DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.592e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.03761

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.2572	0.0722
In_3R_Mo	4.6425	0.0981

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2195 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

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Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	16239657	2L_16239657_SNP [dm3] 2L_16239657_SNP [dm6]	C	T	1.346e^-6	0.429	INTRON CG42817
2R	10343861	2R_10343861_SNP [dm3] 2R_14456356_SNP [dm6]	T	G	1.573e^-6	0.429	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25317005	3R_25317005_MNP [dm3] 3R_29491283_MNP [dm6]	TTTA	GCAT	1.706e^-6	0.429	UTR_3_PRIME CG2006 UPSTREAM Spase12 DOWNSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	10578635	2R_10578635_SNP [dm3] 2R_14691130_SNP [dm6]	T	C	1.763e^-6	0.429	INTRON mspo
3L	7700032	3L_7700032_SNP [dm3] 3L_7706932_SNP [dm6]	G	T	1.780e^-6	0.429	INTRON CG32373 & 1 other
3R	25317012	3R_25317012_SNP [dm3] 3R_29491290_SNP [dm6]	T	A	1.872e^-6	0.429	UTR_3_PRIME CG2006 UPSTREAM Spase12 DOWNSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	18478788	3R_18478788_SNP [dm3] 3R_22653066_SNP [dm6]	G	A	2.299e^-6	0.429	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16239654	2L_16239654_SNP [dm3] 2L_16239654_SNP [dm6]	T	C	2.384e^-6	0.429	INTRON CG42817
3R	17823921	3R_17823921_SNP [dm3] 3R_21998199_SNP [dm6]	C	T	2.577e^-6	0.429	INTRON Eip93F
3R	22682213	3R_22682213_SNP [dm3] 3R_26856491_SNP [dm6]	A	T	2.803e^-6	0.429	INTRON Lerp
2L	15759696	2L_15759696_SNP [dm3] 2L_15759696_SNP [dm6]	G	A	2.850e^-6	0.429	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	18478815	3R_18478815_SNP [dm3] 3R_22653093_SNP [dm6]	T	C	2.899e^-6	0.429	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19439532	2R_19439532_SNP [dm3] 2R_23552009_SNP [dm6]	T	A	2.974e^-6	0.429	UPSTREAM pita INTRON pita & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	20404418	2L_20404418_SNP [dm3] 2L_20404418_SNP [dm6]	G	A	3.453e^-6	0.453	INTRON CG10947
3R	22682225	3R_22682225_SNP [dm3] 3R_26856503_SNP [dm6]	T	C	3.960e^-6	0.453	INTRON Lerp
2L	16239646	2L_16239646_SNP [dm3] 2L_16239646_SNP [dm6]	T	C	3.978e^-6	0.453	INTRON CG42817
2L	11010499	2L_11010499_SNP [dm3] 2L_11010499_SNP [dm6]	C	T	4.107e^-6	0.453	SYNONYMOUS_CODING Art8 UTR_3_PRIME Nup154 UPSTREAM dUTPase DOWNSTREAM Nup154	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	10344070	2R_10344070_SNP [dm3] 2R_14456565_SNP [dm6]	G	C	4.476e^-6	0.466	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22682208	3R_22682208_SNP [dm3] 3R_26856486_SNP [dm6]	A	C	4.949e^-6	0.488	INTRON Lerp
2R	17730878	2R_17730878_SNP [dm3] 2R_21843373_SNP [dm6]	G	C	5.381e^-6	0.504	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8137681	2R_8137681_SNP [dm3] 2R_12250176_SNP [dm6]	A	C	5.913e^-6	0.528	INTERGENIC
