DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.755e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.08035

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	7.635	0.022
In_3R_K	4.7749	0.0919

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1805 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	7087064	2L_7087064_SNP [dm3] 2L_7087064_SNP [dm6]	A	G	8.485e^-7	0.805	INTERGENIC
2L	7088396	2L_7088396_SNP [dm3] 2L_7088396_SNP [dm6]	A	T	1.073e^-6	0.805	INTERGENIC
2L	3753356	2L_3753356_SNP [dm3] 2L_3753356_SNP [dm6]	G	A	1.288e^-6	0.805	UTR_3_PRIME CG10019
2R	15692293	2R_15692293_SNP [dm3] 2R_19804788_SNP [dm6]	G	A	2.142e^-6	0.957	INTERGENIC
3R	22688749	3R_22688749_SNP [dm3] 3R_26863027_SNP [dm6]	T	C	3.224e^-6	0.957	UPSTREAM IntS12 & 1 other INTRON Lerp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	7087068	2L_7087068_SNP [dm3] 2L_7087068_SNP [dm6]	G	T	3.339e^-6	0.957	INTERGENIC
2L	7088810	2L_7088810_SNP [dm3] 2L_7088810_SNP [dm6]	C	A	4.673e^-6	0.957	INTERGENIC
2L	17980099	2L_17980099_SNP [dm3] 2L_17980099_SNP [dm6]	A	T	5.843e^-6	0.957	SYNONYMOUS_CODING btv
3L	8365377	3L_8365377_SNP [dm3] 3L_8372277_SNP [dm6]	T	C	6.391e^-6	0.957	UPSTREAM ImpE1 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4371246	2L_4371246_SNP [dm3] 2L_4371246_SNP [dm6]	T	G	7.179e^-6	0.957	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2R	14641706	2R_14641706_SNP [dm3] 2R_18754201_SNP [dm6]	A	T	7.827e^-6	0.957	UTR_3_PRIME Hs3st-A UPSTREAM Cyp12b2
X	18394766	X_18394766_SNP [dm3] X_18500733_SNP [dm6]	G	C	7.833e^-6	0.957	NON_SYNONYMOUS_CODING Rad51D UPSTREAM GalNAc-T2 DOWNSTREAM Wnt5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2L	4371256	2L_4371256_SNP [dm3] 2L_4371256_SNP [dm6]	T	G	8.962e^-6	0.957	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	4417618	2L_4417618_SNP [dm3] 2L_4417618_SNP [dm6]	T	A	9.193e^-6	0.957	INTRON CG15431	TF binding site mE1_TFBS_chinmo
2L	7087010	2L_7087010_SNP [dm3] 2L_7087010_SNP [dm6]	A	C	9.204e^-6	0.957	INTERGENIC
2L	17976994	2L_17976994_SNP [dm3] 2L_17976994_SNP [dm6]	T	G	9.701e^-6	0.957	NON_SYNONYMOUS_CODING btv
2L	17979751	2L_17979751_SNP [dm3] 2L_17979751_SNP [dm6]	C	T	1.048e^-5	0.957	NON_SYNONYMOUS_CODING btv	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17980009	2L_17980009_SNP [dm3] 2L_17980009_SNP [dm6]	G	A	1.068e^-5	0.957	SYNONYMOUS_CODING btv
3L	11236602	3L_11236602_SNP [dm3] 3L_11243502_SNP [dm6]	A	C	1.093e^-5	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4371304	2L_4371304_SNP [dm3] 2L_4371304_SNP [dm6]	C	G	1.118e^-5	0.957	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
X	9224651	X_9224651_INS [dm3] X_9330618_INS [dm6]	C	CATTCCTCAATTAC...	1.125e^-5	0.957	UPSTREAM CG34450 DOWNSTREAM CG34449 INTRON CG34449
2L	13139091	2L_13139091_SNP [dm3] 2L_13139091_SNP [dm6]	C	G	1.167e^-5	0.957	INTERGENIC
2L	7088624	2L_7088624_SNP [dm3] 2L_7088624_SNP [dm6]	T	C	1.319e^-5	0.957	INTERGENIC
3R	22763400	3R_22763400_SNP [dm3] 3R_26937678_SNP [dm6]	C	A	1.617e^-5	0.957	INTRON sda
3R	8901524	3R_8901524_SNP [dm3] 3R_13075802_SNP [dm6]	A	T	1.672e^-5	0.957	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	2738232	2L_2738232_SNP [dm3] 2L_2738232_SNP [dm6]	A	G	1.673e^-5	0.957	SYNONYMOUS_CODING CG31689 DOWNSTREAM mir-4914	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12600320	2L_12600320_SNP [dm3] 2L_12600320_SNP [dm6]	A	T	1.740e^-5	0.957	INTRON nub
3R	23856487	3R_23856487_SNP [dm3] 3R_28030765_SNP [dm6]	C	T	1.750e^-5	0.957	SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	6159600	X_6159600_DEL [dm3] X_6265567_DEL [dm6]	TTAGTT	T	1.915e^-5	0.957	INTRON schlank	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17620555	2R_17620555_SNP [dm3] 2R_21733050_SNP [dm6]	C	T	2.065e^-5	0.957	INTERGENIC
2R	17223207	2R_17223207_SNP [dm3] 2R_21335702_SNP [dm6]	A	T	2.076e^-5	0.957	SYNONYMOUS_CODING dom DOWNSTREAM snoRNA:Me28S-G2596 & 1 other INTRON dom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8901716	3R_8901716_INS [dm3] 3R_13075994_INS [dm6]	T	TT	2.077e^-5	0.957	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23055674	3R_23055674_SNP [dm3] 3R_27229952_SNP [dm6]	T	C	2.085e^-5	0.957	SYNONYMOUS_CODING CG31064 UPSTREAM CG42814 DOWNSTREAM CG31064	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10282833	3L_10282833_SNP [dm3] 3L_10289733_SNP [dm6]	C	G	2.129e^-5	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5814166	2L_5814166_SNP [dm3] 2L_5814166_SNP [dm6]	C	A	2.141e^-5	0.957	INTERGENIC
3R	14071070	3R_14071070_DEL [dm3] 3R_18245348_DEL [dm6]	CGTCCCAATATTTC...	C	2.330e^-5	0.957	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	11379587	2L_11379587_SNP [dm3] 2L_11379587_SNP [dm6]	G	T	2.332e^-5	0.957	INTERGENIC	regulatory region REDfly_CRMs
2L	11380032	2L_11380032_SNP [dm3] 2L_11380032_SNP [dm6]	T	G	2.425e^-5	0.957	INTERGENIC	regulatory region REDfly_CRMs
2L	11379979	2L_11379979_SNP [dm3] 2L_11379979_SNP [dm6]	A	G	2.507e^-5	0.957	INTERGENIC	regulatory region REDfly_CRMs
2L	7126701	2L_7126701_SNP [dm3] 2L_7126701_SNP [dm6]	C	T	2.514e^-5	0.957	INTRON Pvf3
2R	17834431	2R_17834431_SNP [dm3] 2R_21946926_SNP [dm6]	T	C	2.578e^-5	0.957	DOWNSTREAM Fili INTERGENIC
2L	2332302	2L_2332302_SNP [dm3] 2L_2332302_SNP [dm6]	A	G	2.735e^-5	0.957	INTRON CG9967 & 1 other
2L	7888679	2L_7888679_SNP [dm3] 2L_7888679_SNP [dm6]	A	T	2.757e^-5	0.957	SYNONYMOUS_CODING Spn28Da DOWNSTREAM Spn28Db	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	837693	3L_837693_SNP [dm3] 3L_837693_SNP [dm6]	A	C	2.858e^-5	0.957	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	13973622	2L_13973622_SNP [dm3] 2L_13973622_SNP [dm6]	C	T	2.867e^-5	0.957	UTR_3_PRIME NimC1 UPSTREAM He DOWNSTREAM NimC1
3R	8901459	3R_8901459_SNP [dm3] 3R_13075737_SNP [dm6]	A	G	2.896e^-5	0.957	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	11380075	2L_11380075_SNP [dm3] 2L_11380075_SNP [dm6]	G	A	2.918e^-5	0.957	INTERGENIC	regulatory region REDfly_CRMs
2L	4355538	2L_4355538_SNP [dm3] 2L_4355538_SNP [dm6]	A	C	2.926e^-5	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	23055686	3R_23055686_SNP [dm3] 3R_27229964_SNP [dm6]	G	A	2.953e^-5	0.957	SYNONYMOUS_CODING CG31064 UPSTREAM CG42814 DOWNSTREAM CG31064	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5619040	X_5619040_SNP [dm3] X_5725007_SNP [dm6]	A	G	3.164e^-5	0.957	INTRON CG32758
3R	20970805	3R_20970805_SNP [dm3] 3R_25145083_SNP [dm6]	A	G	3.349e^-5	0.957	INTERGENIC
3L	8365383	3L_8365383_SNP [dm3] 3L_8372283_SNP [dm6]	C	T	3.415e^-5	0.957	UPSTREAM ImpE1 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11469356	2L_11469356_SNP [dm3] 2L_11469356_SNP [dm6]	C	T	3.563e^-5	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3630339	2R_3630339_SNP [dm3] 2R_7742834_SNP [dm6]	G	A	3.587e^-5	0.957	UPSTREAM CG30497 & 1 other INTRON CG30497 & 1 other
2L	2738000	2L_2738000_SNP [dm3] 2L_2738000_SNP [dm6]	T	C	3.598e^-5	0.957	DOWNSTREAM mir-4914 INTRON CG31689
2R	15467220	2R_15467220_DEL [dm3] 2R_19579715_DEL [dm6]	AA	A	3.637e^-5	0.957	INTRON sm
2L	2738390	2L_2738390_SNP [dm3] 2L_2738390_SNP [dm6]	G	A	3.732e^-5	0.957	SPLICE_SITE_REGION CG31689 DOWNSTREAM mir-4914 INTRON CG31689	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17109464	3R_17109464_SNP [dm3] 3R_21283742_SNP [dm6]	C	A	3.756e^-5	0.957	INTRON SIFaR & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	27448719	3R_27448719_SNP [dm3] 3R_31622997_SNP [dm6]	C	A	3.763e^-5	0.957	DOWNSTREAM pasha INTRON kek6
2L	16610431	2L_16610431_SNP [dm3] 2L_16610431_SNP [dm6]	A	G	3.783e^-5	0.957	DOWNSTREAM CG4631 INTRON CG42389
2L	11380079	2L_11380079_SNP [dm3] 2L_11380079_SNP [dm6]	T	C	3.797e^-5	0.957	INTERGENIC	regulatory region REDfly_CRMs
2L	16610426	2L_16610426_SNP [dm3] 2L_16610426_SNP [dm6]	C	T	3.822e^-5	0.957	DOWNSTREAM CG4631 INTRON CG42389
3R	24359067	3R_24359067_SNP [dm3] 3R_28533345_SNP [dm6]	C	T	3.879e^-5	0.957	INTRON Ppn	TF binding site BDTNP1_TFBS_twi
3L	16280330	3L_16280330_INS [dm3] 3L_16287230_INS [dm6]	T	TTCT	3.879e^-5	0.957	DOWNSTREAM CG13046 INTERGENIC
2R	9746673	2R_9746673_SNP [dm3] 2R_13859168_SNP [dm6]	T	C	3.906e^-5	0.957	SYNONYMOUS_CODING Uba3 UPSTREAM tum	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	3165750	2L_3165750_SNP [dm3] 2L_3165750_SNP [dm6]	A	G	4.054e^-5	0.957	INTRON Hydr2	TF binding site BDTNP1_TFBS_da
3L	11649612	3L_11649612_SNP [dm3] 3L_11656512_SNP [dm6]	C	T	4.190e^-5	0.957	UPSTREAM mir-274 INTRON CG32085
3L	21258065	3L_21258065_INS [dm3] 3L_21264965_INS [dm6]	A	AA	4.201e^-5	0.957	UTR_3_PRIME Eip78C
3L	10972275	3L_10972275_SNP [dm3] 3L_10979175_SNP [dm6]	G	C	4.255e^-5	0.957	UPSTREAM CR45745 INTERGENIC
2L	7888658	2L_7888658_SNP [dm3] 2L_7888658_SNP [dm6]	C	A	4.265e^-5	0.957	NON_SYNONYMOUS_CODING Spn28Da DOWNSTREAM Spn28Db	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9746793	2R_9746793_SNP [dm3] 2R_13859288_SNP [dm6]	A	C	4.309e^-5	0.957	SYNONYMOUS_CODING Uba3 UPSTREAM tum	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4371850	2L_4371850_SNP [dm3] 2L_4371850_SNP [dm6]	A	C	4.343e^-5	0.957	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	22751284	3R_22751284_SNP [dm3] 3R_26925562_SNP [dm6]	C	A	4.379e^-5	0.957	INTRON sda
3L	6736715	3L_6736715_SNP [dm3] 3L_6743615_SNP [dm6]	A	G	4.399e^-5	0.957	UPSTREAM dikar DOWNSTREAM velo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_ttk
2L	9547584	2L_9547584_SNP [dm3] 2L_9547584_SNP [dm6]	T	C	4.418e^-5	0.957	DOWNSTREAM jp & 1 other INTERGENIC	transposable element FlyBase
2L	1576888	2L_1576888_SNP [dm3] 2L_1576888_SNP [dm6]	T	G	4.788e^-5	0.957	INTRON haf
2L	10526140	2L_10526140_SNP [dm3] 2L_10526140_SNP [dm6]	T	A	4.955e^-5	0.957	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	17980024	2L_17980024_SNP [dm3] 2L_17980024_SNP [dm6]	T	C	4.958e^-5	0.957	SYNONYMOUS_CODING btv
2L	4399961	2L_4399961_SNP [dm3] 2L_4399961_SNP [dm6]	C	T	5.015e^-5	0.957	UTR_3_PRIME l_2_k05819 UPSTREAM CG33003
2L	11074203	2L_11074203_SNP [dm3] 2L_11074203_SNP [dm6]	C	T	5.062e^-5	0.957	DOWNSTREAM CR45725 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	12991953	2L_12991953_SNP [dm3] 2L_12991953_SNP [dm6]	G	T	5.067e^-5	0.957	INTERGENIC
2L	2736573	2L_2736573_SNP [dm3] 2L_2736573_SNP [dm6]	C	G	5.167e^-5	0.957	UPSTREAM mir-4914 INTRON CG31689
2L	5903746	2L_5903746_SNP [dm3] 2L_5903746_SNP [dm6]	G	A	5.226e^-5	0.957	SYNONYMOUS_CODING CG9021	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8352159	3R_8352159_SNP [dm3] 3R_12526437_SNP [dm6]	C	G	5.330e^-5	0.957	NON_SYNONYMOUS_CODING Hug SPLICE_SITE_REGION Hug INTRON Octbeta3R
3L	3916618	3L_3916618_SNP [dm3] 3L_3916618_SNP [dm6]	G	A	5.335e^-5	0.957	INTRON Eip63F-1	TF binding site mE1_TFBS_cad
2L	5814084	2L_5814084_SNP [dm3] 2L_5814084_SNP [dm6]	C	T	5.337e^-5	0.957	INTERGENIC
2L	3165595	2L_3165595_SNP [dm3] 2L_3165595_SNP [dm6]	G	A	5.360e^-5	0.957	INTRON Hydr2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	19732070	2L_19732070_SNP [dm3] 2L_19732070_SNP [dm6]	T	A	5.383e^-5	0.957	DOWNSTREAM CG10462 & 1 other INTERGENIC
2R	4337816	2R_4337816_SNP [dm3] 2R_8450311_SNP [dm6]	G	A	5.411e^-5	0.957	DOWNSTREAM Cyp4e1 INTRON Mal-A1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14387733	2R_14387733_SNP [dm3] 2R_18500228_SNP [dm6]	A	T	5.415e^-5	0.957	INTERGENIC
3R	5095994	3R_5095994_SNP [dm3] 3R_9270272_SNP [dm6]	T	G	5.499e^-5	0.957	DOWNSTREAM Vps16A INTERGENIC
3L	6736512	3L_6736512_SNP [dm3] 3L_6743412_SNP [dm6]	A	C	5.605e^-5	0.957	UPSTREAM dikar INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk
2R	6526070	2R_6526070_SNP [dm3] 2R_10638565_SNP [dm6]	A	G	5.687e^-5	0.957	SPLICE_SITE_REGION CG11883 INTRON CG11883	TF binding site mE1_TFBS_cad
X	3214988	X_3214988_DEL [dm3] X_3320955_DEL [dm6]	ATAT	A	5.696e^-5	0.957	INTRON dnc & 1 other
X	17374961	X_17374961_INS [dm3] X_17480928_INS [dm6]	C	CGTAC	5.786e^-5	0.957	INTRON CG43658
2L	7264572	2L_7264572_SNP [dm3] 2L_7264572_SNP [dm6]	T	C	5.932e^-5	0.957	INTRON Wnt4	TF binding site mE1_TFBS_HSA
2L	11380203	2L_11380203_SNP [dm3] 2L_11380203_SNP [dm6]	A	T	5.949e^-5	0.957	INTERGENIC	regulatory region REDfly_CRMs
3L	17815524	3L_17815524_INS [dm3] 3L_17822424_INS [dm6]	A	ATTTACAGAAA...	5.962e^-5	0.957	UPSTREAM Grd INTRON Ir75c
2L	2736548	2L_2736548_SNP [dm3] 2L_2736548_SNP [dm6]	A	G	5.971e^-5	0.957	INTRON CG31689
3L	8771153	3L_8771153_SNP [dm3] 3L_8778053_SNP [dm6]	C	T	5.977e^-5	0.957	INTRON Fhos
2L	2736549	2L_2736549_SNP [dm3] 2L_2736549_SNP [dm6]	G	T	6.002e^-5	0.957	INTRON CG31689
3L	3796116	3L_3796116_SNP [dm3] 3L_3796116_SNP [dm6]	G	A	6.070e^-5	0.957	INTRON CG32264
2L	2390909	2L_2390909_SNP [dm3] 2L_2390909_SNP [dm6]	A	C	6.087e^-5	0.957	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
3R	15151139	3R_15151139_SNP [dm3] 3R_19325417_SNP [dm6]	T	A	6.107e^-5	0.957	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	3796121	3L_3796121_SNP [dm3] 3L_3796121_SNP [dm6]	G	T	6.145e^-5	0.957	INTRON CG32264
3R	23856601	3R_23856601_SNP [dm3] 3R_28030879_SNP [dm6]	G	A	6.170e^-5	0.957	SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1343241	2R_1343241_SNP [dm3] 2R_5455736_SNP [dm6]	T	C	6.226e^-5	0.957	UTR_3_PRIME laccase2
X	5636501	X_5636501_SNP [dm3] X_5742468_SNP [dm6]	G	A	6.238e^-5	0.957	SYNONYMOUS_CODING IntS6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25529880	3R_25529880_SNP [dm3] 3R_29704158_SNP [dm6]	T	C	6.326e^-5	0.957	INTERGENIC
2L	2390880	2L_2390880_SNP [dm3] 2L_2390880_SNP [dm6]	C	G	6.395e^-5	0.957	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
X	12624503	X_12624503_SNP [dm3] X_12730470_SNP [dm6]	T	C	6.484e^-5	0.957	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl
2L	4418320	2L_4418320_SNP [dm3] 2L_4418320_SNP [dm6]	T	A	6.488e^-5	0.957	DOWNSTREAM tRNA:CR31963 INTRON CG15431
2L	13139173	2L_13139173_SNP [dm3] 2L_13139173_SNP [dm6]	G	T	6.588e^-5	0.957	INTERGENIC
2L	13139177	2L_13139177_SNP [dm3] 2L_13139177_SNP [dm6]	T	A	6.588e^-5	0.957	INTERGENIC
2L	12385788	2L_12385788_SNP [dm3] 2L_12385788_SNP [dm6]	G	A	6.632e^-5	0.957	INTRON bru-2
3R	6246488	3R_6246488_DEL [dm3] 3R_10420766_DEL [dm6]	AA	A	6.686e^-5	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5904799	2L_5904799_INS [dm3] 2L_5904799_INS [dm6]	A	AA	6.707e^-5	0.957	UPSTREAM CG9021 DOWNSTREAM CR43808 INTERGENIC
2L	15456417	2L_15456417_SNP [dm3] 2L_15456417_SNP [dm6]	C	T	6.715e^-5	0.957	INTERGENIC
2L	2390898	2L_2390898_SNP [dm3] 2L_2390898_SNP [dm6]	A	T	6.788e^-5	0.957	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
X	9224573	X_9224573_SNP [dm3] X_9330540_SNP [dm6]	A	C	6.861e^-5	0.957	UPSTREAM CG34450 DOWNSTREAM CG34449 INTRON CG34449
2R	1130506	2R_1130506_SNP [dm3] 2R_5243001_SNP [dm6]	T	C	6.862e^-5	0.957	INTRON Nipped-A	TF binding site mE1_TFBS_HSA
2L	6573085	2L_6573085_SNP [dm3] 2L_6573085_SNP [dm6]	A	G	6.959e^-5	0.957	INTRON CG11319
3R	4611835	3R_4611835_SNP [dm3] 3R_8786113_SNP [dm6]	G	A	6.992e^-5	0.957	INTRON Pif1B & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	21495123	3R_21495123_SNP [dm3] 3R_25669401_SNP [dm6]	A	G	7.015e^-5	0.957	SYNONYMOUS_CODING Lgr3
3R	22706164	3R_22706164_SNP [dm3] 3R_26880442_SNP [dm6]	A	C	7.162e^-5	0.957	UTR_3_PRIME CG5500 INTRON ro	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	2738328	2L_2738328_SNP [dm3] 2L_2738328_SNP [dm6]	C	T	7.220e^-5	0.957	SYNONYMOUS_CODING CG31689 DOWNSTREAM mir-4914	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17979955	2L_17979955_SNP [dm3] 2L_17979955_SNP [dm6]	T	C	7.258e^-5	0.957	SYNONYMOUS_CODING btv
2L	2390867	2L_2390867_SNP [dm3] 2L_2390867_SNP [dm6]	G	A	7.346e^-5	0.957	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
X	3215050	X_3215050_SNP [dm3] X_3321017_SNP [dm6]	A	T	7.383e^-5	0.957	INTRON dnc & 1 other
2L	7138066	2L_7138066_SNP [dm3] 2L_7138066_SNP [dm6]	G	A	7.462e^-5	0.957	INTRON Pvf3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	20571198	3L_20571198_SNP [dm3] 3L_20578098_SNP [dm6]	G	T	7.511e^-5	0.957	INTERGENIC
2L	13139218	2L_13139218_SNP [dm3] 2L_13139218_SNP [dm6]	G	T	7.532e^-5	0.957	INTERGENIC
2L	4375192	2L_4375192_SNP [dm3] 2L_4375192_SNP [dm6]	G	A	7.545e^-5	0.957	INTRON Traf4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	19732103	2L_19732103_SNP [dm3] 2L_19732103_SNP [dm6]	G	A	7.545e^-5	0.957	UTR_3_PRIME CG10462 DOWNSTREAM Lar
3R	9058799	3R_9058799_SNP [dm3] 3R_13233077_SNP [dm6]	G	A	7.597e^-5	0.957	SYNONYMOUS_CODING Ace
2R	17227606	2R_17227606_SNP [dm3] 2R_21340101_SNP [dm6]	G	A	7.619e^-5	0.957	SYNONYMOUS_CODING dom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17815024	3L_17815024_SNP [dm3] 3L_17821924_SNP [dm6]	G	A	7.784e^-5	0.957	SYNONYMOUS_CODING Ir75c
2L	13139202	2L_13139202_SNP [dm3] 2L_13139202_SNP [dm6]	G	A	7.806e^-5	0.957	INTERGENIC
2L	10660153	2L_10660153_DEL [dm3] 2L_10660153_DEL [dm6]	TAAGT	T	7.859e^-5	0.957	INTERGENIC
2R	1751054	2R_1751054_DEL [dm3] 2R_5863549_DEL [dm6]	GACATACAATGG...	G	7.873e^-5	0.957	INTERGENIC
2L	2684915	2L_2684915_SNP [dm3] 2L_2684915_SNP [dm6]	C	G	7.895e^-5	0.957	INTRON CG31690
2L	4371295	2L_4371295_SNP [dm3] 2L_4371295_SNP [dm6]	G	A	7.901e^-5	0.957	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	2685254	2L_2685254_SNP [dm3] 2L_2685254_SNP [dm6]	T	C	7.935e^-5	0.957	INTRON CG31690
2R	9746305	2R_9746305_SNP [dm3] 2R_13858800_SNP [dm6]	A	C	8.000e^-5	0.957	UPSTREAM Uba3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	4337153	2R_4337153_SNP [dm3] 2R_8449648_SNP [dm6]	C	T	8.040e^-5	0.957	UTR_3_PRIME Cyp4e1 DOWNSTREAM Mal-A1
2R	3925805	2R_3925805_SNP [dm3] 2R_8038300_SNP [dm6]	G	A	8.049e^-5	0.957	INTRON Optix	regulatory region REDfly_CRMs
2L	7088012	2L_7088012_SNP [dm3] 2L_7088012_SNP [dm6]	G	C	8.095e^-5	0.957	INTERGENIC
3R	8901115	3R_8901115_SNP [dm3] 3R_13075393_SNP [dm6]	C	T	8.179e^-5	0.957	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	13648088	2R_13648088_SNP [dm3] 2R_17760583_SNP [dm6]	G	C	8.238e^-5	0.957	UPSTREAM CG5009 DOWNSTREAM HLH54F INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	8549161	3R_8549161_SNP [dm3] 3R_12723439_SNP [dm6]	G	T	8.288e^-5	0.957	UPSTREAM Men INTERGENIC
2L	2685316	2L_2685316_SNP [dm3] 2L_2685316_SNP [dm6]	A	C	8.301e^-5	0.957	INTRON CG31690
2L	11341474	2L_11341474_SNP [dm3] 2L_11341474_SNP [dm6]	C	T	8.452e^-5	0.957	DOWNSTREAM CG14926 INTERGENIC
2R	16437440	2R_16437440_SNP [dm3] 2R_20549935_SNP [dm6]	C	A	8.527e^-5	0.957	SYNONYMOUS_CODING Cpr57A START_GAINED Obp57d UTR_5_PRIME Obp57d DOWNSTREAM CG13430 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	12582863	X_12582863_SNP [dm3] X_12688830_SNP [dm6]	C	G	8.538e^-5	0.957	SYNONYMOUS_CODING Smr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12837093	3L_12837093_SNP [dm3] 3L_12843993_SNP [dm6]	A	T	8.628e^-5	0.957	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
3L	12837095	3L_12837095_INS [dm3] 3L_12843995_INS [dm6]	T	TAATGTT	8.628e^-5	0.957	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
3L	10857634	3L_10857634_SNP [dm3] 3L_10864534_SNP [dm6]	C	T	8.658e^-5	0.957	INTRON tna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4402695	2L_4402695_SNP [dm3] 2L_4402695_SNP [dm6]	C	T	8.936e^-5	0.957	SYNONYMOUS_CODING CG33003 UPSTREAM Dim1	TF binding site mE1_TFBS_cad
X	18814227	X_18814227_SNP [dm3] X_18920194_SNP [dm6]	T	C	8.939e^-5	0.957	INTERGENIC
2L	1561479	2L_1561479_SNP [dm3] 2L_1561479_SNP [dm6]	G	A	9.069e^-5	0.957	INTRON haf
2L	4402734	2L_4402734_SNP [dm3] 2L_4402734_SNP [dm6]	C	T	9.106e^-5	0.957	SYNONYMOUS_CODING CG33003 UPSTREAM Dim1	TF binding site mE1_TFBS_cad
2L	4588764	2L_4588764_SNP [dm3] 2L_4588764_SNP [dm6]	C	T	9.122e^-5	0.957	INTRON dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	12385319	2L_12385319_SNP [dm3] 2L_12385319_SNP [dm6]	G	C	9.215e^-5	0.957	INTRON bru-2
3R	8188827	3R_8188827_SNP [dm3] 3R_12363105_SNP [dm6]	C	A	9.234e^-5	0.957	UTR_3_PRIME CG4115 DOWNSTREAM Tim17a1 & 1 other
2L	7088003	2L_7088003_SNP [dm3] 2L_7088003_SNP [dm6]	G	T	9.282e^-5	0.957	INTERGENIC
2L	12385855	2L_12385855_SNP [dm3] 2L_12385855_SNP [dm6]	A	G	9.402e^-5	0.957	INTRON bru-2
2L	7146075	2L_7146075_DEL [dm3] 2L_7146075_DEL [dm6]	TA	T	9.405e^-5	0.957	DOWNSTREAM CR44612 INTRON Pvf3
3R	22765509	3R_22765509_SNP [dm3] 3R_26939787_SNP [dm6]	T	C	9.436e^-5	0.957	INTRON sda
3R	8346633	3R_8346633_SNP [dm3] 3R_12520911_SNP [dm6]	G	A	9.477e^-5	0.957	INTRON Octbeta3R
2L	12385853	2L_12385853_SNP [dm3] 2L_12385853_SNP [dm6]	T	A	9.553e^-5	0.957	INTRON bru-2
3R	23856568	3R_23856568_SNP [dm3] 3R_28030846_SNP [dm6]	T	G	9.563e^-5	0.957	NON_SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6735678	3L_6735678_DEL [dm3] 3L_6742578_DEL [dm6]	TT	T	9.610e^-5	0.957	INTRON dikar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	3796047	3L_3796047_INS [dm3] 3L_3796047_INS [dm6]	T	GGGC	9.727e^-5	0.957	INTRON CG32264
3L	18471311	3L_18471311_DEL [dm3] 3L_18478211_DEL [dm6]	AC	A	9.785e^-5	0.957	UPSTREAM CR44673 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8558451	2L_8558451_SNP [dm3] 2L_8558451_SNP [dm6]	G	A	9.852e^-5	0.957	INTRON Sema-1a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12837142	3L_12837142_DEL [dm3] 3L_12844042_DEL [dm6]	TAAAGCTTGT	T	9.863e^-5	0.957	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
2R	17274105	2R_17274105_SNP [dm3] 2R_21386600_SNP [dm6]	G	T	9.865e^-5	0.957	UTR_5_PRIME Acox57D-p UPSTREAM Acox57D-p & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	15150635	3R_15150635_SNP [dm3] 3R_19324913_SNP [dm6]	T	C	9.869e^-5	0.957	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	16580282	3R_16580282_SNP [dm3] 3R_20754560_SNP [dm6]	G	C	9.886e^-5	0.957	DOWNSTREAM CG42322 INTRON CG42322
2R	19868454	2R_19868454_SNP [dm3] 2R_23980931_SNP [dm6]	T	G	9.887e^-5	0.957	INTRON Sox14	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	3215303	X_3215303_SNP [dm3] X_3321270_SNP [dm6]	T	G	9.975e^-5	0.957	INTRON CR44886 & 1 other
2L	12385903	2L_12385903_SNP [dm3] 2L_12385903_SNP [dm6]	G	A	1.001e^-4	0.957	INTRON bru-2
3L	7423015	3L_7423015_SNP [dm3] 3L_7429915_SNP [dm6]	T	C	1.002e^-4	0.957	INTRON CG42458	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	7270210	2L_7270210_SNP [dm3] 2L_7270210_SNP [dm6]	G	T	1.002e^-4	0.957	INTRON Wnt4
3L	10283014	3L_10283014_SNP [dm3] 3L_10289914_SNP [dm6]	G	A	1.002e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13139191	2L_13139191_SNP [dm3] 2L_13139191_SNP [dm6]	T	C	1.003e^-4	0.957	INTERGENIC
2L	12570579	2L_12570579_SNP [dm3] 2L_12570579_SNP [dm6]	A	G	1.006e^-4	0.957	DOWNSTREAM CR44598 & 1 other INTERGENIC
3R	21180263	3R_21180263_SNP [dm3] 3R_25354541_SNP [dm6]	C	T	1.007e^-4	0.957	INTRON Fur1	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
3R	5097271	3R_5097271_SNP [dm3] 3R_9271549_SNP [dm6]	T	C	1.009e^-4	0.957	INTERGENIC
2L	18639967	2L_18639967_SNP [dm3] 2L_18639967_SNP [dm6]	T	A	1.010e^-4	0.957	INTRON MESR3
2L	12188579	2L_12188579_SNP [dm3] 2L_12188579_SNP [dm6]	T	G	1.016e^-4	0.957	INTRON aret
2L	4414478	2L_4414478_SNP [dm3] 2L_4414478_SNP [dm6]	C	T	1.018e^-4	0.957	INTRON CG15431
2R	17275482	2R_17275482_SNP [dm3] 2R_21387977_SNP [dm6]	T	C	1.027e^-4	0.957	SYNONYMOUS_CODING Acox57D-p	TF binding site mE1_TFBS_sens
2L	6179940	2L_6179940_SNP [dm3] 2L_6179940_SNP [dm6]	C	T	1.032e^-4	0.957	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	12844918	3R_12844918_DEL [dm3] 3R_17019196_DEL [dm6]	GTG	G	1.033e^-4	0.957	UTR_3_PRIME AdSL INTRON Pxd
3L	3006118	3L_3006118_SNP [dm3] 3L_3006118_SNP [dm6]	G	A	1.038e^-4	0.957	INTRON FMRFaR
2L	2390848	2L_2390848_SNP [dm3] 2L_2390848_SNP [dm6]	A	T	1.053e^-4	0.957	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
2R	9524667	2R_9524667_SNP [dm3] 2R_13637162_SNP [dm6]	G	A	1.059e^-4	0.957	INTRON fas
2L	965363	2L_965363_SNP [dm3] 2L_965363_SNP [dm6]	T	A	1.063e^-4	0.957	INTERGENIC
3R	18192318	3R_18192318_SNP [dm3] 3R_22366596_SNP [dm6]	C	G	1.068e^-4	0.957	SYNONYMOUS_CODING CG5380 UPSTREAM CG5382 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2L	12385825	2L_12385825_SNP [dm3] 2L_12385825_SNP [dm6]	T	G	1.073e^-4	0.957	INTRON bru-2
3R	17006842	3R_17006842_SNP [dm3] 3R_21181120_SNP [dm6]	A	T	1.074e^-4	0.957	UTR_5_PRIME SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9751938	3L_9751938_SNP [dm3] 3L_9758838_SNP [dm6]	A	G	1.074e^-4	0.957	INTRON CG42268
3L	7153176	3L_7153176_SNP [dm3] 3L_7160076_SNP [dm6]	T	C	1.082e^-4	0.957	UTR_3_PRIME Dscam2 DOWNSTREAM Dscam2
3L	20571200	3L_20571200_SNP [dm3] 3L_20578100_SNP [dm6]	C	A	1.086e^-4	0.957	INTERGENIC
X	15008482	X_15008482_SNP [dm3] X_15114449_SNP [dm6]	T	G	1.089e^-4	0.957	DOWNSTREAM Rab3-GEF INTRON Cyp4s3
3L	12837138	3L_12837138_SNP [dm3] 3L_12844038_SNP [dm6]	C	A	1.094e^-4	0.957	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
3L	18346616	3L_18346616_SNP [dm3] 3L_18353516_SNP [dm6]	G	C	1.102e^-4	0.957	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	5955592	3L_5955592_SNP [dm3] 3L_5962492_SNP [dm6]	T	G	1.105e^-4	0.957	INTERGENIC
2L	5529251	2L_5529251_SNP [dm3] 2L_5529251_SNP [dm6]	G	A	1.109e^-4	0.957	NON_SYNONYMOUS_CODING CG31915 INTRON Cap-D3	TF binding site mE1_TFBS_sens
2L	13139175	2L_13139175_SNP [dm3] 2L_13139175_SNP [dm6]	T	C	1.109e^-4	0.957	INTERGENIC
2L	2390833	2L_2390833_SNP [dm3] 2L_2390833_SNP [dm6]	C	T	1.110e^-4	0.957	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
2L	2390850	2L_2390850_SNP [dm3] 2L_2390850_SNP [dm6]	C	T	1.110e^-4	0.957	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
2R	3623358	2R_3623358_SNP [dm3] 2R_7735853_SNP [dm6]	G	A	1.110e^-4	0.957	UPSTREAM CG18812 INTERGENIC
2L	4595276	2L_4595276_SNP [dm3] 2L_4595276_SNP [dm6]	C	A	1.113e^-4	0.957	UPSTREAM dp INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17223261	2R_17223261_SNP [dm3] 2R_21335756_SNP [dm6]	G	A	1.114e^-4	0.957	SYNONYMOUS_CODING dom DOWNSTREAM snoRNA:Me28S-G2596 & 1 other INTRON dom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12836994	3L_12836994_SNP [dm3] 3L_12843894_SNP [dm6]	A	T	1.124e^-4	0.957	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
X	11692616	X_11692616_SNP [dm3] X_11798583_SNP [dm6]	T	C	1.126e^-4	0.957	UTR_3_PRIME CkIIbeta DOWNSTREAM CkIIbeta INTRON CkIIbeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3R	15150791	3R_15150791_SNP [dm3] 3R_19325069_SNP [dm6]	C	A	1.140e^-4	0.957	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	6255377	2L_6255377_SNP [dm3] 2L_6255377_SNP [dm6]	T	C	1.148e^-4	0.957	UPSTREAM CG9486 INTRON Ddr
2L	11465117	2L_11465117_SNP [dm3] 2L_11465117_SNP [dm6]	G	C	1.149e^-4	0.957	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	7086558	2L_7086558_SNP [dm3] 2L_7086558_SNP [dm6]	T	C	1.151e^-4	0.957	INTERGENIC
3L	8140589	3L_8140589_SNP [dm3] 3L_8147489_SNP [dm6]	G	A	1.157e^-4	0.957	INTRON CG13676
3R	23326749	3R_23326749_DEL [dm3] 3R_27501027_DEL [dm6]	ACCAA	A	1.164e^-4	0.957	DOWNSTREAM CG43139 INTERGENIC
3L	17815027	3L_17815027_SNP [dm3] 3L_17821927_SNP [dm6]	A	G	1.165e^-4	0.957	SYNONYMOUS_CODING Ir75c
2L	12570559	2L_12570559_SNP [dm3] 2L_12570559_SNP [dm6]	T	C	1.165e^-4	0.957	DOWNSTREAM CR44598 & 1 other INTERGENIC
2R	4337185	2R_4337185_SNP [dm3] 2R_8449680_SNP [dm6]	A	G	1.169e^-4	0.957	UTR_3_PRIME Cyp4e1 & 1 other
X	5009284	X_5009284_SNP [dm3] X_5115251_SNP [dm6]	A	G	1.172e^-4	0.957	INTRON rg & 1 other
2L	12384827	2L_12384827_SNP [dm3] 2L_12384827_SNP [dm6]	C	G	1.177e^-4	0.957	INTRON bru-2
2L	2685246	2L_2685246_SNP [dm3] 2L_2685246_SNP [dm6]	A	C	1.181e^-4	0.957	INTRON CG31690
3R	9744012	3R_9744012_SNP [dm3] 3R_13918290_SNP [dm6]	T	C	1.195e^-4	0.957	INTERGENIC
2R	2440068	2R_2440068_SNP [dm3] 2R_6552563_SNP [dm6]	C	T	1.200e^-4	0.957	INTRON jing
2L	16406812	2L_16406812_SNP [dm3] 2L_16406812_SNP [dm6]	T	C	1.200e^-4	0.957	UPSTREAM CG5888 INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5064467	2L_5064467_SNP [dm3] 2L_5064467_SNP [dm6]	G	T	1.202e^-4	0.957	UTR_5_PRIME qtc INTRON qtc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	10694537	2L_10694537_SNP [dm3] 2L_10694537_SNP [dm6]	C	G	1.210e^-4	0.957	UPSTREAM CR44181 & 1 other DOWNSTREAM CG7300 INTERGENIC
2R	13648047	2R_13648047_INS [dm3] 2R_17760542_INS [dm6]	T	TT	1.227e^-4	0.957	UPSTREAM CG5009 DOWNSTREAM HLH54F INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	2272037	2L_2272037_SNP [dm3] 2L_2272037_SNP [dm6]	G	C	1.235e^-4	0.957	EXON CR43753
2L	6106431	2L_6106431_SNP [dm3] 2L_6106431_SNP [dm6]	T	A	1.237e^-4	0.957	INTRON stai
2L	11380194	2L_11380194_INS [dm3] 2L_11380194_INS [dm6]	T	TGCATT	1.241e^-4	0.957	INTERGENIC	regulatory region REDfly_CRMs
