DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.090e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2768 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	23765906	3L_23765906_SNP [dm3] 3L_23772806_SNP [dm6]	C	A	3.039e^-8	0.057	INTERGENIC
2R	10628938	2R_10628938_SNP [dm3] 2R_14741433_SNP [dm6]	C	A	1.063e^-7	0.091	INTRON CG12858	TF binding site mE1_TFBS_cad
3L	9132740	3L_9132740_SNP [dm3] 3L_9139640_SNP [dm6]	G	A	1.467e^-7	0.091	INTRON nwk
3L	23438518	3L_23438518_SNP [dm3] 3L_23445418_SNP [dm6]	A	C	2.593e^-7	0.091	INTERGENIC
3L	23446863	3L_23446863_SNP [dm3] 3L_23453763_SNP [dm6]	G	C	2.944e^-7	0.091	INTERGENIC	transposable element FlyBase
3L	23689575	3L_23689575_SNP [dm3] 3L_23696475_SNP [dm6]	G	A	4.116e^-7	0.091	INTERGENIC	transposable element FlyBase
3L	23315613	3L_23315613_SNP [dm3] 3L_23322513_SNP [dm6]	G	A	4.145e^-7	0.091	INTRON alpha-Cat	transposable element FlyBase
3L	23689730	3L_23689730_SNP [dm3] 3L_23696630_SNP [dm6]	C	A	4.386e^-7	0.091	INTERGENIC	transposable element FlyBase
3L	23323540	3L_23323540_SNP [dm3] 3L_23330440_SNP [dm6]	G	C	4.387e^-7	0.091	INTRON alpha-Cat
3L	23395554	3L_23395554_DEL [dm3] 3L_23402454_DEL [dm6]	TGGCGAGCAGCAT...	T	5.300e^-7	0.099	INTERGENIC
3L	23455475	3L_23455475_DEL [dm3] 3L_23462375_DEL [dm6]	TT	T	6.937e^-7	0.107	INTERGENIC	transposable element FlyBase
3L	23322902	3L_23322902_SNP [dm3] 3L_23329802_SNP [dm6]	T	A	7.356e^-7	0.107	UTR_3_PRIME alpha-Cat INTRON alpha-Cat	transposable element FlyBase
3L	14327309	3L_14327309_SNP [dm3] 3L_14334209_SNP [dm6]	G	A	7.442e^-7	0.107	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	23326140	3L_23326140_DEL [dm3] 3L_23333040_DEL [dm6]	GAGTATGG	G	8.472e^-7	0.114	INTRON alpha-Cat	transposable element FlyBase
3L	23583808	3L_23583808_SNP [dm3] 3L_23590708_SNP [dm6]	C	T	9.361e^-7	0.117	INTRON AGO3
3L	23561494	3L_23561494_SNP [dm3] 3L_23568394_SNP [dm6]	G	A	1.321e^-6	0.127	INTRON AGO3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	23335266	3L_23335266_SNP [dm3] 3L_23342166_SNP [dm6]	C	A	1.346e^-6	0.127	DOWNSTREAM CG32230 INTRON CG32230
3L	23476346	3L_23476346_SNP [dm3] 3L_23483246_SNP [dm6]	T	A	1.408e^-6	0.127	INTERGENIC	transposable element FlyBase
3L	23780916	3L_23780916_SNP [dm3] 3L_23787816_SNP [dm6]	A	G	1.453e^-6	0.127	DOWNSTREAM CG43968 INTERGENIC	transposable element FlyBase
3L	23272530	3L_23272530_SNP [dm3] 3L_23279430_SNP [dm6]	T	G	1.468e^-6	0.127	INTRON nAChRalpha4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd transposable element FlyBase
3L	23390194	3L_23390194_SNP [dm3] 3L_23397094_SNP [dm6]	A	G	1.487e^-6	0.127	INTERGENIC	transposable element FlyBase
3L	23388036	3L_23388036_SNP [dm3] 3L_23394936_SNP [dm6]	A	T	1.537e^-6	0.127	INTERGENIC
3L	23497091	3L_23497091_SNP [dm3] 3L_23503991_SNP [dm6]	T	G	1.559e^-6	0.127	INTERGENIC
3L	23583809	3L_23583809_SNP [dm3] 3L_23590709_SNP [dm6]	C	A	1.880e^-6	0.132	INTRON AGO3
3L	23447453	3L_23447453_SNP [dm3] 3L_23454353_SNP [dm6]	C	G	1.881e^-6	0.132	INTERGENIC
3L	23329671	3L_23329671_SNP [dm3] 3L_23336571_SNP [dm6]	G	A	1.887e^-6	0.132	INTRON alpha-Cat	transposable element FlyBase
3L	23507917	3L_23507917_SNP [dm3] 3L_23514817_SNP [dm6]	T	G	1.900e^-6	0.132	INTERGENIC	transposable element FlyBase
3L	23323732	3L_23323732_SNP [dm3] 3L_23330632_SNP [dm6]	C	A	2.041e^-6	0.137	INTRON alpha-Cat
3L	23420943	3L_23420943_SNP [dm3] 3L_23427843_SNP [dm6]	A	C	2.171e^-6	0.14	INTERGENIC
3L	23762071	3L_23762071_SNP [dm3] 3L_23768971_SNP [dm6]	T	C	2.299e^-6	0.14	INTERGENIC	TF binding site mE1_TFBS_inv
3L	23603692	3L_23603692_DEL [dm3] 3L_23610592_DEL [dm6]	TA	G	2.310e^-6	0.14	INTRON AGO3	transposable element FlyBase
3L	15391687	3L_15391687_SNP [dm3] 3L_15398587_SNP [dm6]	A	T	2.584e^-6	0.141	INTERGENIC
3L	23449858	3L_23449858_SNP [dm3] 3L_23456758_SNP [dm6]	C	A	2.630e^-6	0.141	INTERGENIC
3L	23574910	3L_23574910_SNP [dm3] 3L_23581810_SNP [dm6]	C	A	2.647e^-6	0.141	INTRON AGO3	transposable element FlyBase
3L	23761760	3L_23761760_DEL [dm3] 3L_23768660_DEL [dm6]	TT	T	2.756e^-6	0.141	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9132739	3L_9132739_SNP [dm3] 3L_9139639_SNP [dm6]	T	C	2.765e^-6	0.141	INTRON nwk
3L	23387786	3L_23387786_SNP [dm3] 3L_23394686_SNP [dm6]	A	T	2.816e^-6	0.141	INTERGENIC
3L	9132751	3L_9132751_INS [dm3] 3L_9139651_INS [dm6]	A	ACTGTCCAGTTTTA...	2.898e^-6	0.141	INTRON nwk
3L	23306706	3L_23306706_SNP [dm3] 3L_23313606_SNP [dm6]	C	A	2.941e^-6	0.141	INTERGENIC	transposable element FlyBase
3L	23584397	3L_23584397_SNP [dm3] 3L_23591297_SNP [dm6]	C	T	3.184e^-6	0.148	INTRON AGO3
3L	9132734	3L_9132734_DEL [dm3] 3L_9139634_DEL [dm6]	GG	G	3.230e^-6	0.148	INTRON nwk
2R	14821695	2R_14821695_SNP [dm3] 2R_18934190_SNP [dm6]	T	A	3.463e^-6	0.152	INTRON sano
3L	23643378	3L_23643378_SNP [dm3] 3L_23650278_SNP [dm6]	G	A	3.475e^-6	0.152	DOWNSTREAM AGO3 INTRON AGO3
2L	9850005	2L_9850005_DEL [dm3] 2L_9850005_DEL [dm6]	GAGTACGTGTGCA...	T	3.877e^-6	0.165	INTRON nAChRalpha6
2R	16307786	2R_16307786_SNP [dm3] 2R_20420281_SNP [dm6]	C	T	4.344e^-6	0.173	INTERGENIC
3R	9840450	3R_9840450_SNP [dm3] 3R_14014728_SNP [dm6]	A	C	4.369e^-6	0.173	INTRON rdx	TF binding site BDTNP1_TFBS_dl
3L	23326727	3L_23326727_SNP [dm3] 3L_23333627_SNP [dm6]	C	G	4.405e^-6	0.173	INTRON alpha-Cat	transposable element FlyBase
3L	23394468	3L_23394468_SNP [dm3] 3L_23401368_SNP [dm6]	C	T	4.428e^-6	0.173	INTERGENIC
3R	5224594	3R_5224594_SNP [dm3] 3R_9398872_SNP [dm6]	C	A	4.550e^-6	0.174	NON_SYNONYMOUS_CODING Or85f DOWNSTREAM CG34117	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_sens
3L	23627874	3L_23627874_SNP [dm3] 3L_23634774_SNP [dm6]	G	C	5.331e^-6	0.2	INTRON AGO3
3L	9132732	3L_9132732_SNP [dm3] 3L_9139632_SNP [dm6]	A	T	5.534e^-6	0.202	INTRON nwk
2R	17614527	2R_17614527_SNP [dm3] 2R_21727022_SNP [dm6]	C	T	5.596e^-6	0.202	DOWNSTREAM CR44750 INTERGENIC	transposable element FlyBase
3L	23438911	3L_23438911_SNP [dm3] 3L_23445811_SNP [dm6]	A	T	5.982e^-6	0.21	INTERGENIC
3L	16754647	3L_16754647_SNP [dm3] 3L_16761547_SNP [dm6]	T	A	6.057e^-6	0.21	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	23682327	3L_23682327_SNP [dm3] 3L_23689227_SNP [dm6]	C	T	7.087e^-6	0.242	INTRON AGO3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
3R	22614850	3R_22614850_SNP [dm3] 3R_26789128_SNP [dm6]	T	C	8.124e^-6	0.27	INTERGENIC
3L	12379676	3L_12379676_SNP [dm3] 3L_12386576_SNP [dm6]	G	T	8.199e^-6	0.27	INTRON Ncc69	TF binding site mE1_TFBS_cnc
3R	8384777	3R_8384777_SNP [dm3] 3R_12559055_SNP [dm6]	G	A	8.630e^-6	0.279	INTRON Octbeta2R
3L	23315019	3L_23315019_SNP [dm3] 3L_23321919_SNP [dm6]	A	T	9.012e^-6	0.284	INTRON alpha-Cat	transposable element FlyBase
3L	16273221	3L_16273221_DEL [dm3] 3L_16280121_DEL [dm6]	ACAAAAGCAACCAACCAACC...	A	9.134e^-6	0.284	UPSTREAM CG13050 & 1 other DOWNSTREAM CG13049 INTERGENIC
3L	23506892	3L_23506892_SNP [dm3] 3L_23513792_SNP [dm6]	T	G	9.323e^-6	0.284	INTERGENIC	transposable element FlyBase
3L	8009720	3L_8009720_SNP [dm3] 3L_8016620_SNP [dm6]	T	C	9.500e^-6	0.284	INTRON nmo
X	8744941	X_8744941_INS [dm3] X_8850908_INS [dm6]	G	GCTG	9.671e^-6	0.284	INTRON CG12075
2R	18947334	2R_18947334_SNP [dm3] 2R_23059811_SNP [dm6]	G	A	9.674e^-6	0.284	SYNONYMOUS_CODING CG44252	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16433604	2L_16433604_SNP [dm3] 2L_16433604_SNP [dm6]	T	C	9.868e^-6	0.285	INTRON CG5888
3R	25543006	3R_25543006_SNP [dm3] 3R_29717284_SNP [dm6]	A	G	1.011e^-5	0.287	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	11776362	3L_11776362_SNP [dm3] 3L_11783262_SNP [dm6]	G	A	1.047e^-5	0.289	SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7930430	3L_7930430_SNP [dm3] 3L_7937330_SNP [dm6]	T	C	1.048e^-5	0.289	DOWNSTREAM Srp9 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	11556293	3R_11556293_SNP [dm3] 3R_15730571_SNP [dm6]	T	C	1.073e^-5	0.292	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10628914	2R_10628914_SNP [dm3] 2R_14741409_SNP [dm6]	C	A	1.095e^-5	0.293	INTRON CG12858	TF binding site mE1_TFBS_cad
3R	25542987	3R_25542987_SNP [dm3] 3R_29717265_SNP [dm6]	G	T	1.199e^-5	0.31	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	10846523	3L_10846523_SNP [dm3] 3L_10853423_SNP [dm6]	T	G	1.218e^-5	0.31	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	13091040	3R_13091040_SNP [dm3] 3R_17265318_SNP [dm6]	A	C	1.221e^-5	0.31	UTR_5_PRIME CG44257 UPSTREAM beat-IIb
3R	1903057	3R_1903057_SNP [dm3] 3R_6077335_SNP [dm6]	G	A	1.231e^-5	0.31	INTRON Or83c
3L	8717237	3L_8717237_SNP [dm3] 3L_8724137_SNP [dm6]	C	A	1.238e^-5	0.31	SPLICE_SITE_REGION CG6511 INTRON CG6511
3L	23395672	3L_23395672_SNP [dm3] 3L_23402572_SNP [dm6]	G	T	1.276e^-5	0.313	INTERGENIC
2R	9412047	2R_9412047_SNP [dm3] 2R_13524542_SNP [dm6]	A	G	1.286e^-5	0.313	UPSTREAM CG13332 INTRON Vmat
3L	9497778	3L_9497778_SNP [dm3] 3L_9504678_SNP [dm6]	C	A	1.320e^-5	0.314	INTRON path	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	24915856	3R_24915856_SNP [dm3] 3R_29090134_SNP [dm6]	T	A	1.366e^-5	0.314	INTRON CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	12337546	3L_12337546_SNP [dm3] 3L_12344446_SNP [dm6]	G	A	1.375e^-5	0.314	INTRON CrzR
3L	23447367	3L_23447367_SNP [dm3] 3L_23454267_SNP [dm6]	G	A	1.389e^-5	0.314	INTERGENIC
3R	16619663	3R_16619663_SNP [dm3] 3R_20793941_SNP [dm6]	T	C	1.391e^-5	0.314	INTRON Syp
3R	11293036	3R_11293036_SNP [dm3] 3R_15467314_SNP [dm6]	C	T	1.398e^-5	0.314	INTRON AdamTS-A
X	13271134	X_13271134_INS [dm3] X_13377101_INS [dm6]	G	GG	1.420e^-5	0.314	INTRON CG1640
3L	23280494	3L_23280494_SNP [dm3] 3L_23287394_SNP [dm6]	A	T	1.452e^-5	0.314	UTR_3_PRIME nAChRalpha4
3L	11776718	3L_11776718_SNP [dm3] 3L_11783618_SNP [dm6]	T	C	1.479e^-5	0.314	SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	23805246	3L_23805246_SNP [dm3] 3L_23812146_SNP [dm6]	A	T	1.485e^-5	0.314	INTERGENIC	transposable element FlyBase
3R	25542990	3R_25542990_SNP [dm3] 3R_29717268_SNP [dm6]	A	T	1.493e^-5	0.314	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	16433603	2L_16433603_SNP [dm3] 2L_16433603_SNP [dm6]	C	T	1.511e^-5	0.314	INTRON CG5888
X	13271127	X_13271127_SNP [dm3] X_13377094_SNP [dm6]	C	G	1.513e^-5	0.314	INTRON CG1640
2R	18946854	2R_18946854_SNP [dm3] 2R_23059331_SNP [dm6]	T	C	1.524e^-5	0.314	DOWNSTREAM CG44253 INTRON CG44252
3R	25542992	3R_25542992_SNP [dm3] 3R_29717270_SNP [dm6]	C	T	1.545e^-5	0.314	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	25543060	3R_25543060_SNP [dm3] 3R_29717338_SNP [dm6]	C	A	1.558e^-5	0.314	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	23199167	3L_23199167_SNP [dm3] 3L_23206067_SNP [dm6]	T	C	1.632e^-5	0.326	UPSTREAM nAChRalpha4 INTERGENIC	transposable element FlyBase
2L	4928671	2L_4928671_SNP [dm3] 2L_4928671_SNP [dm6]	C	T	1.678e^-5	0.331	UPSTREAM hoe1 INTRON hoe1
3R	25313918	3R_25313918_SNP [dm3] 3R_29488196_SNP [dm6]	T	A	1.711e^-5	0.333	SYNONYMOUS_CODING CG2321	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	23865459	3L_23865459_SNP [dm3] 3L_23872359_SNP [dm6]	G	C	1.723e^-5	0.333	INTRON CG40470
3L	23657333	3L_23657333_DEL [dm3] 3L_23664233_DEL [dm6]	TGGGCTTT	T	1.773e^-5	0.336	INTRON AGO3	transposable element FlyBase
3L	22044615	3L_22044615_SNP [dm3] 3L_22051515_SNP [dm6]	C	T	1.774e^-5	0.336	INTRON Oct-TyrR
3L	20955927	3L_20955927_SNP [dm3] 3L_20962827_SNP [dm6]	G	C	1.847e^-5	0.346	UTR_3_PRIME CG12983 UPSTREAM CG10587	TF binding site BDTNP1_TFBS_prd mE1_TFBS_sens
3R	23224552	3R_23224552_SNP [dm3] 3R_27398830_SNP [dm6]	T	A	1.861e^-5	0.346	INTRON side
3L	9132767	3L_9132767_SNP [dm3] 3L_9139667_SNP [dm6]	T	C	1.919e^-5	0.353	INTRON nwk
3L	22047001	3L_22047001_SNP [dm3] 3L_22053901_SNP [dm6]	T	C	1.972e^-5	0.359	INTRON Oct-TyrR
2L	6281762	2L_6281762_SNP [dm3] 2L_6281762_SNP [dm6]	C	T	2.054e^-5	0.37	INTRON Ddr
3L	23838485	3L_23838485_SNP [dm3] 3L_23845385_SNP [dm6]	C	T	2.086e^-5	0.372	INTRON CG40470
3L	23573451	3L_23573451_DEL [dm3] 3L_23580351_DEL [dm6]	TCTT	T	2.127e^-5	0.372	INTRON AGO3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	24500144	3L_24500144_SNP [dm3] 3L_24507044_SNP [dm6]	A	C	2.134e^-5	0.372	INTERGENIC
3L	23732960	3L_23732960_SNP [dm3] 3L_23739860_SNP [dm6]	A	T	2.144e^-5	0.372	INTRON CG17698
X	8911823	X_8911823_SNP [dm3] X_9017790_SNP [dm6]	T	A	2.170e^-5	0.372	INTRON CR43836 & 1 other
3L	16751207	3L_16751207_SNP [dm3] 3L_16758107_SNP [dm6]	T	A	2.179e^-5	0.372	INTERGENIC
3R	25543001	3R_25543001_SNP [dm3] 3R_29717279_SNP [dm6]	G	C	2.234e^-5	0.377	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	5180694	X_5180694_SNP [dm3] X_5286661_SNP [dm6]	A	G	2.266e^-5	0.377	INTERGENIC
2R	18957314	2R_18957314_SNP [dm3] 2R_23069791_SNP [dm6]	A	T	2.291e^-5	0.377	UPSTREAM l_2_k09913 INTRON l_2_k09913	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	8691546	3R_8691546_SNP [dm3] 3R_12865824_SNP [dm6]	T	A	2.298e^-5	0.377	INTERGENIC
3L	9133491	3L_9133491_SNP [dm3] 3L_9140391_SNP [dm6]	A	T	2.313e^-5	0.377	NON_SYNONYMOUS_CODING nwk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3922024	3L_3922024_SNP [dm3] 3L_3922024_SNP [dm6]	A	T	2.358e^-5	0.378	INTRON Eip63F-1
3L	11219580	3L_11219580_SNP [dm3] 3L_11226480_SNP [dm6]	T	C	2.383e^-5	0.378	SYNONYMOUS_CODING CG42671	TF binding site mE1_TFBS_cad
2R	9849817	2R_9849817_SNP [dm3] 2R_13962312_SNP [dm6]	C	T	2.406e^-5	0.378	SYNONYMOUS_CODING Cp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18947448	2R_18947448_SNP [dm3] 2R_23059925_SNP [dm6]	C	T	2.445e^-5	0.378	SYNONYMOUS_CODING CG44252	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12848201	3L_12848201_SNP [dm3] 3L_12855101_SNP [dm6]	G	A	2.500e^-5	0.378	INTRON Ent3
2R	10004638	2R_10004638_SNP [dm3] 2R_14117133_SNP [dm6]	G	T	2.548e^-5	0.378	INTRON Prosap
X	4656298	X_4656298_SNP [dm3] X_4762265_SNP [dm6]	A	T	2.559e^-5	0.378	INTERGENIC
3L	12689471	3L_12689471_SNP [dm3] 3L_12696371_SNP [dm6]	T	A	2.563e^-5	0.378	INTRON mirr	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	24254519	3R_24254519_INS [dm3] 3R_28428797_INS [dm6]	G	GGTATG	2.571e^-5	0.378	INTRON beat-VI
2L	10639556	2L_10639556_DEL [dm3] 2L_10639556_DEL [dm6]	AA	A	2.580e^-5	0.378	UPSTREAM CG31872 EXON CR45351
X	17219926	X_17219926_SNP [dm3] X_17325893_SNP [dm6]	G	T	2.605e^-5	0.378	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	8897175	3L_8897175_SNP [dm3] 3L_8904075_SNP [dm6]	A	T	2.615e^-5	0.378	DOWNSTREAM tRNA:T:Psi INTRON TrpA1
X	8679104	X_8679104_SNP [dm3] X_8785071_SNP [dm6]	A	G	2.649e^-5	0.378	INTRON Lim1
3L	23848114	3L_23848114_SNP [dm3] 3L_23855014_SNP [dm6]	G	C	2.668e^-5	0.378	INTRON CG40470
3L	11776384	3L_11776384_SNP [dm3] 3L_11783284_SNP [dm6]	G	A	2.681e^-5	0.378	SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	9133471	3L_9133471_SNP [dm3] 3L_9140371_SNP [dm6]	G	A	2.687e^-5	0.378	SYNONYMOUS_CODING nwk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14821682	2R_14821682_SNP [dm3] 2R_18934177_SNP [dm6]	A	T	2.692e^-5	0.378	INTRON sano
2R	10628924	2R_10628924_DEL [dm3] 2R_14741419_DEL [dm6]	TAAT	T	2.711e^-5	0.378	INTRON CG12858	TF binding site mE1_TFBS_cad
2R	16935169	2R_16935169_SNP [dm3] 2R_21047664_SNP [dm6]	C	T	2.730e^-5	0.378	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	17311370	2R_17311370_SNP [dm3] 2R_21423865_SNP [dm6]	C	T	2.738e^-5	0.378	INTRON Sdc
3L	13377222	3L_13377222_INS [dm3] 3L_13384122_INS [dm6]	A	AAT	2.739e^-5	0.378	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
2L	4453888	2L_4453888_SNP [dm3] 2L_4453888_SNP [dm6]	C	A	2.775e^-5	0.38	SYNONYMOUS_CODING CG15440 UPSTREAM CG15439 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1598483	2L_1598483_SNP [dm3] 2L_1598483_SNP [dm6]	T	G	2.819e^-5	0.381	INTRON haf & 1 other
X	13307201	X_13307201_SNP [dm3] X_13413168_SNP [dm6]	C	T	2.820e^-5	0.381	UPSTREAM Set2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11520016	3L_11520016_SNP [dm3] 3L_11526916_SNP [dm6]	C	T	2.859e^-5	0.381	INTRON Mob2	TF binding site mE1_TFBS_HSA
2L	14039815	2L_14039815_SNP [dm3] 2L_14039815_SNP [dm6]	C	T	2.867e^-5	0.381	UPSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	18938482	2R_18938482_INS [dm3] 2R_23050959_INS [dm6]	A	AA	2.942e^-5	0.389	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6281768	2L_6281768_SNP [dm3] 2L_6281768_SNP [dm6]	G	A	2.975e^-5	0.39	INTRON Ddr
3L	9132742	3L_9132742_SNP [dm3] 3L_9139642_SNP [dm6]	T	C	3.053e^-5	0.395	INTRON nwk
3R	13124108	3R_13124108_SNP [dm3] 3R_17298386_SNP [dm6]	T	C	3.066e^-5	0.395	INTERGENIC
X	19043718	X_19043718_SNP [dm3] X_19149685_SNP [dm6]	G	A	3.082e^-5	0.395	INTRON RhoGAP18B
2R	18955693	2R_18955693_SNP [dm3] 2R_23068170_SNP [dm6]	A	T	3.120e^-5	0.395	DOWNSTREAM PPO3 INTRON l_2_k09913	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17223620	3R_17223620_SNP [dm3] 3R_21397898_SNP [dm6]	G	T	3.204e^-5	0.395	SYNONYMOUS_CODING CG6475
3L	12307203	3L_12307203_SNP [dm3] 3L_12314103_SNP [dm6]	C	G	3.227e^-5	0.395	INTERGENIC	regulatory region REDfly_CRMs
3L	12337618	3L_12337618_SNP [dm3] 3L_12344518_SNP [dm6]	G	A	3.237e^-5	0.395	INTRON CrzR
3L	7823465	3L_7823465_SNP [dm3] 3L_7830365_SNP [dm6]	T	C	3.282e^-5	0.395	INTRON Pdp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17230634	X_17230634_SNP [dm3] X_17336601_SNP [dm6]	C	T	3.286e^-5	0.395	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22149802	X_22149802_SNP [dm3] X_22747966_SNP [dm6]	C	T	3.325e^-5	0.395	INTRON CR44997
3L	23860822	3L_23860822_SNP [dm3] 3L_23867722_SNP [dm6]	C	G	3.340e^-5	0.395	INTRON CG40470	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	13278712	3R_13278712_SNP [dm3] 3R_17452990_SNP [dm6]	T	G	3.350e^-5	0.395	INTERGENIC
3R	9271115	3R_9271115_SNP [dm3] 3R_13445393_SNP [dm6]	A	G	3.357e^-5	0.395	INTERGENIC
2R	19004045	2R_19004045_SNP [dm3] 2R_23116522_SNP [dm6]	T	C	3.359e^-5	0.395	INTERGENIC
3R	8691523	3R_8691523_INS [dm3] 3R_12865801_INS [dm6]	T	TT	3.370e^-5	0.395	INTERGENIC
3R	13372488	3R_13372488_SNP [dm3] 3R_17546766_SNP [dm6]	C	T	3.383e^-5	0.395	UPSTREAM Prx3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7548688	3L_7548688_SNP [dm3] 3L_7555588_SNP [dm6]	T	C	3.395e^-5	0.395	DOWNSTREAM CG14837 INTERGENIC
3L	11776390	3L_11776390_SNP [dm3] 3L_11783290_SNP [dm6]	C	A	3.410e^-5	0.395	SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	23929115	3L_23929115_SNP [dm3] 3L_23936015_SNP [dm6]	G	T	3.413e^-5	0.395	INTRON CG40470
2L	10639633	2L_10639633_SNP [dm3] 2L_10639633_SNP [dm6]	T	A	3.438e^-5	0.395	UPSTREAM CG31872 DOWNSTREAM CR45351 INTERGENIC
3L	6307099	3L_6307099_SNP [dm3] 3L_6313999_SNP [dm6]	C	T	3.456e^-5	0.395	INTERGENIC
3L	23247520	3L_23247520_SNP [dm3] 3L_23254420_SNP [dm6]	T	C	3.502e^-5	0.398	INTRON nAChRalpha4	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	23811755	3L_23811755_SNP [dm3] 3L_23818655_SNP [dm6]	T	A	3.539e^-5	0.4	INTERGENIC	transposable element FlyBase
3L	23816843	3L_23816843_SNP [dm3] 3L_23823743_SNP [dm6]	A	T	3.643e^-5	0.405	INTERGENIC	transposable element FlyBase
3L	23837677	3L_23837677_SNP [dm3] 3L_23844577_SNP [dm6]	G	C	3.648e^-5	0.405	INTRON CG40470
2L	18467137	2L_18467137_SNP [dm3] 2L_18467137_SNP [dm6]	C	G	3.687e^-5	0.405	INTRON let-7-C
X	16158541	X_16158541_SNP [dm3] X_16264508_SNP [dm6]	C	A	3.693e^-5	0.405	DOWNSTREAM CG12507 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	1891889	3R_1891889_SNP [dm3] 3R_6066167_SNP [dm6]	T	C	3.709e^-5	0.405	INTERGENIC
3L	23437579	3L_23437579_DEL [dm3] 3L_23444479_DEL [dm6]	CCTTCA	C	3.718e^-5	0.405	INTERGENIC	transposable element FlyBase
3L	13377103	3L_13377103_DEL [dm3] 3L_13384003_DEL [dm6]	AA	A	3.746e^-5	0.406	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
X	13181881	X_13181881_SNP [dm3] X_13287848_SNP [dm6]	G	T	3.762e^-5	0.406	UPSTREAM CG15744 DOWNSTREAM CG15743 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	9110738	X_9110738_SNP [dm3] X_9216705_SNP [dm6]	G	A	3.787e^-5	0.406	UPSTREAM CG15369 DOWNSTREAM CG15368 & 1 other INTERGENIC
2R	17614529	2R_17614529_SNP [dm3] 2R_21727024_SNP [dm6]	C	A	3.878e^-5	0.407	DOWNSTREAM CR44750 INTERGENIC	transposable element FlyBase
3R	17448347	3R_17448347_SNP [dm3] 3R_21622625_SNP [dm6]	A	G	3.933e^-5	0.407	UPSTREAM mir-998 & 1 other INTRON E2f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11285050	3R_11285050_SNP [dm3] 3R_15459328_SNP [dm6]	C	G	3.947e^-5	0.407	INTRON AdamTS-A
3L	24511010	3L_24511010_SNP [dm3] 3L_24517910_SNP [dm6]	C	A	3.950e^-5	0.407	INTERGENIC
3L	23834971	3L_23834971_SNP [dm3] 3L_23841871_SNP [dm6]	T	C	3.952e^-5	0.407	INTRON CG40470
3L	23709524	3L_23709524_SNP [dm3] 3L_23716424_SNP [dm6]	G	A	3.965e^-5	0.407	SYNONYMOUS_CODING CG17454
2L	4928578	2L_4928578_SNP [dm3] 2L_4928578_SNP [dm6]	C	T	3.970e^-5	0.407	UPSTREAM hoe1 INTRON hoe1
3R	26107914	3R_26107914_SNP [dm3] 3R_30282192_SNP [dm6]	A	T	3.974e^-5	0.407	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11188377	3L_11188377_INS [dm3] 3L_11195277_INS [dm6]	T	TT	4.028e^-5	0.41	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
3R	17144938	3R_17144938_SNP [dm3] 3R_21319216_SNP [dm6]	C	T	4.045e^-5	0.41	UTR_3_PRIME CG16791	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	12847102	3L_12847102_SNP [dm3] 3L_12854002_SNP [dm6]	T	A	4.069e^-5	0.41	UTR_5_PRIME Ent3 DOWNSTREAM Wbp2
3L	24112961	3L_24112961_SNP [dm3] 3L_24119861_SNP [dm6]	G	A	4.096e^-5	0.411	INTRON Snap25
3L	24273577	3L_24273577_INS [dm3] 3L_24280477_INS [dm6]	T	TT	4.168e^-5	0.411	INTRON Snap25
3L	23478417	3L_23478417_SNP [dm3] 3L_23485317_SNP [dm6]	G	A	4.180e^-5	0.411	INTERGENIC	transposable element FlyBase
3L	10846657	3L_10846657_SNP [dm3] 3L_10853557_SNP [dm6]	G	A	4.180e^-5	0.411	INTERGENIC	TF binding site mE1_TFBS_cad
3L	23238802	3L_23238802_SNP [dm3] 3L_23245702_SNP [dm6]	C	T	4.199e^-5	0.411	INTRON nAChRalpha4	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_zfh1
X	4125981	X_4125981_DEL [dm3] X_4231948_DEL [dm6]	TAAACTT	T	4.218e^-5	0.411	INTERGENIC
3L	23205998	3L_23205998_SNP [dm3] 3L_23212898_SNP [dm6]	A	C	4.230e^-5	0.411	INTRON nAChRalpha4	transposable element FlyBase
2R	10941247	2R_10941247_SNP [dm3] 2R_15053742_SNP [dm6]	C	T	4.290e^-5	0.415	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17364796	X_17364796_SNP [dm3] X_17470763_SNP [dm6]	A	T	4.336e^-5	0.416	INTRON CG43658
2R	17614524	2R_17614524_SNP [dm3] 2R_21727019_SNP [dm6]	T	A	4.370e^-5	0.416	DOWNSTREAM CR44750 INTERGENIC	transposable element FlyBase
2R	18976001	2R_18976001_SNP [dm3] 2R_23088478_SNP [dm6]	T	C	4.372e^-5	0.416	DOWNSTREAM CG13538 INTERGENIC
3L	24086198	3L_24086198_SNP [dm3] 3L_24093098_SNP [dm6]	C	T	4.425e^-5	0.417	INTRON Snap25
2L	4307960	2L_4307960_SNP [dm3] 2L_4307960_SNP [dm6]	T	C	4.451e^-5	0.417	SYNONYMOUS_CODING tutl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	23835857	3L_23835857_SNP [dm3] 3L_23842757_SNP [dm6]	C	T	4.466e^-5	0.417	INTRON CG40470
3L	23460837	3L_23460837_SNP [dm3] 3L_23467737_SNP [dm6]	T	C	4.481e^-5	0.417	INTERGENIC
2L	10179297	2L_10179297_SNP [dm3] 2L_10179297_SNP [dm6]	C	T	4.489e^-5	0.417	INTRON CG44153
3R	4010876	3R_4010876_SNP [dm3] 3R_8185154_SNP [dm6]	C	G	4.545e^-5	0.419	INTERGENIC
3R	16611536	3R_16611536_SNP [dm3] 3R_20785814_SNP [dm6]	T	C	4.575e^-5	0.419	INTRON Syp
2L	9010706	2L_9010706_SNP [dm3] 2L_9010706_SNP [dm6]	T	C	4.590e^-5	0.419	NON_SYNONYMOUS_CODING CG9568
2L	10639634	2L_10639634_SNP [dm3] 2L_10639634_SNP [dm6]	T	C	4.617e^-5	0.419	UPSTREAM CG31872 DOWNSTREAM CR45351 INTERGENIC
3L	12302013	3L_12302013_SNP [dm3] 3L_12308913_SNP [dm6]	A	G	4.631e^-5	0.419	INTERGENIC
X	16159162	X_16159162_SNP [dm3] X_16265129_SNP [dm6]	G	T	4.670e^-5	0.419	DOWNSTREAM CG12507 INTERGENIC
3L	9132763	3L_9132763_SNP [dm3] 3L_9139663_SNP [dm6]	G	C	4.684e^-5	0.419	INTRON nwk
3L	16736288	3L_16736288_SNP [dm3] 3L_16743188_SNP [dm6]	G	T	4.686e^-5	0.419	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	15549186	3R_15549186_SNP [dm3] 3R_19723464_SNP [dm6]	A	T	4.755e^-5	0.423	INTERGENIC
2L	18071280	2L_18071280_SNP [dm3] 2L_18071280_SNP [dm6]	A	G	4.787e^-5	0.423	INTERGENIC	TF binding site mE1_TFBS_inv
3R	15551669	3R_15551669_SNP [dm3] 3R_19725947_SNP [dm6]	A	G	4.798e^-5	0.423	INTERGENIC
3L	14327074	3L_14327074_SNP [dm3] 3L_14333974_SNP [dm6]	C	G	4.823e^-5	0.423	INTRON fz	TF binding site BDTNP1_TFBS_twi
3R	22769515	3R_22769515_SNP [dm3] 3R_26943793_SNP [dm6]	A	G	4.872e^-5	0.425	INTRON sda
3R	15551739	3R_15551739_DEL [dm3] 3R_19726017_DEL [dm6]	TAT	A	4.898e^-5	0.425	INTERGENIC
2R	15892374	2R_15892374_SNP [dm3] 2R_20004869_SNP [dm6]	G	A	4.931e^-5	0.426	SYNONYMOUS_CODING CG16898	TF binding site mE1_TFBS_HSA
3L	23791492	3L_23791492_SNP [dm3] 3L_23798392_SNP [dm6]	G	T	4.951e^-5	0.426	INTERGENIC
3R	13438776	3R_13438776_SNP [dm3] 3R_17613054_SNP [dm6]	A	C	4.979e^-5	0.426	SYNONYMOUS_CODING CG34281 UPSTREAM CG14327
3L	23873985	3L_23873985_SNP [dm3] 3L_23880885_SNP [dm6]	G	A	5.029e^-5	0.427	DOWNSTREAM CR43941 INTRON CG40470	TF binding site mE1_TFBS_inv
2L	4928598	2L_4928598_SNP [dm3] 2L_4928598_SNP [dm6]	C	T	5.036e^-5	0.427	UPSTREAM hoe1 INTRON hoe1
3L	12080458	3L_12080458_SNP [dm3] 3L_12087358_SNP [dm6]	C	G	5.086e^-5	0.43	INTERGENIC
3L	13377087	3L_13377087_INS [dm3] 3L_13383987_INS [dm6]	T	TATATT	5.131e^-5	0.43	UTR_3_PRIME ImpL1 UPSTREAM CG14110	TF binding site mE1_TFBS_cad
3R	17223646	3R_17223646_SNP [dm3] 3R_21397924_SNP [dm6]	C	T	5.135e^-5	0.43	NON_SYNONYMOUS_CODING CG6475
X	16883453	X_16883453_SNP [dm3] X_16989420_SNP [dm6]	T	A	5.159e^-5	0.43	INTRON CG45002
3R	4010401	3R_4010401_SNP [dm3] 3R_8184679_SNP [dm6]	C	G	5.196e^-5	0.431	INTERGENIC
3L	23816320	3L_23816320_SNP [dm3] 3L_23823220_SNP [dm6]	T	C	5.222e^-5	0.431	INTERGENIC	transposable element FlyBase
3L	23606317	3L_23606317_SNP [dm3] 3L_23613217_SNP [dm6]	C	A	5.374e^-5	0.437	INTRON AGO3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3L	23647954	3L_23647954_SNP [dm3] 3L_23654854_SNP [dm6]	C	T	5.379e^-5	0.437	INTRON AGO3	transposable element FlyBase
3L	24219398	3L_24219398_SNP [dm3] 3L_24226298_SNP [dm6]	G	C	5.387e^-5	0.437	INTRON Snap25
3L	7193790	3L_7193790_SNP [dm3] 3L_7200690_SNP [dm6]	T	A	5.388e^-5	0.437	INTERGENIC
3R	15551876	3R_15551876_SNP [dm3] 3R_19726154_SNP [dm6]	C	T	5.405e^-5	0.437	INTERGENIC
2L	14573574	2L_14573574_SNP [dm3] 2L_14573574_SNP [dm6]	T	C	5.427e^-5	0.437	INTERGENIC
3L	2847420	3L_2847420_SNP [dm3] 3L_2847420_SNP [dm6]	T	C	5.471e^-5	0.437	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	23289120	3L_23289120_SNP [dm3] 3L_23296020_SNP [dm6]	C	A	5.479e^-5	0.437	INTERGENIC
3L	23810805	3L_23810805_SNP [dm3] 3L_23817705_SNP [dm6]	T	A	5.511e^-5	0.438	INTERGENIC	transposable element FlyBase
3R	9188127	3R_9188127_SNP [dm3] 3R_13362405_SNP [dm6]	C	T	5.537e^-5	0.438	SYNONYMOUS_CODING poly	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12111186	3L_12111186_SNP [dm3] 3L_12118086_SNP [dm6]	C	A	5.605e^-5	0.442	UPSTREAM ssp DOWNSTREAM l_3_j2D3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	6455315	X_6455315_SNP [dm3] X_6561282_SNP [dm6]	A	C	5.651e^-5	0.442	SYNONYMOUS_CODING CG34417
3R	14826134	3R_14826134_SNP [dm3] 3R_19000412_SNP [dm6]	A	C	5.653e^-5	0.442	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	23760572	3L_23760572_SNP [dm3] 3L_23767472_SNP [dm6]	A	G	5.708e^-5	0.444	INTERGENIC	transposable element FlyBase
2R	18946793	2R_18946793_SNP [dm3] 2R_23059270_SNP [dm6]	T	A	5.799e^-5	0.449	SYNONYMOUS_CODING CG44252 DOWNSTREAM CG44253
2R	7355909	2R_7355909_SNP [dm3] 2R_11468404_SNP [dm6]	A	G	5.852e^-5	0.449	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	5795740	3L_5795740_SNP [dm3] 3L_5802640_SNP [dm6]	G	A	5.911e^-5	0.449	UPSTREAM CG42272 INTRON S6k	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	24394664	3L_24394664_SNP [dm3] 3L_24401564_SNP [dm6]	A	G	5.912e^-5	0.449	UTR_3_PRIME nvd
3L	7987364	3L_7987364_SNP [dm3] 3L_7994264_SNP [dm6]	A	G	5.969e^-5	0.449	INTRON nmo	TF binding site mE1_TFBS_cad
2L	18416263	2L_18416263_SNP [dm3] 2L_18416263_SNP [dm6]	G	T	5.981e^-5	0.449	INTERGENIC
3L	16736290	3L_16736290_SNP [dm3] 3L_16743190_SNP [dm6]	A	G	5.992e^-5	0.449	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	14327289	3L_14327289_SNP [dm3] 3L_14334189_SNP [dm6]	G	A	6.005e^-5	0.449	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12844635	3L_12844635_SNP [dm3] 3L_12851535_SNP [dm6]	T	C	6.062e^-5	0.449	SYNONYMOUS_CODING Wbp2 INTRON Wbp2	TF binding site mE1_TFBS_chinmo
3R	8634682	3R_8634682_SNP [dm3] 3R_12808960_SNP [dm6]	C	T	6.073e^-5	0.449	INTERGENIC
3R	25979387	3R_25979387_SNP [dm3] 3R_30153665_SNP [dm6]	A	T	6.084e^-5	0.449	DOWNSTREAM CG15529 INTRON CG11498	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	23202799	3L_23202799_SNP [dm3] 3L_23209699_SNP [dm6]	C	T	6.096e^-5	0.449	INTRON nAChRalpha4	transposable element FlyBase
