DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.532e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1846 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	20607370	2L_20607370_SNP [dm3] 2L_20607370_SNP [dm6]	G	C	2.100e^-6	0.992	INTRON CR44909 EXON CR43608
3R	19698627	3R_19698627_SNP [dm3] 3R_23872905_SNP [dm6]	G	A	4.039e^-6	0.992	INTRON Pli	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	7962630	X_7962630_SNP [dm3] X_8068597_SNP [dm6]	G	T	4.416e^-6	0.992	SYNONYMOUS_CODING mys	TF binding site mE1_TFBS_cad
3R	25552406	3R_25552406_SNP [dm3] 3R_29726684_SNP [dm6]	C	T	6.872e^-6	0.992	DOWNSTREAM CG18731 INTRON Kul	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2159424	3L_2159424_SNP [dm3] 3L_2159424_SNP [dm6]	T	G	9.547e^-6	0.992	INTRON CG15822	TF binding site mE1_TFBS_inv
3L	1001420	3L_1001420_SNP [dm3] 3L_1001420_SNP [dm6]	T	C	1.024e^-5	0.992	UPSTREAM trio INTRON trio
3L	2159425	3L_2159425_SNP [dm3] 3L_2159425_SNP [dm6]	T	G	1.033e^-5	0.992	INTRON CG15822	TF binding site mE1_TFBS_inv
3L	14949786	3L_14949786_SNP [dm3] 3L_14956686_SNP [dm6]	C	T	1.168e^-5	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	20263558	3R_20263558_SNP [dm3] 3R_24437836_SNP [dm6]	G	A	1.297e^-5	0.992	INTRON nAChRalpha1
3L	4031107	3L_4031107_SNP [dm3] 3L_4031107_SNP [dm6]	G	A	1.297e^-5	0.992	SYNONYMOUS_CODING Gr64c UTR_3_PRIME Gr64b UPSTREAM Gr64d	TF binding site mE1_TFBS_cad
3L	2159095	3L_2159095_SNP [dm3] 3L_2159095_SNP [dm6]	C	T	1.367e^-5	0.992	INTRON CG15822	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12802098	2R_12802098_SNP [dm3] 2R_16914593_SNP [dm6]	C	A	1.388e^-5	0.992	INTERGENIC
3R	21622080	3R_21622080_SNP [dm3] 3R_25796358_SNP [dm6]	A	G	1.635e^-5	0.992	DOWNSTREAM CR43847 INTERGENIC
3L	20316941	3L_20316941_SNP [dm3] 3L_20323841_SNP [dm6]	T	G	1.648e^-5	0.992	UPSTREAM CG6434 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
3L	1548195	3L_1548195_SNP [dm3] 3L_1548195_SNP [dm6]	T	C	1.731e^-5	0.992	UPSTREAM Cct1 INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	4525088	3L_4525088_SNP [dm3] 3L_4525088_SNP [dm6]	A	T	1.848e^-5	0.992	INTRON Tie
3L	7685171	3L_7685171_SNP [dm3] 3L_7692071_SNP [dm6]	T	C	1.974e^-5	0.992	NON_SYNONYMOUS_CODING Ank2 INTRON CG32373 & 2 others
2R	14183565	2R_14183565_SNP [dm3] 2R_18296060_SNP [dm6]	T	A	2.081e^-5	0.992	DOWNSTREAM CG18536 INTRON sbb & 1 other
2R	6628508	2R_6628508_SNP [dm3] 2R_10741003_SNP [dm6]	T	G	2.093e^-5	0.992	SYNONYMOUS_CODING CG33144	TF binding site mE1_TFBS_cad
3L	4104033	3L_4104033_DEL [dm3] 3L_4104033_DEL [dm6]	AG	C	2.103e^-5	0.992	UTR_5_PRIME Fit1 UPSTREAM CG14995	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	25552992	3R_25552992_SNP [dm3] 3R_29727270_SNP [dm6]	T	C	2.152e^-5	0.992	INTRON Kul	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16304846	2R_16304846_SNP [dm3] 2R_20417341_SNP [dm6]	C	A	2.268e^-5	0.992	INTERGENIC
3R	20814502	3R_20814502_SNP [dm3] 3R_24988780_SNP [dm6]	T	A	2.272e^-5	0.992	INTRON tnc
3R	18820775	3R_18820775_SNP [dm3] 3R_22995053_SNP [dm6]	G	A	2.367e^-5	0.992	INTRON Nha2
2L	10913634	2L_10913634_INS [dm3] 2L_10913634_INS [dm6]	A	AA	2.406e^-5	0.992	INTERGENIC
X	21458367	X_21458367_SNP [dm3] X_21587340_SNP [dm6]	A	C	2.500e^-5	0.992	INTERGENIC
3L	20317010	3L_20317010_SNP [dm3] 3L_20323910_SNP [dm6]	G	A	2.711e^-5	0.992	UPSTREAM CG6434 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
2L	9269104	2L_9269104_SNP [dm3] 2L_9269104_SNP [dm6]	A	G	2.735e^-5	0.992	INTRON Ggamma30A
3L	20064140	3L_20064140_SNP [dm3] 3L_20071040_SNP [dm6]	G	T	2.777e^-5	0.992	INTRON sNPF-R
X	12348925	X_12348925_SNP [dm3] X_12454892_SNP [dm6]	T	A	2.939e^-5	0.992	SYNONYMOUS_CODING CG15927 UPSTREAM CR45615
3L	6332693	3L_6332693_SNP [dm3] 3L_6339593_SNP [dm6]	T	C	2.947e^-5	0.992	INTRON CG13300	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12810635	X_12810635_INS [dm3] X_12916602_INS [dm6]	A	AA	2.995e^-5	0.992	UPSTREAM fne DOWNSTREAM CR45626 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14564583	3R_14564583_SNP [dm3] 3R_18738861_SNP [dm6]	A	G	3.067e^-5	0.992	INTRON Mekk1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	20064134	3L_20064134_DEL [dm3] 3L_20071034_DEL [dm6]	CTGC	C	3.171e^-5	0.992	INTRON sNPF-R
3R	23287845	3R_23287845_SNP [dm3] 3R_27462123_SNP [dm6]	C	T	3.238e^-5	0.992	INTERGENIC
2R	9649844	2R_9649844_SNP [dm3] 2R_13762339_SNP [dm6]	T	A	3.313e^-5	0.992	INTERGENIC
3L	20218754	3L_20218754_SNP [dm3] 3L_20225654_SNP [dm6]	G	A	3.343e^-5	0.992	UPSTREAM Su_var_3-3 DOWNSTREAM CG17147 INTERGENIC
3L	1327638	3L_1327638_SNP [dm3] 3L_1327638_SNP [dm6]	C	T	3.403e^-5	0.992	SYNONYMOUS_CODING Myo61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	6613771	X_6613771_SNP [dm3] X_6719738_SNP [dm6]	A	C	3.423e^-5	0.992	DOWNSTREAM CG3168 & 1 other INTERGENIC
2R	7669151	2R_7669151_SNP [dm3] 2R_11781646_SNP [dm6]	C	A	3.468e^-5	0.992	INTRON ths
2R	7670448	2R_7670448_SNP [dm3] 2R_11782943_SNP [dm6]	G	T	3.498e^-5	0.992	INTRON ths
2R	18446145	2R_18446145_SNP [dm3] 2R_22558640_SNP [dm6]	A	T	3.520e^-5	0.992	INTRON px
2L	20611764	2L_20611764_SNP [dm3] 2L_20611764_SNP [dm6]	A	G	3.526e^-5	0.992	INTRON CR44909
3L	12585949	3L_12585949_SNP [dm3] 3L_12592849_SNP [dm6]	A	T	3.571e^-5	0.992	INTRON ara	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10996779	3L_10996779_SNP [dm3] 3L_11003679_SNP [dm6]	G	A	3.615e^-5	0.992	INTRON klu
3L	12585988	3L_12585988_SNP [dm3] 3L_12592888_SNP [dm6]	G	A	3.647e^-5	0.992	INTRON ara	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20311663	3L_20311663_SNP [dm3] 3L_20318563_SNP [dm6]	A	G	3.649e^-5	0.992	NON_SYNONYMOUS_CODING Spn77Ba
3R	16791779	3R_16791779_SNP [dm3] 3R_20966057_SNP [dm6]	T	A	3.693e^-5	0.992	INTRON Atpalpha	TF binding site mE1_TFBS_cad
2R	12802016	2R_12802016_SNP [dm3] 2R_16914511_SNP [dm6]	T	G	3.729e^-5	0.992	INTERGENIC
2R	12802014	2R_12802014_SNP [dm3] 2R_16914509_SNP [dm6]	G	A	3.736e^-5	0.992	INTERGENIC
2R	12801955	2R_12801955_SNP [dm3] 2R_16914450_SNP [dm6]	A	G	3.748e^-5	0.992	INTERGENIC
3R	10600664	3R_10600664_SNP [dm3] 3R_14774942_SNP [dm6]	C	A	4.076e^-5	0.992	INTRON jvl
3R	25552585	3R_25552585_SNP [dm3] 3R_29726863_SNP [dm6]	A	C	4.082e^-5	0.992	SPLICE_SITE_REGION Kul UTR_5_PRIME Kul	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_Trl
2L	6044378	2L_6044378_SNP [dm3] 2L_6044378_SNP [dm6]	A	G	4.102e^-5	0.992	INTRON ade2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	1548193	3L_1548193_SNP [dm3] 3L_1548193_SNP [dm6]	T	C	4.197e^-5	0.992	UPSTREAM Cct1 INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2R	16384423	2R_16384423_SNP [dm3] 2R_20496918_SNP [dm6]	C	T	4.269e^-5	0.992	INTERGENIC
3L	6332590	3L_6332590_SNP [dm3] 3L_6339490_SNP [dm6]	A	G	4.310e^-5	0.992	INTRON CG13300	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	21458420	X_21458420_SNP [dm3] X_21587393_SNP [dm6]	C	A	4.313e^-5	0.992	INTERGENIC
2L	1719740	2L_1719740_DEL [dm3] 2L_1719740_DEL [dm6]	TT	C	4.353e^-5	0.992	INTRON Rim2
3L	12585951	3L_12585951_SNP [dm3] 3L_12592851_SNP [dm6]	A	C	4.535e^-5	0.992	INTRON ara	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16844901	2R_16844901_SNP [dm3] 2R_20957396_SNP [dm6]	C	T	4.621e^-5	0.992	INTRON hbn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	12555299	2L_12555299_SNP [dm3] 2L_12555299_SNP [dm6]	A	G	4.724e^-5	0.992	INTERGENIC
X	11906926	X_11906926_SNP [dm3] X_12012893_SNP [dm6]	T	C	4.742e^-5	0.992	UPSTREAM CG1492 INTRON regucalcin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25551868	3R_25551868_SNP [dm3] 3R_29726146_SNP [dm6]	G	T	4.766e^-5	0.992	DOWNSTREAM CG18731 INTRON Kul	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	233626	3L_233626_SNP [dm3] 3L_233626_SNP [dm6]	T	C	4.770e^-5	0.992	UPSTREAM CG34453 DOWNSTREAM E_bx_ INTERGENIC
3L	20064139	3L_20064139_SNP [dm3] 3L_20071039_SNP [dm6]	G	T	4.882e^-5	0.992	INTRON sNPF-R
3L	20239550	3L_20239550_SNP [dm3] 3L_20246450_SNP [dm6]	C	G	4.989e^-5	0.992	INTERGENIC
X	2149022	X_2149022_SNP [dm3] X_2254989_SNP [dm6]	T	A	5.013e^-5	0.992	UTR_3_PRIME CG3078 UPSTREAM CG3091	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13187247	3L_13187247_SNP [dm3] 3L_13194147_SNP [dm6]	T	A	5.016e^-5	0.992	INTERGENIC
2R	12802339	2R_12802339_SNP [dm3] 2R_16914834_SNP [dm6]	G	A	5.063e^-5	0.992	INTERGENIC
3L	233632	3L_233632_SNP [dm3] 3L_233632_SNP [dm6]	A	G	5.116e^-5	0.992	UPSTREAM CG34453 DOWNSTREAM E_bx_ INTERGENIC
3R	11689682	3R_11689682_SNP [dm3] 3R_15863960_SNP [dm6]	G	C	5.204e^-5	0.992	INTRON CG31183
2L	22195807	2L_22195807_SNP [dm3] 2L_22195807_SNP [dm6]	G	A	5.333e^-5	0.992	INTRON Ir40a	transposable element FlyBase
3R	14103071	3R_14103071_SNP [dm3] 3R_18277349_SNP [dm6]	A	T	5.412e^-5	0.992	DOWNSTREAM CG7142 INTRON eIF-1A
2R	7423388	2R_7423388_SNP [dm3] 2R_11535883_SNP [dm6]	A	G	5.549e^-5	0.992	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	6331664	3L_6331664_SNP [dm3] 3L_6338564_SNP [dm6]	A	T	5.570e^-5	0.992	INTRON CG13300	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24611976	3R_24611976_SNP [dm3] 3R_28786254_SNP [dm6]	G	T	5.588e^-5	0.992	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2092687	2R_2092687_SNP [dm3] 2R_6205182_SNP [dm6]	A	T	5.629e^-5	0.992	UTR_3_PRIME CG30431
2L	1600560	2L_1600560_SNP [dm3] 2L_1600560_SNP [dm6]	T	C	5.659e^-5	0.992	INTRON haf & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18988350	3R_18988350_DEL [dm3] 3R_23162628_DEL [dm6]	TTGACAAATGGGT...	T	5.729e^-5	0.992	INTERGENIC
3R	25552571	3R_25552571_SNP [dm3] 3R_29726849_SNP [dm6]	C	T	5.744e^-5	0.992	UTR_5_PRIME Kul INTRON Kul	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_sens mE1_TFBS_Trl
3L	20385625	3L_20385625_SNP [dm3] 3L_20392525_SNP [dm6]	G	C	5.747e^-5	0.992	DOWNSTREAM fbl INTRON CG33969
3R	1321144	3R_1321144_SNP [dm3] 3R_5495422_SNP [dm6]	G	C	5.755e^-5	0.992	INTRON CG31547
3L	8358155	3L_8358155_SNP [dm3] 3L_8365055_SNP [dm6]	T	A	5.808e^-5	0.992	INTERGENIC
3L	14949842	3L_14949842_SNP [dm3] 3L_14956742_SNP [dm6]	T	C	5.922e^-5	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	883662	3L_883662_SNP [dm3] 3L_883662_SNP [dm6]	G	A	5.938e^-5	0.992	INTRON CG32479	TF binding site mE1_TFBS_Trl
3L	883667	3L_883667_SNP [dm3] 3L_883667_SNP [dm6]	T	G	5.938e^-5	0.992	INTRON CG32479	TF binding site mE1_TFBS_Trl
3R	7374676	3R_7374676_SNP [dm3] 3R_11548954_SNP [dm6]	C	G	6.008e^-5	0.992	INTERGENIC
3L	6755927	3L_6755927_SNP [dm3] 3L_6762827_SNP [dm6]	C	T	6.159e^-5	0.992	INTRON CG32392
3L	1327794	3L_1327794_SNP [dm3] 3L_1327794_SNP [dm6]	C	G	6.240e^-5	0.992	SYNONYMOUS_CODING Myo61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9268998	2L_9268998_DEL [dm3] 2L_9268998_DEL [dm6]	TC	T	6.268e^-5	0.992	INTRON Ggamma30A
2L	9270076	2L_9270076_SNP [dm3] 2L_9270076_SNP [dm6]	A	G	6.268e^-5	0.992	INTRON Ggamma30A
3L	10360032	3L_10360032_SNP [dm3] 3L_10366932_SNP [dm6]	T	A	6.359e^-5	0.992	EXON CR44327
2R	6443462	2R_6443462_SNP [dm3] 2R_10555957_SNP [dm6]	T	C	6.398e^-5	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8196690	3L_8196690_DEL [dm3] 3L_8203590_DEL [dm6]	CGTCAAAGAAA...	G	6.417e^-5	0.992	DOWNSTREAM CG13679 INTERGENIC
X	4492088	X_4492088_SNP [dm3] X_4598055_SNP [dm6]	C	T	6.644e^-5	0.992	INTRON CR32773
2R	19659418	2R_19659418_DEL [dm3] 2R_23771895_DEL [dm6]	GACAGAAAGT	G	6.663e^-5	0.992	INTRON CG9850
2R	16387781	2R_16387781_SNP [dm3] 2R_20500276_SNP [dm6]	A	G	6.677e^-5	0.992	INTERGENIC
3L	12834914	3L_12834914_SNP [dm3] 3L_12841814_SNP [dm6]	G	A	6.722e^-5	0.992	INTRON CG10960	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	14564712	3R_14564712_SNP [dm3] 3R_18738990_SNP [dm6]	A	T	6.765e^-5	0.992	INTRON Mekk1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19481483	2R_19481483_SNP [dm3] 2R_23593960_SNP [dm6]	A	G	6.869e^-5	0.992	INTRON apt	TF binding site mE1_TFBS_HSA
3L	3977233	3L_3977233_SNP [dm3] 3L_3977233_SNP [dm6]	A	T	7.074e^-5	0.992	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10996705	3L_10996705_SNP [dm3] 3L_11003605_SNP [dm6]	G	A	7.118e^-5	0.992	INTRON klu
2R	13644877	2R_13644877_SNP [dm3] 2R_17757372_SNP [dm6]	G	A	7.212e^-5	0.992	UPSTREAM HLH54F & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12800755	2R_12800755_SNP [dm3] 2R_16913250_SNP [dm6]	C	G	7.280e^-5	0.992	INTERGENIC
3R	16572626	3R_16572626_SNP [dm3] 3R_20746904_SNP [dm6]	G	A	7.346e^-5	0.992	SYNONYMOUS_CODING CG42322	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19387494	3R_19387494_SNP [dm3] 3R_23561772_SNP [dm6]	G	A	7.372e^-5	0.992	INTRON beat-IV	TF binding site mE1_TFBS_inv
3L	20213897	3L_20213897_SNP [dm3] 3L_20220797_SNP [dm6]	A	G	7.389e^-5	0.992	UPSTREAM CG6933 INTERGENIC
3L	16788420	3L_16788420_SNP [dm3] 3L_16795320_SNP [dm6]	G	C	7.412e^-5	0.992	SYNONYMOUS_CODING CG9674	TF binding site mE1_TFBS_cad
2R	16578957	2R_16578957_SNP [dm3] 2R_20691452_SNP [dm6]	A	C	7.473e^-5	0.992	UPSTREAM CR44659 INTERGENIC
3L	4031083	3L_4031083_SNP [dm3] 3L_4031083_SNP [dm6]	G	A	7.519e^-5	0.992	SYNONYMOUS_CODING Gr64c UTR_3_PRIME Gr64b UPSTREAM Gr64d	TF binding site mE1_TFBS_cad
3L	18372981	3L_18372981_SNP [dm3] 3L_18379881_SNP [dm6]	T	A	7.652e^-5	0.992	INTERGENIC
3R	22191194	3R_22191194_SNP [dm3] 3R_26365472_SNP [dm6]	C	T	7.741e^-5	0.992	INTERGENIC
2R	15974300	2R_15974300_SNP [dm3] 2R_20086795_SNP [dm6]	T	G	7.771e^-5	0.992	DOWNSTREAM CR44632 INTERGENIC
3L	14572036	3L_14572036_SNP [dm3] 3L_14578936_SNP [dm6]	C	A	7.944e^-5	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	21204018	X_21204018_INS [dm3] X_21332991_INS [dm6]	T	TT	8.063e^-5	0.992	UTR_3_PRIME tty INTRON tty	TF binding site mE1_TFBS_cad
X	7915716	X_7915716_SNP [dm3] X_8021683_SNP [dm6]	T	C	8.080e^-5	0.992	UPSTREAM CG15333 INTRON Tbh
X	6613810	X_6613810_SNP [dm3] X_6719777_SNP [dm6]	C	A	8.180e^-5	0.992	DOWNSTREAM CG3168 & 1 other INTERGENIC
2R	15044159	2R_15044159_SNP [dm3] 2R_19156654_SNP [dm6]	G	C	8.196e^-5	0.992	INTRON ena
3R	24611952	3R_24611952_SNP [dm3] 3R_28786230_SNP [dm6]	T	C	8.211e^-5	0.992	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4106074	X_4106074_SNP [dm3] X_4212041_SNP [dm6]	C	T	8.244e^-5	0.992	UPSTREAM CG43288 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1547676	3L_1547676_SNP [dm3] 3L_1547676_SNP [dm6]	T	G	8.331e^-5	0.992	UPSTREAM Cct1 INTRON Cct1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	25554678	3R_25554678_SNP [dm3] 3R_29728956_SNP [dm6]	T	G	8.381e^-5	0.992	SYNONYMOUS_CODING Kul	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	17383007	2R_17383007_SNP [dm3] 2R_21495502_SNP [dm6]	C	T	8.460e^-5	0.992	UTR_5_PRIME Fkbp14 INTRON Fkbp14	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14572024	3L_14572024_SNP [dm3] 3L_14578924_SNP [dm6]	C	A	8.476e^-5	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	27390817	3R_27390817_SNP [dm3] 3R_31565095_SNP [dm6]	C	A	8.494e^-5	0.992	INTRON nyo
