DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.609e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.07962
In_2R_NS	0.05137
In_3R_K	0.05568

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	8.9143	0.0116
In_3R_K	5.9189	0.0518

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2705 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	1392230	3L_1392230_SNP [dm3] 3L_1392230_SNP [dm6]	A	T	9.448e^-8	0.111	INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1893928	3L_1893928_SNP [dm3] 3L_1893928_SNP [dm6]	T	C	1.183e^-7	0.111	SYNONYMOUS_CODING CG1887
3L	18395930	3L_18395930_SNP [dm3] 3L_18402830_SNP [dm6]	T	C	8.236e^-7	0.389	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4876217	3L_4876217_SNP [dm3] 3L_4876217_SNP [dm6]	A	T	8.463e^-7	0.389	INTRON CG17150
2L	20379285	2L_20379285_SNP [dm3] 2L_20379285_SNP [dm6]	G	T	1.187e^-6	0.389	SYNONYMOUS_CODING CG16798
2R	4815100	2R_4815100_SNP [dm3] 2R_8927595_SNP [dm6]	G	A	1.439e^-6	0.389	NON_SYNONYMOUS_CODING CG8235 UPSTREAM PAN2 DOWNSTREAM CG8237	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4821273	2R_4821273_SNP [dm3] 2R_8933768_SNP [dm6]	G	C	1.508e^-6	0.389	DOWNSTREAM PAN2 & 1 other INTRON CG13749
3R	19030449	3R_19030449_INS [dm3] 3R_23204727_INS [dm6]	G	GTT	1.691e^-6	0.389	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
2R	4831634	2R_4831634_SNP [dm3] 2R_8944129_SNP [dm6]	T	C	2.255e^-6	0.389	DOWNSTREAM CG8230 EXON CR44274
3L	1392353	3L_1392353_SNP [dm3] 3L_1392353_SNP [dm6]	A	G	2.494e^-6	0.389	INTRON Ptp61F	TF binding site mE1_TFBS_cad
2L	13142019	2L_13142019_SNP [dm3] 2L_13142019_SNP [dm6]	C	T	2.669e^-6	0.389	DOWNSTREAM CG9928 INTERGENIC
2R	4807210	2R_4807210_SNP [dm3] 2R_8919705_SNP [dm6]	T	A	2.806e^-6	0.389	NON_SYNONYMOUS_CODING CG8248 UPSTREAM CG34219 DOWNSTREAM Spt
2L	20351369	2L_20351369_SNP [dm3] 2L_20351369_SNP [dm6]	G	A	2.826e^-6	0.389	INTRON RtGEF
3L	1392225	3L_1392225_SNP [dm3] 3L_1392225_SNP [dm6]	A	T	2.902e^-6	0.389	INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	20350998	2L_20350998_SNP [dm3] 2L_20350998_SNP [dm6]	C	A	3.941e^-6	0.43	UPSTREAM La INTRON RtGEF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D
2R	4831635	2R_4831635_SNP [dm3] 2R_8944130_SNP [dm6]	C	T	4.108e^-6	0.43	DOWNSTREAM CG8230 EXON CR44274
2L	3940349	2L_3940349_SNP [dm3] 2L_3940349_SNP [dm6]	C	T	4.438e^-6	0.43	INTRON fred
2L	975816	2L_975816_SNP [dm3] 2L_975816_SNP [dm6]	T	C	4.455e^-6	0.43	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3R	20901280	3R_20901280_SNP [dm3] 3R_25075558_SNP [dm6]	G	T	5.081e^-6	0.43	UPSTREAM CG9996 INTRON CG11920	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4873121	3L_4873121_SNP [dm3] 3L_4873121_SNP [dm6]	G	A	5.154e^-6	0.43	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10381181	2L_10381181_SNP [dm3] 2L_10381181_SNP [dm6]	C	T	5.175e^-6	0.43	SYNONYMOUS_CODING gny
3L	17275578	3L_17275578_SNP [dm3] 3L_17282478_SNP [dm6]	T	C	5.471e^-6	0.43	INTERGENIC
3R	27235971	3R_27235971_SNP [dm3] 3R_31410249_SNP [dm6]	A	T	5.485e^-6	0.43	INTRON Gprk2
3R	22832672	3R_22832672_SNP [dm3] 3R_27006950_SNP [dm6]	G	T	5.639e^-6	0.43	INTRON RYa-R & 1 other	TF binding site mE1_TFBS_cad
2L	20259695	2L_20259695_SNP [dm3] 2L_20259695_SNP [dm6]	G	T	5.916e^-6	0.43	INTERGENIC
3R	18001862	3R_18001862_SNP [dm3] 3R_22176140_SNP [dm6]	C	T	6.059e^-6	0.43	INTRON SKIP
3R	22832673	3R_22832673_SNP [dm3] 3R_27006951_SNP [dm6]	G	A	6.381e^-6	0.43	INTRON RYa-R & 1 other	TF binding site mE1_TFBS_cad
3R	22832691	3R_22832691_SNP [dm3] 3R_27006969_SNP [dm6]	G	T	6.421e^-6	0.43	INTRON RYa-R & 1 other	TF binding site mE1_TFBS_cad
2R	16934371	2R_16934371_SNP [dm3] 2R_21046866_SNP [dm6]	A	G	7.074e^-6	0.432	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	6607825	2L_6607825_SNP [dm3] 2L_6607825_SNP [dm6]	T	C	7.078e^-6	0.432	INTERGENIC
3L	13882409	3L_13882409_SNP [dm3] 3L_13889309_SNP [dm6]	T	C	7.487e^-6	0.432	INTRON dysc
2L	10381472	2L_10381472_SNP [dm3] 2L_10381472_SNP [dm6]	A	G	7.735e^-6	0.432	SYNONYMOUS_CODING gny UPSTREAM CG5096
3L	12846277	3L_12846277_SNP [dm3] 3L_12853177_SNP [dm6]	T	C	7.926e^-6	0.432	UPSTREAM Ent3 DOWNSTREAM Wbp2 INTERGENIC
2L	13756725	2L_13756725_SNP [dm3] 2L_13756725_SNP [dm6]	T	C	7.932e^-6	0.432	DOWNSTREAM CR44846 INTRON TM9SF4
3R	27235972	3R_27235972_SNP [dm3] 3R_31410250_SNP [dm6]	T	G	8.069e^-6	0.432	INTRON Gprk2
2L	20141865	2L_20141865_INS [dm3] 2L_20141865_INS [dm6]	A	ACTTTCTAAGCCAGAAA...	8.441e^-6	0.44	INTERGENIC
2R	5020785	2R_5020785_SNP [dm3] 2R_9133280_SNP [dm6]	C	T	8.938e^-6	0.44	NON_SYNONYMOUS_CODING Hydr1 UPSTREAM Hydr1 INTRON Hydr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_sens
2R	16934381	2R_16934381_SNP [dm3] 2R_21046876_SNP [dm6]	C	G	9.558e^-6	0.44	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	4747355	2R_4747355_SNP [dm3] 2R_8859850_SNP [dm6]	T	A	9.819e^-6	0.44	UPSTREAM RyR INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_sbb
2L	20313551	2L_20313551_SNP [dm3] 2L_20313551_SNP [dm6]	G	T	1.004e^-5	0.44	INTRON spir
3L	10570833	3L_10570833_SNP [dm3] 3L_10577733_SNP [dm6]	G	T	1.005e^-5	0.44	INTRON A2bp1
3L	2711053	3L_2711053_SNP [dm3] 3L_2711053_SNP [dm6]	T	G	1.037e^-5	0.44	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27235983	3R_27235983_SNP [dm3] 3R_31410261_SNP [dm6]	C	T	1.044e^-5	0.44	INTRON Gprk2
X	5397179	X_5397179_SNP [dm3] X_5503146_SNP [dm6]	T	A	1.048e^-5	0.44	DOWNSTREAM CG4151 INTERGENIC
X	16362211	X_16362211_SNP [dm3] X_16468178_SNP [dm6]	A	C	1.150e^-5	0.44	INTRON para	TF binding site mE1_TFBS_HSA
2R	4772596	2R_4772596_DEL [dm3] 2R_8885091_DEL [dm6]	TGGCCAAT	T	1.215e^-5	0.44	INTRON RyR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20603099	X_20603099_SNP [dm3] X_20732072_SNP [dm6]	A	C	1.217e^-5	0.44	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3L	4873268	3L_4873268_SNP [dm3] 3L_4873268_SNP [dm6]	T	C	1.237e^-5	0.44	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25459134	3R_25459134_SNP [dm3] 3R_29633412_SNP [dm6]	C	T	1.261e^-5	0.44	INTRON Dop1R2
3L	19220699	3L_19220699_SNP [dm3] 3L_19227599_SNP [dm6]	C	T	1.334e^-5	0.44	INTRON fz2
3R	9685444	3R_9685444_SNP [dm3] 3R_13859722_SNP [dm6]	G	A	1.371e^-5	0.44	INTERGENIC
3L	12846274	3L_12846274_SNP [dm3] 3L_12853174_SNP [dm6]	C	A	1.394e^-5	0.44	UPSTREAM Ent3 DOWNSTREAM Wbp2 INTERGENIC
3L	13990957	3L_13990957_SNP [dm3] 3L_13997857_SNP [dm6]	A	C	1.397e^-5	0.44	UTR_3_PRIME CG17361 DOWNSTREAM CG17359
X	5332184	X_5332184_SNP [dm3] X_5438151_SNP [dm6]	A	C	1.421e^-5	0.44	INTERGENIC
2R	11140627	2R_11140627_SNP [dm3] 2R_15253122_SNP [dm6]	G	T	1.480e^-5	0.44	INTRON scb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	8625700	X_8625700_SNP [dm3] X_8731667_SNP [dm6]	C	A	1.562e^-5	0.44	INTERGENIC
X	5397169	X_5397169_SNP [dm3] X_5503136_SNP [dm6]	C	T	1.568e^-5	0.44	DOWNSTREAM CG4151 INTERGENIC
3R	25826206	3R_25826206_SNP [dm3] 3R_30000484_SNP [dm6]	C	G	1.582e^-5	0.44	UPSTREAM Tace DOWNSTREAM CG11504 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	20225667	2L_20225667_SNP [dm3] 2L_20225667_SNP [dm6]	G	A	1.583e^-5	0.44	INTERGENIC
X	12290967	X_12290967_SNP [dm3] X_12396934_SNP [dm6]	C	A	1.584e^-5	0.44	INTERGENIC
2R	10633007	2R_10633007_SNP [dm3] 2R_14745502_SNP [dm6]	G	A	1.596e^-5	0.44	UPSTREAM Dro & 1 other INTERGENIC
2L	13263711	2L_13263711_SNP [dm3] 2L_13263711_SNP [dm6]	C	T	1.633e^-5	0.44	INTRON CG44085
2R	4827844	2R_4827844_SNP [dm3] 2R_8940339_SNP [dm6]	C	A	1.644e^-5	0.44	UPSTREAM CG13748 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	17791617	2L_17791617_SNP [dm3] 2L_17791617_SNP [dm6]	A	T	1.654e^-5	0.44	UPSTREAM CR43419 INTRON CadN2
X	9083425	X_9083425_SNP [dm3] X_9189392_SNP [dm6]	G	T	1.672e^-5	0.44	NON_SYNONYMOUS_CODING CG12115 DOWNSTREAM mei-P26
2R	4683222	2R_4683222_SNP [dm3] 2R_8795717_SNP [dm6]	C	A	1.675e^-5	0.44	INTERGENIC
2R	16584054	2R_16584054_SNP [dm3] 2R_20696549_SNP [dm6]	A	G	1.699e^-5	0.44	INTERGENIC
2R	15824896	2R_15824896_SNP [dm3] 2R_19937391_SNP [dm6]	C	T	1.702e^-5	0.44	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4850168	2R_4850168_SNP [dm3] 2R_8962663_SNP [dm6]	A	G	1.703e^-5	0.44	UTR_3_PRIME babo DOWNSTREAM CG8216
X	14094268	X_14094268_SNP [dm3] X_14200235_SNP [dm6]	C	A	1.724e^-5	0.44	UTR_5_PRIME CG11590 DOWNSTREAM mir-4917 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
2L	13756742	2L_13756742_SNP [dm3] 2L_13756742_SNP [dm6]	C	T	1.744e^-5	0.44	DOWNSTREAM CR44846 INTRON TM9SF4
3L	4873334	3L_4873334_SNP [dm3] 3L_4873334_SNP [dm6]	C	T	1.762e^-5	0.44	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4791695	2R_4791695_SNP [dm3] 2R_8904190_SNP [dm6]	G	A	1.764e^-5	0.44	UTR_3_PRIME Ggamma1 DOWNSTREAM CG8258
3R	13474664	3R_13474664_SNP [dm3] 3R_17648942_SNP [dm6]	A	G	1.779e^-5	0.44	INTRON CG14322
3R	18001996	3R_18001996_INS [dm3] 3R_22176274_INS [dm6]	T	TT	1.782e^-5	0.44	INTRON SKIP
2R	4805943	2R_4805943_SNP [dm3] 2R_8918438_SNP [dm6]	G	A	1.802e^-5	0.44	SYNONYMOUS_CODING CG34219 DOWNSTREAM CG8248 & 1 other
2L	10381226	2L_10381226_SNP [dm3] 2L_10381226_SNP [dm6]	G	C	1.807e^-5	0.44	NON_SYNONYMOUS_CODING gny
3R	19155959	3R_19155959_SNP [dm3] 3R_23330237_SNP [dm6]	A	G	1.838e^-5	0.442	INTRON pnt
2R	15268200	2R_15268200_SNP [dm3] 2R_19380695_SNP [dm6]	C	A	1.937e^-5	0.445	UPSTREAM CG10073 DOWNSTREAM CG10062 INTRON CG10073
3L	4873509	3L_4873509_SNP [dm3] 3L_4873509_SNP [dm6]	A	T	1.943e^-5	0.445	INTRON CG17150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20437281	2L_20437281_SNP [dm3] 2L_20437281_SNP [dm6]	C	T	1.954e^-5	0.445	INTRON CG31688 EXON CR43607	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1343241	2R_1343241_SNP [dm3] 2R_5455736_SNP [dm6]	T	C	2.063e^-5	0.445	UTR_3_PRIME laccase2
3L	5372027	3L_5372027_DEL [dm3] 3L_5378927_DEL [dm6]	GG	G	2.100e^-5	0.445	DOWNSTREAM CR45743 INTRON Ir64a
2L	20145355	2L_20145355_SNP [dm3] 2L_20145355_SNP [dm6]	A	T	2.105e^-5	0.445	INTERGENIC
2R	8344038	2R_8344038_SNP [dm3] 2R_12456533_SNP [dm6]	G	A	2.128e^-5	0.445	INTRON Lac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	11884217	2L_11884217_SNP [dm3] 2L_11884217_SNP [dm6]	T	A	2.159e^-5	0.445	INTRON Pde1c
2L	20262953	2L_20262953_SNP [dm3] 2L_20262953_SNP [dm6]	T	A	2.162e^-5	0.445	DOWNSTREAM CG17570 INTERGENIC
X	10943443	X_10943443_SNP [dm3] X_11049410_SNP [dm6]	C	A	2.171e^-5	0.445	UTR_3_PRIME CG11160
3R	22832678	3R_22832678_SNP [dm3] 3R_27006956_SNP [dm6]	A	G	2.219e^-5	0.445	INTRON RYa-R & 1 other	TF binding site mE1_TFBS_cad
3L	10556412	3L_10556412_SNP [dm3] 3L_10563312_SNP [dm6]	A	G	2.234e^-5	0.445	INTRON A2bp1
3R	10157048	3R_10157048_SNP [dm3] 3R_14331326_SNP [dm6]	A	T	2.256e^-5	0.445	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	11140814	2R_11140814_SNP [dm3] 2R_15253309_SNP [dm6]	A	G	2.257e^-5	0.445	INTRON scb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	4836972	2R_4836972_SNP [dm3] 2R_8949467_SNP [dm6]	G	A	2.279e^-5	0.445	DOWNSTREAM CG8229 INTRON CG8229 & 1 other
3R	18002008	3R_18002008_SNP [dm3] 3R_22176286_SNP [dm6]	A	T	2.280e^-5	0.445	INTRON SKIP
2L	11884214	2L_11884214_SNP [dm3] 2L_11884214_SNP [dm6]	T	C	2.289e^-5	0.445	INTRON Pde1c
2L	13142363	2L_13142363_SNP [dm3] 2L_13142363_SNP [dm6]	G	A	2.299e^-5	0.445	DOWNSTREAM CG9928 & 1 other INTERGENIC
2R	4894432	2R_4894432_SNP [dm3] 2R_9006927_SNP [dm6]	G	T	2.319e^-5	0.445	UPSTREAM Np DOWNSTREAM CG8172 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	20141508	2L_20141508_SNP [dm3] 2L_20141508_SNP [dm6]	C	A	2.326e^-5	0.445	INTERGENIC
3L	4873169	3L_4873169_SNP [dm3] 3L_4873169_SNP [dm6]	C	T	2.350e^-5	0.445	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11884121	2L_11884121_SNP [dm3] 2L_11884121_SNP [dm6]	C	T	2.412e^-5	0.446	INTRON Pde1c
2L	20289085	2L_20289085_SNP [dm3] 2L_20289085_SNP [dm6]	G	A	2.420e^-5	0.446	INTERGENIC
3L	20979911	3L_20979911_DEL [dm3] 3L_20986811_DEL [dm6]	CGACACGCGGCCGACGAGAG...	C	2.437e^-5	0.446	INTERGENIC
2R	13072510	2R_13072510_SNP [dm3] 2R_17185005_SNP [dm6]	C	T	2.450e^-5	0.446	UPSTREAM CR44387 INTERGENIC
3L	17275323	3L_17275323_SNP [dm3] 3L_17282223_SNP [dm6]	C	A	2.500e^-5	0.447	INTERGENIC
3R	19907144	3R_19907144_SNP [dm3] 3R_24081422_SNP [dm6]	G	A	2.503e^-5	0.447	INTRON 4EHP
3L	3401114	3L_3401114_SNP [dm3] 3L_3401114_SNP [dm6]	A	C	2.579e^-5	0.448	DOWNSTREAM sty INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4827223	2R_4827223_SNP [dm3] 2R_8939718_SNP [dm6]	C	T	2.597e^-5	0.448	SYNONYMOUS_CODING FANCI UPSTREAM CG13748
2L	20300346	2L_20300346_SNP [dm3] 2L_20300346_SNP [dm6]	A	C	2.604e^-5	0.448	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	19155964	3R_19155964_SNP [dm3] 3R_23330242_SNP [dm6]	C	A	2.628e^-5	0.448	INTRON pnt
4	655975	4_655975_SNP [dm3] 4_635349_SNP [dm6]	A	G	2.693e^-5	0.448	UTR_3_PRIME CG1732 DOWNSTREAM CG9935
3R	25459149	3R_25459149_SNP [dm3] 3R_29633427_SNP [dm6]	G	C	2.716e^-5	0.448	INTRON Dop1R2
2R	14093087	2R_14093087_SNP [dm3] 2R_18205582_SNP [dm6]	T	A	2.732e^-5	0.448	INTERGENIC
2L	6607841	2L_6607841_SNP [dm3] 2L_6607841_SNP [dm6]	T	C	2.775e^-5	0.448	INTERGENIC
2L	17791532	2L_17791532_SNP [dm3] 2L_17791532_SNP [dm6]	A	G	2.815e^-5	0.448	UPSTREAM CR43419 INTRON CadN2	TF binding site mE1_TFBS_sbb
2L	1922656	2L_1922656_SNP [dm3] 2L_1922656_SNP [dm6]	T	C	2.858e^-5	0.448	INTRON CG7337
X	12247634	X_12247634_SNP [dm3] X_12353601_SNP [dm6]	T	A	2.870e^-5	0.448	INTERGENIC
2R	15824738	2R_15824738_SNP [dm3] 2R_19937233_SNP [dm6]	A	G	2.885e^-5	0.448	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14266213	X_14266213_DEL [dm3] X_14372180_DEL [dm6]	TT	T	2.886e^-5	0.448	INTRON dpr8
3L	1140097	3L_1140097_SNP [dm3] 3L_1140097_SNP [dm6]	A	G	2.899e^-5	0.448	DOWNSTREAM bab2 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	16363268	X_16363268_SNP [dm3] X_16469235_SNP [dm6]	A	T	2.918e^-5	0.448	INTRON para
2R	14093086	2R_14093086_SNP [dm3] 2R_18205581_SNP [dm6]	A	T	2.993e^-5	0.448	INTERGENIC
3R	23206036	3R_23206036_SNP [dm3] 3R_27380314_SNP [dm6]	G	A	3.049e^-5	0.448	UTR_3_PRIME side INTRON side
3R	24818445	3R_24818445_SNP [dm3] 3R_28992723_SNP [dm6]	T	A	3.104e^-5	0.448	DOWNSTREAM wat INTERGENIC
2L	7944013	2L_7944013_SNP [dm3] 2L_7944013_SNP [dm6]	T	C	3.121e^-5	0.448	INTRON Snoo
2R	5078130	2R_5078130_SNP [dm3] 2R_9190625_SNP [dm6]	T	C	3.125e^-5	0.448	UPSTREAM CG8026 INTRON CG8026 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9639505	3R_9639505_SNP [dm3] 3R_13813783_SNP [dm6]	G	A	3.128e^-5	0.448	UTR_5_PRIME tal-AA UTR_3_PRIME tal-1A & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	21211650	3R_21211650_SNP [dm3] 3R_25385928_SNP [dm6]	T	A	3.130e^-5	0.448	INTRON Fur1
3R	20901309	3R_20901309_SNP [dm3] 3R_25075587_SNP [dm6]	T	C	3.135e^-5	0.448	UPSTREAM CG9996 INTRON CG11920	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14131502	3L_14131502_SNP [dm3] 3L_14138402_SNP [dm6]	A	G	3.167e^-5	0.448	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
3R	26256477	3R_26256477_SNP [dm3] 3R_30430755_SNP [dm6]	C	T	3.185e^-5	0.448	SYNONYMOUS_CODING CG15533	TF binding site mE1_TFBS_cad
3R	26808495	3R_26808495_SNP [dm3] 3R_30982773_SNP [dm6]	G	C	3.187e^-5	0.448	INTRON 5-HT7
2L	20313896	2L_20313896_SNP [dm3] 2L_20313896_SNP [dm6]	C	A	3.215e^-5	0.448	INTRON spir
2R	9634476	2R_9634476_SNP [dm3] 2R_13746971_SNP [dm6]	A	T	3.234e^-5	0.448	UTR_3_PRIME fas
2L	20268713	2L_20268713_SNP [dm3] 2L_20268713_SNP [dm6]	T	C	3.239e^-5	0.448	INTERGENIC
2R	8980824	2R_8980824_SNP [dm3] 2R_13093319_SNP [dm6]	C	T	3.240e^-5	0.448	INTERGENIC
2L	20481731	2L_20481731_SNP [dm3] 2L_20481731_SNP [dm6]	C	A	3.248e^-5	0.448	INTRON CR44980	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4870685	3L_4870685_SNP [dm3] 3L_4870685_SNP [dm6]	C	A	3.323e^-5	0.453	SYNONYMOUS_CODING CG17150	TF binding site BDTNP1_TFBS_sna
3L	8144047	3L_8144047_SNP [dm3] 3L_8150947_SNP [dm6]	G	T	3.348e^-5	0.453	INTRON CG13676
2L	20213753	2L_20213753_SNP [dm3] 2L_20213753_SNP [dm6]	A	G	3.377e^-5	0.453	INTERGENIC	transposable element FlyBase
2L	6227751	2L_6227751_SNP [dm3] 2L_6227751_SNP [dm6]	G	A	3.422e^-5	0.453	DOWNSTREAM Ugt37b1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	16584147	2R_16584147_SNP [dm3] 2R_20696642_SNP [dm6]	A	G	3.500e^-5	0.453	INTERGENIC
2L	20376524	2L_20376524_SNP [dm3] 2L_20376524_SNP [dm6]	C	T	3.537e^-5	0.453	DOWNSTREAM CG16798 INTERGENIC
2L	20325958	2L_20325958_SNP [dm3] 2L_20325958_SNP [dm6]	G	T	3.538e^-5	0.453	INTRON spir	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3939907	2L_3939907_SNP [dm3] 2L_3939907_SNP [dm6]	G	T	3.561e^-5	0.453	INTRON fred
2R	16584045	2R_16584045_SNP [dm3] 2R_20696540_SNP [dm6]	A	G	3.568e^-5	0.453	INTERGENIC
2L	19878202	2L_19878202_SNP [dm3] 2L_19878202_SNP [dm6]	G	A	3.615e^-5	0.453	INTRON sick
2L	20264644	2L_20264644_INS [dm3] 2L_20264644_INS [dm6]	T	TGTTGGAATATACTATTCAA...	3.692e^-5	0.453	UPSTREAM CG17570 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	13975363	3L_13975363_SNP [dm3] 3L_13982263_SNP [dm6]	C	T	3.776e^-5	0.453	SYNONYMOUS_CODING CG17364 INTRON CG17364
X	3811901	X_3811901_SNP [dm3] X_3917868_SNP [dm6]	G	C	3.789e^-5	0.453	INTRON CG42541
2L	11884242	2L_11884242_SNP [dm3] 2L_11884242_SNP [dm6]	T	C	3.837e^-5	0.453	INTRON Pde1c
3R	19155962	3R_19155962_SNP [dm3] 3R_23330240_SNP [dm6]	G	A	3.854e^-5	0.453	INTRON pnt
3L	4873160	3L_4873160_SNP [dm3] 3L_4873160_SNP [dm6]	G	A	3.864e^-5	0.453	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13586186	2L_13586186_SNP [dm3] 2L_13586186_SNP [dm6]	G	A	3.871e^-5	0.453	INTRON kuz
2L	20229649	2L_20229649_SNP [dm3] 2L_20229649_SNP [dm6]	A	T	3.891e^-5	0.453	INTERGENIC
2R	18631077	2R_18631077_DEL [dm3] 2R_22743572_DEL [dm6]	TT	T	3.900e^-5	0.453	UTR_3_PRIME CG42260	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	19054437	3R_19054437_SNP [dm3] 3R_23228715_SNP [dm6]	C	T	3.906e^-5	0.453	UTR_3_PRIME CG4467	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	9355203	2L_9355203_SNP [dm3] 2L_9355203_SNP [dm6]	T	C	3.939e^-5	0.453	INTERGENIC
2L	20483608	2L_20483608_SNP [dm3] 2L_20483608_SNP [dm6]	G	C	3.959e^-5	0.453	INTRON CR44980	TF binding site BDTNP1_TFBS_twi
3L	4871873	3L_4871873_DEL [dm3] 3L_4871873_DEL [dm6]	TC	T	3.961e^-5	0.453	INTRON CG17150	TF binding site mE1_TFBS_HSA
2R	6157702	2R_6157702_DEL [dm3] 2R_10270197_DEL [dm6]	GG	G	3.969e^-5	0.453	DOWNSTREAM CG12910 INTRON CAP
3R	19054441	3R_19054441_SNP [dm3] 3R_23228719_SNP [dm6]	G	C	3.992e^-5	0.453	UTR_3_PRIME CG4467	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	27236086	3R_27236086_SNP [dm3] 3R_31410364_SNP [dm6]	A	T	4.010e^-5	0.453	UTR_5_PRIME Gprk2 INTRON Gprk2
2L	20141079	2L_20141079_SNP [dm3] 2L_20141079_SNP [dm6]	T	A	4.024e^-5	0.453	INTERGENIC
2R	9634475	2R_9634475_SNP [dm3] 2R_13746970_SNP [dm6]	T	A	4.029e^-5	0.453	UTR_3_PRIME fas
3L	17275338	3L_17275338_SNP [dm3] 3L_17282238_SNP [dm6]	C	G	4.035e^-5	0.453	INTERGENIC
2L	3939899	2L_3939899_SNP [dm3] 2L_3939899_SNP [dm6]	C	A	4.057e^-5	0.453	INTRON fred
3R	26649885	3R_26649885_SNP [dm3] 3R_30824163_SNP [dm6]	A	G	4.067e^-5	0.453	INTRON cindr	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	4829306	2R_4829306_SNP [dm3] 2R_8941801_SNP [dm6]	G	A	4.080e^-5	0.453	DOWNSTREAM CG13748 EXON CR44273
2L	20223364	2L_20223364_SNP [dm3] 2L_20223364_SNP [dm6]	C	G	4.094e^-5	0.453	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13141397	2L_13141397_SNP [dm3] 2L_13141397_SNP [dm6]	A	G	4.124e^-5	0.453	INTERGENIC
2R	8333018	2R_8333018_SNP [dm3] 2R_12445513_SNP [dm6]	G	A	4.133e^-5	0.453	INTRON Dyb	TF binding site mE1_TFBS_chinmo
3L	2412228	3L_2412228_SNP [dm3] 3L_2412228_SNP [dm6]	A	G	4.189e^-5	0.457	UTR_5_PRIME CG45186 INTRON CG45186	TF binding site mE1_TFBS_HSA
3R	10258266	3R_10258266_SNP [dm3] 3R_14432544_SNP [dm6]	G	T	4.245e^-5	0.459	NON_SYNONYMOUS_CODING cv-c
3L	17275347	3L_17275347_SNP [dm3] 3L_17282247_SNP [dm6]	T	C	4.272e^-5	0.459	INTERGENIC
2L	20238958	2L_20238958_SNP [dm3] 2L_20238958_SNP [dm6]	T	G	4.284e^-5	0.459	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	9639511	3R_9639511_SNP [dm3] 3R_13813789_SNP [dm6]	T	C	4.349e^-5	0.462	UTR_5_PRIME tal-AA UTR_3_PRIME tal-1A & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	13756841	2L_13756841_SNP [dm3] 2L_13756841_SNP [dm6]	T	A	4.374e^-5	0.462	DOWNSTREAM CR44846 INTRON TM9SF4
2L	10817657	2L_10817657_SNP [dm3] 2L_10817657_SNP [dm6]	T	A	4.383e^-5	0.462	INTRON Nos
2L	1922651	2L_1922651_SNP [dm3] 2L_1922651_SNP [dm6]	G	C	4.456e^-5	0.467	INTRON CG7337
2R	4683332	2R_4683332_SNP [dm3] 2R_8795827_SNP [dm6]	A	G	4.488e^-5	0.468	INTERGENIC
2L	10381351	2L_10381351_SNP [dm3] 2L_10381351_SNP [dm6]	T	C	4.544e^-5	0.469	UPSTREAM CG5096 INTRON gny
2R	4839090	2R_4839090_SNP [dm3] 2R_8951585_SNP [dm6]	G	C	4.549e^-5	0.469	UPSTREAM Tom7 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	3262787	X_3262787_SNP [dm3] X_3368754_SNP [dm6]	G	A	4.615e^-5	0.47	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	20289950	2L_20289950_SNP [dm3] 2L_20289950_SNP [dm6]	G	A	4.625e^-5	0.47	INTERGENIC
2R	4812692	2R_4812692_SNP [dm3] 2R_8925187_SNP [dm6]	A	G	4.636e^-5	0.47	UTR_3_PRIME CG8243 UPSTREAM CG8237
3L	4871845	3L_4871845_SNP [dm3] 3L_4871845_SNP [dm6]	G	A	4.660e^-5	0.47	INTRON CG17150	TF binding site mE1_TFBS_HSA
3R	9860805	3R_9860805_SNP [dm3] 3R_14035083_SNP [dm6]	T	C	4.722e^-5	0.473	UTR_3_PRIME CG9922 DOWNSTREAM CG3061
X	8563599	X_8563599_SNP [dm3] X_8669566_SNP [dm6]	G	T	4.795e^-5	0.473	INTERGENIC
3L	7593666	3L_7593666_SNP [dm3] 3L_7600566_SNP [dm6]	A	G	4.820e^-5	0.473	INTRON CG33275
3R	17769455	3R_17769455_SNP [dm3] 3R_21943733_SNP [dm6]	A	C	4.833e^-5	0.473	INTERGENIC
2L	12681109	2L_12681109_SNP [dm3] 2L_12681109_SNP [dm6]	C	T	4.836e^-5	0.473	INTRON pdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18524225	3R_18524225_SNP [dm3] 3R_22698503_SNP [dm6]	C	T	4.848e^-5	0.473	SYNONYMOUS_CODING Cyp6d4 DOWNSTREAM cd	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	4894431	2R_4894431_SNP [dm3] 2R_9006926_SNP [dm6]	T	G	4.877e^-5	0.473	UPSTREAM Np DOWNSTREAM CG8172 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	16705398	3L_16705398_SNP [dm3] 3L_16712298_SNP [dm6]	A	T	4.952e^-5	0.473	UTR_5_PRIME Dab UPSTREAM Lasp & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	6227744	2L_6227744_SNP [dm3] 2L_6227744_SNP [dm6]	A	T	4.955e^-5	0.473	DOWNSTREAM Ugt37b1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	16380726	X_16380726_SNP [dm3] X_16486693_SNP [dm6]	T	C	4.958e^-5	0.473	INTRON para
X	4617923	X_4617923_SNP [dm3] X_4723890_SNP [dm6]	A	T	4.970e^-5	0.473	INTRON Proc-R
2L	20322090	2L_20322090_SNP [dm3] 2L_20322090_SNP [dm6]	A	G	5.024e^-5	0.476	INTRON spir	TF binding site mE1_TFBS_cad
2R	9632540	2R_9632540_SNP [dm3] 2R_13745035_SNP [dm6]	A	G	5.057e^-5	0.477	INTRON fas	TF binding site mE1_TFBS_chinmo
2L	20132606	2L_20132606_SNP [dm3] 2L_20132606_SNP [dm6]	C	A	5.099e^-5	0.478	INTERGENIC	TF binding site mE1_TFBS_inv
3R	25950636	3R_25950636_SNP [dm3] 3R_30124914_SNP [dm6]	T	C	5.119e^-5	0.478	UPSTREAM CG45073 DOWNSTREAM Ppi1 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6395497	3L_6395497_SNP [dm3] 3L_6402397_SNP [dm6]	T	C	5.185e^-5	0.481	INTRON CG42747
2L	12681166	2L_12681166_SNP [dm3] 2L_12681166_SNP [dm6]	T	C	5.201e^-5	0.481	INTRON pdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4880296	3L_4880296_SNP [dm3] 3L_4880296_SNP [dm6]	T	C	5.281e^-5	0.486	INTRON CG17150
2L	2249914	2L_2249914_SNP [dm3] 2L_2249914_SNP [dm6]	T	G	5.332e^-5	0.488	DOWNSTREAM Ser12 INTERGENIC
X	3262030	X_3262030_SNP [dm3] X_3367997_SNP [dm6]	T	C	5.424e^-5	0.492	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17100230	2R_17100230_SNP [dm3] 2R_21212725_SNP [dm6]	A	G	5.428e^-5	0.492	UTR_3_PRIME CG44245 DOWNSTREAM CG4302
2R	4821180	2R_4821180_SNP [dm3] 2R_8933675_SNP [dm6]	C	T	5.490e^-5	0.495	NON_SYNONYMOUS_CODING CG13749 DOWNSTREAM PAN2 & 1 other
2L	11953728	2L_11953728_SNP [dm3] 2L_11953728_SNP [dm6]	T	A	5.568e^-5	0.496	UPSTREAM bft EXON CR43314
2R	4827787	2R_4827787_SNP [dm3] 2R_8940282_SNP [dm6]	G	A	5.596e^-5	0.496	UPSTREAM CG13748 & 1 other INTERGENIC
2L	3939900	2L_3939900_SNP [dm3] 2L_3939900_SNP [dm6]	C	A	5.618e^-5	0.496	INTRON fred
3R	25821934	3R_25821934_SNP [dm3] 3R_29996212_SNP [dm6]	T	C	5.628e^-5	0.496	SYNONYMOUS_CODING Sas-6 UPSTREAM CG7903 DOWNSTREAM CG15525	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5186720	3L_5186720_SNP [dm3] 3L_5193620_SNP [dm6]	A	G	5.633e^-5	0.496	INTRON shep
2L	5643136	2L_5643136_SNP [dm3] 2L_5643136_SNP [dm6]	T	C	5.679e^-5	0.497	DOWNSTREAM mir-964 INTRON CG31646
2L	3939894	2L_3939894_SNP [dm3] 2L_3939894_SNP [dm6]	A	T	5.693e^-5	0.497	INTRON fred
2L	20243884	2L_20243884_SNP [dm3] 2L_20243884_SNP [dm6]	C	G	5.728e^-5	0.497	INTERGENIC
3L	12649955	3L_12649955_SNP [dm3] 3L_12656855_SNP [dm6]	T	G	5.786e^-5	0.499	INTERGENIC
3L	13220169	3L_13220169_DEL [dm3] 3L_13227069_DEL [dm6]	AA	A	5.803e^-5	0.499	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2R	16692395	2R_16692395_SNP [dm3] 2R_20804890_SNP [dm6]	G	A	5.873e^-5	0.501	INTERGENIC
2R	5122789	2R_5122789_SNP [dm3] 2R_9235284_SNP [dm6]	T	A	5.874e^-5	0.501	NON_SYNONYMOUS_CODING hig	TF binding site mE1_TFBS_chinmo
2L	20301266	2L_20301266_SNP [dm3] 2L_20301266_SNP [dm6]	T	C	5.901e^-5	0.501	INTERGENIC
3R	15768218	3R_15768218_SNP [dm3] 3R_19942496_SNP [dm6]	T	C	6.021e^-5	0.509	INTRON Hs6st
3L	2396116	3L_2396116_SNP [dm3] 3L_2396116_SNP [dm6]	G	A	6.093e^-5	0.512	INTRON CG45186
3R	25961269	3R_25961269_SNP [dm3] 3R_30135547_SNP [dm6]	A	T	6.178e^-5	0.516	NON_SYNONYMOUS_CODING AdoR UPSTREAM Tpi	TF binding site mE1_TFBS_chinmo
2R	9601314	2R_9601314_SNP [dm3] 2R_13713809_SNP [dm6]	T	C	6.186e^-5	0.516	SYNONYMOUS_CODING fas
2R	16934390	2R_16934390_SNP [dm3] 2R_21046885_SNP [dm6]	T	G	6.245e^-5	0.518	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	16388169	3L_16388169_SNP [dm3] 3L_16395069_SNP [dm6]	T	C	6.282e^-5	0.519	SYNONYMOUS_CODING Grp INTRON CG44836	TF binding site mE1_TFBS_HSA
2R	6728792	2R_6728792_SNP [dm3] 2R_10841287_SNP [dm6]	T	G	6.316e^-5	0.519	NON_SYNONYMOUS_CODING CG30015	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	5917882	3L_5917882_SNP [dm3] 3L_5924782_SNP [dm6]	A	G	6.336e^-5	0.519	INTRON Vap-33B
2R	11140623	2R_11140623_SNP [dm3] 2R_15253118_SNP [dm6]	A	G	6.389e^-5	0.52	INTRON scb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	4888717	2R_4888717_SNP [dm3] 2R_9001212_SNP [dm6]	G	A	6.419e^-5	0.52	INTRON Np
3L	18834133	3L_18834133_SNP [dm3] 3L_18841033_SNP [dm6]	G	T	6.431e^-5	0.52	UPSTREAM Indy & 1 other INTRON Indy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	4881638	2R_4881638_SNP [dm3] 2R_8994133_SNP [dm6]	G	A	6.462e^-5	0.52	SYNONYMOUS_CODING Np	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4836650	2R_4836650_SNP [dm3] 2R_8949145_SNP [dm6]	G	C	6.520e^-5	0.522	DOWNSTREAM CG8229 INTRON CG8229 & 1 other	TF binding site mE1_TFBS_chinmo
2L	13756797	2L_13756797_SNP [dm3] 2L_13756797_SNP [dm6]	A	T	6.599e^-5	0.522	DOWNSTREAM CR44846 INTRON TM9SF4
2R	15813512	2R_15813512_SNP [dm3] 2R_19926007_SNP [dm6]	G	A	6.634e^-5	0.522	UPSTREAM CR44626 INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2L	20294000	2L_20294000_SNP [dm3] 2L_20294000_SNP [dm6]	G	A	6.645e^-5	0.522	UPSTREAM CG12617 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	7266169	2L_7266169_SNP [dm3] 2L_7266169_SNP [dm6]	C	T	6.647e^-5	0.522	INTRON Wnt4	TF binding site BDTNP1_TFBS_twi
2R	4849739	2R_4849739_SNP [dm3] 2R_8962234_SNP [dm6]	C	T	6.652e^-5	0.522	UTR_3_PRIME babo DOWNSTREAM CG8216
3R	17538055	3R_17538055_SNP [dm3] 3R_21712333_SNP [dm6]	T	A	6.702e^-5	0.524	INTRON CG31176
2L	19888191	2L_19888191_SNP [dm3] 2L_19888191_SNP [dm6]	C	A	6.761e^-5	0.526	INTRON sick	TF binding site mE1_TFBS_bab1
3L	15193781	3L_15193781_SNP [dm3] 3L_15200681_SNP [dm6]	A	G	6.792e^-5	0.526	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2L	10196817	2L_10196817_SNP [dm3] 2L_10196817_SNP [dm6]	G	A	6.912e^-5	0.534	NON_SYNONYMOUS_CODING Sur
3R	24886708	3R_24886708_SNP [dm3] 3R_29060986_SNP [dm6]	A	G	6.961e^-5	0.535	INTRON Cul5	TF binding site mE1_TFBS_sens
2R	4828797	2R_4828797_SNP [dm3] 2R_8941292_SNP [dm6]	A	G	7.031e^-5	0.537	UPSTREAM CR44273 DOWNSTREAM CG13748 INTERGENIC
2L	15173290	2L_15173290_SNP [dm3] 2L_15173290_SNP [dm6]	C	A	7.049e^-5	0.537	INTRON CG4168
2R	20720818	2R_20720818_SNP [dm3] 2R_24833295_SNP [dm6]	G	A	7.137e^-5	0.542	INTRON Dll	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8327186	2R_8327186_SNP [dm3] 2R_12439681_SNP [dm6]	A	G	7.246e^-5	0.543	DOWNSTREAM CG30334 INTRON Dyb