3L	10612352	3L_10612352_SNP [dm3] 3L_10619252_SNP [dm6]	T	C	1.248e^-4	0.957	INTERGENIC
X	3215026	X_3215026_SNP [dm3] X_3320993_SNP [dm6]	G	A	1.250e^-4	0.957	INTRON dnc & 1 other
2R	1134703	2R_1134703_SNP [dm3] 2R_5247198_SNP [dm6]	C	T	1.264e^-4	0.957	INTRON Nipped-A	transposable element FlyBase
3R	23856535	3R_23856535_SNP [dm3] 3R_28030813_SNP [dm6]	G	A	1.265e^-4	0.957	SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17219150	2R_17219150_SNP [dm3] 2R_21331645_SNP [dm6]	G	A	1.267e^-4	0.957	DOWNSTREAM snoRNA:Psi18S-841c & 2 others INTRON dom EXON snoRNA:Me28S-A2589c
3L	3796258	3L_3796258_SNP [dm3] 3L_3796258_SNP [dm6]	T	C	1.267e^-4	0.957	INTRON CG32264
2L	4713571	2L_4713571_SNP [dm3] 2L_4713571_SNP [dm6]	T	C	1.268e^-4	0.957	INTRON CG34351	TF binding site mE1_TFBS_inv
2R	19887853	2R_19887853_SNP [dm3] 2R_24000330_SNP [dm6]	G	C	1.269e^-4	0.957	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19887870	2R_19887870_SNP [dm3] 2R_24000347_SNP [dm6]	G	A	1.269e^-4	0.957	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	1733786	2R_1733786_SNP [dm3] 2R_5846281_SNP [dm6]	C	A	1.270e^-4	0.957	INTRON dpr12
2L	19732106	2L_19732106_SNP [dm3] 2L_19732106_SNP [dm6]	G	A	1.282e^-4	0.962	UTR_3_PRIME CG10462 DOWNSTREAM Lar
3L	10283033	3L_10283033_INS [dm3] 3L_10289933_INS [dm6]	T	TCATTTT	1.291e^-4	0.962	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6106420	2L_6106420_SNP [dm3] 2L_6106420_SNP [dm6]	A	T	1.298e^-4	0.962	INTRON stai
2L	11380152	2L_11380152_SNP [dm3] 2L_11380152_SNP [dm6]	A	G	1.299e^-4	0.962	INTERGENIC	regulatory region REDfly_CRMs
2R	3623356	2R_3623356_SNP [dm3] 2R_7735851_SNP [dm6]	C	T	1.307e^-4	0.962	UPSTREAM CG18812 INTERGENIC
2L	8624504	2L_8624504_SNP [dm3] 2L_8624504_SNP [dm6]	T	C	1.315e^-4	0.962	INTRON Sema-1a	TF binding site BDTNP1_TFBS_twi
3L	18481795	3L_18481795_SNP [dm3] 3L_18488695_SNP [dm6]	T	C	1.332e^-4	0.962	NON_SYNONYMOUS_CODING AstC-R2	TF binding site mE1_TFBS_cad
3L	6736271	3L_6736271_SNP [dm3] 3L_6743171_SNP [dm6]	G	T	1.333e^-4	0.962	UPSTREAM dikar INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
2L	12385892	2L_12385892_SNP [dm3] 2L_12385892_SNP [dm6]	T	C	1.333e^-4	0.962	INTRON bru-2
2L	7088362	2L_7088362_INS [dm3] 2L_7088362_INS [dm6]	A	AATTCA	1.336e^-4	0.962	INTERGENIC
2L	3523992	2L_3523992_SNP [dm3] 2L_3523992_SNP [dm6]	C	A	1.337e^-4	0.962	UTR_5_PRIME Sr-CIV
2L	17980513	2L_17980513_SNP [dm3] 2L_17980513_SNP [dm6]	A	G	1.339e^-4	0.962	SYNONYMOUS_CODING btv
3R	20839679	3R_20839679_SNP [dm3] 3R_25013957_SNP [dm6]	G	C	1.359e^-4	0.962	NON_SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25109466	3R_25109466_SNP [dm3] 3R_29283744_SNP [dm6]	C	G	1.365e^-4	0.962	INTERGENIC	regulatory region REDfly_CRMs
3R	8901454	3R_8901454_SNP [dm3] 3R_13075732_SNP [dm6]	A	T	1.368e^-4	0.962	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	11380230	2L_11380230_SNP [dm3] 2L_11380230_SNP [dm6]	C	A	1.371e^-4	0.962	INTERGENIC	regulatory region REDfly_CRMs
2R	16118708	2R_16118708_SNP [dm3] 2R_20231203_SNP [dm6]	C	G	1.376e^-4	0.962	UPSTREAM CG11044 INTERGENIC
3R	15151138	3R_15151138_SNP [dm3] 3R_19325416_SNP [dm6]	A	G	1.382e^-4	0.962	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	6981267	2L_6981267_SNP [dm3] 2L_6981267_SNP [dm6]	A	T	1.382e^-4	0.962	SYNONYMOUS_CODING uif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	20025225	X_20025225_SNP [dm3] X_20131192_SNP [dm6]	A	G	1.385e^-4	0.962	UTR_5_PRIME CG42582
2L	3929013	2L_3929013_SNP [dm3] 2L_3929013_SNP [dm6]	G	A	1.390e^-4	0.962	INTRON fred
3L	23835700	3L_23835700_SNP [dm3] 3L_23842600_SNP [dm6]	G	C	1.390e^-4	0.962	INTRON CG40470
3L	11363581	3L_11363581_SNP [dm3] 3L_11370481_SNP [dm6]	A	G	1.402e^-4	0.967	INTERGENIC
2L	11380055	2L_11380055_SNP [dm3] 2L_11380055_SNP [dm6]	T	C	1.408e^-4	0.967	INTERGENIC	regulatory region REDfly_CRMs
3R	22684478	3R_22684478_SNP [dm3] 3R_26858756_SNP [dm6]	A	T	1.424e^-4	0.97	INTRON Lerp	TF binding site mE1_TFBS_chinmo
3R	21953740	3R_21953740_SNP [dm3] 3R_26128018_SNP [dm6]	G	T	1.425e^-4	0.97	UPSTREAM CG31324 DOWNSTREAM CG14556 INTRON CG31324
X	12665787	X_12665787_SNP [dm3] X_12771754_SNP [dm6]	T	C	1.433e^-4	0.97	UTR_3_PRIME CG3812 DOWNSTREAM CG32647 & 1 other
X	9224695	X_9224695_SNP [dm3] X_9330662_SNP [dm6]	A	G	1.445e^-4	0.97	UPSTREAM CG34450 DOWNSTREAM CG34449 INTRON CG34449
3L	10283023	3L_10283023_SNP [dm3] 3L_10289923_SNP [dm6]	A	T	1.446e^-4	0.97	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2960566	3L_2960566_SNP [dm3] 3L_2960566_SNP [dm6]	A	T	1.448e^-4	0.97	UPSTREAM Or63a DOWNSTREAM Shab INTRON CG34025
X	9224569	X_9224569_INS [dm3] X_9330536_INS [dm6]	C	CTTTGTGTGTAGGAC...	1.457e^-4	0.97	UPSTREAM CG34450 DOWNSTREAM CG34449 INTRON CG34449
3R	16467739	3R_16467739_SNP [dm3] 3R_20642017_SNP [dm6]	C	A	1.462e^-4	0.97	SYNONYMOUS_CODING Lrrk
3L	19178467	3L_19178467_SNP [dm3] 3L_19185367_SNP [dm6]	A	G	1.471e^-4	0.97	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	15693765	3L_15693765_SNP [dm3] 3L_15700665_SNP [dm6]	A	G	1.476e^-4	0.97	UPSTREAM comm2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	10283028	3L_10283028_SNP [dm3] 3L_10289928_SNP [dm6]	T	G	1.477e^-4	0.97	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2390906	2L_2390906_SNP [dm3] 2L_2390906_SNP [dm6]	T	G	1.488e^-4	0.97	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
2L	2327081	2L_2327081_SNP [dm3] 2L_2327081_SNP [dm6]	G	C	1.489e^-4	0.97	INTRON CG9967 & 1 other	TF binding site mE1_TFBS_chinmo
3R	24114432	3R_24114432_SNP [dm3] 3R_28288710_SNP [dm6]	C	A	1.508e^-4	0.97	INTERGENIC
2R	2402940	2R_2402940_SNP [dm3] 2R_6515435_SNP [dm6]	A	G	1.515e^-4	0.97	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22556637	3R_22556637_SNP [dm3] 3R_26730915_SNP [dm6]	G	C	1.526e^-4	0.97	DOWNSTREAM CG14246 INTERGENIC
2L	12385320	2L_12385320_SNP [dm3] 2L_12385320_SNP [dm6]	A	G	1.530e^-4	0.97	INTRON bru-2
X	5340396	X_5340396_SNP [dm3] X_5446363_SNP [dm6]	A	G	1.532e^-4	0.97	UPSTREAM SPR INTERGENIC
3L	3533304	3L_3533304_SNP [dm3] 3L_3533304_SNP [dm6]	C	T	1.540e^-4	0.97	INTRON Eip63E
3L	23237512	3L_23237512_SNP [dm3] 3L_23244412_SNP [dm6]	G	A	1.541e^-4	0.97	INTRON nAChRalpha4
2R	1596534	2R_1596534_SNP [dm3] 2R_5709029_SNP [dm6]	T	G	1.541e^-4	0.97	SYNONYMOUS_CODING ap	TF binding site mE1_TFBS_cad
3L	11363562	3L_11363562_SNP [dm3] 3L_11370462_SNP [dm6]	T	A	1.543e^-4	0.97	INTERGENIC
3L	7302555	3L_7302555_SNP [dm3] 3L_7309455_SNP [dm6]	A	G	1.565e^-4	0.97	INTRON unc-13-4A
3L	8060108	3L_8060108_SNP [dm3] 3L_8067008_SNP [dm6]	T	A	1.571e^-4	0.97	UPSTREAM tRNA:CR32362 INTRON Ect4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	5955541	3L_5955541_SNP [dm3] 3L_5962441_SNP [dm6]	T	C	1.572e^-4	0.97	INTERGENIC
3L	4101331	3L_4101331_SNP [dm3] 3L_4101331_SNP [dm6]	T	A	1.577e^-4	0.97	UPSTREAM CG14995 INTRON CG14995
2L	2390810	2L_2390810_SNP [dm3] 2L_2390810_SNP [dm6]	G	A	1.596e^-4	0.97	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
X	20221129	X_20221129_SNP [dm3] X_20350102_SNP [dm6]	C	A	1.608e^-4	0.97	INTERGENIC
3R	7095561	3R_7095561_SNP [dm3] 3R_11269839_SNP [dm6]	A	T	1.618e^-4	0.97	EXON CR31386	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6735399	3L_6735399_SNP [dm3] 3L_6742299_SNP [dm6]	G	T	1.620e^-4	0.97	INTRON dikar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	2523826	2R_2523826_SNP [dm3] 2R_6636321_SNP [dm6]	T	A	1.626e^-4	0.97	UPSTREAM Bap170 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	11371106	2L_11371106_SNP [dm3] 2L_11371106_SNP [dm6]	C	T	1.629e^-4	0.97	INTRON salr
2L	19732109	2L_19732109_SNP [dm3] 2L_19732109_SNP [dm6]	A	C	1.632e^-4	0.97	UTR_3_PRIME CG10462 DOWNSTREAM Lar
2L	9640777	2L_9640777_SNP [dm3] 2L_9640777_SNP [dm6]	A	C	1.637e^-4	0.97	INTRON Apoltp
3R	3002420	3R_3002420_SNP [dm3] 3R_7176698_SNP [dm6]	C	T	1.643e^-4	0.97	INTRON sas
3L	23898703	3L_23898703_SNP [dm3] 3L_23905603_SNP [dm6]	G	A	1.660e^-4	0.97	INTRON CG40470
2R	1747805	2R_1747805_SNP [dm3] 2R_5860300_SNP [dm6]	C	T	1.660e^-4	0.97	UTR_3_PRIME dpr12 DOWNSTREAM dpr12
3L	2882606	3L_2882606_SNP [dm3] 3L_2882606_SNP [dm6]	T	A	1.668e^-4	0.97	UPSTREAM CR44531 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	17872184	2L_17872184_SNP [dm3] 2L_17872184_SNP [dm6]	C	G	1.669e^-4	0.97	INTRON CadN2
3L	7487992	3L_7487992_SNP [dm3] 3L_7494892_SNP [dm6]	T	G	1.670e^-4	0.97	SYNONYMOUS_CODING Cyp4d8	TF binding site mE1_TFBS_cad
2L	2863532	2L_2863532_SNP [dm3] 2L_2863532_SNP [dm6]	A	T	1.673e^-4	0.97	INTRON CG2991	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	4409397	2L_4409397_SNP [dm3] 2L_4409397_SNP [dm6]	T	C	1.677e^-4	0.97	INTRON CG15431	TF binding site mE1_TFBS_chinmo
3L	10281713	3L_10281713_SNP [dm3] 3L_10288613_SNP [dm6]	T	A	1.678e^-4	0.97	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2646310	3L_2646310_SNP [dm3] 3L_2646310_SNP [dm6]	T	C	1.679e^-4	0.97	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17109339	3R_17109339_SNP [dm3] 3R_21283617_SNP [dm6]	G	T	1.679e^-4	0.97	NON_SYNONYMOUS_CODING CG17298 INTRON SIFaR	TF binding site mE1_TFBS_cad
3R	8550443	3R_8550443_SNP [dm3] 3R_12724721_SNP [dm6]	A	G	1.683e^-4	0.97	INTERGENIC
3L	15265709	3L_15265709_INS [dm3] 3L_15272609_INS [dm6]	C	CC	1.683e^-4	0.97	INTERGENIC
X	12624475	X_12624475_SNP [dm3] X_12730442_SNP [dm6]	C	T	1.696e^-4	0.97	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl
X	21882694	X_21882694_SNP [dm3] X_22480858_SNP [dm6]	T	C	1.697e^-4	0.97	UTR_5_PRIME CG12576	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	9656058	2R_9656058_SNP [dm3] 2R_13768553_SNP [dm6]	T	G	1.698e^-4	0.97	INTERGENIC
2L	4513330	2L_4513330_SNP [dm3] 2L_4513330_SNP [dm6]	T	A	1.709e^-4	0.97	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	20920127	X_20920127_SNP [dm3] X_21049100_SNP [dm6]	G	A	1.713e^-4	0.97	DOWNSTREAM CG1518 & 1 other INTERGENIC
2L	7085305	2L_7085305_SNP [dm3] 2L_7085305_SNP [dm6]	G	T	1.748e^-4	0.97	UPSTREAM Pvf2 INTERGENIC	TF binding site mE1_TFBS_Trl
X	12624476	X_12624476_SNP [dm3] X_12730443_SNP [dm6]	C	T	1.757e^-4	0.97	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl
X	12084767	X_12084767_SNP [dm3] X_12190734_SNP [dm6]	C	T	1.782e^-4	0.97	INTRON Ten-a
2R	18393571	2R_18393571_SNP [dm3] 2R_22506066_SNP [dm6]	G	A	1.792e^-4	0.97	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	7093401	3R_7093401_SNP [dm3] 3R_11267679_SNP [dm6]	T	C	1.798e^-4	0.97	INTERGENIC
2R	2522211	2R_2522211_SNP [dm3] 2R_6634706_SNP [dm6]	C	A	1.802e^-4	0.97	SYNONYMOUS_CODING Trap1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	1133439	2R_1133439_DEL [dm3] 2R_5245934_DEL [dm6]	TG	T	1.803e^-4	0.97	INTRON Nipped-A	transposable element FlyBase
2R	2520190	2R_2520190_SNP [dm3] 2R_6632685_SNP [dm6]	C	A	1.813e^-4	0.97	UPSTREAM Vha16-1 DOWNSTREAM Trap1 INTRON Vha16-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_zfh1
3L	4971511	3L_4971511_SNP [dm3] 3L_4971511_SNP [dm6]	T	G	1.814e^-4	0.97	INTRON Con
2L	7888673	2L_7888673_SNP [dm3] 2L_7888673_SNP [dm6]	C	T	1.818e^-4	0.97	SYNONYMOUS_CODING Spn28Da DOWNSTREAM Spn28Db	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18008851	2L_18008851_SNP [dm3] 2L_18008851_SNP [dm6]	T	A	1.826e^-4	0.97	UTR_3_PRIME CG42634 & 1 other UPSTREAM CG31740 DOWNSTREAM elfless
3R	23856556	3R_23856556_SNP [dm3] 3R_28030834_SNP [dm6]	G	A	1.836e^-4	0.97	SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2738800	2L_2738800_SNP [dm3] 2L_2738800_SNP [dm6]	G	T	1.836e^-4	0.97	INTRON CG31689
X	10628293	X_10628293_SNP [dm3] X_10734260_SNP [dm6]	G	C	1.847e^-4	0.97	INTRON CG32676
2R	14572706	2R_14572706_SNP [dm3] 2R_18685201_SNP [dm6]	C	T	1.848e^-4	0.97	SYNONYMOUS_CODING CG44433	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3673700	2L_3673700_SNP [dm3] 2L_3673700_SNP [dm6]	G	A	1.861e^-4	0.97	INTRON CG34340
2L	2735511	2L_2735511_SNP [dm3] 2L_2735511_SNP [dm6]	A	C	1.865e^-4	0.97	UPSTREAM CG31689 INTRON CG31689
3R	8133613	3R_8133613_SNP [dm3] 3R_12307891_SNP [dm6]	T	G	1.867e^-4	0.97	INTERGENIC
2L	6255167	2L_6255167_SNP [dm3] 2L_6255167_SNP [dm6]	C	A	1.868e^-4	0.97	UPSTREAM CG9486 INTRON Ddr
3R	22769096	3R_22769096_SNP [dm3] 3R_26943374_SNP [dm6]	G	T	1.877e^-4	0.97	INTRON sda	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20389524	3R_20389524_DEL [dm3] 3R_24563802_DEL [dm6]	ACAAAA	A	1.878e^-4	0.97	INTRON CG13624
2R	16435552	2R_16435552_SNP [dm3] 2R_20548047_SNP [dm6]	T	A	1.880e^-4	0.97	SYNONYMOUS_CODING Obp57e UPSTREAM CG30148 DOWNSTREAM Cpr57A & 1 other
3L	10642204	3L_10642204_SNP [dm3] 3L_10649104_SNP [dm6]	G	C	1.881e^-4	0.97	INTRON CG32066
2R	13682124	2R_13682124_SNP [dm3] 2R_17794619_SNP [dm6]	G	A	1.881e^-4	0.97	INTRON Dhit	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2882607	3L_2882607_SNP [dm3] 3L_2882607_SNP [dm6]	G	T	1.883e^-4	0.97	UPSTREAM CR44531 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	2629932	2R_2629932_SNP [dm3] 2R_6742427_SNP [dm6]	C	T	1.888e^-4	0.97	INTRON phtf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	6404452	X_6404452_SNP [dm3] X_6510419_SNP [dm6]	A	C	1.889e^-4	0.97	INTRON CG42340	TF binding site mE1_TFBS_inv
3R	15339679	3R_15339679_SNP [dm3] 3R_19513957_SNP [dm6]	A	T	1.891e^-4	0.97	INTRON Dys
2R	8370724	2R_8370724_SNP [dm3] 2R_12483219_SNP [dm6]	A	T	1.892e^-4	0.97	INTRON Dh44-R2
2L	18008700	2L_18008700_SNP [dm3] 2L_18008700_SNP [dm6]	T	C	1.896e^-4	0.97	SYNONYMOUS_CODING CG42635 UTR_3_PRIME CG42634 UPSTREAM CG31740 DOWNSTREAM CG42659 & 1 other
2L	5435464	2L_5435464_SNP [dm3] 2L_5435464_SNP [dm6]	T	A	1.896e^-4	0.97	DOWNSTREAM CR31647 INTERGENIC
2L	11074215	2L_11074215_SNP [dm3] 2L_11074215_SNP [dm6]	A	G	1.900e^-4	0.97	DOWNSTREAM CR45725 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	13139281	2L_13139281_SNP [dm3] 2L_13139281_SNP [dm6]	G	A	1.906e^-4	0.97	INTERGENIC
3R	7095110	3R_7095110_SNP [dm3] 3R_11269388_SNP [dm6]	T	C	1.906e^-4	0.97	DOWNSTREAM CR31386 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	14132254	X_14132254_SNP [dm3] X_14238221_SNP [dm6]	T	A	1.907e^-4	0.97	UTR_5_PRIME CG1434 UPSTREAM CG1434 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	4588031	2L_4588031_SNP [dm3] 2L_4588031_SNP [dm6]	A	G	1.911e^-4	0.97	INTRON dp
3R	5099295	3R_5099295_SNP [dm3] 3R_9273573_SNP [dm6]	C	A	1.914e^-4	0.97	INTERGENIC
2L	11380311	2L_11380311_SNP [dm3] 2L_11380311_SNP [dm6]	T	G	1.916e^-4	0.97	INTERGENIC	regulatory region REDfly_CRMs
2R	14579652	2R_14579652_SNP [dm3] 2R_18692147_SNP [dm6]	C	T	1.917e^-4	0.97	UTR_5_PRIME Sik3 INTRON Sik3
3L	5955549	3L_5955549_SNP [dm3] 3L_5962449_SNP [dm6]	T	A	1.917e^-4	0.97	INTERGENIC
3L	1003906	3L_1003906_SNP [dm3] 3L_1003906_SNP [dm6]	G	A	1.918e^-4	0.97	INTRON trio	TF binding site mE1_TFBS_chinmo
X	17280738	X_17280738_SNP [dm3] X_17386705_SNP [dm6]	A	G	1.923e^-4	0.97	INTERGENIC
2R	19902265	2R_19902265_SNP [dm3] 2R_24014742_SNP [dm6]	T	G	1.926e^-4	0.97	UPSTREAM Unc-89 DOWNSTREAM CG4324 INTERGENIC
2L	9640698	2L_9640698_SNP [dm3] 2L_9640698_SNP [dm6]	A	T	1.926e^-4	0.97	INTRON Apoltp
2L	6935823	2L_6935823_SNP [dm3] 2L_6935823_SNP [dm6]	C	T	1.927e^-4	0.97	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4708442	2L_4708442_SNP [dm3] 2L_4708442_SNP [dm6]	G	C	1.938e^-4	0.97	INTRON CG34351
2L	11449080	2L_11449080_SNP [dm3] 2L_11449080_SNP [dm6]	C	T	1.945e^-4	0.97	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
X	21458405	X_21458405_DEL [dm3] X_21587378_DEL [dm6]	ATGTA	A	1.947e^-4	0.97	INTERGENIC
X	18394812	X_18394812_SNP [dm3] X_18500779_SNP [dm6]	T	C	1.952e^-4	0.97	SYNONYMOUS_CODING Rad51D UPSTREAM GalNAc-T2 DOWNSTREAM Wnt5	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	12836907	3L_12836907_SNP [dm3] 3L_12843807_SNP [dm6]	T	C	1.960e^-4	0.97	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
3R	10291931	3R_10291931_SNP [dm3] 3R_14466209_SNP [dm6]	C	A	1.967e^-4	0.97	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20221103	X_20221103_SNP [dm3] X_20350076_SNP [dm6]	T	A	1.971e^-4	0.97	INTERGENIC
X	20223437	X_20223437_SNP [dm3] X_20352410_SNP [dm6]	T	G	1.984e^-4	0.97	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2685312	2L_2685312_SNP [dm3] 2L_2685312_SNP [dm6]	A	T	1.995e^-4	0.97	INTRON CG31690
2R	19876610	2R_19876610_SNP [dm3] 2R_23989087_SNP [dm6]	G	T	1.996e^-4	0.97	SYNONYMOUS_CODING Pask UPSTREAM Phm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	19248984	X_19248984_SNP [dm3] X_19354951_SNP [dm6]	C	A	2.004e^-4	0.97	INTRON kek5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4409086	2L_4409086_SNP [dm3] 2L_4409086_SNP [dm6]	A	G	2.005e^-4	0.97	NON_SYNONYMOUS_CODING CG15431	TF binding site mE1_TFBS_chinmo
2R	15693549	2R_15693549_SNP [dm3] 2R_19806044_SNP [dm6]	A	T	2.011e^-4	0.97	INTERGENIC
3R	25186388	3R_25186388_SNP [dm3] 3R_29360666_SNP [dm6]	A	T	2.020e^-4	0.97	INTERGENIC
2R	16456495	2R_16456495_SNP [dm3] 2R_20568990_SNP [dm6]	C	T	2.020e^-4	0.97	INTRON qsm
3L	5988690	3L_5988690_DEL [dm3] 3L_5995590_DEL [dm6]	GCGAGTGGGAGGACTTAAAC...	G	2.022e^-4	0.97	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	4209851	2L_4209851_SNP [dm3] 2L_4209851_SNP [dm6]	G	A	2.036e^-4	0.97	INTRON ft	TF binding site mE1_TFBS_inv
2R	9458858	2R_9458858_SNP [dm3] 2R_13571353_SNP [dm6]	T	C	2.036e^-4	0.97	UTR_3_PRIME CG42807 DOWNSTREAM CG42807	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_Stat92E
X	21891872	X_21891872_SNP [dm3] X_22490036_SNP [dm6]	T	G	2.036e^-4	0.97	INTRON l_1_G0196 & 1 other
2L	7085317	2L_7085317_SNP [dm3] 2L_7085317_SNP [dm6]	C	T	2.040e^-4	0.97	UPSTREAM Pvf2 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	12640103	2L_12640103_SNP [dm3] 2L_12640103_SNP [dm6]	T	A	2.042e^-4	0.97	INTRON Ref2
X	11952680	X_11952680_SNP [dm3] X_12058647_SNP [dm6]	G	C	2.046e^-4	0.97	INTRON CR43960 & 1 other
2R	15469443	2R_15469443_SNP [dm3] 2R_19581938_SNP [dm6]	T	A	2.068e^-4	0.97	INTRON sm
2L	5780103	2L_5780103_SNP [dm3] 2L_5780103_SNP [dm6]	C	G	2.074e^-4	0.97	INTRON CG9171	TF binding site BDTNP1_TFBS_twi
2R	1731367	2R_1731367_SNP [dm3] 2R_5843862_SNP [dm6]	C	A	2.075e^-4	0.97	INTRON dpr12
2R	4337237	2R_4337237_SNP [dm3] 2R_8449732_SNP [dm6]	T	A	2.075e^-4	0.97	UTR_3_PRIME Cyp4e1 & 1 other
2L	2806862	2L_2806862_SNP [dm3] 2L_2806862_SNP [dm6]	C	T	2.089e^-4	0.97	INTRON daw
2L	7888662	2L_7888662_SNP [dm3] 2L_7888662_SNP [dm6]	A	G	2.090e^-4	0.97	NON_SYNONYMOUS_CODING Spn28Da DOWNSTREAM Spn28Db	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3796338	3L_3796338_DEL [dm3] 3L_3796338_DEL [dm6]	TTT	C	2.102e^-4	0.97	INTRON CG32264
2R	4336982	2R_4336982_SNP [dm3] 2R_8449477_SNP [dm6]	T	A	2.104e^-4	0.97	SYNONYMOUS_CODING Cyp4e1 DOWNSTREAM Mal-A1
X	14132312	X_14132312_SNP [dm3] X_14238279_SNP [dm6]	C	A	2.107e^-4	0.97	UTR_5_PRIME CG1434 UPSTREAM CG1434 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	14572739	2R_14572739_SNP [dm3] 2R_18685234_SNP [dm6]	T	A	2.109e^-4	0.97	SYNONYMOUS_CODING CG44433	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18361593	3L_18361593_SNP [dm3] 3L_18368493_SNP [dm6]	T	A	2.111e^-4	0.97	INTERGENIC
2L	13917197	2L_13917197_SNP [dm3] 2L_13917197_SNP [dm6]	G	A	2.111e^-4	0.97	SYNONYMOUS_CODING Ance-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3796242	3L_3796242_SNP [dm3] 3L_3796242_SNP [dm6]	G	A	2.113e^-4	0.97	INTRON CG32264
X	13395562	X_13395562_SNP [dm3] X_13501529_SNP [dm6]	G	C	2.115e^-4	0.97	INTRON Neto
X	3215014	X_3215014_SNP [dm3] X_3320981_SNP [dm6]	T	G	2.116e^-4	0.97	INTRON dnc & 1 other
3R	16034172	3R_16034172_SNP [dm3] 3R_20208450_SNP [dm6]	G	A	2.118e^-4	0.97	SYNONYMOUS_CODING CG17199 INTRON Nlg4	TF binding site BDTNP1_TFBS_sna
3R	21180314	3R_21180314_SNP [dm3] 3R_25354592_SNP [dm6]	A	G	2.119e^-4	0.97	INTRON Fur1	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2L	12570683	2L_12570683_SNP [dm3] 2L_12570683_SNP [dm6]	T	G	2.122e^-4	0.97	DOWNSTREAM CR44597 EXON CR44598
2L	7146077	2L_7146077_DEL [dm3] 2L_7146077_DEL [dm6]	GGAAT	G	2.133e^-4	0.97	DOWNSTREAM CR44612 INTRON Pvf3
X	20444644	X_20444644_SNP [dm3] X_20573617_SNP [dm6]	T	A	2.135e^-4	0.97	UPSTREAM CG42580 INTERGENIC
3R	16580300	3R_16580300_SNP [dm3] 3R_20754578_SNP [dm6]	C	T	2.136e^-4	0.97	DOWNSTREAM CG42322 INTRON CG42322
3L	23237901	3L_23237901_SNP [dm3] 3L_23244801_SNP [dm6]	A	G	2.150e^-4	0.97	INTRON nAChRalpha4
2L	11380135	2L_11380135_INS [dm3] 2L_11380135_INS [dm6]	T	AAGC	2.150e^-4	0.97	INTERGENIC	regulatory region REDfly_CRMs
2R	14598534	2R_14598534_SNP [dm3] 2R_18711029_SNP [dm6]	A	G	2.156e^-4	0.97	UPSTREAM pncr016:2R & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14148599	2R_14148599_SNP [dm3] 2R_18261094_SNP [dm6]	A	G	2.156e^-4	0.97	INTERGENIC
2R	1407715	2R_1407715_SNP [dm3] 2R_5520210_SNP [dm6]	C	T	2.164e^-4	0.971	INTRON CG30438	transposable element FlyBase
3L	322853	3L_322853_SNP [dm3] 3L_322853_SNP [dm6]	C	A	2.169e^-4	0.971	INTRON CG32344	TF binding site mE1_TFBS_HSA
2L	10704211	2L_10704211_SNP [dm3] 2L_10704211_SNP [dm6]	T	A	2.177e^-4	0.972	SYNONYMOUS_CODING CG6415 INTRON Lip2	TF binding site mE1_TFBS_chinmo
2L	7452226	2L_7452226_SNP [dm3] 2L_7452226_SNP [dm6]	C	T	2.188e^-4	0.975	UPSTREAM santa-maria DOWNSTREAM Gr28a INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
X	3214980	X_3214980_SNP [dm3] X_3320947_SNP [dm6]	A	T	2.195e^-4	0.976	INTRON dnc & 1 other
2R	11765293	2R_11765293_SNP [dm3] 2R_15877788_SNP [dm6]	G	A	2.200e^-4	0.976	INTRON sli
3L	12326203	3L_12326203_SNP [dm3] 3L_12333103_SNP [dm6]	A	G	2.207e^-4	0.976	INTRON CG32105	TF binding site mE1_TFBS_HSA
3R	21425267	3R_21425267_SNP [dm3] 3R_25599545_SNP [dm6]	C	A	2.219e^-4	0.977	SYNONYMOUS_CODING msi INTRON ymp	TF binding site mE1_TFBS_cad
2L	15329648	2L_15329648_SNP [dm3] 2L_15329648_SNP [dm6]	C	T	2.220e^-4	0.977	INTERGENIC
X	5340406	X_5340406_SNP [dm3] X_5446373_SNP [dm6]	A	G	2.228e^-4	0.979	UPSTREAM SPR INTERGENIC
2R	1908307	2R_1908307_SNP [dm3] 2R_6020802_SNP [dm6]	A	G	2.243e^-4	0.983	UTR_3_PRIME dream DOWNSTREAM dream & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	15686183	2R_15686183_SNP [dm3] 2R_19798678_SNP [dm6]	T	C	2.248e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22684457	3R_22684457_SNP [dm3] 3R_26858735_SNP [dm6]	A	T	2.258e^-4	0.984	INTRON Lerp	TF binding site mE1_TFBS_chinmo
2L	16610313	2L_16610313_SNP [dm3] 2L_16610313_SNP [dm6]	T	G	2.262e^-4	0.984	DOWNSTREAM CG4631 INTRON CG42389
2R	15773422	2R_15773422_DEL [dm3] 2R_19885917_DEL [dm6]	AGCGGCAACAACAA...	A	2.269e^-4	0.985	INTERGENIC
2R	1041811	2R_1041811_SNP [dm3] 2R_5154306_SNP [dm6]	C	T	2.284e^-4	0.985	UTR_3_PRIME Atf6 DOWNSTREAM Atf6	transposable element FlyBase
2R	15469505	2R_15469505_SNP [dm3] 2R_19582000_SNP [dm6]	C	T	2.295e^-4	0.985	INTRON sm
X	15394349	X_15394349_SNP [dm3] X_15500316_SNP [dm6]	T	C	2.300e^-4	0.985	INTRON Gmap
3L	12837074	3L_12837074_INS [dm3] 3L_12843974_INS [dm6]	T	AATGTA	2.304e^-4	0.985	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
2R	15284441	2R_15284441_SNP [dm3] 2R_19396936_SNP [dm6]	G	A	2.308e^-4	0.985	UPSTREAM SdhA & 1 other DOWNSTREAM hts INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	23055791	3R_23055791_SNP [dm3] 3R_27230069_SNP [dm6]	G	A	2.310e^-4	0.985	SYNONYMOUS_CODING CG31064 UPSTREAM CG42814 DOWNSTREAM CG31064	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5096119	3R_5096119_SNP [dm3] 3R_9270397_SNP [dm6]	T	C	2.316e^-4	0.985	DOWNSTREAM Vps16A INTERGENIC
2L	20882999	2L_20882999_SNP [dm3] 2L_20882999_SNP [dm6]	A	T	2.318e^-4	0.985	INTRON sky & 1 other
2R	8382522	2R_8382522_SNP [dm3] 2R_12495017_SNP [dm6]	C	A	2.321e^-4	0.985	UPSTREAM s-cup INTRON fdl	TF binding site mE1_TFBS_cad
3L	329786	3L_329786_SNP [dm3] 3L_329786_SNP [dm6]	G	A	2.326e^-4	0.985	DOWNSTREAM mthl9 INTRON Ptpmeg	TF binding site BDTNP1_TFBS_dl
2L	2739055	2L_2739055_SNP [dm3] 2L_2739055_SNP [dm6]	G	A	2.331e^-4	0.985	UPSTREAM Hrs INTRON CG31689
2R	8705432	2R_8705432_SNP [dm3] 2R_12817927_SNP [dm6]	G	A	2.336e^-4	0.985	INTERGENIC
3L	17815597	3L_17815597_SNP [dm3] 3L_17822497_SNP [dm6]	T	A	2.338e^-4	0.985	UPSTREAM Grd INTRON Ir75c
X	5340409	X_5340409_DEL [dm3] X_5446376_DEL [dm6]	ACAAG	A	2.343e^-4	0.985	UPSTREAM SPR INTERGENIC
2L	19516378	2L_19516378_SNP [dm3] 2L_19516378_SNP [dm6]	A	T	2.349e^-4	0.986	INTRON CG10186	TF binding site mE1_TFBS_chinmo
2L	9545430	2L_9545430_SNP [dm3] 2L_9545430_SNP [dm6]	T	G	2.364e^-4	0.986	UPSTREAM CG13114 DOWNSTREAM CG13113 INTERGENIC
3R	15151041	3R_15151041_SNP [dm3] 3R_19325319_SNP [dm6]	T	C	2.368e^-4	0.986	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	12579985	X_12579985_SNP [dm3] X_12685952_SNP [dm6]	G	A	2.371e^-4	0.986	UTR_3_PRIME Smr DOWNSTREAM Smr
2L	4403220	2L_4403220_SNP [dm3] 2L_4403220_SNP [dm6]	T	A	2.379e^-4	0.986	UPSTREAM Dim1 DOWNSTREAM CG15431 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
X	5581305	X_5581305_SNP [dm3] X_5687272_SNP [dm6]	G	A	2.381e^-4	0.986	SYNONYMOUS_CODING CG3160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	8625221	2L_8625221_SNP [dm3] 2L_8625221_SNP [dm6]	A	T	2.382e^-4	0.986	INTRON Sema-1a	TF binding site BDTNP1_TFBS_twi
3L	23881093	3L_23881093_SNP [dm3] 3L_23887993_SNP [dm6]	G	C	2.389e^-4	0.987	INTRON CG40470
2L	20881515	2L_20881515_SNP [dm3] 2L_20881515_SNP [dm6]	G	A	2.397e^-4	0.987	INTRON sky & 1 other
3R	8901111	3R_8901111_SNP [dm3] 3R_13075389_SNP [dm6]	C	A	2.398e^-4	0.987	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	3283035	2L_3283035_SNP [dm3] 2L_3283035_SNP [dm6]	G	A	2.409e^-4	0.989	INTERGENIC
3R	24787842	3R_24787842_SNP [dm3] 3R_28962120_SNP [dm6]	T	A	2.424e^-4	0.991	INTRON CG14521
3L	2896552	3L_2896552_SNP [dm3] 3L_2896552_SNP [dm6]	A	G	2.425e^-4	0.991	UPSTREAM Shab INTRON Shab	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	9060793	3R_9060793_SNP [dm3] 3R_13235071_SNP [dm6]	G	C	2.436e^-4	0.993	INTRON Ace
X	13502131	X_13502131_DEL [dm3] X_13608098_DEL [dm6]	TT	G	2.445e^-4	0.994	INTRON CG11178	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6735735	3L_6735735_SNP [dm3] 3L_6742635_SNP [dm6]	G	T	2.450e^-4	0.994	INTRON dikar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	6381146	3L_6381146_SNP [dm3] 3L_6388046_SNP [dm6]	T	A	2.458e^-4	0.996	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15471770	2R_15471770_SNP [dm3] 2R_19584265_SNP [dm6]	G	C	2.465e^-4	0.996	INTRON sm
2R	2542931	2R_2542931_SNP [dm3] 2R_6655426_SNP [dm6]	A	T	2.473e^-4	0.997	DOWNSTREAM geminin & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	2985542	3R_2985542_SNP [dm3] 3R_7159820_SNP [dm6]	G	A	2.495e^-4	1	INTERGENIC
3L	468608	3L_468608_SNP [dm3] 3L_468608_SNP [dm6]	G	C	2.529e^-4	1	INTRON klar
2R	2519731	2R_2519731_SNP [dm3] 2R_6632226_SNP [dm6]	A	G	2.540e^-4	1	UTR_5_PRIME Vha16-1 INTRON Vha16-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_zfh1
3L	12837043	3L_12837043_SNP [dm3] 3L_12843943_SNP [dm6]	C	G	2.542e^-4	1	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
2L	2329039	2L_2329039_SNP [dm3] 2L_2329039_SNP [dm6]	T	A	2.543e^-4	1	INTRON CG9967 & 1 other
2L	4707969	2L_4707969_SNP [dm3] 2L_4707969_SNP [dm6]	G	T	2.556e^-4	1	INTRON CG34351
3L	19425673	3L_19425673_SNP [dm3] 3L_19432573_SNP [dm6]	A	T	2.569e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	12844916	3R_12844916_SNP [dm3] 3R_17019194_SNP [dm6]	C	G	2.581e^-4	1	UTR_3_PRIME AdSL INTRON Pxd
3R	24115005	3R_24115005_SNP [dm3] 3R_28289283_SNP [dm6]	C	T	2.581e^-4	1	INTERGENIC
3R	25732368	3R_25732368_SNP [dm3] 3R_29906646_SNP [dm6]	C	A	2.581e^-4	1	DOWNSTREAM CG15515 INTERGENIC
2L	5863063	2L_5863063_SNP [dm3] 2L_5863063_SNP [dm6]	A	C	2.601e^-4	1	INTRON rau
3L	12521883	3L_12521883_SNP [dm3] 3L_12528783_SNP [dm6]	G	A	2.604e^-4	1	SYNONYMOUS_CODING nst	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3L	8047861	3L_8047861_SNP [dm3] 3L_8054761_SNP [dm6]	G	A	2.609e^-4	1	SYNONYMOUS_CODING bip1 DOWNSTREAM nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19407793	2R_19407793_SNP [dm3] 2R_23520270_SNP [dm6]	C	T	2.609e^-4	1	UTR_3_PRIME RabX1
3R	8549347	3R_8549347_SNP [dm3] 3R_12723625_SNP [dm6]	G	C	2.611e^-4	1	INTERGENIC
X	13966833	X_13966833_SNP [dm3] X_14072800_SNP [dm6]	T	C	2.613e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2R	15380915	2R_15380915_SNP [dm3] 2R_19493410_SNP [dm6]	G	A	2.614e^-4	1	SYNONYMOUS_CODING Rep DOWNSTREAM hpo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1213049	2L_1213049_SNP [dm3] 2L_1213049_SNP [dm6]	C	A	2.615e^-4	1	INTERGENIC
3R	21388977	3R_21388977_SNP [dm3] 3R_25563255_SNP [dm6]	C	T	2.617e^-4	1	INTRON msi
