DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.109e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1180 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	10440941	2L_10440941_SNP [dm3] 2L_10440941_SNP [dm6]	G	C	8.059e^-6	0.95	UTR_3_PRIME CG13142 DOWNSTREAM CG13142 & 1 other
2L	10440942	2L_10440942_SNP [dm3] 2L_10440942_SNP [dm6]	T	A	8.059e^-6	0.95	UTR_3_PRIME CG13142 DOWNSTREAM CG13142 & 1 other
2R	18286639	2R_18286639_SNP [dm3] 2R_22399134_SNP [dm6]	T	A	9.062e^-6	0.95	INTRON babos	TF binding site BDTNP1_TFBS_dl
2R	6945628	2R_6945628_SNP [dm3] 2R_11058123_SNP [dm6]	C	T	1.188e^-5	0.95	INTRON luna
2L	9785984	2L_9785984_SNP [dm3] 2L_9785984_SNP [dm6]	C	A	1.215e^-5	0.95	UPSTREAM IP3K1 INTRON IP3K1
3R	21847503	3R_21847503_SNP [dm3] 3R_26021781_SNP [dm6]	G	A	1.404e^-5	0.95	UPSTREAM E_spl_m3-HLH & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1256888	3L_1256888_SNP [dm3] 3L_1256888_SNP [dm6]	A	G	1.430e^-5	0.95	UTR_5_PRIME CG9134 DOWNSTREAM CG9130 & 1 other
2L	3367500	2L_3367500_SNP [dm3] 2L_3367500_SNP [dm6]	T	C	1.587e^-5	0.95	SYNONYMOUS_CODING CG34394	TF binding site mE1_TFBS_chinmo
3L	446126	3L_446126_SNP [dm3] 3L_446126_SNP [dm6]	A	T	1.642e^-5	0.95	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	13431427	2L_13431427_SNP [dm3] 2L_13431427_SNP [dm6]	T	C	1.770e^-5	0.95	INTRON CG42784
X	9184554	X_9184554_SNP [dm3] X_9290521_SNP [dm6]	C	A	1.856e^-5	0.95	INTRON lz	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	7497351	3L_7497351_SNP [dm3] 3L_7504251_SNP [dm6]	A	G	2.012e^-5	0.95	INTERGENIC
3L	4114182	3L_4114182_SNP [dm3] 3L_4114182_SNP [dm6]	G	A	2.024e^-5	0.95	DOWNSTREAM Chd64 & 1 other INTERGENIC
3L	4114185	3L_4114185_DEL [dm3] 3L_4114185_DEL [dm6]	AC	G	2.024e^-5	0.95	DOWNSTREAM Chd64 & 1 other INTERGENIC
3L	4114210	3L_4114210_SNP [dm3] 3L_4114210_SNP [dm6]	C	T	2.024e^-5	0.95	DOWNSTREAM Chd64 & 1 other INTERGENIC
2L	12530811	2L_12530811_SNP [dm3] 2L_12530811_SNP [dm6]	T	A	2.275e^-5	0.95	INTRON bun	TF binding site BDTNP1_TFBS_dl
2L	12530826	2L_12530826_SNP [dm3] 2L_12530826_SNP [dm6]	A	T	2.275e^-5	0.95	INTRON bun	TF binding site BDTNP1_TFBS_dl
2L	17858734	2L_17858734_SNP [dm3] 2L_17858734_SNP [dm6]	T	C	2.635e^-5	0.95	INTRON CadN2
3L	7491530	3L_7491530_SNP [dm3] 3L_7498430_SNP [dm6]	G	A	2.709e^-5	0.95	SYNONYMOUS_CODING CG8539	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7491536	3L_7491536_SNP [dm3] 3L_7498436_SNP [dm6]	C	G	2.709e^-5	0.95	SYNONYMOUS_CODING CG8539	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7491539	3L_7491539_SNP [dm3] 3L_7498439_SNP [dm6]	A	G	2.709e^-5	0.95	SYNONYMOUS_CODING CG8539	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17589068	2R_17589068_INS [dm3] 2R_21701563_INS [dm6]	A	ATTCG	2.818e^-5	0.95	UTR_5_PRIME HmgD INTRON HmgZ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	10010443	2L_10010443_SNP [dm3] 2L_10010443_SNP [dm6]	A	T	2.825e^-5	0.95	UTR_5_PRIME Trp1 INTRON Trp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7512829	3L_7512829_SNP [dm3] 3L_7519729_SNP [dm6]	A	G	3.115e^-5	0.95	SYNONYMOUS_CODING ltl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20740185	3R_20740185_DEL [dm3] 3R_24914463_DEL [dm6]	GGCATAAG	G	3.219e^-5	0.95	UPSTREAM tRNA:CR31382 DOWNSTREAM CR44267 & 1 other INTRON PIG-S
3L	7497360	3L_7497360_SNP [dm3] 3L_7504260_SNP [dm6]	C	T	3.293e^-5	0.95	INTERGENIC
2R	16400323	2R_16400323_SNP [dm3] 2R_20512818_SNP [dm6]	T	C	3.294e^-5	0.95	SYNONYMOUS_CODING CG13426 DOWNSTREAM CR44649
2R	19586114	2R_19586114_SNP [dm3] 2R_23698591_SNP [dm6]	C	T	3.692e^-5	0.95	UPSTREAM CG30183 DOWNSTREAM CG4091 INTRON mRpL43	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
2L	892206	2L_892206_SNP [dm3] 2L_892206_SNP [dm6]	G	T	3.743e^-5	0.95	INTERGENIC
2L	892215	2L_892215_DEL [dm3] 2L_892215_DEL [dm6]	GT	A	3.743e^-5	0.95	INTERGENIC
3L	7491106	3L_7491106_SNP [dm3] 3L_7498006_SNP [dm6]	C	T	3.755e^-5	0.95	NON_SYNONYMOUS_CODING CG8539
X	4301178	X_4301178_SNP [dm3] X_4407145_SNP [dm6]	T	G	3.809e^-5	0.95	INTRON CR32773
X	4301181	X_4301181_SNP [dm3] X_4407148_SNP [dm6]	A	T	3.809e^-5	0.95	INTRON CR32773
X	4301193	X_4301193_SNP [dm3] X_4407160_SNP [dm6]	C	T	3.809e^-5	0.95	INTRON CR32773
2L	1925285	2L_1925285_SNP [dm3] 2L_1925285_SNP [dm6]	A	T	4.054e^-5	0.95	INTRON CG7337
3L	4793657	3L_4793657_SNP [dm3] 3L_4793657_SNP [dm6]	T	A	4.065e^-5	0.95	INTRON RhoGEF64C
3L	4793680	3L_4793680_INS [dm3] 3L_4793680_INS [dm6]	C	ATTT	4.065e^-5	0.95	INTRON RhoGEF64C
2L	1694160	2L_1694160_INS [dm3] 2L_1694160_INS [dm6]	A	AAGAATA	4.111e^-5	0.95	INTRON chinmo
3L	7497296	3L_7497296_SNP [dm3] 3L_7504196_SNP [dm6]	A	G	4.116e^-5	0.95	INTERGENIC
3L	7491506	3L_7491506_SNP [dm3] 3L_7498406_SNP [dm6]	C	T	4.193e^-5	0.95	SYNONYMOUS_CODING CG8539	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19477291	2R_19477291_SNP [dm3] 2R_23589768_SNP [dm6]	A	G	4.199e^-5	0.95	INTRON apt
2R	7576848	2R_7576848_SNP [dm3] 2R_11689343_SNP [dm6]	G	A	4.343e^-5	0.95	SYNONYMOUS_CODING wal DOWNSTREAM Buffy	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8860874	2L_8860874_SNP [dm3] 2L_8860874_SNP [dm6]	T	A	4.371e^-5	0.95	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14806446	3R_14806446_SNP [dm3] 3R_18980724_SNP [dm6]	C	A	4.410e^-5	0.95	SYNONYMOUS_CODING Smu1 UPSTREAM dnk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
2L	7154113	2L_7154113_DEL [dm3] 2L_7154113_DEL [dm6]	GCAGTGG	G	4.525e^-5	0.95	INTRON Pvf3
2L	21065398	2L_21065398_SNP [dm3] 2L_21065398_SNP [dm6]	T	C	4.579e^-5	0.95	INTRON CG9265
3R	11575068	3R_11575068_SNP [dm3] 3R_15749346_SNP [dm6]	A	C	4.629e^-5	0.95	INTERGENIC
2L	1694161	2L_1694161_INS [dm3] 2L_1694161_INS [dm6]	T	TAT	4.643e^-5	0.95	INTRON chinmo
2L	12729807	2L_12729807_SNP [dm3] 2L_12729807_SNP [dm6]	T	G	5.078e^-5	0.95	INTRON MRP	TF binding site BDTNP1_TFBS_twi
3L	1256920	3L_1256920_SNP [dm3] 3L_1256920_SNP [dm6]	C	T	5.150e^-5	0.95	UTR_5_PRIME CG9134 DOWNSTREAM CG9130 & 1 other
X	13963293	X_13963293_DEL [dm3] X_14069260_DEL [dm6]	TTTA	T	5.207e^-5	0.95	INTERGENIC
3R	5264135	3R_5264135_SNP [dm3] 3R_9438413_SNP [dm6]	G	A	5.229e^-5	0.95	INTRON ps
3R	6867234	3R_6867234_SNP [dm3] 3R_11041512_SNP [dm6]	A	G	5.267e^-5	0.95	INTRON CG34114
2R	9606247	2R_9606247_SNP [dm3] 2R_13718742_SNP [dm6]	A	T	5.336e^-5	0.95	INTRON fas	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9606256	2R_9606256_SNP [dm3] 2R_13718751_SNP [dm6]	T	C	5.336e^-5	0.95	INTRON fas	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	19739407	3R_19739407_DEL [dm3] 3R_23913685_DEL [dm6]	CCTTGAAAGT	C	5.411e^-5	0.95	INTRON sba	TF binding site mE1_TFBS_Kr
3R	19739419	3R_19739419_DEL [dm3] 3R_23913697_DEL [dm6]	ATTATGTCCG	A	5.411e^-5	0.95	INTRON sba	TF binding site mE1_TFBS_Kr
3L	20672604	3L_20672604_SNP [dm3] 3L_20679504_SNP [dm6]	A	T	5.433e^-5	0.95	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	12598096	2L_12598096_DEL [dm3] 2L_12598096_DEL [dm6]	AT	A	5.474e^-5	0.95	INTRON nub
2L	12598099	2L_12598099_SNP [dm3] 2L_12598099_SNP [dm6]	A	G	5.474e^-5	0.95	INTRON nub
3R	3107655	3R_3107655_SNP [dm3] 3R_7281933_SNP [dm6]	C	G	5.521e^-5	0.95	INTRON rn	TF binding site mE1_TFBS_HSA
X	3490811	X_3490811_SNP [dm3] X_3596778_SNP [dm6]	T	A	5.585e^-5	0.95	INTRON AstA-R1
2R	16720923	2R_16720923_SNP [dm3] 2R_20833418_SNP [dm6]	C	G	5.795e^-5	0.95	UPSTREAM sktl INTRON insc & 1 other	TF binding site BDTNP1_TFBS_dl
X	17290461	X_17290461_SNP [dm3] X_17396428_SNP [dm6]	T	C	6.008e^-5	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3349822	3L_3349822_SNP [dm3] 3L_3349822_SNP [dm6]	C	T	6.099e^-5	0.95	UPSTREAM kst INTRON kst	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5025644	2R_5025644_SNP [dm3] 2R_9138139_SNP [dm6]	T	C	6.159e^-5	0.95	UPSTREAM alc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	892234	2L_892234_SNP [dm3] 2L_892234_SNP [dm6]	G	A	6.239e^-5	0.95	INTERGENIC
2R	16113523	2R_16113523_SNP [dm3] 2R_20226018_SNP [dm6]	A	C	6.294e^-5	0.95	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6265675	3L_6265675_SNP [dm3] 3L_6272575_SNP [dm6]	G	A	6.591e^-5	0.95	INTERGENIC
3R	14649727	3R_14649727_SNP [dm3] 3R_18824005_SNP [dm6]	A	C	6.636e^-5	0.95	INTRON CG18208
2L	19413289	2L_19413289_DEL [dm3] 2L_19413289_DEL [dm6]	GC	G	6.812e^-5	0.95	INTRON Pax	TF binding site BDTNP1_TFBS_dl
3R	22073468	3R_22073468_SNP [dm3] 3R_26247746_SNP [dm6]	T	C	6.890e^-5	0.95	INTRON CR42745	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	4625532	X_4625532_SNP [dm3] X_4731499_SNP [dm6]	G	T	7.079e^-5	0.95	INTERGENIC
2L	4154630	2L_4154630_SNP [dm3] 2L_4154630_SNP [dm6]	A	T	7.258e^-5	0.95	INTERGENIC
3R	13667184	3R_13667184_SNP [dm3] 3R_17841462_SNP [dm6]	G	A	7.416e^-5	0.95	INTRON tinc
3R	10893116	3R_10893116_SNP [dm3] 3R_15067394_SNP [dm6]	T	C	7.444e^-5	0.95	INTRON dpr9
3R	10893118	3R_10893118_SNP [dm3] 3R_15067396_SNP [dm6]	T	G	7.444e^-5	0.95	INTRON dpr9
3L	4796915	3L_4796915_SNP [dm3] 3L_4796915_SNP [dm6]	A	G	7.547e^-5	0.95	DOWNSTREAM RhoGEF64C INTERGENIC
3L	4796921	3L_4796921_SNP [dm3] 3L_4796921_SNP [dm6]	A	C	7.547e^-5	0.95	DOWNSTREAM RhoGEF64C INTERGENIC
3L	4796922	3L_4796922_SNP [dm3] 3L_4796922_SNP [dm6]	A	C	7.547e^-5	0.95	DOWNSTREAM RhoGEF64C INTERGENIC
3L	4796959	3L_4796959_SNP [dm3] 3L_4796959_SNP [dm6]	C	T	7.547e^-5	0.95	DOWNSTREAM RhoGEF64C INTERGENIC
3L	4797525	3L_4797525_SNP [dm3] 3L_4797525_SNP [dm6]	C	G	7.547e^-5	0.95	INTERGENIC
3L	4797687	3L_4797687_SNP [dm3] 3L_4797687_SNP [dm6]	T	C	7.547e^-5	0.95	INTERGENIC
2L	20048872	2L_20048872_SNP [dm3] 2L_20048872_SNP [dm6]	C	A	7.625e^-5	0.95	INTRON sNPF
2R	19586104	2R_19586104_SNP [dm3] 2R_23698581_SNP [dm6]	T	C	7.776e^-5	0.95	UPSTREAM CG30183 DOWNSTREAM CG4091 INTRON mRpL43	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
2R	19586106	2R_19586106_SNP [dm3] 2R_23698583_SNP [dm6]	A	G	7.776e^-5	0.95	UPSTREAM CG30183 DOWNSTREAM CG4091 INTRON mRpL43	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
2R	19586108	2R_19586108_SNP [dm3] 2R_23698585_SNP [dm6]	C	G	7.776e^-5	0.95	UPSTREAM CG30183 DOWNSTREAM CG4091 INTRON mRpL43	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
2R	19586134	2R_19586134_SNP [dm3] 2R_23698611_SNP [dm6]	A	G	7.776e^-5	0.95	SYNONYMOUS_CODING mRpL43 UPSTREAM CG30183 DOWNSTREAM CG4091	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
3R	12516739	3R_12516739_SNP [dm3] 3R_16691017_SNP [dm6]	G	A	7.831e^-5	0.95	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4796888	3L_4796888_SNP [dm3] 3L_4796888_SNP [dm6]	A	G	7.878e^-5	0.95	DOWNSTREAM RhoGEF64C INTERGENIC
3L	1385710	3L_1385710_INS [dm3] 3L_1385710_INS [dm6]	G	GGGGGCCTTCGGA...	8.067e^-5	0.95	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	14626469	X_14626469_SNP [dm3] X_14732436_SNP [dm6]	G	A	8.114e^-5	0.95	INTRON NetB
2R	10931134	2R_10931134_SNP [dm3] 2R_15043629_SNP [dm6]	A	G	8.298e^-5	0.95	INTERGENIC
3L	4795474	3L_4795474_SNP [dm3] 3L_4795474_SNP [dm6]	T	G	8.407e^-5	0.95	INTRON RhoGEF64C
2R	18286617	2R_18286617_SNP [dm3] 2R_22399112_SNP [dm6]	C	T	8.468e^-5	0.95	INTRON babos	TF binding site BDTNP1_TFBS_dl
3R	26061063	3R_26061063_SNP [dm3] 3R_30235341_SNP [dm6]	T	C	8.489e^-5	0.95	INTERGENIC
2L	5403276	2L_5403276_SNP [dm3] 2L_5403276_SNP [dm6]	A	G	8.579e^-5	0.95	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	5403463	2L_5403463_SNP [dm3] 2L_5403463_SNP [dm6]	C	T	8.579e^-5	0.95	UPSTREAM H15 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	6717260	2L_6717260_SNP [dm3] 2L_6717260_SNP [dm6]	G	C	8.769e^-5	0.95	UPSTREAM Aatf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
2L	6717268	2L_6717268_SNP [dm3] 2L_6717268_SNP [dm6]	G	A	8.769e^-5	0.95	UPSTREAM Aatf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
X	15724567	X_15724567_SNP [dm3] X_15830534_SNP [dm6]	A	C	8.913e^-5	0.95	SYNONYMOUS_CODING Chc	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	8936200	2R_8936200_SNP [dm3] 2R_13048695_SNP [dm6]	C	T	9.206e^-5	0.95	DOWNSTREAM CG13324 INTERGENIC
3R	12419334	3R_12419334_DEL [dm3] 3R_16593612_DEL [dm6]	GGCCCCGTATCTTG...	G	9.235e^-5	0.95	UPSTREAM CG14892 INTERGENIC
X	13678754	X_13678754_SNP [dm3] X_13784721_SNP [dm6]	T	C	9.251e^-5	0.95	INTRON inaE	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12548343	2L_12548343_SNP [dm3] 2L_12548343_SNP [dm6]	G	A	9.700e^-5	0.95	INTERGENIC
2L	12548349	2L_12548349_SNP [dm3] 2L_12548349_SNP [dm6]	G	A	9.700e^-5	0.95	INTERGENIC
3R	14649739	3R_14649739_SNP [dm3] 3R_18824017_SNP [dm6]	A	C	9.766e^-5	0.95	INTRON CG18208
3L	20291232	3L_20291232_SNP [dm3] 3L_20298132_SNP [dm6]	T	A	9.939e^-5	0.95	NON_SYNONYMOUS_CODING Pex23	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13684891	2R_13684891_SNP [dm3] 2R_17797386_SNP [dm6]	A	G	1.042e^-4	0.95	SYNONYMOUS_CODING Dhit
3L	5634199	3L_5634199_SNP [dm3] 3L_5641099_SNP [dm6]	A	G	1.043e^-4	0.95	UPSTREAM Blimp-1 INTRON Blimp-1
3L	5634208	3L_5634208_SNP [dm3] 3L_5641108_SNP [dm6]	C	A	1.043e^-4	0.95	UPSTREAM Blimp-1 INTRON Blimp-1
X	9677446	X_9677446_SNP [dm3] X_9783413_SNP [dm6]	G	C	1.056e^-4	0.95	INTRON CG32698
X	9677460	X_9677460_SNP [dm3] X_9783427_SNP [dm6]	G	C	1.056e^-4	0.95	INTRON CG32698
3L	7512907	3L_7512907_SNP [dm3] 3L_7519807_SNP [dm6]	G	A	1.057e^-4	0.95	SYNONYMOUS_CODING ltl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1257620	3L_1257620_INS [dm3] 3L_1257620_INS [dm6]	A	AAT	1.064e^-4	0.95	INTRON CG9134
3L	1257736	3L_1257736_SNP [dm3] 3L_1257736_SNP [dm6]	T	C	1.064e^-4	0.95	INTRON CG9134
2L	3231316	2L_3231316_SNP [dm3] 2L_3231316_SNP [dm6]	T	A	1.067e^-4	0.95	INTERGENIC
3L	9646491	3L_9646491_SNP [dm3] 3L_9653391_SNP [dm6]	C	G	1.090e^-4	0.95	INTRON fry & 1 other
3L	3349821	3L_3349821_SNP [dm3] 3L_3349821_SNP [dm6]	G	T	1.103e^-4	0.95	UPSTREAM kst INTRON kst	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9644884	3L_9644884_SNP [dm3] 3L_9651784_SNP [dm6]	G	A	1.112e^-4	0.95	INTRON fry & 1 other
2R	15401044	2R_15401044_SNP [dm3] 2R_19513539_SNP [dm6]	T	G	1.116e^-4	0.95	NON_SYNONYMOUS_CODING Ir56d
X	12227875	X_12227875_SNP [dm3] X_12333842_SNP [dm6]	A	T	1.126e^-4	0.95	UTR_3_PRIME Ten-a
