DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.175e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.044330
In_3R_K	0.009451

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	8.8945	0.0117
In_3R_K	6.5979	0.0369

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2253 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	16537615	2R_16537615_SNP [dm3] 2R_20650110_SNP [dm6]	A	T	2.310e^-7	0.433	INTRON Lrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	14011624	2R_14011624_SNP [dm3] 2R_18124119_SNP [dm6]	A	G	5.512e^-7	0.517	UPSTREAM stau INTRON stau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1647129	3L_1647129_SNP [dm3] 3L_1647129_SNP [dm6]	A	G	9.257e^-7	0.579	NON_SYNONYMOUS_CODING CG17249 UPSTREAM Bro	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	2381060	3R_2381060_SNP [dm3] 3R_6555338_SNP [dm6]	C	A	3.664e^-6	0.82	INTRON dpr11
3R	23441415	3R_23441415_SNP [dm3] 3R_27615693_SNP [dm6]	A	C	4.068e^-6	0.82	INTRON Tusp
3R	7280728	3R_7280728_SNP [dm3] 3R_11455006_SNP [dm6]	T	A	4.460e^-6	0.82	UPSTREAM PGRP-LB INTRON CG17230 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	7278969	3R_7278969_SNP [dm3] 3R_11453247_SNP [dm6]	A	G	5.247e^-6	0.82	SYNONYMOUS_CODING PGRP-LB INTRON CG17230	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7278942	3R_7278942_SNP [dm3] 3R_11453220_SNP [dm6]	A	G	5.431e^-6	0.82	SYNONYMOUS_CODING PGRP-LB INTRON CG17230	TF binding site mE1_TFBS_chinmo
3L	7278223	3L_7278223_SNP [dm3] 3L_7285123_SNP [dm6]	T	G	6.082e^-6	0.82	UTR_5_PRIME unc-13-4A	TF binding site mE1_TFBS_cad
3L	14356997	3L_14356997_SNP [dm3] 3L_14363897_SNP [dm6]	T	A	6.105e^-6	0.82	INTRON fz
2L	22020494	2L_22020494_SNP [dm3] 2L_22020494_SNP [dm6]	A	G	8.325e^-6	0.82	DOWNSTREAM CR33987 INTRON tio	TF binding site mE1_TFBS_Trl
3L	1647215	3L_1647215_SNP [dm3] 3L_1647215_SNP [dm6]	T	C	8.375e^-6	0.82	SYNONYMOUS_CODING CG17249 UPSTREAM Bro	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	5130756	3L_5130756_SNP [dm3] 3L_5137656_SNP [dm6]	G	T	8.629e^-6	0.82	SYNONYMOUS_CODING CG4611 DOWNSTREAM Prpk	TF binding site mE1_TFBS_chinmo
2R	16866762	2R_16866762_SNP [dm3] 2R_20979257_SNP [dm6]	A	T	9.226e^-6	0.82	START_GAINED CG9313 UTR_5_PRIME CG9313 UPSTREAM CG15650 & 1 other
3R	7279083	3R_7279083_SNP [dm3] 3R_11453361_SNP [dm6]	A	C	9.430e^-6	0.82	INTRON CG17230 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25136442	3R_25136442_SNP [dm3] 3R_29310720_SNP [dm6]	A	G	9.864e^-6	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	1645303	3L_1645303_SNP [dm3] 3L_1645303_SNP [dm6]	A	T	1.179e^-5	0.82	UPSTREAM CG13919 & 1 other DOWNSTREAM CG17249 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11251034	2R_11251034_INS [dm3] 2R_15363529_INS [dm6]	A	ATA	1.197e^-5	0.82	INTRON unc-5
X	16052627	X_16052627_SNP [dm3] X_16158594_SNP [dm6]	T	C	1.241e^-5	0.82	INTERGENIC
3L	1645300	3L_1645300_SNP [dm3] 3L_1645300_SNP [dm6]	A	T	1.260e^-5	0.82	UPSTREAM CG13919 & 1 other DOWNSTREAM CG17249 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1645305	3L_1645305_SNP [dm3] 3L_1645305_SNP [dm6]	G	C	1.260e^-5	0.82	UPSTREAM CG13919 & 1 other DOWNSTREAM CG17249 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1645306	3L_1645306_SNP [dm3] 3L_1645306_SNP [dm6]	C	T	1.260e^-5	0.82	UPSTREAM CG13919 & 1 other DOWNSTREAM CG17249 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1645311	3L_1645311_DEL [dm3] 3L_1645311_DEL [dm6]	CA	C	1.260e^-5	0.82	UPSTREAM CG13919 & 1 other DOWNSTREAM CG17249 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	21914973	2L_21914973_SNP [dm3] 2L_21914973_SNP [dm6]	T	C	1.305e^-5	0.82	SPLICE_SITE_REGION CG31600 INTRON CG31600
2L	21802210	2L_21802210_SNP [dm3] 2L_21802210_SNP [dm6]	G	A	1.376e^-5	0.82	INTERGENIC
3R	16294815	3R_16294815_SNP [dm3] 3R_20469093_SNP [dm6]	G	A	1.380e^-5	0.82	INTRON Gfrl
3R	19625870	3R_19625870_SNP [dm3] 3R_23800148_SNP [dm6]	G	A	1.451e^-5	0.82	NON_SYNONYMOUS_CODING mbc
3R	7281547	3R_7281547_SNP [dm3] 3R_11455825_SNP [dm6]	G	A	1.491e^-5	0.82	INTRON CG17230 & 1 other
3L	722590	3L_722590_SNP [dm3] 3L_722590_SNP [dm6]	A	T	1.526e^-5	0.82	INTERGENIC
X	17062351	X_17062351_SNP [dm3] X_17168318_SNP [dm6]	T	A	1.628e^-5	0.82	INTRON baz
X	12021418	X_12021418_INS [dm3] X_12127385_INS [dm6]	A	AAA	1.647e^-5	0.82	UPSTREAM Ten-a INTRON Ten-a
3L	718515	3L_718515_SNP [dm3] 3L_718515_SNP [dm6]	A	C	1.691e^-5	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3417516	2L_3417516_SNP [dm3] 2L_3417516_SNP [dm6]	A	G	1.751e^-5	0.82	UTR_3_PRIME CG31952 INTRON pgant2
2L	18871899	2L_18871899_SNP [dm3] 2L_18871899_SNP [dm6]	T	C	1.813e^-5	0.82	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	22020382	2L_22020382_SNP [dm3] 2L_22020382_SNP [dm6]	G	T	1.843e^-5	0.82	DOWNSTREAM CR33987 INTRON tio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	19570657	3R_19570657_SNP [dm3] 3R_23744935_SNP [dm6]	A	G	2.089e^-5	0.82	INTRON Hmgcr
3L	1646170	3L_1646170_SNP [dm3] 3L_1646170_SNP [dm6]	G	A	2.109e^-5	0.82	SYNONYMOUS_CODING CG17249 UPSTREAM alphaCOP DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8857647	3L_8857647_SNP [dm3] 3L_8864547_SNP [dm6]	A	G	2.212e^-5	0.82	INTRON dally
X	9500123	X_9500123_SNP [dm3] X_9606090_SNP [dm6]	C	T	2.289e^-5	0.82	UPSTREAM Lst8 DOWNSTREAM Aats-lys INTERGENIC
3L	13549586	3L_13549586_SNP [dm3] 3L_13556486_SNP [dm6]	C	A	2.347e^-5	0.82	INTRON bru-3
3L	10610526	3L_10610526_SNP [dm3] 3L_10617426_SNP [dm6]	C	G	2.449e^-5	0.82	INTERGENIC
3R	21491476	3R_21491476_SNP [dm3] 3R_25665754_SNP [dm6]	C	A	2.457e^-5	0.82	UPSTREAM Lgr3 DOWNSTREAM RASSF8 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20909411	2R_20909411_SNP [dm3] 2R_25021888_SNP [dm6]	T	A	2.565e^-5	0.82	INTRON uzip
3L	8547231	3L_8547231_SNP [dm3] 3L_8554131_SNP [dm6]	C	A	2.648e^-5	0.82	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5069599	X_5069599_INS [dm3] X_5175566_INS [dm6]	A	AACGCAA	2.665e^-5	0.82	CODON_INSERTION CG15465 UTR_5_PRIME rg INTRON rg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12545177	2R_12545177_SNP [dm3] 2R_16657672_SNP [dm6]	C	T	2.738e^-5	0.82	INTRON Picot
2R	5805954	2R_5805954_SNP [dm3] 2R_9918449_SNP [dm6]	T	C	2.817e^-5	0.82	INTRON Mef2
3L	1646793	3L_1646793_SNP [dm3] 3L_1646793_SNP [dm6]	G	A	2.841e^-5	0.82	NON_SYNONYMOUS_CODING CG17249 DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	8896256	X_8896256_SNP [dm3] X_9002223_SNP [dm6]	C	A	2.888e^-5	0.82	INTRON rdgA & 1 other
2R	5805963	2R_5805963_SNP [dm3] 2R_9918458_SNP [dm6]	G	T	2.999e^-5	0.82	INTRON Mef2
3L	1645310	3L_1645310_SNP [dm3] 3L_1645310_SNP [dm6]	C	T	3.011e^-5	0.82	UPSTREAM CG13919 & 1 other DOWNSTREAM CG17249 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	10204159	X_10204159_SNP [dm3] X_10310126_SNP [dm6]	C	A	3.096e^-5	0.82	INTRON alpha-Man-I
3R	7278960	3R_7278960_SNP [dm3] 3R_11453238_SNP [dm6]	G	A	3.104e^-5	0.82	SYNONYMOUS_CODING PGRP-LB INTRON CG17230	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13549795	3L_13549795_SNP [dm3] 3L_13556695_SNP [dm6]	A	G	3.165e^-5	0.82	INTRON bru-3
3L	1646534	3L_1646534_SNP [dm3] 3L_1646534_SNP [dm6]	A	G	3.257e^-5	0.82	SYNONYMOUS_CODING CG17249 DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16866821	2R_16866821_SNP [dm3] 2R_20979316_SNP [dm6]	G	T	3.298e^-5	0.82	UTR_5_PRIME CG9313 UPSTREAM CG9313 & 1 other
2L	12111309	2L_12111309_SNP [dm3] 2L_12111309_SNP [dm6]	T	C	3.346e^-5	0.82	SYNONYMOUS_CODING Phae2 DOWNSTREAM Phae1	TF binding site mE1_TFBS_cad
3R	23441360	3R_23441360_SNP [dm3] 3R_27615638_SNP [dm6]	T	G	3.398e^-5	0.82	INTRON Tusp
2R	5805961	2R_5805961_SNP [dm3] 2R_9918456_SNP [dm6]	T	C	3.468e^-5	0.82	INTRON Mef2
2R	15394516	2R_15394516_SNP [dm3] 2R_19507011_SNP [dm6]	T	A	3.474e^-5	0.82	UPSTREAM tRNA:H:56E INTERGENIC
3R	24090091	3R_24090091_SNP [dm3] 3R_28264369_SNP [dm6]	A	G	3.530e^-5	0.82	NON_SYNONYMOUS_CODING CG43124 UPSTREAM CG43125
2L	11456327	2L_11456327_SNP [dm3] 2L_11456327_SNP [dm6]	A	C	3.564e^-5	0.82	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	21998906	2L_21998906_SNP [dm3] 2L_21998906_SNP [dm6]	C	A	3.626e^-5	0.82	DOWNSTREAM CR44916 INTERGENIC	transposable element FlyBase
3R	7369247	3R_7369247_SNP [dm3] 3R_11543525_SNP [dm6]	T	A	3.699e^-5	0.82	UPSTREAM dpr4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	24427748	3R_24427748_SNP [dm3] 3R_28602026_SNP [dm6]	A	T	3.752e^-5	0.82	UPSTREAM snoRNA:Psi28S-3405c & 2 others DOWNSTREAM snoRNA:Psi28S-3405a & 2 others INTRON Hrb98DE
3R	14616571	3R_14616571_SNP [dm3] 3R_18790849_SNP [dm6]	T	C	3.835e^-5	0.82	INTRON CG7720
3L	8316065	3L_8316065_SNP [dm3] 3L_8322965_SNP [dm6]	G	A	3.843e^-5	0.82	DOWNSTREAM CG13670 INTERGENIC
2L	12274966	2L_12274966_SNP [dm3] 2L_12274966_SNP [dm6]	G	T	3.860e^-5	0.82	INTRON aret
2L	19239503	2L_19239503_SNP [dm3] 2L_19239503_SNP [dm6]	A	G	3.907e^-5	0.82	INTERGENIC
3L	21393248	3L_21393248_SNP [dm3] 3L_21400148_SNP [dm6]	A	T	3.908e^-5	0.82	INTRON rgn
3L	12583095	3L_12583095_SNP [dm3] 3L_12589995_SNP [dm6]	A	T	3.922e^-5	0.82	INTRON ara	TF binding site BDTNP1_TFBS_twi
2L	8807137	2L_8807137_SNP [dm3] 2L_8807137_SNP [dm6]	T	C	3.925e^-5	0.82	INTERGENIC
2L	21914924	2L_21914924_SNP [dm3] 2L_21914924_SNP [dm6]	T	C	3.938e^-5	0.82	NON_SYNONYMOUS_CODING CG31600
2R	20355319	2R_20355319_SNP [dm3] 2R_24467796_SNP [dm6]	T	C	3.953e^-5	0.82	INTRON CG13579
3R	8591424	3R_8591424_SNP [dm3] 3R_12765702_SNP [dm6]	A	G	3.953e^-5	0.82	INTRON beat-Vc
2R	15394517	2R_15394517_SNP [dm3] 2R_19507012_SNP [dm6]	A	G	3.957e^-5	0.82	UPSTREAM tRNA:H:56E INTERGENIC
3L	9307271	3L_9307271_DEL [dm3] 3L_9314171_DEL [dm6]	ATGACCTTATTACGA...	A	4.014e^-5	0.82	INTERGENIC
2R	14028495	2R_14028495_SNP [dm3] 2R_18140990_SNP [dm6]	T	C	4.271e^-5	0.82	UPSTREAM pAbp DOWNSTREAM Pcl INTRON pAbp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	17078271	X_17078271_SNP [dm3] X_17184238_SNP [dm6]	T	C	4.316e^-5	0.82	UPSTREAM CR44026 INTRON baz
3R	23519319	3R_23519319_SNP [dm3] 3R_27693597_SNP [dm6]	G	A	4.316e^-5	0.82	UPSTREAM CG43319 DOWNSTREAM CG12880 INTERGENIC
X	15738163	X_15738163_SNP [dm3] X_15844130_SNP [dm6]	C	A	4.369e^-5	0.82	START_GAINED Aats-arg UTR_5_PRIME Aats-arg UPSTREAM CG8578	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
2L	12294002	2L_12294002_SNP [dm3] 2L_12294002_SNP [dm6]	C	A	4.386e^-5	0.82	INTRON aret
3R	7276527	3R_7276527_SNP [dm3] 3R_11450805_SNP [dm6]	C	T	4.423e^-5	0.82	INTRON CG17230 & 1 other
2L	3839348	2L_3839348_SNP [dm3] 2L_3839348_SNP [dm6]	A	C	4.497e^-5	0.82	DOWNSTREAM slp2 INTERGENIC	regulatory region REDfly_CRMs
3R	5889411	3R_5889411_SNP [dm3] 3R_10063689_SNP [dm6]	C	A	4.555e^-5	0.82	UPSTREAM CG33631 DOWNSTREAM CG33630 INTERGENIC
3R	19073144	3R_19073144_SNP [dm3] 3R_23247422_SNP [dm6]	A	G	4.640e^-5	0.82	INTRON CG4467
2L	15386272	2L_15386272_INS [dm3] 2L_15386272_INS [dm6]	G	TTTC	4.660e^-5	0.82	INTERGENIC
2L	8506498	2L_8506498_SNP [dm3] 2L_8506498_SNP [dm6]	A	T	4.740e^-5	0.82	INTRON Dh31
3R	16295434	3R_16295434_SNP [dm3] 3R_20469712_SNP [dm6]	C	T	4.757e^-5	0.82	INTRON Gfrl
3R	7277793	3R_7277793_SNP [dm3] 3R_11452071_SNP [dm6]	T	C	4.775e^-5	0.82	UPSTREAM sals DOWNSTREAM PGRP-LB INTRON CG17230
3R	7277847	3R_7277847_DEL [dm3] 3R_11452125_DEL [dm6]	ATTAAAGTCTATGCCACTGC...	A	4.775e^-5	0.82	UPSTREAM sals DOWNSTREAM PGRP-LB INTRON CG17230
2L	3425135	2L_3425135_SNP [dm3] 2L_3425135_SNP [dm6]	C	G	4.859e^-5	0.82	INTRON pgant2
3L	12026303	3L_12026303_SNP [dm3] 3L_12033203_SNP [dm6]	G	C	4.865e^-5	0.82	DOWNSTREAM CG43993 INTRON rols
2R	16866778	2R_16866778_SNP [dm3] 2R_20979273_SNP [dm6]	G	T	4.867e^-5	0.82	UTR_5_PRIME CG9313 UPSTREAM CG15650 & 1 other
2L	21962090	2L_21962090_SNP [dm3] 2L_21962090_SNP [dm6]	A	G	4.930e^-5	0.82	INTERGENIC
2R	19822999	2R_19822999_SNP [dm3] 2R_23935476_SNP [dm6]	G	T	4.939e^-5	0.82	INTRON Ca-P60A
3R	19625641	3R_19625641_SNP [dm3] 3R_23799919_SNP [dm6]	G	A	4.996e^-5	0.82	SYNONYMOUS_CODING mbc
2R	13806936	2R_13806936_SNP [dm3] 2R_17919431_SNP [dm6]	G	T	5.069e^-5	0.82	INTRON Elk
X	9499586	X_9499586_SNP [dm3] X_9605553_SNP [dm6]	T	C	5.108e^-5	0.82	SYNONYMOUS_CODING Lst8 DOWNSTREAM Aats-lys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	12112048	2L_12112048_SNP [dm3] 2L_12112048_SNP [dm6]	A	T	5.388e^-5	0.82	UTR_3_PRIME Phae2 DOWNSTREAM Phae2	TF binding site mE1_TFBS_cad
2L	12163310	2L_12163310_SNP [dm3] 2L_12163310_SNP [dm6]	T	A	5.398e^-5	0.82	UPSTREAM ZnT33D DOWNSTREAM CG31861 INTRON CG31760
2L	15386274	2L_15386274_SNP [dm3] 2L_15386274_SNP [dm6]	A	T	5.400e^-5	0.82	INTERGENIC
2L	15386277	2L_15386277_INS [dm3] 2L_15386277_INS [dm6]	A	AAC	5.400e^-5	0.82	INTERGENIC
2R	12176326	2R_12176326_SNP [dm3] 2R_16288821_SNP [dm6]	C	T	5.421e^-5	0.82	NON_SYNONYMOUS_CODING CG30099 UPSTREAM CG30324 & 1 other DOWNSTREAM CR43730	TF binding site mE1_TFBS_cad
2R	14015164	2R_14015164_SNP [dm3] 2R_18127659_SNP [dm6]	G	C	5.442e^-5	0.82	UPSTREAM Dip3 INTRON Spn55B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3R	26098869	3R_26098869_SNP [dm3] 3R_30273147_SNP [dm6]	A	C	5.488e^-5	0.82	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	13473360	3R_13473360_SNP [dm3] 3R_17647638_SNP [dm6]	T	C	5.536e^-5	0.82	UPSTREAM CG14322 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7875165	3L_7875165_SNP [dm3] 3L_7882065_SNP [dm6]	C	G	5.545e^-5	0.82	INTRON CG32365
3L	8524135	3L_8524135_SNP [dm3] 3L_8531035_SNP [dm6]	G	A	5.593e^-5	0.82	SYNONYMOUS_CODING foi	TF binding site mE1_TFBS_cad
3L	14370112	3L_14370112_SNP [dm3] 3L_14377012_SNP [dm6]	C	A	5.614e^-5	0.82	INTERGENIC
2L	9155352	2L_9155352_SNP [dm3] 2L_9155352_SNP [dm6]	G	T	5.634e^-5	0.82	INTRON CG32982
3R	5878383	3R_5878383_SNP [dm3] 3R_10052661_SNP [dm6]	G	T	5.691e^-5	0.82	UPSTREAM Npc2e DOWNSTREAM CR44192 INTRON Fancl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6101005	2L_6101005_SNP [dm3] 2L_6101005_SNP [dm6]	A	G	5.692e^-5	0.82	INTRON stai	TF binding site BDTNP1_TFBS_dl
3L	5130681	3L_5130681_SNP [dm3] 3L_5137581_SNP [dm6]	G	A	5.720e^-5	0.82	SYNONYMOUS_CODING CG4611	TF binding site mE1_TFBS_chinmo
3R	5878395	3R_5878395_SNP [dm3] 3R_10052673_SNP [dm6]	A	G	5.741e^-5	0.82	UPSTREAM Npc2e DOWNSTREAM CR44192 INTRON Fancl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1645299	3L_1645299_SNP [dm3] 3L_1645299_SNP [dm6]	T	C	5.838e^-5	0.82	UPSTREAM CG13919 & 1 other DOWNSTREAM CG17249 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	20345607	2R_20345607_SNP [dm3] 2R_24458084_SNP [dm6]	A	T	5.845e^-5	0.82	INTRON CG13579
2L	12260510	2L_12260510_SNP [dm3] 2L_12260510_SNP [dm6]	T	C	5.904e^-5	0.82	INTRON aret
2R	17772302	2R_17772302_INS [dm3] 2R_21884797_INS [dm6]	A	AA	5.936e^-5	0.82	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14236308	3L_14236308_SNP [dm3] 3L_14243208_SNP [dm6]	A	T	6.035e^-5	0.82	INTERGENIC
2L	2885564	2L_2885564_SNP [dm3] 2L_2885564_SNP [dm6]	A	T	6.202e^-5	0.82	UPSTREAM lilli & 1 other INTRON NTPase	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	15386212	2L_15386212_SNP [dm3] 2L_15386212_SNP [dm6]	T	G	6.226e^-5	0.82	INTERGENIC
2L	15386264	2L_15386264_MNP [dm3] 2L_15386264_MNP [dm6]	AGA	TCT	6.236e^-5	0.82	INTERGENIC
2L	15386268	2L_15386268_MNP [dm3] 2L_15386268_MNP [dm6]	AAC	TTT	6.236e^-5	0.82	INTERGENIC
2L	21851919	2L_21851919_INS [dm3] 2L_21851919_INS [dm6]	T	TTCT	6.241e^-5	0.82	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	9877897	2L_9877897_SNP [dm3] 2L_9877897_SNP [dm6]	G	T	6.296e^-5	0.82	UTR_5_PRIME nAChRalpha6 INTRON nAChRalpha6
2L	21929216	2L_21929216_SNP [dm3] 2L_21929216_SNP [dm6]	A	G	6.305e^-5	0.82	INTERGENIC
2R	15726207	2R_15726207_DEL [dm3] 2R_19838702_DEL [dm6]	AA	A	6.359e^-5	0.82	INTERGENIC
3R	18997385	3R_18997385_SNP [dm3] 3R_23171663_SNP [dm6]	T	C	6.363e^-5	0.82	INTRON Irk1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	5743499	X_5743499_SNP [dm3] X_5849466_SNP [dm6]	A	C	6.368e^-5	0.82	INTERGENIC
X	11952680	X_11952680_SNP [dm3] X_12058647_SNP [dm6]	G	C	6.410e^-5	0.82	INTRON CR43960 & 1 other
X	4604535	X_4604535_SNP [dm3] X_4710502_SNP [dm6]	A	T	6.412e^-5	0.82	INTRON Proc-R
X	18645733	X_18645733_SNP [dm3] X_18751700_SNP [dm6]	C	A	6.487e^-5	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3412057	2L_3412057_SNP [dm3] 2L_3412057_SNP [dm6]	G	A	6.581e^-5	0.82	DOWNSTREAM CG8840 INTRON pgant2
3R	21876370	3R_21876370_SNP [dm3] 3R_26050648_SNP [dm6]	T	G	6.620e^-5	0.82	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17396078	3R_17396078_SNP [dm3] 3R_21570356_SNP [dm6]	T	C	6.632e^-5	0.82	UTR_3_PRIME InR
3R	7366241	3R_7366241_SNP [dm3] 3R_11540519_SNP [dm6]	A	G	6.670e^-5	0.82	INTRON dpr4
2L	945291	2L_945291_SNP [dm3] 2L_945291_SNP [dm6]	C	T	6.833e^-5	0.82	INTRON CG4341
3L	722584	3L_722584_SNP [dm3] 3L_722584_SNP [dm6]	T	G	6.908e^-5	0.82	INTERGENIC
2L	7057433	2L_7057433_SNP [dm3] 2L_7057433_SNP [dm6]	C	T	6.941e^-5	0.82	SYNONYMOUS_CODING Mnn1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	848725	3L_848725_SNP [dm3] 3L_848725_SNP [dm6]	T	G	6.985e^-5	0.82	SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	7276897	3R_7276897_SNP [dm3] 3R_11451175_SNP [dm6]	C	T	7.013e^-5	0.82	UPSTREAM sals INTRON CG17230 & 1 other
2L	15386261	2L_15386261_INS [dm3] 2L_15386261_INS [dm6]	T	TAG	7.032e^-5	0.82	INTERGENIC
3R	19073051	3R_19073051_SNP [dm3] 3R_23247329_SNP [dm6]	A	T	7.082e^-5	0.82	INTRON CG4467
2L	21866518	2L_21866518_SNP [dm3] 2L_21866518_SNP [dm6]	A	G	7.085e^-5	0.82	UPSTREAM CR44917 & 1 other DOWNSTREAM CR44919 INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19934832	X_19934832_SNP [dm3] X_20040799_SNP [dm6]	C	T	7.149e^-5	0.82	INTRON Dop2R
3R	23441340	3R_23441340_SNP [dm3] 3R_27615618_SNP [dm6]	G	C	7.177e^-5	0.82	INTRON Tusp
2L	19239501	2L_19239501_SNP [dm3] 2L_19239501_SNP [dm6]	C	A	7.244e^-5	0.82	INTERGENIC
3R	27223093	3R_27223093_SNP [dm3] 3R_31397371_SNP [dm6]	G	C	7.318e^-5	0.82	SYNONYMOUS_CODING Gcn2	TF binding site mE1_TFBS_cad
2R	16361229	2R_16361229_SNP [dm3] 2R_20473724_SNP [dm6]	G	T	7.372e^-5	0.82	INTRON CG12484
3L	22690909	3L_22690909_SNP [dm3] 3L_22697809_SNP [dm6]	A	G	7.451e^-5	0.82	UTR_3_PRIME CG32453 DOWNSTREAM CG32453
3L	9399502	3L_9399502_SNP [dm3] 3L_9406402_SNP [dm6]	A	C	7.497e^-5	0.82	UTR_3_PRIME CG4022 DOWNSTREAM Cpr67B
2L	10280525	2L_10280525_SNP [dm3] 2L_10280525_SNP [dm6]	G	A	7.553e^-5	0.82	SYNONYMOUS_CODING CG34043
3R	1938392	3R_1938392_SNP [dm3] 3R_6112670_SNP [dm6]	A	G	7.622e^-5	0.82	UPSTREAM Obp83g INTERGENIC	regulatory region REDfly_CRMs
3L	355515	3L_355515_SNP [dm3] 3L_355515_SNP [dm6]	C	T	7.738e^-5	0.82	SYNONYMOUS_CODING Ptpmeg UPSTREAM CG1231
2R	17956374	2R_17956374_SNP [dm3] 2R_22068869_SNP [dm6]	G	T	7.749e^-5	0.82	SYNONYMOUS_CODING Snp DOWNSTREAM CG44249 & 1 other
X	20194808	X_20194808_SNP [dm3] X_20323781_SNP [dm6]	T	C	7.770e^-5	0.82	INTRON CG1504
2R	20100811	2R_20100811_DEL [dm3] 2R_24213288_DEL [dm6]	TT	T	7.803e^-5	0.82	UTR_3_PRIME CG30419
3R	3269072	3R_3269072_DEL [dm3] 3R_7443350_DEL [dm6]	TATCAT	T	7.804e^-5	0.82	INTERGENIC
3L	2172352	3L_2172352_SNP [dm3] 3L_2172352_SNP [dm6]	G	A	7.828e^-5	0.82	DOWNSTREAM CG15820 EXON CR15821
2L	7058946	2L_7058946_SNP [dm3] 2L_7058946_SNP [dm6]	A	G	7.913e^-5	0.82	SYNONYMOUS_CODING Mnn1 DOWNSTREAM CG31907	TF binding site mE1_TFBS_cad
3L	8547757	3L_8547757_SNP [dm3] 3L_8554657_SNP [dm6]	A	T	7.974e^-5	0.82	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1376540	3L_1376540_SNP [dm3] 3L_1376540_SNP [dm6]	G	A	8.010e^-5	0.82	INTRON Ptp61F & 1 other
3R	13139061	3R_13139061_SNP [dm3] 3R_17313339_SNP [dm6]	G	T	8.032e^-5	0.82	INTERGENIC
2L	21917165	2L_21917165_SNP [dm3] 2L_21917165_SNP [dm6]	A	C	8.038e^-5	0.82	NON_SYNONYMOUS_CODING CG11634	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7353515	3R_7353515_SNP [dm3] 3R_11527793_SNP [dm6]	T	A	8.207e^-5	0.82	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23513340	3R_23513340_SNP [dm3] 3R_27687618_SNP [dm6]	C	T	8.295e^-5	0.82	NON_SYNONYMOUS_CODING CG31055 INTRON CG12880	TF binding site mE1_TFBS_chinmo
3L	13549577	3L_13549577_SNP [dm3] 3L_13556477_SNP [dm6]	G	A	8.342e^-5	0.82	INTRON bru-3
2L	5229881	2L_5229881_SNP [dm3] 2L_5229881_SNP [dm6]	T	C	8.347e^-5	0.82	INTRON tkv	TF binding site mE1_TFBS_sbb
2R	15394537	2R_15394537_SNP [dm3] 2R_19507032_SNP [dm6]	G	C	8.349e^-5	0.82	UPSTREAM tRNA:H:56E INTERGENIC
3R	25155781	3R_25155781_SNP [dm3] 3R_29330059_SNP [dm6]	G	T	8.353e^-5	0.82	INTERGENIC
3R	11586547	3R_11586547_SNP [dm3] 3R_15760825_SNP [dm6]	G	A	8.373e^-5	0.82	INTERGENIC
2L	12261116	2L_12261116_DEL [dm3] 2L_12261116_DEL [dm6]	TTG	A	8.533e^-5	0.82	INTRON aret	insulator Insulator_Class_II.mE01
2L	1982416	2L_1982416_SNP [dm3] 2L_1982416_SNP [dm6]	C	A	8.552e^-5	0.82	SYNONYMOUS_CODING CG7289 DOWNSTREAM CG15362	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	17666690	3R_17666690_SNP [dm3] 3R_21840968_SNP [dm6]	T	A	8.565e^-5	0.82	INTERGENIC
3L	13549850	3L_13549850_SNP [dm3] 3L_13556750_SNP [dm6]	A	G	8.565e^-5	0.82	INTRON bru-3
3R	16294229	3R_16294229_SNP [dm3] 3R_20468507_SNP [dm6]	C	T	8.635e^-5	0.82	INTRON Gfrl
2L	19239640	2L_19239640_SNP [dm3] 2L_19239640_SNP [dm6]	A	T	8.659e^-5	0.82	INTERGENIC
3L	2655053	3L_2655053_SNP [dm3] 3L_2655053_SNP [dm6]	G	C	8.665e^-5	0.82	NON_SYNONYMOUS_CODING CG42304 UTR_3_PRIME Snup DOWNSTREAM Fife
2R	20889987	2R_20889987_INS [dm3] 2R_25002464_INS [dm6]	C	CAGTGTTAGTCTTACTTAAC...	8.704e^-5	0.82	INTRON zip
2R	4202220	2R_4202220_SNP [dm3] 2R_8314715_SNP [dm6]	T	C	8.718e^-5	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8160201	X_8160201_SNP [dm3] X_8266168_SNP [dm6]	A	T	8.730e^-5	0.82	SYNONYMOUS_CODING CG1632	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10122680	3R_10122680_SNP [dm3] 3R_14296958_SNP [dm6]	T	A	8.775e^-5	0.82	INTRON CG12207
3L	8547701	3L_8547701_SNP [dm3] 3L_8554601_SNP [dm6]	A	G	8.855e^-5	0.82	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8547718	3L_8547718_SNP [dm3] 3L_8554618_SNP [dm6]	C	A	8.855e^-5	0.82	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9644956	2L_9644956_SNP [dm3] 2L_9644956_SNP [dm6]	T	C	8.864e^-5	0.82	SYNONYMOUS_CODING Apoltp
3R	25154332	3R_25154332_SNP [dm3] 3R_29328610_SNP [dm6]	G	T	8.880e^-5	0.82	INTERGENIC
3R	13139315	3R_13139315_DEL [dm3] 3R_17313593_DEL [dm6]	AC	A	8.888e^-5	0.82	INTERGENIC
3R	16988813	3R_16988813_SNP [dm3] 3R_21163091_SNP [dm6]	C	G	8.928e^-5	0.82	UPSTREAM CG5810 INTRON SNF4Agamma
3L	7831827	3L_7831827_SNP [dm3] 3L_7838727_SNP [dm6]	G	A	8.933e^-5	0.82	INTRON Pdp1	regulatory region REDfly_CRMs
3R	16294225	3R_16294225_SNP [dm3] 3R_20468503_SNP [dm6]	G	A	8.973e^-5	0.82	INTRON Gfrl
3L	390335	3L_390335_SNP [dm3] 3L_390335_SNP [dm6]	C	T	9.055e^-5	0.82	INTRON trh
2R	16361176	2R_16361176_SNP [dm3] 2R_20473671_SNP [dm6]	A	G	9.072e^-5	0.82	INTRON CG12484
3L	1647279	3L_1647279_SNP [dm3] 3L_1647279_SNP [dm6]	T	G	9.080e^-5	0.82	NON_SYNONYMOUS_CODING CG17249 UPSTREAM Bro	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9715763	3L_9715763_SNP [dm3] 3L_9722663_SNP [dm6]	C	T	9.147e^-5	0.82	NON_SYNONYMOUS_CODING nbs UPSTREAM defl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	20194119	X_20194119_SNP [dm3] X_20323092_SNP [dm6]	G	A	9.241e^-5	0.82	INTRON CG1504
2L	11082053	2L_11082053_SNP [dm3] 2L_11082053_SNP [dm6]	T	C	9.412e^-5	0.82	UPSTREAM AstC INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	11434514	3L_11434514_DEL [dm3] 3L_11441414_DEL [dm6]	CATACATTAGTGAAGAA...	G	9.420e^-5	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	3662956	2R_3662956_SNP [dm3] 2R_7775451_SNP [dm6]	A	T	9.421e^-5	0.82	INTRON CG30497 & 1 other
3R	14616564	3R_14616564_SNP [dm3] 3R_18790842_SNP [dm6]	T	C	9.424e^-5	0.82	INTRON CG7720
2R	18443940	2R_18443940_DEL [dm3] 2R_22556435_DEL [dm6]	GCTGCGG	G	9.447e^-5	0.82	CODON_DELETION px	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7365940	3R_7365940_SNP [dm3] 3R_11540218_SNP [dm6]	C	T	9.453e^-5	0.82	INTRON dpr4
3L	1317457	3L_1317457_SNP [dm3] 3L_1317457_SNP [dm6]	G	A	9.480e^-5	0.82	SYNONYMOUS_CODING CG9153	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17030654	2R_17030654_SNP [dm3] 2R_21143149_SNP [dm6]	A	C	9.483e^-5	0.82	SYNONYMOUS_CODING CG9406 UPSTREAM Magi & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	718514	3L_718514_SNP [dm3] 3L_718514_SNP [dm6]	A	G	9.506e^-5	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11857631	3R_11857631_SNP [dm3] 3R_16031909_SNP [dm6]	A	C	9.536e^-5	0.82	INTRON pnr
2R	16866701	2R_16866701_SNP [dm3] 2R_20979196_SNP [dm6]	G	A	9.565e^-5	0.82	UTR_5_PRIME CG9313 UPSTREAM CG15650 & 1 other
3R	24667341	3R_24667341_SNP [dm3] 3R_28841619_SNP [dm6]	G	A	9.605e^-5	0.82	INTRON Apc	TF binding site BDTNP1_TFBS_twi
2L	2899342	2L_2899342_SNP [dm3] 2L_2899342_SNP [dm6]	A	T	9.653e^-5	0.82	INTRON lilli	TF binding site mE1_TFBS_Trl
2L	21929390	2L_21929390_SNP [dm3] 2L_21929390_SNP [dm6]	G	C	9.658e^-5	0.82	UPSTREAM CR45334 INTERGENIC
2L	19315003	2L_19315003_SNP [dm3] 2L_19315003_SNP [dm6]	A	G	9.748e^-5	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7281663	3R_7281663_SNP [dm3] 3R_11455941_SNP [dm6]	G	T	9.816e^-5	0.82	INTRON CG17230 & 1 other
2L	2887446	2L_2887446_SNP [dm3] 2L_2887446_SNP [dm6]	A	T	9.857e^-5	0.82	UPSTREAM lilli INTRON lilli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3R	13163039	3R_13163039_DEL [dm3] 3R_17337317_DEL [dm6]	CTAAATGAGCCGTTGGC...	C	9.919e^-5	0.82	INTRON beat-IIa
2L	3997257	2L_3997257_INS [dm3] 2L_3997257_INS [dm6]	T	TGA	9.937e^-5	0.82	INTERGENIC
2L	15386229	2L_15386229_SNP [dm3] 2L_15386229_SNP [dm6]	G	A	9.938e^-5	0.82	INTERGENIC
2L	15386235	2L_15386235_MNP [dm3] 2L_15386235_MNP [dm6]	TAA	ATT	9.938e^-5	0.82	INTERGENIC
X	19871581	X_19871581_SNP [dm3] X_19977548_SNP [dm6]	T	G	9.974e^-5	0.82	INTERGENIC
2R	12704562	2R_12704562_SNP [dm3] 2R_16817057_SNP [dm6]	T	C	1.001e^-4	0.82	SYNONYMOUS_CODING CG5550 DOWNSTREAM CR43417	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16295315	3R_16295315_SNP [dm3] 3R_20469593_SNP [dm6]	T	G	1.002e^-4	0.82	INTRON Gfrl
X	8430534	X_8430534_SNP [dm3] X_8536501_SNP [dm6]	C	A	1.002e^-4	0.82	INTRON Nrg
3L	10734158	3L_10734158_SNP [dm3] 3L_10741058_SNP [dm6]	T	C	1.013e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7046845	3L_7046845_SNP [dm3] 3L_7053745_SNP [dm6]	T	C	1.017e^-4	0.82	DOWNSTREAM Mp INTERGENIC
2L	6100946	2L_6100946_SNP [dm3] 2L_6100946_SNP [dm6]	G	A	1.017e^-4	0.82	INTRON stai	TF binding site BDTNP1_TFBS_dl
X	13433253	X_13433253_SNP [dm3] X_13539220_SNP [dm6]	G	A	1.021e^-4	0.82	INTERGENIC
2R	4678999	2R_4678999_SNP [dm3] 2R_8791494_SNP [dm6]	T	C	1.032e^-4	0.82	INTERGENIC
X	14360918	X_14360918_SNP [dm3] X_14466885_SNP [dm6]	T	G	1.052e^-4	0.82	INTERGENIC
3L	3497257	3L_3497257_SNP [dm3] 3L_3497257_SNP [dm6]	G	T	1.053e^-4	0.82	INTRON CG42324
3R	7331866	3R_7331866_SNP [dm3] 3R_11506144_SNP [dm6]	C	T	1.063e^-4	0.82	DOWNSTREAM dpr5 INTERGENIC
2L	676582	2L_676582_SNP [dm3] 2L_676582_SNP [dm6]	A	G	1.063e^-4	0.82	INTRON ds
3R	7273988	3R_7273988_SNP [dm3] 3R_11448266_SNP [dm6]	C	T	1.065e^-4	0.82	UTR_5_PRIME sals INTRON CG17230 & 1 other
3R	7276368	3R_7276368_SNP [dm3] 3R_11450646_SNP [dm6]	C	T	1.068e^-4	0.82	INTRON CG17230 & 1 other
3R	7277308	3R_7277308_SNP [dm3] 3R_11451586_SNP [dm6]	C	T	1.068e^-4	0.82	UPSTREAM sals INTRON CG17230 & 1 other
2R	13804695	2R_13804695_SNP [dm3] 2R_17917190_SNP [dm6]	T	G	1.079e^-4	0.82	INTRON Elk
2R	14343296	2R_14343296_INS [dm3] 2R_18455791_INS [dm6]	A	CGC	1.093e^-4	0.82	DOWNSTREAM CG30116 INTERGENIC
X	229459	X_229459_SNP [dm3] X_335426_SNP [dm6]	A	G	1.132e^-4	0.82	UPSTREAM CG32816 INTRON CG3777 & 1 other
3R	11858178	3R_11858178_SNP [dm3] 3R_16032456_SNP [dm6]	C	T	1.140e^-4	0.82	INTRON pnr	TF binding site mE1_TFBS_inv
2L	11226441	2L_11226441_SNP [dm3] 2L_11226441_SNP [dm6]	G	T	1.142e^-4	0.82	INTRON ab
2L	8809467	2L_8809467_INS [dm3] 2L_8809467_INS [dm6]	C	CC	1.144e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	25319407	3R_25319407_SNP [dm3] 3R_29493685_SNP [dm6]	G	C	1.144e^-4	0.82	UPSTREAM Diedel & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2R	10663387	2R_10663387_SNP [dm3] 2R_14775882_SNP [dm6]	T	C	1.148e^-4	0.82	INTRON kn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	9307305	3L_9307305_SNP [dm3] 3L_9314205_SNP [dm6]	G	C	1.148e^-4	0.82	INTERGENIC
3R	13188922	3R_13188922_SNP [dm3] 3R_17363200_SNP [dm6]	G	C	1.149e^-4	0.82	INTRON beat-IIa
X	3559892	X_3559892_SNP [dm3] X_3665859_SNP [dm6]	C	T	1.150e^-4	0.82	UTR_3_PRIME AstA-R1
3R	5899901	3R_5899901_SNP [dm3] 3R_10074179_SNP [dm6]	A	C	1.153e^-4	0.82	SYNONYMOUS_CODING CG5361 DOWNSTREAM nerfin-2
3L	8524022	3L_8524022_SNP [dm3] 3L_8530922_SNP [dm6]	G	A	1.156e^-4	0.82	NON_SYNONYMOUS_CODING foi	TF binding site mE1_TFBS_cad
X	19871890	X_19871890_SNP [dm3] X_19977857_SNP [dm6]	C	T	1.162e^-4	0.82	INTERGENIC
2L	2922161	2L_2922161_SNP [dm3] 2L_2922161_SNP [dm6]	T	A	1.162e^-4	0.82	INTRON lilli
