DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.279e^-20)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	2.104e-06

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	12.6545	0.0018

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3339 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	15348697	2L_15348697_SNP [dm3] 2L_15348697_SNP [dm6]	C	T	1.253e^-8	0.018	INTERGENIC
2L	15348712	2L_15348712_INS [dm3] 2L_15348712_INS [dm6]	G	AA	1.923e^-8	0.018	INTERGENIC
2L	15348728	2L_15348728_SNP [dm3] 2L_15348728_SNP [dm6]	T	A	1.626e^-7	0.102	INTERGENIC
2L	15348643	2L_15348643_SNP [dm3] 2L_15348643_SNP [dm6]	G	T	3.002e^-7	0.141	INTERGENIC
3R	14626457	3R_14626457_SNP [dm3] 3R_18800735_SNP [dm6]	T	G	3.782e^-7	0.142	UTR_3_PRIME CG18208
2L	9469433	2L_9469433_SNP [dm3] 2L_9469433_SNP [dm6]	C	T	6.026e^-7	0.188	UPSTREAM CR43769 INTERGENIC
X	11237150	X_11237150_INS [dm3] X_11343117_INS [dm6]	T	TT	9.349e^-7	0.25	INTRON CG34348
3R	14626385	3R_14626385_SNP [dm3] 3R_18800663_SNP [dm6]	T	C	1.582e^-6	0.314	UTR_3_PRIME CG18208
2R	6976287	2R_6976287_INS [dm3] 2R_11088782_INS [dm6]	A	ATACACA	1.856e^-6	0.314	DOWNSTREAM CG43188 INTRON luna
2L	15337740	2L_15337740_SNP [dm3] 2L_15337740_SNP [dm6]	C	T	1.890e^-6	0.314	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8884999	2L_8884999_SNP [dm3] 2L_8884999_SNP [dm6]	C	T	1.966e^-6	0.314	INTERGENIC
3L	16334434	3L_16334434_SNP [dm3] 3L_16341334_SNP [dm6]	A	C	2.241e^-6	0.314	SYNONYMOUS_CODING CG4998	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16334602	3L_16334602_SNP [dm3] 3L_16341502_SNP [dm6]	T	C	2.303e^-6	0.314	SYNONYMOUS_CODING CG4998	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8892181	2L_8892181_SNP [dm3] 2L_8892181_SNP [dm6]	C	T	2.597e^-6	0.314	DOWNSTREAM CG42713 INTERGENIC
2L	8891353	2L_8891353_SNP [dm3] 2L_8891353_SNP [dm6]	T	G	2.655e^-6	0.314	UPSTREAM CG42713 INTERGENIC
3R	14626440	3R_14626440_SNP [dm3] 3R_18800718_SNP [dm6]	G	C	2.678e^-6	0.314	UTR_3_PRIME CG18208
2L	12226680	2L_12226680_SNP [dm3] 2L_12226680_SNP [dm6]	G	T	3.239e^-6	0.315	INTRON aret
2L	12226681	2L_12226681_SNP [dm3] 2L_12226681_SNP [dm6]	G	T	3.239e^-6	0.315	INTRON aret
3R	11594068	3R_11594068_SNP [dm3] 3R_15768346_SNP [dm6]	A	G	3.418e^-6	0.315	UPSTREAM CG5623 INTERGENIC
2L	12147885	2L_12147885_SNP [dm3] 2L_12147885_SNP [dm6]	C	T	3.446e^-6	0.315	INTRON CG31760
3R	13271279	3R_13271279_SNP [dm3] 3R_17445557_SNP [dm6]	A	T	3.523e^-6	0.315	INTRON CG5873
3L	9646361	3L_9646361_SNP [dm3] 3L_9653261_SNP [dm6]	G	T	3.897e^-6	0.332	INTRON fry & 1 other
2L	10426736	2L_10426736_INS [dm3] 2L_10426736_INS [dm6]	T	TGTT	4.236e^-6	0.345	UPSTREAM KdelR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	19297289	X_19297289_SNP [dm3] X_19403256_SNP [dm6]	G	A	4.597e^-6	0.354	INTRON kek5
X	10381386	X_10381386_SNP [dm3] X_10487353_SNP [dm6]	C	A	4.730e^-6	0.354	UPSTREAM CG32687 INTERGENIC
X	9497046	X_9497046_SNP [dm3] X_9603013_SNP [dm6]	T	A	5.071e^-6	0.354	SYNONYMOUS_CODING Gga	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16333699	3L_16333699_SNP [dm3] 3L_16340599_SNP [dm6]	G	A	5.123e^-6	0.354	SYNONYMOUS_CODING CG4998	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4313712	3L_4313712_SNP [dm3] 3L_4313712_SNP [dm6]	C	T	5.652e^-6	0.354	SYNONYMOUS_CODING Claspin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	8890918	2L_8890918_SNP [dm3] 2L_8890918_SNP [dm6]	G	A	6.330e^-6	0.354	UPSTREAM CG42713 INTERGENIC
X	9622010	X_9622010_SNP [dm3] X_9727977_SNP [dm6]	T	G	6.509e^-6	0.354	EXON CR43498	TF binding site BDTNP1_TFBS_dl
3R	1266966	3R_1266966_SNP [dm3] 3R_5441244_SNP [dm6]	C	T	6.732e^-6	0.354	INTRON CG14669
3L	3491918	3L_3491918_SNP [dm3] 3L_3491918_SNP [dm6]	G	A	6.750e^-6	0.354	INTRON CG42324
3R	6478421	3R_6478421_SNP [dm3] 3R_10652699_SNP [dm6]	G	A	6.911e^-6	0.354	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	6478427	3R_6478427_SNP [dm3] 3R_10652705_SNP [dm6]	T	C	6.911e^-6	0.354	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	5013334	3R_5013334_SNP [dm3] 3R_9187612_SNP [dm6]	G	A	7.133e^-6	0.354	INTRON pum	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12202139	2L_12202139_SNP [dm3] 2L_12202139_SNP [dm6]	C	T	7.467e^-6	0.354	INTRON aret
3L	16553942	3L_16553942_SNP [dm3] 3L_16560842_SNP [dm6]	C	A	7.557e^-6	0.354	INTERGENIC
3L	21472359	3L_21472359_DEL [dm3] 3L_21479259_DEL [dm6]	CC	C	7.658e^-6	0.354	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	7407114	X_7407114_SNP [dm3] X_7513081_SNP [dm6]	T	G	7.804e^-6	0.354	INTRON CG32719
2R	15086854	2R_15086854_SNP [dm3] 2R_19199349_SNP [dm6]	C	G	8.169e^-6	0.354	INTRON hppy
3R	6094576	3R_6094576_SNP [dm3] 3R_10268854_SNP [dm6]	G	T	8.473e^-6	0.354	INTRON CG43143	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	6478481	3R_6478481_SNP [dm3] 3R_10652759_SNP [dm6]	T	C	8.531e^-6	0.354	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	6478485	3R_6478485_INS [dm3] 3R_10652763_INS [dm6]	A	GC	8.531e^-6	0.354	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	18436654	2R_18436654_SNP [dm3] 2R_22549149_SNP [dm6]	C	A	8.737e^-6	0.354	UPSTREAM CG6018 INTRON px
3L	8798491	3L_8798491_SNP [dm3] 3L_8805391_SNP [dm6]	C	T	9.133e^-6	0.354	SYNONYMOUS_CODING CG34427 DOWNSTREAM CG13312	TF binding site mE1_TFBS_chinmo
3L	1679278	3L_1679278_SNP [dm3] 3L_1679278_SNP [dm6]	A	C	9.395e^-6	0.354	INTRON CG7991
3R	6469464	3R_6469464_SNP [dm3] 3R_10643742_SNP [dm6]	G	C	9.464e^-6	0.354	EXON CR44018	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	5162097	3R_5162097_SNP [dm3] 3R_9336375_SNP [dm6]	T	C	9.510e^-6	0.354	INTRON CG8121
X	9497043	X_9497043_SNP [dm3] X_9603010_SNP [dm6]	G	A	9.559e^-6	0.354	SYNONYMOUS_CODING Gga	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11594134	3R_11594134_SNP [dm3] 3R_15768412_SNP [dm6]	C	T	9.615e^-6	0.354	UPSTREAM CG5623 INTERGENIC
2L	12388049	2L_12388049_SNP [dm3] 2L_12388049_SNP [dm6]	T	C	9.863e^-6	0.354	INTRON bru-2
2R	12342361	2R_12342361_SNP [dm3] 2R_16454856_SNP [dm6]	C	G	9.955e^-6	0.354	INTERGENIC
2R	14626277	2R_14626277_SNP [dm3] 2R_18738772_SNP [dm6]	C	G	9.992e^-6	0.354	NON_SYNONYMOUS_CODING CG33998 DOWNSTREAM CR30121 INTRON Hs3st-A
3L	3842852	3L_3842852_SNP [dm3] 3L_3842852_SNP [dm6]	T	A	1.047e^-5	0.357	DOWNSTREAM enc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
3R	11594071	3R_11594071_SNP [dm3] 3R_15768349_SNP [dm6]	T	C	1.059e^-5	0.357	UPSTREAM CG5623 INTERGENIC
X	5251757	X_5251757_SNP [dm3] X_5357724_SNP [dm6]	C	T	1.067e^-5	0.357	UPSTREAM SK INTRON SK
3R	7462458	3R_7462458_SNP [dm3] 3R_11636736_SNP [dm6]	G	A	1.086e^-5	0.357	SYNONYMOUS_CODING Csk UPSTREAM CR44137	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7017096	2R_7017096_SNP [dm3] 2R_11129591_SNP [dm6]	C	T	1.136e^-5	0.358	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	9484303	3L_9484303_SNP [dm3] 3L_9491203_SNP [dm6]	T	G	1.194e^-5	0.358	INTRON CG32037	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	9868764	X_9868764_SNP [dm3] X_9974731_SNP [dm6]	G	A	1.197e^-5	0.358	INTRON CG43386
3R	6012950	3R_6012950_SNP [dm3] 3R_10187228_SNP [dm6]	C	T	1.212e^-5	0.358	INTRON CG12814
3R	4818934	3R_4818934_SNP [dm3] 3R_8993212_SNP [dm6]	G	A	1.240e^-5	0.358	UPSTREAM CG11975 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	20540759	3L_20540759_DEL [dm3] 3L_20547659_DEL [dm6]	CG	T	1.243e^-5	0.358	INTERGENIC
X	20942798	X_20942798_SNP [dm3] X_21071771_SNP [dm6]	A	G	1.255e^-5	0.358	INTRON bves	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	15654591	2R_15654591_SNP [dm3] 2R_19767086_SNP [dm6]	G	C	1.256e^-5	0.358	UPSTREAM 5SrRNA:CR33353 INTERGENIC
3R	4815832	3R_4815832_SNP [dm3] 3R_8990110_SNP [dm6]	G	A	1.259e^-5	0.358	SYNONYMOUS_CODING CG11970 DOWNSTREAM E_var_3-9
3R	6501185	3R_6501185_SNP [dm3] 3R_10675463_SNP [dm6]	T	A	1.318e^-5	0.359	DOWNSTREAM CG6465 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2L	10503149	2L_10503149_SNP [dm3] 2L_10503149_SNP [dm6]	A	C	1.407e^-5	0.359	INTRON Myo31DF
3L	5238270	3L_5238270_SNP [dm3] 3L_5245170_SNP [dm6]	A	G	1.408e^-5	0.359	INTRON shep
2L	8888053	2L_8888053_SNP [dm3] 2L_8888053_SNP [dm6]	T	A	1.416e^-5	0.359	UPSTREAM CR44415 INTERGENIC	TF binding site mE1_TFBS_cad
3R	5995489	3R_5995489_SNP [dm3] 3R_10169767_SNP [dm6]	G	T	1.426e^-5	0.359	INTRON Best1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	7627931	2L_7627931_DEL [dm3] 2L_7627931_DEL [dm6]	GGC	G	1.428e^-5	0.359	INTERGENIC	TF binding site mE1_TFBS_sens
2L	10873518	2L_10873518_SNP [dm3] 2L_10873518_SNP [dm6]	A	G	1.525e^-5	0.359	INTERGENIC
3R	6014373	3R_6014373_SNP [dm3] 3R_10188651_SNP [dm6]	T	A	1.538e^-5	0.359	INTRON CG12814
2L	13283596	2L_13283596_SNP [dm3] 2L_13283596_SNP [dm6]	C	G	1.573e^-5	0.359	UTR_3_PRIME CG44085 DOWNSTREAM Drep-4
3R	4817263	3R_4817263_SNP [dm3] 3R_8991541_SNP [dm6]	G	T	1.599e^-5	0.359	NON_SYNONYMOUS_CODING E_var_3-9 DOWNSTREAM CG11970
2L	8888091	2L_8888091_SNP [dm3] 2L_8888091_SNP [dm6]	G	T	1.613e^-5	0.359	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	8888771	2L_8888771_SNP [dm3] 2L_8888771_SNP [dm6]	T	A	1.621e^-5	0.359	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	8893686	2L_8893686_SNP [dm3] 2L_8893686_SNP [dm6]	G	A	1.655e^-5	0.359	INTERGENIC
2L	8889335	2L_8889335_SNP [dm3] 2L_8889335_SNP [dm6]	A	T	1.663e^-5	0.359	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
2L	13230934	2L_13230934_SNP [dm3] 2L_13230934_SNP [dm6]	C	G	1.673e^-5	0.359	DOWNSTREAM CG16815 INTERGENIC	TF binding site BDTNP1_TFBS_hb
2L	8885223	2L_8885223_SNP [dm3] 2L_8885223_SNP [dm6]	G	T	1.682e^-5	0.359	INTERGENIC
3R	4450196	3R_4450196_SNP [dm3] 3R_8624474_SNP [dm6]	C	G	1.690e^-5	0.359	INTRON 5-HT2B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15369049	3R_15369049_SNP [dm3] 3R_19543327_SNP [dm6]	G	A	1.715e^-5	0.359	INTRON Dys
2L	14537669	2L_14537669_DEL [dm3] 2L_14537669_DEL [dm6]	AGATTTATATTGATAACTTA...	A	1.717e^-5	0.359	INTERGENIC	TF binding site mE1_TFBS_Ubx
2L	16800591	2L_16800591_SNP [dm3] 2L_16800591_SNP [dm6]	G	A	1.739e^-5	0.359	INTRON Ugt36Bc	TF binding site mE1_TFBS_cad
X	10440823	X_10440823_SNP [dm3] X_10546790_SNP [dm6]	A	G	1.844e^-5	0.359	UPSTREAM spri INTRON spri	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	10441001	X_10441001_SNP [dm3] X_10546968_SNP [dm6]	G	A	1.844e^-5	0.359	UPSTREAM spri INTRON spri	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5971092	2L_5971092_SNP [dm3] 2L_5971092_SNP [dm6]	C	T	1.848e^-5	0.359	UPSTREAM CR43465 DOWNSTREAM Ucp4B INTERGENIC	TF binding site mE1_TFBS_cad
3R	6478518	3R_6478518_SNP [dm3] 3R_10652796_SNP [dm6]	A	G	1.864e^-5	0.359	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	8890113	2L_8890113_SNP [dm3] 2L_8890113_SNP [dm6]	T	G	1.872e^-5	0.359	INTERGENIC
3R	6014393	3R_6014393_SNP [dm3] 3R_10188671_SNP [dm6]	A	C	1.916e^-5	0.359	INTRON CG12814
2L	15305916	2L_15305916_SNP [dm3] 2L_15305916_SNP [dm6]	G	A	1.927e^-5	0.359	INTERGENIC
2L	5015794	2L_5015794_SNP [dm3] 2L_5015794_SNP [dm6]	A	T	1.984e^-5	0.359	SYNONYMOUS_CODING vkg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7808303	2L_7808303_SNP [dm3] 2L_7808303_SNP [dm6]	T	A	2.003e^-5	0.359	INTRON cdc14	TF binding site mE1_TFBS_HSA
2L	8890163	2L_8890163_INS [dm3] 2L_8890163_INS [dm6]	T	TTCTA	2.007e^-5	0.359	INTERGENIC
2L	10873512	2L_10873512_SNP [dm3] 2L_10873512_SNP [dm6]	A	T	2.030e^-5	0.359	INTERGENIC
2L	8888880	2L_8888880_DEL [dm3] 2L_8888880_DEL [dm6]	CCCTCAAAATCCTTATAAAG...	C	2.039e^-5	0.359	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
2L	8888986	2L_8888986_SNP [dm3] 2L_8888986_SNP [dm6]	A	T	2.039e^-5	0.359	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
2L	8888944	2L_8888944_DEL [dm3] 2L_8888944_DEL [dm6]	CAT	C	2.061e^-5	0.359	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
3L	21375865	3L_21375865_DEL [dm3] 3L_21382765_DEL [dm6]	AACG	C	2.069e^-5	0.359	UTR_5_PRIME rgn
