DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.485e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.02137

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.3536	0.0688

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2409 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	24716095	3R_24716095_SNP [dm3] 3R_28890373_SNP [dm6]	A	G	1.508e^-6	0.426	INTRON Doa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	11855092	3R_11855092_SNP [dm3] 3R_16029370_SNP [dm6]	A	T	1.525e^-6	0.426	INTRON pnr	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	26580807	3R_26580807_INS [dm3] 3R_30755085_INS [dm6]	T	TGAAATT	1.535e^-6	0.426	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	794788	2L_794788_SNP [dm3] 2L_794788_SNP [dm6]	G	C	1.567e^-6	0.426	INTERGENIC
3R	14455328	3R_14455328_INS [dm3] 3R_18629606_INS [dm6]	A	AGT	1.754e^-6	0.426	UTR_3_PRIME CG14301 INTRON qin
3R	11855047	3R_11855047_SNP [dm3] 3R_16029325_SNP [dm6]	T	C	1.910e^-6	0.426	INTRON pnr	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	14405079	3R_14405079_DEL [dm3] 3R_18579357_DEL [dm6]	GT	A	2.285e^-6	0.426	INTRON fray & 1 other
3R	25288112	3R_25288112_SNP [dm3] 3R_29462390_SNP [dm6]	A	C	2.338e^-6	0.426	NON_SYNONYMOUS_CODING Ptp99A INTRON Ptp99A	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24708824	3R_24708824_SNP [dm3] 3R_28883102_SNP [dm6]	T	C	2.343e^-6	0.426	UPSTREAM CG14526 DOWNSTREAM CG14527 INTRON CG33203
3L	16755086	3L_16755086_INS [dm3] 3L_16761986_INS [dm6]	C	CA	2.475e^-6	0.426	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	20211750	3L_20211750_SNP [dm3] 3L_20218650_SNP [dm6]	C	T	2.532e^-6	0.426	NON_SYNONYMOUS_CODING CG6933	TF binding site mE1_TFBS_cad
3R	14405162	3R_14405162_SNP [dm3] 3R_18579440_SNP [dm6]	C	G	3.280e^-6	0.426	INTRON fray & 1 other
3R	14405167	3R_14405167_SNP [dm3] 3R_18579445_SNP [dm6]	C	G	3.280e^-6	0.426	INTRON fray & 1 other
2L	14394854	2L_14394854_SNP [dm3] 2L_14394854_SNP [dm6]	T	A	3.316e^-6	0.426	INTRON elB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14394849	2L_14394849_DEL [dm3] 2L_14394849_DEL [dm6]	AT	A	3.406e^-6	0.426	INTRON elB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24716130	3R_24716130_SNP [dm3] 3R_28890408_SNP [dm6]	T	C	5.029e^-6	0.568	INTRON Doa	TF binding site BDTNP1_TFBS_dl
2L	12969392	2L_12969392_SNP [dm3] 2L_12969392_SNP [dm6]	G	T	5.148e^-6	0.568	INTERGENIC
3R	14881354	3R_14881354_SNP [dm3] 3R_19055632_SNP [dm6]	T	C	5.643e^-6	0.579	INTRON cdi	TF binding site BDTNP1_TFBS_twi
2L	4784866	2L_4784866_SNP [dm3] 2L_4784866_SNP [dm6]	A	G	5.919e^-6	0.579	INTRON CG15630
3L	15270784	3L_15270784_SNP [dm3] 3L_15277684_SNP [dm6]	C	T	6.404e^-6	0.579	INTERGENIC
3R	24716074	3R_24716074_SNP [dm3] 3R_28890352_SNP [dm6]	C	A	6.575e^-6	0.579	INTRON Doa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	19248215	3R_19248215_SNP [dm3] 3R_23422493_SNP [dm6]	T	C	6.929e^-6	0.579	INTRON CG4374	TF binding site BDTNP1_TFBS_da
2R	20200009	2R_20200009_SNP [dm3] 2R_24312486_SNP [dm6]	T	A	7.293e^-6	0.579	UTR_3_PRIME betaTub60D	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	25249837	3R_25249837_INS [dm3] 3R_29424115_INS [dm6]	G	GAGCGCGAG	7.414e^-6	0.579	INTRON Ptp99A
X	6628402	X_6628402_SNP [dm3] X_6734369_SNP [dm6]	G	C	8.255e^-6	0.584	INTRON CG3168 & 1 other
2R	20200155	2R_20200155_SNP [dm3] 2R_24312632_SNP [dm6]	C	T	8.533e^-6	0.584	UTR_3_PRIME betaTub60D	TF binding site mE1_TFBS_HSA
2R	20200176	2R_20200176_SNP [dm3] 2R_24312653_SNP [dm6]	C	T	8.533e^-6	0.584	UTR_3_PRIME betaTub60D
3R	19248112	3R_19248112_SNP [dm3] 3R_23422390_SNP [dm6]	T	C	8.718e^-6	0.584	INTRON CG4374	TF binding site BDTNP1_TFBS_da
2L	8085141	2L_8085141_SNP [dm3] 2L_8085141_SNP [dm6]	T	A	9.662e^-6	0.625	INTRON Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
3L	2330998	3L_2330998_SNP [dm3] 3L_2330998_SNP [dm6]	G	C	1.013e^-5	0.633	INTRON MsR1
2R	20181697	2R_20181697_SNP [dm3] 2R_24294174_SNP [dm6]	T	C	1.069e^-5	0.647	UTR_5_PRIME CG3394 UPSTREAM mir-4985	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	18884313	2L_18884313_SNP [dm3] 2L_18884313_SNP [dm6]	G	C	1.210e^-5	0.69	INTERGENIC
3R	26579199	3R_26579199_SNP [dm3] 3R_30753477_SNP [dm6]	T	G	1.224e^-5	0.69	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25330405	3R_25330405_DEL [dm3] 3R_29504683_DEL [dm6]	ACTATTGTTATTA...	A	1.373e^-5	0.69	UPSTREAM Trc8 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	11478577	3L_11478577_SNP [dm3] 3L_11485477_SNP [dm6]	C	T	1.521e^-5	0.69	INTERGENIC
2R	14715919	2R_14715919_SNP [dm3] 2R_18828414_SNP [dm6]	C	A	1.529e^-5	0.69	INTRON CG15097
3R	25604497	3R_25604497_SNP [dm3] 3R_29778775_SNP [dm6]	G	C	1.604e^-5	0.69	DOWNSTREAM fig INTRON kay	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	8085319	2L_8085319_SNP [dm3] 2L_8085319_SNP [dm6]	T	A	1.617e^-5	0.69	INTRON Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
3L	43682	3L_43682_SNP [dm3] 3L_43682_SNP [dm6]	T	G	1.702e^-5	0.69	INTERGENIC
X	7146780	X_7146780_SNP [dm3] X_7252747_SNP [dm6]	C	A	1.742e^-5	0.69	INTRON CR44357	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2R	15465933	2R_15465933_SNP [dm3] 2R_19578428_SNP [dm6]	A	C	1.784e^-5	0.69	INTRON sm
3R	24817518	3R_24817518_SNP [dm3] 3R_28991796_SNP [dm6]	T	A	1.857e^-5	0.69	INTERGENIC
3L	2311920	3L_2311920_SNP [dm3] 3L_2311920_SNP [dm6]	A	C	1.857e^-5	0.69	INTERGENIC
3R	24733936	3R_24733936_SNP [dm3] 3R_28908214_SNP [dm6]	G	A	1.995e^-5	0.69	NON_SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8089251	2L_8089251_SNP [dm3] 2L_8089251_SNP [dm6]	C	A	1.996e^-5	0.69	UTR_5_PRIME Bsg INTRON Bsg	TF binding site BDTNP1_TFBS_dl
3R	25340300	3R_25340300_SNP [dm3] 3R_29514578_SNP [dm6]	G	T	2.003e^-5	0.69	INTERGENIC
X	7037140	X_7037140_SNP [dm3] X_7143107_SNP [dm6]	C	A	2.005e^-5	0.69	INTRON CG9650
2L	13489765	2L_13489765_SNP [dm3] 2L_13489765_SNP [dm6]	T	G	2.178e^-5	0.69	INTRON CG42784	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4685082	2L_4685082_SNP [dm3] 2L_4685082_SNP [dm6]	C	T	2.210e^-5	0.69	NON_SYNONYMOUS_CODING CG11929 UPSTREAM Bsg25A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4685083	2L_4685083_SNP [dm3] 2L_4685083_SNP [dm6]	A	C	2.210e^-5	0.69	SYNONYMOUS_CODING CG11929 UPSTREAM Bsg25A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	44987	3L_44987_DEL [dm3] 3L_44987_DEL [dm6]	AAATAAATAAAA...	CCAATATT	2.250e^-5	0.69	INTERGENIC
3R	10866242	3R_10866242_SNP [dm3] 3R_15040520_SNP [dm6]	G	A	2.267e^-5	0.69	DOWNSTREAM CR44944 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	4685090	2L_4685090_SNP [dm3] 2L_4685090_SNP [dm6]	C	A	2.420e^-5	0.69	NON_SYNONYMOUS_CODING CG11929 UPSTREAM Bsg25A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15521032	3L_15521032_SNP [dm3] 3L_15527932_SNP [dm6]	G	T	2.457e^-5	0.69	NON_SYNONYMOUS_CODING CG42728 UPSTREAM CG42729 DOWNSTREAM obst-H	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	14003613	2L_14003613_SNP [dm3] 2L_14003613_SNP [dm6]	A	T	2.529e^-5	0.69	INTERGENIC
3L	3296455	3L_3296455_SNP [dm3] 3L_3296455_SNP [dm6]	C	T	2.542e^-5	0.69	SYNONYMOUS_CODING CG12009	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	10024796	2L_10024796_SNP [dm3] 2L_10024796_SNP [dm6]	C	T	2.571e^-5	0.69	INTERGENIC
2L	1215735	2L_1215735_SNP [dm3] 2L_1215735_SNP [dm6]	A	G	2.654e^-5	0.69	UPSTREAM CR45346 INTERGENIC
3R	17234196	3R_17234196_SNP [dm3] 3R_21408474_SNP [dm6]	T	C	2.688e^-5	0.69	UPSTREAM CheB93b DOWNSTREAM CheB93a INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	13360058	2L_13360058_SNP [dm3] 2L_13360058_SNP [dm6]	C	T	2.694e^-5	0.69	NON_SYNONYMOUS_CODING CG9377	TF binding site mE1_TFBS_cad
X	13140901	X_13140901_SNP [dm3] X_13246868_SNP [dm6]	T	G	2.704e^-5	0.69	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2R	15260223	2R_15260223_SNP [dm3] 2R_19372718_SNP [dm6]	A	T	2.704e^-5	0.69	INTRON CG9416	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	10435265	3R_10435265_SNP [dm3] 3R_14609543_SNP [dm6]	T	C	2.720e^-5	0.69	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9825479	2L_9825479_SNP [dm3] 2L_9825479_SNP [dm6]	A	G	2.745e^-5	0.69	INTRON nAChRalpha6
3L	15293218	3L_15293218_SNP [dm3] 3L_15300118_SNP [dm6]	T	C	2.760e^-5	0.69	SPLICE_SITE_REGION Best4 DOWNSTREAM Best3 INTRON Best4
2L	8085493	2L_8085493_DEL [dm3] 2L_8085493_DEL [dm6]	CAGTC	C	2.794e^-5	0.69	INTRON Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	21013010	3R_21013010_SNP [dm3] 3R_25187288_SNP [dm6]	C	T	2.800e^-5	0.69	INTRON lobo & 1 other	TF binding site BDTNP1_TFBS_dl
3L	13534518	3L_13534518_SNP [dm3] 3L_13541418_SNP [dm6]	T	A	2.814e^-5	0.69	INTRON bru-3
3R	26582897	3R_26582897_SNP [dm3] 3R_30757175_SNP [dm6]	G	A	2.835e^-5	0.69	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	1773885	3R_1773885_SNP [dm3] 3R_5948163_SNP [dm6]	T	C	2.841e^-5	0.69	INTRON CG34113
2R	16685844	2R_16685844_SNP [dm3] 2R_20798339_SNP [dm6]	C	T	2.845e^-5	0.69	INTERGENIC
2L	14428628	2L_14428628_SNP [dm3] 2L_14428628_SNP [dm6]	C	A	2.862e^-5	0.69	EXON CR44732	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	9131810	3L_9131810_SNP [dm3] 3L_9138710_SNP [dm6]	T	A	2.932e^-5	0.69	INTRON nwk
3L	5286493	3L_5286493_INS [dm3] 3L_5293393_INS [dm6]	G	GGG	2.969e^-5	0.69	INTERGENIC
3L	5286843	3L_5286843_SNP [dm3] 3L_5293743_SNP [dm6]	G	C	2.977e^-5	0.69	INTERGENIC
3L	45029	3L_45029_SNP [dm3] 3L_45029_SNP [dm6]	G	T	2.993e^-5	0.69	INTERGENIC
3L	6372128	3L_6372128_SNP [dm3] 3L_6379028_SNP [dm6]	G	A	3.092e^-5	0.69	INTERGENIC
2R	10969602	2R_10969602_SNP [dm3] 2R_15082097_SNP [dm6]	A	T	3.161e^-5	0.69	INTERGENIC
3L	6372130	3L_6372130_SNP [dm3] 3L_6379030_SNP [dm6]	A	T	3.161e^-5	0.69	INTERGENIC
X	7890335	X_7890335_SNP [dm3] X_7996302_SNP [dm6]	C	T	3.173e^-5	0.69	INTRON Tbh	TF binding site mE1_TFBS_sbb
2L	18884296	2L_18884296_SNP [dm3] 2L_18884296_SNP [dm6]	G	A	3.296e^-5	0.69	INTERGENIC
3L	2331004	3L_2331004_SNP [dm3] 3L_2331004_SNP [dm6]	A	G	3.342e^-5	0.69	INTRON MsR1
3R	14879964	3R_14879964_DEL [dm3] 3R_19054242_DEL [dm6]	CAG	C	3.345e^-5	0.69	INTRON cdi	TF binding site BDTNP1_TFBS_twi
3R	14885695	3R_14885695_SNP [dm3] 3R_19059973_SNP [dm6]	A	G	3.362e^-5	0.69	INTRON cdi	TF binding site BDTNP1_TFBS_dl
2R	16584145	2R_16584145_SNP [dm3] 2R_20696640_SNP [dm6]	A	T	3.432e^-5	0.69	INTERGENIC
3R	1999217	3R_1999217_SNP [dm3] 3R_6173495_SNP [dm6]	G	T	3.487e^-5	0.69	UPSTREAM Osi1 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	44465	3L_44465_SNP [dm3] 3L_44465_SNP [dm6]	A	G	3.494e^-5	0.69	INTERGENIC
2R	16689706	2R_16689706_SNP [dm3] 2R_20802201_SNP [dm6]	A	G	3.518e^-5	0.69	INTERGENIC
2L	795002	2L_795002_SNP [dm3] 2L_795002_SNP [dm6]	C	T	3.549e^-5	0.69	INTERGENIC
2R	15465823	2R_15465823_DEL [dm3] 2R_19578318_DEL [dm6]	AG	T	3.582e^-5	0.69	INTRON sm
X	15667705	X_15667705_SNP [dm3] X_15773672_SNP [dm6]	G	A	3.668e^-5	0.69	NON_SYNONYMOUS_CODING CG43672 DOWNSTREAM CG33172	TF binding site mE1_TFBS_sens
2L	14696906	2L_14696906_SNP [dm3] 2L_14696906_SNP [dm6]	G	A	3.670e^-5	0.69	INTERGENIC
2R	18137564	2R_18137564_SNP [dm3] 2R_22250059_SNP [dm6]	A	T	3.693e^-5	0.69	INTRON dve	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	9886102	2L_9886102_SNP [dm3] 2L_9886102_SNP [dm6]	C	T	3.750e^-5	0.69	UTR_5_PRIME nAChRalpha6 UPSTREAM CR44701
X	3860303	X_3860303_SNP [dm3] X_3966270_SNP [dm6]	T	C	3.760e^-5	0.69	SYNONYMOUS_CODING CG6428 UPSTREAM lva	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	19284340	X_19284340_DEL [dm3] X_19390307_DEL [dm6]	AA	A	3.772e^-5	0.69	INTRON kek5
3R	26579105	3R_26579105_SNP [dm3] 3R_30753383_SNP [dm6]	T	C	3.782e^-5	0.69	INTERGENIC
3R	25210425	3R_25210425_SNP [dm3] 3R_29384703_SNP [dm6]	C	T	3.799e^-5	0.69	INTRON Ptp99A
3R	25210430	3R_25210430_SNP [dm3] 3R_29384708_SNP [dm6]	T	A	3.799e^-5	0.69	INTRON Ptp99A
3R	14882977	3R_14882977_SNP [dm3] 3R_19057255_SNP [dm6]	A	C	3.860e^-5	0.69	INTRON cdi
3L	1414692	3L_1414692_DEL [dm3] 3L_1414692_DEL [dm6]	AA	G	3.915e^-5	0.69	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	25284553	3R_25284553_SNP [dm3] 3R_29458831_SNP [dm6]	C	G	3.955e^-5	0.69	INTRON Ptp99A EXON CR44022	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	9669394	2L_9669394_SNP [dm3] 2L_9669394_SNP [dm6]	C	T	4.026e^-5	0.69	DOWNSTREAM CR44150 INTERGENIC
2L	4685093	2L_4685093_SNP [dm3] 2L_4685093_SNP [dm6]	C	T	4.035e^-5	0.69	NON_SYNONYMOUS_CODING CG11929 UPSTREAM Bsg25A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16584085	2R_16584085_SNP [dm3] 2R_20696580_SNP [dm6]	T	A	4.035e^-5	0.69	INTERGENIC
3R	26582891	3R_26582891_SNP [dm3] 3R_30757169_SNP [dm6]	G	A	4.082e^-5	0.69	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	12697582	2R_12697582_DEL [dm3] 2R_16810077_DEL [dm6]	TT	T	4.094e^-5	0.69	UPSTREAM CR44465 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7363058	2R_7363058_SNP [dm3] 2R_11475553_SNP [dm6]	C	A	4.108e^-5	0.69	UTR_5_PRIME inv UPSTREAM inv	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26579109	3R_26579109_SNP [dm3] 3R_30753387_SNP [dm6]	G	T	4.134e^-5	0.69	INTERGENIC
3R	22398717	3R_22398717_SNP [dm3] 3R_26572995_SNP [dm6]	G	A	4.199e^-5	0.69	INTRON scrib
2L	10021506	2L_10021506_SNP [dm3] 2L_10021506_SNP [dm6]	C	T	4.294e^-5	0.69	INTERGENIC
3L	16950863	3L_16950863_SNP [dm3] 3L_16957763_SNP [dm6]	G	T	4.304e^-5	0.69	INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl
3R	16412572	3R_16412572_SNP [dm3] 3R_20586850_SNP [dm6]	G	A	4.333e^-5	0.69	SYNONYMOUS_CODING Sep2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19697073	2L_19697073_DEL [dm3] 2L_19697073_DEL [dm6]	TT	T	4.383e^-5	0.69	INTRON Lar	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	16246153	3L_16246153_INS [dm3] 3L_16253053_INS [dm6]	A	AGGT	4.433e^-5	0.69	UPSTREAM CG13055 INTERGENIC
3L	5256485	3L_5256485_SNP [dm3] 3L_5263385_SNP [dm6]	A	C	4.480e^-5	0.69	INTRON shep
3L	7373521	3L_7373521_SNP [dm3] 3L_7380421_SNP [dm6]	A	C	4.494e^-5	0.69	INTRON SMSr
3R	22397335	3R_22397335_SNP [dm3] 3R_26571613_SNP [dm6]	G	C	4.514e^-5	0.69	INTRON scrib
3L	16158308	3L_16158308_SNP [dm3] 3L_16165208_SNP [dm6]	G	A	4.571e^-5	0.69	UPSTREAM CG5151 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25287926	3R_25287926_SNP [dm3] 3R_29462204_SNP [dm6]	C	T	4.572e^-5	0.69	NON_SYNONYMOUS_CODING Ptp99A INTRON Ptp99A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	14405349	3R_14405349_DEL [dm3] 3R_18579627_DEL [dm6]	AATATATCTTTCATGGGATT...	A	4.600e^-5	0.69	INTRON fray & 1 other