X	9501583	X_9501583_SNP [dm3] X_9607550_SNP [dm6]	A	G	1.166e^-4	0.82	SYNONYMOUS_CODING Aats-lys	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14616583	3R_14616583_SNP [dm3] 3R_18790861_SNP [dm6]	G	T	1.169e^-4	0.82	INTRON CG7720
3R	23441327	3R_23441327_SNP [dm3] 3R_27615605_SNP [dm6]	G	A	1.183e^-4	0.82	INTRON Tusp
2L	10280532	2L_10280532_SNP [dm3] 2L_10280532_SNP [dm6]	G	T	1.191e^-4	0.82	NON_SYNONYMOUS_CODING CG34043
2L	12078440	2L_12078440_SNP [dm3] 2L_12078440_SNP [dm6]	C	T	1.195e^-4	0.82	DOWNSTREAM CG14947 INTERGENIC	regulatory region REDfly_CRMs
3L	14361935	3L_14361935_SNP [dm3] 3L_14368835_SNP [dm6]	T	C	1.213e^-4	0.82	DOWNSTREAM CG13481 & 1 other INTERGENIC
2R	12828595	2R_12828595_SNP [dm3] 2R_16941090_SNP [dm6]	T	G	1.223e^-4	0.82	INTRON Pkc53E
3R	16184077	3R_16184077_SNP [dm3] 3R_20358355_SNP [dm6]	A	T	1.232e^-4	0.82	UPSTREAM CR45023 INTERGENIC
3L	22218529	3L_22218529_SNP [dm3] 3L_22225429_SNP [dm6]	G	T	1.232e^-4	0.82	DOWNSTREAM CR45035 INTRON olf413	TF binding site BDTNP1_TFBS_dl
3L	10342087	3L_10342087_SNP [dm3] 3L_10348987_SNP [dm6]	G	A	1.235e^-4	0.82	INTRON CR44327
2L	2889414	2L_2889414_SNP [dm3] 2L_2889414_SNP [dm6]	A	T	1.236e^-4	0.82	UPSTREAM lilli INTRON lilli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	2842286	3R_2842286_SNP [dm3] 3R_7016564_SNP [dm6]	C	A	1.238e^-4	0.82	INTERGENIC
3R	27223099	3R_27223099_SNP [dm3] 3R_31397377_SNP [dm6]	C	T	1.244e^-4	0.82	SYNONYMOUS_CODING Gcn2	TF binding site mE1_TFBS_cad
2R	19548034	2R_19548034_SNP [dm3] 2R_23660511_SNP [dm6]	T	G	1.245e^-4	0.82	UTR_5_PRIME Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	9644869	2L_9644869_SNP [dm3] 2L_9644869_SNP [dm6]	G	A	1.249e^-4	0.82	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_cad
3R	11856703	3R_11856703_SNP [dm3] 3R_16030981_SNP [dm6]	A	G	1.252e^-4	0.82	INTRON pnr
3R	6159635	3R_6159635_SNP [dm3] 3R_10333913_SNP [dm6]	A	G	1.258e^-4	0.82	SYNONYMOUS_CODING sle	TF binding site mE1_TFBS_sens
2R	20024364	2R_20024364_SNP [dm3] 2R_24136841_SNP [dm6]	G	T	1.258e^-4	0.82	SYNONYMOUS_CODING CG4065	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18645717	X_18645717_SNP [dm3] X_18751684_SNP [dm6]	G	T	1.262e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8076238	2L_8076238_SNP [dm3] 2L_8076238_SNP [dm6]	C	A	1.266e^-4	0.82	SYNONYMOUS_CODING Mcr
2R	14083744	2R_14083744_SNP [dm3] 2R_18196239_SNP [dm6]	C	A	1.267e^-4	0.82	INTERGENIC
3L	2172172	3L_2172172_SNP [dm3] 3L_2172172_SNP [dm6]	G	A	1.274e^-4	0.82	SPLICE_SITE_REGION CR15821 DOWNSTREAM CG15820 INTRON CR15821
3R	7367748	3R_7367748_SNP [dm3] 3R_11542026_SNP [dm6]	G	T	1.286e^-4	0.82	INTRON dpr4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	20345603	2R_20345603_SNP [dm3] 2R_24458080_SNP [dm6]	T	A	1.288e^-4	0.82	INTRON CG13579
2R	3136305	2R_3136305_SNP [dm3] 2R_7248800_SNP [dm6]	G	A	1.292e^-4	0.82	UPSTREAM Gadd45 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	15046200	2R_15046200_SNP [dm3] 2R_19158695_SNP [dm6]	C	G	1.297e^-4	0.82	INTRON ena	TF binding site mE1_TFBS_inv
3R	17666708	3R_17666708_SNP [dm3] 3R_21840986_SNP [dm6]	C	T	1.298e^-4	0.82	INTERGENIC
3L	1306890	3L_1306890_SNP [dm3] 3L_1306890_SNP [dm6]	A	C	1.299e^-4	0.82	SYNONYMOUS_CODING CG2277 UPSTREAM CG2469	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15386281	2L_15386281_SNP [dm3] 2L_15386281_SNP [dm6]	A	T	1.302e^-4	0.82	INTERGENIC
2R	14343302	2R_14343302_SNP [dm3] 2R_18455797_SNP [dm6]	T	C	1.308e^-4	0.82	DOWNSTREAM CG30116 INTERGENIC
X	18645749	X_18645749_SNP [dm3] X_18751716_SNP [dm6]	C	A	1.318e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2649550	3L_2649550_SNP [dm3] 3L_2649550_SNP [dm6]	G	T	1.319e^-4	0.82	SYNONYMOUS_CODING CG1246 DOWNSTREAM Aats-pro
2R	20889947	2R_20889947_SNP [dm3] 2R_25002424_SNP [dm6]	A	G	1.326e^-4	0.82	SYNONYMOUS_CODING zip
3R	16988899	3R_16988899_SNP [dm3] 3R_21163177_SNP [dm6]	T	A	1.331e^-4	0.82	UPSTREAM CG5810 INTRON SNF4Agamma
2R	12545372	2R_12545372_SNP [dm3] 2R_16657867_SNP [dm6]	T	A	1.333e^-4	0.82	INTRON Picot
2L	11456119	2L_11456119_SNP [dm3] 2L_11456119_SNP [dm6]	T	C	1.337e^-4	0.82	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	4015838	2L_4015838_SNP [dm3] 2L_4015838_SNP [dm6]	C	T	1.349e^-4	0.82	INTERGENIC
2L	19239472	2L_19239472_SNP [dm3] 2L_19239472_SNP [dm6]	C	T	1.349e^-4	0.82	INTERGENIC
2L	21906167	2L_21906167_SNP [dm3] 2L_21906167_SNP [dm6]	A	T	1.362e^-4	0.82	UPSTREAM CG1428 INTERGENIC
2R	20024266	2R_20024266_SNP [dm3] 2R_24136743_SNP [dm6]	T	G	1.366e^-4	0.82	INTRON CG4065	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12112020	2L_12112020_SNP [dm3] 2L_12112020_SNP [dm6]	A	G	1.371e^-4	0.82	UTR_3_PRIME Phae2 DOWNSTREAM Phae2	TF binding site mE1_TFBS_cad
3L	1646321	3L_1646321_SNP [dm3] 3L_1646321_SNP [dm6]	G	T	1.375e^-4	0.82	SYNONYMOUS_CODING CG17249 DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4898555	2L_4898555_SNP [dm3] 2L_4898555_SNP [dm6]	C	A	1.378e^-4	0.82	INTRON CG3036
2R	11251263	2R_11251263_SNP [dm3] 2R_15363758_SNP [dm6]	T	A	1.382e^-4	0.82	INTRON unc-5
X	13851882	X_13851882_SNP [dm3] X_13957849_SNP [dm6]	C	T	1.383e^-4	0.82	INTRON mamo
2L	19239692	2L_19239692_INS [dm3] 2L_19239692_INS [dm6]	T	TGCTTGT	1.386e^-4	0.82	INTERGENIC
3L	7875188	3L_7875188_SNP [dm3] 3L_7882088_SNP [dm6]	A	T	1.391e^-4	0.82	INTRON CG32365
2L	683994	2L_683994_SNP [dm3] 2L_683994_SNP [dm6]	G	A	1.394e^-4	0.82	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12021505	X_12021505_SNP [dm3] X_12127472_SNP [dm6]	T	A	1.402e^-4	0.82	UPSTREAM Ten-a INTRON Ten-a
3R	10940970	3R_10940970_SNP [dm3] 3R_15115248_SNP [dm6]	G	T	1.422e^-4	0.82	INTRON CG42788
3L	1648273	3L_1648273_SNP [dm3] 3L_1648273_SNP [dm6]	G	T	1.426e^-4	0.82	SYNONYMOUS_CODING Bro UPSTREAM CG17249 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	11010499	2L_11010499_SNP [dm3] 2L_11010499_SNP [dm6]	C	T	1.431e^-4	0.82	SYNONYMOUS_CODING Art8 UTR_3_PRIME Nup154 UPSTREAM dUTPase DOWNSTREAM Nup154	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	5810800	2R_5810800_SNP [dm3] 2R_9923295_SNP [dm6]	G	C	1.434e^-4	0.82	INTRON Mef2
3R	17541473	3R_17541473_SNP [dm3] 3R_21715751_SNP [dm6]	G	T	1.435e^-4	0.82	INTRON CG31176
2R	17693886	2R_17693886_SNP [dm3] 2R_21806381_SNP [dm6]	T	C	1.436e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	7047522	2L_7047522_SNP [dm3] 2L_7047522_SNP [dm6]	G	T	1.440e^-4	0.82	INTRON milt
X	3559908	X_3559908_SNP [dm3] X_3665875_SNP [dm6]	T	A	1.441e^-4	0.82	UTR_3_PRIME AstA-R1
3L	1646490	3L_1646490_SNP [dm3] 3L_1646490_SNP [dm6]	T	G	1.441e^-4	0.82	NON_SYNONYMOUS_CODING CG17249 DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	4266695	3R_4266695_SNP [dm3] 3R_8440973_SNP [dm6]	G	A	1.449e^-4	0.82	INTRON CG45263
3R	10573381	3R_10573381_SNP [dm3] 3R_14747659_SNP [dm6]	T	A	1.458e^-4	0.82	UPSTREAM smp-30 INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
X	14539236	X_14539236_INS [dm3] X_14645203_INS [dm6]	A	ATACA	1.462e^-4	0.82	INTRON NetA
3R	4266799	3R_4266799_SNP [dm3] 3R_8441077_SNP [dm6]	G	T	1.466e^-4	0.82	INTRON CG45263
3R	15039449	3R_15039449_SNP [dm3] 3R_19213727_SNP [dm6]	A	G	1.469e^-4	0.82	NON_SYNONYMOUS_CODING cry
2R	14083752	2R_14083752_SNP [dm3] 2R_18196247_SNP [dm6]	G	A	1.470e^-4	0.82	INTERGENIC
3R	25496338	3R_25496338_SNP [dm3] 3R_29670616_SNP [dm6]	T	A	1.470e^-4	0.82	SYNONYMOUS_CODING ppk30	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12294007	2L_12294007_SNP [dm3] 2L_12294007_SNP [dm6]	A	C	1.476e^-4	0.82	INTRON aret
3R	7347881	3R_7347881_SNP [dm3] 3R_11522159_SNP [dm6]	C	T	1.480e^-4	0.82	INTERGENIC
2R	18982670	2R_18982670_SNP [dm3] 2R_23095147_SNP [dm6]	C	A	1.481e^-4	0.82	UPSTREAM CG9876 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	20024436	2R_20024436_SNP [dm3] 2R_24136913_SNP [dm6]	G	A	1.489e^-4	0.82	SYNONYMOUS_CODING CG4065	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10001303	2R_10001303_SNP [dm3] 2R_14113798_SNP [dm6]	G	C	1.490e^-4	0.82	INTRON Prosap	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	683988	2L_683988_SNP [dm3] 2L_683988_SNP [dm6]	G	T	1.492e^-4	0.82	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	683989	2L_683989_SNP [dm3] 2L_683989_SNP [dm6]	T	A	1.492e^-4	0.82	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2649565	3L_2649565_SNP [dm3] 3L_2649565_SNP [dm6]	A	G	1.510e^-4	0.82	SYNONYMOUS_CODING CG1246 DOWNSTREAM Aats-pro
2L	21879086	2L_21879086_SNP [dm3] 2L_21879086_SNP [dm6]	C	G	1.529e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11442116	2L_11442116_SNP [dm3] 2L_11442116_SNP [dm6]	A	G	1.542e^-4	0.82	INTRON salm	TF binding site mE1_TFBS_inv
3R	10950677	3R_10950677_SNP [dm3] 3R_15124955_SNP [dm6]	A	G	1.550e^-4	0.82	INTRON CG42788
3L	13548981	3L_13548981_SNP [dm3] 3L_13555881_SNP [dm6]	T	C	1.551e^-4	0.82	INTRON bru-3
2R	3029908	2R_3029908_SNP [dm3] 2R_7142403_SNP [dm6]	A	C	1.568e^-4	0.82	INTERGENIC
3R	9409835	3R_9409835_SNP [dm3] 3R_13584113_SNP [dm6]	T	A	1.576e^-4	0.82	INTERGENIC
3L	7484492	3L_7484492_SNP [dm3] 3L_7491392_SNP [dm6]	G	T	1.577e^-4	0.82	UPSTREAM Cyp316a1 INTERGENIC
3R	16294728	3R_16294728_SNP [dm3] 3R_20469006_SNP [dm6]	C	T	1.578e^-4	0.82	INTRON Gfrl
3L	10842862	3L_10842862_SNP [dm3] 3L_10849762_SNP [dm6]	T	C	1.590e^-4	0.82	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	22020649	2L_22020649_SNP [dm3] 2L_22020649_SNP [dm6]	T	G	1.592e^-4	0.82	DOWNSTREAM CR33987 INTRON tio	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24121095	3R_24121095_SNP [dm3] 3R_28295373_SNP [dm6]	G	C	1.593e^-4	0.82	UPSTREAM CR44229 DOWNSTREAM CG17856 INTERGENIC
3L	7138315	3L_7138315_SNP [dm3] 3L_7145215_SNP [dm6]	G	A	1.593e^-4	0.82	INTRON corn
3R	7278093	3R_7278093_SNP [dm3] 3R_11452371_SNP [dm6]	C	T	1.594e^-4	0.82	UPSTREAM sals DOWNSTREAM PGRP-LB INTRON CG17230
3R	16385653	3R_16385653_SNP [dm3] 3R_20559931_SNP [dm6]	C	T	1.595e^-4	0.82	SYNONYMOUS_CODING CG15922 UPSTREAM CG5191 DOWNSTREAM CG5180	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11348528	2R_11348528_SNP [dm3] 2R_15461023_SNP [dm6]	C	G	1.599e^-4	0.82	NON_SYNONYMOUS_CODING CG43729 INTRON CG43729
3L	2649575	3L_2649575_SNP [dm3] 3L_2649575_SNP [dm6]	A	G	1.601e^-4	0.82	NON_SYNONYMOUS_CODING CG1246 DOWNSTREAM Aats-pro
2R	19440400	2R_19440400_INS [dm3] 2R_23552877_INS [dm6]	T	TGAT	1.602e^-4	0.82	INTRON pita & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	20022612	2R_20022612_SNP [dm3] 2R_24135089_SNP [dm6]	T	C	1.603e^-4	0.82	SYNONYMOUS_CODING Zfrp8 DOWNSTREAM CG4065
2L	6100997	2L_6100997_SNP [dm3] 2L_6100997_SNP [dm6]	A	T	1.605e^-4	0.82	INTRON stai	TF binding site BDTNP1_TFBS_dl
3R	21488226	3R_21488226_SNP [dm3] 3R_25662504_SNP [dm6]	G	C	1.609e^-4	0.82	INTRON RASSF8 EXON CR45208	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2428866	3L_2428866_SNP [dm3] 3L_2428866_SNP [dm6]	G	A	1.614e^-4	0.82	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	16801472	X_16801472_SNP [dm3] X_16907439_SNP [dm6]	C	T	1.615e^-4	0.82	INTRON CR44754
2L	5229924	2L_5229924_SNP [dm3] 2L_5229924_SNP [dm6]	C	T	1.616e^-4	0.82	INTRON tkv
X	16801467	X_16801467_SNP [dm3] X_16907434_SNP [dm6]	T	A	1.617e^-4	0.82	INTRON CR44754
3R	19039875	3R_19039875_SNP [dm3] 3R_23214153_SNP [dm6]	A	G	1.618e^-4	0.82	INTRON cnc	TF binding site BDTNP1_TFBS_dl
X	18645729	X_18645729_SNP [dm3] X_18751696_SNP [dm6]	T	A	1.629e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12139251	X_12139251_SNP [dm3] X_12245218_SNP [dm6]	C	T	1.641e^-4	0.82	INTRON Ten-a
3R	13138620	3R_13138620_SNP [dm3] 3R_17312898_SNP [dm6]	G	A	1.642e^-4	0.82	INTERGENIC
3R	1545051	3R_1545051_SNP [dm3] 3R_5719329_SNP [dm6]	G	T	1.644e^-4	0.82	INTERGENIC	regulatory region REDfly_CRMs
3R	8587669	3R_8587669_SNP [dm3] 3R_12761947_SNP [dm6]	G	C	1.650e^-4	0.82	INTRON beat-Vc
2L	10226964	2L_10226964_SNP [dm3] 2L_10226964_SNP [dm6]	C	A	1.655e^-4	0.82	UPSTREAM CG5708 DOWNSTREAM CG5694 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	2650818	3L_2650818_SNP [dm3] 3L_2650818_SNP [dm6]	A	G	1.658e^-4	0.82	SYNONYMOUS_CODING Aats-pro UTR_3_PRIME Aats-pro DOWNSTREAM CG1246
2L	6320874	2L_6320874_SNP [dm3] 2L_6320874_SNP [dm6]	A	G	1.664e^-4	0.82	INTRON Ddr
2L	7515599	2L_7515599_SNP [dm3] 2L_7515599_SNP [dm6]	T	A	1.671e^-4	0.82	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da
3R	8478911	3R_8478911_SNP [dm3] 3R_12653189_SNP [dm6]	G	A	1.680e^-4	0.82	DOWNSTREAM Dtg INTERGENIC
3R	16385635	3R_16385635_SNP [dm3] 3R_20559913_SNP [dm6]	C	T	1.688e^-4	0.82	SYNONYMOUS_CODING CG15922 UPSTREAM CG5191 DOWNSTREAM CG5180	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12544954	2R_12544954_SNP [dm3] 2R_16657449_SNP [dm6]	G	C	1.689e^-4	0.82	INTRON Picot
X	15281434	X_15281434_SNP [dm3] X_15387401_SNP [dm6]	A	G	1.689e^-4	0.82	UTR_3_PRIME Cngl
2R	9163395	2R_9163395_SNP [dm3] 2R_13275890_SNP [dm6]	G	A	1.691e^-4	0.82	INTRON Dh31-R
3L	8870026	3L_8870026_SNP [dm3] 3L_8876926_SNP [dm6]	A	G	1.707e^-4	0.82	INTRON dally
2L	8782974	2L_8782974_SNP [dm3] 2L_8782974_SNP [dm6]	G	A	1.710e^-4	0.82	UPSTREAM CG42710 INTERGENIC
3R	14616483	3R_14616483_SNP [dm3] 3R_18790761_SNP [dm6]	T	C	1.716e^-4	0.82	INTRON CG7720
2R	18993657	2R_18993657_SNP [dm3] 2R_23106134_SNP [dm6]	T	C	1.716e^-4	0.82	UPSTREAM Gr59d INTERGENIC
X	234927	X_234927_SNP [dm3] X_340894_SNP [dm6]	C	A	1.719e^-4	0.82	INTRON CG3777 & 1 other
2L	21968495	2L_21968495_SNP [dm3] 2L_21968495_SNP [dm6]	G	T	1.727e^-4	0.82	INTERGENIC
2R	18063875	2R_18063875_SNP [dm3] 2R_22176370_SNP [dm6]	G	A	1.730e^-4	0.82	SYNONYMOUS_CODING CG6758 EXON CR45151	TF binding site mE1_TFBS_chinmo
X	253418	X_253418_SNP [dm3] X_359385_SNP [dm6]	G	A	1.737e^-4	0.82	INTRON CG32816 & 1 other	regulatory region REDfly_CRMs
3R	14776504	3R_14776504_SNP [dm3] 3R_18950782_SNP [dm6]	C	T	1.740e^-4	0.82	INTRON CG42613 & 1 other
2L	22025869	2L_22025869_SNP [dm3] 2L_22025869_SNP [dm6]	C	T	1.746e^-4	0.82	DOWNSTREAM tio INTERGENIC
2R	19964130	2R_19964130_SNP [dm3] 2R_24076607_SNP [dm6]	T	C	1.748e^-4	0.82	SPLICE_SITE_REGION Mlp60A DOWNSTREAM Mlp60A INTRON Mlp60A	TF binding site mE1_TFBS_cad
2L	7456208	2L_7456208_SNP [dm3] 2L_7456208_SNP [dm6]	G	C	1.748e^-4	0.82	SYNONYMOUS_CODING Gr28b INTRON Gr28b	TF binding site mE1_TFBS_HSA
2L	10226967	2L_10226967_SNP [dm3] 2L_10226967_SNP [dm6]	A	G	1.753e^-4	0.82	UPSTREAM CG5708 DOWNSTREAM CG5694 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	6023720	3L_6023720_INS [dm3] 3L_6030620_INS [dm6]	TG	GAAGGA	1.756e^-4	0.82	INTERGENIC
3R	9409833	3R_9409833_INS [dm3] 3R_13584111_INS [dm6]	A	AC	1.767e^-4	0.82	INTERGENIC
2L	16635327	2L_16635327_INS [dm3] 2L_16635327_INS [dm6]	T	TAG	1.768e^-4	0.82	INTRON CG42389
X	3559838	X_3559838_SNP [dm3] X_3665805_SNP [dm6]	A	T	1.769e^-4	0.82	UTR_3_PRIME AstA-R1
3R	13132160	3R_13132160_SNP [dm3] 3R_17306438_SNP [dm6]	G	A	1.775e^-4	0.82	INTERGENIC
3L	6735735	3L_6735735_SNP [dm3] 3L_6742635_SNP [dm6]	G	T	1.778e^-4	0.82	INTRON dikar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	16635322	2L_16635322_DEL [dm3] 2L_16635322_DEL [dm6]	GC	G	1.778e^-4	0.82	INTRON CG42389
3L	8637382	3L_8637382_SNP [dm3] 3L_8644282_SNP [dm6]	T	A	1.785e^-4	0.82	DOWNSTREAM Cpr66D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14030411	3R_14030411_SNP [dm3] 3R_18204689_SNP [dm6]	G	A	1.786e^-4	0.82	INTRON CG7985
3R	1248477	3R_1248477_SNP [dm3] 3R_5422755_SNP [dm6]	C	G	1.786e^-4	0.82	INTRON CG14669
2L	2886658	2L_2886658_DEL [dm3] 2L_2886658_DEL [dm6]	TTT	T	1.789e^-4	0.82	UPSTREAM NTPase INTRON lilli	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl mE1_TFBS_zfh1
2L	11226434	2L_11226434_SNP [dm3] 2L_11226434_SNP [dm6]	G	A	1.798e^-4	0.82	INTRON ab
X	18645723	X_18645723_SNP [dm3] X_18751690_SNP [dm6]	A	G	1.801e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13994405	2R_13994405_SNP [dm3] 2R_18106900_SNP [dm6]	G	A	1.805e^-4	0.82	INTRON CG5756
3L	6690498	3L_6690498_SNP [dm3] 3L_6697398_SNP [dm6]	G	A	1.807e^-4	0.82	INTRON SP1173
2R	11348742	2R_11348742_SNP [dm3] 2R_15461237_SNP [dm6]	C	A	1.808e^-4	0.82	INTRON CG43729	TF binding site mE1_TFBS_HSA
2R	15394540	2R_15394540_SNP [dm3] 2R_19507035_SNP [dm6]	G	T	1.811e^-4	0.82	UPSTREAM tRNA:H:56E INTERGENIC
3R	22653620	3R_22653620_SNP [dm3] 3R_26827898_SNP [dm6]	G	A	1.813e^-4	0.82	INTRON Tl
X	18645744	X_18645744_SNP [dm3] X_18751711_SNP [dm6]	G	A	1.819e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12998721	2R_12998721_SNP [dm3] 2R_17111216_SNP [dm6]	G	A	1.821e^-4	0.82	INTRON CG15611	TF binding site mE1_TFBS_inv
2R	10578635	2R_10578635_SNP [dm3] 2R_14691130_SNP [dm6]	T	C	1.829e^-4	0.82	INTRON mspo
2R	19453306	2R_19453306_SNP [dm3] 2R_23565783_SNP [dm6]	A	G	1.855e^-4	0.82	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	19239618	2L_19239618_SNP [dm3] 2L_19239618_SNP [dm6]	A	G	1.855e^-4	0.82	INTERGENIC
3R	19535795	3R_19535795_SNP [dm3] 3R_23710073_SNP [dm6]	G	T	1.862e^-4	0.82	UPSTREAM CG10301 INTERGENIC
3R	13197931	3R_13197931_SNP [dm3] 3R_17372209_SNP [dm6]	C	G	1.865e^-4	0.82	UPSTREAM CR44256 INTERGENIC
X	9704731	X_9704731_SNP [dm3] X_9810698_SNP [dm6]	C	A	1.872e^-4	0.82	INTRON CG32698
2L	21763435	2L_21763435_SNP [dm3] 2L_21763435_SNP [dm6]	A	T	1.883e^-4	0.82	INTRON CG31612
3L	9215685	3L_9215685_SNP [dm3] 3L_9222585_SNP [dm6]	G	A	1.888e^-4	0.82	DOWNSTREAM CR45408 INTERGENIC
2R	20345617	2R_20345617_SNP [dm3] 2R_24458094_SNP [dm6]	G	T	1.888e^-4	0.82	INTRON CG13579
2L	12698499	2L_12698499_SNP [dm3] 2L_12698499_SNP [dm6]	C	T	1.900e^-4	0.82	NON_SYNONYMOUS_CODING PICK1 DOWNSTREAM CG17036	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18763069	3R_18763069_SNP [dm3] 3R_22937347_SNP [dm6]	T	A	1.904e^-4	0.82	INTRON klg
X	14470660	X_14470660_SNP [dm3] X_14576627_SNP [dm6]	T	C	1.907e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2899376	2L_2899376_SNP [dm3] 2L_2899376_SNP [dm6]	G	T	1.907e^-4	0.82	INTRON lilli	TF binding site mE1_TFBS_Trl
2L	21970323	2L_21970323_SNP [dm3] 2L_21970323_SNP [dm6]	C	T	1.911e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	21979570	2L_21979570_SNP [dm3] 2L_21979570_SNP [dm6]	T	A	1.918e^-4	0.82	INTERGENIC
3R	7282901	3R_7282901_SNP [dm3] 3R_11457179_SNP [dm6]	T	C	1.922e^-4	0.82	INTRON CG17230 & 1 other
2R	12154868	2R_12154868_SNP [dm3] 2R_16267363_SNP [dm6]	G	T	1.925e^-4	0.82	SYNONYMOUS_CODING Khc DOWNSTREAM csul	TF binding site mE1_TFBS_chinmo
2L	19239639	2L_19239639_SNP [dm3] 2L_19239639_SNP [dm6]	T	C	1.929e^-4	0.82	INTERGENIC
3R	7320038	3R_7320038_SNP [dm3] 3R_11494316_SNP [dm6]	T	C	1.938e^-4	0.82	INTERGENIC
3R	15024658	3R_15024658_SNP [dm3] 3R_19198936_SNP [dm6]	A	C	1.943e^-4	0.82	INTRON CG31475
3R	16989117	3R_16989117_SNP [dm3] 3R_21163395_SNP [dm6]	A	T	1.945e^-4	0.82	UPSTREAM CG5810 INTRON SNF4Agamma
X	19871664	X_19871664_SNP [dm3] X_19977631_SNP [dm6]	C	G	1.948e^-4	0.82	INTERGENIC
X	18397487	X_18397487_INS [dm3] X_18503454_INS [dm6]	T	TGCTACT	1.952e^-4	0.82	CODON_INSERTION Wnt5	TF binding site mE1_TFBS_cad
3L	2113702	3L_2113702_SNP [dm3] 3L_2113702_SNP [dm6]	A	C	1.954e^-4	0.82	INTRON sls
3L	14142384	3L_14142384_SNP [dm3] 3L_14149284_SNP [dm6]	T	A	1.956e^-4	0.82	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	13549841	3L_13549841_SNP [dm3] 3L_13556741_SNP [dm6]	A	G	1.958e^-4	0.82	INTRON bru-3
2L	21914320	2L_21914320_SNP [dm3] 2L_21914320_SNP [dm6]	T	C	1.959e^-4	0.82	UTR_3_PRIME CG31600
2R	12545025	2R_12545025_INS [dm3] 2R_16657520_INS [dm6]	T	TATTTCACTAAATCTGTAAA...	1.960e^-4	0.82	INTRON Picot
3L	12486748	3L_12486748_DEL [dm3] 3L_12493648_DEL [dm6]	AA	A	1.961e^-4	0.82	DOWNSTREAM CR45682 INTRON CG10657
3R	17666757	3R_17666757_SNP [dm3] 3R_21841035_SNP [dm6]	A	C	1.964e^-4	0.82	INTERGENIC
3L	1306962	3L_1306962_SNP [dm3] 3L_1306962_SNP [dm6]	T	C	1.967e^-4	0.82	SYNONYMOUS_CODING CG2277 UPSTREAM CG2469	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12110914	2L_12110914_SNP [dm3] 2L_12110914_SNP [dm6]	T	C	1.968e^-4	0.82	UPSTREAM Phae2 DOWNSTREAM Phae1 INTERGENIC
2L	2899341	2L_2899341_SNP [dm3] 2L_2899341_SNP [dm6]	A	G	1.972e^-4	0.82	INTRON lilli	TF binding site mE1_TFBS_Trl
3L	5523493	3L_5523493_SNP [dm3] 3L_5530393_SNP [dm6]	C	T	1.976e^-4	0.82	INTERGENIC
3L	11434535	3L_11434535_SNP [dm3] 3L_11441435_SNP [dm6]	A	T	1.981e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	9623550	2L_9623550_SNP [dm3] 2L_9623550_SNP [dm6]	T	C	1.987e^-4	0.82	DOWNSTREAM GlcAT-S & 1 other INTERGENIC
X	9499442	X_9499442_SNP [dm3] X_9605409_SNP [dm6]	C	T	1.988e^-4	0.82	SYNONYMOUS_CODING Lst8 DOWNSTREAM Aats-lys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	3884505	2R_3884505_SNP [dm3] 2R_7997000_SNP [dm6]	T	G	1.992e^-4	0.82	INTRON Hey
2L	1982443	2L_1982443_SNP [dm3] 2L_1982443_SNP [dm6]	C	T	1.993e^-4	0.82	SYNONYMOUS_CODING CG7289 DOWNSTREAM CG15362	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	18261891	2R_18261891_SNP [dm3] 2R_22374386_SNP [dm6]	C	A	2.017e^-4	0.82	UPSTREAM Rtf1 INTRON CR44759	TF binding site BDTNP1_TFBS_dl
3R	14691693	3R_14691693_SNP [dm3] 3R_18865971_SNP [dm6]	A	G	2.017e^-4	0.82	INTERGENIC
2L	15141159	2L_15141159_SNP [dm3] 2L_15141159_SNP [dm6]	T	C	2.026e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	12035632	3R_12035632_SNP [dm3] 3R_16209910_SNP [dm6]	G	A	2.032e^-4	0.82	UPSTREAM CR45639 & 1 other DOWNSTREAM CR45640 & 1 other INTERGENIC
2L	2887981	2L_2887981_SNP [dm3] 2L_2887981_SNP [dm6]	A	G	2.032e^-4	0.82	UPSTREAM lilli INTRON lilli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
X	8430978	X_8430978_SNP [dm3] X_8536945_SNP [dm6]	T	C	2.036e^-4	0.82	INTRON Nrg
3L	4053630	3L_4053630_SNP [dm3] 3L_4053630_SNP [dm6]	T	C	2.052e^-4	0.82	INTRON CG1136
X	4205190	X_4205190_SNP [dm3] X_4311157_SNP [dm6]	A	G	2.053e^-4	0.82	DOWNSTREAM CG15579 & 1 other INTERGENIC
2L	2899331	2L_2899331_SNP [dm3] 2L_2899331_SNP [dm6]	C	G	2.055e^-4	0.82	INTRON lilli
2L	15149855	2L_15149855_SNP [dm3] 2L_15149855_SNP [dm6]	T	A	2.060e^-4	0.82	INTERGENIC
2L	1982408	2L_1982408_SNP [dm3] 2L_1982408_SNP [dm6]	T	C	2.061e^-4	0.82	SYNONYMOUS_CODING CG7289 DOWNSTREAM CG15362	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	8716114	3R_8716114_DEL [dm3] 3R_12890392_DEL [dm6]	TT	T	2.061e^-4	0.82	INTERGENIC
3L	22843460	3L_22843460_SNP [dm3] 3L_22850360_SNP [dm6]	C	T	2.069e^-4	0.82	EXON CR43426	TF binding site BDTNP1_TFBS_twi
2L	7525471	2L_7525471_SNP [dm3] 2L_7525471_SNP [dm6]	C	A	2.082e^-4	0.82	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20356076	2R_20356076_SNP [dm3] 2R_24468553_SNP [dm6]	T	A	2.083e^-4	0.82	INTRON CG13579
2R	15006292	2R_15006292_SNP [dm3] 2R_19118787_SNP [dm6]	G	A	2.086e^-4	0.82	SYNONYMOUS_CODING 5-HT1A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1315130	3L_1315130_SNP [dm3] 3L_1315130_SNP [dm6]	C	A	2.087e^-4	0.82	SYNONYMOUS_CODING CG9153	TF binding site mE1_TFBS_cad
3L	16745156	3L_16745156_SNP [dm3] 3L_16752056_SNP [dm6]	T	C	2.096e^-4	0.82	INTERGENIC
2L	17603204	2L_17603204_SNP [dm3] 2L_17603204_SNP [dm6]	T	C	2.097e^-4	0.82	SYNONYMOUS_CODING Sytalpha	TF binding site mE1_TFBS_bab1
2L	7937633	2L_7937633_SNP [dm3] 2L_7937633_SNP [dm6]	G	C	2.098e^-4	0.82	INTRON Snoo
2L	6100998	2L_6100998_INS [dm3] 2L_6100998_INS [dm6]	T	TATG	2.099e^-4	0.82	INTRON stai	TF binding site BDTNP1_TFBS_dl
3L	5885965	3L_5885965_SNP [dm3] 3L_5892865_SNP [dm6]	T	C	2.100e^-4	0.82	INTERGENIC
2L	12324057	2L_12324057_SNP [dm3] 2L_12324057_SNP [dm6]	T	C	2.101e^-4	0.82	INTERGENIC
2L	7937550	2L_7937550_SNP [dm3] 2L_7937550_SNP [dm6]	A	G	2.105e^-4	0.82	INTRON Snoo
2L	2887330	2L_2887330_SNP [dm3] 2L_2887330_SNP [dm6]	A	T	2.110e^-4	0.82	UPSTREAM lilli INTRON lilli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
3R	4823138	3R_4823138_DEL [dm3] 3R_8997416_DEL [dm6]	ACAATTGACATAAACAAACT...	A	2.111e^-4	0.82	UPSTREAM CG11977 INTRON CG31100
3R	18763037	3R_18763037_INS [dm3] 3R_22937315_INS [dm6]	T	TAG	2.112e^-4	0.82	INTRON klg
3L	7893963	3L_7893963_SNP [dm3] 3L_7900863_SNP [dm6]	C	T	2.121e^-4	0.82	SYNONYMOUS_CODING pbl INTRON pbl
2R	15669170	2R_15669170_SNP [dm3] 2R_19781665_SNP [dm6]	G	A	2.124e^-4	0.82	INTERGENIC
2R	13803201	2R_13803201_SNP [dm3] 2R_17915696_SNP [dm6]	A	T	2.126e^-4	0.82	INTRON Elk
2L	21898854	2L_21898854_SNP [dm3] 2L_21898854_SNP [dm6]	G	T	2.130e^-4	0.82	UPSTREAM CG11629 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	15137680	2L_15137680_SNP [dm3] 2L_15137680_SNP [dm6]	A	G	2.131e^-4	0.82	INTERGENIC
3L	13548982	3L_13548982_SNP [dm3] 3L_13555882_SNP [dm6]	T	C	2.136e^-4	0.82	INTRON bru-3
3L	1561196	3L_1561196_SNP [dm3] 3L_1561196_SNP [dm6]	G	T	2.140e^-4	0.82	NON_SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	3266110	3L_3266110_SNP [dm3] 3L_3266110_SNP [dm6]	T	C	2.145e^-4	0.82	INTRON ckd	TF binding site BDTNP1_TFBS_dl
3R	11857068	3R_11857068_SNP [dm3] 3R_16031346_SNP [dm6]	T	G	2.147e^-4	0.82	INTRON pnr
3L	7949509	3L_7949509_SNP [dm3] 3L_7956409_SNP [dm6]	A	C	2.150e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	11805015	X_11805015_SNP [dm3] X_11910982_SNP [dm6]	T	C	2.155e^-4	0.82	SYNONYMOUS_CODING pot	TF binding site mE1_TFBS_chinmo
3R	11857592	3R_11857592_SNP [dm3] 3R_16031870_SNP [dm6]	A	T	2.158e^-4	0.82	INTRON pnr
3R	10950652	3R_10950652_INS [dm3] 3R_15124930_INS [dm6]	A	AAA	2.168e^-4	0.82	INTRON CG42788
2L	19239653	2L_19239653_SNP [dm3] 2L_19239653_SNP [dm6]	C	T	2.169e^-4	0.82	INTERGENIC
3L	10860648	3L_10860648_SNP [dm3] 3L_10867548_SNP [dm6]	C	A	2.173e^-4	0.82	INTRON tna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	14539256	X_14539256_SNP [dm3] X_14645223_SNP [dm6]	T	C	2.178e^-4	0.82	INTRON NetA
2L	12293940	2L_12293940_SNP [dm3] 2L_12293940_SNP [dm6]	A	C	2.188e^-4	0.82	INTRON aret
X	255834	X_255834_SNP [dm3] X_361801_SNP [dm6]	C	T	2.198e^-4	0.82	UPSTREAM yar DOWNSTREAM y INTRON CG32816	regulatory region REDfly_CRMs
3R	13570452	3R_13570452_SNP [dm3] 3R_17744730_SNP [dm6]	C	T	2.204e^-4	0.82	INTRON TyrRII
2L	21916487	2L_21916487_SNP [dm3] 2L_21916487_SNP [dm6]	T	A	2.207e^-4	0.82	NON_SYNONYMOUS_CODING CG11634
3R	26704738	3R_26704738_SNP [dm3] 3R_30879016_SNP [dm6]	C	T	2.208e^-4	0.82	SYNONYMOUS_CODING CG12071	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9703161	3L_9703161_SNP [dm3] 3L_9710061_SNP [dm6]	C	T	2.210e^-4	0.82	UTR_3_PRIME CG16711 DOWNSTREAM SH3PX1 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	16840396	2L_16840396_SNP [dm3] 2L_16840396_SNP [dm6]	T	C	2.210e^-4	0.82	UTR_3_PRIME SclA & 1 other INTRON SclA
2R	17625813	2R_17625813_SNP [dm3] 2R_21738308_SNP [dm6]	G	T	2.214e^-4	0.82	INTERGENIC
2R	7102554	2R_7102554_SNP [dm3] 2R_11215049_SNP [dm6]	T	A	2.217e^-4	0.82	NON_SYNONYMOUS_CODING shn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	6505374	2L_6505374_SNP [dm3] 2L_6505374_SNP [dm6]	T	C	2.220e^-4	0.82	INTRON CG31637
3L	3944697	3L_3944697_INS [dm3] 3L_3944697_INS [dm6]	A	TG	2.221e^-4	0.82	INTRON CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
3L	8549937	3L_8549937_SNP [dm3] 3L_8556837_SNP [dm6]	C	T	2.223e^-4	0.82	INTRON rhea	TF binding site BDTNP1_TFBS_dl
X	14358189	X_14358189_SNP [dm3] X_14464156_SNP [dm6]	A	G	2.225e^-4	0.82	INTERGENIC
X	17711950	X_17711950_SNP [dm3] X_17817917_SNP [dm6]	A	T	2.227e^-4	0.82	INTERGENIC
3R	7280971	3R_7280971_SNP [dm3] 3R_11455249_SNP [dm6]	G	C	2.227e^-4	0.82	UPSTREAM PGRP-LB INTRON CG17230 & 1 other	TF binding site mE1_TFBS_inv
3R	6344146	3R_6344146_SNP [dm3] 3R_10518424_SNP [dm6]	T	G	2.232e^-4	0.82	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13807055	2R_13807055_SNP [dm3] 2R_17919550_SNP [dm6]	G	A	2.233e^-4	0.82	INTRON Elk
3L	11434533	3L_11434533_SNP [dm3] 3L_11441433_SNP [dm6]	G	C	2.233e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	26105794	3R_26105794_SNP [dm3] 3R_30280072_SNP [dm6]	C	T	2.235e^-4	0.82	SYNONYMOUS_CODING hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1086478	3L_1086478_SNP [dm3] 3L_1086478_SNP [dm6]	C	T	2.236e^-4	0.82	INTRON bab1
3L	718775	3L_718775_SNP [dm3] 3L_718775_SNP [dm6]	A	T	2.242e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13803200	2R_13803200_SNP [dm3] 2R_17915695_SNP [dm6]	T	A	2.250e^-4	0.82	INTRON Elk
X	4602729	X_4602729_SNP [dm3] X_4708696_SNP [dm6]	A	T	2.255e^-4	0.82	UPSTREAM Proc-R INTRON Proc-R
3L	1638953	3L_1638953_SNP [dm3] 3L_1638953_SNP [dm6]	G	A	2.257e^-4	0.82	SYNONYMOUS_CODING metl UPSTREAM Bgb INTRON metl	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	9942004	2L_9942004_SNP [dm3] 2L_9942004_SNP [dm6]	C	A	2.259e^-4	0.82	SYNONYMOUS_CODING CG5853 UTR_3_PRIME CG4619	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19625266	3R_19625266_SNP [dm3] 3R_23799544_SNP [dm6]	T	C	2.262e^-4	0.82	INTRON mbc
2L	22020566	2L_22020566_SNP [dm3] 2L_22020566_SNP [dm6]	A	G	2.263e^-4	0.82	DOWNSTREAM CR33987 INTRON tio
X	246106	X_246106_SNP [dm3] X_352073_SNP [dm6]	G	A	2.266e^-4	0.82	UPSTREAM CG43182 DOWNSTREAM CG43181 INTRON CG32816
2L	11074058	2L_11074058_SNP [dm3] 2L_11074058_SNP [dm6]	C	T	2.271e^-4	0.82	DOWNSTREAM CR45725 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	19239630	2L_19239630_DEL [dm3] 2L_19239630_DEL [dm6]	TATTT	T	2.291e^-4	0.82	INTERGENIC
