm3] 3R_21293634_SNP [dm6]	C	T	3.139e^-4	0.856	INTRON SIFaR
2L	21929390	2L_21929390_SNP [dm3] 2L_21929390_SNP [dm6]	G	C	3.141e^-4	0.856	UPSTREAM CR45334 INTERGENIC
3L	20901836	3L_20901836_SNP [dm3] 3L_20908736_SNP [dm6]	A	G	3.146e^-4	0.856	INTERGENIC
2L	473293	2L_473293_SNP [dm3] 2L_473293_SNP [dm6]	C	A	3.151e^-4	0.856	SYNONYMOUS_CODING MED15 INTRON CG4297	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	584010	X_584010_SNP [dm3] X_689977_SNP [dm6]	T	G	3.154e^-4	0.856	INTRON sdk	TF binding site BDTNP1_TFBS_da
2L	4294765	2L_4294765_SNP [dm3] 2L_4294765_SNP [dm6]	G	A	3.154e^-4	0.856	INTRON tutl	TF binding site mE1_TFBS_chinmo
3L	7726323	3L_7726323_SNP [dm3] 3L_7733223_SNP [dm6]	C	G	3.155e^-4	0.856	DOWNSTREAM Snmp2 INTRON CG32373
3R	11272369	3R_11272369_SNP [dm3] 3R_15446647_SNP [dm6]	C	A	3.162e^-4	0.856	INTRON AdamTS-A	TF binding site mE1_TFBS_cad
3L	21547852	3L_21547852_DEL [dm3] 3L_21554752_DEL [dm6]	TT	T	3.167e^-4	0.856	UTR_5_PRIME Wnk DOWNSTREAM CG7173	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	20300658	3R_20300658_SNP [dm3] 3R_24474936_SNP [dm6]	A	C	3.167e^-4	0.856	INTERGENIC
3R	25091548	3R_25091548_SNP [dm3] 3R_29265826_SNP [dm6]	T	A	3.173e^-4	0.856	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2356978	3L_2356978_SNP [dm3] 3L_2356978_SNP [dm6]	T	C	3.173e^-4	0.856	INTERGENIC
2R	19690426	2R_19690426_SNP [dm3] 2R_23802903_SNP [dm6]	C	A	3.183e^-4	0.856	UTR_3_PRIME CG30177
2L	2782662	2L_2782662_SNP [dm3] 2L_2782662_SNP [dm6]	A	T	3.184e^-4	0.856	UTR_3_PRIME Syt1
3L	10694223	3L_10694223_SNP [dm3] 3L_10701123_SNP [dm6]	C	A	3.210e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	16867286	3L_16867286_SNP [dm3] 3L_16874186_SNP [dm6]	C	T	3.226e^-4	0.856	INTRON Lmpt
2R	11726154	2R_11726154_SNP [dm3] 2R_15838649_SNP [dm6]	G	A	3.228e^-4	0.856	INTRON tun	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Trl
X	13501579	X_13501579_INS [dm3] X_13607546_INS [dm6]	A	ATGTA	3.229e^-4	0.856	INTRON CG11178	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2254909	X_2254909_DEL [dm3] X_2360876_DEL [dm6]	TTTT	T	3.236e^-4	0.856	INTRON ptr
2L	15003123	2L_15003123_SNP [dm3] 2L_15003123_SNP [dm6]	T	A	3.242e^-4	0.856	INTERGENIC
2R	9084761	2R_9084761_SNP [dm3] 2R_13197256_SNP [dm6]	A	T	3.255e^-4	0.856	INTRON Kdm4B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	12111309	2L_12111309_SNP [dm3] 2L_12111309_SNP [dm6]	T	C	3.274e^-4	0.856	SYNONYMOUS_CODING Phae2 DOWNSTREAM Phae1	TF binding site mE1_TFBS_cad
3R	21921454	3R_21921454_INS [dm3] 3R_26095732_INS [dm6]	A	ATTTGAAGGCAACCAAACGC...	3.284e^-4	0.856	INTRON dys	regulatory region REDfly_CRMs
X	13551185	X_13551185_SNP [dm3] X_13657152_SNP [dm6]	A	C	3.288e^-4	0.856	INTRON NFAT
2L	8290807	2L_8290807_SNP [dm3] 2L_8290807_SNP [dm6]	A	T	3.290e^-4	0.856	DOWNSTREAM tRNA:K5:29A INTRON Btk29A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3868382	X_3868382_SNP [dm3] X_3974349_SNP [dm6]	C	G	3.302e^-4	0.856	INTERGENIC
3R	21357243	3R_21357243_INS [dm3] 3R_25531521_INS [dm6]	T	TGACTTGATCTTCAAAT...	3.302e^-4	0.856	INTRON msi
2R	7157406	2R_7157406_SNP [dm3] 2R_11269901_SNP [dm6]	T	C	3.312e^-4	0.856	NON_SYNONYMOUS_CODING Cpr47Ef	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11867832	2R_11867832_SNP [dm3] 2R_15980327_SNP [dm6]	C	T	3.314e^-4	0.856	SYNONYMOUS_CODING Strn-Mlck
3R	12077474	3R_12077474_SNP [dm3] 3R_16251752_SNP [dm6]	T	A	3.323e^-4	0.856	INTRON tara	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13554440	2R_13554440_SNP [dm3] 2R_17666935_SNP [dm6]	G	A	3.323e^-4	0.856	SYNONYMOUS_CODING eIF3-S8	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3547801	3L_3547801_SNP [dm3] 3L_3547801_SNP [dm6]	T	C	3.328e^-4	0.856	INTRON Eip63E
2R	16597225	2R_16597225_SNP [dm3] 2R_20709720_SNP [dm6]	C	T	3.329e^-4	0.856	INTRON dpr
X	19908317	X_19908317_DEL [dm3] X_20014284_DEL [dm6]	ATTTAGTATTACCATA...	A	3.331e^-4	0.856	UPSTREAM Dop2R INTRON Dop2R
2L	11054434	2L_11054434_DEL [dm3] 2L_11054434_DEL [dm6]	AAGCAAA	A	3.332e^-4	0.856	INTRON Samuel	TF binding site BDTNP1_TFBS_dl
2L	1542729	2L_1542729_SNP [dm3] 2L_1542729_SNP [dm6]	C	T	3.332e^-4	0.856	INTERGENIC
3R	21900436	3R_21900436_SNP [dm3] 3R_26074714_SNP [dm6]	A	G	3.369e^-4	0.856	INTERGENIC
3R	21357231	3R_21357231_SNP [dm3] 3R_25531509_SNP [dm6]	G	A	3.378e^-4	0.856	INTRON msi
2L	11498749	2L_11498749_SNP [dm3] 2L_11498749_SNP [dm6]	C	A	3.382e^-4	0.856	INTRON CG6488	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	12745333	3R_12745333_SNP [dm3] 3R_16919611_SNP [dm6]	T	C	3.403e^-4	0.856	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	10808725	2L_10808725_SNP [dm3] 2L_10808725_SNP [dm6]	T	A	3.410e^-4	0.856	INTRON Nos
2L	9430498	2L_9430498_SNP [dm3] 2L_9430498_SNP [dm6]	T	A	3.413e^-4	0.856	UPSTREAM FucTB & 1 other INTRON FucTB
2L	1878402	2L_1878402_SNP [dm3] 2L_1878402_SNP [dm6]	A	T	3.428e^-4	0.856	INTRON CG31663
X	18463732	X_18463732_SNP [dm3] X_18569699_SNP [dm6]	A	G	3.435e^-4	0.856	INTRON Bx	TF binding site BDTNP1_TFBS_da
2L	1154723	2L_1154723_SNP [dm3] 2L_1154723_SNP [dm6]	C	T	3.443e^-4	0.856	NON_SYNONYMOUS_CODING capt INTRON capt	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20345607	2R_20345607_SNP [dm3] 2R_24458084_SNP [dm6]	A	T	3.444e^-4	0.856	INTRON CG13579
3L	391977	3L_391977_SNP [dm3] 3L_391977_SNP [dm6]	A	T	3.450e^-4	0.856	DOWNSTREAM CR45378 INTRON trh
X	14071199	X_14071199_SNP [dm3] X_14177166_SNP [dm6]	T	C	3.456e^-4	0.856	SYNONYMOUS_CODING CG11581	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	718514	3L_718514_SNP [dm3] 3L_718514_SNP [dm6]	A	G	3.457e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7046713	3L_7046713_SNP [dm3] 3L_7053613_SNP [dm6]	T	C	3.460e^-4	0.856	DOWNSTREAM Mp INTERGENIC
3R	10573746	3R_10573746_SNP [dm3] 3R_14748024_SNP [dm6]	A	G	3.464e^-4	0.856	UPSTREAM smp-30 INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2L	3425135	2L_3425135_SNP [dm3] 2L_3425135_SNP [dm6]	C	G	3.465e^-4	0.856	INTRON pgant2
