DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.327e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.023312
In_3R_Mo	0.008578

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	6.1506	0.0462
In_3R_Mo	12.2453	0.0022

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2647 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	3271914	3R_3271914_SNP [dm3] 3R_7446192_SNP [dm6]	G	T	2.550e^-7	0.311	INTERGENIC
3R	12082718	3R_12082718_SNP [dm3] 3R_16256996_SNP [dm6]	C	T	7.706e^-7	0.311	SYNONYMOUS_CODING tara	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8006802	2L_8006802_SNP [dm3] 2L_8006802_SNP [dm6]	T	C	7.977e^-7	0.311	NON_SYNONYMOUS_CODING Spn28Dc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11147724	3L_11147724_SNP [dm3] 3L_11154624_SNP [dm6]	G	A	9.021e^-7	0.311	INTRON CG32082
2L	13425465	2L_13425465_SNP [dm3] 2L_13425465_SNP [dm6]	G	A	9.251e^-7	0.311	INTRON CG42784
2L	6514429	2L_6514429_SNP [dm3] 2L_6514429_SNP [dm6]	G	C	9.964e^-7	0.311	INTRON CG31637
3R	3269072	3R_3269072_DEL [dm3] 3R_7443350_DEL [dm6]	TATCAT	T	1.502e^-6	0.402	INTERGENIC
X	8722561	X_8722561_SNP [dm3] X_8828528_SNP [dm6]	T	C	2.003e^-6	0.458	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8722551	X_8722551_SNP [dm3] X_8828518_SNP [dm6]	C	T	2.201e^-6	0.458	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15544913	3R_15544913_SNP [dm3] 3R_19719191_SNP [dm6]	G	T	2.655e^-6	0.486	INTERGENIC
3R	19479652	3R_19479652_SNP [dm3] 3R_23653930_SNP [dm6]	A	G	2.850e^-6	0.486	INTRON CG31145
X	901392	X_901392_SNP [dm3] X_1007359_SNP [dm6]	A	C	4.162e^-6	0.542	INTERGENIC
3L	20850935	3L_20850935_SNP [dm3] 3L_20857835_SNP [dm6]	T	A	4.320e^-6	0.542	INTRON CG32432
3L	1319951	3L_1319951_SNP [dm3] 3L_1319951_SNP [dm6]	G	A	4.438e^-6	0.542	INTRON Myo61F
2L	8436244	2L_8436244_SNP [dm3] 2L_8436244_SNP [dm6]	G	T	4.675e^-6	0.542	INTRON D12	TF binding site mE1_TFBS_sens
3R	20565182	3R_20565182_SNP [dm3] 3R_24739460_SNP [dm6]	T	G	6.093e^-6	0.542	INTRON tok
3L	3156949	3L_3156949_SNP [dm3] 3L_3156949_SNP [dm6]	G	A	6.898e^-6	0.542	SYNONYMOUS_CODING BtbVII	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3253352	3R_3253352_SNP [dm3] 3R_7427630_SNP [dm6]	A	T	7.563e^-6	0.542	INTERGENIC
3R	25766918	3R_25766918_SNP [dm3] 3R_29941196_SNP [dm6]	C	T	7.659e^-6	0.542	NON_SYNONYMOUS_CODING CG15523
X	6748019	X_6748019_SNP [dm3] X_6853986_SNP [dm6]	A	T	7.930e^-6	0.542	INTRON CG14434	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2R	20514579	2R_20514579_SNP [dm3] 2R_24627056_SNP [dm6]	C	T	8.465e^-6	0.542	INTRON CG13594	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	19822999	2R_19822999_SNP [dm3] 2R_23935476_SNP [dm6]	G	T	8.850e^-6	0.542	INTRON Ca-P60A
3L	8915111	3L_8915111_SNP [dm3] 3L_8922011_SNP [dm6]	T	A	8.978e^-6	0.542	INTRON Tsp66E
2L	12548493	2L_12548493_SNP [dm3] 2L_12548493_SNP [dm6]	T	A	9.409e^-6	0.542	INTERGENIC
2L	12294024	2L_12294024_SNP [dm3] 2L_12294024_SNP [dm6]	C	G	9.993e^-6	0.542	INTRON aret
3R	3271090	3R_3271090_SNP [dm3] 3R_7445368_SNP [dm6]	G	A	9.999e^-6	0.542	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8857647	3L_8857647_SNP [dm3] 3L_8864547_SNP [dm6]	A	G	1.001e^-5	0.542	INTRON dally
2L	21901011	2L_21901011_SNP [dm3] 2L_21901011_SNP [dm6]	A	T	1.083e^-5	0.542	INTERGENIC
2R	10587496	2R_10587496_SNP [dm3] 2R_14699991_SNP [dm6]	T	C	1.098e^-5	0.542	INTRON mspo
2L	12805398	2L_12805398_SNP [dm3] 2L_12805398_SNP [dm6]	G	C	1.109e^-5	0.542	INTERGENIC
3L	16726691	3L_16726691_DEL [dm3] 3L_16733591_DEL [dm6]	CAAC	C	1.125e^-5	0.542	UTR_5_PRIME CG9701
3L	8915106	3L_8915106_SNP [dm3] 3L_8922006_SNP [dm6]	A	G	1.149e^-5	0.542	INTRON Tsp66E
3R	19570657	3R_19570657_SNP [dm3] 3R_23744935_SNP [dm6]	A	G	1.188e^-5	0.542	INTRON Hmgcr
3L	17955117	3L_17955117_SNP [dm3] 3L_17962017_SNP [dm6]	T	C	1.200e^-5	0.542	UPSTREAM Eip75B INTRON Eip75B
3L	1086478	3L_1086478_SNP [dm3] 3L_1086478_SNP [dm6]	C	T	1.205e^-5	0.542	INTRON bab1
3L	17955222	3L_17955222_SNP [dm3] 3L_17962122_SNP [dm6]	T	A	1.212e^-5	0.542	UPSTREAM Eip75B INTRON Eip75B
X	12021418	X_12021418_INS [dm3] X_12127385_INS [dm6]	A	AAA	1.259e^-5	0.542	UPSTREAM Ten-a INTRON Ten-a
3R	3148369	3R_3148369_SNP [dm3] 3R_7322647_SNP [dm6]	C	T	1.264e^-5	0.542	INTERGENIC
3L	16741466	3L_16741466_SNP [dm3] 3L_16748366_SNP [dm6]	G	C	1.276e^-5	0.542	INTERGENIC
2R	19884798	2R_19884798_SNP [dm3] 2R_23997275_SNP [dm6]	A	G	1.301e^-5	0.542	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16406658	2R_16406658_SNP [dm3] 2R_20519153_SNP [dm6]	T	G	1.375e^-5	0.542	INTERGENIC
3L	2428522	3L_2428522_SNP [dm3] 3L_2428522_SNP [dm6]	A	G	1.388e^-5	0.542	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	5366994	X_5366994_SNP [dm3] X_5472961_SNP [dm6]	G	A	1.427e^-5	0.542	INTRON SPR
3L	8736354	3L_8736354_DEL [dm3] 3L_8743254_DEL [dm6]	AA	A	1.458e^-5	0.542	INTRON Prm	TF binding site BDTNP1_TFBS_twi
2L	8006797	2L_8006797_SNP [dm3] 2L_8006797_SNP [dm6]	C	T	1.501e^-5	0.542	SYNONYMOUS_CODING Spn28Dc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17078271	X_17078271_SNP [dm3] X_17184238_SNP [dm6]	T	C	1.561e^-5	0.542	UPSTREAM CR44026 INTRON baz
3L	20855390	3L_20855390_SNP [dm3] 3L_20862290_SNP [dm6]	G	C	1.588e^-5	0.542	INTRON CG32432
2L	12806812	2L_12806812_SNP [dm3] 2L_12806812_SNP [dm6]	A	G	1.624e^-5	0.542	DOWNSTREAM CR43818 INTERGENIC
3L	10861558	3L_10861558_SNP [dm3] 3L_10868458_SNP [dm6]	G	A	1.669e^-5	0.542	INTRON tna
2L	12805656	2L_12805656_SNP [dm3] 2L_12805656_SNP [dm6]	T	C	1.670e^-5	0.542	INTERGENIC
3L	10861554	3L_10861554_SNP [dm3] 3L_10868454_SNP [dm6]	A	G	1.721e^-5	0.542	INTRON tna
2L	21901015	2L_21901015_SNP [dm3] 2L_21901015_SNP [dm6]	C	G	1.723e^-5	0.542	INTERGENIC
2L	12805608	2L_12805608_SNP [dm3] 2L_12805608_SNP [dm6]	G	T	1.724e^-5	0.542	INTERGENIC
2L	12805618	2L_12805618_SNP [dm3] 2L_12805618_SNP [dm6]	C	T	1.724e^-5	0.542	INTERGENIC
2L	12805619	2L_12805619_SNP [dm3] 2L_12805619_SNP [dm6]	G	A	1.724e^-5	0.542	INTERGENIC
2R	14724847	2R_14724847_SNP [dm3] 2R_18837342_SNP [dm6]	G	T	1.753e^-5	0.542	NON_SYNONYMOUS_CODING CG15099 UTR_3_PRIME CG15099 DOWNSTREAM CG15083
2L	21901118	2L_21901118_SNP [dm3] 2L_21901118_SNP [dm6]	A	G	1.761e^-5	0.542	INTERGENIC
2R	20992762	2R_20992762_SNP [dm3] 2R_25105239_SNP [dm6]	A	T	1.770e^-5	0.542	INTRON lov
2R	13074366	2R_13074366_DEL [dm3] 2R_17186861_DEL [dm6]	GGAG	G	1.771e^-5	0.542	DOWNSTREAM CR44388 INTERGENIC
2L	21913132	2L_21913132_SNP [dm3] 2L_21913132_SNP [dm6]	G	A	1.778e^-5	0.542	INTERGENIC	transposable element FlyBase
3L	3285134	3L_3285134_INS [dm3] 3L_3285134_INS [dm6]	A	AA	1.814e^-5	0.542	INTRON CG12017
3L	3285142	3L_3285142_SNP [dm3] 3L_3285142_SNP [dm6]	G	A	1.814e^-5	0.542	INTRON CG12017
3R	25204626	3R_25204626_SNP [dm3] 3R_29378904_SNP [dm6]	C	T	1.823e^-5	0.542	INTRON Ptp99A
3L	17957577	3L_17957577_SNP [dm3] 3L_17964477_SNP [dm6]	T	A	2.004e^-5	0.545	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
2R	10364096	2R_10364096_SNP [dm3] 2R_14476591_SNP [dm6]	A	C	2.042e^-5	0.545	EXON CR44462	TF binding site mE1_TFBS_sens
2L	13610291	2L_13610291_SNP [dm3] 2L_13610291_SNP [dm6]	C	T	2.042e^-5	0.545	NON_SYNONYMOUS_CODING kuz DOWNSTREAM mir-2489
X	6748010	X_6748010_SNP [dm3] X_6853977_SNP [dm6]	C	T	2.057e^-5	0.545	INTRON CG14434	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3L	17955262	3L_17955262_SNP [dm3] 3L_17962162_SNP [dm6]	C	T	2.110e^-5	0.545	UPSTREAM Eip75B INTRON Eip75B	TF binding site mE1_TFBS_Trl
2R	14567246	2R_14567246_SNP [dm3] 2R_18679741_SNP [dm6]	C	G	2.128e^-5	0.545	NON_SYNONYMOUS_CODING CG44435 UTR_3_PRIME CG44434	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
2R	19069092	2R_19069092_INS [dm3] 2R_23181569_INS [dm6]	G	GCTGT	2.143e^-5	0.545	INTRON CG34371	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19748696	2R_19748696_SNP [dm3] 2R_23861173_SNP [dm6]	G	C	2.148e^-5	0.545	INTRON TBPH	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	4812885	3L_4812885_SNP [dm3] 3L_4812885_SNP [dm6]	A	G	2.164e^-5	0.545	INTRON Dhc64C
X	901390	X_901390_SNP [dm3] X_1007357_SNP [dm6]	G	T	2.185e^-5	0.545	INTERGENIC
2R	19748353	2R_19748353_SNP [dm3] 2R_23860830_SNP [dm6]	T	C	2.202e^-5	0.545	SPLICE_SITE_REGION TBPH INTRON TBPH	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	6748001	X_6748001_SNP [dm3] X_6853968_SNP [dm6]	A	T	2.225e^-5	0.545	INTRON CG14434	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2R	17676052	2R_17676052_SNP [dm3] 2R_21788547_SNP [dm6]	A	C	2.227e^-5	0.545	INTERGENIC
3L	10861700	3L_10861700_SNP [dm3] 3L_10868600_SNP [dm6]	A	C	2.238e^-5	0.545	INTRON tna
3R	14838838	3R_14838838_SNP [dm3] 3R_19013116_SNP [dm6]	T	C	2.392e^-5	0.557	INTRON gukh	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	8075860	2L_8075860_SNP [dm3] 2L_8075860_SNP [dm6]	A	T	2.454e^-5	0.557	SPLICE_SITE_REGION Mcr INTRON Mcr
X	5206424	X_5206424_SNP [dm3] X_5312391_SNP [dm6]	C	T	2.460e^-5	0.557	UTR_5_PRIME dhd UPSTREAM TrxT & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	22011958	2L_22011958_SNP [dm3] 2L_22011958_SNP [dm6]	G	C	2.558e^-5	0.557	INTERGENIC
3L	2428384	3L_2428384_SNP [dm3] 3L_2428384_SNP [dm6]	C	T	2.633e^-5	0.557	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2896085	3L_2896085_SNP [dm3] 3L_2896085_SNP [dm6]	T	C	2.634e^-5	0.557	UPSTREAM Shab INTRON Shab	TF binding site mE1_TFBS_Trl
3L	18277762	3L_18277762_SNP [dm3] 3L_18284662_SNP [dm6]	T	C	2.657e^-5	0.557	INTERGENIC
3R	16987333	3R_16987333_SNP [dm3] 3R_21161611_SNP [dm6]	C	A	2.688e^-5	0.557	UPSTREAM CG10824 INTRON SNF4Agamma
3L	18277834	3L_18277834_SNP [dm3] 3L_18284734_SNP [dm6]	A	T	2.721e^-5	0.557	INTERGENIC
3L	18277835	3L_18277835_SNP [dm3] 3L_18284735_SNP [dm6]	T	A	2.721e^-5	0.557	INTERGENIC
3L	18277848	3L_18277848_SNP [dm3] 3L_18284748_SNP [dm6]	A	T	2.721e^-5	0.557	INTERGENIC
3L	10734158	3L_10734158_SNP [dm3] 3L_10741058_SNP [dm6]	T	C	2.735e^-5	0.557	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	21912804	2L_21912804_DEL [dm3] 2L_21912804_DEL [dm6]	TCCATTCATATTTAATGGCA...	G	2.736e^-5	0.557	INTERGENIC	transposable element FlyBase
2R	13473135	2R_13473135_SNP [dm3] 2R_17585630_SNP [dm6]	T	A	2.831e^-5	0.557	UTR_3_PRIME CG14483 UPSTREAM CR45275 DOWNSTREAM CG14483 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	13473151	2R_13473151_SNP [dm3] 2R_17585646_SNP [dm6]	A	T	2.831e^-5	0.557	UTR_3_PRIME CG14483 UPSTREAM CR45275 DOWNSTREAM RhoGAP54D	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	8075871	2L_8075871_SNP [dm3] 2L_8075871_SNP [dm6]	A	G	2.886e^-5	0.557	INTRON Mcr
3R	10744806	3R_10744806_SNP [dm3] 3R_14919084_SNP [dm6]	C	A	2.891e^-5	0.557	SYNONYMOUS_CODING Sdr
X	9073331	X_9073331_SNP [dm3] X_9179298_SNP [dm6]	T	G	2.891e^-5	0.557	UTR_3_PRIME mei-P26
2R	14724903	2R_14724903_SNP [dm3] 2R_18837398_SNP [dm6]	T	C	2.969e^-5	0.557	SYNONYMOUS_CODING CG15099 DOWNSTREAM CG15083
2L	5181776	2L_5181776_SNP [dm3] 2L_5181776_SNP [dm6]	A	G	3.008e^-5	0.557	SYNONYMOUS_CODING Msp300 INTRON Msp300
X	8722557	X_8722557_DEL [dm3] X_8828524_DEL [dm6]	AC	A	3.020e^-5	0.557	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19315003	2L_19315003_SNP [dm3] 2L_19315003_SNP [dm6]	A	G	3.042e^-5	0.557	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17496873	2R_17496873_SNP [dm3] 2R_21609368_SNP [dm6]	T	C	3.053e^-5	0.557	DOWNSTREAM CR43243 INTRON CG15673
3R	4825613	3R_4825613_SNP [dm3] 3R_8999891_SNP [dm6]	G	A	3.120e^-5	0.557	INTRON CG31100
3R	11586052	3R_11586052_SNP [dm3] 3R_15760330_SNP [dm6]	T	C	3.128e^-5	0.557	INTERGENIC
3L	1647129	3L_1647129_SNP [dm3] 3L_1647129_SNP [dm6]	A	G	3.161e^-5	0.557	NON_SYNONYMOUS_CODING CG17249 UPSTREAM Bro	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	19778785	2R_19778785_SNP [dm3] 2R_23891262_SNP [dm6]	T	G	3.186e^-5	0.557	SYNONYMOUS_CODING DNA-ligI UPSTREAM Dcp1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12698371	2L_12698371_SNP [dm3] 2L_12698371_SNP [dm6]	C	T	3.194e^-5	0.557	SYNONYMOUS_CODING PICK1 DOWNSTREAM CG17036	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21876370	3R_21876370_SNP [dm3] 3R_26050648_SNP [dm6]	T	G	3.219e^-5	0.557	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	901394	X_901394_SNP [dm3] X_1007361_SNP [dm6]	A	T	3.241e^-5	0.557	INTERGENIC
3R	467488	3R_467488_SNP [dm3] 3R_4641766_SNP [dm6]	A	G	3.251e^-5	0.557	UPSTREAM MED31 & 2 others INTRON CG9775	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	19623825	3R_19623825_SNP [dm3] 3R_23798103_SNP [dm6]	G	A	3.253e^-5	0.557	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8915122	3L_8915122_SNP [dm3] 3L_8922022_SNP [dm6]	T	A	3.291e^-5	0.557	INTRON Tsp66E
2L	1371353	2L_1371353_SNP [dm3] 2L_1371353_SNP [dm6]	T	G	3.297e^-5	0.557	INTERGENIC	TF binding site BDTNP1_TFBS_Med
3R	3271111	3R_3271111_SNP [dm3] 3R_7445389_SNP [dm6]	C	T	3.348e^-5	0.557	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	7750543	X_7750543_SNP [dm3] X_7856510_SNP [dm6]	G	T	3.395e^-5	0.557	INTERGENIC
3R	14282825	3R_14282825_SNP [dm3] 3R_18457103_SNP [dm6]	T	G	3.407e^-5	0.557	INTRON fru
2R	16406653	2R_16406653_SNP [dm3] 2R_20519148_SNP [dm6]	T	A	3.414e^-5	0.557	INTERGENIC
2R	16817260	2R_16817260_SNP [dm3] 2R_20929755_SNP [dm6]	T	G	3.483e^-5	0.563	INTRON Rx
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	3.563e^-5	0.564	EXON CR44950
2R	19880247	2R_19880247_SNP [dm3] 2R_23992724_SNP [dm6]	A	G	3.578e^-5	0.564	SYNONYMOUS_CODING CG3860 DOWNSTREAM Pask & 1 other
3L	10733914	3L_10733914_SNP [dm3] 3L_10740814_SNP [dm6]	T	G	3.633e^-5	0.564	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	21913134	2L_21913134_INS [dm3] 2L_21913134_INS [dm6]	A	AA	3.643e^-5	0.564	INTERGENIC	transposable element FlyBase
3R	461587	3R_461587_SNP [dm3] 3R_4635865_SNP [dm6]	C	T	3.670e^-5	0.564	DOWNSTREAM CR45673 INTERGENIC	TF binding site mE1_TFBS_D
3R	6931371	3R_6931371_SNP [dm3] 3R_11105649_SNP [dm6]	A	T	3.792e^-5	0.564	INTERGENIC
2L	3433431	2L_3433431_SNP [dm3] 2L_3433431_SNP [dm6]	T	A	3.823e^-5	0.564	INTERGENIC
2L	6100946	2L_6100946_SNP [dm3] 2L_6100946_SNP [dm6]	G	A	3.840e^-5	0.564	INTRON stai	TF binding site BDTNP1_TFBS_dl
2R	18652088	2R_18652088_SNP [dm3] 2R_22764583_SNP [dm6]	G	T	3.848e^-5	0.564	NON_SYNONYMOUS_CODING CG13527 INTRON CG42260
2L	6644839	2L_6644839_SNP [dm3] 2L_6644839_SNP [dm6]	T	C	4.011e^-5	0.564	INTRON CG31635	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	14895249	3R_14895249_DEL [dm3] 3R_19069527_DEL [dm6]	CCGTTCC	C	4.027e^-5	0.564	INTRON cdi
2R	13473132	2R_13473132_SNP [dm3] 2R_17585627_SNP [dm6]	A	G	4.063e^-5	0.564	UTR_3_PRIME CG14483 UPSTREAM CR45275 DOWNSTREAM CG14483 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	13473137	2R_13473137_MNP [dm3] 2R_17585632_MNP [dm6]	TTT	ACA	4.063e^-5	0.564	UTR_3_PRIME CG14483 UPSTREAM CR45275 DOWNSTREAM CG14483 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	13473140	2R_13473140_DEL [dm3] 2R_17585635_DEL [dm6]	CC	C	4.063e^-5	0.564	UTR_3_PRIME CG14483 UPSTREAM CR45275 DOWNSTREAM RhoGAP54D	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	13473146	2R_13473146_MNP [dm3] 2R_17585641_MNP [dm6]	GATT	CGGG	4.063e^-5	0.564	UTR_3_PRIME CG14483 UPSTREAM CR45275 DOWNSTREAM RhoGAP54D	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	21914924	2L_21914924_SNP [dm3] 2L_21914924_SNP [dm6]	T	C	4.074e^-5	0.564	NON_SYNONYMOUS_CODING CG31600
3R	13420181	3R_13420181_SNP [dm3] 3R_17594459_SNP [dm6]	A	G	4.090e^-5	0.564	NON_SYNONYMOUS_CODING CG7587 UPSTREAM Sgs5
2L	6514461	2L_6514461_DEL [dm3] 2L_6514461_DEL [dm6]	TCTATCATT	T	4.092e^-5	0.564	INTRON CG31637
2L	3880869	2L_3880869_SNP [dm3] 2L_3880869_SNP [dm6]	C	A	4.113e^-5	0.564	UPSTREAM capu INTRON capu
3L	17949466	3L_17949466_SNP [dm3] 3L_17956366_SNP [dm6]	T	C	4.123e^-5	0.564	INTRON Eip75B	TF binding site mE1_TFBS_cad
3L	7138315	3L_7138315_SNP [dm3] 3L_7145215_SNP [dm6]	G	A	4.124e^-5	0.564	INTRON corn
3L	1647215	3L_1647215_SNP [dm3] 3L_1647215_SNP [dm6]	T	C	4.252e^-5	0.574	SYNONYMOUS_CODING CG17249 UPSTREAM Bro	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	14150745	3R_14150745_SNP [dm3] 3R_18325023_SNP [dm6]	T	A	4.252e^-5	0.574	INTRON CG31235
2R	13473143	2R_13473143_SNP [dm3] 2R_17585638_SNP [dm6]	G	T	4.318e^-5	0.577	UTR_3_PRIME CG14483 UPSTREAM CR45275 DOWNSTREAM RhoGAP54D	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	26001618	3R_26001618_SNP [dm3] 3R_30175896_SNP [dm6]	C	T	4.341e^-5	0.577	UTR_3_PRIME CG1983 DOWNSTREAM CG1983	regulatory region REDfly_CRMs
3L	20928276	3L_20928276_SNP [dm3] 3L_20935176_SNP [dm6]	T	C	4.402e^-5	0.581	INTRON fng
X	12266372	X_12266372_SNP [dm3] X_12372339_SNP [dm6]	A	G	4.463e^-5	0.581	UPSTREAM CG2577 INTERGENIC
3L	4758037	3L_4758037_SNP [dm3] 3L_4758037_SNP [dm6]	C	T	4.463e^-5	0.581	SYNONYMOUS_CODING CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17672539	X_17672539_SNP [dm3] X_17778506_SNP [dm6]	A	T	4.528e^-5	0.583	UTR_3_PRIME unc-4
3L	7485366	3L_7485366_SNP [dm3] 3L_7492266_SNP [dm6]	A	T	4.541e^-5	0.583	NON_SYNONYMOUS_CODING Cyp316a1
2L	21900197	2L_21900197_SNP [dm3] 2L_21900197_SNP [dm6]	C	T	4.586e^-5	0.583	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	8605170	3L_8605170_SNP [dm3] 3L_8612070_SNP [dm6]	A	G	4.653e^-5	0.583	INTRON CG6282
3L	8514365	3L_8514365_DEL [dm3] 3L_8521265_DEL [dm6]	GG	G	4.675e^-5	0.583	DOWNSTREAM GstO3 & 1 other INTRON se	TF binding site mE1_TFBS_sens
2L	21866518	2L_21866518_SNP [dm3] 2L_21866518_SNP [dm6]	A	G	4.682e^-5	0.583	UPSTREAM CR44917 & 1 other DOWNSTREAM CR44919 INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19625266	3R_19625266_SNP [dm3] 3R_23799544_SNP [dm6]	T	C	4.694e^-5	0.583	INTRON mbc
2R	10587498	2R_10587498_SNP [dm3] 2R_14699993_SNP [dm6]	T	A	4.827e^-5	0.594	INTRON mspo
3L	18637672	3L_18637672_SNP [dm3] 3L_18644572_SNP [dm6]	C	G	4.897e^-5	0.594	INTRON MYPT-75D
3L	8915127	3L_8915127_SNP [dm3] 3L_8922027_SNP [dm6]	G	A	4.907e^-5	0.594	INTRON Tsp66E
X	12192743	X_12192743_SNP [dm3] X_12298710_SNP [dm6]	T	G	4.957e^-5	0.594	INTRON Ten-a
3R	22409741	3R_22409741_SNP [dm3] 3R_26584019_SNP [dm6]	C	G	4.989e^-5	0.594	DOWNSTREAM scrib INTRON scrib
2L	8010038	2L_8010038_SNP [dm3] 2L_8010038_SNP [dm6]	G	A	4.989e^-5	0.594	NON_SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2R	10353349	2R_10353349_SNP [dm3] 2R_14465844_SNP [dm6]	A	C	5.029e^-5	0.594	UTR_3_PRIME Oaz
X	13912671	X_13912671_SNP [dm3] X_14018638_SNP [dm6]	G	A	5.131e^-5	0.594	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9515430	3L_9515430_SNP [dm3] 3L_9522330_SNP [dm6]	A	G	5.140e^-5	0.594	INTRON CG33700
3L	17955240	3L_17955240_SNP [dm3] 3L_17962140_SNP [dm6]	T	C	5.165e^-5	0.594	UPSTREAM Eip75B INTRON Eip75B
3L	9704923	3L_9704923_SNP [dm3] 3L_9711823_SNP [dm6]	A	G	5.169e^-5	0.594	SYNONYMOUS_CODING SH3PX1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	19027934	2L_19027934_SNP [dm3] 2L_19027934_SNP [dm6]	T	C	5.183e^-5	0.594	UTR_5_PRIME Side
3L	14236308	3L_14236308_SNP [dm3] 3L_14243208_SNP [dm6]	A	T	5.210e^-5	0.594	INTERGENIC
3R	25202122	3R_25202122_SNP [dm3] 3R_29376400_SNP [dm6]	C	A	5.228e^-5	0.594	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	20009415	3L_20009415_SNP [dm3] 3L_20016315_SNP [dm6]	G	C	5.341e^-5	0.599	NON_SYNONYMOUS_CODING kug
3R	23971028	3R_23971028_DEL [dm3] 3R_28145306_DEL [dm6]	CTTTGG	C	5.375e^-5	0.599	INTERGENIC
3R	15967940	3R_15967940_SNP [dm3] 3R_20142218_SNP [dm6]	G	A	5.421e^-5	0.599	INTERGENIC
2L	18391734	2L_18391734_SNP [dm3] 2L_18391734_SNP [dm6]	T	C	5.439e^-5	0.599	INTRON Fas3
2R	12704562	2R_12704562_SNP [dm3] 2R_16817057_SNP [dm6]	T	C	5.468e^-5	0.599	SYNONYMOUS_CODING CG5550 DOWNSTREAM CR43417	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16973912	2R_16973912_SNP [dm3] 2R_21086407_SNP [dm6]	C	T	5.474e^-5	0.599	SYNONYMOUS_CODING Treh	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	8915134	3L_8915134_SNP [dm3] 3L_8922034_SNP [dm6]	G	T	5.525e^-5	0.599	INTRON Tsp66E
3L	17193468	3L_17193468_SNP [dm3] 3L_17200368_SNP [dm6]	G	A	5.525e^-5	0.599	INTRON Rbp6
3R	11226678	3R_11226678_SNP [dm3] 3R_15400956_SNP [dm6]	C	T	5.563e^-5	0.599	UTR_3_PRIME Rbp DOWNSTREAM Rbp
3R	19625641	3R_19625641_SNP [dm3] 3R_23799919_SNP [dm6]	G	A	5.700e^-5	0.605	SYNONYMOUS_CODING mbc
2L	2895529	2L_2895529_SNP [dm3] 2L_2895529_SNP [dm6]	A	T	5.726e^-5	0.605	INTRON lilli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15394516	2R_15394516_SNP [dm3] 2R_19507011_SNP [dm6]	T	A	5.731e^-5	0.605	UPSTREAM tRNA:H:56E INTERGENIC
2R	15267497	2R_15267497_SNP [dm3] 2R_19379992_SNP [dm6]	G	A	5.741e^-5	0.605	SYNONYMOUS_CODING CG10062 UPSTREAM CG10073
3L	10997038	3L_10997038_SNP [dm3] 3L_11003938_SNP [dm6]	T	A	5.805e^-5	0.608	INTRON klu
2R	19774018	2R_19774018_SNP [dm3] 2R_23886495_SNP [dm6]	A	T	5.850e^-5	0.609	UPSTREAM CG5597 INTERGENIC
2R	13074375	2R_13074375_DEL [dm3] 2R_17186870_DEL [dm6]	GG	G	6.068e^-5	0.61	DOWNSTREAM CR44388 INTERGENIC
2R	14083744	2R_14083744_SNP [dm3] 2R_18196239_SNP [dm6]	C	A	6.077e^-5	0.61	INTERGENIC
2L	3880200	2L_3880200_SNP [dm3] 2L_3880200_SNP [dm6]	T	C	6.085e^-5	0.61	UPSTREAM capu INTRON capu
3R	3919883	3R_3919883_SNP [dm3] 3R_8094161_SNP [dm6]	C	T	6.108e^-5	0.61	SYNONYMOUS_CODING CG7900	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	13513472	X_13513472_SNP [dm3] X_13619439_SNP [dm6]	G	T	6.135e^-5	0.61	UTR_3_PRIME CG2691 DOWNSTREAM Tango2
3L	1646534	3L_1646534_SNP [dm3] 3L_1646534_SNP [dm6]	A	G	6.157e^-5	0.61	SYNONYMOUS_CODING CG17249 DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8810225	3L_8810225_SNP [dm3] 3L_8817125_SNP [dm6]	G	T	6.185e^-5	0.61	INTERGENIC
2L	8807137	2L_8807137_SNP [dm3] 2L_8807137_SNP [dm6]	T	C	6.189e^-5	0.61	INTERGENIC
2L	21810115	2L_21810115_SNP [dm3] 2L_21810115_SNP [dm6]	A	G	6.233e^-5	0.61	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19097593	3L_19097593_SNP [dm3] 3L_19104493_SNP [dm6]	A	G	6.251e^-5	0.61	DOWNSTREAM CG14082 INTERGENIC
3L	9717931	3L_9717931_SNP [dm3] 3L_9724831_SNP [dm6]	G	T	6.266e^-5	0.61	SYNONYMOUS_CODING defl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13420189	3R_13420189_SNP [dm3] 3R_17594467_SNP [dm6]	T	A	6.273e^-5	0.61	SYNONYMOUS_CODING CG7587 UPSTREAM Sgs5
3R	6730585	3R_6730585_SNP [dm3] 3R_10904863_SNP [dm6]	G	A	6.341e^-5	0.61	INTERGENIC
3L	9718012	3L_9718012_SNP [dm3] 3L_9724912_SNP [dm6]	G	A	6.351e^-5	0.61	SYNONYMOUS_CODING defl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7138322	3L_7138322_SNP [dm3] 3L_7145222_SNP [dm6]	A	G	6.430e^-5	0.61	INTRON corn
3R	3946147	3R_3946147_SNP [dm3] 3R_8120425_SNP [dm6]	G	T	6.447e^-5	0.61	INTRON puc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	21876295	3R_21876295_SNP [dm3] 3R_26050573_SNP [dm6]	T	C	6.526e^-5	0.61	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6748000	X_6748000_SNP [dm3] X_6853967_SNP [dm6]	G	T	6.563e^-5	0.61	INTRON CG14434	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2L	4898025	2L_4898025_SNP [dm3] 2L_4898025_SNP [dm6]	G	T	6.618e^-5	0.61	INTRON CG3036
2L	8006740	2L_8006740_SNP [dm3] 2L_8006740_SNP [dm6]	G	A	6.663e^-5	0.61	SYNONYMOUS_CODING Spn28Dc	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5929759	2L_5929759_SNP [dm3] 2L_5929759_SNP [dm6]	A	T	6.678e^-5	0.61	INTRON dsf
3L	7462542	3L_7462542_SNP [dm3] 3L_7469442_SNP [dm6]	C	A	6.710e^-5	0.61	DOWNSTREAM CG8543 & 3 others INTERGENIC
X	7136147	X_7136147_SNP [dm3] X_7242114_SNP [dm6]	A	T	6.831e^-5	0.61	DOWNSTREAM CG9650 INTRON CR44357	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2R	16115345	2R_16115345_SNP [dm3] 2R_20227840_SNP [dm6]	G	A	6.835e^-5	0.61	INTERGENIC
2R	5079848	2R_5079848_SNP [dm3] 2R_9192343_SNP [dm6]	G	T	6.853e^-5	0.61	UPSTREAM CG8026 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26964768	3R_26964768_SNP [dm3] 3R_31139046_SNP [dm6]	T	C	6.856e^-5	0.61	INTRON Gycbeta100B
3L	10861710	3L_10861710_SNP [dm3] 3L_10868610_SNP [dm6]	G	C	6.871e^-5	0.61	INTRON tna
3L	8736299	3L_8736299_SNP [dm3] 3L_8743199_SNP [dm6]	A	G	6.882e^-5	0.61	INTRON Prm	TF binding site BDTNP1_TFBS_twi
3L	7484430	3L_7484430_SNP [dm3] 3L_7491330_SNP [dm6]	G	A	6.899e^-5	0.61	UPSTREAM Cyp316a1 INTERGENIC
3L	10861782	3L_10861782_SNP [dm3] 3L_10868682_SNP [dm6]	C	T	6.931e^-5	0.61	INTRON tna
3L	17952668	3L_17952668_SNP [dm3] 3L_17959568_SNP [dm6]	G	T	6.999e^-5	0.61	SYNONYMOUS_CODING Eip75B
3L	13069155	3L_13069155_SNP [dm3] 3L_13076055_SNP [dm6]	C	T	7.002e^-5	0.61	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da
2R	19884741	2R_19884741_SNP [dm3] 2R_23997218_SNP [dm6]	C	G	7.016e^-5	0.61	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17167769	3L_17167769_SNP [dm3] 3L_17174669_SNP [dm6]	C	G	7.032e^-5	0.61	INTRON Rbp6
3L	17112929	3L_17112929_SNP [dm3] 3L_17119829_SNP [dm6]	T	G	7.057e^-5	0.61	INTRON Rbp6
3R	22852123	3R_22852123_SNP [dm3] 3R_27026401_SNP [dm6]	C	G	7.066e^-5	0.61	UPSTREAM CG6271 INTRON RYa-R
3R	22852128	3R_22852128_SNP [dm3] 3R_27026406_SNP [dm6]	C	A	7.066e^-5	0.61	UPSTREAM CG6271 INTRON RYa-R
2L	21901445	2L_21901445_SNP [dm3] 2L_21901445_SNP [dm6]	T	A	7.117e^-5	0.611	INTERGENIC
3L	11017115	3L_11017115_SNP [dm3] 3L_11024015_SNP [dm6]	C	A	7.188e^-5	0.611	SYNONYMOUS_CODING Fad2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3285689	3L_3285689_DEL [dm3] 3L_3285689_DEL [dm6]	TTGGCGCCAGATGAATAA...	C	7.201e^-5	0.611	INTRON CG12017
2L	5366487	2L_5366487_SNP [dm3] 2L_5366487_SNP [dm6]	C	G	7.246e^-5	0.611	DOWNSTREAM nompC INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	8811416	3L_8811416_DEL [dm3] 3L_8818316_DEL [dm6]	CG	T	7.257e^-5	0.611	INTERGENIC
3L	5692639	3L_5692639_SNP [dm3] 3L_5699539_SNP [dm6]	C	G	7.270e^-5	0.611	INTRON sif	TF binding site mE1_TFBS_chinmo
2R	19614706	2R_19614706_SNP [dm3] 2R_23727183_SNP [dm6]	G	T	7.364e^-5	0.614	INTRON Sesn
3R	480817	3R_480817_SNP [dm3] 3R_4655095_SNP [dm6]	A	C	7.435e^-5	0.614	UPSTREAM spartin DOWNSTREAM Karybeta3 INTRON spartin	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
3L	19311457	3L_19311457_SNP [dm3] 3L_19318357_SNP [dm6]	T	C	7.487e^-5	0.614	INTRON pip	TF binding site mE1_TFBS_cad
3R	4760352	3R_4760352_DEL [dm3] 3R_8934630_DEL [dm6]	ATTGCTTATCAA...	A	7.499e^-5	0.614	UPSTREAM osk EXON CR44020	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	8164115	X_8164115_SNP [dm3] X_8270082_SNP [dm6]	A	G	7.524e^-5	0.614	UTR_3_PRIME Corp INTRON CG1632
3R	4711842	3R_4711842_SNP [dm3] 3R_8886120_SNP [dm6]	T	C	7.542e^-5	0.614	INTRON pyd
2R	15939781	2R_15939781_SNP [dm3] 2R_20052276_SNP [dm6]	G	A	7.604e^-5	0.614	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	14370112	3L_14370112_SNP [dm3] 3L_14377012_SNP [dm6]	C	A	7.606e^-5	0.614	INTERGENIC
X	5367570	X_5367570_DEL [dm3] X_5473537_DEL [dm6]	AGTTA	A	7.620e^-5	0.614	INTRON SPR
3L	5891752	3L_5891752_SNP [dm3] 3L_5898652_SNP [dm6]	A	C	7.681e^-5	0.614	NON_SYNONYMOUS_CODING CG5592 UPSTREAM CG32409	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	21913056	2L_21913056_SNP [dm3] 2L_21913056_SNP [dm6]	C	G	7.715e^-5	0.614	INTERGENIC	transposable element FlyBase
3L	18199282	3L_18199282_SNP [dm3] 3L_18206182_SNP [dm6]	C	A	7.725e^-5	0.614	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	15701029	3L_15701029_SNP [dm3] 3L_15707929_SNP [dm6]	G	A	7.745e^-5	0.614	INTERGENIC
2R	14083752	2R_14083752_SNP [dm3] 2R_18196247_SNP [dm6]	G	A	7.765e^-5	0.614	INTERGENIC
3L	3162829	3L_3162829_SNP [dm3] 3L_3162829_SNP [dm6]	C	T	7.850e^-5	0.615	SYNONYMOUS_CODING rasp DOWNSTREAM pfk & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23976258	3R_23976258_INS [dm3] 3R_28150536_INS [dm6]	T	TTAAGTCCCGCTT...	7.868e^-5	0.615	INTRON CG34354
2L	676582	2L_676582_SNP [dm3] 2L_676582_SNP [dm6]	A	G	7.883e^-5	0.615	INTRON ds
2L	12345879	2L_12345879_SNP [dm3] 2L_12345879_SNP [dm6]	T	C	7.912e^-5	0.615	INTRON bru-2	TF binding site BDTNP1_TFBS_twi
3R	10744627	3R_10744627_SNP [dm3] 3R_14918905_SNP [dm6]	C	A	7.959e^-5	0.617	NON_SYNONYMOUS_CODING Sdr
2R	20926329	2R_20926329_SNP [dm3] 2R_25038806_SNP [dm6]	T	G	8.005e^-5	0.618	INTRON Nplp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_eve mE1_TFBS_HSA
2R	16034766	2R_16034766_SNP [dm3] 2R_20147261_SNP [dm6]	G	A	8.144e^-5	0.619	DOWNSTREAM CG11041 INTERGENIC
3L	3543404	3L_3543404_SNP [dm3] 3L_3543404_SNP [dm6]	G	T	8.259e^-5	0.619	UPSTREAM Eip63E INTRON Eip63E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	8811148	3L_8811148_SNP [dm3] 3L_8818048_SNP [dm6]	T	A	8.338e^-5	0.619	INTERGENIC
3L	8812129	3L_8812129_SNP [dm3] 3L_8819029_SNP [dm6]	T	A	8.338e^-5	0.619	INTERGENIC
2L	21855687	2L_21855687_SNP [dm3] 2L_21855687_SNP [dm6]	G	T	8.368e^-5	0.619	INTRON CR44917	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	4123732	X_4123732_DEL [dm3] X_4229699_DEL [dm6]	AA	A	8.402e^-5	0.619	INTERGENIC
3R	10715555	3R_10715555_SNP [dm3] 3R_14889833_SNP [dm6]	C	T	8.475e^-5	0.619	SYNONYMOUS_CODING CycC UPSTREAM CG3731 DOWNSTREAM CG33332	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	9166754	2R_9166754_SNP [dm3] 2R_13279249_SNP [dm6]	C	T	8.505e^-5	0.619	INTRON Dh31-R
