DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.369e^-20)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.0315909
In_3R_P	<
In_3R_K	<
In_3R_Mo	1.443e-11

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	6.8811	0.032
In_3R_K	17.2667	0.0002

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1866 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	15348697	2L_15348697_SNP [dm3] 2L_15348697_SNP [dm6]	C	T	4.515e^-7	0.59	INTERGENIC
2L	15348712	2L_15348712_INS [dm3] 2L_15348712_INS [dm6]	G	AA	7.378e^-7	0.59	INTERGENIC
3L	12369508	3L_12369508_SNP [dm3] 3L_12376408_SNP [dm6]	T	C	1.192e^-6	0.59	INTRON Ncc69
2L	7723634	2L_7723634_SNP [dm3] 2L_7723634_SNP [dm6]	G	A	1.259e^-6	0.59	SYNONYMOUS_CODING CG13795 UPSTREAM CG13794
3L	7628042	3L_7628042_SNP [dm3] 3L_7634942_SNP [dm6]	C	A	2.023e^-6	0.624	INTRON CG33275	TF binding site mE1_TFBS_HSA
2R	14171938	2R_14171938_SNP [dm3] 2R_18284433_SNP [dm6]	T	C	2.720e^-6	0.624	SYNONYMOUS_CODING sbb DOWNSTREAM sbb	TF binding site mE1_TFBS_cad
X	9023539	X_9023539_SNP [dm3] X_9129506_SNP [dm6]	C	A	2.758e^-6	0.624	INTRON fend	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4503748	2L_4503748_SNP [dm3] 2L_4503748_SNP [dm6]	T	C	2.773e^-6	0.624	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5251757	X_5251757_SNP [dm3] X_5357724_SNP [dm6]	C	T	3.164e^-6	0.624	UPSTREAM SK INTRON SK
2L	4524380	2L_4524380_SNP [dm3] 2L_4524380_SNP [dm6]	G	A	3.327e^-6	0.624	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3288375	2L_3288375_SNP [dm3] 2L_3288375_SNP [dm6]	G	A	4.090e^-6	0.632	EXON CR44485
X	5251741	X_5251741_SNP [dm3] X_5357708_SNP [dm6]	G	T	4.350e^-6	0.632	UPSTREAM SK INTRON SK
2R	17896043	2R_17896043_SNP [dm3] 2R_22008538_SNP [dm6]	T	A	5.097e^-6	0.632	INTRON CG34370
X	5224802	X_5224802_SNP [dm3] X_5330769_SNP [dm6]	A	G	5.131e^-6	0.632	NON_SYNONYMOUS_CODING XRCC1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20281789	3R_20281789_SNP [dm3] 3R_24456067_SNP [dm6]	C	T	5.518e^-6	0.632	INTRON nAChRalpha1
X	3475525	X_3475525_INS [dm3] X_3581492_INS [dm6]	T	TT	5.825e^-6	0.632	INTRON AstA-R1
2R	9609124	2R_9609124_SNP [dm3] 2R_13721619_SNP [dm6]	T	G	6.592e^-6	0.632	INTRON fas
2L	4562833	2L_4562833_SNP [dm3] 2L_4562833_SNP [dm6]	A	C	6.602e^-6	0.632	INTRON dp
2L	4503817	2L_4503817_SNP [dm3] 2L_4503817_SNP [dm6]	T	C	6.674e^-6	0.632	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9609131	2R_9609131_SNP [dm3] 2R_13721626_SNP [dm6]	G	A	6.742e^-6	0.632	INTRON fas
2L	15348643	2L_15348643_SNP [dm3] 2L_15348643_SNP [dm6]	G	T	7.218e^-6	0.642	INTERGENIC
X	10619731	X_10619731_SNP [dm3] X_10725698_SNP [dm6]	G	A	7.584e^-6	0.642	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12369363	3L_12369363_SNP [dm3] 3L_12376263_SNP [dm6]	A	T	7.955e^-6	0.642	INTRON Ncc69
2L	7500266	2L_7500266_SNP [dm3] 2L_7500266_SNP [dm6]	A	G	8.215e^-6	0.642	SYNONYMOUS_CODING RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4524308	2L_4524308_SNP [dm3] 2L_4524308_SNP [dm6]	T	C	8.961e^-6	0.649	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20017754	3R_20017754_SNP [dm3] 3R_24192032_SNP [dm6]	G	T	9.321e^-6	0.649	INTRON jnj
3L	7627092	3L_7627092_SNP [dm3] 3L_7633992_SNP [dm6]	C	T	1.054e^-5	0.649	INTRON CG33275
X	10619674	X_10619674_SNP [dm3] X_10725641_SNP [dm6]	G	A	1.068e^-5	0.649	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20017764	3R_20017764_SNP [dm3] 3R_24192042_SNP [dm6]	C	A	1.072e^-5	0.649	SPLICE_SITE_REGION jnj INTRON jnj
X	10619678	X_10619678_SNP [dm3] X_10725645_SNP [dm6]	A	T	1.183e^-5	0.649	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8474257	2L_8474257_SNP [dm3] 2L_8474257_SNP [dm6]	T	C	1.219e^-5	0.649	INTRON d
2L	7595046	2L_7595046_SNP [dm3] 2L_7595046_SNP [dm6]	G	A	1.226e^-5	0.649	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10619668	X_10619668_SNP [dm3] X_10725635_SNP [dm6]	A	G	1.227e^-5	0.649	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7627057	3L_7627057_SNP [dm3] 3L_7633957_SNP [dm6]	A	G	1.235e^-5	0.649	INTRON CG33275
3L	7628058	3L_7628058_SNP [dm3] 3L_7634958_SNP [dm6]	C	T	1.235e^-5	0.649	INTRON CG33275	TF binding site mE1_TFBS_HSA
2L	8474270	2L_8474270_SNP [dm3] 2L_8474270_SNP [dm6]	A	G	1.258e^-5	0.649	INTRON d
2R	6976287	2R_6976287_INS [dm3] 2R_11088782_INS [dm6]	A	ATACACA	1.285e^-5	0.649	DOWNSTREAM CG43188 INTRON luna
2L	6127967	2L_6127967_SNP [dm3] 2L_6127967_SNP [dm6]	C	A	1.320e^-5	0.649	NON_SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730 UPSTREAM WDR79	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5954803	2L_5954803_SNP [dm3] 2L_5954803_SNP [dm6]	A	G	1.456e^-5	0.649	SYNONYMOUS_CODING CG9044 DOWNSTREAM CG13999	TF binding site mE1_TFBS_inv
3L	7628047	3L_7628047_SNP [dm3] 3L_7634947_SNP [dm6]	C	T	1.468e^-5	0.649	INTRON CG33275	TF binding site mE1_TFBS_HSA
2L	15348728	2L_15348728_SNP [dm3] 2L_15348728_SNP [dm6]	T	A	1.560e^-5	0.649	INTERGENIC
2L	7531801	2L_7531801_SNP [dm3] 2L_7531801_SNP [dm6]	A	C	1.612e^-5	0.649	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	10619702	X_10619702_SNP [dm3] X_10725669_SNP [dm6]	C	T	1.631e^-5	0.649	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20281807	3R_20281807_SNP [dm3] 3R_24456085_SNP [dm6]	T	C	1.638e^-5	0.649	INTRON nAChRalpha1
X	5251766	X_5251766_SNP [dm3] X_5357733_SNP [dm6]	C	T	1.659e^-5	0.649	UPSTREAM SK INTRON SK
2L	4524603	2L_4524603_SNP [dm3] 2L_4524603_SNP [dm6]	G	A	1.687e^-5	0.649	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	5816116	2R_5816116_SNP [dm3] 2R_9928611_SNP [dm6]	G	A	1.688e^-5	0.649	INTRON Mef2
2L	7536026	2L_7536026_SNP [dm3] 2L_7536026_SNP [dm6]	C	G	1.847e^-5	0.649	INTRON RapGAP1	TF binding site mE1_TFBS_cad
3R	21157386	3R_21157386_SNP [dm3] 3R_25331664_SNP [dm6]	T	C	1.986e^-5	0.649	UTR_3_PRIME CG10669 UPSTREAM CHKov2 DOWNSTREAM CG10669
3L	18213474	3L_18213474_SNP [dm3] 3L_18220374_SNP [dm6]	C	G	2.019e^-5	0.649	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
2L	9333751	2L_9333751_SNP [dm3] 2L_9333751_SNP [dm6]	A	T	2.056e^-5	0.649	START_GAINED Eaat1 UTR_5_PRIME Eaat1 INTRON Eaat1
2L	5335461	2L_5335461_SNP [dm3] 2L_5335461_SNP [dm6]	C	T	2.085e^-5	0.649	SPLICE_SITE_REGION fusl UTR_5_PRIME fusl INTRON fusl
2L	12238491	2L_12238491_SNP [dm3] 2L_12238491_SNP [dm6]	C	T	2.097e^-5	0.649	INTRON aret
3L	7628011	3L_7628011_SNP [dm3] 3L_7634911_SNP [dm6]	A	G	2.117e^-5	0.649	INTRON CG33275	TF binding site mE1_TFBS_HSA
X	10619711	X_10619711_INS [dm3] X_10725678_INS [dm6]	C	ATA	2.134e^-5	0.649	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4313712	3L_4313712_SNP [dm3] 3L_4313712_SNP [dm6]	C	T	2.155e^-5	0.649	SYNONYMOUS_CODING Claspin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	14060614	2R_14060614_SNP [dm3] 2R_18173109_SNP [dm6]	C	T	2.170e^-5	0.649	UPSTREAM Dgp-1 & 1 other EXON CR45315	TF binding site BDTNP1_TFBS_dl
2L	1819310	2L_1819310_SNP [dm3] 2L_1819310_SNP [dm6]	G	A	2.170e^-5	0.649	INTERGENIC
X	5224806	X_5224806_SNP [dm3] X_5330773_SNP [dm6]	G	C	2.191e^-5	0.649	NON_SYNONYMOUS_CODING XRCC1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26851591	3R_26851591_SNP [dm3] 3R_31025869_SNP [dm6]	C	T	2.192e^-5	0.649	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8360247	2L_8360247_SNP [dm3] 2L_8360247_SNP [dm6]	A	G	2.203e^-5	0.649	SYNONYMOUS_CODING CG7627	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8474278	2L_8474278_SNP [dm3] 2L_8474278_SNP [dm6]	G	A	2.255e^-5	0.649	INTRON d
X	10619769	X_10619769_SNP [dm3] X_10725736_SNP [dm6]	T	A	2.331e^-5	0.649	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25240219	3R_25240219_SNP [dm3] 3R_29414497_SNP [dm6]	C	A	2.336e^-5	0.649	INTRON Ptp99A
2R	14072871	2R_14072871_SNP [dm3] 2R_18185366_SNP [dm6]	A	T	2.375e^-5	0.649	SYNONYMOUS_CODING CG33958	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20017745	3R_20017745_DEL [dm3] 3R_24192023_DEL [dm6]	TT	T	2.378e^-5	0.649	INTRON jnj
2L	4503838	2L_4503838_SNP [dm3] 2L_4503838_SNP [dm6]	A	G	2.404e^-5	0.649	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	7476161	X_7476161_SNP [dm3] X_7582128_SNP [dm6]	C	T	2.438e^-5	0.649	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16914317	X_16914317_SNP [dm3] X_17020284_SNP [dm6]	C	A	2.455e^-5	0.649	INTRON CG45002
2L	5335596	2L_5335596_SNP [dm3] 2L_5335596_SNP [dm6]	C	T	2.533e^-5	0.649	UTR_5_PRIME fusl INTRON fusl
3R	25002934	3R_25002934_SNP [dm3] 3R_29177212_SNP [dm6]	C	A	2.556e^-5	0.649	INTRON CG14509
2L	8474287	2L_8474287_SNP [dm3] 2L_8474287_SNP [dm6]	G	A	2.656e^-5	0.649	INTRON d
X	5224774	X_5224774_SNP [dm3] X_5330741_SNP [dm6]	G	A	2.671e^-5	0.649	SYNONYMOUS_CODING XRCC1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4561954	2L_4561954_SNP [dm3] 2L_4561954_SNP [dm6]	G	A	2.706e^-5	0.649	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	18435029	2R_18435029_SNP [dm3] 2R_22547524_SNP [dm6]	A	G	2.725e^-5	0.649	UPSTREAM px INTRON px
3L	16334602	3L_16334602_SNP [dm3] 3L_16341502_SNP [dm6]	T	C	2.747e^-5	0.649	SYNONYMOUS_CODING CG4998	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10619721	X_10619721_SNP [dm3] X_10725688_SNP [dm6]	T	G	2.753e^-5	0.649	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4561546	2L_4561546_SNP [dm3] 2L_4561546_SNP [dm6]	T	G	2.755e^-5	0.649	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4559329	2L_4559329_SNP [dm3] 2L_4559329_SNP [dm6]	A	G	2.758e^-5	0.649	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	7536931	2L_7536931_SNP [dm3] 2L_7536931_SNP [dm6]	C	A	2.770e^-5	0.649	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	10619939	X_10619939_SNP [dm3] X_10725906_SNP [dm6]	C	T	2.807e^-5	0.65	INTRON CG32676	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
X	18160861	X_18160861_SNP [dm3] X_18266828_SNP [dm6]	G	A	2.842e^-5	0.65	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10619661	X_10619661_SNP [dm3] X_10725628_SNP [dm6]	G	A	3.035e^-5	0.675	INTRON CG32676	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5224782	X_5224782_SNP [dm3] X_5330749_SNP [dm6]	C	T	3.072e^-5	0.675	NON_SYNONYMOUS_CODING XRCC1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6373170	3L_6373170_SNP [dm3] 3L_6380070_SNP [dm6]	G	A	3.073e^-5	0.675	INTERGENIC
3R	20281790	3R_20281790_SNP [dm3] 3R_24456068_SNP [dm6]	A	G	3.096e^-5	0.675	INTRON nAChRalpha1
3R	21963098	3R_21963098_SNP [dm3] 3R_26137376_SNP [dm6]	T	G	3.137e^-5	0.676	DOWNSTREAM CG6142 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	3345001	2L_3345001_SNP [dm3] 2L_3345001_SNP [dm6]	G	A	3.231e^-5	0.676	INTRON E23
2L	19886711	2L_19886711_SNP [dm3] 2L_19886711_SNP [dm6]	G	A	3.246e^-5	0.676	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	11416149	3L_11416149_SNP [dm3] 3L_11423049_SNP [dm6]	C	G	3.346e^-5	0.676	INTERGENIC	TF binding site mE1_TFBS_D
3L	14156468	3L_14156468_SNP [dm3] 3L_14163368_SNP [dm6]	T	C	3.390e^-5	0.676	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
X	9497046	X_9497046_SNP [dm3] X_9603013_SNP [dm6]	T	A	3.390e^-5	0.676	SYNONYMOUS_CODING Gga	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11594068	3R_11594068_SNP [dm3] 3R_15768346_SNP [dm6]	A	G	3.398e^-5	0.676	UPSTREAM CG5623 INTERGENIC
2L	10426736	2L_10426736_INS [dm3] 2L_10426736_INS [dm6]	T	TGTT	3.414e^-5	0.676	UPSTREAM KdelR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2893295	2L_2893295_SNP [dm3] 2L_2893295_SNP [dm6]	C	T	3.499e^-5	0.676	INTRON lilli	TF binding site BDTNP1_TFBS_twi
2L	4560127	2L_4560127_SNP [dm3] 2L_4560127_SNP [dm6]	A	G	3.578e^-5	0.676	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20017662	3R_20017662_SNP [dm3] 3R_24191940_SNP [dm6]	A	C	3.621e^-5	0.676	SYNONYMOUS_CODING jnj
X	16914213	X_16914213_SNP [dm3] X_17020180_SNP [dm6]	G	C	3.624e^-5	0.676	INTRON CG45002
3R	11602936	3R_11602936_SNP [dm3] 3R_15777214_SNP [dm6]	C	T	3.634e^-5	0.676	SYNONYMOUS_CODING CG4525
2L	9469433	2L_9469433_SNP [dm3] 2L_9469433_SNP [dm6]	C	T	3.665e^-5	0.676	UPSTREAM CR43769 INTERGENIC
3R	25240218	3R_25240218_SNP [dm3] 3R_29414496_SNP [dm6]	T	C	3.709e^-5	0.676	INTRON Ptp99A
2R	16185083	2R_16185083_SNP [dm3] 2R_20297578_SNP [dm6]	A	T	3.764e^-5	0.676	INTERGENIC
X	10619718	X_10619718_SNP [dm3] X_10725685_SNP [dm6]	A	T	3.806e^-5	0.676	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4560346	2L_4560346_SNP [dm3] 2L_4560346_SNP [dm6]	C	G	3.899e^-5	0.676	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	6128174	2L_6128174_SNP [dm3] 2L_6128174_SNP [dm6]	G	C	4.070e^-5	0.676	NON_SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730 UPSTREAM WDR79	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18399890	2R_18399890_SNP [dm3] 2R_22512385_SNP [dm6]	A	G	4.151e^-5	0.676	INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
X	5224801	X_5224801_SNP [dm3] X_5330768_SNP [dm6]	G	A	4.260e^-5	0.676	SYNONYMOUS_CODING XRCC1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12375879	3L_12375879_SNP [dm3] 3L_12382779_SNP [dm6]	C	A	4.260e^-5	0.676	INTRON Ncc69
3L	12597490	3L_12597490_SNP [dm3] 3L_12604390_SNP [dm6]	A	T	4.317e^-5	0.676	INTERGENIC
2L	7499638	2L_7499638_SNP [dm3] 2L_7499638_SNP [dm6]	T	G	4.348e^-5	0.676	SYNONYMOUS_CODING RapGAP1	TF binding site mE1_TFBS_cad
2L	4549707	2L_4549707_DEL [dm3] 2L_4549707_DEL [dm6]	AA	A	4.384e^-5	0.676	INTRON dp
2R	15120954	2R_15120954_SNP [dm3] 2R_19233449_SNP [dm6]	C	T	4.396e^-5	0.676	INTRON cora
3R	25240156	3R_25240156_SNP [dm3] 3R_29414434_SNP [dm6]	C	T	4.465e^-5	0.676	INTRON Ptp99A
3R	25240158	3R_25240158_SNP [dm3] 3R_29414436_SNP [dm6]	A	C	4.465e^-5	0.676	INTRON Ptp99A
3R	25240160	3R_25240160_DEL [dm3] 3R_29414438_DEL [dm6]	CTGAATA	C	4.465e^-5	0.676	INTRON Ptp99A
3R	25240168	3R_25240168_SNP [dm3] 3R_29414446_SNP [dm6]	T	C	4.465e^-5	0.676	INTRON Ptp99A
3R	25240182	3R_25240182_SNP [dm3] 3R_29414460_SNP [dm6]	C	T	4.465e^-5	0.676	INTRON Ptp99A
3R	25240187	3R_25240187_SNP [dm3] 3R_29414465_SNP [dm6]	T	C	4.465e^-5	0.676	INTRON Ptp99A
X	7476103	X_7476103_DEL [dm3] X_7582070_DEL [dm6]	TAAAAT	T	4.466e^-5	0.676	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	8390565	2L_8390565_SNP [dm3] 2L_8390565_SNP [dm6]	C	A	4.511e^-5	0.676	NON_SYNONYMOUS_CODING CG42820 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21963132	3R_21963132_SNP [dm3] 3R_26137410_SNP [dm6]	C	A	4.519e^-5	0.676	DOWNSTREAM CG6142 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
X	10619720	X_10619720_SNP [dm3] X_10725687_SNP [dm6]	G	C	4.536e^-5	0.676	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5702877	2L_5702877_SNP [dm3] 2L_5702877_SNP [dm6]	T	C	4.539e^-5	0.676	INTERGENIC
X	10619759	X_10619759_SNP [dm3] X_10725726_SNP [dm6]	C	G	4.558e^-5	0.676	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3475521	X_3475521_INS [dm3] X_3581488_INS [dm6]	T	TCAAAATTTGACATATTT...	4.563e^-5	0.676	INTRON AstA-R1