2L	10574770	2L_10574770_SNP [dm3] 2L_10574770_SNP [dm6]	C	T	2.074e^-5	0.359	INTRON Trim9
3L	3283510	3L_3283510_SNP [dm3] 3L_3283510_SNP [dm6]	A	C	2.088e^-5	0.359	INTRON CG12017
3R	16175110	3R_16175110_SNP [dm3] 3R_20349388_SNP [dm6]	C	T	2.113e^-5	0.359	INTERGENIC
3R	6538718	3R_6538718_SNP [dm3] 3R_10712996_SNP [dm6]	A	T	2.133e^-5	0.359	INTERGENIC
3R	6011219	3R_6011219_SNP [dm3] 3R_10185497_SNP [dm6]	A	G	2.174e^-5	0.359	INTRON CG12814
2L	12202242	2L_12202242_SNP [dm3] 2L_12202242_SNP [dm6]	T	A	2.180e^-5	0.359	INTRON aret
2L	4457560	2L_4457560_DEL [dm3] 2L_4457560_DEL [dm6]	GG	G	2.192e^-5	0.359	UPSTREAM Gs1l DOWNSTREAM snoRNA:Me18S-C1831 INTRON RpL27A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	1190339	2L_1190339_SNP [dm3] 2L_1190339_SNP [dm6]	C	T	2.192e^-5	0.359	INTRON CG5001
3L	14062871	3L_14062871_SNP [dm3] 3L_14069771_SNP [dm6]	A	G	2.204e^-5	0.359	INTRON CG32138
3R	6377929	3R_6377929_SNP [dm3] 3R_10552207_SNP [dm6]	A	C	2.210e^-5	0.359	INTRON hth
2R	18907121	2R_18907121_SNP [dm3] 2R_23019598_SNP [dm6]	A	T	2.234e^-5	0.359	INTRON twi & 1 other
3L	19439891	3L_19439891_SNP [dm3] 3L_19446791_SNP [dm6]	G	A	2.247e^-5	0.359	UPSTREAM Chd3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	9023539	X_9023539_SNP [dm3] X_9129506_SNP [dm6]	C	A	2.247e^-5	0.359	INTRON fend	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12188129	2L_12188129_SNP [dm3] 2L_12188129_SNP [dm6]	C	A	2.254e^-5	0.359	INTRON aret
X	9342606	X_9342606_SNP [dm3] X_9448573_SNP [dm6]	T	A	2.296e^-5	0.359	INTRON mgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8888907	2L_8888907_SNP [dm3] 2L_8888907_SNP [dm6]	A	G	2.300e^-5	0.359	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
2R	15587692	2R_15587692_SNP [dm3] 2R_19700187_SNP [dm6]	C	T	2.310e^-5	0.359	NON_SYNONYMOUS_CODING Obp56c UPSTREAM Obp56b	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	16495095	2R_16495095_SNP [dm3] 2R_20607590_SNP [dm6]	T	G	2.339e^-5	0.359	DOWNSTREAM bl INTRON Hil	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5064085	2L_5064085_SNP [dm3] 2L_5064085_SNP [dm6]	T	C	2.343e^-5	0.359	UPSTREAM qtc & 1 other INTRON qtc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14062589	3L_14062589_SNP [dm3] 3L_14069489_SNP [dm6]	C	T	2.354e^-5	0.359	INTRON CG32138
2L	5962254	2L_5962254_SNP [dm3] 2L_5962254_SNP [dm6]	A	C	2.364e^-5	0.359	DOWNSTREAM psd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8889165	2L_8889165_SNP [dm3] 2L_8889165_SNP [dm6]	T	C	2.375e^-5	0.359	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
3L	9993334	3L_9993334_SNP [dm3] 3L_10000234_SNP [dm6]	C	A	2.376e^-5	0.359	INTRON dpr6
2L	8890162	2L_8890162_SNP [dm3] 2L_8890162_SNP [dm6]	A	G	2.412e^-5	0.362	INTERGENIC
X	15579895	X_15579895_SNP [dm3] X_15685862_SNP [dm6]	A	T	2.434e^-5	0.362	NON_SYNONYMOUS_CODING CG15599	TF binding site BDTNP1_TFBS_prd mE1_TFBS_sens
3L	3325869	3L_3325869_SNP [dm3] 3L_3325869_SNP [dm6]	C	T	2.448e^-5	0.362	UTR_5_PRIME CG11526 UPSTREAM PHGPx INTRON CG11526	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	5589567	X_5589567_SNP [dm3] X_5695534_SNP [dm6]	T	A	2.479e^-5	0.363	UPSTREAM CG3149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9955561	2R_9955561_SNP [dm3] 2R_14068056_SNP [dm6]	T	A	2.575e^-5	0.369	INTRON Prosap
2L	3514792	2L_3514792_SNP [dm3] 2L_3514792_SNP [dm6]	C	T	2.613e^-5	0.369	UPSTREAM CG17593 & 1 other INTERGENIC
3R	6320297	3R_6320297_SNP [dm3] 3R_10494575_SNP [dm6]	G	T	2.618e^-5	0.369	INTERGENIC
3R	15369087	3R_15369087_SNP [dm3] 3R_19543365_SNP [dm6]	A	G	2.635e^-5	0.369	INTRON Dys
2L	8889906	2L_8889906_SNP [dm3] 2L_8889906_SNP [dm6]	G	A	2.644e^-5	0.369	INTERGENIC
3R	5227901	3R_5227901_SNP [dm3] 3R_9402179_SNP [dm6]	C	T	2.693e^-5	0.369	SYNONYMOUS_CODING CG8132 UPSTREAM RpL34b DOWNSTREAM CG9356	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1190337	2L_1190337_SNP [dm3] 2L_1190337_SNP [dm6]	T	A	2.698e^-5	0.369	INTRON CG5001
3R	5752344	3R_5752344_SNP [dm3] 3R_9926622_SNP [dm6]	G	T	2.704e^-5	0.369	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	6478496	3R_6478496_INS [dm3] 3R_10652774_INS [dm6]	A	AAAAACCTATGGAAAATTAC...	2.719e^-5	0.369	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	4279298	2L_4279298_SNP [dm3] 2L_4279298_SNP [dm6]	T	C	2.730e^-5	0.369	UTR_5_PRIME Art2	TF binding site BDTNP1_TFBS_dl
X	5589661	X_5589661_SNP [dm3] X_5695628_SNP [dm6]	T	C	2.731e^-5	0.369	UPSTREAM CG3149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	15338050	2L_15338050_SNP [dm3] 2L_15338050_SNP [dm6]	T	A	2.798e^-5	0.369	INTERGENIC	TF binding site mE1_TFBS_cad
2R	9974637	2R_9974637_SNP [dm3] 2R_14087132_SNP [dm6]	C	T	2.819e^-5	0.369	INTRON Prosap
2L	7536026	2L_7536026_SNP [dm3] 2L_7536026_SNP [dm6]	C	G	2.824e^-5	0.369	INTRON RapGAP1	TF binding site mE1_TFBS_cad
2L	10873577	2L_10873577_SNP [dm3] 2L_10873577_SNP [dm6]	T	C	2.848e^-5	0.369	INTERGENIC
2L	3515434	2L_3515434_SNP [dm3] 2L_3515434_SNP [dm6]	A	T	2.852e^-5	0.369	UPSTREAM CG33123 INTRON CG17593	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	19439872	3L_19439872_SNP [dm3] 3L_19446772_SNP [dm6]	G	A	2.869e^-5	0.369	UPSTREAM Chd3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	16800595	2L_16800595_SNP [dm3] 2L_16800595_SNP [dm6]	T	G	2.878e^-5	0.369	INTRON Ugt36Bc	TF binding site mE1_TFBS_cad
3L	16336240	3L_16336240_SNP [dm3] 3L_16343140_SNP [dm6]	T	C	2.901e^-5	0.369	NON_SYNONYMOUS_CODING CG4998 INTRON CG4998	TF binding site mE1_TFBS_cad
3R	6011063	3R_6011063_SNP [dm3] 3R_10185341_SNP [dm6]	T	C	2.967e^-5	0.369	INTRON CG12814	TF binding site mE1_TFBS_inv
2L	7627877	2L_7627877_SNP [dm3] 2L_7627877_SNP [dm6]	A	C	2.975e^-5	0.369	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13251989	3L_13251989_SNP [dm3] 3L_13258889_SNP [dm6]	A	G	3.038e^-5	0.369	INTRON caps
2L	8886011	2L_8886011_SNP [dm3] 2L_8886011_SNP [dm6]	A	T	3.056e^-5	0.369	DOWNSTREAM CR44415 INTERGENIC
2L	8888879	2L_8888879_SNP [dm3] 2L_8888879_SNP [dm6]	C	T	3.140e^-5	0.369	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
2L	11062974	2L_11062974_SNP [dm3] 2L_11062974_SNP [dm6]	T	C	3.159e^-5	0.369	INTRON Samuel
2L	8891550	2L_8891550_SNP [dm3] 2L_8891550_SNP [dm6]	C	T	3.175e^-5	0.369	NON_SYNONYMOUS_CODING CG42713
X	5919681	X_5919681_SNP [dm3] X_6025648_SNP [dm6]	T	G	3.193e^-5	0.369	INTERGENIC
X	5919683	X_5919683_SNP [dm3] X_6025650_SNP [dm6]	G	A	3.193e^-5	0.369	INTERGENIC
X	5919699	X_5919699_SNP [dm3] X_6025666_SNP [dm6]	A	C	3.193e^-5	0.369	INTERGENIC
2L	8888786	2L_8888786_SNP [dm3] 2L_8888786_SNP [dm6]	C	A	3.207e^-5	0.369	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
X	14693012	X_14693012_SNP [dm3] X_14798979_SNP [dm6]	A	C	3.224e^-5	0.369	NON_SYNONYMOUS_CODING rut	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5919707	X_5919707_SNP [dm3] X_6025674_SNP [dm6]	G	T	3.236e^-5	0.369	INTERGENIC
3R	11594109	3R_11594109_SNP [dm3] 3R_15768387_SNP [dm6]	A	T	3.249e^-5	0.369	UPSTREAM CG5623 INTERGENIC
2L	10873588	2L_10873588_SNP [dm3] 2L_10873588_SNP [dm6]	T	C	3.276e^-5	0.369	INTERGENIC
3L	21437983	3L_21437983_SNP [dm3] 3L_21444883_SNP [dm6]	G	A	3.284e^-5	0.369	UPSTREAM CG5656 & 1 other INTERGENIC
2L	17640282	2L_17640282_SNP [dm3] 2L_17640282_SNP [dm6]	C	T	3.298e^-5	0.369	INTERGENIC
X	10443035	X_10443035_SNP [dm3] X_10549002_SNP [dm6]	C	T	3.361e^-5	0.369	INTRON spri
2L	9500007	2L_9500007_SNP [dm3] 2L_9500007_SNP [dm6]	C	T	3.416e^-5	0.369	INTRON CG33298
2L	2709813	2L_2709813_SNP [dm3] 2L_2709813_SNP [dm6]	G	C	3.422e^-5	0.369	INTRON CG31690
2L	10519824	2L_10519824_SNP [dm3] 2L_10519824_SNP [dm6]	C	T	3.424e^-5	0.369	DOWNSTREAM Lrr47 INTERGENIC
2L	7538448	2L_7538448_SNP [dm3] 2L_7538448_SNP [dm6]	C	T	3.462e^-5	0.369	INTRON RapGAP1
2R	18434386	2R_18434386_SNP [dm3] 2R_22546881_SNP [dm6]	T	C	3.583e^-5	0.369	UPSTREAM px INTRON px	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4503748	2L_4503748_SNP [dm3] 2L_4503748_SNP [dm6]	T	C	3.660e^-5	0.369	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4413574	3L_4413574_SNP [dm3] 3L_4413574_SNP [dm6]	A	C	3.665e^-5	0.369	UPSTREAM DOR INTRON DOR	TF binding site BDTNP1_TFBS_hb
2L	8888925	2L_8888925_DEL [dm3] 2L_8888925_DEL [dm6]	AC	A	3.677e^-5	0.369	UPSTREAM CR44415 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
2L	8888928	2L_8888928_DEL [dm3] 2L_8888928_DEL [dm6]	AAATAAAGG	A	3.677e^-5	0.369	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
3L	7628042	3L_7628042_SNP [dm3] 3L_7634942_SNP [dm6]	C	A	3.677e^-5	0.369	INTRON CG33275	TF binding site mE1_TFBS_HSA
3R	6046672	3R_6046672_SNP [dm3] 3R_10220950_SNP [dm6]	T	C	3.685e^-5	0.369	UTR_3_PRIME Syn
2L	3082821	2L_3082821_SNP [dm3] 2L_3082821_SNP [dm6]	G	A	3.722e^-5	0.369	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8888827	2L_8888827_SNP [dm3] 2L_8888827_SNP [dm6]	A	G	3.731e^-5	0.369	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3R	13959175	3R_13959175_SNP [dm3] 3R_18133453_SNP [dm6]	T	A	3.734e^-5	0.369	UTR_3_PRIME sr
3L	3283505	3L_3283505_SNP [dm3] 3L_3283505_SNP [dm6]	T	C	3.737e^-5	0.369	INTRON CG12017
2R	17978473	2R_17978473_SNP [dm3] 2R_22090968_SNP [dm6]	A	G	3.747e^-5	0.369	SPLICE_SITE_REGION CG44163 UPSTREAM CG43393 DOWNSTREAM CG11073 INTRON CG44163
3L	302483	3L_302483_SNP [dm3] 3L_302483_SNP [dm6]	C	A	3.747e^-5	0.369	SYNONYMOUS_CODING RhoGEF3	TF binding site mE1_TFBS_HSA
2R	11618538	2R_11618538_SNP [dm3] 2R_15731033_SNP [dm6]	A	T	3.750e^-5	0.369	INTRON CG30089	TF binding site mE1_TFBS_HSA
2R	12601886	2R_12601886_SNP [dm3] 2R_16714381_SNP [dm6]	G	C	3.786e^-5	0.369	INTRON CG30463
2L	10147403	2L_10147403_SNP [dm3] 2L_10147403_SNP [dm6]	T	C	3.798e^-5	0.369	INTRON CG44153 & 1 other	TF binding site mE1_TFBS_cad
3L	302568	3L_302568_SNP [dm3] 3L_302568_SNP [dm6]	C	T	3.813e^-5	0.369	INTRON RhoGEF3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17578684	X_17578684_SNP [dm3] X_17684651_SNP [dm6]	T	G	3.819e^-5	0.369	SYNONYMOUS_CODING chas
2L	2373193	2L_2373193_SNP [dm3] 2L_2373193_SNP [dm6]	G	A	3.824e^-5	0.369	SYNONYMOUS_CODING CG3609	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8429766	X_8429766_SNP [dm3] X_8535733_SNP [dm6]	A	T	3.840e^-5	0.369	INTRON Nrg
3R	6464772	3R_6464772_SNP [dm3] 3R_10639050_SNP [dm6]	G	A	3.845e^-5	0.369	UTR_5_PRIME hth UPSTREAM CR44018	TF binding site BDTNP1_TFBS_dl
2L	10873515	2L_10873515_SNP [dm3] 2L_10873515_SNP [dm6]	A	T	3.860e^-5	0.369	INTERGENIC
3R	6480564	3R_6480564_SNP [dm3] 3R_10654842_SNP [dm6]	C	T	3.900e^-5	0.369	INTERGENIC
2L	14538403	2L_14538403_SNP [dm3] 2L_14538403_SNP [dm6]	T	A	3.917e^-5	0.369	INTERGENIC	TF binding site mE1_TFBS_Kr
X	16748083	X_16748083_SNP [dm3] X_16854050_SNP [dm6]	C	G	3.927e^-5	0.369	UPSTREAM CG13003 INTRON CG13003
3L	3200503	3L_3200503_SNP [dm3] 3L_3200503_SNP [dm6]	T	A	3.936e^-5	0.369	INTRON gry	TF binding site mE1_TFBS_sens
X	3248686	X_3248686_DEL [dm3] X_3354653_DEL [dm6]	TTGTATCT	T	3.956e^-5	0.369	INTERGENIC
X	3088659	X_3088659_SNP [dm3] X_3194626_SNP [dm6]	G	A	3.979e^-5	0.369	INTRON dnc
2L	10461455	2L_10461455_SNP [dm3] 2L_10461455_SNP [dm6]	T	C	3.993e^-5	0.369	SYNONYMOUS_CODING LM408	TF binding site mE1_TFBS_cad
X	5590589	X_5590589_SNP [dm3] X_5696556_SNP [dm6]	T	C	4.024e^-5	0.369	UPSTREAM CR42794 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	5919749	X_5919749_SNP [dm3] X_6025716_SNP [dm6]	T	C	4.083e^-5	0.369	INTERGENIC
X	9497052	X_9497052_SNP [dm3] X_9603019_SNP [dm6]	T	G	4.094e^-5	0.369	SYNONYMOUS_CODING Gga	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	10433840	X_10433840_SNP [dm3] X_10539807_SNP [dm6]	T	C	4.094e^-5	0.369	INTRON spri	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3061074	2L_3061074_SNP [dm3] 2L_3061074_SNP [dm6]	C	T	4.102e^-5	0.369	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14462349	2R_14462349_SNP [dm3] 2R_18574844_SNP [dm6]	G	A	4.118e^-5	0.369	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5951203	3R_5951203_SNP [dm3] 3R_10125481_SNP [dm6]	A	G	4.176e^-5	0.369	UTR_5_PRIME knk DOWNSTREAM tws