3L	9749143	3L_9749143_SNP [dm3] 3L_9756043_SNP [dm6]	A	G	1.141e^-4	0.95	INTRON CG42268
X	4301180	X_4301180_SNP [dm3] X_4407147_SNP [dm6]	G	A	1.147e^-4	0.95	INTRON CR32773
2L	14762979	2L_14762979_SNP [dm3] 2L_14762979_SNP [dm6]	T	C	1.150e^-4	0.95	NON_SYNONYMOUS_CODING CSN1a DOWNSTREAM CR44858
3L	8287560	3L_8287560_SNP [dm3] 3L_8294460_SNP [dm6]	G	C	1.183e^-4	0.95	INTRON CG7201
3L	8296117	3L_8296117_SNP [dm3] 3L_8303017_SNP [dm6]	C	T	1.183e^-4	0.95	NON_SYNONYMOUS_CODING CG7194 DOWNSTREAM CG13671	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7602798	3L_7602798_SNP [dm3] 3L_7609698_SNP [dm6]	T	C	1.184e^-4	0.95	INTRON CG33275
2R	12419165	2R_12419165_SNP [dm3] 2R_16531660_SNP [dm6]	G	A	1.194e^-4	0.95	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4795513	3L_4795513_SNP [dm3] 3L_4795513_SNP [dm6]	T	C	1.207e^-4	0.95	INTRON RhoGEF64C
3L	4795543	3L_4795543_SNP [dm3] 3L_4795543_SNP [dm6]	A	G	1.207e^-4	0.95	INTRON RhoGEF64C
3L	4795548	3L_4795548_DEL [dm3] 3L_4795548_DEL [dm6]	ACACTAAGGCATAGGCTGTT...	A	1.207e^-4	0.95	INTRON RhoGEF64C
3L	6265687	3L_6265687_SNP [dm3] 3L_6272587_SNP [dm6]	A	G	1.225e^-4	0.95	INTERGENIC
3L	5407742	3L_5407742_SNP [dm3] 3L_5414642_SNP [dm6]	G	C	1.231e^-4	0.95	INTERGENIC
2R	7107191	2R_7107191_SNP [dm3] 2R_11219686_SNP [dm6]	G	A	1.245e^-4	0.95	UTR_5_PRIME Syx6 & 1 other UPSTREAM Syx6 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	935287	X_935287_INS [dm3] X_1041254_INS [dm6]	C	CTCC	1.247e^-4	0.95	CODON_INSERTION su_w[a]_ INTRON su_w[a]_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
2L	20384799	2L_20384799_SNP [dm3] 2L_20384799_SNP [dm6]	T	C	1.269e^-4	0.95	DOWNSTREAM CG10947 INTERGENIC
2R	12398335	2R_12398335_SNP [dm3] 2R_16510830_SNP [dm6]	C	T	1.308e^-4	0.95	INTRON Sema-2a
3R	5212912	3R_5212912_SNP [dm3] 3R_9387190_SNP [dm6]	T	A	1.326e^-4	0.95	INTRON FER	TF binding site mE1_TFBS_HSA
X	17566103	X_17566103_SNP [dm3] X_17672070_SNP [dm6]	A	G	1.347e^-4	0.95	UPSTREAM CG12990 DOWNSTREAM chas INTERGENIC
2R	6096178	2R_6096178_SNP [dm3] 2R_10208673_SNP [dm6]	A	C	1.356e^-4	0.95	INTRON Hr46 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
3R	25984604	3R_25984604_DEL [dm3] 3R_30158882_DEL [dm6]	TT	T	1.374e^-4	0.95	INTRON CG11498
3R	25984634	3R_25984634_SNP [dm3] 3R_30158912_SNP [dm6]	G	A	1.374e^-4	0.95	INTRON CG11498
2L	19575014	2L_19575014_SNP [dm3] 2L_19575014_SNP [dm6]	C	A	1.394e^-4	0.95	INTRON spi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14804353	3R_14804353_SNP [dm3] 3R_18978631_SNP [dm6]	C	T	1.398e^-4	0.95	DOWNSTREAM Smu1 & 1 other INTRON CG12269
2L	11883660	2L_11883660_SNP [dm3] 2L_11883660_SNP [dm6]	A	C	1.404e^-4	0.95	INTRON Pde1c
2L	9906195	2L_9906195_SNP [dm3] 2L_9906195_SNP [dm6]	C	T	1.418e^-4	0.95	UTR_5_PRIME CG13124	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	3443257	2R_3443257_SNP [dm3] 2R_7555752_SNP [dm6]	G	T	1.436e^-4	0.95	INTRON Corin
2R	6945584	2R_6945584_SNP [dm3] 2R_11058079_SNP [dm6]	T	C	1.478e^-4	0.95	INTRON luna
3R	18668750	3R_18668750_SNP [dm3] 3R_22843028_SNP [dm6]	C	T	1.495e^-4	0.95	INTERGENIC
X	920866	X_920866_SNP [dm3] X_1026833_SNP [dm6]	T	A	1.507e^-4	0.95	UTR_5_PRIME CG3021 UPSTREAM CG32814 & 1 other INTRON su_w[a]_	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	17389210	X_17389210_SNP [dm3] X_17495177_SNP [dm6]	G	A	1.537e^-4	0.95	INTRON CG43658
2L	5403364	2L_5403364_SNP [dm3] 2L_5403364_SNP [dm6]	A	T	1.554e^-4	0.95	UPSTREAM H15 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	10873762	3L_10873762_SNP [dm3] 3L_10880662_SNP [dm6]	A	C	1.558e^-4	0.95	DOWNSTREAM CG6409 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	17434908	2L_17434908_SNP [dm3] 2L_17434908_SNP [dm6]	A	C	1.564e^-4	0.95	NON_SYNONYMOUS_CODING CG5043 DOWNSTREAM CG33928
3R	1818904	3R_1818904_SNP [dm3] 3R_5993182_SNP [dm6]	A	G	1.571e^-4	0.95	INTERGENIC
2L	11883718	2L_11883718_SNP [dm3] 2L_11883718_SNP [dm6]	C	T	1.581e^-4	0.95	INTRON Pde1c
2R	18074793	2R_18074793_SNP [dm3] 2R_22187288_SNP [dm6]	C	G	1.581e^-4	0.95	SYNONYMOUS_CODING Vps35	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10302787	3R_10302787_SNP [dm3] 3R_14477065_SNP [dm6]	G	T	1.597e^-4	0.95	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	10302788	3R_10302788_SNP [dm3] 3R_14477066_SNP [dm6]	C	G	1.597e^-4	0.95	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	4795479	3L_4795479_SNP [dm3] 3L_4795479_SNP [dm6]	A	G	1.628e^-4	0.95	INTRON RhoGEF64C
3R	25556845	3R_25556845_SNP [dm3] 3R_29731123_SNP [dm6]	A	G	1.641e^-4	0.95	NON_SYNONYMOUS_CODING Kul UTR_3_PRIME Kul	TF binding site mE1_TFBS_cad
3L	11748386	3L_11748386_SNP [dm3] 3L_11755286_SNP [dm6]	T	C	1.651e^-4	0.95	INTRON CG6024
X	5328646	X_5328646_SNP [dm3] X_5434613_SNP [dm6]	G	C	1.652e^-4	0.95	INTRON CR44471
2L	3222684	2L_3222684_SNP [dm3] 2L_3222684_SNP [dm6]	G	T	1.666e^-4	0.95	INTERGENIC
2L	5825204	2L_5825204_SNP [dm3] 2L_5825204_SNP [dm6]	A	C	1.667e^-4	0.95	UTR_5_PRIME TrissinR
X	4287551	X_4287551_SNP [dm3] X_4393518_SNP [dm6]	C	T	1.688e^-4	0.95	EXON CR32773
X	8054796	X_8054796_SNP [dm3] X_8160763_SNP [dm6]	G	A	1.694e^-4	0.95	SYNONYMOUS_CODING CG15337 DOWNSTREAM CG10761	TF binding site mE1_TFBS_chinmo
X	15541794	X_15541794_SNP [dm3] X_15647761_SNP [dm6]	C	G	1.704e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16399011	3R_16399011_SNP [dm3] 3R_20573289_SNP [dm6]	G	A	1.717e^-4	0.95	DOWNSTREAM CG5191 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11885286	2L_11885286_SNP [dm3] 2L_11885286_SNP [dm6]	C	G	1.730e^-4	0.95	INTRON Pde1c
2L	12521673	2L_12521673_SNP [dm3] 2L_12521673_SNP [dm6]	C	G	1.732e^-4	0.95	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	6686983	3L_6686983_DEL [dm3] 3L_6693883_DEL [dm6]	ACCAGCTAATTGAACA...	A	1.738e^-4	0.95	INTRON SP1173
2L	13432999	2L_13432999_SNP [dm3] 2L_13432999_SNP [dm6]	G	C	1.748e^-4	0.95	INTRON CG42784
2R	5149493	2R_5149493_SNP [dm3] 2R_9261988_SNP [dm6]	C	T	1.752e^-4	0.95	SYNONYMOUS_CODING CG34141 INTRON Pkn	TF binding site mE1_TFBS_cad
2L	18361852	2L_18361852_SNP [dm3] 2L_18361852_SNP [dm6]	C	A	1.788e^-4	0.95	INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11970077	2L_11970077_SNP [dm3] 2L_11970077_SNP [dm6]	T	C	1.788e^-4	0.95	INTRON CR43314	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	21065179	2L_21065179_SNP [dm3] 2L_21065179_SNP [dm6]	A	C	1.811e^-4	0.95	INTRON CG9265
3L	20292346	3L_20292346_INS [dm3] 3L_20299246_INS [dm6]	A	ATTG	1.814e^-4	0.95	UPSTREAM CR43872 & 1 other INTRON Pex23
3L	7491485	3L_7491485_SNP [dm3] 3L_7498385_SNP [dm6]	T	C	1.849e^-4	0.95	SYNONYMOUS_CODING CG8539	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1257194	3L_1257194_SNP [dm3] 3L_1257194_SNP [dm6]	C	T	1.860e^-4	0.95	SYNONYMOUS_CODING CG9134
3L	1257868	3L_1257868_SNP [dm3] 3L_1257868_SNP [dm6]	C	A	1.862e^-4	0.95	INTRON CG9134
3L	1258531	3L_1258531_SNP [dm3] 3L_1258531_SNP [dm6]	C	T	1.862e^-4	0.95	INTRON CG9134
2R	19551099	2R_19551099_SNP [dm3] 2R_23663576_SNP [dm6]	T	A	1.867e^-4	0.95	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	17566258	X_17566258_INS [dm3] X_17672225_INS [dm6]	A	AACAA	1.867e^-4	0.95	UPSTREAM CG12990 DOWNSTREAM chas INTERGENIC
X	17566277	X_17566277_SNP [dm3] X_17672244_SNP [dm6]	T	C	1.867e^-4	0.95	UPSTREAM CG12990 DOWNSTREAM chas INTERGENIC
X	17566278	X_17566278_SNP [dm3] X_17672245_SNP [dm6]	A	C	1.867e^-4	0.95	UPSTREAM CG12990 DOWNSTREAM chas INTERGENIC
X	17566281	X_17566281_SNP [dm3] X_17672248_SNP [dm6]	C	G	1.867e^-4	0.95	UPSTREAM CG12990 DOWNSTREAM chas INTERGENIC
X	17566283	X_17566283_DEL [dm3] X_17672250_DEL [dm6]	CAGTTCACACAG...	A	1.867e^-4	0.95	UPSTREAM CG12990 DOWNSTREAM chas INTERGENIC
X	17566333	X_17566333_SNP [dm3] X_17672300_SNP [dm6]	G	A	1.867e^-4	0.95	UPSTREAM CG12990 DOWNSTREAM chas INTERGENIC
X	17566337	X_17566337_SNP [dm3] X_17672304_SNP [dm6]	C	T	1.867e^-4	0.95	UPSTREAM CG12990 DOWNSTREAM chas INTERGENIC
X	17566341	X_17566341_SNP [dm3] X_17672308_SNP [dm6]	T	C	1.867e^-4	0.95	UPSTREAM CG12990 DOWNSTREAM chas INTERGENIC
X	17566347	X_17566347_INS [dm3] X_17672314_INS [dm6]	A	AATATATGGA	1.867e^-4	0.95	UPSTREAM CG12990 DOWNSTREAM chas INTERGENIC
2R	7473528	2R_7473528_SNP [dm3] 2R_11586023_SNP [dm6]	G	A	1.873e^-4	0.95	SYNONYMOUS_CODING tou
2L	18499321	2L_18499321_SNP [dm3] 2L_18499321_SNP [dm6]	T	C	1.878e^-4	0.95	INTRON kon
2L	18499335	2L_18499335_SNP [dm3] 2L_18499335_SNP [dm6]	G	A	1.878e^-4	0.95	INTRON kon
3L	7512976	3L_7512976_SNP [dm3] 3L_7519876_SNP [dm6]	C	T	1.886e^-4	0.95	SYNONYMOUS_CODING ltl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	16178457	3R_16178457_DEL [dm3] 3R_20352735_DEL [dm6]	AAGTAAATAA	A	1.905e^-4	0.95	INTERGENIC
2L	5401667	2L_5401667_DEL [dm3] 2L_5401667_DEL [dm6]	ACATATCTGA	A	1.908e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5839226	2L_5839226_SNP [dm3] 2L_5839226_SNP [dm6]	G	C	1.913e^-4	0.95	INTRON TrissinR
2L	2682518	2L_2682518_SNP [dm3] 2L_2682518_SNP [dm6]	T	C	1.934e^-4	0.95	INTRON CG31690
2L	1951818	2L_1951818_SNP [dm3] 2L_1951818_SNP [dm6]	A	G	1.935e^-4	0.95	SYNONYMOUS_CODING erm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18564561	2L_18564561_SNP [dm3] 2L_18564561_SNP [dm6]	T	C	1.961e^-4	0.95	INTRON Pde11	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	19118914	2L_19118914_SNP [dm3] 2L_19118914_SNP [dm6]	T	G	1.977e^-4	0.95	INTRON Ddc	regulatory region REDfly_CRMs
3L	13554079	3L_13554079_SNP [dm3] 3L_13560979_SNP [dm6]	G	A	1.980e^-4	0.95	INTRON bru-3
3R	16178481	3R_16178481_SNP [dm3] 3R_20352759_SNP [dm6]	C	T	1.981e^-4	0.95	INTERGENIC
3R	16178498	3R_16178498_SNP [dm3] 3R_20352776_SNP [dm6]	G	T	1.981e^-4	0.95	INTERGENIC
3R	16178510	3R_16178510_SNP [dm3] 3R_20352788_SNP [dm6]	T	C	1.981e^-4	0.95	INTERGENIC
2R	18703675	2R_18703675_SNP [dm3] 2R_22816170_SNP [dm6]	A	G	1.998e^-4	0.95	UPSTREAM CG30271 DOWNSTREAM stl INTERGENIC
2L	9229220	2L_9229220_SNP [dm3] 2L_9229220_SNP [dm6]	A	G	2.001e^-4	0.95	INTRON tai
2L	3273825	2L_3273825_SNP [dm3] 2L_3273825_SNP [dm6]	A	G	2.003e^-4	0.95	INTERGENIC
2L	11429907	2L_11429907_SNP [dm3] 2L_11429907_SNP [dm6]	A	G	2.015e^-4	0.95	INTERGENIC
3R	25809554	3R_25809554_DEL [dm3] 3R_29983832_DEL [dm6]	ATCCAAA	A	2.015e^-4	0.95	UTR_5_PRIME CG7896	TF binding site mE1_TFBS_Trl
2L	14719558	2L_14719558_SNP [dm3] 2L_14719558_SNP [dm6]	T	G	2.017e^-4	0.95	INTERGENIC
2R	3443099	2R_3443099_SNP [dm3] 2R_7555594_SNP [dm6]	G	A	2.018e^-4	0.95	INTRON Corin
2R	3443135	2R_3443135_SNP [dm3] 2R_7555630_SNP [dm6]	G	T	2.018e^-4	0.95	INTRON Corin
2R	3443154	2R_3443154_SNP [dm3] 2R_7555649_SNP [dm6]	A	C	2.018e^-4	0.95	INTRON Corin
2R	3443171	2R_3443171_SNP [dm3] 2R_7555666_SNP [dm6]	G	T	2.018e^-4	0.95	INTRON Corin
2R	3443174	2R_3443174_SNP [dm3] 2R_7555669_SNP [dm6]	T	A	2.018e^-4	0.95	INTRON Corin
2R	3443178	2R_3443178_SNP [dm3] 2R_7555673_SNP [dm6]	C	T	2.018e^-4	0.95	INTRON Corin
2R	3443202	2R_3443202_SNP [dm3] 2R_7555697_SNP [dm6]	T	C	2.018e^-4	0.95	INTRON Corin
2R	3443255	2R_3443255_SNP [dm3] 2R_7555750_SNP [dm6]	A	G	2.018e^-4	0.95	INTRON Corin
2L	16955027	2L_16955027_SNP [dm3] 2L_16955027_SNP [dm6]	A	C	2.023e^-4	0.95	INTERGENIC
3L	6682359	3L_6682359_SNP [dm3] 3L_6689259_SNP [dm6]	T	C	2.029e^-4	0.95	DOWNSTREAM SP1173 INTERGENIC
2L	2756888	2L_2756888_DEL [dm3] 2L_2756888_DEL [dm6]	TGAACATTTGAAAAT...	T	2.075e^-4	0.95	UTR_3_PRIME Bacc DOWNSTREAM Bacc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	21067616	2L_21067616_SNP [dm3] 2L_21067616_SNP [dm6]	C	T	2.116e^-4	0.95	INTRON CG9265
2R	7338336	2R_7338336_SNP [dm3] 2R_11450831_SNP [dm6]	T	C	2.125e^-4	0.95	UTR_3_PRIME qvr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	18074670	2R_18074670_SNP [dm3] 2R_22187165_SNP [dm6]	C	A	2.144e^-4	0.95	SYNONYMOUS_CODING Vps35	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18668707	3R_18668707_SNP [dm3] 3R_22842985_SNP [dm6]	T	C	2.144e^-4	0.95	INTERGENIC
3L	6683369	3L_6683369_SNP [dm3] 3L_6690269_SNP [dm6]	C	T	2.169e^-4	0.95	SYNONYMOUS_CODING SP1173
3L	6683372	3L_6683372_SNP [dm3] 3L_6690272_SNP [dm6]	C	T	2.169e^-4	0.95	SYNONYMOUS_CODING SP1173
2R	9606159	2R_9606159_SNP [dm3] 2R_13718654_SNP [dm6]	A	C	2.171e^-4	0.95	INTRON fas	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9606161	2R_9606161_SNP [dm3] 2R_13718656_SNP [dm6]	A	C	2.171e^-4	0.95	INTRON fas	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	10296254	X_10296254_SNP [dm3] X_10402221_SNP [dm6]	G	A	2.175e^-4	0.95	INTRON flw
2R	9998664	2R_9998664_SNP [dm3] 2R_14111159_SNP [dm6]	C	A	2.176e^-4	0.95	INTRON Prosap
2R	9998675	2R_9998675_SNP [dm3] 2R_14111170_SNP [dm6]	G	C	2.176e^-4	0.95	INTRON Prosap
2R	9998684	2R_9998684_SNP [dm3] 2R_14111179_SNP [dm6]	T	A	2.176e^-4	0.95	INTRON Prosap
2R	9998690	2R_9998690_SNP [dm3] 2R_14111185_SNP [dm6]	C	A	2.176e^-4	0.95	INTRON Prosap
2R	9998693	2R_9998693_SNP [dm3] 2R_14111188_SNP [dm6]	A	T	2.176e^-4	0.95	INTRON Prosap
2R	9998696	2R_9998696_SNP [dm3] 2R_14111191_SNP [dm6]	T	C	2.176e^-4	0.95	INTRON Prosap
2R	9998703	2R_9998703_SNP [dm3] 2R_14111198_SNP [dm6]	T	C	2.176e^-4	0.95	INTRON Prosap
2R	9998708	2R_9998708_SNP [dm3] 2R_14111203_SNP [dm6]	T	C	2.176e^-4	0.95	INTRON Prosap
2L	9560507	2L_9560507_SNP [dm3] 2L_9560507_SNP [dm6]	G	A	2.189e^-4	0.95	UPSTREAM jp INTRON jp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6263841	2L_6263841_SNP [dm3] 2L_6263841_SNP [dm6]	C	G	2.199e^-4	0.95	NON_SYNONYMOUS_CODING CG13983 INTRON Ddr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6683675	3L_6683675_SNP [dm3] 3L_6690575_SNP [dm6]	G	A	2.230e^-4	0.95	SYNONYMOUS_CODING SP1173
3L	6685659	3L_6685659_SNP [dm3] 3L_6692559_SNP [dm6]	T	G	2.230e^-4	0.95	UTR_5_PRIME SP1173
3L	6686471	3L_6686471_SNP [dm3] 3L_6693371_SNP [dm6]	A	G	2.230e^-4	0.95	UPSTREAM SP1173 INTRON SP1173
3R	10115810	3R_10115810_SNP [dm3] 3R_14290088_SNP [dm6]	A	G	2.271e^-4	0.95	UPSTREAM CG12207 INTRON CG12207	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	19118919	2L_19118919_INS [dm3] 2L_19118919_INS [dm6]	A	ACAATA	2.278e^-4	0.95	INTRON Ddc	regulatory region REDfly_CRMs
X	2871205	X_2871205_SNP [dm3] X_2977172_SNP [dm6]	C	T	2.289e^-4	0.95	INTRON kirre
