DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.143e^-15)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.0794086

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.4947	0.0641
In_3R_Mo	5.5514	0.0623

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2294 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	14615289	3R_14615289_SNP [dm3] 3R_18789567_SNP [dm6]	G	A	2.733e^-8	0.036	INTRON CG7720	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4523264	3L_4523264_SNP [dm3] 3L_4523264_SNP [dm6]	T	C	3.864e^-8	0.036	INTRON Tie	TF binding site mE1_TFBS_inv
3R	12378896	3R_12378896_SNP [dm3] 3R_16553174_SNP [dm6]	G	C	7.728e^-8	0.041	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14117301	3R_14117301_SNP [dm3] 3R_18291579_SNP [dm6]	G	A	1.174e^-7	0.041	INTRON l_3_05822	TF binding site mE1_TFBS_chinmo
3L	4642439	3L_4642439_SNP [dm3] 3L_4642439_SNP [dm6]	T	C	1.269e^-7	0.041	UTR_3_PRIME axo INTRON axo
3R	12378878	3R_12378878_SNP [dm3] 3R_16553156_SNP [dm6]	A	C	1.308e^-7	0.041	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	899116	X_899116_SNP [dm3] X_1005083_SNP [dm6]	T	C	2.191e^-7	0.059	INTERGENIC
3L	12511947	3L_12511947_SNP [dm3] 3L_12518847_SNP [dm6]	A	C	1.099e^-6	0.192	SYNONYMOUS_CODING tral	TF binding site mE1_TFBS_HSA
3L	4642569	3L_4642569_SNP [dm3] 3L_4642569_SNP [dm6]	T	A	1.205e^-6	0.192	UTR_3_PRIME axo INTRON axo
2L	8044259	2L_8044259_SNP [dm3] 2L_8044259_SNP [dm6]	A	T	1.218e^-6	0.192	INTRON CG7466	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	21750825	3L_21750825_SNP [dm3] 3L_21757725_SNP [dm6]	G	A	1.220e^-6	0.192	NON_SYNONYMOUS_CODING CG14564 INTRON Syn1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9916372	2L_9916372_SNP [dm3] 2L_9916372_SNP [dm6]	C	T	1.233e^-6	0.192	SYNONYMOUS_CODING yip2 DOWNSTREAM CG5885
3R	23892129	3R_23892129_SNP [dm3] 3R_28066407_SNP [dm6]	C	A	1.382e^-6	0.192	INTRON CG34362
2L	7894640	2L_7894640_SNP [dm3] 2L_7894640_SNP [dm6]	A	C	1.433e^-6	0.192	NON_SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9916456	2L_9916456_SNP [dm3] 2L_9916456_SNP [dm6]	G	A	1.907e^-6	0.218	SYNONYMOUS_CODING yip2 DOWNSTREAM CG5885	TF binding site mE1_TFBS_chinmo
2L	8403335	2L_8403335_SNP [dm3] 2L_8403335_SNP [dm6]	G	T	1.977e^-6	0.218	UPSTREAM emb & 1 other DOWNSTREAM CR44991 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	18165023	3R_18165023_SNP [dm3] 3R_22339301_SNP [dm6]	G	A	1.997e^-6	0.218	INTRON CG5388
X	7645257	X_7645257_SNP [dm3] X_7751224_SNP [dm6]	A	G	2.296e^-6	0.218	INTERGENIC
2R	12244348	2R_12244348_SNP [dm3] 2R_16356843_SNP [dm6]	C	A	2.318e^-6	0.218	UPSTREAM CR43416 INTERGENIC
3L	8047950	3L_8047950_SNP [dm3] 3L_8054850_SNP [dm6]	G	A	2.329e^-6	0.218	NON_SYNONYMOUS_CODING bip1 DOWNSTREAM nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14098817	3L_14098817_SNP [dm3] 3L_14105717_SNP [dm6]	G	T	2.506e^-6	0.218	INTRON Sox21a	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	4642917	3L_4642917_SNP [dm3] 3L_4642917_SNP [dm6]	T	G	2.559e^-6	0.218	INTRON axo	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
X	17216280	X_17216280_SNP [dm3] X_17322247_SNP [dm6]	C	A	2.727e^-6	0.222	INTRON B-H2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_HSA
3L	4642656	3L_4642656_SNP [dm3] 3L_4642656_SNP [dm6]	A	G	3.378e^-6	0.262	SYNONYMOUS_CODING axo INTRON axo
3L	21696202	3L_21696202_SNP [dm3] 3L_21703102_SNP [dm6]	C	T	3.642e^-6	0.262	INTRON CG32447
X	7646092	X_7646092_SNP [dm3] X_7752059_SNP [dm6]	A	C	4.058e^-6	0.262	INTERGENIC
3L	5246814	3L_5246814_SNP [dm3] 3L_5253714_SNP [dm6]	T	A	4.076e^-6	0.262	INTRON shep
X	3443400	X_3443400_SNP [dm3] X_3549367_SNP [dm6]	A	T	4.136e^-6	0.262	INTRON CG32791
2R	18841344	2R_18841344_SNP [dm3] 2R_22953821_SNP [dm6]	T	A	4.206e^-6	0.262	UPSTREAM CR32835 INTERGENIC
2R	19203065	2R_19203065_SNP [dm3] 2R_23315542_SNP [dm6]	A	C	4.457e^-6	0.262	INTERGENIC
2R	12244327	2R_12244327_SNP [dm3] 2R_16356822_SNP [dm6]	A	T	4.481e^-6	0.262	UPSTREAM CR43416 INTERGENIC
3L	9300002	3L_9300002_SNP [dm3] 3L_9306902_SNP [dm6]	A	T	4.582e^-6	0.262	INTERGENIC
3R	4702424	3R_4702424_SNP [dm3] 3R_8876702_SNP [dm6]	A	T	4.633e^-6	0.262	INTRON pyd
2L	12371978	2L_12371978_SNP [dm3] 2L_12371978_SNP [dm6]	G	C	4.875e^-6	0.262	INTRON bru-2
3R	12379069	3R_12379069_SNP [dm3] 3R_16553347_SNP [dm6]	A	G	4.967e^-6	0.262	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
2L	7894835	2L_7894835_SNP [dm3] 2L_7894835_SNP [dm6]	C	T	5.031e^-6	0.262	SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8583365	2L_8583365_SNP [dm3] 2L_8583365_SNP [dm6]	G	C	5.463e^-6	0.277	INTRON Sema-1a
X	5870289	X_5870289_SNP [dm3] X_5976256_SNP [dm6]	T	C	5.891e^-6	0.278	INTRON Grip
2R	1407715	2R_1407715_SNP [dm3] 2R_5520210_SNP [dm6]	C	T	5.945e^-6	0.278	INTRON CG30438	transposable element FlyBase
X	7645258	X_7645258_SNP [dm3] X_7751225_SNP [dm6]	G	T	6.121e^-6	0.278	INTERGENIC
3L	1084790	3L_1084790_SNP [dm3] 3L_1084790_SNP [dm6]	A	C	6.467e^-6	0.278	INTRON bab1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	7433363	3L_7433363_SNP [dm3] 3L_7440263_SNP [dm6]	T	A	6.497e^-6	0.278	SYNONYMOUS_CODING sphinx2 UPSTREAM sphinx1 INTRON CG42458	TF binding site mE1_TFBS_sens
3L	21728219	3L_21728219_SNP [dm3] 3L_21735119_SNP [dm6]	G	A	6.529e^-6	0.278	UPSTREAM CR43888 DOWNSTREAM CG14573 INTERGENIC
X	7645286	X_7645286_SNP [dm3] X_7751253_SNP [dm6]	T	G	6.568e^-6	0.278	INTERGENIC
3L	7524443	3L_7524443_MNP [dm3] 3L_7531343_MNP [dm6]	TCA	AAT	6.884e^-6	0.278	INTRON lqf
3L	4003814	3L_4003814_SNP [dm3] 3L_4003814_SNP [dm6]	T	A	7.109e^-6	0.278	NON_SYNONYMOUS_CODING CG14985	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14394135	X_14394135_INS [dm3] X_14500102_INS [dm6]	T	TTCATTATTTT...	7.164e^-6	0.278	INTERGENIC
3L	7524402	3L_7524402_SNP [dm3] 3L_7531302_SNP [dm6]	C	T	7.352e^-6	0.278	INTRON lqf
2L	7016878	2L_7016878_SNP [dm3] 2L_7016878_SNP [dm6]	C	T	7.504e^-6	0.278	NON_SYNONYMOUS_CODING ade3	TF binding site mE1_TFBS_chinmo
2R	17621234	2R_17621234_SNP [dm3] 2R_21733729_SNP [dm6]	C	T	7.786e^-6	0.278	INTERGENIC
2L	8044273	2L_8044273_SNP [dm3] 2L_8044273_SNP [dm6]	C	T	7.850e^-6	0.278	INTRON CG7466	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	1432979	2L_1432979_SNP [dm3] 2L_1432979_SNP [dm6]	C	T	7.870e^-6	0.278	DOWNSTREAM snRNA:U3:22A INTERGENIC
2R	19739627	2R_19739627_SNP [dm3] 2R_23852104_SNP [dm6]	A	C	7.951e^-6	0.278	NON_SYNONYMOUS_CODING gbb UPSTREAM ytr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17717608	3R_17717608_SNP [dm3] 3R_21891886_SNP [dm6]	A	T	8.055e^-6	0.278	INTRON CG6678	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19346861	X_19346861_SNP [dm3] X_19452828_SNP [dm6]	G	A	8.223e^-6	0.278	INTRON kek5	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21696960	3L_21696960_SNP [dm3] 3L_21703860_SNP [dm6]	G	C	8.396e^-6	0.278	INTRON CG32447	TF binding site mE1_TFBS_HSA
3R	9333654	3R_9333654_SNP [dm3] 3R_13507932_SNP [dm6]	C	A	8.587e^-6	0.278	INTERGENIC
3R	10596377	3R_10596377_SNP [dm3] 3R_14770655_SNP [dm6]	T	C	8.642e^-6	0.278	INTRON jvl
3L	21695646	3L_21695646_SNP [dm3] 3L_21702546_SNP [dm6]	A	C	8.981e^-6	0.278	INTRON CG32447
3R	16751627	3R_16751627_SNP [dm3] 3R_20925905_SNP [dm6]	C	G	9.024e^-6	0.278	INTRON CG31191 & 1 other
3R	10159077	3R_10159077_SNP [dm3] 3R_14333355_SNP [dm6]	A	T	9.169e^-6	0.278	INTRON NK7.1
2R	5287568	2R_5287568_DEL [dm3] 2R_9400063_DEL [dm6]	CAC	C	9.187e^-6	0.278	UTR_5_PRIME CG33774 DOWNSTREAM wun & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
2L	9259402	2L_9259402_SNP [dm3] 2L_9259402_SNP [dm6]	C	A	9.485e^-6	0.282	UTR_5_PRIME Ggamma30A INTRON Ggamma30A
3R	3164974	3R_3164974_SNP [dm3] 3R_7339252_SNP [dm6]	C	T	9.735e^-6	0.285	INTERGENIC	TF binding site mE1_TFBS_cad
2L	5461503	2L_5461503_SNP [dm3] 2L_5461503_SNP [dm6]	C	A	1.066e^-5	0.308	UPSTREAM mid INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_Ubx
X	12676864	X_12676864_SNP [dm3] X_12782831_SNP [dm6]	G	A	1.157e^-5	0.329	INTRON CG32647
3L	7524438	3L_7524438_SNP [dm3] 3L_7531338_SNP [dm6]	A	C	1.190e^-5	0.329	INTRON lqf
2R	11765664	2R_11765664_SNP [dm3] 2R_15878159_SNP [dm6]	T	A	1.192e^-5	0.329	INTRON sli
2L	3379601	2L_3379601_SNP [dm3] 2L_3379601_SNP [dm6]	G	A	1.219e^-5	0.331	INTERGENIC
X	917107	X_917107_SNP [dm3] X_1023074_SNP [dm6]	G	A	1.244e^-5	0.333	INTRON su_w[a]_ & 2 others
2R	12246141	2R_12246141_SNP [dm3] 2R_16358636_SNP [dm6]	C	T	1.282e^-5	0.334	DOWNSTREAM CR45322 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3L	7524344	3L_7524344_SNP [dm3] 3L_7531244_SNP [dm6]	A	T	1.286e^-5	0.334	INTRON lqf
X	21297532	X_21297532_DEL [dm3] X_21426505_DEL [dm6]	TGTTGCGTAT	T	1.322e^-5	0.334	INTRON CG42343
3R	18867947	3R_18867947_SNP [dm3] 3R_23042225_SNP [dm6]	C	T	1.336e^-5	0.334	UPSTREAM CG13838 DOWNSTREAM CR44226 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	12094287	2R_12094287_SNP [dm3] 2R_16206782_SNP [dm6]	C	A	1.347e^-5	0.334	UPSTREAM mrj DOWNSTREAM tRNA:CR30237 INTRON mrj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	11284969	3R_11284969_SNP [dm3] 3R_15459247_SNP [dm6]	C	T	1.355e^-5	0.334	INTRON AdamTS-A
3R	16528826	3R_16528826_SNP [dm3] 3R_20703104_SNP [dm6]	C	G	1.379e^-5	0.336	INTRON Oamb
2R	12246163	2R_12246163_SNP [dm3] 2R_16358658_SNP [dm6]	A	C	1.408e^-5	0.339	DOWNSTREAM CR45322 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2L	3385183	2L_3385183_SNP [dm3] 2L_3385183_SNP [dm6]	A	G	1.452e^-5	0.345	INTERGENIC
3L	4642730	3L_4642730_SNP [dm3] 3L_4642730_SNP [dm6]	C	G	1.482e^-5	0.345	NON_SYNONYMOUS_CODING axo	TF binding site mE1_TFBS_chinmo
X	898466	X_898466_SNP [dm3] X_1004433_SNP [dm6]	A	G	1.501e^-5	0.345	INTERGENIC
3L	12942220	3L_12942220_SNP [dm3] 3L_12949120_SNP [dm6]	C	A	1.506e^-5	0.345	INTERGENIC
2R	19739712	2R_19739712_SNP [dm3] 2R_23852189_SNP [dm6]	G	A	1.554e^-5	0.346	SYNONYMOUS_CODING gbb UPSTREAM ytr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12246176	2R_12246176_DEL [dm3] 2R_16358671_DEL [dm6]	AA	A	1.556e^-5	0.346	DOWNSTREAM CR45322 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2L	3385215	2L_3385215_INS [dm3] 2L_3385215_INS [dm6]	GGC	TTTCACAG	1.566e^-5	0.346	INTERGENIC
2L	12407738	2L_12407738_SNP [dm3] 2L_12407738_SNP [dm6]	T	A	1.586e^-5	0.346	SPLICE_SITE_REGION vir-1 INTRON vir-1
X	19722384	X_19722384_INS [dm3] X_19828351_INS [dm6]	A	ACGGTCAGGA	1.627e^-5	0.351	INTERGENIC
2R	19046914	2R_19046914_SNP [dm3] 2R_23159391_SNP [dm6]	G	A	1.666e^-5	0.355	SYNONYMOUS_CODING CG9899
3L	7432891	3L_7432891_INS [dm3] 3L_7439791_INS [dm6]	T	TGAAT	1.734e^-5	0.36	UTR_3_PRIME sphinx2 UPSTREAM sphinx1 INTRON CG42458
3L	21708318	3L_21708318_SNP [dm3] 3L_21715218_SNP [dm6]	G	T	1.771e^-5	0.36	INTERGENIC
2L	5670982	2L_5670982_SNP [dm3] 2L_5670982_SNP [dm6]	T	C	1.776e^-5	0.36	DOWNSTREAM Hsp60C INTERGENIC	TF binding site mE1_TFBS_chinmo
X	5870568	X_5870568_SNP [dm3] X_5976535_SNP [dm6]	C	T	1.783e^-5	0.36	INTRON Grip
2R	11765639	2R_11765639_SNP [dm3] 2R_15878134_SNP [dm6]	A	G	1.785e^-5	0.36	INTRON sli
2R	9290446	2R_9290446_SNP [dm3] 2R_13402941_SNP [dm6]	C	T	1.810e^-5	0.361	INTERGENIC
2L	3374498	2L_3374498_SNP [dm3] 2L_3374498_SNP [dm6]	C	T	1.854e^-5	0.363	SYNONYMOUS_CODING CG15412	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8051124	2L_8051124_SNP [dm3] 2L_8051124_SNP [dm6]	G	C	1.858e^-5	0.363	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12489802	3L_12489802_SNP [dm3] 3L_12496702_SNP [dm6]	G	A	1.922e^-5	0.372	INTRON CG10657
3R	16703869	3R_16703869_SNP [dm3] 3R_20878147_SNP [dm6]	G	A	1.975e^-5	0.373	SYNONYMOUS_CODING TotZ DOWNSTREAM CR44048
3R	23947861	3R_23947861_SNP [dm3] 3R_28122139_SNP [dm6]	T	C	1.991e^-5	0.373	INTERGENIC
3R	8488327	3R_8488327_SNP [dm3] 3R_12662605_SNP [dm6]	G	C	2.000e^-5	0.373	UPSTREAM CG14395 & 1 other INTERGENIC
2R	9349785	2R_9349785_SNP [dm3] 2R_13462280_SNP [dm6]	T	C	2.081e^-5	0.373	INTRON arr	TF binding site mE1_TFBS_chinmo
3L	12489801	3L_12489801_SNP [dm3] 3L_12496701_SNP [dm6]	A	C	2.088e^-5	0.373	INTRON CG10657
3L	7524376	3L_7524376_SNP [dm3] 3L_7531276_SNP [dm6]	T	C	2.090e^-5	0.373	INTRON lqf
3L	5794790	3L_5794790_SNP [dm3] 3L_5801690_SNP [dm6]	G	A	2.097e^-5	0.373	INTRON S6k	TF binding site BDTNP1_TFBS_z
X	900848	X_900848_SNP [dm3] X_1006815_SNP [dm6]	T	C	2.118e^-5	0.373	INTERGENIC
3R	23947777	3R_23947777_SNP [dm3] 3R_28122055_SNP [dm6]	T	A	2.134e^-5	0.373	INTERGENIC
2L	7966846	2L_7966846_SNP [dm3] 2L_7966846_SNP [dm6]	G	A	2.138e^-5	0.373	INTRON Snoo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6557798	2L_6557798_INS [dm3] 2L_6557798_INS [dm6]	T	TT	2.159e^-5	0.373	UPSTREAM CoVb & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	13198724	2L_13198724_SNP [dm3] 2L_13198724_SNP [dm6]	G	T	2.166e^-5	0.373	SYNONYMOUS_CODING CG16972	TF binding site mE1_TFBS_cad
2R	12244282	2R_12244282_DEL [dm3] 2R_16356777_DEL [dm6]	AAAA	A	2.194e^-5	0.374	UPSTREAM CR43416 INTERGENIC
2L	8403143	2L_8403143_SNP [dm3] 2L_8403143_SNP [dm6]	G	T	2.261e^-5	0.38	UTR_5_PRIME fy UPSTREAM emb & 1 other DOWNSTREAM CR44991	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17515696	2R_17515696_SNP [dm3] 2R_21628191_SNP [dm6]	C	T	2.270e^-5	0.38	SYNONYMOUS_CODING mahj	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4524405	3L_4524405_SNP [dm3] 3L_4524405_SNP [dm6]	A	C	2.321e^-5	0.38	NON_SYNONYMOUS_CODING Tie	TF binding site mE1_TFBS_cad
2R	4937932	2R_4937932_SNP [dm3] 2R_9050427_SNP [dm6]	A	T	2.327e^-5	0.38	INTRON CG13743	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9521031	X_9521031_SNP [dm3] X_9626998_SNP [dm6]	C	T	2.349e^-5	0.38	UTR_3_PRIME l_1_G0232
3R	22213183	3R_22213183_SNP [dm3] 3R_26387461_SNP [dm6]	G	A	2.350e^-5	0.38	INTERGENIC
X	5903701	X_5903701_SNP [dm3] X_6009668_SNP [dm6]	A	C	2.383e^-5	0.382	INTRON mab-21
3L	8729889	3L_8729889_SNP [dm3] 3L_8736789_SNP [dm6]	A	G	2.420e^-5	0.382	UTR_3_PRIME Prm INTRON Prm	TF binding site mE1_TFBS_inv
2R	9763167	2R_9763167_SNP [dm3] 2R_13875662_SNP [dm6]	A	G	2.422e^-5	0.382	SYNONYMOUS_CODING shot	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4193852	2L_4193852_INS [dm3] 2L_4193852_INS [dm6]	A	ACAAA	2.504e^-5	0.387	INTRON CG3714	TF binding site mE1_TFBS_h mE1_TFBS_HSA