2L	5954897	2L_5954897_SNP [dm3] 2L_5954897_SNP [dm6]	A	C	4.633e^-5	0.676	NON_SYNONYMOUS_CODING CG9044 DOWNSTREAM CG13999	TF binding site mE1_TFBS_inv
X	7407114	X_7407114_SNP [dm3] X_7513081_SNP [dm6]	T	G	4.654e^-5	0.676	INTRON CG32719
2L	3521484	2L_3521484_SNP [dm3] 2L_3521484_SNP [dm6]	G	A	4.691e^-5	0.676	SYNONYMOUS_CODING CG8851	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	7476212	X_7476212_DEL [dm3] X_7582179_DEL [dm6]	CC	C	4.699e^-5	0.676	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5335435	2L_5335435_SNP [dm3] 2L_5335435_SNP [dm6]	G	A	4.730e^-5	0.676	INTRON fusl
3L	2119191	3L_2119191_INS [dm3] 3L_2119191_INS [dm6]	A	AGTATTGATAGTACGTAGAT...	4.735e^-5	0.676	INTRON zormin
2L	4546219	2L_4546219_SNP [dm3] 2L_4546219_SNP [dm6]	G	T	4.820e^-5	0.676	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16334434	3L_16334434_SNP [dm3] 3L_16341334_SNP [dm6]	A	C	4.823e^-5	0.676	SYNONYMOUS_CODING CG4998	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4560307	2L_4560307_SNP [dm3] 2L_4560307_SNP [dm6]	T	G	5.003e^-5	0.676	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18743682	2R_18743682_SNP [dm3] 2R_22856159_SNP [dm6]	T	C	5.038e^-5	0.676	SYNONYMOUS_CODING inaD DOWNSTREAM RpL23	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5809463	X_5809463_SNP [dm3] X_5915430_SNP [dm6]	C	A	5.099e^-5	0.676	UPSTREAM CG3011 DOWNSTREAM CR44108 INTRON CG3011
3R	7462458	3R_7462458_SNP [dm3] 3R_11636736_SNP [dm6]	G	A	5.102e^-5	0.676	SYNONYMOUS_CODING Csk UPSTREAM CR44137	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10458800	X_10458800_SNP [dm3] X_10564767_SNP [dm6]	T	C	5.130e^-5	0.676	INTRON spri
3R	12675040	3R_12675040_SNP [dm3] 3R_16849318_SNP [dm6]	G	A	5.131e^-5	0.676	UPSTREAM iab-8 & 1 other INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21157429	3R_21157429_SNP [dm3] 3R_25331707_SNP [dm6]	C	G	5.133e^-5	0.676	UTR_3_PRIME CG10669 UPSTREAM CHKov2	TF binding site mE1_TFBS_cad
3R	20017110	3R_20017110_SNP [dm3] 3R_24191388_SNP [dm6]	C	T	5.138e^-5	0.676	NON_SYNONYMOUS_CODING jnj
3R	18422040	3R_18422040_DEL [dm3] 3R_22596318_DEL [dm6]	TT	T	5.172e^-5	0.676	INTRON Efa6
2L	7964017	2L_7964017_SNP [dm3] 2L_7964017_SNP [dm6]	A	C	5.194e^-5	0.676	INTRON Snoo
2R	14071036	2R_14071036_SNP [dm3] 2R_18183531_SNP [dm6]	T	C	5.206e^-5	0.676	SYNONYMOUS_CODING CG5721 DOWNSTREAM CG33958	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	7550745	2L_7550745_SNP [dm3] 2L_7550745_SNP [dm6]	T	G	5.296e^-5	0.676	INTRON RapGAP1
2R	14069917	2R_14069917_INS [dm3] 2R_18182412_INS [dm6]	C	CC	5.384e^-5	0.676	UTR_3_PRIME nopo DOWNSTREAM CG5721
2R	14060476	2R_14060476_SNP [dm3] 2R_18172971_SNP [dm6]	T	C	5.392e^-5	0.676	UPSTREAM CR45315 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18399872	2R_18399872_SNP [dm3] 2R_22512367_SNP [dm6]	C	G	5.417e^-5	0.676	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3R	25240152	3R_25240152_SNP [dm3] 3R_29414430_SNP [dm6]	G	C	5.442e^-5	0.676	INTRON Ptp99A
X	6124507	X_6124507_SNP [dm3] X_6230474_SNP [dm6]	C	T	5.458e^-5	0.676	SYNONYMOUS_CODING CG14446
3L	18344282	3L_18344282_SNP [dm3] 3L_18351182_SNP [dm6]	T	A	5.479e^-5	0.676	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11644789	2L_11644789_SNP [dm3] 2L_11644789_SNP [dm6]	A	G	5.482e^-5	0.676	UTR_3_PRIME CG6614 DOWNSTREAM CG6614
3R	11598278	3R_11598278_SNP [dm3] 3R_15772556_SNP [dm6]	G	A	5.713e^-5	0.696	INTERGENIC
3L	1676385	3L_1676385_SNP [dm3] 3L_1676385_SNP [dm6]	T	C	5.714e^-5	0.696	INTRON CG7991
3R	9530909	3R_9530909_SNP [dm3] 3R_13705187_SNP [dm6]	C	T	5.822e^-5	0.704	INTRON Adgf-D
2R	17139051	2R_17139051_SNP [dm3] 2R_21251546_SNP [dm6]	G	T	5.940e^-5	0.711	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	7531767	2L_7531767_SNP [dm3] 2L_7531767_SNP [dm6]	A	G	5.950e^-5	0.711	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24767972	3R_24767972_SNP [dm3] 3R_28942250_SNP [dm6]	G	C	5.986e^-5	0.711	INTRON CG14521
2L	10130774	2L_10130774_SNP [dm3] 2L_10130774_SNP [dm6]	T	C	6.128e^-5	0.723	INTRON CG44153
3R	20017063	3R_20017063_SNP [dm3] 3R_24191341_SNP [dm6]	A	G	6.286e^-5	0.733	INTRON jnj
2L	7531766	2L_7531766_SNP [dm3] 2L_7531766_SNP [dm6]	T	A	6.292e^-5	0.733	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	16507335	3L_16507335_SNP [dm3] 3L_16514235_SNP [dm6]	T	C	6.350e^-5	0.735	INTRON CG43373
3L	4136276	3L_4136276_SNP [dm3] 3L_4136276_SNP [dm6]	G	T	6.474e^-5	0.741	UPSTREAM RfC4 DOWNSTREAM Rop INTERGENIC
X	7476681	X_7476681_INS [dm3] X_7582648_INS [dm6]	T	TTAT	6.528e^-5	0.741	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	5869038	3R_5869038_SNP [dm3] 3R_10043316_SNP [dm6]	C	T	6.580e^-5	0.741	UTR_5_PRIME CG3909 UPSTREAM Mical	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	5809426	X_5809426_SNP [dm3] X_5915393_SNP [dm6]	G	A	6.583e^-5	0.741	UPSTREAM CG3011 DOWNSTREAM CR44108 INTRON CG3011
3L	11252075	3L_11252075_SNP [dm3] 3L_11258975_SNP [dm6]	G	A	6.785e^-5	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	4663885	2R_4663885_SNP [dm3] 2R_8776380_SNP [dm6]	T	C	6.824e^-5	0.741	INTERGENIC
X	16914315	X_16914315_SNP [dm3] X_17020282_SNP [dm6]	T	C	6.863e^-5	0.741	INTRON CG45002
2L	9705934	2L_9705934_SNP [dm3] 2L_9705934_SNP [dm6]	C	T	6.887e^-5	0.741	UTR_5_PRIME CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	7499641	2L_7499641_SNP [dm3] 2L_7499641_SNP [dm6]	A	G	6.909e^-5	0.741	SYNONYMOUS_CODING RapGAP1	TF binding site mE1_TFBS_cad
X	7454686	X_7454686_SNP [dm3] X_7560653_SNP [dm6]	A	G	6.940e^-5	0.741	INTERGENIC
X	19297289	X_19297289_SNP [dm3] X_19403256_SNP [dm6]	G	A	6.966e^-5	0.741	INTRON kek5
X	5251852	X_5251852_SNP [dm3] X_5357819_SNP [dm6]	G	T	6.966e^-5	0.741	UPSTREAM SK INTRON SK
X	9497043	X_9497043_SNP [dm3] X_9603010_SNP [dm6]	G	A	6.976e^-5	0.741	SYNONYMOUS_CODING Gga	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3553217	2L_3553217_SNP [dm3] 2L_3553217_SNP [dm6]	C	A	7.018e^-5	0.741	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	12342361	2R_12342361_SNP [dm3] 2R_16454856_SNP [dm6]	C	G	7.019e^-5	0.741	INTERGENIC
3R	11602954	3R_11602954_SNP [dm3] 3R_15777232_SNP [dm6]	C	G	7.046e^-5	0.741	SYNONYMOUS_CODING CG4525
3R	10504094	3R_10504094_SNP [dm3] 3R_14678372_SNP [dm6]	C	A	7.077e^-5	0.741	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	10619760	X_10619760_SNP [dm3] X_10725727_SNP [dm6]	T	A	7.113e^-5	0.741	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4561528	2L_4561528_SNP [dm3] 2L_4561528_SNP [dm6]	G	T	7.235e^-5	0.746	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12851508	X_12851508_SNP [dm3] X_12957475_SNP [dm6]	G	T	7.237e^-5	0.746	UPSTREAM hec INTERGENIC
2R	14070945	2R_14070945_SNP [dm3] 2R_18183440_SNP [dm6]	T	A	7.392e^-5	0.748	NON_SYNONYMOUS_CODING CG5721 DOWNSTREAM nopo & 1 other	TF binding site mE1_TFBS_sens
X	19699566	X_19699566_SNP [dm3] X_19805533_SNP [dm6]	G	T	7.403e^-5	0.748	INTERGENIC
2L	8474388	2L_8474388_SNP [dm3] 2L_8474388_SNP [dm6]	T	C	7.425e^-5	0.748	INTRON d
2R	5814960	2R_5814960_SNP [dm3] 2R_9927455_SNP [dm6]	C	T	7.481e^-5	0.748	INTRON Mef2
X	13041608	X_13041608_SNP [dm3] X_13147575_SNP [dm6]	T	C	7.511e^-5	0.748	INTRON CG32645
X	18160684	X_18160684_SNP [dm3] X_18266651_SNP [dm6]	A	G	7.581e^-5	0.748	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10820205	2L_10820205_SNP [dm3] 2L_10820205_SNP [dm6]	G	A	7.595e^-5	0.748	STOP_GAINED CG6508 UPSTREAM CG17134 INTRON Nos	TF binding site mE1_TFBS_cad
3R	26925695	3R_26925695_SNP [dm3] 3R_31099973_SNP [dm6]	T	G	7.597e^-5	0.748	SYNONYMOUS_CODING CG15553
2L	12626575	2L_12626575_SNP [dm3] 2L_12626575_SNP [dm6]	T	C	7.632e^-5	0.748	SYNONYMOUS_CODING nub INTRON Ref2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3060270	2L_3060270_SNP [dm3] 2L_3060270_SNP [dm6]	T	G	7.662e^-5	0.748	NON_SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14693012	X_14693012_SNP [dm3] X_14798979_SNP [dm6]	A	C	7.694e^-5	0.748	NON_SYNONYMOUS_CODING rut	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8174241	2L_8174241_SNP [dm3] 2L_8174241_SNP [dm6]	C	T	7.732e^-5	0.748	SYNONYMOUS_CODING Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15108648	3R_15108648_SNP [dm3] 3R_19282926_SNP [dm6]	A	C	7.783e^-5	0.749	INTERGENIC
X	3475542	X_3475542_INS [dm3] X_3581509_INS [dm6]	T	TACATCATTTACATCAAAT...	7.880e^-5	0.749	INTRON AstA-R1
2L	4560748	2L_4560748_SNP [dm3] 2L_4560748_SNP [dm6]	A	G	7.940e^-5	0.749	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7531814	2L_7531814_DEL [dm3] 2L_7531814_DEL [dm6]	ATA	A	7.952e^-5	0.749	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	3475517	X_3475517_SNP [dm3] X_3581484_SNP [dm6]	A	T	7.959e^-5	0.749	INTRON AstA-R1
3R	7517459	3R_7517459_SNP [dm3] 3R_11691737_SNP [dm6]	C	A	8.003e^-5	0.749	NON_SYNONYMOUS_CODING CG18765	TF binding site mE1_TFBS_sens
2L	7531779	2L_7531779_SNP [dm3] 2L_7531779_SNP [dm6]	A	C	8.024e^-5	0.749	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	3475510	X_3475510_SNP [dm3] X_3581477_SNP [dm6]	A	G	8.145e^-5	0.756	INTRON AstA-R1
3R	11594071	3R_11594071_SNP [dm3] 3R_15768349_SNP [dm6]	T	C	8.206e^-5	0.757	UPSTREAM CG5623 INTERGENIC
2L	4792986	2L_4792986_SNP [dm3] 2L_4792986_SNP [dm6]	A	T	8.261e^-5	0.757	INTRON CG15630	TF binding site mE1_TFBS_HSA
2L	3242084	2L_3242084_SNP [dm3] 2L_3242084_SNP [dm6]	A	C	8.300e^-5	0.757	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	7462233	3R_7462233_SNP [dm3] 3R_11636511_SNP [dm6]	G	C	8.317e^-5	0.757	SYNONYMOUS_CODING Csk UPSTREAM CR44137	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6472567	3R_6472567_SNP [dm3] 3R_10646845_SNP [dm6]	G	A	8.352e^-5	0.757	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
3L	424487	3L_424487_SNP [dm3] 3L_424487_SNP [dm6]	G	C	8.395e^-5	0.757	INTERGENIC
3R	11601057	3R_11601057_SNP [dm3] 3R_15775335_SNP [dm6]	A	T	8.496e^-5	0.757	UPSTREAM CR45206 INTRON CG4525 EXON CR45207	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11252247	3L_11252247_SNP [dm3] 3L_11259147_SNP [dm6]	A	G	8.521e^-5	0.757	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19499549	2R_19499549_SNP [dm3] 2R_23612026_SNP [dm6]	G	A	8.542e^-5	0.757	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13448434	2L_13448434_SNP [dm3] 2L_13448434_SNP [dm6]	T	A	8.579e^-5	0.757	NON_SYNONYMOUS_CODING Hsp60D INTRON CG42784
3L	3324978	3L_3324978_SNP [dm3] 3L_3324978_SNP [dm6]	A	C	8.603e^-5	0.757	SYNONYMOUS_CODING CG11526	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12672573	3R_12672573_SNP [dm3] 3R_16846851_SNP [dm6]	G	C	8.635e^-5	0.757	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	10433840	X_10433840_SNP [dm3] X_10539807_SNP [dm6]	T	C	8.709e^-5	0.76	INTRON spri	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18435033	2R_18435033_SNP [dm3] 2R_22547528_SNP [dm6]	C	A	8.769e^-5	0.761	UPSTREAM px INTRON px
2R	18434933	2R_18434933_SNP [dm3] 2R_22547428_SNP [dm6]	G	A	8.896e^-5	0.766	UPSTREAM px INTRON px
3R	6389453	3R_6389453_INS [dm3] 3R_10563731_INS [dm6]	A	AA	8.902e^-5	0.766	INTRON hth
3R	20017323	3R_20017323_SNP [dm3] 3R_24191601_SNP [dm6]	C	T	9.249e^-5	0.789	NON_SYNONYMOUS_CODING jnj
X	11438063	X_11438063_SNP [dm3] X_11544030_SNP [dm6]	C	T	9.289e^-5	0.789	INTRON Drak	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	18399972	2R_18399972_SNP [dm3] 2R_22512467_SNP [dm6]	T	G	9.331e^-5	0.789	INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	14176874	2R_14176874_SNP [dm3] 2R_18289369_SNP [dm6]	T	A	9.340e^-5	0.789	UPSTREAM sbb INTRON sbb & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
2L	8256721	2L_8256721_SNP [dm3] 2L_8256721_SNP [dm6]	G	A	9.419e^-5	0.792	INTRON CG8086
2R	14071823	2R_14071823_SNP [dm3] 2R_18184318_SNP [dm6]	A	G	9.461e^-5	0.792	UPSTREAM CG5721 DOWNSTREAM CG33958 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	4503414	2L_4503414_SNP [dm3] 2L_4503414_SNP [dm6]	T	A	9.509e^-5	0.792	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8329550	2L_8329550_SNP [dm3] 2L_8329550_SNP [dm6]	C	A	9.543e^-5	0.792	INTRON CG14275
3L	8330558	3L_8330558_SNP [dm3] 3L_8337458_SNP [dm6]	C	G	9.732e^-5	0.793	INTRON Cpr66Cb
2L	912495	2L_912495_SNP [dm3] 2L_912495_SNP [dm6]	A	G	9.737e^-5	0.793	DOWNSTREAM CR44061 INTERGENIC
3L	2538279	3L_2538279_SNP [dm3] 3L_2538279_SNP [dm6]	T	A	9.786e^-5	0.793	INTRON Spn
2L	376463	2L_376463_SNP [dm3] 2L_376463_SNP [dm6]	C	T	9.798e^-5	0.793	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
2R	11041805	2R_11041805_SNP [dm3] 2R_15154300_SNP [dm6]	T	A	9.806e^-5	0.793	INTERGENIC
2L	4503091	2L_4503091_SNP [dm3] 2L_4503091_SNP [dm6]	T	G	9.865e^-5	0.793	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20017058	3R_20017058_SNP [dm3] 3R_24191336_SNP [dm6]	C	T	9.881e^-5	0.793	INTRON jnj
2L	4549226	2L_4549226_INS [dm3] 2L_4549226_INS [dm6]	T	TT	9.896e^-5	0.793	INTRON dp
2L	7303293	2L_7303293_SNP [dm3] 2L_7303293_SNP [dm6]	A	T	9.960e^-5	0.795	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	11607626	3R_11607626_SNP [dm3] 3R_15781904_SNP [dm6]	C	A	1.009e^-4	0.798	DOWNSTREAM CG5614 INTERGENIC
3R	11607685	3R_11607685_SNP [dm3] 3R_15781963_SNP [dm6]	G	A	1.009e^-4	0.798	DOWNSTREAM CG5614 INTERGENIC
2R	6914501	2R_6914501_SNP [dm3] 2R_11026996_SNP [dm6]	T	G	1.017e^-4	0.798	INTRON luna
3R	11604006	3R_11604006_SNP [dm3] 3R_15778284_SNP [dm6]	A	C	1.017e^-4	0.798	DOWNSTREAM CG4525 INTERGENIC
2L	4457560	2L_4457560_DEL [dm3] 2L_4457560_DEL [dm6]	GG	G	1.027e^-4	0.798	UPSTREAM Gs1l DOWNSTREAM snoRNA:Me18S-C1831 INTRON RpL27A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	4560721	2L_4560721_SNP [dm3] 2L_4560721_SNP [dm6]	A	T	1.030e^-4	0.798	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	14176859	2R_14176859_SNP [dm3] 2R_18289354_SNP [dm6]	A	T	1.034e^-4	0.798	UPSTREAM sbb INTRON sbb & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
2L	376430	2L_376430_SNP [dm3] 2L_376430_SNP [dm6]	C	T	1.036e^-4	0.798	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
3L	7147859	3L_7147859_SNP [dm3] 3L_7154759_SNP [dm6]	T	C	1.038e^-4	0.798	INTRON corn	TF binding site BDTNP1_TFBS_twi
2L	7531782	2L_7531782_SNP [dm3] 2L_7531782_SNP [dm6]	T	C	1.047e^-4	0.798	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7531785	2L_7531785_SNP [dm3] 2L_7531785_SNP [dm6]	T	A	1.047e^-4	0.798	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	3475396	X_3475396_SNP [dm3] X_3581363_SNP [dm6]	G	A	1.066e^-4	0.807	INTRON AstA-R1
3L	13190768	3L_13190768_SNP [dm3] 3L_13197668_SNP [dm6]	T	C	1.067e^-4	0.807	INTERGENIC	silencer mE1_HDAC_PRE
2R	10467808	2R_10467808_SNP [dm3] 2R_14580303_SNP [dm6]	T	C	1.085e^-4	0.809	INTRON ttv
