DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.025e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.007689

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	9.2533	0.0098

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2561 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	5878383	3R_5878383_SNP [dm3] 3R_10052661_SNP [dm6]	G	T	4.774e^-8	0.055	UPSTREAM Npc2e DOWNSTREAM CR44192 INTRON Fancl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	5878395	3R_5878395_SNP [dm3] 3R_10052673_SNP [dm6]	A	G	5.907e^-8	0.055	UPSTREAM Npc2e DOWNSTREAM CR44192 INTRON Fancl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	5878522	3R_5878522_SNP [dm3] 3R_10052800_SNP [dm6]	T	C	3.547e^-7	0.197	NON_SYNONYMOUS_CODING Fancl UPSTREAM Npc2e DOWNSTREAM CR44192	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	4.213e^-7	0.197	EXON CR44950
3L	9715763	3L_9715763_SNP [dm3] 3L_9722663_SNP [dm6]	C	T	5.462e^-7	0.205	NON_SYNONYMOUS_CODING nbs UPSTREAM defl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	18159767	X_18159767_SNP [dm3] X_18265734_SNP [dm6]	G	A	1.927e^-6	0.516	INTERGENIC
3R	5785958	3R_5785958_SNP [dm3] 3R_9960236_SNP [dm6]	T	C	1.949e^-6	0.516	INTRON Glut4EF
2L	18858630	2L_18858630_DEL [dm3] 2L_18858630_DEL [dm6]	AATCGGCGACCAT...	A	2.550e^-6	0.516	UPSTREAM CG10602 DOWNSTREAM tup INTRON CG10602 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
X	15738163	X_15738163_SNP [dm3] X_15844130_SNP [dm6]	C	A	3.088e^-6	0.516	START_GAINED Aats-arg UTR_5_PRIME Aats-arg UPSTREAM CG8578	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3R	25091548	3R_25091548_SNP [dm3] 3R_29265826_SNP [dm6]	T	A	3.710e^-6	0.516	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9716431	3L_9716431_SNP [dm3] 3L_9723331_SNP [dm6]	A	C	3.739e^-6	0.516	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9716369	3L_9716369_SNP [dm3] 3L_9723269_SNP [dm6]	T	C	4.212e^-6	0.516	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3547729	3L_3547729_SNP [dm3] 3L_3547729_SNP [dm6]	A	T	4.401e^-6	0.516	INTRON Eip63E
2L	4290845	2L_4290845_SNP [dm3] 2L_4290845_SNP [dm6]	T	C	4.787e^-6	0.516	INTRON tutl
3L	9716322	3L_9716322_SNP [dm3] 3L_9723222_SNP [dm6]	A	T	4.930e^-6	0.516	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	15135061	X_15135061_SNP [dm3] X_15241028_SNP [dm6]	G	C	5.245e^-6	0.516	INTERGENIC
3L	7259205	3L_7259205_SNP [dm3] 3L_7266105_SNP [dm6]	C	A	5.398e^-6	0.516	DOWNSTREAM unc-13-4A INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	21909882	2L_21909882_SNP [dm3] 2L_21909882_SNP [dm6]	C	T	5.558e^-6	0.516	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	9715826	3L_9715826_SNP [dm3] 3L_9722726_SNP [dm6]	A	G	5.596e^-6	0.516	SYNONYMOUS_CODING nbs UPSTREAM defl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	9716377	3L_9716377_SNP [dm3] 3L_9723277_SNP [dm6]	T	C	6.002e^-6	0.516	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3547796	3L_3547796_SNP [dm3] 3L_3547796_SNP [dm6]	T	A	6.480e^-6	0.516	INTRON Eip63E
2L	22020494	2L_22020494_SNP [dm3] 2L_22020494_SNP [dm6]	A	G	7.016e^-6	0.516	DOWNSTREAM CR33987 INTRON tio	TF binding site mE1_TFBS_Trl
3R	5786004	3R_5786004_SNP [dm3] 3R_9960282_SNP [dm6]	C	T	7.118e^-6	0.516	INTRON Glut4EF
3R	5786011	3R_5786011_SNP [dm3] 3R_9960289_SNP [dm6]	T	A	7.468e^-6	0.516	INTRON Glut4EF
3L	9716420	3L_9716420_INS [dm3] 3L_9723320_INS [dm6]	G	TTA	7.545e^-6	0.516	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	5786016	3R_5786016_SNP [dm3] 3R_9960294_SNP [dm6]	C	T	7.686e^-6	0.516	INTRON Glut4EF
3L	7875188	3L_7875188_SNP [dm3] 3L_7882088_SNP [dm6]	A	T	7.987e^-6	0.516	INTRON CG32365
3L	9716375	3L_9716375_SNP [dm3] 3L_9723275_SNP [dm6]	G	T	8.048e^-6	0.516	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	16493446	2L_16493446_SNP [dm3] 2L_16493446_SNP [dm6]	C	T	8.377e^-6	0.516	INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	5838910	3R_5838910_SNP [dm3] 3R_10013188_SNP [dm6]	A	G	8.499e^-6	0.516	SYNONYMOUS_CODING Mical INTRON Mical
3L	3547681	3L_3547681_SNP [dm3] 3L_3547681_SNP [dm6]	C	G	8.532e^-6	0.516	INTRON Eip63E
2R	16961944	2R_16961944_DEL [dm3] 2R_21074439_DEL [dm6]	TAAATA	T	9.132e^-6	0.522	INTRON Treh
3L	9716422	3L_9716422_SNP [dm3] 3L_9723322_SNP [dm6]	C	T	9.196e^-6	0.522	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	2537242	3L_2537242_SNP [dm3] 3L_2537242_SNP [dm6]	A	G	9.654e^-6	0.532	UPSTREAM Spn INTRON Spn	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	9716433	3L_9716433_SNP [dm3] 3L_9723333_SNP [dm6]	A	T	1.003e^-5	0.537	UPSTREAM defl & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	7366142	3R_7366142_SNP [dm3] 3R_11540420_SNP [dm6]	T	G	1.117e^-5	0.553	INTRON dpr4
3R	5759037	3R_5759037_SNP [dm3] 3R_9933315_SNP [dm6]	C	T	1.120e^-5	0.553	INTRON Glut4EF
3R	5769824	3R_5769824_SNP [dm3] 3R_9944102_SNP [dm6]	G	A	1.128e^-5	0.553	UTR_3_PRIME Glut4EF INTRON Glut4EF
3R	5816807	3R_5816807_SNP [dm3] 3R_9991085_SNP [dm6]	A	G	1.151e^-5	0.553	UTR_3_PRIME Glut4EF
3R	5862855	3R_5862855_SNP [dm3] 3R_10037133_SNP [dm6]	G	A	1.216e^-5	0.57	INTRON Mical
3L	3547769	3L_3547769_SNP [dm3] 3L_3547769_SNP [dm6]	T	C	1.336e^-5	0.595	INTRON Eip63E
X	17078271	X_17078271_SNP [dm3] X_17184238_SNP [dm6]	T	C	1.353e^-5	0.595	UPSTREAM CR44026 INTRON baz
3L	1647129	3L_1647129_SNP [dm3] 3L_1647129_SNP [dm6]	A	G	1.405e^-5	0.595	NON_SYNONYMOUS_CODING CG17249 UPSTREAM Bro	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	14370112	3L_14370112_SNP [dm3] 3L_14377012_SNP [dm6]	C	A	1.470e^-5	0.595	INTERGENIC
3L	13549795	3L_13549795_SNP [dm3] 3L_13556695_SNP [dm6]	A	G	1.483e^-5	0.595	INTRON bru-3
3R	5877506	3R_5877506_SNP [dm3] 3R_10051784_SNP [dm6]	G	C	1.497e^-5	0.595	SYNONYMOUS_CODING Fancl DOWNSTREAM CG3925	TF binding site mE1_TFBS_cad
2L	8626603	2L_8626603_SNP [dm3] 2L_8626603_SNP [dm6]	G	C	1.522e^-5	0.595	INTRON Sema-1a
3R	5899901	3R_5899901_SNP [dm3] 3R_10074179_SNP [dm6]	A	C	1.535e^-5	0.595	SYNONYMOUS_CODING CG5361 DOWNSTREAM nerfin-2
3L	9716427	3L_9716427_SNP [dm3] 3L_9723327_SNP [dm6]	G	A	1.587e^-5	0.595	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	13551185	X_13551185_SNP [dm3] X_13657152_SNP [dm6]	A	C	1.666e^-5	0.595	INTRON NFAT
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	1.739e^-5	0.595	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	21802210	2L_21802210_SNP [dm3] 2L_21802210_SNP [dm6]	G	A	1.745e^-5	0.595	INTERGENIC
3R	10166354	3R_10166354_SNP [dm3] 3R_14340632_SNP [dm6]	G	A	1.789e^-5	0.595	INTRON NK7.1
3R	5720416	3R_5720416_SNP [dm3] 3R_9894694_SNP [dm6]	T	C	1.828e^-5	0.595	INTRON Glut4EF	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24152065	3R_24152065_SNP [dm3] 3R_28326343_SNP [dm6]	C	T	1.861e^-5	0.595	UPSTREAM larp INTRON larp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17693886	2R_17693886_SNP [dm3] 2R_21806381_SNP [dm6]	T	C	1.864e^-5	0.595	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	9716472	3L_9716472_SNP [dm3] 3L_9723372_SNP [dm6]	T	G	1.878e^-5	0.595	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	3967713	3R_3967713_SNP [dm3] 3R_8141991_SNP [dm6]	T	A	1.940e^-5	0.595	UPSTREAM tRNA:R2:84Fa INTERGENIC
3L	3547802	3L_3547802_SNP [dm3] 3L_3547802_SNP [dm6]	C	A	1.943e^-5	0.595	INTRON Eip63E
3L	13549850	3L_13549850_SNP [dm3] 3L_13556750_SNP [dm6]	A	G	1.969e^-5	0.595	INTRON bru-3
2R	6530491	2R_6530491_SNP [dm3] 2R_10642986_SNP [dm6]	C	A	1.993e^-5	0.595	INTRON Git	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	3966171	3R_3966171_SNP [dm3] 3R_8140449_SNP [dm6]	T	G	2.072e^-5	0.595	UPSTREAM tRNA:N5:84F & 2 others DOWNSTREAM tRNA:R2:84Fc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	892036	X_892036_SNP [dm3] X_998003_SNP [dm6]	T	A	2.120e^-5	0.595	INTERGENIC
2R	11575711	2R_11575711_SNP [dm3] 2R_15688206_SNP [dm6]	G	T	2.131e^-5	0.595	NON_SYNONYMOUS_CODING Cep89 SPLICE_SITE_REGION Cep89 DOWNSTREAM Ranbp11	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15141159	2L_15141159_SNP [dm3] 2L_15141159_SNP [dm6]	T	C	2.186e^-5	0.595	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	11858178	3R_11858178_SNP [dm3] 3R_16032456_SNP [dm6]	C	T	2.195e^-5	0.595	INTRON pnr	TF binding site mE1_TFBS_inv
2L	6850371	2L_6850371_SNP [dm3] 2L_6850371_SNP [dm6]	T	A	2.207e^-5	0.595	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17078601	2R_17078601_SNP [dm3] 2R_21191096_SNP [dm6]	A	G	2.214e^-5	0.595	NON_SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11856703	3R_11856703_SNP [dm3] 3R_16030981_SNP [dm6]	A	G	2.325e^-5	0.595	INTRON pnr
3L	5130681	3L_5130681_SNP [dm3] 3L_5137581_SNP [dm6]	G	A	2.329e^-5	0.595	SYNONYMOUS_CODING CG4611	TF binding site mE1_TFBS_chinmo
3L	9716331	3L_9716331_SNP [dm3] 3L_9723231_SNP [dm6]	C	T	2.340e^-5	0.595	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	3271914	3R_3271914_SNP [dm3] 3R_7446192_SNP [dm6]	G	T	2.354e^-5	0.595	INTERGENIC
2R	10654646	2R_10654646_SNP [dm3] 2R_14767141_SNP [dm6]	G	C	2.355e^-5	0.595	INTRON Spred
3L	7875197	3L_7875197_SNP [dm3] 3L_7882097_SNP [dm6]	T	A	2.363e^-5	0.595	INTRON CG32365
3L	7259208	3L_7259208_SNP [dm3] 3L_7266108_SNP [dm6]	T	C	2.408e^-5	0.595	DOWNSTREAM unc-13-4A INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15394423	3R_15394423_INS [dm3] 3R_19568701_INS [dm6]	A	AA	2.437e^-5	0.595	UPSTREAM Dys INTRON Dys	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	20906349	3L_20906349_SNP [dm3] 3L_20913249_SNP [dm6]	C	T	2.531e^-5	0.595	DOWNSTREAM CR45733 EXON CR43930
3L	14361935	3L_14361935_SNP [dm3] 3L_14368835_SNP [dm6]	T	C	2.542e^-5	0.595	DOWNSTREAM CG13481 & 1 other INTERGENIC
3R	5786538	3R_5786538_SNP [dm3] 3R_9960816_SNP [dm6]	G	A	2.543e^-5	0.595	INTRON Glut4EF	TF binding site mE1_TFBS_HSA
3R	16988813	3R_16988813_SNP [dm3] 3R_21163091_SNP [dm6]	C	G	2.562e^-5	0.595	UPSTREAM CG5810 INTRON SNF4Agamma
3L	9716464	3L_9716464_SNP [dm3] 3L_9723364_SNP [dm6]	A	T	2.675e^-5	0.595	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19279601	2R_19279601_SNP [dm3] 2R_23392078_SNP [dm6]	G	A	2.715e^-5	0.595	INTRON CG3530	TF binding site mE1_TFBS_chinmo
X	5615803	X_5615803_DEL [dm3] X_5721770_DEL [dm6]	ATTGTGCA	A	2.738e^-5	0.595	INTRON CG32758
X	5615812	X_5615812_SNP [dm3] X_5721779_SNP [dm6]	C	T	2.738e^-5	0.595	INTRON CG32758
3R	24151899	3R_24151899_SNP [dm3] 3R_28326177_SNP [dm6]	A	T	2.740e^-5	0.595	UTR_5_PRIME larp INTRON larp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	7723496	X_7723496_SNP [dm3] X_7829463_SNP [dm6]	T	C	2.966e^-5	0.595	INTRON CG1402
X	18363771	X_18363771_SNP [dm3] X_18469738_SNP [dm6]	C	T	2.978e^-5	0.595	INTRON CG32547
2R	12545372	2R_12545372_SNP [dm3] 2R_16657867_SNP [dm6]	T	A	2.981e^-5	0.595	INTRON Picot
3L	3547671	3L_3547671_SNP [dm3] 3L_3547671_SNP [dm6]	T	C	3.030e^-5	0.595	INTRON Eip63E
2L	21909898	2L_21909898_DEL [dm3] 2L_21909898_DEL [dm6]	CATAATAGGG	C	3.057e^-5	0.595	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	5882236	3R_5882236_SNP [dm3] 3R_10056514_SNP [dm6]	C	A	3.148e^-5	0.595	UPSTREAM Npc2d INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	5783874	3R_5783874_SNP [dm3] 3R_9958152_SNP [dm6]	C	A	3.178e^-5	0.595	INTRON Glut4EF
2L	12376192	2L_12376192_SNP [dm3] 2L_12376192_SNP [dm6]	A	G	3.188e^-5	0.595	INTRON bru-2
3R	5804593	3R_5804593_SNP [dm3] 3R_9978871_SNP [dm6]	C	G	3.208e^-5	0.595	INTRON Glut4EF	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	9716328	3L_9716328_SNP [dm3] 3L_9723228_SNP [dm6]	C	T	3.230e^-5	0.595	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19410022	2R_19410022_SNP [dm3] 2R_23522499_SNP [dm6]	A	G	3.232e^-5	0.595	INTRON RabX1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	8094483	X_8094483_SNP [dm3] X_8200450_SNP [dm6]	A	C	3.241e^-5	0.595	INTRON sdt
3R	13937696	3R_13937696_SNP [dm3] 3R_18111974_SNP [dm6]	A	G	3.311e^-5	0.595	INTRON sr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16763110	3R_16763110_SNP [dm3] 3R_20937388_SNP [dm6]	A	G	3.314e^-5	0.595	INTRON CG31191
2L	20710097	2L_20710097_SNP [dm3] 2L_20710097_SNP [dm6]	G	T	3.460e^-5	0.595	INTRON Hr38 EXON CR44187
3R	22624131	3R_22624131_SNP [dm3] 3R_26798409_SNP [dm6]	T	A	3.481e^-5	0.595	UPSTREAM Tl INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	3948645	3R_3948645_SNP [dm3] 3R_8122923_SNP [dm6]	C	T	3.484e^-5	0.595	NON_SYNONYMOUS_CODING CG7878 DOWNSTREAM puc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	18885261	2L_18885261_SNP [dm3] 2L_18885261_SNP [dm6]	C	G	3.510e^-5	0.595	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	5780934	3R_5780934_SNP [dm3] 3R_9955212_SNP [dm6]	G	A	3.545e^-5	0.595	UTR_3_PRIME Glut4EF INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl
3R	5827556	3R_5827556_SNP [dm3] 3R_10001834_SNP [dm6]	A	C	3.545e^-5	0.595	UTR_3_PRIME Mical UPSTREAM CG5359
3R	5864048	3R_5864048_SNP [dm3] 3R_10038326_SNP [dm6]	G	A	3.545e^-5	0.595	INTRON Mical
2R	19439532	2R_19439532_SNP [dm3] 2R_23552009_SNP [dm6]	T	A	3.594e^-5	0.595	UPSTREAM pita INTRON pita & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	16493517	2L_16493517_SNP [dm3] 2L_16493517_SNP [dm6]	T	G	3.642e^-5	0.595	INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	10434868	2L_10434868_SNP [dm3] 2L_10434868_SNP [dm6]	G	A	3.650e^-5	0.595	NON_SYNONYMOUS_CODING CG5337	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	9931768	X_9931768_SNP [dm3] X_10037735_SNP [dm6]	G	A	3.743e^-5	0.595	NON_SYNONYMOUS_CODING Cht6 INTRON Cht6
3R	5805763	3R_5805763_SNP [dm3] 3R_9980041_SNP [dm6]	G	T	3.772e^-5	0.595	INTRON Glut4EF	TF binding site mE1_TFBS_Trl
3R	5761007	3R_5761007_SNP [dm3] 3R_9935285_SNP [dm6]	T	A	3.791e^-5	0.595	INTRON Glut4EF
2L	22275835	2L_22275835_SNP [dm3] 2L_22275835_SNP [dm6]	C	T	3.801e^-5	0.595	INTERGENIC
3R	5846787	3R_5846787_SNP [dm3] 3R_10021065_SNP [dm6]	C	T	3.834e^-5	0.595	SYNONYMOUS_CODING Mical	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	20577491	2R_20577491_SNP [dm3] 2R_24689968_SNP [dm6]	T	C	3.855e^-5	0.595	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	5789331	3R_5789331_SNP [dm3] 3R_9963609_SNP [dm6]	C	A	3.863e^-5	0.595	INTRON Glut4EF
3R	5783879	3R_5783879_SNP [dm3] 3R_9958157_SNP [dm6]	A	G	3.942e^-5	0.595	INTRON Glut4EF
3R	12035632	3R_12035632_SNP [dm3] 3R_16209910_SNP [dm6]	G	A	3.952e^-5	0.595	UPSTREAM CR45639 & 1 other DOWNSTREAM CR45640 & 1 other INTERGENIC
3R	4331834	3R_4331834_SNP [dm3] 3R_8506112_SNP [dm6]	C	T	3.963e^-5	0.595	INTERGENIC	TF binding site mE1_TFBS_cad
3R	4952145	3R_4952145_SNP [dm3] 3R_9126423_SNP [dm6]	T	C	4.024e^-5	0.595	INTRON pum
3R	23519269	3R_23519269_SNP [dm3] 3R_27693547_SNP [dm6]	G	A	4.049e^-5	0.595	UPSTREAM CG43319 DOWNSTREAM CG12880 INTERGENIC
3R	5773679	3R_5773679_SNP [dm3] 3R_9947957_SNP [dm6]	G	T	4.060e^-5	0.595	INTRON Glut4EF
3R	5864108	3R_5864108_SNP [dm3] 3R_10038386_SNP [dm6]	C	T	4.060e^-5	0.595	INTRON Mical
3R	5878880	3R_5878880_SNP [dm3] 3R_10053158_SNP [dm6]	C	G	4.060e^-5	0.595	UPSTREAM Npc2e & 1 other EXON CR44192	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	4102826	3R_4102826_SNP [dm3] 3R_8277104_SNP [dm6]	A	G	4.084e^-5	0.595	UPSTREAM ato INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	5815474	3R_5815474_SNP [dm3] 3R_9989752_SNP [dm6]	G	A	4.187e^-5	0.595	UTR_3_PRIME Glut4EF DOWNSTREAM Glut4EF
3R	26864084	3R_26864084_SNP [dm3] 3R_31038362_SNP [dm6]	T	C	4.193e^-5	0.595	INTERGENIC
3L	3547740	3L_3547740_SNP [dm3] 3L_3547740_SNP [dm6]	A	C	4.282e^-5	0.595	INTRON Eip63E
3R	5773475	3R_5773475_SNP [dm3] 3R_9947753_SNP [dm6]	A	T	4.293e^-5	0.595	INTRON Glut4EF
2R	20347817	2R_20347817_SNP [dm3] 2R_24460294_SNP [dm6]	T	C	4.331e^-5	0.595	INTRON CG13579
3R	5823943	3R_5823943_SNP [dm3] 3R_9998221_SNP [dm6]	C	A	4.340e^-5	0.595	INTRON Spn85F
2R	9106776	2R_9106776_SNP [dm3] 2R_13219271_SNP [dm6]	C	T	4.356e^-5	0.595	UPSTREAM CG4630 DOWNSTREAM CG4646 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	3547801	3L_3547801_SNP [dm3] 3L_3547801_SNP [dm6]	T	C	4.389e^-5	0.595	INTRON Eip63E
3R	5813779	3R_5813779_SNP [dm3] 3R_9988057_SNP [dm6]	G	A	4.421e^-5	0.595	NON_SYNONYMOUS_CODING Glut4EF UTR_3_PRIME Glut4EF	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17711858	X_17711858_SNP [dm3] X_17817825_SNP [dm6]	G	A	4.477e^-5	0.595	INTERGENIC
3R	5783738	3R_5783738_SNP [dm3] 3R_9958016_SNP [dm6]	G	T	4.505e^-5	0.595	INTRON Glut4EF
2L	21901011	2L_21901011_SNP [dm3] 2L_21901011_SNP [dm6]	A	T	4.517e^-5	0.595	INTERGENIC
3L	5130756	3L_5130756_SNP [dm3] 3L_5137656_SNP [dm6]	G	T	4.557e^-5	0.595	SYNONYMOUS_CODING CG4611 DOWNSTREAM Prpk	TF binding site mE1_TFBS_chinmo
3L	15617045	3L_15617045_DEL [dm3] 3L_15623945_DEL [dm6]	TTTTAGT	T	4.589e^-5	0.595	UTR_3_PRIME CG7372 INTRON comm3	TF binding site mE1_TFBS_Trl
3R	12407796	3R_12407796_SNP [dm3] 3R_16582074_SNP [dm6]	G	C	4.591e^-5	0.595	INTRON Scp2
3L	10613409	3L_10613409_SNP [dm3] 3L_10620309_SNP [dm6]	C	T	4.612e^-5	0.595	INTERGENIC
3L	10613410	3L_10613410_SNP [dm3] 3L_10620310_SNP [dm6]	A	T	4.612e^-5	0.595	INTERGENIC
3L	12941884	3L_12941884_SNP [dm3] 3L_12948784_SNP [dm6]	G	A	4.622e^-5	0.595	INTERGENIC
3R	5783875	3R_5783875_SNP [dm3] 3R_9958153_SNP [dm6]	A	C	4.707e^-5	0.595	INTRON Glut4EF
2R	4907792	2R_4907792_SNP [dm3] 2R_9020287_SNP [dm6]	C	T	4.761e^-5	0.595	SPLICE_SITE_REGION CG8170 SYNONYMOUS_CODING CG8170	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21095999	2L_21095999_DEL [dm3] 2L_21095999_DEL [dm6]	ACA	A	4.839e^-5	0.595	UPSTREAM CG34136 INTRON CG12050
X	7725085	X_7725085_SNP [dm3] X_7831052_SNP [dm6]	C	G	4.847e^-5	0.595	INTRON CG1402
X	2430647	X_2430647_SNP [dm3] X_2536614_SNP [dm6]	G	C	4.945e^-5	0.595	INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	6247608	3R_6247608_INS [dm3] 3R_10421886_INS [dm6]	T	TGAGCCTCT	4.946e^-5	0.595	INTERGENIC
3L	4013806	3L_4013806_DEL [dm3] 3L_4013806_DEL [dm6]	TCACTAACACCCCTTT...	T	4.961e^-5	0.595	INTERGENIC
3R	24153972	3R_24153972_SNP [dm3] 3R_28328250_SNP [dm6]	A	C	5.104e^-5	0.595	UTR_5_PRIME larp INTRON larp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	18654956	2R_18654956_SNP [dm3] 2R_22767451_SNP [dm6]	G	A	5.146e^-5	0.595	INTRON CG42260
3L	20906326	3L_20906326_SNP [dm3] 3L_20913226_SNP [dm6]	G	A	5.149e^-5	0.595	DOWNSTREAM CR45733 EXON CR43930
3L	2698074	3L_2698074_SNP [dm3] 3L_2698074_SNP [dm6]	A	T	5.207e^-5	0.595	INTRON Fife
3R	6273873	3R_6273873_SNP [dm3] 3R_10448151_SNP [dm6]	T	A	5.225e^-5	0.595	INTERGENIC
2R	13533730	2R_13533730_SNP [dm3] 2R_17646225_SNP [dm6]	A	T	5.343e^-5	0.595	DOWNSTREAM CCHa1-R INTERGENIC
3L	1647215	3L_1647215_SNP [dm3] 3L_1647215_SNP [dm6]	T	C	5.398e^-5	0.595	SYNONYMOUS_CODING CG17249 UPSTREAM Bro	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	16610988	2R_16610988_SNP [dm3] 2R_20723483_SNP [dm6]	T	C	5.424e^-5	0.595	DOWNSTREAM CR44660 INTRON dpr
3R	13215096	3R_13215096_SNP [dm3] 3R_17389374_SNP [dm6]	C	T	5.431e^-5	0.595	UTR_3_PRIME lute INTRON Brf
3R	5789049	3R_5789049_SNP [dm3] 3R_9963327_SNP [dm6]	G	C	5.461e^-5	0.595	INTRON Glut4EF
3R	5831811	3R_5831811_SNP [dm3] 3R_10006089_SNP [dm6]	G	A	5.461e^-5	0.595	NON_SYNONYMOUS_CODING Mical UTR_3_PRIME Mical	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10613421	3L_10613421_SNP [dm3] 3L_10620321_SNP [dm6]	T	G	5.475e^-5	0.595	INTERGENIC
2R	11251034	2R_11251034_INS [dm3] 2R_15363529_INS [dm6]	A	ATA	5.490e^-5	0.595	INTRON unc-5
3L	3547726	3L_3547726_SNP [dm3] 3L_3547726_SNP [dm6]	T	C	5.509e^-5	0.595	INTRON Eip63E
2R	19409961	2R_19409961_SNP [dm3] 2R_23522438_SNP [dm6]	C	A	5.521e^-5	0.595	INTRON RabX1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	10950677	3R_10950677_SNP [dm3] 3R_15124955_SNP [dm6]	A	G	5.540e^-5	0.595	INTRON CG42788
3L	16509281	3L_16509281_SNP [dm3] 3L_16516181_SNP [dm6]	T	G	5.549e^-5	0.595	INTRON CG43373
3L	16509282	3L_16509282_SNP [dm3] 3L_16516182_SNP [dm6]	T	A	5.549e^-5	0.595	INTRON CG43373
3L	12941875	3L_12941875_SNP [dm3] 3L_12948775_SNP [dm6]	A	G	5.561e^-5	0.595	INTERGENIC
2L	10304811	2L_10304811_SNP [dm3] 2L_10304811_SNP [dm6]	T	A	5.562e^-5	0.595	UPSTREAM nmd INTRON CG5390	TF binding site mE1_TFBS_cad
2R	20329274	2R_20329274_SNP [dm3] 2R_24441751_SNP [dm6]	A	G	5.580e^-5	0.595	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6253276	3R_6253276_SNP [dm3] 3R_10427554_SNP [dm6]	G	A	5.586e^-5	0.595	INTERGENIC
3L	3547646	3L_3547646_SNP [dm3] 3L_3547646_SNP [dm6]	C	T	5.596e^-5	0.595	INTRON Eip63E
3L	20906902	3L_20906902_DEL [dm3] 3L_20913802_DEL [dm6]	TGGAACAAACGAAACTCCCA...	T	5.607e^-5	0.595	UPSTREAM CR43930 DOWNSTREAM CR45733 INTERGENIC
3R	4825613	3R_4825613_SNP [dm3] 3R_8999891_SNP [dm6]	G	A	5.639e^-5	0.595	INTRON CG31100
2L	18858626	2L_18858626_SNP [dm3] 2L_18858626_SNP [dm6]	A	G	5.661e^-5	0.595	UPSTREAM CG10602 DOWNSTREAM tup INTRON CG10602 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
2L	12111309	2L_12111309_SNP [dm3] 2L_12111309_SNP [dm6]	T	C	5.724e^-5	0.595	SYNONYMOUS_CODING Phae2 DOWNSTREAM Phae1	TF binding site mE1_TFBS_cad
2L	9485921	2L_9485921_SNP [dm3] 2L_9485921_SNP [dm6]	C	G	5.743e^-5	0.595	INTERGENIC
2L	22134657	2L_22134657_SNP [dm3] 2L_22134657_SNP [dm6]	G	A	5.755e^-5	0.595	UTR_5_PRIME CG42748 INTRON CG42748	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3R	13469273	3R_13469273_SNP [dm3] 3R_17643551_SNP [dm6]	T	C	5.757e^-5	0.595	INTRON CG43175
2R	16361612	2R_16361612_SNP [dm3] 2R_20474107_SNP [dm6]	A	G	5.789e^-5	0.595	INTRON CG12484
3R	8361618	3R_8361618_SNP [dm3] 3R_12535896_SNP [dm6]	G	C	5.833e^-5	0.595	INTRON Octbeta3R
3R	19575787	3R_19575787_SNP [dm3] 3R_23750065_SNP [dm6]	C	G	5.856e^-5	0.595	SYNONYMOUS_CODING Hmgcr DOWNSTREAM RanBP3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10613416	3L_10613416_SNP [dm3] 3L_10620316_SNP [dm6]	C	T	5.904e^-5	0.595	INTERGENIC
2R	11322522	2R_11322522_SNP [dm3] 2R_15435017_SNP [dm6]	C	A	5.912e^-5	0.595	INTRON CG43729	TF binding site mE1_TFBS_chinmo
2L	15150630	2L_15150630_SNP [dm3] 2L_15150630_SNP [dm6]	C	A	5.941e^-5	0.595	INTERGENIC
2R	9166701	2R_9166701_SNP [dm3] 2R_13279196_SNP [dm6]	G	A	5.990e^-5	0.595	INTRON Dh31-R
X	13433253	X_13433253_SNP [dm3] X_13539220_SNP [dm6]	G	A	6.042e^-5	0.595	INTERGENIC
3L	21376144	3L_21376144_SNP [dm3] 3L_21383044_SNP [dm6]	G	T	6.043e^-5	0.595	UTR_5_PRIME rgn
2L	22020382	2L_22020382_SNP [dm3] 2L_22020382_SNP [dm6]	G	T	6.051e^-5	0.595	DOWNSTREAM CR33987 INTRON tio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	8136797	2R_8136797_SNP [dm3] 2R_12249292_SNP [dm6]	G	A	6.059e^-5	0.595	INTERGENIC
3R	5882047	3R_5882047_SNP [dm3] 3R_10056325_SNP [dm6]	T	C	6.100e^-5	0.596	UPSTREAM Npc2d INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	21929216	2L_21929216_SNP [dm3] 2L_21929216_SNP [dm6]	A	G	6.157e^-5	0.597	INTERGENIC
2L	6850382	2L_6850382_SNP [dm3] 2L_6850382_SNP [dm6]	C	T	6.204e^-5	0.597	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	4861376	3R_4861376_SNP [dm3] 3R_9035654_SNP [dm6]	C	T	6.212e^-5	0.597	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	5902449	3R_5902449_SNP [dm3] 3R_10076727_SNP [dm6]	T	G	6.409e^-5	0.613	INTERGENIC
3R	5811260	3R_5811260_SNP [dm3] 3R_9985538_SNP [dm6]	C	T	6.444e^-5	0.613	NON_SYNONYMOUS_CODING Art4 INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	11665292	X_11665292_SNP [dm3] X_11771259_SNP [dm6]	T	G	6.536e^-5	0.619	NON_SYNONYMOUS_CODING dy	TF binding site mE1_TFBS_chinmo
3L	17257543	3L_17257543_SNP [dm3] 3L_17264443_SNP [dm6]	C	G	6.604e^-5	0.622	START_GAINED CG13723 UTR_5_PRIME CG13723 DOWNSTREAM CR43870
2R	17956374	2R_17956374_SNP [dm3] 2R_22068869_SNP [dm6]	G	T	6.637e^-5	0.622	SYNONYMOUS_CODING Snp DOWNSTREAM CG44249 & 1 other
X	11098165	X_11098165_DEL [dm3] X_11204132_DEL [dm6]	TAACAGCAAAACAGAAAGT...	T	6.666e^-5	0.622	INTERGENIC
3R	21876370	3R_21876370_SNP [dm3] 3R_26050648_SNP [dm6]	T	G	6.736e^-5	0.622	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2698076	3L_2698076_SNP [dm3] 3L_2698076_SNP [dm6]	T	C	6.742e^-5	0.622	INTRON Fife
2L	21851919	2L_21851919_INS [dm3] 2L_21851919_INS [dm6]	T	TTCT	6.792e^-5	0.622	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	3948535	3R_3948535_SNP [dm3] 3R_8122813_SNP [dm6]	T	G	6.811e^-5	0.622	UTR_5_PRIME CG7878 DOWNSTREAM puc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	18531737	3L_18531737_SNP [dm3] 3L_18538637_SNP [dm6]	A	G	6.890e^-5	0.622	INTERGENIC
2R	19271591	2R_19271591_INS [dm3] 2R_23384068_INS [dm6]	AT	GAAGA	6.895e^-5	0.622	UPSTREAM CG13551 DOWNSTREAM CG30414 EXON CR44784
3R	5759023	3R_5759023_SNP [dm3] 3R_9933301_SNP [dm6]	C	G	6.955e^-5	0.622	INTRON Glut4EF
2L	19754910	2L_19754910_SNP [dm3] 2L_19754910_SNP [dm6]	G	A	7.091e^-5	0.622	INTRON CG10631	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5862068	3R_5862068_SNP [dm3] 3R_10036346_SNP [dm6]	A	G	7.096e^-5	0.622	INTRON Mical
X	18397487	X_18397487_INS [dm3] X_18503454_INS [dm6]	T	TGCTACT	7.107e^-5	0.622	CODON_INSERTION Wnt5	TF binding site mE1_TFBS_cad
2R	10837352	2R_10837352_SNP [dm3] 2R_14949847_SNP [dm6]	A	G	7.127e^-5	0.622	UPSTREAM aPKC INTRON aPKC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	4823138	3R_4823138_DEL [dm3] 3R_8997416_DEL [dm6]	ACAATTGACATAAACAAACT...	A	7.133e^-5	0.622	UPSTREAM CG11977 INTRON CG31100
X	5705204	X_5705204_DEL [dm3] X_5811171_DEL [dm6]	TATCTTCCCT	T	7.188e^-5	0.622	DOWNSTREAM CR45529 INTERGENIC
3R	3974608	3R_3974608_SNP [dm3] 3R_8148886_SNP [dm6]	C	A	7.201e^-5	0.622	UTR_3_PRIME grn
2R	10578635	2R_10578635_SNP [dm3] 2R_14691130_SNP [dm6]	T	C	7.256e^-5	0.622	INTRON mspo
3R	8349902	3R_8349902_SNP [dm3] 3R_12524180_SNP [dm6]	A	T	7.263e^-5	0.622	INTRON Octbeta3R
3L	2543444	3L_2543444_SNP [dm3] 3L_2543444_SNP [dm6]	G	T	7.307e^-5	0.622	INTRON Spn	TF binding site mE1_TFBS_cad
3R	19741310	3R_19741310_SNP [dm3] 3R_23915588_SNP [dm6]	G	A	7.343e^-5	0.622	INTRON sba
2R	17096718	2R_17096718_SNP [dm3] 2R_21209213_SNP [dm6]	C	G	7.388e^-5	0.622	UTR_3_PRIME Glycogenin INTRON CG44245 & 1 other
2L	21901118	2L_21901118_SNP [dm3] 2L_21901118_SNP [dm6]	A	G	7.428e^-5	0.622	INTERGENIC
2R	4921687	2R_4921687_SNP [dm3] 2R_9034182_SNP [dm6]	A	T	7.449e^-5	0.622	INTERGENIC
2R	13400409	2R_13400409_SNP [dm3] 2R_17512904_SNP [dm6]	G	A	7.492e^-5	0.622	SYNONYMOUS_CODING CG4847	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19276650	2R_19276650_SNP [dm3] 2R_23389127_SNP [dm6]	G	A	7.495e^-5	0.622	UTR_3_PRIME CG3530 DOWNSTREAM eIF2B-delta	TF binding site mE1_TFBS_chinmo
2R	12099557	2R_12099557_SNP [dm3] 2R_16212052_SNP [dm6]	T	C	7.511e^-5	0.622	INTRON mrj
2R	19409956	2R_19409956_DEL [dm3] 2R_23522433_DEL [dm6]	GA	G	7.543e^-5	0.622	INTRON RabX1	TF binding site BDTNP1_TFBS_dl
2L	9112617	2L_9112617_SNP [dm3] 2L_9112617_SNP [dm6]	C	T	7.557e^-5	0.622	SYNONYMOUS_CODING Or30a
3R	5867343	3R_5867343_SNP [dm3] 3R_10041621_SNP [dm6]	T	C	7.568e^-5	0.622	INTRON Mical
3L	13967250	3L_13967250_SNP [dm3] 3L_13974150_SNP [dm6]	A	G	7.854e^-5	0.63	UTR_5_PRIME Hsc70-1 UPSTREAM Hsc70-1 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20610902	3R_20610902_SNP [dm3] 3R_24785180_SNP [dm6]	A	G	7.860e^-5	0.63	UTR_3_PRIME CG5805 DOWNSTREAM CG42331	TF binding site mE1_TFBS_cad
X	3559892	X_3559892_SNP [dm3] X_3665859_SNP [dm6]	C	T	7.866e^-5	0.63	UTR_3_PRIME AstA-R1
3L	16992968	3L_16992968_SNP [dm3] 3L_16999868_SNP [dm6]	A	G	7.929e^-5	0.63	SYNONYMOUS_CODING CG3764	TF binding site mE1_TFBS_chinmo
3R	9165842	3R_9165842_SNP [dm3] 3R_13340120_SNP [dm6]	T	A	7.948e^-5	0.63	UTR_5_PRIME PK2-R1
2R	7107070	2R_7107070_SNP [dm3] 2R_11219565_SNP [dm6]	T	C	7.967e^-5	0.63	UTR_5_PRIME Syx6 UPSTREAM Syx6 & 1 other INTRON CG9084	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	4143499	2L_4143499_SNP [dm3] 2L_4143499_SNP [dm6]	T	C	8.004e^-5	0.63	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6269871	3R_6269871_SNP [dm3] 3R_10444149_SNP [dm6]	C	G	8.043e^-5	0.63	INTERGENIC
3L	7875165	3L_7875165_SNP [dm3] 3L_7882065_SNP [dm6]	C	G	8.087e^-5	0.63	INTRON CG32365
3R	21675748	3R_21675748_SNP [dm3] 3R_25850026_SNP [dm6]	A	C	8.104e^-5	0.63	DOWNSTREAM CG14545 INTERGENIC
3R	17541473	3R_17541473_SNP [dm3] 3R_21715751_SNP [dm6]	G	T	8.167e^-5	0.63	INTRON CG31176
2R	9103655	2R_9103655_SNP [dm3] 2R_13216150_SNP [dm6]	G	A	8.174e^-5	0.63	DOWNSTREAM CG4627 INTRON CG4630
2R	18231495	2R_18231495_SNP [dm3] 2R_22343990_SNP [dm6]	T	C	8.185e^-5	0.63	INTRON Liprin-gamma
3L	10861566	3L_10861566_SNP [dm3] 3L_10868466_SNP [dm6]	G	T	8.195e^-5	0.63	INTRON tna
3R	24616252	3R_24616252_SNP [dm3] 3R_28790530_SNP [dm6]	T	A	8.280e^-5	0.63	SYNONYMOUS_CODING intr DOWNSTREAM CG34295
3L	16230974	3L_16230974_SNP [dm3] 3L_16237874_SNP [dm6]	C	T	8.306e^-5	0.63	SYNONYMOUS_CODING l_3_72Dr DOWNSTREAM l_3_72Dp
2R	16361176	2R_16361176_SNP [dm3] 2R_20473671_SNP [dm6]	A	G	8.325e^-5	0.63	INTRON CG12484