2R	17168816	2R_17168816_SNP [dm3] 2R_21281311_SNP [dm6]	A	G	3.471e^-4	0.856	SYNONYMOUS_CODING CG34203 UPSTREAM MFS16 DOWNSTREAM Rgk3
3R	20300669	3R_20300669_SNP [dm3] 3R_24474947_SNP [dm6]	A	G	3.484e^-4	0.856	INTERGENIC
2R	19024797	2R_19024797_SNP [dm3] 2R_23137274_SNP [dm6]	C	T	3.489e^-4	0.856	INTERGENIC
X	584084	X_584084_SNP [dm3] X_690051_SNP [dm6]	G	T	3.494e^-4	0.856	INTRON sdk	TF binding site BDTNP1_TFBS_da
2L	9571394	2L_9571394_SNP [dm3] 2L_9571394_SNP [dm6]	G	A	3.502e^-4	0.856	UTR_5_PRIME CG3838 INTRON CG3838
3R	13279323	3R_13279323_DEL [dm3] 3R_17453601_DEL [dm6]	CCATCCCCTCCCATCCTTCT...	C	3.502e^-4	0.856	INTERGENIC
3L	3090995	3L_3090995_SNP [dm3] 3L_3090995_SNP [dm6]	C	T	3.503e^-4	0.856	UTR_3_PRIME Cht7 DOWNSTREAM CG11486 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	14205097	3R_14205097_SNP [dm3] 3R_18379375_SNP [dm6]	T	G	3.512e^-4	0.856	INTRON CG7675
3L	10894909	3L_10894909_SNP [dm3] 3L_10901809_SNP [dm6]	C	A	3.514e^-4	0.856	INTERGENIC
3R	24941139	3R_24941139_SNP [dm3] 3R_29115417_SNP [dm6]	A	C	3.526e^-4	0.856	SYNONYMOUS_CODING CG11876 UPSTREAM Atg14 DOWNSTREAM CG11876	TF binding site mE1_TFBS_chinmo
3R	10237387	3R_10237387_SNP [dm3] 3R_14411665_SNP [dm6]	C	T	3.526e^-4	0.856	INTRON cv-c	TF binding site mE1_TFBS_inv
2R	9103655	2R_9103655_SNP [dm3] 2R_13216150_SNP [dm6]	G	A	3.528e^-4	0.856	DOWNSTREAM CG4627 INTRON CG4630
3R	23441360	3R_23441360_SNP [dm3] 3R_27615638_SNP [dm6]	T	G	3.530e^-4	0.856	INTRON Tusp
3R	15999023	3R_15999023_SNP [dm3] 3R_20173301_SNP [dm6]	G	A	3.536e^-4	0.856	INTRON CG5023
2R	17952168	2R_17952168_SNP [dm3] 2R_22064663_SNP [dm6]	A	G	3.537e^-4	0.856	INTRON Snp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15119302	2L_15119302_SNP [dm3] 2L_15119302_SNP [dm6]	T	C	3.540e^-4	0.856	UPSTREAM CR43853 INTERGENIC
3R	15177223	3R_15177223_SNP [dm3] 3R_19351501_SNP [dm6]	C	A	3.540e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	17503877	X_17503877_SNP [dm3] X_17609844_SNP [dm6]	G	T	3.547e^-4	0.856	INTERGENIC
X	4094020	X_4094020_SNP [dm3] X_4199987_SNP [dm6]	T	C	3.556e^-4	0.856	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	18478835	3R_18478835_SNP [dm3] 3R_22653113_SNP [dm6]	G	T	3.566e^-4	0.856	INTRON CG45058	TF binding site mE1_TFBS_chinmo
2R	11730831	2R_11730831_SNP [dm3] 2R_15843326_SNP [dm6]	C	A	3.568e^-4	0.856	UTR_3_PRIME CG8249 DOWNSTREAM CG8249 INTRON tun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	15111180	2L_15111180_INS [dm3] 2L_15111180_INS [dm6]	T	TT	3.573e^-4	0.856	INTRON CG15269	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	14127608	3R_14127608_SNP [dm3] 3R_18301886_SNP [dm6]	C	A	3.577e^-4	0.856	UPSTREAM CG18600 DOWNSTREAM CG7126 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	24153972	3R_24153972_SNP [dm3] 3R_28328250_SNP [dm6]	A	C	3.577e^-4	0.856	UTR_5_PRIME larp INTRON larp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	1647129	3L_1647129_SNP [dm3] 3L_1647129_SNP [dm6]	A	G	3.580e^-4	0.856	NON_SYNONYMOUS_CODING CG17249 UPSTREAM Bro	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	5106969	2R_5106969_SNP [dm3] 2R_9219464_SNP [dm6]	G	A	3.603e^-4	0.856	INTERGENIC
3L	3547740	3L_3547740_SNP [dm3] 3L_3547740_SNP [dm6]	A	C	3.610e^-4	0.856	INTRON Eip63E
X	22330420	X_22330420_SNP [dm3] X_22928584_SNP [dm6]	G	A	3.616e^-4	0.856	INTERGENIC
2R	8129037	2R_8129037_SNP [dm3] 2R_12241532_SNP [dm6]	T	A	3.617e^-4	0.856	SPLICE_SITE_REGION CG43315 DOWNSTREAM CG13170 INTRON CG43315
2L	18914195	2L_18914195_SNP [dm3] 2L_18914195_SNP [dm6]	A	T	3.646e^-4	0.856	INTERGENIC
3L	9716322	3L_9716322_SNP [dm3] 3L_9723222_SNP [dm6]	A	T	3.650e^-4	0.856	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	5095938	2L_5095938_SNP [dm3] 2L_5095938_SNP [dm6]	A	G	3.650e^-4	0.856	UPSTREAM CG4230 DOWNSTREAM CG5828 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_kn
2L	11765714	2L_11765714_SNP [dm3] 2L_11765714_SNP [dm6]	A	G	3.658e^-4	0.856	INTERGENIC
2L	18487514	2L_18487514_SNP [dm3] 2L_18487514_SNP [dm6]	G	A	3.659e^-4	0.856	UTR_3_PRIME CG10176 DOWNSTREAM kon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7461927	2L_7461927_SNP [dm3] 2L_7461927_SNP [dm6]	A	T	3.667e^-4	0.856	SYNONYMOUS_CODING Gr28b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19460778	2R_19460778_INS [dm3] 2R_23573255_INS [dm6]	G	GTGG	3.673e^-4	0.856	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	10543723	X_10543723_SNP [dm3] X_10649690_SNP [dm6]	G	C	3.677e^-4	0.856	INTRON X11Lbeta
X	22209428	X_22209428_DEL [dm3] X_22807592_DEL [dm6]	CC	C	3.677e^-4	0.856	UPSTREAM CR45464 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9418330	2L_9418330_SNP [dm3] 2L_9418330_SNP [dm6]	A	T	3.685e^-4	0.856	INTRON Mco1
2L	9418332	2L_9418332_SNP [dm3] 2L_9418332_SNP [dm6]	C	G	3.685e^-4	0.856	INTRON Mco1
X	13473366	X_13473366_SNP [dm3] X_13579333_SNP [dm6]	G	C	3.689e^-4	0.856	INTRON Tango13
3R	15208326	3R_15208326_SNP [dm3] 3R_19382604_SNP [dm6]	C	T	3.700e^-4	0.856	INTRON Ino80
3R	15409543	3R_15409543_SNP [dm3] 3R_19583821_SNP [dm6]	G	A	3.702e^-4	0.856	INTRON Dys
3R	20300675	3R_20300675_SNP [dm3] 3R_24474953_SNP [dm6]	C	G	3.706e^-4	0.856	INTERGENIC
2L	4026573	2L_4026573_SNP [dm3] 2L_4026573_SNP [dm6]	T	C	3.710e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_sens
2L	9639556	2L_9639556_SNP [dm3] 2L_9639556_SNP [dm6]	T	A	3.711e^-4	0.856	INTRON Apoltp
3R	18478855	3R_18478855_SNP [dm3] 3R_22653133_SNP [dm6]	A	C	3.712e^-4	0.856	INTRON CG45058	TF binding site mE1_TFBS_chinmo
2R	10508777	2R_10508777_SNP [dm3] 2R_14621272_SNP [dm6]	A	T	3.719e^-4	0.856	UTR_5_PRIME CG12863 UPSTREAM Uhg5 & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_zfh1
2L	9285067	2L_9285067_DEL [dm3] 2L_9285067_DEL [dm6]	TAGTCCAACCACCTCCCC...	T	3.719e^-4	0.856	INTRON Ggamma30A
2R	13588231	2R_13588231_SNP [dm3] 2R_17700726_SNP [dm6]	C	T	3.722e^-4	0.856	UPSTREAM snoRNA:U76:54Eb & 4 others DOWNSTREAM snoRNA:Me28S-A3407a & 3 others INTRON Uhg1