3R	6374480	3R_6374480_SNP [dm3] 3R_10548758_SNP [dm6]	C	T	8.509e^-5	0.992	INTRON hth
3R	6326901	3R_6326901_SNP [dm3] 3R_10501179_SNP [dm6]	C	T	8.578e^-5	0.992	INTERGENIC
2L	1600565	2L_1600565_SNP [dm3] 2L_1600565_SNP [dm6]	G	A	8.627e^-5	0.992	INTRON haf & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14271975	3L_14271975_SNP [dm3] 3L_14278875_SNP [dm6]	A	G	8.673e^-5	0.992	INTRON fz	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10631750	2R_10631750_SNP [dm3] 2R_14744245_SNP [dm6]	A	T	8.784e^-5	0.992	INTRON CG12858	TF binding site mE1_TFBS_cad
X	16385193	X_16385193_SNP [dm3] X_16491160_SNP [dm6]	T	C	8.885e^-5	0.992	INTRON para
3L	15591977	3L_15591977_SNP [dm3] 3L_15598877_SNP [dm6]	A	T	8.916e^-5	0.992	INTRON RhoGAP71E
3L	15591980	3L_15591980_SNP [dm3] 3L_15598880_SNP [dm6]	G	A	8.916e^-5	0.992	INTRON RhoGAP71E
2L	12994852	2L_12994852_SNP [dm3] 2L_12994852_SNP [dm6]	A	T	8.968e^-5	0.992	INTRON CG12404
2L	12994854	2L_12994854_SNP [dm3] 2L_12994854_SNP [dm6]	G	C	8.968e^-5	0.992	INTRON CG12404
2L	1597085	2L_1597085_SNP [dm3] 2L_1597085_SNP [dm6]	T	C	9.064e^-5	0.992	INTRON haf & 1 other	TF binding site mE1_TFBS_chinmo
2R	18800004	2R_18800004_SNP [dm3] 2R_22912481_SNP [dm6]	G	C	9.141e^-5	0.992	SYNONYMOUS_CODING nahoda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	13232353	X_13232353_SNP [dm3] X_13338320_SNP [dm6]	G	T	9.167e^-5	0.992	START_GAINED CG15747 UTR_5_PRIME CG15747 UPSTREAM RpS15Aa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16821524	2R_16821524_SNP [dm3] 2R_20934019_SNP [dm6]	A	G	9.366e^-5	0.992	INTRON Rx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6903580	X_6903580_SNP [dm3] X_7009547_SNP [dm6]	G	A	9.404e^-5	0.992	SYNONYMOUS_CODING cm UTR_5_PRIME Inx7
2R	16847594	2R_16847594_SNP [dm3] 2R_20960089_SNP [dm6]	G	A	9.476e^-5	0.992	INTRON hbn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	18968088	3R_18968088_SNP [dm3] 3R_23142366_SNP [dm6]	G	A	9.489e^-5	0.992	UPSTREAM hh INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	10887762	2R_10887762_SNP [dm3] 2R_15000257_SNP [dm6]	A	G	9.522e^-5	0.992	INTERGENIC
2R	16847149	2R_16847149_SNP [dm3] 2R_20959644_SNP [dm6]	T	C	9.536e^-5	0.992	INTRON hbn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15501860	X_15501860_SNP [dm3] X_15607827_SNP [dm6]	G	A	9.588e^-5	0.992	INTRON sog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26086443	3R_26086443_SNP [dm3] 3R_30260721_SNP [dm6]	T	C	9.589e^-5	0.992	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	6019482	3R_6019482_SNP [dm3] 3R_10193760_SNP [dm6]	T	C	9.603e^-5	0.992	INTRON Syn
3R	9792857	3R_9792857_SNP [dm3] 3R_13967135_SNP [dm6]	G	C	9.635e^-5	0.992	UTR_3_PRIME rdx DOWNSTREAM rdx & 1 other	TF binding site BDTNP1_TFBS_z
2L	5649681	2L_5649681_SNP [dm3] 2L_5649681_SNP [dm6]	A	G	9.737e^-5	0.992	INTRON CG31646
2R	17382524	2R_17382524_SNP [dm3] 2R_21495019_SNP [dm6]	C	G	9.785e^-5	0.992	INTRON Fkbp14
2R	17382573	2R_17382573_SNP [dm3] 2R_21495068_SNP [dm6]	T	A	9.821e^-5	0.992	INTRON Fkbp14
3R	25552523	3R_25552523_SNP [dm3] 3R_29726801_SNP [dm6]	C	A	9.884e^-5	0.992	INTRON Kul	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14230050	2L_14230050_SNP [dm3] 2L_14230050_SNP [dm6]	T	A	9.902e^-5	0.992	INTRON Dyrk2
2L	14230026	2L_14230026_SNP [dm3] 2L_14230026_SNP [dm6]	T	G	9.938e^-5	0.992	INTRON Dyrk2
2L	10091359	2L_10091359_SNP [dm3] 2L_10091359_SNP [dm6]	T	G	9.948e^-5	0.992	UTR_3_PRIME CG13133 INTRON CG44153
2R	6443450	2R_6443450_SNP [dm3] 2R_10555945_SNP [dm6]	C	T	9.973e^-5	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14871463	3L_14871463_SNP [dm3] 3L_14878363_SNP [dm6]	C	A	9.976e^-5	0.992	SYNONYMOUS_CODING CG17839	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	20607952	2L_20607952_SNP [dm3] 2L_20607952_SNP [dm6]	T	C	9.987e^-5	0.992	UPSTREAM CR43608 INTRON CR44909
2L	20607993	2L_20607993_SNP [dm3] 2L_20607993_SNP [dm6]	A	T	9.987e^-5	0.992	UPSTREAM CR43608 INTRON CR44909
2L	12189450	2L_12189450_SNP [dm3] 2L_12189450_SNP [dm6]	G	C	1.007e^-4	0.992	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1599867	2L_1599867_SNP [dm3] 2L_1599867_SNP [dm6]	C	A	1.009e^-4	0.992	INTRON haf & 1 other
2R	9820645	2R_9820645_SNP [dm3] 2R_13933140_SNP [dm6]	A	C	1.012e^-4	0.992	INTRON shot	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	20609715	2L_20609715_SNP [dm3] 2L_20609715_SNP [dm6]	C	A	1.012e^-4	0.992	INTRON CR44909
2L	17966319	2L_17966319_SNP [dm3] 2L_17966319_SNP [dm6]	C	T	1.015e^-4	0.992	SYNONYMOUS_CODING btv INTRON CG5674	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7865952	X_7865952_SNP [dm3] X_7971919_SNP [dm6]	T	C	1.020e^-4	0.992	INTRON sn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5629529	2L_5629529_SNP [dm3] 2L_5629529_SNP [dm6]	C	A	1.024e^-4	0.992	INTRON CG31646	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	6766668	3R_6766668_SNP [dm3] 3R_10940946_SNP [dm6]	T	G	1.026e^-4	0.992	INTERGENIC
3R	25552536	3R_25552536_SNP [dm3] 3R_29726814_SNP [dm6]	G	A	1.028e^-4	0.992	SPLICE_SITE_ACCEPTOR Kul INTRON Kul	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14564331	3R_14564331_SNP [dm3] 3R_18738609_SNP [dm6]	A	C	1.028e^-4	0.992	INTRON Mekk1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	9921865	3R_9921865_SNP [dm3] 3R_14096143_SNP [dm6]	G	A	1.042e^-4	0.992	INTRON CCHa1
X	13036863	X_13036863_INS [dm3] X_13142830_INS [dm6]	A	AA	1.043e^-4	0.992	INTRON CG32645
X	7865558	X_7865558_SNP [dm3] X_7971525_SNP [dm6]	T	A	1.052e^-4	0.992	INTRON sn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
X	21329497	X_21329497_DEL [dm3] X_21458470_DEL [dm6]	GAAGCAAG	G	1.056e^-4	0.992	UPSTREAM CG42343 INTERGENIC
3L	9734135	3L_9734135_SNP [dm3] 3L_9741035_SNP [dm6]	T	A	1.058e^-4	0.992	UPSTREAM CR44348 INTRON CG42268
3L	2268043	3L_2268043_SNP [dm3] 3L_2268043_SNP [dm6]	C	T	1.066e^-4	0.992	SYNONYMOUS_CODING obst-I UPSTREAM CG32302 DOWNSTREAM CG13806
3L	1327878	3L_1327878_SNP [dm3] 3L_1327878_SNP [dm6]	C	T	1.071e^-4	0.992	SYNONYMOUS_CODING Myo61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7367701	3R_7367701_SNP [dm3] 3R_11541979_SNP [dm6]	A	T	1.071e^-4	0.992	INTRON dpr4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	9826640	3L_9826640_SNP [dm3] 3L_9833540_SNP [dm6]	G	A	1.072e^-4	0.992	UTR_3_PRIME CG43897 DOWNSTREAM I-2
3L	20361016	3L_20361016_SNP [dm3] 3L_20367916_SNP [dm6]	A	C	1.075e^-4	0.992	NON_SYNONYMOUS_CODING in	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14501727	2L_14501727_SNP [dm3] 2L_14501727_SNP [dm6]	T	A	1.076e^-4	0.992	INTERGENIC
X	7854963	X_7854963_SNP [dm3] X_7960930_SNP [dm6]	T	A	1.092e^-4	0.992	DOWNSTREAM CR45620 INTRON sws	TF binding site BDTNP1_TFBS_dl
X	12810652	X_12810652_SNP [dm3] X_12916619_SNP [dm6]	C	T	1.092e^-4	0.992	UPSTREAM fne DOWNSTREAM CR45626 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16394121	2R_16394121_SNP [dm3] 2R_20506616_SNP [dm6]	A	G	1.094e^-4	0.992	UPSTREAM CR44644 DOWNSTREAM Obp57a EXON CR44645
3L	6621455	3L_6621455_SNP [dm3] 3L_6628355_SNP [dm6]	T	A	1.096e^-4	0.992	INTRON GluRIA
2L	12023069	2L_12023069_SNP [dm3] 2L_12023069_SNP [dm6]	T	G	1.098e^-4	0.992	DOWNSTREAM CR44587 INTERGENIC
3L	1047076	3L_1047076_SNP [dm3] 3L_1047076_SNP [dm6]	A	T	1.103e^-4	0.992	INTRON bab1
3L	20385499	3L_20385499_SNP [dm3] 3L_20392399_SNP [dm6]	A	G	1.122e^-4	0.992	SYNONYMOUS_CODING CG33969 DOWNSTREAM fbl
2R	15044165	2R_15044165_SNP [dm3] 2R_19156660_SNP [dm6]	A	T	1.147e^-4	0.992	INTRON ena
3R	2860496	3R_2860496_SNP [dm3] 3R_7034774_SNP [dm6]	C	T	1.147e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5863615	2R_5863615_SNP [dm3] 2R_9976110_SNP [dm6]	A	G	1.160e^-4	0.992	DOWNSTREAM CR43948 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19682653	2R_19682653_SNP [dm3] 2R_23795130_SNP [dm6]	C	T	1.163e^-4	0.992	INTRON CG9850
2R	16847387	2R_16847387_SNP [dm3] 2R_20959882_SNP [dm6]	T	C	1.177e^-4	0.992	INTRON hbn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7854951	X_7854951_SNP [dm3] X_7960918_SNP [dm6]	A	G	1.178e^-4	0.992	DOWNSTREAM CR45620 INTRON sws	TF binding site BDTNP1_TFBS_dl
2L	10913696	2L_10913696_SNP [dm3] 2L_10913696_SNP [dm6]	G	A	1.188e^-4	0.992	INTERGENIC
3L	20276285	3L_20276285_SNP [dm3] 3L_20283185_SNP [dm6]	A	G	1.201e^-4	0.992	INTRON gogo
2R	20255265	2R_20255265_SNP [dm3] 2R_24367742_SNP [dm6]	C	A	1.212e^-4	0.992	INTRON bs & 1 other	TF binding site mE1_TFBS_inv
3L	6755921	3L_6755921_DEL [dm3] 3L_6762821_DEL [dm6]	ATTTT	A	1.235e^-4	0.992	INTRON CG32392
3R	23287882	3R_23287882_SNP [dm3] 3R_27462160_SNP [dm6]	A	T	1.238e^-4	0.992	INTERGENIC
3L	8312945	3L_8312945_SNP [dm3] 3L_8319845_SNP [dm6]	A	C	1.240e^-4	0.992	UPSTREAM CG43059 & 1 other INTERGENIC
3L	2159371	3L_2159371_SNP [dm3] 3L_2159371_SNP [dm6]	T	C	1.251e^-4	0.992	INTRON CG15822	TF binding site mE1_TFBS_inv
2R	9649824	2R_9649824_SNP [dm3] 2R_13762319_SNP [dm6]	G	A	1.253e^-4	0.992	INTERGENIC
3R	23942758	3R_23942758_SNP [dm3] 3R_28117036_SNP [dm6]	C	A	1.257e^-4	0.992	INTERGENIC
3R	7353205	3R_7353205_SNP [dm3] 3R_11527483_SNP [dm6]	C	T	1.261e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	17373833	3L_17373833_SNP [dm3] 3L_17380733_SNP [dm6]	C	G	1.271e^-4	0.992	NON_SYNONYMOUS_CODING CG13728	TF binding site BDTNP1_TFBS_da
3R	7375413	3R_7375413_SNP [dm3] 3R_11549691_SNP [dm6]	T	A	1.277e^-4	0.992	INTERGENIC
2L	10913691	2L_10913691_SNP [dm3] 2L_10913691_SNP [dm6]	A	G	1.278e^-4	0.992	INTERGENIC
3L	20311922	3L_20311922_SNP [dm3] 3L_20318822_SNP [dm6]	A	T	1.279e^-4	0.992	INTRON Spn77Ba	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8351432	3R_8351432_SNP [dm3] 3R_12525710_SNP [dm6]	A	G	1.280e^-4	0.992	UPSTREAM Hug INTRON Octbeta3R
3L	15347076	3L_15347076_SNP [dm3] 3L_15353976_SNP [dm6]	A	G	1.285e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2268142	3L_2268142_SNP [dm3] 3L_2268142_SNP [dm6]	T	C	1.285e^-4	0.992	SYNONYMOUS_CODING obst-I UPSTREAM CG32302 DOWNSTREAM CG13806
2L	9268940	2L_9268940_SNP [dm3] 2L_9268940_SNP [dm6]	T	C	1.287e^-4	0.992	INTRON Ggamma30A
3L	6755931	3L_6755931_SNP [dm3] 3L_6762831_SNP [dm6]	A	G	1.289e^-4	0.992	INTRON CG32392
3L	607832	3L_607832_SNP [dm3] 3L_607832_SNP [dm6]	T	C	1.291e^-4	0.992	INTERGENIC
2L	4117417	2L_4117417_SNP [dm3] 2L_4117417_SNP [dm6]	A	T	1.294e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_cad
3L	2377246	3L_2377246_SNP [dm3] 3L_2377246_SNP [dm6]	A	C	1.298e^-4	0.992	UPSTREAM CG45186 DOWNSTREAM CG9004 INTRON CG15877	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19451829	2R_19451829_SNP [dm3] 2R_23564306_SNP [dm6]	T	C	1.307e^-4	0.992	SYNONYMOUS_CODING CG30184 UPSTREAM apt DOWNSTREAM Pi3K59F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15974340	2R_15974340_SNP [dm3] 2R_20086835_SNP [dm6]	T	G	1.310e^-4	0.992	DOWNSTREAM CR44632 INTERGENIC
3L	19171192	3L_19171192_SNP [dm3] 3L_19178092_SNP [dm6]	G	C	1.312e^-4	0.992	INTRON fz2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	10077934	2L_10077934_SNP [dm3] 2L_10077934_SNP [dm6]	A	G	1.313e^-4	0.992	INTRON CG44153
2L	12477275	2L_12477275_SNP [dm3] 2L_12477275_SNP [dm6]	G	C	1.340e^-4	0.992	INTRON bun
3R	25553357	3R_25553357_SNP [dm3] 3R_29727635_SNP [dm6]	A	G	1.348e^-4	0.992	INTRON Kul	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16394126	2R_16394126_SNP [dm3] 2R_20506621_SNP [dm6]	A	C	1.350e^-4	0.992	UPSTREAM CR44644 DOWNSTREAM Obp57a EXON CR44645
2L	20602495	2L_20602495_SNP [dm3] 2L_20602495_SNP [dm6]	A	C	1.358e^-4	0.992	INTRON CR44909
2R	5863613	2R_5863613_SNP [dm3] 2R_9976108_SNP [dm6]	T	C	1.363e^-4	0.992	DOWNSTREAM CR43948 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	20284495	3L_20284495_SNP [dm3] 3L_20291395_SNP [dm6]	T	C	1.363e^-4	0.992	UPSTREAM CR43890 INTRON gogo
2R	9797399	2R_9797399_SNP [dm3] 2R_13909894_SNP [dm6]	G	T	1.364e^-4	0.992	INTRON shot
3L	20239331	3L_20239331_SNP [dm3] 3L_20246231_SNP [dm6]	C	G	1.369e^-4	0.992	DOWNSTREAM CG6951 INTERGENIC
3R	18533414	3R_18533414_SNP [dm3] 3R_22707692_SNP [dm6]	G	T	1.371e^-4	0.992	UPSTREAM CG13842 DOWNSTREAM CG4907 INTERGENIC
2L	10077040	2L_10077040_SNP [dm3] 2L_10077040_SNP [dm6]	G	A	1.373e^-4	0.992	INTRON CG44153	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	15591942	3L_15591942_SNP [dm3] 3L_15598842_SNP [dm6]	G	T	1.374e^-4	0.992	INTRON RhoGAP71E
2R	19745925	2R_19745925_SNP [dm3] 2R_23858402_SNP [dm6]	T	G	1.381e^-4	0.992	NON_SYNONYMOUS_CODING bgcn DOWNSTREAM TBPH	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5700327	3L_5700327_DEL [dm3] 3L_5707227_DEL [dm6]	CC	C	1.382e^-4	0.992	INTRON sif
2R	16144985	2R_16144985_SNP [dm3] 2R_20257480_SNP [dm6]	T	C	1.390e^-4	0.992	UPSTREAM Hsl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	1194861	3L_1194861_SNP [dm3] 3L_1194861_SNP [dm6]	C	A	1.394e^-4	0.992	UTR_3_PRIME LysX
3R	10598802	3R_10598802_SNP [dm3] 3R_14773080_SNP [dm6]	T	A	1.409e^-4	0.992	INTRON jvl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11907152	X_11907152_SNP [dm3] X_12013119_SNP [dm6]	C	A	1.410e^-4	0.992	UPSTREAM CG1492 INTRON regucalcin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19837335	3R_19837335_SNP [dm3] 3R_24011613_SNP [dm6]	A	G	1.422e^-4	0.992	INTRON KrT95D	TF binding site BDTNP1_TFBS_twi
3R	26849927	3R_26849927_SNP [dm3] 3R_31024205_SNP [dm6]	A	T	1.428e^-4	0.992	INTERGENIC
3R	19837336	3R_19837336_SNP [dm3] 3R_24011614_SNP [dm6]	A	G	1.432e^-4	0.992	INTRON KrT95D	TF binding site BDTNP1_TFBS_twi
3L	20256603	3L_20256603_SNP [dm3] 3L_20263503_SNP [dm6]	A	G	1.438e^-4	0.992	SYNONYMOUS_CODING rdgC	TF binding site mE1_TFBS_inv
2L	4937106	2L_4937106_SNP [dm3] 2L_4937106_SNP [dm6]	A	T	1.439e^-4	0.992	UPSTREAM Sgs1 & 1 other INTERGENIC
3R	26413453	3R_26413453_SNP [dm3] 3R_30587731_SNP [dm6]	C	A	1.439e^-4	0.992	UPSTREAM CG9717 INTERGENIC
3L	20017133	3L_20017133_SNP [dm3] 3L_20024033_SNP [dm6]	T	C	1.444e^-4	0.992	DOWNSTREAM CG14183 INTRON kug
2R	19660984	2R_19660984_SNP [dm3] 2R_23773461_SNP [dm6]	G	C	1.445e^-4	0.992	INTRON CG9850