2L	11306890	2L_11306890_SNP [dm3] 2L_11306890_SNP [dm6]	A	G	2.289e^-4	0.95	UPSTREAM CR43721 INTERGENIC	TF binding site mE1_TFBS_cad
2L	13432974	2L_13432974_SNP [dm3] 2L_13432974_SNP [dm6]	G	A	2.289e^-4	0.95	INTRON CG42784
2L	13433013	2L_13433013_SNP [dm3] 2L_13433013_SNP [dm6]	C	T	2.289e^-4	0.95	INTRON CG42784
3L	8284699	3L_8284699_SNP [dm3] 3L_8291599_SNP [dm6]	T	C	2.300e^-4	0.95	SYNONYMOUS_CODING CG7201
X	10832225	X_10832225_SNP [dm3] X_10938192_SNP [dm6]	T	A	2.304e^-4	0.95	INTRON Myo10A
X	17003077	X_17003077_SNP [dm3] X_17109044_SNP [dm6]	A	G	2.308e^-4	0.95	INTRON CG5004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17003096	X_17003096_SNP [dm3] X_17109063_SNP [dm6]	T	C	2.308e^-4	0.95	INTRON CG5004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21651407	2L_21651407_SNP [dm3] 2L_21651407_SNP [dm6]	A	C	2.345e^-4	0.95	INTERGENIC	transposable element FlyBase
3R	13018037	3R_13018037_SNP [dm3] 3R_17192315_SNP [dm6]	T	C	2.409e^-4	0.95	INTRON Mur89F
3R	15002561	3R_15002561_SNP [dm3] 3R_19176839_SNP [dm6]	A	T	2.435e^-4	0.95	UPSTREAM CG14282 INTERGENIC
3R	15002572	3R_15002572_SNP [dm3] 3R_19176850_SNP [dm6]	A	G	2.435e^-4	0.95	UPSTREAM CG14282 INTERGENIC
2L	3210293	2L_3210293_SNP [dm3] 2L_3210293_SNP [dm6]	C	T	2.451e^-4	0.95	UPSTREAM CR45336 INTERGENIC
X	1268847	X_1268847_SNP [dm3] X_1374814_SNP [dm6]	G	A	2.451e^-4	0.95	UTR_3_PRIME ssx UPSTREAM AMPKalpha DOWNSTREAM ssx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	1279150	X_1279150_SNP [dm3] X_1385117_SNP [dm6]	G	C	2.451e^-4	0.95	UPSTREAM CG32813 INTRON CG32813	TF binding site mE1_TFBS_chinmo
2L	9297824	2L_9297824_SNP [dm3] 2L_9297824_SNP [dm6]	G	C	2.487e^-4	0.95	UTR_3_PRIME Ggamma30A
X	5328605	X_5328605_SNP [dm3] X_5434572_SNP [dm6]	A	T	2.497e^-4	0.95	INTRON CR44471
2L	8771274	2L_8771274_SNP [dm3] 2L_8771274_SNP [dm6]	A	C	2.498e^-4	0.95	INTRON CG9465
2L	8771418	2L_8771418_SNP [dm3] 2L_8771418_SNP [dm6]	T	A	2.498e^-4	0.95	SYNONYMOUS_CODING CG9465
2L	8771480	2L_8771480_SNP [dm3] 2L_8771480_SNP [dm6]	G	C	2.498e^-4	0.95	NON_SYNONYMOUS_CODING CG9465
2R	3795201	2R_3795201_SNP [dm3] 2R_7907696_SNP [dm6]	A	G	2.503e^-4	0.95	INTRON CG30377
X	12200000	X_12200000_DEL [dm3] X_12305967_DEL [dm6]	CTGTGC	C	2.520e^-4	0.95	INTRON Ten-a
3L	1257753	3L_1257753_SNP [dm3] 3L_1257753_SNP [dm6]	C	T	2.521e^-4	0.95	INTRON CG9134
2R	15430637	2R_15430637_SNP [dm3] 2R_19543132_SNP [dm6]	A	G	2.523e^-4	0.95	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2L	13431805	2L_13431805_SNP [dm3] 2L_13431805_SNP [dm6]	T	A	2.529e^-4	0.95	INTRON CG42784
2R	12452269	2R_12452269_SNP [dm3] 2R_16564764_SNP [dm6]	G	A	2.533e^-4	0.95	INTRON DAT	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18005198	2R_18005198_SNP [dm3] 2R_22117693_SNP [dm6]	C	T	2.534e^-4	0.95	INTRON Vrp1
3R	5212954	3R_5212954_SNP [dm3] 3R_9387232_SNP [dm6]	T	G	2.537e^-4	0.95	INTRON FER	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14768094	2L_14768094_SNP [dm3] 2L_14768094_SNP [dm6]	T	A	2.543e^-4	0.95	DOWNSTREAM CG4701 INTERGENIC
X	917738	X_917738_DEL [dm3] X_1023705_DEL [dm6]	CC	C	2.562e^-4	0.95	INTRON su_w[a]_ & 2 others
3L	4793550	3L_4793550_DEL [dm3] 3L_4793550_DEL [dm6]	CACTTAAAG	C	2.569e^-4	0.95	INTRON RhoGEF64C
3L	4955985	3L_4955985_SNP [dm3] 3L_4955985_SNP [dm6]	G	C	2.594e^-4	0.95	SYNONYMOUS_CODING Con	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4955991	3L_4955991_SNP [dm3] 3L_4955991_SNP [dm6]	A	G	2.594e^-4	0.95	SYNONYMOUS_CODING Con	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	1269878	X_1269878_SNP [dm3] X_1375845_SNP [dm6]	T	C	2.605e^-4	0.95	UTR_5_PRIME AMPKalpha DOWNSTREAM ssx INTRON AMPKalpha	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7566798	2R_7566798_SNP [dm3] 2R_11679293_SNP [dm6]	T	A	2.610e^-4	0.95	UTR_5_PRIME Roc2 UPSTREAM Buffy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18702645	2R_18702645_SNP [dm3] 2R_22815140_SNP [dm6]	C	T	2.621e^-4	0.95	SYNONYMOUS_CODING stl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	5885930	3L_5885930_SNP [dm3] 3L_5892830_SNP [dm6]	G	C	2.634e^-4	0.95	INTERGENIC
2L	9229294	2L_9229294_SNP [dm3] 2L_9229294_SNP [dm6]	G	A	2.696e^-4	0.95	INTRON tai
2L	9447929	2L_9447929_SNP [dm3] 2L_9447929_SNP [dm6]	G	A	2.709e^-4	0.95	INTRON numb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2L	5820385	2L_5820385_SNP [dm3] 2L_5820385_SNP [dm6]	A	T	2.712e^-4	0.95	INTERGENIC
3R	11583929	3R_11583929_SNP [dm3] 3R_15758207_SNP [dm6]	T	C	2.713e^-4	0.95	INTERGENIC
2R	6945587	2R_6945587_SNP [dm3] 2R_11058082_SNP [dm6]	T	G	2.713e^-4	0.95	INTRON luna
2L	17863000	2L_17863000_SNP [dm3] 2L_17863000_SNP [dm6]	C	G	2.744e^-4	0.95	INTRON CadN2
3L	3620539	3L_3620539_SNP [dm3] 3L_3620539_SNP [dm6]	C	T	2.762e^-4	0.95	SYNONYMOUS_CODING CG14974	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16410596	2R_16410596_DEL [dm3] 2R_20523091_DEL [dm6]	ATGGAGTGATGTCTGAGCCA...	A	2.797e^-4	0.95	INTERGENIC
2L	3222284	2L_3222284_SNP [dm3] 2L_3222284_SNP [dm6]	A	G	2.800e^-4	0.95	INTERGENIC
2L	3222290	2L_3222290_DEL [dm3] 2L_3222290_DEL [dm6]	AAT	G	2.800e^-4	0.95	INTERGENIC
2L	3222310	2L_3222310_SNP [dm3] 2L_3222310_SNP [dm6]	G	T	2.800e^-4	0.95	INTERGENIC
3R	21359317	3R_21359317_SNP [dm3] 3R_25533595_SNP [dm6]	A	C	2.803e^-4	0.95	INTRON msi
3R	21359350	3R_21359350_SNP [dm3] 3R_25533628_SNP [dm6]	C	T	2.803e^-4	0.95	INTRON msi
3L	15331672	3L_15331672_SNP [dm3] 3L_15338572_SNP [dm6]	C	T	2.807e^-4	0.95	SYNONYMOUS_CODING Toll-6	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	17659636	3R_17659636_SNP [dm3] 3R_21833914_SNP [dm6]	C	T	2.808e^-4	0.95	SYNONYMOUS_CODING Gr93a	TF binding site BDTNP1_TFBS_twi
2R	3878924	2R_3878924_SNP [dm3] 2R_7991419_SNP [dm6]	G	A	2.815e^-4	0.95	DOWNSTREAM CR44272 & 1 other INTRON ACC
3R	22759226	3R_22759226_SNP [dm3] 3R_26933504_SNP [dm6]	G	C	2.852e^-4	0.95	INTRON sda
2R	12452243	2R_12452243_SNP [dm3] 2R_16564738_SNP [dm6]	A	C	2.874e^-4	0.95	INTRON DAT	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	7083273	3R_7083273_SNP [dm3] 3R_11257551_SNP [dm6]	G	A	2.882e^-4	0.95	INTERGENIC
3R	16178259	3R_16178259_SNP [dm3] 3R_20352537_SNP [dm6]	T	C	2.898e^-4	0.95	INTERGENIC
2L	15854774	2L_15854774_SNP [dm3] 2L_15854774_SNP [dm6]	A	G	2.908e^-4	0.95	DOWNSTREAM CG13243 INTRON Tektin-A
2L	14305101	2L_14305101_SNP [dm3] 2L_14305101_SNP [dm6]	T	C	2.923e^-4	0.95	INTRON wb	TF binding site mE1_TFBS_eve
3L	3055895	3L_3055895_SNP [dm3] 3L_3055895_SNP [dm6]	A	C	2.941e^-4	0.95	DOWNSTREAM CG1271 & 2 others INTERGENIC
3R	19843214	3R_19843214_SNP [dm3] 3R_24017492_SNP [dm6]	C	T	2.944e^-4	0.95	INTRON KrT95D
2R	15580257	2R_15580257_SNP [dm3] 2R_19692752_SNP [dm6]	A	T	2.951e^-4	0.95	EXON CR44506	TF binding site mE1_TFBS_HSA
X	920356	X_920356_DEL [dm3] X_1026323_DEL [dm6]	AA	A	2.958e^-4	0.95	UPSTREAM CG3021 INTRON su_w[a]_ & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17594905	2R_17594905_SNP [dm3] 2R_21707400_SNP [dm6]	T	A	3.023e^-4	0.95	INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13468940	2L_13468940_SNP [dm3] 2L_13468940_SNP [dm6]	G	A	3.025e^-4	0.95	INTRON CG42784
2R	5874388	2R_5874388_SNP [dm3] 2R_9986883_SNP [dm6]	T	A	3.029e^-4	0.95	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Kr
2L	16801686	2L_16801686_INS [dm3] 2L_16801686_INS [dm6]	C	CGCC	3.035e^-4	0.95	DOWNSTREAM CG13280 & 1 other INTERGENIC
2R	17594897	2R_17594897_SNP [dm3] 2R_21707392_SNP [dm6]	C	T	3.040e^-4	0.95	INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	18567977	2L_18567977_SNP [dm3] 2L_18567977_SNP [dm6]	G	A	3.052e^-4	0.95	INTRON Pde11
3L	5407802	3L_5407802_SNP [dm3] 3L_5414702_SNP [dm6]	A	G	3.061e^-4	0.95	INTERGENIC
3L	1257625	3L_1257625_SNP [dm3] 3L_1257625_SNP [dm6]	G	C	3.062e^-4	0.95	INTRON CG9134
2L	20313242	2L_20313242_SNP [dm3] 2L_20313242_SNP [dm6]	C	T	3.066e^-4	0.95	INTRON spir
2L	9403049	2L_9403049_SNP [dm3] 2L_9403049_SNP [dm6]	T	G	3.076e^-4	0.95	INTRON Shawl
2L	9403054	2L_9403054_SNP [dm3] 2L_9403054_SNP [dm6]	G	A	3.076e^-4	0.95	INTRON Shawl
X	19762364	X_19762364_SNP [dm3] X_19868331_SNP [dm6]	T	C	3.106e^-4	0.95	INTRON Hers
2R	3494660	2R_3494660_SNP [dm3] 2R_7607155_SNP [dm6]	C	T	3.107e^-4	0.95	INTRON CG1358	TF binding site BDTNP1_TFBS_twi
2R	14223590	2R_14223590_DEL [dm3] 2R_18336085_DEL [dm6]	TT	T	3.121e^-4	0.95	INTRON sbb	TF binding site BDTNP1_TFBS_z
2L	15386965	2L_15386965_SNP [dm3] 2L_15386965_SNP [dm6]	C	T	3.125e^-4	0.95	INTERGENIC
2R	6093846	2R_6093846_SNP [dm3] 2R_10206341_SNP [dm6]	G	A	3.137e^-4	0.95	UTR_3_PRIME Hr46 & 1 other
3R	10255986	3R_10255986_SNP [dm3] 3R_14430264_SNP [dm6]	C	T	3.140e^-4	0.95	INTRON cv-c
2L	22671850	2L_22671850_SNP [dm3] 2L_22779118_SNP [dm6]	C	G	3.141e^-4	0.95	INTERGENIC
X	17566182	X_17566182_SNP [dm3] X_17672149_SNP [dm6]	A	T	3.146e^-4	0.95	UPSTREAM CG12990 DOWNSTREAM chas INTERGENIC
2L	18463864	2L_18463864_SNP [dm3] 2L_18463864_SNP [dm6]	T	A	3.155e^-4	0.95	INTRON let-7-C
3R	27154933	3R_27154933_SNP [dm3] 3R_31329211_SNP [dm6]	A	G	3.156e^-4	0.95	INTRON CG34347	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3213834	X_3213834_SNP [dm3] X_3319801_SNP [dm6]	G	A	3.194e^-4	0.95	INTRON dnc & 1 other
3R	27013355	3R_27013355_SNP [dm3] 3R_31187633_SNP [dm6]	C	T	3.198e^-4	0.95	INTRON mesh
2L	20384841	2L_20384841_SNP [dm3] 2L_20384841_SNP [dm6]	C	A	3.222e^-4	0.95	DOWNSTREAM CG10947 INTERGENIC
X	15541730	X_15541730_SNP [dm3] X_15647697_SNP [dm6]	G	T	3.225e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA
2L	11929709	2L_11929709_SNP [dm3] 2L_11929709_SNP [dm6]	A	G	3.226e^-4	0.95	INTERGENIC
2R	18180166	2R_18180166_SNP [dm3] 2R_22292661_SNP [dm6]	C	T	3.244e^-4	0.95	UPSTREAM CG5819 DOWNSTREAM CR43422 INTERGENIC
3L	8444834	3L_8444834_SNP [dm3] 3L_8451734_SNP [dm6]	A	C	3.248e^-4	0.95	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve
3L	10246991	3L_10246991_SNP [dm3] 3L_10253891_SNP [dm6]	C	T	3.250e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10246992	3L_10246992_INS [dm3] 3L_10253892_INS [dm6]	A	AA	3.250e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10246996	3L_10246996_SNP [dm3] 3L_10253896_SNP [dm6]	T	A	3.250e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10246998	3L_10246998_SNP [dm3] 3L_10253898_SNP [dm6]	G	A	3.250e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10246999	3L_10246999_SNP [dm3] 3L_10253899_SNP [dm6]	C	A	3.250e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10247000	3L_10247000_INS [dm3] 3L_10253900_INS [dm6]	T	TAAA	3.250e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	1821529	3R_1821529_SNP [dm3] 3R_5995807_SNP [dm6]	G	T	3.261e^-4	0.95	EXON CR44928
3R	1821530	3R_1821530_SNP [dm3] 3R_5995808_SNP [dm6]	T	C	3.261e^-4	0.95	EXON CR44928
2L	19435843	2L_19435843_SNP [dm3] 2L_19435843_SNP [dm6]	C	T	3.273e^-4	0.95	DOWNSTREAM CG10237 & 1 other INTERGENIC
X	19660724	X_19660724_SNP [dm3] X_19766691_SNP [dm6]	T	C	3.273e^-4	0.95	UTR_3_PRIME vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19660917	X_19660917_SNP [dm3] X_19766884_SNP [dm6]	G	A	3.273e^-4	0.95	UTR_3_PRIME vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	18933967	2R_18933967_SNP [dm3] 2R_23046444_SNP [dm6]	A	G	3.297e^-4	0.95	UTR_5_PRIME twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
X	18452730	X_18452730_SNP [dm3] X_18558697_SNP [dm6]	A	G	3.303e^-4	0.95	INTRON Bx
2R	7297250	2R_7297250_SNP [dm3] 2R_11409745_SNP [dm6]	G	A	3.306e^-4	0.95	UPSTREAM CG30026 DOWNSTREAM CG34054 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9236508	2L_9236508_INS [dm3] 2L_9236508_INS [dm6]	A	AA	3.340e^-4	0.95	DOWNSTREAM tRNA:CR31885 INTRON tai
3L	8287865	3L_8287865_SNP [dm3] 3L_8294765_SNP [dm6]	C	G	3.362e^-4	0.95	INTRON CG7201
X	6530751	X_6530751_SNP [dm3] X_6636718_SNP [dm6]	C	T	3.368e^-4	0.95	UPSTREAM CR44817 DOWNSTREAM CG14443 INTRON pigs
2L	1192809	2L_1192809_SNP [dm3] 2L_1192809_SNP [dm6]	C	T	3.374e^-4	0.95	INTRON CG5001	TF binding site mE1_TFBS_cad
2L	5611351	2L_5611351_SNP [dm3] 2L_5611351_SNP [dm6]	C	G	3.381e^-4	0.95	INTRON CG14010
2R	6631821	2R_6631821_SNP [dm3] 2R_10744316_SNP [dm6]	T	C	3.400e^-4	0.95	INTRON CG33144
2R	11384876	2R_11384876_SNP [dm3] 2R_15497371_SNP [dm6]	A	G	3.413e^-4	0.95	UPSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	5822442	2L_5822442_SNP [dm3] 2L_5822442_SNP [dm6]	G	A	3.416e^-4	0.95	INTERGENIC
3L	6899089	3L_6899089_SNP [dm3] 3L_6905989_SNP [dm6]	A	G	3.434e^-4	0.95	INTERGENIC
X	3361491	X_3361491_SNP [dm3] X_3467458_SNP [dm6]	C	T	3.438e^-4	0.95	INTRON CR44999 & 1 other
2L	3372569	2L_3372569_SNP [dm3] 2L_3372569_SNP [dm6]	G	A	3.444e^-4	0.95	DOWNSTREAM CG15412 INTRON CG34394	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
3L	5054749	3L_5054749_SNP [dm3] 3L_5054749_SNP [dm6]	G	A	3.445e^-4	0.95	INTRON Con
2L	2880480	2L_2880480_SNP [dm3] 2L_2880480_SNP [dm6]	A	T	3.463e^-4	0.95	UTR_3_PRIME betaggt-II DOWNSTREAM NTPase	TF binding site mE1_TFBS_chinmo
3R	26547509	3R_26547509_SNP [dm3] 3R_30721787_SNP [dm6]	A	G	3.468e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8800913	2L_8800913_SNP [dm3] 2L_8800913_SNP [dm6]	T	C	3.468e^-4	0.95	INTERGENIC
3L	13080189	3L_13080189_SNP [dm3] 3L_13087089_SNP [dm6]	A	C	3.469e^-4	0.95	UPSTREAM CR45749 INTRON CG17300
3L	13080190	3L_13080190_SNP [dm3] 3L_13087090_SNP [dm6]	A	G	3.469e^-4	0.95	UPSTREAM CR45749 INTRON CG17300
3L	13080227	3L_13080227_SNP [dm3] 3L_13087127_SNP [dm6]	A	T	3.469e^-4	0.95	UPSTREAM CR45749 INTRON CG17300
2L	8800952	2L_8800952_DEL [dm3] 2L_8800952_DEL [dm6]	TT	T	3.472e^-4	0.95	INTERGENIC
2R	9830824	2R_9830824_SNP [dm3] 2R_13943319_SNP [dm6]	C	A	3.476e^-4	0.95	NON_SYNONYMOUS_CODING DJ-1alpha DOWNSTREAM AGO1
3L	8038940	3L_8038940_DEL [dm3] 3L_8045840_DEL [dm6]	TGAATGCGAT	T	3.476e^-4	0.95	INTRON nmo
2R	9606158	2R_9606158_SNP [dm3] 2R_13718653_SNP [dm6]	T	G	3.490e^-4	0.95	INTRON fas	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4062489	3L_4062489_SNP [dm3] 3L_4062489_SNP [dm6]	A	G	3.491e^-4	0.95	SYNONYMOUS_CODING dib DOWNSTREAM CG18869	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	9184273	X_9184273_SNP [dm3] X_9290240_SNP [dm6]	C	A	3.511e^-4	0.95	INTRON lz	TF binding site mE1_TFBS_Kr