3L	611482	3L_611482_SNP [dm3] 3L_611482_SNP [dm6]	T	G	8.510e^-5	0.619	INTERGENIC
2L	8436236	2L_8436236_SNP [dm3] 2L_8436236_SNP [dm6]	G	C	8.580e^-5	0.619	INTRON D12	TF binding site mE1_TFBS_sens
2L	8436259	2L_8436259_SNP [dm3] 2L_8436259_SNP [dm6]	C	T	8.580e^-5	0.619	INTRON D12	TF binding site mE1_TFBS_sens
2L	8436278	2L_8436278_SNP [dm3] 2L_8436278_SNP [dm6]	T	C	8.580e^-5	0.619	INTRON D12	TF binding site mE1_TFBS_sens
2L	8436402	2L_8436402_SNP [dm3] 2L_8436402_SNP [dm6]	T	C	8.580e^-5	0.619	SYNONYMOUS_CODING D12	TF binding site mE1_TFBS_sens
2L	8436423	2L_8436423_SNP [dm3] 2L_8436423_SNP [dm6]	G	A	8.580e^-5	0.619	SYNONYMOUS_CODING D12 UPSTREAM Chrac-14	TF binding site mE1_TFBS_sens
3R	26964743	3R_26964743_SNP [dm3] 3R_31139021_SNP [dm6]	G	A	8.613e^-5	0.619	INTRON Gycbeta100B
2L	21909882	2L_21909882_SNP [dm3] 2L_21909882_SNP [dm6]	C	T	8.699e^-5	0.619	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	8915136	3L_8915136_SNP [dm3] 3L_8922036_SNP [dm6]	T	G	8.714e^-5	0.619	INTRON Tsp66E
X	7318074	X_7318074_SNP [dm3] X_7424041_SNP [dm6]	C	A	8.738e^-5	0.619	DOWNSTREAM CG15036 INTERGENIC
2L	4512873	2L_4512873_SNP [dm3] 2L_4512873_SNP [dm6]	C	T	8.739e^-5	0.619	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16496816	2R_16496816_SNP [dm3] 2R_20609311_SNP [dm6]	T	C	8.741e^-5	0.619	SYNONYMOUS_CODING Hil	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2728183	2L_2728183_SNP [dm3] 2L_2728183_SNP [dm6]	C	T	8.767e^-5	0.619	INTRON CG31689
X	5066914	X_5066914_SNP [dm3] X_5172881_SNP [dm6]	T	C	8.787e^-5	0.619	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16080531	2L_16080531_SNP [dm3] 2L_16080531_SNP [dm6]	T	A	8.816e^-5	0.619	SYNONYMOUS_CODING beat-Ia	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10861613	3L_10861613_MNP [dm3] 3L_10868513_MNP [dm6]	ACA	TAG	8.845e^-5	0.619	INTRON tna
3L	10861616	3L_10861616_DEL [dm3] 3L_10868516_DEL [dm6]	ACATT	A	8.845e^-5	0.619	INTRON tna
3R	19624530	3R_19624530_SNP [dm3] 3R_23798808_SNP [dm6]	G	C	8.893e^-5	0.619	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	8915142	3L_8915142_SNP [dm3] 3L_8922042_SNP [dm6]	A	G	8.911e^-5	0.619	INTRON Tsp66E
2L	12449540	2L_12449540_SNP [dm3] 2L_12449540_SNP [dm6]	A	G	9.016e^-5	0.622	INTRON Oatp33Eb
2R	15939780	2R_15939780_SNP [dm3] 2R_20052275_SNP [dm6]	G	A	9.042e^-5	0.622	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	3528132	X_3528132_SNP [dm3] X_3634099_SNP [dm6]	T	G	9.181e^-5	0.622	INTRON AstA-R1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14314146	3L_14314146_SNP [dm3] 3L_14321046_SNP [dm6]	T	G	9.199e^-5	0.622	INTRON fz
3L	718515	3L_718515_SNP [dm3] 3L_718515_SNP [dm6]	A	C	9.200e^-5	0.622	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12805458	2L_12805458_SNP [dm3] 2L_12805458_SNP [dm6]	C	T	9.221e^-5	0.622	INTERGENIC
2R	9385610	2R_9385610_SNP [dm3] 2R_13498105_SNP [dm6]	T	A	9.287e^-5	0.622	INTRON drk
2R	3134897	2R_3134897_SNP [dm3] 2R_7247392_SNP [dm6]	T	G	9.342e^-5	0.622	INTERGENIC	TF binding site mE1_TFBS_cad
3L	8753283	3L_8753283_SNP [dm3] 3L_8760183_SNP [dm6]	C	T	9.346e^-5	0.622	SYNONYMOUS_CODING Fhos
X	54371	X_54371_SNP [dm3] X_157984_SNP [dm6]	G	T	9.363e^-5	0.622	INTRON tyn	transposable element FlyBase
2R	15939774	2R_15939774_SNP [dm3] 2R_20052269_SNP [dm6]	C	T	9.365e^-5	0.622	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	17577554	2R_17577554_SNP [dm3] 2R_21690049_SNP [dm6]	G	C	9.388e^-5	0.622	NON_SYNONYMOUS_CODING CG10307 DOWNSTREAM Tim10 & 1 other	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2L	16105326	2L_16105326_SNP [dm3] 2L_16105326_SNP [dm6]	A	G	9.424e^-5	0.622	INTERGENIC
3R	19625870	3R_19625870_SNP [dm3] 3R_23800148_SNP [dm6]	G	A	9.437e^-5	0.622	NON_SYNONYMOUS_CODING mbc
3R	14282831	3R_14282831_SNP [dm3] 3R_18457109_SNP [dm6]	C	T	9.454e^-5	0.622	INTRON fru
2L	21914973	2L_21914973_SNP [dm3] 2L_21914973_SNP [dm6]	T	C	9.482e^-5	0.622	SPLICE_SITE_REGION CG31600 INTRON CG31600
3L	9718027	3L_9718027_SNP [dm3] 3L_9724927_SNP [dm6]	G	A	9.640e^-5	0.624	SYNONYMOUS_CODING defl	TF binding site mE1_TFBS_cad
3L	5829494	3L_5829494_SNP [dm3] 3L_5836394_SNP [dm6]	T	A	9.654e^-5	0.624	INTRON vn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA
2L	8052454	2L_8052454_SNP [dm3] 2L_8052454_SNP [dm6]	G	A	9.682e^-5	0.624	SYNONYMOUS_CODING CG7466
3L	11809372	3L_11809372_SNP [dm3] 3L_11816272_SNP [dm6]	C	T	9.711e^-5	0.624	SYNONYMOUS_CODING CG14130 DOWNSTREAM CG5946
3L	6292430	3L_6292430_INS [dm3] 3L_6299330_INS [dm6]	T	TT	9.739e^-5	0.624	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10347193	2R_10347193_SNP [dm3] 2R_14459688_SNP [dm6]	T	C	9.776e^-5	0.624	INTRON Oaz
2R	13204786	2R_13204786_SNP [dm3] 2R_17317281_SNP [dm6]	T	C	9.818e^-5	0.624	INTRON mbl
3L	2475262	3L_2475262_SNP [dm3] 3L_2475262_SNP [dm6]	T	A	9.837e^-5	0.624	SYNONYMOUS_CODING CG16762 DOWNSTREAM Cyp4d20 INTRON CG45186	TF binding site mE1_TFBS_HSA
2R	15866600	2R_15866600_SNP [dm3] 2R_19979095_SNP [dm6]	G	A	9.846e^-5	0.624	UPSTREAM CG8654 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2202501	3L_2202501_SNP [dm3] 3L_2202501_SNP [dm6]	T	A	9.847e^-5	0.624	INTERGENIC
2L	6100691	2L_6100691_INS [dm3] 2L_6100691_INS [dm6]	T	TT	9.908e^-5	0.624	INTRON stai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14336960	3L_14336960_SNP [dm3] 3L_14343860_SNP [dm6]	T	C	9.922e^-5	0.624	INTRON fz
2R	6929352	2R_6929352_SNP [dm3] 2R_11041847_SNP [dm6]	A	T	9.954e^-5	0.624	INTRON luna	TF binding site mE1_TFBS_cad
2R	14015164	2R_14015164_SNP [dm3] 2R_18127659_SNP [dm6]	G	C	1.004e^-4	0.627	UPSTREAM Dip3 INTRON Spn55B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3L	8843203	3L_8843203_SNP [dm3] 3L_8850103_SNP [dm6]	G	A	1.007e^-4	0.627	INTRON dally
2R	10862759	2R_10862759_SNP [dm3] 2R_14975254_SNP [dm6]	A	T	1.015e^-4	0.629	UPSTREAM ckn INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21851919	2L_21851919_INS [dm3] 2L_21851919_INS [dm6]	T	TTCT	1.023e^-4	0.629	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	14295844	X_14295844_SNP [dm3] X_14401811_SNP [dm6]	C	T	1.023e^-4	0.629	INTRON dpr8
3R	1194260	3R_1194260_DEL [dm3] 3R_5368538_DEL [dm6]	CT	C	1.025e^-4	0.629	UPSTREAM Cerk EXON CR44103	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	18460132	2R_18460132_SNP [dm3] 2R_22572627_SNP [dm6]	T	G	1.027e^-4	0.629	INTRON dnr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6472253	3L_6472253_SNP [dm3] 3L_6479153_SNP [dm6]	A	C	1.034e^-4	0.63	INTRON CG42747
3R	26864084	3R_26864084_SNP [dm3] 3R_31038362_SNP [dm6]	T	C	1.037e^-4	0.63	INTERGENIC
2L	21909898	2L_21909898_DEL [dm3] 2L_21909898_DEL [dm6]	CATAATAGGG	C	1.038e^-4	0.63	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	8514345	3L_8514345_SNP [dm3] 3L_8521245_SNP [dm6]	G	A	1.045e^-4	0.631	SPLICE_SITE_REGION se DOWNSTREAM GstO3 & 1 other INTRON se	TF binding site mE1_TFBS_sens
2L	10722603	2L_10722603_SNP [dm3] 2L_10722603_SNP [dm6]	A	T	1.053e^-4	0.631	INTERGENIC
3R	10752798	3R_10752798_SNP [dm3] 3R_14927076_SNP [dm6]	C	T	1.061e^-4	0.631	INTERGENIC
2R	3954596	2R_3954596_SNP [dm3] 2R_8067091_SNP [dm6]	T	A	1.061e^-4	0.631	UPSTREAM lig INTRON CG17977	TF binding site BDTNP1_TFBS_dl
2L	7586313	2L_7586313_SNP [dm3] 2L_7586313_SNP [dm6]	G	C	1.068e^-4	0.631	INTERGENIC
2L	11222790	2L_11222790_DEL [dm3] 2L_11222790_DEL [dm6]	TTTG	T	1.072e^-4	0.631	INTRON ab
2R	19879975	2R_19879975_SNP [dm3] 2R_23992452_SNP [dm6]	A	T	1.074e^-4	0.631	UTR_3_PRIME CG3860 DOWNSTREAM Pask & 1 other
2L	1542672	2L_1542672_SNP [dm3] 2L_1542672_SNP [dm6]	C	T	1.074e^-4	0.631	INTERGENIC
3R	4823138	3R_4823138_DEL [dm3] 3R_8997416_DEL [dm6]	ACAATTGACATAAACAAACT...	A	1.078e^-4	0.631	UPSTREAM CG11977 INTRON CG31100
2L	6100966	2L_6100966_SNP [dm3] 2L_6100966_SNP [dm6]	C	A	1.079e^-4	0.631	INTRON stai	TF binding site BDTNP1_TFBS_dl
2R	18652338	2R_18652338_SNP [dm3] 2R_22764833_SNP [dm6]	A	C	1.079e^-4	0.631	UTR_3_PRIME CG13527 INTRON CG42260 & 1 other
3L	18277824	3L_18277824_SNP [dm3] 3L_18284724_SNP [dm6]	A	C	1.081e^-4	0.631	INTERGENIC
3R	13570318	3R_13570318_SNP [dm3] 3R_17744596_SNP [dm6]	C	A	1.084e^-4	0.631	INTRON TyrRII	TF binding site mE1_TFBS_cad
3R	10747071	3R_10747071_SNP [dm3] 3R_14921349_SNP [dm6]	A	G	1.088e^-4	0.631	INTRON Sdr
2R	10321133	2R_10321133_SNP [dm3] 2R_14433628_SNP [dm6]	G	T	1.099e^-4	0.631	EXON CR45277	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3R	19625264	3R_19625264_SNP [dm3] 3R_23799542_SNP [dm6]	T	C	1.109e^-4	0.631	INTRON mbc
2L	4382305	2L_4382305_SNP [dm3] 2L_4382305_SNP [dm6]	T	G	1.109e^-4	0.631	NON_SYNONYMOUS_CODING CG17612 DOWNSTREAM CG3338	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	16724386	3L_16724386_DEL [dm3] 3L_16731286_DEL [dm6]	TAACAATATT	T	1.111e^-4	0.631	UPSTREAM Dbp73D INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	8811411	3L_8811411_SNP [dm3] 3L_8818311_SNP [dm6]	A	T	1.114e^-4	0.631	INTERGENIC
2R	16817443	2R_16817443_DEL [dm3] 2R_20929938_DEL [dm6]	GCTAGGGGATTG...	G	1.117e^-4	0.631	INTRON Rx
2R	10969472	2R_10969472_SNP [dm3] 2R_15081967_SNP [dm6]	A	T	1.119e^-4	0.631	INTERGENIC
X	9908472	X_9908472_SNP [dm3] X_10014439_SNP [dm6]	C	T	1.124e^-4	0.631	DOWNSTREAM CG2990 INTERGENIC
3L	9326989	3L_9326989_SNP [dm3] 3L_9333889_SNP [dm6]	G	T	1.132e^-4	0.631	UPSTREAM PGRP-LA INTERGENIC
3R	3139399	3R_3139399_SNP [dm3] 3R_7313677_SNP [dm6]	A	T	1.135e^-4	0.631	UPSTREAM CR44334 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	2202502	3L_2202502_SNP [dm3] 3L_2202502_SNP [dm6]	C	T	1.136e^-4	0.631	INTERGENIC
3R	23988013	3R_23988013_SNP [dm3] 3R_28162291_SNP [dm6]	T	C	1.145e^-4	0.631	INTRON CG34354
3R	6929027	3R_6929027_SNP [dm3] 3R_11103305_SNP [dm6]	C	T	1.151e^-4	0.631	INTERGENIC
3R	26964704	3R_26964704_SNP [dm3] 3R_31138982_SNP [dm6]	T	C	1.151e^-4	0.631	INTRON Gycbeta100B
2R	11919363	2R_11919363_SNP [dm3] 2R_16031858_SNP [dm6]	C	T	1.153e^-4	0.631	UPSTREAM SP2353 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8812046	3L_8812046_SNP [dm3] 3L_8818946_SNP [dm6]	T	A	1.161e^-4	0.631	INTERGENIC
3L	9713996	3L_9713996_SNP [dm3] 3L_9720896_SNP [dm6]	T	C	1.162e^-4	0.631	SYNONYMOUS_CODING nbs UTR_3_PRIME nbs DOWNSTREAM CG14174	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18622726	2R_18622726_SNP [dm3] 2R_22735221_SNP [dm6]	G	T	1.163e^-4	0.631	INTRON jbug
2L	22129756	2L_22129756_SNP [dm3] 2L_22129756_SNP [dm6]	G	A	1.169e^-4	0.631	UTR_5_PRIME CycK	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	12807890	2L_12807890_SNP [dm3] 2L_12807890_SNP [dm6]	T	A	1.174e^-4	0.631	EXON CR43818
3R	26957946	3R_26957946_SNP [dm3] 3R_31132224_SNP [dm6]	C	T	1.174e^-4	0.631	UPSTREAM CR43458 INTERGENIC
2L	21916683	2L_21916683_SNP [dm3] 2L_21916683_SNP [dm6]	C	T	1.178e^-4	0.631	SYNONYMOUS_CODING CG11634
2L	16105417	2L_16105417_SNP [dm3] 2L_16105417_SNP [dm6]	A	T	1.181e^-4	0.631	INTERGENIC
3L	1236052	3L_1236052_SNP [dm3] 3L_1236052_SNP [dm6]	C	T	1.183e^-4	0.631	DOWNSTREAM CG33966 & 1 other INTRON CG9194	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	6673200	X_6673200_SNP [dm3] X_6779167_SNP [dm6]	G	A	1.192e^-4	0.631	INTRON shf	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17017861	2R_17017861_SNP [dm3] 2R_21130356_SNP [dm6]	G	A	1.194e^-4	0.631	DOWNSTREAM mago INTRON Magi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21282424	X_21282424_SNP [dm3] X_21411397_SNP [dm6]	C	A	1.195e^-4	0.631	UPSTREAM CR45003 INTERGENIC
3L	14079544	3L_14079544_SNP [dm3] 3L_14086444_SNP [dm6]	C	G	1.195e^-4	0.631	DOWNSTREAM CG8100 INTERGENIC
X	8723004	X_8723004_SNP [dm3] X_8828971_SNP [dm6]	A	C	1.209e^-4	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	16988899	3R_16988899_SNP [dm3] 3R_21163177_SNP [dm6]	T	A	1.210e^-4	0.631	UPSTREAM CG5810 INTRON SNF4Agamma
2R	9385622	2R_9385622_SNP [dm3] 2R_13498117_SNP [dm6]	T	A	1.211e^-4	0.631	INTRON drk
3L	4827031	3L_4827031_SNP [dm3] 3L_4827031_SNP [dm6]	G	A	1.215e^-4	0.631	NON_SYNONYMOUS_CODING Aats-leu	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	26001631	3R_26001631_SNP [dm3] 3R_30175909_SNP [dm6]	T	C	1.222e^-4	0.631	UTR_3_PRIME CG1983 DOWNSTREAM CG1983	regulatory region REDfly_CRMs
3L	2202588	3L_2202588_SNP [dm3] 3L_2202588_SNP [dm6]	A	G	1.222e^-4	0.631	INTERGENIC
2R	12873533	2R_12873533_SNP [dm3] 2R_16986028_SNP [dm6]	A	T	1.232e^-4	0.631	INTRON Cbp53E
3R	22853727	3R_22853727_SNP [dm3] 3R_27028005_SNP [dm6]	A	T	1.234e^-4	0.631	UTR_5_PRIME RYa-R	TF binding site mE1_TFBS_cad
2L	7057433	2L_7057433_SNP [dm3] 2L_7057433_SNP [dm6]	C	T	1.235e^-4	0.631	SYNONYMOUS_CODING Mnn1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10733942	3L_10733942_SNP [dm3] 3L_10740842_SNP [dm6]	G	A	1.236e^-4	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	21133789	2R_21133789_SNP [dm3] 2R_25246266_SNP [dm6]	C	T	1.244e^-4	0.631	UPSTREAM CG30429 INTRON CG9380	TF binding site BDTNP1_TFBS_hb
2R	12873536	2R_12873536_SNP [dm3] 2R_16986031_SNP [dm6]	T	C	1.247e^-4	0.631	INTRON Cbp53E
3R	15208326	3R_15208326_SNP [dm3] 3R_19382604_SNP [dm6]	C	T	1.250e^-4	0.631	INTRON Ino80
2L	8008148	2L_8008148_INS [dm3] 2L_8008148_INS [dm6]	A	TATAAAGATTTTATCACAC...	1.254e^-4	0.631	UPSTREAM Spn28Dc DOWNSTREAM CG12560 INTERGENIC
3L	1046096	3L_1046096_SNP [dm3] 3L_1046096_SNP [dm6]	A	G	1.260e^-4	0.631	INTRON bab1
3L	10418507	3L_10418507_SNP [dm3] 3L_10425407_SNP [dm6]	G	A	1.266e^-4	0.631	INTERGENIC
3L	12175730	3L_12175730_SNP [dm3] 3L_12182630_SNP [dm6]	T	A	1.267e^-4	0.631	SYNONYMOUS_CODING CAH2
3R	26964654	3R_26964654_SNP [dm3] 3R_31138932_SNP [dm6]	A	C	1.277e^-4	0.631	INTRON Gycbeta100B
2R	12176326	2R_12176326_SNP [dm3] 2R_16288821_SNP [dm6]	C	T	1.283e^-4	0.631	NON_SYNONYMOUS_CODING CG30099 UPSTREAM CG30324 & 1 other DOWNSTREAM CR43730	TF binding site mE1_TFBS_cad
3L	611501	3L_611501_SNP [dm3] 3L_611501_SNP [dm6]	C	T	1.284e^-4	0.631	INTERGENIC
2R	9166701	2R_9166701_SNP [dm3] 2R_13279196_SNP [dm6]	G	A	1.284e^-4	0.631	INTRON Dh31-R
2L	12686333	2L_12686333_SNP [dm3] 2L_12686333_SNP [dm6]	G	T	1.295e^-4	0.631	DOWNSTREAM pdm2 INTERGENIC
3L	9717919	3L_9717919_SNP [dm3] 3L_9724819_SNP [dm6]	A	G	1.299e^-4	0.631	SYNONYMOUS_CODING defl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2646601	3L_2646601_SNP [dm3] 3L_2646601_SNP [dm6]	T	C	1.300e^-4	0.631	UTR_3_PRIME CG1143	TF binding site mE1_TFBS_cad
3R	2851138	3R_2851138_SNP [dm3] 3R_7025416_SNP [dm6]	C	T	1.305e^-4	0.631	INTERGENIC
2L	13901183	2L_13901183_SNP [dm3] 2L_13901183_SNP [dm6]	T	A	1.315e^-4	0.631	NON_SYNONYMOUS_CODING Smg5
2R	13687342	2R_13687342_SNP [dm3] 2R_17799837_SNP [dm6]	A	C	1.318e^-4	0.631	UTR_3_PRIME Dhit DOWNSTREAM CR45270	TF binding site BDTNP1_TFBS_dl
2R	16496774	2R_16496774_SNP [dm3] 2R_20609269_SNP [dm6]	G	A	1.322e^-4	0.631	SYNONYMOUS_CODING Hil	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9282473	2L_9282473_SNP [dm3] 2L_9282473_SNP [dm6]	T	G	1.329e^-4	0.631	INTRON Ggamma30A
3L	8870026	3L_8870026_SNP [dm3] 3L_8876926_SNP [dm6]	A	G	1.331e^-4	0.631	INTRON dally
3L	6805135	3L_6805135_SNP [dm3] 3L_6812035_SNP [dm6]	C	T	1.332e^-4	0.631	INTERGENIC
3R	26031934	3R_26031934_SNP [dm3] 3R_30206212_SNP [dm6]	G	C	1.334e^-4	0.631	DOWNSTREAM RpS7 & 3 others INTERGENIC
2L	5467954	2L_5467954_SNP [dm3] 2L_5467954_SNP [dm6]	G	A	1.335e^-4	0.631	DOWNSTREAM mid INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	1408391	3L_1408391_SNP [dm3] 3L_1408391_SNP [dm6]	T	C	1.337e^-4	0.631	INTRON Ptp61F
3R	25201941	3R_25201941_SNP [dm3] 3R_29376219_SNP [dm6]	A	G	1.344e^-4	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	16215223	3L_16215223_SNP [dm3] 3L_16222123_SNP [dm6]	A	G	1.365e^-4	0.631	DOWNSTREAM tRNA:CR32153 INTERGENIC
3L	13714072	3L_13714072_SNP [dm3] 3L_13720972_SNP [dm6]	T	G	1.367e^-4	0.631	INTRON bru-3
3L	10247017	3L_10247017_SNP [dm3] 3L_10253917_SNP [dm6]	T	A	1.374e^-4	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	20218269	X_20218269_SNP [dm3] X_20347242_SNP [dm6]	C	A	1.394e^-4	0.631	INTERGENIC
3L	4089622	3L_4089622_SNP [dm3] 3L_4089622_SNP [dm6]	G	A	1.401e^-4	0.631	UPSTREAM Gad1 INTRON CG14989
3R	19625475	3R_19625475_SNP [dm3] 3R_23799753_SNP [dm6]	T	C	1.401e^-4	0.631	INTRON mbc
3R	22853728	3R_22853728_SNP [dm3] 3R_27028006_SNP [dm6]	C	T	1.406e^-4	0.631	UTR_5_PRIME RYa-R	TF binding site mE1_TFBS_cad
2L	10722609	2L_10722609_SNP [dm3] 2L_10722609_SNP [dm6]	C	G	1.411e^-4	0.631	INTERGENIC
2R	10968583	2R_10968583_SNP [dm3] 2R_15081078_SNP [dm6]	C	T	1.414e^-4	0.631	INTERGENIC	TF binding site mE1_TFBS_inv
2L	21898204	2L_21898204_SNP [dm3] 2L_21898204_SNP [dm6]	G	A	1.416e^-4	0.631	NON_SYNONYMOUS_CODING CG11629	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	13171560	3R_13171560_SNP [dm3] 3R_17345838_SNP [dm6]	G	A	1.426e^-4	0.631	UTR_5_PRIME beat-IIa
3R	2756548	3R_2756548_SNP [dm3] 3R_6930826_SNP [dm6]	A	G	1.433e^-4	0.631	INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	14692581	2R_14692581_SNP [dm3] 2R_18805076_SNP [dm6]	T	A	1.434e^-4	0.631	UPSTREAM CR44468 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	14366853	3L_14366853_SNP [dm3] 3L_14373753_SNP [dm6]	T	A	1.442e^-4	0.631	INTERGENIC
2L	4512951	2L_4512951_SNP [dm3] 2L_4512951_SNP [dm6]	C	T	1.443e^-4	0.631	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3413527	3R_3413527_SNP [dm3] 3R_7587805_SNP [dm6]	C	T	1.449e^-4	0.631	INTRON CG34127	TF binding site mE1_TFBS_inv
2L	21879086	2L_21879086_SNP [dm3] 2L_21879086_SNP [dm6]	C	G	1.456e^-4	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12892399	3L_12892399_SNP [dm3] 3L_12899299_SNP [dm6]	C	T	1.466e^-4	0.631	INTERGENIC
2L	10722604	2L_10722604_SNP [dm3] 2L_10722604_SNP [dm6]	T	C	1.466e^-4	0.631	INTERGENIC
3L	16379475	3L_16379475_SNP [dm3] 3L_16386375_SNP [dm6]	T	C	1.467e^-4	0.631	UTR_5_PRIME RAF2 UPSTREAM CG4729	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	21912065	2L_21912065_SNP [dm3] 2L_21912065_SNP [dm6]	C	T	1.473e^-4	0.631	INTERGENIC	transposable element FlyBase
3L	806506	3L_806506_SNP [dm3] 3L_806506_SNP [dm6]	T	A	1.481e^-4	0.631	INTERGENIC
2R	14184383	2R_14184383_SNP [dm3] 2R_18296878_SNP [dm6]	A	T	1.482e^-4	0.631	UPSTREAM CG18538 & 1 other DOWNSTREAM CG18537 INTRON sbb
2L	6405120	2L_6405120_SNP [dm3] 2L_6405120_SNP [dm6]	T	C	1.483e^-4	0.631	INTRON CG42368
3R	25285606	3R_25285606_SNP [dm3] 3R_29459884_SNP [dm6]	C	T	1.489e^-4	0.631	UPSTREAM CR44022 INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	15701005	3L_15701005_SNP [dm3] 3L_15707905_SNP [dm6]	A	T	1.490e^-4	0.631	INTERGENIC
3L	17956177	3L_17956177_SNP [dm3] 3L_17963077_SNP [dm6]	G	C	1.492e^-4	0.631	INTRON Eip75B	TF binding site mE1_TFBS_Trl
3L	4846361	3L_4846361_SNP [dm3] 3L_4846361_SNP [dm6]	G	A	1.499e^-4	0.631	INTERGENIC
2L	21916293	2L_21916293_SNP [dm3] 2L_21916293_SNP [dm6]	A	T	1.500e^-4	0.631	UPSTREAM CG11634 & 1 other INTERGENIC
2R	19409961	2R_19409961_SNP [dm3] 2R_23522438_SNP [dm6]	C	A	1.501e^-4	0.631	INTRON RabX1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	513407	3R_513407_SNP [dm3] 3R_4687685_SNP [dm6]	T	C	1.502e^-4	0.631	INTRON CG43427
2L	7514746	2L_7514746_SNP [dm3] 2L_7514746_SNP [dm6]	A	G	1.512e^-4	0.631	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	13803068	2R_13803068_SNP [dm3] 2R_17915563_SNP [dm6]	G	A	1.512e^-4	0.631	INTRON Elk
3R	11585531	3R_11585531_INS [dm3] 3R_15759809_INS [dm6]	A	AATCCCCCA	1.515e^-4	0.631	INTERGENIC
2L	8075623	2L_8075623_SNP [dm3] 2L_8075623_SNP [dm6]	T	C	1.517e^-4	0.631	INTRON Mcr
3R	19479467	3R_19479467_SNP [dm3] 3R_23653745_SNP [dm6]	G	C	1.520e^-4	0.631	UTR_5_PRIME CG31145
3L	14236650	3L_14236650_SNP [dm3] 3L_14243550_SNP [dm6]	A	G	1.521e^-4	0.631	INTERGENIC
3L	16551309	3L_16551309_SNP [dm3] 3L_16558209_SNP [dm6]	T	A	1.528e^-4	0.631	DOWNSTREAM CG4229 INTERGENIC
3L	18199281	3L_18199281_SNP [dm3] 3L_18206181_SNP [dm6]	C	A	1.529e^-4	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	16361074	2R_16361074_SNP [dm3] 2R_20473569_SNP [dm6]	C	T	1.533e^-4	0.631	INTRON CG12484
2R	16361091	2R_16361091_SNP [dm3] 2R_20473586_SNP [dm6]	A	C	1.533e^-4	0.631	INTRON CG12484
3L	17114489	3L_17114489_SNP [dm3] 3L_17121389_SNP [dm6]	A	T	1.537e^-4	0.631	INTRON Rbp6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_inv
2R	15866597	2R_15866597_SNP [dm3] 2R_19979092_SNP [dm6]	G	A	1.538e^-4	0.631	UPSTREAM CG8654 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11350522	2R_11350522_SNP [dm3] 2R_15463017_SNP [dm6]	G	T	1.546e^-4	0.631	INTRON CG43729
3R	10136900	3R_10136900_SNP [dm3] 3R_14311178_SNP [dm6]	G	T	1.546e^-4	0.631	DOWNSTREAM RpII15 INTRON CG31321
2R	17018415	2R_17018415_SNP [dm3] 2R_21130910_SNP [dm6]	G	A	1.549e^-4	0.631	SYNONYMOUS_CODING Magi	TF binding site mE1_TFBS_chinmo
2R	17482389	2R_17482389_SNP [dm3] 2R_21594884_SNP [dm6]	C	A	1.549e^-4	0.631	INTERGENIC	TF binding site mE1_TFBS_cad
3L	3282181	3L_3282181_SNP [dm3] 3L_3282181_SNP [dm6]	T	G	1.551e^-4	0.631	INTRON CG12017
3L	4089697	3L_4089697_SNP [dm3] 3L_4089697_SNP [dm6]	A	T	1.551e^-4	0.631	UPSTREAM Gad1 INTRON CG14989
2L	16076142	2L_16076142_SNP [dm3] 2L_16076142_SNP [dm6]	A	G	1.564e^-4	0.631	INTRON beat-Ia
3L	10731928	3L_10731928_SNP [dm3] 3L_10738828_SNP [dm6]	G	T	1.566e^-4	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	13259637	3L_13259637_SNP [dm3] 3L_13266537_SNP [dm6]	A	C	1.569e^-4	0.631	INTRON caps
3L	6904050	3L_6904050_SNP [dm3] 3L_6910950_SNP [dm6]	A	G	1.569e^-4	0.631	INTERGENIC
3L	16309126	3L_16309126_INS [dm3] 3L_16316026_INS [dm6]	T	TT	1.572e^-4	0.631	DOWNSTREAM CG13062 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5520448	2L_5520448_SNP [dm3] 2L_5520448_SNP [dm6]	G	A	1.575e^-4	0.631	SYNONYMOUS_CODING cl UPSTREAM CG7382 DOWNSTREAM CG7371	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Ubx
2L	5520496	2L_5520496_SNP [dm3] 2L_5520496_SNP [dm6]	T	C	1.575e^-4	0.631	SYNONYMOUS_CODING cl UPSTREAM CG7382 DOWNSTREAM CG7371	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Ubx
X	2568102	X_2568102_SNP [dm3] X_2674069_SNP [dm6]	T	G	1.575e^-4	0.631	UTR_3_PRIME sgg INTRON sgg
2L	16076890	2L_16076890_SNP [dm3] 2L_16076890_SNP [dm6]	A	T	1.577e^-4	0.631	INTRON beat-Ia
2R	16866650	2R_16866650_SNP [dm3] 2R_20979145_SNP [dm6]	A	T	1.579e^-4	0.631	START_GAINED CG9313 UTR_5_PRIME CG9313 UPSTREAM CG15650 & 1 other
3L	8316065	3L_8316065_SNP [dm3] 3L_8322965_SNP [dm6]	G	A	1.585e^-4	0.631	DOWNSTREAM CG13670 INTERGENIC
3L	9715826	3L_9715826_SNP [dm3] 3L_9722726_SNP [dm6]	A	G	1.586e^-4	0.631	SYNONYMOUS_CODING nbs UPSTREAM defl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	3253101	3R_3253101_INS [dm3] 3R_7427379_INS [dm6]	T	TACGTTAAATTTAAT...	1.592e^-4	0.631	INTERGENIC
3R	11590987	3R_11590987_SNP [dm3] 3R_15765265_SNP [dm6]	T	G	1.596e^-4	0.631	DOWNSTREAM CG5623 INTERGENIC
2L	16083300	2L_16083300_SNP [dm3] 2L_16083300_SNP [dm6]	A	T	1.597e^-4	0.631	INTERGENIC
2R	15923630	2R_15923630_SNP [dm3] 2R_20036125_SNP [dm6]	A	C	1.606e^-4	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4307627	2L_4307627_SNP [dm3] 2L_4307627_SNP [dm6]	T	C	1.609e^-4	0.631	SYNONYMOUS_CODING tutl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	12805776	2L_12805776_SNP [dm3] 2L_12805776_SNP [dm6]	T	G	1.618e^-4	0.631	INTERGENIC
2L	4513174	2L_4513174_SNP [dm3] 2L_4513174_SNP [dm6]	G	A	1.621e^-4	0.631	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12937534	X_12937534_SNP [dm3] X_13043501_SNP [dm6]	A	C	1.623e^-4	0.631	INTRON rad
2R	7146622	2R_7146622_SNP [dm3] 2R_11259117_SNP [dm6]	G	T	1.626e^-4	0.631	UTR_3_PRIME Cpr47Ec DOWNSTREAM CG13223
2L	11881876	2L_11881876_SNP [dm3] 2L_11881876_SNP [dm6]	T	C	1.627e^-4	0.631	INTRON Pde1c
X	3403547	X_3403547_SNP [dm3] X_3509514_SNP [dm6]	T	A	1.628e^-4	0.631	UTR_3_PRIME CG32791 INTRON CR44999
2R	15394517	2R_15394517_SNP [dm3] 2R_19507012_SNP [dm6]	A	G	1.631e^-4	0.631	UPSTREAM tRNA:H:56E INTERGENIC
2L	21802210	2L_21802210_SNP [dm3] 2L_21802210_SNP [dm6]	G	A	1.633e^-4	0.631	INTERGENIC
3R	16989113	3R_16989113_SNP [dm3] 3R_21163391_SNP [dm6]	A	G	1.648e^-4	0.631	UPSTREAM CG5810 INTRON SNF4Agamma
3L	9322863	3L_9322863_SNP [dm3] 3L_9329763_SNP [dm6]	T	A	1.651e^-4	0.631	INTERGENIC
2L	4787679	2L_4787679_SNP [dm3] 2L_4787679_SNP [dm6]	T	A	1.656e^-4	0.631	INTRON CG15630
3L	13426405	3L_13426405_SNP [dm3] 3L_13433305_SNP [dm6]	A	C	1.657e^-4	0.631	DOWNSTREAM tRNA:V4:70BCa & 1 other INTRON CG10713
3L	17955261	3L_17955261_SNP [dm3] 3L_17962161_SNP [dm6]	C	T	1.665e^-4	0.631	UPSTREAM Eip75B INTRON Eip75B	TF binding site mE1_TFBS_Trl
3L	11154982	3L_11154982_SNP [dm3] 3L_11161882_SNP [dm6]	A	T	1.673e^-4	0.631	NON_SYNONYMOUS_CODING CG32082 INTRON CG32082	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14300234	X_14300234_SNP [dm3] X_14406201_SNP [dm6]	C	T	1.679e^-4	0.631	INTRON dpr8
3L	1025138	3L_1025138_SNP [dm3] 3L_1025138_SNP [dm6]	C	G	1.680e^-4	0.631	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16724467	3L_16724467_SNP [dm3] 3L_16731367_SNP [dm6]	G	A	1.680e^-4	0.631	UPSTREAM Dbp73D INTERGENIC	TF binding site mE1_TFBS_HSA
2R	14567225	2R_14567225_SNP [dm3] 2R_18679720_SNP [dm6]	C	G	1.683e^-4	0.631	NON_SYNONYMOUS_CODING CG44435 UTR_3_PRIME CG44434	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_sens
2L	14357378	2L_14357378_SNP [dm3] 2L_14357378_SNP [dm6]	T	C	1.684e^-4	0.631	SYNONYMOUS_CODING Rab14 UPSTREAM CR44851
3L	1646793	3L_1646793_SNP [dm3] 3L_1646793_SNP [dm6]	G	A	1.685e^-4	0.631	NON_SYNONYMOUS_CODING CG17249 DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16543983	2R_16543983_SNP [dm3] 2R_20656478_SNP [dm6]	C	A	1.687e^-4	0.631	NON_SYNONYMOUS_CODING CG11159 INTRON Lrt	TF binding site mE1_TFBS_cad
3L	10877325	3L_10877325_SNP [dm3] 3L_10884225_SNP [dm6]	C	A	1.687e^-4	0.631	DOWNSTREAM CG6404 & 1 other INTERGENIC
3L	17955272	3L_17955272_SNP [dm3] 3L_17962172_SNP [dm6]	T	C	1.703e^-4	0.631	UPSTREAM Eip75B INTRON Eip75B	TF binding site mE1_TFBS_Trl
3R	446388	3R_446388_SNP [dm3] 3R_4620666_SNP [dm6]	A	G	1.704e^-4	0.631	INTRON 5-HT2A
3L	1248224	3L_1248224_SNP [dm3] 3L_1248224_SNP [dm6]	C	T	1.708e^-4	0.631	UPSTREAM Psf1 INTRON Sac1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11809300	3L_11809300_SNP [dm3] 3L_11816200_SNP [dm6]	G	A	1.709e^-4	0.631	SYNONYMOUS_CODING CG14130 DOWNSTREAM CG5946	TF binding site mE1_TFBS_sens
2R	16592933	2R_16592933_INS [dm3] 2R_20705428_INS [dm6]	C	CCAAC	1.709e^-4	0.631	INTRON dpr
2R	14021005	2R_14021005_SNP [dm3] 2R_18133500_SNP [dm6]	A	G	1.711e^-4	0.631	INTRON Hsf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	10969338	2R_10969338_SNP [dm3] 2R_15081833_SNP [dm6]	T	G	1.715e^-4	0.631	INTERGENIC	TF binding site mE1_TFBS_inv
3L	1561176	3L_1561176_SNP [dm3] 3L_1561176_SNP [dm6]	C	T	1.717e^-4	0.631	SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	8006887	2L_8006887_SNP [dm3] 2L_8006887_SNP [dm6]	G	T	1.717e^-4	0.631	SYNONYMOUS_CODING Spn28Dc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21852321	2L_21852321_SNP [dm3] 2L_21852321_SNP [dm6]	A	G	1.728e^-4	0.631	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	21119975	2R_21119975_INS [dm3] 2R_25232452_INS [dm6]	A	AT	1.734e^-4	0.631	INTRON CG9380	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7418262	2R_7418262_SNP [dm3] 2R_11530757_SNP [dm6]	G	A	1.736e^-4	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	4152861	3L_4152861_SNP [dm3] 3L_4152861_SNP [dm6]	G	A	1.741e^-4	0.631	DOWNSTREAM CG1299 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27129280	3R_27129280_SNP [dm3] 3R_31303558_SNP [dm6]	A	G	1.743e^-4	0.631	SYNONYMOUS_CODING CG11340	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26050343	3R_26050343_SNP [dm3] 3R_30224621_SNP [dm6]	G	T	1.763e^-4	0.631	INTERGENIC
3L	18197536	3L_18197536_SNP [dm3] 3L_18204436_SNP [dm6]	T	C	1.771e^-4	0.631	DOWNSTREAM CG7320 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
2L	21852316	2L_21852316_SNP [dm3] 2L_21852316_SNP [dm6]	T	A	1.772e^-4	0.631	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18129421	3R_18129421_SNP [dm3] 3R_22303699_SNP [dm6]	T	G	1.776e^-4	0.631	UTR_3_PRIME CG7084
3R	6929028	3R_6929028_SNP [dm3] 3R_11103306_SNP [dm6]	T	A	1.776e^-4	0.631	INTERGENIC
2L	1066451	2L_1066451_SNP [dm3] 2L_1066451_SNP [dm6]	T	C	1.777e^-4	0.631	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	16105423	2L_16105423_SNP [dm3] 2L_16105423_SNP [dm6]	T	C	1.778e^-4	0.631	INTERGENIC
2L	12274966	2L_12274966_SNP [dm3] 2L_12274966_SNP [dm6]	G	T	1.786e^-4	0.631	INTRON aret
2L	12807605	2L_12807605_SNP [dm3] 2L_12807605_SNP [dm6]	T	A	1.789e^-4	0.631	DOWNSTREAM CR43818 INTERGENIC
3L	3282444	3L_3282444_SNP [dm3] 3L_3282444_SNP [dm6]	C	T	1.790e^-4	0.631	INTRON CG12017
3R	14150728	3R_14150728_SNP [dm3] 3R_18325006_SNP [dm6]	A	T	1.794e^-4	0.631	INTRON CG31235
3R	12954762	3R_12954762_SNP [dm3] 3R_17129040_SNP [dm6]	C	T	1.795e^-4	0.631	SYNONYMOUS_CODING CG31265 DOWNSTREAM CG31269 & 1 other
3R	14980519	3R_14980519_SNP [dm3] 3R_19154797_SNP [dm6]	G	T	1.800e^-4	0.631	UTR_3_PRIME CG11779