2L	13230762	2L_13230762_SNP [dm3] 2L_13230762_SNP [dm6]	A	G	4.185e^-5	0.369	DOWNSTREAM CG16815 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	5304082	3R_5304082_SNP [dm3] 3R_9478360_SNP [dm6]	C	A	4.189e^-5	0.369	INTRON CG16779
2L	4503817	2L_4503817_SNP [dm3] 2L_4503817_SNP [dm6]	T	C	4.247e^-5	0.369	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	21526995	3L_21526995_SNP [dm3] 3L_21533895_SNP [dm6]	C	T	4.254e^-5	0.369	UPSTREAM ppk5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	5314473	2R_5314473_SNP [dm3] 2R_9426968_SNP [dm6]	G	C	4.262e^-5	0.369	UTR_5_PRIME Pdk DOWNSTREAM prel	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10873469	2L_10873469_SNP [dm3] 2L_10873469_SNP [dm6]	G	T	4.263e^-5	0.369	INTERGENIC
3R	6472567	3R_6472567_SNP [dm3] 3R_10646845_SNP [dm6]	G	A	4.283e^-5	0.369	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
2R	6978839	2R_6978839_SNP [dm3] 2R_11091334_SNP [dm6]	C	A	4.319e^-5	0.369	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	13331781	2L_13331781_SNP [dm3] 2L_13331781_SNP [dm6]	T	C	4.390e^-5	0.369	UPSTREAM CG43778 INTERGENIC
2L	10147778	2L_10147778_SNP [dm3] 2L_10147778_SNP [dm6]	T	G	4.396e^-5	0.369	INTRON CG44153 & 1 other	TF binding site mE1_TFBS_cad
2L	8888833	2L_8888833_SNP [dm3] 2L_8888833_SNP [dm6]	G	A	4.435e^-5	0.369	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3L	3951594	3L_3951594_SNP [dm3] 3L_3951594_SNP [dm6]	T	A	4.480e^-5	0.369	INTRON CG14984
2R	11618546	2R_11618546_SNP [dm3] 2R_15731041_SNP [dm6]	G	A	4.488e^-5	0.369	INTRON CG30089	TF binding site mE1_TFBS_HSA
X	15753820	X_15753820_SNP [dm3] X_15859787_SNP [dm6]	T	A	4.509e^-5	0.369	UPSTREAM Gbeta13F & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	10503131	2L_10503131_SNP [dm3] 2L_10503131_SNP [dm6]	T	C	4.525e^-5	0.369	INTRON Myo31DF
3L	10023323	3L_10023323_SNP [dm3] 3L_10030223_SNP [dm6]	A	T	4.545e^-5	0.369	UPSTREAM CR45155 INTRON dpr6
X	12722960	X_12722960_SNP [dm3] X_12828927_SNP [dm6]	G	T	4.558e^-5	0.369	INTRON Pde9
3L	1896605	3L_1896605_SNP [dm3] 3L_1896605_SNP [dm6]	C	T	4.596e^-5	0.369	INTRON CG1887	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8885235	2L_8885235_INS [dm3] 2L_8885235_INS [dm6]	T	TT	4.598e^-5	0.369	INTERGENIC
3R	11594007	3R_11594007_SNP [dm3] 3R_15768285_SNP [dm6]	G	T	4.624e^-5	0.369	UPSTREAM CG5623 INTERGENIC
2L	8885281	2L_8885281_DEL [dm3] 2L_8885281_DEL [dm6]	AATCACCCGAAGTGTTCCAT...	A	4.650e^-5	0.369	INTERGENIC
3R	16175101	3R_16175101_SNP [dm3] 3R_20349379_SNP [dm6]	T	C	4.668e^-5	0.369	INTERGENIC
2L	8890159	2L_8890159_SNP [dm3] 2L_8890159_SNP [dm6]	A	T	4.675e^-5	0.369	INTERGENIC
2L	6045107	2L_6045107_SNP [dm3] 2L_6045107_SNP [dm6]	C	T	4.687e^-5	0.369	SYNONYMOUS_CODING ade2 DOWNSTREAM mir-966	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	12710555	2R_12710555_SNP [dm3] 2R_16823050_SNP [dm6]	A	T	4.713e^-5	0.369	INTERGENIC
X	16114868	X_16114868_SNP [dm3] X_16220835_SNP [dm6]	C	G	4.715e^-5	0.369	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	3492624	3L_3492624_SNP [dm3] 3L_3492624_SNP [dm6]	C	A	4.726e^-5	0.369	INTRON CG42324
2L	14748882	2L_14748882_DEL [dm3] 2L_14748882_DEL [dm6]	TTT	T	4.738e^-5	0.369	INTERGENIC
3L	21527855	3L_21527855_SNP [dm3] 3L_21534755_SNP [dm6]	C	T	4.764e^-5	0.369	SYNONYMOUS_CODING ppk5	TF binding site mE1_TFBS_inv
3L	21532576	3L_21532576_SNP [dm3] 3L_21539476_SNP [dm6]	T	G	4.764e^-5	0.369	UPSTREAM VhaM9.7-b & 1 other DOWNSTREAM Rpn10 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	21547143	3L_21547143_SNP [dm3] 3L_21554043_SNP [dm6]	C	T	4.764e^-5	0.369	NON_SYNONYMOUS_CODING Wnk
3L	5237909	3L_5237909_SNP [dm3] 3L_5244809_SNP [dm6]	G	T	4.765e^-5	0.369	INTRON shep
3L	3283504	3L_3283504_SNP [dm3] 3L_3283504_SNP [dm6]	C	A	4.784e^-5	0.369	INTRON CG12017
X	8512828	X_8512828_SNP [dm3] X_8618795_SNP [dm6]	A	G	4.788e^-5	0.369	INTERGENIC	regulatory region REDfly_CRMs
2L	7634265	2L_7634265_SNP [dm3] 2L_7634265_SNP [dm6]	T	C	4.817e^-5	0.369	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	16264777	3R_16264777_SNP [dm3] 3R_20439055_SNP [dm6]	A	C	4.843e^-5	0.369	INTRON Gfrl
3L	4092421	3L_4092421_SNP [dm3] 3L_4092421_SNP [dm6]	T	C	4.856e^-5	0.369	UTR_3_PRIME CG14989 UPSTREAM CG14990	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11490584	2L_11490584_SNP [dm3] 2L_11490584_SNP [dm6]	C	A	4.856e^-5	0.369	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	14060614	2R_14060614_SNP [dm3] 2R_18173109_SNP [dm6]	C	T	4.862e^-5	0.369	UPSTREAM Dgp-1 & 1 other EXON CR45315	TF binding site BDTNP1_TFBS_dl
3R	6320296	3R_6320296_SNP [dm3] 3R_10494574_SNP [dm6]	G	A	4.871e^-5	0.369	INTERGENIC
3L	7147859	3L_7147859_SNP [dm3] 3L_7154759_SNP [dm6]	T	C	4.878e^-5	0.369	INTRON corn	TF binding site BDTNP1_TFBS_twi
2R	18434461	2R_18434461_SNP [dm3] 2R_22546956_SNP [dm6]	A	G	4.899e^-5	0.369	UPSTREAM px INTRON px	TF binding site BDTNP1_TFBS_dl
3L	1605916	3L_1605916_SNP [dm3] 3L_1605916_SNP [dm6]	G	A	4.915e^-5	0.369	SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170
X	5251777	X_5251777_SNP [dm3] X_5357744_SNP [dm6]	G	C	4.916e^-5	0.369	UPSTREAM SK INTRON SK
3L	10560160	3L_10560160_SNP [dm3] 3L_10567060_SNP [dm6]	C	A	4.924e^-5	0.369	INTRON A2bp1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1773058	3L_1773058_SNP [dm3] 3L_1773058_SNP [dm6]	C	T	4.988e^-5	0.373	SYNONYMOUS_CODING CG13933 UPSTREAM CR44351	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9127690	2L_9127690_SNP [dm3] 2L_9127690_SNP [dm6]	T	C	5.009e^-5	0.373	INTRON CG32982	TF binding site BDTNP1_TFBS_dl
3L	3283511	3L_3283511_SNP [dm3] 3L_3283511_SNP [dm6]	G	A	5.072e^-5	0.374	INTRON CG12017
2L	15348676	2L_15348676_SNP [dm3] 2L_15348676_SNP [dm6]	T	C	5.075e^-5	0.374	INTERGENIC
2R	6811198	2R_6811198_SNP [dm3] 2R_10923693_SNP [dm6]	T	A	5.123e^-5	0.374	INTERGENIC
X	8398908	X_8398908_SNP [dm3] X_8504875_SNP [dm6]	T	G	5.124e^-5	0.374	INTRON CG33181
3L	3791730	3L_3791730_SNP [dm3] 3L_3791730_SNP [dm6]	G	A	5.146e^-5	0.374	DOWNSTREAM CG32266 INTRON CG32264	TF binding site mE1_TFBS_HSA
2L	8886012	2L_8886012_SNP [dm3] 2L_8886012_SNP [dm6]	C	T	5.152e^-5	0.374	DOWNSTREAM CR44415 INTERGENIC
2R	14522799	2R_14522799_SNP [dm3] 2R_18635294_SNP [dm6]	G	A	5.182e^-5	0.374	INTRON CG30122	TF binding site BDTNP1_TFBS_dl
X	7310436	X_7310436_SNP [dm3] X_7416403_SNP [dm6]	C	T	5.185e^-5	0.374	UPSTREAM CG34337 INTERGENIC
2L	3515914	2L_3515914_SNP [dm3] 2L_3515914_SNP [dm6]	A	G	5.229e^-5	0.374	SYNONYMOUS_CODING CG17593	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6390924	3R_6390924_SNP [dm3] 3R_10565202_SNP [dm6]	A	G	5.256e^-5	0.374	INTRON hth
2L	11530439	2L_11530439_SNP [dm3] 2L_11530439_SNP [dm6]	A	G	5.269e^-5	0.374	INTRON CG31706
X	8746453	X_8746453_SNP [dm3] X_8852420_SNP [dm6]	C	A	5.300e^-5	0.374	INTRON CG12075
2L	12177229	2L_12177229_SNP [dm3] 2L_12177229_SNP [dm6]	G	T	5.312e^-5	0.374	INTRON aret & 1 other	TF binding site BDTNP1_TFBS_z
3L	9373371	3L_9373371_SNP [dm3] 3L_9380271_SNP [dm6]	T	G	5.320e^-5	0.374	UPSTREAM Hsp67Ba EXON CR43481	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2365996	X_2365996_SNP [dm3] X_2471963_SNP [dm6]	A	C	5.338e^-5	0.374	INTRON trol
2R	10852680	2R_10852680_SNP [dm3] 2R_14965175_SNP [dm6]	A	G	5.389e^-5	0.374	UPSTREAM ckn INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	5251741	X_5251741_SNP [dm3] X_5357708_SNP [dm6]	G	T	5.405e^-5	0.374	UPSTREAM SK INTRON SK
3R	5996014	3R_5996014_SNP [dm3] 3R_10170292_SNP [dm6]	A	G	5.409e^-5	0.374	UTR_5_PRIME Best1 DOWNSTREAM CG12814	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	15080341	3R_15080341_SNP [dm3] 3R_19254619_SNP [dm6]	T	C	5.410e^-5	0.374	INTERGENIC
2R	9569367	2R_9569367_SNP [dm3] 2R_13681862_SNP [dm6]	T	A	5.460e^-5	0.376	INTRON fas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9499985	2L_9499985_SNP [dm3] 2L_9499985_SNP [dm6]	C	G	5.503e^-5	0.377	INTRON CG33298
3L	3394630	3L_3394630_SNP [dm3] 3L_3394630_SNP [dm6]	G	A	5.510e^-5	0.377	DOWNSTREAM CR45737 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	3514784	2L_3514784_SNP [dm3] 2L_3514784_SNP [dm6]	G	A	5.539e^-5	0.377	UPSTREAM CG17593 & 1 other INTERGENIC
2R	988213	2R_988213_SNP [dm3] 2R_5100708_SNP [dm6]	C	T	5.557e^-5	0.377	INTERGENIC	transposable element FlyBase
3L	24160009	3L_24160009_SNP [dm3] 3L_24166909_SNP [dm6]	A	G	5.586e^-5	0.377	INTRON Snap25
2L	10373650	2L_10373650_SNP [dm3] 2L_10373650_SNP [dm6]	A	G	5.654e^-5	0.377	UTR_3_PRIME CG33303 DOWNSTREAM CG33303 INTRON rho-5
2L	15339922	2L_15339922_SNP [dm3] 2L_15339922_SNP [dm6]	G	A	5.671e^-5	0.377	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	11618521	2R_11618521_SNP [dm3] 2R_15731016_SNP [dm6]	A	T	5.705e^-5	0.377	INTRON CG30089	TF binding site mE1_TFBS_HSA
2L	5641693	2L_5641693_SNP [dm3] 2L_5641693_SNP [dm6]	A	G	5.714e^-5	0.377	UPSTREAM mir-963 & 1 other DOWNSTREAM mir-959 & 3 others INTRON CG31646
3R	5997082	3R_5997082_SNP [dm3] 3R_10171360_SNP [dm6]	C	G	5.718e^-5	0.377	UTR_3_PRIME CG12814 UPSTREAM Best1	TF binding site BDTNP1_TFBS_dl
2L	12177261	2L_12177261_DEL [dm3] 2L_12177261_DEL [dm6]	TAT	T	5.722e^-5	0.377	INTRON aret & 1 other	TF binding site BDTNP1_TFBS_z
3R	5151494	3R_5151494_SNP [dm3] 3R_9325772_SNP [dm6]	A	T	5.733e^-5	0.377	INTRON CG8861
X	5590603	X_5590603_SNP [dm3] X_5696570_SNP [dm6]	A	T	5.740e^-5	0.377	UPSTREAM CR42794 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	14062823	3L_14062823_SNP [dm3] 3L_14069723_SNP [dm6]	G	C	5.770e^-5	0.377	INTRON CG32138
3R	13271285	3R_13271285_SNP [dm3] 3R_17445563_SNP [dm6]	T	A	5.772e^-5	0.377	SPLICE_SITE_REGION CG5873 INTRON CG5873
3L	3320204	3L_3320204_DEL [dm3] 3L_3320204_DEL [dm6]	ATTGTAGAGTCTAGGCATGT...	A	5.813e^-5	0.379	UPSTREAM PIG-C & 1 other INTRON CG12016 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
2L	8889159	2L_8889159_SNP [dm3] 2L_8889159_SNP [dm6]	A	T	5.871e^-5	0.38	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
2L	6888563	2L_6888563_SNP [dm3] 2L_6888563_SNP [dm6]	G	C	5.926e^-5	0.38	INTRON Nlg2	TF binding site mE1_TFBS_chinmo
3R	4793654	3R_4793654_SNP [dm3] 3R_8967932_SNP [dm6]	C	A	5.937e^-5	0.38	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11033811	2L_11033811_SNP [dm3] 2L_11033811_SNP [dm6]	T	A	5.959e^-5	0.38	UPSTREAM CG18666 INTRON Samuel
2R	8539173	2R_8539173_SNP [dm3] 2R_12651668_SNP [dm6]	A	G	5.964e^-5	0.38	SYNONYMOUS_CODING CG8778
2L	3515037	2L_3515037_SNP [dm3] 2L_3515037_SNP [dm6]	T	C	5.965e^-5	0.38	SYNONYMOUS_CODING CG17593 UPSTREAM CG33123
2L	2718851	2L_2718851_SNP [dm3] 2L_2718851_SNP [dm6]	G	A	6.028e^-5	0.38	SYNONYMOUS_CODING CG31690	TF binding site mE1_TFBS_chinmo
3R	23209567	3R_23209567_SNP [dm3] 3R_27383845_SNP [dm6]	A	T	6.031e^-5	0.38	INTRON side
3R	1112755	3R_1112755_SNP [dm3] 3R_5287033_SNP [dm6]	G	C	6.066e^-5	0.38	START_GAINED mtd UTR_5_PRIME mtd INTRON mtd
2L	8888970	2L_8888970_SNP [dm3] 2L_8888970_SNP [dm6]	T	G	6.077e^-5	0.38	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
2L	8226470	2L_8226470_SNP [dm3] 2L_8226470_SNP [dm6]	C	G	6.078e^-5	0.38	SYNONYMOUS_CODING Pvr
X	2245749	X_2245749_SNP [dm3] X_2351716_SNP [dm6]	C	T	6.097e^-5	0.38	INTRON ptr
2L	520743	2L_520743_SNP [dm3] 2L_520743_SNP [dm6]	C	T	6.099e^-5	0.38	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	5421482	3R_5421482_SNP [dm3] 3R_9595760_SNP [dm6]	T	G	6.141e^-5	0.381	INTRON CG8312	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	20942881	3L_20942881_SNP [dm3] 3L_20949781_SNP [dm6]	A	C	6.174e^-5	0.382	UPSTREAM fng DOWNSTREAM CR45243 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	5251766	X_5251766_SNP [dm3] X_5357733_SNP [dm6]	C	T	6.217e^-5	0.384	UPSTREAM SK INTRON SK
3R	5410565	3R_5410565_SNP [dm3] 3R_9584843_SNP [dm6]	G	T	6.241e^-5	0.384	INTRON CG8301	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5848411	X_5848411_SNP [dm3] X_5954378_SNP [dm6]	A	T	6.315e^-5	0.387	DOWNSTREAM CG6048 INTERGENIC