3R	24431602	3R_24431602_SNP [dm3] 3R_28605880_SNP [dm6]	A	T	4.615e^-5	0.69	UPSTREAM CG9986 DOWNSTREAM Hrb98DE INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	19819534	3R_19819534_SNP [dm3] 3R_23993812_SNP [dm6]	C	A	4.626e^-5	0.69	UTR_5_PRIME Rab7 UPSTREAM CG13604 INTRON Rab7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	6249035	3R_6249035_INS [dm3] 3R_10423313_INS [dm6]	T	TT	4.681e^-5	0.69	INTERGENIC
X	2765384	X_2765384_SNP [dm3] X_2871351_SNP [dm6]	T	C	4.731e^-5	0.69	DOWNSTREAM CG14416 INTRON kirre
2L	14003592	2L_14003592_SNP [dm3] 2L_14003592_SNP [dm6]	C	A	4.788e^-5	0.69	INTERGENIC
3L	15759134	3L_15759134_SNP [dm3] 3L_15766034_SNP [dm6]	T	A	4.871e^-5	0.69	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18265536	2R_18265536_SNP [dm3] 2R_22378031_SNP [dm6]	T	A	4.890e^-5	0.69	UTR_3_PRIME Rtf1 DOWNSTREAM CR45327 & 1 other
3R	14405498	3R_14405498_SNP [dm3] 3R_18579776_SNP [dm6]	T	A	5.019e^-5	0.69	INTRON fray & 1 other
3R	14880277	3R_14880277_SNP [dm3] 3R_19054555_SNP [dm6]	G	A	5.062e^-5	0.69	INTRON cdi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	3860327	X_3860327_SNP [dm3] X_3966294_SNP [dm6]	T	C	5.136e^-5	0.69	SYNONYMOUS_CODING CG6428 UPSTREAM lva	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	5388785	X_5388785_SNP [dm3] X_5494752_SNP [dm6]	C	T	5.247e^-5	0.69	SYNONYMOUS_CODING frma DOWNSTREAM SPR
3R	25210389	3R_25210389_SNP [dm3] 3R_29384667_SNP [dm6]	A	G	5.275e^-5	0.69	INTRON Ptp99A
3R	22602407	3R_22602407_SNP [dm3] 3R_26776685_SNP [dm6]	C	A	5.280e^-5	0.69	INTERGENIC
2R	10679229	2R_10679229_SNP [dm3] 2R_14791724_SNP [dm6]	A	G	5.326e^-5	0.69	INTRON kn	TF binding site BDTNP1_TFBS_dl
3L	44380	3L_44380_DEL [dm3] 3L_44380_DEL [dm6]	GGAGG	G	5.329e^-5	0.69	INTERGENIC
3L	7370439	3L_7370439_SNP [dm3] 3L_7377339_SNP [dm6]	A	T	5.392e^-5	0.69	INTRON SMSr
3R	11855016	3R_11855016_SNP [dm3] 3R_16029294_SNP [dm6]	T	G	5.411e^-5	0.69	INTRON pnr	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	26581010	3R_26581010_SNP [dm3] 3R_30755288_SNP [dm6]	G	A	5.460e^-5	0.69	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13137231	2R_13137231_SNP [dm3] 2R_17249726_SNP [dm6]	T	C	5.473e^-5	0.69	INTRON mbl
2L	14003597	2L_14003597_SNP [dm3] 2L_14003597_SNP [dm6]	G	C	5.480e^-5	0.69	INTERGENIC
3L	41250	3L_41250_SNP [dm3] 3L_41250_SNP [dm6]	C	T	5.495e^-5	0.69	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12970897	2L_12970897_SNP [dm3] 2L_12970897_SNP [dm6]	T	A	5.501e^-5	0.69	INTERGENIC
3L	15270605	3L_15270605_SNP [dm3] 3L_15277505_SNP [dm6]	C	G	5.585e^-5	0.69	INTERGENIC
3R	14405456	3R_14405456_SNP [dm3] 3R_18579734_SNP [dm6]	G	A	5.636e^-5	0.69	INTRON fray & 1 other
3R	14877777	3R_14877777_SNP [dm3] 3R_19052055_SNP [dm6]	G	A	5.658e^-5	0.69	INTRON cdi
3R	4350226	3R_4350226_SNP [dm3] 3R_8524504_SNP [dm6]	C	T	5.824e^-5	0.69	SYNONYMOUS_CODING CG31259 DOWNSTREAM CG31454
2R	16659053	2R_16659053_SNP [dm3] 2R_20771548_SNP [dm6]	A	C	5.851e^-5	0.69	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	1979175	3R_1979175_SNP [dm3] 3R_6153453_SNP [dm6]	A	T	5.884e^-5	0.69	INTRON CG31559
2R	18323766	2R_18323766_INS [dm3] 2R_22436261_INS [dm6]	C	CG	5.891e^-5	0.69	INTERGENIC
2R	16449617	2R_16449617_SNP [dm3] 2R_20562112_SNP [dm6]	T	A	5.900e^-5	0.69	START_GAINED Mgat1 UTR_5_PRIME Mgat1 UPSTREAM CR44653 DOWNSTREAM CG43308 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	7609114	3L_7609114_SNP [dm3] 3L_7616014_SNP [dm6]	C	T	6.005e^-5	0.69	INTRON CG33275
X	19256757	X_19256757_SNP [dm3] X_19362724_SNP [dm6]	T	C	6.050e^-5	0.69	INTRON kek5	TF binding site BDTNP1_TFBS_dl
2R	19022076	2R_19022076_SNP [dm3] 2R_23134553_SNP [dm6]	A	C	6.067e^-5	0.69	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	11035003	3L_11035003_SNP [dm3] 3L_11041903_SNP [dm6]	T	C	6.212e^-5	0.69	INTRON CG43693	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	7408088	3R_7408088_SNP [dm3] 3R_11582366_SNP [dm6]	C	T	6.236e^-5	0.69	UPSTREAM wkd DOWNSTREAM CG5342 INTRON wkd	TF binding site BDTNP1_TFBS_dl
3L	44427	3L_44427_SNP [dm3] 3L_44427_SNP [dm6]	A	T	6.238e^-5	0.69	INTERGENIC
3L	4557892	3L_4557892_SNP [dm3] 3L_4557892_SNP [dm6]	G	C	6.248e^-5	0.69	UTR_5_PRIME CG42540 INTRON CG42540
3L	5489845	3L_5489845_SNP [dm3] 3L_5496745_SNP [dm6]	G	T	6.249e^-5	0.69	DOWNSTREAM blanks INTERGENIC
3L	15802234	3L_15802234_SNP [dm3] 3L_15809134_SNP [dm6]	G	T	6.275e^-5	0.69	UPSTREAM CG13445 DOWNSTREAM CG6244 & 1 other INTERGENIC
2R	3668205	2R_3668205_SNP [dm3] 2R_7780700_SNP [dm6]	G	C	6.285e^-5	0.69	INTRON CG30497 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	14405266	3R_14405266_DEL [dm3] 3R_18579544_DEL [dm6]	TT	T	6.365e^-5	0.69	INTRON fray & 1 other
2R	16584150	2R_16584150_DEL [dm3] 2R_20696645_DEL [dm6]	AA	T	6.371e^-5	0.69	INTERGENIC
2L	12979079	2L_12979079_SNP [dm3] 2L_12979079_SNP [dm6]	C	T	6.379e^-5	0.69	SYNONYMOUS_CODING Vha68-3 DOWNSTREAM Vha68-2
2L	13359478	2L_13359478_SNP [dm3] 2L_13359478_SNP [dm6]	C	T	6.445e^-5	0.69	DOWNSTREAM CG9377 INTERGENIC
2L	15284760	2L_15284760_SNP [dm3] 2L_15284760_SNP [dm6]	T	C	6.510e^-5	0.69	UPSTREAM CG15263 INTERGENIC
2L	17948829	2L_17948829_SNP [dm3] 2L_17948829_SNP [dm6]	A	T	6.632e^-5	0.69	EXON CR44398
3R	4201224	3R_4201224_SNP [dm3] 3R_8375502_SNP [dm6]	A	G	6.680e^-5	0.69	INTRON CG45263
2L	10475297	2L_10475297_SNP [dm3] 2L_10475297_SNP [dm6]	A	T	6.706e^-5	0.69	UPSTREAM RluA-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15465988	2R_15465988_SNP [dm3] 2R_19578483_SNP [dm6]	C	T	6.735e^-5	0.69	INTRON sm
2R	20747649	2R_20747649_SNP [dm3] 2R_24860126_SNP [dm6]	T	C	6.742e^-5	0.69	EXON CR44829
2L	13734311	2L_13734311_SNP [dm3] 2L_13734311_SNP [dm6]	C	T	6.825e^-5	0.69	INTERGENIC
3L	2659473	3L_2659473_SNP [dm3] 3L_2659473_SNP [dm6]	A	G	6.963e^-5	0.69	UPSTREAM CG33233 INTRON Fife
3L	43891	3L_43891_SNP [dm3] 3L_43891_SNP [dm6]	T	A	6.980e^-5	0.69	INTERGENIC
X	7881106	X_7881106_SNP [dm3] X_7987073_SNP [dm6]	T	C	7.022e^-5	0.69	DOWNSTREAM sn INTERGENIC	TF binding site mE1_TFBS_chinmo
X	12050700	X_12050700_SNP [dm3] X_12156667_SNP [dm6]	A	G	7.044e^-5	0.69	INTRON Ten-a
3R	25781057	3R_25781057_SNP [dm3] 3R_29955335_SNP [dm6]	A	G	7.154e^-5	0.69	INTRON TkR99D
3R	21194922	3R_21194922_DEL [dm3] 3R_25369200_DEL [dm6]	ATGGTA	A	7.164e^-5	0.69	INTRON Fur1
3L	43096	3L_43096_SNP [dm3] 3L_43096_SNP [dm6]	G	A	7.175e^-5	0.69	INTERGENIC
3R	24700922	3R_24700922_SNP [dm3] 3R_28875200_SNP [dm6]	G	A	7.252e^-5	0.69	SYNONYMOUS_CODING CG33203 UPSTREAM CG14528 DOWNSTREAM CG14529	TF binding site mE1_TFBS_cad
2L	14212652	2L_14212652_SNP [dm3] 2L_14212652_SNP [dm6]	T	A	7.264e^-5	0.69	INTRON Dyrk2
3L	45261	3L_45261_SNP [dm3] 3L_45261_SNP [dm6]	C	A	7.267e^-5	0.69	INTERGENIC
3L	895798	3L_895798_SNP [dm3] 3L_895798_SNP [dm6]	C	G	7.333e^-5	0.69	UPSTREAM CG34056 DOWNSTREAM CG32479 INTERGENIC
3R	7405442	3R_7405442_SNP [dm3] 3R_11579720_SNP [dm6]	A	C	7.368e^-5	0.69	SYNONYMOUS_CODING CG5342 UPSTREAM CG6790
3L	14104009	3L_14104009_SNP [dm3] 3L_14110909_SNP [dm6]	A	G	7.369e^-5	0.69	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_zfh1
3R	21012990	3R_21012990_SNP [dm3] 3R_25187268_SNP [dm6]	A	G	7.426e^-5	0.69	INTRON lobo & 1 other	TF binding site BDTNP1_TFBS_dl
3L	43289	3L_43289_SNP [dm3] 3L_43289_SNP [dm6]	T	G	7.478e^-5	0.69	INTERGENIC
3L	3772016	3L_3772016_SNP [dm3] 3L_3772016_SNP [dm6]	G	T	7.504e^-5	0.69	INTRON CG32264
3L	43410	3L_43410_SNP [dm3] 3L_43410_SNP [dm6]	C	T	7.540e^-5	0.69	INTERGENIC
2L	2701514	2L_2701514_SNP [dm3] 2L_2701514_SNP [dm6]	C	T	7.613e^-5	0.69	INTRON CG31690
X	7550745	X_7550745_SNP [dm3] X_7656712_SNP [dm6]	A	T	7.634e^-5	0.69	INTRON ct
2L	5447873	2L_5447873_SNP [dm3] 2L_5447873_SNP [dm6]	G	A	7.649e^-5	0.69	INTERGENIC
3L	3370316	3L_3370316_SNP [dm3] 3L_3370316_SNP [dm6]	A	T	7.674e^-5	0.69	DOWNSTREAM YT521-B & 1 other INTERGENIC
3L	3370317	3L_3370317_SNP [dm3] 3L_3370317_SNP [dm6]	T	A	7.674e^-5	0.69	DOWNSTREAM YT521-B & 1 other INTERGENIC
3R	23952941	3R_23952941_SNP [dm3] 3R_28127219_SNP [dm6]	A	T	7.724e^-5	0.69	INTERGENIC	TF binding site mE1_TFBS_inv
3R	19819580	3R_19819580_SNP [dm3] 3R_23993858_SNP [dm6]	C	A	7.732e^-5	0.69	UPSTREAM CG13604 INTRON Rab7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	12970923	2L_12970923_SNP [dm3] 2L_12970923_SNP [dm6]	G	A	7.770e^-5	0.69	INTERGENIC
3R	25286670	3R_25286670_SNP [dm3] 3R_29460948_SNP [dm6]	C	G	7.802e^-5	0.69	UPSTREAM Ptp99A INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	19780004	X_19780004_SNP [dm3] X_19885971_SNP [dm6]	A	T	7.819e^-5	0.69	DOWNSTREAM amn INTRON Hers	TF binding site BDTNP1_TFBS_dl
X	3422428	X_3422428_INS [dm3] X_3528395_INS [dm6]	T	TCA	7.847e^-5	0.69	INTRON CG32791
3R	22397659	3R_22397659_SNP [dm3] 3R_26571937_SNP [dm6]	G	A	7.865e^-5	0.69	INTRON scrib
2L	7999036	2L_7999036_SNP [dm3] 2L_7999036_SNP [dm6]	C	T	7.939e^-5	0.69	UTR_5_PRIME Sirup UPSTREAM CG7227 DOWNSTREAM Wwox	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	1888108	2L_1888108_SNP [dm3] 2L_1888108_SNP [dm6]	A	G	8.109e^-5	0.69	INTRON CG7337	TF binding site BDTNP1_TFBS_da
2R	6711196	2R_6711196_SNP [dm3] 2R_10823691_SNP [dm6]	C	A	8.193e^-5	0.69	UTR_5_PRIME CG12325 UPSTREAM CG12343	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3R	24431612	3R_24431612_SNP [dm3] 3R_28605890_SNP [dm6]	C	T	8.200e^-5	0.69	UPSTREAM CG9986 DOWNSTREAM Hrb98DE INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14879963	3R_14879963_SNP [dm3] 3R_19054241_SNP [dm6]	G	T	8.234e^-5	0.69	INTRON cdi	TF binding site BDTNP1_TFBS_twi
3R	24458605	3R_24458605_SNP [dm3] 3R_28632883_SNP [dm6]	C	T	8.274e^-5	0.69	INTRON CG10011	TF binding site BDTNP1_TFBS_prd mE1_TFBS_sens
X	4554250	X_4554250_SNP [dm3] X_4660217_SNP [dm6]	G	T	8.286e^-5	0.69	INTRON CG3009	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	1994637	3R_1994637_SNP [dm3] 3R_6168915_SNP [dm6]	A	G	8.298e^-5	0.69	INTRON CG1077
3L	13318196	3L_13318196_SNP [dm3] 3L_13325096_SNP [dm6]	A	C	8.327e^-5	0.69	UPSTREAM CR44558 INTERGENIC
2R	15696839	2R_15696839_SNP [dm3] 2R_19809334_SNP [dm6]	G	T	8.374e^-5	0.69	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
X	3169331	X_3169331_SNP [dm3] X_3275298_SNP [dm6]	C	T	8.385e^-5	0.69	INTRON dnc
3L	41504	3L_41504_SNP [dm3] 3L_41504_SNP [dm6]	A	G	8.413e^-5	0.69	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5286596	3L_5286596_SNP [dm3] 3L_5293496_SNP [dm6]	T	G	8.459e^-5	0.69	INTERGENIC
3L	7363110	3L_7363110_DEL [dm3] 3L_7370010_DEL [dm6]	TT	T	8.483e^-5	0.69	UTR_5_PRIME akirin UPSTREAM Sh3beta & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	7362986	2R_7362986_SNP [dm3] 2R_11475481_SNP [dm6]	T	G	8.557e^-5	0.69	START_GAINED inv UTR_5_PRIME inv UPSTREAM inv	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6678099	X_6678099_SNP [dm3] X_6784066_SNP [dm6]	A	G	8.653e^-5	0.69	NON_SYNONYMOUS_CODING C3G	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23728543	3R_23728543_SNP [dm3] 3R_27902821_SNP [dm6]	T	G	8.661e^-5	0.69	INTRON CG34353
3R	19819600	3R_19819600_SNP [dm3] 3R_23993878_SNP [dm6]	C	T	8.675e^-5	0.69	UPSTREAM CG13604 INTRON Rab7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	19069659	3R_19069659_SNP [dm3] 3R_23243937_SNP [dm6]	A	C	8.687e^-5	0.69	INTRON CG4467
3R	25287954	3R_25287954_SNP [dm3] 3R_29462232_SNP [dm6]	G	A	8.713e^-5	0.69	SYNONYMOUS_CODING Ptp99A INTRON Ptp99A	TF binding site mE1_TFBS_chinmo
2L	18884274	2L_18884274_SNP [dm3] 2L_18884274_SNP [dm6]	A	G	8.715e^-5	0.69	INTERGENIC
2R	13368510	2R_13368510_SNP [dm3] 2R_17481005_SNP [dm6]	A	G	8.755e^-5	0.69	UTR_3_PRIME CG43110 DOWNSTREAM CG43110 INTRON veil	TF binding site mE1_TFBS_cad
2R	2426666	2R_2426666_SNP [dm3] 2R_6539161_SNP [dm6]	C	A	8.783e^-5	0.69	INTRON jing
2L	2764239	2L_2764239_SNP [dm3] 2L_2764239_SNP [dm6]	G	A	8.829e^-5	0.69	UTR_3_PRIME CG3077 DOWNSTREAM Trn-SR
X	3129120	X_3129120_SNP [dm3] X_3235087_SNP [dm6]	T	A	8.884e^-5	0.69	INTRON dnc
3L	6372232	3L_6372232_SNP [dm3] 3L_6379132_SNP [dm6]	A	T	8.895e^-5	0.69	INTERGENIC
3L	53117	3L_53117_SNP [dm3] 3L_53117_SNP [dm6]	C	T	8.965e^-5	0.69	DOWNSTREAM CG43149 INTERGENIC
3L	18156640	3L_18156640_SNP [dm3] 3L_18163540_SNP [dm6]	G	A	8.988e^-5	0.69	INTERGENIC
3R	14405332	3R_14405332_SNP [dm3] 3R_18579610_SNP [dm6]	T	C	9.015e^-5	0.69	INTRON fray & 1 other
2L	6163119	2L_6163119_SNP [dm3] 2L_6163119_SNP [dm6]	T	A	9.023e^-5	0.69	INTERGENIC
2R	16679709	2R_16679709_SNP [dm3] 2R_20792204_SNP [dm6]	G	C	9.060e^-5	0.69	UPSTREAM CG15225 & 1 other INTERGENIC
2L	2766296	2L_2766296_SNP [dm3] 2L_2766296_SNP [dm6]	G	C	9.074e^-5	0.69	UTR_5_PRIME aph-1 UPSTREAM CG3077 DOWNSTREAM Taf10b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8574267	2R_8574267_SNP [dm3] 2R_12686762_SNP [dm6]	A	T	9.129e^-5	0.69	UTR_5_PRIME CG13148 UPSTREAM CG13148 & 1 other INTRON CG13148	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	44935	3L_44935_SNP [dm3] 3L_44935_SNP [dm6]	A	G	9.146e^-5	0.69	INTERGENIC
2L	2765447	2L_2765447_SNP [dm3] 2L_2765447_SNP [dm6]	G	C	9.149e^-5	0.69	UPSTREAM aph-1 INTRON CG3077	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	15652132	3L_15652132_SNP [dm3] 3L_15659032_SNP [dm6]	G	A	9.191e^-5	0.69	UTR_3_PRIME Eig71Eh UPSTREAM Eig71Ei DOWNSTREAM Eig71Eg
3R	19819526	3R_19819526_INS [dm3] 3R_23993804_INS [dm6]	A	ACACATAGATAATCCATGAA...	9.227e^-5	0.69	UTR_5_PRIME Rab7 UPSTREAM CG13604 INTRON Rab7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	12972871	2L_12972871_SNP [dm3] 2L_12972871_SNP [dm6]	C	T	9.242e^-5	0.69	INTERGENIC
3L	56877	3L_56877_DEL [dm3] 3L_56877_DEL [dm6]	CTTTATTCTACCTGTTTCTT...	GCA	9.256e^-5	0.69	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
3R	14879983	3R_14879983_SNP [dm3] 3R_19054261_SNP [dm6]	T	C	9.263e^-5	0.69	INTRON cdi	TF binding site BDTNP1_TFBS_twi
3R	11112433	3R_11112433_SNP [dm3] 3R_15286711_SNP [dm6]	T	C	9.347e^-5	0.69	INTRON Tm1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	14530374	3L_14530374_SNP [dm3] 3L_14537274_SNP [dm6]	A	G	9.349e^-5	0.69	UPSTREAM bbg & 1 other DOWNSTREAM CG43246 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	16097986	2R_16097986_SNP [dm3] 2R_20210481_SNP [dm6]	A	T	9.351e^-5	0.69	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	20222913	3L_20222913_SNP [dm3] 3L_20229813_SNP [dm6]	A	G	9.352e^-5	0.69	UTR_3_PRIME Su_var_3-3	TF binding site mE1_TFBS_cad