3R	14616573	3R_14616573_SNP [dm3] 3R_18790851_SNP [dm6]	C	A	2.291e^-4	0.82	INTRON CG7720
2L	21879829	2L_21879829_SNP [dm3] 2L_21879829_SNP [dm6]	T	A	2.293e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	19239650	2L_19239650_INS [dm3] 2L_19239650_INS [dm6]	T	TCGTTGTATATACGTAGATT...	2.293e^-4	0.82	INTERGENIC
2R	10654646	2R_10654646_SNP [dm3] 2R_14767141_SNP [dm6]	G	C	2.297e^-4	0.82	INTRON Spred
3R	12589087	3R_12589087_DEL [dm3] 3R_16763365_DEL [dm6]	TT	T	2.300e^-4	0.82	DOWNSTREAM tre-3 & 1 other INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	1249354	3R_1249354_SNP [dm3] 3R_5423632_SNP [dm6]	C	A	2.303e^-4	0.82	INTRON CG14669
3R	16295311	3R_16295311_SNP [dm3] 3R_20469589_SNP [dm6]	T	A	2.307e^-4	0.82	INTRON Gfrl
3L	7138322	3L_7138322_SNP [dm3] 3L_7145222_SNP [dm6]	A	G	2.312e^-4	0.82	INTRON corn
3R	4819377	3R_4819377_SNP [dm3] 3R_8993655_SNP [dm6]	C	T	2.320e^-4	0.82	UPSTREAM E_var_3-9 INTRON CG11975	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8447106	2R_8447106_SNP [dm3] 2R_12559601_SNP [dm6]	A	G	2.331e^-4	0.82	SYNONYMOUS_CODING fra
3L	1714888	3L_1714888_SNP [dm3] 3L_1714888_SNP [dm6]	C	T	2.331e^-4	0.82	SYNONYMOUS_CODING CG7991 DOWNSTREAM drpr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13549289	3L_13549289_SNP [dm3] 3L_13556189_SNP [dm6]	T	C	2.332e^-4	0.82	INTRON bru-3
3L	18151516	3L_18151516_SNP [dm3] 3L_18158416_SNP [dm6]	C	A	2.333e^-4	0.82	NON_SYNONYMOUS_CODING CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8914992	2R_8914992_SNP [dm3] 2R_13027487_SNP [dm6]	T	C	2.342e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	21763436	2L_21763436_SNP [dm3] 2L_21763436_SNP [dm6]	A	T	2.349e^-4	0.82	INTRON CG31612
X	6548015	X_6548015_SNP [dm3] X_6653982_SNP [dm6]	C	T	2.352e^-4	0.82	SYNONYMOUS_CODING CG3226 UPSTREAM l_1_G0148 DOWNSTREAM pigs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	12583094	3L_12583094_SNP [dm3] 3L_12589994_SNP [dm6]	C	T	2.355e^-4	0.82	INTRON ara	TF binding site BDTNP1_TFBS_twi
2L	21961134	2L_21961134_SNP [dm3] 2L_21961134_SNP [dm6]	T	C	2.358e^-4	0.82	INTERGENIC
3R	1324646	3R_1324646_SNP [dm3] 3R_5498924_SNP [dm6]	C	A	2.359e^-4	0.82	INTRON CG31547
3L	9399390	3L_9399390_SNP [dm3] 3L_9406290_SNP [dm6]	A	C	2.367e^-4	0.82	UTR_3_PRIME CG4022 DOWNSTREAM Cpr67B
3R	8479016	3R_8479016_SNP [dm3] 3R_12653294_SNP [dm6]	G	T	2.368e^-4	0.82	DOWNSTREAM Dtg INTERGENIC
2L	7530084	2L_7530084_SNP [dm3] 2L_7530084_SNP [dm6]	G	T	2.372e^-4	0.82	UTR_5_PRIME RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	11074055	2L_11074055_SNP [dm3] 2L_11074055_SNP [dm6]	T	C	2.373e^-4	0.82	DOWNSTREAM CR45725 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1647353	3L_1647353_SNP [dm3] 3L_1647353_SNP [dm6]	G	A	2.380e^-4	0.82	SYNONYMOUS_CODING CG17249 UPSTREAM Bro	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3973076	2L_3973076_SNP [dm3] 2L_3973076_SNP [dm6]	T	G	2.381e^-4	0.82	INTRON fred
3R	17698011	3R_17698011_SNP [dm3] 3R_21872289_SNP [dm6]	G	A	2.389e^-4	0.82	INTRON CG31431
3R	5709131	3R_5709131_SNP [dm3] 3R_9883409_SNP [dm6]	C	G	2.391e^-4	0.82	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12416023	X_12416023_SNP [dm3] X_12521990_SNP [dm6]	C	T	2.392e^-4	0.82	SYNONYMOUS_CODING CG43921 UTR_5_PRIME CG43921	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	14615291	3R_14615291_SNP [dm3] 3R_18789569_SNP [dm6]	A	C	2.392e^-4	0.82	INTRON CG7720	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	14539282	X_14539282_SNP [dm3] X_14645249_SNP [dm6]	C	T	2.396e^-4	0.82	INTRON NetA
X	17711858	X_17711858_SNP [dm3] X_17817825_SNP [dm6]	G	A	2.396e^-4	0.82	INTERGENIC
3L	2698074	3L_2698074_SNP [dm3] 3L_2698074_SNP [dm6]	A	T	2.398e^-4	0.82	INTRON Fife
3R	20298672	3R_20298672_SNP [dm3] 3R_24472950_SNP [dm6]	A	C	2.398e^-4	0.82	INTERGENIC
2L	5229872	2L_5229872_SNP [dm3] 2L_5229872_SNP [dm6]	G	T	2.404e^-4	0.82	INTRON tkv	TF binding site mE1_TFBS_sbb
X	15315289	X_15315289_INS [dm3] X_15421256_INS [dm6]	G	GTGTG	2.412e^-4	0.82	UTR_5_PRIME Cngl
2R	9459072	2R_9459072_SNP [dm3] 2R_13571567_SNP [dm6]	C	G	2.415e^-4	0.82	UTR_3_PRIME CG42807	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	3142600	2R_3142600_SNP [dm3] 2R_7255095_SNP [dm6]	G	A	2.427e^-4	0.82	EXON CR45280
X	245824	X_245824_SNP [dm3] X_351791_SNP [dm6]	A	G	2.430e^-4	0.82	DOWNSTREAM CG43181 INTRON CG32816	transposable element FlyBase
2R	3077646	2R_3077646_SNP [dm3] 2R_7190141_SNP [dm6]	T	G	2.431e^-4	0.82	INTRON pk
X	17624794	X_17624794_SNP [dm3] X_17730761_SNP [dm6]	A	T	2.432e^-4	0.82	INTRON CG42684
3R	12528728	3R_12528728_SNP [dm3] 3R_16703006_SNP [dm6]	A	G	2.432e^-4	0.82	INTRON Ubx	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	10053627	2L_10053627_SNP [dm3] 2L_10053627_SNP [dm6]	C	G	2.434e^-4	0.82	UPSTREAM Cpr31A EXON CR44875
3R	8477135	3R_8477135_SNP [dm3] 3R_12651413_SNP [dm6]	A	G	2.441e^-4	0.82	SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_sens
3R	12756323	3R_12756323_SNP [dm3] 3R_16930601_SNP [dm6]	C	A	2.441e^-4	0.82	INTRON Abd-B
3R	5847134	3R_5847134_SNP [dm3] 3R_10021412_SNP [dm6]	A	T	2.447e^-4	0.82	START_GAINED Mical UTR_5_PRIME Mical INTRON Mical	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19625475	3R_19625475_SNP [dm3] 3R_23799753_SNP [dm6]	T	C	2.456e^-4	0.82	INTRON mbc
3L	4214680	3L_4214680_SNP [dm3] 3L_4214680_SNP [dm6]	G	A	2.460e^-4	0.82	UPSTREAM Cpr64Ad INTRON CG43367
3L	1363173	3L_1363173_SNP [dm3] 3L_1363173_SNP [dm6]	G	A	2.468e^-4	0.82	INTRON Ptp61F
3R	24426021	3R_24426021_SNP [dm3] 3R_28600299_SNP [dm6]	G	T	2.472e^-4	0.82	UPSTREAM Hrb98DE INTRON Hrb98DE	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9620751	2L_9620751_SNP [dm3] 2L_9620751_SNP [dm6]	G	T	2.477e^-4	0.82	INTRON GlcAT-S
3L	1714333	3L_1714333_SNP [dm3] 3L_1714333_SNP [dm6]	A	G	2.481e^-4	0.82	SYNONYMOUS_CODING CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15728478	3L_15728478_SNP [dm3] 3L_15735378_SNP [dm6]	G	A	2.483e^-4	0.82	INTERGENIC
3L	18199328	3L_18199328_SNP [dm3] 3L_18206228_SNP [dm6]	A	G	2.483e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	3271323	3L_3271323_SNP [dm3] 3L_3271323_SNP [dm6]	C	G	2.487e^-4	0.82	INTRON CG14960
3L	6830726	3L_6830726_DEL [dm3] 3L_6837626_DEL [dm6]	AG	A	2.493e^-4	0.82	INTERGENIC
3R	7276305	3R_7276305_SNP [dm3] 3R_11450583_SNP [dm6]	A	T	2.493e^-4	0.82	INTRON CG17230 & 1 other
3R	24425649	3R_24425649_SNP [dm3] 3R_28599927_SNP [dm6]	G	T	2.495e^-4	0.82	UTR_5_PRIME Hrb98DE UPSTREAM Noa36 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	11222790	2L_11222790_DEL [dm3] 2L_11222790_DEL [dm6]	TTTG	T	2.498e^-4	0.82	INTRON ab
3R	17537947	3R_17537947_SNP [dm3] 3R_21712225_SNP [dm6]	T	C	2.511e^-4	0.82	INTRON CG31176
2R	16817260	2R_16817260_SNP [dm3] 2R_20929755_SNP [dm6]	T	G	2.517e^-4	0.82	INTRON Rx
3L	7875197	3L_7875197_SNP [dm3] 3L_7882097_SNP [dm6]	T	A	2.521e^-4	0.82	INTRON CG32365
2R	11567861	2R_11567861_SNP [dm3] 2R_15680356_SNP [dm6]	C	A	2.522e^-4	0.82	UPSTREAM CG30091 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	14691694	3R_14691694_SNP [dm3] 3R_18865972_SNP [dm6]	C	T	2.531e^-4	0.82	INTERGENIC
2L	10280653	2L_10280653_SNP [dm3] 2L_10280653_SNP [dm6]	A	T	2.533e^-4	0.82	NON_SYNONYMOUS_CODING CG34043
X	19315413	X_19315413_SNP [dm3] X_19421380_SNP [dm6]	T	G	2.540e^-4	0.82	INTRON kek5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2698076	3L_2698076_SNP [dm3] 3L_2698076_SNP [dm6]	T	C	2.543e^-4	0.82	INTRON Fife
2L	9644950	2L_9644950_SNP [dm3] 2L_9644950_SNP [dm6]	T	C	2.543e^-4	0.82	SYNONYMOUS_CODING Apoltp
2L	15386245	2L_15386245_SNP [dm3] 2L_15386245_SNP [dm6]	C	G	2.547e^-4	0.82	INTERGENIC
X	16801486	X_16801486_DEL [dm3] X_16907453_DEL [dm6]	ATTGTATGTATTGC...	A	2.556e^-4	0.82	INTRON CR44754
X	16801503	X_16801503_DEL [dm3] X_16907470_DEL [dm6]	ATTTTC	A	2.556e^-4	0.82	INTRON CR44754
3R	16143458	3R_16143458_SNP [dm3] 3R_20317736_SNP [dm6]	C	A	2.559e^-4	0.82	UPSTREAM CG42668 INTRON CG42668
2R	10663390	2R_10663390_SNP [dm3] 2R_14775885_SNP [dm6]	G	A	2.560e^-4	0.82	INTRON kn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	13587945	2R_13587945_INS [dm3] 2R_17700440_INS [dm6]	A	ATA	2.564e^-4	0.82	SPLICE_SITE_REGION Uhg1 UPSTREAM snoRNA:U29:54Ec & 3 others DOWNSTREAM snoRNA:Me28S-A3407a & 2 others INTRON Uhg1
2L	21884676	2L_21884676_SNP [dm3] 2L_21884676_SNP [dm6]	A	T	2.568e^-4	0.82	INTERGENIC
2R	19069092	2R_19069092_INS [dm3] 2R_23181569_INS [dm6]	G	GCTGT	2.578e^-4	0.82	INTRON CG34371	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15267497	2R_15267497_SNP [dm3] 2R_19379992_SNP [dm6]	G	A	2.581e^-4	0.82	SYNONYMOUS_CODING CG10062 UPSTREAM CG10073
3L	9481161	3L_9481161_SNP [dm3] 3L_9488061_SNP [dm6]	C	A	2.582e^-4	0.82	UTR_3_PRIME CG32036 UPSTREAM pall	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_zfh1
3L	722516	3L_722516_SNP [dm3] 3L_722516_SNP [dm6]	C	T	2.584e^-4	0.82	INTERGENIC
X	16801408	X_16801408_SNP [dm3] X_16907375_SNP [dm6]	T	A	2.586e^-4	0.82	INTRON CR44754
2L	21999660	2L_21999660_SNP [dm3] 2L_21999660_SNP [dm6]	C	A	2.589e^-4	0.82	DOWNSTREAM CR44916 INTERGENIC
3R	25966419	3R_25966419_DEL [dm3] 3R_30140697_DEL [dm6]	CG	C	2.590e^-4	0.82	INTRON AdoR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13588182	2R_13588182_SNP [dm3] 2R_17700677_SNP [dm6]	A	T	2.607e^-4	0.82	UPSTREAM snoRNA:U76:54Eb & 3 others DOWNSTREAM snoRNA:Me28S-A3407a & 3 others EXON Uhg1
3L	15585602	3L_15585602_SNP [dm3] 3L_15592502_SNP [dm6]	C	T	2.607e^-4	0.82	INTRON RhoGAP71E	TF binding site BDTNP1_TFBS_dl
2R	14156290	2R_14156290_SNP [dm3] 2R_18268785_SNP [dm6]	T	G	2.615e^-4	0.82	INTERGENIC
3L	11434509	3L_11434509_SNP [dm3] 3L_11441409_SNP [dm6]	A	C	2.618e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	18645720	X_18645720_SNP [dm3] X_18751687_SNP [dm6]	A	G	2.622e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11586587	3R_11586587_SNP [dm3] 3R_15760865_SNP [dm6]	T	G	2.636e^-4	0.82	INTERGENIC
2R	20572511	2R_20572511_SNP [dm3] 2R_24684988_SNP [dm6]	A	G	2.640e^-4	0.82	UTR_5_PRIME Mmp1 INTRON Mmp1
3R	24424994	3R_24424994_SNP [dm3] 3R_28599272_SNP [dm6]	T	C	2.641e^-4	0.82	UTR_5_PRIME Noa36 UPSTREAM Hrb98DE	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx
3L	13548994	3L_13548994_SNP [dm3] 3L_13555894_SNP [dm6]	A	G	2.646e^-4	0.82	INTRON bru-3
3R	7354439	3R_7354439_SNP [dm3] 3R_11528717_SNP [dm6]	A	T	2.646e^-4	0.82	INTERGENIC
3L	10733914	3L_10733914_SNP [dm3] 3L_10740814_SNP [dm6]	T	G	2.649e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11586052	3R_11586052_SNP [dm3] 3R_15760330_SNP [dm6]	T	C	2.653e^-4	0.82	INTERGENIC
3L	11434512	3L_11434512_SNP [dm3] 3L_11441412_SNP [dm6]	T	C	2.653e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	14471324	2L_14471324_SNP [dm3] 2L_14471324_SNP [dm6]	C	G	2.669e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	14900184	2L_14900184_SNP [dm3] 2L_14900184_SNP [dm6]	G	T	2.669e^-4	0.82	INTERGENIC
3L	14345663	3L_14345663_SNP [dm3] 3L_14352563_SNP [dm6]	A	G	2.683e^-4	0.82	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9434078	3R_9434078_SNP [dm3] 3R_13608356_SNP [dm6]	A	C	2.690e^-4	0.82	UTR_3_PRIME CG9759 DOWNSTREAM CG9759 INTRON CG9759
3R	14388983	3R_14388983_SNP [dm3] 3R_18563261_SNP [dm6]	T	A	2.693e^-4	0.82	INTERGENIC
X	5886300	X_5886300_SNP [dm3] X_5992267_SNP [dm6]	A	G	2.696e^-4	0.82	UTR_3_PRIME CG5966	TF binding site mE1_TFBS_bab1
X	14480032	X_14480032_SNP [dm3] X_14585999_SNP [dm6]	T	C	2.700e^-4	0.82	UTR_3_PRIME CG9413
3R	16295341	3R_16295341_SNP [dm3] 3R_20469619_SNP [dm6]	C	A	2.701e^-4	0.82	INTRON Gfrl
X	17062531	X_17062531_SNP [dm3] X_17168498_SNP [dm6]	G	T	2.703e^-4	0.82	INTRON baz
X	19871594	X_19871594_INS [dm3] X_19977561_INS [dm6]	A	AC	2.703e^-4	0.82	INTERGENIC
3L	7278204	3L_7278204_SNP [dm3] 3L_7285104_SNP [dm6]	C	G	2.713e^-4	0.82	UTR_5_PRIME unc-13-4A	TF binding site mE1_TFBS_cad
3R	4818813	3R_4818813_SNP [dm3] 3R_8993091_SNP [dm6]	C	T	2.718e^-4	0.82	UPSTREAM CG11975 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	14471498	2L_14471498_SNP [dm3] 2L_14471498_SNP [dm6]	A	C	2.718e^-4	0.82	INTERGENIC
2L	11074259	2L_11074259_INS [dm3] 2L_11074259_INS [dm6]	T	TT	2.725e^-4	0.82	DOWNSTREAM CR45725 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	10837352	2R_10837352_SNP [dm3] 2R_14949847_SNP [dm6]	A	G	2.730e^-4	0.82	UPSTREAM aPKC INTRON aPKC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	4202229	2R_4202229_SNP [dm3] 2R_8314724_SNP [dm6]	A	C	2.738e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7278547	3L_7278547_SNP [dm3] 3L_7285447_SNP [dm6]	A	C	2.738e^-4	0.82	INTRON unc-13-4A
3R	7365388	3R_7365388_SNP [dm3] 3R_11539666_SNP [dm6]	A	G	2.747e^-4	0.82	INTRON dpr4
3R	6344151	3R_6344151_SNP [dm3] 3R_10518429_SNP [dm6]	A	T	2.751e^-4	0.82	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	21896969	2L_21896969_SNP [dm3] 2L_21896969_SNP [dm6]	A	C	2.766e^-4	0.82	SYNONYMOUS_CODING CG11629	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8595972	3R_8595972_SNP [dm3] 3R_12770250_SNP [dm6]	A	T	2.769e^-4	0.82	INTRON beat-Vc
2L	11355694	2L_11355694_SNP [dm3] 2L_11355694_SNP [dm6]	C	G	2.771e^-4	0.82	INTERGENIC	regulatory region REDfly_CRMs
X	268051	X_268051_SNP [dm3] X_374018_SNP [dm6]	T	A	2.774e^-4	0.82	INTRON CG32816	regulatory region REDfly_CRMs
2R	12154847	2R_12154847_SNP [dm3] 2R_16267342_SNP [dm6]	C	T	2.776e^-4	0.82	SYNONYMOUS_CODING Khc DOWNSTREAM csul
2R	11327929	2R_11327929_SNP [dm3] 2R_15440424_SNP [dm6]	G	T	2.797e^-4	0.82	INTRON CG43729
2R	14900967	2R_14900967_INS [dm3] 2R_19013462_INS [dm6]	C	CT	2.798e^-4	0.82	INTERGENIC
3R	21876295	3R_21876295_SNP [dm3] 3R_26050573_SNP [dm6]	T	C	2.803e^-4	0.82	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11031393	3L_11031393_SNP [dm3] 3L_11038293_SNP [dm6]	G	A	2.805e^-4	0.82	SYNONYMOUS_CODING CG43693
3R	7278019	3R_7278019_SNP [dm3] 3R_11452297_SNP [dm6]	C	A	2.806e^-4	0.82	UPSTREAM sals DOWNSTREAM PGRP-LB INTRON CG17230
2L	11219801	2L_11219801_SNP [dm3] 2L_11219801_SNP [dm6]	T	A	2.813e^-4	0.82	INTRON ab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	17672539	X_17672539_SNP [dm3] X_17778506_SNP [dm6]	A	T	2.814e^-4	0.82	UTR_3_PRIME unc-4
3L	18199190	3L_18199190_SNP [dm3] 3L_18206090_SNP [dm6]	G	A	2.814e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	9307266	3L_9307266_SNP [dm3] 3L_9314166_SNP [dm6]	A	T	2.815e^-4	0.82	INTERGENIC
3L	9307267	3L_9307267_SNP [dm3] 3L_9314167_SNP [dm6]	A	C	2.828e^-4	0.82	INTERGENIC
3R	13469687	3R_13469687_SNP [dm3] 3R_17643965_SNP [dm6]	C	A	2.830e^-4	0.82	UPSTREAM CG43175 INTRON CG43175
3L	3090995	3L_3090995_SNP [dm3] 3L_3090995_SNP [dm6]	C	T	2.832e^-4	0.82	UTR_3_PRIME Cht7 DOWNSTREAM CG11486 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	23828744	3R_23828744_SNP [dm3] 3R_28003022_SNP [dm6]	A	T	2.833e^-4	0.82	INTERGENIC
2R	11972412	2R_11972412_SNP [dm3] 2R_16084907_SNP [dm6]	C	T	2.841e^-4	0.82	SYNONYMOUS_CODING Dg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	1549813	3R_1549813_SNP [dm3] 3R_5724091_SNP [dm6]	C	T	2.841e^-4	0.82	EXON CR44924	TF binding site BDTNP1_TFBS_gt
3R	23519269	3R_23519269_SNP [dm3] 3R_27693547_SNP [dm6]	G	A	2.852e^-4	0.82	UPSTREAM CG43319 DOWNSTREAM CG12880 INTERGENIC
2L	9570049	2L_9570049_SNP [dm3] 2L_9570049_SNP [dm6]	C	G	2.874e^-4	0.82	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8866484	3L_8866484_SNP [dm3] 3L_8873384_SNP [dm6]	G	T	2.875e^-4	0.82	INTRON dally	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	20518051	2R_20518051_SNP [dm3] 2R_24630528_SNP [dm6]	C	T	2.876e^-4	0.82	UPSTREAM Cyp9c1 DOWNSTREAM CR43787 INTRON CG13594
3L	11191260	3L_11191260_SNP [dm3] 3L_11198160_SNP [dm6]	G	A	2.898e^-4	0.82	UPSTREAM GlcAT-P DOWNSTREAM Plod INTERGENIC
3R	25091469	3R_25091469_SNP [dm3] 3R_29265747_SNP [dm6]	C	T	2.906e^-4	0.82	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16866846	2R_16866846_SNP [dm3] 2R_20979341_SNP [dm6]	A	T	2.911e^-4	0.82	UTR_5_PRIME CG9313 UPSTREAM CG15650
X	18388353	X_18388353_SNP [dm3] X_18494320_SNP [dm6]	G	A	2.919e^-4	0.82	UPSTREAM CR45627 & 1 other DOWNSTREAM GalNAc-T2 INTERGENIC
3L	9715826	3L_9715826_SNP [dm3] 3L_9722726_SNP [dm6]	A	G	2.928e^-4	0.82	SYNONYMOUS_CODING nbs UPSTREAM defl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	4117727	3L_4117727_SNP [dm3] 3L_4117727_SNP [dm6]	A	T	2.933e^-4	0.82	INTRON Chd64
3R	7357015	3R_7357015_SNP [dm3] 3R_11531293_SNP [dm6]	A	G	2.948e^-4	0.82	INTERGENIC
3L	2660374	3L_2660374_SNP [dm3] 3L_2660374_SNP [dm6]	C	T	2.948e^-4	0.82	SYNONYMOUS_CODING CG33233 UTR_3_PRIME CG33233 INTRON Fife	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7366142	3R_7366142_SNP [dm3] 3R_11540420_SNP [dm6]	T	G	2.950e^-4	0.82	INTRON dpr4
3R	25171388	3R_25171388_SNP [dm3] 3R_29345666_SNP [dm6]	C	G	2.950e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7700032	3L_7700032_SNP [dm3] 3L_7706932_SNP [dm6]	G	T	2.975e^-4	0.82	INTRON CG32373 & 1 other
3R	8481373	3R_8481373_SNP [dm3] 3R_12655651_SNP [dm6]	G	C	2.982e^-4	0.82	INTRON CG6225
2L	21805871	2L_21805871_SNP [dm3] 2L_21805871_SNP [dm6]	G	C	2.991e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	12580013	2R_12580013_SNP [dm3] 2R_16692508_SNP [dm6]	C	A	2.992e^-4	0.82	SYNONYMOUS_CODING CG5210 INTRON CG30463	TF binding site mE1_TFBS_cad
3L	1206154	3L_1206154_SNP [dm3] 3L_1206154_SNP [dm6]	C	T	2.994e^-4	0.82	SYNONYMOUS_CODING mwh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12689681	2L_12689681_SNP [dm3] 2L_12689681_SNP [dm6]	A	T	3.000e^-4	0.82	DOWNSTREAM CG5525 INTERGENIC	TF binding site mE1_TFBS_inv
3L	18302783	3L_18302783_SNP [dm3] 3L_18309683_SNP [dm6]	T	C	3.000e^-4	0.82	INTERGENIC
X	13473366	X_13473366_SNP [dm3] X_13579333_SNP [dm6]	G	C	3.004e^-4	0.82	INTRON Tango13
2R	10614869	2R_10614869_SNP [dm3] 2R_14727364_SNP [dm6]	G	A	3.010e^-4	0.82	INTERGENIC
3L	15733477	3L_15733477_SNP [dm3] 3L_15740377_SNP [dm6]	C	T	3.010e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	11586586	3R_11586586_SNP [dm3] 3R_15760864_SNP [dm6]	T	G	3.011e^-4	0.82	INTERGENIC
2R	3057882	2R_3057882_SNP [dm3] 2R_7170377_SNP [dm6]	A	T	3.012e^-4	0.82	INTRON pk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6100966	2L_6100966_SNP [dm3] 2L_6100966_SNP [dm6]	C	A	3.022e^-4	0.82	INTRON stai	TF binding site BDTNP1_TFBS_dl
2L	12930457	2L_12930457_SNP [dm3] 2L_12930457_SNP [dm6]	G	A	3.035e^-4	0.82	DOWNSTREAM ACXE INTERGENIC
3R	9583066	3R_9583066_SNP [dm3] 3R_13757344_SNP [dm6]	C	T	3.040e^-4	0.82	SYNONYMOUS_CODING CG34383 UTR_3_PRIME CG34383
2R	17128682	2R_17128682_SNP [dm3] 2R_21241177_SNP [dm6]	A	G	3.045e^-4	0.82	INTRON ASPP
3L	1561176	3L_1561176_SNP [dm3] 3L_1561176_SNP [dm6]	C	T	3.054e^-4	0.82	SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	16989113	3R_16989113_SNP [dm3] 3R_21163391_SNP [dm6]	A	G	3.063e^-4	0.82	UPSTREAM CG5810 INTRON SNF4Agamma
3L	410399	3L_410399_SNP [dm3] 3L_410399_SNP [dm6]	C	A	3.072e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	4909380	2R_4909380_SNP [dm3] 2R_9021875_SNP [dm6]	A	G	3.072e^-4	0.82	INTRON CG8170	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20232487	3R_20232487_SNP [dm3] 3R_24406765_SNP [dm6]	C	A	3.074e^-4	0.82	INTRON nAChRalpha1
3R	11857221	3R_11857221_SNP [dm3] 3R_16031499_SNP [dm6]	G	T	3.078e^-4	0.82	INTRON pnr
3L	11191254	3L_11191254_SNP [dm3] 3L_11198154_SNP [dm6]	C	T	3.080e^-4	0.82	UPSTREAM GlcAT-P DOWNSTREAM Plod INTERGENIC
3L	11191255	3L_11191255_SNP [dm3] 3L_11198155_SNP [dm6]	C	G	3.080e^-4	0.82	UPSTREAM GlcAT-P DOWNSTREAM Plod INTERGENIC
2R	8136809	2R_8136809_SNP [dm3] 2R_12249304_SNP [dm6]	G	T	3.094e^-4	0.82	INTERGENIC
3R	22221157	3R_22221157_SNP [dm3] 3R_26395435_SNP [dm6]	T	G	3.094e^-4	0.82	INTERGENIC
2R	15668943	2R_15668943_SNP [dm3] 2R_19781438_SNP [dm6]	C	T	3.104e^-4	0.82	INTERGENIC
2L	6883733	2L_6883733_SNP [dm3] 2L_6883733_SNP [dm6]	T	G	3.105e^-4	0.82	INTRON Nlg2
3R	14038121	3R_14038121_SNP [dm3] 3R_18212399_SNP [dm6]	C	G	3.108e^-4	0.82	INTRON CG7985
3R	22515663	3R_22515663_SNP [dm3] 3R_26689941_SNP [dm6]	G	A	3.113e^-4	0.82	INTERGENIC
2L	5519263	2L_5519263_SNP [dm3] 2L_5519263_SNP [dm6]	G	A	3.114e^-4	0.82	SYNONYMOUS_CODING CG7382 UPSTREAM cl DOWNSTREAM CG14020	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	10953482	3R_10953482_SNP [dm3] 3R_15127760_SNP [dm6]	A	C	3.117e^-4	0.82	INTRON CG42788
2R	4679025	2R_4679025_SNP [dm3] 2R_8791520_SNP [dm6]	T	A	3.119e^-4	0.82	INTERGENIC
3R	7274693	3R_7274693_SNP [dm3] 3R_11448971_SNP [dm6]	A	G	3.129e^-4	0.82	INTRON CG17230 & 1 other
2R	18460627	2R_18460627_SNP [dm3] 2R_22573122_SNP [dm6]	C	G	3.136e^-4	0.82	INTRON dnr1	TF binding site mE1_TFBS_chinmo
X	19873194	X_19873194_INS [dm3] X_19979161_INS [dm6]	T	TT	3.137e^-4	0.82	INTERGENIC
X	5743516	X_5743516_SNP [dm3] X_5849483_SNP [dm6]	A	G	3.141e^-4	0.82	INTERGENIC
2L	12485010	2L_12485010_SNP [dm3] 2L_12485010_SNP [dm6]	T	C	3.144e^-4	0.82	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	11347910	2R_11347910_SNP [dm3] 2R_15460405_SNP [dm6]	C	A	3.153e^-4	0.82	INTRON CG43729
X	18645726	X_18645726_SNP [dm3] X_18751693_SNP [dm6]	T	C	3.155e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	22218530	3L_22218530_SNP [dm3] 3L_22225430_SNP [dm6]	G	T	3.161e^-4	0.82	DOWNSTREAM CR45035 INTRON olf413	TF binding site BDTNP1_TFBS_dl
3R	16291562	3R_16291562_SNP [dm3] 3R_20465840_SNP [dm6]	G	A	3.171e^-4	0.82	INTRON Gfrl
2R	13415363	2R_13415363_SNP [dm3] 2R_17527858_SNP [dm6]	G	C	3.172e^-4	0.82	SYNONYMOUS_CODING Patronin	TF binding site mE1_TFBS_HSA
2L	8782999	2L_8782999_SNP [dm3] 2L_8782999_SNP [dm6]	T	C	3.173e^-4	0.82	UPSTREAM CG42710 INTERGENIC
3L	3497228	3L_3497228_SNP [dm3] 3L_3497228_SNP [dm6]	C	G	3.173e^-4	0.82	INTRON CG42324
2L	21846992	2L_21846992_SNP [dm3] 2L_21846992_SNP [dm6]	A	C	3.183e^-4	0.82	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	19942767	3R_19942767_SNP [dm3] 3R_24117045_SNP [dm6]	A	C	3.190e^-4	0.82	UPSTREAM CG13607 INTRON Rootletin
3R	18763056	3R_18763056_DEL [dm3] 3R_22937334_DEL [dm6]	CTACAA	C	3.193e^-4	0.82	INTRON klg
2L	18628692	2L_18628692_SNP [dm3] 2L_18628692_SNP [dm6]	C	T	3.193e^-4	0.82	INTRON MESR3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9163342	2R_9163342_SNP [dm3] 2R_13275837_SNP [dm6]	T	A	3.196e^-4	0.82	INTRON Dh31-R
3R	5899546	3R_5899546_DEL [dm3] 3R_10073824_DEL [dm6]	TAAACATTTTTATTACATAT...	T	3.201e^-4	0.82	UTR_3_PRIME CG5361 DOWNSTREAM nerfin-2	TF binding site mE1_TFBS_cad
3L	13610210	3L_13610210_SNP [dm3] 3L_13617110_SNP [dm6]	G	A	3.207e^-4	0.82	INTRON bru-3
2L	6325135	2L_6325135_SNP [dm3] 2L_6325135_SNP [dm6]	T	G	3.217e^-4	0.82	INTRON PDZ-GEF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	11434536	3L_11434536_SNP [dm3] 3L_11441436_SNP [dm6]	G	C	3.224e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	21675748	3R_21675748_SNP [dm3] 3R_25850026_SNP [dm6]	A	C	3.228e^-4	0.82	DOWNSTREAM CG14545 INTERGENIC
3R	13101691	3R_13101691_SNP [dm3] 3R_17275969_SNP [dm6]	C	T	3.235e^-4	0.82	INTERGENIC
3L	539977	3L_539977_SNP [dm3] 3L_539977_SNP [dm6]	C	G	3.240e^-4	0.82	UTR_5_PRIME klar UPSTREAM CG17180	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	6098000	2L_6098000_SNP [dm3] 2L_6098000_SNP [dm6]	G	A	3.240e^-4	0.82	SYNONYMOUS_CODING CG9175	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_chinmo
2R	11835322	2R_11835322_SNP [dm3] 2R_15947817_SNP [dm6]	T	A	3.260e^-4	0.82	DOWNSTREAM Cyp4aa1 INTRON Strn-Mlck
3L	2428522	3L_2428522_SNP [dm3] 3L_2428522_SNP [dm6]	A	G	3.265e^-4	0.82	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	8716133	3R_8716133_SNP [dm3] 3R_12890411_SNP [dm6]	A	G	3.271e^-4	0.82	INTERGENIC
2R	5055776	2R_5055776_SNP [dm3] 2R_9168271_SNP [dm6]	T	C	3.275e^-4	0.82	UPSTREAM CG42382 DOWNSTREAM Rad51C INTRON Rme-8	TF binding site mE1_TFBS_cad
2L	2884577	2L_2884577_SNP [dm3] 2L_2884577_SNP [dm6]	C	T	3.279e^-4	0.82	INTRON NTPase	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_hkb mE1_TFBS_Trl
2L	9946962	2L_9946962_SNP [dm3] 2L_9946962_SNP [dm6]	A	C	3.279e^-4	0.82	INTRON CG5853
2R	9106776	2R_9106776_SNP [dm3] 2R_13219271_SNP [dm6]	C	T	3.279e^-4	0.82	UPSTREAM CG4630 DOWNSTREAM CG4646 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	2029379	2L_2029379_SNP [dm3] 2L_2029379_SNP [dm6]	G	A	3.292e^-4	0.82	SYNONYMOUS_CODING CG4238	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5064424	X_5064424_SNP [dm3] X_5170391_SNP [dm6]	G	A	3.307e^-4	0.82	INTRON rg & 1 other
2R	14337336	2R_14337336_SNP [dm3] 2R_18449831_SNP [dm6]	T	A	3.314e^-4	0.82	SYNONYMOUS_CODING Prp19 DOWNSTREAM CG5189 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	6019040	3L_6019040_SNP [dm3] 3L_6025940_SNP [dm6]	G	A	3.319e^-4	0.82	UTR_3_PRIME PVRAP
2R	14029960	2R_14029960_SNP [dm3] 2R_18142455_SNP [dm6]	C	T	3.322e^-4	0.82	UPSTREAM snoRNA:Psi18S-1347a & 2 others INTRON pAbp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens
2L	14471351	2L_14471351_SNP [dm3] 2L_14471351_SNP [dm6]	A	G	3.323e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	15930004	2L_15930004_SNP [dm3] 2L_15930004_SNP [dm6]	T	A	3.324e^-4	0.82	INTRON beat-Ib
3L	14813565	3L_14813565_SNP [dm3] 3L_14820465_SNP [dm6]	G	A	3.327e^-4	0.82	INTRON CG17839
X	6547943	X_6547943_SNP [dm3] X_6653910_SNP [dm6]	C	T	3.332e^-4	0.82	SPLICE_SITE_REGION CG3226 SYNONYMOUS_CODING CG3226 UPSTREAM l_1_G0148 DOWNSTREAM pigs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	7356334	3R_7356334_SNP [dm3] 3R_11530612_SNP [dm6]	C	A	3.334e^-4	0.82	INTERGENIC
3R	14616574	3R_14616574_SNP [dm3] 3R_18790852_SNP [dm6]	G	T	3.339e^-4	0.82	INTRON CG7720
X	13984925	X_13984925_SNP [dm3] X_14090892_SNP [dm6]	G	A	3.342e^-4	0.82	INTERGENIC
X	245477	X_245477_SNP [dm3] X_351444_SNP [dm6]	C	T	3.344e^-4	0.82	DOWNSTREAM CG3777 & 1 other INTRON CG32816
3L	9307254	3L_9307254_DEL [dm3] 3L_9314154_DEL [dm6]	GAACGAGC	T	3.346e^-4	0.82	INTERGENIC
3L	10793340	3L_10793340_SNP [dm3] 3L_10800240_SNP [dm6]	A	T	3.359e^-4	0.82	UPSTREAM CG12523 INTERGENIC
2L	11082054	2L_11082054_SNP [dm3] 2L_11082054_SNP [dm6]	C	A	3.360e^-4	0.82	UPSTREAM AstC INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	797308	3L_797308_SNP [dm3] 3L_797308_SNP [dm6]	T	C	3.366e^-4	0.82	INTERGENIC
3R	13570318	3R_13570318_SNP [dm3] 3R_17744596_SNP [dm6]	C	A	3.368e^-4	0.82	INTRON TyrRII	TF binding site mE1_TFBS_cad
X	14539289	X_14539289_INS [dm3] X_14645256_INS [dm6]	T	TCCCTGTTTTT...	3.372e^-4	0.82	INTRON NetA
3L	2125327	3L_2125327_SNP [dm3] 3L_2125327_SNP [dm6]	G	T	3.372e^-4	0.82	SYNONYMOUS_CODING zormin UTR_3_PRIME zormin	TF binding site mE1_TFBS_cad
X	10196166	X_10196166_SNP [dm3] X_10302133_SNP [dm6]	G	A	3.381e^-4	0.82	INTRON alpha-Man-I
X	19250476	X_19250476_SNP [dm3] X_19356443_SNP [dm6]	A	T	3.382e^-4	0.82	INTRON kek5
2R	18453286	2R_18453286_SNP [dm3] 2R_22565781_SNP [dm6]	G	A	3.384e^-4	0.82	SYNONYMOUS_CODING dnr1	TF binding site mE1_TFBS_cad
3L	1405894	3L_1405894_SNP [dm3] 3L_1405894_SNP [dm6]	A	G	3.387e^-4	0.82	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	2430647	X_2430647_SNP [dm3] X_2536614_SNP [dm6]	G	C	3.392e^-4	0.82	INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	6089046	2L_6089046_SNP [dm3] 2L_6089046_SNP [dm6]	T	C	3.396e^-4	0.82	INTRON Kr-h1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
3L	6558071	3L_6558071_SNP [dm3] 3L_6564971_SNP [dm6]	G	A	3.407e^-4	0.82	SPLICE_SITE_REGION jv SYNONYMOUS_CODING jv INTRON CG18769	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2L	15386252	2L_15386252_DEL [dm3] 2L_15386252_DEL [dm6]	TT	T	3.412e^-4	0.82	INTERGENIC
X	11805096	X_11805096_SNP [dm3] X_11911063_SNP [dm6]	G	A	3.412e^-4	0.82	SPLICE_SITE_REGION pot INTRON pot	TF binding site mE1_TFBS_chinmo
2L	376777	2L_376777_SNP [dm3] 2L_376777_SNP [dm6]	G	A	3.415e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	21761049	3L_21761049_SNP [dm3] 3L_21767949_SNP [dm6]	T	C	3.430e^-4	0.82	INTRON Syn1 & 1 other
2L	3116269	2L_3116269_SNP [dm3] 2L_3116269_SNP [dm6]	T	C	3.432e^-4	0.82	INTRON toc
X	19873199	X_19873199_INS [dm3] X_19979166_INS [dm6]	T	TCTGTAGTT	3.437e^-4	0.82	INTERGENIC
3R	14676446	3R_14676446_SNP [dm3] 3R_18850724_SNP [dm6]	T	C	3.438e^-4	0.82	DOWNSTREAM CR45633 & 1 other INTERGENIC
2R	13801154	2R_13801154_SNP [dm3] 2R_17913649_SNP [dm6]	C	A	3.445e^-4	0.82	INTRON Elk
2R	20572519	2R_20572519_SNP [dm3] 2R_24684996_SNP [dm6]	C	G	3.446e^-4	0.82	START_GAINED Mmp1 UTR_5_PRIME Mmp1 INTRON Mmp1
2L	11010372	2L_11010372_SNP [dm3] 2L_11010372_SNP [dm6]	G	T	3.459e^-4	0.82	SYNONYMOUS_CODING Art8 UTR_3_PRIME Nup154 UPSTREAM dUTPase DOWNSTREAM Nup154	TF binding site mE1_TFBS_sens
3R	1249552	3R_1249552_SNP [dm3] 3R_5423830_SNP [dm6]	G	T	3.461e^-4	0.82	INTRON CG14669