2L	3061029	2L_3061029_SNP [dm3] 2L_3061029_SNP [dm6]	T	C	6.385e^-5	0.389	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12342345	2R_12342345_SNP [dm3] 2R_16454840_SNP [dm6]	C	A	6.400e^-5	0.389	INTERGENIC
2L	11484811	2L_11484811_SNP [dm3] 2L_11484811_SNP [dm6]	G	A	6.498e^-5	0.389	UTR_5_PRIME sala & 1 other UPSTREAM CG43355	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8888978	2L_8888978_SNP [dm3] 2L_8888978_SNP [dm6]	A	G	6.513e^-5	0.389	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
2L	8885068	2L_8885068_SNP [dm3] 2L_8885068_SNP [dm6]	G	A	6.580e^-5	0.389	INTERGENIC
2L	6012543	2L_6012543_SNP [dm3] 2L_6012543_SNP [dm6]	G	T	6.589e^-5	0.389	UPSTREAM CG9098 DOWNSTREAM H2.0 INTERGENIC
2L	4457591	2L_4457591_SNP [dm3] 2L_4457591_SNP [dm6]	C	A	6.620e^-5	0.389	UPSTREAM Gs1l DOWNSTREAM snoRNA:Me18S-C1831 INTRON RpL27A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	9751350	3L_9751350_SNP [dm3] 3L_9758250_SNP [dm6]	G	C	6.655e^-5	0.389	INTRON CG42268
2L	6109083	2L_6109083_SNP [dm3] 2L_6109083_SNP [dm6]	G	A	6.697e^-5	0.389	UPSTREAM stai INTRON stai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	18160861	X_18160861_SNP [dm3] X_18266828_SNP [dm6]	G	A	6.733e^-5	0.389	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6484207	3R_6484207_SNP [dm3] 3R_10658485_SNP [dm6]	C	T	6.750e^-5	0.389	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8885684	2L_8885684_SNP [dm3] 2L_8885684_SNP [dm6]	C	T	6.763e^-5	0.389	INTERGENIC
3R	7227149	3R_7227149_SNP [dm3] 3R_11401427_SNP [dm6]	C	T	6.774e^-5	0.389	UTR_3_PRIME pros
2L	20507098	2L_20507098_SNP [dm3] 2L_20507098_SNP [dm6]	C	T	6.778e^-5	0.389	INTERGENIC
2L	8886772	2L_8886772_SNP [dm3] 2L_8886772_SNP [dm6]	C	A	6.791e^-5	0.389	DOWNSTREAM CR44415 INTERGENIC	TF binding site mE1_TFBS_cnc
2L	6554931	2L_6554931_DEL [dm3] 2L_6554931_DEL [dm6]	TGTA	T	6.802e^-5	0.389	DOWNSTREAM Osm6 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	9748633	3L_9748633_SNP [dm3] 3L_9755533_SNP [dm6]	A	C	6.815e^-5	0.389	INTRON CG42268
3L	15043516	3L_15043516_SNP [dm3] 3L_15050416_SNP [dm6]	T	A	6.829e^-5	0.389	UTR_3_PRIME CG12310 UPSTREAM CG43678 & 1 other DOWNSTREAM CG43679 INTRON Sytbeta
2L	10873549	2L_10873549_SNP [dm3] 2L_10873549_SNP [dm6]	T	G	6.834e^-5	0.389	INTERGENIC
X	2778674	X_2778674_SNP [dm3] X_2884641_SNP [dm6]	G	A	6.869e^-5	0.389	UPSTREAM CG14418 DOWNSTREAM CG14419 INTRON kirre
X	10900577	X_10900577_SNP [dm3] X_11006544_SNP [dm6]	A	T	6.929e^-5	0.389	INTRON CG42339
2L	8096039	2L_8096039_SNP [dm3] 2L_8096039_SNP [dm6]	G	C	6.935e^-5	0.389	INTRON Bsg
3R	1264742	3R_1264742_SNP [dm3] 3R_5439020_SNP [dm6]	T	C	6.963e^-5	0.389	INTRON CG14669	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3R	7491038	3R_7491038_SNP [dm3] 3R_11665316_SNP [dm6]	G	T	6.964e^-5	0.389	INTRON CG42327	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7491061	3R_7491061_SNP [dm3] 3R_11665339_SNP [dm6]	C	G	6.964e^-5	0.389	INTRON CG42327	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7224275	3R_7224275_SNP [dm3] 3R_11398553_SNP [dm6]	C	A	6.988e^-5	0.389	UTR_3_PRIME pros
3R	10057300	3R_10057300_SNP [dm3] 3R_14231578_SNP [dm6]	T	C	7.012e^-5	0.389	INTERGENIC
3L	10026596	3L_10026596_SNP [dm3] 3L_10033496_SNP [dm6]	A	G	7.021e^-5	0.389	INTRON dpr6
3L	19429202	3L_19429202_SNP [dm3] 3L_19436102_SNP [dm6]	A	T	7.074e^-5	0.389	INTERGENIC
2L	7271422	2L_7271422_SNP [dm3] 2L_7271422_SNP [dm6]	C	T	7.090e^-5	0.389	INTRON Wnt4	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	9751468	3L_9751468_SNP [dm3] 3L_9758368_SNP [dm6]	T	G	7.133e^-5	0.389	INTRON CG42268
2R	11618549	2R_11618549_DEL [dm3] 2R_15731044_DEL [dm6]	ATA	A	7.200e^-5	0.389	INTRON CG30089	TF binding site mE1_TFBS_HSA
2R	11618559	2R_11618559_SNP [dm3] 2R_15731054_SNP [dm6]	C	G	7.200e^-5	0.389	INTRON CG30089
3L	18136315	3L_18136315_SNP [dm3] 3L_18143215_SNP [dm6]	C	T	7.214e^-5	0.389	INTRON gk
X	3710015	X_3710015_SNP [dm3] X_3815982_SNP [dm6]	C	T	7.237e^-5	0.389	INTRON ec	TF binding site BDTNP1_TFBS_twi
2R	15087083	2R_15087083_SNP [dm3] 2R_19199578_SNP [dm6]	A	G	7.238e^-5	0.389	INTRON hppy
2R	15810370	2R_15810370_SNP [dm3] 2R_19922865_SNP [dm6]	A	G	7.269e^-5	0.389	INTERGENIC
X	3248697	X_3248697_SNP [dm3] X_3354664_SNP [dm6]	T	G	7.271e^-5	0.389	INTERGENIC
2L	5032128	2L_5032128_SNP [dm3] 2L_5032128_SNP [dm6]	T	C	7.283e^-5	0.389	NON_SYNONYMOUS_CODING Cg25C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7231860	3R_7231860_SNP [dm3] 3R_11406138_SNP [dm6]	A	T	7.317e^-5	0.389	UTR_3_PRIME pros
2R	12710526	2R_12710526_SNP [dm3] 2R_16823021_SNP [dm6]	T	A	7.355e^-5	0.389	INTERGENIC
2L	9780833	2L_9780833_SNP [dm3] 2L_9780833_SNP [dm6]	C	A	7.374e^-5	0.389	INTERGENIC
3L	8908962	3L_8908962_SNP [dm3] 3L_8915862_SNP [dm6]	C	T	7.388e^-5	0.389	DOWNSTREAM CR43970 INTRON Tsp66E
2L	3060270	2L_3060270_SNP [dm3] 2L_3060270_SNP [dm6]	T	G	7.414e^-5	0.389	NON_SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8888943	2L_8888943_SNP [dm3] 2L_8888943_SNP [dm6]	G	A	7.436e^-5	0.389	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
2L	4457556	2L_4457556_SNP [dm3] 2L_4457556_SNP [dm6]	A	G	7.460e^-5	0.389	UPSTREAM Gs1l DOWNSTREAM snoRNA:Me18S-C1831 INTRON RpL27A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	6275715	X_6275715_SNP [dm3] X_6381682_SNP [dm6]	C	A	7.468e^-5	0.389	INTERGENIC
3R	6533877	3R_6533877_SNP [dm3] 3R_10708155_SNP [dm6]	G	T	7.485e^-5	0.389	NON_SYNONYMOUS_CODING CG31278 DOWNSTREAM CG14684 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	17593968	X_17593968_SNP [dm3] X_17699935_SNP [dm6]	A	G	7.493e^-5	0.389	UTR_3_PRIME CG8188 DOWNSTREAM CG8188	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	20135290	2R_20135290_SNP [dm3] 2R_24247767_SNP [dm6]	T	A	7.498e^-5	0.389	INTRON nord
2L	10873535	2L_10873535_DEL [dm3] 2L_10873535_DEL [dm6]	ACCCCAATTCGTT...	A	7.504e^-5	0.389	INTERGENIC
2L	3629942	2L_3629942_SNP [dm3] 2L_3629942_SNP [dm6]	C	T	7.531e^-5	0.389	INTRON for
3L	1902722	3L_1902722_SNP [dm3] 3L_1902722_SNP [dm6]	A	G	7.592e^-5	0.389	INTRON CG1887	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14684173	3R_14684173_SNP [dm3] 3R_18858451_SNP [dm6]	T	A	7.597e^-5	0.389	INTERGENIC
3L	11789236	3L_11789236_SNP [dm3] 3L_11796136_SNP [dm6]	T	C	7.633e^-5	0.389	SYNONYMOUS_CODING Klp68D DOWNSTREAM CG10907	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5251852	X_5251852_SNP [dm3] X_5357819_SNP [dm6]	G	T	7.636e^-5	0.389	UPSTREAM SK INTRON SK
2L	10873581	2L_10873581_SNP [dm3] 2L_10873581_SNP [dm6]	T	G	7.650e^-5	0.389	INTERGENIC
2L	10137372	2L_10137372_SNP [dm3] 2L_10137372_SNP [dm6]	A	G	7.687e^-5	0.389	START_GAINED CG44153 UTR_5_PRIME CG44153	TF binding site mE1_TFBS_cad
3R	857561	3R_857561_SNP [dm3] 3R_5031839_SNP [dm6]	A	C	7.688e^-5	0.389	INTERGENIC
X	2775744	X_2775744_SNP [dm3] X_2881711_SNP [dm6]	C	G	7.713e^-5	0.389	DOWNSTREAM CG14418 INTRON kirre
X	16914317	X_16914317_SNP [dm3] X_17020284_SNP [dm6]	C	A	7.749e^-5	0.389	INTRON CG45002
3L	21349541	3L_21349541_SNP [dm3] 3L_21356441_SNP [dm6]	C	T	7.758e^-5	0.389	UPSTREAM CG12971 INTRON CG12971
3R	16523148	3R_16523148_SNP [dm3] 3R_20697426_SNP [dm6]	T	C	7.758e^-5	0.389	INTRON Oamb
X	7470945	X_7470945_SNP [dm3] X_7576912_SNP [dm6]	G	A	7.799e^-5	0.389	DOWNSTREAM CG11369 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Kr
2L	12126849	2L_12126849_SNP [dm3] 2L_12126849_SNP [dm6]	C	A	7.837e^-5	0.389	SYNONYMOUS_CODING CG17211	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	12126915	2L_12126915_SNP [dm3] 2L_12126915_SNP [dm6]	T	C	7.837e^-5	0.389	SYNONYMOUS_CODING CG17211
X	17693891	X_17693891_SNP [dm3] X_17799858_SNP [dm6]	A	T	7.845e^-5	0.389	INTRON OdsH	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	8888852	2L_8888852_SNP [dm3] 2L_8888852_SNP [dm6]	T	A	7.865e^-5	0.389	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
2L	8888902	2L_8888902_SNP [dm3] 2L_8888902_SNP [dm6]	T	C	7.865e^-5	0.389	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
3R	5994806	3R_5994806_SNP [dm3] 3R_10169084_SNP [dm6]	A	G	7.874e^-5	0.389	INTRON Best1	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_zfh1
X	5326806	X_5326806_SNP [dm3] X_5432773_SNP [dm6]	G	T	7.893e^-5	0.389	UPSTREAM CR44471 DOWNSTREAM CG15784 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	12224938	2L_12224938_SNP [dm3] 2L_12224938_SNP [dm6]	G	C	7.896e^-5	0.389	INTRON aret
3R	5767756	3R_5767756_SNP [dm3] 3R_9942034_SNP [dm6]	C	T	7.901e^-5	0.389	INTRON Glut4EF	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5012290	3R_5012290_SNP [dm3] 3R_9186568_SNP [dm6]	T	C	7.907e^-5	0.389	INTRON pum
2R	12326123	2R_12326123_SNP [dm3] 2R_16438618_SNP [dm6]	T	A	7.911e^-5	0.389	INTERGENIC
2L	8888819	2L_8888819_SNP [dm3] 2L_8888819_SNP [dm6]	C	T	7.930e^-5	0.389	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	10873468	2L_10873468_SNP [dm3] 2L_10873468_SNP [dm6]	A	T	8.010e^-5	0.392	INTERGENIC
X	17746469	X_17746469_SNP [dm3] X_17852436_SNP [dm6]	C	T	8.040e^-5	0.392	NON_SYNONYMOUS_CODING CG32554 DOWNSTREAM CG6506 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	8888773	2L_8888773_SNP [dm3] 2L_8888773_SNP [dm6]	C	A	8.135e^-5	0.392	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3L	10101405	3L_10101405_SNP [dm3] 3L_10108305_SNP [dm6]	G	A	8.144e^-5	0.392	INTRON dpr6
X	8928137	X_8928137_SNP [dm3] X_9034104_SNP [dm6]	C	A	8.205e^-5	0.392	INTRON CR43836 & 1 other
X	6275747	X_6275747_SNP [dm3] X_6381714_SNP [dm6]	T	C	8.209e^-5	0.392	INTERGENIC
2L	12125882	2L_12125882_SNP [dm3] 2L_12125882_SNP [dm6]	G	A	8.217e^-5	0.392	SYNONYMOUS_CODING CG17211
X	4596639	X_4596639_SNP [dm3] X_4702606_SNP [dm6]	T	A	8.229e^-5	0.392	UTR_5_PRIME l_1_G0334 DOWNSTREAM ctp INTRON l_1_G0334	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5785734	3L_5785734_SNP [dm3] 3L_5792634_SNP [dm6]	A	C	8.236e^-5	0.392	INTRON Bre1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21285892	3R_21285892_SNP [dm3] 3R_25460170_SNP [dm6]	T	C	8.246e^-5	0.392	INTRON Fur1
2R	11949172	2R_11949172_SNP [dm3] 2R_16061667_SNP [dm6]	C	T	8.252e^-5	0.392	DOWNSTREAM CG8405 INTERGENIC
2L	19824457	2L_19824457_DEL [dm3] 2L_19824457_DEL [dm6]	TGGCCAAGAATTTACTGAAT...	T	8.253e^-5	0.392	INTRON sick
3L	11622036	3L_11622036_SNP [dm3] 3L_11628936_SNP [dm6]	C	G	8.272e^-5	0.392	UPSTREAM mir-3642 INTRON CG18815	TF binding site mE1_TFBS_chinmo
2L	9501777	2L_9501777_SNP [dm3] 2L_9501777_SNP [dm6]	C	T	8.285e^-5	0.392	INTRON CG33298
2R	15087164	2R_15087164_SNP [dm3] 2R_19199659_SNP [dm6]	C	A	8.341e^-5	0.394	INTRON hppy
2L	5971137	2L_5971137_SNP [dm3] 2L_5971137_SNP [dm6]	T	G	8.358e^-5	0.394	UPSTREAM CR43465 DOWNSTREAM Ucp4B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11354328	2R_11354328_SNP [dm3] 2R_15466823_SNP [dm6]	C	T	8.393e^-5	0.395	INTRON CG43729
3L	22955679	3L_22955679_SNP [dm3] 3L_22962579_SNP [dm6]	A	C	8.548e^-5	0.4	DOWNSTREAM CR45758 INTERGENIC
X	17750806	X_17750806_SNP [dm3] X_17856773_SNP [dm6]	G	C	8.569e^-5	0.4	UPSTREAM CG6762 & 1 other DOWNSTREAM CR43981 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	4455745	2L_4455745_SNP [dm3] 2L_4455745_SNP [dm6]	C	G	8.580e^-5	0.4	DOWNSTREAM CG15434 INTRON Gs1l	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12123926	2L_12123926_SNP [dm3] 2L_12123926_SNP [dm6]	C	T	8.589e^-5	0.4	INTRON CG17211
3L	21357876	3L_21357876_SNP [dm3] 3L_21364776_SNP [dm6]	G	T	8.687e^-5	0.403	INTERGENIC
3L	11619097	3L_11619097_SNP [dm3] 3L_11625997_SNP [dm6]	T	A	8.750e^-5	0.405	UTR_5_PRIME CG6083 UPSTREAM PCID2	TF binding site BDTNP1_TFBS_dl
X	11059846	X_11059846_MNP [dm3] X_11165813_MNP [dm6]	CAA	GCC	8.766e^-5	0.405	INTERGENIC
3L	11625248	3L_11625248_SNP [dm3] 3L_11632148_SNP [dm6]	A	C	8.836e^-5	0.406	DOWNSTREAM CR45158 INTRON CG32091
3R	5140182	3R_5140182_SNP [dm3] 3R_9314460_SNP [dm6]	G	T	8.889e^-5	0.406	INTRON CG8861