3L	10699904	3L_10699904_INS [dm3] 3L_10706804_INS [dm6]	A	AA	6.582e^-6	0.561	INTERGENIC
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	7.869e^-6	0.568	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11010372	2L_11010372_SNP [dm3] 2L_11010372_SNP [dm6]	G	T	8.375e^-6	0.568	SYNONYMOUS_CODING Art8 UTR_3_PRIME Nup154 UPSTREAM dUTPase DOWNSTREAM Nup154	TF binding site mE1_TFBS_sens
2R	10344098	2R_10344098_SNP [dm3] 2R_14456593_SNP [dm6]	A	C	8.674e^-6	0.568	INTRON Oaz	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7484520	3L_7484520_SNP [dm3] 3L_7491420_SNP [dm6]	T	A	8.736e^-6	0.568	UPSTREAM Cyp316a1 INTERGENIC
3R	22682233	3R_22682233_SNP [dm3] 3R_26856511_SNP [dm6]	G	A	9.037e^-6	0.568	INTRON Lerp
3L	7484492	3L_7484492_SNP [dm3] 3L_7491392_SNP [dm6]	G	T	9.060e^-6	0.568	UPSTREAM Cyp316a1 INTERGENIC
3R	21876295	3R_21876295_SNP [dm3] 3R_26050573_SNP [dm6]	T	C	9.662e^-6	0.568	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8203625	2L_8203625_SNP [dm3] 2L_8203625_SNP [dm6]	C	T	1.010e^-5	0.568	SYNONYMOUS_CODING SLC5A11 INTRON CR44119
2R	10344067	2R_10344067_SNP [dm3] 2R_14456562_SNP [dm6]	G	C	1.011e^-5	0.568	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21114770	X_21114770_SNP [dm3] X_21243743_SNP [dm6]	A	T	1.014e^-5	0.568	INTRON CG32521
3L	16867305	3L_16867305_SNP [dm3] 3L_16874205_SNP [dm6]	G	A	1.042e^-5	0.568	INTRON Lmpt
X	21116232	X_21116232_SNP [dm3] X_21245205_SNP [dm6]	T	C	1.062e^-5	0.568	INTRON CG32521
2R	10344071	2R_10344071_INS [dm3] 2R_14456566_INS [dm6]	A	ACT	1.137e^-5	0.568	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11461243	2R_11461243_SNP [dm3] 2R_15573738_SNP [dm6]	T	A	1.142e^-5	0.568	START_GAINED CG8204 UTR_5_PRIME CG8204 DOWNSTREAM CG30466	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	10344115	2R_10344115_SNP [dm3] 2R_14456610_SNP [dm6]	C	G	1.148e^-5	0.568	INTRON Oaz	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13549586	3L_13549586_SNP [dm3] 3L_13556486_SNP [dm6]	C	A	1.152e^-5	0.568	INTRON bru-3
2R	8137678	2R_8137678_SNP [dm3] 2R_12250173_SNP [dm6]	T	C	1.226e^-5	0.578	INTERGENIC
2R	8137710	2R_8137710_SNP [dm3] 2R_12250205_SNP [dm6]	C	A	1.279e^-5	0.578	INTERGENIC
2L	2782693	2L_2782693_SNP [dm3] 2L_2782693_SNP [dm6]	A	G	1.321e^-5	0.578	UTR_3_PRIME Syt1
2L	11219826	2L_11219826_SNP [dm3] 2L_11219826_SNP [dm6]	A	C	1.322e^-5	0.578	INTRON ab	TF binding site BDTNP1_TFBS_da
3L	7484565	3L_7484565_SNP [dm3] 3L_7491465_SNP [dm6]	G	C	1.325e^-5	0.578	UPSTREAM Cyp316a1 INTERGENIC
3R	23513340	3R_23513340_SNP [dm3] 3R_27687618_SNP [dm6]	C	T	1.381e^-5	0.586	NON_SYNONYMOUS_CODING CG31055 INTRON CG12880	TF binding site mE1_TFBS_chinmo
2R	11822982	2R_11822982_SNP [dm3] 2R_15935477_SNP [dm6]	A	T	1.406e^-5	0.586	SYNONYMOUS_CODING CG8297 UPSTREAM Iap2 DOWNSTREAM Mlf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	27248891	3R_27248891_SNP [dm3] 3R_31423169_SNP [dm6]	G	T	1.565e^-5	0.587	INTRON Gprk2