3L	1648273	3L_1648273_SNP [dm3] 3L_1648273_SNP [dm6]	G	T	1.807e^-4	0.631	SYNONYMOUS_CODING Bro UPSTREAM CG17249 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4787663	2L_4787663_SNP [dm3] 2L_4787663_SNP [dm6]	A	T	1.811e^-4	0.631	INTRON CG15630
3L	10996793	3L_10996793_SNP [dm3] 3L_11003693_SNP [dm6]	T	C	1.814e^-4	0.631	INTRON klu
3R	16989117	3R_16989117_SNP [dm3] 3R_21163395_SNP [dm6]	A	T	1.814e^-4	0.631	UPSTREAM CG5810 INTRON SNF4Agamma
2L	12293941	2L_12293941_SNP [dm3] 2L_12293941_SNP [dm6]	T	C	1.820e^-4	0.631	INTRON aret
3L	8549971	3L_8549971_SNP [dm3] 3L_8556871_SNP [dm6]	C	A	1.821e^-4	0.631	INTRON rhea	TF binding site BDTNP1_TFBS_dl
3L	9739617	3L_9739617_SNP [dm3] 3L_9746517_SNP [dm6]	T	C	1.832e^-4	0.631	INTRON CG42268
3R	7339379	3R_7339379_SNP [dm3] 3R_11513657_SNP [dm6]	C	T	1.841e^-4	0.631	INTERGENIC
3L	2291243	3L_2291243_SNP [dm3] 3L_2291243_SNP [dm6]	T	C	1.843e^-4	0.631	INTRON MsR2
3R	15194882	3R_15194882_SNP [dm3] 3R_19369160_SNP [dm6]	T	A	1.846e^-4	0.631	UTR_3_PRIME Ino80
2L	12079481	2L_12079481_DEL [dm3] 2L_12079481_DEL [dm6]	TTT	C	1.848e^-4	0.631	UPSTREAM CR44591 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	1075849	X_1075849_INS [dm3] X_1181816_INS [dm6]	C	CC	1.850e^-4	0.631	UPSTREAM CG14627 DOWNSTREAM CG11379 INTRON CG14627	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	5634902	3L_5634902_SNP [dm3] 3L_5641802_SNP [dm6]	C	T	1.850e^-4	0.631	UPSTREAM Blimp-1 INTRON Blimp-1
X	3022762	X_3022762_SNP [dm3] X_3128729_SNP [dm6]	G	A	1.855e^-4	0.631	UTR_5_PRIME kirre INTRON kirre
X	2926031	X_2926031_SNP [dm3] X_3031998_SNP [dm6]	C	A	1.859e^-4	0.631	INTRON kirre
2R	19779001	2R_19779001_SNP [dm3] 2R_23891478_SNP [dm6]	G	T	1.860e^-4	0.631	SYNONYMOUS_CODING DNA-ligI	TF binding site mE1_TFBS_sens
2R	14023403	2R_14023403_SNP [dm3] 2R_18135898_SNP [dm6]	G	C	1.865e^-4	0.631	UTR_5_PRIME Pcl	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	19122982	2L_19122982_SNP [dm3] 2L_19122982_SNP [dm6]	A	G	1.866e^-4	0.631	INTRON l_2_37Cc	regulatory region REDfly_CRMs
2L	19122992	2L_19122992_SNP [dm3] 2L_19122992_SNP [dm6]	A	T	1.866e^-4	0.631	INTRON l_2_37Cc	regulatory region REDfly_CRMs
3R	4825559	3R_4825559_SNP [dm3] 3R_8999837_SNP [dm6]	A	C	1.870e^-4	0.631	INTRON CG31100
2L	3433429	2L_3433429_SNP [dm3] 2L_3433429_SNP [dm6]	T	C	1.871e^-4	0.631	INTERGENIC
2R	10862926	2R_10862926_SNP [dm3] 2R_14975421_SNP [dm6]	C	T	1.875e^-4	0.631	UPSTREAM ckn INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13069147	3L_13069147_SNP [dm3] 3L_13076047_SNP [dm6]	T	G	1.888e^-4	0.631	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da
3L	19007496	3L_19007496_SNP [dm3] 3L_19014396_SNP [dm6]	T	C	1.897e^-4	0.631	INTRON nkd
3L	18199304	3L_18199304_SNP [dm3] 3L_18206204_SNP [dm6]	C	T	1.897e^-4	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	7138280	3L_7138280_SNP [dm3] 3L_7145180_SNP [dm6]	G	A	1.900e^-4	0.631	SPLICE_SITE_REGION corn INTRON corn
3L	7138294	3L_7138294_SNP [dm3] 3L_7145194_SNP [dm6]	G	C	1.900e^-4	0.631	INTRON corn
2L	21916269	2L_21916269_INS [dm3] 2L_21916269_INS [dm6]	A	AA	1.901e^-4	0.631	UPSTREAM CG11634 & 1 other INTERGENIC
3L	3529986	3L_3529986_SNP [dm3] 3L_3529986_SNP [dm6]	C	T	1.902e^-4	0.631	INTRON Eip63E
2L	11023847	2L_11023847_SNP [dm3] 2L_11023847_SNP [dm6]	T	G	1.904e^-4	0.631	INTRON Samuel	TF binding site mE1_TFBS_cad
3L	13069066	3L_13069066_SNP [dm3] 3L_13075966_SNP [dm6]	A	T	1.904e^-4	0.631	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da
3L	20851428	3L_20851428_SNP [dm3] 3L_20858328_SNP [dm6]	C	T	1.905e^-4	0.631	INTRON CG32432
2L	12698365	2L_12698365_SNP [dm3] 2L_12698365_SNP [dm6]	A	T	1.906e^-4	0.631	SYNONYMOUS_CODING PICK1 DOWNSTREAM CG17036	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11809325	3L_11809325_SNP [dm3] 3L_11816225_SNP [dm6]	G	T	1.908e^-4	0.631	NON_SYNONYMOUS_CODING CG14130 DOWNSTREAM CG5946	TF binding site mE1_TFBS_sens
2L	13471305	2L_13471305_SNP [dm3] 2L_13471305_SNP [dm6]	C	T	1.918e^-4	0.631	INTRON CG42784
2L	4027493	2L_4027493_SNP [dm3] 2L_4027493_SNP [dm6]	C	T	1.922e^-4	0.631	INTERGENIC
2R	11081408	2R_11081408_SNP [dm3] 2R_15193903_SNP [dm6]	C	G	1.922e^-4	0.631	UPSTREAM Sfp51E DOWNSTREAM CG43829 INTERGENIC
3L	7960114	3L_7960114_SNP [dm3] 3L_7967014_SNP [dm6]	A	G	1.927e^-4	0.631	INTERGENIC	TF binding site mE1_TFBS_cad
3R	21900436	3R_21900436_SNP [dm3] 3R_26074714_SNP [dm6]	A	G	1.930e^-4	0.631	INTERGENIC
2L	13471951	2L_13471951_SNP [dm3] 2L_13471951_SNP [dm6]	C	T	1.936e^-4	0.631	INTRON CG42784
3L	2428513	3L_2428513_SNP [dm3] 3L_2428513_SNP [dm6]	C	G	1.941e^-4	0.631	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	19778931	2R_19778931_SNP [dm3] 2R_23891408_SNP [dm6]	C	T	1.944e^-4	0.631	NON_SYNONYMOUS_CODING DNA-ligI	TF binding site mE1_TFBS_sens
X	5056508	X_5056508_SNP [dm3] X_5162475_SNP [dm6]	A	G	1.949e^-4	0.631	INTRON rg & 1 other
3R	13940021	3R_13940021_SNP [dm3] 3R_18114299_SNP [dm6]	A	C	1.950e^-4	0.631	INTRON sr
2L	22434370	2L_22434370_SNP [dm3] 2L_22541638_SNP [dm6]	G	A	1.951e^-4	0.631	DOWNSTREAM CG17490 INTRON CG17490
3L	781286	3L_781286_SNP [dm3] 3L_781286_SNP [dm6]	T	A	1.957e^-4	0.631	INTERGENIC
2R	19409956	2R_19409956_DEL [dm3] 2R_23522433_DEL [dm6]	GA	G	1.959e^-4	0.631	INTRON RabX1	TF binding site BDTNP1_TFBS_dl
X	20960226	X_20960226_DEL [dm3] X_21089199_DEL [dm6]	TCAATATCCCAGCGACAAAC...	T	1.959e^-4	0.631	INTERGENIC
3L	15307322	3L_15307322_SNP [dm3] 3L_15314222_SNP [dm6]	C	T	1.967e^-4	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	7409851	2R_7409851_SNP [dm3] 2R_11522346_SNP [dm6]	T	C	1.970e^-4	0.631	INTERGENIC
3R	12008827	3R_12008827_DEL [dm3] 3R_16183105_DEL [dm6]	AA	A	1.971e^-4	0.631	INTRON CG8927
X	19018938	X_19018938_SNP [dm3] X_19124905_SNP [dm6]	A	G	1.973e^-4	0.631	UPSTREAM CG15882 DOWNSTREAM tgy INTERGENIC
3L	9711151	3L_9711151_SNP [dm3] 3L_9718051_SNP [dm6]	T	G	1.981e^-4	0.631	SYNONYMOUS_CODING CG18178 DOWNSTREAM vsg
3L	14236642	3L_14236642_SNP [dm3] 3L_14243542_SNP [dm6]	A	T	1.982e^-4	0.631	INTERGENIC
3R	19458939	3R_19458939_SNP [dm3] 3R_23633217_SNP [dm6]	A	C	1.982e^-4	0.631	INTRON CG31145	TF binding site BDTNP1_TFBS_twi
2L	8436501	2L_8436501_SNP [dm3] 2L_8436501_SNP [dm6]	C	T	1.983e^-4	0.631	SYNONYMOUS_CODING D12 UPSTREAM Chrac-14	TF binding site mE1_TFBS_sens
3R	24424994	3R_24424994_SNP [dm3] 3R_28599272_SNP [dm6]	T	C	1.983e^-4	0.631	UTR_5_PRIME Noa36 UPSTREAM Hrb98DE	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx
3R	26963840	3R_26963840_INS [dm3] 3R_31138118_INS [dm6]	A	AA	1.984e^-4	0.631	INTRON Gycbeta100B
2R	14992431	2R_14992431_SNP [dm3] 2R_19104926_SNP [dm6]	A	T	1.987e^-4	0.631	INTRON 5-HT1A
3R	26692087	3R_26692087_SNP [dm3] 3R_30866365_SNP [dm6]	C	T	1.995e^-4	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	7352146	2R_7352146_SNP [dm3] 2R_11464641_SNP [dm6]	C	G	1.995e^-4	0.631	UTR_3_PRIME E_Pc_ DOWNSTREAM E_Pc_
X	19362341	X_19362341_SNP [dm3] X_19468308_SNP [dm6]	G	T	1.997e^-4	0.631	SPLICE_SITE_REGION kek5 SYNONYMOUS_CODING kek5	TF binding site mE1_TFBS_chinmo
2R	3956647	2R_3956647_SNP [dm3] 2R_8069142_SNP [dm6]	C	T	1.999e^-4	0.631	UPSTREAM lig INTRON lig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	26050312	3R_26050312_DEL [dm3] 3R_30224590_DEL [dm6]	AACAAAAGGTA...	A	1.999e^-4	0.631	INTERGENIC
3R	26050329	3R_26050329_DEL [dm3] 3R_30224607_DEL [dm6]	CAACACCTATC...	A	1.999e^-4	0.631	INTERGENIC
3R	26050344	3R_26050344_DEL [dm3] 3R_30224622_DEL [dm6]	TCTCG	T	1.999e^-4	0.631	INTERGENIC
3R	26050353	3R_26050353_MNP [dm3] 3R_30224631_MNP [dm6]	TTC	AGT	1.999e^-4	0.631	INTERGENIC
3R	26050357	3R_26050357_SNP [dm3] 3R_30224635_SNP [dm6]	G	A	1.999e^-4	0.631	INTERGENIC
3R	26050435	3R_26050435_SNP [dm3] 3R_30224713_SNP [dm6]	A	G	1.999e^-4	0.631	INTERGENIC
3L	17955197	3L_17955197_SNP [dm3] 3L_17962097_SNP [dm6]	A	T	2.001e^-4	0.631	UPSTREAM Eip75B INTRON Eip75B
3L	17955255	3L_17955255_SNP [dm3] 3L_17962155_SNP [dm6]	T	C	2.001e^-4	0.631	UPSTREAM Eip75B INTRON Eip75B	TF binding site mE1_TFBS_Trl
3R	13570452	3R_13570452_SNP [dm3] 3R_17744730_SNP [dm6]	C	T	2.007e^-4	0.631	INTRON TyrRII
3R	18024421	3R_18024421_SNP [dm3] 3R_22198699_SNP [dm6]	G	C	2.007e^-4	0.631	INTRON SKIP & 1 other
2R	2016468	2R_2016468_SNP [dm3] 2R_6128963_SNP [dm6]	C	T	2.026e^-4	0.631	INTRON EcR
3L	1645303	3L_1645303_SNP [dm3] 3L_1645303_SNP [dm6]	A	T	2.033e^-4	0.631	UPSTREAM CG13919 & 1 other DOWNSTREAM CG17249 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5192718	3L_5192718_SNP [dm3] 3L_5199618_SNP [dm6]	T	C	2.035e^-4	0.631	INTRON shep
2R	19230674	2R_19230674_SNP [dm3] 2R_23343151_SNP [dm6]	A	T	2.036e^-4	0.631	DOWNSTREAM CG3502 INTERGENIC	TF binding site mE1_TFBS_cad
3R	21357231	3R_21357231_SNP [dm3] 3R_25531509_SNP [dm6]	G	A	2.038e^-4	0.631	INTRON msi
3L	18372906	3L_18372906_MNP [dm3] 3L_18379806_MNP [dm6]	GGAGT	TTCAA	2.040e^-4	0.631	INTERGENIC
3L	18372917	3L_18372917_SNP [dm3] 3L_18379817_SNP [dm6]	T	A	2.040e^-4	0.631	INTERGENIC
2R	17017823	2R_17017823_SNP [dm3] 2R_21130318_SNP [dm6]	T	G	2.042e^-4	0.631	DOWNSTREAM mago INTRON Magi	TF binding site mE1_TFBS_sens
X	5367529	X_5367529_SNP [dm3] X_5473496_SNP [dm6]	G	A	2.054e^-4	0.631	INTRON SPR
3L	18638048	3L_18638048_SNP [dm3] 3L_18644948_SNP [dm6]	C	A	2.056e^-4	0.631	INTRON MYPT-75D
3R	26704960	3R_26704960_SNP [dm3] 3R_30879238_SNP [dm6]	G	A	2.057e^-4	0.631	SYNONYMOUS_CODING CG12071	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12878915	2L_12878915_SNP [dm3] 2L_12878915_SNP [dm6]	T	A	2.061e^-4	0.631	INTERGENIC
X	19018444	X_19018444_SNP [dm3] X_19124411_SNP [dm6]	G	A	2.062e^-4	0.631	UPSTREAM CG15882 DOWNSTREAM tgy INTERGENIC
2L	11023850	2L_11023850_SNP [dm3] 2L_11023850_SNP [dm6]	G	T	2.065e^-4	0.631	INTRON Samuel	TF binding site mE1_TFBS_cad
3L	14236443	3L_14236443_SNP [dm3] 3L_14243343_SNP [dm6]	C	T	2.075e^-4	0.631	INTERGENIC
X	19018889	X_19018889_SNP [dm3] X_19124856_SNP [dm6]	T	A	2.078e^-4	0.631	UPSTREAM CG15882 DOWNSTREAM tgy INTERGENIC
X	19018427	X_19018427_SNP [dm3] X_19124394_SNP [dm6]	A	G	2.086e^-4	0.631	UPSTREAM CG15882 DOWNSTREAM tgy INTERGENIC
X	19018399	X_19018399_SNP [dm3] X_19124366_SNP [dm6]	C	T	2.086e^-4	0.631	UTR_5_PRIME CG15882 DOWNSTREAM tgy
3R	24425649	3R_24425649_SNP [dm3] 3R_28599927_SNP [dm6]	G	T	2.093e^-4	0.631	UTR_5_PRIME Hrb98DE UPSTREAM Noa36 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	7416962	2R_7416962_SNP [dm3] 2R_11529457_SNP [dm6]	A	T	2.097e^-4	0.631	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	15925420	2R_15925420_SNP [dm3] 2R_20037915_SNP [dm6]	T	A	2.113e^-4	0.631	INTERGENIC
2R	14450344	2R_14450344_SNP [dm3] 2R_18562839_SNP [dm6]	C	T	2.117e^-4	0.631	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6559604	2R_6559604_SNP [dm3] 2R_10672099_SNP [dm6]	C	A	2.118e^-4	0.631	INTERGENIC	TF binding site mE1_TFBS_sens
2L	13692743	2L_13692743_SNP [dm3] 2L_13692743_SNP [dm6]	T	C	2.118e^-4	0.631	INTRON CG31814
2R	9220916	2R_9220916_SNP [dm3] 2R_13333411_SNP [dm6]	T	C	2.121e^-4	0.631	INTRON CR44206	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21916487	2L_21916487_SNP [dm3] 2L_21916487_SNP [dm6]	T	A	2.124e^-4	0.631	NON_SYNONYMOUS_CODING CG11634
2R	16234386	2R_16234386_SNP [dm3] 2R_20346881_SNP [dm6]	C	A	2.128e^-4	0.631	UPSTREAM CG16741 DOWNSTREAM CG13870 INTERGENIC
2L	21893499	2L_21893499_SNP [dm3] 2L_21893499_SNP [dm6]	G	A	2.132e^-4	0.631	UPSTREAM CR43762 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	5367118	X_5367118_SNP [dm3] X_5473085_SNP [dm6]	A	G	2.140e^-4	0.631	INTRON SPR
2L	4795688	2L_4795688_SNP [dm3] 2L_4795688_SNP [dm6]	T	A	2.150e^-4	0.631	DOWNSTREAM Clect27 INTRON CG3294
3L	9735810	3L_9735810_SNP [dm3] 3L_9742710_SNP [dm6]	C	A	2.152e^-4	0.631	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	19018459	X_19018459_SNP [dm3] X_19124426_SNP [dm6]	T	C	2.155e^-4	0.631	UPSTREAM CG15882 DOWNSTREAM tgy INTERGENIC
3L	4812846	3L_4812846_SNP [dm3] 3L_4812846_SNP [dm6]	A	G	2.156e^-4	0.631	INTRON Dhc64C
3R	14531336	3R_14531336_SNP [dm3] 3R_18705614_SNP [dm6]	T	C	2.162e^-4	0.631	UTR_5_PRIME Cha & 1 other
2L	18353658	2L_18353658_SNP [dm3] 2L_18353658_SNP [dm6]	A	T	2.166e^-4	0.631	INTRON Fas3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	13570378	3R_13570378_SNP [dm3] 3R_17744656_SNP [dm6]	G	C	2.168e^-4	0.631	INTRON TyrRII	TF binding site mE1_TFBS_cad
2L	8629683	2L_8629683_SNP [dm3] 2L_8629683_SNP [dm6]	T	C	2.170e^-4	0.631	INTRON Sema-1a
2L	3520020	2L_3520020_SNP [dm3] 2L_3520020_SNP [dm6]	C	T	2.176e^-4	0.631	UPSTREAM CG8851 & 1 other INTRON CG8851
X	5367634	X_5367634_SNP [dm3] X_5473601_SNP [dm6]	T	C	2.179e^-4	0.631	INTRON SPR
3R	15967948	3R_15967948_SNP [dm3] 3R_20142226_SNP [dm6]	A	G	2.181e^-4	0.631	INTERGENIC
X	19018280	X_19018280_SNP [dm3] X_19124247_SNP [dm6]	A	T	2.188e^-4	0.631	NON_SYNONYMOUS_CODING CG15882 DOWNSTREAM tgy
2R	10344070	2R_10344070_SNP [dm3] 2R_14456565_SNP [dm6]	G	C	2.189e^-4	0.631	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4351864	X_4351864_SNP [dm3] X_4457831_SNP [dm6]	G	A	2.193e^-4	0.631	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_da
3L	13426412	3L_13426412_SNP [dm3] 3L_13433312_SNP [dm6]	C	T	2.194e^-4	0.631	DOWNSTREAM tRNA:V4:70BCa & 1 other INTRON CG10713
3R	13588778	3R_13588778_SNP [dm3] 3R_17763056_SNP [dm6]	C	A	2.203e^-4	0.631	START_GAINED TyrR UTR_5_PRIME TyrR UPSTREAM TyrR
2L	21907066	2L_21907066_SNP [dm3] 2L_21907066_SNP [dm6]	G	A	2.204e^-4	0.631	SYNONYMOUS_CODING CG1428	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	11148104	3L_11148104_SNP [dm3] 3L_11155004_SNP [dm6]	A	G	2.205e^-4	0.631	INTRON CG32082
X	3381344	X_3381344_SNP [dm3] X_3487311_SNP [dm6]	T	C	2.207e^-4	0.631	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_sens
2R	20726625	2R_20726625_SNP [dm3] 2R_24839102_SNP [dm6]	C	A	2.208e^-4	0.631	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_inv
3L	18994463	3L_18994463_SNP [dm3] 3L_19001363_SNP [dm6]	G	C	2.209e^-4	0.631	NON_SYNONYMOUS_CODING CG18136 UPSTREAM CG3808
3R	6927240	3R_6927240_SNP [dm3] 3R_11101518_SNP [dm6]	C	T	2.211e^-4	0.631	EXON CR45579
2R	5215129	2R_5215129_SNP [dm3] 2R_9327624_SNP [dm6]	A	G	2.217e^-4	0.631	INTRON CG13954 & 1 other
X	19018948	X_19018948_SNP [dm3] X_19124915_SNP [dm6]	A	G	2.219e^-4	0.631	UPSTREAM CG15882 DOWNSTREAM tgy INTERGENIC
3L	17955248	3L_17955248_SNP [dm3] 3L_17962148_SNP [dm6]	A	T	2.223e^-4	0.631	UPSTREAM Eip75B INTRON Eip75B	TF binding site mE1_TFBS_Trl
2L	11023837	2L_11023837_SNP [dm3] 2L_11023837_SNP [dm6]	T	G	2.225e^-4	0.631	INTRON Samuel	TF binding site mE1_TFBS_cad
3R	11989310	3R_11989310_SNP [dm3] 3R_16163588_SNP [dm6]	T	C	2.226e^-4	0.631	INTRON CG6006
2R	11080952	2R_11080952_SNP [dm3] 2R_15193447_SNP [dm6]	A	T	2.227e^-4	0.631	UPSTREAM Sfp51E DOWNSTREAM CG43829 INTERGENIC
2R	19745704	2R_19745704_SNP [dm3] 2R_23858181_SNP [dm6]	A	T	2.231e^-4	0.631	SYNONYMOUS_CODING bgcn DOWNSTREAM TBPH	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	21903199	2L_21903199_SNP [dm3] 2L_21903199_SNP [dm6]	C	T	2.235e^-4	0.631	NON_SYNONYMOUS_CODING CG1421	TF binding site mE1_TFBS_HSA
3L	5480794	3L_5480794_SNP [dm3] 3L_5487694_SNP [dm6]	A	C	2.237e^-4	0.631	INTERGENIC
2R	17558373	2R_17558373_SNP [dm3] 2R_21670868_SNP [dm6]	G	T	2.242e^-4	0.631	NON_SYNONYMOUS_CODING NC2alpha UPSTREAM CG9865 & 4 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24426021	3R_24426021_SNP [dm3] 3R_28600299_SNP [dm6]	G	T	2.245e^-4	0.631	UPSTREAM Hrb98DE INTRON Hrb98DE	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7701191	2L_7701191_SNP [dm3] 2L_7701191_SNP [dm6]	G	T	2.251e^-4	0.631	INTRON Tep2	TF binding site mE1_TFBS_Trl
3L	14079569	3L_14079569_SNP [dm3] 3L_14086469_SNP [dm6]	A	G	2.255e^-4	0.631	DOWNSTREAM CG8100 INTERGENIC
3L	22600727	3L_22600727_SNP [dm3] 3L_22607627_SNP [dm6]	A	G	2.263e^-4	0.631	DOWNSTREAM CG6914 INTRON CG14459
2L	2802999	2L_2802999_SNP [dm3] 2L_2802999_SNP [dm6]	C	T	2.277e^-4	0.631	INTERGENIC
2R	17558222	2R_17558222_SNP [dm3] 2R_21670717_SNP [dm6]	C	G	2.279e^-4	0.631	SYNONYMOUS_CODING NC2alpha UPSTREAM CG9865 & 4 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16376073	2R_16376073_SNP [dm3] 2R_20488568_SNP [dm6]	C	T	2.285e^-4	0.631	INTERGENIC
2L	16196041	2L_16196041_SNP [dm3] 2L_16196041_SNP [dm6]	G	T	2.285e^-4	0.631	UPSTREAM CR44734 EXON CR44735	TF binding site mE1_TFBS_HSA
3R	26722453	3R_26722453_SNP [dm3] 3R_30896731_SNP [dm6]	T	A	2.285e^-4	0.631	INTRON Cyp4c3
2L	5181747	2L_5181747_SNP [dm3] 2L_5181747_SNP [dm6]	C	G	2.286e^-4	0.631	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2R	18652995	2R_18652995_SNP [dm3] 2R_22765490_SNP [dm6]	C	T	2.288e^-4	0.631	DOWNSTREAM CG13527 INTRON CG42260
3R	16988888	3R_16988888_SNP [dm3] 3R_21163166_SNP [dm6]	G	T	2.289e^-4	0.631	UPSTREAM CG5810 INTRON SNF4Agamma
2R	18727338	2R_18727338_SNP [dm3] 2R_22839815_SNP [dm6]	C	T	2.292e^-4	0.631	UPSTREAM CG9826 DOWNSTREAM CG9825 INTERGENIC
X	5289897	X_5289897_SNP [dm3] X_5395864_SNP [dm6]	A	T	2.297e^-4	0.631	INTRON SK
2R	16817456	2R_16817456_SNP [dm3] 2R_20929951_SNP [dm6]	T	A	2.302e^-4	0.631	INTRON Rx
2L	5181668	2L_5181668_DEL [dm3] 2L_5181668_DEL [dm6]	GGCG	G	2.303e^-4	0.631	CODON_DELETION Msp300 INTRON Msp300	TF binding site mE1_TFBS_HSA
3R	24994238	3R_24994238_SNP [dm3] 3R_29168516_SNP [dm6]	G	A	2.305e^-4	0.631	INTRON CG11898
3L	7484565	3L_7484565_SNP [dm3] 3L_7491465_SNP [dm6]	G	C	2.307e^-4	0.631	UPSTREAM Cyp316a1 INTERGENIC
X	19018446	X_19018446_SNP [dm3] X_19124413_SNP [dm6]	A	G	2.309e^-4	0.631	UPSTREAM CG15882 DOWNSTREAM tgy INTERGENIC
3L	6557134	3L_6557134_SNP [dm3] 3L_6564034_SNP [dm6]	C	T	2.311e^-4	0.631	SYNONYMOUS_CODING jv INTRON CG18769	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3403617	X_3403617_SNP [dm3] X_3509584_SNP [dm6]	A	G	2.314e^-4	0.631	UTR_3_PRIME CG32791 INTRON CR44999
2L	14734121	2L_14734121_SNP [dm3] 2L_14734121_SNP [dm6]	A	G	2.315e^-4	0.631	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	3963196	2R_3963196_SNP [dm3] 2R_8075691_SNP [dm6]	T	G	2.315e^-4	0.631	SYNONYMOUS_CODING lig UTR_3_PRIME lig	TF binding site mE1_TFBS_HSA
X	2592987	X_2592987_SNP [dm3] X_2698954_SNP [dm6]	C	T	2.316e^-4	0.631	SYNONYMOUS_CODING CG2662 UPSTREAM CG2658	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	20851359	3L_20851359_SNP [dm3] 3L_20858259_SNP [dm6]	T	G	2.327e^-4	0.631	INTRON CG32432
2L	847107	2L_847107_SNP [dm3] 2L_847107_SNP [dm6]	T	C	2.332e^-4	0.631	INTRON drongo
2L	7598483	2L_7598483_SNP [dm3] 2L_7598483_SNP [dm6]	A	C	2.339e^-4	0.631	INTERGENIC
3R	3139444	3R_3139444_SNP [dm3] 3R_7313722_SNP [dm6]	A	T	2.340e^-4	0.631	UPSTREAM CR44334 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	16973525	2R_16973525_SNP [dm3] 2R_21086020_SNP [dm6]	A	T	2.349e^-4	0.631	SYNONYMOUS_CODING Treh	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15394537	2R_15394537_SNP [dm3] 2R_19507032_SNP [dm6]	G	C	2.350e^-4	0.631	UPSTREAM tRNA:H:56E INTERGENIC
3R	15967852	3R_15967852_SNP [dm3] 3R_20142130_SNP [dm6]	G	C	2.351e^-4	0.631	INTERGENIC
3L	2235540	3L_2235540_SNP [dm3] 3L_2235540_SNP [dm6]	C	T	2.355e^-4	0.631	SYNONYMOUS_CODING CG9018 DOWNSTREAM CG9018 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12341480	2L_12341480_SNP [dm3] 2L_12341480_SNP [dm6]	T	C	2.355e^-4	0.631	INTERGENIC
2L	21805871	2L_21805871_SNP [dm3] 2L_21805871_SNP [dm6]	G	C	2.358e^-4	0.631	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	5181735	2L_5181735_SNP [dm3] 2L_5181735_SNP [dm6]	A	G	2.359e^-4	0.631	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	658502	3L_658502_SNP [dm3] 3L_658502_SNP [dm6]	A	G	2.378e^-4	0.631	DOWNSTREAM Rev1 INTERGENIC
2L	21846992	2L_21846992_SNP [dm3] 2L_21846992_SNP [dm6]	A	C	2.381e^-4	0.631	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11467370	2R_11467370_INS [dm3] 2R_15579865_INS [dm6]	A	AAGTGAA	2.383e^-4	0.631	INTERGENIC
2R	18660356	2R_18660356_INS [dm3] 2R_22772851_INS [dm6]	A	ACTTTT	2.384e^-4	0.631	INTRON CG42260
2L	11023830	2L_11023830_DEL [dm3] 2L_11023830_DEL [dm6]	TT	T	2.385e^-4	0.631	INTRON Samuel	TF binding site mE1_TFBS_cad
3L	22843460	3L_22843460_SNP [dm3] 3L_22850360_SNP [dm6]	C	T	2.385e^-4	0.631	EXON CR43426	TF binding site BDTNP1_TFBS_twi
3R	26050371	3R_26050371_SNP [dm3] 3R_30224649_SNP [dm6]	G	A	2.385e^-4	0.631	INTERGENIC
3R	26031922	3R_26031922_SNP [dm3] 3R_30206200_SNP [dm6]	A	C	2.388e^-4	0.631	DOWNSTREAM RpS7 & 3 others INTERGENIC
3L	4845804	3L_4845804_SNP [dm3] 3L_4845804_SNP [dm6]	G	A	2.393e^-4	0.631	INTERGENIC
3L	6459290	3L_6459290_SNP [dm3] 3L_6466190_SNP [dm6]	C	G	2.396e^-4	0.631	INTRON CG42747
2L	4512876	2L_4512876_SNP [dm3] 2L_4512876_SNP [dm6]	A	G	2.398e^-4	0.631	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18633099	3L_18633099_SNP [dm3] 3L_18639999_SNP [dm6]	G	C	2.402e^-4	0.631	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	5251186	X_5251186_SNP [dm3] X_5357153_SNP [dm6]	G	A	2.403e^-4	0.631	INTRON SK
2L	11943419	2L_11943419_SNP [dm3] 2L_11943419_SNP [dm6]	A	G	2.403e^-4	0.631	UPSTREAM Cry INTERGENIC	regulatory region REDfly_CRMs
X	6103026	X_6103026_SNP [dm3] X_6208993_SNP [dm6]	G	A	2.404e^-4	0.631	INTERGENIC
3L	1863498	3L_1863498_SNP [dm3] 3L_1863498_SNP [dm6]	G	C	2.405e^-4	0.631	SYNONYMOUS_CODING HBS1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	19019021	X_19019021_SNP [dm3] X_19124988_SNP [dm6]	T	A	2.406e^-4	0.631	UPSTREAM CG15882 DOWNSTREAM tgy INTERGENIC
2R	15394540	2R_15394540_SNP [dm3] 2R_19507035_SNP [dm6]	G	T	2.406e^-4	0.631	UPSTREAM tRNA:H:56E INTERGENIC
3L	10866961	3L_10866961_SNP [dm3] 3L_10873861_SNP [dm6]	T	G	2.407e^-4	0.631	INTRON tna	TF binding site mE1_TFBS_cad
X	20218412	X_20218412_SNP [dm3] X_20347385_SNP [dm6]	T	A	2.408e^-4	0.631	INTERGENIC
X	6748024	X_6748024_SNP [dm3] X_6853991_SNP [dm6]	A	T	2.414e^-4	0.631	INTRON CG14434	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3R	13198550	3R_13198550_SNP [dm3] 3R_17372828_SNP [dm6]	A	T	2.419e^-4	0.631	INTERGENIC
2R	17915065	2R_17915065_SNP [dm3] 2R_22027560_SNP [dm6]	T	C	2.419e^-4	0.631	INTRON CG34370
3L	11651394	3L_11651394_SNP [dm3] 3L_11658294_SNP [dm6]	C	T	2.433e^-4	0.631	INTRON CG32085
3L	9739614	3L_9739614_SNP [dm3] 3L_9746514_SNP [dm6]	A	C	2.434e^-4	0.631	INTRON CG42268
3L	6458297	3L_6458297_SNP [dm3] 3L_6465197_SNP [dm6]	A	C	2.434e^-4	0.631	INTRON CG42747	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10332101	2R_10332101_SNP [dm3] 2R_14444596_SNP [dm6]	G	C	2.438e^-4	0.631	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17953345	3L_17953345_SNP [dm3] 3L_17960245_SNP [dm6]	A	G	2.442e^-4	0.631	INTRON Eip75B
3R	23965546	3R_23965546_SNP [dm3] 3R_28139824_SNP [dm6]	C	G	2.445e^-4	0.631	INTERGENIC
3L	12642110	3L_12642110_SNP [dm3] 3L_12649010_SNP [dm6]	T	G	2.445e^-4	0.631	DOWNSTREAM CR32111 EXON CR43431	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	11809246	3L_11809246_SNP [dm3] 3L_11816146_SNP [dm6]	A	G	2.449e^-4	0.631	SYNONYMOUS_CODING CG14130 DOWNSTREAM CG5946	TF binding site mE1_TFBS_sens
2L	12686768	2L_12686768_SNP [dm3] 2L_12686768_SNP [dm6]	G	T	2.453e^-4	0.631	DOWNSTREAM pdm2 INTERGENIC
2R	13398853	2R_13398853_SNP [dm3] 2R_17511348_SNP [dm6]	A	C	2.453e^-4	0.631	UTR_3_PRIME CG34193 UPSTREAM CG4847 DOWNSTREAM CG34193
3L	14079527	3L_14079527_SNP [dm3] 3L_14086427_SNP [dm6]	A	G	2.455e^-4	0.631	DOWNSTREAM CG8100 INTERGENIC
3L	14079538	3L_14079538_SNP [dm3] 3L_14086438_SNP [dm6]	C	A	2.455e^-4	0.631	DOWNSTREAM CG8100 INTERGENIC
3L	14079541	3L_14079541_SNP [dm3] 3L_14086441_SNP [dm6]	T	A	2.455e^-4	0.631	DOWNSTREAM CG8100 INTERGENIC
3L	14079545	3L_14079545_DEL [dm3] 3L_14086445_DEL [dm6]	TTAAATTTAGTTATTTAAAA...	T	2.455e^-4	0.631	DOWNSTREAM CG8100 INTERGENIC
3L	14079571	3L_14079571_DEL [dm3] 3L_14086471_DEL [dm6]	ACTGAAACTGAAC...	A	2.455e^-4	0.631	DOWNSTREAM CG8100 INTERGENIC
3R	13175133	3R_13175133_SNP [dm3] 3R_17349411_SNP [dm6]	A	C	2.457e^-4	0.631	INTRON beat-IIa
2L	12993466	2L_12993466_SNP [dm3] 2L_12993466_SNP [dm6]	G	C	2.463e^-4	0.631	DOWNSTREAM CG12404 INTERGENIC
3L	18319737	3L_18319737_DEL [dm3] 3L_18326637_DEL [dm6]	AA	A	2.469e^-4	0.631	INTERGENIC
3L	23295043	3L_23295043_SNP [dm3] 3L_23301943_SNP [dm6]	T	A	2.471e^-4	0.631	INTERGENIC	transposable element FlyBase
3L	914687	3L_914687_SNP [dm3] 3L_914687_SNP [dm6]	C	T	2.474e^-4	0.631	INTRON Glut1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12993085	2L_12993085_SNP [dm3] 2L_12993085_SNP [dm6]	A	G	2.481e^-4	0.631	DOWNSTREAM CG12404 INTERGENIC
2L	15386272	2L_15386272_INS [dm3] 2L_15386272_INS [dm6]	G	TTTC	2.481e^-4	0.631	INTERGENIC
3R	10592507	3R_10592507_SNP [dm3] 3R_14766785_SNP [dm6]	C	G	2.484e^-4	0.631	INTRON jvl
2L	12687459	2L_12687459_DEL [dm3] 2L_12687459_DEL [dm6]	ACCTAC	A	2.487e^-4	0.631	INTERGENIC
2L	21913716	2L_21913716_SNP [dm3] 2L_21913716_SNP [dm6]	A	T	2.494e^-4	0.631	DOWNSTREAM CG31600 INTERGENIC
X	5864496	X_5864496_SNP [dm3] X_5970463_SNP [dm6]	G	A	2.497e^-4	0.631	INTRON Grip	TF binding site BDTNP1_TFBS_da
3R	26704785	3R_26704785_SNP [dm3] 3R_30879063_SNP [dm6]	A	G	2.498e^-4	0.631	INTRON CG12071	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12891367	3R_12891367_SNP [dm3] 3R_17065645_SNP [dm6]	T	G	2.500e^-4	0.631	INTRON Dad	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	15375755	2R_15375755_SNP [dm3] 2R_19488250_SNP [dm6]	A	G	2.501e^-4	0.631	SYNONYMOUS_CODING Oseg6
3L	11809335	3L_11809335_SNP [dm3] 3L_11816235_SNP [dm6]	C	T	2.505e^-4	0.631	NON_SYNONYMOUS_CODING CG14130 DOWNSTREAM CG5946	TF binding site mE1_TFBS_sens
3L	16932704	3L_16932704_SNP [dm3] 3L_16939604_SNP [dm6]	C	G	2.508e^-4	0.631	NON_SYNONYMOUS_CODING Cpr73D UPSTREAM CG13022	TF binding site mE1_TFBS_chinmo
2R	15212757	2R_15212757_SNP [dm3] 2R_19325252_SNP [dm6]	T	A	2.513e^-4	0.631	UTR_5_PRIME Rgk1 INTRON Rgk1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	10344067	2R_10344067_SNP [dm3] 2R_14456562_SNP [dm6]	G	C	2.524e^-4	0.631	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15299750	3R_15299750_SNP [dm3] 3R_19474028_SNP [dm6]	T	A	2.525e^-4	0.631	INTRON Dys
3R	3441313	3R_3441313_SNP [dm3] 3R_7615591_SNP [dm6]	C	T	2.525e^-4	0.631	INTRON CG34127
3L	15307036	3L_15307036_SNP [dm3] 3L_15313936_SNP [dm6]	C	G	2.533e^-4	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	3474234	2L_3474234_SNP [dm3] 2L_3474234_SNP [dm6]	A	T	2.536e^-4	0.631	INTRON pgant4	TF binding site mE1_TFBS_inv
2L	3474247	2L_3474247_SNP [dm3] 2L_3474247_SNP [dm6]	T	A	2.536e^-4	0.631	INTRON pgant4	TF binding site mE1_TFBS_inv
3L	18319750	3L_18319750_SNP [dm3] 3L_18326650_SNP [dm6]	T	G	2.536e^-4	0.631	INTERGENIC
3R	3622654	3R_3622654_SNP [dm3] 3R_7796932_SNP [dm6]	C	A	2.539e^-4	0.631	DOWNSTREAM CG18744 & 1 other INTERGENIC
2R	3957067	2R_3957067_SNP [dm3] 2R_8069562_SNP [dm6]	T	C	2.541e^-4	0.631	UPSTREAM lig INTRON lig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	19700952	2L_19700952_SNP [dm3] 2L_19700952_SNP [dm6]	C	A	2.542e^-4	0.631	UTR_5_PRIME scw INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12294002	2L_12294002_SNP [dm3] 2L_12294002_SNP [dm6]	C	A	2.545e^-4	0.631	INTRON aret
3L	17193388	3L_17193388_SNP [dm3] 3L_17200288_SNP [dm6]	T	A	2.546e^-4	0.631	INTRON Rbp6
3R	21677059	3R_21677059_SNP [dm3] 3R_25851337_SNP [dm6]	C	T	2.548e^-4	0.631	UPSTREAM CG5886 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	26963968	3R_26963968_SNP [dm3] 3R_31138246_SNP [dm6]	A	C	2.552e^-4	0.631	INTRON Gycbeta100B
2L	19383464	2L_19383464_SNP [dm3] 2L_19383464_SNP [dm6]	A	C	2.559e^-4	0.631	UTR_3_PRIME fon DOWNSTREAM fon & 1 other
3L	5192582	3L_5192582_SNP [dm3] 3L_5199482_SNP [dm6]	C	T	2.560e^-4	0.631	INTRON shep
2L	15929553	2L_15929553_SNP [dm3] 2L_15929553_SNP [dm6]	C	T	2.561e^-4	0.631	INTRON beat-Ib
2R	16072489	2R_16072489_SNP [dm3] 2R_20184984_SNP [dm6]	G	T	2.561e^-4	0.631	INTERGENIC
3L	5192705	3L_5192705_SNP [dm3] 3L_5199605_SNP [dm6]	C	T	2.562e^-4	0.631	INTRON shep
3R	6928830	3R_6928830_SNP [dm3] 3R_11103108_SNP [dm6]	C	T	2.566e^-4	0.631	INTERGENIC
3L	8910621	3L_8910621_SNP [dm3] 3L_8917521_SNP [dm6]	C	G	2.568e^-4	0.631	INTRON Tsp66E
3L	718514	3L_718514_SNP [dm3] 3L_718514_SNP [dm6]	A	G	2.570e^-4	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25202680	3R_25202680_SNP [dm3] 3R_29376958_SNP [dm6]	A	T	2.570e^-4	0.631	UPSTREAM Ptp99A INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20513603	2R_20513603_SNP [dm3] 2R_24626080_SNP [dm6]	A	C	2.579e^-4	0.631	INTRON CG13594
2L	13257856	2L_13257856_SNP [dm3] 2L_13257856_SNP [dm6]	G	A	2.580e^-4	0.631	SYNONYMOUS_CODING CG31851 DOWNSTREAM CG31728
2R	3953093	2R_3953093_SNP [dm3] 2R_8065588_SNP [dm6]	G	C	2.582e^-4	0.631	UPSTREAM CG12769 DOWNSTREAM CG17977 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6929015	3R_6929015_SNP [dm3] 3R_11103293_SNP [dm6]	C	T	2.586e^-4	0.631	INTERGENIC
3L	7176793	3L_7176793_SNP [dm3] 3L_7183693_SNP [dm6]	G	A	2.586e^-4	0.631	SYNONYMOUS_CODING Dscam2	TF binding site BDTNP1_TFBS_twi
3L	2937590	3L_2937590_SNP [dm3] 3L_2937590_SNP [dm6]	G	A	2.587e^-4	0.631	INTRON Shab