2R	12331701	2R_12331701_SNP [dm3] 2R_16444196_SNP [dm6]	G	A	2.624e^-4	1	INTRON CG4409
3L	2485891	3L_2485891_SNP [dm3] 3L_2485891_SNP [dm6]	C	T	2.625e^-4	1	INTRON CG45186	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2L	2332667	2L_2332667_SNP [dm3] 2L_2332667_SNP [dm6]	C	T	2.634e^-4	1	INTRON CG9967 & 1 other
3R	14924513	3R_14924513_SNP [dm3] 3R_19098791_SNP [dm6]	T	C	2.645e^-4	1	INTRON CG6040
2L	10602626	2L_10602626_SNP [dm3] 2L_10602626_SNP [dm6]	C	T	2.648e^-4	1	INTRON Trim9
3L	10345760	3L_10345760_SNP [dm3] 3L_10352660_SNP [dm6]	C	A	2.658e^-4	1	INTRON CR44327
2R	17107284	2R_17107284_SNP [dm3] 2R_21219779_SNP [dm6]	G	A	2.662e^-4	1	SYNONYMOUS_CODING ASPP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	4615980	3R_4615980_SNP [dm3] 3R_8790258_SNP [dm6]	A	C	2.670e^-4	1	INTRON Pif1B & 1 other
X	20025224	X_20025224_SNP [dm3] X_20131191_SNP [dm6]	C	T	2.673e^-4	1	UTR_5_PRIME CG42582
2R	17338567	2R_17338567_SNP [dm3] 2R_21451062_SNP [dm6]	T	C	2.681e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20810164	3L_20810164_SNP [dm3] 3L_20817064_SNP [dm6]	G	C	2.682e^-4	1	UTR_3_PRIME Mst77F UPSTREAM CG3618 INTRON Pka-R1	TF binding site mE1_TFBS_sens
2R	13648030	2R_13648030_SNP [dm3] 2R_17760525_SNP [dm6]	G	A	2.690e^-4	1	UPSTREAM CG5009 DOWNSTREAM HLH54F INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	7200285	2L_7200285_SNP [dm3] 2L_7200285_SNP [dm6]	A	C	2.702e^-4	1	INTRON CG4502	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5019214	2R_5019214_SNP [dm3] 2R_9131709_SNP [dm6]	C	A	2.714e^-4	1	UTR_5_PRIME CG18659 UPSTREAM Hydr1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	5955905	2L_5955905_SNP [dm3] 2L_5955905_SNP [dm6]	G	A	2.726e^-4	1	SYNONYMOUS_CODING CG13999 DOWNSTREAM CG9044 & 1 other
2R	15383714	2R_15383714_SNP [dm3] 2R_19496209_SNP [dm6]	G	A	2.734e^-4	1	SYNONYMOUS_CODING hpo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18639885	2L_18639885_SNP [dm3] 2L_18639885_SNP [dm6]	G	C	2.735e^-4	1	INTRON MESR3
2L	7142049	2L_7142049_SNP [dm3] 2L_7142049_SNP [dm6]	A	G	2.737e^-4	1	UPSTREAM CR44612 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4382244	2L_4382244_SNP [dm3] 2L_4382244_SNP [dm6]	T	C	2.746e^-4	1	SYNONYMOUS_CODING CG17612 DOWNSTREAM CG3338	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	12837097	3L_12837097_SNP [dm3] 3L_12843997_SNP [dm6]	C	G	2.752e^-4	1	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
2L	5425504	2L_5425504_SNP [dm3] 2L_5425504_SNP [dm6]	A	G	2.758e^-4	1	INTERGENIC
3L	17458476	3L_17458476_SNP [dm3] 3L_17465376_SNP [dm6]	C	T	2.762e^-4	1	UPSTREAM CG7603 INTERGENIC
X	13955851	X_13955851_INS [dm3] X_14061818_INS [dm6]	G	GGCTG	2.762e^-4	1	UPSTREAM Ste:CG33236 INTERGENIC
3R	12624829	3R_12624829_SNP [dm3] 3R_16799107_SNP [dm6]	A	T	2.765e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_zfh1
3R	12734663	3R_12734663_SNP [dm3] 3R_16908941_SNP [dm6]	C	G	2.770e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_dl
3R	25236926	3R_25236926_SNP [dm3] 3R_29411204_SNP [dm6]	T	C	2.771e^-4	1	INTRON Ptp99A
2R	1154157	2R_1154157_SNP [dm3] 2R_5266652_SNP [dm6]	G	T	2.771e^-4	1	INTRON d4	TF binding site mE1_TFBS_sens
X	13608231	X_13608231_SNP [dm3] X_13714198_SNP [dm6]	T	C	2.790e^-4	1	UTR_3_PRIME NnaD INTRON CG9940 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	9156382	2L_9156382_SNP [dm3] 2L_9156382_SNP [dm6]	G	T	2.792e^-4	1	INTRON CG32982
2L	18012454	2L_18012454_SNP [dm3] 2L_18012454_SNP [dm6]	T	G	2.809e^-4	1	UTR_5_PRIME rdo UPSTREAM elfless
2R	13664390	2R_13664390_SNP [dm3] 2R_17776885_SNP [dm6]	A	G	2.822e^-4	1	SYNONYMOUS_CODING fab1 UTR_3_PRIME CG33981	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7209688	2L_7209688_SNP [dm3] 2L_7209688_SNP [dm6]	T	C	2.823e^-4	1	INTRON CG13784
X	16430791	X_16430791_SNP [dm3] X_16536758_SNP [dm6]	T	C	2.848e^-4	1	INTERGENIC
3R	14254455	3R_14254455_SNP [dm3] 3R_18428733_SNP [dm6]	T	C	2.856e^-4	1	UTR_3_PRIME fru INTRON fru
3R	3047308	3R_3047308_SNP [dm3] 3R_7221586_SNP [dm6]	C	G	2.863e^-4	1	INTERGENIC
2L	11052294	2L_11052294_SNP [dm3] 2L_11052294_SNP [dm6]	A	G	2.866e^-4	1	INTRON Samuel
2L	10703978	2L_10703978_SNP [dm3] 2L_10703978_SNP [dm6]	G	A	2.867e^-4	1	SYNONYMOUS_CODING CG6415 INTRON Lip2
3L	17814497	3L_17814497_SNP [dm3] 3L_17821397_SNP [dm6]	A	G	2.876e^-4	1	SYNONYMOUS_CODING Ir75c
3L	23257294	3L_23257294_SNP [dm3] 3L_23264194_SNP [dm6]	T	A	2.880e^-4	1	INTRON nAChRalpha4	TF binding site BDTNP1_TFBS_dl
2R	4336993	2R_4336993_SNP [dm3] 2R_8449488_SNP [dm6]	A	C	2.883e^-4	1	NON_SYNONYMOUS_CODING Cyp4e1 DOWNSTREAM Mal-A1
3R	20672365	3R_20672365_SNP [dm3] 3R_24846643_SNP [dm6]	A	G	2.884e^-4	1	UPSTREAM Esp INTRON Esp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11380092	2L_11380092_SNP [dm3] 2L_11380092_SNP [dm6]	G	A	2.889e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3L	17814246	3L_17814246_SNP [dm3] 3L_17821146_SNP [dm6]	G	A	2.890e^-4	1	UPSTREAM Ir75b INTRON Ir75c
3R	15517509	3R_15517509_SNP [dm3] 3R_19691787_SNP [dm6]	A	G	2.891e^-4	1	INTRON Naam
2R	15383711	2R_15383711_SNP [dm3] 2R_19496206_SNP [dm6]	T	A	2.908e^-4	1	SYNONYMOUS_CODING hpo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	10500200	X_10500200_SNP [dm3] X_10606167_SNP [dm6]	T	C	2.923e^-4	1	INTRON CG43347
3R	25736830	3R_25736830_SNP [dm3] 3R_29911108_SNP [dm6]	A	T	2.930e^-4	1	NON_SYNONYMOUS_CODING CG31036	TF binding site mE1_TFBS_cad
2L	3753416	2L_3753416_SNP [dm3] 2L_3753416_SNP [dm6]	T	A	2.931e^-4	1	UTR_3_PRIME CG10019 DOWNSTREAM CG10019
2L	8660462	2L_8660462_SNP [dm3] 2L_8660462_SNP [dm6]	C	T	2.935e^-4	1	SYNONYMOUS_CODING Sema-1a
X	11740253	X_11740253_SNP [dm3] X_11846220_SNP [dm6]	C	T	2.937e^-4	1	UPSTREAM CG15740 INTERGENIC	TF binding site BDTNP1_TFBS_sna
2L	16610347	2L_16610347_SNP [dm3] 2L_16610347_SNP [dm6]	C	T	2.937e^-4	1	DOWNSTREAM CG4631 INTRON CG42389
2L	2739312	2L_2739312_DEL [dm3] 2L_2739312_DEL [dm6]	AAGCA	G	2.939e^-4	1	UPSTREAM Hrs INTRON CG31689
X	20220978	X_20220978_INS [dm3] X_20349951_INS [dm6]	A	AGCAGAA	2.943e^-4	1	INTERGENIC
3R	23856711	3R_23856711_SNP [dm3] 3R_28030989_SNP [dm6]	G	C	2.946e^-4	1	NON_SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11236601	3L_11236601_SNP [dm3] 3L_11243501_SNP [dm6]	G	A	2.951e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	9166841	3R_9166841_SNP [dm3] 3R_13341119_SNP [dm6]	G	A	2.955e^-4	1	INTRON PK2-R1
3R	9166842	3R_9166842_SNP [dm3] 3R_13341120_SNP [dm6]	G	T	2.955e^-4	1	INTRON PK2-R1
2L	17004153	2L_17004153_SNP [dm3] 2L_17004153_SNP [dm6]	G	A	2.960e^-4	1	INTERGENIC
2R	10837276	2R_10837276_SNP [dm3] 2R_14949771_SNP [dm6]	A	T	2.962e^-4	1	UPSTREAM aPKC INTRON aPKC	TF binding site mE1_TFBS_Trl
3L	21160725	3L_21160725_SNP [dm3] 3L_21167625_SNP [dm6]	C	A	2.962e^-4	1	INTRON Ac78C
2L	2685239	2L_2685239_SNP [dm3] 2L_2685239_SNP [dm6]	A	C	2.965e^-4	1	INTRON CG31690
2R	13726534	2R_13726534_DEL [dm3] 2R_17839029_DEL [dm6]	TT	T	2.974e^-4	1	INTRON grh	TF binding site BDTNP1_TFBS_da
2R	10231971	2R_10231971_SNP [dm3] 2R_14344466_SNP [dm6]	A	G	2.984e^-4	1	INTRON Shroom
3L	3928379	3L_3928379_DEL [dm3] 3L_3928379_DEL [dm6]	AA	A	2.993e^-4	1	INTRON Eip63F-1
2R	16361612	2R_16361612_SNP [dm3] 2R_20474107_SNP [dm6]	A	G	2.996e^-4	1	INTRON CG12484
X	20026185	X_20026185_SNP [dm3] X_20132152_SNP [dm6]	A	T	3.000e^-4	1	UPSTREAM CG42582 INTERGENIC
3R	16035732	3R_16035732_SNP [dm3] 3R_20210010_SNP [dm6]	A	C	3.002e^-4	1	UPSTREAM CG17199 INTRON Nlg4
3R	5092982	3R_5092982_SNP [dm3] 3R_9267260_SNP [dm6]	G	A	3.009e^-4	1	NON_SYNONYMOUS_CODING Vps16A UPSTREAM Aats-trp	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
3L	4777565	3L_4777565_SNP [dm3] 3L_4777565_SNP [dm6]	A	T	3.012e^-4	1	INTRON RhoGEF64C
2R	17957698	2R_17957698_SNP [dm3] 2R_22070193_SNP [dm6]	A	G	3.016e^-4	1	SYNONYMOUS_CODING CG11475 DOWNSTREAM Snp	TF binding site mE1_TFBS_sens
2L	11448174	2L_11448174_DEL [dm3] 2L_11448174_DEL [dm6]	AG	A	3.017e^-4	1	INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	16405241	3R_16405241_INS [dm3] 3R_20579519_INS [dm6]	G	GG	3.019e^-4	1	UTR_5_PRIME EloB UPSTREAM Srp14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2703029	2L_2703029_DEL [dm3] 2L_2703029_DEL [dm6]	CGGCCATTCATCCGACCCAT...	C	3.019e^-4	1	INTRON CG31690
2R	17332128	2R_17332128_SNP [dm3] 2R_21444623_SNP [dm6]	G	A	3.030e^-4	1	INTRON Sdc
3R	23055773	3R_23055773_SNP [dm3] 3R_27230051_SNP [dm6]	C	T	3.035e^-4	1	SYNONYMOUS_CODING CG31064 UPSTREAM CG42814 DOWNSTREAM CG31064	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7126984	2L_7126984_SNP [dm3] 2L_7126984_SNP [dm6]	T	G	3.040e^-4	1	INTRON Pvf3
2R	15467140	2R_15467140_SNP [dm3] 2R_19579635_SNP [dm6]	G	A	3.048e^-4	1	INTRON sm
2R	17033281	2R_17033281_SNP [dm3] 2R_21145776_SNP [dm6]	G	A	3.058e^-4	1	UPSTREAM Hmg-2 DOWNSTREAM Xbp1 INTERGENIC
3R	22763424	3R_22763424_SNP [dm3] 3R_26937702_SNP [dm6]	G	A	3.060e^-4	1	INTRON sda
3L	12630966	3L_12630966_SNP [dm3] 3L_12637866_SNP [dm6]	C	T	3.060e^-4	1	INTRON CR32111
2R	7281419	2R_7281419_SNP [dm3] 2R_11393914_SNP [dm6]	G	T	3.060e^-4	1	UPSTREAM tRNA:CR30257 INTRON sprt
2L	8558261	2L_8558261_DEL [dm3] 2L_8558261_DEL [dm6]	ACAT	A	3.063e^-4	1	INTRON Sema-1a	TF binding site mE1_TFBS_cad
2L	9346035	2L_9346035_SNP [dm3] 2L_9346035_SNP [dm6]	C	T	3.069e^-4	1	INTERGENIC
2R	16532916	2R_16532916_SNP [dm3] 2R_20645411_SNP [dm6]	A	G	3.080e^-4	1	UPSTREAM Lrt INTRON DMAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1868218	2L_1868218_SNP [dm3] 2L_1868218_SNP [dm6]	C	G	3.083e^-4	1	INTRON CG31663
2L	2806798	2L_2806798_SNP [dm3] 2L_2806798_SNP [dm6]	C	G	3.085e^-4	1	INTRON daw
2R	3072957	2R_3072957_SNP [dm3] 2R_7185452_SNP [dm6]	C	T	3.086e^-4	1	DOWNSTREAM CG30384 INTRON pk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12386649	2L_12386649_SNP [dm3] 2L_12386649_SNP [dm6]	T	A	3.096e^-4	1	INTRON bru-2
2L	6585965	2L_6585965_SNP [dm3] 2L_6585965_SNP [dm6]	A	G	3.110e^-4	1	INTRON CG11319
2L	7264601	2L_7264601_SNP [dm3] 2L_7264601_SNP [dm6]	T	A	3.111e^-4	1	INTRON Wnt4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6374062	3L_6374062_SNP [dm3] 3L_6380962_SNP [dm6]	C	A	3.112e^-4	1	INTERGENIC
3R	4307553	3R_4307553_SNP [dm3] 3R_8481831_SNP [dm6]	C	A	3.115e^-4	1	INTERGENIC
3L	3058843	3L_3058843_DEL [dm3] 3L_3058843_DEL [dm6]	AA	A	3.120e^-4	1	INTRON CG32486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	18785795	2L_18785795_SNP [dm3] 2L_18785795_SNP [dm6]	C	T	3.135e^-4	1	INTRON ham
3L	7877042	3L_7877042_SNP [dm3] 3L_7883942_SNP [dm6]	A	G	3.136e^-4	1	INTRON CG32365
2L	7005452	2L_7005452_SNP [dm3] 2L_7005452_SNP [dm6]	G	A	3.163e^-4	1	INTRON uif
X	6841390	X_6841390_SNP [dm3] X_6947357_SNP [dm6]	T	C	3.166e^-4	1	INTRON CG14431
2L	5904495	2L_5904495_DEL [dm3] 2L_5904495_DEL [dm6]	AGTGGAAAGATAACGAAAAA...	A	3.166e^-4	1	DOWNSTREAM CR43808 INTRON CG9021
3L	8356867	3L_8356867_SNP [dm3] 3L_8363767_SNP [dm6]	G	T	3.180e^-4	1	INTERGENIC
2R	3928124	2R_3928124_SNP [dm3] 2R_8040619_SNP [dm6]	C	T	3.180e^-4	1	UPSTREAM Optix INTRON Optix	TF binding site mE1_TFBS_chinmo
X	15008480	X_15008480_SNP [dm3] X_15114447_SNP [dm6]	A	T	3.206e^-4	1	DOWNSTREAM Rab3-GEF INTRON Cyp4s3
3R	14341309	3R_14341309_SNP [dm3] 3R_18515587_SNP [dm6]	T	C	3.215e^-4	1	INTRON fru	TF binding site BDTNP1_TFBS_twi
2R	10968250	2R_10968250_DEL [dm3] 2R_15080745_DEL [dm6]	AG	A	3.218e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2R	19886399	2R_19886399_SNP [dm3] 2R_23998876_SNP [dm6]	G	A	3.231e^-4	1	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_chinmo
2R	3976487	2R_3976487_SNP [dm3] 2R_8088982_SNP [dm6]	G	A	3.236e^-4	1	NON_SYNONYMOUS_CODING sut2 UPSTREAM sut3	TF binding site mE1_TFBS_inv
2L	16790285	2L_16790285_SNP [dm3] 2L_16790285_SNP [dm6]	C	T	3.240e^-4	1	SYNONYMOUS_CODING Cyt-b5-r
3R	24115138	3R_24115138_SNP [dm3] 3R_28289416_SNP [dm6]	G	C	3.244e^-4	1	INTERGENIC
2L	12345521	2L_12345521_SNP [dm3] 2L_12345521_SNP [dm6]	C	T	3.251e^-4	1	INTRON bru-2	TF binding site BDTNP1_TFBS_twi
2R	15469581	2R_15469581_SNP [dm3] 2R_19582076_SNP [dm6]	A	C	3.254e^-4	1	INTRON sm
2R	15950342	2R_15950342_SNP [dm3] 2R_20062837_SNP [dm6]	G	A	3.268e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	9751930	3L_9751930_SNP [dm3] 3L_9758830_SNP [dm6]	A	C	3.269e^-4	1	INTRON CG42268
2L	12239741	2L_12239741_DEL [dm3] 2L_12239741_DEL [dm6]	CGGCAC	C	3.275e^-4	1	INTRON aret
2L	11511552	2L_11511552_INS [dm3] 2L_11511552_INS [dm6]	A	ACAAA	3.275e^-4	1	INTRON CG6509	TF binding site mE1_TFBS_cad
2L	3479500	2L_3479500_SNP [dm3] 2L_3479500_SNP [dm6]	G	T	3.280e^-4	1	UTR_3_PRIME Thor	TF binding site BDTNP1_TFBS_dl
2L	11380086	2L_11380086_SNP [dm3] 2L_11380086_SNP [dm6]	T	A	3.281e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3L	15349128	3L_15349128_SNP [dm3] 3L_15356028_SNP [dm6]	G	T	3.282e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3L	6737119	3L_6737119_SNP [dm3] 3L_6744019_SNP [dm6]	A	C	3.292e^-4	1	UPSTREAM dikar DOWNSTREAM velo INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_ttk
2L	2332332	2L_2332332_SNP [dm3] 2L_2332332_SNP [dm6]	C	T	3.293e^-4	1	INTRON CG9967 & 1 other
2L	10602426	2L_10602426_SNP [dm3] 2L_10602426_SNP [dm6]	A	G	3.299e^-4	1	INTRON Trim9
X	16140338	X_16140338_SNP [dm3] X_16246305_SNP [dm6]	T	C	3.302e^-4	1	INTERGENIC
2R	15779211	2R_15779211_SNP [dm3] 2R_19891706_SNP [dm6]	G	A	3.304e^-4	1	INTERGENIC
3L	3796240	3L_3796240_SNP [dm3] 3L_3796240_SNP [dm6]	T	G	3.304e^-4	1	INTRON CG32264
2R	13353381	2R_13353381_SNP [dm3] 2R_17465876_SNP [dm6]	A	T	3.318e^-4	1	DOWNSTREAM Tes & 1 other INTERGENIC
3R	5097536	3R_5097536_SNP [dm3] 3R_9271814_SNP [dm6]	G	A	3.326e^-4	1	INTERGENIC
2L	4417234	2L_4417234_SNP [dm3] 2L_4417234_SNP [dm6]	G	C	3.332e^-4	1	INTRON CG15431	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16788135	2L_16788135_SNP [dm3] 2L_16788135_SNP [dm6]	T	A	3.333e^-4	1	UTR_3_PRIME Mhc DOWNSTREAM Cyt-b5-r	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9544893	2L_9544893_SNP [dm3] 2L_9544893_SNP [dm6]	A	T	3.337e^-4	1	UPSTREAM CG13114 DOWNSTREAM CG13113 INTERGENIC
3L	1553604	3L_1553604_SNP [dm3] 3L_1553604_SNP [dm6]	A	G	3.338e^-4	1	UTR_5_PRIME Cct2 DOWNSTREAM Cct1	TF binding site mE1_TFBS_cad
3L	3796310	3L_3796310_SNP [dm3] 3L_3796310_SNP [dm6]	A	T	3.339e^-4	1	INTRON CG32264
2L	3379977	2L_3379977_SNP [dm3] 2L_3379977_SNP [dm6]	A	T	3.342e^-4	1	INTERGENIC
2R	19878827	2R_19878827_SNP [dm3] 2R_23991304_SNP [dm6]	C	T	3.350e^-4	1	SYNONYMOUS_CODING Pask DOWNSTREAM CG3860
3R	15151177	3R_15151177_SNP [dm3] 3R_19325455_SNP [dm6]	A	G	3.350e^-4	1	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	6735834	3L_6735834_SNP [dm3] 3L_6742734_SNP [dm6]	G	C	3.353e^-4	1	UTR_5_PRIME dikar INTRON dikar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	16795723	3R_16795723_SNP [dm3] 3R_20970001_SNP [dm6]	A	G	3.358e^-4	1	INTRON Atpalpha
2R	15469540	2R_15469540_SNP [dm3] 2R_19582035_SNP [dm6]	T	C	3.361e^-4	1	INTRON sm
2R	9746327	2R_9746327_SNP [dm3] 2R_13858822_SNP [dm6]	G	A	3.361e^-4	1	UPSTREAM Uba3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	8705569	2R_8705569_SNP [dm3] 2R_12818064_SNP [dm6]	T	A	3.367e^-4	1	INTERGENIC
2R	10319980	2R_10319980_SNP [dm3] 2R_14432475_SNP [dm6]	G	A	3.368e^-4	1	UPSTREAM phyl DOWNSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	5144752	3R_5144752_SNP [dm3] 3R_9319030_SNP [dm6]	T	C	3.385e^-4	1	INTRON CG8861
3R	17803139	3R_17803139_SNP [dm3] 3R_21977417_SNP [dm6]	G	A	3.391e^-4	1	INTRON Eip93F	TF binding site BDTNP1_TFBS_dl
3R	14341294	3R_14341294_SNP [dm3] 3R_18515572_SNP [dm6]	T	A	3.394e^-4	1	INTRON fru	TF binding site BDTNP1_TFBS_twi
3R	5679820	3R_5679820_SNP [dm3] 3R_9854098_SNP [dm6]	A	T	3.395e^-4	1	INTRON Teh1
2R	1140371	2R_1140371_SNP [dm3] 2R_5252866_SNP [dm6]	A	G	3.404e^-4	1	INTERGENIC
3L	5825821	3L_5825821_SNP [dm3] 3L_5832721_SNP [dm6]	G	C	3.409e^-4	1	INTRON vn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3796276	3L_3796276_SNP [dm3] 3L_3796276_SNP [dm6]	A	T	3.410e^-4	1	INTRON CG32264
2L	19728566	2L_19728566_SNP [dm3] 2L_19728566_SNP [dm6]	A	C	3.410e^-4	1	SYNONYMOUS_CODING Lar	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12169396	3L_12169396_SNP [dm3] 3L_12176296_SNP [dm6]	C	T	3.414e^-4	1	UPSTREAM Rh7 INTERGENIC
2L	11380211	2L_11380211_SNP [dm3] 2L_11380211_SNP [dm6]	T	A	3.431e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2R	12046428	2R_12046428_SNP [dm3] 2R_16158923_SNP [dm6]	A	T	3.439e^-4	1	UPSTREAM CG10734 INTRON lbk
2R	14641630	2R_14641630_SNP [dm3] 2R_18754125_SNP [dm6]	G	T	3.448e^-4	1	UTR_3_PRIME Hs3st-A UPSTREAM Cyp12b2
2R	18935001	2R_18935001_SNP [dm3] 2R_23047478_SNP [dm6]	A	T	3.451e^-4	1	SYNONYMOUS_CODING twi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	25742115	3R_25742115_SNP [dm3] 3R_29916393_SNP [dm6]	A	T	3.465e^-4	1	INTRON trp
2R	17223321	2R_17223321_SNP [dm3] 2R_21335816_SNP [dm6]	A	C	3.469e^-4	1	SYNONYMOUS_CODING dom DOWNSTREAM snoRNA:Me28S-G2596 & 1 other INTRON dom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9746415	2R_9746415_DEL [dm3] 2R_13858910_DEL [dm6]	TC	T	3.474e^-4	1	UPSTREAM Uba3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	4333714	2R_4333714_SNP [dm3] 2R_8446209_SNP [dm6]	A	G	3.490e^-4	1	SYNONYMOUS_CODING Cyp4e2	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	4738122	2L_4738122_SNP [dm3] 2L_4738122_SNP [dm6]	G	T	3.502e^-4	1	INTRON CG15630	TF binding site mE1_TFBS_inv
2R	1837254	2R_1837254_SNP [dm3] 2R_5949749_SNP [dm6]	A	T	3.514e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi transposable element FlyBase
3R	7093944	3R_7093944_SNP [dm3] 3R_11268222_SNP [dm6]	T	C	3.516e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12385795	2L_12385795_SNP [dm3] 2L_12385795_SNP [dm6]	A	G	3.518e^-4	1	INTRON bru-2
3R	14071193	3R_14071193_SNP [dm3] 3R_18245471_SNP [dm6]	A	T	3.536e^-4	1	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	19728530	2L_19728530_SNP [dm3] 2L_19728530_SNP [dm6]	C	G	3.537e^-4	1	SYNONYMOUS_CODING Lar	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	3024826	X_3024826_SNP [dm3] X_3130793_SNP [dm6]	A	C	3.538e^-4	1	SYNONYMOUS_CODING kirre	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14040926	3L_14040926_SNP [dm3] 3L_14047826_SNP [dm6]	T	C	3.540e^-4	1	INTRON blue	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10797758	X_10797758_SNP [dm3] X_10903725_SNP [dm6]	A	C	3.542e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cnc
2R	14988860	2R_14988860_SNP [dm3] 2R_19101355_SNP [dm6]	G	A	3.543e^-4	1	INTRON 5-HT1A
2L	7146066	2L_7146066_SNP [dm3] 2L_7146066_SNP [dm6]	A	T	3.555e^-4	1	DOWNSTREAM CR44612 INTRON Pvf3
2R	9746448	2R_9746448_SNP [dm3] 2R_13858943_SNP [dm6]	A	C	3.557e^-4	1	UPSTREAM Uba3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	17423426	3L_17423426_SNP [dm3] 3L_17430326_SNP [dm6]	G	C	3.561e^-4	1	SYNONYMOUS_CODING CG32174 UTR_3_PRIME frc	TF binding site BDTNP1_TFBS_dl
3L	5617448	3L_5617448_SNP [dm3] 3L_5624348_SNP [dm6]	A	G	3.571e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	20221788	X_20221788_SNP [dm3] X_20350761_SNP [dm6]	T	C	3.585e^-4	1	INTERGENIC
2L	1213033	2L_1213033_SNP [dm3] 2L_1213033_SNP [dm6]	A	T	3.588e^-4	1	INTERGENIC
X	16587689	X_16587689_SNP [dm3] X_16693656_SNP [dm6]	G	A	3.589e^-4	1	INTRON Sep4
2R	20801424	2R_20801424_SNP [dm3] 2R_24913901_SNP [dm6]	C	G	3.589e^-4	1	SYNONYMOUS_CODING NaCP60E UTR_3_PRIME NaCP60E	TF binding site mE1_TFBS_inv
3L	2485909	3L_2485909_SNP [dm3] 3L_2485909_SNP [dm6]	T	C	3.594e^-4	1	INTRON CG45186	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2R	17223201	2R_17223201_SNP [dm3] 2R_21335696_SNP [dm6]	A	C	3.595e^-4	1	SYNONYMOUS_CODING dom DOWNSTREAM snoRNA:Me28S-G2596 & 1 other INTRON dom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19516376	2L_19516376_SNP [dm3] 2L_19516376_SNP [dm6]	A	G	3.600e^-4	1	INTRON CG10186	TF binding site mE1_TFBS_chinmo
X	21883787	X_21883787_SNP [dm3] X_22481951_SNP [dm6]	T	C	3.605e^-4	1	UTR_5_PRIME CG12576 UPSTREAM Cp110 INTRON CG12576	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	14589183	2R_14589183_SNP [dm3] 2R_18701678_SNP [dm6]	A	G	3.605e^-4	1	UTR_3_PRIME Sik3 INTRON Sik3
3L	3592239	3L_3592239_SNP [dm3] 3L_3592239_SNP [dm6]	A	T	3.607e^-4	1	INTRON Eip63E	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	15265655	3L_15265655_SNP [dm3] 3L_15272555_SNP [dm6]	C	A	3.615e^-4	1	INTERGENIC
3L	2626748	3L_2626748_SNP [dm3] 3L_2626748_SNP [dm6]	C	T	3.627e^-4	1	INTRON Pxn	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	839306	3L_839306_SNP [dm3] 3L_839306_SNP [dm6]	G	A	3.628e^-4	1	SYNONYMOUS_CODING CG13887 UTR_3_PRIME CG13887 DOWNSTREAM CG13902
2R	19573478	2R_19573478_SNP [dm3] 2R_23685955_SNP [dm6]	C	T	3.630e^-4	1	UPSTREAM l_2_efl INTRON St3
3R	8346482	3R_8346482_SNP [dm3] 3R_12520760_SNP [dm6]	C	T	3.639e^-4	1	INTRON Octbeta3R
2R	17215904	2R_17215904_SNP [dm3] 2R_21328399_SNP [dm6]	G	C	3.647e^-4	1	DOWNSTREAM snoRNA:Me28S-A2589b INTRON dom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10510065	2R_10510065_SNP [dm3] 2R_14622560_SNP [dm6]	A	T	3.649e^-4	1	UPSTREAM snoRNA:Me28S-U1848 & 4 others DOWNSTREAM snoRNA:Me18S-C1366 & 2 others INTRON Uhg5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	4730324	X_4730324_SNP [dm3] X_4836291_SNP [dm6]	G	A	3.649e^-4	1	INTERGENIC
2L	18158120	2L_18158120_SNP [dm3] 2L_18158120_SNP [dm6]	T	C	3.649e^-4	1	NON_SYNONYMOUS_CODING CG7200 DOWNSTREAM CG5783	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	2493141	3L_2493141_SNP [dm3] 3L_2493141_SNP [dm6]	T	C	3.650e^-4	1	DOWNSTREAM CG1146 INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12384815	2L_12384815_SNP [dm3] 2L_12384815_SNP [dm6]	C	T	3.650e^-4	1	INTRON bru-2
2R	13662852	2R_13662852_SNP [dm3] 2R_17775347_SNP [dm6]	G	T	3.651e^-4	1	SYNONYMOUS_CODING fab1 UTR_3_PRIME CG33981
2L	16878414	2L_16878414_SNP [dm3] 2L_16878414_SNP [dm6]	T	C	3.664e^-4	1	UTR_3_PRIME CG32832 DOWNSTREAM CG32832 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	6255125	2L_6255125_SNP [dm3] 2L_6255125_SNP [dm6]	C	A	3.667e^-4	1	UPSTREAM CG9486 INTRON Ddr
2R	3623272	2R_3623272_INS [dm3] 2R_7735767_INS [dm6]	A	AA	3.672e^-4	1	UPSTREAM CG18812 INTERGENIC
2L	4713574	2L_4713574_SNP [dm3] 2L_4713574_SNP [dm6]	A	G	3.679e^-4	1	INTRON CG34351	TF binding site mE1_TFBS_inv
3L	8347273	3L_8347273_SNP [dm3] 3L_8354173_SNP [dm6]	A	T	3.679e^-4	1	SYNONYMOUS_CODING CG17352 UTR_3_PRIME CG17352 DOWNSTREAM mir-4913	TF binding site mE1_TFBS_cad
2L	4794489	2L_4794489_SNP [dm3] 2L_4794489_SNP [dm6]	A	C	3.690e^-4	1	UPSTREAM CG3294 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2806801	2L_2806801_SNP [dm3] 2L_2806801_SNP [dm6]	G	T	3.693e^-4	1	INTRON daw
2R	9746412	2R_9746412_SNP [dm3] 2R_13858907_SNP [dm6]	A	C	3.710e^-4	1	UPSTREAM Uba3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	16697615	2L_16697615_SNP [dm3] 2L_16697615_SNP [dm6]	C	T	3.715e^-4	1	SYNONYMOUS_CODING grp UPSTREAM mir-9c & 2 others EXON CR44975
2R	6606285	2R_6606285_SNP [dm3] 2R_10718780_SNP [dm6]	A	T	3.715e^-4	1	DOWNSTREAM stan INTRON stan
X	6404450	X_6404450_SNP [dm3] X_6510417_SNP [dm6]	G	T	3.727e^-4	1	INTRON CG42340	TF binding site mE1_TFBS_inv
2L	19731233	2L_19731233_SNP [dm3] 2L_19731233_SNP [dm6]	G	A	3.734e^-4	1	UTR_3_PRIME Lar DOWNSTREAM CG10462
2L	18010427	2L_18010427_SNP [dm3] 2L_18010427_SNP [dm6]	C	T	3.741e^-4	1	UTR_3_PRIME elfless DOWNSTREAM CG31740
3R	4156471	3R_4156471_SNP [dm3] 3R_8330749_SNP [dm6]	T	C	3.743e^-4	1	INTRON Poxm	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6330329	2R_6330329_SNP [dm3] 2R_10442824_SNP [dm6]	T	C	3.748e^-4	1	INTRON Galphao
3L	12071536	3L_12071536_SNP [dm3] 3L_12078436_SNP [dm6]	A	C	3.752e^-4	1	INTRON Sema-5c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12837741	3L_12837741_SNP [dm3] 3L_12844641_SNP [dm6]	T	C	3.753e^-4	1	UTR_3_PRIME CG10948
2L	5480048	2L_5480048_SNP [dm3] 2L_5480048_SNP [dm6]	T	A	3.760e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	18640053	2L_18640053_SNP [dm3] 2L_18640053_SNP [dm6]	C	T	3.766e^-4	1	INTRON MESR3
3R	17274694	3R_17274694_SNP [dm3] 3R_21448972_SNP [dm6]	A	T	3.767e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_inv
2L	11511556	2L_11511556_SNP [dm3] 2L_11511556_SNP [dm6]	G	A	3.772e^-4	1	INTRON CG6509	TF binding site mE1_TFBS_cad
2R	17574000	2R_17574000_SNP [dm3] 2R_21686495_SNP [dm6]	C	T	3.773e^-4	1	SYNONYMOUS_CODING Tbp DOWNSTREAM CG10306	TF binding site BDTNP1_TFBS_dl
X	4331308	X_4331308_SNP [dm3] X_4437275_SNP [dm6]	G	A	3.776e^-4	1	INTRON CR32773 & 1 other
2R	6859924	2R_6859924_SNP [dm3] 2R_10972419_SNP [dm6]	A	C	3.780e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3L	23230128	3L_23230128_SNP [dm3] 3L_23237028_SNP [dm6]	A	G	3.786e^-4	1	INTRON nAChRalpha4	transposable element FlyBase
2L	11472482	2L_11472482_SNP [dm3] 2L_11472482_SNP [dm6]	A	G	3.786e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	12242384	3L_12242384_SNP [dm3] 3L_12249284_SNP [dm6]	G	A	3.799e^-4	1	INTRON app	TF binding site mE1_TFBS_cad
X	21458939	X_21458939_SNP [dm3] X_21587912_SNP [dm6]	T	A	3.805e^-4	1	INTERGENIC
2R	15467492	2R_15467492_SNP [dm3] 2R_19579987_SNP [dm6]	G	A	3.810e^-4	1	INTRON sm
3R	12688787	3R_12688787_SNP [dm3] 3R_16863065_SNP [dm6]	A	G	3.815e^-4	1	INTRON iab-8
3R	8337236	3R_8337236_SNP [dm3] 3R_12511514_SNP [dm6]	C	T	3.822e^-4	1	DOWNSTREAM Octbeta3R & 1 other INTERGENIC
2L	9156387	2L_9156387_SNP [dm3] 2L_9156387_SNP [dm6]	T	G	3.823e^-4	1	INTRON CG32982
2L	9544826	2L_9544826_DEL [dm3] 2L_9544826_DEL [dm6]	TGGC	T	3.829e^-4	1	UTR_3_PRIME CG13113 UPSTREAM CG13114
3L	8209861	3L_8209861_INS [dm3] 3L_8216761_INS [dm6]	A	ATGTACATA	3.832e^-4	1	DOWNSTREAM CG8012 INTERGENIC
2L	12181264	2L_12181264_DEL [dm3] 2L_12181264_DEL [dm6]	AATAG	A	3.863e^-4	1	INTRON aret
2R	6894282	2R_6894282_SNP [dm3] 2R_11006777_SNP [dm6]	T	G	3.866e^-4	1	INTRON luna
2L	15456418	2L_15456418_SNP [dm3] 2L_15456418_SNP [dm6]	A	C	3.870e^-4	1	INTERGENIC
3R	17226335	3R_17226335_SNP [dm3] 3R_21400613_SNP [dm6]	T	A	3.890e^-4	1	UPSTREAM CG6475 INTERGENIC
3R	8163215	3R_8163215_SNP [dm3] 3R_12337493_SNP [dm6]	G	A	3.899e^-4	1	INTRON CR44941
2L	18013670	2L_18013670_SNP [dm3] 2L_18013670_SNP [dm6]	G	A	3.902e^-4	1	INTRON rdo	regulatory region REDfly_CRMs
2L	2390555	2L_2390555_SNP [dm3] 2L_2390555_SNP [dm6]	C	G	3.904e^-4	1	SYNONYMOUS_CODING CG43750
3L	23117633	3L_23117633_SNP [dm3] 3L_23124533_SNP [dm6]	G	T	3.918e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
2R	20115414	2R_20115414_SNP [dm3] 2R_24227891_SNP [dm6]	G	T	3.927e^-4	1	INTRON CG30419
3L	9750670	3L_9750670_SNP [dm3] 3L_9757570_SNP [dm6]	T	C	3.944e^-4	1	INTRON CG42268
3L	18481662	3L_18481662_SNP [dm3] 3L_18488562_SNP [dm6]	T	A	3.955e^-4	1	SYNONYMOUS_CODING AstC-R2	TF binding site mE1_TFBS_cad
2L	11380058	2L_11380058_SNP [dm3] 2L_11380058_SNP [dm6]	T	A	3.963e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3L	16871863	3L_16871863_SNP [dm3] 3L_16878763_SNP [dm6]	G	A	3.973e^-4	1	SYNONYMOUS_CODING CG32170 INTRON Lmpt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4774645	3L_4774645_SNP [dm3] 3L_4774645_SNP [dm6]	A	G	3.974e^-4	1	INTRON RhoGEF64C
3R	14254360	3R_14254360_SNP [dm3] 3R_18428638_SNP [dm6]	T	G	3.976e^-4	1	UTR_3_PRIME fru INTRON fru
X	12624268	X_12624268_DEL [dm3] X_12730235_DEL [dm6]	AAGTA	CT	3.978e^-4	1	INTRON Smr & 1 other
3R	24115003	3R_24115003_SNP [dm3] 3R_28289281_SNP [dm6]	A	C	3.989e^-4	1	INTERGENIC
2L	7885534	2L_7885534_SNP [dm3] 2L_7885534_SNP [dm6]	C	G	3.998e^-4	1	UTR_5_PRIME CG34132 UPSTREAM SmE INTRON CG7102	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	4337026	2R_4337026_SNP [dm3] 2R_8449521_SNP [dm6]	A	T	3.999e^-4	1	NON_SYNONYMOUS_CODING Cyp4e1 DOWNSTREAM Mal-A1
2L	14676023	2L_14676023_SNP [dm3] 2L_14676023_SNP [dm6]	A	G	4.000e^-4	1	INTRON osp
2L	11074204	2L_11074204_SNP [dm3] 2L_11074204_SNP [dm6]	A	T	4.005e^-4	1	DOWNSTREAM CR45725 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	21605282	3R_21605282_SNP [dm3] 3R_25779560_SNP [dm6]	T	A	4.008e^-4	1	INTERGENIC
2R	2516326	2R_2516326_SNP [dm3] 2R_6628821_SNP [dm6]	C	A	4.008e^-4	1	INTRON Vha16-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12139951	2R_12139951_DEL [dm3] 2R_16252446_DEL [dm6]	TAGACGAC	T	4.016e^-4	1	INTRON CngA
3R	6552728	3R_6552728_SNP [dm3] 3R_10727006_SNP [dm6]	A	T	4.017e^-4	1	INTERGENIC
X	6776903	X_6776903_SNP [dm3] X_6882870_SNP [dm6]	G	A	4.017e^-4	1	INTERGENIC
2L	6255170	2L_6255170_SNP [dm3] 2L_6255170_SNP [dm6]	A	C	4.023e^-4	1	UPSTREAM CG9486 INTRON Ddr
3L	11363566	3L_11363566_INS [dm3] 3L_11370466_INS [dm6]	A	ATTTAATAGA	4.024e^-4	1	INTERGENIC