2R	1321883	2R_1321883_SNP [dm3] 2R_5434378_SNP [dm6]	T	C	9.367e^-5	0.69	INTRON laccase2
3L	13863540	3L_13863540_SNP [dm3] 3L_13870440_SNP [dm6]	G	C	9.401e^-5	0.69	UTR_3_PRIME dysc
X	3129110	X_3129110_SNP [dm3] X_3235077_SNP [dm6]	T	C	9.406e^-5	0.69	INTRON dnc
3L	15802242	3L_15802242_SNP [dm3] 3L_15809142_SNP [dm6]	G	T	9.471e^-5	0.69	UPSTREAM CG13445 DOWNSTREAM CG6244 & 1 other INTERGENIC
X	9181733	X_9181733_SNP [dm3] X_9287700_SNP [dm6]	A	T	9.525e^-5	0.69	INTRON lz
3R	10906276	3R_10906276_SNP [dm3] 3R_15080554_SNP [dm6]	T	G	9.538e^-5	0.69	UTR_3_PRIME CG6966
2L	14376129	2L_14376129_MNP [dm3] 2L_14376129_MNP [dm6]	AAA	TTG	9.593e^-5	0.69	INTERGENIC	TF binding site mE1_TFBS_zfh1
3L	15802171	3L_15802171_SNP [dm3] 3L_15809071_SNP [dm6]	T	C	9.620e^-5	0.69	UPSTREAM CG13445 DOWNSTREAM CG6244 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	4557877	3L_4557877_SNP [dm3] 3L_4557877_SNP [dm6]	C	T	9.637e^-5	0.69	START_GAINED CG42540 UTR_5_PRIME CG42540 INTRON CG42540
3L	16965189	3L_16965189_SNP [dm3] 3L_16972089_SNP [dm6]	G	A	9.639e^-5	0.69	INTRON Exn
3L	18151698	3L_18151698_SNP [dm3] 3L_18158598_SNP [dm6]	G	A	9.811e^-5	0.69	INTRON CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18153071	3L_18153071_SNP [dm3] 3L_18159971_SNP [dm6]	C	T	9.879e^-5	0.69	UTR_5_PRIME CG13699
3R	22398432	3R_22398432_SNP [dm3] 3R_26572710_SNP [dm6]	C	T	9.921e^-5	0.69	INTRON scrib
2L	10024083	2L_10024083_SNP [dm3] 2L_10024083_SNP [dm6]	T	C	9.945e^-5	0.69	INTERGENIC
3L	2092193	3L_2092193_SNP [dm3] 3L_2092193_SNP [dm6]	T	C	9.969e^-5	0.69	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12383987	2R_12383987_DEL [dm3] 2R_16496482_DEL [dm6]	TT	T	9.986e^-5	0.69	DOWNSTREAM CG7813 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16584166	2R_16584166_SNP [dm3] 2R_20696661_SNP [dm6]	T	A	9.989e^-5	0.69	INTERGENIC
3R	20459042	3R_20459042_SNP [dm3] 3R_24633320_SNP [dm6]	C	T	1.002e^-4	0.69	SYNONYMOUS_CODING atl	TF binding site mE1_TFBS_chinmo
2L	9529938	2L_9529938_SNP [dm3] 2L_9529938_SNP [dm6]	G	C	1.004e^-4	0.69	DOWNSTREAM CG31883 INTRON Oatp30B
3L	22493289	3L_22493289_SNP [dm3] 3L_22500189_SNP [dm6]	G	A	1.005e^-4	0.69	INTERGENIC
2R	15465987	2R_15465987_SNP [dm3] 2R_19578482_SNP [dm6]	G	A	1.007e^-4	0.69	INTRON sm
2L	13359774	2L_13359774_SNP [dm3] 2L_13359774_SNP [dm6]	G	A	1.010e^-4	0.69	DOWNSTREAM CG9377 INTERGENIC	TF binding site mE1_TFBS_cad
2L	22674094	2L_22674094_SNP [dm3] 2L_22781362_SNP [dm6]	A	G	1.016e^-4	0.69	INTERGENIC
2L	1484925	2L_1484925_SNP [dm3] 2L_1484925_SNP [dm6]	C	T	1.017e^-4	0.69	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	1997163	3L_1997163_SNP [dm3] 3L_1997163_SNP [dm6]	G	T	1.022e^-4	0.69	INTERGENIC
3R	26584452	3R_26584452_SNP [dm3] 3R_30758730_SNP [dm6]	G	A	1.027e^-4	0.69	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13996169	2R_13996169_SNP [dm3] 2R_18108664_SNP [dm6]	A	T	1.035e^-4	0.69	UPSTREAM CG5756 INTERGENIC
2R	15218545	2R_15218545_SNP [dm3] 2R_19331040_SNP [dm6]	G	T	1.042e^-4	0.69	NON_SYNONYMOUS_CODING CG34045 INTRON Rgk1
3L	2311747	3L_2311747_SNP [dm3] 3L_2311747_SNP [dm6]	G	A	1.042e^-4	0.69	INTERGENIC
3R	14902405	3R_14902405_SNP [dm3] 3R_19076683_SNP [dm6]	A	G	1.045e^-4	0.69	INTRON cdi
3L	11478697	3L_11478697_SNP [dm3] 3L_11485597_SNP [dm6]	T	C	1.049e^-4	0.69	INTERGENIC
2R	16106893	2R_16106893_SNP [dm3] 2R_20219388_SNP [dm6]	G	T	1.052e^-4	0.69	INTERGENIC
3R	24716211	3R_24716211_SNP [dm3] 3R_28890489_SNP [dm6]	T	G	1.055e^-4	0.69	INTRON Doa
3L	4983514	3L_4983514_SNP [dm3] 3L_4983514_SNP [dm6]	G	C	1.058e^-4	0.69	INTRON Con
X	2346959	X_2346959_DEL [dm3] X_2452926_DEL [dm6]	TGGTGGTA	T	1.061e^-4	0.69	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4682940	2L_4682940_SNP [dm3] 2L_4682940_SNP [dm6]	C	T	1.064e^-4	0.69	DOWNSTREAM Bsg25A INTRON CG11929	TF binding site BDTNP1_TFBS_dl
3L	15646063	3L_15646063_SNP [dm3] 3L_15652963_SNP [dm6]	C	T	1.066e^-4	0.69	UPSTREAM Eig71Ec INTRON Eig71Ed
3R	1979651	3R_1979651_SNP [dm3] 3R_6153929_SNP [dm6]	C	T	1.069e^-4	0.69	INTRON CG31559
2R	10969567	2R_10969567_SNP [dm3] 2R_15082062_SNP [dm6]	C	T	1.070e^-4	0.69	INTERGENIC
3R	1983531	3R_1983531_SNP [dm3] 3R_6157809_SNP [dm6]	T	A	1.076e^-4	0.69	UPSTREAM CG31559 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	19022172	2R_19022172_SNP [dm3] 2R_23134649_SNP [dm6]	C	T	1.078e^-4	0.69	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	2203450	3L_2203450_SNP [dm3] 3L_2203450_SNP [dm6]	T	G	1.078e^-4	0.69	INTERGENIC
2R	6833476	2R_6833476_SNP [dm3] 2R_10945971_SNP [dm6]	C	T	1.079e^-4	0.69	UPSTREAM CR45228 INTERGENIC
2L	13112978	2L_13112978_SNP [dm3] 2L_13112978_SNP [dm6]	A	T	1.085e^-4	0.69	INTERGENIC
3L	8579045	3L_8579045_SNP [dm3] 3L_8585945_SNP [dm6]	T	C	1.091e^-4	0.69	INTRON CG43078	TF binding site mE1_TFBS_chinmo
X	3789383	X_3789383_DEL [dm3] X_3895350_DEL [dm6]	GTCCG	G	1.093e^-4	0.69	UTR_3_PRIME CG42541
2L	13469024	2L_13469024_SNP [dm3] 2L_13469024_SNP [dm6]	G	C	1.095e^-4	0.69	INTRON CG42784
3L	22493312	3L_22493312_DEL [dm3] 3L_22500212_DEL [dm6]	AA	A	1.100e^-4	0.69	INTERGENIC
2R	16584131	2R_16584131_SNP [dm3] 2R_20696626_SNP [dm6]	T	A	1.108e^-4	0.69	INTERGENIC
2R	16584135	2R_16584135_INS [dm3] 2R_20696630_INS [dm6]	T	TACTTAGCTGAACT...	1.108e^-4	0.69	INTERGENIC
2R	16584125	2R_16584125_SNP [dm3] 2R_20696620_SNP [dm6]	G	A	1.109e^-4	0.69	INTERGENIC
2L	1057479	2L_1057479_SNP [dm3] 2L_1057479_SNP [dm6]	T	A	1.111e^-4	0.69	INTRON S	TF binding site mE1_TFBS_sens
2L	7999047	2L_7999047_SNP [dm3] 2L_7999047_SNP [dm6]	A	G	1.111e^-4	0.69	UTR_5_PRIME Sirup UPSTREAM CG7227 DOWNSTREAM Wwox	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	18358627	2R_18358627_SNP [dm3] 2R_22471122_SNP [dm6]	C	T	1.115e^-4	0.69	SYNONYMOUS_CODING CG10384	TF binding site mE1_TFBS_chinmo
X	5521614	X_5521614_INS [dm3] X_5627581_INS [dm6]	T	TT	1.117e^-4	0.69	UTR_3_PRIME CG42492 DOWNSTREAM CG42492
3R	27077786	3R_27077786_SNP [dm3] 3R_31252064_SNP [dm6]	T	A	1.119e^-4	0.69	UTR_5_PRIME qless UPSTREAM mRpL32	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	10134442	2L_10134442_SNP [dm3] 2L_10134442_SNP [dm6]	G	A	1.129e^-4	0.69	INTRON CG44153
2L	1057497	2L_1057497_DEL [dm3] 2L_1057497_DEL [dm6]	TACCCAATTCACAATTT...	T	1.129e^-4	0.69	INTRON S	TF binding site mE1_TFBS_sens
2L	6892769	2L_6892769_SNP [dm3] 2L_6892769_SNP [dm6]	G	A	1.133e^-4	0.69	INTRON Nlg2
2L	18884312	2L_18884312_SNP [dm3] 2L_18884312_SNP [dm6]	A	C	1.134e^-4	0.69	INTERGENIC
X	7885209	X_7885209_SNP [dm3] X_7991176_SNP [dm6]	G	C	1.135e^-4	0.69	INTERGENIC
3L	10748751	3L_10748751_SNP [dm3] 3L_10755651_SNP [dm6]	C	T	1.142e^-4	0.69	INTERGENIC
3R	11112409	3R_11112409_SNP [dm3] 3R_15286687_SNP [dm6]	T	A	1.145e^-4	0.69	INTRON Tm1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	26053708	3R_26053708_SNP [dm3] 3R_30227986_SNP [dm6]	T	C	1.149e^-4	0.69	INTERGENIC
3R	19819524	3R_19819524_SNP [dm3] 3R_23993802_SNP [dm6]	G	T	1.150e^-4	0.69	UTR_5_PRIME Rab7 UPSTREAM CG13604 INTRON Rab7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	25982751	3R_25982751_SNP [dm3] 3R_30157029_SNP [dm6]	G	A	1.151e^-4	0.69	INTRON CG11498	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14881039	3R_14881039_DEL [dm3] 3R_19055317_DEL [dm6]	TCGTGTTT	T	1.153e^-4	0.69	INTRON cdi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	14881168	3R_14881168_SNP [dm3] 3R_19055446_SNP [dm6]	C	T	1.153e^-4	0.69	INTRON cdi	TF binding site BDTNP1_TFBS_twi
2L	2698884	2L_2698884_SNP [dm3] 2L_2698884_SNP [dm6]	A	G	1.159e^-4	0.69	INTRON CG31690
3R	17319338	3R_17319338_SNP [dm3] 3R_21493616_SNP [dm6]	G	C	1.159e^-4	0.69	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10680602	2R_10680602_SNP [dm3] 2R_14793097_SNP [dm6]	A	G	1.168e^-4	0.693	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	153696	3L_153696_SNP [dm3] 3L_153696_SNP [dm6]	A	T	1.175e^-4	0.695	INTRON p130CAS	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15097193	3L_15097193_SNP [dm3] 3L_15104093_SNP [dm6]	C	A	1.180e^-4	0.696	INTRON CTPsyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	15537737	2R_15537737_SNP [dm3] 2R_19650232_SNP [dm6]	C	T	1.187e^-4	0.697	INTERGENIC
2L	13326271	2L_13326271_SNP [dm3] 2L_13326271_SNP [dm6]	G	C	1.192e^-4	0.697	INTRON CG43778
3R	22397818	3R_22397818_SNP [dm3] 3R_26572096_SNP [dm6]	C	T	1.196e^-4	0.697	INTRON scrib
3L	44333	3L_44333_SNP [dm3] 3L_44333_SNP [dm6]	C	G	1.197e^-4	0.697	INTERGENIC
X	14138953	X_14138953_SNP [dm3] X_14244920_SNP [dm6]	G	C	1.211e^-4	0.701	INTRON CG32599
3L	15652127	3L_15652127_SNP [dm3] 3L_15659027_SNP [dm6]	C	T	1.212e^-4	0.701	UTR_3_PRIME Eig71Eh UPSTREAM Eig71Ei DOWNSTREAM Eig71Eg
3R	14193401	3R_14193401_SNP [dm3] 3R_18367679_SNP [dm6]	T	G	1.221e^-4	0.704	NON_SYNONYMOUS_CODING Nup43 DOWNSTREAM gl
3L	18167011	3L_18167011_SNP [dm3] 3L_18173911_SNP [dm6]	A	G	1.240e^-4	0.709	INTRON W	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10824717	2L_10824717_DEL [dm3] 2L_10824717_DEL [dm6]	TT	T	1.240e^-4	0.709	INTRON Nos
2R	6833299	2R_6833299_DEL [dm3] 2R_10945794_DEL [dm6]	AA	A	1.242e^-4	0.709	UPSTREAM CR45228 INTERGENIC
3L	17381404	3L_17381404_SNP [dm3] 3L_17388304_SNP [dm6]	T	C	1.245e^-4	0.709	INTRON CG13731
2L	12582945	2L_12582945_SNP [dm3] 2L_12582945_SNP [dm6]	C	T	1.247e^-4	0.709	DOWNSTREAM CR44596 EXON CR44595
3L	12630201	3L_12630201_SNP [dm3] 3L_12637101_SNP [dm6]	G	A	1.252e^-4	0.709	INTRON CR32111
3R	26899952	3R_26899952_SNP [dm3] 3R_31074230_SNP [dm6]	G	A	1.254e^-4	0.709	INTRON Sox100B
2L	7649729	2L_7649729_SNP [dm3] 2L_7649729_SNP [dm6]	T	C	1.260e^-4	0.709	INTRON Slob
3L	3653359	3L_3653359_SNP [dm3] 3L_3653359_SNP [dm6]	T	C	1.263e^-4	0.709	UTR_3_PRIME dar1 DOWNSTREAM CG10862
2R	16584054	2R_16584054_SNP [dm3] 2R_20696549_SNP [dm6]	A	G	1.275e^-4	0.713	INTERGENIC
2L	1062828	2L_1062828_SNP [dm3] 2L_1062828_SNP [dm6]	G	T	1.284e^-4	0.713	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6711216	2R_6711216_SNP [dm3] 2R_10823711_SNP [dm6]	C	T	1.288e^-4	0.713	SYNONYMOUS_CODING CG12325 UPSTREAM CG12343	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2L	13489723	2L_13489723_INS [dm3] 2L_13489723_INS [dm6]	T	TCT	1.290e^-4	0.713	INTRON CG42784	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12970783	2L_12970783_SNP [dm3] 2L_12970783_SNP [dm6]	A	G	1.291e^-4	0.713	INTERGENIC
2R	6711123	2R_6711123_SNP [dm3] 2R_10823618_SNP [dm6]	C	T	1.296e^-4	0.713	UTR_5_PRIME CG12325 UPSTREAM CG12343	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12955537	2L_12955537_SNP [dm3] 2L_12955537_SNP [dm6]	C	T	1.299e^-4	0.713	INTERGENIC
2R	16036051	2R_16036051_INS [dm3] 2R_20148546_INS [dm6]	C	CC	1.301e^-4	0.713	INTERGENIC
3R	24431679	3R_24431679_SNP [dm3] 3R_28605957_SNP [dm6]	G	C	1.312e^-4	0.717	UPSTREAM CG9986 DOWNSTREAM Hrb98DE INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14661371	3L_14661371_SNP [dm3] 3L_14668271_SNP [dm6]	T	A	1.317e^-4	0.718	INTRON dlp
2L	1485310	2L_1485310_SNP [dm3] 2L_1485310_SNP [dm6]	A	G	1.331e^-4	0.723	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10017480	2L_10017480_SNP [dm3] 2L_10017480_SNP [dm6]	T	A	1.337e^-4	0.725	UPSTREAM CG13131 INTERGENIC
3L	12721425	3L_12721425_SNP [dm3] 3L_12728325_SNP [dm6]	G	A	1.344e^-4	0.725	INTERGENIC
3L	2001397	3L_2001397_DEL [dm3] 3L_2001397_DEL [dm6]	AA	A	1.345e^-4	0.725	INTERGENIC
2R	16686438	2R_16686438_SNP [dm3] 2R_20798933_SNP [dm6]	C	T	1.361e^-4	0.731	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	18878191	2L_18878191_DEL [dm3] 2L_18878191_DEL [dm6]	AA	A	1.370e^-4	0.733	INTRON tup	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
X	7886449	X_7886449_SNP [dm3] X_7992416_SNP [dm6]	G	A	1.380e^-4	0.733	INTERGENIC
3R	6137438	3R_6137438_SNP [dm3] 3R_10311716_SNP [dm6]	C	A	1.383e^-4	0.733	UPSTREAM CG6293 DOWNSTREAM Bruce INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	1802823	3R_1802823_SNP [dm3] 3R_5977101_SNP [dm6]	A	C	1.385e^-4	0.733	UPSTREAM Obp83b INTERGENIC
3R	19819529	3R_19819529_SNP [dm3] 3R_23993807_SNP [dm6]	T	G	1.388e^-4	0.733	UTR_5_PRIME Rab7 UPSTREAM CG13604 INTRON Rab7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	13065565	X_13065565_SNP [dm3] X_13171532_SNP [dm6]	C	T	1.389e^-4	0.733	INTRON CG34411
3L	18155583	3L_18155583_SNP [dm3] 3L_18162483_SNP [dm6]	T	A	1.394e^-4	0.733	UTR_5_PRIME CG13699
3L	22376338	3L_22376338_SNP [dm3] 3L_22383238_SNP [dm6]	C	T	1.400e^-4	0.733	INTRON Ten-m	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	56683	3L_56683_SNP [dm3] 3L_56683_SNP [dm6]	A	G	1.404e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_cad
2R	13651165	2R_13651165_SNP [dm3] 2R_17763660_SNP [dm6]	G	T	1.406e^-4	0.733	NON_SYNONYMOUS_CODING CG5009 DOWNSTREAM OstDelta
2L	13472107	2L_13472107_SNP [dm3] 2L_13472107_SNP [dm6]	T	C	1.411e^-4	0.733	INTRON CG42784
3R	26053704	3R_26053704_SNP [dm3] 3R_30227982_SNP [dm6]	C	G	1.416e^-4	0.733	INTERGENIC
X	7146711	X_7146711_SNP [dm3] X_7252678_SNP [dm6]	A	G	1.439e^-4	0.733	INTRON CR44357	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
X	1192425	X_1192425_SNP [dm3] X_1298392_SNP [dm6]	T	A	1.442e^-4	0.733	UPSTREAM CG32811 INTRON DAAM
2L	10199359	2L_10199359_SNP [dm3] 2L_10199359_SNP [dm6]	A	C	1.443e^-4	0.733	UPSTREAM Sur DOWNSTREAM Ripalpha INTERGENIC
X	3412679	X_3412679_INS [dm3] X_3518646_INS [dm6]	C	CG	1.445e^-4	0.733	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	15508581	3L_15508581_SNP [dm3] 3L_15515481_SNP [dm6]	G	T	1.448e^-4	0.733	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	596753	3L_596753_SNP [dm3] 3L_596753_SNP [dm6]	A	T	1.457e^-4	0.733	SYNONYMOUS_CODING MED14	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24688990	3R_24688990_SNP [dm3] 3R_28863268_SNP [dm6]	A	C	1.459e^-4	0.733	SYNONYMOUS_CODING spg	TF binding site mE1_TFBS_sens
3R	22893948	3R_22893948_SNP [dm3] 3R_27068226_SNP [dm6]	C	T	1.462e^-4	0.733	INTRON spz	TF binding site mE1_TFBS_HSA
2R	15439610	2R_15439610_SNP [dm3] 2R_19552105_SNP [dm6]	C	T	1.473e^-4	0.733	UTR_5_PRIME CG43111 INTRON sm
3L	4557813	3L_4557813_SNP [dm3] 3L_4557813_SNP [dm6]	T	C	1.477e^-4	0.733	UTR_5_PRIME CG42540 INTRON CG42540
3R	7407303	3R_7407303_SNP [dm3] 3R_11581581_SNP [dm6]	A	T	1.479e^-4	0.733	UTR_5_PRIME wkd DOWNSTREAM CG5342	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	13302230	3L_13302230_SNP [dm3] 3L_13309130_SNP [dm6]	A	G	1.482e^-4	0.733	INTERGENIC