3R	12077106	3R_12077106_SNP [dm3] 3R_16251384_SNP [dm6]	T	A	3.729e^-4	0.856	INTRON tara	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14090925	3R_14090925_SNP [dm3] 3R_18265203_SNP [dm6]	A	G	3.733e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17911579	2R_17911579_SNP [dm3] 2R_22024074_SNP [dm6]	T	C	3.734e^-4	0.856	INTRON CG34370
2R	16427763	2R_16427763_SNP [dm3] 2R_20540258_SNP [dm6]	G	A	3.742e^-4	0.856	SPLICE_SITE_REGION CG13428 UPSTREAM CG13427 DOWNSTREAM CR44652 INTRON CG13428	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
X	7589667	X_7589667_SNP [dm3] X_7695634_SNP [dm6]	C	T	3.742e^-4	0.856	UPSTREAM CHES-1-like INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3L	722590	3L_722590_SNP [dm3] 3L_722590_SNP [dm6]	A	T	3.742e^-4	0.856	INTERGENIC
X	6673200	X_6673200_SNP [dm3] X_6779167_SNP [dm6]	G	A	3.743e^-4	0.856	INTRON shf	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24427748	3R_24427748_SNP [dm3] 3R_28602026_SNP [dm6]	A	T	3.748e^-4	0.856	UPSTREAM snoRNA:Psi28S-3405c & 2 others DOWNSTREAM snoRNA:Psi28S-3405a & 2 others INTRON Hrb98DE
2R	10043021	2R_10043021_SNP [dm3] 2R_14155516_SNP [dm6]	C	T	3.750e^-4	0.856	SYNONYMOUS_CODING pea	TF binding site mE1_TFBS_sens
X	8814833	X_8814833_SNP [dm3] X_8920800_SNP [dm6]	C	T	3.755e^-4	0.856	UPSTREAM CR44111 INTRON rdgA
3L	3563372	3L_3563372_SNP [dm3] 3L_3563372_SNP [dm6]	C	T	3.758e^-4	0.856	INTRON Eip63E
3L	20901759	3L_20901759_SNP [dm3] 3L_20908659_SNP [dm6]	T	C	3.760e^-4	0.856	INTERGENIC
2L	9508648	2L_9508648_SNP [dm3] 2L_9508648_SNP [dm6]	G	A	3.760e^-4	0.856	INTRON CG33298	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	21114882	X_21114882_DEL [dm3] X_21243855_DEL [dm6]	ATGTA	A	3.770e^-4	0.856	INTRON CG32521
2R	7406564	2R_7406564_SNP [dm3] 2R_11519059_SNP [dm6]	T	G	3.778e^-4	0.856	INTERGENIC
3R	15394423	3R_15394423_INS [dm3] 3R_19568701_INS [dm6]	A	AA	3.785e^-4	0.856	UPSTREAM Dys INTRON Dys	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	21979570	2L_21979570_SNP [dm3] 2L_21979570_SNP [dm6]	T	A	3.787e^-4	0.856	INTERGENIC
2L	13902151	2L_13902151_SNP [dm3] 2L_13902151_SNP [dm6]	A	T	3.794e^-4	0.856	SYNONYMOUS_CODING Smg5
2L	4007867	2L_4007867_SNP [dm3] 2L_4007867_SNP [dm6]	T	C	3.799e^-4	0.856	SYNONYMOUS_CODING CG43773 UPSTREAM CG43774
3L	19562268	3L_19562268_SNP [dm3] 3L_19569168_SNP [dm6]	A	G	3.803e^-4	0.856	INTRON Shal
2L	18652304	2L_18652304_SNP [dm3] 2L_18652304_SNP [dm6]	A	G	3.803e^-4	0.856	SYNONYMOUS_CODING Cyp310a1 INTRON MESR3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21131332	X_21131332_SNP [dm3] X_21260305_SNP [dm6]	T	A	3.806e^-4	0.856	INTRON CG32521
2R	10503269	2R_10503269_SNP [dm3] 2R_14615764_SNP [dm6]	A	G	3.808e^-4	0.856	NON_SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10693458	3L_10693458_SNP [dm3] 3L_10700358_SNP [dm6]	A	C	3.818e^-4	0.856	INTERGENIC
3R	13928374	3R_13928374_SNP [dm3] 3R_18102652_SNP [dm6]	G	A	3.820e^-4	0.856	INTRON sr
3R	4268919	3R_4268919_SNP [dm3] 3R_8443197_SNP [dm6]	A	G	3.824e^-4	0.856	INTRON CG45263	TF binding site mE1_TFBS_cad
X	18369227	X_18369227_SNP [dm3] X_18475194_SNP [dm6]	G	A	3.826e^-4	0.856	INTRON CG32547
2R	18620044	2R_18620044_SNP [dm3] 2R_22732539_SNP [dm6]	A	G	3.830e^-4	0.856	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11544595	3L_11544595_SNP [dm3] 3L_11551495_SNP [dm6]	C	A	3.830e^-4	0.856	INTRON Mob2	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	10699614	3L_10699614_SNP [dm3] 3L_10706514_SNP [dm6]	A	T	3.837e^-4	0.856	INTERGENIC
3R	26963840	3R_26963840_INS [dm3] 3R_31138118_INS [dm6]	A	AA	3.840e^-4	0.856	INTRON Gycbeta100B
2L	18384508	2L_18384508_SNP [dm3] 2L_18384508_SNP [dm6]	G	A	3.845e^-4	0.856	SYNONYMOUS_CODING Fas3	TF binding site mE1_TFBS_cad
2L	10532454	2L_10532454_SNP [dm3] 2L_10532454_SNP [dm6]	C	T	3.845e^-4	0.856	SYNONYMOUS_CODING CG18301 DOWNSTREAM Lip4
X	6103021	X_6103021_SNP [dm3] X_6208988_SNP [dm6]	T	C	3.846e^-4	0.856	INTERGENIC
2L	4328876	2L_4328876_SNP [dm3] 2L_4328876_SNP [dm6]	A	T	3.850e^-4	0.856	INTRON CG16857	TF binding site mE1_TFBS_chinmo
3R	23513340	3R_23513340_SNP [dm3] 3R_27687618_SNP [dm6]	C	T	3.850e^-4	0.856	NON_SYNONYMOUS_CODING CG31055 INTRON CG12880	TF binding site mE1_TFBS_chinmo
3L	3561314	3L_3561314_SNP [dm3] 3L_3561314_SNP [dm6]	A	T	3.852e^-4	0.856	INTRON Eip63E	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	21321155	3R_21321155_SNP [dm3] 3R_25495433_SNP [dm6]	A	T	3.855e^-4	0.856	UPSTREAM CG33494 DOWNSTREAM CR44948 INTERGENIC	transposable element FlyBase
3R	13666303	3R_13666303_SNP [dm3] 3R_17840581_SNP [dm6]	A	T	3.855e^-4	0.856	INTRON tinc
2L	21999660	2L_21999660_SNP [dm3] 2L_21999660_SNP [dm6]	C	A	3.860e^-4	0.856	DOWNSTREAM CR44916 INTERGENIC
X	305032	X_305032_SNP [dm3] X_410999_SNP [dm6]	G	T	3.864e^-4	0.856	DOWNSTREAM l_1_sc INTRON CG32816
2R	11540775	2R_11540775_SNP [dm3] 2R_15653270_SNP [dm6]	G	A	3.870e^-4	0.856	INTRON CG42524
2L	12116960	2L_12116960_SNP [dm3] 2L_12116960_SNP [dm6]	C	T	3.875e^-4	0.856	INTRON CG17211
3R	26963842	3R_26963842_SNP [dm3] 3R_31138120_SNP [dm6]	G	A	3.877e^-4	0.856	INTRON Gycbeta100B
X	14072787	X_14072787_SNP [dm3] X_14178754_SNP [dm6]	G	T	3.878e^-4	0.856	DOWNSTREAM CG11581 INTERGENIC
3L	10611609	3L_10611609_SNP [dm3] 3L_10618509_SNP [dm6]	A	T	3.884e^-4	0.856	INTERGENIC
X	13332053	X_13332053_SNP [dm3] X_13438020_SNP [dm6]	C	A	3.886e^-4	0.856	INTERGENIC
3L	21537802	3L_21537802_INS [dm3] 3L_21544702_INS [dm6]	G	GG	3.890e^-4	0.856	INTRON Wnk
2R	12545373	2R_12545373_SNP [dm3] 2R_16657868_SNP [dm6]	A	T	3.893e^-4	0.856	INTRON Picot
X	18369714	X_18369714_SNP [dm3] X_18475681_SNP [dm6]	C	A	3.893e^-4	0.856	INTRON CG32547
2L	15633012	2L_15633012_DEL [dm3] 2L_15633012_DEL [dm6]	AAA	A	3.898e^-4	0.856	UTR_3_PRIME CG18480 DOWNSTREAM CG18480
2R	13711448	2R_13711448_INS [dm3] 2R_17823943_INS [dm6]	C	CAAC	3.901e^-4	0.856	INTRON grh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
2L	3276511	2L_3276511_SNP [dm3] 2L_3276511_SNP [dm6]	A	T	3.903e^-4	0.856	INTRON CG3332	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14788761	X_14788761_INS [dm3] X_14894728_INS [dm6]	C	TT	3.914e^-4	0.856	INTRON Flo2 & 1 other