2R	16439087	2R_16439087_SNP [dm3] 2R_20551582_SNP [dm6]	C	T	4.031e^-4	1	SYNONYMOUS_CODING CG18065 UTR_5_PRIME CG13430 UPSTREAM CG13430	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_Ubx
3R	23265018	3R_23265018_SNP [dm3] 3R_27439296_SNP [dm6]	A	G	4.035e^-4	1	INTRON CG44290	TF binding site BDTNP1_TFBS_twi
2L	17982106	2L_17982106_SNP [dm3] 2L_17982106_SNP [dm6]	G	A	4.039e^-4	1	SYNONYMOUS_CODING btv
2L	5064447	2L_5064447_SNP [dm3] 2L_5064447_SNP [dm6]	C	T	4.054e^-4	1	UTR_5_PRIME qtc INTRON qtc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	6374059	3L_6374059_SNP [dm3] 3L_6380959_SNP [dm6]	C	A	4.065e^-4	1	INTERGENIC
3L	6985039	3L_6985039_SNP [dm3] 3L_6991939_SNP [dm6]	G	T	4.074e^-4	1	INTRON bin
3R	25249904	3R_25249904_SNP [dm3] 3R_29424182_SNP [dm6]	A	G	4.080e^-4	1	INTRON Ptp99A
2L	9544815	2L_9544815_SNP [dm3] 2L_9544815_SNP [dm6]	A	T	4.088e^-4	1	UTR_3_PRIME CG13113 UPSTREAM CG13114
2L	16364225	2L_16364225_SNP [dm3] 2L_16364225_SNP [dm6]	A	T	4.107e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2L	7004360	2L_7004360_SNP [dm3] 2L_7004360_SNP [dm6]	C	T	4.112e^-4	1	INTRON uif
2R	17159806	2R_17159806_SNP [dm3] 2R_21272301_SNP [dm6]	G	A	4.118e^-4	1	INTRON Rgk3
3L	5161003	3L_5161003_SNP [dm3] 3L_5167903_SNP [dm6]	A	G	4.123e^-4	1	INTRON shep
3R	25727397	3R_25727397_DEL [dm3] 3R_29901675_DEL [dm6]	TATTAAGTGACAGT...	T	4.127e^-4	1	INTRON CG31038
X	18247695	X_18247695_SNP [dm3] X_18353662_SNP [dm6]	T	G	4.129e^-4	1	INTRON CG6123
2R	15467358	2R_15467358_SNP [dm3] 2R_19579853_SNP [dm6]	C	G	4.132e^-4	1	INTRON sm
X	20221063	X_20221063_SNP [dm3] X_20350036_SNP [dm6]	T	G	4.132e^-4	1	INTERGENIC
2R	2021233	2R_2021233_SNP [dm3] 2R_6133728_SNP [dm6]	A	G	4.135e^-4	1	INTRON EcR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	1723931	2R_1723931_SNP [dm3] 2R_5836426_SNP [dm6]	T	C	4.141e^-4	1	INTRON dpr12
3L	5650459	3L_5650459_SNP [dm3] 3L_5657359_SNP [dm6]	C	G	4.142e^-4	1	UTR_3_PRIME lin-28 UPSTREAM sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	17393625	3R_17393625_SNP [dm3] 3R_21567903_SNP [dm6]	A	T	4.143e^-4	1	INTRON CG15498
3R	10291896	3R_10291896_SNP [dm3] 3R_14466174_SNP [dm6]	A	C	4.152e^-4	1	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14988823	2R_14988823_SNP [dm3] 2R_19101318_SNP [dm6]	T	C	4.153e^-4	1	INTRON 5-HT1A
3R	9065129	3R_9065129_SNP [dm3] 3R_13239407_SNP [dm6]	T	C	4.155e^-4	1	INTRON Ace
X	6159683	X_6159683_SNP [dm3] X_6265650_SNP [dm6]	T	C	4.158e^-4	1	INTRON schlank	TF binding site BDTNP1_TFBS_twi
2R	17926749	2R_17926749_SNP [dm3] 2R_22039244_SNP [dm6]	A	G	4.159e^-4	1	INTRON CG34370
3L	6387950	3L_6387950_SNP [dm3] 3L_6394850_SNP [dm6]	C	G	4.173e^-4	1	INTERGENIC
X	8947722	X_8947722_SNP [dm3] X_9053689_SNP [dm6]	T	C	4.186e^-4	1	UTR_3_PRIME CG42388 DOWNSTREAM CG42388	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21388965	3R_21388965_SNP [dm3] 3R_25563243_SNP [dm6]	T	A	4.195e^-4	1	INTRON msi
2R	19431283	2R_19431283_SNP [dm3] 2R_23543760_SNP [dm6]	A	G	4.196e^-4	1	UPSTREAM CG30185 INTRON Gr59f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	2544149	2R_2544149_SNP [dm3] 2R_6656644_SNP [dm6]	G	A	4.199e^-4	1	UPSTREAM sced & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	7213506	2L_7213506_SNP [dm3] 2L_7213506_SNP [dm6]	C	A	4.203e^-4	1	INTRON CG13784	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4582520	3R_4582520_SNP [dm3] 3R_8756798_SNP [dm6]	C	G	4.206e^-4	1	DOWNSTREAM CR44228 INTRON CG11768 & 1 other
2L	4382430	2L_4382430_SNP [dm3] 2L_4382430_SNP [dm6]	T	C	4.208e^-4	1	SYNONYMOUS_CODING CG17612 DOWNSTREAM CG3338	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	2390908	2L_2390908_SNP [dm3] 2L_2390908_SNP [dm6]	G	A	4.212e^-4	1	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
2L	1153054	2L_1153054_SNP [dm3] 2L_1153054_SNP [dm6]	G	C	4.220e^-4	1	SYNONYMOUS_CODING capt	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	19132710	2R_19132710_INS [dm3] 2R_23245187_INS [dm6]	T	TCCTCCGCGAGGGAGCT...	4.224e^-4	1	UTR_5_PRIME yip3 INTRON yip3
X	18394913	X_18394913_SNP [dm3] X_18500880_SNP [dm6]	G	A	4.227e^-4	1	SYNONYMOUS_CODING Rad51D UPSTREAM GalNAc-T2 DOWNSTREAM Wnt5	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_ttk
2R	15005859	2R_15005859_SNP [dm3] 2R_19118354_SNP [dm6]	C	G	4.239e^-4	1	NON_SYNONYMOUS_CODING 5-HT1A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14973223	3R_14973223_SNP [dm3] 3R_19147501_SNP [dm6]	T	A	4.239e^-4	1	UTR_5_PRIME Ppcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	1540044	2L_1540044_SNP [dm3] 2L_1540044_SNP [dm6]	A	G	4.241e^-4	1	INTERGENIC
2L	4708366	2L_4708366_SNP [dm3] 2L_4708366_SNP [dm6]	T	A	4.242e^-4	1	INTRON CG34351
X	22409001	X_22409001_SNP [dm3] X_23007165_SNP [dm6]	A	C	4.250e^-4	1	UPSTREAM CR45009 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1895298	3L_1895298_SNP [dm3] 3L_1895298_SNP [dm6]	A	C	4.271e^-4	1	SYNONYMOUS_CODING CG1887
2L	12549583	2L_12549583_SNP [dm3] 2L_12549583_SNP [dm6]	C	A	4.277e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18481668	3L_18481668_SNP [dm3] 3L_18488568_SNP [dm6]	G	T	4.284e^-4	1	SYNONYMOUS_CODING AstC-R2	TF binding site mE1_TFBS_cad
2L	6764112	2L_6764112_SNP [dm3] 2L_6764112_SNP [dm6]	G	A	4.290e^-4	1	NON_SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_sens
2R	10948490	2R_10948490_SNP [dm3] 2R_15060985_SNP [dm6]	G	T	4.292e^-4	1	INTERGENIC
3L	7728698	3L_7728698_SNP [dm3] 3L_7735598_SNP [dm6]	T	A	4.298e^-4	1	INTRON CG32373 & 1 other
3R	22769091	3R_22769091_DEL [dm3] 3R_26943369_DEL [dm6]	AA	A	4.305e^-4	1	INTRON sda	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18004744	2L_18004744_SNP [dm3] 2L_18004744_SNP [dm6]	C	A	4.307e^-4	1	INTERGENIC
2L	12181255	2L_12181255_SNP [dm3] 2L_12181255_SNP [dm6]	G	A	4.307e^-4	1	INTRON aret
X	12717281	X_12717281_DEL [dm3] X_12823248_DEL [dm6]	TTGCCTTATTGCTTTCGCTT...	T	4.314e^-4	1	INTRON Pde9
2R	13114730	2R_13114730_SNP [dm3] 2R_17227225_SNP [dm6]	T	C	4.314e^-4	1	INTRON mbl
3L	10856100	3L_10856100_SNP [dm3] 3L_10863000_SNP [dm6]	C	T	4.315e^-4	1	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
X	17600021	X_17600021_SNP [dm3] X_17705988_SNP [dm6]	T	C	4.321e^-4	1	UTR_3_PRIME par-6
3L	4771131	3L_4771131_SNP [dm3] 3L_4771131_SNP [dm6]	T	C	4.337e^-4	1	INTRON RhoGEF64C
3R	21388966	3R_21388966_SNP [dm3] 3R_25563244_SNP [dm6]	T	A	4.340e^-4	1	INTRON msi
2R	19890195	2R_19890195_SNP [dm3] 2R_24002672_SNP [dm6]	G	T	4.340e^-4	1	INTRON Unc-89	TF binding site mE1_TFBS_chinmo
3R	15141936	3R_15141936_SNP [dm3] 3R_19316214_SNP [dm6]	C	A	4.342e^-4	1	INTRON Dl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	2183707	2L_2183707_SNP [dm3] 2L_2183707_SNP [dm6]	C	T	4.343e^-4	1	EXON CR43751	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	5080314	X_5080314_SNP [dm3] X_5186281_SNP [dm6]	T	G	4.388e^-4	1	INTRON rg & 1 other
3R	21927665	3R_21927665_SNP [dm3] 3R_26101943_SNP [dm6]	G	T	4.391e^-4	1	INTERGENIC
2L	6113652	2L_6113652_SNP [dm3] 2L_6113652_SNP [dm6]	T	C	4.394e^-4	1	INTRON stai
2R	9388242	2R_9388242_SNP [dm3] 2R_13500737_SNP [dm6]	G	A	4.400e^-4	1	UTR_5_PRIME mars INTRON drk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10560877	2L_10560877_SNP [dm3] 2L_10560877_SNP [dm6]	A	G	4.402e^-4	1	INTRON Trim9
X	16668693	X_16668693_SNP [dm3] X_16774660_SNP [dm6]	C	T	4.406e^-4	1	INTRON if	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	21890342	X_21890342_SNP [dm3] X_22488506_SNP [dm6]	T	C	4.408e^-4	1	INTRON l_1_G0196 EXON CR43493
3L	2443302	3L_2443302_DEL [dm3] 3L_2443302_DEL [dm6]	GTTG	G	4.413e^-4	1	INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18196499	2L_18196499_SNP [dm3] 2L_18196499_SNP [dm6]	A	T	4.414e^-4	1	INTRON CG42750	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16558480	2L_16558480_SNP [dm3] 2L_16558480_SNP [dm6]	C	G	4.420e^-4	1	NON_SYNONYMOUS_CODING CG42389	TF binding site mE1_TFBS_cad
3L	2960286	3L_2960286_SNP [dm3] 3L_2960286_SNP [dm6]	A	G	4.422e^-4	1	NON_SYNONYMOUS_CODING CG34025 DOWNSTREAM Shab
2R	5262569	2R_5262569_SNP [dm3] 2R_9375064_SNP [dm6]	G	A	4.426e^-4	1	INTRON CG13954	TF binding site mE1_TFBS_cad
2L	7146062	2L_7146062_SNP [dm3] 2L_7146062_SNP [dm6]	A	G	4.427e^-4	1	DOWNSTREAM CR44612 INTRON Pvf3
2L	2738635	2L_2738635_SNP [dm3] 2L_2738635_SNP [dm6]	T	C	4.438e^-4	1	DOWNSTREAM mir-4914 INTRON CG31689
2R	9746419	2R_9746419_SNP [dm3] 2R_13858914_SNP [dm6]	A	T	4.444e^-4	1	UPSTREAM Uba3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	10989495	3L_10989495_SNP [dm3] 3L_10996395_SNP [dm6]	A	G	4.450e^-4	1	INTRON klu
3L	2277684	3L_2277684_SNP [dm3] 3L_2277684_SNP [dm6]	T	C	4.454e^-4	1	SYNONYMOUS_CODING yellow-g2
3L	451328	3L_451328_SNP [dm3] 3L_451328_SNP [dm6]	C	G	4.461e^-4	1	NON_SYNONYMOUS_CODING klar	TF binding site mE1_TFBS_chinmo
2R	1343253	2R_1343253_INS [dm3] 2R_5455748_INS [dm6]	G	AC	4.461e^-4	1	UTR_3_PRIME laccase2
3L	5650243	3L_5650243_SNP [dm3] 3L_5657143_SNP [dm6]	T	C	4.469e^-4	1	UTR_3_PRIME lin-28 UPSTREAM sif	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17067921	2R_17067921_SNP [dm3] 2R_21180416_SNP [dm6]	G	A	4.477e^-4	1	UPSTREAM tRNA:CR33539 INTRON Pu	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14637154	2R_14637154_DEL [dm3] 2R_18749649_DEL [dm6]	GATATG	CCCA	4.486e^-4	1	INTRON Hs3st-A
3R	21388960	3R_21388960_SNP [dm3] 3R_25563238_SNP [dm6]	C	T	4.501e^-4	1	INTRON msi
2L	7214580	2L_7214580_SNP [dm3] 2L_7214580_SNP [dm6]	A	T	4.501e^-4	1	INTRON CG13784
3L	837721	3L_837721_SNP [dm3] 3L_837721_SNP [dm6]	C	G	4.506e^-4	1	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2R	3954862	2R_3954862_SNP [dm3] 2R_8067357_SNP [dm6]	C	T	4.511e^-4	1	NON_SYNONYMOUS_CODING CG17977 UPSTREAM lig	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
X	12869261	X_12869261_SNP [dm3] X_12975228_SNP [dm6]	A	T	4.524e^-4	1	NON_SYNONYMOUS_CODING CG12716 UPSTREAM CR43152
3R	7296278	3R_7296278_SNP [dm3] 3R_11470556_SNP [dm6]	C	T	4.530e^-4	1	INTERGENIC
3R	14341323	3R_14341323_SNP [dm3] 3R_18515601_SNP [dm6]	A	T	4.541e^-4	1	INTRON fru	TF binding site BDTNP1_TFBS_twi
2R	17176261	2R_17176261_SNP [dm3] 2R_21288756_SNP [dm6]	C	T	4.545e^-4	1	SYNONYMOUS_CODING CG10505	TF binding site mE1_TFBS_chinmo
2R	18935521	2R_18935521_SNP [dm3] 2R_23047998_SNP [dm6]	C	T	4.546e^-4	1	SYNONYMOUS_CODING twi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	11801151	X_11801151_SNP [dm3] X_11907118_SNP [dm6]	T	A	4.548e^-4	1	UPSTREAM CG43156 DOWNSTREAM pot INTERGENIC	TF binding site mE1_TFBS_zfh1
2L	2796220	2L_2796220_SNP [dm3] 2L_2796220_SNP [dm6]	C	T	4.555e^-4	1	UPSTREAM Syt1 INTRON Syt1
2L	11074055	2L_11074055_SNP [dm3] 2L_11074055_SNP [dm6]	T	C	4.572e^-4	1	DOWNSTREAM CR45725 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	21889308	X_21889308_SNP [dm3] X_22487472_SNP [dm6]	C	T	4.588e^-4	1	START_GAINED l_1_G0196 UTR_5_PRIME l_1_G0196 DOWNSTREAM CR43493 & 1 other
3R	4108511	3R_4108511_SNP [dm3] 3R_8282789_SNP [dm6]	A	G	4.599e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
X	21889592	X_21889592_SNP [dm3] X_22487756_SNP [dm6]	G	C	4.602e^-4	1	SYNONYMOUS_CODING l_1_G0196 DOWNSTREAM CR43493 & 1 other
2R	8328238	2R_8328238_SNP [dm3] 2R_12440733_SNP [dm6]	T	C	4.612e^-4	1	UTR_3_PRIME CG30334 INTRON Dyb	TF binding site mE1_TFBS_chinmo
3L	8546441	3L_8546441_SNP [dm3] 3L_8553341_SNP [dm6]	G	C	4.613e^-4	1	INTRON rhea	TF binding site BDTNP1_TFBS_twi
2L	19732053	2L_19732053_SNP [dm3] 2L_19732053_SNP [dm6]	C	T	4.623e^-4	1	UTR_3_PRIME Lar DOWNSTREAM CG10462 & 1 other
3L	16075370	3L_16075370_SNP [dm3] 3L_16082270_SNP [dm6]	C	T	4.632e^-4	1	UPSTREAM CG33258 DOWNSTREAM Mbs INTERGENIC
2L	7227555	2L_7227555_SNP [dm3] 2L_7227555_SNP [dm6]	T	A	4.634e^-4	1	UPSTREAM CG43799 INTRON Ndae1	TF binding site mE1_TFBS_HSA
2L	12386657	2L_12386657_SNP [dm3] 2L_12386657_SNP [dm6]	T	C	4.635e^-4	1	INTRON bru-2
X	5636628	X_5636628_SNP [dm3] X_5742595_SNP [dm6]	A	G	4.641e^-4	1	SYNONYMOUS_CODING IntS6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	17302405	X_17302405_SNP [dm3] X_17408372_SNP [dm6]	T	C	4.641e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12404994	2R_12404994_SNP [dm3] 2R_16517489_SNP [dm6]	C	A	4.642e^-4	1	INTRON Sema-2a	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17333125	2R_17333125_SNP [dm3] 2R_21445620_SNP [dm6]	A	G	4.643e^-4	1	INTRON Sdc
X	6198987	X_6198987_SNP [dm3] X_6304954_SNP [dm6]	G	T	4.660e^-4	1	INTRON CG3823	TF binding site mE1_TFBS_HSA
2R	15467344	2R_15467344_SNP [dm3] 2R_19579839_SNP [dm6]	G	A	4.668e^-4	1	INTRON sm
2L	16787914	2L_16787914_SNP [dm3] 2L_16787914_SNP [dm6]	C	T	4.675e^-4	1	DOWNSTREAM Cyt-b5-r INTRON Mhc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3919279	2R_3919279_SNP [dm3] 2R_8031774_SNP [dm6]	G	C	4.676e^-4	1	UTR_5_PRIME Optix	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	10801066	X_10801066_SNP [dm3] X_10907033_SNP [dm6]	A	G	4.685e^-4	1	NON_SYNONYMOUS_CODING CG43901	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10931645	2L_10931645_SNP [dm3] 2L_10931645_SNP [dm6]	A	G	4.686e^-4	1	INTRON dpr2
3L	10990615	3L_10990615_SNP [dm3] 3L_10997515_SNP [dm6]	G	A	4.690e^-4	1	INTRON klu	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	17267205	3R_17267205_SNP [dm3] 3R_21441483_SNP [dm6]	C	T	4.690e^-4	1	DOWNSTREAM lbe INTERGENIC
2L	10717533	2L_10717533_SNP [dm3] 2L_10717533_SNP [dm6]	C	G	4.692e^-4	1	INTERGENIC
2L	10055371	2L_10055371_SNP [dm3] 2L_10055371_SNP [dm6]	G	A	4.694e^-4	1	SYNONYMOUS_CODING Cpr31A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17361530	2R_17361530_SNP [dm3] 2R_21474025_SNP [dm6]	T	A	4.713e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
3L	3796478	3L_3796478_SNP [dm3] 3L_3796478_SNP [dm6]	C	A	4.713e^-4	1	INTRON CG32264
2L	9544798	2L_9544798_DEL [dm3] 2L_9544798_DEL [dm6]	AATAAGTCACCTCA...	A	4.717e^-4	1	UTR_3_PRIME CG13113 UPSTREAM CG13114	TF binding site mE1_TFBS_cad
2L	6935853	2L_6935853_SNP [dm3] 2L_6935853_SNP [dm6]	T	C	4.721e^-4	1	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18956925	2R_18956925_SNP [dm3] 2R_23069402_SNP [dm6]	C	A	4.729e^-4	1	UPSTREAM l_2_k09913 INTRON l_2_k09913
2L	4408979	2L_4408979_SNP [dm3] 2L_4408979_SNP [dm6]	T	A	4.730e^-4	1	SYNONYMOUS_CODING CG15431	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	20924380	2L_20924380_SNP [dm3] 2L_20924380_SNP [dm6]	A	C	4.735e^-4	1	DOWNSTREAM RPA2 EXON CR33318
2R	1130473	2R_1130473_SNP [dm3] 2R_5242968_SNP [dm6]	G	T	4.736e^-4	1	INTRON Nipped-A	TF binding site mE1_TFBS_HSA
3R	8165498	3R_8165498_SNP [dm3] 3R_12339776_SNP [dm6]	G	A	4.753e^-4	1	DOWNSTREAM CR44941 INTERGENIC
3L	8047362	3L_8047362_SNP [dm3] 3L_8054262_SNP [dm6]	A	T	4.753e^-4	1	DOWNSTREAM bip1 & 1 other INTERGENIC
X	20221138	X_20221138_SNP [dm3] X_20350111_SNP [dm6]	T	C	4.760e^-4	1	INTERGENIC
2L	1542452	2L_1542452_SNP [dm3] 2L_1542452_SNP [dm6]	T	A	4.778e^-4	1	INTERGENIC
2R	17212720	2R_17212720_SNP [dm3] 2R_21325215_SNP [dm6]	T	A	4.781e^-4	1	UPSTREAM snoRNA:Me28S-A2589a INTRON dom	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
2L	6255121	2L_6255121_SNP [dm3] 2L_6255121_SNP [dm6]	A	G	4.783e^-4	1	UPSTREAM CG9486 INTRON Ddr
3R	14327348	3R_14327348_SNP [dm3] 3R_18501626_SNP [dm6]	T	C	4.785e^-4	1	INTRON fru
3R	13897848	3R_13897848_SNP [dm3] 3R_18072126_SNP [dm6]	G	A	4.804e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19248968	X_19248968_SNP [dm3] X_19354935_SNP [dm6]	G	A	4.805e^-4	1	INTRON kek5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	16436024	2R_16436024_SNP [dm3] 2R_20548519_SNP [dm6]	C	T	4.806e^-4	1	UTR_3_PRIME Obp57d & 1 other UPSTREAM CG30148 & 1 other DOWNSTREAM Cpr57A	regulatory region REDfly_CRMs
2R	8563915	2R_8563915_SNP [dm3] 2R_12676410_SNP [dm6]	T	A	4.822e^-4	1	UTR_5_PRIME CG42708 UPSTREAM CG42708 INTRON CG42708	TF binding site mE1_TFBS_inv
X	3862846	X_3862846_SNP [dm3] X_3968813_SNP [dm6]	A	G	4.822e^-4	1	UPSTREAM CR45481 & 1 other DOWNSTREAM CG6414 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2R	17324522	2R_17324522_SNP [dm3] 2R_21437017_SNP [dm6]	C	T	4.824e^-4	1	INTRON Sdc
2L	7252412	2L_7252412_SNP [dm3] 2L_7252412_SNP [dm6]	C	T	4.833e^-4	1	SYNONYMOUS_CODING CG13786
3R	10265603	3R_10265603_SNP [dm3] 3R_14439881_SNP [dm6]	C	A	4.837e^-4	1	INTRON cv-c	TF binding site mE1_TFBS_sbb
2L	2684777	2L_2684777_SNP [dm3] 2L_2684777_SNP [dm6]	T	G	4.841e^-4	1	INTRON CG31690
X	11357097	X_11357097_SNP [dm3] X_11463064_SNP [dm6]	C	T	4.845e^-4	1	INTRON CG43155
3R	25591303	3R_25591303_SNP [dm3] 3R_29765581_SNP [dm6]	C	T	4.854e^-4	1	UPSTREAM kay INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	13859990	2R_13859990_SNP [dm3] 2R_17972485_SNP [dm6]	G	A	4.864e^-4	1	INTERGENIC
3R	8595512	3R_8595512_SNP [dm3] 3R_12769790_SNP [dm6]	A	T	4.869e^-4	1	INTRON beat-Vc
X	10904540	X_10904540_SNP [dm3] X_11010507_SNP [dm6]	C	T	4.872e^-4	1	INTRON CG42339
3R	24082226	3R_24082226_SNP [dm3] 3R_28256504_SNP [dm6]	A	G	4.874e^-4	1	INTERGENIC
2L	6255100	2L_6255100_SNP [dm3] 2L_6255100_SNP [dm6]	T	A	4.878e^-4	1	UPSTREAM CG9486 INTRON Ddr
3R	18050637	3R_18050637_SNP [dm3] 3R_22224915_SNP [dm6]	T	A	4.879e^-4	1	INTRON SKIP
2R	1130800	2R_1130800_SNP [dm3] 2R_5243295_SNP [dm6]	G	A	4.884e^-4	1	INTRON Nipped-A
2L	19516594	2L_19516594_SNP [dm3] 2L_19516594_SNP [dm6]	T	C	4.884e^-4	1	UTR_5_PRIME CG10186	TF binding site mE1_TFBS_chinmo
3R	9566266	3R_9566266_DEL [dm3] 3R_13740544_DEL [dm6]	AAGTCTTGAG	A	4.902e^-4	1	INTRON CG34383
2L	12600593	2L_12600593_SNP [dm3] 2L_12600593_SNP [dm6]	T	A	4.918e^-4	1	INTRON nub
3L	8364138	3L_8364138_SNP [dm3] 3L_8371038_SNP [dm6]	T	A	4.923e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	8364147	3L_8364147_SNP [dm3] 3L_8371047_SNP [dm6]	T	A	4.923e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
X	4730572	X_4730572_SNP [dm3] X_4836539_SNP [dm6]	T	A	4.926e^-4	1	INTERGENIC
3L	1849006	3L_1849006_INS [dm3] 3L_1849006_INS [dm6]	T	TGAATTCAGTTTT...	4.928e^-4	1	INTERGENIC
3L	17264477	3L_17264477_SNP [dm3] 3L_17271377_SNP [dm6]	T	C	4.928e^-4	1	INTERGENIC
2R	18346012	2R_18346012_SNP [dm3] 2R_22458507_SNP [dm6]	C	T	4.930e^-4	1	INTRON CG10384
3L	7739485	3L_7739485_SNP [dm3] 3L_7746385_SNP [dm6]	G	A	4.936e^-4	1	UPSTREAM CG13685 INTRON CG32373
2R	17339723	2R_17339723_SNP [dm3] 2R_21452218_SNP [dm6]	G	T	4.936e^-4	1	INTRON Sdc
2R	11714607	2R_11714607_SNP [dm3] 2R_15827102_SNP [dm6]	C	A	4.949e^-4	1	SYNONYMOUS_CODING Poxn INTRON tun
X	21892197	X_21892197_SNP [dm3] X_22490361_SNP [dm6]	A	G	4.953e^-4	1	INTRON l_1_G0196 & 1 other
2R	13663429	2R_13663429_SNP [dm3] 2R_17775924_SNP [dm6]	C	G	4.961e^-4	1	INTRON fab1 & 1 other
2R	9746354	2R_9746354_SNP [dm3] 2R_13858849_SNP [dm6]	T	C	4.962e^-4	1	UPSTREAM Uba3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	2865070	X_2865070_INS [dm3] X_2971037_INS [dm6]	C	CC	4.970e^-4	1	INTRON kirre & 1 other
3L	12623391	3L_12623391_SNP [dm3] 3L_12630291_SNP [dm6]	A	C	4.980e^-4	1	INTRON CR32111
3R	14071191	3R_14071191_SNP [dm3] 3R_18245469_SNP [dm6]	C	A	4.990e^-4	1	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6764102	2L_6764102_SNP [dm3] 2L_6764102_SNP [dm6]	A	G	4.991e^-4	1	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_sens
2R	14988843	2R_14988843_SNP [dm3] 2R_19101338_SNP [dm6]	A	T	4.997e^-4	1	INTRON 5-HT1A
3R	25289493	3R_25289493_SNP [dm3] 3R_29463771_SNP [dm6]	C	T	5.007e^-4	1	INTRON Ptp99A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14071917	3R_14071917_SNP [dm3] 3R_18246195_SNP [dm6]	G	A	5.008e^-4	1	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10279902	3L_10279902_SNP [dm3] 3L_10286802_SNP [dm6]	A	G	5.027e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14030400	3R_14030400_SNP [dm3] 3R_18204678_SNP [dm6]	G	C	5.033e^-4	1	INTRON CG7985
3R	26400608	3R_26400608_SNP [dm3] 3R_30574886_SNP [dm6]	A	T	5.037e^-4	1	UTR_3_PRIME tmod INTRON tmod
2R	17322769	2R_17322769_SNP [dm3] 2R_21435264_SNP [dm6]	C	A	5.038e^-4	1	INTRON Sdc
3R	3001502	3R_3001502_SNP [dm3] 3R_7175780_SNP [dm6]	T	A	5.047e^-4	1	INTRON sas	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3983618	3L_3983618_SNP [dm3] 3L_3983618_SNP [dm6]	T	C	5.049e^-4	1	UPSTREAM scrt INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12350743	3L_12350743_SNP [dm3] 3L_12357643_SNP [dm6]	C	A	5.060e^-4	1	INTERGENIC
3R	14069334	3R_14069334_SNP [dm3] 3R_18243612_SNP [dm6]	C	A	5.065e^-4	1	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
2L	18062465	2L_18062465_SNP [dm3] 2L_18062465_SNP [dm6]	G	A	5.070e^-4	1	SYNONYMOUS_CODING rdo
2R	18081835	2R_18081835_SNP [dm3] 2R_22194330_SNP [dm6]	T	C	5.076e^-4	1	INTRON Swim
X	3215008	X_3215008_SNP [dm3] X_3320975_SNP [dm6]	T	A	5.088e^-4	1	INTRON dnc & 1 other
2R	12139960	2R_12139960_SNP [dm3] 2R_16252455_SNP [dm6]	A	T	5.094e^-4	1	INTRON CngA
X	8959597	X_8959597_SNP [dm3] X_9065564_SNP [dm6]	G	T	5.095e^-4	1	INTRON CG15365
3R	6670435	3R_6670435_SNP [dm3] 3R_10844713_SNP [dm6]	G	C	5.098e^-4	1	INTRON Cad86C
2L	3219080	2L_3219080_SNP [dm3] 2L_3219080_SNP [dm6]	A	G	5.104e^-4	1	INTERGENIC
2L	5958659	2L_5958659_SNP [dm3] 2L_5958659_SNP [dm6]	T	C	5.114e^-4	1	UPSTREAM Vm26Ac DOWNSTREAM Vm26Aa INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8288562	3R_8288562_SNP [dm3] 3R_12462840_SNP [dm6]	C	T	5.117e^-4	1	DOWNSTREAM CG12267 INTRON CG5608	TF binding site mE1_TFBS_inv
3L	3916871	3L_3916871_SNP [dm3] 3L_3916871_SNP [dm6]	A	G	5.124e^-4	1	INTRON Eip63F-1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	12084745	X_12084745_SNP [dm3] X_12190712_SNP [dm6]	C	T	5.128e^-4	1	INTRON Ten-a
2R	17339703	2R_17339703_SNP [dm3] 2R_21452198_SNP [dm6]	C	A	5.137e^-4	1	INTRON Sdc
2L	14026069	2L_14026069_SNP [dm3] 2L_14026069_SNP [dm6]	C	G	5.138e^-4	1	UPSTREAM CG4500 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2R	16606613	2R_16606613_SNP [dm3] 2R_20719108_SNP [dm6]	A	G	5.140e^-4	1	INTRON dpr	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	2331955	2L_2331955_SNP [dm3] 2L_2331955_SNP [dm6]	T	C	5.144e^-4	1	INTRON CG9967 & 1 other
3R	17469903	3R_17469903_SNP [dm3] 3R_21644181_SNP [dm6]	A	T	5.148e^-4	1	INTRON E2f	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	4217663	3L_4217663_SNP [dm3] 3L_4217663_SNP [dm6]	C	T	5.152e^-4	1	NON_SYNONYMOUS_CODING CG43367
2R	14641372	2R_14641372_SNP [dm3] 2R_18753867_SNP [dm6]	T	A	5.154e^-4	1	UTR_3_PRIME Hs3st-A
2L	11047644	2L_11047644_SNP [dm3] 2L_11047644_SNP [dm6]	A	G	5.167e^-4	1	INTRON Samuel
2R	16436488	2R_16436488_SNP [dm3] 2R_20548983_SNP [dm6]	A	G	5.170e^-4	1	UPSTREAM Obp57e DOWNSTREAM Cpr57A INTRON Cpr57A & 1 other	regulatory region REDfly_CRMs
2L	4591234	2L_4591234_SNP [dm3] 2L_4591234_SNP [dm6]	G	T	5.176e^-4	1	INTRON dp
3L	2663269	3L_2663269_SNP [dm3] 3L_2663269_SNP [dm6]	C	A	5.176e^-4	1	SPLICE_SITE_REGION CG33234 SYNONYMOUS_CODING CG33234 INTRON Fife
3R	24257872	3R_24257872_SNP [dm3] 3R_28432150_SNP [dm6]	T	C	5.185e^-4	1	INTRON beat-VI
X	5204852	X_5204852_DEL [dm3] X_5310819_DEL [dm6]	TGAGT	T	5.190e^-4	1	UTR_3_PRIME TrxT DOWNSTREAM snf
3L	3077144	3L_3077144_SNP [dm3] 3L_3077144_SNP [dm6]	C	T	5.206e^-4	1	UPSTREAM CG11486 INTRON CG11486	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	10291869	3R_10291869_SNP [dm3] 3R_14466147_SNP [dm6]	G	A	5.206e^-4	1	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16829881	X_16829881_SNP [dm3] X_16935848_SNP [dm6]	G	A	5.207e^-4	1	NON_SYNONYMOUS_CODING CG4928 INTRON CG4928
3L	1023584	3L_1023584_SNP [dm3] 3L_1023584_SNP [dm6]	T	A	5.207e^-4	1	UPSTREAM trio INTRON trio
3L	18469185	3L_18469185_SNP [dm3] 3L_18476085_SNP [dm6]	G	T	5.232e^-4	1	DOWNSTREAM CR44672 INTERGENIC
2R	16047171	2R_16047171_SNP [dm3] 2R_20159666_SNP [dm6]	A	T	5.234e^-4	1	INTERGENIC
3R	12544459	3R_12544459_SNP [dm3] 3R_16718737_SNP [dm6]	T	A	5.234e^-4	1	INTRON Ubx	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	17423372	3L_17423372_SNP [dm3] 3L_17430272_SNP [dm6]	C	T	5.242e^-4	1	SYNONYMOUS_CODING CG32174 UTR_3_PRIME frc	TF binding site BDTNP1_TFBS_dl
X	12653330	X_12653330_SNP [dm3] X_12759297_SNP [dm6]	G	T	5.257e^-4	1	INTRON ade5
X	19055737	X_19055737_SNP [dm3] X_19161704_SNP [dm6]	C	T	5.258e^-4	1	INTRON RhoGAP18B	TF binding site mE1_TFBS_inv
3R	16868852	3R_16868852_SNP [dm3] 3R_21043130_SNP [dm6]	C	A	5.259e^-4	1	UPSTREAM Dhc93AB & 1 other INTERGENIC
2L	11026382	2L_11026382_SNP [dm3] 2L_11026382_SNP [dm6]	C	T	5.260e^-4	1	INTRON Samuel
X	21890336	X_21890336_SNP [dm3] X_22488500_SNP [dm6]	G	A	5.264e^-4	1	INTRON l_1_G0196 EXON CR43493
3R	19470378	3R_19470378_SNP [dm3] 3R_23644656_SNP [dm6]	G	A	5.280e^-4	1	INTRON CG31145
2L	7146071	2L_7146071_DEL [dm3] 2L_7146071_DEL [dm6]	TTC	T	5.280e^-4	1	DOWNSTREAM CR44612 INTRON Pvf3
3L	5825806	3L_5825806_SNP [dm3] 3L_5832706_SNP [dm6]	A	G	5.287e^-4	1	INTRON vn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5789417	2L_5789417_SNP [dm3] 2L_5789417_SNP [dm6]	A	G	5.307e^-4	1	INTRON CG9171	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1540042	2L_1540042_SNP [dm3] 2L_1540042_SNP [dm6]	A	G	5.311e^-4	1	INTERGENIC
2L	2656427	2L_2656427_SNP [dm3] 2L_2656427_SNP [dm6]	A	C	5.314e^-4	1	UTR_3_PRIME Prosbeta4R2 DOWNSTREAM Or23a & 1 other
2L	2656431	2L_2656431_SNP [dm3] 2L_2656431_SNP [dm6]	G	A	5.314e^-4	1	UTR_3_PRIME Prosbeta4R2 DOWNSTREAM Or23a & 1 other
2L	10435540	2L_10435540_SNP [dm3] 2L_10435540_SNP [dm6]	T	C	5.316e^-4	1	UTR_5_PRIME CG5337 UPSTREAM holn1
2L	4587438	2L_4587438_SNP [dm3] 2L_4587438_SNP [dm6]	G	C	5.320e^-4	1	INTRON dp	TF binding site mE1_TFBS_HSA
3L	15692801	3L_15692801_SNP [dm3] 3L_15699701_SNP [dm6]	T	C	5.328e^-4	1	START_GAINED comm2 UTR_5_PRIME comm2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	720428	2L_720428_SNP [dm3] 2L_720428_SNP [dm6]	T	A	5.332e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	22407641	X_22407641_SNP [dm3] X_23005805_SNP [dm6]	C	T	5.333e^-4	1	INTERGENIC	transposable element FlyBase
3L	23945762	3L_23945762_SNP [dm3] 3L_23952662_SNP [dm6]	G	A	5.338e^-4	1	INTRON CG40470
X	8946737	X_8946737_SNP [dm3] X_9052704_SNP [dm6]	A	G	5.338e^-4	1	SYNONYMOUS_CODING CG42388	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20484697	X_20484697_SNP [dm3] X_20613670_SNP [dm6]	C	T	5.349e^-4	1	INTRON RunxA
X	5495247	X_5495247_SNP [dm3] X_5601214_SNP [dm6]	A	G	5.350e^-4	1	INTRON Vsx1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	2401610	2R_2401610_SNP [dm3] 2R_6514105_SNP [dm6]	A	T	5.352e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	8947840	X_8947840_SNP [dm3] X_9053807_SNP [dm6]	A	T	5.356e^-4	1	UTR_3_PRIME CG42388 DOWNSTREAM CG42388 & 1 other
2L	20882482	2L_20882482_SNP [dm3] 2L_20882482_SNP [dm6]	A	G	5.356e^-4	1	INTRON sky & 1 other
2L	13917200	2L_13917200_SNP [dm3] 2L_13917200_SNP [dm6]	G	A	5.358e^-4	1	SYNONYMOUS_CODING Ance-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	6394996	2L_6394996_SNP [dm3] 2L_6394996_SNP [dm6]	C	T	5.372e^-4	1	DOWNSTREAM CG42369 INTRON CG42368
2R	1733795	2R_1733795_SNP [dm3] 2R_5846290_SNP [dm6]	T	C	5.386e^-4	1	INTRON dpr12
2L	4745636	2L_4745636_SNP [dm3] 2L_4745636_SNP [dm6]	T	A	5.392e^-4	1	INTRON CG15630
3L	4085201	3L_4085201_SNP [dm3] 3L_4085201_SNP [dm6]	G	T	5.402e^-4	1	INTRON Gad1
2R	16983240	2R_16983240_SNP [dm3] 2R_21095735_SNP [dm6]	C	A	5.409e^-4	1	DOWNSTREAM CG4038 INTRON CG34396
2R	10792054	2R_10792054_SNP [dm3] 2R_14904549_SNP [dm6]	G	A	5.417e^-4	1	SYNONYMOUS_CODING CG10249 UPSTREAM CG10249	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12866498	X_12866498_SNP [dm3] X_12972465_SNP [dm6]	G	A	5.418e^-4	1	NON_SYNONYMOUS_CODING CG15721 INTRON CR43636
2R	16565821	2R_16565821_SNP [dm3] 2R_20678316_SNP [dm6]	A	T	5.419e^-4	1	INTERGENIC
X	11657330	X_11657330_SNP [dm3] X_11763297_SNP [dm6]	C	T	5.419e^-4	1	DOWNSTREAM CG9360 INTRON m
2L	1542646	2L_1542646_SNP [dm3] 2L_1542646_SNP [dm6]	C	T	5.420e^-4	1	INTERGENIC
3L	3916945	3L_3916945_SNP [dm3] 3L_3916945_SNP [dm6]	G	C	5.420e^-4	1	INTRON Eip63F-1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12173677	2L_12173677_SNP [dm3] 2L_12173677_SNP [dm6]	G	C	5.422e^-4	1	UTR_3_PRIME crok DOWNSTREAM CR43356	TF binding site BDTNP1_TFBS_hb
2R	17653000	2R_17653000_SNP [dm3] 2R_21765495_SNP [dm6]	T	C	5.427e^-4	1	UTR_5_PRIME CG30395 UPSTREAM CR43984 DOWNSTREAM CG43982
2L	7137770	2L_7137770_SNP [dm3] 2L_7137770_SNP [dm6]	A	G	5.427e^-4	1	INTRON Pvf3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11074244	2L_11074244_INS [dm3] 2L_11074244_INS [dm6]	T	TT	5.430e^-4	1	DOWNSTREAM CR45725 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	9217212	3R_9217212_SNP [dm3] 3R_13391490_SNP [dm6]	T	C	5.431e^-4	1	INTRON CCHa2