X	15479466	X_15479466_SNP [dm3] X_15585433_SNP [dm6]	A	G	8.913e^-5	0.406	UTR_3_PRIME CG9220 DOWNSTREAM CG8097
2L	4701608	2L_4701608_SNP [dm3] 2L_4701608_SNP [dm6]	C	A	8.917e^-5	0.406	UPSTREAM Taf12L INTRON CG34351
2L	8885276	2L_8885276_SNP [dm3] 2L_8885276_SNP [dm6]	T	G	8.923e^-5	0.406	INTERGENIC
2L	3063669	2L_3063669_SNP [dm3] 2L_3063669_SNP [dm6]	T	C	8.985e^-5	0.406	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6021648	3R_6021648_SNP [dm3] 3R_10195926_SNP [dm6]	C	T	8.989e^-5	0.406	SYNONYMOUS_CODING Syn
3L	13715538	3L_13715538_SNP [dm3] 3L_13722438_SNP [dm6]	A	G	9.037e^-5	0.406	INTRON bru-3
2L	8888805	2L_8888805_SNP [dm3] 2L_8888805_SNP [dm6]	G	A	9.087e^-5	0.406	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3L	5237049	3L_5237049_SNP [dm3] 3L_5243949_SNP [dm6]	A	G	9.112e^-5	0.406	INTRON shep
X	8244495	X_8244495_SNP [dm3] X_8350462_SNP [dm6]	G	A	9.113e^-5	0.406	INTRON nAChRalpha3
3L	16336776	3L_16336776_SNP [dm3] 3L_16343676_SNP [dm6]	A	T	9.127e^-5	0.406	INTRON CG4998	TF binding site mE1_TFBS_cad
2L	8888789	2L_8888789_SNP [dm3] 2L_8888789_SNP [dm6]	A	G	9.215e^-5	0.406	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3L	1408005	3L_1408005_SNP [dm3] 3L_1408005_SNP [dm6]	A	G	9.220e^-5	0.406	INTRON Ptp61F
2R	12413382	2R_12413382_SNP [dm3] 2R_16525877_SNP [dm6]	G	A	9.220e^-5	0.406	INTRON Sema-2a
3L	14062861	3L_14062861_SNP [dm3] 3L_14069761_SNP [dm6]	C	T	9.243e^-5	0.406	INTRON CG32138
3R	6097815	3R_6097815_SNP [dm3] 3R_10272093_SNP [dm6]	T	A	9.264e^-5	0.406	INTRON CG43143
2L	5971104	2L_5971104_SNP [dm3] 2L_5971104_SNP [dm6]	G	C	9.270e^-5	0.406	UPSTREAM CR43465 DOWNSTREAM Ucp4B INTERGENIC	TF binding site mE1_TFBS_cad
3R	6365434	3R_6365434_SNP [dm3] 3R_10539712_SNP [dm6]	G	A	9.293e^-5	0.406	INTRON hth	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1408011	3L_1408011_SNP [dm3] 3L_1408011_SNP [dm6]	G	A	9.308e^-5	0.406	INTRON Ptp61F
X	16129102	X_16129102_SNP [dm3] X_16235069_SNP [dm6]	G	A	9.320e^-5	0.406	INTERGENIC
3R	6464338	3R_6464338_SNP [dm3] 3R_10638616_SNP [dm6]	A	G	9.358e^-5	0.406	UPSTREAM CR44018 INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	11417295	2R_11417295_SNP [dm3] 2R_15529790_SNP [dm6]	G	A	9.375e^-5	0.406	INTRON Khc-73	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5590590	X_5590590_SNP [dm3] X_5696557_SNP [dm6]	T	G	9.386e^-5	0.406	UPSTREAM CR42794 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	12645135	3R_12645135_SNP [dm3] 3R_16819413_SNP [dm6]	T	A	9.392e^-5	0.406	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	12753624	X_12753624_SNP [dm3] X_12859591_SNP [dm6]	G	A	9.401e^-5	0.406	INTRON Pde9
3L	1692955	3L_1692955_SNP [dm3] 3L_1692955_SNP [dm6]	A	T	9.418e^-5	0.406	INTRON CG7991
3L	2680681	3L_2680681_SNP [dm3] 3L_2680681_SNP [dm6]	C	G	9.492e^-5	0.406	INTRON Fife
2L	13227367	2L_13227367_SNP [dm3] 2L_13227367_SNP [dm6]	C	T	9.509e^-5	0.406	UPSTREAM CG16813 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	11063218	2L_11063218_SNP [dm3] 2L_11063218_SNP [dm6]	T	A	9.539e^-5	0.406	INTRON Samuel
3R	5860535	3R_5860535_SNP [dm3] 3R_10034813_SNP [dm6]	C	T	9.548e^-5	0.406	INTRON Mical	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	15747001	X_15747001_DEL [dm3] X_15852968_DEL [dm6]	TT	T	9.559e^-5	0.406	UPSTREAM CG15914 INTRON UBL3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	4978414	3R_4978414_SNP [dm3] 3R_9152692_SNP [dm6]	C	T	9.650e^-5	0.406	INTRON pum
2L	5971096	2L_5971096_SNP [dm3] 2L_5971096_SNP [dm6]	A	G	9.658e^-5	0.406	UPSTREAM CR43465 DOWNSTREAM Ucp4B INTERGENIC	TF binding site mE1_TFBS_cad
2R	6811196	2R_6811196_SNP [dm3] 2R_10923691_SNP [dm6]	A	C	9.669e^-5	0.406	INTERGENIC
2L	8881808	2L_8881808_SNP [dm3] 2L_8881808_SNP [dm6]	G	A	9.670e^-5	0.406	INTERGENIC
2L	13331706	2L_13331706_SNP [dm3] 2L_13331706_SNP [dm6]	C	A	9.681e^-5	0.406	UPSTREAM CG43778 INTERGENIC
3R	20281789	3R_20281789_SNP [dm3] 3R_24456067_SNP [dm6]	C	T	9.683e^-5	0.406	INTRON nAChRalpha1
2L	2763147	2L_2763147_SNP [dm3] 2L_2763147_SNP [dm6]	G	A	9.694e^-5	0.406	DOWNSTREAM CG3077 INTRON Trn-SR
3L	20718834	3L_20718834_SNP [dm3] 3L_20725734_SNP [dm6]	A	T	9.699e^-5	0.406	INTERGENIC
3R	12677977	3R_12677977_SNP [dm3] 3R_16852255_SNP [dm6]	A	C	9.701e^-5	0.406	INTRON iab-8 & 1 other EXON iab-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6549404	3R_6549404_SNP [dm3] 3R_10723682_SNP [dm6]	A	G	9.740e^-5	0.406	INTERGENIC
2L	11530310	2L_11530310_SNP [dm3] 2L_11530310_SNP [dm6]	C	A	9.742e^-5	0.406	INTRON CG31706
2L	8888767	2L_8888767_SNP [dm3] 2L_8888767_SNP [dm6]	A	G	9.743e^-5	0.406	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
X	10441028	X_10441028_SNP [dm3] X_10546995_SNP [dm6]	A	G	9.764e^-5	0.406	UPSTREAM spri INTRON spri	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	21520570	3L_21520570_SNP [dm3] 3L_21527470_SNP [dm6]	C	T	9.853e^-5	0.407	SYNONYMOUS_CODING CG7611 DOWNSTREAM CG32442
X	17173341	X_17173341_SNP [dm3] X_17279308_SNP [dm6]	A	G	9.871e^-5	0.407	SYNONYMOUS_CODING f	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	7748972	X_7748972_SNP [dm3] X_7854939_SNP [dm6]	C	T	9.893e^-5	0.407	UPSTREAM CG10920 INTERGENIC
X	10938828	X_10938828_SNP [dm3] X_11044795_SNP [dm6]	G	A	9.907e^-5	0.407	UTR_5_PRIME CG11160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14269380	3R_14269380_SNP [dm3] 3R_18443658_SNP [dm6]	A	C	9.908e^-5	0.407	INTRON fru
X	15757377	X_15757377_DEL [dm3] X_15863344_DEL [dm6]	CC	C	9.925e^-5	0.407	UTR_3_PRIME Gbeta13F DOWNSTREAM Gbeta13F
3L	3563634	3L_3563634_INS [dm3] 3L_3563634_INS [dm6]	C	CAC	9.938e^-5	0.407	INTRON Eip63E
2L	10138054	2L_10138054_SNP [dm3] 2L_10138054_SNP [dm6]	T	C	9.979e^-5	0.407	INTRON CG44153
2L	5927213	2L_5927213_SNP [dm3] 2L_5927213_SNP [dm6]	A	G	9.992e^-5	0.407	INTRON dsf
X	10451769	X_10451769_SNP [dm3] X_10557736_SNP [dm6]	A	C	1.005e^-4	0.409	UPSTREAM spri INTRON spri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17295665	2R_17295665_SNP [dm3] 2R_21408160_SNP [dm6]	G	C	1.012e^-4	0.411	INTRON Sdc
2L	12538065	2L_12538065_SNP [dm3] 2L_12538065_SNP [dm6]	G	A	1.016e^-4	0.411	SYNONYMOUS_CODING bun	TF binding site mE1_TFBS_chinmo
2L	8885676	2L_8885676_SNP [dm3] 2L_8885676_SNP [dm6]	C	T	1.018e^-4	0.411	INTERGENIC
2L	879628	2L_879628_SNP [dm3] 2L_879628_SNP [dm6]	G	A	1.023e^-4	0.413	NON_SYNONYMOUS_CODING CG15824	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	16914213	X_16914213_SNP [dm3] X_17020180_SNP [dm6]	G	C	1.028e^-4	0.414	INTRON CG45002
2L	4503838	2L_4503838_SNP [dm3] 2L_4503838_SNP [dm6]	A	G	1.037e^-4	0.415	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9581563	3L_9581563_SNP [dm3] 3L_9588463_SNP [dm6]	T	C	1.038e^-4	0.415	INTRON CG42673
2R	12668472	2R_12668472_SNP [dm3] 2R_16780967_SNP [dm6]	T	C	1.042e^-4	0.415	SYNONYMOUS_CODING resilin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	16707826	X_16707826_SNP [dm3] X_16813793_SNP [dm6]	T	C	1.046e^-4	0.415	INTRON CG4829
2L	8889235	2L_8889235_INS [dm3] 2L_8889235_INS [dm6]	G	GAAATGTACTTTATGT...	1.048e^-4	0.415	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
3L	5237965	3L_5237965_SNP [dm3] 3L_5244865_SNP [dm6]	G	A	1.055e^-4	0.415	INTRON shep
2L	13331698	2L_13331698_SNP [dm3] 2L_13331698_SNP [dm6]	T	C	1.057e^-4	0.415	UPSTREAM CG43778 INTERGENIC
2L	8889085	2L_8889085_SNP [dm3] 2L_8889085_SNP [dm6]	C	T	1.062e^-4	0.415	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
2L	2727365	2L_2727365_SNP [dm3] 2L_2727365_SNP [dm6]	G	A	1.065e^-4	0.415	INTRON CG31689
X	10449782	X_10449782_SNP [dm3] X_10555749_SNP [dm6]	T	C	1.065e^-4	0.415	UTR_5_PRIME spri UPSTREAM spri INTRON spri
2L	4610391	2L_4610391_SNP [dm3] 2L_4610391_SNP [dm6]	T	C	1.075e^-4	0.415	INTRON dp	TF binding site mE1_TFBS_HSA
X	18353272	X_18353272_SNP [dm3] X_18459239_SNP [dm6]	C	G	1.077e^-4	0.415	UTR_3_PRIME CG43843 INTRON CG32547
2L	9302232	2L_9302232_SNP [dm3] 2L_9302232_SNP [dm6]	C	G	1.081e^-4	0.415	UTR_3_PRIME Ggamma30A
2L	12126989	2L_12126989_SNP [dm3] 2L_12126989_SNP [dm6]	C	T	1.081e^-4	0.415	NON_SYNONYMOUS_CODING CG17211
3L	3320078	3L_3320078_SNP [dm3] 3L_3320078_SNP [dm6]	C	T	1.083e^-4	0.415	UPSTREAM PIG-C & 1 other INTRON CG12016 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
X	9381908	X_9381908_SNP [dm3] X_9487875_SNP [dm6]	A	G	1.083e^-4	0.415	INTRON mgl
X	16114871	X_16114871_SNP [dm3] X_16220838_SNP [dm6]	T	A	1.083e^-4	0.415	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	14254056	2L_14254056_SNP [dm3] 2L_14254056_SNP [dm6]	G	T	1.087e^-4	0.415	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	16509209	3L_16509209_DEL [dm3] 3L_16516109_DEL [dm6]	TT	A	1.090e^-4	0.415	INTRON CG43373
2R	11618564	2R_11618564_SNP [dm3] 2R_15731059_SNP [dm6]	T	C	1.093e^-4	0.415	INTRON CG30089
3R	20494796	3R_20494796_SNP [dm3] 3R_24669074_SNP [dm6]	T	C	1.093e^-4	0.415	INTRON slo	regulatory region REDfly_CRMs
X	8927741	X_8927741_DEL [dm3] X_9033708_DEL [dm6]	CCA	C	1.094e^-4	0.415	INTRON CR43836 & 1 other
2L	5501570	2L_5501570_SNP [dm3] 2L_5501570_SNP [dm6]	G	T	1.095e^-4	0.415	INTERGENIC	TF binding site mE1_TFBS_cad
3L	3283459	3L_3283459_SNP [dm3] 3L_3283459_SNP [dm6]	C	G	1.102e^-4	0.415	INTRON CG12017
3L	18823278	3L_18823278_SNP [dm3] 3L_18830178_SNP [dm6]	A	C	1.107e^-4	0.415	INTRON Indy	TF binding site mE1_TFBS_inv
3R	1112754	3R_1112754_SNP [dm3] 3R_5287032_SNP [dm6]	A	G	1.109e^-4	0.415	UTR_5_PRIME mtd INTRON mtd
2L	14392297	2L_14392297_SNP [dm3] 2L_14392297_SNP [dm6]	A	G	1.109e^-4	0.415	SYNONYMOUS_CODING elB	TF binding site mE1_TFBS_chinmo
2R	5874703	2R_5874703_SNP [dm3] 2R_9987198_SNP [dm6]	C	T	1.114e^-4	0.415	DOWNSTREAM CR45324 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	15348277	2L_15348277_SNP [dm3] 2L_15348277_SNP [dm6]	G	C	1.114e^-4	0.415	INTERGENIC
3L	5237973	3L_5237973_SNP [dm3] 3L_5244873_SNP [dm6]	G	A	1.115e^-4	0.415	INTRON shep
3L	1206795	3L_1206795_SNP [dm3] 3L_1206795_SNP [dm6]	G	A	1.118e^-4	0.415	UPSTREAM LysB INTRON mwh	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	20137247	2R_20137247_SNP [dm3] 2R_24249724_SNP [dm6]	G	A	1.121e^-4	0.415	SYNONYMOUS_CODING Ir60a INTRON nord	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16914315	X_16914315_SNP [dm3] X_17020282_SNP [dm6]	T	C	1.121e^-4	0.415	INTRON CG45002
2R	8687643	2R_8687643_SNP [dm3] 2R_12800138_SNP [dm6]	T	C	1.122e^-4	0.415	SYNONYMOUS_CODING sca UPSTREAM CR45137	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10853125	2L_10853125_SNP [dm3] 2L_10853125_SNP [dm6]	G	A	1.126e^-4	0.415	SYNONYMOUS_CODING CG43129	TF binding site mE1_TFBS_chinmo
2L	14276877	2L_14276877_SNP [dm3] 2L_14276877_SNP [dm6]	A	T	1.131e^-4	0.415	UPSTREAM CG32971 INTRON wb & 1 other
2L	11049137	2L_11049137_SNP [dm3] 2L_11049137_SNP [dm6]	T	A	1.134e^-4	0.415	INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	10504088	3R_10504088_SNP [dm3] 3R_14678366_SNP [dm6]	C	T	1.135e^-4	0.415	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	17496682	X_17496682_SNP [dm3] X_17602649_SNP [dm6]	G	T	1.136e^-4	0.415	SYNONYMOUS_CODING X11L
3L	2538241	3L_2538241_SNP [dm3] 3L_2538241_SNP [dm6]	G	A	1.136e^-4	0.415	INTRON Spn
2L	3612418	2L_3612418_SNP [dm3] 2L_3612418_SNP [dm6]	A	T	1.137e^-4	0.415	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11730522	X_11730522_SNP [dm3] X_11836489_SNP [dm6]	C	G	1.140e^-4	0.415	UTR_3_PRIME rudhira DOWNSTREAM rudhira
3R	6011163	3R_6011163_SNP [dm3] 3R_10185441_SNP [dm6]	C	T	1.141e^-4	0.415	INTRON CG12814
2L	8885531	2L_8885531_SNP [dm3] 2L_8885531_SNP [dm6]	T	C	1.141e^-4	0.415	INTERGENIC
X	6797525	X_6797525_SNP [dm3] X_6903492_SNP [dm6]	C	A	1.141e^-4	0.415	INTERGENIC
3R	6499347	3R_6499347_SNP [dm3] 3R_10673625_SNP [dm6]	A	G	1.142e^-4	0.415	INTERGENIC
2L	9630053	2L_9630053_SNP [dm3] 2L_9630053_SNP [dm6]	T	A	1.142e^-4	0.415	INTERGENIC
2R	11618541	2R_11618541_SNP [dm3] 2R_15731036_SNP [dm6]	T	G	1.142e^-4	0.415	INTRON CG30089	TF binding site mE1_TFBS_HSA