3R	20380843	3R_20380843_SNP [dm3] 3R_24555121_SNP [dm6]	T	A	1.086e^-4	0.809	SYNONYMOUS_CODING Esyt2 UPSTREAM tRNA:D:96A & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	4457556	2L_4457556_SNP [dm3] 2L_4457556_SNP [dm6]	A	G	1.095e^-4	0.809	UPSTREAM Gs1l DOWNSTREAM snoRNA:Me18S-C1831 INTRON RpL27A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	11607693	3R_11607693_SNP [dm3] 3R_15781971_SNP [dm6]	C	T	1.095e^-4	0.809	DOWNSTREAM CG5614 INTERGENIC
3R	24767970	3R_24767970_SNP [dm3] 3R_28942248_SNP [dm6]	T	A	1.096e^-4	0.809	INTRON CG14521
2L	3063372	2L_3063372_SNP [dm3] 2L_3063372_SNP [dm6]	G	A	1.106e^-4	0.809	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16855577	2L_16855577_SNP [dm3] 2L_16855577_SNP [dm6]	C	T	1.111e^-4	0.809	INTRON CG31809	transposable element FlyBase
X	10619611	X_10619611_SNP [dm3] X_10725578_SNP [dm6]	A	G	1.116e^-4	0.809	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6127989	2L_6127989_SNP [dm3] 2L_6127989_SNP [dm6]	G	T	1.117e^-4	0.809	SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730 UPSTREAM WDR79	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20017162	3R_20017162_SNP [dm3] 3R_24191440_SNP [dm6]	T	C	1.119e^-4	0.809	NON_SYNONYMOUS_CODING jnj
2L	4546687	2L_4546687_SNP [dm3] 2L_4546687_SNP [dm6]	A	G	1.119e^-4	0.809	NON_SYNONYMOUS_CODING dp INTRON dp
3R	12678776	3R_12678776_SNP [dm3] 3R_16853054_SNP [dm6]	G	A	1.122e^-4	0.809	INTRON iab-8 & 1 other EXON iab-4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	7531788	2L_7531788_SNP [dm3] 2L_7531788_SNP [dm6]	A	C	1.128e^-4	0.809	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18434609	2R_18434609_SNP [dm3] 2R_22547104_SNP [dm6]	C	T	1.131e^-4	0.809	UPSTREAM px INTRON px
2L	3059151	2L_3059151_SNP [dm3] 2L_3059151_SNP [dm6]	G	A	1.161e^-4	0.826	INTRON CG3523	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	18279776	2R_18279776_SNP [dm3] 2R_22392271_SNP [dm6]	G	A	1.163e^-4	0.826	INTRON CG13506	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1552225	2L_1552225_SNP [dm3] 2L_1552225_SNP [dm6]	A	G	1.169e^-4	0.826	INTERGENIC
2L	7531776	2L_7531776_SNP [dm3] 2L_7531776_SNP [dm6]	A	T	1.175e^-4	0.826	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	20571671	3L_20571671_SNP [dm3] 3L_20578571_SNP [dm6]	G	A	1.176e^-4	0.826	INTERGENIC
X	9110798	X_9110798_DEL [dm3] X_9216765_DEL [dm6]	TATTGT	T	1.189e^-4	0.826	UPSTREAM CG15369 DOWNSTREAM CG15368 & 1 other INTERGENIC
2L	2023274	2L_2023274_SNP [dm3] 2L_2023274_SNP [dm6]	T	C	1.189e^-4	0.826	UPSTREAM CG4238 INTRON CG4238
3R	15108621	3R_15108621_SNP [dm3] 3R_19282899_SNP [dm6]	G	A	1.189e^-4	0.826	INTERGENIC
2L	11035154	2L_11035154_SNP [dm3] 2L_11035154_SNP [dm6]	G	A	1.205e^-4	0.834	SYNONYMOUS_CODING CG18666 INTRON Samuel	TF binding site mE1_TFBS_cad
2R	18399763	2R_18399763_SNP [dm3] 2R_22512258_SNP [dm6]	G	A	1.233e^-4	0.836	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
X	9637398	X_9637398_SNP [dm3] X_9743365_SNP [dm6]	C	A	1.233e^-4	0.836	INTRON Sp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	10306267	X_10306267_SNP [dm3] X_10412234_SNP [dm6]	G	A	1.235e^-4	0.836	UTR_3_PRIME CG32683
3R	5151733	3R_5151733_SNP [dm3] 3R_9326011_SNP [dm6]	T	A	1.239e^-4	0.836	INTRON CG8861
2L	7429133	2L_7429133_SNP [dm3] 2L_7429133_SNP [dm6]	T	A	1.239e^-4	0.836	INTRON CG5261
2L	1636997	2L_1636997_SNP [dm3] 2L_1636997_SNP [dm6]	C	G	1.241e^-4	0.836	INTERGENIC
3R	11607625	3R_11607625_SNP [dm3] 3R_15781903_SNP [dm6]	G	A	1.245e^-4	0.836	DOWNSTREAM CG5614 INTERGENIC
3R	11596458	3R_11596458_SNP [dm3] 3R_15770736_SNP [dm6]	T	C	1.248e^-4	0.836	INTERGENIC
2L	14390319	2L_14390319_SNP [dm3] 2L_14390319_SNP [dm6]	C	T	1.252e^-4	0.836	DOWNSTREAM elB INTERGENIC
3R	11600646	3R_11600646_SNP [dm3] 3R_15774924_SNP [dm6]	G	A	1.255e^-4	0.836	UPSTREAM CR45206 DOWNSTREAM CR45207 INTRON CG4525 EXON CR45207	TF binding site mE1_TFBS_inv
3L	5044475	3L_5044475_INS [dm3] 3L_5044475_INS [dm6]	G	GG	1.258e^-4	0.836	INTRON Con
3L	8027740	3L_8027740_SNP [dm3] 3L_8034640_SNP [dm6]	C	A	1.265e^-4	0.838	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	16264777	3R_16264777_SNP [dm3] 3R_20439055_SNP [dm6]	A	C	1.276e^-4	0.843	INTRON Gfrl
3R	20380855	3R_20380855_SNP [dm3] 3R_24555133_SNP [dm6]	G	A	1.288e^-4	0.847	SPLICE_SITE_REGION Esyt2 SYNONYMOUS_CODING Esyt2 UPSTREAM tRNA:D:96A & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	7476049	X_7476049_SNP [dm3] X_7582016_SNP [dm6]	A	G	1.295e^-4	0.849	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	5807890	X_5807890_SNP [dm3] X_5913857_SNP [dm6]	G	A	1.304e^-4	0.852	SYNONYMOUS_CODING CG3011 UPSTREAM CR44108 DOWNSTREAM CG12236	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6373171	3L_6373171_SNP [dm3] 3L_6380071_SNP [dm6]	G	A	1.313e^-4	0.854	INTERGENIC
2L	8474238	2L_8474238_INS [dm3] 2L_8474238_INS [dm6]	A	ACATA	1.330e^-4	0.854	INTRON d
2L	7531780	2L_7531780_SNP [dm3] 2L_7531780_SNP [dm6]	G	T	1.333e^-4	0.854	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4554210	2L_4554210_SNP [dm3] 2L_4554210_SNP [dm6]	A	C	1.333e^-4	0.854	SPLICE_SITE_REGION dp INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4558867	2L_4558867_SNP [dm3] 2L_4558867_SNP [dm6]	G	A	1.335e^-4	0.854	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	12677977	3R_12677977_SNP [dm3] 3R_16852255_SNP [dm6]	A	C	1.335e^-4	0.854	INTRON iab-8 & 1 other EXON iab-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6232295	3R_6232295_SNP [dm3] 3R_10406573_SNP [dm6]	C	T	1.338e^-4	0.854	INTRON CG6325
2L	3848196	2L_3848196_SNP [dm3] 2L_3848196_SNP [dm6]	G	T	1.355e^-4	0.862	INTERGENIC
3L	16333699	3L_16333699_SNP [dm3] 3L_16340599_SNP [dm6]	G	A	1.369e^-4	0.864	SYNONYMOUS_CODING CG4998	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	302568	3L_302568_SNP [dm3] 3L_302568_SNP [dm6]	C	T	1.371e^-4	0.864	INTRON RhoGEF3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21156761	3R_21156761_SNP [dm3] 3R_25331039_SNP [dm6]	T	C	1.373e^-4	0.864	SYNONYMOUS_CODING CHKov2 DOWNSTREAM CG10669
2L	4454011	2L_4454011_SNP [dm3] 2L_4454011_SNP [dm6]	T	C	1.399e^-4	0.864	SYNONYMOUS_CODING CG15440 UPSTREAM CG15439 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11644520	2L_11644520_SNP [dm3] 2L_11644520_SNP [dm6]	A	T	1.402e^-4	0.864	DOWNSTREAM CG6614 INTERGENIC
3L	302483	3L_302483_SNP [dm3] 3L_302483_SNP [dm6]	C	A	1.407e^-4	0.864	SYNONYMOUS_CODING RhoGEF3	TF binding site mE1_TFBS_HSA
2L	3061029	2L_3061029_SNP [dm3] 2L_3061029_SNP [dm6]	T	C	1.408e^-4	0.864	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6914512	2R_6914512_SNP [dm3] 2R_11027007_SNP [dm6]	C	A	1.408e^-4	0.864	INTRON luna
3L	833339	3L_833339_SNP [dm3] 3L_833339_SNP [dm6]	T	G	1.409e^-4	0.864	UTR_5_PRIME CG13900 UPSTREAM snoRNA:Psi28S-3308 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
2L	4503285	2L_4503285_SNP [dm3] 2L_4503285_SNP [dm6]	G	A	1.410e^-4	0.864	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19499551	2R_19499551_SNP [dm3] 2R_23612028_SNP [dm6]	T	A	1.416e^-4	0.864	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3985553	3L_3985553_SNP [dm3] 3L_3985553_SNP [dm6]	G	A	1.416e^-4	0.864	INTRON scrt
3L	833265	3L_833265_SNP [dm3] 3L_833265_SNP [dm6]	G	A	1.425e^-4	0.864	UTR_5_PRIME CG13900 UPSTREAM snoRNA:Psi28S-3308 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
2L	8275470	2L_8275470_SNP [dm3] 2L_8275470_SNP [dm6]	T	C	1.427e^-4	0.864	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	21156847	3R_21156847_SNP [dm3] 3R_25331125_SNP [dm6]	G	T	1.428e^-4	0.864	NON_SYNONYMOUS_CODING CHKov2 DOWNSTREAM CG10669
X	15479466	X_15479466_SNP [dm3] X_15585433_SNP [dm6]	A	G	1.439e^-4	0.866	UTR_3_PRIME CG9220 DOWNSTREAM CG8097
2R	6847980	2R_6847980_SNP [dm3] 2R_10960475_SNP [dm6]	T	C	1.443e^-4	0.866	INTERGENIC
X	5251777	X_5251777_SNP [dm3] X_5357744_SNP [dm6]	G	C	1.450e^-4	0.866	UPSTREAM SK INTRON SK
3L	2422207	3L_2422207_SNP [dm3] 3L_2422207_SNP [dm6]	C	G	1.451e^-4	0.866	INTRON CG45186	TF binding site mE1_TFBS_inv
3L	10103699	3L_10103699_SNP [dm3] 3L_10110599_SNP [dm6]	A	G	1.462e^-4	0.87	INTRON dpr6	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sbb
2R	16296397	2R_16296397_SNP [dm3] 2R_20408892_SNP [dm6]	G	A	1.467e^-4	0.87	INTERGENIC
2L	7542914	2L_7542914_SNP [dm3] 2L_7542914_SNP [dm6]	G	A	1.471e^-4	0.87	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	12050914	2L_12050914_SNP [dm3] 2L_12050914_SNP [dm6]	T	C	1.482e^-4	0.874	SYNONYMOUS_CODING CG14945 DOWNSTREAM JhI-21
X	18748928	X_18748928_SNP [dm3] X_18854895_SNP [dm6]	A	G	1.487e^-4	0.874	NON_SYNONYMOUS_CODING CG34422 DOWNSTREAM CG7322	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3246156	2R_3246156_SNP [dm3] 2R_7358651_SNP [dm6]	T	C	1.501e^-4	0.88	SYNONYMOUS_CODING Dscam1 INTRON Dscam1
2R	15120246	2R_15120246_SNP [dm3] 2R_19232741_SNP [dm6]	C	T	1.506e^-4	0.88	INTRON cora	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18279749	2R_18279749_SNP [dm3] 2R_22392244_SNP [dm6]	A	G	1.527e^-4	0.882	SPLICE_SITE_REGION CG13506 INTRON CG13506	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19664029	X_19664029_SNP [dm3] X_19769996_SNP [dm6]	C	T	1.527e^-4	0.882	INTRON vfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17542666	2L_17542666_SNP [dm3] 2L_17542666_SNP [dm6]	T	A	1.532e^-4	0.882	DOWNSTREAM CR43304 INTERGENIC
2L	12227586	2L_12227586_SNP [dm3] 2L_12227586_SNP [dm6]	C	A	1.537e^-4	0.882	INTRON aret
3L	11251966	3L_11251966_SNP [dm3] 3L_11258866_SNP [dm6]	G	T	1.545e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7320170	2L_7320170_SNP [dm3] 2L_7320170_SNP [dm6]	T	G	1.551e^-4	0.882	INTERGENIC
2L	7301424	2L_7301424_SNP [dm3] 2L_7301424_SNP [dm6]	A	T	1.553e^-4	0.882	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	7552616	3R_7552616_SNP [dm3] 3R_11726894_SNP [dm6]	A	T	1.554e^-4	0.882	INTRON CG12594
2L	7590833	2L_7590833_SNP [dm3] 2L_7590833_SNP [dm6]	G	A	1.556e^-4	0.882	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Kr
2L	4557544	2L_4557544_SNP [dm3] 2L_4557544_SNP [dm6]	C	T	1.559e^-4	0.882	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18230657	3R_18230657_SNP [dm3] 3R_22404935_SNP [dm6]	T	G	1.562e^-4	0.882	SYNONYMOUS_CODING CG13856
3R	21156730	3R_21156730_SNP [dm3] 3R_25331008_SNP [dm6]	T	C	1.592e^-4	0.893	NON_SYNONYMOUS_CODING CHKov2 DOWNSTREAM CG10669
3L	1676796	3L_1676796_SNP [dm3] 3L_1676796_SNP [dm6]	C	T	1.594e^-4	0.893	INTRON CG7991
2R	11906817	2R_11906817_SNP [dm3] 2R_16019312_SNP [dm6]	T	C	1.596e^-4	0.893	INTRON CG8399
2L	4495808	2L_4495808_SNP [dm3] 2L_4495808_SNP [dm6]	C	T	1.599e^-4	0.893	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7320026	2L_7320026_SNP [dm3] 2L_7320026_SNP [dm6]	C	T	1.607e^-4	0.894	INTERGENIC
2L	7531789	2L_7531789_SNP [dm3] 2L_7531789_SNP [dm6]	G	T	1.632e^-4	0.899	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18279754	2R_18279754_SNP [dm3] 2R_22392249_SNP [dm6]	A	G	1.639e^-4	0.899	SPLICE_SITE_REGION CG13506 INTRON CG13506	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16044794	2R_16044794_SNP [dm3] 2R_20157289_SNP [dm6]	T	C	1.639e^-4	0.899	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25409161	3R_25409161_SNP [dm3] 3R_29583439_SNP [dm6]	T	G	1.641e^-4	0.899	INTERGENIC
2R	17643902	2R_17643902_DEL [dm3] 2R_21756397_DEL [dm6]	GG	G	1.642e^-4	0.899	UPSTREAM Grx-1 INTERGENIC
3L	5238270	3L_5238270_SNP [dm3] 3L_5245170_SNP [dm6]	A	G	1.644e^-4	0.899	INTRON shep
3R	11606815	3R_11606815_SNP [dm3] 3R_15781093_SNP [dm6]	A	T	1.654e^-4	0.901	DOWNSTREAM CG5614 INTERGENIC
2L	8171710	2L_8171710_SNP [dm3] 2L_8171710_SNP [dm6]	T	G	1.665e^-4	0.902	INTRON Piezo
2R	13561708	2R_13561708_SNP [dm3] 2R_17674203_SNP [dm6]	A	G	1.671e^-4	0.902	UTR_3_PRIME Sema-1b
2R	18279787	2R_18279787_SNP [dm3] 2R_22392282_SNP [dm6]	A	C	1.672e^-4	0.902	INTRON CG13506	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2307286	2L_2307286_SNP [dm3] 2L_2307286_SNP [dm6]	C	T	1.677e^-4	0.902	UPSTREAM CG16995 INTERGENIC
2R	10006498	2R_10006498_SNP [dm3] 2R_14118993_SNP [dm6]	C	G	1.680e^-4	0.902	INTRON Prosap
2L	2893299	2L_2893299_SNP [dm3] 2L_2893299_SNP [dm6]	G	A	1.682e^-4	0.902	INTRON lilli	TF binding site BDTNP1_TFBS_twi
3R	7174174	3R_7174174_SNP [dm3] 3R_11348452_SNP [dm6]	A	G	1.700e^-4	0.907	UTR_5_PRIME KP78b UTR_3_PRIME KP78a UPSTREAM KP78b INTRON pros	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	6886895	X_6886895_SNP [dm3] X_6992862_SNP [dm6]	A	G	1.702e^-4	0.907	SYNONYMOUS_CODING Inx7
2R	14067953	2R_14067953_SNP [dm3] 2R_18180448_SNP [dm6]	C	T	1.716e^-4	0.909	UPSTREAM nopo & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	14069196	2R_14069196_SNP [dm3] 2R_18181691_SNP [dm6]	T	A	1.716e^-4	0.909	SPLICE_SITE_REGION nopo DOWNSTREAM CG5721 INTRON nopo	TF binding site mE1_TFBS_sens
2L	16855257	2L_16855257_SNP [dm3] 2L_16855257_SNP [dm6]	C	T	1.721e^-4	0.909	INTRON CG31809
X	9637406	X_9637406_DEL [dm3] X_9743373_DEL [dm6]	TCCACCTCCT	T	1.727e^-4	0.91	INTRON Sp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	14156396	3L_14156396_SNP [dm3] 3L_14163296_SNP [dm6]	A	T	1.735e^-4	0.911	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	6501185	3R_6501185_SNP [dm3] 3R_10675463_SNP [dm6]	T	A	1.747e^-4	0.911	DOWNSTREAM CG6465 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3R	24907258	3R_24907258_DEL [dm3] 3R_29081536_DEL [dm6]	TATTATTAC	T	1.748e^-4	0.911	INTRON CG11873
3R	4042691	3R_4042691_SNP [dm3] 3R_8216969_SNP [dm6]	C	T	1.748e^-4	0.911	UPSTREAM CG7800 INTERGENIC
3R	13271279	3R_13271279_SNP [dm3] 3R_17445557_SNP [dm6]	A	T	1.756e^-4	0.911	INTRON CG5873
2R	14070550	2R_14070550_SNP [dm3] 2R_18183045_SNP [dm6]	A	G	1.758e^-4	0.911	SYNONYMOUS_CODING CG5721 DOWNSTREAM nopo	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	4549375	2L_4549375_INS [dm3] 2L_4549375_INS [dm6]	T	TT	1.770e^-4	0.913	INTRON dp
2L	2763147	2L_2763147_SNP [dm3] 2L_2763147_SNP [dm6]	G	A	1.776e^-4	0.913	DOWNSTREAM CG3077 INTRON Trn-SR
3R	23289034	3R_23289034_SNP [dm3] 3R_27463312_SNP [dm6]	C	T	1.776e^-4	0.913	UPSTREAM CG13978 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2087244	3L_2087244_SNP [dm3] 3L_2087244_SNP [dm6]	C	A	1.784e^-4	0.914	UPSTREAM CR42860 INTRON sls	TF binding site BDTNP1_TFBS_prd
X	9497052	X_9497052_SNP [dm3] X_9603019_SNP [dm6]	T	G	1.804e^-4	0.92	SYNONYMOUS_CODING Gga	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18279767	2R_18279767_SNP [dm3] 2R_22392262_SNP [dm6]	T	G	1.805e^-4	0.92	INTRON CG13506	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7531784	2L_7531784_SNP [dm3] 2L_7531784_SNP [dm6]	A	C	1.816e^-4	0.921	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12395837	2R_12395837_SNP [dm3] 2R_16508332_SNP [dm6]	G	A	1.817e^-4	0.921	INTRON Sema-2a
X	8057234	X_8057234_SNP [dm3] X_8163201_SNP [dm6]	C	T	1.844e^-4	0.931	UPSTREAM CR45536 & 1 other INTERGENIC