3L	14949888	3L_14949888_SNP [dm3] 3L_14956788_SNP [dm6]	C	T	1.579e^-5	0.587	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	16547522	2L_16547522_DEL [dm3] 2L_16547522_DEL [dm6]	AA	A	1.677e^-5	0.587	INTRON CG42389
3L	7484493	3L_7484493_SNP [dm3] 3L_7491393_SNP [dm6]	C	T	1.748e^-5	0.587	UPSTREAM Cyp316a1 INTERGENIC
3L	16245081	3L_16245081_SNP [dm3] 3L_16251981_SNP [dm6]	G	T	1.748e^-5	0.587	SYNONYMOUS_CODING CG13055	TF binding site mE1_TFBS_chinmo
2L	7934932	2L_7934932_SNP [dm3] 2L_7934932_SNP [dm6]	A	C	1.769e^-5	0.587	INTRON Snoo
3R	24727035	3R_24727035_SNP [dm3] 3R_28901313_SNP [dm6]	C	T	1.780e^-5	0.587	INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17926743	3L_17926743_INS [dm3] 3L_17933643_INS [dm6]	A	ACA	1.811e^-5	0.587	UPSTREAM CG43173 & 1 other INTERGENIC
X	19870082	X_19870082_DEL [dm3] X_19976049_DEL [dm6]	TTTGT	T	1.831e^-5	0.587	INTERGENIC
2L	15090507	2L_15090507_SNP [dm3] 2L_15090507_SNP [dm6]	T	C	1.853e^-5	0.587	INTRON CG15270
3L	7484626	3L_7484626_SNP [dm3] 3L_7491526_SNP [dm6]	G	T	1.867e^-5	0.587	UPSTREAM Cyp316a1 INTERGENIC
2R	10346354	2R_10346354_SNP [dm3] 2R_14458849_SNP [dm6]	A	G	1.882e^-5	0.587	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	19869871	X_19869871_SNP [dm3] X_19975838_SNP [dm6]	C	T	1.910e^-5	0.587	INTERGENIC
2R	8136809	2R_8136809_SNP [dm3] 2R_12249304_SNP [dm6]	G	T	1.913e^-5	0.587	INTERGENIC
2L	9487588	2L_9487588_SNP [dm3] 2L_9487588_SNP [dm6]	A	G	1.927e^-5	0.587	INTERGENIC
2R	10347193	2R_10347193_SNP [dm3] 2R_14459688_SNP [dm6]	T	C	1.932e^-5	0.587	INTRON Oaz
2L	7586241	2L_7586241_DEL [dm3] 2L_7586241_DEL [dm6]	GG	G	1.942e^-5	0.587	INTERGENIC
2L	19027934	2L_19027934_SNP [dm3] 2L_19027934_SNP [dm6]	T	C	1.995e^-5	0.594	UTR_5_PRIME Side
2R	17730873	2R_17730873_SNP [dm3] 2R_21843368_SNP [dm6]	C	A	2.064e^-5	0.603	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	2735393	2L_2735393_SNP [dm3] 2L_2735393_SNP [dm6]	C	A	2.090e^-5	0.603	UPSTREAM CG31689 INTRON CG31689
2R	11730831	2R_11730831_SNP [dm3] 2R_15843326_SNP [dm6]	C	A	2.127e^-5	0.604	UTR_3_PRIME CG8249 DOWNSTREAM CG8249 INTRON tun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	718515	3L_718515_SNP [dm3] 3L_718515_SNP [dm6]	A	C	2.200e^-5	0.61	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3562242	3L_3562242_SNP [dm3] 3L_3562242_SNP [dm6]	C	A	2.222e^-5	0.61	INTRON Eip63E
X	20218269	X_20218269_SNP [dm3] X_20347242_SNP [dm6]	C	A	2.272e^-5	0.61	INTERGENIC
2R	10344131	2R_10344131_SNP [dm3] 2R_14456626_SNP [dm6]	A	G	2.276e^-5	0.61	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16961944	2R_16961944_DEL [dm3] 2R_21074439_DEL [dm6]	TAAATA	T	2.331e^-5	0.615	INTRON Treh
X	21116655	X_21116655_SNP [dm3] X_21245628_SNP [dm6]	T	A	2.386e^-5	0.616	INTRON CG32521
3R	9960186	3R_9960186_SNP [dm3] 3R_14134464_SNP [dm6]	C	A	2.399e^-5	0.616	INTERGENIC
2R	17078601	2R_17078601_SNP [dm3] 2R_21191096_SNP [dm6]	A	G	2.506e^-5	0.625	NON_SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6381844	X_6381844_SNP [dm3] X_6487811_SNP [dm6]	C	A	2.511e^-5	0.625	INTRON CG42340