3R	23206017	3R_23206017_SNP [dm3] 3R_27380295_SNP [dm6]	C	T	7.349e^-5	0.543	UTR_3_PRIME side INTRON side
3L	7002643	3L_7002643_SNP [dm3] 3L_7009543_SNP [dm6]	C	T	7.365e^-5	0.543	INTRON Mp
2L	13142029	2L_13142029_SNP [dm3] 2L_13142029_SNP [dm6]	T	C	7.385e^-5	0.543	DOWNSTREAM CG9928 INTERGENIC
2L	20390016	2L_20390016_SNP [dm3] 2L_20390016_SNP [dm6]	C	A	7.393e^-5	0.543	INTRON CG10947	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10381662	2L_10381662_SNP [dm3] 2L_10381662_SNP [dm6]	C	T	7.415e^-5	0.543	NON_SYNONYMOUS_CODING gny UPSTREAM CG5096
3R	26364187	3R_26364187_SNP [dm3] 3R_30538465_SNP [dm6]	A	C	7.417e^-5	0.543	UPSTREAM tmod INTRON tmod
3L	1935439	3L_1935439_SNP [dm3] 3L_1935439_SNP [dm6]	G	A	7.443e^-5	0.543	SYNONYMOUS_CODING CG5687	TF binding site mE1_TFBS_sens
3L	4871912	3L_4871912_SNP [dm3] 3L_4871912_SNP [dm6]	A	G	7.459e^-5	0.543	INTRON CG17150	TF binding site mE1_TFBS_HSA
3L	3878520	3L_3878520_SNP [dm3] 3L_3878520_SNP [dm6]	T	C	7.489e^-5	0.543	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	12087428	2L_12087428_SNP [dm3] 2L_12087428_SNP [dm6]	T	C	7.500e^-5	0.543	EXON CR44593	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	15813347	2R_15813347_SNP [dm3] 2R_19925842_SNP [dm6]	A	C	7.514e^-5	0.543	EXON CR44626	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2R	4841849	2R_4841849_SNP [dm3] 2R_8954344_SNP [dm6]	C	A	7.541e^-5	0.543	INTRON babo
2L	8261186	2L_8261186_SNP [dm3] 2L_8261186_SNP [dm6]	C	A	7.580e^-5	0.543	SYNONYMOUS_CODING Btk29A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18001715	3R_18001715_SNP [dm3] 3R_22175993_SNP [dm6]	T	C	7.588e^-5	0.543	INTRON SKIP
2R	16852184	2R_16852184_SNP [dm3] 2R_20964679_SNP [dm6]	G	A	7.641e^-5	0.543	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	20313244	2L_20313244_SNP [dm3] 2L_20313244_SNP [dm6]	G	A	7.663e^-5	0.543	INTRON spir
2L	20243126	2L_20243126_SNP [dm3] 2L_20243126_SNP [dm6]	T	C	7.677e^-5	0.543	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	20252350	2L_20252350_SNP [dm3] 2L_20252350_SNP [dm6]	G	T	7.807e^-5	0.548	INTERGENIC
3L	10468490	3L_10468490_SNP [dm3] 3L_10475390_SNP [dm6]	C	A	7.821e^-5	0.548	INTERGENIC
2R	12693138	2R_12693138_SNP [dm3] 2R_16805633_SNP [dm6]	A	G	7.840e^-5	0.548	INTERGENIC
2L	8261135	2L_8261135_SNP [dm3] 2L_8261135_SNP [dm6]	T	G	7.853e^-5	0.548	SYNONYMOUS_CODING Btk29A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19451886	2R_19451886_SNP [dm3] 2R_23564363_SNP [dm6]	T	C	7.909e^-5	0.549	SYNONYMOUS_CODING CG30184 UPSTREAM apt DOWNSTREAM Pi3K59F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	22914067	2L_22914067_SNP [dm3] 2L_23021335_SNP [dm6]	C	T	7.936e^-5	0.549	INTRON Cht3
2R	4819600	2R_4819600_SNP [dm3] 2R_8932095_SNP [dm6]	G	A	7.956e^-5	0.549	SYNONYMOUS_CODING PAN2
X	6263522	X_6263522_INS [dm3] X_6369489_INS [dm6]	T	TT	8.071e^-5	0.549	INTRON Marf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10626384	2R_10626384_SNP [dm3] 2R_14738879_SNP [dm6]	T	G	8.077e^-5	0.549	DOWNSTREAM CG12858 EXON CR43428	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24818634	3R_24818634_SNP [dm3] 3R_28992912_SNP [dm6]	C	T	8.087e^-5	0.549	DOWNSTREAM wat INTERGENIC
2L	13756801	2L_13756801_SNP [dm3] 2L_13756801_SNP [dm6]	C	A	8.164e^-5	0.549	DOWNSTREAM CR44846 INTRON TM9SF4
3R	19054436	3R_19054436_SNP [dm3] 3R_23228714_SNP [dm6]	T	C	8.180e^-5	0.549	UTR_3_PRIME CG4467	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	7144216	3L_7144216_SNP [dm3] 3L_7151116_SNP [dm6]	G	T	8.210e^-5	0.549	INTRON corn	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20134127	2L_20134127_SNP [dm3] 2L_20134127_SNP [dm6]	C	T	8.213e^-5	0.549	NON_SYNONYMOUS_CODING CG10651
2R	18402990	2R_18402990_SNP [dm3] 2R_22515485_SNP [dm6]	C	T	8.272e^-5	0.549	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18067436	2R_18067436_SNP [dm3] 2R_22179931_SNP [dm6]	T	C	8.288e^-5	0.549	UTR_5_PRIME CG11275 INTRON CG11170	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	13220152	3L_13220152_INS [dm3] 3L_13227052_INS [dm6]	A	AA	8.289e^-5	0.549	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
X	7918956	X_7918956_INS [dm3] X_8024923_INS [dm6]	C	CC	8.296e^-5	0.549	INTRON Tbh
2L	20379286	2L_20379286_SNP [dm3] 2L_20379286_SNP [dm6]	G	T	8.310e^-5	0.549	NON_SYNONYMOUS_CODING CG16798
3L	4872983	3L_4872983_SNP [dm3] 3L_4872983_SNP [dm6]	G	A	8.434e^-5	0.55	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9573284	2R_9573284_SNP [dm3] 2R_13685779_SNP [dm6]	G	C	8.438e^-5	0.55	INTRON fas
2L	11884146	2L_11884146_SNP [dm3] 2L_11884146_SNP [dm6]	T	A	8.479e^-5	0.55	INTRON Pde1c
X	3811904	X_3811904_SNP [dm3] X_3917871_SNP [dm6]	C	T	8.483e^-5	0.55	INTRON CG42541
3R	18141147	3R_18141147_SNP [dm3] 3R_22315425_SNP [dm6]	G	A	8.495e^-5	0.55	INTRON CG34377
2R	1329678	2R_1329678_SNP [dm3] 2R_5442173_SNP [dm6]	A	G	8.512e^-5	0.55	INTRON laccase2
3R	24886672	3R_24886672_SNP [dm3] 3R_29060950_SNP [dm6]	T	C	8.542e^-5	0.55	SYNONYMOUS_CODING Cul5	TF binding site mE1_TFBS_sens
3L	4873506	3L_4873506_SNP [dm3] 3L_4873506_SNP [dm6]	G	C	8.563e^-5	0.55	INTRON CG17150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17392043	3L_17392043_SNP [dm3] 3L_17398943_SNP [dm6]	T	C	8.666e^-5	0.552	INTRON blot
2R	4765289	2R_4765289_INS [dm3] 2R_8877784_INS [dm6]	A	AA	8.714e^-5	0.552	INTRON RyR	TF binding site mE1_TFBS_HSA
3L	10552604	3L_10552604_SNP [dm3] 3L_10559504_SNP [dm6]	T	C	8.731e^-5	0.552	UPSTREAM CG6527 INTRON A2bp1
X	6263524	X_6263524_SNP [dm3] X_6369491_SNP [dm6]	C	A	8.732e^-5	0.552	INTRON Marf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8058169	3R_8058169_SNP [dm3] 3R_12232447_SNP [dm6]	A	G	8.759e^-5	0.552	SYNONYMOUS_CODING Pglym87 DOWNSTREAM Cyp313a5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6155708	2R_6155708_SNP [dm3] 2R_10268203_SNP [dm6]	T	C	8.777e^-5	0.552	SYNONYMOUS_CODING CG12910 UPSTREAM CAP	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4873060	3L_4873060_SNP [dm3] 3L_4873060_SNP [dm6]	T	G	8.844e^-5	0.552	INTRON CG17150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20374844	2L_20374844_SNP [dm3] 2L_20374844_SNP [dm6]	G	A	8.856e^-5	0.552	UPSTREAM Ugt37a1 INTERGENIC
3R	25446311	3R_25446311_SNP [dm3] 3R_29620589_SNP [dm6]	G	C	8.919e^-5	0.552	UTR_3_PRIME CG1907	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	19153967	3R_19153967_SNP [dm3] 3R_23328245_SNP [dm6]	G	A	8.921e^-5	0.552	INTRON pnt
3R	8067244	3R_8067244_SNP [dm3] 3R_12241522_SNP [dm6]	C	T	8.940e^-5	0.552	DOWNSTREAM CR44036 INTERGENIC	TF binding site mE1_TFBS_inv
X	11038540	X_11038540_SNP [dm3] X_11144507_SNP [dm6]	T	C	8.949e^-5	0.552	DOWNSTREAM CG15202 & 1 other INTRON CG15201	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5927886	3L_5927886_SNP [dm3] 3L_5934786_SNP [dm6]	A	G	9.025e^-5	0.554	INTRON CG33993
3L	7991978	3L_7991978_INS [dm3] 3L_7998878_INS [dm6]	A	AAA	9.040e^-5	0.554	INTRON nmo
3R	19034126	3R_19034126_SNP [dm3] 3R_23208404_SNP [dm6]	C	G	9.115e^-5	0.555	INTRON cnc
2L	9265272	2L_9265272_SNP [dm3] 2L_9265272_SNP [dm6]	A	T	9.181e^-5	0.555	INTRON Ggamma30A
2L	20224612	2L_20224612_SNP [dm3] 2L_20224612_SNP [dm6]	A	G	9.191e^-5	0.555	INTERGENIC
3R	26757018	3R_26757018_SNP [dm3] 3R_30931296_SNP [dm6]	C	T	9.194e^-5	0.555	DOWNSTREAM Ptx1 INTERGENIC
2L	20264870	2L_20264870_SNP [dm3] 2L_20264870_SNP [dm6]	G	A	9.220e^-5	0.555	UPSTREAM CG17570 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	4394371	2R_4394371_SNP [dm3] 2R_8506866_SNP [dm6]	T	C	9.237e^-5	0.555	INTRON mtt
2L	12332767	2L_12332767_SNP [dm3] 2L_12332767_SNP [dm6]	C	T	9.285e^-5	0.555	INTERGENIC
2L	8261168	2L_8261168_SNP [dm3] 2L_8261168_SNP [dm6]	T	C	9.316e^-5	0.555	SYNONYMOUS_CODING Btk29A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5927841	3L_5927841_SNP [dm3] 3L_5934741_SNP [dm6]	A	T	9.317e^-5	0.555	INTRON CG33993
X	6251586	X_6251586_SNP [dm3] X_6357553_SNP [dm6]	G	A	9.376e^-5	0.555	INTRON kdn
2L	3941642	2L_3941642_SNP [dm3] 2L_3941642_SNP [dm6]	C	A	9.385e^-5	0.555	INTRON fred
2R	16583957	2R_16583957_SNP [dm3] 2R_20696452_SNP [dm6]	G	A	9.443e^-5	0.555	INTERGENIC
2L	10380827	2L_10380827_SNP [dm3] 2L_10380827_SNP [dm6]	A	G	9.452e^-5	0.555	DOWNSTREAM dpr19 INTRON gny	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
3R	17066911	3R_17066911_INS [dm3] 3R_21241189_INS [dm6]	T	GGA	9.497e^-5	0.555	INTERGENIC	regulatory region REDfly_CRMs
3R	17066914	3R_17066914_SNP [dm3] 3R_21241192_SNP [dm6]	T	A	9.497e^-5	0.555	INTERGENIC	regulatory region REDfly_CRMs
3L	5521552	3L_5521552_SNP [dm3] 3L_5528452_SNP [dm6]	C	G	9.582e^-5	0.555	INTRON Lkr
2L	20322443	2L_20322443_SNP [dm3] 2L_20322443_SNP [dm6]	T	A	9.614e^-5	0.555	INTRON spir	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16852210	2R_16852210_SNP [dm3] 2R_20964705_SNP [dm6]	C	T	9.641e^-5	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13989195	3R_13989195_SNP [dm3] 3R_18163473_SNP [dm6]	T	C	9.653e^-5	0.555	SYNONYMOUS_CODING CG7218	TF binding site mE1_TFBS_sens
X	14357725	X_14357725_SNP [dm3] X_14463692_SNP [dm6]	G	A	9.673e^-5	0.555	INTERGENIC
2R	18402989	2R_18402989_SNP [dm3] 2R_22515484_SNP [dm6]	G	A	9.684e^-5	0.555	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8333022	2R_8333022_SNP [dm3] 2R_12445517_SNP [dm6]	A	G	9.786e^-5	0.559	INTRON Dyb	TF binding site mE1_TFBS_chinmo
2L	4052968	2L_4052968_SNP [dm3] 2L_4052968_SNP [dm6]	T	C	9.799e^-5	0.559	INTRON ed	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	20481728	2L_20481728_DEL [dm3] 2L_20481728_DEL [dm6]	AA	A	9.926e^-5	0.564	INTRON CR44980	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4821923	2R_4821923_SNP [dm3] 2R_8934418_SNP [dm6]	C	T	1.004e^-4	0.565	UTR_3_PRIME CG13749 DOWNSTREAM FANCI
2R	1373350	2R_1373350_SNP [dm3] 2R_5485845_SNP [dm6]	T	C	1.005e^-4	0.565	INTRON CG30440
2R	9635485	2R_9635485_SNP [dm3] 2R_13747980_SNP [dm6]	C	T	1.007e^-4	0.565	UTR_3_PRIME fas
X	12247964	X_12247964_SNP [dm3] X_12353931_SNP [dm6]	T	C	1.008e^-4	0.565	INTERGENIC
2L	20300390	2L_20300390_INS [dm3] 2L_20300390_INS [dm6]	T	TG	1.009e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	16362187	X_16362187_SNP [dm3] X_16468154_SNP [dm6]	T	C	1.016e^-4	0.567	INTRON para	TF binding site mE1_TFBS_HSA
2R	9502577	2R_9502577_SNP [dm3] 2R_13615072_SNP [dm6]	C	G	1.019e^-4	0.567	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8262172	2L_8262172_SNP [dm3] 2L_8262172_SNP [dm6]	C	T	1.021e^-4	0.567	SYNONYMOUS_CODING Btk29A
X	3262075	X_3262075_SNP [dm3] X_3368042_SNP [dm6]	C	A	1.038e^-4	0.574	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2559699	2L_2559699_SNP [dm3] 2L_2559699_SNP [dm6]	C	A	1.044e^-4	0.575	INTERGENIC
3L	14930431	3L_14930431_SNP [dm3] 3L_14937331_SNP [dm6]	G	T	1.045e^-4	0.575	INTRON DCX-EMAP
2L	13337374	2L_13337374_SNP [dm3] 2L_13337374_SNP [dm6]	G	A	1.054e^-4	0.576	INTERGENIC
2L	20146910	2L_20146910_SNP [dm3] 2L_20146910_SNP [dm6]	T	C	1.057e^-4	0.576	INTERGENIC
2R	18402752	2R_18402752_SNP [dm3] 2R_22515247_SNP [dm6]	G	C	1.063e^-4	0.576	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	8183255	X_8183255_SNP [dm3] X_8289222_SNP [dm6]	T	G	1.064e^-4	0.576	INTRON nAChRalpha3
3L	612152	3L_612152_SNP [dm3] 3L_612152_SNP [dm6]	T	C	1.066e^-4	0.576	INTERGENIC
3R	19030436	3R_19030436_SNP [dm3] 3R_23204714_SNP [dm6]	T	C	1.066e^-4	0.576	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
2R	16583176	2R_16583176_SNP [dm3] 2R_20695671_SNP [dm6]	G	A	1.074e^-4	0.577	INTERGENIC
2L	3615650	2L_3615650_SNP [dm3] 2L_3615650_SNP [dm6]	A	T	1.074e^-4	0.577	UPSTREAM CR44310 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15464535	3R_15464535_SNP [dm3] 3R_19638813_SNP [dm6]	T	G	1.077e^-4	0.577	INTRON subdued
3L	1004156	3L_1004156_SNP [dm3] 3L_1004156_SNP [dm6]	T	C	1.080e^-4	0.577	INTRON trio
3L	8655620	3L_8655620_SNP [dm3] 3L_8662520_SNP [dm6]	G	T	1.083e^-4	0.577	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17392613	2R_17392613_DEL [dm3] 2R_21505108_DEL [dm6]	ACATA	A	1.090e^-4	0.578	INTRON MESK2
3L	4403242	3L_4403242_SNP [dm3] 3L_4403242_SNP [dm6]	A	T	1.097e^-4	0.578	UPSTREAM Syx17 DOWNSTREAM slow INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	19767885	2L_19767885_SNP [dm3] 2L_19767885_SNP [dm6]	G	T	1.097e^-4	0.578	SYNONYMOUS_CODING bsh	TF binding site mE1_TFBS_cad
3R	12716140	3R_12716140_SNP [dm3] 3R_16890418_SNP [dm6]	T	C	1.100e^-4	0.578	INTRON iab-8	TF binding site mE1_TFBS_cad
X	14357749	X_14357749_INS [dm3] X_14463716_INS [dm6]	A	AGCTGGTGCGA...	1.104e^-4	0.578	INTERGENIC
3L	4403211	3L_4403211_SNP [dm3] 3L_4403211_SNP [dm6]	G	T	1.104e^-4	0.578	UPSTREAM Syx17 DOWNSTREAM slow INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	13020708	3L_13020708_SNP [dm3] 3L_13027608_SNP [dm6]	G	C	1.115e^-4	0.58	DOWNSTREAM CR45172 INTERGENIC
2R	4357195	2R_4357195_SNP [dm3] 2R_8469690_SNP [dm6]	G	C	1.117e^-4	0.58	INTRON Mal-A7
3L	18833811	3L_18833811_INS [dm3] 3L_18840711_INS [dm6]	A	AG	1.118e^-4	0.58	UPSTREAM Indy & 1 other INTRON Indy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	16764353	2R_16764353_SNP [dm3] 2R_20876848_SNP [dm6]	G	C	1.120e^-4	0.58	INTRON Ipk1
2L	20353297	2L_20353297_SNP [dm3] 2L_20353297_SNP [dm6]	C	T	1.124e^-4	0.581	UPSTREAM snoRNA:Me28S-A3365 & 1 other INTRON RtGEF
X	11049303	X_11049303_SNP [dm3] X_11155270_SNP [dm6]	A	C	1.134e^-4	0.582	INTRON Dlic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16752038	3L_16752038_SNP [dm3] 3L_16758938_SNP [dm6]	C	T	1.144e^-4	0.582	INTERGENIC
2L	13768165	2L_13768165_SNP [dm3] 2L_13768165_SNP [dm6]	T	A	1.144e^-4	0.582	INTRON TM9SF4
X	19386612	X_19386612_SNP [dm3] X_19492579_SNP [dm6]	C	T	1.158e^-4	0.582	SYNONYMOUS_CODING CG12203 UPSTREAM pcm DOWNSTREAM CG12204	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19624544	2R_19624544_SNP [dm3] 2R_23737021_SNP [dm6]	A	G	1.159e^-4	0.582	SYNONYMOUS_CODING egl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3487249	2L_3487249_SNP [dm3] 2L_3487249_SNP [dm6]	G	A	1.159e^-4	0.582	INTRON CG15414
2R	7181532	2R_7181532_SNP [dm3] 2R_11294027_SNP [dm6]	T	G	1.165e^-4	0.582	NON_SYNONYMOUS_CODING CG18336 UPSTREAM dare DOWNSTREAM CG30033 & 1 other	TF binding site mE1_TFBS_cad
3R	13660862	3R_13660862_INS [dm3] 3R_17835140_INS [dm6]	T	TAGGT	1.165e^-4	0.582	INTRON tinc
2L	20290293	2L_20290293_SNP [dm3] 2L_20290293_SNP [dm6]	G	A	1.168e^-4	0.582	INTERGENIC
2L	9355168	2L_9355168_SNP [dm3] 2L_9355168_SNP [dm6]	A	T	1.170e^-4	0.582	INTERGENIC
3R	25093355	3R_25093355_SNP [dm3] 3R_29267633_SNP [dm6]	G	T	1.174e^-4	0.582	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	10633025	2R_10633025_SNP [dm3] 2R_14745520_SNP [dm6]	C	T	1.178e^-4	0.582	UPSTREAM Dro & 1 other INTERGENIC
3L	7004268	3L_7004268_SNP [dm3] 3L_7011168_SNP [dm6]	A	G	1.180e^-4	0.582	INTRON Mp
3L	10915191	3L_10915191_SNP [dm3] 3L_10922091_SNP [dm6]	A	G	1.191e^-4	0.582	INTERGENIC
2L	3644780	2L_3644780_SNP [dm3] 2L_3644780_SNP [dm6]	C	T	1.191e^-4	0.582	INTRON for
3L	13220225	3L_13220225_SNP [dm3] 3L_13227125_SNP [dm6]	T	A	1.194e^-4	0.582	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3L	612011	3L_612011_SNP [dm3] 3L_612011_SNP [dm6]	T	G	1.195e^-4	0.582	INTERGENIC
X	16661262	X_16661262_SNP [dm3] X_16767229_SNP [dm6]	C	G	1.198e^-4	0.582	INTRON if
X	2145214	X_2145214_SNP [dm3] X_2251181_SNP [dm6]	A	G	1.204e^-4	0.582	INTRON CG3191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	25822032	3R_25822032_SNP [dm3] 3R_29996310_SNP [dm6]	C	T	1.205e^-4	0.582	SYNONYMOUS_CODING Sas-6 DOWNSTREAM CG15525	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2559636	2L_2559636_SNP [dm3] 2L_2559636_SNP [dm6]	C	T	1.222e^-4	0.582	INTERGENIC
3R	26256533	3R_26256533_DEL [dm3] 3R_30430811_DEL [dm6]	AATATCATCTGAAGAATATC...	A	1.222e^-4	0.582	INTRON CG15533	TF binding site mE1_TFBS_cad
2R	9625837	2R_9625837_SNP [dm3] 2R_13738332_SNP [dm6]	G	A	1.224e^-4	0.582	INTRON fas
3L	10556410	3L_10556410_SNP [dm3] 3L_10563310_SNP [dm6]	A	C	1.227e^-4	0.582	INTRON A2bp1
2R	10470803	2R_10470803_INS [dm3] 2R_14583298_INS [dm6]	C	CC	1.228e^-4	0.582	SPLICE_SITE_REGION ttv INTRON ttv	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14338537	3R_14338537_SNP [dm3] 3R_18512815_SNP [dm6]	A	C	1.230e^-4	0.582	INTRON fru
3R	7376757	3R_7376757_SNP [dm3] 3R_11551035_SNP [dm6]	C	T	1.237e^-4	0.582	INTERGENIC	TF binding site mE1_TFBS_inv
2R	5295144	2R_5295144_SNP [dm3] 2R_9407639_SNP [dm6]	A	T	1.239e^-4	0.582	INTRON wun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	1343266	2R_1343266_SNP [dm3] 2R_5455761_SNP [dm6]	T	G	1.240e^-4	0.582	UTR_3_PRIME laccase2
X	4617919	X_4617919_SNP [dm3] X_4723886_SNP [dm6]	A	C	1.241e^-4	0.582	INTRON Proc-R
2L	20252524	2L_20252524_SNP [dm3] 2L_20252524_SNP [dm6]	A	G	1.242e^-4	0.582	INTERGENIC
X	16934242	X_16934242_SNP [dm3] X_17040209_SNP [dm6]	A	C	1.245e^-4	0.582	INTRON CG45002
3R	17225096	3R_17225096_SNP [dm3] 3R_21399374_SNP [dm6]	T	C	1.246e^-4	0.582	SPLICE_SITE_REGION CG6475 INTRON CG6475	TF binding site mE1_TFBS_sens
2R	7754372	2R_7754372_SNP [dm3] 2R_11866867_SNP [dm6]	G	C	1.250e^-4	0.582	UPSTREAM CR42532 & 1 other INTERGENIC
2R	11649434	2R_11649434_INS [dm3] 2R_15761929_INS [dm6]	A	AA	1.252e^-4	0.582	UTR_3_PRIME CG30089 DOWNSTREAM CG30089 & 1 other	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	7754073	2R_7754073_SNP [dm3] 2R_11866568_SNP [dm6]	A	G	1.254e^-4	0.582	UPSTREAM CR42532 & 1 other INTERGENIC
2L	20437146	2L_20437146_SNP [dm3] 2L_20437146_SNP [dm6]	G	A	1.254e^-4	0.582	DOWNSTREAM CR43607 INTRON CG31688	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16981500	3R_16981500_DEL [dm3] 3R_21155778_DEL [dm6]	TGTACAT	T	1.256e^-4	0.582	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	9629187	2R_9629187_SNP [dm3] 2R_13741682_SNP [dm6]	G	A	1.259e^-4	0.582	INTRON fas
2L	20247219	2L_20247219_SNP [dm3] 2L_20247219_SNP [dm6]	T	A	1.259e^-4	0.582	UPSTREAM CR40341 INTERGENIC
2R	18976519	2R_18976519_SNP [dm3] 2R_23088996_SNP [dm6]	C	T	1.260e^-4	0.582	DOWNSTREAM CG13538 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	19765658	2L_19765658_SNP [dm3] 2L_19765658_SNP [dm6]	T	A	1.260e^-4	0.582	DOWNSTREAM bsh INTERGENIC	TF binding site mE1_TFBS_Trl
X	13259656	X_13259656_SNP [dm3] X_13365623_SNP [dm6]	C	T	1.265e^-4	0.582	SYNONYMOUS_CODING Syt12	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10654906	3R_10654906_SNP [dm3] 3R_14829184_SNP [dm6]	T	C	1.270e^-4	0.582	INTRON btsz
3R	25827535	3R_25827535_SNP [dm3] 3R_30001813_SNP [dm6]	T	A	1.270e^-4	0.582	INTRON Tace	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20261736	2L_20261736_SNP [dm3] 2L_20261736_SNP [dm6]	T	G	1.274e^-4	0.582	INTERGENIC
2L	11884113	2L_11884113_SNP [dm3] 2L_11884113_SNP [dm6]	T	G	1.277e^-4	0.582	INTRON Pde1c
2L	10817647	2L_10817647_SNP [dm3] 2L_10817647_SNP [dm6]	A	T	1.277e^-4	0.582	INTRON Nos
2R	8589320	2R_8589320_SNP [dm3] 2R_12701815_SNP [dm6]	A	G	1.277e^-4	0.582	DOWNSTREAM wuc INTERGENIC
3R	17234082	3R_17234082_SNP [dm3] 3R_21408360_SNP [dm6]	G	C	1.288e^-4	0.584	UPSTREAM CheB93b DOWNSTREAM CheB93a INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	24817518	3R_24817518_SNP [dm3] 3R_28991796_SNP [dm6]	T	A	1.289e^-4	0.584	INTERGENIC
3L	10289430	3L_10289430_SNP [dm3] 3L_10296330_SNP [dm6]	T	C	1.292e^-4	0.584	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11840608	X_11840608_SNP [dm3] X_11946575_SNP [dm6]	A	C	1.296e^-4	0.584	INTRON cac
2R	18553570	2R_18553570_SNP [dm3] 2R_22666065_SNP [dm6]	G	A	1.300e^-4	0.584	UTR_3_PRIME CG42867 UPSTREAM CR42868 DOWNSTREAM CR45269
2L	3960310	2L_3960310_DEL [dm3] 2L_3960310_DEL [dm6]	TTATT	T	1.301e^-4	0.584	INTRON fred
3L	4072524	3L_4072524_SNP [dm3] 3L_4072524_SNP [dm6]	A	G	1.308e^-4	0.585	SYNONYMOUS_CODING Faa UPSTREAM wit	TF binding site mE1_TFBS_Trl
2R	14428864	2R_14428864_SNP [dm3] 2R_18541359_SNP [dm6]	G	A	1.311e^-4	0.586	INTRON Rgk2
2L	3615652	2L_3615652_SNP [dm3] 2L_3615652_SNP [dm6]	C	T	1.315e^-4	0.586	UPSTREAM CR44310 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5927873	3L_5927873_SNP [dm3] 3L_5934773_SNP [dm6]	G	T	1.323e^-4	0.587	INTRON CG33993
2R	19455204	2R_19455204_SNP [dm3] 2R_23567681_SNP [dm6]	C	A	1.323e^-4	0.587	UPSTREAM apt INTRON apt
4	1010795	4_1010795_SNP [dm3] 4_990169_SNP [dm6]	T	C	1.331e^-4	0.589	UTR_5_PRIME toy	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19194743	3L_19194743_INS [dm3] 3L_19201643_INS [dm6]	A	AT	1.341e^-4	0.59	INTRON fz2
3L	17394270	3L_17394270_INS [dm3] 3L_17401170_INS [dm6]	G	GTG	1.344e^-4	0.59	FRAME_SHIFT noe INTRON blot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	5781185	3L_5781185_SNP [dm3] 3L_5788085_SNP [dm6]	T	A	1.346e^-4	0.59	INTERGENIC
3R	19155971	3R_19155971_DEL [dm3] 3R_23330249_DEL [dm6]	AC	A	1.347e^-4	0.59	INTRON pnt
3R	13316533	3R_13316533_SNP [dm3] 3R_17490811_SNP [dm6]	T	G	1.356e^-4	0.591	INTRON Dscam3
2L	1863207	2L_1863207_SNP [dm3] 2L_1863207_SNP [dm6]	C	G	1.359e^-4	0.591	INTRON CG31663
3R	24452910	3R_24452910_SNP [dm3] 3R_28627188_SNP [dm6]	C	T	1.360e^-4	0.591	INTRON CG10011
3R	23952513	3R_23952513_SNP [dm3] 3R_28126791_SNP [dm6]	C	T	1.365e^-4	0.591	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	20259688	2L_20259688_DEL [dm3] 2L_20259688_DEL [dm6]	TGT	T	1.365e^-4	0.591	INTERGENIC
3R	9449043	3R_9449043_SNP [dm3] 3R_13623321_SNP [dm6]	G	A	1.368e^-4	0.591	INTERGENIC
2R	13359567	2R_13359567_SNP [dm3] 2R_17472062_SNP [dm6]	A	G	1.372e^-4	0.591	SYNONYMOUS_CODING qkr54B
3R	16295359	3R_16295359_INS [dm3] 3R_20469637_INS [dm6]	A	CACTT	1.374e^-4	0.591	INTRON Gfrl
2L	3859580	2L_3859580_SNP [dm3] 2L_3859580_SNP [dm6]	A	T	1.376e^-4	0.591	INTERGENIC
2R	4693268	2R_4693268_SNP [dm3] 2R_8805763_SNP [dm6]	T	G	1.383e^-4	0.592	INTRON sns
X	2310627	X_2310627_SNP [dm3] X_2416594_SNP [dm6]	T	C	1.391e^-4	0.593	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_sens
2R	19832875	2R_19832875_SNP [dm3] 2R_23945352_SNP [dm6]	A	G	1.394e^-4	0.593	INTRON Galphas	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6093889	3L_6093889_SNP [dm3] 3L_6100789_SNP [dm6]	T	A	1.395e^-4	0.593	INTRON Ets65A
2L	19896808	2L_19896808_SNP [dm3] 2L_19896808_SNP [dm6]	C	T	1.399e^-4	0.593	INTRON sick
3R	26969625	3R_26969625_SNP [dm3] 3R_31143903_SNP [dm6]	A	G	1.401e^-4	0.593	INTRON Gycbeta100B
2L	20421603	2L_20421603_SNP [dm3] 2L_20421603_SNP [dm6]	G	T	1.407e^-4	0.593	UPSTREAM snoRNA:Psi18S-525i & 2 others DOWNSTREAM snoRNA:Psi18S-640e & 2 others INTRON Arpc2
3L	14317177	3L_14317177_SNP [dm3] 3L_14324077_SNP [dm6]	A	C	1.412e^-4	0.593	INTRON fz & 1 other
2L	13142509	2L_13142509_SNP [dm3] 2L_13142509_SNP [dm6]	C	A	1.415e^-4	0.593	UTR_3_PRIME CG9928 DOWNSTREAM CG16978
X	3927745	X_3927745_SNP [dm3] X_4033712_SNP [dm6]	A	G	1.416e^-4	0.593	INTERGENIC
3L	5220180	3L_5220180_SNP [dm3] 3L_5227080_SNP [dm6]	G	A	1.419e^-4	0.593	INTRON shep
3R	26470032	3R_26470032_SNP [dm3] 3R_30644310_SNP [dm6]	A	T	1.420e^-4	0.593	SYNONYMOUS_CODING CG31013
2L	20293934	2L_20293934_SNP [dm3] 2L_20293934_SNP [dm6]	T	C	1.424e^-4	0.593	UPSTREAM CG12617 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	2627831	3R_2627831_SNP [dm3] 3R_6802109_SNP [dm6]	G	A	1.429e^-4	0.593	UTR_3_PRIME Dfd	TF binding site BDTNP1_TFBS_dl
3L	13220164	3L_13220164_SNP [dm3] 3L_13227064_SNP [dm6]	A	G	1.430e^-4	0.593	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3R	17066909	3R_17066909_SNP [dm3] 3R_21241187_SNP [dm6]	G	A	1.444e^-4	0.596	INTERGENIC	regulatory region REDfly_CRMs
3R	22797259	3R_22797259_SNP [dm3] 3R_26971537_SNP [dm6]	C	G	1.444e^-4	0.596	SYNONYMOUS_CODING CG5521	TF binding site mE1_TFBS_cad
3L	13220174	3L_13220174_SNP [dm3] 3L_13227074_SNP [dm6]	T	C	1.451e^-4	0.596	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2R	16764348	2R_16764348_SNP [dm3] 2R_20876843_SNP [dm6]	T	C	1.452e^-4	0.596	INTRON Ipk1
3L	3633899	3L_3633899_DEL [dm3] 3L_3633899_DEL [dm6]	TCTTGGA	T	1.453e^-4	0.596	INTRON dar1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	15842494	3L_15842494_SNP [dm3] 3L_15849394_SNP [dm6]	A	G	1.463e^-4	0.596	UTR_3_PRIME pHCl	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	20125683	2L_20125683_SNP [dm3] 2L_20125683_SNP [dm6]	C	T	1.466e^-4	0.596	INTERGENIC
2R	4849002	2R_4849002_SNP [dm3] 2R_8961497_SNP [dm6]	T	C	1.466e^-4	0.596	UTR_3_PRIME babo
3R	10062129	3R_10062129_SNP [dm3] 3R_14236407_SNP [dm6]	T	C	1.466e^-4	0.596	DOWNSTREAM CG43291 INTERGENIC
3R	13649897	3R_13649897_SNP [dm3] 3R_17824175_SNP [dm6]	A	G	1.468e^-4	0.596	INTRON tinc
3L	14511687	3L_14511687_SNP [dm3] 3L_14518587_SNP [dm6]	C	A	1.472e^-4	0.596	DOWNSTREAM CG9592 INTRON bbg
2L	13875961	2L_13875961_SNP [dm3] 2L_13875961_SNP [dm6]	T	C	1.478e^-4	0.597	INTRON CenG1A
2R	19450566	2R_19450566_SNP [dm3] 2R_23563043_SNP [dm6]	A	T	1.488e^-4	0.597	SYNONYMOUS_CODING Pi3K59F UPSTREAM CG30184	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	612005	3L_612005_SNP [dm3] 3L_612005_SNP [dm6]	C	G	1.493e^-4	0.597	INTERGENIC
2R	4243033	2R_4243033_SNP [dm3] 2R_8355528_SNP [dm6]	C	A	1.495e^-4	0.597	INTRON pdm3
3R	13801998	3R_13801998_SNP [dm3] 3R_17976276_SNP [dm6]	T	C	1.496e^-4	0.597	INTRON cpo
2R	4765438	2R_4765438_SNP [dm3] 2R_8877933_SNP [dm6]	T	C	1.500e^-4	0.597	INTRON RyR	TF binding site mE1_TFBS_HSA
3R	23824654	3R_23824654_SNP [dm3] 3R_27998932_SNP [dm6]	A	G	1.501e^-4	0.597	INTERGENIC
2L	13627834	2L_13627834_SNP [dm3] 2L_13627834_SNP [dm6]	T	C	1.503e^-4	0.597	INTRON kuz
2R	16764360	2R_16764360_SNP [dm3] 2R_20876855_SNP [dm6]	C	A	1.508e^-4	0.597	INTRON Ipk1
2R	7695203	2R_7695203_SNP [dm3] 2R_11807698_SNP [dm6]	G	A	1.510e^-4	0.597	INTRON ths
3L	6395490	3L_6395490_DEL [dm3] 3L_6402390_DEL [dm6]	TA	T	1.513e^-4	0.597	INTRON CG42747
2L	11884016	2L_11884016_DEL [dm3] 2L_11884016_DEL [dm6]	TGCAACTATACACT...	T	1.514e^-4	0.597	INTRON Pde1c
3L	14511671	3L_14511671_SNP [dm3] 3L_14518571_SNP [dm6]	A	T	1.515e^-4	0.597	DOWNSTREAM CG9592 INTRON bbg
X	5866252	X_5866252_SNP [dm3] X_5972219_SNP [dm6]	A	T	1.526e^-4	0.597	INTRON Grip
X	8625704	X_8625704_INS [dm3] X_8731671_INS [dm6]	A	AA	1.527e^-4	0.597	INTERGENIC
2R	12693526	2R_12693526_SNP [dm3] 2R_16806021_SNP [dm6]	G	T	1.528e^-4	0.597	INTERGENIC
3R	12037769	3R_12037769_SNP [dm3] 3R_16212047_SNP [dm6]	G	T	1.528e^-4	0.597	INTERGENIC
2L	14252724	2L_14252724_SNP [dm3] 2L_14252724_SNP [dm6]	A	C	1.536e^-4	0.599	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	5917903	3L_5917903_SNP [dm3] 3L_5924803_SNP [dm6]	T	A	1.539e^-4	0.599	INTRON Vap-33B
3R	13649896	3R_13649896_SNP [dm3] 3R_17824174_SNP [dm6]	T	G	1.551e^-4	0.599	INTRON tinc
3L	13778361	3L_13778361_SNP [dm3] 3L_13785261_SNP [dm6]	G	A	1.554e^-4	0.599	INTRON bru-3
3R	10157800	3R_10157800_SNP [dm3] 3R_14332078_SNP [dm6]	C	G	1.556e^-4	0.599	INTRON NK7.1
3R	16295350	3R_16295350_SNP [dm3] 3R_20469628_SNP [dm6]	G	A	1.557e^-4	0.599	INTRON Gfrl
3R	17066804	3R_17066804_DEL [dm3] 3R_21241082_DEL [dm6]	ATAAAATGAATGAATGATAA...	A	1.567e^-4	0.599	INTERGENIC	regulatory region REDfly_CRMs
2R	6746057	2R_6746057_SNP [dm3] 2R_10858552_SNP [dm6]	G	T	1.578e^-4	0.599	INTRON CG30015
2L	16550746	2L_16550746_SNP [dm3] 2L_16550746_SNP [dm6]	A	T	1.581e^-4	0.599	UPSTREAM CG5968 INTRON CG42389
3L	2993748	3L_2993748_SNP [dm3] 3L_2993748_SNP [dm6]	C	T	1.581e^-4	0.599	INTERGENIC
3R	23570090	3R_23570090_SNP [dm3] 3R_27744368_SNP [dm6]	C	T	1.583e^-4	0.599	SYNONYMOUS_CODING Ets98B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23824602	3R_23824602_SNP [dm3] 3R_27998880_SNP [dm6]	A	C	1.591e^-4	0.599	INTERGENIC
X	12820227	X_12820227_SNP [dm3] X_12926194_SNP [dm6]	T	G	1.594e^-4	0.599	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	7803619	3L_7803619_DEL [dm3] 3L_7810519_DEL [dm6]	ATA	A	1.598e^-4	0.599	UPSTREAM CG32369 DOWNSTREAM Pdp1 INTERGENIC
2R	12693155	2R_12693155_SNP [dm3] 2R_16805650_SNP [dm6]	T	A	1.609e^-4	0.599	INTERGENIC
2R	20718863	2R_20718863_SNP [dm3] 2R_24831340_SNP [dm6]	C	G	1.613e^-4	0.599	INTRON Dll	TF binding site mE1_TFBS_chinmo
2L	16399260	2L_16399260_DEL [dm3] 2L_16399260_DEL [dm6]	TT	T	1.614e^-4	0.599	DOWNSTREAM CG5888 INTERGENIC
3L	5521724	3L_5521724_SNP [dm3] 3L_5528624_SNP [dm6]	G	A	1.615e^-4	0.599	INTRON Lkr
2R	6563687	2R_6563687_SNP [dm3] 2R_10676182_SNP [dm6]	C	T	1.616e^-4	0.599	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	17204336	3L_17204336_DEL [dm3] 3L_17211236_DEL [dm6]	CCTGATTTC	C	1.619e^-4	0.599	INTRON Rbp6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6157707	2R_6157707_SNP [dm3] 2R_10270202_SNP [dm6]	G	A	1.622e^-4	0.599	DOWNSTREAM CG12910 INTRON CAP
X	10918144	X_10918144_SNP [dm3] X_11024111_SNP [dm6]	A	G	1.627e^-4	0.599	INTRON CG42339