3R	8394807	3R_8394807_SNP [dm3] 3R_12569085_SNP [dm6]	G	T	1.847e^-4	0.931	INTRON Octbeta2R
3R	23584352	3R_23584352_SNP [dm3] 3R_27758630_SNP [dm6]	C	A	1.861e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7536885	2L_7536885_SNP [dm3] 2L_7536885_SNP [dm6]	A	G	1.875e^-4	0.935	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11389893	2L_11389893_SNP [dm3] 2L_11389893_SNP [dm6]	A	G	1.877e^-4	0.935	DOWNSTREAM CR43681 EXON CR43681	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24405664	3R_24405664_SNP [dm3] 3R_28579942_SNP [dm6]	C	A	1.880e^-4	0.935	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	14156406	3L_14156406_SNP [dm3] 3L_14163306_SNP [dm6]	A	T	1.882e^-4	0.935	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2R	5816832	2R_5816832_SNP [dm3] 2R_9929327_SNP [dm6]	A	G	1.890e^-4	0.935	UTR_5_PRIME Mef2 INTRON Mef2	regulatory region FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	4546212	2L_4546212_SNP [dm3] 2L_4546212_SNP [dm6]	G	C	1.906e^-4	0.935	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20494796	3R_20494796_SNP [dm3] 3R_24669074_SNP [dm6]	T	C	1.907e^-4	0.935	INTRON slo	regulatory region REDfly_CRMs
2L	20012064	2L_20012064_DEL [dm3] 2L_20012064_DEL [dm6]	GTTAG	G	1.916e^-4	0.935	INTRON CG43861
3R	11594134	3R_11594134_SNP [dm3] 3R_15768412_SNP [dm6]	C	T	1.924e^-4	0.935	UPSTREAM CG5623 INTERGENIC
2R	7939211	2R_7939211_SNP [dm3] 2R_12051706_SNP [dm6]	C	G	1.934e^-4	0.935	UTR_5_PRIME CG30039
2L	17270548	2L_17270548_SNP [dm3] 2L_17270548_SNP [dm6]	T	C	1.945e^-4	0.935	INTERGENIC
X	6333863	X_6333863_SNP [dm3] X_6439830_SNP [dm6]	T	C	1.948e^-4	0.935	INTRON CG42340
3R	11606660	3R_11606660_SNP [dm3] 3R_15780938_SNP [dm6]	C	T	1.948e^-4	0.935	SYNONYMOUS_CODING CG5614
3L	14562655	3L_14562655_SNP [dm3] 3L_14569555_SNP [dm6]	A	G	1.949e^-4	0.935	INTERGENIC
2L	8473952	2L_8473952_SNP [dm3] 2L_8473952_SNP [dm6]	T	C	1.949e^-4	0.935	INTRON d
2L	7418667	2L_7418667_SNP [dm3] 2L_7418667_SNP [dm6]	A	C	1.953e^-4	0.935	DOWNSTREAM chm INTRON chm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	11606714	3R_11606714_SNP [dm3] 3R_15780992_SNP [dm6]	G	A	1.957e^-4	0.935	UTR_3_PRIME CG5614
3R	21455931	3R_21455931_SNP [dm3] 3R_25630209_SNP [dm6]	G	A	1.961e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8330244	3L_8330244_SNP [dm3] 3L_8337144_SNP [dm6]	A	T	1.968e^-4	0.935	INTRON Cpr66Cb
2L	2712956	2L_2712956_INS [dm3] 2L_2712956_INS [dm6]	T	TAAGCCGGTT	1.969e^-4	0.935	INTRON CG31690
2L	4561537	2L_4561537_SNP [dm3] 2L_4561537_SNP [dm6]	A	G	1.972e^-4	0.935	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4586055	2L_4586055_SNP [dm3] 2L_4586055_SNP [dm6]	A	G	1.976e^-4	0.935	INTRON dp
2L	5954517	2L_5954517_SNP [dm3] 2L_5954517_SNP [dm6]	T	A	1.978e^-4	0.935	DOWNSTREAM CG13999 INTRON CG9044	TF binding site mE1_TFBS_inv
3R	24768402	3R_24768402_SNP [dm3] 3R_28942680_SNP [dm6]	A	T	1.979e^-4	0.935	INTRON CG14521	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8057239	X_8057239_SNP [dm3] X_8163206_SNP [dm6]	A	T	1.988e^-4	0.937	UPSTREAM CR45536 & 1 other INTERGENIC
3R	20016975	3R_20016975_SNP [dm3] 3R_24191253_SNP [dm6]	C	A	2.004e^-4	0.942	SYNONYMOUS_CODING jnj
X	7468530	X_7468530_SNP [dm3] X_7574497_SNP [dm6]	C	T	2.029e^-4	0.948	UTR_5_PRIME CG11369	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
3R	12674810	3R_12674810_SNP [dm3] 3R_16849088_SNP [dm6]	A	G	2.034e^-4	0.948	UPSTREAM iab-8 & 1 other INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	4607941	3L_4607941_SNP [dm3] 3L_4607941_SNP [dm6]	C	T	2.046e^-4	0.948	INTRON Src64B
2R	13561709	2R_13561709_SNP [dm3] 2R_17674204_SNP [dm6]	A	G	2.053e^-4	0.948	UTR_3_PRIME Sema-1b
3R	23147940	3R_23147940_SNP [dm3] 3R_27322218_SNP [dm6]	T	C	2.061e^-4	0.948	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4554214	2L_4554214_SNP [dm3] 2L_4554214_SNP [dm6]	G	A	2.062e^-4	0.948	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9642928	3R_9642928_DEL [dm3] 3R_13817206_DEL [dm6]	TT	T	2.071e^-4	0.948	DOWNSTREAM CR43642 INTERGENIC
2L	4457591	2L_4457591_SNP [dm3] 2L_4457591_SNP [dm6]	C	A	2.071e^-4	0.948	UPSTREAM Gs1l DOWNSTREAM snoRNA:Me18S-C1831 INTRON RpL27A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	6093128	2R_6093128_SNP [dm3] 2R_10205623_SNP [dm6]	G	T	2.103e^-4	0.948	UTR_3_PRIME Hr46 & 1 other
2L	7813237	2L_7813237_SNP [dm3] 2L_7813237_SNP [dm6]	A	T	2.114e^-4	0.948	INTRON LanB1	TF binding site BDTNP1_TFBS_twi
2L	4560064	2L_4560064_SNP [dm3] 2L_4560064_SNP [dm6]	T	G	2.114e^-4	0.948	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10821755	2R_10821755_SNP [dm3] 2R_14934250_SNP [dm6]	T	C	2.118e^-4	0.948	UPSTREAM CG10253 DOWNSTREAM CG12853 INTRON CG10253	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	11252040	3L_11252040_SNP [dm3] 3L_11258940_SNP [dm6]	G	T	2.124e^-4	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9703380	2L_9703380_SNP [dm3] 2L_9703380_SNP [dm6]	A	G	2.129e^-4	0.948	SYNONYMOUS_CODING CG31710 INTRON pelo
2L	5335292	2L_5335292_SNP [dm3] 2L_5335292_SNP [dm6]	A	G	2.136e^-4	0.948	INTRON fusl
2L	4559620	2L_4559620_SNP [dm3] 2L_4559620_SNP [dm6]	C	T	2.137e^-4	0.948	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	21261537	3R_21261537_SNP [dm3] 3R_25435815_SNP [dm6]	T	C	2.139e^-4	0.948	INTRON Fur1
2R	18434924	2R_18434924_SNP [dm3] 2R_22547419_SNP [dm6]	G	A	2.144e^-4	0.948	UPSTREAM px INTRON px
3L	10271355	3L_10271355_SNP [dm3] 3L_10278255_SNP [dm6]	T	A	2.144e^-4	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	5955752	2L_5955752_SNP [dm3] 2L_5955752_SNP [dm6]	A	T	2.146e^-4	0.948	DOWNSTREAM CG9044 & 1 other INTRON CG13999
3L	11251962	3L_11251962_SNP [dm3] 3L_11258862_SNP [dm6]	T	G	2.150e^-4	0.948	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	2734888	X_2734888_SNP [dm3] X_2840855_SNP [dm6]	C	A	2.152e^-4	0.948	INTRON kirre
2R	19505408	2R_19505408_SNP [dm3] 2R_23617885_SNP [dm6]	T	C	2.153e^-4	0.948	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	7434947	2L_7434947_SNP [dm3] 2L_7434947_SNP [dm6]	G	T	2.154e^-4	0.948	INTERGENIC
3L	9896448	3L_9896448_SNP [dm3] 3L_9903348_SNP [dm6]	G	T	2.159e^-4	0.948	DOWNSTREAM nudE INTERGENIC
X	7476180	X_7476180_SNP [dm3] X_7582147_SNP [dm6]	T	C	2.161e^-4	0.948	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15600120	3L_15600120_SNP [dm3] 3L_15607020_SNP [dm6]	C	T	2.161e^-4	0.948	SYNONYMOUS_CODING RhoGAP71E UTR_3_PRIME RhoGAP71E
3R	20380847	3R_20380847_SNP [dm3] 3R_24555125_SNP [dm6]	G	T	2.170e^-4	0.948	NON_SYNONYMOUS_CODING Esyt2 UPSTREAM tRNA:D:96A & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	5128655	2L_5128655_SNP [dm3] 2L_5128655_SNP [dm6]	A	T	2.203e^-4	0.948	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15108737	3R_15108737_SNP [dm3] 3R_19283015_SNP [dm6]	T	A	2.205e^-4	0.948	INTERGENIC
3L	2091980	3L_2091980_SNP [dm3] 3L_2091980_SNP [dm6]	A	G	2.207e^-4	0.948	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17040663	3R_17040663_SNP [dm3] 3R_21214941_SNP [dm6]	C	T	2.209e^-4	0.948	UPSTREAM CG5862 DOWNSTREAM SNF4Agamma INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	18040466	3R_18040466_SNP [dm3] 3R_22214744_SNP [dm6]	G	C	2.209e^-4	0.948	NON_SYNONYMOUS_CODING Gld2 INTRON SKIP	TF binding site mE1_TFBS_inv
3R	11603336	3R_11603336_SNP [dm3] 3R_15777614_SNP [dm6]	T	C	2.212e^-4	0.948	UTR_3_PRIME CG4525
X	15479517	X_15479517_DEL [dm3] X_15585484_DEL [dm6]	AATA	A	2.217e^-4	0.948	UTR_3_PRIME CG9220 DOWNSTREAM CG8097
X	10888442	X_10888442_SNP [dm3] X_10994409_SNP [dm6]	T	A	2.222e^-4	0.948	INTRON CG42339
2L	13448423	2L_13448423_SNP [dm3] 2L_13448423_SNP [dm6]	G	A	2.227e^-4	0.948	SYNONYMOUS_CODING Hsp60D INTRON CG42784
3L	12392251	3L_12392251_SNP [dm3] 3L_12399151_SNP [dm6]	A	G	2.234e^-4	0.948	SYNONYMOUS_CODING CG32104 DOWNSTREAM Smyd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	6847977	2R_6847977_SNP [dm3] 2R_10960472_SNP [dm6]	C	T	2.234e^-4	0.948	INTERGENIC
3R	6011163	3R_6011163_SNP [dm3] 3R_10185441_SNP [dm6]	C	T	2.235e^-4	0.948	INTRON CG12814
3R	12673696	3R_12673696_SNP [dm3] 3R_16847974_SNP [dm6]	G	T	2.250e^-4	0.948	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2R	10820164	2R_10820164_SNP [dm3] 2R_14932659_SNP [dm6]	T	A	2.252e^-4	0.948	UPSTREAM CG12853 INTRON CG10253
X	20328205	X_20328205_SNP [dm3] X_20457178_SNP [dm6]	T	C	2.259e^-4	0.948	INTRON CG32506
3R	6010054	3R_6010054_SNP [dm3] 3R_10184332_SNP [dm6]	C	T	2.269e^-4	0.948	INTRON CG12814	TF binding site mE1_TFBS_cad
3R	25240210	3R_25240210_DEL [dm3] 3R_29414488_DEL [dm6]	TTAGTTG	T	2.278e^-4	0.948	INTRON Ptp99A
2R	15835327	2R_15835327_SNP [dm3] 2R_19947822_SNP [dm6]	A	C	2.278e^-4	0.948	NON_SYNONYMOUS_CODING CG30447
2R	10191885	2R_10191885_SNP [dm3] 2R_14304380_SNP [dm6]	T	C	2.281e^-4	0.948	INTERGENIC
2L	4303669	2L_4303669_SNP [dm3] 2L_4303669_SNP [dm6]	C	T	2.286e^-4	0.948	INTRON tutl
3R	6232419	3R_6232419_SNP [dm3] 3R_10406697_SNP [dm6]	A	G	2.286e^-4	0.948	INTRON CG6325
2L	7045431	2L_7045431_SNP [dm3] 2L_7045431_SNP [dm6]	T	C	2.292e^-4	0.948	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21258029	3R_21258029_SNP [dm3] 3R_25432307_SNP [dm6]	G	T	2.292e^-4	0.948	INTRON Fur1
X	3149559	X_3149559_SNP [dm3] X_3255526_SNP [dm6]	A	G	2.293e^-4	0.948	UPSTREAM dnc INTRON dnc
2L	7533094	2L_7533094_SNP [dm3] 2L_7533094_SNP [dm6]	C	T	2.296e^-4	0.948	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	21261594	3R_21261594_SNP [dm3] 3R_25435872_SNP [dm6]	A	T	2.296e^-4	0.948	INTRON Fur1
3L	13609693	3L_13609693_SNP [dm3] 3L_13616593_SNP [dm6]	T	C	2.298e^-4	0.948	INTRON bru-3
2L	2763047	2L_2763047_SNP [dm3] 2L_2763047_SNP [dm6]	C	T	2.299e^-4	0.948	SYNONYMOUS_CODING Trn-SR DOWNSTREAM CG3077
3R	23448193	3R_23448193_SNP [dm3] 3R_27622471_SNP [dm6]	G	A	2.313e^-4	0.951	DOWNSTREAM CG5612 INTRON Tusp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12342345	2R_12342345_SNP [dm3] 2R_16454840_SNP [dm6]	C	A	2.331e^-4	0.957	INTERGENIC
3L	7628124	3L_7628124_SNP [dm3] 3L_7635024_SNP [dm6]	T	G	2.340e^-4	0.958	INTRON CG33275	TF binding site mE1_TFBS_HSA
3R	8490834	3R_8490834_SNP [dm3] 3R_12665112_SNP [dm6]	T	A	2.351e^-4	0.959	INTRON CG14395
2R	14119907	2R_14119907_SNP [dm3] 2R_18232402_SNP [dm6]	T	C	2.353e^-4	0.959	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	7532947	2L_7532947_SNP [dm3] 2L_7532947_SNP [dm6]	G	A	2.358e^-4	0.959	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11788836	3L_11788836_SNP [dm3] 3L_11795736_SNP [dm6]	G	C	2.383e^-4	0.965	DOWNSTREAM CG10907 INTRON Klp68D	TF binding site mE1_TFBS_sens
3R	20015572	3R_20015572_SNP [dm3] 3R_24189850_SNP [dm6]	A	G	2.388e^-4	0.965	SYNONYMOUS_CODING jnj UPSTREAM CG5515	TF binding site mE1_TFBS_sens
X	15479762	X_15479762_SNP [dm3] X_15585729_SNP [dm6]	T	A	2.388e^-4	0.965	UTR_3_PRIME CG9220 DOWNSTREAM CG8097
3L	20955207	3L_20955207_SNP [dm3] 3L_20962107_SNP [dm6]	A	T	2.410e^-4	0.97	NON_SYNONYMOUS_CODING CG10587 UPSTREAM CG11037 DOWNSTREAM CG12983	TF binding site BDTNP1_TFBS_prd mE1_TFBS_sens
2L	20012014	2L_20012014_SNP [dm3] 2L_20012014_SNP [dm6]	G	T	2.414e^-4	0.97	INTRON CG43861
3L	4413574	3L_4413574_SNP [dm3] 3L_4413574_SNP [dm6]	A	C	2.416e^-4	0.97	UPSTREAM DOR INTRON DOR	TF binding site BDTNP1_TFBS_hb
2R	14119948	2R_14119948_SNP [dm3] 2R_18232443_SNP [dm6]	G	A	2.436e^-4	0.972	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	8116815	2L_8116815_SNP [dm3] 2L_8116815_SNP [dm6]	T	C	2.436e^-4	0.972	DOWNSTREAM mon2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	8116818	2L_8116818_SNP [dm3] 2L_8116818_SNP [dm6]	C	T	2.436e^-4	0.972	DOWNSTREAM mon2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	17138987	2R_17138987_SNP [dm3] 2R_21251482_SNP [dm6]	A	T	2.444e^-4	0.972	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	11603975	3R_11603975_SNP [dm3] 3R_15778253_SNP [dm6]	A	G	2.449e^-4	0.972	DOWNSTREAM CG4525 INTERGENIC
2R	19115867	2R_19115867_SNP [dm3] 2R_23228344_SNP [dm6]	T	A	2.453e^-4	0.972	INTERGENIC
2L	11057643	2L_11057643_SNP [dm3] 2L_11057643_SNP [dm6]	G	A	2.464e^-4	0.972	INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8122051	2R_8122051_SNP [dm3] 2R_12234546_SNP [dm6]	C	T	2.466e^-4	0.972	EXON CR44313	TF binding site mE1_TFBS_kn
2R	5107065	2R_5107065_SNP [dm3] 2R_9219560_SNP [dm6]	T	A	2.468e^-4	0.972	INTERGENIC
X	8746453	X_8746453_SNP [dm3] X_8852420_SNP [dm6]	C	A	2.472e^-4	0.972	INTRON CG12075
X	18214609	X_18214609_SNP [dm3] X_18320576_SNP [dm6]	T	G	2.488e^-4	0.974	INTRON CG6023
3R	7472612	3R_7472612_SNP [dm3] 3R_11646890_SNP [dm6]	A	G	2.492e^-4	0.974	UTR_5_PRIME Csk INTRON Csk
3L	14156181	3L_14156181_SNP [dm3] 3L_14163081_SNP [dm6]	A	T	2.494e^-4	0.974	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6230898	3R_6230898_SNP [dm3] 3R_10405176_SNP [dm6]	T	C	2.510e^-4	0.976	SYNONYMOUS_CODING CG6325	TF binding site mE1_TFBS_cad
X	2356615	X_2356615_INS [dm3] X_2462582_INS [dm6]	A	ATA	2.520e^-4	0.976	INTRON boi
2R	15754600	2R_15754600_SNP [dm3] 2R_19867095_SNP [dm6]	A	G	2.543e^-4	0.976	UPSTREAM Obp56i INTRON Obp56i
3L	7874650	3L_7874650_SNP [dm3] 3L_7881550_SNP [dm6]	C	T	2.545e^-4	0.976	INTRON CG32365
2L	14399650	2L_14399650_SNP [dm3] 2L_14399650_SNP [dm6]	A	G	2.548e^-4	0.976	INTRON elB
3L	9484303	3L_9484303_SNP [dm3] 3L_9491203_SNP [dm6]	T	G	2.548e^-4	0.976	INTRON CG32037	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	6818588	2L_6818588_SNP [dm3] 2L_6818588_SNP [dm6]	C	T	2.562e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_cad
2R	7940129	2R_7940129_SNP [dm3] 2R_12052624_SNP [dm6]	T	A	2.604e^-4	0.976	UPSTREAM CG30039 & 1 other INTERGENIC
2R	18279757	2R_18279757_SNP [dm3] 2R_22392252_SNP [dm6]	A	C	2.605e^-4	0.976	INTRON CG13506	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2538241	3L_2538241_SNP [dm3] 3L_2538241_SNP [dm6]	G	A	2.608e^-4	0.976	INTRON Spn
3R	3866804	3R_3866804_SNP [dm3] 3R_8041082_SNP [dm6]	G	T	2.610e^-4	0.976	UPSTREAM CG43060 INTERGENIC
2R	834222	2R_834222_SNP [dm3] 2R_4946717_SNP [dm6]	G	T	2.622e^-4	0.976	INTRON Ir41a	transposable element FlyBase
2L	7490999	2L_7490999_SNP [dm3] 2L_7490999_SNP [dm6]	T	C	2.622e^-4	0.976	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	11413423	2R_11413423_SNP [dm3] 2R_15525918_SNP [dm6]	C	T	2.628e^-4	0.976	SYNONYMOUS_CODING Khc-73	TF binding site mE1_TFBS_cad
X	7476138	X_7476138_SNP [dm3] X_7582105_SNP [dm6]	T	A	2.646e^-4	0.976	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14778759	2R_14778759_SNP [dm3] 2R_18891254_SNP [dm6]	G	A	2.653e^-4	0.976	INTRON sano
2L	9123487	2L_9123487_SNP [dm3] 2L_9123487_SNP [dm6]	T	A	2.658e^-4	0.976	UPSTREAM CR44615 INTERGENIC
3R	20017660	3R_20017660_SNP [dm3] 3R_24191938_SNP [dm6]	C	T	2.658e^-4	0.976	NON_SYNONYMOUS_CODING jnj
2L	5335311	2L_5335311_SNP [dm3] 2L_5335311_SNP [dm6]	T	C	2.662e^-4	0.976	INTRON fusl