X	17981291	X_17981291_SNP [dm3] X_18087258_SNP [dm6]	G	A	2.507e^-5	0.387	SYNONYMOUS_CODING dik INTRON CG7536	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18799897	2R_18799897_SNP [dm3] 2R_22912374_SNP [dm6]	T	C	2.519e^-5	0.387	INTRON nahoda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	16625256	2R_16625256_SNP [dm3] 2R_20737751_SNP [dm6]	T	C	2.593e^-5	0.394	INTRON dpr
3R	10180429	3R_10180429_SNP [dm3] 3R_14354707_SNP [dm6]	G	A	2.609e^-5	0.394	INTRON NK7.1
3R	23947881	3R_23947881_SNP [dm3] 3R_28122159_SNP [dm6]	A	C	2.624e^-5	0.394	INTERGENIC
3L	4596324	3L_4596324_SNP [dm3] 3L_4596324_SNP [dm6]	A	G	2.646e^-5	0.394	INTRON Src64B	TF binding site mE1_TFBS_cad
2R	12244118	2R_12244118_SNP [dm3] 2R_16356613_SNP [dm6]	G	C	2.692e^-5	0.398	INTERGENIC
2R	12244444	2R_12244444_SNP [dm3] 2R_16356939_SNP [dm6]	A	T	2.753e^-5	0.403	UPSTREAM CR43416 INTERGENIC
3R	23909367	3R_23909367_SNP [dm3] 3R_28083645_SNP [dm6]	A	T	2.791e^-5	0.406	INTRON CG34362
3R	8488333	3R_8488333_SNP [dm3] 3R_12662611_SNP [dm6]	A	C	2.859e^-5	0.412	UPSTREAM CG14395 & 1 other INTERGENIC
3L	7524544	3L_7524544_SNP [dm3] 3L_7531444_SNP [dm6]	A	T	2.877e^-5	0.412	UPSTREAM lqf INTRON lqf
3L	8693129	3L_8693129_SNP [dm3] 3L_8700029_SNP [dm6]	G	A	2.950e^-5	0.417	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	4383188	2L_4383188_SNP [dm3] 2L_4383188_SNP [dm6]	G	A	2.997e^-5	0.417	SYNONYMOUS_CODING CG3338 UPSTREAM CG17612	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	16686500	3R_16686500_SNP [dm3] 3R_20860778_SNP [dm6]	C	A	3.003e^-5	0.417	UTR_3_PRIME CG3822 UPSTREAM Ir93a
X	21300967	X_21300967_SNP [dm3] X_21429940_SNP [dm6]	T	G	3.080e^-5	0.417	UPSTREAM CG10918 INTRON CG42343	transposable element FlyBase
2L	12379115	2L_12379115_SNP [dm3] 2L_12379115_SNP [dm6]	G	A	3.087e^-5	0.417	INTRON bru-2
3R	22213181	3R_22213181_SNP [dm3] 3R_26387459_SNP [dm6]	T	C	3.099e^-5	0.417	INTERGENIC
3L	21725671	3L_21725671_SNP [dm3] 3L_21732571_SNP [dm6]	G	T	3.103e^-5	0.417	DOWNSTREAM CG14568 INTERGENIC	transposable element FlyBase
2L	2185621	2L_2185621_SNP [dm3] 2L_2185621_SNP [dm6]	A	G	3.133e^-5	0.417	DOWNSTREAM CR43751 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
3R	10748898	3R_10748898_SNP [dm3] 3R_14923176_SNP [dm6]	C	T	3.142e^-5	0.417	DOWNSTREAM CR45598 & 1 other INTERGENIC
2R	18799888	2R_18799888_SNP [dm3] 2R_22912365_SNP [dm6]	T	G	3.159e^-5	0.417	INTRON nahoda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	19191208	2R_19191208_INS [dm3] 2R_23303685_INS [dm6]	T	TT	3.160e^-5	0.417	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	16987054	3R_16987054_SNP [dm3] 3R_21161332_SNP [dm6]	G	C	3.286e^-5	0.427	UPSTREAM CG10824 INTRON SNF4Agamma
2R	20813060	2R_20813060_SNP [dm3] 2R_24925537_SNP [dm6]	A	G	3.314e^-5	0.427	INTRON pain
3R	16750610	3R_16750610_SNP [dm3] 3R_20924888_SNP [dm6]	G	A	3.343e^-5	0.427	INTRON CG31191 & 1 other
3R	23887938	3R_23887938_INS [dm3] 3R_28062216_INS [dm6]	G	GGTGCTG	3.370e^-5	0.427	INTRON CG34362
X	14240849	X_14240849_SNP [dm3] X_14346816_SNP [dm6]	G	T	3.392e^-5	0.427	INTRON dpr8	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22265905	3R_22265905_SNP [dm3] 3R_26440183_SNP [dm6]	G	C	3.395e^-5	0.427	UPSTREAM tx INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2R	5287562	2R_5287562_SNP [dm3] 2R_9400057_SNP [dm6]	C	G	3.416e^-5	0.427	UTR_5_PRIME CG33774 DOWNSTREAM wun & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
2L	6032906	2L_6032906_SNP [dm3] 2L_6032906_SNP [dm6]	A	G	3.417e^-5	0.427	SYNONYMOUS_CODING CG9109
3L	19447705	3L_19447705_SNP [dm3] 3L_19454605_SNP [dm6]	G	A	3.445e^-5	0.428	UPSTREAM CR45434 INTERGENIC	TF binding site mE1_TFBS_inv
3L	12511956	3L_12511956_SNP [dm3] 3L_12518856_SNP [dm6]	A	G	3.485e^-5	0.429	SYNONYMOUS_CODING tral	TF binding site mE1_TFBS_HSA
X	920356	X_920356_DEL [dm3] X_1026323_DEL [dm6]	AA	A	3.500e^-5	0.429	UPSTREAM CG3021 INTRON su_w[a]_ & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	13828976	X_13828976_SNP [dm3] X_13934943_SNP [dm6]	A	C	3.537e^-5	0.43	INTRON mamo
2L	6347909	2L_6347909_SNP [dm3] 2L_6347909_SNP [dm6]	G	A	3.571e^-5	0.43	SYNONYMOUS_CODING CG9497
3L	8796784	3L_8796784_SNP [dm3] 3L_8803684_SNP [dm6]	G	T	3.581e^-5	0.43	NON_SYNONYMOUS_CODING CG32023 DOWNSTREAM CG34426
X	19872506	X_19872506_SNP [dm3] X_19978473_SNP [dm6]	A	G	3.617e^-5	0.43	INTERGENIC
2L	6032900	2L_6032900_SNP [dm3] 2L_6032900_SNP [dm6]	G	A	3.633e^-5	0.43	SYNONYMOUS_CODING CG9109
2L	6813795	2L_6813795_SNP [dm3] 2L_6813795_SNP [dm6]	A	C	3.682e^-5	0.43	DOWNSTREAM CR44081 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5461179	2L_5461179_SNP [dm3] 2L_5461179_SNP [dm6]	C	T	3.712e^-5	0.43	UPSTREAM mid INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_Ubx
2L	22915205	2L_22915205_SNP [dm3] 2L_23022473_SNP [dm6]	A	T	3.782e^-5	0.43	INTRON Cht3
3L	8050412	3L_8050412_SNP [dm3] 3L_8057312_SNP [dm6]	G	A	3.816e^-5	0.43	UPSTREAM bip1 INTRON bip1	TF binding site mE1_TFBS_Trl
3L	8796674	3L_8796674_SNP [dm3] 3L_8803574_SNP [dm6]	A	G	3.817e^-5	0.43	UTR_3_PRIME CG34426 DOWNSTREAM CG32023
2R	16911597	2R_16911597_SNP [dm3] 2R_21024092_SNP [dm6]	C	T	3.846e^-5	0.43	SYNONYMOUS_CODING RIC-3 UTR_3_PRIME RIC-3 UPSTREAM CG9350
3L	4642709	3L_4642709_SNP [dm3] 3L_4642709_SNP [dm6]	T	C	3.875e^-5	0.43	NON_SYNONYMOUS_CODING axo	TF binding site mE1_TFBS_chinmo
3L	21709099	3L_21709099_SNP [dm3] 3L_21715999_SNP [dm6]	G	C	3.888e^-5	0.43	INTERGENIC
2R	11274837	2R_11274837_DEL [dm3] 2R_15387332_DEL [dm6]	AGAA	A	3.897e^-5	0.43	UTR_3_PRIME SRPK DOWNSTREAM SRPK
2R	9954470	2R_9954470_SNP [dm3] 2R_14066965_SNP [dm6]	T	A	3.914e^-5	0.43	INTRON Prosap
3R	14425316	3R_14425316_SNP [dm3] 3R_18599594_SNP [dm6]	T	C	3.916e^-5	0.43	SYNONYMOUS_CODING CG14305 INTRON qin & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19739681	2R_19739681_SNP [dm3] 2R_23852158_SNP [dm6]	G	C	3.951e^-5	0.43	NON_SYNONYMOUS_CODING gbb UPSTREAM ytr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	3443406	X_3443406_SNP [dm3] X_3549373_SNP [dm6]	A	T	3.986e^-5	0.43	INTRON CG32791
3R	18141756	3R_18141756_SNP [dm3] 3R_22316034_SNP [dm6]	G	C	3.987e^-5	0.43	INTRON CG34377
3L	9962395	3L_9962395_SNP [dm3] 3L_9969295_SNP [dm6]	A	G	4.038e^-5	0.43	SYNONYMOUS_CODING Nc UPSTREAM CG6685	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h
2L	5713961	2L_5713961_SNP [dm3] 2L_5713961_SNP [dm6]	C	T	4.046e^-5	0.43	DOWNSTREAM CG7236 INTERGENIC
2L	9259401	2L_9259401_SNP [dm3] 2L_9259401_SNP [dm6]	A	C	4.068e^-5	0.43	UTR_5_PRIME Ggamma30A INTRON Ggamma30A
3L	10668472	3L_10668472_SNP [dm3] 3L_10675372_SNP [dm6]	G	A	4.114e^-5	0.43	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	8488258	3R_8488258_SNP [dm3] 3R_12662536_SNP [dm6]	C	T	4.117e^-5	0.43	UPSTREAM CG14395 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
X	7645394	X_7645394_SNP [dm3] X_7751361_SNP [dm6]	A	G	4.178e^-5	0.43	INTERGENIC
X	7645407	X_7645407_SNP [dm3] X_7751374_SNP [dm6]	A	T	4.178e^-5	0.43	INTERGENIC
X	7645419	X_7645419_SNP [dm3] X_7751386_SNP [dm6]	T	C	4.178e^-5	0.43	INTERGENIC
X	7646091	X_7646091_SNP [dm3] X_7752058_SNP [dm6]	A	C	4.178e^-5	0.43	INTERGENIC
X	7646211	X_7646211_SNP [dm3] X_7752178_SNP [dm6]	A	G	4.178e^-5	0.43	INTERGENIC
X	17183899	X_17183899_SNP [dm3] X_17289866_SNP [dm6]	T	G	4.214e^-5	0.432	INTRON CG5445 & 1 other
3R	16500145	3R_16500145_SNP [dm3] 3R_20674423_SNP [dm6]	G	T	4.280e^-5	0.434	INTERGENIC
3R	16500151	3R_16500151_SNP [dm3] 3R_20674429_SNP [dm6]	A	G	4.280e^-5	0.434	INTERGENIC
3L	2690664	3L_2690664_SNP [dm3] 3L_2690664_SNP [dm6]	A	G	4.334e^-5	0.436	INTRON Fife
2L	22349332	2L_22349332_SNP [dm3] 2L_22349332_SNP [dm6]	A	T	4.354e^-5	0.436	INTRON CG17018	transposable element FlyBase
2L	4852155	2L_4852155_SNP [dm3] 2L_4852155_SNP [dm6]	T	G	4.407e^-5	0.436	SYNONYMOUS_CODING Mon1 UPSTREAM pog	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	4352388	3L_4352388_SNP [dm3] 3L_4352388_SNP [dm6]	C	T	4.513e^-5	0.436	INTRON Cip4
X	7645211	X_7645211_SNP [dm3] X_7751178_SNP [dm6]	T	C	4.530e^-5	0.436	INTERGENIC
3L	21763837	3L_21763837_SNP [dm3] 3L_21770737_SNP [dm6]	A	G	4.563e^-5	0.436	UTR_3_PRIME CG7370 UPSTREAM Syn1 INTRON CG42689
2R	9349852	2R_9349852_SNP [dm3] 2R_13462347_SNP [dm6]	C	G	4.584e^-5	0.436	INTRON arr	TF binding site mE1_TFBS_chinmo
2L	12264616	2L_12264616_SNP [dm3] 2L_12264616_SNP [dm6]	T	C	4.604e^-5	0.436	INTRON aret
X	7645300	X_7645300_SNP [dm3] X_7751267_SNP [dm6]	G	C	4.605e^-5	0.436	INTERGENIC
X	7645305	X_7645305_SNP [dm3] X_7751272_SNP [dm6]	T	G	4.605e^-5	0.436	INTERGENIC
3L	20833275	3L_20833275_SNP [dm3] 3L_20840175_SNP [dm6]	A	G	4.613e^-5	0.436	INTRON CSN3
X	7645537	X_7645537_SNP [dm3] X_7751504_SNP [dm6]	C	T	4.639e^-5	0.436	INTERGENIC
2R	9290417	2R_9290417_SNP [dm3] 2R_13402912_SNP [dm6]	C	T	4.648e^-5	0.436	INTERGENIC
X	14721623	X_14721623_SNP [dm3] X_14827590_SNP [dm6]	A	G	4.687e^-5	0.436	UTR_3_PRIME CG14408	TF binding site BDTNP1_TFBS_dl
3L	2135049	3L_2135049_SNP [dm3] 3L_2135049_SNP [dm6]	T	C	4.715e^-5	0.436	SYNONYMOUS_CODING zormin	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4832870	2L_4832870_SNP [dm3] 2L_4832870_SNP [dm6]	C	A	4.790e^-5	0.436	SYNONYMOUS_CODING Ir25a
X	6884006	X_6884006_SNP [dm3] X_6989973_SNP [dm6]	A	G	4.826e^-5	0.436	INTRON ogre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	6884034	X_6884034_SNP [dm3] X_6990001_SNP [dm6]	C	T	4.826e^-5	0.436	INTRON ogre	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Trl
X	10233083	X_10233083_SNP [dm3] X_10339050_SNP [dm6]	T	C	4.828e^-5	0.436	INTRON CG43740
2L	22910988	2L_22910988_SNP [dm3] 2L_23018256_SNP [dm6]	C	T	4.828e^-5	0.436	INTRON Cht3
3L	10357252	3L_10357252_SNP [dm3] 3L_10364152_SNP [dm6]	A	C	4.837e^-5	0.436	UPSTREAM CR44327 EXON CR44327	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3994062	2L_3994062_DEL [dm3] 2L_3994062_DEL [dm6]	TA	T	4.858e^-5	0.436	INTERGENIC
2R	12364970	2R_12364970_SNP [dm3] 2R_16477465_SNP [dm6]	A	T	4.876e^-5	0.436	INTERGENIC
X	7645339	X_7645339_SNP [dm3] X_7751306_SNP [dm6]	A	G	4.883e^-5	0.436	INTERGENIC
X	7645320	X_7645320_SNP [dm3] X_7751287_SNP [dm6]	G	A	4.885e^-5	0.436	INTERGENIC
X	7645301	X_7645301_SNP [dm3] X_7751268_SNP [dm6]	C	A	4.932e^-5	0.437	INTERGENIC
3L	12275314	3L_12275314_SNP [dm3] 3L_12282214_SNP [dm6]	C	A	4.957e^-5	0.437	DOWNSTREAM CG10426 INTERGENIC
3L	17670908	3L_17670908_SNP [dm3] 3L_17677808_SNP [dm6]	C	T	4.990e^-5	0.437	INTRON CG34251
2L	12264840	2L_12264840_SNP [dm3] 2L_12264840_SNP [dm6]	T	C	4.991e^-5	0.437	INTRON aret
2L	1621617	2L_1621617_DEL [dm3] 2L_1621617_DEL [dm6]	TT	T	5.036e^-5	0.439	EXON CR44603
3L	4077031	3L_4077031_SNP [dm3] 3L_4077031_SNP [dm6]	A	G	5.052e^-5	0.439	INTRON Gad1
3R	17723133	3R_17723133_SNP [dm3] 3R_21897411_SNP [dm6]	C	A	5.171e^-5	0.442	INTRON CG6678
2L	15274416	2L_15274416_SNP [dm3] 2L_15274416_SNP [dm6]	A	G	5.187e^-5	0.442	INTRON UK114	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	1005610	2R_1005610_SNP [dm3] 2R_5118105_SNP [dm6]	A	C	5.268e^-5	0.442	INTRON gus	transposable element FlyBase
2R	16622109	2R_16622109_SNP [dm3] 2R_20734604_SNP [dm6]	T	G	5.277e^-5	0.442	INTRON dpr
X	10064284	X_10064284_DEL [dm3] X_10170251_DEL [dm6]	AA	G	5.300e^-5	0.442	INTRON CG43902 & 1 other	TF binding site BDTNP1_TFBS_dl
X	5870274	X_5870274_SNP [dm3] X_5976241_SNP [dm6]	C	T	5.307e^-5	0.442	INTRON Grip
X	2493261	X_2493261_SNP [dm3] X_2599228_SNP [dm6]	G	T	5.312e^-5	0.442	UTR_3_PRIME Klp3A DOWNSTREAM Klp3A & 1 other
3L	7432708	3L_7432708_SNP [dm3] 3L_7439608_SNP [dm6]	C	T	5.337e^-5	0.442	UPSTREAM sphinx1 DOWNSTREAM sphinx2 INTRON CG42458
3L	21720623	3L_21720623_SNP [dm3] 3L_21727523_SNP [dm6]	G	A	5.361e^-5	0.442	INTRON CG11247	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12364965	2R_12364965_SNP [dm3] 2R_16477460_SNP [dm6]	G	A	5.383e^-5	0.442	INTERGENIC
2R	12364969	2R_12364969_SNP [dm3] 2R_16477464_SNP [dm6]	G	A	5.383e^-5	0.442	INTERGENIC
3L	21727794	3L_21727794_SNP [dm3] 3L_21734694_SNP [dm6]	G	T	5.403e^-5	0.442	NON_SYNONYMOUS_CODING CG14573	TF binding site mE1_TFBS_cad
2L	6347834	2L_6347834_SNP [dm3] 2L_6347834_SNP [dm6]	T	A	5.416e^-5	0.442	SYNONYMOUS_CODING CG9497
3R	7651238	3R_7651238_SNP [dm3] 3R_11825516_SNP [dm6]	C	T	5.420e^-5	0.442	INTRON CG6959
X	7645318	X_7645318_SNP [dm3] X_7751285_SNP [dm6]	G	A	5.442e^-5	0.442	INTERGENIC
X	5450825	X_5450825_SNP [dm3] X_5556792_SNP [dm6]	G	C	5.464e^-5	0.442	INTRON Vsx2
3R	25021079	3R_25021079_SNP [dm3] 3R_29195357_SNP [dm6]	G	A	5.492e^-5	0.442	UPSTREAM CG14509 INTERGENIC
2L	4400198	2L_4400198_SNP [dm3] 2L_4400198_SNP [dm6]	G	C	5.618e^-5	0.45	UTR_3_PRIME l_2_k05819 UPSTREAM CG33003 DOWNSTREAM l_2_k05819
3R	16689852	3R_16689852_SNP [dm3] 3R_20864130_SNP [dm6]	A	T	5.651e^-5	0.451	INTRON CG3822	TF binding site mE1_TFBS_chinmo
X	19027558	X_19027558_SNP [dm3] X_19133525_SNP [dm6]	A	C	5.723e^-5	0.455	EXON CR45711
3L	20856998	3L_20856998_SNP [dm3] 3L_20863898_SNP [dm6]	C	A	5.872e^-5	0.465	INTRON CG32432
2L	1238545	2L_1238545_SNP [dm3] 2L_1238545_SNP [dm6]	G	T	5.939e^-5	0.468	INTERGENIC
3L	10930628	3L_10930628_SNP [dm3] 3L_10937528_SNP [dm6]	A	G	5.981e^-5	0.469	INTERGENIC
2L	8274418	2L_8274418_SNP [dm3] 2L_8274418_SNP [dm6]	G	A	6.096e^-5	0.475	UPSTREAM Btk29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16626740	2R_16626740_SNP [dm3] 2R_20739235_SNP [dm6]	G	A	6.103e^-5	0.475	INTRON dpr
2L	3669182	2L_3669182_SNP [dm3] 2L_3669182_SNP [dm6]	G	A	6.139e^-5	0.475	UPSTREAM Sfp24Ba & 1 other DOWNSTREAM Sfp24Bb & 1 other INTRON CG34340
3L	21712785	3L_21712785_SNP [dm3] 3L_21719685_SNP [dm6]	G	A	6.153e^-5	0.475	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	17985243	X_17985243_SNP [dm3] X_18091210_SNP [dm6]	C	A	6.219e^-5	0.478	UPSTREAM scu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7738897	3L_7738897_SNP [dm3] 3L_7745797_SNP [dm6]	A	G	6.327e^-5	0.48	INTRON CG32373
2R	16500624	2R_16500624_SNP [dm3] 2R_20613119_SNP [dm6]	C	G	6.330e^-5	0.48	SYNONYMOUS_CODING Hil
3L	21641896	3L_21641896_SNP [dm3] 3L_21648796_SNP [dm6]	A	T	6.345e^-5	0.48	INTRON CG43980
2L	8051125	2L_8051125_SNP [dm3] 2L_8051125_SNP [dm6]	T	C	6.361e^-5	0.48	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9224847	X_9224847_SNP [dm3] X_9330814_SNP [dm6]	G	A	6.393e^-5	0.48	UPSTREAM CG34450 DOWNSTREAM CG34449 INTRON CG34449