2L	20437153	2L_20437153_SNP [dm3] 2L_20437153_SNP [dm6]	C	G	1.630e^-4	0.599	DOWNSTREAM CR43607 INTRON CG31688	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19117520	3R_19117520_SNP [dm3] 3R_23291798_SNP [dm6]	T	C	1.634e^-4	0.599	SYNONYMOUS_CODING pnt
2L	6607980	2L_6607980_SNP [dm3] 2L_6607980_SNP [dm6]	A	G	1.637e^-4	0.599	INTERGENIC
2L	6164513	2L_6164513_SNP [dm3] 2L_6164513_SNP [dm6]	T	C	1.642e^-4	0.599	INTERGENIC
3L	8167084	3L_8167084_SNP [dm3] 3L_8173984_SNP [dm6]	G	T	1.644e^-4	0.599	NON_SYNONYMOUS_CODING RecQ4	TF binding site mE1_TFBS_chinmo
2L	19896822	2L_19896822_SNP [dm3] 2L_19896822_SNP [dm6]	G	C	1.647e^-4	0.599	INTRON sick
2R	16584128	2R_16584128_SNP [dm3] 2R_20696623_SNP [dm6]	G	T	1.650e^-4	0.599	INTERGENIC
3R	17066770	3R_17066770_SNP [dm3] 3R_21241048_SNP [dm6]	G	A	1.651e^-4	0.599	INTERGENIC	regulatory region REDfly_CRMs
2L	20145317	2L_20145317_SNP [dm3] 2L_20145317_SNP [dm6]	C	T	1.654e^-4	0.599	INTERGENIC
2L	12336129	2L_12336129_SNP [dm3] 2L_12336129_SNP [dm6]	G	A	1.656e^-4	0.599	INTERGENIC
3L	4186754	3L_4186754_SNP [dm3] 3L_4186754_SNP [dm6]	T	C	1.656e^-4	0.599	SYNONYMOUS_CODING VhaM9.7-c INTRON CG18675 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24488141	3R_24488141_SNP [dm3] 3R_28662419_SNP [dm6]	G	T	1.659e^-4	0.599	INTERGENIC
2L	9640981	2L_9640981_SNP [dm3] 2L_9640981_SNP [dm6]	C	T	1.660e^-4	0.599	INTRON Apoltp
2R	12693528	2R_12693528_SNP [dm3] 2R_16806023_SNP [dm6]	C	A	1.665e^-4	0.599	INTERGENIC
3R	23536900	3R_23536900_SNP [dm3] 3R_27711178_SNP [dm6]	T	A	1.665e^-4	0.599	DOWNSTREAM CG12877 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25094381	3R_25094381_SNP [dm3] 3R_29268659_SNP [dm6]	G	A	1.666e^-4	0.599	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2910987	3L_2910987_SNP [dm3] 3L_2910987_SNP [dm6]	C	G	1.671e^-4	0.599	INTRON Shab
2R	11140654	2R_11140654_INS [dm3] 2R_15253149_INS [dm6]	T	TT	1.673e^-4	0.599	INTRON scb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	17662160	3R_17662160_SNP [dm3] 3R_21836438_SNP [dm6]	G	T	1.674e^-4	0.599	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	18479399	2L_18479399_SNP [dm3] 2L_18479399_SNP [dm6]	G	T	1.675e^-4	0.599	INTRON CG10283
2R	15542529	2R_15542529_SNP [dm3] 2R_19655024_SNP [dm6]	A	G	1.691e^-4	0.599	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20222915	2L_20222915_SNP [dm3] 2L_20222915_SNP [dm6]	A	G	1.694e^-4	0.599	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14236115	3R_14236115_SNP [dm3] 3R_18410393_SNP [dm6]	C	T	1.695e^-4	0.599	SYNONYMOUS_CODING CG10864 UPSTREAM CG31122 INTRON CG31122	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16429849	2L_16429849_SNP [dm3] 2L_16429849_SNP [dm6]	T	C	1.698e^-4	0.599	INTRON CG5888
2R	5002396	2R_5002396_SNP [dm3] 2R_9114891_SNP [dm6]	C	T	1.698e^-4	0.599	SYNONYMOUS_CODING Phax UPSTREAM Mys45A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	4888506	2R_4888506_SNP [dm3] 2R_9001001_SNP [dm6]	C	G	1.699e^-4	0.599	INTRON Np
2L	4986909	2L_4986909_SNP [dm3] 2L_4986909_SNP [dm6]	T	A	1.701e^-4	0.599	SYNONYMOUS_CODING CG34126	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16584131	2R_16584131_SNP [dm3] 2R_20696626_SNP [dm6]	T	A	1.702e^-4	0.599	INTERGENIC
2R	16584135	2R_16584135_INS [dm3] 2R_20696630_INS [dm6]	T	TACTTAGCTGAACT...	1.702e^-4	0.599	INTERGENIC
3L	14511686	3L_14511686_SNP [dm3] 3L_14518586_SNP [dm6]	C	T	1.704e^-4	0.599	DOWNSTREAM CG9592 INTRON bbg
3L	6093898	3L_6093898_SNP [dm3] 3L_6100798_SNP [dm6]	A	T	1.706e^-4	0.599	INTRON Ets65A
3L	7728910	3L_7728910_SNP [dm3] 3L_7735810_SNP [dm6]	A	T	1.708e^-4	0.599	INTRON CG32373 & 1 other
3R	14538466	3R_14538466_SNP [dm3] 3R_18712744_SNP [dm6]	G	A	1.710e^-4	0.599	UTR_5_PRIME VAChT INTRON Cha	TF binding site mE1_TFBS_Trl
2L	11776919	2L_11776919_SNP [dm3] 2L_11776919_SNP [dm6]	T	C	1.713e^-4	0.599	INTERGENIC
2L	4693090	2L_4693090_SNP [dm3] 2L_4693090_SNP [dm6]	C	T	1.715e^-4	0.599	INTERGENIC
2R	17681814	2R_17681814_DEL [dm3] 2R_21794309_DEL [dm6]	TT	T	1.719e^-4	0.599	INTERGENIC
2L	1924797	2L_1924797_SNP [dm3] 2L_1924797_SNP [dm6]	C	T	1.721e^-4	0.599	INTRON CG7337
2L	12337152	2L_12337152_SNP [dm3] 2L_12337152_SNP [dm6]	T	C	1.732e^-4	0.601	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	21742668	2L_21742668_SNP [dm3] 2L_21742668_SNP [dm6]	G	C	1.755e^-4	0.605	SYNONYMOUS_CODING step	TF binding site mE1_TFBS_cad
X	14820973	X_14820973_SNP [dm3] X_14926940_SNP [dm6]	T	C	1.756e^-4	0.605	DOWNSTREAM CG32591 INTRON Flo2
3L	10490610	3L_10490610_SNP [dm3] 3L_10497510_SNP [dm6]	A	G	1.756e^-4	0.605	INTRON A2bp1
2L	16399259	2L_16399259_SNP [dm3] 2L_16399259_SNP [dm6]	T	G	1.758e^-4	0.605	DOWNSTREAM CG5888 INTERGENIC
2R	14270930	2R_14270930_SNP [dm3] 2R_18383425_SNP [dm6]	A	T	1.762e^-4	0.605	UPSTREAM IM1 & 1 other INTERGENIC
2L	20137590	2L_20137590_SNP [dm3] 2L_20137590_SNP [dm6]	T	C	1.762e^-4	0.605	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9240805	X_9240805_SNP [dm3] X_9346772_SNP [dm6]	C	G	1.766e^-4	0.606	INTRON CG34449
2L	20393398	2L_20393398_SNP [dm3] 2L_20393398_SNP [dm6]	A	T	1.770e^-4	0.606	INTRON CG10947
X	4617935	X_4617935_SNP [dm3] X_4723902_SNP [dm6]	A	G	1.777e^-4	0.607	INTRON Proc-R
3R	10236096	3R_10236096_SNP [dm3] 3R_14410374_SNP [dm6]	G	A	1.784e^-4	0.607	SYNONYMOUS_CODING cv-c	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	11263435	X_11263435_SNP [dm3] X_11369402_SNP [dm6]	C	T	1.784e^-4	0.607	UPSTREAM dlg1 DOWNSTREAM Tim8 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	17955957	X_17955957_SNP [dm3] X_18061924_SNP [dm6]	A	G	1.786e^-4	0.607	INTRON Sh	TF binding site BDTNP1_TFBS_twi
3R	22832029	3R_22832029_SNP [dm3] 3R_27006307_SNP [dm6]	G	A	1.790e^-4	0.607	SYNONYMOUS_CODING CG6295 UPSTREAM CG6296 INTRON RYa-R	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12581353	2L_12581353_SNP [dm3] 2L_12581353_SNP [dm6]	G	A	1.795e^-4	0.607	UPSTREAM CR44596 INTERGENIC
2R	20183461	2R_20183461_SNP [dm3] 2R_24295938_SNP [dm6]	C	A	1.798e^-4	0.607	SYNONYMOUS_CODING CG3394	TF binding site mE1_TFBS_chinmo
2L	20255169	2L_20255169_SNP [dm3] 2L_20255169_SNP [dm6]	A	T	1.798e^-4	0.607	UPSTREAM CR40465 DOWNSTREAM CG17571 INTERGENIC
3L	1392261	3L_1392261_DEL [dm3] 3L_1392261_DEL [dm6]	CC	A	1.810e^-4	0.61	INTRON Ptp61F	TF binding site mE1_TFBS_cad
2L	6588153	2L_6588153_SNP [dm3] 2L_6588153_SNP [dm6]	C	T	1.817e^-4	0.61	INTRON CG11319
4	995850	4_995850_SNP [dm3] 4_975224_SNP [dm6]	A	T	1.827e^-4	0.61	UTR_5_PRIME fuss INTRON fuss EXON sphinx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7629777	3L_7629777_SNP [dm3] 3L_7636677_SNP [dm6]	C	G	1.829e^-4	0.61	NON_SYNONYMOUS_CODING CG33275	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16584125	2R_16584125_SNP [dm3] 2R_20696620_SNP [dm6]	G	A	1.833e^-4	0.61	INTERGENIC
2L	10380928	2L_10380928_SNP [dm3] 2L_10380928_SNP [dm6]	C	T	1.838e^-4	0.61	SYNONYMOUS_CODING gny	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4758550	3L_4758550_SNP [dm3] 3L_4758550_SNP [dm6]	G	A	1.839e^-4	0.61	UTR_3_PRIME CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	2961085	3L_2961085_SNP [dm3] 3L_2961085_SNP [dm6]	G	A	1.840e^-4	0.61	UPSTREAM Or63a & 1 other INTERGENIC
3R	21221268	3R_21221268_SNP [dm3] 3R_25395546_SNP [dm6]	C	G	1.843e^-4	0.61	INTRON Fur1
3R	26197628	3R_26197628_SNP [dm3] 3R_30371906_SNP [dm6]	A	G	1.845e^-4	0.61	UTR_3_PRIME hdc
2L	15393222	2L_15393222_SNP [dm3] 2L_15393222_SNP [dm6]	T	A	1.848e^-4	0.61	INTERGENIC
2L	20355222	2L_20355222_SNP [dm3] 2L_20355222_SNP [dm6]	G	A	1.851e^-4	0.61	INTRON RtGEF	TF binding site mE1_TFBS_cad
X	8080551	X_8080551_DEL [dm3] X_8186518_DEL [dm6]	AGTTTA	A	1.852e^-4	0.61	INTRON sdt
3R	24817419	3R_24817419_SNP [dm3] 3R_28991697_SNP [dm6]	A	G	1.854e^-4	0.61	INTERGENIC
3R	13660865	3R_13660865_SNP [dm3] 3R_17835143_SNP [dm6]	A	G	1.859e^-4	0.61	INTRON tinc
3L	13933597	3L_13933597_SNP [dm3] 3L_13940497_SNP [dm6]	A	C	1.864e^-4	0.61	INTRON CG32137	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8820587	2R_8820587_SNP [dm3] 2R_12933082_SNP [dm6]	G	T	1.869e^-4	0.61	SYNONYMOUS_CODING CG17019	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10111931	2L_10111931_SNP [dm3] 2L_10111931_SNP [dm6]	C	A	1.873e^-4	0.61	INTRON CG44153 & 1 other
2L	12581284	2L_12581284_SNP [dm3] 2L_12581284_SNP [dm6]	A	G	1.874e^-4	0.61	UPSTREAM CR44596 INTERGENIC
2R	9842010	2R_9842010_SNP [dm3] 2R_13954505_SNP [dm6]	T	C	1.875e^-4	0.61	UTR_5_PRIME CG33155 UPSTREAM AGO1 INTRON AGO1 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3R	10823207	3R_10823207_SNP [dm3] 3R_14997485_SNP [dm6]	C	T	1.878e^-4	0.61	INTERGENIC
2L	1864792	2L_1864792_SNP [dm3] 2L_1864792_SNP [dm6]	G	A	1.880e^-4	0.61	INTRON CG31663
2L	9175912	2L_9175912_SNP [dm3] 2L_9175912_SNP [dm6]	T	A	1.883e^-4	0.61	UPSTREAM tai INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	2434431	2R_2434431_INS [dm3] 2R_6546926_INS [dm6]	T	TATGTATGTATAT...	1.901e^-4	0.614	INTRON jing	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	11038552	X_11038552_SNP [dm3] X_11144519_SNP [dm6]	T	C	1.903e^-4	0.614	DOWNSTREAM CG15202 & 1 other INTRON CG15201	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17204290	3L_17204290_SNP [dm3] 3L_17211190_SNP [dm6]	A	T	1.911e^-4	0.616	INTRON Rbp6	TF binding site BDTNP1_TFBS_dl
2R	9611291	2R_9611291_SNP [dm3] 2R_13723786_SNP [dm6]	G	A	1.921e^-4	0.616	INTRON fas
2R	9755850	2R_9755850_SNP [dm3] 2R_13868345_SNP [dm6]	T	C	1.924e^-4	0.616	SYNONYMOUS_CODING shot INTRON shot
2R	7371239	2R_7371239_SNP [dm3] 2R_11483734_SNP [dm6]	A	G	1.929e^-4	0.616	INTRON inv
3R	7375413	3R_7375413_SNP [dm3] 3R_11549691_SNP [dm6]	T	A	1.929e^-4	0.616	INTERGENIC
2L	19799973	2L_19799973_SNP [dm3] 2L_19799973_SNP [dm6]	G	A	1.931e^-4	0.616	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	4953213	2R_4953213_SNP [dm3] 2R_9065708_SNP [dm6]	G	A	1.934e^-4	0.616	INTRON ana	regulatory region REDfly_CRMs
X	16038415	X_16038415_SNP [dm3] X_16144382_SNP [dm6]	G	T	1.934e^-4	0.616	INTRON disco-r
2L	20249640	2L_20249640_SNP [dm3] 2L_20249640_SNP [dm6]	G	T	1.941e^-4	0.617	DOWNSTREAM CR40341 EXON CR40172
2R	5181978	2R_5181978_SNP [dm3] 2R_9294473_SNP [dm6]	T	A	1.945e^-4	0.617	UPSTREAM Drep-2 INTRON Drep-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	12169853	X_12169853_SNP [dm3] X_12275820_SNP [dm6]	G	A	1.950e^-4	0.618	DOWNSTREAM CG45603 INTRON Ten-a
2R	7181632	2R_7181632_SNP [dm3] 2R_11294127_SNP [dm6]	A	G	1.953e^-4	0.618	SYNONYMOUS_CODING CG18336 UPSTREAM dare DOWNSTREAM CG30033 & 1 other	TF binding site mE1_TFBS_cad
2R	4716939	2R_4716939_SNP [dm3] 2R_8829434_SNP [dm6]	G	A	1.965e^-4	0.62	INTRON sns	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10346545	2R_10346545_SNP [dm3] 2R_14459040_SNP [dm6]	T	A	1.974e^-4	0.62	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	2627816	3R_2627816_SNP [dm3] 3R_6802094_SNP [dm6]	A	G	1.976e^-4	0.62	UTR_3_PRIME Dfd	TF binding site BDTNP1_TFBS_dl
3L	10556869	3L_10556869_SNP [dm3] 3L_10563769_SNP [dm6]	G	A	1.977e^-4	0.62	INTRON A2bp1
3R	18128927	3R_18128927_SNP [dm3] 3R_22303205_SNP [dm6]	T	A	1.978e^-4	0.62	INTRON CG7084
2R	9531331	2R_9531331_SNP [dm3] 2R_13643826_SNP [dm6]	G	A	1.981e^-4	0.62	SPLICE_SITE_REGION fas INTRON fas
X	12048677	X_12048677_INS [dm3] X_12154644_INS [dm6]	T	TGCTGCTGCTGCTAGTGATT...	1.988e^-4	0.621	INTRON Ten-a
2L	13738483	2L_13738483_SNP [dm3] 2L_13738483_SNP [dm6]	C	T	2.002e^-4	0.623	INTERGENIC
2R	9444901	2R_9444901_SNP [dm3] 2R_13557396_SNP [dm6]	T	G	2.005e^-4	0.623	DOWNSTREAM snoRNA:Psi28S-1153 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	4878312	3L_4878312_SNP [dm3] 3L_4878312_SNP [dm6]	C	T	2.008e^-4	0.623	INTRON CG17150
3R	25167468	3R_25167468_SNP [dm3] 3R_29341746_SNP [dm6]	G	A	2.009e^-4	0.623	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	19674680	3R_19674680_SNP [dm3] 3R_23848958_SNP [dm6]	T	A	2.013e^-4	0.623	SPLICE_SITE_REGION CG34355 INTRON CG34355
2L	7159522	2L_7159522_SNP [dm3] 2L_7159522_SNP [dm6]	G	T	2.015e^-4	0.623	INTERGENIC
X	10061078	X_10061078_SNP [dm3] X_10167045_SNP [dm6]	G	C	2.016e^-4	0.623	INTRON CR44894 & 1 other
2L	20480753	2L_20480753_SNP [dm3] 2L_20480753_SNP [dm6]	G	T	2.024e^-4	0.624	INTRON CR44980	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	20135326	2L_20135326_DEL [dm3] 2L_20135326_DEL [dm6]	TCTGCTT	T	2.025e^-4	0.624	UPSTREAM CG10651 INTERGENIC
3R	26319257	3R_26319257_SNP [dm3] 3R_30493535_SNP [dm6]	G	A	2.031e^-4	0.625	INTRON PH4alphaMP
2R	19536496	2R_19536496_SNP [dm3] 2R_23648973_SNP [dm6]	T	A	2.041e^-4	0.627	INTRON retn	TF binding site BDTNP1_TFBS_dl
X	21303533	X_21303533_SNP [dm3] X_21432506_SNP [dm6]	T	A	2.057e^-4	0.627	INTRON CG42343
X	17956069	X_17956069_SNP [dm3] X_18062036_SNP [dm6]	T	G	2.060e^-4	0.627	INTRON Sh	TF binding site BDTNP1_TFBS_twi
2R	19333311	2R_19333311_SNP [dm3] 2R_23445788_SNP [dm6]	G	A	2.061e^-4	0.627	INTRON CG43795
2L	5597009	2L_5597009_SNP [dm3] 2L_5597009_SNP [dm6]	A	C	2.061e^-4	0.627	NON_SYNONYMOUS_CODING CG18266
X	5461434	X_5461434_SNP [dm3] X_5567401_SNP [dm6]	A	G	2.064e^-4	0.627	INTERGENIC
2L	2559851	2L_2559851_SNP [dm3] 2L_2559851_SNP [dm6]	T	C	2.065e^-4	0.627	INTERGENIC
2L	14230594	2L_14230594_SNP [dm3] 2L_14230594_SNP [dm6]	G	A	2.067e^-4	0.627	INTRON Dyrk2
X	16038456	X_16038456_SNP [dm3] X_16144423_SNP [dm6]	A	G	2.069e^-4	0.627	INTRON disco-r
3R	26757259	3R_26757259_SNP [dm3] 3R_30931537_SNP [dm6]	A	G	2.072e^-4	0.627	DOWNSTREAM Ptx1 INTERGENIC
3R	16295210	3R_16295210_SNP [dm3] 3R_20469488_SNP [dm6]	A	T	2.077e^-4	0.627	INTRON Gfrl
2L	3119009	2L_3119009_SNP [dm3] 2L_3119009_SNP [dm6]	G	A	2.083e^-4	0.628	INTRON toc
2R	8068377	2R_8068377_SNP [dm3] 2R_12180872_SNP [dm6]	G	T	2.091e^-4	0.628	NON_SYNONYMOUS_CODING wash UPSTREAM CG8860	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4856287	3R_4856287_SNP [dm3] 3R_9030565_SNP [dm6]	A	T	2.093e^-4	0.628	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13868253	3L_13868253_SNP [dm3] 3L_13875153_SNP [dm6]	C	T	2.097e^-4	0.628	INTRON dysc
2L	6625801	2L_6625801_SNP [dm3] 2L_6625801_SNP [dm6]	T	C	2.097e^-4	0.628	DOWNSTREAM CG34345 INTRON Oatp26F	TF binding site mE1_TFBS_cad
3L	14131236	3L_14131236_SNP [dm3] 3L_14138136_SNP [dm6]	A	G	2.103e^-4	0.628	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2L	3941300	2L_3941300_SNP [dm3] 2L_3941300_SNP [dm6]	T	G	2.107e^-4	0.628	INTRON fred
X	4617981	X_4617981_DEL [dm3] X_4723948_DEL [dm6]	TAATTT	T	2.108e^-4	0.628	INTRON Proc-R
3R	10297030	3R_10297030_SNP [dm3] 3R_14471308_SNP [dm6]	C	T	2.113e^-4	0.628	INTRON cv-c
3L	18833388	3L_18833388_SNP [dm3] 3L_18840288_SNP [dm6]	T	C	2.114e^-4	0.628	UTR_5_PRIME Indy INTRON Indy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
X	10614941	X_10614941_SNP [dm3] X_10720908_SNP [dm6]	C	T	2.126e^-4	0.631	INTRON CG32676	TF binding site mE1_TFBS_sens
X	9240620	X_9240620_SNP [dm3] X_9346587_SNP [dm6]	G	A	2.133e^-4	0.631	INTRON CG34449
2L	1864170	2L_1864170_SNP [dm3] 2L_1864170_SNP [dm6]	G	A	2.139e^-4	0.631	INTRON CG31663
2L	1929340	2L_1929340_INS [dm3] 2L_1929340_INS [dm6]	G	GGGAACAAAAATGTGT...	2.139e^-4	0.631	INTRON CG7337
2L	4305169	2L_4305169_SNP [dm3] 2L_4305169_SNP [dm6]	C	T	2.144e^-4	0.631	INTRON tutl
2L	11883951	2L_11883951_DEL [dm3] 2L_11883951_DEL [dm6]	GTTAAATAG	G	2.147e^-4	0.631	INTRON Pde1c
2R	4500130	2R_4500130_SNP [dm3] 2R_8612625_SNP [dm6]	G	T	2.158e^-4	0.631	DOWNSTREAM rgr INTRON CG8642
3L	7593720	3L_7593720_SNP [dm3] 3L_7600620_SNP [dm6]	C	T	2.159e^-4	0.631	INTRON CG33275
2R	8591100	2R_8591100_SNP [dm3] 2R_12703595_SNP [dm6]	T	A	2.160e^-4	0.631	INTERGENIC
3R	21909904	3R_21909904_SNP [dm3] 3R_26084182_SNP [dm6]	T	C	2.162e^-4	0.631	INTRON dys
X	12835438	X_12835438_SNP [dm3] X_12941405_SNP [dm6]	T	G	2.168e^-4	0.631	UTR_5_PRIME fne INTRON fne	TF binding site BDTNP1_TFBS_dl
3R	12551944	3R_12551944_SNP [dm3] 3R_16726222_SNP [dm6]	A	G	2.170e^-4	0.631	INTRON Ubx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	17204293	3L_17204293_SNP [dm3] 3L_17211193_SNP [dm6]	G	C	2.170e^-4	0.631	INTRON Rbp6	TF binding site BDTNP1_TFBS_dl
3L	14317178	3L_14317178_SNP [dm3] 3L_14324078_SNP [dm6]	A	T	2.172e^-4	0.631	INTRON fz & 1 other
2R	19018915	2R_19018915_DEL [dm3] 2R_23131392_DEL [dm6]	GTACAAGTATTTAAAGCTGT...	G	2.173e^-4	0.631	INTERGENIC
2L	12415402	2L_12415402_SNP [dm3] 2L_12415402_SNP [dm6]	C	T	2.179e^-4	0.631	INTRON vir-1
3L	2909309	3L_2909309_DEL [dm3] 3L_2909309_DEL [dm6]	TAAATGAATTT...	T	2.180e^-4	0.631	INTRON Shab
2R	5295456	2R_5295456_SNP [dm3] 2R_9407951_SNP [dm6]	G	T	2.184e^-4	0.631	INTRON wun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	5569611	3L_5569611_SNP [dm3] 3L_5576511_SNP [dm6]	T	C	2.187e^-4	0.631	INTRON Msr-110
X	17404716	X_17404716_INS [dm3] X_17510683_INS [dm6]	T	TAGTAGATATGT...	2.193e^-4	0.632	INTRON CG43658
3L	18356839	3L_18356839_SNP [dm3] 3L_18363739_SNP [dm6]	G	T	2.195e^-4	0.632	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	1092631	3L_1092631_SNP [dm3] 3L_1092631_SNP [dm6]	G	A	2.199e^-4	0.632	INTRON bab1	regulatory region REDfly_CRMs
3L	13220125	3L_13220125_SNP [dm3] 3L_13227025_SNP [dm6]	C	T	2.212e^-4	0.633	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2L	11083744	2L_11083744_SNP [dm3] 2L_11083744_SNP [dm6]	A	G	2.215e^-4	0.633	UTR_3_PRIME AstCC
3L	5590869	3L_5590869_SNP [dm3] 3L_5597769_SNP [dm6]	C	A	2.224e^-4	0.633	DOWNSTREAM CG5150 & 1 other INTERGENIC
3L	8265561	3L_8265561_SNP [dm3] 3L_8272461_SNP [dm6]	T	C	2.228e^-4	0.633	INTRON Dscam4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12145223	3R_12145223_SNP [dm3] 3R_16319501_SNP [dm6]	C	T	2.232e^-4	0.633	INTRON Sulf1
3L	9036002	3L_9036002_SNP [dm3] 3L_9042902_SNP [dm6]	A	G	2.234e^-4	0.633	INTRON Doc1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	4849158	2R_4849158_SNP [dm3] 2R_8961653_SNP [dm6]	C	A	2.236e^-4	0.633	UTR_3_PRIME babo
3L	14511725	3L_14511725_SNP [dm3] 3L_14518625_SNP [dm6]	T	C	2.236e^-4	0.633	DOWNSTREAM CG9592 INTRON bbg
3R	26532486	3R_26532486_SNP [dm3] 3R_30706764_SNP [dm6]	C	A	2.238e^-4	0.633	UPSTREAM CG31010 INTERGENIC
2L	13142031	2L_13142031_SNP [dm3] 2L_13142031_SNP [dm6]	C	T	2.241e^-4	0.633	DOWNSTREAM CG9928 INTERGENIC
2L	21977722	2L_21977722_SNP [dm3] 2L_21977722_SNP [dm6]	A	G	2.242e^-4	0.633	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5927856	3L_5927856_SNP [dm3] 3L_5934756_SNP [dm6]	T	A	2.244e^-4	0.633	INTRON CG33993
3R	19094629	3R_19094629_SNP [dm3] 3R_23268907_SNP [dm6]	C	A	2.247e^-4	0.633	UPSTREAM orb INTRON orb	TF binding site mE1_TFBS_cad
3R	13418023	3R_13418023_SNP [dm3] 3R_17592301_SNP [dm6]	A	G	2.252e^-4	0.633	INTERGENIC
2R	19483039	2R_19483039_SNP [dm3] 2R_23595516_SNP [dm6]	A	C	2.254e^-4	0.633	INTRON apt
X	4617978	X_4617978_SNP [dm3] X_4723945_SNP [dm6]	A	T	2.259e^-4	0.633	INTRON Proc-R
3L	10706959	3L_10706959_SNP [dm3] 3L_10713859_SNP [dm6]	A	G	2.260e^-4	0.633	INTERGENIC
3R	22842480	3R_22842480_SNP [dm3] 3R_27016758_SNP [dm6]	C	T	2.273e^-4	0.634	DOWNSTREAM CG17192 INTRON RYa-R
3L	4633019	3L_4633019_SNP [dm3] 3L_4633019_SNP [dm6]	G	A	2.280e^-4	0.634	INTRON axo
X	6493132	X_6493132_SNP [dm3] X_6599099_SNP [dm6]	C	T	2.280e^-4	0.634	SYNONYMOUS_CODING APC7 UPSTREAM pigs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7272896	2R_7272896_SNP [dm3] 2R_11385391_SNP [dm6]	T	G	2.283e^-4	0.634	SYNONYMOUS_CODING sprt	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	17405326	2L_17405326_INS [dm3] 2L_17405326_INS [dm6]	T	TT	2.285e^-4	0.634	DOWNSTREAM CLIP-190 INTRON CLIP-190
2R	4837187	2R_4837187_SNP [dm3] 2R_8949682_SNP [dm6]	C	T	2.289e^-4	0.634	SYNONYMOUS_CODING CG8229 INTRON CG8229 & 1 other
3L	2909335	3L_2909335_SNP [dm3] 3L_2909335_SNP [dm6]	A	T	2.289e^-4	0.634	INTRON Shab
2R	2398939	2R_2398939_SNP [dm3] 2R_6511434_SNP [dm6]	A	T	2.294e^-4	0.634	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2L	3941379	2L_3941379_SNP [dm3] 2L_3941379_SNP [dm6]	C	T	2.297e^-4	0.634	INTRON fred
2R	9283191	2R_9283191_SNP [dm3] 2R_13395686_SNP [dm6]	T	C	2.299e^-4	0.634	SYNONYMOUS_CODING CG4744
3R	1866157	3R_1866157_SNP [dm3] 3R_6040435_SNP [dm6]	A	T	2.302e^-4	0.634	INTERGENIC
2L	9383819	2L_9383819_SNP [dm3] 2L_9383819_SNP [dm6]	T	A	2.308e^-4	0.635	INTRON Shawl
3L	10523829	3L_10523829_SNP [dm3] 3L_10530729_SNP [dm6]	T	C	2.315e^-4	0.636	INTRON A2bp1
2L	12419396	2L_12419396_SNP [dm3] 2L_12419396_SNP [dm6]	A	T	2.323e^-4	0.636	INTRON vir-1
3L	3652102	3L_3652102_SNP [dm3] 3L_3652102_SNP [dm6]	T	C	2.324e^-4	0.636	INTRON dar1
2R	12492570	2R_12492570_SNP [dm3] 2R_16605065_SNP [dm6]	C	T	2.337e^-4	0.637	UPSTREAM CG8303 INTERGENIC
3L	3987713	3L_3987713_SNP [dm3] 3L_3987713_SNP [dm6]	C	T	2.343e^-4	0.637	SYNONYMOUS_CODING scrt	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14626320	3L_14626320_SNP [dm3] 3L_14633220_SNP [dm6]	G	A	2.346e^-4	0.637	NON_SYNONYMOUS_CODING dlp	TF binding site mE1_TFBS_Trl
3L	4192128	3L_4192128_SNP [dm3] 3L_4192128_SNP [dm6]	C	T	2.346e^-4	0.637	INTRON CG18675 & 1 other
2R	16583145	2R_16583145_SNP [dm3] 2R_20695640_SNP [dm6]	T	G	2.347e^-4	0.637	INTERGENIC
2L	19886926	2L_19886926_SNP [dm3] 2L_19886926_SNP [dm6]	T	C	2.349e^-4	0.637	INTRON sick	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	20358852	2L_20358852_SNP [dm3] 2L_20358852_SNP [dm6]	C	T	2.349e^-4	0.637	SYNONYMOUS_CODING RtGEF INTRON RtGEF	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	20611934	X_20611934_SNP [dm3] X_20740907_SNP [dm6]	C	A	2.355e^-4	0.638	DOWNSTREAM CR45059 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	12693552	2R_12693552_SNP [dm3] 2R_16806047_SNP [dm6]	C	A	2.370e^-4	0.639	INTERGENIC
3L	18833891	3L_18833891_SNP [dm3] 3L_18840791_SNP [dm6]	G	C	2.373e^-4	0.639	UPSTREAM Indy & 1 other INTRON Indy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	2424308	2R_2424308_SNP [dm3] 2R_6536803_SNP [dm6]	A	C	2.374e^-4	0.639	INTRON jing
3R	13807403	3R_13807403_SNP [dm3] 3R_17981681_SNP [dm6]	C	T	2.375e^-4	0.639	INTRON cpo
3L	8401103	3L_8401103_SNP [dm3] 3L_8408003_SNP [dm6]	G	A	2.378e^-4	0.639	SYNONYMOUS_CODING Oseg1 DOWNSTREAM CG13667
3R	9709687	3R_9709687_SNP [dm3] 3R_13883965_SNP [dm6]	A	T	2.388e^-4	0.641	INTERGENIC
2L	1863770	2L_1863770_SNP [dm3] 2L_1863770_SNP [dm6]	G	A	2.393e^-4	0.641	INTRON CG31663
2L	20126742	2L_20126742_INS [dm3] 2L_20126742_INS [dm6]	A	AA	2.396e^-4	0.641	INTERGENIC
3L	19341983	3L_19341983_SNP [dm3] 3L_19348883_SNP [dm6]	T	C	2.409e^-4	0.644	INTRON CG32206
3L	14507346	3L_14507346_SNP [dm3] 3L_14514246_SNP [dm6]	C	T	2.414e^-4	0.644	INTRON bbg	enhancer mE1_CBP_Enhancers TF binding site mE1_TFBS_bab1
3L	6438757	3L_6438757_SNP [dm3] 3L_6445657_SNP [dm6]	G	T	2.418e^-4	0.644	INTRON CG42747
3L	16748708	3L_16748708_SNP [dm3] 3L_16755608_SNP [dm6]	C	A	2.421e^-4	0.644	SYNONYMOUS_CODING CG42852
2R	4888730	2R_4888730_SNP [dm3] 2R_9001225_SNP [dm6]	A	G	2.430e^-4	0.645	INTRON Np
2R	4892319	2R_4892319_INS [dm3] 2R_9004814_INS [dm6]	T	TT	2.430e^-4	0.645	INTRON Np
3L	4538195	3L_4538195_SNP [dm3] 3L_4538195_SNP [dm6]	T	C	2.439e^-4	0.645	INTRON CG11353	TF binding site BDTNP1_TFBS_twi
2R	11649656	2R_11649656_SNP [dm3] 2R_15762151_SNP [dm6]	A	G	2.440e^-4	0.645	DOWNSTREAM CG30089 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	22831458	3R_22831458_SNP [dm3] 3R_27005736_SNP [dm6]	T	A	2.445e^-4	0.645	UPSTREAM CG6296 DOWNSTREAM CG6295 INTRON RYa-R
2R	12492237	2R_12492237_SNP [dm3] 2R_16604732_SNP [dm6]	G	C	2.448e^-4	0.645	UPSTREAM CG8303 INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	17213587	3L_17213587_SNP [dm3] 3L_17220487_SNP [dm6]	C	A	2.452e^-4	0.645	INTRON Rbp6
2R	14717804	2R_14717804_SNP [dm3] 2R_18830299_SNP [dm6]	T	A	2.454e^-4	0.645	UPSTREAM CG15082 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14610583	2R_14610583_SNP [dm3] 2R_18723078_SNP [dm6]	G	A	2.457e^-4	0.645	INTRON Hs3st-A
X	4617973	X_4617973_SNP [dm3] X_4723940_SNP [dm6]	T	A	2.460e^-4	0.645	INTRON Proc-R
3L	7055287	3L_7055287_SNP [dm3] 3L_7062187_SNP [dm6]	A	G	2.469e^-4	0.647	INTRON CG8641
2L	8695218	2L_8695218_SNP [dm3] 2L_8695218_SNP [dm6]	G	A	2.477e^-4	0.648	INTRON Hnf4
2L	11088145	2L_11088145_SNP [dm3] 2L_11088145_SNP [dm6]	A	G	2.491e^-4	0.648	UPSTREAM CG16854 INTRON CG16854
2R	16843019	2R_16843019_DEL [dm3] 2R_20955514_DEL [dm6]	GGGTGGTGGCGG...	G	2.493e^-4	0.648	INTRON hbn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6156757	2R_6156757_SNP [dm3] 2R_10269252_SNP [dm6]	T	A	2.497e^-4	0.648	DOWNSTREAM CG12910 INTRON CAP
2L	4063169	2L_4063169_SNP [dm3] 2L_4063169_SNP [dm6]	G	A	2.497e^-4	0.648	INTRON ed
3L	6637838	3L_6637838_SNP [dm3] 3L_6644738_SNP [dm6]	C	A	2.503e^-4	0.648	INTERGENIC
3R	24814905	3R_24814905_INS [dm3] 3R_28989183_INS [dm6]	T	TAGCC	2.504e^-4	0.648	INTERGENIC
3R	2036760	3R_2036760_SNP [dm3] 3R_6211038_SNP [dm6]	G	T	2.510e^-4	0.648	START_GAINED Osi2 UTR_5_PRIME Osi2 UPSTREAM Osi2 INTRON Osi2
2L	5575103	2L_5575103_SNP [dm3] 2L_5575103_SNP [dm6]	A	G	2.522e^-4	0.648	INTERGENIC
2L	22125105	2L_22125105_SNP [dm3] 2L_22125105_SNP [dm6]	A	G	2.527e^-4	0.648	UTR_3_PRIME CycK & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10633278	2R_10633278_SNP [dm3] 2R_14745773_SNP [dm6]	C	T	2.531e^-4	0.648	UPSTREAM Dro & 1 other INTERGENIC
2L	13867134	2L_13867134_SNP [dm3] 2L_13867134_SNP [dm6]	C	T	2.534e^-4	0.648	UPSTREAM CR44848 INTRON CenG1A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	4856246	3R_4856246_SNP [dm3] 3R_9030524_SNP [dm6]	A	G	2.537e^-4	0.648	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6768711	2R_6768711_SNP [dm3] 2R_10881206_SNP [dm6]	C	T	2.539e^-4	0.648	SYNONYMOUS_CODING Pex6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19273180	3R_19273180_SNP [dm3] 3R_23447458_SNP [dm6]	G	A	2.540e^-4	0.648	INTRON CG4374
2R	4087564	2R_4087564_SNP [dm3] 2R_8200059_SNP [dm6]	G	A	2.542e^-4	0.648	INTRON LRP1
2L	10818821	2L_10818821_SNP [dm3] 2L_10818821_SNP [dm6]	A	T	2.548e^-4	0.648	UPSTREAM CG6508 INTRON Nos
2L	1924770	2L_1924770_SNP [dm3] 2L_1924770_SNP [dm6]	G	A	2.548e^-4	0.648	INTRON CG7337
2R	11649646	2R_11649646_SNP [dm3] 2R_15762141_SNP [dm6]	C	T	2.550e^-4	0.648	DOWNSTREAM CG30089 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	20348777	2L_20348777_SNP [dm3] 2L_20348777_SNP [dm6]	G	C	2.551e^-4	0.648	SYNONYMOUS_CODING La DOWNSTREAM spir	TF binding site mE1_TFBS_cad
X	8348014	X_8348014_SNP [dm3] X_8453981_SNP [dm6]	C	A	2.551e^-4	0.648	INTRON org-1
X	12206124	X_12206124_SNP [dm3] X_12312091_SNP [dm6]	T	C	2.553e^-4	0.648	INTRON Ten-a
3R	27217756	3R_27217756_SNP [dm3] 3R_31392034_SNP [dm6]	C	A	2.554e^-4	0.648	SYNONYMOUS_CODING CG31204 DOWNSTREAM CG1607
2L	20290330	2L_20290330_SNP [dm3] 2L_20290330_SNP [dm6]	A	G	2.556e^-4	0.648	INTERGENIC
2L	19880526	2L_19880526_SNP [dm3] 2L_19880526_SNP [dm6]	G	A	2.563e^-4	0.649	INTRON sick
3R	19995802	3R_19995802_SNP [dm3] 3R_24170080_SNP [dm6]	A	C	2.567e^-4	0.649	UPSTREAM CG5510 INTERGENIC
3R	17761230	3R_17761230_SNP [dm3] 3R_21935508_SNP [dm6]	G	A	2.576e^-4	0.649	INTERGENIC
2L	7967558	2L_7967558_SNP [dm3] 2L_7967558_SNP [dm6]	A	G	2.582e^-4	0.649	INTRON Snoo
3L	4872896	3L_4872896_SNP [dm3] 3L_4872896_SNP [dm6]	C	T	2.584e^-4	0.649	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9102690	2L_9102690_SNP [dm3] 2L_9102690_SNP [dm6]	T	G	2.587e^-4	0.649	INTERGENIC
X	9083391	X_9083391_INS [dm3] X_9189358_INS [dm6]	T	TATTCAACA	2.587e^-4	0.649	UTR_3_PRIME CG12115 DOWNSTREAM mei-P26
2L	9102528	2L_9102528_DEL [dm3] 2L_9102528_DEL [dm6]	TT	T	2.590e^-4	0.649	INTERGENIC
3L	8070718	3L_8070718_SNP [dm3] 3L_8077618_SNP [dm6]	A	G	2.593e^-4	0.649	INTRON Ect4	TF binding site mE1_TFBS_Trl
2L	19690361	2L_19690361_SNP [dm3] 2L_19690361_SNP [dm6]	A	C	2.605e^-4	0.649	INTRON Lar
2R	20720870	2R_20720870_SNP [dm3] 2R_24833347_SNP [dm6]	C	T	2.606e^-4	0.649	INTRON Dll	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15519363	2L_15519363_SNP [dm3] 2L_15519363_SNP [dm6]	C	A	2.606e^-4	0.649	INTERGENIC	TF binding site mE1_TFBS_inv
2R	20356565	2R_20356565_SNP [dm3] 2R_24469042_SNP [dm6]	G	A	2.612e^-4	0.649	INTRON CG13579
3R	10824055	3R_10824055_SNP [dm3] 3R_14998333_SNP [dm6]	C	G	2.614e^-4	0.649	INTERGENIC
3R	7029719	3R_7029719_SNP [dm3] 3R_11203997_SNP [dm6]	G	T	2.616e^-4	0.649	INTRON cu
4	854283	4_854283_SNP [dm3] 4_833657_SNP [dm6]	G	A	2.619e^-4	0.649	START_GAINED Sox102F UTR_5_PRIME Sox102F	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