3L	9716472	3L_9716472_SNP [dm3] 3L_9723372_SNP [dm6]	T	G	3.916e^-4	0.856	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	2577652	X_2577652_SNP [dm3] X_2683619_SNP [dm6]	T	A	3.919e^-4	0.856	UPSTREAM CG2652 EXON CR44470
3R	7369247	3R_7369247_SNP [dm3] 3R_11543525_SNP [dm6]	T	A	3.927e^-4	0.856	UPSTREAM dpr4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	9716420	3L_9716420_INS [dm3] 3L_9723320_INS [dm6]	G	TTA	3.934e^-4	0.856	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	5290172	X_5290172_SNP [dm3] X_5396139_SNP [dm6]	G	A	3.943e^-4	0.856	INTRON SK
2R	19452993	2R_19452993_SNP [dm3] 2R_23565470_SNP [dm6]	T	C	3.945e^-4	0.856	DOWNSTREAM CG30184 INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5123063	3L_5123063_SNP [dm3] 3L_5129963_SNP [dm6]	G	C	3.947e^-4	0.856	NON_SYNONYMOUS_CODING CG4597
3R	5709131	3R_5709131_SNP [dm3] 3R_9883409_SNP [dm6]	C	G	3.948e^-4	0.856	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21601955	3R_21601955_SNP [dm3] 3R_25776233_SNP [dm6]	G	A	3.949e^-4	0.856	START_GAINED CG17196 UTR_5_PRIME CG17196 UPSTREAM CG17197 & 1 other DOWNSTREAM CG17195
2L	21916384	2L_21916384_SNP [dm3] 2L_21916384_SNP [dm6]	C	G	3.953e^-4	0.856	UTR_5_PRIME CG11634
2R	10516636	2R_10516636_SNP [dm3] 2R_14629131_SNP [dm6]	T	C	3.955e^-4	0.856	UPSTREAM CG10131 INTERGENIC
2R	11919362	2R_11919362_SNP [dm3] 2R_16031857_SNP [dm6]	T	C	3.956e^-4	0.856	UPSTREAM SP2353 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	7501184	2L_7501184_SNP [dm3] 2L_7501184_SNP [dm6]	T	C	3.959e^-4	0.856	SYNONYMOUS_CODING RapGAP1	TF binding site mE1_TFBS_cad
X	2577498	X_2577498_SNP [dm3] X_2683465_SNP [dm6]	C	A	3.964e^-4	0.856	UPSTREAM CG2652 EXON CR44470
3R	18793430	3R_18793430_SNP [dm3] 3R_22967708_SNP [dm6]	A	C	3.985e^-4	0.856	UTR_3_PRIME Tpl94D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	6381844	X_6381844_SNP [dm3] X_6487811_SNP [dm6]	C	A	3.995e^-4	0.856	INTRON CG42340
X	19908259	X_19908259_SNP [dm3] X_20014226_SNP [dm6]	G	A	3.997e^-4	0.856	UPSTREAM Dop2R INTRON Dop2R
2L	21851919	2L_21851919_INS [dm3] 2L_21851919_INS [dm6]	T	TTCT	3.998e^-4	0.856	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	8106716	2L_8106716_SNP [dm3] 2L_8106716_SNP [dm6]	G	A	4.000e^-4	0.856	INTRON Bsg
3L	1124368	3L_1124368_SNP [dm3] 3L_1124368_SNP [dm6]	A	T	4.007e^-4	0.856	INTERGENIC	regulatory region REDfly_CRMs
3L	355515	3L_355515_SNP [dm3] 3L_355515_SNP [dm6]	C	T	4.008e^-4	0.856	SYNONYMOUS_CODING Ptpmeg UPSTREAM CG1231
3R	11857220	3R_11857220_SNP [dm3] 3R_16031498_SNP [dm6]	C	T	4.012e^-4	0.856	INTRON pnr
3R	19736664	3R_19736664_SNP [dm3] 3R_23910942_SNP [dm6]	C	T	4.019e^-4	0.856	INTRON sba
2R	19451628	2R_19451628_SNP [dm3] 2R_23564105_SNP [dm6]	T	A	4.021e^-4	0.856	SYNONYMOUS_CODING CG30184 UPSTREAM apt DOWNSTREAM Pi3K59F	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	19871464	X_19871464_SNP [dm3] X_19977431_SNP [dm6]	A	G	4.036e^-4	0.856	INTERGENIC
3L	2121850	3L_2121850_SNP [dm3] 3L_2121850_SNP [dm6]	G	C	4.058e^-4	0.856	DOWNSTREAM zormin INTRON zormin	TF binding site BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2R	19438651	2R_19438651_SNP [dm3] 2R_23551128_SNP [dm6]	A	C	4.073e^-4	0.856	UTR_5_PRIME pita UPSTREAM Dcp-1 INTRON pita	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2344403	3L_2344403_SNP [dm3] 3L_2344403_SNP [dm6]	A	T	4.088e^-4	0.856	UTR_3_PRIME MsR1
3L	7470026	3L_7470026_SNP [dm3] 3L_7476926_SNP [dm6]	T	A	4.094e^-4	0.856	DOWNSTREAM CG43292 INTERGENIC
X	21233537	X_21233537_SNP [dm3] X_21362510_SNP [dm6]	T	A	4.094e^-4	0.856	UPSTREAM waw & 1 other DOWNSTREAM Sep1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	21845761	3R_21845761_INS [dm3] 3R_26020039_INS [dm6]	A	AA	4.097e^-4	0.856	UPSTREAM CR43643 DOWNSTREAM CR43644 INTERGENIC
X	7052619	X_7052619_SNP [dm3] X_7158586_SNP [dm6]	C	T	4.098e^-4	0.856	INTRON CG9650	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	16065038	X_16065038_DEL [dm3] X_16171005_DEL [dm6]	GACACACACGC...	G	4.100e^-4	0.856	INTERGENIC
3R	15999884	3R_15999884_SNP [dm3] 3R_20174162_SNP [dm6]	C	T	4.100e^-4	0.856	SYNONYMOUS_CODING CG5023	TF binding site mE1_TFBS_chinmo
2L	15181498	2L_15181498_SNP [dm3] 2L_15181498_SNP [dm6]	T	A	4.100e^-4	0.856	INTRON CG4168
X	20927806	X_20927806_SNP [dm3] X_21056779_SNP [dm6]	C	G	4.115e^-4	0.856	INTRON bves	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2L	9623550	2L_9623550_SNP [dm3] 2L_9623550_SNP [dm6]	T	C	4.140e^-4	0.856	DOWNSTREAM GlcAT-S & 1 other INTERGENIC
2R	11474500	2R_11474500_SNP [dm3] 2R_15586995_SNP [dm6]	A	G	4.152e^-4	0.856	INTERGENIC
3L	20906902	3L_20906902_DEL [dm3] 3L_20913802_DEL [dm6]	TGGAACAAACGAAACTCCCA...	T	4.172e^-4	0.856	UPSTREAM CR43930 DOWNSTREAM CR45733 INTERGENIC
2L	2877457	2L_2877457_SNP [dm3] 2L_2877457_SNP [dm6]	C	G	4.174e^-4	0.856	UPSTREAM CG31950 DOWNSTREAM CG8814 INTRON Prx6005	TF binding site BDTNP1_TFBS_dl
X	16801467	X_16801467_SNP [dm3] X_16907434_SNP [dm6]	T	A	4.187e^-4	0.856	INTRON CR44754
3R	19073135	3R_19073135_SNP [dm3] 3R_23247413_SNP [dm6]	T	C	4.188e^-4	0.856	INTRON CG4467
2L	16717655	2L_16717655_SNP [dm3] 2L_16717655_SNP [dm6]	T	C	4.189e^-4	0.856	INTRON Cyt-c-d	TF binding site BDTNP1_TFBS_dl
2L	18617087	2L_18617087_SNP [dm3] 2L_18617087_SNP [dm6]	G	T	4.193e^-4	0.856	UPSTREAM CG15161 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	10432020	3R_10432020_SNP [dm3] 3R_14606298_SNP [dm6]	C	T	4.196e^-4	0.856	SYNONYMOUS_CODING stumps
3L	14310265	3L_14310265_SNP [dm3] 3L_14317165_SNP [dm6]	C	T	4.197e^-4	0.856	SYNONYMOUS_CODING fz
2L	19092998	2L_19092998_SNP [dm3] 2L_19092998_SNP [dm6]	G	A	4.203e^-4	0.856	INTRON Lim3
2L	10294129	2L_10294129_SNP [dm3] 2L_10294129_SNP [dm6]	A	T	4.207e^-4	0.856	INTRON Hand	regulatory region REDfly_CRMs
2L	8490624	2L_8490624_SNP [dm3] 2L_8490624_SNP [dm6]	A	T	4.210e^-4	0.856	UPSTREAM CG43400 DOWNSTREAM CG13088 INTERGENIC