3L	20642792	3L_20642792_SNP [dm3] 3L_20649692_SNP [dm6]	G	A	1.486e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1211034	2L_1211034_SNP [dm3] 2L_1211034_SNP [dm6]	A	T	1.486e^-4	0.733	INTERGENIC
2L	1486522	2L_1486522_DEL [dm3] 2L_1486522_DEL [dm6]	AAA	A	1.494e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21186380	3R_21186380_SNP [dm3] 3R_25360658_SNP [dm6]	A	T	1.499e^-4	0.733	DOWNSTREAM CG11913 INTRON Fur1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23732629	3R_23732629_SNP [dm3] 3R_27906907_SNP [dm6]	C	T	1.499e^-4	0.733	INTERGENIC
2L	4782981	2L_4782981_SNP [dm3] 2L_4782981_SNP [dm6]	A	C	1.502e^-4	0.733	INTRON CG15630
3L	15652877	3L_15652877_SNP [dm3] 3L_15659777_SNP [dm6]	T	C	1.506e^-4	0.733	UPSTREAM Eig71Eh DOWNSTREAM Eig71Ej INTRON Eig71Ei
3L	15652860	3L_15652860_SNP [dm3] 3L_15659760_SNP [dm6]	C	T	1.507e^-4	0.733	NON_SYNONYMOUS_CODING Eig71Ei UPSTREAM Eig71Eh DOWNSTREAM Eig71Ej
2L	8295857	2L_8295857_SNP [dm3] 2L_8295857_SNP [dm6]	A	G	1.509e^-4	0.733	DOWNSTREAM CR43752 INTRON Btk29A	TF binding site BDTNP1_TFBS_dl
3R	12775880	3R_12775880_SNP [dm3] 3R_16950158_SNP [dm6]	G	A	1.512e^-4	0.733	INTRON Abd-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	20339855	3R_20339855_SNP [dm3] 3R_24514133_SNP [dm6]	A	G	1.519e^-4	0.733	SYNONYMOUS_CODING nAChRbeta2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
2L	12970895	2L_12970895_SNP [dm3] 2L_12970895_SNP [dm6]	T	A	1.523e^-4	0.733	INTERGENIC
3R	25286581	3R_25286581_SNP [dm3] 3R_29460859_SNP [dm6]	T	A	1.525e^-4	0.733	INTRON Ptp99A	TF binding site BDTNP1_TFBS_twi
2L	18982430	2L_18982430_SNP [dm3] 2L_18982430_SNP [dm6]	A	C	1.528e^-4	0.733	INTRON Swip-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13739135	3L_13739135_SNP [dm3] 3L_13746035_SNP [dm6]	A	G	1.530e^-4	0.733	INTRON bru-3
2L	2844034	2L_2844034_SNP [dm3] 2L_2844034_SNP [dm6]	C	T	1.532e^-4	0.733	SYNONYMOUS_CODING CG18558 DOWNSTREAM CG18557	TF binding site mE1_TFBS_cad
3L	7609199	3L_7609199_SNP [dm3] 3L_7616099_SNP [dm6]	T	C	1.534e^-4	0.733	INTRON CG33275
3L	16005534	3L_16005534_SNP [dm3] 3L_16012434_SNP [dm6]	A	T	1.535e^-4	0.733	UPSTREAM mib1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2346967	X_2346967_INS [dm3] X_2452934_INS [dm6]	T	TCTCTATTTTCTTT...	1.543e^-4	0.733	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	23731175	3R_23731175_SNP [dm3] 3R_27905453_SNP [dm6]	G	A	1.543e^-4	0.733	UTR_5_PRIME CG34353	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	23724449	3R_23724449_SNP [dm3] 3R_27898727_SNP [dm6]	C	G	1.549e^-4	0.733	INTRON CG34353
2L	7113467	2L_7113467_SNP [dm3] 2L_7113467_SNP [dm6]	G	A	1.552e^-4	0.733	INTRON Pvf3
3L	5286566	3L_5286566_SNP [dm3] 3L_5293466_SNP [dm6]	A	G	1.553e^-4	0.733	INTERGENIC
2L	2154567	2L_2154567_SNP [dm3] 2L_2154567_SNP [dm6]	C	T	1.582e^-4	0.733	SYNONYMOUS_CODING AIF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6738928	2L_6738928_SNP [dm3] 2L_6738928_SNP [dm6]	T	G	1.596e^-4	0.733	NON_SYNONYMOUS_CODING TTLL3A	TF binding site mE1_TFBS_cad
X	6114570	X_6114570_SNP [dm3] X_6220537_SNP [dm6]	C	A	1.609e^-4	0.733	UTR_5_PRIME Efr INTRON Efr	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	1728499	2R_1728499_SNP [dm3] 2R_5840994_SNP [dm6]	T	C	1.611e^-4	0.733	INTRON dpr12	TF binding site mE1_TFBS_sbb
2L	8208249	2L_8208249_SNP [dm3] 2L_8208249_SNP [dm6]	C	A	1.616e^-4	0.733	SYNONYMOUS_CODING CG8419	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	18153051	3L_18153051_SNP [dm3] 3L_18159951_SNP [dm6]	C	T	1.623e^-4	0.733	NON_SYNONYMOUS_CODING CG13699
2L	16981619	2L_16981619_SNP [dm3] 2L_16981619_SNP [dm6]	T	A	1.624e^-4	0.733	UPSTREAM CR44408 DOWNSTREAM CG44406 INTRON beat-IIIb
3R	25627692	3R_25627692_SNP [dm3] 3R_29801970_SNP [dm6]	T	C	1.627e^-4	0.733	SYNONYMOUS_CODING CG7834 DOWNSTREAM Ice	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8081813	2L_8081813_INS [dm3] 2L_8081813_INS [dm6]	A	ATGGA	1.627e^-4	0.733	INTRON Mcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	44806	3L_44806_SNP [dm3] 3L_44806_SNP [dm6]	T	A	1.631e^-4	0.733	INTERGENIC
2L	1257877	2L_1257877_SNP [dm3] 2L_1257877_SNP [dm6]	C	A	1.638e^-4	0.733	INTRON robo3
2R	16585980	2R_16585980_SNP [dm3] 2R_20698475_SNP [dm6]	T	A	1.651e^-4	0.733	UPSTREAM dpr INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	6372085	3L_6372085_SNP [dm3] 3L_6378985_SNP [dm6]	A	T	1.653e^-4	0.733	INTERGENIC
X	3412742	X_3412742_SNP [dm3] X_3518709_SNP [dm6]	T	G	1.658e^-4	0.733	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	11297340	3L_11297340_SNP [dm3] 3L_11304240_SNP [dm6]	G	T	1.668e^-4	0.733	INTERGENIC
3L	14010065	3L_14010065_SNP [dm3] 3L_14016965_SNP [dm6]	C	T	1.672e^-4	0.733	NON_SYNONYMOUS_CODING upSET	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3454324	2L_3454324_SNP [dm3] 2L_3454324_SNP [dm6]	T	G	1.674e^-4	0.733	DOWNSTREAM CG12795 INTRON Cog3
2L	8085646	2L_8085646_SNP [dm3] 2L_8085646_SNP [dm6]	G	A	1.675e^-4	0.733	INTRON Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	3555237	3L_3555237_SNP [dm3] 3L_3555237_SNP [dm6]	A	C	1.677e^-4	0.733	INTRON Eip63E
2L	14276685	2L_14276685_DEL [dm3] 2L_14276685_DEL [dm6]	TTAT	T	1.688e^-4	0.733	UPSTREAM CG32971 INTRON wb & 1 other
2L	2766808	2L_2766808_SNP [dm3] 2L_2766808_SNP [dm6]	A	G	1.689e^-4	0.733	SYNONYMOUS_CODING aph-1 DOWNSTREAM Taf10b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	17087226	2L_17087226_SNP [dm3] 2L_17087226_SNP [dm6]	T	A	1.698e^-4	0.733	UPSTREAM CG12620 DOWNSTREAM CR43819 INTERGENIC
2R	16584128	2R_16584128_SNP [dm3] 2R_20696623_SNP [dm6]	G	T	1.705e^-4	0.733	INTERGENIC
2L	9665903	2L_9665903_SNP [dm3] 2L_9665903_SNP [dm6]	T	A	1.706e^-4	0.733	INTERGENIC
2L	7646793	2L_7646793_SNP [dm3] 2L_7646793_SNP [dm6]	A	G	1.710e^-4	0.733	DOWNSTREAM Slob INTRON Slob
2L	15284751	2L_15284751_SNP [dm3] 2L_15284751_SNP [dm6]	C	T	1.714e^-4	0.733	UPSTREAM CG15263 INTERGENIC
2L	5508513	2L_5508513_SNP [dm3] 2L_5508513_SNP [dm6]	A	G	1.730e^-4	0.733	INTERGENIC
3R	26579188	3R_26579188_SNP [dm3] 3R_30753466_SNP [dm6]	G	A	1.730e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	14376122	2L_14376122_SNP [dm3] 2L_14376122_SNP [dm6]	A	T	1.733e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_zfh1
3R	26024576	3R_26024576_SNP [dm3] 3R_30198854_SNP [dm6]	T	G	1.737e^-4	0.733	NON_SYNONYMOUS_CODING CG9743	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	44628	3L_44628_SNP [dm3] 3L_44628_SNP [dm6]	C	T	1.739e^-4	0.733	INTERGENIC
2L	18544575	2L_18544575_SNP [dm3] 2L_18544575_SNP [dm6]	A	C	1.749e^-4	0.733	INTRON Pde11
2R	15506927	2R_15506927_SNP [dm3] 2R_19619422_SNP [dm6]	T	G	1.754e^-4	0.733	INTRON sm	TF binding site BDTNP1_TFBS_dl
2R	8855688	2R_8855688_SNP [dm3] 2R_12968183_SNP [dm6]	T	C	1.760e^-4	0.733	SYNONYMOUS_CODING Psc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	6343666	2L_6343666_SNP [dm3] 2L_6343666_SNP [dm6]	G	T	1.760e^-4	0.733	UPSTREAM Cpr INTRON Cpr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_HSA
3R	23731545	3R_23731545_SNP [dm3] 3R_27905823_SNP [dm6]	T	C	1.763e^-4	0.733	UTR_5_PRIME CG34353	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	12835387	3R_12835387_SNP [dm3] 3R_17009665_SNP [dm6]	G	A	1.766e^-4	0.733	SYNONYMOUS_CODING CG8907
3L	5844729	3L_5844729_DEL [dm3] 3L_5851629_DEL [dm6]	TGTACGT	T	1.766e^-4	0.733	INTERGENIC
2R	17140306	2R_17140306_SNP [dm3] 2R_21252801_SNP [dm6]	A	G	1.768e^-4	0.733	INTERGENIC
2L	9681121	2L_9681121_SNP [dm3] 2L_9681121_SNP [dm6]	C	G	1.770e^-4	0.733	INTERGENIC
2R	15439476	2R_15439476_SNP [dm3] 2R_19551971_SNP [dm6]	G	T	1.774e^-4	0.733	UPSTREAM CG43111 INTRON sm
3L	8874801	3L_8874801_SNP [dm3] 3L_8881701_SNP [dm6]	C	T	1.778e^-4	0.733	INTRON dally
3R	21156847	3R_21156847_SNP [dm3] 3R_25331125_SNP [dm6]	G	T	1.779e^-4	0.733	NON_SYNONYMOUS_CODING CHKov2 DOWNSTREAM CG10669
2R	15465716	2R_15465716_DEL [dm3] 2R_19578211_DEL [dm6]	TACAG	T	1.783e^-4	0.733	INTRON sm
3R	24776164	3R_24776164_SNP [dm3] 3R_28950442_SNP [dm6]	G	A	1.784e^-4	0.733	INTRON CG14521
2L	4690425	2L_4690425_SNP [dm3] 2L_4690425_SNP [dm6]	C	G	1.784e^-4	0.733	SYNONYMOUS_CODING CG3251
3L	45067	3L_45067_DEL [dm3] 3L_45067_DEL [dm6]	TTGAATCTTT	T	1.787e^-4	0.733	INTERGENIC
3R	19676555	3R_19676555_SNP [dm3] 3R_23850833_SNP [dm6]	T	C	1.792e^-4	0.733	UTR_3_PRIME CG34355
3L	17983865	3L_17983865_SNP [dm3] 3L_17990765_SNP [dm6]	G	C	1.801e^-4	0.733	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	9665892	2L_9665892_SNP [dm3] 2L_9665892_SNP [dm6]	A	C	1.811e^-4	0.733	INTERGENIC
3L	887413	3L_887413_SNP [dm3] 3L_887413_SNP [dm6]	T	C	1.811e^-4	0.733	UPSTREAM CG32479 INTRON CG32479
3L	15508571	3L_15508571_SNP [dm3] 3L_15515471_SNP [dm6]	G	A	1.814e^-4	0.733	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	14376393	2L_14376393_SNP [dm3] 2L_14376393_SNP [dm6]	T	A	1.818e^-4	0.733	INTERGENIC
2R	19022177	2R_19022177_SNP [dm3] 2R_23134654_SNP [dm6]	T	A	1.829e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	9862304	2L_9862304_INS [dm3] 2L_9862304_INS [dm6]	A	AGCAATTAA	1.834e^-4	0.733	INTRON nAChRalpha6
3L	8326588	3L_8326588_SNP [dm3] 3L_8333488_SNP [dm6]	A	C	1.837e^-4	0.733	INTERGENIC
2L	13884903	2L_13884903_SNP [dm3] 2L_13884903_SNP [dm6]	A	T	1.840e^-4	0.733	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13885433	2L_13885433_SNP [dm3] 2L_13885433_SNP [dm6]	C	A	1.840e^-4	0.733	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10147899	2L_10147899_SNP [dm3] 2L_10147899_SNP [dm6]	G	C	1.842e^-4	0.733	INTRON CG44153 & 1 other
2R	10605861	2R_10605861_SNP [dm3] 2R_14718356_SNP [dm6]	A	C	1.843e^-4	0.733	INTERGENIC
2L	7648291	2L_7648291_SNP [dm3] 2L_7648291_SNP [dm6]	G	A	1.851e^-4	0.733	INTRON Slob
2R	16584123	2R_16584123_SNP [dm3] 2R_20696618_SNP [dm6]	G	C	1.852e^-4	0.733	INTERGENIC
2L	8082429	2L_8082429_SNP [dm3] 2L_8082429_SNP [dm6]	A	C	1.856e^-4	0.733	UPSTREAM CR45257 & 1 other INTRON Mcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	15465707	2R_15465707_DEL [dm3] 2R_19578202_DEL [dm6]	TAACAACA	T	1.858e^-4	0.733	INTRON sm
3R	23731004	3R_23731004_SNP [dm3] 3R_27905282_SNP [dm6]	G	T	1.859e^-4	0.733	UTR_5_PRIME CG34353	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	14405694	3R_14405694_DEL [dm3] 3R_18579972_DEL [dm6]	CTAC	AGT	1.859e^-4	0.733	INTRON fray & 1 other
2L	1059600	2L_1059600_SNP [dm3] 2L_1059600_SNP [dm6]	A	G	1.860e^-4	0.733	INTRON S
3L	21911329	3L_21911329_SNP [dm3] 3L_21918229_SNP [dm6]	G	T	1.864e^-4	0.733	INTRON mub
2L	8209025	2L_8209025_SNP [dm3] 2L_8209025_SNP [dm6]	C	A	1.865e^-4	0.733	SYNONYMOUS_CODING CG8419 DOWNSTREAM Su_var_205	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens
3R	14884277	3R_14884277_SNP [dm3] 3R_19058555_SNP [dm6]	G	A	1.865e^-4	0.733	INTRON cdi	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5810554	X_5810554_SNP [dm3] X_5916521_SNP [dm6]	C	T	1.868e^-4	0.733	UPSTREAM CG3726 & 1 other INTRON CG3011	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	7548337	X_7548337_SNP [dm3] X_7654304_SNP [dm6]	A	G	1.872e^-4	0.733	INTRON ct
3R	14879984	3R_14879984_SNP [dm3] 3R_19054262_SNP [dm6]	G	T	1.881e^-4	0.733	INTRON cdi	TF binding site BDTNP1_TFBS_twi
2R	12044766	2R_12044766_SNP [dm3] 2R_16157261_SNP [dm6]	C	T	1.895e^-4	0.733	DOWNSTREAM CG10734 INTRON lbk
2L	18875194	2L_18875194_DEL [dm3] 2L_18875194_DEL [dm6]	AGCCGCAAGCCCGGGT...	C	1.896e^-4	0.733	INTRON tup	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19022086	2R_19022086_DEL [dm3] 2R_23134563_DEL [dm6]	AT	A	1.899e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	17188002	3L_17188002_SNP [dm3] 3L_17194902_SNP [dm6]	A	G	1.900e^-4	0.733	INTRON Rbp6
2L	15258424	2L_15258424_SNP [dm3] 2L_15258424_SNP [dm6]	C	T	1.901e^-4	0.733	SYNONYMOUS_CODING yuri DOWNSTREAM l_2_35Cc
3L	1327878	3L_1327878_SNP [dm3] 3L_1327878_SNP [dm6]	C	T	1.906e^-4	0.733	SYNONYMOUS_CODING Myo61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14398417	3R_14398417_DEL [dm3] 3R_18572695_DEL [dm6]	AC	T	1.923e^-4	0.733	UPSTREAM CG7694 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	14843519	3R_14843519_SNP [dm3] 3R_19017797_SNP [dm6]	C	T	1.923e^-4	0.733	NON_SYNONYMOUS_CODING gukh INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16659109	2R_16659109_DEL [dm3] 2R_20771604_DEL [dm6]	TA	T	1.925e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6823074	2R_6823074_SNP [dm3] 2R_10935569_SNP [dm6]	G	A	1.928e^-4	0.733	INTERGENIC
X	13380076	X_13380076_SNP [dm3] X_13486043_SNP [dm6]	T	A	1.932e^-4	0.733	INTRON Neto
3L	3328672	3L_3328672_SNP [dm3] 3L_3328672_SNP [dm6]	G	C	1.932e^-4	0.733	UPSTREAM CR45380 DOWNSTREAM PHGPx INTRON CG11526
3L	15508572	3L_15508572_SNP [dm3] 3L_15515472_SNP [dm6]	T	G	1.938e^-4	0.733	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	6711016	2R_6711016_SNP [dm3] 2R_10823511_SNP [dm6]	T	A	1.944e^-4	0.733	UTR_5_PRIME CG12325 UPSTREAM CG12325 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9665898	2L_9665898_SNP [dm3] 2L_9665898_SNP [dm6]	T	A	1.944e^-4	0.733	INTERGENIC
3L	4351276	3L_4351276_SNP [dm3] 3L_4351276_SNP [dm6]	T	C	1.950e^-4	0.733	INTRON Cip4
3L	18151697	3L_18151697_SNP [dm3] 3L_18158597_SNP [dm6]	T	A	1.953e^-4	0.733	INTRON CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3572110	2L_3572110_SNP [dm3] 2L_3572110_SNP [dm6]	T	C	1.956e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	14696948	2L_14696948_SNP [dm3] 2L_14696948_SNP [dm6]	T	A	1.958e^-4	0.733	INTERGENIC
2R	6710989	2R_6710989_SNP [dm3] 2R_10823484_SNP [dm6]	G	A	1.961e^-4	0.733	UTR_5_PRIME CG12325 UPSTREAM CG12325 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16412392	3R_16412392_SNP [dm3] 3R_20586670_SNP [dm6]	C	G	1.975e^-4	0.733	SYNONYMOUS_CODING Sep2 UPSTREAM CG16953	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10020732	2L_10020732_SNP [dm3] 2L_10020732_SNP [dm6]	A	G	1.985e^-4	0.733	INTERGENIC
3L	15646060	3L_15646060_SNP [dm3] 3L_15652960_SNP [dm6]	C	T	1.990e^-4	0.733	UPSTREAM Eig71Ec INTRON Eig71Ed
2R	14495222	2R_14495222_DEL [dm3] 2R_18607717_DEL [dm6]	TT	T	2.011e^-4	0.733	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	1327317	3L_1327317_SNP [dm3] 3L_1327317_SNP [dm6]	T	C	2.012e^-4	0.733	SYNONYMOUS_CODING Myo61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14001685	3R_14001685_SNP [dm3] 3R_18175963_SNP [dm6]	A	G	2.016e^-4	0.733	INTRON PP2A-B'