3L	1891028	3L_1891028_SNP [dm3] 3L_1891028_SNP [dm6]	G	A	2.622e^-4	0.649	SYNONYMOUS_CODING Tmhs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	6297627	3L_6297627_SNP [dm3] 3L_6304527_SNP [dm6]	T	G	2.624e^-4	0.649	DOWNSTREAM CR45114 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19333313	2R_19333313_DEL [dm3] 2R_23445790_DEL [dm6]	TG	T	2.625e^-4	0.649	INTRON CG43795
3R	22299796	3R_22299796_SNP [dm3] 3R_26474074_SNP [dm6]	G	A	2.633e^-4	0.65	SYNONYMOUS_CODING plum
3R	7376501	3R_7376501_SNP [dm3] 3R_11550779_SNP [dm6]	A	C	2.641e^-4	0.65	INTERGENIC
2R	19976766	2R_19976766_SNP [dm3] 2R_24089243_SNP [dm6]	A	G	2.642e^-4	0.65	NON_SYNONYMOUS_CODING snama
2L	11082327	2L_11082327_SNP [dm3] 2L_11082327_SNP [dm6]	G	A	2.645e^-4	0.65	UPSTREAM AstC INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	9608662	2R_9608662_SNP [dm3] 2R_13721157_SNP [dm6]	G	A	2.646e^-4	0.65	INTRON fas
2R	4763838	2R_4763838_SNP [dm3] 2R_8876333_SNP [dm6]	C	A	2.653e^-4	0.65	SYNONYMOUS_CODING RyR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25209143	3R_25209143_INS [dm3] 3R_29383421_INS [dm6]	G	GCT	2.668e^-4	0.651	INTRON Ptp99A
2R	4195164	2R_4195164_SNP [dm3] 2R_8307659_SNP [dm6]	T	C	2.673e^-4	0.651	INTERGENIC
3L	4872602	3L_4872602_SNP [dm3] 3L_4872602_SNP [dm6]	T	C	2.678e^-4	0.651	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4617969	X_4617969_DEL [dm3] X_4723936_DEL [dm6]	GCC	AA	2.679e^-4	0.651	INTRON Proc-R
3R	17881283	3R_17881283_SNP [dm3] 3R_22055561_SNP [dm6]	C	A	2.684e^-4	0.651	INTRON how
3R	10829941	3R_10829941_SNP [dm3] 3R_15004219_SNP [dm6]	A	T	2.684e^-4	0.651	DOWNSTREAM CR45599 INTERGENIC
3R	15366467	3R_15366467_SNP [dm3] 3R_19540745_SNP [dm6]	A	G	2.686e^-4	0.651	INTRON Dys
3L	10556453	3L_10556453_SNP [dm3] 3L_10563353_SNP [dm6]	C	T	2.688e^-4	0.651	INTRON A2bp1
3R	9685437	3R_9685437_SNP [dm3] 3R_13859715_SNP [dm6]	A	T	2.693e^-4	0.651	INTERGENIC
3R	5466392	3R_5466392_SNP [dm3] 3R_9640670_SNP [dm6]	C	T	2.699e^-4	0.651	UTR_5_PRIME Dh44 INTRON Dh44
3R	17248921	3R_17248921_SNP [dm3] 3R_21423199_SNP [dm6]	A	T	2.702e^-4	0.651	INTRON lbl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
X	14613361	X_14613361_SNP [dm3] X_14719328_SNP [dm6]	A	C	2.703e^-4	0.651	UPSTREAM hog INTRON NetB	transposable element FlyBase
2R	9444906	2R_9444906_SNP [dm3] 2R_13557401_SNP [dm6]	T	A	2.705e^-4	0.651	DOWNSTREAM snoRNA:Psi28S-1153 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	18126298	3L_18126298_SNP [dm3] 3L_18133198_SNP [dm6]	C	A	2.711e^-4	0.651	UPSTREAM Cyp312a1 INTERGENIC
3L	7486035	3L_7486035_SNP [dm3] 3L_7492935_SNP [dm6]	G	T	2.713e^-4	0.651	SYNONYMOUS_CODING Cyp316a1 DOWNSTREAM Cyp4d8
X	1542437	X_1542437_SNP [dm3] X_1648404_SNP [dm6]	G	T	2.714e^-4	0.651	SYNONYMOUS_CODING br INTRON Mur2B & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8980985	2R_8980985_INS [dm3] 2R_13093480_INS [dm6]	T	TAAAAATTCTG...	2.719e^-4	0.651	INTERGENIC
2R	5181966	2R_5181966_SNP [dm3] 2R_9294461_SNP [dm6]	T	A	2.719e^-4	0.651	UPSTREAM Drep-2 INTRON Drep-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14475411	2R_14475411_SNP [dm3] 2R_18587906_SNP [dm6]	G	T	2.722e^-4	0.651	INTRON GEFmeso
3L	19238997	3L_19238997_SNP [dm3] 3L_19245897_SNP [dm6]	T	C	2.723e^-4	0.651	INTERGENIC
3R	10768281	3R_10768281_SNP [dm3] 3R_14942559_SNP [dm6]	T	G	2.729e^-4	0.651	INTERGENIC
2L	3601358	2L_3601358_SNP [dm3] 2L_3601358_SNP [dm6]	T	C	2.730e^-4	0.651	INTERGENIC	TF binding site mE1_TFBS_sens
2R	4953197	2R_4953197_SNP [dm3] 2R_9065692_SNP [dm6]	G	T	2.736e^-4	0.651	INTRON ana	regulatory region REDfly_CRMs
3R	22376442	3R_22376442_SNP [dm3] 3R_26550720_SNP [dm6]	T	A	2.743e^-4	0.652	INTRON scrib	TF binding site BDTNP1_TFBS_twi
2L	10817759	2L_10817759_SNP [dm3] 2L_10817759_SNP [dm6]	C	G	2.754e^-4	0.654	INTRON Nos
2R	14625793	2R_14625793_SNP [dm3] 2R_18738288_SNP [dm6]	T	G	2.762e^-4	0.654	UPSTREAM CG33998 DOWNSTREAM CR30121 INTRON Hs3st-A
2L	975729	2L_975729_SNP [dm3] 2L_975729_SNP [dm6]	A	G	2.763e^-4	0.654	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3L	9348433	3L_9348433_SNP [dm3] 3L_9355333_SNP [dm6]	T	A	2.769e^-4	0.654	NON_SYNONYMOUS_CODING CG32040 INTRON UGP
X	5411898	X_5411898_SNP [dm3] X_5517865_SNP [dm6]	T	A	2.769e^-4	0.654	UPSTREAM CR45518 INTRON CG12730	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	10515438	3L_10515438_SNP [dm3] 3L_10522338_SNP [dm6]	A	C	2.772e^-4	0.654	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	15397895	3R_15397895_SNP [dm3] 3R_19572173_SNP [dm6]	G	A	2.793e^-4	0.656	INTRON Dys
2L	7725506	2L_7725506_SNP [dm3] 2L_7725506_SNP [dm6]	C	A	2.798e^-4	0.656	INTRON CG13795
3L	6395013	3L_6395013_SNP [dm3] 3L_6401913_SNP [dm6]	G	A	2.802e^-4	0.656	INTRON CG42747
2R	19341816	2R_19341816_SNP [dm3] 2R_23454293_SNP [dm6]	T	A	2.803e^-4	0.656	INTRON CG43795
2L	16997294	2L_16997294_SNP [dm3] 2L_16997294_SNP [dm6]	A	G	2.805e^-4	0.656	INTERGENIC
2L	20422800	2L_20422800_INS [dm3] 2L_20422800_INS [dm6]	T	TT	2.815e^-4	0.656	UTR_3_PRIME Arpc2 DOWNSTREAM snoRNA:Psi18S-640g & 2 others
3R	16981669	3R_16981669_SNP [dm3] 3R_21155947_SNP [dm6]	A	G	2.815e^-4	0.656	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Ubx
3R	8432967	3R_8432967_SNP [dm3] 3R_12607245_SNP [dm6]	G	T	2.818e^-4	0.656	INTERGENIC
X	11038530	X_11038530_SNP [dm3] X_11144497_SNP [dm6]	A	G	2.821e^-4	0.656	DOWNSTREAM CG15202 & 1 other INTRON CG15201	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11038534	X_11038534_SNP [dm3] X_11144501_SNP [dm6]	C	G	2.821e^-4	0.656	DOWNSTREAM CG15202 & 1 other INTRON CG15201	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20039988	X_20039988_SNP [dm3] X_20145955_SNP [dm6]	G	A	2.825e^-4	0.656	INTERGENIC
3R	26069951	3R_26069951_SNP [dm3] 3R_30244229_SNP [dm6]	G	A	2.826e^-4	0.656	SYNONYMOUS_CODING CG9733 UPSTREAM CG9737
3L	6395012	3L_6395012_SNP [dm3] 3L_6401912_SNP [dm6]	T	C	2.829e^-4	0.656	INTRON CG42747
3L	17213608	3L_17213608_SNP [dm3] 3L_17220508_SNP [dm6]	C	G	2.829e^-4	0.656	INTRON Rbp6
2R	17100041	2R_17100041_SNP [dm3] 2R_21212536_SNP [dm6]	T	C	2.835e^-4	0.657	DOWNSTREAM CG4302 INTRON CG44245
3R	15768261	3R_15768261_INS [dm3] 3R_19942539_INS [dm6]	T	TACAT	2.843e^-4	0.657	INTRON Hs6st
2L	11085278	2L_11085278_SNP [dm3] 2L_11085278_SNP [dm6]	C	A	2.852e^-4	0.657	UPSTREAM AstCC INTERGENIC
3L	12503722	3L_12503722_SNP [dm3] 3L_12510622_SNP [dm6]	T	C	2.856e^-4	0.657	SYNONYMOUS_CODING sti
3R	7019873	3R_7019873_SNP [dm3] 3R_11194151_SNP [dm6]	G	C	2.856e^-4	0.657	INTERGENIC
3L	13990972	3L_13990972_SNP [dm3] 3L_13997872_SNP [dm6]	A	G	2.860e^-4	0.657	UTR_3_PRIME CG17361 DOWNSTREAM CG17359
3L	13990973	3L_13990973_SNP [dm3] 3L_13997873_SNP [dm6]	A	T	2.860e^-4	0.657	UTR_3_PRIME CG17361 DOWNSTREAM CG17359
3L	6093879	3L_6093879_SNP [dm3] 3L_6100779_SNP [dm6]	G	T	2.864e^-4	0.657	INTRON Ets65A
3L	14626325	3L_14626325_SNP [dm3] 3L_14633225_SNP [dm6]	C	T	2.869e^-4	0.658	SYNONYMOUS_CODING dlp	TF binding site mE1_TFBS_Trl
3R	26824267	3R_26824267_SNP [dm3] 3R_30998545_SNP [dm6]	T	C	2.873e^-4	0.658	INTRON 5-HT7
X	2135171	X_2135171_SNP [dm3] X_2241138_SNP [dm6]	T	G	2.881e^-4	0.659	SYNONYMOUS_CODING kz UPSTREAM fs_1_K10	TF binding site mE1_TFBS_sens
3R	26300362	3R_26300362_SNP [dm3] 3R_30474640_SNP [dm6]	A	C	2.887e^-4	0.659	INTRON PH4alphaEFB	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	15384683	2L_15384683_SNP [dm3] 2L_15384683_SNP [dm6]	G	A	2.895e^-4	0.66	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna
2L	2559776	2L_2559776_SNP [dm3] 2L_2559776_SNP [dm6]	A	G	2.898e^-4	0.66	INTERGENIC
2R	18402801	2R_18402801_SNP [dm3] 2R_22515296_SNP [dm6]	T	G	2.900e^-4	0.66	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	8563566	X_8563566_SNP [dm3] X_8669533_SNP [dm6]	A	C	2.904e^-4	0.66	INTERGENIC
2R	12693525	2R_12693525_SNP [dm3] 2R_16806020_SNP [dm6]	A	G	2.905e^-4	0.66	INTERGENIC
2R	4792295	2R_4792295_SNP [dm3] 2R_8904790_SNP [dm6]	C	T	2.910e^-4	0.66	UTR_3_PRIME Ggamma1 DOWNSTREAM CG8258	TF binding site mE1_TFBS_cad
2L	5481674	2L_5481674_SNP [dm3] 2L_5481674_SNP [dm6]	T	C	2.917e^-4	0.661	INTERGENIC
2L	19799896	2L_19799896_SNP [dm3] 2L_19799896_SNP [dm6]	C	T	2.928e^-4	0.662	INTRON sick	TF binding site mE1_TFBS_cad
2L	5638685	2L_5638685_SNP [dm3] 2L_5638685_SNP [dm6]	T	G	2.933e^-4	0.662	INTRON CG31646
3R	19585199	3R_19585199_SNP [dm3] 3R_23759477_SNP [dm6]	G	C	2.934e^-4	0.662	SYNONYMOUS_CODING Plip UPSTREAM Hrd3 DOWNSTREAM CG10219	TF binding site mE1_TFBS_sens
3R	13660897	3R_13660897_SNP [dm3] 3R_17835175_SNP [dm6]	A	T	2.946e^-4	0.662	INTRON tinc
3L	10725900	3L_10725900_INS [dm3] 3L_10732800_INS [dm6]	T	TGTTGCT	2.948e^-4	0.662	INTERGENIC
3L	10725902	3L_10725902_SNP [dm3] 3L_10732802_SNP [dm6]	C	G	2.948e^-4	0.662	INTERGENIC
3L	10725903	3L_10725903_SNP [dm3] 3L_10732803_SNP [dm6]	G	C	2.948e^-4	0.662	INTERGENIC
2R	4793106	2R_4793106_SNP [dm3] 2R_8905601_SNP [dm6]	T	G	2.954e^-4	0.662	DOWNSTREAM Ggamma1 INTRON CG8258	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	4793107	2R_4793107_SNP [dm3] 2R_8905602_SNP [dm6]	A	G	2.954e^-4	0.662	DOWNSTREAM Ggamma1 INTRON CG8258	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	2679991	3R_2679991_SNP [dm3] 3R_6854269_SNP [dm6]	C	A	2.956e^-4	0.662	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	17770131	2R_17770131_SNP [dm3] 2R_21882626_SNP [dm6]	A	G	2.960e^-4	0.662	UPSTREAM Fili & 1 other INTRON Fili
X	13203533	X_13203533_SNP [dm3] X_13309500_SNP [dm6]	C	A	2.976e^-4	0.663	INTRON IP3K2
3L	9017587	3L_9017587_SNP [dm3] 3L_9024487_SNP [dm6]	C	T	2.976e^-4	0.663	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	8099021	3R_8099021_SNP [dm3] 3R_12273299_SNP [dm6]	C	T	2.978e^-4	0.663	SYNONYMOUS_CODING Sfp87B INTRON svp
3L	1093297	3L_1093297_SNP [dm3] 3L_1093297_SNP [dm6]	T	A	2.979e^-4	0.663	INTRON bab1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	16874638	2R_16874638_SNP [dm3] 2R_20987133_SNP [dm6]	G	A	2.986e^-4	0.663	SYNONYMOUS_CODING CG3216 UPSTREAM CG15651	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14534594	3L_14534594_SNP [dm3] 3L_14541494_SNP [dm6]	C	G	2.986e^-4	0.663	UTR_3_PRIME CG9238 DOWNSTREAM CG9238
3R	26472160	3R_26472160_SNP [dm3] 3R_30646438_SNP [dm6]	A	G	2.990e^-4	0.663	NON_SYNONYMOUS_CODING PH4alphaPV UPSTREAM CG31013	TF binding site mE1_TFBS_sens
3L	20896311	3L_20896311_SNP [dm3] 3L_20903211_SNP [dm6]	T	A	2.998e^-4	0.663	DOWNSTREAM CR45383 INTERGENIC
2R	5094646	2R_5094646_DEL [dm3] 2R_9207141_DEL [dm6]	AAA	A	3.000e^-4	0.663	UPSTREAM VhaAC45 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
X	17404706	X_17404706_SNP [dm3] X_17510673_SNP [dm6]	G	T	3.005e^-4	0.663	INTRON CG43658
2L	3119592	2L_3119592_DEL [dm3] 2L_3119592_DEL [dm6]	GGCCTTCCAGCTTGTTCCTG...	G	3.006e^-4	0.663	INTRON toc
3L	13019846	3L_13019846_SNP [dm3] 3L_13026746_SNP [dm6]	T	A	3.011e^-4	0.663	UPSTREAM Zmynd10 INTERGENIC
2L	22566852	2L_22566852_DEL [dm3] 2L_22674120_DEL [dm6]	TGAAAAAAGAACAAACAATT...	T	3.015e^-4	0.663	INTRON CG40006
2L	4063151	2L_4063151_SNP [dm3] 2L_4063151_SNP [dm6]	A	G	3.016e^-4	0.663	INTRON ed
3L	6874385	3L_6874385_SNP [dm3] 3L_6881285_SNP [dm6]	T	C	3.023e^-4	0.664	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
4	956145	4_956145_SNP [dm3] 4_935519_SNP [dm6]	C	G	3.029e^-4	0.664	INTERGENIC	transposable element FlyBase
2L	3505732	2L_3505732_SNP [dm3] 2L_3505732_SNP [dm6]	C	G	3.032e^-4	0.664	INTRON tim	TF binding site BDTNP1_TFBS_twi
3R	19030623	3R_19030623_SNP [dm3] 3R_23204901_SNP [dm6]	C	A	3.034e^-4	0.664	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
X	11331207	X_11331207_SNP [dm3] X_11437174_SNP [dm6]	G	A	3.041e^-4	0.665	INTRON Evi5
3L	18833859	3L_18833859_SNP [dm3] 3L_18840759_SNP [dm6]	T	G	3.047e^-4	0.665	UPSTREAM Indy & 1 other INTRON Indy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	10714056	2L_10714056_SNP [dm3] 2L_10714056_SNP [dm6]	C	G	3.053e^-4	0.666	INTERGENIC
2R	19707285	2R_19707285_DEL [dm3] 2R_23819762_DEL [dm6]	CCAATCGC	C	3.055e^-4	0.666	UPSTREAM CG5549 INTERGENIC
3R	17066783	3R_17066783_SNP [dm3] 3R_21241061_SNP [dm6]	T	A	3.067e^-4	0.666	INTERGENIC	regulatory region REDfly_CRMs
2R	11649697	2R_11649697_SNP [dm3] 2R_15762192_SNP [dm6]	T	G	3.068e^-4	0.666	DOWNSTREAM CG30089 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	15506418	3R_15506418_SNP [dm3] 3R_19680696_SNP [dm6]	A	G	3.072e^-4	0.666	INTRON Naam
2R	6564198	2R_6564198_SNP [dm3] 2R_10676693_SNP [dm6]	C	T	3.077e^-4	0.666	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19927180	2L_19927180_SNP [dm3] 2L_19927180_SNP [dm6]	T	A	3.081e^-4	0.666	INTRON sick
4	637343	4_637343_SNP [dm3] 4_616717_SNP [dm6]	T	A	3.083e^-4	0.666	INTRON Eph	transposable element FlyBase
2R	19338638	2R_19338638_SNP [dm3] 2R_23451115_SNP [dm6]	G	A	3.085e^-4	0.666	INTRON CG43795
3R	17769526	3R_17769526_SNP [dm3] 3R_21943804_SNP [dm6]	C	T	3.089e^-4	0.666	INTERGENIC
X	11356087	X_11356087_SNP [dm3] X_11462054_SNP [dm6]	T	A	3.090e^-4	0.666	INTRON CG43155	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12853702	3L_12853702_SNP [dm3] 3L_12860602_SNP [dm6]	C	T	3.104e^-4	0.668	SYNONYMOUS_CODING CG32107
3R	24262786	3R_24262786_SNP [dm3] 3R_28437064_SNP [dm6]	G	C	3.110e^-4	0.668	INTRON beat-VI
2L	19768027	2L_19768027_SNP [dm3] 2L_19768027_SNP [dm6]	T	G	3.113e^-4	0.668	INTRON bsh	TF binding site mE1_TFBS_cad
3L	7169913	3L_7169913_SNP [dm3] 3L_7176813_SNP [dm6]	T	A	3.114e^-4	0.668	INTRON Dscam2
3L	12134896	3L_12134896_SNP [dm3] 3L_12141796_SNP [dm6]	A	T	3.122e^-4	0.669	NON_SYNONYMOUS_CODING RhoGAP68F
3R	17707067	3R_17707067_SNP [dm3] 3R_21881345_SNP [dm6]	G	T	3.126e^-4	0.669	SYNONYMOUS_CODING CG31465 DOWNSTREAM P5CDh2 EXON CR45046
3R	8083447	3R_8083447_SNP [dm3] 3R_12257725_SNP [dm6]	T	C	3.127e^-4	0.669	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	14564735	3L_14564735_SNP [dm3] 3L_14571635_SNP [dm6]	A	C	3.131e^-4	0.669	INTERGENIC
X	10614944	X_10614944_SNP [dm3] X_10720911_SNP [dm6]	A	G	3.133e^-4	0.669	INTRON CG32676	TF binding site mE1_TFBS_sens
2R	4830306	2R_4830306_SNP [dm3] 2R_8942801_SNP [dm6]	T	C	3.139e^-4	0.669	UPSTREAM CR44274 DOWNSTREAM CR44273 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12513691	3L_12513691_SNP [dm3] 3L_12520591_SNP [dm6]	G	A	3.140e^-4	0.669	UTR_3_PRIME tral DOWNSTREAM tral & 1 other
2L	13114648	2L_13114648_SNP [dm3] 2L_13114648_SNP [dm6]	T	G	3.148e^-4	0.669	INTERGENIC
X	16087530	X_16087530_SNP [dm3] X_16193497_SNP [dm6]	T	C	3.153e^-4	0.67	INTERGENIC
X	14266210	X_14266210_SNP [dm3] X_14372177_SNP [dm6]	T	C	3.161e^-4	0.67	INTRON dpr8
2R	15823759	2R_15823759_SNP [dm3] 2R_19936254_SNP [dm6]	A	G	3.169e^-4	0.67	INTERGENIC
4	486432	4_486432_SNP [dm3] 4_465806_SNP [dm6]	C	A	3.171e^-4	0.67	INTRON bip2
2R	15427939	2R_15427939_SNP [dm3] 2R_19540434_SNP [dm6]	C	A	3.174e^-4	0.67	INTRON sm
2L	5639104	2L_5639104_SNP [dm3] 2L_5639104_SNP [dm6]	C	G	3.181e^-4	0.67	INTRON CG31646
3R	10359296	3R_10359296_SNP [dm3] 3R_14533574_SNP [dm6]	T	G	3.181e^-4	0.67	INTRON Pde6
3L	18356836	3L_18356836_SNP [dm3] 3L_18363736_SNP [dm6]	G	A	3.187e^-4	0.67	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5898941	2L_5898941_MNP [dm3] 2L_5898941_MNP [dm6]	AGT	CTG	3.190e^-4	0.67	INTERGENIC
2L	4394714	2L_4394714_SNP [dm3] 2L_4394714_SNP [dm6]	C	A	3.191e^-4	0.67	SYNONYMOUS_CODING l_2_k05819 UPSTREAM CG3652	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	14555269	2R_14555269_SNP [dm3] 2R_18667764_SNP [dm6]	T	C	3.192e^-4	0.67	UTR_3_PRIME edl	TF binding site mE1_TFBS_HSA
3L	1392317	3L_1392317_SNP [dm3] 3L_1392317_SNP [dm6]	T	A	3.194e^-4	0.67	INTRON Ptp61F	TF binding site mE1_TFBS_cad
3L	9635050	3L_9635050_SNP [dm3] 3L_9641950_SNP [dm6]	C	G	3.203e^-4	0.671	DOWNSTREAM CG18180 INTRON fry
2R	20139544	2R_20139544_SNP [dm3] 2R_24252021_SNP [dm6]	A	C	3.207e^-4	0.671	UPSTREAM Ir60a DOWNSTREAM snoRNA:Me18S-A1597 INTRON nord
2R	1344272	2R_1344272_SNP [dm3] 2R_5456767_SNP [dm6]	A	G	3.219e^-4	0.672	DOWNSTREAM laccase2 INTERGENIC	transposable element FlyBase
3R	16295304	3R_16295304_SNP [dm3] 3R_20469582_SNP [dm6]	G	T	3.220e^-4	0.672	INTRON Gfrl
X	19257259	X_19257259_DEL [dm3] X_19363226_DEL [dm6]	AA	A	3.231e^-4	0.672	INTRON kek5	TF binding site BDTNP1_TFBS_dl
3R	26319284	3R_26319284_SNP [dm3] 3R_30493562_SNP [dm6]	A	C	3.233e^-4	0.672	INTRON PH4alphaMP
3L	1281639	3L_1281639_INS [dm3] 3L_1281639_INS [dm6]	C	CTTTTC	3.239e^-4	0.672	INTRON CG32333
X	10190777	X_10190777_SNP [dm3] X_10296744_SNP [dm6]	A	C	3.241e^-4	0.672	INTRON alpha-Man-I
3L	10528417	3L_10528417_SNP [dm3] 3L_10535317_SNP [dm6]	T	G	3.246e^-4	0.672	INTRON A2bp1
2R	4721078	2R_4721078_SNP [dm3] 2R_8833573_SNP [dm6]	A	G	3.248e^-4	0.672	INTRON sns	TF binding site mE1_TFBS_cad
2R	9625876	2R_9625876_SNP [dm3] 2R_13738371_SNP [dm6]	C	A	3.249e^-4	0.672	INTRON fas
2R	5837647	2R_5837647_SNP [dm3] 2R_9950142_SNP [dm6]	T	G	3.251e^-4	0.672	INTRON Mef2
2R	4942521	2R_4942521_SNP [dm3] 2R_9055016_SNP [dm6]	T	C	3.263e^-4	0.672	INTRON CG13743	TF binding site BDTNP1_TFBS_twi
2R	9630031	2R_9630031_SNP [dm3] 2R_13742526_SNP [dm6]	G	A	3.265e^-4	0.672	INTRON fas
X	9099573	X_9099573_SNP [dm3] X_9205540_SNP [dm6]	G	A	3.274e^-4	0.672	DOWNSTREAM CG12119 INTERGENIC
3R	25459148	3R_25459148_SNP [dm3] 3R_29633426_SNP [dm6]	G	T	3.275e^-4	0.672	INTRON Dop1R2
4	1106389	4_1106389_SNP [dm3] 4_1085763_SNP [dm6]	C	A	3.276e^-4	0.672	UPSTREAM Actbeta INTERGENIC	regulatory region REDfly_CRMs
2R	4500500	2R_4500500_SNP [dm3] 2R_8612995_SNP [dm6]	T	C	3.280e^-4	0.672	DOWNSTREAM rgr INTRON CG8642	TF binding site mE1_TFBS_cad
3L	6760804	3L_6760804_SNP [dm3] 3L_6767704_SNP [dm6]	G	A	3.288e^-4	0.672	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	14219511	3L_14219511_INS [dm3] 3L_14226411_INS [dm6]	G	GAG	3.292e^-4	0.672	INTRON nuf	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	10381440	2L_10381440_SNP [dm3] 2L_10381440_SNP [dm6]	G	A	3.294e^-4	0.672	NON_SYNONYMOUS_CODING gny UPSTREAM CG5096
2L	12759666	2L_12759666_SNP [dm3] 2L_12759666_SNP [dm6]	G	T	3.297e^-4	0.672	DOWNSTREAM CG15483 INTERGENIC
2R	16584110	2R_16584110_SNP [dm3] 2R_20696605_SNP [dm6]	G	C	3.298e^-4	0.672	INTERGENIC
2L	10055344	2L_10055344_SNP [dm3] 2L_10055344_SNP [dm6]	T	C	3.299e^-4	0.672	SYNONYMOUS_CODING Cpr31A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8563573	X_8563573_SNP [dm3] X_8669540_SNP [dm6]	T	G	3.301e^-4	0.672	INTERGENIC
3L	10930380	3L_10930380_SNP [dm3] 3L_10937280_SNP [dm6]	T	G	3.304e^-4	0.672	INTERGENIC
3R	20006203	3R_20006203_SNP [dm3] 3R_24180481_SNP [dm6]	C	T	3.308e^-4	0.672	INTRON CG13606	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12492731	3R_12492731_INS [dm3] 3R_16667009_INS [dm6]	G	GCGAGTG	3.315e^-4	0.672	INTRON Ubx
2L	20298997	2L_20298997_SNP [dm3] 2L_20298997_SNP [dm6]	G	T	3.316e^-4	0.672	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	25203154	3R_25203154_SNP [dm3] 3R_29377432_SNP [dm6]	C	A	3.325e^-4	0.672	UPSTREAM Ptp99A INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	7728824	3L_7728824_SNP [dm3] 3L_7735724_SNP [dm6]	G	C	3.325e^-4	0.672	INTRON CG32373 & 1 other
3R	17707018	3R_17707018_SNP [dm3] 3R_21881296_SNP [dm6]	A	G	3.330e^-4	0.672	NON_SYNONYMOUS_CODING CG31465 DOWNSTREAM P5CDh2 EXON CR45046
X	7970522	X_7970522_SNP [dm3] X_8076489_SNP [dm6]	T	G	3.336e^-4	0.672	SYNONYMOUS_CODING CG1571	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	22831134	3R_22831134_SNP [dm3] 3R_27005412_SNP [dm6]	T	C	3.337e^-4	0.672	DOWNSTREAM CG6295 INTRON RYa-R & 1 other
2L	7761203	2L_7761203_SNP [dm3] 2L_7761203_SNP [dm6]	A	G	3.337e^-4	0.672	INTRON CG7196
4	655974	4_655974_SNP [dm3] 4_635348_SNP [dm6]	C	A	3.342e^-4	0.672	UTR_3_PRIME CG1732 DOWNSTREAM CG9935
3L	5917760	3L_5917760_SNP [dm3] 3L_5924660_SNP [dm6]	A	G	3.342e^-4	0.672	INTRON Vap-33B
2R	7637515	2R_7637515_SNP [dm3] 2R_11750010_SNP [dm6]	A	T	3.349e^-4	0.672	INTERGENIC
3R	9685343	3R_9685343_SNP [dm3] 3R_13859621_SNP [dm6]	C	T	3.352e^-4	0.672	INTERGENIC
2R	3848480	2R_3848480_SNP [dm3] 2R_7960975_SNP [dm6]	G	C	3.353e^-4	0.672	SYNONYMOUS_CODING Sep5 UPSTREAM CG2915	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	14325898	3L_14325898_SNP [dm3] 3L_14332798_SNP [dm6]	A	T	3.355e^-4	0.672	INTRON fz
3L	10515500	3L_10515500_SNP [dm3] 3L_10522400_SNP [dm6]	A	C	3.356e^-4	0.672	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	13989413	2L_13989413_SNP [dm3] 2L_13989413_SNP [dm6]	A	T	3.360e^-4	0.673	INTRON rk
2L	21978139	2L_21978139_DEL [dm3] 2L_21978139_DEL [dm6]	CACTC	C	3.368e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10289423	3L_10289423_SNP [dm3] 3L_10296323_SNP [dm6]	G	T	3.376e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
4	951940	4_951940_SNP [dm3] 4_931314_SNP [dm6]	C	A	3.379e^-4	0.674	UPSTREAM eIF4G INTERGENIC	transposable element FlyBase
2L	7725511	2L_7725511_SNP [dm3] 2L_7725511_SNP [dm6]	T	C	3.380e^-4	0.674	INTRON CG13795
3L	18423295	3L_18423295_SNP [dm3] 3L_18430195_SNP [dm6]	T	A	3.392e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19737165	2L_19737165_SNP [dm3] 2L_19737165_SNP [dm6]	A	G	3.392e^-4	0.674	DOWNSTREAM Nf-YB INTERGENIC
2R	4942310	2R_4942310_SNP [dm3] 2R_9054805_SNP [dm6]	C	G	3.398e^-4	0.674	INTRON CG13743
3L	2718736	3L_2718736_SNP [dm3] 3L_2718736_SNP [dm6]	T	A	3.405e^-4	0.674	UTR_3_PRIME Mrtf DOWNSTREAM Mrtf
3R	12889748	3R_12889748_SNP [dm3] 3R_17064026_SNP [dm6]	A	T	3.412e^-4	0.674	INTRON Dad
2R	9586920	2R_9586920_SNP [dm3] 2R_13699415_SNP [dm6]	C	T	3.414e^-4	0.674	INTRON fas
2L	16997155	2L_16997155_SNP [dm3] 2L_16997155_SNP [dm6]	T	A	3.417e^-4	0.674	INTERGENIC
2L	9379921	2L_9379921_SNP [dm3] 2L_9379921_SNP [dm6]	C	T	3.422e^-4	0.674	SYNONYMOUS_CODING Shawl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21902691	3R_21902691_SNP [dm3] 3R_26076969_SNP [dm6]	A	C	3.424e^-4	0.674	UTR_3_PRIME dys
2L	6227821	2L_6227821_INS [dm3] 2L_6227821_INS [dm6]	A	ATA	3.432e^-4	0.674	DOWNSTREAM Ugt37b1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	23178220	3R_23178220_DEL [dm3] 3R_27352498_DEL [dm6]	CG	C	3.433e^-4	0.674	INTRON CG42534
3R	12602077	3R_12602077_SNP [dm3] 3R_16776355_SNP [dm6]	G	A	3.440e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9635460	2R_9635460_SNP [dm3] 2R_13747955_SNP [dm6]	C	A	3.448e^-4	0.674	UTR_3_PRIME fas
3R	15024138	3R_15024138_SNP [dm3] 3R_19198416_SNP [dm6]	C	A	3.451e^-4	0.674	INTRON CG31475
2L	1863789	2L_1863789_SNP [dm3] 2L_1863789_SNP [dm6]	G	C	3.452e^-4	0.674	INTRON CG31663
2R	4869871	2R_4869871_SNP [dm3] 2R_8982366_SNP [dm6]	G	A	3.452e^-4	0.674	INTRON CG8213
3R	21280106	3R_21280106_SNP [dm3] 3R_25454384_SNP [dm6]	A	G	3.458e^-4	0.674	INTRON Fur1
2L	13114460	2L_13114460_SNP [dm3] 2L_13114460_SNP [dm6]	A	G	3.462e^-4	0.674	INTERGENIC
2R	16584123	2R_16584123_SNP [dm3] 2R_20696618_SNP [dm6]	G	C	3.463e^-4	0.674	INTERGENIC
3L	4870727	3L_4870727_SNP [dm3] 3L_4870727_SNP [dm6]	T	C	3.463e^-4	0.674	SYNONYMOUS_CODING CG17150
X	11054191	X_11054191_SNP [dm3] X_11160158_SNP [dm6]	C	T	3.466e^-4	0.674	UPSTREAM Dlic & 1 other INTRON Dlic
2L	20223530	2L_20223530_SNP [dm3] 2L_20223530_SNP [dm6]	T	C	3.468e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8692205	X_8692205_SNP [dm3] X_8798172_SNP [dm6]	G	C	3.468e^-4	0.674	INTRON Lim1
X	15446229	X_15446229_SNP [dm3] X_15552196_SNP [dm6]	T	A	3.473e^-4	0.674	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	6619876	X_6619876_SNP [dm3] X_6725843_SNP [dm6]	T	G	3.474e^-4	0.674	INTRON CG3168	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20341609	2L_20341609_INS [dm3] 2L_20341609_INS [dm6]	C	CTTG	3.477e^-4	0.674	UPSTREAM spir INTRON spir	TF binding site mE1_TFBS_cad
2R	4813184	2R_4813184_SNP [dm3] 2R_8925679_SNP [dm6]	C	A	3.485e^-4	0.674	UTR_5_PRIME CG8237 DOWNSTREAM CG8243	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	25446312	3R_25446312_SNP [dm3] 3R_29620590_SNP [dm6]	A	G	3.485e^-4	0.674	UTR_3_PRIME CG1907	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	6493175	X_6493175_SNP [dm3] X_6599142_SNP [dm6]	T	C	3.487e^-4	0.674	NON_SYNONYMOUS_CODING APC7 UPSTREAM pigs	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17538058	3R_17538058_DEL [dm3] 3R_21712336_DEL [dm6]	AGGTA	A	3.489e^-4	0.674	INTRON CG31176
2L	12581322	2L_12581322_SNP [dm3] 2L_12581322_SNP [dm6]	A	T	3.491e^-4	0.674	UPSTREAM CR44596 INTERGENIC
2L	16550798	2L_16550798_SNP [dm3] 2L_16550798_SNP [dm6]	C	A	3.502e^-4	0.675	UPSTREAM CG5968 INTRON CG42389
2L	10819507	2L_10819507_SNP [dm3] 2L_10819507_SNP [dm6]	G	A	3.525e^-4	0.679	NON_SYNONYMOUS_CODING CG6508 INTRON Nos	TF binding site mE1_TFBS_cad
2L	19889009	2L_19889009_SNP [dm3] 2L_19889009_SNP [dm6]	T	C	3.536e^-4	0.68	INTRON sick
3L	4871889	3L_4871889_SNP [dm3] 3L_4871889_SNP [dm6]	T	C	3.539e^-4	0.68	INTRON CG17150	TF binding site mE1_TFBS_HSA
3R	17080807	3R_17080807_SNP [dm3] 3R_21255085_SNP [dm6]	G	T	3.539e^-4	0.68	INTRON ETHR
X	10614945	X_10614945_DEL [dm3] X_10720912_DEL [dm6]	TA	T	3.545e^-4	0.68	INTRON CG32676	TF binding site mE1_TFBS_sens
2R	9755428	2R_9755428_SNP [dm3] 2R_13867923_SNP [dm6]	T	C	3.552e^-4	0.68	INTRON shot
3L	6563469	3L_6563469_SNP [dm3] 3L_6570369_SNP [dm6]	C	T	3.554e^-4	0.68	INTRON CG18769 & 1 other
4	464446	4_464446_INS [dm3] 4_443820_INS [dm6]	G	GATTAG	3.565e^-4	0.68	UTR_5_PRIME lgs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	7159337	2L_7159337_SNP [dm3] 2L_7159337_SNP [dm6]	C	T	3.566e^-4	0.68	INTERGENIC
X	14610998	X_14610998_SNP [dm3] X_14716965_SNP [dm6]	T	A	3.567e^-4	0.68	INTRON NetB
2R	3776369	2R_3776369_SNP [dm3] 2R_7888864_SNP [dm6]	A	T	3.568e^-4	0.68	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	19148882	3R_19148882_SNP [dm3] 3R_23323160_SNP [dm6]	G	A	3.569e^-4	0.68	INTRON pnt
3R	23646768	3R_23646768_SNP [dm3] 3R_27821046_SNP [dm6]	T	C	3.579e^-4	0.681	INTRON CG34353
4	1021785	4_1021785_SNP [dm3] 4_1001159_SNP [dm6]	C	T	3.582e^-4	0.681	INTRON toy	transposable element FlyBase
3R	9590269	3R_9590269_SNP [dm3] 3R_13764547_SNP [dm6]	T	G	3.588e^-4	0.681	UTR_3_PRIME CG34383
2R	19128011	2R_19128011_SNP [dm3] 2R_23240488_SNP [dm6]	T	C	3.595e^-4	0.682	INTERGENIC
2L	18831493	2L_18831493_SNP [dm3] 2L_18831493_SNP [dm6]	C	A	3.601e^-4	0.682	UPSTREAM CG17597 INTRON ScpX	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	20260035	2L_20260035_SNP [dm3] 2L_20260035_SNP [dm6]	A	T	3.608e^-4	0.682	INTERGENIC
3L	2604715	3L_2604715_SNP [dm3] 3L_2604715_SNP [dm6]	C	T	3.612e^-4	0.682	INTRON Pxn	TF binding site mE1_TFBS_chinmo
2R	19390179	2R_19390179_SNP [dm3] 2R_23502656_SNP [dm6]	G	A	3.619e^-4	0.682	UPSTREAM CG13559 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	16981917	3R_16981917_SNP [dm3] 3R_21156195_SNP [dm6]	A	T	3.619e^-4	0.682	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	26834036	3R_26834036_SNP [dm3] 3R_31008314_SNP [dm6]	C	A	3.621e^-4	0.682	INTRON 5-HT7
2R	16582973	2R_16582973_SNP [dm3] 2R_20695468_SNP [dm6]	C	T	3.621e^-4	0.682	INTERGENIC
2L	12581391	2L_12581391_SNP [dm3] 2L_12581391_SNP [dm6]	G	T	3.632e^-4	0.683	UPSTREAM CR44596 INTERGENIC
2L	11953724	2L_11953724_SNP [dm3] 2L_11953724_SNP [dm6]	G	C	3.633e^-4	0.683	UPSTREAM bft EXON CR43314
3L	13181136	3L_13181136_INS [dm3] 3L_13188036_INS [dm6]	T	TGTTT	3.636e^-4	0.683	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3R	26472551	3R_26472551_SNP [dm3] 3R_30646829_SNP [dm6]	C	T	3.640e^-4	0.683	NON_SYNONYMOUS_CODING PH4alphaPV UPSTREAM CG31013	TF binding site mE1_TFBS_HSA

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.573e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.08049
In_3R_K	0.02513

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	5.2882	0.0215
In_3R_K	7.5455	0.023

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2490 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	19030449	3R_19030449_INS [dm3] 3R_23204727_INS [dm6]	G	GTT	3.450e^-7	0.288	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
3L	4876217	3L_4876217_SNP [dm3] 3L_4876217_SNP [dm6]	A	T	3.703e^-7	0.288	INTRON CG17150
3R	19030560	3R_19030560_SNP [dm3] 3R_23204838_SNP [dm6]	T	G	8.144e^-7	0.288	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
3L	16388169	3L_16388169_SNP [dm3] 3L_16395069_SNP [dm6]	T	C	8.681e^-7	0.288	SYNONYMOUS_CODING Grp INTRON CG44836	TF binding site mE1_TFBS_HSA
3L	4871873	3L_4871873_DEL [dm3] 3L_4871873_DEL [dm6]	TC	T	1.088e^-6	0.288	INTRON CG17150	TF binding site mE1_TFBS_HSA
3L	4880296	3L_4880296_SNP [dm3] 3L_4880296_SNP [dm6]	T	C	1.108e^-6	0.288	INTRON CG17150
3R	4723832	3R_4723832_DEL [dm3] 3R_8898110_DEL [dm6]	TCTGCAAATCACAAT...	T	1.238e^-6	0.288	INTRON pyd	TF binding site BDTNP1_TFBS_dl
3R	10792401	3R_10792401_SNP [dm3] 3R_14966679_SNP [dm6]	G	A	1.369e^-6	0.288	INTERGENIC
3L	4871845	3L_4871845_SNP [dm3] 3L_4871845_SNP [dm6]	G	A	1.381e^-6	0.288	INTRON CG17150	TF binding site mE1_TFBS_HSA