X	2141928	X_2141928_SNP [dm3] X_2247895_SNP [dm6]	T	C	4.212e^-4	0.856	SYNONYMOUS_CODING crn DOWNSTREAM Or2a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	391971	3L_391971_SNP [dm3] 3L_391971_SNP [dm6]	C	A	4.220e^-4	0.856	DOWNSTREAM CR45378 INTRON trh
3L	2629031	3L_2629031_SNP [dm3] 3L_2629031_SNP [dm6]	T	C	4.229e^-4	0.856	DOWNSTREAM CR45660 INTRON Pxn
X	4986436	X_4986436_SNP [dm3] X_5092403_SNP [dm6]	T	A	4.243e^-4	0.856	INTRON rg & 1 other
2R	20191431	2R_20191431_SNP [dm3] 2R_24303908_SNP [dm6]	A	G	4.246e^-4	0.856	INTERGENIC	regulatory region REDfly_CRMs
2L	15090891	2L_15090891_SNP [dm3] 2L_15090891_SNP [dm6]	G	C	4.253e^-4	0.856	SPLICE_SITE_REGION CG15270 INTRON CG15270
2L	18328372	2L_18328372_SNP [dm3] 2L_18328372_SNP [dm6]	C	G	4.281e^-4	0.856	INTRON Fas3
3L	13977564	3L_13977564_SNP [dm3] 3L_13984464_SNP [dm6]	C	T	4.283e^-4	0.856	INTRON CG17364
2R	13781818	2R_13781818_SNP [dm3] 2R_17894313_SNP [dm6]	A	G	4.284e^-4	0.856	SYNONYMOUS_CODING CG14492 UPSTREAM CG14491 INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	13501683	X_13501683_SNP [dm3] X_13607650_SNP [dm6]	G	A	4.290e^-4	0.856	INTRON CG11178	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19292516	2L_19292516_SNP [dm3] 2L_19292516_SNP [dm6]	C	T	4.294e^-4	0.856	INTERGENIC
2L	2645902	2L_2645902_SNP [dm3] 2L_2645902_SNP [dm6]	T	C	4.301e^-4	0.856	UPSTREAM CR43852 DOWNSTREAM CG9962 INTERGENIC
3R	7365388	3R_7365388_SNP [dm3] 3R_11539666_SNP [dm6]	A	G	4.307e^-4	0.856	INTRON dpr4
2R	17120405	2R_17120405_SNP [dm3] 2R_21232900_SNP [dm6]	A	T	4.311e^-4	0.856	INTRON ASPP
X	18406897	X_18406897_SNP [dm3] X_18512864_SNP [dm6]	T	C	4.311e^-4	0.856	UTR_3_PRIME CG6470 UPSTREAM Ggt-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14042362	X_14042362_SNP [dm3] X_14148329_SNP [dm6]	A	G	4.313e^-4	0.856	INTERGENIC
3R	27129280	3R_27129280_SNP [dm3] 3R_31303558_SNP [dm6]	A	G	4.323e^-4	0.856	SYNONYMOUS_CODING CG11340	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	964157	3R_964157_SNP [dm3] 3R_5138435_SNP [dm6]	G	T	4.333e^-4	0.856	UTR_5_PRIME CG12589 UPSTREAM CG12589	TF binding site mE1_TFBS_cad
3R	26042450	3R_26042450_SNP [dm3] 3R_30216728_SNP [dm6]	T	A	4.339e^-4	0.856	INTRON CecC
3L	8582894	3L_8582894_SNP [dm3] 3L_8589794_SNP [dm6]	G	C	4.340e^-4	0.856	UPSTREAM CG43078 INTRON CG43078
X	21116859	X_21116859_SNP [dm3] X_21245832_SNP [dm6]	G	A	4.344e^-4	0.856	INTRON CG32521
2L	18617071	2L_18617071_DEL [dm3] 2L_18617071_DEL [dm6]	TG	T	4.345e^-4	0.856	UPSTREAM CG15161 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	18617075	2L_18617075_DEL [dm3] 2L_18617075_DEL [dm6]	GTCAGTACCC	G	4.345e^-4	0.856	UPSTREAM CG15161 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13902091	2L_13902091_SNP [dm3] 2L_13902091_SNP [dm6]	T	C	4.355e^-4	0.856	SYNONYMOUS_CODING Smg5
X	19018427	X_19018427_SNP [dm3] X_19124394_SNP [dm6]	A	G	4.361e^-4	0.856	UPSTREAM CG15882 DOWNSTREAM tgy INTERGENIC
3R	23519319	3R_23519319_SNP [dm3] 3R_27693597_SNP [dm6]	G	A	4.361e^-4	0.856	UPSTREAM CG43319 DOWNSTREAM CG12880 INTERGENIC
X	20861186	X_20861186_SNP [dm3] X_20990159_SNP [dm6]	T	G	4.369e^-4	0.856	INTERGENIC
3R	18093541	3R_18093541_SNP [dm3] 3R_22267819_SNP [dm6]	A	G	4.374e^-4	0.856	INTRON SKIP
X	19014571	X_19014571_SNP [dm3] X_19120538_SNP [dm6]	T	G	4.378e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	19018280	X_19018280_SNP [dm3] X_19124247_SNP [dm6]	A	T	4.387e^-4	0.856	NON_SYNONYMOUS_CODING CG15882 DOWNSTREAM tgy
3L	7700435	3L_7700435_DEL [dm3] 3L_7707335_DEL [dm6]	AC	A	4.390e^-4	0.856	INTRON CG32373 & 1 other	TF binding site mE1_TFBS_chinmo
3R	10969591	3R_10969591_SNP [dm3] 3R_15143869_SNP [dm6]	A	G	4.393e^-4	0.856	INTRON GlyS
3R	20606797	3R_20606797_SNP [dm3] 3R_24781075_SNP [dm6]	T	C	4.397e^-4	0.856	INTRON CG42331	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	9716375	3L_9716375_SNP [dm3] 3L_9723275_SNP [dm6]	G	T	4.397e^-4	0.856	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15126839	2L_15126839_SNP [dm3] 2L_15126839_SNP [dm6]	A	T	4.405e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11259752	3R_11259752_INS [dm3] 3R_15434030_INS [dm6]	A	AACTA	4.409e^-4	0.856	INTRON CG6118
3L	9177943	3L_9177943_SNP [dm3] 3L_9184843_SNP [dm6]	A	C	4.418e^-4	0.856	INTERGENIC
2L	10889893	2L_10889893_SNP [dm3] 2L_10889893_SNP [dm6]	T	A	4.421e^-4	0.856	UPSTREAM CG14071 INTERGENIC
2L	11768952	2L_11768952_SNP [dm3] 2L_11768952_SNP [dm6]	C	T	4.425e^-4	0.856	INTERGENIC
3L	4841144	3L_4841144_SNP [dm3] 3L_4841144_SNP [dm6]	C	T	4.429e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	21112765	X_21112765_SNP [dm3] X_21241738_SNP [dm6]	C	T	4.429e^-4	0.856	INTRON CG32521
3L	11034764	3L_11034764_SNP [dm3] 3L_11041664_SNP [dm6]	A	C	4.430e^-4	0.856	INTRON CG43693	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3R	14468434	3R_14468434_SNP [dm3] 3R_18642712_SNP [dm6]	C	T	4.431e^-4	0.856	INTRON qin
3L	10611621	3L_10611621_SNP [dm3] 3L_10618521_SNP [dm6]	A	T	4.442e^-4	0.856	INTERGENIC
3R	24727035	3R_24727035_SNP [dm3] 3R_28901313_SNP [dm6]	C	T	4.448e^-4	0.856	INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8137696	2R_8137696_SNP [dm3] 2R_12250191_SNP [dm6]	A	T	4.457e^-4	0.856	INTERGENIC
2L	909370	2L_909370_SNP [dm3] 2L_909370_SNP [dm6]	G	A	4.458e^-4	0.856	INTERGENIC
3R	3948645	3R_3948645_SNP [dm3] 3R_8122923_SNP [dm6]	C	T	4.466e^-4	0.856	NON_SYNONYMOUS_CODING CG7878 DOWNSTREAM puc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26804059	3R_26804059_INS [dm3] 3R_30978337_INS [dm6]	A	AATA	4.470e^-4	0.856	INTRON 5-HT7
X	6381838	X_6381838_SNP [dm3] X_6487805_SNP [dm6]	C	A	4.471e^-4	0.856	INTRON CG42340
2R	3254543	2R_3254543_SNP [dm3] 2R_7367038_SNP [dm6]	G	T	4.474e^-4	0.856	INTRON Dscam1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1075849	X_1075849_INS [dm3] X_1181816_INS [dm6]	C	CC	4.486e^-4	0.856	UPSTREAM CG14627 DOWNSTREAM CG11379 INTRON CG14627	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	17095204	2R_17095204_SNP [dm3] 2R_21207699_SNP [dm6]	T	A	4.488e^-4	0.856	INTRON CG44245 & 1 other
2L	9533859	2L_9533859_SNP [dm3] 2L_9533859_SNP [dm6]	G	A	4.489e^-4	0.856	UPSTREAM Oatp30B INTRON Oatp30B	TF binding site mE1_TFBS_chinmo