X	9184279	X_9184279_SNP [dm3] X_9290246_SNP [dm6]	C	T	3.511e^-4	0.95	INTRON lz	TF binding site mE1_TFBS_Kr
X	9184281	X_9184281_SNP [dm3] X_9290248_SNP [dm6]	C	T	3.511e^-4	0.95	INTRON lz	TF binding site mE1_TFBS_Kr
X	9184283	X_9184283_SNP [dm3] X_9290250_SNP [dm6]	C	A	3.511e^-4	0.95	INTRON lz	TF binding site mE1_TFBS_Kr
X	9184156	X_9184156_SNP [dm3] X_9290123_SNP [dm6]	G	T	3.514e^-4	0.95	INTRON lz	TF binding site mE1_TFBS_Kr
3R	27154938	3R_27154938_SNP [dm3] 3R_31329216_SNP [dm6]	C	T	3.518e^-4	0.95	INTRON CG34347	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14512611	3L_14512611_SNP [dm3] 3L_14519511_SNP [dm6]	T	G	3.519e^-4	0.95	DOWNSTREAM CG4613 INTRON bbg
3L	10487534	3L_10487534_SNP [dm3] 3L_10494434_SNP [dm6]	C	A	3.526e^-4	0.95	INTRON A2bp1
3L	10487644	3L_10487644_SNP [dm3] 3L_10494544_SNP [dm6]	G	A	3.526e^-4	0.95	INTRON A2bp1
2L	3231335	2L_3231335_SNP [dm3] 2L_3231335_SNP [dm6]	T	C	3.527e^-4	0.95	INTERGENIC
2L	3231385	2L_3231385_INS [dm3] 2L_3231385_INS [dm6]	C	CC	3.527e^-4	0.95	INTERGENIC
2L	6006572	2L_6006572_SNP [dm3] 2L_6006572_SNP [dm6]	G	A	3.538e^-4	0.95	NON_SYNONYMOUS_CODING Gal DOWNSTREAM CR43866 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	3782058	X_3782058_SNP [dm3] X_3888025_SNP [dm6]	T	C	3.553e^-4	0.95	INTRON CG15239
2R	12868010	2R_12868010_SNP [dm3] 2R_16980505_SNP [dm6]	C	A	3.563e^-4	0.95	INTRON Cbp53E
2R	12868036	2R_12868036_DEL [dm3] 2R_16980531_DEL [dm6]	CGT	C	3.563e^-4	0.95	INTRON Cbp53E
2R	11838300	2R_11838300_SNP [dm3] 2R_15950795_SNP [dm6]	C	A	3.566e^-4	0.95	UTR_5_PRIME Strn-Mlck DOWNSTREAM Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_HSA
2R	11838301	2R_11838301_SNP [dm3] 2R_15950796_SNP [dm6]	A	C	3.566e^-4	0.95	UTR_5_PRIME Strn-Mlck DOWNSTREAM Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_HSA
2R	7115057	2R_7115057_DEL [dm3] 2R_11227552_DEL [dm6]	AA	A	3.571e^-4	0.95	DOWNSTREAM CG7737 INTRON metro	TF binding site mE1_TFBS_cad
3L	1257553	3L_1257553_DEL [dm3] 3L_1257553_DEL [dm6]	GG	G	3.574e^-4	0.95	INTRON CG9134
3L	1257560	3L_1257560_SNP [dm3] 3L_1257560_SNP [dm6]	C	A	3.574e^-4	0.95	INTRON CG9134
3L	1257622	3L_1257622_SNP [dm3] 3L_1257622_SNP [dm6]	G	T	3.574e^-4	0.95	INTRON CG9134
3L	1257627	3L_1257627_INS [dm3] 3L_1257627_INS [dm6]	T	TTAATTAA	3.574e^-4	0.95	INTRON CG9134
3L	1257629	3L_1257629_INS [dm3] 3L_1257629_INS [dm6]	T	TCTGATGAAAAATGCAA...	3.574e^-4	0.95	INTRON CG9134
3L	1257671	3L_1257671_SNP [dm3] 3L_1257671_SNP [dm6]	C	T	3.574e^-4	0.95	INTRON CG9134
3L	1258115	3L_1258115_SNP [dm3] 3L_1258115_SNP [dm6]	A	G	3.574e^-4	0.95	INTRON CG9134
3L	1258317	3L_1258317_SNP [dm3] 3L_1258317_SNP [dm6]	G	A	3.574e^-4	0.95	INTRON CG9134
3L	1258365	3L_1258365_INS [dm3] 3L_1258365_INS [dm6]	A	AA	3.574e^-4	0.95	INTRON CG9134
3L	1258391	3L_1258391_SNP [dm3] 3L_1258391_SNP [dm6]	A	C	3.574e^-4	0.95	INTRON CG9134
3L	8636936	3L_8636936_SNP [dm3] 3L_8643836_SNP [dm6]	T	C	3.584e^-4	0.95	DOWNSTREAM Cpr66D INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6682328	3L_6682328_SNP [dm3] 3L_6689228_SNP [dm6]	A	T	3.614e^-4	0.95	DOWNSTREAM SP1173 INTERGENIC
3L	18620916	3L_18620916_SNP [dm3] 3L_18627816_SNP [dm6]	T	G	3.627e^-4	0.95	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	18634888	3R_18634888_SNP [dm3] 3R_22809166_SNP [dm6]	T	A	3.643e^-4	0.95	INTERGENIC
3R	3224736	3R_3224736_SNP [dm3] 3R_7399014_SNP [dm6]	A	G	3.665e^-4	0.95	INTERGENIC
2L	2756713	2L_2756713_SNP [dm3] 2L_2756713_SNP [dm6]	C	T	3.666e^-4	0.95	UTR_3_PRIME Bacc DOWNSTREAM Bacc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	2756859	2L_2756859_SNP [dm3] 2L_2756859_SNP [dm6]	A	G	3.666e^-4	0.95	UTR_3_PRIME Bacc DOWNSTREAM Bacc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	11395110	2L_11395110_INS [dm3] 2L_11395110_INS [dm6]	T	TC	3.666e^-4	0.95	INTERGENIC	regulatory region REDfly_CRMs
2L	11395126	2L_11395126_SNP [dm3] 2L_11395126_SNP [dm6]	T	C	3.666e^-4	0.95	INTERGENIC	regulatory region REDfly_CRMs
2L	11395246	2L_11395246_INS [dm3] 2L_11395246_INS [dm6]	A	AGTTA	3.666e^-4	0.95	INTERGENIC	regulatory region REDfly_CRMs
2L	11395300	2L_11395300_SNP [dm3] 2L_11395300_SNP [dm6]	T	A	3.666e^-4	0.95	INTERGENIC	regulatory region REDfly_CRMs
2L	11853734	2L_11853734_SNP [dm3] 2L_11853734_SNP [dm6]	C	A	3.666e^-4	0.95	UTR_3_PRIME CG42751 DOWNSTREAM Mal-B2 INTRON Pde1c
2L	5815098	2L_5815098_SNP [dm3] 2L_5815098_SNP [dm6]	T	A	3.666e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_inv
2L	5815159	2L_5815159_SNP [dm3] 2L_5815159_SNP [dm6]	C	T	3.666e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_inv
2L	5815245	2L_5815245_SNP [dm3] 2L_5815245_SNP [dm6]	G	A	3.666e^-4	0.95	INTERGENIC
2L	5815395	2L_5815395_SNP [dm3] 2L_5815395_SNP [dm6]	G	C	3.666e^-4	0.95	INTERGENIC
2L	5815416	2L_5815416_SNP [dm3] 2L_5815416_SNP [dm6]	C	G	3.666e^-4	0.95	INTERGENIC
2L	5815450	2L_5815450_SNP [dm3] 2L_5815450_SNP [dm6]	C	A	3.666e^-4	0.95	INTERGENIC
2L	5815459	2L_5815459_SNP [dm3] 2L_5815459_SNP [dm6]	T	C	3.666e^-4	0.95	INTERGENIC
2L	5815755	2L_5815755_SNP [dm3] 2L_5815755_SNP [dm6]	T	C	3.666e^-4	0.95	INTERGENIC
2L	5816415	2L_5816415_SNP [dm3] 2L_5816415_SNP [dm6]	A	C	3.666e^-4	0.95	INTERGENIC
2L	5816502	2L_5816502_SNP [dm3] 2L_5816502_SNP [dm6]	G	A	3.666e^-4	0.95	INTERGENIC
2L	5817152	2L_5817152_DEL [dm3] 2L_5817152_DEL [dm6]	GA	G	3.666e^-4	0.95	DOWNSTREAM CG31644 INTERGENIC
2L	5820910	2L_5820910_SNP [dm3] 2L_5820910_SNP [dm6]	A	T	3.666e^-4	0.95	INTERGENIC
3L	12031067	3L_12031067_DEL [dm3] 3L_12037967_DEL [dm6]	AC	A	3.666e^-4	0.95	INTRON rols
3L	1304994	3L_1304994_SNP [dm3] 3L_1304994_SNP [dm6]	A	G	3.666e^-4	0.95	UTR_3_PRIME CG2277 DOWNSTREAM CG2277 & 1 other
3L	1305455	3L_1305455_SNP [dm3] 3L_1305455_SNP [dm6]	G	C	3.666e^-4	0.95	UTR_3_PRIME CG2277 DOWNSTREAM CG9149
3L	1305457	3L_1305457_SNP [dm3] 3L_1305457_SNP [dm6]	G	A	3.666e^-4	0.95	UTR_3_PRIME CG2277 DOWNSTREAM CG9149
3L	4118899	3L_4118899_SNP [dm3] 3L_4118899_SNP [dm6]	C	T	3.666e^-4	0.95	INTRON Chd64
3L	4118941	3L_4118941_SNP [dm3] 3L_4118941_SNP [dm6]	G	A	3.666e^-4	0.95	INTRON Chd64
3L	9244212	3L_9244212_SNP [dm3] 3L_9251112_SNP [dm6]	T	C	3.666e^-4	0.95	SYNONYMOUS_CODING CG4477 UPSTREAM GluRIB	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10852738	X_10852738_SNP [dm3] X_10958705_SNP [dm6]	T	C	3.666e^-4	0.95	INTRON Myo10A
X	12923115	X_12923115_SNP [dm3] X_13029082_SNP [dm6]	A	C	3.666e^-4	0.95	INTRON rad
X	14502415	X_14502415_SNP [dm3] X_14608382_SNP [dm6]	A	G	3.666e^-4	0.95	INTRON NetA
X	17147406	X_17147406_SNP [dm3] X_17253373_SNP [dm6]	A	G	3.666e^-4	0.95	INTRON f	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17148102	X_17148102_SNP [dm3] X_17254069_SNP [dm6]	C	T	3.666e^-4	0.95	INTRON f
X	17148119	X_17148119_SNP [dm3] X_17254086_SNP [dm6]	C	A	3.666e^-4	0.95	INTRON f
X	17149560	X_17149560_SNP [dm3] X_17255527_SNP [dm6]	A	T	3.666e^-4	0.95	INTRON f
3L	10292532	3L_10292532_DEL [dm3] 3L_10299432_DEL [dm6]	GCTGCGCTTG	G	3.685e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
3L	7097309	3L_7097309_SNP [dm3] 3L_7104209_SNP [dm6]	C	G	3.697e^-4	0.95	INTRON form3
X	13789400	X_13789400_SNP [dm3] X_13895367_SNP [dm6]	T	A	3.713e^-4	0.95	INTRON mamo
2R	18232768	2R_18232768_SNP [dm3] 2R_22345263_SNP [dm6]	A	T	3.716e^-4	0.95	NON_SYNONYMOUS_CODING Liprin-gamma UTR_5_PRIME Liprin-gamma	TF binding site mE1_TFBS_chinmo
2L	9229184	2L_9229184_SNP [dm3] 2L_9229184_SNP [dm6]	A	C	3.725e^-4	0.95	INTRON tai
3R	20301728	3R_20301728_SNP [dm3] 3R_24476006_SNP [dm6]	C	G	3.750e^-4	0.95	INTERGENIC
3R	20301729	3R_20301729_SNP [dm3] 3R_24476007_SNP [dm6]	G	C	3.750e^-4	0.95	INTERGENIC
2R	5025589	2R_5025589_SNP [dm3] 2R_9138084_SNP [dm6]	T	C	3.757e^-4	0.95	UPSTREAM alc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	5025608	2R_5025608_SNP [dm3] 2R_9138103_SNP [dm6]	T	A	3.757e^-4	0.95	UPSTREAM alc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9448048	2L_9448048_SNP [dm3] 2L_9448048_SNP [dm6]	T	C	3.767e^-4	0.95	INTRON numb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
2R	9998625	2R_9998625_SNP [dm3] 2R_14111120_SNP [dm6]	A	G	3.768e^-4	0.95	INTRON Prosap
2R	6945885	2R_6945885_SNP [dm3] 2R_11058380_SNP [dm6]	A	G	3.782e^-4	0.95	INTRON luna
X	9421752	X_9421752_SNP [dm3] X_9527719_SNP [dm6]	G	A	3.800e^-4	0.95	INTRON CG32700
X	9421757	X_9421757_SNP [dm3] X_9527724_SNP [dm6]	A	G	3.800e^-4	0.95	INTRON CG32700
2R	19475351	2R_19475351_SNP [dm3] 2R_23587828_SNP [dm6]	G	T	3.806e^-4	0.95	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3079619	3L_3079619_SNP [dm3] 3L_3079619_SNP [dm6]	T	C	3.829e^-4	0.95	INTRON CG11486
3L	3079634	3L_3079634_SNP [dm3] 3L_3079634_SNP [dm6]	C	G	3.829e^-4	0.95	INTRON CG11486
2L	3284868	2L_3284868_SNP [dm3] 2L_3284868_SNP [dm6]	G	T	3.834e^-4	0.95	INTERGENIC
2R	3879741	2R_3879741_SNP [dm3] 2R_7992236_SNP [dm6]	C	T	3.842e^-4	0.95	UPSTREAM ACC DOWNSTREAM Nup44A EXON CR44272
2R	3879764	2R_3879764_SNP [dm3] 2R_7992259_SNP [dm6]	C	A	3.842e^-4	0.95	UPSTREAM ACC DOWNSTREAM Nup44A EXON CR44272
3R	3209525	3R_3209525_SNP [dm3] 3R_7383803_SNP [dm6]	A	T	3.843e^-4	0.95	INTERGENIC
2L	9448000	2L_9448000_SNP [dm3] 2L_9448000_SNP [dm6]	C	G	3.855e^-4	0.95	INTRON numb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
2R	9998692	2R_9998692_SNP [dm3] 2R_14111187_SNP [dm6]	C	T	3.863e^-4	0.95	INTRON Prosap
2R	5104902	2R_5104902_SNP [dm3] 2R_9217397_SNP [dm6]	C	T	3.866e^-4	0.95	INTERGENIC
3L	22921834	3L_22921834_SNP [dm3] 3L_22928734_SNP [dm6]	C	T	3.889e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	8458179	3L_8458179_SNP [dm3] 3L_8465079_SNP [dm6]	A	G	3.899e^-4	0.95	SYNONYMOUS_CODING Gug	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2R	12398317	2R_12398317_SNP [dm3] 2R_16510812_SNP [dm6]	A	G	3.920e^-4	0.95	INTRON Sema-2a
2R	3584958	2R_3584958_SNP [dm3] 2R_7697453_SNP [dm6]	T	C	3.921e^-4	0.95	INTRON CG1399
2L	13706454	2L_13706454_SNP [dm3] 2L_13706454_SNP [dm6]	A	G	3.928e^-4	0.95	INTRON CG31814
X	19254118	X_19254118_SNP [dm3] X_19360085_SNP [dm6]	A	T	3.928e^-4	0.95	INTRON kek5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11442850	2L_11442850_SNP [dm3] 2L_11442850_SNP [dm6]	G	C	3.932e^-4	0.95	INTRON salm
2L	12521600	2L_12521600_SNP [dm3] 2L_12521600_SNP [dm6]	C	T	3.935e^-4	0.95	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	8998907	2L_8998907_SNP [dm3] 2L_8998907_SNP [dm6]	G	A	3.944e^-4	0.95	SYNONYMOUS_CODING Try29F DOWNSTREAM CG18661	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	12687136	2L_12687136_SNP [dm3] 2L_12687136_SNP [dm6]	G	T	3.958e^-4	0.95	DOWNSTREAM pdm2 INTERGENIC
2R	12550743	2R_12550743_SNP [dm3] 2R_16663238_SNP [dm6]	T	A	3.977e^-4	0.95	INTRON Picot
2R	19594342	2R_19594342_SNP [dm3] 2R_23706819_SNP [dm6]	A	T	3.983e^-4	0.95	UPSTREAM l_2_tid INTRON l_2_not	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12324752	X_12324752_SNP [dm3] X_12430719_SNP [dm6]	G	C	4.010e^-4	0.95	INTERGENIC
X	3542070	X_3542070_SNP [dm3] X_3648037_SNP [dm6]	C	T	4.012e^-4	0.95	INTRON AstA-R1
3R	15739504	3R_15739504_SNP [dm3] 3R_19913782_SNP [dm6]	G	T	4.019e^-4	0.95	UTR_3_PRIME RhoGAP92B DOWNSTREAM CG42508 & 2 others	TF binding site mE1_TFBS_kn
3R	15739523	3R_15739523_SNP [dm3] 3R_19913801_SNP [dm6]	A	T	4.019e^-4	0.95	UTR_3_PRIME RhoGAP92B DOWNSTREAM CG42508 & 2 others
2L	5403038	2L_5403038_SNP [dm3] 2L_5403038_SNP [dm6]	T	A	4.020e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	6496394	2L_6496394_SNP [dm3] 2L_6496394_SNP [dm6]	A	T	4.024e^-4	0.95	UTR_3_PRIME CG31638 UPSTREAM CG9550
2R	18943695	2R_18943695_INS [dm3] 2R_23056172_INS [dm6]	A	AC	4.034e^-4	0.95	INTRON CG44252
2L	9229144	2L_9229144_SNP [dm3] 2L_9229144_SNP [dm6]	C	A	4.045e^-4	0.95	INTRON tai
2L	9229157	2L_9229157_SNP [dm3] 2L_9229157_SNP [dm6]	A	G	4.045e^-4	0.95	INTRON tai
2L	9229158	2L_9229158_SNP [dm3] 2L_9229158_SNP [dm6]	A	T	4.045e^-4	0.95	INTRON tai
2L	9229160	2L_9229160_SNP [dm3] 2L_9229160_SNP [dm6]	A	T	4.045e^-4	0.95	INTRON tai
2L	9229164	2L_9229164_SNP [dm3] 2L_9229164_SNP [dm6]	A	C	4.045e^-4	0.95	INTRON tai
2L	9229168	2L_9229168_SNP [dm3] 2L_9229168_SNP [dm6]	A	G	4.045e^-4	0.95	INTRON tai
2R	12239554	2R_12239554_SNP [dm3] 2R_16352049_SNP [dm6]	A	T	4.055e^-4	0.95	INTERGENIC
X	887865	X_887865_SNP [dm3] X_993832_SNP [dm6]	T	G	4.057e^-4	0.95	INTERGENIC
3L	15272367	3L_15272367_SNP [dm3] 3L_15279267_SNP [dm6]	T	C	4.074e^-4	0.95	INTERGENIC
X	18030269	X_18030269_DEL [dm3] X_18136236_DEL [dm6]	CAAATCGCAGCGCTAACGA...	C	4.082e^-4	0.95	INTRON ari-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7097312	3L_7097312_SNP [dm3] 3L_7104212_SNP [dm6]	T	A	4.106e^-4	0.95	INTRON form3
3R	25521477	3R_25521477_SNP [dm3] 3R_29695755_SNP [dm6]	T	C	4.118e^-4	0.95	SYNONYMOUS_CODING dmrt99B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5897398	3L_5897398_SNP [dm3] 3L_5904298_SNP [dm6]	T	C	4.119e^-4	0.95	UTR_3_PRIME CG10486 UPSTREAM CG32413
3L	10220424	3L_10220424_SNP [dm3] 3L_10227324_SNP [dm6]	T	C	4.128e^-4	0.95	INTERGENIC
3L	10220428	3L_10220428_DEL [dm3] 3L_10227328_DEL [dm6]	TT	T	4.128e^-4	0.95	INTERGENIC
3L	12623000	3L_12623000_SNP [dm3] 3L_12629900_SNP [dm6]	T	C	4.134e^-4	0.95	INTRON CR32111
3L	20329879	3L_20329879_SNP [dm3] 3L_20336779_SNP [dm6]	A	G	4.150e^-4	0.95	INTERGENIC	transposable element FlyBase
3L	16172148	3L_16172148_SNP [dm3] 3L_16179048_SNP [dm6]	A	G	4.158e^-4	0.95	INTERGENIC
3L	20296914	3L_20296914_DEL [dm3] 3L_20303814_DEL [dm6]	AAA	C	4.158e^-4	0.95	DOWNSTREAM CG32225 INTRON CG6597	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	9184335	X_9184335_SNP [dm3] X_9290302_SNP [dm6]	C	A	4.169e^-4	0.95	INTRON lz	TF binding site mE1_TFBS_Kr
2L	14486886	2L_14486886_SNP [dm3] 2L_14486886_SNP [dm6]	G	T	4.184e^-4	0.95	DOWNSTREAM CR44731 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	14486976	2L_14486976_SNP [dm3] 2L_14486976_SNP [dm6]	T	C	4.184e^-4	0.95	DOWNSTREAM CR44731 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20732259	3R_20732259_SNP [dm3] 3R_24906537_SNP [dm6]	A	G	4.206e^-4	0.95	UPSTREAM CG13643 INTERGENIC	TF binding site mE1_TFBS_cad
3L	1256558	3L_1256558_SNP [dm3] 3L_1256558_SNP [dm6]	A	G	4.221e^-4	0.95	UTR_5_PRIME CG9134 DOWNSTREAM CG9130 & 1 other