3L	2524130	3L_2524130_SNP [dm3] 3L_2524130_SNP [dm6]	G	A	2.021e^-4	0.733	INTRON Spn	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1888131	2L_1888131_SNP [dm3] 2L_1888131_SNP [dm6]	C	T	2.025e^-4	0.733	INTRON CG7337	TF binding site BDTNP1_TFBS_da
3R	14883002	3R_14883002_SNP [dm3] 3R_19057280_SNP [dm6]	G	A	2.027e^-4	0.733	INTRON cdi
3R	11984834	3R_11984834_SNP [dm3] 3R_16159112_SNP [dm6]	T	G	2.034e^-4	0.733	UTR_5_PRIME CG6006 INTRON CG6006
3R	12835342	3R_12835342_SNP [dm3] 3R_17009620_SNP [dm6]	C	T	2.034e^-4	0.733	SYNONYMOUS_CODING CG8907
3L	16239571	3L_16239571_SNP [dm3] 3L_16246471_SNP [dm6]	T	G	2.036e^-4	0.733	INTERGENIC
2L	4693061	2L_4693061_SNP [dm3] 2L_4693061_SNP [dm6]	G	A	2.041e^-4	0.733	INTERGENIC
X	10316863	X_10316863_SNP [dm3] X_10422830_SNP [dm6]	T	A	2.047e^-4	0.733	INTRON CG32683
3L	266487	3L_266487_DEL [dm3] 3L_266487_DEL [dm6]	ATGCAAATCACAAC...	A	2.048e^-4	0.733	UPSTREAM CG34263 & 1 other DOWNSTREAM mRpL17 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	43243	3L_43243_SNP [dm3] 3L_43243_SNP [dm6]	T	G	2.049e^-4	0.733	INTERGENIC
2L	9727651	2L_9727651_SNP [dm3] 2L_9727651_SNP [dm6]	A	C	2.052e^-4	0.733	INTRON Nckx30C
3R	9837299	3R_9837299_SNP [dm3] 3R_14011577_SNP [dm6]	T	C	2.053e^-4	0.733	INTRON rdx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
2L	10015685	2L_10015685_SNP [dm3] 2L_10015685_SNP [dm6]	T	C	2.053e^-4	0.733	SYNONYMOUS_CODING CG13131
3R	10807182	3R_10807182_INS [dm3] 3R_14981460_INS [dm6]	A	ATCGTATCCTAAGA...	2.053e^-4	0.733	INTERGENIC
X	8283677	X_8283677_INS [dm3] X_8389644_INS [dm6]	A	ATGTA	2.059e^-4	0.733	DOWNSTREAM CG1387 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11467135	2L_11467135_DEL [dm3] 2L_11467135_DEL [dm6]	CC	C	2.061e^-4	0.733	INTERGENIC
2R	16422069	2R_16422069_SNP [dm3] 2R_20534564_SNP [dm6]	G	A	2.061e^-4	0.733	SYNONYMOUS_CODING CG18067 DOWNSTREAM CG30154
3R	21384965	3R_21384965_SNP [dm3] 3R_25559243_SNP [dm6]	T	A	2.063e^-4	0.733	INTRON msi
3L	15508574	3L_15508574_SNP [dm3] 3L_15515474_SNP [dm6]	T	A	2.065e^-4	0.733	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	1998825	3R_1998825_SNP [dm3] 3R_6173103_SNP [dm6]	G	T	2.066e^-4	0.733	UPSTREAM Osi1 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12596994	2L_12596994_SNP [dm3] 2L_12596994_SNP [dm6]	C	T	2.067e^-4	0.733	INTRON nub
3L	44810	3L_44810_SNP [dm3] 3L_44810_SNP [dm6]	A	T	2.069e^-4	0.733	INTERGENIC
3R	27021865	3R_27021865_SNP [dm3] 3R_31196143_SNP [dm6]	G	A	2.069e^-4	0.733	UPSTREAM mesh & 1 other INTERGENIC
3L	9945643	3L_9945643_SNP [dm3] 3L_9952543_SNP [dm6]	T	A	2.071e^-4	0.733	INTRON CG34356
2R	8576040	2R_8576040_SNP [dm3] 2R_12688535_SNP [dm6]	G	A	2.072e^-4	0.733	SYNONYMOUS_CODING CG13148 DOWNSTREAM CG30053	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20211897	2R_20211897_SNP [dm3] 2R_24324374_SNP [dm6]	G	T	2.080e^-4	0.733	UPSTREAM CR44810 INTERGENIC
2R	6711003	2R_6711003_SNP [dm3] 2R_10823498_SNP [dm6]	A	G	2.083e^-4	0.733	START_GAINED CG12325 UTR_5_PRIME CG12325 UPSTREAM CG12325 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10600339	3R_10600339_SNP [dm3] 3R_14774617_SNP [dm6]	G	A	2.088e^-4	0.733	INTRON jvl
3R	19770588	3R_19770588_SNP [dm3] 3R_23944866_SNP [dm6]	G	A	2.088e^-4	0.733	INTRON CG12268	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23587997	3R_23587997_SNP [dm3] 3R_27762275_SNP [dm6]	A	C	2.094e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	17253689	2L_17253689_SNP [dm3] 2L_17253689_SNP [dm6]	A	T	2.109e^-4	0.733	INTRON beat-IIIc
2R	11352453	2R_11352453_INS [dm3] 2R_15464948_INS [dm6]	A	ACTA	2.109e^-4	0.733	INTRON CG43729
2L	1063533	2L_1063533_SNP [dm3] 2L_1063533_SNP [dm6]	C	T	2.111e^-4	0.733	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16998500	2L_16998500_SNP [dm3] 2L_16998500_SNP [dm6]	T	A	2.114e^-4	0.733	UPSTREAM CR45357 EXON CR45356
X	12493569	X_12493569_SNP [dm3] X_12599536_SNP [dm6]	G	T	2.115e^-4	0.733	SYNONYMOUS_CODING Sec16	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	18151364	3L_18151364_SNP [dm3] 3L_18158264_SNP [dm6]	G	A	2.119e^-4	0.733	NON_SYNONYMOUS_CODING CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14495269	2R_14495269_SNP [dm3] 2R_18607764_SNP [dm6]	G	C	2.130e^-4	0.733	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	13469020	2L_13469020_SNP [dm3] 2L_13469020_SNP [dm6]	G	C	2.134e^-4	0.733	INTRON CG42784
2L	1284385	2L_1284385_SNP [dm3] 2L_1284385_SNP [dm6]	G	A	2.137e^-4	0.733	INTRON robo3
3R	20388580	3R_20388580_SNP [dm3] 3R_24562858_SNP [dm6]	C	G	2.137e^-4	0.733	UTR_5_PRIME CG13624	TF binding site mE1_TFBS_cad
2L	9665876	2L_9665876_SNP [dm3] 2L_9665876_SNP [dm6]	A	T	2.141e^-4	0.733	INTERGENIC
2L	9665888	2L_9665888_SNP [dm3] 2L_9665888_SNP [dm6]	A	T	2.141e^-4	0.733	INTERGENIC
3L	15802235	3L_15802235_SNP [dm3] 3L_15809135_SNP [dm6]	T	C	2.147e^-4	0.733	UPSTREAM CG13445 DOWNSTREAM CG6244 & 1 other INTERGENIC
2L	13229670	2L_13229670_SNP [dm3] 2L_13229670_SNP [dm6]	T	C	2.147e^-4	0.733	UPSTREAM CG16815 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3L	17983868	3L_17983868_SNP [dm3] 3L_17990768_SNP [dm6]	A	T	2.153e^-4	0.733	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	25439010	3R_25439010_SNP [dm3] 3R_29613288_SNP [dm6]	A	G	2.156e^-4	0.733	INTRON alph
3R	6107668	3R_6107668_SNP [dm3] 3R_10281946_SNP [dm6]	C	T	2.165e^-4	0.733	INTRON CG43143
2L	8088971	2L_8088971_SNP [dm3] 2L_8088971_SNP [dm6]	A	T	2.166e^-4	0.733	UPSTREAM Bsg INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	21267286	3L_21267286_SNP [dm3] 3L_21274186_SNP [dm6]	C	G	2.166e^-4	0.733	INTRON AcCoAS
3R	6351868	3R_6351868_SNP [dm3] 3R_10526146_SNP [dm6]	G	A	2.167e^-4	0.733	INTRON hth
3R	21179829	3R_21179829_SNP [dm3] 3R_25354107_SNP [dm6]	C	A	2.169e^-4	0.733	INTRON Fur1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	23588533	3R_23588533_SNP [dm3] 3R_27762811_SNP [dm6]	C	T	2.172e^-4	0.733	INTERGENIC
2L	13248290	2L_13248290_SNP [dm3] 2L_13248290_SNP [dm6]	A	C	2.182e^-4	0.733	INTRON CG16820	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	6089217	X_6089217_SNP [dm3] X_6195184_SNP [dm6]	C	A	2.185e^-4	0.733	SYNONYMOUS_CODING CG32750
3R	15097023	3R_15097023_SNP [dm3] 3R_19271301_SNP [dm6]	A	C	2.188e^-4	0.733	INTERGENIC
3R	1972430	3R_1972430_SNP [dm3] 3R_6146708_SNP [dm6]	A	G	2.190e^-4	0.733	INTERGENIC
3R	16413437	3R_16413437_DEL [dm3] 3R_20587715_DEL [dm6]	CAC	C	2.194e^-4	0.733	UPSTREAM Srp72 INTRON Sep2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	11812880	2R_11812880_SNP [dm3] 2R_15925375_SNP [dm6]	C	T	2.198e^-4	0.733	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19074949	X_19074949_INS [dm3] X_19180916_INS [dm6]	T	TTAT	2.200e^-4	0.733		TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	24628616	3R_24628616_SNP [dm3] 3R_28802894_SNP [dm6]	C	T	2.201e^-4	0.733	INTERGENIC
2L	1057485	2L_1057485_SNP [dm3] 2L_1057485_SNP [dm6]	G	C	2.201e^-4	0.733	INTRON S	TF binding site mE1_TFBS_sens
3R	23731540	3R_23731540_SNP [dm3] 3R_27905818_SNP [dm6]	T	C	2.201e^-4	0.733	UTR_5_PRIME CG34353	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	16246135	3L_16246135_SNP [dm3] 3L_16253035_SNP [dm6]	T	C	2.208e^-4	0.733	UPSTREAM CG13055 INTERGENIC
X	1189931	X_1189931_SNP [dm3] X_1295898_SNP [dm6]	C	T	2.218e^-4	0.733	SYNONYMOUS_CODING DAAM UTR_5_PRIME DAAM	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16422443	3L_16422443_SNP [dm3] 3L_16429343_SNP [dm6]	G	A	2.221e^-4	0.733	INTRON CG33158 & 1 other
2L	1733505	2L_1733505_SNP [dm3] 2L_1733505_SNP [dm6]	G	A	2.225e^-4	0.733	INTRON CG17646
3L	846304	3L_846304_SNP [dm3] 3L_846304_SNP [dm6]	G	C	2.226e^-4	0.733	INTRON CG13889	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6306148	2L_6306148_SNP [dm3] 2L_6306148_SNP [dm6]	A	G	2.227e^-4	0.733	INTRON Ddr
3R	14398311	3R_14398311_SNP [dm3] 3R_18572589_SNP [dm6]	C	A	2.228e^-4	0.733	UPSTREAM CG7694 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	25604544	3R_25604544_SNP [dm3] 3R_29778822_SNP [dm6]	G	A	2.229e^-4	0.733	DOWNSTREAM fig INTRON kay	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	21179838	3R_21179838_SNP [dm3] 3R_25354116_SNP [dm6]	T	C	2.232e^-4	0.733	INTRON Fur1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	14521691	2L_14521691_SNP [dm3] 2L_14521691_SNP [dm6]	G	C	2.240e^-4	0.733	INTERGENIC
3R	23733390	3R_23733390_SNP [dm3] 3R_27907668_SNP [dm6]	G	A	2.241e^-4	0.733	INTERGENIC
2L	13745445	2L_13745445_DEL [dm3] 2L_13745445_DEL [dm6]	TTTAA	T	2.247e^-4	0.733	INTERGENIC
3R	25604498	3R_25604498_SNP [dm3] 3R_29778776_SNP [dm6]	G	A	2.250e^-4	0.733	DOWNSTREAM fig INTRON kay	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	18155052	3L_18155052_SNP [dm3] 3L_18161952_SNP [dm6]	A	T	2.253e^-4	0.733	INTRON CG13699
2R	16584110	2R_16584110_SNP [dm3] 2R_20696605_SNP [dm6]	G	C	2.256e^-4	0.733	INTERGENIC
3R	26039521	3R_26039521_SNP [dm3] 3R_30213799_SNP [dm6]	T	C	2.263e^-4	0.733	UPSTREAM CecB DOWNSTREAM Cec2 INTERGENIC
X	20309647	X_20309647_SNP [dm3] X_20438620_SNP [dm6]	T	C	2.265e^-4	0.733	INTRON CG1695
3L	43663	3L_43663_SNP [dm3] 3L_43663_SNP [dm6]	T	G	2.266e^-4	0.733	INTERGENIC
3R	16146655	3R_16146655_SNP [dm3] 3R_20320933_SNP [dm6]	A	T	2.269e^-4	0.733	UPSTREAM CG42668 INTRON CG42668
3R	2022598	3R_2022598_SNP [dm3] 3R_6196876_SNP [dm6]	A	T	2.277e^-4	0.733	INTERGENIC
2L	12970922	2L_12970922_SNP [dm3] 2L_12970922_SNP [dm6]	G	A	2.278e^-4	0.733	INTERGENIC
3L	5286580	3L_5286580_SNP [dm3] 3L_5293480_SNP [dm6]	G	A	2.284e^-4	0.733	INTERGENIC
3L	16725803	3L_16725803_SNP [dm3] 3L_16732703_SNP [dm6]	G	A	2.284e^-4	0.733	UPSTREAM CG9701 INTERGENIC
2L	12973633	2L_12973633_SNP [dm3] 2L_12973633_SNP [dm6]	G	C	2.288e^-4	0.733	UPSTREAM Vha68-2 INTERGENIC
3R	16488731	3R_16488731_SNP [dm3] 3R_20663009_SNP [dm6]	C	T	2.288e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12021628	3L_12021628_SNP [dm3] 3L_12028528_SNP [dm6]	A	G	2.300e^-4	0.733	DOWNSTREAM CR43994 INTRON rols
2L	9665891	2L_9665891_SNP [dm3] 2L_9665891_SNP [dm6]	A	G	2.313e^-4	0.733	INTERGENIC
X	7550422	X_7550422_SNP [dm3] X_7656389_SNP [dm6]	G	A	2.315e^-4	0.733	INTRON ct
3L	13237807	3L_13237807_SNP [dm3] 3L_13244707_SNP [dm6]	T	A	2.315e^-4	0.733	INTRON caps
2L	7055327	2L_7055327_SNP [dm3] 2L_7055327_SNP [dm6]	A	T	2.316e^-4	0.733	UTR_3_PRIME milt UPSTREAM Mnn1 DOWNSTREAM milt	TF binding site BDTNP1_TFBS_dl
2L	17126633	2L_17126633_SNP [dm3] 2L_17126633_SNP [dm6]	C	A	2.317e^-4	0.733	UPSTREAM CG31784 INTERGENIC
3L	2401956	3L_2401956_SNP [dm3] 3L_2401956_SNP [dm6]	C	T	2.322e^-4	0.733	INTRON CG45186
3R	25287418	3R_25287418_SNP [dm3] 3R_29461696_SNP [dm6]	T	C	2.329e^-4	0.733	UPSTREAM Ptp99A INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	16584443	2R_16584443_SNP [dm3] 2R_20696938_SNP [dm6]	G	A	2.331e^-4	0.733	INTERGENIC
2L	1949453	2L_1949453_SNP [dm3] 2L_1949453_SNP [dm6]	T	C	2.333e^-4	0.733	DOWNSTREAM erm INTERGENIC	regulatory region REDfly_CRMs
X	6097666	X_6097666_SNP [dm3] X_6203633_SNP [dm6]	C	G	2.333e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_inv
3L	4298058	3L_4298058_SNP [dm3] 3L_4298058_SNP [dm6]	A	T	2.335e^-4	0.733	INTRON dyl
3R	26582853	3R_26582853_SNP [dm3] 3R_30757131_SNP [dm6]	G	A	2.338e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	24819336	3R_24819336_SNP [dm3] 3R_28993614_SNP [dm6]	A	G	2.340e^-4	0.733	SYNONYMOUS_CODING wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1480370	2L_1480370_INS [dm3] 2L_1480370_INS [dm6]	T	TCCC	2.343e^-4	0.733	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	2832905	2L_2832905_SNP [dm3] 2L_2832905_SNP [dm6]	T	C	2.349e^-4	0.733	INTERGENIC
X	2774822	X_2774822_SNP [dm3] X_2880789_SNP [dm6]	G	A	2.356e^-4	0.733	INTRON kirre
3L	39998	3L_39998_SNP [dm3] 3L_39998_SNP [dm6]	G	T	2.359e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_inv mE1_TFBS_Trl
X	1191760	X_1191760_SNP [dm3] X_1297727_SNP [dm6]	T	A	2.371e^-4	0.733	DOWNSTREAM CG32811 INTRON DAAM	TF binding site mE1_TFBS_chinmo
2R	15506935	2R_15506935_INS [dm3] 2R_19619430_INS [dm6]	T	TGGTAAATAAT...	2.373e^-4	0.733	INTRON sm	TF binding site BDTNP1_TFBS_dl
2L	6606428	2L_6606428_SNP [dm3] 2L_6606428_SNP [dm6]	G	A	2.377e^-4	0.733	INTERGENIC
3R	10808657	3R_10808657_SNP [dm3] 3R_14982935_SNP [dm6]	A	G	2.380e^-4	0.733	INTERGENIC
2L	9831795	2L_9831795_SNP [dm3] 2L_9831795_SNP [dm6]	C	T	2.381e^-4	0.733	INTRON nAChRalpha6
3L	3316098	3L_3316098_SNP [dm3] 3L_3316098_SNP [dm6]	T	C	2.382e^-4	0.733	UPSTREAM Drsl5 DOWNSTREAM Drsl3 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3R	18618763	3R_18618763_INS [dm3] 3R_22793041_INS [dm6]	T	TT	2.387e^-4	0.733	UTR_3_PRIME CG7029
2L	1063531	2L_1063531_SNP [dm3] 2L_1063531_SNP [dm6]	A	G	2.390e^-4	0.733	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24380279	3R_24380279_SNP [dm3] 3R_28554557_SNP [dm6]	T	G	2.391e^-4	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5655561	2L_5655561_INS [dm3] 2L_5655561_INS [dm6]	T	TAT	2.392e^-4	0.733	INTRON CG31646	TF binding site mE1_TFBS_inv
3R	16412365	3R_16412365_SNP [dm3] 3R_20586643_SNP [dm6]	G	A	2.395e^-4	0.733	SYNONYMOUS_CODING Sep2 UPSTREAM CG16953	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14882114	3R_14882114_DEL [dm3] 3R_19056392_DEL [dm6]	AAA	T	2.399e^-4	0.733	INTRON cdi
3L	15802247	3L_15802247_SNP [dm3] 3L_15809147_SNP [dm6]	G	T	2.402e^-4	0.733	UPSTREAM CG13445 DOWNSTREAM CG6244 & 1 other INTERGENIC
2R	10679213	2R_10679213_SNP [dm3] 2R_14791708_SNP [dm6]	T	C	2.403e^-4	0.733	INTRON kn	TF binding site BDTNP1_TFBS_dl
3R	2884816	3R_2884816_DEL [dm3] 3R_7059094_DEL [dm6]	AAATAA	A	2.405e^-4	0.733	UPSTREAM dj DOWNSTREAM CG1979 INTERGENIC	regulatory region REDfly_CRMs
2R	11066675	2R_11066675_SNP [dm3] 2R_15179170_SNP [dm6]	T	C	2.409e^-4	0.733	INTRON igl
3L	17077948	3L_17077948_SNP [dm3] 3L_17084848_SNP [dm6]	G	C	2.421e^-4	0.733	INTRON Rbp6
2L	9665883	2L_9665883_SNP [dm3] 2L_9665883_SNP [dm6]	T	C	2.423e^-4	0.733	INTERGENIC
2L	8208026	2L_8208026_SNP [dm3] 2L_8208026_SNP [dm6]	T	C	2.427e^-4	0.733	SYNONYMOUS_CODING CG8419	TF binding site mE1_TFBS_sens
2L	8219449	2L_8219449_SNP [dm3] 2L_8219449_SNP [dm6]	C	T	2.432e^-4	0.733	SYNONYMOUS_CODING Snx6
2R	10969566	2R_10969566_SNP [dm3] 2R_15082061_SNP [dm6]	C	T	2.433e^-4	0.733	INTERGENIC