2L	18885261	2L_18885261_SNP [dm3] 2L_18885261_SNP [dm6]	C	G	3.462e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	17961416	2R_17961416_SNP [dm3] 2R_22073911_SNP [dm6]	T	G	3.465e^-4	0.82	UPSTREAM CG11474 INTRON CG2921	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1696470	2L_1696470_SNP [dm3] 2L_1696470_SNP [dm6]	C	A	3.465e^-4	0.82	SYNONYMOUS_CODING chinmo UTR_3_PRIME chinmo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10636889	2L_10636889_SNP [dm3] 2L_10636889_SNP [dm6]	C	T	3.466e^-4	0.82	INTRON CG7329
3R	17009866	3R_17009866_SNP [dm3] 3R_21184144_SNP [dm6]	T	C	3.469e^-4	0.82	INTRON SNF4Agamma	TF binding site mE1_TFBS_inv
2L	14954640	2L_14954640_DEL [dm3] 2L_14954640_DEL [dm6]	AAGGCTATA	A	3.470e^-4	0.82	INTRON CG42313
2R	17411421	2R_17411421_SNP [dm3] 2R_21523916_SNP [dm6]	A	T	3.487e^-4	0.82	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18159767	X_18159767_SNP [dm3] X_18265734_SNP [dm6]	G	A	3.487e^-4	0.82	INTERGENIC
2R	15394287	2R_15394287_SNP [dm3] 2R_19506782_SNP [dm6]	C	T	3.487e^-4	0.82	UPSTREAM tRNA:H:56E INTERGENIC
2L	6322155	2L_6322155_SNP [dm3] 2L_6322155_SNP [dm6]	T	C	3.513e^-4	0.82	UTR_3_PRIME Ddr
3L	9481160	3L_9481160_SNP [dm3] 3L_9488060_SNP [dm6]	C	A	3.514e^-4	0.82	UTR_3_PRIME CG32036 UPSTREAM pall	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_zfh1
2L	3511553	2L_3511553_SNP [dm3] 2L_3511553_SNP [dm6]	A	G	3.515e^-4	0.82	SYNONYMOUS_CODING CG33123	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	18199273	3L_18199273_SNP [dm3] 3L_18206173_SNP [dm6]	C	A	3.516e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	7527708	2L_7527708_SNP [dm3] 2L_7527708_SNP [dm6]	G	A	3.522e^-4	0.82	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9880852	2L_9880852_SNP [dm3] 2L_9880852_SNP [dm6]	T	C	3.529e^-4	0.82	INTRON nAChRalpha6
X	249994	X_249994_SNP [dm3] X_355961_SNP [dm6]	T	A	3.529e^-4	0.82	UPSTREAM y INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	2888986	2L_2888986_SNP [dm3] 2L_2888986_SNP [dm6]	G	A	3.535e^-4	0.82	INTRON lilli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	6347881	3R_6347881_SNP [dm3] 3R_10522159_SNP [dm6]	T	C	3.539e^-4	0.82	INTRON hth
3L	12285020	3L_12285020_SNP [dm3] 3L_12291920_SNP [dm6]	G	A	3.540e^-4	0.82	SYNONYMOUS_CODING CG4328	TF binding site BDTNP1_TFBS_prd
2R	20355730	2R_20355730_SNP [dm3] 2R_24468207_SNP [dm6]	C	T	3.545e^-4	0.82	INTRON CG13579
3L	18346603	3L_18346603_SNP [dm3] 3L_18353503_SNP [dm6]	G	T	3.546e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	3080016	2R_3080016_SNP [dm3] 2R_7192511_SNP [dm6]	A	T	3.547e^-4	0.82	INTRON pk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	9570400	2L_9570400_SNP [dm3] 2L_9570400_SNP [dm6]	A	G	3.553e^-4	0.82	UTR_5_PRIME CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1228793	2L_1228793_SNP [dm3] 2L_1228793_SNP [dm6]	T	C	3.553e^-4	0.82	SYNONYMOUS_CODING CG42329
2R	20336831	2R_20336831_SNP [dm3] 2R_24449308_SNP [dm6]	A	C	3.557e^-4	0.82	INTERGENIC
2R	16537390	2R_16537390_DEL [dm3] 2R_20649885_DEL [dm6]	AC	A	3.560e^-4	0.82	INTRON Lrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	21886387	2L_21886387_SNP [dm3] 2L_21886387_SNP [dm6]	C	G	3.563e^-4	0.82	INTERGENIC
3R	7078944	3R_7078944_SNP [dm3] 3R_11253222_SNP [dm6]	T	C	3.566e^-4	0.82	INTRON CR43283 EXON CR43283	TF binding site mE1_TFBS_kn
3R	25257426	3R_25257426_SNP [dm3] 3R_29431704_SNP [dm6]	T	C	3.568e^-4	0.82	INTRON Ptp99A
3L	9326484	3L_9326484_SNP [dm3] 3L_9333384_SNP [dm6]	A	G	3.568e^-4	0.82	UPSTREAM PGRP-LA INTERGENIC
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	3.584e^-4	0.82	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15508134	2R_15508134_SNP [dm3] 2R_19620629_SNP [dm6]	A	G	3.591e^-4	0.82	INTRON sm
2L	7047126	2L_7047126_SNP [dm3] 2L_7047126_SNP [dm6]	A	C	3.598e^-4	0.82	SYNONYMOUS_CODING milt INTRON milt
3L	1363178	3L_1363178_INS [dm3] 3L_1363178_INS [dm6]	A	ATGGGCACCTAATTACTTTG...	3.609e^-4	0.82	INTRON Ptp61F
2R	3874793	2R_3874793_SNP [dm3] 2R_7987288_SNP [dm6]	A	C	3.615e^-4	0.82	UPSTREAM ACC INTRON ACC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	19372409	3R_19372409_SNP [dm3] 3R_23546687_SNP [dm6]	A	G	3.620e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	11728415	3L_11728415_SNP [dm3] 3L_11735315_SNP [dm6]	C	T	3.631e^-4	0.82	UTR_3_PRIME CG6024 DOWNSTREAM CG6024
2L	9644740	2L_9644740_SNP [dm3] 2L_9644740_SNP [dm6]	T	C	3.633e^-4	0.82	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8203792	2L_8203792_SNP [dm3] 2L_8203792_SNP [dm6]	G	A	3.635e^-4	0.82	INTRON CR44119 & 1 other
3R	7353535	3R_7353535_SNP [dm3] 3R_11527813_SNP [dm6]	C	T	3.636e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18388348	X_18388348_SNP [dm3] X_18494315_SNP [dm6]	G	A	3.641e^-4	0.82	UPSTREAM CR45627 & 1 other DOWNSTREAM GalNAc-T2 INTERGENIC
X	18388355	X_18388355_SNP [dm3] X_18494322_SNP [dm6]	T	A	3.641e^-4	0.82	UPSTREAM CR45627 & 1 other DOWNSTREAM GalNAc-T2 INTERGENIC
3R	22515240	3R_22515240_SNP [dm3] 3R_26689518_SNP [dm6]	T	G	3.643e^-4	0.82	INTERGENIC
2L	16504341	2L_16504341_SNP [dm3] 2L_16504341_SNP [dm6]	A	G	3.645e^-4	0.82	INTRON Tpr2
3R	6343632	3R_6343632_SNP [dm3] 3R_10517910_SNP [dm6]	G	T	3.647e^-4	0.82	INTRON hth
3R	13096208	3R_13096208_SNP [dm3] 3R_17270486_SNP [dm6]	C	G	3.674e^-4	0.82	EXON CR44258
2R	12014711	2R_12014711_SNP [dm3] 2R_16127206_SNP [dm6]	C	T	3.686e^-4	0.82	INTRON spin	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	19880247	2R_19880247_SNP [dm3] 2R_23992724_SNP [dm6]	A	G	3.689e^-4	0.82	SYNONYMOUS_CODING CG3860 DOWNSTREAM Pask & 1 other
X	12021512	X_12021512_SNP [dm3] X_12127479_SNP [dm6]	A	T	3.690e^-4	0.82	UPSTREAM Ten-a INTRON Ten-a
2L	3129752	2L_3129752_SNP [dm3] 2L_3129752_SNP [dm6]	G	A	3.693e^-4	0.82	DOWNSTREAM CG15403 INTRON toc
X	9500168	X_9500168_SNP [dm3] X_9606135_SNP [dm6]	T	C	3.693e^-4	0.82	UPSTREAM Lst8 DOWNSTREAM Aats-lys INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14697258	3R_14697258_SNP [dm3] 3R_18871536_SNP [dm6]	A	G	3.697e^-4	0.82	INTERGENIC
2R	14652987	2R_14652987_INS [dm3] 2R_18765482_INS [dm6]	T	TAAAATGTATACTTT...	3.708e^-4	0.82	INTRON Mctp
X	19018280	X_19018280_SNP [dm3] X_19124247_SNP [dm6]	A	T	3.720e^-4	0.82	NON_SYNONYMOUS_CODING CG15882 DOWNSTREAM tgy
X	13231232	X_13231232_SNP [dm3] X_13337199_SNP [dm6]	C	A	3.722e^-4	0.82	INTRON RpS15Aa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	7274322	3R_7274322_SNP [dm3] 3R_11448600_SNP [dm6]	C	G	3.723e^-4	0.82	INTRON CG17230 & 1 other
2L	19092998	2L_19092998_SNP [dm3] 2L_19092998_SNP [dm6]	G	A	3.739e^-4	0.82	INTRON Lim3
X	19873187	X_19873187_INS [dm3] X_19979154_INS [dm6]	A	ATTTTCTATTAAGAGATAT...	3.740e^-4	0.82	INTERGENIC
2L	12293941	2L_12293941_SNP [dm3] 2L_12293941_SNP [dm6]	T	C	3.745e^-4	0.82	INTRON aret
X	2812745	X_2812745_INS [dm3] X_2918712_INS [dm6]	T	TT	3.747e^-4	0.82	INTRON kirre
3R	24423705	3R_24423705_SNP [dm3] 3R_28597983_SNP [dm6]	G	C	3.777e^-4	0.82	DOWNSTREAM Noa36 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24425323	3R_24425323_SNP [dm3] 3R_28599601_SNP [dm6]	T	C	3.777e^-4	0.82	UPSTREAM Hrb98DE & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	13926849	3R_13926849_SNP [dm3] 3R_18101127_SNP [dm6]	G	A	3.777e^-4	0.82	INTRON sr
3L	9979060	3L_9979060_DEL [dm3] 3L_9985960_DEL [dm6]	AA	A	3.778e^-4	0.82	INTRON dpr6
2R	17725920	2R_17725920_SNP [dm3] 2R_21838415_SNP [dm6]	C	T	3.788e^-4	0.82	SYNONYMOUS_CODING CG4372
3L	12136241	3L_12136241_SNP [dm3] 3L_12143141_SNP [dm6]	C	T	3.793e^-4	0.82	UTR_3_PRIME RhoGAP68F DOWNSTREAM CG5642
X	4317327	X_4317327_SNP [dm3] X_4423294_SNP [dm6]	T	G	3.805e^-4	0.82	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl
X	5251186	X_5251186_SNP [dm3] X_5357153_SNP [dm6]	G	A	3.807e^-4	0.82	INTRON SK
X	16523606	X_16523606_SNP [dm3] X_16629573_SNP [dm6]	A	T	3.809e^-4	0.82	SYNONYMOUS_CODING Rok	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	4936724	2R_4936724_SNP [dm3] 2R_9049219_SNP [dm6]	C	T	3.817e^-4	0.82	INTRON CG13743
3L	6474054	3L_6474054_SNP [dm3] 3L_6480954_SNP [dm6]	A	T	3.822e^-4	0.82	INTRON CG42747
2L	6100284	2L_6100284_SNP [dm3] 2L_6100284_SNP [dm6]	T	C	3.831e^-4	0.82	UPSTREAM stai INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	5885681	3L_5885681_SNP [dm3] 3L_5892581_SNP [dm6]	A	G	3.833e^-4	0.82	INTERGENIC
3L	1647322	3L_1647322_SNP [dm3] 3L_1647322_SNP [dm6]	C	T	3.834e^-4	0.82	NON_SYNONYMOUS_CODING CG17249 UPSTREAM Bro	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	7341879	3R_7341879_SNP [dm3] 3R_11516157_SNP [dm6]	C	G	3.837e^-4	0.82	INTERGENIC
2R	10614874	2R_10614874_DEL [dm3] 2R_14727369_DEL [dm6]	GG	G	3.838e^-4	0.82	INTERGENIC
2L	10482801	2L_10482801_SNP [dm3] 2L_10482801_SNP [dm6]	A	C	3.848e^-4	0.82	UPSTREAM Grip75 INTRON RluA-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	14236588	3L_14236588_DEL [dm3] 3L_14243488_DEL [dm6]	CTAGGA	C	3.852e^-4	0.82	INTERGENIC
3L	12025751	3L_12025751_SNP [dm3] 3L_12032651_SNP [dm6]	C	T	3.853e^-4	0.82	INTRON rols & 1 other
3R	23441387	3R_23441387_SNP [dm3] 3R_27615665_SNP [dm6]	T	A	3.858e^-4	0.82	INTRON Tusp
X	10204066	X_10204066_SNP [dm3] X_10310033_SNP [dm6]	G	T	3.864e^-4	0.82	UPSTREAM alpha-Man-I INTRON alpha-Man-I
2R	8447091	2R_8447091_SNP [dm3] 2R_12559586_SNP [dm6]	T	C	3.864e^-4	0.82	SYNONYMOUS_CODING fra
3R	11635239	3R_11635239_SNP [dm3] 3R_15809517_SNP [dm6]	G	T	3.868e^-4	0.82	INTRON alpha-Man-IIb
3L	12486331	3L_12486331_SNP [dm3] 3L_12493231_SNP [dm6]	C	T	3.870e^-4	0.82	SYNONYMOUS_CODING CG10657 EXON CR45682	TF binding site mE1_TFBS_cad
2L	9448874	2L_9448874_SNP [dm3] 2L_9448874_SNP [dm6]	G	C	3.873e^-4	0.82	UPSTREAM numb INTRON numb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_zfh1
X	10204322	X_10204322_SNP [dm3] X_10310289_SNP [dm6]	C	G	3.884e^-4	0.82	INTRON alpha-Man-I
3R	26105893	3R_26105893_SNP [dm3] 3R_30280171_SNP [dm6]	T	C	3.884e^-4	0.82	SYNONYMOUS_CODING hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4595388	3R_4595388_SNP [dm3] 3R_8769666_SNP [dm6]	G	A	3.887e^-4	0.82	SYNONYMOUS_CODING CG8236
2L	10279462	2L_10279462_SNP [dm3] 2L_10279462_SNP [dm6]	A	C	3.890e^-4	0.82	UPSTREAM Utx INTRON CG34043
2L	9883912	2L_9883912_SNP [dm3] 2L_9883912_SNP [dm6]	C	G	3.894e^-4	0.82	INTRON nAChRalpha6
2L	1690893	2L_1690893_SNP [dm3] 2L_1690893_SNP [dm6]	C	T	3.902e^-4	0.82	INTRON chinmo
2R	14652768	2R_14652768_SNP [dm3] 2R_18765263_SNP [dm6]	A	G	3.904e^-4	0.82	INTRON Mctp
2R	10614870	2R_10614870_SNP [dm3] 2R_14727365_SNP [dm6]	T	G	3.909e^-4	0.82	INTERGENIC
3L	21621098	3L_21621098_SNP [dm3] 3L_21627998_SNP [dm6]	T	C	3.914e^-4	0.82	SYNONYMOUS_CODING CG11306 DOWNSTREAM MED1
3L	3999147	3L_3999147_INS [dm3] 3L_3999147_INS [dm6]	C	CCTCACTTT	3.915e^-4	0.82	INTERGENIC
2R	9459156	2R_9459156_SNP [dm3] 2R_13571651_SNP [dm6]	T	A	3.919e^-4	0.82	SYNONYMOUS_CODING CG42807	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8203812	2L_8203812_SNP [dm3] 2L_8203812_SNP [dm6]	C	T	3.922e^-4	0.82	INTRON CR44119 & 1 other
2L	2029423	2L_2029423_SNP [dm3] 2L_2029423_SNP [dm6]	G	A	3.925e^-4	0.82	SPLICE_SITE_REGION CG4238 INTRON CG4238	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16307736	X_16307736_SNP [dm3] X_16413703_SNP [dm6]	G	A	3.934e^-4	0.82	SYNONYMOUS_CODING CG4301
X	9500136	X_9500136_SNP [dm3] X_9606103_SNP [dm6]	G	A	3.936e^-4	0.82	UPSTREAM Lst8 DOWNSTREAM Aats-lys INTERGENIC
3L	2172367	3L_2172367_SNP [dm3] 3L_2172367_SNP [dm6]	G	A	3.941e^-4	0.82	DOWNSTREAM CG15820 EXON CR15821
3L	6735678	3L_6735678_DEL [dm3] 3L_6742578_DEL [dm6]	TT	T	3.949e^-4	0.82	INTRON dikar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	13806944	2R_13806944_SNP [dm3] 2R_17919439_SNP [dm6]	G	A	3.953e^-4	0.82	INTRON Elk
3L	3895590	3L_3895590_SNP [dm3] 3L_3895590_SNP [dm6]	A	C	3.964e^-4	0.82	SYNONYMOUS_CODING Gr63a DOWNSTREAM Fie	TF binding site mE1_TFBS_sens
X	12021524	X_12021524_SNP [dm3] X_12127491_SNP [dm6]	T	C	3.965e^-4	0.82	UPSTREAM Ten-a INTRON Ten-a
3R	24423684	3R_24423684_SNP [dm3] 3R_28597962_SNP [dm6]	T	C	3.972e^-4	0.82	DOWNSTREAM Noa36 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	22013641	2L_22013641_SNP [dm3] 2L_22013641_SNP [dm6]	T	A	3.984e^-4	0.82	INTERGENIC
X	6798329	X_6798329_SNP [dm3] X_6904296_SNP [dm6]	A	G	3.985e^-4	0.82	INTERGENIC
3R	25098994	3R_25098994_SNP [dm3] 3R_29273272_SNP [dm6]	A	C	3.987e^-4	0.82	INTERGENIC	regulatory region REDfly_CRMs
2L	7963032	2L_7963032_SNP [dm3] 2L_7963032_SNP [dm6]	A	G	4.003e^-4	0.82	INTRON Snoo
2L	3973078	2L_3973078_SNP [dm3] 2L_3973078_SNP [dm6]	C	T	4.004e^-4	0.82	INTRON fred
3L	11461222	3L_11461222_SNP [dm3] 3L_11468122_SNP [dm6]	G	C	4.006e^-4	0.82	INTERGENIC
3L	14385314	3L_14385314_DEL [dm3] 3L_14392214_DEL [dm6]	ATAAAAA	A	4.009e^-4	0.82	INTERGENIC
2L	21787136	2L_21787136_SNP [dm3] 2L_21787136_SNP [dm6]	T	C	4.012e^-4	0.82	INTRON CG31612	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1696288	2L_1696288_SNP [dm3] 2L_1696288_SNP [dm6]	A	G	4.013e^-4	0.82	NON_SYNONYMOUS_CODING chinmo UTR_3_PRIME chinmo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16290517	3R_16290517_SNP [dm3] 3R_20464795_SNP [dm6]	T	G	4.019e^-4	0.82	INTRON Gfrl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	12262993	2L_12262993_SNP [dm3] 2L_12262993_SNP [dm6]	T	C	4.019e^-4	0.82	INTRON aret
3L	2172379	3L_2172379_SNP [dm3] 3L_2172379_SNP [dm6]	G	A	4.028e^-4	0.82	DOWNSTREAM CG15820 EXON CR15821
3L	9936741	3L_9936741_SNP [dm3] 3L_9943641_SNP [dm6]	A	C	4.031e^-4	0.82	INTRON CG34356
3R	7276952	3R_7276952_SNP [dm3] 3R_11451230_SNP [dm6]	C	A	4.031e^-4	0.82	UPSTREAM sals INTRON CG17230 & 1 other
X	14843514	X_14843514_SNP [dm3] X_14949481_SNP [dm6]	G	C	4.032e^-4	0.82	INTRON pdgy
3R	18763077	3R_18763077_SNP [dm3] 3R_22937355_SNP [dm6]	A	G	4.038e^-4	0.82	INTRON klg
2L	12886273	2L_12886273_SNP [dm3] 2L_12886273_SNP [dm6]	G	T	4.045e^-4	0.82	INTERGENIC
X	18645748	X_18645748_SNP [dm3] X_18751715_SNP [dm6]	A	G	4.051e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16183712	3R_16183712_SNP [dm3] 3R_20357990_SNP [dm6]	G	T	4.055e^-4	0.82	UPSTREAM CR45023 INTERGENIC
X	14360457	X_14360457_SNP [dm3] X_14466424_SNP [dm6]	T	G	4.055e^-4	0.82	INTERGENIC
3L	11434373	3L_11434373_SNP [dm3] 3L_11441273_SNP [dm6]	A	T	4.055e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	25274069	3R_25274069_SNP [dm3] 3R_29448347_SNP [dm6]	A	G	4.071e^-4	0.82	INTRON Ptp99A
3R	25274077	3R_25274077_SNP [dm3] 3R_29448355_SNP [dm6]	G	A	4.071e^-4	0.82	INTRON Ptp99A
2R	16812840	2R_16812840_SNP [dm3] 2R_20925335_SNP [dm6]	C	G	4.079e^-4	0.82	INTRON Rx
3R	2942395	3R_2942395_SNP [dm3] 3R_7116673_SNP [dm6]	G	A	4.080e^-4	0.82	UTR_5_PRIME Mlp84B INTRON Alh & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5804510	2R_5804510_SNP [dm3] 2R_9917005_SNP [dm6]	C	T	4.080e^-4	0.82	INTRON Mef2	TF binding site mE1_TFBS_cad
X	12019638	X_12019638_SNP [dm3] X_12125605_SNP [dm6]	A	G	4.084e^-4	0.82	INTRON Ten-a
X	13474515	X_13474515_SNP [dm3] X_13580482_SNP [dm6]	T	C	4.101e^-4	0.82	INTRON Tango13
3R	23969408	3R_23969408_SNP [dm3] 3R_28143686_SNP [dm6]	G	A	4.108e^-4	0.82	INTERGENIC
2R	13473143	2R_13473143_SNP [dm3] 2R_17585638_SNP [dm6]	G	T	4.125e^-4	0.82	UTR_3_PRIME CG14483 UPSTREAM CR45275 DOWNSTREAM RhoGAP54D	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	3077080	2R_3077080_INS [dm3] 2R_7189575_INS [dm6]	G	GGCAG	4.127e^-4	0.82	INTRON pk
3L	9178565	3L_9178565_SNP [dm3] 3L_9185465_SNP [dm6]	G	A	4.136e^-4	0.82	INTERGENIC
2L	2441231	2L_2441231_SNP [dm3] 2L_2441231_SNP [dm6]	A	G	4.136e^-4	0.82	INTRON dpp	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18491028	3R_18491028_DEL [dm3] 3R_22665306_DEL [dm6]	AA	A	4.138e^-4	0.82	INTRON CG45058
2R	3079950	2R_3079950_SNP [dm3] 2R_7192445_SNP [dm6]	T	G	4.140e^-4	0.82	INTRON pk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	3186147	X_3186147_SNP [dm3] X_3292114_SNP [dm6]	C	T	4.145e^-4	0.82	INTRON dnc	TF binding site BDTNP1_TFBS_dl
3L	5885675	3L_5885675_SNP [dm3] 3L_5892575_SNP [dm6]	A	T	4.149e^-4	0.82	INTERGENIC
2L	6100300	2L_6100300_SNP [dm3] 2L_6100300_SNP [dm6]	A	G	4.153e^-4	0.82	UPSTREAM stai INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9481182	3L_9481182_INS [dm3] 3L_9488082_INS [dm6]	T	TAAT	4.159e^-4	0.82	UTR_3_PRIME CG32036 UPSTREAM pall	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_zfh1
3L	3266141	3L_3266141_SNP [dm3] 3L_3266141_SNP [dm6]	G	A	4.161e^-4	0.82	INTRON ckd	TF binding site BDTNP1_TFBS_dl
2L	17418395	2L_17418395_SNP [dm3] 2L_17418395_SNP [dm6]	C	A	4.164e^-4	0.82	INTRON Dif	TF binding site mE1_TFBS_cad
3L	5832389	3L_5832389_SNP [dm3] 3L_5839289_SNP [dm6]	G	A	4.168e^-4	0.82	INTRON vn
3L	7484493	3L_7484493_SNP [dm3] 3L_7491393_SNP [dm6]	C	T	4.174e^-4	0.82	UPSTREAM Cyp316a1 INTERGENIC
3R	13215096	3R_13215096_SNP [dm3] 3R_17389374_SNP [dm6]	C	T	4.175e^-4	0.82	UTR_3_PRIME lute INTRON Brf
X	16875167	X_16875167_SNP [dm3] X_16981134_SNP [dm6]	G	A	4.179e^-4	0.82	INTRON CG45002
3L	14236642	3L_14236642_SNP [dm3] 3L_14243542_SNP [dm6]	A	T	4.179e^-4	0.82	INTERGENIC
3R	13049249	3R_13049249_SNP [dm3] 3R_17223527_SNP [dm6]	T	C	4.180e^-4	0.82	UPSTREAM CG31262 INTERGENIC
2R	4501903	2R_4501903_SNP [dm3] 2R_8614398_SNP [dm6]	G	A	4.185e^-4	0.82	UPSTREAM Cirl & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_inv
3L	22029852	3L_22029852_SNP [dm3] 3L_22036752_SNP [dm6]	C	A	4.190e^-4	0.82	INTRON Oct-TyrR
3L	22218551	3L_22218551_SNP [dm3] 3L_22225451_SNP [dm6]	T	C	4.201e^-4	0.82	DOWNSTREAM CR45035 INTRON olf413	TF binding site BDTNP1_TFBS_dl
2L	22134657	2L_22134657_SNP [dm3] 2L_22134657_SNP [dm6]	G	A	4.212e^-4	0.82	UTR_5_PRIME CG42748 INTRON CG42748	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
X	250183	X_250183_SNP [dm3] X_356150_SNP [dm6]	A	G	4.214e^-4	0.82	UPSTREAM y INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
3R	8131703	3R_8131703_SNP [dm3] 3R_12305981_SNP [dm6]	A	T	4.214e^-4	0.82	INTERGENIC
3L	14135306	3L_14135306_SNP [dm3] 3L_14142206_SNP [dm6]	A	G	4.216e^-4	0.82	INTERGENIC	regulatory region REDfly_CRMs
3R	12379769	3R_12379769_SNP [dm3] 3R_16554047_SNP [dm6]	C	G	4.223e^-4	0.82	INTRON CG42342
2R	8360568	2R_8360568_SNP [dm3] 2R_12473063_SNP [dm6]	A	G	4.226e^-4	0.82	SYNONYMOUS_CODING CG8550
3L	9652468	3L_9652468_SNP [dm3] 3L_9659368_SNP [dm6]	T	G	4.232e^-4	0.82	UTR_3_PRIME CG33696 INTRON fry
X	5615886	X_5615886_SNP [dm3] X_5721853_SNP [dm6]	A	T	4.233e^-4	0.82	INTRON CG32758
3R	7356929	3R_7356929_SNP [dm3] 3R_11531207_SNP [dm6]	G	T	4.233e^-4	0.82	INTERGENIC
2L	19239654	2L_19239654_SNP [dm3] 2L_19239654_SNP [dm6]	T	G	4.242e^-4	0.82	INTERGENIC
2R	12176468	2R_12176468_SNP [dm3] 2R_16288963_SNP [dm6]	G	A	4.244e^-4	0.82	UTR_5_PRIME CG30099 UPSTREAM CG30324 & 1 other INTRON CR43730	TF binding site mE1_TFBS_cad
2L	7100403	2L_7100403_SNP [dm3] 2L_7100403_SNP [dm6]	G	A	4.247e^-4	0.82	SYNONYMOUS_CODING Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	14469864	2L_14469864_SNP [dm3] 2L_14469864_SNP [dm6]	C	T	4.249e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	12908881	X_12908881_SNP [dm3] X_13014848_SNP [dm6]	A	C	4.252e^-4	0.82	INTRON rad
2L	22004756	2L_22004756_SNP [dm3] 2L_22004756_SNP [dm6]	G	T	4.253e^-4	0.82	INTERGENIC	transposable element FlyBase
2L	21906159	2L_21906159_DEL [dm3] 2L_21906159_DEL [dm6]	TCGACA	T	4.254e^-4	0.82	UPSTREAM CG1428 INTERGENIC
2L	13949657	2L_13949657_SNP [dm3] 2L_13949657_SNP [dm6]	T	C	4.257e^-4	0.82	INTRON Ance-3	TF binding site mE1_TFBS_sbb
2L	11256463	2L_11256463_SNP [dm3] 2L_11256463_SNP [dm6]	G	T	4.272e^-4	0.82	SYNONYMOUS_CODING ab INTRON ab	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15149782	2L_15149782_SNP [dm3] 2L_15149782_SNP [dm6]	A	C	4.274e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	4745207	X_4745207_SNP [dm3] X_4851174_SNP [dm6]	G	A	4.274e^-4	0.82	INTRON CG42594
X	13920904	X_13920904_SNP [dm3] X_14026871_SNP [dm6]	A	G	4.278e^-4	0.82	INTERGENIC
2R	13596329	2R_13596329_SNP [dm3] 2R_17708824_SNP [dm6]	C	T	4.281e^-4	0.82	UTR_5_PRIME CG6424 INTRON CG6424
X	18645787	X_18645787_DEL [dm3] X_18751754_DEL [dm6]	ATAGGTACAATTATT...	A	4.282e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6931371	3R_6931371_SNP [dm3] 3R_11105649_SNP [dm6]	A	T	4.284e^-4	0.82	INTERGENIC
2R	9183181	2R_9183181_SNP [dm3] 2R_13295676_SNP [dm6]	C	T	4.288e^-4	0.82	START_GAINED Dh31-R UTR_5_PRIME Dh31-R
2R	5846641	2R_5846641_SNP [dm3] 2R_9959136_SNP [dm6]	T	C	4.294e^-4	0.82	UTR_3_PRIME CG15863 UPSTREAM Pal1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	8122545	3R_8122545_SNP [dm3] 3R_12296823_SNP [dm6]	C	A	4.296e^-4	0.82	DOWNSTREAM svp INTRON svp
X	7725085	X_7725085_SNP [dm3] X_7831052_SNP [dm6]	C	G	4.297e^-4	0.82	INTRON CG1402
2R	7069937	2R_7069937_SNP [dm3] 2R_11182432_SNP [dm6]	G	T	4.303e^-4	0.82	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3R	10437715	3R_10437715_SNP [dm3] 3R_14611993_SNP [dm6]	G	C	4.310e^-4	0.82	INTRON CG14853
2L	12261102	2L_12261102_INS [dm3] 2L_12261102_INS [dm6]	T	TC	4.316e^-4	0.82	INTRON aret
3L	3943729	3L_3943729_SNP [dm3] 3L_3943729_SNP [dm6]	T	C	4.324e^-4	0.82	SYNONYMOUS_CODING CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	1194507	3R_1194507_SNP [dm3] 3R_5368785_SNP [dm6]	T	A	4.325e^-4	0.82	UPSTREAM Cerk & 2 others EXON CR44103	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	255546	X_255546_DEL [dm3] X_361513_DEL [dm6]	CC	C	4.328e^-4	0.82	UPSTREAM yar DOWNSTREAM y INTRON CG32816	regulatory region FlyBase REDfly_CRMs
X	15193070	X_15193070_SNP [dm3] X_15299037_SNP [dm6]	G	A	4.332e^-4	0.82	UTR_5_PRIME gce UPSTREAM CR44429 INTRON gce	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2808405	3R_2808405_SNP [dm3] 3R_6982683_SNP [dm6]	T	C	4.335e^-4	0.82	INTRON Antp
3R	7264253	3R_7264253_SNP [dm3] 3R_11438531_SNP [dm6]	G	A	4.336e^-4	0.82	SYNONYMOUS_CODING sals INTRON CG17230	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13588231	2R_13588231_SNP [dm3] 2R_17700726_SNP [dm6]	C	T	4.338e^-4	0.82	UPSTREAM snoRNA:U76:54Eb & 4 others DOWNSTREAM snoRNA:Me28S-A3407a & 3 others INTRON Uhg1
2R	10399241	2R_10399241_DEL [dm3] 2R_14511736_DEL [dm6]	AA	A	4.341e^-4	0.82	UTR_3_PRIME Asx DOWNSTREAM Cpr51A
2L	21906150	2L_21906150_DEL [dm3] 2L_21906150_DEL [dm6]	CACCTCTG	C	4.345e^-4	0.82	UPSTREAM CG1428 INTERGENIC
2L	14907303	2L_14907303_SNP [dm3] 2L_14907303_SNP [dm6]	A	G	4.346e^-4	0.82	DOWNSTREAM CG42313 INTERGENIC
2L	8506422	2L_8506422_SNP [dm3] 2L_8506422_SNP [dm6]	T	C	4.352e^-4	0.82	INTRON Dh31
3L	1489359	3L_1489359_SNP [dm3] 3L_1489359_SNP [dm6]	T	C	4.357e^-4	0.82	DOWNSTREAM CR43701 & 1 other INTRON stet	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12281783	2L_12281783_INS [dm3] 2L_12281783_INS [dm6]	T	TTTGT	4.359e^-4	0.82	INTRON aret
2R	19439532	2R_19439532_SNP [dm3] 2R_23552009_SNP [dm6]	T	A	4.364e^-4	0.82	UPSTREAM pita INTRON pita & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	2604643	3R_2604643_SNP [dm3] 3R_6778921_SNP [dm6]	C	T	4.372e^-4	0.82	INTRON CR42721 EXON CR43435
2L	10984556	2L_10984556_SNP [dm3] 2L_10984556_SNP [dm6]	T	C	4.384e^-4	0.82	INTRON piwi	transposable element FlyBase
2L	12107054	2L_12107054_SNP [dm3] 2L_12107054_SNP [dm6]	T	G	4.385e^-4	0.82	UTR_3_PRIME Aats-thr DOWNSTREAM Rab6 & 1 other
3R	16184329	3R_16184329_SNP [dm3] 3R_20358607_SNP [dm6]	C	G	4.386e^-4	0.82	UPSTREAM CR45023 INTERGENIC
2L	21961819	2L_21961819_SNP [dm3] 2L_21961819_SNP [dm6]	G	A	4.389e^-4	0.82	INTERGENIC
3L	14704887	3L_14704887_SNP [dm3] 3L_14711787_SNP [dm6]	G	C	4.399e^-4	0.82	INTRON ome
3R	24832174	3R_24832174_SNP [dm3] 3R_29006452_SNP [dm6]	G	A	4.414e^-4	0.82	INTRON wat
3R	24832175	3R_24832175_SNP [dm3] 3R_29006453_SNP [dm6]	C	T	4.414e^-4	0.82	INTRON wat
X	6541815	X_6541815_SNP [dm3] X_6647782_SNP [dm6]	A	C	4.417e^-4	0.82	INTRON pigs
3R	18740415	3R_18740415_INS [dm3] 3R_22914693_INS [dm6]	A	AGGCACA	4.421e^-4	0.82	INTRON klg
2R	13108011	2R_13108011_SNP [dm3] 2R_17220506_SNP [dm6]	C	G	4.421e^-4	0.82	INTRON mbl
3R	11836994	3R_11836994_DEL [dm3] 3R_16011272_DEL [dm6]	ATGGTTTTCATATA...	A	4.422e^-4	0.82	UPSTREAM GATAe INTRON GATAe	TF binding site mE1_TFBS_cad
X	14539231	X_14539231_SNP [dm3] X_14645198_SNP [dm6]	C	A	4.425e^-4	0.82	INTRON NetA
3R	16290519	3R_16290519_SNP [dm3] 3R_20464797_SNP [dm6]	G	A	4.429e^-4	0.82	INTRON Gfrl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	10482811	2L_10482811_SNP [dm3] 2L_10482811_SNP [dm6]	A	G	4.430e^-4	0.82	UPSTREAM Grip75 INTRON RluA-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	1611604	3L_1611604_SNP [dm3] 3L_1611604_SNP [dm6]	T	C	4.436e^-4	0.82	SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site mE1_TFBS_chinmo
2L	2886924	2L_2886924_SNP [dm3] 2L_2886924_SNP [dm6]	C	G	4.440e^-4	0.82	INTRON lilli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl mE1_TFBS_zfh1
2L	21879057	2L_21879057_SNP [dm3] 2L_21879057_SNP [dm6]	G	A	4.450e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25872117	3R_25872117_SNP [dm3] 3R_30046395_SNP [dm6]	A	T	4.456e^-4	0.82	UPSTREAM CG7943 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	17539440	3R_17539440_SNP [dm3] 3R_21713718_SNP [dm6]	T	G	4.461e^-4	0.82	INTRON CG31176	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	7247568	3L_7247568_SNP [dm3] 3L_7254468_SNP [dm6]	T	C	4.467e^-4	0.82	INTRON CG14830
2L	12361567	2L_12361567_SNP [dm3] 2L_12361567_SNP [dm6]	C	A	4.467e^-4	0.82	INTRON bru-2	TF binding site BDTNP1_TFBS_twi
3L	4652284	3L_4652284_SNP [dm3] 3L_4652284_SNP [dm6]	T	G	4.474e^-4	0.82	INTRON axo
3L	4061125	3L_4061125_SNP [dm3] 3L_4061125_SNP [dm6]	G	A	4.476e^-4	0.82	NON_SYNONYMOUS_CODING CG18869
2L	6397567	2L_6397567_SNP [dm3] 2L_6397567_SNP [dm6]	T	A	4.478e^-4	0.82	UPSTREAM CG42369 INTRON CG42368
2L	14471556	2L_14471556_SNP [dm3] 2L_14471556_SNP [dm6]	C	G	4.479e^-4	0.82	INTERGENIC
2L	10279109	2L_10279109_SNP [dm3] 2L_10279109_SNP [dm6]	G	A	4.480e^-4	0.82	UTR_3_PRIME CG34043 UPSTREAM Utx	TF binding site BDTNP1_TFBS_dl
3R	6343641	3R_6343641_SNP [dm3] 3R_10517919_SNP [dm6]	A	T	4.485e^-4	0.82	INTRON hth
X	12908402	X_12908402_SNP [dm3] X_13014369_SNP [dm6]	T	A	4.485e^-4	0.82	INTRON rad
2R	12545373	2R_12545373_SNP [dm3] 2R_16657868_SNP [dm6]	A	T	4.492e^-4	0.82	INTRON Picot
X	5321532	X_5321532_SNP [dm3] X_5427499_SNP [dm6]	G	T	4.497e^-4	0.82	UPSTREAM CG16756 & 1 other DOWNSTREAM CG4165 INTERGENIC
X	17062530	X_17062530_SNP [dm3] X_17168497_SNP [dm6]	G	A	4.498e^-4	0.82	INTRON baz
3R	11836983	3R_11836983_SNP [dm3] 3R_16011261_SNP [dm6]	G	C	4.510e^-4	0.82	INTRON GATAe	TF binding site mE1_TFBS_cad
2L	12171953	2L_12171953_SNP [dm3] 2L_12171953_SNP [dm6]	G	C	4.513e^-4	0.82	DOWNSTREAM CG17217 INTRON CG6583	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	24832164	3R_24832164_SNP [dm3] 3R_29006442_SNP [dm6]	C	A	4.514e^-4	0.82	INTRON wat
3L	2294190	3L_2294190_SNP [dm3] 3L_2294190_SNP [dm6]	G	C	4.516e^-4	0.82	INTRON MsR2
2L	7586313	2L_7586313_SNP [dm3] 2L_7586313_SNP [dm6]	G	C	4.517e^-4	0.82	INTERGENIC
3L	1647319	3L_1647319_SNP [dm3] 3L_1647319_SNP [dm6]	T	A	4.518e^-4	0.82	NON_SYNONYMOUS_CODING CG17249 UPSTREAM Bro	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	12077068	3R_12077068_SNP [dm3] 3R_16251346_SNP [dm6]	G	A	4.518e^-4	0.82	INTRON tara	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	1543850	3R_1543850_SNP [dm3] 3R_5718128_SNP [dm6]	C	T	4.521e^-4	0.82	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3L	9127703	3L_9127703_SNP [dm3] 3L_9134603_SNP [dm6]	C	G	4.535e^-4	0.82	UTR_5_PRIME Dhpr UPSTREAM Dhpr & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	20356036	X_20356036_SNP [dm3] X_20485009_SNP [dm6]	A	C	4.547e^-4	0.82	INTRON RhoGAP19D
3R	1244832	3R_1244832_DEL [dm3] 3R_5419110_DEL [dm6]	TCAAATGAGTTTGT...	T	4.550e^-4	0.82	INTRON CG14669
3R	11837053	3R_11837053_SNP [dm3] 3R_16011331_SNP [dm6]	T	G	4.552e^-4	0.82	UPSTREAM GATAe INTRON GATAe	TF binding site mE1_TFBS_cad

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.659e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.01219

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	6.2315	0.0443
In_3R_K	5.6583	0.0591

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2174 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	15299750	3R_15299750_SNP [dm3] 3R_19474028_SNP [dm6]	T	A	1.503e^-6	0.825	INTRON Dys
2L	8809467	2L_8809467_INS [dm3] 2L_8809467_INS [dm6]	C	CC	1.939e^-6	0.825	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2L	21802210	2L_21802210_SNP [dm3] 2L_21802210_SNP [dm6]	G	A	3.131e^-6	0.825	INTERGENIC
2R	3077080	2R_3077080_INS [dm3] 2R_7189575_INS [dm6]	G	GGCAG	3.876e^-6	0.825	INTRON pk
3R	23513340	3R_23513340_SNP [dm3] 3R_27687618_SNP [dm6]	C	T	4.583e^-6	0.825	NON_SYNONYMOUS_CODING CG31055 INTRON CG12880	TF binding site mE1_TFBS_chinmo
2R	8914992	2R_8914992_SNP [dm3] 2R_13027487_SNP [dm6]	T	C	7.187e^-6	0.825	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	901595	2R_901595_INS [dm3] 2R_5014090_INS [dm6]	T	TAT	8.548e^-6	0.825	INTRON Ir41a
2L	21851919	2L_21851919_INS [dm3] 2L_21851919_INS [dm6]	T	TTCT	9.462e^-6	0.825	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	14388983	3R_14388983_SNP [dm3] 3R_18563261_SNP [dm6]	T	A	9.931e^-6	0.825	INTERGENIC