2L	18885261	2L_18885261_SNP [dm3] 2L_18885261_SNP [dm6]	C	G	2.551e^-5	0.625	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	10344121	2R_10344121_SNP [dm3] 2R_14456616_SNP [dm6]	T	C	2.633e^-5	0.625	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26042451	3R_26042451_SNP [dm3] 3R_30216729_SNP [dm6]	A	T	2.643e^-5	0.625	INTRON CecC
2R	17078585	2R_17078585_SNP [dm3] 2R_21191080_SNP [dm6]	A	G	2.673e^-5	0.625	NON_SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	3532145	2R_3532145_SNP [dm3] 2R_7644640_SNP [dm6]	T	A	2.685e^-5	0.625	SYNONYMOUS_CODING CG43340 INTRON CG43340
2R	13506075	2R_13506075_SNP [dm3] 2R_17618570_SNP [dm6]	T	G	2.701e^-5	0.625	UPSTREAM CG44403 INTRON CG10936
2R	10503570	2R_10503570_SNP [dm3] 2R_14616065_SNP [dm6]	A	C	2.762e^-5	0.63	NON_SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2	TF binding site mE1_TFBS_HSA
3R	5899901	3R_5899901_SNP [dm3] 3R_10074179_SNP [dm6]	A	C	2.790e^-5	0.63	SYNONYMOUS_CODING CG5361 DOWNSTREAM nerfin-2
2R	8137206	2R_8137206_SNP [dm3] 2R_12249701_SNP [dm6]	T	C	2.907e^-5	0.649	INTERGENIC
X	19870093	X_19870093_SNP [dm3] X_19976060_SNP [dm6]	A	T	2.991e^-5	0.66	INTERGENIC
2L	19209731	2L_19209731_SNP [dm3] 2L_19209731_SNP [dm6]	T	C	3.068e^-5	0.66	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3558315	3L_3558315_SNP [dm3] 3L_3558315_SNP [dm6]	T	C	3.178e^-5	0.66	INTRON Eip63E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15884106	2R_15884106_SNP [dm3] 2R_19996601_SNP [dm6]	G	C	3.225e^-5	0.66	INTERGENIC
X	19250476	X_19250476_SNP [dm3] X_19356443_SNP [dm6]	A	T	3.274e^-5	0.66	INTRON kek5
3R	10270734	3R_10270734_SNP [dm3] 3R_14445012_SNP [dm6]	C	T	3.340e^-5	0.66	INTRON cv-c	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3553253	3L_3553253_SNP [dm3] 3L_3553253_SNP [dm6]	T	G	3.362e^-5	0.66	INTRON Eip63E
X	20215704	X_20215704_SNP [dm3] X_20344677_SNP [dm6]	G	A	3.409e^-5	0.66	INTERGENIC
2R	10345162	2R_10345162_SNP [dm3] 2R_14457657_SNP [dm6]	C	T	3.482e^-5	0.66	UPSTREAM Oaz INTRON Oaz	TF binding site mE1_TFBS_HSA
3L	1362124	3L_1362124_SNP [dm3] 3L_1362124_SNP [dm6]	A	G	3.502e^-5	0.66	INTRON Ptp61F
X	14694862	X_14694862_SNP [dm3] X_14800829_SNP [dm6]	C	T	3.617e^-5	0.66	SYNONYMOUS_CODING rut
X	6381838	X_6381838_SNP [dm3] X_6487805_SNP [dm6]	C	A	3.641e^-5	0.66	INTRON CG42340
3R	5121979	3R_5121979_SNP [dm3] 3R_9296257_SNP [dm6]	T	G	3.646e^-5	0.66	INTRON CG8861
2R	15267497	2R_15267497_SNP [dm3] 2R_19379992_SNP [dm6]	G	A	3.680e^-5	0.66	SYNONYMOUS_CODING CG10062 UPSTREAM CG10073
2R	12828595	2R_12828595_SNP [dm3] 2R_16941090_SNP [dm6]	T	G	3.682e^-5	0.66	INTRON Pkc53E
2R	20202142	2R_20202142_SNP [dm3] 2R_24314619_SNP [dm6]	A	C	3.706e^-5	0.66	INTERGENIC

Showing 1 to 100 of 1,000 entries

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GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.523e^-2)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.01228