3R	14071201	3R_14071201_SNP [dm3] 3R_18245479_SNP [dm6]	G	A	5.432e^-4	1	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11236588	3L_11236588_SNP [dm3] 3L_11243488_SNP [dm6]	C	T	5.436e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8990182	2L_8990182_SNP [dm3] 2L_8990182_SNP [dm6]	C	T	5.437e^-4	1	UPSTREAM rost INTERGENIC
2R	17992459	2R_17992459_SNP [dm3] 2R_22104954_SNP [dm6]	G	A	5.441e^-4	1	SYNONYMOUS_CODING CG6613
3R	10292211	3R_10292211_SNP [dm3] 3R_14466489_SNP [dm6]	G	C	5.444e^-4	1	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18478001	2R_18478001_SNP [dm3] 2R_22590496_SNP [dm6]	G	T	5.456e^-4	1	INTRON dnr1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	8558317	2L_8558317_SNP [dm3] 2L_8558317_SNP [dm6]	A	C	5.492e^-4	1	INTRON Sema-1a	TF binding site mE1_TFBS_cad
2L	11074057	2L_11074057_SNP [dm3] 2L_11074057_SNP [dm6]	T	A	5.496e^-4	1	DOWNSTREAM CR45725 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14988835	2R_14988835_SNP [dm3] 2R_19101330_SNP [dm6]	A	G	5.505e^-4	1	INTRON 5-HT1A
X	14397757	X_14397757_SNP [dm3] X_14503724_SNP [dm6]	A	T	5.506e^-4	1	INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.101e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	4.8325	0.0893

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1789 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	4513330	2L_4513330_SNP [dm3] 2L_4513330_SNP [dm6]	T	A	4.906e^-7	0.672	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17834431	2R_17834431_SNP [dm3] 2R_21946926_SNP [dm6]	T	C	7.168e^-7	0.672	DOWNSTREAM Fili INTERGENIC
3L	17815024	3L_17815024_SNP [dm3] 3L_17821924_SNP [dm6]	G	A	4.081e^-6	1	SYNONYMOUS_CODING Ir75c
2L	12600320	2L_12600320_SNP [dm3] 2L_12600320_SNP [dm6]	A	T	4.263e^-6	1	INTRON nub
3R	23856487	3R_23856487_SNP [dm3] 3R_28030765_SNP [dm6]	C	T	4.772e^-6	1	SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18394766	X_18394766_SNP [dm3] X_18500733_SNP [dm6]	G	C	4.964e^-6	1	NON_SYNONYMOUS_CODING Rad51D UPSTREAM GalNAc-T2 DOWNSTREAM Wnt5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	1751054	2R_1751054_DEL [dm3] 2R_5863549_DEL [dm6]	GACATACAATGG...	G	5.425e^-6	1	INTERGENIC
2R	1407715	2R_1407715_SNP [dm3] 2R_5520210_SNP [dm6]	C	T	5.701e^-6	1	INTRON CG30438	transposable element FlyBase
3R	17020888	3R_17020888_SNP [dm3] 3R_21195166_SNP [dm6]	C	A	6.923e^-6	1	INTRON SNF4Agamma
2L	19732070	2L_19732070_SNP [dm3] 2L_19732070_SNP [dm6]	T	A	7.003e^-6	1	DOWNSTREAM CG10462 & 1 other INTERGENIC
3L	3006118	3L_3006118_SNP [dm3] 3L_3006118_SNP [dm6]	G	A	7.028e^-6	1	INTRON FMRFaR
3L	17815027	3L_17815027_SNP [dm3] 3L_17821927_SNP [dm6]	A	G	8.029e^-6	1	SYNONYMOUS_CODING Ir75c
2L	7087064	2L_7087064_SNP [dm3] 2L_7087064_SNP [dm6]	A	G	1.031e^-5	1	INTERGENIC
2L	6573085	2L_6573085_SNP [dm3] 2L_6573085_SNP [dm6]	A	G	1.099e^-5	1	INTRON CG11319
X	3214988	X_3214988_DEL [dm3] X_3320955_DEL [dm6]	ATAT	A	1.195e^-5	1	INTRON dnc & 1 other
3L	2626748	3L_2626748_SNP [dm3] 3L_2626748_SNP [dm6]	C	T	1.227e^-5	1	INTRON Pxn	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	2523826	2R_2523826_SNP [dm3] 2R_6636321_SNP [dm6]	T	A	1.274e^-5	1	UPSTREAM Bap170 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	4217663	3L_4217663_SNP [dm3] 3L_4217663_SNP [dm6]	C	T	1.276e^-5	1	NON_SYNONYMOUS_CODING CG43367
2L	19732103	2L_19732103_SNP [dm3] 2L_19732103_SNP [dm6]	G	A	1.306e^-5	1	UTR_3_PRIME CG10462 DOWNSTREAM Lar
3L	4218593	3L_4218593_SNP [dm3] 3L_4218593_SNP [dm6]	G	A	1.309e^-5	1	SYNONYMOUS_CODING CG43367	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25186388	3R_25186388_SNP [dm3] 3R_29360666_SNP [dm6]	A	T	1.348e^-5	1	INTERGENIC
X	12675868	X_12675868_SNP [dm3] X_12781835_SNP [dm6]	G	A	1.432e^-5	1	INTRON CG32647
3R	16580282	3R_16580282_SNP [dm3] 3R_20754560_SNP [dm6]	G	C	1.490e^-5	1	DOWNSTREAM CG42322 INTRON CG42322
3L	12837093	3L_12837093_SNP [dm3] 3L_12843993_SNP [dm6]	A	T	1.491e^-5	1	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
3L	12837095	3L_12837095_INS [dm3] 3L_12843995_INS [dm6]	T	TAATGTT	1.491e^-5	1	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
2L	5780103	2L_5780103_SNP [dm3] 2L_5780103_SNP [dm6]	C	G	1.661e^-5	1	INTRON CG9171	TF binding site BDTNP1_TFBS_twi
2L	7088396	2L_7088396_SNP [dm3] 2L_7088396_SNP [dm6]	A	T	1.681e^-5	1	INTERGENIC
3L	12836994	3L_12836994_SNP [dm3] 3L_12843894_SNP [dm6]	A	T	1.754e^-5	1	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
3L	837693	3L_837693_SNP [dm3] 3L_837693_SNP [dm6]	A	C	1.881e^-5	1	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	17811196	3L_17811196_SNP [dm3] 3L_17818096_SNP [dm6]	G	A	1.906e^-5	1	NON_SYNONYMOUS_CODING Ir75b UPSTREAM Ir75a
2L	4513415	2L_4513415_SNP [dm3] 2L_4513415_SNP [dm6]	G	T	1.917e^-5	1	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12837138	3L_12837138_SNP [dm3] 3L_12844038_SNP [dm6]	C	A	1.931e^-5	1	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
3R	14071070	3R_14071070_DEL [dm3] 3R_18245348_DEL [dm6]	CGTCCCAATATTTC...	C	1.974e^-5	1	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	10912444	2L_10912444_SNP [dm3] 2L_10912444_SNP [dm6]	T	A	2.029e^-5	1	INTERGENIC
X	3215026	X_3215026_SNP [dm3] X_3320993_SNP [dm6]	G	A	2.089e^-5	1	INTRON dnc & 1 other
3L	3533304	3L_3533304_SNP [dm3] 3L_3533304_SNP [dm6]	C	T	2.103e^-5	1	INTRON Eip63E
2R	18586714	2R_18586714_SNP [dm3] 2R_22699209_SNP [dm6]	C	G	2.132e^-5	1	SYNONYMOUS_CODING robo	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12155772	2L_12155772_SNP [dm3] 2L_12155772_SNP [dm6]	G	A	2.163e^-5	1	INTRON CG31760
3L	17811191	3L_17811191_SNP [dm3] 3L_17818091_SNP [dm6]	G	A	2.186e^-5	1	SYNONYMOUS_CODING Ir75b UPSTREAM Ir75a
3L	10345760	3L_10345760_SNP [dm3] 3L_10352660_SNP [dm6]	C	A	2.557e^-5	1	INTRON CR44327
2L	19732109	2L_19732109_SNP [dm3] 2L_19732109_SNP [dm6]	A	C	2.726e^-5	1	UTR_3_PRIME CG10462 DOWNSTREAM Lar
2R	2522211	2R_2522211_SNP [dm3] 2R_6634706_SNP [dm6]	C	A	2.828e^-5	1	SYNONYMOUS_CODING Trap1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	839225	3L_839225_SNP [dm3] 3L_839225_SNP [dm6]	C	T	2.844e^-5	1	UTR_3_PRIME CG13887 DOWNSTREAM CG13902 INTRON CG13887	TF binding site mE1_TFBS_inv
3L	16093381	3L_16093381_SNP [dm3] 3L_16100281_SNP [dm6]	T	A	2.865e^-5	1	UTR_5_PRIME CG5414 DOWNSTREAM ms_3_72Dt
X	12717281	X_12717281_DEL [dm3] X_12823248_DEL [dm6]	TTGCCTTATTGCTTTCGCTT...	T	2.897e^-5	1	INTRON Pde9
X	3214980	X_3214980_SNP [dm3] X_3320947_SNP [dm6]	A	T	2.970e^-5	1	INTRON dnc & 1 other
3L	10344333	3L_10344333_SNP [dm3] 3L_10351233_SNP [dm6]	A	T	2.996e^-5	1	INTRON CR44327
2R	17223207	2R_17223207_SNP [dm3] 2R_21335702_SNP [dm6]	A	T	2.996e^-5	1	SYNONYMOUS_CODING dom DOWNSTREAM snoRNA:Me28S-G2596 & 1 other INTRON dom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19732106	2L_19732106_SNP [dm3] 2L_19732106_SNP [dm6]	G	A	3.058e^-5	1	UTR_3_PRIME CG10462 DOWNSTREAM Lar
3R	23856568	3R_23856568_SNP [dm3] 3R_28030846_SNP [dm6]	T	G	3.129e^-5	1	NON_SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23856711	3R_23856711_SNP [dm3] 3R_28030989_SNP [dm6]	G	C	3.143e^-5	1	NON_SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12211278	2L_12211278_SNP [dm3] 2L_12211278_SNP [dm6]	T	C	3.155e^-5	1	INTRON aret
3L	6387950	3L_6387950_SNP [dm3] 3L_6394850_SNP [dm6]	C	G	3.162e^-5	1	INTERGENIC
X	3215050	X_3215050_SNP [dm3] X_3321017_SNP [dm6]	A	T	3.244e^-5	1	INTRON dnc & 1 other
2L	7088810	2L_7088810_SNP [dm3] 2L_7088810_SNP [dm6]	C	A	3.273e^-5	1	INTERGENIC
2L	5814166	2L_5814166_SNP [dm3] 2L_5814166_SNP [dm6]	C	A	3.301e^-5	1	INTERGENIC
2L	17012308	2L_17012308_SNP [dm3] 2L_17012308_SNP [dm6]	C	T	3.359e^-5	1	SYNONYMOUS_CODING CG6304	TF binding site mE1_TFBS_HSA
3L	12836907	3L_12836907_SNP [dm3] 3L_12843807_SNP [dm6]	T	C	3.456e^-5	1	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
3L	3924544	3L_3924544_DEL [dm3] 3L_3924544_DEL [dm6]	GCGAATCAG	G	3.458e^-5	1	INTRON Eip63F-1
X	12869261	X_12869261_SNP [dm3] X_12975228_SNP [dm6]	A	T	3.492e^-5	1	NON_SYNONYMOUS_CODING CG12716 UPSTREAM CR43152
2R	1733786	2R_1733786_SNP [dm3] 2R_5846281_SNP [dm6]	C	A	3.508e^-5	1	INTRON dpr12
3L	3058843	3L_3058843_DEL [dm3] 3L_3058843_DEL [dm6]	AA	A	3.616e^-5	1	INTRON CG32486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4417618	2L_4417618_SNP [dm3] 2L_4417618_SNP [dm6]	T	A	3.714e^-5	1	INTRON CG15431	TF binding site mE1_TFBS_chinmo
2L	10660153	2L_10660153_DEL [dm3] 2L_10660153_DEL [dm6]	TAAGT	T	3.729e^-5	1	INTERGENIC
2L	5814084	2L_5814084_SNP [dm3] 2L_5814084_SNP [dm6]	C	T	3.841e^-5	1	INTERGENIC
2L	20440732	2L_20440732_INS [dm3] 2L_20440732_INS [dm6]	T	TCT	3.972e^-5	1	INTRON CG31688
2R	18232088	2R_18232088_SNP [dm3] 2R_22344583_SNP [dm6]	T	C	4.075e^-5	1	INTRON Liprin-gamma
2L	19732053	2L_19732053_SNP [dm3] 2L_19732053_SNP [dm6]	C	T	4.126e^-5	1	UTR_3_PRIME Lar DOWNSTREAM CG10462 & 1 other
3R	22684457	3R_22684457_SNP [dm3] 3R_26858735_SNP [dm6]	A	T	4.176e^-5	1	INTRON Lerp	TF binding site mE1_TFBS_chinmo
3R	17020875	3R_17020875_SNP [dm3] 3R_21195153_SNP [dm6]	A	T	4.247e^-5	1	INTRON SNF4Agamma
2L	2685316	2L_2685316_SNP [dm3] 2L_2685316_SNP [dm6]	A	C	4.258e^-5	1	INTRON CG31690
3R	16580300	3R_16580300_SNP [dm3] 3R_20754578_SNP [dm6]	C	T	4.336e^-5	1	DOWNSTREAM CG42322 INTRON CG42322
2R	15380915	2R_15380915_SNP [dm3] 2R_19493410_SNP [dm6]	G	A	4.340e^-5	1	SYNONYMOUS_CODING Rep DOWNSTREAM hpo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	931623	2L_931623_SNP [dm3] 2L_931623_SNP [dm6]	G	C	4.467e^-5	1	INTRON CG4341	TF binding site mE1_TFBS_chinmo
3R	23856601	3R_23856601_SNP [dm3] 3R_28030879_SNP [dm6]	G	A	4.670e^-5	1	SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17215904	2R_17215904_SNP [dm3] 2R_21328399_SNP [dm6]	G	C	4.773e^-5	1	DOWNSTREAM snoRNA:Me28S-A2589b INTRON dom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3479500	2L_3479500_SNP [dm3] 2L_3479500_SNP [dm6]	G	T	4.816e^-5	1	UTR_3_PRIME Thor	TF binding site BDTNP1_TFBS_dl
3L	8365377	3L_8365377_SNP [dm3] 3L_8372277_SNP [dm6]	T	C	4.834e^-5	1	UPSTREAM ImpE1 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2542931	2R_2542931_SNP [dm3] 2R_6655426_SNP [dm6]	A	T	4.862e^-5	1	DOWNSTREAM geminin & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	12844918	3R_12844918_DEL [dm3] 3R_17019196_DEL [dm6]	GTG	G	4.931e^-5	1	UTR_3_PRIME AdSL INTRON Pxd
2L	4707969	2L_4707969_SNP [dm3] 2L_4707969_SNP [dm6]	G	T	5.019e^-5	1	INTRON CG34351
X	18394812	X_18394812_SNP [dm3] X_18500779_SNP [dm6]	T	C	5.052e^-5	1	SYNONYMOUS_CODING Rad51D UPSTREAM GalNAc-T2 DOWNSTREAM Wnt5	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	24787842	3R_24787842_SNP [dm3] 3R_28962120_SNP [dm6]	T	A	5.079e^-5	1	INTRON CG14521
2R	15467220	2R_15467220_DEL [dm3] 2R_19579715_DEL [dm6]	AA	A	5.091e^-5	1	INTRON sm
3R	22684478	3R_22684478_SNP [dm3] 3R_26858756_SNP [dm6]	A	T	5.216e^-5	1	INTRON Lerp	TF binding site mE1_TFBS_chinmo
2R	5974807	2R_5974807_SNP [dm3] 2R_10087302_SNP [dm6]	T	C	5.252e^-5	1	UPSTREAM CG2269 & 1 other INTRON CG2269
3R	18192318	3R_18192318_SNP [dm3] 3R_22366596_SNP [dm6]	C	G	5.261e^-5	1	SYNONYMOUS_CODING CG5380 UPSTREAM CG5382 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	4582520	3R_4582520_SNP [dm3] 3R_8756798_SNP [dm6]	C	G	5.357e^-5	1	DOWNSTREAM CR44228 INTRON CG11768 & 1 other
2R	2516326	2R_2516326_SNP [dm3] 2R_6628821_SNP [dm6]	C	A	5.500e^-5	1	INTRON Vha16-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6381146	3L_6381146_SNP [dm3] 3L_6388046_SNP [dm6]	T	A	5.511e^-5	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	10839262	X_10839262_SNP [dm3] X_10945229_SNP [dm6]	A	G	5.512e^-5	1	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
3L	10972275	3L_10972275_SNP [dm3] 3L_10979175_SNP [dm6]	G	C	5.544e^-5	1	UPSTREAM CR45745 INTERGENIC
3R	18050637	3R_18050637_SNP [dm3] 3R_22224915_SNP [dm6]	T	A	5.621e^-5	1	INTRON SKIP
3L	10980553	3L_10980553_SNP [dm3] 3L_10987453_SNP [dm6]	A	T	5.638e^-5	1	INTRON klu
3L	3049934	3L_3049934_SNP [dm3] 3L_3049934_SNP [dm6]	G	T	5.646e^-5	1	UTR_3_PRIME Sk2 UPSTREAM CG32485	TF binding site mE1_TFBS_cad
3L	12837097	3L_12837097_SNP [dm3] 3L_12843997_SNP [dm6]	C	G	5.777e^-5	1	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
X	10500322	X_10500322_DEL [dm3] X_10606289_DEL [dm6]	AGCAAGTTTTCGAATTTTCA...	A	5.947e^-5	1	INTRON CG43347
2L	10558264	2L_10558264_SNP [dm3] 2L_10558264_SNP [dm6]	A	T	5.989e^-5	1	INTRON Trim9	TF binding site mE1_TFBS_inv
X	9224651	X_9224651_INS [dm3] X_9330618_INS [dm6]	C	CATTCCTCAATTAC...	6.173e^-5	1	UPSTREAM CG34450 DOWNSTREAM CG34449 INTRON CG34449
3R	4615980	3R_4615980_SNP [dm3] 3R_8790258_SNP [dm6]	A	C	6.206e^-5	1	INTRON Pif1B & 1 other
X	10628293	X_10628293_SNP [dm3] X_10734260_SNP [dm6]	G	C	6.227e^-5	1	INTRON CG32676
3L	7721784	3L_7721784_SNP [dm3] 3L_7728684_SNP [dm6]	G	T	6.249e^-5	1	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
3L	2882606	3L_2882606_SNP [dm3] 3L_2882606_SNP [dm6]	T	A	6.294e^-5	1	UPSTREAM CR44531 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	17020864	3R_17020864_SNP [dm3] 3R_21195142_SNP [dm6]	T	C	6.346e^-5	1	INTRON SNF4Agamma
2L	12160627	2L_12160627_SNP [dm3] 2L_12160627_SNP [dm6]	T	G	6.490e^-5	1	INTRON CG31760	TF binding site mE1_TFBS_HSA
3L	10980531	3L_10980531_SNP [dm3] 3L_10987431_SNP [dm6]	G	C	6.535e^-5	1	INTRON klu
2R	19835495	2R_19835495_SNP [dm3] 2R_23947972_SNP [dm6]	A	G	6.542e^-5	1	SYNONYMOUS_CODING CG13565 INTRON CG13565
2L	2684915	2L_2684915_SNP [dm3] 2L_2684915_SNP [dm6]	C	G	6.546e^-5	1	INTRON CG31690
2L	5063324	2L_5063324_SNP [dm3] 2L_5063324_SNP [dm6]	T	G	6.601e^-5	1	INTRON qtc EXON CR43820	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2493141	3L_2493141_SNP [dm3] 3L_2493141_SNP [dm6]	T	C	6.629e^-5	1	DOWNSTREAM CG1146 INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	2520190	2R_2520190_SNP [dm3] 2R_6632685_SNP [dm6]	C	A	6.646e^-5	1	UPSTREAM Vha16-1 DOWNSTREAM Trap1 INTRON Vha16-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_zfh1
3R	12844916	3R_12844916_SNP [dm3] 3R_17019194_SNP [dm6]	C	G	6.727e^-5	1	UTR_3_PRIME AdSL INTRON Pxd
3L	10410693	3L_10410693_SNP [dm3] 3L_10417593_SNP [dm6]	G	A	6.735e^-5	1	INTERGENIC
3R	14350134	3R_14350134_SNP [dm3] 3R_18524412_SNP [dm6]	A	T	6.828e^-5	1	INTRON fru
X	12624503	X_12624503_SNP [dm3] X_12730470_SNP [dm6]	T	C	6.864e^-5	1	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl
2L	7087068	2L_7087068_SNP [dm3] 2L_7087068_SNP [dm6]	G	T	6.870e^-5	1	INTERGENIC
3L	12837043	3L_12837043_SNP [dm3] 3L_12843943_SNP [dm6]	C	G	6.913e^-5	1	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
2L	16406812	2L_16406812_SNP [dm3] 2L_16406812_SNP [dm6]	T	C	6.968e^-5	1	UPSTREAM CG5888 INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	669526	3L_669526_SNP [dm3] 3L_669526_SNP [dm6]	T	G	7.183e^-5	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	3215008	X_3215008_SNP [dm3] X_3320975_SNP [dm6]	T	A	7.210e^-5	1	INTRON dnc & 1 other
3L	7721793	3L_7721793_SNP [dm3] 3L_7728693_SNP [dm6]	A	T	7.318e^-5	1	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
3L	7721787	3L_7721787_SNP [dm3] 3L_7728687_SNP [dm6]	A	G	7.387e^-5	1	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
3L	12837074	3L_12837074_INS [dm3] 3L_12843974_INS [dm6]	T	AATGTA	7.476e^-5	1	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
3R	4466963	3R_4466963_DEL [dm3] 3R_8641241_DEL [dm6]	ATA	A	7.482e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	3111095	2L_3111095_SNP [dm3] 2L_3111095_SNP [dm6]	C	G	7.698e^-5	1	DOWNSTREAM PpD6 INTRON toc
2L	16878414	2L_16878414_SNP [dm3] 2L_16878414_SNP [dm6]	T	C	7.763e^-5	1	UTR_3_PRIME CG32832 DOWNSTREAM CG32832 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2332302	2L_2332302_SNP [dm3] 2L_2332302_SNP [dm6]	A	G	7.778e^-5	1	INTRON CG9967 & 1 other
2L	22962981	2L_22962981_SNP [dm3] 2L_23070249_SNP [dm6]	C	T	7.780e^-5	1	EXON CR43242	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	10838353	X_10838353_SNP [dm3] X_10944320_SNP [dm6]	T	C	7.844e^-5	1	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
2L	4355538	2L_4355538_SNP [dm3] 2L_4355538_SNP [dm6]	A	C	7.849e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	16533617	3L_16533617_SNP [dm3] 3L_16540517_SNP [dm6]	A	G	7.889e^-5	1	INTRON CG43373
3L	2882607	3L_2882607_SNP [dm3] 3L_2882607_SNP [dm6]	G	T	7.988e^-5	1	UPSTREAM CR44531 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	18935521	2R_18935521_SNP [dm3] 2R_23047998_SNP [dm6]	C	T	7.997e^-5	1	SYNONYMOUS_CODING twi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15517509	3R_15517509_SNP [dm3] 3R_19691787_SNP [dm6]	A	G	8.118e^-5	1	INTRON Naam
3L	5874296	3L_5874296_SNP [dm3] 3L_5881196_SNP [dm6]	T	G	8.151e^-5	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12837142	3L_12837142_DEL [dm3] 3L_12844042_DEL [dm6]	TAAAGCTTGT	T	8.162e^-5	1	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC
2L	10912514	2L_10912514_DEL [dm3] 2L_10912514_DEL [dm6]	TCCTAAAGAACAG...	T	8.318e^-5	1	INTERGENIC
X	3215014	X_3215014_SNP [dm3] X_3320981_SNP [dm6]	T	G	8.337e^-5	1	INTRON dnc & 1 other
2L	17980099	2L_17980099_SNP [dm3] 2L_17980099_SNP [dm6]	A	T	8.451e^-5	1	SYNONYMOUS_CODING btv
2L	10562475	2L_10562475_SNP [dm3] 2L_10562475_SNP [dm6]	T	C	8.535e^-5	1	INTRON Trim9
2L	2329039	2L_2329039_SNP [dm3] 2L_2329039_SNP [dm6]	T	A	8.558e^-5	1	INTRON CG9967 & 1 other
2R	18757646	2R_18757646_SNP [dm3] 2R_22870123_SNP [dm6]	C	T	8.586e^-5	1	SYNONYMOUS_CODING fd59A	TF binding site mE1_TFBS_cad
X	14628581	X_14628581_SNP [dm3] X_14734548_SNP [dm6]	T	C	8.626e^-5	1	INTRON NetB
2R	15383714	2R_15383714_SNP [dm3] 2R_19496209_SNP [dm6]	G	A	8.674e^-5	1	SYNONYMOUS_CODING hpo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10912511	2L_10912511_SNP [dm3] 2L_10912511_SNP [dm6]	C	G	8.726e^-5	1	INTERGENIC
2L	17980009	2L_17980009_SNP [dm3] 2L_17980009_SNP [dm6]	G	A	8.916e^-5	1	SYNONYMOUS_CODING btv
2L	22713854	2L_22713854_SNP [dm3] 2L_22821122_SNP [dm6]	G	C	8.951e^-5	1	INTERGENIC
2R	2519731	2R_2519731_SNP [dm3] 2R_6632226_SNP [dm6]	A	G	9.013e^-5	1	UTR_5_PRIME Vha16-1 INTRON Vha16-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_zfh1
2R	12331701	2R_12331701_SNP [dm3] 2R_16444196_SNP [dm6]	G	A	9.019e^-5	1	INTRON CG4409
2L	4418320	2L_4418320_SNP [dm3] 2L_4418320_SNP [dm6]	T	A	9.057e^-5	1	DOWNSTREAM tRNA:CR31963 INTRON CG15431
2R	1747805	2R_1747805_SNP [dm3] 2R_5860300_SNP [dm6]	C	T	9.122e^-5	1	UTR_3_PRIME dpr12 DOWNSTREAM dpr12
2L	3441779	2L_3441779_SNP [dm3] 2L_3441779_SNP [dm6]	A	G	9.489e^-5	1	INTERGENIC
2L	7190164	2L_7190164_SNP [dm3] 2L_7190164_SNP [dm6]	A	G	9.575e^-5	1	UPSTREAM CG4496 DOWNSTREAM CG4497 INTERGENIC
2R	15381468	2R_15381468_SNP [dm3] 2R_19493963_SNP [dm6]	T	A	9.677e^-5	1	UTR_3_PRIME Rep DOWNSTREAM hpo
3R	8346633	3R_8346633_SNP [dm3] 3R_12520911_SNP [dm6]	G	A	9.714e^-5	1	INTRON Octbeta3R
2R	12675005	2R_12675005_SNP [dm3] 2R_16787500_SNP [dm6]	T	A	9.816e^-5	1	INTRON CG5522
3R	17006842	3R_17006842_SNP [dm3] 3R_21181120_SNP [dm6]	A	T	9.819e^-5	1	UTR_5_PRIME SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14676023	2L_14676023_SNP [dm3] 2L_14676023_SNP [dm6]	A	G	9.840e^-5	1	INTRON osp
3R	27448719	3R_27448719_SNP [dm3] 3R_31622997_SNP [dm6]	C	A	9.851e^-5	1	DOWNSTREAM pasha INTRON kek6
3L	16234987	3L_16234987_SNP [dm3] 3L_16241887_SNP [dm6]	A	G	9.884e^-5	1	INTERGENIC
3L	2277684	3L_2277684_SNP [dm3] 3L_2277684_SNP [dm6]	T	C	9.896e^-5	1	SYNONYMOUS_CODING yellow-g2
3L	8546441	3L_8546441_SNP [dm3] 3L_8553341_SNP [dm6]	G	C	9.964e^-5	1	INTRON rhea	TF binding site BDTNP1_TFBS_twi
2L	7087010	2L_7087010_SNP [dm3] 2L_7087010_SNP [dm6]	A	C	9.967e^-5	1	INTERGENIC
X	7545557	X_7545557_SNP [dm3] X_7651524_SNP [dm6]	T	A	9.969e^-5	1	INTRON ct	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11223581	2L_11223581_SNP [dm3] 2L_11223581_SNP [dm6]	T	A	1.003e^-4	1	INTRON ab
3L	2896552	3L_2896552_SNP [dm3] 3L_2896552_SNP [dm6]	A	G	1.007e^-4	1	UPSTREAM Shab INTRON Shab	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	12579985	X_12579985_SNP [dm3] X_12685952_SNP [dm6]	G	A	1.007e^-4	1	UTR_3_PRIME Smr DOWNSTREAM Smr
3L	21258065	3L_21258065_INS [dm3] 3L_21264965_INS [dm6]	A	AA	1.023e^-4	1	UTR_3_PRIME Eip78C
X	13955851	X_13955851_INS [dm3] X_14061818_INS [dm6]	G	GGCTG	1.023e^-4	1	UPSTREAM Ste:CG33236 INTERGENIC
3R	25732368	3R_25732368_SNP [dm3] 3R_29906646_SNP [dm6]	C	A	1.037e^-4	1	DOWNSTREAM CG15515 INTERGENIC
3R	8352159	3R_8352159_SNP [dm3] 3R_12526437_SNP [dm6]	C	G	1.040e^-4	1	NON_SYNONYMOUS_CODING Hug SPLICE_SITE_REGION Hug INTRON Octbeta3R
X	5156996	X_5156996_SNP [dm3] X_5262963_SNP [dm6]	G	A	1.046e^-4	1	INTERGENIC
2L	3753356	2L_3753356_SNP [dm3] 2L_3753356_SNP [dm6]	G	A	1.049e^-4	1	UTR_3_PRIME CG10019
3R	12845352	3R_12845352_SNP [dm3] 3R_17019630_SNP [dm6]	G	A	1.062e^-4	1	SYNONYMOUS_CODING AdSL INTRON Pxd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15377752	2R_15377752_SNP [dm3] 2R_19490247_SNP [dm6]	T	C	1.068e^-4	1	SYNONYMOUS_CODING Oseg6
2R	19089108	2R_19089108_SNP [dm3] 2R_23201585_SNP [dm6]	T	G	1.072e^-4	1	INTRON CG34371	TF binding site BDTNP1_TFBS_twi
2L	9297416	2L_9297416_SNP [dm3] 2L_9297416_SNP [dm6]	G	A	1.073e^-4	1	UTR_3_PRIME Ggamma30A
2R	18757649	2R_18757649_SNP [dm3] 2R_22870126_SNP [dm6]	T	C	1.077e^-4	1	SYNONYMOUS_CODING fd59A	TF binding site mE1_TFBS_cad
3L	17814246	3L_17814246_SNP [dm3] 3L_17821146_SNP [dm6]	G	A	1.083e^-4	1	UPSTREAM Ir75b INTRON Ir75c
2L	10475260	2L_10475260_SNP [dm3] 2L_10475260_SNP [dm6]	C	T	1.087e^-4	1	UPSTREAM RluA-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10912507	2L_10912507_DEL [dm3] 2L_10912507_DEL [dm6]	AAT	A	1.087e^-4	1	INTERGENIC
3R	14834862	3R_14834862_SNP [dm3] 3R_19009140_SNP [dm6]	C	T	1.098e^-4	1	INTRON gukh
2R	15384377	2R_15384377_SNP [dm3] 2R_19496872_SNP [dm6]	T	A	1.106e^-4	1	UPSTREAM CG15120 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2R	16550813	2R_16550813_SNP [dm3] 2R_20663308_SNP [dm6]	G	A	1.111e^-4	1	SYNONYMOUS_CODING Fem-1 DOWNSTREAM CG13437	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18232090	2R_18232090_SNP [dm3] 2R_22344585_SNP [dm6]	T	G	1.111e^-4	1	INTRON Liprin-gamma
2L	4371256	2L_4371256_SNP [dm3] 2L_4371256_SNP [dm6]	T	G	1.112e^-4	1	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2R	18005773	2R_18005773_SNP [dm3] 2R_22118268_SNP [dm6]	G	T	1.130e^-4	1	INTRON Vrp1
2L	10912512	2L_10912512_SNP [dm3] 2L_10912512_SNP [dm6]	T	G	1.138e^-4	1	INTERGENIC
2R	15383711	2R_15383711_SNP [dm3] 2R_19496206_SNP [dm6]	T	A	1.169e^-4	1	SYNONYMOUS_CODING hpo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11485346	2L_11485346_SNP [dm3] 2L_11485346_SNP [dm6]	T	C	1.173e^-4	1	SYNONYMOUS_CODING CG43355 UTR_5_PRIME sala UPSTREAM sala	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4371304	2L_4371304_SNP [dm3] 2L_4371304_SNP [dm6]	C	G	1.173e^-4	1	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	5759723	2L_5759723_SNP [dm3] 2L_5759723_SNP [dm6]	C	A	1.177e^-4	1	SYNONYMOUS_CODING CG11030
2R	18578778	2R_18578778_SNP [dm3] 2R_22691273_SNP [dm6]	G	A	1.179e^-4	1	DOWNSTREAM CR44763 EXON CR44764	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18932415	2L_18932415_SNP [dm3] 2L_18932415_SNP [dm6]	T	A	1.186e^-4	1	INTRON ssp3
2L	4371246	2L_4371246_SNP [dm3] 2L_4371246_SNP [dm6]	T	G	1.189e^-4	1	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
X	5619040	X_5619040_SNP [dm3] X_5725007_SNP [dm6]	A	G	1.211e^-4	1	INTRON CG32758
2L	15328798	2L_15328798_SNP [dm3] 2L_15328798_SNP [dm6]	A	T	1.215e^-4	1	INTERGENIC
2R	1731367	2R_1731367_SNP [dm3] 2R_5843862_SNP [dm6]	C	A	1.216e^-4	1	INTRON dpr12
3R	22688749	3R_22688749_SNP [dm3] 3R_26863027_SNP [dm6]	T	C	1.225e^-4	1	UPSTREAM IntS12 & 1 other INTRON Lerp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	2522400	2R_2522400_SNP [dm3] 2R_6634895_SNP [dm6]	A	G	1.232e^-4	1	SYNONYMOUS_CODING Trap1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6106420	2L_6106420_SNP [dm3] 2L_6106420_SNP [dm6]	A	T	1.235e^-4	1	INTRON stai
3L	23945762	3L_23945762_SNP [dm3] 3L_23952662_SNP [dm6]	G	A	1.245e^-4	1	INTRON CG40470
3R	4611835	3R_4611835_SNP [dm3] 3R_8786113_SNP [dm6]	G	A	1.252e^-4	1	INTRON Pif1B & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	15377749	2R_15377749_SNP [dm3] 2R_19490244_SNP [dm6]	T	A	1.257e^-4	1	SYNONYMOUS_CODING Oseg6
3L	15693765	3L_15693765_SNP [dm3] 3L_15700665_SNP [dm6]	A	G	1.258e^-4	1	UPSTREAM comm2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	4520411	2L_4520411_SNP [dm3] 2L_4520411_SNP [dm6]	T	C	1.263e^-4	1	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17109464	3R_17109464_SNP [dm3] 3R_21283742_SNP [dm6]	C	A	1.263e^-4	1	INTRON SIFaR & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7721690	3L_7721690_SNP [dm3] 3L_7728590_SNP [dm6]	T	G	1.263e^-4	1	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
3R	14924513	3R_14924513_SNP [dm3] 3R_19098791_SNP [dm6]	T	C	1.270e^-4	1	INTRON CG6040
3L	12326203	3L_12326203_SNP [dm3] 3L_12333103_SNP [dm6]	A	G	1.274e^-4	1	INTRON CG32105	TF binding site mE1_TFBS_HSA
2L	16878368	2L_16878368_SNP [dm3] 2L_16878368_SNP [dm6]	G	T	1.274e^-4	1	UTR_3_PRIME CG32832 DOWNSTREAM CG32832 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12600150	2L_12600150_SNP [dm3] 2L_12600150_SNP [dm6]	A	G	1.290e^-4	1	INTRON nub
3R	4156471	3R_4156471_SNP [dm3] 3R_8330749_SNP [dm6]	T	C	1.294e^-4	1	INTRON Poxm	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12521883	3L_12521883_SNP [dm3] 3L_12528783_SNP [dm6]	G	A	1.296e^-4	1	SYNONYMOUS_CODING nst	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2R	15381296	2R_15381296_SNP [dm3] 2R_19493791_SNP [dm6]	G	A	1.307e^-4	1	SYNONYMOUS_CODING Rep DOWNSTREAM hpo
3L	2626580	3L_2626580_SNP [dm3] 3L_2626580_SNP [dm6]	A	T	1.317e^-4	1	INTRON Pxn	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	5375932	3R_5375932_SNP [dm3] 3R_9550210_SNP [dm6]	A	G	1.320e^-4	1	INTRON mura & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18616573	2R_18616573_SNP [dm3] 2R_22729068_SNP [dm6]	T	C	1.337e^-4	1	INTRON jbug	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4509867	2L_4509867_SNP [dm3] 2L_4509867_SNP [dm6]	A	G	1.353e^-4	1	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16766500	2R_16766500_SNP [dm3] 2R_20878995_SNP [dm6]	T	C	1.354e^-4	1	SYNONYMOUS_CODING Ipk1 UPSTREAM Cib2 DOWNSTREAM Ipk1
2R	2403235	2R_2403235_SNP [dm3] 2R_6515730_SNP [dm6]	A	G	1.364e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	7730170	X_7730170_SNP [dm3] X_7836137_SNP [dm6]	A	G	1.368e^-4	1	INTRON CG1402
3L	839651	3L_839651_SNP [dm3] 3L_839651_SNP [dm6]	T	C	1.371e^-4	1	UTR_3_PRIME CG13887 DOWNSTREAM CG13902
3R	14835032	3R_14835032_SNP [dm3] 3R_19009310_SNP [dm6]	C	T	1.376e^-4	1	INTRON gukh
2R	15383693	2R_15383693_SNP [dm3] 2R_19496188_SNP [dm6]	C	T	1.382e^-4	1	SYNONYMOUS_CODING hpo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3058145	3L_3058145_SNP [dm3] 3L_3058145_SNP [dm6]	G	A	1.391e^-4	1	INTRON CG32486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12991953	2L_12991953_SNP [dm3] 2L_12991953_SNP [dm6]	G	T	1.392e^-4	1	INTERGENIC
2L	18504005	2L_18504005_SNP [dm3] 2L_18504005_SNP [dm6]	T	C	1.393e^-4	1	UPSTREAM kon INTERGENIC
3R	17066436	3R_17066436_SNP [dm3] 3R_21240714_SNP [dm6]	G	T	1.398e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2R	15779211	2R_15779211_SNP [dm3] 2R_19891706_SNP [dm6]	G	A	1.400e^-4	1	INTERGENIC
X	13320450	X_13320450_SNP [dm3] X_13426417_SNP [dm6]	A	G	1.401e^-4	1	INTERGENIC
2R	17920874	2R_17920874_SNP [dm3] 2R_22033369_SNP [dm6]	A	G	1.403e^-4	1	INTRON CG34370
3R	3695736	3R_3695736_SNP [dm3] 3R_7870014_SNP [dm6]	C	T	1.403e^-4	1	INTRON CG17816
2R	1643741	2R_1643741_SNP [dm3] 2R_5756236_SNP [dm6]	T	G	1.409e^-4	1	UTR_3_PRIME l_2_09851 DOWNSTREAM l_2_09851
2R	19878827	2R_19878827_SNP [dm3] 2R_23991304_SNP [dm6]	C	T	1.414e^-4	1	SYNONYMOUS_CODING Pask DOWNSTREAM CG3860
X	18394913	X_18394913_SNP [dm3] X_18500880_SNP [dm6]	G	A	1.414e^-4	1	SYNONYMOUS_CODING Rad51D UPSTREAM GalNAc-T2 DOWNSTREAM Wnt5	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_ttk
2L	22868138	2L_22868138_SNP [dm3] 2L_22975406_SNP [dm6]	T	C	1.448e^-4	1	INTERGENIC
2R	18005772	2R_18005772_SNP [dm3] 2R_22118267_SNP [dm6]	T	C	1.476e^-4	1	INTRON Vrp1
2R	18005775	2R_18005775_SNP [dm3] 2R_22118270_SNP [dm6]	G	A	1.476e^-4	1	INTRON Vrp1
2R	17219150	2R_17219150_SNP [dm3] 2R_21331645_SNP [dm6]	G	A	1.492e^-4	1	DOWNSTREAM snoRNA:Psi18S-841c & 2 others INTRON dom EXON snoRNA:Me28S-A2589c