2L	7524718	2L_7524718_SNP [dm3] 2L_7524718_SNP [dm6]	G	T	2.670e^-4	0.976	INTRON RapGAP1
3L	16507264	3L_16507264_SNP [dm3] 3L_16514164_SNP [dm6]	T	G	2.673e^-4	0.976	INTRON CG43373
2R	10809178	2R_10809178_DEL [dm3] 2R_14921673_DEL [dm6]	GG	G	2.673e^-4	0.976	INTRON CG10249
3R	12677211	3R_12677211_SNP [dm3] 3R_16851489_SNP [dm6]	T	G	2.676e^-4	0.976	INTRON iab-8 & 1 other EXON iab-4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	20006295	2R_20006295_SNP [dm3] 2R_24118772_SNP [dm6]	T	C	2.682e^-4	0.976	INTRON CG3257	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	13650436	2R_13650436_SNP [dm3] 2R_17762931_SNP [dm6]	G	C	2.683e^-4	0.976	SYNONYMOUS_CODING CG5009
3L	13251989	3L_13251989_SNP [dm3] 3L_13258889_SNP [dm6]	A	G	2.686e^-4	0.976	INTRON caps
3L	2060361	3L_2060361_SNP [dm3] 3L_2060361_SNP [dm6]	G	A	2.696e^-4	0.976	NON_SYNONYMOUS_CODING sls INTRON sls
2R	6568986	2R_6568986_SNP [dm3] 2R_10681481_SNP [dm6]	C	A	2.699e^-4	0.976	INTRON stan	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	7462155	3R_7462155_SNP [dm3] 3R_11636433_SNP [dm6]	G	A	2.700e^-4	0.976	SYNONYMOUS_CODING Csk UPSTREAM CR44137	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2119224	3L_2119224_DEL [dm3] 3L_2119224_DEL [dm6]	AGTAATTAA	A	2.713e^-4	0.976	INTRON zormin
X	10309625	X_10309625_SNP [dm3] X_10415592_SNP [dm6]	T	A	2.714e^-4	0.976	INTRON CG32683
3L	18823109	3L_18823109_DEL [dm3] 3L_18830009_DEL [dm6]	TAAT	A	2.722e^-4	0.976	INTRON Indy	TF binding site mE1_TFBS_cad
3R	10998050	3R_10998050_SNP [dm3] 3R_15172328_SNP [dm6]	T	C	2.723e^-4	0.976	DOWNSTREAM Mf INTRON Mf & 1 other
2L	4498614	2L_4498614_SNP [dm3] 2L_4498614_SNP [dm6]	C	T	2.739e^-4	0.976	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	4596743	X_4596743_SNP [dm3] X_4702710_SNP [dm6]	A	G	2.748e^-4	0.976	NON_SYNONYMOUS_CODING l_1_G0334 UTR_5_PRIME l_1_G0334 DOWNSTREAM ctp INTRON l_1_G0334	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	15137459	3R_15137459_SNP [dm3] 3R_19311737_SNP [dm6]	C	A	2.753e^-4	0.976	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	12677268	3R_12677268_SNP [dm3] 3R_16851546_SNP [dm6]	A	T	2.753e^-4	0.976	INTRON iab-8 & 1 other EXON iab-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	9123489	2L_9123489_SNP [dm3] 2L_9123489_SNP [dm6]	A	T	2.762e^-4	0.976	UPSTREAM CR44615 INTERGENIC
2L	5501570	2L_5501570_SNP [dm3] 2L_5501570_SNP [dm6]	G	T	2.769e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_cad
2L	6109083	2L_6109083_SNP [dm3] 2L_6109083_SNP [dm6]	G	A	2.773e^-4	0.976	UPSTREAM stai INTRON stai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	12611304	2L_12611304_SNP [dm3] 2L_12611304_SNP [dm6]	T	G	2.774e^-4	0.976	NON_SYNONYMOUS_CODING Ref2 INTRON nub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	1678331	3L_1678331_SNP [dm3] 3L_1678331_SNP [dm6]	T	C	2.777e^-4	0.976	INTRON CG7991	TF binding site mE1_TFBS_chinmo
3R	20017585	3R_20017585_SNP [dm3] 3R_24191863_SNP [dm6]	G	A	2.780e^-4	0.976	NON_SYNONYMOUS_CODING jnj
2L	7434957	2L_7434957_SNP [dm3] 2L_7434957_SNP [dm6]	G	A	2.787e^-4	0.976	INTERGENIC
3L	7163867	3L_7163867_INS [dm3] 3L_7170767_INS [dm6]	T	TATT	2.789e^-4	0.976	DOWNSTREAM Dscam2 INTRON Dscam2
3R	11601983	3R_11601983_SNP [dm3] 3R_15776261_SNP [dm6]	C	T	2.799e^-4	0.976	SYNONYMOUS_CODING CG4525 UPSTREAM CR45207
2L	4455745	2L_4455745_SNP [dm3] 2L_4455745_SNP [dm6]	C	G	2.809e^-4	0.976	DOWNSTREAM CG15434 INTRON Gs1l	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2373193	2L_2373193_SNP [dm3] 2L_2373193_SNP [dm6]	G	A	2.814e^-4	0.976	SYNONYMOUS_CODING CG3609	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4553952	2L_4553952_SNP [dm3] 2L_4553952_SNP [dm6]	G	T	2.818e^-4	0.976	SYNONYMOUS_CODING dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12236607	2L_12236607_SNP [dm3] 2L_12236607_SNP [dm6]	G	T	2.827e^-4	0.976	INTRON aret
3L	20584908	3L_20584908_SNP [dm3] 3L_20591808_SNP [dm6]	A	G	2.833e^-4	0.976	INTERGENIC
2L	5527866	2L_5527866_SNP [dm3] 2L_5527866_SNP [dm6]	C	T	2.834e^-4	0.976	UPSTREAM CR44793 & 1 other DOWNSTREAM CG31648 INTRON Cap-D3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sens
X	14693064	X_14693064_SNP [dm3] X_14799031_SNP [dm6]	A	G	2.837e^-4	0.976	SYNONYMOUS_CODING rut	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11596338	3R_11596338_SNP [dm3] 3R_15770616_SNP [dm6]	T	A	2.870e^-4	0.976	INTERGENIC
X	9497232	X_9497232_SNP [dm3] X_9603199_SNP [dm6]	G	A	2.877e^-4	0.976	SYNONYMOUS_CODING Gga DOWNSTREAM Lst8	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7076559	3L_7076559_SNP [dm3] 3L_7083459_SNP [dm6]	G	T	2.884e^-4	0.976	INTERGENIC
X	13923075	X_13923075_SNP [dm3] X_14029042_SNP [dm6]	G	T	2.892e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12865084	3R_12865084_SNP [dm3] 3R_17039362_SNP [dm6]	C	T	2.897e^-4	0.976	NON_SYNONYMOUS_CODING CG18213	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2R	8552303	2R_8552303_SNP [dm3] 2R_12664798_SNP [dm6]	G	A	2.899e^-4	0.976	INTRON nemy
X	7476149	X_7476149_SNP [dm3] X_7582116_SNP [dm6]	C	T	2.902e^-4	0.976	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14031264	3R_14031264_SNP [dm3] 3R_18205542_SNP [dm6]	G	T	2.906e^-4	0.976	INTRON CG7985
X	3012118	X_3012118_INS [dm3] X_3118085_INS [dm6]	G	GGCCG	2.914e^-4	0.976	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11598201	3R_11598201_SNP [dm3] 3R_15772479_SNP [dm6]	A	T	2.916e^-4	0.976	INTERGENIC
2R	11617742	2R_11617742_SNP [dm3] 2R_15730237_SNP [dm6]	T	C	2.917e^-4	0.976	INTRON CG30089
2L	8327996	2L_8327996_SNP [dm3] 2L_8327996_SNP [dm6]	C	A	2.918e^-4	0.976	INTRON CG14275
2R	6568993	2R_6568993_SNP [dm3] 2R_10681488_SNP [dm6]	T	G	2.921e^-4	0.976	INTRON stan	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	6448646	2L_6448646_DEL [dm3] 2L_6448646_DEL [dm6]	ACATTACA	A	2.921e^-4	0.976	UTR_3_PRIME retm UPSTREAM CG9527 DOWNSTREAM retm	TF binding site mE1_TFBS_kn
2L	10820563	2L_10820563_SNP [dm3] 2L_10820563_SNP [dm6]	A	G	2.926e^-4	0.976	UPSTREAM CG17134 DOWNSTREAM CG6508 INTRON Nos
2L	11265892	2L_11265892_SNP [dm3] 2L_11265892_SNP [dm6]	T	A	2.928e^-4	0.976	NON_SYNONYMOUS_CODING cmet	TF binding site mE1_TFBS_sens
2R	16495095	2R_16495095_SNP [dm3] 2R_20607590_SNP [dm6]	T	G	2.929e^-4	0.976	DOWNSTREAM bl INTRON Hil	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13172577	3L_13172577_SNP [dm3] 3L_13179477_SNP [dm6]	T	C	2.932e^-4	0.976	INTERGENIC
3L	2645997	3L_2645997_SNP [dm3] 3L_2645997_SNP [dm6]	G	T	2.935e^-4	0.976	NON_SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5527853	2L_5527853_SNP [dm3] 2L_5527853_SNP [dm6]	G	T	2.938e^-4	0.976	UTR_3_PRIME CG31648 UPSTREAM CR44793 & 1 other INTRON Cap-D3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sens
2R	835902	2R_835902_SNP [dm3] 2R_4948397_SNP [dm6]	C	G	2.940e^-4	0.976	INTRON Ir41a
2L	7531759	2L_7531759_SNP [dm3] 2L_7531759_SNP [dm6]	G	A	2.949e^-4	0.976	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5794533	3L_5794533_SNP [dm3] 3L_5801433_SNP [dm6]	A	G	2.965e^-4	0.976	INTRON S6k	TF binding site mE1_TFBS_cad
2R	18434626	2R_18434626_SNP [dm3] 2R_22547121_SNP [dm6]	G	A	2.972e^-4	0.976	UPSTREAM px INTRON px
2L	7429169	2L_7429169_SNP [dm3] 2L_7429169_SNP [dm6]	G	A	2.974e^-4	0.976	SPLICE_SITE_REGION CG5261 SYNONYMOUS_CODING CG5261
2L	4534022	2L_4534022_SNP [dm3] 2L_4534022_SNP [dm6]	C	A	2.983e^-4	0.976	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_sens
2R	5815815	2R_5815815_SNP [dm3] 2R_9928310_SNP [dm6]	T	G	2.985e^-4	0.976	INTRON Mef2
3R	11609108	3R_11609108_SNP [dm3] 3R_15783386_SNP [dm6]	C	T	2.988e^-4	0.976	INTERGENIC
3R	11610513	3R_11610513_SNP [dm3] 3R_15784791_SNP [dm6]	A	T	2.988e^-4	0.976	INTERGENIC
3R	11610520	3R_11610520_SNP [dm3] 3R_15784798_SNP [dm6]	C	T	2.988e^-4	0.976	INTERGENIC
3R	11610525	3R_11610525_SNP [dm3] 3R_15784803_SNP [dm6]	A	T	2.988e^-4	0.976	INTERGENIC
2L	9280176	2L_9280176_SNP [dm3] 2L_9280176_SNP [dm6]	T	G	2.995e^-4	0.976	INTRON Ggamma30A
X	8959411	X_8959411_SNP [dm3] X_9065378_SNP [dm6]	G	T	2.997e^-4	0.976	INTRON CG15365	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	6229779	3R_6229779_SNP [dm3] 3R_10404057_SNP [dm6]	A	G	3.003e^-4	0.976	NON_SYNONYMOUS_CODING CG6325	TF binding site mE1_TFBS_cad
3L	7188221	3L_7188221_SNP [dm3] 3L_7195121_SNP [dm6]	A	G	3.007e^-4	0.976	INTERGENIC
X	13692501	X_13692501_SNP [dm3] X_13798468_SNP [dm6]	C	T	3.011e^-4	0.976	UPSTREAM CG10996 INTRON inaE
2R	14070496	2R_14070496_SNP [dm3] 2R_18182991_SNP [dm6]	G	T	3.014e^-4	0.976	SYNONYMOUS_CODING CG5721 DOWNSTREAM nopo	TF binding site mE1_TFBS_chinmo
3R	24907285	3R_24907285_DEL [dm3] 3R_29081563_DEL [dm6]	ACATTG	A	3.016e^-4	0.976	INTRON CG11873
2L	3009340	2L_3009340_DEL [dm3] 2L_3009340_DEL [dm6]	CCAATC	C	3.017e^-4	0.976	INTRON CG17265	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	4344613	X_4344613_SNP [dm3] X_4450580_SNP [dm6]	G	T	3.017e^-4	0.976	INTRON CR32773 & 1 other
3R	11601114	3R_11601114_SNP [dm3] 3R_15775392_SNP [dm6]	G	A	3.019e^-4	0.976	UPSTREAM CR45206 & 1 other INTRON CG4525	TF binding site mE1_TFBS_inv
X	19112930	X_19112930_SNP [dm3] X_19218897_SNP [dm6]	G	A	3.024e^-4	0.976	INTERGENIC
2R	1183751	2R_1183751_SNP [dm3] 2R_5296246_SNP [dm6]	A	T	3.032e^-4	0.976	DOWNSTREAM d4 INTERGENIC
2L	3722140	2L_3722140_SNP [dm3] 2L_3722140_SNP [dm6]	T	C	3.043e^-4	0.976	INTRON Shaw
3R	15108659	3R_15108659_SNP [dm3] 3R_19282937_SNP [dm6]	G	A	3.044e^-4	0.976	INTERGENIC
2L	20857352	2L_20857352_SNP [dm3] 2L_20857352_SNP [dm6]	T	C	3.045e^-4	0.976	SYNONYMOUS_CODING CG14400 DOWNSTREAM twit	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1031249	3L_1031249_SNP [dm3] 3L_1031249_SNP [dm6]	G	T	3.050e^-4	0.976	INTRON trio	TF binding site mE1_TFBS_sens
3L	4099616	3L_4099616_SNP [dm3] 3L_4099616_SNP [dm6]	C	A	3.059e^-4	0.976	INTRON CG14995	TF binding site mE1_TFBS_inv
2L	4004731	2L_4004731_SNP [dm3] 2L_4004731_SNP [dm6]	A	C	3.070e^-4	0.976	UPSTREAM CG15422 DOWNSTREAM CG34176 INTERGENIC
2L	10086396	2L_10086396_SNP [dm3] 2L_10086396_SNP [dm6]	A	T	3.075e^-4	0.976	INTRON CG44153
X	8361598	X_8361598_SNP [dm3] X_8467565_SNP [dm6]	C	A	3.078e^-4	0.976	UTR_3_PRIME CG12116 INTRON CG33223
2L	5955932	2L_5955932_SNP [dm3] 2L_5955932_SNP [dm6]	A	G	3.089e^-4	0.976	SYNONYMOUS_CODING CG13999 DOWNSTREAM CG9044 & 1 other
2L	4495579	2L_4495579_SNP [dm3] 2L_4495579_SNP [dm6]	G	A	3.091e^-4	0.976	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4561981	2L_4561981_SNP [dm3] 2L_4561981_SNP [dm6]	T	A	3.096e^-4	0.976	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	16798008	2L_16798008_SNP [dm3] 2L_16798008_SNP [dm6]	A	G	3.099e^-4	0.976	NON_SYNONYMOUS_CODING Ugt36Bb
2L	11057266	2L_11057266_DEL [dm3] 2L_11057266_DEL [dm6]	ATTTCTTA	A	3.102e^-4	0.976	UPSTREAM Samuel INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	5363092	3L_5363092_SNP [dm3] 3L_5369992_SNP [dm6]	A	T	3.107e^-4	0.976	EXON CR44515
3L	7629487	3L_7629487_SNP [dm3] 3L_7636387_SNP [dm6]	T	G	3.110e^-4	0.976	NON_SYNONYMOUS_CODING CG33275	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23582666	3R_23582666_SNP [dm3] 3R_27756944_SNP [dm6]	C	T	3.113e^-4	0.976	INTERGENIC
2R	20135290	2R_20135290_SNP [dm3] 2R_24247767_SNP [dm6]	T	A	3.114e^-4	0.976	INTRON nord
3R	26851580	3R_26851580_SNP [dm3] 3R_31025858_SNP [dm6]	G	A	3.118e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	20016930	3R_20016930_SNP [dm3] 3R_24191208_SNP [dm6]	T	A	3.120e^-4	0.976	SYNONYMOUS_CODING jnj
2L	4563546	2L_4563546_SNP [dm3] 2L_4563546_SNP [dm6]	T	A	3.123e^-4	0.976	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1183750	2R_1183750_SNP [dm3] 2R_5296245_SNP [dm6]	A	T	3.124e^-4	0.976	DOWNSTREAM d4 INTERGENIC
X	19926869	X_19926869_INS [dm3] X_20032836_INS [dm6]	T	TGTGCCTT	3.138e^-4	0.976	INTRON Dop2R
3L	12597491	3L_12597491_SNP [dm3] 3L_12604391_SNP [dm6]	T	G	3.154e^-4	0.976	INTERGENIC
2L	19907956	2L_19907956_SNP [dm3] 2L_19907956_SNP [dm6]	C	A	3.160e^-4	0.976	INTRON sick
3L	19352444	3L_19352444_SNP [dm3] 3L_19359344_SNP [dm6]	A	G	3.162e^-4	0.976	INTRON CG32206
2L	4552343	2L_4552343_SNP [dm3] 2L_4552343_SNP [dm6]	A	G	3.163e^-4	0.976	SPLICE_SITE_REGION dp INTRON dp
2L	4554763	2L_4554763_SNP [dm3] 2L_4554763_SNP [dm6]	G	A	3.163e^-4	0.976	INTRON dp	TF binding site mE1_TFBS_cad
2L	16855578	2L_16855578_SNP [dm3] 2L_16855578_SNP [dm6]	A	T	3.169e^-4	0.976	INTRON CG31809	transposable element FlyBase
2L	8388358	2L_8388358_SNP [dm3] 2L_8388358_SNP [dm6]	A	G	3.173e^-4	0.976	UTR_3_PRIME CG13384 DOWNSTREAM CG42819	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17220815	3L_17220815_SNP [dm3] 3L_17227715_SNP [dm6]	C	A	3.183e^-4	0.976	INTRON Rbp6
3L	2087234	3L_2087234_SNP [dm3] 3L_2087234_SNP [dm6]	G	A	3.184e^-4	0.976	UPSTREAM CR42860 INTRON sls	TF binding site BDTNP1_TFBS_prd
2R	3307134	2R_3307134_SNP [dm3] 2R_7419629_SNP [dm6]	G	T	3.186e^-4	0.976	START_GAINED so UTR_5_PRIME so	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16855278	2L_16855278_SNP [dm3] 2L_16855278_SNP [dm6]	A	C	3.187e^-4	0.976	INTRON CG31809
X	10310701	X_10310701_SNP [dm3] X_10416668_SNP [dm6]	G	C	3.187e^-4	0.976	UPSTREAM RabX2 INTRON CG32683
2L	3061074	2L_3061074_SNP [dm3] 2L_3061074_SNP [dm6]	C	T	3.188e^-4	0.976	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14473194	2L_14473194_SNP [dm3] 2L_14473194_SNP [dm6]	T	A	3.188e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	4552298	2L_4552298_SNP [dm3] 2L_4552298_SNP [dm6]	A	T	3.191e^-4	0.976	SYNONYMOUS_CODING dp
3L	296460	3L_296460_SNP [dm3] 3L_296460_SNP [dm6]	G	A	3.203e^-4	0.977	INTRON RhoGEF3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	296462	3L_296462_SNP [dm3] 3L_296462_SNP [dm6]	C	G	3.203e^-4	0.977	INTRON RhoGEF3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	18434828	2R_18434828_SNP [dm3] 2R_22547323_SNP [dm6]	G	A	3.214e^-4	0.977	UPSTREAM px INTRON px
2L	5528236	2L_5528236_SNP [dm3] 2L_5528236_SNP [dm6]	T	G	3.214e^-4	0.977	START_GAINED CG31915 UTR_5_PRIME CG31915 DOWNSTREAM CG31648 INTRON Cap-D3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5955941	2L_5955941_SNP [dm3] 2L_5955941_SNP [dm6]	G	T	3.222e^-4	0.978	SYNONYMOUS_CODING CG13999 DOWNSTREAM CG9044 & 1 other
2L	4561936	2L_4561936_SNP [dm3] 2L_4561936_SNP [dm6]	G	A	3.236e^-4	0.98	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	15120116	2R_15120116_SNP [dm3] 2R_19232611_SNP [dm6]	C	A	3.241e^-4	0.98	INTRON cora	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11600676	3R_11600676_SNP [dm3] 3R_15774954_SNP [dm6]	A	C	3.245e^-4	0.98	UPSTREAM CR45206 DOWNSTREAM CR45207 INTRON CG4525 EXON CR45207	TF binding site mE1_TFBS_inv
3L	11420198	3L_11420198_SNP [dm3] 3L_11427098_SNP [dm6]	C	T	3.250e^-4	0.98	DOWNSTREAM CG7560 INTERGENIC