2R	19982478	2R_19982478_SNP [dm3] 2R_24094955_SNP [dm6]	C	A	2.427e^-6	0.357	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16296713	2L_16296713_SNP [dm3] 2L_16296713_SNP [dm6]	A	G	2.726e^-6	0.357	UTR_3_PRIME Cyp303a1 & 1 other DOWNSTREAM Cyp303a1
2R	4266130	2R_4266130_DEL [dm3] 2R_8378625_DEL [dm6]	TGTAGT	AAATA	2.886e^-6	0.357	INTRON pdm3
3R	10156944	3R_10156944_SNP [dm3] 3R_14331222_SNP [dm6]	G	C	3.081e^-6	0.357	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	10156929	3R_10156929_SNP [dm3] 3R_14331207_SNP [dm6]	C	T	3.500e^-6	0.357	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	10156930	3R_10156930_SNP [dm3] 3R_14331208_SNP [dm6]	C	A	3.500e^-6	0.357	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	17032067	3L_17032067_SNP [dm3] 3L_17038967_SNP [dm6]	T	C	3.606e^-6	0.357	INTRON scaf6	TF binding site mE1_TFBS_cad
2R	5078130	2R_5078130_SNP [dm3] 2R_9190625_SNP [dm6]	T	C	4.006e^-6	0.357	UPSTREAM CG8026 INTRON CG8026 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19030623	3R_19030623_SNP [dm3] 3R_23204901_SNP [dm6]	C	A	4.036e^-6	0.357	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
2R	5528117	2R_5528117_SNP [dm3] 2R_9640612_SNP [dm6]	G	T	4.083e^-6	0.357	INTRON Mmp2
2R	19972748	2R_19972748_SNP [dm3] 2R_24085225_SNP [dm6]	G	A	4.143e^-6	0.357	SYNONYMOUS_CODING CG16786	TF binding site mE1_TFBS_sens
3R	10156910	3R_10156910_INS [dm3] 3R_14331188_INS [dm6]	T	TGTAT	4.391e^-6	0.357	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	17235656	3R_17235656_SNP [dm3] 3R_21409934_SNP [dm6]	A	C	4.726e^-6	0.357	DOWNSTREAM lbl & 1 other INTERGENIC
3R	10156932	3R_10156932_INS [dm3] 3R_14331210_INS [dm6]	G	GTAT	5.093e^-6	0.357	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	10156948	3R_10156948_SNP [dm3] 3R_14331226_SNP [dm6]	C	T	5.248e^-6	0.357	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	10156939	3R_10156939_INS [dm3] 3R_14331217_INS [dm6]	A	ATGTACATATATCATTTTTT...	5.340e^-6	0.357	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	10156950	3R_10156950_SNP [dm3] 3R_14331228_SNP [dm6]	G	C	5.340e^-6	0.357	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	10156952	3R_10156952_INS [dm3] 3R_14331230_INS [dm6]	G	GATTAAAT	5.340e^-6	0.357	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4956397	2L_4956397_DEL [dm3] 2L_4956397_DEL [dm6]	CAT	C	6.043e^-6	0.357	INTRON Marcal1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13142019	2L_13142019_SNP [dm3] 2L_13142019_SNP [dm6]	C	T	6.145e^-6	0.357	DOWNSTREAM CG9928 INTERGENIC
2L	20437146	2L_20437146_SNP [dm3] 2L_20437146_SNP [dm6]	G	A	6.443e^-6	0.357	DOWNSTREAM CR43607 INTRON CG31688	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4871887	3L_4871887_SNP [dm3] 3L_4871887_SNP [dm6]	T	C	7.176e^-6	0.357	INTRON CG17150	TF binding site mE1_TFBS_HSA
3R	19030577	3R_19030577_SNP [dm3] 3R_23204855_SNP [dm6]	A	C	7.200e^-6	0.357	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
2L	20343221	2L_20343221_SNP [dm3] 2L_20343221_SNP [dm6]	A	T	7.278e^-6	0.357	INTRON spir
3R	27236086	3R_27236086_SNP [dm3] 3R_31410364_SNP [dm6]	A	T	7.286e^-6	0.357	UTR_5_PRIME Gprk2 INTRON Gprk2
3R	10156946	3R_10156946_SNP [dm3] 3R_14331224_SNP [dm6]	T	A	7.462e^-6	0.357	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	10156955	3R_10156955_SNP [dm3] 3R_14331233_SNP [dm6]	G	A	7.603e^-6	0.357	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	7392805	2R_7392805_SNP [dm3] 2R_11505300_SNP [dm6]	T	A	7.725e^-6	0.357	INTRON inv
3R	10156937	3R_10156937_SNP [dm3] 3R_14331215_SNP [dm6]	G	A	7.781e^-6	0.357	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	19030580	3R_19030580_INS [dm3] 3R_23204858_INS [dm6]	A	AT	7.845e^-6	0.357	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
2R	20139544	2R_20139544_SNP [dm3] 2R_24252021_SNP [dm6]	A	C	7.978e^-6	0.357	UPSTREAM Ir60a DOWNSTREAM snoRNA:Me18S-A1597 INTRON nord
3R	26805775	3R_26805775_SNP [dm3] 3R_30980053_SNP [dm6]	G	A	8.039e^-6	0.357	INTRON 5-HT7
2R	20138957	2R_20138957_SNP [dm3] 2R_24251434_SNP [dm6]	A	C	8.161e^-6	0.357	UPSTREAM Ir60a DOWNSTREAM snoRNA:Me18S-A1597 INTRON nord
3L	4192128	3L_4192128_SNP [dm3] 3L_4192128_SNP [dm6]	C	T	8.352e^-6	0.357	INTRON CG18675 & 1 other
X	12934119	X_12934119_SNP [dm3] X_13040086_SNP [dm6]	C	T	8.485e^-6	0.357	INTRON rad	TF binding site mE1_TFBS_HSA
2R	12460216	2R_12460216_INS [dm3] 2R_16572711_INS [dm6]	A	AA	8.669e^-6	0.357	INTRON CG4927
3R	23516107	3R_23516107_SNP [dm3] 3R_27690385_SNP [dm6]	T	C	8.760e^-6	0.357	INTRON CG12880	TF binding site mE1_TFBS_chinmo
2R	19917770	2R_19917770_SNP [dm3] 2R_24030247_SNP [dm6]	C	T	9.645e^-6	0.382	SYNONYMOUS_CODING CG3163 DOWNSTREAM CG30172	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	4872644	3L_4872644_SNP [dm3] 3L_4872644_SNP [dm6]	C	T	9.949e^-6	0.382	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4871822	3L_4871822_SNP [dm3] 3L_4871822_SNP [dm6]	C	T	1.023e^-5	0.382	INTRON CG17150	TF binding site mE1_TFBS_HSA
3R	10156943	3R_10156943_SNP [dm3] 3R_14331221_SNP [dm6]	C	A	1.056e^-5	0.382	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	4871889	3L_4871889_SNP [dm3] 3L_4871889_SNP [dm6]	T	C	1.064e^-5	0.382	INTRON CG17150	TF binding site mE1_TFBS_HSA
3R	13169991	3R_13169991_SNP [dm3] 3R_17344269_SNP [dm6]	G	A	1.111e^-5	0.382	INTRON beat-IIa
3L	4871912	3L_4871912_SNP [dm3] 3L_4871912_SNP [dm6]	A	G	1.116e^-5	0.382	INTRON CG17150	TF binding site mE1_TFBS_HSA
3L	597491	3L_597491_SNP [dm3] 3L_597491_SNP [dm6]	G	A	1.117e^-5	0.382	SYNONYMOUS_CODING MED14	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4560961	X_4560961_SNP [dm3] X_4666928_SNP [dm6]	T	A	1.119e^-5	0.382	UPSTREAM CG3009 DOWNSTREAM rap INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
X	14583285	X_14583285_SNP [dm3] X_14689252_SNP [dm6]	G	A	1.192e^-5	0.399	UTR_3_PRIME NetB
2R	5020785	2R_5020785_SNP [dm3] 2R_9133280_SNP [dm6]	C	T	1.257e^-5	0.414	NON_SYNONYMOUS_CODING Hydr1 UPSTREAM Hydr1 INTRON Hydr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_sens
3R	19210686	3R_19210686_SNP [dm3] 3R_23384964_SNP [dm6]	A	G	1.304e^-5	0.419	UPSTREAM CG4393 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	27235971	3R_27235971_SNP [dm3] 3R_31410249_SNP [dm6]	A	T	1.324e^-5	0.419	INTRON Gprk2
X	18245824	X_18245824_INS [dm3] X_18351791_INS [dm6]	C	AGA	1.370e^-5	0.419	INTRON CG6123
3R	10156938	3R_10156938_SNP [dm3] 3R_14331216_SNP [dm6]	A	C	1.378e^-5	0.419	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	27235972	3R_27235972_SNP [dm3] 3R_31410250_SNP [dm6]	T	G	1.384e^-5	0.419	INTRON Gprk2
3L	17392984	3L_17392984_SNP [dm3] 3L_17399884_SNP [dm6]	T	A	1.425e^-5	0.424	DOWNSTREAM noe INTRON blot
3R	27235983	3R_27235983_SNP [dm3] 3R_31410261_SNP [dm6]	C	T	1.469e^-5	0.427	INTRON Gprk2
3R	19030436	3R_19030436_SNP [dm3] 3R_23204714_SNP [dm6]	T	C	1.513e^-5	0.427	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
2R	14270930	2R_14270930_SNP [dm3] 2R_18383425_SNP [dm6]	A	T	1.529e^-5	0.427	UPSTREAM IM1 & 1 other INTERGENIC
2R	7392807	2R_7392807_INS [dm3] 2R_11505302_INS [dm6]	T	TT	1.565e^-5	0.427	INTRON inv
3R	9866450	3R_9866450_DEL [dm3] 3R_14040728_DEL [dm6]	TATGTATGAA	CCAGAACGC	1.581e^-5	0.427	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19030584	3R_19030584_SNP [dm3] 3R_23204862_SNP [dm6]	C	T	1.591e^-5	0.427	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
3R	620938	3R_620938_DEL [dm3] 3R_4795216_DEL [dm6]	TT	T	1.672e^-5	0.427	INTRON ctrip	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13142029	2L_13142029_SNP [dm3] 2L_13142029_SNP [dm6]	T	C	1.679e^-5	0.427	DOWNSTREAM CG9928 INTERGENIC
2L	20268713	2L_20268713_SNP [dm3] 2L_20268713_SNP [dm6]	T	C	1.733e^-5	0.427	INTERGENIC
3L	4190303	3L_4190303_SNP [dm3] 3L_4190303_SNP [dm6]	C	T	1.767e^-5	0.427	UTR_5_PRIME tipE INTRON CG18675	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4871832	3L_4871832_SNP [dm3] 3L_4871832_SNP [dm6]	T	G	1.767e^-5	0.427	INTRON CG17150	TF binding site mE1_TFBS_HSA
2R	7040152	2R_7040152_SNP [dm3] 2R_11152647_SNP [dm6]	T	C	1.784e^-5	0.427	INTRON CG13229
3L	15171675	3L_15171675_SNP [dm3] 3L_15178575_SNP [dm6]	G	A	1.793e^-5	0.427	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	569471	3L_569471_SNP [dm3] 3L_569471_SNP [dm6]	G	A	1.800e^-5	0.427	INTRON hipk	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	24931932	3R_24931932_SNP [dm3] 3R_29106210_SNP [dm6]	T	G	1.801e^-5	0.427	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19974129	2R_19974129_SNP [dm3] 2R_24086606_SNP [dm6]	G	T	1.822e^-5	0.427	UTR_5_PRIME snama DOWNSTREAM CG16786	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	19974764	2R_19974764_SNP [dm3] 2R_24087241_SNP [dm6]	T	C	1.822e^-5	0.427	DOWNSTREAM CG16786 INTRON snama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7635267	2R_7635267_SNP [dm3] 2R_11747762_SNP [dm6]	C	T	1.960e^-5	0.445	INTERGENIC
2R	4332470	2R_4332470_SNP [dm3] 2R_8444965_SNP [dm6]	G	T	1.963e^-5	0.445	UPSTREAM mir-986 INTRON Cyp4e2	TF binding site mE1_TFBS_cnc mE1_TFBS_Trl
3L	16201577	3L_16201577_SNP [dm3] 3L_16208477_SNP [dm6]	A	G	2.017e^-5	0.445	INTERGENIC
2R	18670641	2R_18670641_DEL [dm3] 2R_22783136_DEL [dm6]	AAG	A	2.039e^-5	0.445	INTRON CG42260
2R	19984116	2R_19984116_SNP [dm3] 2R_24096593_SNP [dm6]	G	T	2.040e^-5	0.445	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4873509	3L_4873509_SNP [dm3] 3L_4873509_SNP [dm6]	A	T	2.052e^-5	0.445	INTRON CG17150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19983960	2R_19983960_SNP [dm3] 2R_24096437_SNP [dm6]	G	A	2.095e^-5	0.445	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	19030611	3R_19030611_SNP [dm3] 3R_23204889_SNP [dm6]	T	C	2.144e^-5	0.445	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
2R	14268709	2R_14268709_SNP [dm3] 2R_18381204_SNP [dm6]	C	A	2.149e^-5	0.445	DOWNSTREAM CG43202 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13142363	2L_13142363_SNP [dm3] 2L_13142363_SNP [dm6]	G	A	2.156e^-5	0.445	DOWNSTREAM CG9928 & 1 other INTERGENIC
2L	11430010	2L_11430010_DEL [dm3] 2L_11430010_DEL [dm6]	TATAATCAT	T	2.184e^-5	0.445	INTERGENIC
2L	11430025	2L_11430025_SNP [dm3] 2L_11430025_SNP [dm6]	A	C	2.184e^-5	0.445	INTERGENIC
2L	20437153	2L_20437153_SNP [dm3] 2L_20437153_SNP [dm6]	C	G	2.210e^-5	0.446	DOWNSTREAM CR43607 INTRON CG31688	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4723105	3R_4723105_SNP [dm3] 3R_8897383_SNP [dm6]	T	A	2.287e^-5	0.456	INTRON pyd
3L	4189644	3L_4189644_SNP [dm3] 3L_4189644_SNP [dm6]	G	T	2.332e^-5	0.459	INTRON CG18675 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1392230	3L_1392230_SNP [dm3] 3L_1392230_SNP [dm6]	A	T	2.390e^-5	0.459	INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	20552807	2L_20552807_DEL [dm3] 2L_20552807_DEL [dm6]	TT	T	2.416e^-5	0.459	INTERGENIC
2R	7947542	2R_7947542_SNP [dm3] 2R_12060037_SNP [dm6]	T	C	2.450e^-5	0.459	INTRON Drep-3
2L	20132606	2L_20132606_SNP [dm3] 2L_20132606_SNP [dm6]	C	A	2.520e^-5	0.459	INTERGENIC	TF binding site mE1_TFBS_inv
3L	559106	3L_559106_SNP [dm3] 3L_559106_SNP [dm6]	G	A	2.532e^-5	0.459	INTRON hipk
2L	19635301	2L_19635301_INS [dm3] 2L_19635301_INS [dm6]	T	TAT	2.546e^-5	0.459	INTRON Lar
2R	19982493	2R_19982493_SNP [dm3] 2R_24094970_SNP [dm6]	T	C	2.551e^-5	0.459	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20264644	2L_20264644_INS [dm3] 2L_20264644_INS [dm6]	T	TGTTGGAATATACTATTCAA...	2.579e^-5	0.459	UPSTREAM CG17570 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	6805511	2R_6805511_SNP [dm3] 2R_10918006_SNP [dm6]	T	A	2.589e^-5	0.459	INTERGENIC
3L	7769852	3L_7769852_SNP [dm3] 3L_7776752_SNP [dm6]	A	G	2.612e^-5	0.459	DOWNSTREAM CG32369 INTERGENIC	regulatory region REDfly_CRMs
3R	620935	3R_620935_SNP [dm3] 3R_4795213_SNP [dm6]	A	C	2.629e^-5	0.459	INTRON ctrip	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25531759	3R_25531759_SNP [dm3] 3R_29706037_SNP [dm6]	T	A	2.679e^-5	0.459	INTERGENIC
3L	3987713	3L_3987713_SNP [dm3] 3L_3987713_SNP [dm6]	C	T	2.685e^-5	0.459	SYNONYMOUS_CODING scrt	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4741784	3R_4741784_SNP [dm3] 3R_8916062_SNP [dm6]	A	T	2.687e^-5	0.459	INTRON pyd	TF binding site BDTNP1_TFBS_twi
3R	620936	3R_620936_SNP [dm3] 3R_4795214_SNP [dm6]	G	A	2.694e^-5	0.459	INTRON ctrip	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4872896	3L_4872896_SNP [dm3] 3L_4872896_SNP [dm6]	C	T	2.753e^-5	0.461	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4192161	3L_4192161_SNP [dm3] 3L_4192161_SNP [dm6]	A	G	2.755e^-5	0.461	INTRON CG18675 & 1 other
2R	15858356	2R_15858356_SNP [dm3] 2R_19970851_SNP [dm6]	C	A	2.809e^-5	0.466	INTERGENIC
X	3662923	X_3662923_SNP [dm3] X_3768890_SNP [dm6]	T	C	2.849e^-5	0.469	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	8029126	X_8029126_SNP [dm3] X_8135093_SNP [dm6]	G	C	2.885e^-5	0.471	UPSTREAM CG2120 DOWNSTREAM CG10958 INTRON cyr
3R	4741628	3R_4741628_SNP [dm3] 3R_8915906_SNP [dm6]	A	G	2.935e^-5	0.475	INTRON pyd	TF binding site BDTNP1_TFBS_twi
3L	575897	3L_575897_SNP [dm3] 3L_575897_SNP [dm6]	T	C	2.985e^-5	0.479	UTR_3_PRIME hipk
3L	568817	3L_568817_SNP [dm3] 3L_568817_SNP [dm6]	A	T	3.065e^-5	0.485	UPSTREAM hipk INTRON hipk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8589320	2R_8589320_SNP [dm3] 2R_12701815_SNP [dm6]	A	G	3.080e^-5	0.485	DOWNSTREAM wuc INTERGENIC
3R	4743300	3R_4743300_DEL [dm3] 3R_8917578_DEL [dm6]	TCAGCT	T	3.144e^-5	0.487	INTRON pyd	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	24935582	3R_24935582_SNP [dm3] 3R_29109860_SNP [dm6]	A	G	3.169e^-5	0.487	UTR_3_PRIME alpha-Man-Ib DOWNSTREAM CG11873	TF binding site mE1_TFBS_sens
3L	16339657	3L_16339657_SNP [dm3] 3L_16346557_SNP [dm6]	A	T	3.170e^-5	0.487	INTRON CG33257
3L	13796804	3L_13796804_DEL [dm3] 3L_13803704_DEL [dm6]	AA	A	3.190e^-5	0.487	UPSTREAM bru-3 INTERGENIC
3L	540813	3L_540813_SNP [dm3] 3L_540813_SNP [dm6]	T	C	3.221e^-5	0.487	UPSTREAM CG17180 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3L	9231801	3L_9231801_SNP [dm3] 3L_9238701_SNP [dm6]	C	T	3.245e^-5	0.487	INTERGENIC
X	14583209	X_14583209_SNP [dm3] X_14689176_SNP [dm6]	G	T	3.277e^-5	0.488	UTR_3_PRIME NetB
3R	23035381	3R_23035381_SNP [dm3] 3R_27209659_SNP [dm6]	C	A	3.328e^-5	0.492	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4872620	3L_4872620_SNP [dm3] 3L_4872620_SNP [dm6]	T	C	3.433e^-5	0.498	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4719924	3R_4719924_SNP [dm3] 3R_8894202_SNP [dm6]	A	T	3.471e^-5	0.498	INTRON pyd	TF binding site mE1_TFBS_Trl
2R	19976766	2R_19976766_SNP [dm3] 2R_24089243_SNP [dm6]	A	G	3.476e^-5	0.498	NON_SYNONYMOUS_CODING snama
2R	4128528	2R_4128528_SNP [dm3] 2R_8241023_SNP [dm6]	T	C	3.481e^-5	0.498	DOWNSTREAM pnut & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	9251875	3L_9251875_SNP [dm3] 3L_9258775_SNP [dm6]	T	C	3.554e^-5	0.505	INTRON GluRIB
2R	9793047	2R_9793047_SNP [dm3] 2R_13905542_SNP [dm6]	C	A	3.603e^-5	0.505	INTRON shot
2R	15702305	2R_15702305_SNP [dm3] 2R_19814800_SNP [dm6]	A	C	3.611e^-5	0.505	UPSTREAM Obp56h INTERGENIC	regulatory region REDfly_CRMs
3R	8096432	3R_8096432_SNP [dm3] 3R_12270710_SNP [dm6]	T	A	3.732e^-5	0.516	UPSTREAM CG17738 DOWNSTREAM CR44039 INTRON svp
2R	10418022	2R_10418022_SNP [dm3] 2R_14530517_SNP [dm6]	A	T	3.742e^-5	0.516	INTRON ttv
2L	20403587	2L_20403587_SNP [dm3] 2L_20403587_SNP [dm6]	G	T	3.822e^-5	0.518	INTRON CG10947
3L	6307933	3L_6307933_SNP [dm3] 3L_6314833_SNP [dm6]	T	A	3.827e^-5	0.518	INTERGENIC
3R	4741745	3R_4741745_SNP [dm3] 3R_8916023_SNP [dm6]	T	C	3.857e^-5	0.518	INTRON pyd	TF binding site BDTNP1_TFBS_twi
3R	25446311	3R_25446311_SNP [dm3] 3R_29620589_SNP [dm6]	G	C	3.888e^-5	0.518	UTR_3_PRIME CG1907	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25531736	3R_25531736_SNP [dm3] 3R_29706014_SNP [dm6]	A	T	3.912e^-5	0.518	INTERGENIC
2L	13263711	2L_13263711_SNP [dm3] 2L_13263711_SNP [dm6]	C	T	3.919e^-5	0.518	INTRON CG44085
3L	569491	3L_569491_SNP [dm3] 3L_569491_SNP [dm6]	C	A	4.048e^-5	0.531	INTRON hipk	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	19030437	3R_19030437_SNP [dm3] 3R_23204715_SNP [dm6]	C	T	4.124e^-5	0.536	UPSTREAM fzo INTRON cnc	TF binding site mE1_TFBS_cnc
3L	597470	3L_597470_SNP [dm3] 3L_597470_SNP [dm6]	A	C	4.155e^-5	0.536	SYNONYMOUS_CODING MED14	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7769793	3L_7769793_SNP [dm3] 3L_7776693_SNP [dm6]	G	T	4.241e^-5	0.536	DOWNSTREAM CG32369 INTERGENIC	regulatory region REDfly_CRMs
2R	4918794	2R_4918794_SNP [dm3] 2R_9031289_SNP [dm6]	T	A	4.262e^-5	0.536	UPSTREAM CG8170 INTERGENIC
3L	4647814	3L_4647814_SNP [dm3] 3L_4647814_SNP [dm6]	C	T	4.274e^-5	0.536	UPSTREAM CG32238 INTRON axo
3R	7296528	3R_7296528_SNP [dm3] 3R_11470806_SNP [dm6]	T	G	4.286e^-5	0.536	INTERGENIC
2R	10418018	2R_10418018_SNP [dm3] 2R_14530513_SNP [dm6]	A	T	4.338e^-5	0.536	INTRON ttv
3L	3872871	3L_3872871_SNP [dm3] 3L_3872871_SNP [dm6]	A	G	4.365e^-5	0.536	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	17087550	3L_17087550_SNP [dm3] 3L_17094450_SNP [dm6]	T	G	4.399e^-5	0.536	INTRON Rbp6
2R	12633600	2R_12633600_SNP [dm3] 2R_16746095_SNP [dm6]	G	T	4.452e^-5	0.536	UPSTREAM Sfp53D INTRON CG15617	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13141397	2L_13141397_SNP [dm3] 2L_13141397_SNP [dm6]	A	G	4.490e^-5	0.536	INTERGENIC
3R	25727333	3R_25727333_SNP [dm3] 3R_29901611_SNP [dm6]	T	C	4.499e^-5	0.536	INTRON CG31038
2L	20141079	2L_20141079_SNP [dm3] 2L_20141079_SNP [dm6]	T	A	4.534e^-5	0.536	INTERGENIC
2L	11703508	2L_11703508_SNP [dm3] 2L_11703508_SNP [dm6]	G	A	4.566e^-5	0.536	INTERGENIC
2R	4699880	2R_4699880_INS [dm3] 2R_8812375_INS [dm6]	A	AA	4.714e^-5	0.536	INTRON sns	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	559033	3L_559033_SNP [dm3] 3L_559033_SNP [dm6]	G	A	4.735e^-5	0.536	INTRON hipk
2R	14270555	2R_14270555_SNP [dm3] 2R_18383050_SNP [dm6]	C	T	4.801e^-5	0.536	SYNONYMOUS_CODING IM23 UPSTREAM IM1
3L	14372680	3L_14372680_SNP [dm3] 3L_14379580_SNP [dm6]	T	C	4.803e^-5	0.536	INTERGENIC
X	7576375	X_7576375_SNP [dm3] X_7682342_SNP [dm6]	G	A	4.805e^-5	0.536	UTR_3_PRIME CHES-1-like
2L	20294000	2L_20294000_SNP [dm3] 2L_20294000_SNP [dm6]	G	A	4.812e^-5	0.536	UPSTREAM CG12617 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	5933257	3L_5933257_SNP [dm3] 3L_5940157_SNP [dm6]	G	A	4.864e^-5	0.536	INTRON CG33993
3L	542184	3L_542184_SNP [dm3] 3L_542184_SNP [dm6]	A	G	4.881e^-5	0.536	UTR_3_PRIME Cypl UPSTREAM hipk DOWNSTREAM CG17180	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	542217	3L_542217_SNP [dm3] 3L_542217_SNP [dm6]	C	T	4.881e^-5	0.536	UTR_3_PRIME Cypl UPSTREAM hipk DOWNSTREAM CG17180	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	19984341	2R_19984341_SNP [dm3] 2R_24096818_SNP [dm6]	C	T	4.918e^-5	0.536	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	17204336	3L_17204336_DEL [dm3] 3L_17211236_DEL [dm6]	CCTGATTTC	C	4.924e^-5	0.536	INTRON Rbp6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7392814	2R_7392814_SNP [dm3] 2R_11505309_SNP [dm6]	C	T	4.957e^-5	0.536	INTRON inv
3R	25484272	3R_25484272_SNP [dm3] 3R_29658550_SNP [dm6]	G	A	4.972e^-5	0.536	INTRON Dop1R2
3L	19553249	3L_19553249_SNP [dm3] 3L_19560149_SNP [dm6]	A	C	4.976e^-5	0.536	DOWNSTREAM CR44676 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	21030790	3R_21030790_SNP [dm3] 3R_25205068_SNP [dm6]	G	A	4.981e^-5	0.536	INTRON CG13654 & 1 other
2R	4836972	2R_4836972_SNP [dm3] 2R_8949467_SNP [dm6]	G	A	4.984e^-5	0.536	DOWNSTREAM CG8229 INTRON CG8229 & 1 other
3L	121779	3L_121779_SNP [dm3] 3L_121779_SNP [dm6]	T	A	5.080e^-5	0.536	INTERGENIC
2R	7204750	2R_7204750_SNP [dm3] 2R_11317245_SNP [dm6]	T	C	5.091e^-5	0.536	INTRON nompA
3L	4872983	3L_4872983_SNP [dm3] 3L_4872983_SNP [dm6]	G	A	5.118e^-5	0.536	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18670862	2R_18670862_SNP [dm3] 2R_22783357_SNP [dm6]	C	A	5.134e^-5	0.536	UPSTREAM CG30270 INTRON CG42260
2L	20341184	2L_20341184_DEL [dm3] 2L_20341184_DEL [dm6]	CAACTGGC	C	5.138e^-5	0.536	UPSTREAM spir INTRON spir
2L	14757112	2L_14757112_SNP [dm3] 2L_14757112_SNP [dm6]	G	A	5.149e^-5	0.536	INTERGENIC
3L	3350287	3L_3350287_SNP [dm3] 3L_3350287_SNP [dm6]	C	T	5.153e^-5	0.536	SYNONYMOUS_CODING kst INTRON kst	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5465906	3L_5465906_SNP [dm3] 3L_5472806_SNP [dm6]	G	T	5.214e^-5	0.536	INTERGENIC
X	14583241	X_14583241_SNP [dm3] X_14689208_SNP [dm6]	G	A	5.235e^-5	0.536	UTR_3_PRIME NetB
2L	14757111	2L_14757111_SNP [dm3] 2L_14757111_SNP [dm6]	T	C	5.260e^-5	0.536	INTERGENIC
2L	19889009	2L_19889009_SNP [dm3] 2L_19889009_SNP [dm6]	T	C	5.261e^-5	0.536	INTRON sick
X	9240805	X_9240805_SNP [dm3] X_9346772_SNP [dm6]	C	G	5.321e^-5	0.539	INTRON CG34449
3R	25341511	3R_25341511_SNP [dm3] 3R_29515789_SNP [dm6]	A	T	5.489e^-5	0.551	UPSTREAM CG2014 INTRON CG2014	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3L	4873060	3L_4873060_SNP [dm3] 3L_4873060_SNP [dm6]	T	G	5.517e^-5	0.551	INTRON CG17150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4741652	3R_4741652_SNP [dm3] 3R_8915930_SNP [dm6]	G	A	5.524e^-5	0.551	INTRON pyd	TF binding site BDTNP1_TFBS_twi
2L	19895952	2L_19895952_SNP [dm3] 2L_19895952_SNP [dm6]	C	A	5.587e^-5	0.551	UPSTREAM sick INTRON sick	silencer mE1_HDAC_PRE
3R	21030752	3R_21030752_SNP [dm3] 3R_25205030_SNP [dm6]	A	T	5.650e^-5	0.551	INTRON CG13654 & 1 other
2L	20262953	2L_20262953_SNP [dm3] 2L_20262953_SNP [dm6]	T	A	5.660e^-5	0.551	DOWNSTREAM CG17570 INTERGENIC
3L	17394700	3L_17394700_SNP [dm3] 3L_17401600_SNP [dm6]	T	A	5.675e^-5	0.551	UPSTREAM noe INTRON blot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	20552741	2L_20552741_SNP [dm3] 2L_20552741_SNP [dm6]	C	T	5.692e^-5	0.551	INTERGENIC
2L	19888837	2L_19888837_SNP [dm3] 2L_19888837_SNP [dm6]	T	C	5.698e^-5	0.551	INTRON sick	TF binding site mE1_TFBS_chinmo
3L	4188235	3L_4188235_SNP [dm3] 3L_4188235_SNP [dm6]	T	C	5.742e^-5	0.552	UPSTREAM tipE & 1 other INTRON CG18675	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7181632	2R_7181632_SNP [dm3] 2R_11294127_SNP [dm6]	A	G	5.845e^-5	0.556	SYNONYMOUS_CODING CG18336 UPSTREAM dare DOWNSTREAM CG30033 & 1 other	TF binding site mE1_TFBS_cad
X	12936008	X_12936008_SNP [dm3] X_13041975_SNP [dm6]	G	T	5.880e^-5	0.556	INTRON rad
3L	5939364	3L_5939364_SNP [dm3] 3L_5946264_SNP [dm6]	C	T	5.886e^-5	0.556	INTRON CG33993	TF binding site BDTNP1_TFBS_twi
2R	18126974	2R_18126974_SNP [dm3] 2R_22239469_SNP [dm6]	G	A	6.019e^-5	0.556	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	4871916	3L_4871916_SNP [dm3] 3L_4871916_SNP [dm6]	A	G	6.046e^-5	0.556	INTRON CG17150	TF binding site mE1_TFBS_HSA
3L	4192574	3L_4192574_SNP [dm3] 3L_4192574_SNP [dm6]	C	T	6.126e^-5	0.556	UTR_3_PRIME tipE & 1 other
3R	24978494	3R_24978494_SNP [dm3] 3R_29152772_SNP [dm6]	G	A	6.164e^-5	0.556	SYNONYMOUS_CODING Slbp UPSTREAM ligatin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	17235629	3R_17235629_SNP [dm3] 3R_21409907_SNP [dm6]	C	T	6.173e^-5	0.556	UTR_3_PRIME CheB93b DOWNSTREAM lbl
3L	4869918	3L_4869918_SNP [dm3] 3L_4869918_SNP [dm6]	C	T	6.208e^-5	0.556	INTRON CG17150	TF binding site mE1_TFBS_HSA
2R	20138974	2R_20138974_SNP [dm3] 2R_24251451_SNP [dm6]	T	G	6.235e^-5	0.556	UPSTREAM Ir60a DOWNSTREAM snoRNA:Me18S-A1597 INTRON nord
2R	12633477	2R_12633477_SNP [dm3] 2R_16745972_SNP [dm6]	G	A	6.258e^-5	0.556	SYNONYMOUS_CODING CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	14817285	X_14817285_SNP [dm3] X_14923252_SNP [dm6]	A	T	6.286e^-5	0.556	INTRON Flo2 & 1 other	TF binding site mE1_TFBS_Trl
3L	4188315	3L_4188315_SNP [dm3] 3L_4188315_SNP [dm6]	G	A	6.303e^-5	0.556	UPSTREAM tipE & 1 other INTRON CG18675	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6856604	3R_6856604_SNP [dm3] 3R_11030882_SNP [dm6]	T	A	6.310e^-5	0.556	INTRON CG34114
3R	7264921	3R_7264921_SNP [dm3] 3R_11439199_SNP [dm6]	T	A	6.334e^-5	0.556	INTRON CG17230 & 1 other
2L	3380210	2L_3380210_SNP [dm3] 2L_3380210_SNP [dm6]	C	G	6.368e^-5	0.556	INTERGENIC
3R	11533986	3R_11533986_INS [dm3] 3R_15708264_INS [dm6]	A	ACATATGTAAGA...	6.376e^-5	0.556	UTR_3_PRIME CG5404
3R	11469506	3R_11469506_DEL [dm3] 3R_15643784_DEL [dm6]	TTTTT	C	6.380e^-5	0.556	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24983807	3R_24983807_DEL [dm3] 3R_29158085_DEL [dm6]	CTC	C	6.385e^-5	0.556	UPSTREAM CG11897 DOWNSTREAM Rpn2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	20300390	2L_20300390_INS [dm3] 2L_20300390_INS [dm6]	T	TG	6.386e^-5	0.556	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	20243884	2L_20243884_SNP [dm3] 2L_20243884_SNP [dm6]	C	G	6.415e^-5	0.556	INTERGENIC
3R	11515362	3R_11515362_SNP [dm3] 3R_15689640_SNP [dm6]	C	T	6.437e^-5	0.556	UTR_3_PRIME pxb
X	18245828	X_18245828_SNP [dm3] X_18351795_SNP [dm6]	T	C	6.496e^-5	0.556	INTRON CG6123
2R	4356593	2R_4356593_SNP [dm3] 2R_8469088_SNP [dm6]	C	G	6.528e^-5	0.556	UTR_3_PRIME Mal-A7 DOWNSTREAM Mal-A7
3R	19739207	3R_19739207_SNP [dm3] 3R_23913485_SNP [dm6]	A	G	6.534e^-5	0.556	INTRON sba	TF binding site mE1_TFBS_Kr
3R	14338370	3R_14338370_SNP [dm3] 3R_18512648_SNP [dm6]	G	C	6.568e^-5	0.556	INTRON fru
3R	11534122	3R_11534122_SNP [dm3] 3R_15708400_SNP [dm6]	A	G	6.584e^-5	0.556	UTR_3_PRIME CG5404
2R	14271063	2R_14271063_SNP [dm3] 2R_18383558_SNP [dm6]	A	C	6.761e^-5	0.569	UPSTREAM IM1 & 1 other INTERGENIC
3L	4872701	3L_4872701_SNP [dm3] 3L_4872701_SNP [dm6]	A	G	6.804e^-5	0.57	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17392043	3L_17392043_SNP [dm3] 3L_17398943_SNP [dm6]	T	C	6.856e^-5	0.572	INTRON blot
2R	15702303	2R_15702303_SNP [dm3] 2R_19814798_SNP [dm6]	T	C	6.889e^-5	0.572	UPSTREAM Obp56h INTERGENIC	regulatory region REDfly_CRMs
3L	4191650	3L_4191650_SNP [dm3] 3L_4191650_SNP [dm6]	C	T	6.922e^-5	0.572	SYNONYMOUS_CODING tipE INTRON CG18675	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11334539	2L_11334539_DEL [dm3] 2L_11334539_DEL [dm6]	GGG	G	6.990e^-5	0.573	INTERGENIC
2R	19069775	2R_19069775_SNP [dm3] 2R_23182252_SNP [dm6]	G	A	7.024e^-5	0.573	INTRON CG34371	TF binding site mE1_TFBS_cad
2R	4236880	2R_4236880_SNP [dm3] 2R_8349375_SNP [dm6]	A	T	7.027e^-5	0.573	INTRON pdm3
2L	13996948	2L_13996948_SNP [dm3] 2L_13996948_SNP [dm6]	T	C	7.054e^-5	0.573	INTRON rk
2L	20351369	2L_20351369_SNP [dm3] 2L_20351369_SNP [dm6]	G	A	7.123e^-5	0.574	INTRON RtGEF
2L	20225667	2L_20225667_SNP [dm3] 2L_20225667_SNP [dm6]	G	A	7.134e^-5	0.574	INTERGENIC
3R	21743546	3R_21743546_SNP [dm3] 3R_25917824_SNP [dm6]	A	G	7.300e^-5	0.583	SYNONYMOUS_CODING CG42235 DOWNSTREAM CG42235 INTRON CG42235
2L	20067542	2L_20067542_SNP [dm3] 2L_20067542_SNP [dm6]	G	A	7.306e^-5	0.583	INTRON bwa	TF binding site BDTNP1_TFBS_da
3L	10552604	3L_10552604_SNP [dm3] 3L_10559504_SNP [dm6]	T	C	7.419e^-5	0.583	UPSTREAM CG6527 INTRON A2bp1
3L	4870685	3L_4870685_SNP [dm3] 3L_4870685_SNP [dm6]	C	A	7.454e^-5	0.583	SYNONYMOUS_CODING CG17150	TF binding site BDTNP1_TFBS_sna
X	20965383	X_20965383_SNP [dm3] X_21094356_SNP [dm6]	T	C	7.466e^-5	0.583	SYNONYMOUS_CODING stg1 UTR_5_PRIME CG11566	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7693480	2R_7693480_SNP [dm3] 2R_11805975_SNP [dm6]	C	A	7.485e^-5	0.583	INTRON ths
3L	10116661	3L_10116661_SNP [dm3] 3L_10123561_SNP [dm6]	A	T	7.494e^-5	0.583	INTRON dpr6
3L	4189376	3L_4189376_SNP [dm3] 3L_4189376_SNP [dm6]	G	T	7.533e^-5	0.583	INTRON CG18675 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26969625	3R_26969625_SNP [dm3] 3R_31143903_SNP [dm6]	A	G	7.540e^-5	0.583	INTRON Gycbeta100B
3R	27238130	3R_27238130_SNP [dm3] 3R_31412408_SNP [dm6]	A	T	7.583e^-5	0.583	INTRON Gprk2
2R	20138094	2R_20138094_SNP [dm3] 2R_24250571_SNP [dm6]	T	G	7.602e^-5	0.583	NON_SYNONYMOUS_CODING Ir60a UPSTREAM snoRNA:Me18S-A1597 INTRON nord	TF binding site mE1_TFBS_chinmo
3L	104692	3L_104692_SNP [dm3] 3L_104692_SNP [dm6]	C	T	7.643e^-5	0.583	INTERGENIC
2R	19976832	2R_19976832_SNP [dm3] 2R_24089309_SNP [dm6]	G	A	7.703e^-5	0.583	UTR_3_PRIME snama INTRON snama
X	1535232	X_1535232_SNP [dm3] X_1641199_SNP [dm6]	G	A	7.788e^-5	0.583	INTRON Mur2B & 1 other
2R	10105721	2R_10105721_INS [dm3] 2R_14218216_INS [dm6]	G	GCCG	7.871e^-5	0.583	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2L	20379285	2L_20379285_SNP [dm3] 2L_20379285_SNP [dm6]	G	T	7.875e^-5	0.583	SYNONYMOUS_CODING CG16798
3L	4188278	3L_4188278_SNP [dm3] 3L_4188278_SNP [dm6]	T	A	7.884e^-5	0.583	UPSTREAM tipE & 1 other INTRON CG18675	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9251882	3L_9251882_SNP [dm3] 3L_9258782_SNP [dm6]	A	G	7.895e^-5	0.583	INTRON GluRIB