3L	6379888	3L_6379888_DEL [dm3] 3L_6386788_DEL [dm6]	ATTAGCAGCTC...	A	1.494e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	10291931	3R_10291931_SNP [dm3] 3R_14466209_SNP [dm6]	C	A	1.506e^-4	1	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10912372	2L_10912372_SNP [dm3] 2L_10912372_SNP [dm6]	T	C	1.510e^-4	1	INTERGENIC
3R	10291869	3R_10291869_SNP [dm3] 3R_14466147_SNP [dm6]	G	A	1.513e^-4	1	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17810896	3L_17810896_SNP [dm3] 3L_17817796_SNP [dm6]	C	T	1.513e^-4	1	DOWNSTREAM Ir75b INTRON Ir75a
3L	7721688	3L_7721688_SNP [dm3] 3L_7728588_SNP [dm6]	A	G	1.521e^-4	1	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
3L	4101331	3L_4101331_SNP [dm3] 3L_4101331_SNP [dm6]	T	A	1.526e^-4	1	UPSTREAM CG14995 INTRON CG14995
2L	18013670	2L_18013670_SNP [dm3] 2L_18013670_SNP [dm6]	G	A	1.533e^-4	1	INTRON rdo	regulatory region REDfly_CRMs
3L	15193115	3L_15193115_SNP [dm3] 3L_15200015_SNP [dm6]	T	A	1.548e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	15382214	2R_15382214_SNP [dm3] 2R_19494709_SNP [dm6]	G	A	1.549e^-4	1	SYNONYMOUS_CODING hpo DOWNSTREAM Rep	TF binding site mE1_TFBS_cad
2L	6106431	2L_6106431_SNP [dm3] 2L_6106431_SNP [dm6]	T	A	1.552e^-4	1	INTRON stai
3L	3101745	3L_3101745_INS [dm3] 3L_3101745_INS [dm6]	T	TT	1.561e^-4	1	INTRON Cht7
3L	3101751	3L_3101751_INS [dm3] 3L_3101751_INS [dm6]	A	ATGTT	1.561e^-4	1	INTRON Cht7
3L	3101754	3L_3101754_INS [dm3] 3L_3101754_INS [dm6]	A	TTAATC	1.561e^-4	1	INTRON Cht7
X	4730324	X_4730324_SNP [dm3] X_4836291_SNP [dm6]	G	A	1.564e^-4	1	INTERGENIC
X	7752373	X_7752373_SNP [dm3] X_7858340_SNP [dm6]	A	T	1.567e^-4	1	SYNONYMOUS_CODING CG1409
3L	3924563	3L_3924563_SNP [dm3] 3L_3924563_SNP [dm6]	C	T	1.572e^-4	1	INTRON Eip63F-1
3L	9751938	3L_9751938_SNP [dm3] 3L_9758838_SNP [dm6]	A	G	1.582e^-4	1	INTRON CG42268
3R	16908430	3R_16908430_SNP [dm3] 3R_21082708_SNP [dm6]	A	G	1.583e^-4	1	DOWNSTREAM RhoGAP93B INTERGENIC
3L	8837322	3L_8837322_SNP [dm3] 3L_8844222_SNP [dm6]	C	T	1.585e^-4	1	INTRON dally
2R	2523756	2R_2523756_SNP [dm3] 2R_6636251_SNP [dm6]	A	C	1.599e^-4	1	START_GAINED Trap1 UTR_5_PRIME Trap1 UPSTREAM Bap170 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	4455005	2L_4455005_SNP [dm3] 2L_4455005_SNP [dm6]	T	G	1.603e^-4	1	UPSTREAM CG15440 DOWNSTREAM Gs1l INTRON CG15434	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2438252	2R_2438252_INS [dm3] 2R_6550747_INS [dm6]	T	TCAT	1.611e^-4	1	INTRON jing
3L	17814228	3L_17814228_SNP [dm3] 3L_17821128_SNP [dm6]	G	A	1.612e^-4	1	UPSTREAM Ir75b INTRON Ir75c
3L	18321599	3L_18321599_SNP [dm3] 3L_18328499_SNP [dm6]	T	G	1.632e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	15383852	2R_15383852_SNP [dm3] 2R_19496347_SNP [dm6]	C	A	1.633e^-4	1	SYNONYMOUS_CODING hpo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17215876	2R_17215876_SNP [dm3] 2R_21328371_SNP [dm6]	A	T	1.647e^-4	1	INTRON dom EXON snoRNA:Me28S-A2589b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7088624	2L_7088624_SNP [dm3] 2L_7088624_SNP [dm6]	T	C	1.653e^-4	1	INTERGENIC
2L	4513541	2L_4513541_SNP [dm3] 2L_4513541_SNP [dm6]	G	A	1.667e^-4	1	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21495123	3R_21495123_SNP [dm3] 3R_25669401_SNP [dm6]	A	G	1.677e^-4	1	SYNONYMOUS_CODING Lgr3
2L	8466591	2L_8466591_SNP [dm3] 2L_8466591_SNP [dm6]	G	A	1.691e^-4	1	UTR_3_PRIME fu2 UPSTREAM d DOWNSTREAM fu2	TF binding site BDTNP1_TFBS_dl
3L	8365383	3L_8365383_SNP [dm3] 3L_8372283_SNP [dm6]	C	T	1.692e^-4	1	UPSTREAM ImpE1 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5621848	2L_5621848_SNP [dm3] 2L_5621848_SNP [dm6]	C	T	1.693e^-4	1	NON_SYNONYMOUS_CODING Cyp6a16	TF binding site mE1_TFBS_chinmo
3R	12960707	3R_12960707_SNP [dm3] 3R_17134985_SNP [dm6]	C	T	1.701e^-4	1	SYNONYMOUS_CODING CG31267
3L	2493139	3L_2493139_SNP [dm3] 3L_2493139_SNP [dm6]	T	A	1.706e^-4	1	DOWNSTREAM CG1146 INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10549950	3L_10549950_SNP [dm3] 3L_10556850_SNP [dm6]	G	T	1.712e^-4	1	DOWNSTREAM CG6527 INTRON A2bp1	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	7138066	2L_7138066_SNP [dm3] 2L_7138066_SNP [dm6]	G	A	1.716e^-4	1	INTRON Pvf3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	8090911	3R_8090911_SNP [dm3] 3R_12265189_SNP [dm6]	C	T	1.719e^-4	1	INTRON svp	TF binding site mE1_TFBS_chinmo
2L	2736573	2L_2736573_SNP [dm3] 2L_2736573_SNP [dm6]	C	G	1.720e^-4	1	UPSTREAM mir-4914 INTRON CG31689
2L	13139091	2L_13139091_SNP [dm3] 2L_13139091_SNP [dm6]	C	G	1.726e^-4	1	INTERGENIC
2L	2685246	2L_2685246_SNP [dm3] 2L_2685246_SNP [dm6]	A	C	1.729e^-4	1	INTRON CG31690
X	12582863	X_12582863_SNP [dm3] X_12688830_SNP [dm6]	C	G	1.735e^-4	1	SYNONYMOUS_CODING Smr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9338286	2L_9338286_SNP [dm3] 2L_9338286_SNP [dm6]	G	A	1.743e^-4	1	SYNONYMOUS_CODING Eaat1
3L	4219919	3L_4219919_SNP [dm3] 3L_4219919_SNP [dm6]	T	A	1.752e^-4	1	INTRON CG43367
3L	4219955	3L_4219955_SNP [dm3] 3L_4219955_SNP [dm6]	A	G	1.752e^-4	1	INTRON CG43367
2L	10012733	2L_10012733_SNP [dm3] 2L_10012733_SNP [dm6]	T	A	1.761e^-4	1	UTR_3_PRIME Trp1 DOWNSTREAM Trp1 & 1 other
X	20920127	X_20920127_SNP [dm3] X_21049100_SNP [dm6]	G	A	1.768e^-4	1	DOWNSTREAM CG1518 & 1 other INTERGENIC
3R	10292211	3R_10292211_SNP [dm3] 3R_14466489_SNP [dm6]	G	C	1.771e^-4	1	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	23856730	3R_23856730_SNP [dm3] 3R_28031008_SNP [dm6]	T	A	1.772e^-4	1	SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2736549	2L_2736549_SNP [dm3] 2L_2736549_SNP [dm6]	G	T	1.777e^-4	1	INTRON CG31689
2R	2520392	2R_2520392_SNP [dm3] 2R_6632887_SNP [dm6]	C	A	1.786e^-4	1	UPSTREAM Vha16-1 DOWNSTREAM Trap1 INTRON Vha16-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	6680235	X_6680235_SNP [dm3] X_6786202_SNP [dm6]	T	G	1.788e^-4	1	SYNONYMOUS_CODING C3G	TF binding site mE1_TFBS_chinmo
3L	8771153	3L_8771153_SNP [dm3] 3L_8778053_SNP [dm6]	C	T	1.790e^-4	1	INTRON Fhos
3R	8901716	3R_8901716_INS [dm3] 3R_13075994_INS [dm6]	T	TT	1.795e^-4	1	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	2686036	2R_2686036_SNP [dm3] 2R_6798531_SNP [dm6]	T	C	1.799e^-4	1	INTRON Epac
3R	23856535	3R_23856535_SNP [dm3] 3R_28030813_SNP [dm6]	G	A	1.804e^-4	1	SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2736548	2L_2736548_SNP [dm3] 2L_2736548_SNP [dm6]	A	G	1.804e^-4	1	INTRON CG31689
2L	3165595	2L_3165595_SNP [dm3] 2L_3165595_SNP [dm6]	G	A	1.807e^-4	1	INTRON Hydr2	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	10694537	2L_10694537_SNP [dm3] 2L_10694537_SNP [dm6]	C	G	1.815e^-4	1	UPSTREAM CR44181 & 1 other DOWNSTREAM CG7300 INTERGENIC
3R	24359067	3R_24359067_SNP [dm3] 3R_28533345_SNP [dm6]	C	T	1.822e^-4	1	INTRON Ppn	TF binding site BDTNP1_TFBS_twi
3R	14924547	3R_14924547_SNP [dm3] 3R_19098825_SNP [dm6]	C	G	1.834e^-4	1	INTRON CG6040
X	16829881	X_16829881_SNP [dm3] X_16935848_SNP [dm6]	G	A	1.852e^-4	1	NON_SYNONYMOUS_CODING CG4928 INTRON CG4928
2R	2440068	2R_2440068_SNP [dm3] 2R_6552563_SNP [dm6]	C	T	1.871e^-4	1	INTRON jing
2R	19835585	2R_19835585_SNP [dm3] 2R_23948062_SNP [dm6]	T	A	1.871e^-4	1	SYNONYMOUS_CODING CG13565 INTRON CG13565
2R	1699590	2R_1699590_SNP [dm3] 2R_5812085_SNP [dm6]	G	A	1.874e^-4	1	INTRON dpr12	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13674334	2R_13674334_SNP [dm3] 2R_17786829_SNP [dm6]	G	C	1.885e^-4	1	SYNONYMOUS_CODING aft	TF binding site mE1_TFBS_sens
3L	4212824	3L_4212824_SNP [dm3] 3L_4212824_SNP [dm6]	T	A	1.887e^-4	1	INTRON CG43367 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6374059	3L_6374059_SNP [dm3] 3L_6380959_SNP [dm6]	C	A	1.890e^-4	1	INTERGENIC
2L	4520598	2L_4520598_SNP [dm3] 2L_4520598_SNP [dm6]	A	G	1.905e^-4	1	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8370724	2R_8370724_SNP [dm3] 2R_12483219_SNP [dm6]	A	T	1.919e^-4	1	INTRON Dh44-R2
2L	16406672	2L_16406672_SNP [dm3] 2L_16406672_SNP [dm6]	A	T	1.929e^-4	1	UPSTREAM CG5888 INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16406675	2L_16406675_INS [dm3] 2L_16406675_INS [dm6]	T	TT	1.929e^-4	1	UPSTREAM CG5888 INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2390867	2L_2390867_SNP [dm3] 2L_2390867_SNP [dm6]	G	A	1.932e^-4	1	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
2R	2544149	2R_2544149_SNP [dm3] 2R_6656644_SNP [dm6]	G	A	1.934e^-4	1	UPSTREAM sced & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	15384387	2R_15384387_SNP [dm3] 2R_19496882_SNP [dm6]	G	A	1.939e^-4	1	UPSTREAM CG15120 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2R	2438246	2R_2438246_DEL [dm3] 2R_6550741_DEL [dm6]	CTATG	C	1.956e^-4	1	INTRON jing
2L	5904799	2L_5904799_INS [dm3] 2L_5904799_INS [dm6]	A	AA	1.964e^-4	1	UPSTREAM CG9021 DOWNSTREAM CR43808 INTERGENIC
2R	10233159	2R_10233159_SNP [dm3] 2R_14345654_SNP [dm6]	C	A	1.966e^-4	1	INTRON Shroom
2R	19876610	2R_19876610_SNP [dm3] 2R_23989087_SNP [dm6]	G	T	1.970e^-4	1	SYNONYMOUS_CODING Pask UPSTREAM Phm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	16983240	2R_16983240_SNP [dm3] 2R_21095735_SNP [dm6]	C	A	1.978e^-4	1	DOWNSTREAM CG4038 INTRON CG34396
X	8947722	X_8947722_SNP [dm3] X_9053689_SNP [dm6]	T	C	1.980e^-4	1	UTR_3_PRIME CG42388 DOWNSTREAM CG42388	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	10628541	X_10628541_SNP [dm3] X_10734508_SNP [dm6]	A	C	1.985e^-4	1	INTRON CG32676
X	10839358	X_10839358_SNP [dm3] X_10945325_SNP [dm6]	A	T	1.990e^-4	1	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
2R	8502734	2R_8502734_SNP [dm3] 2R_12615229_SNP [dm6]	C	G	2.001e^-4	1	UPSTREAM Galphaq INTRON Galphaq & 1 other	TF binding site mE1_TFBS_sens
2L	13139202	2L_13139202_SNP [dm3] 2L_13139202_SNP [dm6]	G	A	2.005e^-4	1	INTERGENIC
2L	2703029	2L_2703029_DEL [dm3] 2L_2703029_DEL [dm6]	CGGCCATTCATCCGACCCAT...	C	2.028e^-4	1	INTRON CG31690
X	20223437	X_20223437_SNP [dm3] X_20352410_SNP [dm6]	T	G	2.051e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	18509218	2L_18509218_SNP [dm3] 2L_18509218_SNP [dm6]	G	T	2.060e^-4	1	UPSTREAM CG10178 INTERGENIC
2L	5064447	2L_5064447_SNP [dm3] 2L_5064447_SNP [dm6]	C	T	2.061e^-4	1	UTR_5_PRIME qtc INTRON qtc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	12740879	3R_12740879_DEL [dm3] 3R_16915157_DEL [dm6]	CC	G	2.071e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4118497	3L_4118497_SNP [dm3] 3L_4118497_SNP [dm6]	G	T	2.072e^-4	1	INTRON Chd64
2R	19888434	2R_19888434_SNP [dm3] 2R_24000911_SNP [dm6]	T	G	2.078e^-4	1	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9297472	2L_9297472_SNP [dm3] 2L_9297472_SNP [dm6]	T	A	2.082e^-4	1	UTR_3_PRIME Ggamma30A
2R	5188789	2R_5188789_SNP [dm3] 2R_9301284_SNP [dm6]	A	T	2.096e^-4	1	UTR_3_PRIME Drep-2
3R	14071193	3R_14071193_SNP [dm3] 3R_18245471_SNP [dm6]	A	T	2.114e^-4	1	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	7721452	3L_7721452_SNP [dm3] 3L_7728352_SNP [dm6]	A	G	2.119e^-4	1	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
2R	18570666	2R_18570666_SNP [dm3] 2R_22683161_SNP [dm6]	C	A	2.124e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_sens
3R	10544434	3R_10544434_SNP [dm3] 3R_14718712_SNP [dm6]	A	T	2.132e^-4	1	INTRON kibra	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12626887	2L_12626887_SNP [dm3] 2L_12626887_SNP [dm6]	T	C	2.134e^-4	1	SYNONYMOUS_CODING nub INTRON Ref2	TF binding site mE1_TFBS_cad
3L	23237512	3L_23237512_SNP [dm3] 3L_23244412_SNP [dm6]	G	A	2.142e^-4	1	INTRON nAChRalpha4
3R	11589586	3R_11589586_SNP [dm3] 3R_15763864_SNP [dm6]	G	A	2.146e^-4	1	DOWNSTREAM CG12784 INTERGENIC
2R	1574894	2R_1574894_SNP [dm3] 2R_5687389_SNP [dm6]	G	A	2.153e^-4	1	INTRON scaf
2R	13859990	2R_13859990_SNP [dm3] 2R_17972485_SNP [dm6]	G	A	2.160e^-4	1	INTERGENIC
2L	2390909	2L_2390909_SNP [dm3] 2L_2390909_SNP [dm6]	A	C	2.162e^-4	1	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
X	5009284	X_5009284_SNP [dm3] X_5115251_SNP [dm6]	A	G	2.169e^-4	1	INTRON rg & 1 other
3R	10248243	3R_10248243_SNP [dm3] 3R_14422521_SNP [dm6]	C	T	2.173e^-4	1	DOWNSTREAM natalisin INTRON cv-c EXON CR44176
X	12675849	X_12675849_SNP [dm3] X_12781816_SNP [dm6]	C	T	2.180e^-4	1	INTRON CG32647
2L	10435610	2L_10435610_INS [dm3] 2L_10435610_INS [dm6]	C	CC	2.186e^-4	1	UTR_5_PRIME CG5337 UPSTREAM holn1
2L	4371850	2L_4371850_SNP [dm3] 2L_4371850_SNP [dm6]	A	C	2.190e^-4	1	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
X	19920651	X_19920651_SNP [dm3] X_20026618_SNP [dm6]	C	T	2.214e^-4	1	INTRON Dop2R
3L	7302555	3L_7302555_SNP [dm3] 3L_7309455_SNP [dm6]	A	G	2.218e^-4	1	INTRON unc-13-4A
3L	837603	3L_837603_SNP [dm3] 3L_837603_SNP [dm6]	C	T	2.220e^-4	1	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3R	25736830	3R_25736830_SNP [dm3] 3R_29911108_SNP [dm6]	A	T	2.223e^-4	1	NON_SYNONYMOUS_CODING CG31036	TF binding site mE1_TFBS_cad
2L	17976994	2L_17976994_SNP [dm3] 2L_17976994_SNP [dm6]	T	G	2.229e^-4	1	NON_SYNONYMOUS_CODING btv
2L	2663376	2L_2663376_SNP [dm3] 2L_2663376_SNP [dm6]	A	C	2.232e^-4	1	INTERGENIC
X	17280738	X_17280738_SNP [dm3] X_17386705_SNP [dm6]	A	G	2.244e^-4	1	INTERGENIC
3L	9399390	3L_9399390_SNP [dm3] 3L_9406290_SNP [dm6]	A	C	2.253e^-4	1	UTR_3_PRIME CG4022 DOWNSTREAM Cpr67B
3R	5144752	3R_5144752_SNP [dm3] 3R_9319030_SNP [dm6]	T	C	2.259e^-4	1	INTRON CG8861
3L	11511944	3L_11511944_SNP [dm3] 3L_11518844_SNP [dm6]	G	T	2.266e^-4	1	UTR_3_PRIME CG7512 & 1 other
2R	2460514	2R_2460514_SNP [dm3] 2R_6573009_SNP [dm6]	A	G	2.283e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18612953	2L_18612953_SNP [dm3] 2L_18612953_SNP [dm6]	A	C	2.303e^-4	1	UPSTREAM Atac2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7889316	2L_7889316_SNP [dm3] 2L_7889316_SNP [dm6]	G	C	2.306e^-4	1	UTR_3_PRIME Spn28Db UPSTREAM Spn28Da
2R	2398108	2R_2398108_SNP [dm3] 2R_6510603_SNP [dm6]	T	A	2.308e^-4	1	UPSTREAM CR45127 INTRON jing	TF binding site BDTNP1_TFBS_dl
2R	5019214	2R_5019214_SNP [dm3] 2R_9131709_SNP [dm6]	C	A	2.308e^-4	1	UTR_5_PRIME CG18659 UPSTREAM Hydr1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	9744020	3R_9744020_SNP [dm3] 3R_13918298_SNP [dm6]	T	G	2.314e^-4	1	INTERGENIC
2L	18496688	2L_18496688_SNP [dm3] 2L_18496688_SNP [dm6]	A	T	2.314e^-4	1	INTRON kon
X	5340406	X_5340406_SNP [dm3] X_5446373_SNP [dm6]	A	G	2.327e^-4	1	UPSTREAM SPR INTERGENIC
3R	3047308	3R_3047308_SNP [dm3] 3R_7221586_SNP [dm6]	C	G	2.328e^-4	1	INTERGENIC
2R	8986997	2R_8986997_SNP [dm3] 2R_13099492_SNP [dm6]	A	T	2.331e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16094305	3L_16094305_SNP [dm3] 3L_16101205_SNP [dm6]	T	C	2.332e^-4	1	NON_SYNONYMOUS_CODING CG5414
3R	15151139	3R_15151139_SNP [dm3] 3R_19325417_SNP [dm6]	T	A	2.334e^-4	1	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	5229881	2L_5229881_SNP [dm3] 2L_5229881_SNP [dm6]	T	C	2.339e^-4	1	INTRON tkv	TF binding site mE1_TFBS_sbb
2L	18612963	2L_18612963_SNP [dm3] 2L_18612963_SNP [dm6]	A	G	2.343e^-4	1	UPSTREAM Atac2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5904495	2L_5904495_DEL [dm3] 2L_5904495_DEL [dm6]	AGTGGAAAGATAACGAAAAA...	A	2.350e^-4	1	DOWNSTREAM CR43808 INTRON CG9021
2L	2685254	2L_2685254_SNP [dm3] 2L_2685254_SNP [dm6]	T	C	2.351e^-4	1	INTRON CG31690
2L	15456417	2L_15456417_SNP [dm3] 2L_15456417_SNP [dm6]	C	T	2.378e^-4	1	INTERGENIC
2L	4524885	2L_4524885_SNP [dm3] 2L_4524885_SNP [dm6]	C	T	2.378e^-4	1	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16780098	2L_16780098_SNP [dm3] 2L_16780098_SNP [dm6]	C	T	2.382e^-4	1	INTRON Mhc
3L	15254537	3L_15254537_SNP [dm3] 3L_15261437_SNP [dm6]	T	C	2.382e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	9868187	X_9868187_SNP [dm3] X_9974154_SNP [dm6]	A	G	2.392e^-4	1	INTRON CG43386
2R	15378097	2R_15378097_SNP [dm3] 2R_19490592_SNP [dm6]	T	C	2.397e^-4	1	SYNONYMOUS_CODING Oseg6	TF binding site mE1_TFBS_inv
3L	837721	3L_837721_SNP [dm3] 3L_837721_SNP [dm6]	C	G	2.406e^-4	1	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	10912439	2L_10912439_SNP [dm3] 2L_10912439_SNP [dm6]	T	A	2.408e^-4	1	INTERGENIC
2L	17979751	2L_17979751_SNP [dm3] 2L_17979751_SNP [dm6]	C	T	2.417e^-4	1	NON_SYNONYMOUS_CODING btv	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5668252	2L_5668252_SNP [dm3] 2L_5668252_SNP [dm6]	T	C	2.421e^-4	1	INTRON Hsp60C
2R	18935001	2R_18935001_SNP [dm3] 2R_23047478_SNP [dm6]	A	T	2.422e^-4	1	SYNONYMOUS_CODING twi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	7214580	2L_7214580_SNP [dm3] 2L_7214580_SNP [dm6]	A	T	2.422e^-4	1	INTRON CG13784
X	17187664	X_17187664_SNP [dm3] X_17293631_SNP [dm6]	A	T	2.449e^-4	1	INTRON CG5445 & 1 other
2R	16456495	2R_16456495_SNP [dm3] 2R_20568990_SNP [dm6]	C	T	2.450e^-4	1	INTRON qsm
2R	15692293	2R_15692293_SNP [dm3] 2R_19804788_SNP [dm6]	G	A	2.461e^-4	1	INTERGENIC
2L	965363	2L_965363_SNP [dm3] 2L_965363_SNP [dm6]	T	A	2.469e^-4	1	INTERGENIC
2R	1133439	2R_1133439_DEL [dm3] 2R_5245934_DEL [dm6]	TG	T	2.470e^-4	1	INTRON Nipped-A	transposable element FlyBase
2L	2738000	2L_2738000_SNP [dm3] 2L_2738000_SNP [dm6]	T	C	2.471e^-4	1	DOWNSTREAM mir-4914 INTRON CG31689
2R	19833408	2R_19833408_SNP [dm3] 2R_23945885_SNP [dm6]	C	T	2.483e^-4	1	INTRON Galphas
2L	10440331	2L_10440331_SNP [dm3] 2L_10440331_SNP [dm6]	T	C	2.487e^-4	1	SYNONYMOUS_CODING CG13142	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10343927	3L_10343927_SNP [dm3] 3L_10350827_SNP [dm6]	G	T	2.487e^-4	1	INTRON CR44327
2L	1731092	2L_1731092_SNP [dm3] 2L_1731092_SNP [dm6]	C	T	2.494e^-4	1	UTR_3_PRIME CG17652 DOWNSTREAM CG17652 & 1 other	TF binding site mE1_TFBS_cad
3L	8047861	3L_8047861_SNP [dm3] 3L_8054761_SNP [dm6]	G	A	2.497e^-4	1	SYNONYMOUS_CODING bip1 DOWNSTREAM nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11363562	3L_11363562_SNP [dm3] 3L_11370462_SNP [dm6]	T	A	2.501e^-4	1	INTERGENIC
3L	16094304	3L_16094304_SNP [dm3] 3L_16101204_SNP [dm6]	C	T	2.509e^-4	1	SYNONYMOUS_CODING CG5414
2L	15329648	2L_15329648_SNP [dm3] 2L_15329648_SNP [dm6]	C	T	2.517e^-4	1	INTERGENIC
2R	18588170	2R_18588170_SNP [dm3] 2R_22700665_SNP [dm6]	G	C	2.517e^-4	1	UPSTREAM robo DOWNSTREAM CG30259 INTRON robo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2R	1782368	2R_1782368_SNP [dm3] 2R_5894863_SNP [dm6]	G	T	2.525e^-4	1	INTRON CG43366
X	3761314	X_3761314_SNP [dm3] X_3867281_SNP [dm6]	G	A	2.526e^-4	1	UPSTREAM yin INTRON yin	TF binding site mE1_TFBS_Trl
X	19236873	X_19236873_SNP [dm3] X_19342840_SNP [dm6]	A	G	2.536e^-4	1	SPLICE_SITE_REGION nAChRalpha7 INTRON nAChRalpha7
2L	2685239	2L_2685239_SNP [dm3] 2L_2685239_SNP [dm6]	A	C	2.543e^-4	1	INTRON CG31690
3R	15151138	3R_15151138_SNP [dm3] 3R_19325416_SNP [dm6]	A	G	2.559e^-4	1	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	492561	2L_492561_SNP [dm3] 2L_492561_SNP [dm6]	G	A	2.576e^-4	1	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	3165750	2L_3165750_SNP [dm3] 2L_3165750_SNP [dm6]	A	G	2.577e^-4	1	INTRON Hydr2	TF binding site BDTNP1_TFBS_da
3L	3983618	3L_3983618_SNP [dm3] 3L_3983618_SNP [dm6]	T	C	2.582e^-4	1	UPSTREAM scrt INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2755836	2L_2755836_SNP [dm3] 2L_2755836_SNP [dm6]	C	T	2.585e^-4	1	INTRON Bacc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14924511	3R_14924511_SNP [dm3] 3R_19098789_SNP [dm6]	T	A	2.586e^-4	1	INTRON CG6040
3R	8901524	3R_8901524_SNP [dm3] 3R_13075802_SNP [dm6]	A	T	2.596e^-4	1	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	16195757	3R_16195757_DEL [dm3] 3R_20370035_DEL [dm6]	TAGAGCTAGCCC...	T	2.598e^-4	1	INTERGENIC
3R	9915602	3R_9915602_SNP [dm3] 3R_14089880_SNP [dm6]	T	C	2.607e^-4	1	UPSTREAM Npc2b INTRON Npc2b
3R	4307553	3R_4307553_SNP [dm3] 3R_8481831_SNP [dm6]	C	A	2.614e^-4	1	INTERGENIC
2L	18013702	2L_18013702_SNP [dm3] 2L_18013702_SNP [dm6]	T	G	2.616e^-4	1	INTRON rdo	regulatory region REDfly_CRMs
2L	6764112	2L_6764112_SNP [dm3] 2L_6764112_SNP [dm6]	G	A	2.619e^-4	1	NON_SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_sens
3L	23898703	3L_23898703_SNP [dm3] 3L_23905603_SNP [dm6]	G	A	2.628e^-4	1	INTRON CG40470
2L	2390810	2L_2390810_SNP [dm3] 2L_2390810_SNP [dm6]	G	A	2.642e^-4	1	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
2L	8466606	2L_8466606_SNP [dm3] 2L_8466606_SNP [dm6]	T	C	2.648e^-4	1	UTR_3_PRIME fu2 UPSTREAM d DOWNSTREAM fu2	TF binding site BDTNP1_TFBS_dl
3L	11363581	3L_11363581_SNP [dm3] 3L_11370481_SNP [dm6]	A	G	2.651e^-4	1	INTERGENIC
3R	9593739	3R_9593739_SNP [dm3] 3R_13768017_SNP [dm6]	T	G	2.657e^-4	1	DOWNSTREAM CG9312 INTRON Cht5
3R	17109339	3R_17109339_SNP [dm3] 3R_21283617_SNP [dm6]	G	T	2.658e^-4	1	NON_SYNONYMOUS_CODING CG17298 INTRON SIFaR	TF binding site mE1_TFBS_cad
X	12943736	X_12943736_SNP [dm3] X_13049703_SNP [dm6]	A	T	2.666e^-4	1	INTRON rad
2R	13114730	2R_13114730_SNP [dm3] 2R_17227225_SNP [dm6]	T	C	2.673e^-4	1	INTRON mbl
2L	10475280	2L_10475280_SNP [dm3] 2L_10475280_SNP [dm6]	C	A	2.675e^-4	1	UPSTREAM RluA-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8047362	3L_8047362_SNP [dm3] 3L_8054262_SNP [dm6]	A	T	2.684e^-4	1	DOWNSTREAM bip1 & 1 other INTERGENIC
2L	16610431	2L_16610431_SNP [dm3] 2L_16610431_SNP [dm6]	A	G	2.690e^-4	1	DOWNSTREAM CG4631 INTRON CG42389
3R	26054440	3R_26054440_SNP [dm3] 3R_30228718_SNP [dm6]	G	C	2.692e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2R	1343241	2R_1343241_SNP [dm3] 2R_5455736_SNP [dm6]	T	C	2.708e^-4	1	UTR_3_PRIME laccase2
3L	1895262	3L_1895262_SNP [dm3] 3L_1895262_SNP [dm6]	C	T	2.718e^-4	1	SYNONYMOUS_CODING CG1887
X	6700645	X_6700645_SNP [dm3] X_6806612_SNP [dm6]	C	T	2.720e^-4	1	SPLICE_SITE_REGION pod1 INTRON pod1
X	6701510	X_6701510_SNP [dm3] X_6807477_SNP [dm6]	T	A	2.720e^-4	1	INTRON pod1
2R	15005859	2R_15005859_SNP [dm3] 2R_19118354_SNP [dm6]	C	G	2.721e^-4	1	NON_SYNONYMOUS_CODING 5-HT1A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14641706	2R_14641706_SNP [dm3] 2R_18754201_SNP [dm6]	A	T	2.738e^-4	1	UTR_3_PRIME Hs3st-A UPSTREAM Cyp12b2
3L	5868744	3L_5868744_DEL [dm3] 3L_5875644_DEL [dm6]	CC	C	2.751e^-4	1	DOWNSTREAM CG18586 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1130506	2R_1130506_SNP [dm3] 2R_5243001_SNP [dm6]	T	C	2.751e^-4	1	INTRON Nipped-A	TF binding site mE1_TFBS_HSA
3L	17815597	3L_17815597_SNP [dm3] 3L_17822497_SNP [dm6]	T	A	2.753e^-4	1	UPSTREAM Grd INTRON Ir75c
2R	15897811	2R_15897811_SNP [dm3] 2R_20010306_SNP [dm6]	C	A	2.756e^-4	1	INTERGENIC
2L	7363777	2L_7363777_SNP [dm3] 2L_7363777_SNP [dm6]	A	T	2.766e^-4	1	INTRON Wnt10
3L	4218599	3L_4218599_SNP [dm3] 3L_4218599_SNP [dm6]	T	C	2.771e^-4	1	SYNONYMOUS_CODING CG43367	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10981132	3L_10981132_SNP [dm3] 3L_10988032_SNP [dm6]	C	G	2.771e^-4	1	INTRON klu
2R	1247878	2R_1247878_SNP [dm3] 2R_5360373_SNP [dm6]	C	A	2.774e^-4	1	UTR_3_PRIME CG10417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12549583	2L_12549583_SNP [dm3] 2L_12549583_SNP [dm6]	C	A	2.775e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17055436	3R_17055436_DEL [dm3] 3R_21229714_DEL [dm6]	TGGGAAAATAATT...	T	2.777e^-4	1	DOWNSTREAM e & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	4156634	3R_4156634_SNP [dm3] 3R_8330912_SNP [dm6]	A	C	2.778e^-4	1	INTRON Poxm	TF binding site BDTNP1_TFBS_twi
2L	8466571	2L_8466571_SNP [dm3] 2L_8466571_SNP [dm6]	A	C	2.779e^-4	1	UTR_3_PRIME fu2 UPSTREAM d DOWNSTREAM fu2	TF binding site BDTNP1_TFBS_dl
2L	6764106	2L_6764106_SNP [dm3] 2L_6764106_SNP [dm6]	A	G	2.781e^-4	1	NON_SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_sens
2L	16406613	2L_16406613_SNP [dm3] 2L_16406613_SNP [dm6]	G	A	2.786e^-4	1	UPSTREAM CG5888 INTRON CG5888	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12961011	3R_12961011_SNP [dm3] 3R_17135289_SNP [dm6]	A	C	2.794e^-4	1	UPSTREAM CG5246 DOWNSTREAM CG31267 INTERGENIC
2L	12600593	2L_12600593_SNP [dm3] 2L_12600593_SNP [dm6]	T	A	2.795e^-4	1	INTRON nub
X	13808605	X_13808605_SNP [dm3] X_13914572_SNP [dm6]	A	T	2.800e^-4	1	INTRON mamo
3R	23055674	3R_23055674_SNP [dm3] 3R_27229952_SNP [dm6]	T	C	2.810e^-4	1	SYNONYMOUS_CODING CG31064 UPSTREAM CG42814 DOWNSTREAM CG31064	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18612957	2L_18612957_SNP [dm3] 2L_18612957_SNP [dm6]	T	C	2.815e^-4	1	UPSTREAM Atac2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4409397	2L_4409397_SNP [dm3] 2L_4409397_SNP [dm6]	T	C	2.816e^-4	1	INTRON CG15431	TF binding site mE1_TFBS_chinmo
X	12671048	X_12671048_SNP [dm3] X_12777015_SNP [dm6]	A	C	2.817e^-4	1	INTRON CG32647
2L	4375192	2L_4375192_SNP [dm3] 2L_4375192_SNP [dm6]	G	A	2.821e^-4	1	INTRON Traf4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	13181535	3L_13181535_SNP [dm3] 3L_13188435_SNP [dm6]	A	T	2.831e^-4	1	INTERGENIC
X	10839490	X_10839490_SNP [dm3] X_10945457_SNP [dm6]	G	A	2.838e^-4	1	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
2L	13566163	2L_13566163_SNP [dm3] 2L_13566163_SNP [dm6]	T	A	2.853e^-4	1	INTRON kuz
2R	17272604	2R_17272604_SNP [dm3] 2R_21385099_SNP [dm6]	A	C	2.859e^-4	1	SYNONYMOUS_CODING EfSec UPSTREAM CG10795	TF binding site mE1_TFBS_sens
2L	2860101	2L_2860101_DEL [dm3] 2L_2860101_DEL [dm6]	AT	A	2.860e^-4	1	INTRON CG2991	TF binding site mE1_TFBS_inv
2L	18612986	2L_18612986_SNP [dm3] 2L_18612986_SNP [dm6]	C	T	2.868e^-4	1	UPSTREAM Atac2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	12665787	X_12665787_SNP [dm3] X_12771754_SNP [dm6]	T	C	2.876e^-4	1	UTR_3_PRIME CG3812 DOWNSTREAM CG32647 & 1 other
3L	10410717	3L_10410717_INS [dm3] 3L_10417617_INS [dm6]	T	TGT	2.880e^-4	1	INTERGENIC
2L	4361176	2L_4361176_SNP [dm3] 2L_4361176_SNP [dm6]	T	G	2.884e^-4	1	UPSTREAM Traf4 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	12352977	2L_12352977_SNP [dm3] 2L_12352977_SNP [dm6]	C	A	2.887e^-4	1	INTRON bru-2	TF binding site BDTNP1_TFBS_dl
3R	4927280	3R_4927280_SNP [dm3] 3R_9101558_SNP [dm6]	C	T	2.890e^-4	1	INTRON pum
2R	15471770	2R_15471770_SNP [dm3] 2R_19584265_SNP [dm6]	G	C	2.893e^-4	1	INTRON sm
3R	12740857	3R_12740857_SNP [dm3] 3R_16915135_SNP [dm6]	A	G	2.897e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14387733	2R_14387733_SNP [dm3] 2R_18500228_SNP [dm6]	A	T	2.897e^-4	1	INTERGENIC
2L	16406614	2L_16406614_SNP [dm3] 2L_16406614_SNP [dm6]	G	T	2.899e^-4	1	UPSTREAM CG5888 INTRON CG5888	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19534695	X_19534695_SNP [dm3] X_19640662_SNP [dm6]	C	A	2.905e^-4	1	UTR_3_PRIME Rcd-1 DOWNSTREAM CG12237	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14059981	3L_14059981_SNP [dm3] 3L_14066881_SNP [dm6]	C	A	2.907e^-4	1	SYNONYMOUS_CODING CG32138	TF binding site mE1_TFBS_cad
2L	3673700	2L_3673700_SNP [dm3] 2L_3673700_SNP [dm6]	G	A	2.920e^-4	1	INTRON CG34340
3R	10188030	3R_10188030_INS [dm3] 3R_14362308_INS [dm6]	G	GAG	2.927e^-4	1	UPSTREAM CG31320 INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	21605282	3R_21605282_SNP [dm3] 3R_25779560_SNP [dm6]	T	A	2.933e^-4	1	INTERGENIC
3L	3011223	3L_3011223_SNP [dm3] 3L_3011223_SNP [dm6]	T	C	2.942e^-4	1	UTR_3_PRIME FMRFaR
3R	7648546	3R_7648546_INS [dm3] 3R_11822824_INS [dm6]	G	GCTTACA	2.943e^-4	1	UTR_3_PRIME CG6959 UPSTREAM CG6950
3L	10980554	3L_10980554_SNP [dm3] 3L_10987454_SNP [dm6]	A	T	2.951e^-4	1	INTRON klu
2R	17212720	2R_17212720_SNP [dm3] 2R_21325215_SNP [dm6]	T	A	2.952e^-4	1	UPSTREAM snoRNA:Me28S-A2589a INTRON dom	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
X	17625919	X_17625919_SNP [dm3] X_17731886_SNP [dm6]	G	A	2.955e^-4	1	INTRON CG42684
2L	16610426	2L_16610426_SNP [dm3] 2L_16610426_SNP [dm6]	C	T	2.959e^-4	1	DOWNSTREAM CG4631 INTRON CG42389
3L	10282833	3L_10282833_SNP [dm3] 3L_10289733_SNP [dm6]	C	G	2.972e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12741188	3R_12741188_SNP [dm3] 3R_16915466_SNP [dm6]	G	A	2.972e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	837495	3L_837495_SNP [dm3] 3L_837495_SNP [dm6]	A	G	2.973e^-4	1	UTR_5_PRIME CG13901 UPSTREAM CG13887 DOWNSTREAM CG42554	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2R	14637154	2R_14637154_DEL [dm3] 2R_18749649_DEL [dm6]	GATATG	CCCA	2.978e^-4	1	INTRON Hs3st-A
3R	20970805	3R_20970805_SNP [dm3] 3R_25145083_SNP [dm6]	A	G	2.985e^-4	1	INTERGENIC
3L	12338988	3L_12338988_SNP [dm3] 3L_12345888_SNP [dm6]	A	G	2.989e^-4	1	INTRON CrzR
2R	8261123	2R_8261123_INS [dm3] 2R_12373618_INS [dm6]	T	TCAC	2.994e^-4	1	INTRON CG13160	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	9597376	3R_9597376_SNP [dm3] 3R_13771654_SNP [dm6]	G	T	2.998e^-4	1	UPSTREAM CG9297 DOWNSTREAM Cht5 INTRON CG9297	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	17625937	X_17625937_SNP [dm3] X_17731904_SNP [dm6]	C	G	3.005e^-4	1	INTRON CG42684