X	4780135	X_4780135_SNP [dm3] X_4886102_SNP [dm6]	A	G	4.225e^-4	0.95	INTRON CG42594
2R	7328406	2R_7328406_DEL [dm3] 2R_11440901_DEL [dm6]	TTTAGTAGAAAT...	T	4.255e^-4	0.95	INTRON CG7777
3L	8287864	3L_8287864_SNP [dm3] 3L_8294764_SNP [dm6]	G	A	4.258e^-4	0.95	INTRON CG7201
3R	26889427	3R_26889427_SNP [dm3] 3R_31063705_SNP [dm6]	C	A	4.298e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_cad
2L	5401637	2L_5401637_SNP [dm3] 2L_5401637_SNP [dm6]	A	G	4.314e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	13093838	3L_13093838_SNP [dm3] 3L_13100738_SNP [dm6]	A	G	4.319e^-4	0.95	DOWNSTREAM CR44554 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2682780	2L_2682780_SNP [dm3] 2L_2682780_SNP [dm6]	G	T	4.330e^-4	0.95	INTRON CG31690
2L	9229152	2L_9229152_SNP [dm3] 2L_9229152_SNP [dm6]	T	C	4.335e^-4	0.95	INTRON tai
3R	22034522	3R_22034522_SNP [dm3] 3R_26208800_SNP [dm6]	G	A	4.336e^-4	0.95	INTRON CR44320
2R	15159254	2R_15159254_SNP [dm3] 2R_19271749_SNP [dm6]	A	C	4.341e^-4	0.95	INTRON rib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3L	8285539	3L_8285539_SNP [dm3] 3L_8292439_SNP [dm6]	T	G	4.353e^-4	0.95	INTRON CG7201	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	337554	3R_337554_SNP [dm3] 3R_4511832_SNP [dm6]	C	T	4.356e^-4	0.95	INTRON CG34357	transposable element FlyBase
X	9530198	X_9530198_SNP [dm3] X_9636165_SNP [dm6]	T	A	4.366e^-4	0.95	INTRON l_1_G0232
2L	9403063	2L_9403063_SNP [dm3] 2L_9403063_SNP [dm6]	C	T	4.366e^-4	0.95	INTRON Shawl
2L	9403096	2L_9403096_SNP [dm3] 2L_9403096_SNP [dm6]	T	A	4.366e^-4	0.95	INTRON Shawl
3L	2356485	3L_2356485_SNP [dm3] 3L_2356485_SNP [dm6]	T	C	4.382e^-4	0.95	INTERGENIC
X	16159023	X_16159023_SNP [dm3] X_16264990_SNP [dm6]	A	G	4.384e^-4	0.95	DOWNSTREAM CG12507 INTERGENIC
2L	6855824	2L_6855824_SNP [dm3] 2L_6855824_SNP [dm6]	G	A	4.389e^-4	0.95	INTRON l_2_k09022
2L	8796030	2L_8796030_SNP [dm3] 2L_8796030_SNP [dm6]	C	A	4.415e^-4	0.95	INTERGENIC
3L	3079602	3L_3079602_SNP [dm3] 3L_3079602_SNP [dm6]	G	A	4.423e^-4	0.95	INTRON CG11486
3L	9244471	3L_9244471_SNP [dm3] 3L_9251371_SNP [dm6]	T	C	4.435e^-4	0.95	UPSTREAM GluRIB DOWNSTREAM CG4477 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5509408	2L_5509408_SNP [dm3] 2L_5509408_SNP [dm6]	A	T	4.450e^-4	0.95	INTERGENIC
3R	3207897	3R_3207897_SNP [dm3] 3R_7382175_SNP [dm6]	G	A	4.465e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_inv
3L	5407734	3L_5407734_SNP [dm3] 3L_5414634_SNP [dm6]	T	C	4.467e^-4	0.95	INTERGENIC
2R	8559815	2R_8559815_SNP [dm3] 2R_12672310_SNP [dm6]	G	A	4.488e^-4	0.95	SYNONYMOUS_CODING CG42708	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7497179	3L_7497179_DEL [dm3] 3L_7504079_DEL [dm6]	TT	T	4.490e^-4	0.95	INTERGENIC
3L	7497188	3L_7497188_DEL [dm3] 3L_7504088_DEL [dm6]	CCTA	C	4.490e^-4	0.95	INTERGENIC
3L	7497193	3L_7497193_SNP [dm3] 3L_7504093_SNP [dm6]	C	A	4.490e^-4	0.95	INTERGENIC
3L	7497194	3L_7497194_SNP [dm3] 3L_7504094_SNP [dm6]	T	A	4.490e^-4	0.95	INTERGENIC
3L	20316881	3L_20316881_SNP [dm3] 3L_20323781_SNP [dm6]	G	A	4.503e^-4	0.95	UPSTREAM CG6434 INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
2L	8763126	2L_8763126_SNP [dm3] 2L_8763126_SNP [dm6]	G	A	4.573e^-4	0.95	INTERGENIC
3L	18145995	3L_18145995_SNP [dm3] 3L_18152895_SNP [dm6]	G	T	4.575e^-4	0.95	INTRON CG7330
X	17566280	X_17566280_SNP [dm3] X_17672247_SNP [dm6]	A	C	4.582e^-4	0.95	UPSTREAM CG12990 DOWNSTREAM chas INTERGENIC
X	18527796	X_18527796_SNP [dm3] X_18633763_SNP [dm6]	G	T	4.590e^-4	0.95	INTRON wgn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19003098	2R_19003098_SNP [dm3] 2R_23115575_SNP [dm6]	G	T	4.596e^-4	0.95	INTERGENIC
X	5455332	X_5455332_SNP [dm3] X_5561299_SNP [dm6]	A	G	4.596e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	1258475	3L_1258475_SNP [dm3] 3L_1258475_SNP [dm6]	A	T	4.599e^-4	0.95	INTRON CG9134
2L	3947252	2L_3947252_SNP [dm3] 2L_3947252_SNP [dm6]	G	T	4.634e^-4	0.95	INTRON fred
3R	26065680	3R_26065680_SNP [dm3] 3R_30239958_SNP [dm6]	A	G	4.635e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	12419357	3R_12419357_SNP [dm3] 3R_16593635_SNP [dm6]	A	C	4.655e^-4	0.95	UPSTREAM CG14892 INTERGENIC
2L	14754156	2L_14754156_SNP [dm3] 2L_14754156_SNP [dm6]	C	T	4.666e^-4	0.95	INTERGENIC
2L	1450814	2L_1450814_INS [dm3] 2L_1450814_INS [dm6]	A	AAAGA	4.709e^-4	0.95	INTERGENIC
2L	1450822	2L_1450822_SNP [dm3] 2L_1450822_SNP [dm6]	C	G	4.709e^-4	0.95	INTERGENIC
2L	1450824	2L_1450824_SNP [dm3] 2L_1450824_SNP [dm6]	G	A	4.709e^-4	0.95	INTERGENIC
2L	1450831	2L_1450831_SNP [dm3] 2L_1450831_SNP [dm6]	T	C	4.709e^-4	0.95	INTERGENIC
2R	7077964	2R_7077964_SNP [dm3] 2R_11190459_SNP [dm6]	C	A	4.712e^-4	0.95	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	8939118	2R_8939118_SNP [dm3] 2R_13051613_SNP [dm6]	T	G	4.717e^-4	0.95	INTERGENIC
2R	8939153	2R_8939153_SNP [dm3] 2R_13051648_SNP [dm6]	G	T	4.717e^-4	0.95	INTERGENIC
2L	14763616	2L_14763616_SNP [dm3] 2L_14763616_SNP [dm6]	C	T	4.722e^-4	0.95	SYNONYMOUS_CODING CSN1a DOWNSTREAM CR44858
2L	9028967	2L_9028967_SNP [dm3] 2L_9028967_SNP [dm6]	A	G	4.722e^-4	0.95	INTRON CG9582 & 1 other
3L	4956723	3L_4956723_SNP [dm3] 3L_4956723_SNP [dm6]	T	C	4.722e^-4	0.95	SYNONYMOUS_CODING Con
3L	9244441	3L_9244441_SNP [dm3] 3L_9251341_SNP [dm6]	G	A	4.722e^-4	0.95	UPSTREAM GluRIB DOWNSTREAM CG4477 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13431772	2L_13431772_SNP [dm3] 2L_13431772_SNP [dm6]	A	T	4.725e^-4	0.95	INTRON CG42784
2L	8661142	2L_8661142_SNP [dm3] 2L_8661142_SNP [dm6]	G	A	4.734e^-4	0.95	SPLICE_SITE_REGION Sema-1a INTRON Sema-1a
2L	8800572	2L_8800572_SNP [dm3] 2L_8800572_SNP [dm6]	C	T	4.743e^-4	0.95	INTERGENIC
3L	20269766	3L_20269766_SNP [dm3] 3L_20276666_SNP [dm6]	G	C	4.745e^-4	0.95	INTRON gogo
2R	6093863	2R_6093863_SNP [dm3] 2R_10206358_SNP [dm6]	G	A	4.750e^-4	0.95	UTR_3_PRIME Hr46 & 1 other
3R	18596421	3R_18596421_SNP [dm3] 3R_22770699_SNP [dm6]	A	G	4.759e^-4	0.95	NON_SYNONYMOUS_CODING CG43094 UPSTREAM CG43093 DOWNSTREAM CG43095 INTRON Usp12-46 & 1 other
X	921769	X_921769_SNP [dm3] X_1027736_SNP [dm6]	T	C	4.761e^-4	0.95	SYNONYMOUS_CODING CG3021 DOWNSTREAM CDC45L INTRON su_w[a]_	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
3L	11547644	3L_11547644_SNP [dm3] 3L_11554544_SNP [dm6]	C	A	4.774e^-4	0.95	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	19806819	2L_19806819_SNP [dm3] 2L_19806819_SNP [dm6]	G	C	4.791e^-4	0.95	INTRON sick
X	13215975	X_13215975_SNP [dm3] X_13321942_SNP [dm6]	C	A	4.795e^-4	0.95	INTRON IP3K2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18225839	X_18225839_SNP [dm3] X_18331806_SNP [dm6]	C	A	4.801e^-4	0.95	INTRON CG6123
2L	19118125	2L_19118125_SNP [dm3] 2L_19118125_SNP [dm6]	G	A	4.822e^-4	0.95	SYNONYMOUS_CODING Ddc	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6014323	2L_6014323_SNP [dm3] 2L_6014323_SNP [dm6]	G	A	4.853e^-4	0.95	INTRON H2.0
X	3217080	X_3217080_SNP [dm3] X_3323047_SNP [dm6]	A	G	4.854e^-4	0.95	INTRON CR44886 & 1 other
X	3988772	X_3988772_SNP [dm3] X_4094739_SNP [dm6]	G	C	4.867e^-4	0.95	INTERGENIC
2L	16463311	2L_16463311_SNP [dm3] 2L_16463311_SNP [dm6]	G	C	4.883e^-4	0.95	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16463332	2L_16463332_SNP [dm3] 2L_16463332_SNP [dm6]	A	G	4.883e^-4	0.95	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15264165	2R_15264165_INS [dm3] 2R_19376660_INS [dm6]	G	GGAATCATTCCCCGTGAAG...	4.898e^-4	0.95	UPSTREAM CG10062 INTRON CG10062
2R	15264167	2R_15264167_SNP [dm3] 2R_19376662_SNP [dm6]	G	C	4.898e^-4	0.95	UPSTREAM CG10062 INTRON CG10062
2L	20041555	2L_20041555_SNP [dm3] 2L_20041555_SNP [dm6]	T	A	4.907e^-4	0.95	INTRON sNPF
2L	1730568	2L_1730568_SNP [dm3] 2L_1730568_SNP [dm6]	T	C	4.924e^-4	0.95	SYNONYMOUS_CODING CG31937 UPSTREAM Eno DOWNSTREAM Rrp40 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14429134	2R_14429134_SNP [dm3] 2R_18541629_SNP [dm6]	G	A	4.928e^-4	0.95	INTRON Rgk2
3L	6893980	3L_6893980_SNP [dm3] 3L_6900880_SNP [dm6]	A	G	4.933e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	16869850	3R_16869850_SNP [dm3] 3R_21044128_SNP [dm6]	G	A	4.933e^-4	0.95	SYNONYMOUS_CODING CG12278 DOWNSTREAM CG31189	TF binding site BDTNP1_TFBS_sna
3L	4795040	3L_4795040_SNP [dm3] 3L_4795040_SNP [dm6]	C	T	4.936e^-4	0.95	INTRON RhoGEF64C
X	8297337	X_8297337_SNP [dm3] X_8403304_SNP [dm6]	G	A	4.949e^-4	0.95	UTR_3_PRIME CG10555	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8048303	3L_8048303_SNP [dm3] 3L_8055203_SNP [dm6]	T	C	4.953e^-4	0.95	SYNONYMOUS_CODING bip1
2R	10813652	2R_10813652_SNP [dm3] 2R_14926147_SNP [dm6]	A	G	5.000e^-4	0.95	INTRON CG10249	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	8430534	X_8430534_SNP [dm3] X_8536501_SNP [dm6]	C	A	5.010e^-4	0.95	INTRON Nrg
2R	14417783	2R_14417783_SNP [dm3] 2R_18530278_SNP [dm6]	G	A	5.017e^-4	0.95	INTRON CG10924	TF binding site BDTNP1_TFBS_twi
3L	3349836	3L_3349836_SNP [dm3] 3L_3349836_SNP [dm6]	C	A	5.033e^-4	0.95	UPSTREAM kst INTRON kst	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	3214056	3R_3214056_INS [dm3] 3R_7388334_INS [dm6]	T	TTGTCCTTTATTACATGGCA...	5.039e^-4	0.95	DOWNSTREAM CR45560 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	15144788	3R_15144788_SNP [dm3] 3R_19319066_SNP [dm6]	A	G	5.087e^-4	0.95	INTRON Dl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9565030	2L_9565030_SNP [dm3] 2L_9565030_SNP [dm6]	A	G	5.094e^-4	0.95	UTR_5_PRIME jp INTRON jp
3L	7506426	3L_7506426_SNP [dm3] 3L_7513326_SNP [dm6]	C	T	5.107e^-4	0.95	NON_SYNONYMOUS_CODING CG7546	TF binding site mE1_TFBS_cad
3L	7499993	3L_7499993_SNP [dm3] 3L_7506893_SNP [dm6]	A	G	5.116e^-4	0.95	UPSTREAM CG7548 INTERGENIC	TF binding site mE1_TFBS_cad
3L	7500019	3L_7500019_SNP [dm3] 3L_7506919_SNP [dm6]	C	A	5.116e^-4	0.95	UPSTREAM CG7548 INTERGENIC	TF binding site mE1_TFBS_cad
3L	7500022	3L_7500022_SNP [dm3] 3L_7506922_SNP [dm6]	C	G	5.116e^-4	0.95	UPSTREAM CG7548 INTERGENIC	TF binding site mE1_TFBS_cad
3L	7501907	3L_7501907_SNP [dm3] 3L_7508807_SNP [dm6]	A	T	5.116e^-4	0.95	INTERGENIC
3L	7502251	3L_7502251_SNP [dm3] 3L_7509151_SNP [dm6]	A	G	5.116e^-4	0.95	INTERGENIC
3L	7503677	3L_7503677_SNP [dm3] 3L_7510577_SNP [dm6]	T	C	5.116e^-4	0.95	UPSTREAM CG7546 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	7505429	3L_7505429_SNP [dm3] 3L_7512329_SNP [dm6]	A	T	5.116e^-4	0.95	SYNONYMOUS_CODING CG7546	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	13790427	X_13790427_SNP [dm3] X_13896394_SNP [dm6]	G	T	5.127e^-4	0.95	INTRON mamo
X	19663305	X_19663305_SNP [dm3] X_19769272_SNP [dm6]	A	T	5.128e^-4	0.95	UTR_3_PRIME vfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	11883141	2L_11883141_SNP [dm3] 2L_11883141_SNP [dm6]	C	T	5.137e^-4	0.95	INTRON Pde1c
3R	23510024	3R_23510024_SNP [dm3] 3R_27684302_SNP [dm6]	C	T	5.139e^-4	0.95	INTERGENIC
3R	23510030	3R_23510030_SNP [dm3] 3R_27684308_SNP [dm6]	T	G	5.139e^-4	0.95	INTERGENIC
2R	5148896	2R_5148896_SNP [dm3] 2R_9261391_SNP [dm6]	T	C	5.139e^-4	0.95	SYNONYMOUS_CODING CG34141 INTRON Pkn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8287755	3L_8287755_SNP [dm3] 3L_8294655_SNP [dm6]	A	C	5.155e^-4	0.95	INTRON CG7201
2L	8762996	2L_8762996_SNP [dm3] 2L_8762996_SNP [dm6]	T	C	5.158e^-4	0.95	INTERGENIC
3L	7097350	3L_7097350_SNP [dm3] 3L_7104250_SNP [dm6]	A	T	5.158e^-4	0.95	INTRON form3
3L	7097367	3L_7097367_SNP [dm3] 3L_7104267_SNP [dm6]	G	A	5.158e^-4	0.95	INTRON form3
2L	2453060	2L_2453060_SNP [dm3] 2L_2453060_SNP [dm6]	A	G	5.168e^-4	0.95	INTRON dpp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	12419323	3R_12419323_SNP [dm3] 3R_16593601_SNP [dm6]	C	T	5.172e^-4	0.95	UPSTREAM CG14892 INTERGENIC
3R	12419326	3R_12419326_SNP [dm3] 3R_16593604_SNP [dm6]	A	T	5.172e^-4	0.95	UPSTREAM CG14892 INTERGENIC
3R	12419329	3R_12419329_SNP [dm3] 3R_16593607_SNP [dm6]	C	T	5.172e^-4	0.95	UPSTREAM CG14892 INTERGENIC
3R	12419366	3R_12419366_SNP [dm3] 3R_16593644_SNP [dm6]	A	T	5.172e^-4	0.95	UPSTREAM CG14892 INTERGENIC
3R	19639076	3R_19639076_SNP [dm3] 3R_23813354_SNP [dm6]	G	A	5.216e^-4	0.95	SYNONYMOUS_CODING eIF4G2 INTRON CG34355 & 1 other
3R	18634889	3R_18634889_SNP [dm3] 3R_22809167_SNP [dm6]	C	A	5.223e^-4	0.95	INTERGENIC
3R	6844216	3R_6844216_SNP [dm3] 3R_11018494_SNP [dm6]	C	A	5.248e^-4	0.95	INTRON CG34114
3R	19711004	3R_19711004_SNP [dm3] 3R_23885282_SNP [dm6]	A	C	5.264e^-4	0.95	INTRON Pli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_GATAe
3L	6682923	3L_6682923_DEL [dm3] 3L_6689823_DEL [dm6]	GG	G	5.266e^-4	0.95	UTR_3_PRIME SP1173
3R	25677770	3R_25677770_SNP [dm3] 3R_29852048_SNP [dm6]	C	T	5.275e^-4	0.95	SYNONYMOUS_CODING Cad99C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5401665	2L_5401665_SNP [dm3] 2L_5401665_SNP [dm6]	A	G	5.278e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9229187	2L_9229187_SNP [dm3] 2L_9229187_SNP [dm6]	T	A	5.283e^-4	0.95	INTRON tai
X	8516261	X_8516261_SNP [dm3] X_8622228_SNP [dm6]	A	T	5.293e^-4	0.95	INTERGENIC
2L	13441287	2L_13441287_SNP [dm3] 2L_13441287_SNP [dm6]	C	T	5.296e^-4	0.95	INTRON CG42784 EXON CR45683
X	17148232	X_17148232_SNP [dm3] X_17254199_SNP [dm6]	T	C	5.331e^-4	0.95	INTRON f
2L	6717411	2L_6717411_INS [dm3] 2L_6717411_INS [dm6]	T	TGAAGTTTT	5.335e^-4	0.95	UPSTREAM Aatf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA
2L	6717420	2L_6717420_SNP [dm3] 2L_6717420_SNP [dm6]	C	T	5.335e^-4	0.95	UPSTREAM Aatf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA
2L	6717438	2L_6717438_SNP [dm3] 2L_6717438_SNP [dm6]	A	C	5.335e^-4	0.95	UPSTREAM Aatf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA
2L	6717451	2L_6717451_SNP [dm3] 2L_6717451_SNP [dm6]	T	A	5.335e^-4	0.95	UPSTREAM Aatf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA
2L	6717469	2L_6717469_SNP [dm3] 2L_6717469_SNP [dm6]	G	A	5.335e^-4	0.95	UPSTREAM Aatf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA
2L	6717484	2L_6717484_SNP [dm3] 2L_6717484_SNP [dm6]	A	G	5.335e^-4	0.95	UPSTREAM Aatf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA
2L	6717559	2L_6717559_SNP [dm3] 2L_6717559_SNP [dm6]	C	T	5.335e^-4	0.95	UPSTREAM Aatf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	5054771	3L_5054771_SNP [dm3] 3L_5054771_SNP [dm6]	G	T	5.336e^-4	0.95	INTRON Con
3L	5055324	3L_5055324_SNP [dm3] 3L_5055324_SNP [dm6]	T	A	5.336e^-4	0.95	INTRON Con
2L	4619392	2L_4619392_INS [dm3] 2L_4619392_INS [dm6]	A	ATTGTA	5.346e^-4	0.95	UPSTREAM CR44609 INTERGENIC
2L	5462768	2L_5462768_SNP [dm3] 2L_5462768_SNP [dm6]	A	G	5.351e^-4	0.95	INTRON mid
2L	5509295	2L_5509295_SNP [dm3] 2L_5509295_SNP [dm6]	T	A	5.385e^-4	0.95	INTERGENIC
2L	5509301	2L_5509301_SNP [dm3] 2L_5509301_SNP [dm6]	C	T	5.385e^-4	0.95	INTERGENIC
2L	5509314	2L_5509314_SNP [dm3] 2L_5509314_SNP [dm6]	T	C	5.385e^-4	0.95	INTERGENIC
3L	9829384	3L_9829384_SNP [dm3] 3L_9836284_SNP [dm6]	G	A	5.411e^-4	0.95	SYNONYMOUS_CODING I-2 DOWNSTREAM Cdk8 INTRON I-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	9421720	X_9421720_SNP [dm3] X_9527687_SNP [dm6]	G	A	5.413e^-4	0.95	INTRON CG32700
3L	7499560	3L_7499560_SNP [dm3] 3L_7506460_SNP [dm6]	A	G	5.429e^-4	0.95	UPSTREAM CG7548 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8261617	3L_8261617_SNP [dm3] 3L_8268517_SNP [dm6]	T	C	5.432e^-4	0.95	INTRON Dscam4
X	12320021	X_12320021_SNP [dm3] X_12425988_SNP [dm6]	A	C	5.441e^-4	0.95	INTERGENIC
2L	21112099	2L_21112099_SNP [dm3] 2L_21112099_SNP [dm6]	A	G	5.474e^-4	0.95	INTRON Nhe2
X	15024050	X_15024050_SNP [dm3] X_15130017_SNP [dm6]	C	T	5.480e^-4	0.95	INTRON drd
2R	18933970	2R_18933970_SNP [dm3] 2R_23046447_SNP [dm6]	G	A	5.482e^-4	0.95	UTR_5_PRIME twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	25556783	3R_25556783_SNP [dm3] 3R_29731061_SNP [dm6]	A	G	5.515e^-4	0.95	SYNONYMOUS_CODING Kul UTR_3_PRIME Kul	TF binding site mE1_TFBS_cad
2R	5025985	2R_5025985_SNP [dm3] 2R_9138480_SNP [dm6]	G	A	5.516e^-4	0.95	UPSTREAM CG8788 & 2 others INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	1450817	2L_1450817_SNP [dm3] 2L_1450817_SNP [dm6]	A	T	5.519e^-4	0.95	INTERGENIC
3L	4982024	3L_4982024_SNP [dm3] 3L_4982024_SNP [dm6]	T	A	5.525e^-4	0.95	DOWNSTREAM CR45685 INTRON Con	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6865938	3L_6865938_DEL [dm3] 3L_6872838_DEL [dm6]	CT	C	5.529e^-4	0.95	INTERGENIC
3L	20289930	3L_20289930_SNP [dm3] 3L_20296830_SNP [dm6]	G	T	5.553e^-4	0.95	DOWNSTREAM Pex23 INTRON FRG1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	20292668	3L_20292668_SNP [dm3] 3L_20299568_SNP [dm6]	T	C	5.553e^-4	0.95	NON_SYNONYMOUS_CODING Pex23 INTRON CG6597 EXON CR43872
3L	20308885	3L_20308885_SNP [dm3] 3L_20315785_SNP [dm6]	A	T	5.553e^-4	0.95	UTR_3_PRIME alphaSnap INTRON CR43875
X	13678808	X_13678808_SNP [dm3] X_13784775_SNP [dm6]	C	T	5.566e^-4	0.95	INTRON inaE	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	22728543	3R_22728543_SNP [dm3] 3R_26902821_SNP [dm6]	C	T	5.568e^-4	0.95	INTRON T48	regulatory region REDfly_CRMs
2L	13841779	2L_13841779_SNP [dm3] 2L_13841779_SNP [dm6]	C	T	5.572e^-4	0.95	UPSTREAM CG33307 INTRON CenG1A	TF binding site mE1_TFBS_bab1
3L	4573043	3L_4573043_SNP [dm3] 3L_4573043_SNP [dm6]	A	T	5.573e^-4	0.95	INTRON CG42540
2L	7752650	2L_7752650_SNP [dm3] 2L_7752650_SNP [dm6]	G	A	5.578e^-4	0.95	SYNONYMOUS_CODING CG7203 UPSTREAM CR45718
2L	12521595	2L_12521595_SNP [dm3] 2L_12521595_SNP [dm6]	A	G	5.589e^-4	0.95	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	6893984	3L_6893984_SNP [dm3] 3L_6900884_SNP [dm6]	C	A	5.604e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	13368354	2R_13368354_SNP [dm3] 2R_17480849_SNP [dm6]	T	A	5.611e^-4	0.95	SYNONYMOUS_CODING veil UTR_3_PRIME CG43110	TF binding site mE1_TFBS_cad
3R	8718905	3R_8718905_SNP [dm3] 3R_12893183_SNP [dm6]	T	C	5.629e^-4	0.95	UPSTREAM CR44235 DOWNSTREAM CR33929 & 1 other INTERGENIC
2L	19385997	2L_19385997_SNP [dm3] 2L_19385997_SNP [dm6]	A	T	5.630e^-4	0.95	INTRON fon
X	11766451	X_11766451_SNP [dm3] X_11872418_SNP [dm6]	C	T	5.632e^-4	0.95	SYNONYMOUS_CODING CG11802 UPSTREAM CG15739	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16471856	3L_16471856_SNP [dm3] 3L_16478756_SNP [dm6]	G	C	5.664e^-4	0.95	INTRON CG33158 & 1 other
3R	26957067	3R_26957067_SNP [dm3] 3R_31131345_SNP [dm6]	C	A	5.682e^-4	0.95	UPSTREAM CG15556 & 1 other INTERGENIC
3R	26957072	3R_26957072_SNP [dm3] 3R_31131350_SNP [dm6]	A	T	5.682e^-4	0.95	UPSTREAM CG15556 & 1 other INTERGENIC
2R	12110474	2R_12110474_SNP [dm3] 2R_16222969_SNP [dm6]	A	G	5.684e^-4	0.95	UPSTREAM CG7798 DOWNSTREAM CG15706 EXON CR43898
2L	16756197	2L_16756197_SNP [dm3] 2L_16756197_SNP [dm6]	A	G	5.707e^-4	0.95	INTRON yellow-b
X	15027096	X_15027096_SNP [dm3] X_15133063_SNP [dm6]	C	A	5.717e^-4	0.95	INTRON drd
2L	11298608	2L_11298608_SNP [dm3] 2L_11298608_SNP [dm6]	A	G	5.717e^-4	0.95	INTERGENIC
3R	16439613	3R_16439613_SNP [dm3] 3R_20613891_SNP [dm6]	A	G	5.719e^-4	0.95	SYNONYMOUS_CODING CG15923	TF binding site mE1_TFBS_cad
3R	16439652	3R_16439652_SNP [dm3] 3R_20613930_SNP [dm6]	G	T	5.719e^-4	0.95	SYNONYMOUS_CODING CG15923	TF binding site mE1_TFBS_cad
X	9677456	X_9677456_SNP [dm3] X_9783423_SNP [dm6]	A	T	5.728e^-4	0.95	INTRON CG32698
2L	8795327	2L_8795327_SNP [dm3] 2L_8795327_SNP [dm6]	C	T	5.740e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	8038922	3L_8038922_DEL [dm3] 3L_8045822_DEL [dm6]	TG	C	5.752e^-4	0.95	INTRON nmo
X	18452896	X_18452896_SNP [dm3] X_18558863_SNP [dm6]	T	G	5.776e^-4	0.95	INTRON Bx
X	5939837	X_5939837_SNP [dm3] X_6045804_SNP [dm6]	C	A	5.797e^-4	0.95	SYNONYMOUS_CODING CG5937	TF binding site mE1_TFBS_chinmo
2R	16094197	2R_16094197_SNP [dm3] 2R_20206692_SNP [dm6]	C	T	5.800e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	8097834	3L_8097834_SNP [dm3] 3L_8104734_SNP [dm6]	G	T	5.811e^-4	0.95	SYNONYMOUS_CODING Ect4	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	5056658	3L_5056658_SNP [dm3] 3L_5056658_SNP [dm6]	T	G	5.816e^-4	0.95	INTRON Con
3L	12382238	3L_12382238_SNP [dm3] 3L_12389138_SNP [dm6]	C	G	5.823e^-4	0.95	INTRON Ncc69
3L	8438382	3L_8438382_SNP [dm3] 3L_8445282_SNP [dm6]	A	C	5.828e^-4	0.95	INTRON CG6983	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	580932	2L_580932_SNP [dm3] 2L_580932_SNP [dm6]	T	G	5.834e^-4	0.95	INTERGENIC
X	11959606	X_11959606_SNP [dm3] X_12065573_SNP [dm6]	G	A	5.843e^-4	0.95	DOWNSTREAM Muc11A INTRON CR43960 & 1 other
2L	2745933	2L_2745933_SNP [dm3] 2L_2745933_SNP [dm6]	T	C	5.857e^-4	0.95	SYNONYMOUS_CODING Cwc25 UPSTREAM CG9961 DOWNSTREAM Pgk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	1266448	X_1266448_SNP [dm3] X_1372415_SNP [dm6]	G	A	5.863e^-4	0.95	INTRON ssx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23510021	3R_23510021_SNP [dm3] 3R_27684299_SNP [dm6]	T	A	5.868e^-4	0.95	INTERGENIC
X	7883170	X_7883170_SNP [dm3] X_7989137_SNP [dm6]	G	A	5.891e^-4	0.95	INTERGENIC
2R	5022730	2R_5022730_SNP [dm3] 2R_9135225_SNP [dm6]	T	C	5.908e^-4	0.95	UTR_3_PRIME Hydr1 DOWNSTREAM alc	TF binding site mE1_TFBS_cad
2L	5508939	2L_5508939_SNP [dm3] 2L_5508939_SNP [dm6]	C	T	5.915e^-4	0.95	INTERGENIC
X	12609444	X_12609444_SNP [dm3] X_12715411_SNP [dm6]	A	T	5.921e^-4	0.95	INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2R	11828230	2R_11828230_SNP [dm3] 2R_15940725_SNP [dm6]	T	C	5.922e^-4	0.95	SYNONYMOUS_CODING CG8299 UPSTREAM Mlf	TF binding site mE1_TFBS_chinmo
2L	14729033	2L_14729033_SNP [dm3] 2L_14729033_SNP [dm6]	G	A	5.931e^-4	0.95	SYNONYMOUS_CODING CG42685
X	6509774	X_6509774_SNP [dm3] X_6615741_SNP [dm6]	C	A	5.964e^-4	0.95	INTRON pigs
3L	636699	3L_636699_SNP [dm3] 3L_636699_SNP [dm6]	T	C	5.964e^-4	0.95	DOWNSTREAM CR43423 EXON CR43334	regulatory region REDfly_CRMs
3L	1031621	3L_1031621_SNP [dm3] 3L_1031621_SNP [dm6]	C	A	5.975e^-4	0.95	INTRON trio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	9403046	2L_9403046_SNP [dm3] 2L_9403046_SNP [dm6]	T	A	5.981e^-4	0.95	INTRON Shawl
3R	15190149	3R_15190149_SNP [dm3] 3R_19364427_SNP [dm6]	A	T	5.982e^-4	0.95	INTERGENIC
X	9258200	X_9258200_SNP [dm3] X_9364167_SNP [dm6]	C	G	5.991e^-4	0.95	SYNONYMOUS_CODING mgl	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	9258236	X_9258236_SNP [dm3] X_9364203_SNP [dm6]	T	C	5.991e^-4	0.95	SYNONYMOUS_CODING mgl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15764759	2L_15764759_SNP [dm3] 2L_15764759_SNP [dm6]	T	C	5.998e^-4	0.95	INTRON CG3793	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19855421	2L_19855421_SNP [dm3] 2L_19855421_SNP [dm6]	T	C	6.007e^-4	0.95	INTRON sick
3R	15002597	3R_15002597_SNP [dm3] 3R_19176875_SNP [dm6]	A	T	6.007e^-4	0.95	UPSTREAM CG14282 INTERGENIC
2L	11396347	2L_11396347_SNP [dm3] 2L_11396347_SNP [dm6]	A	T	6.013e^-4	0.95	INTERGENIC	regulatory region REDfly_CRMs
3R	5207224	3R_5207224_SNP [dm3] 3R_9381502_SNP [dm6]	T	C	6.035e^-4	0.95	INTRON FER
X	10530846	X_10530846_SNP [dm3] X_10636813_SNP [dm6]	A	G	6.040e^-4	0.95	INTRON X11Lbeta
X	10530852	X_10530852_SNP [dm3] X_10636819_SNP [dm6]	T	A	6.040e^-4	0.95	INTRON X11Lbeta
3R	10840319	3R_10840319_SNP [dm3] 3R_15014597_SNP [dm6]	A	G	6.057e^-4	0.95	UPSTREAM CG14861 INTERGENIC
2L	1677424	2L_1677424_SNP [dm3] 2L_1677424_SNP [dm6]	G	A	6.096e^-4	0.95	INTRON chinmo
3L	17998213	3L_17998213_DEL [dm3] 3L_18005113_DEL [dm6]	TT	T	6.100e^-4	0.95	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	6717211	2L_6717211_SNP [dm3] 2L_6717211_SNP [dm6]	C	T	6.115e^-4	0.95	UPSTREAM Aatf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
2L	19592923	2L_19592923_SNP [dm3] 2L_19592923_SNP [dm6]	T	A	6.123e^-4	0.95	INTRON Lar	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi
2L	11465883	2L_11465883_SNP [dm3] 2L_11465883_SNP [dm6]	G	T	6.134e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_cad
2R	5019582	2R_5019582_DEL [dm3] 2R_9132077_DEL [dm6]	TT	T	6.143e^-4	0.95	UPSTREAM Hydr1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	5019796	2R_5019796_SNP [dm3] 2R_9132291_SNP [dm6]	G	C	6.143e^-4	0.95	UPSTREAM Hydr1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	10050952	2R_10050952_SNP [dm3] 2R_14163447_SNP [dm6]	G	A	6.150e^-4	0.95	SYNONYMOUS_CODING Tango7 DOWNSTREAM O-fut1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	16917719	2R_16917719_SNP [dm3] 2R_21030214_SNP [dm6]	C	G	6.159e^-4	0.95	UPSTREAM CR45148 INTERGENIC
2L	9564789	2L_9564789_SNP [dm3] 2L_9564789_SNP [dm6]	G	A	6.162e^-4	0.95	INTRON jp
2L	21068751	2L_21068751_SNP [dm3] 2L_21068751_SNP [dm6]	G	A	6.170e^-4	0.95	INTRON CG9265
2L	8795279	2L_8795279_SNP [dm3] 2L_8795279_SNP [dm6]	A	C	6.174e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	2748355	2L_2748355_SNP [dm3] 2L_2748355_SNP [dm6]	T	C	6.184e^-4	0.95	SYNONYMOUS_CODING Pgk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	1617064	3L_1617064_SNP [dm3] 3L_1617064_SNP [dm6]	A	G	6.191e^-4	0.95	SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170 DOWNSTREAM CG13926
2R	15159506	2R_15159506_SNP [dm3] 2R_19272001_SNP [dm6]	C	G	6.193e^-4	0.95	INTRON rib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2R	12425993	2R_12425993_SNP [dm3] 2R_16538488_SNP [dm6]	C	T	6.227e^-4	0.95	INTERGENIC
2L	9403466	2L_9403466_INS [dm3] 2L_9403466_INS [dm6]	C	CAGACCAAC	6.234e^-4	0.95	INTRON Shawl
3L	7097362	3L_7097362_SNP [dm3] 3L_7104262_SNP [dm6]	T	G	6.241e^-4	0.95	INTRON form3
2R	19113232	2R_19113232_SNP [dm3] 2R_23225709_SNP [dm6]	C	T	6.245e^-4	0.95	INTERGENIC
3L	10482848	3L_10482848_SNP [dm3] 3L_10489748_SNP [dm6]	A	T	6.257e^-4	0.95	INTRON A2bp1
2R	9448463	2R_9448463_SNP [dm3] 2R_13560958_SNP [dm6]	G	A	6.269e^-4	0.95	DOWNSTREAM CG13334 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13737980	3R_13737980_SNP [dm3] 3R_17912258_SNP [dm6]	T	G	6.286e^-4	0.95	DOWNSTREAM CG43445 INTRON Rim
3L	8296093	3L_8296093_SNP [dm3] 3L_8302993_SNP [dm6]	T	C	6.299e^-4	0.95	NON_SYNONYMOUS_CODING CG7194 DOWNSTREAM CG13671	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5937692	2L_5937692_SNP [dm3] 2L_5937692_SNP [dm6]	A	G	6.302e^-4	0.95	SYNONYMOUS_CODING dsf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4354727	3L_4354727_SNP [dm3] 3L_4354727_SNP [dm6]	A	G	6.319e^-4	0.95	INTRON Cip4
2L	1450828	2L_1450828_SNP [dm3] 2L_1450828_SNP [dm6]	C	T	6.327e^-4	0.95	INTERGENIC
2R	14418194	2R_14418194_SNP [dm3] 2R_18530689_SNP [dm6]	G	T	6.338e^-4	0.95	INTRON CG10924	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19580253	2R_19580253_SNP [dm3] 2R_23692730_SNP [dm6]	C	T	6.359e^-4	0.95	NON_SYNONYMOUS_CODING CG30183	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19580311	2R_19580311_SNP [dm3] 2R_23692788_SNP [dm6]	T	C	6.359e^-4	0.95	NON_SYNONYMOUS_CODING CG30183	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19580340	2R_19580340_SNP [dm3] 2R_23692817_SNP [dm6]	C	T	6.359e^-4	0.95	INTRON CG30183	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10008944	2L_10008944_SNP [dm3] 2L_10008944_SNP [dm6]	C	A	6.365e^-4	0.95	UPSTREAM Trp1 DOWNSTREAM CG4747 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10735861	3R_10735861_SNP [dm3] 3R_14910139_SNP [dm6]	T	C	6.383e^-4	0.95	INTERGENIC
2L	16855578	2L_16855578_SNP [dm3] 2L_16855578_SNP [dm6]	A	T	6.383e^-4	0.95	INTRON CG31809	transposable element FlyBase
2L	21814893	2L_21814893_SNP [dm3] 2L_21814893_SNP [dm6]	C	A	6.392e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6683314	3L_6683314_SNP [dm3] 3L_6690214_SNP [dm6]	T	C	6.394e^-4	0.95	NON_SYNONYMOUS_CODING SP1173
2L	3458969	2L_3458969_SNP [dm3] 2L_3458969_SNP [dm6]	T	C	6.398e^-4	0.95	SYNONYMOUS_CODING Sec5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7491494	3L_7491494_SNP [dm3] 3L_7498394_SNP [dm6]	G	A	6.412e^-4	0.95	SYNONYMOUS_CODING CG8539	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15169282	X_15169282_SNP [dm3] X_15275249_SNP [dm6]	T	C	6.416e^-4	0.95	INTERGENIC
2L	17859176	2L_17859176_SNP [dm3] 2L_17859176_SNP [dm6]	G	A	6.422e^-4	0.95	INTRON CadN2
3R	3838102	3R_3838102_SNP [dm3] 3R_8012380_SNP [dm6]	C	G	6.433e^-4	0.95	NON_SYNONYMOUS_CODING CG10435	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
2L	11152158	2L_11152158_SNP [dm3] 2L_11152158_SNP [dm6]	C	T	6.440e^-4	0.95	SYNONYMOUS_CODING CG6287	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13018582	X_13018582_SNP [dm3] X_13124549_SNP [dm6]	T	A	6.441e^-4	0.95	INTRON CG32638	TF binding site BDTNP1_TFBS_twi