2R	19983763	2R_19983763_SNP [dm3] 2R_24096240_SNP [dm6]	G	T	7.906e^-5	0.583	NON_SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	14583310	X_14583310_SNP [dm3] X_14689277_SNP [dm6]	C	T	7.908e^-5	0.583	UTR_3_PRIME NetB
2L	18910259	2L_18910259_SNP [dm3] 2L_18910259_SNP [dm6]	C	A	7.909e^-5	0.583	INTERGENIC
2L	4956395	2L_4956395_SNP [dm3] 2L_4956395_SNP [dm6]	A	G	7.921e^-5	0.583	INTRON Marcal1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10116645	3L_10116645_SNP [dm3] 3L_10123545_SNP [dm6]	C	A	7.989e^-5	0.585	INTRON dpr6
3L	4189928	3L_4189928_SNP [dm3] 3L_4189928_SNP [dm6]	C	G	8.015e^-5	0.585	UTR_5_PRIME tipE INTRON CG18675	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	145656	3L_145656_SNP [dm3] 3L_145656_SNP [dm6]	C	T	8.093e^-5	0.586	UTR_3_PRIME Pdk1 UPSTREAM CG6845 DOWNSTREAM Pdk1
3L	549074	3L_549074_SNP [dm3] 3L_549074_SNP [dm6]	T	C	8.096e^-5	0.586	INTRON hipk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	569508	3L_569508_SNP [dm3] 3L_569508_SNP [dm6]	G	T	8.228e^-5	0.594	INTRON hipk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	11533984	3R_11533984_SNP [dm3] 3R_15708262_SNP [dm6]	G	C	8.513e^-5	0.612	UTR_3_PRIME CG5404
3R	11776341	3R_11776341_SNP [dm3] 3R_15950619_SNP [dm6]	T	C	8.601e^-5	0.614	SPLICE_SITE_REGION CG31088 INTRON Sap47 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10820004	3R_10820004_SNP [dm3] 3R_14994282_SNP [dm6]	C	T	8.605e^-5	0.614	INTERGENIC
X	8714909	X_8714909_DEL [dm3] X_8820876_DEL [dm6]	CC	C	8.643e^-5	0.614	INTERGENIC
3L	549521	3L_549521_SNP [dm3] 3L_549521_SNP [dm6]	C	A	8.699e^-5	0.614	INTRON hipk	TF binding site BDTNP1_TFBS_dl
3L	17392247	3L_17392247_SNP [dm3] 3L_17399147_SNP [dm6]	A	G	8.727e^-5	0.614	INTRON blot
2R	3847748	2R_3847748_SNP [dm3] 2R_7960243_SNP [dm6]	C	T	8.764e^-5	0.614	UTR_3_PRIME Sep5 UPSTREAM CG2915	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14322783	2R_14322783_SNP [dm3] 2R_18435278_SNP [dm6]	G	T	8.767e^-5	0.614	INTRON CG30118	TF binding site BDTNP1_TFBS_twi
2L	17116482	2L_17116482_INS [dm3] 2L_17116482_INS [dm6]	T	TATAGAT	8.808e^-5	0.614	INTERGENIC
2L	21109695	2L_21109695_SNP [dm3] 2L_21109695_SNP [dm6]	A	G	8.910e^-5	0.616	INTRON Nhe2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	4723715	3R_4723715_SNP [dm3] 3R_8897993_SNP [dm6]	C	T	8.921e^-5	0.616	INTRON pyd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10496188	3R_10496188_SNP [dm3] 3R_14670466_SNP [dm6]	C	T	8.934e^-5	0.616	INTRON Meltrin	TF binding site mE1_TFBS_cad
3R	23997363	3R_23997363_SNP [dm3] 3R_28171641_SNP [dm6]	G	T	9.059e^-5	0.62	INTRON CG34354
3L	7169398	3L_7169398_SNP [dm3] 3L_7176298_SNP [dm6]	G	A	9.063e^-5	0.62	INTRON Dscam2
X	5916262	X_5916262_SNP [dm3] X_6022229_SNP [dm6]	T	A	9.084e^-5	0.62	INTERGENIC
3R	4722567	3R_4722567_SNP [dm3] 3R_8896845_SNP [dm6]	A	G	9.129e^-5	0.62	INTRON pyd	TF binding site mE1_TFBS_Trl
3L	1935439	3L_1935439_SNP [dm3] 3L_1935439_SNP [dm6]	G	A	9.206e^-5	0.621	SYNONYMOUS_CODING CG5687	TF binding site mE1_TFBS_sens
3R	15920020	3R_15920020_SNP [dm3] 3R_20094298_SNP [dm6]	A	G	9.228e^-5	0.621	INTERGENIC
2R	3116410	2R_3116410_SNP [dm3] 2R_7228905_SNP [dm6]	C	T	9.237e^-5	0.621	INTERGENIC
3R	10146940	3R_10146940_SNP [dm3] 3R_14321218_SNP [dm6]	C	T	9.289e^-5	0.621	UTR_3_PRIME Afti DOWNSTREAM Afti & 1 other
3L	540828	3L_540828_SNP [dm3] 3L_540828_SNP [dm6]	T	A	9.301e^-5	0.621	UPSTREAM CG17180 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3R	11533971	3R_11533971_SNP [dm3] 3R_15708249_SNP [dm6]	T	C	9.336e^-5	0.621	UTR_3_PRIME CG5404
3L	559124	3L_559124_SNP [dm3] 3L_559124_SNP [dm6]	T	A	9.379e^-5	0.622	INTRON hipk
2L	4956360	2L_4956360_SNP [dm3] 2L_4956360_SNP [dm6]	C	T	9.505e^-5	0.626	INTRON Marcal1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25127538	3R_25127538_DEL [dm3] 3R_29301816_DEL [dm6]	TCTGTTTTCTGAATT...	T	9.598e^-5	0.626	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11534125	3R_11534125_SNP [dm3] 3R_15708403_SNP [dm6]	C	T	9.618e^-5	0.626	UTR_3_PRIME CG5404
2L	20313551	2L_20313551_SNP [dm3] 2L_20313551_SNP [dm6]	G	T	9.619e^-5	0.626	INTRON spir
3L	15019674	3L_15019674_SNP [dm3] 3L_15026574_SNP [dm6]	G	A	9.626e^-5	0.626	INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl
X	22181142	X_22181142_SNP [dm3] X_22779306_SNP [dm6]	T	C	9.653e^-5	0.626	INTRON CR44997	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23518045	3R_23518045_SNP [dm3] 3R_27692323_SNP [dm6]	T	C	9.682e^-5	0.626	UTR_3_PRIME CG12880
3L	7629777	3L_7629777_SNP [dm3] 3L_7636677_SNP [dm6]	C	G	9.747e^-5	0.628	NON_SYNONYMOUS_CODING CG33275	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5192592	3R_5192592_SNP [dm3] 3R_9366870_SNP [dm6]	A	T	9.772e^-5	0.628	DOWNSTREAM FER INTRON CG8129
3R	25481882	3R_25481882_SNP [dm3] 3R_29656160_SNP [dm6]	G	A	9.849e^-5	0.631	INTRON Dop1R2
3L	22171534	3L_22171534_DEL [dm3] 3L_22178434_DEL [dm6]	GTT	G	9.977e^-5	0.631	INTRON olf413
2L	12617280	2L_12617280_SNP [dm3] 2L_12617280_SNP [dm6]	C	A	1.000e^-4	0.631	INTRON Ref2 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10417996	2R_10417996_DEL [dm3] 2R_14530491_DEL [dm6]	TCATATTCTTAA...	T	1.001e^-4	0.631	INTRON ttv
2R	15824896	2R_15824896_SNP [dm3] 2R_19937391_SNP [dm6]	C	T	1.006e^-4	0.631	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4872770	3L_4872770_SNP [dm3] 3L_4872770_SNP [dm6]	C	G	1.011e^-4	0.631	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4188151	3L_4188151_SNP [dm3] 3L_4188151_SNP [dm6]	G	A	1.012e^-4	0.631	UPSTREAM tipE & 1 other INTRON CG18675	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22800205	3R_22800205_SNP [dm3] 3R_26974483_SNP [dm6]	C	T	1.012e^-4	0.631	SYNONYMOUS_CODING CG5521
3L	5909878	3L_5909878_SNP [dm3] 3L_5916778_SNP [dm6]	G	C	1.016e^-4	0.631	INTRON CG13288
3R	24975470	3R_24975470_SNP [dm3] 3R_29149748_SNP [dm6]	C	G	1.018e^-4	0.631	UTR_3_PRIME Pglym78 DOWNSTREAM ligatin	TF binding site mE1_TFBS_chinmo
3L	5916850	3L_5916850_SNP [dm3] 3L_5923750_SNP [dm6]	T	C	1.019e^-4	0.631	UPSTREAM Vap-33B DOWNSTREAM CG32407 INTERGENIC	TF binding site mE1_TFBS_cad
3L	7769870	3L_7769870_SNP [dm3] 3L_7776770_SNP [dm6]	C	T	1.035e^-4	0.631	DOWNSTREAM CG32369 INTERGENIC	regulatory region REDfly_CRMs
3R	21376844	3R_21376844_SNP [dm3] 3R_25551122_SNP [dm6]	A	G	1.036e^-4	0.631	INTRON msi
3R	4743637	3R_4743637_SNP [dm3] 3R_8917915_SNP [dm6]	T	C	1.040e^-4	0.631	INTRON pyd
2L	857932	2L_857932_SNP [dm3] 2L_857932_SNP [dm6]	T	G	1.044e^-4	0.631	DOWNSTREAM mir-375 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	8569315	3R_8569315_SNP [dm3] 3R_12743593_SNP [dm6]	T	C	1.047e^-4	0.631	SYNONYMOUS_CODING CG5999
3R	4741426	3R_4741426_INS [dm3] 3R_8915704_INS [dm6]	A	AA	1.048e^-4	0.631	INTRON pyd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10418031	2R_10418031_SNP [dm3] 2R_14530526_SNP [dm6]	G	T	1.048e^-4	0.631	INTRON ttv
3R	25446312	3R_25446312_SNP [dm3] 3R_29620590_SNP [dm6]	A	G	1.049e^-4	0.631	UTR_3_PRIME CG1907	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	18263625	3R_18263625_SNP [dm3] 3R_22437903_SNP [dm6]	A	G	1.050e^-4	0.631	INTERGENIC
2R	3848480	2R_3848480_SNP [dm3] 2R_7960975_SNP [dm6]	G	C	1.054e^-4	0.631	SYNONYMOUS_CODING Sep5 UPSTREAM CG2915	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	542220	3L_542220_SNP [dm3] 3L_542220_SNP [dm6]	C	A	1.056e^-4	0.631	UTR_3_PRIME Cypl UPSTREAM hipk DOWNSTREAM CG17180	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	14416394	2L_14416394_SNP [dm3] 2L_14416394_SNP [dm6]	G	A	1.062e^-4	0.633	DOWNSTREAM Pburs INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	2854742	3R_2854742_SNP [dm3] 3R_7029020_SNP [dm6]	A	G	1.079e^-4	0.64	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	4873334	3L_4873334_SNP [dm3] 3L_4873334_SNP [dm6]	C	T	1.085e^-4	0.641	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9863630	3R_9863630_SNP [dm3] 3R_14037908_SNP [dm6]	A	G	1.087e^-4	0.641	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8720187	3R_8720187_SNP [dm3] 3R_12894465_SNP [dm6]	A	C	1.097e^-4	0.643	INTRON CR33929
3R	17769455	3R_17769455_SNP [dm3] 3R_21943733_SNP [dm6]	A	C	1.100e^-4	0.643	INTERGENIC
3L	559135	3L_559135_SNP [dm3] 3L_559135_SNP [dm6]	A	G	1.102e^-4	0.643	INTRON hipk
3R	17235690	3R_17235690_INS [dm3] 3R_21409968_INS [dm6]	T	TGAATGGTTTACGATTATTC...	1.106e^-4	0.643	DOWNSTREAM lbl & 1 other INTERGENIC
3R	20553405	3R_20553405_SNP [dm3] 3R_24727683_SNP [dm6]	T	A	1.107e^-4	0.643	INTRON tok	TF binding site BDTNP1_TFBS_dl
3R	18607624	3R_18607624_SNP [dm3] 3R_22781902_SNP [dm6]	A	G	1.113e^-4	0.645	UTR_5_PRIME CG7029 UPSTREAM CR43654 INTRON CG7029	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	12822073	3L_12822073_DEL [dm3] 3L_12828973_DEL [dm6]	TTC	T	1.123e^-4	0.648	INTRON CG10960
X	12331677	X_12331677_SNP [dm3] X_12437644_SNP [dm6]	A	T	1.132e^-4	0.651	INTRON Pkcdelta
3L	569463	3L_569463_SNP [dm3] 3L_569463_SNP [dm6]	C	T	1.137e^-4	0.651	INTRON hipk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	21402283	3R_21402283_SNP [dm3] 3R_25576561_SNP [dm6]	A	G	1.138e^-4	0.651	INTRON msi
X	14094268	X_14094268_SNP [dm3] X_14200235_SNP [dm6]	C	A	1.151e^-4	0.655	UTR_5_PRIME CG11590 DOWNSTREAM mir-4917 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
3R	13803388	3R_13803388_SNP [dm3] 3R_17977666_SNP [dm6]	A	T	1.158e^-4	0.655	INTRON cpo
3L	568822	3L_568822_SNP [dm3] 3L_568822_SNP [dm6]	T	A	1.163e^-4	0.655	UPSTREAM hipk INTRON hipk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5506199	2L_5506199_SNP [dm3] 2L_5506199_SNP [dm6]	G	A	1.163e^-4	0.655	INTERGENIC
3L	18267558	3L_18267558_SNP [dm3] 3L_18274458_SNP [dm6]	T	C	1.166e^-4	0.655	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	18002008	3R_18002008_SNP [dm3] 3R_22176286_SNP [dm6]	A	T	1.174e^-4	0.655	INTRON SKIP
2R	7219832	2R_7219832_SNP [dm3] 2R_11332327_SNP [dm6]	G	T	1.179e^-4	0.655	SYNONYMOUS_CODING sha
2L	20223364	2L_20223364_SNP [dm3] 2L_20223364_SNP [dm6]	C	G	1.191e^-4	0.655	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18851687	2R_18851687_SNP [dm3] 2R_22964164_SNP [dm6]	T	G	1.194e^-4	0.655	INTERGENIC
3L	10454556	3L_10454556_SNP [dm3] 3L_10461456_SNP [dm6]	T	A	1.194e^-4	0.655	NON_SYNONYMOUS_CODING Gem3
2L	10790968	2L_10790968_SNP [dm3] 2L_10790968_SNP [dm6]	G	C	1.197e^-4	0.655	UTR_3_PRIME CG31870 DOWNSTREAM CG31870 INTRON CG31869
3L	21968394	3L_21968394_SNP [dm3] 3L_21975294_SNP [dm6]	C	A	1.206e^-4	0.655	INTRON CG7470
2R	20689422	2R_20689422_SNP [dm3] 2R_24801899_SNP [dm6]	A	G	1.213e^-4	0.655	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	869258	3L_869258_SNP [dm3] 3L_869258_SNP [dm6]	G	T	1.219e^-4	0.655	NON_SYNONYMOUS_CODING CG12502	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19978833	2R_19978833_SNP [dm3] 2R_24091310_SNP [dm6]	G	A	1.220e^-4	0.655	SYNONYMOUS_CODING snama DOWNSTREAM gek
3R	8099075	3R_8099075_SNP [dm3] 3R_12273353_SNP [dm6]	T	A	1.221e^-4	0.655	SYNONYMOUS_CODING Sfp87B INTRON svp
3R	5192668	3R_5192668_SNP [dm3] 3R_9366946_SNP [dm6]	T	C	1.222e^-4	0.655	SYNONYMOUS_CODING CG8129 DOWNSTREAM FER
3R	18945930	3R_18945930_SNP [dm3] 3R_23120208_SNP [dm6]	C	T	1.229e^-4	0.655	INTRON CenB1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	4872506	3L_4872506_SNP [dm3] 3L_4872506_SNP [dm6]	A	G	1.231e^-4	0.655	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8569309	3R_8569309_SNP [dm3] 3R_12743587_SNP [dm6]	G	T	1.231e^-4	0.655	SYNONYMOUS_CODING CG5999
3R	11534137	3R_11534137_SNP [dm3] 3R_15708415_SNP [dm6]	A	G	1.238e^-4	0.655	UTR_3_PRIME CG5404
2R	8898193	2R_8898193_SNP [dm3] 2R_13010688_SNP [dm6]	A	T	1.245e^-4	0.655	INTERGENIC
3L	14540312	3L_14540312_SNP [dm3] 3L_14547212_SNP [dm6]	A	G	1.245e^-4	0.655	SYNONYMOUS_CODING CG9238	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	4332903	2R_4332903_SNP [dm3] 2R_8445398_SNP [dm6]	A	G	1.247e^-4	0.655	SYNONYMOUS_CODING Cyp4e2 DOWNSTREAM mir-986
3R	18524225	3R_18524225_SNP [dm3] 3R_22698503_SNP [dm6]	C	T	1.254e^-4	0.655	SYNONYMOUS_CODING Cyp6d4 DOWNSTREAM cd	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	22719064	3R_22719064_INS [dm3] 3R_26893342_INS [dm6]	C	CC	1.255e^-4	0.655	INTRON T48	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	4716939	2R_4716939_SNP [dm3] 2R_8829434_SNP [dm6]	G	A	1.261e^-4	0.655	INTRON sns	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11703405	2L_11703405_SNP [dm3] 2L_11703405_SNP [dm6]	T	A	1.273e^-4	0.655	INTERGENIC
2L	20300346	2L_20300346_SNP [dm3] 2L_20300346_SNP [dm6]	A	C	1.273e^-4	0.655	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	20837544	X_20837544_SNP [dm3] X_20966517_SNP [dm6]	G	T	1.275e^-4	0.655	INTERGENIC
2R	19975004	2R_19975004_SNP [dm3] 2R_24087481_SNP [dm6]	G	C	1.278e^-4	0.655	INTRON snama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	1726462	3L_1726462_SNP [dm3] 3L_1726462_SNP [dm6]	A	C	1.279e^-4	0.655	DOWNSTREAM CG12035 INTRON drpr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3R	26074686	3R_26074686_SNP [dm3] 3R_30248964_SNP [dm6]	A	T	1.282e^-4	0.655	UPSTREAM tRNA:CR31383 & 2 others INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	26076477	3R_26076477_SNP [dm3] 3R_30250755_SNP [dm6]	C	A	1.284e^-4	0.655	UPSTREAM CG9682 DOWNSTREAM CG34299 INTERGENIC
3R	13682880	3R_13682880_SNP [dm3] 3R_17857158_SNP [dm6]	T	G	1.287e^-4	0.655	INTRON tinc
3L	10116662	3L_10116662_SNP [dm3] 3L_10123562_SNP [dm6]	T	G	1.288e^-4	0.655	INTRON dpr6
3R	14413040	3R_14413040_SNP [dm3] 3R_18587318_SNP [dm6]	G	A	1.290e^-4	0.655	SYNONYMOUS_CODING fray INTRON CG7694	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10417994	2R_10417994_SNP [dm3] 2R_14530489_SNP [dm6]	A	G	1.292e^-4	0.655	INTRON ttv
X	4288243	X_4288243_SNP [dm3] X_4394210_SNP [dm6]	A	G	1.293e^-4	0.655	UPSTREAM CR32773 INTRON CR32773
3R	19010724	3R_19010724_SNP [dm3] 3R_23185002_SNP [dm6]	G	T	1.293e^-4	0.655	UTR_3_PRIME Irk1 DOWNSTREAM cnc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12406730	3L_12406730_SNP [dm3] 3L_12413630_SNP [dm6]	C	G	1.300e^-4	0.655	NON_SYNONYMOUS_CODING CG32103
3L	11431982	3L_11431982_SNP [dm3] 3L_11438882_SNP [dm6]	G	A	1.311e^-4	0.655	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10418029	2R_10418029_SNP [dm3] 2R_14530524_SNP [dm6]	G	C	1.311e^-4	0.655	INTRON ttv
3R	14421334	3R_14421334_SNP [dm3] 3R_18595612_SNP [dm6]	A	T	1.312e^-4	0.655	NON_SYNONYMOUS_CODING CG14304 INTRON qin & 1 other
2L	19647533	2L_19647533_DEL [dm3] 2L_19647533_DEL [dm6]	TAT	T	1.312e^-4	0.655	INTRON Lar
3L	10739474	3L_10739474_SNP [dm3] 3L_10746374_SNP [dm6]	A	T	1.319e^-4	0.655	INTERGENIC
2L	3434632	2L_3434632_SNP [dm3] 2L_3434632_SNP [dm6]	T	C	1.321e^-4	0.655	INTERGENIC
3L	12975356	3L_12975356_SNP [dm3] 3L_12982256_SNP [dm6]	G	A	1.321e^-4	0.655	INTERGENIC
3R	10583388	3R_10583388_SNP [dm3] 3R_14757666_SNP [dm6]	G	A	1.323e^-4	0.655	INTRON jvl
2R	1072733	2R_1072733_SNP [dm3] 2R_5185228_SNP [dm6]	G	A	1.326e^-4	0.655	INTRON Nipped-A	transposable element FlyBase
3R	22800133	3R_22800133_SNP [dm3] 3R_26974411_SNP [dm6]	G	A	1.326e^-4	0.655	SYNONYMOUS_CODING CG5521
2R	10213680	2R_10213680_SNP [dm3] 2R_14326175_SNP [dm6]	A	G	1.330e^-4	0.655	INTRON Shroom	TF binding site mE1_TFBS_inv
2L	20322090	2L_20322090_SNP [dm3] 2L_20322090_SNP [dm6]	A	G	1.334e^-4	0.655	INTRON spir	TF binding site mE1_TFBS_cad
2R	10438044	2R_10438044_SNP [dm3] 2R_14550539_SNP [dm6]	T	A	1.335e^-4	0.655	INTRON ttv
3L	7630115	3L_7630115_SNP [dm3] 3L_7637015_SNP [dm6]	A	T	1.343e^-4	0.655	SYNONYMOUS_CODING CG33275
2R	12633704	2R_12633704_SNP [dm3] 2R_16746199_SNP [dm6]	G	T	1.345e^-4	0.655	SYNONYMOUS_CODING CG15617	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7415248	2R_7415248_SNP [dm3] 2R_11527743_SNP [dm6]	G	A	1.350e^-4	0.655	UTR_5_PRIME en	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	18239886	X_18239886_DEL [dm3] X_18345853_DEL [dm6]	CATTCGTAC	C	1.351e^-4	0.655	INTRON CG6123
3L	4188374	3L_4188374_SNP [dm3] 3L_4188374_SNP [dm6]	T	A	1.353e^-4	0.655	UPSTREAM tipE & 1 other INTRON CG18675	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20983676	3L_20983676_SNP [dm3] 3L_20990576_SNP [dm6]	G	T	1.357e^-4	0.655	INTERGENIC
3L	12822056	3L_12822056_SNP [dm3] 3L_12828956_SNP [dm6]	A	G	1.363e^-4	0.655	INTRON CG10960
3R	1937290	3R_1937290_SNP [dm3] 3R_6111568_SNP [dm6]	C	T	1.363e^-4	0.655	UPSTREAM Obp83ef DOWNSTREAM Obp83g INTERGENIC	regulatory region REDfly_CRMs
3R	4743210	3R_4743210_SNP [dm3] 3R_8917488_SNP [dm6]	C	T	1.375e^-4	0.655	INTRON pyd	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	8731683	3R_8731683_SNP [dm3] 3R_12905961_SNP [dm6]	T	C	1.383e^-4	0.655	INTERGENIC
2L	20298997	2L_20298997_SNP [dm3] 2L_20298997_SNP [dm6]	G	T	1.385e^-4	0.655	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	5781185	3L_5781185_SNP [dm3] 3L_5788085_SNP [dm6]	T	A	1.388e^-4	0.655	INTERGENIC
3L	10197328	3L_10197328_SNP [dm3] 3L_10204228_SNP [dm6]	A	T	1.392e^-4	0.655	INTERGENIC
2L	17357386	2L_17357386_SNP [dm3] 2L_17357386_SNP [dm6]	G	C	1.393e^-4	0.655	INTERGENIC
3R	13906882	3R_13906882_SNP [dm3] 3R_18081160_SNP [dm6]	C	T	1.401e^-4	0.655	SYNONYMOUS_CODING CG14317	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11534130	3R_11534130_DEL [dm3] 3R_15708408_DEL [dm6]	AAG	A	1.401e^-4	0.655	UTR_3_PRIME CG5404
3R	10820021	3R_10820021_SNP [dm3] 3R_14994299_SNP [dm6]	T	A	1.402e^-4	0.655	INTERGENIC
3R	13153951	3R_13153951_SNP [dm3] 3R_17328229_SNP [dm6]	T	C	1.402e^-4	0.655	INTRON beat-IIa
3L	14217752	3L_14217752_SNP [dm3] 3L_14224652_SNP [dm6]	G	C	1.405e^-4	0.655	INTRON nuf
2R	4827844	2R_4827844_SNP [dm3] 2R_8940339_SNP [dm6]	C	A	1.406e^-4	0.655	UPSTREAM CG13748 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	597059	3L_597059_SNP [dm3] 3L_597059_SNP [dm6]	G	A	1.416e^-4	0.655	SYNONYMOUS_CODING MED14	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6032114	3L_6032114_SNP [dm3] 3L_6039014_SNP [dm6]	C	T	1.417e^-4	0.655	UPSTREAM Jon65Aiv DOWNSTREAM CG6462 INTERGENIC
2L	5089841	2L_5089841_SNP [dm3] 2L_5089841_SNP [dm6]	T	C	1.419e^-4	0.655	INTRON pgant5
3R	22248537	3R_22248537_SNP [dm3] 3R_26422815_SNP [dm6]	T	A	1.424e^-4	0.655	INTERGENIC
3R	22748868	3R_22748868_SNP [dm3] 3R_26923146_SNP [dm6]	T	A	1.425e^-4	0.655	INTRON sda
3R	26982574	3R_26982574_SNP [dm3] 3R_31156852_SNP [dm6]	C	G	1.435e^-4	0.655	INTRON Gycbeta100B
2R	10437881	2R_10437881_SNP [dm3] 2R_14550376_SNP [dm6]	G	A	1.437e^-4	0.655	INTRON ttv
2R	7180943	2R_7180943_SNP [dm3] 2R_11293438_SNP [dm6]	A	G	1.437e^-4	0.655	UTR_3_PRIME CG30033 UPSTREAM dare DOWNSTREAM CG18336 & 1 other
3L	13903924	3L_13903924_SNP [dm3] 3L_13910824_SNP [dm6]	C	T	1.442e^-4	0.655	INTRON Rgl
3L	4872665	3L_4872665_SNP [dm3] 3L_4872665_SNP [dm6]	G	C	1.444e^-4	0.655	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8893010	X_8893010_SNP [dm3] X_8998977_SNP [dm6]	A	C	1.444e^-4	0.655	INTRON rdgA & 1 other
X	7571375	X_7571375_SNP [dm3] X_7677342_SNP [dm6]	T	G	1.448e^-4	0.655	UTR_3_PRIME ct
2R	10127451	2R_10127451_SNP [dm3] 2R_14239946_SNP [dm6]	A	G	1.458e^-4	0.655	UTR_5_PRIME CG8494 UPSTREAM CG8485	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	20325958	2L_20325958_SNP [dm3] 2L_20325958_SNP [dm6]	G	T	1.459e^-4	0.655	INTRON spir	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5198346	3L_5198346_SNP [dm3] 3L_5205246_SNP [dm6]	G	A	1.463e^-4	0.655	INTRON shep
3L	5937260	3L_5937260_SNP [dm3] 3L_5944160_SNP [dm6]	C	G	1.464e^-4	0.655	INTRON CG33993
3R	22670306	3R_22670306_DEL [dm3] 3R_26844584_DEL [dm6]	CC	C	1.477e^-4	0.655	INTRON Lerp
3L	4871551	3L_4871551_SNP [dm3] 3L_4871551_SNP [dm6]	C	T	1.482e^-4	0.655	INTRON CG17150
2L	20628682	2L_20628682_SNP [dm3] 2L_20628682_SNP [dm6]	G	T	1.483e^-4	0.655	INTERGENIC
X	14071021	X_14071021_SNP [dm3] X_14176988_SNP [dm6]	G	A	1.484e^-4	0.655	SYNONYMOUS_CODING CG11581	TF binding site mE1_TFBS_chinmo
2R	10130123	2R_10130123_SNP [dm3] 2R_14242618_SNP [dm6]	T	C	1.489e^-4	0.655	SYNONYMOUS_CODING CG8494	TF binding site mE1_TFBS_cad
2L	10102532	2L_10102532_SNP [dm3] 2L_10102532_SNP [dm6]	T	A	1.491e^-4	0.655	INTRON CG44153 & 1 other
2R	18830914	2R_18830914_SNP [dm3] 2R_22943391_SNP [dm6]	A	C	1.491e^-4	0.655	SYNONYMOUS_CODING CG42694
3R	21030811	3R_21030811_SNP [dm3] 3R_25205089_SNP [dm6]	G	C	1.496e^-4	0.655	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_cad
3R	20011166	3R_20011166_SNP [dm3] 3R_24185444_SNP [dm6]	A	G	1.497e^-4	0.655	UPSTREAM CHORD INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	21110620	2L_21110620_SNP [dm3] 2L_21110620_SNP [dm6]	G	T	1.507e^-4	0.655	INTRON Nhe2	TF binding site BDTNP1_TFBS_dl
3R	26792490	3R_26792490_SNP [dm3] 3R_30966768_SNP [dm6]	G	A	1.507e^-4	0.655	INTERGENIC
2R	9601147	2R_9601147_SNP [dm3] 2R_13713642_SNP [dm6]	A	G	1.518e^-4	0.655	INTRON fas
2L	19896808	2L_19896808_SNP [dm3] 2L_19896808_SNP [dm6]	C	T	1.518e^-4	0.655	INTRON sick
3R	26789159	3R_26789159_SNP [dm3] 3R_30963437_SNP [dm6]	C	T	1.519e^-4	0.655	UTR_3_PRIME Ctr1C
3R	17000926	3R_17000926_SNP [dm3] 3R_21175204_SNP [dm6]	C	T	1.521e^-4	0.655	SYNONYMOUS_CODING SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8097408	3R_8097408_SNP [dm3] 3R_12271686_SNP [dm6]	C	T	1.527e^-4	0.655	DOWNSTREAM CG17738 INTRON svp	TF binding site mE1_TFBS_inv
2L	13586186	2L_13586186_SNP [dm3] 2L_13586186_SNP [dm6]	G	A	1.530e^-4	0.655	INTRON kuz
2L	20393398	2L_20393398_SNP [dm3] 2L_20393398_SNP [dm6]	A	T	1.530e^-4	0.655	INTRON CG10947
3R	25454111	3R_25454111_SNP [dm3] 3R_29628389_SNP [dm6]	A	G	1.531e^-4	0.655	INTERGENIC
2R	19646563	2R_19646563_SNP [dm3] 2R_23759040_SNP [dm6]	A	G	1.532e^-4	0.655	INTRON CG9850	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	14058708	X_14058708_DEL [dm3] X_14164675_DEL [dm6]	AA	A	1.533e^-4	0.655	INTERGENIC
3L	5521552	3L_5521552_SNP [dm3] 3L_5528452_SNP [dm6]	C	G	1.537e^-4	0.655	INTRON Lkr
3L	12822093	3L_12822093_SNP [dm3] 3L_12828993_SNP [dm6]	T	C	1.546e^-4	0.655	INTRON CG10960
3L	4871907	3L_4871907_SNP [dm3] 3L_4871907_SNP [dm6]	A	C	1.547e^-4	0.655	INTRON CG17150	TF binding site mE1_TFBS_HSA
3L	5939564	3L_5939564_SNP [dm3] 3L_5946464_SNP [dm6]	G	C	1.549e^-4	0.655	INTRON CG33993	TF binding site BDTNP1_TFBS_twi
2L	3505732	2L_3505732_SNP [dm3] 2L_3505732_SNP [dm6]	C	G	1.559e^-4	0.655	INTRON tim	TF binding site BDTNP1_TFBS_twi
3R	6416244	3R_6416244_SNP [dm3] 3R_10590522_SNP [dm6]	C	T	1.561e^-4	0.655	INTRON hth	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	19031760	3R_19031760_DEL [dm3] 3R_23206038_DEL [dm6]	AG	A	1.563e^-4	0.655	INTRON cnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	540867	3L_540867_SNP [dm3] 3L_540867_SNP [dm6]	G	A	1.568e^-4	0.655	UTR_5_PRIME CG17180 UPSTREAM CG17180 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	8432088	2L_8432088_SNP [dm3] 2L_8432088_SNP [dm6]	A	G	1.569e^-4	0.655	SYNONYMOUS_CODING grk DOWNSTREAM Akap200	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	20183461	2R_20183461_SNP [dm3] 2R_24295938_SNP [dm6]	C	A	1.570e^-4	0.655	SYNONYMOUS_CODING CG3394	TF binding site mE1_TFBS_chinmo
3L	253290	3L_253290_SNP [dm3] 3L_253290_SNP [dm6]	A	G	1.576e^-4	0.655	INTRON DIP2
3L	4875832	3L_4875832_SNP [dm3] 3L_4875832_SNP [dm6]	G	A	1.577e^-4	0.655	SYNONYMOUS_CODING CG17150
2L	15386524	2L_15386524_SNP [dm3] 2L_15386524_SNP [dm6]	C	G	1.578e^-4	0.655	INTERGENIC
2R	9755428	2R_9755428_SNP [dm3] 2R_13867923_SNP [dm6]	T	C	1.582e^-4	0.655	INTRON shot
3L	16013749	3L_16013749_SNP [dm3] 3L_16020649_SNP [dm6]	C	T	1.602e^-4	0.662	EXON CR43949	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	542208	3L_542208_DEL [dm3] 3L_542208_DEL [dm6]	CC	A	1.614e^-4	0.663	UTR_3_PRIME Cypl UPSTREAM hipk DOWNSTREAM CG17180	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	1653050	2L_1653050_SNP [dm3] 2L_1653050_SNP [dm6]	T	C	1.614e^-4	0.663	UTR_5_PRIME chinmo
X	7576379	X_7576379_SNP [dm3] X_7682346_SNP [dm6]	A	G	1.615e^-4	0.663	UTR_3_PRIME CHES-1-like
3R	8096171	3R_8096171_SNP [dm3] 3R_12270449_SNP [dm6]	A	T	1.629e^-4	0.664	UPSTREAM CG17738 DOWNSTREAM CR44039 INTRON svp
2L	16888345	2L_16888345_SNP [dm3] 2L_16888345_SNP [dm6]	T	G	1.636e^-4	0.664	UPSTREAM tweek & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Ubx
3R	11533976	3R_11533976_SNP [dm3] 3R_15708254_SNP [dm6]	G	A	1.636e^-4	0.664	UTR_3_PRIME CG5404
X	5916245	X_5916245_SNP [dm3] X_6022212_SNP [dm6]	T	A	1.636e^-4	0.664	INTERGENIC
3R	22670385	3R_22670385_SNP [dm3] 3R_26844663_SNP [dm6]	C	G	1.637e^-4	0.664	INTRON Lerp
3R	4723784	3R_4723784_SNP [dm3] 3R_8898062_SNP [dm6]	A	G	1.652e^-4	0.665	INTRON pyd	TF binding site BDTNP1_TFBS_dl
X	3811904	X_3811904_SNP [dm3] X_3917871_SNP [dm6]	C	T	1.653e^-4	0.665	INTRON CG42541
3L	20901651	3L_20901651_SNP [dm3] 3L_20908551_SNP [dm6]	A	G	1.661e^-4	0.665	INTERGENIC	TF binding site mE1_TFBS_inv
2R	19994027	2R_19994027_SNP [dm3] 2R_24106504_SNP [dm6]	C	T	1.663e^-4	0.665	SYNONYMOUS_CODING enok DOWNSTREAM CG4049	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3776369	2R_3776369_SNP [dm3] 2R_7888864_SNP [dm6]	A	T	1.666e^-4	0.665	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25433835	3R_25433835_DEL [dm3] 3R_29608113_DEL [dm6]	CCCCAC	C	1.666e^-4	0.665	UPSTREAM Diedel2 INTRON alph
3R	25446281	3R_25446281_INS [dm3] 3R_29620559_INS [dm6]	A	ATGA	1.677e^-4	0.665	UTR_3_PRIME CG1907	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	4705699	3R_4705699_SNP [dm3] 3R_8879977_SNP [dm6]	C	T	1.686e^-4	0.665	INTRON pyd
3L	12383402	3L_12383402_SNP [dm3] 3L_12390302_SNP [dm6]	G	A	1.689e^-4	0.665	INTRON Ncc69
2R	15824738	2R_15824738_SNP [dm3] 2R_19937233_SNP [dm6]	A	G	1.689e^-4	0.665	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8729549	3R_8729549_SNP [dm3] 3R_12903827_SNP [dm6]	G	C	1.689e^-4	0.665	INTERGENIC
2R	17237416	2R_17237416_SNP [dm3] 2R_21349911_SNP [dm6]	C	T	1.692e^-4	0.665	INTRON CG17974
2R	17237421	2R_17237421_DEL [dm3] 2R_21349916_DEL [dm6]	AA	A	1.692e^-4	0.665	INTRON CG17974
2R	10086453	2R_10086453_SNP [dm3] 2R_14198948_SNP [dm6]	T	A	1.694e^-4	0.665	UTR_3_PRIME VGAT DOWNSTREAM CG30069
3L	4873160	3L_4873160_SNP [dm3] 3L_4873160_SNP [dm6]	G	A	1.700e^-4	0.665	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18240946	X_18240946_SNP [dm3] X_18346913_SNP [dm6]	T	A	1.702e^-4	0.665	INTRON CG6123
2L	13077358	2L_13077358_SNP [dm3] 2L_13077358_SNP [dm6]	G	A	1.702e^-4	0.665	INTERGENIC
2L	20350998	2L_20350998_SNP [dm3] 2L_20350998_SNP [dm6]	C	A	1.710e^-4	0.665	UPSTREAM La INTRON RtGEF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D
3R	11002511	3R_11002511_SNP [dm3] 3R_15176789_SNP [dm6]	A	G	1.719e^-4	0.665	UTR_3_PRIME Mf INTRON Gyc88E & 1 other
3R	22430084	3R_22430084_SNP [dm3] 3R_26604362_SNP [dm6]	G	T	1.720e^-4	0.665	DOWNSTREAM scrib INTERGENIC
X	7696200	X_7696200_SNP [dm3] X_7802167_SNP [dm6]	G	A	1.721e^-4	0.665	INTERGENIC
2L	20855688	2L_20855688_SNP [dm3] 2L_20855688_SNP [dm6]	G	C	1.723e^-4	0.665	INTRON twit	TF binding site mE1_TFBS_inv
2L	17357384	2L_17357384_SNP [dm3] 2L_17357384_SNP [dm6]	G	A	1.727e^-4	0.665	INTERGENIC
2L	20359352	2L_20359352_INS [dm3] 2L_20359352_INS [dm6]	C	CTC	1.733e^-4	0.665	UTR_3_PRIME RtGEF INTRON RtGEF	TF binding site mE1_TFBS_cad
3L	11897267	3L_11897267_SNP [dm3] 3L_11904167_SNP [dm6]	G	T	1.734e^-4	0.665	INTRON CG44837
2L	11315092	2L_11315092_SNP [dm3] 2L_11315092_SNP [dm6]	G	A	1.734e^-4	0.665	INTERGENIC
3L	8870177	3L_8870177_SNP [dm3] 3L_8877077_SNP [dm6]	T	C	1.744e^-4	0.665	INTRON dally
2R	3299398	2R_3299398_SNP [dm3] 2R_7411893_SNP [dm6]	A	C	1.752e^-4	0.665	INTERGENIC	TF binding site mE1_TFBS_cad
3L	19333919	3L_19333919_SNP [dm3] 3L_19340819_SNP [dm6]	C	T	1.759e^-4	0.665	UTR_3_PRIME CG32206
X	8702787	X_8702787_SNP [dm3] X_8808754_SNP [dm6]	G	A	1.761e^-4	0.665	INTERGENIC
X	6452220	X_6452220_SNP [dm3] X_6558187_SNP [dm6]	T	C	1.763e^-4	0.665	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
3L	5917903	3L_5917903_SNP [dm3] 3L_5924803_SNP [dm6]	T	A	1.775e^-4	0.665	INTRON Vap-33B
3L	5935068	3L_5935068_SNP [dm3] 3L_5941968_SNP [dm6]	T	A	1.778e^-4	0.665	INTRON CG33993
3L	5939023	3L_5939023_INS [dm3] 3L_5945923_INS [dm6]	C	ATGT	1.778e^-4	0.665	INTRON CG33993	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1337566	2L_1337566_SNP [dm3] 2L_1337566_SNP [dm6]	G	A	1.783e^-4	0.665	INTERGENIC
3L	4872086	3L_4872086_SNP [dm3] 3L_4872086_SNP [dm6]	C	A	1.783e^-4	0.665	INTRON CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4113360	3L_4113360_SNP [dm3] 3L_4113360_SNP [dm6]	G	T	1.785e^-4	0.665	NON_SYNONYMOUS_CODING Ack DOWNSTREAM Chd64	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10796692	3R_10796692_SNP [dm3] 3R_14970970_SNP [dm6]	A	C	1.788e^-4	0.665	INTERGENIC