X	7866398	X_7866398_SNP [dm3] X_7972365_SNP [dm6]	C	T	6.398e^-5	0.48	INTRON sn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17982577	X_17982577_SNP [dm3] X_18088544_SNP [dm6]	T	C	6.502e^-5	0.486	UPSTREAM CG7536 DOWNSTREAM CG7206 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	10874197	2R_10874197_SNP [dm3] 2R_14986692_SNP [dm6]	G	A	6.589e^-5	0.49	DOWNSTREAM CG7639 INTRON pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3L	7425051	3L_7425051_SNP [dm3] 3L_7431951_SNP [dm6]	G	A	6.658e^-5	0.49	INTRON CG42458
X	7680876	X_7680876_SNP [dm3] X_7786843_SNP [dm6]	A	G	6.724e^-5	0.49	INTERGENIC
2L	4852146	2L_4852146_SNP [dm3] 2L_4852146_SNP [dm6]	G	A	6.739e^-5	0.49	SYNONYMOUS_CODING Mon1 UPSTREAM pog	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	18988568	X_18988568_SNP [dm3] X_19094535_SNP [dm6]	C	T	6.743e^-5	0.49	INTERGENIC
2L	13118198	2L_13118198_SNP [dm3] 2L_13118198_SNP [dm6]	C	A	6.751e^-5	0.49	DOWNSTREAM CR44198 INTERGENIC
X	13363630	X_13363630_SNP [dm3] X_13469597_SNP [dm6]	G	A	6.782e^-5	0.49	INTRON Neto
3L	4544964	3L_4544964_SNP [dm3] 3L_4544964_SNP [dm6]	T	A	6.812e^-5	0.49	INTRON CG11357	TF binding site BDTNP1_TFBS_twi
X	11751675	X_11751675_SNP [dm3] X_11857642_SNP [dm6]	C	T	6.814e^-5	0.49	INTRON ATP7	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	8780905	X_8780905_DEL [dm3] X_8886872_DEL [dm6]	TGATATGGAGGT...	T	6.886e^-5	0.49	INTRON Moe
X	13263922	X_13263922_SNP [dm3] X_13369889_SNP [dm6]	T	C	6.889e^-5	0.49	UPSTREAM CG1640 INTRON dmrt11E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1823142	3L_1823142_SNP [dm3] 3L_1823142_SNP [dm6]	C	T	6.930e^-5	0.49	DOWNSTREAM GV1 & 1 other INTERGENIC
X	17302925	X_17302925_SNP [dm3] X_17408892_SNP [dm6]	T	A	6.974e^-5	0.49	INTERGENIC
2L	6031613	2L_6031613_SNP [dm3] 2L_6031613_SNP [dm6]	G	A	6.981e^-5	0.49	SYNONYMOUS_CODING CG9109	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4694453	2L_4694453_SNP [dm3] 2L_4694453_SNP [dm6]	G	T	6.982e^-5	0.49	UPSTREAM CG34351 INTERGENIC
3L	3140589	3L_3140589_SNP [dm3] 3L_3140589_SNP [dm6]	A	T	6.983e^-5	0.49	UPSTREAM CG11537 INTRON CG11537
2L	4377957	2L_4377957_SNP [dm3] 2L_4377957_SNP [dm6]	C	A	7.017e^-5	0.491	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	22915204	2L_22915204_SNP [dm3] 2L_23022472_SNP [dm6]	G	A	7.129e^-5	0.493	INTRON Cht3
2R	18975687	2R_18975687_SNP [dm3] 2R_23088164_SNP [dm6]	C	T	7.133e^-5	0.493	UTR_3_PRIME CG13538
2R	18975963	2R_18975963_SNP [dm3] 2R_23088440_SNP [dm6]	G	C	7.133e^-5	0.493	DOWNSTREAM CG13538 INTERGENIC
3R	26275163	3R_26275163_SNP [dm3] 3R_30449441_SNP [dm6]	G	A	7.153e^-5	0.493	INTRON aralar1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27022204	3R_27022204_INS [dm3] 3R_31196482_INS [dm6]	A	AACGAA	7.206e^-5	0.493	UPSTREAM mesh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14098769	3L_14098769_SNP [dm3] 3L_14105669_SNP [dm6]	T	G	7.211e^-5	0.493	INTRON Sox21a	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	4352349	3L_4352349_SNP [dm3] 3L_4352349_SNP [dm6]	G	T	7.226e^-5	0.493	INTRON Cip4
2R	9346249	2R_9346249_SNP [dm3] 2R_13458744_SNP [dm6]	A	G	7.278e^-5	0.495	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9962617	3L_9962617_SNP [dm3] 3L_9969517_SNP [dm6]	G	C	7.325e^-5	0.496	INTRON Nc
3L	8694910	3L_8694910_SNP [dm3] 3L_8701810_SNP [dm6]	T	A	7.363e^-5	0.497	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	21467137	3L_21467137_SNP [dm3] 3L_21474037_SNP [dm6]	G	C	7.394e^-5	0.497	DOWNSTREAM croc INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	7645371	X_7645371_SNP [dm3] X_7751338_SNP [dm6]	T	A	7.432e^-5	0.498	INTERGENIC
3L	5160344	3L_5160344_SNP [dm3] 3L_5167244_SNP [dm6]	C	A	7.467e^-5	0.498	INTRON shep
3R	8483914	3R_8483914_SNP [dm3] 3R_12658192_SNP [dm6]	A	G	7.585e^-5	0.499	SYNONYMOUS_CODING CG6225	TF binding site mE1_TFBS_cad
2R	11962081	2R_11962081_SNP [dm3] 2R_16074576_SNP [dm6]	G	A	7.589e^-5	0.499	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	11661700	X_11661700_SNP [dm3] X_11767667_SNP [dm6]	C	T	7.603e^-5	0.499	SYNONYMOUS_CODING m	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11805351	3L_11805351_SNP [dm3] 3L_11812251_SNP [dm6]	C	T	7.627e^-5	0.499	SYNONYMOUS_CODING CG42255	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10748891	3R_10748891_SNP [dm3] 3R_14923169_SNP [dm6]	T	C	7.629e^-5	0.499	DOWNSTREAM CR45598 & 1 other INTERGENIC
3R	5017707	3R_5017707_SNP [dm3] 3R_9191985_SNP [dm6]	C	A	7.653e^-5	0.499	INTRON pum
2R	10881993	2R_10881993_SNP [dm3] 2R_14994488_SNP [dm6]	C	G	7.665e^-5	0.499	UPSTREAM CR43830 & 1 other INTERGENIC
2L	22915292	2L_22915292_SNP [dm3] 2L_23022560_SNP [dm6]	C	A	7.761e^-5	0.502	INTRON Cht3
3L	8225217	3L_8225217_SNP [dm3] 3L_8232117_SNP [dm6]	G	A	7.767e^-5	0.502	SYNONYMOUS_CODING CG7213 DOWNSTREAM CR43953
3L	7089538	3L_7089538_SNP [dm3] 3L_7096438_SNP [dm6]	G	A	7.851e^-5	0.505	INTRON form3
2R	6710927	2R_6710927_SNP [dm3] 2R_10823422_SNP [dm6]	C	T	7.856e^-5	0.505	UTR_5_PRIME CG12325 UPSTREAM CG12325 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8298059	2R_8298059_SNP [dm3] 2R_12410554_SNP [dm6]	G	A	7.980e^-5	0.511	NON_SYNONYMOUS_CODING CG33626 SPLICE_SITE_REGION CG33626 UPSTREAM CG33627 DOWNSTREAM CG30050
X	296207	X_296207_SNP [dm3] X_402174_SNP [dm6]	G	A	8.022e^-5	0.511	INTRON CG32816	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12066898	2R_12066898_SNP [dm3] 2R_16179393_SNP [dm6]	A	G	8.047e^-5	0.511	INTRON Lis-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4846986	2L_4846986_SNP [dm3] 2L_4846986_SNP [dm6]	T	A	8.063e^-5	0.511	UPSTREAM mxt & 1 other INTRON mxt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	5117730	2R_5117730_SNP [dm3] 2R_9230225_SNP [dm6]	G	T	8.090e^-5	0.511	INTRON hig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17353951	3R_17353951_SNP [dm3] 3R_21528229_SNP [dm6]	G	T	8.121e^-5	0.511	UTR_3_PRIME CG7956 DOWNSTREAM CG7956	TF binding site BDTNP1_TFBS_slp1
2L	22238645	2L_22238645_SNP [dm3] 2L_22238645_SNP [dm6]	G	A	8.175e^-5	0.512	DOWNSTREAM CR43765 INTERGENIC	transposable element FlyBase
2R	9110127	2R_9110127_SNP [dm3] 2R_13222622_SNP [dm6]	C	A	8.184e^-5	0.512	UTR_5_PRIME Dp UPSTREAM Fsn & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2R	8320976	2R_8320976_SNP [dm3] 2R_12433471_SNP [dm6]	C	T	8.245e^-5	0.514	SYNONYMOUS_CODING DUBAI	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3374455	2L_3374455_SNP [dm3] 2L_3374455_SNP [dm6]	A	G	8.301e^-5	0.514	SYNONYMOUS_CODING CG15412	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21648859	3L_21648859_SNP [dm3] 3L_21655759_SNP [dm6]	C	T	8.309e^-5	0.514	INTRON CG43980
3L	1302821	3L_1302821_SNP [dm3] 3L_1302821_SNP [dm6]	A	T	8.396e^-5	0.518	UPSTREAM CG9149 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	3140554	3L_3140554_SNP [dm3] 3L_3140554_SNP [dm6]	A	T	8.455e^-5	0.519	UPSTREAM CG11537 INTRON CG11537
2R	9346594	2R_9346594_SNP [dm3] 2R_13459089_SNP [dm6]	T	C	8.461e^-5	0.519	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16498756	3R_16498756_SNP [dm3] 3R_20673034_SNP [dm6]	G	T	8.514e^-5	0.52	DOWNSTREAM Cpr92F INTERGENIC
3R	6460623	3R_6460623_SNP [dm3] 3R_10634901_SNP [dm6]	A	G	8.565e^-5	0.522	INTRON hth	TF binding site mE1_TFBS_chinmo
2R	18975781	2R_18975781_SNP [dm3] 2R_23088258_SNP [dm6]	C	T	8.625e^-5	0.523	DOWNSTREAM CG13538 INTERGENIC
2L	5504292	2L_5504292_SNP [dm3] 2L_5504292_SNP [dm6]	T	A	8.644e^-5	0.523	INTERGENIC
2R	18675497	2R_18675497_SNP [dm3] 2R_22787992_SNP [dm6]	C	T	8.672e^-5	0.523	INTRON CG42260
X	5903785	X_5903785_SNP [dm3] X_6009752_SNP [dm6]	G	T	8.793e^-5	0.529	INTRON mab-21
X	16349994	X_16349994_SNP [dm3] X_16455961_SNP [dm6]	C	T	8.823e^-5	0.529	UTR_3_PRIME para DOWNSTREAM Rbp2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
3L	11216709	3L_11216709_SNP [dm3] 3L_11223609_SNP [dm6]	A	G	8.947e^-5	0.531	INTRON CG42671	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17101763	3R_17101763_SNP [dm3] 3R_21276041_SNP [dm6]	G	A	8.951e^-5	0.531	SYNONYMOUS_CODING CG3301 DOWNSTREAM SIFaR	TF binding site mE1_TFBS_cad
3R	7882869	3R_7882869_SNP [dm3] 3R_12057147_SNP [dm6]	A	T	8.973e^-5	0.531	INTERGENIC
X	12799963	X_12799963_SNP [dm3] X_12905930_SNP [dm6]	G	T	9.000e^-5	0.531	UTR_5_PRIME CG4404	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18824703	3R_18824703_DEL [dm3] 3R_22998981_DEL [dm6]	CCCATT	C	9.001e^-5	0.531	UPSTREAM Nha2 INTERGENIC
2L	5391799	2L_5391799_SNP [dm3] 2L_5391799_SNP [dm6]	C	A	9.105e^-5	0.534	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
3R	16560575	3R_16560575_SNP [dm3] 3R_20734853_SNP [dm6]	G	A	9.141e^-5	0.534	SPLICE_SITE_ACCEPTOR CR42786 UPSTREAM cdc2c INTRON CR42786
2R	4929659	2R_4929659_SNP [dm3] 2R_9042154_SNP [dm6]	G	A	9.149e^-5	0.534	UPSTREAM Ance-4 DOWNSTREAM PPO2 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	887874	3L_887874_SNP [dm3] 3L_887874_SNP [dm6]	A	G	9.197e^-5	0.534	UPSTREAM CG32479 INTRON CG32479
2R	16377382	2R_16377382_SNP [dm3] 2R_20489877_SNP [dm6]	A	T	9.228e^-5	0.534	INTERGENIC
3R	3168126	3R_3168126_SNP [dm3] 3R_7342404_SNP [dm6]	G	A	9.230e^-5	0.534	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	21730750	3L_21730750_SNP [dm3] 3L_21737650_SNP [dm6]	C	G	9.252e^-5	0.534	DOWNSTREAM CG14567 INTERGENIC	TF binding site mE1_TFBS_cad
2R	17999559	2R_17999559_SNP [dm3] 2R_22112054_SNP [dm6]	G	A	9.329e^-5	0.535	SYNONYMOUS_CODING Vrp1
3L	21724732	3L_21724732_SNP [dm3] 3L_21731632_SNP [dm6]	T	G	9.399e^-5	0.535	UPSTREAM CG14569 INTERGENIC
X	17628606	X_17628606_SNP [dm3] X_17734573_SNP [dm6]	A	T	9.421e^-5	0.535	INTRON CG42684	TF binding site BDTNP1_TFBS_dl
2R	12242873	2R_12242873_SNP [dm3] 2R_16355368_SNP [dm6]	T	A	9.444e^-5	0.535	UPSTREAM CG30098 INTERGENIC
2L	12407752	2L_12407752_SNP [dm3] 2L_12407752_SNP [dm6]	T	A	9.499e^-5	0.535	INTRON vir-1
3L	21724556	3L_21724556_SNP [dm3] 3L_21731456_SNP [dm6]	C	A	9.523e^-5	0.535	SYNONYMOUS_CODING CG14569
2L	19012949	2L_19012949_SNP [dm3] 2L_19012949_SNP [dm6]	G	A	9.546e^-5	0.535	DOWNSTREAM CR45292 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14684959	X_14684959_SNP [dm3] X_14790926_SNP [dm6]	C	A	9.551e^-5	0.535	INTRON rut	TF binding site mE1_TFBS_cad
3L	10462100	3L_10462100_SNP [dm3] 3L_10469000_SNP [dm6]	A	G	9.630e^-5	0.535	DOWNSTREAM S-Lap3 INTERGENIC
2L	6559669	2L_6559669_SNP [dm3] 2L_6559669_SNP [dm6]	C	T	9.637e^-5	0.535	NON_SYNONYMOUS_CODING CG11043 UTR_3_PRIME CG9596 DOWNSTREAM CG9596 & 1 other	TF binding site mE1_TFBS_cad
2R	1990068	2R_1990068_SNP [dm3] 2R_6102563_SNP [dm6]	A	G	9.675e^-5	0.535	INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	22213695	3R_22213695_SNP [dm3] 3R_26387973_SNP [dm6]	A	T	9.684e^-5	0.535	INTERGENIC
2L	8008734	2L_8008734_SNP [dm3] 2L_8008734_SNP [dm6]	C	T	9.737e^-5	0.535	NON_SYNONYMOUS_CODING CG12560 DOWNSTREAM CG34010
2R	17850117	2R_17850117_SNP [dm3] 2R_21962612_SNP [dm6]	A	G	9.744e^-5	0.535	INTERGENIC
X	8781375	X_8781375_SNP [dm3] X_8887342_SNP [dm6]	C	G	9.745e^-5	0.535	INTRON Moe	TF binding site BDTNP1_TFBS_dl
2L	12407757	2L_12407757_SNP [dm3] 2L_12407757_SNP [dm6]	C	T	9.768e^-5	0.535	INTRON vir-1
3L	21453439	3L_21453439_SNP [dm3] 3L_21460339_SNP [dm6]	G	A	9.769e^-5	0.535	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	8781364	X_8781364_SNP [dm3] X_8887331_SNP [dm6]	C	A	9.779e^-5	0.535	INTRON Moe	TF binding site BDTNP1_TFBS_dl
3R	24698496	3R_24698496_SNP [dm3] 3R_28872774_SNP [dm6]	C	A	9.911e^-5	0.539	SYNONYMOUS_CODING CG33203 UPSTREAM CG14529	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	19251970	3R_19251970_SNP [dm3] 3R_23426248_SNP [dm6]	T	A	9.932e^-5	0.539	UPSTREAM CG43694 INTRON CG4374
2L	7025221	2L_7025221_SNP [dm3] 2L_7025221_SNP [dm6]	G	C	9.938e^-5	0.539	SYNONYMOUS_CODING CG31908	TF binding site mE1_TFBS_cad
3L	18368614	3L_18368614_SNP [dm3] 3L_18375514_SNP [dm6]	A	T	9.979e^-5	0.539	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5991843	3L_5991843_SNP [dm3] 3L_5998743_SNP [dm6]	C	T	1.010e^-4	0.543	INTRON PVRAP
3L	12228404	3L_12228404_SNP [dm3] 3L_12235304_SNP [dm6]	A	G	1.010e^-4	0.543	INTRON app
3R	14615291	3R_14615291_SNP [dm3] 3R_18789569_SNP [dm6]	A	C	1.026e^-4	0.55	INTRON CG7720	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17341048	2R_17341048_SNP [dm3] 2R_21453543_SNP [dm6]	C	A	1.036e^-4	0.552	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16987047	3R_16987047_SNP [dm3] 3R_21161325_SNP [dm6]	A	G	1.039e^-4	0.552	UPSTREAM CG10824 INTRON SNF4Agamma
3R	23950077	3R_23950077_SNP [dm3] 3R_28124355_SNP [dm6]	A	C	1.040e^-4	0.552	INTERGENIC
X	3443437	X_3443437_DEL [dm3] X_3549404_DEL [dm6]	TAGCCT	T	1.045e^-4	0.553	INTRON CG32791
2R	19738959	2R_19738959_SNP [dm3] 2R_23851436_SNP [dm6]	G	C	1.048e^-4	0.553	UTR_5_PRIME ytr UPSTREAM gbb & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	9765699	2R_9765699_SNP [dm3] 2R_13878194_SNP [dm6]	G	C	1.050e^-4	0.553	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	22204118	X_22204118_SNP [dm3] X_22802282_SNP [dm6]	T	C	1.054e^-4	0.553	INTERGENIC
2L	11472912	2L_11472912_SNP [dm3] 2L_11472912_SNP [dm6]	A	C	1.056e^-4	0.553	INTERGENIC	TF binding site mE1_TFBS_cad
2L	19046247	2L_19046247_SNP [dm3] 2L_19046247_SNP [dm6]	C	A	1.059e^-4	0.553	SYNONYMOUS_CODING Acn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	16560523	3R_16560523_SNP [dm3] 3R_20734801_SNP [dm6]	C	T	1.066e^-4	0.555	UPSTREAM cdc2c INTRON CR42786
2L	14629139	2L_14629139_SNP [dm3] 2L_14629139_SNP [dm6]	T	C	1.069e^-4	0.555	INTRON osp
2L	4661387	2L_4661387_SNP [dm3] 2L_4661387_SNP [dm6]	G	C	1.079e^-4	0.558	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	14447522	3R_14447522_SNP [dm3] 3R_18621800_SNP [dm6]	C	A	1.082e^-4	0.558	UPSTREAM CG14304 INTRON qin
3R	10810916	3R_10810916_DEL [dm3] 3R_14985194_DEL [dm6]	CT	A	1.084e^-4	0.558	INTERGENIC
3R	17198243	3R_17198243_SNP [dm3] 3R_21372521_SNP [dm6]	A	G	1.085e^-4	0.558	UTR_3_PRIME mod_mdg4_ INTRON mod_mdg4_	TF binding site mE1_TFBS_cad
3L	4003796	3L_4003796_SNP [dm3] 3L_4003796_SNP [dm6]	A	C	1.104e^-4	0.566	SYNONYMOUS_CODING CG14985	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19634788	X_19634788_SNP [dm3] X_19740755_SNP [dm6]	G	A	1.109e^-4	0.567	UTR_3_PRIME CoVIb DOWNSTREAM CG18809 & 1 other