2R	15394517	2R_15394517_SNP [dm3] 2R_19507012_SNP [dm6]	A	G	1.012e^-5	0.825	UPSTREAM tRNA:H:56E INTERGENIC
2R	15394516	2R_15394516_SNP [dm3] 2R_19507011_SNP [dm6]	T	A	1.019e^-5	0.825	UPSTREAM tRNA:H:56E INTERGENIC
2R	16537615	2R_16537615_SNP [dm3] 2R_20650110_SNP [dm6]	A	T	1.092e^-5	0.825	INTRON Lrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	6100946	2L_6100946_SNP [dm3] 2L_6100946_SNP [dm6]	G	A	1.131e^-5	0.825	INTRON stai	TF binding site BDTNP1_TFBS_dl
2L	12274966	2L_12274966_SNP [dm3] 2L_12274966_SNP [dm6]	G	T	1.142e^-5	0.825	INTRON aret
2R	14011624	2R_14011624_SNP [dm3] 2R_18124119_SNP [dm6]	A	G	1.271e^-5	0.825	UPSTREAM stau INTRON stau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10226967	2L_10226967_SNP [dm3] 2L_10226967_SNP [dm6]	A	G	1.273e^-5	0.825	UPSTREAM CG5708 DOWNSTREAM CG5694 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	16989113	3R_16989113_SNP [dm3] 3R_21163391_SNP [dm6]	A	G	1.308e^-5	0.825	UPSTREAM CG5810 INTRON SNF4Agamma
3R	16989117	3R_16989117_SNP [dm3] 3R_21163395_SNP [dm6]	A	T	1.324e^-5	0.825	UPSTREAM CG5810 INTRON SNF4Agamma
2L	12294002	2L_12294002_SNP [dm3] 2L_12294002_SNP [dm6]	C	A	1.326e^-5	0.825	INTRON aret
2R	18453286	2R_18453286_SNP [dm3] 2R_22565781_SNP [dm6]	G	A	1.343e^-5	0.825	SYNONYMOUS_CODING dnr1	TF binding site mE1_TFBS_cad
3R	7278942	3R_7278942_SNP [dm3] 3R_11453220_SNP [dm6]	A	G	1.519e^-5	0.825	SYNONYMOUS_CODING PGRP-LB INTRON CG17230	TF binding site mE1_TFBS_chinmo
3R	7366241	3R_7366241_SNP [dm3] 3R_11540519_SNP [dm6]	A	G	1.565e^-5	0.825	INTRON dpr4
2L	376777	2L_376777_SNP [dm3] 2L_376777_SNP [dm6]	G	A	1.583e^-5	0.825	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	9704731	X_9704731_SNP [dm3] X_9810698_SNP [dm6]	C	A	1.585e^-5	0.825	INTRON CG32698
2L	10226964	2L_10226964_SNP [dm3] 2L_10226964_SNP [dm6]	C	A	1.592e^-5	0.825	UPSTREAM CG5708 DOWNSTREAM CG5694 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	20889987	2R_20889987_INS [dm3] 2R_25002464_INS [dm6]	C	CAGTGTTAGTCTTACTTAAC...	1.625e^-5	0.825	INTRON zip
3R	23519319	3R_23519319_SNP [dm3] 3R_27693597_SNP [dm6]	G	A	1.685e^-5	0.825	UPSTREAM CG43319 DOWNSTREAM CG12880 INTERGENIC
2L	12294007	2L_12294007_SNP [dm3] 2L_12294007_SNP [dm6]	A	C	1.695e^-5	0.825	INTRON aret
2L	21866518	2L_21866518_SNP [dm3] 2L_21866518_SNP [dm6]	A	G	1.800e^-5	0.825	UPSTREAM CR44917 & 1 other DOWNSTREAM CR44919 INTRON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6344151	3R_6344151_SNP [dm3] 3R_10518429_SNP [dm6]	A	T	1.817e^-5	0.825	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6101005	2L_6101005_SNP [dm3] 2L_6101005_SNP [dm6]	A	G	1.832e^-5	0.825	INTRON stai	TF binding site BDTNP1_TFBS_dl
3L	722590	3L_722590_SNP [dm3] 3L_722590_SNP [dm6]	A	T	1.867e^-5	0.825	INTERGENIC
X	17062351	X_17062351_SNP [dm3] X_17168318_SNP [dm6]	T	A	1.898e^-5	0.825	INTRON baz
3R	16295315	3R_16295315_SNP [dm3] 3R_20469593_SNP [dm6]	T	G	1.900e^-5	0.825	INTRON Gfrl
3R	10658738	3R_10658738_SNP [dm3] 3R_14833016_SNP [dm6]	G	C	1.929e^-5	0.825	INTRON btsz
3L	17185722	3L_17185722_SNP [dm3] 3L_17192622_SNP [dm6]	T	A	1.959e^-5	0.825	INTRON Rbp6
2L	8809372	2L_8809372_INS [dm3] 2L_8809372_INS [dm6]	C	CG	1.989e^-5	0.825	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2L	10482563	2L_10482563_SNP [dm3] 2L_10482563_SNP [dm6]	C	A	2.047e^-5	0.825	NON_SYNONYMOUS_CODING RluA-2 UTR_3_PRIME RluA-2 UPSTREAM Grip75	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	3079221	2R_3079221_SNP [dm3] 2R_7191716_SNP [dm6]	C	A	2.164e^-5	0.825	INTRON pk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7831827	3L_7831827_SNP [dm3] 3L_7838727_SNP [dm6]	G	A	2.215e^-5	0.825	INTRON Pdp1	regulatory region REDfly_CRMs
3R	15059154	3R_15059154_SNP [dm3] 3R_19233432_SNP [dm6]	G	A	2.278e^-5	0.825	SYNONYMOUS_CODING unc79
3L	5829494	3L_5829494_SNP [dm3] 3L_5836394_SNP [dm6]	T	A	2.301e^-5	0.825	INTRON vn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA
3R	14388986	3R_14388986_SNP [dm3] 3R_18563264_SNP [dm6]	G	T	2.354e^-5	0.825	DOWNSTREAM CG43210 & 1 other INTERGENIC
3R	7280728	3R_7280728_SNP [dm3] 3R_11455006_SNP [dm6]	T	A	2.385e^-5	0.825	UPSTREAM PGRP-LB INTRON CG17230 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	2885564	2L_2885564_SNP [dm3] 2L_2885564_SNP [dm6]	A	T	2.390e^-5	0.825	UPSTREAM lilli & 1 other INTRON NTPase	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	5805963	2R_5805963_SNP [dm3] 2R_9918458_SNP [dm6]	G	T	2.418e^-5	0.825	INTRON Mef2
2L	15369702	2L_15369702_SNP [dm3] 2L_15369702_SNP [dm6]	G	A	2.451e^-5	0.825	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	14388987	3R_14388987_SNP [dm3] 3R_18563265_SNP [dm6]	C	T	2.532e^-5	0.825	DOWNSTREAM CG43210 & 1 other INTERGENIC
3L	1647129	3L_1647129_SNP [dm3] 3L_1647129_SNP [dm6]	A	G	2.553e^-5	0.825	NON_SYNONYMOUS_CODING CG17249 UPSTREAM Bro	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	12416023	X_12416023_SNP [dm3] X_12521990_SNP [dm6]	C	T	2.565e^-5	0.825	SYNONYMOUS_CODING CG43921 UTR_5_PRIME CG43921	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	19871581	X_19871581_SNP [dm3] X_19977548_SNP [dm6]	T	G	2.605e^-5	0.825	INTERGENIC
2R	18063875	2R_18063875_SNP [dm3] 2R_22176370_SNP [dm6]	G	A	2.606e^-5	0.825	SYNONYMOUS_CODING CG6758 EXON CR45151	TF binding site mE1_TFBS_chinmo
2R	20024364	2R_20024364_SNP [dm3] 2R_24136841_SNP [dm6]	G	T	2.679e^-5	0.825	SYNONYMOUS_CODING CG4065	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10658723	3R_10658723_SNP [dm3] 3R_14833001_SNP [dm6]	T	C	2.738e^-5	0.825	INTRON btsz
3R	6344146	3R_6344146_SNP [dm3] 3R_10518424_SNP [dm6]	T	G	2.752e^-5	0.825	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6347881	3R_6347881_SNP [dm3] 3R_10522159_SNP [dm6]	T	C	2.809e^-5	0.825	INTRON hth
2L	12293940	2L_12293940_SNP [dm3] 2L_12293940_SNP [dm6]	A	C	2.876e^-5	0.825	INTRON aret
2R	3077646	2R_3077646_SNP [dm3] 2R_7190141_SNP [dm6]	T	G	2.906e^-5	0.825	INTRON pk
2L	21879086	2L_21879086_SNP [dm3] 2L_21879086_SNP [dm6]	C	G	2.909e^-5	0.825	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15394537	2R_15394537_SNP [dm3] 2R_19507032_SNP [dm6]	G	C	2.933e^-5	0.825	UPSTREAM tRNA:H:56E INTERGENIC
3L	1646170	3L_1646170_SNP [dm3] 3L_1646170_SNP [dm6]	G	A	2.936e^-5	0.825	SYNONYMOUS_CODING CG17249 UPSTREAM alphaCOP DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	21906159	2L_21906159_DEL [dm3] 2L_21906159_DEL [dm6]	TCGACA	T	2.972e^-5	0.825	UPSTREAM CG1428 INTERGENIC
2L	21906150	2L_21906150_DEL [dm3] 2L_21906150_DEL [dm6]	CACCTCTG	C	2.981e^-5	0.825	UPSTREAM CG1428 INTERGENIC
X	3559838	X_3559838_SNP [dm3] X_3665805_SNP [dm6]	A	T	3.039e^-5	0.825	UTR_3_PRIME AstA-R1
2L	21795611	2L_21795611_SNP [dm3] 2L_21795611_SNP [dm6]	C	G	3.170e^-5	0.825	UPSTREAM CG31612 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
2R	16789215	2R_16789215_SNP [dm3] 2R_20901710_SNP [dm6]	A	C	3.199e^-5	0.825	INTRON otp
2L	10482801	2L_10482801_SNP [dm3] 2L_10482801_SNP [dm6]	A	C	3.237e^-5	0.825	UPSTREAM Grip75 INTRON RluA-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	7484492	3L_7484492_SNP [dm3] 3L_7491392_SNP [dm6]	G	T	3.244e^-5	0.825	UPSTREAM Cyp316a1 INTERGENIC
2R	10578635	2R_10578635_SNP [dm3] 2R_14691130_SNP [dm6]	T	C	3.253e^-5	0.825	INTRON mspo
2L	3997257	2L_3997257_INS [dm3] 2L_3997257_INS [dm6]	T	TGA	3.298e^-5	0.825	INTERGENIC
3L	1647215	3L_1647215_SNP [dm3] 3L_1647215_SNP [dm6]	T	C	3.306e^-5	0.825	SYNONYMOUS_CODING CG17249 UPSTREAM Bro	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	16923357	2R_16923357_SNP [dm3] 2R_21035852_SNP [dm6]	C	T	3.373e^-5	0.825	INTERGENIC
2L	12112048	2L_12112048_SNP [dm3] 2L_12112048_SNP [dm6]	A	T	3.387e^-5	0.825	UTR_3_PRIME Phae2 DOWNSTREAM Phae2	TF binding site mE1_TFBS_cad
2L	7586241	2L_7586241_DEL [dm3] 2L_7586241_DEL [dm6]	GG	G	3.420e^-5	0.825	INTERGENIC
3R	14030411	3R_14030411_SNP [dm3] 3R_18204689_SNP [dm6]	G	A	3.431e^-5	0.825	INTRON CG7985
2L	8809495	2L_8809495_SNP [dm3] 2L_8809495_SNP [dm6]	C	A	3.455e^-5	0.825	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7278969	3R_7278969_SNP [dm3] 3R_11453247_SNP [dm6]	A	G	3.460e^-5	0.825	SYNONYMOUS_CODING PGRP-LB INTRON CG17230	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	718515	3L_718515_SNP [dm3] 3L_718515_SNP [dm6]	A	C	3.491e^-5	0.825	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4120278	3L_4120278_SNP [dm3] 3L_4120278_SNP [dm6]	T	C	3.522e^-5	0.825	INTRON Chd64	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
2R	3008079	2R_3008079_SNP [dm3] 2R_7120574_SNP [dm6]	C	A	3.757e^-5	0.825	SYNONYMOUS_CODING esn
2L	12381038	2L_12381038_SNP [dm3] 2L_12381038_SNP [dm6]	C	G	3.805e^-5	0.825	INTRON bru-2
X	8735244	X_8735244_SNP [dm3] X_8841211_SNP [dm6]	T	G	3.842e^-5	0.825	INTRON CG12075
3R	11857631	3R_11857631_SNP [dm3] 3R_16031909_SNP [dm6]	A	C	3.884e^-5	0.825	INTRON pnr
2R	15895623	2R_15895623_SNP [dm3] 2R_20008118_SNP [dm6]	C	A	3.928e^-5	0.825	DOWNSTREAM CR44628 INTERGENIC
2R	15895632	2R_15895632_SNP [dm3] 2R_20008127_SNP [dm6]	T	G	3.928e^-5	0.825	DOWNSTREAM CR44628 INTERGENIC
2R	17731029	2R_17731029_SNP [dm3] 2R_21843524_SNP [dm6]	A	G	3.957e^-5	0.825	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	390335	3L_390335_SNP [dm3] 3L_390335_SNP [dm6]	C	T	4.074e^-5	0.825	INTRON trh
3R	11857221	3R_11857221_SNP [dm3] 3R_16031499_SNP [dm6]	G	T	4.298e^-5	0.825	INTRON pnr
X	3559747	X_3559747_SNP [dm3] X_3665714_SNP [dm6]	A	G	4.361e^-5	0.825	UTR_3_PRIME AstA-R1
X	8160201	X_8160201_SNP [dm3] X_8266168_SNP [dm6]	A	T	4.376e^-5	0.825	SYNONYMOUS_CODING CG1632	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18740415	3R_18740415_INS [dm3] 3R_22914693_INS [dm6]	A	AGGCACA	4.405e^-5	0.825	INTRON klg
3L	3016342	3L_3016342_SNP [dm3] 3L_3016342_SNP [dm6]	A	G	4.468e^-5	0.825	SYNONYMOUS_CODING CG32487 UPSTREAM CG32488
2R	16923351	2R_16923351_DEL [dm3] 2R_21035846_DEL [dm6]	TT	T	4.530e^-5	0.825	INTERGENIC
2R	20889947	2R_20889947_SNP [dm3] 2R_25002424_SNP [dm6]	A	G	4.531e^-5	0.825	SYNONYMOUS_CODING zip
2R	20024436	2R_20024436_SNP [dm3] 2R_24136913_SNP [dm6]	G	A	4.575e^-5	0.825	SYNONYMOUS_CODING CG4065	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	20404418	2L_20404418_SNP [dm3] 2L_20404418_SNP [dm6]	G	A	4.617e^-5	0.825	INTRON CG10947
3R	16295434	3R_16295434_SNP [dm3] 3R_20469712_SNP [dm6]	C	T	4.670e^-5	0.825	INTRON Gfrl
2L	21805871	2L_21805871_SNP [dm3] 2L_21805871_SNP [dm6]	G	C	4.721e^-5	0.825	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	10915166	3R_10915166_SNP [dm3] 3R_15089444_SNP [dm6]	T	C	4.751e^-5	0.825	INTRON CG6966	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	2922161	2L_2922161_SNP [dm3] 2L_2922161_SNP [dm6]	T	A	4.761e^-5	0.825	INTRON lilli
2L	9570049	2L_9570049_SNP [dm3] 2L_9570049_SNP [dm6]	C	G	4.764e^-5	0.825	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17185719	3L_17185719_DEL [dm3] 3L_17192619_DEL [dm6]	TA	T	4.773e^-5	0.825	INTRON Rbp6
2R	3079481	2R_3079481_SNP [dm3] 2R_7191976_SNP [dm6]	T	G	4.796e^-5	0.825	INTRON pk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18353658	2L_18353658_SNP [dm3] 2L_18353658_SNP [dm6]	A	T	4.946e^-5	0.825	INTRON Fas3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	14488376	X_14488376_SNP [dm3] X_14594343_SNP [dm6]	T	G	4.955e^-5	0.825	INTRON CG9413
3R	7365940	3R_7365940_SNP [dm3] 3R_11540218_SNP [dm6]	C	T	4.964e^-5	0.825	INTRON dpr4
2L	22020494	2L_22020494_SNP [dm3] 2L_22020494_SNP [dm6]	A	G	4.974e^-5	0.825	DOWNSTREAM CR33987 INTRON tio	TF binding site mE1_TFBS_Trl
3L	15633361	3L_15633361_SNP [dm3] 3L_15640261_SNP [dm6]	G	A	5.026e^-5	0.825	INTRON comm3	TF binding site mE1_TFBS_inv
3R	6344147	3R_6344147_SNP [dm3] 3R_10518425_SNP [dm6]	G	T	5.040e^-5	0.825	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14926491	3L_14926491_SNP [dm3] 3L_14933391_SNP [dm6]	T	C	5.132e^-5	0.825	INTRON DCX-EMAP
2L	12078901	2L_12078901_SNP [dm3] 2L_12078901_SNP [dm6]	T	A	5.169e^-5	0.825	UPSTREAM CR44591 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	21846992	2L_21846992_SNP [dm3] 2L_21846992_SNP [dm6]	A	C	5.328e^-5	0.825	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3266110	3L_3266110_SNP [dm3] 3L_3266110_SNP [dm6]	T	C	5.331e^-5	0.825	INTRON ckd	TF binding site BDTNP1_TFBS_dl
2R	3146013	2R_3146013_SNP [dm3] 2R_7258508_SNP [dm6]	C	A	5.343e^-5	0.825	DOWNSTREAM CG1850 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_hkb mE1_TFBS_HSA
3L	539977	3L_539977_SNP [dm3] 3L_539977_SNP [dm6]	C	G	5.357e^-5	0.825	UTR_5_PRIME klar UPSTREAM CG17180	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	15997030	2L_15997030_SNP [dm3] 2L_15997030_SNP [dm6]	C	A	5.439e^-5	0.825	INTERGENIC
3R	19570657	3R_19570657_SNP [dm3] 3R_23744935_SNP [dm6]	A	G	5.511e^-5	0.825	INTRON Hmgcr
3L	14486927	3L_14486927_SNP [dm3] 3L_14493827_SNP [dm6]	G	C	5.560e^-5	0.825	INTRON bbg
X	5069599	X_5069599_INS [dm3] X_5175566_INS [dm6]	A	AACGCAA	5.574e^-5	0.825	CODON_INSERTION CG15465 UTR_5_PRIME rg INTRON rg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12293941	2L_12293941_SNP [dm3] 2L_12293941_SNP [dm6]	T	C	5.755e^-5	0.825	INTRON aret
2R	15895683	2R_15895683_SNP [dm3] 2R_20008178_SNP [dm6]	A	T	5.800e^-5	0.825	DOWNSTREAM CR44628 INTERGENIC
2L	22020382	2L_22020382_SNP [dm3] 2L_22020382_SNP [dm6]	G	T	5.818e^-5	0.825	DOWNSTREAM CR33987 INTRON tio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	7343130	2L_7343130_SNP [dm3] 2L_7343130_SNP [dm6]	G	T	5.849e^-5	0.825	INTRON Wnt6
3R	16986953	3R_16986953_SNP [dm3] 3R_21161231_SNP [dm6]	T	G	5.947e^-5	0.825	UPSTREAM CG10824 INTRON SNF4Agamma
3R	5709131	3R_5709131_SNP [dm3] 3R_9883409_SNP [dm6]	C	G	5.949e^-5	0.825	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15394540	2R_15394540_SNP [dm3] 2R_19507035_SNP [dm6]	G	T	5.950e^-5	0.825	UPSTREAM tRNA:H:56E INTERGENIC
2R	20633538	2R_20633538_SNP [dm3] 2R_24746015_SNP [dm6]	T	A	5.962e^-5	0.825	INTRON CG30421
2R	15895559	2R_15895559_SNP [dm3] 2R_20008054_SNP [dm6]	T	C	5.964e^-5	0.825	DOWNSTREAM CR44628 INTERGENIC
2R	14015164	2R_14015164_SNP [dm3] 2R_18127659_SNP [dm6]	G	C	6.059e^-5	0.825	UPSTREAM Dip3 INTRON Spn55B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2L	12260510	2L_12260510_SNP [dm3] 2L_12260510_SNP [dm6]	T	C	6.104e^-5	0.825	INTRON aret
2R	5805954	2R_5805954_SNP [dm3] 2R_9918449_SNP [dm6]	T	C	6.109e^-5	0.825	INTRON Mef2
2L	9570400	2L_9570400_SNP [dm3] 2L_9570400_SNP [dm6]	A	G	6.113e^-5	0.825	UTR_5_PRIME CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18480164	3R_18480164_SNP [dm3] 3R_22654442_SNP [dm6]	C	T	6.119e^-5	0.825	INTRON CG45058
2L	12204892	2L_12204892_SNP [dm3] 2L_12204892_SNP [dm6]	T	A	6.122e^-5	0.825	UPSTREAM aret INTRON aret
2L	12204893	2L_12204893_SNP [dm3] 2L_12204893_SNP [dm6]	A	G	6.122e^-5	0.825	UPSTREAM aret INTRON aret
X	9500123	X_9500123_SNP [dm3] X_9606090_SNP [dm6]	C	T	6.131e^-5	0.825	UPSTREAM Lst8 DOWNSTREAM Aats-lys INTERGENIC
3L	1315130	3L_1315130_SNP [dm3] 3L_1315130_SNP [dm6]	C	A	6.156e^-5	0.825	SYNONYMOUS_CODING CG9153	TF binding site mE1_TFBS_cad
X	19871664	X_19871664_SNP [dm3] X_19977631_SNP [dm6]	C	G	6.236e^-5	0.825	INTERGENIC
3L	8547757	3L_8547757_SNP [dm3] 3L_8554657_SNP [dm6]	A	T	6.292e^-5	0.825	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7484493	3L_7484493_SNP [dm3] 3L_7491393_SNP [dm6]	C	T	6.314e^-5	0.825	UPSTREAM Cyp316a1 INTERGENIC
X	6489864	X_6489864_SNP [dm3] X_6595831_SNP [dm6]	G	C	6.359e^-5	0.825	UTR_3_PRIME Pat1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16277479	2R_16277479_SNP [dm3] 2R_20389974_SNP [dm6]	A	G	6.418e^-5	0.825	INTERGENIC
2L	12111309	2L_12111309_SNP [dm3] 2L_12111309_SNP [dm6]	T	C	6.510e^-5	0.825	SYNONYMOUS_CODING Phae2 DOWNSTREAM Phae1	TF binding site mE1_TFBS_cad
X	4933967	X_4933967_SNP [dm3] X_5039934_SNP [dm6]	C	A	6.572e^-5	0.825	INTRON CR44833	regulatory region REDfly_CRMs
X	18645733	X_18645733_SNP [dm3] X_18751700_SNP [dm6]	C	A	6.586e^-5	0.825	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5130756	3L_5130756_SNP [dm3] 3L_5137656_SNP [dm6]	G	T	6.610e^-5	0.825	SYNONYMOUS_CODING CG4611 DOWNSTREAM Prpk	TF binding site mE1_TFBS_chinmo
X	17062531	X_17062531_SNP [dm3] X_17168498_SNP [dm6]	G	T	6.688e^-5	0.825	INTRON baz
3L	2317942	3L_2317942_SNP [dm3] 3L_2317942_SNP [dm6]	C	T	6.713e^-5	0.825	UPSTREAM CR45427 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	5805961	2R_5805961_SNP [dm3] 2R_9918456_SNP [dm6]	T	C	6.763e^-5	0.825	INTRON Mef2
3R	2381060	3R_2381060_SNP [dm3] 3R_6555338_SNP [dm6]	C	A	6.780e^-5	0.825	INTRON dpr11
3L	332002	3L_332002_SNP [dm3] 3L_332002_SNP [dm6]	T	A	6.808e^-5	0.825	UTR_5_PRIME mthl9 DOWNSTREAM mthl10 INTRON Ptpmeg	TF binding site mE1_TFBS_Trl
2L	17138834	2L_17138834_DEL [dm3] 2L_17138834_DEL [dm6]	AA	A	6.833e^-5	0.825	INTRON beat-IIIa & 1 other
2L	9571394	2L_9571394_SNP [dm3] 2L_9571394_SNP [dm6]	G	A	6.899e^-5	0.825	UTR_5_PRIME CG3838 INTRON CG3838
3R	19776867	3R_19776867_SNP [dm3] 3R_23951145_SNP [dm6]	G	A	6.902e^-5	0.825	DOWNSTREAM Aats-glupro INTERGENIC
2L	19367828	2L_19367828_SNP [dm3] 2L_19367828_SNP [dm6]	T	G	6.926e^-5	0.825	INTERGENIC
2R	20024266	2R_20024266_SNP [dm3] 2R_24136743_SNP [dm6]	T	G	6.993e^-5	0.825	INTRON CG4065	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8447106	2R_8447106_SNP [dm3] 2R_12559601_SNP [dm6]	A	G	7.023e^-5	0.825	SYNONYMOUS_CODING fra
3L	2172352	3L_2172352_SNP [dm3] 3L_2172352_SNP [dm6]	G	A	7.057e^-5	0.825	DOWNSTREAM CG15820 EXON CR15821
3L	5829568	3L_5829568_SNP [dm3] 3L_5836468_SNP [dm6]	C	T	7.061e^-5	0.825	INTRON vn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15895693	2R_15895693_SNP [dm3] 2R_20008188_SNP [dm6]	A	G	7.138e^-5	0.825	DOWNSTREAM CR44628 INTERGENIC
2L	12293958	2L_12293958_SNP [dm3] 2L_12293958_SNP [dm6]	A	T	7.157e^-5	0.825	INTRON aret
X	9499586	X_9499586_SNP [dm3] X_9605553_SNP [dm6]	T	C	7.160e^-5	0.825	SYNONYMOUS_CODING Lst8 DOWNSTREAM Aats-lys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	1938392	3R_1938392_SNP [dm3] 3R_6112670_SNP [dm6]	A	G	7.216e^-5	0.825	UPSTREAM Obp83g INTERGENIC	regulatory region REDfly_CRMs
2L	9155352	2L_9155352_SNP [dm3] 2L_9155352_SNP [dm6]	G	T	7.216e^-5	0.825	INTRON CG32982
2L	9570147	2L_9570147_INS [dm3] 2L_9570147_INS [dm6]	A	AC	7.274e^-5	0.825	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2899376	2L_2899376_SNP [dm3] 2L_2899376_SNP [dm6]	G	T	7.338e^-5	0.825	INTRON lilli	TF binding site mE1_TFBS_Trl
X	9757069	X_9757069_SNP [dm3] X_9863036_SNP [dm6]	T	A	7.401e^-5	0.825	INTERGENIC
2R	16361229	2R_16361229_SNP [dm3] 2R_20473724_SNP [dm6]	G	T	7.427e^-5	0.825	INTRON CG12484
3R	18480162	3R_18480162_SNP [dm3] 3R_22654440_SNP [dm6]	A	C	7.440e^-5	0.825	INTRON CG45058
3R	25944612	3R_25944612_SNP [dm3] 3R_30118890_SNP [dm6]	T	C	7.521e^-5	0.828	INTRON sima	TF binding site mE1_TFBS_chinmo
2L	8506498	2L_8506498_SNP [dm3] 2L_8506498_SNP [dm6]	A	T	7.659e^-5	0.828	INTRON Dh31
2L	6100997	2L_6100997_SNP [dm3] 2L_6100997_SNP [dm6]	A	T	7.707e^-5	0.828	INTRON stai	TF binding site BDTNP1_TFBS_dl
3R	17823921	3R_17823921_SNP [dm3] 3R_21998199_SNP [dm6]	C	T	7.745e^-5	0.828	INTRON Eip93F
3R	24880062	3R_24880062_SNP [dm3] 3R_29054340_SNP [dm6]	C	A	7.749e^-5	0.828	UPSTREAM CG11843 DOWNSTREAM CG11842 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9756983	X_9756983_SNP [dm3] X_9862950_SNP [dm6]	A	G	7.755e^-5	0.828	INTERGENIC
3R	10914073	3R_10914073_DEL [dm3] 3R_15088351_DEL [dm6]	TT	T	7.855e^-5	0.828	INTRON CG6966
X	17062530	X_17062530_SNP [dm3] X_17168497_SNP [dm6]	G	A	7.864e^-5	0.828	INTRON baz
2L	3129752	2L_3129752_SNP [dm3] 2L_3129752_SNP [dm6]	G	A	7.895e^-5	0.828	DOWNSTREAM CG15403 INTRON toc
2L	9570169	2L_9570169_SNP [dm3] 2L_9570169_SNP [dm6]	A	G	7.910e^-5	0.828	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9570077	2L_9570077_DEL [dm3] 2L_9570077_DEL [dm6]	ATTAATAGTTGA...	A	8.002e^-5	0.833	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	402187	2L_402187_SNP [dm3] 2L_402187_SNP [dm6]	G	A	8.075e^-5	0.833	START_GAINED CG4213 UTR_5_PRIME CG4213 UPSTREAM CG4213	TF binding site mE1_TFBS_Trl
3R	7279083	3R_7279083_SNP [dm3] 3R_11453361_SNP [dm6]	A	C	8.177e^-5	0.833	INTRON CG17230 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2899342	2L_2899342_SNP [dm3] 2L_2899342_SNP [dm6]	A	T	8.310e^-5	0.833	INTRON lilli	TF binding site mE1_TFBS_Trl
2R	14150313	2R_14150313_SNP [dm3] 2R_18262808_SNP [dm6]	C	T	8.381e^-5	0.833	INTERGENIC
2R	12425650	2R_12425650_DEL [dm3] 2R_16538145_DEL [dm6]	TATGCACTTATTGCATGAAT...	T	8.400e^-5	0.833	INTERGENIC
3R	21491476	3R_21491476_SNP [dm3] 3R_25665754_SNP [dm6]	C	A	8.405e^-5	0.833	UPSTREAM Lgr3 DOWNSTREAM RASSF8 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1489098	3L_1489098_SNP [dm3] 3L_1489098_SNP [dm6]	C	T	8.443e^-5	0.833	DOWNSTREAM CR43701 & 1 other INTRON stet	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	13062431	2L_13062431_SNP [dm3] 2L_13062431_SNP [dm6]	G	A	8.537e^-5	0.833	INTERGENIC
3R	16295311	3R_16295311_SNP [dm3] 3R_20469589_SNP [dm6]	T	A	8.559e^-5	0.833	INTRON Gfrl
2L	2899341	2L_2899341_SNP [dm3] 2L_2899341_SNP [dm6]	A	G	8.579e^-5	0.833	INTRON lilli	TF binding site mE1_TFBS_Trl
3L	718514	3L_718514_SNP [dm3] 3L_718514_SNP [dm6]	A	G	8.765e^-5	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10699904	3L_10699904_INS [dm3] 3L_10706804_INS [dm6]	A	AA	8.940e^-5	0.833	INTERGENIC
3L	11461222	3L_11461222_SNP [dm3] 3L_11468122_SNP [dm6]	G	C	9.031e^-5	0.833	INTERGENIC
2L	21929216	2L_21929216_SNP [dm3] 2L_21929216_SNP [dm6]	A	G	9.065e^-5	0.833	INTERGENIC
2L	5901184	2L_5901184_SNP [dm3] 2L_5901184_SNP [dm6]	G	T	9.081e^-5	0.833	UPSTREAM CR44579 INTERGENIC
2R	13994405	2R_13994405_SNP [dm3] 2R_18106900_SNP [dm6]	G	A	9.115e^-5	0.833	INTRON CG5756
2R	14390231	2R_14390231_SNP [dm3] 2R_18502726_SNP [dm6]	A	T	9.120e^-5	0.833	UPSTREAM GstE11 INTERGENIC
3L	8857647	3L_8857647_SNP [dm3] 3L_8864547_SNP [dm6]	A	G	9.195e^-5	0.833	INTRON dally
2L	4046073	2L_4046073_DEL [dm3] 2L_4046073_DEL [dm6]	AA	A	9.273e^-5	0.833	INTRON ed	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9570296	2L_9570296_SNP [dm3] 2L_9570296_SNP [dm6]	A	C	9.285e^-5	0.833	UTR_5_PRIME CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12828595	2R_12828595_SNP [dm3] 2R_16941090_SNP [dm6]	T	G	9.329e^-5	0.833	INTRON Pkc53E
2R	8136809	2R_8136809_SNP [dm3] 2R_12249304_SNP [dm6]	G	T	9.348e^-5	0.833	INTERGENIC
3R	11857220	3R_11857220_SNP [dm3] 3R_16031498_SNP [dm6]	C	T	9.358e^-5	0.833	INTRON pnr
2R	15895651	2R_15895651_SNP [dm3] 2R_20008146_SNP [dm6]	T	A	9.383e^-5	0.833	DOWNSTREAM CR44628 INTERGENIC
2L	2899331	2L_2899331_SNP [dm3] 2L_2899331_SNP [dm6]	C	G	9.395e^-5	0.833	INTRON lilli
2R	5804510	2R_5804510_SNP [dm3] 2R_9917005_SNP [dm6]	C	T	9.407e^-5	0.833	INTRON Mef2	TF binding site mE1_TFBS_cad
3L	722584	3L_722584_SNP [dm3] 3L_722584_SNP [dm6]	T	G	9.598e^-5	0.833	INTERGENIC
3L	355515	3L_355515_SNP [dm3] 3L_355515_SNP [dm6]	C	T	9.720e^-5	0.833	SYNONYMOUS_CODING Ptpmeg UPSTREAM CG1231
2R	17730813	2R_17730813_SNP [dm3] 2R_21843308_SNP [dm6]	T	A	9.998e^-5	0.833	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17625813	2R_17625813_SNP [dm3] 2R_21738308_SNP [dm6]	G	T	1.000e^-4	0.833	INTERGENIC
2L	15996961	2L_15996961_SNP [dm3] 2L_15996961_SNP [dm6]	C	T	1.005e^-4	0.833	INTERGENIC
2R	16866821	2R_16866821_SNP [dm3] 2R_20979316_SNP [dm6]	G	T	1.011e^-4	0.833	UTR_5_PRIME CG9313 UPSTREAM CG9313 & 1 other
X	12163518	X_12163518_SNP [dm3] X_12269485_SNP [dm6]	T	C	1.015e^-4	0.833	INTRON Ten-a
2L	16656744	2L_16656744_MNP [dm3] 2L_16656744_MNP [dm6]	TTT	AAA	1.017e^-4	0.833	UPSTREAM CG42389 INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Ubx
3L	8178778	3L_8178778_SNP [dm3] 3L_8185678_SNP [dm6]	C	T	1.019e^-4	0.833	UPSTREAM ERR INTRON ERR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2L	9570118	2L_9570118_SNP [dm3] 2L_9570118_SNP [dm6]	A	T	1.023e^-4	0.833	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16988813	3R_16988813_SNP [dm3] 3R_21163091_SNP [dm6]	C	G	1.026e^-4	0.833	UPSTREAM CG5810 INTRON SNF4Agamma
2L	12571601	2L_12571601_SNP [dm3] 2L_12571601_SNP [dm6]	G	A	1.041e^-4	0.833	UPSTREAM CR44598 EXON CR44597
2R	13473132	2R_13473132_SNP [dm3] 2R_17585627_SNP [dm6]	A	G	1.046e^-4	0.833	UTR_3_PRIME CG14483 UPSTREAM CR45275 DOWNSTREAM CG14483 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	13473137	2R_13473137_MNP [dm3] 2R_17585632_MNP [dm6]	TTT	ACA	1.046e^-4	0.833	UTR_3_PRIME CG14483 UPSTREAM CR45275 DOWNSTREAM CG14483 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	13473140	2R_13473140_DEL [dm3] 2R_17585635_DEL [dm6]	CC	C	1.046e^-4	0.833	UTR_3_PRIME CG14483 UPSTREAM CR45275 DOWNSTREAM RhoGAP54D	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	13473146	2R_13473146_MNP [dm3] 2R_17585641_MNP [dm6]	GATT	CGGG	1.046e^-4	0.833	UTR_3_PRIME CG14483 UPSTREAM CR45275 DOWNSTREAM RhoGAP54D	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	21917165	2L_21917165_SNP [dm3] 2L_21917165_SNP [dm6]	A	C	1.047e^-4	0.833	NON_SYNONYMOUS_CODING CG11634	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13806936	2R_13806936_SNP [dm3] 2R_17919431_SNP [dm6]	G	T	1.061e^-4	0.833	INTRON Elk
3R	12077068	3R_12077068_SNP [dm3] 3R_16251346_SNP [dm6]	G	A	1.062e^-4	0.833	INTRON tara	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17730905	2R_17730905_INS [dm3] 2R_21843400_INS [dm6]	A	ATA	1.065e^-4	0.833	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	21879057	2L_21879057_SNP [dm3] 2L_21879057_SNP [dm6]	G	A	1.075e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	3261289	2R_3261289_SNP [dm3] 2R_7373784_SNP [dm6]	T	A	1.076e^-4	0.833	INTRON Dscam1	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	19024736	3L_19024736_SNP [dm3] 3L_19031636_SNP [dm6]	G	T	1.076e^-4	0.833	INTRON nkd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8320120	X_8320120_SNP [dm3] X_8426087_SNP [dm6]	C	A	1.089e^-4	0.833	NON_SYNONYMOUS_CODING Trf2 UTR_5_PRIME Trf2	TF binding site mE1_TFBS_HSA
3R	10915315	3R_10915315_SNP [dm3] 3R_15089593_SNP [dm6]	T	C	1.098e^-4	0.833	INTRON CG6966	TF binding site mE1_TFBS_Trl
2R	8137678	2R_8137678_SNP [dm3] 2R_12250173_SNP [dm6]	T	C	1.098e^-4	0.833	INTERGENIC
2R	13397936	2R_13397936_SNP [dm3] 2R_17510431_SNP [dm6]	A	G	1.101e^-4	0.833	UTR_3_PRIME CG34193
2R	20355319	2R_20355319_SNP [dm3] 2R_24467796_SNP [dm6]	T	C	1.103e^-4	0.833	INTRON CG13579
2L	12153477	2L_12153477_SNP [dm3] 2L_12153477_SNP [dm6]	G	C	1.104e^-4	0.833	INTRON CG31760
3L	4018943	3L_4018943_SNP [dm3] 3L_4018943_SNP [dm6]	A	T	1.106e^-4	0.833	UTR_5_PRIME fd64A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14615291	3R_14615291_SNP [dm3] 3R_18789569_SNP [dm6]	A	C	1.109e^-4	0.833	INTRON CG7720	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	4094790	X_4094790_SNP [dm3] X_4200757_SNP [dm6]	T	C	1.115e^-4	0.833	INTRON Fas2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	20404415	2L_20404415_DEL [dm3] 2L_20404415_DEL [dm6]	GA	G	1.116e^-4	0.833	INTRON CG10947
2R	12545177	2R_12545177_SNP [dm3] 2R_16657672_SNP [dm6]	C	T	1.121e^-4	0.833	INTRON Picot
2R	17030654	2R_17030654_SNP [dm3] 2R_21143149_SNP [dm6]	A	C	1.122e^-4	0.833	SYNONYMOUS_CODING CG9406 UPSTREAM Magi & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	15281434	X_15281434_SNP [dm3] X_15387401_SNP [dm6]	A	G	1.128e^-4	0.833	UTR_3_PRIME Cngl
3R	5899901	3R_5899901_SNP [dm3] 3R_10074179_SNP [dm6]	A	C	1.130e^-4	0.833	SYNONYMOUS_CODING CG5361 DOWNSTREAM nerfin-2
X	19871890	X_19871890_SNP [dm3] X_19977857_SNP [dm6]	C	T	1.132e^-4	0.833	INTERGENIC
X	18645744	X_18645744_SNP [dm3] X_18751711_SNP [dm6]	G	A	1.135e^-4	0.833	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16957088	2L_16957088_SNP [dm3] 2L_16957088_SNP [dm6]	T	C	1.138e^-4	0.833	INTERGENIC
X	17048771	X_17048771_SNP [dm3] X_17154738_SNP [dm6]	T	C	1.145e^-4	0.833	UTR_3_PRIME xmas-2 UPSTREAM xmas-1
2L	6100998	2L_6100998_INS [dm3] 2L_6100998_INS [dm6]	T	TATG	1.146e^-4	0.833	INTRON stai	TF binding site BDTNP1_TFBS_dl
2L	9570185	2L_9570185_SNP [dm3] 2L_9570185_SNP [dm6]	A	C	1.150e^-4	0.833	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18645723	X_18645723_SNP [dm3] X_18751690_SNP [dm6]	A	G	1.150e^-4	0.833	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19869871	X_19869871_SNP [dm3] X_19975838_SNP [dm6]	C	T	1.158e^-4	0.833	INTERGENIC
2L	4015838	2L_4015838_SNP [dm3] 2L_4015838_SNP [dm6]	C	T	1.160e^-4	0.833	INTERGENIC
3L	7278223	3L_7278223_SNP [dm3] 3L_7285123_SNP [dm6]	T	G	1.160e^-4	0.833	UTR_5_PRIME unc-13-4A	TF binding site mE1_TFBS_cad
2R	19822999	2R_19822999_SNP [dm3] 2R_23935476_SNP [dm6]	G	T	1.167e^-4	0.833	INTRON Ca-P60A
X	9498848	X_9498848_SNP [dm3] X_9604815_SNP [dm6]	G	A	1.171e^-4	0.833	UTR_3_PRIME Lst8 DOWNSTREAM Gga
X	9498923	X_9498923_SNP [dm3] X_9604890_SNP [dm6]	G	A	1.171e^-4	0.833	SYNONYMOUS_CODING Lst8 DOWNSTREAM Gga