2L	6644821	2L_6644821_SNP [dm3] 2L_6644821_SNP [dm6]	T	C	8.326e^-5	0.63	INTRON CG31635	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	11857221	3R_11857221_SNP [dm3] 3R_16031499_SNP [dm6]	G	T	8.436e^-5	0.63	INTRON pnr
2L	21901015	2L_21901015_SNP [dm3] 2L_21901015_SNP [dm6]	C	G	8.599e^-5	0.63	INTERGENIC
3L	21600167	3L_21600167_SNP [dm3] 3L_21607067_SNP [dm6]	G	A	8.733e^-5	0.63	INTRON TfAP-2
3R	21675747	3R_21675747_SNP [dm3] 3R_25850025_SNP [dm6]	A	C	8.742e^-5	0.63	DOWNSTREAM CG14545 INTERGENIC
2R	19273310	2R_19273310_SNP [dm3] 2R_23385787_SNP [dm6]	T	A	8.757e^-5	0.63	UTR_3_PRIME CG30415 UPSTREAM CG30414 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6273863	3R_6273863_SNP [dm3] 3R_10448141_SNP [dm6]	T	A	8.772e^-5	0.63	INTERGENIC
3R	13163039	3R_13163039_DEL [dm3] 3R_17337317_DEL [dm6]	CTAAATGAGCCGTTGGC...	C	8.806e^-5	0.63	INTRON beat-IIa
3L	2707769	3L_2707769_SNP [dm3] 3L_2707769_SNP [dm6]	A	G	8.806e^-5	0.63	INTRON Fife
3L	2707771	3L_2707771_SNP [dm3] 3L_2707771_SNP [dm6]	T	C	8.806e^-5	0.63	INTRON Fife
3R	6259266	3R_6259266_SNP [dm3] 3R_10433544_SNP [dm6]	C	T	8.816e^-5	0.63	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4805913	3R_4805913_DEL [dm3] 3R_8980191_DEL [dm6]	TT	T	8.856e^-5	0.63	UPSTREAM CAHbeta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	16923351	2R_16923351_DEL [dm3] 2R_21035846_DEL [dm6]	TT	T	8.886e^-5	0.63	INTERGENIC
3R	20898978	3R_20898978_SNP [dm3] 3R_25073256_SNP [dm6]	C	G	8.914e^-5	0.63	SYNONYMOUS_CODING CG9996 DOWNSTREAM CG11836
X	21838185	X_21838185_SNP [dm3] X_22436350_SNP [dm6]	A	G	8.918e^-5	0.63	INTERGENIC
2L	3500278	2L_3500278_SNP [dm3] 2L_3500278_SNP [dm6]	A	G	8.937e^-5	0.63	SYNONYMOUS_CODING tim DOWNSTREAM tim
2R	11567861	2R_11567861_SNP [dm3] 2R_15680356_SNP [dm6]	C	A	9.011e^-5	0.63	UPSTREAM CG30091 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	3100145	3L_3100145_SNP [dm3] 3L_3100145_SNP [dm6]	T	C	9.073e^-5	0.63	INTRON Cht7
X	8864790	X_8864790_SNP [dm3] X_8970757_SNP [dm6]	C	G	9.106e^-5	0.63	INTRON rdgA
3L	1646534	3L_1646534_SNP [dm3] 3L_1646534_SNP [dm6]	A	G	9.119e^-5	0.63	SYNONYMOUS_CODING CG17249 DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15386264	2L_15386264_MNP [dm3] 2L_15386264_MNP [dm6]	AGA	TCT	9.148e^-5	0.63	INTERGENIC
2L	15386268	2L_15386268_MNP [dm3] 2L_15386268_MNP [dm6]	AAC	TTT	9.148e^-5	0.63	INTERGENIC
2L	15386261	2L_15386261_INS [dm3] 2L_15386261_INS [dm6]	T	TAG	9.149e^-5	0.63	INTERGENIC
2R	10758397	2R_10758397_DEL [dm3] 2R_14870892_DEL [dm6]	TC	T	9.171e^-5	0.63	UPSTREAM Cyp6a22 INTRON Inr-a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	14698666	2R_14698666_SNP [dm3] 2R_18811161_SNP [dm6]	C	T	9.185e^-5	0.63	INTRON CG15096
X	10543723	X_10543723_SNP [dm3] X_10649690_SNP [dm6]	G	C	9.197e^-5	0.63	INTRON X11Lbeta
3R	4266799	3R_4266799_SNP [dm3] 3R_8441077_SNP [dm6]	G	T	9.227e^-5	0.63	INTRON CG45263
2R	19564911	2R_19564911_SNP [dm3] 2R_23677388_SNP [dm6]	T	A	9.251e^-5	0.63	INTRON Pde8	TF binding site mE1_TFBS_cad
3L	3547744	3L_3547744_SNP [dm3] 3L_3547744_SNP [dm6]	A	T	9.384e^-5	0.63	INTRON Eip63E
X	1193718	X_1193718_SNP [dm3] X_1299685_SNP [dm6]	G	A	9.405e^-5	0.63	INTRON DAAM	TF binding site mE1_TFBS_chinmo
2R	16610990	2R_16610990_SNP [dm3] 2R_20723485_SNP [dm6]	C	A	9.415e^-5	0.63	DOWNSTREAM CR44660 INTRON dpr
2L	10670374	2L_10670374_SNP [dm3] 2L_10670374_SNP [dm6]	G	A	9.422e^-5	0.63	INTRON CG31871
3L	16456527	3L_16456527_SNP [dm3] 3L_16463427_SNP [dm6]	T	G	9.427e^-5	0.63	INTRON CG33158	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13583841	3R_13583841_INS [dm3] 3R_17758119_INS [dm6]	T	TT	9.445e^-5	0.63	INTRON TyrR
3R	4363255	3R_4363255_SNP [dm3] 3R_8537533_SNP [dm6]	A	G	9.461e^-5	0.63	INTERGENIC
X	3559908	X_3559908_SNP [dm3] X_3665875_SNP [dm6]	T	A	9.525e^-5	0.63	UTR_3_PRIME AstA-R1
2R	5081658	2R_5081658_SNP [dm3] 2R_9194153_SNP [dm6]	A	G	9.547e^-5	0.63	INTERGENIC
2R	12022205	2R_12022205_SNP [dm3] 2R_16134700_SNP [dm6]	T	A	9.553e^-5	0.63	INTRON spin
3L	10424471	3L_10424471_SNP [dm3] 3L_10431371_SNP [dm6]	T	A	9.553e^-5	0.63	NON_SYNONYMOUS_CODING Ir67b
2R	18660370	2R_18660370_SNP [dm3] 2R_22772865_SNP [dm6]	T	A	9.576e^-5	0.63	INTRON CG42260
3R	25283460	3R_25283460_SNP [dm3] 3R_29457738_SNP [dm6]	A	G	9.606e^-5	0.63	INTRON Ptp99A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	21652058	3L_21652058_SNP [dm3] 3L_21658958_SNP [dm6]	G	A	9.667e^-5	0.631	NON_SYNONYMOUS_CODING CG43980 INTRON CG43980	TF binding site mE1_TFBS_chinmo
2R	18362738	2R_18362738_SNP [dm3] 2R_22475233_SNP [dm6]	T	C	9.753e^-5	0.635	SYNONYMOUS_CODING CG45062	TF binding site mE1_TFBS_chinmo
3L	2536862	3L_2536862_SNP [dm3] 3L_2536862_SNP [dm6]	A	C	9.871e^-5	0.638	UPSTREAM Spn INTRON Spn	TF binding site mE1_TFBS_Trl
3L	21600286	3L_21600286_INS [dm3] 3L_21607186_INS [dm6]	C	CACCTATGTTC...	9.917e^-5	0.638	UPSTREAM TfAP-2 INTRON TfAP-2
3R	14548068	3R_14548068_SNP [dm3] 3R_18722346_SNP [dm6]	G	A	9.997e^-5	0.638	SYNONYMOUS_CODING CG34283 INTRON Cha	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	4233744	2R_4233744_SNP [dm3] 2R_8346239_SNP [dm6]	T	C	1.005e^-4	0.638	INTRON pdm3	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	4233746	2R_4233746_INS [dm3] 2R_8346241_INS [dm6]	T	TTATATCTTATTAT...	1.005e^-4	0.638	INTRON pdm3	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	1462094	3L_1462094_SNP [dm3] 3L_1462094_SNP [dm6]	C	A	1.006e^-4	0.638	INTRON Ptp61F EXON CR44842	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	14293569	X_14293569_SNP [dm3] X_14399536_SNP [dm6]	A	C	1.008e^-4	0.638	INTRON dpr8
2R	8136809	2R_8136809_SNP [dm3] 2R_12249304_SNP [dm6]	G	T	1.012e^-4	0.638	INTERGENIC
3R	23441415	3R_23441415_SNP [dm3] 3R_27615693_SNP [dm6]	A	C	1.012e^-4	0.638	INTRON Tusp
3L	4053630	3L_4053630_SNP [dm3] 3L_4053630_SNP [dm6]	T	C	1.014e^-4	0.638	INTRON CG1136
2R	18362869	2R_18362869_SNP [dm3] 2R_22475364_SNP [dm6]	G	A	1.017e^-4	0.638	SYNONYMOUS_CODING CG45062	TF binding site mE1_TFBS_chinmo
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	1.022e^-4	0.638	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
3R	20287397	3R_20287397_SNP [dm3] 3R_24461675_SNP [dm6]	G	T	1.025e^-4	0.638	INTERGENIC
3L	10610526	3L_10610526_SNP [dm3] 3L_10617426_SNP [dm6]	C	G	1.044e^-4	0.646	INTERGENIC
2L	6644839	2L_6644839_SNP [dm3] 2L_6644839_SNP [dm6]	T	C	1.049e^-4	0.646	INTRON CG31635	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	21384805	3L_21384805_DEL [dm3] 3L_21391705_DEL [dm6]	GGG	G	1.051e^-4	0.646	INTRON rgn
2R	12138452	2R_12138452_SNP [dm3] 2R_16250947_SNP [dm6]	C	A	1.054e^-4	0.646	INTRON CngA
3L	10613354	3L_10613354_SNP [dm3] 3L_10620254_SNP [dm6]	T	A	1.055e^-4	0.646	INTERGENIC
3L	13549586	3L_13549586_SNP [dm3] 3L_13556486_SNP [dm6]	C	A	1.063e^-4	0.647	INTRON bru-3
2L	2415341	2L_2415341_SNP [dm3] 2L_2415341_SNP [dm6]	T	C	1.069e^-4	0.647	UPSTREAM CG18641 DOWNSTREAM CG31948 INTERGENIC
3L	3547722	3L_3547722_SNP [dm3] 3L_3547722_SNP [dm6]	T	C	1.072e^-4	0.647	INTRON Eip63E
3R	11857220	3R_11857220_SNP [dm3] 3R_16031498_SNP [dm6]	C	T	1.072e^-4	0.647	INTRON pnr
3R	13130663	3R_13130663_SNP [dm3] 3R_17304941_SNP [dm6]	C	G	1.073e^-4	0.647	INTERGENIC
3R	7331866	3R_7331866_SNP [dm3] 3R_11506144_SNP [dm6]	C	T	1.081e^-4	0.65	DOWNSTREAM dpr5 INTERGENIC
3R	22074497	3R_22074497_SNP [dm3] 3R_26248775_SNP [dm6]	G	A	1.087e^-4	0.651	INTRON CR42745	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	3269072	3R_3269072_DEL [dm3] 3R_7443350_DEL [dm6]	TATCAT	T	1.101e^-4	0.652	INTERGENIC
2R	19438651	2R_19438651_SNP [dm3] 2R_23551128_SNP [dm6]	A	C	1.102e^-4	0.652	UTR_5_PRIME pita UPSTREAM Dcp-1 INTRON pita	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	23295043	3L_23295043_SNP [dm3] 3L_23301943_SNP [dm6]	T	A	1.102e^-4	0.652	INTERGENIC	transposable element FlyBase
2L	18885333	2L_18885333_SNP [dm3] 2L_18885333_SNP [dm6]	C	G	1.105e^-4	0.652	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	19503221	3R_19503221_SNP [dm3] 3R_23677499_SNP [dm6]	G	C	1.109e^-4	0.652	SYNONYMOUS_CODING CG13822	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3547752	3L_3547752_INS [dm3] 3L_3547752_INS [dm6]	A	AAA	1.110e^-4	0.652	INTRON Eip63E
2L	8246362	2L_8246362_SNP [dm3] 2L_8246362_SNP [dm6]	A	C	1.115e^-4	0.652	INTRON CG8086
3L	1446773	3L_1446773_INS [dm3] 3L_1446773_INS [dm6]	T	TT	1.116e^-4	0.652	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6269451	3R_6269451_SNP [dm3] 3R_10443729_SNP [dm6]	G	T	1.123e^-4	0.653	INTERGENIC
3R	13171560	3R_13171560_SNP [dm3] 3R_17345838_SNP [dm6]	G	A	1.132e^-4	0.653	UTR_5_PRIME beat-IIa
3R	8380671	3R_8380671_SNP [dm3] 3R_12554949_SNP [dm6]	G	A	1.135e^-4	0.653	INTRON Octbeta2R
3L	2291041	3L_2291041_SNP [dm3] 3L_2291041_SNP [dm6]	C	G	1.137e^-4	0.653	INTRON MsR2
2R	19438275	2R_19438275_SNP [dm3] 2R_23550752_SNP [dm6]	C	T	1.139e^-4	0.653	SYNONYMOUS_CODING pita UPSTREAM Dcp-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2R	7400335	2R_7400335_INS [dm3] 2R_11512830_INS [dm6]	G	GGTT	1.141e^-4	0.653	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10861565	3L_10861565_SNP [dm3] 3L_10868465_SNP [dm6]	A	G	1.151e^-4	0.653	INTRON tna
3L	9956369	3L_9956369_SNP [dm3] 3L_9963269_SNP [dm6]	A	T	1.155e^-4	0.653	INTRON CG34356
2R	12138424	2R_12138424_SNP [dm3] 2R_16250919_SNP [dm6]	A	G	1.158e^-4	0.653	INTRON CngA
3R	25136442	3R_25136442_SNP [dm3] 3R_29310720_SNP [dm6]	A	G	1.163e^-4	0.653	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	9103634	2R_9103634_SNP [dm3] 2R_13216129_SNP [dm6]	C	T	1.167e^-4	0.653	DOWNSTREAM CG4627 INTRON CG4630
3R	4957854	3R_4957854_SNP [dm3] 3R_9132132_SNP [dm6]	C	T	1.169e^-4	0.653	INTRON pum	TF binding site mE1_TFBS_cad
3L	20928276	3L_20928276_SNP [dm3] 3L_20935176_SNP [dm6]	T	C	1.172e^-4	0.653	INTRON fng
3L	21675464	3L_21675464_SNP [dm3] 3L_21682364_SNP [dm6]	G	T	1.176e^-4	0.653	NON_SYNONYMOUS_CODING CG11248 DOWNSTREAM Sfp78E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13699184	2L_13699184_DEL [dm3] 2L_13699184_DEL [dm6]	GG	G	1.179e^-4	0.653	INTRON CG31814	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	4960073	3R_4960073_SNP [dm3] 3R_9134351_SNP [dm6]	C	T	1.180e^-4	0.653	INTRON pum
3R	21876295	3R_21876295_SNP [dm3] 3R_26050573_SNP [dm6]	T	C	1.182e^-4	0.653	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5791300	3R_5791300_SNP [dm3] 3R_9965578_SNP [dm6]	T	C	1.182e^-4	0.653	INTRON Glut4EF	TF binding site mE1_TFBS_chinmo
2R	12545373	2R_12545373_SNP [dm3] 2R_16657868_SNP [dm6]	A	T	1.184e^-4	0.653	INTRON Picot
2R	9103409	2R_9103409_SNP [dm3] 2R_13215904_SNP [dm6]	G	A	1.203e^-4	0.654	SYNONYMOUS_CODING CG4630 DOWNSTREAM CG4627
2L	2645879	2L_2645879_DEL [dm3] 2L_2645879_DEL [dm6]	AAGGAAGTC	T	1.204e^-4	0.654	UPSTREAM CR43852 DOWNSTREAM CG9962 INTERGENIC
3R	5872905	3R_5872905_SNP [dm3] 3R_10047183_SNP [dm6]	G	A	1.206e^-4	0.654	NON_SYNONYMOUS_CODING mtTFB2 DOWNSTREAM CG12811
2R	19437549	2R_19437549_SNP [dm3] 2R_23550026_SNP [dm6]	T	C	1.206e^-4	0.654	SYNONYMOUS_CODING pita	TF binding site mE1_TFBS_chinmo
2R	12138163	2R_12138163_SNP [dm3] 2R_16250658_SNP [dm6]	C	A	1.206e^-4	0.654	UPSTREAM CngA INTRON CngA
2L	15307422	2L_15307422_SNP [dm3] 2L_15307422_SNP [dm6]	G	C	1.208e^-4	0.654	INTERGENIC
2L	11010499	2L_11010499_SNP [dm3] 2L_11010499_SNP [dm6]	C	T	1.211e^-4	0.654	SYNONYMOUS_CODING Art8 UTR_3_PRIME Nup154 UPSTREAM dUTPase DOWNSTREAM Nup154	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	7812923	3L_7812923_SNP [dm3] 3L_7819823_SNP [dm6]	C	A	1.219e^-4	0.655	INTRON Pdp1
3R	5883615	3R_5883615_SNP [dm3] 3R_10057893_SNP [dm6]	C	A	1.220e^-4	0.655	INTERGENIC
3R	5778207	3R_5778207_SNP [dm3] 3R_9952485_SNP [dm6]	T	C	1.226e^-4	0.656	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl
3L	2380965	3L_2380965_SNP [dm3] 3L_2380965_SNP [dm6]	A	G	1.229e^-4	0.656	INTRON CG45186
3L	15770547	3L_15770547_SNP [dm3] 3L_15777447_SNP [dm6]	G	T	1.235e^-4	0.656	INTERGENIC
3L	14356997	3L_14356997_SNP [dm3] 3L_14363897_SNP [dm6]	T	A	1.236e^-4	0.656	INTRON fz
2R	14123539	2R_14123539_SNP [dm3] 2R_18236034_SNP [dm6]	T	A	1.238e^-4	0.656	UTR_3_PRIME fj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	7282901	3R_7282901_SNP [dm3] 3R_11457179_SNP [dm6]	T	C	1.248e^-4	0.657	INTRON CG17230 & 1 other
2L	21886387	2L_21886387_SNP [dm3] 2L_21886387_SNP [dm6]	C	G	1.253e^-4	0.657	INTERGENIC
X	11177295	X_11177295_SNP [dm3] X_11283262_SNP [dm6]	C	T	1.254e^-4	0.657	INTRON CG44422
2R	16856340	2R_16856340_SNP [dm3] 2R_20968835_SNP [dm6]	A	C	1.258e^-4	0.657	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	22127441	2L_22127441_SNP [dm3] 2L_22127441_SNP [dm6]	T	A	1.259e^-4	0.657	UTR_3_PRIME CycK DOWNSTREAM CG3651 & 1 other
2L	21916487	2L_21916487_SNP [dm3] 2L_21916487_SNP [dm6]	T	A	1.267e^-4	0.657	NON_SYNONYMOUS_CODING CG11634
2R	18452869	2R_18452869_SNP [dm3] 2R_22565364_SNP [dm6]	A	T	1.268e^-4	0.657	INTRON dnr1	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	6296073	3R_6296073_INS [dm3] 3R_10470351_INS [dm6]	A	ACTATAAGTCAATC...	1.268e^-4	0.657	INTERGENIC
3R	25154376	3R_25154376_SNP [dm3] 3R_29328654_SNP [dm6]	G	C	1.284e^-4	0.663	INTERGENIC
3R	13469257	3R_13469257_SNP [dm3] 3R_17643535_SNP [dm6]	G	A	1.293e^-4	0.664	INTRON CG43175
X	18123827	X_18123827_SNP [dm3] X_18229794_SNP [dm6]	G	T	1.297e^-4	0.664	INTERGENIC
X	14345811	X_14345811_SNP [dm3] X_14451778_SNP [dm6]	C	A	1.298e^-4	0.664	INTRON dpr8
2L	20812657	2L_20812657_SNP [dm3] 2L_20812657_SNP [dm6]	T	C	1.301e^-4	0.664	INTRON CG9328
2L	15081057	2L_15081057_SNP [dm3] 2L_15081057_SNP [dm6]	G	T	1.305e^-4	0.664	INTRON CG15270
2L	16798112	2L_16798112_SNP [dm3] 2L_16798112_SNP [dm6]	A	G	1.312e^-4	0.664	NON_SYNONYMOUS_CODING Ugt36Bb UPSTREAM Ugt36Bc
3R	14545090	3R_14545090_SNP [dm3] 3R_18719368_SNP [dm6]	T	A	1.315e^-4	0.664	DOWNSTREAM VAChT INTRON Cha
2L	9644998	2L_9644998_SNP [dm3] 2L_9644998_SNP [dm6]	T	C	1.326e^-4	0.664	SYNONYMOUS_CODING Apoltp
X	7585157	X_7585157_SNP [dm3] X_7691124_SNP [dm6]	T	A	1.329e^-4	0.664	INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	13132160	3R_13132160_SNP [dm3] 3R_17306438_SNP [dm6]	G	A	1.332e^-4	0.664	INTERGENIC
3R	4952771	3R_4952771_SNP [dm3] 3R_9127049_SNP [dm6]	A	G	1.339e^-4	0.664	INTRON pum
2R	14564921	2R_14564921_SNP [dm3] 2R_18677416_SNP [dm6]	A	T	1.345e^-4	0.664	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	5509260	2R_5509260_SNP [dm3] 2R_9621755_SNP [dm6]	G	C	1.345e^-4	0.664	UPSTREAM mir-307a DOWNSTREAM mir-307b INTRON Mmp2
3R	24549255	3R_24549255_SNP [dm3] 3R_28723533_SNP [dm6]	G	T	1.348e^-4	0.664	INTRON htt	TF binding site mE1_TFBS_chinmo
2R	13556727	2R_13556727_SNP [dm3] 2R_17669222_SNP [dm6]	A	T	1.348e^-4	0.664	UTR_3_PRIME eIF3-S8 UPSTREAM CG30108 & 1 other DOWNSTREAM eIF3-S8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
2L	21998906	2L_21998906_SNP [dm3] 2L_21998906_SNP [dm6]	C	A	1.352e^-4	0.664	DOWNSTREAM CR44916 INTERGENIC	transposable element FlyBase
3L	10613405	3L_10613405_SNP [dm3] 3L_10620305_SNP [dm6]	G	C	1.361e^-4	0.664	INTERGENIC
3R	23519319	3R_23519319_SNP [dm3] 3R_27693597_SNP [dm6]	G	A	1.363e^-4	0.664	UPSTREAM CG43319 DOWNSTREAM CG12880 INTERGENIC
3L	18346603	3L_18346603_SNP [dm3] 3L_18353503_SNP [dm6]	G	T	1.366e^-4	0.664	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	5833175	3R_5833175_SNP [dm3] 3R_10007453_SNP [dm6]	T	C	1.368e^-4	0.664	NON_SYNONYMOUS_CODING Mical UTR_3_PRIME Mical	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	20907550	3L_20907550_SNP [dm3] 3L_20914450_SNP [dm6]	A	C	1.369e^-4	0.664	UPSTREAM CR43930 INTERGENIC
2L	15084985	2L_15084985_SNP [dm3] 2L_15084985_SNP [dm6]	A	T	1.373e^-4	0.664	INTRON CG15270
2R	12022202	2R_12022202_SNP [dm3] 2R_16134697_SNP [dm6]	T	C	1.374e^-4	0.664	INTRON spin
3R	4959503	3R_4959503_SNP [dm3] 3R_9133781_SNP [dm6]	C	A	1.377e^-4	0.664	INTRON pum
2R	19274998	2R_19274998_SNP [dm3] 2R_23387475_SNP [dm6]	G	C	1.379e^-4	0.664	NON_SYNONYMOUS_CODING eIF2B-delta	TF binding site mE1_TFBS_sens
3R	6730687	3R_6730687_SNP [dm3] 3R_10904965_SNP [dm6]	C	G	1.380e^-4	0.664	INTERGENIC
2L	5080747	2L_5080747_SNP [dm3] 2L_5080747_SNP [dm6]	T	C	1.384e^-4	0.664	INTRON pgant5
3L	14100584	3L_14100584_SNP [dm3] 3L_14107484_SNP [dm6]	T	C	1.384e^-4	0.664	INTRON Sox21a	TF binding site BDTNP1_TFBS_dl
3L	2813019	3L_2813019_SNP [dm3] 3L_2813019_SNP [dm6]	A	G	1.391e^-4	0.664	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	24150129	3R_24150129_SNP [dm3] 3R_28324407_SNP [dm6]	G	A	1.391e^-4	0.664	SYNONYMOUS_CODING larp UTR_5_PRIME larp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16361229	2R_16361229_SNP [dm3] 2R_20473724_SNP [dm6]	G	T	1.415e^-4	0.671	INTRON CG12484
3L	2894083	3L_2894083_DEL [dm3] 3L_2894083_DEL [dm6]	TT	G	1.421e^-4	0.671	UPSTREAM Shab INTERGENIC
2L	22888650	2L_22888650_SNP [dm3] 2L_22995918_SNP [dm6]	G	A	1.423e^-4	0.671	INTERGENIC
3L	7875211	3L_7875211_SNP [dm3] 3L_7882111_SNP [dm6]	A	T	1.424e^-4	0.671	INTRON CG32365
3R	6253280	3R_6253280_SNP [dm3] 3R_10427558_SNP [dm6]	T	A	1.425e^-4	0.671	INTERGENIC
X	21844979	X_21844979_SNP [dm3] X_22443143_SNP [dm6]	G	A	1.431e^-4	0.672	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14030411	3R_14030411_SNP [dm3] 3R_18204689_SNP [dm6]	G	A	1.440e^-4	0.675	INTRON CG7985
2L	18328268	2L_18328268_SNP [dm3] 2L_18328268_SNP [dm6]	A	T	1.447e^-4	0.676	INTRON Fas3
3L	12583095	3L_12583095_SNP [dm3] 3L_12589995_SNP [dm6]	A	T	1.453e^-4	0.678	INTRON ara	TF binding site BDTNP1_TFBS_twi
X	19906504	X_19906504_SNP [dm3] X_20012471_SNP [dm6]	G	T	1.462e^-4	0.68	INTRON Dop2R
2L	5346953	2L_5346953_SNP [dm3] 2L_5346953_SNP [dm6]	T	A	1.471e^-4	0.682	SYNONYMOUS_CODING nompC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10440428	3R_10440428_SNP [dm3] 3R_14614706_SNP [dm6]	C	T	1.474e^-4	0.682	INTRON CG14853
X	19600188	X_19600188_SNP [dm3] X_19706155_SNP [dm6]	G	C	1.482e^-4	0.684	DOWNSTREAM meso18E INTRON CG14230	TF binding site mE1_TFBS_cad
3R	21185636	3R_21185636_SNP [dm3] 3R_25359914_SNP [dm6]	T	C	1.484e^-4	0.684	SYNONYMOUS_CODING CG11913 INTRON Fur1
X	20356036	X_20356036_SNP [dm3] X_20485009_SNP [dm6]	A	C	1.493e^-4	0.684	INTRON RhoGAP19D
3R	14547967	3R_14547967_SNP [dm3] 3R_18722245_SNP [dm6]	C	T	1.496e^-4	0.684	NON_SYNONYMOUS_CODING CG34283 INTRON Cha	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	5818963	3R_5818963_SNP [dm3] 3R_9993241_SNP [dm6]	T	A	1.496e^-4	0.684	UTR_3_PRIME Glut4EF
3L	3023049	3L_3023049_SNP [dm3] 3L_3023049_SNP [dm6]	C	G	1.502e^-4	0.684	INTERGENIC
X	14035339	X_14035339_SNP [dm3] X_14141306_SNP [dm6]	C	T	1.503e^-4	0.684	UPSTREAM CR44658 INTERGENIC	TF binding site mE1_TFBS_sbb
3R	11857631	3R_11857631_SNP [dm3] 3R_16031909_SNP [dm6]	A	C	1.517e^-4	0.688	INTRON pnr
2R	17725920	2R_17725920_SNP [dm3] 2R_21838415_SNP [dm6]	C	T	1.531e^-4	0.688	SYNONYMOUS_CODING CG4372
2R	10539113	2R_10539113_SNP [dm3] 2R_14651608_SNP [dm6]	A	G	1.532e^-4	0.688	INTERGENIC
3R	6730441	3R_6730441_SNP [dm3] 3R_10904719_SNP [dm6]	T	A	1.534e^-4	0.688	INTERGENIC
3R	3268426	3R_3268426_SNP [dm3] 3R_7442704_SNP [dm6]	T	C	1.537e^-4	0.688	DOWNSTREAM CG14598 INTERGENIC
3L	1646170	3L_1646170_SNP [dm3] 3L_1646170_SNP [dm6]	G	A	1.540e^-4	0.688	SYNONYMOUS_CODING CG17249 UPSTREAM alphaCOP DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9170750	2R_9170750_SNP [dm3] 2R_13283245_SNP [dm6]	T	C	1.545e^-4	0.688	INTRON Dh31-R
3L	21661936	3L_21661936_SNP [dm3] 3L_21668836_SNP [dm6]	A	G	1.546e^-4	0.688	UPSTREAM mir-316 DOWNSTREAM CR43977 INTERGENIC
2L	14763113	2L_14763113_SNP [dm3] 2L_14763113_SNP [dm6]	A	G	1.550e^-4	0.688	NON_SYNONYMOUS_CODING CSN1a DOWNSTREAM CR44858
2R	10867728	2R_10867728_SNP [dm3] 2R_14980223_SNP [dm6]	T	A	1.552e^-4	0.688	UTR_3_PRIME ckn
2L	8807137	2L_8807137_SNP [dm3] 2L_8807137_SNP [dm6]	T	C	1.552e^-4	0.688	INTERGENIC
2L	21906167	2L_21906167_SNP [dm3] 2L_21906167_SNP [dm6]	A	T	1.555e^-4	0.688	UPSTREAM CG1428 INTERGENIC
2R	19024849	2R_19024849_SNP [dm3] 2R_23137326_SNP [dm6]	T	G	1.566e^-4	0.691	INTERGENIC
3R	16278540	3R_16278540_SNP [dm3] 3R_20452818_SNP [dm6]	G	A	1.572e^-4	0.692	INTRON Gfrl
2R	19024800	2R_19024800_SNP [dm3] 2R_23137277_SNP [dm6]	G	A	1.579e^-4	0.693	INTERGENIC
2R	6084095	2R_6084095_SNP [dm3] 2R_10196590_SNP [dm6]	T	G	1.589e^-4	0.693	DOWNSTREAM CG34221 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	15378399	2R_15378399_SNP [dm3] 2R_19490894_SNP [dm6]	G	A	1.591e^-4	0.693	SYNONYMOUS_CODING Oseg6	TF binding site BDTNP1_TFBS_sna mE1_TFBS_inv
2L	18328682	2L_18328682_SNP [dm3] 2L_18328682_SNP [dm6]	C	G	1.598e^-4	0.693	INTRON Fas3
3R	12172399	3R_12172399_SNP [dm3] 3R_16346677_SNP [dm6]	T	G	1.599e^-4	0.693	UTR_3_PRIME CG14879 DOWNSTREAM pad INTRON CG14879
3R	11859952	3R_11859952_SNP [dm3] 3R_16034230_SNP [dm6]	G	A	1.607e^-4	0.693	UPSTREAM pnr INTRON pnr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15150623	2L_15150623_INS [dm3] 2L_15150623_INS [dm6]	A	AGATTTTT	1.608e^-4	0.693	INTERGENIC
X	11952680	X_11952680_SNP [dm3] X_12058647_SNP [dm6]	G	C	1.612e^-4	0.693	INTRON CR43960 & 1 other
3L	1638953	3L_1638953_SNP [dm3] 3L_1638953_SNP [dm6]	G	A	1.616e^-4	0.693	SYNONYMOUS_CODING metl UPSTREAM Bgb INTRON metl	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	15090507	2L_15090507_SNP [dm3] 2L_15090507_SNP [dm6]	T	C	1.618e^-4	0.693	INTRON CG15270
X	10007675	X_10007675_SNP [dm3] X_10113642_SNP [dm6]	C	G	1.618e^-4	0.693	DOWNSTREAM CR44894 INTRON RhoU	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	22582809	3R_22582809_SNP [dm3] 3R_26757087_SNP [dm6]	A	T	1.626e^-4	0.693	EXON CR45562
2L	13237831	2L_13237831_INS [dm3] 2L_13237831_INS [dm6]	T	TT	1.627e^-4	0.693	INTRON CG5867
3L	8233448	3L_8233448_SNP [dm3] 3L_8240348_SNP [dm6]	T	G	1.629e^-4	0.693	NON_SYNONYMOUS_CODING CG7213 UPSTREAM Dscam4 INTRON Dscam4
3R	12682075	3R_12682075_SNP [dm3] 3R_16856353_SNP [dm6]	A	G	1.635e^-4	0.693	UPSTREAM mir-iab-8 DOWNSTREAM iab-4 & 1 other INTRON iab-8 EXON iab-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	20172161	3L_20172161_SNP [dm3] 3L_20179061_SNP [dm6]	A	G	1.637e^-4	0.693	INTRON CG42674	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13699187	2L_13699187_SNP [dm3] 2L_13699187_SNP [dm6]	A	G	1.642e^-4	0.693	INTRON CG31814	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2645904	2L_2645904_SNP [dm3] 2L_2645904_SNP [dm6]	G	A	1.642e^-4	0.693	UPSTREAM CR43852 DOWNSTREAM CG9962 INTERGENIC
2R	13415363	2R_13415363_SNP [dm3] 2R_17527858_SNP [dm6]	G	C	1.652e^-4	0.693	SYNONYMOUS_CODING Patronin	TF binding site mE1_TFBS_HSA
2R	14698672	2R_14698672_SNP [dm3] 2R_18811167_SNP [dm6]	G	T	1.660e^-4	0.693	INTRON CG15096
3R	13139061	3R_13139061_SNP [dm3] 3R_17313339_SNP [dm6]	G	T	1.665e^-4	0.693	INTERGENIC
X	21788589	X_21788589_SNP [dm3] X_22386756_SNP [dm6]	C	T	1.668e^-4	0.693	INTERGENIC
3L	16737720	3L_16737720_SNP [dm3] 3L_16744620_SNP [dm6]	C	A	1.670e^-4	0.693	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	12076864	3L_12076864_INS [dm3] 3L_12083764_INS [dm6]	C	CGGC	1.671e^-4	0.693	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24153838	3R_24153838_SNP [dm3] 3R_28328116_SNP [dm6]	T	G	1.680e^-4	0.693	INTRON larp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_Trl
3L	21600208	3L_21600208_SNP [dm3] 3L_21607108_SNP [dm6]	T	G	1.682e^-4	0.693	INTRON TfAP-2
2R	8344426	2R_8344426_SNP [dm3] 2R_12456921_SNP [dm6]	C	T	1.686e^-4	0.693	INTRON Lac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	21832038	X_21832038_SNP [dm3] X_22430203_SNP [dm6]	G	A	1.689e^-4	0.693	INTERGENIC	transposable element FlyBase
3R	6247377	3R_6247377_SNP [dm3] 3R_10421655_SNP [dm6]	G	A	1.691e^-4	0.693	INTERGENIC
2R	17078585	2R_17078585_SNP [dm3] 2R_21191080_SNP [dm6]	A	G	1.692e^-4	0.693	NON_SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8325888	2L_8325888_SNP [dm3] 2L_8325888_SNP [dm6]	A	G	1.693e^-4	0.693	UPSTREAM CG7781 INTERGENIC
3R	4951475	3R_4951475_SNP [dm3] 3R_9125753_SNP [dm6]	G	A	1.697e^-4	0.693	INTRON pum
2R	14224972	2R_14224972_SNP [dm3] 2R_18337467_SNP [dm6]	A	G	1.703e^-4	0.693	INTRON sbb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	2645982	2L_2645982_SNP [dm3] 2L_2645982_SNP [dm6]	G	A	1.705e^-4	0.693	UPSTREAM CR43852 DOWNSTREAM CG9962 INTERGENIC
3L	10935241	3L_10935241_SNP [dm3] 3L_10942141_SNP [dm6]	C	A	1.708e^-4	0.693	INTERGENIC
2R	19438349	2R_19438349_SNP [dm3] 2R_23550826_SNP [dm6]	T	C	1.714e^-4	0.693	NON_SYNONYMOUS_CODING pita UPSTREAM Dcp-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2L	8466600	2L_8466600_SNP [dm3] 2L_8466600_SNP [dm6]	C	T	1.716e^-4	0.693	UTR_3_PRIME fu2 UPSTREAM d DOWNSTREAM fu2	TF binding site BDTNP1_TFBS_dl
2R	14224971	2R_14224971_SNP [dm3] 2R_18337466_SNP [dm6]	A	C	1.717e^-4	0.693	INTRON sbb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	11703374	X_11703374_SNP [dm3] X_11809341_SNP [dm6]	C	T	1.718e^-4	0.693	UTR_3_PRIME CG1578 DOWNSTREAM CG1578
3L	14345663	3L_14345663_SNP [dm3] 3L_14352563_SNP [dm6]	A	G	1.727e^-4	0.694	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6889832	2R_6889832_SNP [dm3] 2R_11002327_SNP [dm6]	T	A	1.733e^-4	0.694	INTRON luna
2L	15296322	2L_15296322_SNP [dm3] 2L_15296322_SNP [dm6]	C	T	1.734e^-4	0.694	EXON CR43764
3L	10613370	3L_10613370_DEL [dm3] 3L_10620270_DEL [dm6]	TCCTTATAAATTTGTGTAAT...	T	1.736e^-4	0.694	INTERGENIC
3R	4930064	3R_4930064_SNP [dm3] 3R_9104342_SNP [dm6]	G	T	1.749e^-4	0.696	INTRON pum
2R	4909776	2R_4909776_SNP [dm3] 2R_9022271_SNP [dm6]	A	G	1.750e^-4	0.696	SYNONYMOUS_CODING CG8170	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5615886	X_5615886_SNP [dm3] X_5721853_SNP [dm6]	A	T	1.754e^-4	0.696	INTRON CG32758
2L	21906528	2L_21906528_SNP [dm3] 2L_21906528_SNP [dm6]	A	G	1.755e^-4	0.696	NON_SYNONYMOUS_CODING CG1428	TF binding site mE1_TFBS_cad
2L	7057433	2L_7057433_SNP [dm3] 2L_7057433_SNP [dm6]	C	T	1.763e^-4	0.697	SYNONYMOUS_CODING Mnn1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7257427	3L_7257427_SNP [dm3] 3L_7264327_SNP [dm6]	A	G	1.768e^-4	0.698	UPSTREAM CG14830 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	8246386	2L_8246386_SNP [dm3] 2L_8246386_SNP [dm6]	T	C	1.772e^-4	0.698	INTRON CG8086
2R	19438380	2R_19438380_SNP [dm3] 2R_23550857_SNP [dm6]	A	C	1.790e^-4	0.704	SYNONYMOUS_CODING pita UPSTREAM Dcp-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	21788568	X_21788568_SNP [dm3] X_22386735_SNP [dm6]	G	T	1.797e^-4	0.704	INTERGENIC	transposable element FlyBase
2R	16610995	2R_16610995_SNP [dm3] 2R_20723490_SNP [dm6]	T	C	1.800e^-4	0.704	DOWNSTREAM CR44660 INTRON dpr
2R	20518051	2R_20518051_SNP [dm3] 2R_24630528_SNP [dm6]	C	T	1.802e^-4	0.704	UPSTREAM Cyp9c1 DOWNSTREAM CR43787 INTRON CG13594
2R	5112660	2R_5112660_SNP [dm3] 2R_9225155_SNP [dm6]	T	C	1.807e^-4	0.704	INTERGENIC
3R	11857592	3R_11857592_SNP [dm3] 3R_16031870_SNP [dm6]	A	T	1.811e^-4	0.704	INTRON pnr
2R	6984375	2R_6984375_INS [dm3] 2R_11096870_INS [dm6]	A	AA	1.814e^-4	0.704	INTRON luna	TF binding site BDTNP1_TFBS_twi
3R	4949587	3R_4949587_SNP [dm3] 3R_9123865_SNP [dm6]	C	T	1.819e^-4	0.704	INTRON pum
2L	16798114	2L_16798114_SNP [dm3] 2L_16798114_SNP [dm6]	A	C	1.834e^-4	0.705	NON_SYNONYMOUS_CODING Ugt36Bb UPSTREAM Ugt36Bc
3L	20907418	3L_20907418_SNP [dm3] 3L_20914318_SNP [dm6]	C	A	1.835e^-4	0.705	UPSTREAM CR43930 INTERGENIC
2R	16866165	2R_16866165_SNP [dm3] 2R_20978660_SNP [dm6]	G	C	1.838e^-4	0.705	UTR_5_PRIME CG15650 UPSTREAM CG9313 & 1 other
2R	18364803	2R_18364803_SNP [dm3] 2R_22477298_SNP [dm6]	G	A	1.841e^-4	0.705	UPSTREAM CG45062 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	13549637	3L_13549637_SNP [dm3] 3L_13556537_SNP [dm6]	A	C	1.842e^-4	0.705	INTRON bru-3
3L	774816	3L_774816_INS [dm3] 3L_774816_INS [dm6]	A	ACA	1.853e^-4	0.705	INTERGENIC	TF binding site mE1_TFBS_sens
3L	16245081	3L_16245081_SNP [dm3] 3L_16251981_SNP [dm6]	G	T	1.861e^-4	0.705	SYNONYMOUS_CODING CG13055	TF binding site mE1_TFBS_chinmo
3R	5790805	3R_5790805_SNP [dm3] 3R_9965083_SNP [dm6]	T	G	1.861e^-4	0.705	INTRON Glut4EF	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1611604	3L_1611604_SNP [dm3] 3L_1611604_SNP [dm6]	T	C	1.862e^-4	0.705	SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site mE1_TFBS_chinmo
X	10543729	X_10543729_SNP [dm3] X_10649696_SNP [dm6]	A	G	1.863e^-4	0.705	INTRON X11Lbeta
3R	9902281	3R_9902281_SNP [dm3] 3R_14076559_SNP [dm6]	T	G	1.866e^-4	0.705	INTRON foxo
3R	5963505	3R_5963505_SNP [dm3] 3R_10137783_SNP [dm6]	T	C	1.868e^-4	0.705	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	2782693	2L_2782693_SNP [dm3] 2L_2782693_SNP [dm6]	A	G	1.869e^-4	0.705	UTR_3_PRIME Syt1
3L	10425429	3L_10425429_SNP [dm3] 3L_10432329_SNP [dm6]	C	A	1.875e^-4	0.706	UPSTREAM Ir67b DOWNSTREAM Ir67c INTERGENIC