X	4917685	X_4917685_DEL [dm3] X_5023652_DEL [dm6]	AA	A	1.797e^-4	0.665	INTRON CR44833	regulatory region REDfly_CRMs
X	22182202	X_22182202_SNP [dm3] X_22780366_SNP [dm6]	A	G	1.804e^-4	0.665	INTRON CR44997	transposable element FlyBase
3R	18481985	3R_18481985_SNP [dm3] 3R_22656263_SNP [dm6]	G	A	1.805e^-4	0.665	INTRON CG45058
2L	1715374	2L_1715374_SNP [dm3] 2L_1715374_SNP [dm6]	C	T	1.807e^-4	0.665	SYNONYMOUS_CODING frtz DOWNSTREAM Rim2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	4332648	2R_4332648_SNP [dm3] 2R_8445143_SNP [dm6]	G	C	1.812e^-4	0.665	DOWNSTREAM mir-986 INTRON Cyp4e2	TF binding site mE1_TFBS_cnc
3L	530819	3L_530819_SNP [dm3] 3L_530819_SNP [dm6]	T	C	1.813e^-4	0.665	INTRON klar
3L	1392225	3L_1392225_SNP [dm3] 3L_1392225_SNP [dm6]	A	T	1.816e^-4	0.665	INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16008031	3L_16008031_DEL [dm3] 3L_16014931_DEL [dm6]	AAA	A	1.819e^-4	0.665	INTERGENIC
X	5916241	X_5916241_SNP [dm3] X_6022208_SNP [dm6]	G	A	1.830e^-4	0.665	INTERGENIC
3L	15638809	3L_15638809_SNP [dm3] 3L_15645709_SNP [dm6]	A	T	1.830e^-4	0.665	INTRON comm3
X	5916260	X_5916260_SNP [dm3] X_6022227_SNP [dm6]	T	A	1.833e^-4	0.665	INTERGENIC
X	14613361	X_14613361_SNP [dm3] X_14719328_SNP [dm6]	A	C	1.836e^-4	0.665	UPSTREAM hog INTRON NetB	transposable element FlyBase
3L	14534594	3L_14534594_SNP [dm3] 3L_14541494_SNP [dm6]	C	G	1.837e^-4	0.665	UTR_3_PRIME CG9238 DOWNSTREAM CG9238
2R	16312542	2R_16312542_INS [dm3] 2R_20425037_INS [dm6]	T	TT	1.839e^-4	0.665	INTRON CG12484
3R	13153947	3R_13153947_SNP [dm3] 3R_17328225_SNP [dm6]	A	T	1.841e^-4	0.665	INTRON beat-IIa
2L	11436132	2L_11436132_SNP [dm3] 2L_11436132_SNP [dm6]	G	A	1.848e^-4	0.665	INTRON salm	TF binding site BDTNP1_TFBS_twi
2L	8773382	2L_8773382_SNP [dm3] 2L_8773382_SNP [dm6]	C	G	1.855e^-4	0.665	SYNONYMOUS_CODING CG9466	TF binding site mE1_TFBS_cad
3L	12822072	3L_12822072_SNP [dm3] 3L_12828972_SNP [dm6]	T	A	1.856e^-4	0.665	INTRON CG10960
3L	12822077	3L_12822077_SNP [dm3] 3L_12828977_SNP [dm6]	C	T	1.856e^-4	0.665	INTRON CG10960
3L	12822078	3L_12822078_SNP [dm3] 3L_12828978_SNP [dm6]	T	A	1.856e^-4	0.665	INTRON CG10960
3L	4870727	3L_4870727_SNP [dm3] 3L_4870727_SNP [dm6]	T	C	1.856e^-4	0.665	SYNONYMOUS_CODING CG17150
2R	13381600	2R_13381600_SNP [dm3] 2R_17494095_SNP [dm6]	C	G	1.857e^-4	0.665	SYNONYMOUS_CODING CG30103 DOWNSTREAM NT5E-2
2R	8344038	2R_8344038_SNP [dm3] 2R_12456533_SNP [dm6]	G	A	1.858e^-4	0.665	INTRON Lac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	515275	3L_515275_SNP [dm3] 3L_515275_SNP [dm6]	T	C	1.862e^-4	0.665	INTRON klar
3R	13768719	3R_13768719_SNP [dm3] 3R_17942997_SNP [dm6]	G	A	1.863e^-4	0.665	INTRON cpo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens mE1_TFBS_Trl
3R	11534134	3R_11534134_SNP [dm3] 3R_15708412_SNP [dm6]	T	A	1.870e^-4	0.665	UTR_3_PRIME CG5404
3R	8096169	3R_8096169_SNP [dm3] 3R_12270447_SNP [dm6]	T	G	1.870e^-4	0.665	UPSTREAM CG17738 DOWNSTREAM CR44039 INTRON svp
3R	4716123	3R_4716123_SNP [dm3] 3R_8890401_SNP [dm6]	T	C	1.874e^-4	0.665	INTRON pyd
3R	20553753	3R_20553753_SNP [dm3] 3R_24728031_SNP [dm6]	A	G	1.879e^-4	0.665	SYNONYMOUS_CODING tok
3R	11534126	3R_11534126_SNP [dm3] 3R_15708404_SNP [dm6]	A	T	1.886e^-4	0.665	UTR_3_PRIME CG5404
X	22105859	X_22105859_SNP [dm3] X_22704023_SNP [dm6]	A	G	1.886e^-4	0.665	INTRON CR44997	transposable element FlyBase
2L	11883718	2L_11883718_SNP [dm3] 2L_11883718_SNP [dm6]	C	T	1.890e^-4	0.665	INTRON Pde1c
3R	11534135	3R_11534135_SNP [dm3] 3R_15708413_SNP [dm6]	G	A	1.892e^-4	0.665	UTR_3_PRIME CG5404
3R	10496438	3R_10496438_SNP [dm3] 3R_14670716_SNP [dm6]	G	A	1.895e^-4	0.665	SYNONYMOUS_CODING Meltrin	TF binding site mE1_TFBS_cad
3L	18207314	3L_18207314_SNP [dm3] 3L_18214214_SNP [dm6]	G	T	1.901e^-4	0.665	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8702802	X_8702802_SNP [dm3] X_8808769_SNP [dm6]	A	T	1.902e^-4	0.665	INTERGENIC
X	3872687	X_3872687_SNP [dm3] X_3978654_SNP [dm6]	T	A	1.907e^-4	0.665	INTERGENIC
3R	22248531	3R_22248531_SNP [dm3] 3R_26422809_SNP [dm6]	C	A	1.915e^-4	0.665	INTERGENIC
3L	5938145	3L_5938145_SNP [dm3] 3L_5945045_SNP [dm6]	T	A	1.923e^-4	0.665	INTRON CG33993
3L	7977376	3L_7977376_SNP [dm3] 3L_7984276_SNP [dm6]	G	A	1.927e^-4	0.665	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	18972435	2R_18972435_SNP [dm3] 2R_23084912_SNP [dm6]	T	A	1.931e^-4	0.665	DOWNSTREAM CG9877 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	16737421	3R_16737421_SNP [dm3] 3R_20911699_SNP [dm6]	T	C	1.932e^-4	0.665	UTR_3_PRIME CG31191 EXON CR44106
3L	7629324	3L_7629324_SNP [dm3] 3L_7636224_SNP [dm6]	G	C	1.937e^-4	0.665	NON_SYNONYMOUS_CODING CG33275	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10791598	3R_10791598_SNP [dm3] 3R_14965876_SNP [dm6]	T	C	1.938e^-4	0.665	INTERGENIC
3R	8097461	3R_8097461_SNP [dm3] 3R_12271739_SNP [dm6]	G	A	1.945e^-4	0.665	DOWNSTREAM CG17738 INTRON svp	TF binding site mE1_TFBS_inv
3R	11534116	3R_11534116_SNP [dm3] 3R_15708394_SNP [dm6]	A	T	1.946e^-4	0.665	UTR_3_PRIME CG5404
2L	20083070	2L_20083070_SNP [dm3] 2L_20083070_SNP [dm6]	T	A	1.947e^-4	0.665	INTRON neb & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11881444	2L_11881444_SNP [dm3] 2L_11881444_SNP [dm6]	C	A	1.947e^-4	0.665	INTRON Pde1c	TF binding site mE1_TFBS_inv
3R	23035386	3R_23035386_SNP [dm3] 3R_27209664_SNP [dm6]	T	A	1.948e^-4	0.665	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4666084	3R_4666084_SNP [dm3] 3R_8840362_SNP [dm6]	G	A	1.952e^-4	0.665	SYNONYMOUS_CODING pyd	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	2854740	3R_2854740_SNP [dm3] 3R_7029018_SNP [dm6]	A	T	1.953e^-4	0.665	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	11534118	3R_11534118_MNP [dm3] 3R_15708396_MNP [dm6]	CAC	TTG	1.956e^-4	0.665	UTR_3_PRIME CG5404
X	16690843	X_16690843_SNP [dm3] X_16796810_SNP [dm6]	A	G	1.973e^-4	0.666	DOWNSTREAM CG9132 & 1 other INTERGENIC
2R	14154053	2R_14154053_SNP [dm3] 2R_18266548_SNP [dm6]	A	C	1.974e^-4	0.666	INTERGENIC
2R	3849357	2R_3849357_SNP [dm3] 2R_7961852_SNP [dm6]	T	C	1.976e^-4	0.666	UTR_5_PRIME Sep5 UPSTREAM nito	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
3L	6910013	3L_6910013_SNP [dm3] 3L_6916913_SNP [dm6]	A	T	1.980e^-4	0.666	INTERGENIC
2R	19675611	2R_19675611_SNP [dm3] 2R_23788088_SNP [dm6]	A	G	1.981e^-4	0.666	INTRON CG9850
3R	23035426	3R_23035426_SNP [dm3] 3R_27209704_SNP [dm6]	C	T	1.985e^-4	0.666	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	19483039	2R_19483039_SNP [dm3] 2R_23595516_SNP [dm6]	A	C	1.986e^-4	0.666	INTRON apt
3R	23723352	3R_23723352_SNP [dm3] 3R_27897630_SNP [dm6]	A	C	1.990e^-4	0.666	INTRON CG34353
X	3811901	X_3811901_SNP [dm3] X_3917868_SNP [dm6]	G	C	2.008e^-4	0.666	INTRON CG42541
3L	2340636	3L_2340636_SNP [dm3] 3L_2340636_SNP [dm6]	G	A	2.008e^-4	0.666	INTRON MsR1	TF binding site mE1_TFBS_inv
2R	9755498	2R_9755498_SNP [dm3] 2R_13867993_SNP [dm6]	G	A	2.010e^-4	0.666	INTRON shot
3R	10823207	3R_10823207_SNP [dm3] 3R_14997485_SNP [dm6]	C	T	2.012e^-4	0.666	INTERGENIC
X	5916238	X_5916238_SNP [dm3] X_6022205_SNP [dm6]	A	C	2.016e^-4	0.666	INTERGENIC
X	12325837	X_12325837_DEL [dm3] X_12431804_DEL [dm6]	TT	T	2.018e^-4	0.666	UPSTREAM Pkcdelta INTERGENIC	TF binding site mE1_TFBS_Trl
3L	8080844	3L_8080844_SNP [dm3] 3L_8087744_SNP [dm6]	C	T	2.020e^-4	0.666	UTR_3_PRIME CG7565 INTRON Ect4
3L	9251694	3L_9251694_SNP [dm3] 3L_9258594_SNP [dm6]	T	G	2.023e^-4	0.666	INTRON GluRIB	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20224612	2L_20224612_SNP [dm3] 2L_20224612_SNP [dm6]	A	G	2.029e^-4	0.666	INTERGENIC
2L	21110118	2L_21110118_SNP [dm3] 2L_21110118_SNP [dm6]	A	T	2.030e^-4	0.666	INTRON Nhe2	TF binding site BDTNP1_TFBS_dl
X	9212139	X_9212139_SNP [dm3] X_9318106_SNP [dm6]	T	C	2.034e^-4	0.666	UTR_3_PRIME c12.1	TF binding site mE1_TFBS_cad
2R	14268823	2R_14268823_SNP [dm3] 2R_18381318_SNP [dm6]	G	A	2.040e^-4	0.666	DOWNSTREAM CG43202 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26256477	3R_26256477_SNP [dm3] 3R_30430755_SNP [dm6]	C	T	2.045e^-4	0.666	SYNONYMOUS_CODING CG15533	TF binding site mE1_TFBS_cad
2R	18127865	2R_18127865_SNP [dm3] 2R_22240360_SNP [dm6]	G	C	2.047e^-4	0.666	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12822022	3L_12822022_SNP [dm3] 3L_12828922_SNP [dm6]	T	G	2.047e^-4	0.666	INTRON CG10960
3R	26973052	3R_26973052_SNP [dm3] 3R_31147330_SNP [dm6]	A	G	2.053e^-4	0.666	INTRON Gycbeta100B
2R	20000332	2R_20000332_SNP [dm3] 2R_24112809_SNP [dm6]	A	C	2.054e^-4	0.666	NON_SYNONYMOUS_CODING CG4049	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4419407	3L_4419407_SNP [dm3] 3L_4419407_SNP [dm6]	A	T	2.055e^-4	0.666	INTRON DOR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19997463	2R_19997463_SNP [dm3] 2R_24109940_SNP [dm6]	A	G	2.056e^-4	0.666	SYNONYMOUS_CODING CG4049
X	14375818	X_14375818_SNP [dm3] X_14481785_SNP [dm6]	G	A	2.065e^-4	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	13316091	2R_13316091_SNP [dm3] 2R_17428586_SNP [dm6]	G	T	2.066e^-4	0.667	SYNONYMOUS_CODING Mtap DOWNSTREAM Bap55	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	1723107	3R_1723107_SNP [dm3] 3R_5897385_SNP [dm6]	T	C	2.075e^-4	0.669	INTRON CG34113	TF binding site BDTNP1_TFBS_twi
3L	7451158	3L_7451158_SNP [dm3] 3L_7458058_SNP [dm6]	G	A	2.082e^-4	0.669	INTRON ppk26
3R	19010712	3R_19010712_SNP [dm3] 3R_23184990_SNP [dm6]	T	C	2.083e^-4	0.669	UTR_3_PRIME Irk1 DOWNSTREAM cnc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17186300	2L_17186300_SNP [dm3] 2L_17186300_SNP [dm6]	G	A	2.088e^-4	0.67	INTERGENIC
3L	3904436	3L_3904436_SNP [dm3] 3L_3904436_SNP [dm6]	G	T	2.093e^-4	0.67	UPSTREAM ida INTRON Sc2
X	14763061	X_14763061_SNP [dm3] X_14869028_SNP [dm6]	T	C	2.101e^-4	0.67	INTRON Flo2 & 1 other
3L	4872073	3L_4872073_SNP [dm3] 3L_4872073_SNP [dm6]	C	A	2.102e^-4	0.67	INTRON CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1138074	2L_1138074_SNP [dm3] 2L_1138074_SNP [dm6]	C	T	2.108e^-4	0.67	INTRON CG4577
3L	4188648	3L_4188648_SNP [dm3] 3L_4188648_SNP [dm6]	G	A	2.118e^-4	0.67	UTR_5_PRIME tipE UPSTREAM Teh2 INTRON CG18675 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	19997567	2R_19997567_SNP [dm3] 2R_24110044_SNP [dm6]	C	T	2.122e^-4	0.67	NON_SYNONYMOUS_CODING CG4049
3R	26663454	3R_26663454_DEL [dm3] 3R_30837732_DEL [dm6]	ACA	A	2.128e^-4	0.67	INTRON CG15544
3L	6279969	3L_6279969_SNP [dm3] 3L_6286869_SNP [dm6]	G	T	2.131e^-4	0.67	INTERGENIC
3R	17762159	3R_17762159_SNP [dm3] 3R_21936437_SNP [dm6]	G	A	2.134e^-4	0.67	INTERGENIC
3L	4647767	3L_4647767_SNP [dm3] 3L_4647767_SNP [dm6]	T	C	2.137e^-4	0.67	UPSTREAM CG32238 INTRON axo
2L	13142031	2L_13142031_SNP [dm3] 2L_13142031_SNP [dm6]	C	T	2.137e^-4	0.67	DOWNSTREAM CG9928 INTERGENIC
3R	20011165	3R_20011165_SNP [dm3] 3R_24185443_SNP [dm6]	G	A	2.144e^-4	0.67	UPSTREAM CHORD INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	6416242	3R_6416242_SNP [dm3] 3R_10590520_SNP [dm6]	A	G	2.148e^-4	0.67	INTRON hth	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	957538	X_957538_SNP [dm3] X_1063505_SNP [dm6]	C	G	2.154e^-4	0.67	INTRON CR44779	TF binding site BDTNP1_TFBS_dl
3L	7955986	3L_7955986_DEL [dm3] 3L_7962886_DEL [dm6]	AAATACACCTA...	A	2.162e^-4	0.67	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	8029189	X_8029189_SNP [dm3] X_8135156_SNP [dm6]	T	C	2.162e^-4	0.67	UPSTREAM CG2120 DOWNSTREAM CG10958 INTRON cyr
X	12329388	X_12329388_SNP [dm3] X_12435355_SNP [dm6]	A	T	2.167e^-4	0.67	INTRON Pkcdelta
X	4689574	X_4689574_SNP [dm3] X_4795541_SNP [dm6]	C	A	2.169e^-4	0.67	INTERGENIC
2L	15189495	2L_15189495_SNP [dm3] 2L_15189495_SNP [dm6]	C	T	2.176e^-4	0.67	INTRON CG4168
2R	19998106	2R_19998106_SNP [dm3] 2R_24110583_SNP [dm6]	C	T	2.179e^-4	0.67	SYNONYMOUS_CODING CG4049
2R	19998366	2R_19998366_SNP [dm3] 2R_24110843_SNP [dm6]	A	G	2.179e^-4	0.67	SYNONYMOUS_CODING CG4049	TF binding site mE1_TFBS_cad
2R	20002231	2R_20002231_SNP [dm3] 2R_24114708_SNP [dm6]	C	T	2.179e^-4	0.67	START_GAINED CG3253 UTR_5_PRIME CG3253 UPSTREAM CG4049	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx
2R	20003420	2R_20003420_SNP [dm3] 2R_24115897_SNP [dm6]	T	G	2.179e^-4	0.67	UPSTREAM CG3257 INTRON CG3253	TF binding site mE1_TFBS_sens
2R	20003613	2R_20003613_SNP [dm3] 2R_24116090_SNP [dm6]	G	T	2.179e^-4	0.67	UPSTREAM CG3257 INTRON CG3253
2R	20003784	2R_20003784_SNP [dm3] 2R_24116261_SNP [dm6]	C	T	2.179e^-4	0.67	SYNONYMOUS_CODING CG3253 UPSTREAM CG3257
2L	7460137	2L_7460137_SNP [dm3] 2L_7460137_SNP [dm6]	C	T	2.184e^-4	0.67	SYNONYMOUS_CODING Gr28b INTRON Gr28b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3920735	2R_3920735_SNP [dm3] 2R_8033230_SNP [dm6]	T	G	2.188e^-4	0.67	INTRON Optix
X	5440300	X_5440300_SNP [dm3] X_5546267_SNP [dm6]	A	T	2.191e^-4	0.67	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	18395930	3L_18395930_SNP [dm3] 3L_18402830_SNP [dm6]	T	C	2.199e^-4	0.671	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	21110850	2L_21110850_SNP [dm3] 2L_21110850_SNP [dm6]	G	A	2.201e^-4	0.671	INTRON Nhe2
3R	18724234	3R_18724234_SNP [dm3] 3R_22898512_SNP [dm6]	C	G	2.204e^-4	0.671	UPSTREAM klg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
3R	26789165	3R_26789165_SNP [dm3] 3R_30963443_SNP [dm6]	C	G	2.211e^-4	0.672	UTR_3_PRIME Ctr1C
3L	6909942	3L_6909942_SNP [dm3] 3L_6916842_SNP [dm6]	A	G	2.225e^-4	0.673	INTERGENIC
2L	20855685	2L_20855685_SNP [dm3] 2L_20855685_SNP [dm6]	C	T	2.234e^-4	0.673	INTRON twit	TF binding site mE1_TFBS_inv
2L	20255169	2L_20255169_SNP [dm3] 2L_20255169_SNP [dm6]	A	T	2.235e^-4	0.673	UPSTREAM CR40465 DOWNSTREAM CG17571 INTERGENIC
3R	12396134	3R_12396134_SNP [dm3] 3R_16570412_SNP [dm6]	A	G	2.237e^-4	0.673	UTR_3_PRIME CG42342 INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10555424	3L_10555424_SNP [dm3] 3L_10562324_SNP [dm6]	T	A	2.243e^-4	0.673	INTRON A2bp1
2R	20670084	2R_20670084_SNP [dm3] 2R_24782561_SNP [dm6]	C	T	2.243e^-4	0.673	SYNONYMOUS_CODING Aats-tyr-m UPSTREAM CG3589 DOWNSTREAM Eap	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	19916696	2R_19916696_SNP [dm3] 2R_24029173_SNP [dm6]	C	G	2.244e^-4	0.673	UPSTREAM CG3163 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	21775351	3R_21775351_SNP [dm3] 3R_25949629_SNP [dm6]	T	G	2.245e^-4	0.673	INTRON CCAP-R
3R	11533966	3R_11533966_SNP [dm3] 3R_15708244_SNP [dm6]	A	T	2.249e^-4	0.673	UTR_3_PRIME CG5404
3L	8068957	3L_8068957_SNP [dm3] 3L_8075857_SNP [dm6]	T	G	2.253e^-4	0.673	INTRON Ect4
3L	16705398	3L_16705398_SNP [dm3] 3L_16712298_SNP [dm6]	A	T	2.266e^-4	0.673	UTR_5_PRIME Dab UPSTREAM Lasp & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	18955715	3R_18955715_SNP [dm3] 3R_23129993_SNP [dm6]	C	T	2.267e^-4	0.673	INTRON hh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16737456	3R_16737456_SNP [dm3] 3R_20911734_SNP [dm6]	T	C	2.267e^-4	0.673	UTR_3_PRIME CG31191 DOWNSTREAM snoRNA:CG31191-a EXON CR44106
3L	1109685	3L_1109685_SNP [dm3] 3L_1109685_SNP [dm6]	T	A	2.270e^-4	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	4722759	3R_4722759_SNP [dm3] 3R_8897037_SNP [dm6]	G	T	2.283e^-4	0.673	INTRON pyd
3L	79747	3L_79747_SNP [dm3] 3L_79747_SNP [dm6]	T	A	2.285e^-4	0.673	INTERGENIC
3L	5311327	3L_5311327_DEL [dm3] 3L_5318227_DEL [dm6]	GGTATAAGGCGATATAAGCT...	G	2.285e^-4	0.673	INTERGENIC
2L	21111512	2L_21111512_SNP [dm3] 2L_21111512_SNP [dm6]	A	T	2.288e^-4	0.673	INTRON Nhe2
2L	20314380	2L_20314380_DEL [dm3] 2L_20314380_DEL [dm6]	ATTAGGTGAGATATCGA...	A	2.289e^-4	0.673	INTRON spir	TF binding site mE1_TFBS_cad
3L	12821141	3L_12821141_SNP [dm3] 3L_12828041_SNP [dm6]	T	G	2.293e^-4	0.673	UPSTREAM CG10960 INTRON CG10960
3L	12824678	3L_12824678_SNP [dm3] 3L_12831578_SNP [dm6]	A	T	2.293e^-4	0.673	INTRON CG10960
3L	6909975	3L_6909975_SNP [dm3] 3L_6916875_SNP [dm6]	A	G	2.295e^-4	0.673	INTERGENIC
2L	14900362	2L_14900362_SNP [dm3] 2L_14900362_SNP [dm6]	C	T	2.298e^-4	0.673	INTERGENIC
3L	575791	3L_575791_SNP [dm3] 3L_575791_SNP [dm6]	G	T	2.301e^-4	0.673	UTR_3_PRIME hipk
2R	4545473	2R_4545473_SNP [dm3] 2R_8657968_SNP [dm6]	A	G	2.302e^-4	0.673	INTRON ptc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	7575959	X_7575959_SNP [dm3] X_7681926_SNP [dm6]	C	A	2.306e^-4	0.673	UPSTREAM CR45665 DOWNSTREAM CHES-1-like INTERGENIC
3R	15949920	3R_15949920_SNP [dm3] 3R_20124198_SNP [dm6]	G	C	2.312e^-4	0.673	INTERGENIC
3L	12822431	3L_12822431_SNP [dm3] 3L_12829331_SNP [dm6]	G	A	2.316e^-4	0.674	INTRON CG10960
3R	21259435	3R_21259435_SNP [dm3] 3R_25433713_SNP [dm6]	A	C	2.323e^-4	0.674	INTRON Fur1
2R	7392759	2R_7392759_SNP [dm3] 2R_11505254_SNP [dm6]	C	A	2.324e^-4	0.674	INTRON inv
3R	2808311	3R_2808311_SNP [dm3] 3R_6982589_SNP [dm6]	A	T	2.347e^-4	0.679	INTRON Antp
X	22095826	X_22095826_SNP [dm3] X_22693990_SNP [dm6]	G	A	2.357e^-4	0.681	INTRON CR44997	transposable element FlyBase
X	1535215	X_1535215_SNP [dm3] X_1641182_SNP [dm6]	G	A	2.380e^-4	0.681	INTRON Mur2B & 1 other
2R	4545486	2R_4545486_SNP [dm3] 2R_8657981_SNP [dm6]	G	A	2.380e^-4	0.681	INTRON ptc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	20313244	2L_20313244_SNP [dm3] 2L_20313244_SNP [dm6]	G	A	2.385e^-4	0.681	INTRON spir
3L	8653500	3L_8653500_DEL [dm3] 3L_8660400_DEL [dm6]	TGT	T	2.387e^-4	0.681	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19982484	2R_19982484_SNP [dm3] 2R_24094961_SNP [dm6]	T	C	2.387e^-4	0.681	SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7947957	2R_7947957_SNP [dm3] 2R_12060452_SNP [dm6]	C	A	2.388e^-4	0.681	INTRON Drep-3
3L	20979911	3L_20979911_DEL [dm3] 3L_20986811_DEL [dm6]	CGACACGCGGCCGACGAGAG...	C	2.388e^-4	0.681	INTERGENIC
3L	5917760	3L_5917760_SNP [dm3] 3L_5924660_SNP [dm6]	A	G	2.392e^-4	0.681	INTRON Vap-33B
X	9240620	X_9240620_SNP [dm3] X_9346587_SNP [dm6]	G	A	2.395e^-4	0.681	INTRON CG34449
3L	19553283	3L_19553283_SNP [dm3] 3L_19560183_SNP [dm6]	T	C	2.396e^-4	0.681	DOWNSTREAM CR44676 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12313523	3L_12313523_SNP [dm3] 3L_12320423_SNP [dm6]	A	G	2.396e^-4	0.681	INTERGENIC
X	8029178	X_8029178_SNP [dm3] X_8135145_SNP [dm6]	T	C	2.400e^-4	0.681	UPSTREAM CG2120 DOWNSTREAM CG10958 INTRON cyr
3L	548263	3L_548263_SNP [dm3] 3L_548263_SNP [dm6]	A	C	2.404e^-4	0.681	INTRON hipk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	4872414	3L_4872414_SNP [dm3] 3L_4872414_SNP [dm6]	A	G	2.410e^-4	0.682	NON_SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25339027	3R_25339027_DEL [dm3] 3R_29513305_DEL [dm6]	CTG	C	2.421e^-4	0.682	INTERGENIC
3R	25969677	3R_25969677_SNP [dm3] 3R_30143955_SNP [dm6]	G	C	2.422e^-4	0.682	INTRON AdoR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	1542155	X_1542155_SNP [dm3] X_1648122_SNP [dm6]	C	T	2.428e^-4	0.682	SYNONYMOUS_CODING br INTRON Mur2B & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20423036	2L_20423036_DEL [dm3] 2L_20423036_DEL [dm6]	GG	G	2.430e^-4	0.682	DOWNSTREAM snoRNA:Psi18S-525j & 2 others INTERGENIC
3R	8372946	3R_8372946_SNP [dm3] 3R_12547224_SNP [dm6]	G	C	2.431e^-4	0.682	INTRON Octbeta3R
3L	4872893	3L_4872893_SNP [dm3] 3L_4872893_SNP [dm6]	T	C	2.433e^-4	0.682	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22746594	3R_22746594_SNP [dm3] 3R_26920872_SNP [dm6]	G	C	2.437e^-4	0.682	INTRON sda
X	16786595	X_16786595_SNP [dm3] X_16892562_SNP [dm6]	A	T	2.443e^-4	0.682	INTERGENIC
3L	8105939	3L_8105939_SNP [dm3] 3L_8112839_SNP [dm6]	C	T	2.444e^-4	0.682	UTR_3_PRIME CG7927 DOWNSTREAM Arp3 INTRON CG7927
3L	869272	3L_869272_SNP [dm3] 3L_869272_SNP [dm6]	C	A	2.447e^-4	0.682	SYNONYMOUS_CODING CG12502	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4871596	3L_4871596_SNP [dm3] 3L_4871596_SNP [dm6]	G	A	2.455e^-4	0.682	INTRON CG17150
3R	5658198	3R_5658198_SNP [dm3] 3R_9832476_SNP [dm6]	A	G	2.464e^-4	0.682	INTRON Teh1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20222915	2L_20222915_SNP [dm3] 2L_20222915_SNP [dm6]	A	G	2.465e^-4	0.682	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	2269759	X_2269759_SNP [dm3] X_2375726_SNP [dm6]	G	T	2.468e^-4	0.682	DOWNSTREAM PsGEF INTRON PsGEF
2L	19878202	2L_19878202_SNP [dm3] 2L_19878202_SNP [dm6]	G	A	2.470e^-4	0.682	INTRON sick
2R	16061662	2R_16061662_SNP [dm3] 2R_20174157_SNP [dm6]	G	T	2.485e^-4	0.682	INTERGENIC
2R	10213666	2R_10213666_SNP [dm3] 2R_14326161_SNP [dm6]	T	G	2.485e^-4	0.682	INTRON Shroom	TF binding site mE1_TFBS_inv
3R	6857972	3R_6857972_SNP [dm3] 3R_11032250_SNP [dm6]	A	G	2.497e^-4	0.682	INTRON CG34114
X	22105868	X_22105868_SNP [dm3] X_22704032_SNP [dm6]	T	G	2.497e^-4	0.682	INTRON CR44997	transposable element FlyBase
4	553077	4_553077_SNP [dm3] 4_532451_SNP [dm6]	T	C	2.500e^-4	0.682	INTRON zfh2
2R	19675839	2R_19675839_SNP [dm3] 2R_23788316_SNP [dm6]	C	A	2.503e^-4	0.682	INTRON CG9850
3R	13682831	3R_13682831_SNP [dm3] 3R_17857109_SNP [dm6]	C	T	2.510e^-4	0.682	INTRON tinc
3L	4871962	3L_4871962_SNP [dm3] 3L_4871962_SNP [dm6]	A	T	2.513e^-4	0.682	INTRON CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13913071	3R_13913071_SNP [dm3] 3R_18087349_SNP [dm6]	A	G	2.519e^-4	0.682	INTERGENIC
3L	5521724	3L_5521724_SNP [dm3] 3L_5528624_SNP [dm6]	G	A	2.521e^-4	0.682	INTRON Lkr
2L	21742668	2L_21742668_SNP [dm3] 2L_21742668_SNP [dm6]	G	C	2.524e^-4	0.682	SYNONYMOUS_CODING step	TF binding site mE1_TFBS_cad
3R	25167468	3R_25167468_SNP [dm3] 3R_29341746_SNP [dm6]	G	A	2.532e^-4	0.682	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	15702110	2R_15702110_SNP [dm3] 2R_19814605_SNP [dm6]	A	G	2.533e^-4	0.682	UPSTREAM Obp56h INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	25341540	3R_25341540_SNP [dm3] 3R_29515818_SNP [dm6]	T	A	2.537e^-4	0.682	UTR_5_PRIME CG2014 INTRON CG2014	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2L	17651823	2L_17651823_INS [dm3] 2L_17651823_INS [dm6]	G	GAAAATAG	2.540e^-4	0.682	INTRON CadN
2R	8589655	2R_8589655_SNP [dm3] 2R_12702150_SNP [dm6]	C	T	2.543e^-4	0.682	INTERGENIC
2R	9951155	2R_9951155_SNP [dm3] 2R_14063650_SNP [dm6]	A	G	2.548e^-4	0.682	NON_SYNONYMOUS_CODING Prosap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19896822	2L_19896822_SNP [dm3] 2L_19896822_SNP [dm6]	G	C	2.552e^-4	0.682	INTRON sick
2R	17849314	2R_17849314_SNP [dm3] 2R_21961809_SNP [dm6]	G	T	2.552e^-4	0.682	INTERGENIC
3L	15622155	3L_15622155_SNP [dm3] 3L_15629055_SNP [dm6]	C	G	2.553e^-4	0.682	INTRON comm3
3R	26073450	3R_26073450_SNP [dm3] 3R_30247728_SNP [dm6]	C	T	2.554e^-4	0.682	DOWNSTREAM tRNA:CR31383 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
X	22098656	X_22098656_SNP [dm3] X_22696820_SNP [dm6]	T	C	2.556e^-4	0.682	INTRON CR44997
X	14768964	X_14768964_SNP [dm3] X_14874931_SNP [dm6]	T	C	2.558e^-4	0.682	DOWNSTREAM CG45065 & 1 other INTRON Flo2
2R	16918794	2R_16918794_SNP [dm3] 2R_21031289_SNP [dm6]	C	T	2.562e^-4	0.682	INTERGENIC
3L	5097674	3L_5097674_SNP [dm3] 3L_5097674_SNP [dm6]	T	G	2.567e^-4	0.682	DOWNSTREAM CR34047 INTERGENIC
3R	17227802	3R_17227802_SNP [dm3] 3R_21402080_SNP [dm6]	G	C	2.568e^-4	0.682	NON_SYNONYMOUS_CODING CG43311	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	20422800	2L_20422800_INS [dm3] 2L_20422800_INS [dm6]	T	TT	2.571e^-4	0.682	UTR_3_PRIME Arpc2 DOWNSTREAM snoRNA:Psi18S-640g & 2 others
3R	9931947	3R_9931947_SNP [dm3] 3R_14106225_SNP [dm6]	C	A	2.572e^-4	0.682	SYNONYMOUS_CODING CG12402
3L	4647908	3L_4647908_SNP [dm3] 3L_4647908_SNP [dm6]	A	G	2.575e^-4	0.682	UPSTREAM CG32238 INTRON axo
3L	7437973	3L_7437973_SNP [dm3] 3L_7444873_SNP [dm6]	C	T	2.577e^-4	0.682	INTRON CG42458
3R	24487634	3R_24487634_DEL [dm3] 3R_28661912_DEL [dm6]	TA	T	2.577e^-4	0.682	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	7576028	X_7576028_SNP [dm3] X_7681995_SNP [dm6]	G	A	2.581e^-4	0.682	UPSTREAM CR45665 DOWNSTREAM CHES-1-like INTERGENIC
3R	26949519	3R_26949519_SNP [dm3] 3R_31123797_SNP [dm6]	T	C	2.583e^-4	0.682	UPSTREAM Prosalpha3T INTERGENIC
X	11038540	X_11038540_SNP [dm3] X_11144507_SNP [dm6]	T	C	2.597e^-4	0.683	DOWNSTREAM CG15202 & 1 other INTRON CG15201	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7255299	2R_7255299_SNP [dm3] 2R_11367794_SNP [dm6]	A	G	2.599e^-4	0.683	UPSTREAM CG13204 INTRON CG13204	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	13803032	3R_13803032_SNP [dm3] 3R_17977310_SNP [dm6]	C	T	2.606e^-4	0.683	INTRON cpo
2L	11523342	2L_11523342_SNP [dm3] 2L_11523342_SNP [dm6]	G	A	2.608e^-4	0.683	UTR_3_PRIME CG31705 UPSTREAM CG43153	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4873268	3L_4873268_SNP [dm3] 3L_4873268_SNP [dm6]	T	C	2.612e^-4	0.683	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12418787	3L_12418787_SNP [dm3] 3L_12425687_SNP [dm6]	C	T	2.618e^-4	0.683	INTRON toe
2R	10213687	2R_10213687_SNP [dm3] 2R_14326182_SNP [dm6]	G	A	2.618e^-4	0.683	INTRON Shroom	TF binding site mE1_TFBS_inv
3L	541979	3L_541979_SNP [dm3] 3L_541979_SNP [dm6]	A	G	2.619e^-4	0.683	DOWNSTREAM Cypl INTRON CG17180	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	6344209	3R_6344209_SNP [dm3] 3R_10518487_SNP [dm6]	G	A	2.620e^-4	0.683	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5916080	X_5916080_SNP [dm3] X_6022047_SNP [dm6]	A	G	2.633e^-4	0.685	INTERGENIC
X	3870722	X_3870722_SNP [dm3] X_3976689_SNP [dm6]	C	T	2.637e^-4	0.685	INTERGENIC
3L	4872356	3L_4872356_SNP [dm3] 3L_4872356_SNP [dm6]	G	A	2.642e^-4	0.685	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20243126	2L_20243126_SNP [dm3] 2L_20243126_SNP [dm6]	T	C	2.646e^-4	0.685	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	15506105	2L_15506105_SNP [dm3] 2L_15506105_SNP [dm6]	C	T	2.647e^-4	0.685	INTERGENIC
2R	17086450	2R_17086450_DEL [dm3] 2R_21198945_DEL [dm6]	AT	A	2.650e^-4	0.685	INTRON Lapsyn
3R	20693010	3R_20693010_INS [dm3] 3R_24867288_INS [dm6]	C	CAC	2.653e^-4	0.685	UTR_3_PRIME Ela DOWNSTREAM Ela & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	547857	3L_547857_SNP [dm3] 3L_547857_SNP [dm6]	T	C	2.664e^-4	0.685	NON_SYNONYMOUS_CODING hipk	TF binding site BDTNP1_TFBS_dl
3L	3439399	3L_3439399_SNP [dm3] 3L_3439399_SNP [dm6]	T	C	2.666e^-4	0.685	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	20258098	2L_20258098_DEL [dm3] 2L_20258098_DEL [dm6]	ATCCTC	A	2.678e^-4	0.685	UPSTREAM CG17571 INTERGENIC
2L	19391532	2L_19391532_SNP [dm3] 2L_19391532_SNP [dm6]	G	T	2.679e^-4	0.685	SYNONYMOUS_CODING CG17544	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18834367	X_18834367_SNP [dm3] X_18940334_SNP [dm6]	C	T	2.681e^-4	0.685	INTRON CG43759	TF binding site mE1_TFBS_HSA
X	5912605	X_5912605_SNP [dm3] X_6018572_SNP [dm6]	T	A	2.682e^-4	0.685	INTERGENIC	TF binding site mE1_TFBS_sens
2L	10102500	2L_10102500_SNP [dm3] 2L_10102500_SNP [dm6]	T	C	2.684e^-4	0.685	INTRON CG44153 & 1 other
2L	13730630	2L_13730630_SNP [dm3] 2L_13730630_SNP [dm6]	G	A	2.685e^-4	0.685	INTERGENIC
3L	597524	3L_597524_SNP [dm3] 3L_597524_SNP [dm6]	A	T	2.686e^-4	0.685	SYNONYMOUS_CODING MED14	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9744744	3L_9744744_SNP [dm3] 3L_9751644_SNP [dm6]	C	T	2.692e^-4	0.685	UPSTREAM CG42268 INTRON CG42268	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	686531	3L_686531_SNP [dm3] 3L_686531_SNP [dm6]	G	A	2.694e^-4	0.685	SPLICE_SITE_REGION CG3344 UPSTREAM ebd1 INTRON CG3344	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens mE1_TFBS_Trl
2R	10127478	2R_10127478_SNP [dm3] 2R_14239973_SNP [dm6]	A	T	2.706e^-4	0.687	UTR_5_PRIME CG8494 UPSTREAM CG8485	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	14236115	3R_14236115_SNP [dm3] 3R_18410393_SNP [dm6]	C	T	2.721e^-4	0.69	SYNONYMOUS_CODING CG10864 UPSTREAM CG31122 INTRON CG31122	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12823618	3L_12823618_SNP [dm3] 3L_12830518_SNP [dm6]	G	T	2.728e^-4	0.69	INTRON CG10960	TF binding site mE1_TFBS_cnc
2L	9171571	2L_9171571_SNP [dm3] 2L_9171571_SNP [dm6]	C	G	2.739e^-4	0.69	INTRON tai
2R	20000870	2R_20000870_SNP [dm3] 2R_24113347_SNP [dm6]	A	C	2.745e^-4	0.69	INTRON CG4049	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	19039672	3R_19039672_SNP [dm3] 3R_23213950_SNP [dm6]	T	G	2.750e^-4	0.69	INTRON cnc	TF binding site mE1_TFBS_HSA
3R	19020739	3R_19020739_SNP [dm3] 3R_23195017_SNP [dm6]	T	G	2.751e^-4	0.69	INTRON cnc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	10808986	3R_10808986_SNP [dm3] 3R_14983264_SNP [dm6]	G	T	2.752e^-4	0.69	INTERGENIC