3R	26276368	3R_26276368_SNP [dm3] 3R_30450646_SNP [dm6]	T	A	1.171e^-4	0.833	UPSTREAM aralar1 INTRON aralar1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	229459	X_229459_SNP [dm3] X_335426_SNP [dm6]	A	G	1.180e^-4	0.833	UPSTREAM CG32816 INTRON CG3777 & 1 other
3R	6343641	3R_6343641_SNP [dm3] 3R_10517919_SNP [dm6]	A	T	1.196e^-4	0.833	INTRON hth
2L	12148371	2L_12148371_SNP [dm3] 2L_12148371_SNP [dm6]	T	A	1.202e^-4	0.833	INTRON CG31760
3R	24090091	3R_24090091_SNP [dm3] 3R_28264369_SNP [dm6]	A	G	1.214e^-4	0.833	NON_SYNONYMOUS_CODING CG43124 UPSTREAM CG43125
3R	21675880	3R_21675880_SNP [dm3] 3R_25850158_SNP [dm6]	A	G	1.218e^-4	0.833	DOWNSTREAM CG14545 INTERGENIC
2R	18456709	2R_18456709_SNP [dm3] 2R_22569204_SNP [dm6]	G	A	1.220e^-4	0.833	INTRON dnr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	14388538	3R_14388538_SNP [dm3] 3R_18562816_SNP [dm6]	G	C	1.225e^-4	0.833	INTERGENIC
2R	3261295	2R_3261295_SNP [dm3] 2R_7373790_SNP [dm6]	C	T	1.226e^-4	0.833	INTRON Dscam1	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	21929390	2L_21929390_SNP [dm3] 2L_21929390_SNP [dm6]	G	C	1.228e^-4	0.833	UPSTREAM CR45334 INTERGENIC
2R	11575928	2R_11575928_SNP [dm3] 2R_15688423_SNP [dm6]	T	C	1.228e^-4	0.833	SYNONYMOUS_CODING Cep89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14616564	3R_14616564_SNP [dm3] 3R_18790842_SNP [dm6]	T	C	1.245e^-4	0.833	INTRON CG7720
3L	7484565	3L_7484565_SNP [dm3] 3L_7491465_SNP [dm6]	G	C	1.246e^-4	0.833	UPSTREAM Cyp316a1 INTERGENIC
2R	13807055	2R_13807055_SNP [dm3] 2R_17919550_SNP [dm6]	G	A	1.263e^-4	0.833	INTRON Elk
2R	20022612	2R_20022612_SNP [dm3] 2R_24135089_SNP [dm6]	T	C	1.267e^-4	0.833	SYNONYMOUS_CODING Zfrp8 DOWNSTREAM CG4065
2L	22101542	2L_22101542_SNP [dm3] 2L_22101542_SNP [dm6]	A	C	1.270e^-4	0.833	INTERGENIC
2R	18456185	2R_18456185_DEL [dm3] 2R_22568680_DEL [dm6]	CTATTATTG	A	1.271e^-4	0.833	INTRON dnr1	TF binding site mE1_TFBS_Trl
3R	14616583	3R_14616583_SNP [dm3] 3R_18790861_SNP [dm6]	G	T	1.272e^-4	0.833	INTRON CG7720
2L	22098331	2L_22098331_SNP [dm3] 2L_22098331_SNP [dm6]	T	A	1.274e^-4	0.833	INTERGENIC
2L	10482811	2L_10482811_SNP [dm3] 2L_10482811_SNP [dm6]	A	G	1.274e^-4	0.833	UPSTREAM Grip75 INTRON RluA-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	10940970	3R_10940970_SNP [dm3] 3R_15115248_SNP [dm6]	G	T	1.276e^-4	0.833	INTRON CG42788
X	17078271	X_17078271_SNP [dm3] X_17184238_SNP [dm6]	T	C	1.277e^-4	0.833	UPSTREAM CR44026 INTRON baz
2R	13473135	2R_13473135_SNP [dm3] 2R_17585630_SNP [dm6]	T	A	1.308e^-4	0.833	UTR_3_PRIME CG14483 UPSTREAM CR45275 DOWNSTREAM CG14483 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	13473151	2R_13473151_SNP [dm3] 2R_17585646_SNP [dm6]	A	T	1.308e^-4	0.833	UTR_3_PRIME CG14483 UPSTREAM CR45275 DOWNSTREAM RhoGAP54D	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	19870082	X_19870082_DEL [dm3] X_19976049_DEL [dm6]	TTTGT	T	1.319e^-4	0.833	INTERGENIC
X	19873194	X_19873194_INS [dm3] X_19979161_INS [dm6]	T	TT	1.319e^-4	0.833	INTERGENIC
X	18645720	X_18645720_SNP [dm3] X_18751687_SNP [dm6]	A	G	1.320e^-4	0.833	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5796892	2L_5796892_SNP [dm3] 2L_5796892_SNP [dm6]	C	A	1.321e^-4	0.833	INTRON CG9171
2R	11724772	2R_11724772_SNP [dm3] 2R_15837267_SNP [dm6]	C	T	1.321e^-4	0.833	INTRON tun	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	8203792	2L_8203792_SNP [dm3] 2L_8203792_SNP [dm6]	G	A	1.325e^-4	0.833	INTRON CR44119 & 1 other
X	7064106	X_7064106_SNP [dm3] X_7170073_SNP [dm6]	A	T	1.327e^-4	0.833	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3L	2294190	3L_2294190_SNP [dm3] 3L_2294190_SNP [dm6]	G	C	1.348e^-4	0.833	INTRON MsR2
X	9756967	X_9756967_SNP [dm3] X_9862934_SNP [dm6]	G	A	1.350e^-4	0.833	INTERGENIC
3L	4652284	3L_4652284_SNP [dm3] 3L_4652284_SNP [dm6]	T	G	1.357e^-4	0.833	INTRON axo
3L	1306890	3L_1306890_SNP [dm3] 3L_1306890_SNP [dm6]	A	C	1.359e^-4	0.833	SYNONYMOUS_CODING CG2277 UPSTREAM CG2469	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21876370	3R_21876370_SNP [dm3] 3R_26050648_SNP [dm6]	T	G	1.359e^-4	0.833	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15766383	2L_15766383_SNP [dm3] 2L_15766383_SNP [dm6]	T	C	1.361e^-4	0.833	UTR_3_PRIME wek DOWNSTREAM wek & 1 other	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA
3R	25136363	3R_25136363_SNP [dm3] 3R_29310641_SNP [dm6]	C	A	1.362e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	16866650	2R_16866650_SNP [dm3] 2R_20979145_SNP [dm6]	A	T	1.364e^-4	0.833	START_GAINED CG9313 UTR_5_PRIME CG9313 UPSTREAM CG15650 & 1 other
2L	12154018	2L_12154018_SNP [dm3] 2L_12154018_SNP [dm6]	T	A	1.373e^-4	0.833	INTRON CG31760
3L	7138315	3L_7138315_SNP [dm3] 3L_7145215_SNP [dm6]	G	A	1.379e^-4	0.833	INTRON corn
2R	3261291	2R_3261291_SNP [dm3] 2R_7373786_SNP [dm6]	A	T	1.389e^-4	0.833	INTRON Dscam1	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15633560	3L_15633560_SNP [dm3] 3L_15640460_SNP [dm6]	C	G	1.395e^-4	0.833	INTRON comm3	TF binding site mE1_TFBS_hkb
2R	3662956	2R_3662956_SNP [dm3] 2R_7775451_SNP [dm6]	A	T	1.402e^-4	0.833	INTRON CG30497 & 1 other
2L	357751	2L_357751_SNP [dm3] 2L_357751_SNP [dm6]	G	C	1.405e^-4	0.833	SPLICE_SITE_REGION Ent1 UTR_5_PRIME Ent1 DOWNSTREAM CR45367 INTRON Ent1 EXON CR45366	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	10919188	3R_10919188_SNP [dm3] 3R_15093466_SNP [dm6]	C	T	1.408e^-4	0.833	INTRON CG6966	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	19373097	2L_19373097_SNP [dm3] 2L_19373097_SNP [dm6]	A	G	1.414e^-4	0.833	DOWNSTREAM CG17349 INTERGENIC
2R	15902342	2R_15902342_SNP [dm3] 2R_20014837_SNP [dm6]	A	G	1.414e^-4	0.833	DOWNSTREAM CR44629 INTERGENIC
3R	10914897	3R_10914897_SNP [dm3] 3R_15089175_SNP [dm6]	C	T	1.423e^-4	0.833	INTRON CG6966	TF binding site mE1_TFBS_Trl
3R	1156820	3R_1156820_INS [dm3] 3R_5331098_INS [dm6]	A	AA	1.435e^-4	0.833	INTRON mtd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	19872480	X_19872480_SNP [dm3] X_19978447_SNP [dm6]	A	T	1.435e^-4	0.833	INTERGENIC
3R	6344012	3R_6344012_SNP [dm3] 3R_10518290_SNP [dm6]	C	G	1.442e^-4	0.833	INTRON hth	TF binding site BDTNP1_TFBS_dl
2R	16277480	2R_16277480_SNP [dm3] 2R_20389975_SNP [dm6]	G	T	1.443e^-4	0.833	INTERGENIC
3L	12522474	3L_12522474_SNP [dm3] 3L_12529374_SNP [dm6]	C	A	1.448e^-4	0.833	INTRON nst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
2R	14341020	2R_14341020_SNP [dm3] 2R_18453515_SNP [dm6]	C	A	1.450e^-4	0.833	SYNONYMOUS_CODING CG17669 DOWNSTREAM CG5190	TF binding site mE1_TFBS_cad
2L	17418395	2L_17418395_SNP [dm3] 2L_17418395_SNP [dm6]	C	A	1.451e^-4	0.833	INTRON Dif	TF binding site mE1_TFBS_cad
2L	8782974	2L_8782974_SNP [dm3] 2L_8782974_SNP [dm6]	G	A	1.452e^-4	0.833	UPSTREAM CG42710 INTERGENIC
2L	21962090	2L_21962090_SNP [dm3] 2L_21962090_SNP [dm6]	A	G	1.457e^-4	0.833	INTERGENIC
3L	1645303	3L_1645303_SNP [dm3] 3L_1645303_SNP [dm6]	A	T	1.464e^-4	0.833	UPSTREAM CG13919 & 1 other DOWNSTREAM CG17249 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13473143	2R_13473143_SNP [dm3] 2R_17585638_SNP [dm6]	G	T	1.475e^-4	0.833	UTR_3_PRIME CG14483 UPSTREAM CR45275 DOWNSTREAM RhoGAP54D	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	10657294	3R_10657294_SNP [dm3] 3R_14831572_SNP [dm6]	G	A	1.498e^-4	0.833	INTRON btsz
X	13692221	X_13692221_SNP [dm3] X_13798188_SNP [dm6]	C	A	1.503e^-4	0.833	UPSTREAM CG10996 INTRON inaE
2R	11327929	2R_11327929_SNP [dm3] 2R_15440424_SNP [dm6]	G	T	1.509e^-4	0.833	INTRON CG43729
3L	4214680	3L_4214680_SNP [dm3] 3L_4214680_SNP [dm6]	G	A	1.512e^-4	0.833	UPSTREAM Cpr64Ad INTRON CG43367
2R	8446969	2R_8446969_SNP [dm3] 2R_12559464_SNP [dm6]	C	A	1.515e^-4	0.833	INTRON fra
2R	16361205	2R_16361205_SNP [dm3] 2R_20473700_SNP [dm6]	T	G	1.521e^-4	0.833	INTRON CG12484
3L	1206154	3L_1206154_SNP [dm3] 3L_1206154_SNP [dm6]	C	T	1.527e^-4	0.833	SYNONYMOUS_CODING mwh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12205324	2L_12205324_SNP [dm3] 2L_12205324_SNP [dm6]	C	T	1.533e^-4	0.833	UPSTREAM aret INTRON aret
2L	8807137	2L_8807137_SNP [dm3] 2L_8807137_SNP [dm6]	T	C	1.535e^-4	0.833	INTERGENIC
2R	5801771	2R_5801771_SNP [dm3] 2R_9914266_SNP [dm6]	T	A	1.542e^-4	0.833	UTR_3_PRIME Mef2 DOWNSTREAM Etf-QO
2L	6100966	2L_6100966_SNP [dm3] 2L_6100966_SNP [dm6]	C	A	1.555e^-4	0.833	INTRON stai	TF binding site BDTNP1_TFBS_dl
2L	15938607	2L_15938607_SNP [dm3] 2L_15938607_SNP [dm6]	C	T	1.559e^-4	0.833	INTRON beat-Ib
X	8527141	X_8527141_SNP [dm3] X_8633108_SNP [dm6]	C	T	1.569e^-4	0.833	SYNONYMOUS_CODING oc	TF binding site mE1_TFBS_chinmo
3R	7347881	3R_7347881_SNP [dm3] 3R_11522159_SNP [dm6]	C	T	1.584e^-4	0.833	INTERGENIC
X	18645729	X_18645729_SNP [dm3] X_18751696_SNP [dm6]	T	A	1.585e^-4	0.833	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19873199	X_19873199_INS [dm3] X_19979166_INS [dm6]	T	TCTGTAGTT	1.586e^-4	0.833	INTERGENIC
3L	10610526	3L_10610526_SNP [dm3] 3L_10617426_SNP [dm6]	C	G	1.595e^-4	0.833	INTERGENIC
3R	7278960	3R_7278960_SNP [dm3] 3R_11453238_SNP [dm6]	G	A	1.596e^-4	0.833	SYNONYMOUS_CODING PGRP-LB INTRON CG17230	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1645300	3L_1645300_SNP [dm3] 3L_1645300_SNP [dm6]	A	T	1.602e^-4	0.833	UPSTREAM CG13919 & 1 other DOWNSTREAM CG17249 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1645305	3L_1645305_SNP [dm3] 3L_1645305_SNP [dm6]	G	C	1.602e^-4	0.833	UPSTREAM CG13919 & 1 other DOWNSTREAM CG17249 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1645306	3L_1645306_SNP [dm3] 3L_1645306_SNP [dm6]	C	T	1.602e^-4	0.833	UPSTREAM CG13919 & 1 other DOWNSTREAM CG17249 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1645311	3L_1645311_DEL [dm3] 3L_1645311_DEL [dm6]	CA	C	1.602e^-4	0.833	UPSTREAM CG13919 & 1 other DOWNSTREAM CG17249 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	10210786	X_10210786_SNP [dm3] X_10316753_SNP [dm6]	A	T	1.605e^-4	0.833	INTRON alpha-Man-I
2L	14390199	2L_14390199_SNP [dm3] 2L_14390199_SNP [dm6]	G	A	1.611e^-4	0.833	DOWNSTREAM elB INTERGENIC
2R	10379540	2R_10379540_SNP [dm3] 2R_14492035_SNP [dm6]	C	T	1.616e^-4	0.833	INTRON L
2L	21794158	2L_21794158_INS [dm3] 2L_21794158_INS [dm6]	G	AATAATATGT	1.617e^-4	0.833	INTRON CG31612	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	11857592	3R_11857592_SNP [dm3] 3R_16031870_SNP [dm6]	A	T	1.619e^-4	0.833	INTRON pnr
3R	7281547	3R_7281547_SNP [dm3] 3R_11455825_SNP [dm6]	G	A	1.637e^-4	0.833	INTRON CG17230 & 1 other
3R	14389035	3R_14389035_SNP [dm3] 3R_18563313_SNP [dm6]	T	C	1.639e^-4	0.833	DOWNSTREAM CG43210 & 1 other INTERGENIC
3L	14483794	3L_14483794_SNP [dm3] 3L_14490694_SNP [dm6]	C	T	1.648e^-4	0.833	INTRON bbg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	3016225	3L_3016225_SNP [dm3] 3L_3016225_SNP [dm6]	A	T	1.651e^-4	0.833	SYNONYMOUS_CODING CG32487 UPSTREAM CG32488
2L	12154041	2L_12154041_SNP [dm3] 2L_12154041_SNP [dm6]	A	T	1.652e^-4	0.833	INTRON CG31760
2L	14455718	2L_14455718_SNP [dm3] 2L_14455718_SNP [dm6]	G	A	1.656e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3R	1324646	3R_1324646_SNP [dm3] 3R_5498924_SNP [dm6]	C	A	1.671e^-4	0.833	INTRON CG31547
3R	7353515	3R_7353515_SNP [dm3] 3R_11527793_SNP [dm6]	T	A	1.672e^-4	0.833	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16294815	3R_16294815_SNP [dm3] 3R_20469093_SNP [dm6]	G	A	1.675e^-4	0.833	INTRON Gfrl
2R	11477209	2R_11477209_INS [dm3] 2R_15589704_INS [dm6]	A	ACATACATA	1.683e^-4	0.833	INTERGENIC
2L	18871899	2L_18871899_SNP [dm3] 2L_18871899_SNP [dm6]	T	C	1.684e^-4	0.833	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14616571	3R_14616571_SNP [dm3] 3R_18790849_SNP [dm6]	T	C	1.696e^-4	0.833	INTRON CG7720
3R	11857068	3R_11857068_SNP [dm3] 3R_16031346_SNP [dm6]	T	G	1.698e^-4	0.833	INTRON pnr
2R	8137681	2R_8137681_SNP [dm3] 2R_12250176_SNP [dm6]	A	C	1.700e^-4	0.833	INTERGENIC
3L	18112916	3L_18112916_SNP [dm3] 3L_18119816_SNP [dm6]	A	C	1.706e^-4	0.833	UTR_5_PRIME CG7341 DOWNSTREAM CG32195	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20413777	3R_20413777_SNP [dm3] 3R_24588055_SNP [dm6]	C	G	1.706e^-4	0.833	INTRON mld	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	7611488	X_7611488_SNP [dm3] X_7717455_SNP [dm6]	C	T	1.707e^-4	0.833	INTRON CG15478
3L	9202302	3L_9202302_SNP [dm3] 3L_9209202_SNP [dm6]	T	G	1.711e^-4	0.833	UPSTREAM Slc45-1 INTERGENIC
X	3559892	X_3559892_SNP [dm3] X_3665859_SNP [dm6]	C	T	1.716e^-4	0.833	UTR_3_PRIME AstA-R1
2R	16517967	2R_16517967_SNP [dm3] 2R_20630462_SNP [dm6]	G	C	1.718e^-4	0.833	INTRON Rcd6
2R	18493463	2R_18493463_SNP [dm3] 2R_22605958_SNP [dm6]	C	T	1.718e^-4	0.833	UPSTREAM RpS16 & 2 others INTRON RpS16	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	15041595	3R_15041595_SNP [dm3] 3R_19215873_SNP [dm6]	T	A	1.722e^-4	0.833	UTR_3_PRIME vib DOWNSTREAM cry
2L	12112873	2L_12112873_SNP [dm3] 2L_12112873_SNP [dm6]	G	T	1.726e^-4	0.833	DOWNSTREAM Phae2 INTERGENIC
2R	3261315	2R_3261315_SNP [dm3] 2R_7373810_SNP [dm6]	A	G	1.728e^-4	0.833	INTRON Dscam1	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8547231	3L_8547231_SNP [dm3] 3L_8554131_SNP [dm6]	C	A	1.731e^-4	0.833	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7617231	2R_7617231_SNP [dm3] 2R_11729726_SNP [dm6]	G	C	1.731e^-4	0.833	INTERGENIC
3R	9409835	3R_9409835_SNP [dm3] 3R_13584113_SNP [dm6]	T	A	1.733e^-4	0.833	INTERGENIC
2R	7064146	2R_7064146_SNP [dm3] 2R_11176641_SNP [dm6]	T	C	1.736e^-4	0.833	INTRON shn
2L	2899377	2L_2899377_SNP [dm3] 2L_2899377_SNP [dm6]	C	A	1.736e^-4	0.833	INTRON lilli	TF binding site mE1_TFBS_Trl
2R	7064099	2R_7064099_SNP [dm3] 2R_11176594_SNP [dm6]	A	T	1.736e^-4	0.833	INTRON shn
2L	11256463	2L_11256463_SNP [dm3] 2L_11256463_SNP [dm6]	G	T	1.742e^-4	0.833	SYNONYMOUS_CODING ab INTRON ab	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26276442	3R_26276442_SNP [dm3] 3R_30450720_SNP [dm6]	G	A	1.745e^-4	0.833	UPSTREAM aralar1 INTRON aralar1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	12111720	2L_12111720_SNP [dm3] 2L_12111720_SNP [dm6]	T	A	1.753e^-4	0.833	SYNONYMOUS_CODING Phae2	TF binding site mE1_TFBS_cad
3R	14389108	3R_14389108_SNP [dm3] 3R_18563386_SNP [dm6]	A	C	1.754e^-4	0.833	DOWNSTREAM CG43210 & 1 other INTERGENIC
3R	23519269	3R_23519269_SNP [dm3] 3R_27693547_SNP [dm6]	G	A	1.754e^-4	0.833	UPSTREAM CG43319 DOWNSTREAM CG12880 INTERGENIC
2L	19315003	2L_19315003_SNP [dm3] 2L_19315003_SNP [dm6]	A	G	1.761e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18645726	X_18645726_SNP [dm3] X_18751693_SNP [dm6]	T	C	1.762e^-4	0.833	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8233448	3L_8233448_SNP [dm3] 3L_8240348_SNP [dm6]	T	G	1.763e^-4	0.833	NON_SYNONYMOUS_CODING CG7213 UPSTREAM Dscam4 INTRON Dscam4
3R	5695423	3R_5695423_SNP [dm3] 3R_9869701_SNP [dm6]	T	C	1.772e^-4	0.833	INTERGENIC
3L	1561196	3L_1561196_SNP [dm3] 3L_1561196_SNP [dm6]	G	T	1.776e^-4	0.833	NON_SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	1306962	3L_1306962_SNP [dm3] 3L_1306962_SNP [dm6]	T	C	1.780e^-4	0.833	SYNONYMOUS_CODING CG2277 UPSTREAM CG2469	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14615289	3R_14615289_SNP [dm3] 3R_18789567_SNP [dm6]	G	A	1.782e^-4	0.833	INTRON CG7720	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2007662	3L_2007662_SNP [dm3] 3L_2007662_SNP [dm6]	G	C	1.785e^-4	0.833	INTERGENIC
2R	3874793	2R_3874793_SNP [dm3] 2R_7987288_SNP [dm6]	A	C	1.786e^-4	0.833	UPSTREAM ACC INTRON ACC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	8587669	3R_8587669_SNP [dm3] 3R_12761947_SNP [dm6]	G	C	1.786e^-4	0.833	INTRON beat-Vc
2R	11327910	2R_11327910_SNP [dm3] 2R_15440405_SNP [dm6]	T	C	1.802e^-4	0.833	INTRON CG43729
2R	9163395	2R_9163395_SNP [dm3] 2R_13275890_SNP [dm6]	G	A	1.803e^-4	0.833	INTRON Dh31-R
3R	13502661	3R_13502661_SNP [dm3] 3R_17676939_SNP [dm6]	A	G	1.808e^-4	0.833	SYNONYMOUS_CODING alt	TF binding site mE1_TFBS_cad
2R	18443940	2R_18443940_DEL [dm3] 2R_22556435_DEL [dm6]	GCTGCGG	G	1.809e^-4	0.833	CODON_DELETION px	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16805225	2R_16805225_SNP [dm3] 2R_20917720_SNP [dm6]	T	C	1.812e^-4	0.833	INTRON Rx
X	5111408	X_5111408_SNP [dm3] X_5217375_SNP [dm6]	T	C	1.817e^-4	0.833	INTRON CG15465 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	11576437	2R_11576437_SNP [dm3] 2R_15688932_SNP [dm6]	T	C	1.821e^-4	0.833	NON_SYNONYMOUS_CODING Cep89 UPSTREAM CG30090	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15906467	2R_15906467_SNP [dm3] 2R_20018962_SNP [dm6]	T	C	1.821e^-4	0.833	INTERGENIC
2L	8203812	2L_8203812_SNP [dm3] 2L_8203812_SNP [dm6]	C	T	1.825e^-4	0.833	INTRON CR44119 & 1 other
3R	25319407	3R_25319407_SNP [dm3] 3R_29493685_SNP [dm6]	G	C	1.831e^-4	0.833	UPSTREAM Diedel & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2R	3078696	2R_3078696_SNP [dm3] 2R_7191191_SNP [dm6]	C	T	1.831e^-4	0.833	INTRON pk	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
2L	12637954	2L_12637954_SNP [dm3] 2L_12637954_SNP [dm6]	A	G	1.831e^-4	0.833	INTRON Ref2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7470466	3L_7470466_SNP [dm3] 3L_7477366_SNP [dm6]	T	A	1.846e^-4	0.833	INTERGENIC
2R	8447091	2R_8447091_SNP [dm3] 2R_12559586_SNP [dm6]	T	C	1.848e^-4	0.833	SYNONYMOUS_CODING fra
X	19871594	X_19871594_INS [dm3] X_19977561_INS [dm6]	A	AC	1.852e^-4	0.833	INTERGENIC
2L	11456327	2L_11456327_SNP [dm3] 2L_11456327_SNP [dm6]	A	C	1.864e^-4	0.833	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	22025869	2L_22025869_SNP [dm3] 2L_22025869_SNP [dm6]	C	T	1.866e^-4	0.833	DOWNSTREAM tio INTERGENIC
X	19873187	X_19873187_INS [dm3] X_19979154_INS [dm6]	A	ATTTTCTATTAAGAGATAT...	1.875e^-4	0.833	INTERGENIC
X	19870093	X_19870093_SNP [dm3] X_19976060_SNP [dm6]	A	T	1.890e^-4	0.833	INTERGENIC
3R	25136442	3R_25136442_SNP [dm3] 3R_29310720_SNP [dm6]	A	G	1.890e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	18645717	X_18645717_SNP [dm3] X_18751684_SNP [dm6]	G	T	1.892e^-4	0.833	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10953482	3R_10953482_SNP [dm3] 3R_15127760_SNP [dm6]	A	C	1.896e^-4	0.833	INTRON CG42788
2L	12154058	2L_12154058_SNP [dm3] 2L_12154058_SNP [dm6]	C	A	1.899e^-4	0.833	INTRON CG31760
2R	16960035	2R_16960035_SNP [dm3] 2R_21072530_SNP [dm6]	G	T	1.911e^-4	0.833	DOWNSTREAM CR44704 INTRON CG10527	TF binding site mE1_TFBS_Trl
3R	14623536	3R_14623536_SNP [dm3] 3R_18797814_SNP [dm6]	C	A	1.913e^-4	0.833	INTERGENIC
3R	10939401	3R_10939401_INS [dm3] 3R_15113679_INS [dm6]	T	AC	1.926e^-4	0.833	INTRON CG42788
3R	10652762	3R_10652762_SNP [dm3] 3R_14827040_SNP [dm6]	C	T	1.928e^-4	0.833	SYNONYMOUS_CODING btsz UTR_5_PRIME btsz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17147271	3R_17147271_DEL [dm3] 3R_21321549_DEL [dm6]	TGCTCTCAGATCAATGAGTA...	T	1.928e^-4	0.833	INTRON CG16791	TF binding site mE1_TFBS_cad
X	12420969	X_12420969_SNP [dm3] X_12526936_SNP [dm6]	C	T	1.930e^-4	0.833	INTRON CG43921
3R	16024551	3R_16024551_SNP [dm3] 3R_20198829_SNP [dm6]	A	T	1.931e^-4	0.833	INTERGENIC
X	11733745	X_11733745_SNP [dm3] X_11839712_SNP [dm6]	C	A	1.935e^-4	0.833	NON_SYNONYMOUS_CODING Cyp28c1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4872215	2L_4872215_SNP [dm3] 2L_4872215_SNP [dm6]	G	A	1.936e^-4	0.833	SYNONYMOUS_CODING pog	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	1601984	3R_1601984_SNP [dm3] 3R_5776262_SNP [dm6]	A	T	1.946e^-4	0.833	INTRON CG2082
2R	1470679	2R_1470679_SNP [dm3] 2R_5583174_SNP [dm6]	A	C	1.953e^-4	0.833	INTERGENIC	transposable element FlyBase
2R	8444856	2R_8444856_SNP [dm3] 2R_12557351_SNP [dm6]	T	C	1.953e^-4	0.833	SYNONYMOUS_CODING fra	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6101026	2L_6101026_SNP [dm3] 2L_6101026_SNP [dm6]	A	C	1.959e^-4	0.833	INTRON stai	TF binding site BDTNP1_TFBS_dl
X	19874254	X_19874254_SNP [dm3] X_19980221_SNP [dm6]	A	G	1.961e^-4	0.833	INTERGENIC
2R	11607820	2R_11607820_SNP [dm3] 2R_15720315_SNP [dm6]	C	A	1.963e^-4	0.833	INTERGENIC
3R	9409833	3R_9409833_INS [dm3] 3R_13584111_INS [dm6]	A	AC	1.965e^-4	0.833	INTERGENIC
2R	18066264	2R_18066264_SNP [dm3] 2R_22178759_SNP [dm6]	A	G	1.968e^-4	0.833	UPSTREAM CG11170 & 1 other INTRON CG11170	TF binding site BDTNP1_TFBS_twi
2R	16961944	2R_16961944_DEL [dm3] 2R_21074439_DEL [dm6]	TAAATA	T	1.968e^-4	0.833	INTRON Treh
3L	7138322	3L_7138322_SNP [dm3] 3L_7145222_SNP [dm6]	A	G	1.978e^-4	0.833	INTRON corn
2R	7586357	2R_7586357_DEL [dm3] 2R_11698852_DEL [dm6]	GTCTTACAGGG...	G	1.978e^-4	0.833	DOWNSTREAM Ir48a INTERGENIC
3R	7278093	3R_7278093_SNP [dm3] 3R_11452371_SNP [dm6]	C	T	1.979e^-4	0.833	UPSTREAM sals DOWNSTREAM PGRP-LB INTRON CG17230
2L	5395011	2L_5395011_SNP [dm3] 2L_5395011_SNP [dm6]	C	T	1.984e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	1714888	3L_1714888_SNP [dm3] 3L_1714888_SNP [dm6]	C	T	1.985e^-4	0.833	SYNONYMOUS_CODING CG7991 DOWNSTREAM drpr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9756990	X_9756990_SNP [dm3] X_9862957_SNP [dm6]	A	G	1.986e^-4	0.833	INTERGENIC
3R	7365388	3R_7365388_SNP [dm3] 3R_11539666_SNP [dm6]	A	G	1.988e^-4	0.833	INTRON dpr4
3L	11408920	3L_11408920_INS [dm3] 3L_11415820_INS [dm6]	G	GATGGGT	1.990e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	24427748	3R_24427748_SNP [dm3] 3R_28602026_SNP [dm6]	A	T	1.991e^-4	0.833	UPSTREAM snoRNA:Psi28S-3405c & 2 others DOWNSTREAM snoRNA:Psi28S-3405a & 2 others INTRON Hrb98DE
2L	19388021	2L_19388021_SNP [dm3] 2L_19388021_SNP [dm6]	G	T	1.991e^-4	0.833	INTRON CG17549
2R	14562763	2R_14562763_SNP [dm3] 2R_18675258_SNP [dm6]	C	T	2.003e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3823089	2L_3823089_SNP [dm3] 2L_3823089_SNP [dm6]	A	C	2.006e^-4	0.833	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	14687837	2R_14687837_INS [dm3] 2R_18800332_INS [dm6]	G	GATAGCATAAATG...	2.007e^-4	0.833	INTRON l_2_08717	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9367153	3L_9367153_SNP [dm3] 3L_9374053_SNP [dm6]	T	C	2.009e^-4	0.833	UTR_5_PRIME Hsp22 UTR_3_PRIME Hsp67Bb DOWNSTREAM Hsp67Bb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	2887446	2L_2887446_SNP [dm3] 2L_2887446_SNP [dm6]	A	T	2.010e^-4	0.833	UPSTREAM lilli INTRON lilli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3L	7285233	3L_7285233_SNP [dm3] 3L_7292133_SNP [dm6]	C	A	2.025e^-4	0.833	INTRON unc-13-4A
3L	8045690	3L_8045690_INS [dm3] 3L_8052590_INS [dm6]	T	TT	2.030e^-4	0.833	UTR_3_PRIME nmo	TF binding site mE1_TFBS_zfh1
2L	9573703	2L_9573703_INS [dm3] 2L_9573703_INS [dm6]	T	TGTCCCT	2.034e^-4	0.833	UTR_3_PRIME Mtpalpha DOWNSTREAM CG3838
3R	1249354	3R_1249354_SNP [dm3] 3R_5423632_SNP [dm6]	C	A	2.034e^-4	0.833	INTRON CG14669
3L	1942318	3L_1942318_SNP [dm3] 3L_1942318_SNP [dm6]	G	C	2.038e^-4	0.833	SYNONYMOUS_CODING Mfap1 DOWNSTREAM mu2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	21913716	2L_21913716_SNP [dm3] 2L_21913716_SNP [dm6]	A	T	2.039e^-4	0.833	DOWNSTREAM CG31600 INTERGENIC
2L	19387974	2L_19387974_SNP [dm3] 2L_19387974_SNP [dm6]	A	T	2.045e^-4	0.833	INTRON CG17549
2L	19387981	2L_19387981_SNP [dm3] 2L_19387981_SNP [dm6]	G	A	2.045e^-4	0.833	INTRON CG17549
2L	19388006	2L_19388006_SNP [dm3] 2L_19388006_SNP [dm6]	A	G	2.045e^-4	0.833	INTRON CG17549
2L	19388022	2L_19388022_SNP [dm3] 2L_19388022_SNP [dm6]	G	A	2.045e^-4	0.833	INTRON CG17549
3R	14676446	3R_14676446_SNP [dm3] 3R_18850724_SNP [dm6]	T	C	2.046e^-4	0.833	DOWNSTREAM CR45633 & 1 other INTERGENIC
X	20559156	X_20559156_DEL [dm3] X_20688129_DEL [dm6]	AA	A	2.050e^-4	0.833	DOWNSTREAM CR43862 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	1646793	3L_1646793_SNP [dm3] 3L_1646793_SNP [dm6]	G	A	2.075e^-4	0.833	NON_SYNONYMOUS_CODING CG17249 DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12110914	2L_12110914_SNP [dm3] 2L_12110914_SNP [dm6]	T	C	2.077e^-4	0.833	UPSTREAM Phae2 DOWNSTREAM Phae1 INTERGENIC
2L	4803750	2L_4803750_SNP [dm3] 2L_4803750_SNP [dm6]	T	C	2.078e^-4	0.833	INTERGENIC
2L	9571449	2L_9571449_SNP [dm3] 2L_9571449_SNP [dm6]	G	A	2.079e^-4	0.833	INTRON CG3838
3L	7484626	3L_7484626_SNP [dm3] 3L_7491526_SNP [dm6]	G	T	2.091e^-4	0.833	UPSTREAM Cyp316a1 INTERGENIC
3R	22221158	3R_22221158_SNP [dm3] 3R_26395436_SNP [dm6]	A	T	2.098e^-4	0.833	INTERGENIC
2L	7100403	2L_7100403_SNP [dm3] 2L_7100403_SNP [dm6]	G	A	2.106e^-4	0.833	SYNONYMOUS_CODING Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	6343632	3R_6343632_SNP [dm3] 3R_10517910_SNP [dm6]	G	T	2.107e^-4	0.833	INTRON hth
2R	11348528	2R_11348528_SNP [dm3] 2R_15461023_SNP [dm6]	C	G	2.115e^-4	0.833	NON_SYNONYMOUS_CODING CG43729 INTRON CG43729
2L	9109653	2L_9109653_SNP [dm3] 2L_9109653_SNP [dm6]	G	A	2.122e^-4	0.833	INTERGENIC
2L	19388008	2L_19388008_DEL [dm3] 2L_19388008_DEL [dm6]	CAATCTATCC	C	2.127e^-4	0.833	INTRON CG17549
X	7611601	X_7611601_SNP [dm3] X_7717568_SNP [dm6]	A	T	2.128e^-4	0.833	INTRON CG15478
2L	9109659	2L_9109659_SNP [dm3] 2L_9109659_SNP [dm6]	T	G	2.132e^-4	0.833	INTERGENIC
2L	13045735	2L_13045735_SNP [dm3] 2L_13045735_SNP [dm6]	A	T	2.136e^-4	0.833	INTRON CG9932
3L	7896882	3L_7896882_SNP [dm3] 3L_7903782_SNP [dm6]	G	A	2.139e^-4	0.833	UPSTREAM pbl INTRON pbl	TF binding site mE1_TFBS_D
2R	18066258	2R_18066258_SNP [dm3] 2R_22178753_SNP [dm6]	G	A	2.142e^-4	0.833	UPSTREAM CG11170 & 1 other INTRON CG11170	TF binding site BDTNP1_TFBS_twi
2L	4448327	2L_4448327_SNP [dm3] 2L_4448327_SNP [dm6]	G	A	2.145e^-4	0.833	DOWNSTREAM CG15439 INTRON MFS18	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	3261299	2R_3261299_DEL [dm3] 2R_7373794_DEL [dm6]	TGAAT	T	2.149e^-4	0.833	INTRON Dscam1	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10622291	2L_10622291_SNP [dm3] 2L_10622291_SNP [dm6]	C	T	2.151e^-4	0.833	INTRON Trim9
2L	9883912	2L_9883912_SNP [dm3] 2L_9883912_SNP [dm6]	C	G	2.159e^-4	0.833	INTRON nAChRalpha6
2L	13045747	2L_13045747_SNP [dm3] 2L_13045747_SNP [dm6]	A	C	2.161e^-4	0.833	INTRON CG9932
2L	15996824	2L_15996824_DEL [dm3] 2L_15996824_DEL [dm6]	GTTAAAATCAT...	A	2.163e^-4	0.833	INTERGENIC
2R	8446966	2R_8446966_SNP [dm3] 2R_12559461_SNP [dm6]	A	C	2.177e^-4	0.833	INTRON fra
X	16052627	X_16052627_SNP [dm3] X_16158594_SNP [dm6]	T	C	2.182e^-4	0.833	INTERGENIC
3L	12668373	3L_12668373_SNP [dm3] 3L_12675273_SNP [dm6]	T	A	2.183e^-4	0.833	INTERGENIC
3L	6690498	3L_6690498_SNP [dm3] 3L_6697398_SNP [dm6]	G	A	2.184e^-4	0.833	INTRON SP1173
3R	25945230	3R_25945230_SNP [dm3] 3R_30119508_SNP [dm6]	G	A	2.185e^-4	0.833	INTRON sima
3L	2172172	3L_2172172_SNP [dm3] 3L_2172172_SNP [dm6]	G	A	2.187e^-4	0.833	SPLICE_SITE_REGION CR15821 DOWNSTREAM CG15820 INTRON CR15821
X	9644919	X_9644919_SNP [dm3] X_9750886_SNP [dm6]	T	C	2.187e^-4	0.833	INTRON Sp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	15175389	2R_15175389_SNP [dm3] 2R_19287884_SNP [dm6]	A	T	2.189e^-4	0.833	UPSTREAM CG18606 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16987178	3R_16987178_SNP [dm3] 3R_21161456_SNP [dm6]	T	C	2.192e^-4	0.833	UPSTREAM CG10824 INTRON SNF4Agamma
3R	16988899	3R_16988899_SNP [dm3] 3R_21163177_SNP [dm6]	T	A	2.196e^-4	0.833	UPSTREAM CG5810 INTRON SNF4Agamma
3R	8429017	3R_8429017_SNP [dm3] 3R_12603295_SNP [dm6]	A	T	2.199e^-4	0.833	INTERGENIC
3L	7823186	3L_7823186_SNP [dm3] 3L_7830086_SNP [dm6]	C	T	2.201e^-4	0.833	INTRON Pdp1
3R	19776623	3R_19776623_SNP [dm3] 3R_23950901_SNP [dm6]	G	C	2.209e^-4	0.833	INTERGENIC
2R	12176326	2R_12176326_SNP [dm3] 2R_16288821_SNP [dm6]	C	T	2.218e^-4	0.833	NON_SYNONYMOUS_CODING CG30099 UPSTREAM CG30324 & 1 other DOWNSTREAM CR43730	TF binding site mE1_TFBS_cad
X	6791837	X_6791837_SNP [dm3] X_6897804_SNP [dm6]	A	G	2.218e^-4	0.833	INTERGENIC
3R	5899546	3R_5899546_DEL [dm3] 3R_10073824_DEL [dm6]	TAAACATTTTTATTACATAT...	T	2.220e^-4	0.833	UTR_3_PRIME CG5361 DOWNSTREAM nerfin-2	TF binding site mE1_TFBS_cad
3L	14929721	3L_14929721_SNP [dm3] 3L_14936621_SNP [dm6]	G	A	2.226e^-4	0.833	INTRON DCX-EMAP
2L	7217422	2L_7217422_SNP [dm3] 2L_7217422_SNP [dm6]	G	T	2.228e^-4	0.833	INTRON CG13784	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	391610	2L_391610_SNP [dm3] 2L_391610_SNP [dm6]	A	C	2.243e^-4	0.833	INTERGENIC
2L	9568752	2L_9568752_SNP [dm3] 2L_9568752_SNP [dm6]	T	G	2.251e^-4	0.833	UPSTREAM CG3838 EXON CR44149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	4602729	X_4602729_SNP [dm3] X_4708696_SNP [dm6]	A	T	2.251e^-4	0.833	UPSTREAM Proc-R INTRON Proc-R
2R	19964130	2R_19964130_SNP [dm3] 2R_24076607_SNP [dm6]	T	C	2.253e^-4	0.833	SPLICE_SITE_REGION Mlp60A DOWNSTREAM Mlp60A INTRON Mlp60A	TF binding site mE1_TFBS_cad
2L	9567451	2L_9567451_DEL [dm3] 2L_9567451_DEL [dm6]	AA	A	2.254e^-4	0.833	UPSTREAM jp DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	7217503	2L_7217503_SNP [dm3] 2L_7217503_SNP [dm6]	G	C	2.257e^-4	0.833	INTRON CG13784	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	16017447	X_16017447_SNP [dm3] X_16123414_SNP [dm6]	T	C	2.260e^-4	0.833	INTRON disco-r