3L	2268295	3L_2268295_SNP [dm3] 3L_2268295_SNP [dm6]	A	C	1.446e^-4	0.992	SYNONYMOUS_CODING obst-I UPSTREAM CG32302 DOWNSTREAM CG13806
3R	3015802	3R_3015802_SNP [dm3] 3R_7190080_SNP [dm6]	T	G	1.451e^-4	0.992	INTRON lap
3L	13647035	3L_13647035_SNP [dm3] 3L_13653935_SNP [dm6]	T	C	1.464e^-4	0.992	INTRON bru-3
X	4223747	X_4223747_INS [dm3] X_4329714_INS [dm6]	C	CC	1.464e^-4	0.992	UPSTREAM CG12693 INTRON norpA
2L	17894445	2L_17894445_INS [dm3] 2L_17894445_INS [dm6]	A	AA	1.469e^-4	0.992	EXON CR43420
3L	11150089	3L_11150089_SNP [dm3] 3L_11156989_SNP [dm6]	A	G	1.469e^-4	0.992	INTRON CG32082	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16847924	2R_16847924_SNP [dm3] 2R_20960419_SNP [dm6]	A	T	1.471e^-4	0.992	INTRON hbn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	24618242	3R_24618242_SNP [dm3] 3R_28792520_SNP [dm6]	G	C	1.472e^-4	0.992	INTERGENIC
3R	18818785	3R_18818785_SNP [dm3] 3R_22993063_SNP [dm6]	G	T	1.495e^-4	0.992	INTRON Nha2
2L	12963897	2L_12963897_SNP [dm3] 2L_12963897_SNP [dm6]	A	G	1.495e^-4	0.992	INTERGENIC
3L	10996891	3L_10996891_SNP [dm3] 3L_11003791_SNP [dm6]	A	G	1.503e^-4	0.992	INTRON klu
3R	10604014	3R_10604014_SNP [dm3] 3R_14778292_SNP [dm6]	A	T	1.504e^-4	0.992	INTRON jvl
2R	11737554	2R_11737554_SNP [dm3] 2R_15850049_SNP [dm6]	T	C	1.512e^-4	0.992	INTRON tun
2R	16391183	2R_16391183_SNP [dm3] 2R_20503678_SNP [dm6]	A	T	1.527e^-4	0.992	SYNONYMOUS_CODING Obp57c UPSTREAM Obp57b	regulatory region REDfly_CRMs
3R	19498254	3R_19498254_SNP [dm3] 3R_23672532_SNP [dm6]	C	T	1.529e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17475452	2R_17475452_SNP [dm3] 2R_21587947_SNP [dm6]	C	T	1.533e^-4	0.992	INTERGENIC
X	7530689	X_7530689_SNP [dm3] X_7636656_SNP [dm6]	A	T	1.536e^-4	0.992	INTRON ct	TF binding site mE1_TFBS_Trl
3R	6019445	3R_6019445_DEL [dm3] 3R_10193723_DEL [dm6]	TTTGTTGG	T	1.536e^-4	0.992	INTRON Syn
3L	18851487	3L_18851487_SNP [dm3] 3L_18858387_SNP [dm6]	A	T	1.541e^-4	0.992	DOWNSTREAM CR45388 INTERGENIC
2R	15974260	2R_15974260_SNP [dm3] 2R_20086755_SNP [dm6]	A	C	1.546e^-4	0.992	DOWNSTREAM CR44632 INTERGENIC
2R	16852208	2R_16852208_SNP [dm3] 2R_20964703_SNP [dm6]	C	T	1.555e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16825582	2R_16825582_SNP [dm3] 2R_20938077_SNP [dm6]	A	G	1.557e^-4	0.992	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	12586248	3L_12586248_SNP [dm3] 3L_12593148_SNP [dm6]	A	C	1.558e^-4	0.992	INTRON ara	TF binding site mE1_TFBS_HSA
3L	13647042	3L_13647042_SNP [dm3] 3L_13653942_SNP [dm6]	C	T	1.559e^-4	0.992	INTRON bru-3
2L	5388081	2L_5388081_SNP [dm3] 2L_5388081_SNP [dm6]	T	C	1.565e^-4	0.992	EXON CR44745	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23187116	3R_23187116_SNP [dm3] 3R_27361394_SNP [dm6]	T	C	1.574e^-4	0.992	INTRON CG42534	TF binding site mE1_TFBS_chinmo
3R	14564704	3R_14564704_SNP [dm3] 3R_18738982_SNP [dm6]	C	A	1.577e^-4	0.992	INTRON Mekk1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	16126795	2R_16126795_SNP [dm3] 2R_20239290_SNP [dm6]	C	G	1.583e^-4	0.992	NON_SYNONYMOUS_CODING CG13869 UPSTREAM Efhc1.2 DOWNSTREAM CG11099
3R	9623801	3R_9623801_SNP [dm3] 3R_13798079_SNP [dm6]	A	G	1.588e^-4	0.992	DOWNSTREAM tRNA:CR31331 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27391499	3R_27391499_SNP [dm3] 3R_31565777_SNP [dm6]	G	T	1.606e^-4	0.992	UTR_3_PRIME nyo	TF binding site BDTNP1_TFBS_twi
3R	19837377	3R_19837377_SNP [dm3] 3R_24011655_SNP [dm6]	A	G	1.608e^-4	0.992	INTRON KrT95D	TF binding site BDTNP1_TFBS_twi
3R	25459289	3R_25459289_SNP [dm3] 3R_29633567_SNP [dm6]	T	C	1.612e^-4	0.992	INTRON Dop1R2
2R	15974341	2R_15974341_SNP [dm3] 2R_20086836_SNP [dm6]	G	T	1.613e^-4	0.992	DOWNSTREAM CR44632 INTERGENIC
2R	16847721	2R_16847721_SNP [dm3] 2R_20960216_SNP [dm6]	T	A	1.631e^-4	0.992	INTRON hbn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18818542	3R_18818542_SNP [dm3] 3R_22992820_SNP [dm6]	T	A	1.643e^-4	0.992	INTRON Nha2
2R	7221721	2R_7221721_SNP [dm3] 2R_11334216_SNP [dm6]	T	C	1.651e^-4	0.992	SYNONYMOUS_CODING sha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14951365	3L_14951365_SNP [dm3] 3L_14958265_SNP [dm6]	A	G	1.655e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	7774232	X_7774232_SNP [dm3] X_7880199_SNP [dm6]	G	A	1.667e^-4	0.992	SYNONYMOUS_CODING Ir7e	TF binding site mE1_TFBS_HSA
3L	6368265	3L_6368265_SNP [dm3] 3L_6375165_SNP [dm6]	G	A	1.676e^-4	0.992	INTERGENIC
3L	20276414	3L_20276414_SNP [dm3] 3L_20283314_SNP [dm6]	C	T	1.697e^-4	0.992	INTRON gogo
2L	19676584	2L_19676584_SNP [dm3] 2L_19676584_SNP [dm6]	T	A	1.712e^-4	0.992	INTRON Lar
3R	25554681	3R_25554681_SNP [dm3] 3R_29728959_SNP [dm6]	G	C	1.716e^-4	0.992	SYNONYMOUS_CODING Kul	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	16934656	X_16934656_SNP [dm3] X_17040623_SNP [dm6]	T	C	1.717e^-4	0.992	INTRON CG45002
2L	19910400	2L_19910400_SNP [dm3] 2L_19910400_SNP [dm6]	A	C	1.733e^-4	0.992	SYNONYMOUS_CODING sick DOWNSTREAM CR43097
3R	26849922	3R_26849922_SNP [dm3] 3R_31024200_SNP [dm6]	G	T	1.735e^-4	0.992	INTERGENIC
3L	16817503	3L_16817503_SNP [dm3] 3L_16824403_SNP [dm6]	G	A	1.744e^-4	0.992	INTRON CG13024
3L	4345390	3L_4345390_SNP [dm3] 3L_4345390_SNP [dm6]	G	T	1.752e^-4	0.992	UPSTREAM CR45156 INTRON Cip4
2L	1602117	2L_1602117_SNP [dm3] 2L_1602117_SNP [dm6]	G	C	1.753e^-4	0.992	INTRON CG31935 & 1 other
3L	20218972	3L_20218972_SNP [dm3] 3L_20225872_SNP [dm6]	A	G	1.767e^-4	0.992	UPSTREAM Su_var_3-3 DOWNSTREAM CG17147 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	2148993	X_2148993_DEL [dm3] X_2254960_DEL [dm6]	CTC	C	1.774e^-4	0.992	UTR_3_PRIME CG3078 UPSTREAM CG3091	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4116422	2L_4116422_SNP [dm3] 2L_4116422_SNP [dm6]	G	C	1.777e^-4	0.992	DOWNSTREAM ed INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	17789157	2R_17789157_SNP [dm3] 2R_21901652_SNP [dm6]	C	A	1.784e^-4	0.992	INTRON Fili	TF binding site BDTNP1_TFBS_twi
2R	18794090	2R_18794090_SNP [dm3] 2R_22906567_SNP [dm6]	A	G	1.787e^-4	0.992	INTRON nahoda
2L	16461271	2L_16461271_SNP [dm3] 2L_16461271_SNP [dm6]	T	C	1.788e^-4	0.992	INTERGENIC	regulatory region REDfly_CRMs
3L	14947173	3L_14947173_SNP [dm3] 3L_14954073_SNP [dm6]	A	C	1.789e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19913446	2L_19913446_SNP [dm3] 2L_19913446_SNP [dm6]	C	G	1.794e^-4	0.992	INTRON sick & 1 other
2R	2114938	2R_2114938_SNP [dm3] 2R_6227433_SNP [dm6]	T	G	1.794e^-4	0.992	DOWNSTREAM tomboy40 INTRON bin3
3L	6332509	3L_6332509_SNP [dm3] 3L_6339409_SNP [dm6]	T	A	1.802e^-4	0.992	INTRON CG13300	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8195576	3L_8195576_SNP [dm3] 3L_8202476_SNP [dm6]	G	T	1.802e^-4	0.992	UPSTREAM CG13679 & 1 other INTERGENIC
3R	9912515	3R_9912515_INS [dm3] 3R_14086793_INS [dm6]	A	AG	1.807e^-4	0.992	INTRON foxo
3R	18820891	3R_18820891_SNP [dm3] 3R_22995169_SNP [dm6]	A	G	1.813e^-4	0.992	INTRON Nha2
3R	20264243	3R_20264243_SNP [dm3] 3R_24438521_SNP [dm6]	A	C	1.824e^-4	0.992	INTRON nAChRalpha1
3R	1328577	3R_1328577_SNP [dm3] 3R_5502855_SNP [dm6]	C	T	1.826e^-4	0.992	UPSTREAM CG31547 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	818586	3L_818586_SNP [dm3] 3L_818586_SNP [dm6]	T	C	1.827e^-4	0.992	INTERGENIC
2R	16384264	2R_16384264_SNP [dm3] 2R_20496759_SNP [dm6]	A	C	1.828e^-4	0.992	INTERGENIC
3R	10595243	3R_10595243_SNP [dm3] 3R_14769521_SNP [dm6]	A	G	1.832e^-4	0.992	INTRON jvl
3L	1544057	3L_1544057_SNP [dm3] 3L_1544057_SNP [dm6]	C	T	1.843e^-4	0.992	SYNONYMOUS_CODING CG7852 UTR_3_PRIME CG7852 DOWNSTREAM CG32313	TF binding site mE1_TFBS_sens
3R	14564708	3R_14564708_SNP [dm3] 3R_18738986_SNP [dm6]	C	A	1.859e^-4	0.992	INTRON Mekk1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	12460216	2R_12460216_INS [dm3] 2R_16572711_INS [dm6]	A	AA	1.872e^-4	0.992	INTRON CG4927
3L	3498519	3L_3498519_SNP [dm3] 3L_3498519_SNP [dm6]	G	A	1.882e^-4	0.992	INTRON CG42324
3L	20244407	3L_20244407_SNP [dm3] 3L_20251307_SNP [dm6]	C	G	1.882e^-4	0.992	INTRON rdgC
3L	6755913	3L_6755913_SNP [dm3] 3L_6762813_SNP [dm6]	A	C	1.883e^-4	0.992	INTRON CG32392
3L	14084563	3L_14084563_SNP [dm3] 3L_14091463_SNP [dm6]	T	A	1.897e^-4	0.992	INTERGENIC
X	2150800	X_2150800_SNP [dm3] X_2256767_SNP [dm6]	T	G	1.898e^-4	0.992	SYNONYMOUS_CODING CG3078	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	2171799	3L_2171799_SNP [dm3] 3L_2171799_SNP [dm6]	G	A	1.900e^-4	0.992	UPSTREAM CG5704 EXON CR15821
2L	5840044	2L_5840044_SNP [dm3] 2L_5840044_SNP [dm6]	C	G	1.918e^-4	0.992	INTRON TrissinR
3L	2158851	3L_2158851_SNP [dm3] 3L_2158851_SNP [dm6]	G	A	1.919e^-4	0.992	SYNONYMOUS_CODING CG15822	TF binding site mE1_TFBS_inv
2R	18438344	2R_18438344_SNP [dm3] 2R_22550839_SNP [dm6]	G	A	1.922e^-4	0.992	SYNONYMOUS_CODING CG6018 INTRON px	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	12189360	2L_12189360_SNP [dm3] 2L_12189360_SNP [dm6]	T	G	1.928e^-4	0.992	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3397084	2L_3397084_SNP [dm3] 2L_3397084_SNP [dm6]	G	A	1.934e^-4	0.992	UPSTREAM CG34175 DOWNSTREAM CR44792 INTERGENIC
X	16421213	X_16421213_SNP [dm3] X_16527180_SNP [dm6]	T	C	1.935e^-4	0.992	INTRON para	TF binding site BDTNP1_TFBS_dl
X	10252582	X_10252582_SNP [dm3] X_10358549_SNP [dm6]	C	G	1.938e^-4	0.992	INTRON l_1_G0289	TF binding site mE1_TFBS_sens
2R	20138094	2R_20138094_SNP [dm3] 2R_24250571_SNP [dm6]	T	G	1.942e^-4	0.992	NON_SYNONYMOUS_CODING Ir60a UPSTREAM snoRNA:Me18S-A1597 INTRON nord	TF binding site mE1_TFBS_chinmo
3L	14718470	3L_14718470_DEL [dm3] 3L_14725370_DEL [dm6]	AC	A	1.946e^-4	0.992	INTRON ome
2R	17906086	2R_17906086_SNP [dm3] 2R_22018581_SNP [dm6]	G	A	1.949e^-4	0.992	INTRON CG34370
3R	15215976	3R_15215976_SNP [dm3] 3R_19390254_SNP [dm6]	A	G	1.955e^-4	0.992	UPSTREAM CG18493 DOWNSTREAM CG3734 INTRON Ino80
X	4106022	X_4106022_SNP [dm3] X_4211989_SNP [dm6]	C	T	1.967e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20305501	3L_20305501_SNP [dm3] 3L_20312401_SNP [dm6]	G	T	1.977e^-4	0.992	SYNONYMOUS_CODING polo	TF binding site mE1_TFBS_sens
2L	13035988	2L_13035988_SNP [dm3] 2L_13035988_SNP [dm6]	C	A	1.985e^-4	0.992	INTRON CG9932	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	10506336	3L_10506336_SNP [dm3] 3L_10513236_SNP [dm6]	T	G	1.989e^-4	0.992	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
3R	25376168	3R_25376168_SNP [dm3] 3R_29550446_SNP [dm6]	G	C	1.992e^-4	0.992	INTERGENIC
X	6535860	X_6535860_SNP [dm3] X_6641827_SNP [dm6]	T	A	1.997e^-4	0.992	INTRON pigs
3L	2909529	3L_2909529_SNP [dm3] 3L_2909529_SNP [dm6]	C	T	1.998e^-4	0.992	INTRON Shab
X	21320208	X_21320208_SNP [dm3] X_21449181_SNP [dm6]	T	C	1.998e^-4	0.992	INTRON CG42343
3L	6353859	3L_6353859_SNP [dm3] 3L_6360759_SNP [dm6]	G	T	1.999e^-4	0.992	INTERGENIC
3R	3595068	3R_3595068_SNP [dm3] 3R_7769346_SNP [dm6]	T	C	2.002e^-4	0.992	INTERGENIC
3R	25559694	3R_25559694_INS [dm3] 3R_29733972_INS [dm6]	A	AA	2.006e^-4	0.992	UTR_3_PRIME Kul
3L	10081814	3L_10081814_SNP [dm3] 3L_10088714_SNP [dm6]	A	G	2.009e^-4	0.992	INTRON dpr6 & 1 other
X	15359389	X_15359389_SNP [dm3] X_15465356_SNP [dm6]	T	G	2.019e^-4	0.992	UTR_5_PRIME CG6299 UPSTREAM CG6299 DOWNSTREAM CG6294 & 1 other INTRON CG6299 & 1 other
3R	25826916	3R_25826916_SNP [dm3] 3R_30001194_SNP [dm6]	T	C	2.024e^-4	0.992	SYNONYMOUS_CODING Tace DOWNSTREAM CG34298	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	608672	3L_608672_SNP [dm3] 3L_608672_SNP [dm6]	G	A	2.044e^-4	0.992	DOWNSTREAM CR44513 INTERGENIC
2L	20545580	2L_20545580_SNP [dm3] 2L_20545580_SNP [dm6]	A	G	2.055e^-4	0.992	INTERGENIC
3R	25826937	3R_25826937_SNP [dm3] 3R_30001215_SNP [dm6]	A	G	2.055e^-4	0.992	SYNONYMOUS_CODING Tace DOWNSTREAM CG34298	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15974254	2R_15974254_SNP [dm3] 2R_20086749_SNP [dm6]	A	G	2.057e^-4	0.992	DOWNSTREAM CR44632 INTERGENIC
3L	13647083	3L_13647083_SNP [dm3] 3L_13653983_SNP [dm6]	C	T	2.064e^-4	0.992	INTRON bru-3
2R	7670437	2R_7670437_SNP [dm3] 2R_11782932_SNP [dm6]	A	G	2.064e^-4	0.992	INTRON ths
2R	13550280	2R_13550280_DEL [dm3] 2R_17662775_DEL [dm6]	TATAAATGGTT...	T	2.065e^-4	0.992	INTRON CCHa1-R
3R	23287913	3R_23287913_SNP [dm3] 3R_27462191_SNP [dm6]	C	T	2.066e^-4	0.992	INTERGENIC
3L	16817571	3L_16817571_SNP [dm3] 3L_16824471_SNP [dm6]	T	A	2.067e^-4	0.992	INTRON CG13024
3L	6293927	3L_6293927_SNP [dm3] 3L_6300827_SNP [dm6]	A	T	2.097e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	10600652	3R_10600652_SNP [dm3] 3R_14774930_SNP [dm6]	A	C	2.115e^-4	0.992	INTRON jvl
2R	16385645	2R_16385645_INS [dm3] 2R_20498140_INS [dm6]	G	GCCCCGCACG	2.118e^-4	0.992	INTERGENIC
2L	3398063	2L_3398063_SNP [dm3] 2L_3398063_SNP [dm6]	A	G	2.121e^-4	0.992	UTR_5_PRIME CG34175 UPSTREAM CR44792
3L	9339586	3L_9339586_SNP [dm3] 3L_9346486_SNP [dm6]	A	G	2.128e^-4	0.992	DOWNSTREAM PGRP-LC INTRON PGRP-LC
2R	7039999	2R_7039999_SNP [dm3] 2R_11152494_SNP [dm6]	T	G	2.129e^-4	0.992	INTRON CG13229
2R	17090889	2R_17090889_DEL [dm3] 2R_21203384_DEL [dm6]	AT	A	2.133e^-4	0.992	UTR_5_PRIME Glycogenin INTRON Glycogenin & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2R	12802154	2R_12802154_SNP [dm3] 2R_16914649_SNP [dm6]	C	A	2.134e^-4	0.992	INTERGENIC
3L	2159381	3L_2159381_SNP [dm3] 3L_2159381_SNP [dm6]	T	G	2.146e^-4	0.992	INTRON CG15822	TF binding site mE1_TFBS_inv
3R	26086315	3R_26086315_SNP [dm3] 3R_30260593_SNP [dm6]	C	T	2.152e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	17803789	2L_17803789_SNP [dm3] 2L_17803789_SNP [dm6]	C	T	2.169e^-4	0.992	INTRON CadN2
X	9769637	X_9769637_SNP [dm3] X_9875604_SNP [dm6]	A	C	2.172e^-4	0.992	SYNONYMOUS_CODING CG15247	TF binding site mE1_TFBS_chinmo
X	15904067	X_15904067_SNP [dm3] X_16010034_SNP [dm6]	C	T	2.173e^-4	0.992	INTRON Muc14A	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
X	20965949	X_20965949_SNP [dm3] X_21094922_SNP [dm6]	C	T	2.175e^-4	0.992	DOWNSTREAM CG15446 INTRON stg1 & 1 other
3L	6363240	3L_6363240_SNP [dm3] 3L_6370140_SNP [dm6]	A	T	2.178e^-4	0.992	EXON CR45419
X	15501852	X_15501852_SNP [dm3] X_15607819_SNP [dm6]	T	A	2.182e^-4	0.992	INTRON sog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13647084	3L_13647084_SNP [dm3] 3L_13653984_SNP [dm6]	T	A	2.186e^-4	0.992	INTRON bru-3
2L	5650095	2L_5650095_SNP [dm3] 2L_5650095_SNP [dm6]	A	G	2.196e^-4	0.992	INTRON CG31646
2L	6164337	2L_6164337_SNP [dm3] 2L_6164337_SNP [dm6]	A	G	2.203e^-4	0.992	INTERGENIC