3R	17319760	3R_17319760_SNP [dm3] 3R_21494038_SNP [dm6]	C	A	1.878e^-4	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3327242	3L_3327242_SNP [dm3] 3L_3327242_SNP [dm6]	T	A	1.891e^-4	0.708	INTRON CG11526 & 1 other	TF binding site mE1_TFBS_cnc
3R	6293634	3R_6293634_SNP [dm3] 3R_10467912_SNP [dm6]	C	A	1.892e^-4	0.708	INTERGENIC
2L	13642467	2L_13642467_SNP [dm3] 2L_13642467_SNP [dm6]	G	T	1.906e^-4	0.71	UTR_5_PRIME ics UPSTREAM CR44726 & 1 other	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	1646793	3L_1646793_SNP [dm3] 3L_1646793_SNP [dm6]	G	A	1.906e^-4	0.71	NON_SYNONYMOUS_CODING CG17249 DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8506498	2L_8506498_SNP [dm3] 2L_8506498_SNP [dm6]	A	T	1.911e^-4	0.71	INTRON Dh31
3R	10440451	3R_10440451_SNP [dm3] 3R_14614729_SNP [dm6]	C	T	1.913e^-4	0.71	INTRON CG14853
3R	26105778	3R_26105778_SNP [dm3] 3R_30280056_SNP [dm6]	C	T	1.917e^-4	0.71	SYNONYMOUS_CODING hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21775574	2L_21775574_INS [dm3] 2L_21775574_INS [dm6]	A	ATC	1.928e^-4	0.713	INTRON CG31612	TF binding site mE1_TFBS_HSA transposable element FlyBase
2R	10868453	2R_10868453_SNP [dm3] 2R_14980948_SNP [dm6]	G	A	1.941e^-4	0.713	UPSTREAM pcs DOWNSTREAM ckn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
3R	6323647	3R_6323647_SNP [dm3] 3R_10497925_SNP [dm6]	C	T	1.945e^-4	0.713	INTERGENIC
X	7588653	X_7588653_SNP [dm3] X_7694620_SNP [dm6]	T	A	1.952e^-4	0.713	INTRON CHES-1-like	TF binding site mE1_TFBS_Trl
3R	5865456	3R_5865456_SNP [dm3] 3R_10039734_SNP [dm6]	C	T	1.955e^-4	0.713	INTRON Mical
2R	4909884	2R_4909884_SNP [dm3] 2R_9022379_SNP [dm6]	A	G	1.957e^-4	0.713	SYNONYMOUS_CODING CG8170	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	5790856	3R_5790856_SNP [dm3] 3R_9965134_SNP [dm6]	G	T	1.966e^-4	0.713	INTRON Glut4EF	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10651146	2R_10651146_SNP [dm3] 2R_14763641_SNP [dm6]	G	A	1.967e^-4	0.713	INTRON Spred
3R	5865368	3R_5865368_SNP [dm3] 3R_10039646_SNP [dm6]	A	T	1.971e^-4	0.713	INTRON Mical
3R	5922351	3R_5922351_SNP [dm3] 3R_10096629_SNP [dm6]	G	C	1.977e^-4	0.713	EXON CR43459
2L	21785498	2L_21785498_SNP [dm3] 2L_21785498_SNP [dm6]	A	T	1.995e^-4	0.713	INTRON CG31612
3L	16509301	3L_16509301_SNP [dm3] 3L_16516201_SNP [dm6]	G	T	1.999e^-4	0.713	INTRON CG43373
X	18222879	X_18222879_SNP [dm3] X_18328846_SNP [dm6]	A	C	2.004e^-4	0.713	INTRON CG6123
X	5615843	X_5615843_SNP [dm3] X_5721810_SNP [dm6]	A	T	2.014e^-4	0.713	INTRON CG32758
3R	5880524	3R_5880524_SNP [dm3] 3R_10054802_SNP [dm6]	A	G	2.015e^-4	0.713	UPSTREAM CR44192 DOWNSTREAM Npc2e & 1 other INTERGENIC
3R	11861018	3R_11861018_DEL [dm3] 3R_16035296_DEL [dm6]	ACT	A	2.023e^-4	0.713	INTRON pnr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	2623149	2L_2623149_SNP [dm3] 2L_2623149_SNP [dm6]	G	A	2.027e^-4	0.713	INTERGENIC
3R	25136555	3R_25136555_SNP [dm3] 3R_29310833_SNP [dm6]	G	C	2.059e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	1228793	2L_1228793_SNP [dm3] 2L_1228793_SNP [dm6]	T	C	2.065e^-4	0.713	SYNONYMOUS_CODING CG42329
3R	26105856	3R_26105856_SNP [dm3] 3R_30280134_SNP [dm6]	C	T	2.080e^-4	0.713	SYNONYMOUS_CODING hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18628442	2L_18628442_SNP [dm3] 2L_18628442_SNP [dm6]	A	G	2.087e^-4	0.713	INTRON MESR3	TF binding site BDTNP1_TFBS_dl
3L	14346212	3L_14346212_SNP [dm3] 3L_14353112_SNP [dm6]	C	T	2.088e^-4	0.713	INTRON fz	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18222820	X_18222820_DEL [dm3] X_18328787_DEL [dm6]	TT	T	2.093e^-4	0.713	INTRON CG6123
3R	25891541	3R_25891541_SNP [dm3] 3R_30065819_SNP [dm6]	C	A	2.094e^-4	0.713	INTRON sima
3R	5783591	3R_5783591_SNP [dm3] 3R_9957869_SNP [dm6]	T	C	2.096e^-4	0.713	INTRON Glut4EF
3R	5970308	3R_5970308_SNP [dm3] 3R_10144586_SNP [dm6]	T	C	2.097e^-4	0.713	UPSTREAM Invadolysin & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2645902	2L_2645902_SNP [dm3] 2L_2645902_SNP [dm6]	T	C	2.100e^-4	0.713	UPSTREAM CR43852 DOWNSTREAM CG9962 INTERGENIC
2L	18328109	2L_18328109_SNP [dm3] 2L_18328109_SNP [dm6]	C	G	2.101e^-4	0.713	INTRON Fas3
3R	9165508	3R_9165508_SNP [dm3] 3R_13339786_SNP [dm6]	A	C	2.108e^-4	0.713	INTRON PK2-R1
2L	18328372	2L_18328372_SNP [dm3] 2L_18328372_SNP [dm6]	C	G	2.108e^-4	0.713	INTRON Fas3
2R	20567294	2R_20567294_SNP [dm3] 2R_24679771_SNP [dm6]	A	G	2.111e^-4	0.713	INTRON Mmp1
2R	16610977	2R_16610977_SNP [dm3] 2R_20723472_SNP [dm6]	A	G	2.114e^-4	0.713	DOWNSTREAM CR44660 INTRON dpr
3R	9165943	3R_9165943_SNP [dm3] 3R_13340221_SNP [dm6]	A	C	2.114e^-4	0.713	NON_SYNONYMOUS_CODING PK2-R1
2R	8775150	2R_8775150_SNP [dm3] 2R_12887645_SNP [dm6]	G	T	2.119e^-4	0.713	INTRON vg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15378260	2R_15378260_SNP [dm3] 2R_19490755_SNP [dm6]	C	G	2.131e^-4	0.713	INTRON Oseg6	TF binding site mE1_TFBS_inv
2R	17786108	2R_17786108_SNP [dm3] 2R_21898603_SNP [dm6]	G	C	2.136e^-4	0.713	INTRON Fili
3R	25167628	3R_25167628_SNP [dm3] 3R_29341906_SNP [dm6]	A	T	2.142e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24153969	3R_24153969_SNP [dm3] 3R_28328247_SNP [dm6]	T	G	2.143e^-4	0.713	UTR_5_PRIME larp INTRON larp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	12172294	3R_12172294_DEL [dm3] 3R_16346572_DEL [dm6]	CTGCAA	C	2.144e^-4	0.713	UTR_3_PRIME CG14879 DOWNSTREAM pad INTRON CG14879
2R	19024797	2R_19024797_SNP [dm3] 2R_23137274_SNP [dm6]	C	T	2.159e^-4	0.713	INTERGENIC
3R	8353659	3R_8353659_SNP [dm3] 3R_12527937_SNP [dm6]	C	A	2.168e^-4	0.713	NON_SYNONYMOUS_CODING Hug INTRON Octbeta3R
3R	5864949	3R_5864949_SNP [dm3] 3R_10039227_SNP [dm6]	C	T	2.169e^-4	0.713	INTRON Mical
2L	16491251	2L_16491251_DEL [dm3] 2L_16491251_DEL [dm6]	GAAG	G	2.172e^-4	0.713	UPSTREAM Tpr2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx
3L	1086478	3L_1086478_SNP [dm3] 3L_1086478_SNP [dm6]	C	T	2.175e^-4	0.713	INTRON bab1
2L	15140496	2L_15140496_SNP [dm3] 2L_15140496_SNP [dm6]	G	T	2.178e^-4	0.713	INTERGENIC
3R	5864986	3R_5864986_SNP [dm3] 3R_10039264_SNP [dm6]	T	A	2.178e^-4	0.713	INTRON Mical
3L	3021116	3L_3021116_SNP [dm3] 3L_3021116_SNP [dm6]	T	A	2.178e^-4	0.713	INTERGENIC
2L	15140493	2L_15140493_SNP [dm3] 2L_15140493_SNP [dm6]	C	T	2.179e^-4	0.713	INTERGENIC
2L	9880852	2L_9880852_SNP [dm3] 2L_9880852_SNP [dm6]	T	C	2.180e^-4	0.713	INTRON nAChRalpha6
3L	21483362	3L_21483362_SNP [dm3] 3L_21490262_SNP [dm6]	C	T	2.187e^-4	0.713	INTRON Neu2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21896969	2L_21896969_SNP [dm3] 2L_21896969_SNP [dm6]	A	C	2.188e^-4	0.713	SYNONYMOUS_CODING CG11629	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	21914973	2L_21914973_SNP [dm3] 2L_21914973_SNP [dm6]	T	C	2.194e^-4	0.713	SPLICE_SITE_REGION CG31600 INTRON CG31600
3L	3929635	3L_3929635_INS [dm3] 3L_3929635_INS [dm6]	A	AA	2.195e^-4	0.713	UPSTREAM Eip63F-1 INTRON Eip63F-1
2R	4925803	2R_4925803_SNP [dm3] 2R_9038298_SNP [dm6]	G	A	2.196e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	15307291	2L_15307291_SNP [dm3] 2L_15307291_SNP [dm6]	G	T	2.197e^-4	0.713	INTERGENIC
2R	8136210	2R_8136210_SNP [dm3] 2R_12248705_SNP [dm6]	A	C	2.203e^-4	0.713	INTERGENIC
2L	13354985	2L_13354985_SNP [dm3] 2L_13354985_SNP [dm6]	G	C	2.204e^-4	0.713	UTR_5_PRIME CG9395	TF binding site mE1_TFBS_Trl
2L	4015838	2L_4015838_SNP [dm3] 2L_4015838_SNP [dm6]	C	T	2.208e^-4	0.713	INTERGENIC
2R	12964987	2R_12964987_SNP [dm3] 2R_17077482_SNP [dm6]	C	G	2.212e^-4	0.713	INTRON CG30460
2R	13552378	2R_13552378_SNP [dm3] 2R_17664873_SNP [dm6]	C	A	2.222e^-4	0.713	UTR_5_PRIME CCHa1-R UPSTREAM eIF3-S8	TF binding site BDTNP1_TFBS_dl
X	3376671	X_3376671_SNP [dm3] X_3482638_SNP [dm6]	G	A	2.224e^-4	0.713	UPSTREAM CG10802 & 1 other INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	13469360	3R_13469360_SNP [dm3] 3R_17643638_SNP [dm6]	A	G	2.229e^-4	0.713	INTRON CG43175
2L	5150023	2L_5150023_SNP [dm3] 2L_5150023_SNP [dm6]	G	C	2.231e^-4	0.713	INTRON Msp300
X	18124397	X_18124397_SNP [dm3] X_18230364_SNP [dm6]	A	G	2.235e^-4	0.713	INTERGENIC
X	17958732	X_17958732_SNP [dm3] X_18064699_SNP [dm6]	A	C	2.235e^-4	0.713	NON_SYNONYMOUS_CODING Dhc16F
3L	21333764	3L_21333764_SNP [dm3] 3L_21340664_SNP [dm6]	C	A	2.235e^-4	0.713	SYNONYMOUS_CODING CG7324	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8131747	X_8131747_SNP [dm3] X_8237714_SNP [dm6]	A	T	2.235e^-4	0.713	INTRON sdt
2L	21900063	2L_21900063_SNP [dm3] 2L_21900063_SNP [dm6]	T	A	2.244e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	16185786	3R_16185786_SNP [dm3] 3R_20360064_SNP [dm6]	T	C	2.246e^-4	0.713	UPSTREAM MtnC INTRON CR45023
2R	9166754	2R_9166754_SNP [dm3] 2R_13279249_SNP [dm6]	C	T	2.249e^-4	0.713	INTRON Dh31-R
X	5251186	X_5251186_SNP [dm3] X_5357153_SNP [dm6]	G	A	2.249e^-4	0.713	INTRON SK
2L	18858666	2L_18858666_SNP [dm3] 2L_18858666_SNP [dm6]	G	C	2.250e^-4	0.713	UPSTREAM CG10602 DOWNSTREAM tup INTRON CG10602 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
X	14158069	X_14158069_SNP [dm3] X_14264036_SNP [dm6]	T	C	2.254e^-4	0.713	SYNONYMOUS_CODING CG1461 DOWNSTREAM CG13404
2R	20352611	2R_20352611_SNP [dm3] 2R_24465088_SNP [dm6]	C	A	2.257e^-4	0.713	INTRON CG13579	regulatory region REDfly_CRMs
3R	7256204	3R_7256204_SNP [dm3] 3R_11430482_SNP [dm6]	T	C	2.260e^-4	0.713	NON_SYNONYMOUS_CODING CG18643 UTR_3_PRIME CG18643 DOWNSTREAM RpL24-like & 1 other
2L	4423800	2L_4423800_SNP [dm3] 2L_4423800_SNP [dm6]	C	T	2.261e^-4	0.713	INTRON CG15431	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8316065	3L_8316065_SNP [dm3] 3L_8322965_SNP [dm6]	G	A	2.269e^-4	0.713	DOWNSTREAM CG13670 INTERGENIC
3L	21634122	3L_21634122_SNP [dm3] 3L_21641022_SNP [dm6]	C	A	2.278e^-4	0.713	UTR_5_PRIME Atox1 DOWNSTREAM CG32445	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
3L	21634123	3L_21634123_SNP [dm3] 3L_21641023_SNP [dm6]	C	A	2.278e^-4	0.713	UTR_5_PRIME Atox1 DOWNSTREAM CG32445	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
3R	4929727	3R_4929727_SNP [dm3] 3R_9104005_SNP [dm6]	A	G	2.282e^-4	0.713	INTRON pum
3R	25091469	3R_25091469_SNP [dm3] 3R_29265747_SNP [dm6]	C	T	2.285e^-4	0.713	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	22348613	2L_22348613_SNP [dm3] 2L_22348613_SNP [dm6]	G	A	2.286e^-4	0.713	INTRON CG17018
2L	21939186	2L_21939186_SNP [dm3] 2L_21939186_SNP [dm6]	A	T	2.288e^-4	0.713	INTERGENIC
2R	4176364	2R_4176364_SNP [dm3] 2R_8288859_SNP [dm6]	T	C	2.295e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	4952780	3R_4952780_SNP [dm3] 3R_9127058_SNP [dm6]	C	T	2.300e^-4	0.713	INTRON pum
3R	24153967	3R_24153967_SNP [dm3] 3R_28328245_SNP [dm6]	T	G	2.300e^-4	0.713	UTR_5_PRIME larp INTRON larp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	3555391	X_3555391_SNP [dm3] X_3661358_SNP [dm6]	A	G	2.303e^-4	0.713	INTRON AstA-R1
2R	6530475	2R_6530475_DEL [dm3] 2R_10642970_DEL [dm6]	ATAAATCAATA...	A	2.303e^-4	0.713	INTRON Git	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9986800	3R_9986800_SNP [dm3] 3R_14161078_SNP [dm6]	A	T	2.306e^-4	0.713	UPSTREAM CG31327 INTERGENIC
2R	8413150	2R_8413150_SNP [dm3] 2R_12525645_SNP [dm6]	A	G	2.308e^-4	0.713	INTERGENIC
2L	6100300	2L_6100300_SNP [dm3] 2L_6100300_SNP [dm6]	A	G	2.319e^-4	0.713	UPSTREAM stai INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2428384	3L_2428384_SNP [dm3] 3L_2428384_SNP [dm6]	C	T	2.321e^-4	0.713	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13247384	2R_13247384_SNP [dm3] 2R_17359879_SNP [dm6]	T	A	2.322e^-4	0.713	UTR_3_PRIME mbl INTRON mbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9947253	2L_9947253_SNP [dm3] 2L_9947253_SNP [dm6]	G	C	2.323e^-4	0.713	INTRON CG5853
X	7589667	X_7589667_SNP [dm3] X_7695634_SNP [dm6]	C	T	2.323e^-4	0.713	UPSTREAM CHES-1-like INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3L	722301	3L_722301_SNP [dm3] 3L_722301_SNP [dm6]	T	C	2.326e^-4	0.713	INTERGENIC
2R	17870560	2R_17870560_SNP [dm3] 2R_21983055_SNP [dm6]	A	G	2.327e^-4	0.713	INTERGENIC
2R	15394522	2R_15394522_SNP [dm3] 2R_19507017_SNP [dm6]	A	T	2.333e^-4	0.713	UPSTREAM tRNA:H:56E INTERGENIC
3R	4953240	3R_4953240_SNP [dm3] 3R_9127518_SNP [dm6]	G	A	2.336e^-4	0.713	INTRON pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11859175	3R_11859175_SNP [dm3] 3R_16033453_SNP [dm6]	A	T	2.350e^-4	0.713	INTRON pnr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	8390929	3R_8390929_SNP [dm3] 3R_12565207_SNP [dm6]	T	C	2.355e^-4	0.713	INTRON Octbeta2R
2R	10661585	2R_10661585_SNP [dm3] 2R_14774080_SNP [dm6]	T	A	2.374e^-4	0.713	INTRON kn	TF binding site mE1_TFBS_cad
3L	9127703	3L_9127703_SNP [dm3] 3L_9134603_SNP [dm6]	C	G	2.376e^-4	0.713	UTR_5_PRIME Dhpr UPSTREAM Dhpr & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	9200546	2R_9200546_SNP [dm3] 2R_13313041_SNP [dm6]	C	T	2.379e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14068370	3L_14068370_SNP [dm3] 3L_14075270_SNP [dm6]	T	C	2.384e^-4	0.713	SYNONYMOUS_CODING Pex1 UPSTREAM btl
2R	9108250	2R_9108250_SNP [dm3] 2R_13220745_SNP [dm6]	A	C	2.398e^-4	0.713	UPSTREAM CG4646 DOWNSTREAM Fsn INTRON CG17059	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
2L	8354910	2L_8354910_SNP [dm3] 2L_8354910_SNP [dm6]	A	G	2.407e^-4	0.713	NON_SYNONYMOUS_CODING Mur29B DOWNSTREAM CG7627
X	14293719	X_14293719_SNP [dm3] X_14399686_SNP [dm6]	A	C	2.409e^-4	0.713	INTRON dpr8
3R	13134900	3R_13134900_SNP [dm3] 3R_17309178_SNP [dm6]	G	A	2.411e^-4	0.713	INTERGENIC
3R	25944442	3R_25944442_SNP [dm3] 3R_30118720_SNP [dm6]	C	T	2.411e^-4	0.713	INTRON sima	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17726118	2R_17726118_SNP [dm3] 2R_21838613_SNP [dm6]	C	T	2.412e^-4	0.713	SYNONYMOUS_CODING CG4372
3R	6253307	3R_6253307_SNP [dm3] 3R_10427585_SNP [dm6]	G	T	2.414e^-4	0.713	INTERGENIC
3R	10119599	3R_10119599_INS [dm3] 3R_14293877_INS [dm6]	C	CTGTTACTCTCTAC...	2.415e^-4	0.713	INTRON CG12207
3R	10119602	3R_10119602_SNP [dm3] 3R_14293880_SNP [dm6]	T	A	2.415e^-4	0.713	INTRON CG12207
3R	26864029	3R_26864029_SNP [dm3] 3R_31038307_SNP [dm6]	G	A	2.432e^-4	0.713	INTERGENIC
3L	7785538	3L_7785538_SNP [dm3] 3L_7792438_SNP [dm6]	G	T	2.436e^-4	0.713	INTRON CG32369
3R	5894517	3R_5894517_SNP [dm3] 3R_10068795_SNP [dm6]	C	A	2.441e^-4	0.713	DOWNSTREAM CG33784 INTERGENIC
3L	3929647	3L_3929647_SNP [dm3] 3L_3929647_SNP [dm6]	G	A	2.448e^-4	0.713	UPSTREAM Eip63F-1 INTRON Eip63F-1
3R	24947651	3R_24947651_SNP [dm3] 3R_29121929_SNP [dm6]	A	G	2.451e^-4	0.713	INTRON yem	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	10662773	2L_10662773_SNP [dm3] 2L_10662773_SNP [dm6]	C	A	2.455e^-4	0.713	INTRON CG31871
2L	18328363	2L_18328363_SNP [dm3] 2L_18328363_SNP [dm6]	T	A	2.471e^-4	0.713	INTRON Fas3
3L	18197536	3L_18197536_SNP [dm3] 3L_18204436_SNP [dm6]	T	C	2.473e^-4	0.713	DOWNSTREAM CG7320 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
3R	3402074	3R_3402074_SNP [dm3] 3R_7576352_SNP [dm6]	A	G	2.474e^-4	0.713	INTRON CG34127	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	4280105	X_4280105_SNP [dm3] X_4386072_SNP [dm6]	T	A	2.477e^-4	0.713	INTERGENIC	regulatory region REDfly_CRMs
3R	13570405	3R_13570405_SNP [dm3] 3R_17744683_SNP [dm6]	A	C	2.480e^-4	0.713	INTRON TyrRII
2R	5033939	2R_5033939_SNP [dm3] 2R_9146434_SNP [dm6]	G	C	2.482e^-4	0.713	INTRON CG30344
3R	6310539	3R_6310539_DEL [dm3] 3R_10484817_DEL [dm6]	GCTCACA	G	2.485e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_cad
2L	15386272	2L_15386272_INS [dm3] 2L_15386272_INS [dm6]	G	TTTC	2.497e^-4	0.713	INTERGENIC
2L	21879086	2L_21879086_SNP [dm3] 2L_21879086_SNP [dm6]	C	G	2.508e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	3268396	3R_3268396_SNP [dm3] 3R_7442674_SNP [dm6]	T	A	2.511e^-4	0.713	DOWNSTREAM CG14598 INTERGENIC
3R	8587669	3R_8587669_SNP [dm3] 3R_12761947_SNP [dm6]	G	C	2.520e^-4	0.713	INTRON beat-Vc
2R	16603889	2R_16603889_SNP [dm3] 2R_20716384_SNP [dm6]	T	G	2.521e^-4	0.713	INTRON dpr
3L	21657246	3L_21657246_SNP [dm3] 3L_21664146_SNP [dm6]	C	T	2.523e^-4	0.713	NON_SYNONYMOUS_CODING CG43980	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1144751	3L_1144751_SNP [dm3] 3L_1144751_SNP [dm6]	C	A	2.525e^-4	0.713	INTRON bab2
3R	9165505	3R_9165505_SNP [dm3] 3R_13339783_SNP [dm6]	A	T	2.528e^-4	0.713	INTRON PK2-R1
2R	10661578	2R_10661578_SNP [dm3] 2R_14774073_SNP [dm6]	G	A	2.533e^-4	0.713	INTRON kn
2R	4909380	2R_4909380_SNP [dm3] 2R_9021875_SNP [dm6]	A	G	2.534e^-4	0.713	INTRON CG8170	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6100691	2L_6100691_INS [dm3] 2L_6100691_INS [dm6]	T	TT	2.536e^-4	0.713	INTRON stai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16427946	2R_16427946_SNP [dm3] 2R_20540441_SNP [dm6]	G	A	2.537e^-4	0.713	UTR_5_PRIME CG13428 DOWNSTREAM CR44652	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3R	24774504	3R_24774504_SNP [dm3] 3R_28948782_SNP [dm6]	C	G	2.539e^-4	0.713	INTRON CG14521	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15386274	2L_15386274_SNP [dm3] 2L_15386274_SNP [dm6]	A	T	2.539e^-4	0.713	INTERGENIC
2L	15386277	2L_15386277_INS [dm3] 2L_15386277_INS [dm6]	A	AAC	2.539e^-4	0.713	INTERGENIC
3R	8380171	3R_8380171_SNP [dm3] 3R_12554449_SNP [dm6]	G	A	2.542e^-4	0.713	SYNONYMOUS_CODING Octbeta2R
3R	21675754	3R_21675754_SNP [dm3] 3R_25850032_SNP [dm6]	A	C	2.546e^-4	0.713	DOWNSTREAM CG14545 INTERGENIC
2L	2645977	2L_2645977_SNP [dm3] 2L_2645977_SNP [dm6]	A	C	2.552e^-4	0.713	UPSTREAM CR43852 DOWNSTREAM CG9962 INTERGENIC
3R	16385653	3R_16385653_SNP [dm3] 3R_20559931_SNP [dm6]	C	T	2.553e^-4	0.713	SYNONYMOUS_CODING CG15922 UPSTREAM CG5191 DOWNSTREAM CG5180	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14225833	2R_14225833_SNP [dm3] 2R_18338328_SNP [dm6]	A	G	2.555e^-4	0.713	INTRON sbb	TF binding site BDTNP1_TFBS_dl
2L	984890	2L_984890_SNP [dm3] 2L_984890_SNP [dm6]	A	G	2.561e^-4	0.713	INTERGENIC
2L	9946962	2L_9946962_SNP [dm3] 2L_9946962_SNP [dm6]	A	C	2.563e^-4	0.713	INTRON CG5853
2L	18328357	2L_18328357_SNP [dm3] 2L_18328357_SNP [dm6]	A	T	2.565e^-4	0.713	INTRON Fas3
2R	12138033	2R_12138033_SNP [dm3] 2R_16250528_SNP [dm6]	C	T	2.565e^-4	0.713	UPSTREAM CngA INTRON CngA
2L	16369345	2L_16369345_SNP [dm3] 2L_16369345_SNP [dm6]	T	A	2.567e^-4	0.713	INTERGENIC
2R	14678087	2R_14678087_SNP [dm3] 2R_18790582_SNP [dm6]	T	G	2.579e^-4	0.713	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad
2R	14694819	2R_14694819_INS [dm3] 2R_18807314_INS [dm6]	A	AA	2.579e^-4	0.713	DOWNSTREAM CR44468 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	19437034	2R_19437034_SNP [dm3] 2R_23549511_SNP [dm6]	A	G	2.593e^-4	0.713	SYNONYMOUS_CODING pita DOWNSTREAM levy	TF binding site mE1_TFBS_chinmo
2L	6505304	2L_6505304_SNP [dm3] 2L_6505304_SNP [dm6]	C	T	2.593e^-4	0.713	INTRON CG31637
2L	4855172	2L_4855172_SNP [dm3] 2L_4855172_SNP [dm6]	G	A	2.597e^-4	0.713	INTRON pog
3R	26817423	3R_26817423_SNP [dm3] 3R_30991701_SNP [dm6]	G	C	2.597e^-4	0.713	UTR_3_PRIME CG31007 INTRON 5-HT7
3R	13600041	3R_13600041_SNP [dm3] 3R_17774319_SNP [dm6]	C	T	2.604e^-4	0.713	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
2L	8247550	2L_8247550_SNP [dm3] 2L_8247550_SNP [dm6]	G	A	2.606e^-4	0.713	SYNONYMOUS_CODING CG8086 INTRON CG8086	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	18222824	X_18222824_SNP [dm3] X_18328791_SNP [dm6]	G	A	2.615e^-4	0.713	INTRON CG6123
3R	6301688	3R_6301688_SNP [dm3] 3R_10475966_SNP [dm6]	A	G	2.619e^-4	0.713	INTERGENIC
X	17672539	X_17672539_SNP [dm3] X_17778506_SNP [dm6]	A	T	2.620e^-4	0.713	UTR_3_PRIME unc-4
X	14035600	X_14035600_SNP [dm3] X_14141567_SNP [dm6]	G	A	2.639e^-4	0.713	UPSTREAM CR44658 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15842744	3L_15842744_INS [dm3] 3L_15849644_INS [dm6]	T	TTCGTAT	2.644e^-4	0.713	UTR_3_PRIME pHCl	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	775076	3L_775076_SNP [dm3] 3L_775076_SNP [dm6]	G	T	2.644e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_sens
3L	4341414	3L_4341414_SNP [dm3] 3L_4341414_SNP [dm6]	A	C	2.647e^-4	0.713	INTRON Cip4
3R	5851694	3R_5851694_SNP [dm3] 3R_10025972_SNP [dm6]	T	G	2.648e^-4	0.713	UPSTREAM Mical & 1 other INTRON Mical
2L	6100284	2L_6100284_SNP [dm3] 2L_6100284_SNP [dm6]	T	C	2.651e^-4	0.713	UPSTREAM stai INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2695207	2L_2695207_SNP [dm3] 2L_2695207_SNP [dm6]	A	C	2.653e^-4	0.713	DOWNSTREAM CG15398 INTRON CG31690
2L	634354	2L_634354_SNP [dm3] 2L_634354_SNP [dm6]	A	G	2.655e^-4	0.713	INTERGENIC
3R	7256282	3R_7256282_SNP [dm3] 3R_11430560_SNP [dm6]	C	G	2.665e^-4	0.713	NON_SYNONYMOUS_CODING CG18643 UTR_3_PRIME CG18643 DOWNSTREAM RpL24-like & 1 other
X	19429669	X_19429669_SNP [dm3] X_19535636_SNP [dm6]	C	A	2.671e^-4	0.713	INTRON CG32532
3L	18998410	3L_18998410_SNP [dm3] 3L_19005310_SNP [dm6]	C	G	2.672e^-4	0.713	NON_SYNONYMOUS_CODING nkd UTR_3_PRIME nkd	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	11857068	3R_11857068_SNP [dm3] 3R_16031346_SNP [dm6]	T	G	2.679e^-4	0.713	INTRON pnr
3R	14515011	3R_14515011_SNP [dm3] 3R_18689289_SNP [dm6]	G	A	2.682e^-4	0.713	NON_SYNONYMOUS_CODING Muc91C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	21788596	X_21788596_SNP [dm3] X_22386763_SNP [dm6]	A	C	2.683e^-4	0.713	INTERGENIC
2L	21929390	2L_21929390_SNP [dm3] 2L_21929390_SNP [dm6]	G	C	2.683e^-4	0.713	UPSTREAM CR45334 INTERGENIC
3L	7558943	3L_7558943_SNP [dm3] 3L_7565843_SNP [dm6]	G	A	2.689e^-4	0.713	NON_SYNONYMOUS_CODING frac	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	12755522	3R_12755522_SNP [dm3] 3R_16929800_SNP [dm6]	G	C	2.690e^-4	0.713	SYNONYMOUS_CODING Abd-B
3R	7121092	3R_7121092_SNP [dm3] 3R_11295370_SNP [dm6]	C	T	2.695e^-4	0.713	INTRON CR31386
3L	22690909	3L_22690909_SNP [dm3] 3L_22697809_SNP [dm6]	A	G	2.696e^-4	0.713	UTR_3_PRIME CG32453 DOWNSTREAM CG32453
3R	16184077	3R_16184077_SNP [dm3] 3R_20358355_SNP [dm6]	A	T	2.696e^-4	0.713	UPSTREAM CR45023 INTERGENIC
2L	15075549	2L_15075549_SNP [dm3] 2L_15075549_SNP [dm6]	A	G	2.699e^-4	0.713	UTR_5_PRIME CG15270
3R	13110256	3R_13110256_SNP [dm3] 3R_17284534_SNP [dm6]	T	A	2.700e^-4	0.713	UPSTREAM CG31419 DOWNSTREAM CG31418 INTERGENIC	TF binding site mE1_TFBS_cad
2R	17716626	2R_17716626_SNP [dm3] 2R_21829121_SNP [dm6]	T	G	2.706e^-4	0.713	SYNONYMOUS_CODING CG13492
2R	11573868	2R_11573868_SNP [dm3] 2R_15686363_SNP [dm6]	C	T	2.709e^-4	0.713	SYNONYMOUS_CODING Ranbp11 UPSTREAM CG30082	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3L	722603	3L_722603_SNP [dm3] 3L_722603_SNP [dm6]	C	A	2.711e^-4	0.713	INTERGENIC
X	19871242	X_19871242_SNP [dm3] X_19977209_SNP [dm6]	A	G	2.712e^-4	0.713	INTERGENIC
3L	15863956	3L_15863956_SNP [dm3] 3L_15870856_SNP [dm6]	T	G	2.712e^-4	0.713	INTRON pHCl	TF binding site mE1_TFBS_cad
2L	11453202	2L_11453202_SNP [dm3] 2L_11453202_SNP [dm6]	T	G	2.713e^-4	0.713	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2L	8867771	2L_8867771_SNP [dm3] 2L_8867771_SNP [dm6]	C	T	2.718e^-4	0.713	UPSTREAM CR44414 & 1 other DOWNSTREAM CG9483 INTERGENIC
3R	4891025	3R_4891025_SNP [dm3] 3R_9065303_SNP [dm6]	G	A	2.726e^-4	0.713	NON_SYNONYMOUS_CODING Ada UPSTREAM beag	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	2635031	2L_2635031_SNP [dm3] 2L_2635031_SNP [dm6]	T	C	2.732e^-4	0.713	INTERGENIC
3R	1248477	3R_1248477_SNP [dm3] 3R_5422755_SNP [dm6]	C	G	2.733e^-4	0.713	INTRON CG14669
3R	18554728	3R_18554728_SNP [dm3] 3R_22729006_SNP [dm6]	A	C	2.734e^-4	0.713	UTR_5_PRIME CG45049 INTRON CG45049
X	17861444	X_17861444_SNP [dm3] X_17967411_SNP [dm6]	T	G	2.737e^-4	0.713	UPSTREAM Sh INTRON Sh
2L	13610291	2L_13610291_SNP [dm3] 2L_13610291_SNP [dm6]	C	T	2.739e^-4	0.713	NON_SYNONYMOUS_CODING kuz DOWNSTREAM mir-2489
X	14167586	X_14167586_SNP [dm3] X_14273553_SNP [dm6]	T	A	2.741e^-4	0.713	INTRON na	TF binding site mE1_TFBS_inv
3R	18762886	3R_18762886_SNP [dm3] 3R_22937164_SNP [dm6]	T	C	2.744e^-4	0.713	INTRON klg
2R	16610976	2R_16610976_SNP [dm3] 2R_20723471_SNP [dm6]	C	T	2.748e^-4	0.713	DOWNSTREAM CR44660 INTRON dpr
X	7611735	X_7611735_SNP [dm3] X_7717702_SNP [dm6]	A	G	2.750e^-4	0.713	INTRON CG15478
X	21805764	X_21805764_SNP [dm3] X_22403929_SNP [dm6]	C	T	2.756e^-4	0.713	INTERGENIC	transposable element FlyBase
X	6521977	X_6521977_SNP [dm3] X_6627944_SNP [dm6]	C	T	2.763e^-4	0.713	INTRON pigs
X	14035014	X_14035014_DEL [dm3] X_14140981_DEL [dm6]	GG	G	2.763e^-4	0.713	UPSTREAM CR44658 INTERGENIC
X	5745863	X_5745863_SNP [dm3] X_5851830_SNP [dm6]	T	C	2.771e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10403910	3L_10403910_SNP [dm3] 3L_10410810_SNP [dm6]	G	A	2.772e^-4	0.713	DOWNSTREAM CR44543 INTERGENIC
X	21845295	X_21845295_INS [dm3] X_22443459_INS [dm6]	G	GCCGCACTG	2.780e^-4	0.713	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	18444040	2R_18444040_SNP [dm3] 2R_22556535_SNP [dm6]	G	A	2.783e^-4	0.713	SYNONYMOUS_CODING px	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2782662	2L_2782662_SNP [dm3] 2L_2782662_SNP [dm6]	A	T	2.790e^-4	0.713	UTR_3_PRIME Syt1
X	5408137	X_5408137_DEL [dm3] X_5514104_DEL [dm6]	CTGAATTCAGCGAAGAGC...	C	2.796e^-4	0.713	INTERGENIC
X	21788603	X_21788603_SNP [dm3] X_22386770_SNP [dm6]	T	C	2.803e^-4	0.713	INTERGENIC
2R	17782554	2R_17782554_MNP [dm3] 2R_21895049_MNP [dm6]	GTT	TGA	2.809e^-4	0.713	INTRON Fili
2L	9807179	2L_9807179_SNP [dm3] 2L_9807179_SNP [dm6]	A	T	2.812e^-4	0.713	INTRON nAChRalpha6
3R	14786631	3R_14786631_SNP [dm3] 3R_18960909_SNP [dm6]	C	T	2.814e^-4	0.713	INTRON CG42613 & 1 other
2R	14715591	2R_14715591_SNP [dm3] 2R_18828086_SNP [dm6]	G	A	2.823e^-4	0.713	INTRON CG15097
3R	16988899	3R_16988899_SNP [dm3] 3R_21163177_SNP [dm6]	T	A	2.823e^-4	0.713	UPSTREAM CG5810 INTRON SNF4Agamma
3R	4949009	3R_4949009_SNP [dm3] 3R_9123287_SNP [dm6]	C	A	2.824e^-4	0.713	INTRON pum
3R	8380533	3R_8380533_SNP [dm3] 3R_12554811_SNP [dm6]	G	T	2.832e^-4	0.713	INTRON Octbeta2R
3R	9898732	3R_9898732_SNP [dm3] 3R_14073010_SNP [dm6]	G	A	2.845e^-4	0.713	INTRON foxo
3L	21644989	3L_21644989_SNP [dm3] 3L_21651889_SNP [dm6]	G	C	2.851e^-4	0.713	INTRON CG43980
3L	6840149	3L_6840149_SNP [dm3] 3L_6847049_SNP [dm6]	A	T	2.852e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3L	8857419	3L_8857419_SNP [dm3] 3L_8864319_SNP [dm6]	T	A	2.852e^-4	0.713	INTRON dally
3R	12376182	3R_12376182_SNP [dm3] 3R_16550460_SNP [dm6]	A	C	2.855e^-4	0.713	INTRON CG42342	TF binding site BDTNP1_TFBS_da
3R	7765323	3R_7765323_SNP [dm3] 3R_11939601_SNP [dm6]	T	A	2.857e^-4	0.713	INTRON Cad87A	TF binding site BDTNP1_TFBS_twi
2L	6505374	2L_6505374_SNP [dm3] 2L_6505374_SNP [dm6]	T	C	2.860e^-4	0.713	INTRON CG31637
2L	18328157	2L_18328157_SNP [dm3] 2L_18328157_SNP [dm6]	G	A	2.864e^-4	0.713	INTRON Fas3
2L	21866518	2L_21866518_SNP [dm3] 2L_21866518_SNP [dm6]	A	G	2.864e^-4	0.713	UPSTREAM CR44917 & 1 other DOWNSTREAM CR44919 INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	5759448	3R_5759448_SNP [dm3] 3R_9933726_SNP [dm6]	A	C	2.864e^-4	0.713	INTRON Glut4EF
3L	3022964	3L_3022964_SNP [dm3] 3L_3022964_SNP [dm6]	C	T	2.868e^-4	0.713	INTERGENIC
X	16024943	X_16024943_SNP [dm3] X_16130910_SNP [dm6]	C	T	2.871e^-4	0.713	INTRON disco-r
2R	15378687	2R_15378687_SNP [dm3] 2R_19491182_SNP [dm6]	C	T	2.873e^-4	0.713	SYNONYMOUS_CODING Oseg6 UPSTREAM Rep	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_sens
X	17624794	X_17624794_SNP [dm3] X_17730761_SNP [dm6]	A	T	2.877e^-4	0.713	INTRON CG42684
2R	20335410	2R_20335410_SNP [dm3] 2R_24447887_SNP [dm6]	T	A	2.879e^-4	0.713	INTERGENIC
2R	20909411	2R_20909411_SNP [dm3] 2R_25021888_SNP [dm6]	T	A	2.880e^-4	0.713	INTRON uzip
3L	10699904	3L_10699904_INS [dm3] 3L_10706804_INS [dm6]	A	AA	2.885e^-4	0.713	INTERGENIC
2R	12022198	2R_12022198_SNP [dm3] 2R_16134693_SNP [dm6]	G	A	2.888e^-4	0.713	INTRON spin
2L	15147453	2L_15147453_SNP [dm3] 2L_15147453_SNP [dm6]	C	A	2.899e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	21691662	3R_21691662_DEL [dm3] 3R_25865940_DEL [dm6]	CC	C	2.900e^-4	0.713	INTRON CG5890
2L	17020342	2L_17020342_SNP [dm3] 2L_17020342_SNP [dm6]	A	G	2.905e^-4	0.713	INTERGENIC
3R	16780908	3R_16780908_SNP [dm3] 3R_20955186_SNP [dm6]	G	A	2.911e^-4	0.713	INTRON Atpalpha
2L	15386229	2L_15386229_SNP [dm3] 2L_15386229_SNP [dm6]	G	A	2.912e^-4	0.713	INTERGENIC
2L	15386235	2L_15386235_MNP [dm3] 2L_15386235_MNP [dm6]	TAA	ATT	2.912e^-4	0.713	INTERGENIC
2R	4232609	2R_4232609_SNP [dm3] 2R_8345104_SNP [dm6]	G	T	2.912e^-4	0.713	INTRON pdm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	6398508	3R_6398508_SNP [dm3] 3R_10572786_SNP [dm6]	G	T	2.915e^-4	0.713	INTRON hth	TF binding site BDTNP1_TFBS_dl
2R	16923357	2R_16923357_SNP [dm3] 2R_21035852_SNP [dm6]	C	T	2.920e^-4	0.713	INTERGENIC