3R	22483136	3R_22483136_SNP [dm3] 3R_26657414_SNP [dm6]	G	A	2.267e^-4	0.833	SYNONYMOUS_CODING Tb INTRON beat-VII
3R	14229353	3R_14229353_SNP [dm3] 3R_18403631_SNP [dm6]	A	G	2.267e^-4	0.833	UPSTREAM CG12333 INTRON koko	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
X	15738163	X_15738163_SNP [dm3] X_15844130_SNP [dm6]	C	A	2.268e^-4	0.833	START_GAINED Aats-arg UTR_5_PRIME Aats-arg UPSTREAM CG8578	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
2L	9567366	2L_9567366_SNP [dm3] 2L_9567366_SNP [dm6]	C	G	2.269e^-4	0.833	UPSTREAM jp DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	7611598	X_7611598_SNP [dm3] X_7717565_SNP [dm6]	G	T	2.294e^-4	0.833	INTRON CG15478
3L	5123063	3L_5123063_SNP [dm3] 3L_5129963_SNP [dm6]	G	C	2.297e^-4	0.833	NON_SYNONYMOUS_CODING CG4597
3L	18302783	3L_18302783_SNP [dm3] 3L_18309683_SNP [dm6]	T	C	2.298e^-4	0.833	INTERGENIC
2R	3078631	2R_3078631_DEL [dm3] 2R_7191126_DEL [dm6]	TACT	T	2.300e^-4	0.833	INTRON pk	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
2R	19049647	2R_19049647_SNP [dm3] 2R_23162124_SNP [dm6]	A	T	2.304e^-4	0.833	DOWNSTREAM CG34371 & 1 other INTERGENIC
2L	3116269	2L_3116269_SNP [dm3] 2L_3116269_SNP [dm6]	T	C	2.305e^-4	0.833	INTRON toc
2L	12154065	2L_12154065_SNP [dm3] 2L_12154065_SNP [dm6]	G	T	2.317e^-4	0.833	INTRON CG31760
3R	23551090	3R_23551090_SNP [dm3] 3R_27725368_SNP [dm6]	A	G	2.320e^-4	0.833	INTERGENIC
2R	16917558	2R_16917558_SNP [dm3] 2R_21030053_SNP [dm6]	C	T	2.322e^-4	0.833	UPSTREAM CR45148 INTERGENIC
3L	1317457	3L_1317457_SNP [dm3] 3L_1317457_SNP [dm6]	G	A	2.328e^-4	0.833	SYNONYMOUS_CODING CG9153	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	255834	X_255834_SNP [dm3] X_361801_SNP [dm6]	C	T	2.334e^-4	0.833	UPSTREAM yar DOWNSTREAM y INTRON CG32816	regulatory region REDfly_CRMs
2R	15267497	2R_15267497_SNP [dm3] 2R_19379992_SNP [dm6]	G	A	2.337e^-4	0.833	SYNONYMOUS_CODING CG10062 UPSTREAM CG10073
2L	22134657	2L_22134657_SNP [dm3] 2L_22134657_SNP [dm6]	G	A	2.338e^-4	0.833	UTR_5_PRIME CG42748 INTRON CG42748	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3L	12026303	3L_12026303_SNP [dm3] 3L_12033203_SNP [dm6]	G	C	2.342e^-4	0.833	DOWNSTREAM CG43993 INTRON rols
2R	14028495	2R_14028495_SNP [dm3] 2R_18140990_SNP [dm6]	T	C	2.344e^-4	0.833	UPSTREAM pAbp DOWNSTREAM Pcl INTRON pAbp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	11300894	3R_11300894_SNP [dm3] 3R_15475172_SNP [dm6]	G	A	2.346e^-4	0.833	SYNONYMOUS_CODING AdamTS-A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	18456133	2R_18456133_SNP [dm3] 2R_22568628_SNP [dm6]	G	T	2.349e^-4	0.833	INTRON dnr1	TF binding site mE1_TFBS_Trl
X	3414046	X_3414046_SNP [dm3] X_3520013_SNP [dm6]	C	A	2.353e^-4	0.833	INTRON CR44999 & 1 other
2L	12154021	2L_12154021_SNP [dm3] 2L_12154021_SNP [dm6]	A	C	2.355e^-4	0.833	INTRON CG31760
2L	12154023	2L_12154023_SNP [dm3] 2L_12154023_SNP [dm6]	G	A	2.355e^-4	0.833	INTRON CG31760
3L	1593858	3L_1593858_SNP [dm3] 3L_1593858_SNP [dm6]	C	G	2.372e^-4	0.833	SYNONYMOUS_CODING CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14926489	3L_14926489_SNP [dm3] 3L_14933389_SNP [dm6]	A	C	2.386e^-4	0.833	INTRON DCX-EMAP
2R	15394519	2R_15394519_SNP [dm3] 2R_19507014_SNP [dm6]	C	T	2.391e^-4	0.833	UPSTREAM tRNA:H:56E INTERGENIC
2R	9540713	2R_9540713_SNP [dm3] 2R_13653208_SNP [dm6]	T	A	2.403e^-4	0.833	INTRON fas	TF binding site BDTNP1_TFBS_twi
2R	16726983	2R_16726983_SNP [dm3] 2R_20839478_SNP [dm6]	A	G	2.404e^-4	0.833	DOWNSTREAM CR44667 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	9934926	2R_9934926_SNP [dm3] 2R_14047421_SNP [dm6]	G	T	2.407e^-4	0.833	INTRON mam
3R	19528895	3R_19528895_SNP [dm3] 3R_23703173_SNP [dm6]	T	C	2.410e^-4	0.833	SYNONYMOUS_CODING CG31413 DOWNSTREAM CG31148	TF binding site mE1_TFBS_sens
3R	18930880	3R_18930880_SNP [dm3] 3R_23105158_SNP [dm6]	A	T	2.414e^-4	0.833	INTRON CG13830
X	3193452	X_3193452_SNP [dm3] X_3299419_SNP [dm6]	G	C	2.434e^-4	0.833	INTRON dnc	TF binding site mE1_TFBS_HSA
X	3193455	X_3193455_SNP [dm3] X_3299422_SNP [dm6]	G	C	2.434e^-4	0.833	INTRON dnc	TF binding site mE1_TFBS_HSA
2R	11251034	2R_11251034_INS [dm3] 2R_15363529_INS [dm6]	A	ATA	2.442e^-4	0.833	INTRON unc-5
2R	14778783	2R_14778783_SNP [dm3] 2R_18891278_SNP [dm6]	A	G	2.444e^-4	0.833	INTRON sano
2L	9568674	2L_9568674_INS [dm3] 2L_9568674_INS [dm6]	A	AATTAA	2.448e^-4	0.833	UPSTREAM CG3838 EXON CR44149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	12204811	2L_12204811_SNP [dm3] 2L_12204811_SNP [dm6]	C	A	2.450e^-4	0.833	INTRON aret
3L	15585602	3L_15585602_SNP [dm3] 3L_15592502_SNP [dm6]	C	T	2.451e^-4	0.833	INTRON RhoGAP71E	TF binding site BDTNP1_TFBS_dl
3L	9738662	3L_9738662_SNP [dm3] 3L_9745562_SNP [dm6]	C	T	2.456e^-4	0.833	INTRON CG42268
X	19871464	X_19871464_SNP [dm3] X_19977431_SNP [dm6]	A	G	2.456e^-4	0.833	INTERGENIC
2R	8137710	2R_8137710_SNP [dm3] 2R_12250205_SNP [dm6]	C	A	2.457e^-4	0.833	INTERGENIC
3L	743426	3L_743426_SNP [dm3] 3L_743426_SNP [dm6]	C	T	2.457e^-4	0.833	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	12112024	2L_12112024_SNP [dm3] 2L_12112024_SNP [dm6]	C	A	2.463e^-4	0.833	UTR_3_PRIME Phae2 DOWNSTREAM Phae2	TF binding site mE1_TFBS_cad
3L	3895590	3L_3895590_SNP [dm3] 3L_3895590_SNP [dm6]	A	C	2.466e^-4	0.833	SYNONYMOUS_CODING Gr63a DOWNSTREAM Fie	TF binding site mE1_TFBS_sens
2R	14461653	2R_14461653_INS [dm3] 2R_18574148_INS [dm6]	A	ACTGAA	2.467e^-4	0.833	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8446983	2R_8446983_DEL [dm3] 2R_12559478_DEL [dm6]	AA	A	2.468e^-4	0.833	INTRON fra
3L	1645310	3L_1645310_SNP [dm3] 3L_1645310_SNP [dm6]	C	T	2.470e^-4	0.833	UPSTREAM CG13919 & 1 other DOWNSTREAM CG17249 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	7041554	2L_7041554_SNP [dm3] 2L_7041554_SNP [dm6]	A	G	2.471e^-4	0.833	UPSTREAM milt INTRON milt
2R	19564911	2R_19564911_SNP [dm3] 2R_23677388_SNP [dm6]	T	A	2.472e^-4	0.833	INTRON Pde8	TF binding site mE1_TFBS_cad
3R	19535795	3R_19535795_SNP [dm3] 3R_23710073_SNP [dm6]	G	T	2.477e^-4	0.833	UPSTREAM CG10301 INTERGENIC
X	12275928	X_12275928_INS [dm3] X_12381895_INS [dm6]	T	TTTATTA	2.502e^-4	0.833	INTERGENIC
2R	16726992	2R_16726992_SNP [dm3] 2R_20839487_SNP [dm6]	G	T	2.511e^-4	0.833	DOWNSTREAM CR44667 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	13926849	3R_13926849_SNP [dm3] 3R_18101127_SNP [dm6]	G	A	2.513e^-4	0.833	INTRON sr
3L	7259205	3L_7259205_SNP [dm3] 3L_7266105_SNP [dm6]	C	A	2.519e^-4	0.833	DOWNSTREAM unc-13-4A INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16277389	2R_16277389_SNP [dm3] 2R_20389884_SNP [dm6]	G	A	2.520e^-4	0.833	INTERGENIC
2L	8986534	2L_8986534_SNP [dm3] 2L_8986534_SNP [dm6]	A	C	2.543e^-4	0.833	INTRON rost
2R	20021191	2R_20021191_SNP [dm3] 2R_24133668_SNP [dm6]	G	A	2.546e^-4	0.833	UPSTREAM Zfrp8 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	4205190	X_4205190_SNP [dm3] X_4311157_SNP [dm6]	A	G	2.548e^-4	0.833	DOWNSTREAM CG15579 & 1 other INTERGENIC
2L	8798664	2L_8798664_SNP [dm3] 2L_8798664_SNP [dm6]	G	A	2.554e^-4	0.833	INTERGENIC
3R	10658469	3R_10658469_DEL [dm3] 3R_14832747_DEL [dm6]	TTT	T	2.566e^-4	0.833	INTRON btsz
2L	7963032	2L_7963032_SNP [dm3] 2L_7963032_SNP [dm6]	A	G	2.571e^-4	0.833	INTRON Snoo
2L	12154066	2L_12154066_SNP [dm3] 2L_12154066_SNP [dm6]	G	T	2.574e^-4	0.833	INTRON CG31760
2L	13045772	2L_13045772_SNP [dm3] 2L_13045772_SNP [dm6]	G	A	2.585e^-4	0.833	INTRON CG9932
X	4570546	X_4570546_SNP [dm3] X_4676513_SNP [dm6]	G	A	2.587e^-4	0.833	UTR_5_PRIME rap
3L	4737896	3L_4737896_SNP [dm3] 3L_4737896_SNP [dm6]	G	A	2.589e^-4	0.833	INTRON RhoGEF64C
2R	7102554	2R_7102554_SNP [dm3] 2R_11215049_SNP [dm6]	T	A	2.591e^-4	0.833	NON_SYNONYMOUS_CODING shn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	16987128	3R_16987128_SNP [dm3] 3R_21161406_SNP [dm6]	A	G	2.591e^-4	0.833	UPSTREAM CG10824 INTRON SNF4Agamma
2R	5810800	2R_5810800_SNP [dm3] 2R_9923295_SNP [dm6]	G	C	2.595e^-4	0.833	INTRON Mef2
2R	6916127	2R_6916127_INS [dm3] 2R_11028622_INS [dm6]	T	TTCCAGCTTGCTAGCTC...	2.595e^-4	0.833	INTRON luna
2L	9568637	2L_9568637_SNP [dm3] 2L_9568637_SNP [dm6]	A	G	2.598e^-4	0.833	UPSTREAM CG3838 EXON CR44149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	11144462	2L_11144462_SNP [dm3] 2L_11144462_SNP [dm6]	C	T	2.601e^-4	0.833	DOWNSTREAM CG31867 INTRON Gyc32E	TF binding site mE1_TFBS_cad
3R	10573381	3R_10573381_SNP [dm3] 3R_14747659_SNP [dm6]	T	A	2.605e^-4	0.833	UPSTREAM smp-30 INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2R	3509129	2R_3509129_SNP [dm3] 2R_7621624_SNP [dm6]	A	G	2.606e^-4	0.833	UPSTREAM CG1358 DOWNSTREAM CR44444 INTERGENIC
2R	14084687	2R_14084687_INS [dm3] 2R_18197182_INS [dm6]	A	ATAATATATGT...	2.607e^-4	0.833	INTERGENIC
3R	14229363	3R_14229363_SNP [dm3] 3R_18403641_SNP [dm6]	T	A	2.616e^-4	0.833	UPSTREAM CG12333 INTRON koko	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	22422056	3R_22422056_SNP [dm3] 3R_26596334_SNP [dm6]	A	G	2.617e^-4	0.833	DOWNSTREAM scrib INTRON scrib
2R	11529759	2R_11529759_SNP [dm3] 2R_15642254_SNP [dm6]	A	G	2.619e^-4	0.833	INTRON CG42524
2R	9163342	2R_9163342_SNP [dm3] 2R_13275837_SNP [dm6]	T	A	2.621e^-4	0.833	INTRON Dh31-R
3R	15042374	3R_15042374_INS [dm3] 3R_19216652_INS [dm6]	T	TGT	2.622e^-4	0.833	UTR_3_PRIME vib
2L	2084191	2L_2084191_SNP [dm3] 2L_2084191_SNP [dm6]	A	G	2.623e^-4	0.833	INTRON dpr3 EXON CR44055	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	15996806	2L_15996806_SNP [dm3] 2L_15996806_SNP [dm6]	A	G	2.637e^-4	0.833	INTERGENIC
3L	10291868	3L_10291868_SNP [dm3] 3L_10298768_SNP [dm6]	T	A	2.640e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20159522	X_20159522_SNP [dm3] X_20288495_SNP [dm6]	C	T	2.646e^-4	0.833	INTERGENIC
3L	7484520	3L_7484520_SNP [dm3] 3L_7491420_SNP [dm6]	T	A	2.649e^-4	0.833	UPSTREAM Cyp316a1 INTERGENIC
2L	4406015	2L_4406015_SNP [dm3] 2L_4406015_SNP [dm6]	G	A	2.651e^-4	0.833	UTR_3_PRIME CG15431	TF binding site mE1_TFBS_cad
3R	8429011	3R_8429011_SNP [dm3] 3R_12603289_SNP [dm6]	A	G	2.655e^-4	0.833	INTERGENIC
2R	20633042	2R_20633042_SNP [dm3] 2R_24745519_SNP [dm6]	G	T	2.655e^-4	0.833	INTRON CG30421	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	18161048	2R_18161048_SNP [dm3] 2R_22273543_SNP [dm6]	C	A	2.658e^-4	0.833	INTRON dve	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18645749	X_18645749_SNP [dm3] X_18751716_SNP [dm6]	C	A	2.661e^-4	0.833	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12522473	3L_12522473_SNP [dm3] 3L_12529373_SNP [dm6]	A	T	2.666e^-4	0.833	INTRON nst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
2R	15394555	2R_15394555_INS [dm3] 2R_19507050_INS [dm6]	A	AC	2.668e^-4	0.833	UPSTREAM tRNA:H:56E INTERGENIC
2R	11326862	2R_11326862_SNP [dm3] 2R_15439357_SNP [dm6]	C	T	2.672e^-4	0.833	INTRON CG43729
2R	13473150	2R_13473150_SNP [dm3] 2R_17585645_SNP [dm6]	A	T	2.682e^-4	0.833	UTR_3_PRIME CG14483 UPSTREAM CR45275 DOWNSTREAM RhoGAP54D	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	10942880	3R_10942880_SNP [dm3] 3R_15117158_SNP [dm6]	A	T	2.699e^-4	0.833	INTRON CG42788	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5885965	3L_5885965_SNP [dm3] 3L_5892865_SNP [dm6]	T	C	2.703e^-4	0.833	INTERGENIC
3L	9247114	3L_9247114_SNP [dm3] 3L_9254014_SNP [dm6]	T	C	2.709e^-4	0.833	INTRON GluRIB
2R	18540136	2R_18540136_SNP [dm3] 2R_22652631_SNP [dm6]	T	A	2.714e^-4	0.833	UTR_3_PRIME nsr & 1 other DOWNSTREAM nsr
2L	8703034	2L_8703034_SNP [dm3] 2L_8703034_SNP [dm6]	C	T	2.723e^-4	0.833	UPSTREAM CR44992 INTRON Hnf4
3L	7484642	3L_7484642_SNP [dm3] 3L_7491542_SNP [dm6]	T	C	2.725e^-4	0.833	UPSTREAM Cyp316a1 INTERGENIC
3L	8824042	3L_8824042_SNP [dm3] 3L_8830942_SNP [dm6]	G	A	2.726e^-4	0.833	INTRON dally	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	19873081	X_19873081_SNP [dm3] X_19979048_SNP [dm6]	G	T	2.733e^-4	0.833	INTERGENIC
2R	3475375	2R_3475375_SNP [dm3] 2R_7587870_SNP [dm6]	C	T	2.740e^-4	0.833	UTR_3_PRIME CG1360 UPSTREAM blow	TF binding site mE1_TFBS_cad
X	16801388	X_16801388_SNP [dm3] X_16907355_SNP [dm6]	G	A	2.742e^-4	0.833	INTRON CR44754
3L	1638953	3L_1638953_SNP [dm3] 3L_1638953_SNP [dm6]	G	A	2.745e^-4	0.833	SYNONYMOUS_CODING metl UPSTREAM Bgb INTRON metl	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	14603596	3R_14603596_SNP [dm3] 3R_18777874_SNP [dm6]	G	C	2.748e^-4	0.833	INTRON CG7720
3R	10658480	3R_10658480_SNP [dm3] 3R_14832758_SNP [dm6]	G	T	2.750e^-4	0.833	INTRON btsz
3L	16485978	3L_16485978_SNP [dm3] 3L_16492878_SNP [dm6]	A	T	2.753e^-4	0.833	SYNONYMOUS_CODING CG42514 UTR_3_PRIME CG43373 INTRON CG33158	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	5885681	3L_5885681_SNP [dm3] 3L_5892581_SNP [dm6]	A	G	2.761e^-4	0.833	INTERGENIC
2L	2397228	2L_2397228_INS [dm3] 2L_2397228_INS [dm6]	T	TGTTGGTAAAAAT...	2.766e^-4	0.833	INTRON VGlut
2L	2397235	2L_2397235_SNP [dm3] 2L_2397235_SNP [dm6]	A	T	2.766e^-4	0.833	INTRON VGlut
3L	567908	3L_567908_SNP [dm3] 3L_567908_SNP [dm6]	G	A	2.767e^-4	0.833	INTRON hipk
3L	17051681	3L_17051681_SNP [dm3] 3L_17058581_SNP [dm6]	G	T	2.770e^-4	0.833	DOWNSTREAM Rbp6 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	1617657	3L_1617657_SNP [dm3] 3L_1617657_SNP [dm6]	A	C	2.781e^-4	0.833	UPSTREAM ABCB7 & 1 other DOWNSTREAM CG33791 & 1 other INTRON CG13926	TF binding site mE1_TFBS_HSA
3R	14388587	3R_14388587_SNP [dm3] 3R_18562865_SNP [dm6]	T	G	2.782e^-4	0.833	INTERGENIC
X	19873291	X_19873291_INS [dm3] X_19979258_INS [dm6]	T	TTGATGT	2.783e^-4	0.833	INTERGENIC
2L	2922113	2L_2922113_SNP [dm3] 2L_2922113_SNP [dm6]	A	T	2.808e^-4	0.833	INTRON lilli
2R	18356897	2R_18356897_SNP [dm3] 2R_22469392_SNP [dm6]	G	C	2.811e^-4	0.833	INTRON CG10384	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8808554	2L_8808554_SNP [dm3] 2L_8808554_SNP [dm6]	T	A	2.813e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	21749629	2L_21749629_SNP [dm3] 2L_21749629_SNP [dm6]	G	A	2.822e^-4	0.833	INTRON step	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17986052	3R_17986052_SNP [dm3] 3R_22160330_SNP [dm6]	G	A	2.826e^-4	0.833	INTRON SKIP	TF binding site mE1_TFBS_Kr
3L	12528943	3L_12528943_SNP [dm3] 3L_12535843_SNP [dm6]	C	G	2.848e^-4	0.833	NON_SYNONYMOUS_CODING CG4069 DOWNSTREAM CG10688	TF binding site mE1_TFBS_cad
3R	22229624	3R_22229624_SNP [dm3] 3R_26403902_SNP [dm6]	G	A	2.848e^-4	0.833	UPSTREAM ppk15 INTERGENIC
2L	7530084	2L_7530084_SNP [dm3] 2L_7530084_SNP [dm6]	G	T	2.849e^-4	0.833	UTR_5_PRIME RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	18993657	2R_18993657_SNP [dm3] 2R_23106134_SNP [dm6]	T	C	2.849e^-4	0.833	UPSTREAM Gr59d INTERGENIC
3L	10642604	3L_10642604_SNP [dm3] 3L_10649504_SNP [dm6]	A	G	2.851e^-4	0.833	INTRON CG32066
2R	4678999	2R_4678999_SNP [dm3] 2R_8791494_SNP [dm6]	T	C	2.851e^-4	0.833	INTERGENIC
2R	18067031	2R_18067031_SNP [dm3] 2R_22179526_SNP [dm6]	T	G	2.861e^-4	0.833	UPSTREAM CG11170 & 1 other INTRON CG11170	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	12589087	3R_12589087_DEL [dm3] 3R_16763365_DEL [dm6]	TT	T	2.865e^-4	0.833	DOWNSTREAM tre-3 & 1 other INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	23517119	3R_23517119_SNP [dm3] 3R_27691397_SNP [dm6]	G	A	2.875e^-4	0.833	INTRON CG12880	TF binding site mE1_TFBS_chinmo
3R	15429360	3R_15429360_SNP [dm3] 3R_19603638_SNP [dm6]	C	T	2.875e^-4	0.833	INTRON CG7342
2R	7945612	2R_7945612_INS [dm3] 2R_12058107_INS [dm6]	A	AA	2.877e^-4	0.833	INTRON Drep-3
2L	2397271	2L_2397271_SNP [dm3] 2L_2397271_SNP [dm6]	T	G	2.882e^-4	0.833	INTRON VGlut
3R	20401761	3R_20401761_INS [dm3] 3R_24576039_INS [dm6]	C	CAAAGAGC	2.883e^-4	0.833	INTRON CG13624
2R	16361222	2R_16361222_SNP [dm3] 2R_20473717_SNP [dm6]	T	A	2.886e^-4	0.833	INTRON CG12484
3L	394465	3L_394465_SNP [dm3] 3L_394465_SNP [dm6]	T	A	2.888e^-4	0.833	DOWNSTREAM CR43969 INTERGENIC
2L	414406	2L_414406_SNP [dm3] 2L_414406_SNP [dm6]	T	A	2.888e^-4	0.833	UPSTREAM ebi INTRON AP-2alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	8156777	X_8156777_SNP [dm3] X_8262744_SNP [dm6]	C	A	2.892e^-4	0.833	INTRON CG1632
2L	8808555	2L_8808555_SNP [dm3] 2L_8808555_SNP [dm6]	A	G	2.893e^-4	0.833	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	12021418	X_12021418_INS [dm3] X_12127385_INS [dm6]	A	AAA	2.895e^-4	0.833	UPSTREAM Ten-a INTRON Ten-a
2R	9414064	2R_9414064_SNP [dm3] 2R_13526559_SNP [dm6]	C	G	2.896e^-4	0.833	DOWNSTREAM CG13332 INTRON Vmat
3R	22153955	3R_22153955_SNP [dm3] 3R_26328233_SNP [dm6]	A	T	2.900e^-4	0.833	INTRON CG33970
2R	16805177	2R_16805177_SNP [dm3] 2R_20917672_SNP [dm6]	G	A	2.907e^-4	0.833	INTRON Rx
2R	12116819	2R_12116819_SNP [dm3] 2R_16229314_SNP [dm6]	A	G	2.910e^-4	0.833	SYNONYMOUS_CODING Tsf3 UPSTREAM CG15701 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	1693400	2R_1693400_SNP [dm3] 2R_5805895_SNP [dm6]	T	C	2.917e^-4	0.833	INTRON dpr12
2R	20892707	2R_20892707_SNP [dm3] 2R_25005184_SNP [dm6]	C	A	2.919e^-4	0.833	INTRON zip
2L	16504882	2L_16504882_SNP [dm3] 2L_16504882_SNP [dm6]	C	T	2.920e^-4	0.833	INTRON Tpr2
2R	7067644	2R_7067644_SNP [dm3] 2R_11180139_SNP [dm6]	A	T	2.929e^-4	0.833	INTRON shn
3L	8524135	3L_8524135_SNP [dm3] 3L_8531035_SNP [dm6]	G	A	2.936e^-4	0.833	SYNONYMOUS_CODING foi	TF binding site mE1_TFBS_cad
2L	8782999	2L_8782999_SNP [dm3] 2L_8782999_SNP [dm6]	T	C	2.937e^-4	0.833	UPSTREAM CG42710 INTERGENIC
2R	15095319	2R_15095319_SNP [dm3] 2R_19207814_SNP [dm6]	C	T	2.961e^-4	0.833	INTRON hppy
3R	18022895	3R_18022895_SNP [dm3] 3R_22197173_SNP [dm6]	G	A	2.970e^-4	0.833	INTRON SKIP & 1 other
2L	7963065	2L_7963065_SNP [dm3] 2L_7963065_SNP [dm6]	A	T	2.974e^-4	0.833	INTRON Snoo
X	6489885	X_6489885_SNP [dm3] X_6595852_SNP [dm6]	T	G	2.976e^-4	0.833	UTR_3_PRIME Pat1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	22017629	2L_22017629_SNP [dm3] 2L_22017629_SNP [dm6]	G	A	2.980e^-4	0.833	DOWNSTREAM CG31693 INTERGENIC
2L	15996821	2L_15996821_SNP [dm3] 2L_15996821_SNP [dm6]	G	A	2.980e^-4	0.833	INTERGENIC
X	16307736	X_16307736_SNP [dm3] X_16413703_SNP [dm6]	G	A	2.981e^-4	0.833	SYNONYMOUS_CODING CG4301
2R	9540712	2R_9540712_SNP [dm3] 2R_13653207_SNP [dm6]	T	C	2.993e^-4	0.833	INTRON fas	TF binding site BDTNP1_TFBS_twi
3R	7369247	3R_7369247_SNP [dm3] 3R_11543525_SNP [dm6]	T	A	3.000e^-4	0.833	UPSTREAM dpr4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	4678288	3L_4678288_SNP [dm3] 3L_4678288_SNP [dm6]	G	A	3.001e^-4	0.833	DOWNSTREAM CG34266 INTRON axo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21770856	2L_21770856_SNP [dm3] 2L_21770856_SNP [dm6]	G	A	3.004e^-4	0.833	INTRON CG31612
2L	12154033	2L_12154033_SNP [dm3] 2L_12154033_SNP [dm6]	C	T	3.009e^-4	0.833	INTRON CG31760
2L	12154035	2L_12154035_SNP [dm3] 2L_12154035_SNP [dm6]	C	T	3.009e^-4	0.833	INTRON CG31760
2L	12154039	2L_12154039_INS [dm3] 2L_12154039_INS [dm6]	T	AGTAC	3.009e^-4	0.833	INTRON CG31760
2L	12154044	2L_12154044_SNP [dm3] 2L_12154044_SNP [dm6]	C	A	3.009e^-4	0.833	INTRON CG31760
2L	12154045	2L_12154045_SNP [dm3] 2L_12154045_SNP [dm6]	C	T	3.009e^-4	0.833	INTRON CG31760
2L	12154047	2L_12154047_SNP [dm3] 2L_12154047_SNP [dm6]	A	T	3.009e^-4	0.833	INTRON CG31760
2L	12154049	2L_12154049_SNP [dm3] 2L_12154049_SNP [dm6]	A	T	3.009e^-4	0.833	INTRON CG31760
2R	3077465	2R_3077465_SNP [dm3] 2R_7189960_SNP [dm6]	C	A	3.010e^-4	0.833	INTRON pk
2L	21771561	2L_21771561_SNP [dm3] 2L_21771561_SNP [dm6]	G	A	3.011e^-4	0.833	INTRON CG31612
2L	12153944	2L_12153944_SNP [dm3] 2L_12153944_SNP [dm6]	G	A	3.012e^-4	0.833	SYNONYMOUS_CODING CG31760
2L	12154016	2L_12154016_SNP [dm3] 2L_12154016_SNP [dm6]	C	T	3.012e^-4	0.833	INTRON CG31760
2L	12261116	2L_12261116_DEL [dm3] 2L_12261116_DEL [dm6]	TTG	A	3.014e^-4	0.833	INTRON aret	insulator Insulator_Class_II.mE01
3L	1853324	3L_1853324_SNP [dm3] 3L_1853324_SNP [dm6]	C	T	3.016e^-4	0.833	INTRON CG13936
2R	8137206	2R_8137206_SNP [dm3] 2R_12249701_SNP [dm6]	T	C	3.022e^-4	0.833	INTERGENIC
2R	5873269	2R_5873269_INS [dm3] 2R_9985764_INS [dm6]	G	GGTCGTTC	3.028e^-4	0.833	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5055776	2R_5055776_SNP [dm3] 2R_9168271_SNP [dm6]	T	C	3.030e^-4	0.833	UPSTREAM CG42382 DOWNSTREAM Rad51C INTRON Rme-8	TF binding site mE1_TFBS_cad
2R	6451279	2R_6451279_SNP [dm3] 2R_10563774_SNP [dm6]	C	A	3.030e^-4	0.833	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	9567338	2L_9567338_SNP [dm3] 2L_9567338_SNP [dm6]	T	A	3.031e^-4	0.833	UPSTREAM jp DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	1696288	2L_1696288_SNP [dm3] 2L_1696288_SNP [dm6]	A	G	3.045e^-4	0.836	NON_SYNONYMOUS_CODING chinmo UTR_3_PRIME chinmo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1646321	3L_1646321_SNP [dm3] 3L_1646321_SNP [dm6]	G	T	3.077e^-4	0.84	SYNONYMOUS_CODING CG17249 DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16987288	3R_16987288_SNP [dm3] 3R_21161566_SNP [dm6]	T	C	3.080e^-4	0.84	UPSTREAM CG10824 INTRON SNF4Agamma
2L	8824671	2L_8824671_SNP [dm3] 2L_8824671_SNP [dm6]	A	G	3.091e^-4	0.84	UPSTREAM SoxN INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	6254261	X_6254261_SNP [dm3] X_6360228_SNP [dm6]	C	T	3.091e^-4	0.84	SYNONYMOUS_CODING kdn
2L	9568691	2L_9568691_SNP [dm3] 2L_9568691_SNP [dm6]	C	T	3.092e^-4	0.84	UPSTREAM CG3838 EXON CR44149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	12545025	2R_12545025_INS [dm3] 2R_16657520_INS [dm6]	T	TATTTCACTAAATCTGTAAA...	3.093e^-4	0.84	INTRON Picot
2L	12171953	2L_12171953_SNP [dm3] 2L_12171953_SNP [dm6]	G	C	3.095e^-4	0.84	DOWNSTREAM CG17217 INTRON CG6583	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	676582	2L_676582_SNP [dm3] 2L_676582_SNP [dm6]	A	G	3.095e^-4	0.84	INTRON ds
X	234927	X_234927_SNP [dm3] X_340894_SNP [dm6]	C	A	3.109e^-4	0.842	INTRON CG3777 & 1 other
3R	14597551	3R_14597551_SNP [dm3] 3R_18771829_SNP [dm6]	T	G	3.112e^-4	0.842	INTRON CG7720
X	19871357	X_19871357_SNP [dm3] X_19977324_SNP [dm6]	C	A	3.118e^-4	0.842	INTERGENIC
2R	13803068	2R_13803068_SNP [dm3] 2R_17915563_SNP [dm6]	G	A	3.130e^-4	0.843	INTRON Elk
3R	7276897	3R_7276897_SNP [dm3] 3R_11451175_SNP [dm6]	C	T	3.132e^-4	0.843	UPSTREAM sals INTRON CG17230 & 1 other
3R	16143458	3R_16143458_SNP [dm3] 3R_20317736_SNP [dm6]	C	A	3.135e^-4	0.843	UPSTREAM CG42668 INTRON CG42668
2L	21778685	2L_21778685_SNP [dm3] 2L_21778685_SNP [dm6]	A	C	3.146e^-4	0.845	INTRON CG31612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9540708	2R_9540708_SNP [dm3] 2R_13653203_SNP [dm6]	C	T	3.167e^-4	0.846	INTRON fas	TF binding site BDTNP1_TFBS_twi
2R	15715160	2R_15715160_SNP [dm3] 2R_19827655_SNP [dm6]	G	A	3.180e^-4	0.846	NON_SYNONYMOUS_CODING Toll-7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	21802262	2L_21802262_SNP [dm3] 2L_21802262_SNP [dm6]	A	G	3.197e^-4	0.846	INTERGENIC
3L	14926507	3L_14926507_SNP [dm3] 3L_14933407_SNP [dm6]	C	A	3.205e^-4	0.846	INTRON DCX-EMAP
2L	11220246	2L_11220246_SNP [dm3] 2L_11220246_SNP [dm6]	A	C	3.212e^-4	0.846	INTRON ab	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16022615	2R_16022615_SNP [dm3] 2R_20135110_SNP [dm6]	G	T	3.213e^-4	0.846	INTERGENIC
2L	8567453	2L_8567453_SNP [dm3] 2L_8567453_SNP [dm6]	C	G	3.215e^-4	0.846	INTRON Sema-1a
2R	3003748	2R_3003748_SNP [dm3] 2R_7116243_SNP [dm6]	C	A	3.223e^-4	0.846	INTRON esn	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14296166	3R_14296166_SNP [dm3] 3R_18470444_SNP [dm6]	A	T	3.224e^-4	0.846	INTRON fru
2R	12011772	2R_12011772_SNP [dm3] 2R_16124267_SNP [dm6]	T	A	3.226e^-4	0.846	UPSTREAM spin INTRON CG30095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_Ubx
3L	3999147	3L_3999147_INS [dm3] 3L_3999147_INS [dm6]	C	CCTCACTTT	3.228e^-4	0.846	INTERGENIC
3R	7367748	3R_7367748_SNP [dm3] 3R_11542026_SNP [dm6]	G	T	3.230e^-4	0.846	INTRON dpr4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	5111407	X_5111407_SNP [dm3] X_5217374_SNP [dm6]	A	G	3.242e^-4	0.846	INTRON CG15465 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	7470072	3L_7470072_SNP [dm3] 3L_7476972_SNP [dm6]	T	A	3.243e^-4	0.846	DOWNSTREAM CG43292 INTERGENIC
2R	16923365	2R_16923365_SNP [dm3] 2R_21035860_SNP [dm6]	C	G	3.251e^-4	0.846	INTERGENIC
2L	19034628	2L_19034628_SNP [dm3] 2L_19034628_SNP [dm6]	T	A	3.256e^-4	0.846	UTR_5_PRIME mib2 UPSTREAM mib2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3L	11882529	3L_11882529_SNP [dm3] 3L_11889429_SNP [dm6]	C	G	3.257e^-4	0.846	UPSTREAM CG5897 INTRON CG44837
X	21081254	X_21081254_SNP [dm3] X_21210227_SNP [dm6]	T	A	3.262e^-4	0.846	INTRON CG32521
3L	3016231	3L_3016231_SNP [dm3] 3L_3016231_SNP [dm6]	T	G	3.265e^-4	0.846	SYNONYMOUS_CODING CG32487 UPSTREAM CG32488
3L	14370112	3L_14370112_SNP [dm3] 3L_14377012_SNP [dm6]	C	A	3.273e^-4	0.846	INTERGENIC
3L	8547701	3L_8547701_SNP [dm3] 3L_8554601_SNP [dm6]	A	G	3.278e^-4	0.846	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8547718	3L_8547718_SNP [dm3] 3L_8554618_SNP [dm6]	C	A	3.278e^-4	0.846	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19443694	2R_19443694_SNP [dm3] 2R_23556171_SNP [dm6]	T	G	3.284e^-4	0.846	UTR_5_PRIME Rrp4 UPSTREAM ItgalphaPS5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12190660	2L_12190660_SNP [dm3] 2L_12190660_SNP [dm6]	C	T	3.287e^-4	0.846	INTRON aret
3R	8591424	3R_8591424_SNP [dm3] 3R_12765702_SNP [dm6]	A	G	3.291e^-4	0.846	INTRON beat-Vc
2R	18062909	2R_18062909_SNP [dm3] 2R_22175404_SNP [dm6]	C	G	3.294e^-4	0.846	SYNONYMOUS_CODING CG6758 UPSTREAM CG3045 EXON CR45151	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	24667341	3R_24667341_SNP [dm3] 3R_28841619_SNP [dm6]	G	A	3.302e^-4	0.846	INTRON Apc	TF binding site BDTNP1_TFBS_twi
2R	16284438	2R_16284438_INS [dm3] 2R_20396933_INS [dm6]	A	AA	3.302e^-4	0.846	INTERGENIC
3L	12632997	3L_12632997_SNP [dm3] 3L_12639897_SNP [dm6]	G	A	3.310e^-4	0.846	INTRON CR32111
3R	7359501	3R_7359501_SNP [dm3] 3R_11533779_SNP [dm6]	C	T	3.310e^-4	0.846	UTR_3_PRIME dpr4
3L	8522398	3L_8522398_INS [dm3] 3L_8529298_INS [dm6]	T	TACA	3.328e^-4	0.846	INTRON foi
X	253418	X_253418_SNP [dm3] X_359385_SNP [dm6]	G	A	3.334e^-4	0.846	INTRON CG32816 & 1 other	regulatory region REDfly_CRMs
3R	16730808	3R_16730808_SNP [dm3] 3R_20905086_SNP [dm6]	C	A	3.338e^-4	0.846	NON_SYNONYMOUS_CODING TotX INTRON CG5621
2L	13949657	2L_13949657_SNP [dm3] 2L_13949657_SNP [dm6]	T	C	3.344e^-4	0.846	INTRON Ance-3	TF binding site mE1_TFBS_sbb
X	17179326	X_17179326_SNP [dm3] X_17285293_SNP [dm6]	C	A	3.356e^-4	0.846	UPSTREAM CG8661 DOWNSTREAM Fim INTRON CG5445
2R	8446938	2R_8446938_SNP [dm3] 2R_12559433_SNP [dm6]	A	C	3.361e^-4	0.846	INTRON fra
3R	26019982	3R_26019982_SNP [dm3] 3R_30194260_SNP [dm6]	G	A	3.363e^-4	0.846	DOWNSTREAM CG15531 INTERGENIC
3L	10734158	3L_10734158_SNP [dm3] 3L_10741058_SNP [dm6]	T	C	3.367e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1376540	3L_1376540_SNP [dm3] 3L_1376540_SNP [dm6]	G	A	3.368e^-4	0.846	INTRON Ptp61F & 1 other
2R	10095020	2R_10095020_SNP [dm3] 2R_14207515_SNP [dm6]	G	A	3.369e^-4	0.846	INTRON Sox15	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	16840396	2L_16840396_SNP [dm3] 2L_16840396_SNP [dm6]	T	C	3.371e^-4	0.846	UTR_3_PRIME SclA & 1 other INTRON SclA
2L	7142075	2L_7142075_SNP [dm3] 2L_7142075_SNP [dm6]	G	A	3.371e^-4	0.846	UPSTREAM CR44612 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	246106	X_246106_SNP [dm3] X_352073_SNP [dm6]	G	A	3.382e^-4	0.846	UPSTREAM CG43182 DOWNSTREAM CG43181 INTRON CG32816
2R	20769937	2R_20769937_SNP [dm3] 2R_24882414_SNP [dm6]	A	T	3.387e^-4	0.846	UPSTREAM CR43466 & 1 other INTRON NKAIN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	492694	3L_492694_SNP [dm3] 3L_492694_SNP [dm6]	T	C	3.388e^-4	0.846	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2172367	3L_2172367_SNP [dm3] 3L_2172367_SNP [dm6]	G	A	3.391e^-4	0.846	DOWNSTREAM CG15820 EXON CR15821
2R	16805261	2R_16805261_SNP [dm3] 2R_20917756_SNP [dm6]	T	A	3.395e^-4	0.846	INTRON Rx
3L	4678248	3L_4678248_SNP [dm3] 3L_4678248_SNP [dm6]	G	A	3.397e^-4	0.846	DOWNSTREAM CG34266 INTRON axo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10204066	X_10204066_SNP [dm3] X_10310033_SNP [dm6]	G	T	3.400e^-4	0.846	UPSTREAM alpha-Man-I INTRON alpha-Man-I
2R	12011764	2R_12011764_SNP [dm3] 2R_16124259_SNP [dm6]	G	T	3.402e^-4	0.846	SPLICE_SITE_REGION CG30095 UPSTREAM spin INTRON CG30095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_Ubx
2R	13595921	2R_13595921_SNP [dm3] 2R_17708416_SNP [dm6]	T	C	3.404e^-4	0.846	INTRON CG6424
3R	16731493	3R_16731493_SNP [dm3] 3R_20905771_SNP [dm6]	G	T	3.407e^-4	0.846	UPSTREAM TotX INTRON CG5621
2L	9598893	2L_9598893_SNP [dm3] 2L_9598893_SNP [dm6]	C	T	3.407e^-4	0.846	UTR_3_PRIME CG4382	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5885675	3L_5885675_SNP [dm3] 3L_5892575_SNP [dm6]	A	T	3.408e^-4	0.846	INTERGENIC
2R	18066047	2R_18066047_SNP [dm3] 2R_22178542_SNP [dm6]	A	G	3.408e^-4	0.846	INTRON CG11170
2L	12154027	2L_12154027_MNP [dm3] 2L_12154027_MNP [dm6]	AAC	TTG	3.409e^-4	0.846	INTRON CG31760