2L	13579237	2L_13579237_SNP [dm3] 2L_13579237_SNP [dm6]	C	A	1.117e^-4	0.568	INTRON kuz
3L	3021231	3L_3021231_SNP [dm3] 3L_3021231_SNP [dm6]	C	A	1.119e^-4	0.568	INTERGENIC
2R	14241263	2R_14241263_SNP [dm3] 2R_18353758_SNP [dm6]	C	T	1.121e^-4	0.568	INTRON sbb	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	10731198	2L_10731198_SNP [dm3] 2L_10731198_SNP [dm6]	C	A	1.145e^-4	0.576	SYNONYMOUS_CODING CG17118 DOWNSTREAM CG6443 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4652503	2L_4652503_SNP [dm3] 2L_4652503_SNP [dm6]	C	T	1.150e^-4	0.576	SYNONYMOUS_CODING CG3355 UTR_3_PRIME CG3355	TF binding site mE1_TFBS_chinmo
2L	1696620	2L_1696620_SNP [dm3] 2L_1696620_SNP [dm6]	C	T	1.151e^-4	0.576	SYNONYMOUS_CODING chinmo UTR_3_PRIME chinmo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17353911	3R_17353911_SNP [dm3] 3R_21528189_SNP [dm6]	C	T	1.151e^-4	0.576	UTR_3_PRIME CG7956 DOWNSTREAM CG7956	TF binding site BDTNP1_TFBS_slp1
3R	22613955	3R_22613955_DEL [dm3] 3R_26788233_DEL [dm6]	GG	G	1.152e^-4	0.576	INTERGENIC
3R	22213265	3R_22213265_SNP [dm3] 3R_26387543_SNP [dm6]	T	C	1.166e^-4	0.577	INTERGENIC
3R	23947771	3R_23947771_SNP [dm3] 3R_28122049_SNP [dm6]	A	G	1.172e^-4	0.577	INTERGENIC
X	14383526	X_14383526_SNP [dm3] X_14489493_SNP [dm6]	A	G	1.173e^-4	0.577	INTERGENIC
2R	9186795	2R_9186795_DEL [dm3] 2R_13299290_DEL [dm6]	TC	A	1.178e^-4	0.577	UTR_5_PRIME CG17047 UPSTREAM CG4734 & 1 other
3R	18519635	3R_18519635_SNP [dm3] 3R_22693913_SNP [dm6]	G	A	1.179e^-4	0.577	SYNONYMOUS_CODING Nup133	TF binding site mE1_TFBS_cad
X	11171306	X_11171306_SNP [dm3] X_11277273_SNP [dm6]	A	T	1.179e^-4	0.577	INTRON CG44422
2R	17526011	2R_17526011_SNP [dm3] 2R_21638506_SNP [dm6]	A	G	1.180e^-4	0.577	DOWNSTREAM CG10321 INTERGENIC
3L	10357253	3L_10357253_SNP [dm3] 3L_10364153_SNP [dm6]	A	T	1.181e^-4	0.577	UPSTREAM CR44327 EXON CR44327	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	18415066	X_18415066_SNP [dm3] X_18521033_SNP [dm6]	T	A	1.183e^-4	0.577	SYNONYMOUS_CODING Bx DOWNSTREAM CG6481 & 1 other
3R	10102502	3R_10102502_SNP [dm3] 3R_14276780_SNP [dm6]	G	A	1.189e^-4	0.577	SYNONYMOUS_CODING trx INTRON trx	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	13198506	2L_13198506_SNP [dm3] 2L_13198506_SNP [dm6]	G	A	1.190e^-4	0.577	SYNONYMOUS_CODING CG16972	TF binding site mE1_TFBS_cad
3R	15583019	3R_15583019_SNP [dm3] 3R_19757297_SNP [dm6]	A	G	1.192e^-4	0.577	INTRON GluClalpha
X	19027503	X_19027503_SNP [dm3] X_19133470_SNP [dm6]	G	C	1.194e^-4	0.577	EXON CR45711
3L	7522616	3L_7522616_SNP [dm3] 3L_7529516_SNP [dm6]	C	T	1.202e^-4	0.58	INTRON lqf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	2580467	3L_2580467_SNP [dm3] 3L_2580467_SNP [dm6]	A	T	1.212e^-4	0.583	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	299802	X_299802_SNP [dm3] X_405769_SNP [dm6]	A	T	1.215e^-4	0.583	INTRON CG32816	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	10357265	3L_10357265_SNP [dm3] 3L_10364165_SNP [dm6]	A	G	1.222e^-4	0.585	UPSTREAM CR44327 EXON CR44327	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8355163	2L_8355163_SNP [dm3] 2L_8355163_SNP [dm6]	A	G	1.229e^-4	0.585	UTR_3_PRIME Mur29B DOWNSTREAM CG7627
2R	11760723	2R_11760723_SNP [dm3] 2R_15873218_SNP [dm6]	G	A	1.232e^-4	0.585	NON_SYNONYMOUS_CODING sli UTR_3_PRIME sli	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	21708308	3L_21708308_SNP [dm3] 3L_21715208_SNP [dm6]	T	C	1.232e^-4	0.585	INTERGENIC
X	5451973	X_5451973_SNP [dm3] X_5557940_SNP [dm6]	T	C	1.238e^-4	0.585	INTRON Vsx2
2R	17340582	2R_17340582_SNP [dm3] 2R_21453077_SNP [dm6]	T	C	1.246e^-4	0.585	INTRON Sdc
3R	4802940	3R_4802940_SNP [dm3] 3R_8977218_SNP [dm6]	G	A	1.246e^-4	0.585	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	10810921	3R_10810921_SNP [dm3] 3R_14985199_SNP [dm6]	T	A	1.247e^-4	0.585	INTERGENIC
3R	17101685	3R_17101685_SNP [dm3] 3R_21275963_SNP [dm6]	A	T	1.248e^-4	0.585	SYNONYMOUS_CODING CG3301 DOWNSTREAM SIFaR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19906578	3R_19906578_SNP [dm3] 3R_24080856_SNP [dm6]	T	C	1.257e^-4	0.588	INTRON 4EHP
2L	611314	2L_611314_SNP [dm3] 2L_611314_SNP [dm6]	C	T	1.261e^-4	0.588	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	7989957	3R_7989957_SNP [dm3] 3R_12164235_SNP [dm6]	G	A	1.279e^-4	0.594	NON_SYNONYMOUS_CODING Cpn	TF binding site mE1_TFBS_chinmo
2R	16625241	2R_16625241_SNP [dm3] 2R_20737736_SNP [dm6]	T	C	1.281e^-4	0.594	INTRON dpr
3R	22312065	3R_22312065_SNP [dm3] 3R_26486343_SNP [dm6]	C	T	1.282e^-4	0.594	INTRON plum
2L	9238068	2L_9238068_DEL [dm3] 2L_9238068_DEL [dm6]	TT	T	1.298e^-4	0.599	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	3975393	2L_3975393_SNP [dm3] 2L_3975393_SNP [dm6]	A	T	1.305e^-4	0.599	INTRON fred
3L	7999804	3L_7999804_SNP [dm3] 3L_8006704_SNP [dm6]	T	A	1.307e^-4	0.599	INTRON nmo
3R	3511919	3R_3511919_SNP [dm3] 3R_7686197_SNP [dm6]	A	G	1.311e^-4	0.599	INTRON Nlg1
3R	23316186	3R_23316186_SNP [dm3] 3R_27490464_SNP [dm6]	T	C	1.316e^-4	0.599	DOWNSTREAM Gr98a INTERGENIC
3R	23316193	3R_23316193_SNP [dm3] 3R_27490471_SNP [dm6]	G	A	1.316e^-4	0.599	DOWNSTREAM Gr98a INTERGENIC
2L	7921537	2L_7921537_SNP [dm3] 2L_7921537_SNP [dm6]	T	G	1.316e^-4	0.599	INTRON Snoo
2R	9648819	2R_9648819_SNP [dm3] 2R_13761314_SNP [dm6]	C	A	1.331e^-4	0.604	INTERGENIC
2R	1731212	2R_1731212_SNP [dm3] 2R_5843707_SNP [dm6]	C	A	1.336e^-4	0.605	INTRON dpr12
3R	26068301	3R_26068301_SNP [dm3] 3R_30242579_SNP [dm6]	T	A	1.341e^-4	0.606	SYNONYMOUS_CODING CG9737
2R	8144411	2R_8144411_SNP [dm3] 2R_12256906_SNP [dm6]	G	T	1.350e^-4	0.608	UPSTREAM Vha36-2 INTERGENIC
3R	17729029	3R_17729029_INS [dm3] 3R_21903307_INS [dm6]	T	TT	1.355e^-4	0.608	INTRON CG6678	TF binding site BDTNP1_TFBS_twi
2L	14936262	2L_14936262_SNP [dm3] 2L_14936262_SNP [dm6]	A	G	1.355e^-4	0.608	INTRON CG42313
2L	12379087	2L_12379087_SNP [dm3] 2L_12379087_SNP [dm6]	T	C	1.364e^-4	0.611	INTRON bru-2
3R	22213629	3R_22213629_SNP [dm3] 3R_26387907_SNP [dm6]	C	G	1.376e^-4	0.614	INTERGENIC
2R	9647975	2R_9647975_SNP [dm3] 2R_13760470_SNP [dm6]	C	T	1.378e^-4	0.614	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1629711	2R_1629711_SNP [dm3] 2R_5742206_SNP [dm6]	T	A	1.381e^-4	0.614	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7424719	3L_7424719_DEL [dm3] 3L_7431619_DEL [dm6]	AATTTGGT	A	1.390e^-4	0.615	INTRON CG42458
2L	6777025	2L_6777025_SNP [dm3] 2L_6777025_SNP [dm6]	T	C	1.391e^-4	0.615	SYNONYMOUS_CODING CG17378	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3344380	2L_3344380_SNP [dm3] 2L_3344380_SNP [dm6]	G	A	1.396e^-4	0.616	INTRON E23
X	20755057	X_20755057_SNP [dm3] X_20884030_SNP [dm6]	G	C	1.398e^-4	0.616	INTRON shakB
3R	10656056	3R_10656056_SNP [dm3] 3R_14830334_SNP [dm6]	A	T	1.404e^-4	0.617	INTRON btsz	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10748855	3R_10748855_SNP [dm3] 3R_14923133_SNP [dm6]	T	G	1.410e^-4	0.617	DOWNSTREAM CR45598 & 1 other INTERGENIC
3L	13021674	3L_13021674_SNP [dm3] 3L_13028574_SNP [dm6]	T	C	1.412e^-4	0.617	UPSTREAM CG17672 EXON CR45172	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21160042	X_21160042_SNP [dm3] X_21289015_SNP [dm6]	G	A	1.424e^-4	0.621	NON_SYNONYMOUS_CODING CG1494
2L	11683184	2L_11683184_SNP [dm3] 2L_11683184_SNP [dm6]	G	A	1.427e^-4	0.621	INTERGENIC
3R	17018141	3R_17018141_SNP [dm3] 3R_21192419_SNP [dm6]	A	G	1.431e^-4	0.621	INTRON SNF4Agamma
X	15299108	X_15299108_SNP [dm3] X_15405075_SNP [dm6]	C	T	1.442e^-4	0.621	DOWNSTREAM Cngl INTRON Cngl	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	7700561	3R_7700561_DEL [dm3] 3R_11874839_DEL [dm6]	GCGAATCGAG	G	1.444e^-4	0.621	INTERGENIC
X	20773682	X_20773682_SNP [dm3] X_20902655_SNP [dm6]	A	C	1.448e^-4	0.621	INTRON shakB
2R	3081100	2R_3081100_SNP [dm3] 2R_7193595_SNP [dm6]	C	G	1.453e^-4	0.621	SYNONYMOUS_CODING pk INTRON pk	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21460495	3L_21460495_SNP [dm3] 3L_21467395_SNP [dm6]	A	C	1.467e^-4	0.621	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17107764	3L_17107764_DEL [dm3] 3L_17114664_DEL [dm6]	TT	T	1.470e^-4	0.621	INTRON Rbp6
X	19488541	X_19488541_SNP [dm3] X_19594508_SNP [dm6]	C	T	1.474e^-4	0.621	SYNONYMOUS_CODING CG14205	TF binding site mE1_TFBS_sens
X	9906430	X_9906430_SNP [dm3] X_10012397_SNP [dm6]	A	G	1.476e^-4	0.621	NON_SYNONYMOUS_CODING CG2990
3R	26158865	3R_26158865_SNP [dm3] 3R_30333143_SNP [dm6]	C	T	1.477e^-4	0.621	INTRON hdc
2L	12138627	2L_12138627_DEL [dm3] 2L_12138627_DEL [dm6]	TAA	T	1.484e^-4	0.621	INTRON Gr33a
2L	6762086	2L_6762086_DEL [dm3] 2L_6762086_DEL [dm6]	AA	G	1.487e^-4	0.621	INTRON CG11321	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	13828945	X_13828945_SNP [dm3] X_13934912_SNP [dm6]	C	T	1.493e^-4	0.621	INTRON mamo
X	1614597	X_1614597_SNP [dm3] X_1720564_SNP [dm6]	T	A	1.494e^-4	0.621	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	6662975	3L_6662975_SNP [dm3] 3L_6669875_SNP [dm6]	C	A	1.497e^-4	0.621	INTERGENIC
2R	1613085	2R_1613085_SNP [dm3] 2R_5725580_SNP [dm6]	T	G	1.498e^-4	0.621	INTRON ap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA
3R	5112611	3R_5112611_SNP [dm3] 3R_9286889_SNP [dm6]	T	A	1.499e^-4	0.621	INTERGENIC
3R	9327546	3R_9327546_SNP [dm3] 3R_13501824_SNP [dm6]	C	A	1.500e^-4	0.621	INTERGENIC
2L	4850879	2L_4850879_SNP [dm3] 2L_4850879_SNP [dm6]	A	G	1.505e^-4	0.621	SYNONYMOUS_CODING Mon1 UPSTREAM mRpS2
2R	1667091	2R_1667091_INS [dm3] 2R_5779586_INS [dm6]	T	TTTTAAGT	1.506e^-4	0.621	INTRON ZnT41F
X	12800881	X_12800881_SNP [dm3] X_12906848_SNP [dm6]	T	C	1.507e^-4	0.621	UPSTREAM CG4404 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	12677547	3L_12677547_SNP [dm3] 3L_12684447_SNP [dm6]	C	A	1.508e^-4	0.621	INTERGENIC
2L	3968744	2L_3968744_SNP [dm3] 2L_3968744_SNP [dm6]	T	A	1.508e^-4	0.621	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	12138621	2L_12138621_INS [dm3] 2L_12138621_INS [dm6]	A	AA	1.512e^-4	0.621	INTRON Gr33a
3R	17755818	3R_17755818_SNP [dm3] 3R_21930096_SNP [dm6]	C	T	1.514e^-4	0.621	INTERGENIC
2L	4795305	2L_4795305_SNP [dm3] 2L_4795305_SNP [dm6]	T	C	1.514e^-4	0.621	SYNONYMOUS_CODING CG3294	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17638800	3R_17638800_SNP [dm3] 3R_21813078_SNP [dm6]	A	G	1.522e^-4	0.622	INTRON CASK
2R	9779847	2R_9779847_SNP [dm3] 2R_13892342_SNP [dm6]	C	T	1.527e^-4	0.622	SYNONYMOUS_CODING shot INTRON shot
X	7866382	X_7866382_INS [dm3] X_7972349_INS [dm6]	C	CC	1.531e^-4	0.622	INTRON sn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5007663	X_5007663_SNP [dm3] X_5113630_SNP [dm6]	A	C	1.532e^-4	0.622	INTRON rg & 1 other
2L	6558810	2L_6558810_SNP [dm3] 2L_6558810_SNP [dm6]	T	A	1.533e^-4	0.622	UPSTREAM CG11043 DOWNSTREAM CG9596 INTRON CoVb
2R	9347482	2R_9347482_SNP [dm3] 2R_13459977_SNP [dm6]	G	T	1.535e^-4	0.622	INTRON arr
X	917380	X_917380_SNP [dm3] X_1023347_SNP [dm6]	T	G	1.541e^-4	0.622	INTRON su_w[a]_ & 2 others
3L	8048748	3L_8048748_DEL [dm3] 3L_8055648_DEL [dm6]	TT	T	1.547e^-4	0.622	INTRON bip1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7921600	2L_7921600_SNP [dm3] 2L_7921600_SNP [dm6]	A	G	1.547e^-4	0.622	INTRON Snoo
3L	3103563	3L_3103563_SNP [dm3] 3L_3103563_SNP [dm6]	G	A	1.552e^-4	0.622	INTRON Cht7
2L	9124908	2L_9124908_SNP [dm3] 2L_9124908_SNP [dm6]	G	C	1.556e^-4	0.622	UPSTREAM CG32982 DOWNSTREAM CR44615 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	1671469	2R_1671469_SNP [dm3] 2R_5783964_SNP [dm6]	T	C	1.556e^-4	0.622	INTERGENIC	TF binding site BDTNP1_TFBS_z
X	2756238	X_2756238_SNP [dm3] X_2862205_SNP [dm6]	G	A	1.566e^-4	0.622	INTRON kirre
3L	20889066	3L_20889066_SNP [dm3] 3L_20895966_SNP [dm6]	T	A	1.570e^-4	0.622	DOWNSTREAM Sfp77F INTERGENIC
2L	13621409	2L_13621409_SNP [dm3] 2L_13621409_SNP [dm6]	G	C	1.574e^-4	0.622	INTRON kuz
2L	6762098	2L_6762098_SNP [dm3] 2L_6762098_SNP [dm6]	T	C	1.577e^-4	0.622	INTRON CG11321	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22121979	3R_22121979_SNP [dm3] 3R_26296257_SNP [dm6]	C	T	1.583e^-4	0.622	INTERGENIC
3L	8728927	3L_8728927_SNP [dm3] 3L_8735827_SNP [dm6]	T	A	1.584e^-4	0.622	DOWNSTREAM Prm INTRON Prm	TF binding site mE1_TFBS_inv
2R	1619156	2R_1619156_SNP [dm3] 2R_5731651_SNP [dm6]	C	T	1.585e^-4	0.622	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	917738	X_917738_DEL [dm3] X_1023705_DEL [dm6]	CC	C	1.586e^-4	0.622	INTRON su_w[a]_ & 2 others
3L	10732110	3L_10732110_SNP [dm3] 3L_10739010_SNP [dm6]	A	G	1.587e^-4	0.622	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	12937724	3R_12937724_SNP [dm3] 3R_17112002_SNP [dm6]	C	T	1.593e^-4	0.622	INTRON cher
3R	16987346	3R_16987346_SNP [dm3] 3R_21161624_SNP [dm6]	T	C	1.593e^-4	0.622	UPSTREAM CG10824 INTRON SNF4Agamma
3R	15128270	3R_15128270_SNP [dm3] 3R_19302548_SNP [dm6]	C	T	1.594e^-4	0.622	DOWNSTREAM Dl INTERGENIC
X	19954569	X_19954569_SNP [dm3] X_20060536_SNP [dm6]	G	A	1.619e^-4	0.627	INTRON Dop2R
3L	20839390	3L_20839390_SNP [dm3] 3L_20846290_SNP [dm6]	C	T	1.621e^-4	0.627	SPLICE_SITE_REGION CG32432 SYNONYMOUS_CODING CG32432	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	2936399	2L_2936399_SNP [dm3] 2L_2936399_SNP [dm6]	G	A	1.621e^-4	0.627	INTRON lilli
3L	1825298	3L_1825298_SNP [dm3] 3L_1825298_SNP [dm6]	T	C	1.622e^-4	0.627	INTRON Cpr62Ba
2R	8782504	2R_8782504_SNP [dm3] 2R_12894999_SNP [dm6]	A	T	1.625e^-4	0.627	INTRON vg	TF binding site BDTNP1_TFBS_dl
3L	19168660	3L_19168660_SNP [dm3] 3L_19175560_SNP [dm6]	T	C	1.630e^-4	0.627	INTRON fz2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6322388	2R_6322388_SNP [dm3] 2R_10434883_SNP [dm6]	G	C	1.632e^-4	0.627	INTRON RanBPM
3R	21905575	3R_21905575_SNP [dm3] 3R_26079853_SNP [dm6]	C	T	1.640e^-4	0.628	INTRON dys
X	11816942	X_11816942_SNP [dm3] X_11922909_SNP [dm6]	A	T	1.640e^-4	0.628	UPSTREAM Sclp INTRON Sclp
2R	12994494	2R_12994494_SNP [dm3] 2R_17106989_SNP [dm6]	C	T	1.651e^-4	0.63	SYNONYMOUS_CODING CG30456	TF binding site mE1_TFBS_cad
3R	6501131	3R_6501131_SNP [dm3] 3R_10675409_SNP [dm6]	T	G	1.653e^-4	0.63	DOWNSTREAM CG6465 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2R	6322353	2R_6322353_SNP [dm3] 2R_10434848_SNP [dm6]	T	C	1.657e^-4	0.63	INTRON RanBPM
2R	11765931	2R_11765931_SNP [dm3] 2R_15878426_SNP [dm6]	C	G	1.660e^-4	0.63	INTRON sli