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	9.5173	0.0086

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2031 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	21876295	3R_21876295_SNP [dm3] 3R_26050573_SNP [dm6]	T	C	8.657e^-7	0.856	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13549586	3L_13549586_SNP [dm3] 3L_13556486_SNP [dm6]	C	A	2.484e^-6	0.856	INTRON bru-3
2R	10578635	2R_10578635_SNP [dm3] 2R_14691130_SNP [dm6]	T	C	4.324e^-6	0.856	INTRON mspo
2L	7586313	2L_7586313_SNP [dm3] 2L_7586313_SNP [dm6]	G	C	4.465e^-6	0.856	INTERGENIC
3L	16867305	3L_16867305_SNP [dm3] 3L_16874205_SNP [dm6]	G	A	4.550e^-6	0.856	INTRON Lmpt
X	15135061	X_15135061_SNP [dm3] X_15241028_SNP [dm6]	G	C	4.878e^-6	0.856	INTERGENIC
2R	3554713	2R_3554713_SNP [dm3] 2R_7667208_SNP [dm6]	A	C	4.932e^-6	0.856	SYNONYMOUS_CODING CG2064 DOWNSTREAM CG12042
3L	10699904	3L_10699904_INS [dm3] 3L_10706804_INS [dm6]	A	AA	5.016e^-6	0.856	INTERGENIC
2L	15090507	2L_15090507_SNP [dm3] 2L_15090507_SNP [dm6]	T	C	5.026e^-6	0.856	INTRON CG15270
3L	718515	3L_718515_SNP [dm3] 3L_718515_SNP [dm6]	A	C	5.224e^-6	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10288401	2L_10288401_SNP [dm3] 2L_10288401_SNP [dm6]	C	G	5.608e^-6	0.856	SYNONYMOUS_CODING CG5604
2L	11010499	2L_11010499_SNP [dm3] 2L_11010499_SNP [dm6]	C	T	7.143e^-6	0.856	SYNONYMOUS_CODING Art8 UTR_3_PRIME Nup154 UPSTREAM dUTPase DOWNSTREAM Nup154	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	13583841	3R_13583841_INS [dm3] 3R_17758119_INS [dm6]	T	TT	7.264e^-6	0.856	INTRON TyrR
3R	5878383	3R_5878383_SNP [dm3] 3R_10052661_SNP [dm6]	G	T	7.436e^-6	0.856	UPSTREAM Npc2e DOWNSTREAM CR44192 INTRON Fancl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	5878395	3R_5878395_SNP [dm3] 3R_10052673_SNP [dm6]	A	G	8.934e^-6	0.856	UPSTREAM Npc2e DOWNSTREAM CR44192 INTRON Fancl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	1.064e^-5	0.856	EXON CR44950
3L	7700032	3L_7700032_SNP [dm3] 3L_7706932_SNP [dm6]	G	T	1.073e^-5	0.856	INTRON CG32373 & 1 other
X	19250476	X_19250476_SNP [dm3] X_19356443_SNP [dm6]	A	T	1.141e^-5	0.856	INTRON kek5
3L	13549577	3L_13549577_SNP [dm3] 3L_13556477_SNP [dm6]	G	A	1.162e^-5	0.856	INTRON bru-3
3R	10969892	3R_10969892_SNP [dm3] 3R_15144170_SNP [dm6]	A	G	1.188e^-5	0.856	INTRON GlyS	TF binding site mE1_TFBS_cad
2R	15267497	2R_15267497_SNP [dm3] 2R_19379992_SNP [dm6]	G	A	1.376e^-5	0.856	SYNONYMOUS_CODING CG10062 UPSTREAM CG10073
3R	9960186	3R_9960186_SNP [dm3] 3R_14134464_SNP [dm6]	C	A	1.423e^-5	0.856	INTERGENIC
2L	19027934	2L_19027934_SNP [dm3] 2L_19027934_SNP [dm6]	T	C	1.497e^-5	0.856	UTR_5_PRIME Side
3R	16184077	3R_16184077_SNP [dm3] 3R_20358355_SNP [dm6]	A	T	1.501e^-5	0.856	UPSTREAM CR45023 INTERGENIC
3R	9960183	3R_9960183_SNP [dm3] 3R_14134461_SNP [dm6]	G	T	2.094e^-5	0.856	INTERGENIC