3L	23816727	3L_23816727_SNP [dm3] 3L_23823627_SNP [dm6]	G	C	6.104e^-5	0.449	INTERGENIC	transposable element FlyBase
2L	18649109	2L_18649109_SNP [dm3] 2L_18649109_SNP [dm6]	A	G	6.109e^-5	0.449	INTRON MESR3
2R	13657853	2R_13657853_SNP [dm3] 2R_17770348_SNP [dm6]	G	T	6.165e^-5	0.452	UPSTREAM CG18635 DOWNSTREAM CG6362 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	10549252	2R_10549252_SNP [dm3] 2R_14661747_SNP [dm6]	G	C	6.226e^-5	0.454	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9350994	2R_9350994_SNP [dm3] 2R_13463489_SNP [dm6]	C	G	6.252e^-5	0.455	INTRON arr
3R	8386305	3R_8386305_SNP [dm3] 3R_12560583_SNP [dm6]	G	C	6.335e^-5	0.459	NON_SYNONYMOUS_CODING Octbeta2R
2R	13657644	2R_13657644_SNP [dm3] 2R_17770139_SNP [dm6]	C	T	6.356e^-5	0.459	UPSTREAM CG18635 DOWNSTREAM CG6362 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	15552112	3R_15552112_DEL [dm3] 3R_19726390_DEL [dm6]	TT	T	6.489e^-5	0.466	INTERGENIC
3R	14826203	3R_14826203_SNP [dm3] 3R_19000481_SNP [dm6]	T	C	6.562e^-5	0.468	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	24500141	3L_24500141_SNP [dm3] 3L_24507041_SNP [dm6]	G	T	6.576e^-5	0.468	INTERGENIC
3R	9340119	3R_9340119_SNP [dm3] 3R_13514397_SNP [dm6]	G	A	6.584e^-5	0.468	INTERGENIC
3L	23817673	3L_23817673_SNP [dm3] 3L_23824573_SNP [dm6]	A	T	6.606e^-5	0.468	INTERGENIC
3L	23716811	3L_23716811_SNP [dm3] 3L_23723711_SNP [dm6]	A	T	6.703e^-5	0.472	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12651099	2L_12651099_SNP [dm3] 2L_12651099_SNP [dm6]	C	G	6.727e^-5	0.472	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12652191	2L_12652191_SNP [dm3] 2L_12652191_SNP [dm6]	G	A	6.741e^-5	0.472	INTERGENIC
2R	18947364	2R_18947364_SNP [dm3] 2R_23059841_SNP [dm6]	G	A	6.767e^-5	0.472	SYNONYMOUS_CODING CG44252	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18944703	2R_18944703_SNP [dm3] 2R_23057180_SNP [dm6]	T	C	6.884e^-5	0.478	INTRON CG44252
3R	17685777	3R_17685777_SNP [dm3] 3R_21860055_SNP [dm6]	G	A	6.919e^-5	0.479	DOWNSTREAM CR45644 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	13091618	3R_13091618_SNP [dm3] 3R_17265896_SNP [dm6]	A	T	6.991e^-5	0.479	UPSTREAM beat-IIb DOWNSTREAM CG44257 INTERGENIC
2R	19082429	2R_19082429_SNP [dm3] 2R_23194906_SNP [dm6]	C	A	6.994e^-5	0.479	INTRON CG34371	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	17641407	2R_17641407_SNP [dm3] 2R_21753902_SNP [dm6]	C	A	7.022e^-5	0.479	INTERGENIC
2R	9351004	2R_9351004_SNP [dm3] 2R_13463499_SNP [dm6]	C	A	7.026e^-5	0.479	INTRON arr
3L	15391293	3L_15391293_DEL [dm3] 3L_15398193_DEL [dm6]	GG	G	7.093e^-5	0.481	INTERGENIC
2R	3891102	2R_3891102_SNP [dm3] 2R_8003597_SNP [dm6]	T	C	7.119e^-5	0.481	INTERGENIC
3R	11294941	3R_11294941_SNP [dm3] 3R_15469219_SNP [dm6]	C	A	7.132e^-5	0.481	INTRON AdamTS-A
3R	16104661	3R_16104661_SNP [dm3] 3R_20278939_SNP [dm6]	C	T	7.160e^-5	0.481	INTRON cic
X	16436632	X_16436632_SNP [dm3] X_16542599_SNP [dm6]	C	A	7.185e^-5	0.481	UTR_3_PRIME CG9902 DOWNSTREAM CG9902
3R	9840693	3R_9840693_SNP [dm3] 3R_14014971_SNP [dm6]	G	A	7.274e^-5	0.484	INTRON rdx
2R	18212275	2R_18212275_SNP [dm3] 2R_22324770_SNP [dm6]	G	A	7.281e^-5	0.484	UPSTREAM Gp150 INTRON Gp150	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_sens
2L	10300849	2L_10300849_SNP [dm3] 2L_10300849_SNP [dm6]	T	G	7.300e^-5	0.484	SYNONYMOUS_CODING CG13138	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3R	13129286	3R_13129286_SNP [dm3] 3R_17303564_SNP [dm6]	G	T	7.325e^-5	0.484	INTERGENIC
3L	23838426	3L_23838426_SNP [dm3] 3L_23845326_SNP [dm6]	A	T	7.407e^-5	0.487	INTRON CG40470
2L	9618772	2L_9618772_SNP [dm3] 2L_9618772_SNP [dm6]	G	C	7.443e^-5	0.488	INTRON GlcAT-S
3L	23816250	3L_23816250_SNP [dm3] 3L_23823150_SNP [dm6]	A	G	7.473e^-5	0.488	INTERGENIC	transposable element FlyBase
2L	13503418	2L_13503418_SNP [dm3] 2L_13503418_SNP [dm6]	C	G	7.545e^-5	0.491	UTR_3_PRIME B4
2R	16967757	2R_16967757_SNP [dm3] 2R_21080252_SNP [dm6]	G	C	7.576e^-5	0.492	UPSTREAM Treh INTRON Treh
3L	23228616	3L_23228616_SNP [dm3] 3L_23235516_SNP [dm6]	C	T	7.647e^-5	0.493	INTRON nAChRalpha4	transposable element FlyBase
2L	12075511	2L_12075511_SNP [dm3] 2L_12075511_SNP [dm6]	C	A	7.651e^-5	0.493	UPSTREAM CG14947 INTERGENIC
3L	23814048	3L_23814048_SNP [dm3] 3L_23820948_SNP [dm6]	C	A	7.693e^-5	0.494	INTERGENIC	transposable element FlyBase
3L	13376252	3L_13376252_SNP [dm3] 3L_13383152_SNP [dm6]	C	G	7.745e^-5	0.495	SYNONYMOUS_CODING ImpL1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	23446544	3L_23446544_SNP [dm3] 3L_23453444_SNP [dm6]	G	T	7.775e^-5	0.495	INTERGENIC
2L	563889	2L_563889_SNP [dm3] 2L_563889_SNP [dm6]	A	T	7.784e^-5	0.495	UPSTREAM CG2794 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
2R	14011097	2R_14011097_SNP [dm3] 2R_18123592_SNP [dm6]	G	T	7.867e^-5	0.499	INTRON stau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	21799199	3L_21799199_INS [dm3] 3L_21806099_INS [dm6]	T	TT	7.901e^-5	0.499	INTERGENIC
2L	1785886	2L_1785886_SNP [dm3] 2L_1785886_SNP [dm6]	C	T	7.944e^-5	0.5	DOWNSTREAM Gr22e INTERGENIC
2R	14421782	2R_14421782_SNP [dm3] 2R_18534277_SNP [dm6]	G	A	7.984e^-5	0.501	SYNONYMOUS_CODING CG10924	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	1652589	2L_1652589_SNP [dm3] 2L_1652589_SNP [dm6]	C	T	8.053e^-5	0.504	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5180698	X_5180698_DEL [dm3] X_5286665_DEL [dm6]	TT	T	8.085e^-5	0.504	INTERGENIC
3R	13091007	3R_13091007_SNP [dm3] 3R_17265285_SNP [dm6]	G	T	8.152e^-5	0.506	START_GAINED CG44257 UTR_5_PRIME CG44257 UPSTREAM beat-IIb
3L	24185421	3L_24185421_SNP [dm3] 3L_24192321_SNP [dm6]	A	T	8.296e^-5	0.512	INTRON Snap25
3L	15508057	3L_15508057_SNP [dm3] 3L_15514957_SNP [dm6]	T	C	8.310e^-5	0.512	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12338456	3L_12338456_SNP [dm3] 3L_12345356_SNP [dm6]	T	C	8.336e^-5	0.512	INTRON CrzR
2L	15818178	2L_15818178_SNP [dm3] 2L_15818178_SNP [dm6]	T	G	8.345e^-5	0.512	INTERGENIC
2L	9867397	2L_9867397_SNP [dm3] 2L_9867397_SNP [dm6]	T	C	8.418e^-5	0.513	INTRON nAChRalpha6
2L	9622514	2L_9622514_SNP [dm3] 2L_9622514_SNP [dm6]	G	T	8.468e^-5	0.513	UTR_3_PRIME GlcAT-S
3R	26418642	3R_26418642_SNP [dm3] 3R_30592920_SNP [dm6]	G	C	8.494e^-5	0.513	DOWNSTREAM CG2246 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23519456	3R_23519456_SNP [dm3] 3R_27693734_SNP [dm6]	C	T	8.497e^-5	0.513	UPSTREAM CG43319 DOWNSTREAM CG12880 INTERGENIC
2R	6830294	2R_6830294_SNP [dm3] 2R_10942789_SNP [dm6]	A	T	8.542e^-5	0.513	INTERGENIC
2R	3466590	2R_3466590_SNP [dm3] 2R_7579085_SNP [dm6]	C	T	8.557e^-5	0.513	SYNONYMOUS_CODING Vps13 EXON CR45130
2R	13657696	2R_13657696_SNP [dm3] 2R_17770191_SNP [dm6]	C	T	8.567e^-5	0.513	UPSTREAM CG18635 DOWNSTREAM CG6362 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	23816734	3L_23816734_SNP [dm3] 3L_23823634_SNP [dm6]	C	T	8.656e^-5	0.513	INTERGENIC	transposable element FlyBase
3L	3027919	3L_3027919_SNP [dm3] 3L_3027919_SNP [dm6]	A	G	8.686e^-5	0.513	INTERGENIC
3L	23816247	3L_23816247_SNP [dm3] 3L_23823147_SNP [dm6]	G	T	8.705e^-5	0.513	INTERGENIC	transposable element FlyBase
3R	13041493	3R_13041493_INS [dm3] 3R_17215771_INS [dm6]	A	AC	8.715e^-5	0.513	INTERGENIC
3L	7353425	3L_7353425_SNP [dm3] 3L_7360325_SNP [dm6]	T	G	8.725e^-5	0.513	UPSTREAM Sec63 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	7193744	3L_7193744_SNP [dm3] 3L_7200644_SNP [dm6]	T	C	8.767e^-5	0.513	INTERGENIC
3L	3922016	3L_3922016_SNP [dm3] 3L_3922016_SNP [dm6]	C	T	8.785e^-5	0.513	INTRON Eip63F-1
3L	23869161	3L_23869161_SNP [dm3] 3L_23876061_SNP [dm6]	C	T	8.785e^-5	0.513	INTRON CG40470
3L	23237199	3L_23237199_SNP [dm3] 3L_23244099_SNP [dm6]	C	T	8.867e^-5	0.515	INTRON nAChRalpha4	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	23204468	3L_23204468_SNP [dm3] 3L_23211368_SNP [dm6]	T	A	8.878e^-5	0.515	INTRON nAChRalpha4	transposable element FlyBase
3R	22614925	3R_22614925_SNP [dm3] 3R_26789203_SNP [dm6]	C	A	8.891e^-5	0.515	INTERGENIC
2R	14682080	2R_14682080_SNP [dm3] 2R_18794575_SNP [dm6]	A	C	8.927e^-5	0.515	UTR_3_PRIME CG15080 DOWNSTREAM MFS15
3L	14497176	3L_14497176_SNP [dm3] 3L_14504076_SNP [dm6]	G	C	9.009e^-5	0.518	INTRON bbg
3L	23749578	3L_23749578_SNP [dm3] 3L_23756478_SNP [dm6]	T	G	9.110e^-5	0.52	INTERGENIC	transposable element FlyBase
3L	9130465	3L_9130465_DEL [dm3] 3L_9137365_DEL [dm6]	TC	T	9.158e^-5	0.52	UPSTREAM nwk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	18427424	3R_18427424_SNP [dm3] 3R_22601702_SNP [dm6]	C	T	9.207e^-5	0.52	INTRON Efa6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14295538	2R_14295538_SNP [dm3] 2R_18408033_SNP [dm6]	A	G	9.233e^-5	0.52	SYNONYMOUS_CODING GstE8 DOWNSTREAM GstE7	TF binding site mE1_TFBS_Trl
2R	13657736	2R_13657736_SNP [dm3] 2R_17770231_SNP [dm6]	T	C	9.252e^-5	0.52	UPSTREAM CG18635 DOWNSTREAM CG6362 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	12107335	X_12107335_SNP [dm3] X_12213302_SNP [dm6]	G	C	9.277e^-5	0.52	INTRON Ten-a
3L	20955944	3L_20955944_SNP [dm3] 3L_20962844_SNP [dm6]	A	G	9.278e^-5	0.52	UTR_3_PRIME CG12983 UPSTREAM CG10587	TF binding site BDTNP1_TFBS_prd mE1_TFBS_sens
3L	9557206	3L_9557206_SNP [dm3] 3L_9564106_SNP [dm6]	A	C	9.283e^-5	0.52	INTRON CG42673
3R	8129642	3R_8129642_SNP [dm3] 3R_12303920_SNP [dm6]	C	T	9.340e^-5	0.52	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	9894231	3L_9894231_INS [dm3] 3L_9901131_INS [dm6]	T	TT	9.346e^-5	0.52	DOWNSTREAM nudE INTRON nudE
3R	25979414	3R_25979414_SNP [dm3] 3R_30153692_SNP [dm6]	A	C	9.426e^-5	0.52	DOWNSTREAM CG15529 INTRON CG11498	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2R	9684680	2R_9684680_SNP [dm3] 2R_13797175_SNP [dm6]	A	T	9.450e^-5	0.52	INTRON Cpr50Cb
3L	7620131	3L_7620131_SNP [dm3] 3L_7627031_SNP [dm6]	G	A	9.462e^-5	0.52	INTRON CG33275
X	6455531	X_6455531_SNP [dm3] X_6561498_SNP [dm6]	G	A	9.472e^-5	0.52	SYNONYMOUS_CODING CG34417	TF binding site mE1_TFBS_sens
2R	15269554	2R_15269554_SNP [dm3] 2R_19382049_SNP [dm6]	T	C	9.485e^-5	0.52	SYNONYMOUS_CODING CG10073
X	16079708	X_16079708_DEL [dm3] X_16185675_DEL [dm6]	TA	T	9.489e^-5	0.52	INTERGENIC
2R	8896541	2R_8896541_SNP [dm3] 2R_13009036_SNP [dm6]	G	A	9.523e^-5	0.52	INTERGENIC	TF binding site mE1_TFBS_cad
2R	16145479	2R_16145479_SNP [dm3] 2R_20257974_SNP [dm6]	A	T	9.531e^-5	0.52	UPSTREAM Hsl & 1 other INTRON Hsl	TF binding site mE1_TFBS_cad
3L	23935231	3L_23935231_SNP [dm3] 3L_23942131_SNP [dm6]	A	T	9.567e^-5	0.52	INTRON CG40470
3L	20272065	3L_20272065_SNP [dm3] 3L_20278965_SNP [dm6]	A	G	9.611e^-5	0.521	INTRON gogo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	21896969	2L_21896969_SNP [dm3] 2L_21896969_SNP [dm6]	A	C	9.675e^-5	0.521	SYNONYMOUS_CODING CG11629	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8992366	2R_8992366_DEL [dm3] 2R_13104861_DEL [dm6]	TGGGTATAATT...	T	9.685e^-5	0.521	UTR_3_PRIME CG44341
3R	26955857	3R_26955857_SNP [dm3] 3R_31130135_SNP [dm6]	G	T	9.698e^-5	0.521	NON_SYNONYMOUS_CODING CG15556	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22683933	3R_22683933_SNP [dm3] 3R_26858211_SNP [dm6]	A	T	9.765e^-5	0.522	INTRON Lerp
3L	17780749	3L_17780749_SNP [dm3] 3L_17787649_SNP [dm6]	C	T	9.781e^-5	0.522	INTERGENIC
3L	1601565	3L_1601565_SNP [dm3] 3L_1601565_SNP [dm6]	A	G	9.798e^-5	0.522	SYNONYMOUS_CODING CG12104 DOWNSTREAM CG13917	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14348884	3L_14348884_SNP [dm3] 3L_14355784_SNP [dm6]	G	C	9.849e^-5	0.522	INTRON fz	TF binding site BDTNP1_TFBS_dl
X	14395089	X_14395089_SNP [dm3] X_14501056_SNP [dm6]	A	G	9.864e^-5	0.522	INTERGENIC
3L	16136358	3L_16136358_SNP [dm3] 3L_16143258_SNP [dm6]	G	A	9.887e^-5	0.522	SYNONYMOUS_CODING CG32152 UTR_5_PRIME CG5151 INTRON CG5151	TF binding site mE1_TFBS_sens
3L	11297057	3L_11297057_SNP [dm3] 3L_11303957_SNP [dm6]	A	T	9.957e^-5	0.525	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16100634	X_16100634_SNP [dm3] X_16206601_SNP [dm6]	C	A	1.008e^-4	0.525	INTERGENIC
2R	12239796	2R_12239796_SNP [dm3] 2R_16352291_SNP [dm6]	C	T	1.008e^-4	0.525	INTERGENIC
3R	15549144	3R_15549144_SNP [dm3] 3R_19723422_SNP [dm6]	A	C	1.010e^-4	0.525	INTERGENIC
3L	12480197	3L_12480197_SNP [dm3] 3L_12487097_SNP [dm6]	G	T	1.012e^-4	0.525	SYNONYMOUS_CODING CG10660 DOWNSTREAM CG33725
3L	23464960	3L_23464960_SNP [dm3] 3L_23471860_SNP [dm6]	A	G	1.013e^-4	0.525	INTERGENIC	transposable element FlyBase
3L	23790061	3L_23790061_SNP [dm3] 3L_23796961_SNP [dm6]	C	G	1.016e^-4	0.525	INTERGENIC	transposable element FlyBase
2L	8786457	2L_8786457_DEL [dm3] 2L_8786457_DEL [dm6]	TG	T	1.017e^-4	0.525	INTERGENIC
2L	947252	2L_947252_SNP [dm3] 2L_947252_SNP [dm6]	A	C	1.020e^-4	0.525	INTRON CG4341
3R	10410769	3R_10410769_SNP [dm3] 3R_14585047_SNP [dm6]	A	T	1.023e^-4	0.525	INTRON stumps	TF binding site BDTNP1_TFBS_prd
X	13182229	X_13182229_SNP [dm3] X_13288196_SNP [dm6]	G	A	1.024e^-4	0.525	UTR_5_PRIME CG15744 DOWNSTREAM CG15743	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	10860276	3L_10860276_DEL [dm3] 3L_10867176_DEL [dm6]	TGCTCACCCGCCATCCA...	T	1.027e^-4	0.525	INTRON tna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14425429	2R_14425429_SNP [dm3] 2R_18537924_SNP [dm6]	A	G	1.034e^-4	0.527	SYNONYMOUS_CODING Pepck UTR_3_PRIME CG45087	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5834992	3L_5834992_SNP [dm3] 3L_5841892_SNP [dm6]	A	G	1.038e^-4	0.527	INTRON vn	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	16708028	X_16708028_SNP [dm3] X_16813995_SNP [dm6]	C	G	1.050e^-4	0.53	INTRON CG4829
2L	18124837	2L_18124837_SNP [dm3] 2L_18124837_SNP [dm6]	C	G	1.053e^-4	0.53	NON_SYNONYMOUS_CODING CG31785 INTRON CG5758	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10644197	2L_10644197_SNP [dm3] 2L_10644197_SNP [dm6]	C	A	1.054e^-4	0.53	DOWNSTREAM CG31872 INTRON CG18284
3L	9918562	3L_9918562_SNP [dm3] 3L_9925462_SNP [dm6]	C	T	1.055e^-4	0.53	INTRON CG34356
3L	12689414	3L_12689414_SNP [dm3] 3L_12696314_SNP [dm6]	T	A	1.065e^-4	0.534	INTRON mirr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18028008	2R_18028008_SNP [dm3] 2R_22140503_SNP [dm6]	C	T	1.070e^-4	0.535	SYNONYMOUS_CODING gom INTRON a	TF binding site mE1_TFBS_chinmo
3L	24077015	3L_24077015_SNP [dm3] 3L_24083915_SNP [dm6]	A	G	1.082e^-4	0.54	INTRON Snap25
3R	22600069	3R_22600069_SNP [dm3] 3R_26774347_SNP [dm6]	C	G	1.089e^-4	0.541	INTERGENIC
2R	7574102	2R_7574102_SNP [dm3] 2R_11686597_SNP [dm6]	A	T	1.090e^-4	0.541	UPSTREAM CG13196 INTRON Buffy	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	8481382	2R_8481382_DEL [dm3] 2R_12593877_DEL [dm6]	CC	C	1.095e^-4	0.542	UTR_5_PRIME Amph UPSTREAM Sin3A & 1 other DOWNSTREAM CR43909	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
3R	12940656	3R_12940656_SNP [dm3] 3R_17114934_SNP [dm6]	C	T	1.100e^-4	0.542	INTRON cher
3L	8891499	3L_8891499_SNP [dm3] 3L_8898399_SNP [dm6]	C	T	1.104e^-4	0.542	INTRON TrpA1
3L	23882364	3L_23882364_SNP [dm3] 3L_23889264_SNP [dm6]	T	C	1.105e^-4	0.542	NON_SYNONYMOUS_CODING CG40470	TF binding site mE1_TFBS_kn
X	8859130	X_8859130_DEL [dm3] X_8965097_DEL [dm6]	TT	T	1.117e^-4	0.544	UPSTREAM mir-4964 INTRON rdgA
3R	10807704	3R_10807704_SNP [dm3] 3R_14981982_SNP [dm6]	G	C	1.117e^-4	0.544	INTERGENIC
2L	4928538	2L_4928538_SNP [dm3] 2L_4928538_SNP [dm6]	A	G	1.125e^-4	0.544	UPSTREAM hoe1 INTRON hoe1
X	6455339	X_6455339_SNP [dm3] X_6561306_SNP [dm6]	G	T	1.128e^-4	0.544	SYNONYMOUS_CODING CG34417
3L	11776952	3L_11776952_SNP [dm3] 3L_11783852_SNP [dm6]	C	T	1.130e^-4	0.544	SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	11297118	3L_11297118_SNP [dm3] 3L_11304018_SNP [dm6]	C	T	1.130e^-4	0.544	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7548699	3L_7548699_SNP [dm3] 3L_7555599_SNP [dm6]	C	A	1.135e^-4	0.544	DOWNSTREAM CG14837 INTERGENIC
2L	6285630	2L_6285630_SNP [dm3] 2L_6285630_SNP [dm6]	T	C	1.139e^-4	0.544	INTRON Ddr	TF binding site mE1_TFBS_cad
3R	13278713	3R_13278713_SNP [dm3] 3R_17452991_SNP [dm6]	C	T	1.149e^-4	0.544	INTERGENIC
3L	15391236	3L_15391236_SNP [dm3] 3L_15398136_SNP [dm6]	A	C	1.154e^-4	0.544	INTERGENIC
X	13184473	X_13184473_SNP [dm3] X_13290440_SNP [dm6]	T	C	1.158e^-4	0.544	SYNONYMOUS_CODING CG15744	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14909472	3R_14909472_SNP [dm3] 3R_19083750_SNP [dm6]	G	A	1.160e^-4	0.544	INTRON cdi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14107052	3L_14107052_SNP [dm3] 3L_14113952_SNP [dm6]	A	G	1.160e^-4	0.544	INTRON Sox21b
2L	6238737	2L_6238737_SNP [dm3] 2L_6238737_SNP [dm6]	G	T	1.168e^-4	0.544	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	23709986	3L_23709986_SNP [dm3] 3L_23716886_SNP [dm6]	A	T	1.170e^-4	0.544	DOWNSTREAM CG17454 INTERGENIC	transposable element FlyBase
2R	14088081	2R_14088081_SNP [dm3] 2R_18200576_SNP [dm6]	T	A	1.171e^-4	0.544	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12550731	2L_12550731_DEL [dm3] 2L_12550731_DEL [dm6]	AA	A	1.174e^-4	0.544	INTERGENIC
2L	21900063	2L_21900063_SNP [dm3] 2L_21900063_SNP [dm6]	T	A	1.174e^-4	0.544	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	21465760	3R_21465760_SNP [dm3] 3R_25640038_SNP [dm6]	A	T	1.176e^-4	0.544	INTRON jigr1
3L	7549106	3L_7549106_SNP [dm3] 3L_7556006_SNP [dm6]	A	C	1.182e^-4	0.544	SYNONYMOUS_CODING CG14837
3L	6308201	3L_6308201_SNP [dm3] 3L_6315101_SNP [dm6]	G	A	1.184e^-4	0.544	INTERGENIC
2R	16610796	2R_16610796_SNP [dm3] 2R_20723291_SNP [dm6]	T	C	1.186e^-4	0.544	DOWNSTREAM CR44660 INTRON dpr
X	9514207	X_9514207_SNP [dm3] X_9620174_SNP [dm6]	C	T	1.190e^-4	0.544	INTRON CG42797	TF binding site mE1_TFBS_chinmo
X	15860198	X_15860198_SNP [dm3] X_15966165_SNP [dm6]	G	C	1.192e^-4	0.544	UPSTREAM mir-927 INTRON mmd
2L	9619369	2L_9619369_SNP [dm3] 2L_9619369_SNP [dm6]	C	A	1.195e^-4	0.544	INTRON GlcAT-S
3L	24252124	3L_24252124_SNP [dm3] 3L_24259024_SNP [dm6]	G	C	1.196e^-4	0.544	INTRON Snap25
3L	15703899	3L_15703899_SNP [dm3] 3L_15710799_SNP [dm6]	G	T	1.197e^-4	0.544	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	16533818	3L_16533818_SNP [dm3] 3L_16540718_SNP [dm6]	T	A	1.198e^-4	0.544	INTRON CG43373
2L	4443523	2L_4443523_SNP [dm3] 2L_4443523_SNP [dm6]	A	G	1.200e^-4	0.544	SYNONYMOUS_CODING morgue DOWNSTREAM CG15432	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	14438135	2R_14438135_DEL [dm3] 2R_18550630_DEL [dm6]	ACCAATGTTCTGAAATTTAA...	A	1.200e^-4	0.544	INTERGENIC
3L	10706868	3L_10706868_SNP [dm3] 3L_10713768_SNP [dm6]	A	T	1.202e^-4	0.544	INTERGENIC
3R	15738197	3R_15738197_SNP [dm3] 3R_19912475_SNP [dm6]	A	G	1.202e^-4	0.544	SYNONYMOUS_CODING RhoGAP92B	TF binding site mE1_TFBS_cad
2L	4928673	2L_4928673_SNP [dm3] 2L_4928673_SNP [dm6]	C	T	1.203e^-4	0.544	UPSTREAM hoe1 INTRON hoe1
3L	11208532	3L_11208532_SNP [dm3] 3L_11215432_SNP [dm6]	A	T	1.211e^-4	0.544	UPSTREAM CG42671 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	12260988	2R_12260988_SNP [dm3] 2R_16373483_SNP [dm6]	T	G	1.214e^-4	0.544	INTERGENIC
3L	24499119	3L_24499119_SNP [dm3] 3L_24506019_SNP [dm6]	T	G	1.217e^-4	0.544	INTERGENIC
3R	12043924	3R_12043924_SNP [dm3] 3R_16218202_SNP [dm6]	G	A	1.218e^-4	0.544	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14685753	3L_14685753_SNP [dm3] 3L_14692653_SNP [dm6]	C	A	1.219e^-4	0.544	DOWNSTREAM CG13477 INTRON ome
3L	13117023	3L_13117023_SNP [dm3] 3L_13123923_SNP [dm6]	C	A	1.223e^-4	0.544	INTERGENIC
3R	10669611	3R_10669611_SNP [dm3] 3R_14843889_SNP [dm6]	C	G	1.229e^-4	0.544	INTRON btsz
3L	16533780	3L_16533780_SNP [dm3] 3L_16540680_SNP [dm6]	T	A	1.236e^-4	0.544	INTRON CG43373
3L	2782146	3L_2782146_SNP [dm3] 3L_2782146_SNP [dm6]	T	G	1.236e^-4	0.544	UPSTREAM pgant6 DOWNSTREAM mRpS35 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3L	4107852	3L_4107852_SNP [dm3] 3L_4107852_SNP [dm6]	G	T	1.243e^-4	0.544	UPSTREAM Ack & 1 other DOWNSTREAM Fit1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	18938191	2R_18938191_SNP [dm3] 2R_23050668_SNP [dm6]	A	T	1.244e^-4	0.544	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13603437	2R_13603437_SNP [dm3] 2R_17715932_SNP [dm6]	G	A	1.247e^-4	0.544	UTR_5_PRIME CG6424	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
2L	10720423	2L_10720423_SNP [dm3] 2L_10720423_SNP [dm6]	A	C	1.247e^-4	0.544	INTERGENIC
2R	18948993	2R_18948993_SNP [dm3] 2R_23061470_SNP [dm6]	C	A	1.256e^-4	0.544	UTR_3_PRIME CG44252 & 1 other
3R	21465818	3R_21465818_SNP [dm3] 3R_25640096_SNP [dm6]	T	A	1.256e^-4	0.544	INTRON jigr1
2L	10469461	2L_10469461_SNP [dm3] 2L_10469461_SNP [dm6]	C	G	1.261e^-4	0.544	INTRON RluA-1
3L	23220874	3L_23220874_SNP [dm3] 3L_23227774_SNP [dm6]	C	T	1.262e^-4	0.544	INTRON nAChRalpha4
2L	9615373	2L_9615373_SNP [dm3] 2L_9615373_SNP [dm6]	C	T	1.266e^-4	0.544	SYNONYMOUS_CODING Trx-2
2L	936040	2L_936040_SNP [dm3] 2L_936040_SNP [dm6]	G	A	1.266e^-4	0.544	INTRON CG4341	TF binding site mE1_TFBS_Trl
3R	14996116	3R_14996116_SNP [dm3] 3R_19170394_SNP [dm6]	T	G	1.270e^-4	0.544	UTR_3_PRIME sqz
2L	9601903	2L_9601903_SNP [dm3] 2L_9601903_SNP [dm6]	G	T	1.270e^-4	0.544	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15390868	3L_15390868_SNP [dm3] 3L_15397768_SNP [dm6]	A	G	1.277e^-4	0.544	INTERGENIC
2R	17130466	2R_17130466_SNP [dm3] 2R_21242961_SNP [dm6]	A	T	1.278e^-4	0.544	INTRON ASPP
3R	23632932	3R_23632932_SNP [dm3] 3R_27807210_SNP [dm6]	C	A	1.279e^-4	0.544	INTRON CG34353
X	8911288	X_8911288_SNP [dm3] X_9017255_SNP [dm6]	G	A	1.280e^-4	0.544	INTRON CR43836 & 1 other
3L	23713039	3L_23713039_SNP [dm3] 3L_23719939_SNP [dm6]	G	C	1.280e^-4	0.544	INTERGENIC	transposable element FlyBase
X	4292901	X_4292901_SNP [dm3] X_4398868_SNP [dm6]	A	T	1.282e^-4	0.544	INTRON CR32773
2L	4511886	2L_4511886_SNP [dm3] 2L_4511886_SNP [dm6]	T	A	1.286e^-4	0.544	SPLICE_SITE_REGION dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26099396	3R_26099396_SNP [dm3] 3R_30273674_SNP [dm6]	C	A	1.288e^-4	0.544	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7130086	2R_7130086_SNP [dm3] 2R_11242581_SNP [dm6]	A	T	1.293e^-4	0.544	UPSTREAM Listericin INTERGENIC
2R	17780009	2R_17780009_SNP [dm3] 2R_21892504_SNP [dm6]	A	G	1.297e^-4	0.544	INTRON Fili
3L	12338458	3L_12338458_SNP [dm3] 3L_12345358_SNP [dm6]	G	C	1.297e^-4	0.544	INTRON CrzR
3L	7548608	3L_7548608_SNP [dm3] 3L_7555508_SNP [dm6]	T	C	1.304e^-4	0.546	DOWNSTREAM CG14837 INTERGENIC
3L	23264402	3L_23264402_SNP [dm3] 3L_23271302_SNP [dm6]	T	A	1.315e^-4	0.548	INTRON nAChRalpha4
3R	9334947	3R_9334947_SNP [dm3] 3R_13509225_SNP [dm6]	T	G	1.316e^-4	0.548	INTERGENIC
2L	10393763	2L_10393763_SNP [dm3] 2L_10393763_SNP [dm6]	T	C	1.321e^-4	0.549	DOWNSTREAM Mdh1 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	19017557	2R_19017557_SNP [dm3] 2R_23130034_SNP [dm6]	G	A	1.323e^-4	0.549	SYNONYMOUS_CODING CG3215
3L	14324964	3L_14324964_SNP [dm3] 3L_14331864_SNP [dm6]	A	G	1.327e^-4	0.549	INTRON fz
3L	7867074	3L_7867074_SNP [dm3] 3L_7873974_SNP [dm6]	A	G	1.329e^-4	0.549	INTRON CG32365
3L	23934312	3L_23934312_SNP [dm3] 3L_23941212_SNP [dm6]	C	T	1.333e^-4	0.549	INTRON CG40470
X	8236001	X_8236001_SNP [dm3] X_8341968_SNP [dm6]	T	C	1.334e^-4	0.549	INTRON nAChRalpha3
X	8235997	X_8235997_SNP [dm3] X_8341964_SNP [dm6]	G	A	1.338e^-4	0.549	INTRON nAChRalpha3
3L	12480724	3L_12480724_SNP [dm3] 3L_12487624_SNP [dm6]	C	A	1.344e^-4	0.55	INTRON CG10660	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	18078855	2L_18078855_SNP [dm3] 2L_18078855_SNP [dm6]	C	A	1.351e^-4	0.552	INTRON Arr1	TF binding site mE1_TFBS_chinmo
2L	14451655	2L_14451655_SNP [dm3] 2L_14451655_SNP [dm6]	T	C	1.357e^-4	0.552	UPSTREAM CG15283 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	12006969	X_12006969_SNP [dm3] X_12112936_SNP [dm6]	C	T	1.357e^-4	0.552	SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other
3R	20565182	3R_20565182_SNP [dm3] 3R_24739460_SNP [dm6]	T	G	1.360e^-4	0.552	INTRON tok
3L	23815229	3L_23815229_SNP [dm3] 3L_23822129_SNP [dm6]	T	G	1.366e^-4	0.553	INTERGENIC	transposable element FlyBase
3L	2162275	3L_2162275_SNP [dm3] 3L_2162275_SNP [dm6]	T	C	1.368e^-4	0.553	INTRON CG15822
3R	10370500	3R_10370500_SNP [dm3] 3R_14544778_SNP [dm6]	G	A	1.376e^-4	0.555	INTRON Pde6
3L	11021284	3L_11021284_SNP [dm3] 3L_11028184_SNP [dm6]	G	A	1.387e^-4	0.556	SYNONYMOUS_CODING CG32081 DOWNSTREAM CG32079
3R	23632933	3R_23632933_SNP [dm3] 3R_27807211_SNP [dm6]	C	T	1.388e^-4	0.556	INTRON CG34353
2R	10471158	2R_10471158_SNP [dm3] 2R_14583653_SNP [dm6]	T	G	1.388e^-4	0.556	INTRON ttv	TF binding site mE1_TFBS_cad
3L	23689652	3L_23689652_INS [dm3] 3L_23696552_INS [dm6]	T	TTA	1.399e^-4	0.556	INTERGENIC	transposable element FlyBase
2R	13657733	2R_13657733_SNP [dm3] 2R_17770228_SNP [dm6]	T	A	1.402e^-4	0.556	UPSTREAM CG18635 DOWNSTREAM CG6362 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	14509424	3L_14509424_SNP [dm3] 3L_14516324_SNP [dm6]	T	C	1.405e^-4	0.556	INTRON bbg
3L	14685750	3L_14685750_SNP [dm3] 3L_14692650_SNP [dm6]	T	C	1.407e^-4	0.556	DOWNSTREAM CG13477 INTRON ome
X	19485201	X_19485201_SNP [dm3] X_19591168_SNP [dm6]	G	C	1.408e^-4	0.556	UPSTREAM CG14219 INTERGENIC
2L	14257237	2L_14257237_SNP [dm3] 2L_14257237_SNP [dm6]	T	C	1.408e^-4	0.556	INTERGENIC
3L	6308565	3L_6308565_SNP [dm3] 3L_6315465_SNP [dm6]	A	G	1.411e^-4	0.556	INTERGENIC	transposable element FlyBase
3L	23346321	3L_23346321_SNP [dm3] 3L_23353221_SNP [dm6]	G	C	1.411e^-4	0.556	INTERGENIC
3L	3834947	3L_3834947_SNP [dm3] 3L_3834947_SNP [dm6]	T	A	1.421e^-4	0.557	INTRON enc
X	17219055	X_17219055_SNP [dm3] X_17325022_SNP [dm6]	C	T	1.422e^-4	0.557	DOWNSTREAM B-H2 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Kr
3L	5835073	3L_5835073_SNP [dm3] 3L_5841973_SNP [dm6]	A	T	1.426e^-4	0.557	INTRON vn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	11824013	3L_11824013_SNP [dm3] 3L_11830913_SNP [dm6]	C	A	1.427e^-4	0.557	DOWNSTREAM CG7264 INTRON CycA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	7549100	3L_7549100_SNP [dm3] 3L_7556000_SNP [dm6]	T	C	1.429e^-4	0.557	SYNONYMOUS_CODING CG14837
3L	15393427	3L_15393427_SNP [dm3] 3L_15400327_SNP [dm6]	T	A	1.435e^-4	0.558	INTERGENIC
3R	9843353	3R_9843353_SNP [dm3] 3R_14017631_SNP [dm6]	G	A	1.446e^-4	0.56	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	13376114	3L_13376114_SNP [dm3] 3L_13383014_SNP [dm6]	C	G	1.446e^-4	0.56	SYNONYMOUS_CODING ImpL1	TF binding site mE1_TFBS_cad
3R	10703003	3R_10703003_SNP [dm3] 3R_14877281_SNP [dm6]	A	G	1.455e^-4	0.561	INTERGENIC
3R	15437876	3R_15437876_SNP [dm3] 3R_19612154_SNP [dm6]	G	A	1.457e^-4	0.561	SYNONYMOUS_CODING CG17752
3R	13036620	3R_13036620_SNP [dm3] 3R_17210898_SNP [dm6]	G	A	1.463e^-4	0.561	INTERGENIC
3L	6599063	3L_6599063_SNP [dm3] 3L_6605963_SNP [dm6]	G	C	1.470e^-4	0.561	UTR_5_PRIME zpg UPSTREAM CG8368 INTRON CG8368	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_sens
3R	21465759	3R_21465759_SNP [dm3] 3R_25640037_SNP [dm6]	T	A	1.472e^-4	0.561	INTRON jigr1
3R	1893262	3R_1893262_SNP [dm3] 3R_6067540_SNP [dm6]	G	C	1.473e^-4	0.561	INTERGENIC
3L	23767394	3L_23767394_SNP [dm3] 3L_23774294_SNP [dm6]	T	C	1.475e^-4	0.561	INTERGENIC
2R	10940764	2R_10940764_SNP [dm3] 2R_15053259_SNP [dm6]	G	T	1.478e^-4	0.561	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	9339424	3R_9339424_SNP [dm3] 3R_13513702_SNP [dm6]	C	T	1.481e^-4	0.561	INTERGENIC
3L	15389082	3L_15389082_SNP [dm3] 3L_15395982_SNP [dm6]	C	T	1.484e^-4	0.561	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12847114	3L_12847114_SNP [dm3] 3L_12854014_SNP [dm6]	G	C	1.484e^-4	0.561	UTR_5_PRIME Ent3 DOWNSTREAM Wbp2
3R	16104595	3R_16104595_SNP [dm3] 3R_20278873_SNP [dm6]	C	A	1.490e^-4	0.561	INTRON cic
2R	17987012	2R_17987012_SNP [dm3] 2R_22099507_SNP [dm6]	G	T	1.493e^-4	0.561	UTR_5_PRIME CG11073	TF binding site BDTNP1_TFBS_dl
2R	14011096	2R_14011096_SNP [dm3] 2R_18123591_SNP [dm6]	C	T	1.497e^-4	0.561	INTRON stau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12689417	3L_12689417_SNP [dm3] 3L_12696317_SNP [dm6]	C	T	1.504e^-4	0.561	INTRON mirr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	677500	3R_677500_SNP [dm3] 3R_4851778_SNP [dm6]	A	G	1.506e^-4	0.561	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sbb
2L	21894134	2L_21894134_SNP [dm3] 2L_21894134_SNP [dm6]	T	A	1.507e^-4	0.561	UPSTREAM CR43762 INTERGENIC	TF binding site mE1_TFBS_cad
3R	7875604	3R_7875604_SNP [dm3] 3R_12049882_SNP [dm6]	G	A	1.509e^-4	0.561	UPSTREAM CG14739 INTERGENIC
3R	526471	3R_526471_SNP [dm3] 3R_4700749_SNP [dm6]	C	A	1.511e^-4	0.561	INTRON CG43427
3L	10610526	3L_10610526_SNP [dm3] 3L_10617426_SNP [dm6]	C	G	1.516e^-4	0.561	INTERGENIC