X	19018938	X_19018938_SNP [dm3] X_19124905_SNP [dm6]	A	G	4.494e^-4	0.856	UPSTREAM CG15882 DOWNSTREAM tgy INTERGENIC
2L	3737714	2L_3737714_SNP [dm3] 2L_3737714_SNP [dm6]	G	C	4.497e^-4	0.856	INTRON CG10019
X	17711858	X_17711858_SNP [dm3] X_17817825_SNP [dm6]	G	A	4.497e^-4	0.856	INTERGENIC
2L	11606235	2L_11606235_SNP [dm3] 2L_11606235_SNP [dm6]	G	C	4.498e^-4	0.856	INTRON kek2
X	19018444	X_19018444_SNP [dm3] X_19124411_SNP [dm6]	G	A	4.504e^-4	0.856	UPSTREAM CG15882 DOWNSTREAM tgy INTERGENIC
3R	4267500	3R_4267500_SNP [dm3] 3R_8441778_SNP [dm6]	C	T	4.509e^-4	0.856	INTRON CG45263
2L	14954682	2L_14954682_SNP [dm3] 2L_14954682_SNP [dm6]	A	G	4.509e^-4	0.856	INTRON CG42313
3L	21483362	3L_21483362_SNP [dm3] 3L_21490262_SNP [dm6]	C	T	4.514e^-4	0.856	INTRON Neu2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3792810	2L_3792810_SNP [dm3] 2L_3792810_SNP [dm6]	T	G	4.519e^-4	0.856	INTRON CG3921
2L	10134845	2L_10134845_SNP [dm3] 2L_10134845_SNP [dm6]	T	C	4.524e^-4	0.856	INTRON CG44153
X	20215420	X_20215420_SNP [dm3] X_20344393_SNP [dm6]	A	G	4.539e^-4	0.856	INTERGENIC
2L	11031584	2L_11031584_SNP [dm3] 2L_11031584_SNP [dm6]	G	C	4.541e^-4	0.856	INTRON Samuel
X	4093930	X_4093930_SNP [dm3] X_4199897_SNP [dm6]	T	C	4.541e^-4	0.856	INTRON Fas2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	7901008	2R_7901008_SNP [dm3] 2R_12013503_SNP [dm6]	G	T	4.546e^-4	0.856	INTRON otk	TF binding site mE1_TFBS_Kr
3L	4787941	3L_4787941_SNP [dm3] 3L_4787941_SNP [dm6]	C	G	4.551e^-4	0.856	INTRON RhoGEF64C
2R	11755421	2R_11755421_SNP [dm3] 2R_15867916_SNP [dm6]	C	A	4.565e^-4	0.856	NON_SYNONYMOUS_CODING Rif1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19028185	2L_19028185_SNP [dm3] 2L_19028185_SNP [dm6]	T	C	4.566e^-4	0.856	INTRON Side
3L	8532578	3L_8532578_SNP [dm3] 3L_8539478_SNP [dm6]	A	C	4.567e^-4	0.856	INTERGENIC
2L	12182660	2L_12182660_SNP [dm3] 2L_12182660_SNP [dm6]	T	C	4.568e^-4	0.856	INTRON aret
3R	4819377	3R_4819377_SNP [dm3] 3R_8993655_SNP [dm6]	C	T	4.571e^-4	0.856	UPSTREAM E_var_3-9 INTRON CG11975	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	8413427	3R_8413427_SNP [dm3] 3R_12587705_SNP [dm6]	C	A	4.579e^-4	0.856	INTRON Octbeta2R
2R	9407769	2R_9407769_SNP [dm3] 2R_13520264_SNP [dm6]	C	T	4.580e^-4	0.856	INTRON Vmat	TF binding site mE1_TFBS_cad
3R	18716662	3R_18716662_SNP [dm3] 3R_22890940_SNP [dm6]	G	C	4.589e^-4	0.856	INTERGENIC
3R	25966384	3R_25966384_DEL [dm3] 3R_30140662_DEL [dm6]	ATTGTAGTCATACTC...	A	4.592e^-4	0.856	INTRON AdoR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13600672	3R_13600672_SNP [dm3] 3R_17774950_SNP [dm6]	C	T	4.598e^-4	0.856	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8124229	X_8124229_INS [dm3] X_8230196_INS [dm6]	A	AA	4.602e^-4	0.856	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_sens
X	19871890	X_19871890_SNP [dm3] X_19977857_SNP [dm6]	C	T	4.603e^-4	0.856	INTERGENIC
3L	9716422	3L_9716422_SNP [dm3] 3L_9723322_SNP [dm6]	C	T	4.603e^-4	0.856	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10230389	3L_10230389_SNP [dm3] 3L_10237289_SNP [dm6]	C	T	4.608e^-4	0.856	DOWNSTREAM CR44542 INTERGENIC
3R	14338236	3R_14338236_DEL [dm3] 3R_18512514_DEL [dm6]	TA	T	4.612e^-4	0.856	INTRON fru
X	16810030	X_16810030_SNP [dm3] X_16915997_SNP [dm6]	G	A	4.626e^-4	0.856	INTRON CG4928
3R	26178690	3R_26178690_INS [dm3] 3R_30352968_INS [dm6]	C	CAC	4.633e^-4	0.856	INTRON hdc
2R	7809394	2R_7809394_INS [dm3] 2R_11921889_INS [dm6]	C	CGAC	4.634e^-4	0.856	INTERGENIC
2R	19170504	2R_19170504_SNP [dm3] 2R_23282981_SNP [dm6]	T	A	4.634e^-4	0.856	INTRON CG3124
3L	10604723	3L_10604723_SNP [dm3] 3L_10611623_SNP [dm6]	C	A	4.641e^-4	0.856	INTERGENIC
3L	5177373	3L_5177373_SNP [dm3] 3L_5184273_SNP [dm6]	T	G	4.647e^-4	0.856	UTR_5_PRIME shep INTRON shep	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	621863	2L_621863_SNP [dm3] 2L_621863_SNP [dm6]	C	T	4.647e^-4	0.856	UPSTREAM lectin-21Cb INTERGENIC
2L	12376192	2L_12376192_SNP [dm3] 2L_12376192_SNP [dm6]	A	G	4.648e^-4	0.856	INTRON bru-2
3L	2557762	3L_2557762_SNP [dm3] 3L_2557762_SNP [dm6]	T	C	4.648e^-4	0.856	INTRON msn
3L	10694245	3L_10694245_SNP [dm3] 3L_10701145_SNP [dm6]	G	A	4.661e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14954730	2L_14954730_SNP [dm3] 2L_14954730_SNP [dm6]	T	A	4.662e^-4	0.856	INTRON CG42313
2L	8490570	2L_8490570_SNP [dm3] 2L_8490570_SNP [dm6]	G	A	4.665e^-4	0.856	UPSTREAM CG43400 DOWNSTREAM CG13088 INTERGENIC
3R	12745708	3R_12745708_SNP [dm3] 3R_16919986_SNP [dm6]	G	A	4.676e^-4	0.856	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	20345617	2R_20345617_SNP [dm3] 2R_24458094_SNP [dm6]	G	T	4.677e^-4	0.856	INTRON CG13579
3L	1056718	3L_1056718_SNP [dm3] 3L_1056718_SNP [dm6]	T	C	4.678e^-4	0.856	INTRON bab1
2L	19360446	2L_19360446_SNP [dm3] 2L_19360446_SNP [dm6]	C	G	4.680e^-4	0.856	INTRON dnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	21932402	2L_21932402_SNP [dm3] 2L_21932402_SNP [dm6]	T	C	4.685e^-4	0.856	DOWNSTREAM CR45334 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	13318052	3L_13318052_SNP [dm3] 3L_13324952_SNP [dm6]	A	G	4.688e^-4	0.856	EXON CR44558
2R	10925628	2R_10925628_SNP [dm3] 2R_15038123_SNP [dm6]	C	T	4.690e^-4	0.856	INTRON hbs
3L	17474591	3L_17474591_INS [dm3] 3L_17481491_INS [dm6]	T	TTTTCCCACTTTATTCCGT...	4.690e^-4	0.856	UTR_5_PRIME CG6333
X	19018889	X_19018889_SNP [dm3] X_19124856_SNP [dm6]	T	A	4.691e^-4	0.856	UPSTREAM CG15882 DOWNSTREAM tgy INTERGENIC
X	16801408	X_16801408_SNP [dm3] X_16907375_SNP [dm6]	T	A	4.701e^-4	0.856	INTRON CR44754
X	1643500	X_1643500_SNP [dm3] X_1749467_SNP [dm6]	T	A	4.712e^-4	0.856	INTRON Scgdelta	TF binding site mE1_TFBS_chinmo
2L	1969996	2L_1969996_SNP [dm3] 2L_1969996_SNP [dm6]	C	T	4.713e^-4	0.856	UTR_5_PRIME erm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	10061471	X_10061471_SNP [dm3] X_10167438_SNP [dm6]	C	A	4.716e^-4	0.856	INTRON CR44894 & 1 other