3L	14161900	3L_14161900_SNP [dm3] 3L_14168800_SNP [dm6]	A	T	1.142e^-4	0.415	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	5327119	X_5327119_SNP [dm3] X_5433086_SNP [dm6]	G	T	1.146e^-4	0.415	UPSTREAM CR44471 DOWNSTREAM CG15784 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	12129823	2L_12129823_INS [dm3] 2L_12129823_INS [dm6]	T	TTAATTAAGCC...	1.147e^-4	0.415	UTR_3_PRIME CG17211 DOWNSTREAM rho-6
2L	8916174	2L_8916174_SNP [dm3] 2L_8916174_SNP [dm6]	A	T	1.149e^-4	0.415	INTRON CG34398
3R	6481606	3R_6481606_SNP [dm3] 3R_10655884_SNP [dm6]	T	G	1.154e^-4	0.415	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	15337302	2L_15337302_SNP [dm3] 2L_15337302_SNP [dm6]	G	C	1.155e^-4	0.415	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12202248	2L_12202248_INS [dm3] 2L_12202248_INS [dm6]	A	TCTT	1.159e^-4	0.415	INTRON aret
3R	6387825	3R_6387825_SNP [dm3] 3R_10562103_SNP [dm6]	G	C	1.160e^-4	0.415	INTRON hth
3L	1269972	3L_1269972_SNP [dm3] 3L_1269972_SNP [dm6]	C	T	1.162e^-4	0.415	INTRON CG9134
2L	7995624	2L_7995624_SNP [dm3] 2L_7995624_SNP [dm6]	G	A	1.169e^-4	0.415	SYNONYMOUS_CODING CG7227 EXON CR44996	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	16114866	X_16114866_SNP [dm3] X_16220833_SNP [dm6]	T	G	1.170e^-4	0.415	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	17632688	2L_17632688_SNP [dm3] 2L_17632688_SNP [dm6]	C	T	1.171e^-4	0.415	INTERGENIC
2L	8881653	2L_8881653_SNP [dm3] 2L_8881653_SNP [dm6]	G	A	1.171e^-4	0.415	INTERGENIC	TF binding site mE1_TFBS_cnc
2R	13794746	2R_13794746_SNP [dm3] 2R_17907241_SNP [dm6]	A	T	1.172e^-4	0.415	INTRON Elk
2R	9955563	2R_9955563_SNP [dm3] 2R_14068058_SNP [dm6]	G	C	1.173e^-4	0.415	INTRON Prosap
2R	17064435	2R_17064435_SNP [dm3] 2R_21176930_SNP [dm6]	A	T	1.174e^-4	0.415	DOWNSTREAM CG4286 INTRON Pu
2L	5129418	2L_5129418_SNP [dm3] 2L_5129418_SNP [dm6]	C	T	1.177e^-4	0.415	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	10901147	X_10901147_SNP [dm3] X_11007114_SNP [dm6]	C	G	1.177e^-4	0.415	INTRON CG42339
2L	8889135	2L_8889135_SNP [dm3] 2L_8889135_SNP [dm6]	A	G	1.182e^-4	0.416	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
X	18160684	X_18160684_SNP [dm3] X_18266651_SNP [dm6]	A	G	1.191e^-4	0.416	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8312177	2L_8312177_SNP [dm3] 2L_8312177_SNP [dm6]	C	A	1.193e^-4	0.416	UPSTREAM CG7810 INTRON CG7806
2R	11413423	2R_11413423_SNP [dm3] 2R_15525918_SNP [dm6]	C	T	1.200e^-4	0.416	SYNONYMOUS_CODING Khc-73	TF binding site mE1_TFBS_cad
2L	11024375	2L_11024375_SNP [dm3] 2L_11024375_SNP [dm6]	A	T	1.202e^-4	0.416	INTRON Samuel	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10873626	2L_10873626_SNP [dm3] 2L_10873626_SNP [dm6]	T	A	1.202e^-4	0.416	INTERGENIC
3R	5012291	3R_5012291_SNP [dm3] 3R_9186569_SNP [dm6]	T	C	1.206e^-4	0.416	INTRON pum
3L	1487530	3L_1487530_SNP [dm3] 3L_1487530_SNP [dm6]	C	T	1.211e^-4	0.416	INTRON stet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	9478671	2R_9478671_SNP [dm3] 2R_13591166_SNP [dm6]	T	C	1.212e^-4	0.416	SYNONYMOUS_CODING CG6191 UTR_3_PRIME CG45088	TF binding site BDTNP1_TFBS_sna
3L	11224081	3L_11224081_DEL [dm3] 3L_11230981_DEL [dm6]	AATCTTAAA	A	1.212e^-4	0.416	DOWNSTREAM CR45405 & 1 other INTERGENIC
2L	8098240	2L_8098240_SNP [dm3] 2L_8098240_SNP [dm6]	A	G	1.214e^-4	0.416	INTRON Bsg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	14723484	3R_14723484_SNP [dm3] 3R_18897762_SNP [dm6]	G	A	1.214e^-4	0.416	UPSTREAM CG14297 INTERGENIC
3L	8330055	3L_8330055_SNP [dm3] 3L_8336955_SNP [dm6]	A	G	1.218e^-4	0.416	INTRON Cpr66Cb
3L	14062834	3L_14062834_DEL [dm3] 3L_14069734_DEL [dm6]	AT	C	1.219e^-4	0.416	INTRON CG32138
3L	8798464	3L_8798464_SNP [dm3] 3L_8805364_SNP [dm6]	A	G	1.220e^-4	0.416	SYNONYMOUS_CODING CG34427 DOWNSTREAM CG13312	TF binding site mE1_TFBS_chinmo
2L	5955752	2L_5955752_SNP [dm3] 2L_5955752_SNP [dm6]	A	T	1.224e^-4	0.416	DOWNSTREAM CG9044 & 1 other INTRON CG13999
3L	3423124	3L_3423124_SNP [dm3] 3L_3423124_SNP [dm6]	A	T	1.225e^-4	0.416	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	3680735	2L_3680735_SNP [dm3] 2L_3680735_SNP [dm6]	A	G	1.226e^-4	0.416	INTRON CG34340
2R	18164657	2R_18164657_SNP [dm3] 2R_22277152_SNP [dm6]	T	A	1.226e^-4	0.416	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12123382	2L_12123382_SNP [dm3] 2L_12123382_SNP [dm6]	A	G	1.227e^-4	0.416	INTRON CG17211
3L	14647532	3L_14647532_SNP [dm3] 3L_14654432_SNP [dm6]	A	T	1.228e^-4	0.416	INTRON dlp
2R	5315792	2R_5315792_SNP [dm3] 2R_9428287_SNP [dm6]	G	T	1.231e^-4	0.417	INTRON Pdk
3L	10000505	3L_10000505_SNP [dm3] 3L_10007405_SNP [dm6]	G	A	1.237e^-4	0.417	INTRON dpr6
X	12332193	X_12332193_SNP [dm3] X_12438160_SNP [dm6]	C	A	1.238e^-4	0.417	INTRON Pkcdelta
2L	12523617	2L_12523617_SNP [dm3] 2L_12523617_SNP [dm6]	C	T	1.240e^-4	0.417	INTRON bun
2L	3537755	2L_3537755_SNP [dm3] 2L_3537755_SNP [dm6]	T	C	1.241e^-4	0.417	UPSTREAM CR44308 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	836796	2L_836796_SNP [dm3] 2L_836796_SNP [dm6]	A	T	1.242e^-4	0.417	SYNONYMOUS_CODING drongo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18147255	X_18147255_SNP [dm3] X_18253222_SNP [dm6]	G	A	1.245e^-4	0.417	INTERGENIC
3L	7627092	3L_7627092_SNP [dm3] 3L_7633992_SNP [dm6]	C	T	1.263e^-4	0.422	INTRON CG33275
2R	12715945	2R_12715945_SNP [dm3] 2R_16828440_SNP [dm6]	T	C	1.265e^-4	0.422	UPSTREAM CR43650 DOWNSTREAM CG34460 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	9104148	3L_9104148_SNP [dm3] 3L_9111048_SNP [dm6]	G	A	1.267e^-4	0.422	INTRON bol
3R	5424509	3R_5424509_SNP [dm3] 3R_9598787_SNP [dm6]	T	A	1.270e^-4	0.422	INTRON CG8312	TF binding site BDTNP1_TFBS_hb
2L	14489538	2L_14489538_SNP [dm3] 2L_14489538_SNP [dm6]	G	A	1.270e^-4	0.422	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2851344	3L_2851344_SNP [dm3] 3L_2851344_SNP [dm6]	G	A	1.282e^-4	0.425	INTRON CG43444	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	10147779	2L_10147779_SNP [dm3] 2L_10147779_SNP [dm6]	G	A	1.286e^-4	0.425	INTRON CG44153 & 1 other	TF binding site mE1_TFBS_cad
2L	7151680	2L_7151680_SNP [dm3] 2L_7151680_SNP [dm6]	G	A	1.298e^-4	0.425	INTRON Pvf3
2L	10013526	2L_10013526_SNP [dm3] 2L_10013526_SNP [dm6]	T	C	1.301e^-4	0.425	SYNONYMOUS_CODING CG13131 DOWNSTREAM Trp1
X	4982607	X_4982607_SNP [dm3] X_5088574_SNP [dm6]	G	A	1.302e^-4	0.425	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18908813	X_18908813_SNP [dm3] X_19014780_SNP [dm6]	A	C	1.305e^-4	0.425	INTRON CG43759	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8195603	2L_8195603_SNP [dm3] 2L_8195603_SNP [dm6]	C	T	1.308e^-4	0.425	INTRON CG8475 EXON CR44116	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10006718	3L_10006718_SNP [dm3] 3L_10013618_SNP [dm6]	C	T	1.309e^-4	0.425	INTRON dpr6	TF binding site mE1_TFBS_HSA
X	12917557	X_12917557_SNP [dm3] X_13023524_SNP [dm6]	G	T	1.310e^-4	0.425	DOWNSTREAM CG2209 INTRON rad
2L	15303323	2L_15303323_SNP [dm3] 2L_15303323_SNP [dm6]	A	G	1.311e^-4	0.425	INTERGENIC
2R	17643902	2R_17643902_DEL [dm3] 2R_21756397_DEL [dm6]	GG	G	1.313e^-4	0.425	UPSTREAM Grx-1 INTERGENIC
X	5412729	X_5412729_SNP [dm3] X_5518696_SNP [dm6]	C	T	1.317e^-4	0.425	UTR_3_PRIME CG12730	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	19366232	2R_19366232_SNP [dm3] 2R_23478709_SNP [dm6]	T	G	1.319e^-4	0.425	INTRON CG43795
X	14394066	X_14394066_SNP [dm3] X_14500033_SNP [dm6]	C	T	1.322e^-4	0.425	INTERGENIC
2L	912495	2L_912495_SNP [dm3] 2L_912495_SNP [dm6]	A	G	1.324e^-4	0.425	DOWNSTREAM CR44061 INTERGENIC
2L	12128708	2L_12128708_SNP [dm3] 2L_12128708_SNP [dm6]	C	G	1.332e^-4	0.425	NON_SYNONYMOUS_CODING CG17211	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14693019	X_14693019_SNP [dm3] X_14798986_SNP [dm6]	G	A	1.332e^-4	0.425	SYNONYMOUS_CODING rut	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2990384	3L_2990384_SNP [dm3] 3L_2990384_SNP [dm6]	C	G	1.333e^-4	0.425	INTERGENIC
3L	7628011	3L_7628011_SNP [dm3] 3L_7634911_SNP [dm6]	A	G	1.333e^-4	0.425	INTRON CG33275	TF binding site mE1_TFBS_HSA
3R	17806337	3R_17806337_SNP [dm3] 3R_21980615_SNP [dm6]	A	G	1.336e^-4	0.425	INTRON Eip93F
2R	14060476	2R_14060476_SNP [dm3] 2R_18172971_SNP [dm6]	T	C	1.336e^-4	0.425	UPSTREAM CR45315 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11618547	2R_11618547_SNP [dm3] 2R_15731042_SNP [dm6]	T	C	1.344e^-4	0.425	INTRON CG30089	TF binding site mE1_TFBS_HSA
3L	7627057	3L_7627057_SNP [dm3] 3L_7633957_SNP [dm6]	A	G	1.344e^-4	0.425	INTRON CG33275
3L	7628058	3L_7628058_SNP [dm3] 3L_7634958_SNP [dm6]	C	T	1.344e^-4	0.425	INTRON CG33275	TF binding site mE1_TFBS_HSA
X	4596743	X_4596743_SNP [dm3] X_4702710_SNP [dm6]	A	G	1.345e^-4	0.425	NON_SYNONYMOUS_CODING l_1_G0334 UTR_5_PRIME l_1_G0334 DOWNSTREAM ctp INTRON l_1_G0334	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	7171754	3R_7171754_SNP [dm3] 3R_11346032_SNP [dm6]	A	G	1.346e^-4	0.425	DOWNSTREAM KP78a & 1 other INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12722117	X_12722117_SNP [dm3] X_12828084_SNP [dm6]	A	G	1.347e^-4	0.425	INTRON Pde9
2R	13564344	2R_13564344_SNP [dm3] 2R_17676839_SNP [dm6]	A	G	1.348e^-4	0.425	INTRON Sema-1b	TF binding site mE1_TFBS_cad
3L	8330183	3L_8330183_SNP [dm3] 3L_8337083_SNP [dm6]	A	C	1.351e^-4	0.425	INTRON Cpr66Cb
3R	14723482	3R_14723482_SNP [dm3] 3R_18897760_SNP [dm6]	G	A	1.352e^-4	0.425	UPSTREAM CG14297 INTERGENIC
2L	2718854	2L_2718854_SNP [dm3] 2L_2718854_SNP [dm6]	G	A	1.352e^-4	0.425	SYNONYMOUS_CODING CG31690	TF binding site mE1_TFBS_chinmo
3L	16334479	3L_16334479_SNP [dm3] 3L_16341379_SNP [dm6]	T	C	1.357e^-4	0.426	SYNONYMOUS_CODING CG4998	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10344841	X_10344841_SNP [dm3] X_10450808_SNP [dm6]	A	T	1.357e^-4	0.426	INTRON CG32683
X	9591086	X_9591086_SNP [dm3] X_9697053_SNP [dm6]	C	T	1.363e^-4	0.427	UTR_3_PRIME btd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8888817	2L_8888817_SNP [dm3] 2L_8888817_SNP [dm6]	C	A	1.370e^-4	0.428	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	15348137	2L_15348137_SNP [dm3] 2L_15348137_SNP [dm6]	T	C	1.372e^-4	0.428	INTERGENIC
2R	13803635	2R_13803635_SNP [dm3] 2R_17916130_SNP [dm6]	C	T	1.377e^-4	0.428	INTRON Elk
3L	2180916	3L_2180916_SNP [dm3] 3L_2180916_SNP [dm6]	C	G	1.379e^-4	0.428	INTERGENIC
3R	5996900	3R_5996900_SNP [dm3] 3R_10171178_SNP [dm6]	A	T	1.382e^-4	0.428	UTR_3_PRIME CG12814 UPSTREAM Best1	TF binding site mE1_TFBS_cad
3R	6005696	3R_6005696_SNP [dm3] 3R_10179974_SNP [dm6]	A	G	1.383e^-4	0.428	INTRON CG12814
2L	7063368	2L_7063368_SNP [dm3] 2L_7063368_SNP [dm6]	T	A	1.383e^-4	0.428	UTR_3_PRIME Mnn1 UPSTREAM Sem1 DOWNSTREAM Mnn1	TF binding site mE1_TFBS_cnc
2L	9298259	2L_9298259_SNP [dm3] 2L_9298259_SNP [dm6]	T	C	1.386e^-4	0.428	UTR_3_PRIME Ggamma30A
3R	6350003	3R_6350003_SNP [dm3] 3R_10524281_SNP [dm6]	C	T	1.390e^-4	0.428	INTRON hth
3R	15260872	3R_15260872_SNP [dm3] 3R_19435150_SNP [dm6]	T	C	1.391e^-4	0.428	INTRON CG31221
X	12850144	X_12850144_SNP [dm3] X_12956111_SNP [dm6]	C	G	1.392e^-4	0.428	INTRON hec	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3139659	3L_3139659_SNP [dm3] 3L_3139659_SNP [dm6]	G	A	1.395e^-4	0.428	INTRON CG11537	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3L	11225998	3L_11225998_SNP [dm3] 3L_11232898_SNP [dm6]	T	A	1.396e^-4	0.428	DOWNSTREAM Ir68a INTERGENIC
2R	20106920	2R_20106920_SNP [dm3] 2R_24219397_SNP [dm6]	C	A	1.400e^-4	0.428	INTRON CG30419
2L	8271519	2L_8271519_SNP [dm3] 2L_8271519_SNP [dm6]	T	G	1.415e^-4	0.429	INTRON Btk29A
2L	8226400	2L_8226400_SNP [dm3] 2L_8226400_SNP [dm6]	T	G	1.415e^-4	0.429	SPLICE_SITE_REGION Pvr INTRON Pvr
2R	12774489	2R_12774489_SNP [dm3] 2R_16886984_SNP [dm6]	C	T	1.415e^-4	0.429	INTRON CG8910
2L	7531736	2L_7531736_SNP [dm3] 2L_7531736_SNP [dm6]	T	C	1.417e^-4	0.429	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2162275	3L_2162275_SNP [dm3] 3L_2162275_SNP [dm6]	T	C	1.419e^-4	0.429	INTRON CG15822