2L	11010372	2L_11010372_SNP [dm3] 2L_11010372_SNP [dm6]	G	T	2.120e^-5	0.856	SYNONYMOUS_CODING Art8 UTR_3_PRIME Nup154 UPSTREAM dUTPase DOWNSTREAM Nup154	TF binding site mE1_TFBS_sens
2R	4036986	2R_4036986_SNP [dm3] 2R_8149481_SNP [dm6]	A	C	2.199e^-5	0.856	UPSTREAM kermit INTRON Lpin & 1 other	TF binding site mE1_TFBS_cad
3R	9960187	3R_9960187_SNP [dm3] 3R_14134465_SNP [dm6]	C	T	2.256e^-5	0.856	INTERGENIC
X	10061528	X_10061528_SNP [dm3] X_10167495_SNP [dm6]	C	A	2.297e^-5	0.856	INTRON CR44894 & 1 other
2L	15090517	2L_15090517_SNP [dm3] 2L_15090517_SNP [dm6]	A	G	2.312e^-5	0.856	INTRON CG15270
3R	10969882	3R_10969882_SNP [dm3] 3R_15144160_SNP [dm6]	A	C	2.562e^-5	0.856	INTRON GlyS	TF binding site mE1_TFBS_cad
3L	18346603	3L_18346603_SNP [dm3] 3L_18353503_SNP [dm6]	G	T	2.607e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	1542672	2L_1542672_SNP [dm3] 2L_1542672_SNP [dm6]	C	T	2.622e^-5	0.856	INTERGENIC
2L	18885261	2L_18885261_SNP [dm3] 2L_18885261_SNP [dm6]	C	G	2.724e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	13659328	2R_13659328_SNP [dm3] 2R_17771823_SNP [dm6]	T	C	2.739e^-5	0.856	INTRON CG6362	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7057433	2L_7057433_SNP [dm3] 2L_7057433_SNP [dm6]	C	T	2.795e^-5	0.856	SYNONYMOUS_CODING Mnn1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8203812	2L_8203812_SNP [dm3] 2L_8203812_SNP [dm6]	C	T	3.021e^-5	0.856	INTRON CR44119 & 1 other
2R	8136809	2R_8136809_SNP [dm3] 2R_12249304_SNP [dm6]	G	T	3.049e^-5	0.856	INTERGENIC
3R	5785958	3R_5785958_SNP [dm3] 3R_9960236_SNP [dm6]	T	C	3.151e^-5	0.856	INTRON Glut4EF
2R	11540873	2R_11540873_SNP [dm3] 2R_15653368_SNP [dm6]	G	C	3.349e^-5	0.856	INTRON CG42524
2L	11219826	2L_11219826_SNP [dm3] 2L_11219826_SNP [dm6]	A	C	3.366e^-5	0.856	INTRON ab	TF binding site BDTNP1_TFBS_da
2R	3532145	2R_3532145_SNP [dm3] 2R_7644640_SNP [dm6]	T	A	3.449e^-5	0.856	SYNONYMOUS_CODING CG43340 INTRON CG43340
3L	3562229	3L_3562229_SNP [dm3] 3L_3562229_SNP [dm6]	A	G	3.551e^-5	0.856	INTRON Eip63E
2L	22020494	2L_22020494_SNP [dm3] 2L_22020494_SNP [dm6]	A	G	3.592e^-5	0.856	DOWNSTREAM CR33987 INTRON tio	TF binding site mE1_TFBS_Trl
2R	5895310	2R_5895310_SNP [dm3] 2R_10007805_SNP [dm6]	T	A	3.600e^-5	0.856	INTRON Pka-R2
3L	3547769	3L_3547769_SNP [dm3] 3L_3547769_SNP [dm6]	T	C	3.615e^-5	0.856	INTRON Eip63E
3R	20565182	3R_20565182_SNP [dm3] 3R_24739460_SNP [dm6]	T	G	3.620e^-5	0.856	INTRON tok
3L	18998410	3L_18998410_SNP [dm3] 3L_19005310_SNP [dm6]	C	G	3.697e^-5	0.856	NON_SYNONYMOUS_CODING nkd UTR_3_PRIME nkd	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	11530467	2R_11530467_SNP [dm3] 2R_15642962_SNP [dm6]	T	A	3.753e^-5	0.856	INTRON CG42524
2R	17725920	2R_17725920_SNP [dm3] 2R_21838415_SNP [dm6]	C	T	3.807e^-5	0.856	SYNONYMOUS_CODING CG4372
3R	18478788	3R_18478788_SNP [dm3] 3R_22653066_SNP [dm6]	G	A	3.813e^-5	0.856	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1362124	3L_1362124_SNP [dm3] 3L_1362124_SNP [dm6]	A	G	3.853e^-5	0.856	INTRON Ptp61F