X	17364792	X_17364792_INS [dm3] X_17470759_INS [dm6]	T	TTC	1.516e^-4	0.561	INTRON CG43658
3L	3119769	3L_3119769_SNP [dm3] 3L_3119769_SNP [dm6]	A	G	1.516e^-4	0.561	INTRON prominin-like
2R	13657713	2R_13657713_INS [dm3] 2R_17770208_INS [dm6]	A	ATGTA	1.516e^-4	0.561	UPSTREAM CG18635 DOWNSTREAM CG6362 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	13377203	3L_13377203_SNP [dm3] 3L_13384103_SNP [dm6]	T	C	1.532e^-4	0.564	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
X	17588279	X_17588279_DEL [dm3] X_17694246_DEL [dm6]	TT	T	1.533e^-4	0.564	INTRON chas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7930542	3L_7930542_SNP [dm3] 3L_7937442_SNP [dm6]	T	A	1.534e^-4	0.564	DOWNSTREAM Srp9 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	19037922	X_19037922_SNP [dm3] X_19143889_SNP [dm6]	C	A	1.539e^-4	0.565	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_sna
2L	18731745	2L_18731745_SNP [dm3] 2L_18731745_SNP [dm6]	C	T	1.545e^-4	0.566	UTR_5_PRIME CG10348 UPSTREAM CG10348 & 1 other
2R	16443413	2R_16443413_SNP [dm3] 2R_20555908_SNP [dm6]	G	A	1.550e^-4	0.566	UPSTREAM lms INTERGENIC
2L	16418299	2L_16418299_INS [dm3] 2L_16418299_INS [dm6]	A	ACTGA	1.553e^-4	0.566	UPSTREAM snoRNA:Me28S-A2958 INTRON CG5888
2R	15547241	2R_15547241_SNP [dm3] 2R_19659736_SNP [dm6]	A	G	1.559e^-4	0.566	DOWNSTREAM CG15125 & 1 other EXON CR44504	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17687571	3R_17687571_SNP [dm3] 3R_21861849_SNP [dm6]	T	C	1.560e^-4	0.566	UPSTREAM CR45644 EXON CR45645	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	12496803	2L_12496803_SNP [dm3] 2L_12496803_SNP [dm6]	C	T	1.560e^-4	0.566	NON_SYNONYMOUS_CODING t-cup INTRON bun	TF binding site mE1_TFBS_GATAe
3L	9557014	3L_9557014_DEL [dm3] 3L_9563914_DEL [dm6]	TCT	T	1.577e^-4	0.571	INTRON CG42673
3L	10291429	3L_10291429_SNP [dm3] 3L_10298329_SNP [dm6]	A	G	1.584e^-4	0.572	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16993661	2R_16993661_DEL [dm3] 2R_21106156_DEL [dm6]	GCTCA	G	1.588e^-4	0.573	INTRON ktub
3L	23932995	3L_23932995_SNP [dm3] 3L_23939895_SNP [dm6]	T	C	1.600e^-4	0.576	INTRON CG40470
3R	9476357	3R_9476357_SNP [dm3] 3R_13650635_SNP [dm6]	T	G	1.611e^-4	0.579	INTRON rin
2R	7137122	2R_7137122_SNP [dm3] 2R_11249617_SNP [dm6]	T	C	1.617e^-4	0.579	UTR_5_PRIME CG43112 UPSTREAM Or47a
3L	24381845	3L_24381845_DEL [dm3] 3L_24388745_DEL [dm6]	AC	A	1.617e^-4	0.579	INTRON nvd	transposable element DHGP
3R	12035817	3R_12035817_SNP [dm3] 3R_16210095_SNP [dm6]	T	A	1.623e^-4	0.579	UPSTREAM CR45638 DOWNSTREAM CR45637 INTERGENIC
3L	16648175	3L_16648175_SNP [dm3] 3L_16655075_SNP [dm6]	G	T	1.627e^-4	0.579	INTRON Baldspot
2R	16731462	2R_16731462_SNP [dm3] 2R_20843957_SNP [dm6]	T	C	1.629e^-4	0.579	INTERGENIC
3L	13376135	3L_13376135_SNP [dm3] 3L_13383035_SNP [dm6]	T	C	1.630e^-4	0.579	SYNONYMOUS_CODING ImpL1	TF binding site mE1_TFBS_cad
3L	6308490	3L_6308490_SNP [dm3] 3L_6315390_SNP [dm6]	T	G	1.636e^-4	0.58	INTERGENIC	transposable element FlyBase
2L	15207676	2L_15207676_SNP [dm3] 2L_15207676_SNP [dm6]	A	G	1.658e^-4	0.583	UPSTREAM CR44196 INTERGENIC
2R	10995362	2R_10995362_SNP [dm3] 2R_15107857_SNP [dm6]	C	T	1.669e^-4	0.583	INTERGENIC
3L	11236634	3L_11236634_SNP [dm3] 3L_11243534_SNP [dm6]	A	G	1.673e^-4	0.583	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	22031386	3L_22031386_SNP [dm3] 3L_22038286_SNP [dm6]	G	A	1.673e^-4	0.583	INTRON Oct-TyrR
X	5974206	X_5974206_INS [dm3] X_6080173_INS [dm6]	T	TT	1.680e^-4	0.583	INTRON CG4660	TF binding site BDTNP1_TFBS_dl
3L	24097257	3L_24097257_SNP [dm3] 3L_24104157_SNP [dm6]	A	G	1.684e^-4	0.583	INTRON Snap25	TF binding site mE1_TFBS_inv
3L	12880050	3L_12880050_SNP [dm3] 3L_12886950_SNP [dm6]	G	A	1.685e^-4	0.583	SYNONYMOUS_CODING CG14120	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18979827	2R_18979827_SNP [dm3] 2R_23092304_SNP [dm6]	C	T	1.685e^-4	0.583	INTRON CG9876
2L	21900778	2L_21900778_SNP [dm3] 2L_21900778_SNP [dm6]	A	T	1.685e^-4	0.583	INTERGENIC
X	18926909	X_18926909_SNP [dm3] X_19032876_SNP [dm6]	A	T	1.690e^-4	0.583	INTERGENIC
2L	4308074	2L_4308074_SNP [dm3] 2L_4308074_SNP [dm6]	T	C	1.694e^-4	0.583	SYNONYMOUS_CODING tutl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9133447	3L_9133447_SNP [dm3] 3L_9140347_SNP [dm6]	C	T	1.698e^-4	0.583	SYNONYMOUS_CODING nwk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20587585	3R_20587585_SNP [dm3] 3R_24761863_SNP [dm6]	A	G	1.700e^-4	0.583	INTRON AstA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11176370	2L_11176370_SNP [dm3] 2L_11176370_SNP [dm6]	T	C	1.701e^-4	0.583	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl
2R	12260941	2R_12260941_SNP [dm3] 2R_16373436_SNP [dm6]	T	C	1.701e^-4	0.583	INTERGENIC
3L	20967694	3L_20967694_SNP [dm3] 3L_20974594_SNP [dm6]	G	C	1.705e^-4	0.583	SYNONYMOUS_CODING CG33286
3L	24074107	3L_24074107_SNP [dm3] 3L_24081007_SNP [dm6]	G	A	1.708e^-4	0.583	INTRON Snap25
3R	19566264	3R_19566264_SNP [dm3] 3R_23740542_SNP [dm6]	G	A	1.722e^-4	0.583	INTRON Hmgcr
2R	10631893	2R_10631893_SNP [dm3] 2R_14744388_SNP [dm6]	A	C	1.733e^-4	0.583	INTRON CG12858
3L	5835074	3L_5835074_SNP [dm3] 3L_5841974_SNP [dm6]	G	A	1.735e^-4	0.583	INTRON vn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	11308509	3R_11308509_SNP [dm3] 3R_15482787_SNP [dm6]	A	G	1.736e^-4	0.583	SYNONYMOUS_CODING CG14870 UPSTREAM Rh6	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
3L	2782144	3L_2782144_SNP [dm3] 3L_2782144_SNP [dm6]	G	T	1.740e^-4	0.583	UPSTREAM pgant6 DOWNSTREAM mRpS35 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	18948147	2R_18948147_SNP [dm3] 2R_23060624_SNP [dm6]	C	T	1.740e^-4	0.583	SYNONYMOUS_CODING CG44252 DOWNSTREAM l_2_06496	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17700688	3R_17700688_INS [dm3] 3R_21874966_INS [dm6]	G	GAGTTG	1.745e^-4	0.583	UPSTREAM CG6656 DOWNSTREAM CG31178 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14155274	3L_14155274_SNP [dm3] 3L_14162174_SNP [dm6]	G	A	1.745e^-4	0.583	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10631896	2R_10631896_SNP [dm3] 2R_14744391_SNP [dm6]	G	C	1.750e^-4	0.583	INTRON CG12858
2R	15892400	2R_15892400_SNP [dm3] 2R_20004895_SNP [dm6]	C	G	1.751e^-4	0.583	NON_SYNONYMOUS_CODING CG16898	TF binding site mE1_TFBS_HSA
2R	10631898	2R_10631898_SNP [dm3] 2R_14744393_SNP [dm6]	T	A	1.751e^-4	0.583	INTRON CG12858
2R	18964721	2R_18964721_SNP [dm3] 2R_23077198_SNP [dm6]	C	G	1.754e^-4	0.583	SYNONYMOUS_CODING Art7 DOWNSTREAM CG3085	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8131506	2L_8131506_SNP [dm3] 2L_8131506_SNP [dm6]	C	T	1.759e^-4	0.583	SYNONYMOUS_CODING CG8668	TF binding site BDTNP1_TFBS_da
3L	17622645	3L_17622645_SNP [dm3] 3L_17629545_SNP [dm6]	T	A	1.760e^-4	0.583	INTRON CG7510
2R	7564258	2R_7564258_SNP [dm3] 2R_11676753_SNP [dm6]	C	T	1.760e^-4	0.583	SYNONYMOUS_CODING Tret1-2 INTRON Roc2	TF binding site mE1_TFBS_cad
2R	18027999	2R_18027999_SNP [dm3] 2R_22140494_SNP [dm6]	T	C	1.761e^-4	0.583	SYNONYMOUS_CODING gom INTRON a	TF binding site mE1_TFBS_chinmo
2L	4454802	2L_4454802_SNP [dm3] 2L_4454802_SNP [dm6]	A	T	1.763e^-4	0.583	NON_SYNONYMOUS_CODING CG15434 UPSTREAM CG15440 DOWNSTREAM Gs1l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
3L	14155283	3L_14155283_DEL [dm3] 3L_14162183_DEL [dm6]	TGT	T	1.765e^-4	0.583	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8876455	3L_8876455_SNP [dm3] 3L_8883355_SNP [dm6]	T	C	1.765e^-4	0.583	INTRON dally
3L	16273322	3L_16273322_SNP [dm3] 3L_16280222_SNP [dm6]	A	G	1.765e^-4	0.583	UPSTREAM CG13050 & 1 other DOWNSTREAM CG13049 INTERGENIC
3R	9842015	3R_9842015_SNP [dm3] 3R_14016293_SNP [dm6]	T	G	1.766e^-4	0.583	INTRON rdx
2R	8898205	2R_8898205_SNP [dm3] 2R_13010700_SNP [dm6]	C	A	1.767e^-4	0.583	INTERGENIC
3L	16751236	3L_16751236_SNP [dm3] 3L_16758136_SNP [dm6]	A	G	1.768e^-4	0.583	INTERGENIC
X	14393618	X_14393618_SNP [dm3] X_14499585_SNP [dm6]	A	T	1.773e^-4	0.584	INTERGENIC
2R	13657739	2R_13657739_SNP [dm3] 2R_17770234_SNP [dm6]	C	A	1.783e^-4	0.585	UPSTREAM CG18635 DOWNSTREAM CG6362 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	12758600	3R_12758600_SNP [dm3] 3R_16932878_SNP [dm6]	C	A	1.783e^-4	0.585	NON_SYNONYMOUS_CODING Abd-B INTRON Abd-B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18944624	2R_18944624_SNP [dm3] 2R_23057101_SNP [dm6]	C	T	1.791e^-4	0.586	INTRON CG44252
X	21896505	X_21896505_SNP [dm3] X_22494669_SNP [dm6]	G	A	1.797e^-4	0.587	INTRON l_1_G0196	transposable element FlyBase
2R	18947756	2R_18947756_SNP [dm3] 2R_23060233_SNP [dm6]	A	G	1.807e^-4	0.589	SYNONYMOUS_CODING CG44252	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	13184644	X_13184644_SNP [dm3] X_13290611_SNP [dm6]	G	C	1.809e^-4	0.589	SYNONYMOUS_CODING CG15744	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1651530	3L_1651530_SNP [dm3] 3L_1651530_SNP [dm6]	C	A	1.813e^-4	0.589	UTR_3_PRIME CG7967 DOWNSTREAM CG13920	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu
X	15321979	X_15321979_SNP [dm3] X_15427946_SNP [dm6]	T	C	1.815e^-4	0.589	INTRON Cngl
3L	22086834	3L_22086834_SNP [dm3] 3L_22093734_SNP [dm6]	A	G	1.824e^-4	0.589	INTERGENIC
2L	11693182	2L_11693182_INS [dm3] 2L_11693182_INS [dm6]	A	AA	1.830e^-4	0.589	INTERGENIC	TF binding site mE1_TFBS_inv
3L	13221064	3L_13221064_SNP [dm3] 3L_13227964_SNP [dm6]	A	T	1.831e^-4	0.589	UPSTREAM caps INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	8631317	3L_8631317_SNP [dm3] 3L_8638217_SNP [dm6]	A	T	1.832e^-4	0.589	INTRON Zasp66
2R	13657398	2R_13657398_SNP [dm3] 2R_17769893_SNP [dm6]	A	G	1.834e^-4	0.589	NON_SYNONYMOUS_CODING CG18635 DOWNSTREAM CG6362	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	9622731	2L_9622731_SNP [dm3] 2L_9622731_SNP [dm6]	T	A	1.838e^-4	0.589	UTR_3_PRIME GlcAT-S DOWNSTREAM GlcAT-S
3L	23256285	3L_23256285_SNP [dm3] 3L_23263185_SNP [dm6]	T	G	1.846e^-4	0.589	INTRON nAChRalpha4
3R	25542985	3R_25542985_SNP [dm3] 3R_29717263_SNP [dm6]	A	C	1.852e^-4	0.589	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	22000865	2L_22000865_SNP [dm3] 2L_22000865_SNP [dm6]	G	T	1.862e^-4	0.589	UPSTREAM CR44916 INTERGENIC
3R	13125097	3R_13125097_SNP [dm3] 3R_17299375_SNP [dm6]	A	T	1.864e^-4	0.589	INTERGENIC
X	13184020	X_13184020_SNP [dm3] X_13289987_SNP [dm6]	T	G	1.866e^-4	0.589	SYNONYMOUS_CODING CG15744	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	24687951	3R_24687951_SNP [dm3] 3R_28862229_SNP [dm6]	A	G	1.867e^-4	0.589	INTRON spg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	14686244	3L_14686244_SNP [dm3] 3L_14693144_SNP [dm6]	C	T	1.870e^-4	0.589	INTRON ome
3R	15551554	3R_15551554_SNP [dm3] 3R_19725832_SNP [dm6]	T	C	1.876e^-4	0.589	INTERGENIC
3L	7867054	3L_7867054_SNP [dm3] 3L_7873954_SNP [dm6]	G	A	1.880e^-4	0.589	INTRON CG32365
3R	26418491	3R_26418491_SNP [dm3] 3R_30592769_SNP [dm6]	A	G	1.883e^-4	0.589	DOWNSTREAM CG2246 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16647452	3L_16647452_DEL [dm3] 3L_16654352_DEL [dm6]	TTTG	A	1.892e^-4	0.589	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
2R	14086613	2R_14086613_SNP [dm3] 2R_18199108_SNP [dm6]	T	C	1.896e^-4	0.589	INTERGENIC
X	11809364	X_11809364_SNP [dm3] X_11915331_SNP [dm6]	G	C	1.896e^-4	0.589	INTRON pot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3922015	3L_3922015_SNP [dm3] 3L_3922015_SNP [dm6]	T	G	1.901e^-4	0.589	INTRON Eip63F-1
X	2544741	X_2544741_SNP [dm3] X_2650708_SNP [dm6]	C	A	1.901e^-4	0.589	INTRON sgg
3R	22772042	3R_22772042_SNP [dm3] 3R_26946320_SNP [dm6]	T	C	1.913e^-4	0.589	DOWNSTREAM tRNA:CR31071 INTRON CG14252	TF binding site mE1_TFBS_sens
2R	18944616	2R_18944616_SNP [dm3] 2R_23057093_SNP [dm6]	T	A	1.914e^-4	0.589	INTRON CG44252
2R	18946680	2R_18946680_SNP [dm3] 2R_23059157_SNP [dm6]	T	A	1.921e^-4	0.589	NON_SYNONYMOUS_CODING CG44252 DOWNSTREAM CG44253
2R	18946848	2R_18946848_SNP [dm3] 2R_23059325_SNP [dm6]	G	C	1.921e^-4	0.589	DOWNSTREAM CG44253 INTRON CG44252
2R	18902536	2R_18902536_SNP [dm3] 2R_23015013_SNP [dm6]	C	A	1.926e^-4	0.589	INTRON twi & 1 other	TF binding site BDTNP1_TFBS_twi
3R	25341543	3R_25341543_SNP [dm3] 3R_29515821_SNP [dm6]	C	A	1.927e^-4	0.589	UTR_5_PRIME CG2014 INTRON CG2014	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3L	5590574	3L_5590574_SNP [dm3] 3L_5597474_SNP [dm6]	G	A	1.927e^-4	0.589	DOWNSTREAM CG5150 INTERGENIC
3L	19335856	3L_19335856_SNP [dm3] 3L_19342756_SNP [dm6]	T	A	1.928e^-4	0.589	UTR_3_PRIME CG32206
2R	19017581	2R_19017581_SNP [dm3] 2R_23130058_SNP [dm6]	A	G	1.930e^-4	0.589	SYNONYMOUS_CODING CG3215
3L	4555099	3L_4555099_SNP [dm3] 3L_4555099_SNP [dm6]	A	G	1.931e^-4	0.589	SYNONYMOUS_CODING CG33777 UPSTREAM CG42540	TF binding site BDTNP1_TFBS_ftz
3L	4107967	3L_4107967_SNP [dm3] 3L_4107967_SNP [dm6]	G	A	1.936e^-4	0.589	UPSTREAM Ack & 1 other DOWNSTREAM Fit1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18946838	2R_18946838_SNP [dm3] 2R_23059315_SNP [dm6]	G	T	1.940e^-4	0.589	DOWNSTREAM CG44253 INTRON CG44252
X	8911381	X_8911381_SNP [dm3] X_9017348_SNP [dm6]	A	C	1.941e^-4	0.589	INTRON CR43836 & 1 other
2L	4265520	2L_4265520_SNP [dm3] 2L_4265520_SNP [dm6]	T	C	1.941e^-4	0.589	INTERGENIC
2R	8896544	2R_8896544_SNP [dm3] 2R_13009039_SNP [dm6]	G	A	1.944e^-4	0.589	INTERGENIC	TF binding site mE1_TFBS_cad
2L	18071348	2L_18071348_SNP [dm3] 2L_18071348_SNP [dm6]	C	A	1.945e^-4	0.589	INTERGENIC	TF binding site mE1_TFBS_inv
3R	26418690	3R_26418690_SNP [dm3] 3R_30592968_SNP [dm6]	G	C	1.948e^-4	0.589	DOWNSTREAM CG2246 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18275940	2R_18275940_SNP [dm3] 2R_22388435_SNP [dm6]	T	C	1.952e^-4	0.589	DOWNSTREAM CR44757 INTRON CG13506
3L	16734171	3L_16734171_SNP [dm3] 3L_16741071_SNP [dm6]	G	C	1.954e^-4	0.589	INTERGENIC
2L	18585510	2L_18585510_SNP [dm3] 2L_18585510_SNP [dm6]	A	C	1.957e^-4	0.589	INTRON Pde11
2R	18944570	2R_18944570_SNP [dm3] 2R_23057047_SNP [dm6]	G	A	1.958e^-4	0.589	INTRON CG44252
X	11606224	X_11606224_SNP [dm3] X_11712191_SNP [dm6]	G	A	1.961e^-4	0.589	SYNONYMOUS_CODING Amun	TF binding site mE1_TFBS_sens
3L	8921031	3L_8921031_SNP [dm3] 3L_8927931_SNP [dm6]	G	A	1.963e^-4	0.589	INTRON Tsp66E
3R	13036608	3R_13036608_SNP [dm3] 3R_17210886_SNP [dm6]	A	G	1.965e^-4	0.589	INTERGENIC
2R	10631889	2R_10631889_SNP [dm3] 2R_14744384_SNP [dm6]	G	T	1.965e^-4	0.589	INTRON CG12858
2R	7136593	2R_7136593_SNP [dm3] 2R_11249088_SNP [dm6]	G	C	1.968e^-4	0.589	UPSTREAM CG43112 DOWNSTREAM CG34227 INTERGENIC
3L	8717305	3L_8717305_SNP [dm3] 3L_8724205_SNP [dm6]	G	A	1.970e^-4	0.589	SYNONYMOUS_CODING CG6511
2L	10781063	2L_10781063_DEL [dm3] 2L_10781063_DEL [dm6]	CGCCAC	C	1.974e^-4	0.589	INTRON CG31869
3R	26107904	3R_26107904_SNP [dm3] 3R_30282182_SNP [dm6]	G	T	1.981e^-4	0.589	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	17219940	X_17219940_SNP [dm3] X_17325907_SNP [dm6]	G	T	1.983e^-4	0.589	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	16963248	2R_16963248_SNP [dm3] 2R_21075743_SNP [dm6]	T	G	1.984e^-4	0.589	UPSTREAM Treh INTRON Treh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	10644211	2L_10644211_SNP [dm3] 2L_10644211_SNP [dm6]	A	T	1.988e^-4	0.589	DOWNSTREAM CG31872 INTRON CG18284
2R	9372392	2R_9372392_SNP [dm3] 2R_13484887_SNP [dm6]	T	C	1.989e^-4	0.589	SYNONYMOUS_CODING cbc UPSTREAM cid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25542972	3R_25542972_SNP [dm3] 3R_29717250_SNP [dm6]	C	T	1.990e^-4	0.589	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	18975972	2R_18975972_SNP [dm3] 2R_23088449_SNP [dm6]	C	A	1.997e^-4	0.589	DOWNSTREAM CG13538 INTERGENIC
3L	8157993	3L_8157993_SNP [dm3] 3L_8164893_SNP [dm6]	T	C	2.000e^-4	0.589	UPSTREAM CG13675 INTRON CG13675
2L	6090960	2L_6090960_SNP [dm3] 2L_6090960_SNP [dm6]	A	G	2.001e^-4	0.589	UPSTREAM Kr-h1 & 1 other INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	18754377	2L_18754377_SNP [dm3] 2L_18754377_SNP [dm6]	C	A	2.001e^-4	0.589	INTERGENIC
3R	22769495	3R_22769495_SNP [dm3] 3R_26943773_SNP [dm6]	A	T	2.004e^-4	0.589	INTRON sda
3L	13376183	3L_13376183_SNP [dm3] 3L_13383083_SNP [dm6]	C	T	2.010e^-4	0.59	SYNONYMOUS_CODING ImpL1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18758743	2L_18758743_SNP [dm3] 2L_18758743_SNP [dm6]	T	A	2.026e^-4	0.592	INTERGENIC
3L	2339049	3L_2339049_SNP [dm3] 3L_2339049_SNP [dm6]	G	A	2.028e^-4	0.592	INTRON MsR1
2R	14761204	2R_14761204_SNP [dm3] 2R_18873699_SNP [dm6]	C	T	2.036e^-4	0.592	INTERGENIC
3L	23410538	3L_23410538_SNP [dm3] 3L_23417438_SNP [dm6]	T	C	2.040e^-4	0.592	INTERGENIC	transposable element FlyBase
3L	23592176	3L_23592176_SNP [dm3] 3L_23599076_SNP [dm6]	T	C	2.046e^-4	0.592	INTRON AGO3	transposable element FlyBase
3R	17286759	3R_17286759_DEL [dm3] 3R_21461037_DEL [dm6]	TT	T	2.047e^-4	0.592	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9654295	2L_9654295_SNP [dm3] 2L_9654295_SNP [dm6]	C	T	2.052e^-4	0.592	SYNONYMOUS_CODING Apoltp
3R	13036611	3R_13036611_SNP [dm3] 3R_17210889_SNP [dm6]	A	G	2.054e^-4	0.592	INTERGENIC
2L	16576748	2L_16576748_SNP [dm3] 2L_16576748_SNP [dm6]	G	A	2.062e^-4	0.592	INTRON CG42389
3R	9840665	3R_9840665_SNP [dm3] 3R_14014943_SNP [dm6]	G	C	2.062e^-4	0.592	INTRON rdx
X	17718102	X_17718102_SNP [dm3] X_17824069_SNP [dm6]	T	C	2.063e^-4	0.592	SYNONYMOUS_CODING Socs16D	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19670812	3R_19670812_INS [dm3] 3R_23845090_INS [dm6]	C	CT	2.069e^-4	0.592	INTRON CG34355	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
X	8902510	X_8902510_SNP [dm3] X_9008477_SNP [dm6]	C	T	2.071e^-4	0.592	INTRON rdgA & 1 other
3L	18817791	3L_18817791_SNP [dm3] 3L_18824691_SNP [dm6]	T	A	2.072e^-4	0.592	INTRON Cat
3L	23888428	3L_23888428_SNP [dm3] 3L_23895328_SNP [dm6]	C	A	2.076e^-4	0.592	INTRON CG40470
2L	9610339	2L_9610339_SNP [dm3] 2L_9610339_SNP [dm6]	C	T	2.077e^-4	0.592	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad
3L	19386332	3L_19386332_DEL [dm3] 3L_19393232_DEL [dm6]	TTCAGT	T	2.079e^-4	0.592	INTRON CG32206
X	19897009	X_19897009_DEL [dm3] X_20002976_DEL [dm6]	GTGG	G	2.082e^-4	0.592	UPSTREAM CG17003 INTERGENIC
3R	9020974	3R_9020974_SNP [dm3] 3R_13195252_SNP [dm6]	A	T	2.085e^-4	0.592	INTERGENIC
3L	6750605	3L_6750605_SNP [dm3] 3L_6757505_SNP [dm6]	C	G	2.086e^-4	0.592	INTRON CG32392	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	7920329	X_7920329_SNP [dm3] X_8026296_SNP [dm6]	C	G	2.096e^-4	0.592	UTR_3_PRIME Tbh
2R	1673858	2R_1673858_SNP [dm3] 2R_5786353_SNP [dm6]	A	G	2.098e^-4	0.592	INTERGENIC	transposable element FlyBase
3L	24221506	3L_24221506_SNP [dm3] 3L_24228406_SNP [dm6]	C	A	2.099e^-4	0.592	INTRON Snap25
3R	5742584	3R_5742584_SNP [dm3] 3R_9916862_SNP [dm6]	C	T	2.099e^-4	0.592	INTRON Glut4EF
3R	10713369	3R_10713369_SNP [dm3] 3R_14887647_SNP [dm6]	T	A	2.106e^-4	0.592	UTR_3_PRIME CG33331 INTRON CG33332	TF binding site mE1_TFBS_inv
2R	11751680	2R_11751680_SNP [dm3] 2R_15864175_SNP [dm6]	G	T	2.107e^-4	0.592	DOWNSTREAM Rif1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10622249	2R_10622249_SNP [dm3] 2R_14734744_SNP [dm6]	C	A	2.114e^-4	0.592	INTERGENIC
2R	15547233	2R_15547233_SNP [dm3] 2R_19659728_SNP [dm6]	A	C	2.115e^-4	0.592	DOWNSTREAM CG15125 & 1 other EXON CR44504	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12123607	2L_12123607_SNP [dm3] 2L_12123607_SNP [dm6]	G	A	2.115e^-4	0.592	INTRON CG17211
X	7118191	X_7118191_SNP [dm3] X_7224158_SNP [dm6]	C	T	2.115e^-4	0.592	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3333386	2R_3333386_SNP [dm3] 2R_7445881_SNP [dm6]	T	C	2.122e^-4	0.592	UPSTREAM kappaB-Ras & 1 other DOWNSTREAM fa2h INTERGENIC	TF binding site mE1_TFBS_ttk
3R	23632225	3R_23632225_SNP [dm3] 3R_27806503_SNP [dm6]	A	G	2.122e^-4	0.592	INTRON CG34353
2R	10622250	2R_10622250_SNP [dm3] 2R_14734745_SNP [dm6]	A	T	2.124e^-4	0.592	INTERGENIC
2L	4294524	2L_4294524_SNP [dm3] 2L_4294524_SNP [dm6]	C	G	2.131e^-4	0.592	INTRON tutl
X	3205223	X_3205223_DEL [dm3] X_3311190_DEL [dm6]	AA	A	2.133e^-4	0.592	INTRON dnc
X	5180680	X_5180680_SNP [dm3] X_5286647_SNP [dm6]	G	A	2.134e^-4	0.592	INTERGENIC
X	17229329	X_17229329_SNP [dm3] X_17335296_SNP [dm6]	T	A	2.135e^-4	0.592	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	17210042	X_17210042_SNP [dm3] X_17316009_SNP [dm6]	A	T	2.136e^-4	0.592	INTRON B-H2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3L	14319521	3L_14319521_SNP [dm3] 3L_14326421_SNP [dm6]	A	C	2.141e^-4	0.592	UPSTREAM CR45025 INTRON fz
2L	8187244	2L_8187244_SNP [dm3] 2L_8187244_SNP [dm6]	T	G	2.145e^-4	0.592	SYNONYMOUS_CODING Piezo
3R	16998842	3R_16998842_SNP [dm3] 3R_21173120_SNP [dm6]	C	T	2.149e^-4	0.592	INTRON SNF4Agamma	TF binding site mE1_TFBS_HSA
2R	14821929	2R_14821929_SNP [dm3] 2R_18934424_SNP [dm6]	G	A	2.157e^-4	0.592	INTRON sano
3L	9583290	3L_9583290_SNP [dm3] 3L_9590190_SNP [dm6]	A	T	2.159e^-4	0.592	INTRON CG42673
3L	5881640	3L_5881640_DEL [dm3] 3L_5888540_DEL [dm6]	AA	A	2.159e^-4	0.592	INTERGENIC
2R	12260877	2R_12260877_SNP [dm3] 2R_16373372_SNP [dm6]	A	G	2.162e^-4	0.592	INTERGENIC
3R	12357815	3R_12357815_SNP [dm3] 3R_16532093_SNP [dm6]	T	G	2.166e^-4	0.592	INTRON CG42342
3R	9865823	3R_9865823_SNP [dm3] 3R_14040101_SNP [dm6]	C	T	2.169e^-4	0.592	INTERGENIC
3L	1177567	3L_1177567_SNP [dm3] 3L_1177567_SNP [dm6]	T	C	2.170e^-4	0.592	UPSTREAM bab2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	25626717	3R_25626717_SNP [dm3] 3R_29800995_SNP [dm6]	G	A	2.174e^-4	0.592	UTR_3_PRIME Ice DOWNSTREAM CG7834	TF binding site mE1_TFBS_cad
3L	7823438	3L_7823438_SNP [dm3] 3L_7830338_SNP [dm6]	T	C	2.178e^-4	0.592	INTRON Pdp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	7137129	2R_7137129_SNP [dm3] 2R_11249624_SNP [dm6]	C	A	2.180e^-4	0.592	UTR_5_PRIME CG43112 UPSTREAM Or47a
2R	13657749	2R_13657749_SNP [dm3] 2R_17770244_SNP [dm6]	G	A	2.182e^-4	0.592	UPSTREAM CG18635 DOWNSTREAM CG6362 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10862696	3L_10862696_INS [dm3] 3L_10869596_INS [dm6]	C	CT	2.191e^-4	0.593	UPSTREAM tna INTRON tna
2L	14448422	2L_14448422_SNP [dm3] 2L_14448422_SNP [dm6]	C	A	2.193e^-4	0.593	EXON CR45726	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	22031552	3L_22031552_SNP [dm3] 3L_22038452_SNP [dm6]	G	A	2.196e^-4	0.593	INTRON Oct-TyrR
2R	10622258	2R_10622258_SNP [dm3] 2R_14734753_SNP [dm6]	T	C	2.197e^-4	0.593	INTERGENIC
3L	9557521	3L_9557521_SNP [dm3] 3L_9564421_SNP [dm6]	G	T	2.202e^-4	0.593	INTRON CG42673	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	13930387	3R_13930387_SNP [dm3] 3R_18104665_SNP [dm6]	T	C	2.208e^-4	0.593	INTRON sr
3L	24292597	3L_24292597_SNP [dm3] 3L_24299497_SNP [dm6]	C	A	2.211e^-4	0.593	DOWNSTREAM Snap25 INTERGENIC
2L	2139142	2L_2139142_SNP [dm3] 2L_2139142_SNP [dm6]	G	A	2.211e^-4	0.593	INTRON tho2
3R	9741211	3R_9741211_SNP [dm3] 3R_13915489_SNP [dm6]	C	T	2.213e^-4	0.593	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	24276112	3L_24276112_SNP [dm3] 3L_24283012_SNP [dm6]	G	T	2.225e^-4	0.595	INTRON Snap25
X	8239042	X_8239042_SNP [dm3] X_8345009_SNP [dm6]	T	C	2.227e^-4	0.595	INTRON nAChRalpha3
2R	17496791	2R_17496791_SNP [dm3] 2R_21609286_SNP [dm6]	A	G	2.231e^-4	0.595	DOWNSTREAM CR43243 INTRON CG15673
3L	11176076	3L_11176076_SNP [dm3] 3L_11182976_SNP [dm6]	G	A	2.236e^-4	0.595	INTRON GlcAT-P
2R	17757683	2R_17757683_SNP [dm3] 2R_21870178_SNP [dm6]	A	G	2.237e^-4	0.595	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9618021	2L_9618021_SNP [dm3] 2L_9618021_SNP [dm6]	G	A	2.249e^-4	0.595	INTRON GlcAT-S
X	9893027	X_9893027_SNP [dm3] X_9998994_SNP [dm6]	T	C	2.249e^-4	0.595	INTRON CG32694
3R	11402060	3R_11402060_SNP [dm3] 3R_15576338_SNP [dm6]	A	T	2.250e^-4	0.595	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	23421940	3L_23421940_SNP [dm3] 3L_23428840_SNP [dm6]	G	A	2.251e^-4	0.595	INTERGENIC
3L	16733887	3L_16733887_SNP [dm3] 3L_16740787_SNP [dm6]	G	A	2.266e^-4	0.595	INTERGENIC
3L	9583264	3L_9583264_DEL [dm3] 3L_9590164_DEL [dm6]	GTTCCGAAAAACTTTAAACA...	G	2.266e^-4	0.595	INTRON CG42673
X	18336604	X_18336604_SNP [dm3] X_18442571_SNP [dm6]	A	T	2.267e^-4	0.595	DOWNSTREAM CG32547 INTERGENIC
2L	10644238	2L_10644238_SNP [dm3] 2L_10644238_SNP [dm6]	A	G	2.270e^-4	0.595	DOWNSTREAM CG31872 INTRON CG18284
3L	23946254	3L_23946254_SNP [dm3] 3L_23953154_SNP [dm6]	C	A	2.273e^-4	0.595	INTRON CG40470
3L	23426778	3L_23426778_SNP [dm3] 3L_23433678_SNP [dm6]	T	C	2.273e^-4	0.595	INTERGENIC	transposable element FlyBase
2R	9353736	2R_9353736_SNP [dm3] 2R_13466231_SNP [dm6]	C	T	2.274e^-4	0.595	INTRON arr
3L	12302010	3L_12302010_SNP [dm3] 3L_12308910_SNP [dm6]	A	G	2.278e^-4	0.595	INTERGENIC
3R	9552344	3R_9552344_SNP [dm3] 3R_13726622_SNP [dm6]	A	T	2.278e^-4	0.595	INTRON CG34383
3R	13206290	3R_13206290_SNP [dm3] 3R_17380568_SNP [dm6]	G	A	2.281e^-4	0.595	INTRON Brf & 1 other
X	20677084	X_20677084_SNP [dm3] X_20806057_SNP [dm6]	G	T	2.286e^-4	0.595	INTRON shakB
2R	12328310	2R_12328310_DEL [dm3] 2R_16440805_DEL [dm6]	AG	A	2.288e^-4	0.595	INTERGENIC
3L	3926680	3L_3926680_SNP [dm3] 3L_3926680_SNP [dm6]	C	T	2.302e^-4	0.598	INTRON Eip63F-1
2L	1785705	2L_1785705_SNP [dm3] 2L_1785705_SNP [dm6]	T	G	2.305e^-4	0.598	DOWNSTREAM Gr22e INTERGENIC
3R	8722182	3R_8722182_SNP [dm3] 3R_12896460_SNP [dm6]	G	A	2.315e^-4	0.6	INTERGENIC
3L	9133501	3L_9133501_SNP [dm3] 3L_9140401_SNP [dm6]	A	G	2.320e^-4	0.6	SYNONYMOUS_CODING nwk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17307298	2R_17307298_SNP [dm3] 2R_21419793_SNP [dm6]	A	G	2.322e^-4	0.6	INTRON Sdc
2L	14255654	2L_14255654_SNP [dm3] 2L_14255654_SNP [dm6]	G	A	2.327e^-4	0.6	INTERGENIC
3R	14032698	3R_14032698_SNP [dm3] 3R_18206976_SNP [dm6]	C	A	2.328e^-4	0.6	INTRON CG7985
3L	12378611	3L_12378611_SNP [dm3] 3L_12385511_SNP [dm6]	G	T	2.342e^-4	0.603	INTRON Ncc69
3L	15390849	3L_15390849_SNP [dm3] 3L_15397749_SNP [dm6]	G	A	2.349e^-4	0.604	INTERGENIC
X	18925607	X_18925607_SNP [dm3] X_19031574_SNP [dm6]	C	T	2.365e^-4	0.605	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14435483	2R_14435483_SNP [dm3] 2R_18547978_SNP [dm6]	G	A	2.368e^-4	0.605	UTR_3_PRIME Rgk2
3R	17056240	3R_17056240_SNP [dm3] 3R_21230518_SNP [dm6]	C	T	2.373e^-4	0.605	SYNONYMOUS_CODING e	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	16963251	2R_16963251_SNP [dm3] 2R_21075746_SNP [dm6]	C	T	2.374e^-4	0.605	UPSTREAM Treh INTRON Treh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	6369628	3R_6369628_SNP [dm3] 3R_10543906_SNP [dm6]	G	A	2.375e^-4	0.605	INTRON hth
3L	22780600	3L_22780600_SNP [dm3] 3L_22787500_SNP [dm6]	G	A	2.376e^-4	0.605	UTR_3_PRIME SPoCk UPSTREAM CG14448
2L	14334153	2L_14334153_SNP [dm3] 2L_14334153_SNP [dm6]	T	A	2.380e^-4	0.605	UPSTREAM CG33090 DOWNSTREAM ms_2_34Fe INTERGENIC
3R	25299426	3R_25299426_SNP [dm3] 3R_29473704_SNP [dm6]	T	A	2.382e^-4	0.605	INTRON Ptp99A
3R	12045566	3R_12045566_SNP [dm3] 3R_16219844_SNP [dm6]	C	T	2.392e^-4	0.607	INTERGENIC
2L	3276132	2L_3276132_SNP [dm3] 2L_3276132_SNP [dm6]	T	G	2.398e^-4	0.607	SYNONYMOUS_CODING CG3332	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14324958	3L_14324958_SNP [dm3] 3L_14331858_SNP [dm6]	G	A	2.399e^-4	0.607	INTRON fz
3L	12307207	3L_12307207_SNP [dm3] 3L_12314107_SNP [dm6]	G	T	2.412e^-4	0.609	INTERGENIC	regulatory region REDfly_CRMs
3R	9552186	3R_9552186_SNP [dm3] 3R_13726464_SNP [dm6]	A	G	2.412e^-4	0.609	INTRON CG34383
3R	4395459	3R_4395459_SNP [dm3] 3R_8569737_SNP [dm6]	C	T	2.414e^-4	0.609	DOWNSTREAM Cenp-C INTERGENIC
3L	11393028	3L_11393028_SNP [dm3] 3L_11399928_SNP [dm6]	G	T	2.417e^-4	0.609	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	10644174	2L_10644174_SNP [dm3] 2L_10644174_SNP [dm6]	G	A	2.430e^-4	0.61	DOWNSTREAM CG31872 INTRON CG18284
2R	16993629	2R_16993629_SNP [dm3] 2R_21106124_SNP [dm6]	T	A	2.434e^-4	0.61	INTRON ktub
3L	13252508	3L_13252508_SNP [dm3] 3L_13259408_SNP [dm6]	G	A	2.437e^-4	0.61	INTRON caps
3L	7194053	3L_7194053_SNP [dm3] 3L_7200953_SNP [dm6]	T	G	2.440e^-4	0.61	INTERGENIC
3R	24912620	3R_24912620_INS [dm3] 3R_29086898_INS [dm6]	C	CTTC	2.444e^-4	0.61	INTRON CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_sens mE1_TFBS_Trl
3L	15513731	3L_15513731_SNP [dm3] 3L_15520631_SNP [dm6]	T	A	2.444e^-4	0.61	NON_SYNONYMOUS_CODING yellow-k EXON CR43159	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12389728	2L_12389728_DEL [dm3] 2L_12389728_DEL [dm6]	TT	T	2.444e^-4	0.61	INTRON bru-2
X	2996987	X_2996987_SNP [dm3] X_3102954_SNP [dm6]	A	C	2.447e^-4	0.61	INTRON kirre
2L	14255720	2L_14255720_SNP [dm3] 2L_14255720_SNP [dm6]	T	C	2.457e^-4	0.611	INTERGENIC
3R	24912345	3R_24912345_SNP [dm3] 3R_29086623_SNP [dm6]	G	A	2.458e^-4	0.611	INTRON CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc
3R	13125943	3R_13125943_SNP [dm3] 3R_17300221_SNP [dm6]	G	T	2.461e^-4	0.611	INTERGENIC
X	15864645	X_15864645_SNP [dm3] X_15970612_SNP [dm6]	C	T	2.468e^-4	0.611	INTRON mmd
X	4339635	X_4339635_SNP [dm3] X_4445602_SNP [dm6]	T	A	2.468e^-4	0.611	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	12480725	3L_12480725_SNP [dm3] 3L_12487625_SNP [dm6]	G	T	2.475e^-4	0.611	INTRON CG10660	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14011169	2R_14011169_SNP [dm3] 2R_18123664_SNP [dm6]	C	T	2.476e^-4	0.611	INTRON stau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25993034	3R_25993034_SNP [dm3] 3R_30167312_SNP [dm6]	T	G	2.484e^-4	0.612	UPSTREAM CG31030 INTRON CG31028
3L	6695846	3L_6695846_SNP [dm3] 3L_6702746_SNP [dm6]	A	T	2.492e^-4	0.613	INTRON SP1173	TF binding site BDTNP1_TFBS_twi
3L	24273690	3L_24273690_SNP [dm3] 3L_24280590_SNP [dm6]	G	T	2.498e^-4	0.613	INTRON Snap25
2L	8786460	2L_8786460_SNP [dm3] 2L_8786460_SNP [dm6]	T	A	2.502e^-4	0.613	INTERGENIC
3R	4014587	3R_4014587_SNP [dm3] 3R_8188865_SNP [dm6]	T	A	2.503e^-4	0.613	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	11267588	3R_11267588_SNP [dm3] 3R_15441866_SNP [dm6]	C	T	2.506e^-4	0.613	UTR_3_PRIME Act88F DOWNSTREAM AdamTS-A	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	10754790	3R_10754790_SNP [dm3] 3R_14929068_SNP [dm6]	A	T	2.508e^-4	0.613	INTERGENIC
2L	9655055	2L_9655055_SNP [dm3] 2L_9655055_SNP [dm6]	T	A	2.514e^-4	0.614	INTRON Apoltp
2L	11699665	2L_11699665_SNP [dm3] 2L_11699665_SNP [dm6]	G	A	2.516e^-4	0.614	INTERGENIC
2L	10720425	2L_10720425_SNP [dm3] 2L_10720425_SNP [dm6]	G	A	2.520e^-4	0.614	INTERGENIC
2R	16966275	2R_16966275_SNP [dm3] 2R_21078770_SNP [dm6]	T	C	2.524e^-4	0.614	INTRON Treh
2L	21900248	2L_21900248_SNP [dm3] 2L_21900248_SNP [dm6]	T	C	2.529e^-4	0.614	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	13082423	3R_13082423_SNP [dm3] 3R_17256701_SNP [dm6]	A	G	2.533e^-4	0.614	INTRON beat-IIb
2R	18944772	2R_18944772_SNP [dm3] 2R_23057249_SNP [dm6]	C	T	2.539e^-4	0.614	UPSTREAM CG44252 & 1 other INTRON CG44252
3L	15611748	3L_15611748_SNP [dm3] 3L_15618648_SNP [dm6]	A	T	2.541e^-4	0.614	INTRON comm3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	23549464	3R_23549464_SNP [dm3] 3R_27723742_SNP [dm6]	A	T	2.546e^-4	0.614	INTERGENIC
2L	12651687	2L_12651687_SNP [dm3] 2L_12651687_SNP [dm6]	G	C	2.548e^-4	0.614	INTERGENIC
2L	14661197	2L_14661197_SNP [dm3] 2L_14661197_SNP [dm6]	T	C	2.553e^-4	0.614	INTRON osp
2R	14011147	2R_14011147_SNP [dm3] 2R_18123642_SNP [dm6]	A	G	2.553e^-4	0.614	INTRON stau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11863394	3R_11863394_INS [dm3] 3R_16037672_INS [dm6]	T	TGT	2.557e^-4	0.614	INTRON pnr
2R	13858312	2R_13858312_SNP [dm3] 2R_17970807_SNP [dm6]	T	A	2.558e^-4	0.614	INTERGENIC
3R	18132870	3R_18132870_SNP [dm3] 3R_22307148_SNP [dm6]	A	G	2.560e^-4	0.614	INTERGENIC
3L	6981819	3L_6981819_SNP [dm3] 3L_6988719_SNP [dm6]	C	T	2.576e^-4	0.616	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9728641	3L_9728641_SNP [dm3] 3L_9735541_SNP [dm6]	A	T	2.577e^-4	0.616	INTRON CG42268
2L	1450828	2L_1450828_SNP [dm3] 2L_1450828_SNP [dm6]	C	T	2.579e^-4	0.616	INTERGENIC
2L	16776825	2L_16776825_SNP [dm3] 2L_16776825_SNP [dm6]	A	C	2.581e^-4	0.616	INTRON Mhc
2L	18589939	2L_18589939_SNP [dm3] 2L_18589939_SNP [dm6]	A	G	2.590e^-4	0.617	UPSTREAM CG15160 INTRON Pde11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	9989227	X_9989227_SNP [dm3] X_10095194_SNP [dm6]	A	C	2.595e^-4	0.617	INTRON RhoU
3R	9900258	3R_9900258_DEL [dm3] 3R_14074536_DEL [dm6]	TT	T	2.598e^-4	0.617	INTRON foxo
3R	5742631	3R_5742631_SNP [dm3] 3R_9916909_SNP [dm6]	G	C	2.598e^-4	0.617	INTRON Glut4EF	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9747974	3R_9747974_DEL [dm3] 3R_13922252_DEL [dm6]	CCCCGCACCACGCAT...	A	2.608e^-4	0.618	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6247893	3R_6247893_SNP [dm3] 3R_10422171_SNP [dm6]	C	A	2.615e^-4	0.618	INTERGENIC
3L	24319213	3L_24319213_SNP [dm3] 3L_24326113_SNP [dm6]	C	A	2.615e^-4	0.618	INTRON nvd
3R	23628711	3R_23628711_SNP [dm3] 3R_27802989_SNP [dm6]	G	A	2.618e^-4	0.618	INTRON CG34353
3R	3735389	3R_3735389_DEL [dm3] 3R_7909667_DEL [dm6]	CAA	C	2.623e^-4	0.619	UTR_3_PRIME Taf7 & 1 other DOWNSTREAM Taf7
3L	10133272	3L_10133272_SNP [dm3] 3L_10140172_SNP [dm6]	C	G	2.630e^-4	0.62	DOWNSTREAM dpr6 INTERGENIC
3L	15073690	3L_15073690_INS [dm3] 3L_15080590_INS [dm6]	A	ATTTA	2.640e^-4	0.62	INTRON cp309	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	24263511	3L_24263511_SNP [dm3] 3L_24270411_SNP [dm6]	T	G	2.644e^-4	0.62	INTRON Snap25
3L	23058027	3L_23058027_DEL [dm3] 3L_23064927_DEL [dm6]	CGACA	C	2.650e^-4	0.62	INTERGENIC	transposable element FlyBase
3R	1902856	3R_1902856_SNP [dm3] 3R_6077134_SNP [dm6]	G	C	2.651e^-4	0.62	NON_SYNONYMOUS_CODING Or83c SPLICE_SITE_REGION Or83c
3R	9840977	3R_9840977_SNP [dm3] 3R_14015255_SNP [dm6]	A	G	2.654e^-4	0.62	INTRON rdx
2R	6538311	2R_6538311_SNP [dm3] 2R_10650806_SNP [dm6]	C	T	2.656e^-4	0.62	DOWNSTREAM CG12934 INTERGENIC
X	10417351	X_10417351_SNP [dm3] X_10523318_SNP [dm6]	C	G	2.661e^-4	0.62	SYNONYMOUS_CODING spri INTRON spri	TF binding site BDTNP1_TFBS_sna
3R	4762231	3R_4762231_SNP [dm3] 3R_8936509_SNP [dm6]	C	T	2.662e^-4	0.62	NON_SYNONYMOUS_CODING osk
X	8910929	X_8910929_DEL [dm3] X_9016896_DEL [dm6]	TT	T	2.663e^-4	0.62	INTRON CR43836 & 1 other
3R	22779557	3R_22779557_SNP [dm3] 3R_26953835_SNP [dm6]	T	A	2.666e^-4	0.62	UPSTREAM CG6330 INTRON CG6330	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	23294962	3L_23294962_SNP [dm3] 3L_23301862_SNP [dm6]	T	A	2.667e^-4	0.62	INTERGENIC	transposable element FlyBase
3L	12241914	3L_12241914_SNP [dm3] 3L_12248814_SNP [dm6]	G	A	2.672e^-4	0.62	INTRON app
3L	13377128	3L_13377128_SNP [dm3] 3L_13384028_SNP [dm6]	A	G	2.674e^-4	0.62	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
2R	18954622	2R_18954622_SNP [dm3] 2R_23067099_SNP [dm6]	A	T	2.688e^-4	0.622	UTR_3_PRIME PPO3 UPSTREAM l_2_k09913	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	27430242	3R_27430242_SNP [dm3] 3R_31604520_SNP [dm6]	G	A	2.702e^-4	0.623	INTRON CycG	TF binding site mE1_TFBS_sens
3L	14106948	3L_14106948_SNP [dm3] 3L_14113848_SNP [dm6]	A	T	2.704e^-4	0.623	INTRON Sox21b
3R	4714620	3R_4714620_SNP [dm3] 3R_8888898_SNP [dm6]	T	A	2.709e^-4	0.623	INTRON pyd
2L	10644251	2L_10644251_SNP [dm3] 2L_10644251_SNP [dm6]	C	T	2.719e^-4	0.623	DOWNSTREAM CG31872 INTRON CG18284
3L	16749549	3L_16749549_SNP [dm3] 3L_16756449_SNP [dm6]	G	A	2.721e^-4	0.623	DOWNSTREAM CG42852 INTERGENIC
3R	13091664	3R_13091664_SNP [dm3] 3R_17265942_SNP [dm6]	T	A	2.726e^-4	0.623	UPSTREAM beat-IIb DOWNSTREAM CG44257 INTERGENIC
3L	23236931	3L_23236931_DEL [dm3] 3L_23243831_DEL [dm6]	AATAAGA	G	2.728e^-4	0.623	INTRON nAChRalpha4	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11861591	3R_11861591_SNP [dm3] 3R_16035869_SNP [dm6]	C	A	2.730e^-4	0.623	INTRON pnr
X	6152586	X_6152586_SNP [dm3] X_6258553_SNP [dm6]	A	C	2.732e^-4	0.623	DOWNSTREAM Spx INTRON schlank	TF binding site mE1_TFBS_sens
3R	9483567	3R_9483567_SNP [dm3] 3R_13657845_SNP [dm6]	G	T	2.732e^-4	0.623	UTR_3_PRIME Hrb87F INTRON Hrb87F
3L	7930365	3L_7930365_SNP [dm3] 3L_7937265_SNP [dm6]	G	T	2.736e^-4	0.623	DOWNSTREAM Srp9 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	9023572	3R_9023572_SNP [dm3] 3R_13197850_SNP [dm6]	G	A	2.743e^-4	0.623	INTERGENIC
3R	9023378	3R_9023378_SNP [dm3] 3R_13197656_SNP [dm6]	T	G	2.744e^-4	0.623	INTERGENIC
X	11347130	X_11347130_SNP [dm3] X_11453097_SNP [dm6]	T	C	2.749e^-4	0.623	INTRON Evi5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	9271701	3R_9271701_SNP [dm3] 3R_13445979_SNP [dm6]	A	G	2.754e^-4	0.623	INTERGENIC
3R	14838998	3R_14838998_SNP [dm3] 3R_19013276_SNP [dm6]	C	G	2.759e^-4	0.623	SYNONYMOUS_CODING gukh	TF binding site mE1_TFBS_cad
3L	1113891	3L_1113891_SNP [dm3] 3L_1113891_SNP [dm6]	C	T	2.762e^-4	0.623	INTERGENIC	TF binding site mE1_TFBS_cad
3R	13127567	3R_13127567_SNP [dm3] 3R_17301845_SNP [dm6]	A	G	2.763e^-4	0.623	INTERGENIC
2R	18990462	2R_18990462_SNP [dm3] 2R_23102939_SNP [dm6]	A	G	2.764e^-4	0.623	SYNONYMOUS_CODING Gr59c
3R	6257443	3R_6257443_SNP [dm3] 3R_10431721_SNP [dm6]	A	C	2.775e^-4	0.623	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8259853	2R_8259853_SNP [dm3] 2R_12372348_SNP [dm6]	C	T	2.777e^-4	0.623	NON_SYNONYMOUS_CODING CG13160	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19018094	2R_19018094_INS [dm3] 2R_23130571_INS [dm6]	C	CTC	2.780e^-4	0.623	UPSTREAM CG3215 INTERGENIC
3L	23203230	3L_23203230_SNP [dm3] 3L_23210130_SNP [dm6]	T	A	2.799e^-4	0.623	INTRON nAChRalpha4
3L	22087490	3L_22087490_SNP [dm3] 3L_22094390_SNP [dm6]	T	C	2.800e^-4	0.623	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11005310	2R_11005310_SNP [dm3] 2R_15117805_SNP [dm6]	A	T	2.801e^-4	0.623	INTRON chn	TF binding site BDTNP1_TFBS_dl
2R	13640972	2R_13640972_INS [dm3] 2R_17753467_INS [dm6]	T	TATAT	2.805e^-4	0.623	DOWNSTREAM CG6385 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14508690	3L_14508690_SNP [dm3] 3L_14515590_SNP [dm6]	G	T	2.812e^-4	0.623	INTRON bbg
3R	13091426	3R_13091426_SNP [dm3] 3R_17265704_SNP [dm6]	C	A	2.819e^-4	0.623	UTR_3_PRIME CG44257 UPSTREAM beat-IIb
2R	7465058	2R_7465058_SNP [dm3] 2R_11577553_SNP [dm6]	T	G	2.822e^-4	0.623	UTR_3_PRIME tou
3R	26107908	3R_26107908_SNP [dm3] 3R_30282186_SNP [dm6]	C	A	2.830e^-4	0.623	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13124137	3R_13124137_SNP [dm3] 3R_17298415_SNP [dm6]	G	A	2.830e^-4	0.623	INTERGENIC
3R	22769976	3R_22769976_SNP [dm3] 3R_26944254_SNP [dm6]	C	T	2.833e^-4	0.623	INTRON sda
3L	12689420	3L_12689420_SNP [dm3] 3L_12696320_SNP [dm6]	G	A	2.834e^-4	0.623	INTRON mirr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7565545	2R_7565545_SNP [dm3] 2R_11678040_SNP [dm6]	T	C	2.835e^-4	0.623	DOWNSTREAM Tret1-2 INTRON Roc2
3R	25341511	3R_25341511_SNP [dm3] 3R_29515789_SNP [dm6]	A	T	2.843e^-4	0.623	UPSTREAM CG2014 INTRON CG2014	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3R	4158205	3R_4158205_SNP [dm3] 3R_8332483_SNP [dm6]	G	C	2.847e^-4	0.623	INTRON Poxm
2L	789106	2L_789106_SNP [dm3] 2L_789106_SNP [dm6]	A	T	2.853e^-4	0.623	DOWNSTREAM CG3544 INTRON Pkg21D	TF binding site mE1_TFBS_chinmo
2L	8393241	2L_8393241_SNP [dm3] 2L_8393241_SNP [dm6]	G	C	2.863e^-4	0.623	UPSTREAM CG42820 & 1 other DOWNSTREAM lectin-29Ca INTERGENIC
X	17718189	X_17718189_SNP [dm3] X_17824156_SNP [dm6]	G	A	2.869e^-4	0.623	SYNONYMOUS_CODING Socs16D	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	23058024	3L_23058024_INS [dm3] 3L_23064924_INS [dm6]	A	ATTATATCGAGCATTATCGA...	2.876e^-4	0.623	INTERGENIC	transposable element FlyBase
3L	24313798	3L_24313798_SNP [dm3] 3L_24320698_SNP [dm6]	G	A	2.877e^-4	0.623	INTERGENIC
3L	23444944	3L_23444944_SNP [dm3] 3L_23451844_SNP [dm6]	G	C	2.880e^-4	0.623	INTERGENIC
2R	9750977	2R_9750977_SNP [dm3] 2R_13863472_SNP [dm6]	G	A	2.882e^-4	0.623	UTR_3_PRIME CG13344 DOWNSTREAM shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11271845	3L_11271845_SNP [dm3] 3L_11278745_SNP [dm6]	G	A	2.883e^-4	0.623	INTERGENIC
2R	3330890	2R_3330890_SNP [dm3] 2R_7443385_SNP [dm6]	A	G	2.886e^-4	0.623	DOWNSTREAM kappaB-Ras & 2 others INTRON sPLA2
2R	10995364	2R_10995364_SNP [dm3] 2R_15107859_SNP [dm6]	G	C	2.887e^-4	0.623	INTERGENIC
X	11607007	X_11607007_SNP [dm3] X_11712974_SNP [dm6]	A	C	2.888e^-4	0.623	SYNONYMOUS_CODING Amun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	10639541	2L_10639541_SNP [dm3] 2L_10639541_SNP [dm6]	C	T	2.889e^-4	0.623	UPSTREAM CG31872 EXON CR45351
3R	24920324	3R_24920324_SNP [dm3] 3R_29094602_SNP [dm6]	A	G	2.890e^-4	0.623	UPSTREAM CR45030 INTRON CG11873
2L	1819990	2L_1819990_INS [dm3] 2L_1819990_INS [dm6]	A	ATTTTCCTGGCGAA...	2.891e^-4	0.623	INTERGENIC
3R	13087311	3R_13087311_SNP [dm3] 3R_17261589_SNP [dm6]	T	C	2.895e^-4	0.623	INTRON beat-IIb
X	16194078	X_16194078_SNP [dm3] X_16300045_SNP [dm6]	G	T	2.899e^-4	0.623	SYNONYMOUS_CODING CG3632
2R	7574083	2R_7574083_SNP [dm3] 2R_11686578_SNP [dm6]	A	T	2.899e^-4	0.623	UPSTREAM CG13196 INTRON Buffy	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	19621200	3R_19621200_SNP [dm3] 3R_23795478_SNP [dm6]	G	A	2.903e^-4	0.623	INTRON mbc
3L	17009542	3L_17009542_SNP [dm3] 3L_17016442_SNP [dm6]	A	T	2.908e^-4	0.623	UPSTREAM CG7728 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	24361034	3L_24361034_SNP [dm3] 3L_24367934_SNP [dm6]	G	A	2.908e^-4	0.623	INTRON nvd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2404606	3L_2404606_SNP [dm3] 3L_2404606_SNP [dm6]	G	A	2.915e^-4	0.623	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	7547588	3L_7547588_SNP [dm3] 3L_7554488_SNP [dm6]	C	T	2.915e^-4	0.623	INTERGENIC
3L	10373349	3L_10373349_SNP [dm3] 3L_10380249_SNP [dm6]	T	C	2.917e^-4	0.623	INTERGENIC
2L	4454821	2L_4454821_SNP [dm3] 2L_4454821_SNP [dm6]	A	C	2.917e^-4	0.623	SYNONYMOUS_CODING CG15434 UPSTREAM CG15440 DOWNSTREAM Gs1l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
2L	11945777	2L_11945777_SNP [dm3] 2L_11945777_SNP [dm6]	G	T	2.921e^-4	0.623	SYNONYMOUS_CODING Cry	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11791380	2R_11791380_SNP [dm3] 2R_15903875_SNP [dm6]	T	A	2.921e^-4	0.623	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	20194424	3R_20194424_SNP [dm3] 3R_24368702_SNP [dm6]	T	C	2.922e^-4	0.623	SYNONYMOUS_CODING CG33341 UPSTREAM CG42812 & 1 other
3R	20194436	3R_20194436_SNP [dm3] 3R_24368714_SNP [dm6]	T	C	2.922e^-4	0.623	SYNONYMOUS_CODING CG33341 UPSTREAM CG42812 & 1 other
3L	5463786	3L_5463786_SNP [dm3] 3L_5470686_SNP [dm6]	T	A	2.923e^-4	0.623	INTERGENIC
3R	17410266	3R_17410266_SNP [dm3] 3R_21584544_SNP [dm6]	A	G	2.928e^-4	0.623	INTRON InR
3R	17041961	3R_17041961_SNP [dm3] 3R_21216239_SNP [dm6]	C	T	2.931e^-4	0.623	UPSTREAM CR43975 DOWNSTREAM CG5862 INTERGENIC
2R	8590565	2R_8590565_SNP [dm3] 2R_12703060_SNP [dm6]	T	C	2.934e^-4	0.623	INTERGENIC
3L	7028066	3L_7028066_SNP [dm3] 3L_7034966_SNP [dm6]	T	C	2.936e^-4	0.623	SPLICE_SITE_REGION Mp INTRON Mp
2R	18946919	2R_18946919_SNP [dm3] 2R_23059396_SNP [dm6]	A	T	2.942e^-4	0.623	NON_SYNONYMOUS_CODING CG44252 DOWNSTREAM CG44253
3L	23876651	3L_23876651_SNP [dm3] 3L_23883551_SNP [dm6]	T	C	2.947e^-4	0.623	UPSTREAM CR43941 INTRON CG40470
2R	18955670	2R_18955670_SNP [dm3] 2R_23068147_SNP [dm6]	T	A	2.948e^-4	0.623	DOWNSTREAM PPO3 INTRON l_2_k09913	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9618615	2L_9618615_SNP [dm3] 2L_9618615_SNP [dm6]	T	C	2.952e^-4	0.623	INTRON GlcAT-S
3R	23227740	3R_23227740_SNP [dm3] 3R_27402018_SNP [dm6]	C	T	2.952e^-4	0.623	INTRON side
3L	24242631	3L_24242631_SNP [dm3] 3L_24249531_SNP [dm6]	T	A	2.958e^-4	0.623	INTRON Snap25
X	17210040	X_17210040_SNP [dm3] X_17316007_SNP [dm6]	T	C	2.959e^-4	0.623	INTRON B-H2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3L	8938059	3L_8938059_SNP [dm3] 3L_8944959_SNP [dm6]	T	A	2.960e^-4	0.623	UPSTREAM orb2 INTRON CG43783 & 1 other
X	17364555	X_17364555_INS [dm3] X_17470522_INS [dm6]	T	TT	2.962e^-4	0.623	INTRON CG43658
2L	15407768	2L_15407768_SNP [dm3] 2L_15407768_SNP [dm6]	G	T	2.963e^-4	0.623	INTERGENIC
3R	12951339	3R_12951339_SNP [dm3] 3R_17125617_SNP [dm6]	G	A	2.965e^-4	0.623	UPSTREAM cher DOWNSTREAM CG45079 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3L	2400019	3L_2400019_SNP [dm3] 3L_2400019_SNP [dm6]	T	C	2.967e^-4	0.623	UPSTREAM CG45186 INTRON CG45186
2R	16563554	2R_16563554_SNP [dm3] 2R_20676049_SNP [dm6]	A	T	2.967e^-4	0.623	INTERGENIC
2R	17104114	2R_17104114_SNP [dm3] 2R_21216609_SNP [dm6]	C	T	2.968e^-4	0.623	SYNONYMOUS_CODING CG15661	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7260321	3L_7260321_SNP [dm3] 3L_7267221_SNP [dm6]	T	C	2.973e^-4	0.623	UTR_3_PRIME unc-13-4A DOWNSTREAM unc-13-4A
3L	11775489	3L_11775489_SNP [dm3] 3L_11782389_SNP [dm6]	A	G	2.987e^-4	0.623	SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10267045	3L_10267045_SNP [dm3] 3L_10273945_SNP [dm6]	C	T	2.989e^-4	0.623	SYNONYMOUS_CODING Or67d
2R	8209313	2R_8209313_SNP [dm3] 2R_12321808_SNP [dm6]	C	T	2.993e^-4	0.623	SYNONYMOUS_CODING CG13163 UPSTREAM CR44316 DOWNSTREAM CG8841	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	5835254	3L_5835254_SNP [dm3] 3L_5842154_SNP [dm6]	G	A	2.996e^-4	0.623	INTRON vn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4478607	2L_4478607_SNP [dm3] 2L_4478607_SNP [dm6]	A	C	2.996e^-4	0.623	UTR_3_PRIME dp DOWNSTREAM dp
3R	18063976	3R_18063976_SNP [dm3] 3R_22238254_SNP [dm6]	C	A	2.999e^-4	0.623	INTRON SKIP
3L	15391306	3L_15391306_SNP [dm3] 3L_15398206_SNP [dm6]	A	G	3.001e^-4	0.623	INTERGENIC
3R	14836587	3R_14836587_SNP [dm3] 3R_19010865_SNP [dm6]	T	A	3.003e^-4	0.623	INTRON gukh
3R	14836588	3R_14836588_SNP [dm3] 3R_19010866_SNP [dm6]	A	T	3.003e^-4	0.623	INTRON gukh
2L	22039882	2L_22039882_SNP [dm3] 2L_22039882_SNP [dm6]	T	C	3.003e^-4	0.623	DOWNSTREAM CG41434 & 1 other INTERGENIC
3L	12313321	3L_12313321_SNP [dm3] 3L_12320221_SNP [dm6]	T	A	3.006e^-4	0.623	INTERGENIC
2L	21892668	2L_21892668_SNP [dm3] 2L_21892668_SNP [dm6]	G	T	3.015e^-4	0.623	INTERGENIC
X	22149782	X_22149782_DEL [dm3] X_22747946_DEL [dm6]	TTACCCCCGGCT...	T	3.017e^-4	0.623	INTRON CR44997
3L	13087661	3L_13087661_SNP [dm3] 3L_13094561_SNP [dm6]	A	G	3.018e^-4	0.623	INTERGENIC
3R	15551764	3R_15551764_SNP [dm3] 3R_19726042_SNP [dm6]	C	A	3.027e^-4	0.623	INTERGENIC
3L	11219586	3L_11219586_SNP [dm3] 3L_11226486_SNP [dm6]	C	T	3.028e^-4	0.623	SYNONYMOUS_CODING CG42671	TF binding site mE1_TFBS_cad
3L	24257146	3L_24257146_SNP [dm3] 3L_24264046_SNP [dm6]	C	A	3.034e^-4	0.623	INTRON Snap25
2L	12550673	2L_12550673_SNP [dm3] 2L_12550673_SNP [dm6]	C	T	3.040e^-4	0.623	INTERGENIC
3L	12703444	3L_12703444_SNP [dm3] 3L_12710344_SNP [dm6]	G	A	3.040e^-4	0.623	DOWNSTREAM mirr INTERGENIC
3L	11522431	3L_11522431_SNP [dm3] 3L_11529331_SNP [dm6]	T	A	3.045e^-4	0.623	INTRON Mob2
3L	11458246	3L_11458246_SNP [dm3] 3L_11465146_SNP [dm6]	T	G	3.046e^-4	0.623	INTRON CG6140	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
2L	10884651	2L_10884651_SNP [dm3] 2L_10884651_SNP [dm6]	A	G	3.048e^-4	0.623	INTERGENIC
3R	19566514	3R_19566514_SNP [dm3] 3R_23740792_SNP [dm6]	C	G	3.049e^-4	0.623	INTRON Hmgcr
3L	11227164	3L_11227164_SNP [dm3] 3L_11234064_SNP [dm6]	C	G	3.050e^-4	0.623	SYNONYMOUS_CODING Ir68a
2L	10299532	2L_10299532_SNP [dm3] 2L_10299532_SNP [dm6]	A	T	3.050e^-4	0.623	DOWNSTREAM CG13138 INTRON CYLD	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	16716558	3L_16716558_SNP [dm3] 3L_16723458_SNP [dm6]	C	T	3.059e^-4	0.624	SYNONYMOUS_CODING Dab UTR_3_PRIME Dab	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	9505660	X_9505660_SNP [dm3] X_9611627_SNP [dm6]	C	T	3.064e^-4	0.624	SYNONYMOUS_CODING CG42797	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	23500652	3L_23500652_SNP [dm3] 3L_23507552_SNP [dm6]	A	G	3.073e^-4	0.625	INTERGENIC	transposable element FlyBase
2L	3276214	2L_3276214_SNP [dm3] 2L_3276214_SNP [dm6]	C	T	3.088e^-4	0.625	NON_SYNONYMOUS_CODING CG3332	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6077103	2L_6077103_DEL [dm3] 2L_6077103_DEL [dm6]	TT	T	3.089e^-4	0.625	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	12764209	X_12764209_SNP [dm3] X_12870176_SNP [dm6]	C	T	3.093e^-4	0.625	INTRON Pde9
3R	16374084	3R_16374084_SNP [dm3] 3R_20548362_SNP [dm6]	T	C	3.096e^-4	0.625	INTRON Stat92E	TF binding site mE1_TFBS_cad
3R	9360113	3R_9360113_SNP [dm3] 3R_13534391_SNP [dm6]	A	G	3.096e^-4	0.625	INTERGENIC
2L	9618228	2L_9618228_SNP [dm3] 2L_9618228_SNP [dm6]	C	T	3.098e^-4	0.625	INTRON GlcAT-S
3L	15858756	3L_15858756_SNP [dm3] 3L_15865656_SNP [dm6]	G	A	3.103e^-4	0.625	INTRON pHCl
3L	2400021	3L_2400021_SNP [dm3] 3L_2400021_SNP [dm6]	G	T	3.104e^-4	0.625	UPSTREAM CG45186 INTRON CG45186
2R	10924451	2R_10924451_SNP [dm3] 2R_15036946_SNP [dm6]	A	T	3.104e^-4	0.625	SYNONYMOUS_CODING hbs	TF binding site mE1_TFBS_chinmo
3R	6508455	3R_6508455_SNP [dm3] 3R_10682733_SNP [dm6]	A	T	3.107e^-4	0.625	EXON CR44230	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14350883	3L_14350883_SNP [dm3] 3L_14357783_SNP [dm6]	C	A	3.110e^-4	0.625	INTRON fz
2L	12470467	2L_12470467_DEL [dm3] 2L_12470467_DEL [dm6]	AA	A	3.113e^-4	0.625	INTRON bun
2L	18467206	2L_18467206_SNP [dm3] 2L_18467206_SNP [dm6]	A	C	3.117e^-4	0.625	INTRON let-7-C
2R	8992302	2R_8992302_SNP [dm3] 2R_13104797_SNP [dm6]	G	A	3.118e^-4	0.625	SYNONYMOUS_CODING CG44341
3R	23937988	3R_23937988_SNP [dm3] 3R_28112266_SNP [dm6]	G	C	3.131e^-4	0.625	INTERGENIC
3R	16571018	3R_16571018_SNP [dm3] 3R_20745296_SNP [dm6]	G	T	3.131e^-4	0.625	NON_SYNONYMOUS_CODING CG31200 INTRON CG42322
2L	6300470	2L_6300470_SNP [dm3] 2L_6300470_SNP [dm6]	C	G	3.133e^-4	0.625	INTRON Ddr
3L	1179186	3L_1179186_SNP [dm3] 3L_1179186_SNP [dm6]	T	A	3.143e^-4	0.625	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7136842	2R_7136842_SNP [dm3] 2R_11249337_SNP [dm6]	G	T	3.153e^-4	0.625	UPSTREAM CG43112 DOWNSTREAM CG34227 INTERGENIC
2R	13657643	2R_13657643_SNP [dm3] 2R_17770138_SNP [dm6]	G	T	3.155e^-4	0.625	UPSTREAM CG18635 DOWNSTREAM CG6362 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	18214116	3L_18214116_SNP [dm3] 3L_18221016_SNP [dm6]	A	T	3.156e^-4	0.625	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_zfh1
2L	811818	2L_811818_SNP [dm3] 2L_811818_SNP [dm6]	G	C	3.160e^-4	0.625	NON_SYNONYMOUS_CODING Dbp21E2 DOWNSTREAM Nnf1b
3R	20587758	3R_20587758_SNP [dm3] 3R_24762036_SNP [dm6]	A	G	3.161e^-4	0.625	INTRON AstA	TF binding site mE1_TFBS_cad
3L	23948793	3L_23948793_SNP [dm3] 3L_23955693_SNP [dm6]	A	G	3.162e^-4	0.625	INTRON CG40470
2R	14438065	2R_14438065_SNP [dm3] 2R_18550560_SNP [dm6]	C	T	3.166e^-4	0.625	INTERGENIC
X	8911732	X_8911732_SNP [dm3] X_9017699_SNP [dm6]	C	A	3.168e^-4	0.625	INTRON CR43836 & 1 other
X	21318313	X_21318313_SNP [dm3] X_21447286_SNP [dm6]	T	A	3.171e^-4	0.625	INTRON CG42343	TF binding site mE1_TFBS_chinmo
X	7100304	X_7100304_SNP [dm3] X_7206271_SNP [dm6]	A	G	3.173e^-4	0.625	INTRON CR44357 & 1 other
2R	18938086	2R_18938086_SNP [dm3] 2R_23050563_SNP [dm6]	T	C	3.175e^-4	0.625	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3501169	3L_3501169_SNP [dm3] 3L_3501169_SNP [dm6]	C	T	3.178e^-4	0.625	INTRON CG42324
3L	24293605	3L_24293605_SNP [dm3] 3L_24300505_SNP [dm6]	A	G	3.185e^-4	0.625	INTERGENIC
2R	18212240	2R_18212240_SNP [dm3] 2R_22324735_SNP [dm6]	C	G	3.185e^-4	0.625	UPSTREAM Gp150 INTRON Gp150	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_sens
3R	4011488	3R_4011488_SNP [dm3] 3R_8185766_SNP [dm6]	C	G	3.187e^-4	0.625	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25978234	3R_25978234_SNP [dm3] 3R_30152512_SNP [dm6]	G	A	3.191e^-4	0.625	DOWNSTREAM CG11498 INTRON CG15529	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17434363	3L_17434363_SNP [dm3] 3L_17441263_SNP [dm6]	A	G	3.194e^-4	0.625	INTRON CG18265
2R	14427378	2R_14427378_SNP [dm3] 2R_18539873_SNP [dm6]	G	A	3.196e^-4	0.625	UTR_5_PRIME Rgk2 UPSTREAM Rgk2 DOWNSTREAM Pepck & 1 other	TF binding site mE1_TFBS_chinmo
X	8946266	X_8946266_DEL [dm3] X_9052233_DEL [dm6]	TT	T	3.204e^-4	0.625	INTRON CG42388	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17513372	X_17513372_SNP [dm3] X_17619339_SNP [dm6]	T	A	3.204e^-4	0.625	INTERGENIC
X	19299442	X_19299442_SNP [dm3] X_19405409_SNP [dm6]	A	G	3.208e^-4	0.625	INTRON kek5
X	19037992	X_19037992_SNP [dm3] X_19143959_SNP [dm6]	G	C	3.210e^-4	0.625	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_sna
3L	3027989	3L_3027989_SNP [dm3] 3L_3027989_SNP [dm6]	C	A	3.219e^-4	0.625	INTERGENIC
X	6152605	X_6152605_SNP [dm3] X_6258572_SNP [dm6]	T	A	3.221e^-4	0.625	DOWNSTREAM Spx INTRON schlank	TF binding site mE1_TFBS_sens
X	6152619	X_6152619_SNP [dm3] X_6258586_SNP [dm6]	A	C	3.221e^-4	0.625	DOWNSTREAM Spx INTRON schlank	TF binding site mE1_TFBS_sens
3L	7030888	3L_7030888_SNP [dm3] 3L_7037788_SNP [dm6]	C	T	3.229e^-4	0.625	INTRON Mp
2R	9353680	2R_9353680_SNP [dm3] 2R_13466175_SNP [dm6]	G	A	3.233e^-4	0.625	INTRON arr
2R	18961307	2R_18961307_SNP [dm3] 2R_23073784_SNP [dm6]	T	C	3.233e^-4	0.625	DOWNSTREAM snoRNA:229 INTRON Fib	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22033753	3L_22033753_SNP [dm3] 3L_22040653_SNP [dm6]	T	C	3.237e^-4	0.625	INTRON Oct-TyrR
2L	10053330	2L_10053330_MNP [dm3] 2L_10053330_MNP [dm6]	TGG	ATA	3.247e^-4	0.625	UPSTREAM CR44875 & 1 other INTERGENIC
2L	9602505	2L_9602505_SNP [dm3] 2L_9602505_SNP [dm6]	G	C	3.249e^-4	0.625	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8131557	2L_8131557_SNP [dm3] 2L_8131557_SNP [dm6]	C	T	3.253e^-4	0.625	SYNONYMOUS_CODING CG8668	TF binding site BDTNP1_TFBS_da
3R	13091587	3R_13091587_SNP [dm3] 3R_17265865_SNP [dm6]	G	C	3.255e^-4	0.625	UPSTREAM beat-IIb DOWNSTREAM CG44257 INTERGENIC
X	21291012	X_21291012_SNP [dm3] X_21419985_SNP [dm6]	C	A	3.256e^-4	0.625	INTERGENIC
2R	8992451	2R_8992451_SNP [dm3] 2R_13104946_SNP [dm6]	A	C	3.256e^-4	0.625	DOWNSTREAM CG44341 INTERGENIC
3L	22010275	3L_22010275_SNP [dm3] 3L_22017175_SNP [dm6]	T	C	3.256e^-4	0.625	INTERGENIC	transposable element FlyBase
3R	24825495	3R_24825495_SNP [dm3] 3R_28999773_SNP [dm6]	G	A	3.257e^-4	0.625	INTRON wat
3L	8920923	3L_8920923_DEL [dm3] 3L_8927823_DEL [dm6]	TATCT	T	3.264e^-4	0.626	INTRON Tsp66E
3L	18219124	3L_18219124_SNP [dm3] 3L_18226024_SNP [dm6]	T	A	3.266e^-4	0.626	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	788945	2L_788945_SNP [dm3] 2L_788945_SNP [dm6]	C	T	3.270e^-4	0.626	DOWNSTREAM CG3544 INTRON Pkg21D	TF binding site mE1_TFBS_chinmo
2L	14019951	2L_14019951_SNP [dm3] 2L_14019951_SNP [dm6]	T	C	3.284e^-4	0.627	SYNONYMOUS_CODING NimC3 DOWNSTREAM bgm EXON CR44849	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17466443	2R_17466443_SNP [dm3] 2R_21578938_SNP [dm6]	A	T	3.286e^-4	0.627	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	21277048	3L_21277048_SNP [dm3] 3L_21283948_SNP [dm6]	G	T	3.286e^-4	0.627	INTRON CG12974
2L	9610340	2L_9610340_SNP [dm3] 2L_9610340_SNP [dm6]	T	C	3.289e^-4	0.627	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad
3L	9741190	3L_9741190_SNP [dm3] 3L_9748090_SNP [dm6]	A	T	3.294e^-4	0.627	INTRON CG42268	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8185479	2R_8185479_SNP [dm3] 2R_12297974_SNP [dm6]	C	A	3.306e^-4	0.628	UTR_3_PRIME CG42700 UPSTREAM CR45271 DOWNSTREAM CG8850
3R	12759112	3R_12759112_SNP [dm3] 3R_16933390_SNP [dm6]	T	A	3.320e^-4	0.628	UTR_5_PRIME Abd-B INTRON Abd-B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	24146487	3L_24146487_SNP [dm3] 3L_24153387_SNP [dm6]	T	C	3.321e^-4	0.628	INTRON Snap25
3R	10664833	3R_10664833_SNP [dm3] 3R_14839111_SNP [dm6]	C	T	3.324e^-4	0.628	INTRON btsz
2L	9628232	2L_9628232_SNP [dm3] 2L_9628232_SNP [dm6]	A	C	3.327e^-4	0.628	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9728723	3L_9728723_SNP [dm3] 3L_9735623_SNP [dm6]	C	T	3.327e^-4	0.628	INTRON CG42268
3L	7203088	3L_7203088_SNP [dm3] 3L_7209988_SNP [dm6]	C	A	3.336e^-4	0.628	INTERGENIC
3R	15551820	3R_15551820_SNP [dm3] 3R_19726098_SNP [dm6]	T	G	3.338e^-4	0.628	INTERGENIC
3R	15551819	3R_15551819_SNP [dm3] 3R_19726097_SNP [dm6]	T	A	3.338e^-4	0.628	INTERGENIC
3L	23079336	3L_23079336_SNP [dm3] 3L_23086236_SNP [dm6]	C	T	3.344e^-4	0.628	INTERGENIC	transposable element FlyBase
3L	9918251	3L_9918251_SNP [dm3] 3L_9925151_SNP [dm6]	T	A	3.346e^-4	0.628	INTRON CG34356
3L	14509487	3L_14509487_SNP [dm3] 3L_14516387_SNP [dm6]	A	T	3.349e^-4	0.628	INTRON bbg
2L	9625420	2L_9625420_SNP [dm3] 2L_9625420_SNP [dm6]	A	G	3.355e^-4	0.628	UPSTREAM CG31882 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14381482	3L_14381482_DEL [dm3] 3L_14388382_DEL [dm6]	CAGC	C	3.356e^-4	0.628	INTERGENIC
2R	11071122	2R_11071122_DEL [dm3] 2R_15183617_DEL [dm6]	TGTGTA	T	3.360e^-4	0.628	INTRON igl

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.012e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.0201	0.0822

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2502 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	9132740	3L_9132740_SNP [dm3] 3L_9139640_SNP [dm6]	G	A	9.338e^-8	0.175	INTRON nwk
X	8744941	X_8744941_INS [dm3] X_8850908_INS [dm6]	G	GCTG	1.407e^-6	0.477	INTRON CG12075
3R	24254519	3R_24254519_INS [dm3] 3R_28428797_INS [dm6]	G	GGTATG	1.451e^-6	0.477	INTRON beat-VI
3L	11776362	3L_11776362_SNP [dm3] 3L_11783262_SNP [dm6]	G	A	1.559e^-6	0.477	SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	9132751	3L_9132751_INS [dm3] 3L_9139651_INS [dm6]	A	ACTGTCCAGTTTTA...	1.672e^-6	0.477	INTRON nwk
2L	9850005	2L_9850005_DEL [dm3] 2L_9850005_DEL [dm6]	GAGTACGTGTGCA...	T	2.783e^-6	0.477	INTRON nAChRalpha6