X	917349	X_917349_SNP [dm3] X_1023316_SNP [dm6]	G	A	1.673e^-4	0.634	INTRON su_w[a]_ & 2 others
2L	3698955	2L_3698955_SNP [dm3] 2L_3698955_SNP [dm6]	G	A	1.680e^-4	0.635	NON_SYNONYMOUS_CODING CG10031 UPSTREAM CG42464
2R	18675498	2R_18675498_SNP [dm3] 2R_22787993_SNP [dm6]	T	G	1.698e^-4	0.636	INTRON CG42260
X	20755098	X_20755098_SNP [dm3] X_20884071_SNP [dm6]	A	T	1.701e^-4	0.636	INTRON shakB
2R	1609104	2R_1609104_SNP [dm3] 2R_5721599_SNP [dm6]	G	T	1.702e^-4	0.636	INTRON ap
3R	26406136	3R_26406136_SNP [dm3] 3R_30580414_SNP [dm6]	T	C	1.703e^-4	0.636	SYNONYMOUS_CODING CG9702
2R	9165756	2R_9165756_SNP [dm3] 2R_13278251_SNP [dm6]	G	T	1.707e^-4	0.636	INTRON Dh31-R
2R	10819806	2R_10819806_SNP [dm3] 2R_14932301_SNP [dm6]	C	T	1.710e^-4	0.636	SYNONYMOUS_CODING CG10253
2L	6597720	2L_6597720_SNP [dm3] 2L_6597720_SNP [dm6]	G	A	1.711e^-4	0.636	INTRON CG11319
3L	4707303	3L_4707303_SNP [dm3] 3L_4707303_SNP [dm6]	A	C	1.714e^-4	0.636	INTRON RhoGEF64C
2L	8361086	2L_8361086_INS [dm3] 2L_8361086_INS [dm6]	A	ATGT	1.716e^-4	0.636	INTRON CG7627	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7560336	3R_7560336_SNP [dm3] 3R_11734614_SNP [dm6]	G	A	1.718e^-4	0.636	UPSTREAM CG14721 INTERGENIC
3L	13630978	3L_13630978_SNP [dm3] 3L_13637878_SNP [dm6]	G	A	1.720e^-4	0.636	INTRON bru-3
2R	6710924	2R_6710924_SNP [dm3] 2R_10823419_SNP [dm6]	T	C	1.729e^-4	0.636	UTR_5_PRIME CG12325 UPSTREAM CG12325 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4477759	2L_4477759_SNP [dm3] 2L_4477759_SNP [dm6]	T	C	1.731e^-4	0.636	UTR_3_PRIME dp UPSTREAM ine
3R	16703840	3R_16703840_SNP [dm3] 3R_20878118_SNP [dm6]	G	A	1.739e^-4	0.636	NON_SYNONYMOUS_CODING TotZ DOWNSTREAM CR44048
3L	19197195	3L_19197195_SNP [dm3] 3L_19204095_SNP [dm6]	G	C	1.741e^-4	0.636	INTRON fz2
2L	9929533	2L_9929533_SNP [dm3] 2L_9929533_SNP [dm6]	A	G	1.742e^-4	0.636	INTRON CG42366	TF binding site mE1_TFBS_HSA
2L	9951692	2L_9951692_SNP [dm3] 2L_9951692_SNP [dm6]	G	A	1.743e^-4	0.636	DOWNSTREAM CG13126 INTERGENIC
2L	15274491	2L_15274491_SNP [dm3] 2L_15274491_SNP [dm6]	G	A	1.747e^-4	0.636	INTRON UK114	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16195697	X_16195697_SNP [dm3] X_16301664_SNP [dm6]	T	G	1.762e^-4	0.636	SYNONYMOUS_CODING CG3632	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	22276444	2L_22276444_SNP [dm3] 2L_22276444_SNP [dm6]	C	G	1.769e^-4	0.636	INTERGENIC	transposable element FlyBase
X	5450589	X_5450589_SNP [dm3] X_5556556_SNP [dm6]	G	A	1.778e^-4	0.636	INTRON Vsx2	TF binding site mE1_TFBS_Kr
3L	11819714	3L_11819714_SNP [dm3] 3L_11826614_SNP [dm6]	G	T	1.778e^-4	0.636	UPSTREAM CG32095 DOWNSTREAM CycA INTERGENIC
2L	2929721	2L_2929721_SNP [dm3] 2L_2929721_SNP [dm6]	C	T	1.785e^-4	0.636	INTRON lilli
2L	4194033	2L_4194033_SNP [dm3] 2L_4194033_SNP [dm6]	A	T	1.788e^-4	0.636	INTRON CG3714
2L	10339790	2L_10339790_INS [dm3] 2L_10339790_INS [dm6]	C	CTAC	1.794e^-4	0.636	DOWNSTREAM GATAd INTRON SamDC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9129211	2L_9129211_DEL [dm3] 2L_9129211_DEL [dm6]	TG	T	1.795e^-4	0.636	INTRON CG32982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20603930	2L_20603930_SNP [dm3] 2L_20603930_SNP [dm6]	T	C	1.796e^-4	0.636	SYNONYMOUS_CODING CG31677 INTRON CR44909
X	5110341	X_5110341_SNP [dm3] X_5216308_SNP [dm6]	A	G	1.797e^-4	0.636	INTRON CG15465 & 1 other
2R	17256253	2R_17256253_SNP [dm3] 2R_21368748_SNP [dm6]	C	A	1.799e^-4	0.636	INTRON cv-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	296322	X_296322_INS [dm3] X_402289_INS [dm6]	C	CC	1.813e^-4	0.636	INTRON CG32816	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6229163	X_6229163_INS [dm3] X_6335130_INS [dm6]	G	GG	1.813e^-4	0.636	INTERGENIC
2R	18842921	2R_18842921_SNP [dm3] 2R_22955398_SNP [dm6]	C	G	1.821e^-4	0.636	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	5169764	2L_5169764_SNP [dm3] 2L_5169764_SNP [dm6]	G	A	1.822e^-4	0.636	SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	3616646	3L_3616646_SNP [dm3] 3L_3616646_SNP [dm6]	C	T	1.827e^-4	0.636	UTR_3_PRIME CG10357	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	4707277	3L_4707277_SNP [dm3] 3L_4707277_SNP [dm6]	T	A	1.828e^-4	0.636	INTRON RhoGEF64C
3R	22137592	3R_22137592_SNP [dm3] 3R_26311870_SNP [dm6]	G	C	1.829e^-4	0.636	INTERGENIC
3R	23948795	3R_23948795_SNP [dm3] 3R_28123073_SNP [dm6]	G	A	1.830e^-4	0.636	INTERGENIC
3R	5258732	3R_5258732_SNP [dm3] 3R_9433010_SNP [dm6]	T	C	1.832e^-4	0.636	INTRON ps	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	10637641	3R_10637641_DEL [dm3] 3R_14811919_DEL [dm6]	ATTGCG	A	1.835e^-4	0.636	UPSTREAM btsz INTRON btsz	TF binding site mE1_TFBS_inv
X	301985	X_301985_SNP [dm3] X_407952_SNP [dm6]	G	A	1.836e^-4	0.636	INTRON CG32816	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	4864785	2L_4864785_SNP [dm3] 2L_4864785_SNP [dm6]	T	C	1.836e^-4	0.636	INTRON pog
3L	21112809	3L_21112809_SNP [dm3] 3L_21119709_SNP [dm6]	G	C	1.836e^-4	0.636	INTRON ko	TF binding site mE1_TFBS_inv
3L	4642786	3L_4642786_SNP [dm3] 3L_4642786_SNP [dm6]	T	G	1.836e^-4	0.636	NON_SYNONYMOUS_CODING axo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11179381	2R_11179381_SNP [dm3] 2R_15291876_SNP [dm6]	A	T	1.839e^-4	0.636	UPSTREAM Trpm INTRON Trpm
3L	2387346	3L_2387346_SNP [dm3] 3L_2387346_SNP [dm6]	T	C	1.841e^-4	0.636	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	8488105	3R_8488105_SNP [dm3] 3R_12662383_SNP [dm6]	T	A	1.841e^-4	0.636	UPSTREAM CG14395 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	23947791	3R_23947791_SNP [dm3] 3R_28122069_SNP [dm6]	T	A	1.846e^-4	0.636	INTERGENIC
2R	19660942	2R_19660942_SNP [dm3] 2R_23773419_SNP [dm6]	G	T	1.850e^-4	0.636	INTRON CG9850
3R	18193715	3R_18193715_SNP [dm3] 3R_22367993_SNP [dm6]	T	A	1.851e^-4	0.636	UPSTREAM CG5380 INTRON PyK	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8895934	2R_8895934_SNP [dm3] 2R_13008429_SNP [dm6]	A	G	1.852e^-4	0.636	DOWNSTREAM Su_z_2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9751974	3R_9751974_SNP [dm3] 3R_13926252_SNP [dm6]	G	C	1.866e^-4	0.64	INTERGENIC
3R	21230053	3R_21230053_SNP [dm3] 3R_25404331_SNP [dm6]	T	C	1.873e^-4	0.64	INTRON Fur1
3R	23947072	3R_23947072_SNP [dm3] 3R_28121350_SNP [dm6]	G	A	1.877e^-4	0.64	INTERGENIC
3R	16750351	3R_16750351_SNP [dm3] 3R_20924629_SNP [dm6]	G	A	1.881e^-4	0.64	INTRON CG31191 & 1 other	TF binding site mE1_TFBS_inv
2L	12235421	2L_12235421_SNP [dm3] 2L_12235421_SNP [dm6]	G	T	1.884e^-4	0.64	INTRON aret
X	17628582	X_17628582_SNP [dm3] X_17734549_SNP [dm6]	A	G	1.889e^-4	0.64	INTRON CG42684	TF binding site BDTNP1_TFBS_dl
2R	9290456	2R_9290456_SNP [dm3] 2R_13402951_SNP [dm6]	G	T	1.891e^-4	0.64	INTERGENIC
3R	18169667	3R_18169667_SNP [dm3] 3R_22343945_SNP [dm6]	C	A	1.892e^-4	0.64	INTERGENIC
2L	22915319	2L_22915319_SNP [dm3] 2L_23022587_SNP [dm6]	T	A	1.894e^-4	0.64	INTRON Cht3
3R	22198604	3R_22198604_SNP [dm3] 3R_26372882_SNP [dm6]	A	T	1.902e^-4	0.64	INTERGENIC
3R	7990180	3R_7990180_SNP [dm3] 3R_12164458_SNP [dm6]	G	C	1.909e^-4	0.64	NON_SYNONYMOUS_CODING Cpn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8502155	X_8502155_SNP [dm3] X_8608122_SNP [dm6]	A	C	1.910e^-4	0.64	INTERGENIC
2L	5859607	2L_5859607_SNP [dm3] 2L_5859607_SNP [dm6]	G	C	1.911e^-4	0.64	DOWNSTREAM rau INTERGENIC
2R	11765526	2R_11765526_SNP [dm3] 2R_15878021_SNP [dm6]	A	T	1.912e^-4	0.64	INTRON sli
2L	15398232	2L_15398232_INS [dm3] 2L_15398232_INS [dm6]	C	CC	1.914e^-4	0.64	DOWNSTREAM CR45373 INTERGENIC
X	12098376	X_12098376_SNP [dm3] X_12204343_SNP [dm6]	A	G	1.917e^-4	0.64	UTR_5_PRIME Ten-a INTRON Ten-a	TF binding site mE1_TFBS_Trl
3L	19168721	3L_19168721_SNP [dm3] 3L_19175621_SNP [dm6]	G	T	1.923e^-4	0.64	INTRON fz2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16633471	3R_16633471_SNP [dm3] 3R_20807749_SNP [dm6]	C	G	1.926e^-4	0.64	UTR_3_PRIME Syp
3L	5517014	3L_5517014_SNP [dm3] 3L_5523914_SNP [dm6]	T	A	1.934e^-4	0.64	INTRON Lkr
3L	4614934	3L_4614934_SNP [dm3] 3L_4614934_SNP [dm6]	C	T	1.934e^-4	0.64	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19318631	2R_19318631_INS [dm3] 2R_23431108_INS [dm6]	G	GCTGCCCCATG...	1.935e^-4	0.64	INTRON CG9815
X	917641	X_917641_SNP [dm3] X_1023608_SNP [dm6]	G	T	1.938e^-4	0.64	INTRON su_w[a]_ & 2 others
X	10201614	X_10201614_SNP [dm3] X_10307581_SNP [dm6]	G	C	1.952e^-4	0.643	INTRON alpha-Man-I	TF binding site BDTNP1_TFBS_dl mE1_TFBS_run
2R	19236271	2R_19236271_SNP [dm3] 2R_23348748_SNP [dm6]	A	G	1.956e^-4	0.644	DOWNSTREAM CG9863 INTERGENIC
2L	2395445	2L_2395445_SNP [dm3] 2L_2395445_SNP [dm6]	G	A	1.960e^-4	0.644	INTRON VGlut
3L	23444944	3L_23444944_SNP [dm3] 3L_23451844_SNP [dm6]	G	C	1.969e^-4	0.645	INTERGENIC
X	11169090	X_11169090_SNP [dm3] X_11275057_SNP [dm6]	T	G	1.971e^-4	0.645	INTRON CG44422
3R	14531336	3R_14531336_SNP [dm3] 3R_18705614_SNP [dm6]	T	C	1.980e^-4	0.645	UTR_5_PRIME Cha & 1 other
3L	789926	3L_789926_SNP [dm3] 3L_789926_SNP [dm6]	T	G	1.982e^-4	0.645	INTERGENIC
2R	11173422	2R_11173422_SNP [dm3] 2R_15285917_SNP [dm6]	T	C	1.982e^-4	0.645	INTRON Trpm	TF binding site mE1_TFBS_chinmo
3R	25528055	3R_25528055_SNP [dm3] 3R_29702333_SNP [dm6]	G	A	1.998e^-4	0.645	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_twi
3L	2995097	3L_2995097_SNP [dm3] 3L_2995097_SNP [dm6]	T	A	2.000e^-4	0.645	UPSTREAM CG2113 INTERGENIC
3L	7432706	3L_7432706_SNP [dm3] 3L_7439606_SNP [dm6]	C	T	2.001e^-4	0.645	UPSTREAM sphinx1 DOWNSTREAM sphinx2 INTRON CG42458
3R	22866782	3R_22866782_SNP [dm3] 3R_27041060_SNP [dm6]	T	A	2.003e^-4	0.645	INTRON RYa-R
3R	22866793	3R_22866793_SNP [dm3] 3R_27041071_SNP [dm6]	C	T	2.003e^-4	0.645	INTRON RYa-R
2R	9290451	2R_9290451_SNP [dm3] 2R_13402946_SNP [dm6]	A	G	2.006e^-4	0.645	INTERGENIC
3R	7988572	3R_7988572_SNP [dm3] 3R_12162850_SNP [dm6]	C	A	2.006e^-4	0.645	DOWNSTREAM Cpn INTERGENIC
2R	12239379	2R_12239379_SNP [dm3] 2R_16351874_SNP [dm6]	G	A	2.011e^-4	0.646	INTERGENIC
2R	6545594	2R_6545594_SNP [dm3] 2R_10658089_SNP [dm6]	T	A	2.019e^-4	0.646	UPSTREAM CR44452 INTERGENIC
3R	18193129	3R_18193129_SNP [dm3] 3R_22367407_SNP [dm6]	C	T	2.023e^-4	0.646	UPSTREAM PyK & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3L	21669170	3L_21669170_SNP [dm3] 3L_21676070_SNP [dm6]	G	C	2.023e^-4	0.646	NON_SYNONYMOUS_CODING CG7158	TF binding site mE1_TFBS_cad
3R	17550010	3R_17550010_INS [dm3] 3R_21724288_INS [dm6]	G	GTGAAGG	2.026e^-4	0.646	INTERGENIC
2L	13118197	2L_13118197_SNP [dm3] 2L_13118197_SNP [dm6]	G	C	2.029e^-4	0.646	DOWNSTREAM CR44198 INTERGENIC
X	5450650	X_5450650_DEL [dm3] X_5556617_DEL [dm6]	CG	C	2.034e^-4	0.647	INTRON Vsx2	TF binding site mE1_TFBS_Kr
2R	18670168	2R_18670168_SNP [dm3] 2R_22782663_SNP [dm6]	G	C	2.053e^-4	0.65	INTRON CG42260
3R	22866788	3R_22866788_SNP [dm3] 3R_27041066_SNP [dm6]	C	A	2.062e^-4	0.65	INTRON RYa-R
3R	8488201	3R_8488201_SNP [dm3] 3R_12662479_SNP [dm6]	T	G	2.074e^-4	0.65	UPSTREAM CG14395 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	17199936	3R_17199936_SNP [dm3] 3R_21374214_SNP [dm6]	C	A	2.074e^-4	0.65	INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	9963168	3L_9963168_SNP [dm3] 3L_9970068_SNP [dm6]	A	T	2.076e^-4	0.65	SYNONYMOUS_CODING Nc
X	10314219	X_10314219_SNP [dm3] X_10420186_SNP [dm6]	G	A	2.079e^-4	0.65	INTRON CG32683
X	16939049	X_16939049_SNP [dm3] X_17045016_SNP [dm6]	C	T	2.080e^-4	0.65	INTRON CG45002
3R	19178889	3R_19178889_SNP [dm3] 3R_23353167_SNP [dm6]	T	C	2.083e^-4	0.65	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2238616	X_2238616_SNP [dm3] X_2344583_SNP [dm6]	T	G	2.084e^-4	0.65	UTR_5_PRIME mRpL14 DOWNSTREAM phl & 1 other INTRON mRpL14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	23947070	3R_23947070_SNP [dm3] 3R_28121348_SNP [dm6]	T	G	2.100e^-4	0.65	INTERGENIC
2L	10576747	2L_10576747_SNP [dm3] 2L_10576747_SNP [dm6]	T	C	2.101e^-4	0.65	INTRON Trim9 & 1 other
2L	9914487	2L_9914487_SNP [dm3] 2L_9914487_SNP [dm6]	G	A	2.103e^-4	0.65	SYNONYMOUS_CODING Srp54 UPSTREAM yip2
2R	9346693	2R_9346693_SNP [dm3] 2R_13459188_SNP [dm6]	C	G	2.105e^-4	0.65	NON_SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	838180	3L_838180_SNP [dm3] 3L_838180_SNP [dm6]	T	C	2.107e^-4	0.65	SYNONYMOUS_CODING CG13887 UPSTREAM CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	21138405	3R_21138405_DEL [dm3] 3R_25312683_DEL [dm6]	TAGCATTAGTGTCG...	T	2.114e^-4	0.65	INTRON CG31087
3R	22723008	3R_22723008_SNP [dm3] 3R_26897286_SNP [dm6]	T	C	2.119e^-4	0.65	INTRON T48	regulatory region REDfly_CRMs
3L	5194663	3L_5194663_SNP [dm3] 3L_5201563_SNP [dm6]	T	C	2.123e^-4	0.65	UPSTREAM shep INTRON shep
X	13956238	X_13956238_SNP [dm3] X_14062205_SNP [dm6]	C	T	2.124e^-4	0.65	UPSTREAM Ste:CG33236 INTERGENIC
3L	1020705	3L_1020705_SNP [dm3] 3L_1020705_SNP [dm6]	A	C	2.127e^-4	0.65	INTRON trio
X	19488532	X_19488532_SNP [dm3] X_19594499_SNP [dm6]	A	T	2.128e^-4	0.65	SYNONYMOUS_CODING CG14205	TF binding site mE1_TFBS_sens
3R	15303152	3R_15303152_SNP [dm3] 3R_19477430_SNP [dm6]	T	C	2.130e^-4	0.65	INTRON Dys
3R	7562014	3R_7562014_SNP [dm3] 3R_11736292_SNP [dm6]	G	A	2.135e^-4	0.65	SYNONYMOUS_CODING CG14721 DOWNSTREAM Blm	TF binding site mE1_TFBS_sens
2L	12138623	2L_12138623_SNP [dm3] 2L_12138623_SNP [dm6]	A	T	2.138e^-4	0.65	INTRON Gr33a
2L	13146417	2L_13146417_SNP [dm3] 2L_13146417_SNP [dm6]	T	C	2.142e^-4	0.65	UPSTREAM CR44199 INTERGENIC
2L	2696131	2L_2696131_SNP [dm3] 2L_2696131_SNP [dm6]	G	C	2.144e^-4	0.65	NON_SYNONYMOUS_CODING CG15398 INTRON CG31690
3L	10930411	3L_10930411_SNP [dm3] 3L_10937311_SNP [dm6]	G	T	2.147e^-4	0.65	INTERGENIC
3R	22211938	3R_22211938_DEL [dm3] 3R_26386216_DEL [dm6]	AA	A	2.148e^-4	0.65	INTERGENIC
X	14236049	X_14236049_SNP [dm3] X_14342016_SNP [dm6]	A	G	2.155e^-4	0.65	INTRON dpr8
3R	25526948	3R_25526948_SNP [dm3] 3R_29701226_SNP [dm6]	T	C	2.171e^-4	0.65	INTERGENIC	enhancer mE1_CBP_Enhancers
3R	25526950	3R_25526950_DEL [dm3] 3R_29701228_DEL [dm6]	ACTTCAAACCTG...	A	2.171e^-4	0.65	INTERGENIC	enhancer mE1_CBP_Enhancers
2L	9706063	2L_9706063_SNP [dm3] 2L_9706063_SNP [dm6]	A	T	2.174e^-4	0.65	UPSTREAM CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	15589697	3R_15589697_DEL [dm3] 3R_19763975_DEL [dm6]	TATTACACAAAAAATTATTT...	C	2.176e^-4	0.65	INTRON GluClalpha
3L	1997674	3L_1997674_SNP [dm3] 3L_1997674_SNP [dm6]	T	C	2.184e^-4	0.65	INTERGENIC