2R	15467140	2R_15467140_SNP [dm3] 2R_19579635_SNP [dm6]	G	A	3.007e^-4	1	INTRON sm
2L	11426898	2L_11426898_SNP [dm3] 2L_11426898_SNP [dm6]	C	T	3.008e^-4	1	INTERGENIC
3R	3617214	3R_3617214_SNP [dm3] 3R_7791492_SNP [dm6]	G	C	3.016e^-4	1	INTRON CG10086
3L	839306	3L_839306_SNP [dm3] 3L_839306_SNP [dm6]	G	A	3.021e^-4	1	SYNONYMOUS_CODING CG13887 UTR_3_PRIME CG13887 DOWNSTREAM CG13902
3R	25175439	3R_25175439_SNP [dm3] 3R_29349717_SNP [dm6]	G	A	3.022e^-4	1	INTERGENIC
2R	12573425	2R_12573425_INS [dm3] 2R_16685920_INS [dm6]	G	GG	3.026e^-4	1	INTRON CG30463
2L	4085812	2L_4085812_SNP [dm3] 2L_4085812_SNP [dm6]	G	C	3.029e^-4	1	UPSTREAM snoRNA:Me28S-C437 INTRON ed
2R	11765293	2R_11765293_SNP [dm3] 2R_15877788_SNP [dm6]	G	A	3.038e^-4	1	INTRON sli
2R	9106053	2R_9106053_SNP [dm3] 2R_13218548_SNP [dm6]	A	G	3.048e^-4	1	DOWNSTREAM CG4646 INTRON CG4630
2L	20603455	2L_20603455_DEL [dm3] 2L_20603455_DEL [dm6]	ACTTCTTTAA	A	3.059e^-4	1	DOWNSTREAM CG31677 INTRON CR44909
X	8946737	X_8946737_SNP [dm3] X_9052704_SNP [dm6]	A	G	3.060e^-4	1	SYNONYMOUS_CODING CG42388	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12345090	3L_12345090_DEL [dm3] 3L_12351990_DEL [dm6]	TAA	T	3.060e^-4	1	UPSTREAM CrzR INTERGENIC
2L	4517888	2L_4517888_SNP [dm3] 2L_4517888_SNP [dm6]	A	G	3.067e^-4	1	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6764102	2L_6764102_SNP [dm3] 2L_6764102_SNP [dm6]	A	G	3.068e^-4	1	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_sens
2L	10912500	2L_10912500_SNP [dm3] 2L_10912500_SNP [dm6]	G	A	3.068e^-4	1	INTERGENIC
2L	4513592	2L_4513592_SNP [dm3] 2L_4513592_SNP [dm6]	C	G	3.074e^-4	1	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6693714	X_6693714_SNP [dm3] X_6799681_SNP [dm6]	T	A	3.078e^-4	1	INTRON C3G
2L	13352864	2L_13352864_SNP [dm3] 2L_13352864_SNP [dm6]	G	A	3.121e^-4	1	SYNONYMOUS_CODING CG9395	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	19055737	X_19055737_SNP [dm3] X_19161704_SNP [dm6]	C	T	3.122e^-4	1	INTRON RhoGAP18B	TF binding site mE1_TFBS_inv
X	12484885	X_12484885_INS [dm3] X_12590852_INS [dm6]	T	TT	3.124e^-4	1	INTRON LIMK1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12834469	3L_12834469_INS [dm3] 3L_12841369_INS [dm6]	A	AA	3.134e^-4	1	INTRON CG10960
3R	14350130	3R_14350130_SNP [dm3] 3R_18524408_SNP [dm6]	A	G	3.144e^-4	1	INTRON fru
3R	6552655	3R_6552655_SNP [dm3] 3R_10726933_SNP [dm6]	A	T	3.153e^-4	1	INTERGENIC
2R	18232134	2R_18232134_SNP [dm3] 2R_22344629_SNP [dm6]	G	T	3.160e^-4	1	INTRON Liprin-gamma
2L	11052294	2L_11052294_SNP [dm3] 2L_11052294_SNP [dm6]	A	G	3.170e^-4	1	INTRON Samuel
3R	816915	3R_816915_SNP [dm3] 3R_4991193_SNP [dm6]	G	A	3.170e^-4	1	INTRON CG2022	TF binding site mE1_TFBS_cad
2R	20114983	2R_20114983_SNP [dm3] 2R_24227460_SNP [dm6]	C	G	3.170e^-4	1	INTRON CG30419
X	9224573	X_9224573_SNP [dm3] X_9330540_SNP [dm6]	A	C	3.179e^-4	1	UPSTREAM CG34450 DOWNSTREAM CG34449 INTRON CG34449
2L	10912352	2L_10912352_SNP [dm3] 2L_10912352_SNP [dm6]	A	C	3.181e^-4	1	INTERGENIC
3L	10343928	3L_10343928_SNP [dm3] 3L_10350828_SNP [dm6]	G	T	3.182e^-4	1	INTRON CR44327
X	16477887	X_16477887_SNP [dm3] X_16583854_SNP [dm6]	T	A	3.182e^-4	1	INTRON CanA-14F
X	16462918	X_16462918_SNP [dm3] X_16568885_SNP [dm6]	C	G	3.194e^-4	1	INTRON CanA-14F
3R	26400608	3R_26400608_SNP [dm3] 3R_30574886_SNP [dm6]	A	T	3.200e^-4	1	UTR_3_PRIME tmod INTRON tmod
2L	4528631	2L_4528631_SNP [dm3] 2L_4528631_SNP [dm6]	G	A	3.205e^-4	1	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	14429659	3R_14429659_INS [dm3] 3R_18603937_INS [dm6]	T	TT	3.207e^-4	1	INTRON qin & 1 other
X	12821915	X_12821915_SNP [dm3] X_12927882_SNP [dm6]	C	G	3.218e^-4	1	INTRON fne
3R	25529880	3R_25529880_SNP [dm3] 3R_29704158_SNP [dm6]	T	C	3.235e^-4	1	INTERGENIC
2L	11427126	2L_11427126_SNP [dm3] 2L_11427126_SNP [dm6]	C	T	3.243e^-4	1	INTERGENIC
3L	4212503	3L_4212503_SNP [dm3] 3L_4212503_SNP [dm6]	G	A	3.245e^-4	1	SYNONYMOUS_CODING Cpr64Ac UPSTREAM Cpr64Ab INTRON CG43367	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14071202	3R_14071202_SNP [dm3] 3R_18245480_SNP [dm6]	A	G	3.262e^-4	1	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12269967	3L_12269967_SNP [dm3] 3L_12276867_SNP [dm6]	T	C	3.263e^-4	1	UPSTREAM CG10426 INTRON CG4300	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	14071201	3R_14071201_SNP [dm3] 3R_18245479_SNP [dm6]	G	A	3.263e^-4	1	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	22763400	3R_22763400_SNP [dm3] 3R_26937678_SNP [dm6]	C	A	3.265e^-4	1	INTRON sda
X	17600021	X_17600021_SNP [dm3] X_17705988_SNP [dm6]	T	C	3.269e^-4	1	UTR_3_PRIME par-6
2L	13139173	2L_13139173_SNP [dm3] 2L_13139173_SNP [dm6]	G	T	3.270e^-4	1	INTERGENIC
2L	13139177	2L_13139177_SNP [dm3] 2L_13139177_SNP [dm6]	T	A	3.270e^-4	1	INTERGENIC
3L	8209861	3L_8209861_INS [dm3] 3L_8216761_INS [dm6]	A	ATGTACATA	3.271e^-4	1	DOWNSTREAM CG8012 INTERGENIC
X	4653191	X_4653191_SNP [dm3] X_4759158_SNP [dm6]	T	C	3.272e^-4	1	INTERGENIC
X	16430791	X_16430791_SNP [dm3] X_16536758_SNP [dm6]	T	C	3.273e^-4	1	INTERGENIC
3L	14388854	3L_14388854_SNP [dm3] 3L_14395754_SNP [dm6]	G	T	3.275e^-4	1	INTERGENIC
3L	15481365	3L_15481365_SNP [dm3] 3L_15488265_SNP [dm6]	C	T	3.280e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2R	18579063	2R_18579063_SNP [dm3] 2R_22691558_SNP [dm6]	T	C	3.283e^-4	1	DOWNSTREAM robo EXON CR44764	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11223371	2L_11223371_SNP [dm3] 2L_11223371_SNP [dm6]	T	G	3.297e^-4	1	INTRON ab
2L	17350091	2L_17350091_SNP [dm3] 2L_17350091_SNP [dm6]	A	T	3.297e^-4	1	INTERGENIC
3R	18483257	3R_18483257_SNP [dm3] 3R_22657535_SNP [dm6]	G	A	3.309e^-4	1	INTRON CG45058
3R	15740040	3R_15740040_SNP [dm3] 3R_19914318_SNP [dm6]	A	C	3.314e^-4	1	DOWNSTREAM CG42508 & 2 others INTERGENIC
2L	18012215	2L_18012215_SNP [dm3] 2L_18012215_SNP [dm6]	A	T	3.318e^-4	1	UPSTREAM rdo & 1 other INTERGENIC
2R	13674158	2R_13674158_SNP [dm3] 2R_17786653_SNP [dm6]	T	G	3.328e^-4	1	SYNONYMOUS_CODING aft
2R	18586461	2R_18586461_SNP [dm3] 2R_22698956_SNP [dm6]	C	T	3.328e^-4	1	INTRON robo	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17272610	2R_17272610_SNP [dm3] 2R_21385105_SNP [dm6]	A	G	3.342e^-4	1	SYNONYMOUS_CODING EfSec UPSTREAM CG10795	TF binding site mE1_TFBS_sens
2L	8466602	2L_8466602_SNP [dm3] 2L_8466602_SNP [dm6]	G	A	3.343e^-4	1	UTR_3_PRIME fu2 UPSTREAM d DOWNSTREAM fu2	TF binding site BDTNP1_TFBS_dl
2L	13139281	2L_13139281_SNP [dm3] 2L_13139281_SNP [dm6]	G	A	3.348e^-4	1	INTERGENIC
X	8339595	X_8339595_SNP [dm3] X_8445562_SNP [dm6]	C	A	3.352e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13139218	2L_13139218_SNP [dm3] 2L_13139218_SNP [dm6]	G	T	3.353e^-4	1	INTERGENIC
2R	17574137	2R_17574137_SNP [dm3] 2R_21686632_SNP [dm6]	C	T	3.355e^-4	1	DOWNSTREAM CG10306 INTRON Tbp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	16280330	3L_16280330_INS [dm3] 3L_16287230_INS [dm6]	T	TTCT	3.370e^-4	1	DOWNSTREAM CG13046 INTERGENIC
3R	23856556	3R_23856556_SNP [dm3] 3R_28030834_SNP [dm6]	G	A	3.372e^-4	1	SYNONYMOUS_CODING CG34362	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20801424	2R_20801424_SNP [dm3] 2R_24913901_SNP [dm6]	C	G	3.374e^-4	1	SYNONYMOUS_CODING NaCP60E UTR_3_PRIME NaCP60E	TF binding site mE1_TFBS_inv
2L	10912351	2L_10912351_SNP [dm3] 2L_10912351_SNP [dm6]	A	G	3.376e^-4	1	INTERGENIC
2L	12645150	2L_12645150_SNP [dm3] 2L_12645150_SNP [dm6]	A	C	3.381e^-4	1	INTRON Ref2
2R	7311185	2R_7311185_SNP [dm3] 2R_11423680_SNP [dm6]	A	G	3.381e^-4	1	INTRON Drip
3L	15693674	3L_15693674_SNP [dm3] 3L_15700574_SNP [dm6]	C	T	3.391e^-4	1	UPSTREAM comm2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	24383384	3R_24383384_SNP [dm3] 3R_28557662_SNP [dm6]	G	A	3.406e^-4	1	INTERGENIC
3R	17089606	3R_17089606_SNP [dm3] 3R_21263884_SNP [dm6]	C	T	3.408e^-4	1	DOWNSTREAM ETHR INTRON ETHR
X	5156834	X_5156834_SNP [dm3] X_5262801_SNP [dm6]	C	T	3.413e^-4	1	INTERGENIC
3R	12961037	3R_12961037_SNP [dm3] 3R_17135315_SNP [dm6]	C	T	3.422e^-4	1	UPSTREAM CG5246 DOWNSTREAM CG31267 INTERGENIC
3L	9751930	3L_9751930_SNP [dm3] 3L_9758830_SNP [dm6]	A	C	3.424e^-4	1	INTRON CG42268
3L	13162252	3L_13162252_INS [dm3] 3L_13169152_INS [dm6]	T	TGTGGTTTGTTTTCCCT...	3.425e^-4	1	INTERGENIC
3L	12837741	3L_12837741_SNP [dm3] 3L_12844641_SNP [dm6]	T	C	3.432e^-4	1	UTR_3_PRIME CG10948
X	12986656	X_12986656_SNP [dm3] X_13092623_SNP [dm6]	A	T	3.434e^-4	1	INTRON lic	TF binding site mE1_TFBS_cad
3L	1584381	3L_1584381_SNP [dm3] 3L_1584381_SNP [dm6]	G	A	3.436e^-4	1	INTRON CG13917
2L	5643569	2L_5643569_SNP [dm3] 2L_5643569_SNP [dm6]	T	A	3.458e^-4	1	INTRON CG31646
2R	16620690	2R_16620690_SNP [dm3] 2R_20733185_SNP [dm6]	G	A	3.460e^-4	1	INTRON dpr
X	15008482	X_15008482_SNP [dm3] X_15114449_SNP [dm6]	T	G	3.462e^-4	1	DOWNSTREAM Rab3-GEF INTRON Cyp4s3
2L	4708442	2L_4708442_SNP [dm3] 2L_4708442_SNP [dm6]	G	C	3.463e^-4	1	INTRON CG34351
3L	885298	3L_885298_SNP [dm3] 3L_885298_SNP [dm6]	G	A	3.465e^-4	1	INTRON CG32479
3R	14071191	3R_14071191_SNP [dm3] 3R_18245469_SNP [dm6]	C	A	3.466e^-4	1	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	4163650	3L_4163650_SNP [dm3] 3L_4163650_SNP [dm6]	A	G	3.469e^-4	1	INTRON mas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3249266	2L_3249266_SNP [dm3] 2L_3249266_SNP [dm6]	G	A	3.478e^-4	1	INTERGENIC
3L	4217860	3L_4217860_SNP [dm3] 3L_4217860_SNP [dm6]	C	T	3.478e^-4	1	SYNONYMOUS_CODING CG43367
2L	11510874	2L_11510874_SNP [dm3] 2L_11510874_SNP [dm6]	A	G	3.483e^-4	1	INTRON CG6509	TF binding site mE1_TFBS_cad
3L	8039184	3L_8039184_SNP [dm3] 3L_8046084_SNP [dm6]	T	A	3.484e^-4	1	INTRON nmo
2L	10474464	2L_10474464_SNP [dm3] 2L_10474464_SNP [dm6]	A	C	3.500e^-4	1	UPSTREAM RluA-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	329786	3L_329786_SNP [dm3] 3L_329786_SNP [dm6]	G	A	3.501e^-4	1	DOWNSTREAM mthl9 INTRON Ptpmeg	TF binding site BDTNP1_TFBS_dl
2R	17846134	2R_17846134_SNP [dm3] 2R_21958629_SNP [dm6]	C	G	3.501e^-4	1	INTERGENIC
2L	6179940	2L_6179940_SNP [dm3] 2L_6179940_SNP [dm6]	C	T	3.507e^-4	1	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14069334	3R_14069334_SNP [dm3] 3R_18243612_SNP [dm6]	C	A	3.532e^-4	1	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
2R	3630339	2R_3630339_SNP [dm3] 2R_7742834_SNP [dm6]	G	A	3.538e^-4	1	UPSTREAM CG30497 & 1 other INTRON CG30497 & 1 other
X	5340409	X_5340409_DEL [dm3] X_5446376_DEL [dm6]	ACAAG	A	3.542e^-4	1	UPSTREAM SPR INTERGENIC
2R	19827689	2R_19827689_INS [dm3] 2R_23940166_INS [dm6]	T	TTGGTACAAATAT...	3.543e^-4	1	UPSTREAM Tal & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	19470378	3R_19470378_SNP [dm3] 3R_23644656_SNP [dm6]	G	A	3.553e^-4	1	INTRON CG31145
2L	5789717	2L_5789717_SNP [dm3] 2L_5789717_SNP [dm6]	C	T	3.556e^-4	1	INTRON CG9171	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	3623272	2R_3623272_INS [dm3] 2R_7735767_INS [dm6]	A	AA	3.556e^-4	1	UPSTREAM CG18812 INTERGENIC
2L	10912575	2L_10912575_SNP [dm3] 2L_10912575_SNP [dm6]	G	A	3.561e^-4	1	INTERGENIC
3L	8722424	3L_8722424_SNP [dm3] 3L_8729324_SNP [dm6]	C	T	3.562e^-4	1	UPSTREAM Cp19 DOWNSTREAM Cp15 INTERGENIC
3R	9659079	3R_9659079_SNP [dm3] 3R_13833357_SNP [dm6]	A	T	3.565e^-4	1	DOWNSTREAM Nsf2 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	4163629	3L_4163629_SNP [dm3] 3L_4163629_SNP [dm6]	A	G	3.580e^-4	1	INTRON mas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10990615	3L_10990615_SNP [dm3] 3L_10997515_SNP [dm6]	G	A	3.582e^-4	1	INTRON klu	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	2397560	2R_2397560_INS [dm3] 2R_6510055_INS [dm6]	G	GA	3.582e^-4	1	INTRON jing EXON CR45127
2R	2516052	2R_2516052_SNP [dm3] 2R_6628547_SNP [dm6]	G	T	3.593e^-4	1	INTRON Vha16-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	5433972	3R_5433972_SNP [dm3] 3R_9608250_SNP [dm6]	G	T	3.595e^-4	1	INTRON CG8312	TF binding site BDTNP1_TFBS_hb
2L	7211255	2L_7211255_SNP [dm3] 2L_7211255_SNP [dm6]	C	A	3.611e^-4	1	INTRON CG13784
2R	8352074	2R_8352074_SNP [dm3] 2R_12464569_SNP [dm6]	C	A	3.613e^-4	1	SYNONYMOUS_CODING Lac	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5779873	2L_5779873_SNP [dm3] 2L_5779873_SNP [dm6]	A	G	3.613e^-4	1	INTRON CG9171	TF binding site BDTNP1_TFBS_twi
2L	12339554	2L_12339554_SNP [dm3] 2L_12339554_SNP [dm6]	C	A	3.615e^-4	1	DOWNSTREAM CG31862 INTERGENIC
2L	17980024	2L_17980024_SNP [dm3] 2L_17980024_SNP [dm6]	T	C	3.618e^-4	1	SYNONYMOUS_CODING btv
3R	18193004	3R_18193004_INS [dm3] 3R_22367282_INS [dm6]	A	AGATGAAGTCCAACCTAA...	3.622e^-4	1	SPLICE_SITE_REGION CG5380 UPSTREAM PyK & 1 other INTRON CG5380	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	13354495	2R_13354495_SNP [dm3] 2R_17466990_SNP [dm6]	G	A	3.624e^-4	1	SYNONYMOUS_CODING Tes	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7859361	3L_7859361_SNP [dm3] 3L_7866261_SNP [dm6]	T	A	3.627e^-4	1	INTRON Pdp1	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	27513199	3R_27513199_SNP [dm3] 3R_31687477_SNP [dm6]	C	T	3.629e^-4	1	DOWNSTREAM CR45564 INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site mE1_TFBS_chinmo
2L	7214076	2L_7214076_SNP [dm3] 2L_7214076_SNP [dm6]	G	A	3.639e^-4	1	INTRON CG13784	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18206084	2L_18206084_SNP [dm3] 2L_18206084_SNP [dm6]	T	C	3.651e^-4	1	INTRON CG42750
2L	5568433	2L_5568433_SNP [dm3] 2L_5568433_SNP [dm6]	A	T	3.665e^-4	1	INTERGENIC
3L	7715586	3L_7715586_SNP [dm3] 3L_7722486_SNP [dm6]	T	G	3.670e^-4	1	SYNONYMOUS_CODING CG7457 INTRON CG32373
3R	4216009	3R_4216009_SNP [dm3] 3R_8390287_SNP [dm6]	T	G	3.685e^-4	1	INTRON CG45263	TF binding site BDTNP1_TFBS_dl
2R	19223819	2R_19223819_SNP [dm3] 2R_23336296_SNP [dm6]	A	C	3.697e^-4	1	INTERGENIC
2L	11225528	2L_11225528_SNP [dm3] 2L_11225528_SNP [dm6]	T	G	3.705e^-4	1	INTRON ab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18612860	2L_18612860_SNP [dm3] 2L_18612860_SNP [dm6]	T	A	3.706e^-4	1	UPSTREAM Atac2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2L	18612861	2L_18612861_INS [dm3] 2L_18612861_INS [dm6]	A	AT	3.706e^-4	1	UPSTREAM Atac2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2L	2390898	2L_2390898_SNP [dm3] 2L_2390898_SNP [dm6]	A	T	3.710e^-4	1	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
3R	4101623	3R_4101623_DEL [dm3] 3R_8275901_DEL [dm6]	AA	A	3.716e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2327081	2L_2327081_SNP [dm3] 2L_2327081_SNP [dm6]	G	C	3.721e^-4	1	INTRON CG9967 & 1 other	TF binding site mE1_TFBS_chinmo
2L	13041599	2L_13041599_SNP [dm3] 2L_13041599_SNP [dm6]	T	C	3.725e^-4	1	INTRON CG9932
3R	18129307	3R_18129307_SNP [dm3] 3R_22303585_SNP [dm6]	A	C	3.725e^-4	1	NON_SYNONYMOUS_CODING CG7084
3R	8527507	3R_8527507_SNP [dm3] 3R_12701785_SNP [dm6]	G	T	3.729e^-4	1	INTRON Past1
3L	10437269	3L_10437269_SNP [dm3] 3L_10444169_SNP [dm6]	C	A	3.730e^-4	1	INTERGENIC
2L	7888679	2L_7888679_SNP [dm3] 2L_7888679_SNP [dm6]	A	T	3.735e^-4	1	SYNONYMOUS_CODING Spn28Da DOWNSTREAM Spn28Db	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13139191	2L_13139191_SNP [dm3] 2L_13139191_SNP [dm6]	T	C	3.736e^-4	1	INTERGENIC
2L	5780277	2L_5780277_SNP [dm3] 2L_5780277_SNP [dm6]	A	T	3.742e^-4	1	INTRON CG9171	TF binding site BDTNP1_TFBS_twi
3R	10579317	3R_10579317_SNP [dm3] 3R_14753595_SNP [dm6]	C	T	3.743e^-4	1	SYNONYMOUS_CODING CG7362 INTRON jvl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17055454	3R_17055454_SNP [dm3] 3R_21229732_SNP [dm6]	T	C	3.759e^-4	1	DOWNSTREAM e & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
X	6701269	X_6701269_SNP [dm3] X_6807236_SNP [dm6]	G	A	3.760e^-4	1	SYNONYMOUS_CODING pod1
2L	8936807	2L_8936807_SNP [dm3] 2L_8936807_SNP [dm6]	T	C	3.775e^-4	1	UPSTREAM Tsp29Fb DOWNSTREAM Tsp29Fa INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18612969	2L_18612969_MNP [dm3] 2L_18612969_MNP [dm6]	CGAT	TAGA	3.780e^-4	1	UPSTREAM Atac2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	14336662	X_14336662_SNP [dm3] X_14442629_SNP [dm6]	C	G	3.785e^-4	1	INTRON dpr8
2L	10912445	2L_10912445_SNP [dm3] 2L_10912445_SNP [dm6]	T	A	3.786e^-4	1	INTERGENIC
2R	18934410	2R_18934410_SNP [dm3] 2R_23046887_SNP [dm6]	C	T	3.796e^-4	1	SYNONYMOUS_CODING twi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	22172348	3R_22172348_SNP [dm3] 3R_26346626_SNP [dm6]	A	G	3.796e^-4	1	INTRON CG33970	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	5988690	3L_5988690_DEL [dm3] 3L_5995590_DEL [dm6]	GCGAGTGGGAGGACTTAAAC...	G	3.798e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	1730955	2L_1730955_SNP [dm3] 2L_1730955_SNP [dm6]	A	G	3.799e^-4	1	UTR_3_PRIME CG31937 DOWNSTREAM CG17652	TF binding site mE1_TFBS_cad
3R	25341014	3R_25341014_SNP [dm3] 3R_29515292_SNP [dm6]	T	C	3.801e^-4	1	UPSTREAM CG2014 INTERGENIC
2R	16620637	2R_16620637_SNP [dm3] 2R_20733132_SNP [dm6]	G	T	3.813e^-4	1	INTRON dpr
3R	10291896	3R_10291896_SNP [dm3] 3R_14466174_SNP [dm6]	A	C	3.822e^-4	1	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14350093	3R_14350093_SNP [dm3] 3R_18524371_SNP [dm6]	A	C	3.826e^-4	1	INTRON fru
2L	4513517	2L_4513517_SNP [dm3] 2L_4513517_SNP [dm6]	T	G	3.826e^-4	1	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5764099	2L_5764099_SNP [dm3] 2L_5764099_SNP [dm6]	C	T	3.830e^-4	1	SYNONYMOUS_CODING obst-E INTRON obst-E	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9640777	2L_9640777_SNP [dm3] 2L_9640777_SNP [dm6]	A	C	3.835e^-4	1	INTRON Apoltp
2R	17113466	2R_17113466_SNP [dm3] 2R_21225961_SNP [dm6]	G	A	3.836e^-4	1	INTRON ASPP
X	10499777	X_10499777_SNP [dm3] X_10605744_SNP [dm6]	T	A	3.840e^-4	1	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18508984	2L_18508984_SNP [dm3] 2L_18508984_SNP [dm6]	T	C	3.843e^-4	1	UPSTREAM CG10178 INTERGENIC
2R	15467358	2R_15467358_SNP [dm3] 2R_19579853_SNP [dm6]	C	G	3.843e^-4	1	INTRON sm
X	12485733	X_12485733_SNP [dm3] X_12591700_SNP [dm6]	G	T	3.848e^-4	1	DOWNSTREAM CG1824 INTRON LIMK1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_zfh1
2L	4523559	2L_4523559_SNP [dm3] 2L_4523559_SNP [dm6]	G	C	3.853e^-4	1	INTRON dp
2L	7085305	2L_7085305_SNP [dm3] 2L_7085305_SNP [dm6]	G	T	3.853e^-4	1	UPSTREAM Pvf2 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	6027869	3L_6027869_SNP [dm3] 3L_6034769_SNP [dm6]	T	C	3.858e^-4	1	UPSTREAM yip7 & 1 other INTERGENIC
3R	17952380	3R_17952380_SNP [dm3] 3R_22126658_SNP [dm6]	G	A	3.858e^-4	1	INTRON CG42390
2L	11427360	2L_11427360_SNP [dm3] 2L_11427360_SNP [dm6]	C	T	3.860e^-4	1	INTERGENIC
2R	16046572	2R_16046572_SNP [dm3] 2R_20159067_SNP [dm6]	C	T	3.864e^-4	1	INTERGENIC
2L	3379977	2L_3379977_SNP [dm3] 2L_3379977_SNP [dm6]	A	T	3.873e^-4	1	INTERGENIC
3R	3740447	3R_3740447_SNP [dm3] 3R_7914725_SNP [dm6]	T	A	3.881e^-4	1	INTRON CG2678	TF binding site BDTNP1_TFBS_da
3R	6539192	3R_6539192_SNP [dm3] 3R_10713470_SNP [dm6]	C	T	3.883e^-4	1	INTERGENIC
3R	8901115	3R_8901115_SNP [dm3] 3R_13075393_SNP [dm6]	C	T	3.883e^-4	1	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	14596256	3R_14596256_SNP [dm3] 3R_18770534_SNP [dm6]	T	C	3.886e^-4	1	INTRON CG7720
3L	14388884	3L_14388884_SNP [dm3] 3L_14395784_SNP [dm6]	T	C	3.890e^-4	1	INTERGENIC
3L	18346616	3L_18346616_SNP [dm3] 3L_18353516_SNP [dm6]	G	C	3.896e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	18685080	3L_18685080_SNP [dm3] 3L_18691980_SNP [dm6]	A	T	3.897e^-4	1	INTERGENIC
2L	4445396	2L_4445396_SNP [dm3] 2L_4445396_SNP [dm6]	G	A	3.908e^-4	1	SYNONYMOUS_CODING Elp3 UPSTREAM morgue	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23458546	3R_23458546_SNP [dm3] 3R_27632824_SNP [dm6]	G	T	3.919e^-4	1	SYNONYMOUS_CODING Tusp	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12837421	3L_12837421_SNP [dm3] 3L_12844321_SNP [dm6]	C	T	3.920e^-4	1	UTR_3_PRIME CG10948
2L	10479950	2L_10479950_SNP [dm3] 2L_10479950_SNP [dm6]	G	A	3.922e^-4	1	INTRON RluA-2	TF binding site BDTNP1_TFBS_dl
3R	2762418	3R_2762418_SNP [dm3] 3R_6936696_SNP [dm6]	G	T	3.938e^-4	1	INTRON Antp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18932435	2L_18932435_SNP [dm3] 2L_18932435_SNP [dm6]	T	C	3.939e^-4	1	INTRON ssp3
2L	3283035	2L_3283035_SNP [dm3] 2L_3283035_SNP [dm6]	G	A	3.948e^-4	1	INTERGENIC
3L	3876386	3L_3876386_SNP [dm3] 3L_3876386_SNP [dm6]	A	G	3.951e^-4	1	INTERGENIC
3L	4164070	3L_4164070_SNP [dm3] 3L_4164070_SNP [dm6]	T	G	3.968e^-4	1	SYNONYMOUS_CODING mas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2406718	2R_2406718_SNP [dm3] 2R_6519213_SNP [dm6]	A	T	3.978e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	17315184	2R_17315184_SNP [dm3] 2R_21427679_SNP [dm6]	G	A	3.979e^-4	1	INTRON Sdc
3R	14254360	3R_14254360_SNP [dm3] 3R_18428638_SNP [dm6]	T	G	3.985e^-4	1	UTR_3_PRIME fru INTRON fru
X	21889592	X_21889592_SNP [dm3] X_22487756_SNP [dm6]	G	C	3.987e^-4	1	SYNONYMOUS_CODING l_1_G0196 DOWNSTREAM CR43493 & 1 other
3L	8039177	3L_8039177_SNP [dm3] 3L_8046077_SNP [dm6]	T	C	3.988e^-4	1	INTRON nmo
3L	12336594	3L_12336594_SNP [dm3] 3L_12343494_SNP [dm6]	A	T	3.997e^-4	1	INTRON CrzR
3L	4381436	3L_4381436_SNP [dm3] 3L_4381436_SNP [dm6]	C	T	3.999e^-4	1	SYNONYMOUS_CODING CG32240
3L	11224177	3L_11224177_SNP [dm3] 3L_11231077_SNP [dm6]	G	T	4.008e^-4	1	DOWNSTREAM CR45405 & 1 other INTERGENIC
2L	17977458	2L_17977458_SNP [dm3] 2L_17977458_SNP [dm6]	G	A	4.010e^-4	1	SYNONYMOUS_CODING btv
X	14566468	X_14566468_SNP [dm3] X_14672435_SNP [dm6]	C	T	4.011e^-4	1	INTERGENIC
3L	3796116	3L_3796116_SNP [dm3] 3L_3796116_SNP [dm6]	G	A	4.023e^-4	1	INTRON CG32264
3R	12847068	3R_12847068_SNP [dm3] 3R_17021346_SNP [dm6]	T	A	4.032e^-4	1	UPSTREAM AdSL INTRON Pxd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	17814497	3L_17814497_SNP [dm3] 3L_17821397_SNP [dm6]	A	G	4.054e^-4	1	SYNONYMOUS_CODING Ir75c
3L	2805669	3L_2805669_SNP [dm3] 3L_2805669_SNP [dm6]	C	T	4.055e^-4	1	INTRON CG43444
2L	10467217	2L_10467217_SNP [dm3] 2L_10467217_SNP [dm6]	T	G	4.065e^-4	1	INTRON RluA-1
2L	12600870	2L_12600870_SNP [dm3] 2L_12600870_SNP [dm6]	C	G	4.067e^-4	1	INTRON nub
3L	7721230	3L_7721230_SNP [dm3] 3L_7728130_SNP [dm6]	G	A	4.067e^-4	1	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_HSA
2R	5975921	2R_5975921_SNP [dm3] 2R_10088416_SNP [dm6]	C	A	4.069e^-4	1	INTRON CG2269
2R	17834303	2R_17834303_SNP [dm3] 2R_21946798_SNP [dm6]	A	G	4.071e^-4	1	DOWNSTREAM Fili INTERGENIC
3L	18321611	3L_18321611_SNP [dm3] 3L_18328511_SNP [dm6]	A	G	4.082e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3056968	3L_3056968_SNP [dm3] 3L_3056968_SNP [dm6]	T	A	4.087e^-4	1	INTRON CG32486	TF binding site mE1_TFBS_inv
X	3214942	X_3214942_SNP [dm3] X_3320909_SNP [dm6]	T	C	4.088e^-4	1	INTRON dnc & 1 other
2L	11473046	2L_11473046_SNP [dm3] 2L_11473046_SNP [dm6]	T	G	4.088e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	8901459	3R_8901459_SNP [dm3] 3R_13075737_SNP [dm6]	A	G	4.092e^-4	1	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	9640698	2L_9640698_SNP [dm3] 2L_9640698_SNP [dm6]	A	T	4.099e^-4	1	INTRON Apoltp
2L	11478315	2L_11478315_SNP [dm3] 2L_11478315_SNP [dm6]	T	C	4.118e^-4	1	INTERGENIC
2L	11223973	2L_11223973_SNP [dm3] 2L_11223973_SNP [dm6]	A	C	4.123e^-4	1	INTRON ab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_sens
X	5636501	X_5636501_SNP [dm3] X_5742468_SNP [dm6]	G	A	4.125e^-4	1	SYNONYMOUS_CODING IntS6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24774961	3R_24774961_SNP [dm3] 3R_28949239_SNP [dm6]	T	A	4.126e^-4	1	INTRON CG14521
3R	18512457	3R_18512457_SNP [dm3] 3R_22686735_SNP [dm6]	G	T	4.129e^-4	1	UPSTREAM CG17625 & 1 other DOWNSTREAM wfs1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
2R	15382028	2R_15382028_SNP [dm3] 2R_19494523_SNP [dm6]	C	T	4.150e^-4	1	UTR_3_PRIME hpo DOWNSTREAM Rep
3L	7314013	3L_7314013_SNP [dm3] 3L_7320913_SNP [dm6]	T	G	4.159e^-4	1	SYNONYMOUS_CODING CG8607 DOWNSTREAM RhoGEF4	TF binding site mE1_TFBS_sens
3L	7153408	3L_7153408_SNP [dm3] 3L_7160308_SNP [dm6]	G	T	4.169e^-4	1	UTR_3_PRIME Dscam2
2L	4523206	2L_4523206_SNP [dm3] 2L_4523206_SNP [dm6]	C	T	4.173e^-4	1	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17813443	3L_17813443_SNP [dm3] 3L_17820343_SNP [dm6]	A	G	4.179e^-4	1	UPSTREAM Ir75b DOWNSTREAM Ir75c INTERGENIC
2L	5572833	2L_5572833_SNP [dm3] 2L_5572833_SNP [dm6]	C	A	4.186e^-4	1	INTERGENIC
3R	16570028	3R_16570028_SNP [dm3] 3R_20744306_SNP [dm6]	G	T	4.200e^-4	1	SYNONYMOUS_CODING CG31200 UPSTREAM CG31199 INTRON CG42322	TF binding site mE1_TFBS_cad
2L	2390848	2L_2390848_SNP [dm3] 2L_2390848_SNP [dm6]	A	T	4.203e^-4	1	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
X	3025792	X_3025792_SNP [dm3] X_3131759_SNP [dm6]	G	C	4.206e^-4	1	SYNONYMOUS_CODING kirre
3R	14429580	3R_14429580_SNP [dm3] 3R_18603858_SNP [dm6]	A	G	4.206e^-4	1	INTRON qin & 1 other
3R	14070581	3R_14070581_SNP [dm3] 3R_18244859_SNP [dm6]	C	A	4.208e^-4	1	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	16480253	X_16480253_DEL [dm3] X_16586220_DEL [dm6]	TA	T	4.212e^-4	1	INTRON CanA-14F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14389434	3L_14389434_SNP [dm3] 3L_14396334_SNP [dm6]	T	C	4.214e^-4	1	INTERGENIC
3R	10303208	3R_10303208_SNP [dm3] 3R_14477486_SNP [dm6]	G	A	4.216e^-4	1	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	1895298	3L_1895298_SNP [dm3] 3L_1895298_SNP [dm6]	A	C	4.225e^-4	1	SYNONYMOUS_CODING CG1887
2R	17872008	2R_17872008_SNP [dm3] 2R_21984503_SNP [dm6]	C	T	4.234e^-4	1	INTERGENIC
3R	8092016	3R_8092016_SNP [dm3] 3R_12266294_SNP [dm6]	T	A	4.238e^-4	1	INTRON svp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	19887853	2R_19887853_SNP [dm3] 2R_24000330_SNP [dm6]	G	C	4.240e^-4	1	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19887870	2R_19887870_SNP [dm3] 2R_24000347_SNP [dm6]	G	A	4.240e^-4	1	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5984089	3L_5984089_SNP [dm3] 3L_5990989_SNP [dm6]	G	C	4.246e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	9868363	X_9868363_SNP [dm3] X_9974330_SNP [dm6]	A	T	4.249e^-4	1	INTRON CG43386
3L	837662	3L_837662_SNP [dm3] 3L_837662_SNP [dm6]	A	C	4.270e^-4	1	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	10718684	3L_10718684_SNP [dm3] 3L_10725584_SNP [dm6]	C	T	4.271e^-4	1	INTERGENIC
3L	3796121	3L_3796121_SNP [dm3] 3L_3796121_SNP [dm6]	G	T	4.274e^-4	1	INTRON CG32264
X	21889694	X_21889694_SNP [dm3] X_22487858_SNP [dm6]	G	A	4.283e^-4	1	DOWNSTREAM Cp110 INTRON l_1_G0196 EXON CR43493
3L	7933454	3L_7933454_SNP [dm3] 3L_7940354_SNP [dm6]	T	C	4.284e^-4	1	INTERGENIC
2L	10539782	2L_10539782_SNP [dm3] 2L_10539782_SNP [dm6]	A	T	4.286e^-4	1	INTERGENIC
3R	8087656	3R_8087656_SNP [dm3] 3R_12261934_SNP [dm6]	A	G	4.291e^-4	1	DOWNSTREAM CG44038 INTRON CG44037 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Kr
2L	9307388	2L_9307388_SNP [dm3] 2L_9307388_SNP [dm6]	T	G	4.295e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	11335093	X_11335093_SNP [dm3] X_11441060_SNP [dm6]	C	A	4.296e^-4	1	INTRON Evi5
2R	18064445	2R_18064445_SNP [dm3] 2R_22176940_SNP [dm6]	A	G	4.297e^-4	1	SYNONYMOUS_CODING CG6758 UPSTREAM CR45151 DOWNSTREAM CG11170	TF binding site mE1_TFBS_chinmo
2L	6211313	2L_6211313_INS [dm3] 2L_6211313_INS [dm6]	C	CTCACACTGC	4.300e^-4	1	DOWNSTREAM CG34380 INTERGENIC
2R	15189110	2R_15189110_SNP [dm3] 2R_19301605_SNP [dm6]	G	T	4.302e^-4	1	INTRON Tab2	TF binding site mE1_TFBS_inv
2L	2858582	2L_2858582_DEL [dm3] 2L_2858582_DEL [dm6]	ACGAGATTTGTT...	A	4.310e^-4	1	INTRON CG2991	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8558451	2L_8558451_SNP [dm3] 2L_8558451_SNP [dm6]	G	A	4.317e^-4	1	INTRON Sema-1a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18004292	2L_18004292_SNP [dm3] 2L_18004292_SNP [dm6]	A	T	4.320e^-4	1	DOWNSTREAM CR44605 INTERGENIC
3R	26054442	3R_26054442_INS [dm3] 3R_30228720_INS [dm6]	A	AGACA	4.321e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2L	7665554	2L_7665554_SNP [dm3] 2L_7665554_SNP [dm6]	A	C	4.328e^-4	1	UPSTREAM Myo28B1 INTRON Slob
3L	23229879	3L_23229879_SNP [dm3] 3L_23236779_SNP [dm6]	T	C	4.329e^-4	1	INTRON nAChRalpha4	transposable element FlyBase
X	8947840	X_8947840_SNP [dm3] X_9053807_SNP [dm6]	A	T	4.329e^-4	1	UTR_3_PRIME CG42388 DOWNSTREAM CG42388 & 1 other
3R	4472957	3R_4472957_SNP [dm3] 3R_8647235_SNP [dm6]	G	T	4.331e^-4	1	UTR_3_PRIME Mkk4 DOWNSTREAM Mkk4
2R	8251385	2R_8251385_SNP [dm3] 2R_12363880_SNP [dm6]	G	T	4.333e^-4	1	DOWNSTREAM CG30043 EXON CR33013	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16795723	3R_16795723_SNP [dm3] 3R_20970001_SNP [dm6]	A	G	4.334e^-4	1	INTRON Atpalpha