3L	23765906	3L_23765906_SNP [dm3] 3L_23772806_SNP [dm6]	C	A	2.900e^-6	0.477	INTERGENIC
3L	23438518	3L_23438518_SNP [dm3] 3L_23445418_SNP [dm6]	A	C	2.901e^-6	0.477	INTERGENIC
2L	4928671	2L_4928671_SNP [dm3] 2L_4928671_SNP [dm6]	C	T	3.060e^-6	0.477	UPSTREAM hoe1 INTRON hoe1
2R	10628938	2R_10628938_SNP [dm3] 2R_14741433_SNP [dm6]	C	A	3.118e^-6	0.477	INTRON CG12858	TF binding site mE1_TFBS_cad
2L	16433604	2L_16433604_SNP [dm3] 2L_16433604_SNP [dm6]	T	C	3.348e^-6	0.477	INTRON CG5888
3L	16751207	3L_16751207_SNP [dm3] 3L_16758107_SNP [dm6]	T	A	3.402e^-6	0.477	INTERGENIC
3L	9132739	3L_9132739_SNP [dm3] 3L_9139639_SNP [dm6]	T	C	3.433e^-6	0.477	INTRON nwk
2L	16433603	2L_16433603_SNP [dm3] 2L_16433603_SNP [dm6]	C	T	3.561e^-6	0.477	INTRON CG5888
3L	23446863	3L_23446863_SNP [dm3] 3L_23453763_SNP [dm6]	G	C	4.063e^-6	0.508	INTERGENIC	transposable element FlyBase
3L	9132734	3L_9132734_DEL [dm3] 3L_9139634_DEL [dm6]	GG	G	4.609e^-6	0.529	INTRON nwk
3L	11776384	3L_11776384_SNP [dm3] 3L_11783284_SNP [dm6]	G	A	4.944e^-6	0.529	SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	16273221	3L_16273221_DEL [dm3] 3L_16280121_DEL [dm6]	ACAAAAGCAACCAACCAACC...	A	5.243e^-6	0.529	UPSTREAM CG13050 & 1 other DOWNSTREAM CG13049 INTERGENIC
3R	8384777	3R_8384777_SNP [dm3] 3R_12559055_SNP [dm6]	G	A	5.944e^-6	0.529	INTRON Octbeta2R
3L	11776718	3L_11776718_SNP [dm3] 3L_11783618_SNP [dm6]	T	C	5.982e^-6	0.529	SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	9132732	3L_9132732_SNP [dm3] 3L_9139632_SNP [dm6]	A	T	6.161e^-6	0.529	INTRON nwk
3R	25313918	3R_25313918_SNP [dm3] 3R_29488196_SNP [dm6]	T	A	6.207e^-6	0.529	SYNONYMOUS_CODING CG2321	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11776390	3L_11776390_SNP [dm3] 3L_11783290_SNP [dm6]	C	A	7.835e^-6	0.578	SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	14327309	3L_14327309_SNP [dm3] 3L_14334209_SNP [dm6]	G	A	8.563e^-6	0.578	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7930430	3L_7930430_SNP [dm3] 3L_7937330_SNP [dm6]	T	C	8.780e^-6	0.578	DOWNSTREAM Srp9 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	4125981	X_4125981_DEL [dm3] X_4231948_DEL [dm6]	TAAACTT	T	8.798e^-6	0.578	INTERGENIC
3R	25543006	3R_25543006_SNP [dm3] 3R_29717284_SNP [dm6]	A	G	9.242e^-6	0.578	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	14826134	3R_14826134_SNP [dm3] 3R_19000412_SNP [dm6]	A	C	9.350e^-6	0.578	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25542987	3R_25542987_SNP [dm3] 3R_29717265_SNP [dm6]	G	T	9.671e^-6	0.578	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	10846523	3L_10846523_SNP [dm3] 3L_10853423_SNP [dm6]	T	G	9.952e^-6	0.578	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	23561494	3L_23561494_SNP [dm3] 3L_23568394_SNP [dm6]	G	A	1.056e^-5	0.578	INTRON AGO3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11606224	X_11606224_SNP [dm3] X_11712191_SNP [dm6]	G	A	1.070e^-5	0.578	SYNONYMOUS_CODING Amun	TF binding site mE1_TFBS_sens
3L	16754647	3L_16754647_SNP [dm3] 3L_16761547_SNP [dm6]	T	A	1.105e^-5	0.578	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	22047001	3L_22047001_SNP [dm3] 3L_22053901_SNP [dm6]	T	C	1.157e^-5	0.578	INTRON Oct-TyrR
3L	23326140	3L_23326140_DEL [dm3] 3L_23333040_DEL [dm6]	GAGTATGG	G	1.169e^-5	0.578	INTRON alpha-Cat	transposable element FlyBase
3L	13377222	3L_13377222_INS [dm3] 3L_13384122_INS [dm6]	A	AAT	1.172e^-5	0.578	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
3L	8717237	3L_8717237_SNP [dm3] 3L_8724137_SNP [dm6]	C	A	1.172e^-5	0.578	SPLICE_SITE_REGION CG6511 INTRON CG6511
3L	9132767	3L_9132767_SNP [dm3] 3L_9139667_SNP [dm6]	T	C	1.195e^-5	0.578	INTRON nwk
X	17210042	X_17210042_SNP [dm3] X_17316009_SNP [dm6]	A	T	1.293e^-5	0.578	INTRON B-H2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	4544732	2R_4544732_SNP [dm3] 2R_8657227_SNP [dm6]	T	C	1.295e^-5	0.578	INTRON ptc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18947334	2R_18947334_SNP [dm3] 2R_23059811_SNP [dm6]	G	A	1.306e^-5	0.578	SYNONYMOUS_CODING CG44252	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7823465	3L_7823465_SNP [dm3] 3L_7830365_SNP [dm6]	T	C	1.327e^-5	0.578	INTRON Pdp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25542990	3R_25542990_SNP [dm3] 3R_29717268_SNP [dm6]	A	T	1.348e^-5	0.578	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	3922024	3L_3922024_SNP [dm3] 3L_3922024_SNP [dm6]	A	T	1.357e^-5	0.578	INTRON Eip63F-1
2L	4928598	2L_4928598_SNP [dm3] 2L_4928598_SNP [dm6]	C	T	1.419e^-5	0.591	UPSTREAM hoe1 INTRON hoe1
3R	25542992	3R_25542992_SNP [dm3] 3R_29717270_SNP [dm6]	C	T	1.458e^-5	0.594	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	10862696	3L_10862696_INS [dm3] 3L_10869596_INS [dm6]	C	CT	1.535e^-5	0.596	UPSTREAM tna INTRON tna
3R	20565182	3R_20565182_SNP [dm3] 3R_24739460_SNP [dm6]	T	G	1.572e^-5	0.596	INTRON tok
3L	10846657	3L_10846657_SNP [dm3] 3L_10853557_SNP [dm6]	G	A	1.590e^-5	0.596	INTERGENIC	TF binding site mE1_TFBS_cad
3R	25543060	3R_25543060_SNP [dm3] 3R_29717338_SNP [dm6]	C	A	1.617e^-5	0.596	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	8009720	3L_8009720_SNP [dm3] 3L_8016620_SNP [dm6]	T	C	1.621e^-5	0.596	INTRON nmo
2R	7574102	2R_7574102_SNP [dm3] 2R_11686597_SNP [dm6]	A	T	1.656e^-5	0.597	UPSTREAM CG13196 INTRON Buffy	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	23323540	3L_23323540_SNP [dm3] 3L_23330440_SNP [dm6]	G	C	1.698e^-5	0.597	INTRON alpha-Cat
3L	23395554	3L_23395554_DEL [dm3] 3L_23402454_DEL [dm6]	TGGCGAGCAGCAT...	T	1.730e^-5	0.597	INTERGENIC
3L	23689575	3L_23689575_SNP [dm3] 3L_23696475_SNP [dm6]	G	A	1.768e^-5	0.597	INTERGENIC	transposable element FlyBase
3R	13091040	3R_13091040_SNP [dm3] 3R_17265318_SNP [dm6]	A	C	1.841e^-5	0.597	UTR_5_PRIME CG44257 UPSTREAM beat-IIb
3L	23447453	3L_23447453_SNP [dm3] 3L_23454353_SNP [dm6]	C	G	1.893e^-5	0.597	INTERGENIC
3L	14497176	3L_14497176_SNP [dm3] 3L_14504076_SNP [dm6]	G	C	1.934e^-5	0.597	INTRON bbg
X	4292901	X_4292901_SNP [dm3] X_4398868_SNP [dm6]	A	T	1.980e^-5	0.597	INTRON CR32773
3L	13377103	3L_13377103_DEL [dm3] 3L_13384003_DEL [dm6]	AA	A	1.981e^-5	0.597	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
3R	5224594	3R_5224594_SNP [dm3] 3R_9398872_SNP [dm6]	C	A	2.027e^-5	0.597	NON_SYNONYMOUS_CODING Or85f DOWNSTREAM CG34117	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_sens
3L	23315613	3L_23315613_SNP [dm3] 3L_23322513_SNP [dm6]	G	A	2.043e^-5	0.597	INTRON alpha-Cat	transposable element FlyBase
3L	9132763	3L_9132763_SNP [dm3] 3L_9139663_SNP [dm6]	G	C	2.111e^-5	0.597	INTRON nwk
X	17210040	X_17210040_SNP [dm3] X_17316007_SNP [dm6]	T	C	2.185e^-5	0.597	INTRON B-H2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	17130466	2R_17130466_SNP [dm3] 2R_21242961_SNP [dm6]	A	T	2.265e^-5	0.597	INTRON ASPP
2R	9849817	2R_9849817_SNP [dm3] 2R_13962312_SNP [dm6]	C	T	2.302e^-5	0.597	SYNONYMOUS_CODING Cp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15818178	2L_15818178_SNP [dm3] 2L_15818178_SNP [dm6]	T	G	2.379e^-5	0.597	INTERGENIC
3R	13124108	3R_13124108_SNP [dm3] 3R_17298386_SNP [dm6]	T	C	2.394e^-5	0.597	INTERGENIC
2R	17311370	2R_17311370_SNP [dm3] 2R_21423865_SNP [dm6]	C	T	2.402e^-5	0.597	INTRON Sdc
3L	23323732	3L_23323732_SNP [dm3] 3L_23330632_SNP [dm6]	C	A	2.405e^-5	0.597	INTRON alpha-Cat
3R	16611536	3R_16611536_SNP [dm3] 3R_20785814_SNP [dm6]	T	C	2.411e^-5	0.597	INTRON Syp
3L	3922016	3L_3922016_SNP [dm3] 3L_3922016_SNP [dm6]	C	T	2.420e^-5	0.597	INTRON Eip63F-1
2L	3276132	2L_3276132_SNP [dm3] 2L_3276132_SNP [dm6]	T	G	2.480e^-5	0.597	SYNONYMOUS_CODING CG3332	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	23272530	3L_23272530_SNP [dm3] 3L_23279430_SNP [dm6]	T	G	2.501e^-5	0.597	INTRON nAChRalpha4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd transposable element FlyBase
3L	10706868	3L_10706868_SNP [dm3] 3L_10713768_SNP [dm6]	A	T	2.549e^-5	0.597	INTERGENIC
2L	4928578	2L_4928578_SNP [dm3] 2L_4928578_SNP [dm6]	C	T	2.577e^-5	0.597	UPSTREAM hoe1 INTRON hoe1
3R	19999294	3R_19999294_SNP [dm3] 3R_24173572_SNP [dm6]	G	A	2.597e^-5	0.597	INTRON CG13606
2R	12328310	2R_12328310_DEL [dm3] 2R_16440805_DEL [dm6]	AG	A	2.647e^-5	0.597	INTERGENIC
2L	8187244	2L_8187244_SNP [dm3] 2L_8187244_SNP [dm6]	T	G	2.649e^-5	0.597	SYNONYMOUS_CODING Piezo
2L	12550731	2L_12550731_DEL [dm3] 2L_12550731_DEL [dm6]	AA	A	2.666e^-5	0.597	INTERGENIC
3R	4010876	3R_4010876_SNP [dm3] 3R_8185154_SNP [dm6]	C	G	2.687e^-5	0.597	INTERGENIC
2L	6238737	2L_6238737_SNP [dm3] 2L_6238737_SNP [dm6]	G	T	2.749e^-5	0.597	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	1903057	3R_1903057_SNP [dm3] 3R_6077335_SNP [dm6]	G	A	2.768e^-5	0.597	INTRON Or83c
3L	9132742	3L_9132742_SNP [dm3] 3L_9139642_SNP [dm6]	T	C	2.853e^-5	0.597	INTRON nwk
2R	7565545	2R_7565545_SNP [dm3] 2R_11678040_SNP [dm6]	T	C	2.873e^-5	0.597	DOWNSTREAM Tret1-2 INTRON Roc2
3R	25543001	3R_25543001_SNP [dm3] 3R_29717279_SNP [dm6]	G	C	2.896e^-5	0.597	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	3926680	3L_3926680_SNP [dm3] 3L_3926680_SNP [dm6]	C	T	2.919e^-5	0.597	INTRON Eip63F-1
X	8911823	X_8911823_SNP [dm3] X_9017790_SNP [dm6]	T	A	2.983e^-5	0.597	INTRON CR43836 & 1 other
3R	25979387	3R_25979387_SNP [dm3] 3R_30153665_SNP [dm6]	A	T	3.009e^-5	0.597	DOWNSTREAM CG15529 INTRON CG11498	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	8129642	3R_8129642_SNP [dm3] 3R_12303920_SNP [dm6]	C	T	3.010e^-5	0.597	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12379676	3L_12379676_SNP [dm3] 3L_12386576_SNP [dm6]	G	T	3.087e^-5	0.597	INTRON Ncc69	TF binding site mE1_TFBS_cnc
3R	14909472	3R_14909472_SNP [dm3] 3R_19083750_SNP [dm6]	G	A	3.089e^-5	0.597	INTRON cdi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13377087	3L_13377087_INS [dm3] 3L_13383987_INS [dm6]	T	TATATT	3.100e^-5	0.597	UTR_3_PRIME ImpL1 UPSTREAM CG14110	TF binding site mE1_TFBS_cad
3L	23322902	3L_23322902_SNP [dm3] 3L_23329802_SNP [dm6]	T	A	3.126e^-5	0.597	UTR_3_PRIME alpha-Cat INTRON alpha-Cat	transposable element FlyBase
2L	10639556	2L_10639556_DEL [dm3] 2L_10639556_DEL [dm6]	AA	A	3.133e^-5	0.597	UPSTREAM CG31872 EXON CR45351
3R	6369628	3R_6369628_SNP [dm3] 3R_10543906_SNP [dm6]	G	A	3.142e^-5	0.597	INTRON hth
X	17230634	X_17230634_SNP [dm3] X_17336601_SNP [dm6]	C	T	3.184e^-5	0.597	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16436632	X_16436632_SNP [dm3] X_16542599_SNP [dm6]	C	A	3.242e^-5	0.597	UTR_3_PRIME CG9902 DOWNSTREAM CG9902
2R	7574083	2R_7574083_SNP [dm3] 2R_11686578_SNP [dm6]	A	T	3.347e^-5	0.597	UPSTREAM CG13196 INTRON Buffy	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	23583808	3L_23583808_SNP [dm3] 3L_23590708_SNP [dm6]	C	T	3.398e^-5	0.597	INTRON AGO3
2R	7604548	2R_7604548_SNP [dm3] 2R_11717043_SNP [dm6]	C	A	3.450e^-5	0.597	INTRON pyr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12357815	3R_12357815_SNP [dm3] 3R_16532093_SNP [dm6]	T	G	3.474e^-5	0.597	INTRON CG42342
2R	7564258	2R_7564258_SNP [dm3] 2R_11676753_SNP [dm6]	C	T	3.487e^-5	0.597	SYNONYMOUS_CODING Tret1-2 INTRON Roc2	TF binding site mE1_TFBS_cad
2R	18947448	2R_18947448_SNP [dm3] 2R_23059925_SNP [dm6]	C	T	3.544e^-5	0.597	SYNONYMOUS_CODING CG44252	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19999292	3R_19999292_SNP [dm3] 3R_24173570_SNP [dm6]	A	T	3.553e^-5	0.597	INTRON CG13606
2L	18649109	2L_18649109_SNP [dm3] 2L_18649109_SNP [dm6]	A	G	3.555e^-5	0.597	INTRON MESR3
3R	11556293	3R_11556293_SNP [dm3] 3R_15730571_SNP [dm6]	T	C	3.580e^-5	0.597	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11188377	3L_11188377_INS [dm3] 3L_11195277_INS [dm6]	T	TT	3.613e^-5	0.597	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
3L	23689730	3L_23689730_SNP [dm3] 3L_23696630_SNP [dm6]	C	A	3.639e^-5	0.597	INTERGENIC	transposable element FlyBase
2L	18071280	2L_18071280_SNP [dm3] 2L_18071280_SNP [dm6]	A	G	3.652e^-5	0.597	INTERGENIC	TF binding site mE1_TFBS_inv
3R	14826203	3R_14826203_SNP [dm3] 3R_19000481_SNP [dm6]	T	C	3.675e^-5	0.597	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18957314	2R_18957314_SNP [dm3] 2R_23069791_SNP [dm6]	A	T	3.703e^-5	0.597	UPSTREAM l_2_k09913 INTRON l_2_k09913	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	9840450	3R_9840450_SNP [dm3] 3R_14014728_SNP [dm6]	A	C	3.734e^-5	0.597	INTRON rdx	TF binding site BDTNP1_TFBS_dl
X	11607007	X_11607007_SNP [dm3] X_11712974_SNP [dm6]	A	C	3.761e^-5	0.597	SYNONYMOUS_CODING Amun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	15864645	X_15864645_SNP [dm3] X_15970612_SNP [dm6]	C	T	3.767e^-5	0.597	INTRON mmd
3R	25979414	3R_25979414_SNP [dm3] 3R_30153692_SNP [dm6]	A	C	3.781e^-5	0.597	DOWNSTREAM CG15529 INTRON CG11498	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	9340119	3R_9340119_SNP [dm3] 3R_13514397_SNP [dm6]	G	A	3.810e^-5	0.597	INTERGENIC
3R	12940656	3R_12940656_SNP [dm3] 3R_17114934_SNP [dm6]	C	T	3.859e^-5	0.597	INTRON cher
2R	18955693	2R_18955693_SNP [dm3] 2R_23068170_SNP [dm6]	A	T	3.870e^-5	0.597	DOWNSTREAM PPO3 INTRON l_2_k09913	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5180694	X_5180694_SNP [dm3] X_5286661_SNP [dm6]	A	G	3.883e^-5	0.597	INTERGENIC
3L	23780916	3L_23780916_SNP [dm3] 3L_23787816_SNP [dm6]	A	G	3.895e^-5	0.597	DOWNSTREAM CG43968 INTERGENIC	transposable element FlyBase
3L	9497778	3L_9497778_SNP [dm3] 3L_9504678_SNP [dm6]	C	A	3.950e^-5	0.597	INTRON path	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	7125071	2R_7125071_SNP [dm3] 2R_11237566_SNP [dm6]	G	T	3.958e^-5	0.597	SYNONYMOUS_CODING CG34224 UPSTREAM CG13217 DOWNSTREAM CG13216	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15508057	3L_15508057_SNP [dm3] 3L_15514957_SNP [dm6]	T	C	4.003e^-5	0.597	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17614527	2R_17614527_SNP [dm3] 2R_21727022_SNP [dm6]	C	T	4.029e^-5	0.597	DOWNSTREAM CR44750 INTERGENIC	transposable element FlyBase
2R	16145479	2R_16145479_SNP [dm3] 2R_20257974_SNP [dm6]	A	T	4.033e^-5	0.597	UPSTREAM Hsl & 1 other INTRON Hsl	TF binding site mE1_TFBS_cad
3L	14509424	3L_14509424_SNP [dm3] 3L_14516324_SNP [dm6]	T	C	4.055e^-5	0.597	INTRON bbg
3L	16751236	3L_16751236_SNP [dm3] 3L_16758136_SNP [dm6]	A	G	4.072e^-5	0.597	INTERGENIC
3R	21465818	3R_21465818_SNP [dm3] 3R_25640096_SNP [dm6]	T	A	4.189e^-5	0.6	INTRON jigr1
2L	4928673	2L_4928673_SNP [dm3] 2L_4928673_SNP [dm6]	C	T	4.205e^-5	0.6	UPSTREAM hoe1 INTRON hoe1
2R	10941247	2R_10941247_SNP [dm3] 2R_15053742_SNP [dm6]	C	T	4.258e^-5	0.6	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18938482	2R_18938482_INS [dm3] 2R_23050959_INS [dm6]	A	AA	4.289e^-5	0.6	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22769515	3R_22769515_SNP [dm3] 3R_26943793_SNP [dm6]	A	G	4.293e^-5	0.6	INTRON sda
3R	9271115	3R_9271115_SNP [dm3] 3R_13445393_SNP [dm6]	A	G	4.309e^-5	0.6	INTERGENIC
3L	23388036	3L_23388036_SNP [dm3] 3L_23394936_SNP [dm6]	A	T	4.390e^-5	0.6	INTERGENIC
3L	9741190	3L_9741190_SNP [dm3] 3L_9748090_SNP [dm6]	A	T	4.405e^-5	0.6	INTRON CG42268	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11285050	3R_11285050_SNP [dm3] 3R_15459328_SNP [dm6]	C	G	4.508e^-5	0.6	INTRON AdamTS-A
3L	24273577	3L_24273577_INS [dm3] 3L_24280477_INS [dm6]	T	TT	4.514e^-5	0.6	INTRON Snap25
2L	4453888	2L_4453888_SNP [dm3] 2L_4453888_SNP [dm6]	C	A	4.524e^-5	0.6	SYNONYMOUS_CODING CG15440 UPSTREAM CG15439 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6281762	2L_6281762_SNP [dm3] 2L_6281762_SNP [dm6]	C	T	4.533e^-5	0.6	INTRON Ddr
3L	23497091	3L_23497091_SNP [dm3] 3L_23503991_SNP [dm6]	T	G	4.554e^-5	0.6	INTERGENIC
3R	26955857	3R_26955857_SNP [dm3] 3R_31130135_SNP [dm6]	G	T	4.570e^-5	0.6	NON_SYNONYMOUS_CODING CG15556	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4107852	3L_4107852_SNP [dm3] 3L_4107852_SNP [dm6]	G	T	4.600e^-5	0.6	UPSTREAM Ack & 1 other DOWNSTREAM Fit1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	9741181	3L_9741181_SNP [dm3] 3L_9748081_SNP [dm6]	T	A	4.609e^-5	0.6	INTRON CG42268	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	24500144	3L_24500144_SNP [dm3] 3L_24507044_SNP [dm6]	A	C	4.836e^-5	0.623	INTERGENIC
3R	9188127	3R_9188127_SNP [dm3] 3R_13362405_SNP [dm6]	C	T	4.873e^-5	0.623	SYNONYMOUS_CODING poly	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13091007	3R_13091007_SNP [dm3] 3R_17265285_SNP [dm6]	G	T	4.879e^-5	0.623	START_GAINED CG44257 UTR_5_PRIME CG44257 UPSTREAM beat-IIb
3L	12307203	3L_12307203_SNP [dm3] 3L_12314103_SNP [dm6]	C	G	4.945e^-5	0.623	INTERGENIC	regulatory region REDfly_CRMs
3R	26418642	3R_26418642_SNP [dm3] 3R_30592920_SNP [dm6]	G	C	4.997e^-5	0.623	DOWNSTREAM CG2246 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10703202	2L_10703202_SNP [dm3] 2L_10703202_SNP [dm6]	C	T	5.014e^-5	0.623	UPSTREAM CG6415 INTRON Lip2	TF binding site BDTNP1_TFBS_dl
3L	9133491	3L_9133491_SNP [dm3] 3L_9140391_SNP [dm6]	A	T	5.047e^-5	0.623	NON_SYNONYMOUS_CODING nwk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15321979	X_15321979_SNP [dm3] X_15427946_SNP [dm6]	T	C	5.070e^-5	0.623	INTRON Cngl
2L	14039815	2L_14039815_SNP [dm3] 2L_14039815_SNP [dm6]	C	T	5.082e^-5	0.623	UPSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	24915856	3R_24915856_SNP [dm3] 3R_29090134_SNP [dm6]	T	A	5.148e^-5	0.626	INTRON CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	12689471	3L_12689471_SNP [dm3] 3L_12696371_SNP [dm6]	T	A	5.173e^-5	0.626	INTRON mirr	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	12470467	2L_12470467_DEL [dm3] 2L_12470467_DEL [dm6]	AA	A	5.322e^-5	0.629	INTRON bun
3L	3922015	3L_3922015_SNP [dm3] 3L_3922015_SNP [dm6]	T	G	5.350e^-5	0.629	INTRON Eip63F-1
3L	17780749	3L_17780749_SNP [dm3] 3L_17787649_SNP [dm6]	C	T	5.351e^-5	0.629	INTERGENIC
2L	9601903	2L_9601903_SNP [dm3] 2L_9601903_SNP [dm6]	G	T	5.368e^-5	0.629	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9881604	3R_9881604_SNP [dm3] 3R_14055882_SNP [dm6]	A	T	5.368e^-5	0.629	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11219580	3L_11219580_SNP [dm3] 3L_11226480_SNP [dm6]	T	C	5.401e^-5	0.629	SYNONYMOUS_CODING CG42671	TF binding site mE1_TFBS_cad
3L	22044615	3L_22044615_SNP [dm3] 3L_22051515_SNP [dm6]	C	T	5.486e^-5	0.632	INTRON Oct-TyrR
X	22149802	X_22149802_SNP [dm3] X_22747966_SNP [dm6]	C	T	5.535e^-5	0.632	INTRON CR44997
3L	23455475	3L_23455475_DEL [dm3] 3L_23462375_DEL [dm6]	TT	T	5.561e^-5	0.632	INTERGENIC	transposable element FlyBase
3R	25978234	3R_25978234_SNP [dm3] 3R_30152512_SNP [dm6]	G	A	5.593e^-5	0.632	DOWNSTREAM CG11498 INTRON CG15529	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13376237	3L_13376237_SNP [dm3] 3L_13383137_SNP [dm6]	G	A	5.697e^-5	0.632	SYNONYMOUS_CODING ImpL1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16748316	3L_16748316_SNP [dm3] 3L_16755216_SNP [dm6]	C	A	5.720e^-5	0.632	UPSTREAM CG42852 INTERGENIC
3R	11861591	3R_11861591_SNP [dm3] 3R_16035869_SNP [dm6]	C	A	5.737e^-5	0.632	INTRON pnr
2R	18938191	2R_18938191_SNP [dm3] 2R_23050668_SNP [dm6]	A	T	5.779e^-5	0.632	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	20955927	3L_20955927_SNP [dm3] 3L_20962827_SNP [dm6]	G	C	5.782e^-5	0.632	UTR_3_PRIME CG12983 UPSTREAM CG10587	TF binding site BDTNP1_TFBS_prd mE1_TFBS_sens
3L	1651530	3L_1651530_SNP [dm3] 3L_1651530_SNP [dm6]	C	A	5.798e^-5	0.632	UTR_3_PRIME CG7967 DOWNSTREAM CG13920	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu
X	16158541	X_16158541_SNP [dm3] X_16264508_SNP [dm6]	C	A	5.858e^-5	0.632	DOWNSTREAM CG12507 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	7604587	2R_7604587_SNP [dm3] 2R_11717082_SNP [dm6]	A	G	5.861e^-5	0.632	INTRON pyr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9514207	X_9514207_SNP [dm3] X_9620174_SNP [dm6]	C	T	5.881e^-5	0.632	INTRON CG42797	TF binding site mE1_TFBS_chinmo
2R	7604577	2R_7604577_INS [dm3] 2R_11717072_INS [dm6]	T	ATAAATATTTG...	5.896e^-5	0.632	INTRON pyr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14996116	3R_14996116_SNP [dm3] 3R_19170394_SNP [dm6]	T	G	5.998e^-5	0.639	UTR_3_PRIME sqz
2L	4928538	2L_4928538_SNP [dm3] 2L_4928538_SNP [dm6]	A	G	6.054e^-5	0.642	UPSTREAM hoe1 INTRON hoe1
X	16883453	X_16883453_SNP [dm3] X_16989420_SNP [dm6]	T	A	6.095e^-5	0.642	INTRON CG45002
3L	23387786	3L_23387786_SNP [dm3] 3L_23394686_SNP [dm6]	A	T	6.171e^-5	0.642	INTERGENIC
3L	8897175	3L_8897175_SNP [dm3] 3L_8904075_SNP [dm6]	A	T	6.191e^-5	0.642	DOWNSTREAM tRNA:T:Psi INTRON TrpA1
2L	10179297	2L_10179297_SNP [dm3] 2L_10179297_SNP [dm6]	C	T	6.335e^-5	0.642	INTRON CG44153
X	17229329	X_17229329_SNP [dm3] X_17335296_SNP [dm6]	T	A	6.373e^-5	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12378611	3L_12378611_SNP [dm3] 3L_12385511_SNP [dm6]	G	T	6.425e^-5	0.642	INTRON Ncc69
3L	10860276	3L_10860276_DEL [dm3] 3L_10867176_DEL [dm6]	TGCTCACCCGCCATCCA...	T	6.441e^-5	0.642	INTRON tna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11294941	3R_11294941_SNP [dm3] 3R_15469219_SNP [dm6]	C	A	6.470e^-5	0.642	INTRON AdamTS-A
3R	21465760	3R_21465760_SNP [dm3] 3R_25640038_SNP [dm6]	A	T	6.477e^-5	0.642	INTRON jigr1
3L	7987364	3L_7987364_SNP [dm3] 3L_7994264_SNP [dm6]	A	G	6.492e^-5	0.642	INTRON nmo	TF binding site mE1_TFBS_cad
2R	18947364	2R_18947364_SNP [dm3] 2R_23059841_SNP [dm6]	G	A	6.553e^-5	0.642	SYNONYMOUS_CODING CG44252	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14661197	2L_14661197_SNP [dm3] 2L_14661197_SNP [dm6]	T	C	6.555e^-5	0.642	INTRON osp
2L	5883093	2L_5883093_SNP [dm3] 2L_5883093_SNP [dm6]	A	G	6.556e^-5	0.642	UPSTREAM CG44574 INTERGENIC
2R	18946854	2R_18946854_SNP [dm3] 2R_23059331_SNP [dm6]	T	C	6.613e^-5	0.642	DOWNSTREAM CG44253 INTRON CG44252
2L	3276214	2L_3276214_SNP [dm3] 2L_3276214_SNP [dm6]	C	T	6.648e^-5	0.642	NON_SYNONYMOUS_CODING CG3332	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15547241	2R_15547241_SNP [dm3] 2R_19659736_SNP [dm6]	A	G	6.698e^-5	0.642	DOWNSTREAM CG15125 & 1 other EXON CR44504	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13307201	X_13307201_SNP [dm3] X_13413168_SNP [dm6]	C	T	6.715e^-5	0.642	UPSTREAM Set2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	18467137	2L_18467137_SNP [dm3] 2L_18467137_SNP [dm6]	C	G	6.731e^-5	0.642	INTRON let-7-C
3L	23761760	3L_23761760_DEL [dm3] 3L_23768660_DEL [dm6]	TT	T	6.828e^-5	0.642	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14255720	2L_14255720_SNP [dm3] 2L_14255720_SNP [dm6]	T	C	6.850e^-5	0.642	INTERGENIC
2R	10549252	2R_10549252_SNP [dm3] 2R_14661747_SNP [dm6]	G	C	6.914e^-5	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	23199167	3L_23199167_SNP [dm3] 3L_23206067_SNP [dm6]	T	C	6.928e^-5	0.642	UPSTREAM nAChRalpha4 INTERGENIC	transposable element FlyBase
3R	26418491	3R_26418491_SNP [dm3] 3R_30592769_SNP [dm6]	A	G	6.945e^-5	0.642	DOWNSTREAM CG2246 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3276135	2L_3276135_SNP [dm3] 2L_3276135_SNP [dm6]	G	A	7.025e^-5	0.642	SYNONYMOUS_CODING CG3332	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13036620	3R_13036620_SNP [dm3] 3R_17210898_SNP [dm6]	G	A	7.051e^-5	0.642	INTERGENIC
3L	23329671	3L_23329671_SNP [dm3] 3L_23336571_SNP [dm6]	G	A	7.068e^-5	0.642	INTRON alpha-Cat	transposable element FlyBase
3L	23306706	3L_23306706_SNP [dm3] 3L_23313606_SNP [dm6]	C	A	7.093e^-5	0.642	INTERGENIC	transposable element FlyBase
2R	10622249	2R_10622249_SNP [dm3] 2R_14734744_SNP [dm6]	C	A	7.111e^-5	0.642	INTERGENIC
3L	23507917	3L_23507917_SNP [dm3] 3L_23514817_SNP [dm6]	T	G	7.119e^-5	0.642	INTERGENIC	transposable element FlyBase
3L	23657333	3L_23657333_DEL [dm3] 3L_23664233_DEL [dm6]	TGGGCTTT	T	7.123e^-5	0.642	INTRON AGO3	transposable element FlyBase
3L	13376183	3L_13376183_SNP [dm3] 3L_13383083_SNP [dm6]	C	T	7.138e^-5	0.642	SYNONYMOUS_CODING ImpL1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	23394468	3L_23394468_SNP [dm3] 3L_23401368_SNP [dm6]	C	T	7.148e^-5	0.642	INTERGENIC
2L	8662837	2L_8662837_SNP [dm3] 2L_8662837_SNP [dm6]	T	G	7.213e^-5	0.644	INTRON Sema-1a
3R	14931218	3R_14931218_SNP [dm3] 3R_19105496_SNP [dm6]	C	G	7.378e^-5	0.649	INTRON CG6040
3L	9557521	3L_9557521_SNP [dm3] 3L_9564421_SNP [dm6]	G	T	7.389e^-5	0.649	INTRON CG42673	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	13087311	3R_13087311_SNP [dm3] 3R_17261589_SNP [dm6]	T	C	7.589e^-5	0.649	INTRON beat-IIb
3L	23603692	3L_23603692_DEL [dm3] 3L_23610592_DEL [dm6]	TA	G	7.627e^-5	0.649	INTRON AGO3	transposable element FlyBase
3L	23390194	3L_23390194_SNP [dm3] 3L_23397094_SNP [dm6]	A	G	7.655e^-5	0.649	INTERGENIC	transposable element FlyBase
3R	10669611	3R_10669611_SNP [dm3] 3R_14843889_SNP [dm6]	C	G	7.669e^-5	0.649	INTRON btsz
3L	23335266	3L_23335266_SNP [dm3] 3L_23342166_SNP [dm6]	C	A	7.702e^-5	0.649	DOWNSTREAM CG32230 INTRON CG32230
2R	15269554	2R_15269554_SNP [dm3] 2R_19382049_SNP [dm6]	T	C	7.708e^-5	0.649	SYNONYMOUS_CODING CG10073
2L	563889	2L_563889_SNP [dm3] 2L_563889_SNP [dm6]	A	T	7.721e^-5	0.649	UPSTREAM CG2794 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
2L	11945777	2L_11945777_SNP [dm3] 2L_11945777_SNP [dm6]	G	T	7.848e^-5	0.649	SYNONYMOUS_CODING Cry	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15207676	2L_15207676_SNP [dm3] 2L_15207676_SNP [dm6]	A	G	7.855e^-5	0.649	UPSTREAM CR44196 INTERGENIC
3L	7548699	3L_7548699_SNP [dm3] 3L_7555599_SNP [dm6]	C	A	7.856e^-5	0.649	DOWNSTREAM CG14837 INTERGENIC
2L	9615373	2L_9615373_SNP [dm3] 2L_9615373_SNP [dm6]	C	T	7.874e^-5	0.649	SYNONYMOUS_CODING Trx-2
2R	7565510	2R_7565510_SNP [dm3] 2R_11678005_SNP [dm6]	G	C	7.918e^-5	0.649	UTR_3_PRIME Tret1-2 INTRON Roc2
2L	1785886	2L_1785886_SNP [dm3] 2L_1785886_SNP [dm6]	C	T	7.927e^-5	0.649	DOWNSTREAM Gr22e INTERGENIC
3L	12338456	3L_12338456_SNP [dm3] 3L_12345356_SNP [dm6]	T	C	7.936e^-5	0.649	INTRON CrzR
2L	10639633	2L_10639633_SNP [dm3] 2L_10639633_SNP [dm6]	T	A	7.980e^-5	0.649	UPSTREAM CG31872 DOWNSTREAM CR45351 INTERGENIC
3L	15938963	3L_15938963_SNP [dm3] 3L_15945863_SNP [dm6]	G	C	7.995e^-5	0.649	INTRON Pka-C3
3R	23025573	3R_23025573_DEL [dm3] 3R_27199851_DEL [dm6]	GG	G	8.025e^-5	0.649	INTERGENIC	regulatory region REDfly_CRMs
3L	23583809	3L_23583809_SNP [dm3] 3L_23590709_SNP [dm6]	C	A	8.053e^-5	0.649	INTRON AGO3
3L	12337546	3L_12337546_SNP [dm3] 3L_12344446_SNP [dm6]	G	A	8.112e^-5	0.649	INTRON CrzR
3R	25542985	3R_25542985_SNP [dm3] 3R_29717263_SNP [dm6]	A	C	8.160e^-5	0.649	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	1598483	2L_1598483_SNP [dm3] 2L_1598483_SNP [dm6]	T	G	8.161e^-5	0.649	INTRON haf & 1 other
3R	25898635	3R_25898635_SNP [dm3] 3R_30072913_SNP [dm6]	A	G	8.189e^-5	0.649	INTRON sima	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9903103	3R_9903103_SNP [dm3] 3R_14077381_SNP [dm6]	T	C	8.203e^-5	0.649	INTRON foxo
2R	14821695	2R_14821695_SNP [dm3] 2R_18934190_SNP [dm6]	T	A	8.232e^-5	0.649	INTRON sano
2R	19004045	2R_19004045_SNP [dm3] 2R_23116522_SNP [dm6]	T	C	8.263e^-5	0.649	INTERGENIC
3R	11285271	3R_11285271_SNP [dm3] 3R_15459549_SNP [dm6]	C	T	8.270e^-5	0.649	INTRON AdamTS-A
2L	14440367	2L_14440367_SNP [dm3] 2L_14440367_SNP [dm6]	T	C	8.293e^-5	0.649	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	23449858	3L_23449858_SNP [dm3] 3L_23456758_SNP [dm6]	C	A	8.349e^-5	0.649	INTERGENIC
3R	22614850	3R_22614850_SNP [dm3] 3R_26789128_SNP [dm6]	T	C	8.413e^-5	0.649	INTERGENIC
2R	12260988	2R_12260988_SNP [dm3] 2R_16373483_SNP [dm6]	T	G	8.445e^-5	0.649	INTERGENIC
3L	11520016	3L_11520016_SNP [dm3] 3L_11526916_SNP [dm6]	C	T	8.447e^-5	0.649	INTRON Mob2	TF binding site mE1_TFBS_HSA
3R	16619663	3R_16619663_SNP [dm3] 3R_20793941_SNP [dm6]	T	C	8.484e^-5	0.649	INTRON Syp
3L	7930542	3L_7930542_SNP [dm3] 3L_7937442_SNP [dm6]	T	A	8.496e^-5	0.649	DOWNSTREAM Srp9 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	17614529	2R_17614529_SNP [dm3] 2R_21727024_SNP [dm6]	C	A	8.562e^-5	0.649	DOWNSTREAM CR44750 INTERGENIC	transposable element FlyBase
X	8679104	X_8679104_SNP [dm3] X_8785071_SNP [dm6]	A	G	8.598e^-5	0.649	INTRON Lim1
2R	1673858	2R_1673858_SNP [dm3] 2R_5786353_SNP [dm6]	A	G	8.609e^-5	0.649	INTERGENIC	transposable element FlyBase
3R	13372488	3R_13372488_SNP [dm3] 3R_17546766_SNP [dm6]	C	T	8.609e^-5	0.649	UPSTREAM Prx3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13377203	3L_13377203_SNP [dm3] 3L_13384103_SNP [dm6]	T	C	8.684e^-5	0.65	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
2R	14438188	2R_14438188_SNP [dm3] 2R_18550683_SNP [dm6]	A	G	8.696e^-5	0.65	INTERGENIC
3R	10664833	3R_10664833_SNP [dm3] 3R_14839111_SNP [dm6]	C	T	8.836e^-5	0.657	INTRON btsz