2L	2372938	2L_2372938_SNP [dm3] 2L_2372938_SNP [dm6]	A	C	3.265e^-4	0.982	SYNONYMOUS_CODING CG3609	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	2734927	X_2734927_INS [dm3] X_2840894_INS [dm6]	A	AT	3.270e^-4	0.982	INTRON kirre
2L	11034165	2L_11034165_SNP [dm3] 2L_11034165_SNP [dm6]	A	C	3.271e^-4	0.982	UPSTREAM CG18666 INTRON Samuel
3R	11600637	3R_11600637_SNP [dm3] 3R_15774915_SNP [dm6]	T	A	3.292e^-4	0.986	UPSTREAM CR45206 DOWNSTREAM CR45207 INTRON CG4525 EXON CR45207	TF binding site mE1_TFBS_inv
3R	11606835	3R_11606835_SNP [dm3] 3R_15781113_SNP [dm6]	A	G	3.298e^-4	0.986	DOWNSTREAM CG5614 INTERGENIC
2L	10959982	2L_10959982_SNP [dm3] 2L_10959982_SNP [dm6]	C	T	3.321e^-4	0.986	INTRON dpr2
2L	17542657	2L_17542657_SNP [dm3] 2L_17542657_SNP [dm6]	C	T	3.324e^-4	0.986	DOWNSTREAM CR43304 INTERGENIC
2R	839119	2R_839119_INS [dm3] 2R_4951614_INS [dm6]	T	TTTCA	3.329e^-4	0.986	INTRON Ir41a	transposable element FlyBase
2R	3345737	2R_3345737_SNP [dm3] 2R_7458232_SNP [dm6]	A	C	3.335e^-4	0.986	INTRON Inos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	19664036	X_19664036_SNP [dm3] X_19770003_SNP [dm6]	G	A	3.336e^-4	0.986	INTRON vfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17578118	2R_17578118_SNP [dm3] 2R_21690613_SNP [dm6]	C	A	3.338e^-4	0.986	UPSTREAM CG42496 & 1 other DOWNSTREAM CG10307 INTRON Tim10 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	16523148	3R_16523148_SNP [dm3] 3R_20697426_SNP [dm6]	T	C	3.339e^-4	0.986	INTRON Oamb
3R	12677978	3R_12677978_SNP [dm3] 3R_16852256_SNP [dm6]	A	C	3.341e^-4	0.986	INTRON iab-8 & 1 other EXON iab-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9751350	3L_9751350_SNP [dm3] 3L_9758250_SNP [dm6]	G	C	3.356e^-4	0.986	INTRON CG42268
2L	4672401	2L_4672401_SNP [dm3] 2L_4672401_SNP [dm6]	G	T	3.362e^-4	0.986	INTERGENIC
X	10306497	X_10306497_SNP [dm3] X_10412464_SNP [dm6]	A	G	3.374e^-4	0.986	UTR_3_PRIME CG32683
2L	4558944	2L_4558944_SNP [dm3] 2L_4558944_SNP [dm6]	C	T	3.387e^-4	0.986	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20430833	3R_20430833_SNP [dm3] 3R_24605111_SNP [dm6]	G	C	3.399e^-4	0.986	INTRON mld
2L	7723443	2L_7723443_SNP [dm3] 2L_7723443_SNP [dm6]	G	T	3.399e^-4	0.986	UTR_3_PRIME CG13795 UPSTREAM CG13794
X	11237150	X_11237150_INS [dm3] X_11343117_INS [dm6]	T	TT	3.406e^-4	0.986	INTRON CG34348
2L	3537755	2L_3537755_SNP [dm3] 2L_3537755_SNP [dm6]	T	C	3.409e^-4	0.986	UPSTREAM CR44308 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	25335740	3R_25335740_SNP [dm3] 3R_29510018_SNP [dm6]	T	C	3.411e^-4	0.986	INTERGENIC
2L	4867595	2L_4867595_SNP [dm3] 2L_4867595_SNP [dm6]	G	C	3.413e^-4	0.986	INTRON pog
X	10310348	X_10310348_SNP [dm3] X_10416315_SNP [dm6]	T	C	3.421e^-4	0.986	INTRON CG32683
3R	1658329	3R_1658329_SNP [dm3] 3R_5832607_SNP [dm6]	C	A	3.423e^-4	0.986	DOWNSTREAM glob3 INTRON CG1208	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3699580	2L_3699580_SNP [dm3] 2L_3699580_SNP [dm6]	C	A	3.436e^-4	0.986	UPSTREAM CG10031 & 1 other INTRON CG42464
3R	21156681	3R_21156681_SNP [dm3] 3R_25330959_SNP [dm6]	T	C	3.436e^-4	0.986	DOWNSTREAM CG10669 INTRON CHKov2
2R	6568981	2R_6568981_INS [dm3] 2R_10681476_INS [dm6]	T	TA	3.448e^-4	0.986	INTRON stan	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	6568990	2R_6568990_INS [dm3] 2R_10681485_INS [dm6]	T	TTATTAGATC	3.448e^-4	0.986	INTRON stan	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	15108638	3R_15108638_DEL [dm3] 3R_19282916_DEL [dm6]	TGGAATT	T	3.451e^-4	0.986	INTERGENIC
X	10309490	X_10309490_SNP [dm3] X_10415457_SNP [dm6]	T	G	3.455e^-4	0.986	INTRON CG32683
2R	15941423	2R_15941423_SNP [dm3] 2R_20053918_SNP [dm6]	G	A	3.466e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1
2R	11041602	2R_11041602_SNP [dm3] 2R_15154097_SNP [dm6]	C	T	3.470e^-4	0.986	INTERGENIC
3L	16691072	3L_16691072_DEL [dm3] 3L_16697972_DEL [dm6]	AA	A	3.471e^-4	0.986	DOWNSTREAM CR45179 INTRON Lasp & 1 other
3L	3524472	3L_3524472_SNP [dm3] 3L_3524472_SNP [dm6]	A	T	3.472e^-4	0.986	UPSTREAM CR45043 INTRON Eip63E
2L	3314079	2L_3314079_SNP [dm3] 2L_3314079_SNP [dm6]	C	T	3.480e^-4	0.986	SYNONYMOUS_CODING CG3277
2R	17064435	2R_17064435_SNP [dm3] 2R_21176930_SNP [dm6]	A	T	3.482e^-4	0.986	DOWNSTREAM CG4286 INTRON Pu
3L	3974721	3L_3974721_DEL [dm3] 3L_3974721_DEL [dm6]	GA	G	3.484e^-4	0.986	DOWNSTREAM CG43915 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2R	21081273	2R_21081273_INS [dm3] 2R_25193750_INS [dm6]	A	ATA	3.484e^-4	0.986	INTRON CG9380
X	9701879	X_9701879_DEL [dm3] X_9807846_DEL [dm6]	CGT	C	3.506e^-4	0.986	INTRON CG32698
2L	5927213	2L_5927213_SNP [dm3] 2L_5927213_SNP [dm6]	A	G	3.511e^-4	0.986	INTRON dsf
3L	2538953	3L_2538953_SNP [dm3] 3L_2538953_SNP [dm6]	C	G	3.518e^-4	0.986	INTRON Spn
2L	4557130	2L_4557130_SNP [dm3] 2L_4557130_SNP [dm6]	T	C	3.524e^-4	0.986	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	7542142	2L_7542142_SNP [dm3] 2L_7542142_SNP [dm6]	G	T	3.526e^-4	0.986	INTRON RapGAP1	TF binding site mE1_TFBS_HSA
2R	3209376	2R_3209376_INS [dm3] 2R_7321871_INS [dm6]	T	TAAGT	3.542e^-4	0.986	INTRON Dscam1
2R	10423252	2R_10423252_SNP [dm3] 2R_14535747_SNP [dm6]	A	G	3.551e^-4	0.986	INTRON ttv
3L	2538453	3L_2538453_SNP [dm3] 3L_2538453_SNP [dm6]	A	C	3.572e^-4	0.986	INTRON Spn
3L	13254546	3L_13254546_SNP [dm3] 3L_13261446_SNP [dm6]	G	T	3.573e^-4	0.986	INTRON caps
2L	8333408	2L_8333408_SNP [dm3] 2L_8333408_SNP [dm6]	T	C	3.573e^-4	0.986	DOWNSTREAM CG14275 INTERGENIC
3L	2648479	3L_2648479_SNP [dm3] 3L_2648479_SNP [dm6]	C	A	3.576e^-4	0.986	UTR_5_PRIME CG1246
3L	18310333	3L_18310333_SNP [dm3] 3L_18317233_SNP [dm6]	G	T	3.579e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	17899190	X_17899190_SNP [dm3] X_18005157_SNP [dm6]	T	A	3.586e^-4	0.986	DOWNSTREAM CG12672 INTRON Sh
3R	6230832	3R_6230832_SNP [dm3] 3R_10405110_SNP [dm6]	T	C	3.592e^-4	0.986	INTRON CG6325	TF binding site mE1_TFBS_cad
3L	3842053	3L_3842053_SNP [dm3] 3L_3842053_SNP [dm6]	G	A	3.593e^-4	0.986	UTR_3_PRIME enc DOWNSTREAM enc
X	9497112	X_9497112_SNP [dm3] X_9603079_SNP [dm6]	G	A	3.595e^-4	0.986	SYNONYMOUS_CODING Gga	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23191823	3R_23191823_SNP [dm3] 3R_27366101_SNP [dm6]	G	C	3.601e^-4	0.986	DOWNSTREAM CR43476 INTRON CG42534
2L	13227367	2L_13227367_SNP [dm3] 2L_13227367_SNP [dm6]	C	T	3.604e^-4	0.986	UPSTREAM CG16813 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	9123446	2L_9123446_SNP [dm3] 2L_9123446_SNP [dm6]	C	G	3.615e^-4	0.986	UPSTREAM CR44615 INTERGENIC
2L	14473201	2L_14473201_SNP [dm3] 2L_14473201_SNP [dm6]	A	T	3.616e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	14396843	2L_14396843_SNP [dm3] 2L_14396843_SNP [dm6]	T	C	3.626e^-4	0.986	INTRON elB
3R	20016660	3R_20016660_SNP [dm3] 3R_24190938_SNP [dm6]	A	T	3.638e^-4	0.986	SYNONYMOUS_CODING jnj
X	17899205	X_17899205_SNP [dm3] X_18005172_SNP [dm6]	C	G	3.638e^-4	0.986	DOWNSTREAM CG12672 INTRON Sh
X	20839883	X_20839883_SNP [dm3] X_20968856_SNP [dm6]	T	A	3.642e^-4	0.986	INTERGENIC
2L	7338464	2L_7338464_SNP [dm3] 2L_7338464_SNP [dm6]	G	A	3.649e^-4	0.986	INTRON Wnt6
X	17285172	X_17285172_SNP [dm3] X_17391139_SNP [dm6]	T	C	3.653e^-4	0.986	INTERGENIC
X	5162649	X_5162649_DEL [dm3] X_5268616_DEL [dm6]	AA	A	3.687e^-4	0.986	INTERGENIC
3R	20380978	3R_20380978_SNP [dm3] 3R_24555256_SNP [dm6]	A	G	3.698e^-4	0.986	UPSTREAM tRNA:D:96A & 1 other INTRON Esyt2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	11594644	3R_11594644_SNP [dm3] 3R_15768922_SNP [dm6]	C	A	3.700e^-4	0.986	INTERGENIC
2L	16644164	2L_16644164_SNP [dm3] 2L_16644164_SNP [dm6]	C	A	3.700e^-4	0.986	INTRON CG42389	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3L	14156443	3L_14156443_SNP [dm3] 3L_14163343_SNP [dm6]	T	G	3.701e^-4	0.986	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	2764281	2L_2764281_SNP [dm3] 2L_2764281_SNP [dm6]	G	A	3.724e^-4	0.986	UTR_3_PRIME CG3077 DOWNSTREAM Trn-SR
X	6191117	X_6191117_SNP [dm3] X_6297084_SNP [dm6]	A	C	3.726e^-4	0.986	SYNONYMOUS_CODING CG3815	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18143767	X_18143767_SNP [dm3] X_18249734_SNP [dm6]	A	T	3.727e^-4	0.986	INTERGENIC
3R	10146674	3R_10146674_SNP [dm3] 3R_14320952_SNP [dm6]	G	T	3.729e^-4	0.986	UTR_3_PRIME Afti DOWNSTREAM Afti & 1 other
X	5332561	X_5332561_SNP [dm3] X_5438528_SNP [dm6]	T	A	3.736e^-4	0.986	INTERGENIC
3L	10280145	3L_10280145_SNP [dm3] 3L_10287045_SNP [dm6]	G	T	3.741e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7884832	2L_7884832_SNP [dm3] 2L_7884832_SNP [dm6]	A	G	3.741e^-4	0.986	UPSTREAM CG34132 DOWNSTREAM SmE INTRON CG7102	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	21634485	3L_21634485_SNP [dm3] 3L_21641385_SNP [dm6]	A	G	3.742e^-4	0.986	DOWNSTREAM CG32445 INTRON Atox1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
2L	4502501	2L_4502501_SNP [dm3] 2L_4502501_SNP [dm6]	G	T	3.748e^-4	0.986	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11299550	2R_11299550_SNP [dm3] 2R_15412045_SNP [dm6]	G	T	3.756e^-4	0.986	INTRON CG43729
X	7470208	X_7470208_SNP [dm3] X_7576175_SNP [dm6]	G	A	3.756e^-4	0.986	SYNONYMOUS_CODING CG11369	regulatory region REDfly_CRMs
3L	7151877	3L_7151877_SNP [dm3] 3L_7158777_SNP [dm6]	A	G	3.762e^-4	0.986	SYNONYMOUS_CODING CG8620 UTR_3_PRIME CG8620 DOWNSTREAM Dscam2
2L	3009211	2L_3009211_SNP [dm3] 2L_3009211_SNP [dm6]	C	T	3.762e^-4	0.986	INTRON CG17265	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	3225067	3R_3225067_SNP [dm3] 3R_7399345_SNP [dm6]	A	C	3.767e^-4	0.986	INTERGENIC
3L	7612769	3L_7612769_SNP [dm3] 3L_7619669_SNP [dm6]	T	A	3.769e^-4	0.986	INTRON CG33275
2L	3071196	2L_3071196_SNP [dm3] 2L_3071196_SNP [dm6]	G	T	3.778e^-4	0.986	SYNONYMOUS_CODING toc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1554061	2L_1554061_SNP [dm3] 2L_1554061_SNP [dm6]	T	C	3.779e^-4	0.986	INTERGENIC
2L	4505329	2L_4505329_SNP [dm3] 2L_4505329_SNP [dm6]	C	G	3.781e^-4	0.986	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	9860704	X_9860704_SNP [dm3] X_9966671_SNP [dm6]	C	A	3.784e^-4	0.986	UTR_3_PRIME CG1889 & 1 other DOWNSTREAM CG43386
2R	10423264	2R_10423264_SNP [dm3] 2R_14535759_SNP [dm6]	C	A	3.787e^-4	0.986	INTRON ttv
3L	4136203	3L_4136203_SNP [dm3] 3L_4136203_SNP [dm6]	C	G	3.789e^-4	0.986	UPSTREAM RfC4 DOWNSTREAM Rop INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	2825990	3L_2825990_DEL [dm3] 3L_2825990_DEL [dm6]	CC	A	3.797e^-4	0.986	INTRON CG43444
X	7476502	X_7476502_SNP [dm3] X_7582469_SNP [dm6]	A	T	3.799e^-4	0.986	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	5332564	X_5332564_DEL [dm3] X_5438531_DEL [dm6]	ATCCATGGA	A	3.799e^-4	0.986	INTERGENIC
2L	17501234	2L_17501234_SNP [dm3] 2L_17501234_SNP [dm6]	T	C	3.803e^-4	0.986	UPSTREAM Dhc36C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	6472585	3R_6472585_SNP [dm3] 3R_10646863_SNP [dm6]	T	C	3.816e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
3R	23584307	3R_23584307_SNP [dm3] 3R_27758585_SNP [dm6]	G	A	3.817e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5332562	X_5332562_SNP [dm3] X_5438529_SNP [dm6]	G	T	3.820e^-4	0.986	INTERGENIC
2L	12206279	2L_12206279_SNP [dm3] 2L_12206279_SNP [dm6]	C	G	3.835e^-4	0.986	INTRON aret
3L	2990227	3L_2990227_SNP [dm3] 3L_2990227_SNP [dm6]	G	A	3.841e^-4	0.986	INTERGENIC
3R	10636247	3R_10636247_SNP [dm3] 3R_14810525_SNP [dm6]	G	A	3.843e^-4	0.986	INTRON btsz
3L	7152220	3L_7152220_SNP [dm3] 3L_7159120_SNP [dm6]	G	T	3.847e^-4	0.986	DOWNSTREAM Dscam2 & 1 other INTERGENIC
2L	6114113	2L_6114113_SNP [dm3] 2L_6114113_SNP [dm6]	C	A	3.857e^-4	0.986	INTRON stai
3R	26373786	3R_26373786_SNP [dm3] 3R_30548064_SNP [dm6]	A	G	3.862e^-4	0.986	INTRON tmod
2L	3084200	2L_3084200_SNP [dm3] 2L_3084200_SNP [dm6]	A	T	3.863e^-4	0.986	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
2R	13384603	2R_13384603_SNP [dm3] 2R_17497098_SNP [dm6]	T	C	3.867e^-4	0.986	INTERGENIC
2L	3736494	2L_3736494_SNP [dm3] 2L_3736494_SNP [dm6]	T	A	3.873e^-4	0.986	INTRON CG10019
2R	6790700	2R_6790700_SNP [dm3] 2R_10903195_SNP [dm6]	C	T	3.875e^-4	0.986	UPSTREAM CG12943 INTERGENIC
2L	5528333	2L_5528333_SNP [dm3] 2L_5528333_SNP [dm6]	G	A	3.882e^-4	0.986	SYNONYMOUS_CODING CG31915 DOWNSTREAM CG31648 INTRON Cap-D3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7319487	2L_7319487_SNP [dm3] 2L_7319487_SNP [dm6]	A	C	3.890e^-4	0.986	INTERGENIC
3R	11614462	3R_11614462_SNP [dm3] 3R_15788740_SNP [dm6]	A	G	3.894e^-4	0.986	NON_SYNONYMOUS_CODING CG9589 DOWNSTREAM CG9590 & 1 other	TF binding site mE1_TFBS_HSA
X	19356010	X_19356010_SNP [dm3] X_19461977_SNP [dm6]	C	T	3.896e^-4	0.986	INTRON kek5
2R	19224726	2R_19224726_DEL [dm3] 2R_23337203_DEL [dm6]	AG	A	3.906e^-4	0.986	INTERGENIC
2R	3306726	2R_3306726_SNP [dm3] 2R_7419221_SNP [dm6]	C	T	3.915e^-4	0.986	UPSTREAM so INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	14626277	2R_14626277_SNP [dm3] 2R_18738772_SNP [dm6]	C	G	3.916e^-4	0.986	NON_SYNONYMOUS_CODING CG33998 DOWNSTREAM CR30121 INTRON Hs3st-A
X	12136692	X_12136692_SNP [dm3] X_12242659_SNP [dm6]	C	T	3.919e^-4	0.986	INTRON Ten-a
3R	1665121	3R_1665121_SNP [dm3] 3R_5839399_SNP [dm6]	G	A	3.923e^-4	0.986	DOWNSTREAM CG1208 INTERGENIC
2R	17348041	2R_17348041_SNP [dm3] 2R_21460536_SNP [dm6]	A	G	3.927e^-4	0.986	INTRON Sdc
2L	9123463	2L_9123463_INS [dm3] 2L_9123463_INS [dm6]	A	AATTTTAAGGC...	3.930e^-4	0.986	UPSTREAM CR44615 INTERGENIC
3L	5248168	3L_5248168_SNP [dm3] 3L_5255068_SNP [dm6]	T	G	3.963e^-4	0.986	INTRON shep
2R	12528188	2R_12528188_SNP [dm3] 2R_16640683_SNP [dm6]	T	C	3.974e^-4	0.986	UPSTREAM Alk & 1 other INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8891550	2L_8891550_SNP [dm3] 2L_8891550_SNP [dm6]	C	T	3.975e^-4	0.986	NON_SYNONYMOUS_CODING CG42713
2L	20012073	2L_20012073_MNP [dm3] 2L_20012073_MNP [dm6]	CAC	GTG	3.982e^-4	0.986	INTRON CG43861
2R	18933132	2R_18933132_SNP [dm3] 2R_23045609_SNP [dm6]	A	G	3.986e^-4	0.986	UPSTREAM twi INTRON twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26851648	3R_26851648_DEL [dm3] 3R_31025926_DEL [dm6]	TCGGTTTTCCATTT...	T	3.986e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14536801	2L_14536801_DEL [dm3] 2L_14536801_DEL [dm6]	TT	T	3.988e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	14693019	X_14693019_SNP [dm3] X_14798986_SNP [dm6]	G	A	3.990e^-4	0.986	SYNONYMOUS_CODING rut	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24757605	3R_24757605_SNP [dm3] 3R_28931883_SNP [dm6]	C	T	3.997e^-4	0.986	INTRON CG14521
3R	11600159	3R_11600159_SNP [dm3] 3R_15774437_SNP [dm6]	G	A	4.003e^-4	0.986	UTR_5_PRIME CG4525 DOWNSTREAM CR45207 EXON CR45206
3R	11600192	3R_11600192_SNP [dm3] 3R_15774470_SNP [dm6]	G	A	4.003e^-4	0.986	UTR_5_PRIME CG4525 DOWNSTREAM CR45207 EXON CR45206