3R	16770773	3R_16770773_SNP [dm3] 3R_20945051_SNP [dm6]	A	T	2.189e^-4	0.65	INTRON CG31191
3L	12275377	3L_12275377_SNP [dm3] 3L_12282277_SNP [dm6]	G	A	2.190e^-4	0.65	DOWNSTREAM CG10426 INTERGENIC
3R	13723308	3R_13723308_SNP [dm3] 3R_17897586_SNP [dm6]	C	G	2.194e^-4	0.65	INTRON Rim
3L	10282944	3L_10282944_SNP [dm3] 3L_10289844_SNP [dm6]	G	T	2.195e^-4	0.65	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19202754	3R_19202754_SNP [dm3] 3R_23377032_SNP [dm6]	C	A	2.197e^-4	0.65	UTR_3_PRIME CG4393 DOWNSTREAM CG4393	TF binding site mE1_TFBS_inv
3L	7738880	3L_7738880_SNP [dm3] 3L_7745780_SNP [dm6]	T	A	2.201e^-4	0.65	INTRON CG32373
2L	10352046	2L_10352046_SNP [dm3] 2L_10352046_SNP [dm6]	T	G	2.202e^-4	0.65	NON_SYNONYMOUS_CODING CG34367 INTRON CG34367
2R	12242885	2R_12242885_SNP [dm3] 2R_16355380_SNP [dm6]	G	A	2.204e^-4	0.65	UPSTREAM CG30098 INTERGENIC
2L	5558953	2L_5558953_SNP [dm3] 2L_5558953_SNP [dm6]	T	C	2.205e^-4	0.65	UTR_3_PRIME GluRIIA UPSTREAM GluRIIB
2R	17035100	2R_17035100_SNP [dm3] 2R_21147595_SNP [dm6]	T	C	2.213e^-4	0.65	UTR_3_PRIME CG15657 & 1 other DOWNSTREAM CG15657 & 1 other	TF binding site mE1_TFBS_cad
3L	4352436	3L_4352436_SNP [dm3] 3L_4352436_SNP [dm6]	G	A	2.213e^-4	0.65	INTRON Cip4
3R	13911212	3R_13911212_SNP [dm3] 3R_18085490_SNP [dm6]	G	A	2.216e^-4	0.65	INTERGENIC
3L	11547279	3L_11547279_SNP [dm3] 3L_11554179_SNP [dm6]	T	A	2.217e^-4	0.65	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	3741111	2L_3741111_SNP [dm3] 2L_3741111_SNP [dm6]	T	G	2.218e^-4	0.65	INTRON CG10019
3R	13698736	3R_13698736_SNP [dm3] 3R_17873014_SNP [dm6]	G	T	2.219e^-4	0.65	UTR_3_PRIME Rim DOWNSTREAM tinc
2R	9647954	2R_9647954_SNP [dm3] 2R_13760449_SNP [dm6]	A	G	2.220e^-4	0.65	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19937567	3L_19937567_SNP [dm3] 3L_19944467_SNP [dm6]	T	C	2.223e^-4	0.65	INTRON Ac76E
2R	9105197	2R_9105197_SNP [dm3] 2R_13217692_SNP [dm6]	C	T	2.241e^-4	0.65	NON_SYNONYMOUS_CODING CG4630	TF binding site mE1_TFBS_cad
X	11661693	X_11661693_SNP [dm3] X_11767660_SNP [dm6]	A	G	2.245e^-4	0.65	SYNONYMOUS_CODING m	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3975417	2L_3975417_SNP [dm3] 2L_3975417_SNP [dm6]	A	G	2.246e^-4	0.65	INTRON fred
2R	12242857	2R_12242857_SNP [dm3] 2R_16355352_SNP [dm6]	T	C	2.246e^-4	0.65	UPSTREAM CG30098 INTERGENIC
X	6436187	X_6436187_SNP [dm3] X_6542154_SNP [dm6]	G	A	2.248e^-4	0.65	INTRON CG34417
2L	8403361	2L_8403361_SNP [dm3] 2L_8403361_SNP [dm6]	A	G	2.252e^-4	0.65	UPSTREAM emb & 1 other DOWNSTREAM CR44991 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	23945607	3R_23945607_SNP [dm3] 3R_28119885_SNP [dm6]	T	C	2.253e^-4	0.65	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4852711	2L_4852711_SNP [dm3] 2L_4852711_SNP [dm6]	G	A	2.254e^-4	0.65	UPSTREAM pog DOWNSTREAM Mon1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	898828	X_898828_SNP [dm3] X_1004795_SNP [dm6]	A	G	2.257e^-4	0.65	INTERGENIC
2L	3248058	2L_3248058_SNP [dm3] 2L_3248058_SNP [dm6]	A	G	2.264e^-4	0.65	INTERGENIC
2L	2395421	2L_2395421_SNP [dm3] 2L_2395421_SNP [dm6]	A	T	2.273e^-4	0.65	INTRON VGlut
3L	9022758	3L_9022758_SNP [dm3] 3L_9029658_SNP [dm6]	C	T	2.282e^-4	0.65	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	17236737	2R_17236737_SNP [dm3] 2R_21349232_SNP [dm6]	A	T	2.288e^-4	0.65	SYNONYMOUS_CODING CG17974
3R	6779597	3R_6779597_SNP [dm3] 3R_10953875_SNP [dm6]	G	C	2.291e^-4	0.65	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5452116	X_5452116_SNP [dm3] X_5558083_SNP [dm6]	A	G	2.291e^-4	0.65	INTRON Vsx2
X	16361296	X_16361296_DEL [dm3] X_16467263_DEL [dm6]	AGA	A	2.293e^-4	0.65	INTRON para	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3195338	2L_3195338_SNP [dm3] 2L_3195338_SNP [dm6]	G	T	2.294e^-4	0.65	INTRON CG34393
X	18011580	X_18011580_SNP [dm3] X_18117547_SNP [dm6]	T	A	2.297e^-4	0.65	UPSTREAM wupA INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	20773570	X_20773570_SNP [dm3] X_20902543_SNP [dm6]	C	A	2.301e^-4	0.65	INTRON shakB
2L	15256926	2L_15256926_SNP [dm3] 2L_15256926_SNP [dm6]	A	G	2.302e^-4	0.65	SYNONYMOUS_CODING l_2_35Cc UPSTREAM Pol32 DOWNSTREAM yuri	TF binding site mE1_TFBS_sens
X	7265076	X_7265076_SNP [dm3] X_7371043_SNP [dm6]	G	T	2.308e^-4	0.65	INTRON CG1677 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	4352339	3L_4352339_SNP [dm3] 3L_4352339_SNP [dm6]	A	T	2.313e^-4	0.65	INTRON Cip4
2R	19737617	2R_19737617_SNP [dm3] 2R_23850094_SNP [dm6]	C	T	2.314e^-4	0.65	UTR_5_PRIME eIF6 INTRON ytr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	2935749	2L_2935749_SNP [dm3] 2L_2935749_SNP [dm6]	C	A	2.327e^-4	0.65	INTRON lilli
3R	8808028	3R_8808028_SNP [dm3] 3R_12982306_SNP [dm6]	G	A	2.333e^-4	0.65	INTRON Paip2	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	22434904	3R_22434904_SNP [dm3] 3R_26609182_SNP [dm6]	A	G	2.334e^-4	0.65	DOWNSTREAM CR44951 INTERGENIC
X	7265023	X_7265023_SNP [dm3] X_7370990_SNP [dm6]	T	G	2.335e^-4	0.65	INTRON CG1677 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	8241593	3L_8241593_SNP [dm3] 3L_8248493_SNP [dm6]	T	C	2.336e^-4	0.65	INTRON Dscam4
3L	5955978	3L_5955978_SNP [dm3] 3L_5962878_SNP [dm6]	C	A	2.340e^-4	0.65	INTERGENIC
2L	8423990	2L_8423990_SNP [dm3] 2L_8423990_SNP [dm6]	T	C	2.342e^-4	0.65	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3L	5161641	3L_5161641_SNP [dm3] 3L_5168541_SNP [dm6]	C	G	2.348e^-4	0.65	INTRON shep	TF binding site mE1_TFBS_Kr
3R	15589777	3R_15589777_SNP [dm3] 3R_19764055_SNP [dm6]	A	T	2.348e^-4	0.65	INTRON GluClalpha
3R	15589778	3R_15589778_SNP [dm3] 3R_19764056_SNP [dm6]	A	T	2.348e^-4	0.65	INTRON GluClalpha
3R	7982969	3R_7982969_SNP [dm3] 3R_12157247_SNP [dm6]	C	T	2.349e^-4	0.65	INTRON dpr15
3L	21712801	3L_21712801_SNP [dm3] 3L_21719701_SNP [dm6]	A	C	2.358e^-4	0.65	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	7683289	X_7683289_DEL [dm3] X_7789256_DEL [dm6]	TT	G	2.359e^-4	0.65	INTERGENIC
3R	26070617	3R_26070617_SNP [dm3] 3R_30244895_SNP [dm6]	A	T	2.362e^-4	0.65	INTRON CG9733
3R	4407026	3R_4407026_DEL [dm3] 3R_8581304_DEL [dm6]	GG	G	2.362e^-4	0.65	INTRON 5-HT2B
X	11843503	X_11843503_SNP [dm3] X_11949470_SNP [dm6]	A	T	2.367e^-4	0.65	INTRON cac	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12364935	2R_12364935_SNP [dm3] 2R_16477430_SNP [dm6]	A	G	2.368e^-4	0.65	INTERGENIC
3L	7426495	3L_7426495_SNP [dm3] 3L_7433395_SNP [dm6]	G	A	2.369e^-4	0.65	DOWNSTREAM Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	6436180	X_6436180_SNP [dm3] X_6542147_SNP [dm6]	T	C	2.372e^-4	0.65	INTRON CG34417
3L	4518109	3L_4518109_SNP [dm3] 3L_4518109_SNP [dm6]	C	A	2.374e^-4	0.65	INTRON Tie
2R	1964905	2R_1964905_SNP [dm3] 2R_6077400_SNP [dm6]	C	A	2.375e^-4	0.65	INTRON CG7849	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	1973625	2R_1973625_SNP [dm3] 2R_6086120_SNP [dm6]	C	A	2.375e^-4	0.65	UPSTREAM Ars2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8355181	2L_8355181_SNP [dm3] 2L_8355181_SNP [dm6]	T	C	2.381e^-4	0.65	DOWNSTREAM CG7627 & 1 other INTERGENIC
3R	21139883	3R_21139883_SNP [dm3] 3R_25314161_SNP [dm6]	C	A	2.382e^-4	0.65	UPSTREAM CG31087 DOWNSTREAM CG10559 INTERGENIC
3R	11865605	3R_11865605_SNP [dm3] 3R_16039883_SNP [dm6]	T	G	2.390e^-4	0.65	NON_SYNONYMOUS_CODING pnr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20223173	2R_20223173_SNP [dm3] 2R_24335650_SNP [dm6]	C	A	2.394e^-4	0.65	EXON CR44282	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	21643623	3L_21643623_SNP [dm3] 3L_21650523_SNP [dm6]	C	A	2.396e^-4	0.65	INTRON CG43980
2L	5936807	2L_5936807_SNP [dm3] 2L_5936807_SNP [dm6]	C	T	2.399e^-4	0.65	SYNONYMOUS_CODING dsf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10180536	3R_10180536_SNP [dm3] 3R_14354814_SNP [dm6]	G	T	2.401e^-4	0.65	INTRON NK7.1
2L	11081000	2L_11081000_SNP [dm3] 2L_11081000_SNP [dm6]	G	C	2.404e^-4	0.65	INTRON AstC
X	916287	X_916287_SNP [dm3] X_1022254_SNP [dm6]	A	G	2.407e^-4	0.65	INTRON su_w[a]_ & 2 others	transposable element FlyBase
X	15455306	X_15455306_SNP [dm3] X_15561273_SNP [dm6]	T	G	2.409e^-4	0.65	INTERGENIC
3R	23215296	3R_23215296_SNP [dm3] 3R_27389574_SNP [dm6]	G	C	2.411e^-4	0.65	INTRON side	TF binding site mE1_TFBS_chinmo
2R	12239436	2R_12239436_SNP [dm3] 2R_16351931_SNP [dm6]	A	G	2.417e^-4	0.65	INTERGENIC
3R	16560317	3R_16560317_SNP [dm3] 3R_20734595_SNP [dm6]	G	A	2.419e^-4	0.65	UPSTREAM CR42786 INTERGENIC
2R	18678693	2R_18678693_SNP [dm3] 2R_22791188_SNP [dm6]	C	A	2.422e^-4	0.65	INTRON CG42260
2R	1599351	2R_1599351_SNP [dm3] 2R_5711846_SNP [dm6]	C	A	2.441e^-4	0.653	INTRON ap	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24493368	3R_24493368_SNP [dm3] 3R_28667646_SNP [dm6]	A	G	2.450e^-4	0.653	INTERGENIC
3R	23948597	3R_23948597_SNP [dm3] 3R_28122875_SNP [dm6]	T	A	2.458e^-4	0.653	INTERGENIC
2L	7249973	2L_7249973_SNP [dm3] 2L_7249973_SNP [dm6]	G	A	2.461e^-4	0.653	UPSTREAM Ndae1 DOWNSTREAM CG13786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	4849812	X_4849812_SNP [dm3] X_4955779_SNP [dm6]	A	C	2.461e^-4	0.653	UTR_3_PRIME Ptp4E DOWNSTREAM Ptp4E & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_kn
X	17120601	X_17120601_SNP [dm3] X_17226568_SNP [dm6]	C	T	2.462e^-4	0.653	UTR_5_PRIME CG10598 UPSTREAM CG10598
3R	24154012	3R_24154012_SNP [dm3] 3R_28328290_SNP [dm6]	A	C	2.463e^-4	0.653	UPSTREAM larp INTRON larp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	838432	3L_838432_SNP [dm3] 3L_838432_SNP [dm6]	T	C	2.466e^-4	0.653	SYNONYMOUS_CODING CG13887 UPSTREAM CG13901	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	27527058	3R_27527058_DEL [dm3] 3R_31701336_DEL [dm6]	CCAGTCC	C	2.470e^-4	0.653	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	10838937	2R_10838937_SNP [dm3] 2R_14951432_SNP [dm6]	G	T	2.474e^-4	0.653	UPSTREAM aPKC INTRON aPKC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
2L	3344790	2L_3344790_SNP [dm3] 2L_3344790_SNP [dm6]	G	A	2.476e^-4	0.653	INTRON E23
3L	5463583	3L_5463583_SNP [dm3] 3L_5470483_SNP [dm6]	A	T	2.486e^-4	0.653	INTERGENIC
2L	3626059	2L_3626059_SNP [dm3] 2L_3626059_SNP [dm6]	A	G	2.489e^-4	0.653	SYNONYMOUS_CODING for
2L	22306922	2L_22306922_SNP [dm3] 2L_22306922_SNP [dm6]	G	C	2.491e^-4	0.653	INTERGENIC
3L	7882545	3L_7882545_DEL [dm3] 3L_7889445_DEL [dm6]	TT	T	2.493e^-4	0.653	INTRON CG32365
2L	6227410	2L_6227410_SNP [dm3] 2L_6227410_SNP [dm6]	C	T	2.513e^-4	0.653	DOWNSTREAM Ugt37b1 INTERGENIC
3L	12961217	3L_12961217_SNP [dm3] 3L_12968117_SNP [dm6]	G	A	2.515e^-4	0.653	UPSTREAM Or69a INTERGENIC
3R	7676893	3R_7676893_SNP [dm3] 3R_11851171_SNP [dm6]	C	A	2.518e^-4	0.653	INTRON CG6959	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	9651033	2R_9651033_SNP [dm3] 2R_13763528_SNP [dm6]	T	G	2.520e^-4	0.653	INTERGENIC
2R	19179624	2R_19179624_SNP [dm3] 2R_23292101_SNP [dm6]	G	A	2.523e^-4	0.653	UPSTREAM CR44783 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7304385	2L_7304385_DEL [dm3] 2L_7304385_DEL [dm6]	CTGGAACC	C	2.530e^-4	0.653	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	9698968	2L_9698968_SNP [dm3] 2L_9698968_SNP [dm6]	T	A	2.540e^-4	0.653	START_GAINED Pka-C1 UTR_5_PRIME Pka-C1 UPSTREAM hoip INTRON Pka-C1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	4642611	3L_4642611_SNP [dm3] 3L_4642611_SNP [dm6]	T	C	2.543e^-4	0.653	SYNONYMOUS_CODING axo INTRON axo
2L	13449371	2L_13449371_SNP [dm3] 2L_13449371_SNP [dm6]	C	T	2.551e^-4	0.653	SPLICE_SITE_ACCEPTOR Hsp60D UTR_5_PRIME Hsp60D INTRON CG42784 & 1 other
2L	6516817	2L_6516817_SNP [dm3] 2L_6516817_SNP [dm6]	C	A	2.556e^-4	0.653	INTRON CG31637
X	19599284	X_19599284_SNP [dm3] X_19705251_SNP [dm6]	G	C	2.557e^-4	0.653	SYNONYMOUS_CODING CG14230 UPSTREAM CG14232	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	13831118	X_13831118_DEL [dm3] X_13937085_DEL [dm6]	AA	A	2.558e^-4	0.653	INTRON mamo
3L	7424945	3L_7424945_SNP [dm3] 3L_7431845_SNP [dm6]	G	A	2.560e^-4	0.653	INTRON CG42458
X	8852785	X_8852785_DEL [dm3] X_8958752_DEL [dm6]	GCGGAAAAGTGGG...	G	2.562e^-4	0.653	INTRON rdgA
2R	12238658	2R_12238658_SNP [dm3] 2R_16351153_SNP [dm6]	T	C	2.562e^-4	0.653	INTERGENIC
2R	12238663	2R_12238663_SNP [dm3] 2R_16351158_SNP [dm6]	T	C	2.562e^-4	0.653	INTERGENIC
2R	12238666	2R_12238666_SNP [dm3] 2R_16351161_SNP [dm6]	G	C	2.562e^-4	0.653	INTERGENIC
3R	23904062	3R_23904062_INS [dm3] 3R_28078340_INS [dm6]	A	AA	2.573e^-4	0.653	INTRON CG34362
2R	17474155	2R_17474155_SNP [dm3] 2R_21586650_SNP [dm6]	G	T	2.584e^-4	0.653	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	2690776	3L_2690776_SNP [dm3] 3L_2690776_SNP [dm6]	A	C	2.585e^-4	0.653	INTRON Fife
X	14241131	X_14241131_SNP [dm3] X_14347098_SNP [dm6]	A	G	2.585e^-4	0.653	INTRON dpr8
2L	10269020	2L_10269020_SNP [dm3] 2L_10269020_SNP [dm6]	C	G	2.588e^-4	0.653	SYNONYMOUS_CODING CG4957 DOWNSTREAM CG4953	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk
2L	11683145	2L_11683145_SNP [dm3] 2L_11683145_SNP [dm6]	G	T	2.591e^-4	0.653	INTERGENIC
2L	7680868	2L_7680868_SNP [dm3] 2L_7680868_SNP [dm6]	A	T	2.592e^-4	0.653	SYNONYMOUS_CODING Myo28B1
3R	22815823	3R_22815823_SNP [dm3] 3R_26990101_SNP [dm6]	G	C	2.598e^-4	0.653	UPSTREAM CG31076 INTERGENIC
3R	10180593	3R_10180593_SNP [dm3] 3R_14354871_SNP [dm6]	C	T	2.602e^-4	0.653	INTRON NK7.1
2L	12407783	2L_12407783_DEL [dm3] 2L_12407783_DEL [dm6]	TTA	T	2.606e^-4	0.653	INTRON vir-1
2R	7638337	2R_7638337_SNP [dm3] 2R_11750832_SNP [dm6]	A	T	2.609e^-4	0.653	INTERGENIC
3R	19169951	3R_19169951_SNP [dm3] 3R_23344229_SNP [dm6]	G	A	2.614e^-4	0.653	INTRON pnt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14373512	X_14373512_SNP [dm3] X_14479479_SNP [dm6]	C	G	2.614e^-4	0.653	INTRON CG9411
3R	15128389	3R_15128389_SNP [dm3] 3R_19302667_SNP [dm6]	C	T	2.617e^-4	0.653	DOWNSTREAM Dl INTERGENIC
2L	9915941	2L_9915941_SNP [dm3] 2L_9915941_SNP [dm6]	T	C	2.618e^-4	0.653	DOWNSTREAM Srp54 INTRON yip2
3L	522354	3L_522354_SNP [dm3] 3L_522354_SNP [dm6]	C	T	2.620e^-4	0.653	INTRON klar	TF binding site mE1_TFBS_inv
X	748391	X_748391_SNP [dm3] X_854358_SNP [dm6]	C	A	2.623e^-4	0.653	INTRON CG43867
3L	18412421	3L_18412421_SNP [dm3] 3L_18419321_SNP [dm6]	C	A	2.624e^-4	0.653	INTERGENIC
X	896973	X_896973_SNP [dm3] X_1002940_SNP [dm6]	G	A	2.628e^-4	0.653	INTERGENIC