3R	23544971	3R_23544971_SNP [dm3] 3R_27719249_SNP [dm6]	C	T	8.861e^-5	0.657	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	23420943	3L_23420943_SNP [dm3] 3L_23427843_SNP [dm6]	A	C	8.900e^-5	0.657	INTERGENIC
3R	21465759	3R_21465759_SNP [dm3] 3R_25640037_SNP [dm6]	T	A	8.949e^-5	0.657	INTRON jigr1
3L	23315019	3L_23315019_SNP [dm3] 3L_23321919_SNP [dm6]	A	T	9.039e^-5	0.657	INTRON alpha-Cat	transposable element FlyBase
3R	11293036	3R_11293036_SNP [dm3] 3R_15467314_SNP [dm6]	C	T	9.138e^-5	0.657	INTRON AdamTS-A
3R	9842015	3R_9842015_SNP [dm3] 3R_14016293_SNP [dm6]	T	G	9.139e^-5	0.657	INTRON rdx
2L	4454802	2L_4454802_SNP [dm3] 2L_4454802_SNP [dm6]	A	T	9.151e^-5	0.657	NON_SYNONYMOUS_CODING CG15434 UPSTREAM CG15440 DOWNSTREAM Gs1l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
3L	8891499	3L_8891499_SNP [dm3] 3L_8898399_SNP [dm6]	C	T	9.157e^-5	0.657	INTRON TrpA1
3R	13438776	3R_13438776_SNP [dm3] 3R_17613054_SNP [dm6]	A	C	9.189e^-5	0.657	SYNONYMOUS_CODING CG34281 UPSTREAM CG14327
3L	23326727	3L_23326727_SNP [dm3] 3L_23333627_SNP [dm6]	C	G	9.207e^-5	0.657	INTRON alpha-Cat	transposable element FlyBase
3R	17687571	3R_17687571_SNP [dm3] 3R_21861849_SNP [dm6]	T	C	9.212e^-5	0.657	UPSTREAM CR45644 EXON CR45645	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	23762071	3L_23762071_SNP [dm3] 3L_23768971_SNP [dm6]	T	C	9.313e^-5	0.659	INTERGENIC	TF binding site mE1_TFBS_inv
2R	3330890	2R_3330890_SNP [dm3] 2R_7443385_SNP [dm6]	A	G	9.373e^-5	0.659	DOWNSTREAM kappaB-Ras & 2 others INTRON sPLA2
3R	13109171	3R_13109171_SNP [dm3] 3R_17283449_SNP [dm6]	C	G	9.433e^-5	0.659	UPSTREAM CG31418 INTERGENIC
2L	16576748	2L_16576748_SNP [dm3] 2L_16576748_SNP [dm6]	G	A	9.476e^-5	0.659	INTRON CG42389
2L	10703024	2L_10703024_SNP [dm3] 2L_10703024_SNP [dm6]	T	A	9.515e^-5	0.659	UPSTREAM CG6415 INTRON Lip2
3R	16104661	3R_16104661_SNP [dm3] 3R_20278939_SNP [dm6]	C	T	9.519e^-5	0.659	INTRON cic
2R	15547233	2R_15547233_SNP [dm3] 2R_19659728_SNP [dm6]	A	C	9.591e^-5	0.659	DOWNSTREAM CG15125 & 1 other EXON CR44504	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10754134	3R_10754134_SNP [dm3] 3R_14928412_SNP [dm6]	A	G	9.666e^-5	0.659	INTERGENIC
3L	15391687	3L_15391687_SNP [dm3] 3L_15398587_SNP [dm6]	A	T	9.674e^-5	0.659	INTERGENIC
3L	9133471	3L_9133471_SNP [dm3] 3L_9140371_SNP [dm6]	G	A	9.680e^-5	0.659	SYNONYMOUS_CODING nwk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10639634	2L_10639634_SNP [dm3] 2L_10639634_SNP [dm6]	T	C	9.698e^-5	0.659	UPSTREAM CG31872 DOWNSTREAM CR45351 INTERGENIC
2R	16307786	2R_16307786_SNP [dm3] 2R_20420281_SNP [dm6]	C	T	9.704e^-5	0.659	INTERGENIC
3R	25542972	3R_25542972_SNP [dm3] 3R_29717250_SNP [dm6]	C	T	9.724e^-5	0.659	UPSTREAM Obp99b INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	13036611	3R_13036611_SNP [dm3] 3R_17210889_SNP [dm6]	A	G	9.727e^-5	0.659	INTERGENIC
3L	7548688	3L_7548688_SNP [dm3] 3L_7555588_SNP [dm6]	T	C	9.833e^-5	0.662	DOWNSTREAM CG14837 INTERGENIC
3L	14497452	3L_14497452_SNP [dm3] 3L_14504352_SNP [dm6]	A	G	9.841e^-5	0.662	INTRON bbg	transposable element FlyBase
3L	12241914	3L_12241914_SNP [dm3] 3L_12248814_SNP [dm6]	G	A	9.947e^-5	0.663	INTRON app
2R	17987012	2R_17987012_SNP [dm3] 2R_22099507_SNP [dm6]	G	T	9.957e^-5	0.663	UTR_5_PRIME CG11073	TF binding site BDTNP1_TFBS_dl
3R	10703003	3R_10703003_SNP [dm3] 3R_14877281_SNP [dm6]	A	G	1.003e^-4	0.663	INTERGENIC
3L	22087490	3L_22087490_SNP [dm3] 3L_22094390_SNP [dm6]	T	C	1.005e^-4	0.663	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6281768	2L_6281768_SNP [dm3] 2L_6281768_SNP [dm6]	G	A	1.010e^-4	0.663	INTRON Ddr
3R	8386305	3R_8386305_SNP [dm3] 3R_12560583_SNP [dm6]	G	C	1.010e^-4	0.663	NON_SYNONYMOUS_CODING Octbeta2R
3R	6257443	3R_6257443_SNP [dm3] 3R_10431721_SNP [dm6]	A	C	1.011e^-4	0.663	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10634878	3R_10634878_SNP [dm3] 3R_14809156_SNP [dm6]	G	A	1.020e^-4	0.667	INTRON btsz	TF binding site mE1_TFBS_cad
3L	7548608	3L_7548608_SNP [dm3] 3L_7555508_SNP [dm6]	T	C	1.027e^-4	0.669	DOWNSTREAM CG14837 INTERGENIC
2L	8786457	2L_8786457_DEL [dm3] 2L_8786457_DEL [dm6]	TG	T	1.032e^-4	0.67	INTERGENIC
X	8859130	X_8859130_DEL [dm3] X_8965097_DEL [dm6]	TT	T	1.039e^-4	0.672	UPSTREAM mir-4964 INTRON rdgA
3R	15738197	3R_15738197_SNP [dm3] 3R_19912475_SNP [dm6]	A	G	1.052e^-4	0.673	SYNONYMOUS_CODING RhoGAP92B	TF binding site mE1_TFBS_cad
2R	10622250	2R_10622250_SNP [dm3] 2R_14734745_SNP [dm6]	A	T	1.060e^-4	0.673	INTERGENIC
2R	14438135	2R_14438135_DEL [dm3] 2R_18550630_DEL [dm6]	ACCAATGTTCTGAAATTTAA...	A	1.063e^-4	0.673	INTERGENIC
2L	14440370	2L_14440370_SNP [dm3] 2L_14440370_SNP [dm6]	C	T	1.063e^-4	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13376114	3L_13376114_SNP [dm3] 3L_13383014_SNP [dm6]	C	G	1.063e^-4	0.673	SYNONYMOUS_CODING ImpL1	TF binding site mE1_TFBS_cad
3R	9334947	3R_9334947_SNP [dm3] 3R_13509225_SNP [dm6]	T	G	1.066e^-4	0.673	INTERGENIC
3L	23643378	3L_23643378_SNP [dm3] 3L_23650278_SNP [dm6]	G	A	1.071e^-4	0.673	DOWNSTREAM AGO3 INTRON AGO3
2R	18984802	2R_18984802_SNP [dm3] 2R_23097279_SNP [dm6]	C	T	1.072e^-4	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	8867428	3R_8867428_SNP [dm3] 3R_13041706_SNP [dm6]	A	T	1.073e^-4	0.673	UTR_5_PRIME snk UPSTREAM CG11670
3R	20587758	3R_20587758_SNP [dm3] 3R_24762036_SNP [dm6]	A	G	1.076e^-4	0.673	INTRON AstA	TF binding site mE1_TFBS_cad
2L	10703210	2L_10703210_SNP [dm3] 2L_10703210_SNP [dm6]	T	G	1.082e^-4	0.674	UPSTREAM CG6415 INTRON Lip2	TF binding site BDTNP1_TFBS_dl
2R	17307298	2R_17307298_SNP [dm3] 2R_21419793_SNP [dm6]	A	G	1.085e^-4	0.674	INTRON Sdc
3L	23476346	3L_23476346_SNP [dm3] 3L_23483246_SNP [dm6]	T	A	1.091e^-4	0.675	INTERGENIC	transposable element FlyBase
3L	23627874	3L_23627874_SNP [dm3] 3L_23634774_SNP [dm6]	G	C	1.097e^-4	0.677	INTRON AGO3
3L	11776952	3L_11776952_SNP [dm3] 3L_11783852_SNP [dm6]	C	T	1.101e^-4	0.677	SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	1785705	2L_1785705_SNP [dm3] 2L_1785705_SNP [dm6]	T	G	1.118e^-4	0.681	DOWNSTREAM Gr22e INTERGENIC
X	11609827	X_11609827_SNP [dm3] X_11715794_SNP [dm6]	G	T	1.119e^-4	0.681	UPSTREAM Amun & 1 other DOWNSTREAM CR45618 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	16396486	2L_16396486_SNP [dm3] 2L_16396486_SNP [dm6]	G	A	1.125e^-4	0.681	INTERGENIC
2R	10628914	2R_10628914_SNP [dm3] 2R_14741409_SNP [dm6]	C	A	1.127e^-4	0.681	INTRON CG12858	TF binding site mE1_TFBS_cad
2L	10703207	2L_10703207_SNP [dm3] 2L_10703207_SNP [dm6]	T	A	1.130e^-4	0.681	UPSTREAM CG6415 INTRON Lip2	TF binding site BDTNP1_TFBS_dl
X	20677084	X_20677084_SNP [dm3] X_20806057_SNP [dm6]	G	T	1.135e^-4	0.681	INTRON shakB
3R	26418690	3R_26418690_SNP [dm3] 3R_30592968_SNP [dm6]	G	C	1.138e^-4	0.681	DOWNSTREAM CG2246 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	23584397	3L_23584397_SNP [dm3] 3L_23591297_SNP [dm6]	C	T	1.146e^-4	0.681	INTRON AGO3
3L	7823438	3L_7823438_SNP [dm3] 3L_7830338_SNP [dm6]	T	C	1.150e^-4	0.681	INTRON Pdp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	17223620	3R_17223620_SNP [dm3] 3R_21397898_SNP [dm6]	G	T	1.151e^-4	0.681	SYNONYMOUS_CODING CG6475
2R	7136842	2R_7136842_SNP [dm3] 2R_11249337_SNP [dm6]	G	T	1.155e^-4	0.681	UPSTREAM CG43112 DOWNSTREAM CG34227 INTERGENIC
3R	9497033	3R_9497033_SNP [dm3] 3R_13671311_SNP [dm6]	A	G	1.157e^-4	0.681	INTRON Task6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7355909	2R_7355909_SNP [dm3] 2R_11468404_SNP [dm6]	A	G	1.159e^-4	0.681	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8623827	2L_8623827_SNP [dm3] 2L_8623827_SNP [dm6]	T	C	1.162e^-4	0.681	INTRON Sema-1a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	2886034	X_2886034_SNP [dm3] X_2992001_SNP [dm6]	C	A	1.163e^-4	0.681	INTRON kirre
2R	19707256	2R_19707256_SNP [dm3] 2R_23819733_SNP [dm6]	T	C	1.166e^-4	0.681	UPSTREAM CG5549 INTERGENIC
2R	17318589	2R_17318589_SNP [dm3] 2R_21431084_SNP [dm6]	T	C	1.172e^-4	0.683	INTRON Sdc
2R	7136984	2R_7136984_DEL [dm3] 2R_11249479_DEL [dm6]	AATATGGAACG...	A	1.190e^-4	0.688	UPSTREAM CG43112 & 1 other DOWNSTREAM CG34227 INTERGENIC
3L	18214116	3L_18214116_SNP [dm3] 3L_18221016_SNP [dm6]	A	T	1.191e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_zfh1
3L	12703444	3L_12703444_SNP [dm3] 3L_12710344_SNP [dm6]	G	A	1.195e^-4	0.688	DOWNSTREAM mirr INTERGENIC
X	9107672	X_9107672_SNP [dm3] X_9213639_SNP [dm6]	G	C	1.197e^-4	0.688	INTERGENIC
3R	13036608	3R_13036608_SNP [dm3] 3R_17210886_SNP [dm6]	A	G	1.200e^-4	0.688	INTERGENIC
X	1764099	X_1764099_SNP [dm3] X_1870066_SNP [dm6]	G	A	1.209e^-4	0.691	NON_SYNONYMOUS_CODING CG14803	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	9760960	2L_9760960_SNP [dm3] 2L_9760960_SNP [dm6]	T	C	1.218e^-4	0.692	SYNONYMOUS_CODING zf30C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9602505	2L_9602505_SNP [dm3] 2L_9602505_SNP [dm6]	G	C	1.218e^-4	0.692	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17229274	X_17229274_SNP [dm3] X_17335241_SNP [dm6]	T	C	1.223e^-4	0.692	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	9989227	X_9989227_SNP [dm3] X_10095194_SNP [dm6]	A	C	1.228e^-4	0.692	INTRON RhoU
3R	13673135	3R_13673135_SNP [dm3] 3R_17847413_SNP [dm6]	G	A	1.231e^-4	0.692	INTRON tinc
3R	13091426	3R_13091426_SNP [dm3] 3R_17265704_SNP [dm6]	C	A	1.232e^-4	0.692	UTR_3_PRIME CG44257 UPSTREAM beat-IIb
X	14540207	X_14540207_SNP [dm3] X_14646174_SNP [dm6]	T	A	1.239e^-4	0.693	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15547071	2R_15547071_SNP [dm3] 2R_19659566_SNP [dm6]	G	T	1.242e^-4	0.693	SYNONYMOUS_CODING CG15125 DOWNSTREAM CR44504	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6695846	3L_6695846_SNP [dm3] 3L_6702746_SNP [dm6]	A	T	1.247e^-4	0.694	INTRON SP1173	TF binding site BDTNP1_TFBS_twi
3L	12302013	3L_12302013_SNP [dm3] 3L_12308913_SNP [dm6]	A	G	1.259e^-4	0.697	INTERGENIC
3L	3982044	3L_3982044_SNP [dm3] 3L_3982044_SNP [dm6]	A	G	1.260e^-4	0.697	INTERGENIC	regulatory region REDfly_CRMs
3L	14500211	3L_14500211_SNP [dm3] 3L_14507111_SNP [dm6]	T	C	1.272e^-4	0.698	INTRON bbg
3R	19999429	3R_19999429_SNP [dm3] 3R_24173707_SNP [dm6]	G	C	1.274e^-4	0.698	INTRON CG13606
3R	9020974	3R_9020974_SNP [dm3] 3R_13195252_SNP [dm6]	A	T	1.279e^-4	0.698	INTERGENIC
3L	12338458	3L_12338458_SNP [dm3] 3L_12345358_SNP [dm6]	G	C	1.281e^-4	0.698	INTRON CrzR
X	9107662	X_9107662_SNP [dm3] X_9213629_SNP [dm6]	A	T	1.284e^-4	0.698	INTERGENIC
3L	23574910	3L_23574910_SNP [dm3] 3L_23581810_SNP [dm6]	C	A	1.284e^-4	0.698	INTRON AGO3	transposable element FlyBase
3L	13376252	3L_13376252_SNP [dm3] 3L_13383152_SNP [dm6]	C	G	1.289e^-4	0.699	SYNONYMOUS_CODING ImpL1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10664785	3R_10664785_SNP [dm3] 3R_14839063_SNP [dm6]	A	C	1.295e^-4	0.699	INTRON btsz
3L	5835254	3L_5835254_SNP [dm3] 3L_5842154_SNP [dm6]	G	A	1.298e^-4	0.699	INTRON vn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6307099	3L_6307099_SNP [dm3] 3L_6313999_SNP [dm6]	C	T	1.308e^-4	0.699	INTERGENIC
2L	10720423	2L_10720423_SNP [dm3] 2L_10720423_SNP [dm6]	A	C	1.308e^-4	0.699	INTERGENIC
2R	12260877	2R_12260877_SNP [dm3] 2R_16373372_SNP [dm6]	A	G	1.324e^-4	0.699	INTERGENIC
2R	13858312	2R_13858312_SNP [dm3] 2R_17970807_SNP [dm6]	T	A	1.326e^-4	0.699	INTERGENIC
2L	18416263	2L_18416263_SNP [dm3] 2L_18416263_SNP [dm6]	G	T	1.327e^-4	0.699	INTERGENIC
X	4567417	X_4567417_SNP [dm3] X_4673384_SNP [dm6]	A	G	1.328e^-4	0.699	INTRON rap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20587585	3R_20587585_SNP [dm3] 3R_24761863_SNP [dm6]	A	G	1.332e^-4	0.699	INTRON AstA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10622258	2R_10622258_SNP [dm3] 2R_14734753_SNP [dm6]	T	C	1.333e^-4	0.699	INTERGENIC
3R	8691546	3R_8691546_SNP [dm3] 3R_12865824_SNP [dm6]	T	A	1.333e^-4	0.699	INTERGENIC
2L	10644197	2L_10644197_SNP [dm3] 2L_10644197_SNP [dm6]	C	A	1.333e^-4	0.699	DOWNSTREAM CG31872 INTRON CG18284
2R	17689342	2R_17689342_SNP [dm3] 2R_21801837_SNP [dm6]	T	C	1.340e^-4	0.699	UPSTREAM CG4386 INTERGENIC
2L	4443523	2L_4443523_SNP [dm3] 2L_4443523_SNP [dm6]	A	G	1.342e^-4	0.699	SYNONYMOUS_CODING morgue DOWNSTREAM CG15432	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	7515158	3R_7515158_SNP [dm3] 3R_11689436_SNP [dm6]	T	G	1.352e^-4	0.699	SYNONYMOUS_CODING CG6908 DOWNSTREAM CG18765
3R	16702647	3R_16702647_SNP [dm3] 3R_20876925_SNP [dm6]	A	T	1.355e^-4	0.699	UPSTREAM TotZ INTERGENIC
3R	17223646	3R_17223646_SNP [dm3] 3R_21397924_SNP [dm6]	C	T	1.356e^-4	0.699	NON_SYNONYMOUS_CODING CG6475
2L	14257237	2L_14257237_SNP [dm3] 2L_14257237_SNP [dm6]	T	C	1.359e^-4	0.699	INTERGENIC
2R	7136593	2R_7136593_SNP [dm3] 2R_11249088_SNP [dm6]	G	C	1.364e^-4	0.699	UPSTREAM CG43112 DOWNSTREAM CG34227 INTERGENIC
3L	7825073	3L_7825073_SNP [dm3] 3L_7831973_SNP [dm6]	T	C	1.366e^-4	0.699	INTRON Pdp1
2R	16935169	2R_16935169_SNP [dm3] 2R_21047664_SNP [dm6]	C	T	1.373e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	14821682	2R_14821682_SNP [dm3] 2R_18934177_SNP [dm6]	A	T	1.385e^-4	0.699	INTRON sano
2R	17614524	2R_17614524_SNP [dm3] 2R_21727019_SNP [dm6]	T	A	1.389e^-4	0.699	DOWNSTREAM CR44750 INTERGENIC	transposable element FlyBase
2R	18964721	2R_18964721_SNP [dm3] 2R_23077198_SNP [dm6]	C	G	1.390e^-4	0.699	SYNONYMOUS_CODING Art7 DOWNSTREAM CG3085	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18124837	2L_18124837_SNP [dm3] 2L_18124837_SNP [dm6]	C	G	1.392e^-4	0.699	NON_SYNONYMOUS_CODING CG31785 INTRON CG5758	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10754137	3R_10754137_SNP [dm3] 3R_14928415_SNP [dm6]	A	T	1.394e^-4	0.699	INTERGENIC
3L	5795740	3L_5795740_SNP [dm3] 3L_5802640_SNP [dm6]	G	A	1.397e^-4	0.699	UPSTREAM CG42272 INTRON S6k	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	13622314	2L_13622314_SNP [dm3] 2L_13622314_SNP [dm6]	T	A	1.399e^-4	0.699	INTRON kuz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	9684680	2R_9684680_SNP [dm3] 2R_13797175_SNP [dm6]	A	T	1.403e^-4	0.699	INTRON Cpr50Cb
3R	13041493	3R_13041493_INS [dm3] 3R_17215771_INS [dm6]	A	AC	1.408e^-4	0.699	INTERGENIC
2R	19782204	2R_19782204_SNP [dm3] 2R_23894681_SNP [dm6]	G	A	1.414e^-4	0.699	SYNONYMOUS_CODING Upf3 UPSTREAM CG17658	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	18779591	3R_18779591_SNP [dm3] 3R_22953869_SNP [dm6]	T	C	1.415e^-4	0.699	INTRON klg
3R	12759112	3R_12759112_SNP [dm3] 3R_16933390_SNP [dm6]	T	A	1.424e^-4	0.699	UTR_5_PRIME Abd-B INTRON Abd-B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	10354924	X_10354924_SNP [dm3] X_10460891_SNP [dm6]	A	T	1.428e^-4	0.699	DOWNSTREAM nocte INTRON Neb-cGP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	16563554	2R_16563554_SNP [dm3] 2R_20676049_SNP [dm6]	A	T	1.434e^-4	0.699	INTERGENIC
3R	13091712	3R_13091712_SNP [dm3] 3R_17265990_SNP [dm6]	C	G	1.436e^-4	0.699	UPSTREAM beat-IIb DOWNSTREAM CG44257 INTERGENIC
2L	811818	2L_811818_SNP [dm3] 2L_811818_SNP [dm6]	G	C	1.440e^-4	0.699	NON_SYNONYMOUS_CODING Dbp21E2 DOWNSTREAM Nnf1b
3R	17448347	3R_17448347_SNP [dm3] 3R_21622625_SNP [dm6]	A	G	1.444e^-4	0.699	UPSTREAM mir-998 & 1 other INTRON E2f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14438065	2R_14438065_SNP [dm3] 2R_18550560_SNP [dm6]	C	T	1.451e^-4	0.699	INTERGENIC
3R	8691523	3R_8691523_INS [dm3] 3R_12865801_INS [dm6]	T	TT	1.452e^-4	0.699	INTERGENIC
2L	10703180	2L_10703180_SNP [dm3] 2L_10703180_SNP [dm6]	T	A	1.454e^-4	0.699	UPSTREAM CG6415 INTRON Lip2	TF binding site BDTNP1_TFBS_dl
X	4126062	X_4126062_SNP [dm3] X_4232029_SNP [dm6]	A	T	1.455e^-4	0.699	INTERGENIC
2R	9353736	2R_9353736_SNP [dm3] 2R_13466231_SNP [dm6]	C	T	1.457e^-4	0.699	INTRON arr
3L	7215897	3L_7215897_DEL [dm3] 3L_7222797_DEL [dm6]	AA	A	1.467e^-4	0.699	EXON CR45410
2L	12496803	2L_12496803_SNP [dm3] 2L_12496803_SNP [dm6]	C	T	1.483e^-4	0.699	NON_SYNONYMOUS_CODING t-cup INTRON bun	TF binding site mE1_TFBS_GATAe
X	17229245	X_17229245_SNP [dm3] X_17335212_SNP [dm6]	C	T	1.487e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18175039	2R_18175039_SNP [dm3] 2R_22287534_SNP [dm6]	G	A	1.487e^-4	0.699	INTERGENIC	TF binding site mE1_TFBS_cad
3L	6308565	3L_6308565_SNP [dm3] 3L_6315465_SNP [dm6]	A	G	1.487e^-4	0.699	INTERGENIC	transposable element FlyBase
3L	23838485	3L_23838485_SNP [dm3] 3L_23845385_SNP [dm6]	C	T	1.490e^-4	0.699	INTRON CG40470
X	5856172	X_5856172_SNP [dm3] X_5962139_SNP [dm6]	T	G	1.491e^-4	0.699	NON_SYNONYMOUS_CODING fs_1_M3	TF binding site mE1_TFBS_chinmo
3L	23280494	3L_23280494_SNP [dm3] 3L_23287394_SNP [dm6]	A	T	1.494e^-4	0.699	UTR_3_PRIME nAChRalpha4
2R	9851748	2R_9851748_SNP [dm3] 2R_13964243_SNP [dm6]	T	C	1.499e^-4	0.699	UPSTREAM CG42806 & 1 other INTRON Cp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	13181881	X_13181881_SNP [dm3] X_13287848_SNP [dm6]	G	T	1.499e^-4	0.699	UPSTREAM CG15744 DOWNSTREAM CG15743 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	18078855	2L_18078855_SNP [dm3] 2L_18078855_SNP [dm6]	C	A	1.500e^-4	0.699	INTRON Arr1	TF binding site mE1_TFBS_chinmo
X	11609828	X_11609828_SNP [dm3] X_11715795_SNP [dm6]	C	T	1.501e^-4	0.699	UPSTREAM Amun & 1 other DOWNSTREAM CR45618 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	10267045	3L_10267045_SNP [dm3] 3L_10273945_SNP [dm6]	C	T	1.501e^-4	0.699	SYNONYMOUS_CODING Or67d
X	22149820	X_22149820_INS [dm3] X_22747984_INS [dm6]	C	CGCC	1.503e^-4	0.699	INTRON CR44997
3L	5835073	3L_5835073_SNP [dm3] 3L_5841973_SNP [dm6]	A	T	1.510e^-4	0.699	INTRON vn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	13622312	2L_13622312_SNP [dm3] 2L_13622312_SNP [dm6]	A	C	1.512e^-4	0.699	INTRON kuz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	18985607	2R_18985607_SNP [dm3] 2R_23098084_SNP [dm6]	C	G	1.518e^-4	0.699	INTERGENIC
3L	14327074	3L_14327074_SNP [dm3] 3L_14333974_SNP [dm6]	C	G	1.520e^-4	0.699	INTRON fz	TF binding site BDTNP1_TFBS_twi
3L	16136358	3L_16136358_SNP [dm3] 3L_16143258_SNP [dm6]	G	A	1.520e^-4	0.699	SYNONYMOUS_CODING CG32152 UTR_5_PRIME CG5151 INTRON CG5151	TF binding site mE1_TFBS_sens
2L	12250761	2L_12250761_SNP [dm3] 2L_12250761_SNP [dm6]	A	G	1.531e^-4	0.701	INTRON aret
3L	16756078	3L_16756078_SNP [dm3] 3L_16762978_SNP [dm6]	A	C	1.537e^-4	0.701	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	12139447	2L_12139447_SNP [dm3] 2L_12139447_SNP [dm6]	A	G	1.538e^-4	0.701	INTRON Gr33a
2L	788945	2L_788945_SNP [dm3] 2L_788945_SNP [dm6]	C	T	1.553e^-4	0.701	DOWNSTREAM CG3544 INTRON Pkg21D	TF binding site mE1_TFBS_chinmo
2R	10004638	2R_10004638_SNP [dm3] 2R_14117133_SNP [dm6]	G	T	1.559e^-4	0.701	INTRON Prosap
3R	6779241	3R_6779241_SNP [dm3] 3R_10953519_SNP [dm6]	A	G	1.559e^-4	0.701	INTERGENIC
2L	14573574	2L_14573574_SNP [dm3] 2L_14573574_SNP [dm6]	T	C	1.560e^-4	0.701	INTERGENIC
X	4567416	X_4567416_SNP [dm3] X_4673383_SNP [dm6]	A	G	1.565e^-4	0.701	INTRON rap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9840693	3R_9840693_SNP [dm3] 3R_14014971_SNP [dm6]	G	A	1.565e^-4	0.701	INTRON rdx
2R	16993661	2R_16993661_DEL [dm3] 2R_21106156_DEL [dm6]	GCTCA	G	1.582e^-4	0.701	INTRON ktub
X	7209504	X_7209504_SNP [dm3] X_7315471_SNP [dm6]	T	A	1.590e^-4	0.701	INTRON CR44357 & 2 others
2L	14334153	2L_14334153_SNP [dm3] 2L_14334153_SNP [dm6]	T	A	1.591e^-4	0.701	UPSTREAM CG33090 DOWNSTREAM ms_2_34Fe INTERGENIC
2R	13807883	2R_13807883_SNP [dm3] 2R_17920378_SNP [dm6]	G	A	1.592e^-4	0.701	INTRON Elk
2L	10959847	2L_10959847_SNP [dm3] 2L_10959847_SNP [dm6]	C	G	1.594e^-4	0.701	INTRON dpr2
2L	9628232	2L_9628232_SNP [dm3] 2L_9628232_SNP [dm6]	A	C	1.605e^-4	0.701	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3834947	3L_3834947_SNP [dm3] 3L_3834947_SNP [dm6]	T	A	1.605e^-4	0.701	INTRON enc
2R	7140330	2R_7140330_SNP [dm3] 2R_11252825_SNP [dm6]	C	A	1.607e^-4	0.701	NON_SYNONYMOUS_CODING Cpr47Ea DOWNSTREAM Or47a
2L	5397451	2L_5397451_DEL [dm3] 2L_5397451_DEL [dm6]	CC	C	1.630e^-4	0.701	INTERGENIC
3L	8921031	3L_8921031_SNP [dm3] 3L_8927931_SNP [dm6]	G	A	1.639e^-4	0.701	INTRON Tsp66E
3R	10713369	3R_10713369_SNP [dm3] 3R_14887647_SNP [dm6]	T	A	1.648e^-4	0.701	UTR_3_PRIME CG33331 INTRON CG33332	TF binding site mE1_TFBS_inv
3L	13376135	3L_13376135_SNP [dm3] 3L_13383035_SNP [dm6]	T	C	1.648e^-4	0.701	SYNONYMOUS_CODING ImpL1	TF binding site mE1_TFBS_cad
X	2559648	X_2559648_SNP [dm3] X_2665615_SNP [dm6]	G	C	1.650e^-4	0.701	INTRON sgg	TF binding site mE1_TFBS_Trl
2R	7137122	2R_7137122_SNP [dm3] 2R_11249617_SNP [dm6]	T	C	1.651e^-4	0.701	UTR_5_PRIME CG43112 UPSTREAM Or47a
2L	11946349	2L_11946349_SNP [dm3] 2L_11946349_SNP [dm6]	A	G	1.653e^-4	0.701	NON_SYNONYMOUS_CODING Cry
3L	5835074	3L_5835074_SNP [dm3] 3L_5841974_SNP [dm6]	G	A	1.656e^-4	0.701	INTRON vn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	16754495	3L_16754495_SNP [dm3] 3L_16761395_SNP [dm6]	C	T	1.657e^-4	0.701	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	18946793	2R_18946793_SNP [dm3] 2R_23059270_SNP [dm6]	T	A	1.660e^-4	0.701	SYNONYMOUS_CODING CG44252 DOWNSTREAM CG44253
3R	18659122	3R_18659122_SNP [dm3] 3R_22833400_SNP [dm6]	G	A	1.660e^-4	0.701	INTERGENIC
2L	548964	2L_548964_SNP [dm3] 2L_548964_SNP [dm6]	A	T	1.663e^-4	0.701	INTRON Ets21C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	16104595	3R_16104595_SNP [dm3] 3R_20278873_SNP [dm6]	C	A	1.667e^-4	0.701	INTRON cic
X	16159162	X_16159162_SNP [dm3] X_16265129_SNP [dm6]	G	T	1.668e^-4	0.701	DOWNSTREAM CG12507 INTERGENIC
3L	5834992	3L_5834992_SNP [dm3] 3L_5841892_SNP [dm6]	A	G	1.679e^-4	0.701	INTRON vn	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	16610796	2R_16610796_SNP [dm3] 2R_20723291_SNP [dm6]	T	C	1.679e^-4	0.701	DOWNSTREAM CR44660 INTRON dpr
3L	14618465	3L_14618465_SNP [dm3] 3L_14625365_SNP [dm6]	G	A	1.687e^-4	0.701	INTRON CG9628	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	10659423	3R_10659423_SNP [dm3] 3R_14833701_SNP [dm6]	T	C	1.688e^-4	0.701	INTRON btsz
2L	9867397	2L_9867397_SNP [dm3] 2L_9867397_SNP [dm6]	T	C	1.689e^-4	0.701	INTRON nAChRalpha6
3R	13129286	3R_13129286_SNP [dm3] 3R_17303564_SNP [dm6]	G	T	1.690e^-4	0.701	INTERGENIC
3R	10854434	3R_10854434_SNP [dm3] 3R_15028712_SNP [dm6]	G	A	1.690e^-4	0.701	INTERGENIC
3L	16736288	3L_16736288_SNP [dm3] 3L_16743188_SNP [dm6]	G	T	1.693e^-4	0.701	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	11609362	X_11609362_SNP [dm3] X_11715329_SNP [dm6]	T	C	1.699e^-4	0.701	UTR_5_PRIME Amun UPSTREAM Amun DOWNSTREAM CR45618	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
3R	13082423	3R_13082423_SNP [dm3] 3R_17256701_SNP [dm6]	A	G	1.706e^-4	0.701	INTRON beat-IIb
2L	13503418	2L_13503418_SNP [dm3] 2L_13503418_SNP [dm6]	C	G	1.707e^-4	0.701	UTR_3_PRIME B4
2R	10995362	2R_10995362_SNP [dm3] 2R_15107857_SNP [dm6]	C	T	1.720e^-4	0.701	INTERGENIC
3R	11224214	3R_11224214_SNP [dm3] 3R_15398492_SNP [dm6]	T	A	1.725e^-4	0.701	INTRON Rbp
2L	12652191	2L_12652191_SNP [dm3] 2L_12652191_SNP [dm6]	G	A	1.728e^-4	0.701	INTERGENIC
3L	9497758	3L_9497758_SNP [dm3] 3L_9504658_SNP [dm6]	A	T	1.729e^-4	0.701	INTRON path	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	10720425	2L_10720425_SNP [dm3] 2L_10720425_SNP [dm6]	G	A	1.730e^-4	0.701	INTERGENIC
3L	6564182	3L_6564182_SNP [dm3] 3L_6571082_SNP [dm6]	T	G	1.736e^-4	0.701	NON_SYNONYMOUS_CODING jv INTRON CG18769
3L	23805246	3L_23805246_SNP [dm3] 3L_23812146_SNP [dm6]	A	T	1.737e^-4	0.701	INTERGENIC	transposable element FlyBase
X	1778385	X_1778385_SNP [dm3] X_1884352_SNP [dm6]	G	T	1.737e^-4	0.701	NON_SYNONYMOUS_CODING trr	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	13377128	3L_13377128_SNP [dm3] 3L_13384028_SNP [dm6]	A	G	1.738e^-4	0.701	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
2L	10781063	2L_10781063_DEL [dm3] 2L_10781063_DEL [dm6]	CGCCAC	C	1.740e^-4	0.701	INTRON CG31869
3R	1891889	3R_1891889_SNP [dm3] 3R_6066167_SNP [dm6]	T	C	1.740e^-4	0.701	INTERGENIC
3R	11308509	3R_11308509_SNP [dm3] 3R_15482787_SNP [dm6]	A	G	1.743e^-4	0.701	SYNONYMOUS_CODING CG14870 UPSTREAM Rh6	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
X	5180680	X_5180680_SNP [dm3] X_5286647_SNP [dm6]	G	A	1.746e^-4	0.701	INTERGENIC
3L	11297118	3L_11297118_SNP [dm3] 3L_11304018_SNP [dm6]	C	T	1.748e^-4	0.701	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1184377	2R_1184377_DEL [dm3] 2R_5296872_DEL [dm6]	ATA	A	1.750e^-4	0.701	DOWNSTREAM d4 INTERGENIC	transposable element FlyBase
3R	14838838	3R_14838838_SNP [dm3] 3R_19013116_SNP [dm6]	T	C	1.750e^-4	0.701	INTRON gukh	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	11016262	2R_11016262_SNP [dm3] 2R_15128757_SNP [dm6]	C	T	1.752e^-4	0.701	UPSTREAM chn INTRON chn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
3R	10702387	3R_10702387_SNP [dm3] 3R_14876665_SNP [dm6]	T	C	1.753e^-4	0.701	INTERGENIC
3L	14324964	3L_14324964_SNP [dm3] 3L_14331864_SNP [dm6]	A	G	1.759e^-4	0.701	INTRON fz
2R	16993629	2R_16993629_SNP [dm3] 2R_21106124_SNP [dm6]	T	A	1.761e^-4	0.701	INTRON ktub
3R	4010401	3R_4010401_SNP [dm3] 3R_8184679_SNP [dm6]	C	G	1.764e^-4	0.701	INTERGENIC
3R	25978210	3R_25978210_SNP [dm3] 3R_30152488_SNP [dm6]	G	A	1.766e^-4	0.701	DOWNSTREAM CG11498 INTRON CG15529	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7930365	3L_7930365_SNP [dm3] 3L_7937265_SNP [dm6]	G	T	1.767e^-4	0.701	DOWNSTREAM Srp9 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	17700688	3R_17700688_INS [dm3] 3R_21874966_INS [dm6]	G	GAGTTG	1.770e^-4	0.701	UPSTREAM CG6656 DOWNSTREAM CG31178 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	23865459	3L_23865459_SNP [dm3] 3L_23872359_SNP [dm6]	G	C	1.782e^-4	0.701	INTRON CG40470
X	10940587	X_10940587_SNP [dm3] X_11046554_SNP [dm6]	T	A	1.783e^-4	0.701	INTRON CG11160
3R	13125097	3R_13125097_SNP [dm3] 3R_17299375_SNP [dm6]	A	T	1.785e^-4	0.701	INTERGENIC
3R	13091664	3R_13091664_SNP [dm3] 3R_17265942_SNP [dm6]	T	A	1.790e^-4	0.701	UPSTREAM beat-IIb DOWNSTREAM CG44257 INTERGENIC
3R	6508455	3R_6508455_SNP [dm3] 3R_10682733_SNP [dm6]	A	T	1.791e^-4	0.701	EXON CR44230	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9610339	2L_9610339_SNP [dm3] 2L_9610339_SNP [dm6]	C	T	1.795e^-4	0.702	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad
2R	7524307	2R_7524307_SNP [dm3] 2R_11636802_SNP [dm6]	T	G	1.801e^-4	0.702	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4107967	3L_4107967_SNP [dm3] 3L_4107967_SNP [dm6]	G	A	1.809e^-4	0.703	UPSTREAM Ack & 1 other DOWNSTREAM Fit1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10668992	3R_10668992_SNP [dm3] 3R_14843270_SNP [dm6]	T	C	1.811e^-4	0.703	INTRON btsz
3R	18659111	3R_18659111_SNP [dm3] 3R_22833389_SNP [dm6]	C	A	1.819e^-4	0.704	INTERGENIC
3R	13035614	3R_13035614_SNP [dm3] 3R_17209892_SNP [dm6]	C	A	1.819e^-4	0.704	INTERGENIC
X	11609820	X_11609820_SNP [dm3] X_11715787_SNP [dm6]	A	T	1.828e^-4	0.704	UPSTREAM Amun & 1 other DOWNSTREAM CR45618 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	14532279	3L_14532279_SNP [dm3] 3L_14539179_SNP [dm6]	T	C	1.833e^-4	0.704	INTRON Mpcp
3L	24219398	3L_24219398_SNP [dm3] 3L_24226298_SNP [dm6]	G	C	1.841e^-4	0.704	INTRON Snap25
X	4656298	X_4656298_SNP [dm3] X_4762265_SNP [dm6]	A	T	1.841e^-4	0.704	INTERGENIC
3R	9747974	3R_9747974_DEL [dm3] 3R_13922252_DEL [dm6]	CCCCGCACCACGCAT...	A	1.846e^-4	0.704	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16754498	3L_16754498_SNP [dm3] 3L_16761398_SNP [dm6]	G	T	1.846e^-4	0.704	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	5051534	3L_5051534_SNP [dm3] 3L_5051534_SNP [dm6]	A	G	1.847e^-4	0.704	UPSTREAM CR43884 INTRON Con
3L	1177567	3L_1177567_SNP [dm3] 3L_1177567_SNP [dm6]	T	C	1.855e^-4	0.705	UPSTREAM bab2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	3927429	2L_3927429_DEL [dm3] 2L_3927429_DEL [dm6]	TT	T	1.857e^-4	0.705	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	9989228	X_9989228_SNP [dm3] X_10095195_SNP [dm6]	T	C	1.863e^-4	0.706	INTRON RhoU
3L	19335856	3L_19335856_SNP [dm3] 3L_19342756_SNP [dm6]	T	A	1.870e^-4	0.707	UTR_3_PRIME CG32206
2R	16960099	2R_16960099_SNP [dm3] 2R_21072594_SNP [dm6]	A	G	1.873e^-4	0.707	DOWNSTREAM CR44704 INTRON CG10527	TF binding site mE1_TFBS_Trl
3L	13883872	3L_13883872_SNP [dm3] 3L_13890772_SNP [dm6]	T	C	1.881e^-4	0.708	INTRON dysc
3R	16998842	3R_16998842_SNP [dm3] 3R_21173120_SNP [dm6]	C	T	1.883e^-4	0.708	INTRON SNF4Agamma	TF binding site mE1_TFBS_HSA
2L	13354165	2L_13354165_SNP [dm3] 2L_13354165_SNP [dm6]	T	A	1.888e^-4	0.708	SYNONYMOUS_CODING CG9395
2R	14086613	2R_14086613_SNP [dm3] 2R_18199108_SNP [dm6]	T	C	1.899e^-4	0.709	INTERGENIC
3R	12951339	3R_12951339_SNP [dm3] 3R_17125617_SNP [dm6]	G	A	1.903e^-4	0.709	UPSTREAM cher DOWNSTREAM CG45079 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2R	18946680	2R_18946680_SNP [dm3] 2R_23059157_SNP [dm6]	T	A	1.908e^-4	0.709	NON_SYNONYMOUS_CODING CG44252 DOWNSTREAM CG44253