3L	8915198	3L_8915198_SNP [dm3] 3L_8922098_SNP [dm6]	T	A	2.589e^-4	0.631	INTRON Tsp66E
2L	8135638	2L_8135638_SNP [dm3] 2L_8135638_SNP [dm6]	T	G	2.594e^-4	0.631	INTRON CG8552	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	14083846	2R_14083846_SNP [dm3] 2R_18196341_SNP [dm6]	T	A	2.597e^-4	0.631	INTERGENIC
2L	11023826	2L_11023826_SNP [dm3] 2L_11023826_SNP [dm6]	G	T	2.603e^-4	0.631	INTRON Samuel	TF binding site mE1_TFBS_cad
X	8286930	X_8286930_DEL [dm3] X_8392897_DEL [dm6]	CC	C	2.603e^-4	0.631	INTERGENIC
2L	21906150	2L_21906150_DEL [dm3] 2L_21906150_DEL [dm6]	CACCTCTG	C	2.605e^-4	0.631	UPSTREAM CG1428 INTERGENIC
2L	3465112	2L_3465112_SNP [dm3] 2L_3465112_SNP [dm6]	T	C	2.607e^-4	0.631	SYNONYMOUS_CODING msl-2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16294815	3R_16294815_SNP [dm3] 3R_20469093_SNP [dm6]	G	A	2.617e^-4	0.631	INTRON Gfrl
3L	18412692	3L_18412692_SNP [dm3] 3L_18419592_SNP [dm6]	C	T	2.618e^-4	0.631	INTERGENIC
2R	10676867	2R_10676867_SNP [dm3] 2R_14789362_SNP [dm6]	T	C	2.622e^-4	0.631	INTRON kn	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3L	6558071	3L_6558071_SNP [dm3] 3L_6564971_SNP [dm6]	G	A	2.622e^-4	0.631	SPLICE_SITE_REGION jv SYNONYMOUS_CODING jv INTRON CG18769	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3R	9330160	3R_9330160_SNP [dm3] 3R_13504438_SNP [dm6]	G	C	2.627e^-4	0.631	INTERGENIC
3R	6928829	3R_6928829_SNP [dm3] 3R_11103107_SNP [dm6]	A	G	2.630e^-4	0.631	INTERGENIC
2L	12686349	2L_12686349_SNP [dm3] 2L_12686349_SNP [dm6]	C	G	2.630e^-4	0.631	DOWNSTREAM pdm2 INTERGENIC
3R	25641067	3R_25641067_SNP [dm3] 3R_29815345_SNP [dm6]	C	A	2.637e^-4	0.631	SYNONYMOUS_CODING Vps16B DOWNSTREAM ca	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18243293	2R_18243293_SNP [dm3] 2R_22355788_SNP [dm6]	C	T	2.637e^-4	0.631	INTRON Liprin-gamma
2R	18146332	2R_18146332_SNP [dm3] 2R_22258827_SNP [dm6]	A	C	2.637e^-4	0.631	INTRON dve
3R	10573381	3R_10573381_SNP [dm3] 3R_14747659_SNP [dm6]	T	A	2.638e^-4	0.631	UPSTREAM smp-30 INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	13471520	2L_13471520_SNP [dm3] 2L_13471520_SNP [dm6]	A	G	2.639e^-4	0.631	INTRON CG42784
3L	8539299	3L_8539299_SNP [dm3] 3L_8546199_SNP [dm6]	T	G	2.639e^-4	0.631	UPSTREAM rhea INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5534685	2L_5534685_SNP [dm3] 2L_5534685_SNP [dm6]	C	A	2.640e^-4	0.631	SYNONYMOUS_CODING Cap-D3	TF binding site mE1_TFBS_HSA
3L	8471424	3L_8471424_SNP [dm3] 3L_8478324_SNP [dm6]	A	G	2.646e^-4	0.631	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	4663885	2R_4663885_SNP [dm3] 2R_8776380_SNP [dm6]	T	C	2.653e^-4	0.631	INTERGENIC
X	914281	X_914281_SNP [dm3] X_1020248_SNP [dm6]	G	A	2.654e^-4	0.631	UTR_3_PRIME CG32814 INTRON su_w[a]_ & 1 other
2L	1718112	2L_1718112_SNP [dm3] 2L_1718112_SNP [dm6]	A	G	2.654e^-4	0.631	SYNONYMOUS_CODING Rim2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10344148	2R_10344148_SNP [dm3] 2R_14456643_SNP [dm6]	C	T	2.657e^-4	0.631	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1243265	3L_1243265_SNP [dm3] 3L_1243265_SNP [dm6]	C	T	2.662e^-4	0.631	SYNONYMOUS_CODING Klp61F
X	19880874	X_19880874_SNP [dm3] X_19986841_SNP [dm6]	C	T	2.669e^-4	0.631	INTERGENIC
2R	17575287	2R_17575287_SNP [dm3] 2R_21687782_SNP [dm6]	T	A	2.672e^-4	0.631	UPSTREAM Tbp & 1 other DOWNSTREAM CG30285 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	7725085	X_7725085_SNP [dm3] X_7831052_SNP [dm6]	C	G	2.674e^-4	0.631	INTRON CG1402
3L	806508	3L_806508_SNP [dm3] 3L_806508_SNP [dm6]	A	C	2.680e^-4	0.631	INTERGENIC
3L	6558068	3L_6558068_SNP [dm3] 3L_6564968_SNP [dm6]	C	T	2.680e^-4	0.631	SYNONYMOUS_CODING jv INTRON CG18769	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3L	10247049	3L_10247049_SNP [dm3] 3L_10253949_SNP [dm6]	T	C	2.681e^-4	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	19019022	X_19019022_SNP [dm3] X_19124989_SNP [dm6]	T	A	2.682e^-4	0.631	UPSTREAM CG15882 DOWNSTREAM tgy INTERGENIC
2L	19587575	2L_19587575_SNP [dm3] 2L_19587575_SNP [dm6]	A	C	2.684e^-4	0.631	INTRON Lar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3349304	3L_3349304_SNP [dm3] 3L_3349304_SNP [dm6]	C	T	2.687e^-4	0.631	UPSTREAM kst INTRON kst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3277294	3L_3277294_SNP [dm3] 3L_3277294_SNP [dm6]	A	T	2.689e^-4	0.631	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	1272931	3L_1272931_SNP [dm3] 3L_1272931_SNP [dm6]	C	T	2.697e^-4	0.631	INTRON CG9134	TF binding site mE1_TFBS_cad
2R	11730831	2R_11730831_SNP [dm3] 2R_15843326_SNP [dm6]	C	A	2.699e^-4	0.631	UTR_3_PRIME CG8249 DOWNSTREAM CG8249 INTRON tun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	26860184	3R_26860184_SNP [dm3] 3R_31034462_SNP [dm6]	G	C	2.702e^-4	0.631	UPSTREAM CG33773 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	5146518	3R_5146518_SNP [dm3] 3R_9320796_SNP [dm6]	C	A	2.703e^-4	0.631	UPSTREAM HP1e INTRON CG8861
3L	13426393	3L_13426393_SNP [dm3] 3L_13433293_SNP [dm6]	G	A	2.704e^-4	0.631	DOWNSTREAM tRNA:V4:70BCa & 1 other INTRON CG10713
2R	7184764	2R_7184764_SNP [dm3] 2R_11297259_SNP [dm6]	T	C	2.707e^-4	0.631	INTRON CG42336	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	19018883	X_19018883_SNP [dm3] X_19124850_SNP [dm6]	C	T	2.714e^-4	0.631	UPSTREAM CG15882 DOWNSTREAM tgy INTERGENIC
X	14010446	X_14010446_INS [dm3] X_14116413_INS [dm6]	T	TT	2.722e^-4	0.631	EXON CR44657	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	20033748	3L_20033748_SNP [dm3] 3L_20040648_SNP [dm6]	T	A	2.724e^-4	0.631	INTERGENIC	transposable element FlyBase
3L	17955235	3L_17955235_SNP [dm3] 3L_17962135_SNP [dm6]	T	A	2.726e^-4	0.631	UPSTREAM Eip75B INTRON Eip75B
X	4155467	X_4155467_SNP [dm3] X_4261434_SNP [dm6]	A	T	2.726e^-4	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25801661	3R_25801661_SNP [dm3] 3R_29975939_SNP [dm6]	G	A	2.732e^-4	0.631	INTERGENIC
2L	7418894	2L_7418894_DEL [dm3] 2L_7418894_DEL [dm6]	TATTATC	T	2.733e^-4	0.631	INTRON chm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	21906159	2L_21906159_DEL [dm3] 2L_21906159_DEL [dm6]	TCGACA	T	2.736e^-4	0.631	UPSTREAM CG1428 INTERGENIC
3R	446713	3R_446713_SNP [dm3] 3R_4620991_SNP [dm6]	T	C	2.739e^-4	0.631	INTRON 5-HT2A	transposable element FlyBase
3R	23972534	3R_23972534_SNP [dm3] 3R_28146812_SNP [dm6]	T	G	2.744e^-4	0.631	UPSTREAM CG34354 INTERGENIC
3R	10747102	3R_10747102_SNP [dm3] 3R_14921380_SNP [dm6]	C	T	2.746e^-4	0.631	SYNONYMOUS_CODING Sdr
3L	1645310	3L_1645310_SNP [dm3] 3L_1645310_SNP [dm6]	C	T	2.754e^-4	0.631	UPSTREAM CG13919 & 1 other DOWNSTREAM CG17249 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	6514392	2L_6514392_SNP [dm3] 2L_6514392_SNP [dm6]	T	C	2.766e^-4	0.631	INTRON CG31637
3L	8643687	3L_8643687_SNP [dm3] 3L_8650587_SNP [dm6]	G	A	2.767e^-4	0.631	SYNONYMOUS_CODING Pex7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22466716	3L_22466716_SNP [dm3] 3L_22473616_SNP [dm6]	C	T	2.768e^-4	0.631	DOWNSTREAM CR45382 & 1 other INTERGENIC
X	6747608	X_6747608_SNP [dm3] X_6853575_SNP [dm6]	T	C	2.768e^-4	0.631	UPSTREAM CG14434 INTRON CG14434	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	13733561	2R_13733561_SNP [dm3] 2R_17846056_SNP [dm6]	C	G	2.770e^-4	0.631	UPSTREAM olf186-M INTRON olf186-F	TF binding site mE1_TFBS_Trl
2R	18356494	2R_18356494_SNP [dm3] 2R_22468989_SNP [dm6]	A	G	2.772e^-4	0.631	INTRON CG10384	TF binding site BDTNP1_TFBS_twi
3L	1243650	3L_1243650_SNP [dm3] 3L_1243650_SNP [dm6]	T	A	2.774e^-4	0.631	INTRON Klp61F
2R	19820031	2R_19820031_SNP [dm3] 2R_23932508_SNP [dm6]	T	A	2.774e^-4	0.631	INTRON Ca-P60A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_sens
2R	14184366	2R_14184366_SNP [dm3] 2R_18296861_SNP [dm6]	A	T	2.777e^-4	0.631	UPSTREAM CG18538 & 1 other DOWNSTREAM CG18537 INTRON sbb
3L	1646170	3L_1646170_SNP [dm3] 3L_1646170_SNP [dm6]	G	A	2.781e^-4	0.631	SYNONYMOUS_CODING CG17249 UPSTREAM alphaCOP DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19995053	2R_19995053_SNP [dm3] 2R_24107530_SNP [dm6]	A	T	2.789e^-4	0.631	UTR_3_PRIME CG4049 DOWNSTREAM enok
2L	9293609	2L_9293609_SNP [dm3] 2L_9293609_SNP [dm6]	C	G	2.791e^-4	0.631	UTR_3_PRIME Ggamma30A DOWNSTREAM Ggamma30A
3L	7247725	3L_7247725_SNP [dm3] 3L_7254625_SNP [dm6]	T	C	2.794e^-4	0.631	INTRON CG14830
2L	21926259	2L_21926259_SNP [dm3] 2L_21926259_SNP [dm6]	C	T	2.795e^-4	0.631	INTERGENIC
3L	10111646	3L_10111646_SNP [dm3] 3L_10118546_SNP [dm6]	G	A	2.801e^-4	0.631	INTRON dpr6
2L	21902351	2L_21902351_SNP [dm3] 2L_21902351_SNP [dm6]	A	G	2.804e^-4	0.631	UPSTREAM CG1421 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25201630	3R_25201630_SNP [dm3] 3R_29375908_SNP [dm6]	T	C	2.807e^-4	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3R	13198559	3R_13198559_SNP [dm3] 3R_17372837_SNP [dm6]	G	A	2.814e^-4	0.631	INTERGENIC
3R	14258930	3R_14258930_SNP [dm3] 3R_18433208_SNP [dm6]	C	T	2.815e^-4	0.631	INTRON fru
X	8094483	X_8094483_SNP [dm3] X_8200450_SNP [dm6]	A	C	2.817e^-4	0.631	INTRON sdt
3L	5372382	3L_5372382_SNP [dm3] 3L_5379282_SNP [dm6]	G	A	2.818e^-4	0.631	SYNONYMOUS_CODING Ir64a DOWNSTREAM CR45743
3R	26722561	3R_26722561_SNP [dm3] 3R_30896839_SNP [dm6]	A	G	2.822e^-4	0.631	INTRON Cyp4c3
3L	11148559	3L_11148559_SNP [dm3] 3L_11155459_SNP [dm6]	C	A	2.824e^-4	0.631	INTRON CG32082
X	5058497	X_5058497_SNP [dm3] X_5164464_SNP [dm6]	A	T	2.825e^-4	0.631	UTR_5_PRIME CG15465 & 1 other UPSTREAM CG15465 & 1 other INTRON rg	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	14712145	2R_14712145_SNP [dm3] 2R_18824640_SNP [dm6]	G	A	2.825e^-4	0.631	UTR_5_PRIME CG15097 INTRON CG15097	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8842046	3L_8842046_SNP [dm3] 3L_8848946_SNP [dm6]	A	G	2.840e^-4	0.631	INTRON dally
3L	4058992	3L_4058992_SNP [dm3] 3L_4058992_SNP [dm6]	G	T	2.842e^-4	0.631	UTR_3_PRIME CG1136 UPSTREAM CG18869
3L	4058997	3L_4058997_SNP [dm3] 3L_4058997_SNP [dm6]	A	C	2.842e^-4	0.631	UTR_3_PRIME CG1136 UPSTREAM CG18869
2L	8135644	2L_8135644_SNP [dm3] 2L_8135644_SNP [dm6]	G	T	2.844e^-4	0.631	INTRON CG8552	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	8325810	2L_8325810_SNP [dm3] 2L_8325810_SNP [dm6]	A	G	2.845e^-4	0.631	UPSTREAM CG7781 INTERGENIC
3R	25430058	3R_25430058_SNP [dm3] 3R_29604336_SNP [dm6]	C	A	2.845e^-4	0.631	INTRON alph
2R	12201558	2R_12201558_SNP [dm3] 2R_16314053_SNP [dm6]	G	C	2.857e^-4	0.631	SYNONYMOUS_CODING Nox	TF binding site mE1_TFBS_cad
X	17865642	X_17865642_SNP [dm3] X_17971609_SNP [dm6]	A	G	2.859e^-4	0.631	INTRON Sh
2L	8008139	2L_8008139_SNP [dm3] 2L_8008139_SNP [dm6]	T	G	2.865e^-4	0.631	UPSTREAM Spn28Dc DOWNSTREAM CG12560 INTERGENIC
2R	16496867	2R_16496867_SNP [dm3] 2R_20609362_SNP [dm6]	G	A	2.868e^-4	0.631	SYNONYMOUS_CODING Hil	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7395635	2R_7395635_SNP [dm3] 2R_11508130_SNP [dm6]	A	T	2.876e^-4	0.631	UTR_3_PRIME inv DOWNSTREAM inv
3R	21900442	3R_21900442_SNP [dm3] 3R_26074720_SNP [dm6]	A	G	2.877e^-4	0.631	INTERGENIC
2L	6381516	2L_6381516_SNP [dm3] 2L_6381516_SNP [dm6]	C	T	2.886e^-4	0.631	SYNONYMOUS_CODING CG9507 INTRON CG42368	TF binding site mE1_TFBS_chinmo
3L	2377198	3L_2377198_SNP [dm3] 3L_2377198_SNP [dm6]	A	T	2.888e^-4	0.631	NON_SYNONYMOUS_CODING CG15877 UPSTREAM CG45186 DOWNSTREAM CG9004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2L	19383448	2L_19383448_DEL [dm3] 2L_19383448_DEL [dm6]	TT	T	2.888e^-4	0.631	UTR_3_PRIME fon DOWNSTREAM fon & 1 other
3R	3148316	3R_3148316_SNP [dm3] 3R_7322594_SNP [dm6]	A	G	2.890e^-4	0.631	INTERGENIC
3R	3067718	3R_3067718_SNP [dm3] 3R_7241996_SNP [dm6]	T	C	2.893e^-4	0.631	DOWNSTREAM CG14608 INTRON CG14607
2L	1057528	2L_1057528_SNP [dm3] 2L_1057528_SNP [dm6]	C	T	2.893e^-4	0.631	INTRON S	TF binding site mE1_TFBS_sens
3L	4118164	3L_4118164_SNP [dm3] 3L_4118164_SNP [dm6]	C	T	2.896e^-4	0.631	INTRON Chd64
2R	3950068	2R_3950068_INS [dm3] 2R_8062563_INS [dm6]	A	AGCACACCA	2.897e^-4	0.631	INTRON CG12769	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	9718015	3L_9718015_SNP [dm3] 3L_9724915_SNP [dm6]	T	C	2.903e^-4	0.631	SYNONYMOUS_CODING defl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26050324	3R_26050324_SNP [dm3] 3R_30224602_SNP [dm6]	T	G	2.906e^-4	0.631	INTERGENIC
2L	21805243	2L_21805243_SNP [dm3] 2L_21805243_SNP [dm6]	T	C	2.911e^-4	0.631	INTERGENIC
3L	1692312	3L_1692312_SNP [dm3] 3L_1692312_SNP [dm6]	C	G	2.915e^-4	0.631	INTRON CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20513692	2R_20513692_SNP [dm3] 2R_24626169_SNP [dm6]	C	A	2.916e^-4	0.631	INTRON CG13594
X	4227612	X_4227612_SNP [dm3] X_4333579_SNP [dm6]	C	T	2.919e^-4	0.631	INTRON norpA
2L	8006737	2L_8006737_SNP [dm3] 2L_8006737_SNP [dm6]	A	G	2.922e^-4	0.631	SYNONYMOUS_CODING Spn28Dc	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7501742	2L_7501742_SNP [dm3] 2L_7501742_SNP [dm6]	T	A	2.922e^-4	0.631	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19745734	2R_19745734_SNP [dm3] 2R_23858211_SNP [dm6]	G	A	2.932e^-4	0.631	SYNONYMOUS_CODING bgcn DOWNSTREAM TBPH	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	10969327	2R_10969327_SNP [dm3] 2R_15081822_SNP [dm6]	T	C	2.934e^-4	0.631	INTERGENIC	TF binding site mE1_TFBS_inv
2R	13994405	2R_13994405_SNP [dm3] 2R_18106900_SNP [dm6]	G	A	2.934e^-4	0.631	INTRON CG5756
3R	14648841	3R_14648841_SNP [dm3] 3R_18823119_SNP [dm6]	C	A	2.938e^-4	0.631	INTRON CG18208
2R	14978893	2R_14978893_SNP [dm3] 2R_19091388_SNP [dm6]	C	T	2.940e^-4	0.631	SYNONYMOUS_CODING 5-HT1A
3L	8811943	3L_8811943_SNP [dm3] 3L_8818843_SNP [dm6]	G	A	2.945e^-4	0.631	INTERGENIC
X	2139710	X_2139710_INS [dm3] X_2245677_INS [dm6]	T	TCCC	2.945e^-4	0.631	UTR_3_PRIME fs_1_K10 UPSTREAM Or2a
3R	24718588	3R_24718588_SNP [dm3] 3R_28892866_SNP [dm6]	T	G	2.947e^-4	0.631	INTRON Doa
2R	19330857	2R_19330857_SNP [dm3] 2R_23443334_SNP [dm6]	A	T	2.953e^-4	0.631	UPSTREAM CG43795 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	15208003	2R_15208003_SNP [dm3] 2R_19320498_SNP [dm6]	G	A	2.955e^-4	0.631	INTRON Rgk1
2L	2950956	2L_2950956_SNP [dm3] 2L_2950956_SNP [dm6]	T	C	2.955e^-4	0.631	SYNONYMOUS_CODING lilli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19995276	2R_19995276_SNP [dm3] 2R_24107753_SNP [dm6]	G	A	2.958e^-4	0.631	UTR_3_PRIME CG4049 DOWNSTREAM enok
2L	19122991	2L_19122991_SNP [dm3] 2L_19122991_SNP [dm6]	T	A	2.959e^-4	0.631	INTRON l_2_37Cc	regulatory region REDfly_CRMs
3R	13326474	3R_13326474_SNP [dm3] 3R_17500752_SNP [dm6]	T	C	2.965e^-4	0.631	INTRON Dscam3
3L	9718366	3L_9718366_SNP [dm3] 3L_9725266_SNP [dm6]	G	A	2.967e^-4	0.631	SYNONYMOUS_CODING defl
2R	4176364	2R_4176364_SNP [dm3] 2R_8288859_SNP [dm6]	T	C	2.970e^-4	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	17934262	3L_17934262_SNP [dm3] 3L_17941162_SNP [dm6]	C	T	2.971e^-4	0.631	INTRON CG43174
2L	11984869	2L_11984869_SNP [dm3] 2L_11984869_SNP [dm6]	G	C	2.971e^-4	0.631	SYNONYMOUS_CODING CG6686 UTR_3_PRIME CG6686 DOWNSTREAM CG16965	TF binding site mE1_TFBS_sens
3R	23971153	3R_23971153_SNP [dm3] 3R_28145431_SNP [dm6]	A	C	2.973e^-4	0.631	INTERGENIC
3L	1357446	3L_1357446_SNP [dm3] 3L_1357446_SNP [dm6]	T	A	2.980e^-4	0.631	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	9830105	2R_9830105_SNP [dm3] 2R_13942600_SNP [dm6]	A	G	2.985e^-4	0.631	SYNONYMOUS_CODING DJ-1alpha UPSTREAM shot DOWNSTREAM AGO1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_ttk
3L	3080587	3L_3080587_SNP [dm3] 3L_3080587_SNP [dm6]	G	T	2.986e^-4	0.631	UPSTREAM CG11486 INTRON CG11486	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	8618868	3L_8618868_SNP [dm3] 3L_8625768_SNP [dm6]	G	C	2.989e^-4	0.631	UPSTREAM Zasp66 INTRON Zasp66
3L	1692316	3L_1692316_SNP [dm3] 3L_1692316_SNP [dm6]	A	C	2.990e^-4	0.631	INTRON CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2893994	3L_2893994_SNP [dm3] 3L_2893994_SNP [dm6]	T	C	2.993e^-4	0.631	INTERGENIC
3R	26963842	3R_26963842_SNP [dm3] 3R_31138120_SNP [dm6]	G	A	2.994e^-4	0.631	INTRON Gycbeta100B
2L	10633508	2L_10633508_SNP [dm3] 2L_10633508_SNP [dm6]	T	G	2.998e^-4	0.631	INTRON CG7329	TF binding site mE1_TFBS_inv
2L	1542213	2L_1542213_INS [dm3] 2L_1542213_INS [dm6]	C	CC	3.006e^-4	0.631	INTERGENIC
3L	7567274	3L_7567274_SNP [dm3] 3L_7574174_SNP [dm6]	G	A	3.006e^-4	0.631	INTERGENIC
2R	13846590	2R_13846590_SNP [dm3] 2R_17959085_SNP [dm6]	T	C	3.010e^-4	0.631	INTERGENIC
2R	16555888	2R_16555888_DEL [dm3] 2R_20668383_DEL [dm6]	ATAAAACCTTTTACATTTAG...	A	3.011e^-4	0.631	UTR_3_PRIME exu INTRON exu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
X	5058698	X_5058698_SNP [dm3] X_5164665_SNP [dm6]	T	A	3.014e^-4	0.631	UTR_5_PRIME CG15465 & 1 other UPSTREAM CG15465 & 1 other INTRON rg	TF binding site mE1_TFBS_Trl
3R	24459904	3R_24459904_SNP [dm3] 3R_28634182_SNP [dm6]	C	T	3.014e^-4	0.631	INTRON CG10011	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
3R	23979408	3R_23979408_SNP [dm3] 3R_28153686_SNP [dm6]	T	A	3.018e^-4	0.632	INTRON CG34354
2R	15902342	2R_15902342_SNP [dm3] 2R_20014837_SNP [dm6]	A	G	3.031e^-4	0.632	DOWNSTREAM CR44629 INTERGENIC
3L	14236627	3L_14236627_SNP [dm3] 3L_14243527_SNP [dm6]	A	T	3.038e^-4	0.632	INTERGENIC
2R	10392098	2R_10392098_SNP [dm3] 2R_14504593_SNP [dm6]	C	A	3.039e^-4	0.632	UPSTREAM Asx INTRON Asx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	17384253	2R_17384253_SNP [dm3] 2R_21496748_SNP [dm6]	C	A	3.041e^-4	0.632	UTR_5_PRIME Fkbp14 INTRON Fkbp14	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
3R	18997385	3R_18997385_SNP [dm3] 3R_23171663_SNP [dm6]	T	C	3.042e^-4	0.632	INTRON Irk1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	6928769	3R_6928769_SNP [dm3] 3R_11103047_SNP [dm6]	A	T	3.048e^-4	0.632	INTERGENIC
3R	3271032	3R_3271032_DEL [dm3] 3R_7445310_DEL [dm6]	TTAATG	T	3.052e^-4	0.632	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	3271038	3R_3271038_INS [dm3] 3R_7445316_INS [dm6]	C	CT	3.052e^-4	0.632	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	3406851	X_3406851_INS [dm3] X_3512818_INS [dm6]	A	AA	3.058e^-4	0.632	UTR_3_PRIME CG32791 INTRON CR44999
3L	718193	3L_718193_INS [dm3] 3L_718193_INS [dm6]	A	TGCGAATTTTCGTCCG...	3.065e^-4	0.632	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21960363	2L_21960363_SNP [dm3] 2L_21960363_SNP [dm6]	A	T	3.070e^-4	0.632	UPSTREAM CR44804 INTERGENIC
X	3408265	X_3408265_DEL [dm3] X_3514232_DEL [dm6]	AT	G	3.071e^-4	0.632	UPSTREAM CG13021 INTRON CR44999 & 1 other
2L	2896284	2L_2896284_SNP [dm3] 2L_2896284_SNP [dm6]	C	T	3.077e^-4	0.632	INTRON lilli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	19039550	2L_19039550_SNP [dm3] 2L_19039550_SNP [dm6]	A	G	3.081e^-4	0.632	SYNONYMOUS_CODING mib2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	22134657	2L_22134657_SNP [dm3] 2L_22134657_SNP [dm6]	G	A	3.096e^-4	0.632	UTR_5_PRIME CG42748 INTRON CG42748	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2R	10539913	2R_10539913_SNP [dm3] 2R_14652408_SNP [dm6]	A	C	3.097e^-4	0.632	INTERGENIC
2L	7418770	2L_7418770_SNP [dm3] 2L_7418770_SNP [dm6]	G	T	3.099e^-4	0.632	DOWNSTREAM chm INTRON chm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	7418796	2L_7418796_SNP [dm3] 2L_7418796_SNP [dm6]	T	A	3.099e^-4	0.632	DOWNSTREAM chm INTRON chm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	7418861	2L_7418861_SNP [dm3] 2L_7418861_SNP [dm6]	G	C	3.099e^-4	0.632	INTRON chm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	7418868	2L_7418868_SNP [dm3] 2L_7418868_SNP [dm6]	C	T	3.099e^-4	0.632	INTRON chm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	4038004	2L_4038004_SNP [dm3] 2L_4038004_SNP [dm6]	A	G	3.102e^-4	0.632	INTRON ed
3R	3253357	3R_3253357_SNP [dm3] 3R_7427635_SNP [dm6]	A	T	3.102e^-4	0.632	INTERGENIC
2L	6100998	2L_6100998_INS [dm3] 2L_6100998_INS [dm6]	T	TATG	3.106e^-4	0.632	INTRON stai	TF binding site BDTNP1_TFBS_dl
X	14008823	X_14008823_SNP [dm3] X_14114790_SNP [dm6]	T	A	3.111e^-4	0.632	INTRON CR44657	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6584108	3L_6584108_SNP [dm3] 3L_6591008_SNP [dm6]	T	G	3.113e^-4	0.632	INTRON CG18769
3L	14236588	3L_14236588_DEL [dm3] 3L_14243488_DEL [dm6]	CTAGGA	C	3.115e^-4	0.632	INTERGENIC
2R	19884780	2R_19884780_SNP [dm3] 2R_23997257_SNP [dm6]	C	T	3.118e^-4	0.632	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13426572	3L_13426572_SNP [dm3] 3L_13433472_SNP [dm6]	A	G	3.125e^-4	0.632	DOWNSTREAM tRNA:V4:70BCa & 1 other INTRON CG10713
3R	14400413	3R_14400413_SNP [dm3] 3R_18574691_SNP [dm6]	C	A	3.130e^-4	0.632	INTRON CG7694 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	14717220	3R_14717220_SNP [dm3] 3R_18891498_SNP [dm6]	G	T	3.130e^-4	0.632	INTERGENIC
3R	11594493	3R_11594493_SNP [dm3] 3R_15768771_SNP [dm6]	A	C	3.133e^-4	0.632	INTERGENIC
3L	6902249	3L_6902249_SNP [dm3] 3L_6909149_SNP [dm6]	T	C	3.134e^-4	0.632	INTERGENIC
3R	21677068	3R_21677068_SNP [dm3] 3R_25851346_SNP [dm6]	T	C	3.137e^-4	0.632	UPSTREAM CG5886 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	14011624	2R_14011624_SNP [dm3] 2R_18124119_SNP [dm6]	A	G	3.137e^-4	0.632	UPSTREAM stau INTRON stau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2894083	3L_2894083_DEL [dm3] 3L_2894083_DEL [dm6]	TT	G	3.141e^-4	0.632	UPSTREAM Shab INTERGENIC
2L	3567565	2L_3567565_SNP [dm3] 2L_3567565_SNP [dm6]	G	T	3.141e^-4	0.632	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	5140988	3R_5140988_SNP [dm3] 3R_9315266_SNP [dm6]	A	T	3.146e^-4	0.632	INTRON CG8861
X	5367673	X_5367673_DEL [dm3] X_5473640_DEL [dm6]	AGTACAAATCTAAAGTGCCT...	A	3.156e^-4	0.632	INTRON SPR
2R	19339513	2R_19339513_SNP [dm3] 2R_23451990_SNP [dm6]	T	C	3.161e^-4	0.632	INTRON CG43795
2L	1616159	2L_1616159_SNP [dm3] 2L_1616159_SNP [dm6]	A	C	3.166e^-4	0.632	INTERGENIC
2R	17625813	2R_17625813_SNP [dm3] 2R_21738308_SNP [dm6]	G	T	3.167e^-4	0.632	INTERGENIC
3L	10246970	3L_10246970_SNP [dm3] 3L_10253870_SNP [dm6]	A	G	3.167e^-4	0.632	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14067657	3L_14067657_SNP [dm3] 3L_14074557_SNP [dm6]	T	A	3.168e^-4	0.632	INTRON Pex1
3L	2172379	3L_2172379_SNP [dm3] 3L_2172379_SNP [dm6]	G	A	3.171e^-4	0.632	DOWNSTREAM CG15820 EXON CR15821
2L	7418846	2L_7418846_SNP [dm3] 2L_7418846_SNP [dm6]	C	T	3.173e^-4	0.632	INTRON chm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	3285122	3L_3285122_DEL [dm3] 3L_3285122_DEL [dm6]	TCTT	A	3.178e^-4	0.632	INTRON CG12017
3L	16724471	3L_16724471_SNP [dm3] 3L_16731371_SNP [dm6]	T	G	3.179e^-4	0.632	UPSTREAM Dbp73D INTERGENIC	TF binding site mE1_TFBS_HSA
2L	11222276	2L_11222276_SNP [dm3] 2L_11222276_SNP [dm6]	T	C	3.181e^-4	0.632	INTRON ab
3L	9355242	3L_9355242_SNP [dm3] 3L_9362142_SNP [dm6]	T	C	3.188e^-4	0.632	UTR_5_PRIME CG34456 DOWNSTREAM Klp67A & 1 other
3R	3946560	3R_3946560_INS [dm3] 3R_8120838_INS [dm6]	A	ATAGAGGAGA	3.189e^-4	0.632		TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	2926734	X_2926734_SNP [dm3] X_3032701_SNP [dm6]	C	A	3.193e^-4	0.632	INTRON kirre
X	17384354	X_17384354_SNP [dm3] X_17490321_SNP [dm6]	C	A	3.194e^-4	0.632	INTRON CG43658
3L	11746478	3L_11746478_SNP [dm3] 3L_11753378_SNP [dm6]	C	A	3.198e^-4	0.632	DOWNSTREAM Gr68a INTRON CG6024
2R	9134428	2R_9134428_SNP [dm3] 2R_13246923_SNP [dm6]	A	G	3.206e^-4	0.632	NON_SYNONYMOUS_CODING Mp20	TF binding site mE1_TFBS_cad
2R	16555886	2R_16555886_SNP [dm3] 2R_20668381_SNP [dm6]	T	A	3.214e^-4	0.632	UTR_3_PRIME exu INTRON exu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	16077616	2L_16077616_MNP [dm3] 2L_16077616_MNP [dm6]	AAGA	TCCT	3.223e^-4	0.632	INTRON beat-Ia
2L	22347041	2L_22347041_SNP [dm3] 2L_22347041_SNP [dm6]	C	T	3.223e^-4	0.632	INTRON CG17018	transposable element FlyBase
X	8514729	X_8514729_SNP [dm3] X_8620696_SNP [dm6]	A	G	3.228e^-4	0.632	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4948822	3R_4948822_SNP [dm3] 3R_9123100_SNP [dm6]	A	G	3.235e^-4	0.632	INTRON pum
3R	4948823	3R_4948823_SNP [dm3] 3R_9123101_SNP [dm6]	T	A	3.235e^-4	0.632	INTRON pum
3R	10746491	3R_10746491_SNP [dm3] 3R_14920769_SNP [dm6]	C	A	3.237e^-4	0.632	SPLICE_SITE_REGION Sdr INTRON Sdr
X	12021512	X_12021512_SNP [dm3] X_12127479_SNP [dm6]	A	T	3.242e^-4	0.632	UPSTREAM Ten-a INTRON Ten-a
2L	7558658	2L_7558658_SNP [dm3] 2L_7558658_SNP [dm6]	C	G	3.242e^-4	0.632	INTRON RapGAP1
2L	1542425	2L_1542425_SNP [dm3] 2L_1542425_SNP [dm6]	G	C	3.243e^-4	0.632	INTERGENIC
2L	7963140	2L_7963140_SNP [dm3] 2L_7963140_SNP [dm6]	A	G	3.243e^-4	0.632	INTRON Snoo
2R	11080877	2R_11080877_SNP [dm3] 2R_15193372_SNP [dm6]	C	T	3.251e^-4	0.632	UPSTREAM Sfp51E DOWNSTREAM CG43829 INTERGENIC
3L	7482547	3L_7482547_SNP [dm3] 3L_7489447_SNP [dm6]	C	A	3.252e^-4	0.632	INTERGENIC
3R	13198516	3R_13198516_SNP [dm3] 3R_17372794_SNP [dm6]	G	A	3.254e^-4	0.632	INTERGENIC
3R	19479464	3R_19479464_SNP [dm3] 3R_23653742_SNP [dm6]	A	T	3.255e^-4	0.632	UTR_5_PRIME CG31145
3L	11809341	3L_11809341_SNP [dm3] 3L_11816241_SNP [dm6]	C	T	3.260e^-4	0.632	NON_SYNONYMOUS_CODING CG14130 DOWNSTREAM CG5946	TF binding site mE1_TFBS_sens
3R	21491356	3R_21491356_INS [dm3] 3R_25665634_INS [dm6]	C	CTTTAAAACTC...	3.264e^-4	0.632	UTR_3_PRIME RASSF8 UPSTREAM Lgr3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	16101621	2L_16101621_SNP [dm3] 2L_16101621_SNP [dm6]	C	T	3.265e^-4	0.632	INTERGENIC
X	6103021	X_6103021_SNP [dm3] X_6208988_SNP [dm6]	T	C	3.273e^-4	0.632	INTERGENIC
3L	972039	3L_972039_SNP [dm3] 3L_972039_SNP [dm6]	C	A	3.280e^-4	0.632	INTRON Glut1
3R	22409826	3R_22409826_DEL [dm3] 3R_26584104_DEL [dm6]	TT	T	3.280e^-4	0.632	DOWNSTREAM scrib INTRON scrib
2L	21906167	2L_21906167_SNP [dm3] 2L_21906167_SNP [dm6]	A	T	3.285e^-4	0.632	UPSTREAM CG1428 INTERGENIC
3L	7503677	3L_7503677_SNP [dm3] 3L_7510577_SNP [dm6]	T	C	3.290e^-4	0.632	UPSTREAM CG7546 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	6928996	3R_6928996_SNP [dm3] 3R_11103274_SNP [dm6]	G	A	3.295e^-4	0.632	INTERGENIC
X	15291616	X_15291616_SNP [dm3] X_15397583_SNP [dm6]	G	A	3.296e^-4	0.632	SPLICE_SITE_REGION Cngl INTRON Cngl	TF binding site mE1_TFBS_chinmo
3R	19458947	3R_19458947_SNP [dm3] 3R_23633225_SNP [dm6]	G	A	3.299e^-4	0.632	INTRON CG31145	TF binding site BDTNP1_TFBS_twi
3L	4707994	3L_4707994_SNP [dm3] 3L_4707994_SNP [dm6]	T	C	3.300e^-4	0.632	INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10861556	3L_10861556_SNP [dm3] 3L_10868456_SNP [dm6]	A	T	3.300e^-4	0.632	INTRON tna
3R	26050309	3R_26050309_SNP [dm3] 3R_30224587_SNP [dm6]	A	T	3.303e^-4	0.632	INTERGENIC
2L	7963090	2L_7963090_SNP [dm3] 2L_7963090_SNP [dm6]	A	T	3.319e^-4	0.632	INTRON Snoo
3R	21900446	3R_21900446_SNP [dm3] 3R_26074724_SNP [dm6]	G	T	3.322e^-4	0.632	INTERGENIC
3L	1645300	3L_1645300_SNP [dm3] 3L_1645300_SNP [dm6]	A	T	3.324e^-4	0.632	UPSTREAM CG13919 & 1 other DOWNSTREAM CG17249 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1645305	3L_1645305_SNP [dm3] 3L_1645305_SNP [dm6]	G	C	3.324e^-4	0.632	UPSTREAM CG13919 & 1 other DOWNSTREAM CG17249 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1645306	3L_1645306_SNP [dm3] 3L_1645306_SNP [dm6]	C	T	3.324e^-4	0.632	UPSTREAM CG13919 & 1 other DOWNSTREAM CG17249 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1645311	3L_1645311_DEL [dm3] 3L_1645311_DEL [dm6]	CA	C	3.324e^-4	0.632	UPSTREAM CG13919 & 1 other DOWNSTREAM CG17249 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	16151640	2R_16151640_SNP [dm3] 2R_20264135_SNP [dm6]	T	A	3.325e^-4	0.632	UPSTREAM plu & 1 other DOWNSTREAM CR43812 INTRON RpS18	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	17078216	X_17078216_SNP [dm3] X_17184183_SNP [dm6]	C	T	3.327e^-4	0.632	UPSTREAM CR44026 INTRON baz
2L	14733735	2L_14733735_SNP [dm3] 2L_14733735_SNP [dm6]	T	G	3.339e^-4	0.633	UPSTREAM CR44857 INTERGENIC	TF binding site mE1_TFBS_inv
2L	4795906	2L_4795906_SNP [dm3] 2L_4795906_SNP [dm6]	G	A	3.346e^-4	0.633	SYNONYMOUS_CODING CG3294 DOWNSTREAM Clect27
3R	12072773	3R_12072773_SNP [dm3] 3R_16247051_SNP [dm6]	T	G	3.346e^-4	0.633	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	15386274	2L_15386274_SNP [dm3] 2L_15386274_SNP [dm6]	A	T	3.348e^-4	0.633	INTERGENIC
2L	15386277	2L_15386277_INS [dm3] 2L_15386277_INS [dm6]	A	AAC	3.348e^-4	0.633	INTERGENIC
3L	4819114	3L_4819114_SNP [dm3] 3L_4819114_SNP [dm6]	C	G	3.355e^-4	0.633	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_sens
2L	8436524	2L_8436524_SNP [dm3] 2L_8436524_SNP [dm6]	C	T	3.364e^-4	0.634	NON_SYNONYMOUS_CODING D12 UPSTREAM Chrac-14	TF binding site mE1_TFBS_sens
3R	19458882	3R_19458882_SNP [dm3] 3R_23633160_SNP [dm6]	A	G	3.371e^-4	0.635	INTRON CG31145	TF binding site BDTNP1_TFBS_twi
2R	20524679	2R_20524679_SNP [dm3] 2R_24637156_SNP [dm6]	T	C	3.392e^-4	0.637	INTRON CG13594	TF binding site mE1_TFBS_chinmo
2L	6381543	2L_6381543_SNP [dm3] 2L_6381543_SNP [dm6]	G	A	3.398e^-4	0.637	SYNONYMOUS_CODING CG9507 INTRON CG42368	TF binding site mE1_TFBS_chinmo