3R	6014473	3R_6014473_SNP [dm3] 3R_10188751_SNP [dm6]	G	A	1.420e^-4	0.429	INTRON CG12814
2R	15087314	2R_15087314_SNP [dm3] 2R_19199809_SNP [dm6]	G	C	1.422e^-4	0.429	INTRON hppy
X	8018181	X_8018181_SNP [dm3] X_8124148_SNP [dm6]	G	A	1.425e^-4	0.429	INTRON cyr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2244601	X_2244601_SNP [dm3] X_2350568_SNP [dm6]	C	A	1.426e^-4	0.429	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
2L	3699580	2L_3699580_SNP [dm3] 2L_3699580_SNP [dm6]	C	A	1.428e^-4	0.429	UPSTREAM CG10031 & 1 other INTRON CG42464
X	5412727	X_5412727_SNP [dm3] X_5518694_SNP [dm6]	T	C	1.430e^-4	0.429	UTR_3_PRIME CG12730	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	2169087	X_2169087_SNP [dm3] X_2275054_SNP [dm6]	A	T	1.430e^-4	0.429	UTR_5_PRIME CG2918 UPSTREAM CG2918 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
2R	5638817	2R_5638817_INS [dm3] 2R_9751312_INS [dm6]	A	AT	1.436e^-4	0.429	INTERGENIC
3L	10289423	3L_10289423_SNP [dm3] 3L_10296323_SNP [dm6]	G	T	1.438e^-4	0.429	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3326817	3L_3326817_SNP [dm3] 3L_3326817_SNP [dm6]	T	A	1.438e^-4	0.429	UPSTREAM CG11526 INTRON CG11526 & 1 other	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	25882076	3R_25882076_SNP [dm3] 3R_30056354_SNP [dm6]	G	T	1.441e^-4	0.429	NON_SYNONYMOUS_CODING CG15526 UPSTREAM CG7950 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	16114869	X_16114869_SNP [dm3] X_16220836_SNP [dm6]	T	G	1.444e^-4	0.429	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	11056499	X_11056499_SNP [dm3] X_11162466_SNP [dm6]	T	C	1.445e^-4	0.429	INTRON Dlic
X	10452013	X_10452013_SNP [dm3] X_10557980_SNP [dm6]	A	C	1.451e^-4	0.429	UPSTREAM spri INTRON spri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	5392329	3R_5392329_SNP [dm3] 3R_9566607_SNP [dm6]	C	T	1.451e^-4	0.429	SYNONYMOUS_CODING CG16789 DOWNSTREAM Vps45	TF binding site mE1_TFBS_cad
3L	13249233	3L_13249233_SNP [dm3] 3L_13256133_SNP [dm6]	A	G	1.453e^-4	0.429	INTRON caps
2R	9609124	2R_9609124_SNP [dm3] 2R_13721619_SNP [dm6]	T	G	1.453e^-4	0.429	INTRON fas
2L	8889286	2L_8889286_SNP [dm3] 2L_8889286_SNP [dm6]	C	A	1.454e^-4	0.429	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
X	6797607	X_6797607_SNP [dm3] X_6903574_SNP [dm6]	C	T	1.457e^-4	0.429	INTERGENIC
2L	12227429	2L_12227429_SNP [dm3] 2L_12227429_SNP [dm6]	A	G	1.464e^-4	0.43	INTRON aret
X	11056469	X_11056469_SNP [dm3] X_11162436_SNP [dm6]	A	G	1.468e^-4	0.43	SYNONYMOUS_CODING Dlic
X	16114873	X_16114873_SNP [dm3] X_16220840_SNP [dm6]	T	A	1.468e^-4	0.43	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	9609131	2R_9609131_SNP [dm3] 2R_13721626_SNP [dm6]	G	A	1.472e^-4	0.431	INTRON fas
3R	842800	3R_842800_SNP [dm3] 3R_5017078_SNP [dm6]	C	G	1.474e^-4	0.431	INTRON CR45585	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14532717	2L_14532717_SNP [dm3] 2L_14532717_SNP [dm6]	A	T	1.486e^-4	0.433	EXON CR44852
3L	11224092	3L_11224092_INS [dm3] 3L_11230992_INS [dm6]	T	TATTATA	1.489e^-4	0.434	DOWNSTREAM CR45405 & 1 other INTERGENIC
2L	4899161	2L_4899161_SNP [dm3] 2L_4899161_SNP [dm6]	G	C	1.501e^-4	0.435	INTRON CG3036
X	13259722	X_13259722_SNP [dm3] X_13365689_SNP [dm6]	T	C	1.501e^-4	0.435	SYNONYMOUS_CODING Syt12	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1590954	3L_1590954_SNP [dm3] 3L_1590954_SNP [dm6]	C	T	1.502e^-4	0.435	INTRON CG13917
2L	13910683	2L_13910683_SNP [dm3] 2L_13910683_SNP [dm6]	G	A	1.505e^-4	0.436	INTRON Ance-2	TF binding site mE1_TFBS_cad
2L	14822665	2L_14822665_SNP [dm3] 2L_14822665_SNP [dm6]	C	T	1.513e^-4	0.436	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	11059884	X_11059884_SNP [dm3] X_11165851_SNP [dm6]	T	G	1.515e^-4	0.436	INTERGENIC
3R	5919522	3R_5919522_SNP [dm3] 3R_10093800_SNP [dm6]	T	C	1.518e^-4	0.436	EXON CR43459	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10091812	3L_10091812_SNP [dm3] 3L_10098712_SNP [dm6]	G	C	1.521e^-4	0.436	UPSTREAM CG42825 DOWNSTREAM CG42826 INTRON dpr6
3L	19439680	3L_19439680_SNP [dm3] 3L_19446580_SNP [dm6]	A	G	1.524e^-4	0.436	UPSTREAM Chd3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	969007	2R_969007_SNP [dm3] 2R_5081502_SNP [dm6]	C	G	1.526e^-4	0.436	DOWNSTREAM CR43360 INTERGENIC	transposable element FlyBase
3R	4439934	3R_4439934_SNP [dm3] 3R_8614212_SNP [dm6]	G	A	1.527e^-4	0.436	INTRON 5-HT2B	TF binding site mE1_TFBS_inv
2L	8889402	2L_8889402_SNP [dm3] 2L_8889402_SNP [dm6]	C	T	1.529e^-4	0.436	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens
3R	2210499	3R_2210499_SNP [dm3] 3R_6384777_SNP [dm6]	A	G	1.530e^-4	0.436	INTRON godzilla
3R	5919720	3R_5919720_SNP [dm3] 3R_10093998_SNP [dm6]	A	T	1.531e^-4	0.436	EXON CR43459	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	6275749	X_6275749_SNP [dm3] X_6381716_SNP [dm6]	C	T	1.536e^-4	0.437	INTERGENIC
3L	9605867	3L_9605867_SNP [dm3] 3L_9612767_SNP [dm6]	A	G	1.542e^-4	0.438	NON_SYNONYMOUS_CODING CG3280	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	615879	2L_615879_SNP [dm3] 2L_615879_SNP [dm6]	G	T	1.550e^-4	0.44	INTERGENIC
2L	9430211	2L_9430211_SNP [dm3] 2L_9430211_SNP [dm6]	A	G	1.553e^-4	0.44	SYNONYMOUS_CODING FucTB UPSTREAM FucTB	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18969906	3R_18969906_SNP [dm3] 3R_23144184_SNP [dm6]	G	T	1.567e^-4	0.443	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	5161996	3R_5161996_SNP [dm3] 3R_9336274_SNP [dm6]	T	A	1.568e^-4	0.443	INTRON CG8121
3R	27068247	3R_27068247_SNP [dm3] 3R_31242525_SNP [dm6]	A	C	1.572e^-4	0.443	INTRON qless
2L	10317475	2L_10317475_DEL [dm3] 2L_10317475_DEL [dm6]	AA	A	1.575e^-4	0.443	UTR_3_PRIME CG4972 DOWNSTREAM CG5381	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	10667307	2L_10667307_SNP [dm3] 2L_10667307_SNP [dm6]	G	C	1.575e^-4	0.443	INTRON CG31871
2L	7111176	2L_7111176_SNP [dm3] 2L_7111176_SNP [dm6]	G	T	1.578e^-4	0.443	INTRON Pvf3
2L	9127683	2L_9127683_SNP [dm3] 2L_9127683_SNP [dm6]	A	T	1.586e^-4	0.445	INTRON CG32982	TF binding site BDTNP1_TFBS_dl
3L	7628047	3L_7628047_SNP [dm3] 3L_7634947_SNP [dm6]	C	T	1.591e^-4	0.445	INTRON CG33275	TF binding site mE1_TFBS_HSA
X	12722153	X_12722153_SNP [dm3] X_12828120_SNP [dm6]	A	C	1.594e^-4	0.445	INTRON Pde9
3R	16069815	3R_16069815_SNP [dm3] 3R_20244093_SNP [dm6]	T	C	1.596e^-4	0.445	UTR_3_PRIME Nlg4	TF binding site BDTNP1_TFBS_sna
2L	8889091	2L_8889091_SNP [dm3] 2L_8889091_SNP [dm6]	T	C	1.600e^-4	0.446	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
2L	11033203	2L_11033203_SNP [dm3] 2L_11033203_SNP [dm6]	G	A	1.603e^-4	0.446	INTRON Samuel
X	18353219	X_18353219_SNP [dm3] X_18459186_SNP [dm6]	A	C	1.605e^-4	0.446	UTR_3_PRIME CG43843 INTRON CG32547
3L	3419361	3L_3419361_SNP [dm3] 3L_3419361_SNP [dm6]	T	G	1.618e^-4	0.448	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	13252009	3L_13252009_SNP [dm3] 3L_13258909_SNP [dm6]	A	C	1.624e^-4	0.448	INTRON caps
X	5366948	X_5366948_SNP [dm3] X_5472915_SNP [dm6]	A	T	1.626e^-4	0.448	INTRON SPR
3R	10530161	3R_10530161_DEL [dm3] 3R_14704439_DEL [dm6]	GTCTGTCTGTCTGTTGATTG...	G	1.631e^-4	0.448	INTRON kibra
X	7454686	X_7454686_SNP [dm3] X_7560653_SNP [dm6]	A	G	1.631e^-4	0.448	INTERGENIC
2L	6045128	2L_6045128_SNP [dm3] 2L_6045128_SNP [dm6]	G	A	1.636e^-4	0.448	SYNONYMOUS_CODING ade2 DOWNSTREAM mir-966	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	11062985	2L_11062985_SNP [dm3] 2L_11062985_SNP [dm6]	G	A	1.637e^-4	0.448	INTRON Samuel
2L	8880102	2L_8880102_SNP [dm3] 2L_8880102_SNP [dm6]	C	G	1.639e^-4	0.448	INTERGENIC
2L	8880103	2L_8880103_DEL [dm3] 2L_8880103_DEL [dm6]	GTCTAAGACTG...	G	1.639e^-4	0.448	INTERGENIC
2L	12128707	2L_12128707_SNP [dm3] 2L_12128707_SNP [dm6]	G	C	1.639e^-4	0.448	NON_SYNONYMOUS_CODING CG17211	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11556631	3L_11556631_INS [dm3] 3L_11563531_INS [dm6]	G	GTCCT	1.640e^-4	0.448	UTR_3_PRIME CG7394 UPSTREAM CG33267 DOWNSTREAM CG7394
2R	12774491	2R_12774491_INS [dm3] 2R_16886986_INS [dm6]	A	ATTCTGTATACTATAGACAC...	1.640e^-4	0.448	INTRON CG8910
3L	5238006	3L_5238006_SNP [dm3] 3L_5244906_SNP [dm6]	C	T	1.644e^-4	0.448	INTRON shep
2R	14653394	2R_14653394_INS [dm3] 2R_18765889_INS [dm6]	T	TT	1.646e^-4	0.448	INTRON Mctp
2L	8888984	2L_8888984_SNP [dm3] 2L_8888984_SNP [dm6]	A	C	1.647e^-4	0.448	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
3R	24107495	3R_24107495_SNP [dm3] 3R_28281773_SNP [dm6]	C	T	1.651e^-4	0.448	UPSTREAM CG34436 INTERGENIC
2R	8687542	2R_8687542_SNP [dm3] 2R_12800037_SNP [dm6]	G	C	1.659e^-4	0.449	NON_SYNONYMOUS_CODING sca UPSTREAM CR45137	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11594012	3R_11594012_MNP [dm3] 3R_15768290_MNP [dm6]	CAA	TTT	1.659e^-4	0.449	UPSTREAM CG5623 INTERGENIC
2R	5259336	2R_5259336_SNP [dm3] 2R_9371831_SNP [dm6]	A	G	1.664e^-4	0.45	INTRON CG13954	TF binding site mE1_TFBS_cad
X	6275713	X_6275713_SNP [dm3] X_6381680_SNP [dm6]	T	A	1.670e^-4	0.451	INTERGENIC
X	15255366	X_15255366_SNP [dm3] X_15361333_SNP [dm6]	A	G	1.675e^-4	0.451	UPSTREAM Pp1-13C INTRON acj6
2L	17380275	2L_17380275_SNP [dm3] 2L_17380275_SNP [dm6]	A	C	1.678e^-4	0.451	INTRON Lrch	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	6569010	2R_6569010_SNP [dm3] 2R_10681505_SNP [dm6]	T	C	1.680e^-4	0.451	INTRON stan	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	15695722	X_15695722_SNP [dm3] X_15801689_SNP [dm6]	G	A	1.686e^-4	0.451	SYNONYMOUS_CODING PGRP-LE DOWNSTREAM CG15602	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6214149	X_6214149_SNP [dm3] X_6320116_SNP [dm6]	T	C	1.687e^-4	0.451	INTRON CG15894
2L	11490612	2L_11490612_SNP [dm3] 2L_11490612_SNP [dm6]	C	A	1.688e^-4	0.451	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	7634226	2L_7634226_SNP [dm3] 2L_7634226_SNP [dm6]	G	A	1.689e^-4	0.451	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	21521657	3L_21521657_SNP [dm3] 3L_21528557_SNP [dm6]	A	G	1.690e^-4	0.451	NON_SYNONYMOUS_CODING CG32442 UTR_3_PRIME CG32442 DOWNSTREAM CG7611 EXON CR43877	TF binding site BDTNP1_TFBS_Med
3L	13252007	3L_13252007_SNP [dm3] 3L_13258907_SNP [dm6]	C	T	1.692e^-4	0.451	INTRON caps
3L	2016155	3L_2016155_SNP [dm3] 3L_2016155_SNP [dm6]	G	C	1.700e^-4	0.451	INTERGENIC
2L	11530697	2L_11530697_SNP [dm3] 2L_11530697_SNP [dm6]	G	T	1.705e^-4	0.451	NON_SYNONYMOUS_CODING CG31706
2L	10426784	2L_10426784_SNP [dm3] 2L_10426784_SNP [dm6]	T	C	1.707e^-4	0.451	UPSTREAM KdelR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	16175496	3L_16175496_SNP [dm3] 3L_16182396_SNP [dm6]	G	T	1.708e^-4	0.451	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8885366	2L_8885366_SNP [dm3] 2L_8885366_SNP [dm6]	C	T	1.708e^-4	0.451	INTERGENIC
2L	14391209	2L_14391209_SNP [dm3] 2L_14391209_SNP [dm6]	G	A	1.716e^-4	0.451	SYNONYMOUS_CODING elB	TF binding site mE1_TFBS_chinmo
X	6275753	X_6275753_DEL [dm3] X_6381720_DEL [dm6]	AT	A	1.716e^-4	0.451	INTERGENIC
3R	15368093	3R_15368093_SNP [dm3] 3R_19542371_SNP [dm6]	G	T	1.720e^-4	0.451	INTRON Dys
X	13177632	X_13177632_SNP [dm3] X_13283599_SNP [dm6]	T	A	1.721e^-4	0.451	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
2L	8886767	2L_8886767_DEL [dm3] 2L_8886767_DEL [dm6]	CCGT	TG	1.723e^-4	0.451	DOWNSTREAM CR44415 INTERGENIC	TF binding site mE1_TFBS_cnc
2L	8889125	2L_8889125_SNP [dm3] 2L_8889125_SNP [dm6]	C	T	1.724e^-4	0.451	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
3R	6010054	3R_6010054_SNP [dm3] 3R_10184332_SNP [dm6]	C	T	1.728e^-4	0.451	INTRON CG12814	TF binding site mE1_TFBS_cad
3R	19564882	3R_19564882_SNP [dm3] 3R_23739160_SNP [dm6]	C	G	1.728e^-4	0.451	INTRON Hmgcr
3R	6013781	3R_6013781_SNP [dm3] 3R_10188059_SNP [dm6]	T	G	1.730e^-4	0.451	UTR_5_PRIME CG12814
2L	4234697	2L_4234697_SNP [dm3] 2L_4234697_SNP [dm6]	A	T	1.730e^-4	0.451	INTERGENIC
3L	11835314	3L_11835314_INS [dm3] 3L_11842214_INS [dm6]	G	GAGG	1.732e^-4	0.451	INTERGENIC