2R	18270480	2R_18270480_SNP [dm3] 2R_22382975_SNP [dm6]	T	C	2.921e^-4	0.713	UPSTREAM CG13506 DOWNSTREAM wrapper INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
X	10543654	X_10543654_DEL [dm3] X_10649621_DEL [dm6]	AACAAG	TT	2.924e^-4	0.713	INTRON X11Lbeta
3R	7113316	3R_7113316_SNP [dm3] 3R_11287594_SNP [dm6]	A	G	2.926e^-4	0.713	INTRON CR31386
X	6103021	X_6103021_SNP [dm3] X_6208988_SNP [dm6]	T	C	2.930e^-4	0.713	INTERGENIC
3L	1681084	3L_1681084_SNP [dm3] 3L_1681084_SNP [dm6]	G	A	2.931e^-4	0.713	INTRON CG7991
3L	9764857	3L_9764857_SNP [dm3] 3L_9771757_SNP [dm6]	G	A	2.935e^-4	0.713	UTR_5_PRIME CG8177 INTRON CG8177
3L	7743530	3L_7743530_SNP [dm3] 3L_7750430_SNP [dm6]	C	T	2.936e^-4	0.713	UTR_3_PRIME CG13685 DOWNSTREAM CG13685 INTRON CG32373
2R	17441860	2R_17441860_SNP [dm3] 2R_21554355_SNP [dm6]	A	G	2.941e^-4	0.713	INTRON Egfr
2L	21879057	2L_21879057_SNP [dm3] 2L_21879057_SNP [dm6]	G	A	2.941e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8371767	2R_8371767_SNP [dm3] 2R_12484262_SNP [dm6]	T	A	2.947e^-4	0.713	INTRON Dh44-R2
2R	12696827	2R_12696827_SNP [dm3] 2R_16809322_SNP [dm6]	C	A	2.950e^-4	0.713	INTERGENIC
2L	22200079	2L_22200079_SNP [dm3] 2L_22200079_SNP [dm6]	T	A	2.953e^-4	0.713	INTRON Ir40a	transposable element FlyBase
2R	9857517	2R_9857517_SNP [dm3] 2R_13970012_SNP [dm6]	C	A	2.953e^-4	0.713	SYNONYMOUS_CODING St4 DOWNSTREAM Aats-phe	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	15995430	X_15995430_INS [dm3] X_16101397_INS [dm6]	A	AGAAAGA	2.953e^-4	0.713	INTRON CG42354 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16780950	3R_16780950_SNP [dm3] 3R_20955228_SNP [dm6]	T	A	2.958e^-4	0.713	INTRON Atpalpha
3R	6275801	3R_6275801_SNP [dm3] 3R_10450079_SNP [dm6]	A	C	2.960e^-4	0.713	INTERGENIC
3L	8524135	3L_8524135_SNP [dm3] 3L_8531035_SNP [dm6]	G	A	2.968e^-4	0.713	SYNONYMOUS_CODING foi	TF binding site mE1_TFBS_cad
2L	18328367	2L_18328367_SNP [dm3] 2L_18328367_SNP [dm6]	C	A	2.976e^-4	0.713	INTRON Fas3
3R	20388517	3R_20388517_SNP [dm3] 3R_24562795_SNP [dm6]	G	A	2.986e^-4	0.713	SYNONYMOUS_CODING CG13624	TF binding site mE1_TFBS_cad
3R	8369890	3R_8369890_SNP [dm3] 3R_12544168_SNP [dm6]	G	T	2.986e^-4	0.713	INTRON Octbeta3R
2L	19782054	2L_19782054_SNP [dm3] 2L_19782054_SNP [dm6]	C	T	2.994e^-4	0.713	SYNONYMOUS_CODING CdGAPr	TF binding site mE1_TFBS_cad
3R	4959425	3R_4959425_SNP [dm3] 3R_9133703_SNP [dm6]	C	A	2.995e^-4	0.713	INTRON pum
3R	5600842	3R_5600842_SNP [dm3] 3R_9775120_SNP [dm6]	A	C	2.996e^-4	0.713	UPSTREAM topi & 1 other INTERGENIC
3R	13928217	3R_13928217_SNP [dm3] 3R_18102495_SNP [dm6]	G	A	2.996e^-4	0.713	INTRON sr
X	21278097	X_21278097_SNP [dm3] X_21407070_SNP [dm6]	G	T	2.996e^-4	0.713	INTERGENIC
3L	21644002	3L_21644002_SNP [dm3] 3L_21650902_SNP [dm6]	A	G	2.996e^-4	0.713	INTRON CG43980
2R	9170763	2R_9170763_SNP [dm3] 2R_13283258_SNP [dm6]	C	T	2.996e^-4	0.713	INTRON Dh31-R
3L	10530001	3L_10530001_SNP [dm3] 3L_10536901_SNP [dm6]	T	A	3.007e^-4	0.713	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18134330	X_18134330_SNP [dm3] X_18240297_SNP [dm6]	T	C	3.011e^-4	0.713	DOWNSTREAM upd2 INTERGENIC
2L	18328716	2L_18328716_SNP [dm3] 2L_18328716_SNP [dm6]	T	C	3.015e^-4	0.713	INTRON Fas3
2R	17870766	2R_17870766_SNP [dm3] 2R_21983261_SNP [dm6]	A	C	3.015e^-4	0.713	INTERGENIC
3R	26062838	3R_26062838_SNP [dm3] 3R_30237116_SNP [dm6]	T	A	3.018e^-4	0.713	UTR_3_PRIME CG43448	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15141140	2L_15141140_SNP [dm3] 2L_15141140_SNP [dm6]	G	T	3.018e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9644956	2L_9644956_SNP [dm3] 2L_9644956_SNP [dm6]	T	C	3.018e^-4	0.713	SYNONYMOUS_CODING Apoltp
3L	13549577	3L_13549577_SNP [dm3] 3L_13556477_SNP [dm6]	G	A	3.025e^-4	0.713	INTRON bru-3
2L	6100321	2L_6100321_SNP [dm3] 2L_6100321_SNP [dm6]	T	C	3.027e^-4	0.713	UPSTREAM stai INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3280292	2L_3280292_SNP [dm3] 2L_3280292_SNP [dm6]	T	C	3.028e^-4	0.713	UPSTREAM CG3332 INTRON CG3332
3L	21645131	3L_21645131_SNP [dm3] 3L_21652031_SNP [dm6]	A	T	3.043e^-4	0.713	INTRON CG43980
2L	9801177	2L_9801177_SNP [dm3] 2L_9801177_SNP [dm6]	A	T	3.043e^-4	0.713	INTRON nAChRalpha6
2L	9487588	2L_9487588_SNP [dm3] 2L_9487588_SNP [dm6]	A	G	3.048e^-4	0.713	INTERGENIC
3L	7559715	3L_7559715_SNP [dm3] 3L_7566615_SNP [dm6]	C	T	3.049e^-4	0.713	SYNONYMOUS_CODING frac INTRON frac	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	5776277	3R_5776277_SNP [dm3] 3R_9950555_SNP [dm6]	C	T	3.059e^-4	0.713	INTRON Glut4EF
3L	11146537	3L_11146537_SNP [dm3] 3L_11153437_SNP [dm6]	G	T	3.069e^-4	0.713	INTRON CG32082
3L	3946684	3L_3946684_SNP [dm3] 3L_3946684_SNP [dm6]	T	C	3.073e^-4	0.713	UTR_3_PRIME CG14982 DOWNSTREAM CG14982
X	14167632	X_14167632_SNP [dm3] X_14273599_SNP [dm6]	G	T	3.073e^-4	0.713	INTRON na	TF binding site mE1_TFBS_inv
X	21839352	X_21839352_SNP [dm3] X_22437517_SNP [dm6]	C	G	3.085e^-4	0.713	INTERGENIC
2L	2383712	2L_2383712_SNP [dm3] 2L_2383712_SNP [dm6]	C	T	3.095e^-4	0.713	SYNONYMOUS_CODING CG9870 DOWNSTREAM Eogt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5852165	3R_5852165_SNP [dm3] 3R_10026443_SNP [dm6]	C	T	3.098e^-4	0.713	INTRON Mical
3R	26817590	3R_26817590_SNP [dm3] 3R_30991868_SNP [dm6]	A	T	3.099e^-4	0.713	UTR_3_PRIME CG31007 INTRON 5-HT7
3L	16456433	3L_16456433_SNP [dm3] 3L_16463333_SNP [dm6]	T	G	3.103e^-4	0.713	INTRON CG33158	TF binding site BDTNP1_TFBS_twi
3L	4082330	3L_4082330_SNP [dm3] 3L_4082330_SNP [dm6]	C	T	3.103e^-4	0.713	INTRON Gad1
3R	5885637	3R_5885637_SNP [dm3] 3R_10059915_SNP [dm6]	T	C	3.107e^-4	0.713	UPSTREAM Npc2c DOWNSTREAM CR45205 INTERGENIC
X	21458725	X_21458725_SNP [dm3] X_21587698_SNP [dm6]	T	C	3.107e^-4	0.713	INTERGENIC
3R	12035599	3R_12035599_SNP [dm3] 3R_16209877_SNP [dm6]	T	A	3.108e^-4	0.713	UPSTREAM CR45639 & 1 other DOWNSTREAM CR45640 & 1 other INTERGENIC
2L	17584083	2L_17584083_SNP [dm3] 2L_17584083_SNP [dm6]	G	A	3.114e^-4	0.713	DOWNSTREAM CR45112 EXON CR45111
2R	7392754	2R_7392754_SNP [dm3] 2R_11505249_SNP [dm6]	A	C	3.125e^-4	0.713	INTRON inv
3R	6298008	3R_6298008_SNP [dm3] 3R_10472286_SNP [dm6]	C	T	3.126e^-4	0.713	INTERGENIC
2R	8928792	2R_8928792_SNP [dm3] 2R_13041287_SNP [dm6]	A	G	3.129e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da transposable element FlyBase
3L	1424581	3L_1424581_SNP [dm3] 3L_1424581_SNP [dm6]	A	C	3.131e^-4	0.713	INTRON Ptp61F
3R	8366716	3R_8366716_SNP [dm3] 3R_12540994_SNP [dm6]	G	C	3.137e^-4	0.713	INTRON Octbeta3R
3L	21926528	3L_21926528_SNP [dm3] 3L_21933428_SNP [dm6]	G	T	3.138e^-4	0.713	DOWNSTREAM mub INTERGENIC
X	21847158	X_21847158_SNP [dm3] X_22445322_SNP [dm6]	C	G	3.138e^-4	0.713	INTRON CG14621	TF binding site BDTNP1_TFBS_dl
3R	26278273	3R_26278273_SNP [dm3] 3R_30452551_SNP [dm6]	T	C	3.144e^-4	0.713	INTRON aralar1
X	16133838	X_16133838_SNP [dm3] X_16239805_SNP [dm6]	T	A	3.144e^-4	0.713	INTERGENIC
2R	4041276	2R_4041276_SNP [dm3] 2R_8153771_SNP [dm6]	A	G	3.146e^-4	0.713	INTRON Lpin & 1 other
3R	10518230	3R_10518230_SNP [dm3] 3R_14692508_SNP [dm6]	C	A	3.146e^-4	0.713	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8879004	3L_8879004_SNP [dm3] 3L_8885904_SNP [dm6]	A	T	3.149e^-4	0.713	INTRON dally
3L	7559211	3L_7559211_SNP [dm3] 3L_7566111_SNP [dm6]	A	G	3.155e^-4	0.713	SYNONYMOUS_CODING frac	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	9131351	2R_9131351_INS [dm3] 2R_13243846_INS [dm6]	T	TTTA	3.155e^-4	0.713	DOWNSTREAM CR45278 INTERGENIC
2L	16802423	2L_16802423_SNP [dm3] 2L_16802423_SNP [dm6]	A	G	3.166e^-4	0.713	SYNONYMOUS_CODING CG13280 DOWNSTREAM Ugt36Bc
2L	16802426	2L_16802426_SNP [dm3] 2L_16802426_SNP [dm6]	G	A	3.166e^-4	0.713	SYNONYMOUS_CODING CG13280 DOWNSTREAM Ugt36Bc
3R	25155781	3R_25155781_SNP [dm3] 3R_29330059_SNP [dm6]	G	T	3.166e^-4	0.713	INTERGENIC
3R	4952758	3R_4952758_SNP [dm3] 3R_9127036_SNP [dm6]	T	G	3.167e^-4	0.713	INTRON pum
3R	12035624	3R_12035624_SNP [dm3] 3R_16209902_SNP [dm6]	G	C	3.168e^-4	0.713	UPSTREAM CR45639 & 1 other DOWNSTREAM CR45640 & 1 other INTERGENIC
2R	15669170	2R_15669170_SNP [dm3] 2R_19781665_SNP [dm6]	G	A	3.169e^-4	0.713	INTERGENIC
3L	15605512	3L_15605512_SNP [dm3] 3L_15612412_SNP [dm6]	G	C	3.173e^-4	0.713	SYNONYMOUS_CODING CG13449 UPSTREAM CG13449 DOWNSTREAM comm3
2L	16493369	2L_16493369_SNP [dm3] 2L_16493369_SNP [dm6]	A	G	3.173e^-4	0.713	INTRON Tpr2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	1347398	3L_1347398_SNP [dm3] 3L_1347398_SNP [dm6]	T	C	3.188e^-4	0.713	INTRON Ptp61F	TF binding site BDTNP1_TFBS_prd
2R	9112707	2R_9112707_SNP [dm3] 2R_13225202_SNP [dm6]	G	A	3.188e^-4	0.713	UPSTREAM Dp & 1 other INTRON Dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9951717	2L_9951717_SNP [dm3] 2L_9951717_SNP [dm6]	G	A	3.203e^-4	0.713	DOWNSTREAM CG13126 INTERGENIC
2L	12930323	2L_12930323_SNP [dm3] 2L_12930323_SNP [dm6]	A	C	3.207e^-4	0.713	DOWNSTREAM ACXE INTERGENIC
3R	5891180	3R_5891180_SNP [dm3] 3R_10065458_SNP [dm6]	C	G	3.212e^-4	0.713	DOWNSTREAM CG33631 INTERGENIC
2R	14432000	2R_14432000_SNP [dm3] 2R_18544495_SNP [dm6]	C	A	3.214e^-4	0.713	SYNONYMOUS_CODING Rgk2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3500197	2L_3500197_SNP [dm3] 2L_3500197_SNP [dm6]	C	T	3.217e^-4	0.713	SYNONYMOUS_CODING tim DOWNSTREAM tim
X	5907817	X_5907817_SNP [dm3] X_6013784_SNP [dm6]	T	A	3.218e^-4	0.713	UPSTREAM mab-21 EXON CR44499	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	5850542	3R_5850542_SNP [dm3] 3R_10024820_SNP [dm6]	A	T	3.231e^-4	0.713	INTRON Mical & 1 other
3L	16503927	3L_16503927_SNP [dm3] 3L_16510827_SNP [dm6]	T	A	3.237e^-4	0.713	INTRON CG43373
2L	11010372	2L_11010372_SNP [dm3] 2L_11010372_SNP [dm6]	G	T	3.242e^-4	0.713	SYNONYMOUS_CODING Art8 UTR_3_PRIME Nup154 UPSTREAM dUTPase DOWNSTREAM Nup154	TF binding site mE1_TFBS_sens
2R	15464548	2R_15464548_SNP [dm3] 2R_19577043_SNP [dm6]	G	C	3.242e^-4	0.713	INTRON sm
3L	2124435	3L_2124435_SNP [dm3] 3L_2124435_SNP [dm6]	T	A	3.243e^-4	0.713	SYNONYMOUS_CODING zormin INTRON zormin
2R	20345607	2R_20345607_SNP [dm3] 2R_24458084_SNP [dm6]	A	T	3.252e^-4	0.713	INTRON CG13579
2R	20334479	2R_20334479_SNP [dm3] 2R_24446956_SNP [dm6]	A	G	3.260e^-4	0.713	DOWNSTREAM CG3483 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	14902401	2L_14902401_SNP [dm3] 2L_14902401_SNP [dm6]	T	A	3.262e^-4	0.713	INTERGENIC
3R	18480164	3R_18480164_SNP [dm3] 3R_22654442_SNP [dm6]	C	T	3.266e^-4	0.713	INTRON CG45058
3R	5770045	3R_5770045_SNP [dm3] 3R_9944323_SNP [dm6]	C	G	3.267e^-4	0.713	UTR_3_PRIME Glut4EF INTRON Glut4EF
2R	16683655	2R_16683655_SNP [dm3] 2R_20796150_SNP [dm6]	T	C	3.267e^-4	0.713	INTERGENIC
2L	22240045	2L_22240045_SNP [dm3] 2L_22240045_SNP [dm6]	A	G	3.276e^-4	0.713	SYNONYMOUS_CODING CG3262 UTR_5_PRIME CG3262 UPSTREAM CR43765	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16361074	2R_16361074_SNP [dm3] 2R_20473569_SNP [dm6]	C	T	3.279e^-4	0.713	INTRON CG12484
2R	16361091	2R_16361091_SNP [dm3] 2R_20473586_SNP [dm6]	A	C	3.279e^-4	0.713	INTRON CG12484
2L	22067559	2L_22067559_SNP [dm3] 2L_22067559_SNP [dm6]	A	G	3.286e^-4	0.713	DOWNSTREAM CR31700 INTERGENIC	transposable element FlyBase
3L	10861556	3L_10861556_SNP [dm3] 3L_10868456_SNP [dm6]	A	T	3.289e^-4	0.713	INTRON tna
2R	17128682	2R_17128682_SNP [dm3] 2R_21241177_SNP [dm6]	A	G	3.292e^-4	0.713	INTRON ASPP
3R	19368056	3R_19368056_DEL [dm3] 3R_23542334_DEL [dm6]	TGTTGT	T	3.297e^-4	0.713	INTERGENIC
2R	17690527	2R_17690527_SNP [dm3] 2R_21803022_SNP [dm6]	A	T	3.298e^-4	0.713	UPSTREAM CR9284 INTERGENIC
3R	6269077	3R_6269077_DEL [dm3] 3R_10443355_DEL [dm6]	AA	A	3.300e^-4	0.713	INTERGENIC
3R	24616644	3R_24616644_SNP [dm3] 3R_28790922_SNP [dm6]	T	C	3.314e^-4	0.713	NON_SYNONYMOUS_CODING intr DOWNSTREAM CG34295
3R	16295341	3R_16295341_SNP [dm3] 3R_20469619_SNP [dm6]	C	A	3.315e^-4	0.713	INTRON Gfrl
3R	20811916	3R_20811916_SNP [dm3] 3R_24986194_SNP [dm6]	A	T	3.316e^-4	0.713	INTRON tnc
X	21801905	X_21801905_INS [dm3] X_22400072_INS [dm6]	G	GCGATAGCAGCTCCTCGGAG...	3.323e^-4	0.713	INTERGENIC	transposable element FlyBase
2R	15378585	2R_15378585_SNP [dm3] 2R_19491080_SNP [dm6]	G	A	3.329e^-4	0.713	SYNONYMOUS_CODING Oseg6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_inv mE1_TFBS_sens
3L	21487717	3L_21487717_SNP [dm3] 3L_21494617_SNP [dm6]	T	C	3.335e^-4	0.713	NON_SYNONYMOUS_CODING Hr78 DOWNSTREAM CG7519
2L	2398607	2L_2398607_SNP [dm3] 2L_2398607_SNP [dm6]	A	C	3.336e^-4	0.713	INTRON VGlut
2R	9249111	2R_9249111_SNP [dm3] 2R_13361606_SNP [dm6]	A	G	3.340e^-4	0.713	DOWNSTREAM CR45312 INTERGENIC
2R	4930720	2R_4930720_SNP [dm3] 2R_9043215_SNP [dm6]	G	A	3.340e^-4	0.713	SYNONYMOUS_CODING PPO2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	5992109	3R_5992109_SNP [dm3] 3R_10166387_SNP [dm6]	C	T	3.342e^-4	0.713	INTRON Best1
3R	4825559	3R_4825559_SNP [dm3] 3R_8999837_SNP [dm6]	A	C	3.343e^-4	0.713	INTRON CG31100
3R	11859120	3R_11859120_SNP [dm3] 3R_16033398_SNP [dm6]	G	T	3.347e^-4	0.713	INTRON pnr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	1862418	2L_1862418_SNP [dm3] 2L_1862418_SNP [dm6]	G	A	3.347e^-4	0.713	INTRON CG31663
2L	18330146	2L_18330146_SNP [dm3] 2L_18330146_SNP [dm6]	A	C	3.368e^-4	0.713	INTRON Fas3
2R	4546954	2R_4546954_SNP [dm3] 2R_8659449_SNP [dm6]	A	G	3.369e^-4	0.713	INTRON ptc	TF binding site mE1_TFBS_cad
X	771127	X_771127_SNP [dm3] X_877094_SNP [dm6]	T	C	3.383e^-4	0.713	DOWNSTREAM CG11664 INTRON CG43867
2L	12687469	2L_12687469_SNP [dm3] 2L_12687469_SNP [dm6]	G	T	3.385e^-4	0.713	INTERGENIC
2L	3823089	2L_3823089_SNP [dm3] 2L_3823089_SNP [dm6]	A	C	3.388e^-4	0.713	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	11824912	3R_11824912_SNP [dm3] 3R_15999190_SNP [dm6]	G	T	3.390e^-4	0.713	INTRON srp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1645300	3L_1645300_SNP [dm3] 3L_1645300_SNP [dm6]	A	T	3.391e^-4	0.713	UPSTREAM CG13919 & 1 other DOWNSTREAM CG17249 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1645305	3L_1645305_SNP [dm3] 3L_1645305_SNP [dm6]	G	C	3.391e^-4	0.713	UPSTREAM CG13919 & 1 other DOWNSTREAM CG17249 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1645306	3L_1645306_SNP [dm3] 3L_1645306_SNP [dm6]	C	T	3.391e^-4	0.713	UPSTREAM CG13919 & 1 other DOWNSTREAM CG17249 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1645311	3L_1645311_DEL [dm3] 3L_1645311_DEL [dm6]	CA	C	3.391e^-4	0.713	UPSTREAM CG13919 & 1 other DOWNSTREAM CG17249 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	19310983	2R_19310983_SNP [dm3] 2R_23423460_SNP [dm6]	C	T	3.392e^-4	0.713	UPSTREAM CG9815 INTRON CG9815
2R	10925619	2R_10925619_SNP [dm3] 2R_15038114_SNP [dm6]	A	G	3.401e^-4	0.713	INTRON hbs
3R	26817678	3R_26817678_SNP [dm3] 3R_30991956_SNP [dm6]	G	A	3.402e^-4	0.713	SYNONYMOUS_CODING CG31007 INTRON 5-HT7
3R	14987850	3R_14987850_SNP [dm3] 3R_19162128_SNP [dm6]	T	C	3.408e^-4	0.713	SYNONYMOUS_CODING CG42358 UTR_5_PRIME CG42359	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	18124583	X_18124583_SNP [dm3] X_18230550_SNP [dm6]	C	T	3.425e^-4	0.713	INTERGENIC
X	18124680	X_18124680_SNP [dm3] X_18230647_SNP [dm6]	A	T	3.425e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	18126210	X_18126210_SNP [dm3] X_18232177_SNP [dm6]	C	T	3.425e^-4	0.713	INTERGENIC
X	18131185	X_18131185_SNP [dm3] X_18237152_SNP [dm6]	T	G	3.425e^-4	0.713	INTERGENIC
X	18131200	X_18131200_SNP [dm3] X_18237167_SNP [dm6]	G	C	3.425e^-4	0.713	INTERGENIC
X	18138217	X_18138217_SNP [dm3] X_18244184_SNP [dm6]	T	A	3.425e^-4	0.713	UPSTREAM upd2 DOWNSTREAM CR45607 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	20269047	X_20269047_SNP [dm3] X_20398020_SNP [dm6]	G	T	3.427e^-4	0.713	INTRON HERC2	transposable element FlyBase
2R	15668943	2R_15668943_SNP [dm3] 2R_19781438_SNP [dm6]	C	T	3.427e^-4	0.713	INTERGENIC
3L	1877196	3L_1877196_SNP [dm3] 3L_1877196_SNP [dm6]	A	C	3.428e^-4	0.713	UPSTREAM dre4 INTRON CG13937	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	11223238	2L_11223238_SNP [dm3] 2L_11223238_SNP [dm6]	G	A	3.430e^-4	0.713	INTRON ab
3R	5767031	3R_5767031_SNP [dm3] 3R_9941309_SNP [dm6]	C	T	3.440e^-4	0.713	INTRON Glut4EF
2R	19282020	2R_19282020_SNP [dm3] 2R_23394497_SNP [dm6]	C	A	3.443e^-4	0.713	INTRON CG3530	TF binding site mE1_TFBS_chinmo
X	18124266	X_18124266_SNP [dm3] X_18230233_SNP [dm6]	T	A	3.444e^-4	0.713	INTERGENIC
X	13473366	X_13473366_SNP [dm3] X_13579333_SNP [dm6]	G	C	3.456e^-4	0.713	INTRON Tango13
3R	6425148	3R_6425148_SNP [dm3] 3R_10599426_SNP [dm6]	A	T	3.458e^-4	0.713	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	12035607	3R_12035607_DEL [dm3] 3R_16209885_DEL [dm6]	ATC	A	3.459e^-4	0.713	UPSTREAM CR45639 & 1 other DOWNSTREAM CR45640 & 1 other INTERGENIC
3L	1700696	3L_1700696_SNP [dm3] 3L_1700696_SNP [dm6]	T	A	3.477e^-4	0.713	DOWNSTREAM CG13931 INTRON CG7991	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	7406564	2R_7406564_SNP [dm3] 2R_11519059_SNP [dm6]	T	G	3.482e^-4	0.713	INTERGENIC
3L	21635539	3L_21635539_SNP [dm3] 3L_21642439_SNP [dm6]	C	A	3.485e^-4	0.713	UTR_3_PRIME Atox1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	24153958	3R_24153958_SNP [dm3] 3R_28328236_SNP [dm6]	A	T	3.494e^-4	0.713	UTR_5_PRIME larp INTRON larp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	16491114	2L_16491114_SNP [dm3] 2L_16491114_SNP [dm6]	T	G	3.497e^-4	0.713	UPSTREAM Tpr2 & 1 other DOWNSTREAM CG4580 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_Ubx
3R	11269837	3R_11269837_SNP [dm3] 3R_15444115_SNP [dm6]	A	G	3.500e^-4	0.713	SYNONYMOUS_CODING AdamTS-A	TF binding site mE1_TFBS_cad
X	21801897	X_21801897_SNP [dm3] X_22400064_SNP [dm6]	A	C	3.519e^-4	0.713	INTERGENIC	transposable element FlyBase
X	21801898	X_21801898_SNP [dm3] X_22400065_SNP [dm6]	C	A	3.519e^-4	0.713	INTERGENIC	transposable element FlyBase
3R	19570657	3R_19570657_SNP [dm3] 3R_23744935_SNP [dm6]	A	G	3.519e^-4	0.713	INTRON Hmgcr
3L	410399	3L_410399_SNP [dm3] 3L_410399_SNP [dm6]	C	A	3.520e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16278577	3R_16278577_SNP [dm3] 3R_20452855_SNP [dm6]	G	A	3.521e^-4	0.713	INTRON Gfrl
2L	21909546	2L_21909546_DEL [dm3] 2L_21909546_DEL [dm6]	ACATCGACAGACG...	A	3.522e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18134206	X_18134206_SNP [dm3] X_18240173_SNP [dm6]	A	T	3.528e^-4	0.713	DOWNSTREAM upd2 INTERGENIC
2L	13917197	2L_13917197_SNP [dm3] 2L_13917197_SNP [dm6]	G	A	3.528e^-4	0.713	SYNONYMOUS_CODING Ance-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8845900	2L_8845900_SNP [dm3] 2L_8845900_SNP [dm6]	A	T	3.529e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11251263	2R_11251263_SNP [dm3] 2R_15363758_SNP [dm6]	T	A	3.529e^-4	0.713	INTRON unc-5
3R	12035679	3R_12035679_SNP [dm3] 3R_16209957_SNP [dm6]	T	C	3.532e^-4	0.713	UPSTREAM CR45638 DOWNSTREAM CR45640 & 1 other INTERGENIC
3L	2546783	3L_2546783_SNP [dm3] 3L_2546783_SNP [dm6]	C	T	3.533e^-4	0.713	INTRON Spn
3L	2546786	3L_2546786_SNP [dm3] 3L_2546786_SNP [dm6]	A	C	3.533e^-4	0.713	INTRON Spn
3L	5242622	3L_5242622_INS [dm3] 3L_5249522_INS [dm6]	C	CCAAAGACACTAGTGTCTTT...	3.534e^-4	0.713	INTRON shep
3L	18994463	3L_18994463_SNP [dm3] 3L_19001363_SNP [dm6]	G	C	3.535e^-4	0.713	NON_SYNONYMOUS_CODING CG18136 UPSTREAM CG3808
X	17711950	X_17711950_SNP [dm3] X_17817917_SNP [dm6]	A	T	3.540e^-4	0.713	INTERGENIC
3L	7559205	3L_7559205_SNP [dm3] 3L_7566105_SNP [dm6]	T	C	3.543e^-4	0.713	SYNONYMOUS_CODING frac	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	7067580	2L_7067580_SNP [dm3] 2L_7067580_SNP [dm6]	T	G	3.543e^-4	0.713	UPSTREAM CG11289 INTERGENIC
3L	8645168	3L_8645168_SNP [dm3] 3L_8652068_SNP [dm6]	C	T	3.543e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	5887597	3R_5887597_SNP [dm3] 3R_10061875_SNP [dm6]	G	T	3.548e^-4	0.713	UPSTREAM CG33630 DOWNSTREAM Npc2c EXON CR45205 & 1 other
2R	19448091	2R_19448091_SNP [dm3] 2R_23560568_SNP [dm6]	G	A	3.549e^-4	0.713	UTR_5_PRIME Pi3K59F DOWNSTREAM ItgalphaPS5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9141759	2R_9141759_SNP [dm3] 2R_13254254_SNP [dm6]	G	T	3.552e^-4	0.713	UTR_5_PRIME CG4714 DOWNSTREAM CR44343	TF binding site mE1_TFBS_cad
3L	21646672	3L_21646672_DEL [dm3] 3L_21653572_DEL [dm6]	GGTTGAACGGAC...	G	3.556e^-4	0.713	INTRON CG43980	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	21667647	3L_21667647_SNP [dm3] 3L_21674547_SNP [dm6]	C	A	3.556e^-4	0.713	UTR_3_PRIME CG7158 DOWNSTREAM CG11249	TF binding site mE1_TFBS_cad
3R	23441360	3R_23441360_SNP [dm3] 3R_27615638_SNP [dm6]	T	G	3.566e^-4	0.713	INTRON Tusp
2L	9868398	2L_9868398_SNP [dm3] 2L_9868398_SNP [dm6]	T	A	3.569e^-4	0.713	INTRON nAChRalpha6
3R	6109922	3R_6109922_SNP [dm3] 3R_10284200_SNP [dm6]	G	T	3.576e^-4	0.713	UPSTREAM CG43143 INTRON CG43143	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	5885944	3R_5885944_SNP [dm3] 3R_10060222_SNP [dm6]	C	A	3.592e^-4	0.713	UPSTREAM Npc2c DOWNSTREAM CR45205 INTERGENIC
3R	13139315	3R_13139315_DEL [dm3] 3R_17313593_DEL [dm6]	AC	A	3.593e^-4	0.713	INTERGENIC
X	2556730	X_2556730_SNP [dm3] X_2662697_SNP [dm6]	A	G	3.596e^-4	0.713	INTRON sgg
3R	7280728	3R_7280728_SNP [dm3] 3R_11455006_SNP [dm6]	T	A	3.596e^-4	0.713	UPSTREAM PGRP-LB INTRON CG17230 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	21634735	3L_21634735_SNP [dm3] 3L_21641635_SNP [dm6]	G	T	3.597e^-4	0.713	DOWNSTREAM CG32445 INTRON Atox1
2R	3884512	2R_3884512_SNP [dm3] 2R_7997007_SNP [dm6]	A	G	3.597e^-4	0.713	INTRON Hey
2L	19474012	2L_19474012_SNP [dm3] 2L_19474012_SNP [dm6]	G	A	3.601e^-4	0.713	INTERGENIC
3L	7257654	3L_7257654_SNP [dm3] 3L_7264554_SNP [dm6]	G	T	3.604e^-4	0.713	UPSTREAM CG14830 INTERGENIC
3L	15605718	3L_15605718_SNP [dm3] 3L_15612618_SNP [dm6]	C	T	3.607e^-4	0.713	UPSTREAM CG13449 DOWNSTREAM comm3 INTRON CG13449
2R	15394452	2R_15394452_SNP [dm3] 2R_19506947_SNP [dm6]	A	G	3.607e^-4	0.713	UPSTREAM tRNA:H:56E INTERGENIC
2R	12022190	2R_12022190_SNP [dm3] 2R_16134685_SNP [dm6]	T	A	3.612e^-4	0.713	INTRON spin
2L	8250512	2L_8250512_SNP [dm3] 2L_8250512_SNP [dm6]	G	A	3.613e^-4	0.713	INTRON CG8086
3R	12035687	3R_12035687_SNP [dm3] 3R_16209965_SNP [dm6]	T	C	3.614e^-4	0.713	UPSTREAM CR45638 DOWNSTREAM CR45640 & 1 other INTERGENIC
2L	646500	2L_646500_SNP [dm3] 2L_646500_SNP [dm6]	C	A	3.623e^-4	0.713	INTRON ds
3R	6639489	3R_6639489_SNP [dm3] 3R_10813767_SNP [dm6]	T	A	3.626e^-4	0.713	UTR_3_PRIME CG14693 UPSTREAM CG14693 INTRON CG14693
3R	12396245	3R_12396245_SNP [dm3] 3R_16570523_SNP [dm6]	G	A	3.627e^-4	0.713	UTR_3_PRIME CG42342 UPSTREAM CG14891 INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	7278960	3R_7278960_SNP [dm3] 3R_11453238_SNP [dm6]	G	A	3.630e^-4	0.713	SYNONYMOUS_CODING PGRP-LB INTRON CG17230	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20269038	X_20269038_SNP [dm3] X_20398011_SNP [dm6]	C	A	3.630e^-4	0.713	INTRON HERC2	transposable element FlyBase
2R	3554713	2R_3554713_SNP [dm3] 2R_7667208_SNP [dm6]	A	C	3.636e^-4	0.713	SYNONYMOUS_CODING CG2064 DOWNSTREAM CG12042
3L	1676761	3L_1676761_SNP [dm3] 3L_1676761_SNP [dm6]	T	C	3.637e^-4	0.713	INTRON CG7991
X	3555390	X_3555390_SNP [dm3] X_3661357_SNP [dm6]	A	C	3.637e^-4	0.713	INTRON AstA-R1
2L	21805871	2L_21805871_SNP [dm3] 2L_21805871_SNP [dm6]	G	C	3.641e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	10821610	2R_10821610_SNP [dm3] 2R_14934105_SNP [dm6]	G	T	3.650e^-4	0.713	UPSTREAM CG10253 DOWNSTREAM CG12853 INTRON CG10253	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	12035630	3R_12035630_SNP [dm3] 3R_16209908_SNP [dm6]	A	T	3.660e^-4	0.713	UPSTREAM CR45639 & 1 other DOWNSTREAM CR45640 & 1 other INTERGENIC
3L	15605755	3L_15605755_SNP [dm3] 3L_15612655_SNP [dm6]	G	A	3.660e^-4	0.713	UPSTREAM CG13449 DOWNSTREAM comm3 INTRON CG13449
X	14073579	X_14073579_SNP [dm3] X_14179546_SNP [dm6]	A	C	3.665e^-4	0.713	INTERGENIC
2R	10676748	2R_10676748_SNP [dm3] 2R_14789243_SNP [dm6]	G	C	3.667e^-4	0.713	INTRON kn	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	5300052	2R_5300052_SNP [dm3] 2R_9412547_SNP [dm6]	T	C	3.677e^-4	0.713	INTRON wun	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	7589492	X_7589492_SNP [dm3] X_7695459_SNP [dm6]	G	C	3.684e^-4	0.713	UPSTREAM CHES-1-like INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
X	20269030	X_20269030_SNP [dm3] X_20398003_SNP [dm6]	T	C	3.685e^-4	0.713	INTRON HERC2	transposable element FlyBase
X	14076421	X_14076421_SNP [dm3] X_14182388_SNP [dm6]	C	T	3.686e^-4	0.713	SYNONYMOUS_CODING CG11584	TF binding site mE1_TFBS_chinmo
3R	16294225	3R_16294225_SNP [dm3] 3R_20468503_SNP [dm6]	G	A	3.693e^-4	0.713	INTRON Gfrl
3R	6281953	3R_6281953_SNP [dm3] 3R_10456231_SNP [dm6]	C	A	3.693e^-4	0.713	INTERGENIC
X	7611488	X_7611488_SNP [dm3] X_7717455_SNP [dm6]	C	T	3.694e^-4	0.713	INTRON CG15478
3L	6840199	3L_6840199_SNP [dm3] 3L_6847099_SNP [dm6]	C	T	3.701e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3L	2546665	3L_2546665_SNP [dm3] 3L_2546665_SNP [dm6]	A	G	3.704e^-4	0.713	INTRON Spn
3L	15863963	3L_15863963_SNP [dm3] 3L_15870863_SNP [dm6]	C	T	3.711e^-4	0.713	INTRON pHCl	TF binding site mE1_TFBS_cad
3R	25204626	3R_25204626_SNP [dm3] 3R_29378904_SNP [dm6]	C	T	3.715e^-4	0.713	INTRON Ptp99A
X	20443347	X_20443347_INS [dm3] X_20572320_INS [dm6]	T	TT	3.720e^-4	0.713	INTERGENIC
2L	21786168	2L_21786168_DEL [dm3] 2L_21786168_DEL [dm6]	TGTTTTGATTTTTGTACTAT...	T	3.725e^-4	0.713	INTRON CG31612
3R	4949582	3R_4949582_SNP [dm3] 3R_9123860_SNP [dm6]	T	C	3.730e^-4	0.713	INTRON pum
X	5927260	X_5927260_SNP [dm3] X_6033227_SNP [dm6]	T	C	3.741e^-4	0.713	INTERGENIC
3R	14616564	3R_14616564_SNP [dm3] 3R_18790842_SNP [dm6]	T	C	3.745e^-4	0.713	INTRON CG7720
2L	19474055	2L_19474055_DEL [dm3] 2L_19474055_DEL [dm6]	TCT	T	3.745e^-4	0.713	INTERGENIC
3R	5868975	3R_5868975_SNP [dm3] 3R_10043253_SNP [dm6]	A	G	3.754e^-4	0.713	UPSTREAM CG3909 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	10403916	3L_10403916_SNP [dm3] 3L_10410816_SNP [dm6]	A	T	3.755e^-4	0.713	DOWNSTREAM CR44543 INTERGENIC
2R	10441492	2R_10441492_SNP [dm3] 2R_14553987_SNP [dm6]	G	A	3.758e^-4	0.713	INTRON ttv & 1 other
3L	1405894	3L_1405894_SNP [dm3] 3L_1405894_SNP [dm6]	A	G	3.769e^-4	0.713	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	5743499	X_5743499_SNP [dm3] X_5849466_SNP [dm6]	A	C	3.772e^-4	0.713	INTERGENIC
3R	4824360	3R_4824360_SNP [dm3] 3R_8998638_SNP [dm6]	A	C	3.773e^-4	0.713	SYNONYMOUS_CODING CG11977 INTRON CG31100
2L	13446728	2L_13446728_SNP [dm3] 2L_13446728_SNP [dm6]	A	T	3.774e^-4	0.713	DOWNSTREAM Hsp60D INTRON CG42784
3R	10838880	3R_10838880_SNP [dm3] 3R_15013158_SNP [dm6]	C	T	3.775e^-4	0.713	INTERGENIC
2L	9942004	2L_9942004_SNP [dm3] 2L_9942004_SNP [dm6]	C	A	3.776e^-4	0.713	SYNONYMOUS_CODING CG5853 UTR_3_PRIME CG4619	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14432009	2R_14432009_SNP [dm3] 2R_18544504_SNP [dm6]	A	G	3.781e^-4	0.713	SYNONYMOUS_CODING Rgk2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17870707	2R_17870707_SNP [dm3] 2R_21983202_SNP [dm6]	T	C	3.783e^-4	0.713	INTERGENIC
3L	2153586	3L_2153586_SNP [dm3] 3L_2153586_SNP [dm6]	A	C	3.787e^-4	0.713	UTR_3_PRIME CG15822
3R	4331830	3R_4331830_SNP [dm3] 3R_8506108_SNP [dm6]	C	T	3.788e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_cad
3R	19776867	3R_19776867_SNP [dm3] 3R_23951145_SNP [dm6]	G	A	3.790e^-4	0.713	DOWNSTREAM Aats-glupro INTERGENIC
3L	21619817	3L_21619817_SNP [dm3] 3L_21626717_SNP [dm6]	A	T	3.799e^-4	0.713	INTRON CG11306	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	21641677	3L_21641677_SNP [dm3] 3L_21648577_SNP [dm6]	G	A	3.799e^-4	0.713	INTRON CG43980
X	14184427	X_14184427_SNP [dm3] X_14290394_SNP [dm6]	T	A	3.800e^-4	0.713	INTERGENIC
3L	7853844	3L_7853844_SNP [dm3] 3L_7860744_SNP [dm6]	A	T	3.802e^-4	0.713	INTRON Pdp1
3R	24774518	3R_24774518_SNP [dm3] 3R_28948796_SNP [dm6]	C	A	3.802e^-4	0.713	INTRON CG14521	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9583087	2L_9583087_SNP [dm3] 2L_9583087_SNP [dm6]	A	T	3.804e^-4	0.713	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	16294229	3R_16294229_SNP [dm3] 3R_20468507_SNP [dm6]	C	T	3.805e^-4	0.713	INTRON Gfrl
3R	16193152	3R_16193152_SNP [dm3] 3R_20367430_SNP [dm6]	A	C	3.805e^-4	0.713	INTERGENIC
3R	4930054	3R_4930054_DEL [dm3] 3R_9104332_DEL [dm6]	TTTATC	T	3.809e^-4	0.713	INTRON pum

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.868e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.06031

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	7.7122	0.0212
In_3R_Mo	5.6166	0.0603

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2029 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	3268396	3R_3268396_SNP [dm3] 3R_7442674_SNP [dm6]	T	A	2.883e^-6	0.889	DOWNSTREAM CG14598 INTERGENIC
3L	2894083	3L_2894083_DEL [dm3] 3L_2894083_DEL [dm6]	TT	G	3.029e^-6	0.889	UPSTREAM Shab INTERGENIC