X	5764391	X_5764391_SNP [dm3] X_5870358_SNP [dm6]	C	G	2.203e^-4	0.992	DOWNSTREAM GAA1 & 1 other INTERGENIC
3L	20211733	3L_20211733_SNP [dm3] 3L_20218633_SNP [dm6]	A	T	2.205e^-4	0.992	NON_SYNONYMOUS_CODING CG6933	TF binding site mE1_TFBS_cad
3R	10221554	3R_10221554_SNP [dm3] 3R_14395832_SNP [dm6]	A	G	2.207e^-4	0.992	DOWNSTREAM mir-2281 INTRON cv-c	TF binding site mE1_TFBS_cad
3L	17426743	3L_17426743_SNP [dm3] 3L_17433643_SNP [dm6]	T	C	2.213e^-4	0.992	UPSTREAM CG32176 & 2 others DOWNSTREAM CG12229 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10076798	3L_10076798_SNP [dm3] 3L_10083698_SNP [dm6]	G	A	2.219e^-4	0.992	INTRON dpr6
2L	20674860	2L_20674860_SNP [dm3] 2L_20674860_SNP [dm6]	T	G	2.220e^-4	0.992	INTRON CG31678
3R	26540241	3R_26540241_SNP [dm3] 3R_30714519_SNP [dm6]	G	A	2.222e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25574897	3R_25574897_SNP [dm3] 3R_29749175_SNP [dm6]	T	C	2.225e^-4	0.992	UPSTREAM yata & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	14105327	3R_14105327_DEL [dm3] 3R_18279605_DEL [dm6]	AGA	A	2.228e^-4	0.992	UPSTREAM CG7142 INTRON eIF-1A
3R	24624146	3R_24624146_SNP [dm3] 3R_28798424_SNP [dm6]	A	C	2.229e^-4	0.992	INTERGENIC
X	13442811	X_13442811_SNP [dm3] X_13548778_SNP [dm6]	C	A	2.231e^-4	0.992	INTERGENIC
2R	16824413	2R_16824413_SNP [dm3] 2R_20936908_SNP [dm6]	T	A	2.235e^-4	0.992	UTR_3_PRIME Rx
X	7965753	X_7965753_SNP [dm3] X_8071720_SNP [dm6]	G	A	2.237e^-4	0.992	SYNONYMOUS_CODING Upf2
2L	18973853	2L_18973853_DEL [dm3] 2L_18973853_DEL [dm6]	AG	A	2.248e^-4	0.992	UPSTREAM CG10431 INTRON CG10639	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20373198	3L_20373198_SNP [dm3] 3L_20380098_SNP [dm6]	C	T	2.250e^-4	0.992	NON_SYNONYMOUS_CODING RhoBTB	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	4105992	X_4105992_SNP [dm3] X_4211959_SNP [dm6]	A	T	2.252e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21634196	2L_21634196_SNP [dm3] 2L_21634196_SNP [dm6]	G	C	2.259e^-4	0.992	INTRON Ac3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10697063	3L_10697063_SNP [dm3] 3L_10703963_SNP [dm6]	G	T	2.267e^-4	0.992	INTERGENIC
2R	16304866	2R_16304866_SNP [dm3] 2R_20417361_SNP [dm6]	G	A	2.285e^-4	0.992	INTERGENIC
3R	16064333	3R_16064333_SNP [dm3] 3R_20238611_SNP [dm6]	C	T	2.285e^-4	0.992	INTRON Nlg4
3L	223563	3L_223563_INS [dm3] 3L_223563_INS [dm6]	C	CG	2.294e^-4	0.992	UPSTREAM CG33229 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	2825107	3R_2825107_SNP [dm3] 3R_6999385_SNP [dm6]	C	A	2.300e^-4	0.992	UPSTREAM Antp INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	14003421	2L_14003421_SNP [dm3] 2L_14003421_SNP [dm6]	C	T	2.304e^-4	0.992	INTERGENIC
2L	838188	2L_838188_SNP [dm3] 2L_838188_SNP [dm6]	T	G	2.314e^-4	0.992	INTRON drongo	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17864150	3R_17864150_SNP [dm3] 3R_22038428_SNP [dm6]	A	G	2.317e^-4	0.992	UTR_3_PRIME pit DOWNSTREAM pit
3L	17609645	3L_17609645_SNP [dm3] 3L_17616545_SNP [dm6]	A	G	2.320e^-4	0.992	INTRON Eip74EF
2R	19660591	2R_19660591_SNP [dm3] 2R_23773068_SNP [dm6]	T	C	2.322e^-4	0.992	INTRON CG9850
3R	25783364	3R_25783364_SNP [dm3] 3R_29957642_SNP [dm6]	T	A	2.336e^-4	0.992	INTRON TkR99D
3R	10600659	3R_10600659_SNP [dm3] 3R_14774937_SNP [dm6]	T	A	2.349e^-4	0.992	INTRON jvl
2R	12262721	2R_12262721_SNP [dm3] 2R_16375216_SNP [dm6]	G	A	2.355e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12859594	2R_12859594_INS [dm3] 2R_16972089_INS [dm6]	T	TT	2.356e^-4	0.992	DOWNSTREAM CR44377 INTERGENIC
2L	16298805	2L_16298805_SNP [dm3] 2L_16298805_SNP [dm6]	G	A	2.361e^-4	0.992	INTRON heix	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8641212	3L_8641212_SNP [dm3] 3L_8648112_SNP [dm6]	A	G	2.365e^-4	0.992	SYNONYMOUS_CODING Arr2 INTRON Pex7	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6382250	3L_6382250_SNP [dm3] 3L_6389150_SNP [dm6]	G	A	2.372e^-4	0.992	INTERGENIC
2L	19399204	2L_19399204_SNP [dm3] 2L_19399204_SNP [dm6]	C	A	2.373e^-4	0.992	UPSTREAM CG17544 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	4023193	2R_4023193_SNP [dm3] 2R_8135688_SNP [dm6]	T	C	2.377e^-4	0.992	UPSTREAM Obp44a INTERGENIC
3L	20404780	3L_20404780_SNP [dm3] 3L_20411680_SNP [dm6]	T	A	2.380e^-4	0.992	INTERGENIC
3R	20374027	3R_20374027_SNP [dm3] 3R_24548305_SNP [dm6]	C	T	2.383e^-4	0.992	UPSTREAM Esyt2 INTRON Esyt2	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	8068070	3L_8068070_SNP [dm3] 3L_8074970_SNP [dm6]	T	C	2.395e^-4	0.992	INTRON Ect4
2R	16825441	2R_16825441_SNP [dm3] 2R_20937936_SNP [dm6]	G	A	2.395e^-4	0.992	DOWNSTREAM Rx INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	15359663	X_15359663_SNP [dm3] X_15465630_SNP [dm6]	G	A	2.399e^-4	0.992	UTR_5_PRIME CG6299 UPSTREAM CG6299 DOWNSTREAM CG6294 & 1 other INTRON CG6299 & 1 other	TF binding site mE1_TFBS_chinmo
3L	3108591	3L_3108591_SNP [dm3] 3L_3108591_SNP [dm6]	C	T	2.408e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_sens
3L	14894533	3L_14894533_DEL [dm3] 3L_14901433_DEL [dm6]	GCCGCG	G	2.410e^-4	0.992	INTERGENIC
3R	23543561	3R_23543561_SNP [dm3] 3R_27717839_SNP [dm6]	T	G	2.413e^-4	0.992	INTERGENIC
3L	4616426	3L_4616426_SNP [dm3] 3L_4616426_SNP [dm6]	C	T	2.415e^-4	0.992	INTRON Src64B
2R	15791468	2R_15791468_SNP [dm3] 2R_19903963_SNP [dm6]	A	C	2.422e^-4	0.992	INTERGENIC
2R	16824791	2R_16824791_SNP [dm3] 2R_20937286_SNP [dm6]	A	T	2.433e^-4	0.992	DOWNSTREAM Rx INTERGENIC
3L	20363332	3L_20363332_SNP [dm3] 3L_20370232_SNP [dm6]	A	T	2.433e^-4	0.992	UTR_3_PRIME in UPSTREAM CG13247
2L	18646164	2L_18646164_SNP [dm3] 2L_18646164_SNP [dm6]	G	A	2.438e^-4	0.992	INTRON MESR3
3L	19808739	3L_19808739_DEL [dm3] 3L_19815639_DEL [dm6]	TG	T	2.439e^-4	0.992	DOWNSTREAM Fibp INTRON cyc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18793430	3R_18793430_SNP [dm3] 3R_22967708_SNP [dm6]	A	C	2.443e^-4	0.992	UTR_3_PRIME Tpl94D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	21326659	X_21326659_SNP [dm3] X_21455632_SNP [dm6]	A	C	2.444e^-4	0.992	INTRON CG42343
3R	1239081	3R_1239081_SNP [dm3] 3R_5413359_SNP [dm6]	G	T	2.455e^-4	0.992	UPSTREAM Orco INTERGENIC
2L	17444741	2L_17444741_SNP [dm3] 2L_17444741_SNP [dm6]	T	C	2.458e^-4	0.992	INTRON dl
X	18503475	X_18503475_SNP [dm3] X_18609442_SNP [dm6]	G	C	2.469e^-4	0.992	NON_SYNONYMOUS_CODING CG15040	TF binding site mE1_TFBS_chinmo
3L	9830579	3L_9830579_SNP [dm3] 3L_9837479_SNP [dm6]	C	T	2.470e^-4	0.992	SYNONYMOUS_CODING Cdk8 UPSTREAM I-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4631297	3L_4631297_SNP [dm3] 3L_4631297_SNP [dm6]	A	C	2.473e^-4	0.992	INTRON axo
3L	3462186	3L_3462186_SNP [dm3] 3L_3462186_SNP [dm6]	G	A	2.482e^-4	0.992	UTR_5_PRIME armi UPSTREAM armi
2R	19981414	2R_19981414_SNP [dm3] 2R_24093891_SNP [dm6]	G	A	2.486e^-4	0.992	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad
X	11906927	X_11906927_SNP [dm3] X_12012894_SNP [dm6]	G	A	2.489e^-4	0.992	UPSTREAM CG1492 INTRON regucalcin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2150794	X_2150794_SNP [dm3] X_2256761_SNP [dm6]	T	G	2.493e^-4	0.992	SYNONYMOUS_CODING CG3078	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	2268061	3L_2268061_SNP [dm3] 3L_2268061_SNP [dm6]	A	G	2.502e^-4	0.992	SYNONYMOUS_CODING obst-I UPSTREAM CG32302 DOWNSTREAM CG13806
3L	6755916	3L_6755916_DEL [dm3] 3L_6762816_DEL [dm6]	AT	A	2.505e^-4	0.992	INTRON CG32392
3R	25821908	3R_25821908_SNP [dm3] 3R_29996186_SNP [dm6]	T	A	2.505e^-4	0.992	NON_SYNONYMOUS_CODING Sas-6 UPSTREAM CG7903 DOWNSTREAM CG15525	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20140103	2L_20140103_SNP [dm3] 2L_20140103_SNP [dm6]	C	T	2.508e^-4	0.992	INTERGENIC
2L	3417323	2L_3417323_SNP [dm3] 2L_3417323_SNP [dm6]	A	C	2.524e^-4	0.992	SYNONYMOUS_CODING CG31952 INTRON pgant2
3R	5129777	3R_5129777_SNP [dm3] 3R_9304055_SNP [dm6]	A	C	2.532e^-4	0.992	INTRON CG8861
3L	13745742	3L_13745742_SNP [dm3] 3L_13752642_SNP [dm6]	C	G	2.532e^-4	0.992	INTRON bru-3
3L	17615087	3L_17615087_SNP [dm3] 3L_17621987_SNP [dm6]	C	A	2.537e^-4	0.992	UTR_5_PRIME CG7510 UPSTREAM CG6259	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	20429950	3L_20429950_SNP [dm3] 3L_20436850_SNP [dm6]	T	C	2.538e^-4	0.992	NON_SYNONYMOUS_CODING CG5872 UPSTREAM mRpL15	TF binding site mE1_TFBS_sens
3L	9951698	3L_9951698_SNP [dm3] 3L_9958598_SNP [dm6]	C	T	2.557e^-4	0.992	INTRON CG34356
3L	2163115	3L_2163115_SNP [dm3] 3L_2163115_SNP [dm6]	C	A	2.559e^-4	0.992	INTRON CG15822
X	7530886	X_7530886_SNP [dm3] X_7636853_SNP [dm6]	C	A	2.560e^-4	0.992	INTRON ct
3R	23319443	3R_23319443_SNP [dm3] 3R_27493721_SNP [dm6]	C	T	2.561e^-4	0.992	INTERGENIC
2R	15791482	2R_15791482_SNP [dm3] 2R_19903977_SNP [dm6]	G	T	2.578e^-4	0.992	INTERGENIC
3R	10814262	3R_10814262_SNP [dm3] 3R_14988540_SNP [dm6]	A	G	2.582e^-4	0.992	INTERGENIC
X	4279291	X_4279291_SNP [dm3] X_4385258_SNP [dm6]	T	G	2.593e^-4	0.992	INTERGENIC	regulatory region REDfly_CRMs
3L	2163270	3L_2163270_SNP [dm3] 3L_2163270_SNP [dm6]	C	G	2.598e^-4	0.992	INTRON CG15822
3R	17646499	3R_17646499_INS [dm3] 3R_21820777_INS [dm6]	T	TG	2.600e^-4	0.992	UTR_5_PRIME CASK
2R	16384108	2R_16384108_SNP [dm3] 2R_20496603_SNP [dm6]	T	C	2.607e^-4	0.992	INTERGENIC
3L	13858945	3L_13858945_SNP [dm3] 3L_13865845_SNP [dm6]	T	A	2.609e^-4	0.992	INTRON CG8745
2R	11301821	2R_11301821_SNP [dm3] 2R_15414316_SNP [dm6]	A	G	2.620e^-4	0.992	INTRON CG43729
2R	19416354	2R_19416354_SNP [dm3] 2R_23528831_SNP [dm6]	G	A	2.630e^-4	0.992	NON_SYNONYMOUS_CODING bw DOWNSTREAM mi
3L	20271423	3L_20271423_SNP [dm3] 3L_20278323_SNP [dm6]	C	G	2.631e^-4	0.992	SYNONYMOUS_CODING gogo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16146123	2R_16146123_SNP [dm3] 2R_20258618_SNP [dm6]	C	T	2.634e^-4	0.992	SYNONYMOUS_CODING Hsl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8237406	2L_8237406_SNP [dm3] 2L_8237406_SNP [dm6]	C	A	2.644e^-4	0.992	INTRON Pvr
2R	12857137	2R_12857137_SNP [dm3] 2R_16969632_SNP [dm6]	G	A	2.665e^-4	0.992	EXON CR44377
3L	10227402	3L_10227402_INS [dm3] 3L_10234302_INS [dm6]	A	AA	2.665e^-4	0.992	INTERGENIC
2R	19548119	2R_19548119_SNP [dm3] 2R_23660596_SNP [dm6]	T	G	2.665e^-4	0.992	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	19498283	3R_19498283_SNP [dm3] 3R_23672561_SNP [dm6]	A	C	2.670e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	607110	3L_607110_SNP [dm3] 3L_607110_SNP [dm6]	C	T	2.679e^-4	0.992	UPSTREAM Reg-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	13338756	3L_13338756_SNP [dm3] 3L_13345656_SNP [dm6]	T	G	2.686e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	10729855	3R_10729855_SNP [dm3] 3R_14904133_SNP [dm6]	T	A	2.687e^-4	0.992	UPSTREAM VhaPPA1-1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	4492151	X_4492151_SNP [dm3] X_4598118_SNP [dm6]	A	T	2.700e^-4	0.992	INTRON CR32773
2L	19397229	2L_19397229_SNP [dm3] 2L_19397229_SNP [dm6]	G	T	2.709e^-4	0.992	INTRON CG17544	TF binding site mE1_TFBS_Trl
2R	11576783	2R_11576783_INS [dm3] 2R_15689278_INS [dm6]	T	TTT	2.715e^-4	0.992	UPSTREAM CG30090 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17800674	2L_17800674_SNP [dm3] 2L_17800674_SNP [dm6]	G	T	2.717e^-4	0.992	INTRON CadN2
3L	6755582	3L_6755582_SNP [dm3] 3L_6762482_SNP [dm6]	G	C	2.721e^-4	0.992	INTRON CG32392
2L	20586112	2L_20586112_SNP [dm3] 2L_20586112_SNP [dm6]	C	T	2.723e^-4	0.992	INTRON CR44909
2R	16826000	2R_16826000_SNP [dm3] 2R_20938495_SNP [dm6]	T	C	2.726e^-4	0.992	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	15359373	X_15359373_SNP [dm3] X_15465340_SNP [dm6]	A	G	2.728e^-4	0.992	UTR_5_PRIME CG6299 UPSTREAM CG6299 DOWNSTREAM CG6294 & 1 other INTRON CG6299 & 1 other
3R	26968093	3R_26968093_SNP [dm3] 3R_31142371_SNP [dm6]	C	A	2.734e^-4	0.992	INTRON Gycbeta100B
3R	14564548	3R_14564548_SNP [dm3] 3R_18738826_SNP [dm6]	T	G	2.738e^-4	0.992	INTRON Mekk1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	5530104	2L_5530104_SNP [dm3] 2L_5530104_SNP [dm6]	C	T	2.754e^-4	0.992	SYNONYMOUS_CODING CG31915 DOWNSTREAM CG7277 INTRON Cap-D3
X	3366788	X_3366788_SNP [dm3] X_3472755_SNP [dm6]	C	A	2.758e^-4	0.992	NON_SYNONYMOUS_CODING CG12206 INTRON CR44999	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3977260	3L_3977260_SNP [dm3] 3L_3977260_SNP [dm6]	T	A	2.764e^-4	0.992	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15912792	2R_15912792_SNP [dm3] 2R_20025287_SNP [dm6]	G	T	2.772e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	19305840	3L_19305840_SNP [dm3] 3L_19312740_SNP [dm6]	A	G	2.785e^-4	0.992	INTRON pip	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7375387	3R_7375387_SNP [dm3] 3R_11549665_SNP [dm6]	A	G	2.788e^-4	0.992	INTERGENIC
2L	3032790	2L_3032790_SNP [dm3] 2L_3032790_SNP [dm6]	T	A	2.790e^-4	0.992	SYNONYMOUS_CODING CG17258 DOWNSTREAM GABPI	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
3R	26582788	3R_26582788_SNP [dm3] 3R_30757066_SNP [dm6]	C	T	2.796e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	12802213	2R_12802213_SNP [dm3] 2R_16914708_SNP [dm6]	G	C	2.797e^-4	0.992	INTERGENIC
2L	5651399	2L_5651399_SNP [dm3] 2L_5651399_SNP [dm6]	G	T	2.807e^-4	0.992	INTRON CG31646	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	14865770	3R_14865770_SNP [dm3] 3R_19040048_SNP [dm6]	A	C	2.812e^-4	0.992	SYNONYMOUS_CODING CG6026	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12583790	3L_12583790_SNP [dm3] 3L_12590690_SNP [dm6]	A	G	2.815e^-4	0.992	INTRON ara	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21372496	3R_21372496_SNP [dm3] 3R_25546774_SNP [dm6]	G	C	2.823e^-4	0.992	INTRON msi
3L	338128	3L_338128_SNP [dm3] 3L_338128_SNP [dm6]	A	C	2.824e^-4	0.992	INTRON Ptpmeg & 1 other
3R	21516345	3R_21516345_SNP [dm3] 3R_25690623_SNP [dm6]	G	T	2.824e^-4	0.992	INTERGENIC
2R	2943700	2R_2943700_SNP [dm3] 2R_7056195_SNP [dm6]	T	C	2.837e^-4	0.992	SYNONYMOUS_CODING Tsp42Eo UTR_3_PRIME Tsp42Ep DOWNSTREAM Tsp42Ep
3L	3977256	3L_3977256_SNP [dm3] 3L_3977256_SNP [dm6]	C	T	2.851e^-4	0.992	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3354903	X_3354903_SNP [dm3] X_3460870_SNP [dm6]	T	C	2.851e^-4	0.992	SYNONYMOUS_CODING CG10801 UPSTREAM CG16782 INTRON CR44999
3L	3842855	3L_3842855_SNP [dm3] 3L_3842855_SNP [dm6]	G	A	2.858e^-4	0.992	DOWNSTREAM enc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
3R	1731859	3R_1731859_INS [dm3] 3R_5906137_INS [dm6]	C	CCCATTT	2.865e^-4	0.992	INTRON CG34113