X	15519253	X_15519253_SNP [dm3] X_15625220_SNP [dm6]	T	G	4.013e^-4	0.986	INTRON sog	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1744843	2L_1744843_SNP [dm3] 2L_1744843_SNP [dm6]	A	C	4.035e^-4	0.986	INTRON CG17646
3R	11605035	3R_11605035_SNP [dm3] 3R_15779313_SNP [dm6]	A	T	4.049e^-4	0.986	UPSTREAM CG5614 INTERGENIC
2L	9298073	2L_9298073_SNP [dm3] 2L_9298073_SNP [dm6]	T	C	4.050e^-4	0.986	UTR_3_PRIME Ggamma30A
3R	24405660	3R_24405660_SNP [dm3] 3R_28579938_SNP [dm6]	A	G	4.061e^-4	0.986	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	4560505	2L_4560505_SNP [dm3] 2L_4560505_SNP [dm6]	A	G	4.062e^-4	0.986	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	7123129	2L_7123129_SNP [dm3] 2L_7123129_SNP [dm6]	A	T	4.066e^-4	0.986	INTRON Pvf3
3R	25782458	3R_25782458_SNP [dm3] 3R_29956736_SNP [dm6]	C	A	4.070e^-4	0.986	INTRON TkR99D
2R	5815814	2R_5815814_SNP [dm3] 2R_9928309_SNP [dm6]	A	G	4.079e^-4	0.986	INTRON Mef2
3R	7550976	3R_7550976_SNP [dm3] 3R_11725254_SNP [dm6]	G	C	4.088e^-4	0.986	INTRON CG12594	TF binding site mE1_TFBS_inv
2L	1744817	2L_1744817_SNP [dm3] 2L_1744817_SNP [dm6]	A	G	4.108e^-4	0.986	INTRON CG17646
X	2356677	X_2356677_SNP [dm3] X_2462644_SNP [dm6]	C	T	4.110e^-4	0.986	INTRON boi
3R	7544559	3R_7544559_SNP [dm3] 3R_11718837_SNP [dm6]	C	T	4.110e^-4	0.986	INTERGENIC
2R	6568985	2R_6568985_SNP [dm3] 2R_10681480_SNP [dm6]	A	T	4.117e^-4	0.986	INTRON stan	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	12917139	3R_12917139_SNP [dm3] 3R_17091417_SNP [dm6]	T	C	4.127e^-4	0.986	UTR_3_PRIME cal1 DOWNSTREAM cher
3L	5142055	3L_5142055_SNP [dm3] 3L_5148955_SNP [dm6]	C	G	4.130e^-4	0.986	SYNONYMOUS_CODING Aats-ala-m DOWNSTREAM Gen	TF binding site mE1_TFBS_chinmo
3R	21162806	3R_21162806_SNP [dm3] 3R_25337084_SNP [dm6]	T	C	4.134e^-4	0.986	SYNONYMOUS_CODING CG11902	TF binding site mE1_TFBS_sens
2L	4505288	2L_4505288_SNP [dm3] 2L_4505288_SNP [dm6]	T	C	4.140e^-4	0.986	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11603914	3R_11603914_SNP [dm3] 3R_15778192_SNP [dm6]	A	G	4.143e^-4	0.986	DOWNSTREAM CG4525 INTERGENIC
3R	17389075	3R_17389075_SNP [dm3] 3R_21563353_SNP [dm6]	A	C	4.144e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_inv
3R	11614359	3R_11614359_SNP [dm3] 3R_15788637_SNP [dm6]	C	T	4.148e^-4	0.986	SYNONYMOUS_CODING CG9589 DOWNSTREAM CG9590 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18994904	2L_18994904_SNP [dm3] 2L_18994904_SNP [dm6]	G	T	4.148e^-4	0.986	NON_SYNONYMOUS_CODING CG10650	TF binding site mE1_TFBS_cad
2L	3574131	2L_3574131_SNP [dm3] 2L_3574131_SNP [dm6]	T	A	4.153e^-4	0.986	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2R	10474135	2R_10474135_SNP [dm3] 2R_14586630_SNP [dm6]	A	T	4.155e^-4	0.986	UTR_3_PRIME ttv	TF binding site mE1_TFBS_zfh1
2R	14105072	2R_14105072_SNP [dm3] 2R_18217567_SNP [dm6]	C	T	4.159e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	5408975	X_5408975_SNP [dm3] X_5514942_SNP [dm6]	T	C	4.164e^-4	0.986	INTERGENIC
2R	15127733	2R_15127733_SNP [dm3] 2R_19240228_SNP [dm6]	T	C	4.165e^-4	0.986	SYNONYMOUS_CODING cora INTRON cora	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1045609	3L_1045609_SNP [dm3] 3L_1045609_SNP [dm6]	T	A	4.172e^-4	0.986	INTRON bab1
2L	7122606	2L_7122606_SNP [dm3] 2L_7122606_SNP [dm6]	A	G	4.209e^-4	0.986	INTRON Pvf3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2L	7301342	2L_7301342_SNP [dm3] 2L_7301342_SNP [dm6]	T	G	4.212e^-4	0.986	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10560160	3L_10560160_SNP [dm3] 3L_10567060_SNP [dm6]	C	A	4.216e^-4	0.986	INTRON A2bp1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	5332592	X_5332592_DEL [dm3] X_5438559_DEL [dm6]	CAC	G	4.216e^-4	0.986	INTERGENIC
3L	12314810	3L_12314810_DEL [dm3] 3L_12321710_DEL [dm6]	TTTAAGGGATCTACTTGCAG...	T	4.221e^-4	0.986	INTERGENIC
2L	10096702	2L_10096702_SNP [dm3] 2L_10096702_SNP [dm6]	C	G	4.231e^-4	0.986	INTRON CG44153 & 1 other
2L	10096703	2L_10096703_SNP [dm3] 2L_10096703_SNP [dm6]	C	A	4.231e^-4	0.986	INTRON CG44153 & 1 other
2L	3063669	2L_3063669_SNP [dm3] 2L_3063669_SNP [dm6]	T	C	4.232e^-4	0.986	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4004727	2L_4004727_SNP [dm3] 2L_4004727_SNP [dm6]	C	A	4.234e^-4	0.986	UPSTREAM CG15422 DOWNSTREAM CG34176 INTERGENIC
2L	11062974	2L_11062974_SNP [dm3] 2L_11062974_SNP [dm6]	T	C	4.247e^-4	0.986	INTRON Samuel
2L	10060504	2L_10060504_SNP [dm3] 2L_10060504_SNP [dm6]	G	A	4.254e^-4	0.986	UPSTREAM Spn31A DOWNSTREAM Pen INTERGENIC
2R	15120256	2R_15120256_INS [dm3] 2R_19232751_INS [dm6]	A	AA	4.256e^-4	0.986	INTRON cora	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1046114	3L_1046114_SNP [dm3] 3L_1046114_SNP [dm6]	C	G	4.257e^-4	0.986	INTRON bab1
2L	2066202	2L_2066202_SNP [dm3] 2L_2066202_SNP [dm6]	A	G	4.261e^-4	0.986	INTRON dpr3
2L	14552042	2L_14552042_SNP [dm3] 2L_14552042_SNP [dm6]	A	T	4.264e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	14552047	2L_14552047_SNP [dm3] 2L_14552047_SNP [dm6]	C	G	4.264e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	3083369	2L_3083369_SNP [dm3] 2L_3083369_SNP [dm6]	T	C	4.266e^-4	0.986	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	2666882	3L_2666882_SNP [dm3] 3L_2666882_SNP [dm6]	C	G	4.272e^-4	0.986	SYNONYMOUS_CODING Fife
X	10308228	X_10308228_SNP [dm3] X_10414195_SNP [dm6]	C	G	4.275e^-4	0.986	INTRON CG32683
X	7476828	X_7476828_SNP [dm3] X_7582795_SNP [dm6]	G	C	4.283e^-4	0.986	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_Med
3R	24768415	3R_24768415_SNP [dm3] 3R_28942693_SNP [dm6]	C	T	4.289e^-4	0.986	INTRON CG14521	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3063693	2L_3063693_SNP [dm3] 2L_3063693_SNP [dm6]	A	G	4.293e^-4	0.986	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8204251	3R_8204251_SNP [dm3] 3R_12378529_SNP [dm6]	C	T	4.294e^-4	0.986	START_GAINED GstD7 UTR_5_PRIME GstD7 DOWNSTREAM GstD6
X	2356789	X_2356789_SNP [dm3] X_2462756_SNP [dm6]	A	G	4.296e^-4	0.986	INTRON boi
2R	5818760	2R_5818760_SNP [dm3] 2R_9931255_SNP [dm6]	T	A	4.313e^-4	0.986	INTRON Mef2	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13615125	X_13615125_SNP [dm3] X_13721092_SNP [dm6]	C	T	4.315e^-4	0.986	SYNONYMOUS_CODING CG9941	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4503187	2L_4503187_SNP [dm3] 2L_4503187_SNP [dm6]	C	A	4.316e^-4	0.986	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4554445	2L_4554445_SNP [dm3] 2L_4554445_SNP [dm6]	T	A	4.337e^-4	0.986	SYNONYMOUS_CODING dp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5334966	2L_5334966_DEL [dm3] 2L_5334966_DEL [dm6]	CGCAGCTGATC...	C	4.338e^-4	0.986	INTRON fusl
2L	3059692	2L_3059692_SNP [dm3] 2L_3059692_SNP [dm6]	C	G	4.346e^-4	0.986	NON_SYNONYMOUS_CODING CG3523 UTR_5_PRIME CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_Trl
3L	5403566	3L_5403566_SNP [dm3] 3L_5410466_SNP [dm6]	G	A	4.362e^-4	0.986	INTERGENIC
2R	17368505	2R_17368505_SNP [dm3] 2R_21481000_SNP [dm6]	G	T	4.367e^-4	0.986	UPSTREAM Sara INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	9537404	3R_9537404_SNP [dm3] 3R_13711682_SNP [dm6]	T	C	4.372e^-4	0.986	SYNONYMOUS_CODING primo-2 UTR_5_PRIME primo-1 UPSTREAM primo-1 DOWNSTREAM CR34044	TF binding site mE1_TFBS_cad
3L	2546238	3L_2546238_SNP [dm3] 3L_2546238_SNP [dm6]	T	G	4.383e^-4	0.986	INTRON Spn
2R	9490554	2R_9490554_SNP [dm3] 2R_13603049_SNP [dm6]	C	T	4.390e^-4	0.986	INTERGENIC
X	10381386	X_10381386_SNP [dm3] X_10487353_SNP [dm6]	C	A	4.397e^-4	0.986	UPSTREAM CG32687 INTERGENIC
3R	11576004	3R_11576004_SNP [dm3] 3R_15750282_SNP [dm6]	T	G	4.418e^-4	0.986	INTERGENIC
X	9707092	X_9707092_SNP [dm3] X_9813059_SNP [dm6]	C	G	4.419e^-4	0.986	INTRON CG32698
X	10307996	X_10307996_SNP [dm3] X_10413963_SNP [dm6]	G	T	4.419e^-4	0.986	INTRON CG32683
2R	10303751	2R_10303751_SNP [dm3] 2R_14416246_SNP [dm6]	A	G	4.425e^-4	0.986	INTERGENIC
2L	11035300	2L_11035300_SNP [dm3] 2L_11035300_SNP [dm6]	G	A	4.436e^-4	0.986	UTR_3_PRIME CG18666 INTRON Samuel	TF binding site mE1_TFBS_cad
2L	2714871	2L_2714871_SNP [dm3] 2L_2714871_SNP [dm6]	C	T	4.444e^-4	0.986	INTRON CG31690
3R	9538175	3R_9538175_DEL [dm3] 3R_13712453_DEL [dm6]	TAA	GG	4.447e^-4	0.986	UPSTREAM primo-2 & 1 other DOWNSTREAM CR34044 INTERGENIC
2R	10006493	2R_10006493_SNP [dm3] 2R_14118988_SNP [dm6]	G	A	4.455e^-4	0.986	INTRON Prosap
X	18915625	X_18915625_SNP [dm3] X_19021592_SNP [dm6]	G	A	4.461e^-4	0.986	INTRON CG43759
X	5251697	X_5251697_SNP [dm3] X_5357664_SNP [dm6]	C	T	4.466e^-4	0.986	UPSTREAM SK INTRON SK
2L	3063330	2L_3063330_SNP [dm3] 2L_3063330_SNP [dm6]	G	C	4.472e^-4	0.986	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12865965	3R_12865965_DEL [dm3] 3R_17040243_DEL [dm6]	TT	T	4.511e^-4	0.986	UPSTREAM CG5220 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med
2R	12514575	2R_12514575_SNP [dm3] 2R_16627070_SNP [dm6]	T	C	4.512e^-4	0.986	UTR_3_PRIME Alk
3L	1077541	3L_1077541_SNP [dm3] 3L_1077541_SNP [dm6]	T	C	4.516e^-4	0.986	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17139323	2R_17139323_SNP [dm3] 2R_21251818_SNP [dm6]	A	C	4.520e^-4	0.986	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_Trl
3R	14031237	3R_14031237_SNP [dm3] 3R_18205515_SNP [dm6]	T	C	4.521e^-4	0.986	INTRON CG7985
2R	14584018	2R_14584018_SNP [dm3] 2R_18696513_SNP [dm6]	G	T	4.530e^-4	0.986	UPSTREAM CG15071 INTRON Sik3	TF binding site BDTNP1_TFBS_dl
X	7140024	X_7140024_SNP [dm3] X_7245991_SNP [dm6]	T	G	4.551e^-4	0.986	INTRON CR44357	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10475756	X_10475756_SNP [dm3] X_10581723_SNP [dm6]	T	C	4.551e^-4	0.986	INTRON spri
2L	8275096	2L_8275096_SNP [dm3] 2L_8275096_SNP [dm6]	T	A	4.558e^-4	0.986	UPSTREAM Btk29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11694723	2L_11694723_SNP [dm3] 2L_11694723_SNP [dm6]	A	T	4.564e^-4	0.986	UPSTREAM CG4988 INTERGENIC
2L	11035310	2L_11035310_SNP [dm3] 2L_11035310_SNP [dm6]	C	T	4.571e^-4	0.986	DOWNSTREAM CG18666 INTRON Samuel	TF binding site mE1_TFBS_cad
2R	6568996	2R_6568996_SNP [dm3] 2R_10681491_SNP [dm6]	T	A	4.574e^-4	0.986	INTRON stan	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	7531736	2L_7531736_SNP [dm3] 2L_7531736_SNP [dm6]	T	C	4.577e^-4	0.986	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9069684	2L_9069684_SNP [dm3] 2L_9069684_SNP [dm6]	A	G	4.588e^-4	0.986	INTRON CG31708
3L	5410508	3L_5410508_SNP [dm3] 3L_5417408_SNP [dm6]	A	G	4.592e^-4	0.986	INTERGENIC
2L	3067337	2L_3067337_SNP [dm3] 2L_3067337_SNP [dm6]	A	T	4.596e^-4	0.986	INTRON CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10006504	2R_10006504_SNP [dm3] 2R_14118999_SNP [dm6]	T	G	4.597e^-4	0.986	INTRON Prosap
2L	8180713	2L_8180713_SNP [dm3] 2L_8180713_SNP [dm6]	T	C	4.603e^-4	0.986	SYNONYMOUS_CODING Piezo INTRON Piezo	TF binding site mE1_TFBS_cad
2L	4560514	2L_4560514_SNP [dm3] 2L_4560514_SNP [dm6]	T	C	4.605e^-4	0.986	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	14420901	3L_14420901_SNP [dm3] 3L_14427801_SNP [dm6]	T	A	4.606e^-4	0.986	UPSTREAM bbg INTRON bbg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	379490	2L_379490_SNP [dm3] 2L_379490_SNP [dm6]	A	C	4.614e^-4	0.986	INTRON al	TF binding site mE1_TFBS_sens
2R	7147854	2R_7147854_SNP [dm3] 2R_11260349_SNP [dm6]	A	G	4.628e^-4	0.986	UPSTREAM Cpr47Ec DOWNSTREAM Cpr47Ed INTERGENIC
2L	15492265	2L_15492265_SNP [dm3] 2L_15492265_SNP [dm6]	T	A	4.630e^-4	0.986	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	7627931	2L_7627931_DEL [dm3] 2L_7627931_DEL [dm6]	GGC	G	4.642e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_sens
3R	21157605	3R_21157605_SNP [dm3] 3R_25331883_SNP [dm6]	A	G	4.648e^-4	0.986	SYNONYMOUS_CODING CG10669 UPSTREAM CHKov2	TF binding site mE1_TFBS_cad
2L	4560502	2L_4560502_SNP [dm3] 2L_4560502_SNP [dm6]	G	A	4.656e^-4	0.986	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	4588405	3L_4588405_SNP [dm3] 3L_4588405_SNP [dm6]	C	G	4.668e^-4	0.986	INTRON CG42540
2L	8195603	2L_8195603_SNP [dm3] 2L_8195603_SNP [dm6]	C	T	4.669e^-4	0.986	INTRON CG8475 EXON CR44116	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9244766	3L_9244766_SNP [dm3] 3L_9251666_SNP [dm6]	A	G	4.684e^-4	0.986	UPSTREAM GluRIB DOWNSTREAM CG4477 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3319312	3L_3319312_SNP [dm3] 3L_3319312_SNP [dm6]	A	T	4.685e^-4	0.986	UPSTREAM CG12016 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Stat92E mE1_TFBS_Ubx
2L	6127956	2L_6127956_SNP [dm3] 2L_6127956_SNP [dm6]	A	T	4.689e^-4	0.986	SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730 UPSTREAM WDR79	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11595569	3R_11595569_DEL [dm3] 3R_15769847_DEL [dm6]	TG	T	4.690e^-4	0.986	INTERGENIC
2L	7174665	2L_7174665_SNP [dm3] 2L_7174665_SNP [dm6]	A	C	4.690e^-4	0.986	EXON CR44610
2L	19895952	2L_19895952_SNP [dm3] 2L_19895952_SNP [dm6]	C	A	4.701e^-4	0.986	UPSTREAM sick INTRON sick	silencer mE1_HDAC_PRE
2R	7939206	2R_7939206_SNP [dm3] 2R_12051701_SNP [dm6]	G	C	4.711e^-4	0.986	UTR_5_PRIME CG30039
3L	3325320	3L_3325320_SNP [dm3] 3L_3325320_SNP [dm6]	G	T	4.713e^-4	0.986	SYNONYMOUS_CODING CG11526 UPSTREAM PHGPx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	5412727	X_5412727_SNP [dm3] X_5518694_SNP [dm6]	T	C	4.720e^-4	0.986	UTR_3_PRIME CG12730	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	2637337	X_2637337_SNP [dm3] X_2743304_SNP [dm6]	A	C	4.722e^-4	0.986	UPSTREAM Syx4 INTRON kirre & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10504083	3R_10504083_SNP [dm3] 3R_14678361_SNP [dm6]	G	A	4.727e^-4	0.986	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	1190339	2L_1190339_SNP [dm3] 2L_1190339_SNP [dm6]	C	T	4.731e^-4	0.986	INTRON CG5001
3R	21157341	3R_21157341_SNP [dm3] 3R_25331619_SNP [dm6]	C	T	4.732e^-4	0.986	UTR_3_PRIME CG10669 UPSTREAM CHKov2 DOWNSTREAM CG10669
3L	2925659	3L_2925659_SNP [dm3] 3L_2925659_SNP [dm6]	T	G	4.733e^-4	0.986	INTRON Shab
3R	15108614	3R_15108614_SNP [dm3] 3R_19282892_SNP [dm6]	C	G	4.755e^-4	0.986	INTERGENIC
3L	7633825	3L_7633825_SNP [dm3] 3L_7640725_SNP [dm6]	T	C	4.761e^-4	0.986	UPSTREAM CG33276 DOWNSTREAM snoRNA:Me18S-A1806 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	16644122	2L_16644122_SNP [dm3] 2L_16644122_SNP [dm6]	T	G	4.764e^-4	0.986	INTRON CG42389	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3L	3320204	3L_3320204_DEL [dm3] 3L_3320204_DEL [dm6]	ATTGTAGAGTCTAGGCATGT...	A	4.764e^-4	0.986	UPSTREAM PIG-C & 1 other INTRON CG12016 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
2R	6229966	2R_6229966_SNP [dm3] 2R_10342461_SNP [dm6]	A	C	4.768e^-4	0.986	INTRON CG42732
2L	7320189	2L_7320189_INS [dm3] 2L_7320189_INS [dm6]	T	TA	4.775e^-4	0.986	INTERGENIC
2R	14785903	2R_14785903_DEL [dm3] 2R_18898398_DEL [dm6]	GAG	G	4.777e^-4	0.986	INTRON sano
2R	3246098	2R_3246098_SNP [dm3] 2R_7358593_SNP [dm6]	G	A	4.780e^-4	0.986	INTRON Dscam1