2R	16961944	2R_16961944_DEL [dm3] 2R_21074439_DEL [dm6]	TAAATA	T	5.731e^-6	0.889	INTRON Treh
2L	15307291	2L_15307291_SNP [dm3] 2L_15307291_SNP [dm6]	G	T	6.375e^-6	0.889	INTERGENIC
3L	9715826	3L_9715826_SNP [dm3] 3L_9722726_SNP [dm6]	A	G	6.904e^-6	0.889	SYNONYMOUS_CODING nbs UPSTREAM defl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	901595	2R_901595_INS [dm3] 2R_5014090_INS [dm6]	T	TAT	7.607e^-6	0.889	INTRON Ir41a
2R	17725771	2R_17725771_SNP [dm3] 2R_21838266_SNP [dm6]	C	T	7.735e^-6	0.889	NON_SYNONYMOUS_CODING CG4372
2R	16923351	2R_16923351_DEL [dm3] 2R_21035846_DEL [dm6]	TT	T	8.261e^-6	0.889	INTERGENIC
2R	19564911	2R_19564911_SNP [dm3] 2R_23677388_SNP [dm6]	T	A	8.967e^-6	0.889	INTRON Pde8	TF binding site mE1_TFBS_cad
2L	7842500	2L_7842500_SNP [dm3] 2L_7842500_SNP [dm6]	G	A	9.411e^-6	0.889	INTERGENIC
3R	16988813	3R_16988813_SNP [dm3] 3R_21163091_SNP [dm6]	C	G	9.422e^-6	0.889	UPSTREAM CG5810 INTRON SNF4Agamma
3L	4652284	3L_4652284_SNP [dm3] 3L_4652284_SNP [dm6]	T	G	9.448e^-6	0.889	INTRON axo
3L	9715763	3L_9715763_SNP [dm3] 3L_9722663_SNP [dm6]	C	T	9.479e^-6	0.889	NON_SYNONYMOUS_CODING nbs UPSTREAM defl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	15307422	2L_15307422_SNP [dm3] 2L_15307422_SNP [dm6]	G	C	1.002e^-5	0.889	INTERGENIC
2R	5509260	2R_5509260_SNP [dm3] 2R_9621755_SNP [dm6]	G	C	1.139e^-5	0.889	UPSTREAM mir-307a DOWNSTREAM mir-307b INTRON Mmp2
2L	9570400	2L_9570400_SNP [dm3] 2L_9570400_SNP [dm6]	A	G	1.385e^-5	0.889	UTR_5_PRIME CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	1.418e^-5	0.889	EXON CR44950
X	18389071	X_18389071_SNP [dm3] X_18495038_SNP [dm6]	T	C	1.469e^-5	0.889	UPSTREAM CG15043 DOWNSTREAM GalNAc-T2 & 1 other INTERGENIC
2L	8807137	2L_8807137_SNP [dm3] 2L_8807137_SNP [dm6]	T	C	1.525e^-5	0.889	INTERGENIC
3L	11318516	3L_11318516_SNP [dm3] 3L_11325416_SNP [dm6]	T	C	1.531e^-5	0.889	UPSTREAM CR44723 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
X	16539871	X_16539871_INS [dm3] X_16645838_INS [dm6]	T	TT	1.558e^-5	0.889	INTRON mthl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	18328268	2L_18328268_SNP [dm3] 2L_18328268_SNP [dm6]	A	T	1.685e^-5	0.889	INTRON Fas3
X	19871242	X_19871242_SNP [dm3] X_19977209_SNP [dm6]	A	G	1.698e^-5	0.889	INTERGENIC
X	17078271	X_17078271_SNP [dm3] X_17184238_SNP [dm6]	T	C	1.760e^-5	0.889	UPSTREAM CR44026 INTRON baz
2L	13610291	2L_13610291_SNP [dm3] 2L_13610291_SNP [dm6]	C	T	1.848e^-5	0.889	NON_SYNONYMOUS_CODING kuz DOWNSTREAM mir-2489
2L	5395011	2L_5395011_SNP [dm3] 2L_5395011_SNP [dm6]	C	T	1.852e^-5	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	9716369	3L_9716369_SNP [dm3] 3L_9723269_SNP [dm6]	T	C	1.890e^-5	0.889	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14370112	3L_14370112_SNP [dm3] 3L_14377012_SNP [dm6]	C	A	1.915e^-5	0.889	INTERGENIC
2R	16856340	2R_16856340_SNP [dm3] 2R_20968835_SNP [dm6]	A	C	2.004e^-5	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9570147	2L_9570147_INS [dm3] 2L_9570147_INS [dm6]	A	AC	2.059e^-5	0.889	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16133838	X_16133838_SNP [dm3] X_16239805_SNP [dm6]	T	A	2.109e^-5	0.889	INTERGENIC
2L	18328109	2L_18328109_SNP [dm3] 2L_18328109_SNP [dm6]	C	G	2.148e^-5	0.889	INTRON Fas3
2L	9570296	2L_9570296_SNP [dm3] 2L_9570296_SNP [dm6]	A	C	2.172e^-5	0.889	UTR_5_PRIME CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	22020382	2L_22020382_SNP [dm3] 2L_22020382_SNP [dm6]	G	T	2.198e^-5	0.889	DOWNSTREAM CR33987 INTRON tio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	9570169	2L_9570169_SNP [dm3] 2L_9570169_SNP [dm6]	A	G	2.333e^-5	0.889	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9202302	3L_9202302_SNP [dm3] 3L_9209202_SNP [dm6]	T	G	2.490e^-5	0.889	UPSTREAM Slc45-1 INTERGENIC
3R	1592708	3R_1592708_SNP [dm3] 3R_5766986_SNP [dm6]	A	T	2.533e^-5	0.889	INTRON CG2082	TF binding site mE1_TFBS_cad
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	2.544e^-5	0.889	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5346953	2L_5346953_SNP [dm3] 2L_5346953_SNP [dm6]	T	A	2.573e^-5	0.889	SYNONYMOUS_CODING nompC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18885261	2L_18885261_SNP [dm3] 2L_18885261_SNP [dm6]	C	G	2.588e^-5	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	12571601	2L_12571601_SNP [dm3] 2L_12571601_SNP [dm6]	G	A	2.592e^-5	0.889	UPSTREAM CR44598 EXON CR44597
2L	21802210	2L_21802210_SNP [dm3] 2L_21802210_SNP [dm6]	G	A	2.697e^-5	0.889	INTERGENIC
2R	16923357	2R_16923357_SNP [dm3] 2R_21035852_SNP [dm6]	C	T	2.710e^-5	0.889	INTERGENIC
2L	8626603	2L_8626603_SNP [dm3] 2L_8626603_SNP [dm6]	G	C	2.723e^-5	0.889	INTRON Sema-1a
3L	1317457	3L_1317457_SNP [dm3] 3L_1317457_SNP [dm6]	G	A	2.935e^-5	0.889	SYNONYMOUS_CODING CG9153	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8587669	3R_8587669_SNP [dm3] 3R_12761947_SNP [dm6]	G	C	2.937e^-5	0.889	INTRON beat-Vc
3R	19776867	3R_19776867_SNP [dm3] 3R_23951145_SNP [dm6]	G	A	2.944e^-5	0.889	DOWNSTREAM Aats-glupro INTERGENIC
2L	21851919	2L_21851919_INS [dm3] 2L_21851919_INS [dm6]	T	TTCT	2.966e^-5	0.889	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	3271914	3R_3271914_SNP [dm3] 3R_7446192_SNP [dm6]	G	T	3.017e^-5	0.889	INTERGENIC
2L	9570077	2L_9570077_DEL [dm3] 2L_9570077_DEL [dm6]	ATTAATAGTTGA...	A	3.066e^-5	0.889	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19861257	2R_19861257_SNP [dm3] 2R_23973734_SNP [dm6]	A	G	3.077e^-5	0.889	INTRON mr	TF binding site mE1_TFBS_sens
2L	18328372	2L_18328372_SNP [dm3] 2L_18328372_SNP [dm6]	C	G	3.118e^-5	0.889	INTRON Fas3
3R	16989117	3R_16989117_SNP [dm3] 3R_21163395_SNP [dm6]	A	T	3.193e^-5	0.889	UPSTREAM CG5810 INTRON SNF4Agamma
X	20218412	X_20218412_SNP [dm3] X_20347385_SNP [dm6]	T	A	3.204e^-5	0.889	INTERGENIC
2L	9562535	2L_9562535_SNP [dm3] 2L_9562535_SNP [dm6]	T	C	3.259e^-5	0.889	INTRON jp
3L	7138315	3L_7138315_SNP [dm3] 3L_7145215_SNP [dm6]	G	A	3.362e^-5	0.889	INTRON corn
X	19869871	X_19869871_SNP [dm3] X_19975838_SNP [dm6]	C	T	3.378e^-5	0.889	INTERGENIC
2L	9564119	2L_9564119_SNP [dm3] 2L_9564119_SNP [dm6]	A	G	3.389e^-5	0.889	INTRON jp
2L	9570118	2L_9570118_SNP [dm3] 2L_9570118_SNP [dm6]	A	T	3.402e^-5	0.889	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20218269	X_20218269_SNP [dm3] X_20347242_SNP [dm6]	C	A	3.452e^-5	0.889	INTERGENIC
3L	20906349	3L_20906349_SNP [dm3] 3L_20913249_SNP [dm6]	C	T	3.455e^-5	0.889	DOWNSTREAM CR45733 EXON CR43930
3R	1587773	3R_1587773_SNP [dm3] 3R_5762051_SNP [dm6]	A	T	3.700e^-5	0.889	INTRON CG2082
3L	9716377	3L_9716377_SNP [dm3] 3L_9723277_SNP [dm6]	T	C	3.722e^-5	0.889	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9569454	2L_9569454_SNP [dm3] 2L_9569454_SNP [dm6]	G	C	3.728e^-5	0.889	UPSTREAM CR44149 & 1 other INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	3027213	3L_3027213_SNP [dm3] 3L_3027213_SNP [dm6]	C	T	3.841e^-5	0.889	UPSTREAM aly INTERGENIC
3L	332002	3L_332002_SNP [dm3] 3L_332002_SNP [dm6]	T	A	3.944e^-5	0.889	UTR_5_PRIME mthl9 DOWNSTREAM mthl10 INTRON Ptpmeg	TF binding site mE1_TFBS_Trl
2L	16493517	2L_16493517_SNP [dm3] 2L_16493517_SNP [dm6]	T	G	4.015e^-5	0.889	INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	7485366	3L_7485366_SNP [dm3] 3L_7492266_SNP [dm6]	A	T	4.032e^-5	0.889	NON_SYNONYMOUS_CODING Cyp316a1
3L	7259205	3L_7259205_SNP [dm3] 3L_7266105_SNP [dm6]	C	A	4.044e^-5	0.889	DOWNSTREAM unc-13-4A INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19859985	2R_19859985_SNP [dm3] 2R_23972462_SNP [dm6]	A	T	4.046e^-5	0.889	UTR_5_PRIME mr DOWNSTREAM CG3065	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	9570049	2L_9570049_SNP [dm3] 2L_9570049_SNP [dm6]	C	G	4.103e^-5	0.889	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8911214	2L_8911214_SNP [dm3] 2L_8911214_SNP [dm6]	T	C	4.137e^-5	0.889	INTRON CG34398
3L	337491	3L_337491_SNP [dm3] 3L_337491_SNP [dm6]	C	T	4.205e^-5	0.889	INTRON Ptpmeg & 1 other
2R	19873759	2R_19873759_SNP [dm3] 2R_23986236_SNP [dm6]	T	G	4.254e^-5	0.889	UPSTREAM CG30178 INTRON Phm
2L	2275044	2L_2275044_SNP [dm3] 2L_2275044_SNP [dm6]	T	A	4.273e^-5	0.889	DOWNSTREAM CR43753 INTRON CR43753
2R	16923365	2R_16923365_SNP [dm3] 2R_21035860_SNP [dm6]	C	G	4.285e^-5	0.889	INTERGENIC
3R	10507897	3R_10507897_SNP [dm3] 3R_14682175_SNP [dm6]	G	C	4.351e^-5	0.889	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	18222879	X_18222879_SNP [dm3] X_18328846_SNP [dm6]	A	C	4.353e^-5	0.889	INTRON CG6123
3L	12068858	3L_12068858_SNP [dm3] 3L_12075758_SNP [dm6]	A	G	4.375e^-5	0.889	INTRON Sema-5c
3L	7138322	3L_7138322_SNP [dm3] 3L_7145222_SNP [dm6]	A	G	4.377e^-5	0.889	INTRON corn
2R	10578635	2R_10578635_SNP [dm3] 2R_14691130_SNP [dm6]	T	C	4.692e^-5	0.889	INTRON mspo
X	13314029	X_13314029_SNP [dm3] X_13419996_SNP [dm6]	A	G	4.706e^-5	0.889	SYNONYMOUS_CODING Set2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1243265	3L_1243265_SNP [dm3] 3L_1243265_SNP [dm6]	C	T	4.719e^-5	0.889	SYNONYMOUS_CODING Klp61F
3L	9716431	3L_9716431_SNP [dm3] 3L_9723331_SNP [dm6]	A	C	4.757e^-5	0.889	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16361229	2R_16361229_SNP [dm3] 2R_20473724_SNP [dm6]	G	T	4.759e^-5	0.889	INTRON CG12484
X	17076829	X_17076829_DEL [dm3] X_17182796_DEL [dm6]	TACGGTT	T	4.790e^-5	0.889	DOWNSTREAM CR44026 INTRON baz
2L	21866518	2L_21866518_SNP [dm3] 2L_21866518_SNP [dm6]	A	G	4.865e^-5	0.889	UPSTREAM CR44917 & 1 other DOWNSTREAM CR44919 INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13554710	3L_13554710_SNP [dm3] 3L_13561610_SNP [dm6]	A	G	4.993e^-5	0.889	INTRON bru-3	TF binding site mE1_TFBS_chinmo
2L	10586732	2L_10586732_SNP [dm3] 2L_10586732_SNP [dm6]	G	A	5.042e^-5	0.889	INTRON Trim9	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	13314040	X_13314040_SNP [dm3] X_13420007_SNP [dm6]	T	C	5.059e^-5	0.889	NON_SYNONYMOUS_CODING Set2	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	16727046	3L_16727046_SNP [dm3] 3L_16733946_SNP [dm6]	T	A	5.092e^-5	0.889	INTRON CG9701
3R	14335072	3R_14335072_INS [dm3] 3R_18509350_INS [dm6]	T	TTT	5.117e^-5	0.889	INTRON fru
2R	19873807	2R_19873807_SNP [dm3] 2R_23986284_SNP [dm6]	G	A	5.165e^-5	0.889	SYNONYMOUS_CODING Phm UPSTREAM CG30178	TF binding site mE1_TFBS_HSA
3R	1670042	3R_1670042_DEL [dm3] 3R_5844320_DEL [dm6]	TCC	G	5.230e^-5	0.889	INTRON CG1213
2R	12384618	2R_12384618_SNP [dm3] 2R_16497113_SNP [dm6]	C	G	5.270e^-5	0.889	NON_SYNONYMOUS_CODING CG7813
X	9498848	X_9498848_SNP [dm3] X_9604815_SNP [dm6]	G	A	5.290e^-5	0.889	UTR_3_PRIME Lst8 DOWNSTREAM Gga
X	9498923	X_9498923_SNP [dm3] X_9604890_SNP [dm6]	G	A	5.290e^-5	0.889	SYNONYMOUS_CODING Lst8 DOWNSTREAM Gga
X	5743499	X_5743499_SNP [dm3] X_5849466_SNP [dm6]	A	C	5.396e^-5	0.889	INTERGENIC
2L	9563571	2L_9563571_SNP [dm3] 2L_9563571_SNP [dm6]	A	G	5.406e^-5	0.889	INTRON jp
2R	15715160	2R_15715160_SNP [dm3] 2R_19827655_SNP [dm6]	G	A	5.412e^-5	0.889	NON_SYNONYMOUS_CODING Toll-7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	20906326	3L_20906326_SNP [dm3] 3L_20913226_SNP [dm6]	G	A	5.422e^-5	0.889	DOWNSTREAM CR45733 EXON CR43930
3L	355515	3L_355515_SNP [dm3] 3L_355515_SNP [dm6]	C	T	5.451e^-5	0.889	SYNONYMOUS_CODING Ptpmeg UPSTREAM CG1231
3R	16989113	3R_16989113_SNP [dm3] 3R_21163391_SNP [dm6]	A	G	5.468e^-5	0.889	UPSTREAM CG5810 INTRON SNF4Agamma
3L	3080587	3L_3080587_SNP [dm3] 3L_3080587_SNP [dm6]	G	T	5.533e^-5	0.889	UPSTREAM CG11486 INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2L	11010499	2L_11010499_SNP [dm3] 2L_11010499_SNP [dm6]	C	T	5.614e^-5	0.889	SYNONYMOUS_CODING Art8 UTR_3_PRIME Nup154 UPSTREAM dUTPase DOWNSTREAM Nup154	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	14564921	2R_14564921_SNP [dm3] 2R_18677416_SNP [dm6]	A	T	5.744e^-5	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	14792024	3R_14792024_SNP [dm3] 3R_18966302_SNP [dm6]	G	A	5.760e^-5	0.889	INTRON CG42613 & 1 other
X	19871357	X_19871357_SNP [dm3] X_19977324_SNP [dm6]	C	A	5.779e^-5	0.889	INTERGENIC
X	18222824	X_18222824_SNP [dm3] X_18328791_SNP [dm6]	G	A	5.800e^-5	0.889	INTRON CG6123
2L	18328367	2L_18328367_SNP [dm3] 2L_18328367_SNP [dm6]	C	A	5.857e^-5	0.889	INTRON Fas3
2L	12109687	2L_12109687_SNP [dm3] 2L_12109687_SNP [dm6]	T	C	5.889e^-5	0.889	SYNONYMOUS_CODING Phae1 UPSTREAM Rab6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18328363	2L_18328363_SNP [dm3] 2L_18328363_SNP [dm6]	T	A	5.919e^-5	0.889	INTRON Fas3
3L	15065245	3L_15065245_SNP [dm3] 3L_15072145_SNP [dm6]	G	A	5.970e^-5	0.889	START_GAINED cp309 UTR_5_PRIME cp309 INTRON cp309	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
3L	718515	3L_718515_SNP [dm3] 3L_718515_SNP [dm6]	A	C	6.158e^-5	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10100914	3L_10100914_SNP [dm3] 3L_10107814_SNP [dm6]	C	T	6.180e^-5	0.889	INTRON dpr6
2L	9570185	2L_9570185_SNP [dm3] 2L_9570185_SNP [dm6]	A	C	6.201e^-5	0.889	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	335436	3L_335436_SNP [dm3] 3L_335436_SNP [dm6]	A	G	6.288e^-5	0.889	SYNONYMOUS_CODING mthl10 INTRON Ptpmeg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19871664	X_19871664_SNP [dm3] X_19977631_SNP [dm6]	C	G	6.310e^-5	0.889	INTERGENIC
X	9841356	X_9841356_SNP [dm3] X_9947323_SNP [dm6]	T	G	6.315e^-5	0.889	INTERGENIC
2R	6984375	2R_6984375_INS [dm3] 2R_11096870_INS [dm6]	A	AA	6.459e^-5	0.889	INTRON luna	TF binding site BDTNP1_TFBS_twi
2L	18328357	2L_18328357_SNP [dm3] 2L_18328357_SNP [dm6]	A	T	6.477e^-5	0.889	INTRON Fas3
3L	20906902	3L_20906902_DEL [dm3] 3L_20913802_DEL [dm6]	TGGAACAAACGAAACTCCCA...	T	6.621e^-5	0.889	UPSTREAM CR43930 DOWNSTREAM CR45733 INTERGENIC
3L	9716427	3L_9716427_SNP [dm3] 3L_9723327_SNP [dm6]	G	A	6.808e^-5	0.889	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	3261299	2R_3261299_DEL [dm3] 2R_7373794_DEL [dm6]	TGAAT	T	6.834e^-5	0.889	INTRON Dscam1	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	19127364	3R_19127364_SNP [dm3] 3R_23301642_SNP [dm6]	C	T	6.874e^-5	0.889	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	19870082	X_19870082_DEL [dm3] X_19976049_DEL [dm6]	TTTGT	T	6.888e^-5	0.889	INTERGENIC
2R	19873795	2R_19873795_SNP [dm3] 2R_23986272_SNP [dm6]	A	G	6.894e^-5	0.889	SYNONYMOUS_CODING Phm UPSTREAM CG30178
2L	9563017	2L_9563017_SNP [dm3] 2L_9563017_SNP [dm6]	G	A	7.114e^-5	0.889	INTRON jp
X	18222820	X_18222820_DEL [dm3] X_18328787_DEL [dm6]	TT	T	7.130e^-5	0.889	INTRON CG6123
X	19871464	X_19871464_SNP [dm3] X_19977431_SNP [dm6]	A	G	7.151e^-5	0.889	INTERGENIC
3R	1553153	3R_1553153_SNP [dm3] 3R_5727431_SNP [dm6]	C	T	7.175e^-5	0.889	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
2R	1265705	2R_1265705_SNP [dm3] 2R_5378200_SNP [dm6]	G	A	7.204e^-5	0.889	INTERGENIC	transposable element FlyBase
X	14231765	X_14231765_SNP [dm3] X_14337732_SNP [dm6]	A	G	7.259e^-5	0.889	INTRON dpr8
X	16133856	X_16133856_SNP [dm3] X_16239823_SNP [dm6]	G	A	7.384e^-5	0.889	INTERGENIC
2L	21929216	2L_21929216_SNP [dm3] 2L_21929216_SNP [dm6]	A	G	7.438e^-5	0.889	INTERGENIC
3L	12647701	3L_12647701_SNP [dm3] 3L_12654601_SNP [dm6]	G	T	7.468e^-5	0.889	INTERGENIC
3R	12486718	3R_12486718_SNP [dm3] 3R_16660996_SNP [dm6]	C	T	7.483e^-5	0.889	INTRON Ubx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19776740	3R_19776740_SNP [dm3] 3R_23951018_SNP [dm6]	A	T	7.499e^-5	0.889	INTERGENIC
X	19871581	X_19871581_SNP [dm3] X_19977548_SNP [dm6]	T	G	7.543e^-5	0.889	INTERGENIC
2L	18858630	2L_18858630_DEL [dm3] 2L_18858630_DEL [dm6]	AATCGGCGACCAT...	A	7.554e^-5	0.889	UPSTREAM CG10602 DOWNSTREAM tup INTRON CG10602 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
2R	11683589	2R_11683589_SNP [dm3] 2R_15796084_SNP [dm6]	A	T	7.576e^-5	0.889	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19563657	2L_19563657_SNP [dm3] 2L_19563657_SNP [dm6]	A	T	7.630e^-5	0.889	UPSTREAM CG13078 DOWNSTREAM Tep5 INTERGENIC	TF binding site mE1_TFBS_cnc
X	16608288	X_16608288_SNP [dm3] X_16714255_SNP [dm6]	T	C	7.742e^-5	0.889	UTR_3_PRIME CG13008 DOWNSTREAM CG34325
2R	19860123	2R_19860123_SNP [dm3] 2R_23972600_SNP [dm6]	G	A	7.819e^-5	0.889	DOWNSTREAM CG3065 INTRON mr	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
X	19869903	X_19869903_DEL [dm3] X_19975870_DEL [dm6]	TTAGGAAGAAGTATCCAGAG...	T	7.908e^-5	0.889	INTERGENIC
3R	3966171	3R_3966171_SNP [dm3] 3R_8140449_SNP [dm6]	T	G	8.131e^-5	0.889	UPSTREAM tRNA:N5:84F & 2 others DOWNSTREAM tRNA:R2:84Fc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	9562997	2L_9562997_SNP [dm3] 2L_9562997_SNP [dm6]	A	G	8.151e^-5	0.889	INTRON jp
X	16133855	X_16133855_SNP [dm3] X_16239822_SNP [dm6]	A	T	8.171e^-5	0.889	INTERGENIC
3R	7366142	3R_7366142_SNP [dm3] 3R_11540420_SNP [dm6]	T	G	8.252e^-5	0.889	INTRON dpr4
3L	15402378	3L_15402378_SNP [dm3] 3L_15409278_SNP [dm6]	T	A	8.292e^-5	0.889	INTERGENIC
2L	6644839	2L_6644839_SNP [dm3] 2L_6644839_SNP [dm6]	T	C	8.304e^-5	0.889	INTRON CG31635	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	20262267	X_20262267_SNP [dm3] X_20391240_SNP [dm6]	A	G	8.499e^-5	0.889	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12099557	2R_12099557_SNP [dm3] 2R_16212052_SNP [dm6]	T	C	8.534e^-5	0.889	INTRON mrj
3L	334372	3L_334372_SNP [dm3] 3L_334372_SNP [dm6]	T	G	8.548e^-5	0.889	NON_SYNONYMOUS_CODING mthl10 DOWNSTREAM mthl10 INTRON Ptpmeg & 1 other	TF binding site mE1_TFBS_cad
2R	19564919	2R_19564919_SNP [dm3] 2R_23677396_SNP [dm6]	C	G	8.684e^-5	0.889	INTRON Pde8	TF binding site mE1_TFBS_cad
2L	15306834	2L_15306834_SNP [dm3] 2L_15306834_SNP [dm6]	T	C	8.692e^-5	0.889	INTERGENIC
2R	9248623	2R_9248623_SNP [dm3] 2R_13361118_SNP [dm6]	A	G	8.713e^-5	0.889	DOWNSTREAM CR45312 INTERGENIC
3L	9716322	3L_9716322_SNP [dm3] 3L_9723222_SNP [dm6]	A	T	8.759e^-5	0.889	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	3077080	2R_3077080_INS [dm3] 2R_7189575_INS [dm6]	G	GGCAG	8.782e^-5	0.889	INTRON pk
2L	10318628	2L_10318628_SNP [dm3] 2L_10318628_SNP [dm6]	C	T	8.783e^-5	0.889	NON_SYNONYMOUS_CODING CG5381	TF binding site mE1_TFBS_sens
2L	9567338	2L_9567338_SNP [dm3] 2L_9567338_SNP [dm6]	T	A	8.825e^-5	0.889	UPSTREAM jp DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	3027196	3L_3027196_SNP [dm3] 3L_3027196_SNP [dm6]	A	C	8.840e^-5	0.889	UPSTREAM aly INTERGENIC
2R	17692837	2R_17692837_SNP [dm3] 2R_21805332_SNP [dm6]	T	C	8.908e^-5	0.889	DOWNSTREAM CR9284 INTERGENIC
2R	16866650	2R_16866650_SNP [dm3] 2R_20979145_SNP [dm6]	A	T	9.081e^-5	0.889	START_GAINED CG9313 UTR_5_PRIME CG9313 UPSTREAM CG15650 & 1 other
3L	6994029	3L_6994029_SNP [dm3] 3L_7000929_SNP [dm6]	G	A	9.131e^-5	0.889	INTRON Mp
3L	3027201	3L_3027201_SNP [dm3] 3L_3027201_SNP [dm6]	C	A	9.139e^-5	0.889	UPSTREAM aly INTERGENIC
3R	3948535	3R_3948535_SNP [dm3] 3R_8122813_SNP [dm6]	T	G	9.150e^-5	0.889	UTR_5_PRIME CG7878 DOWNSTREAM puc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	15738163	X_15738163_SNP [dm3] X_15844130_SNP [dm6]	C	A	9.266e^-5	0.889	START_GAINED Aats-arg UTR_5_PRIME Aats-arg UPSTREAM CG8578	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
2R	9941864	2R_9941864_SNP [dm3] 2R_14054359_SNP [dm6]	C	T	9.312e^-5	0.889	INTRON mam
2L	16369345	2L_16369345_SNP [dm3] 2L_16369345_SNP [dm6]	T	A	9.377e^-5	0.889	INTERGENIC
2R	7107070	2R_7107070_SNP [dm3] 2R_11219565_SNP [dm6]	T	C	9.430e^-5	0.889	UTR_5_PRIME Syx6 UPSTREAM Syx6 & 1 other INTRON CG9084	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	21879086	2L_21879086_SNP [dm3] 2L_21879086_SNP [dm6]	C	G	9.437e^-5	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19870093	X_19870093_SNP [dm3] X_19976060_SNP [dm6]	A	T	9.493e^-5	0.889	INTERGENIC
3R	3948645	3R_3948645_SNP [dm3] 3R_8122923_SNP [dm6]	C	T	9.539e^-5	0.889	NON_SYNONYMOUS_CODING CG7878 DOWNSTREAM puc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19865226	2R_19865226_SNP [dm3] 2R_23977703_SNP [dm6]	G	C	9.601e^-5	0.889	UPSTREAM Gadd34 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc
3L	1183568	3L_1183568_SNP [dm3] 3L_1183568_SNP [dm6]	A	T	9.618e^-5	0.889	INTERGENIC
2L	9567451	2L_9567451_DEL [dm3] 2L_9567451_DEL [dm6]	AA	A	9.637e^-5	0.889	UPSTREAM jp DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	21917165	2L_21917165_SNP [dm3] 2L_21917165_SNP [dm6]	A	C	9.645e^-5	0.889	NON_SYNONYMOUS_CODING CG11634	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8993648	2L_8993648_SNP [dm3] 2L_8993648_SNP [dm6]	T	A	9.657e^-5	0.889	UPSTREAM CG17906 DOWNSTREAM alien & 1 other INTERGENIC
2L	11010372	2L_11010372_SNP [dm3] 2L_11010372_SNP [dm6]	G	T	9.747e^-5	0.889	SYNONYMOUS_CODING Art8 UTR_3_PRIME Nup154 UPSTREAM dUTPase DOWNSTREAM Nup154	TF binding site mE1_TFBS_sens
2L	20812657	2L_20812657_SNP [dm3] 2L_20812657_SNP [dm6]	T	C	9.766e^-5	0.889	INTRON CG9328
3L	9716420	3L_9716420_INS [dm3] 3L_9723320_INS [dm6]	G	TTA	9.822e^-5	0.889	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	1183559	3L_1183559_SNP [dm3] 3L_1183559_SNP [dm6]	G	C	9.925e^-5	0.889	INTERGENIC
2R	15906467	2R_15906467_SNP [dm3] 2R_20018962_SNP [dm6]	T	C	9.942e^-5	0.889	INTERGENIC
2L	22020494	2L_22020494_SNP [dm3] 2L_22020494_SNP [dm6]	A	G	9.962e^-5	0.889	DOWNSTREAM CR33987 INTRON tio	TF binding site mE1_TFBS_Trl
2R	17726118	2R_17726118_SNP [dm3] 2R_21838613_SNP [dm6]	C	T	1.002e^-4	0.889	SYNONYMOUS_CODING CG4372
X	7611446	X_7611446_SNP [dm3] X_7717413_SNP [dm6]	A	C	1.004e^-4	0.889	INTRON CG15478
3L	10699904	3L_10699904_INS [dm3] 3L_10706804_INS [dm6]	A	AA	1.007e^-4	0.889	INTERGENIC
2R	16962141	2R_16962141_SNP [dm3] 2R_21074636_SNP [dm6]	T	C	1.008e^-4	0.889	INTRON Treh
2R	20097816	2R_20097816_SNP [dm3] 2R_24210293_SNP [dm6]	C	T	1.018e^-4	0.889	INTERGENIC
2R	18622726	2R_18622726_SNP [dm3] 2R_22735221_SNP [dm6]	G	T	1.024e^-4	0.889	INTRON jbug
3R	1938392	3R_1938392_SNP [dm3] 3R_6112670_SNP [dm6]	A	G	1.025e^-4	0.889	UPSTREAM Obp83g INTERGENIC	regulatory region REDfly_CRMs
3L	12638580	3L_12638580_DEL [dm3] 3L_12645480_DEL [dm6]	GGA	G	1.031e^-4	0.889	EXON CR32111
X	20269030	X_20269030_SNP [dm3] X_20398003_SNP [dm6]	T	C	1.032e^-4	0.889	INTRON HERC2	transposable element FlyBase
2R	13712146	2R_13712146_SNP [dm3] 2R_17824641_SNP [dm6]	T	A	1.032e^-4	0.889	INTRON grh	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi transposable element FlyBase
2L	18328157	2L_18328157_SNP [dm3] 2L_18328157_SNP [dm6]	G	A	1.034e^-4	0.889	INTRON Fas3
2L	19512010	2L_19512010_SNP [dm3] 2L_19512010_SNP [dm6]	G	A	1.040e^-4	0.889	SYNONYMOUS_CODING CG10186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13163039	3R_13163039_DEL [dm3] 3R_17337317_DEL [dm6]	CTAAATGAGCCGTTGGC...	C	1.047e^-4	0.889	INTRON beat-IIa
2R	1356091	2R_1356091_SNP [dm3] 2R_5468586_SNP [dm6]	A	G	1.051e^-4	0.889	INTRON CG30440
3R	19776662	3R_19776662_SNP [dm3] 3R_23950940_SNP [dm6]	A	G	1.053e^-4	0.889	INTERGENIC
X	5250384	X_5250384_SNP [dm3] X_5356351_SNP [dm6]	T	A	1.054e^-4	0.889	INTRON SK
2R	15884106	2R_15884106_SNP [dm3] 2R_19996601_SNP [dm6]	G	C	1.055e^-4	0.889	INTERGENIC
3R	14339544	3R_14339544_SNP [dm3] 3R_18513822_SNP [dm6]	T	C	1.056e^-4	0.889	UTR_5_PRIME fru INTRON fru
X	5740732	X_5740732_SNP [dm3] X_5846699_SNP [dm6]	C	T	1.057e^-4	0.889	DOWNSTREAM CG12729 INTERGENIC
2L	12111309	2L_12111309_SNP [dm3] 2L_12111309_SNP [dm6]	T	C	1.060e^-4	0.889	SYNONYMOUS_CODING Phae2 DOWNSTREAM Phae1	TF binding site mE1_TFBS_cad
2R	17956374	2R_17956374_SNP [dm3] 2R_22068869_SNP [dm6]	G	T	1.064e^-4	0.889	SYNONYMOUS_CODING Snp DOWNSTREAM CG44249 & 1 other
2R	17725920	2R_17725920_SNP [dm3] 2R_21838415_SNP [dm6]	C	T	1.067e^-4	0.889	SYNONYMOUS_CODING CG4372
3L	7296139	3L_7296139_DEL [dm3] 3L_7303039_DEL [dm6]	AA	A	1.068e^-4	0.889	INTRON unc-13-4A
3R	15707875	3R_15707875_SNP [dm3] 3R_19882153_SNP [dm6]	C	G	1.070e^-4	0.889	NON_SYNONYMOUS_CODING Pk92B	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	15402313	3L_15402313_SNP [dm3] 3L_15409213_SNP [dm6]	C	T	1.071e^-4	0.889	DOWNSTREAM CG33259 INTERGENIC
2L	8583367	2L_8583367_SNP [dm3] 2L_8583367_SNP [dm6]	A	C	1.073e^-4	0.889	INTRON Sema-1a
2R	9106776	2R_9106776_SNP [dm3] 2R_13219271_SNP [dm6]	C	T	1.078e^-4	0.889	UPSTREAM CG4630 DOWNSTREAM CG4646 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	3967713	3R_3967713_SNP [dm3] 3R_8141991_SNP [dm6]	T	A	1.078e^-4	0.889	UPSTREAM tRNA:R2:84Fa INTERGENIC
2R	16916927	2R_16916927_SNP [dm3] 2R_21029422_SNP [dm6]	T	C	1.079e^-4	0.889	EXON CR45148
3L	11221266	3L_11221266_SNP [dm3] 3L_11228166_SNP [dm6]	T	A	1.080e^-4	0.889	UTR_3_PRIME CG42671 INTRON CG42671	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7366241	3R_7366241_SNP [dm3] 3R_11540519_SNP [dm6]	A	G	1.093e^-4	0.889	INTRON dpr4
2L	9565030	2L_9565030_SNP [dm3] 2L_9565030_SNP [dm6]	A	G	1.094e^-4	0.889	UTR_5_PRIME jp INTRON jp
2L	20991750	2L_20991750_SNP [dm3] 2L_20991750_SNP [dm6]	A	C	1.103e^-4	0.889	INTRON CG42238
2L	9562900	2L_9562900_SNP [dm3] 2L_9562900_SNP [dm6]	C	T	1.108e^-4	0.889	INTRON jp
2R	11575711	2R_11575711_SNP [dm3] 2R_15688206_SNP [dm6]	G	T	1.123e^-4	0.889	NON_SYNONYMOUS_CODING Cep89 SPLICE_SITE_REGION Cep89 DOWNSTREAM Ranbp11	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8325810	2L_8325810_SNP [dm3] 2L_8325810_SNP [dm6]	A	G	1.123e^-4	0.889	UPSTREAM CG7781 INTERGENIC
2R	10969472	2R_10969472_SNP [dm3] 2R_15081967_SNP [dm6]	A	T	1.124e^-4	0.889	INTERGENIC
2R	13785051	2R_13785051_SNP [dm3] 2R_17897546_SNP [dm6]	G	A	1.128e^-4	0.889	INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2556730	X_2556730_SNP [dm3] X_2662697_SNP [dm6]	A	G	1.130e^-4	0.889	INTRON sgg
3L	9202296	3L_9202296_MNP [dm3] 3L_9209196_MNP [dm6]	AAT	TTA	1.142e^-4	0.889	UPSTREAM Slc45-1 INTERGENIC
2R	3265898	2R_3265898_SNP [dm3] 2R_7378393_SNP [dm6]	C	A	1.146e^-4	0.889	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
2L	18652002	2L_18652002_SNP [dm3] 2L_18652002_SNP [dm6]	A	G	1.146e^-4	0.889	INTRON MESR3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9571394	2L_9571394_SNP [dm3] 2L_9571394_SNP [dm6]	G	A	1.147e^-4	0.889	UTR_5_PRIME CG3838 INTRON CG3838
3R	16938688	3R_16938688_SNP [dm3] 3R_21112966_SNP [dm6]	C	T	1.153e^-4	0.889	INTRON Rab11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	16938752	3R_16938752_SNP [dm3] 3R_21113030_SNP [dm6]	A	G	1.153e^-4	0.889	INTRON Rab11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	7028540	3L_7028540_SNP [dm3] 3L_7035440_SNP [dm6]	T	C	1.158e^-4	0.889	INTRON Mp
X	16133847	X_16133847_SNP [dm3] X_16239814_SNP [dm6]	G	A	1.164e^-4	0.889	INTERGENIC
2L	21929390	2L_21929390_SNP [dm3] 2L_21929390_SNP [dm6]	G	C	1.167e^-4	0.889	UPSTREAM CR45334 INTERGENIC
3L	10344778	3L_10344778_SNP [dm3] 3L_10351678_SNP [dm6]	G	A	1.170e^-4	0.889	INTRON CR44327
3R	12172294	3R_12172294_DEL [dm3] 3R_16346572_DEL [dm6]	CTGCAA	C	1.174e^-4	0.889	UTR_3_PRIME CG14879 DOWNSTREAM pad INTRON CG14879
2L	18328275	2L_18328275_DEL [dm3] 2L_18328275_DEL [dm6]	GTGATTCAGCAAG...	G	1.179e^-4	0.889	INTRON Fas3
2R	19853526	2R_19853526_SNP [dm3] 2R_23966003_SNP [dm6]	A	G	1.184e^-4	0.889	SYNONYMOUS_CODING Alas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12176326	2R_12176326_SNP [dm3] 2R_16288821_SNP [dm6]	C	T	1.190e^-4	0.889	NON_SYNONYMOUS_CODING CG30099 UPSTREAM CG30324 & 1 other DOWNSTREAM CR43730	TF binding site mE1_TFBS_cad
2R	19873742	2R_19873742_SNP [dm3] 2R_23986219_SNP [dm6]	A	G	1.196e^-4	0.889	UPSTREAM CG30178 INTRON Phm
3L	5130756	3L_5130756_SNP [dm3] 3L_5137656_SNP [dm6]	G	T	1.196e^-4	0.889	SYNONYMOUS_CODING CG4611 DOWNSTREAM Prpk	TF binding site mE1_TFBS_chinmo
3L	9716375	3L_9716375_SNP [dm3] 3L_9723275_SNP [dm6]	G	T	1.202e^-4	0.889	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	1194260	3R_1194260_DEL [dm3] 3R_5368538_DEL [dm6]	CT	C	1.204e^-4	0.889	UPSTREAM Cerk EXON CR44103	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	9567366	2L_9567366_SNP [dm3] 2L_9567366_SNP [dm6]	C	G	1.210e^-4	0.889	UPSTREAM jp DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	7482547	3L_7482547_SNP [dm3] 3L_7489447_SNP [dm6]	C	A	1.217e^-4	0.889	INTERGENIC
2R	19410022	2R_19410022_SNP [dm3] 2R_23522499_SNP [dm6]	A	G	1.219e^-4	0.889	INTRON RabX1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	18885333	2L_18885333_SNP [dm3] 2L_18885333_SNP [dm6]	C	G	1.221e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	5412539	2R_5412539_SNP [dm3] 2R_9525034_SNP [dm6]	A	G	1.223e^-4	0.889	INTRON brp
3L	9716422	3L_9716422_SNP [dm3] 3L_9723322_SNP [dm6]	C	T	1.232e^-4	0.889	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10610526	3L_10610526_SNP [dm3] 3L_10617426_SNP [dm6]	C	G	1.234e^-4	0.889	INTERGENIC
2L	15502320	2L_15502320_SNP [dm3] 2L_15502320_SNP [dm6]	G	T	1.239e^-4	0.889	SYNONYMOUS_CODING lace	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3288141	2R_3288141_INS [dm3] 2R_7400636_INS [dm6]	A	AT	1.240e^-4	0.889	UPSTREAM CG11112 INTRON Eaf