2R	18946848	2R_18946848_SNP [dm3] 2R_23059325_SNP [dm6]	G	C	1.908e^-4	0.709	DOWNSTREAM CG44253 INTRON CG44252
3L	16749549	3L_16749549_SNP [dm3] 3L_16756449_SNP [dm6]	G	A	1.908e^-4	0.709	DOWNSTREAM CG42852 INTERGENIC
3L	14319521	3L_14319521_SNP [dm3] 3L_14326421_SNP [dm6]	A	C	1.921e^-4	0.712	UPSTREAM CR45025 INTRON fz
2R	18946838	2R_18946838_SNP [dm3] 2R_23059315_SNP [dm6]	G	T	1.943e^-4	0.713	DOWNSTREAM CG44253 INTRON CG44252
3L	20955944	3L_20955944_SNP [dm3] 3L_20962844_SNP [dm6]	A	G	1.944e^-4	0.713	UTR_3_PRIME CG12983 UPSTREAM CG10587	TF binding site BDTNP1_TFBS_prd mE1_TFBS_sens
2R	7569479	2R_7569479_SNP [dm3] 2R_11681974_SNP [dm6]	C	T	1.964e^-4	0.713	INTRON Buffy	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	23440520	3L_23440520_SNP [dm3] 3L_23447420_SNP [dm6]	T	G	1.964e^-4	0.713	INTERGENIC	transposable element FlyBase
X	13271134	X_13271134_INS [dm3] X_13377101_INS [dm6]	G	GG	1.965e^-4	0.713	INTRON CG1640
3L	9021413	3L_9021413_SNP [dm3] 3L_9028313_SNP [dm6]	T	A	1.980e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	5856194	X_5856194_SNP [dm3] X_5962161_SNP [dm6]	A	G	1.980e^-4	0.713	SYNONYMOUS_CODING fs_1_M3	TF binding site mE1_TFBS_chinmo
3L	18847088	3L_18847088_SNP [dm3] 3L_18853988_SNP [dm6]	A	T	1.986e^-4	0.713	UPSTREAM CR45387 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10628924	2R_10628924_DEL [dm3] 2R_14741419_DEL [dm6]	TAAT	T	1.987e^-4	0.713	INTRON CG12858	TF binding site mE1_TFBS_cad
2L	18614333	2L_18614333_SNP [dm3] 2L_18614333_SNP [dm6]	T	A	1.995e^-4	0.713	DOWNSTREAM CG15161 INTERGENIC
3L	10373349	3L_10373349_SNP [dm3] 3L_10380249_SNP [dm6]	T	C	2.000e^-4	0.713	INTERGENIC
2L	6293153	2L_6293153_SNP [dm3] 2L_6293153_SNP [dm6]	A	C	2.011e^-4	0.713	INTRON Ddr
2L	4307960	2L_4307960_SNP [dm3] 2L_4307960_SNP [dm6]	T	C	2.021e^-4	0.713	SYNONYMOUS_CODING tutl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7030888	3L_7030888_SNP [dm3] 3L_7037788_SNP [dm6]	C	T	2.027e^-4	0.713	INTRON Mp
X	8902510	X_8902510_SNP [dm3] X_9008477_SNP [dm6]	C	T	2.038e^-4	0.713	INTRON rdgA & 1 other
3L	23202799	3L_23202799_SNP [dm3] 3L_23209699_SNP [dm6]	C	T	2.053e^-4	0.713	INTRON nAChRalpha4	transposable element FlyBase
2R	15296354	2R_15296354_SNP [dm3] 2R_19408849_SNP [dm6]	A	G	2.056e^-4	0.713	DOWNSTREAM hts INTRON hts
3L	16655330	3L_16655330_SNP [dm3] 3L_16662230_SNP [dm6]	T	G	2.061e^-4	0.713	UPSTREAM Baldspot DOWNSTREAM Galphaf INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	13926005	2L_13926005_SNP [dm3] 2L_13926005_SNP [dm6]	T	C	2.062e^-4	0.713	INTRON Ance-3
3R	4760352	3R_4760352_DEL [dm3] 3R_8934630_DEL [dm6]	ATTGCTTATCAA...	A	2.080e^-4	0.713	UPSTREAM osk EXON CR44020	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	18770602	3R_18770602_SNP [dm3] 3R_22944880_SNP [dm6]	A	T	2.095e^-4	0.713	INTRON klg	TF binding site mE1_TFBS_chinmo
2R	9750977	2R_9750977_SNP [dm3] 2R_13863472_SNP [dm6]	G	A	2.106e^-4	0.713	UTR_3_PRIME CG13344 DOWNSTREAM shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15963384	2L_15963384_SNP [dm3] 2L_15963384_SNP [dm6]	T	C	2.107e^-4	0.713	UPSTREAM beat-Ib INTERGENIC
3L	23573451	3L_23573451_DEL [dm3] 3L_23580351_DEL [dm6]	TCTT	T	2.111e^-4	0.713	INTRON AGO3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	16194078	X_16194078_SNP [dm3] X_16300045_SNP [dm6]	G	T	2.117e^-4	0.713	SYNONYMOUS_CODING CG3632
3L	10861913	3L_10861913_SNP [dm3] 3L_10868813_SNP [dm6]	G	A	2.117e^-4	0.713	INTRON tna
2R	7130086	2R_7130086_SNP [dm3] 2R_11242581_SNP [dm6]	A	T	2.120e^-4	0.713	UPSTREAM Listericin INTERGENIC
2R	17130447	2R_17130447_SNP [dm3] 2R_21242942_SNP [dm6]	A	G	2.123e^-4	0.713	INTRON ASPP
3L	6308490	3L_6308490_SNP [dm3] 3L_6315390_SNP [dm6]	T	G	2.125e^-4	0.713	INTERGENIC	transposable element FlyBase
2R	16967221	2R_16967221_INS [dm3] 2R_21079716_INS [dm6]	A	AGGCAAATAACAAATTAAGA...	2.125e^-4	0.713	UPSTREAM Treh INTRON Treh
3L	1139131	3L_1139131_SNP [dm3] 3L_1139131_SNP [dm6]	T	C	2.125e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	9679633	3L_9679633_SNP [dm3] 3L_9686533_SNP [dm6]	T	C	2.127e^-4	0.713	DOWNSTREAM CG16719 INTRON CG6767
2L	11945783	2L_11945783_SNP [dm3] 2L_11945783_SNP [dm6]	G	A	2.134e^-4	0.713	SYNONYMOUS_CODING Cry	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3027919	3L_3027919_SNP [dm3] 3L_3027919_SNP [dm6]	A	G	2.134e^-4	0.713	INTERGENIC
3R	14006024	3R_14006024_SNP [dm3] 3R_18180302_SNP [dm6]	A	G	2.138e^-4	0.713	SYNONYMOUS_CODING cdm DOWNSTREAM PP2A-B'
3L	13087661	3L_13087661_SNP [dm3] 3L_13094561_SNP [dm6]	A	G	2.141e^-4	0.713	INTERGENIC
X	4125102	X_4125102_DEL [dm3] X_4231069_DEL [dm6]	GCGACCAAATGT...	G	2.149e^-4	0.713	INTERGENIC
3L	11824013	3L_11824013_SNP [dm3] 3L_11830913_SNP [dm6]	C	A	2.156e^-4	0.713	DOWNSTREAM CG7264 INTRON CycA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	6777127	2L_6777127_SNP [dm3] 2L_6777127_SNP [dm6]	G	A	2.158e^-4	0.713	SYNONYMOUS_CODING CG17378	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17542604	2L_17542604_SNP [dm3] 2L_17542604_SNP [dm6]	G	A	2.158e^-4	0.713	DOWNSTREAM CR43304 INTERGENIC
3L	12313321	3L_12313321_SNP [dm3] 3L_12320221_SNP [dm6]	T	A	2.161e^-4	0.713	INTERGENIC
3R	20296146	3R_20296146_SNP [dm3] 3R_24470424_SNP [dm6]	A	G	2.162e^-4	0.713	DOWNSTREAM CG31128 INTERGENIC
2R	18027999	2R_18027999_SNP [dm3] 2R_22140494_SNP [dm6]	T	C	2.177e^-4	0.713	SYNONYMOUS_CODING gom INTRON a	TF binding site mE1_TFBS_chinmo
2R	16963248	2R_16963248_SNP [dm3] 2R_21075743_SNP [dm6]	T	G	2.186e^-4	0.713	UPSTREAM Treh INTRON Treh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	19999324	3R_19999324_DEL [dm3] 3R_24173602_DEL [dm6]	GAA	G	2.187e^-4	0.713	INTRON CG13606
3L	9330417	3L_9330417_SNP [dm3] 3L_9337317_SNP [dm6]	T	A	2.189e^-4	0.713	INTRON PGRP-LA
3L	13377119	3L_13377119_SNP [dm3] 3L_13384019_SNP [dm6]	T	G	2.189e^-4	0.713	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
3R	13915559	3R_13915559_SNP [dm3] 3R_18089837_SNP [dm6]	G	T	2.197e^-4	0.713	UPSTREAM sr INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	11609597	X_11609597_SNP [dm3] X_11715564_SNP [dm6]	T	C	2.197e^-4	0.713	UTR_5_PRIME Amun UPSTREAM Amun DOWNSTREAM CR45618	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
2R	18990462	2R_18990462_SNP [dm3] 2R_23102939_SNP [dm6]	A	G	2.199e^-4	0.713	SYNONYMOUS_CODING Gr59c
3R	26418653	3R_26418653_SNP [dm3] 3R_30592931_SNP [dm6]	C	T	2.202e^-4	0.713	DOWNSTREAM CG2246 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10659255	3R_10659255_SNP [dm3] 3R_14833533_SNP [dm6]	A	G	2.204e^-4	0.713	INTRON btsz
3L	7828877	3L_7828877_SNP [dm3] 3L_7835777_SNP [dm6]	A	C	2.210e^-4	0.713	INTRON Pdp1
3L	14498699	3L_14498699_SNP [dm3] 3L_14505599_SNP [dm6]	C	G	2.214e^-4	0.713	INTRON bbg
3L	7828182	3L_7828182_SNP [dm3] 3L_7835082_SNP [dm6]	G	C	2.216e^-4	0.713	INTRON Pdp1
2R	8235392	2R_8235392_SNP [dm3] 2R_12347887_SNP [dm6]	T	G	2.223e^-4	0.713	SYNONYMOUS_CODING ana3	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	6152586	X_6152586_SNP [dm3] X_6258553_SNP [dm6]	A	C	2.224e^-4	0.713	DOWNSTREAM Spx INTRON schlank	TF binding site mE1_TFBS_sens
3R	27430242	3R_27430242_SNP [dm3] 3R_31604520_SNP [dm6]	G	A	2.225e^-4	0.713	INTRON CycG	TF binding site mE1_TFBS_sens
3L	7028066	3L_7028066_SNP [dm3] 3L_7034966_SNP [dm6]	T	C	2.227e^-4	0.713	SPLICE_SITE_REGION Mp INTRON Mp
2R	9350994	2R_9350994_SNP [dm3] 2R_13463489_SNP [dm6]	C	G	2.232e^-4	0.713	INTRON arr
2R	14682080	2R_14682080_SNP [dm3] 2R_18794575_SNP [dm6]	A	C	2.232e^-4	0.713	UTR_3_PRIME CG15080 DOWNSTREAM MFS15
3R	25626717	3R_25626717_SNP [dm3] 3R_29800995_SNP [dm6]	G	A	2.234e^-4	0.713	UTR_3_PRIME Ice DOWNSTREAM CG7834	TF binding site mE1_TFBS_cad
2L	4372825	2L_4372825_SNP [dm3] 2L_4372825_SNP [dm6]	A	T	2.240e^-4	0.713	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	13621409	2L_13621409_SNP [dm3] 2L_13621409_SNP [dm6]	G	C	2.240e^-4	0.713	INTRON kuz
3L	12689414	3L_12689414_SNP [dm3] 3L_12696314_SNP [dm6]	T	A	2.250e^-4	0.713	INTRON mirr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13087608	3L_13087608_SNP [dm3] 3L_13094508_SNP [dm6]	A	G	2.259e^-4	0.713	INTERGENIC
X	9110738	X_9110738_SNP [dm3] X_9216705_SNP [dm6]	G	A	2.259e^-4	0.713	UPSTREAM CG15369 DOWNSTREAM CG15368 & 1 other INTERGENIC
2R	18028008	2R_18028008_SNP [dm3] 2R_22140503_SNP [dm6]	C	T	2.261e^-4	0.713	SYNONYMOUS_CODING gom INTRON a	TF binding site mE1_TFBS_chinmo
3R	12758600	3R_12758600_SNP [dm3] 3R_16932878_SNP [dm6]	C	A	2.262e^-4	0.713	NON_SYNONYMOUS_CODING Abd-B INTRON Abd-B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2404606	3L_2404606_SNP [dm3] 3L_2404606_SNP [dm6]	G	A	2.264e^-4	0.713	SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	9412047	2R_9412047_SNP [dm3] 2R_13524542_SNP [dm6]	A	G	2.266e^-4	0.713	UPSTREAM CG13332 INTRON Vmat
3R	3727112	3R_3727112_SNP [dm3] 3R_7901390_SNP [dm6]	T	C	2.271e^-4	0.713	SYNONYMOUS_CODING mRpS9 DOWNSTREAM wtrw
2L	12651099	2L_12651099_SNP [dm3] 2L_12651099_SNP [dm6]	C	G	2.277e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14326793	3L_14326793_SNP [dm3] 3L_14333693_SNP [dm6]	G	C	2.277e^-4	0.713	INTRON fz
3L	13377173	3L_13377173_SNP [dm3] 3L_13384073_SNP [dm6]	A	T	2.286e^-4	0.713	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
3L	19213190	3L_19213190_DEL [dm3] 3L_19220090_DEL [dm6]	TCTTTCGCGCAACAGA...	T	2.292e^-4	0.713	INTRON fz2
3R	3735058	3R_3735058_SNP [dm3] 3R_7909336_SNP [dm6]	T	A	2.296e^-4	0.713	UTR_3_PRIME Taf7 DOWNSTREAM Prat & 1 other
3L	7193790	3L_7193790_SNP [dm3] 3L_7200690_SNP [dm6]	T	A	2.297e^-4	0.713	INTERGENIC
2L	8623828	2L_8623828_SNP [dm3] 2L_8623828_SNP [dm6]	T	C	2.298e^-4	0.713	INTRON Sema-1a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12080458	3L_12080458_SNP [dm3] 3L_12087358_SNP [dm6]	C	G	2.298e^-4	0.713	INTERGENIC
3L	3926720	3L_3926720_SNP [dm3] 3L_3926720_SNP [dm6]	T	A	2.298e^-4	0.713	INTRON Eip63F-1
2L	2242356	2L_2242356_INS [dm3] 2L_2242356_INS [dm6]	A	ATCGA	2.299e^-4	0.713	UPSTREAM CG4267 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	18914631	2L_18914631_DEL [dm3] 2L_18914631_DEL [dm6]	GC	T	2.303e^-4	0.713	INTERGENIC
3R	22772042	3R_22772042_SNP [dm3] 3R_26946320_SNP [dm6]	T	C	2.304e^-4	0.713	DOWNSTREAM tRNA:CR31071 INTRON CG14252	TF binding site mE1_TFBS_sens
3L	8157993	3L_8157993_SNP [dm3] 3L_8164893_SNP [dm6]	T	C	2.307e^-4	0.713	UPSTREAM CG13675 INTRON CG13675
2R	7137129	2R_7137129_SNP [dm3] 2R_11249624_SNP [dm6]	C	A	2.310e^-4	0.713	UTR_5_PRIME CG43112 UPSTREAM Or47a
3R	15407511	3R_15407511_SNP [dm3] 3R_19581789_SNP [dm6]	C	A	2.311e^-4	0.713	INTRON Dys
3R	9841009	3R_9841009_SNP [dm3] 3R_14015287_SNP [dm6]	A	T	2.312e^-4	0.713	INTRON rdx
2R	16731462	2R_16731462_SNP [dm3] 2R_20843957_SNP [dm6]	T	C	2.314e^-4	0.713	INTERGENIC
2R	11005310	2R_11005310_SNP [dm3] 2R_15117805_SNP [dm6]	A	T	2.315e^-4	0.713	INTRON chn	TF binding site BDTNP1_TFBS_dl
3L	5835201	3L_5835201_SNP [dm3] 3L_5842101_SNP [dm6]	G	T	2.318e^-4	0.713	INTRON vn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	7565492	2R_7565492_SNP [dm3] 2R_11677987_SNP [dm6]	C	A	2.318e^-4	0.713	UTR_3_PRIME Tret1-2 INTRON Roc2
2L	9619369	2L_9619369_SNP [dm3] 2L_9619369_SNP [dm6]	C	A	2.320e^-4	0.713	INTRON GlcAT-S
3L	2400019	3L_2400019_SNP [dm3] 3L_2400019_SNP [dm6]	T	C	2.320e^-4	0.713	UPSTREAM CG45186 INTRON CG45186
2R	10109567	2R_10109567_SNP [dm3] 2R_14222062_SNP [dm6]	A	C	2.321e^-4	0.713	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12123607	2L_12123607_SNP [dm3] 2L_12123607_SNP [dm6]	G	A	2.322e^-4	0.713	INTRON CG17211
2R	17780009	2R_17780009_SNP [dm3] 2R_21892504_SNP [dm6]	A	G	2.332e^-4	0.713	INTRON Fili
2R	15047156	2R_15047156_SNP [dm3] 2R_19159651_SNP [dm6]	T	C	2.333e^-4	0.713	INTRON ena
3L	3922845	3L_3922845_SNP [dm3] 3L_3922845_SNP [dm6]	T	A	2.340e^-4	0.713	INTRON Eip63F-1
3L	7723144	3L_7723144_SNP [dm3] 3L_7730044_SNP [dm6]	G	T	2.352e^-4	0.713	SYNONYMOUS_CODING CG8492 INTRON CG32373
X	14395089	X_14395089_SNP [dm3] X_14501056_SNP [dm6]	A	G	2.352e^-4	0.713	INTERGENIC
2R	19654842	2R_19654842_SNP [dm3] 2R_23767319_SNP [dm6]	C	T	2.356e^-4	0.713	INTRON CG9850
3L	8891584	3L_8891584_SNP [dm3] 3L_8898484_SNP [dm6]	C	T	2.356e^-4	0.713	INTRON TrpA1
2R	7078537	2R_7078537_SNP [dm3] 2R_11191032_SNP [dm6]	G	C	2.358e^-4	0.713	INTRON shn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9363725	2R_9363725_SNP [dm3] 2R_13476220_SNP [dm6]	G	A	2.362e^-4	0.713	INTRON arr
X	3661082	X_3661082_SNP [dm3] X_3767049_SNP [dm6]	C	G	2.363e^-4	0.713	INTRON tlk
3R	918436	3R_918436_SNP [dm3] 3R_5092714_SNP [dm6]	C	T	2.373e^-4	0.713	INTERGENIC
2L	10633330	2L_10633330_SNP [dm3] 2L_10633330_SNP [dm6]	T	C	2.376e^-4	0.713	INTRON CG7329	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	5881640	3L_5881640_DEL [dm3] 3L_5888540_DEL [dm6]	AA	A	2.378e^-4	0.713	INTERGENIC
3L	8620453	3L_8620453_SNP [dm3] 3L_8627353_SNP [dm6]	T	C	2.382e^-4	0.713	INTRON Zasp66
3R	10666968	3R_10666968_SNP [dm3] 3R_14841246_SNP [dm6]	C	T	2.395e^-4	0.713	INTRON btsz
3L	9918251	3L_9918251_SNP [dm3] 3L_9925151_SNP [dm6]	T	A	2.395e^-4	0.713	INTRON CG34356
3R	24912345	3R_24912345_SNP [dm3] 3R_29086623_SNP [dm6]	G	A	2.395e^-4	0.713	INTRON CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc
3R	14923711	3R_14923711_SNP [dm3] 3R_19097989_SNP [dm6]	G	A	2.401e^-4	0.713	INTRON CG6040
2L	9872848	2L_9872848_SNP [dm3] 2L_9872848_SNP [dm6]	C	T	2.411e^-4	0.713	INTRON nAChRalpha6
3L	8892127	3L_8892127_SNP [dm3] 3L_8899027_SNP [dm6]	C	T	2.412e^-4	0.713	INTRON TrpA1
3L	7215695	3L_7215695_SNP [dm3] 3L_7222595_SNP [dm6]	C	T	2.419e^-4	0.713	UPSTREAM CR45410 INTERGENIC
3L	10712295	3L_10712295_SNP [dm3] 3L_10719195_SNP [dm6]	A	T	2.420e^-4	0.713	INTERGENIC
2R	9351004	2R_9351004_SNP [dm3] 2R_13463499_SNP [dm6]	C	A	2.420e^-4	0.713	INTRON arr
2R	7565453	2R_7565453_SNP [dm3] 2R_11677948_SNP [dm6]	G	A	2.421e^-4	0.713	UTR_3_PRIME Tret1-2 INTRON Roc2	TF binding site mE1_TFBS_cad
3L	23682327	3L_23682327_SNP [dm3] 3L_23689227_SNP [dm6]	C	T	2.432e^-4	0.713	INTRON AGO3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
3L	9557206	3L_9557206_SNP [dm3] 3L_9564106_SNP [dm6]	A	C	2.436e^-4	0.713	INTRON CG42673
3L	2400021	3L_2400021_SNP [dm3] 3L_2400021_SNP [dm6]	G	T	2.439e^-4	0.713	UPSTREAM CG45186 INTRON CG45186
X	13271127	X_13271127_SNP [dm3] X_13377094_SNP [dm6]	C	G	2.440e^-4	0.713	INTRON CG1640
2L	18071348	2L_18071348_SNP [dm3] 2L_18071348_SNP [dm6]	C	A	2.441e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_inv
2R	15047157	2R_15047157_SNP [dm3] 2R_19159652_SNP [dm6]	G	A	2.441e^-4	0.713	INTRON ena
3R	16685212	3R_16685212_SNP [dm3] 3R_20859490_SNP [dm6]	C	T	2.443e^-4	0.713	SYNONYMOUS_CODING Ir93a DOWNSTREAM CG3822
X	17229228	X_17229228_SNP [dm3] X_17335195_SNP [dm6]	T	G	2.446e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	789106	2L_789106_SNP [dm3] 2L_789106_SNP [dm6]	A	T	2.449e^-4	0.713	DOWNSTREAM CG3544 INTRON Pkg21D	TF binding site mE1_TFBS_chinmo
X	17219926	X_17219926_SNP [dm3] X_17325893_SNP [dm6]	G	T	2.450e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	13883875	3L_13883875_SNP [dm3] 3L_13890775_SNP [dm6]	A	T	2.460e^-4	0.713	INTRON dysc
3L	2847420	3L_2847420_SNP [dm3] 3L_2847420_SNP [dm6]	T	C	2.461e^-4	0.713	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	11608270	X_11608270_SNP [dm3] X_11714237_SNP [dm6]	T	C	2.463e^-4	0.713	UPSTREAM Amun INTRON Amun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	11522431	3L_11522431_SNP [dm3] 3L_11529331_SNP [dm6]	T	A	2.466e^-4	0.713	INTRON Mob2
3R	26430044	3R_26430044_SNP [dm3] 3R_30604322_SNP [dm6]	A	G	2.469e^-4	0.713	NON_SYNONYMOUS_CODING PH4alphaNE3 DOWNSTREAM CG31021
3L	16736290	3L_16736290_SNP [dm3] 3L_16743190_SNP [dm6]	A	G	2.471e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	5680338	3L_5680338_SNP [dm3] 3L_5687238_SNP [dm6]	G	A	2.484e^-4	0.713	INTRON sif	TF binding site mE1_TFBS_chinmo
2R	14295538	2R_14295538_SNP [dm3] 2R_18408033_SNP [dm6]	A	G	2.491e^-4	0.713	SYNONYMOUS_CODING GstE8 DOWNSTREAM GstE7	TF binding site mE1_TFBS_Trl
2L	12496780	2L_12496780_SNP [dm3] 2L_12496780_SNP [dm6]	T	C	2.503e^-4	0.713	SYNONYMOUS_CODING t-cup INTRON bun	TF binding site mE1_TFBS_GATAe
3L	6308602	3L_6308602_SNP [dm3] 3L_6315502_SNP [dm6]	C	T	2.505e^-4	0.713	INTERGENIC	transposable element FlyBase
X	4124855	X_4124855_SNP [dm3] X_4230822_SNP [dm6]	C	T	2.511e^-4	0.713	INTERGENIC
2R	15047121	2R_15047121_SNP [dm3] 2R_19159616_SNP [dm6]	T	C	2.519e^-4	0.713	INTRON ena
2L	19441100	2L_19441100_SNP [dm3] 2L_19441100_SNP [dm6]	G	T	2.524e^-4	0.713	UPSTREAM CG10237 & 1 other INTRON CG10237	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11545374	3L_11545374_SNP [dm3] 3L_11552274_SNP [dm6]	G	A	2.528e^-4	0.713	DOWNSTREAM mir-4968 INTRON Mob2	TF binding site BDTNP1_TFBS_dl
3L	7194053	3L_7194053_SNP [dm3] 3L_7200953_SNP [dm6]	T	G	2.528e^-4	0.713	INTERGENIC
3R	13091705	3R_13091705_SNP [dm3] 3R_17265983_SNP [dm6]	G	A	2.531e^-4	0.713	UPSTREAM beat-IIb DOWNSTREAM CG44257 INTERGENIC
3R	4762231	3R_4762231_SNP [dm3] 3R_8936509_SNP [dm6]	C	T	2.540e^-4	0.713	NON_SYNONYMOUS_CODING osk
3L	9918562	3L_9918562_SNP [dm3] 3L_9925462_SNP [dm6]	C	T	2.541e^-4	0.713	INTRON CG34356
2R	10622345	2R_10622345_SNP [dm3] 2R_14734840_SNP [dm6]	T	C	2.547e^-4	0.713	INTERGENIC
2L	10639541	2L_10639541_SNP [dm3] 2L_10639541_SNP [dm6]	C	T	2.554e^-4	0.713	UPSTREAM CG31872 EXON CR45351
3L	7444454	3L_7444454_DEL [dm3] 3L_7451354_DEL [dm6]	AGCA	A	2.558e^-4	0.713	CODON_DELETION CG33278 INTRON CG42458	TF binding site mE1_TFBS_chinmo
3R	19435326	3R_19435326_SNP [dm3] 3R_23609604_SNP [dm6]	A	G	2.562e^-4	0.713	INTRON CG31145
X	9299240	X_9299240_SNP [dm3] X_9405207_SNP [dm6]	C	T	2.562e^-4	0.713	INTRON mgl
2R	16624226	2R_16624226_SNP [dm3] 2R_20736721_SNP [dm6]	A	G	2.562e^-4	0.713	INTRON dpr
3L	14324958	3L_14324958_SNP [dm3] 3L_14331858_SNP [dm6]	G	A	2.577e^-4	0.713	INTRON fz
3R	26099396	3R_26099396_SNP [dm3] 3R_30273674_SNP [dm6]	C	A	2.577e^-4	0.713	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	12290933	2L_12290933_SNP [dm3] 2L_12290933_SNP [dm6]	A	T	2.583e^-4	0.713	INTRON aret	TF binding site BDTNP1_TFBS_twi
3R	7526660	3R_7526660_SNP [dm3] 3R_11700938_SNP [dm6]	G	C	2.583e^-4	0.713	NON_SYNONYMOUS_CODING CG14718	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18078806	2L_18078806_SNP [dm3] 2L_18078806_SNP [dm6]	A	T	2.584e^-4	0.713	INTRON Arr1	TF binding site mE1_TFBS_chinmo
2R	9850450	2R_9850450_SNP [dm3] 2R_13962945_SNP [dm6]	A	G	2.588e^-4	0.713	INTRON Cp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12498362	3L_12498362_DEL [dm3] 3L_12505262_DEL [dm6]	ATCA	A	2.592e^-4	0.713	UTR_3_PRIME vih DOWNSTREAM CG10654	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10053330	2L_10053330_MNP [dm3] 2L_10053330_MNP [dm6]	TGG	ATA	2.592e^-4	0.713	UPSTREAM CR44875 & 1 other INTERGENIC
3L	7723132	3L_7723132_SNP [dm3] 3L_7730032_SNP [dm6]	T	G	2.596e^-4	0.713	SYNONYMOUS_CODING CG8492 INTRON CG32373
3L	12047520	3L_12047520_SNP [dm3] 3L_12054420_SNP [dm6]	C	T	2.599e^-4	0.713	INTRON rols
3R	13091587	3R_13091587_SNP [dm3] 3R_17265865_SNP [dm6]	G	C	2.599e^-4	0.713	UPSTREAM beat-IIb DOWNSTREAM CG44257 INTERGENIC
3L	12337618	3L_12337618_SNP [dm3] 3L_12344518_SNP [dm6]	G	A	2.600e^-4	0.713	INTRON CrzR
2L	3160193	2L_3160193_SNP [dm3] 2L_3160193_SNP [dm6]	A	G	2.601e^-4	0.713	UPSTREAM Mad INTRON gkt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	14509427	3L_14509427_SNP [dm3] 3L_14516327_SNP [dm6]	G	C	2.602e^-4	0.713	INTRON bbg
3L	23438911	3L_23438911_SNP [dm3] 3L_23445811_SNP [dm6]	A	T	2.604e^-4	0.713	INTERGENIC
3R	9865823	3R_9865823_SNP [dm3] 3R_14040101_SNP [dm6]	C	T	2.604e^-4	0.713	INTERGENIC
3L	15871375	3L_15871375_SNP [dm3] 3L_15878275_SNP [dm6]	C	T	2.611e^-4	0.713	INTRON pHCl
3R	24250245	3R_24250245_SNP [dm3] 3R_28424523_SNP [dm6]	C	T	2.615e^-4	0.713	INTRON beat-VI
2L	4294524	2L_4294524_SNP [dm3] 2L_4294524_SNP [dm6]	C	G	2.615e^-4	0.713	INTRON tutl
3L	14497565	3L_14497565_SNP [dm3] 3L_14504465_SNP [dm6]	A	G	2.617e^-4	0.713	INTRON bbg	transposable element FlyBase
3R	18765514	3R_18765514_SNP [dm3] 3R_22939792_SNP [dm6]	G	C	2.618e^-4	0.713	INTRON klg
X	17364796	X_17364796_SNP [dm3] X_17470763_SNP [dm6]	A	T	2.619e^-4	0.713	INTRON CG43658
2L	9308565	2L_9308565_SNP [dm3] 2L_9308565_SNP [dm6]	G	A	2.623e^-4	0.713	INTERGENIC
X	21318313	X_21318313_SNP [dm3] X_21447286_SNP [dm6]	T	A	2.636e^-4	0.713	INTRON CG42343	TF binding site mE1_TFBS_chinmo
3R	14032698	3R_14032698_SNP [dm3] 3R_18206976_SNP [dm6]	C	A	2.636e^-4	0.713	INTRON CG7985
X	19479098	X_19479098_SNP [dm3] X_19585065_SNP [dm6]	C	G	2.639e^-4	0.713	NON_SYNONYMOUS_CODING CG14204
2L	1652589	2L_1652589_SNP [dm3] 2L_1652589_SNP [dm6]	C	T	2.654e^-4	0.713	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5883050	2L_5883050_SNP [dm3] 2L_5883050_SNP [dm6]	T	G	2.654e^-4	0.713	UPSTREAM CG44574 INTERGENIC
2L	14451655	2L_14451655_SNP [dm3] 2L_14451655_SNP [dm6]	T	C	2.664e^-4	0.713	UPSTREAM CG15283 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	7573331	3L_7573331_SNP [dm3] 3L_7580231_SNP [dm6]	T	C	2.674e^-4	0.713	INTERGENIC
3R	9080850	3R_9080850_SNP [dm3] 3R_13255128_SNP [dm6]	G	A	2.676e^-4	0.713	INTRON Ace
3R	11861031	3R_11861031_SNP [dm3] 3R_16035309_SNP [dm6]	T	G	2.679e^-4	0.713	INTRON pnr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	9321397	2R_9321397_SNP [dm3] 2R_13433892_SNP [dm6]	A	C	2.683e^-4	0.713	UPSTREAM Ser8 DOWNSTREAM CG30065 INTRON CG42321
3L	13377129	3L_13377129_SNP [dm3] 3L_13384029_SNP [dm6]	C	G	2.683e^-4	0.713	UPSTREAM CG14110 DOWNSTREAM ImpL1 INTERGENIC
3L	11548337	3L_11548337_INS [dm3] 3L_11555237_INS [dm6]	T	TAACATAAATAACTTTAAAC...	2.684e^-4	0.713	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	4126368	X_4126368_INS [dm3] X_4232335_INS [dm6]	G	GG	2.688e^-4	0.713	INTERGENIC
2L	564164	2L_564164_SNP [dm3] 2L_564164_SNP [dm6]	A	G	2.689e^-4	0.713	UTR_5_PRIME CG2794 UPSTREAM CG11835	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	12848201	3L_12848201_SNP [dm3] 3L_12855101_SNP [dm6]	G	A	2.691e^-4	0.713	INTRON Ent3
2L	14440214	2L_14440214_SNP [dm3] 2L_14440214_SNP [dm6]	T	C	2.691e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15296399	2R_15296399_SNP [dm3] 2R_19408894_SNP [dm6]	A	T	2.692e^-4	0.713	UTR_3_PRIME hts DOWNSTREAM hts INTRON hts
2L	9605344	2L_9605344_SNP [dm3] 2L_9605344_SNP [dm6]	A	C	2.693e^-4	0.713	INTERGENIC	regulatory region REDfly_CRMs
2L	4688257	2L_4688257_SNP [dm3] 2L_4688257_SNP [dm6]	G	A	2.694e^-4	0.713	SYNONYMOUS_CODING Elba3 DOWNSTREAM CG3251	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	13991989	2L_13991989_SNP [dm3] 2L_13991989_SNP [dm6]	T	C	2.699e^-4	0.713	INTRON rk
3R	7644470	3R_7644470_SNP [dm3] 3R_11818748_SNP [dm6]	T	G	2.705e^-4	0.713	SYNONYMOUS_CODING glo UPSTREAM CoVa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_sens
2L	21900778	2L_21900778_SNP [dm3] 2L_21900778_SNP [dm6]	A	T	2.711e^-4	0.713	INTERGENIC
2L	9250278	2L_9250278_SNP [dm3] 2L_9250278_SNP [dm6]	A	C	2.714e^-4	0.713	UTR_3_PRIME aust DOWNSTREAM CR43734 & 1 other
2L	14440199	2L_14440199_SNP [dm3] 2L_14440199_SNP [dm6]	G	A	2.719e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9728552	3L_9728552_SNP [dm3] 3L_9735452_SNP [dm6]	A	G	2.720e^-4	0.713	INTRON CG42268
3L	12847102	3L_12847102_SNP [dm3] 3L_12854002_SNP [dm6]	T	A	2.720e^-4	0.713	UTR_5_PRIME Ent3 DOWNSTREAM Wbp2
3L	7620131	3L_7620131_SNP [dm3] 3L_7627031_SNP [dm6]	G	A	2.721e^-4	0.713	INTRON CG33275
2L	11812977	2L_11812977_SNP [dm3] 2L_11812977_SNP [dm6]	G	A	2.721e^-4	0.713	INTRON CycY	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	11609872	X_11609872_SNP [dm3] X_11715839_SNP [dm6]	G	T	2.725e^-4	0.713	UPSTREAM Amun & 1 other DOWNSTREAM CR45618 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	16336002	2L_16336002_SNP [dm3] 2L_16336002_SNP [dm6]	T	C	2.730e^-4	0.713	SYNONYMOUS_CODING CG31817
2R	3333386	2R_3333386_SNP [dm3] 2R_7445881_SNP [dm6]	T	C	2.733e^-4	0.713	UPSTREAM kappaB-Ras & 1 other DOWNSTREAM fa2h INTERGENIC	TF binding site mE1_TFBS_ttk
X	9589538	X_9589538_SNP [dm3] X_9695505_SNP [dm6]	T	C	2.736e^-4	0.713	INTRON btd	TF binding site BDTNP1_TFBS_dl
X	19485201	X_19485201_SNP [dm3] X_19591168_SNP [dm6]	G	C	2.737e^-4	0.713	UPSTREAM CG14219 INTERGENIC
3L	1547490	3L_1547490_SNP [dm3] 3L_1547490_SNP [dm6]	C	A	2.740e^-4	0.713	UTR_5_PRIME Cct1 UPSTREAM Cct1 INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	6298940	2L_6298940_SNP [dm3] 2L_6298940_SNP [dm6]	A	C	2.746e^-4	0.713	INTRON Ddr
3L	11548344	3L_11548344_SNP [dm3] 3L_11555244_SNP [dm6]	G	A	2.746e^-4	0.713	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1019397	3L_1019397_DEL [dm3] 3L_1019397_DEL [dm6]	GCG	G	2.748e^-4	0.713	INTRON trio	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14348884	3L_14348884_SNP [dm3] 3L_14355784_SNP [dm6]	G	C	2.749e^-4	0.713	INTRON fz	TF binding site BDTNP1_TFBS_dl
X	16158163	X_16158163_SNP [dm3] X_16264130_SNP [dm6]	A	T	2.759e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10859939	3R_10859939_SNP [dm3] 3R_15034217_SNP [dm6]	A	T	2.759e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	10720413	2L_10720413_SNP [dm3] 2L_10720413_SNP [dm6]	T	G	2.767e^-4	0.713	INTERGENIC
3L	11458246	3L_11458246_SNP [dm3] 3L_11465146_SNP [dm6]	T	G	2.768e^-4	0.713	INTRON CG6140	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
3L	23447367	3L_23447367_SNP [dm3] 3L_23454267_SNP [dm6]	G	A	2.775e^-4	0.713	INTERGENIC
3R	15549186	3R_15549186_SNP [dm3] 3R_19723464_SNP [dm6]	A	T	2.775e^-4	0.713	INTERGENIC
3R	13111055	3R_13111055_SNP [dm3] 3R_17285333_SNP [dm6]	A	G	2.783e^-4	0.713	NON_SYNONYMOUS_CODING CG31419 DOWNSTREAM CG31418 & 1 other
2L	4511886	2L_4511886_SNP [dm3] 2L_4511886_SNP [dm6]	T	A	2.789e^-4	0.713	SPLICE_SITE_REGION dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8692970	2R_8692970_SNP [dm3] 2R_12805465_SNP [dm6]	A	T	2.800e^-4	0.713	INTERGENIC
3R	5742584	3R_5742584_SNP [dm3] 3R_9916862_SNP [dm6]	C	T	2.806e^-4	0.713	INTRON Glut4EF
X	17230698	X_17230698_SNP [dm3] X_17336665_SNP [dm6]	C	T	2.808e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	22727097	3R_22727097_SNP [dm3] 3R_26901375_SNP [dm6]	G	A	2.812e^-4	0.713	INTRON T48	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	3772078	3L_3772078_SNP [dm3] 3L_3772078_SNP [dm6]	T	A	2.812e^-4	0.713	INTRON CG32264
X	16100634	X_16100634_SNP [dm3] X_16206601_SNP [dm6]	C	A	2.819e^-4	0.713	INTERGENIC
2L	10469461	2L_10469461_SNP [dm3] 2L_10469461_SNP [dm6]	C	G	2.823e^-4	0.713	INTRON RluA-1
2R	18976001	2R_18976001_SNP [dm3] 2R_23088478_SNP [dm6]	T	C	2.829e^-4	0.713	DOWNSTREAM CG13538 INTERGENIC
2R	7413297	2R_7413297_SNP [dm3] 2R_11525792_SNP [dm6]	T	A	2.836e^-4	0.713	INTRON en	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	18659124	3R_18659124_SNP [dm3] 3R_22833402_SNP [dm6]	G	T	2.839e^-4	0.713	INTERGENIC
2R	7563170	2R_7563170_SNP [dm3] 2R_11675665_SNP [dm6]	A	T	2.840e^-4	0.713	UPSTREAM Tret1-2 DOWNSTREAM Tret1-1 INTRON Roc2
2L	9654295	2L_9654295_SNP [dm3] 2L_9654295_SNP [dm6]	C	T	2.841e^-4	0.713	SYNONYMOUS_CODING Apoltp
2R	16960330	2R_16960330_SNP [dm3] 2R_21072825_SNP [dm6]	T	A	2.842e^-4	0.713	UPSTREAM CG10527 DOWNSTREAM CR44704 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	19005035	2R_19005035_SNP [dm3] 2R_23117512_SNP [dm6]	C	T	2.842e^-4	0.713	INTERGENIC
3R	13091551	3R_13091551_SNP [dm3] 3R_17265829_SNP [dm6]	T	A	2.848e^-4	0.713	UPSTREAM beat-IIb DOWNSTREAM CG44257 INTERGENIC
3L	13087345	3L_13087345_SNP [dm3] 3L_13094245_SNP [dm6]	A	C	2.851e^-4	0.713	INTERGENIC
3R	10705109	3R_10705109_SNP [dm3] 3R_14879387_SNP [dm6]	G	A	2.854e^-4	0.713	UPSTREAM CG3631 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10754729	3L_10754729_SNP [dm3] 3L_10761629_SNP [dm6]	A	T	2.860e^-4	0.713	INTERGENIC
2L	19104878	2L_19104878_SNP [dm3] 2L_19104878_SNP [dm6]	T	A	2.860e^-4	0.713	INTRON Lim3	TF binding site mE1_TFBS_cad
2R	12239796	2R_12239796_SNP [dm3] 2R_16352291_SNP [dm6]	C	T	2.866e^-4	0.713	INTERGENIC
X	15860198	X_15860198_SNP [dm3] X_15966165_SNP [dm6]	G	C	2.878e^-4	0.713	UPSTREAM mir-927 INTRON mmd
2R	16960522	2R_16960522_SNP [dm3] 2R_21073017_SNP [dm6]	A	T	2.888e^-4	0.713	UPSTREAM CG10527 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	16960540	2R_16960540_SNP [dm3] 2R_21073035_SNP [dm6]	G	A	2.888e^-4	0.713	UPSTREAM CG10527 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
2R	16960593	2R_16960593_SNP [dm3] 2R_21073088_SNP [dm6]	C	A	2.888e^-4	0.713	UPSTREAM CG10527 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