2L	18655074	2L_18655074_SNP [dm3] 2L_18655074_SNP [dm6]	G	A	4.717e^-4	0.856	INTRON MESR3	TF binding site mE1_TFBS_cnc
X	19018459	X_19018459_SNP [dm3] X_19124426_SNP [dm6]	T	C	4.728e^-4	0.856	UPSTREAM CG15882 DOWNSTREAM tgy INTERGENIC
2L	1854841	2L_1854841_SNP [dm3] 2L_1854841_SNP [dm6]	A	G	4.729e^-4	0.856	INTRON wry	TF binding site mE1_TFBS_chinmo
3R	6780481	3R_6780481_SNP [dm3] 3R_10954759_SNP [dm6]	C	G	4.737e^-4	0.856	INTERGENIC
2L	17313306	2L_17313306_SNP [dm3] 2L_17313306_SNP [dm6]	G	T	4.738e^-4	0.856	INTERGENIC
3L	2428533	3L_2428533_SNP [dm3] 3L_2428533_SNP [dm6]	C	T	4.743e^-4	0.856	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	17120436	2R_17120436_SNP [dm3] 2R_21232931_SNP [dm6]	G	T	4.744e^-4	0.856	INTRON ASPP
3L	10197245	3L_10197245_SNP [dm3] 3L_10204145_SNP [dm6]	T	A	4.745e^-4	0.856	INTERGENIC
3R	10432023	3R_10432023_SNP [dm3] 3R_14606301_SNP [dm6]	A	G	4.747e^-4	0.856	SYNONYMOUS_CODING stumps
3L	23470886	3L_23470886_SNP [dm3] 3L_23477786_SNP [dm6]	C	T	4.748e^-4	0.856	INTERGENIC	transposable element FlyBase
3R	20506191	3R_20506191_DEL [dm3] 3R_24680469_DEL [dm6]	CC	C	4.769e^-4	0.856	INTRON slo
X	19018399	X_19018399_SNP [dm3] X_19124366_SNP [dm6]	C	T	4.772e^-4	0.856	UTR_5_PRIME CG15882 DOWNSTREAM tgy
X	17812689	X_17812689_SNP [dm3] X_17918656_SNP [dm6]	A	G	4.776e^-4	0.856	INTRON CG6847
3R	4361746	3R_4361746_SNP [dm3] 3R_8536024_SNP [dm6]	C	T	4.779e^-4	0.856	INTERGENIC
2L	5927986	2L_5927986_SNP [dm3] 2L_5927986_SNP [dm6]	C	T	4.780e^-4	0.856	INTRON dsf
3R	9678142	3R_9678142_SNP [dm3] 3R_13852420_SNP [dm6]	A	T	4.782e^-4	0.856	INTERGENIC
3L	7831827	3L_7831827_SNP [dm3] 3L_7838727_SNP [dm6]	G	A	4.787e^-4	0.856	INTRON Pdp1	regulatory region REDfly_CRMs
3R	965045	3R_965045_SNP [dm3] 3R_5139323_SNP [dm6]	G	A	4.793e^-4	0.856	UPSTREAM CG12589 INTERGENIC
3L	21634122	3L_21634122_SNP [dm3] 3L_21641022_SNP [dm6]	C	A	4.802e^-4	0.856	UTR_5_PRIME Atox1 DOWNSTREAM CG32445	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
3L	21634123	3L_21634123_SNP [dm3] 3L_21641023_SNP [dm6]	C	A	4.802e^-4	0.856	UTR_5_PRIME Atox1 DOWNSTREAM CG32445	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
X	19018948	X_19018948_SNP [dm3] X_19124915_SNP [dm6]	A	G	4.807e^-4	0.856	UPSTREAM CG15882 DOWNSTREAM tgy INTERGENIC
2R	13556727	2R_13556727_SNP [dm3] 2R_17669222_SNP [dm6]	A	T	4.807e^-4	0.856	UTR_3_PRIME eIF3-S8 UPSTREAM CG30108 & 1 other DOWNSTREAM eIF3-S8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
2L	7167216	2L_7167216_SNP [dm3] 2L_7167216_SNP [dm6]	C	T	4.826e^-4	0.856	INTERGENIC
2L	10934515	2L_10934515_SNP [dm3] 2L_10934515_SNP [dm6]	C	T	4.827e^-4	0.856	INTRON dpr2
2R	16869904	2R_16869904_SNP [dm3] 2R_20982399_SNP [dm6]	T	C	4.827e^-4	0.856	SYNONYMOUS_CODING CG9313	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	21236336	X_21236336_SNP [dm3] X_21365309_SNP [dm6]	T	A	4.830e^-4	0.856	INTRON waw & 1 other	TF binding site mE1_TFBS_cad
3L	1487948	3L_1487948_SNP [dm3] 3L_1487948_SNP [dm6]	A	G	4.835e^-4	0.856	UPSTREAM CR43701 & 1 other INTRON stet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad
3L	18346613	3L_18346613_SNP [dm3] 3L_18353513_SNP [dm6]	G	A	4.838e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	16459539	2L_16459539_SNP [dm3] 2L_16459539_SNP [dm6]	C	T	4.838e^-4	0.856	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	10332101	2R_10332101_SNP [dm3] 2R_14444596_SNP [dm6]	G	C	4.841e^-4	0.856	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13541338	2R_13541338_DEL [dm3] 2R_17653833_DEL [dm6]	TA	T	4.842e^-4	0.856	INTRON CCHa1-R
2R	10581745	2R_10581745_SNP [dm3] 2R_14694240_SNP [dm6]	A	G	4.844e^-4	0.856	INTRON mspo
3L	23573050	3L_23573050_SNP [dm3] 3L_23579950_SNP [dm6]	A	C	4.846e^-4	0.856	INTRON AGO3	transposable element FlyBase
2L	20935753	2L_20935753_SNP [dm3] 2L_20935753_SNP [dm6]	T	A	4.848e^-4	0.856	INTERGENIC
2R	3553153	2R_3553153_SNP [dm3] 2R_7665648_SNP [dm6]	G	A	4.854e^-4	0.856	UPSTREAM CG2064 DOWNSTREAM CG2065 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	10862926	2R_10862926_SNP [dm3] 2R_14975421_SNP [dm6]	C	T	4.860e^-4	0.856	UPSTREAM ckn INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	23953498	3L_23953498_SNP [dm3] 3L_23960398_SNP [dm6]	T	A	4.874e^-4	0.856	INTRON CG40470
3L	13549289	3L_13549289_SNP [dm3] 3L_13556189_SNP [dm6]	T	C	4.891e^-4	0.856	INTRON bru-3
2L	624754	2L_624754_SNP [dm3] 2L_624754_SNP [dm6]	C	T	4.896e^-4	0.856	SYNONYMOUS_CODING lectin-21Ca UPSTREAM CR44798 & 1 other
3R	19073109	3R_19073109_SNP [dm3] 3R_23247387_SNP [dm6]	C	G	4.907e^-4	0.856	INTRON CG4467
X	17450183	X_17450183_SNP [dm3] X_17556150_SNP [dm6]	T	A	4.909e^-4	0.856	INTRON CG43658
3L	10699766	3L_10699766_DEL [dm3] 3L_10706666_DEL [dm6]	AAATCTAAAAATATTAAACC...	A	4.930e^-4	0.856	INTERGENIC
3L	10699790	3L_10699790_DEL [dm3] 3L_10706690_DEL [dm6]	GAAAAC	G	4.930e^-4	0.856	INTERGENIC
3R	21341350	3R_21341350_SNP [dm3] 3R_25515628_SNP [dm6]	G	T	4.930e^-4	0.856	UPSTREAM msi INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	3532941	3L_3532941_SNP [dm3] 3L_3532941_SNP [dm6]	T	C	4.931e^-4	0.856	INTRON Eip63E
2R	7761030	2R_7761030_SNP [dm3] 2R_11873525_SNP [dm6]	C	T	4.937e^-4	0.856	SYNONYMOUS_CODING CG13185	TF binding site mE1_TFBS_cad
2R	13931560	2R_13931560_SNP [dm3] 2R_18044055_SNP [dm6]	A	T	4.940e^-4	0.856	UTR_3_PRIME CG5770 UPSTREAM CG5773
3L	10611641	3L_10611641_SNP [dm3] 3L_10618541_SNP [dm6]	G	T	4.946e^-4	0.856	INTERGENIC
3L	10611687	3L_10611687_SNP [dm3] 3L_10618587_SNP [dm6]	A	T	4.946e^-4	0.856	INTERGENIC
3L	10611688	3L_10611688_SNP [dm3] 3L_10618588_SNP [dm6]	G	T	4.946e^-4	0.856	INTERGENIC
3L	16215223	3L_16215223_SNP [dm3] 3L_16222123_SNP [dm6]	A	G	4.950e^-4	0.856	DOWNSTREAM tRNA:CR32153 INTERGENIC
2R	9157497	2R_9157497_SNP [dm3] 2R_13269992_SNP [dm6]	C	T	4.962e^-4	0.856	INTRON Dh31-R
3L	10699818	3L_10699818_SNP [dm3] 3L_10706718_SNP [dm6]	G	C	4.965e^-4	0.856	INTERGENIC
3L	10699822	3L_10699822_DEL [dm3] 3L_10706722_DEL [dm6]	TG	A	4.965e^-4	0.856	INTERGENIC