3L	1406288	3L_1406288_SNP [dm3] 3L_1406288_SNP [dm6]	A	G	1.242e^-4	0.889	INTRON Ptp61F	TF binding site mE1_TFBS_cad
2R	19409961	2R_19409961_SNP [dm3] 2R_23522438_SNP [dm6]	C	A	1.252e^-4	0.889	INTRON RabX1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	1317358	3L_1317358_SNP [dm3] 3L_1317358_SNP [dm6]	G	T	1.254e^-4	0.889	INTRON CG9153	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8425408	2L_8425408_MNP [dm3] 2L_8425408_MNP [dm6]	GAT	TTG	1.258e^-4	0.889	INTRON Akap200	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens mE1_TFBS_Trl
2L	2938338	2L_2938338_SNP [dm3] 2L_2938338_SNP [dm6]	A	T	1.260e^-4	0.889	INTRON lilli	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	1553152	3R_1553152_SNP [dm3] 3R_5727430_SNP [dm6]	T	A	1.267e^-4	0.889	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
3R	25063512	3R_25063512_SNP [dm3] 3R_29237790_SNP [dm6]	G	T	1.271e^-4	0.889	NON_SYNONYMOUS_CODING CG11951	TF binding site mE1_TFBS_cad
3L	8517696	3L_8517696_SNP [dm3] 3L_8524596_SNP [dm6]	G	T	1.275e^-4	0.889	SYNONYMOUS_CODING GstO1 UPSTREAM foi	TF binding site BDTNP1_TFBS_dl
2L	21189414	2L_21189414_SNP [dm3] 2L_21189414_SNP [dm6]	T	G	1.281e^-4	0.889	INTRON Ret
3L	9716433	3L_9716433_SNP [dm3] 3L_9723333_SNP [dm6]	A	T	1.287e^-4	0.889	UPSTREAM defl & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	12192743	X_12192743_SNP [dm3] X_12298710_SNP [dm6]	T	G	1.291e^-4	0.889	INTRON Ten-a
2R	18453286	2R_18453286_SNP [dm3] 2R_22565781_SNP [dm6]	G	A	1.298e^-4	0.889	SYNONYMOUS_CODING dnr1	TF binding site mE1_TFBS_cad
2R	20302289	2R_20302289_SNP [dm3] 2R_24414766_SNP [dm6]	T	A	1.301e^-4	0.889	UTR_5_PRIME CG45069 UTR_3_PRIME CG45068 DOWNSTREAM prom
2L	21805871	2L_21805871_SNP [dm3] 2L_21805871_SNP [dm6]	G	C	1.305e^-4	0.889	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	16361176	2R_16361176_SNP [dm3] 2R_20473671_SNP [dm6]	A	G	1.309e^-4	0.889	INTRON CG12484
3L	6993468	3L_6993468_INS [dm3] 3L_7000368_INS [dm6]	C	CAATTC	1.318e^-4	0.889	INTRON Mp
3R	18480164	3R_18480164_SNP [dm3] 3R_22654442_SNP [dm6]	C	T	1.322e^-4	0.889	INTRON CG45058
2R	7074624	2R_7074624_SNP [dm3] 2R_11187119_SNP [dm6]	A	G	1.328e^-4	0.889	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9561750	2L_9561750_SNP [dm3] 2L_9561750_SNP [dm6]	A	C	1.334e^-4	0.889	INTRON jp
3L	1183586	3L_1183586_SNP [dm3] 3L_1183586_SNP [dm6]	G	A	1.334e^-4	0.889	INTERGENIC
2R	10553034	2R_10553034_INS [dm3] 2R_14665529_INS [dm6]	T	TTAGAATCT	1.338e^-4	0.889	UPSTREAM CG12861 DOWNSTREAM CG12860 INTERGENIC
2R	3261291	2R_3261291_SNP [dm3] 2R_7373786_SNP [dm6]	A	T	1.346e^-4	0.889	INTRON Dscam1	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10880813	3L_10880813_SNP [dm3] 3L_10887713_SNP [dm6]	A	T	1.348e^-4	0.889	INTERGENIC
2L	7760657	2L_7760657_SNP [dm3] 2L_7760657_SNP [dm6]	G	A	1.348e^-4	0.889	INTRON CG7196
2L	18328356	2L_18328356_SNP [dm3] 2L_18328356_SNP [dm6]	C	T	1.353e^-4	0.889	INTRON Fas3
2L	9567386	2L_9567386_SNP [dm3] 2L_9567386_SNP [dm6]	A	C	1.355e^-4	0.889	UPSTREAM jp DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	13425626	3L_13425626_SNP [dm3] 3L_13432526_SNP [dm6]	T	C	1.376e^-4	0.889	UPSTREAM tRNA:V4:70BCb INTRON CG10713
2L	9571523	2L_9571523_SNP [dm3] 2L_9571523_SNP [dm6]	C	G	1.385e^-4	0.889	SYNONYMOUS_CODING CG3838
2R	19271591	2R_19271591_INS [dm3] 2R_23384068_INS [dm6]	AT	GAAGA	1.386e^-4	0.889	UPSTREAM CG13551 DOWNSTREAM CG30414 EXON CR44784
2R	19855192	2R_19855192_SNP [dm3] 2R_23967669_SNP [dm6]	T	C	1.393e^-4	0.889	SYNONYMOUS_CODING CG34213 UPSTREAM or DOWNSTREAM Alas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	1596269	3R_1596269_DEL [dm3] 3R_5770547_DEL [dm6]	CACCACTTTGTCGC...	C	1.397e^-4	0.889	INTRON CG2082
2R	12077781	2R_12077781_SNP [dm3] 2R_16190276_SNP [dm6]	A	G	1.405e^-4	0.889	SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6993500	3L_6993500_DEL [dm3] 3L_7000400_DEL [dm6]	GGAAATATAAAGGGTTATAA...	AGAAATATATAAATGGTTAT...	1.437e^-4	0.889	INTRON Mp
X	21116655	X_21116655_SNP [dm3] X_21245628_SNP [dm6]	T	A	1.443e^-4	0.889	INTRON CG32521
2L	7760876	2L_7760876_SNP [dm3] 2L_7760876_SNP [dm6]	C	A	1.446e^-4	0.889	INTRON CG7196
2L	22909511	2L_22909511_SNP [dm3] 2L_23016779_SNP [dm6]	G	A	1.454e^-4	0.889	INTRON Cht3
X	5408137	X_5408137_DEL [dm3] X_5514104_DEL [dm6]	CTGAATTCAGCGAAGAGC...	C	1.456e^-4	0.889	INTERGENIC
2L	21846992	2L_21846992_SNP [dm3] 2L_21846992_SNP [dm6]	A	C	1.460e^-4	0.889	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12647758	3L_12647758_SNP [dm3] 3L_12654658_SNP [dm6]	T	A	1.463e^-4	0.889	INTERGENIC
2R	19859090	2R_19859090_SNP [dm3] 2R_23971567_SNP [dm6]	T	G	1.469e^-4	0.889	NON_SYNONYMOUS_CODING CG3065 UPSTREAM mr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15882521	2R_15882521_SNP [dm3] 2R_19995016_SNP [dm6]	A	G	1.472e^-4	0.889	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14871517	2L_14871517_INS [dm3] 2L_14871517_INS [dm6]	A	AC	1.482e^-4	0.889	INTRON CG4480
2L	9212436	2L_9212436_SNP [dm3] 2L_9212436_SNP [dm6]	G	T	1.484e^-4	0.889	INTRON tai
2R	15895623	2R_15895623_SNP [dm3] 2R_20008118_SNP [dm6]	C	A	1.490e^-4	0.889	DOWNSTREAM CR44628 INTERGENIC
2R	15895632	2R_15895632_SNP [dm3] 2R_20008127_SNP [dm6]	T	G	1.490e^-4	0.889	DOWNSTREAM CR44628 INTERGENIC
3R	18480162	3R_18480162_SNP [dm3] 3R_22654440_SNP [dm6]	A	C	1.496e^-4	0.889	INTRON CG45058
3R	14030411	3R_14030411_SNP [dm3] 3R_18204689_SNP [dm6]	G	A	1.502e^-4	0.889	INTRON CG7985
3L	10344385	3L_10344385_SNP [dm3] 3L_10351285_SNP [dm6]	T	C	1.504e^-4	0.889	INTRON CR44327
2R	15715013	2R_15715013_SNP [dm3] 2R_19827508_SNP [dm6]	A	C	1.508e^-4	0.889	SYNONYMOUS_CODING Toll-7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	9103655	2R_9103655_SNP [dm3] 2R_13216150_SNP [dm6]	G	A	1.512e^-4	0.889	DOWNSTREAM CG4627 INTRON CG4630
3R	5899901	3R_5899901_SNP [dm3] 3R_10074179_SNP [dm6]	A	C	1.525e^-4	0.889	SYNONYMOUS_CODING CG5361 DOWNSTREAM nerfin-2
2L	21913716	2L_21913716_SNP [dm3] 2L_21913716_SNP [dm6]	A	T	1.531e^-4	0.889	DOWNSTREAM CG31600 INTERGENIC
3R	20819924	3R_20819924_SNP [dm3] 3R_24994202_SNP [dm6]	C	A	1.531e^-4	0.889	INTRON tnc
2R	9160932	2R_9160932_SNP [dm3] 2R_13273427_SNP [dm6]	C	T	1.535e^-4	0.889	INTRON Dh31-R	TF binding site mE1_TFBS_cad
3R	1549813	3R_1549813_SNP [dm3] 3R_5724091_SNP [dm6]	C	T	1.536e^-4	0.889	EXON CR44924	TF binding site BDTNP1_TFBS_gt
X	13663112	X_13663112_SNP [dm3] X_13769079_SNP [dm6]	A	C	1.544e^-4	0.889	INTRON rdgB	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9564341	2L_9564341_SNP [dm3] 2L_9564341_SNP [dm6]	G	C	1.550e^-4	0.889	INTRON jp
2R	5509177	2R_5509177_SNP [dm3] 2R_9621672_SNP [dm6]	T	A	1.567e^-4	0.889	UPSTREAM mir-307a DOWNSTREAM mir-307b INTRON Mmp2
2R	17725686	2R_17725686_SNP [dm3] 2R_21838181_SNP [dm6]	C	T	1.573e^-4	0.889	SYNONYMOUS_CODING CG4372
2L	10434868	2L_10434868_SNP [dm3] 2L_10434868_SNP [dm6]	G	A	1.585e^-4	0.889	NON_SYNONYMOUS_CODING CG5337	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	22896456	2L_22896456_SNP [dm3] 2L_23003724_SNP [dm6]	G	C	1.590e^-4	0.889	INTRON Cht3
3L	11318513	3L_11318513_SNP [dm3] 3L_11325413_SNP [dm6]	C	A	1.590e^-4	0.889	UPSTREAM CR44723 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	8325609	2L_8325609_SNP [dm3] 2L_8325609_SNP [dm6]	C	T	1.596e^-4	0.889	UPSTREAM CG7781 INTERGENIC
2R	3261289	2R_3261289_SNP [dm3] 2R_7373784_SNP [dm6]	T	A	1.605e^-4	0.889	INTRON Dscam1	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9160844	2R_9160844_SNP [dm3] 2R_13273339_SNP [dm6]	T	C	1.613e^-4	0.889	INTRON Dh31-R
3R	16936405	3R_16936405_SNP [dm3] 3R_21110683_SNP [dm6]	G	A	1.618e^-4	0.889	NON_SYNONYMOUS_CODING rtet UPSTREAM Rab11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run
2R	19861028	2R_19861028_SNP [dm3] 2R_23973505_SNP [dm6]	T	A	1.620e^-4	0.889	INTRON mr	TF binding site mE1_TFBS_sens
X	16698678	X_16698678_SNP [dm3] X_16804645_SNP [dm6]	G	A	1.642e^-4	0.889	NON_SYNONYMOUS_CODING CG13005	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19861296	2R_19861296_SNP [dm3] 2R_23973773_SNP [dm6]	C	A	1.656e^-4	0.889	SYNONYMOUS_CODING mr	TF binding site mE1_TFBS_sens
2R	13785048	2R_13785048_SNP [dm3] 2R_17897543_SNP [dm6]	A	G	1.659e^-4	0.889	INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19252724	2R_19252724_SNP [dm3] 2R_23365201_SNP [dm6]	C	T	1.667e^-4	0.889	SYNONYMOUS_CODING vir	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6800168	2R_6800168_SNP [dm3] 2R_10912663_SNP [dm6]	G	A	1.674e^-4	0.889	INTERGENIC
X	20268609	X_20268609_SNP [dm3] X_20397582_SNP [dm6]	A	G	1.674e^-4	0.889	INTRON HERC2	transposable element FlyBase
2R	19409956	2R_19409956_DEL [dm3] 2R_23522433_DEL [dm6]	GA	G	1.680e^-4	0.889	INTRON RabX1	TF binding site BDTNP1_TFBS_dl
3L	17181043	3L_17181043_SNP [dm3] 3L_17187943_SNP [dm6]	G	C	1.680e^-4	0.889	INTRON Rbp6
2R	13212237	2R_13212237_SNP [dm3] 2R_17324732_SNP [dm6]	A	G	1.683e^-4	0.889	INTRON mbl
3R	10742971	3R_10742971_SNP [dm3] 3R_14917249_SNP [dm6]	A	G	1.684e^-4	0.889	INTERGENIC
3L	10345640	3L_10345640_SNP [dm3] 3L_10352540_SNP [dm6]	T	C	1.684e^-4	0.889	INTRON CR44327
2L	14871531	2L_14871531_SNP [dm3] 2L_14871531_SNP [dm6]	A	C	1.688e^-4	0.889	INTRON CG4480
2L	21909882	2L_21909882_SNP [dm3] 2L_21909882_SNP [dm6]	C	T	1.691e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
X	20262270	X_20262270_INS [dm3] X_20391243_INS [dm6]	A	ATCAATAATAATTCAA...	1.693e^-4	0.889	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9562922	2L_9562922_SNP [dm3] 2L_9562922_SNP [dm6]	T	C	1.697e^-4	0.889	INTRON jp
2R	15715373	2R_15715373_SNP [dm3] 2R_19827868_SNP [dm6]	T	C	1.705e^-4	0.889	SYNONYMOUS_CODING Toll-7	TF binding site mE1_TFBS_sens
X	8735244	X_8735244_SNP [dm3] X_8841211_SNP [dm6]	T	G	1.714e^-4	0.889	INTRON CG12075
3L	16724386	3L_16724386_DEL [dm3] 3L_16731286_DEL [dm6]	TAACAATATT	T	1.721e^-4	0.889	UPSTREAM Dbp73D INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	11318512	3L_11318512_SNP [dm3] 3L_11325412_SNP [dm6]	A	G	1.751e^-4	0.889	UPSTREAM CR44723 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	4232609	2R_4232609_SNP [dm3] 2R_8345104_SNP [dm6]	G	T	1.754e^-4	0.889	INTRON pdm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	4422045	2L_4422045_SNP [dm3] 2L_4422045_SNP [dm6]	G	C	1.758e^-4	0.889	INTRON CG15431
2L	15085179	2L_15085179_SNP [dm3] 2L_15085179_SNP [dm6]	A	C	1.759e^-4	0.889	INTRON CG15270
X	14320651	X_14320651_SNP [dm3] X_14426618_SNP [dm6]	A	G	1.764e^-4	0.889	INTRON dpr8
X	14320652	X_14320652_SNP [dm3] X_14426619_SNP [dm6]	T	G	1.764e^-4	0.889	INTRON dpr8
2R	19963664	2R_19963664_SNP [dm3] 2R_24076141_SNP [dm6]	G	A	1.775e^-4	0.889	DOWNSTREAM Mlp60A INTRON Mlp60A
3L	16485978	3L_16485978_SNP [dm3] 3L_16492878_SNP [dm6]	A	T	1.775e^-4	0.889	SYNONYMOUS_CODING CG42514 UTR_3_PRIME CG43373 INTRON CG33158	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	10553045	2R_10553045_INS [dm3] 2R_14665540_INS [dm6]	A	AGTA	1.777e^-4	0.889	UPSTREAM CG12861 DOWNSTREAM CG12860 INTERGENIC
3L	16725910	3L_16725910_SNP [dm3] 3L_16732810_SNP [dm6]	A	C	1.785e^-4	0.889	UPSTREAM CG9701 INTERGENIC
2L	5901184	2L_5901184_SNP [dm3] 2L_5901184_SNP [dm6]	G	T	1.799e^-4	0.889	UPSTREAM CR44579 INTERGENIC
2L	9562971	2L_9562971_SNP [dm3] 2L_9562971_SNP [dm6]	T	C	1.805e^-4	0.889	INTRON jp
3R	21492002	3R_21492002_SNP [dm3] 3R_25666280_SNP [dm6]	C	T	1.810e^-4	0.889	DOWNSTREAM RASSF8 INTRON Lgr3	TF binding site BDTNP1_TFBS_twi
2L	4410246	2L_4410246_SNP [dm3] 2L_4410246_SNP [dm6]	T	A	1.819e^-4	0.889	UPSTREAM CG43055 INTRON CG15431
2R	3261295	2R_3261295_SNP [dm3] 2R_7373790_SNP [dm6]	C	T	1.820e^-4	0.889	INTRON Dscam1	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7762204	2L_7762204_DEL [dm3] 2L_7762204_DEL [dm6]	GA	G	1.840e^-4	0.889	INTRON CG7196
2R	19889708	2R_19889708_SNP [dm3] 2R_24002185_SNP [dm6]	T	C	1.850e^-4	0.889	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_chinmo
3L	15728892	3L_15728892_SNP [dm3] 3L_15735792_SNP [dm6]	C	A	1.858e^-4	0.889	INTERGENIC
2R	16973642	2R_16973642_SNP [dm3] 2R_21086137_SNP [dm6]	G	A	1.866e^-4	0.889	SYNONYMOUS_CODING Treh	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18452073	2R_18452073_SNP [dm3] 2R_22564568_SNP [dm6]	G	A	1.873e^-4	0.889	SYNONYMOUS_CODING dnr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9567365	2L_9567365_SNP [dm3] 2L_9567365_SNP [dm6]	T	A	1.876e^-4	0.889	UPSTREAM jp DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	609953	3L_609953_SNP [dm3] 3L_609953_SNP [dm6]	T	A	1.878e^-4	0.889	UPSTREAM CR44513 INTERGENIC
2L	8325610	2L_8325610_SNP [dm3] 2L_8325610_SNP [dm6]	A	T	1.879e^-4	0.889	UPSTREAM CG7781 INTERGENIC
2R	19273310	2R_19273310_SNP [dm3] 2R_23385787_SNP [dm6]	T	A	1.880e^-4	0.889	UTR_3_PRIME CG30415 UPSTREAM CG30414 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3079481	2R_3079481_SNP [dm3] 2R_7191976_SNP [dm6]	T	G	1.880e^-4	0.889	INTRON pk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9571449	2L_9571449_SNP [dm3] 2L_9571449_SNP [dm6]	G	A	1.883e^-4	0.889	INTRON CG3838
3L	718514	3L_718514_SNP [dm3] 3L_718514_SNP [dm6]	A	G	1.888e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19871890	X_19871890_SNP [dm3] X_19977857_SNP [dm6]	C	T	1.892e^-4	0.889	INTERGENIC
2L	9564789	2L_9564789_SNP [dm3] 2L_9564789_SNP [dm6]	G	A	1.903e^-4	0.889	INTRON jp
2L	7760790	2L_7760790_SNP [dm3] 2L_7760790_SNP [dm6]	C	A	1.903e^-4	0.889	INTRON CG7196
3L	15763854	3L_15763854_SNP [dm3] 3L_15770754_SNP [dm6]	C	T	1.905e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14687837	2R_14687837_INS [dm3] 2R_18800332_INS [dm6]	G	GATAGCATAAATG...	1.906e^-4	0.889	INTRON l_2_08717	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	3167876	2R_3167876_DEL [dm3] 2R_7280371_DEL [dm6]	CAGAATTAGGC...	C	1.912e^-4	0.889	INTRON Incenp	TF binding site mE1_TFBS_cad
X	18396231	X_18396231_SNP [dm3] X_18502198_SNP [dm6]	C	T	1.915e^-4	0.889	SYNONYMOUS_CODING Wnt5 DOWNSTREAM Rad51D	TF binding site mE1_TFBS_cad
2L	9568674	2L_9568674_INS [dm3] 2L_9568674_INS [dm6]	A	AATTAA	1.917e^-4	0.889	UPSTREAM CG3838 EXON CR44149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	15299750	3R_15299750_SNP [dm3] 3R_19474028_SNP [dm6]	T	A	1.923e^-4	0.889	INTRON Dys
3R	21675748	3R_21675748_SNP [dm3] 3R_25850026_SNP [dm6]	A	C	1.923e^-4	0.889	DOWNSTREAM CG14545 INTERGENIC
3L	1317361	3L_1317361_SNP [dm3] 3L_1317361_SNP [dm6]	G	C	1.930e^-4	0.889	INTRON CG9153	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19871594	X_19871594_INS [dm3] X_19977561_INS [dm6]	A	AC	1.941e^-4	0.889	INTERGENIC
3L	4678248	3L_4678248_SNP [dm3] 3L_4678248_SNP [dm6]	G	A	1.953e^-4	0.889	DOWNSTREAM CG34266 INTRON axo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6103021	X_6103021_SNP [dm3] X_6208988_SNP [dm6]	T	C	1.955e^-4	0.889	INTERGENIC
3L	8516859	3L_8516859_SNP [dm3] 3L_8523759_SNP [dm6]	A	T	1.956e^-4	0.889	UTR_3_PRIME GstO1 UPSTREAM GstO2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
2L	7762374	2L_7762374_SNP [dm3] 2L_7762374_SNP [dm6]	G	A	1.957e^-4	0.889	INTRON CG7196
2L	7762719	2L_7762719_SNP [dm3] 2L_7762719_SNP [dm6]	C	T	1.957e^-4	0.889	INTRON CG7196
3L	20172264	3L_20172264_SNP [dm3] 3L_20179164_SNP [dm6]	C	T	1.958e^-4	0.889	INTRON CG42674	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	19496468	2R_19496468_SNP [dm3] 2R_23608945_SNP [dm6]	T	C	1.963e^-4	0.889	SYNONYMOUS_CODING CG4019 UPSTREAM CG4019 INTRON CG17664 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9576858	2L_9576858_SNP [dm3] 2L_9576858_SNP [dm6]	T	G	1.966e^-4	0.889	UPSTREAM Mtpalpha INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	7762250	2L_7762250_SNP [dm3] 2L_7762250_SNP [dm6]	C	G	1.967e^-4	0.889	INTRON CG7196
3L	4980497	3L_4980497_SNP [dm3] 3L_4980497_SNP [dm6]	C	T	1.973e^-4	0.889	SYNONYMOUS_CODING CG17030 UPSTREAM CR45685 INTRON Con	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	8993651	2L_8993651_SNP [dm3] 2L_8993651_SNP [dm6]	C	A	1.976e^-4	0.889	UPSTREAM CG17906 DOWNSTREAM alien & 1 other INTERGENIC
2L	9568752	2L_9568752_SNP [dm3] 2L_9568752_SNP [dm6]	T	G	1.981e^-4	0.889	UPSTREAM CG3838 EXON CR44149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	10247049	3L_10247049_SNP [dm3] 3L_10253949_SNP [dm6]	T	C	1.984e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	3153677	X_3153677_SNP [dm3] X_3259644_SNP [dm6]	A	G	1.991e^-4	0.889	INTRON dnc
2R	3161567	2R_3161567_SNP [dm3] 2R_7274062_SNP [dm6]	C	T	2.005e^-4	0.889	NON_SYNONYMOUS_CODING Br140	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21675880	3R_21675880_SNP [dm3] 3R_25850158_SNP [dm6]	A	G	2.006e^-4	0.889	DOWNSTREAM CG14545 INTERGENIC
X	19873291	X_19873291_INS [dm3] X_19979258_INS [dm6]	T	TTGATGT	2.008e^-4	0.889	INTERGENIC
2L	8619515	2L_8619515_SNP [dm3] 2L_8619515_SNP [dm6]	A	G	2.008e^-4	0.889	UPSTREAM tRNA:CR31602 INTRON Sema-1a
2L	9112617	2L_9112617_SNP [dm3] 2L_9112617_SNP [dm6]	C	T	2.021e^-4	0.889	SYNONYMOUS_CODING Or30a
3L	12638601	3L_12638601_MNP [dm3] 3L_12645501_MNP [dm6]	CCAAT	TTGTG	2.031e^-4	0.889	EXON CR32111
2R	19564920	2R_19564920_SNP [dm3] 2R_23677397_SNP [dm6]	C	T	2.033e^-4	0.889	SPLICE_SITE_REGION Pde8 INTRON Pde8	TF binding site mE1_TFBS_cad
2L	4285308	2L_4285308_SNP [dm3] 2L_4285308_SNP [dm6]	T	G	2.033e^-4	0.889	INTRON tutl	TF binding site BDTNP1_TFBS_dl
2R	16361205	2R_16361205_SNP [dm3] 2R_20473700_SNP [dm6]	T	G	2.035e^-4	0.889	INTRON CG12484
2L	8325613	2L_8325613_SNP [dm3] 2L_8325613_SNP [dm6]	C	A	2.036e^-4	0.889	UPSTREAM CG7781 INTERGENIC
2L	21805174	2L_21805174_SNP [dm3] 2L_21805174_SNP [dm6]	C	G	2.036e^-4	0.889	INTERGENIC
3L	20907550	3L_20907550_SNP [dm3] 3L_20914450_SNP [dm6]	A	C	2.044e^-4	0.889	UPSTREAM CR43930 INTERGENIC
2R	17078601	2R_17078601_SNP [dm3] 2R_21191096_SNP [dm6]	A	G	2.054e^-4	0.889	NON_SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12545025	2R_12545025_INS [dm3] 2R_16657520_INS [dm6]	T	TATTTCACTAAATCTGTAAA...	2.056e^-4	0.889	INTRON Picot
2L	8911346	2L_8911346_SNP [dm3] 2L_8911346_SNP [dm6]	G	T	2.059e^-4	0.889	INTRON CG34398
X	7611735	X_7611735_SNP [dm3] X_7717702_SNP [dm6]	A	G	2.059e^-4	0.889	INTRON CG15478
3L	3080579	3L_3080579_DEL [dm3] 3L_3080579_DEL [dm6]	ACGCGT	A	2.059e^-4	0.889	UPSTREAM CG11486 INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	12074302	3L_12074302_SNP [dm3] 3L_12081202_SNP [dm6]	T	A	2.064e^-4	0.889	INTRON Sema-5c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
X	13332290	X_13332290_SNP [dm3] X_13438257_SNP [dm6]	C	A	2.065e^-4	0.889	INTERGENIC
3R	10742970	3R_10742970_SNP [dm3] 3R_14917248_SNP [dm6]	A	G	2.069e^-4	0.889	INTERGENIC
2L	12294002	2L_12294002_SNP [dm3] 2L_12294002_SNP [dm6]	C	A	2.073e^-4	0.889	INTRON aret
2R	8338654	2R_8338654_SNP [dm3] 2R_12451149_SNP [dm6]	C	A	2.077e^-4	0.889	SYNONYMOUS_CODING Dyb INTRON Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	21193087	2L_21193087_SNP [dm3] 2L_21193087_SNP [dm6]	G	T	2.087e^-4	0.889	INTRON Ret	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	14301985	3R_14301985_SNP [dm3] 3R_18476263_SNP [dm6]	A	G	2.089e^-4	0.889	INTRON fru
2R	14724903	2R_14724903_SNP [dm3] 2R_18837398_SNP [dm6]	T	C	2.090e^-4	0.889	SYNONYMOUS_CODING CG15099 DOWNSTREAM CG15083
X	13608555	X_13608555_SNP [dm3] X_13714522_SNP [dm6]	T	C	2.098e^-4	0.889	DOWNSTREAM NnaD INTRON CG9940 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6808720	2L_6808720_SNP [dm3] 2L_6808720_SNP [dm6]	A	G	2.099e^-4	0.889	INTERGENIC
2R	13785050	2R_13785050_SNP [dm3] 2R_17897545_SNP [dm6]	T	G	2.100e^-4	0.889	INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19776757	3R_19776757_SNP [dm3] 3R_23951035_SNP [dm6]	A	G	2.103e^-4	0.889	INTERGENIC
3L	7138280	3L_7138280_SNP [dm3] 3L_7145180_SNP [dm6]	G	A	2.109e^-4	0.889	SPLICE_SITE_REGION corn INTRON corn
3L	7138294	3L_7138294_SNP [dm3] 3L_7145194_SNP [dm6]	G	C	2.109e^-4	0.889	INTRON corn
2L	9562967	2L_9562967_SNP [dm3] 2L_9562967_SNP [dm6]	G	A	2.111e^-4	0.889	INTRON jp
3R	5128197	3R_5128197_SNP [dm3] 3R_9302475_SNP [dm6]	C	T	2.113e^-4	0.889	INTRON CG8861
2R	17119206	2R_17119206_SNP [dm3] 2R_21231701_SNP [dm6]	G	T	2.115e^-4	0.889	INTRON ASPP
2L	9567355	2L_9567355_SNP [dm3] 2L_9567355_SNP [dm6]	A	G	2.115e^-4	0.889	UPSTREAM jp DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	20269051	X_20269051_SNP [dm3] X_20398024_SNP [dm6]	C	T	2.126e^-4	0.889	INTRON HERC2	transposable element FlyBase
2L	9568637	2L_9568637_SNP [dm3] 2L_9568637_SNP [dm6]	A	G	2.128e^-4	0.889	UPSTREAM CG3838 EXON CR44149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	1719487	3L_1719487_SNP [dm3] 3L_1719487_SNP [dm6]	G	A	2.129e^-4	0.889	SYNONYMOUS_CODING drpr INTRON drpr	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4015838	2L_4015838_SNP [dm3] 2L_4015838_SNP [dm6]	C	T	2.140e^-4	0.889	INTERGENIC
2L	9567388	2L_9567388_MNP [dm3] 2L_9567388_MNP [dm6]	ATTT	GAAA	2.141e^-4	0.889	UPSTREAM jp DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	13425379	3L_13425379_SNP [dm3] 3L_13432279_SNP [dm6]	T	A	2.146e^-4	0.889	UPSTREAM tRNA:V4:70BCb INTRON CG10713
3R	25736372	3R_25736372_SNP [dm3] 3R_29910650_SNP [dm6]	G	A	2.149e^-4	0.889	INTRON CG31036
3R	1792641	3R_1792641_SNP [dm3] 3R_5966919_SNP [dm6]	C	T	2.156e^-4	0.889	DOWNSTREAM CR44925 INTERGENIC
3R	1534005	3R_1534005_SNP [dm3] 3R_5708283_SNP [dm6]	T	C	2.161e^-4	0.889	INTRON plx
3L	4356715	3L_4356715_SNP [dm3] 3L_4356715_SNP [dm6]	T	A	2.166e^-4	0.889	INTRON Cip4
3L	9202308	3L_9202308_SNP [dm3] 3L_9209208_SNP [dm6]	A	T	2.168e^-4	0.889	UPSTREAM Slc45-1 INTERGENIC
2L	8809467	2L_8809467_INS [dm3] 2L_8809467_INS [dm6]	C	CC	2.182e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2R	3261315	2R_3261315_SNP [dm3] 2R_7373810_SNP [dm6]	A	G	2.188e^-4	0.889	INTRON Dscam1	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	8286930	X_8286930_DEL [dm3] X_8392897_DEL [dm6]	CC	C	2.198e^-4	0.889	INTERGENIC
2R	18452869	2R_18452869_SNP [dm3] 2R_22565364_SNP [dm6]	A	T	2.204e^-4	0.889	INTRON dnr1	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	20413777	3R_20413777_SNP [dm3] 3R_24588055_SNP [dm6]	C	G	2.205e^-4	0.889	INTRON mld	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	18199273	3L_18199273_SNP [dm3] 3L_18206173_SNP [dm6]	C	A	2.206e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	9567458	2L_9567458_SNP [dm3] 2L_9567458_SNP [dm6]	G	C	2.215e^-4	0.889	UPSTREAM jp DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	1792642	3R_1792642_SNP [dm3] 3R_5966920_SNP [dm6]	C	T	2.220e^-4	0.889	DOWNSTREAM CR44925 INTERGENIC
3L	14929721	3L_14929721_SNP [dm3] 3L_14936621_SNP [dm6]	G	A	2.220e^-4	0.889	INTRON DCX-EMAP
2L	5901812	2L_5901812_SNP [dm3] 2L_5901812_SNP [dm6]	A	C	2.230e^-4	0.889	INTERGENIC
3R	1673762	3R_1673762_SNP [dm3] 3R_5848040_SNP [dm6]	C	T	2.233e^-4	0.889	UTR_3_PRIME CG14676 UPSTREAM CR10991	TF binding site mE1_TFBS_cad
3R	1673776	3R_1673776_SNP [dm3] 3R_5848054_SNP [dm6]	C	T	2.233e^-4	0.889	UTR_3_PRIME CG14676 UPSTREAM CR10991	TF binding site mE1_TFBS_cad
3R	8429017	3R_8429017_SNP [dm3] 3R_12603295_SNP [dm6]	A	T	2.237e^-4	0.889	INTERGENIC
2L	9635848	2L_9635848_SNP [dm3] 2L_9635848_SNP [dm6]	T	C	2.242e^-4	0.889	INTRON Apoltp
2R	10332101	2R_10332101_SNP [dm3] 2R_14444596_SNP [dm6]	G	C	2.246e^-4	0.889	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3027223	3L_3027223_SNP [dm3] 3L_3027223_SNP [dm6]	C	T	2.277e^-4	0.889	UPSTREAM aly INTERGENIC
2L	8325904	2L_8325904_SNP [dm3] 2L_8325904_SNP [dm6]	A	T	2.279e^-4	0.889	UPSTREAM CG7781 INTERGENIC
3L	3080558	3L_3080558_SNP [dm3] 3L_3080558_SNP [dm6]	A	G	2.281e^-4	0.889	INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	8429011	3R_8429011_SNP [dm3] 3R_12603289_SNP [dm6]	A	G	2.281e^-4	0.889	INTERGENIC
2R	3077646	2R_3077646_SNP [dm3] 2R_7190141_SNP [dm6]	T	G	2.284e^-4	0.889	INTRON pk
3L	13425964	3L_13425964_SNP [dm3] 3L_13432864_SNP [dm6]	T	C	2.299e^-4	0.889	UPSTREAM tRNA:V4:70BCb DOWNSTREAM tRNA:V4:70BCa INTRON CG10713
3L	1696519	3L_1696519_SNP [dm3] 3L_1696519_SNP [dm6]	C	T	2.302e^-4	0.889	DOWNSTREAM CG12011 INTRON CG7991
X	6103026	X_6103026_SNP [dm3] X_6208993_SNP [dm6]	G	A	2.303e^-4	0.889	INTERGENIC
2R	18236271	2R_18236271_SNP [dm3] 2R_22348766_SNP [dm6]	T	C	2.304e^-4	0.889	SYNONYMOUS_CODING CG11298 INTRON Liprin-gamma
2L	18328673	2L_18328673_SNP [dm3] 2L_18328673_SNP [dm6]	G	C	2.306e^-4	0.889	INTRON Fas3
2L	5901886	2L_5901886_SNP [dm3] 2L_5901886_SNP [dm6]	T	A	2.306e^-4	0.889	INTERGENIC
3R	25315635	3R_25315635_SNP [dm3] 3R_29489913_SNP [dm6]	T	C	2.307e^-4	0.889	SYNONYMOUS_CODING CG2006 UPSTREAM CG2321 DOWNSTREAM Spase12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1942318	3L_1942318_SNP [dm3] 3L_1942318_SNP [dm6]	G	C	2.314e^-4	0.889	SYNONYMOUS_CODING Mfap1 DOWNSTREAM mu2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	1317359	3L_1317359_SNP [dm3] 3L_1317359_SNP [dm6]	C	A	2.325e^-4	0.889	INTRON CG9153	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18031871	3R_18031871_SNP [dm3] 3R_22206149_SNP [dm6]	C	T	2.327e^-4	0.889	INTRON SKIP & 1 other
2L	8911195	2L_8911195_SNP [dm3] 2L_8911195_SNP [dm6]	A	C	2.330e^-4	0.889	INTRON CG34398
3R	7117788	3R_7117788_SNP [dm3] 3R_11292066_SNP [dm6]	T	G	2.339e^-4	0.889	INTRON CR31386
2L	21802262	2L_21802262_SNP [dm3] 2L_21802262_SNP [dm6]	A	G	2.341e^-4	0.889	INTERGENIC
2L	21916384	2L_21916384_SNP [dm3] 2L_21916384_SNP [dm6]	C	G	2.342e^-4	0.889	UTR_5_PRIME CG11634
3L	18314647	3L_18314647_SNP [dm3] 3L_18321547_SNP [dm6]	C	T	2.345e^-4	0.889	INTERGENIC
2L	20404418	2L_20404418_SNP [dm3] 2L_20404418_SNP [dm6]	G	A	2.353e^-4	0.889	INTRON CG10947
3L	7003763	3L_7003763_SNP [dm3] 3L_7010663_SNP [dm6]	C	T	2.371e^-4	0.889	INTRON Mp
2L	9569168	2L_9569168_SNP [dm3] 2L_9569168_SNP [dm6]	C	T	2.373e^-4	0.889	START_GAINED CG3838 UTR_5_PRIME CG3838 UPSTREAM CR44149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14282282	2R_14282282_SNP [dm3] 2R_18394777_SNP [dm6]	C	T	2.374e^-4	0.889	SYNONYMOUS_CODING Idgf5
X	4536891	X_4536891_SNP [dm3] X_4642858_SNP [dm6]	G	C	2.383e^-4	0.889	INTRON CG3081 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24150129	3R_24150129_SNP [dm3] 3R_28324407_SNP [dm6]	G	A	2.390e^-4	0.889	SYNONYMOUS_CODING larp UTR_5_PRIME larp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14710903	X_14710903_SNP [dm3] X_14816870_SNP [dm6]	C	G	2.395e^-4	0.889	INTRON rut
3L	20172161	3L_20172161_SNP [dm3] 3L_20179061_SNP [dm6]	A	G	2.424e^-4	0.889	INTRON CG42674	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	21675747	3R_21675747_SNP [dm3] 3R_25850025_SNP [dm6]	A	C	2.427e^-4	0.889	DOWNSTREAM CG14545 INTERGENIC
3R	20830866	3R_20830866_SNP [dm3] 3R_25005144_SNP [dm6]	T	G	2.428e^-4	0.889	INTRON tnc
2L	15306818	2L_15306818_SNP [dm3] 2L_15306818_SNP [dm6]	C	G	2.429e^-4	0.889	INTERGENIC
3L	11017115	3L_11017115_SNP [dm3] 3L_11024015_SNP [dm6]	C	A	2.431e^-4	0.889	SYNONYMOUS_CODING Fad2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4678288	3L_4678288_SNP [dm3] 3L_4678288_SNP [dm6]	G	A	2.444e^-4	0.889	DOWNSTREAM CG34266 INTRON axo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11724772	2R_11724772_SNP [dm3] 2R_15837267_SNP [dm6]	C	T	2.445e^-4	0.889	INTRON tun	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	521788	3R_521788_SNP [dm3] 3R_4696066_SNP [dm6]	T	A	2.455e^-4	0.889	INTRON CG43427
2R	17726199	2R_17726199_SNP [dm3] 2R_21838694_SNP [dm6]	T	C	2.456e^-4	0.889	SYNONYMOUS_CODING CG4372
2L	9561419	2L_9561419_SNP [dm3] 2L_9561419_SNP [dm6]	T	A	2.457e^-4	0.889	UPSTREAM jp INTRON jp
3L	10344903	3L_10344903_SNP [dm3] 3L_10351803_SNP [dm6]	C	T	2.459e^-4	0.889	INTRON CR44327
2L	3116269	2L_3116269_SNP [dm3] 2L_3116269_SNP [dm6]	T	C	2.466e^-4	0.889	INTRON toc
2L	21095999	2L_21095999_DEL [dm3] 2L_21095999_DEL [dm6]	ACA	A	2.470e^-4	0.889	UPSTREAM CG34136 INTRON CG12050
2L	13796362	2L_13796362_SNP [dm3] 2L_13796362_SNP [dm6]	T	C	2.471e^-4	0.889	SYNONYMOUS_CODING Sec71	TF binding site mE1_TFBS_cad
3R	24727035	3R_24727035_SNP [dm3] 3R_28901313_SNP [dm6]	C	T	2.477e^-4	0.889	INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	1526091	3R_1526091_SNP [dm3] 3R_5700369_SNP [dm6]	C	T	2.482e^-4	0.889	INTRON plx	TF binding site BDTNP1_TFBS_dl
3R	4718932	3R_4718932_DEL [dm3] 3R_8893210_DEL [dm6]	GA	T	2.485e^-4	0.889	INTRON pyd
2L	10318211	2L_10318211_SNP [dm3] 2L_10318211_SNP [dm6]	C	T	2.488e^-4	0.889	NON_SYNONYMOUS_CODING CG5381 DOWNSTREAM CG4972	TF binding site mE1_TFBS_sens
2L	9873042	2L_9873042_SNP [dm3] 2L_9873042_SNP [dm6]	G	A	2.491e^-4	0.889	INTRON nAChRalpha6
3L	677254	3L_677254_SNP [dm3] 3L_677254_SNP [dm6]	T	A	2.495e^-4	0.889	DOWNSTREAM CG17129 INTERGENIC