3R	22760910	3R_22760910_SNP [dm3] 3R_26935188_SNP [dm6]	A	C	6.444e^-4	0.95	INTRON sda
2L	16105942	2L_16105942_SNP [dm3] 2L_16105942_SNP [dm6]	G	C	6.446e^-4	0.95	INTERGENIC
3R	10561379	3R_10561379_SNP [dm3] 3R_14735657_SNP [dm6]	A	T	6.448e^-4	0.95	INTRON eff	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	19710192	3R_19710192_SNP [dm3] 3R_23884470_SNP [dm6]	A	G	6.453e^-4	0.95	INTRON Pli
2L	22594248	2L_22594248_SNP [dm3] 2L_22701516_SNP [dm6]	A	T	6.455e^-4	0.95	INTRON CG40006
X	9421859	X_9421859_SNP [dm3] X_9527826_SNP [dm6]	C	T	6.459e^-4	0.95	INTRON CG32700
2L	8859876	2L_8859876_SNP [dm3] 2L_8859876_SNP [dm6]	G	A	6.460e^-4	0.95	INTERGENIC
X	1945856	X_1945856_DEL [dm3] X_2051823_DEL [dm6]	TTATT	T	6.463e^-4	0.95	UTR_5_PRIME CG4313 UPSTREAM CG4313 INTRON CG4313	TF binding site BDTNP1_TFBS_twi
X	4301995	X_4301995_SNP [dm3] X_4407962_SNP [dm6]	A	G	6.465e^-4	0.95	INTRON CR32773
X	4302006	X_4302006_SNP [dm3] X_4407973_SNP [dm6]	C	A	6.465e^-4	0.95	INTRON CR32773
X	4302109	X_4302109_DEL [dm3] X_4408076_DEL [dm6]	TT	T	6.465e^-4	0.95	INTRON CR32773
2L	2839387	2L_2839387_SNP [dm3] 2L_2839387_SNP [dm6]	A	T	6.470e^-4	0.95	SYNONYMOUS_CODING Cpr23B UPSTREAM CG2975 DOWNSTREAM CR45342	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	10255977	3R_10255977_SNP [dm3] 3R_14430255_SNP [dm6]	C	T	6.476e^-4	0.95	INTRON cv-c
2L	11480453	2L_11480453_SNP [dm3] 2L_11480453_SNP [dm6]	A	T	6.497e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_cad
X	5879501	X_5879501_SNP [dm3] X_5985468_SNP [dm6]	G	A	6.518e^-4	0.95	INTRON Grip
2L	14486859	2L_14486859_INS [dm3] 2L_14486859_INS [dm6]	T	TTAT	6.553e^-4	0.95	DOWNSTREAM CR44731 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	20031324	2L_20031324_SNP [dm3] 2L_20031324_SNP [dm6]	A	G	6.561e^-4	0.95	INTRON sNPF
X	8516262	X_8516262_SNP [dm3] X_8622229_SNP [dm6]	A	T	6.569e^-4	0.95	INTERGENIC
2L	1094908	2L_1094908_SNP [dm3] 2L_1094908_SNP [dm6]	C	T	6.571e^-4	0.95	INTRON CG4629
3L	8039242	3L_8039242_SNP [dm3] 3L_8046142_SNP [dm6]	T	C	6.574e^-4	0.95	INTRON nmo
X	11959676	X_11959676_SNP [dm3] X_12065643_SNP [dm6]	T	G	6.581e^-4	0.95	DOWNSTREAM Muc11A INTRON CR43960 & 1 other
3L	3628284	3L_3628284_SNP [dm3] 3L_3628284_SNP [dm6]	T	C	6.585e^-4	0.95	INTRON dar1
X	11657892	X_11657892_SNP [dm3] X_11763859_SNP [dm6]	G	A	6.596e^-4	0.95	INTRON m & 1 other
3R	20714258	3R_20714258_SNP [dm3] 3R_24888536_SNP [dm6]	C	A	6.619e^-4	0.95	INTRON CG31121	TF binding site mE1_TFBS_cad
2L	6197914	2L_6197914_SNP [dm3] 2L_6197914_SNP [dm6]	G	A	6.624e^-4	0.95	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16910359	3R_16910359_SNP [dm3] 3R_21084637_SNP [dm6]	G	A	6.630e^-4	0.95	SYNONYMOUS_CODING RhoGAP93B
3L	20706488	3L_20706488_SNP [dm3] 3L_20713388_SNP [dm6]	A	C	6.644e^-4	0.95	UPSTREAM CG34260 INTRON cmpy
2R	11838639	2R_11838639_SNP [dm3] 2R_15951134_SNP [dm6]	T	G	6.651e^-4	0.95	UTR_5_PRIME Strn-Mlck DOWNSTREAM Strn-Mlck INTRON Strn-Mlck
2R	11839126	2R_11839126_SNP [dm3] 2R_15951621_SNP [dm6]	T	A	6.651e^-4	0.95	UTR_3_PRIME Strn-Mlck UPSTREAM Strn-Mlck INTRON Strn-Mlck
2R	11839311	2R_11839311_SNP [dm3] 2R_15951806_SNP [dm6]	G	A	6.651e^-4	0.95	NON_SYNONYMOUS_CODING Strn-Mlck UPSTREAM Strn-Mlck INTRON Strn-Mlck
2R	11839363	2R_11839363_DEL [dm3] 2R_15951858_DEL [dm6]	ATTTATTAACCAACCACAA...	A	6.651e^-4	0.95	SPLICE_SITE_DONOR Strn-Mlck SPLICE_SITE_REGION Strn-Mlck UTR_5_PRIME Strn-Mlck UPSTREAM Strn-Mlck INTRON Strn-Mlck
2R	11839386	2R_11839386_SNP [dm3] 2R_15951881_SNP [dm6]	T	C	6.651e^-4	0.95	START_GAINED Strn-Mlck UTR_5_PRIME Strn-Mlck UPSTREAM Strn-Mlck INTRON Strn-Mlck
3R	23603736	3R_23603736_INS [dm3] 3R_27778014_INS [dm6]	G	GGTGTG	6.658e^-4	0.95	INTRON CG34353
3L	7506152	3L_7506152_SNP [dm3] 3L_7513052_SNP [dm6]	A	T	6.663e^-4	0.95	SYNONYMOUS_CODING CG7546	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18563084	2L_18563084_DEL [dm3] 2L_18563084_DEL [dm6]	TT	T	6.685e^-4	0.95	UTR_5_PRIME Pde11 INTRON Pde11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7078085	2R_7078085_SNP [dm3] 2R_11190580_SNP [dm6]	C	T	6.697e^-4	0.95	INTRON shn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	3361649	X_3361649_SNP [dm3] X_3467616_SNP [dm6]	T	C	6.699e^-4	0.95	INTRON CR44999 & 1 other
2L	13433002	2L_13433002_SNP [dm3] 2L_13433002_SNP [dm6]	G	C	6.720e^-4	0.95	INTRON CG42784
X	13963290	X_13963290_INS [dm3] X_14069257_INS [dm6]	G	GT	6.725e^-4	0.95	INTERGENIC
3L	5609033	3L_5609033_SNP [dm3] 3L_5615933_SNP [dm6]	C	T	6.733e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	19574085	3R_19574085_SNP [dm3] 3R_23748363_SNP [dm6]	T	C	6.747e^-4	0.95	SYNONYMOUS_CODING Hmgcr	TF binding site mE1_TFBS_cad
2R	11971124	2R_11971124_SNP [dm3] 2R_16083619_SNP [dm6]	G	A	6.757e^-4	0.95	SPLICE_SITE_REGION Dg INTRON Dg	TF binding site mE1_TFBS_cad
X	15724510	X_15724510_SNP [dm3] X_15830477_SNP [dm6]	G	A	6.794e^-4	0.95	SYNONYMOUS_CODING Chc	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	15724639	X_15724639_SNP [dm3] X_15830606_SNP [dm6]	T	G	6.794e^-4	0.95	SYNONYMOUS_CODING Chc	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	9646538	3L_9646538_SNP [dm3] 3L_9653438_SNP [dm6]	C	T	6.810e^-4	0.95	INTRON fry & 1 other
2R	6854911	2R_6854911_SNP [dm3] 2R_10967406_SNP [dm6]	A	G	6.820e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	15183089	X_15183089_SNP [dm3] X_15289056_SNP [dm6]	C	A	6.824e^-4	0.95	UPSTREAM CR44663 INTERGENIC
2L	14764753	2L_14764753_SNP [dm3] 2L_14764753_SNP [dm6]	C	T	6.836e^-4	0.95	DOWNSTREAM CSN1a INTERGENIC
3L	8651791	3L_8651791_SNP [dm3] 3L_8658691_SNP [dm6]	G	A	6.858e^-4	0.95	INTERGENIC
X	10736488	X_10736488_SNP [dm3] X_10842455_SNP [dm6]	C	T	6.858e^-4	0.95	SYNONYMOUS_CODING CG15209 DOWNSTREAM CG32669 INTRON sbr
2R	13382884	2R_13382884_SNP [dm3] 2R_17495379_SNP [dm6]	A	C	6.859e^-4	0.95	SYNONYMOUS_CODING CG30103	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16749416	X_16749416_SNP [dm3] X_16855383_SNP [dm6]	T	C	6.869e^-4	0.95	INTRON CG13003
3R	19628040	3R_19628040_SNP [dm3] 3R_23802318_SNP [dm6]	C	T	6.894e^-4	0.95	DOWNSTREAM mbc INTRON CG33111
3L	18496853	3L_18496853_SNP [dm3] 3L_18503753_SNP [dm6]	G	A	6.894e^-4	0.95	INTERGENIC
2R	12122914	2R_12122914_SNP [dm3] 2R_16235409_SNP [dm6]	T	C	6.907e^-4	0.95	UPSTREAM CG7786 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19073922	2R_19073922_SNP [dm3] 2R_23186399_SNP [dm6]	C	T	6.918e^-4	0.95	INTRON CG34371	TF binding site BDTNP1_TFBS_twi
3L	20319495	3L_20319495_DEL [dm3] 3L_20326395_DEL [dm6]	AACAAAAATAATA...	A	6.920e^-4	0.95	INTERGENIC	transposable element FlyBase
3R	13920379	3R_13920379_SNP [dm3] 3R_18094657_SNP [dm6]	C	G	6.927e^-4	0.95	INTRON sr
3L	7303395	3L_7303395_SNP [dm3] 3L_7310295_SNP [dm6]	G	T	6.938e^-4	0.95	INTRON unc-13-4A
3R	25556919	3R_25556919_SNP [dm3] 3R_29731197_SNP [dm6]	T	A	6.971e^-4	0.95	NON_SYNONYMOUS_CODING Kul UTR_3_PRIME Kul	TF binding site mE1_TFBS_cad
2L	1280837	2L_1280837_SNP [dm3] 2L_1280837_SNP [dm6]	T	C	6.983e^-4	0.95	INTRON robo3
2R	16482467	2R_16482467_SNP [dm3] 2R_20594962_SNP [dm6]	C	G	6.984e^-4	0.95	INTRON bl
3L	13974707	3L_13974707_SNP [dm3] 3L_13981607_SNP [dm6]	A	C	6.994e^-4	0.95	UTR_3_PRIME CG17364 INTRON CG17364
2L	10050987	2L_10050987_SNP [dm3] 2L_10050987_SNP [dm6]	C	G	7.000e^-4	0.95	UTR_3_PRIME CG33301 UPSTREAM CR44874 DOWNSTREAM CG33301
3L	7500032	3L_7500032_SNP [dm3] 3L_7506932_SNP [dm6]	A	T	7.009e^-4	0.95	UPSTREAM CG7548 INTERGENIC	TF binding site mE1_TFBS_cad
3R	18574242	3R_18574242_SNP [dm3] 3R_22748520_SNP [dm6]	C	G	7.009e^-4	0.95	SYNONYMOUS_CODING CG31139 UPSTREAM CG17141 DOWNSTREAM rumi	TF binding site mE1_TFBS_cad
2L	9888574	2L_9888574_SNP [dm3] 2L_9888574_SNP [dm6]	T	A	7.020e^-4	0.95	INTRON FKBP59	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12239563	2R_12239563_SNP [dm3] 2R_16352058_SNP [dm6]	G	T	7.025e^-4	0.95	INTERGENIC
3L	3055901	3L_3055901_SNP [dm3] 3L_3055901_SNP [dm6]	G	T	7.039e^-4	0.95	DOWNSTREAM CG1271 & 2 others INTERGENIC
3L	5529707	3L_5529707_SNP [dm3] 3L_5536607_SNP [dm6]	C	T	7.081e^-4	0.95	UPSTREAM CG13285 INTERGENIC	TF binding site mE1_TFBS_inv
3L	2633036	3L_2633036_SNP [dm3] 3L_2633036_SNP [dm6]	G	A	7.088e^-4	0.95	INTRON MEP-1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	907605	X_907605_SNP [dm3] X_1013572_SNP [dm6]	G	A	7.104e^-4	0.95	DOWNSTREAM CG14631 & 1 other INTRON su_w[a]_
2R	9433914	2R_9433914_SNP [dm3] 2R_13546409_SNP [dm6]	C	A	7.119e^-4	0.95	UPSTREAM CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3R	26867604	3R_26867604_SNP [dm3] 3R_31041882_SNP [dm6]	C	G	7.168e^-4	0.95	SPLICE_SITE_REGION CanA1 INTRON CanA1
3L	10260971	3L_10260971_SNP [dm3] 3L_10267871_SNP [dm6]	G	T	7.192e^-4	0.95	UPSTREAM can INTERGENIC	regulatory region REDfly_CRMs
3L	6585519	3L_6585519_SNP [dm3] 3L_6592419_SNP [dm6]	A	G	7.193e^-4	0.95	UTR_3_PRIME CG18769 DOWNSTREAM CG18769
X	9954179	X_9954179_DEL [dm3] X_10060146_DEL [dm6]	TTTT	T	7.208e^-4	0.95	INTRON CG15312	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10169913	2L_10169913_SNP [dm3] 2L_10169913_SNP [dm6]	T	C	7.209e^-4	0.95	INTRON CG44153
2L	1036580	2L_1036580_SNP [dm3] 2L_1036580_SNP [dm6]	A	T	7.218e^-4	0.95	UPSTREAM CG4415 INTRON IA-2	TF binding site BDTNP1_TFBS_twi
2L	4619387	2L_4619387_SNP [dm3] 2L_4619387_SNP [dm6]	T	A	7.218e^-4	0.95	UPSTREAM CR44609 INTERGENIC
2L	4619398	2L_4619398_SNP [dm3] 2L_4619398_SNP [dm6]	C	T	7.218e^-4	0.95	UPSTREAM CR44609 INTERGENIC
3L	8286314	3L_8286314_SNP [dm3] 3L_8293214_SNP [dm6]	G	T	7.219e^-4	0.95	INTRON CG7201
3L	8286321	3L_8286321_SNP [dm3] 3L_8293221_SNP [dm6]	A	T	7.219e^-4	0.95	INTRON CG7201
3L	6687064	3L_6687064_SNP [dm3] 3L_6693964_SNP [dm6]	G	A	7.226e^-4	0.95	INTRON SP1173
3L	6687072	3L_6687072_SNP [dm3] 3L_6693972_SNP [dm6]	G	A	7.226e^-4	0.95	INTRON SP1173
3L	6687094	3L_6687094_SNP [dm3] 3L_6693994_SNP [dm6]	A	C	7.226e^-4	0.95	INTRON SP1173
2R	19446767	2R_19446767_SNP [dm3] 2R_23559244_SNP [dm6]	A	T	7.233e^-4	0.95	INTRON ItgalphaPS5	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19446768	2R_19446768_SNP [dm3] 2R_23559245_SNP [dm6]	T	A	7.233e^-4	0.95	INTRON ItgalphaPS5	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14579074	3L_14579074_SNP [dm3] 3L_14585974_SNP [dm6]	C	T	7.267e^-4	0.95	INTRON HGTX	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	13553816	3L_13553816_DEL [dm3] 3L_13560716_DEL [dm6]	GTCGACGTAGCGACACT...	G	7.279e^-4	0.95	INTRON bru-3
2L	18288750	2L_18288750_SNP [dm3] 2L_18288750_SNP [dm6]	G	A	7.280e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2L	22357324	2L_22357324_SNP [dm3] 2L_22357324_SNP [dm6]	A	G	7.280e^-4	0.95	INTRON CG17018
2R	10002109	2R_10002109_SNP [dm3] 2R_14114604_SNP [dm6]	G	T	7.297e^-4	0.95	INTRON Prosap	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	17003110	X_17003110_SNP [dm3] X_17109077_SNP [dm6]	T	C	7.297e^-4	0.95	INTRON CG5004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8707098	2L_8707098_SNP [dm3] 2L_8707098_SNP [dm6]	C	T	7.302e^-4	0.95	SYNONYMOUS_CODING CG9314 INTRON Hnf4
2R	19476514	2R_19476514_SNP [dm3] 2R_23588991_SNP [dm6]	T	A	7.310e^-4	0.95	INTRON apt	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	19476533	2R_19476533_SNP [dm3] 2R_23589010_SNP [dm6]	T	G	7.310e^-4	0.95	INTRON apt	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	19476562	2R_19476562_SNP [dm3] 2R_23589039_SNP [dm6]	C	T	7.310e^-4	0.95	INTRON apt	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	8516190	X_8516190_SNP [dm3] X_8622157_SNP [dm6]	G	A	7.315e^-4	0.95	INTERGENIC
X	8516191	X_8516191_DEL [dm3] X_8622158_DEL [dm6]	AAAGTCT	A	7.315e^-4	0.95	INTERGENIC
X	8516209	X_8516209_SNP [dm3] X_8622176_SNP [dm6]	A	G	7.315e^-4	0.95	INTERGENIC
X	8516254	X_8516254_SNP [dm3] X_8622221_SNP [dm6]	A	G	7.315e^-4	0.95	INTERGENIC
X	8516256	X_8516256_SNP [dm3] X_8622223_SNP [dm6]	A	T	7.315e^-4	0.95	INTERGENIC
X	8516287	X_8516287_SNP [dm3] X_8622254_SNP [dm6]	A	G	7.315e^-4	0.95	INTERGENIC
2R	20257923	2R_20257923_SNP [dm3] 2R_24370400_SNP [dm6]	G	A	7.320e^-4	0.95	UPSTREAM CR44811 INTRON bs	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11609612	2L_11609612_SNP [dm3] 2L_11609612_SNP [dm6]	A	G	7.325e^-4	0.95	DOWNSTREAM spag4 INTRON kek2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10220365	3L_10220365_SNP [dm3] 3L_10227265_SNP [dm6]	A	G	7.329e^-4	0.95	INTERGENIC
3L	11839085	3L_11839085_SNP [dm3] 3L_11845985_SNP [dm6]	T	G	7.332e^-4	0.95	INTERGENIC
3R	15739784	3R_15739784_DEL [dm3] 3R_19914062_DEL [dm6]	GTCAAATACCTAACTACTTT...	G	7.336e^-4	0.95	UTR_3_PRIME RhoGAP92B DOWNSTREAM CG42508 & 2 others
3R	15740063	3R_15740063_SNP [dm3] 3R_19914341_SNP [dm6]	G	A	7.336e^-4	0.95	UTR_3_PRIME CG42508 DOWNSTREAM Xport & 2 others
2L	14764720	2L_14764720_SNP [dm3] 2L_14764720_SNP [dm6]	C	A	7.358e^-4	0.95	DOWNSTREAM CSN1a INTERGENIC
2L	14764736	2L_14764736_SNP [dm3] 2L_14764736_SNP [dm6]	T	C	7.358e^-4	0.95	DOWNSTREAM CSN1a INTERGENIC
2L	9403499	2L_9403499_SNP [dm3] 2L_9403499_SNP [dm6]	T	G	7.368e^-4	0.95	INTRON Shawl
3R	9754366	3R_9754366_SNP [dm3] 3R_13928644_SNP [dm6]	T	A	7.370e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9261576	3L_9261576_SNP [dm3] 3L_9268476_SNP [dm6]	C	G	7.387e^-4	0.95	INTRON GluRIB
3L	1042359	3L_1042359_SNP [dm3] 3L_1042359_SNP [dm6]	C	T	7.388e^-4	0.95	INTRON bab1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12459369	2R_12459369_SNP [dm3] 2R_16571864_SNP [dm6]	C	G	7.392e^-4	0.95	UPSTREAM CG4927 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn
X	16468294	X_16468294_SNP [dm3] X_16574261_SNP [dm6]	G	A	7.399e^-4	0.95	INTRON CanA-14F	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_h mE1_TFBS_HSA
3L	3622113	3L_3622113_SNP [dm3] 3L_3622113_SNP [dm6]	T	C	7.410e^-4	0.95	INTERGENIC
3R	22693788	3R_22693788_SNP [dm3] 3R_26868066_SNP [dm6]	A	T	7.412e^-4	0.95	INTRON His2Av	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D
3R	22693815	3R_22693815_SNP [dm3] 3R_26868093_SNP [dm6]	T	A	7.412e^-4	0.95	INTRON His2Av	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D