X	4106013	X_4106013_MNP [dm3] X_4211980_MNP [dm6]	GAT	ATA	2.875e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12857130	2R_12857130_SNP [dm3] 2R_16969625_SNP [dm6]	A	T	2.879e^-4	0.992	EXON CR44377
2L	12188815	2L_12188815_SNP [dm3] 2L_12188815_SNP [dm6]	T	C	2.891e^-4	0.992	INTRON aret
3L	1542937	3L_1542937_SNP [dm3] 3L_1542937_SNP [dm6]	A	C	2.899e^-4	0.992	SYNONYMOUS_CODING CG7852 UTR_3_PRIME CG7852
3L	8911243	3L_8911243_SNP [dm3] 3L_8918143_SNP [dm6]	T	G	2.913e^-4	0.992	INTRON Tsp66E
2R	19871987	2R_19871987_SNP [dm3] 2R_23984464_SNP [dm6]	A	C	2.915e^-4	0.992	SYNONYMOUS_CODING Sox14 DOWNSTREAM Phm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	18997277	X_18997277_SNP [dm3] X_19103244_SNP [dm6]	A	G	2.919e^-4	0.992	INTERGENIC
3L	338126	3L_338126_SNP [dm3] 3L_338126_SNP [dm6]	T	A	2.920e^-4	0.992	INTRON Ptpmeg & 1 other
2L	6571680	2L_6571680_SNP [dm3] 2L_6571680_SNP [dm6]	T	C	2.922e^-4	0.992	UTR_3_PRIME CG11319 DOWNSTREAM CG11319 INTRON CG11319
3L	10507014	3L_10507014_INS [dm3] 3L_10513914_INS [dm6]	G	GTTTG	2.930e^-4	0.992	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20636491	2L_20636491_SNP [dm3] 2L_20636491_SNP [dm6]	A	G	2.931e^-4	0.992	INTERGENIC	transposable element FlyBase
2R	13504560	2R_13504560_SNP [dm3] 2R_17617055_SNP [dm6]	G	T	2.952e^-4	0.992	UTR_3_PRIME CG44403 DOWNSTREAM snoRNA:Or-aca4 INTRON CG10936	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16198026	2R_16198026_SNP [dm3] 2R_20310521_SNP [dm6]	T	C	2.952e^-4	0.992	SYNONYMOUS_CODING CG13868	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1720473	2L_1720473_SNP [dm3] 2L_1720473_SNP [dm6]	A	T	2.962e^-4	0.992	INTRON Rim2
2R	6090511	2R_6090511_SNP [dm3] 2R_10203006_SNP [dm6]	C	T	2.964e^-4	0.992	DOWNSTREAM Hr46 INTERGENIC
3R	26849933	3R_26849933_SNP [dm3] 3R_31024211_SNP [dm6]	A	C	2.967e^-4	0.992	INTERGENIC
2L	12992797	2L_12992797_SNP [dm3] 2L_12992797_SNP [dm6]	A	T	2.967e^-4	0.992	DOWNSTREAM CG12404 INTERGENIC
3L	560162	3L_560162_SNP [dm3] 3L_560162_SNP [dm6]	T	C	2.978e^-4	0.992	INTRON hipk
3R	25827756	3R_25827756_SNP [dm3] 3R_30002034_SNP [dm6]	C	T	2.995e^-4	0.992	INTRON Tace	TF binding site mE1_TFBS_chinmo
2R	7678791	2R_7678791_SNP [dm3] 2R_11791286_SNP [dm6]	G	T	3.006e^-4	0.992	INTRON ths
2R	15974282	2R_15974282_SNP [dm3] 2R_20086777_SNP [dm6]	T	G	3.007e^-4	0.992	DOWNSTREAM CR44632 INTERGENIC
2L	1601816	2L_1601816_SNP [dm3] 2L_1601816_SNP [dm6]	T	C	3.011e^-4	0.992	SYNONYMOUS_CODING haf INTRON CG31935	TF binding site mE1_TFBS_cad
3R	25249837	3R_25249837_INS [dm3] 3R_29424115_INS [dm6]	G	GAGCGCGAG	3.014e^-4	0.992	INTRON Ptp99A
2L	6217325	2L_6217325_SNP [dm3] 2L_6217325_SNP [dm6]	A	T	3.016e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	12035659	X_12035659_SNP [dm3] X_12141626_SNP [dm6]	A	G	3.019e^-4	0.992	INTRON Ten-a
X	2570915	X_2570915_SNP [dm3] X_2676882_SNP [dm6]	A	T	3.030e^-4	0.992	DOWNSTREAM sgg & 1 other INTRON sgg
3R	14564498	3R_14564498_SNP [dm3] 3R_18738776_SNP [dm6]	A	T	3.039e^-4	0.992	INTRON Mekk1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	6817947	3R_6817947_SNP [dm3] 3R_10992225_SNP [dm6]	G	A	3.047e^-4	0.992	INTRON CG34114
3L	14590624	3L_14590624_SNP [dm3] 3L_14597524_SNP [dm6]	T	C	3.054e^-4	0.992	INTRON HGTX
2R	4958002	2R_4958002_SNP [dm3] 2R_9070497_SNP [dm6]	G	A	3.059e^-4	0.992	INTRON ana	TF binding site BDTNP1_TFBS_Med
2L	9774169	2L_9774169_SNP [dm3] 2L_9774169_SNP [dm6]	C	T	3.063e^-4	0.992	NON_SYNONYMOUS_CODING ppk11
3L	18694125	3L_18694125_SNP [dm3] 3L_18701025_SNP [dm6]	C	T	3.067e^-4	0.992	INTERGENIC
3R	25553322	3R_25553322_SNP [dm3] 3R_29727600_SNP [dm6]	T	G	3.068e^-4	0.992	INTRON Kul	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	13301737	X_13301737_SNP [dm3] X_13407704_SNP [dm6]	G	A	3.079e^-4	0.992	INTRON GstT4
3L	2171740	3L_2171740_SNP [dm3] 3L_2171740_SNP [dm6]	T	A	3.083e^-4	0.992	UPSTREAM CG5704 EXON CR15821
2R	16392731	2R_16392731_SNP [dm3] 2R_20505226_SNP [dm6]	G	T	3.097e^-4	0.992	NON_SYNONYMOUS_CODING Obp57a UPSTREAM CR44645 DOWNSTREAM Obp57b & 1 other
2R	16384348	2R_16384348_SNP [dm3] 2R_20496843_SNP [dm6]	G	A	3.103e^-4	0.992	INTERGENIC
2R	13504561	2R_13504561_SNP [dm3] 2R_17617056_SNP [dm6]	C	T	3.109e^-4	0.992	UTR_3_PRIME CG44403 DOWNSTREAM snoRNA:Or-aca4 INTRON CG10936	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8208026	2L_8208026_SNP [dm3] 2L_8208026_SNP [dm6]	T	C	3.122e^-4	0.992	SYNONYMOUS_CODING CG8419	TF binding site mE1_TFBS_sens
X	16760851	X_16760851_SNP [dm3] X_16866818_SNP [dm6]	T	A	3.130e^-4	0.992	INTRON CG13003
3L	17681124	3L_17681124_DEL [dm3] 3L_17688024_DEL [dm6]	CT	C	3.134e^-4	0.992	INTERGENIC
2L	20688331	2L_20688331_SNP [dm3] 2L_20688331_SNP [dm6]	G	A	3.135e^-4	0.992	SYNONYMOUS_CODING Hr38	TF binding site mE1_TFBS_chinmo
2L	22215016	2L_22215016_SNP [dm3] 2L_22215016_SNP [dm6]	T	A	3.140e^-4	0.992	UPSTREAM Ir40a INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14634605	3L_14634605_SNP [dm3] 3L_14641505_SNP [dm6]	T	A	3.144e^-4	0.992	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	4700120	3L_4700120_SNP [dm3] 3L_4700120_SNP [dm6]	G	A	3.146e^-4	0.992	INTRON RhoGEF64C
2L	19639435	2L_19639435_SNP [dm3] 2L_19639435_SNP [dm6]	A	T	3.151e^-4	0.992	INTRON Lar
X	4492312	X_4492312_SNP [dm3] X_4598279_SNP [dm6]	C	T	3.152e^-4	0.992	INTRON CR32773
2L	5386466	2L_5386466_SNP [dm3] 2L_5386466_SNP [dm6]	C	G	3.157e^-4	0.992	INTERGENIC
3L	1844829	3L_1844829_SNP [dm3] 3L_1844829_SNP [dm6]	C	A	3.157e^-4	0.992	INTERGENIC
3L	1844850	3L_1844850_SNP [dm3] 3L_1844850_SNP [dm6]	A	T	3.157e^-4	0.992	INTERGENIC
2L	5151229	2L_5151229_SNP [dm3] 2L_5151229_SNP [dm6]	A	G	3.165e^-4	0.992	UPSTREAM Msp300 INTRON Msp300	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
2L	4116515	2L_4116515_SNP [dm3] 2L_4116515_SNP [dm6]	T	A	3.169e^-4	0.992	DOWNSTREAM ed INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3562653	3L_3562653_SNP [dm3] 3L_3562653_SNP [dm6]	T	C	3.175e^-4	0.992	INTRON Eip63E
2L	20557407	2L_20557407_SNP [dm3] 2L_20557407_SNP [dm6]	G	T	3.181e^-4	0.992	INTERGENIC
X	21211560	X_21211560_SNP [dm3] X_21340533_SNP [dm6]	G	C	3.185e^-4	0.992	SYNONYMOUS_CODING fliI UPSTREAM tty	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	20218834	3L_20218834_SNP [dm3] 3L_20225734_SNP [dm6]	T	A	3.186e^-4	0.992	UPSTREAM Su_var_3-3 DOWNSTREAM CG17147 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	19374546	3L_19374546_SNP [dm3] 3L_19381446_SNP [dm6]	T	C	3.190e^-4	0.992	NON_SYNONYMOUS_CODING CG32206
3L	11097821	3L_11097821_SNP [dm3] 3L_11104721_SNP [dm6]	A	C	3.191e^-4	0.992	UPSTREAM CG32071 INTERGENIC
3R	25375139	3R_25375139_SNP [dm3] 3R_29549417_SNP [dm6]	G	T	3.192e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	16384257	2R_16384257_SNP [dm3] 2R_20496752_SNP [dm6]	A	C	3.194e^-4	0.992	INTERGENIC
2L	19398941	2L_19398941_SNP [dm3] 2L_19398941_SNP [dm6]	C	T	3.201e^-4	0.992	UPSTREAM CG17544 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25376171	3R_25376171_DEL [dm3] 3R_29550449_DEL [dm6]	GG	G	3.201e^-4	0.992	INTERGENIC
3L	2377096	3L_2377096_SNP [dm3] 3L_2377096_SNP [dm6]	A	G	3.202e^-4	0.992	SYNONYMOUS_CODING CG15877 UPSTREAM CG45186 DOWNSTREAM CG9004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3L	608671	3L_608671_SNP [dm3] 3L_608671_SNP [dm6]	T	G	3.204e^-4	0.992	DOWNSTREAM CR44513 INTERGENIC
2R	15824720	2R_15824720_SNP [dm3] 2R_19937215_SNP [dm6]	G	T	3.208e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15974199	2R_15974199_SNP [dm3] 2R_20086694_SNP [dm6]	A	T	3.213e^-4	0.992	EXON CR44632
2R	18038670	2R_18038670_SNP [dm3] 2R_22151165_SNP [dm6]	C	T	3.234e^-4	0.992	INTRON a
3R	13921348	3R_13921348_SNP [dm3] 3R_18095626_SNP [dm6]	G	A	3.245e^-4	0.992	INTRON sr
2L	9268937	2L_9268937_SNP [dm3] 2L_9268937_SNP [dm6]	T	A	3.246e^-4	0.992	INTRON Ggamma30A
X	2149561	X_2149561_SNP [dm3] X_2255528_SNP [dm6]	A	G	3.255e^-4	0.992	UTR_3_PRIME CG3078	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
X	11750305	X_11750305_SNP [dm3] X_11856272_SNP [dm6]	T	C	3.257e^-4	0.992	SYNONYMOUS_CODING ATP7	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
3L	16717415	3L_16717415_SNP [dm3] 3L_16724315_SNP [dm6]	A	G	3.261e^-4	0.992	UTR_3_PRIME Dab UPSTREAM CG13031 DOWNSTREAM CG13026
2R	12610727	2R_12610727_SNP [dm3] 2R_16723222_SNP [dm6]	C	G	3.262e^-4	0.992	INTRON CG30463
3L	3783759	3L_3783759_INS [dm3] 3L_3783759_INS [dm6]	C	CAA	3.269e^-4	0.992	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	13759817	3L_13759817_SNP [dm3] 3L_13766717_SNP [dm6]	A	T	3.270e^-4	0.992	INTRON bru-3
X	5764422	X_5764422_SNP [dm3] X_5870389_SNP [dm6]	G	T	3.274e^-4	0.992	DOWNSTREAM GAA1 & 1 other INTERGENIC
3R	19125326	3R_19125326_SNP [dm3] 3R_23299604_SNP [dm6]	C	T	3.279e^-4	0.992	INTRON pnt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	17681118	3L_17681118_SNP [dm3] 3L_17688018_SNP [dm6]	C	A	3.279e^-4	0.992	INTERGENIC
2R	13328876	2R_13328876_SNP [dm3] 2R_17441371_SNP [dm6]	T	A	3.305e^-4	0.992	INTRON EDTP & 1 other
X	16020386	X_16020386_DEL [dm3] X_16126353_DEL [dm6]	TCCT	T	3.306e^-4	0.992	INTRON disco-r
2L	5653718	2L_5653718_SNP [dm3] 2L_5653718_SNP [dm6]	G	T	3.315e^-4	0.992	INTRON CG31646
2L	19400313	2L_19400313_SNP [dm3] 2L_19400313_SNP [dm6]	A	C	3.317e^-4	0.992	DOWNSTREAM Pax INTERGENIC
2L	16569330	2L_16569330_SNP [dm3] 2L_16569330_SNP [dm6]	G	A	3.322e^-4	0.992	INTRON CG42389
3L	20370149	3L_20370149_SNP [dm3] 3L_20377049_SNP [dm6]	T	A	3.325e^-4	0.992	UPSTREAM RhoBTB INTRON RhoBTB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk
3R	25827877	3R_25827877_SNP [dm3] 3R_30002155_SNP [dm6]	C	T	3.326e^-4	0.992	SYNONYMOUS_CODING Tace UTR_3_PRIME Tace	TF binding site mE1_TFBS_chinmo
3R	11557213	3R_11557213_SNP [dm3] 3R_15731491_SNP [dm6]	A	G	3.339e^-4	0.992	UPSTREAM CG34274 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	19400265	2L_19400265_SNP [dm3] 2L_19400265_SNP [dm6]	G	T	3.348e^-4	0.992	DOWNSTREAM Pax INTERGENIC
2L	9154832	2L_9154832_SNP [dm3] 2L_9154832_SNP [dm6]	C	T	3.349e^-4	0.992	INTRON CG32982
3L	20461211	3L_20461211_SNP [dm3] 3L_20468111_SNP [dm6]	G	A	3.353e^-4	0.992	INTRON CG5955	TF binding site mE1_TFBS_cad
3L	14572752	3L_14572752_SNP [dm3] 3L_14579652_SNP [dm6]	G	T	3.354e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	22268931	3R_22268931_SNP [dm3] 3R_26443209_SNP [dm6]	G	A	3.359e^-4	0.992	INTRON tx
2R	19660590	2R_19660590_SNP [dm3] 2R_23773067_SNP [dm6]	T	G	3.361e^-4	0.992	INTRON CG9850
3L	556137	3L_556137_SNP [dm3] 3L_556137_SNP [dm6]	G	A	3.369e^-4	0.992	INTRON hipk	TF binding site mE1_TFBS_inv
3L	10487774	3L_10487774_SNP [dm3] 3L_10494674_SNP [dm6]	A	C	3.384e^-4	0.992	INTRON A2bp1
2L	2097166	2L_2097166_SNP [dm3] 2L_2097166_SNP [dm6]	T	C	3.385e^-4	0.992	INTRON dpr3
3R	24608879	3R_24608879_SNP [dm3] 3R_28783157_SNP [dm6]	C	T	3.391e^-4	0.992	INTERGENIC
X	4105988	X_4105988_SNP [dm3] X_4211955_SNP [dm6]	T	A	3.395e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4970792	2R_4970792_SNP [dm3] 2R_9083287_SNP [dm6]	C	T	3.395e^-4	0.992	SYNONYMOUS_CODING CNT1 DOWNSTREAM CG8083
X	7963434	X_7963434_SNP [dm3] X_8069401_SNP [dm6]	G	C	3.400e^-4	0.992	UTR_3_PRIME mys DOWNSTREAM Upf2
X	5440161	X_5440161_SNP [dm3] X_5546128_SNP [dm6]	A	G	3.402e^-4	0.992	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	2775880	X_2775880_SNP [dm3] X_2881847_SNP [dm6]	T	C	3.403e^-4	0.992	DOWNSTREAM CG14418 INTRON kirre
3L	15591987	3L_15591987_SNP [dm3] 3L_15598887_SNP [dm6]	A	G	3.406e^-4	0.992	INTRON RhoGAP71E
3R	13913199	3R_13913199_SNP [dm3] 3R_18087477_SNP [dm6]	C	T	3.413e^-4	0.992	INTERGENIC
X	7774253	X_7774253_SNP [dm3] X_7880220_SNP [dm6]	A	G	3.417e^-4	0.992	SYNONYMOUS_CODING Ir7e	TF binding site mE1_TFBS_HSA
X	11331203	X_11331203_SNP [dm3] X_11437170_SNP [dm6]	A	T	3.419e^-4	0.992	INTRON Evi5
3L	20363742	3L_20363742_SNP [dm3] 3L_20370642_SNP [dm6]	A	C	3.422e^-4	0.992	NON_SYNONYMOUS_CODING CG13247 DOWNSTREAM in
3R	25554117	3R_25554117_SNP [dm3] 3R_29728395_SNP [dm6]	C	T	3.424e^-4	0.992	SYNONYMOUS_CODING Kul	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
X	10050809	X_10050809_SNP [dm3] X_10156776_SNP [dm6]	G	A	3.428e^-4	0.992	INTRON CR44894
X	3367471	X_3367471_SNP [dm3] X_3473438_SNP [dm6]	C	T	3.440e^-4	0.992	UTR_5_PRIME CG12206 INTRON CR44999 & 1 other	TF binding site mE1_TFBS_cad
3L	14953507	3L_14953507_SNP [dm3] 3L_14960407_SNP [dm6]	T	G	3.443e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3L	1543958	3L_1543958_SNP [dm3] 3L_1543958_SNP [dm6]	C	T	3.462e^-4	0.992	SYNONYMOUS_CODING CG7852 UTR_3_PRIME CG7852 DOWNSTREAM CG32313	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3859591	2L_3859591_SNP [dm3] 2L_3859591_SNP [dm6]	G	A	3.462e^-4	0.992	INTERGENIC
2L	5388110	2L_5388110_SNP [dm3] 2L_5388110_SNP [dm6]	G	A	3.463e^-4	0.992	EXON CR44745	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6535859	X_6535859_SNP [dm3] X_6641826_SNP [dm6]	T	C	3.463e^-4	0.992	INTRON pigs
3L	20363540	3L_20363540_SNP [dm3] 3L_20370440_SNP [dm6]	C	A	3.476e^-4	0.992	UTR_5_PRIME CG13247 DOWNSTREAM in
3R	9966608	3R_9966608_DEL [dm3] 3R_14140886_DEL [dm6]	GC	G	3.479e^-4	0.992	INTERGENIC
2L	22306115	2L_22306115_SNP [dm3] 2L_22306115_SNP [dm6]	C	T	3.491e^-4	0.992	INTERGENIC
2L	17803429	2L_17803429_SNP [dm3] 2L_17803429_SNP [dm6]	A	G	3.491e^-4	0.992	SYNONYMOUS_CODING CadN2
2R	12801487	2R_12801487_SNP [dm3] 2R_16913982_SNP [dm6]	A	G	3.492e^-4	0.992	INTERGENIC
3R	19803067	3R_19803067_SNP [dm3] 3R_23977345_SNP [dm6]	C	G	3.494e^-4	0.992	INTRON CG31140
3L	14663100	3L_14663100_SNP [dm3] 3L_14670000_SNP [dm6]	A	G	3.494e^-4	0.992	SYNONYMOUS_CODING dlp
3L	14590852	3L_14590852_INS [dm3] 3L_14597752_INS [dm6]	A	AGCAA	3.495e^-4	0.992	INTRON HGTX	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad
3L	15327231	3L_15327231_INS [dm3] 3L_15334131_INS [dm6]	C	CC	3.501e^-4	0.992	UPSTREAM CR43992 INTERGENIC	TF binding site mE1_TFBS_sens
3L	500378	3L_500378_SNP [dm3] 3L_500378_SNP [dm6]	G	A	3.504e^-4	0.992	UTR_5_PRIME CG34267 UPSTREAM CG34268 INTRON klar
3R	5771353	3R_5771353_SNP [dm3] 3R_9945631_SNP [dm6]	A	G	3.518e^-4	0.992	DOWNSTREAM Glut4EF INTRON Glut4EF	TF binding site mE1_TFBS_cad
2L	5386421	2L_5386421_SNP [dm3] 2L_5386421_SNP [dm6]	T	A	3.530e^-4	0.992	INTERGENIC
3L	607675	3L_607675_SNP [dm3] 3L_607675_SNP [dm6]	A	T	3.548e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	8209025	2L_8209025_SNP [dm3] 2L_8209025_SNP [dm6]	C	A	3.553e^-4	0.992	SYNONYMOUS_CODING CG8419 DOWNSTREAM Su_var_205	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens
3L	1862639	3L_1862639_DEL [dm3] 3L_1862639_DEL [dm6]	TAT	T	3.557e^-4	0.992	UPSTREAM R DOWNSTREAM HBS1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12801381	2R_12801381_SNP [dm3] 2R_16913876_SNP [dm6]	T	C	3.558e^-4	0.992	INTERGENIC
3R	26936058	3R_26936058_SNP [dm3] 3R_31110336_SNP [dm6]	G	A	3.559e^-4	0.992	INTERGENIC
2R	13966490	2R_13966490_SNP [dm3] 2R_18078985_SNP [dm6]	A	G	3.563e^-4	0.992	INTRON CG34386
3R	19089508	3R_19089508_SNP [dm3] 3R_23263786_SNP [dm6]	A	T	3.567e^-4	0.992	UTR_3_PRIME orb DOWNSTREAM orb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5181966	2R_5181966_SNP [dm3] 2R_9294461_SNP [dm6]	T	A	3.568e^-4	0.992	UPSTREAM Drep-2 INTRON Drep-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	20965920	X_20965920_SNP [dm3] X_21094893_SNP [dm6]	G	A	3.568e^-4	0.992	DOWNSTREAM CG15446 INTRON stg1 & 1 other
2R	16126705	2R_16126705_SNP [dm3] 2R_20239200_SNP [dm6]	G	A	3.571e^-4	0.992	SYNONYMOUS_CODING CG13869 UTR_3_PRIME CG11099 UPSTREAM Efhc1.2
3L	18951581	3L_18951581_SNP [dm3] 3L_18958481_SNP [dm6]	T	C	3.579e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_sbb
3L	20222913	3L_20222913_SNP [dm3] 3L_20229813_SNP [dm6]	A	G	3.581e^-4	0.992	UTR_3_PRIME Su_var_3-3	TF binding site mE1_TFBS_cad
3R	8394205	3R_8394205_SNP [dm3] 3R_12568483_SNP [dm6]	T	C	3.585e^-4	0.992	INTRON Octbeta2R
2L	13708999	2L_13708999_SNP [dm3] 2L_13708999_SNP [dm6]	C	A	3.587e^-4	0.992	NON_SYNONYMOUS_CODING CG7311 SYNONYMOUS_CODING CG7311 INTRON CG31814	TF binding site mE1_TFBS_inv
2L	13709158	2L_13709158_SNP [dm3] 2L_13709158_SNP [dm6]	G	A	3.587e^-4	0.992	SYNONYMOUS_CODING CG7311 UTR_3_PRIME CG7311 INTRON CG31814	TF binding site mE1_TFBS_inv
3R	16553795	3R_16553795_SNP [dm3] 3R_20728073_SNP [dm6]	C	G	3.589e^-4	0.992	INTERGENIC
3R	23521220	3R_23521220_SNP [dm3] 3R_27695498_SNP [dm6]	C	A	3.590e^-4	0.992	SYNONYMOUS_CODING CG43320 DOWNSTREAM CG43319 & 2 others	TF binding site mE1_TFBS_sens
3R	5724485	3R_5724485_SNP [dm3] 3R_9898763_SNP [dm6]	C	A	3.593e^-4	0.992	INTRON Glut4EF
2R	15791464	2R_15791464_SNP [dm3] 2R_19903959_SNP [dm6]	G	C	3.598e^-4	0.992	INTERGENIC
3L	7834522	3L_7834522_SNP [dm3] 3L_7841422_SNP [dm6]	G	A	3.605e^-4	0.992	INTRON Pdp1	regulatory region REDfly_CRMs
X	3306021	X_3306021_INS [dm3] X_3411988_INS [dm6]	A	GCAAC	3.605e^-4	0.992	INTRON CR44999 & 1 other
2R	5101125	2R_5101125_DEL [dm3] 2R_9213620_DEL [dm6]	TGGGACCT	T	3.611e^-4	0.992	UPSTREAM CR44451 EXON CR45309
3L	6935207	3L_6935207_DEL [dm3] 3L_6942107_DEL [dm6]	TGTCCGTGGTTTATCATGAT...	T	3.622e^-4	0.992	UPSTREAM tow INTERGENIC
3R	20264032	3R_20264032_SNP [dm3] 3R_24438310_SNP [dm6]	C	A	3.624e^-4	0.992	INTRON nAChRalpha1
2L	20625504	2L_20625504_SNP [dm3] 2L_20625504_SNP [dm6]	G	A	3.625e^-4	0.992	EXON CR44909
3L	17373575	3L_17373575_SNP [dm3] 3L_17380475_SNP [dm6]	C	G	3.641e^-4	0.992	NON_SYNONYMOUS_CODING CG13728 UPSTREAM Cad74A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	14860146	3L_14860146_SNP [dm3] 3L_14867046_SNP [dm6]	C	T	3.644e^-4	0.992	INTRON CG17839
3L	8873815	3L_8873815_SNP [dm3] 3L_8880715_SNP [dm6]	A	T	3.646e^-4	0.992	INTRON dally
3R	9912551	3R_9912551_DEL [dm3] 3R_14086829_DEL [dm6]	TT	T	3.646e^-4	0.992	INTRON foxo
2L	20678789	2L_20678789_SNP [dm3] 2L_20678789_SNP [dm6]	G	A	3.647e^-4	0.992	UTR_3_PRIME ik2 DOWNSTREAM Cen
3L	3985441	3L_3985441_SNP [dm3] 3L_3985441_SNP [dm6]	T	A	3.652e^-4	0.992	SYNONYMOUS_CODING scrt
2R	16385365	2R_16385365_SNP [dm3] 2R_20497860_SNP [dm6]	T	G	3.661e^-4	0.992	INTERGENIC
3L	14953420	3L_14953420_SNP [dm3] 3L_14960320_SNP [dm6]	A	G	3.665e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3L	11142591	3L_11142591_SNP [dm3] 3L_11149491_SNP [dm6]	A	G	3.669e^-4	0.992	DOWNSTREAM CG6216 INTRON CG32082
2L	8327673	2L_8327673_SNP [dm3] 2L_8327673_SNP [dm6]	T	A	3.678e^-4	0.992	INTRON CG14275
2R	13578674	2R_13578674_SNP [dm3] 2R_17691169_SNP [dm6]	A	G	3.686e^-4	0.992	SYNONYMOUS_CODING swi2 DOWNSTREAM HPS4	TF binding site mE1_TFBS_cad
3R	22251009	3R_22251009_SNP [dm3] 3R_26425287_SNP [dm6]	A	G	3.689e^-4	0.992	UPSTREAM CR31084 & 1 other DOWNSTREAM CG34291 INTERGENIC
3R	10729858	3R_10729858_SNP [dm3] 3R_14904136_SNP [dm6]	T	G	3.698e^-4	0.992	UPSTREAM VhaPPA1-1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	10599050	3R_10599050_SNP [dm3] 3R_14773328_SNP [dm6]	C	T	3.704e^-4	0.992	INTRON jvl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2808361	X_2808361_SNP [dm3] X_2914328_SNP [dm6]	G	C	3.723e^-4	0.992	INTRON kirre
3L	14571863	3L_14571863_SNP [dm3] 3L_14578763_SNP [dm6]	C	A	3.727e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	14159606	3L_14159606_SNP [dm3] 3L_14166506_SNP [dm6]	C	A	3.756e^-4	0.992	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6331448	3L_6331448_DEL [dm3] 3L_6338348_DEL [dm6]	GCTGTAGTG	AAA	3.770e^-4	0.992	INTRON CG13300	TF binding site BDTNP1_TFBS_twi
3L	6755902	3L_6755902_SNP [dm3] 3L_6762802_SNP [dm6]	T	G	3.771e^-4	0.992	INTRON CG32392
2R	11302258	2R_11302258_SNP [dm3] 2R_15414753_SNP [dm6]	A	G	3.780e^-4	0.992	INTRON CG43729
2L	5659348	2L_5659348_SNP [dm3] 2L_5659348_SNP [dm6]	G	T	3.788e^-4	0.992	UPSTREAM CG31646 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	9835166	3L_9835166_SNP [dm3] 3L_9842066_SNP [dm6]	C	T	3.795e^-4	0.992	INTRON RasGAP1
2R	16390170	2R_16390170_SNP [dm3] 2R_20502665_SNP [dm6]	T	C	3.805e^-4	0.992	UPSTREAM Obp57c INTERGENIC	regulatory region REDfly_CRMs
2R	19548145	2R_19548145_SNP [dm3] 2R_23660622_SNP [dm6]	T	C	3.808e^-4	0.992	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	14951349	3L_14951349_SNP [dm3] 3L_14958249_SNP [dm6]	T	G	3.825e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	14192978	3L_14192978_DEL [dm3] 3L_14199878_DEL [dm6]	ATTGAA	A	3.838e^-4	0.992	INTRON nuf	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17203424	2L_17203424_SNP [dm3] 2L_17203424_SNP [dm6]	A	T	3.839e^-4	0.992	INTRON beat-IIIc
2R	19656744	2R_19656744_SNP [dm3] 2R_23769221_SNP [dm6]	G	A	3.848e^-4	0.992	INTRON CG9850
X	3306016	X_3306016_INS [dm3] X_3411983_INS [dm6]	A	AAAG	3.848e^-4	0.992	INTRON CR44999 & 1 other
2L	9269139	2L_9269139_SNP [dm3] 2L_9269139_SNP [dm6]	C	T	3.851e^-4	0.992	INTRON Ggamma30A
X	21202004	X_21202004_SNP [dm3] X_21330977_SNP [dm6]	A	G	3.851e^-4	0.992	UTR_3_PRIME tty DOWNSTREAM tty	TF binding site mE1_TFBS_kn
2R	16393517	2R_16393517_SNP [dm3] 2R_20506012_SNP [dm6]	G	A	3.866e^-4	0.992	UPSTREAM CR44645 DOWNSTREAM Obp57b & 1 other EXON CR44644
3L	9801695	3L_9801695_SNP [dm3] 3L_9808595_SNP [dm6]	G	A	3.870e^-4	0.992	UTR_3_PRIME CG32052	TF binding site BDTNP1_TFBS_twi
X	20965809	X_20965809_SNP [dm3] X_21094782_SNP [dm6]	C	G	3.874e^-4	0.992	DOWNSTREAM CG15446 INTRON stg1 & 1 other
X	20965820	X_20965820_SNP [dm3] X_21094793_SNP [dm6]	G	T	3.874e^-4	0.992	DOWNSTREAM CG15446 INTRON stg1 & 1 other
2R	16395011	2R_16395011_SNP [dm3] 2R_20507506_SNP [dm6]	T	G	3.875e^-4	0.992	UPSTREAM CR44646 DOWNSTREAM CR44645 INTERGENIC
3L	6331761	3L_6331761_SNP [dm3] 3L_6338661_SNP [dm6]	T	C	3.879e^-4	0.992	INTRON CG13300	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20250033	2L_20250033_SNP [dm3] 2L_20250033_SNP [dm6]	G	A	3.884e^-4	0.992	UPSTREAM CR40172 INTERGENIC
3L	20404773	3L_20404773_SNP [dm3] 3L_20411673_SNP [dm6]	A	T	3.884e^-4	0.992	INTERGENIC
3R	25331192	3R_25331192_SNP [dm3] 3R_29505470_SNP [dm6]	T	G	3.887e^-4	0.992	INTERGENIC
3L	19196876	3L_19196876_SNP [dm3] 3L_19203776_SNP [dm6]	G	A	3.893e^-4	0.992	INTRON fz2
3L	18081695	3L_18081695_SNP [dm3] 3L_18088595_SNP [dm6]	T	C	3.893e^-4	0.992	UTR_3_PRIME CG13698 DOWNSTREAM CG13698
2R	16409469	2R_16409469_SNP [dm3] 2R_20521964_SNP [dm6]	C	T	3.901e^-4	0.992	INTERGENIC
X	3367302	X_3367302_SNP [dm3] X_3473269_SNP [dm6]	A	G	3.901e^-4	0.992	UTR_5_PRIME CG12206 INTRON CR44999	TF binding site mE1_TFBS_cad
2R	19660821	2R_19660821_SNP [dm3] 2R_23773298_SNP [dm6]	C	T	3.903e^-4	0.992	INTRON CG9850
2R	9233176	2R_9233176_SNP [dm3] 2R_13345671_SNP [dm6]	A	T	3.909e^-4	0.992	INTRON CR44206
2L	1602282	2L_1602282_SNP [dm3] 2L_1602282_SNP [dm6]	T	G	3.909e^-4	0.992	INTRON CG31935 & 1 other
3R	22002077	3R_22002077_SNP [dm3] 3R_26176355_SNP [dm6]	C	A	3.910e^-4	0.992	INTRON CG31323
3L	14971077	3L_14971077_SNP [dm3] 3L_14977977_SNP [dm6]	C	A	3.911e^-4	0.992	UPSTREAM CR43432 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16803914	3R_16803914_SNP [dm3] 3R_20978192_SNP [dm6]	C	T	3.923e^-4	0.992	UTR_5_PRIME Calx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	11689669	3R_11689669_SNP [dm3] 3R_15863947_SNP [dm6]	T	G	3.923e^-4	0.992	INTRON CG31183
X	6205645	X_6205645_INS [dm3] X_6311612_INS [dm6]	ATA	GGTCCT	3.930e^-4	0.992	INTRON CG15894
3L	12235537	3L_12235537_INS [dm3] 3L_12242437_INS [dm6]	A	ACAATA	3.933e^-4	0.992	INTRON app
X	20473740	X_20473740_SNP [dm3] X_20602713_SNP [dm6]	T	G	3.933e^-4	0.992	INTRON RunxA
2L	11007011	2L_11007011_SNP [dm3] 2L_11007011_SNP [dm6]	C	T	3.940e^-4	0.992	SYNONYMOUS_CODING Nup154	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	9826377	3L_9826377_SNP [dm3] 3L_9833277_SNP [dm6]	A	T	3.943e^-4	0.992	UTR_3_PRIME CG43897
3L	14582094	3L_14582094_SNP [dm3] 3L_14588994_SNP [dm6]	A	C	3.951e^-4	0.992	INTRON HGTX
2L	16555173	2L_16555173_SNP [dm3] 2L_16555173_SNP [dm6]	G	A	3.955e^-4	0.992	INTRON CG42389
3L	607828	3L_607828_SNP [dm3] 3L_607828_SNP [dm6]	C	T	3.961e^-4	0.992	INTERGENIC
2L	18971035	2L_18971035_SNP [dm3] 2L_18971035_SNP [dm6]	A	C	3.965e^-4	0.992	NON_SYNONYMOUS_CODING Tango6 DOWNSTREAM CG10639	TF binding site mE1_TFBS_sens
3L	2377198	3L_2377198_SNP [dm3] 3L_2377198_SNP [dm6]	A	T	3.980e^-4	0.992	NON_SYNONYMOUS_CODING CG15877 UPSTREAM CG45186 DOWNSTREAM CG9004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2R	19416357	2R_19416357_SNP [dm3] 2R_23528834_SNP [dm6]	G	A	3.980e^-4	0.992	NON_SYNONYMOUS_CODING bw DOWNSTREAM mi
2R	12856716	2R_12856716_SNP [dm3] 2R_16969211_SNP [dm6]	T	C	3.982e^-4	0.992	UPSTREAM CR44377 INTERGENIC
3L	9200314	3L_9200314_SNP [dm3] 3L_9207214_SNP [dm6]	T	C	3.984e^-4	0.992	UPSTREAM Slc45-1 INTRON Slc45-1
3R	20720568	3R_20720568_SNP [dm3] 3R_24894846_SNP [dm6]	T	C	3.990e^-4	0.992	UPSTREAM CG31121 INTRON CG11069	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	21439784	X_21439784_SNP [dm3] X_21568757_SNP [dm6]	A	T	3.991e^-4	0.992	INTERGENIC
3L	549471	3L_549471_SNP [dm3] 3L_549471_SNP [dm6]	T	C	3.996e^-4	0.992	INTRON hipk	TF binding site BDTNP1_TFBS_dl
3L	20313894	3L_20313894_SNP [dm3] 3L_20320794_SNP [dm6]	G	A	3.996e^-4	0.992	UPSTREAM Spn77Bb DOWNSTREAM Spn77Ba INTERGENIC
2R	19414133	2R_19414133_SNP [dm3] 2R_23526610_SNP [dm6]	A	C	4.001e^-4	0.992	SYNONYMOUS_CODING mi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20618459	2L_20618459_SNP [dm3] 2L_20618459_SNP [dm6]	G	C	4.021e^-4	0.992	UPSTREAM mir-288 INTRON CR44909 EXON mir-288
3R	26086295	3R_26086295_SNP [dm3] 3R_30260573_SNP [dm6]	G	A	4.023e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	1327461	3L_1327461_SNP [dm3] 3L_1327461_SNP [dm6]	C	T	4.031e^-4	0.992	SYNONYMOUS_CODING Myo61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12588988	3L_12588988_SNP [dm3] 3L_12595888_SNP [dm6]	T	C	4.031e^-4	0.992	UTR_3_PRIME ara
X	12517632	X_12517632_SNP [dm3] X_12623599_SNP [dm6]	C	G	4.033e^-4	0.992	UPSTREAM CG15728 DOWNSTREAM CR44568 INTERGENIC
2L	5367634	2L_5367634_SNP [dm3] 2L_5367634_SNP [dm6]	G	A	4.039e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	10922166	X_10922166_SNP [dm3] X_11028133_SNP [dm6]	T	C	4.039e^-4	0.992	INTRON CG42339
2L	22195739	2L_22195739_SNP [dm3] 2L_22195739_SNP [dm6]	C	T	4.058e^-4	0.992	INTRON Ir40a	transposable element FlyBase
X	12348913	X_12348913_SNP [dm3] X_12454880_SNP [dm6]	G	T	4.059e^-4	0.992	NON_SYNONYMOUS_CODING CG15927 UPSTREAM CR45615
2L	3333577	2L_3333577_INS [dm3] 2L_3333577_INS [dm6]	G	GGAGTTACTCAAAGTG...	4.065e^-4	0.992	DOWNSTREAM CG3285 INTRON CG15408	TF binding site mE1_TFBS_cad
2R	5861927	2R_5861927_SNP [dm3] 2R_9974422_SNP [dm6]	A	C	4.073e^-4	0.992	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16793408	2R_16793408_SNP [dm3] 2R_20905903_SNP [dm6]	G	T	4.079e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_HSA
X	4272464	X_4272464_SNP [dm3] X_4378431_SNP [dm6]	A	G	4.088e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2L	22178665	2L_22178665_SNP [dm3] 2L_22178665_SNP [dm6]	A	C	4.090e^-4	0.992	INTRON CG3635
2R	16392968	2R_16392968_SNP [dm3] 2R_20505463_SNP [dm6]	G	A	4.093e^-4	0.992	NON_SYNONYMOUS_CODING Obp57a UPSTREAM CR44645 DOWNSTREAM Obp57b & 1 other
X	1082439	X_1082439_SNP [dm3] X_1188406_SNP [dm6]	C	T	4.097e^-4	0.992	SYNONYMOUS_CODING CG14626	TF binding site mE1_TFBS_chinmo
2R	12857566	2R_12857566_SNP [dm3] 2R_16970061_SNP [dm6]	A	G	4.123e^-4	0.992	EXON CR44377
2R	7676905	2R_7676905_SNP [dm3] 2R_11789400_SNP [dm6]	G	T	4.127e^-4	0.992	NON_SYNONYMOUS_CODING Ir48c UPSTREAM ths INTRON ths	TF binding site BDTNP1_TFBS_dl
X	7883072	X_7883072_DEL [dm3] X_7989039_DEL [dm6]	ATTTTCCTA	A	4.129e^-4	0.992	INTERGENIC
X	2808326	X_2808326_SNP [dm3] X_2914293_SNP [dm6]	T	C	4.131e^-4	0.992	INTRON kirre
X	20965997	X_20965997_SNP [dm3] X_21094970_SNP [dm6]	T	C	4.138e^-4	0.992	DOWNSTREAM CG15446 INTRON stg1 & 1 other
2L	20599963	2L_20599963_SNP [dm3] 2L_20599963_SNP [dm6]	C	A	4.138e^-4	0.992	INTRON CR44909	TF binding site BDTNP1_TFBS_twi
X	11907158	X_11907158_SNP [dm3] X_12013125_SNP [dm6]	G	C	4.148e^-4	0.992	UPSTREAM CG1492 INTRON regucalcin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7681288	2R_7681288_SNP [dm3] 2R_11793783_SNP [dm6]	C	A	4.148e^-4	0.992	INTRON ths	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	7670455	2R_7670455_SNP [dm3] 2R_11782950_SNP [dm6]	C	G	4.149e^-4	0.992	INTRON ths
2L	9336726	2L_9336726_SNP [dm3] 2L_9336726_SNP [dm6]	C	T	4.163e^-4	0.992	INTRON Eaat1
2L	1602094	2L_1602094_SNP [dm3] 2L_1602094_SNP [dm6]	C	T	4.167e^-4	0.992	INTRON CG31935 & 1 other
3L	16213844	3L_16213844_SNP [dm3] 3L_16220744_SNP [dm6]	A	C	4.172e^-4	0.992	INTERGENIC
3L	16213852	3L_16213852_SNP [dm3] 3L_16220752_SNP [dm6]	C	G	4.172e^-4	0.992	INTERGENIC
2L	17881336	2L_17881336_SNP [dm3] 2L_17881336_SNP [dm6]	C	T	4.180e^-4	0.992	INTERGENIC