X	6114631	X_6114631_SNP [dm3] X_6220598_SNP [dm6]	T	C	2.433e^-4	0.733	INTRON Efr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
X	3789558	X_3789558_SNP [dm3] X_3895525_SNP [dm6]	C	T	2.442e^-4	0.733	UTR_3_PRIME CG42541
3L	9823660	3L_9823660_SNP [dm3] 3L_9830560_SNP [dm6]	G	T	2.450e^-4	0.733	INTRON CG43897	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16411933	3R_16411933_SNP [dm3] 3R_20586211_SNP [dm6]	G	T	2.451e^-4	0.733	UTR_3_PRIME Sep2 UPSTREAM CG16953
3R	16412317	3R_16412317_SNP [dm3] 3R_20586595_SNP [dm6]	C	T	2.454e^-4	0.733	SYNONYMOUS_CODING Sep2 UPSTREAM CG16953	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	18157355	3R_18157355_SNP [dm3] 3R_22331633_SNP [dm6]	A	C	2.455e^-4	0.733	UPSTREAM CG13862 INTRON CG33721	TF binding site mE1_TFBS_inv
3R	18357032	3R_18357032_SNP [dm3] 3R_22531310_SNP [dm6]	G	A	2.455e^-4	0.733	SYNONYMOUS_CODING CG33093 UPSTREAM CG33099 DOWNSTREAM CG5326	TF binding site mE1_TFBS_HSA
2L	10475190	2L_10475190_SNP [dm3] 2L_10475190_SNP [dm6]	A	G	2.458e^-4	0.733	UPSTREAM RluA-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2011362	2L_2011362_SNP [dm3] 2L_2011362_SNP [dm6]	T	A	2.470e^-4	0.734	UPSTREAM CG4238 & 2 others INTRON CG4238
3R	20351210	3R_20351210_SNP [dm3] 3R_24525488_SNP [dm6]	T	A	2.473e^-4	0.734	INTRON CG13618
2L	20413770	2L_20413770_SNP [dm3] 2L_20413770_SNP [dm6]	C	A	2.477e^-4	0.734	INTRON CG10947	transposable element FlyBase
3R	17886260	3R_17886260_SNP [dm3] 3R_22060538_SNP [dm6]	T	C	2.480e^-4	0.734	INTRON how
3L	5312635	3L_5312635_SNP [dm3] 3L_5319535_SNP [dm6]	T	G	2.480e^-4	0.734	INTERGENIC
3R	24699380	3R_24699380_SNP [dm3] 3R_28873658_SNP [dm6]	T	A	2.496e^-4	0.736	NON_SYNONYMOUS_CODING CG14529 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	20273104	3L_20273104_SNP [dm3] 3L_20280004_SNP [dm6]	C	G	2.497e^-4	0.736	UTR_5_PRIME gogo
X	14163494	X_14163494_SNP [dm3] X_14269461_SNP [dm6]	C	A	2.502e^-4	0.736	INTRON na
3L	2001508	3L_2001508_SNP [dm3] 3L_2001508_SNP [dm6]	T	C	2.506e^-4	0.736	INTERGENIC
3R	22610515	3R_22610515_INS [dm3] 3R_26784793_INS [dm6]	A	AGA	2.510e^-4	0.736	FRAME_SHIFT CG42790 UTR_3_PRIME CG42790 UPSTREAM CG42789
3R	5207224	3R_5207224_SNP [dm3] 3R_9381502_SNP [dm6]	T	C	2.516e^-4	0.736	INTRON FER
2L	14001806	2L_14001806_SNP [dm3] 2L_14001806_SNP [dm6]	T	A	2.531e^-4	0.736	UPSTREAM rk INTERGENIC
2L	2873038	2L_2873038_DEL [dm3] 2L_2873038_DEL [dm6]	ATGGTTATAT	A	2.531e^-4	0.736	INTRON CG31694	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	7000725	2L_7000725_SNP [dm3] 2L_7000725_SNP [dm6]	C	T	2.538e^-4	0.736	INTRON uif
2L	14276321	2L_14276321_SNP [dm3] 2L_14276321_SNP [dm6]	A	T	2.539e^-4	0.736	UPSTREAM CG32971 INTRON wb & 1 other
2L	8212773	2L_8212773_SNP [dm3] 2L_8212773_SNP [dm6]	C	T	2.555e^-4	0.736	UTR_5_PRIME CG8372 UPSTREAM CG8360 DOWNSTREAM Ssb-c31a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
X	6837432	X_6837432_SNP [dm3] X_6943399_SNP [dm6]	G	A	2.560e^-4	0.736	INTRON CG14431
X	10442558	X_10442558_SNP [dm3] X_10548525_SNP [dm6]	T	C	2.561e^-4	0.736	INTRON spri
2R	13789155	2R_13789155_SNP [dm3] 2R_17901650_SNP [dm6]	C	T	2.565e^-4	0.736	INTRON Elk
3R	20720642	3R_20720642_SNP [dm3] 3R_24894920_SNP [dm6]	A	T	2.567e^-4	0.736	UPSTREAM CG31121 INTRON CG11069	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	6089214	X_6089214_SNP [dm3] X_6195181_SNP [dm6]	C	T	2.568e^-4	0.736	SYNONYMOUS_CODING CG32750
X	21085475	X_21085475_INS [dm3] X_21214448_INS [dm6]	G	GAAC	2.570e^-4	0.736	INTRON CG32521
2L	12979898	2L_12979898_SNP [dm3] 2L_12979898_SNP [dm6]	A	G	2.572e^-4	0.736	SYNONYMOUS_CODING Vha68-3	TF binding site mE1_TFBS_chinmo
3R	9982951	3R_9982951_SNP [dm3] 3R_14157229_SNP [dm6]	T	C	2.572e^-4	0.736	SYNONYMOUS_CODING CG31533 DOWNSTREAM CG31327
2L	9665897	2L_9665897_SNP [dm3] 2L_9665897_SNP [dm6]	T	C	2.579e^-4	0.736	INTERGENIC
3L	7368959	3L_7368959_SNP [dm3] 3L_7375859_SNP [dm6]	C	A	2.580e^-4	0.736	SYNONYMOUS_CODING SMSr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	11300258	2R_11300258_SNP [dm3] 2R_15412753_SNP [dm6]	C	T	2.585e^-4	0.736	INTRON CG43729
2L	6155223	2L_6155223_SNP [dm3] 2L_6155223_SNP [dm6]	G	A	2.595e^-4	0.736	UPSTREAM CG31639 INTERGENIC
3L	5286766	3L_5286766_SNP [dm3] 3L_5293666_SNP [dm6]	C	T	2.611e^-4	0.736	INTERGENIC
3R	10985738	3R_10985738_SNP [dm3] 3R_15160016_SNP [dm6]	A	T	2.611e^-4	0.736	INTRON Gyc88E
2R	6808249	2R_6808249_SNP [dm3] 2R_10920744_SNP [dm6]	T	A	2.631e^-4	0.736	INTERGENIC	TF binding site mE1_TFBS_inv
3L	1457060	3L_1457060_DEL [dm3] 3L_1457060_DEL [dm6]	TACCGCCGAGTACATGCGGT...	T	2.632e^-4	0.736	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	1569090	2L_1569090_SNP [dm3] 2L_1569090_SNP [dm6]	C	G	2.638e^-4	0.736	INTRON haf	TF binding site mE1_TFBS_HSA
3R	24734016	3R_24734016_SNP [dm3] 3R_28908294_SNP [dm6]	G	A	2.641e^-4	0.736	SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25604198	3R_25604198_SNP [dm3] 3R_29778476_SNP [dm6]	C	T	2.642e^-4	0.736	DOWNSTREAM fig INTRON kay	TF binding site BDTNP1_TFBS_z
X	13016322	X_13016322_SNP [dm3] X_13122289_SNP [dm6]	A	G	2.642e^-4	0.736	SYNONYMOUS_CODING CG42237 DOWNSTREAM CG32638	TF binding site mE1_TFBS_cad
3R	14404583	3R_14404583_SNP [dm3] 3R_18578861_SNP [dm6]	C	T	2.649e^-4	0.736	INTRON fray & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18150381	3L_18150381_DEL [dm3] 3L_18157281_DEL [dm6]	GATG	G	2.652e^-4	0.736	INTRON CG13699
2L	1057480	2L_1057480_SNP [dm3] 2L_1057480_SNP [dm6]	A	T	2.655e^-4	0.736	INTRON S	TF binding site mE1_TFBS_sens
X	8820835	X_8820835_SNP [dm3] X_8926802_SNP [dm6]	T	C	2.657e^-4	0.736	INTRON rdgA
3L	44734	3L_44734_SNP [dm3] 3L_44734_SNP [dm6]	T	A	2.657e^-4	0.736	INTERGENIC
3R	6249047	3R_6249047_SNP [dm3] 3R_10423325_SNP [dm6]	G	A	2.661e^-4	0.736	INTERGENIC
3L	4041645	3L_4041645_SNP [dm3] 3L_4041645_SNP [dm6]	A	G	2.664e^-4	0.736	SYNONYMOUS_CODING Rcd5	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6711035	2R_6711035_SNP [dm3] 2R_10823530_SNP [dm6]	G	T	2.664e^-4	0.736	START_GAINED CG12325 UTR_5_PRIME CG12325 UPSTREAM CG12325 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3997687	3L_3997687_SNP [dm3] 3L_3997687_SNP [dm6]	A	G	2.669e^-4	0.736	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24734694	3R_24734694_SNP [dm3] 3R_28908972_SNP [dm6]	G	A	2.672e^-4	0.736	SYNONYMOUS_CODING Doa UPSTREAM Doa INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24702064	3R_24702064_SNP [dm3] 3R_28876342_SNP [dm6]	G	A	2.674e^-4	0.736	NON_SYNONYMOUS_CODING CG14528 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	20223014	3L_20223014_SNP [dm3] 3L_20229914_SNP [dm6]	C	A	2.674e^-4	0.736	UTR_3_PRIME Su_var_3-3
2R	16773956	2R_16773956_SNP [dm3] 2R_20886451_SNP [dm6]	G	C	2.682e^-4	0.736	INTRON otp
3L	18379035	3L_18379035_SNP [dm3] 3L_18385935_SNP [dm6]	T	C	2.685e^-4	0.736	INTERGENIC
2L	2698912	2L_2698912_SNP [dm3] 2L_2698912_SNP [dm6]	G	A	2.695e^-4	0.736	INTRON CG31690
3R	2009115	3R_2009115_DEL [dm3] 3R_6183393_DEL [dm6]	GTG	G	2.697e^-4	0.736	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	2880330	2L_2880330_SNP [dm3] 2L_2880330_SNP [dm6]	C	T	2.703e^-4	0.736	SYNONYMOUS_CODING betaggt-II DOWNSTREAM NTPase	TF binding site mE1_TFBS_chinmo
3R	25287399	3R_25287399_SNP [dm3] 3R_29461677_SNP [dm6]	A	G	2.711e^-4	0.736	UPSTREAM Ptp99A INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	1837655	3L_1837655_SNP [dm3] 3L_1837655_SNP [dm6]	A	T	2.715e^-4	0.736	INTERGENIC
2L	12951399	2L_12951399_SNP [dm3] 2L_12951399_SNP [dm6]	C	G	2.716e^-4	0.736	INTERGENIC
3R	23770478	3R_23770478_SNP [dm3] 3R_27944756_SNP [dm6]	T	C	2.719e^-4	0.736	INTRON mfrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	4731270	3L_4731270_SNP [dm3] 3L_4731270_SNP [dm6]	A	G	2.722e^-4	0.736	INTRON RhoGEF64C
3R	23733520	3R_23733520_SNP [dm3] 3R_27907798_SNP [dm6]	A	G	2.722e^-4	0.736	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	44968	3L_44968_DEL [dm3] 3L_44968_DEL [dm6]	GG	G	2.724e^-4	0.736	INTERGENIC
3L	16964222	3L_16964222_SNP [dm3] 3L_16971122_SNP [dm6]	A	G	2.730e^-4	0.736	INTRON Exn
3L	11878705	3L_11878705_SNP [dm3] 3L_11885605_SNP [dm6]	C	T	2.735e^-4	0.736	INTRON CG44837
3L	10341960	3L_10341960_SNP [dm3] 3L_10348860_SNP [dm6]	T	C	2.739e^-4	0.736	INTRON CR44327
3R	14001813	3R_14001813_SNP [dm3] 3R_18176091_SNP [dm6]	T	C	2.742e^-4	0.736	SYNONYMOUS_CODING PP2A-B'
3L	2330962	3L_2330962_SNP [dm3] 3L_2330962_SNP [dm6]	T	C	2.746e^-4	0.736	INTRON MsR1
X	17296176	X_17296176_SNP [dm3] X_17402143_SNP [dm6]	C	T	2.747e^-4	0.736	SYNONYMOUS_CODING B-H1 UTR_3_PRIME B-H1	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	24213730	3R_24213730_SNP [dm3] 3R_28388008_SNP [dm6]	C	G	2.750e^-4	0.736	INTERGENIC
3R	24870293	3R_24870293_SNP [dm3] 3R_29044571_SNP [dm6]	C	T	2.752e^-4	0.736	SYNONYMOUS_CODING Pkc98E	TF binding site mE1_TFBS_chinmo
2L	10542585	2L_10542585_SNP [dm3] 2L_10542585_SNP [dm6]	G	A	2.757e^-4	0.736	DOWNSTREAM CR44618 INTERGENIC
X	19074962	X_19074962_SNP [dm3] X_19180929_SNP [dm6]	A	G	2.762e^-4	0.736	SYNONYMOUS_CODING CG7453	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	21227496	3L_21227496_SNP [dm3] 3L_21234396_SNP [dm6]	A	G	2.765e^-4	0.736	INTRON Eip78C
3R	14404881	3R_14404881_SNP [dm3] 3R_18579159_SNP [dm6]	G	T	2.767e^-4	0.736	INTRON fray & 1 other
2R	2991950	2R_2991950_SNP [dm3] 2R_7104445_SNP [dm6]	T	C	2.774e^-4	0.736	INTRON esn
3R	14399025	3R_14399025_SNP [dm3] 3R_18573303_SNP [dm6]	C	T	2.777e^-4	0.736	UTR_5_PRIME CG7694 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	45124	3L_45124_DEL [dm3] 3L_45124_DEL [dm6]	TGC	T	2.780e^-4	0.736	INTERGENIC
3L	45129	3L_45129_DEL [dm3] 3L_45129_DEL [dm6]	CCG	C	2.780e^-4	0.736	INTERGENIC
3L	2330901	3L_2330901_SNP [dm3] 3L_2330901_SNP [dm6]	A	T	2.783e^-4	0.736	INTRON MsR1
3R	26898312	3R_26898312_DEL [dm3] 3R_31072590_DEL [dm6]	AT	A	2.784e^-4	0.736	INTRON Sox100B
2R	8205256	2R_8205256_SNP [dm3] 2R_12317751_SNP [dm6]	G	A	2.784e^-4	0.736	DOWNSTREAM CG30046 INTERGENIC
2R	16706228	2R_16706228_SNP [dm3] 2R_20818723_SNP [dm6]	G	T	2.797e^-4	0.736	INTERGENIC
2R	11352456	2R_11352456_SNP [dm3] 2R_15464951_SNP [dm6]	T	C	2.797e^-4	0.736	INTRON CG43729
2L	18972958	2L_18972958_SNP [dm3] 2L_18972958_SNP [dm6]	G	A	2.800e^-4	0.736	SYNONYMOUS_CODING CG10639 DOWNSTREAM Tango6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24796330	3R_24796330_SNP [dm3] 3R_28970608_SNP [dm6]	G	C	2.801e^-4	0.736	UPSTREAM CG14521 EXON CR45669	TF binding site mE1_TFBS_chinmo
2R	17488076	2R_17488076_SNP [dm3] 2R_21600571_SNP [dm6]	T	A	2.816e^-4	0.736	INTERGENIC
2L	7649060	2L_7649060_SNP [dm3] 2L_7649060_SNP [dm6]	G	A	2.819e^-4	0.736	SYNONYMOUS_CODING Slob
2L	3572114	2L_3572114_SNP [dm3] 2L_3572114_SNP [dm6]	T	A	2.823e^-4	0.736	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	3316146	3L_3316146_SNP [dm3] 3L_3316146_SNP [dm6]	T	A	2.830e^-4	0.736	UPSTREAM Drsl5 DOWNSTREAM Drsl3 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2L	14696946	2L_14696946_SNP [dm3] 2L_14696946_SNP [dm6]	T	C	2.840e^-4	0.736	INTERGENIC
2L	1910387	2L_1910387_INS [dm3] 2L_1910387_INS [dm6]	T	TGGT	2.847e^-4	0.736	INTRON CG7337	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	18981834	2L_18981834_SNP [dm3] 2L_18981834_SNP [dm6]	A	T	2.848e^-4	0.736	INTRON Swip-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	2993295	2R_2993295_SNP [dm3] 2R_7105790_SNP [dm6]	G	A	2.850e^-4	0.736	UPSTREAM esn INTRON esn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna
2L	2764248	2L_2764248_DEL [dm3] 2L_2764248_DEL [dm6]	AA	A	2.852e^-4	0.736	UTR_3_PRIME CG3077 DOWNSTREAM Trn-SR
X	10347421	X_10347421_SNP [dm3] X_10453388_SNP [dm6]	A	G	2.855e^-4	0.736	UPSTREAM CG32683 INTRON CG32683
2L	721570	2L_721570_SNP [dm3] 2L_721570_SNP [dm6]	G	C	2.858e^-4	0.736	INTERGENIC
2R	1346648	2R_1346648_DEL [dm3] 2R_5459143_DEL [dm6]	GGAGATG	G	2.861e^-4	0.736	INTERGENIC	transposable element FlyBase
2R	6873237	2R_6873237_SNP [dm3] 2R_10985732_SNP [dm6]	C	A	2.861e^-4	0.736	INTRON luna
3L	10341966	3L_10341966_SNP [dm3] 3L_10348866_SNP [dm6]	C	G	2.869e^-4	0.736	INTRON CR44327
3R	24806077	3R_24806077_SNP [dm3] 3R_28980355_SNP [dm6]	C	T	2.874e^-4	0.736	INTERGENIC
3L	3296080	3L_3296080_SNP [dm3] 3L_3296080_SNP [dm6]	A	C	2.878e^-4	0.736	NON_SYNONYMOUS_CODING CG12009	TF binding site mE1_TFBS_cad
2L	14562732	2L_14562732_SNP [dm3] 2L_14562732_SNP [dm6]	G	C	2.880e^-4	0.736	DOWNSTREAM CG3473 INTERGENIC
3R	14882170	3R_14882170_SNP [dm3] 3R_19056448_SNP [dm6]	A	T	2.887e^-4	0.736	INTRON cdi
3L	10341876	3L_10341876_SNP [dm3] 3L_10348776_SNP [dm6]	T	C	2.892e^-4	0.736	INTRON CR44327
3L	10341946	3L_10341946_SNP [dm3] 3L_10348846_SNP [dm6]	G	A	2.893e^-4	0.736	INTRON CR44327
2L	632750	2L_632750_SNP [dm3] 2L_632750_SNP [dm6]	C	A	2.896e^-4	0.736	INTERGENIC
3R	7301964	3R_7301964_SNP [dm3] 3R_11476242_SNP [dm6]	C	A	2.903e^-4	0.736	INTERGENIC
3R	21156976	3R_21156976_SNP [dm3] 3R_25331254_SNP [dm6]	A	G	2.903e^-4	0.736	UPSTREAM CHKov2 DOWNSTREAM CG10669 INTERGENIC
3R	10429416	3R_10429416_SNP [dm3] 3R_14603694_SNP [dm6]	T	C	2.903e^-4	0.736	INTRON stumps
2R	16584214	2R_16584214_SNP [dm3] 2R_20696709_SNP [dm6]	T	C	2.904e^-4	0.736	INTERGENIC
X	14550801	X_14550801_SNP [dm3] X_14656768_SNP [dm6]	C	A	2.905e^-4	0.736	INTERGENIC
3R	16726056	3R_16726056_SNP [dm3] 3R_20900334_SNP [dm6]	T	A	2.907e^-4	0.736	INTERGENIC
2L	13232410	2L_13232410_SNP [dm3] 2L_13232410_SNP [dm6]	A	T	2.913e^-4	0.736	SYNONYMOUS_CODING Prosalpha6T	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	5256494	3L_5256494_SNP [dm3] 3L_5263394_SNP [dm6]	G	T	2.914e^-4	0.736	INTRON shep
3L	22510134	3L_22510134_SNP [dm3] 3L_22517034_SNP [dm6]	G	A	2.915e^-4	0.736	INTERGENIC
2L	13739265	2L_13739265_SNP [dm3] 2L_13739265_SNP [dm6]	G	C	2.920e^-4	0.736	INTERGENIC
3L	15652788	3L_15652788_SNP [dm3] 3L_15659688_SNP [dm6]	G	A	2.929e^-4	0.736	UPSTREAM Eig71Ei & 1 other DOWNSTREAM Eig71Ej INTERGENIC
2L	13358276	2L_13358276_SNP [dm3] 2L_13358276_SNP [dm6]	G	C	2.931e^-4	0.736	INTERGENIC
3R	19698378	3R_19698378_SNP [dm3] 3R_23872656_SNP [dm6]	C	G	2.942e^-4	0.736	INTRON Pli	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	6425088	3R_6425088_SNP [dm3] 3R_10599366_SNP [dm6]	A	C	2.947e^-4	0.736	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2766575	2L_2766575_SNP [dm3] 2L_2766575_SNP [dm6]	G	A	2.951e^-4	0.736	SYNONYMOUS_CODING aph-1 UPSTREAM CG3077 DOWNSTREAM Taf10b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	6372182	3L_6372182_SNP [dm3] 3L_6379082_SNP [dm6]	T	A	2.960e^-4	0.736	INTERGENIC