2R	19236328	2R_19236328_SNP [dm3] 2R_23348805_SNP [dm6]	G	A	2.629e^-4	0.653	INTERGENIC
2L	3974219	2L_3974219_SNP [dm3] 2L_3974219_SNP [dm6]	C	T	2.632e^-4	0.653	INTRON fred	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17198157	3R_17198157_SNP [dm3] 3R_21372435_SNP [dm6]	A	G	2.632e^-4	0.653	UTR_3_PRIME mod_mdg4_ INTRON mod_mdg4_	TF binding site mE1_TFBS_cad
2L	4785058	2L_4785058_SNP [dm3] 2L_4785058_SNP [dm6]	T	A	2.634e^-4	0.653	INTRON CG15630
3R	23947105	3R_23947105_SNP [dm3] 3R_28121383_SNP [dm6]	T	C	2.641e^-4	0.653	INTERGENIC
2R	4926033	2R_4926033_SNP [dm3] 2R_9038528_SNP [dm6]	T	A	2.642e^-4	0.653	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	17354449	3R_17354449_SNP [dm3] 3R_21528727_SNP [dm6]	G	T	2.643e^-4	0.653	DOWNSTREAM CG7956 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	17198158	3R_17198158_SNP [dm3] 3R_21372436_SNP [dm6]	T	C	2.647e^-4	0.653	UTR_3_PRIME mod_mdg4_ INTRON mod_mdg4_	TF binding site mE1_TFBS_cad
3L	12275354	3L_12275354_SNP [dm3] 3L_12282254_SNP [dm6]	A	G	2.647e^-4	0.653	DOWNSTREAM CG10426 INTERGENIC
2R	20813727	2R_20813727_SNP [dm3] 2R_24926204_SNP [dm6]	A	G	2.648e^-4	0.653	INTRON pain
X	5373061	X_5373061_SNP [dm3] X_5479028_SNP [dm6]	G	A	2.648e^-4	0.653	SYNONYMOUS_CODING SPR	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24537604	3R_24537604_SNP [dm3] 3R_28711882_SNP [dm6]	T	C	2.662e^-4	0.654	INTRON htt
X	4562038	X_4562038_SNP [dm3] X_4668005_SNP [dm6]	G	T	2.663e^-4	0.654	SYNONYMOUS_CODING rap
3L	3552914	3L_3552914_SNP [dm3] 3L_3552914_SNP [dm6]	G	A	2.665e^-4	0.654	INTRON Eip63E
3L	838502	3L_838502_SNP [dm3] 3L_838502_SNP [dm6]	A	C	2.668e^-4	0.654	NON_SYNONYMOUS_CODING CG13887 UPSTREAM CG13901	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	12110680	2R_12110680_INS [dm3] 2R_16223175_INS [dm6]	A	ACAAA	2.679e^-4	0.656	UPSTREAM CG7798 DOWNSTREAM CG15706 EXON CR43898
3L	3558527	3L_3558527_SNP [dm3] 3L_3558527_SNP [dm6]	C	T	2.684e^-4	0.656	INTRON Eip63E
X	9944536	X_9944536_SNP [dm3] X_10050503_SNP [dm6]	G	C	2.693e^-4	0.658	UTR_3_PRIME Cht6 DOWNSTREAM Yp2
3L	7426814	3L_7426814_SNP [dm3] 3L_7433714_SNP [dm6]	C	T	2.696e^-4	0.658	UTR_3_PRIME Rac2 DOWNSTREAM Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	6630640	2L_6630640_SNP [dm3] 2L_6630640_SNP [dm6]	G	A	2.704e^-4	0.658	INTRON Oatp26F
X	8781365	X_8781365_DEL [dm3] X_8887332_DEL [dm6]	AG	A	2.709e^-4	0.658	INTRON Moe	TF binding site BDTNP1_TFBS_dl
3R	23203625	3R_23203625_SNP [dm3] 3R_27377903_SNP [dm6]	A	T	2.711e^-4	0.658	UTR_3_PRIME side INTRON side
3R	10637659	3R_10637659_MNP [dm3] 3R_14811937_MNP [dm6]	TGA	CAT	2.711e^-4	0.658	UPSTREAM btsz INTRON btsz	TF binding site mE1_TFBS_inv
2L	8356090	2L_8356090_SNP [dm3] 2L_8356090_SNP [dm6]	T	C	2.716e^-4	0.658	SYNONYMOUS_CODING CG7627 DOWNSTREAM Mur29B	TF binding site mE1_TFBS_cad
3L	3888353	3L_3888353_SNP [dm3] 3L_3888353_SNP [dm6]	T	C	2.721e^-4	0.659	INTERGENIC
3L	21331722	3L_21331722_SNP [dm3] 3L_21338622_SNP [dm6]	G	C	2.737e^-4	0.661	NON_SYNONYMOUS_CODING CG7324 DOWNSTREAM CG7338
2R	13498044	2R_13498044_SNP [dm3] 2R_17610539_SNP [dm6]	C	T	2.742e^-4	0.662	INTRON CG10936
2R	16779183	2R_16779183_DEL [dm3] 2R_20891678_DEL [dm6]	GT	G	2.746e^-4	0.662	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	6470625	3R_6470625_SNP [dm3] 3R_10644903_SNP [dm6]	G	C	2.753e^-4	0.662	EXON CR44018	TF binding site BDTNP1_TFBS_da
3L	20830911	3L_20830911_SNP [dm3] 3L_20837811_SNP [dm6]	T	A	2.762e^-4	0.662	START_GAINED CG13255 UTR_5_PRIME CG13255 UPSTREAM CG13255 & 1 other DOWNSTREAM CG3288
2R	8871614	2R_8871614_SNP [dm3] 2R_12984109_SNP [dm6]	C	T	2.764e^-4	0.662	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12050383	2R_12050383_SNP [dm3] 2R_16162878_SNP [dm6]	C	T	2.765e^-4	0.662	INTRON lbk
2R	17094091	2R_17094091_SNP [dm3] 2R_21206586_SNP [dm6]	G	T	2.773e^-4	0.662	INTRON CG44245 & 1 other
X	2417565	X_2417565_SNP [dm3] X_2523532_SNP [dm6]	G	A	2.777e^-4	0.662	SPLICE_SITE_REGION trol SYNONYMOUS_CODING trol INTRON trol
3R	18189486	3R_18189486_SNP [dm3] 3R_22363764_SNP [dm6]	C	A	2.778e^-4	0.662	NON_SYNONYMOUS_CODING CG7071 UTR_3_PRIME Muted DOWNSTREAM CG5382	TF binding site mE1_TFBS_sens
3L	14828489	3L_14828489_SNP [dm3] 3L_14835389_SNP [dm6]	T	G	2.781e^-4	0.662	INTRON CG17839
X	333962	X_333962_DEL [dm3] X_439929_DEL [dm6]	TT	T	2.783e^-4	0.662	INTRON CG32816	TF binding site mE1_TFBS_HSA
3L	20837204	3L_20837204_SNP [dm3] 3L_20844104_SNP [dm6]	T	C	2.783e^-4	0.662	DOWNSTREAM CG32432 & 1 other INTRON CG11456
2R	5287488	2R_5287488_SNP [dm3] 2R_9399983_SNP [dm6]	C	A	2.790e^-4	0.663	SYNONYMOUS_CODING CG33774 DOWNSTREAM wun & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
3R	24038083	3R_24038083_SNP [dm3] 3R_28212361_SNP [dm6]	G	T	2.798e^-4	0.664	INTRON CG34354	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	22434944	3R_22434944_SNP [dm3] 3R_26609222_SNP [dm6]	C	T	2.800e^-4	0.664	DOWNSTREAM CR44951 INTERGENIC
X	11614677	X_11614677_SNP [dm3] X_11720644_SNP [dm6]	T	A	2.814e^-4	0.665	UTR_5_PRIME Tango10 DOWNSTREAM prtp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	918783	X_918783_SNP [dm3] X_1024750_SNP [dm6]	C	A	2.819e^-4	0.665	INTRON su_w[a]_ & 2 others
2L	22752734	2L_22752734_INS [dm3] 2L_22860002_INS [dm6]	G	GACAATATCTGG...	2.821e^-4	0.665	INTERGENIC
2L	9694739	2L_9694739_SNP [dm3] 2L_9694739_SNP [dm6]	C	T	2.824e^-4	0.665	INTRON Pka-C1
X	3048688	X_3048688_SNP [dm3] X_3154655_SNP [dm6]	G	A	2.828e^-4	0.665	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	21662556	3L_21662556_SNP [dm3] 3L_21669456_SNP [dm6]	G	A	2.831e^-4	0.665	UPSTREAM mir-316 INTERGENIC
2R	3485999	2R_3485999_SNP [dm3] 2R_7598494_SNP [dm6]	A	G	2.835e^-4	0.665	INTRON CG1358	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19318595	2R_19318595_SNP [dm3] 2R_23431072_SNP [dm6]	A	C	2.839e^-4	0.665	INTRON CG9815
3L	15883094	3L_15883094_SNP [dm3] 3L_15889994_SNP [dm6]	C	T	2.840e^-4	0.665	INTRON pHCl
2L	3637835	2L_3637835_SNP [dm3] 2L_3637835_SNP [dm6]	A	T	2.845e^-4	0.665	UPSTREAM mir-4972 INTRON for
3R	12945548	3R_12945548_SNP [dm3] 3R_17119826_SNP [dm6]	G	A	2.849e^-4	0.665	UPSTREAM cher & 1 other INTRON cher	TF binding site BDTNP1_TFBS_dl
X	2238689	X_2238689_SNP [dm3] X_2344656_SNP [dm6]	G	T	2.860e^-4	0.665	UPSTREAM mRpL14 DOWNSTREAM phl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8188134	2L_8188134_DEL [dm3] 2L_8188134_DEL [dm6]	AG	A	2.862e^-4	0.665	INTRON Piezo
2L	22726036	2L_22726036_SNP [dm3] 2L_22833304_SNP [dm6]	C	A	2.863e^-4	0.665	INTERGENIC
2R	6732763	2R_6732763_SNP [dm3] 2R_10845258_SNP [dm6]	G	A	2.868e^-4	0.665	INTRON CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24494670	3R_24494670_SNP [dm3] 3R_28668948_SNP [dm6]	C	T	2.875e^-4	0.665	UPSTREAM CG33346 INTERGENIC
3L	6671087	3L_6671087_INS [dm3] 3L_6677987_INS [dm6]	G	GAATCG	2.876e^-4	0.665	INTERGENIC
X	14684918	X_14684918_SNP [dm3] X_14790885_SNP [dm6]	G	A	2.886e^-4	0.665	SPLICE_SITE_REGION rut INTRON rut	TF binding site mE1_TFBS_cad
3R	19177026	3R_19177026_SNP [dm3] 3R_23351304_SNP [dm6]	T	C	2.886e^-4	0.665	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4610390	3L_4610390_SNP [dm3] 3L_4610390_SNP [dm6]	G	T	2.889e^-4	0.665	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7306699	2L_7306699_SNP [dm3] 2L_7306699_SNP [dm6]	T	C	2.889e^-4	0.665	UPSTREAM wg INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA
X	16370635	X_16370635_SNP [dm3] X_16476602_SNP [dm6]	A	G	2.890e^-4	0.665	INTRON para	TF binding site BDTNP1_TFBS_dl
X	15258048	X_15258048_SNP [dm3] X_15364015_SNP [dm6]	C	T	2.890e^-4	0.665	INTRON acj6
3R	10637673	3R_10637673_SNP [dm3] 3R_14811951_SNP [dm6]	G	A	2.891e^-4	0.665	UPSTREAM btsz INTRON btsz	TF binding site mE1_TFBS_inv
3R	5426172	3R_5426172_SNP [dm3] 3R_9600450_SNP [dm6]	G	T	2.894e^-4	0.665	INTRON CG8312
3L	9962632	3L_9962632_SNP [dm3] 3L_9969532_SNP [dm6]	A	T	2.895e^-4	0.665	INTRON Nc
2R	18685842	2R_18685842_SNP [dm3] 2R_22798337_SNP [dm6]	G	A	2.899e^-4	0.665	UPSTREAM blw & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	8144359	2R_8144359_SNP [dm3] 2R_12256854_SNP [dm6]	A	T	2.907e^-4	0.666	UPSTREAM Vha36-2 INTERGENIC
X	8408285	X_8408285_SNP [dm3] X_8514252_SNP [dm6]	G	T	2.911e^-4	0.666	INTRON CG33181
2L	19029374	2L_19029374_SNP [dm3] 2L_19029374_SNP [dm6]	G	A	2.918e^-4	0.667	SYNONYMOUS_CODING Side	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12379616	3R_12379616_SNP [dm3] 3R_16553894_SNP [dm6]	A	G	2.926e^-4	0.667	INTRON CG42342
2L	3374474	2L_3374474_SNP [dm3] 2L_3374474_SNP [dm6]	A	G	2.928e^-4	0.667	SYNONYMOUS_CODING CG15412	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10357364	3L_10357364_SNP [dm3] 3L_10364264_SNP [dm6]	A	T	2.939e^-4	0.668	UPSTREAM CR44327 & 1 other EXON CR44327	TF binding site BDTNP1_TFBS_dl
3L	15713586	3L_15713586_SNP [dm3] 3L_15720486_SNP [dm6]	G	A	2.942e^-4	0.668	DOWNSTREAM CG42570 INTERGENIC
3R	10180595	3R_10180595_SNP [dm3] 3R_14354873_SNP [dm6]	A	G	2.949e^-4	0.668	INTRON NK7.1
2L	9942941	2L_9942941_SNP [dm3] 2L_9942941_SNP [dm6]	A	C	2.949e^-4	0.668	SYNONYMOUS_CODING CG5853 UTR_3_PRIME CG4619
3R	21124983	3R_21124983_SNP [dm3] 3R_25299261_SNP [dm6]	A	T	2.956e^-4	0.668	INTRON CG31288
X	14787044	X_14787044_SNP [dm3] X_14893011_SNP [dm6]	G	A	2.961e^-4	0.668	INTRON Flo2 & 1 other
2R	13709294	2R_13709294_SNP [dm3] 2R_17821789_SNP [dm6]	G	A	2.963e^-4	0.668	INTRON grh	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi transposable element FlyBase
2R	7127756	2R_7127756_SNP [dm3] 2R_11240251_SNP [dm6]	T	C	2.966e^-4	0.668	UPSTREAM CG13215 INTERGENIC	TF binding site mE1_TFBS_sens
2L	12334917	2L_12334917_SNP [dm3] 2L_12334917_SNP [dm6]	T	A	2.967e^-4	0.668	INTERGENIC
X	5903624	X_5903624_SNP [dm3] X_6009591_SNP [dm6]	G	T	2.969e^-4	0.668	INTRON mab-21
X	13682885	X_13682885_SNP [dm3] X_13788852_SNP [dm6]	C	T	2.976e^-4	0.669	INTRON inaE
3R	24947864	3R_24947864_SNP [dm3] 3R_29122142_SNP [dm6]	C	T	2.996e^-4	0.671	SYNONYMOUS_CODING yem	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	12182468	2L_12182468_INS [dm3] 2L_12182468_INS [dm6]	A	AA	3.002e^-4	0.671	INTRON aret
X	917694	X_917694_SNP [dm3] X_1023661_SNP [dm6]	G	A	3.003e^-4	0.671	INTRON su_w[a]_ & 2 others
X	17982567	X_17982567_SNP [dm3] X_18088534_SNP [dm6]	C	T	3.004e^-4	0.671	UPSTREAM CG7536 DOWNSTREAM CG7206 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	19295175	2L_19295175_DEL [dm3] 2L_19295175_DEL [dm6]	CAATAATAATA...	C	3.008e^-4	0.671	INTERGENIC
2R	13746320	2R_13746320_SNP [dm3] 2R_17858815_SNP [dm6]	C	T	3.011e^-4	0.671	INTRON olf186-F
2L	4688377	2L_4688377_SNP [dm3] 2L_4688377_SNP [dm6]	T	G	3.011e^-4	0.671	SYNONYMOUS_CODING Elba3 DOWNSTREAM CG3251	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	6328989	2R_6328989_SNP [dm3] 2R_10441484_SNP [dm6]	A	G	3.020e^-4	0.673	INTRON Galphao	TF binding site mE1_TFBS_cad
X	17984120	X_17984120_SNP [dm3] X_18090087_SNP [dm6]	G	A	3.027e^-4	0.673	NON_SYNONYMOUS_CODING CG7206	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	16798864	X_16798864_SNP [dm3] X_16904831_SNP [dm6]	C	G	3.028e^-4	0.673	EXON CR44754
2R	7638331	2R_7638331_SNP [dm3] 2R_11750826_SNP [dm6]	T	A	3.044e^-4	0.674	INTERGENIC
3R	16772518	3R_16772518_SNP [dm3] 3R_20946796_SNP [dm6]	C	T	3.045e^-4	0.674	INTERGENIC
X	8736721	X_8736721_SNP [dm3] X_8842688_SNP [dm6]	T	G	3.052e^-4	0.674	INTRON CG12075
3R	23947140	3R_23947140_SNP [dm3] 3R_28121418_SNP [dm6]	G	C	3.057e^-4	0.674	INTERGENIC
3R	23954003	3R_23954003_SNP [dm3] 3R_28128281_SNP [dm6]	C	T	3.067e^-4	0.674	INTERGENIC
X	17249916	X_17249916_SNP [dm3] X_17355883_SNP [dm6]	A	C	3.069e^-4	0.674	INTERGENIC
3L	21761831	3L_21761831_SNP [dm3] 3L_21768731_SNP [dm6]	C	A	3.069e^-4	0.674	INTRON Syn1 & 1 other
3L	15304930	3L_15304930_SNP [dm3] 3L_15311830_SNP [dm6]	C	T	3.069e^-4	0.674	DOWNSTREAM CG7255 INTERGENIC
2L	14478583	2L_14478583_SNP [dm3] 2L_14478583_SNP [dm6]	C	T	3.072e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	24787666	3R_24787666_SNP [dm3] 3R_28961944_SNP [dm6]	G	T	3.079e^-4	0.674	INTRON CG14521
2R	1990806	2R_1990806_SNP [dm3] 2R_6103301_SNP [dm6]	C	A	3.091e^-4	0.674	INTRON EcR	TF binding site mE1_TFBS_Trl
2R	6725136	2R_6725136_SNP [dm3] 2R_10837631_SNP [dm6]	A	G	3.093e^-4	0.674	SYNONYMOUS_CODING CG7686	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7424978	3L_7424978_SNP [dm3] 3L_7431878_SNP [dm6]	G	A	3.095e^-4	0.674	INTRON CG42458
2R	5665561	2R_5665561_SNP [dm3] 2R_9778056_SNP [dm6]	G	A	3.097e^-4	0.674	INTRON CG1688
2L	3133673	2L_3133673_SNP [dm3] 2L_3133673_SNP [dm6]	T	A	3.098e^-4	0.674	INTRON toc
X	4852721	X_4852721_SNP [dm3] X_4958688_SNP [dm6]	G	A	3.107e^-4	0.674	INTRON CR44833
3L	517569	3L_517569_SNP [dm3] 3L_517569_SNP [dm6]	C	T	3.107e^-4	0.674	INTRON klar
2L	4399524	2L_4399524_SNP [dm3] 2L_4399524_SNP [dm6]	T	G	3.110e^-4	0.674	NON_SYNONYMOUS_CODING l_2_k05819
X	13044433	X_13044433_SNP [dm3] X_13150400_SNP [dm6]	C	T	3.110e^-4	0.674	SYNONYMOUS_CODING CG32645
X	13044445	X_13044445_SNP [dm3] X_13150412_SNP [dm6]	C	T	3.110e^-4	0.674	SYNONYMOUS_CODING CG32645
X	5450811	X_5450811_SNP [dm3] X_5556778_SNP [dm6]	A	G	3.121e^-4	0.674	INTRON Vsx2
X	1616118	X_1616118_SNP [dm3] X_1722085_SNP [dm6]	T	G	3.121e^-4	0.674	INTERGENIC
2R	12238595	2R_12238595_SNP [dm3] 2R_16351090_SNP [dm6]	T	A	3.123e^-4	0.674	INTERGENIC
2R	9331719	2R_9331719_SNP [dm3] 2R_13444214_SNP [dm6]	A	G	3.125e^-4	0.674	SYNONYMOUS_CODING cnn INTRON cnn
2L	15284983	2L_15284983_SNP [dm3] 2L_15284983_SNP [dm6]	G	T	3.125e^-4	0.674	UPSTREAM CG15263 INTERGENIC
X	7645245	X_7645245_SNP [dm3] X_7751212_SNP [dm6]	A	G	3.128e^-4	0.674	INTERGENIC
2L	4399744	2L_4399744_SNP [dm3] 2L_4399744_SNP [dm6]	A	T	3.142e^-4	0.677	UTR_3_PRIME l_2_k05819
X	14189427	X_14189427_SNP [dm3] X_14295394_SNP [dm6]	T	C	3.150e^-4	0.677	INTERGENIC
X	12800944	X_12800944_SNP [dm3] X_12906911_SNP [dm6]	G	A	3.155e^-4	0.678	UPSTREAM CG4404 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Ubx
3R	17322342	3R_17322342_SNP [dm3] 3R_21496620_SNP [dm6]	T	G	3.163e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	1237480	2L_1237480_SNP [dm3] 2L_1237480_SNP [dm6]	G	A	3.168e^-4	0.679	INTERGENIC