2L	17979955	2L_17979955_SNP [dm3] 2L_17979955_SNP [dm6]	T	C	4.340e^-4	1	SYNONYMOUS_CODING btv
3R	15141936	3R_15141936_SNP [dm3] 3R_19316214_SNP [dm6]	C	A	4.341e^-4	1	INTRON Dl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	15327854	2L_15327854_SNP [dm3] 2L_15327854_SNP [dm6]	G	C	4.354e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	18730777	3L_18730777_SNP [dm3] 3L_18737677_SNP [dm6]	T	A	4.355e^-4	1	INTERGENIC
2L	7085317	2L_7085317_SNP [dm3] 2L_7085317_SNP [dm6]	C	T	4.355e^-4	1	UPSTREAM Pvf2 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	15467492	2R_15467492_SNP [dm3] 2R_19579987_SNP [dm6]	G	A	4.361e^-4	1	INTRON sm
2R	1002599	2R_1002599_SNP [dm3] 2R_5115094_SNP [dm6]	G	C	4.373e^-4	1	INTERGENIC	transposable element FlyBase
2L	9307391	2L_9307391_SNP [dm3] 2L_9307391_SNP [dm6]	C	A	4.380e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	11363566	3L_11363566_INS [dm3] 3L_11370466_INS [dm6]	A	ATTTAATAGA	4.389e^-4	1	INTERGENIC
2L	17053125	2L_17053125_SNP [dm3] 2L_17053125_SNP [dm6]	C	T	4.391e^-4	1	INTERGENIC
2L	10959193	2L_10959193_SNP [dm3] 2L_10959193_SNP [dm6]	C	T	4.415e^-4	1	INTRON dpr2
X	11357097	X_11357097_SNP [dm3] X_11463064_SNP [dm6]	C	T	4.433e^-4	1	INTRON CG43155
3L	12169396	3L_12169396_SNP [dm3] 3L_12176296_SNP [dm6]	C	T	4.440e^-4	1	UPSTREAM Rh7 INTERGENIC
2R	2689584	2R_2689584_SNP [dm3] 2R_6802079_SNP [dm6]	C	T	4.447e^-4	1	INTERGENIC
X	3214549	X_3214549_INS [dm3] X_3320516_INS [dm6]	G	GA	4.453e^-4	1	INTRON dnc & 1 other
3R	17055483	3R_17055483_SNP [dm3] 3R_21229761_SNP [dm6]	T	G	4.462e^-4	1	DOWNSTREAM e & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	10178989	2L_10178989_SNP [dm3] 2L_10178989_SNP [dm6]	T	A	4.466e^-4	1	INTRON CG44153
2R	3573441	2R_3573441_SNP [dm3] 2R_7685936_SNP [dm6]	A	C	4.474e^-4	1	INTRON CG1399
2R	18007446	2R_18007446_SNP [dm3] 2R_22119941_SNP [dm6]	T	C	4.479e^-4	1	INTRON Vrp1
3L	1057754	3L_1057754_SNP [dm3] 3L_1057754_SNP [dm6]	T	G	4.489e^-4	1	INTRON bab1
3R	9531809	3R_9531809_SNP [dm3] 3R_13706087_SNP [dm6]	A	C	4.497e^-4	1	UPSTREAM Adgf-D & 1 other INTERGENIC
2L	12016247	2L_12016247_SNP [dm3] 2L_12016247_SNP [dm6]	A	G	4.497e^-4	1	SYNONYMOUS_CODING CG6734
X	5340396	X_5340396_SNP [dm3] X_5446363_SNP [dm6]	A	G	4.504e^-4	1	UPSTREAM SPR INTERGENIC
X	5747410	X_5747410_SNP [dm3] X_5853377_SNP [dm6]	C	G	4.517e^-4	1	UPSTREAM CG43136 INTERGENIC
2L	7227555	2L_7227555_SNP [dm3] 2L_7227555_SNP [dm6]	T	A	4.519e^-4	1	UPSTREAM CG43799 INTRON Ndae1	TF binding site mE1_TFBS_HSA
2L	1576888	2L_1576888_SNP [dm3] 2L_1576888_SNP [dm6]	T	G	4.520e^-4	1	INTRON haf
X	13502131	X_13502131_DEL [dm3] X_13608098_DEL [dm6]	TT	G	4.522e^-4	1	INTRON CG11178	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	12861617	X_12861617_SNP [dm3] X_12967584_SNP [dm6]	C	A	4.526e^-4	1	UPSTREAM Mur11Da INTERGENIC
3L	10989495	3L_10989495_SNP [dm3] 3L_10996395_SNP [dm6]	A	G	4.526e^-4	1	INTRON klu
3L	13175477	3L_13175477_SNP [dm3] 3L_13182377_SNP [dm6]	C	G	4.527e^-4	1	INTERGENIC
3L	3719079	3L_3719079_SNP [dm3] 3L_3719079_SNP [dm6]	C	T	4.535e^-4	1	INTRON CG32264	TF binding site mE1_TFBS_cad
3L	2621625	3L_2621625_SNP [dm3] 3L_2621625_SNP [dm6]	G	A	4.548e^-4	1	INTRON Pxn
3R	8567050	3R_8567050_SNP [dm3] 3R_12741328_SNP [dm6]	G	A	4.558e^-4	1	UTR_3_PRIME CG5724 DOWNSTREAM CG5999
3L	7739485	3L_7739485_SNP [dm3] 3L_7746385_SNP [dm6]	G	A	4.562e^-4	1	UPSTREAM CG13685 INTRON CG32373
2L	744272	2L_744272_SNP [dm3] 2L_744272_SNP [dm6]	C	T	4.565e^-4	1	UTR_5_PRIME Eaat2
3L	4148445	3L_4148445_SNP [dm3] 3L_4148445_SNP [dm6]	C	T	4.574e^-4	1	UPSTREAM CG1299 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	7983643	3L_7983643_SNP [dm3] 3L_7990543_SNP [dm6]	G	T	4.575e^-4	1	INTRON nmo
3R	26566472	3R_26566472_SNP [dm3] 3R_30740750_SNP [dm6]	T	A	4.591e^-4	1	INTERGENIC
2L	15327524	2L_15327524_SNP [dm3] 2L_15327524_SNP [dm6]	T	A	4.592e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	3217576	X_3217576_SNP [dm3] X_3323543_SNP [dm6]	G	A	4.593e^-4	1	INTRON CR44886 & 1 other
2R	17574178	2R_17574178_SNP [dm3] 2R_21686673_SNP [dm6]	G	A	4.597e^-4	1	SYNONYMOUS_CODING Tbp DOWNSTREAM CG10306	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	4101691	3R_4101691_SNP [dm3] 3R_8275969_SNP [dm6]	A	G	4.601e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	7363785	2L_7363785_SNP [dm3] 2L_7363785_SNP [dm6]	T	A	4.601e^-4	1	INTRON Wnt10
3L	2331320	3L_2331320_SNP [dm3] 3L_2331320_SNP [dm6]	A	G	4.610e^-4	1	INTRON MsR1
2L	2806798	2L_2806798_SNP [dm3] 2L_2806798_SNP [dm6]	C	G	4.610e^-4	1	INTRON daw
X	1979959	X_1979959_SNP [dm3] X_2085926_SNP [dm6]	T	G	4.613e^-4	1	INTRON Unc-76	TF binding site mE1_TFBS_chinmo
2R	16131913	2R_16131913_SNP [dm3] 2R_20244408_SNP [dm6]	G	A	4.634e^-4	1	SYNONYMOUS_CODING CG11208	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	3544852	3L_3544852_SNP [dm3] 3L_3544852_SNP [dm6]	T	C	4.636e^-4	1	UPSTREAM Eip63E INTRON Eip63E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	2390833	2L_2390833_SNP [dm3] 2L_2390833_SNP [dm6]	C	T	4.645e^-4	1	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
2L	2390850	2L_2390850_SNP [dm3] 2L_2390850_SNP [dm6]	C	T	4.645e^-4	1	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
3R	24382496	3R_24382496_SNP [dm3] 3R_28556774_SNP [dm6]	C	G	4.646e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19086915	2R_19086915_SNP [dm3] 2R_23199392_SNP [dm6]	T	C	4.647e^-4	1	INTRON CG34371
3R	21014129	3R_21014129_SNP [dm3] 3R_25188407_SNP [dm6]	G	A	4.660e^-4	1	INTRON lobo & 1 other	TF binding site BDTNP1_TFBS_Med
2L	2045336	2L_2045336_SNP [dm3] 2L_2045336_SNP [dm6]	T	A	4.660e^-4	1	UPSTREAM Kebab DOWNSTREAM Su_dx_ EXON CR45298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	14071255	3R_14071255_SNP [dm3] 3R_18245533_SNP [dm6]	A	T	4.677e^-4	1	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	15254479	3L_15254479_SNP [dm3] 3L_15261379_SNP [dm6]	A	G	4.681e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15830977	3R_15830977_DEL [dm3] 3R_20005255_DEL [dm6]	GTATGTATT	G	4.687e^-4	1	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5780268	2L_5780268_SNP [dm3] 2L_5780268_SNP [dm6]	G	C	4.694e^-4	1	INTRON CG9171	TF binding site BDTNP1_TFBS_twi
3R	12754824	3R_12754824_SNP [dm3] 3R_16929102_SNP [dm6]	T	C	4.695e^-4	1	UTR_3_PRIME Abd-B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9333483	2L_9333483_SNP [dm3] 2L_9333483_SNP [dm6]	C	A	4.699e^-4	1	UPSTREAM Eaat1 INTERGENIC
3L	5858543	3L_5858543_SNP [dm3] 3L_5865443_SNP [dm6]	T	A	4.703e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3999131	3L_3999131_SNP [dm3] 3L_3999131_SNP [dm6]	G	A	4.706e^-4	1	INTERGENIC
2R	2440840	2R_2440840_DEL [dm3] 2R_6553335_DEL [dm6]	AACACC	A	4.706e^-4	1	INTRON jing	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18898899	2L_18898899_SNP [dm3] 2L_18898899_SNP [dm6]	C	T	4.718e^-4	1	DOWNSTREAM CR44739 INTERGENIC
2R	8642921	2R_8642921_SNP [dm3] 2R_12755416_SNP [dm6]	T	C	4.740e^-4	1	UPSTREAM Taz INTRON Taz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	22063444	X_22063444_SNP [dm3] X_22661608_SNP [dm6]	A	T	4.742e^-4	1	INTRON CR44997
X	16833611	X_16833611_SNP [dm3] X_16939578_SNP [dm6]	T	C	4.751e^-4	1	SYNONYMOUS_CODING wus	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12638428	2L_12638428_SNP [dm3] 2L_12638428_SNP [dm6]	A	T	4.771e^-4	1	INTRON Ref2	TF binding site BDTNP1_TFBS_twi
X	10840141	X_10840141_SNP [dm3] X_10946108_SNP [dm6]	A	G	4.774e^-4	1	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
2R	14579652	2R_14579652_SNP [dm3] 2R_18692147_SNP [dm6]	C	T	4.774e^-4	1	UTR_5_PRIME Sik3 INTRON Sik3
3R	25732927	3R_25732927_SNP [dm3] 3R_29907205_SNP [dm6]	G	T	4.778e^-4	1	UPSTREAM CG31036 DOWNSTREAM CG15515 INTERGENIC
2L	18496909	2L_18496909_SNP [dm3] 2L_18496909_SNP [dm6]	C	T	4.785e^-4	1	INTRON kon
3R	25182567	3R_25182567_SNP [dm3] 3R_29356845_SNP [dm6]	T	C	4.791e^-4	1	UPSTREAM CR45547 INTERGENIC
2L	10912580	2L_10912580_SNP [dm3] 2L_10912580_SNP [dm6]	T	C	4.796e^-4	1	INTERGENIC
2L	9509187	2L_9509187_SNP [dm3] 2L_9509187_SNP [dm6]	A	G	4.807e^-4	1	INTRON CG33298
2R	18594619	2R_18594619_SNP [dm3] 2R_22707114_SNP [dm6]	G	A	4.810e^-4	1	UPSTREAM Obp58c & 1 other DOWNSTREAM CR43735 INTRON Obp58d
2L	7125016	2L_7125016_SNP [dm3] 2L_7125016_SNP [dm6]	T	C	4.824e^-4	1	INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10475423	2L_10475423_SNP [dm3] 2L_10475423_SNP [dm6]	T	C	4.835e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8137263	3R_8137263_SNP [dm3] 3R_12311541_SNP [dm6]	G	A	4.840e^-4	1	SYNONYMOUS_CODING CG4066	TF binding site mE1_TFBS_sens
2L	4588031	2L_4588031_SNP [dm3] 2L_4588031_SNP [dm6]	A	G	4.841e^-4	1	INTRON dp
2L	12339547	2L_12339547_SNP [dm3] 2L_12339547_SNP [dm6]	G	A	4.844e^-4	1	DOWNSTREAM CG31862 INTERGENIC
3L	17814244	3L_17814244_SNP [dm3] 3L_17821144_SNP [dm6]	G	C	4.848e^-4	1	UPSTREAM Ir75b INTRON Ir75c
X	10834226	X_10834226_SNP [dm3] X_10940193_SNP [dm6]	A	T	4.850e^-4	1	INTRON Myo10A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22556637	3R_22556637_SNP [dm3] 3R_26730915_SNP [dm6]	G	C	4.852e^-4	1	DOWNSTREAM CG14246 INTERGENIC
2L	11044729	2L_11044729_SNP [dm3] 2L_11044729_SNP [dm6]	A	T	4.853e^-4	1	INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	20503806	2L_20503806_SNP [dm3] 2L_20503806_SNP [dm6]	G	A	4.854e^-4	1	INTERGENIC
2L	1730904	2L_1730904_SNP [dm3] 2L_1730904_SNP [dm6]	G	C	4.854e^-4	1	NON_SYNONYMOUS_CODING CG31937 DOWNSTREAM CG17652	TF binding site mE1_TFBS_cad
2L	6764101	2L_6764101_SNP [dm3] 2L_6764101_SNP [dm6]	T	C	4.857e^-4	1	NON_SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_sens
2R	2396332	2R_2396332_SNP [dm3] 2R_6508827_SNP [dm6]	A	G	4.858e^-4	1	DOWNSTREAM CR45127 INTRON jing	TF binding site mE1_TFBS_cad
X	14801697	X_14801697_SNP [dm3] X_14907664_SNP [dm6]	G	A	4.859e^-4	1	SYNONYMOUS_CODING CG9509 INTRON Flo2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1367120	3L_1367120_SNP [dm3] 3L_1367120_SNP [dm6]	G	A	4.869e^-4	1	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4922059	3L_4922059_SNP [dm3] 3L_4922059_SNP [dm6]	T	A	4.874e^-4	1	INTERGENIC
3R	24482220	3R_24482220_SNP [dm3] 3R_28656498_SNP [dm6]	A	C	4.877e^-4	1	INTERGENIC
X	21886689	X_21886689_SNP [dm3] X_22484853_SNP [dm6]	T	C	4.880e^-4	1	INTRON Cp110	transposable element FlyBase
X	21846243	X_21846243_SNP [dm3] X_22444407_SNP [dm6]	G	A	4.881e^-4	1	UTR_5_PRIME CG14621 UPSTREAM CG14621	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	15740054	3R_15740054_SNP [dm3] 3R_19914332_SNP [dm6]	G	A	4.884e^-4	1	UTR_3_PRIME CG42508 DOWNSTREAM Xport & 2 others
2L	7889358	2L_7889358_SNP [dm3] 2L_7889358_SNP [dm6]	A	G	4.885e^-4	1	UTR_3_PRIME Spn28Db UPSTREAM Spn28Da
3R	25742029	3R_25742029_SNP [dm3] 3R_29916307_SNP [dm6]	G	C	4.886e^-4	1	INTRON trp
3R	3390215	3R_3390215_SNP [dm3] 3R_7564493_SNP [dm6]	G	C	4.887e^-4	1	INTERGENIC
3R	12844733	3R_12844733_SNP [dm3] 3R_17019011_SNP [dm6]	A	G	4.897e^-4	1	UTR_3_PRIME AdSL INTRON Pxd
X	21889962	X_21889962_INS [dm3] X_22488126_INS [dm6]	C	CA	4.899e^-4	1	DOWNSTREAM Cp110 INTRON l_1_G0196 EXON CR43493	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	15873854	3L_15873854_SNP [dm3] 3L_15880754_SNP [dm6]	A	T	4.904e^-4	1	INTRON pHCl
3L	6584785	3L_6584785_SNP [dm3] 3L_6591685_SNP [dm6]	C	A	4.905e^-4	1	SYNONYMOUS_CODING CG18769
3R	6518880	3R_6518880_SNP [dm3] 3R_10693158_SNP [dm6]	T	A	4.921e^-4	1	INTRON Skeletor
3L	9750670	3L_9750670_SNP [dm3] 3L_9757570_SNP [dm6]	T	C	4.931e^-4	1	INTRON CG42268
2L	12581590	2L_12581590_SNP [dm3] 2L_12581590_SNP [dm6]	T	C	4.955e^-4	1	UPSTREAM CR44595 EXON CR44596
2L	7768085	2L_7768085_SNP [dm3] 2L_7768085_SNP [dm6]	T	C	4.957e^-4	1	INTRON CG7191
3L	837599	3L_837599_SNP [dm3] 3L_837599_SNP [dm6]	C	T	4.963e^-4	1	UPSTREAM CG13887 & 1 other DOWNSTREAM CG42554 INTRON CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
X	19007094	X_19007094_SNP [dm3] X_19113061_SNP [dm6]	C	G	4.964e^-4	1	INTERGENIC
3R	2776372	3R_2776372_SNP [dm3] 3R_6950650_SNP [dm6]	G	T	4.966e^-4	1	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5789417	2L_5789417_SNP [dm3] 2L_5789417_SNP [dm6]	A	G	4.973e^-4	1	INTRON CG9171	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6381280	2L_6381280_SNP [dm3] 2L_6381280_SNP [dm6]	G	A	4.984e^-4	1	UTR_5_PRIME CG9507 INTRON CG42368	TF binding site mE1_TFBS_chinmo
3R	20978157	3R_20978157_SNP [dm3] 3R_25152435_SNP [dm6]	T	G	4.989e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12385788	2L_12385788_SNP [dm3] 2L_12385788_SNP [dm6]	G	A	4.998e^-4	1	INTRON bru-2
3R	12847059	3R_12847059_SNP [dm3] 3R_17021337_SNP [dm6]	A	G	5.002e^-4	1	UPSTREAM AdSL INTRON Pxd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	10919580	2L_10919580_SNP [dm3] 2L_10919580_SNP [dm6]	A	G	5.006e^-4	1	INTRON dpr2
2R	19871005	2R_19871005_SNP [dm3] 2R_23983482_SNP [dm6]	G	C	5.008e^-4	1	INTRON Sox14	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10345055	3L_10345055_SNP [dm3] 3L_10351955_SNP [dm6]	T	C	5.022e^-4	1	INTRON CR44327
X	4730572	X_4730572_SNP [dm3] X_4836539_SNP [dm6]	T	A	5.031e^-4	1	INTERGENIC
3R	24776448	3R_24776448_SNP [dm3] 3R_28950726_SNP [dm6]	A	G	5.033e^-4	1	INTRON CG14521	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	4530373	3R_4530373_SNP [dm3] 3R_8704651_SNP [dm6]	G	A	5.034e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	13674200	2R_13674200_SNP [dm3] 2R_17786695_SNP [dm6]	A	T	5.035e^-4	1	SYNONYMOUS_CODING aft	TF binding site mE1_TFBS_sens
2L	2701668	2L_2701668_SNP [dm3] 2L_2701668_SNP [dm6]	C	T	5.040e^-4	1	INTRON CG31690	TF binding site mE1_TFBS_chinmo
3L	1370435	3L_1370435_INS [dm3] 3L_1370435_INS [dm6]	T	TT	5.043e^-4	1	UPSTREAM ru INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8327610	3L_8327610_SNP [dm3] 3L_8334510_SNP [dm6]	A	C	5.043e^-4	1	INTERGENIC
3L	3218333	3L_3218333_SNP [dm3] 3L_3218333_SNP [dm6]	C	A	5.050e^-4	1	NON_SYNONYMOUS_CODING CG14967 UPSTREAM CG12034	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	9060793	3R_9060793_SNP [dm3] 3R_13235071_SNP [dm6]	G	C	5.053e^-4	1	INTRON Ace
2R	20135789	2R_20135789_SNP [dm3] 2R_24248266_SNP [dm6]	C	G	5.058e^-4	1	DOWNSTREAM Ir60a INTRON nord
3L	4212767	3L_4212767_SNP [dm3] 3L_4212767_SNP [dm6]	G	A	5.063e^-4	1	SYNONYMOUS_CODING Cpr64Ac INTRON CG43367	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
3R	9603490	3R_9603490_SNP [dm3] 3R_13777768_SNP [dm6]	A	T	5.064e^-4	1	INTRON CG9297	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	13135950	3L_13135950_SNP [dm3] 3L_13142850_SNP [dm6]	T	C	5.081e^-4	1	INTERGENIC
X	16480048	X_16480048_INS [dm3] X_16586015_INS [dm6]	T	TT	5.094e^-4	1	INTRON CanA-14F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15639389	X_15639389_SNP [dm3] X_15745356_SNP [dm6]	G	A	5.100e^-4	1	SYNONYMOUS_CODING CG8944
2L	7126701	2L_7126701_SNP [dm3] 2L_7126701_SNP [dm6]	C	T	5.118e^-4	1	INTRON Pvf3
3R	22684412	3R_22684412_SNP [dm3] 3R_26858690_SNP [dm6]	A	G	5.124e^-4	1	INTRON Lerp	TF binding site mE1_TFBS_chinmo
3R	21041515	3R_21041515_SNP [dm3] 3R_25215793_SNP [dm6]	T	C	5.125e^-4	1	UPSTREAM CG13663 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	2528034	2R_2528034_SNP [dm3] 2R_6640529_SNP [dm6]	T	C	5.126e^-4	1	SYNONYMOUS_CODING Bap170	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2181875	3L_2181875_SNP [dm3] 3L_2181875_SNP [dm6]	C	T	5.152e^-4	1	INTERGENIC
2R	8251388	2R_8251388_SNP [dm3] 2R_12363883_SNP [dm6]	T	C	5.157e^-4	1	DOWNSTREAM CG30043 EXON CR33013	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16467739	3R_16467739_SNP [dm3] 3R_20642017_SNP [dm6]	C	A	5.160e^-4	1	SYNONYMOUS_CODING Lrrk
2L	5062646	2L_5062646_SNP [dm3] 2L_5062646_SNP [dm6]	G	T	5.163e^-4	1	UPSTREAM qtc INTRON qtc EXON CR43820	TF binding site mE1_TFBS_HSA
2L	12298894	2L_12298894_SNP [dm3] 2L_12298894_SNP [dm6]	G	A	5.175e^-4	1	SYNONYMOUS_CODING aret	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	23229078	3L_23229078_SNP [dm3] 3L_23235978_SNP [dm6]	C	T	5.177e^-4	1	INTRON nAChRalpha4	transposable element FlyBase
3R	6552728	3R_6552728_SNP [dm3] 3R_10727006_SNP [dm6]	A	T	5.179e^-4	1	INTERGENIC
2L	5817039	2L_5817039_SNP [dm3] 2L_5817039_SNP [dm6]	C	T	5.183e^-4	1	DOWNSTREAM CG31644 INTERGENIC
3R	17208484	3R_17208484_SNP [dm3] 3R_21382762_SNP [dm6]	C	T	5.190e^-4	1	DOWNSTREAM tin INTERGENIC	regulatory region FlyBase REDfly_CRMs
3L	15693658	3L_15693658_SNP [dm3] 3L_15700558_SNP [dm6]	T	A	5.197e^-4	1	UPSTREAM comm2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	2442162	2R_2442162_SNP [dm3] 2R_6554657_SNP [dm6]	G	A	5.202e^-4	1	INTRON jing
2R	9097944	2R_9097944_SNP [dm3] 2R_13210439_SNP [dm6]	G	A	5.203e^-4	1	UTR_3_PRIME FLASH DOWNSTREAM FLASH INTRON CG30058 & 2 others
2L	6378863	2L_6378863_SNP [dm3] 2L_6378863_SNP [dm6]	G	A	5.209e^-4	1	SYNONYMOUS_CODING CG42368
2R	2444974	2R_2444974_DEL [dm3] 2R_6557469_DEL [dm6]	TATAATA	T	5.213e^-4	1	INTRON jing
3R	9945886	3R_9945886_SNP [dm3] 3R_14120164_SNP [dm6]	C	T	5.219e^-4	1	SYNONYMOUS_CODING Abi	TF binding site mE1_TFBS_cad
3R	9945829	3R_9945829_SNP [dm3] 3R_14120107_SNP [dm6]	A	C	5.219e^-4	1	SYNONYMOUS_CODING Abi	TF binding site mE1_TFBS_cad
2R	2398437	2R_2398437_SNP [dm3] 2R_6510932_SNP [dm6]	T	G	5.223e^-4	1	UPSTREAM CR45127 INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	16480873	X_16480873_SNP [dm3] X_16586840_SNP [dm6]	G	A	5.226e^-4	1	UPSTREAM CanA-14F INTRON CanA-14F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2390906	2L_2390906_SNP [dm3] 2L_2390906_SNP [dm6]	T	G	5.238e^-4	1	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
3R	8337236	3R_8337236_SNP [dm3] 3R_12511514_SNP [dm6]	C	T	5.252e^-4	1	DOWNSTREAM Octbeta3R & 1 other INTERGENIC
2R	12569422	2R_12569422_SNP [dm3] 2R_16681917_SNP [dm6]	A	G	5.258e^-4	1	INTRON CG30463
2R	18616584	2R_18616584_SNP [dm3] 2R_22729079_SNP [dm6]	A	T	5.269e^-4	1	INTRON jbug	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	10634034	X_10634034_SNP [dm3] X_10740001_SNP [dm6]	C	T	5.277e^-4	1	INTRON CG32676	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
2R	14149300	2R_14149300_INS [dm3] 2R_18261795_INS [dm6]	T	TC	5.281e^-4	1	INTERGENIC
2R	14149303	2R_14149303_DEL [dm3] 2R_18261798_DEL [dm6]	AAACT	A	5.281e^-4	1	INTERGENIC
3R	12962697	3R_12962697_SNP [dm3] 3R_17136975_SNP [dm6]	C	T	5.282e^-4	1	SYNONYMOUS_CODING CG5246 UPSTREAM CG5255
3R	14254455	3R_14254455_SNP [dm3] 3R_18428733_SNP [dm6]	T	C	5.301e^-4	1	UTR_3_PRIME fru INTRON fru
2R	17723768	2R_17723768_SNP [dm3] 2R_21836263_SNP [dm6]	T	A	5.317e^-4	1	SYNONYMOUS_CODING CG4377
X	20674472	X_20674472_SNP [dm3] X_20803445_SNP [dm6]	T	C	5.318e^-4	1	UTR_5_PRIME shakB INTRON shakB
3L	12519384	3L_12519384_SNP [dm3] 3L_12526284_SNP [dm6]	G	A	5.322e^-4	1	SYNONYMOUS_CODING eIF-2beta DOWNSTREAM nst	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	1641721	2R_1641721_DEL [dm3] 2R_5754216_DEL [dm6]	ACGGGTATTTGA...	A	5.322e^-4	1	UPSTREAM l_2_09851 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sbb
3L	4217064	3L_4217064_SNP [dm3] 3L_4217064_SNP [dm6]	G	A	5.330e^-4	1	SYNONYMOUS_CODING CG43367 DOWNSTREAM Cpr64Ad
X	11335036	X_11335036_SNP [dm3] X_11441003_SNP [dm6]	A	G	5.330e^-4	1	INTRON Evi5
3L	3983565	3L_3983565_SNP [dm3] 3L_3983565_SNP [dm6]	G	C	5.333e^-4	1	UPSTREAM scrt INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6465542	3L_6465542_SNP [dm3] 3L_6472442_SNP [dm6]	G	A	5.341e^-4	1	INTRON CG42747	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19399371	3R_19399371_SNP [dm3] 3R_23573649_SNP [dm6]	A	C	5.359e^-4	1	SYNONYMOUS_CODING beat-IV	TF binding site mE1_TFBS_chinmo
3R	3740571	3R_3740571_SNP [dm3] 3R_7914849_SNP [dm6]	G	A	5.359e^-4	1	SYNONYMOUS_CODING CG2678	TF binding site BDTNP1_TFBS_da
X	5636628	X_5636628_SNP [dm3] X_5742595_SNP [dm6]	A	G	5.366e^-4	1	SYNONYMOUS_CODING IntS6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	15381887	2R_15381887_SNP [dm3] 2R_19494382_SNP [dm6]	G	A	5.372e^-4	1	UTR_3_PRIME hpo DOWNSTREAM Rep
2R	6279068	2R_6279068_SNP [dm3] 2R_10391563_SNP [dm6]	A	T	5.373e^-4	1	INTRON CG42732
3R	16962381	3R_16962381_SNP [dm3] 3R_21136659_SNP [dm6]	G	C	5.375e^-4	1	INTRON Ubpy
X	7545377	X_7545377_SNP [dm3] X_7651344_SNP [dm6]	C	T	5.376e^-4	1	INTRON ct
2R	15121463	2R_15121463_SNP [dm3] 2R_19233958_SNP [dm6]	C	T	5.383e^-4	1	INTRON cora
2L	5797038	2L_5797038_SNP [dm3] 2L_5797038_SNP [dm6]	A	G	5.392e^-4	1	INTRON CG9171
3L	328052	3L_328052_SNP [dm3] 3L_328052_SNP [dm6]	A	T	5.393e^-4	1	UPSTREAM Ptpmeg & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3L	15027565	3L_15027565_SNP [dm3] 3L_15034465_SNP [dm6]	C	T	5.399e^-4	1	UPSTREAM Sytbeta INTRON Sytbeta
3L	15027570	3L_15027570_SNP [dm3] 3L_15034470_SNP [dm6]	A	T	5.399e^-4	1	UPSTREAM Sytbeta INTRON Sytbeta
3L	4213769	3L_4213769_SNP [dm3] 3L_4213769_SNP [dm6]	G	A	5.410e^-4	1	UPSTREAM Cpr64Ac INTRON CG43367	TF binding site mE1_TFBS_cad
3R	11774955	3R_11774955_SNP [dm3] 3R_15949233_SNP [dm6]	T	C	5.412e^-4	1	DOWNSTREAM CG31088 INTRON Sap47
3R	14071196	3R_14071196_SNP [dm3] 3R_18245474_SNP [dm6]	G	C	5.416e^-4	1	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	2772114	3R_2772114_SNP [dm3] 3R_6946392_SNP [dm6]	T	G	5.417e^-4	1	INTRON Antp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	3761310	X_3761310_SNP [dm3] X_3867277_SNP [dm6]	C	T	5.417e^-4	1	UPSTREAM yin INTRON yin	TF binding site mE1_TFBS_Trl
3L	16984600	3L_16984600_SNP [dm3] 3L_16991500_SNP [dm6]	G	T	5.420e^-4	1	SYNONYMOUS_CODING Exn	TF binding site mE1_TFBS_chinmo
3L	6374062	3L_6374062_SNP [dm3] 3L_6380962_SNP [dm6]	C	A	5.423e^-4	1	INTERGENIC
2L	10526140	2L_10526140_SNP [dm3] 2L_10526140_SNP [dm6]	T	A	5.436e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	5805973	2L_5805973_SNP [dm3] 2L_5805973_SNP [dm6]	A	G	5.437e^-4	1	INTRON CG11034	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
X	21889737	X_21889737_SNP [dm3] X_22487901_SNP [dm6]	A	C	5.446e^-4	1	DOWNSTREAM Cp110 INTRON l_1_G0196 EXON CR43493	TF binding site mE1_TFBS_Trl
3R	16720898	3R_16720898_SNP [dm3] 3R_20895176_SNP [dm6]	A	G	5.450e^-4	1	UTR_3_PRIME CG10830
X	3214519	X_3214519_SNP [dm3] X_3320486_SNP [dm6]	G	A	5.459e^-4	1	INTRON dnc & 1 other
3R	9605182	3R_9605182_SNP [dm3] 3R_13779460_SNP [dm6]	T	A	5.461e^-4	1	UPSTREAM CG9288 & 1 other DOWNSTREAM CG9297 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	18382490	X_18382490_SNP [dm3] X_18488457_SNP [dm6]	A	G	5.474e^-4	1	SYNONYMOUS_CODING CG15046	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12351651	3L_12351651_SNP [dm3] 3L_12358551_SNP [dm6]	G	T	5.476e^-4	1	INTERGENIC
2R	11060449	2R_11060449_SNP [dm3] 2R_15172944_SNP [dm6]	G	T	5.476e^-4	1	INTRON igl	TF binding site mE1_TFBS_HSA
3L	23237901	3L_23237901_SNP [dm3] 3L_23244801_SNP [dm6]	A	G	5.477e^-4	1	INTRON nAChRalpha4
2R	18377046	2R_18377046_SNP [dm3] 2R_22489541_SNP [dm6]	A	T	5.478e^-4	1	SYNONYMOUS_CODING CG4554	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5780258	2L_5780258_DEL [dm3] 2L_5780258_DEL [dm6]	AA	A	5.483e^-4	1	INTRON CG9171	TF binding site BDTNP1_TFBS_twi
2R	17274105	2R_17274105_SNP [dm3] 2R_21386600_SNP [dm6]	G	T	5.489e^-4	1	UTR_5_PRIME Acox57D-p UPSTREAM Acox57D-p & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	21891872	X_21891872_SNP [dm3] X_22490036_SNP [dm6]	T	G	5.490e^-4	1	INTRON l_1_G0196 & 1 other
2R	15469443	2R_15469443_SNP [dm3] 2R_19581938_SNP [dm6]	T	A	5.500e^-4	1	INTRON sm
2R	1641430	2R_1641430_SNP [dm3] 2R_5753925_SNP [dm6]	A	T	5.501e^-4	1	UPSTREAM l_2_09851 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	23243874	3L_23243874_SNP [dm3] 3L_23250774_SNP [dm6]	A	T	5.501e^-4	1	INTRON nAChRalpha4	TF binding site BDTNP1_TFBS_dl
3L	1023584	3L_1023584_SNP [dm3] 3L_1023584_SNP [dm6]	T	A	5.508e^-4	1	UPSTREAM trio INTRON trio
2L	7005452	2L_7005452_SNP [dm3] 2L_7005452_SNP [dm6]	G	A	5.513e^-4	1	INTRON uif
X	21889308	X_21889308_SNP [dm3] X_22487472_SNP [dm6]	C	T	5.515e^-4	1	START_GAINED l_1_G0196 UTR_5_PRIME l_1_G0196 DOWNSTREAM CR43493 & 1 other
2L	5480048	2L_5480048_SNP [dm3] 2L_5480048_SNP [dm6]	T	A	5.518e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	14979468	2R_14979468_SNP [dm3] 2R_19091963_SNP [dm6]	T	C	5.530e^-4	1	INTRON 5-HT1A
3L	3101747	3L_3101747_SNP [dm3] 3L_3101747_SNP [dm6]	A	C	5.535e^-4	1	INTRON Cht7
X	16481751	X_16481751_SNP [dm3] X_16587718_SNP [dm6]	A	C	5.536e^-4	1	UPSTREAM CG13014 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2579584	2L_2579584_SNP [dm3] 2L_2579584_SNP [dm6]	A	C	5.537e^-4	1	UPSTREAM Arpc5 DOWNSTREAM Elba2 INTRON CG3214	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	837496	3L_837496_SNP [dm3] 3L_837496_SNP [dm6]	G	A	5.538e^-4	1	UTR_5_PRIME CG13901 UPSTREAM CG13887 DOWNSTREAM CG42554	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2R	9041504	2R_9041504_SNP [dm3] 2R_13153999_SNP [dm6]	G	A	5.541e^-4	1	NON_SYNONYMOUS_CODING TppII	TF binding site mE1_TFBS_chinmo
3L	12345094	3L_12345094_DEL [dm3] 3L_12351994_DEL [dm6]	TGAG	T	5.543e^-4	1	UPSTREAM CrzR INTERGENIC
2R	2448247	2R_2448247_SNP [dm3] 2R_6560742_SNP [dm6]	A	G	5.546e^-4	1	INTRON jing	TF binding site mE1_TFBS_chinmo
3R	16263393	3R_16263393_SNP [dm3] 3R_20437671_SNP [dm6]	C	A	5.546e^-4	1	INTRON Gfrl
2L	5791637	2L_5791637_SNP [dm3] 2L_5791637_SNP [dm6]	G	C	5.555e^-4	1	INTRON CG9171
3R	15694596	3R_15694596_SNP [dm3] 3R_19868874_SNP [dm6]	C	A	5.559e^-4	1	SYNONYMOUS_CODING CG4562	TF binding site mE1_TFBS_cad
3R	20554551	3R_20554551_SNP [dm3] 3R_24728829_SNP [dm6]	T	C	5.572e^-4	1	INTRON tok
2L	18612817	2L_18612817_SNP [dm3] 2L_18612817_SNP [dm6]	T	G	5.586e^-4	1	UPSTREAM Atac2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2R	3573442	2R_3573442_SNP [dm3] 2R_7685937_SNP [dm6]	G	C	5.588e^-4	1	INTRON CG1399
2L	3545253	2L_3545253_SNP [dm3] 2L_3545253_SNP [dm6]	A	T	5.594e^-4	1	START_GAINED drm UTR_5_PRIME drm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2802971	3L_2802971_SNP [dm3] 3L_2802971_SNP [dm6]	G	T	5.597e^-4	1	INTRON CG43444
3R	15123870	3R_15123870_SNP [dm3] 3R_19298148_SNP [dm6]	A	T	5.603e^-4	1	UPSTREAM CG44174 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8946805	X_8946805_SNP [dm3] X_9052772_SNP [dm6]	T	C	5.615e^-4	1	NON_SYNONYMOUS_CODING CG42388	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8333812	X_8333812_SNP [dm3] X_8439779_SNP [dm6]	G	T	5.616e^-4	1	INTRON CG1440	TF binding site mE1_TFBS_sens
2R	2460449	2R_2460449_SNP [dm3] 2R_6572944_SNP [dm6]	A	C	5.618e^-4	1	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4982008	3L_4982008_SNP [dm3] 3L_4982008_SNP [dm6]	C	G	5.620e^-4	1	DOWNSTREAM CR45685 INTRON Con	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7213506	2L_7213506_SNP [dm3] 2L_7213506_SNP [dm6]	C	A	5.624e^-4	1	INTRON CG13784	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16697615	2L_16697615_SNP [dm3] 2L_16697615_SNP [dm6]	C	T	5.649e^-4	1	SYNONYMOUS_CODING grp UPSTREAM mir-9c & 2 others EXON CR44975
3L	11236588	3L_11236588_SNP [dm3] 3L_11243488_SNP [dm6]	C	T	5.650e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17338567	2R_17338567_SNP [dm3] 2R_21451062_SNP [dm6]	T	C	5.655e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10621309	X_10621309_SNP [dm3] X_10727276_SNP [dm6]	A	T	5.667e^-4	1	INTRON CG32676
2L	2046022	2L_2046022_SNP [dm3] 2L_2046022_SNP [dm6]	A	T	5.669e^-4	1	UPSTREAM CR45298 INTRON Kebab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	16477278	X_16477278_DEL [dm3] X_16583245_DEL [dm6]	AT	A	5.676e^-4	1	INTRON CanA-14F
2L	3236343	2L_3236343_SNP [dm3] 2L_3236343_SNP [dm6]	A	T	5.681e^-4	1	INTERGENIC
2R	14851680	2R_14851680_SNP [dm3] 2R_18964175_SNP [dm6]	A	G	5.687e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23951706	3R_23951706_SNP [dm3] 3R_28125984_SNP [dm6]	C	T	5.695e^-4	1	INTERGENIC
3L	7721501	3L_7721501_SNP [dm3] 3L_7728401_SNP [dm6]	T	G	5.698e^-4	1	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
2L	18639967	2L_18639967_SNP [dm3] 2L_18639967_SNP [dm6]	T	A	5.700e^-4	1	INTRON MESR3
2L	2332667	2L_2332667_SNP [dm3] 2L_2332667_SNP [dm6]	C	T	5.704e^-4	1	INTRON CG9967 & 1 other
3L	16891678	3L_16891678_SNP [dm3] 3L_16898578_SNP [dm6]	G	C	5.713e^-4	1	UPSTREAM Lmpt INTRON Lmpt
3L	14389265	3L_14389265_SNP [dm3] 3L_14396165_SNP [dm6]	T	A	5.716e^-4	1	INTERGENIC
2L	19731233	2L_19731233_SNP [dm3] 2L_19731233_SNP [dm6]	G	A	5.724e^-4	1	UTR_3_PRIME Lar DOWNSTREAM CG10462

By genomic position
Variant impact
Gene name

ChillComaRec phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results