3L	1233699	3L_1233699_SNP [dm3] 3L_1233699_SNP [dm6]	T	C	2.498e^-4	0.889	UPSTREAM CG33966 DOWNSTREAM mwh INTRON CG33965	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1233700	3L_1233700_SNP [dm3] 3L_1233700_SNP [dm6]	T	C	2.498e^-4	0.889	UPSTREAM CG33966 DOWNSTREAM mwh INTRON CG33965	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10424471	3L_10424471_SNP [dm3] 3L_10431371_SNP [dm6]	T	A	2.509e^-4	0.889	NON_SYNONYMOUS_CODING Ir67b
3R	10742973	3R_10742973_SNP [dm3] 3R_14917251_SNP [dm6]	G	T	2.514e^-4	0.889	INTERGENIC
3L	9716472	3L_9716472_SNP [dm3] 3L_9723372_SNP [dm6]	T	G	2.515e^-4	0.889	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	22909676	3R_22909676_SNP [dm3] 3R_27083954_SNP [dm6]	G	A	2.520e^-4	0.889	INTRON Cpr97Ea	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11220609	3L_11220609_SNP [dm3] 3L_11227509_SNP [dm6]	T	A	2.521e^-4	0.889	INTRON CG42671
2L	3126389	2L_3126389_SNP [dm3] 2L_3126389_SNP [dm6]	C	T	2.522e^-4	0.889	NON_SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	20269047	X_20269047_SNP [dm3] X_20398020_SNP [dm6]	G	T	2.534e^-4	0.889	INTRON HERC2	transposable element FlyBase
2R	19861371	2R_19861371_SNP [dm3] 2R_23973848_SNP [dm6]	G	A	2.541e^-4	0.889	SYNONYMOUS_CODING mr	TF binding site mE1_TFBS_sens
2L	22020566	2L_22020566_SNP [dm3] 2L_22020566_SNP [dm6]	A	G	2.545e^-4	0.889	DOWNSTREAM CR33987 INTRON tio
2L	8325888	2L_8325888_SNP [dm3] 2L_8325888_SNP [dm6]	A	G	2.546e^-4	0.889	UPSTREAM CG7781 INTERGENIC
3L	8589983	3L_8589983_SNP [dm3] 3L_8596883_SNP [dm6]	A	G	2.546e^-4	0.889	SYNONYMOUS_CODING CG43078 DOWNSTREAM CG43078	TF binding site mE1_TFBS_chinmo
3R	10654019	3R_10654019_INS [dm3] 3R_14828297_INS [dm6]	T	TTCT	2.549e^-4	0.889	INTRON btsz
2L	6026324	2L_6026324_SNP [dm3] 2L_6026324_SNP [dm6]	A	T	2.556e^-4	0.889	INTRON CG9109
2L	5066476	2L_5066476_SNP [dm3] 2L_5066476_SNP [dm6]	A	T	2.561e^-4	0.889	INTRON qtc
2L	9567398	2L_9567398_SNP [dm3] 2L_9567398_SNP [dm6]	T	G	2.563e^-4	0.889	UPSTREAM jp DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	8911170	2L_8911170_SNP [dm3] 2L_8911170_SNP [dm6]	A	T	2.571e^-4	0.889	INTRON CG34398
3L	3279582	3L_3279582_SNP [dm3] 3L_3279582_SNP [dm6]	T	C	2.576e^-4	0.889	UPSTREAM CG12017 INTERGENIC
X	13551185	X_13551185_SNP [dm3] X_13657152_SNP [dm6]	A	C	2.585e^-4	0.889	INTRON NFAT
3L	332433	3L_332433_SNP [dm3] 3L_332433_SNP [dm6]	A	G	2.587e^-4	0.889	UPSTREAM mthl9 DOWNSTREAM mthl10 INTRON Ptpmeg	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	9945362	3L_9945362_SNP [dm3] 3L_9952262_SNP [dm6]	C	T	2.590e^-4	0.889	SYNONYMOUS_CODING CG34356
2R	7392754	2R_7392754_SNP [dm3] 2R_11505249_SNP [dm6]	A	C	2.593e^-4	0.889	INTRON inv
X	3193452	X_3193452_SNP [dm3] X_3299419_SNP [dm6]	G	C	2.605e^-4	0.889	INTRON dnc	TF binding site mE1_TFBS_HSA
X	3193455	X_3193455_SNP [dm3] X_3299422_SNP [dm6]	G	C	2.605e^-4	0.889	INTRON dnc	TF binding site mE1_TFBS_HSA
3L	15404290	3L_15404290_SNP [dm3] 3L_15411190_SNP [dm6]	A	G	2.607e^-4	0.889	INTERGENIC
3R	5902449	3R_5902449_SNP [dm3] 3R_10076727_SNP [dm6]	T	G	2.610e^-4	0.889	INTERGENIC
2L	9567404	2L_9567404_SNP [dm3] 2L_9567404_SNP [dm6]	T	A	2.613e^-4	0.889	UPSTREAM jp DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	20347817	2R_20347817_SNP [dm3] 2R_24460294_SNP [dm6]	T	C	2.617e^-4	0.889	INTRON CG13579
2L	9567417	2L_9567417_SNP [dm3] 2L_9567417_SNP [dm6]	A	T	2.620e^-4	0.889	UPSTREAM jp DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9567422	2L_9567422_SNP [dm3] 2L_9567422_SNP [dm6]	T	A	2.620e^-4	0.889	UPSTREAM jp DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	15663837	3R_15663837_SNP [dm3] 3R_19838115_SNP [dm6]	T	A	2.630e^-4	0.889	INTERGENIC
3L	16509281	3L_16509281_SNP [dm3] 3L_16516181_SNP [dm6]	T	G	2.634e^-4	0.889	INTRON CG43373
3L	16509282	3L_16509282_SNP [dm3] 3L_16516182_SNP [dm6]	T	A	2.634e^-4	0.889	INTRON CG43373
3L	20907441	3L_20907441_INS [dm3] 3L_20914341_INS [dm6]	C	CT	2.637e^-4	0.889	UPSTREAM CR43930 INTERGENIC
X	20269038	X_20269038_SNP [dm3] X_20398011_SNP [dm6]	C	A	2.642e^-4	0.889	INTRON HERC2	transposable element FlyBase
2L	12294007	2L_12294007_SNP [dm3] 2L_12294007_SNP [dm6]	A	C	2.648e^-4	0.889	INTRON aret
3L	10342087	3L_10342087_SNP [dm3] 3L_10348987_SNP [dm6]	G	A	2.654e^-4	0.889	INTRON CR44327
2R	18460132	2R_18460132_SNP [dm3] 2R_22572627_SNP [dm6]	T	G	2.658e^-4	0.889	INTRON dnr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1248224	3L_1248224_SNP [dm3] 3L_1248224_SNP [dm6]	C	T	2.664e^-4	0.889	UPSTREAM Psf1 INTRON Sac1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13903297	2L_13903297_SNP [dm3] 2L_13903297_SNP [dm6]	T	C	2.666e^-4	0.889	SYNONYMOUS_CODING Smg5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	15266826	3R_15266826_SNP [dm3] 3R_19441104_SNP [dm6]	T	C	2.667e^-4	0.889	INTRON CG31221
2R	9103634	2R_9103634_SNP [dm3] 2R_13216129_SNP [dm6]	C	T	2.674e^-4	0.889	DOWNSTREAM CG4627 INTRON CG4630
2R	19235372	2R_19235372_SNP [dm3] 2R_23347849_SNP [dm6]	T	A	2.674e^-4	0.889	UPSTREAM CG3502 DOWNSTREAM CG9863 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2L	12079764	2L_12079764_SNP [dm3] 2L_12079764_SNP [dm6]	G	A	2.675e^-4	0.889	EXON CR44591	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	13663163	X_13663163_SNP [dm3] X_13769130_SNP [dm6]	T	C	2.680e^-4	0.889	INTRON rdgB	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	17076891	X_17076891_SNP [dm3] X_17182858_SNP [dm6]	A	G	2.682e^-4	0.889	DOWNSTREAM CR44026 INTRON baz
3L	1879831	3L_1879831_SNP [dm3] 3L_1879831_SNP [dm6]	G	A	2.684e^-4	0.889	INTRON CG13937
3R	1587522	3R_1587522_SNP [dm3] 3R_5761800_SNP [dm6]	A	T	2.699e^-4	0.889	INTRON CG2082
2R	19861620	2R_19861620_SNP [dm3] 2R_23974097_SNP [dm6]	A	G	2.700e^-4	0.889	SYNONYMOUS_CODING mr	TF binding site mE1_TFBS_sens
2L	9562332	2L_9562332_SNP [dm3] 2L_9562332_SNP [dm6]	T	A	2.702e^-4	0.889	INTRON jp
3R	13170671	3R_13170671_SNP [dm3] 3R_17344949_SNP [dm6]	T	C	2.722e^-4	0.889	INTRON beat-IIa
2L	8993759	2L_8993759_SNP [dm3] 2L_8993759_SNP [dm6]	C	T	2.730e^-4	0.889	UPSTREAM CG17906 DOWNSTREAM alien & 1 other INTERGENIC
2R	11467386	2R_11467386_SNP [dm3] 2R_15579881_SNP [dm6]	G	A	2.736e^-4	0.889	INTERGENIC
2L	2008323	2L_2008323_SNP [dm3] 2L_2008323_SNP [dm6]	T	A	2.738e^-4	0.889	UPSTREAM Nplp4 & 1 other DOWNSTREAM CR45712 INTERGENIC	TF binding site mE1_TFBS_cad
3L	10506317	3L_10506317_SNP [dm3] 3L_10513217_SNP [dm6]	A	G	2.741e^-4	0.889	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
2R	16303177	2R_16303177_SNP [dm3] 2R_20415672_SNP [dm6]	C	T	2.741e^-4	0.889	INTERGENIC
3L	6840407	3L_6840407_SNP [dm3] 3L_6847307_SNP [dm6]	T	A	2.743e^-4	0.889	INTERGENIC	TF binding site mE1_TFBS_inv
X	19873199	X_19873199_INS [dm3] X_19979166_INS [dm6]	T	TCTGTAGTT	2.748e^-4	0.889	INTERGENIC
3L	9745630	3L_9745630_SNP [dm3] 3L_9752530_SNP [dm6]	A	T	2.756e^-4	0.889	UPSTREAM CG42268 INTRON CG42268	TF binding site mE1_TFBS_bab1
3L	10699625	3L_10699625_SNP [dm3] 3L_10706525_SNP [dm6]	C	A	2.758e^-4	0.889	INTERGENIC
3L	3279657	3L_3279657_SNP [dm3] 3L_3279657_SNP [dm6]	T	A	2.763e^-4	0.889	UPSTREAM CG12017 INTERGENIC
X	17945957	X_17945957_SNP [dm3] X_18051924_SNP [dm6]	T	A	2.773e^-4	0.889	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	388595	2L_388595_SNP [dm3] 2L_388595_SNP [dm6]	G	T	2.775e^-4	0.889	INTERGENIC
3R	1607437	3R_1607437_SNP [dm3] 3R_5781715_SNP [dm6]	C	T	2.778e^-4	0.889	UPSTREAM kat-60L1 & 1 other DOWNSTREAM jagn INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	1248477	3R_1248477_SNP [dm3] 3R_5422755_SNP [dm6]	C	G	2.781e^-4	0.889	INTRON CG14669
3L	8038032	3L_8038032_SNP [dm3] 3L_8044932_SNP [dm6]	C	G	2.782e^-4	0.889	INTRON nmo
3L	10861566	3L_10861566_SNP [dm3] 3L_10868466_SNP [dm6]	G	T	2.802e^-4	0.889	INTRON tna
3R	12172461	3R_12172461_SNP [dm3] 3R_16346739_SNP [dm6]	G	T	2.806e^-4	0.889	UTR_3_PRIME CG14879 DOWNSTREAM pad INTRON CG14879
2R	19276650	2R_19276650_SNP [dm3] 2R_23389127_SNP [dm6]	G	A	2.812e^-4	0.889	UTR_3_PRIME CG3530 DOWNSTREAM eIF2B-delta	TF binding site mE1_TFBS_chinmo
3L	1718447	3L_1718447_SNP [dm3] 3L_1718447_SNP [dm6]	T	C	2.813e^-4	0.889	INTRON drpr	TF binding site BDTNP1_TFBS_sna
3L	14100584	3L_14100584_SNP [dm3] 3L_14107484_SNP [dm6]	T	C	2.825e^-4	0.889	INTRON Sox21a	TF binding site BDTNP1_TFBS_dl
2L	16239657	2L_16239657_SNP [dm3] 2L_16239657_SNP [dm6]	C	T	2.832e^-4	0.889	INTRON CG42817
3R	16193152	3R_16193152_SNP [dm3] 3R_20367430_SNP [dm6]	A	C	2.833e^-4	0.889	INTERGENIC
3L	1733503	3L_1733503_SNP [dm3] 3L_1733503_SNP [dm6]	G	A	2.834e^-4	0.889	SYNONYMOUS_CODING Oseg4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17716626	2R_17716626_SNP [dm3] 2R_21829121_SNP [dm6]	T	G	2.842e^-4	0.889	SYNONYMOUS_CODING CG13492
3L	9332208	3L_9332208_SNP [dm3] 3L_9339108_SNP [dm6]	A	G	2.848e^-4	0.889	DOWNSTREAM PGRP-LA INTRON PGRP-LC
3R	1539189	3R_1539189_SNP [dm3] 3R_5713467_SNP [dm6]	T	A	2.851e^-4	0.889	UTR_3_PRIME cas DOWNSTREAM plx	TF binding site mE1_TFBS_cad
3R	15318419	3R_15318419_SNP [dm3] 3R_19492697_SNP [dm6]	T	G	2.854e^-4	0.889	INTRON Dys
2L	9566888	2L_9566888_SNP [dm3] 2L_9566888_SNP [dm6]	G	C	2.862e^-4	0.889	UPSTREAM jp INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	21879057	2L_21879057_SNP [dm3] 2L_21879057_SNP [dm6]	G	A	2.868e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11724086	2R_11724086_SNP [dm3] 2R_15836581_SNP [dm6]	A	G	2.870e^-4	0.889	INTRON tun	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens mE1_TFBS_Trl
3R	10437715	3R_10437715_SNP [dm3] 3R_14611993_SNP [dm6]	G	C	2.872e^-4	0.889	INTRON CG14853
3R	16004109	3R_16004109_INS [dm3] 3R_20178387_INS [dm6]	G	GCACCCTCTG	2.873e^-4	0.889	INTERGENIC
3L	7087021	3L_7087021_DEL [dm3] 3L_7093921_DEL [dm6]	TCG	T	2.881e^-4	0.889	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15402305	3L_15402305_SNP [dm3] 3L_15409205_SNP [dm6]	A	C	2.882e^-4	0.889	DOWNSTREAM CG33259 INTERGENIC
X	8534386	X_8534386_SNP [dm3] X_8640353_SNP [dm6]	T	C	2.883e^-4	0.889	SPLICE_SITE_REGION oc INTRON oc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19873194	X_19873194_INS [dm3] X_19979161_INS [dm6]	T	TT	2.890e^-4	0.889	INTERGENIC
2R	12388159	2R_12388159_SNP [dm3] 2R_16500654_SNP [dm6]	A	G	2.890e^-4	0.889	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	4053630	3L_4053630_SNP [dm3] 3L_4053630_SNP [dm6]	T	C	2.891e^-4	0.889	INTRON CG1136
2R	12828595	2R_12828595_SNP [dm3] 2R_16941090_SNP [dm6]	T	G	2.900e^-4	0.889	INTRON Pkc53E
3L	9726443	3L_9726443_SNP [dm3] 3L_9733343_SNP [dm6]	G	A	2.900e^-4	0.889	SPLICE_SITE_REGION CG6749 SYNONYMOUS_CODING CG6749 DOWNSTREAM mir-4986 & 1 other
2L	19512040	2L_19512040_SNP [dm3] 2L_19512040_SNP [dm6]	G	T	2.901e^-4	0.889	SYNONYMOUS_CODING CG10186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9561704	2L_9561704_SNP [dm3] 2L_9561704_SNP [dm6]	G	A	2.906e^-4	0.889	INTRON jp
2R	16838636	2R_16838636_SNP [dm3] 2R_20951131_SNP [dm6]	C	A	2.912e^-4	0.889	DOWNSTREAM CG33704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7842451	2L_7842451_SNP [dm3] 2L_7842451_SNP [dm6]	G	T	2.916e^-4	0.889	INTERGENIC
2L	9567411	2L_9567411_SNP [dm3] 2L_9567411_SNP [dm6]	T	C	2.919e^-4	0.889	UPSTREAM jp DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	1472998	3R_1472998_SNP [dm3] 3R_5647276_SNP [dm6]	G	A	2.929e^-4	0.889	UTR_5_PRIME MTA1-like INTRON MTA1-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_inv
3L	13552752	3L_13552752_SNP [dm3] 3L_13559652_SNP [dm6]	T	G	2.937e^-4	0.889	INTRON bru-3
2L	12153477	2L_12153477_SNP [dm3] 2L_12153477_SNP [dm6]	G	C	2.940e^-4	0.889	INTRON CG31760
3L	10880815	3L_10880815_SNP [dm3] 3L_10887715_SNP [dm6]	A	T	2.943e^-4	0.889	INTERGENIC
3L	338727	3L_338727_SNP [dm3] 3L_338727_SNP [dm6]	A	C	2.958e^-4	0.889	UTR_5_PRIME mthl10 INTRON Ptpmeg & 1 other	TF binding site BDTNP1_TFBS_prd
3L	9716328	3L_9716328_SNP [dm3] 3L_9723228_SNP [dm6]	C	T	2.962e^-4	0.889	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4678283	3L_4678283_SNP [dm3] 3L_4678283_SNP [dm6]	T	A	2.968e^-4	0.889	DOWNSTREAM CG34266 INTRON axo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18858626	2L_18858626_SNP [dm3] 2L_18858626_SNP [dm6]	A	G	2.968e^-4	0.889	UPSTREAM CG10602 DOWNSTREAM tup INTRON CG10602 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
3L	10478055	3L_10478055_SNP [dm3] 3L_10484955_SNP [dm6]	A	G	2.973e^-4	0.889	INTRON A2bp1
3L	20907418	3L_20907418_SNP [dm3] 3L_20914318_SNP [dm6]	C	A	2.974e^-4	0.889	UPSTREAM CR43930 INTERGENIC
3L	9732975	3L_9732975_SNP [dm3] 3L_9739875_SNP [dm6]	G	A	2.974e^-4	0.889	UPSTREAM CG42268 INTRON CG42268
2L	5346938	2L_5346938_SNP [dm3] 2L_5346938_SNP [dm6]	A	G	2.976e^-4	0.889	SYNONYMOUS_CODING nompC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9103793	2R_9103793_SNP [dm3] 2R_13216288_SNP [dm6]	G	A	2.976e^-4	0.889	DOWNSTREAM CG4627 INTRON CG4630
2R	16361612	2R_16361612_SNP [dm3] 2R_20474107_SNP [dm6]	A	G	2.976e^-4	0.889	INTRON CG12484
2R	3079221	2R_3079221_SNP [dm3] 2R_7191716_SNP [dm6]	C	A	2.980e^-4	0.889	INTRON pk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9569217	2L_9569217_SNP [dm3] 2L_9569217_SNP [dm6]	G	C	2.984e^-4	0.889	UPSTREAM CR44149 INTRON CG3838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	18309144	X_18309144_SNP [dm3] X_18415111_SNP [dm6]	C	T	2.984e^-4	0.889	UPSTREAM CG15056 INTERGENIC	transposable element FlyBase
3R	18551386	3R_18551386_SNP [dm3] 3R_22725664_SNP [dm6]	T	C	2.989e^-4	0.889	SYNONYMOUS_CODING CG4813 DOWNSTREAM CR45648	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10532559	2L_10532559_SNP [dm3] 2L_10532559_SNP [dm6]	T	A	3.006e^-4	0.889	DOWNSTREAM Lip4 INTRON CG18301
X	18222848	X_18222848_SNP [dm3] X_18328815_SNP [dm6]	G	C	3.017e^-4	0.889	INTRON CG6123
3L	10699469	3L_10699469_DEL [dm3] 3L_10706369_DEL [dm6]	AGGTAAAAACG...	A	3.022e^-4	0.889	INTERGENIC
X	20268728	X_20268728_INS [dm3] X_20397701_INS [dm6]	T	TCTCTTCCTTAGCTTGTTAG...	3.023e^-4	0.889	INTRON HERC2	transposable element FlyBase
3L	11651394	3L_11651394_SNP [dm3] 3L_11658294_SNP [dm6]	C	T	3.023e^-4	0.889	INTRON CG32085
2R	3969167	2R_3969167_SNP [dm3] 2R_8081662_SNP [dm6]	T	G	3.034e^-4	0.889	INTRON slv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4921687	2R_4921687_SNP [dm3] 2R_9034182_SNP [dm6]	A	T	3.037e^-4	0.889	INTERGENIC
3L	5692639	3L_5692639_SNP [dm3] 3L_5699539_SNP [dm6]	C	G	3.037e^-4	0.889	INTRON sif	TF binding site mE1_TFBS_chinmo
2R	17978686	2R_17978686_SNP [dm3] 2R_22091181_SNP [dm6]	A	G	3.044e^-4	0.889	NON_SYNONYMOUS_CODING CG44163 UPSTREAM CG43393 DOWNSTREAM CG11073
2R	19857491	2R_19857491_SNP [dm3] 2R_23969968_SNP [dm6]	C	A	3.044e^-4	0.889	SYNONYMOUS_CODING CG10904 UPSTREAM CG3065	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Ubx
3R	15396891	3R_15396891_SNP [dm3] 3R_19571169_SNP [dm6]	T	C	3.054e^-4	0.889	INTRON Dys	TF binding site BDTNP1_TFBS_z
2L	15090507	2L_15090507_SNP [dm3] 2L_15090507_SNP [dm6]	T	C	3.058e^-4	0.889	INTRON CG15270
3L	3306824	3L_3306824_SNP [dm3] 3L_3306824_SNP [dm6]	A	G	3.063e^-4	0.889	INTRON ZnT63C	TF binding site BDTNP1_TFBS_dl
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	3.065e^-4	0.889	INTRON dnc
2R	19853538	2R_19853538_SNP [dm3] 2R_23966015_SNP [dm6]	A	G	3.075e^-4	0.889	SYNONYMOUS_CODING Alas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21116859	X_21116859_SNP [dm3] X_21245832_SNP [dm6]	G	A	3.075e^-4	0.889	INTRON CG32521
X	5741432	X_5741432_SNP [dm3] X_5847399_SNP [dm6]	C	T	3.080e^-4	0.889	INTERGENIC
X	19870681	X_19870681_SNP [dm3] X_19976648_SNP [dm6]	T	C	3.088e^-4	0.889	INTERGENIC
3L	9716331	3L_9716331_SNP [dm3] 3L_9723231_SNP [dm6]	C	T	3.094e^-4	0.889	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16866821	2R_16866821_SNP [dm3] 2R_20979316_SNP [dm6]	G	T	3.098e^-4	0.889	UTR_5_PRIME CG9313 UPSTREAM CG9313 & 1 other
2L	16239646	2L_16239646_SNP [dm3] 2L_16239646_SNP [dm6]	T	C	3.105e^-4	0.889	INTRON CG42817
3L	16724467	3L_16724467_SNP [dm3] 3L_16731367_SNP [dm6]	G	A	3.109e^-4	0.889	UPSTREAM Dbp73D INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12293941	2L_12293941_SNP [dm3] 2L_12293941_SNP [dm6]	T	C	3.109e^-4	0.889	INTRON aret
3L	3279645	3L_3279645_SNP [dm3] 3L_3279645_SNP [dm6]	T	A	3.122e^-4	0.889	UPSTREAM CG12017 INTERGENIC
2L	3112764	2L_3112764_SNP [dm3] 2L_3112764_SNP [dm6]	G	T	3.126e^-4	0.889	UPSTREAM toc INTRON toc
3L	2698074	3L_2698074_SNP [dm3] 3L_2698074_SNP [dm6]	A	T	3.132e^-4	0.889	INTRON Fife
2R	11467404	2R_11467404_SNP [dm3] 2R_15579899_SNP [dm6]	C	G	3.147e^-4	0.889	INTERGENIC
2R	8137678	2R_8137678_SNP [dm3] 2R_12250173_SNP [dm6]	T	C	3.157e^-4	0.889	INTERGENIC
2R	4233744	2R_4233744_SNP [dm3] 2R_8346239_SNP [dm6]	T	C	3.160e^-4	0.889	INTRON pdm3	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	4233746	2R_4233746_INS [dm3] 2R_8346241_INS [dm6]	T	TTATATCTTATTAT...	3.160e^-4	0.889	INTRON pdm3	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	6524489	2L_6524489_SNP [dm3] 2L_6524489_SNP [dm6]	C	T	3.165e^-4	0.889	INTRON CG31637
2R	11467342	2R_11467342_SNP [dm3] 2R_15579837_SNP [dm6]	T	A	3.173e^-4	0.889	INTERGENIC
X	17101524	X_17101524_SNP [dm3] X_17207491_SNP [dm6]	C	G	3.176e^-4	0.889	SYNONYMOUS_CODING CG32564 UPSTREAM CG32563	TF binding site mE1_TFBS_chinmo
X	14232802	X_14232802_SNP [dm3] X_14338769_SNP [dm6]	A	C	3.181e^-4	0.889	INTRON dpr8
2L	9572815	2L_9572815_SNP [dm3] 2L_9572815_SNP [dm6]	A	G	3.184e^-4	0.889	SYNONYMOUS_CODING CG3838 DOWNSTREAM Mtpalpha
2L	8781091	2L_8781091_SNP [dm3] 2L_8781091_SNP [dm6]	T	A	3.197e^-4	0.889	DOWNSTREAM CG42710 INTRON CG9468
3R	18554843	3R_18554843_SNP [dm3] 3R_22729121_SNP [dm6]	C	T	3.198e^-4	0.889	UTR_5_PRIME CG45049 INTRON CG45049
3R	1654162	3R_1654162_SNP [dm3] 3R_5828440_SNP [dm6]	C	T	3.203e^-4	0.889	INTERGENIC	transposable element FlyBase
3L	10699766	3L_10699766_DEL [dm3] 3L_10706666_DEL [dm6]	AAATCTAAAAATATTAAACC...	A	3.205e^-4	0.889	INTERGENIC
3L	10699790	3L_10699790_DEL [dm3] 3L_10706690_DEL [dm6]	GAAAAC	G	3.205e^-4	0.889	INTERGENIC
2L	9562896	2L_9562896_SNP [dm3] 2L_9562896_SNP [dm6]	C	T	3.209e^-4	0.889	INTRON jp
2L	2276396	2L_2276396_SNP [dm3] 2L_2276396_SNP [dm6]	A	T	3.211e^-4	0.889	INTRON CR43753
2L	2276405	2L_2276405_SNP [dm3] 2L_2276405_SNP [dm6]	T	G	3.211e^-4	0.889	INTRON CR43753
2L	6706434	2L_6706434_SNP [dm3] 2L_6706434_SNP [dm6]	A	G	3.217e^-4	0.889	INTRON Tsp
2R	14691692	2R_14691692_SNP [dm3] 2R_18804187_SNP [dm6]	C	T	3.222e^-4	0.889	UPSTREAM l_2_08717 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	1405894	3L_1405894_SNP [dm3] 3L_1405894_SNP [dm6]	A	G	3.228e^-4	0.889	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	14201625	3L_14201625_SNP [dm3] 3L_14208525_SNP [dm6]	G	A	3.233e^-4	0.889	INTRON nuf	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	901634	2R_901634_SNP [dm3] 2R_5014129_SNP [dm6]	A	T	3.234e^-4	0.889	INTRON Ir41a
2R	1589982	2R_1589982_SNP [dm3] 2R_5702477_SNP [dm6]	A	T	3.246e^-4	0.889	UPSTREAM vlc INTRON vlc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9936741	3L_9936741_SNP [dm3] 3L_9943641_SNP [dm6]	A	C	3.262e^-4	0.889	INTRON CG34356
2R	8136809	2R_8136809_SNP [dm3] 2R_12249304_SNP [dm6]	G	T	3.264e^-4	0.889	INTERGENIC
3L	7559715	3L_7559715_SNP [dm3] 3L_7566615_SNP [dm6]	C	T	3.272e^-4	0.889	SYNONYMOUS_CODING frac INTRON frac	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	715512	3L_715512_SNP [dm3] 3L_715512_SNP [dm6]	A	G	3.274e^-4	0.889	UPSTREAM CR45411 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	20269035	X_20269035_SNP [dm3] X_20398008_SNP [dm6]	A	T	3.293e^-4	0.889	INTRON HERC2	transposable element FlyBase
3L	8233634	3L_8233634_DEL [dm3] 3L_8240534_DEL [dm6]	TT	T	3.294e^-4	0.889	UTR_5_PRIME CG7213 UPSTREAM Dscam4 INTRON Dscam4
3L	9716464	3L_9716464_SNP [dm3] 3L_9723364_SNP [dm6]	A	T	3.299e^-4	0.889	UPSTREAM defl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17717374	2R_17717374_SNP [dm3] 2R_21829869_SNP [dm6]	G	T	3.302e^-4	0.889	SYNONYMOUS_CODING CG13492
2R	563639	2R_563639_SNP [dm3] 2R_4676134_SNP [dm6]	C	T	3.306e^-4	0.889	INTERGENIC	transposable element FlyBase
X	8184673	X_8184673_SNP [dm3] X_8290640_SNP [dm6]	G	A	3.307e^-4	0.889	INTRON nAChRalpha3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6283162	3L_6283162_SNP [dm3] 3L_6290062_SNP [dm6]	A	G	3.309e^-4	0.889	INTERGENIC
2L	10866620	2L_10866620_SNP [dm3] 2L_10866620_SNP [dm6]	T	A	3.314e^-4	0.889	INTERGENIC
2L	9563825	2L_9563825_SNP [dm3] 2L_9563825_SNP [dm6]	T	C	3.315e^-4	0.889	INTRON jp
2L	1705417	2L_1705417_SNP [dm3] 2L_1705417_SNP [dm6]	C	T	3.318e^-4	0.889	SYNONYMOUS_CODING cpb DOWNSTREAM chinmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	8325782	2L_8325782_SNP [dm3] 2L_8325782_SNP [dm6]	G	T	3.318e^-4	0.889	UPSTREAM CG7781 INTERGENIC
3R	1246764	3R_1246764_SNP [dm3] 3R_5421042_SNP [dm6]	T	A	3.327e^-4	0.889	INTRON CG14669
2R	16541982	2R_16541982_SNP [dm3] 2R_20654477_SNP [dm6]	T	A	3.332e^-4	0.889	INTRON Lrt & 1 other
2L	15084985	2L_15084985_SNP [dm3] 2L_15084985_SNP [dm6]	A	T	3.335e^-4	0.889	INTRON CG15270
3R	26587384	3R_26587384_SNP [dm3] 3R_30761662_SNP [dm6]	A	T	3.336e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16726691	3L_16726691_DEL [dm3] 3L_16733591_DEL [dm6]	CAAC	C	3.339e^-4	0.889	UTR_5_PRIME CG9701
X	19873187	X_19873187_INS [dm3] X_19979154_INS [dm6]	A	ATTTTCTATTAAGAGATAT...	3.340e^-4	0.889	INTERGENIC
X	15803479	X_15803479_SNP [dm3] X_15909446_SNP [dm6]	A	C	3.345e^-4	0.889	UTR_5_PRIME CycD INTRON CycD	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	9657856	2R_9657856_SNP [dm3] 2R_13770351_SNP [dm6]	A	T	3.346e^-4	0.889	INTRON Cpr50Ca
2R	16541981	2R_16541981_SNP [dm3] 2R_20654476_SNP [dm6]	T	A	3.351e^-4	0.889	INTRON Lrt & 1 other
3L	13425563	3L_13425563_SNP [dm3] 3L_13432463_SNP [dm6]	T	C	3.359e^-4	0.889	UPSTREAM tRNA:V4:70BCb INTRON CG10713
3R	27017229	3R_27017229_SNP [dm3] 3R_31191507_SNP [dm6]	A	G	3.361e^-4	0.889	SPLICE_SITE_REGION mesh SYNONYMOUS_CODING mesh
3L	616284	3L_616284_SNP [dm3] 3L_616284_SNP [dm6]	A	G	3.368e^-4	0.889	EXON CR42719	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	677256	3L_677256_SNP [dm3] 3L_677256_SNP [dm6]	G	T	3.372e^-4	0.889	DOWNSTREAM CG17129 INTERGENIC
2L	21380352	2L_21380352_SNP [dm3] 2L_21380352_SNP [dm6]	A	C	3.376e^-4	0.889	UTR_5_PRIME nrv3
3L	12647804	3L_12647804_SNP [dm3] 3L_12654704_SNP [dm6]	A	T	3.379e^-4	0.889	INTERGENIC
2L	9946962	2L_9946962_SNP [dm3] 2L_9946962_SNP [dm6]	A	C	3.383e^-4	0.889	INTRON CG5853
3R	7365940	3R_7365940_SNP [dm3] 3R_11540218_SNP [dm6]	C	T	3.387e^-4	0.889	INTRON dpr4
2R	9571508	2R_9571508_SNP [dm3] 2R_13684003_SNP [dm6]	T	G	3.393e^-4	0.889	INTRON fas
3L	18197536	3L_18197536_SNP [dm3] 3L_18204436_SNP [dm6]	T	C	3.399e^-4	0.889	DOWNSTREAM CG7320 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
X	20356036	X_20356036_SNP [dm3] X_20485009_SNP [dm6]	A	C	3.413e^-4	0.889	INTRON RhoGAP19D
2R	16523673	2R_16523673_SNP [dm3] 2R_20636168_SNP [dm6]	A	C	3.424e^-4	0.889	UPSTREAM CG13436 INTRON rig
3L	15168016	3L_15168016_SNP [dm3] 3L_15174916_SNP [dm6]	C	T	3.429e^-4	0.889	INTERGENIC
2R	19858441	2R_19858441_SNP [dm3] 2R_23970918_SNP [dm6]	A	C	3.435e^-4	0.889	NON_SYNONYMOUS_CODING CG3065 UPSTREAM CG10904	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	19870885	X_19870885_SNP [dm3] X_19976852_SNP [dm6]	T	C	3.441e^-4	0.889	INTERGENIC
2L	9563913	2L_9563913_SNP [dm3] 2L_9563913_SNP [dm6]	T	C	3.444e^-4	0.889	INTRON jp
3R	25733024	3R_25733024_SNP [dm3] 3R_29907302_SNP [dm6]	T	C	3.445e^-4	0.889	UPSTREAM CG31036 DOWNSTREAM CG15515 INTERGENIC
3L	17798583	3L_17798583_SNP [dm3] 3L_17805483_SNP [dm6]	G	A	3.451e^-4	0.889	SYNONYMOUS_CODING CG32187 UPSTREAM CG5589 DOWNSTREAM CG32191	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	16988899	3R_16988899_SNP [dm3] 3R_21163177_SNP [dm6]	T	A	3.452e^-4	0.889	UPSTREAM CG5810 INTRON SNF4Agamma
2L	12293940	2L_12293940_SNP [dm3] 2L_12293940_SNP [dm6]	A	C	3.456e^-4	0.889	INTRON aret
2L	2939042	2L_2939042_SNP [dm3] 2L_2939042_SNP [dm6]	A	T	3.456e^-4	0.889	INTRON lilli	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	19054766	2R_19054766_SNP [dm3] 2R_23167243_SNP [dm6]	C	A	3.468e^-4	0.889	INTRON CG34371	TF binding site mE1_TFBS_chinmo
X	14488376	X_14488376_SNP [dm3] X_14594343_SNP [dm6]	T	G	3.482e^-4	0.889	INTRON CG9413
X	7613064	X_7613064_SNP [dm3] X_7719031_SNP [dm6]	A	G	3.486e^-4	0.889	INTERGENIC
X	8864790	X_8864790_SNP [dm3] X_8970757_SNP [dm6]	C	G	3.489e^-4	0.889	INTRON rdgA
2L	3124250	2L_3124250_SNP [dm3] 2L_3124250_SNP [dm6]	G	A	3.493e^-4	0.889	NON_SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_chinmo
3R	25367567	3R_25367567_SNP [dm3] 3R_29541845_SNP [dm6]	G	A	3.495e^-4	0.889	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	19862331	2R_19862331_SNP [dm3] 2R_23974808_SNP [dm6]	G	A	3.495e^-4	0.889	DOWNSTREAM Gadd34 INTRON mr
X	5039294	X_5039294_SNP [dm3] X_5145261_SNP [dm6]	C	G	3.499e^-4	0.889	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl
2L	8325929	2L_8325929_SNP [dm3] 2L_8325929_SNP [dm6]	A	G	3.501e^-4	0.889	UPSTREAM CG7781 INTERGENIC
3R	27017288	3R_27017288_SNP [dm3] 3R_31191566_SNP [dm6]	T	C	3.502e^-4	0.889	INTRON mesh
2L	5086558	2L_5086558_SNP [dm3] 2L_5086558_SNP [dm6]	A	C	3.503e^-4	0.889	INTRON pgant5
2L	9109659	2L_9109659_SNP [dm3] 2L_9109659_SNP [dm6]	T	G	3.503e^-4	0.889	INTERGENIC
2R	19255028	2R_19255028_SNP [dm3] 2R_23367505_SNP [dm6]	C	T	3.504e^-4	0.889	SYNONYMOUS_CODING Ice1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	2331873	3L_2331873_SNP [dm3] 3L_2331873_SNP [dm6]	A	C	3.505e^-4	0.889	INTRON MsR1
2R	11573868	2R_11573868_SNP [dm3] 2R_15686363_SNP [dm6]	C	T	3.508e^-4	0.889	SYNONYMOUS_CODING Ranbp11 UPSTREAM CG30082	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3R	15389311	3R_15389311_SNP [dm3] 3R_19563589_SNP [dm6]	G	T	3.513e^-4	0.889	INTRON Dys
3L	12638593	3L_12638593_SNP [dm3] 3L_12645493_SNP [dm6]	T	A	3.520e^-4	0.889	EXON CR32111
2L	8324595	2L_8324595_SNP [dm3] 2L_8324595_SNP [dm6]	T	A	3.525e^-4	0.889	INTRON CG7781
3L	8517252	3L_8517252_SNP [dm3] 3L_8524152_SNP [dm6]	C	T	3.526e^-4	0.889	SYNONYMOUS_CODING GstO1 UPSTREAM GstO2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_ttk
3L	1982824	3L_1982824_SNP [dm3] 3L_1982824_SNP [dm6]	T	C	3.534e^-4	0.889	INTERGENIC
2R	3078631	2R_3078631_DEL [dm3] 2R_7191126_DEL [dm6]	TACT	T	3.536e^-4	0.889	INTRON pk	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3R	22198493	3R_22198493_SNP [dm3] 3R_26372771_SNP [dm6]	A	G	3.536e^-4	0.889	INTERGENIC
2L	11843466	2L_11843466_SNP [dm3] 2L_11843466_SNP [dm6]	A	C	3.542e^-4	0.889	UTR_5_PRIME CG42486 UTR_3_PRIME CG14933 UPSTREAM CG42486 INTRON Pde1c
X	18397487	X_18397487_INS [dm3] X_18503454_INS [dm6]	T	TGCTACT	3.555e^-4	0.889	CODON_INSERTION Wnt5	TF binding site mE1_TFBS_cad
2R	13212251	2R_13212251_SNP [dm3] 2R_17324746_SNP [dm6]	C	G	3.567e^-4	0.889	INTRON mbl
3L	338477	3L_338477_SNP [dm3] 3L_338477_SNP [dm6]	A	C	3.569e^-4	0.889	INTRON Ptpmeg & 1 other	TF binding site BDTNP1_TFBS_prd
2L	9946994	2L_9946994_SNP [dm3] 2L_9946994_SNP [dm6]	T	A	3.573e^-4	0.889	INTRON CG5853
X	10788843	X_10788843_SNP [dm3] X_10894810_SNP [dm6]	A	T	3.575e^-4	0.889	UTR_3_PRIME CG1582 DOWNSTREAM CG1582
2R	17731029	2R_17731029_SNP [dm3] 2R_21843524_SNP [dm6]	A	G	3.576e^-4	0.889	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	2886658	2L_2886658_DEL [dm3] 2L_2886658_DEL [dm6]	TTT	T	3.577e^-4	0.889	UPSTREAM NTPase INTRON lilli	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl mE1_TFBS_zfh1
2L	8325780	2L_8325780_SNP [dm3] 2L_8325780_SNP [dm6]	C	A	3.588e^-4	0.889	UPSTREAM CG7781 INTERGENIC
2L	17995747	2L_17995747_SNP [dm3] 2L_17995747_SNP [dm6]	C	T	3.590e^-4	0.889	INTERGENIC
X	18309100	X_18309100_SNP [dm3] X_18415067_SNP [dm6]	G	T	3.590e^-4	0.889	UPSTREAM CG15056 INTERGENIC	transposable element FlyBase
3R	25167501	3R_25167501_SNP [dm3] 3R_29341779_SNP [dm6]	A	G	3.592e^-4	0.889	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	9564109	2L_9564109_SNP [dm3] 2L_9564109_SNP [dm6]	G	A	3.593e^-4	0.889	INTRON jp
3R	15208326	3R_15208326_SNP [dm3] 3R_19382604_SNP [dm6]	C	T	3.595e^-4	0.889	INTRON Ino80
3R	24151899	3R_24151899_SNP [dm3] 3R_28326177_SNP [dm6]	A	T	3.600e^-4	0.889	UTR_5_PRIME larp INTRON larp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17723640	2R_17723640_SNP [dm3] 2R_21836135_SNP [dm6]	C	T	3.606e^-4	0.889	NON_SYNONYMOUS_CODING CG4377
3L	10507917	3L_10507917_SNP [dm3] 3L_10514817_SNP [dm6]	T	A	3.612e^-4	0.889	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2698076	3L_2698076_SNP [dm3] 3L_2698076_SNP [dm6]	T	C	3.612e^-4	0.889	INTRON Fife
3L	9738662	3L_9738662_SNP [dm3] 3L_9745562_SNP [dm6]	C	T	3.619e^-4	0.889	INTRON CG42268