2L	21898854	2L_21898854_SNP [dm3] 2L_21898854_SNP [dm6]	G	T	3.402e^-4	0.637	UPSTREAM CG11629 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	16294433	2R_16294433_SNP [dm3] 2R_20406928_SNP [dm6]	A	G	3.402e^-4	0.637	INTERGENIC
2R	14342756	2R_14342756_SNP [dm3] 2R_18455251_SNP [dm6]	A	G	3.403e^-4	0.637	UPSTREAM CG17669 INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.093e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.007892

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	12.3755	0.0021

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2356 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	3271914	3R_3271914_SNP [dm3] 3R_7446192_SNP [dm6]	G	T	4.922e^-7	0.722	INTERGENIC
2L	9212436	2L_9212436_SNP [dm3] 2L_9212436_SNP [dm6]	G	T	1.107e^-6	0.722	INTRON tai
3R	16987333	3R_16987333_SNP [dm3] 3R_21161611_SNP [dm6]	C	A	2.155e^-6	0.722	UPSTREAM CG10824 INTRON SNF4Agamma
2R	10364096	2R_10364096_SNP [dm3] 2R_14476591_SNP [dm6]	A	C	2.327e^-6	0.722	EXON CR44462	TF binding site mE1_TFBS_sens
3R	16989113	3R_16989113_SNP [dm3] 3R_21163391_SNP [dm6]	A	G	2.632e^-6	0.722	UPSTREAM CG5810 INTRON SNF4Agamma
3L	15307297	3L_15307297_SNP [dm3] 3L_15314197_SNP [dm6]	T	C	2.798e^-6	0.722	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	16989117	3R_16989117_SNP [dm3] 3R_21163395_SNP [dm6]	A	T	3.233e^-6	0.722	UPSTREAM CG5810 INTRON SNF4Agamma
2R	5079848	2R_5079848_SNP [dm3] 2R_9192343_SNP [dm6]	G	T	3.286e^-6	0.722	UPSTREAM CG8026 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8052454	2L_8052454_SNP [dm3] 2L_8052454_SNP [dm6]	G	A	3.464e^-6	0.722	SYNONYMOUS_CODING CG7466
3R	15299750	3R_15299750_SNP [dm3] 3R_19474028_SNP [dm6]	T	A	4.311e^-6	0.744	INTRON Dys
2L	6514429	2L_6514429_SNP [dm3] 2L_6514429_SNP [dm6]	G	C	4.734e^-6	0.744	INTRON CG31637
2L	16105417	2L_16105417_SNP [dm3] 2L_16105417_SNP [dm6]	A	T	4.902e^-6	0.744	INTERGENIC
3L	15307036	3L_15307036_SNP [dm3] 3L_15313936_SNP [dm6]	C	G	5.161e^-6	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	12294024	2L_12294024_SNP [dm3] 2L_12294024_SNP [dm6]	C	G	5.839e^-6	0.758	INTRON aret
3R	19570657	3R_19570657_SNP [dm3] 3R_23744935_SNP [dm6]	A	G	6.827e^-6	0.758	INTRON Hmgcr
2L	6100946	2L_6100946_SNP [dm3] 2L_6100946_SNP [dm6]	G	A	7.003e^-6	0.758	INTRON stai	TF binding site BDTNP1_TFBS_dl
2L	16105423	2L_16105423_SNP [dm3] 2L_16105423_SNP [dm6]	T	C	7.853e^-6	0.758	INTERGENIC
2L	13425465	2L_13425465_SNP [dm3] 2L_13425465_SNP [dm6]	G	A	8.000e^-6	0.758	INTRON CG42784
2L	12293941	2L_12293941_SNP [dm3] 2L_12293941_SNP [dm6]	T	C	9.756e^-6	0.758	INTRON aret
3L	7485366	3L_7485366_SNP [dm3] 3L_7492266_SNP [dm6]	A	T	1.137e^-5	0.758	NON_SYNONYMOUS_CODING Cyp316a1
2R	10344070	2R_10344070_SNP [dm3] 2R_14456565_SNP [dm6]	G	C	1.184e^-5	0.758	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14150745	3R_14150745_SNP [dm3] 3R_18325023_SNP [dm6]	T	A	1.293e^-5	0.758	INTRON CG31235
3L	11147724	3L_11147724_SNP [dm3] 3L_11154624_SNP [dm6]	G	A	1.345e^-5	0.758	INTRON CG32082
3R	24728426	3R_24728426_SNP [dm3] 3R_28902704_SNP [dm6]	T	C	1.346e^-5	0.758	UTR_5_PRIME Doa UPSTREAM Doa INTRON Doa
3R	15544913	3R_15544913_SNP [dm3] 3R_19719191_SNP [dm6]	G	T	1.354e^-5	0.758	INTERGENIC
3L	806506	3L_806506_SNP [dm3] 3L_806506_SNP [dm6]	T	A	1.564e^-5	0.758	INTERGENIC
2L	18353658	2L_18353658_SNP [dm3] 2L_18353658_SNP [dm6]	A	T	1.645e^-5	0.758	INTRON Fas3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14734121	2L_14734121_SNP [dm3] 2L_14734121_SNP [dm6]	A	G	1.687e^-5	0.758	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10344067	2R_10344067_SNP [dm3] 2R_14456562_SNP [dm6]	G	C	1.706e^-5	0.758	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19778785	2R_19778785_SNP [dm3] 2R_23891262_SNP [dm6]	T	G	1.936e^-5	0.758	SYNONYMOUS_CODING DNA-ligI UPSTREAM Dcp1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12274966	2L_12274966_SNP [dm3] 2L_12274966_SNP [dm6]	G	T	1.984e^-5	0.758	INTRON aret
2L	21905489	2L_21905489_DEL [dm3] 2L_21905489_DEL [dm6]	TT	T	2.037e^-5	0.758	UPSTREAM CG1428 INTERGENIC
3L	16726691	3L_16726691_DEL [dm3] 3L_16733591_DEL [dm6]	CAAC	C	2.097e^-5	0.758	UTR_5_PRIME CG9701
2R	19614706	2R_19614706_SNP [dm3] 2R_23727183_SNP [dm6]	G	T	2.102e^-5	0.758	INTRON Sesn
2L	8010038	2L_8010038_SNP [dm3] 2L_8010038_SNP [dm6]	G	A	2.144e^-5	0.758	NON_SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2R	16034766	2R_16034766_SNP [dm3] 2R_20147261_SNP [dm6]	G	A	2.206e^-5	0.758	DOWNSTREAM CG11041 INTERGENIC
2R	19822999	2R_19822999_SNP [dm3] 2R_23935476_SNP [dm6]	G	T	2.208e^-5	0.758	INTRON Ca-P60A
3R	16985358	3R_16985358_SNP [dm3] 3R_21159636_SNP [dm6]	G	A	2.276e^-5	0.758	SYNONYMOUS_CODING CG10824 INTRON SNF4Agamma
3L	5692639	3L_5692639_SNP [dm3] 3L_5699539_SNP [dm6]	C	G	2.299e^-5	0.758	INTRON sif	TF binding site mE1_TFBS_chinmo
3L	12369802	3L_12369802_SNP [dm3] 3L_12376702_SNP [dm6]	C	A	2.425e^-5	0.758	INTRON Ncc69
X	5066914	X_5066914_SNP [dm3] X_5172881_SNP [dm6]	T	C	2.593e^-5	0.758	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	21906150	2L_21906150_DEL [dm3] 2L_21906150_DEL [dm6]	CACCTCTG	C	2.600e^-5	0.758	UPSTREAM CG1428 INTERGENIC
2L	3881336	2L_3881336_SNP [dm3] 2L_3881336_SNP [dm6]	A	C	2.609e^-5	0.758	INTRON capu	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	3152393	3R_3152393_SNP [dm3] 3R_7326671_SNP [dm6]	C	T	2.678e^-5	0.758	DOWNSTREAM CG44335 EXON CR44336	TF binding site mE1_TFBS_cad
2L	6100966	2L_6100966_SNP [dm3] 2L_6100966_SNP [dm6]	C	A	2.727e^-5	0.758	INTRON stai	TF binding site BDTNP1_TFBS_dl
2L	21906159	2L_21906159_DEL [dm3] 2L_21906159_DEL [dm6]	TCGACA	T	2.747e^-5	0.758	UPSTREAM CG1428 INTERGENIC
X	12021418	X_12021418_INS [dm3] X_12127385_INS [dm6]	A	AAA	2.796e^-5	0.758	UPSTREAM Ten-a INTRON Ten-a
3R	16986429	3R_16986429_SNP [dm3] 3R_21160707_SNP [dm6]	T	C	2.851e^-5	0.758	SYNONYMOUS_CODING CG10824 INTRON SNF4Agamma	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16379475	3L_16379475_SNP [dm3] 3L_16386375_SNP [dm6]	T	C	3.024e^-5	0.758	UTR_5_PRIME RAF2 UPSTREAM CG4729	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10344148	2R_10344148_SNP [dm3] 2R_14456643_SNP [dm6]	C	T	3.087e^-5	0.758	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17114489	3L_17114489_SNP [dm3] 3L_17121389_SNP [dm6]	A	T	3.242e^-5	0.758	INTRON Rbp6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_inv
2L	5181776	2L_5181776_SNP [dm3] 2L_5181776_SNP [dm6]	A	G	3.322e^-5	0.758	SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	15306825	3L_15306825_SNP [dm3] 3L_15313725_SNP [dm6]	G	T	3.428e^-5	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	16985364	3R_16985364_SNP [dm3] 3R_21159642_SNP [dm6]	G	T	3.485e^-5	0.758	SYNONYMOUS_CODING CG10824 INTRON SNF4Agamma
2L	12698371	2L_12698371_SNP [dm3] 2L_12698371_SNP [dm6]	C	T	3.516e^-5	0.758	SYNONYMOUS_CODING PICK1 DOWNSTREAM CG17036	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19027934	2L_19027934_SNP [dm3] 2L_19027934_SNP [dm6]	T	C	3.576e^-5	0.758	UTR_5_PRIME Side
3L	492694	3L_492694_SNP [dm3] 3L_492694_SNP [dm6]	T	C	3.587e^-5	0.758	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	19488616	3R_19488616_SNP [dm3] 3R_23662894_SNP [dm6]	G	T	3.683e^-5	0.758	INTRON CG31145	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	13074375	2R_13074375_DEL [dm3] 2R_17186870_DEL [dm6]	GG	G	3.699e^-5	0.758	DOWNSTREAM CR44388 INTERGENIC
2R	10344131	2R_10344131_SNP [dm3] 2R_14456626_SNP [dm6]	A	G	3.758e^-5	0.758	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3156949	3L_3156949_SNP [dm3] 3L_3156949_SNP [dm6]	G	A	3.787e^-5	0.758	SYNONYMOUS_CODING BtbVII	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	806508	3L_806508_SNP [dm3] 3L_806508_SNP [dm6]	A	C	3.811e^-5	0.758	INTERGENIC
3R	4825613	3R_4825613_SNP [dm3] 3R_8999891_SNP [dm6]	G	A	3.876e^-5	0.758	INTRON CG31100
2L	8006802	2L_8006802_SNP [dm3] 2L_8006802_SNP [dm6]	T	C	3.927e^-5	0.758	NON_SYNONYMOUS_CODING Spn28Dc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10136900	3R_10136900_SNP [dm3] 3R_14311178_SNP [dm6]	G	T	3.937e^-5	0.758	DOWNSTREAM RpII15 INTRON CG31321
3R	3140798	3R_3140798_INS [dm3] 3R_7315076_INS [dm6]	T	TCGT	3.943e^-5	0.758	DOWNSTREAM CG10029 INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	8440789	2R_8440789_SNP [dm3] 2R_12553284_SNP [dm6]	G	A	3.966e^-5	0.758	INTRON fra
3R	3139399	3R_3139399_SNP [dm3] 3R_7313677_SNP [dm6]	A	T	4.009e^-5	0.758	UPSTREAM CR44334 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	16215223	3L_16215223_SNP [dm3] 3L_16222123_SNP [dm6]	A	G	4.060e^-5	0.758	DOWNSTREAM tRNA:CR32153 INTERGENIC
3R	3140806	3R_3140806_SNP [dm3] 3R_7315084_SNP [dm6]	T	C	4.129e^-5	0.758	DOWNSTREAM CG10029 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	11017115	3L_11017115_SNP [dm3] 3L_11024015_SNP [dm6]	C	A	4.165e^-5	0.758	SYNONYMOUS_CODING Fad2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12805398	2L_12805398_SNP [dm3] 2L_12805398_SNP [dm6]	G	C	4.206e^-5	0.758	INTERGENIC
3R	3271111	3R_3271111_SNP [dm3] 3R_7445389_SNP [dm6]	C	T	4.350e^-5	0.758	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	3269072	3R_3269072_DEL [dm3] 3R_7443350_DEL [dm6]	TATCAT	T	4.359e^-5	0.758	INTERGENIC
3L	8915111	3L_8915111_SNP [dm3] 3L_8922011_SNP [dm6]	T	A	4.464e^-5	0.758	INTRON Tsp66E
3L	12282655	3L_12282655_SNP [dm3] 3L_12289555_SNP [dm6]	G	T	4.581e^-5	0.758	EXON CR45658
3R	1194260	3R_1194260_DEL [dm3] 3R_5368538_DEL [dm6]	CT	C	4.582e^-5	0.758	UPSTREAM Cerk EXON CR44103	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	15701029	3L_15701029_SNP [dm3] 3L_15707929_SNP [dm6]	G	A	4.600e^-5	0.758	INTERGENIC
3R	3271090	3R_3271090_SNP [dm3] 3R_7445368_SNP [dm6]	G	A	4.647e^-5	0.758	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16076890	2L_16076890_SNP [dm3] 2L_16076890_SNP [dm6]	A	T	4.652e^-5	0.758	INTRON beat-Ia
3L	18277762	3L_18277762_SNP [dm3] 3L_18284662_SNP [dm6]	T	C	4.668e^-5	0.758	INTERGENIC
2L	21795611	2L_21795611_SNP [dm3] 2L_21795611_SNP [dm6]	C	G	4.671e^-5	0.758	UPSTREAM CG31612 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
2R	17482389	2R_17482389_SNP [dm3] 2R_21594884_SNP [dm6]	C	A	4.684e^-5	0.758	INTERGENIC	TF binding site mE1_TFBS_cad
3L	8915106	3L_8915106_SNP [dm3] 3L_8922006_SNP [dm6]	A	G	4.733e^-5	0.758	INTRON Tsp66E
3L	7484565	3L_7484565_SNP [dm3] 3L_7491465_SNP [dm6]	G	C	4.734e^-5	0.758	UPSTREAM Cyp316a1 INTERGENIC
2R	10344115	2R_10344115_SNP [dm3] 2R_14456610_SNP [dm6]	C	G	4.889e^-5	0.758	INTRON Oaz	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2802999	2L_2802999_SNP [dm3] 2L_2802999_SNP [dm6]	C	T	4.925e^-5	0.758	INTERGENIC
3R	16986342	3R_16986342_SNP [dm3] 3R_21160620_SNP [dm6]	A	G	4.953e^-5	0.758	SYNONYMOUS_CODING CG10824 INTRON SNF4Agamma	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12805656	2L_12805656_SNP [dm3] 2L_12805656_SNP [dm6]	T	C	5.002e^-5	0.758	INTERGENIC
2L	4382305	2L_4382305_SNP [dm3] 2L_4382305_SNP [dm6]	T	G	5.002e^-5	0.758	NON_SYNONYMOUS_CODING CG17612 DOWNSTREAM CG3338	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	12294002	2L_12294002_SNP [dm3] 2L_12294002_SNP [dm6]	C	A	5.031e^-5	0.758	INTRON aret
3R	14150728	3R_14150728_SNP [dm3] 3R_18325006_SNP [dm6]	A	T	5.038e^-5	0.758	INTRON CG31235
2L	12294007	2L_12294007_SNP [dm3] 2L_12294007_SNP [dm6]	A	C	5.047e^-5	0.758	INTRON aret
2L	13062431	2L_13062431_SNP [dm3] 2L_13062431_SNP [dm6]	G	A	5.125e^-5	0.758	INTERGENIC
3L	4840590	3L_4840590_SNP [dm3] 3L_4840590_SNP [dm6]	G	C	5.183e^-5	0.758	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	1319951	3L_1319951_SNP [dm3] 3L_1319951_SNP [dm6]	G	A	5.185e^-5	0.758	INTRON Myo61F
3L	18277824	3L_18277824_SNP [dm3] 3L_18284724_SNP [dm6]	A	C	5.194e^-5	0.758	INTERGENIC
3L	17955262	3L_17955262_SNP [dm3] 3L_17962162_SNP [dm6]	C	T	5.194e^-5	0.758	UPSTREAM Eip75B INTRON Eip75B	TF binding site mE1_TFBS_Trl
2L	16082885	2L_16082885_SNP [dm3] 2L_16082885_SNP [dm6]	A	T	5.218e^-5	0.758	INTERGENIC
2L	12037864	2L_12037864_SNP [dm3] 2L_12037864_SNP [dm6]	C	T	5.229e^-5	0.758	SYNONYMOUS_CODING Tom70 DOWNSTREAM CG6766	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12806812	2L_12806812_SNP [dm3] 2L_12806812_SNP [dm6]	A	G	5.260e^-5	0.758	DOWNSTREAM CR43818 INTERGENIC
3L	18277834	3L_18277834_SNP [dm3] 3L_18284734_SNP [dm6]	A	T	5.268e^-5	0.758	INTERGENIC
3L	18277835	3L_18277835_SNP [dm3] 3L_18284735_SNP [dm6]	T	A	5.268e^-5	0.758	INTERGENIC
3L	18277848	3L_18277848_SNP [dm3] 3L_18284748_SNP [dm6]	A	T	5.268e^-5	0.758	INTERGENIC
3R	3148369	3R_3148369_SNP [dm3] 3R_7322647_SNP [dm6]	C	T	5.295e^-5	0.758	INTERGENIC
3R	10942451	3R_10942451_SNP [dm3] 3R_15116729_SNP [dm6]	C	A	5.306e^-5	0.758	INTRON CG42788	TF binding site mE1_TFBS_sens
2R	10344098	2R_10344098_SNP [dm3] 2R_14456593_SNP [dm6]	A	C	5.326e^-5	0.758	INTRON Oaz	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21116655	X_21116655_SNP [dm3] X_21245628_SNP [dm6]	T	A	5.331e^-5	0.758	INTRON CG32521
2R	16361222	2R_16361222_SNP [dm3] 2R_20473717_SNP [dm6]	T	A	5.343e^-5	0.758	INTRON CG12484
3L	19311457	3L_19311457_SNP [dm3] 3L_19318357_SNP [dm6]	T	C	5.369e^-5	0.758	INTRON pip	TF binding site mE1_TFBS_cad
2L	16105326	2L_16105326_SNP [dm3] 2L_16105326_SNP [dm6]	A	G	5.370e^-5	0.758	INTERGENIC
2R	13074366	2R_13074366_DEL [dm3] 2R_17186861_DEL [dm6]	GGAG	G	5.404e^-5	0.758	DOWNSTREAM CR44388 INTERGENIC
3L	20009415	3L_20009415_SNP [dm3] 3L_20016315_SNP [dm6]	G	C	5.411e^-5	0.758	NON_SYNONYMOUS_CODING kug
3R	12954762	3R_12954762_SNP [dm3] 3R_17129040_SNP [dm6]	C	T	5.444e^-5	0.758	SYNONYMOUS_CODING CG31265 DOWNSTREAM CG31269 & 1 other
3R	26963968	3R_26963968_SNP [dm3] 3R_31138246_SNP [dm6]	A	C	5.460e^-5	0.758	INTRON Gycbeta100B
3L	4018943	3L_4018943_SNP [dm3] 3L_4018943_SNP [dm6]	A	T	5.460e^-5	0.758	UTR_5_PRIME fd64A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3851599	2L_3851599_SNP [dm3] 2L_3851599_SNP [dm6]	A	G	5.465e^-5	0.758	UPSTREAM CR45451 INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	26817196	3R_26817196_SNP [dm3] 3R_30991474_SNP [dm6]	T	A	5.467e^-5	0.758	DOWNSTREAM CG31007 INTRON 5-HT7
3L	14370112	3L_14370112_SNP [dm3] 3L_14377012_SNP [dm6]	C	A	5.468e^-5	0.758	INTERGENIC
3L	2291243	3L_2291243_SNP [dm3] 3L_2291243_SNP [dm6]	T	C	5.506e^-5	0.758	INTRON MsR2
X	1075849	X_1075849_INS [dm3] X_1181816_INS [dm6]	C	CC	5.519e^-5	0.758	UPSTREAM CG14627 DOWNSTREAM CG11379 INTRON CG14627	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	15306926	3L_15306926_SNP [dm3] 3L_15313826_SNP [dm6]	T	G	5.566e^-5	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	12154041	2L_12154041_SNP [dm3] 2L_12154041_SNP [dm6]	A	T	5.758e^-5	0.758	INTRON CG31760
2R	19745704	2R_19745704_SNP [dm3] 2R_23858181_SNP [dm6]	A	T	5.760e^-5	0.758	SYNONYMOUS_CODING bgcn DOWNSTREAM TBPH	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	21116656	X_21116656_SNP [dm3] X_21245629_SNP [dm6]	G	A	5.774e^-5	0.758	INTRON CG32521
2L	21913716	2L_21913716_SNP [dm3] 2L_21913716_SNP [dm6]	A	T	5.776e^-5	0.758	DOWNSTREAM CG31600 INTERGENIC
X	5206424	X_5206424_SNP [dm3] X_5312391_SNP [dm6]	C	T	5.781e^-5	0.758	UTR_5_PRIME dhd UPSTREAM TrxT & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18652088	2R_18652088_SNP [dm3] 2R_22764583_SNP [dm6]	G	T	5.799e^-5	0.758	NON_SYNONYMOUS_CODING CG13527 INTRON CG42260
2L	12805608	2L_12805608_SNP [dm3] 2L_12805608_SNP [dm6]	G	T	5.853e^-5	0.758	INTERGENIC
2L	12805618	2L_12805618_SNP [dm3] 2L_12805618_SNP [dm6]	C	T	5.853e^-5	0.758	INTERGENIC
2L	12805619	2L_12805619_SNP [dm3] 2L_12805619_SNP [dm6]	G	A	5.853e^-5	0.758	INTERGENIC
3L	11526287	3L_11526287_SNP [dm3] 3L_11533187_SNP [dm6]	T	G	6.065e^-5	0.758	INTRON Mob2
2R	17676052	2R_17676052_SNP [dm3] 2R_21788547_SNP [dm6]	A	C	6.070e^-5	0.758	INTERGENIC
3L	4840591	3L_4840591_DEL [dm3] 3L_4840591_DEL [dm6]	GG	G	6.090e^-5	0.758	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	16080531	2L_16080531_SNP [dm3] 2L_16080531_SNP [dm6]	T	A	6.093e^-5	0.758	SYNONYMOUS_CODING beat-Ia	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16101621	2L_16101621_SNP [dm3] 2L_16101621_SNP [dm6]	C	T	6.097e^-5	0.758	INTERGENIC
3L	9725290	3L_9725290_SNP [dm3] 3L_9732190_SNP [dm6]	A	G	6.227e^-5	0.758	SYNONYMOUS_CODING CG6749 DOWNSTREAM ATPsyn-b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15902342	2R_15902342_SNP [dm3] 2R_20014837_SNP [dm6]	A	G	6.324e^-5	0.758	DOWNSTREAM CR44629 INTERGENIC
3L	1647215	3L_1647215_SNP [dm3] 3L_1647215_SNP [dm6]	T	C	6.342e^-5	0.758	SYNONYMOUS_CODING CG17249 UPSTREAM Bro	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	25996118	3R_25996118_SNP [dm3] 3R_30170396_SNP [dm6]	C	T	6.346e^-5	0.758	SYNONYMOUS_CODING CG31028
3L	10695127	3L_10695127_SNP [dm3] 3L_10702027_SNP [dm6]	T	C	6.352e^-5	0.758	INTERGENIC
X	901392	X_901392_SNP [dm3] X_1007359_SNP [dm6]	A	C	6.368e^-5	0.758	INTERGENIC
2R	13473135	2R_13473135_SNP [dm3] 2R_17585630_SNP [dm6]	T	A	6.450e^-5	0.758	UTR_3_PRIME CG14483 UPSTREAM CR45275 DOWNSTREAM CG14483 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	13473151	2R_13473151_SNP [dm3] 2R_17585646_SNP [dm6]	A	T	6.450e^-5	0.758	UTR_3_PRIME CG14483 UPSTREAM CR45275 DOWNSTREAM RhoGAP54D	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	7146622	2R_7146622_SNP [dm3] 2R_11259117_SNP [dm6]	G	T	6.480e^-5	0.758	UTR_3_PRIME Cpr47Ec DOWNSTREAM CG13223
2L	21831184	2L_21831184_SNP [dm3] 2L_21831184_SNP [dm6]	G	A	6.605e^-5	0.758	INTRON tsh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	467488	3R_467488_SNP [dm3] 3R_4641766_SNP [dm6]	A	G	6.606e^-5	0.758	UPSTREAM MED31 & 2 others INTRON CG9775	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	908874	3R_908874_DEL [dm3] 3R_5083152_DEL [dm6]	GCC	T	6.624e^-5	0.758	UTR_3_PRIME corto DOWNSTREAM corto
2L	3796517	2L_3796517_SNP [dm3] 2L_3796517_SNP [dm6]	T	C	6.677e^-5	0.758	SYNONYMOUS_CODING CG3921
3L	6557131	3L_6557131_SNP [dm3] 3L_6564031_SNP [dm6]	C	T	6.679e^-5	0.758	SYNONYMOUS_CODING jv INTRON CG18769	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7701191	2L_7701191_SNP [dm3] 2L_7701191_SNP [dm6]	G	T	6.693e^-5	0.758	INTRON Tep2	TF binding site mE1_TFBS_Trl
2L	21810115	2L_21810115_SNP [dm3] 2L_21810115_SNP [dm6]	A	G	6.702e^-5	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16105378	2L_16105378_SNP [dm3] 2L_16105378_SNP [dm6]	T	C	6.824e^-5	0.758	INTERGENIC
2R	19069092	2R_19069092_INS [dm3] 2R_23181569_INS [dm6]	G	GCTGT	6.846e^-5	0.758	INTRON CG34371	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19790734	X_19790734_SNP [dm3] X_19896701_SNP [dm6]	C	A	6.904e^-5	0.758	INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	7484520	3L_7484520_SNP [dm3] 3L_7491420_SNP [dm6]	T	A	6.916e^-5	0.758	UPSTREAM Cyp316a1 INTERGENIC
2R	10344121	2R_10344121_SNP [dm3] 2R_14456616_SNP [dm6]	T	C	6.940e^-5	0.758	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17953345	3L_17953345_SNP [dm3] 3L_17960245_SNP [dm6]	A	G	6.985e^-5	0.758	INTRON Eip75B
2R	11080898	2R_11080898_SNP [dm3] 2R_15193393_SNP [dm6]	T	G	7.068e^-5	0.758	UPSTREAM Sfp51E DOWNSTREAM CG43829 INTERGENIC
3L	17955117	3L_17955117_SNP [dm3] 3L_17962017_SNP [dm6]	T	C	7.072e^-5	0.758	UPSTREAM Eip75B INTRON Eip75B
3R	20997240	3R_20997240_SNP [dm3] 3R_25171518_SNP [dm6]	A	G	7.109e^-5	0.758	SYNONYMOUS_CODING lobo	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15701005	3L_15701005_SNP [dm3] 3L_15707905_SNP [dm6]	A	T	7.141e^-5	0.758	INTERGENIC
X	21116859	X_21116859_SNP [dm3] X_21245832_SNP [dm6]	G	A	7.144e^-5	0.758	INTRON CG32521
3R	3268396	3R_3268396_SNP [dm3] 3R_7442674_SNP [dm6]	T	A	7.262e^-5	0.758	DOWNSTREAM CG14598 INTERGENIC
3L	1646534	3L_1646534_SNP [dm3] 3L_1646534_SNP [dm6]	A	G	7.312e^-5	0.758	SYNONYMOUS_CODING CG17249 DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	21866518	2L_21866518_SNP [dm3] 2L_21866518_SNP [dm6]	A	G	7.324e^-5	0.758	UPSTREAM CR44917 & 1 other DOWNSTREAM CR44919 INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13554710	3L_13554710_SNP [dm3] 3L_13561610_SNP [dm6]	A	G	7.327e^-5	0.758	INTRON bru-3	TF binding site mE1_TFBS_chinmo
3L	5829494	3L_5829494_SNP [dm3] 3L_5836394_SNP [dm6]	T	A	7.477e^-5	0.758	INTRON vn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA
3L	4841147	3L_4841147_SNP [dm3] 3L_4841147_SNP [dm6]	C	A	7.523e^-5	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	4846361	3L_4846361_SNP [dm3] 3L_4846361_SNP [dm6]	G	A	7.562e^-5	0.758	INTERGENIC
X	19788585	X_19788585_SNP [dm3] X_19894552_SNP [dm6]	A	T	7.591e^-5	0.758	INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	16817443	2R_16817443_DEL [dm3] 2R_20929938_DEL [dm6]	GCTAGGGGATTG...	G	7.697e^-5	0.758	INTRON Rx
2R	19674425	2R_19674425_SNP [dm3] 2R_23786902_SNP [dm6]	G	A	7.716e^-5	0.758	INTRON CG9850
3L	5605300	3L_5605300_SNP [dm3] 3L_5612200_SNP [dm6]	A	C	7.736e^-5	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	3134897	2R_3134897_SNP [dm3] 2R_7247392_SNP [dm6]	T	G	7.764e^-5	0.758	INTERGENIC	TF binding site mE1_TFBS_cad
2L	8325810	2L_8325810_SNP [dm3] 2L_8325810_SNP [dm6]	A	G	7.803e^-5	0.758	UPSTREAM CG7781 INTERGENIC
3L	16745427	3L_16745427_SNP [dm3] 3L_16752327_SNP [dm6]	C	A	7.803e^-5	0.758	INTERGENIC
2L	21855687	2L_21855687_SNP [dm3] 2L_21855687_SNP [dm6]	G	T	7.869e^-5	0.758	INTRON CR44917	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10339787	2R_10339787_SNP [dm3] 2R_14452282_SNP [dm6]	G	C	7.869e^-5	0.758	INTRON Oaz	TF binding site mE1_TFBS_chinmo
3L	7484626	3L_7484626_SNP [dm3] 3L_7491526_SNP [dm6]	G	T	7.962e^-5	0.758	UPSTREAM Cyp316a1 INTERGENIC
2L	5181668	2L_5181668_DEL [dm3] 2L_5181668_DEL [dm6]	GGCG	G	8.008e^-5	0.758	CODON_DELETION Msp300 INTRON Msp300	TF binding site mE1_TFBS_HSA
3R	11585531	3R_11585531_INS [dm3] 3R_15759809_INS [dm6]	A	AATCCCCCA	8.012e^-5	0.758	INTERGENIC
3L	15307322	3L_15307322_SNP [dm3] 3L_15314222_SNP [dm6]	C	T	8.033e^-5	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	10344071	2R_10344071_INS [dm3] 2R_14456566_INS [dm6]	A	ACT	8.045e^-5	0.758	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11526284	3L_11526284_INS [dm3] 3L_11533184_INS [dm6]	A	ACAA	8.069e^-5	0.758	INTRON Mob2
3L	16745393	3L_16745393_SNP [dm3] 3L_16752293_SNP [dm6]	C	T	8.075e^-5	0.758	INTERGENIC
3L	16551309	3L_16551309_SNP [dm3] 3L_16558209_SNP [dm6]	T	A	8.079e^-5	0.758	DOWNSTREAM CG4229 INTERGENIC
2L	8436244	2L_8436244_SNP [dm3] 2L_8436244_SNP [dm6]	G	T	8.101e^-5	0.758	INTRON D12	TF binding site mE1_TFBS_sens
2L	3433431	2L_3433431_SNP [dm3] 2L_3433431_SNP [dm6]	T	A	8.190e^-5	0.758	INTERGENIC
2L	5366487	2L_5366487_SNP [dm3] 2L_5366487_SNP [dm6]	C	G	8.193e^-5	0.758	DOWNSTREAM nompC INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	19624530	3R_19624530_SNP [dm3] 3R_23798808_SNP [dm6]	G	C	8.256e^-5	0.758	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14357378	2L_14357378_SNP [dm3] 2L_14357378_SNP [dm6]	T	C	8.257e^-5	0.758	SYNONYMOUS_CODING Rab14 UPSTREAM CR44851
2L	1057528	2L_1057528_SNP [dm3] 2L_1057528_SNP [dm6]	C	T	8.293e^-5	0.758	INTRON S	TF binding site mE1_TFBS_sens
3R	5110259	3R_5110259_SNP [dm3] 3R_9284537_SNP [dm6]	G	A	8.294e^-5	0.758	INTERGENIC
2L	8236332	2L_8236332_SNP [dm3] 2L_8236332_SNP [dm6]	T	C	8.295e^-5	0.758	INTRON Pvr
3R	19776662	3R_19776662_SNP [dm3] 3R_23950940_SNP [dm6]	A	G	8.386e^-5	0.758	INTERGENIC
X	54371	X_54371_SNP [dm3] X_157984_SNP [dm6]	G	T	8.470e^-5	0.758	INTRON tyn	transposable element FlyBase
2L	8807137	2L_8807137_SNP [dm3] 2L_8807137_SNP [dm6]	T	C	8.510e^-5	0.758	INTERGENIC
2R	13473132	2R_13473132_SNP [dm3] 2R_17585627_SNP [dm6]	A	G	8.568e^-5	0.758	UTR_3_PRIME CG14483 UPSTREAM CR45275 DOWNSTREAM CG14483 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	13473137	2R_13473137_MNP [dm3] 2R_17585632_MNP [dm6]	TTT	ACA	8.568e^-5	0.758	UTR_3_PRIME CG14483 UPSTREAM CR45275 DOWNSTREAM CG14483 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	13473140	2R_13473140_DEL [dm3] 2R_17585635_DEL [dm6]	CC	C	8.568e^-5	0.758	UTR_3_PRIME CG14483 UPSTREAM CR45275 DOWNSTREAM RhoGAP54D	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	13473146	2R_13473146_MNP [dm3] 2R_17585641_MNP [dm6]	GATT	CGGG	8.568e^-5	0.758	UTR_3_PRIME CG14483 UPSTREAM CR45275 DOWNSTREAM RhoGAP54D	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	16987178	3R_16987178_SNP [dm3] 3R_21161456_SNP [dm6]	T	C	8.630e^-5	0.758	UPSTREAM CG10824 INTRON SNF4Agamma
X	9908472	X_9908472_SNP [dm3] X_10014439_SNP [dm6]	C	T	8.648e^-5	0.758	DOWNSTREAM CG2990 INTERGENIC
2R	20002899	2R_20002899_SNP [dm3] 2R_24115376_SNP [dm6]	C	G	8.674e^-5	0.758	SYNONYMOUS_CODING CG3253	TF binding site mE1_TFBS_sens
2L	12698365	2L_12698365_SNP [dm3] 2L_12698365_SNP [dm6]	A	T	8.681e^-5	0.758	SYNONYMOUS_CODING PICK1 DOWNSTREAM CG17036	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16277389	2R_16277389_SNP [dm3] 2R_20389884_SNP [dm6]	G	A	8.683e^-5	0.758	INTERGENIC
2R	18493463	2R_18493463_SNP [dm3] 2R_22605958_SNP [dm6]	C	T	8.738e^-5	0.758	UPSTREAM RpS16 & 2 others INTRON RpS16	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12154058	2L_12154058_SNP [dm3] 2L_12154058_SNP [dm6]	C	A	8.749e^-5	0.758	INTRON CG31760
3L	14336960	3L_14336960_SNP [dm3] 3L_14343860_SNP [dm6]	T	C	8.754e^-5	0.758	INTRON fz
3L	14187085	3L_14187085_SNP [dm3] 3L_14193985_SNP [dm6]	A	T	8.774e^-5	0.758	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	17955222	3L_17955222_SNP [dm3] 3L_17962122_SNP [dm6]	T	A	8.818e^-5	0.758	UPSTREAM Eip75B INTRON Eip75B
3L	7890935	3L_7890935_SNP [dm3] 3L_7897835_SNP [dm6]	C	T	8.881e^-5	0.758	SYNONYMOUS_CODING pbl
2L	7586241	2L_7586241_DEL [dm3] 2L_7586241_DEL [dm6]	GG	G	8.899e^-5	0.758	INTERGENIC
X	17672539	X_17672539_SNP [dm3] X_17778506_SNP [dm6]	A	T	8.916e^-5	0.758	UTR_3_PRIME unc-4
3L	4840580	3L_4840580_SNP [dm3] 3L_4840580_SNP [dm6]	C	G	8.930e^-5	0.758	UPSTREAM CG13707 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	16986953	3R_16986953_SNP [dm3] 3R_21161231_SNP [dm6]	T	G	8.949e^-5	0.758	UPSTREAM CG10824 INTRON SNF4Agamma
2L	5181664	2L_5181664_SNP [dm3] 2L_5181664_SNP [dm6]	C	A	9.005e^-5	0.758	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_HSA
3L	9735810	3L_9735810_SNP [dm3] 3L_9742710_SNP [dm6]	C	A	9.080e^-5	0.758	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15394516	2R_15394516_SNP [dm3] 2R_19507011_SNP [dm6]	T	A	9.093e^-5	0.758	UPSTREAM tRNA:H:56E INTERGENIC
3R	5140988	3R_5140988_SNP [dm3] 3R_9315266_SNP [dm6]	A	T	9.097e^-5	0.758	INTRON CG8861
3R	9330160	3R_9330160_SNP [dm3] 3R_13504438_SNP [dm6]	G	C	9.126e^-5	0.758	INTERGENIC
3R	16987288	3R_16987288_SNP [dm3] 3R_21161566_SNP [dm6]	T	C	9.129e^-5	0.758	UPSTREAM CG10824 INTRON SNF4Agamma
3R	1445424	3R_1445424_SNP [dm3] 3R_5619702_SNP [dm6]	T	C	9.371e^-5	0.758	INTRON Spec2
3R	3253352	3R_3253352_SNP [dm3] 3R_7427630_SNP [dm6]	A	T	9.424e^-5	0.758	INTERGENIC
2L	16076142	2L_16076142_SNP [dm3] 2L_16076142_SNP [dm6]	A	G	9.435e^-5	0.758	INTRON beat-Ia
3R	25546968	3R_25546968_SNP [dm3] 3R_29721246_SNP [dm6]	G	A	9.441e^-5	0.758	SYNONYMOUS_CODING CG15506
2R	16543983	2R_16543983_SNP [dm3] 2R_20656478_SNP [dm6]	C	A	9.453e^-5	0.758	NON_SYNONYMOUS_CODING CG11159 INTRON Lrt	TF binding site mE1_TFBS_cad
2R	16362488	2R_16362488_DEL [dm3] 2R_20474983_DEL [dm6]	CC	C	9.498e^-5	0.758	INTRON CG12484
3R	22682208	3R_22682208_SNP [dm3] 3R_26856486_SNP [dm6]	A	C	9.592e^-5	0.758	INTRON Lerp
3L	7138315	3L_7138315_SNP [dm3] 3L_7145215_SNP [dm6]	G	A	9.723e^-5	0.758	INTRON corn
3L	17949466	3L_17949466_SNP [dm3] 3L_17956366_SNP [dm6]	T	C	9.732e^-5	0.758	INTRON Eip75B	TF binding site mE1_TFBS_cad
X	9604482	X_9604482_SNP [dm3] X_9710449_SNP [dm6]	G	A	9.734e^-5	0.758	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16294433	2R_16294433_SNP [dm3] 2R_20406928_SNP [dm6]	A	G	9.756e^-5	0.758	INTERGENIC
2L	14733257	2L_14733257_SNP [dm3] 2L_14733257_SNP [dm6]	A	C	9.797e^-5	0.758	UPSTREAM CR44857 INTERGENIC
2L	8052463	2L_8052463_SNP [dm3] 2L_8052463_SNP [dm6]	A	G	9.872e^-5	0.758	SYNONYMOUS_CODING CG7466
3L	10734158	3L_10734158_SNP [dm3] 3L_10741058_SNP [dm6]	T	C	9.957e^-5	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4840608	3L_4840608_SNP [dm3] 3L_4840608_SNP [dm6]	C	A	1.003e^-4	0.758	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	21795845	2L_21795845_SNP [dm3] 2L_21795845_SNP [dm6]	A	T	1.013e^-4	0.758	UPSTREAM CG31612 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
2L	4506725	2L_4506725_SNP [dm3] 2L_4506725_SNP [dm6]	A	G	1.025e^-4	0.758	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3282444	3L_3282444_SNP [dm3] 3L_3282444_SNP [dm6]	C	T	1.025e^-4	0.758	INTRON CG12017
2L	21795846	2L_21795846_SNP [dm3] 2L_21795846_SNP [dm6]	A	T	1.030e^-4	0.758	UPSTREAM CG31612 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
2L	21795848	2L_21795848_SNP [dm3] 2L_21795848_SNP [dm6]	A	C	1.030e^-4	0.758	UPSTREAM CG31612 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
2L	21795849	2L_21795849_SNP [dm3] 2L_21795849_SNP [dm6]	G	C	1.030e^-4	0.758	UPSTREAM CG31612 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