2R	4991408	2R_4991408_SNP [dm3] 2R_9103903_SNP [dm6]	C	T	4.180e^-4	0.992	SYNONYMOUS_CODING Vang DOWNSTREAM CG8777	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	1311618	3R_1311618_SNP [dm3] 3R_5485896_SNP [dm6]	C	A	4.190e^-4	0.992	SYNONYMOUS_CODING CG31550 DOWNSTREAM Hcs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	19920439	2L_19920439_SNP [dm3] 2L_19920439_SNP [dm6]	G	A	4.202e^-4	0.992	INTRON sick EXON CR43828
X	7865443	X_7865443_SNP [dm3] X_7971410_SNP [dm6]	G	T	4.206e^-4	0.992	INTRON sn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	16445764	3L_16445764_SNP [dm3] 3L_16452664_SNP [dm6]	T	C	4.216e^-4	0.992	UPSTREAM dsx-c73A INTRON CG33158	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	3847896	3L_3847896_SNP [dm3] 3L_3847896_SNP [dm6]	C	G	4.219e^-4	0.992	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2R	15385295	2R_15385295_SNP [dm3] 2R_19497790_SNP [dm6]	C	A	4.238e^-4	0.992	UTR_5_PRIME CG15120 UPSTREAM hpo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14479215	3L_14479215_SNP [dm3] 3L_14486115_SNP [dm6]	C	A	4.245e^-4	0.992	INTRON bbg
2L	880938	2L_880938_SNP [dm3] 2L_880938_SNP [dm6]	T	A	4.248e^-4	0.992	INTRON CG15824	TF binding site mE1_TFBS_cad
3R	6870781	3R_6870781_SNP [dm3] 3R_11045059_SNP [dm6]	A	G	4.248e^-4	0.992	INTRON CG34114
3R	23475845	3R_23475845_SNP [dm3] 3R_27650123_SNP [dm6]	T	C	4.249e^-4	0.992	DOWNSTREAM tau INTRON tau
3L	17615149	3L_17615149_SNP [dm3] 3L_17622049_SNP [dm6]	T	A	4.250e^-4	0.992	UTR_5_PRIME CG7510 UPSTREAM CG6259	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8208249	2L_8208249_SNP [dm3] 2L_8208249_SNP [dm6]	C	A	4.254e^-4	0.992	SYNONYMOUS_CODING CG8419	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	12792986	3R_12792986_SNP [dm3] 3R_16967264_SNP [dm6]	G	A	4.260e^-4	0.992	INTRON Abd-B	TF binding site mE1_TFBS_cad
2R	12460260	2R_12460260_SNP [dm3] 2R_16572755_SNP [dm6]	C	A	4.270e^-4	0.992	INTRON CG4927
3R	27393686	3R_27393686_SNP [dm3] 3R_31567964_SNP [dm6]	A	G	4.273e^-4	0.992	INTERGENIC
2L	18420319	2L_18420319_SNP [dm3] 2L_18420319_SNP [dm6]	C	T	4.275e^-4	0.992	INTERGENIC
2R	17386287	2R_17386287_SNP [dm3] 2R_21498782_SNP [dm6]	C	A	4.277e^-4	0.992	UPSTREAM Fkbp14 DOWNSTREAM TAF1C-like INTERGENIC
2R	16848348	2R_16848348_SNP [dm3] 2R_20960843_SNP [dm6]	G	T	4.283e^-4	0.992	UTR_5_PRIME hbn	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	15464671	2R_15464671_SNP [dm3] 2R_19577166_SNP [dm6]	T	C	4.284e^-4	0.992	INTRON sm
2R	5181978	2R_5181978_SNP [dm3] 2R_9294473_SNP [dm6]	T	A	4.302e^-4	0.992	UPSTREAM Drep-2 INTRON Drep-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16393908	2R_16393908_SNP [dm3] 2R_20506403_SNP [dm6]	T	A	4.304e^-4	0.992	UPSTREAM CR44644 DOWNSTREAM Obp57a EXON CR44645
3R	19803063	3R_19803063_SNP [dm3] 3R_23977341_SNP [dm6]	A	G	4.304e^-4	0.992	INTRON CG31140
3L	14514031	3L_14514031_SNP [dm3] 3L_14520931_SNP [dm6]	C	T	4.308e^-4	0.992	INTRON bbg & 1 other
3L	14716735	3L_14716735_SNP [dm3] 3L_14723635_SNP [dm6]	G	A	4.312e^-4	0.992	INTRON ome
2R	19451832	2R_19451832_SNP [dm3] 2R_23564309_SNP [dm6]	G	C	4.318e^-4	0.992	SYNONYMOUS_CODING CG30184 UPSTREAM apt DOWNSTREAM Pi3K59F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3562659	3L_3562659_SNP [dm3] 3L_3562659_SNP [dm6]	T	A	4.320e^-4	0.992	INTRON Eip63E
3L	660573	3L_660573_SNP [dm3] 3L_660573_SNP [dm6]	C	T	4.323e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9769622	X_9769622_SNP [dm3] X_9875589_SNP [dm6]	A	G	4.324e^-4	0.992	SYNONYMOUS_CODING CG15247	TF binding site mE1_TFBS_chinmo
3L	11524985	3L_11524985_SNP [dm3] 3L_11531885_SNP [dm6]	T	C	4.324e^-4	0.992	INTRON Mob2
3L	7834548	3L_7834548_SNP [dm3] 3L_7841448_SNP [dm6]	G	A	4.325e^-4	0.992	INTRON Pdp1	regulatory region REDfly_CRMs
2L	22309622	2L_22309622_SNP [dm3] 2L_22309622_SNP [dm6]	T	C	4.326e^-4	0.992	INTRON CG17018	transposable element FlyBase
3R	23287870	3R_23287870_DEL [dm3] 3R_27462148_DEL [dm6]	ATG	A	4.327e^-4	0.992	INTERGENIC
3R	2808243	3R_2808243_SNP [dm3] 3R_6982521_SNP [dm6]	A	T	4.329e^-4	0.992	INTRON Antp
2L	22181722	2L_22181722_SNP [dm3] 2L_22181722_SNP [dm6]	C	T	4.337e^-4	0.992	INTRON CG3635
3R	21315667	3R_21315667_SNP [dm3] 3R_25489945_SNP [dm6]	G	A	4.342e^-4	0.992	INTRON Dhap-at	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2171806	3L_2171806_SNP [dm3] 3L_2171806_SNP [dm6]	C	T	4.346e^-4	0.992	UPSTREAM CG5704 EXON CR15821
X	2149613	X_2149613_SNP [dm3] X_2255580_SNP [dm6]	G	C	4.346e^-4	0.992	UTR_3_PRIME CG3078	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	5822914	2R_5822914_SNP [dm3] 2R_9935409_SNP [dm6]	G	A	4.347e^-4	0.992	INTRON Mef2	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14792407	3R_14792407_SNP [dm3] 3R_18966685_SNP [dm6]	C	T	4.352e^-4	0.992	INTRON CG42613 & 1 other
2R	6978013	2R_6978013_SNP [dm3] 2R_11090508_SNP [dm6]	C	T	4.354e^-4	0.992	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	2793627	2L_2793627_SNP [dm3] 2L_2793627_SNP [dm6]	T	C	4.356e^-4	0.992	INTRON Syt1
2L	20668177	2L_20668177_SNP [dm3] 2L_20668177_SNP [dm6]	A	G	4.364e^-4	0.992	UPSTREAM CG31678 INTRON CG31678 EXON CR45004
3R	25331183	3R_25331183_SNP [dm3] 3R_29505461_SNP [dm6]	A	C	4.365e^-4	0.992	INTERGENIC
2R	15824879	2R_15824879_SNP [dm3] 2R_19937374_SNP [dm6]	G	T	4.369e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14161159	3L_14161159_SNP [dm3] 3L_14168059_SNP [dm6]	G	A	4.375e^-4	0.992	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs
3R	25358591	3R_25358591_SNP [dm3] 3R_29532869_SNP [dm6]	T	C	4.378e^-4	0.992	INTERGENIC
X	7883070	X_7883070_SNP [dm3] X_7989037_SNP [dm6]	T	G	4.381e^-4	0.992	INTERGENIC
2L	12188126	2L_12188126_SNP [dm3] 2L_12188126_SNP [dm6]	C	T	4.391e^-4	0.992	INTRON aret
3L	12585656	3L_12585656_SNP [dm3] 3L_12592556_SNP [dm6]	G	T	4.398e^-4	0.992	INTRON ara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2377093	3L_2377093_SNP [dm3] 3L_2377093_SNP [dm6]	C	G	4.409e^-4	0.992	NON_SYNONYMOUS_CODING CG15877 UPSTREAM CG45186 DOWNSTREAM CG9004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
X	21453977	X_21453977_SNP [dm3] X_21582950_SNP [dm6]	A	T	4.417e^-4	0.992	UPSTREAM CR44711 INTERGENIC
X	20365568	X_20365568_SNP [dm3] X_20494541_SNP [dm6]	A	T	4.426e^-4	0.992	INTRON RhoGAP19D
3R	26087744	3R_26087744_SNP [dm3] 3R_30262022_SNP [dm6]	C	A	4.429e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	2057231	2R_2057231_SNP [dm3] 2R_6169726_SNP [dm6]	C	G	4.437e^-4	0.992	UPSTREAM EcR DOWNSTREAM tRNA:R2:42Ab INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5530089	2L_5530089_SNP [dm3] 2L_5530089_SNP [dm6]	C	T	4.438e^-4	0.992	SYNONYMOUS_CODING CG31915 DOWNSTREAM CG7277 INTRON Cap-D3
2L	10913701	2L_10913701_SNP [dm3] 2L_10913701_SNP [dm6]	T	C	4.440e^-4	0.992	INTERGENIC
2R	18424464	2R_18424464_DEL [dm3] 2R_22536959_DEL [dm6]	TGTTATTATTGTTGTT...	T	4.441e^-4	0.992	CODON_DELETION px
3L	16213854	3L_16213854_SNP [dm3] 3L_16220754_SNP [dm6]	G	C	4.446e^-4	0.992	INTERGENIC
2R	20054927	2R_20054927_SNP [dm3] 2R_24167404_SNP [dm6]	A	G	4.450e^-4	0.992	UTR_5_PRIME CG3328 INTRON CG3328	TF binding site mE1_TFBS_chinmo
2L	10913700	2L_10913700_SNP [dm3] 2L_10913700_SNP [dm6]	G	C	4.463e^-4	0.992	INTERGENIC
X	4492314	X_4492314_SNP [dm3] X_4598281_SNP [dm6]	A	G	4.468e^-4	0.992	INTRON CR32773
X	21914568	X_21914568_SNP [dm3] X_22512732_SNP [dm6]	G	A	4.470e^-4	0.992	INTERGENIC
2R	15385321	2R_15385321_SNP [dm3] 2R_19497816_SNP [dm6]	A	G	4.481e^-4	0.992	SYNONYMOUS_CODING CG15120 UPSTREAM hpo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14810283	2R_14810283_SNP [dm3] 2R_18922778_SNP [dm6]	C	G	4.484e^-4	0.992	INTRON sano
2L	12189429	2L_12189429_SNP [dm3] 2L_12189429_SNP [dm6]	T	A	4.487e^-4	0.992	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	1523418	3L_1523418_SNP [dm3] 3L_1523418_SNP [dm6]	G	C	4.487e^-4	0.992	UTR_3_PRIME CG12090 DOWNSTREAM Psa
2L	5909038	2L_5909038_SNP [dm3] 2L_5909038_SNP [dm6]	G	A	4.509e^-4	0.992	UTR_3_PRIME CG14000 INTRON bchs
3L	10123249	3L_10123249_SNP [dm3] 3L_10130149_SNP [dm6]	C	A	4.531e^-4	0.992	INTRON dpr6
3R	25331182	3R_25331182_SNP [dm3] 3R_29505460_SNP [dm6]	A	C	4.533e^-4	0.992	INTERGENIC
3L	9808672	3L_9808672_SNP [dm3] 3L_9815572_SNP [dm6]	T	C	4.535e^-4	0.992	UPSTREAM CG43897 INTRON CG43897
3L	9578500	3L_9578500_SNP [dm3] 3L_9585400_SNP [dm6]	G	A	4.549e^-4	0.992	INTRON CG42673
2R	13966489	2R_13966489_SNP [dm3] 2R_18078984_SNP [dm6]	A	C	4.551e^-4	0.992	INTRON CG34386
X	4492194	X_4492194_SNP [dm3] X_4598161_SNP [dm6]	T	A	4.557e^-4	0.992	INTRON CR32773
2R	9421244	2R_9421244_SNP [dm3] 2R_13533739_SNP [dm6]	C	T	4.570e^-4	0.992	UPSTREAM Vmat INTRON Vmat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	3884498	2L_3884498_SNP [dm3] 2L_3884498_SNP [dm6]	G	A	4.570e^-4	0.992	NON_SYNONYMOUS_CODING capu	TF binding site mE1_TFBS_cad
3R	24175219	3R_24175219_SNP [dm3] 3R_28349497_SNP [dm6]	G	A	4.571e^-4	0.992	INTERGENIC
3R	19837430	3R_19837430_DEL [dm3] 3R_24011708_DEL [dm6]	GTAATACTTGAGTCTACATG...	G	4.571e^-4	0.992	INTRON KrT95D	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	11017980	3L_11017980_DEL [dm3] 3L_11024880_DEL [dm6]	AC	A	4.584e^-4	0.992	UPSTREAM CG32079 DOWNSTREAM Fad2 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	14590843	3L_14590843_SNP [dm3] 3L_14597743_SNP [dm6]	A	G	4.585e^-4	0.992	INTRON HGTX	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad
2L	20626557	2L_20626557_SNP [dm3] 2L_20626557_SNP [dm6]	A	T	4.586e^-4	0.992	UPSTREAM CR44909 INTERGENIC
3R	7367736	3R_7367736_SNP [dm3] 3R_11542014_SNP [dm6]	T	G	4.592e^-4	0.992	INTRON dpr4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	4373714	3R_4373714_SNP [dm3] 3R_8547992_SNP [dm6]	T	C	4.593e^-4	0.992	DOWNSTREAM CR45574 INTERGENIC
3R	23540503	3R_23540503_SNP [dm3] 3R_27714781_SNP [dm6]	A	T	4.600e^-4	0.992	INTERGENIC
2L	5259885	2L_5259885_SNP [dm3] 2L_5259885_SNP [dm6]	C	T	4.601e^-4	0.992	INTRON tkv EXON CR44744
X	2494848	X_2494848_SNP [dm3] X_2600815_SNP [dm6]	T	C	4.605e^-4	0.992	SYNONYMOUS_CODING Klp3A	TF binding site mE1_TFBS_chinmo
3R	24757517	3R_24757517_SNP [dm3] 3R_28931795_SNP [dm6]	C	T	4.607e^-4	0.992	INTRON CG14521
3R	9215634	3R_9215634_SNP [dm3] 3R_13389912_SNP [dm6]	A	C	4.609e^-4	0.992	INTRON CCHa2
2L	9197950	2L_9197950_SNP [dm3] 2L_9197950_SNP [dm6]	T	G	4.613e^-4	0.992	INTRON tai
3R	16488748	3R_16488748_INS [dm3] 3R_20663026_INS [dm6]	G	GCTGAGTAATCTGATAG...	4.618e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14415534	3L_14415534_SNP [dm3] 3L_14422434_SNP [dm6]	C	G	4.620e^-4	0.992	INTRON bbg	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	2115048	2R_2115048_SNP [dm3] 2R_6227543_SNP [dm6]	G	A	4.629e^-4	0.992	DOWNSTREAM tomboy40 INTRON bin3
2R	12283823	2R_12283823_SNP [dm3] 2R_16396318_SNP [dm6]	A	T	4.632e^-4	0.992	INTRON Sema-2b
2R	16111150	2R_16111150_SNP [dm3] 2R_20223645_SNP [dm6]	A	T	4.640e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19837159	3R_19837159_SNP [dm3] 3R_24011437_SNP [dm6]	A	G	4.644e^-4	0.992	INTRON KrT95D
3R	25555112	3R_25555112_SNP [dm3] 3R_29729390_SNP [dm6]	C	T	4.646e^-4	0.992	SYNONYMOUS_CODING Kul	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	6330172	2R_6330172_SNP [dm3] 2R_10442667_SNP [dm6]	A	G	4.654e^-4	0.992	INTRON Galphao
3R	5768684	3R_5768684_SNP [dm3] 3R_9942962_SNP [dm6]	G	A	4.658e^-4	0.992	INTRON Glut4EF
2R	2092675	2R_2092675_DEL [dm3] 2R_6205170_DEL [dm6]	TT	T	4.666e^-4	0.992	UTR_3_PRIME CG30431
3L	6346861	3L_6346861_SNP [dm3] 3L_6353761_SNP [dm6]	C	T	4.671e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	21148339	3R_21148339_SNP [dm3] 3R_25322617_SNP [dm6]	G	A	4.672e^-4	0.992	NON_SYNONYMOUS_CODING CG10562 DOWNSTREAM CHKov1
3R	9879265	3R_9879265_SNP [dm3] 3R_14053543_SNP [dm6]	T	C	4.675e^-4	0.992	INTERGENIC
2L	20620409	2L_20620409_SNP [dm3] 2L_20620409_SNP [dm6]	A	T	4.682e^-4	0.992	INTRON CR44909
3L	20429974	3L_20429974_SNP [dm3] 3L_20436874_SNP [dm6]	G	C	4.685e^-4	0.992	NON_SYNONYMOUS_CODING CG5872 UPSTREAM mRpL15	TF binding site mE1_TFBS_sens
3R	9962023	3R_9962023_DEL [dm3] 3R_14136301_DEL [dm6]	AA	A	4.685e^-4	0.992	INTERGENIC
2R	12859834	2R_12859834_SNP [dm3] 2R_16972329_SNP [dm6]	G	A	4.689e^-4	0.992	DOWNSTREAM CR44377 INTERGENIC
3R	22602667	3R_22602667_SNP [dm3] 3R_26776945_SNP [dm6]	C	T	4.690e^-4	0.992	INTERGENIC
3L	17363740	3L_17363740_SNP [dm3] 3L_17370640_SNP [dm6]	C	T	4.706e^-4	0.992	SYNONYMOUS_CODING Cad74A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5862525	2L_5862525_INS [dm3] 2L_5862525_INS [dm6]	A	AATATA	4.725e^-4	0.992	INTRON rau
2R	10887543	2R_10887543_SNP [dm3] 2R_15000038_SNP [dm6]	T	A	4.730e^-4	0.992	INTERGENIC
3R	25549512	3R_25549512_SNP [dm3] 3R_29723790_SNP [dm6]	G	T	4.735e^-4	0.992	DOWNSTREAM CG34296 & 1 other INTRON Pcd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2L	3032851	2L_3032851_SNP [dm3] 2L_3032851_SNP [dm6]	G	A	4.742e^-4	0.992	DOWNSTREAM GABPI INTRON CG17258	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
3L	8362803	3L_8362803_DEL [dm3] 3L_8369703_DEL [dm6]	TGC	T	4.743e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
3L	10386150	3L_10386150_SNP [dm3] 3L_10393050_SNP [dm6]	G	C	4.744e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2459276	3L_2459276_SNP [dm3] 3L_2459276_SNP [dm6]	G	C	4.748e^-4	0.992	INTRON CG45186
3L	14479213	3L_14479213_SNP [dm3] 3L_14486113_SNP [dm6]	A	G	4.757e^-4	0.992	INTRON bbg
X	14284503	X_14284503_SNP [dm3] X_14390470_SNP [dm6]	T	C	4.758e^-4	0.992	INTRON dpr8	TF binding site BDTNP1_TFBS_twi
2R	16064082	2R_16064082_SNP [dm3] 2R_20176577_SNP [dm6]	T	C	4.764e^-4	0.992	INTERGENIC
3L	6756801	3L_6756801_SNP [dm3] 3L_6763701_SNP [dm6]	C	A	4.766e^-4	0.992	UPSTREAM CG32392 INTERGENIC	TF binding site mE1_TFBS_bab1
X	13065565	X_13065565_SNP [dm3] X_13171532_SNP [dm6]	C	T	4.770e^-4	0.992	INTRON CG34411
3L	2169406	3L_2169406_SNP [dm3] 3L_2169406_SNP [dm6]	C	G	4.772e^-4	0.992	UPSTREAM CG15879 DOWNSTREAM CG5704 INTERGENIC
2R	17309451	2R_17309451_SNP [dm3] 2R_21421946_SNP [dm6]	C	G	4.773e^-4	0.992	INTRON Sdc
2L	19981805	2L_19981805_SNP [dm3] 2L_19981805_SNP [dm6]	A	T	4.777e^-4	0.992	INTRON CG43861
3L	6755523	3L_6755523_SNP [dm3] 3L_6762423_SNP [dm6]	T	C	4.779e^-4	0.992	INTRON CG32392
2L	20140076	2L_20140076_DEL [dm3] 2L_20140076_DEL [dm6]	TAACTGTCAAAAG...	T	4.783e^-4	0.992	INTERGENIC
2L	19920514	2L_19920514_SNP [dm3] 2L_19920514_SNP [dm6]	A	G	4.789e^-4	0.992	INTRON sick EXON CR43828
3R	5797832	3R_5797832_SNP [dm3] 3R_9972110_SNP [dm6]	G	A	4.797e^-4	0.992	INTRON Glut4EF