2R	4683222	2R_4683222_SNP [dm3] 2R_8795717_SNP [dm6]	C	A	2.754e^-4	0.69	INTERGENIC
2L	20313896	2L_20313896_SNP [dm3] 2L_20313896_SNP [dm6]	C	A	2.755e^-4	0.69	INTRON spir
2R	7693525	2R_7693525_SNP [dm3] 2R_11806020_SNP [dm6]	A	G	2.757e^-4	0.69	INTRON ths
3L	544961	3L_544961_SNP [dm3] 3L_544961_SNP [dm6]	C	T	2.780e^-4	0.691	INTRON hipk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	8731649	3R_8731649_SNP [dm3] 3R_12905927_SNP [dm6]	C	T	2.787e^-4	0.691	INTERGENIC
X	10863167	X_10863167_SNP [dm3] X_10969134_SNP [dm6]	C	A	2.790e^-4	0.691	NON_SYNONYMOUS_CODING CG42339
2L	11038224	2L_11038224_SNP [dm3] 2L_11038224_SNP [dm6]	C	T	2.792e^-4	0.691	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	15366467	3R_15366467_SNP [dm3] 3R_19540745_SNP [dm6]	A	G	2.795e^-4	0.691	INTRON Dys
2L	13756797	2L_13756797_SNP [dm3] 2L_13756797_SNP [dm6]	A	T	2.795e^-4	0.691	DOWNSTREAM CR44846 INTRON TM9SF4
3R	14421337	3R_14421337_SNP [dm3] 3R_18595615_SNP [dm6]	A	C	2.799e^-4	0.691	SYNONYMOUS_CODING CG14304 INTRON qin & 1 other
2L	14967754	2L_14967754_SNP [dm3] 2L_14967754_SNP [dm6]	T	G	2.800e^-4	0.691	INTRON CG42313
3L	530455	3L_530455_SNP [dm3] 3L_530455_SNP [dm6]	A	G	2.801e^-4	0.691	INTRON klar
3L	5939476	3L_5939476_SNP [dm3] 3L_5946376_SNP [dm6]	G	T	2.805e^-4	0.691	INTRON CG33993	TF binding site BDTNP1_TFBS_twi
2L	19927180	2L_19927180_SNP [dm3] 2L_19927180_SNP [dm6]	T	A	2.808e^-4	0.691	INTRON sick
2R	20205871	2R_20205871_INS [dm3] 2R_24318348_INS [dm6]	C	CACTGCTC	2.812e^-4	0.691	INTERGENIC
2R	4280298	2R_4280298_SNP [dm3] 2R_8392793_SNP [dm6]	A	G	2.816e^-4	0.691	INTRON pdm3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20146234	2R_20146234_SNP [dm3] 2R_24258711_SNP [dm6]	G	T	2.818e^-4	0.691	INTRON CG3376
3R	4771958	3R_4771958_SNP [dm3] 3R_8946236_SNP [dm6]	G	T	2.820e^-4	0.691	INTERGENIC
3L	8068951	3L_8068951_SNP [dm3] 3L_8075851_SNP [dm6]	A	T	2.821e^-4	0.691	INTRON Ect4
3L	8870215	3L_8870215_SNP [dm3] 3L_8877115_SNP [dm6]	C	T	2.826e^-4	0.691	INTRON dally
3R	26151252	3R_26151252_SNP [dm3] 3R_30325530_SNP [dm6]	A	T	2.835e^-4	0.691	INTRON hdc	TF binding site mE1_TFBS_chinmo
2R	3105252	2R_3105252_SNP [dm3] 2R_7217747_SNP [dm6]	T	A	2.836e^-4	0.691	INTRON pk	TF binding site mE1_TFBS_cad
2R	9842001	2R_9842001_SNP [dm3] 2R_13954496_SNP [dm6]	T	C	2.837e^-4	0.691	UPSTREAM CG33155 & 1 other INTRON AGO1 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2R	17584882	2R_17584882_SNP [dm3] 2R_21697377_SNP [dm6]	C	T	2.839e^-4	0.691	UPSTREAM CngB DOWNSTREAM HmgZ INTERGENIC
2L	2310834	2L_2310834_SNP [dm3] 2L_2310834_SNP [dm6]	G	A	2.849e^-4	0.691	UTR_5_PRIME CG9967 UPSTREAM eys
2L	20379286	2L_20379286_SNP [dm3] 2L_20379286_SNP [dm6]	G	T	2.851e^-4	0.691	NON_SYNONYMOUS_CODING CG16798
3R	4856287	3R_4856287_SNP [dm3] 3R_9030565_SNP [dm6]	A	T	2.852e^-4	0.691	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15949943	3R_15949943_SNP [dm3] 3R_20124221_SNP [dm6]	C	T	2.854e^-4	0.691	INTERGENIC
2R	10417980	2R_10417980_SNP [dm3] 2R_14530475_SNP [dm6]	A	C	2.857e^-4	0.691	INTRON ttv
3L	10289636	3L_10289636_SNP [dm3] 3L_10296536_SNP [dm6]	C	A	2.857e^-4	0.691	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25523257	3R_25523257_SNP [dm3] 3R_29697535_SNP [dm6]	G	A	2.863e^-4	0.691	DOWNSTREAM dmrt99B INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15812834	X_15812834_SNP [dm3] X_15918801_SNP [dm6]	A	C	2.867e^-4	0.691	SYNONYMOUS_CODING CG8909
2L	10618590	2L_10618590_SNP [dm3] 2L_10618590_SNP [dm6]	A	C	2.870e^-4	0.691	INTRON Trim9
3L	9746857	3L_9746857_SNP [dm3] 3L_9753757_SNP [dm6]	G	A	2.874e^-4	0.691	INTRON CG42268
2L	20126742	2L_20126742_INS [dm3] 2L_20126742_INS [dm6]	A	AA	2.879e^-4	0.691	INTERGENIC
3L	7035208	3L_7035208_SNP [dm3] 3L_7042108_SNP [dm6]	T	G	2.886e^-4	0.692	INTRON Mp
2L	20293934	2L_20293934_SNP [dm3] 2L_20293934_SNP [dm6]	T	C	2.892e^-4	0.692	UPSTREAM CG12617 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	16515462	2R_16515462_SNP [dm3] 2R_20627957_SNP [dm6]	G	C	2.902e^-4	0.692	NON_SYNONYMOUS_CODING CG16742 DOWNSTREAM Rcd6
2L	20038022	2L_20038022_INS [dm3] 2L_20038022_INS [dm6]	G	GGGT	2.902e^-4	0.692	INTRON sNPF
3R	21775352	3R_21775352_SNP [dm3] 3R_25949630_SNP [dm6]	G	A	2.906e^-4	0.692	INTRON CCAP-R
3R	26949246	3R_26949246_DEL [dm3] 3R_31123524_DEL [dm6]	TTGCATTTAAACATAAT...	T	2.908e^-4	0.692	UPSTREAM Prosalpha3T INTERGENIC
2R	18972461	2R_18972461_SNP [dm3] 2R_23084938_SNP [dm6]	A	G	2.909e^-4	0.692	DOWNSTREAM CG9877 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	21738250	3R_21738250_SNP [dm3] 3R_25912528_SNP [dm6]	C	T	2.916e^-4	0.692	SYNONYMOUS_CODING CG42235 INTRON CG42235
3L	4872039	3L_4872039_SNP [dm3] 3L_4872039_SNP [dm6]	T	C	2.928e^-4	0.692	INTRON CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11428120	2L_11428120_SNP [dm3] 2L_11428120_SNP [dm6]	G	T	2.935e^-4	0.692	INTERGENIC
3L	14533619	3L_14533619_DEL [dm3] 3L_14540519_DEL [dm6]	GATCG	G	2.938e^-4	0.692	DOWNSTREAM CG9238 & 1 other INTERGENIC
2R	8921196	2R_8921196_SNP [dm3] 2R_13033691_SNP [dm6]	A	C	2.940e^-4	0.692	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	8005523	X_8005523_SNP [dm3] X_8111490_SNP [dm6]	G	A	2.946e^-4	0.692	INTRON Gclc
2L	20123089	2L_20123089_SNP [dm3] 2L_20123089_SNP [dm6]	G	C	2.950e^-4	0.692	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	19888191	2L_19888191_SNP [dm3] 2L_19888191_SNP [dm6]	C	A	2.954e^-4	0.692	INTRON sick	TF binding site mE1_TFBS_bab1
3R	23035392	3R_23035392_SNP [dm3] 3R_27209670_SNP [dm6]	A	C	2.956e^-4	0.692	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20650343	2L_20650343_SNP [dm3] 2L_20650343_SNP [dm6]	G	A	2.958e^-4	0.692	SYNONYMOUS_CODING CG2611 DOWNSTREAM bru & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	19621583	3R_19621583_SNP [dm3] 3R_23795861_SNP [dm6]	G	T	2.959e^-4	0.692	INTRON mbc
3L	3866234	3L_3866234_SNP [dm3] 3L_3866234_SNP [dm6]	G	T	2.961e^-4	0.692	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4006930	2R_4006930_SNP [dm3] 2R_8119425_SNP [dm6]	T	C	2.963e^-4	0.692	SYNONYMOUS_CODING Asap	TF binding site mE1_TFBS_cad
3R	10791515	3R_10791515_SNP [dm3] 3R_14965793_SNP [dm6]	T	C	2.963e^-4	0.692	INTERGENIC
2R	19983024	2R_19983024_SNP [dm3] 2R_24095501_SNP [dm6]	T	G	2.964e^-4	0.692	NON_SYNONYMOUS_CODING gek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26982549	3R_26982549_SNP [dm3] 3R_31156827_SNP [dm6]	A	G	2.977e^-4	0.693	INTRON Gycbeta100B
2R	20142861	2R_20142861_SNP [dm3] 2R_24255338_SNP [dm6]	C	T	2.979e^-4	0.693	UTR_5_PRIME CG13575 DOWNSTREAM nord	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	11839485	X_11839485_SNP [dm3] X_11945452_SNP [dm6]	T	C	2.983e^-4	0.693	INTRON cac
2L	6780105	2L_6780105_SNP [dm3] 2L_6780105_SNP [dm6]	C	T	2.986e^-4	0.693	SYNONYMOUS_CODING nrv1
2R	18631077	2R_18631077_DEL [dm3] 2R_22743572_DEL [dm6]	TT	T	2.993e^-4	0.693	UTR_3_PRIME CG42260	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	16691139	X_16691139_SNP [dm3] X_16797106_SNP [dm6]	T	A	2.995e^-4	0.693	UTR_3_PRIME CG9132 DOWNSTREAM CG9132 & 1 other
3L	4419401	3L_4419401_SNP [dm3] 3L_4419401_SNP [dm6]	C	A	2.998e^-4	0.693	INTRON DOR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8702772	X_8702772_SNP [dm3] X_8808739_SNP [dm6]	A	T	3.002e^-4	0.693	INTERGENIC
2R	17237392	2R_17237392_SNP [dm3] 2R_21349887_SNP [dm6]	A	C	3.008e^-4	0.693	INTRON CG17974
3R	26940798	3R_26940798_SNP [dm3] 3R_31115076_SNP [dm6]	C	T	3.009e^-4	0.693	INTERGENIC
2L	12578209	2L_12578209_SNP [dm3] 2L_12578209_SNP [dm6]	C	A	3.016e^-4	0.693	INTERGENIC
2L	11703381	2L_11703381_SNP [dm3] 2L_11703381_SNP [dm6]	G	C	3.020e^-4	0.693	INTERGENIC
3R	8020797	3R_8020797_SNP [dm3] 3R_12195075_SNP [dm6]	T	A	3.035e^-4	0.693	UPSTREAM CG43450 & 1 other INTERGENIC
3L	8201579	3L_8201579_SNP [dm3] 3L_8208479_SNP [dm6]	C	T	3.036e^-4	0.693	INTERGENIC
3R	6791185	3R_6791185_SNP [dm3] 3R_10965463_SNP [dm6]	A	C	3.037e^-4	0.693	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6910070	3L_6910070_SNP [dm3] 3L_6916970_SNP [dm6]	T	A	3.040e^-4	0.693	INTERGENIC
3L	13019846	3L_13019846_SNP [dm3] 3L_13026746_SNP [dm6]	T	A	3.043e^-4	0.693	UPSTREAM Zmynd10 INTERGENIC
2L	20135767	2L_20135767_SNP [dm3] 2L_20135767_SNP [dm6]	C	G	3.043e^-4	0.693	UPSTREAM CG10651 INTERGENIC
2R	20718933	2R_20718933_SNP [dm3] 2R_24831410_SNP [dm6]	G	A	3.045e^-4	0.693	INTRON Dll	TF binding site mE1_TFBS_chinmo
2R	15057364	2R_15057364_SNP [dm3] 2R_19169859_SNP [dm6]	A	T	3.046e^-4	0.693	UPSTREAM CG10737 INTRON CG10737	TF binding site mE1_TFBS_Trl
2L	3391042	2L_3391042_SNP [dm3] 2L_3391042_SNP [dm6]	G	A	3.047e^-4	0.693	INTERGENIC
3R	8731586	3R_8731586_SNP [dm3] 3R_12905864_SNP [dm6]	T	G	3.047e^-4	0.693	INTERGENIC
X	12936736	X_12936736_SNP [dm3] X_13042703_SNP [dm6]	A	T	3.051e^-4	0.693	INTRON rad
3R	16746181	3R_16746181_SNP [dm3] 3R_20920459_SNP [dm6]	C	G	3.053e^-4	0.693	INTRON CG31191 & 1 other
3R	25251140	3R_25251140_DEL [dm3] 3R_29425418_DEL [dm6]	CCGCA	C	3.060e^-4	0.693	INTRON Ptp99A
X	8029220	X_8029220_SNP [dm3] X_8135187_SNP [dm6]	G	A	3.062e^-4	0.693	UPSTREAM CG2120 DOWNSTREAM CG10958 INTRON cyr
3L	4831663	3L_4831663_SNP [dm3] 3L_4831663_SNP [dm6]	G	A	3.066e^-4	0.693	SYNONYMOUS_CODING CG13708	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4871975	3L_4871975_SNP [dm3] 3L_4871975_SNP [dm6]	A	G	3.071e^-4	0.693	INTRON CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	972901	2L_972901_SNP [dm3] 2L_972901_SNP [dm6]	T	A	3.086e^-4	0.694	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	10796751	3R_10796751_SNP [dm3] 3R_14971029_SNP [dm6]	A	C	3.088e^-4	0.694	INTERGENIC
3R	13961923	3R_13961923_SNP [dm3] 3R_18136201_SNP [dm6]	G	A	3.095e^-4	0.694	DOWNSTREAM sr INTERGENIC
X	3663359	X_3663359_SNP [dm3] X_3769326_SNP [dm6]	C	T	3.095e^-4	0.694	INTRON tlk	TF binding site BDTNP1_TFBS_dl
X	12331673	X_12331673_SNP [dm3] X_12437640_SNP [dm6]	T	C	3.099e^-4	0.694	INTRON Pkcdelta
3R	16580447	3R_16580447_SNP [dm3] 3R_20754725_SNP [dm6]	G	A	3.100e^-4	0.694	INTRON CG42322
3R	18612661	3R_18612661_INS [dm3] 3R_22786939_INS [dm6]	T	TT	3.103e^-4	0.694	INTRON CG7029	TF binding site mE1_TFBS_chinmo
2L	4955814	2L_4955814_SNP [dm3] 2L_4955814_SNP [dm6]	A	T	3.105e^-4	0.694	NON_SYNONYMOUS_CODING Marcal1 UPSTREAM Jon25Bi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	17762010	3R_17762010_DEL [dm3] 3R_21936288_DEL [dm6]	ACGCCA	A	3.110e^-4	0.694	INTERGENIC
X	15558896	X_15558896_INS [dm3] X_15664863_INS [dm6]	C	CCC	3.123e^-4	0.694	SPLICE_SITE_ACCEPTOR CR43299 INTRON CR43299 EXON CR43299
X	3873502	X_3873502_SNP [dm3] X_3979469_SNP [dm6]	C	T	3.128e^-4	0.694	INTERGENIC
2R	14269157	2R_14269157_SNP [dm3] 2R_18381652_SNP [dm6]	T	C	3.139e^-4	0.694	INTRON CG43202	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6849644	3R_6849644_SNP [dm3] 3R_11023922_SNP [dm6]	G	C	3.144e^-4	0.694	INTRON CG34114
2R	10257847	2R_10257847_INS [dm3] 2R_14370342_INS [dm6]	C	CAC	3.149e^-4	0.694	UTR_3_PRIME Obp50a UPSTREAM Obp50b & 1 other DOWNSTREAM CG34444
3L	7098124	3L_7098124_SNP [dm3] 3L_7105024_SNP [dm6]	G	A	3.151e^-4	0.694	INTRON form3
3R	11534110	3R_11534110_MNP [dm3] 3R_15708388_MNP [dm6]	CAAAA	AGTTG	3.151e^-4	0.694	UTR_3_PRIME CG5404
3L	10764721	3L_10764721_INS [dm3] 3L_10771621_INS [dm6]	A	AA	3.154e^-4	0.694	UPSTREAM CG43245 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	549488	3L_549488_SNP [dm3] 3L_549488_SNP [dm6]	T	G	3.161e^-4	0.694	INTRON hipk	TF binding site BDTNP1_TFBS_dl
2L	20390016	2L_20390016_SNP [dm3] 2L_20390016_SNP [dm6]	C	A	3.162e^-4	0.694	INTRON CG10947	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11134008	2L_11134008_SNP [dm3] 2L_11134008_SNP [dm6]	A	G	3.163e^-4	0.694	SYNONYMOUS_CODING CG4751	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20353297	2L_20353297_SNP [dm3] 2L_20353297_SNP [dm6]	C	T	3.164e^-4	0.694	UPSTREAM snoRNA:Me28S-A3365 & 1 other INTRON RtGEF
2R	19127053	2R_19127053_SNP [dm3] 2R_23239530_SNP [dm6]	G	C	3.164e^-4	0.694	INTERGENIC
X	22098967	X_22098967_SNP [dm3] X_22697131_SNP [dm6]	A	C	3.165e^-4	0.694	INTRON CR44997
2R	14269763	2R_14269763_DEL [dm3] 2R_18382258_DEL [dm6]	CG	C	3.165e^-4	0.694	UPSTREAM CG43202 DOWNSTREAM IM23 INTERGENIC
3L	3128147	3L_3128147_SNP [dm3] 3L_3128147_SNP [dm6]	C	G	3.174e^-4	0.695	UTR_3_PRIME CG11537 UPSTREAM prominin-like DOWNSTREAM CG11537	TF binding site BDTNP1_TFBS_dl
2L	20146910	2L_20146910_SNP [dm3] 2L_20146910_SNP [dm6]	T	C	3.178e^-4	0.695	INTERGENIC
X	7696211	X_7696211_SNP [dm3] X_7802178_SNP [dm6]	A	G	3.179e^-4	0.695	INTERGENIC
2L	12257147	2L_12257147_SNP [dm3] 2L_12257147_SNP [dm6]	G	T	3.181e^-4	0.695	INTRON aret
2R	4683332	2R_4683332_SNP [dm3] 2R_8795827_SNP [dm6]	A	G	3.186e^-4	0.695	INTERGENIC
3R	17809423	3R_17809423_SNP [dm3] 3R_21983701_SNP [dm6]	C	A	3.194e^-4	0.696	INTRON Eip93F
3R	2854745	3R_2854745_DEL [dm3] 3R_7029023_DEL [dm6]	GATAGAAATCTTATAGATAT...	A	3.203e^-4	0.696	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	2782756	X_2782756_SNP [dm3] X_2888723_SNP [dm6]	T	A	3.206e^-4	0.696	INTRON kirre
3R	21630253	3R_21630253_SNP [dm3] 3R_25804531_SNP [dm6]	C	T	3.207e^-4	0.696	INTERGENIC
3L	1108809	3L_1108809_SNP [dm3] 3L_1108809_SNP [dm6]	T	A	3.211e^-4	0.696	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21131784	2L_21131784_SNP [dm3] 2L_21131784_SNP [dm6]	A	G	3.212e^-4	0.696	UTR_3_PRIME Nhe2 INTRON Nhe2
2L	12257110	2L_12257110_SNP [dm3] 2L_12257110_SNP [dm6]	G	A	3.222e^-4	0.696	INTRON aret
3R	10430374	3R_10430374_SNP [dm3] 3R_14604652_SNP [dm6]	T	A	3.225e^-4	0.696	INTRON stumps	TF binding site mE1_TFBS_cad
3L	6910133	3L_6910133_SNP [dm3] 3L_6917033_SNP [dm6]	A	C	3.225e^-4	0.696	INTERGENIC
2R	20718304	2R_20718304_SNP [dm3] 2R_24830781_SNP [dm6]	T	C	3.246e^-4	0.696	INTRON Dll	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12460163	2R_12460163_SNP [dm3] 2R_16572658_SNP [dm6]	A	T	3.247e^-4	0.696	INTRON CG4927
3R	19424603	3R_19424603_SNP [dm3] 3R_23598881_SNP [dm6]	G	C	3.258e^-4	0.696	NON_SYNONYMOUS_CODING CG10183
2R	10194078	2R_10194078_SNP [dm3] 2R_14306573_SNP [dm6]	T	C	3.260e^-4	0.696	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_Trl
3L	8243419	3L_8243419_SNP [dm3] 3L_8250319_SNP [dm6]	T	G	3.263e^-4	0.696	INTRON Dscam4	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20136566	2L_20136566_SNP [dm3] 2L_20136566_SNP [dm6]	G	T	3.266e^-4	0.696	INTERGENIC
3L	15658960	3L_15658960_SNP [dm3] 3L_15665860_SNP [dm6]	A	G	3.266e^-4	0.696	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15112397	3L_15112397_SNP [dm3] 3L_15119297_SNP [dm6]	A	G	3.272e^-4	0.696	NON_SYNONYMOUS_CODING Cep135 DOWNSTREAM CG16959	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	17806411	3R_17806411_SNP [dm3] 3R_21980689_SNP [dm6]	C	G	3.280e^-4	0.696	INTRON Eip93F
2L	21111466	2L_21111466_SNP [dm3] 2L_21111466_SNP [dm6]	G	C	3.289e^-4	0.696	INTRON Nhe2
3L	7640771	3L_7640771_SNP [dm3] 3L_7647671_SNP [dm6]	A	G	3.298e^-4	0.696	INTERGENIC
3L	7641233	3L_7641233_INS [dm3] 3L_7648133_INS [dm6]	T	ACA	3.298e^-4	0.696	INTERGENIC
2R	3327576	2R_3327576_SNP [dm3] 2R_7440071_SNP [dm6]	A	T	3.303e^-4	0.696	UPSTREAM CG11123 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4218906	3R_4218906_DEL [dm3] 3R_8393184_DEL [dm6]	CC	C	3.304e^-4	0.696	INTRON CG45263	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13152856	3R_13152856_SNP [dm3] 3R_17327134_SNP [dm6]	C	T	3.305e^-4	0.696	INTRON beat-IIa
2L	10047415	2L_10047415_SNP [dm3] 2L_10047415_SNP [dm6]	C	T	3.305e^-4	0.696	INTERGENIC
2L	10305120	2L_10305120_SNP [dm3] 2L_10305120_SNP [dm6]	A	G	3.306e^-4	0.696	INTRON CG5390	TF binding site mE1_TFBS_cad
3L	5910851	3L_5910851_SNP [dm3] 3L_5917751_SNP [dm6]	G	C	3.306e^-4	0.696	UPSTREAM CR45167 DOWNSTREAM CG10483 & 1 other INTERGENIC
3L	9228885	3L_9228885_SNP [dm3] 3L_9235785_SNP [dm6]	A	T	3.310e^-4	0.696	NON_SYNONYMOUS_CODING CG4483
2R	7181113	2R_7181113_SNP [dm3] 2R_11293608_SNP [dm6]	T	A	3.312e^-4	0.696	UPSTREAM dare DOWNSTREAM CG18336 & 2 others INTERGENIC
3R	5829792	3R_5829792_SNP [dm3] 3R_10004070_SNP [dm6]	A	G	3.315e^-4	0.696	INTRON Mical	TF binding site mE1_TFBS_inv
3R	24976041	3R_24976041_SNP [dm3] 3R_29150319_SNP [dm6]	A	G	3.327e^-4	0.696	NON_SYNONYMOUS_CODING ligatin DOWNSTREAM Pglym78	TF binding site mE1_TFBS_chinmo
2R	3776384	2R_3776384_DEL [dm3] 2R_7888879_DEL [dm6]	GAATTTTA	G	3.332e^-4	0.696	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	26108728	3R_26108728_SNP [dm3] 3R_30283006_SNP [dm6]	A	T	3.333e^-4	0.696	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	21111580	2L_21111580_DEL [dm3] 2L_21111580_DEL [dm6]	TCCAC	G	3.335e^-4	0.696	INTRON Nhe2
2L	21111586	2L_21111586_DEL [dm3] 2L_21111586_DEL [dm6]	TCCAC	T	3.335e^-4	0.696	INTRON Nhe2
2R	7182901	2R_7182901_SNP [dm3] 2R_11295396_SNP [dm6]	A	G	3.340e^-4	0.696	UPSTREAM CG18336 & 1 other INTRON CG42336	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6981207	3L_6981207_SNP [dm3] 3L_6988107_SNP [dm6]	T	C	3.341e^-4	0.696	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sbb
3R	18127663	3R_18127663_SNP [dm3] 3R_22301941_SNP [dm6]	C	T	3.342e^-4	0.696	INTRON CG7084
X	16094008	X_16094008_SNP [dm3] X_16199975_SNP [dm6]	C	T	3.344e^-4	0.696	INTERGENIC	TF binding site mE1_TFBS_inv
3R	1984080	3R_1984080_SNP [dm3] 3R_6158358_SNP [dm6]	G	T	3.348e^-4	0.696	INTERGENIC
3R	25453756	3R_25453756_SNP [dm3] 3R_29628034_SNP [dm6]	C	T	3.354e^-4	0.696	INTERGENIC
2R	4383623	2R_4383623_SNP [dm3] 2R_8496118_SNP [dm6]	T	C	3.355e^-4	0.696	INTRON mtt
2R	16692395	2R_16692395_SNP [dm3] 2R_20804890_SNP [dm6]	G	A	3.357e^-4	0.696	INTERGENIC
3L	6910055	3L_6910055_SNP [dm3] 3L_6916955_SNP [dm6]	T	C	3.362e^-4	0.696	INTERGENIC
3L	6395012	3L_6395012_SNP [dm3] 3L_6401912_SNP [dm6]	T	C	3.367e^-4	0.696	INTRON CG42747
3R	26790208	3R_26790208_SNP [dm3] 3R_30964486_SNP [dm6]	C	T	3.370e^-4	0.696	UPSTREAM Ctr1C INTERGENIC
3L	12821569	3L_12821569_SNP [dm3] 3L_12828469_SNP [dm6]	A	G	3.373e^-4	0.696	UPSTREAM CG10960 INTRON CG10960
X	12328862	X_12328862_SNP [dm3] X_12434829_SNP [dm6]	G	A	3.373e^-4	0.696	INTRON Pkcdelta
3L	5917882	3L_5917882_SNP [dm3] 3L_5924782_SNP [dm6]	A	G	3.376e^-4	0.696	INTRON Vap-33B
X	18972069	X_18972069_INS [dm3] X_19078036_INS [dm6]	G	GCGGCGG	3.378e^-4	0.696
3L	548186	3L_548186_SNP [dm3] 3L_548186_SNP [dm6]	C	A	3.380e^-4	0.696	INTRON hipk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	19316913	2R_19316913_SNP [dm3] 2R_23429390_SNP [dm6]	A	C	3.395e^-4	0.696	INTRON CG9815
3L	17239186	3L_17239186_SNP [dm3] 3L_17246086_SNP [dm6]	T	A	3.397e^-4	0.696	INTRON CR43870	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20292803	2L_20292803_SNP [dm3] 2L_20292803_SNP [dm6]	A	C	3.399e^-4	0.696	INTERGENIC
2L	20376524	2L_20376524_SNP [dm3] 2L_20376524_SNP [dm6]	C	T	3.399e^-4	0.696	DOWNSTREAM CG16798 INTERGENIC
X	12044276	X_12044276_SNP [dm3] X_12150243_SNP [dm6]	T	C	3.401e^-4	0.696	INTRON Ten-a
3R	1932530	3R_1932530_SNP [dm3] 3R_6106808_SNP [dm6]	G	A	3.410e^-4	0.696	INTERGENIC	regulatory region REDfly_CRMs
3L	687095	3L_687095_SNP [dm3] 3L_687095_SNP [dm6]	A	G	3.413e^-4	0.696	SYNONYMOUS_CODING CG3344	TF binding site mE1_TFBS_sens
2R	17237519	2R_17237519_SNP [dm3] 2R_21350014_SNP [dm6]	A	T	3.414e^-4	0.696	INTRON CG17974
2L	20213753	2L_20213753_SNP [dm3] 2L_20213753_SNP [dm6]	A	G	3.420e^-4	0.696	INTERGENIC	transposable element FlyBase
2R	17238014	2R_17238014_SNP [dm3] 2R_21350509_SNP [dm6]	C	A	3.425e^-4	0.696	UTR_5_PRIME CG17974
2L	8965758	2L_8965758_SNP [dm3] 2L_8965758_SNP [dm6]	C	T	3.426e^-4	0.696	INTRON CG32984
2R	10258019	2R_10258019_SNP [dm3] 2R_14370514_SNP [dm6]	G	A	3.433e^-4	0.696	SYNONYMOUS_CODING Obp50a UPSTREAM Obp50b & 1 other DOWNSTREAM CG34444
3L	5918064	3L_5918064_SNP [dm3] 3L_5924964_SNP [dm6]	T	C	3.434e^-4	0.696	SYNONYMOUS_CODING Vap-33B
2L	3119481	2L_3119481_SNP [dm3] 2L_3119481_SNP [dm6]	A	C	3.434e^-4	0.696	INTRON toc
2R	19916738	2R_19916738_SNP [dm3] 2R_24029215_SNP [dm6]	G	A	3.441e^-4	0.696	UPSTREAM CG3163 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	10359296	3R_10359296_SNP [dm3] 3R_14533574_SNP [dm6]	T	G	3.451e^-4	0.696	INTRON Pde6
3L	7640906	3L_7640906_SNP [dm3] 3L_7647806_SNP [dm6]	C	G	3.451e^-4	0.696	INTERGENIC
2R	14271225	2R_14271225_SNP [dm3] 2R_18383720_SNP [dm6]	T	G	3.455e^-4	0.696	UPSTREAM IM1 & 2 others INTERGENIC
3L	690287	3L_690287_INS [dm3] 3L_690287_INS [dm6]	T	TGCTTAGGTATAAAATTCCC...	3.457e^-4	0.696	UPSTREAM RabX6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8029210	X_8029210_SNP [dm3] X_8135177_SNP [dm6]	A	T	3.458e^-4	0.696	UPSTREAM CG2120 DOWNSTREAM CG10958 INTRON cyr
3L	6910078	3L_6910078_SNP [dm3] 3L_6916978_SNP [dm6]	T	A	3.460e^-4	0.696	INTERGENIC
3R	24502612	3R_24502612_DEL [dm3] 3R_28676890_DEL [dm6]	ATA	A	3.461e^-4	0.696	INTRON CG9990
3R	15949927	3R_15949927_SNP [dm3] 3R_20124205_SNP [dm6]	A	G	3.466e^-4	0.696	INTERGENIC
3R	6849636	3R_6849636_SNP [dm3] 3R_11023914_SNP [dm6]	T	C	3.471e^-4	0.696	INTRON CG34114
X	8297829	X_8297829_SNP [dm3] X_8403796_SNP [dm6]	C	G	3.487e^-4	0.696	UTR_3_PRIME CG10555 DOWNSTREAM CG11190	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3662236	X_3662236_SNP [dm3] X_3768203_SNP [dm6]	G	T	3.488e^-4	0.696	INTRON tlk
3L	6395013	3L_6395013_SNP [dm3] 3L_6401913_SNP [dm6]	G	A	3.492e^-4	0.696	INTRON CG42747
2R	19999759	2R_19999759_SNP [dm3] 2R_24112236_SNP [dm6]	G	A	3.509e^-4	0.696	SYNONYMOUS_CODING CG4049	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8588593	2R_8588593_SNP [dm3] 2R_12701088_SNP [dm6]	A	G	3.512e^-4	0.696	DOWNSTREAM wuc INTERGENIC
2R	18972454	2R_18972454_SNP [dm3] 2R_23084931_SNP [dm6]	G	A	3.512e^-4	0.696	DOWNSTREAM CG9877 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	6910049	3L_6910049_DEL [dm3] 3L_6916949_DEL [dm6]	AGAG	A	3.519e^-4	0.696	INTERGENIC
3L	2835384	3L_2835384_SNP [dm3] 3L_2835384_SNP [dm6]	G	A	3.526e^-4	0.696	INTRON CG43444
X	5440279	X_5440279_SNP [dm3] X_5546246_SNP [dm6]	C	T	3.527e^-4	0.696	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	1416761	2L_1416761_SNP [dm3] 2L_1416761_SNP [dm6]	G	T	3.529e^-4	0.696	INTRON lea	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	4717976	3R_4717976_SNP [dm3] 3R_8892254_SNP [dm6]	T	C	3.529e^-4	0.696	INTRON pyd
3R	26129362	3R_26129362_SNP [dm3] 3R_30303640_SNP [dm6]	G	A	3.529e^-4	0.696	INTRON hdc
3R	8355329	3R_8355329_SNP [dm3] 3R_12529607_SNP [dm6]	C	T	3.530e^-4	0.696	DOWNSTREAM Hug INTRON Octbeta3R
2R	3327530	2R_3327530_SNP [dm3] 2R_7440025_SNP [dm6]	A	G	3.536e^-4	0.696	UPSTREAM CG11123 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16122149	3L_16122149_SNP [dm3] 3L_16129049_SNP [dm6]	A	C	3.554e^-4	0.696	UPSTREAM Pgm & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	7341978	2R_7341978_SNP [dm3] 2R_11454473_SNP [dm6]	G	A	3.557e^-4	0.696	SPLICE_SITE_REGION E_Pc_ INTRON E_Pc_	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	4723051	3R_4723051_SNP [dm3] 3R_8897329_SNP [dm6]	G	T	3.557e^-4	0.696	INTRON pyd
3R	9931820	3R_9931820_SNP [dm3] 3R_14106098_SNP [dm6]	C	T	3.560e^-4	0.696	INTRON CG12402
3R	11534104	3R_11534104_DEL [dm3] 3R_15708382_DEL [dm6]	AC	A	3.562e^-4	0.696	UTR_3_PRIME CG5404
3R	11534107	3R_11534107_SNP [dm3] 3R_15708385_SNP [dm6]	T	C	3.562e^-4	0.696	UTR_3_PRIME CG5404
2L	13976705	2L_13976705_SNP [dm3] 2L_13976705_SNP [dm6]	A	C	3.564e^-4	0.696	START_GAINED NimC1 UTR_5_PRIME NimC1 UPSTREAM NimC1 & 1 other
3R	18001996	3R_18001996_INS [dm3] 3R_22176274_INS [dm6]	T	TT	3.565e^-4	0.696	INTRON SKIP
X	16064987	X_16064987_SNP [dm3] X_16170954_SNP [dm6]	T	C	3.565e^-4	0.696	INTERGENIC
2L	4957402	2L_4957402_SNP [dm3] 2L_4957402_SNP [dm6]	T	A	3.579e^-4	0.696	SPLICE_SITE_REGION Marcal1 INTRON Marcal1
3L	6910126	3L_6910126_SNP [dm3] 3L_6917026_SNP [dm6]	C	A	3.585e^-4	0.696	INTERGENIC
2L	20374844	2L_20374844_SNP [dm3] 2L_20374844_SNP [dm6]	G	A	3.586e^-4	0.696	UPSTREAM Ugt37a1 INTERGENIC
3L	6910058	3L_6910058_SNP [dm3] 3L_6916958_SNP [dm6]	G	T	3.589e^-4	0.696	INTERGENIC
2L	21106881	2L_21106881_SNP [dm3] 2L_21106881_SNP [dm6]	T	G	3.590e^-4	0.696	UPSTREAM Nhe2 INTRON Nhe2 EXON CR44056	TF binding site BDTNP1_TFBS_dl
3R	19034126	3R_19034126_SNP [dm3] 3R_23208404_SNP [dm6]	C	G	3.591e^-4	0.696	INTRON cnc
3L	690350	3L_690350_SNP [dm3] 3L_690350_SNP [dm6]	A	C	3.591e^-4	0.696	UPSTREAM RabX6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13756801	2L_13756801_SNP [dm3] 2L_13756801_SNP [dm6]	C	A	3.591e^-4	0.696	DOWNSTREAM CR44846 INTRON TM9SF4
X	3888666	X_3888666_SNP [dm3] X_3994633_SNP [dm6]	A	C	3.598e^-4	0.696	INTERGENIC
3R	25349095	3R_25349095_SNP [dm3] 3R_29523373_SNP [dm6]	G	A	3.600e^-4	0.696	INTERGENIC	TF binding site mE1_TFBS_sens
2R	16918828	2R_16918828_SNP [dm3] 2R_21031323_SNP [dm6]	T	C	3.601e^-4	0.696	INTERGENIC
2R	4297824	2R_4297824_SNP [dm3] 2R_8410319_SNP [dm6]	A	T	3.603e^-4	0.696	INTRON CG2121
3R	10156762	3R_10156762_SNP [dm3] 3R_14331040_SNP [dm6]	T	C	3.607e^-4	0.696	SYNONYMOUS_CODING NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18647639	2R_18647639_SNP [dm3] 2R_22760134_SNP [dm6]	G	T	3.609e^-4	0.696	SYNONYMOUS_CODING CG42260 INTRON CG42260	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26118834	3R_26118834_SNP [dm3] 3R_30293112_SNP [dm6]	A	T	3.611e^-4	0.696	INTRON hdc
3L	2203282	3L_2203282_SNP [dm3] 3L_2203282_SNP [dm6]	C	T	3.614e^-4	0.696	INTERGENIC
3L	104693	3L_104693_SNP [dm3] 3L_104693_SNP [dm6]	C	T	3.617e^-4	0.696	INTERGENIC
2L	9170020	2L_9170020_SNP [dm3] 2L_9170020_SNP [dm6]	G	T	3.626e^-4	0.697	INTRON tai
2R	7181737	2R_7181737_SNP [dm3] 2R_11294232_SNP [dm6]	G	T	3.650e^-4	0.698	DOWNSTREAM CG42336 & 1 other INTRON CG18336	TF binding site mE1_TFBS_cad
3R	25341464	3R_25341464_SNP [dm3] 3R_29515742_SNP [dm6]	G	C	3.652e^-4	0.698	UTR_5_PRIME CG2014 UPSTREAM CG2014	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25341543	3R_25341543_SNP [dm3] 3R_29515821_SNP [dm6]	C	A	3.656e^-4	0.698	UTR_5_PRIME CG2014 INTRON CG2014	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3L	17030050	3L_17030050_SNP [dm3] 3L_17036950_SNP [dm6]	C	T	3.656e^-4	0.698	SYNONYMOUS_CODING scaf6 UTR_3_PRIME scaf6 DOWNSTREAM beg	TF binding site mE1_TFBS_cad
3R	11498096	3R_11498096_SNP [dm3] 3R_15672374_SNP [dm6]	A	G	3.658e^-4	0.698	INTRON pxb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2R	3711487	2R_3711487_SNP [dm3] 2R_7823982_SNP [dm6]	G	T	3.659e^-4	0.698	UTR_3_PRIME CG30383 UPSTREAM cathD	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
3R	4777251	3R_4777251_SNP [dm3] 3R_8951529_SNP [dm6]	A	C	3.661e^-4	0.698	UTR_3_PRIME CG11966
3R	14951893	3R_14951893_SNP [dm3] 3R_19126171_SNP [dm6]	C	A	3.665e^-4	0.698	SYNONYMOUS_CODING CG6040	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4829125	2R_4829125_DEL [dm3] 2R_8941620_DEL [dm6]	ATCGCTGGGCGCAATTGCCG...	A	3.671e^-4	0.698	DOWNSTREAM CG13748 EXON CR44273
3L	12418859	3L_12418859_SNP [dm3] 3L_12425759_SNP [dm6]	G	A	3.671e^-4	0.698	INTRON toe
3R	13138071	3R_13138071_INS [dm3] 3R_17312349_INS [dm6]	A	AA	3.683e^-4	0.699	INTERGENIC
X	3888668	X_3888668_SNP [dm3] X_3994635_SNP [dm6]	C	T	3.684e^-4	0.699	INTERGENIC
3L	17483943	3L_17483943_SNP [dm3] 3L_17490843_SNP [dm6]	G	A	3.689e^-4	0.699	INTRON Oatp74D
3R	12602077	3R_12602077_SNP [dm3] 3R_16776355_SNP [dm6]	G	A	3.693e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8068973	3L_8068973_SNP [dm3] 3L_8075873_SNP [dm6]	G	A	3.695e^-4	0.699	INTRON Ect4
3L	1392353	3L_1392353_SNP [dm3] 3L_1392353_SNP [dm6]	A	G	3.697e^-4	0.699	INTRON Ptp61F	TF binding site mE1_TFBS_cad
2R	10803044	2R_10803044_SNP [dm3] 2R_14915539_SNP [dm6]	G	C	3.702e^-4	0.699	INTRON CG10249
2R	14269164	2R_14269164_SNP [dm3] 2R_18381659_SNP [dm6]	A	G	3.707e^-4	0.699	INTRON CG43202	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21710383	2L_21710383_SNP [dm3] 2L_21710383_SNP [dm6]	G	A	3.719e^-4	0.7	INTRON CG31619	TF binding site BDTNP1_TFBS_prd
X	9109666	X_9109666_SNP [dm3] X_9215633_SNP [dm6]	T	A	3.721e^-4	0.7	UTR_3_PRIME Obp8a UPSTREAM CG15368
3L	1108443	3L_1108443_SNP [dm3] 3L_1108443_SNP [dm6]	C	G	3.724e^-4	0.7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18945971	3R_18945971_SNP [dm3] 3R_23120249_SNP [dm6]	G	T	3.727e^-4	0.7	UPSTREAM CenB1A INTRON CenB1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	7413073	3L_7413073_SNP [dm3] 3L_7419973_SNP [dm6]	A	G	3.734e^-4	0.7	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4531383	2R_4531383_SNP [dm3] 2R_8643878_SNP [dm6]	G	A	3.743e^-4	0.7	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens

By genomic position
Variant impact
Gene name

StarvationRes phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results