X	5058698	X_5058698_SNP [dm3] X_5164665_SNP [dm6]	T	A	4.001e^-5	0.856	UTR_5_PRIME CG15465 & 1 other UPSTREAM CG15465 & 1 other INTRON rg	TF binding site mE1_TFBS_Trl
3R	5786011	3R_5786011_SNP [dm3] 3R_9960289_SNP [dm6]	T	A	4.119e^-5	0.856	INTRON Glut4EF
3R	12745588	3R_12745588_SNP [dm3] 3R_16919866_SNP [dm6]	A	G	4.260e^-5	0.856	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	19439532	2R_19439532_SNP [dm3] 2R_23552009_SNP [dm6]	T	A	4.439e^-5	0.856	UPSTREAM pita INTRON pita & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	3547796	3L_3547796_SNP [dm3] 3L_3547796_SNP [dm6]	T	A	4.452e^-5	0.856	INTRON Eip63E
3L	2124435	3L_2124435_SNP [dm3] 3L_2124435_SNP [dm6]	T	A	4.460e^-5	0.856	SYNONYMOUS_CODING zormin INTRON zormin
X	5058675	X_5058675_SNP [dm3] X_5164642_SNP [dm6]	C	A	4.610e^-5	0.856	UTR_5_PRIME CG15465 & 1 other UPSTREAM CG15465 & 1 other INTRON rg	TF binding site mE1_TFBS_Trl
X	20936848	X_20936848_SNP [dm3] X_21065821_SNP [dm6]	T	A	4.655e^-5	0.856	INTRON bves & 1 other
X	18645733	X_18645733_SNP [dm3] X_18751700_SNP [dm6]	C	A	4.664e^-5	0.856	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11334522	2L_11334522_SNP [dm3] 2L_11334522_SNP [dm6]	A	C	4.762e^-5	0.856	INTERGENIC
3R	18478815	3R_18478815_SNP [dm3] 3R_22653093_SNP [dm6]	T	C	4.771e^-5	0.856	INTRON CG45058	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17193468	3L_17193468_SNP [dm3] 3L_17200368_SNP [dm6]	G	A	4.780e^-5	0.856	INTRON Rbp6
3R	14616564	3R_14616564_SNP [dm3] 3R_18790842_SNP [dm6]	T	C	4.793e^-5	0.856	INTRON CG7720
3R	21014655	3R_21014655_SNP [dm3] 3R_25188933_SNP [dm6]	G	A	4.971e^-5	0.856	INTRON lobo & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	7484520	3L_7484520_SNP [dm3] 3L_7491420_SNP [dm6]	T	A	5.052e^-5	0.856	UPSTREAM Cyp316a1 INTERGENIC
3L	17926743	3L_17926743_INS [dm3] 3L_17933643_INS [dm6]	A	ACA	5.056e^-5	0.856	UPSTREAM CG43173 & 1 other INTERGENIC
2L	11765513	2L_11765513_SNP [dm3] 2L_11765513_SNP [dm6]	T	C	5.077e^-5	0.856	INTERGENIC
3R	25912874	3R_25912874_SNP [dm3] 3R_30087152_SNP [dm6]	C	A	5.141e^-5	0.856	INTRON sima
2R	8137681	2R_8137681_SNP [dm3] 2R_12250176_SNP [dm6]	A	C	5.214e^-5	0.856	INTERGENIC
2R	11822982	2R_11822982_SNP [dm3] 2R_15935477_SNP [dm6]	A	T	5.292e^-5	0.856	SYNONYMOUS_CODING CG8297 UPSTREAM Iap2 DOWNSTREAM Mlf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10604623	3L_10604623_SNP [dm3] 3L_10611523_SNP [dm6]	G	A	5.330e^-5	0.856	INTERGENIC
2L	13869018	2L_13869018_SNP [dm3] 2L_13869018_SNP [dm6]	G	T	5.380e^-5	0.856	INTRON CenG1A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13451571	3R_13451571_SNP [dm3] 3R_17625849_SNP [dm6]	A	G	5.528e^-5	0.856	NON_SYNONYMOUS_CODING AttD UPSTREAM tRNA:T:90Cb
3R	3407166	3R_3407166_SNP [dm3] 3R_7581444_SNP [dm6]	A	G	5.530e^-5	0.856	INTRON CG34127
3R	26864084	3R_26864084_SNP [dm3] 3R_31038362_SNP [dm6]	T	C	5.545e^-5	0.856	INTERGENIC