3L	11709552	3L_11709552_SNP [dm3] 3L_11716452_SNP [dm6]	T	A	1.036e^-4	0.758	INTERGENIC
X	1066677	X_1066677_SNP [dm3] X_1172644_SNP [dm6]	T	C	1.037e^-4	0.758	UTR_3_PRIME CG11378
2L	7963065	2L_7963065_SNP [dm3] 2L_7963065_SNP [dm6]	A	T	1.041e^-4	0.758	INTRON Snoo
2L	1371353	2L_1371353_SNP [dm3] 2L_1371353_SNP [dm6]	T	G	1.044e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_Med
2L	8645347	2L_8645347_SNP [dm3] 2L_8645347_SNP [dm6]	T	C	1.054e^-4	0.758	INTRON Sema-1a
2R	17919959	2R_17919959_SNP [dm3] 2R_22032454_SNP [dm6]	T	C	1.056e^-4	0.758	INTRON CG34370
3L	2893989	3L_2893989_SNP [dm3] 3L_2893989_SNP [dm6]	G	A	1.058e^-4	0.758	INTERGENIC
3L	3285134	3L_3285134_INS [dm3] 3L_3285134_INS [dm6]	A	AA	1.059e^-4	0.758	INTRON CG12017
3L	3285142	3L_3285142_SNP [dm3] 3L_3285142_SNP [dm6]	G	A	1.059e^-4	0.758	INTRON CG12017
3L	12892399	3L_12892399_SNP [dm3] 3L_12899299_SNP [dm6]	C	T	1.059e^-4	0.758	INTERGENIC
2R	16866650	2R_16866650_SNP [dm3] 2R_20979145_SNP [dm6]	A	T	1.073e^-4	0.758	START_GAINED CG9313 UTR_5_PRIME CG9313 UPSTREAM CG15650 & 1 other
2L	18664369	2L_18664369_SNP [dm3] 2L_18664369_SNP [dm6]	G	A	1.077e^-4	0.758	UPSTREAM CR42490 INTERGENIC
2L	8606428	2L_8606428_SNP [dm3] 2L_8606428_SNP [dm6]	C	G	1.084e^-4	0.758	INTRON Sema-1a
X	12266372	X_12266372_SNP [dm3] X_12372339_SNP [dm6]	A	G	1.084e^-4	0.758	UPSTREAM CG2577 INTERGENIC
X	7750305	X_7750305_SNP [dm3] X_7856272_SNP [dm6]	G	C	1.086e^-4	0.758	INTERGENIC
3R	21895229	3R_21895229_SNP [dm3] 3R_26069507_SNP [dm6]	A	C	1.088e^-4	0.758	DOWNSTREAM CR44950 INTERGENIC
3R	27129280	3R_27129280_SNP [dm3] 3R_31303558_SNP [dm6]	A	G	1.102e^-4	0.758	SYNONYMOUS_CODING CG11340	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6016520	2L_6016520_SNP [dm3] 2L_6016520_SNP [dm6]	C	T	1.103e^-4	0.758	INTRON H2.0	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	17589851	3L_17589851_INS [dm3] 3L_17596751_INS [dm6]	T	TT	1.109e^-4	0.758	INTRON Eip74EF	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	13463483	3R_13463483_SNP [dm3] 3R_17637761_SNP [dm6]	G	A	1.111e^-4	0.758	INTRON CG43175
2R	19927376	2R_19927376_SNP [dm3] 2R_24039853_SNP [dm6]	A	G	1.111e^-4	0.758	SYNONYMOUS_CODING IntS1
3R	26817206	3R_26817206_DEL [dm3] 3R_30991484_DEL [dm6]	CTATTTCCC	C	1.113e^-4	0.758	DOWNSTREAM CG31007 INTRON 5-HT7
3R	17823921	3R_17823921_SNP [dm3] 3R_21998199_SNP [dm6]	C	T	1.114e^-4	0.758	INTRON Eip93F
2R	19811901	2R_19811901_SNP [dm3] 2R_23924378_SNP [dm6]	C	T	1.116e^-4	0.758	UPSTREAM CG2812 DOWNSTREAM Ca-P60A INTRON kcc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2896085	3L_2896085_SNP [dm3] 3L_2896085_SNP [dm6]	T	C	1.116e^-4	0.758	UPSTREAM Shab INTRON Shab	TF binding site mE1_TFBS_Trl
2L	7919741	2L_7919741_SNP [dm3] 2L_7919741_SNP [dm6]	A	T	1.120e^-4	0.758	INTRON Snoo
3R	513407	3R_513407_SNP [dm3] 3R_4687685_SNP [dm6]	T	C	1.125e^-4	0.758	INTRON CG43427
2L	8075871	2L_8075871_SNP [dm3] 2L_8075871_SNP [dm6]	A	G	1.132e^-4	0.758	INTRON Mcr
X	20218269	X_20218269_SNP [dm3] X_20347242_SNP [dm6]	C	A	1.140e^-4	0.758	INTERGENIC
X	10614728	X_10614728_SNP [dm3] X_10720695_SNP [dm6]	C	A	1.143e^-4	0.758	INTRON CG32676
3L	1647129	3L_1647129_SNP [dm3] 3L_1647129_SNP [dm6]	A	G	1.151e^-4	0.758	NON_SYNONYMOUS_CODING CG17249 UPSTREAM Bro	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	6690104	3L_6690104_INS [dm3] 3L_6697004_INS [dm6]	T	TTTAGTCATTTTAATTAGGG...	1.154e^-4	0.758	INTRON SP1173
3R	26471636	3R_26471636_SNP [dm3] 3R_30645914_SNP [dm6]	A	T	1.155e^-4	0.758	UPSTREAM CG31013 DOWNSTREAM PH4alphaPV INTERGENIC
3L	15200832	3L_15200832_SNP [dm3] 3L_15207732_SNP [dm6]	G	C	1.156e^-4	0.758	UPSTREAM CG6888 INTERGENIC
2R	17799165	2R_17799165_SNP [dm3] 2R_21911660_SNP [dm6]	T	A	1.158e^-4	0.758	INTRON Fili
2R	16406658	2R_16406658_SNP [dm3] 2R_20519153_SNP [dm6]	T	G	1.160e^-4	0.758	INTERGENIC
X	5289897	X_5289897_SNP [dm3] X_5395864_SNP [dm6]	A	T	1.161e^-4	0.758	INTRON SK
3L	2202501	3L_2202501_SNP [dm3] 3L_2202501_SNP [dm6]	T	A	1.162e^-4	0.758	INTERGENIC
2L	21901470	2L_21901470_DEL [dm3] 2L_21901470_DEL [dm6]	CCTTTAATATTCCAGTAAAT...	C	1.169e^-4	0.758	INTERGENIC	TF binding site mE1_TFBS_HSA
X	19362341	X_19362341_SNP [dm3] X_19468308_SNP [dm6]	G	T	1.169e^-4	0.758	SPLICE_SITE_REGION kek5 SYNONYMOUS_CODING kek5	TF binding site mE1_TFBS_chinmo
3L	8857647	3L_8857647_SNP [dm3] 3L_8864547_SNP [dm6]	A	G	1.169e^-4	0.758	INTRON dally
2L	12293940	2L_12293940_SNP [dm3] 2L_12293940_SNP [dm6]	A	C	1.172e^-4	0.758	INTRON aret
X	19790737	X_19790737_SNP [dm3] X_19896704_SNP [dm6]	C	T	1.172e^-4	0.758	INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	10318628	2L_10318628_SNP [dm3] 2L_10318628_SNP [dm6]	C	T	1.188e^-4	0.758	NON_SYNONYMOUS_CODING CG5381	TF binding site mE1_TFBS_sens
2L	18664438	2L_18664438_SNP [dm3] 2L_18664438_SNP [dm6]	T	C	1.188e^-4	0.758	UPSTREAM CR42490 INTERGENIC
3L	7484492	3L_7484492_SNP [dm3] 3L_7491392_SNP [dm6]	G	T	1.199e^-4	0.758	UPSTREAM Cyp316a1 INTERGENIC
2L	9282473	2L_9282473_SNP [dm3] 2L_9282473_SNP [dm6]	T	G	1.207e^-4	0.758	INTRON Ggamma30A
2L	1722715	2L_1722715_SNP [dm3] 2L_1722715_SNP [dm6]	C	T	1.213e^-4	0.758	INTRON Rim2
2R	13398853	2R_13398853_SNP [dm3] 2R_17511348_SNP [dm6]	A	C	1.214e^-4	0.758	UTR_3_PRIME CG34193 UPSTREAM CG4847 DOWNSTREAM CG34193
2R	20345607	2R_20345607_SNP [dm3] 2R_24458084_SNP [dm6]	A	T	1.225e^-4	0.758	INTRON CG13579
3L	10699904	3L_10699904_INS [dm3] 3L_10706804_INS [dm6]	A	AA	1.226e^-4	0.758	INTERGENIC
2L	16263207	2L_16263207_SNP [dm3] 2L_16263207_SNP [dm6]	T	G	1.241e^-4	0.758	DOWNSTREAM crp INTRON CG4935
3L	18637672	3L_18637672_SNP [dm3] 3L_18644572_SNP [dm6]	C	G	1.248e^-4	0.758	INTRON MYPT-75D
2R	18622726	2R_18622726_SNP [dm3] 2R_22735221_SNP [dm6]	G	T	1.250e^-4	0.758	INTRON jbug
2L	7076895	2L_7076895_SNP [dm3] 2L_7076895_SNP [dm6]	T	G	1.270e^-4	0.758	INTRON Pvf2
3R	26048560	3R_26048560_DEL [dm3] 3R_30222838_DEL [dm6]	TCAACTT	T	1.271e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	14456657	3R_14456657_SNP [dm3] 3R_18630935_SNP [dm6]	C	T	1.301e^-4	0.758	INTRON qin & 1 other
X	7890224	X_7890224_INS [dm3] X_7996191_INS [dm6]	AG	TTA	1.302e^-4	0.758	INTRON Tbh	TF binding site mE1_TFBS_sbb
3L	1661216	3L_1661216_SNP [dm3] 3L_1661216_SNP [dm6]	C	A	1.305e^-4	0.758	INTRON CG7971
X	20262267	X_20262267_SNP [dm3] X_20391240_SNP [dm6]	A	G	1.305e^-4	0.758	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16987339	3R_16987339_SNP [dm3] 3R_21161617_SNP [dm6]	T	G	1.309e^-4	0.758	UPSTREAM CG10824 INTRON SNF4Agamma
2L	21901118	2L_21901118_SNP [dm3] 2L_21901118_SNP [dm6]	A	G	1.313e^-4	0.758	INTERGENIC
3L	17115580	3L_17115580_SNP [dm3] 3L_17122480_SNP [dm6]	C	A	1.315e^-4	0.758	INTRON Rbp6	TF binding site BDTNP1_TFBS_da
2R	19778931	2R_19778931_SNP [dm3] 2R_23891408_SNP [dm6]	C	T	1.315e^-4	0.758	NON_SYNONYMOUS_CODING DNA-ligI	TF binding site mE1_TFBS_sens
2L	12281772	2L_12281772_SNP [dm3] 2L_12281772_SNP [dm6]	G	A	1.320e^-4	0.758	INTRON aret
X	15281434	X_15281434_SNP [dm3] X_15387401_SNP [dm6]	A	G	1.325e^-4	0.758	UTR_3_PRIME Cngl
3L	5643188	3L_5643188_SNP [dm3] 3L_5650088_SNP [dm6]	C	A	1.325e^-4	0.758	UTR_3_PRIME Blimp-1
3L	17263027	3L_17263027_SNP [dm3] 3L_17269927_SNP [dm6]	G	A	1.326e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3878841	2L_3878841_SNP [dm3] 2L_3878841_SNP [dm6]	C	T	1.327e^-4	0.758	INTRON capu
3L	5480794	3L_5480794_SNP [dm3] 3L_5487694_SNP [dm6]	A	C	1.328e^-4	0.758	INTERGENIC
3L	8915122	3L_8915122_SNP [dm3] 3L_8922022_SNP [dm6]	T	A	1.330e^-4	0.758	INTRON Tsp66E
X	20262270	X_20262270_INS [dm3] X_20391243_INS [dm6]	A	ATCAATAATAATTCAA...	1.338e^-4	0.758	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19550485	3L_19550485_SNP [dm3] 3L_19557385_SNP [dm6]	A	T	1.340e^-4	0.758	UPSTREAM CR44677 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9757069	X_9757069_SNP [dm3] X_9863036_SNP [dm6]	T	A	1.341e^-4	0.758	INTERGENIC
3R	908878	3R_908878_INS [dm3] 3R_5083156_INS [dm6]	G	GT	1.349e^-4	0.758	UTR_3_PRIME corto DOWNSTREAM corto
3L	3558315	3L_3558315_SNP [dm3] 3L_3558315_SNP [dm6]	T	C	1.354e^-4	0.758	INTRON Eip63E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7484493	3L_7484493_SNP [dm3] 3L_7491393_SNP [dm6]	C	T	1.355e^-4	0.758	UPSTREAM Cyp316a1 INTERGENIC
3L	9735039	3L_9735039_SNP [dm3] 3L_9741939_SNP [dm6]	A	T	1.368e^-4	0.758	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14637789	2L_14637789_SNP [dm3] 2L_14637789_SNP [dm6]	G	A	1.369e^-4	0.758	INTRON osp
2R	19473326	2R_19473326_SNP [dm3] 2R_23585803_SNP [dm6]	G	C	1.375e^-4	0.758	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	4825559	3R_4825559_SNP [dm3] 3R_8999837_SNP [dm6]	A	C	1.380e^-4	0.758	INTRON CG31100
2R	11080474	2R_11080474_SNP [dm3] 2R_15192969_SNP [dm6]	T	C	1.384e^-4	0.758	NON_SYNONYMOUS_CODING Sfp51E
3R	19625266	3R_19625266_SNP [dm3] 3R_23799544_SNP [dm6]	T	C	1.399e^-4	0.758	INTRON mbc
2L	6741330	2L_6741330_SNP [dm3] 2L_6741330_SNP [dm6]	T	A	1.403e^-4	0.758	INTERGENIC
2R	11724772	2R_11724772_SNP [dm3] 2R_15837267_SNP [dm6]	C	T	1.416e^-4	0.758	INTRON tun	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	3550255	3L_3550255_SNP [dm3] 3L_3550255_SNP [dm6]	G	C	1.417e^-4	0.758	INTRON Eip63E
2R	15925420	2R_15925420_SNP [dm3] 2R_20037915_SNP [dm6]	T	A	1.421e^-4	0.758	INTERGENIC
2L	12044117	2L_12044117_SNP [dm3] 2L_12044117_SNP [dm6]	A	G	1.436e^-4	0.758	UTR_5_PRIME CG6785	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	17114740	3L_17114740_SNP [dm3] 3L_17121640_SNP [dm6]	C	T	1.436e^-4	0.758	INTRON Rbp6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_inv
3L	4152861	3L_4152861_SNP [dm3] 3L_4152861_SNP [dm6]	G	A	1.437e^-4	0.758	DOWNSTREAM CG1299 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7318074	X_7318074_SNP [dm3] X_7424041_SNP [dm6]	C	A	1.438e^-4	0.758	DOWNSTREAM CG15036 INTERGENIC
3R	19776740	3R_19776740_SNP [dm3] 3R_23951018_SNP [dm6]	A	T	1.441e^-4	0.758	INTERGENIC
X	12192743	X_12192743_SNP [dm3] X_12298710_SNP [dm6]	T	G	1.445e^-4	0.758	INTRON Ten-a
3L	7138322	3L_7138322_SNP [dm3] 3L_7145222_SNP [dm6]	A	G	1.451e^-4	0.758	INTRON corn
2L	21802262	2L_21802262_SNP [dm3] 2L_21802262_SNP [dm6]	A	G	1.453e^-4	0.758	INTERGENIC
2R	18452869	2R_18452869_SNP [dm3] 2R_22565364_SNP [dm6]	A	T	1.455e^-4	0.758	INTRON dnr1	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	3161304	3L_3161304_SNP [dm3] 3L_3161304_SNP [dm6]	C	T	1.457e^-4	0.758	SYNONYMOUS_CODING pfk UPSTREAM rasp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3L	2202502	3L_2202502_SNP [dm3] 3L_2202502_SNP [dm6]	C	T	1.459e^-4	0.758	INTERGENIC
2L	9564663	2L_9564663_SNP [dm3] 2L_9564663_SNP [dm6]	A	C	1.464e^-4	0.758	INTRON jp
3L	16741466	3L_16741466_SNP [dm3] 3L_16748366_SNP [dm6]	G	C	1.464e^-4	0.758	INTERGENIC
3R	461587	3R_461587_SNP [dm3] 3R_4635865_SNP [dm6]	C	T	1.476e^-4	0.758	DOWNSTREAM CR45673 INTERGENIC	TF binding site mE1_TFBS_D
2R	17496873	2R_17496873_SNP [dm3] 2R_21609368_SNP [dm6]	T	C	1.482e^-4	0.758	DOWNSTREAM CR43243 INTRON CG15673
2L	16263203	2L_16263203_DEL [dm3] 2L_16263203_DEL [dm6]	TG	T	1.488e^-4	0.758	DOWNSTREAM crp INTRON CG4935
2R	18452073	2R_18452073_SNP [dm3] 2R_22564568_SNP [dm6]	G	A	1.489e^-4	0.758	SYNONYMOUS_CODING dnr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1170620	3L_1170620_SNP [dm3] 3L_1170620_SNP [dm6]	T	C	1.490e^-4	0.758	INTRON bab2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	21896719	3R_21896719_SNP [dm3] 3R_26070997_SNP [dm6]	C	T	1.495e^-4	0.758	EXON CR44950
3R	20565182	3R_20565182_SNP [dm3] 3R_24739460_SNP [dm6]	T	G	1.503e^-4	0.758	INTRON tok
2R	16361074	2R_16361074_SNP [dm3] 2R_20473569_SNP [dm6]	C	T	1.507e^-4	0.758	INTRON CG12484
2R	16361091	2R_16361091_SNP [dm3] 2R_20473586_SNP [dm6]	A	C	1.507e^-4	0.758	INTRON CG12484
3L	17193388	3L_17193388_SNP [dm3] 3L_17200288_SNP [dm6]	T	A	1.518e^-4	0.758	INTRON Rbp6
2L	3161399	2L_3161399_SNP [dm3] 2L_3161399_SNP [dm6]	G	A	1.522e^-4	0.758	SYNONYMOUS_CODING gkt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11657061	2R_11657061_SNP [dm3] 2R_15769556_SNP [dm6]	C	T	1.533e^-4	0.758	SPLICE_SITE_REGION Zasp52 INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19409961	2R_19409961_SNP [dm3] 2R_23522438_SNP [dm6]	C	A	1.535e^-4	0.758	INTRON RabX1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	718515	3L_718515_SNP [dm3] 3L_718515_SNP [dm6]	A	C	1.535e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17955240	3L_17955240_SNP [dm3] 3L_17962140_SNP [dm6]	T	C	1.541e^-4	0.758	UPSTREAM Eip75B INTRON Eip75B
2L	12154018	2L_12154018_SNP [dm3] 2L_12154018_SNP [dm6]	T	A	1.544e^-4	0.758	INTRON CG31760
3L	18640979	3L_18640979_SNP [dm3] 3L_18647879_SNP [dm6]	G	T	1.545e^-4	0.758	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_twi
2R	18356494	2R_18356494_SNP [dm3] 2R_22468989_SNP [dm6]	A	G	1.551e^-4	0.758	INTRON CG10384	TF binding site BDTNP1_TFBS_twi
2R	19745734	2R_19745734_SNP [dm3] 2R_23858211_SNP [dm6]	G	A	1.553e^-4	0.758	SYNONYMOUS_CODING bgcn DOWNSTREAM TBPH	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	8164115	X_8164115_SNP [dm3] X_8270082_SNP [dm6]	A	G	1.560e^-4	0.758	UTR_3_PRIME Corp INTRON CG1632
2L	21805243	2L_21805243_SNP [dm3] 2L_21805243_SNP [dm6]	T	C	1.562e^-4	0.758	INTERGENIC
2R	14567246	2R_14567246_SNP [dm3] 2R_18679741_SNP [dm6]	C	G	1.562e^-4	0.758	NON_SYNONYMOUS_CODING CG44435 UTR_3_PRIME CG44434	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3L	16867402	3L_16867402_SNP [dm3] 3L_16874302_SNP [dm6]	C	A	1.563e^-4	0.758	INTRON Lmpt
X	8722561	X_8722561_SNP [dm3] X_8828528_SNP [dm6]	T	C	1.576e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9574049	2L_9574049_SNP [dm3] 2L_9574049_SNP [dm6]	T	C	1.577e^-4	0.758	SYNONYMOUS_CODING Mtpalpha DOWNSTREAM CG3838
2R	16817456	2R_16817456_SNP [dm3] 2R_20929951_SNP [dm6]	T	A	1.587e^-4	0.758	INTRON Rx
3L	4678324	3L_4678324_SNP [dm3] 3L_4678324_SNP [dm6]	G	T	1.593e^-4	0.758	DOWNSTREAM CG34266 INTRON axo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4678288	3L_4678288_SNP [dm3] 3L_4678288_SNP [dm6]	G	A	1.595e^-4	0.758	DOWNSTREAM CG34266 INTRON axo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10392098	2R_10392098_SNP [dm3] 2R_14504593_SNP [dm6]	C	A	1.597e^-4	0.758	UPSTREAM Asx INTRON Asx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	21851919	2L_21851919_INS [dm3] 2L_21851919_INS [dm6]	T	TTCT	1.597e^-4	0.758	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	5122854	3L_5122854_SNP [dm3] 3L_5129754_SNP [dm6]	T	C	1.602e^-4	0.758	SYNONYMOUS_CODING CG4597
2L	21826737	2L_21826737_SNP [dm3] 2L_21826737_SNP [dm6]	A	G	1.604e^-4	0.758	INTERGENIC	transposable element FlyBase
2L	14770995	2L_14770995_SNP [dm3] 2L_14770995_SNP [dm6]	T	A	1.610e^-4	0.758	INTERGENIC
2L	10494830	2L_10494830_SNP [dm3] 2L_10494830_SNP [dm6]	A	G	1.611e^-4	0.758	INTRON Myo31DF
3R	11988209	3R_11988209_SNP [dm3] 3R_16162487_SNP [dm6]	A	C	1.613e^-4	0.758	INTRON CG6006
3R	7366241	3R_7366241_SNP [dm3] 3R_11540519_SNP [dm6]	A	G	1.624e^-4	0.758	INTRON dpr4
3L	15306965	3L_15306965_SNP [dm3] 3L_15313865_SNP [dm6]	T	A	1.627e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	15043073	3L_15043073_SNP [dm3] 3L_15049973_SNP [dm6]	G	C	1.629e^-4	0.758	NON_SYNONYMOUS_CODING CG18581 UPSTREAM CG43678 DOWNSTREAM CG12310 & 1 other INTRON Sytbeta	TF binding site BDTNP1_TFBS_twi
2L	20465764	2L_20465764_SNP [dm3] 2L_20465764_SNP [dm6]	A	C	1.632e^-4	0.758	INTRON CR44980
3R	26920822	3R_26920822_SNP [dm3] 3R_31095100_SNP [dm6]	C	T	1.634e^-4	0.758	INTRON CG11317
3L	17957577	3L_17957577_SNP [dm3] 3L_17964477_SNP [dm6]	T	A	1.634e^-4	0.758	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
3R	22682213	3R_22682213_SNP [dm3] 3R_26856491_SNP [dm6]	A	T	1.644e^-4	0.758	INTRON Lerp
2R	14724903	2R_14724903_SNP [dm3] 2R_18837398_SNP [dm6]	T	C	1.658e^-4	0.758	SYNONYMOUS_CODING CG15099 DOWNSTREAM CG15083
2R	11080893	2R_11080893_SNP [dm3] 2R_15193388_SNP [dm6]	A	G	1.668e^-4	0.758	UPSTREAM Sfp51E DOWNSTREAM CG43829 INTERGENIC
2R	13473143	2R_13473143_SNP [dm3] 2R_17585638_SNP [dm6]	G	T	1.671e^-4	0.758	UTR_3_PRIME CG14483 UPSTREAM CR45275 DOWNSTREAM RhoGAP54D	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	10699760	3L_10699760_SNP [dm3] 3L_10706660_SNP [dm6]	G	T	1.675e^-4	0.758	INTERGENIC
3L	14337354	3L_14337354_SNP [dm3] 3L_14344254_SNP [dm6]	G	C	1.689e^-4	0.758	INTRON fz
X	8722551	X_8722551_SNP [dm3] X_8828518_SNP [dm6]	C	T	1.694e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17374333	2R_17374333_INS [dm3] 2R_21486828_INS [dm6]	G	GG	1.702e^-4	0.758	UTR_3_PRIME Sara DOWNSTREAM Fkbp14
X	2448730	X_2448730_SNP [dm3] X_2554697_SNP [dm6]	A	T	1.705e^-4	0.758	INTRON Pdfr
2L	21828227	2L_21828227_SNP [dm3] 2L_21828227_SNP [dm6]	T	G	1.705e^-4	0.758	UPSTREAM tsh INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
X	7890277	X_7890277_SNP [dm3] X_7996244_SNP [dm6]	A	G	1.707e^-4	0.758	INTRON Tbh	TF binding site mE1_TFBS_sbb
2R	15291583	2R_15291583_SNP [dm3] 2R_19404078_SNP [dm6]	C	G	1.710e^-4	0.758	NON_SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	21901015	2L_21901015_SNP [dm3] 2L_21901015_SNP [dm6]	C	G	1.711e^-4	0.758	INTERGENIC
2R	3956647	2R_3956647_SNP [dm3] 2R_8069142_SNP [dm6]	C	T	1.714e^-4	0.758	UPSTREAM lig INTRON lig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	12805458	2L_12805458_SNP [dm3] 2L_12805458_SNP [dm6]	C	T	1.715e^-4	0.758	INTERGENIC
X	7862880	X_7862880_SNP [dm3] X_7968847_SNP [dm6]	G	T	1.721e^-4	0.758	UPSTREAM sws & 1 other INTRON sn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	16127487	2L_16127487_SNP [dm3] 2L_16127487_SNP [dm6]	G	C	1.721e^-4	0.758	INTERGENIC
3L	5123063	3L_5123063_SNP [dm3] 3L_5129963_SNP [dm6]	G	C	1.721e^-4	0.758	NON_SYNONYMOUS_CODING CG4597
2R	10321133	2R_10321133_SNP [dm3] 2R_14433628_SNP [dm6]	G	T	1.722e^-4	0.758	EXON CR45277	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
2L	7962127	2L_7962127_SNP [dm3] 2L_7962127_SNP [dm6]	A	C	1.729e^-4	0.758	INTRON Snoo
3R	20999040	3R_20999040_SNP [dm3] 3R_25173318_SNP [dm6]	A	C	1.732e^-4	0.758	INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	16294346	2R_16294346_SNP [dm3] 2R_20406841_SNP [dm6]	A	G	1.735e^-4	0.758	INTERGENIC	TF binding site mE1_TFBS_inv
2R	4176364	2R_4176364_SNP [dm3] 2R_8288859_SNP [dm6]	T	C	1.737e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	6931371	3R_6931371_SNP [dm3] 3R_11105649_SNP [dm6]	A	T	1.738e^-4	0.758	INTERGENIC
3L	18199761	3L_18199761_SNP [dm3] 3L_18206661_SNP [dm6]	T	C	1.739e^-4	0.758	INTERGENIC
3R	8045917	3R_8045917_SNP [dm3] 3R_12220195_SNP [dm6]	G	A	1.743e^-4	0.758	SYNONYMOUS_CODING CG4860 UPSTREAM CG4848	TF binding site mE1_TFBS_chinmo
2L	7724783	2L_7724783_SNP [dm3] 2L_7724783_SNP [dm6]	C	A	1.746e^-4	0.758	NON_SYNONYMOUS_CODING CG13795
2R	7107070	2R_7107070_SNP [dm3] 2R_11219565_SNP [dm6]	T	C	1.747e^-4	0.758	UTR_5_PRIME Syx6 UPSTREAM Syx6 & 1 other INTRON CG9084	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	19409956	2R_19409956_DEL [dm3] 2R_23522433_DEL [dm6]	GA	G	1.759e^-4	0.758	INTRON RabX1	TF binding site BDTNP1_TFBS_dl
2L	5428881	2L_5428881_SNP [dm3] 2L_5428881_SNP [dm6]	A	G	1.765e^-4	0.758	INTERGENIC
2L	8075860	2L_8075860_SNP [dm3] 2L_8075860_SNP [dm6]	A	T	1.765e^-4	0.758	SPLICE_SITE_REGION Mcr INTRON Mcr
2L	2943210	2L_2943210_SNP [dm3] 2L_2943210_SNP [dm6]	A	G	1.772e^-4	0.758	INTRON lilli
2L	21805871	2L_21805871_SNP [dm3] 2L_21805871_SNP [dm6]	G	C	1.777e^-4	0.758	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	16876446	2R_16876446_SNP [dm3] 2R_20988941_SNP [dm6]	G	T	1.779e^-4	0.758	INTRON CG3216	TF binding site mE1_TFBS_cad
2R	21119975	2R_21119975_INS [dm3] 2R_25232452_INS [dm6]	A	AT	1.780e^-4	0.758	INTRON CG9380	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25628895	3R_25628895_SNP [dm3] 3R_29803173_SNP [dm6]	T	C	1.787e^-4	0.758	UPSTREAM CG7789 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	676582	2L_676582_SNP [dm3] 2L_676582_SNP [dm6]	A	G	1.793e^-4	0.758	INTRON ds
3L	12282638	3L_12282638_SNP [dm3] 3L_12289538_SNP [dm6]	A	T	1.796e^-4	0.758	EXON CR45658
2R	8440738	2R_8440738_SNP [dm3] 2R_12553233_SNP [dm6]	C	T	1.803e^-4	0.758	INTRON fra
2R	19995276	2R_19995276_SNP [dm3] 2R_24107753_SNP [dm6]	G	A	1.807e^-4	0.758	UTR_3_PRIME CG4049 DOWNSTREAM enok
2R	11079472	2R_11079472_SNP [dm3] 2R_15191967_SNP [dm6]	C	A	1.810e^-4	0.758	DOWNSTREAM Sfp51E INTERGENIC
X	1063696	X_1063696_SNP [dm3] X_1169663_SNP [dm6]	T	G	1.810e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11277185	3R_11277185_SNP [dm3] 3R_15451463_SNP [dm6]	T	G	1.812e^-4	0.758	INTRON AdamTS-A
2R	16849648	2R_16849648_SNP [dm3] 2R_20962143_SNP [dm6]	C	A	1.824e^-4	0.758	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21846992	2L_21846992_SNP [dm3] 2L_21846992_SNP [dm6]	A	C	1.847e^-4	0.758	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	677256	3L_677256_SNP [dm3] 3L_677256_SNP [dm6]	G	T	1.848e^-4	0.758	DOWNSTREAM CG17129 INTERGENIC
3L	9735552	3L_9735552_SNP [dm3] 3L_9742452_SNP [dm6]	T	C	1.850e^-4	0.758	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_inv
2R	8413154	2R_8413154_SNP [dm3] 2R_12525649_SNP [dm6]	C	G	1.852e^-4	0.758	INTERGENIC
3L	12458685	3L_12458685_SNP [dm3] 3L_12465585_SNP [dm6]	A	T	1.853e^-4	0.758	INTRON eyg	TF binding site mE1_TFBS_chinmo
2R	18493194	2R_18493194_SNP [dm3] 2R_22605689_SNP [dm6]	A	C	1.865e^-4	0.758	UPSTREAM RpS16 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2L	21819053	2L_21819053_SNP [dm3] 2L_21819053_SNP [dm6]	C	T	1.866e^-4	0.758	UPSTREAM CR44786 INTERGENIC
2L	21819086	2L_21819086_DEL [dm3] 2L_21819086_DEL [dm6]	TAACTGCGATGATTTGA...	T	1.866e^-4	0.758	UPSTREAM CR44786 INTERGENIC
2L	21830934	2L_21830934_SNP [dm3] 2L_21830934_SNP [dm6]	T	C	1.866e^-4	0.758	INTRON tsh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	21831586	2L_21831586_SNP [dm3] 2L_21831586_SNP [dm6]	A	T	1.866e^-4	0.758	INTRON tsh	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	14121437	X_14121437_SNP [dm3] X_14227404_SNP [dm6]	T	C	1.869e^-4	0.758	SYNONYMOUS_CODING mRpL38 DOWNSTREAM CG42271	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	12082718	3R_12082718_SNP [dm3] 3R_16256996_SNP [dm6]	C	T	1.870e^-4	0.758	SYNONYMOUS_CODING tara	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9561750	2L_9561750_SNP [dm3] 2L_9561750_SNP [dm6]	A	C	1.876e^-4	0.758	INTRON jp
3R	15396891	3R_15396891_SNP [dm3] 3R_19571169_SNP [dm6]	T	C	1.890e^-4	0.758	INTRON Dys	TF binding site BDTNP1_TFBS_z
2L	5290103	2L_5290103_SNP [dm3] 2L_5290103_SNP [dm6]	A	C	1.895e^-4	0.758	INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10396256	2R_10396256_SNP [dm3] 2R_14508751_SNP [dm6]	G	A	1.898e^-4	0.758	SYNONYMOUS_CODING Asx	TF binding site BDTNP1_TFBS_dl
2R	15208003	2R_15208003_SNP [dm3] 2R_19320498_SNP [dm6]	G	A	1.900e^-4	0.758	INTRON Rgk1
3R	10744956	3R_10744956_SNP [dm3] 3R_14919234_SNP [dm6]	G	T	1.903e^-4	0.758	SYNONYMOUS_CODING Sdr
2L	11837076	2L_11837076_DEL [dm3] 2L_11837076_DEL [dm6]	ATCTTATATTCGGGGA...	A	1.904e^-4	0.758	UPSTREAM Sfp33A4 & 2 others INTRON Pde1c	transposable element FlyBase
2R	17577764	2R_17577764_SNP [dm3] 2R_21690259_SNP [dm6]	G	T	1.910e^-4	0.758	UTR_3_PRIME Tim10 & 1 other DOWNSTREAM CG10307	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	1691951	2R_1691951_SNP [dm3] 2R_5804446_SNP [dm6]	G	A	1.912e^-4	0.758	UPSTREAM dpr12 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16987335	3R_16987335_DEL [dm3] 3R_21161613_DEL [dm6]	CT	C	1.913e^-4	0.758	UPSTREAM CG10824 INTRON SNF4Agamma
2R	13195904	2R_13195904_SNP [dm3] 2R_17308399_SNP [dm6]	G	A	1.919e^-4	0.758	INTRON mbl
3R	16295311	3R_16295311_SNP [dm3] 3R_20469589_SNP [dm6]	T	A	1.926e^-4	0.758	INTRON Gfrl
3R	26387847	3R_26387847_SNP [dm3] 3R_30562125_SNP [dm6]	C	A	1.927e^-4	0.758	INTRON tmod	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	15192101	3R_15192101_SNP [dm3] 3R_19366379_SNP [dm6]	A	T	1.934e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3422167	2L_3422167_SNP [dm3] 2L_3422167_SNP [dm6]	A	G	1.934e^-4	0.758	INTRON pgant2
3L	18633099	3L_18633099_SNP [dm3] 3L_18639999_SNP [dm6]	G	C	1.936e^-4	0.758	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	19700952	2L_19700952_SNP [dm3] 2L_19700952_SNP [dm6]	C	A	1.936e^-4	0.758	UTR_5_PRIME scw INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6105778	2L_6105778_SNP [dm3] 2L_6105778_SNP [dm6]	T	A	1.939e^-4	0.758	INTRON stai
2L	21879086	2L_21879086_SNP [dm3] 2L_21879086_SNP [dm6]	C	G	1.951e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9756983	X_9756983_SNP [dm3] X_9862950_SNP [dm6]	A	G	1.954e^-4	0.758	INTERGENIC
X	3030217	X_3030217_SNP [dm3] X_3136184_SNP [dm6]	A	C	1.955e^-4	0.758	INTRON N	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	9564789	2L_9564789_SNP [dm3] 2L_9564789_SNP [dm6]	G	A	1.963e^-4	0.758	INTRON jp
3R	19625264	3R_19625264_SNP [dm3] 3R_23799542_SNP [dm6]	T	C	1.965e^-4	0.758	INTRON mbc
2R	10371206	2R_10371206_SNP [dm3] 2R_14483701_SNP [dm6]	T	C	1.968e^-4	0.758	INTRON L	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19623825	3R_19623825_SNP [dm3] 3R_23798103_SNP [dm6]	G	A	1.970e^-4	0.758	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12281783	2L_12281783_INS [dm3] 2L_12281783_INS [dm6]	T	TTTGT	1.970e^-4	0.758	INTRON aret
3L	15307325	3L_15307325_SNP [dm3] 3L_15314225_SNP [dm6]	A	G	1.977e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	16988899	3R_16988899_SNP [dm3] 3R_21163177_SNP [dm6]	T	A	1.977e^-4	0.758	UPSTREAM CG5810 INTRON SNF4Agamma
3L	15307066	3L_15307066_SNP [dm3] 3L_15313966_SNP [dm6]	G	C	1.979e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	21623015	3R_21623015_INS [dm3] 3R_25797293_INS [dm6]	C	CTGCCGCTT	1.985e^-4	0.758	EXON CR43847
3L	3162829	3L_3162829_SNP [dm3] 3L_3162829_SNP [dm6]	C	T	1.986e^-4	0.758	SYNONYMOUS_CODING rasp DOWNSTREAM pfk & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13364779	2R_13364779_SNP [dm3] 2R_17477274_SNP [dm6]	A	T	1.990e^-4	0.758	UPSTREAM veil DOWNSTREAM CG43110 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	12127428	2L_12127428_SNP [dm3] 2L_12127428_SNP [dm6]	G	C	1.994e^-4	0.758	SYNONYMOUS_CODING CG17211
3R	19776867	3R_19776867_SNP [dm3] 3R_23951145_SNP [dm6]	G	A	1.995e^-4	0.758	DOWNSTREAM Aats-glupro INTERGENIC
2L	9564119	2L_9564119_SNP [dm3] 2L_9564119_SNP [dm6]	A	G	1.997e^-4	0.758	INTRON jp
X	5495954	X_5495954_SNP [dm3] X_5601921_SNP [dm6]	C	T	2.006e^-4	0.758	INTRON Vsx1	TF binding site BDTNP1_TFBS_dl
2L	12695200	2L_12695200_SNP [dm3] 2L_12695200_SNP [dm6]	C	T	2.009e^-4	0.758	UPSTREAM PICK1 & 1 other INTRON PICK1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14676091	3L_14676091_SNP [dm3] 3L_14682991_SNP [dm6]	C	G	2.015e^-4	0.758	INTRON ome
X	17078271	X_17078271_SNP [dm3] X_17184238_SNP [dm6]	T	C	2.019e^-4	0.758	UPSTREAM CR44026 INTRON baz
2R	17799133	2R_17799133_SNP [dm3] 2R_21911628_SNP [dm6]	C	T	2.020e^-4	0.758	INTRON Fili
2R	10344128	2R_10344128_SNP [dm3] 2R_14456623_SNP [dm6]	G	A	2.022e^-4	0.758	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21794158	2L_21794158_INS [dm3] 2L_21794158_INS [dm6]	G	AATAATATGT	2.025e^-4	0.758	INTRON CG31612	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	16973912	2R_16973912_SNP [dm3] 2R_21086407_SNP [dm6]	C	T	2.028e^-4	0.758	SYNONYMOUS_CODING Treh	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	5891752	3L_5891752_SNP [dm3] 3L_5898652_SNP [dm6]	A	C	2.032e^-4	0.758	NON_SYNONYMOUS_CODING CG5592 UPSTREAM CG32409	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18589261	3R_18589261_SNP [dm3] 3R_22763539_SNP [dm6]	A	T	2.039e^-4	0.758	NON_SYNONYMOUS_CODING CG4723 DOWNSTREAM CG4721 INTRON Usp12-46 & 1 other
3L	20850935	3L_20850935_SNP [dm3] 3L_20857835_SNP [dm6]	T	A	2.041e^-4	0.758	INTRON CG32432
2L	12281707	2L_12281707_SNP [dm3] 2L_12281707_SNP [dm6]	T	C	2.044e^-4	0.758	INTRON aret
3L	12282654	3L_12282654_SNP [dm3] 3L_12289554_SNP [dm6]	C	G	2.046e^-4	0.758	EXON CR45658
3L	3282181	3L_3282181_SNP [dm3] 3L_3282181_SNP [dm6]	T	G	2.048e^-4	0.758	INTRON CG12017
3L	19131521	3L_19131521_SNP [dm3] 3L_19138421_SNP [dm6]	C	T	2.050e^-4	0.758	INTRON CG14082
3L	12213689	3L_12213689_SNP [dm3] 3L_12220589_SNP [dm6]	C	A	2.052e^-4	0.758	UTR_5_PRIME app
2L	3301950	2L_3301950_SNP [dm3] 2L_3301950_SNP [dm6]	A	G	2.058e^-4	0.758	INTRON CG9663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	19789683	X_19789683_SNP [dm3] X_19895650_SNP [dm6]	T	C	2.062e^-4	0.758	INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	15394517	2R_15394517_SNP [dm3] 2R_19507012_SNP [dm6]	A	G	2.074e^-4	0.758	UPSTREAM tRNA:H:56E INTERGENIC
3L	1646793	3L_1646793_SNP [dm3] 3L_1646793_SNP [dm6]	G	A	2.076e^-4	0.758	NON_SYNONYMOUS_CODING CG17249 DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14724847	2R_14724847_SNP [dm3] 2R_18837342_SNP [dm6]	G	T	2.079e^-4	0.758	NON_SYNONYMOUS_CODING CG15099 UTR_3_PRIME CG15099 DOWNSTREAM CG15083
2L	12686333	2L_12686333_SNP [dm3] 2L_12686333_SNP [dm6]	G	T	2.082e^-4	0.758	DOWNSTREAM pdm2 INTERGENIC