2L	21283021	2L_21283021_SNP [dm3] 2L_21283021_SNP [dm6]	C	G	3.409e^-4	0.846	DOWNSTREAM CG8671 EXON Cyp6t2Psi
2L	12154063	2L_12154063_SNP [dm3] 2L_12154063_SNP [dm6]	G	T	3.412e^-4	0.846	INTRON CG31760
X	7611716	X_7611716_SNP [dm3] X_7717683_SNP [dm6]	C	T	3.418e^-4	0.846	INTRON CG15478
2R	11471364	2R_11471364_SNP [dm3] 2R_15583859_SNP [dm6]	T	G	3.442e^-4	0.847	INTERGENIC
X	3186072	X_3186072_SNP [dm3] X_3292039_SNP [dm6]	A	G	3.444e^-4	0.847	INTRON dnc
3R	14229364	3R_14229364_SNP [dm3] 3R_18403642_SNP [dm6]	C	A	3.456e^-4	0.847	UPSTREAM CG12333 INTRON koko	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	7276527	3R_7276527_SNP [dm3] 3R_11450805_SNP [dm6]	C	T	3.459e^-4	0.847	INTRON CG17230 & 1 other
3L	6690104	3L_6690104_INS [dm3] 3L_6697004_INS [dm6]	T	TTTAGTCATTTTAATTAGGG...	3.461e^-4	0.847	INTRON SP1173
2L	3938508	2L_3938508_SNP [dm3] 2L_3938508_SNP [dm6]	A	T	3.471e^-4	0.847	INTRON fred
2L	3938510	2L_3938510_INS [dm3] 2L_3938510_INS [dm6]	T	TT	3.471e^-4	0.847	INTRON fred
3L	1283374	3L_1283374_SNP [dm3] 3L_1283374_SNP [dm6]	T	G	3.483e^-4	0.847	INTRON CG32333
2R	14149109	2R_14149109_SNP [dm3] 2R_18261604_SNP [dm6]	C	T	3.509e^-4	0.847	INTERGENIC
X	8736721	X_8736721_SNP [dm3] X_8842688_SNP [dm6]	T	G	3.511e^-4	0.847	INTRON CG12075
3L	1561176	3L_1561176_SNP [dm3] 3L_1561176_SNP [dm6]	C	T	3.511e^-4	0.847	SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
X	20653161	X_20653161_SNP [dm3] X_20782134_SNP [dm6]	A	G	3.525e^-4	0.847	UPSTREAM CG32507 INTRON shakB
3R	19625870	3R_19625870_SNP [dm3] 3R_23800148_SNP [dm6]	G	A	3.528e^-4	0.847	NON_SYNONYMOUS_CODING mbc
2L	17418389	2L_17418389_SNP [dm3] 2L_17418389_SNP [dm6]	T	G	3.529e^-4	0.847	INTRON Dif	TF binding site mE1_TFBS_cad
3L	7741172	3L_7741172_SNP [dm3] 3L_7748072_SNP [dm6]	C	G	3.533e^-4	0.847	SYNONYMOUS_CODING CG13685 INTRON CG32373	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16805224	2R_16805224_SNP [dm3] 2R_20917719_SNP [dm6]	T	C	3.538e^-4	0.847	INTRON Rx
3L	9726892	3L_9726892_SNP [dm3] 3L_9733792_SNP [dm6]	G	A	3.541e^-4	0.847	NON_SYNONYMOUS_CODING CG6749 UPSTREAM mir-4986 DOWNSTREAM CG42268
3L	9726895	3L_9726895_SNP [dm3] 3L_9733795_SNP [dm6]	T	G	3.541e^-4	0.847	NON_SYNONYMOUS_CODING CG6749 UPSTREAM mir-4986 DOWNSTREAM CG42268
3L	15733477	3L_15733477_SNP [dm3] 3L_15740377_SNP [dm6]	C	T	3.541e^-4	0.847	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	8866484	3L_8866484_SNP [dm3] 3L_8873384_SNP [dm6]	G	T	3.541e^-4	0.847	INTRON dally	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8518875	3L_8518875_SNP [dm3] 3L_8525775_SNP [dm6]	A	G	3.550e^-4	0.847	UPSTREAM GstO1 INTRON foi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	14388580	3R_14388580_SNP [dm3] 3R_18562858_SNP [dm6]	A	G	3.554e^-4	0.847	INTERGENIC
2L	9569454	2L_9569454_SNP [dm3] 2L_9569454_SNP [dm6]	G	C	3.566e^-4	0.847	UPSTREAM CR44149 & 1 other INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	394905	2L_394905_SNP [dm3] 2L_394905_SNP [dm6]	T	G	3.570e^-4	0.847	INTERGENIC
2R	13806944	2R_13806944_SNP [dm3] 2R_17919439_SNP [dm6]	G	A	3.571e^-4	0.847	INTRON Elk
3L	11882519	3L_11882519_SNP [dm3] 3L_11889419_SNP [dm6]	T	C	3.573e^-4	0.847	UPSTREAM CG5897 INTRON CG44837
3L	11882520	3L_11882520_INS [dm3] 3L_11889420_INS [dm6]	A	AT	3.573e^-4	0.847	UPSTREAM CG5897 INTRON CG44837
3L	9961388	3L_9961388_SNP [dm3] 3L_9968288_SNP [dm6]	C	T	3.580e^-4	0.847	NON_SYNONYMOUS_CODING CG6685 UPSTREAM Nc DOWNSTREAM CG34356	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3L	10733914	3L_10733914_SNP [dm3] 3L_10740814_SNP [dm6]	T	G	3.583e^-4	0.847	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10486934	3L_10486934_SNP [dm3] 3L_10493834_SNP [dm6]	C	T	3.609e^-4	0.847	DOWNSTREAM S-Lap4 INTRON A2bp1
X	9499442	X_9499442_SNP [dm3] X_9605409_SNP [dm6]	C	T	3.615e^-4	0.847	SYNONYMOUS_CODING Lst8 DOWNSTREAM Aats-lys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	11374443	3L_11374443_SNP [dm3] 3L_11381343_SNP [dm6]	T	C	3.618e^-4	0.847	INTERGENIC
2L	21759276	2L_21759276_SNP [dm3] 2L_21759276_SNP [dm6]	C	T	3.622e^-4	0.847	SYNONYMOUS_CODING CG1416
2L	11849869	2L_11849869_DEL [dm3] 2L_11849869_DEL [dm6]	TTTTA	G	3.623e^-4	0.847	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
2L	9571523	2L_9571523_SNP [dm3] 2L_9571523_SNP [dm6]	C	G	3.632e^-4	0.847	SYNONYMOUS_CODING CG3838
2L	12190670	2L_12190670_SNP [dm3] 2L_12190670_SNP [dm6]	A	T	3.635e^-4	0.847	INTRON aret
3R	9850369	3R_9850369_SNP [dm3] 3R_14024647_SNP [dm6]	A	G	3.636e^-4	0.847	INTRON rdx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10053627	2L_10053627_SNP [dm3] 2L_10053627_SNP [dm6]	C	G	3.639e^-4	0.847	UPSTREAM Cpr31A EXON CR44875
2R	7119008	2R_7119008_SNP [dm3] 2R_11231503_SNP [dm6]	A	T	3.647e^-4	0.847	INTRON metro	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	14469485	2L_14469485_SNP [dm3] 2L_14469485_SNP [dm6]	C	T	3.652e^-4	0.847	INTERGENIC
2L	10227402	2L_10227402_SNP [dm3] 2L_10227402_SNP [dm6]	G	A	3.653e^-4	0.847	UPSTREAM CG5708 DOWNSTREAM CG5694 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	2835813	2L_2835813_SNP [dm3] 2L_2835813_SNP [dm6]	C	T	3.666e^-4	0.847	DOWNSTREAM CG3119 INTRON CG3119
3L	2652927	3L_2652927_SNP [dm3] 3L_2652927_SNP [dm6]	C	T	3.675e^-4	0.847	NON_SYNONYMOUS_CODING Snup UTR_5_PRIME CG42304 UPSTREAM CG42304	TF binding site mE1_TFBS_cad
3R	14225705	3R_14225705_SNP [dm3] 3R_18399983_SNP [dm6]	T	G	3.679e^-4	0.847	UPSTREAM Vha100-2 DOWNSTREAM CG12333 INTRON CG44009	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	17725920	2R_17725920_SNP [dm3] 2R_21838415_SNP [dm6]	C	T	3.691e^-4	0.847	SYNONYMOUS_CODING CG4372
3L	1406565	3L_1406565_SNP [dm3] 3L_1406565_SNP [dm6]	A	G	3.691e^-4	0.847	INTRON Ptp61F
2R	13806969	2R_13806969_SNP [dm3] 2R_17919464_SNP [dm6]	T	A	3.710e^-4	0.847	INTRON Elk
2R	3079950	2R_3079950_SNP [dm3] 2R_7192445_SNP [dm6]	T	G	3.713e^-4	0.847	INTRON pk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	19450990	3R_19450990_SNP [dm3] 3R_23625268_SNP [dm6]	A	G	3.714e^-4	0.847	INTRON CG31145
2R	14074970	2R_14074970_SNP [dm3] 2R_18187465_SNP [dm6]	C	T	3.720e^-4	0.847	UPSTREAM CG14499 INTRON CG33958
3R	10133532	3R_10133532_SNP [dm3] 3R_14307810_SNP [dm6]	G	T	3.720e^-4	0.847	NON_SYNONYMOUS_CODING su_Hw_	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	404169	2L_404169_SNP [dm3] 2L_404169_SNP [dm6]	G	T	3.720e^-4	0.847	UPSTREAM RpI135 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_Ubx
3R	10913372	3R_10913372_SNP [dm3] 3R_15087650_SNP [dm6]	T	C	3.725e^-4	0.847	INTRON CG6966
2L	2886658	2L_2886658_DEL [dm3] 2L_2886658_DEL [dm6]	TTT	T	3.727e^-4	0.847	UPSTREAM NTPase INTRON lilli	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl mE1_TFBS_zfh1
3R	26276376	3R_26276376_SNP [dm3] 3R_30450654_SNP [dm6]	C	A	3.734e^-4	0.847	UPSTREAM aralar1 INTRON aralar1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	12796660	2L_12796660_DEL [dm3] 2L_12796660_DEL [dm6]	ACACACA	A	3.743e^-4	0.847	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	18885261	2L_18885261_SNP [dm3] 2L_18885261_SNP [dm6]	C	G	3.764e^-4	0.847	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	12154054	2L_12154054_SNP [dm3] 2L_12154054_SNP [dm6]	A	T	3.764e^-4	0.847	INTRON CG31760
2L	12154061	2L_12154061_SNP [dm3] 2L_12154061_SNP [dm6]	A	T	3.764e^-4	0.847	INTRON CG31760
2L	12042251	2L_12042251_SNP [dm3] 2L_12042251_SNP [dm6]	A	T	3.780e^-4	0.847	INTRON CG6785	TF binding site mE1_TFBS_chinmo
3R	13163039	3R_13163039_DEL [dm3] 3R_17337317_DEL [dm6]	CTAAATGAGCCGTTGGC...	C	3.781e^-4	0.847	INTRON beat-IIa
X	15281412	X_15281412_DEL [dm3] X_15387379_DEL [dm6]	AG	A	3.781e^-4	0.847	UTR_3_PRIME Cngl
2R	16361176	2R_16361176_SNP [dm3] 2R_20473671_SNP [dm6]	A	G	3.794e^-4	0.847	INTRON CG12484
2L	10227319	2L_10227319_SNP [dm3] 2L_10227319_SNP [dm6]	A	T	3.797e^-4	0.847	UPSTREAM CG5708 DOWNSTREAM CG5694 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	19033044	2L_19033044_SNP [dm3] 2L_19033044_SNP [dm6]	A	T	3.808e^-4	0.847	NON_SYNONYMOUS_CODING hk DOWNSTREAM CG31800	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	19034458	2L_19034458_SNP [dm3] 2L_19034458_SNP [dm6]	T	A	3.808e^-4	0.847	UTR_5_PRIME mib2 & 1 other UPSTREAM hk & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2L	19034463	2L_19034463_SNP [dm3] 2L_19034463_SNP [dm6]	C	T	3.808e^-4	0.847	START_GAINED mib2 UTR_5_PRIME mib2 & 1 other UPSTREAM hk & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2L	19035562	2L_19035562_SNP [dm3] 2L_19035562_SNP [dm6]	A	G	3.808e^-4	0.847	UTR_5_PRIME mib2 UPSTREAM CG31800 INTRON mib2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	15657747	3R_15657747_SNP [dm3] 3R_19832025_SNP [dm6]	A	G	3.821e^-4	0.847	INTRON bnl
2R	8446862	2R_8446862_SNP [dm3] 2R_12559357_SNP [dm6]	A	T	3.828e^-4	0.847	INTRON fra
2L	12190664	2L_12190664_SNP [dm3] 2L_12190664_SNP [dm6]	C	T	3.830e^-4	0.847	INTRON aret
2R	13806963	2R_13806963_SNP [dm3] 2R_17919458_SNP [dm6]	A	T	3.831e^-4	0.847	INTRON Elk
2R	13806974	2R_13806974_SNP [dm3] 2R_17919469_SNP [dm6]	A	C	3.831e^-4	0.847	INTRON Elk
3L	10456281	3L_10456281_SNP [dm3] 3L_10463181_SNP [dm6]	C	G	3.835e^-4	0.847	UPSTREAM CG32061 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	13562065	2R_13562065_SNP [dm3] 2R_17674560_SNP [dm6]	G	A	3.835e^-4	0.847	INTRON Sema-1b
2R	4481239	2R_4481239_SNP [dm3] 2R_8593734_SNP [dm6]	A	G	3.836e^-4	0.847	DOWNSTREAM CG43183 & 1 other INTERGENIC
2R	10559134	2R_10559134_SNP [dm3] 2R_14671629_SNP [dm6]	T	C	3.837e^-4	0.847	UTR_3_PRIME CG12866 & 1 other DOWNSTREAM mspo
3L	11420904	3L_11420904_DEL [dm3] 3L_11427804_DEL [dm6]	TA	T	3.844e^-4	0.847	INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	4678283	3L_4678283_SNP [dm3] 3L_4678283_SNP [dm6]	T	A	3.851e^-4	0.847	DOWNSTREAM CG34266 INTRON axo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14689608	2L_14689608_SNP [dm3] 2L_14689608_SNP [dm6]	A	G	3.858e^-4	0.847	UPSTREAM osp INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	16987333	3R_16987333_SNP [dm3] 3R_21161611_SNP [dm6]	C	A	3.875e^-4	0.847	UPSTREAM CG10824 INTRON SNF4Agamma
2L	12154052	2L_12154052_SNP [dm3] 2L_12154052_SNP [dm6]	A	C	3.889e^-4	0.847	INTRON CG31760
3L	3384755	3L_3384755_INS [dm3] 3L_3384755_INS [dm6]	T	TATGT	3.890e^-4	0.847	INTERGENIC
3L	718324	3L_718324_SNP [dm3] 3L_718324_SNP [dm6]	C	G	3.895e^-4	0.847	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7937550	2L_7937550_SNP [dm3] 2L_7937550_SNP [dm6]	A	G	3.898e^-4	0.847	INTRON Snoo
2L	442153	2L_442153_SNP [dm3] 2L_442153_SNP [dm6]	A	C	3.903e^-4	0.847	INTRON ex	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11221266	3L_11221266_SNP [dm3] 3L_11228166_SNP [dm6]	T	A	3.908e^-4	0.847	UTR_3_PRIME CG42671 INTRON CG42671	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6254381	X_6254381_SNP [dm3] X_6360348_SNP [dm6]	A	G	3.921e^-4	0.847	SYNONYMOUS_CODING kdn
3R	17150973	3R_17150973_SNP [dm3] 3R_21325251_SNP [dm6]	G	A	3.938e^-4	0.847	INTRON CG16791
X	8430534	X_8430534_SNP [dm3] X_8536501_SNP [dm6]	C	A	3.938e^-4	0.847	INTRON Nrg
2L	8781091	2L_8781091_SNP [dm3] 2L_8781091_SNP [dm6]	T	A	3.966e^-4	0.847	DOWNSTREAM CG42710 INTRON CG9468
3L	15728478	3L_15728478_SNP [dm3] 3L_15735378_SNP [dm6]	G	A	3.966e^-4	0.847	INTERGENIC
3R	16294728	3R_16294728_SNP [dm3] 3R_20469006_SNP [dm6]	C	T	3.971e^-4	0.847	INTRON Gfrl
3L	355563	3L_355563_SNP [dm3] 3L_355563_SNP [dm6]	C	T	3.980e^-4	0.847	UTR_3_PRIME Ptpmeg UPSTREAM CG1231
2L	6601340	2L_6601340_SNP [dm3] 2L_6601340_SNP [dm6]	C	T	4.004e^-4	0.847	UPSTREAM CG11319 INTERGENIC
3R	22422801	3R_22422801_SNP [dm3] 3R_26597079_SNP [dm6]	A	T	4.014e^-4	0.847	DOWNSTREAM scrib INTRON scrib
3L	3819425	3L_3819425_SNP [dm3] 3L_3819425_SNP [dm6]	C	T	4.015e^-4	0.847	INTRON enc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	16504341	2L_16504341_SNP [dm3] 2L_16504341_SNP [dm6]	A	G	4.021e^-4	0.847	INTRON Tpr2
2R	16817260	2R_16817260_SNP [dm3] 2R_20929755_SNP [dm6]	T	G	4.030e^-4	0.847	INTRON Rx
3L	8866315	3L_8866315_SNP [dm3] 3L_8873215_SNP [dm6]	C	T	4.036e^-4	0.847	INTRON dally	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7937633	2L_7937633_SNP [dm3] 2L_7937633_SNP [dm6]	G	C	4.043e^-4	0.847	INTRON Snoo
X	10210715	X_10210715_SNP [dm3] X_10316682_SNP [dm6]	G	A	4.044e^-4	0.847	INTRON alpha-Man-I
2R	13931763	2R_13931763_SNP [dm3] 2R_18044258_SNP [dm6]	A	C	4.049e^-4	0.847	UTR_3_PRIME CG5770 UPSTREAM CG5773
2R	10614869	2R_10614869_SNP [dm3] 2R_14727364_SNP [dm6]	G	A	4.050e^-4	0.847	INTERGENIC
2R	15272510	2R_15272510_SNP [dm3] 2R_19385005_SNP [dm6]	G	T	4.057e^-4	0.847	UPSTREAM CG10081 DOWNSTREAM CG10073 INTERGENIC
2R	14050808	2R_14050808_SNP [dm3] 2R_18163303_SNP [dm6]	C	T	4.065e^-4	0.847	SYNONYMOUS_CODING CG10915	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2275044	2L_2275044_SNP [dm3] 2L_2275044_SNP [dm6]	T	A	4.066e^-4	0.847	DOWNSTREAM CR43753 INTRON CR43753
2R	3057882	2R_3057882_SNP [dm3] 2R_7170377_SNP [dm6]	A	T	4.066e^-4	0.847	INTRON pk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1646534	3L_1646534_SNP [dm3] 3L_1646534_SNP [dm6]	A	G	4.071e^-4	0.847	SYNONYMOUS_CODING CG17249 DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4126906	2L_4126906_SNP [dm3] 2L_4126906_SNP [dm6]	C	A	4.075e^-4	0.847	INTERGENIC
2R	11724886	2R_11724886_SNP [dm3] 2R_15837381_SNP [dm6]	A	G	4.075e^-4	0.847	INTRON tun	regulatory region REDfly_CRMs
3R	24151899	3R_24151899_SNP [dm3] 3R_28326177_SNP [dm6]	A	T	4.077e^-4	0.847	UTR_5_PRIME larp INTRON larp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14386194	2R_14386194_SNP [dm3] 2R_18498689_SNP [dm6]	T	C	4.077e^-4	0.847	UPSTREAM CG30116 INTERGENIC
X	17017942	X_17017942_SNP [dm3] X_17123909_SNP [dm6]	G	T	4.081e^-4	0.847	INTRON CG5004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb
2R	12544954	2R_12544954_SNP [dm3] 2R_16657449_SNP [dm6]	G	C	4.083e^-4	0.847	INTRON Picot
3R	26079926	3R_26079926_SNP [dm3] 3R_30254204_SNP [dm6]	A	G	4.085e^-4	0.847	DOWNSTREAM CG18404 INTERGENIC
2L	5337807	2L_5337807_SNP [dm3] 2L_5337807_SNP [dm6]	A	G	4.088e^-4	0.847	UTR_5_PRIME fusl INTRON fusl
2R	9466925	2R_9466925_SNP [dm3] 2R_13579420_SNP [dm6]	C	G	4.097e^-4	0.847	DOWNSTREAM CG6191 EXON CR44366	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	19994212	X_19994212_SNP [dm3] X_20100179_SNP [dm6]	T	C	4.102e^-4	0.847	INTERGENIC	transposable element FlyBase
3R	8068496	3R_8068496_SNP [dm3] 3R_12242774_SNP [dm6]	C	A	4.108e^-4	0.847	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	20021457	2R_20021457_SNP [dm3] 2R_24133934_SNP [dm6]	A	C	4.109e^-4	0.847	UPSTREAM Zfrp8 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	16871562	2R_16871562_SNP [dm3] 2R_20984057_SNP [dm6]	T	A	4.109e^-4	0.847	UTR_3_PRIME CG15651 DOWNSTREAM CG9313
X	19871141	X_19871141_SNP [dm3] X_19977108_SNP [dm6]	T	C	4.111e^-4	0.847	INTERGENIC
3R	6346731	3R_6346731_SNP [dm3] 3R_10521009_SNP [dm6]	T	A	4.120e^-4	0.847	INTRON hth
2R	17730873	2R_17730873_SNP [dm3] 2R_21843368_SNP [dm6]	C	A	4.121e^-4	0.847	UPSTREAM tRNA:CR30407 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	4053630	3L_4053630_SNP [dm3] 3L_4053630_SNP [dm6]	T	C	4.122e^-4	0.847	INTRON CG1136
2L	2835873	2L_2835873_INS [dm3] 2L_2835873_INS [dm6]	C	CC	4.122e^-4	0.847	DOWNSTREAM CG3119 INTRON CG3119
X	7064185	X_7064185_SNP [dm3] X_7170152_SNP [dm6]	C	T	4.129e^-4	0.847	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4839458	3L_4839458_SNP [dm3] 3L_4839458_SNP [dm6]	T	A	4.136e^-4	0.847	START_GAINED CG13707 UTR_5_PRIME CG13707 INTRON CG13707
2R	12488230	2R_12488230_INS [dm3] 2R_16600725_INS [dm6]	T	TT	4.137e^-4	0.847	DOWNSTREAM CG5089 INTRON CG8303
3R	26080147	3R_26080147_SNP [dm3] 3R_30254425_SNP [dm6]	T	G	4.145e^-4	0.847	DOWNSTREAM CG18404 INTERGENIC
3L	14337354	3L_14337354_SNP [dm3] 3L_14344254_SNP [dm6]	G	C	4.152e^-4	0.847	INTRON fz
3L	1233526	3L_1233526_SNP [dm3] 3L_1233526_SNP [dm6]	G	A	4.160e^-4	0.847	SYNONYMOUS_CODING CG33965 UPSTREAM CG33966 DOWNSTREAM mwh	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6830726	3L_6830726_DEL [dm3] 3L_6837626_DEL [dm6]	AG	A	4.167e^-4	0.847	INTERGENIC
2L	1159652	2L_1159652_SNP [dm3] 2L_1159652_SNP [dm6]	C	A	4.173e^-4	0.847	UPSTREAM CR43767 DOWNSTREAM CG5080 INTRON Tango14	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15386272	2L_15386272_INS [dm3] 2L_15386272_INS [dm6]	G	TTTC	4.178e^-4	0.847	INTERGENIC
3R	1249552	3R_1249552_SNP [dm3] 3R_5423830_SNP [dm6]	G	T	4.191e^-4	0.847	INTRON CG14669
2L	14224908	2L_14224908_SNP [dm3] 2L_14224908_SNP [dm6]	G	A	4.192e^-4	0.847	INTRON Dyrk2
3R	22653572	3R_22653572_DEL [dm3] 3R_26827850_DEL [dm6]	CC	C	4.194e^-4	0.847	INTRON Tl
X	10985539	X_10985539_SNP [dm3] X_11091506_SNP [dm6]	C	T	4.204e^-4	0.847	SYNONYMOUS_CODING CG2076 UPSTREAM CG2061 EXON CR45604	TF binding site mE1_TFBS_chinmo
3R	16996633	3R_16996633_SNP [dm3] 3R_21170911_SNP [dm6]	T	G	4.205e^-4	0.847	INTRON SNF4Agamma
2R	12410737	2R_12410737_SNP [dm3] 2R_16523232_SNP [dm6]	C	G	4.206e^-4	0.847	INTRON Sema-2a
X	15803479	X_15803479_SNP [dm3] X_15909446_SNP [dm6]	A	C	4.211e^-4	0.847	UTR_5_PRIME CycD INTRON CycD	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	9712935	2L_9712935_SNP [dm3] 2L_9712935_SNP [dm6]	T	G	4.212e^-4	0.847	UTR_3_PRIME Nckx30C	TF binding site BDTNP1_TFBS_dl
3L	11650776	3L_11650776_SNP [dm3] 3L_11657676_SNP [dm6]	G	A	4.218e^-4	0.847	DOWNSTREAM mir-274 INTRON CG32085
2L	19367892	2L_19367892_SNP [dm3] 2L_19367892_SNP [dm6]	C	A	4.224e^-4	0.847	INTERGENIC
2L	405999	2L_405999_SNP [dm3] 2L_405999_SNP [dm6]	C	T	4.236e^-4	0.847	SYNONYMOUS_CODING RpI135
2L	406017	2L_406017_SNP [dm3] 2L_406017_SNP [dm6]	C	T	4.236e^-4	0.847	SYNONYMOUS_CODING RpI135
2L	406332	2L_406332_SNP [dm3] 2L_406332_SNP [dm6]	A	C	4.236e^-4	0.847	NON_SYNONYMOUS_CODING RpI135	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	1532900	3L_1532900_SNP [dm3] 3L_1532900_SNP [dm6]	T	C	4.236e^-4	0.847	INTRON CG12090	TF binding site mE1_TFBS_cad
3L	7823372	3L_7823372_SNP [dm3] 3L_7830272_SNP [dm6]	A	G	4.240e^-4	0.847	INTRON Pdp1	TF binding site BDTNP1_TFBS_twi
2L	3449766	2L_3449766_SNP [dm3] 2L_3449766_SNP [dm6]	A	T	4.243e^-4	0.847	UTR_5_PRIME Snx1	TF binding site mE1_TFBS_cad
3R	10658695	3R_10658695_SNP [dm3] 3R_14832973_SNP [dm6]	G	A	4.250e^-4	0.847	INTRON btsz
2L	683994	2L_683994_SNP [dm3] 2L_683994_SNP [dm6]	G	A	4.250e^-4	0.847	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5873271	2R_5873271_DEL [dm3] 2R_9985766_DEL [dm6]	ACGACC	A	4.250e^-4	0.847	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2849442	2L_2849442_SNP [dm3] 2L_2849442_SNP [dm6]	C	T	4.250e^-4	0.847	UTR_3_PRIME CG3104 DOWNSTREAM CG2983	TF binding site mE1_TFBS_cad
X	2895941	X_2895941_SNP [dm3] X_3001908_SNP [dm6]	A	G	4.251e^-4	0.847	INTRON kirre
3R	1670042	3R_1670042_DEL [dm3] 3R_5844320_DEL [dm6]	TCC	G	4.258e^-4	0.847	INTRON CG1213
X	5886300	X_5886300_SNP [dm3] X_5992267_SNP [dm6]	A	G	4.260e^-4	0.847	UTR_3_PRIME CG5966	TF binding site mE1_TFBS_bab1
2L	404625	2L_404625_SNP [dm3] 2L_404625_SNP [dm6]	G	T	4.260e^-4	0.847	SYNONYMOUS_CODING RpI135	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	17589851	3L_17589851_INS [dm3] 3L_17596751_INS [dm6]	T	TT	4.262e^-4	0.847	INTRON Eip74EF	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	8068491	3R_8068491_SNP [dm3] 3R_12242769_SNP [dm6]	C	T	4.272e^-4	0.847	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	14616483	3R_14616483_SNP [dm3] 3R_18790761_SNP [dm6]	T	C	4.282e^-4	0.847	INTRON CG7720
3L	7700032	3L_7700032_SNP [dm3] 3L_7706932_SNP [dm6]	G	T	4.298e^-4	0.847	INTRON CG32373 & 1 other
3L	9726894	3L_9726894_SNP [dm3] 3L_9733794_SNP [dm6]	C	T	4.299e^-4	0.847	SYNONYMOUS_CODING CG6749 UPSTREAM mir-4986 DOWNSTREAM CG42268
2R	20021366	2R_20021366_SNP [dm3] 2R_24133843_SNP [dm6]	A	G	4.300e^-4	0.847	UPSTREAM Zfrp8 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	20909411	2R_20909411_SNP [dm3] 2R_25021888_SNP [dm6]	T	A	4.301e^-4	0.847	INTRON uzip
X	3559908	X_3559908_SNP [dm3] X_3665875_SNP [dm6]	T	A	4.301e^-4	0.847	UTR_3_PRIME AstA-R1
2L	15386274	2L_15386274_SNP [dm3] 2L_15386274_SNP [dm6]	A	T	4.303e^-4	0.847	INTERGENIC
2L	15386277	2L_15386277_INS [dm3] 2L_15386277_INS [dm6]	A	AAC	4.303e^-4	0.847	INTERGENIC
2L	14900856	2L_14900856_SNP [dm3] 2L_14900856_SNP [dm6]	A	C	4.308e^-4	0.847	INTERGENIC
2R	7107070	2R_7107070_SNP [dm3] 2R_11219565_SNP [dm6]	T	C	4.316e^-4	0.847	UTR_5_PRIME Syx6 UPSTREAM Syx6 & 1 other INTRON CG9084	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	7356174	2L_7356174_SNP [dm3] 2L_7356174_SNP [dm6]	C	G	4.320e^-4	0.847	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	8018181	X_8018181_SNP [dm3] X_8124148_SNP [dm6]	G	A	4.320e^-4	0.847	INTRON cyr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15715013	2R_15715013_SNP [dm3] 2R_19827508_SNP [dm6]	A	C	4.326e^-4	0.847	SYNONYMOUS_CODING Toll-7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	18645748	X_18645748_SNP [dm3] X_18751715_SNP [dm6]	A	G	4.330e^-4	0.847	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9501583	X_9501583_SNP [dm3] X_9607550_SNP [dm6]	A	G	4.334e^-4	0.847	SYNONYMOUS_CODING Aats-lys	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	7108288	3R_7108288_SNP [dm3] 3R_11282566_SNP [dm6]	C	A	4.339e^-4	0.847	INTRON CR31386	TF binding site mE1_TFBS_HSA
2R	19963664	2R_19963664_SNP [dm3] 2R_24076141_SNP [dm6]	G	A	4.340e^-4	0.847	DOWNSTREAM Mlp60A INTRON Mlp60A
2R	11529768	2R_11529768_SNP [dm3] 2R_15642263_SNP [dm6]	C	A	4.348e^-4	0.847	INTRON CG42524
2L	19383448	2L_19383448_DEL [dm3] 2L_19383448_DEL [dm6]	TT	T	4.351e^-4	0.847	UTR_3_PRIME fon DOWNSTREAM fon & 1 other
3L	4839460	3L_4839460_SNP [dm3] 3L_4839460_SNP [dm6]	A	G	4.352e^-4	0.847	UTR_5_PRIME CG13707 INTRON CG13707
2L	21754532	2L_21754532_SNP [dm3] 2L_21754532_SNP [dm6]	A	C	4.354e^-4	0.847	UPSTREAM step INTRON step	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	7640838	3R_7640838_SNP [dm3] 3R_11815116_SNP [dm6]	C	A	4.362e^-4	0.847	DOWNSTREAM glo INTERGENIC
2R	5412539	2R_5412539_SNP [dm3] 2R_9525034_SNP [dm6]	A	G	4.364e^-4	0.847	INTRON brp
2L	1791603	2L_1791603_SNP [dm3] 2L_1791603_SNP [dm6]	T	A	4.369e^-4	0.847	NON_SYNONYMOUS_CODING Gr22c DOWNSTREAM Gr22b
2L	8840074	2L_8840074_SNP [dm3] 2L_8840074_SNP [dm6]	T	C	4.370e^-4	0.847	INTERGENIC
2L	11849848	2L_11849848_SNP [dm3] 2L_11849848_SNP [dm6]	A	T	4.371e^-4	0.847	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
2L	4448326	2L_4448326_SNP [dm3] 2L_4448326_SNP [dm6]	G	A	4.380e^-4	0.847	DOWNSTREAM CG15439 INTRON MFS18	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	762822	2R_762822_SNP [dm3] 2R_4875317_SNP [dm6]	G	A	4.380e^-4	0.847	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
3L	1645299	3L_1645299_SNP [dm3] 3L_1645299_SNP [dm6]	T	C	4.385e^-4	0.847	UPSTREAM CG13919 & 1 other DOWNSTREAM CG17249 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	22515663	3R_22515663_SNP [dm3] 3R_26689941_SNP [dm6]	G	A	4.388e^-4	0.847	INTERGENIC
X	5743499	X_5743499_SNP [dm3] X_5849466_SNP [dm6]	A	C	4.393e^-4	0.847	INTERGENIC
3L	1853322	3L_1853322_SNP [dm3] 3L_1853322_SNP [dm6]	C	T	4.400e^-4	0.847	INTRON CG13936
3L	15728232	3L_15728232_SNP [dm3] 3L_15735132_SNP [dm6]	G	A	4.402e^-4	0.847	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	16730407	2R_16730407_INS [dm3] 2R_20842902_INS [dm6]	A	AA	4.403e^-4	0.847	INTERGENIC
2L	21785498	2L_21785498_SNP [dm3] 2L_21785498_SNP [dm6]	A	T	4.408e^-4	0.847	INTRON CG31612
3R	16985358	3R_16985358_SNP [dm3] 3R_21159636_SNP [dm6]	G	A	4.410e^-4	0.847	SYNONYMOUS_CODING CG10824 INTRON SNF4Agamma
3L	9127703	3L_9127703_SNP [dm3] 3L_9134603_SNP [dm6]	C	G	4.411e^-4	0.847	UTR_5_PRIME Dhpr UPSTREAM Dhpr & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	20345607	2R_20345607_SNP [dm3] 2R_24458084_SNP [dm6]	A	T	4.430e^-4	0.847	INTRON CG13579
2L	12154030	2L_12154030_INS [dm3] 2L_12154030_INS [dm6]	A	AT	4.435e^-4	0.847	INTRON CG31760
2L	14954308	2L_14954308_SNP [dm3] 2L_14954308_SNP [dm6]	G	C	4.439e^-4	0.847	INTRON CG42313
3R	1452439	3R_1452439_SNP [dm3] 3R_5626717_SNP [dm6]	G	T	4.439e^-4	0.847	DOWNSTREAM RpL13A INTERGENIC
2R	5807817	2R_5807817_SNP [dm3] 2R_9920312_SNP [dm6]	T	A	4.442e^-4	0.847	INTRON Mef2
2R	13806921	2R_13806921_SNP [dm3] 2R_17919416_SNP [dm6]	G	A	4.450e^-4	0.847	INTRON Elk
3R	4595388	3R_4595388_SNP [dm3] 3R_8769666_SNP [dm6]	G	A	4.450e^-4	0.847	SYNONYMOUS_CODING CG8236
2L	14393530	2L_14393530_SNP [dm3] 2L_14393530_SNP [dm6]	A	T	4.461e^-4	0.847	INTRON elB	TF binding site mE1_TFBS_cad
X	19874256	X_19874256_SNP [dm3] X_19980223_SNP [dm6]	A	G	4.464e^-4	0.847	INTERGENIC
3R	17396078	3R_17396078_SNP [dm3] 3R_21570356_SNP [dm6]	T	C	4.464e^-4	0.847	UTR_3_PRIME InR
3R	7280971	3R_7280971_SNP [dm3] 3R_11455249_SNP [dm6]	G	C	4.471e^-4	0.847	UPSTREAM PGRP-LB INTRON CG17230 & 1 other	TF binding site mE1_TFBS_inv
3R	14229381	3R_14229381_SNP [dm3] 3R_18403659_SNP [dm6]	A	G	4.472e^-4	0.847	UPSTREAM CG12333 INTRON koko	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	14343296	2R_14343296_INS [dm3] 2R_18455791_INS [dm6]	A	CGC	4.478e^-4	0.847	DOWNSTREAM CG30116 INTERGENIC
2R	15175399	2R_15175399_SNP [dm3] 2R_19287894_SNP [dm6]	G	T	4.491e^-4	0.847	UPSTREAM CG18606 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	15175401	2R_15175401_SNP [dm3] 2R_19287896_SNP [dm6]	T	C	4.491e^-4	0.847	UPSTREAM CG18606 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	10497282	3L_10497282_SNP [dm3] 3L_10504182_SNP [dm6]	A	T	4.501e^-4	0.847	INTRON A2bp1	TF binding site mE1_TFBS_HSA
3L	10497285	3L_10497285_MNP [dm3] 3L_10504185_MNP [dm6]	TTT	GAC	4.501e^-4	0.847	INTRON A2bp1	TF binding site mE1_TFBS_HSA
3L	10497290	3L_10497290_INS [dm3] 3L_10504190_INS [dm6]	TC	ATAA	4.501e^-4	0.847	INTRON A2bp1	TF binding site mE1_TFBS_HSA
3L	10497293	3L_10497293_SNP [dm3] 3L_10504193_SNP [dm6]	G	A	4.501e^-4	0.847	INTRON A2bp1	TF binding site mE1_TFBS_HSA
2L	13045789	2L_13045789_SNP [dm3] 2L_13045789_SNP [dm6]	G	A	4.501e^-4	0.847	INTRON CG9932
3R	7331866	3R_7331866_SNP [dm3] 3R_11506144_SNP [dm6]	C	T	4.509e^-4	0.847	DOWNSTREAM dpr5 INTERGENIC
3R	16710431	3R_16710431_SNP [dm3] 3R_20884709_SNP [dm6]	T	A	4.511e^-4	0.847	INTERGENIC	TF binding site mE1_TFBS_cad
2L	19383474	2L_19383474_SNP [dm3] 2L_19383474_SNP [dm6]	C	A	4.512e^-4	0.847	UTR_3_PRIME fon DOWNSTREAM fon & 1 other
2L	12080648	2L_12080648_SNP [dm3] 2L_12080648_SNP [dm6]	A	C	4.513e^-4	0.847	DOWNSTREAM CR44590 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10914039	3R_10914039_INS [dm3] 3R_15088317_INS [dm6]	C	CAC	4.515e^-4	0.847	INTRON CG6966
2L	9597137	2L_9597137_SNP [dm3] 2L_9597137_SNP [dm6]	T	C	4.516e^-4	0.847	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	421156	3R_421156_SNP [dm3] 3R_4595434_SNP [dm6]	T	G	4.516e^-4	0.847	DOWNSTREAM CR44317 INTERGENIC
2L	22020566	2L_22020566_SNP [dm3] 2L_22020566_SNP [dm6]	A	G	4.524e^-4	0.847	DOWNSTREAM CR33987 INTRON tio
2R	11529711	2R_11529711_SNP [dm3] 2R_15642206_SNP [dm6]	C	G	4.528e^-4	0.847	INTRON CG42524
3L	10267765	3L_10267765_SNP [dm3] 3L_10274665_SNP [dm6]	A	G	4.530e^-4	0.847	DOWNSTREAM Or67d INTERGENIC
3R	22765581	3R_22765581_INS [dm3] 3R_26939859_INS [dm6]	A	AG	4.534e^-4	0.847	INTRON sda
2L	12225664	2L_12225664_SNP [dm3] 2L_12225664_SNP [dm6]	A	T	4.536e^-4	0.847	INTRON aret
X	15262813	X_15262813_DEL [dm3] X_15368780_DEL [dm6]	GGGG	G	4.559e^-4	0.847	INTRON acj6
3R	21477031	3R_21477031_SNP [dm3] 3R_25651309_SNP [dm6]	A	G	4.559e^-4	0.847	UPSTREAM mir-92b DOWNSTREAM jigr1 INTERGENIC	TF binding site mE1_TFBS_cad
2L	9567386	2L_9567386_SNP [dm3] 2L_9567386_SNP [dm6]	A	C	4.566e^-4	0.847	UPSTREAM jp DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	13806981	2R_13806981_SNP [dm3] 2R_17919476_SNP [dm6]	A	T	4.577e^-4	0.847	INTRON Elk
2R	4481242	2R_4481242_DEL [dm3] 2R_8593737_DEL [dm6]	TA	T	4.592e^-4	0.847	DOWNSTREAM CG43183 & 1 other INTERGENIC
2L	4165484	2L_4165484_SNP [dm3] 2L_4165484_SNP [dm6]	T	G	4.596e^-4	0.847	SYNONYMOUS_CODING Or24a
2R	17078585	2R_17078585_SNP [dm3] 2R_21191080_SNP [dm6]	A	G	4.596e^-4	0.847	NON_SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14343302	2R_14343302_SNP [dm3] 2R_18455797_SNP [dm6]	T	C	4.598e^-4	0.847	DOWNSTREAM CG30116 INTERGENIC
3R	10654083	3R_10654083_SNP [dm3] 3R_14828361_SNP [dm6]	A	C	4.599e^-4	0.847	INTRON btsz
2L	683988	2L_683988_SNP [dm3] 2L_683988_SNP [dm6]	G	T	4.601e^-4	0.847	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	683989	2L_683989_SNP [dm3] 2L_683989_SNP [dm6]	T	A	4.601e^-4	0.847	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5883239	2R_5883239_SNP [dm3] 2R_9995734_SNP [dm6]	T	C	4.603e^-4	0.847	UTR_3_PRIME Pka-R2 DOWNSTREAM Pka-R2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens

By genomic position
Variant impact
Gene name

Head_Width phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results