X	19779972	X_19779972_SNP [dm3] X_19885939_SNP [dm6]	C	G	2.960e^-4	0.736	DOWNSTREAM amn INTRON Hers	TF binding site BDTNP1_TFBS_dl
3R	16848179	3R_16848179_SNP [dm3] 3R_21022457_SNP [dm6]	T	G	2.960e^-4	0.736	INTRON CG17278
3L	18929852	3L_18929852_SNP [dm3] 3L_18936752_SNP [dm6]	G	T	2.960e^-4	0.736	INTRON CG32204
3L	4731304	3L_4731304_SNP [dm3] 3L_4731304_SNP [dm6]	G	A	2.968e^-4	0.736	INTRON RhoGEF64C
2R	11976353	2R_11976353_SNP [dm3] 2R_16088848_SNP [dm6]	T	G	2.971e^-4	0.736	INTRON Dg
X	12493539	X_12493539_SNP [dm3] X_12599506_SNP [dm6]	C	T	2.973e^-4	0.736	SYNONYMOUS_CODING Sec16	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	6468209	X_6468209_SNP [dm3] X_6574176_SNP [dm6]	C	T	2.979e^-4	0.736	INTRON CG34417
2L	3052943	2L_3052943_SNP [dm3] 2L_3052943_SNP [dm6]	T	C	2.981e^-4	0.736	SYNONYMOUS_CODING v_2_k05816	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26039421	3R_26039421_SNP [dm3] 3R_30213699_SNP [dm6]	A	G	2.984e^-4	0.736	SYNONYMOUS_CODING CecB DOWNSTREAM Cec2
3L	15651195	3L_15651195_SNP [dm3] 3L_15658095_SNP [dm6]	G	T	2.991e^-4	0.736	UTR_3_PRIME Eig71Eg UPSTREAM Eig71Ef DOWNSTREAM Eig71Eh
2R	15550113	2R_15550113_SNP [dm3] 2R_19662608_SNP [dm6]	G	A	3.002e^-4	0.736	UPSTREAM mir-3 & 2 others INTRON CG11018	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1273210	2L_1273210_SNP [dm3] 2L_1273210_SNP [dm6]	T	C	3.011e^-4	0.736	INTRON robo3	TF binding site mE1_TFBS_chinmo
X	10316840	X_10316840_SNP [dm3] X_10422807_SNP [dm6]	A	T	3.015e^-4	0.736	INTRON CG32683
3R	7522260	3R_7522260_SNP [dm3] 3R_11696538_SNP [dm6]	C	T	3.016e^-4	0.736	START_GAINED CG14717 UTR_5_PRIME CG14717
3L	4731297	3L_4731297_SNP [dm3] 3L_4731297_SNP [dm6]	G	C	3.020e^-4	0.736	INTRON RhoGEF64C
3R	3897293	3R_3897293_SNP [dm3] 3R_8071571_SNP [dm6]	T	C	3.029e^-4	0.736	INTRON mAChR-B	TF binding site BDTNP1_TFBS_dl
3R	25409079	3R_25409079_SNP [dm3] 3R_29583357_SNP [dm6]	G	T	3.033e^-4	0.736	INTERGENIC
3R	25346556	3R_25346556_SNP [dm3] 3R_29520834_SNP [dm6]	C	A	3.034e^-4	0.736	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	1198623	X_1198623_SNP [dm3] X_1304590_SNP [dm6]	A	G	3.039e^-4	0.736	INTRON DAAM
3L	12722162	3L_12722162_SNP [dm3] 3L_12729062_SNP [dm6]	T	C	3.043e^-4	0.736	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9665886	2L_9665886_SNP [dm3] 2L_9665886_SNP [dm6]	A	C	3.048e^-4	0.736	INTERGENIC
3L	20165051	3L_20165051_SNP [dm3] 3L_20171951_SNP [dm6]	T	C	3.050e^-4	0.736	INTRON CG42674	TF binding site BDTNP1_TFBS_twi
2L	13251246	2L_13251246_SNP [dm3] 2L_13251246_SNP [dm6]	C	A	3.053e^-4	0.736	UPSTREAM CG31728 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	14879937	3R_14879937_DEL [dm3] 3R_19054215_DEL [dm6]	CGGC	C	3.057e^-4	0.736	INTRON cdi	TF binding site BDTNP1_TFBS_twi
2L	12959885	2L_12959885_SNP [dm3] 2L_12959885_SNP [dm6]	C	T	3.066e^-4	0.736	INTERGENIC
3R	12780707	3R_12780707_SNP [dm3] 3R_16954985_SNP [dm6]	T	C	3.066e^-4	0.736	INTRON Abd-B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	14035974	X_14035974_DEL [dm3] X_14141941_DEL [dm6]	TT	T	3.070e^-4	0.736	EXON CR44658
2L	1054444	2L_1054444_DEL [dm3] 2L_1054444_DEL [dm6]	TTT	T	3.070e^-4	0.736	INTRON S	TF binding site BDTNP1_TFBS_twi
3R	6246238	3R_6246238_SNP [dm3] 3R_10420516_SNP [dm6]	A	T	3.074e^-4	0.736	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1055790	2L_1055790_DEL [dm3] 2L_1055790_DEL [dm6]	GTAGTTTGGCTCGGTTGGTC...	A	3.075e^-4	0.736	INTRON S
X	15527230	X_15527230_SNP [dm3] X_15633197_SNP [dm6]	A	C	3.082e^-4	0.736	START_GAINED sog UTR_5_PRIME sog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9665909	2L_9665909_SNP [dm3] 2L_9665909_SNP [dm6]	G	A	3.083e^-4	0.736	INTERGENIC
3R	25327771	3R_25327771_SNP [dm3] 3R_29502049_SNP [dm6]	T	A	3.086e^-4	0.736	NON_SYNONYMOUS_CODING Trc8	TF binding site mE1_TFBS_chinmo
3L	10748797	3L_10748797_SNP [dm3] 3L_10755697_SNP [dm6]	T	A	3.092e^-4	0.736	INTERGENIC
2R	11307124	2R_11307124_SNP [dm3] 2R_15419619_SNP [dm6]	A	T	3.097e^-4	0.736	INTRON CG43729
3R	7522249	3R_7522249_SNP [dm3] 3R_11696527_SNP [dm6]	T	G	3.097e^-4	0.736	UTR_5_PRIME CG14717
2L	14441035	2L_14441035_SNP [dm3] 2L_14441035_SNP [dm6]	T	A	3.098e^-4	0.736	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15802220	3L_15802220_DEL [dm3] 3L_15809120_DEL [dm6]	TA	T	3.105e^-4	0.736	UPSTREAM CG13445 DOWNSTREAM CG6244 & 1 other INTERGENIC
3R	14000438	3R_14000438_SNP [dm3] 3R_18174716_SNP [dm6]	C	T	3.105e^-4	0.736	SYNONYMOUS_CODING PP2A-B' INTRON PP2A-B'
3L	18155170	3L_18155170_SNP [dm3] 3L_18162070_SNP [dm6]	C	A	3.108e^-4	0.736	INTRON CG13699
3L	5845082	3L_5845082_SNP [dm3] 3L_5851982_SNP [dm6]	G	A	3.109e^-4	0.736	INTERGENIC
3L	11478647	3L_11478647_SNP [dm3] 3L_11485547_SNP [dm6]	A	T	3.113e^-4	0.736	INTERGENIC
3R	10004289	3R_10004289_SNP [dm3] 3R_14178567_SNP [dm6]	G	C	3.119e^-4	0.736	INTRON Dop1R1
3L	10526536	3L_10526536_SNP [dm3] 3L_10533436_SNP [dm6]	G	T	3.120e^-4	0.736	INTRON A2bp1
3L	2331197	3L_2331197_SNP [dm3] 3L_2331197_SNP [dm6]	A	G	3.121e^-4	0.736	INTRON MsR1
3R	14398711	3R_14398711_SNP [dm3] 3R_18572989_SNP [dm6]	C	G	3.122e^-4	0.736	UPSTREAM CG7694 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	16964715	3L_16964715_SNP [dm3] 3L_16971615_SNP [dm6]	C	T	3.126e^-4	0.736	INTRON Exn
3R	10434567	3R_10434567_SNP [dm3] 3R_14608845_SNP [dm6]	C	T	3.130e^-4	0.736	UPSTREAM CG14853 DOWNSTREAM stumps INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	4787186	3L_4787186_SNP [dm3] 3L_4787186_SNP [dm6]	A	T	3.138e^-4	0.736	INTRON RhoGEF64C
3R	17234205	3R_17234205_SNP [dm3] 3R_21408483_SNP [dm6]	G	C	3.143e^-4	0.736	UPSTREAM CheB93b DOWNSTREAM CheB93a INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	24289331	3L_24289331_SNP [dm3] 3L_24296231_SNP [dm6]	T	C	3.147e^-4	0.736	INTRON Snap25
3L	10748769	3L_10748769_SNP [dm3] 3L_10755669_SNP [dm6]	C	T	3.159e^-4	0.736	INTERGENIC
3R	25210632	3R_25210632_SNP [dm3] 3R_29384910_SNP [dm6]	C	T	3.161e^-4	0.736	INTRON Ptp99A
2L	9727817	2L_9727817_SNP [dm3] 2L_9727817_SNP [dm6]	T	C	3.169e^-4	0.736	INTRON Nckx30C
2L	1733707	2L_1733707_SNP [dm3] 2L_1733707_SNP [dm6]	C	A	3.172e^-4	0.736	INTRON CG17646
3R	15334177	3R_15334177_INS [dm3] 3R_19508455_INS [dm6]	G	GAAG	3.173e^-4	0.736	UPSTREAM Dys INTRON Dys
3R	10270698	3R_10270698_SNP [dm3] 3R_14444976_SNP [dm6]	C	T	3.176e^-4	0.736	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22683322	3R_22683322_SNP [dm3] 3R_26857600_SNP [dm6]	G	T	3.181e^-4	0.736	INTRON Lerp
X	11306714	X_11306714_SNP [dm3] X_11412681_SNP [dm6]	T	A	3.183e^-4	0.736	SYNONYMOUS_CODING Gr10b DOWNSTREAM Gr10a
2L	22257594	2L_22257594_SNP [dm3] 2L_22257594_SNP [dm6]	T	A	3.185e^-4	0.736	INTRON Tif-IA	TF binding site BDTNP1_TFBS_dl
X	13342142	X_13342142_INS [dm3] X_13448109_INS [dm6]	T	TATT	3.192e^-4	0.736	INTRON Neto
3R	7407583	3R_7407583_SNP [dm3] 3R_11581861_SNP [dm6]	T	A	3.194e^-4	0.736	DOWNSTREAM CG5342 INTRON wkd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	14780425	3R_14780425_SNP [dm3] 3R_18954703_SNP [dm6]	T	C	3.197e^-4	0.736	INTRON CG42613 & 1 other
2L	17232266	2L_17232266_SNP [dm3] 2L_17232266_SNP [dm6]	T	A	3.198e^-4	0.736	INTRON beat-IIIc
2L	1110345	2L_1110345_SNP [dm3] 2L_1110345_SNP [dm6]	C	T	3.209e^-4	0.736	SYNONYMOUS_CODING CG14339
2R	7432927	2R_7432927_SNP [dm3] 2R_11545422_SNP [dm6]	G	T	3.210e^-4	0.736	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_chinmo
3L	44565	3L_44565_INS [dm3] 3L_44565_INS [dm6]	A	TG	3.211e^-4	0.736	INTERGENIC
3R	2009120	3R_2009120_SNP [dm3] 3R_6183398_SNP [dm6]	T	C	3.229e^-4	0.736	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	20582866	3L_20582866_SNP [dm3] 3L_20589766_SNP [dm6]	G	T	3.233e^-4	0.736	INTERGENIC
3R	18722421	3R_18722421_SNP [dm3] 3R_22896699_SNP [dm6]	T	G	3.234e^-4	0.736	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	12582927	2L_12582927_SNP [dm3] 2L_12582927_SNP [dm6]	C	T	3.235e^-4	0.736	DOWNSTREAM CR44596 EXON CR44595
2L	14426934	2L_14426934_SNP [dm3] 2L_14426934_SNP [dm6]	C	A	3.236e^-4	0.736	INTERGENIC
2L	9727801	2L_9727801_SNP [dm3] 2L_9727801_SNP [dm6]	T	C	3.242e^-4	0.736	INTRON Nckx30C
3L	15509221	3L_15509221_SNP [dm3] 3L_15516121_SNP [dm6]	A	G	3.248e^-4	0.736	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	14879951	3R_14879951_DEL [dm3] 3R_19054229_DEL [dm6]	GCTA	G	3.259e^-4	0.736	INTRON cdi	TF binding site BDTNP1_TFBS_twi
2L	2768945	2L_2768945_SNP [dm3] 2L_2768945_SNP [dm6]	T	C	3.260e^-4	0.736	SYNONYMOUS_CODING colt DOWNSTREAM Taf10	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2L	6134840	2L_6134840_SNP [dm3] 2L_6134840_SNP [dm6]	A	G	3.266e^-4	0.736	INTERGENIC
X	4962522	X_4962522_SNP [dm3] X_5068489_SNP [dm6]	T	C	3.269e^-4	0.736	SYNONYMOUS_CODING ovo	TF binding site mE1_TFBS_chinmo
3R	22011903	3R_22011903_SNP [dm3] 3R_26186181_SNP [dm6]	A	C	3.273e^-4	0.736	UTR_3_PRIME CG31323 & 1 other DOWNSTREAM CG6073
X	19210079	X_19210079_DEL [dm3] X_19316046_DEL [dm6]	TATT	T	3.275e^-4	0.736	INTRON out	TF binding site mE1_TFBS_Trl
3L	3681603	3L_3681603_SNP [dm3] 3L_3681603_SNP [dm6]	C	T	3.284e^-4	0.736	INTERGENIC
3R	23729969	3R_23729969_SNP [dm3] 3R_27904247_SNP [dm6]	T	A	3.286e^-4	0.736	INTRON CG34353
2L	9665906	2L_9665906_SNP [dm3] 2L_9665906_SNP [dm6]	T	A	3.288e^-4	0.736	INTERGENIC
2L	9665907	2L_9665907_SNP [dm3] 2L_9665907_SNP [dm6]	C	G	3.288e^-4	0.736	INTERGENIC
2L	9665924	2L_9665924_SNP [dm3] 2L_9665924_SNP [dm6]	T	A	3.288e^-4	0.736	INTERGENIC
3L	19429266	3L_19429266_SNP [dm3] 3L_19436166_SNP [dm6]	C	T	3.303e^-4	0.736	INTERGENIC
X	7853443	X_7853443_SNP [dm3] X_7959410_SNP [dm6]	T	G	3.306e^-4	0.736	UPSTREAM sws INTRON sws EXON CR45620	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	4271629	3L_4271629_SNP [dm3] 3L_4271629_SNP [dm6]	C	T	3.310e^-4	0.736	INTRON CG1273
2L	2765894	2L_2765894_SNP [dm3] 2L_2765894_SNP [dm6]	T	C	3.318e^-4	0.736	UPSTREAM aph-1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_en mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3L	16964257	3L_16964257_SNP [dm3] 3L_16971157_SNP [dm6]	T	C	3.322e^-4	0.736	INTRON Exn
2R	1345350	2R_1345350_SNP [dm3] 2R_5457845_SNP [dm6]	T	C	3.335e^-4	0.736	INTERGENIC	transposable element FlyBase
2L	9665773	2L_9665773_SNP [dm3] 2L_9665773_SNP [dm6]	G	A	3.336e^-4	0.736	INTERGENIC
2R	17588667	2R_17588667_SNP [dm3] 2R_21701162_SNP [dm6]	T	A	3.337e^-4	0.736	UPSTREAM HmgD INTRON HmgZ	TF binding site BDTNP1_TFBS_dl
3L	15266318	3L_15266318_SNP [dm3] 3L_15273218_SNP [dm6]	A	T	3.339e^-4	0.736	INTERGENIC
3R	7705840	3R_7705840_SNP [dm3] 3R_11880118_SNP [dm6]	G	T	3.340e^-4	0.736	DOWNSTREAM sad INTRON CG6962	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	26578301	3R_26578301_SNP [dm3] 3R_30752579_SNP [dm6]	T	A	3.342e^-4	0.736	INTERGENIC
2L	14276326	2L_14276326_SNP [dm3] 2L_14276326_SNP [dm6]	T	G	3.365e^-4	0.736	UPSTREAM CG32971 INTRON wb & 1 other
3R	10434525	3R_10434525_SNP [dm3] 3R_14608803_SNP [dm6]	T	C	3.365e^-4	0.736	UPSTREAM CG14853 DOWNSTREAM stumps INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	23852954	3R_23852954_SNP [dm3] 3R_28027232_SNP [dm6]	T	C	3.366e^-4	0.736	INTRON CG34362
X	6724352	X_6724352_SNP [dm3] X_6830319_SNP [dm6]	C	T	3.368e^-4	0.736	SYNONYMOUS_CODING nonC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18878207	2L_18878207_SNP [dm3] 2L_18878207_SNP [dm6]	A	T	3.368e^-4	0.736	INTRON tup	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
X	3791337	X_3791337_SNP [dm3] X_3897304_SNP [dm6]	T	A	3.368e^-4	0.736	INTRON CG42541
X	3791372	X_3791372_SNP [dm3] X_3897339_SNP [dm6]	C	T	3.368e^-4	0.736	INTRON CG42541
3L	16158276	3L_16158276_SNP [dm3] 3L_16165176_SNP [dm6]	C	A	3.383e^-4	0.736	UPSTREAM CG5151 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
3L	17983867	3L_17983867_SNP [dm3] 3L_17990767_SNP [dm6]	A	T	3.390e^-4	0.736	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	18140343	3L_18140343_SNP [dm3] 3L_18147243_SNP [dm6]	G	A	3.391e^-4	0.736	INTERGENIC
3R	25616995	3R_25616995_SNP [dm3] 3R_29791273_SNP [dm6]	G	C	3.394e^-4	0.736	INTRON kay	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18151646	3L_18151646_SNP [dm3] 3L_18158546_SNP [dm6]	T	C	3.395e^-4	0.736	NON_SYNONYMOUS_CODING CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9574108	2R_9574108_SNP [dm3] 2R_13686603_SNP [dm6]	T	C	3.395e^-4	0.736	INTRON fas
X	3978439	X_3978439_SNP [dm3] X_4084406_SNP [dm6]	G	A	3.395e^-4	0.736	INTRON CG43689	TF binding site mE1_TFBS_chinmo
3R	23484308	3R_23484308_SNP [dm3] 3R_27658586_SNP [dm6]	T	G	3.396e^-4	0.736	INTRON Mlc1	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
2L	13873202	2L_13873202_SNP [dm3] 2L_13873202_SNP [dm6]	C	T	3.396e^-4	0.736	INTRON CenG1A
3R	23882236	3R_23882236_SNP [dm3] 3R_28056514_SNP [dm6]	C	T	3.401e^-4	0.736	INTRON CG34362
3L	14329341	3L_14329341_SNP [dm3] 3L_14336241_SNP [dm6]	C	A	3.404e^-4	0.736	INTRON fz
3L	5256475	3L_5256475_SNP [dm3] 3L_5263375_SNP [dm6]	G	T	3.407e^-4	0.736	INTRON shep
3L	19429181	3L_19429181_SNP [dm3] 3L_19436081_SNP [dm6]	C	T	3.409e^-4	0.736	INTERGENIC
3R	14398384	3R_14398384_SNP [dm3] 3R_18572662_SNP [dm6]	G	C	3.410e^-4	0.736	UPSTREAM CG7694 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	15114203	3R_15114203_SNP [dm3] 3R_19288481_SNP [dm6]	A	G	3.410e^-4	0.736	EXON CR43451
2R	1346702	2R_1346702_SNP [dm3] 2R_5459197_SNP [dm6]	C	T	3.411e^-4	0.736	INTERGENIC	transposable element FlyBase
2L	6287926	2L_6287926_SNP [dm3] 2L_6287926_SNP [dm6]	T	G	3.415e^-4	0.736	INTRON Ddr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14966952	2L_14966952_SNP [dm3] 2L_14966952_SNP [dm6]	G	C	3.418e^-4	0.736	INTRON CG42313
3L	13070200	3L_13070200_SNP [dm3] 3L_13077100_SNP [dm6]	T	C	3.419e^-4	0.736	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	50759	3L_50759_SNP [dm3] 3L_50759_SNP [dm6]	G	T	3.420e^-4	0.736	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	2698878	2L_2698878_SNP [dm3] 2L_2698878_SNP [dm6]	C	T	3.424e^-4	0.736	INTRON CG31690
3L	10168861	3L_10168861_SNP [dm3] 3L_10175761_SNP [dm6]	A	G	3.432e^-4	0.736	INTRON dpr10
3L	15520977	3L_15520977_SNP [dm3] 3L_15527877_SNP [dm6]	G	T	3.437e^-4	0.736	NON_SYNONYMOUS_CODING CG42728 UPSTREAM CG42729 DOWNSTREAM obst-H	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