3L	9725312	3L_9725312_SNP [dm3] 3L_9732212_SNP [dm6]	C	G	2.083e^-4	0.758	SYNONYMOUS_CODING CG6749 DOWNSTREAM ATPsyn-b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1986147	2L_1986147_SNP [dm3] 2L_1986147_SNP [dm6]	C	T	2.086e^-4	0.758	INTRON Got2
2L	9564582	2L_9564582_SNP [dm3] 2L_9564582_SNP [dm6]	G	A	2.088e^-4	0.758	INTRON jp
2R	17283287	2R_17283287_SNP [dm3] 2R_21395782_SNP [dm6]	A	T	2.089e^-4	0.758	INTRON Sdc
3L	4678283	3L_4678283_SNP [dm3] 3L_4678283_SNP [dm6]	T	A	2.090e^-4	0.758	DOWNSTREAM CG34266 INTRON axo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16406653	2R_16406653_SNP [dm3] 2R_20519148_SNP [dm6]	T	A	2.091e^-4	0.758	INTERGENIC
3R	21387627	3R_21387627_SNP [dm3] 3R_25561905_SNP [dm6]	G	A	2.091e^-4	0.758	INTRON msi
3L	9717931	3L_9717931_SNP [dm3] 3L_9724831_SNP [dm6]	G	T	2.093e^-4	0.758	SYNONYMOUS_CODING defl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20821277	3L_20821277_SNP [dm3] 3L_20828177_SNP [dm6]	C	T	2.096e^-4	0.758	UTR_5_PRIME Pka-R1 UPSTREAM Pka-R1 INTRON Pka-R1
2L	14795303	2L_14795303_SNP [dm3] 2L_14795303_SNP [dm6]	T	A	2.109e^-4	0.758	UTR_3_PRIME CG18420
3L	15801058	3L_15801058_SNP [dm3] 3L_15807958_SNP [dm6]	C	A	2.114e^-4	0.758	UPSTREAM CG6244 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7449900	2L_7449900_SNP [dm3] 2L_7449900_SNP [dm6]	T	A	2.116e^-4	0.758	UTR_5_PRIME santa-maria INTRON santa-maria
X	901390	X_901390_SNP [dm3] X_1007357_SNP [dm6]	G	T	2.116e^-4	0.758	INTERGENIC
3L	2172379	3L_2172379_SNP [dm3] 3L_2172379_SNP [dm6]	G	A	2.117e^-4	0.758	DOWNSTREAM CG15820 EXON CR15821
2R	1631577	2R_1631577_SNP [dm3] 2R_5744072_SNP [dm6]	A	T	2.120e^-4	0.758	INTERGENIC	regulatory region REDfly_CRMs
2R	11530618	2R_11530618_DEL [dm3] 2R_15643113_DEL [dm6]	AATA	A	2.123e^-4	0.758	INTRON CG42524
3L	9515430	3L_9515430_SNP [dm3] 3L_9522330_SNP [dm6]	A	G	2.131e^-4	0.758	INTRON CG33700
3L	2284889	3L_2284889_SNP [dm3] 3L_2284889_SNP [dm6]	G	A	2.132e^-4	0.758	INTRON MsR2
3L	3285689	3L_3285689_DEL [dm3] 3L_3285689_DEL [dm6]	TTGGCGCCAGATGAATAA...	C	2.141e^-4	0.758	INTRON CG12017
X	5251186	X_5251186_SNP [dm3] X_5357153_SNP [dm6]	G	A	2.143e^-4	0.758	INTRON SK
3L	15691815	3L_15691815_DEL [dm3] 3L_15698715_DEL [dm6]	TT	T	2.153e^-4	0.758	INTRON comm2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_hkb mE1_TFBS_Trl
2L	2802828	2L_2802828_SNP [dm3] 2L_2802828_SNP [dm6]	A	G	2.155e^-4	0.758	INTERGENIC
3L	4840543	3L_4840543_SNP [dm3] 3L_4840543_SNP [dm6]	A	T	2.156e^-4	0.758	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	14288253	X_14288253_SNP [dm3] X_14394220_SNP [dm6]	T	C	2.163e^-4	0.758	INTRON dpr8
3R	8481207	3R_8481207_SNP [dm3] 3R_12655485_SNP [dm6]	G	C	2.164e^-4	0.758	INTRON CG6225
2L	5181620	2L_5181620_SNP [dm3] 2L_5181620_SNP [dm6]	C	A	2.166e^-4	0.758	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_HSA
X	20268609	X_20268609_SNP [dm3] X_20397582_SNP [dm6]	A	G	2.182e^-4	0.758	INTRON HERC2	transposable element FlyBase
3R	16291562	3R_16291562_SNP [dm3] 3R_20465840_SNP [dm6]	G	A	2.187e^-4	0.758	INTRON Gfrl
3L	12282646	3L_12282646_SNP [dm3] 3L_12289546_SNP [dm6]	G	T	2.191e^-4	0.758	EXON CR45658
3R	3441313	3R_3441313_SNP [dm3] 3R_7615591_SNP [dm6]	C	T	2.193e^-4	0.758	INTRON CG34127
3L	9962441	3L_9962441_SNP [dm3] 3L_9969341_SNP [dm6]	A	C	2.198e^-4	0.758	INTRON Nc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h
3R	26722453	3R_26722453_SNP [dm3] 3R_30896731_SNP [dm6]	T	A	2.198e^-4	0.758	INTRON Cyp4c3
2R	18460132	2R_18460132_SNP [dm3] 2R_22572627_SNP [dm6]	T	G	2.199e^-4	0.758	INTRON dnr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4027493	2L_4027493_SNP [dm3] 2L_4027493_SNP [dm6]	C	T	2.201e^-4	0.758	INTERGENIC
3L	15306050	3L_15306050_SNP [dm3] 3L_15312950_SNP [dm6]	C	T	2.202e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3R	26728585	3R_26728585_SNP [dm3] 3R_30902863_SNP [dm6]	T	A	2.206e^-4	0.758	UPSTREAM CG33483 INTERGENIC
2R	17475471	2R_17475471_SNP [dm3] 2R_21587966_SNP [dm6]	C	T	2.207e^-4	0.758	INTERGENIC
3R	10691888	3R_10691888_INS [dm3] 3R_14866166_INS [dm6]	T	TT	2.212e^-4	0.758	INTRON btsz
2R	16817260	2R_16817260_SNP [dm3] 2R_20929755_SNP [dm6]	T	G	2.213e^-4	0.758	INTRON Rx
2R	11730831	2R_11730831_SNP [dm3] 2R_15843326_SNP [dm6]	C	A	2.219e^-4	0.758	UTR_3_PRIME CG8249 DOWNSTREAM CG8249 INTRON tun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	18199282	3L_18199282_SNP [dm3] 3L_18206182_SNP [dm6]	C	A	2.228e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	16249565	2R_16249565_SNP [dm3] 2R_20362060_SNP [dm6]	G	T	2.228e^-4	0.758	INTERGENIC
2R	15267497	2R_15267497_SNP [dm3] 2R_19379992_SNP [dm6]	G	A	2.232e^-4	0.758	SYNONYMOUS_CODING CG10062 UPSTREAM CG10073
3L	20807935	3L_20807935_SNP [dm3] 3L_20814835_SNP [dm6]	T	A	2.234e^-4	0.758	NON_SYNONYMOUS_CODING CG3618	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	7484430	3L_7484430_SNP [dm3] 3L_7491330_SNP [dm6]	G	A	2.247e^-4	0.758	UPSTREAM Cyp316a1 INTERGENIC
2R	7106151	2R_7106151_SNP [dm3] 2R_11218646_SNP [dm6]	A	G	2.255e^-4	0.758	UPSTREAM Syx6 INTRON CG9084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11475300	2L_11475300_SNP [dm3] 2L_11475300_SNP [dm6]	A	T	2.262e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_ttk
2L	12291645	2L_12291645_SNP [dm3] 2L_12291645_SNP [dm6]	A	T	2.263e^-4	0.758	INTRON aret
3L	782242	3L_782242_INS [dm3] 3L_782242_INS [dm6]	T	TGCTTT	2.264e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna
2R	12117897	2R_12117897_SNP [dm3] 2R_16230392_SNP [dm6]	C	A	2.267e^-4	0.758	UTR_5_PRIME CG15706 DOWNSTREAM Tsf3 INTRON CG15701	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3L	8522398	3L_8522398_INS [dm3] 3L_8529298_INS [dm6]	T	TACA	2.283e^-4	0.758	INTRON foi
2L	8442167	2L_8442167_SNP [dm3] 2L_8442167_SNP [dm6]	A	G	2.286e^-4	0.758	NON_SYNONYMOUS_CODING mus201 UPSTREAM CG31897
2R	19820053	2R_19820053_SNP [dm3] 2R_23932530_SNP [dm6]	A	T	2.291e^-4	0.758	INTRON Ca-P60A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_sens
3L	14314146	3L_14314146_SNP [dm3] 3L_14321046_SNP [dm6]	T	G	2.293e^-4	0.758	INTRON fz
3L	7138280	3L_7138280_SNP [dm3] 3L_7145180_SNP [dm6]	G	A	2.305e^-4	0.758	SPLICE_SITE_REGION corn INTRON corn
3L	7138294	3L_7138294_SNP [dm3] 3L_7145194_SNP [dm6]	G	C	2.305e^-4	0.758	INTRON corn
2R	11610326	2R_11610326_SNP [dm3] 2R_15722821_SNP [dm6]	A	G	2.315e^-4	0.758	INTERGENIC
2L	13747860	2L_13747860_SNP [dm3] 2L_13747860_SNP [dm6]	T	A	2.316e^-4	0.758	UPSTREAM mir-1002 & 1 other INTRON CR44846 & 1 other
X	7862798	X_7862798_SNP [dm3] X_7968765_SNP [dm6]	T	C	2.322e^-4	0.758	UPSTREAM sws & 1 other INTRON sn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	8915134	3L_8915134_SNP [dm3] 3L_8922034_SNP [dm6]	G	T	2.322e^-4	0.758	INTRON Tsp66E
2L	8236236	2L_8236236_SNP [dm3] 2L_8236236_SNP [dm6]	T	C	2.329e^-4	0.758	INTRON Pvr
X	1065446	X_1065446_SNP [dm3] X_1171413_SNP [dm6]	T	G	2.337e^-4	0.758	UTR_5_PRIME CG11378 UPSTREAM CG11378
3L	11252486	3L_11252486_SNP [dm3] 3L_11259386_SNP [dm6]	A	G	2.343e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	6673200	X_6673200_SNP [dm3] X_6779167_SNP [dm6]	G	A	2.351e^-4	0.758	INTRON shf	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9704923	3L_9704923_SNP [dm3] 3L_9711823_SNP [dm6]	A	G	2.353e^-4	0.758	SYNONYMOUS_CODING SH3PX1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	393289	3L_393289_SNP [dm3] 3L_393289_SNP [dm6]	G	A	2.353e^-4	0.758	UPSTREAM CR43969 & 2 others INTERGENIC	TF binding site mE1_TFBS_Trl
3R	19458947	3R_19458947_SNP [dm3] 3R_23633225_SNP [dm6]	G	A	2.356e^-4	0.758	INTRON CG31145	TF binding site BDTNP1_TFBS_twi
X	12937534	X_12937534_SNP [dm3] X_13043501_SNP [dm6]	A	C	2.362e^-4	0.758	INTRON rad
2R	18285090	2R_18285090_SNP [dm3] 2R_22397585_SNP [dm6]	T	A	2.373e^-4	0.758	INTRON babos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10733914	3L_10733914_SNP [dm3] 3L_10740814_SNP [dm6]	T	G	2.374e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3659231	X_3659231_INS [dm3] X_3765198_INS [dm6]	A	TATCAACGTTT...	2.374e^-4	0.758	INTRON tlk
2L	717914	2L_717914_SNP [dm3] 2L_717914_SNP [dm6]	T	C	2.387e^-4	0.758	INTERGENIC
3L	10861554	3L_10861554_SNP [dm3] 3L_10868454_SNP [dm6]	A	G	2.388e^-4	0.758	INTRON tna
2L	9213400	2L_9213400_SNP [dm3] 2L_9213400_SNP [dm6]	T	A	2.396e^-4	0.758	INTRON tai
3L	3279645	3L_3279645_SNP [dm3] 3L_3279645_SNP [dm6]	T	A	2.408e^-4	0.758	UPSTREAM CG12017 INTERGENIC
3L	12370064	3L_12370064_SNP [dm3] 3L_12376964_SNP [dm6]	G	A	2.411e^-4	0.758	INTRON Ncc69
2L	1057481	2L_1057481_SNP [dm3] 2L_1057481_SNP [dm6]	T	C	2.412e^-4	0.758	INTRON S	TF binding site mE1_TFBS_sens
3R	8478814	3R_8478814_SNP [dm3] 3R_12653092_SNP [dm6]	T	A	2.419e^-4	0.758	DOWNSTREAM Dtg INTERGENIC
2L	8010151	2L_8010151_SNP [dm3] 2L_8010151_SNP [dm6]	G	C	2.434e^-4	0.758	NON_SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	16077616	2L_16077616_MNP [dm3] 2L_16077616_MNP [dm6]	AAGA	TCCT	2.439e^-4	0.758	INTRON beat-Ia
3L	2338104	3L_2338104_SNP [dm3] 3L_2338104_SNP [dm6]	C	T	2.442e^-4	0.758	INTRON MsR1
2L	11881876	2L_11881876_SNP [dm3] 2L_11881876_SNP [dm6]	T	C	2.442e^-4	0.758	INTRON Pde1c
2L	3519966	2L_3519966_SNP [dm3] 2L_3519966_SNP [dm6]	A	C	2.443e^-4	0.758	UPSTREAM CG8851 & 1 other INTRON CG8851
2L	15759696	2L_15759696_SNP [dm3] 2L_15759696_SNP [dm6]	G	A	2.446e^-4	0.758	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9722600	3L_9722600_SNP [dm3] 3L_9729500_SNP [dm6]	C	G	2.470e^-4	0.758	UTR_3_PRIME Naa60 UPSTREAM ATPsyn-b DOWNSTREAM Naa60
X	7136147	X_7136147_SNP [dm3] X_7242114_SNP [dm6]	A	T	2.471e^-4	0.758	DOWNSTREAM CG9650 INTRON CR44357	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3L	15307008	3L_15307008_SNP [dm3] 3L_15313908_SNP [dm6]	C	T	2.479e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	14282282	2R_14282282_SNP [dm3] 2R_18394777_SNP [dm6]	C	T	2.483e^-4	0.758	SYNONYMOUS_CODING Idgf5
3R	3062142	3R_3062142_INS [dm3] 3R_7236420_INS [dm6]	G	GGCG	2.484e^-4	0.758	INTRON CG14608
3L	14366853	3L_14366853_SNP [dm3] 3L_14373753_SNP [dm6]	T	A	2.489e^-4	0.758	INTERGENIC
X	3324888	X_3324888_SNP [dm3] X_3430855_SNP [dm6]	G	T	2.504e^-4	0.758	INTRON CR44999 & 1 other
3L	4841144	3L_4841144_SNP [dm3] 3L_4841144_SNP [dm6]	C	T	2.508e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	16294728	3R_16294728_SNP [dm3] 3R_20469006_SNP [dm6]	C	T	2.509e^-4	0.758	INTRON Gfrl
2L	1057517	2L_1057517_SNP [dm3] 2L_1057517_SNP [dm6]	T	A	2.513e^-4	0.758	INTRON S	TF binding site mE1_TFBS_sens
2R	17558222	2R_17558222_SNP [dm3] 2R_21670717_SNP [dm6]	C	G	2.518e^-4	0.758	SYNONYMOUS_CODING NC2alpha UPSTREAM CG9865 & 4 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2149245	3L_2149245_SNP [dm3] 3L_2149245_SNP [dm6]	G	T	2.525e^-4	0.758	INTRON zormin
X	6103026	X_6103026_SNP [dm3] X_6208993_SNP [dm6]	G	A	2.527e^-4	0.758	INTERGENIC
3R	12361420	3R_12361420_SNP [dm3] 3R_16535698_SNP [dm6]	A	G	2.532e^-4	0.758	INTRON CG42342	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	20033748	3L_20033748_SNP [dm3] 3L_20040648_SNP [dm6]	T	A	2.554e^-4	0.758	INTERGENIC	transposable element FlyBase
2L	11222790	2L_11222790_DEL [dm3] 2L_11222790_DEL [dm6]	TTTG	T	2.554e^-4	0.758	INTRON ab
2R	17919986	2R_17919986_SNP [dm3] 2R_22032481_SNP [dm6]	T	C	2.560e^-4	0.758	INTRON CG34370
3L	13069155	3L_13069155_SNP [dm3] 3L_13076055_SNP [dm6]	C	T	2.565e^-4	0.758	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da
2R	19995053	2R_19995053_SNP [dm3] 2R_24107530_SNP [dm6]	A	T	2.567e^-4	0.758	UTR_3_PRIME CG4049 DOWNSTREAM enok
2L	19701076	2L_19701076_SNP [dm3] 2L_19701076_SNP [dm6]	C	G	2.570e^-4	0.758	UPSTREAM scw INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25823085	3R_25823085_SNP [dm3] 3R_29997363_SNP [dm6]	G	A	2.583e^-4	0.758	SYNONYMOUS_CODING CG15525 UPSTREAM CG11504 DOWNSTREAM Sas-6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	9718366	3L_9718366_SNP [dm3] 3L_9725266_SNP [dm6]	G	A	2.592e^-4	0.758	SYNONYMOUS_CODING defl
2L	13949632	2L_13949632_SNP [dm3] 2L_13949632_SNP [dm6]	A	T	2.597e^-4	0.758	INTRON Ance-3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16965266	2R_16965266_SNP [dm3] 2R_21077761_SNP [dm6]	G	A	2.601e^-4	0.758	INTRON Treh
3L	1086478	3L_1086478_SNP [dm3] 3L_1086478_SNP [dm6]	C	T	2.612e^-4	0.758	INTRON bab1
3R	10984305	3R_10984305_SNP [dm3] 3R_15158583_SNP [dm6]	G	C	2.615e^-4	0.758	INTRON Gyc88E
X	20790674	X_20790674_SNP [dm3] X_20919647_SNP [dm6]	G	A	2.631e^-4	0.758	INTRON shakB	insulator Insulator_Class_II.mE01
2R	16151640	2R_16151640_SNP [dm3] 2R_20264135_SNP [dm6]	T	A	2.636e^-4	0.758	UPSTREAM plu & 1 other DOWNSTREAM CR43812 INTRON RpS18	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16965135	2R_16965135_SNP [dm3] 2R_21077630_SNP [dm6]	C	T	2.648e^-4	0.758	INTRON Treh
3L	9715826	3L_9715826_SNP [dm3] 3L_9722726_SNP [dm6]	A	G	2.657e^-4	0.758	SYNONYMOUS_CODING nbs UPSTREAM defl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	3279657	3L_3279657_SNP [dm3] 3L_3279657_SNP [dm6]	T	A	2.663e^-4	0.758	UPSTREAM CG12017 INTERGENIC
3L	7484642	3L_7484642_SNP [dm3] 3L_7491542_SNP [dm6]	T	C	2.681e^-4	0.758	UPSTREAM Cyp316a1 INTERGENIC
3L	5434953	3L_5434953_SNP [dm3] 3L_5441853_SNP [dm6]	A	G	2.685e^-4	0.758	UTR_3_PRIME CG34391
2L	14733735	2L_14733735_SNP [dm3] 2L_14733735_SNP [dm6]	T	G	2.691e^-4	0.758	UPSTREAM CR44857 INTERGENIC	TF binding site mE1_TFBS_inv
3L	17956177	3L_17956177_SNP [dm3] 3L_17963077_SNP [dm6]	G	C	2.691e^-4	0.758	INTRON Eip75B	TF binding site mE1_TFBS_Trl
2L	21893499	2L_21893499_SNP [dm3] 2L_21893499_SNP [dm6]	G	A	2.692e^-4	0.758	UPSTREAM CR43762 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	1649136	2L_1649136_SNP [dm3] 2L_1649136_SNP [dm6]	T	C	2.695e^-4	0.758	INTERGENIC
2R	20345603	2R_20345603_SNP [dm3] 2R_24458080_SNP [dm6]	T	A	2.696e^-4	0.758	INTRON CG13579
2L	16083266	2L_16083266_SNP [dm3] 2L_16083266_SNP [dm6]	A	T	2.699e^-4	0.758	INTERGENIC
3R	16987128	3R_16987128_SNP [dm3] 3R_21161406_SNP [dm6]	A	G	2.701e^-4	0.758	UPSTREAM CG10824 INTRON SNF4Agamma
2L	10318211	2L_10318211_SNP [dm3] 2L_10318211_SNP [dm6]	C	T	2.701e^-4	0.758	NON_SYNONYMOUS_CODING CG5381 DOWNSTREAM CG4972	TF binding site mE1_TFBS_sens
2L	9561704	2L_9561704_SNP [dm3] 2L_9561704_SNP [dm6]	G	A	2.705e^-4	0.758	INTRON jp
2L	2602377	2L_2602377_SNP [dm3] 2L_2602377_SNP [dm6]	C	T	2.706e^-4	0.758	UPSTREAM CR44789 INTERGENIC
3R	15412306	3R_15412306_SNP [dm3] 3R_19586584_SNP [dm6]	C	A	2.708e^-4	0.758	DOWNSTREAM snoRNA:Me18S-A1374 INTRON Dys	TF binding site mE1_TFBS_cad
X	186131	X_186131_INS [dm3] X_292098_INS [dm6]	A	AGACAATGTCGACTGTAAAA...	2.711e^-4	0.758	INTRON CG3777 & 1 other
2L	2884616	2L_2884616_SNP [dm3] 2L_2884616_SNP [dm6]	C	T	2.712e^-4	0.758	INTRON NTPase	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_Trl
3L	3531585	3L_3531585_SNP [dm3] 3L_3531585_SNP [dm6]	A	C	2.721e^-4	0.758	INTRON Eip63E
3R	446388	3R_446388_SNP [dm3] 3R_4620666_SNP [dm6]	A	G	2.724e^-4	0.758	INTRON 5-HT2A
3L	9316743	3L_9316743_SNP [dm3] 3L_9323643_SNP [dm6]	A	G	2.724e^-4	0.758	INTERGENIC
2R	4192977	2R_4192977_SNP [dm3] 2R_8305472_SNP [dm6]	A	T	2.727e^-4	0.758	DOWNSTREAM CR44447 INTERGENIC
X	9287766	X_9287766_SNP [dm3] X_9393733_SNP [dm6]	T	C	2.728e^-4	0.758	INTRON mgl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	19562268	3L_19562268_SNP [dm3] 3L_19569168_SNP [dm6]	A	G	2.731e^-4	0.758	INTRON Shal
2L	21797225	2L_21797225_SNP [dm3] 2L_21797225_SNP [dm6]	C	A	2.735e^-4	0.758	DOWNSTREAM CR44269 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	7470072	3L_7470072_SNP [dm3] 3L_7476972_SNP [dm6]	T	A	2.737e^-4	0.758	DOWNSTREAM CG43292 INTERGENIC
2R	19339513	2R_19339513_SNP [dm3] 2R_23451990_SNP [dm6]	T	C	2.742e^-4	0.758	INTRON CG43795
3R	8068496	3R_8068496_SNP [dm3] 3R_12242774_SNP [dm6]	C	A	2.743e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12370122	3L_12370122_SNP [dm3] 3L_12377022_SNP [dm6]	A	G	2.744e^-4	0.758	INTRON Ncc69
2L	14734601	2L_14734601_DEL [dm3] 2L_14734601_DEL [dm6]	GA	G	2.749e^-4	0.758	INTERGENIC	TF binding site mE1_TFBS_inv
3L	5712238	3L_5712238_SNP [dm3] 3L_5719138_SNP [dm6]	G	A	2.751e^-4	0.758	INTRON sif
3R	15311973	3R_15311973_SNP [dm3] 3R_19486251_SNP [dm6]	G	A	2.751e^-4	0.758	UPSTREAM Dys INTRON Dys
2R	20356221	2R_20356221_SNP [dm3] 2R_24468698_SNP [dm6]	A	C	2.751e^-4	0.758	INTRON CG13579
3L	6557134	3L_6557134_SNP [dm3] 3L_6564034_SNP [dm6]	C	T	2.762e^-4	0.758	SYNONYMOUS_CODING jv INTRON CG18769	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	1064758	X_1064758_SNP [dm3] X_1170725_SNP [dm6]	C	A	2.762e^-4	0.758	UPSTREAM CG11378 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	16077819	2L_16077819_SNP [dm3] 2L_16077819_SNP [dm6]	T	C	2.771e^-4	0.758	INTRON beat-Ia
3L	5704682	3L_5704682_SNP [dm3] 3L_5711582_SNP [dm6]	G	A	2.779e^-4	0.758	INTRON sif	TF binding site mE1_TFBS_chinmo
2R	17920061	2R_17920061_SNP [dm3] 2R_22032556_SNP [dm6]	A	G	2.779e^-4	0.758	INTRON CG34370
3R	480817	3R_480817_SNP [dm3] 3R_4655095_SNP [dm6]	A	C	2.782e^-4	0.758	UPSTREAM spartin DOWNSTREAM Karybeta3 INTRON spartin	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
2R	17919988	2R_17919988_SNP [dm3] 2R_22032483_SNP [dm6]	T	C	2.787e^-4	0.758	INTRON CG34370
2L	21795652	2L_21795652_SNP [dm3] 2L_21795652_SNP [dm6]	A	T	2.789e^-4	0.758	UPSTREAM CG31612 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk transposable element FlyBase
2L	6107830	2L_6107830_SNP [dm3] 2L_6107830_SNP [dm6]	C	T	2.790e^-4	0.758	INTRON stai
2L	6100998	2L_6100998_INS [dm3] 2L_6100998_INS [dm6]	T	TATG	2.791e^-4	0.758	INTRON stai	TF binding site BDTNP1_TFBS_dl
X	3331906	X_3331906_SNP [dm3] X_3437873_SNP [dm6]	C	T	2.796e^-4	0.758	INTRON CR44999 & 1 other
3R	10744806	3R_10744806_SNP [dm3] 3R_14919084_SNP [dm6]	C	A	2.797e^-4	0.758	SYNONYMOUS_CODING Sdr
2L	5086558	2L_5086558_SNP [dm3] 2L_5086558_SNP [dm6]	A	C	2.799e^-4	0.758	INTRON pgant5
2R	10339989	2R_10339989_SNP [dm3] 2R_14452484_SNP [dm6]	C	T	2.812e^-4	0.758	INTRON Oaz
2R	16973642	2R_16973642_SNP [dm3] 2R_21086137_SNP [dm6]	G	A	2.812e^-4	0.758	SYNONYMOUS_CODING Treh	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16295315	3R_16295315_SNP [dm3] 3R_20469593_SNP [dm6]	T	G	2.818e^-4	0.758	INTRON Gfrl
3L	2172367	3L_2172367_SNP [dm3] 3L_2172367_SNP [dm6]	G	A	2.823e^-4	0.758	DOWNSTREAM CG15820 EXON CR15821
3L	3588771	3L_3588771_SNP [dm3] 3L_3588771_SNP [dm6]	A	T	2.825e^-4	0.758	INTRON Eip63E
3L	10699757	3L_10699757_SNP [dm3] 3L_10706657_SNP [dm6]	A	G	2.833e^-4	0.758	INTERGENIC
X	1048565	X_1048565_SNP [dm3] X_1154532_SNP [dm6]	A	G	2.834e^-4	0.758	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	5931336	2L_5931336_DEL [dm3] 2L_5931336_DEL [dm6]	GTTTACAA	G	2.834e^-4	0.758	INTRON dsf
2L	1995382	2L_1995382_SNP [dm3] 2L_1995382_SNP [dm6]	C	T	2.837e^-4	0.758	INTERGENIC
3R	9330137	3R_9330137_SNP [dm3] 3R_13504415_SNP [dm6]	G	A	2.841e^-4	0.758	INTERGENIC
3R	13387842	3R_13387842_SNP [dm3] 3R_17562120_SNP [dm6]	T	C	2.841e^-4	0.758	INTRON Hmx	TF binding site mE1_TFBS_sens
3L	12148607	3L_12148607_SNP [dm3] 3L_12155507_SNP [dm6]	A	G	2.844e^-4	0.758	SYNONYMOUS_CODING Nrx-IV
2L	8436236	2L_8436236_SNP [dm3] 2L_8436236_SNP [dm6]	G	C	2.845e^-4	0.758	INTRON D12	TF binding site mE1_TFBS_sens
2L	8436259	2L_8436259_SNP [dm3] 2L_8436259_SNP [dm6]	C	T	2.845e^-4	0.758	INTRON D12	TF binding site mE1_TFBS_sens
2L	8436278	2L_8436278_SNP [dm3] 2L_8436278_SNP [dm6]	T	C	2.845e^-4	0.758	INTRON D12	TF binding site mE1_TFBS_sens
2L	8436402	2L_8436402_SNP [dm3] 2L_8436402_SNP [dm6]	T	C	2.845e^-4	0.758	SYNONYMOUS_CODING D12	TF binding site mE1_TFBS_sens
2L	8436423	2L_8436423_SNP [dm3] 2L_8436423_SNP [dm6]	G	A	2.845e^-4	0.758	SYNONYMOUS_CODING D12 UPSTREAM Chrac-14	TF binding site mE1_TFBS_sens
3R	15387057	3R_15387057_SNP [dm3] 3R_19561335_SNP [dm6]	C	T	2.846e^-4	0.758	INTRON Dys
3L	1703501	3L_1703501_SNP [dm3] 3L_1703501_SNP [dm6]	C	T	2.846e^-4	0.758	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1703505	3L_1703505_SNP [dm3] 3L_1703505_SNP [dm6]	T	A	2.846e^-4	0.758	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12370070	3L_12370070_SNP [dm3] 3L_12376970_SNP [dm6]	C	G	2.849e^-4	0.758	INTRON Ncc69
3L	15883083	3L_15883083_SNP [dm3] 3L_15889983_SNP [dm6]	G	T	2.864e^-4	0.758	INTRON pHCl
3L	7257654	3L_7257654_SNP [dm3] 3L_7264554_SNP [dm6]	G	T	2.864e^-4	0.758	UPSTREAM CG14830 INTERGENIC
2R	19820031	2R_19820031_SNP [dm3] 2R_23932508_SNP [dm6]	T	A	2.867e^-4	0.758	INTRON Ca-P60A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_sens
3L	13426405	3L_13426405_SNP [dm3] 3L_13433305_SNP [dm6]	A	C	2.872e^-4	0.758	DOWNSTREAM tRNA:V4:70BCa & 1 other INTRON CG10713
2R	8616786	2R_8616786_SNP [dm3] 2R_12729281_SNP [dm6]	G	T	2.880e^-4	0.758	INTRON CG42663
3R	14597551	3R_14597551_SNP [dm3] 3R_18771829_SNP [dm6]	T	G	2.884e^-4	0.758	INTRON CG7720
2L	17916466	2L_17916466_SNP [dm3] 2L_17916466_SNP [dm6]	C	A	2.892e^-4	0.758	INTERGENIC
2R	14984423	2R_14984423_SNP [dm3] 2R_19096918_SNP [dm6]	A	C	2.898e^-4	0.758	UPSTREAM Ir56a INTRON 5-HT1A
3L	7001813	3L_7001813_SNP [dm3] 3L_7008713_SNP [dm6]	T	C	2.899e^-4	0.758	INTRON Mp
2L	7919744	2L_7919744_SNP [dm3] 2L_7919744_SNP [dm6]	C	T	2.908e^-4	0.758	INTRON Snoo
2L	12308832	2L_12308832_DEL [dm3] 2L_12308832_DEL [dm6]	TT	T	2.910e^-4	0.758	INTRON aret
2L	3880200	2L_3880200_SNP [dm3] 2L_3880200_SNP [dm6]	T	C	2.913e^-4	0.758	UPSTREAM capu INTRON capu
X	8286930	X_8286930_DEL [dm3] X_8392897_DEL [dm6]	CC	C	2.913e^-4	0.758	INTERGENIC
3L	337491	3L_337491_SNP [dm3] 3L_337491_SNP [dm6]	C	T	2.920e^-4	0.758	INTRON Ptpmeg & 1 other
3L	11824240	3L_11824240_SNP [dm3] 3L_11831140_SNP [dm6]	G	A	2.925e^-4	0.758	DOWNSTREAM CG7264 INTRON CycA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	9884542	X_9884542_SNP [dm3] X_9990509_SNP [dm6]	T	C	2.925e^-4	0.758	INTRON CG32694
3L	4751170	3L_4751170_SNP [dm3] 3L_4751170_SNP [dm6]	T	A	2.927e^-4	0.758	INTRON RhoGEF64C
3R	16294815	3R_16294815_SNP [dm3] 3R_20469093_SNP [dm6]	G	A	2.933e^-4	0.758	INTRON Gfrl
2L	9560973	2L_9560973_SNP [dm3] 2L_9560973_SNP [dm6]	T	C	2.934e^-4	0.758	UPSTREAM jp INTRON jp
2L	3629942	2L_3629942_SNP [dm3] 2L_3629942_SNP [dm6]	C	T	2.936e^-4	0.758	INTRON for
2R	18453286	2R_18453286_SNP [dm3] 2R_22565781_SNP [dm6]	G	A	2.937e^-4	0.758	SYNONYMOUS_CODING dnr1	TF binding site mE1_TFBS_cad
3L	4678248	3L_4678248_SNP [dm3] 3L_4678248_SNP [dm6]	G	A	2.940e^-4	0.758	DOWNSTREAM CG34266 INTRON axo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3792815	2L_3792815_SNP [dm3] 2L_3792815_SNP [dm6]	A	T	2.944e^-4	0.758	INTRON CG3921
X	13462851	X_13462851_SNP [dm3] X_13568818_SNP [dm6]	T	G	2.949e^-4	0.758	INTRON Tango13
3L	4118164	3L_4118164_SNP [dm3] 3L_4118164_SNP [dm6]	C	T	2.951e^-4	0.758	INTRON Chd64
3R	10136884	3R_10136884_SNP [dm3] 3R_14311162_SNP [dm6]	T	A	2.952e^-4	0.758	DOWNSTREAM RpII15 INTRON CG31321
2L	5395456	2L_5395456_SNP [dm3] 2L_5395456_SNP [dm6]	A	G	2.953e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	7409851	2R_7409851_SNP [dm3] 2R_11522346_SNP [dm6]	T	C	2.955e^-4	0.758	INTERGENIC
2L	16100939	2L_16100939_SNP [dm3] 2L_16100939_SNP [dm6]	A	G	2.955e^-4	0.758	INTERGENIC
X	20262315	X_20262315_DEL [dm3] X_20391288_DEL [dm6]	TGATGTTTCTTAT...	T	2.960e^-4	0.758	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19532400	3R_19532400_SNP [dm3] 3R_23706678_SNP [dm6]	G	A	2.960e^-4	0.758	SYNONYMOUS_CODING CG31414 EXON CR44052
3R	25202680	3R_25202680_SNP [dm3] 3R_29376958_SNP [dm6]	A	T	2.962e^-4	0.758	UPSTREAM Ptp99A INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20345617	2R_20345617_SNP [dm3] 2R_24458094_SNP [dm6]	G	T	2.968e^-4	0.758	INTRON CG13579
3L	17119367	3L_17119367_SNP [dm3] 3L_17126267_SNP [dm6]	T	A	2.968e^-4	0.758	INTRON Rbp6
3R	24175536	3R_24175536_INS [dm3] 3R_28349814_INS [dm6]	G	GG	2.969e^-4	0.758	INTERGENIC
X	3164800	X_3164800_INS [dm3] X_3270767_INS [dm6]	T	TT	2.975e^-4	0.758	INTRON dnc
2R	19884798	2R_19884798_SNP [dm3] 2R_23997275_SNP [dm6]	A	G	2.980e^-4	0.758	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18589530	3R_18589530_SNP [dm3] 3R_22763808_SNP [dm6]	A	G	2.983e^-4	0.758	UPSTREAM CG4723 DOWNSTREAM CG4721 INTRON Usp12-46 & 1 other
2L	12688665	2L_12688665_SNP [dm3] 2L_12688665_SNP [dm6]	G	A	2.984e^-4	0.758	INTERGENIC
3L	1645303	3L_1645303_SNP [dm3] 3L_1645303_SNP [dm6]	A	T	2.986e^-4	0.758	UPSTREAM CG13919 & 1 other DOWNSTREAM CG17249 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8736354	3L_8736354_DEL [dm3] 3L_8743254_DEL [dm6]	AA	A	2.988e^-4	0.758	INTRON Prm	TF binding site BDTNP1_TFBS_twi
2L	12042251	2L_12042251_SNP [dm3] 2L_12042251_SNP [dm6]	A	T	2.994e^-4	0.758	INTRON CG6785	TF binding site mE1_TFBS_chinmo
3L	13424257	3L_13424257_SNP [dm3] 3L_13431157_SNP [dm6]	C	T	2.996e^-4	0.758	INTRON CG10713
X	6103021	X_6103021_SNP [dm3] X_6208988_SNP [dm6]	T	C	2.997e^-4	0.758	INTERGENIC
3R	25323545	3R_25323545_SNP [dm3] 3R_29497823_SNP [dm6]	C	G	3.004e^-4	0.758	SYNONYMOUS_CODING CG2010	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	677254	3L_677254_SNP [dm3] 3L_677254_SNP [dm6]	T	A	3.014e^-4	0.758	DOWNSTREAM CG17129 INTERGENIC
X	20262202	X_20262202_SNP [dm3] X_20391175_SNP [dm6]	C	A	3.014e^-4	0.758	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16098974	2L_16098974_DEL [dm3] 2L_16098974_DEL [dm6]	CCAGAGTAACTCATCAAAAC...	C	3.015e^-4	0.758	INTERGENIC
2L	7559420	2L_7559420_SNP [dm3] 2L_7559420_SNP [dm6]	G	A	3.017e^-4	0.758	INTRON RapGAP1
3R	15059154	3R_15059154_SNP [dm3] 3R_19233432_SNP [dm6]	G	A	3.030e^-4	0.758	SYNONYMOUS_CODING unc79
3L	1645310	3L_1645310_SNP [dm3] 3L_1645310_SNP [dm6]	C	T	3.035e^-4	0.758	UPSTREAM CG13919 & 1 other DOWNSTREAM CG17249 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	2865679	3L_2865679_SNP [dm3] 3L_2865679_SNP [dm6]	A	T	3.037e^-4	0.758	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	16547893	X_16547893_SNP [dm3] X_16653860_SNP [dm6]	A	G	3.043e^-4	0.758	NON_SYNONYMOUS_CODING CG9723 DOWNSTREAM CG32573 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5634902	3L_5634902_SNP [dm3] 3L_5641802_SNP [dm6]	C	T	3.045e^-4	0.758	UPSTREAM Blimp-1 INTRON Blimp-1
2L	16082045	2L_16082045_SNP [dm3] 2L_16082045_SNP [dm6]	A	G	3.048e^-4	0.758	DOWNSTREAM beat-Ia INTERGENIC
3R	22587207	3R_22587207_SNP [dm3] 3R_26761485_SNP [dm6]	A	G	3.050e^-4	0.758	INTERGENIC
2L	6398352	2L_6398352_SNP [dm3] 2L_6398352_SNP [dm6]	G	T	3.051e^-4	0.758	INTRON CG42368
3L	3558216	3L_3558216_SNP [dm3] 3L_3558216_SNP [dm6]	T	C	3.055e^-4	0.758	INTRON Eip63E	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sbb
X	9073331	X_9073331_SNP [dm3] X_9179298_SNP [dm6]	T	G	3.057e^-4	0.758	UTR_3_PRIME mei-P26
2R	2945133	2R_2945133_SNP [dm3] 2R_7057628_SNP [dm6]	A	T	3.061e^-4	0.758	UPSTREAM Tsp42Ep DOWNSTREAM pgant3 INTERGENIC
2R	11081127	2R_11081127_SNP [dm3] 2R_15193622_SNP [dm6]	T	C	3.065e^-4	0.758	UPSTREAM Sfp51E DOWNSTREAM CG43829 INTERGENIC
2R	3954596	2R_3954596_SNP [dm3] 2R_8067091_SNP [dm6]	T	A	3.067e^-4	0.758	UPSTREAM lig INTRON CG17977	TF binding site BDTNP1_TFBS_dl
3R	3067718	3R_3067718_SNP [dm3] 3R_7241996_SNP [dm6]	T	C	3.067e^-4	0.758	DOWNSTREAM CG14608 INTRON CG14607
3R	14456654	3R_14456654_SNP [dm3] 3R_18630932_SNP [dm6]	A	C	3.075e^-4	0.758	INTRON qin & 1 other
3L	20855390	3L_20855390_SNP [dm3] 3L_20862290_SNP [dm6]	G	C	3.079e^-4	0.758	INTRON CG32432
2L	6741339	2L_6741339_SNP [dm3] 2L_6741339_SNP [dm6]	C	T	3.084e^-4	0.758	INTERGENIC
2L	8006797	2L_8006797_SNP [dm3] 2L_8006797_SNP [dm6]	C	T	3.087e^-4	0.758	SYNONYMOUS_CODING Spn28Dc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10110706	X_10110706_SNP [dm3] X_10216673_SNP [dm6]	A	G	3.094e^-4	0.758	UTR_3_PRIME l_1_G0230 UPSTREAM CR45629 & 1 other
2R	14562763	2R_14562763_SNP [dm3] 2R_18675258_SNP [dm6]	C	T	3.100e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5366357	2L_5366357_SNP [dm3] 2L_5366357_SNP [dm6]	A	G	3.108e^-4	0.758	DOWNSTREAM nompC INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	4386278	3L_4386278_SNP [dm3] 3L_4386278_SNP [dm6]	T	A	3.108e^-4	0.758	INTRON slow
3L	12213005	3L_12213005_SNP [dm3] 3L_12219905_SNP [dm6]	C	G	3.116e^-4	0.758	INTRON app
2L	5181747	2L_5181747_SNP [dm3] 2L_5181747_SNP [dm6]	C	G	3.117e^-4	0.758	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	1389783	3L_1389783_SNP [dm3] 3L_1389783_SNP [dm6]	T	C	3.122e^-4	0.758	INTRON Ptp61F
2L	21846679	2L_21846679_SNP [dm3] 2L_21846679_SNP [dm6]	A	T	3.127e^-4	0.758	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA
2L	21846758	2L_21846758_SNP [dm3] 2L_21846758_SNP [dm6]	A	C	3.127e^-4	0.758	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	21849933	2L_21849933_SNP [dm3] 2L_21849933_SNP [dm6]	A	G	3.127e^-4	0.758	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