2R	834212	2R_834212_SNP [dm3] 2R_4946707_SNP [dm6]	C	T	4.786e^-4	0.986	INTRON Ir41a	transposable element FlyBase
X	5332834	X_5332834_INS [dm3] X_5438801_INS [dm6]	A	AAGCTGTCCTCA...	4.792e^-4	0.986	INTERGENIC
3L	7995840	3L_7995840_SNP [dm3] 3L_8002740_SNP [dm6]	C	A	4.794e^-4	0.986	INTRON nmo
X	21850128	X_21850128_SNP [dm3] X_22448292_SNP [dm6]	G	T	4.795e^-4	0.986	DOWNSTREAM CG14621 INTRON CG14615
3R	26069516	3R_26069516_SNP [dm3] 3R_30243794_SNP [dm6]	T	C	4.798e^-4	0.986	UPSTREAM CG9737 DOWNSTREAM CG9733 INTERGENIC
3L	15286989	3L_15286989_SNP [dm3] 3L_15293889_SNP [dm6]	A	G	4.802e^-4	0.986	INTERGENIC
2R	6914493	2R_6914493_SNP [dm3] 2R_11026988_SNP [dm6]	G	C	4.808e^-4	0.986	INTRON luna
3R	25181705	3R_25181705_INS [dm3] 3R_29355983_INS [dm6]	T	TTC	4.815e^-4	0.986	DOWNSTREAM CR45547 INTERGENIC
3L	7514630	3L_7514630_SNP [dm3] 3L_7521530_SNP [dm6]	G	C	4.821e^-4	0.986	INTRON ltl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	8396611	2L_8396611_SNP [dm3] 2L_8396611_SNP [dm6]	T	C	4.824e^-4	0.986	UPSTREAM CG13385 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	7017087	2R_7017087_DEL [dm3] 2R_11129582_DEL [dm6]	TTG	T	4.826e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	20840815	X_20840815_DEL [dm3] X_20969788_DEL [dm6]	ATATA	A	4.828e^-4	0.986	INTERGENIC
X	13618024	X_13618024_SNP [dm3] X_13723991_SNP [dm6]	C	T	4.828e^-4	0.986	SYNONYMOUS_CODING mus101	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	3362714	2R_3362714_SNP [dm3] 2R_7475209_SNP [dm6]	T	C	4.833e^-4	0.986	UPSTREAM Aldh-III INTRON Aldh-III
2L	9280130	2L_9280130_SNP [dm3] 2L_9280130_SNP [dm6]	A	T	4.846e^-4	0.986	INTRON Ggamma30A
2R	10809177	2R_10809177_SNP [dm3] 2R_14921672_SNP [dm6]	G	A	4.850e^-4	0.986	INTRON CG10249
3R	9538183	3R_9538183_DEL [dm3] 3R_13712461_DEL [dm6]	AGT	A	4.856e^-4	0.986	UPSTREAM primo-2 & 1 other DOWNSTREAM CR34044 INTERGENIC
2R	17138949	2R_17138949_INS [dm3] 2R_21251444_INS [dm6]	A	AGTTTACCA	4.859e^-4	0.986	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	11057541	2L_11057541_SNP [dm3] 2L_11057541_SNP [dm6]	C	A	4.868e^-4	0.986	UPSTREAM Samuel INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	7682661	X_7682661_SNP [dm3] X_7788628_SNP [dm6]	G	T	4.888e^-4	0.986	INTERGENIC
3L	10273225	3L_10273225_SNP [dm3] 3L_10280125_SNP [dm6]	T	C	4.895e^-4	0.986	INTERGENIC
2R	8114814	2R_8114814_SNP [dm3] 2R_12227309_SNP [dm6]	C	A	4.913e^-4	0.986	UPSTREAM CG8854 INTRON CG8854
2L	3281424	2L_3281424_DEL [dm3] 2L_3281424_DEL [dm6]	GTTAGTTACGCTCGCAGGAG...	A	4.916e^-4	0.986	UPSTREAM CG3332 INTERGENIC
3L	14246128	3L_14246128_SNP [dm3] 3L_14253028_SNP [dm6]	T	C	4.920e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	8388422	2L_8388422_SNP [dm3] 2L_8388422_SNP [dm6]	G	A	4.925e^-4	0.986	UTR_3_PRIME CG13384 DOWNSTREAM CG42819	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7147884	2R_7147884_SNP [dm3] 2R_11260379_SNP [dm6]	G	A	4.927e^-4	0.986	UPSTREAM Cpr47Ec DOWNSTREAM Cpr47Ed INTERGENIC
2L	8257630	2L_8257630_SNP [dm3] 2L_8257630_SNP [dm6]	G	A	4.928e^-4	0.986	UPSTREAM CG8086 DOWNSTREAM Btk29A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2734880	X_2734880_SNP [dm3] X_2840847_SNP [dm6]	A	G	4.936e^-4	0.986	INTRON kirre
X	2778674	X_2778674_SNP [dm3] X_2884641_SNP [dm6]	G	A	4.939e^-4	0.986	UPSTREAM CG14418 DOWNSTREAM CG14419 INTRON kirre
2L	7535745	2L_7535745_SNP [dm3] 2L_7535745_SNP [dm6]	T	C	4.943e^-4	0.986	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_cad
2R	9124688	2R_9124688_SNP [dm3] 2R_13237183_SNP [dm6]	A	G	4.947e^-4	0.986	DOWNSTREAM CG4679 & 1 other INTERGENIC
2L	7535337	2L_7535337_DEL [dm3] 2L_7535337_DEL [dm6]	GA	T	4.953e^-4	0.986	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
2L	4528926	2L_4528926_SNP [dm3] 2L_4528926_SNP [dm6]	A	T	4.961e^-4	0.986	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	19885977	2L_19885977_SNP [dm3] 2L_19885977_SNP [dm6]	T	A	4.961e^-4	0.986	INTRON sick
3R	10636304	3R_10636304_DEL [dm3] 3R_14810582_DEL [dm6]	ATATTAGAAACCATTGC...	A	4.977e^-4	0.986	INTRON btsz
3R	22551460	3R_22551460_SNP [dm3] 3R_26725738_SNP [dm6]	T	C	4.977e^-4	0.986	UPSTREAM CG14244 & 1 other INTERGENIC	TF binding site mE1_TFBS_run mE1_TFBS_Ubx
2L	3007003	2L_3007003_SNP [dm3] 2L_3007003_SNP [dm6]	G	A	4.986e^-4	0.986	INTRON CG17265	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14060825	2R_14060825_SNP [dm3] 2R_18173320_SNP [dm6]	A	G	4.991e^-4	0.986	UPSTREAM Dgp-1 & 1 other EXON CR45315	TF binding site BDTNP1_TFBS_dl
2L	7355703	2L_7355703_SNP [dm3] 2L_7355703_SNP [dm6]	T	C	4.991e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
X	12953614	X_12953614_SNP [dm3] X_13059581_SNP [dm6]	C	T	5.003e^-4	0.986	INTRON rad
2R	6119734	2R_6119734_SNP [dm3] 2R_10232229_SNP [dm6]	G	T	5.003e^-4	0.986	SYNONYMOUS_CODING Hr46 UTR_3_PRIME CG12912 INTRON Hr46	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	6448319	2L_6448319_SNP [dm3] 2L_6448319_SNP [dm6]	C	T	5.004e^-4	0.986	UTR_5_PRIME CG9527 UPSTREAM CG9527 DOWNSTREAM retm	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	835063	2R_835063_MNP [dm3] 2R_4947558_MNP [dm6]	TAG	ATC	5.005e^-4	0.986	INTRON Ir41a
2L	7544743	2L_7544743_SNP [dm3] 2L_7544743_SNP [dm6]	A	T	5.014e^-4	0.986	UPSTREAM RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
X	7454677	X_7454677_SNP [dm3] X_7560644_SNP [dm6]	T	A	5.026e^-4	0.986	INTERGENIC
3R	12678253	3R_12678253_SNP [dm3] 3R_16852531_SNP [dm6]	T	C	5.028e^-4	0.986	INTRON iab-8 & 1 other EXON iab-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13190741	3L_13190741_SNP [dm3] 3L_13197641_SNP [dm6]	A	G	5.032e^-4	0.986	INTERGENIC	silencer mE1_HDAC_PRE
3R	12677179	3R_12677179_SNP [dm3] 3R_16851457_SNP [dm6]	T	A	5.034e^-4	0.986	INTRON iab-8 EXON iab-4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
2L	4523753	2L_4523753_SNP [dm3] 2L_4523753_SNP [dm6]	C	T	5.036e^-4	0.986	SPLICE_SITE_REGION dp SYNONYMOUS_CODING dp INTRON dp
3L	1461567	3L_1461567_SNP [dm3] 3L_1461567_SNP [dm6]	C	G	5.036e^-4	0.986	INTRON Ptp61F EXON CR44842	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4683826	2L_4683826_SNP [dm3] 2L_4683826_SNP [dm6]	A	C	5.036e^-4	0.986	NON_SYNONYMOUS_CODING Bsg25A INTRON CG11929	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5412729	X_5412729_SNP [dm3] X_5518696_SNP [dm6]	C	T	5.037e^-4	0.986	UTR_3_PRIME CG12730	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	6787782	2R_6787782_SNP [dm3] 2R_10900277_SNP [dm6]	T	A	5.040e^-4	0.986	INTERGENIC
2L	17800165	2L_17800165_SNP [dm3] 2L_17800165_SNP [dm6]	G	A	5.048e^-4	0.986	INTRON CadN2
2L	2925012	2L_2925012_SNP [dm3] 2L_2925012_SNP [dm6]	G	A	5.057e^-4	0.986	UTR_5_PRIME lilli INTRON lilli
3R	23315931	3R_23315931_INS [dm3] 3R_27490209_INS [dm6]	G	GATG	5.062e^-4	0.986	DOWNSTREAM Gr98a INTERGENIC
3L	5945033	3L_5945033_SNP [dm3] 3L_5951933_SNP [dm6]	G	A	5.074e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4505249	2L_4505249_SNP [dm3] 2L_4505249_SNP [dm6]	G	A	5.078e^-4	0.986	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	21168327	3R_21168327_SNP [dm3] 3R_25342605_SNP [dm6]	G	C	5.087e^-4	0.986	NON_SYNONYMOUS_CODING rha
2R	14148351	2R_14148351_SNP [dm3] 2R_18260846_SNP [dm6]	C	G	5.096e^-4	0.986	INTERGENIC
3L	3135266	3L_3135266_SNP [dm3] 3L_3135266_SNP [dm6]	T	G	5.103e^-4	0.986	INTRON CG11537
3R	6011144	3R_6011144_SNP [dm3] 3R_10185422_SNP [dm6]	G	A	5.116e^-4	0.986	INTRON CG12814
2R	12615324	2R_12615324_SNP [dm3] 2R_16727819_SNP [dm6]	A	G	5.118e^-4	0.986	INTRON CG30463
2L	4914119	2L_4914119_SNP [dm3] 2L_4914119_SNP [dm6]	G	C	5.118e^-4	0.986	INTRON hoe1
2L	16644089	2L_16644089_SNP [dm3] 2L_16644089_SNP [dm6]	A	T	5.120e^-4	0.986	INTRON CG42389	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3R	11607660	3R_11607660_SNP [dm3] 3R_15781938_SNP [dm6]	G	A	5.122e^-4	0.986	DOWNSTREAM CG5614 INTERGENIC
2L	4534060	2L_4534060_SNP [dm3] 2L_4534060_SNP [dm6]	G	C	5.126e^-4	0.986	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_sens
3L	20985518	3L_20985518_SNP [dm3] 3L_20992418_SNP [dm6]	C	T	5.132e^-4	0.986	UPSTREAM CG12984 DOWNSTREAM skd INTRON CG12984	TF binding site mE1_TFBS_HSA transposable element FlyBase
2L	8388970	2L_8388970_SNP [dm3] 2L_8388970_SNP [dm6]	G	A	5.132e^-4	0.986	SYNONYMOUS_CODING CG42819 UPSTREAM snRNA:U6atac:29B DOWNSTREAM CG13384 & 1 other
2L	7723438	2L_7723438_SNP [dm3] 2L_7723438_SNP [dm6]	T	C	5.134e^-4	0.986	UTR_3_PRIME CG13795 UPSTREAM CG13794
3L	9751468	3L_9751468_SNP [dm3] 3L_9758368_SNP [dm6]	T	G	5.134e^-4	0.986	INTRON CG42268
3L	1801593	3L_1801593_SNP [dm3] 3L_1801593_SNP [dm6]	A	T	5.136e^-4	0.986	SYNONYMOUS_CODING Patj DOWNSTREAM JTBR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14156649	3L_14156649_SNP [dm3] 3L_14163549_SNP [dm6]	C	A	5.148e^-4	0.986	INTERGENIC	regulatory region REDfly_CRMs
3L	1688933	3L_1688933_SNP [dm3] 3L_1688933_SNP [dm6]	T	C	5.151e^-4	0.986	UTR_5_PRIME CG7991 INTRON CG7991	TF binding site BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	14709431	2L_14709431_SNP [dm3] 2L_14709431_SNP [dm6]	T	C	5.151e^-4	0.986	INTERGENIC
3L	8331026	3L_8331026_SNP [dm3] 3L_8337926_SNP [dm6]	T	C	5.154e^-4	0.986	SYNONYMOUS_CODING Cpr66Cb
2R	18434461	2R_18434461_SNP [dm3] 2R_22546956_SNP [dm6]	A	G	5.154e^-4	0.986	UPSTREAM px INTRON px	TF binding site BDTNP1_TFBS_dl
3R	23315789	3R_23315789_SNP [dm3] 3R_27490067_SNP [dm6]	A	C	5.167e^-4	0.986	DOWNSTREAM Gr98a INTERGENIC
2R	17660806	2R_17660806_SNP [dm3] 2R_21773301_SNP [dm6]	C	T	5.188e^-4	0.986	UTR_5_PRIME CG4021
2R	4324697	2R_4324697_SNP [dm3] 2R_8437192_SNP [dm6]	G	A	5.197e^-4	0.986	UPSTREAM Lcp4 INTERGENIC
3L	16336259	3L_16336259_SNP [dm3] 3L_16343159_SNP [dm6]	G	C	5.207e^-4	0.986	SYNONYMOUS_CODING CG4998 INTRON CG4998	TF binding site mE1_TFBS_cad
3L	8142759	3L_8142759_SNP [dm3] 3L_8149659_SNP [dm6]	A	G	5.210e^-4	0.986	INTRON CG13676
X	20839922	X_20839922_SNP [dm3] X_20968895_SNP [dm6]	A	T	5.222e^-4	0.986	INTERGENIC
X	15519254	X_15519254_SNP [dm3] X_15625221_SNP [dm6]	A	T	5.229e^-4	0.986	INTRON sog	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17138866	2R_17138866_SNP [dm3] 2R_21251361_SNP [dm6]	C	T	5.230e^-4	0.986	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	4546392	2L_4546392_SNP [dm3] 2L_4546392_SNP [dm6]	G	A	5.238e^-4	0.986	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18458698	X_18458698_DEL [dm3] X_18564665_DEL [dm6]	AT	A	5.240e^-4	0.986	INTRON Bx	TF binding site mE1_TFBS_chinmo
2R	14170318	2R_14170318_SNP [dm3] 2R_18282813_SNP [dm6]	G	C	5.260e^-4	0.986	NON_SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13283596	2L_13283596_SNP [dm3] 2L_13283596_SNP [dm6]	C	G	5.269e^-4	0.986	UTR_3_PRIME CG44085 DOWNSTREAM Drep-4
3L	833287	3L_833287_SNP [dm3] 3L_833287_SNP [dm6]	C	T	5.287e^-4	0.986	UTR_5_PRIME CG13900 UPSTREAM snoRNA:Psi28S-3308 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
3L	2835271	3L_2835271_SNP [dm3] 3L_2835271_SNP [dm6]	T	A	5.288e^-4	0.986	INTRON CG43444
2L	1920577	2L_1920577_SNP [dm3] 2L_1920577_SNP [dm6]	C	T	5.289e^-4	0.986	INTRON CG7337
2R	18434872	2R_18434872_SNP [dm3] 2R_22547367_SNP [dm6]	A	T	5.294e^-4	0.986	UPSTREAM px INTRON px
2L	4453573	2L_4453573_SNP [dm3] 2L_4453573_SNP [dm6]	T	G	5.296e^-4	0.986	SYNONYMOUS_CODING CG15440 UPSTREAM CG15439	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	8195609	2L_8195609_SNP [dm3] 2L_8195609_SNP [dm6]	G	A	5.303e^-4	0.986	INTRON CG8475 EXON CR44116	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16880979	3R_16880979_SNP [dm3] 3R_21055257_SNP [dm6]	A	G	5.303e^-4	0.986	INTRON Mvl
2R	3412348	2R_3412348_SNP [dm3] 2R_7524843_SNP [dm6]	C	A	5.304e^-4	0.986	SYNONYMOUS_CODING Orc1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	13884409	3R_13884409_SNP [dm3] 3R_18058687_SNP [dm6]	A	T	5.320e^-4	0.986	INTERGENIC
2L	9502440	2L_9502440_INS [dm3] 2L_9502440_INS [dm6]	T	TCTGGGGTTTCAC...	5.322e^-4	0.986	INTRON CG33298
2R	14073081	2R_14073081_SNP [dm3] 2R_18185576_SNP [dm6]	T	C	5.335e^-4	0.986	INTRON CG33958	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1701480	2L_1701480_SNP [dm3] 2L_1701480_SNP [dm6]	G	T	5.335e^-4	0.986	UTR_3_PRIME chinmo
2R	12348049	2R_12348049_SNP [dm3] 2R_16460544_SNP [dm6]	A	T	5.340e^-4	0.986	INTERGENIC
2R	3345850	2R_3345850_SNP [dm3] 2R_7458345_SNP [dm6]	T	C	5.341e^-4	0.986	INTRON Inos	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	7149858	3L_7149858_SNP [dm3] 3L_7156758_SNP [dm6]	G	A	5.359e^-4	0.986	UTR_5_PRIME corn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	3475490	X_3475490_SNP [dm3] X_3581457_SNP [dm6]	G	A	5.361e^-4	0.986	INTRON AstA-R1
2R	18279758	2R_18279758_SNP [dm3] 2R_22392253_SNP [dm6]	C	T	5.363e^-4	0.986	INTRON CG13506	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11932694	3L_11932694_SNP [dm3] 3L_11939594_SNP [dm6]	C	A	5.365e^-4	0.986	UPSTREAM CG44837 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10574770	2L_10574770_SNP [dm3] 2L_10574770_SNP [dm6]	C	T	5.366e^-4	0.986	INTRON Trim9
2L	13448269	2L_13448269_SNP [dm3] 2L_13448269_SNP [dm6]	C	G	5.374e^-4	0.986	NON_SYNONYMOUS_CODING Hsp60D INTRON CG42784
3L	7624133	3L_7624133_SNP [dm3] 3L_7631033_SNP [dm6]	C	T	5.380e^-4	0.986	INTRON CG33275
2L	7072714	2L_7072714_SNP [dm3] 2L_7072714_SNP [dm6]	G	A	5.381e^-4	0.986	INTRON Pvf2
3L	8603604	3L_8603604_INS [dm3] 3L_8610504_INS [dm6]	A	AAA	5.393e^-4	0.986	INTRON CG6282
3R	6219289	3R_6219289_SNP [dm3] 3R_10393567_SNP [dm6]	A	G	5.397e^-4	0.986	INTRON cwo
2L	10131088	2L_10131088_SNP [dm3] 2L_10131088_SNP [dm6]	G	T	5.403e^-4	0.986	INTRON CG44153
2L	16644198	2L_16644198_SNP [dm3] 2L_16644198_SNP [dm6]	A	C	5.410e^-4	0.986	INTRON CG42389	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2L	7550611	2L_7550611_SNP [dm3] 2L_7550611_SNP [dm6]	A	T	5.410e^-4	0.986	INTRON RapGAP1
3L	4099976	3L_4099976_INS [dm3] 3L_4099976_INS [dm6]	C	CGTTC	5.414e^-4	0.986	INTRON CG14995	TF binding site mE1_TFBS_inv
X	5332359	X_5332359_SNP [dm3] X_5438326_SNP [dm6]	T	C	5.417e^-4	0.986	INTERGENIC
3L	8603610	3L_8603610_DEL [dm3] 3L_8610510_DEL [dm6]	TTT	G	5.418e^-4	0.986	INTRON CG6282
2L	3060258	2L_3060258_SNP [dm3] 2L_3060258_SNP [dm6]	C	T	5.421e^-4	0.986	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12384144	3L_12384144_SNP [dm3] 3L_12391044_SNP [dm6]	C	A	5.437e^-4	0.986	UTR_5_PRIME Ncc69 INTRON Ncc69	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17367584	2R_17367584_SNP [dm3] 2R_21480079_SNP [dm6]	T	G	5.438e^-4	0.986	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	4031966	2R_4031966_SNP [dm3] 2R_8144461_SNP [dm6]	T	G	5.458e^-4	0.986	INTRON Lpin

Missing results

By genomic position
Variant impact
Gene name

SegregVariants_3R phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results