2L	14478588	2L_14478588_SNP [dm3] 2L_14478588_SNP [dm6]	A	T	3.170e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	17859534	X_17859534_DEL [dm3] X_17965501_DEL [dm6]	TCTTGAAG	T	3.182e^-4	0.679	INTRON Sh
3R	17967655	3R_17967655_SNP [dm3] 3R_22141933_SNP [dm6]	T	C	3.183e^-4	0.679	INTRON SKIP	TF binding site BDTNP1_TFBS_twi
2R	11765545	2R_11765545_SNP [dm3] 2R_15878040_SNP [dm6]	T	G	3.183e^-4	0.679	INTRON sli
2L	8188139	2L_8188139_SNP [dm3] 2L_8188139_SNP [dm6]	C	A	3.186e^-4	0.679	INTRON Piezo
X	14789111	X_14789111_SNP [dm3] X_14895078_SNP [dm6]	T	C	3.188e^-4	0.679	INTRON Flo2 & 1 other
3L	3554030	3L_3554030_SNP [dm3] 3L_3554030_SNP [dm6]	C	T	3.192e^-4	0.679	INTRON Eip63E
3R	20857921	3R_20857921_SNP [dm3] 3R_25032199_SNP [dm6]	T	G	3.200e^-4	0.68	INTRON Smg6	TF binding site mE1_TFBS_sens
3R	15581176	3R_15581176_SNP [dm3] 3R_19755454_SNP [dm6]	A	G	3.218e^-4	0.681	INTRON GluClalpha
2R	13997978	2R_13997978_SNP [dm3] 2R_18110473_SNP [dm6]	A	T	3.228e^-4	0.681	UTR_3_PRIME CG34196
3L	9229284	3L_9229284_SNP [dm3] 3L_9236184_SNP [dm6]	T	A	3.230e^-4	0.681	SYNONYMOUS_CODING CG4483
2R	13087223	2R_13087223_DEL [dm3] 2R_17199718_DEL [dm6]	CCAGC	A	3.232e^-4	0.681	INTERGENIC
3R	24955252	3R_24955252_SNP [dm3] 3R_29129530_SNP [dm6]	G	A	3.232e^-4	0.681	SPLICE_SITE_REGION dgt6 SYNONYMOUS_CODING dgt6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	21140213	3R_21140213_SNP [dm3] 3R_25314491_SNP [dm6]	C	G	3.235e^-4	0.681	UPSTREAM CG31087 DOWNSTREAM CG10559 INTERGENIC
3L	21728888	3L_21728888_SNP [dm3] 3L_21735788_SNP [dm6]	C	T	3.238e^-4	0.681	UPSTREAM CR43888 DOWNSTREAM CG14573 INTERGENIC
2R	1785417	2R_1785417_DEL [dm3] 2R_5897912_DEL [dm6]	AGCGCTCCA	A	3.238e^-4	0.681	INTRON CG43366
3L	10914600	3L_10914600_SNP [dm3] 3L_10921500_SNP [dm6]	C	T	3.242e^-4	0.681	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	16796743	3R_16796743_SNP [dm3] 3R_20971021_SNP [dm6]	C	A	3.247e^-4	0.681	INTRON Atpalpha
2R	6200652	2R_6200652_SNP [dm3] 2R_10313147_SNP [dm6]	A	G	3.248e^-4	0.681	UPSTREAM Ndg INTERGENIC
2R	10676783	2R_10676783_SNP [dm3] 2R_14789278_SNP [dm6]	A	G	3.248e^-4	0.681	INTRON kn	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	4478034	2R_4478034_SNP [dm3] 2R_8590529_SNP [dm6]	A	C	3.259e^-4	0.681	UTR_5_PRIME CG14752	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	19295261	2L_19295261_SNP [dm3] 2L_19295261_SNP [dm6]	G	T	3.260e^-4	0.681	INTERGENIC
3L	1007318	3L_1007318_SNP [dm3] 3L_1007318_SNP [dm6]	G	A	3.261e^-4	0.681	SYNONYMOUS_CODING trio INTRON trio
2L	5461748	2L_5461748_SNP [dm3] 2L_5461748_SNP [dm6]	A	C	3.276e^-4	0.683	UTR_5_PRIME mid	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_Ubx
3L	2387371	3L_2387371_INS [dm3] 3L_2387371_INS [dm6]	G	GT	3.276e^-4	0.683	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17815571	2R_17815571_SNP [dm3] 2R_21928066_SNP [dm6]	T	A	3.303e^-4	0.684	INTRON Fili
2R	1601950	2R_1601950_SNP [dm3] 2R_5714445_SNP [dm6]	C	T	3.304e^-4	0.684	INTRON ap
3R	10180585	3R_10180585_SNP [dm3] 3R_14354863_SNP [dm6]	A	C	3.305e^-4	0.684	INTRON NK7.1
2L	7305346	2L_7305346_SNP [dm3] 2L_7305346_SNP [dm6]	A	T	3.311e^-4	0.684	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8361439	2L_8361439_SNP [dm3] 2L_8361439_SNP [dm6]	G	A	3.312e^-4	0.684	INTRON CG7627	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
X	19866719	X_19866719_SNP [dm3] X_19972686_SNP [dm6]	G	A	3.312e^-4	0.684	INTERGENIC
3L	10509585	3L_10509585_SNP [dm3] 3L_10516485_SNP [dm6]	T	C	3.314e^-4	0.684	INTRON A2bp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	25596834	3R_25596834_SNP [dm3] 3R_29771112_SNP [dm6]	G	A	3.315e^-4	0.684	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	5664543	X_5664543_DEL [dm3] X_5770510_DEL [dm6]	TT	T	3.318e^-4	0.684	UTR_5_PRIME CG3097 INTRON CG42699	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3L	3140826	3L_3140826_SNP [dm3] 3L_3140826_SNP [dm6]	A	G	3.320e^-4	0.684	UPSTREAM CG11537 INTRON CG11537
2L	6374110	2L_6374110_SNP [dm3] 2L_6374110_SNP [dm6]	G	A	3.338e^-4	0.687	SYNONYMOUS_CODING slam	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	22307292	2L_22307292_SNP [dm3] 2L_22307292_SNP [dm6]	G	A	3.338e^-4	0.687	INTERGENIC
2L	8583420	2L_8583420_SNP [dm3] 2L_8583420_SNP [dm6]	A	G	3.345e^-4	0.687	INTRON Sema-1a
X	7642779	X_7642779_SNP [dm3] X_7748746_SNP [dm6]	A	G	3.353e^-4	0.688	INTERGENIC
2L	10443038	2L_10443038_SNP [dm3] 2L_10443038_SNP [dm6]	T	A	3.363e^-4	0.689	UPSTREAM CR45375 INTRON loh	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	5391798	2L_5391798_SNP [dm3] 2L_5391798_SNP [dm6]	T	C	3.377e^-4	0.691	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
X	9735251	X_9735251_SNP [dm3] X_9841218_SNP [dm6]	G	T	3.382e^-4	0.692	INTRON CG32698
2R	7276312	2R_7276312_INS [dm3] 2R_11388807_INS [dm6]	T	TT	3.399e^-4	0.694	UPSTREAM CG30022 INTRON sprt
2R	10881434	2R_10881434_SNP [dm3] 2R_14993929_SNP [dm6]	C	T	3.400e^-4	0.694	UPSTREAM CR43830 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	5746891	2L_5746891_SNP [dm3] 2L_5746891_SNP [dm6]	G	C	3.404e^-4	0.694	SYNONYMOUS_CODING CG11029 INTRON CG11030	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16360848	X_16360848_SNP [dm3] X_16466815_SNP [dm6]	A	G	3.412e^-4	0.694	INTRON para
2L	5446068	2L_5446068_SNP [dm3] 2L_5446068_SNP [dm6]	A	T	3.416e^-4	0.694	INTERGENIC
2R	5287494	2R_5287494_SNP [dm3] 2R_9399989_SNP [dm6]	C	G	3.421e^-4	0.694	SYNONYMOUS_CODING CG33774 DOWNSTREAM wun & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
3R	19340495	3R_19340495_SNP [dm3] 3R_23514773_SNP [dm6]	T	C	3.432e^-4	0.694	NON_SYNONYMOUS_CODING Irk2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2488888	3L_2488888_SNP [dm3] 3L_2488888_SNP [dm6]	A	T	3.438e^-4	0.694	SPLICE_SITE_REGION CG1146 UTR_5_PRIME CG1146 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8997777	2L_8997777_SNP [dm3] 2L_8997777_SNP [dm6]	G	A	3.440e^-4	0.694	SYNONYMOUS_CODING CG18661 UPSTREAM alien & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2R	15393730	2R_15393730_SNP [dm3] 2R_19506225_SNP [dm6]	C	G	3.446e^-4	0.694	DOWNSTREAM tRNA:H:56E & 1 other INTERGENIC
2L	6105650	2L_6105650_SNP [dm3] 2L_6105650_SNP [dm6]	G	A	3.447e^-4	0.694	INTRON stai
2L	7921566	2L_7921566_SNP [dm3] 2L_7921566_SNP [dm6]	G	A	3.453e^-4	0.694	INTRON Snoo
3R	22213242	3R_22213242_SNP [dm3] 3R_26387520_SNP [dm6]	T	G	3.455e^-4	0.694	INTERGENIC
3R	16510545	3R_16510545_SNP [dm3] 3R_20684823_SNP [dm6]	G	T	3.457e^-4	0.694	INTERGENIC
3R	17780986	3R_17780986_SNP [dm3] 3R_21955264_SNP [dm6]	G	C	3.468e^-4	0.694	INTRON Eip93F
3L	13398737	3L_13398737_DEL [dm3] 3L_13405637_DEL [dm6]	GGG	G	3.471e^-4	0.694	INTERGENIC
2L	15156161	2L_15156161_SNP [dm3] 2L_15156161_SNP [dm6]	G	A	3.472e^-4	0.694	INTERGENIC
2L	19058973	2L_19058973_SNP [dm3] 2L_19058973_SNP [dm6]	A	T	3.472e^-4	0.694	UPSTREAM Phlpp DOWNSTREAM CG10492 INTERGENIC
3R	22131742	3R_22131742_SNP [dm3] 3R_26306020_SNP [dm6]	T	C	3.475e^-4	0.694	INTERGENIC
X	13039651	X_13039651_SNP [dm3] X_13145618_SNP [dm6]	T	A	3.483e^-4	0.694	INTRON CG32645
2L	6528540	2L_6528540_SNP [dm3] 2L_6528540_SNP [dm6]	A	T	3.486e^-4	0.694	INTRON eya	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18673048	2R_18673048_SNP [dm3] 2R_22785543_SNP [dm6]	G	T	3.488e^-4	0.694	DOWNSTREAM CG30270 INTRON CG42260
3R	26068329	3R_26068329_SNP [dm3] 3R_30242607_SNP [dm6]	A	T	3.505e^-4	0.694	SPLICE_SITE_REGION CG9737 INTRON CG9737
3L	12469155	3L_12469155_SNP [dm3] 3L_12476055_SNP [dm6]	C	T	3.516e^-4	0.694	SYNONYMOUS_CODING CG10663	TF binding site mE1_TFBS_cad
2R	8329003	2R_8329003_SNP [dm3] 2R_12441498_SNP [dm6]	T	A	3.525e^-4	0.694	UPSTREAM CG30334 INTRON Dyb
2R	15075647	2R_15075647_SNP [dm3] 2R_19188142_SNP [dm6]	T	A	3.534e^-4	0.694	INTRON hppy	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	5691884	2L_5691884_SNP [dm3] 2L_5691884_SNP [dm6]	T	A	3.536e^-4	0.694	UPSTREAM CR44820 DOWNSTREAM CR44819 INTERGENIC
3L	14828008	3L_14828008_SNP [dm3] 3L_14834908_SNP [dm6]	C	G	3.537e^-4	0.694	INTRON CG17839
X	14654505	X_14654505_SNP [dm3] X_14760472_SNP [dm6]	G	C	3.538e^-4	0.694	INTRON CG15890
2R	9648979	2R_9648979_SNP [dm3] 2R_13761474_SNP [dm6]	T	C	3.542e^-4	0.694	INTERGENIC	insulator Insulator_Class_II.mE01
X	7648418	X_7648418_SNP [dm3] X_7754385_SNP [dm6]	A	T	3.543e^-4	0.694	INTERGENIC
3R	23655064	3R_23655064_SNP [dm3] 3R_27829342_SNP [dm6]	C	T	3.544e^-4	0.694	INTRON CG34353
3R	2901554	3R_2901554_INS [dm3] 3R_7075832_INS [dm6]	T	TCTCTCT	3.545e^-4	0.694	UPSTREAM CG1943 INTRON CG1943	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15189043	2R_15189043_SNP [dm3] 2R_19301538_SNP [dm6]	C	T	3.553e^-4	0.694	INTRON Tab2	TF binding site mE1_TFBS_inv
2R	6893971	2R_6893971_INS [dm3] 2R_11006466_INS [dm6]	T	TT	3.554e^-4	0.694	INTRON luna
2L	4661546	2L_4661546_SNP [dm3] 2L_4661546_SNP [dm6]	A	G	3.560e^-4	0.694	INTERGENIC
3L	4352461	3L_4352461_SNP [dm3] 3L_4352461_SNP [dm6]	A	G	3.563e^-4	0.694	INTRON Cip4
3L	14364821	3L_14364821_SNP [dm3] 3L_14371721_SNP [dm6]	G	T	3.564e^-4	0.694	INTERGENIC
2R	8522617	2R_8522617_SNP [dm3] 2R_12635112_SNP [dm6]	C	G	3.565e^-4	0.694	SYNONYMOUS_CODING CG33671 UTR_3_PRIME CG33672 DOWNSTREAM spt4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	17911637	2R_17911637_SNP [dm3] 2R_22024132_SNP [dm6]	C	T	3.567e^-4	0.694	INTRON CG34370
X	18435571	X_18435571_SNP [dm3] X_18541538_SNP [dm6]	G	A	3.569e^-4	0.694	INTRON Bx
3R	6643247	3R_6643247_SNP [dm3] 3R_10817525_SNP [dm6]	T	G	3.571e^-4	0.694	DOWNSTREAM CG4089 INTERGENIC
2R	4489841	2R_4489841_SNP [dm3] 2R_8602336_SNP [dm6]	T	A	3.581e^-4	0.694	INTRON rgr
2R	4929329	2R_4929329_SNP [dm3] 2R_9041824_SNP [dm6]	A	G	3.586e^-4	0.694	DOWNSTREAM PPO2 INTRON Ance-4	TF binding site mE1_TFBS_chinmo
2R	4935615	2R_4935615_SNP [dm3] 2R_9048110_SNP [dm6]	G	A	3.586e^-4	0.694	INTRON CG13743
3R	1764270	3R_1764270_INS [dm3] 3R_5938548_INS [dm6]	T	TC	3.588e^-4	0.694	INTRON CG34113
3R	6226752	3R_6226752_SNP [dm3] 3R_10401030_SNP [dm6]	G	A	3.590e^-4	0.694	UPSTREAM mthl11 DOWNSTREAM cwo INTERGENIC
2R	19237949	2R_19237949_SNP [dm3] 2R_23350426_SNP [dm6]	C	G	3.591e^-4	0.694	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	6436010	X_6436010_SNP [dm3] X_6541977_SNP [dm6]	A	G	3.593e^-4	0.694	INTRON CG34417
2R	18670399	2R_18670399_SNP [dm3] 2R_22782894_SNP [dm6]	G	T	3.596e^-4	0.694	INTRON CG42260
2L	3554240	2L_3554240_SNP [dm3] 2L_3554240_SNP [dm6]	C	A	3.597e^-4	0.694	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11305989	2L_11305989_SNP [dm3] 2L_11305989_SNP [dm6]	G	C	3.597e^-4	0.694	INTERGENIC	TF binding site mE1_TFBS_cad
3R	10637601	3R_10637601_SNP [dm3] 3R_14811879_SNP [dm6]	A	G	3.598e^-4	0.694	UPSTREAM btsz INTRON btsz	TF binding site mE1_TFBS_inv
X	4604680	X_4604680_SNP [dm3] X_4710647_SNP [dm6]	T	C	3.604e^-4	0.694	INTRON Proc-R
X	4604899	X_4604899_SNP [dm3] X_4710866_SNP [dm6]	T	G	3.604e^-4	0.694	INTRON Proc-R
X	21507658	X_21507658_SNP [dm3] X_21636631_SNP [dm6]	A	T	3.608e^-4	0.694	INTERGENIC	transposable element FlyBase
2R	10881436	2R_10881436_SNP [dm3] 2R_14993931_SNP [dm6]	A	T	3.611e^-4	0.694	UPSTREAM CR43830 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	6597722	2L_6597722_SNP [dm3] 2L_6597722_SNP [dm6]	T	A	3.614e^-4	0.694	INTRON CG11319
3R	18166159	3R_18166159_SNP [dm3] 3R_22340437_SNP [dm6]	T	A	3.615e^-4	0.694	UPSTREAM CG5388 DOWNSTREAM CG5386 INTERGENIC
3L	20825161	3L_20825161_SNP [dm3] 3L_20832061_SNP [dm6]	C	T	3.618e^-4	0.694	INTRON Pka-R1
3R	14903320	3R_14903320_SNP [dm3] 3R_19077598_SNP [dm6]	G	A	3.625e^-4	0.695	INTRON cdi
3L	10753444	3L_10753444_SNP [dm3] 3L_10760344_SNP [dm6]	A	T	3.637e^-4	0.695	INTERGENIC
2R	11276519	2R_11276519_SNP [dm3] 2R_15389014_SNP [dm6]	G	C	3.640e^-4	0.695	INTERGENIC
3R	19177404	3R_19177404_SNP [dm3] 3R_23351682_SNP [dm6]	G	A	3.645e^-4	0.695	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad
X	3726032	X_3726032_SNP [dm3] X_3831999_SNP [dm6]	T	C	3.647e^-4	0.695	DOWNSTREAM CG2901 INTRON ec	TF binding site BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3L	7328475	3L_7328475_INS [dm3] 3L_7335375_INS [dm6]	A	AGTA	3.651e^-4	0.695	UPSTREAM CG43780 & 1 other DOWNSTREAM eco INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	4851839	3R_4851839_SNP [dm3] 3R_9026117_SNP [dm6]	G	A	3.655e^-4	0.695	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	20827712	X_20827712_SNP [dm3] X_20956685_SNP [dm6]	A	T	3.656e^-4	0.695	INTERGENIC	transposable element FlyBase
2R	19793598	2R_19793598_SNP [dm3] 2R_23906075_SNP [dm6]	G	A	3.661e^-4	0.695	SYNONYMOUS_CODING Nap1 DOWNSTREAM CG13562	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	19480836	3L_19480836_DEL [dm3] 3L_19487736_DEL [dm6]	CTTCTGCAGT	A	3.666e^-4	0.695	UTR_5_PRIME CG32212 INTRON pncr009:3L EXON pncr009:3L
2L	9739842	2L_9739842_SNP [dm3] 2L_9739842_SNP [dm6]	A	G	3.667e^-4	0.695	INTRON Nckx30C
3L	14828501	3L_14828501_SNP [dm3] 3L_14835401_SNP [dm6]	C	T	3.667e^-4	0.695	INTRON CG17839
3R	27191253	3R_27191253_SNP [dm3] 3R_31365531_SNP [dm6]	G	A	3.672e^-4	0.696	INTRON CG34347
2R	9290441	2R_9290441_SNP [dm3] 2R_13402936_SNP [dm6]	T	A	3.684e^-4	0.697	INTERGENIC
2R	6731992	2R_6731992_SNP [dm3] 2R_10844487_SNP [dm6]	G	A	3.687e^-4	0.697	UPSTREAM CG30015 INTRON CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23510785	3R_23510785_SNP [dm3] 3R_27685063_SNP [dm6]	G	T	3.700e^-4	0.699	UPSTREAM CG12880 DOWNSTREAM CG31055 INTERGENIC
2R	7249410	2R_7249410_SNP [dm3] 2R_11361905_SNP [dm6]	A	G	3.707e^-4	0.699	SYNONYMOUS_CODING Gr47b DOWNSTREAM san	TF binding site mE1_TFBS_sens
3L	2580460	3L_2580460_SNP [dm3] 3L_2580460_SNP [dm6]	G	A	3.713e^-4	0.699	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18997956	X_18997956_SNP [dm3] X_19103923_SNP [dm6]	A	C	3.714e^-4	0.699	INTERGENIC
2R	8833359	2R_8833359_SNP [dm3] 2R_12945854_SNP [dm6]	G	A	3.720e^-4	0.7	INTRON Mdr49	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23893065	3R_23893065_SNP [dm3] 3R_28067343_SNP [dm6]	C	T	3.737e^-4	0.702	INTRON CG34362
3R	15589760	3R_15589760_SNP [dm3] 3R_19764038_SNP [dm6]	T	C	3.746e^-4	0.703	INTRON GluClalpha
2R	15123396	2R_15123396_SNP [dm3] 2R_19235891_SNP [dm6]	G	A	3.751e^-4	0.703	SYNONYMOUS_CODING cora	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

Survival_Radiation phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results