2L	21863301	2L_21863301_SNP [dm3] 2L_21863301_SNP [dm6]	T	A	3.127e^-4	0.758	INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21865942	2L_21865942_SNP [dm3] 2L_21865942_SNP [dm6]	C	T	3.127e^-4	0.758	DOWNSTREAM CR44919 INTRON CR44917 EXON CR44918	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	21880332	2L_21880332_DEL [dm3] 2L_21880332_DEL [dm6]	TATAACCATTTT...	T	3.127e^-4	0.758	INTERGENIC
2L	21881610	2L_21881610_SNP [dm3] 2L_21881610_SNP [dm6]	G	A	3.127e^-4	0.758	INTERGENIC	transposable element FlyBase
2L	21881652	2L_21881652_SNP [dm3] 2L_21881652_SNP [dm6]	C	T	3.127e^-4	0.758	INTERGENIC	transposable element FlyBase
2R	10539913	2R_10539913_SNP [dm3] 2R_14652408_SNP [dm6]	A	C	3.128e^-4	0.758	INTERGENIC
2R	17475466	2R_17475466_SNP [dm3] 2R_21587961_SNP [dm6]	A	T	3.129e^-4	0.758	INTERGENIC
2L	11475247	2L_11475247_SNP [dm3] 2L_11475247_SNP [dm6]	A	T	3.133e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_ttk
3R	4824081	3R_4824081_SNP [dm3] 3R_8998359_SNP [dm6]	G	A	3.146e^-4	0.758	SYNONYMOUS_CODING CG11977 INTRON CG31100
3L	19097593	3L_19097593_SNP [dm3] 3L_19104493_SNP [dm6]	A	G	3.149e^-4	0.758	DOWNSTREAM CG14082 INTERGENIC
2R	4678908	2R_4678908_SNP [dm3] 2R_8791403_SNP [dm6]	G	T	3.155e^-4	0.758	INTERGENIC
2L	7962177	2L_7962177_SNP [dm3] 2L_7962177_SNP [dm6]	G	A	3.155e^-4	0.758	INTRON Snoo
2R	19371075	2R_19371075_SNP [dm3] 2R_23483552_SNP [dm6]	A	T	3.158e^-4	0.758	INTRON CG43795	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6844002	2L_6844002_SNP [dm3] 2L_6844002_SNP [dm6]	A	C	3.159e^-4	0.758	INTERGENIC
2R	17558373	2R_17558373_SNP [dm3] 2R_21670868_SNP [dm6]	G	T	3.161e^-4	0.758	NON_SYNONYMOUS_CODING NC2alpha UPSTREAM CG9865 & 4 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22682225	3R_22682225_SNP [dm3] 3R_26856503_SNP [dm6]	T	C	3.162e^-4	0.758	INTRON Lerp
X	3943308	X_3943308_SNP [dm3] X_4049275_SNP [dm6]	G	A	3.166e^-4	0.758	UPSTREAM CR45482 INTERGENIC
3L	9726892	3L_9726892_SNP [dm3] 3L_9733792_SNP [dm6]	G	A	3.167e^-4	0.758	NON_SYNONYMOUS_CODING CG6749 UPSTREAM mir-4986 DOWNSTREAM CG42268
3L	9726895	3L_9726895_SNP [dm3] 3L_9733795_SNP [dm6]	T	G	3.167e^-4	0.758	NON_SYNONYMOUS_CODING CG6749 UPSTREAM mir-4986 DOWNSTREAM CG42268
3R	14331986	3R_14331986_SNP [dm3] 3R_18506264_SNP [dm6]	C	T	3.170e^-4	0.758	INTRON fru
2R	17017861	2R_17017861_SNP [dm3] 2R_21130356_SNP [dm6]	G	A	3.171e^-4	0.758	DOWNSTREAM mago INTRON Magi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25802805	3R_25802805_DEL [dm3] 3R_29977083_DEL [dm6]	GTGC	G	3.178e^-4	0.758	INTERGENIC
3L	393292	3L_393292_SNP [dm3] 3L_393292_SNP [dm6]	A	G	3.182e^-4	0.758	UPSTREAM CR43969 & 2 others INTERGENIC	TF binding site mE1_TFBS_Trl
3L	10861700	3L_10861700_SNP [dm3] 3L_10868600_SNP [dm6]	A	C	3.199e^-4	0.758	INTRON tna
3L	16895223	3L_16895223_SNP [dm3] 3L_16902123_SNP [dm6]	T	C	3.204e^-4	0.758	SPLICE_SITE_REGION Lmpt INTRON Lmpt	TF binding site mE1_TFBS_inv
2R	11530595	2R_11530595_SNP [dm3] 2R_15643090_SNP [dm6]	T	A	3.208e^-4	0.758	INTRON CG42524
2L	21856035	2L_21856035_SNP [dm3] 2L_21856035_SNP [dm6]	C	A	3.213e^-4	0.758	INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	21879633	2L_21879633_SNP [dm3] 2L_21879633_SNP [dm6]	T	C	3.213e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	13069066	3L_13069066_SNP [dm3] 3L_13075966_SNP [dm6]	A	T	3.215e^-4	0.758	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da
X	13513402	X_13513402_SNP [dm3] X_13619369_SNP [dm6]	G	A	3.218e^-4	0.758	UTR_3_PRIME CG2691 DOWNSTREAM Tango2
X	901394	X_901394_SNP [dm3] X_1007361_SNP [dm6]	A	T	3.218e^-4	0.758	INTERGENIC
2R	15225753	2R_15225753_SNP [dm3] 2R_19338248_SNP [dm6]	C	T	3.223e^-4	0.758	INTRON Rgk1
3L	355515	3L_355515_SNP [dm3] 3L_355515_SNP [dm6]	C	T	3.229e^-4	0.758	SYNONYMOUS_CODING Ptpmeg UPSTREAM CG1231
2L	6350877	2L_6350877_SNP [dm3] 2L_6350877_SNP [dm6]	A	G	3.238e^-4	0.758	SYNONYMOUS_CODING CG9498
3R	10573381	3R_10573381_SNP [dm3] 3R_14747659_SNP [dm6]	T	A	3.245e^-4	0.758	UPSTREAM smp-30 INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
3L	9823858	3L_9823858_SNP [dm3] 3L_9830758_SNP [dm6]	C	T	3.257e^-4	0.758	SYNONYMOUS_CODING CG43897	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14378049	3R_14378049_SNP [dm3] 3R_18552327_SNP [dm6]	C	T	3.260e^-4	0.758	INTERGENIC
2R	16965137	2R_16965137_SNP [dm3] 2R_21077632_SNP [dm6]	C	T	3.261e^-4	0.758	INTRON Treh
X	15330458	X_15330458_SNP [dm3] X_15436425_SNP [dm6]	T	G	3.261e^-4	0.758	INTRON Cngl
2L	3167039	2L_3167039_SNP [dm3] 2L_3167039_SNP [dm6]	G	A	3.267e^-4	0.758	SYNONYMOUS_CODING Hydr2 UTR_5_PRIME Hydr2
3R	24994238	3R_24994238_SNP [dm3] 3R_29168516_SNP [dm6]	G	A	3.268e^-4	0.758	INTRON CG11898
2L	6381501	2L_6381501_SNP [dm3] 2L_6381501_SNP [dm6]	G	A	3.274e^-4	0.758	SYNONYMOUS_CODING CG9507 INTRON CG42368	TF binding site mE1_TFBS_chinmo
2R	16152243	2R_16152243_SNP [dm3] 2R_20264738_SNP [dm6]	C	T	3.280e^-4	0.758	SYNONYMOUS_CODING RpS18 UPSTREAM CG8908 DOWNSTREAM CR43812	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	12026109	3L_12026109_SNP [dm3] 3L_12033009_SNP [dm6]	C	A	3.281e^-4	0.758	DOWNSTREAM CG43993 INTRON rols
3L	19311551	3L_19311551_SNP [dm3] 3L_19318451_SNP [dm6]	A	G	3.285e^-4	0.758	INTRON pip	TF binding site mE1_TFBS_cad
3R	24718588	3R_24718588_SNP [dm3] 3R_28892866_SNP [dm6]	T	G	3.289e^-4	0.758	INTRON Doa
3L	10699766	3L_10699766_DEL [dm3] 3L_10706666_DEL [dm6]	AAATCTAAAAATATTAAACC...	A	3.290e^-4	0.758	INTERGENIC
3L	10699790	3L_10699790_DEL [dm3] 3L_10706690_DEL [dm6]	GAAAAC	G	3.290e^-4	0.758	INTERGENIC
2R	17920198	2R_17920198_SNP [dm3] 2R_22032693_SNP [dm6]	T	G	3.302e^-4	0.758	INTRON CG34370
2L	16101855	2L_16101855_SNP [dm3] 2L_16101855_SNP [dm6]	G	T	3.302e^-4	0.758	INTERGENIC
3R	3258210	3R_3258210_SNP [dm3] 3R_7432488_SNP [dm6]	G	C	3.305e^-4	0.758	INTERGENIC
3R	19625641	3R_19625641_SNP [dm3] 3R_23799919_SNP [dm6]	G	A	3.305e^-4	0.758	SYNONYMOUS_CODING mbc
3L	5138129	3L_5138129_SNP [dm3] 3L_5145029_SNP [dm6]	C	T	3.311e^-4	0.758	SYNONYMOUS_CODING CG10671 DOWNSTREAM CG4623	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_sens
2R	15922503	2R_15922503_SNP [dm3] 2R_20034998_SNP [dm6]	T	C	3.316e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	21868401	2L_21868401_SNP [dm3] 2L_21868401_SNP [dm6]	T	G	3.316e^-4	0.758	UPSTREAM CR44919 DOWNSTREAM CR44917 INTRON CR44917	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	18646774	3R_18646774_SNP [dm3] 3R_22821052_SNP [dm6]	C	T	3.319e^-4	0.758	INTERGENIC
3R	7339379	3R_7339379_SNP [dm3] 3R_11513657_SNP [dm6]	C	T	3.320e^-4	0.758	INTERGENIC
X	21307343	X_21307343_SNP [dm3] X_21436316_SNP [dm6]	C	A	3.322e^-4	0.758	INTRON CG42343	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	7146781	2R_7146781_SNP [dm3] 2R_11259276_SNP [dm6]	T	C	3.334e^-4	0.758	UTR_3_PRIME Cpr47Ec DOWNSTREAM CG13223
2R	15394537	2R_15394537_SNP [dm3] 2R_19507032_SNP [dm6]	G	C	3.337e^-4	0.758	UPSTREAM tRNA:H:56E INTERGENIC
2L	5181625	2L_5181625_SNP [dm3] 2L_5181625_SNP [dm6]	C	T	3.338e^-4	0.758	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_HSA
X	20409693	X_20409693_SNP [dm3] X_20538666_SNP [dm6]	G	A	3.340e^-4	0.758	INTRON RunxB
2R	19087664	2R_19087664_SNP [dm3] 2R_23200141_SNP [dm6]	T	A	3.346e^-4	0.758	INTRON CG34371
3L	16724386	3L_16724386_DEL [dm3] 3L_16731286_DEL [dm6]	TAACAATATT	T	3.346e^-4	0.758	UPSTREAM Dbp73D INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	10209245	X_10209245_SNP [dm3] X_10315212_SNP [dm6]	T	C	3.349e^-4	0.758	INTRON alpha-Man-I
2L	21901011	2L_21901011_SNP [dm3] 2L_21901011_SNP [dm6]	A	T	3.352e^-4	0.758	INTERGENIC
2R	7146853	2R_7146853_SNP [dm3] 2R_11259348_SNP [dm6]	A	G	3.363e^-4	0.758	NON_SYNONYMOUS_CODING Cpr47Ec DOWNSTREAM CG13223
X	2400011	X_2400011_SNP [dm3] X_2505978_SNP [dm6]	C	T	3.366e^-4	0.758	UPSTREAM trol INTRON trol
2L	18664536	2L_18664536_SNP [dm3] 2L_18664536_SNP [dm6]	T	G	3.366e^-4	0.758	UPSTREAM CR42490 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	19776757	3R_19776757_SNP [dm3] 3R_23951035_SNP [dm6]	A	G	3.368e^-4	0.758	INTERGENIC
3L	7426487	3L_7426487_DEL [dm3] 3L_7433387_DEL [dm6]	AA	A	3.369e^-4	0.758	DOWNSTREAM Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	21916487	2L_21916487_SNP [dm3] 2L_21916487_SNP [dm6]	T	A	3.379e^-4	0.758	NON_SYNONYMOUS_CODING CG11634
3L	1646170	3L_1646170_SNP [dm3] 3L_1646170_SNP [dm6]	G	A	3.381e^-4	0.758	SYNONYMOUS_CODING CG17249 UPSTREAM alphaCOP DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15388746	3R_15388746_SNP [dm3] 3R_19563024_SNP [dm6]	T	A	3.388e^-4	0.758	INTRON Dys
2L	16102053	2L_16102053_SNP [dm3] 2L_16102053_SNP [dm6]	G	C	3.394e^-4	0.758	INTERGENIC
2L	12807890	2L_12807890_SNP [dm3] 2L_12807890_SNP [dm6]	T	A	3.396e^-4	0.758	EXON CR43818
3L	18785353	3L_18785353_SNP [dm3] 3L_18792253_SNP [dm6]	T	A	3.396e^-4	0.758	INTRON ftz-f1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_zfh1
2L	21872809	2L_21872809_SNP [dm3] 2L_21872809_SNP [dm6]	G	T	3.397e^-4	0.758	INTERGENIC	transposable element FlyBase
X	8286891	X_8286891_SNP [dm3] X_8392858_SNP [dm6]	C	T	3.400e^-4	0.758	INTERGENIC
2R	8167458	2R_8167458_SNP [dm3] 2R_12279953_SNP [dm6]	C	T	3.420e^-4	0.758	UTR_5_PRIME CG42700	TF binding site mE1_TFBS_chinmo
X	7890436	X_7890436_SNP [dm3] X_7996403_SNP [dm6]	G	T	3.430e^-4	0.758	INTRON Tbh
3L	13426412	3L_13426412_SNP [dm3] 3L_13433312_SNP [dm6]	C	T	3.437e^-4	0.758	DOWNSTREAM tRNA:V4:70BCa & 1 other INTRON CG10713
X	15330448	X_15330448_SNP [dm3] X_15436415_SNP [dm6]	G	A	3.437e^-4	0.758	INTRON Cngl
3R	2499527	3R_2499527_SNP [dm3] 3R_6673805_SNP [dm6]	T	A	3.443e^-4	0.758	INTRON lab	regulatory region FlyBase REDfly_CRMs
3R	15340722	3R_15340722_SNP [dm3] 3R_19515000_SNP [dm6]	G	C	3.454e^-4	0.758	INTRON Dys
2L	21794866	2L_21794866_SNP [dm3] 2L_21794866_SNP [dm6]	C	T	3.454e^-4	0.758	INTRON CG31612	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
2L	4435010	2L_4435010_SNP [dm3] 2L_4435010_SNP [dm6]	C	A	3.457e^-4	0.758	UTR_3_PRIME CG34177 & 1 other INTRON CG15431
3R	8068491	3R_8068491_SNP [dm3] 3R_12242769_SNP [dm6]	C	T	3.459e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25103105	3R_25103105_SNP [dm3] 3R_29277383_SNP [dm6]	A	G	3.460e^-4	0.758	UPSTREAM CR45568 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2L	7013674	2L_7013674_SNP [dm3] 2L_7013674_SNP [dm6]	G	A	3.467e^-4	0.758	NON_SYNONYMOUS_CODING CG43322 DOWNSTREAM CG43321 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_Ubx
2L	7013682	2L_7013682_SNP [dm3] 2L_7013682_SNP [dm6]	A	G	3.467e^-4	0.758	SYNONYMOUS_CODING CG43322 DOWNSTREAM CG43321 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	10497368	3L_10497368_SNP [dm3] 3L_10504268_SNP [dm6]	C	T	3.472e^-4	0.758	INTRON A2bp1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11610198	2R_11610198_SNP [dm3] 2R_15722693_SNP [dm6]	A	G	3.473e^-4	0.758	INTERGENIC
2L	14900856	2L_14900856_SNP [dm3] 2L_14900856_SNP [dm6]	A	C	3.477e^-4	0.758	INTERGENIC
3L	8915142	3L_8915142_SNP [dm3] 3L_8922042_SNP [dm6]	A	G	3.483e^-4	0.758	INTRON Tsp66E
2L	9573703	2L_9573703_INS [dm3] 2L_9573703_INS [dm6]	T	TGTCCCT	3.485e^-4	0.758	UTR_3_PRIME Mtpalpha DOWNSTREAM CG3838
2L	10494856	2L_10494856_DEL [dm3] 2L_10494856_DEL [dm6]	TAAC	T	3.487e^-4	0.758	INTRON Myo31DF
3R	15390897	3R_15390897_SNP [dm3] 3R_19565175_SNP [dm6]	A	C	3.495e^-4	0.758	INTRON Dys
2L	6101005	2L_6101005_SNP [dm3] 2L_6101005_SNP [dm6]	A	G	3.502e^-4	0.758	INTRON stai	TF binding site BDTNP1_TFBS_dl
2R	11530566	2R_11530566_SNP [dm3] 2R_15643061_SNP [dm6]	T	C	3.502e^-4	0.758	INTRON CG42524
2R	11610037	2R_11610037_SNP [dm3] 2R_15722532_SNP [dm6]	C	A	3.505e^-4	0.758	INTERGENIC
2R	16965931	2R_16965931_SNP [dm3] 2R_21078426_SNP [dm6]	G	A	3.514e^-4	0.758	INTRON Treh
3L	17168874	3L_17168874_SNP [dm3] 3L_17175774_SNP [dm6]	T	A	3.522e^-4	0.758	INTRON Rbp6
2R	16361205	2R_16361205_SNP [dm3] 2R_20473700_SNP [dm6]	T	G	3.527e^-4	0.758	INTRON CG12484
3L	4120278	3L_4120278_SNP [dm3] 3L_4120278_SNP [dm6]	T	C	3.529e^-4	0.758	INTRON Chd64	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
2R	13204786	2R_13204786_SNP [dm3] 2R_17317281_SNP [dm6]	T	C	3.532e^-4	0.758	INTRON mbl
3L	9880357	3L_9880357_SNP [dm3] 3L_9887257_SNP [dm6]	G	C	3.537e^-4	0.758	SYNONYMOUS_CODING Taf2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18287447	2R_18287447_SNP [dm3] 2R_22399942_SNP [dm6]	C	A	3.538e^-4	0.758	INTRON babos	TF binding site BDTNP1_TFBS_dl
X	3528132	X_3528132_SNP [dm3] X_3634099_SNP [dm6]	T	G	3.540e^-4	0.758	INTRON AstA-R1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7109963	2R_7109963_DEL [dm3] 2R_11222458_DEL [dm6]	AA	A	3.542e^-4	0.758	UTR_3_PRIME Syx6 UPSTREAM CG7737 DOWNSTREAM Syx6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	21785125	2L_21785125_SNP [dm3] 2L_21785125_SNP [dm6]	C	T	3.556e^-4	0.758	INTRON CG31612
3R	25317005	3R_25317005_MNP [dm3] 3R_29491283_MNP [dm6]	TTTA	GCAT	3.558e^-4	0.758	UTR_3_PRIME CG2006 UPSTREAM Spase12 DOWNSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	4089697	3L_4089697_SNP [dm3] 3L_4089697_SNP [dm6]	A	T	3.561e^-4	0.758	UPSTREAM Gad1 INTRON CG14989
3L	8522276	3L_8522276_SNP [dm3] 3L_8529176_SNP [dm6]	G	A	3.563e^-4	0.758	INTRON foi
2L	6970422	2L_6970422_SNP [dm3] 2L_6970422_SNP [dm6]	A	G	3.572e^-4	0.758	SYNONYMOUS_CODING snRNP-U1-70K	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10502632	3L_10502632_SNP [dm3] 3L_10509532_SNP [dm6]	A	C	3.580e^-4	0.758	INTRON A2bp1
X	17124880	X_17124880_SNP [dm3] X_17230847_SNP [dm6]	G	A	3.599e^-4	0.758	SYNONYMOUS_CODING CG10597	TF binding site mE1_TFBS_chinmo
3L	2939635	3L_2939635_SNP [dm3] 3L_2939635_SNP [dm6]	A	T	3.607e^-4	0.758	INTRON Shab
2L	3472133	2L_3472133_SNP [dm3] 2L_3472133_SNP [dm6]	C	T	3.609e^-4	0.758	SYNONYMOUS_CODING CG31776 UPSTREAM pgant4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	16143470	3R_16143470_DEL [dm3] 3R_20317748_DEL [dm6]	AAC	A	3.611e^-4	0.758	UPSTREAM CG42668 INTRON CG42668
2R	7410449	2R_7410449_SNP [dm3] 2R_11522944_SNP [dm6]	A	G	3.615e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	12272541	2L_12272541_SNP [dm3] 2L_12272541_SNP [dm6]	G	A	3.620e^-4	0.758	INTRON aret
X	20262200	X_20262200_SNP [dm3] X_20391173_SNP [dm6]	G	A	3.626e^-4	0.758	UPSTREAM l_1_G0004 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14368836	3L_14368836_SNP [dm3] 3L_14375736_SNP [dm6]	A	C	3.627e^-4	0.758	INTERGENIC	TF binding site mE1_TFBS_cad
2L	13610291	2L_13610291_SNP [dm3] 2L_13610291_SNP [dm6]	C	T	3.630e^-4	0.758	NON_SYNONYMOUS_CODING kuz DOWNSTREAM mir-2489
3L	7247725	3L_7247725_SNP [dm3] 3L_7254625_SNP [dm6]	T	C	3.632e^-4	0.758	INTRON CG14830
3R	10984800	3R_10984800_SNP [dm3] 3R_15159078_SNP [dm6]	C	T	3.635e^-4	0.758	INTRON Gyc88E
3L	1357446	3L_1357446_SNP [dm3] 3L_1357446_SNP [dm6]	T	A	3.636e^-4	0.758	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	19995037	2R_19995037_DEL [dm3] 2R_24107514_DEL [dm6]	AA	A	3.642e^-4	0.758	UTR_3_PRIME CG4049 DOWNSTREAM enok
2L	8533896	2L_8533896_DEL [dm3] 2L_8533896_DEL [dm6]	TGCTACGAAT	T	3.646e^-4	0.758	INTRON CG17834	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
2R	19748696	2R_19748696_SNP [dm3] 2R_23861173_SNP [dm6]	G	C	3.656e^-4	0.758	INTRON TBPH	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	2895529	2L_2895529_SNP [dm3] 2L_2895529_SNP [dm6]	A	T	3.664e^-4	0.758	INTRON lilli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22739488	3R_22739488_SNP [dm3] 3R_26913766_SNP [dm6]	A	G	3.665e^-4	0.758	UPSTREAM Ets97D INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6100997	2L_6100997_SNP [dm3] 2L_6100997_SNP [dm6]	A	T	3.666e^-4	0.758	INTRON stai	TF binding site BDTNP1_TFBS_dl
3L	4089622	3L_4089622_SNP [dm3] 3L_4089622_SNP [dm6]	G	A	3.673e^-4	0.758	UPSTREAM Gad1 INTRON CG14989
3L	10502065	3L_10502065_INS [dm3] 3L_10508965_INS [dm6]	C	CT	3.675e^-4	0.758	INTRON A2bp1
2R	14978893	2R_14978893_SNP [dm3] 2R_19091388_SNP [dm6]	C	T	3.678e^-4	0.758	SYNONYMOUS_CODING 5-HT1A
X	6748019	X_6748019_SNP [dm3] X_6853986_SNP [dm6]	A	T	3.678e^-4	0.758	INTRON CG14434	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3R	26963749	3R_26963749_SNP [dm3] 3R_31138027_SNP [dm6]	T	C	3.681e^-4	0.758	INTRON Gycbeta100B
3L	11148657	3L_11148657_SNP [dm3] 3L_11155557_SNP [dm6]	T	A	3.687e^-4	0.758	INTRON CG32082
3R	16988888	3R_16988888_SNP [dm3] 3R_21163166_SNP [dm6]	G	T	3.692e^-4	0.758	UPSTREAM CG5810 INTRON SNF4Agamma
2L	5181735	2L_5181735_SNP [dm3] 2L_5181735_SNP [dm6]	A	G	3.694e^-4	0.758	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	21966446	3L_21966446_SNP [dm3] 3L_21973346_SNP [dm6]	A	C	3.695e^-4	0.758	INTRON CG7470
2R	11657102	2R_11657102_SNP [dm3] 2R_15769597_SNP [dm6]	C	G	3.696e^-4	0.758	INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16119437	2L_16119437_INS [dm3] 2L_16119437_INS [dm6]	T	TT	3.697e^-4	0.758	INTERGENIC
2L	7963140	2L_7963140_SNP [dm3] 2L_7963140_SNP [dm6]	A	G	3.700e^-4	0.758	INTRON Snoo
X	9338920	X_9338920_SNP [dm3] X_9444887_SNP [dm6]	T	G	3.704e^-4	0.758	DOWNSTREAM CG44815 INTRON mgl
3L	13712878	3L_13712878_SNP [dm3] 3L_13719778_SNP [dm6]	C	T	3.705e^-4	0.758	INTRON bru-3
3R	14761420	3R_14761420_SNP [dm3] 3R_18935698_SNP [dm6]	G	A	3.706e^-4	0.758	INTRON CG42613
2R	16152207	2R_16152207_SNP [dm3] 2R_20264702_SNP [dm6]	C	T	3.706e^-4	0.758	SYNONYMOUS_CODING RpS18 UPSTREAM CG8908 DOWNSTREAM CR43812	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	8915136	3L_8915136_SNP [dm3] 3L_8922036_SNP [dm6]	T	G	3.727e^-4	0.758	INTRON Tsp66E
2R	20196107	2R_20196107_SNP [dm3] 2R_24308584_SNP [dm6]	T	A	3.728e^-4	0.758	INTRON betaTub60D	regulatory region REDfly_CRMs
3R	19479652	3R_19479652_SNP [dm3] 3R_23653930_SNP [dm6]	A	G	3.730e^-4	0.758	INTRON CG31145
X	19791614	X_19791614_SNP [dm3] X_19897581_SNP [dm6]	C	G	3.732e^-4	0.758	INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3L	2428522	3L_2428522_SNP [dm3] 3L_2428522_SNP [dm6]	A	G	3.737e^-4	0.758	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	796590	3L_796590_SNP [dm3] 3L_796590_SNP [dm6]	A	G	3.739e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	25317012	3R_25317012_SNP [dm3] 3R_29491290_SNP [dm6]	T	A	3.742e^-4	0.758	UTR_3_PRIME CG2006 UPSTREAM Spase12 DOWNSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	9726894	3L_9726894_SNP [dm3] 3L_9733794_SNP [dm6]	C	T	3.750e^-4	0.758	SYNONYMOUS_CODING CG6749 UPSTREAM mir-4986 DOWNSTREAM CG42268
2L	21913132	2L_21913132_SNP [dm3] 2L_21913132_SNP [dm6]	G	A	3.756e^-4	0.758	INTERGENIC	transposable element FlyBase
X	3528234	X_3528234_SNP [dm3] X_3634201_SNP [dm6]	G	A	3.761e^-4	0.758	INTRON AstA-R1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26047863	3R_26047863_SNP [dm3] 3R_30222141_SNP [dm6]	A	G	3.762e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3559043	3L_3559043_SNP [dm3] 3L_3559043_SNP [dm6]	A	T	3.763e^-4	0.758	INTRON Eip63E
3R	19458939	3R_19458939_SNP [dm3] 3R_23633217_SNP [dm6]	A	C	3.767e^-4	0.758	INTRON CG31145	TF binding site BDTNP1_TFBS_twi
3R	14895249	3R_14895249_DEL [dm3] 3R_19069527_DEL [dm6]	CCGTTCC	C	3.775e^-4	0.758	INTRON cdi
3L	9718027	3L_9718027_SNP [dm3] 3L_9724927_SNP [dm6]	G	A	3.776e^-4	0.758	SYNONYMOUS_CODING defl	TF binding site mE1_TFBS_cad
3L	2865677	3L_2865677_SNP [dm3] 3L_2865677_SNP [dm6]	A	G	3.778e^-4	0.758	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	8075623	2L_8075623_SNP [dm3] 2L_8075623_SNP [dm6]	T	C	3.793e^-4	0.758	INTRON Mcr
3L	9739617	3L_9739617_SNP [dm3] 3L_9746517_SNP [dm6]	T	C	3.794e^-4	0.758	INTRON CG42268
2L	14795346	2L_14795346_SNP [dm3] 2L_14795346_SNP [dm6]	G	A	3.794e^-4	0.758	UTR_3_PRIME CG18420
3L	2181601	3L_2181601_SNP [dm3] 3L_2181601_SNP [dm6]	G	A	3.805e^-4	0.758	INTERGENIC
3R	15818132	3R_15818132_SNP [dm3] 3R_19992410_SNP [dm6]	C	T	3.811e^-4	0.758	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
2R	15394540	2R_15394540_SNP [dm3] 2R_19507035_SNP [dm6]	G	T	3.816e^-4	0.758	UPSTREAM tRNA:H:56E INTERGENIC
3R	15194003	3R_15194003_DEL [dm3] 3R_19368281_DEL [dm6]	CC	T	3.828e^-4	0.758	DOWNSTREAM Ino80 INTERGENIC
3L	5598953	3L_5598953_SNP [dm3] 3L_5605853_SNP [dm6]	A	C	3.830e^-4	0.758	NON_SYNONYMOUS_CODING mthl2	TF binding site mE1_TFBS_sens
3L	10699799	3L_10699799_DEL [dm3] 3L_10706699_DEL [dm6]	AAATTTACATTCTGTA...	A	3.832e^-4	0.758	INTERGENIC
3L	338477	3L_338477_SNP [dm3] 3L_338477_SNP [dm6]	A	C	3.834e^-4	0.758	INTRON Ptpmeg & 1 other	TF binding site BDTNP1_TFBS_prd
3L	338680	3L_338680_SNP [dm3] 3L_338680_SNP [dm6]	C	T	3.844e^-4	0.758	START_GAINED mthl10 UTR_5_PRIME mthl10 INTRON Ptpmeg & 1 other	TF binding site BDTNP1_TFBS_prd
3R	27127972	3R_27127972_SNP [dm3] 3R_31302250_SNP [dm6]	T	A	3.847e^-4	0.758	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_inv
3L	15306780	3L_15306780_SNP [dm3] 3L_15313680_SNP [dm6]	C	T	3.848e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3919883	3R_3919883_SNP [dm3] 3R_8094161_SNP [dm6]	C	T	3.855e^-4	0.758	SYNONYMOUS_CODING CG7900	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	6101026	2L_6101026_SNP [dm3] 2L_6101026_SNP [dm6]	A	C	3.857e^-4	0.758	INTRON stai	TF binding site BDTNP1_TFBS_dl
3R	12258005	3R_12258005_SNP [dm3] 3R_16432283_SNP [dm6]	G	C	3.858e^-4	0.758	NON_SYNONYMOUS_CODING CG31279 UTR_5_PRIME CG31279 UPSTREAM CG17565 DOWNSTREAM tRNA:CR31282	TF binding site BDTNP1_TFBS_dl
3R	26050371	3R_26050371_SNP [dm3] 3R_30224649_SNP [dm6]	G	A	3.858e^-4	0.758	INTERGENIC
3R	14739044	3R_14739044_DEL [dm3] 3R_18913322_DEL [dm6]	TGTAC	A	3.861e^-4	0.758	UPSTREAM CG14291 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
2L	12993775	2L_12993775_SNP [dm3] 2L_12993775_SNP [dm6]	C	T	3.864e^-4	0.758	UTR_3_PRIME CG12404
X	6742649	X_6742649_SNP [dm3] X_6848616_SNP [dm6]	G	A	3.885e^-4	0.758	SYNONYMOUS_CODING Cht11 DOWNSTREAM CG4557	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4386496	3L_4386496_SNP [dm3] 3L_4386496_SNP [dm6]	G	A	3.890e^-4	0.758	INTRON slow
3L	9564440	3L_9564440_DEL [dm3] 3L_9571340_DEL [dm6]	CAAAATGAAA	G	3.897e^-4	0.758	INTRON CG42673
2R	15884106	2R_15884106_SNP [dm3] 2R_19996601_SNP [dm6]	G	C	3.897e^-4	0.758	INTERGENIC
2L	21785894	2L_21785894_SNP [dm3] 2L_21785894_SNP [dm6]	G	C	3.898e^-4	0.758	INTRON CG31612
X	5408137	X_5408137_DEL [dm3] X_5514104_DEL [dm6]	CTGAATTCAGCGAAGAGC...	C	3.906e^-4	0.758	INTERGENIC
X	198663	X_198663_SNP [dm3] X_304630_SNP [dm6]	C	T	3.910e^-4	0.758	INTRON CG3777	TF binding site BDTNP1_TFBS_twi
2L	15766383	2L_15766383_SNP [dm3] 2L_15766383_SNP [dm6]	T	C	3.912e^-4	0.758	UTR_3_PRIME wek DOWNSTREAM wek & 1 other	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA
2R	19982337	2R_19982337_SNP [dm3] 2R_24094814_SNP [dm6]	T	C	3.921e^-4	0.758	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4846403	3L_4846403_SNP [dm3] 3L_4846403_SNP [dm6]	G	T	3.926e^-4	0.758	INTERGENIC
3L	9739614	3L_9739614_SNP [dm3] 3L_9746514_SNP [dm6]	A	C	3.927e^-4	0.758	INTRON CG42268
2R	10332101	2R_10332101_SNP [dm3] 2R_14444596_SNP [dm6]	G	C	3.933e^-4	0.758	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14339544	3R_14339544_SNP [dm3] 3R_18513822_SNP [dm6]	T	C	3.944e^-4	0.758	UTR_5_PRIME fru INTRON fru
3L	12500416	3L_12500416_SNP [dm3] 3L_12507316_SNP [dm6]	T	G	3.949e^-4	0.758	NON_SYNONYMOUS_CODING CG10654 DOWNSTREAM sti	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4759708	3L_4759708_SNP [dm3] 3L_4759708_SNP [dm6]	G	A	3.956e^-4	0.758	DOWNSTREAM CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10471731	2L_10471731_SNP [dm3] 2L_10471731_SNP [dm6]	C	T	3.957e^-4	0.758	SYNONYMOUS_CODING RluA-1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1108132	3L_1108132_SNP [dm3] 3L_1108132_SNP [dm6]	G	T	3.961e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	21780835	2L_21780835_SNP [dm3] 2L_21780835_SNP [dm6]	A	T	3.964e^-4	0.758	INTRON CG31612	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15392975	3R_15392975_SNP [dm3] 3R_19567253_SNP [dm6]	T	C	3.970e^-4	0.758	INTRON Dys
3L	1692312	3L_1692312_SNP [dm3] 3L_1692312_SNP [dm6]	C	G	3.974e^-4	0.758	INTRON CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	21786168	2L_21786168_DEL [dm3] 2L_21786168_DEL [dm6]	TGTTTTGATTTTTGTACTAT...	T	3.976e^-4	0.758	INTRON CG31612
3R	8044845	3R_8044845_SNP [dm3] 3R_12219123_SNP [dm6]	A	G	3.976e^-4	0.758	SYNONYMOUS_CODING CG4848 DOWNSTREAM CG4860	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1692316	3L_1692316_SNP [dm3] 3L_1692316_SNP [dm6]	A	C	3.977e^-4	0.758	INTRON CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1825035	3L_1825035_SNP [dm3] 3L_1825035_SNP [dm6]	G	C	3.979e^-4	0.758	INTRON Cpr62Ba
2L	4671181	2L_4671181_SNP [dm3] 2L_4671181_SNP [dm6]	A	T	3.979e^-4	0.758	INTERGENIC
3R	20119434	3R_20119434_SNP [dm3] 3R_24293712_SNP [dm6]	C	T	3.982e^-4	0.758	SYNONYMOUS_CODING CG5715 DOWNSTREAM CG6364	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6742647	X_6742647_SNP [dm3] X_6848614_SNP [dm6]	T	C	3.987e^-4	0.758	SYNONYMOUS_CODING Cht11 DOWNSTREAM CG4557	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2172172	3L_2172172_SNP [dm3] 3L_2172172_SNP [dm6]	G	A	3.990e^-4	0.758	SPLICE_SITE_REGION CR15821 DOWNSTREAM CG15820 INTRON CR15821
X	1072852	X_1072852_SNP [dm3] X_1178819_SNP [dm6]	G	T	3.991e^-4	0.758	INTERGENIC
3L	4118865	3L_4118865_SNP [dm3] 3L_4118865_SNP [dm6]	T	C	3.995e^-4	0.758	INTRON Chd64
3L	1532900	3L_1532900_SNP [dm3] 3L_1532900_SNP [dm6]	T	C	4.006e^-4	0.758	INTRON CG12090	TF binding site mE1_TFBS_cad
3L	9967335	3L_9967335_SNP [dm3] 3L_9974235_SNP [dm6]	T	G	4.008e^-4	0.758	UPSTREAM dpr6 DOWNSTREAM vnc & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
3L	16724467	3L_16724467_SNP [dm3] 3L_16731367_SNP [dm6]	G	A	4.018e^-4	0.758	UPSTREAM Dbp73D INTERGENIC	TF binding site mE1_TFBS_HSA
2L	3878827	2L_3878827_SNP [dm3] 2L_3878827_SNP [dm6]	T	A	4.020e^-4	0.758	INTRON capu
3L	9948308	3L_9948308_SNP [dm3] 3L_9955208_SNP [dm6]	G	T	4.021e^-4	0.758	INTRON CG34356
2R	19827402	2R_19827402_SNP [dm3] 2R_23939879_SNP [dm6]	T	C	4.025e^-4	0.758	UPSTREAM Tal & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	20606719	3R_20606719_SNP [dm3] 3R_24780997_SNP [dm6]	G	C	4.025e^-4	0.758	SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	13803068	2R_13803068_SNP [dm3] 2R_17915563_SNP [dm6]	G	A	4.030e^-4	0.758	INTRON Elk
2L	12040257	2L_12040257_SNP [dm3] 2L_12040257_SNP [dm6]	T	C	4.038e^-4	0.758	SPLICE_SITE_REGION CG6766 DOWNSTREAM CG6785 INTRON CG6766	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1057470	2L_1057470_MNP [dm3] 2L_1057470_MNP [dm6]	GTAGT	TATTG	4.045e^-4	0.758	INTRON S	TF binding site mE1_TFBS_sens
3L	3559049	3L_3559049_SNP [dm3] 3L_3559049_SNP [dm6]	C	T	4.046e^-4	0.758	INTRON Eip63E
3L	3384829	3L_3384829_SNP [dm3] 3L_3384829_SNP [dm6]	G	A	4.047e^-4	0.758	INTERGENIC
3R	18588609	3R_18588609_SNP [dm3] 3R_22762887_SNP [dm6]	C	A	4.055e^-4	0.758	NON_SYNONYMOUS_CODING CG4723 INTRON Usp12-46 & 1 other
3L	20595131	3L_20595131_SNP [dm3] 3L_20602031_SNP [dm6]	T	C	4.058e^-4	0.758	INTRON knrl
X	4227612	X_4227612_SNP [dm3] X_4333579_SNP [dm6]	C	T	4.060e^-4	0.758	INTRON norpA
2R	17558297	2R_17558297_SNP [dm3] 2R_21670792_SNP [dm6]	A	T	4.062e^-4	0.758	NON_SYNONYMOUS_CODING NC2alpha UPSTREAM CG9865 & 4 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10861710	3L_10861710_SNP [dm3] 3L_10868610_SNP [dm6]	G	C	4.071e^-4	0.758	INTRON tna
X	12021512	X_12021512_SNP [dm3] X_12127479_SNP [dm6]	A	T	4.073e^-4	0.758	UPSTREAM Ten-a INTRON Ten-a
X	3154188	X_3154188_SNP [dm3] X_3260155_SNP [dm6]	C	T	4.076e^-4	0.758	INTRON dnc
2L	21819052	2L_21819052_SNP [dm3] 2L_21819052_SNP [dm6]	C	T	4.081e^-4	0.758	UPSTREAM CR44786 INTERGENIC
2R	17577554	2R_17577554_SNP [dm3] 2R_21690049_SNP [dm6]	G	C	4.087e^-4	0.758	NON_SYNONYMOUS_CODING CG10307 DOWNSTREAM Tim10 & 1 other	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	8175069	2R_8175069_SNP [dm3] 2R_12287564_SNP [dm6]	C	T	4.090e^-4	0.758	INTRON CG42700
2R	11080952	2R_11080952_SNP [dm3] 2R_15193447_SNP [dm6]	A	T	4.094e^-4	0.758	UPSTREAM Sfp51E DOWNSTREAM CG43829 INTERGENIC
3R	21675880	3R_21675880_SNP [dm3] 3R_25850158_SNP [dm6]	A	G	4.095e^-4	0.758	DOWNSTREAM CG14545 INTERGENIC
X	5555964	X_5555964_SNP [dm3] X_5661931_SNP [dm6]	G	T	4.096e^-4	0.758	NON_SYNONYMOUS_CODING CG42265	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	20856850	3L_20856850_SNP [dm3] 3L_20863750_SNP [dm6]	C	T	4.105e^-4	0.758	INTRON CG32432
2L	5263998	2L_5263998_SNP [dm3] 2L_5263998_SNP [dm6]	C	T	4.105e^-4	0.758	UPSTREAM Cyp4ac1 INTRON tkv
3L	1487948	3L_1487948_SNP [dm3] 3L_1487948_SNP [dm6]	A	G	4.106e^-4	0.758	UPSTREAM CR43701 & 1 other INTRON stet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad
2L	12293958	2L_12293958_SNP [dm3] 2L_12293958_SNP [dm6]	A	T	4.106e^-4	0.758	INTRON aret
2L	1091740	2L_1091740_DEL [dm3] 2L_1091740_DEL [dm6]	GAG	G	4.113e^-4	0.758	INTRON CG4629
3L	5600894	3L_5600894_SNP [dm3] 3L_5607794_SNP [dm6]	T	C	4.116e^-4	0.758	DOWNSTREAM mthl2 INTRON Eaf6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens

By genomic position
Variant impact
Gene name

Eye_Interocular_Dist phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results