3L	8920923	3L_8920923_DEL [dm3] 3L_8927823_DEL [dm6]	TATCT	T	2.890e^-4	0.713	INTRON Tsp66E
X	4124047	X_4124047_DEL [dm3] X_4230014_DEL [dm6]	GGGACTGGATGGCAAGTTTT...	ATTGGACTGGATGGCAAGTT...	2.894e^-4	0.713	INTERGENIC
2L	9610340	2L_9610340_SNP [dm3] 2L_9610340_SNP [dm6]	T	C	2.896e^-4	0.713	INTRON gcm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad
X	10075826	X_10075826_SNP [dm3] X_10181793_SNP [dm6]	T	A	2.905e^-4	0.713	INTRON CG43902 & 1 other
3R	13784701	3R_13784701_SNP [dm3] 3R_17958979_SNP [dm6]	C	T	2.909e^-4	0.713	INTRON cpo
3L	14107052	3L_14107052_SNP [dm3] 3L_14113952_SNP [dm6]	A	G	2.910e^-4	0.713	INTRON Sox21b
3L	22880857	3L_22880857_SNP [dm3] 3L_22887757_SNP [dm6]	C	G	2.923e^-4	0.713	INTRON slif
2R	7565461	2R_7565461_SNP [dm3] 2R_11677956_SNP [dm6]	C	G	2.927e^-4	0.713	UTR_3_PRIME Tret1-2 INTRON Roc2	TF binding site mE1_TFBS_cad
2R	18946919	2R_18946919_SNP [dm3] 2R_23059396_SNP [dm6]	A	T	2.928e^-4	0.713	NON_SYNONYMOUS_CODING CG44252 DOWNSTREAM CG44253
X	1777044	X_1777044_SNP [dm3] X_1883011_SNP [dm6]	G	A	2.929e^-4	0.713	SYNONYMOUS_CODING trr	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26107914	3R_26107914_SNP [dm3] 3R_30282192_SNP [dm6]	A	T	2.932e^-4	0.713	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	4821177	3R_4821177_SNP [dm3] 3R_8995455_SNP [dm6]	T	G	2.936e^-4	0.713	NON_SYNONYMOUS_CODING CG31100 DOWNSTREAM CG11975
3R	11863394	3R_11863394_INS [dm3] 3R_16037672_INS [dm6]	T	TGT	2.941e^-4	0.713	INTRON pnr
3L	13885862	3L_13885862_SNP [dm3] 3L_13892762_SNP [dm6]	C	T	2.944e^-4	0.713	INTRON dysc
X	3032590	X_3032590_INS [dm3] X_3138557_INS [dm6]	T	TAGCTGCGAAATCTAT...	2.944e^-4	0.713	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	9554069	3R_9554069_SNP [dm3] 3R_13728347_SNP [dm6]	G	C	2.947e^-4	0.713	INTRON CG34383
3L	6981819	3L_6981819_SNP [dm3] 3L_6988719_SNP [dm6]	C	T	2.947e^-4	0.713	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	12954072	2L_12954072_DEL [dm3] 2L_12954072_DEL [dm6]	GAAGTTAGTTCTAAACATTC...	T	2.950e^-4	0.713	INTERGENIC
X	10354709	X_10354709_INS [dm3] X_10460676_INS [dm6]	C	CT	2.952e^-4	0.713	UPSTREAM Neb-cGP INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	14421782	2R_14421782_SNP [dm3] 2R_18534277_SNP [dm6]	G	A	2.954e^-4	0.713	SYNONYMOUS_CODING CG10924	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	14124351	3L_14124351_SNP [dm3] 3L_14131251_SNP [dm6]	T	A	2.964e^-4	0.713	START_GAINED Sox21b UTR_5_PRIME Sox21b	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	22769495	3R_22769495_SNP [dm3] 3R_26943773_SNP [dm6]	A	T	2.965e^-4	0.713	INTRON sda
2L	11958070	2L_11958070_SNP [dm3] 2L_11958070_SNP [dm6]	C	G	2.966e^-4	0.713	EXON CR43314
2L	18589939	2L_18589939_SNP [dm3] 2L_18589939_SNP [dm6]	A	G	2.968e^-4	0.713	UPSTREAM CG15160 INTRON Pde11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	20587472	3R_20587472_SNP [dm3] 3R_24761750_SNP [dm6]	G	A	2.970e^-4	0.713	SYNONYMOUS_CODING AstA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13036568	3R_13036568_SNP [dm3] 3R_17210846_SNP [dm6]	C	A	2.971e^-4	0.713	INTERGENIC
2L	18576631	2L_18576631_SNP [dm3] 2L_18576631_SNP [dm6]	A	G	2.977e^-4	0.713	INTRON Pde11
2R	15155807	2R_15155807_SNP [dm3] 2R_19268302_SNP [dm6]	C	T	2.982e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9354231	2R_9354231_INS [dm3] 2R_13466726_INS [dm6]	G	GCATAACCATCACG...	2.982e^-4	0.713	INTRON arr
3L	10133272	3L_10133272_SNP [dm3] 3L_10140172_SNP [dm6]	C	G	2.985e^-4	0.713	DOWNSTREAM dpr6 INTERGENIC
2R	7563242	2R_7563242_SNP [dm3] 2R_11675737_SNP [dm6]	C	T	2.993e^-4	0.713	UPSTREAM Tret1-2 DOWNSTREAM Tret1-1 INTRON Roc2
3L	1214592	3L_1214592_INS [dm3] 3L_1214592_INS [dm6]	T	TATATTAGAT	3.011e^-4	0.713	INTRON mwh
2L	15207689	2L_15207689_SNP [dm3] 2L_15207689_SNP [dm6]	C	T	3.020e^-4	0.713	UPSTREAM CR44196 INTERGENIC
3L	7573282	3L_7573282_SNP [dm3] 3L_7580182_SNP [dm6]	T	C	3.022e^-4	0.713	INTERGENIC
2L	18576637	2L_18576637_SNP [dm3] 2L_18576637_SNP [dm6]	A	G	3.025e^-4	0.713	INTRON Pde11
3R	26353227	3R_26353227_SNP [dm3] 3R_30527505_SNP [dm6]	C	T	3.029e^-4	0.713	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
X	4123081	X_4123081_DEL [dm3] X_4229048_DEL [dm6]	ACCTATGAAACAAATTTAAA...	A	3.032e^-4	0.713	INTERGENIC
3L	17962657	3L_17962657_INS [dm3] 3L_17969557_INS [dm6]	G	GG	3.034e^-4	0.713	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	19897009	X_19897009_DEL [dm3] X_20002976_DEL [dm6]	GTGG	G	3.035e^-4	0.713	UPSTREAM CG17003 INTERGENIC
X	12834085	X_12834085_SNP [dm3] X_12940052_SNP [dm6]	T	A	3.036e^-4	0.713	INTRON fne	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	4454821	2L_4454821_SNP [dm3] 2L_4454821_SNP [dm6]	A	C	3.036e^-4	0.713	SYNONYMOUS_CODING CG15434 UPSTREAM CG15440 DOWNSTREAM Gs1l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
3L	12689417	3L_12689417_SNP [dm3] 3L_12696317_SNP [dm6]	C	T	3.036e^-4	0.713	INTRON mirr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16947869	2R_16947869_SNP [dm3] 2R_21060364_SNP [dm6]	C	T	3.040e^-4	0.713	SYNONYMOUS_CODING CG15653 UPSTREAM mRpL54 DOWNSTREAM cpa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	18614344	2L_18614344_SNP [dm3] 2L_18614344_SNP [dm6]	A	G	3.040e^-4	0.713	UTR_3_PRIME CG15161
2R	7141075	2R_7141075_SNP [dm3] 2R_11253570_SNP [dm6]	G	A	3.048e^-4	0.713	UPSTREAM Cpr47Ea INTERGENIC
2R	8992366	2R_8992366_DEL [dm3] 2R_13104861_DEL [dm6]	TGGGTATAATT...	T	3.049e^-4	0.713	UTR_3_PRIME CG44341
3L	24500141	3L_24500141_SNP [dm3] 3L_24507041_SNP [dm6]	G	T	3.053e^-4	0.713	INTERGENIC
2R	17311385	2R_17311385_SNP [dm3] 2R_21423880_SNP [dm6]	G	A	3.055e^-4	0.713	INTRON Sdc
3L	14327289	3L_14327289_SNP [dm3] 3L_14334189_SNP [dm6]	G	A	3.058e^-4	0.713	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14720245	2R_14720245_INS [dm3] 2R_18832740_INS [dm6]	A	ATTGATATGCCTACATTGAT...	3.058e^-4	0.713	DOWNSTREAM CG15098 INTRON CG15082	TF binding site mE1_TFBS_chinmo
2R	18984685	2R_18984685_SNP [dm3] 2R_23097162_SNP [dm6]	G	A	3.060e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	13354585	3L_13354585_SNP [dm3] 3L_13361485_SNP [dm6]	T	C	3.063e^-4	0.713	INTERGENIC
3L	13087446	3L_13087446_SNP [dm3] 3L_13094346_SNP [dm6]	A	T	3.065e^-4	0.713	INTERGENIC
2R	17195764	2R_17195764_SNP [dm3] 2R_21308259_SNP [dm6]	T	C	3.072e^-4	0.713	INTRON CG42672	TF binding site mE1_TFBS_cad
X	16553128	X_16553128_SNP [dm3] X_16659095_SNP [dm6]	G	A	3.075e^-4	0.713	SYNONYMOUS_CODING r	TF binding site mE1_TFBS_chinmo
2L	14661105	2L_14661105_SNP [dm3] 2L_14661105_SNP [dm6]	A	G	3.079e^-4	0.713	INTRON osp
2R	10995364	2R_10995364_SNP [dm3] 2R_15107859_SNP [dm6]	G	C	3.082e^-4	0.713	INTERGENIC
3R	14808518	3R_14808518_SNP [dm3] 3R_18982796_SNP [dm6]	T	A	3.082e^-4	0.713	DOWNSTREAM snRNP-U1-C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	12480724	3L_12480724_SNP [dm3] 3L_12487624_SNP [dm6]	C	A	3.088e^-4	0.713	INTRON CG10660	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7823469	3L_7823469_SNP [dm3] 3L_7830369_SNP [dm6]	T	G	3.093e^-4	0.713	INTRON Pdp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9622514	2L_9622514_SNP [dm3] 2L_9622514_SNP [dm6]	G	T	3.093e^-4	0.713	UTR_3_PRIME GlcAT-S
3R	22769056	3R_22769056_SNP [dm3] 3R_26943334_SNP [dm6]	G	A	3.113e^-4	0.716	INTRON sda	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12267801	2R_12267801_SNP [dm3] 2R_16380296_SNP [dm6]	C	T	3.115e^-4	0.716	UPSTREAM CG43187 & 1 other DOWNSTREAM CR45316 INTERGENIC
3L	23834971	3L_23834971_SNP [dm3] 3L_23841871_SNP [dm6]	T	C	3.125e^-4	0.717	INTRON CG40470
3R	21333810	3R_21333810_SNP [dm3] 3R_25508088_SNP [dm6]	T	C	3.130e^-4	0.718	SYNONYMOUS_CODING CG5111	TF binding site mE1_TFBS_inv
2R	18934827	2R_18934827_SNP [dm3] 2R_23047304_SNP [dm6]	C	T	3.146e^-4	0.718	SYNONYMOUS_CODING twi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	17641407	2R_17641407_SNP [dm3] 2R_21753902_SNP [dm6]	C	A	3.147e^-4	0.718	INTERGENIC
3R	13437996	3R_13437996_SNP [dm3] 3R_17612274_SNP [dm6]	C	G	3.151e^-4	0.718	UPSTREAM Edg91 & 1 other INTERGENIC
3R	7644539	3R_7644539_SNP [dm3] 3R_11818817_SNP [dm6]	T	C	3.152e^-4	0.718	SYNONYMOUS_CODING glo UPSTREAM CoVa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_sens
3R	16493510	3R_16493510_SNP [dm3] 3R_20667788_SNP [dm6]	C	T	3.153e^-4	0.718	INTERGENIC
3R	8867421	3R_8867421_INS [dm3] 3R_13041699_INS [dm6]	T	TTGT	3.161e^-4	0.718	UTR_5_PRIME snk UPSTREAM CG11670
3L	7822558	3L_7822558_SNP [dm3] 3L_7829458_SNP [dm6]	G	C	3.167e^-4	0.718	INTRON Pdp1
2L	841272	2L_841272_SNP [dm3] 2L_841272_SNP [dm6]	G	T	3.176e^-4	0.718	INTRON drongo
X	11609810	X_11609810_SNP [dm3] X_11715777_SNP [dm6]	G	A	3.177e^-4	0.718	UPSTREAM Amun & 1 other DOWNSTREAM CR45618 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	19785843	3R_19785843_SNP [dm3] 3R_23960121_SNP [dm6]	C	T	3.182e^-4	0.718	UTR_3_PRIME AP-1sigma INTRON AP-1sigma
2L	18585510	2L_18585510_SNP [dm3] 2L_18585510_SNP [dm6]	A	C	3.182e^-4	0.718	INTRON Pde11
X	22149782	X_22149782_DEL [dm3] X_22747946_DEL [dm6]	TTACCCCCGGCT...	T	3.184e^-4	0.718	INTRON CR44997
2R	8898205	2R_8898205_SNP [dm3] 2R_13010700_SNP [dm6]	C	A	3.186e^-4	0.718	INTERGENIC
3R	9843353	3R_9843353_SNP [dm3] 3R_14017631_SNP [dm6]	G	A	3.192e^-4	0.718	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	25341543	3R_25341543_SNP [dm3] 3R_29515821_SNP [dm6]	C	A	3.193e^-4	0.718	UTR_5_PRIME CG2014 INTRON CG2014	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3R	7653460	3R_7653460_SNP [dm3] 3R_11827738_SNP [dm6]	G	A	3.196e^-4	0.718	INTRON CG6959
3L	9505531	3L_9505531_SNP [dm3] 3L_9512431_SNP [dm6]	A	T	3.200e^-4	0.718	UPSTREAM RpS9 DOWNSTREAM CG33702 INTRON CG33703	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2L	4001709	2L_4001709_SNP [dm3] 2L_4001709_SNP [dm6]	T	A	3.212e^-4	0.718	DOWNSTREAM CG43797 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	9107630	X_9107630_SNP [dm3] X_9213597_SNP [dm6]	A	C	3.213e^-4	0.718	INTERGENIC
X	9852819	X_9852819_SNP [dm3] X_9958786_SNP [dm6]	C	T	3.217e^-4	0.718	INTERGENIC
3R	13278712	3R_13278712_SNP [dm3] 3R_17452990_SNP [dm6]	T	G	3.217e^-4	0.718	INTERGENIC
2L	936040	2L_936040_SNP [dm3] 2L_936040_SNP [dm6]	G	A	3.218e^-4	0.718	INTRON CG4341	TF binding site mE1_TFBS_Trl
2R	6830294	2R_6830294_SNP [dm3] 2R_10942789_SNP [dm6]	A	T	3.221e^-4	0.718	INTERGENIC
3R	5697627	3R_5697627_SNP [dm3] 3R_9871905_SNP [dm6]	A	C	3.233e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	13620859	2L_13620859_SNP [dm3] 2L_13620859_SNP [dm6]	A	T	3.240e^-4	0.718	INTRON kuz
X	11609194	X_11609194_SNP [dm3] X_11715161_SNP [dm6]	T	C	3.246e^-4	0.718	UPSTREAM Amun DOWNSTREAM CR45618 INTRON Amun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
X	5817626	X_5817626_SNP [dm3] X_5923593_SNP [dm6]	C	T	3.248e^-4	0.718	INTRON CG3726
3L	13376315	3L_13376315_SNP [dm3] 3L_13383215_SNP [dm6]	T	C	3.248e^-4	0.718	SYNONYMOUS_CODING ImpL1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1819990	2L_1819990_INS [dm3] 2L_1819990_INS [dm6]	A	ATTTTCCTGGCGAA...	3.250e^-4	0.718	INTERGENIC
2R	18946836	2R_18946836_SNP [dm3] 2R_23059313_SNP [dm6]	A	G	3.263e^-4	0.718	DOWNSTREAM CG44253 INTRON CG44252
3R	13124271	3R_13124271_SNP [dm3] 3R_17298549_SNP [dm6]	G	T	3.264e^-4	0.718	INTERGENIC
2L	10681786	2L_10681786_INS [dm3] 2L_10681786_INS [dm6]	A	AGTA	3.266e^-4	0.718	UPSTREAM CG17107 DOWNSTREAM CG17105 INTERGENIC
2L	6986454	2L_6986454_SNP [dm3] 2L_6986454_SNP [dm6]	A	C	3.272e^-4	0.718	INTRON uif EXON CR44326
2L	8357987	2L_8357987_SNP [dm3] 2L_8357987_SNP [dm6]	G	T	3.277e^-4	0.718	SYNONYMOUS_CODING CG7627
2L	947252	2L_947252_SNP [dm3] 2L_947252_SNP [dm6]	A	C	3.290e^-4	0.718	INTRON CG4341
3L	22895364	3L_22895364_SNP [dm3] 3L_22902264_SNP [dm6]	C	T	3.292e^-4	0.718	SYNONYMOUS_CODING BoYb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13091736	3R_13091736_SNP [dm3] 3R_17266014_SNP [dm6]	A	C	3.292e^-4	0.718	UPSTREAM beat-IIb DOWNSTREAM CG44257 INTERGENIC
2L	564163	2L_564163_SNP [dm3] 2L_564163_SNP [dm6]	A	G	3.293e^-4	0.718	UTR_5_PRIME CG2794 UPSTREAM CG11835	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2R	19004892	2R_19004892_SNP [dm3] 2R_23117369_SNP [dm6]	T	C	3.293e^-4	0.718	INTERGENIC
2R	16967757	2R_16967757_SNP [dm3] 2R_21080252_SNP [dm6]	G	C	3.294e^-4	0.718	UPSTREAM Treh INTRON Treh
2L	10644238	2L_10644238_SNP [dm3] 2L_10644238_SNP [dm6]	A	G	3.296e^-4	0.718	DOWNSTREAM CG31872 INTRON CG18284
3R	5742631	3R_5742631_SNP [dm3] 3R_9916909_SNP [dm6]	G	C	3.299e^-4	0.718	INTRON Glut4EF	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8935922	3L_8935922_SNP [dm3] 3L_8942822_SNP [dm6]	T	C	3.300e^-4	0.718	UTR_3_PRIME orb2 INTRON CG43783	TF binding site mE1_TFBS_cad
3L	17012087	3L_17012087_SNP [dm3] 3L_17018987_SNP [dm6]	G	A	3.301e^-4	0.718	SYNONYMOUS_CODING CG7728	TF binding site mE1_TFBS_cad
X	5619874	X_5619874_SNP [dm3] X_5725841_SNP [dm6]	C	T	3.308e^-4	0.719	INTRON CG32758
3R	26418242	3R_26418242_SNP [dm3] 3R_30592520_SNP [dm6]	A	G	3.321e^-4	0.72	DOWNSTREAM CG2246 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5856365	X_5856365_SNP [dm3] X_5962332_SNP [dm6]	C	T	3.325e^-4	0.72	INTRON fs_1_M3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20234183	3L_20234183_SNP [dm3] 3L_20241083_SNP [dm6]	A	G	3.327e^-4	0.72	UTR_5_PRIME Clc UPSTREAM CG6951 & 1 other INTRON CG17233	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4199122	3L_4199122_SNP [dm3] 3L_4199122_SNP [dm6]	C	T	3.332e^-4	0.72	SYNONYMOUS_CODING CG43367
3R	12759102	3R_12759102_DEL [dm3] 3R_16933380_DEL [dm6]	TTT	T	3.339e^-4	0.72	UTR_5_PRIME Abd-B INTRON Abd-B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	8590565	2R_8590565_SNP [dm3] 2R_12703060_SNP [dm6]	T	C	3.348e^-4	0.72	INTERGENIC
2R	10622349	2R_10622349_SNP [dm3] 2R_14734844_SNP [dm6]	C	G	3.350e^-4	0.72	INTERGENIC
3R	7929479	3R_7929479_SNP [dm3] 3R_12103757_SNP [dm6]	A	G	3.350e^-4	0.72	INTRON dpr17
3L	11297057	3L_11297057_SNP [dm3] 3L_11303957_SNP [dm6]	A	T	3.353e^-4	0.72	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	584036	2L_584036_SNP [dm3] 2L_584036_SNP [dm6]	G	A	3.358e^-4	0.72	UTR_3_PRIME Gsc
2R	9440383	2R_9440383_SNP [dm3] 2R_13552878_SNP [dm6]	T	C	3.362e^-4	0.72	UPSTREAM CG33156 INTRON CG33156
3L	12307207	3L_12307207_SNP [dm3] 3L_12314107_SNP [dm6]	G	T	3.369e^-4	0.72	INTERGENIC	regulatory region REDfly_CRMs
3R	19784245	3R_19784245_SNP [dm3] 3R_23958523_SNP [dm6]	C	T	3.371e^-4	0.72	UPSTREAM AP-1sigma & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	14011147	2R_14011147_SNP [dm3] 2R_18123642_SNP [dm6]	A	G	3.374e^-4	0.72	INTRON stau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	23395672	3L_23395672_SNP [dm3] 3L_23402572_SNP [dm6]	G	T	3.375e^-4	0.72	INTERGENIC
2L	18731745	2L_18731745_SNP [dm3] 2L_18731745_SNP [dm6]	C	T	3.380e^-4	0.72	UTR_5_PRIME CG10348 UPSTREAM CG10348 & 1 other
2R	19052230	2R_19052230_SNP [dm3] 2R_23164707_SNP [dm6]	C	G	3.380e^-4	0.72	SYNONYMOUS_CODING CG34371
2L	10644174	2L_10644174_SNP [dm3] 2L_10644174_SNP [dm6]	G	A	3.384e^-4	0.72	DOWNSTREAM CG31872 INTRON CG18284
2L	12452368	2L_12452368_SNP [dm3] 2L_12452368_SNP [dm6]	T	C	3.387e^-4	0.72	NON_SYNONYMOUS_CODING CG5418 DOWNSTREAM Oatp33Eb	TF binding site mE1_TFBS_cad
3R	9840665	3R_9840665_SNP [dm3] 3R_14014943_SNP [dm6]	G	C	3.398e^-4	0.72	INTRON rdx
2L	10299532	2L_10299532_SNP [dm3] 2L_10299532_SNP [dm6]	A	T	3.399e^-4	0.72	DOWNSTREAM CG13138 INTRON CYLD	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	11273852	3R_11273852_SNP [dm3] 3R_15448130_SNP [dm6]	A	G	3.415e^-4	0.72	SYNONYMOUS_CODING AdamTS-A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19999359	3R_19999359_SNP [dm3] 3R_24173637_SNP [dm6]	A	T	3.418e^-4	0.72	INTRON CG13606
2R	15892374	2R_15892374_SNP [dm3] 2R_20004869_SNP [dm6]	G	A	3.422e^-4	0.72	SYNONYMOUS_CODING CG16898	TF binding site mE1_TFBS_HSA
2L	3926865	2L_3926865_SNP [dm3] 2L_3926865_SNP [dm6]	T	G	3.434e^-4	0.72	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	11228225	3L_11228225_SNP [dm3] 3L_11235125_SNP [dm6]	G	T	3.438e^-4	0.72	INTRON Ir68a
3R	9552344	3R_9552344_SNP [dm3] 3R_13726622_SNP [dm6]	A	T	3.440e^-4	0.72	INTRON CG34383
3R	8634682	3R_8634682_SNP [dm3] 3R_12808960_SNP [dm6]	C	T	3.446e^-4	0.72	INTERGENIC
3R	16646747	3R_16646747_SNP [dm3] 3R_20821025_SNP [dm6]	T	C	3.450e^-4	0.72	INTRON CG17271
3L	11208532	3L_11208532_SNP [dm3] 3L_11215432_SNP [dm6]	A	T	3.454e^-4	0.72	UPSTREAM CG42671 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	13206290	3R_13206290_SNP [dm3] 3R_17380568_SNP [dm6]	G	A	3.455e^-4	0.72	INTRON Brf & 1 other
2R	18988057	2R_18988057_SNP [dm3] 2R_23100534_SNP [dm6]	T	C	3.459e^-4	0.72	UPSTREAM RpL37b DOWNSTREAM CG42703 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	22031386	3L_22031386_SNP [dm3] 3L_22038286_SNP [dm6]	G	A	3.467e^-4	0.72	INTRON Oct-TyrR
3L	7193744	3L_7193744_SNP [dm3] 3L_7200644_SNP [dm6]	T	C	3.469e^-4	0.72	INTERGENIC
3L	1113891	3L_1113891_SNP [dm3] 3L_1113891_SNP [dm6]	C	T	3.477e^-4	0.72	INTERGENIC	TF binding site mE1_TFBS_cad
3L	12149460	3L_12149460_SNP [dm3] 3L_12156360_SNP [dm6]	T	C	3.491e^-4	0.72	UTR_3_PRIME Nrx-IV DOWNSTREAM CG9760
3L	24292597	3L_24292597_SNP [dm3] 3L_24299497_SNP [dm6]	C	A	3.491e^-4	0.72	DOWNSTREAM Snap25 INTERGENIC
2R	7130481	2R_7130481_SNP [dm3] 2R_11242976_SNP [dm6]	G	A	3.499e^-4	0.72	UPSTREAM Listericin INTERGENIC
3L	3489903	3L_3489903_SNP [dm3] 3L_3489903_SNP [dm6]	T	A	3.499e^-4	0.72	INTRON CG42324
3L	23233594	3L_23233594_SNP [dm3] 3L_23240494_SNP [dm6]	C	T	3.502e^-4	0.72	INTRON nAChRalpha4	TF binding site BDTNP1_TFBS_dl
2R	19003503	2R_19003503_SNP [dm3] 2R_23115980_SNP [dm6]	C	G	3.504e^-4	0.72	INTERGENIC
2R	19003509	2R_19003509_SNP [dm3] 2R_23115986_SNP [dm6]	T	A	3.504e^-4	0.72	INTERGENIC
3L	17261016	3L_17261016_SNP [dm3] 3L_17267916_SNP [dm6]	A	G	3.509e^-4	0.72	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	17013933	3L_17013933_SNP [dm3] 3L_17020833_SNP [dm6]	A	C	3.510e^-4	0.72	DOWNSTREAM CG7728 INTRON CG6652	TF binding site mE1_TFBS_cad
3R	9881680	3R_9881680_SNP [dm3] 3R_14055958_SNP [dm6]	C	T	3.510e^-4	0.72	UPSTREAM foxo INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10622205	2R_10622205_SNP [dm3] 2R_14734700_SNP [dm6]	G	A	3.517e^-4	0.72	INTERGENIC
3L	15703899	3L_15703899_SNP [dm3] 3L_15710799_SNP [dm6]	G	T	3.517e^-4	0.72	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	6152605	X_6152605_SNP [dm3] X_6258572_SNP [dm6]	T	A	3.527e^-4	0.72	DOWNSTREAM Spx INTRON schlank	TF binding site mE1_TFBS_sens
X	6152619	X_6152619_SNP [dm3] X_6258586_SNP [dm6]	A	C	3.527e^-4	0.72	DOWNSTREAM Spx INTRON schlank	TF binding site mE1_TFBS_sens
X	4249618	X_4249618_SNP [dm3] X_4355585_SNP [dm6]	G	A	3.527e^-4	0.72	INTRON norpA	TF binding site mE1_TFBS_HSA
3L	11236634	3L_11236634_SNP [dm3] 3L_11243534_SNP [dm6]	A	G	3.538e^-4	0.72	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	23237683	3L_23237683_SNP [dm3] 3L_23244583_SNP [dm6]	T	A	3.539e^-4	0.72	INTRON nAChRalpha4
2R	19003538	2R_19003538_SNP [dm3] 2R_23116015_SNP [dm6]	A	G	3.551e^-4	0.72	INTERGENIC
3L	8891777	3L_8891777_SNP [dm3] 3L_8898677_SNP [dm6]	C	T	3.555e^-4	0.72	INTRON TrpA1
3R	20466021	3R_20466021_DEL [dm3] 3R_24640299_DEL [dm6]	TAA	T	3.557e^-4	0.72	DOWNSTREAM puf INTRON puf	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sbb
3L	11547973	3L_11547973_SNP [dm3] 3L_11554873_SNP [dm6]	T	C	3.560e^-4	0.72	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	19621200	3R_19621200_SNP [dm3] 3R_23795478_SNP [dm6]	G	A	3.562e^-4	0.72	INTRON mbc
2R	18947756	2R_18947756_SNP [dm3] 2R_23060233_SNP [dm6]	A	G	3.566e^-4	0.72	SYNONYMOUS_CODING CG44252	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9872652	2L_9872652_SNP [dm3] 2L_9872652_SNP [dm6]	G	C	3.576e^-4	0.72	INTRON nAChRalpha6
2L	3159457	2L_3159457_SNP [dm3] 2L_3159457_SNP [dm6]	G	A	3.578e^-4	0.72	UPSTREAM gkt INTRON Mad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	3865092	2L_3865092_SNP [dm3] 2L_3865092_SNP [dm6]	A	G	3.585e^-4	0.72	SYNONYMOUS_CODING CG3964
2L	14661104	2L_14661104_SNP [dm3] 2L_14661104_SNP [dm6]	G	A	3.586e^-4	0.72	INTRON osp
3R	26755006	3R_26755006_SNP [dm3] 3R_30929284_SNP [dm6]	T	C	3.590e^-4	0.72	SYNONYMOUS_CODING Ptx1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14836587	3R_14836587_SNP [dm3] 3R_19010865_SNP [dm6]	T	A	3.602e^-4	0.72	INTRON gukh
3R	14836588	3R_14836588_SNP [dm3] 3R_19010866_SNP [dm6]	A	T	3.602e^-4	0.72	INTRON gukh
3R	12043924	3R_12043924_SNP [dm3] 3R_16218202_SNP [dm6]	G	A	3.603e^-4	0.72	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10393763	2L_10393763_SNP [dm3] 2L_10393763_SNP [dm6]	T	C	3.607e^-4	0.72	DOWNSTREAM Mdh1 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	14326991	3L_14326991_SNP [dm3] 3L_14333891_SNP [dm6]	C	T	3.607e^-4	0.72	INTRON fz	TF binding site BDTNP1_TFBS_twi
3L	7573349	3L_7573349_SNP [dm3] 3L_7580249_SNP [dm6]	C	G	3.609e^-4	0.72	INTERGENIC
2L	14255654	2L_14255654_SNP [dm3] 2L_14255654_SNP [dm6]	G	A	3.609e^-4	0.72	INTERGENIC
3R	16521724	3R_16521724_SNP [dm3] 3R_20696002_SNP [dm6]	C	T	3.611e^-4	0.72	INTRON Oamb
3L	14509050	3L_14509050_SNP [dm3] 3L_14515950_SNP [dm6]	G	A	3.616e^-4	0.72	INTRON bbg
X	4049846	X_4049846_SNP [dm3] X_4155813_SNP [dm6]	C	A	3.617e^-4	0.72	INTRON Fas2
2R	1674908	2R_1674908_DEL [dm3] 2R_5787403_DEL [dm6]	CT	A	3.618e^-4	0.72	INTERGENIC
2L	14661128	2L_14661128_SNP [dm3] 2L_14661128_SNP [dm6]	T	C	3.618e^-4	0.72	INTRON osp
2L	6952994	2L_6952994_SNP [dm3] 2L_6952994_SNP [dm6]	C	A	3.624e^-4	0.72	INTRON SA
3R	21029997	3R_21029997_SNP [dm3] 3R_25204275_SNP [dm6]	C	A	3.631e^-4	0.72	SYNONYMOUS_CODING Cad96Ca INTRON CG13654	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13766403	2R_13766403_SNP [dm3] 2R_17878898_SNP [dm6]	A	G	3.636e^-4	0.72	SYNONYMOUS_CODING CG30325 INTRON Elk
3L	8890968	3L_8890968_SNP [dm3] 3L_8897868_SNP [dm6]	G	A	3.639e^-4	0.72	SYNONYMOUS_CODING TrpA1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	24394664	3L_24394664_SNP [dm3] 3L_24401564_SNP [dm6]	A	G	3.644e^-4	0.72	UTR_3_PRIME nvd
2R	2607569	2R_2607569_DEL [dm3] 2R_6720064_DEL [dm6]	TATAAAATAAATC...	T	3.644e^-4	0.72	UPSTREAM Zip42C.2 INTERGENIC
2L	12832638	2L_12832638_SNP [dm3] 2L_12832638_SNP [dm6]	T	C	3.649e^-4	0.72	INTERGENIC
2R	19003251	2R_19003251_SNP [dm3] 2R_23115728_SNP [dm6]	C	T	3.667e^-4	0.72	INTERGENIC
3L	14155274	3L_14155274_SNP [dm3] 3L_14162174_SNP [dm6]	G	A	3.668e^-4	0.72	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	22589354	3L_22589354_SNP [dm3] 3L_22596254_SNP [dm6]	T	C	3.668e^-4	0.72	INTRON CG14459
2L	17542630	2L_17542630_SNP [dm3] 2L_17542630_SNP [dm6]	C	A	3.675e^-4	0.72	DOWNSTREAM CR43304 INTERGENIC
3L	9021373	3L_9021373_SNP [dm3] 3L_9028273_SNP [dm6]	G	A	3.676e^-4	0.72	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	11775489	3L_11775489_SNP [dm3] 3L_11782389_SNP [dm6]	A	G	3.685e^-4	0.72	SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	22772384	3R_22772384_SNP [dm3] 3R_26946662_SNP [dm6]	G	C	3.685e^-4	0.72	DOWNSTREAM tRNA:CR31071 & 1 other INTRON CG14252	TF binding site mE1_TFBS_sens
2R	20738452	2R_20738452_SNP [dm3] 2R_24850929_SNP [dm6]	T	C	3.685e^-4	0.72	DOWNSTREAM CG3650 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2R	18981454	2R_18981454_SNP [dm3] 2R_23093931_SNP [dm6]	G	T	3.694e^-4	0.72	SYNONYMOUS_CODING CG9876
2L	10300849	2L_10300849_SNP [dm3] 2L_10300849_SNP [dm6]	T	G	3.696e^-4	0.72	SYNONYMOUS_CODING CG13138	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3L	17009542	3L_17009542_SNP [dm3] 3L_17016442_SNP [dm6]	A	T	3.702e^-4	0.72	UPSTREAM CG7728 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	11176370	2L_11176370_SNP [dm3] 2L_11176370_SNP [dm6]	T	C	3.716e^-4	0.72	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl
3L	11349716	3L_11349716_SNP [dm3] 3L_11356616_SNP [dm6]	C	T	3.725e^-4	0.72	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7135263	2R_7135263_SNP [dm3] 2R_11247758_SNP [dm6]	G	T	3.726e^-4	0.72	UPSTREAM CG34227 INTERGENIC
2R	7164917	2R_7164917_SNP [dm3] 2R_11277412_SNP [dm6]	A	G	3.730e^-4	0.72	DOWNSTREAM Cpr47Eg INTERGENIC
2L	16576869	2L_16576869_SNP [dm3] 2L_16576869_SNP [dm6]	A	T	3.736e^-4	0.72	INTRON CG42389
2R	7136866	2R_7136866_SNP [dm3] 2R_11249361_SNP [dm6]	A	T	3.740e^-4	0.72	UPSTREAM CG43112 DOWNSTREAM CG34227 INTERGENIC
3L	16731299	3L_16731299_SNP [dm3] 3L_16738199_SNP [dm6]	C	T	3.743e^-4	0.72	INTRON CG9701	TF binding site mE1_TFBS_cad
3L	14508690	3L_14508690_SNP [dm3] 3L_14515590_SNP [dm6]	G	T	3.744e^-4	0.72	INTRON bbg
3L	14504570	3L_14504570_SNP [dm3] 3L_14511470_SNP [dm6]	C	T	3.744e^-4	0.72	SYNONYMOUS_CODING bbg	TF binding site mE1_TFBS_sens
2L	21722819	2L_21722819_SNP [dm3] 2L_21722819_SNP [dm6]	A	G	3.750e^-4	0.72	INTRON CG31619
2L	21900248	2L_21900248_SNP [dm3] 2L_21900248_SNP [dm6]	T	C	3.751e^-4	0.72	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	521926	3L_521926_SNP [dm3] 3L_521926_SNP [dm6]	C	T	3.756e^-4	0.72	INTRON klar
3R	10859785	3R_10859785_SNP [dm3] 3R_15034063_SNP [dm6]	G	A	3.757e^-4	0.72	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17144938	3R_17144938_SNP [dm3] 3R_21319216_SNP [dm6]	C	T	3.762e^-4	0.72	UTR_3_PRIME CG16791	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	6455531	X_6455531_SNP [dm3] X_6561498_SNP [dm6]	G	A	3.765e^-4	0.72	SYNONYMOUS_CODING CG34417	TF binding site mE1_TFBS_sens
3R	21465784	3R_21465784_SNP [dm3] 3R_25640062_SNP [dm6]	T	C	3.769e^-4	0.72	INTRON jigr1
3L	14155283	3L_14155283_DEL [dm3] 3L_14162183_DEL [dm6]	TGT	T	3.771e^-4	0.72	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12550673	2L_12550673_SNP [dm3] 2L_12550673_SNP [dm6]	C	T	3.782e^-4	0.72	INTERGENIC
2R	16967206	2R_16967206_SNP [dm3] 2R_21079701_SNP [dm6]	C	A	3.785e^-4	0.72	UPSTREAM Treh INTRON Treh
3L	16751232	3L_16751232_SNP [dm3] 3L_16758132_SNP [dm6]	A	T	3.791e^-4	0.72	INTERGENIC
3L	3119769	3L_3119769_SNP [dm3] 3L_3119769_SNP [dm6]	A	G	3.802e^-4	0.72	INTRON prominin-like
3R	25901375	3R_25901375_SNP [dm3] 3R_30075653_SNP [dm6]	C	T	3.805e^-4	0.72	INTRON sima
2R	10564111	2R_10564111_SNP [dm3] 2R_14676606_SNP [dm6]	G	T	3.806e^-4	0.72	NON_SYNONYMOUS_CODING CG30480 UTR_5_PRIME CG30479 INTRON mspo	TF binding site mE1_TFBS_sens
2R	15218521	2R_15218521_SNP [dm3] 2R_19331016_SNP [dm6]	T	C	3.806e^-4	0.72	SYNONYMOUS_CODING CG34045 INTRON Rgk1
3L	12440818	3L_12440818_SNP [dm3] 3L_12447718_SNP [dm6]	T	G	3.820e^-4	0.72	INTERGENIC
2L	14661153	2L_14661153_SNP [dm3] 2L_14661153_SNP [dm6]	A	T	3.823e^-4	0.72	INTRON osp
2R	13603437	2R_13603437_SNP [dm3] 2R_17715932_SNP [dm6]	G	A	3.823e^-4	0.72	UTR_5_PRIME CG6424	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
3L	11545345	3L_11545345_INS [dm3] 3L_11552245_INS [dm6]	T	TT	3.826e^-4	0.72	DOWNSTREAM mir-4968 INTRON Mob2	TF binding site BDTNP1_TFBS_dl
3L	10861558	3L_10861558_SNP [dm3] 3L_10868458_SNP [dm6]	G	A	3.827e^-4	0.72	INTRON tna
3L	16733887	3L_16733887_SNP [dm3] 3L_16740787_SNP [dm6]	G	A	3.832e^-4	0.72	INTERGENIC
3L	14135339	3L_14135339_SNP [dm3] 3L_14142239_SNP [dm6]	A	T	3.833e^-4	0.72	INTERGENIC	regulatory region REDfly_CRMs
X	8911288	X_8911288_SNP [dm3] X_9017255_SNP [dm6]	G	A	3.845e^-4	0.72	INTRON CR43836 & 1 other
2L	18230571	2L_18230571_SNP [dm3] 2L_18230571_SNP [dm6]	A	G	3.850e^-4	0.72	INTRON CG42750	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3R	19566701	3R_19566701_SNP [dm3] 3R_23740979_SNP [dm6]	G	T	3.855e^-4	0.72	INTRON Hmgcr
2R	7136918	2R_7136918_SNP [dm3] 2R_11249413_SNP [dm6]	G	C	3.858e^-4	0.72	UPSTREAM CG43112 & 1 other DOWNSTREAM CG34227 INTERGENIC
2L	12286722	2L_12286722_SNP [dm3] 2L_12286722_SNP [dm6]	T	A	3.869e^-4	0.72	UPSTREAM aret INTRON aret
X	13330172	X_13330172_INS [dm3] X_13436139_INS [dm6]	T	TGTT	3.872e^-4	0.72	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	18955670	2R_18955670_SNP [dm3] 2R_23068147_SNP [dm6]	T	A	3.872e^-4	0.72	DOWNSTREAM PPO3 INTRON l_2_k09913	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	23835857	3L_23835857_SNP [dm3] 3L_23842757_SNP [dm6]	C	T	3.874e^-4	0.72	INTRON CG40470
X	8911381	X_8911381_SNP [dm3] X_9017348_SNP [dm6]	A	C	3.878e^-4	0.72	INTRON CR43836 & 1 other
3L	15757436	3L_15757436_DEL [dm3] 3L_15764336_DEL [dm6]	CAATTCGAAATGAGTGAGAG...	T	3.883e^-4	0.72	INTERGENIC
3L	7215861	3L_7215861_SNP [dm3] 3L_7222761_SNP [dm6]	A	T	3.883e^-4	0.72	EXON CR45410
3R	10672747	3R_10672747_INS [dm3] 3R_14847025_INS [dm6]	A	AA	3.884e^-4	0.72	DOWNSTREAM CG3610 INTRON btsz
2L	8786460	2L_8786460_SNP [dm3] 2L_8786460_SNP [dm6]	T	A	3.885e^-4	0.72	INTERGENIC

By genomic position
Variant impact
Gene name

StartleRes phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results