3R	22693830	3R_22693830_SNP [dm3] 3R_26868108_SNP [dm6]	A	T	7.412e^-4	0.95	INTRON His2Av	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D
2R	4530817	2R_4530817_SNP [dm3] 2R_8643312_SNP [dm6]	C	T	7.416e^-4	0.95	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7503507	3L_7503507_SNP [dm3] 3L_7510407_SNP [dm6]	G	A	7.416e^-4	0.95	UPSTREAM CG7546 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	12118222	2L_12118222_SNP [dm3] 2L_12118222_SNP [dm6]	G	T	7.417e^-4	0.95	INTRON CG17211
2R	12238478	2R_12238478_SNP [dm3] 2R_16350973_SNP [dm6]	C	A	7.421e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14424402	2R_14424402_SNP [dm3] 2R_18536897_SNP [dm6]	G	A	7.467e^-4	0.95	UTR_5_PRIME Pepck UTR_3_PRIME CG45087	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10233014	2L_10233014_SNP [dm3] 2L_10233014_SNP [dm6]	C	G	7.475e^-4	0.95	INTRON eEF1delta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11838023	2R_11838023_SNP [dm3] 2R_15950518_SNP [dm6]	A	G	7.482e^-4	0.95	INTRON Strn-Mlck	TF binding site mE1_TFBS_HSA
2R	11838030	2R_11838030_SNP [dm3] 2R_15950525_SNP [dm6]	A	G	7.482e^-4	0.95	INTRON Strn-Mlck	TF binding site mE1_TFBS_HSA
2L	11010544	2L_11010544_SNP [dm3] 2L_11010544_SNP [dm6]	C	T	7.492e^-4	0.95	SYNONYMOUS_CODING Art8 UTR_3_PRIME Nup154 UPSTREAM dUTPase DOWNSTREAM Nup154	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	12252047	2R_12252047_SNP [dm3] 2R_16364542_SNP [dm6]	G	C	7.501e^-4	0.95	UTR_5_PRIME CG15711 UPSTREAM CG15711
2L	7544587	2L_7544587_SNP [dm3] 2L_7544587_SNP [dm6]	C	G	7.511e^-4	0.95	UPSTREAM RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	13258053	2L_13258053_SNP [dm3] 2L_13258053_SNP [dm6]	C	T	7.531e^-4	0.95	NON_SYNONYMOUS_CODING CG31851 DOWNSTREAM CG31728
3L	12036192	3L_12036192_DEL [dm3] 3L_12043092_DEL [dm6]	AC	A	7.531e^-4	0.95	INTRON rols & 1 other	TF binding site mE1_TFBS_chinmo
3L	7097737	3L_7097737_SNP [dm3] 3L_7104637_SNP [dm6]	T	A	7.552e^-4	0.95	INTRON form3
2L	6717230	2L_6717230_SNP [dm3] 2L_6717230_SNP [dm6]	C	A	7.577e^-4	0.95	UPSTREAM Aatf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
3R	16873543	3R_16873543_SNP [dm3] 3R_21047821_SNP [dm6]	C	T	7.592e^-4	0.95	UTR_3_PRIME CG7079 UPSTREAM CG31207
X	4301242	X_4301242_SNP [dm3] X_4407209_SNP [dm6]	C	T	7.613e^-4	0.95	INTRON CR32773
3L	7505444	3L_7505444_SNP [dm3] 3L_7512344_SNP [dm6]	A	C	7.619e^-4	0.95	SYNONYMOUS_CODING CG7546	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3358369	2L_3358369_SNP [dm3] 2L_3358369_SNP [dm6]	C	T	7.629e^-4	0.95	NON_SYNONYMOUS_CODING CG8838 DOWNSTREAM CG34394	TF binding site mE1_TFBS_cad
2R	5870789	2R_5870789_SNP [dm3] 2R_9983284_SNP [dm6]	G	T	7.629e^-4	0.95	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	4117481	3L_4117481_SNP [dm3] 3L_4117481_SNP [dm6]	G	A	7.642e^-4	0.95	INTRON Chd64
2L	20607899	2L_20607899_SNP [dm3] 2L_20607899_SNP [dm6]	C	T	7.657e^-4	0.95	UPSTREAM CR43608 INTRON CR44909
3L	20319719	3L_20319719_SNP [dm3] 3L_20326619_SNP [dm6]	A	C	7.664e^-4	0.95	INTERGENIC	transposable element FlyBase
3L	3361782	3L_3361782_SNP [dm3] 3L_3361782_SNP [dm6]	A	G	7.678e^-4	0.95	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
3L	13114114	3L_13114114_SNP [dm3] 3L_13121014_SNP [dm6]	G	T	7.693e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	8801544	2L_8801544_SNP [dm3] 2L_8801544_SNP [dm6]	A	G	7.704e^-4	0.95	INTERGENIC
2L	11628600	2L_11628600_SNP [dm3] 2L_11628600_SNP [dm6]	G	A	7.707e^-4	0.95	INTERGENIC
X	5938822	X_5938822_SNP [dm3] X_6044789_SNP [dm6]	C	A	7.709e^-4	0.95	SYNONYMOUS_CODING CG5937	TF binding site mE1_TFBS_chinmo
3R	5114357	3R_5114357_SNP [dm3] 3R_9288635_SNP [dm6]	G	A	7.710e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_sna
3R	5114359	3R_5114359_SNP [dm3] 3R_9288637_SNP [dm6]	T	A	7.710e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_sna
3L	4795448	3L_4795448_SNP [dm3] 3L_4795448_SNP [dm6]	C	A	7.711e^-4	0.95	INTRON RhoGEF64C
2R	7474435	2R_7474435_SNP [dm3] 2R_11586930_SNP [dm6]	A	C	7.749e^-4	0.95	SYNONYMOUS_CODING tou
3L	646803	3L_646803_SNP [dm3] 3L_646803_SNP [dm6]	T	G	7.753e^-4	0.95	INTERGENIC
2L	6717330	2L_6717330_SNP [dm3] 2L_6717330_SNP [dm6]	G	C	7.763e^-4	0.95	UPSTREAM Aatf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA
2L	6717346	2L_6717346_SNP [dm3] 2L_6717346_SNP [dm6]	C	A	7.763e^-4	0.95	UPSTREAM Aatf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA
2L	6717366	2L_6717366_SNP [dm3] 2L_6717366_SNP [dm6]	T	C	7.763e^-4	0.95	UPSTREAM Aatf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA
2L	6717398	2L_6717398_SNP [dm3] 2L_6717398_SNP [dm6]	T	C	7.763e^-4	0.95	UPSTREAM Aatf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA
2L	6717426	2L_6717426_SNP [dm3] 2L_6717426_SNP [dm6]	A	G	7.763e^-4	0.95	UPSTREAM Aatf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA
2L	6717427	2L_6717427_SNP [dm3] 2L_6717427_SNP [dm6]	C	A	7.763e^-4	0.95	UPSTREAM Aatf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA
2L	6717591	2L_6717591_SNP [dm3] 2L_6717591_SNP [dm6]	A	T	7.763e^-4	0.95	UPSTREAM Aatf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	9685594	2R_9685594_SNP [dm3] 2R_13798089_SNP [dm6]	C	T	7.773e^-4	0.95	INTRON Cpr50Cb
3L	7097308	3L_7097308_SNP [dm3] 3L_7104208_SNP [dm6]	A	G	7.775e^-4	0.95	INTRON form3
2R	19111038	2R_19111038_DEL [dm3] 2R_23223515_DEL [dm6]	GG	G	7.775e^-4	0.95	INTERGENIC
3R	12200992	3R_12200992_SNP [dm3] 3R_16375270_SNP [dm6]	G	A	7.777e^-4	0.95	UTR_3_PRIME ss DOWNSTREAM ss
2R	16959106	2R_16959106_SNP [dm3] 2R_21071601_SNP [dm6]	G	T	7.786e^-4	0.95	SYNONYMOUS_CODING CG10527 EXON CR44704	TF binding site mE1_TFBS_cad
2R	9185478	2R_9185478_SNP [dm3] 2R_13297973_SNP [dm6]	A	G	7.801e^-4	0.95	SYNONYMOUS_CODING CG4734	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6014140	2L_6014140_SNP [dm3] 2L_6014140_SNP [dm6]	T	A	7.807e^-4	0.95	INTRON H2.0
2L	6014146	2L_6014146_SNP [dm3] 2L_6014146_SNP [dm6]	C	A	7.807e^-4	0.95	INTRON H2.0
3L	7503534	3L_7503534_SNP [dm3] 3L_7510434_SNP [dm6]	A	C	7.817e^-4	0.95	UPSTREAM CG7546 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	26813657	3R_26813657_SNP [dm3] 3R_30987935_SNP [dm6]	C	A	7.820e^-4	0.95	INTRON 5-HT7
3R	26813658	3R_26813658_SNP [dm3] 3R_30987936_SNP [dm6]	T	A	7.820e^-4	0.95	INTRON 5-HT7
3L	8286197	3L_8286197_SNP [dm3] 3L_8293097_SNP [dm6]	A	T	7.830e^-4	0.95	INTRON CG7201
2L	18249824	2L_18249824_SNP [dm3] 2L_18249824_SNP [dm6]	G	T	7.848e^-4	0.95	INTRON CG42750
3R	12375110	3R_12375110_SNP [dm3] 3R_16549388_SNP [dm6]	C	G	7.849e^-4	0.95	INTRON CG42342
3R	12375123	3R_12375123_INS [dm3] 3R_16549401_INS [dm6]	A	TTT	7.849e^-4	0.95	INTRON CG42342
3L	12337737	3L_12337737_SNP [dm3] 3L_12344637_SNP [dm6]	T	C	7.852e^-4	0.95	INTRON CrzR
3R	25149503	3R_25149503_SNP [dm3] 3R_29323781_SNP [dm6]	C	G	7.876e^-4	0.95	INTERGENIC
3L	16824296	3L_16824296_SNP [dm3] 3L_16831196_SNP [dm6]	A	T	7.879e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	15331635	3L_15331635_SNP [dm3] 3L_15338535_SNP [dm6]	G	A	7.892e^-4	0.95	SYNONYMOUS_CODING Toll-6	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	13781796	2R_13781796_SNP [dm3] 2R_17894291_SNP [dm6]	G	C	7.928e^-4	0.95	NON_SYNONYMOUS_CODING CG14492 UPSTREAM CG14491 INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13781797	2R_13781797_SNP [dm3] 2R_17894292_SNP [dm6]	G	A	7.928e^-4	0.95	SYNONYMOUS_CODING CG14492 UPSTREAM CG14491 INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	16261932	3L_16261932_SNP [dm3] 3L_16268832_SNP [dm6]	G	A	7.932e^-4	0.95	UPSTREAM CG4950 & 1 other INTERGENIC
2R	18623972	2R_18623972_SNP [dm3] 2R_22736467_SNP [dm6]	A	G	7.932e^-4	0.95	INTRON jbug
2L	2085432	2L_2085432_SNP [dm3] 2L_2085432_SNP [dm6]	A	G	7.934e^-4	0.95	INTRON dpr3
2R	18625305	2R_18625305_SNP [dm3] 2R_22737800_SNP [dm6]	T	C	7.942e^-4	0.95	UPSTREAM jbug INTRON jbug
X	16749403	X_16749403_DEL [dm3] X_16855370_DEL [dm6]	CC	C	7.951e^-4	0.95	INTRON CG13003
2L	7842283	2L_7842283_SNP [dm3] 2L_7842283_SNP [dm6]	T	C	7.960e^-4	0.95	INTERGENIC
3L	646846	3L_646846_SNP [dm3] 3L_646846_SNP [dm6]	C	T	7.969e^-4	0.95	INTERGENIC
2L	9972159	2L_9972159_DEL [dm3] 2L_9972159_DEL [dm6]	TTGT	T	7.976e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9972169	2L_9972169_SNP [dm3] 2L_9972169_SNP [dm6]	G	T	7.976e^-4	0.95	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	11930699	2R_11930699_SNP [dm3] 2R_16043194_SNP [dm6]	T	C	7.986e^-4	0.95	INTRON SP2353	TF binding site mE1_TFBS_cad
2R	11930711	2R_11930711_SNP [dm3] 2R_16043206_SNP [dm6]	G	A	7.986e^-4	0.95	INTRON SP2353	TF binding site mE1_TFBS_cad
3L	7497209	3L_7497209_SNP [dm3] 3L_7504109_SNP [dm6]	G	T	8.002e^-4	0.95	INTERGENIC
2L	9561704	2L_9561704_SNP [dm3] 2L_9561704_SNP [dm6]	G	A	8.013e^-4	0.95	INTRON jp
2R	14007598	2R_14007598_SNP [dm3] 2R_18120093_SNP [dm6]	A	G	8.016e^-4	0.95	SYNONYMOUS_CODING stau	TF binding site mE1_TFBS_cad
2L	2633965	2L_2633965_MNP [dm3] 2L_2633965_MNP [dm6]	CGT	GTC	8.018e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2633971	2L_2633971_DEL [dm3] 2L_2633971_DEL [dm6]	TGTTG	T	8.018e^-4	0.95	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9167663	2L_9167663_SNP [dm3] 2L_9167663_SNP [dm6]	G	A	8.044e^-4	0.95	INTRON tai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	9236003	2L_9236003_SNP [dm3] 2L_9236003_SNP [dm6]	A	T	8.067e^-4	0.95	DOWNSTREAM tRNA:CR31885 INTRON tai
3R	19879705	3R_19879705_SNP [dm3] 3R_24053983_SNP [dm6]	A	G	8.093e^-4	0.95	UPSTREAM CG6000 & 1 other DOWNSTREAM CG5991 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	921614	X_921614_DEL [dm3] X_1027581_DEL [dm6]	CTC	C	8.120e^-4	0.95	UPSTREAM CG32814 & 1 other DOWNSTREAM CDC45L INTRON su_w[a]_ & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	12378342	X_12378342_SNP [dm3] X_12484309_SNP [dm6]	T	A	8.128e^-4	0.95	INTERGENIC
2L	12572715	2L_12572715_SNP [dm3] 2L_12572715_SNP [dm6]	C	T	8.136e^-4	0.95	INTERGENIC
3L	8281303	3L_8281303_SNP [dm3] 3L_8288203_SNP [dm6]	C	T	8.142e^-4	0.95	SYNONYMOUS_CODING cert
2R	5019728	2R_5019728_SNP [dm3] 2R_9132223_SNP [dm6]	G	T	8.160e^-4	0.95	UPSTREAM Hydr1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	16910668	3R_16910668_SNP [dm3] 3R_21084946_SNP [dm6]	A	G	8.167e^-4	0.95	INTRON RhoGAP93B
3R	16910670	3R_16910670_SNP [dm3] 3R_21084948_SNP [dm6]	G	A	8.167e^-4	0.95	INTRON RhoGAP93B
2L	19907972	2L_19907972_INS [dm3] 2L_19907972_INS [dm6]	T	TT	8.209e^-4	0.95	INTRON sick
2L	13467666	2L_13467666_SNP [dm3] 2L_13467666_SNP [dm6]	C	A	8.209e^-4	0.95	INTRON CG42784
3L	8039249	3L_8039249_SNP [dm3] 3L_8046149_SNP [dm6]	G	C	8.221e^-4	0.95	INTRON nmo
3L	8039250	3L_8039250_SNP [dm3] 3L_8046150_SNP [dm6]	G	T	8.221e^-4	0.95	INTRON nmo
3L	15670563	3L_15670563_SNP [dm3] 3L_15677463_SNP [dm6]	A	G	8.227e^-4	0.95	INTERGENIC
3L	8286344	3L_8286344_SNP [dm3] 3L_8293244_SNP [dm6]	T	G	8.277e^-4	0.95	INTRON CG7201
2R	16112880	2R_16112880_SNP [dm3] 2R_20225375_SNP [dm6]	T	C	8.281e^-4	0.95	INTERGENIC
3R	25429121	3R_25429121_SNP [dm3] 3R_29603399_SNP [dm6]	C	T	8.285e^-4	0.95	INTRON alph
2R	12252046	2R_12252046_SNP [dm3] 2R_16364541_SNP [dm6]	C	G	8.307e^-4	0.95	UTR_5_PRIME CG15711 UPSTREAM CG15711
3R	25724474	3R_25724474_SNP [dm3] 3R_29898752_SNP [dm6]	C	G	8.314e^-4	0.95	UTR_3_PRIME CG31038 INTRON CG31038
3R	21777358	3R_21777358_SNP [dm3] 3R_25951636_SNP [dm6]	C	T	8.315e^-4	0.95	INTRON CCAP-R	TF binding site mE1_TFBS_inv
2L	16108397	2L_16108397_SNP [dm3] 2L_16108397_SNP [dm6]	T	C	8.315e^-4	0.95	INTERGENIC
3L	17113806	3L_17113806_DEL [dm3] 3L_17120706_DEL [dm6]	TGACTAAAGTAGAGGGTATA...	T	8.316e^-4	0.95	INTRON Rbp6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
3L	3362268	3L_3362268_SNP [dm3] 3L_3362268_SNP [dm6]	T	G	8.327e^-4	0.95	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
2R	12459195	2R_12459195_SNP [dm3] 2R_16571690_SNP [dm6]	T	A	8.337e^-4	0.95	UPSTREAM CG4927 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	12459235	2R_12459235_SNP [dm3] 2R_16571730_SNP [dm6]	A	T	8.337e^-4	0.95	UPSTREAM CG4927 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
X	5061503	X_5061503_SNP [dm3] X_5167470_SNP [dm6]	C	A	8.338e^-4	0.95	INTRON rg & 1 other
2L	19615205	2L_19615205_SNP [dm3] 2L_19615205_SNP [dm6]	T	C	8.348e^-4	0.95	INTRON Lar
3R	4954881	3R_4954881_SNP [dm3] 3R_9129159_SNP [dm6]	T	G	8.356e^-4	0.95	INTRON pum	TF binding site mE1_TFBS_Trl
2R	12419155	2R_12419155_SNP [dm3] 2R_16531650_SNP [dm6]	A	C	8.365e^-4	0.95	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12419170	2R_12419170_SNP [dm3] 2R_16531665_SNP [dm6]	A	G	8.365e^-4	0.95	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3056072	3L_3056072_SNP [dm3] 3L_3056072_SNP [dm6]	C	T	8.374e^-4	0.95	UTR_3_PRIME CG32486 DOWNSTREAM CG16753	TF binding site mE1_TFBS_inv
X	3329517	X_3329517_SNP [dm3] X_3435484_SNP [dm6]	C	A	8.390e^-4	0.95	SYNONYMOUS_CODING CG14269 INTRON CR44999 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18136344	3R_18136344_SNP [dm3] 3R_22310622_SNP [dm6]	G	C	8.391e^-4	0.95	UTR_3_PRIME CG34377
3R	18136364	3R_18136364_SNP [dm3] 3R_22310642_SNP [dm6]	G	A	8.391e^-4	0.95	UTR_3_PRIME CG34377
3R	18136413	3R_18136413_SNP [dm3] 3R_22310691_SNP [dm6]	T	G	8.391e^-4	0.95	UTR_3_PRIME CG34377
3R	18136427	3R_18136427_SNP [dm3] 3R_22310705_SNP [dm6]	G	T	8.391e^-4	0.95	UTR_3_PRIME CG34377
3R	18136442	3R_18136442_SNP [dm3] 3R_22310720_SNP [dm6]	G	A	8.391e^-4	0.95	UTR_3_PRIME CG34377
2L	5839918	2L_5839918_SNP [dm3] 2L_5839918_SNP [dm6]	C	T	8.403e^-4	0.95	INTRON TrissinR
X	20571900	X_20571900_INS [dm3] X_20700873_INS [dm6]	A	AA	8.405e^-4	0.95	INTERGENIC	regulatory region REDfly_CRMs
3R	25706963	3R_25706963_INS [dm3] 3R_29881241_INS [dm6]	A	AGA	8.413e^-4	0.95	INTRON CG31038
3R	25707343	3R_25707343_SNP [dm3] 3R_29881621_SNP [dm6]	C	T	8.413e^-4	0.95	INTRON CG31038
2L	19889996	2L_19889996_SNP [dm3] 2L_19889996_SNP [dm6]	C	G	8.427e^-4	0.95	DOWNSTREAM CG10481 INTRON sick

Missing results

By genomic position
Variant impact
Gene name

Ovarian_Atrophy phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results