3L	2596450	3L_2596450_SNP [dm3] 3L_2596450_SNP [dm6]	G	A	5.643e^-5	0.856	SYNONYMOUS_CODING CG16984 UTR_3_PRIME CG12182 DOWNSTREAM dos & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26864029	3R_26864029_SNP [dm3] 3R_31038307_SNP [dm6]	G	A	5.666e^-5	0.856	INTERGENIC
3R	5878522	3R_5878522_SNP [dm3] 3R_10052800_SNP [dm6]	T	C	5.826e^-5	0.856	NON_SYNONYMOUS_CODING Fancl UPSTREAM Npc2e DOWNSTREAM CR44192	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16044740	2R_16044740_INS [dm3] 2R_20157235_INS [dm6]	A	ATTA	5.834e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19409961	2R_19409961_SNP [dm3] 2R_23522438_SNP [dm6]	C	A	5.837e^-5	0.856	INTRON RabX1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	1098649	3L_1098649_SNP [dm3] 3L_1098649_SNP [dm6]	G	T	5.865e^-5	0.856	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	4855172	2L_4855172_SNP [dm3] 2L_4855172_SNP [dm6]	G	A	5.893e^-5	0.856	INTRON pog
X	21231603	X_21231603_SNP [dm3] X_21360576_SNP [dm6]	C	T	5.895e^-5	0.856	INTRON Sep1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	5786016	3R_5786016_SNP [dm3] 3R_9960294_SNP [dm6]	C	T	5.961e^-5	0.856	INTRON Glut4EF
2L	21998906	2L_21998906_SNP [dm3] 2L_21998906_SNP [dm6]	C	A	5.991e^-5	0.856	DOWNSTREAM CR44916 INTERGENIC	transposable element FlyBase
2R	18290522	2R_18290522_SNP [dm3] 2R_22403017_SNP [dm6]	G	T	6.016e^-5	0.856	UPSTREAM babos EXON CR44760	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	8478911	3R_8478911_SNP [dm3] 3R_12653189_SNP [dm6]	G	A	6.018e^-5	0.856	DOWNSTREAM Dtg INTERGENIC
2L	2782693	2L_2782693_SNP [dm3] 2L_2782693_SNP [dm6]	A	G	6.021e^-5	0.856	UTR_3_PRIME Syt1
3R	5786004	3R_5786004_SNP [dm3] 3R_9960282_SNP [dm6]	C	T	6.053e^-5	0.856	INTRON Glut4EF
2L	9487588	2L_9487588_SNP [dm3] 2L_9487588_SNP [dm6]	A	G	6.065e^-5	0.856	INTERGENIC
3R	14616571	3R_14616571_SNP [dm3] 3R_18790849_SNP [dm6]	T	C	6.079e^-5	0.856	INTRON CG7720
3L	14370112	3L_14370112_SNP [dm3] 3L_14377012_SNP [dm6]	C	A	6.099e^-5	0.856	INTERGENIC
3R	14338279	3R_14338279_SNP [dm3] 3R_18512557_SNP [dm6]	G	T	6.109e^-5	0.856	INTRON fru
3L	4214680	3L_4214680_SNP [dm3] 3L_4214680_SNP [dm6]	G	A	6.120e^-5	0.856	UPSTREAM Cpr64Ad INTRON CG43367
2R	16427805	2R_16427805_SNP [dm3] 2R_20540300_SNP [dm6]	T	A	6.133e^-5	0.856	UPSTREAM CG13427 DOWNSTREAM CR44652 INTRON CG13428	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	17078601	2R_17078601_SNP [dm3] 2R_21191096_SNP [dm6]	A	G	6.148e^-5	0.856	NON_SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3547729	3L_3547729_SNP [dm3] 3L_3547729_SNP [dm6]	A	T	6.204e^-5	0.856	INTRON Eip63E
X	2430647	X_2430647_SNP [dm3] X_2536614_SNP [dm6]	G	C	6.239e^-5	0.856	INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA

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Phenotype distribution and association to known covariates

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Phenotype distribution and association to known covariates

QQplot

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GWAS results