X	18406863	X_18406863_SNP [dm3] X_18512830_SNP [dm6]	T	A	4.969e^-4	0.856	UTR_3_PRIME CG6470 UPSTREAM Ggt-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11768314	2L_11768314_SNP [dm3] 2L_11768314_SNP [dm6]	C	T	4.971e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	19018446	X_19018446_SNP [dm3] X_19124413_SNP [dm6]	A	G	4.980e^-4	0.856	UPSTREAM CG15882 DOWNSTREAM tgy INTERGENIC
2R	9103634	2R_9103634_SNP [dm3] 2R_13216129_SNP [dm6]	C	T	4.982e^-4	0.856	DOWNSTREAM CG4627 INTRON CG4630
3L	3562231	3L_3562231_INS [dm3] 3L_3562231_INS [dm6]	G	GAAG	4.984e^-4	0.856	INTRON Eip63E
X	20928212	X_20928212_SNP [dm3] X_21057185_SNP [dm6]	A	G	4.991e^-4	0.856	INTRON bves	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	21602103	3R_21602103_SNP [dm3] 3R_25776381_SNP [dm6]	C	T	4.996e^-4	0.856	SYNONYMOUS_CODING CG17195 UPSTREAM CG17196 DOWNSTREAM CG4956	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	5058500	X_5058500_SNP [dm3] X_5164467_SNP [dm6]	A	G	4.998e^-4	0.856	START_GAINED CG15465 & 1 other UTR_5_PRIME CG15465 & 1 other UPSTREAM CG15465 & 1 other INTRON rg	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	11586547	3R_11586547_SNP [dm3] 3R_15760825_SNP [dm6]	G	A	5.001e^-4	0.856	INTERGENIC
3L	18842463	3L_18842463_SNP [dm3] 3L_18849363_SNP [dm6]	A	G	5.007e^-4	0.856	INTERGENIC
3L	1144751	3L_1144751_SNP [dm3] 3L_1144751_SNP [dm6]	C	A	5.016e^-4	0.856	INTRON bab2
2R	16865527	2R_16865527_SNP [dm3] 2R_20978022_SNP [dm6]	C	T	5.018e^-4	0.856	SYNONYMOUS_CODING CG15650 UPSTREAM CG9313 DOWNSTREAM CG9344
2L	10286601	2L_10286601_SNP [dm3] 2L_10286601_SNP [dm6]	A	T	5.022e^-4	0.856	SYNONYMOUS_CODING CG5604	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	390335	3L_390335_SNP [dm3] 3L_390335_SNP [dm6]	C	T	5.022e^-4	0.856	INTRON trh
2L	19360447	2L_19360447_SNP [dm3] 2L_19360447_SNP [dm6]	A	C	5.025e^-4	0.856	INTRON dnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	14622018	X_14622018_SNP [dm3] X_14727985_SNP [dm6]	C	G	5.026e^-4	0.856	INTRON NetB
2R	16431081	2R_16431081_SNP [dm3] 2R_20543576_SNP [dm6]	A	G	5.028e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20300319	3R_20300319_INS [dm3] 3R_24474597_INS [dm6]	A	AGCACCA	5.029e^-4	0.856	INTERGENIC
X	13332044	X_13332044_SNP [dm3] X_13438011_SNP [dm6]	A	T	5.043e^-4	0.856	INTERGENIC
X	18518951	X_18518951_SNP [dm3] X_18624918_SNP [dm6]	C	G	5.051e^-4	0.856	UTR_3_PRIME wgn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5847307	3R_5847307_SNP [dm3] 3R_10021585_SNP [dm6]	A	T	5.061e^-4	0.856	UPSTREAM Mical INTRON Mical	TF binding site mE1_TFBS_HSA
2L	7431916	2L_7431916_SNP [dm3] 2L_7431916_SNP [dm6]	T	C	5.068e^-4	0.856	INTRON CG5958
2L	15003080	2L_15003080_SNP [dm3] 2L_15003080_SNP [dm6]	G	A	5.071e^-4	0.856	INTERGENIC
X	19871664	X_19871664_SNP [dm3] X_19977631_SNP [dm6]	C	G	5.071e^-4	0.856	INTERGENIC
2L	13027014	2L_13027014_SNP [dm3] 2L_13027014_SNP [dm6]	A	G	5.078e^-4	0.856	SYNONYMOUS_CODING CG9932 INTRON CG9932	TF binding site mE1_TFBS_chinmo
2R	10578756	2R_10578756_SNP [dm3] 2R_14691251_SNP [dm6]	T	C	5.090e^-4	0.856	INTRON mspo
3L	10197228	3L_10197228_SNP [dm3] 3L_10204128_SNP [dm6]	C	T	5.094e^-4	0.856	INTERGENIC
3L	10000475	3L_10000475_SNP [dm3] 3L_10007375_SNP [dm6]	A	T	5.102e^-4	0.856	INTRON dpr6
3L	10000478	3L_10000478_SNP [dm3] 3L_10007378_SNP [dm6]	T	C	5.102e^-4	0.856	INTRON dpr6
3L	14356997	3L_14356997_SNP [dm3] 3L_14363897_SNP [dm6]	T	A	5.110e^-4	0.856	INTRON fz
X	11952680	X_11952680_SNP [dm3] X_12058647_SNP [dm6]	G	C	5.110e^-4	0.856	INTRON CR43960 & 1 other
X	18519000	X_18519000_SNP [dm3] X_18624967_SNP [dm6]	G	T	5.113e^-4	0.856	SYNONYMOUS_CODING wgn UTR_3_PRIME wgn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19257537	2R_19257537_SNP [dm3] 2R_23370014_SNP [dm6]	A	T	5.116e^-4	0.856	NON_SYNONYMOUS_CODING Ice1
3R	5769824	3R_5769824_SNP [dm3] 3R_9944102_SNP [dm6]	G	A	5.119e^-4	0.856	UTR_3_PRIME Glut4EF INTRON Glut4EF
3L	9716433	3L_9716433_SNP [dm3] 3L_9723333_SNP [dm6]	A	T	5.120e^-4	0.856	UPSTREAM defl & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	19243629	3R_19243629_SNP [dm3] 3R_23417907_SNP [dm6]	A	G	5.126e^-4	0.856	INTRON CG4374
2L	2743707	2L_2743707_SNP [dm3] 2L_2743707_SNP [dm6]	G	C	5.135e^-4	0.856	SYNONYMOUS_CODING CG9961 UTR_3_PRIME CG9961 DOWNSTREAM Hrs
3L	9703161	3L_9703161_SNP [dm3] 3L_9710061_SNP [dm6]	C	T	5.145e^-4	0.856	UTR_3_PRIME CG16711 DOWNSTREAM SH3PX1 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3547722	3L_3547722_SNP [dm3] 3L_3547722_SNP [dm6]	T	C	5.152e^-4	0.856	INTRON Eip63E
3R	18720111	3R_18720111_DEL [dm3] 3R_22894389_DEL [dm6]	AAATGTGTATATATATCC...	A	5.153e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
X	19019021	X_19019021_SNP [dm3] X_19124988_SNP [dm6]	T	A	5.156e^-4	0.856	UPSTREAM CG15882 DOWNSTREAM tgy INTERGENIC
3L	9326921	3L_9326921_SNP [dm3] 3L_9333821_SNP [dm6]	T	C	5.158e^-4	0.856	UPSTREAM PGRP-LA INTERGENIC
3R	5816807	3R_5816807_SNP [dm3] 3R_9991085_SNP [dm6]	A	G	5.161e^-4	0.856	UTR_3_PRIME Glut4EF
2R	12076337	2R_12076337_SNP [dm3] 2R_16188832_SNP [dm6]	C	T	5.165e^-4	0.856	SYNONYMOUS_CODING clu START_GAINED clu UTR_5_PRIME clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	11857221	3R_11857221_SNP [dm3] 3R_16031499_SNP [dm6]	G	T	5.174e^-4	0.856	INTRON pnr
3L	3531548	3L_3531548_SNP [dm3] 3L_3531548_SNP [dm6]	A	G	5.174e^-4	0.856	INTRON Eip63E
2R	8992074	2R_8992074_SNP [dm3] 2R_13104569_SNP [dm6]	A	G	5.177e^-4	0.856	SYNONYMOUS_CODING CG44341
2L	14992370	2L_14992370_SNP [dm3] 2L_14992370_SNP [dm6]	G	A	5.189e^-4	0.856	SYNONYMOUS_CODING mol UTR_5_PRIME mol
3L	7949509	3L_7949509_SNP [dm3] 3L_7956409_SNP [dm6]	A	C	5.196e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9231511	2L_9231511_SNP [dm3] 2L_9231511_SNP [dm6]	T	C	5.205e^-4	0.856	INTRON tai
2L	19371701	2L_19371701_SNP [dm3] 2L_19371701_SNP [dm6]	C	T	5.206e^-4	0.856	INTRON CG17349
2L	9323918	2L_9323918_SNP [dm3] 2L_9323918_SNP [dm6]	C	G	5.206e^-4	0.856	INTERGENIC

By genomic position
Variant impact
Gene name

Thorax_Length phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results