3R	10507876	3R_10507876_SNP [dm3] 3R_14682154_SNP [dm6]	C	T	3.622e^-4	0.889	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	22297109	3R_22297109_SNP [dm3] 3R_26471387_SNP [dm6]	G	A	3.622e^-4	0.889	UTR_3_PRIME plum
2R	19851285	2R_19851285_SNP [dm3] 2R_23963762_SNP [dm6]	C	T	3.626e^-4	0.889	INTRON Fmo-1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	18318680	3L_18318680_SNP [dm3] 3L_18325580_SNP [dm6]	G	T	3.627e^-4	0.889	INTERGENIC
2R	13397936	2R_13397936_SNP [dm3] 2R_17510431_SNP [dm6]	A	G	3.627e^-4	0.889	UTR_3_PRIME CG34193
3R	1156820	3R_1156820_INS [dm3] 3R_5331098_INS [dm6]	A	AA	3.635e^-4	0.889	INTRON mtd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	9515416	3L_9515416_SNP [dm3] 3L_9522316_SNP [dm6]	T	C	3.640e^-4	0.889	INTRON CG33700
3R	26667135	3R_26667135_SNP [dm3] 3R_30841413_SNP [dm6]	A	C	3.640e^-4	0.889	UTR_3_PRIME CG15544	TF binding site mE1_TFBS_cad
3R	21876370	3R_21876370_SNP [dm3] 3R_26050648_SNP [dm6]	T	G	3.640e^-4	0.889	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9735810	3L_9735810_SNP [dm3] 3L_9742710_SNP [dm6]	C	A	3.651e^-4	0.889	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	18159767	X_18159767_SNP [dm3] X_18265734_SNP [dm6]	G	A	3.653e^-4	0.889	INTERGENIC
2L	11922202	2L_11922202_SNP [dm3] 2L_11922202_SNP [dm6]	G	A	3.657e^-4	0.889	INTRON Pde1c
3R	11859952	3R_11859952_SNP [dm3] 3R_16034230_SNP [dm6]	G	A	3.659e^-4	0.889	UPSTREAM pnr INTRON pnr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18223027	X_18223027_SNP [dm3] X_18328994_SNP [dm6]	T	A	3.660e^-4	0.889	SYNONYMOUS_CODING CG6123
2R	19862906	2R_19862906_SNP [dm3] 2R_23975383_SNP [dm6]	C	T	3.667e^-4	0.889	UTR_3_PRIME mr DOWNSTREAM Gadd34
2R	14564845	2R_14564845_SNP [dm3] 2R_18677340_SNP [dm6]	A	C	3.669e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	20287397	3R_20287397_SNP [dm3] 3R_24461675_SNP [dm6]	G	T	3.676e^-4	0.889	INTERGENIC
3R	11857220	3R_11857220_SNP [dm3] 3R_16031498_SNP [dm6]	C	T	3.678e^-4	0.889	INTRON pnr
2L	8354910	2L_8354910_SNP [dm3] 2L_8354910_SNP [dm6]	A	G	3.684e^-4	0.889	NON_SYNONYMOUS_CODING Mur29B DOWNSTREAM CG7627
3L	11318395	3L_11318395_SNP [dm3] 3L_11325295_SNP [dm6]	T	A	3.691e^-4	0.889	UPSTREAM CR44723 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	24667341	3R_24667341_SNP [dm3] 3R_28841619_SNP [dm6]	G	A	3.701e^-4	0.889	INTRON Apc	TF binding site BDTNP1_TFBS_twi
3R	14287568	3R_14287568_SNP [dm3] 3R_18461846_SNP [dm6]	C	T	3.701e^-4	0.889	INTRON fru
3R	14287573	3R_14287573_SNP [dm3] 3R_18461851_SNP [dm6]	T	C	3.701e^-4	0.889	INTRON fru
3L	12074292	3L_12074292_SNP [dm3] 3L_12081192_SNP [dm6]	G	A	3.702e^-4	0.889	INTRON Sema-5c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	19255246	2R_19255246_SNP [dm3] 2R_23367723_SNP [dm6]	A	C	3.703e^-4	0.889	NON_SYNONYMOUS_CODING Ice1	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	21962090	2L_21962090_SNP [dm3] 2L_21962090_SNP [dm6]	A	G	3.718e^-4	0.889	INTERGENIC
3R	8047370	3R_8047370_SNP [dm3] 3R_12221648_SNP [dm6]	G	A	3.727e^-4	0.889	UPSTREAM CG10014 & 1 other INTERGENIC
2R	13539767	2R_13539767_SNP [dm3] 2R_17652262_SNP [dm6]	C	A	3.727e^-4	0.889	INTRON CCHa1-R
2R	4489785	2R_4489785_SNP [dm3] 2R_8602280_SNP [dm6]	G	C	3.729e^-4	0.889	INTRON rgr
2R	9131416	2R_9131416_SNP [dm3] 2R_13243911_SNP [dm6]	T	A	3.732e^-4	0.889	DOWNSTREAM CR45278 INTERGENIC
3L	3615232	3L_3615232_SNP [dm3] 3L_3615232_SNP [dm6]	C	A	3.736e^-4	0.889	UTR_3_PRIME CG10359 UPSTREAM CG10357	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	21904320	2L_21904320_SNP [dm3] 2L_21904320_SNP [dm6]	C	T	3.740e^-4	0.889	DOWNSTREAM CG1421 INTERGENIC
3R	25167658	3R_25167658_SNP [dm3] 3R_29341936_SNP [dm6]	G	A	3.743e^-4	0.889	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25167660	3R_25167660_SNP [dm3] 3R_29341938_SNP [dm6]	A	T	3.743e^-4	0.889	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25167663	3R_25167663_SNP [dm3] 3R_29341941_SNP [dm6]	A	G	3.743e^-4	0.889	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25167666	3R_25167666_DEL [dm3] 3R_29341944_DEL [dm6]	AGT	A	3.743e^-4	0.889	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19512127	2L_19512127_SNP [dm3] 2L_19512127_SNP [dm6]	A	C	3.744e^-4	0.889	SYNONYMOUS_CODING CG10186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22198495	3R_22198495_SNP [dm3] 3R_26372773_SNP [dm6]	T	A	3.751e^-4	0.889	INTERGENIC
3R	25154376	3R_25154376_SNP [dm3] 3R_29328654_SNP [dm6]	G	C	3.752e^-4	0.889	INTERGENIC
3R	1469145	3R_1469145_DEL [dm3] 3R_5643423_DEL [dm6]	TC	T	3.755e^-4	0.889	INTRON MTA1-like
3L	2622045	3L_2622045_SNP [dm3] 3L_2622045_SNP [dm6]	G	A	3.777e^-4	0.889	INTRON Pxn
2R	12143401	2R_12143401_SNP [dm3] 2R_16255896_SNP [dm6]	C	A	3.783e^-4	0.889	INTRON CngA
3R	3974608	3R_3974608_SNP [dm3] 3R_8148886_SNP [dm6]	C	A	3.784e^-4	0.889	UTR_3_PRIME grn
3R	15657747	3R_15657747_SNP [dm3] 3R_19832025_SNP [dm6]	A	G	3.786e^-4	0.889	INTRON bnl
2L	12078901	2L_12078901_SNP [dm3] 2L_12078901_SNP [dm6]	T	A	3.786e^-4	0.889	UPSTREAM CR44591 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	12140286	2L_12140286_DEL [dm3] 2L_12140286_DEL [dm6]	TG	T	3.793e^-4	0.889	UTR_3_PRIME Gr33a
3L	18531737	3L_18531737_SNP [dm3] 3L_18538637_SNP [dm6]	A	G	3.800e^-4	0.889	INTERGENIC
3R	408626	3R_408626_SNP [dm3] 3R_4582904_SNP [dm6]	C	T	3.804e^-4	0.889	INTERGENIC	transposable element FlyBase
2R	20302118	2R_20302118_SNP [dm3] 2R_24414595_SNP [dm6]	C	T	3.804e^-4	0.889	START_GAINED CG45069 UTR_5_PRIME CG45069 UTR_3_PRIME CG45068 UPSTREAM CG45069 DOWNSTREAM prom
2L	9567382	2L_9567382_SNP [dm3] 2L_9567382_SNP [dm6]	A	C	3.806e^-4	0.889	UPSTREAM jp DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	18560143	3R_18560143_SNP [dm3] 3R_22734421_SNP [dm6]	A	G	3.807e^-4	0.889	SYNONYMOUS_CODING Dcr-1 UPSTREAM Takl2	TF binding site mE1_TFBS_cad
2L	5852353	2L_5852353_SNP [dm3] 2L_5852353_SNP [dm6]	A	G	3.812e^-4	0.889	INTRON TrissinR	TF binding site BDTNP1_TFBS_sna mE1_TFBS_inv
2L	21775574	2L_21775574_INS [dm3] 2L_21775574_INS [dm6]	A	ATC	3.815e^-4	0.889	INTRON CG31612	TF binding site mE1_TFBS_HSA transposable element FlyBase
3R	481738	3R_481738_SNP [dm3] 3R_4656016_SNP [dm6]	G	A	3.815e^-4	0.889	NON_SYNONYMOUS_CODING spartin	TF binding site mE1_TFBS_sens
3R	15657752	3R_15657752_SNP [dm3] 3R_19832030_SNP [dm6]	T	C	3.818e^-4	0.889	INTRON bnl
3L	17181040	3L_17181040_SNP [dm3] 3L_17187940_SNP [dm6]	C	A	3.835e^-4	0.889	INTRON Rbp6
2L	4448327	2L_4448327_SNP [dm3] 2L_4448327_SNP [dm6]	G	A	3.838e^-4	0.889	DOWNSTREAM CG15439 INTRON MFS18	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
X	16133878	X_16133878_SNP [dm3] X_16239845_SNP [dm6]	G	T	3.839e^-4	0.889	INTERGENIC
2L	10226967	2L_10226967_SNP [dm3] 2L_10226967_SNP [dm6]	A	G	3.839e^-4	0.889	UPSTREAM CG5708 DOWNSTREAM CG5694 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	4013806	3L_4013806_DEL [dm3] 3L_4013806_DEL [dm6]	TCACTAACACCCCTTT...	T	3.841e^-4	0.889	INTERGENIC
2L	7842425	2L_7842425_SNP [dm3] 2L_7842425_SNP [dm6]	T	C	3.841e^-4	0.889	INTERGENIC
2R	13400409	2R_13400409_SNP [dm3] 2R_17512904_SNP [dm6]	G	A	3.844e^-4	0.889	SYNONYMOUS_CODING CG4847	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	8566567	X_8566567_SNP [dm3] X_8672534_SNP [dm6]	G	A	3.868e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9961398	3L_9961398_SNP [dm3] 3L_9968298_SNP [dm6]	T	C	3.868e^-4	0.889	UTR_5_PRIME CG6685 UPSTREAM Nc DOWNSTREAM CG34356	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3L	15522268	3L_15522268_SNP [dm3] 3L_15529168_SNP [dm6]	A	G	3.870e^-4	0.889	SYNONYMOUS_CODING obst-H UPSTREAM CG42728 DOWNSTREAM CG43248	TF binding site mE1_TFBS_sens
2R	18058487	2R_18058487_SNP [dm3] 2R_22170982_SNP [dm6]	T	C	3.876e^-4	0.889	SYNONYMOUS_CODING a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9961388	3L_9961388_SNP [dm3] 3L_9968288_SNP [dm6]	C	T	3.893e^-4	0.889	NON_SYNONYMOUS_CODING CG6685 UPSTREAM Nc DOWNSTREAM CG34356	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	12364673	3R_12364673_SNP [dm3] 3R_16538951_SNP [dm6]	C	G	3.893e^-4	0.889	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_h mE1_TFBS_HSA
2R	19274998	2R_19274998_SNP [dm3] 2R_23387475_SNP [dm6]	G	C	3.896e^-4	0.889	NON_SYNONYMOUS_CODING eIF2B-delta	TF binding site mE1_TFBS_sens
2R	10157335	2R_10157335_SNP [dm3] 2R_14269830_SNP [dm6]	A	G	3.899e^-4	0.889	SYNONYMOUS_CODING SelD UPSTREAM conv	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	10157341	2R_10157341_SNP [dm3] 2R_14269836_SNP [dm6]	A	G	3.899e^-4	0.889	SYNONYMOUS_CODING SelD UPSTREAM conv	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	4841144	3L_4841144_SNP [dm3] 3L_4841144_SNP [dm6]	C	T	3.899e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	9109653	2L_9109653_SNP [dm3] 2L_9109653_SNP [dm6]	G	A	3.908e^-4	0.889	INTERGENIC
3L	9317825	3L_9317825_SNP [dm3] 3L_9324725_SNP [dm6]	T	C	3.917e^-4	0.889	INTERGENIC
2L	8324508	2L_8324508_SNP [dm3] 2L_8324508_SNP [dm6]	A	G	3.924e^-4	0.889	INTRON CG7781
3L	10340504	3L_10340504_INS [dm3] 3L_10347404_INS [dm6]	G	GTATA	3.927e^-4	0.889	UPSTREAM CR44327 INTERGENIC
3L	4841147	3L_4841147_SNP [dm3] 3L_4841147_SNP [dm6]	C	A	3.933e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	16290353	3R_16290353_SNP [dm3] 3R_20464631_SNP [dm6]	C	G	3.937e^-4	0.889	INTRON Gfrl	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	8782999	2L_8782999_SNP [dm3] 2L_8782999_SNP [dm6]	T	C	3.939e^-4	0.889	UPSTREAM CG42710 INTERGENIC
3L	18191039	3L_18191039_SNP [dm3] 3L_18197939_SNP [dm6]	G	T	3.941e^-4	0.889	INTERGENIC
3L	10508664	3L_10508664_SNP [dm3] 3L_10515564_SNP [dm6]	A	T	3.952e^-4	0.889	UPSTREAM A2bp1 INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4702139	3R_4702139_SNP [dm3] 3R_8876417_SNP [dm6]	G	A	3.955e^-4	0.889	INTRON pyd
2R	9104401	2R_9104401_SNP [dm3] 2R_13216896_SNP [dm6]	T	G	3.956e^-4	0.889	SYNONYMOUS_CODING CG4630	TF binding site mE1_TFBS_cad
3L	6840149	3L_6840149_SNP [dm3] 3L_6847049_SNP [dm6]	A	T	3.958e^-4	0.889	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3L	296667	3L_296667_SNP [dm3] 3L_296667_SNP [dm6]	G	A	3.959e^-4	0.889	INTRON RhoGEF3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	13465271	3R_13465271_SNP [dm3] 3R_17639549_SNP [dm6]	C	A	3.962e^-4	0.889	INTRON CG43175 & 1 other
3L	18157562	3L_18157562_INS [dm3] 3L_18164462_INS [dm6]	A	AA	3.973e^-4	0.889	INTERGENIC
3R	27016444	3R_27016444_SNP [dm3] 3R_31190722_SNP [dm6]	A	G	3.985e^-4	0.889	INTRON mesh
3R	25086053	3R_25086053_SNP [dm3] 3R_29260331_SNP [dm6]	G	T	3.995e^-4	0.889	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	9756990	X_9756990_SNP [dm3] X_9862957_SNP [dm6]	A	G	3.999e^-4	0.889	INTERGENIC
X	17945999	X_17945999_SNP [dm3] X_18051966_SNP [dm6]	T	C	4.004e^-4	0.889	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18191040	3L_18191040_SNP [dm3] 3L_18197940_SNP [dm6]	C	A	4.006e^-4	0.889	INTERGENIC
3L	18191050	3L_18191050_SNP [dm3] 3L_18197950_SNP [dm6]	T	C	4.006e^-4	0.889	INTERGENIC
3L	18191052	3L_18191052_SNP [dm3] 3L_18197952_SNP [dm6]	C	A	4.006e^-4	0.889	INTERGENIC
3L	12647797	3L_12647797_SNP [dm3] 3L_12654697_SNP [dm6]	C	A	4.010e^-4	0.889	INTERGENIC
X	9756983	X_9756983_SNP [dm3] X_9862950_SNP [dm6]	A	G	4.016e^-4	0.889	INTERGENIC
2L	22020649	2L_22020649_SNP [dm3] 2L_22020649_SNP [dm6]	T	G	4.016e^-4	0.889	DOWNSTREAM CR33987 INTRON tio	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10699839	3L_10699839_SNP [dm3] 3L_10706739_SNP [dm6]	T	G	4.025e^-4	0.889	INTERGENIC
3L	539977	3L_539977_SNP [dm3] 3L_539977_SNP [dm6]	C	G	4.038e^-4	0.889	UTR_5_PRIME klar UPSTREAM CG17180	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	16493446	2L_16493446_SNP [dm3] 2L_16493446_SNP [dm6]	C	T	4.042e^-4	0.889	INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	10866468	2L_10866468_SNP [dm3] 2L_10866468_SNP [dm6]	C	A	4.057e^-4	0.889	INTERGENIC
2L	9568691	2L_9568691_SNP [dm3] 2L_9568691_SNP [dm6]	C	T	4.071e^-4	0.889	UPSTREAM CG3838 EXON CR44149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	26864084	3R_26864084_SNP [dm3] 3R_31038362_SNP [dm6]	T	C	4.078e^-4	0.889	INTERGENIC
3L	7257654	3L_7257654_SNP [dm3] 3L_7264554_SNP [dm6]	G	T	4.080e^-4	0.889	UPSTREAM CG14830 INTERGENIC
3R	13600041	3R_13600041_SNP [dm3] 3R_17774319_SNP [dm6]	C	T	4.085e^-4	0.889	UTR_5_PRIME CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo
2L	13698087	2L_13698087_SNP [dm3] 2L_13698087_SNP [dm6]	C	T	4.086e^-4	0.889	INTRON CG31814
2L	19563658	2L_19563658_DEL [dm3] 2L_19563658_DEL [dm6]	GT	G	4.087e^-4	0.889	UPSTREAM CG13078 DOWNSTREAM Tep5 INTERGENIC	TF binding site mE1_TFBS_cnc
3R	5128176	3R_5128176_SNP [dm3] 3R_9302454_SNP [dm6]	G	T	4.088e^-4	0.889	INTRON CG8861
2L	10553115	2L_10553115_SNP [dm3] 2L_10553115_SNP [dm6]	A	T	4.104e^-4	0.889	INTRON Trim9	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	10699827	3L_10699827_DEL [dm3] 3L_10706727_DEL [dm6]	ATCCA	A	4.106e^-4	0.889	INTERGENIC
X	5228646	X_5228646_SNP [dm3] X_5334613_SNP [dm6]	G	A	4.112e^-4	0.889	DOWNSTREAM CanB INTERGENIC
2L	1330028	2L_1330028_INS [dm3] 2L_1330028_INS [dm6]	C	CTTCT	4.117e^-4	0.889	DOWNSTREAM a5 INTERGENIC
2L	17997092	2L_17997092_SNP [dm3] 2L_17997092_SNP [dm6]	T	C	4.122e^-4	0.889	INTERGENIC
2R	16361074	2R_16361074_SNP [dm3] 2R_20473569_SNP [dm6]	C	T	4.124e^-4	0.889	INTRON CG12484
2R	16361091	2R_16361091_SNP [dm3] 2R_20473586_SNP [dm6]	A	C	4.124e^-4	0.889	INTRON CG12484
3R	10639775	3R_10639775_SNP [dm3] 3R_14814053_SNP [dm6]	A	C	4.124e^-4	0.889	INTRON btsz	TF binding site mE1_TFBS_cad
2R	4176364	2R_4176364_SNP [dm3] 2R_8288859_SNP [dm6]	T	C	4.128e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	2291041	3L_2291041_SNP [dm3] 3L_2291041_SNP [dm6]	C	G	4.130e^-4	0.889	INTRON MsR2
3L	10699760	3L_10699760_SNP [dm3] 3L_10706660_SNP [dm6]	G	T	4.131e^-4	0.889	INTERGENIC
2R	19253742	2R_19253742_SNP [dm3] 2R_23366219_SNP [dm6]	G	A	4.132e^-4	0.889	SYNONYMOUS_CODING vir UPSTREAM Ice1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19254565	2R_19254565_SNP [dm3] 2R_23367042_SNP [dm6]	G	A	4.132e^-4	0.889	UTR_5_PRIME Ice1 UPSTREAM vir	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	16239654	2L_16239654_SNP [dm3] 2L_16239654_SNP [dm6]	T	C	4.134e^-4	0.889	INTRON CG42817
3L	13549586	3L_13549586_SNP [dm3] 3L_13556486_SNP [dm6]	C	A	4.143e^-4	0.889	INTRON bru-3
2R	12544954	2R_12544954_SNP [dm3] 2R_16657449_SNP [dm6]	G	C	4.149e^-4	0.889	INTRON Picot
3R	25063465	3R_25063465_SNP [dm3] 3R_29237743_SNP [dm6]	G	T	4.149e^-4	0.889	NON_SYNONYMOUS_CODING CG11951	TF binding site mE1_TFBS_cad
3L	11461222	3L_11461222_SNP [dm3] 3L_11468122_SNP [dm6]	G	C	4.152e^-4	0.889	INTERGENIC
3L	1316995	3L_1316995_SNP [dm3] 3L_1316995_SNP [dm6]	T	C	4.153e^-4	0.889	SYNONYMOUS_CODING CG9153
2L	9816540	2L_9816540_SNP [dm3] 2L_9816540_SNP [dm6]	A	T	4.154e^-4	0.889	INTRON nAChRalpha6
3L	9725234	3L_9725234_SNP [dm3] 3L_9732134_SNP [dm6]	A	G	4.157e^-4	0.889	SYNONYMOUS_CODING CG6749 DOWNSTREAM ATPsyn-b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17947646	X_17947646_INS [dm3] X_18053613_INS [dm6]	G	GTGTGTATG	4.170e^-4	0.889	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8425045	2L_8425045_SNP [dm3] 2L_8425045_SNP [dm6]	T	C	4.176e^-4	0.889	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	10543723	X_10543723_SNP [dm3] X_10649690_SNP [dm6]	G	C	4.177e^-4	0.889	INTRON X11Lbeta
3R	11857631	3R_11857631_SNP [dm3] 3R_16031909_SNP [dm6]	A	C	4.178e^-4	0.889	INTRON pnr
2L	9282473	2L_9282473_SNP [dm3] 2L_9282473_SNP [dm6]	T	G	4.180e^-4	0.889	INTRON Ggamma30A
3R	15706628	3R_15706628_SNP [dm3] 3R_19880906_SNP [dm6]	T	C	4.181e^-4	0.889	SYNONYMOUS_CODING Pk92B UTR_5_PRIME Pk92B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9515430	3L_9515430_SNP [dm3] 3L_9522330_SNP [dm6]	A	G	4.214e^-4	0.893	INTRON CG33700
2L	3820987	2L_3820987_SNP [dm3] 2L_3820987_SNP [dm6]	C	T	4.216e^-4	0.893	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2475070	3L_2475070_SNP [dm3] 3L_2475070_SNP [dm6]	C	G	4.217e^-4	0.893	SYNONYMOUS_CODING CG16762 INTRON CG45186
2R	19254635	2R_19254635_SNP [dm3] 2R_23367112_SNP [dm6]	G	T	4.224e^-4	0.893	NON_SYNONYMOUS_CODING Ice1 UPSTREAM vir	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	22201974	3R_22201974_SNP [dm3] 3R_26376252_SNP [dm6]	T	C	4.226e^-4	0.893	INTERGENIC
3R	22221158	3R_22221158_SNP [dm3] 3R_26395436_SNP [dm6]	A	T	4.235e^-4	0.893	INTERGENIC
3R	11857221	3R_11857221_SNP [dm3] 3R_16031499_SNP [dm6]	G	T	4.235e^-4	0.893	INTRON pnr
2L	14900856	2L_14900856_SNP [dm3] 2L_14900856_SNP [dm6]	A	C	4.251e^-4	0.894	INTERGENIC
3L	1646170	3L_1646170_SNP [dm3] 3L_1646170_SNP [dm6]	G	A	4.262e^-4	0.894	SYNONYMOUS_CODING CG17249 UPSTREAM alphaCOP DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17723624	2R_17723624_SNP [dm3] 2R_21836119_SNP [dm6]	G	A	4.263e^-4	0.894	SYNONYMOUS_CODING CG4377
2R	17781520	2R_17781520_SNP [dm3] 2R_21894015_SNP [dm6]	G	T	4.268e^-4	0.894	INTRON Fili
X	7613026	X_7613026_DEL [dm3] X_7718993_DEL [dm6]	TATGATGAAGGTAT...	T	4.269e^-4	0.894	INTERGENIC
X	17938618	X_17938618_SNP [dm3] X_18044585_SNP [dm6]	G	C	4.271e^-4	0.894	SYNONYMOUS_CODING CG15373 INTRON Sh
3L	18191031	3L_18191031_INS [dm3] 3L_18197931_INS [dm6]	A	AAG	4.286e^-4	0.894	DOWNSTREAM CR45234 INTERGENIC
3L	18191033	3L_18191033_MNP [dm3] 3L_18197933_MNP [dm6]	TAC	ATG	4.286e^-4	0.894	INTERGENIC
3L	18191043	3L_18191043_MNP [dm3] 3L_18197943_MNP [dm6]	AAC	TCT	4.286e^-4	0.894	INTERGENIC
3L	3289962	3L_3289962_SNP [dm3] 3L_3289962_SNP [dm6]	C	A	4.286e^-4	0.894	UTR_3_PRIME CG12017 INTRON CG12017
2R	254918	2R_254918_SNP [dm3] 2R_4367413_SNP [dm6]	C	T	4.304e^-4	0.895	INTRON Gprk1
2R	17789814	2R_17789814_SNP [dm3] 2R_21902309_SNP [dm6]	A	C	4.309e^-4	0.895	INTRON Fili
X	7725085	X_7725085_SNP [dm3] X_7831052_SNP [dm6]	C	G	4.310e^-4	0.895	INTRON CG1402
3L	10861565	3L_10861565_SNP [dm3] 3L_10868465_SNP [dm6]	A	G	4.313e^-4	0.895	INTRON tna
2R	3078696	2R_3078696_SNP [dm3] 2R_7191191_SNP [dm6]	C	T	4.313e^-4	0.895	INTRON pk	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3L	4118164	3L_4118164_SNP [dm3] 3L_4118164_SNP [dm6]	C	T	4.319e^-4	0.895	INTRON Chd64
2R	16956424	2R_16956424_SNP [dm3] 2R_21068919_SNP [dm6]	T	C	4.325e^-4	0.895	SYNONYMOUS_CODING Cht9 EXON CR44703	TF binding site mE1_TFBS_cad
2R	14185169	2R_14185169_SNP [dm3] 2R_18297664_SNP [dm6]	T	C	4.351e^-4	0.895	SYNONYMOUS_CODING CG18538 UPSTREAM CG18539 INTRON sbb
3L	14350889	3L_14350889_SNP [dm3] 3L_14357789_SNP [dm6]	T	G	4.356e^-4	0.895	INTRON fz
3R	3271090	3R_3271090_SNP [dm3] 3R_7445368_SNP [dm6]	G	A	4.362e^-4	0.895	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10405199	2L_10405199_DEL [dm3] 2L_10405199_DEL [dm6]	TGAGTTATTTTGATAT...	T	4.365e^-4	0.895	UTR_5_PRIME CG17768 & 1 other UPSTREAM Ir31a & 2 others INTRAGENIC CG17768 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25167560	3R_25167560_SNP [dm3] 3R_29341838_SNP [dm6]	A	C	4.365e^-4	0.895	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14035014	X_14035014_DEL [dm3] X_14140981_DEL [dm6]	GG	G	4.369e^-4	0.895	UPSTREAM CR44658 INTERGENIC
2R	9112707	2R_9112707_SNP [dm3] 2R_13225202_SNP [dm6]	G	A	4.381e^-4	0.895	UPSTREAM Dp & 1 other INTRON Dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	19887742	2R_19887742_SNP [dm3] 2R_24000219_SNP [dm6]	A	G	4.403e^-4	0.895	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12545177	2R_12545177_SNP [dm3] 2R_16657672_SNP [dm6]	C	T	4.413e^-4	0.895	INTRON Picot
3L	8753283	3L_8753283_SNP [dm3] 3L_8760183_SNP [dm6]	C	T	4.416e^-4	0.895	SYNONYMOUS_CODING Fhos
2R	8137681	2R_8137681_SNP [dm3] 2R_12250176_SNP [dm6]	A	C	4.416e^-4	0.895	INTERGENIC
X	19871079	X_19871079_SNP [dm3] X_19977046_SNP [dm6]	A	G	4.417e^-4	0.895	INTERGENIC
3L	6239379	3L_6239379_SNP [dm3] 3L_6246279_SNP [dm6]	A	C	4.429e^-4	0.895	UTR_3_PRIME Best2 UPSTREAM Mdr65
2R	15039626	2R_15039626_SNP [dm3] 2R_19152121_SNP [dm6]	C	A	4.435e^-4	0.895	INTRON ena
2L	2276414	2L_2276414_SNP [dm3] 2L_2276414_SNP [dm6]	G	A	4.438e^-4	0.895	INTRON CR43753
3R	1588313	3R_1588313_SNP [dm3] 3R_5762591_SNP [dm6]	G	T	4.446e^-4	0.895	SYNONYMOUS_CODING CG2082 UTR_5_PRIME CG2082
2R	19255295	2R_19255295_SNP [dm3] 2R_23367772_SNP [dm6]	A	G	4.448e^-4	0.895	SYNONYMOUS_CODING Ice1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	20268991	X_20268991_SNP [dm3] X_20397964_SNP [dm6]	G	T	4.455e^-4	0.895	INTRON HERC2	transposable element FlyBase
2R	16866165	2R_16866165_SNP [dm3] 2R_20978660_SNP [dm6]	G	C	4.467e^-4	0.895	UTR_5_PRIME CG15650 UPSTREAM CG9313 & 1 other
3R	18899380	3R_18899380_SNP [dm3] 3R_23073658_SNP [dm6]	A	T	4.468e^-4	0.895	INTRON CG13830
2L	5337807	2L_5337807_SNP [dm3] 2L_5337807_SNP [dm6]	A	G	4.478e^-4	0.895	UTR_5_PRIME fusl INTRON fusl
X	21116656	X_21116656_SNP [dm3] X_21245629_SNP [dm6]	G	A	4.483e^-4	0.895	INTRON CG32521
X	6841197	X_6841197_SNP [dm3] X_6947164_SNP [dm6]	T	A	4.493e^-4	0.895	INTRON CG14431
3R	5654826	3R_5654826_SNP [dm3] 3R_9829104_SNP [dm6]	A	T	4.499e^-4	0.895	INTRON Teh1
X	757741	X_757741_INS [dm3] X_863708_INS [dm6]	A	ATTCGGGCGGGA...	4.500e^-4	0.895	DOWNSTREAM CG14634 INTRON CG43867
X	20268993	X_20268993_DEL [dm3] X_20397966_DEL [dm6]	TCTGTATGTCGGGCACGCGA...	A	4.505e^-4	0.895	INTRON HERC2	transposable element FlyBase
2R	5112660	2R_5112660_SNP [dm3] 2R_9225155_SNP [dm6]	T	C	4.506e^-4	0.895	INTERGENIC
2L	15033856	2L_15033856_SNP [dm3] 2L_15033856_SNP [dm6]	T	C	4.509e^-4	0.895	UTR_3_PRIME GABA-B-R1
3L	9515078	3L_9515078_SNP [dm3] 3L_9521978_SNP [dm6]	G	T	4.519e^-4	0.895	INTRON CG33700
2R	6929352	2R_6929352_SNP [dm3] 2R_11041847_SNP [dm6]	A	T	4.521e^-4	0.895	INTRON luna	TF binding site mE1_TFBS_cad
2L	9947253	2L_9947253_SNP [dm3] 2L_9947253_SNP [dm6]	G	C	4.522e^-4	0.895	INTRON CG5853
3L	15402382	3L_15402382_SNP [dm3] 3L_15409282_SNP [dm6]	G	A	4.523e^-4	0.895	INTERGENIC
X	17096042	X_17096042_SNP [dm3] X_17202009_SNP [dm6]	C	T	4.523e^-4	0.895	SYNONYMOUS_CODING CG8918	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19862656	2R_19862656_SNP [dm3] 2R_23975133_SNP [dm6]	G	T	4.537e^-4	0.895	DOWNSTREAM Gadd34 INTRON mr
2L	12110914	2L_12110914_SNP [dm3] 2L_12110914_SNP [dm6]	T	C	4.545e^-4	0.895	UPSTREAM Phae2 DOWNSTREAM Phae1 INTERGENIC
3R	1543850	3R_1543850_SNP [dm3] 3R_5718128_SNP [dm6]	C	T	4.554e^-4	0.895	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
2L	12140299	2L_12140299_SNP [dm3] 2L_12140299_SNP [dm6]	T	A	4.559e^-4	0.895	UTR_3_PRIME Gr33a
3L	9936718	3L_9936718_SNP [dm3] 3L_9943618_SNP [dm6]	T	A	4.563e^-4	0.895	INTRON CG34356
X	18396450	X_18396450_SNP [dm3] X_18502417_SNP [dm6]	G	A	4.567e^-4	0.895	SYNONYMOUS_CODING Wnt5	TF binding site mE1_TFBS_cad
X	17076851	X_17076851_DEL [dm3] X_17182818_DEL [dm6]	TACTCAGATAAGT...	T	4.570e^-4	0.895	DOWNSTREAM CR44026 INTRON baz
3L	4678324	3L_4678324_SNP [dm3] 3L_4678324_SNP [dm6]	G	T	4.577e^-4	0.895	DOWNSTREAM CG34266 INTRON axo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17455708	3R_17455708_SNP [dm3] 3R_21629986_SNP [dm6]	G	T	4.577e^-4	0.895	INTRON E2f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	18312526	3L_18312526_SNP [dm3] 3L_18319426_SNP [dm6]	C	A	4.583e^-4	0.895	INTERGENIC
2R	19868983	2R_19868983_SNP [dm3] 2R_23981460_SNP [dm6]	A	G	4.598e^-4	0.895	INTRON Sox14	TF binding site BDTNP1_TFBS_dl
3R	4363255	3R_4363255_SNP [dm3] 3R_8537533_SNP [dm6]	A	G	4.598e^-4	0.895	INTERGENIC
2L	6759801	2L_6759801_SNP [dm3] 2L_6759801_SNP [dm6]	A	T	4.609e^-4	0.895	UPSTREAM CG11322 DOWNSTREAM CG11321 INTERGENIC
2R	11724886	2R_11724886_SNP [dm3] 2R_15837381_SNP [dm6]	A	G	4.613e^-4	0.895	INTRON tun	regulatory region REDfly_CRMs
X	16615961	X_16615961_SNP [dm3] X_16721928_SNP [dm6]	A	G	4.616e^-4	0.895	UPSTREAM CG34325 INTRON CG32572
3R	12162462	3R_12162462_SNP [dm3] 3R_16336740_SNP [dm6]	C	A	4.622e^-4	0.895	INTRON Sulf1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	4680408	3L_4680408_SNP [dm3] 3L_4680408_SNP [dm6]	T	C	4.636e^-4	0.895	INTRON axo	TF binding site BDTNP1_TFBS_dl
2L	21787136	2L_21787136_SNP [dm3] 2L_21787136_SNP [dm6]	T	C	4.642e^-4	0.895	INTRON CG31612	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9765813	2R_9765813_SNP [dm3] 2R_13878308_SNP [dm6]	T	C	4.649e^-4	0.895	SYNONYMOUS_CODING shot
3R	14323891	3R_14323891_SNP [dm3] 3R_18498169_SNP [dm6]	C	T	4.657e^-4	0.895	INTRON fru
X	12246847	X_12246847_SNP [dm3] X_12352814_SNP [dm6]	C	T	4.659e^-4	0.895	INTERGENIC
3R	25529961	3R_25529961_SNP [dm3] 3R_29704239_SNP [dm6]	T	C	4.663e^-4	0.895	INTERGENIC
2R	11322522	2R_11322522_SNP [dm3] 2R_15435017_SNP [dm6]	C	A	4.666e^-4	0.895	INTRON CG43729	TF binding site mE1_TFBS_chinmo
3L	10383595	3L_10383595_SNP [dm3] 3L_10390495_SNP [dm6]	T	C	4.671e^-4	0.895	INTERGENIC
3L	9936726	3L_9936726_SNP [dm3] 3L_9943626_SNP [dm6]	A	C	4.674e^-4	0.895	INTRON CG34356
X	13991105	X_13991105_SNP [dm3] X_14097072_SNP [dm6]	A	T	4.675e^-4	0.895	INTERGENIC
3L	3282444	3L_3282444_SNP [dm3] 3L_3282444_SNP [dm6]	C	T	4.681e^-4	0.895	INTRON CG12017
2R	6734385	2R_6734385_SNP [dm3] 2R_10846880_SNP [dm6]	A	T	4.693e^-4	0.895	INTRON CG30015
X	4073210	X_4073210_INS [dm3] X_4179177_INS [dm6]	A	AA	4.694e^-4	0.895	INTRON Fas2
2L	21024570	2L_21024570_SNP [dm3] 2L_21024570_SNP [dm6]	T	C	4.701e^-4	0.895	INTRON CG42238	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	796590	3L_796590_SNP [dm3] 3L_796590_SNP [dm6]	A	G	4.703e^-4	0.895	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	4448326	2L_4448326_SNP [dm3] 2L_4448326_SNP [dm6]	G	A	4.708e^-4	0.895	DOWNSTREAM CG15439 INTRON MFS18	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	10478310	3L_10478310_SNP [dm3] 3L_10485210_SNP [dm6]	T	A	4.708e^-4	0.895	INTRON A2bp1
2L	10866632	2L_10866632_SNP [dm3] 2L_10866632_SNP [dm6]	C	A	4.710e^-4	0.895	INTERGENIC
3R	25167563	3R_25167563_SNP [dm3] 3R_29341841_SNP [dm6]	A	T	4.713e^-4	0.895	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13768609	2L_13768609_SNP [dm3] 2L_13768609_SNP [dm6]	T	A	4.714e^-4	0.895	INTRON TM9SF4
3L	14179964	3L_14179964_SNP [dm3] 3L_14186864_SNP [dm6]	A	G	4.722e^-4	0.895	SYNONYMOUS_CODING nan	TF binding site mE1_TFBS_cad
3L	15168022	3L_15168022_SNP [dm3] 3L_15174922_SNP [dm6]	T	C	4.725e^-4	0.895	INTERGENIC
3L	2611016	3L_2611016_SNP [dm3] 3L_2611016_SNP [dm6]	C	T	4.726e^-4	0.895	NON_SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10699614	3L_10699614_SNP [dm3] 3L_10706514_SNP [dm6]	A	T	4.738e^-4	0.895	INTERGENIC
3L	9247114	3L_9247114_SNP [dm3] 3L_9254014_SNP [dm6]	T	C	4.742e^-4	0.895	INTRON GluRIB
2L	13926005	2L_13926005_SNP [dm3] 2L_13926005_SNP [dm6]	T	C	4.748e^-4	0.895	INTRON Ance-3
X	18849579	X_18849579_SNP [dm3] X_18955546_SNP [dm6]	A	G	4.750e^-4	0.895	INTRON CG43759
X	14073579	X_14073579_SNP [dm3] X_14179546_SNP [dm6]	A	C	4.757e^-4	0.895	INTERGENIC
3L	10477912	3L_10477912_SNP [dm3] 3L_10484812_SNP [dm6]	C	G	4.764e^-4	0.895	INTRON A2bp1
2L	6793465	2L_6793465_SNP [dm3] 2L_6793465_SNP [dm6]	T	A	4.765e^-4	0.895	INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	2475152	3L_2475152_SNP [dm3] 3L_2475152_SNP [dm6]	T	A	4.768e^-4	0.895	INTRON CG45186 & 1 other
3R	21977520	3R_21977520_SNP [dm3] 3R_26151798_SNP [dm6]	C	A	4.769e^-4	0.895	INTERGENIC
3L	8857647	3L_8857647_SNP [dm3] 3L_8864547_SNP [dm6]	A	G	4.789e^-4	0.895	INTRON dally
3R	13166492	3R_13166492_SNP [dm3] 3R_17340770_SNP [dm6]	C	A	4.790e^-4	0.895	INTRON beat-IIa
3L	9808714	3L_9808714_SNP [dm3] 3L_9815614_SNP [dm6]	A	T	4.798e^-4	0.895	UPSTREAM CG43897 INTRON CG43897
3R	8199789	3R_8199789_SNP [dm3] 3R_12374067_SNP [dm6]	C	A	4.803e^-4	0.895	UPSTREAM GstD4 DOWNSTREAM GstD3 INTERGENIC
3R	9409835	3R_9409835_SNP [dm3] 3R_13584113_SNP [dm6]	T	A	4.807e^-4	0.895	INTERGENIC
3L	13552016	3L_13552016_SNP [dm3] 3L_13558916_SNP [dm6]	C	A	4.812e^-4	0.895	DOWNSTREAM CR45178 INTRON bru-3
3R	5147293	3R_5147293_SNP [dm3] 3R_9321571_SNP [dm6]	G	C	4.824e^-4	0.895	UPSTREAM HP1e INTRON CG8861	TF binding site mE1_TFBS_HSA
2R	15046200	2R_15046200_SNP [dm3] 2R_19158695_SNP [dm6]	C	G	4.825e^-4	0.895	INTRON ena	TF binding site mE1_TFBS_inv
2L	9561777	2L_9561777_SNP [dm3] 2L_9561777_SNP [dm6]	G	A	4.835e^-4	0.895	INTRON jp
2R	19861854	2R_19861854_SNP [dm3] 2R_23974331_SNP [dm6]	T	C	4.836e^-4	0.895	SYNONYMOUS_CODING mr	TF binding site mE1_TFBS_sens
2L	21886387	2L_21886387_SNP [dm3] 2L_21886387_SNP [dm6]	C	G	4.838e^-4	0.895	INTERGENIC
2L	15766383	2L_15766383_SNP [dm3] 2L_15766383_SNP [dm6]	T	C	4.838e^-4	0.895	UTR_3_PRIME wek DOWNSTREAM wek & 1 other	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA
X	7611716	X_7611716_SNP [dm3] X_7717683_SNP [dm6]	C	T	4.839e^-4	0.895	INTRON CG15478

By genomic position
Variant impact
Gene name

Shoulder_Width phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results