3R	9879311	3R_9879311_SNP [dm3] 3R_14053589_SNP [dm6]	C	T	4.804e^-4	0.992	INTERGENIC
3R	26413427	3R_26413427_SNP [dm3] 3R_30587705_SNP [dm6]	C	A	4.804e^-4	0.992	UPSTREAM CG9717 INTERGENIC
2L	1367090	2L_1367090_SNP [dm3] 2L_1367090_SNP [dm6]	G	C	4.805e^-4	0.992	UPSTREAM CG14346 INTERGENIC
X	11906910	X_11906910_SNP [dm3] X_12012877_SNP [dm6]	A	G	4.806e^-4	0.992	UPSTREAM CG1492 INTRON regucalcin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	1850664	3L_1850664_SNP [dm3] 3L_1850664_SNP [dm6]	C	T	4.816e^-4	0.992	DOWNSTREAM CG13936 INTERGENIC
2R	12708758	2R_12708758_SNP [dm3] 2R_16821253_SNP [dm6]	G	A	4.818e^-4	0.992	INTERGENIC
3R	9879308	3R_9879308_SNP [dm3] 3R_14053586_SNP [dm6]	A	T	4.834e^-4	0.992	INTERGENIC
2L	2452799	2L_2452799_SNP [dm3] 2L_2452799_SNP [dm6]	T	G	4.842e^-4	0.992	INTRON dpp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	12460300	2R_12460300_SNP [dm3] 2R_16572795_SNP [dm6]	A	C	4.844e^-4	0.992	INTRON CG4927
3L	1541044	3L_1541044_SNP [dm3] 3L_1541044_SNP [dm6]	A	C	4.857e^-4	0.992	INTRON CG7852
3L	11150098	3L_11150098_SNP [dm3] 3L_11156998_SNP [dm6]	A	T	4.859e^-4	0.992	INTRON CG32082	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21814077	2L_21814077_DEL [dm3] 2L_21814077_DEL [dm6]	ATCCGAGTCGAA...	A	4.859e^-4	0.992	INTERGENIC
3L	4081682	3L_4081682_SNP [dm3] 3L_4081682_SNP [dm6]	C	T	4.860e^-4	0.992	INTRON Gad1
2R	12283806	2R_12283806_SNP [dm3] 2R_16396301_SNP [dm6]	C	T	4.863e^-4	0.992	INTRON Sema-2b
3L	20408121	3L_20408121_SNP [dm3] 3L_20415021_SNP [dm6]	A	G	4.867e^-4	0.992	INTRON zye	TF binding site mE1_TFBS_HSA
2L	8660072	2L_8660072_SNP [dm3] 2L_8660072_SNP [dm6]	C	A	4.867e^-4	0.992	INTRON Sema-1a
3R	9623873	3R_9623873_SNP [dm3] 3R_13798151_SNP [dm6]	T	G	4.872e^-4	0.992	DOWNSTREAM tRNA:CR31331 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16760919	X_16760919_SNP [dm3] X_16866886_SNP [dm6]	G	C	4.874e^-4	0.992	INTRON CG13003
2L	20617146	2L_20617146_SNP [dm3] 2L_20617146_SNP [dm6]	A	G	4.883e^-4	0.992	DOWNSTREAM mir-133 INTRON CR44909
2L	20605299	2L_20605299_SNP [dm3] 2L_20605299_SNP [dm6]	T	C	4.885e^-4	0.992	INTRON CR44909
2L	10122900	2L_10122900_SNP [dm3] 2L_10122900_SNP [dm6]	T	C	4.889e^-4	0.992	UPSTREAM CG13135 INTRON CG44153 & 1 other
3R	26056545	3R_26056545_SNP [dm3] 3R_30230823_SNP [dm6]	G	A	4.889e^-4	0.992	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	17029949	2R_17029949_SNP [dm3] 2R_21142444_SNP [dm6]	T	A	4.898e^-4	0.992	UTR_5_PRIME CG9406 UPSTREAM Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb mE1_TFBS_sens
X	4424003	X_4424003_SNP [dm3] X_4529970_SNP [dm6]	C	G	4.901e^-4	0.992	UPSTREAM CG3556 INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2R	5181567	2R_5181567_SNP [dm3] 2R_9294062_SNP [dm6]	G	A	4.902e^-4	0.992	UPSTREAM Drep-2 INTRON Drep-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25877239	3R_25877239_SNP [dm3] 3R_30051517_SNP [dm6]	T	C	4.904e^-4	0.992	UPSTREAM CG7946 INTRON CG15528 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	19842200	2R_19842200_SNP [dm3] 2R_23954677_SNP [dm6]	C	T	4.905e^-4	0.992	SYNONYMOUS_CODING thoc5 UPSTREAM CG3803	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	10050860	X_10050860_SNP [dm3] X_10156827_SNP [dm6]	T	G	4.906e^-4	0.992	INTRON CR44894
2R	7070332	2R_7070332_SNP [dm3] 2R_11182827_SNP [dm6]	G	C	4.919e^-4	0.992	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10077349	2L_10077349_SNP [dm3] 2L_10077349_SNP [dm6]	G	T	4.926e^-4	0.992	INTRON CG44153	TF binding site mE1_TFBS_cad
3R	21988916	3R_21988916_SNP [dm3] 3R_26163194_SNP [dm6]	G	A	4.936e^-4	0.992	INTERGENIC
3R	14570333	3R_14570333_SNP [dm3] 3R_18744611_SNP [dm6]	C	T	4.937e^-4	0.992	SYNONYMOUS_CODING CG7718	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	20589039	2L_20589039_SNP [dm3] 2L_20589039_SNP [dm6]	T	A	4.948e^-4	0.992	INTRON CR44909
2L	20617160	2L_20617160_DEL [dm3] 2L_20617160_DEL [dm6]	CCATTTCAGG	A	4.948e^-4	0.992	DOWNSTREAM mir-133 INTRON CR44909
2L	20617172	2L_20617172_SNP [dm3] 2L_20617172_SNP [dm6]	G	A	4.948e^-4	0.992	DOWNSTREAM mir-133 INTRON CR44909
2L	20617175	2L_20617175_SNP [dm3] 2L_20617175_SNP [dm6]	A	T	4.948e^-4	0.992	DOWNSTREAM mir-133 INTRON CR44909
2L	20618460	2L_20618460_DEL [dm3] 2L_20618460_DEL [dm6]	CCGGCACCCGGA...	C	4.948e^-4	0.992	UPSTREAM mir-288 INTRON CR44909 EXON mir-288
3R	21622188	3R_21622188_SNP [dm3] 3R_25796466_SNP [dm6]	C	A	4.949e^-4	0.992	DOWNSTREAM CR43847 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10617582	3R_10617582_SNP [dm3] 3R_14791860_SNP [dm6]	T	C	4.953e^-4	0.992	UTR_3_PRIME jvl INTRON jvl
3R	9879294	3R_9879294_SNP [dm3] 3R_14053572_SNP [dm6]	C	T	4.954e^-4	0.992	INTERGENIC
3R	9879295	3R_9879295_SNP [dm3] 3R_14053573_SNP [dm6]	G	A	4.954e^-4	0.992	INTERGENIC
X	9246455	X_9246455_SNP [dm3] X_9352422_SNP [dm6]	G	T	4.955e^-4	0.992	INTRON CG34449	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6755914	3L_6755914_SNP [dm3] 3L_6762814_SNP [dm6]	T	A	4.967e^-4	0.992	INTRON CG32392
X	2828192	X_2828192_SNP [dm3] X_2934159_SNP [dm6]	T	A	4.979e^-4	0.992	UPSTREAM CG3592 INTRON kirre
2R	3731762	2R_3731762_SNP [dm3] 2R_7844257_SNP [dm6]	A	G	4.979e^-4	0.992	INTRON Dgk
3R	20844201	3R_20844201_SNP [dm3] 3R_25018479_SNP [dm6]	G	A	4.983e^-4	0.992	NON_SYNONYMOUS_CODING tnc
2L	17308401	2L_17308401_SNP [dm3] 2L_17308401_SNP [dm6]	C	T	4.984e^-4	0.992	INTERGENIC
2L	12781428	2L_12781428_SNP [dm3] 2L_12781428_SNP [dm6]	A	T	4.988e^-4	0.992	INTERGENIC
X	9212403	X_9212403_SNP [dm3] X_9318370_SNP [dm6]	G	A	4.994e^-4	0.992	SYNONYMOUS_CODING c12.1 UPSTREAM c12.2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	12328810	3L_12328810_SNP [dm3] 3L_12335710_SNP [dm6]	A	C	4.996e^-4	0.992	UTR_3_PRIME CG32105 UPSTREAM CG10418
3L	11540145	3L_11540145_SNP [dm3] 3L_11547045_SNP [dm6]	C	T	5.000e^-4	0.992	INTRON Mob2
3L	3277091	3L_3277091_SNP [dm3] 3L_3277091_SNP [dm6]	C	T	5.004e^-4	0.992	DOWNSTREAM CG14960 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	4081756	3L_4081756_SNP [dm3] 3L_4081756_SNP [dm6]	C	G	5.022e^-4	0.992	INTRON Gad1
3R	10800204	3R_10800204_SNP [dm3] 3R_14974482_SNP [dm6]	G	A	5.023e^-4	0.992	INTERGENIC
3L	5081724	3L_5081724_SNP [dm3] 3L_5081724_SNP [dm6]	T	A	5.025e^-4	0.992	INTERGENIC
3R	21990278	3R_21990278_SNP [dm3] 3R_26164556_SNP [dm6]	C	T	5.030e^-4	0.992	INTERGENIC
2R	14321865	2R_14321865_SNP [dm3] 2R_18434360_SNP [dm6]	C	T	5.033e^-4	0.992	INTRON CG30118
3R	13660862	3R_13660862_INS [dm3] 3R_17835140_INS [dm6]	T	TAGGT	5.040e^-4	0.992	INTRON tinc
3L	14805920	3L_14805920_SNP [dm3] 3L_14812820_SNP [dm6]	G	T	5.050e^-4	0.992	INTRON CG17839	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	4423899	X_4423899_SNP [dm3] X_4529866_SNP [dm6]	C	A	5.056e^-4	0.992	UPSTREAM CG3556 INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	9635629	2R_9635629_SNP [dm3] 2R_13748124_SNP [dm6]	C	T	5.063e^-4	0.992	UTR_3_PRIME fas
3L	14288104	3L_14288104_INS [dm3] 3L_14295004_INS [dm6]	A	AATTGAA	5.074e^-4	0.992	INTRON fz
X	13010300	X_13010300_SNP [dm3] X_13116267_SNP [dm6]	A	G	5.078e^-4	0.992	INTRON CG42237
2R	14219006	2R_14219006_SNP [dm3] 2R_18331501_SNP [dm6]	T	A	5.084e^-4	0.992	INTRON sbb
3R	14566188	3R_14566188_SNP [dm3] 3R_18740466_SNP [dm6]	C	A	5.097e^-4	0.992	UPSTREAM Mekk1 INTRON Mekk1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
3L	9582877	3L_9582877_SNP [dm3] 3L_9589777_SNP [dm6]	C	T	5.101e^-4	0.992	INTRON CG42673
2L	20591073	2L_20591073_INS [dm3] 2L_20591073_INS [dm6]	T	GAGGCCAATG	5.106e^-4	0.992	INTRON CR44909
3L	10697055	3L_10697055_SNP [dm3] 3L_10703955_SNP [dm6]	G	A	5.107e^-4	0.992	INTERGENIC
3L	18372848	3L_18372848_SNP [dm3] 3L_18379748_SNP [dm6]	A	C	5.110e^-4	0.992	INTERGENIC
2R	16126840	2R_16126840_SNP [dm3] 2R_20239335_SNP [dm6]	T	G	5.118e^-4	0.992	UPSTREAM Efhc1.2 DOWNSTREAM CG11099 INTRON CG13869
3L	590799	3L_590799_SNP [dm3] 3L_590799_SNP [dm6]	C	T	5.119e^-4	0.992	INTERGENIC
2L	10826460	2L_10826460_SNP [dm3] 2L_10826460_SNP [dm6]	A	T	5.122e^-4	0.992	INTRON Nos
X	4859927	X_4859927_SNP [dm3] X_4965894_SNP [dm6]	C	T	5.124e^-4	0.992	INTRON CR44833	regulatory region REDfly_CRMs
3L	14159640	3L_14159640_SNP [dm3] 3L_14166540_SNP [dm6]	A	G	5.128e^-4	0.992	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2166057	3L_2166057_SNP [dm3] 3L_2166057_SNP [dm6]	T	C	5.133e^-4	0.992	INTERGENIC
2L	17881304	2L_17881304_SNP [dm3] 2L_17881304_SNP [dm6]	G	A	5.142e^-4	0.992	INTERGENIC
3L	20211757	3L_20211757_SNP [dm3] 3L_20218657_SNP [dm6]	T	A	5.143e^-4	0.992	NON_SYNONYMOUS_CODING CG6933	TF binding site mE1_TFBS_cad
2L	20617176	2L_20617176_SNP [dm3] 2L_20617176_SNP [dm6]	C	A	5.150e^-4	0.992	DOWNSTREAM mir-133 INTRON CR44909
3R	21063788	3R_21063788_SNP [dm3] 3R_25238066_SNP [dm6]	C	T	5.151e^-4	0.992	SYNONYMOUS_CODING CG11852
3L	17426737	3L_17426737_SNP [dm3] 3L_17433637_SNP [dm6]	A	G	5.151e^-4	0.992	UPSTREAM CG32176 & 2 others DOWNSTREAM CG12229 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	2115116	2R_2115116_DEL [dm3] 2R_6227611_DEL [dm6]	AA	A	5.160e^-4	0.992	DOWNSTREAM tomboy40 INTRON bin3
2R	16395058	2R_16395058_INS [dm3] 2R_20507553_INS [dm6]	A	AA	5.166e^-4	0.992	UPSTREAM CR44646 DOWNSTREAM CR44645 INTERGENIC
2R	10620601	2R_10620601_SNP [dm3] 2R_14733096_SNP [dm6]	A	C	5.171e^-4	0.992	INTERGENIC
3L	14590849	3L_14590849_SNP [dm3] 3L_14597749_SNP [dm6]	T	C	5.174e^-4	0.992	INTRON HGTX	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad
2R	15239535	2R_15239535_SNP [dm3] 2R_19352030_SNP [dm6]	T	G	5.177e^-4	0.992	INTRON Rgk1
2L	3218726	2L_3218726_DEL [dm3] 2L_3218726_DEL [dm6]	TT	T	5.179e^-4	0.992	INTERGENIC
3L	593768	3L_593768_SNP [dm3] 3L_593768_SNP [dm6]	C	T	5.184e^-4	0.992	SYNONYMOUS_CODING MED14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4859928	X_4859928_SNP [dm3] X_4965895_SNP [dm6]	A	G	5.192e^-4	0.992	INTRON CR44833	regulatory region REDfly_CRMs
2R	3530152	2R_3530152_SNP [dm3] 2R_7642647_SNP [dm6]	A	C	5.197e^-4	0.992	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340
3R	25209641	3R_25209641_SNP [dm3] 3R_29383919_SNP [dm6]	A	T	5.207e^-4	0.992	INTRON Ptp99A
3L	1327317	3L_1327317_SNP [dm3] 3L_1327317_SNP [dm6]	T	C	5.215e^-4	0.992	SYNONYMOUS_CODING Myo61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	22194382	2L_22194382_SNP [dm3] 2L_22194382_SNP [dm6]	C	G	5.218e^-4	0.992	INTRON Ir40a
2R	15107203	2R_15107203_DEL [dm3] 2R_19219698_DEL [dm6]	GCATGGTGGGTCG...	G	5.219e^-4	0.992	INTRON hppy
3R	16572325	3R_16572325_SNP [dm3] 3R_20746603_SNP [dm6]	A	T	5.224e^-4	0.992	INTRON CG42322	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4871725	2L_4871725_SNP [dm3] 2L_4871725_SNP [dm6]	T	C	5.224e^-4	0.992	SYNONYMOUS_CODING pog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	18499238	X_18499238_SNP [dm3] X_18605205_SNP [dm6]	T	G	5.233e^-4	0.992	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3329237	2L_3329237_SNP [dm3] 2L_3329237_SNP [dm6]	T	C	5.234e^-4	0.992	SYNONYMOUS_CODING CG33282
4	278372	4_278372_INS [dm3] 4_257746_INS [dm6]	G	GTATGTACGTATGTACGTAC...	5.237e^-4	0.992	INTRON RhoGAP102A
X	2693432	X_2693432_SNP [dm3] X_2799399_SNP [dm6]	A	T	5.242e^-4	0.992	INTRON kirre
X	10697833	X_10697833_DEL [dm3] X_10803800_DEL [dm6]	AA	A	5.244e^-4	0.992	INTRON Imp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	2548637	2L_2548637_SNP [dm3] 2L_2548637_SNP [dm6]	A	G	5.248e^-4	0.992	INTERGENIC
2R	4657819	2R_4657819_SNP [dm3] 2R_8770314_SNP [dm6]	C	A	5.249e^-4	0.992	INTERGENIC
2R	16393763	2R_16393763_SNP [dm3] 2R_20506258_SNP [dm6]	C	A	5.261e^-4	0.992	DOWNSTREAM Obp57a EXON CR44644 & 1 other
X	10107912	X_10107912_SNP [dm3] X_10213879_SNP [dm6]	C	T	5.278e^-4	0.992	DOWNSTREAM CG2962 INTRON l_1_G0230	TF binding site mE1_TFBS_sens
3L	14580352	3L_14580352_SNP [dm3] 3L_14587252_SNP [dm6]	A	G	5.288e^-4	0.992	INTRON HGTX
2R	19660051	2R_19660051_SNP [dm3] 2R_23772528_SNP [dm6]	A	G	5.298e^-4	0.992	INTRON CG9850
2R	14269965	2R_14269965_SNP [dm3] 2R_18382460_SNP [dm6]	A	T	5.300e^-4	0.992	UPSTREAM CG43202 DOWNSTREAM IM23 INTERGENIC
3L	19374481	3L_19374481_SNP [dm3] 3L_19381381_SNP [dm6]	G	T	5.301e^-4	0.992	SYNONYMOUS_CODING CG32206
3L	9231209	3L_9231209_SNP [dm3] 3L_9238109_SNP [dm6]	T	A	5.310e^-4	0.992	INTERGENIC
2R	17762217	2R_17762217_SNP [dm3] 2R_21874712_SNP [dm6]	A	G	5.311e^-4	0.992	INTRON Fili	TF binding site mE1_TFBS_HSA
3R	12792993	3R_12792993_SNP [dm3] 3R_16967271_SNP [dm6]	G	A	5.323e^-4	0.992	INTRON Abd-B	TF binding site mE1_TFBS_cad
3L	11150092	3L_11150092_SNP [dm3] 3L_11156992_SNP [dm6]	A	C	5.325e^-4	0.992	INTRON CG32082	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7915637	X_7915637_SNP [dm3] X_8021604_SNP [dm6]	A	C	5.327e^-4	0.992	UPSTREAM CG15333 INTRON Tbh
2L	6264012	2L_6264012_SNP [dm3] 2L_6264012_SNP [dm6]	C	A	5.335e^-4	0.992	NON_SYNONYMOUS_CODING CG13983 INTRON Ddr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12707670	2R_12707670_SNP [dm3] 2R_16820165_SNP [dm6]	C	A	5.344e^-4	0.992	UPSTREAM CR43417 INTERGENIC
2L	16889724	2L_16889724_SNP [dm3] 2L_16889724_SNP [dm6]	G	C	5.346e^-4	0.992	UPSTREAM CG42556 DOWNSTREAM CR44392 INTRON tweek
2R	15974202	2R_15974202_SNP [dm3] 2R_20086697_SNP [dm6]	A	C	5.358e^-4	0.992	DOWNSTREAM CR44632 INTERGENIC
2R	5181593	2R_5181593_SNP [dm3] 2R_9294088_SNP [dm6]	A	G	5.362e^-4	0.992	UPSTREAM Drep-2 INTRON Drep-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	20632859	2L_20632859_SNP [dm3] 2L_20632859_SNP [dm6]	G	T	5.366e^-4	0.992	INTERGENIC
X	21440472	X_21440472_SNP [dm3] X_21569445_SNP [dm6]	G	C	5.370e^-4	0.992	INTERGENIC
3L	14662987	3L_14662987_SNP [dm3] 3L_14669887_SNP [dm6]	C	T	5.377e^-4	0.992	INTRON dlp
3L	14251246	3L_14251246_SNP [dm3] 3L_14258146_SNP [dm6]	G	A	5.380e^-4	0.992	INTERGENIC
X	18506210	X_18506210_SNP [dm3] X_18612177_SNP [dm6]	G	A	5.382e^-4	0.992	NON_SYNONYMOUS_CODING CG15040	TF binding site mE1_TFBS_chinmo
3L	3792946	3L_3792946_SNP [dm3] 3L_3792946_SNP [dm6]	T	C	5.384e^-4	0.992	INTRON CG32264
2R	19553786	2R_19553786_SNP [dm3] 2R_23666263_SNP [dm6]	T	G	5.388e^-4	0.992	UPSTREAM Pde8 INTRON Pde8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	7595494	2L_7595494_SNP [dm3] 2L_7595494_SNP [dm6]	G	A	5.399e^-4	0.992	INTERGENIC
2L	18647734	2L_18647734_SNP [dm3] 2L_18647734_SNP [dm6]	T	G	5.400e^-4	0.992	INTRON MESR3

By genomic position
Variant impact
Gene name

Lifespan_Caffeine phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results