X	18937601	X_18937601_SNP [dm3] X_19043568_SNP [dm6]	G	C	3.439e^-4	0.736	INTERGENIC
3R	24697755	3R_24697755_SNP [dm3] 3R_28872033_SNP [dm6]	G	T	3.447e^-4	0.737	SYNONYMOUS_CODING CG33203 UPSTREAM CG14529	TF binding site mE1_TFBS_chinmo
3R	19819721	3R_19819721_SNP [dm3] 3R_23993999_SNP [dm6]	G	A	3.457e^-4	0.737	UTR_5_PRIME Rab7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	45154	3L_45154_INS [dm3] 3L_45154_INS [dm6]	T	GG	3.458e^-4	0.737	INTERGENIC
3L	3316104	3L_3316104_SNP [dm3] 3L_3316104_SNP [dm6]	A	T	3.463e^-4	0.737	UPSTREAM Drsl5 DOWNSTREAM Drsl3 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2L	14056045	2L_14056045_SNP [dm3] 2L_14056045_SNP [dm6]	C	G	3.465e^-4	0.737	INTRON nAChRalpha5
2L	21702290	2L_21702290_SNP [dm3] 2L_21702290_SNP [dm6]	A	G	3.467e^-4	0.737	INTRON CG31619
X	14465065	X_14465065_SNP [dm3] X_14571032_SNP [dm6]	T	A	3.478e^-4	0.739	INTERGENIC
2L	1689976	2L_1689976_SNP [dm3] 2L_1689976_SNP [dm6]	A	G	3.495e^-4	0.74	INTRON chinmo
X	11306757	X_11306757_SNP [dm3] X_11412724_SNP [dm6]	A	T	3.497e^-4	0.74	NON_SYNONYMOUS_CODING Gr10b DOWNSTREAM Gr10a
3L	887428	3L_887428_SNP [dm3] 3L_887428_SNP [dm6]	G	T	3.498e^-4	0.74	UPSTREAM CG32479 INTRON CG32479
3R	27070622	3R_27070622_INS [dm3] 3R_31244900_INS [dm6]	T	TT	3.500e^-4	0.74	INTRON qless
2R	18977547	2R_18977547_SNP [dm3] 2R_23090024_SNP [dm6]	T	C	3.507e^-4	0.74	DOWNSTREAM CG9876 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	10906155	3R_10906155_SNP [dm3] 3R_15080433_SNP [dm6]	G	T	3.508e^-4	0.74	UTR_3_PRIME CG6966 DOWNSTREAM CG6966
3L	20162022	3L_20162022_SNP [dm3] 3L_20168922_SNP [dm6]	T	C	3.527e^-4	0.743	UTR_5_PRIME CG42674 INTRON CG42674	TF binding site BDTNP1_TFBS_twi
2L	14071154	2L_14071154_SNP [dm3] 2L_14071154_SNP [dm6]	A	T	3.532e^-4	0.743	INTRON nAChRalpha5
X	188403	X_188403_SNP [dm3] X_294370_SNP [dm6]	A	C	3.554e^-4	0.747	INTRON CG3777 & 1 other
3L	8607827	3L_8607827_SNP [dm3] 3L_8614727_SNP [dm6]	C	T	3.567e^-4	0.747	SYNONYMOUS_CODING CG6282
2L	9660798	2L_9660798_SNP [dm3] 2L_9660798_SNP [dm6]	A	C	3.567e^-4	0.747	INTERGENIC
2R	17588665	2R_17588665_SNP [dm3] 2R_21701160_SNP [dm6]	G	T	3.571e^-4	0.747	UPSTREAM HmgD INTRON HmgZ	TF binding site BDTNP1_TFBS_dl
X	11732089	X_11732089_SNP [dm3] X_11838056_SNP [dm6]	T	C	3.573e^-4	0.747	UPSTREAM CG15741 DOWNSTREAM rudhira & 1 other INTERGENIC
3L	10446366	3L_10446366_SNP [dm3] 3L_10453266_SNP [dm6]	G	A	3.574e^-4	0.747	INTERGENIC
2L	2699539	2L_2699539_SNP [dm3] 2L_2699539_SNP [dm6]	C	T	3.586e^-4	0.749	INTRON CG31690
2L	13745473	2L_13745473_SNP [dm3] 2L_13745473_SNP [dm6]	C	G	3.591e^-4	0.749	INTERGENIC
X	16954282	X_16954282_SNP [dm3] X_17060249_SNP [dm6]	C	T	3.595e^-4	0.749	INTRON CG45002
3R	14810902	3R_14810902_SNP [dm3] 3R_18985180_SNP [dm6]	C	T	3.602e^-4	0.749	INTRON gukh	TF binding site BDTNP1_TFBS_dl
3L	19429176	3L_19429176_SNP [dm3] 3L_19436076_SNP [dm6]	G	C	3.604e^-4	0.749	INTERGENIC
2L	2671041	2L_2671041_SNP [dm3] 2L_2671041_SNP [dm6]	A	G	3.610e^-4	0.749	NON_SYNONYMOUS_CODING Gr23a INTRON Gr23a	TF binding site mE1_TFBS_sens
2R	15549854	2R_15549854_SNP [dm3] 2R_19662349_SNP [dm6]	T	C	3.612e^-4	0.749	UPSTREAM mir-4 & 5 others INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	19022296	2R_19022296_SNP [dm3] 2R_23134773_SNP [dm6]	A	C	3.629e^-4	0.752	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	19447129	3R_19447129_SNP [dm3] 3R_23621407_SNP [dm6]	A	G	3.642e^-4	0.752	INTRON CG31145
3L	3370609	3L_3370609_SNP [dm3] 3L_3370609_SNP [dm6]	T	G	3.648e^-4	0.752	UTR_3_PRIME YT521-B DOWNSTREAM Drs & 1 other
X	5718788	X_5718788_SNP [dm3] X_5824755_SNP [dm6]	T	C	3.654e^-4	0.752	INTRON CG15765	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	396953	2R_396953_DEL [dm3] 2R_4509448_DEL [dm6]	GCGTAGAAAAGAGCTGTTCG...	A	3.654e^-4	0.752	INTERGENIC	transposable element FlyBase
2L	4116286	2L_4116286_SNP [dm3] 2L_4116286_SNP [dm6]	C	A	3.655e^-4	0.752	DOWNSTREAM ed INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	12033122	2L_12033122_SNP [dm3] 2L_12033122_SNP [dm6]	T	C	3.661e^-4	0.752	SYNONYMOUS_CODING dmGlut	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21852541	X_21852541_SNP [dm3] X_22450705_SNP [dm6]	A	C	3.666e^-4	0.752	SYNONYMOUS_CODING tilB DOWNSTREAM wap	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18941996	2L_18941996_SNP [dm3] 2L_18941996_SNP [dm6]	A	G	3.668e^-4	0.752	NON_SYNONYMOUS_CODING ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9276682	2L_9276682_SNP [dm3] 2L_9276682_SNP [dm6]	T	A	3.674e^-4	0.752	INTRON Ggamma30A
3R	4919462	3R_4919462_SNP [dm3] 3R_9093740_SNP [dm6]	C	T	3.677e^-4	0.752	INTRON pum
3L	3980515	3L_3980515_SNP [dm3] 3L_3980515_SNP [dm6]	C	T	3.683e^-4	0.752	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17180108	2L_17180108_SNP [dm3] 2L_17180108_SNP [dm6]	G	A	3.684e^-4	0.752	UPSTREAM Gr36c DOWNSTREAM Gr36b INTERGENIC
3R	11550616	3R_11550616_SNP [dm3] 3R_15724894_SNP [dm6]	T	C	3.686e^-4	0.752	INTERGENIC
3R	20298647	3R_20298647_SNP [dm3] 3R_24472925_SNP [dm6]	A	C	3.697e^-4	0.752	INTERGENIC
X	13038613	X_13038613_SNP [dm3] X_13144580_SNP [dm6]	C	T	3.702e^-4	0.752	INTRON CG32645
3L	1709665	3L_1709665_INS [dm3] 3L_1709665_INS [dm6]	G	GG	3.705e^-4	0.752	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	8951461	3L_8951461_SNP [dm3] 3L_8958361_SNP [dm6]	C	G	3.711e^-4	0.752	UPSTREAM CG13313 DOWNSTREAM mRpL12 INTERGENIC
3R	20368380	3R_20368380_SNP [dm3] 3R_24542658_SNP [dm6]	C	T	3.711e^-4	0.752	INTRON CG5789
3L	20195043	3L_20195043_SNP [dm3] 3L_20201943_SNP [dm6]	G	C	3.712e^-4	0.752	UPSTREAM obst-F DOWNSTREAM CG7298 INTERGENIC
3R	19538077	3R_19538077_SNP [dm3] 3R_23712355_SNP [dm6]	C	T	3.713e^-4	0.752	SYNONYMOUS_CODING CG10300 DOWNSTREAM nau
3R	19590104	3R_19590104_SNP [dm3] 3R_23764382_SNP [dm6]	C	T	3.715e^-4	0.752	SPLICE_SITE_REGION Lsd-1 UTR_5_PRIME Lsd-1 INTRON Lsd-1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3075785	3L_3075785_SNP [dm3] 3L_3075785_SNP [dm6]	C	T	3.725e^-4	0.752	INTRON CG11486	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13721699	3R_13721699_SNP [dm3] 3R_17895977_SNP [dm6]	A	G	3.727e^-4	0.752	INTRON Rim	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24817419	3R_24817419_SNP [dm3] 3R_28991697_SNP [dm6]	A	G	3.735e^-4	0.752	INTERGENIC
2L	9665826	2L_9665826_SNP [dm3] 2L_9665826_SNP [dm6]	T	A	3.738e^-4	0.752	INTERGENIC
X	5741616	X_5741616_SNP [dm3] X_5847583_SNP [dm6]	G	C	3.739e^-4	0.752	INTERGENIC
2L	2698654	2L_2698654_SNP [dm3] 2L_2698654_SNP [dm6]	A	G	3.745e^-4	0.752	INTRON CG31690
3L	15788687	3L_15788687_SNP [dm3] 3L_15795587_SNP [dm6]	T	C	3.746e^-4	0.752	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_D
3R	22851675	3R_22851675_SNP [dm3] 3R_27025953_SNP [dm6]	G	C	3.752e^-4	0.752	SYNONYMOUS_CODING CG6271 INTRON RYa-R
2L	13411777	2L_13411777_SNP [dm3] 2L_13411777_SNP [dm6]	C	T	3.757e^-4	0.752	UPSTREAM CG16848 & 1 other DOWNSTREAM CG7110 INTERGENIC
X	4364719	X_4364719_SNP [dm3] X_4470686_SNP [dm6]	A	G	3.758e^-4	0.752	INTRON bi & 1 other
X	3794298	X_3794298_SNP [dm3] X_3900265_SNP [dm6]	G	C	3.759e^-4	0.752	INTRON CG42541
X	6479421	X_6479421_SNP [dm3] X_6585388_SNP [dm6]	C	T	3.766e^-4	0.753	UTR_3_PRIME CG34417 INTRON CG34417
3L	5020771	3L_5020771_SNP [dm3] 3L_5020771_SNP [dm6]	A	G	3.773e^-4	0.753	INTRON Con
3R	22024841	3R_22024841_SNP [dm3] 3R_26199119_SNP [dm6]	G	A	3.777e^-4	0.753	INTRON CR44320
2L	10023938	2L_10023938_SNP [dm3] 2L_10023938_SNP [dm6]	A	G	3.783e^-4	0.753	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	23952968	3R_23952968_SNP [dm3] 3R_28127246_SNP [dm6]	T	A	3.794e^-4	0.753	INTERGENIC	TF binding site mE1_TFBS_inv
3L	1997032	3L_1997032_SNP [dm3] 3L_1997032_SNP [dm6]	C	A	3.794e^-4	0.753	INTERGENIC
3L	8622239	3L_8622239_SNP [dm3] 3L_8629139_SNP [dm6]	A	T	3.794e^-4	0.753	INTRON Zasp66	TF binding site BDTNP1_TFBS_da
3L	3316140	3L_3316140_SNP [dm3] 3L_3316140_SNP [dm6]	A	C	3.798e^-4	0.753	UPSTREAM Drsl5 DOWNSTREAM Drsl3 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3R	23207928	3R_23207928_SNP [dm3] 3R_27382206_SNP [dm6]	G	A	3.799e^-4	0.753	UTR_3_PRIME side INTRON side	TF binding site mE1_TFBS_chinmo
3L	3027133	3L_3027133_DEL [dm3] 3L_3027133_DEL [dm6]	AA	A	3.807e^-4	0.754	UPSTREAM aly INTERGENIC
3R	10196219	3R_10196219_SNP [dm3] 3R_14370497_SNP [dm6]	C	T	3.825e^-4	0.754	UPSTREAM NK7.1 INTRON NK7.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3L	885421	3L_885421_SNP [dm3] 3L_885421_SNP [dm6]	T	A	3.834e^-4	0.754	INTRON CG32479
3L	7309805	3L_7309805_SNP [dm3] 3L_7316705_SNP [dm6]	C	A	3.840e^-4	0.754	INTERGENIC
2R	9438052	2R_9438052_SNP [dm3] 2R_13550547_SNP [dm6]	A	T	3.841e^-4	0.754	UPSTREAM CG33156 INTRON CG33156	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3L	13070204	3L_13070204_SNP [dm3] 3L_13077104_SNP [dm6]	A	G	3.843e^-4	0.754	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	19429240	3L_19429240_SNP [dm3] 3L_19436140_SNP [dm6]	C	T	3.850e^-4	0.754	INTERGENIC
2L	3463115	2L_3463115_SNP [dm3] 2L_3463115_SNP [dm6]	A	C	3.851e^-4	0.754	UTR_3_PRIME msl-2 DOWNSTREAM mir-4971
3L	15759197	3L_15759197_SNP [dm3] 3L_15766097_SNP [dm6]	C	T	3.854e^-4	0.754	INTERGENIC
2L	10542872	2L_10542872_INS [dm3] 2L_10542872_INS [dm6]	T	TG	3.857e^-4	0.754	EXON CR44618	TF binding site mE1_TFBS_cad
3R	25252894	3R_25252894_SNP [dm3] 3R_29427172_SNP [dm6]	G	A	3.857e^-4	0.754	INTRON Ptp99A
3L	17048566	3L_17048566_SNP [dm3] 3L_17055466_SNP [dm6]	A	G	3.875e^-4	0.754	UPSTREAM CG7724 DOWNSTREAM rogdi INTERGENIC	TF binding site mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3R	7470573	3R_7470573_SNP [dm3] 3R_11644851_SNP [dm6]	C	T	3.877e^-4	0.754	INTRON Csk
2L	1389123	2L_1389123_SNP [dm3] 2L_1389123_SNP [dm6]	C	A	3.878e^-4	0.754	INTRON lea
3L	15508578	3L_15508578_SNP [dm3] 3L_15515478_SNP [dm6]	T	C	3.878e^-4	0.754	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	14880999	3R_14880999_SNP [dm3] 3R_19055277_SNP [dm6]	T	C	3.879e^-4	0.754	INTRON cdi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	20702836	3R_20702836_SNP [dm3] 3R_24877114_SNP [dm6]	T	G	3.882e^-4	0.754	UTR_5_PRIME CG11089 & 1 other UPSTREAM CG3744	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	1321824	2R_1321824_SNP [dm3] 2R_5434319_SNP [dm6]	G	A	3.887e^-4	0.754	INTRON laccase2
3L	41518	3L_41518_SNP [dm3] 3L_41518_SNP [dm6]	C	T	3.888e^-4	0.754	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3693389	2L_3693389_SNP [dm3] 2L_3693389_SNP [dm6]	C	T	3.893e^-4	0.754	UTR_3_PRIME Acp24A4 UPSTREAM CG16704 & 1 other DOWNSTREAM Acp24A4 & 1 other
3L	3443612	3L_3443612_SNP [dm3] 3L_3443612_SNP [dm6]	G	T	3.893e^-4	0.754	INTRON eIF5B
2L	10083785	2L_10083785_SNP [dm3] 2L_10083785_SNP [dm6]	A	T	3.898e^-4	0.754	INTRON CG44153
2L	13884923	2L_13884923_SNP [dm3] 2L_13884923_SNP [dm6]	A	G	3.900e^-4	0.754	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	16628627	3L_16628627_SNP [dm3] 3L_16635527_SNP [dm6]	C	G	3.903e^-4	0.754	INTRON Abl
3R	2016914	3R_2016914_SNP [dm3] 3R_6191192_SNP [dm6]	G	C	3.903e^-4	0.754	INTRON NPFR
X	17001589	X_17001589_DEL [dm3] X_17107556_DEL [dm6]	TT	T	3.909e^-4	0.754	UPSTREAM CG5004 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_zfh1
X	8096912	X_8096912_SNP [dm3] X_8202879_SNP [dm6]	A	T	3.910e^-4	0.754	INTRON sdt
3R	13574403	3R_13574403_SNP [dm3] 3R_17748681_SNP [dm6]	T	C	3.923e^-4	0.754	INTERGENIC
X	3794587	X_3794587_SNP [dm3] X_3900554_SNP [dm6]	A	G	3.940e^-4	0.754	INTRON CG42541
3R	24864992	3R_24864992_SNP [dm3] 3R_29039270_SNP [dm6]	G	C	3.941e^-4	0.754	START_GAINED Pkc98E UTR_5_PRIME Pkc98E UPSTREAM Pkc98E & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	6258711	3R_6258711_SNP [dm3] 3R_10432989_SNP [dm6]	G	A	3.945e^-4	0.754	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6218789	3R_6218789_SNP [dm3] 3R_10393067_SNP [dm6]	A	G	3.946e^-4	0.754	INTRON cwo
3R	7652907	3R_7652907_SNP [dm3] 3R_11827185_SNP [dm6]	A	C	3.950e^-4	0.754	INTRON CG6959
3R	14405455	3R_14405455_SNP [dm3] 3R_18579733_SNP [dm6]	A	G	3.951e^-4	0.754	INTRON fray & 1 other
3L	15293460	3L_15293460_SNP [dm3] 3L_15300360_SNP [dm6]	A	T	3.953e^-4	0.754	DOWNSTREAM Best3 INTRON Best4
3L	13070202	3L_13070202_SNP [dm3] 3L_13077102_SNP [dm6]	A	G	3.955e^-4	0.754	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	3793602	X_3793602_SNP [dm3] X_3899569_SNP [dm6]	A	G	3.960e^-4	0.754	INTRON CG42541
3L	16246035	3L_16246035_SNP [dm3] 3L_16252935_SNP [dm6]	G	A	3.967e^-4	0.754	UPSTREAM CG13055 INTERGENIC
3L	2330861	3L_2330861_SNP [dm3] 3L_2330861_SNP [dm6]	T	A	3.973e^-4	0.754	INTRON MsR1
2L	9665889	2L_9665889_SNP [dm3] 2L_9665889_SNP [dm6]	C	G	3.974e^-4	0.754	INTERGENIC
3L	2229080	3L_2229080_DEL [dm3] 3L_2229080_DEL [dm6]	GACTTAGCC	G	3.981e^-4	0.754	UPSTREAM Oseg2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	16722625	3R_16722625_SNP [dm3] 3R_20896903_SNP [dm6]	T	A	3.982e^-4	0.754	SYNONYMOUS_CODING CG10830	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24708930	3R_24708930_SNP [dm3] 3R_28883208_SNP [dm6]	A	G	3.990e^-4	0.754	UPSTREAM CG14526 DOWNSTREAM CG14527 INTRON CG33203
2L	12959576	2L_12959576_SNP [dm3] 2L_12959576_SNP [dm6]	A	G	3.991e^-4	0.754	INTERGENIC
2L	13876907	2L_13876907_INS [dm3] 2L_13876907_INS [dm6]	A	AGA	4.001e^-4	0.754	INTRON CenG1A	TF binding site BDTNP1_TFBS_prd mE1_TFBS_Trl
X	3794467	X_3794467_SNP [dm3] X_3900434_SNP [dm6]	C	G	4.006e^-4	0.754	INTRON CG42541
3L	9763094	3L_9763094_SNP [dm3] 3L_9769994_SNP [dm6]	A	C	4.009e^-4	0.754	UPSTREAM CG8177 INTRON CG8177
2R	16584481	2R_16584481_SNP [dm3] 2R_20696976_SNP [dm6]	C	G	4.013e^-4	0.754	INTERGENIC
2R	15468073	2R_15468073_SNP [dm3] 2R_19580568_SNP [dm6]	G	A	4.017e^-4	0.754	INTRON sm
2L	14003565	2L_14003565_SNP [dm3] 2L_14003565_SNP [dm6]	G	T	4.017e^-4	0.754	INTERGENIC
3L	19429275	3L_19429275_SNP [dm3] 3L_19436175_SNP [dm6]	T	A	4.020e^-4	0.754	INTERGENIC
2L	20293216	2L_20293216_DEL [dm3] 2L_20293216_DEL [dm6]	AC	A	4.032e^-4	0.754	INTERGENIC
X	3412746	X_3412746_INS [dm3] X_3518713_INS [dm6]	T	TCAGAT	4.038e^-4	0.754	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_twi
X	8827181	X_8827181_SNP [dm3] X_8933148_SNP [dm6]	C	T	4.046e^-4	0.754	INTRON rdgA

By genomic position
Variant impact
Gene name

LifespanBoricAcid phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results