X	16477605	X_16477605_SNP [dm3] X_16583572_SNP [dm6]	A	T	1.736e^-4	0.451	INTRON CanA-14F
2L	10502990	2L_10502990_SNP [dm3] 2L_10502990_SNP [dm6]	T	A	1.744e^-4	0.451	INTRON Myo31DF
2L	13230850	2L_13230850_SNP [dm3] 2L_13230850_SNP [dm6]	C	T	1.747e^-4	0.451	DOWNSTREAM CG16815 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	10443207	X_10443207_SNP [dm3] X_10549174_SNP [dm6]	A	T	1.751e^-4	0.451	INTRON spri
2R	1113712	2R_1113712_SNP [dm3] 2R_5226207_SNP [dm6]	T	A	1.762e^-4	0.451	INTRON Nipped-A
3R	4818874	3R_4818874_SNP [dm3] 3R_8993152_SNP [dm6]	C	T	1.762e^-4	0.451	UPSTREAM CG11975 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	12315782	2L_12315782_SNP [dm3] 2L_12315782_SNP [dm6]	T	C	1.764e^-4	0.451	DOWNSTREAM CR45283 EXON CR45282
2L	8888058	2L_8888058_SNP [dm3] 2L_8888058_SNP [dm6]	G	C	1.765e^-4	0.451	UPSTREAM CR44415 INTERGENIC	TF binding site mE1_TFBS_cad
2L	4409380	2L_4409380_SNP [dm3] 2L_4409380_SNP [dm6]	G	A	1.768e^-4	0.451	INTRON CG15431	TF binding site mE1_TFBS_chinmo
2R	7939211	2R_7939211_SNP [dm3] 2R_12051706_SNP [dm6]	C	G	1.772e^-4	0.451	UTR_5_PRIME CG30039
2R	14653400	2R_14653400_SNP [dm3] 2R_18765895_SNP [dm6]	A	G	1.772e^-4	0.451	INTRON Mctp
3L	1381338	3L_1381338_SNP [dm3] 3L_1381338_SNP [dm6]	A	G	1.774e^-4	0.451	DOWNSTREAM tRNA:CR32329 INTRON Ptp61F & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	615874	2L_615874_SNP [dm3] 2L_615874_SNP [dm6]	T	C	1.775e^-4	0.451	INTERGENIC
3R	3541692	3R_3541692_SNP [dm3] 3R_7715970_SNP [dm6]	G	C	1.781e^-4	0.451	INTERGENIC
2L	10373580	2L_10373580_DEL [dm3] 2L_10373580_DEL [dm6]	AA	A	1.782e^-4	0.451	UTR_3_PRIME CG33303 DOWNSTREAM CG33303 INTRON rho-5
3R	15367702	3R_15367702_DEL [dm3] 3R_19541980_DEL [dm6]	TTGACTGTTGA...	T	1.783e^-4	0.451	INTRON Dys
2L	615853	2L_615853_SNP [dm3] 2L_615853_SNP [dm6]	C	T	1.783e^-4	0.451	INTERGENIC
2L	8195609	2L_8195609_SNP [dm3] 2L_8195609_SNP [dm6]	G	A	1.787e^-4	0.451	INTRON CG8475 EXON CR44116	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10620461	2L_10620461_SNP [dm3] 2L_10620461_SNP [dm6]	T	A	1.788e^-4	0.451	INTRON Trim9
3R	3866804	3R_3866804_SNP [dm3] 3R_8041082_SNP [dm6]	G	T	1.795e^-4	0.451	UPSTREAM CG43060 INTERGENIC
3R	15368946	3R_15368946_SNP [dm3] 3R_19543224_SNP [dm6]	C	G	1.798e^-4	0.451	INTRON Dys
X	8190948	X_8190948_INS [dm3] X_8296915_INS [dm6]	A	ACGGACTTAAGATCAAA...	1.799e^-4	0.451	INTRON nAChRalpha3
3L	3320237	3L_3320237_SNP [dm3] 3L_3320237_SNP [dm6]	A	T	1.800e^-4	0.451	UPSTREAM CG12016 INTRON CG12016 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Stat92E
X	18828906	X_18828906_SNP [dm3] X_18934873_SNP [dm6]	T	C	1.801e^-4	0.451	INTRON CG43759
2L	16468627	2L_16468627_SNP [dm3] 2L_16468627_SNP [dm6]	G	C	1.801e^-4	0.451	SYNONYMOUS_CODING dac
3R	26981967	3R_26981967_SNP [dm3] 3R_31156245_SNP [dm6]	A	T	1.802e^-4	0.451	INTRON Gycbeta100B
2L	4409387	2L_4409387_SNP [dm3] 2L_4409387_SNP [dm6]	T	G	1.808e^-4	0.451	INTRON CG15431	TF binding site mE1_TFBS_chinmo
2R	10895228	2R_10895228_SNP [dm3] 2R_15007723_SNP [dm6]	A	C	1.810e^-4	0.451	INTERGENIC
3L	19408592	3L_19408592_SNP [dm3] 3L_19415492_SNP [dm6]	A	G	1.812e^-4	0.451	INTERGENIC
2L	6005978	2L_6005978_SNP [dm3] 2L_6005978_SNP [dm6]	A	G	1.813e^-4	0.451	SYNONYMOUS_CODING Gal EXON CR43866
3R	6389453	3R_6389453_INS [dm3] 3R_10563731_INS [dm6]	A	AA	1.815e^-4	0.451	INTRON hth
3L	2465701	3L_2465701_SNP [dm3] 3L_2465701_SNP [dm6]	G	C	1.817e^-4	0.451	UTR_3_PRIME CG45186 DOWNSTREAM CG45186 INTRON CG45186
2R	14582128	2R_14582128_SNP [dm3] 2R_18694623_SNP [dm6]	G	A	1.818e^-4	0.451	INTRON Sik3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6493388	3R_6493388_SNP [dm3] 3R_10667666_SNP [dm6]	G	T	1.820e^-4	0.451	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15120025	2R_15120025_SNP [dm3] 2R_19232520_SNP [dm6]	A	G	1.821e^-4	0.451	INTRON cora	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	487123	2L_487123_SNP [dm3] 2L_487123_SNP [dm6]	C	T	1.826e^-4	0.451	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	18846963	X_18846963_SNP [dm3] X_18952930_SNP [dm6]	T	G	1.828e^-4	0.451	INTRON CG43759
2L	10574780	2L_10574780_SNP [dm3] 2L_10574780_SNP [dm6]	A	C	1.830e^-4	0.451	INTRON Trim9
3R	15367692	3R_15367692_SNP [dm3] 3R_19541970_SNP [dm6]	A	G	1.833e^-4	0.451	INTRON Dys
3L	7109887	3L_7109887_SNP [dm3] 3L_7116787_SNP [dm6]	T	C	1.839e^-4	0.451	INTRON form3
3R	14269408	3R_14269408_SNP [dm3] 3R_18443686_SNP [dm6]	C	A	1.840e^-4	0.451	INTRON fru
2L	11034165	2L_11034165_SNP [dm3] 2L_11034165_SNP [dm6]	A	C	1.844e^-4	0.451	UPSTREAM CG18666 INTRON Samuel
2R	10702188	2R_10702188_SNP [dm3] 2R_14814683_SNP [dm6]	C	T	1.847e^-4	0.451	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	13715453	3L_13715453_SNP [dm3] 3L_13722353_SNP [dm6]	A	G	1.851e^-4	0.451	INTRON bru-3
2L	9090382	2L_9090382_SNP [dm3] 2L_9090382_SNP [dm6]	C	T	1.856e^-4	0.451	DOWNSTREAM Toll-4 INTERGENIC
3R	3151154	3R_3151154_SNP [dm3] 3R_7325432_SNP [dm6]	T	C	1.859e^-4	0.451	UPSTREAM CG44335 INTERGENIC
3L	4312147	3L_4312147_SNP [dm3] 3L_4312147_SNP [dm6]	A	G	1.860e^-4	0.451	INTERGENIC
2L	9500001	2L_9500001_SNP [dm3] 2L_9500001_SNP [dm6]	T	C	1.861e^-4	0.451	INTRON CG33298
2R	12710541	2R_12710541_INS [dm3] 2R_16823036_INS [dm6]	A	AT	1.862e^-4	0.451	INTERGENIC
2R	12342332	2R_12342332_SNP [dm3] 2R_16454827_SNP [dm6]	C	G	1.863e^-4	0.451	INTERGENIC
X	8927745	X_8927745_DEL [dm3] X_9033712_DEL [dm6]	TTTTTCC	T	1.867e^-4	0.451	INTRON CR43836 & 1 other
3R	24085828	3R_24085828_SNP [dm3] 3R_28260106_SNP [dm6]	T	C	1.882e^-4	0.451	INTERGENIC
3L	1720617	3L_1720617_SNP [dm3] 3L_1720617_SNP [dm6]	T	A	1.883e^-4	0.451	UTR_3_PRIME CG18171 INTRON drpr
3L	16553930	3L_16553930_SNP [dm3] 3L_16560830_SNP [dm6]	C	T	1.886e^-4	0.451	INTERGENIC
2L	1216205	2L_1216205_SNP [dm3] 2L_1216205_SNP [dm6]	C	G	1.896e^-4	0.451	UPSTREAM CR45346 DOWNSTREAM CR43263 INTERGENIC
2L	12388015	2L_12388015_SNP [dm3] 2L_12388015_SNP [dm6]	T	C	1.898e^-4	0.451	INTRON bru-2
2L	960850	2L_960850_SNP [dm3] 2L_960850_SNP [dm6]	G	A	1.900e^-4	0.451	INTERGENIC
2R	14059829	2R_14059829_SNP [dm3] 2R_18172324_SNP [dm6]	G	C	1.902e^-4	0.451	UPSTREAM Dgp-1 & 1 other INTRON Dgp-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	6052111	3R_6052111_SNP [dm3] 3R_10226389_SNP [dm6]	G	T	1.902e^-4	0.451	UPSTREAM CG42795 DOWNSTREAM CG34107 INTRON CG42795	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3321560	3L_3321560_SNP [dm3] 3L_3321560_SNP [dm6]	C	T	1.904e^-4	0.451	SYNONYMOUS_CODING CG12016 UTR_3_PRIME CG42456 DOWNSTREAM CG11526
2L	10450773	2L_10450773_SNP [dm3] 2L_10450773_SNP [dm6]	G	A	1.908e^-4	0.451	DOWNSTREAM loh INTRON ppk10
2L	10450779	2L_10450779_SNP [dm3] 2L_10450779_SNP [dm6]	C	T	1.908e^-4	0.451	DOWNSTREAM loh INTRON ppk10
2R	6922210	2R_6922210_SNP [dm3] 2R_11034705_SNP [dm6]	A	G	1.911e^-4	0.451	INTRON luna	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	11735869	X_11735869_DEL [dm3] X_11841836_DEL [dm6]	AAA	A	1.914e^-4	0.451	DOWNSTREAM Cyp28c1 & 1 other INTERGENIC
3L	3283453	3L_3283453_SNP [dm3] 3L_3283453_SNP [dm6]	G	A	1.916e^-4	0.451	INTRON CG12017
2L	4409420	2L_4409420_SNP [dm3] 2L_4409420_SNP [dm6]	G	A	1.920e^-4	0.451	INTRON CG15431	TF binding site mE1_TFBS_chinmo
3R	5427721	3R_5427721_SNP [dm3] 3R_9601999_SNP [dm6]	C	G	1.920e^-4	0.451	INTRON CG8312
3R	5427722	3R_5427722_SNP [dm3] 3R_9602000_SNP [dm6]	C	A	1.920e^-4	0.451	INTRON CG8312
2R	8492623	2R_8492623_DEL [dm3] 2R_12605118_DEL [dm6]	CAAGAAACCAAC...	C	1.921e^-4	0.451	INTRON Amph
X	5502595	X_5502595_SNP [dm3] X_5608562_SNP [dm6]	C	A	1.921e^-4	0.451	INTRON Vsx1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12390846	2L_12390846_SNP [dm3] 2L_12390846_SNP [dm6]	G	T	1.923e^-4	0.451	INTRON bru-2
2L	2893299	2L_2893299_SNP [dm3] 2L_2893299_SNP [dm6]	G	A	1.923e^-4	0.451	INTRON lilli	TF binding site BDTNP1_TFBS_twi
2L	7634262	2L_7634262_SNP [dm3] 2L_7634262_SNP [dm6]	C	T	1.923e^-4	0.451	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	22992897	3L_22992897_SNP [dm3] 3L_22999797_SNP [dm6]	T	C	1.926e^-4	0.451	INTRON nrm	transposable element FlyBase
2L	8887298	2L_8887298_SNP [dm3] 2L_8887298_SNP [dm6]	G	A	1.928e^-4	0.451	DOWNSTREAM CR44415 EXON CR44415	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	14699636	3R_14699636_SNP [dm3] 3R_18873914_SNP [dm6]	T	C	1.931e^-4	0.451	INTERGENIC
X	10441196	X_10441196_SNP [dm3] X_10547163_SNP [dm6]	A	C	1.931e^-4	0.451	UPSTREAM spri INTRON spri	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	5259416	2R_5259416_SNP [dm3] 2R_9371911_SNP [dm6]	G	A	1.931e^-4	0.451	INTRON CG13954
3R	6099893	3R_6099893_SNP [dm3] 3R_10274171_SNP [dm6]	G	A	1.932e^-4	0.451	INTRON CG43143
2L	15343939	2L_15343939_SNP [dm3] 2L_15343939_SNP [dm6]	G	A	1.937e^-4	0.451	INTERGENIC
3R	1693922	3R_1693922_SNP [dm3] 3R_5868200_SNP [dm6]	C	T	1.938e^-4	0.451	INTRON CG34113
X	8512731	X_8512731_SNP [dm3] X_8618698_SNP [dm6]	C	T	1.943e^-4	0.451	INTERGENIC	regulatory region REDfly_CRMs
2R	18436262	2R_18436262_SNP [dm3] 2R_22548757_SNP [dm6]	T	C	1.944e^-4	0.451	INTRON px
2R	18436263	2R_18436263_SNP [dm3] 2R_22548758_SNP [dm6]	A	T	1.944e^-4	0.451	INTRON px
3L	22973684	3L_22973684_SNP [dm3] 3L_22980584_SNP [dm6]	T	C	1.945e^-4	0.451	INTERGENIC
2L	8275470	2L_8275470_SNP [dm3] 2L_8275470_SNP [dm6]	T	C	1.946e^-4	0.451	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	6275723	X_6275723_INS [dm3] X_6381690_INS [dm6]	T	TA	1.948e^-4	0.451	INTERGENIC
X	6275728	X_6275728_MNP [dm3] X_6381695_MNP [dm6]	TCT	GAA	1.948e^-4	0.451	INTERGENIC
X	6275735	X_6275735_MNP [dm3] X_6381702_MNP [dm6]	GCA	CGT	1.948e^-4	0.451	INTERGENIC
X	6275742	X_6275742_DEL [dm3] X_6381709_DEL [dm6]	GTG	T	1.948e^-4	0.451	INTERGENIC
2L	4558867	2L_4558867_SNP [dm3] 2L_4558867_SNP [dm6]	G	A	1.955e^-4	0.451	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2120213	3L_2120213_SNP [dm3] 3L_2120213_SNP [dm6]	T	G	1.956e^-4	0.451	INTRON zormin
X	19936113	X_19936113_DEL [dm3] X_20042080_DEL [dm6]	TT	T	1.959e^-4	0.451	INTRON Dop2R
3L	416904	3L_416904_SNP [dm3] 3L_416904_SNP [dm6]	A	G	1.962e^-4	0.451	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9896984	2L_9896984_SNP [dm3] 2L_9896984_SNP [dm6]	C	T	1.963e^-4	0.451	SYNONYMOUS_CODING RpS2 DOWNSTREAM Bka & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	3151207	3R_3151207_SNP [dm3] 3R_7325485_SNP [dm6]	T	A	1.964e^-4	0.451	UPSTREAM CG44335 DOWNSTREAM CR44336 INTERGENIC
2L	8894907	2L_8894907_SNP [dm3] 2L_8894907_SNP [dm6]	C	T	1.964e^-4	0.451	INTERGENIC
X	5721290	X_5721290_SNP [dm3] X_5827257_SNP [dm6]	G	A	1.976e^-4	0.453	INTRON CG15765
2L	1216389	2L_1216389_SNP [dm3] 2L_1216389_SNP [dm6]	G	T	1.980e^-4	0.453	DOWNSTREAM CR43263 INTERGENIC
3R	6014731	3R_6014731_SNP [dm3] 3R_10189009_SNP [dm6]	G	T	1.985e^-4	0.454	INTRON CG12814	TF binding site mE1_TFBS_Trl
3L	19429608	3L_19429608_SNP [dm3] 3L_19436508_SNP [dm6]	G	A	1.987e^-4	0.454	INTERGENIC
2L	11183726	2L_11183726_SNP [dm3] 2L_11183726_SNP [dm6]	A	T	1.992e^-4	0.454	INTRON Ca-beta
X	20678460	X_20678460_SNP [dm3] X_20807433_SNP [dm6]	A	G	1.995e^-4	0.454	INTRON shakB
2L	8888158	2L_8888158_SNP [dm3] 2L_8888158_SNP [dm6]	C	A	2.004e^-4	0.454	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2R	10196269	2R_10196269_SNP [dm3] 2R_14308764_SNP [dm6]	C	T	2.006e^-4	0.454	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	4182558	2R_4182558_SNP [dm3] 2R_8295053_SNP [dm6]	G	A	2.007e^-4	0.454	INTERGENIC
3R	6472585	3R_6472585_SNP [dm3] 3R_10646863_SNP [dm6]	T	C	2.015e^-4	0.454	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
2R	8492658	2R_8492658_SNP [dm3] 2R_12605153_SNP [dm6]	G	T	2.018e^-4	0.454	INTRON Amph
2L	19582084	2L_19582084_DEL [dm3] 2L_19582084_DEL [dm6]	GCGGCGACCGCTCCTAGCG...	A	2.020e^-4	0.454	DOWNSTREAM CG10262	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15603058	2R_15603058_SNP [dm3] 2R_19715553_SNP [dm6]	T	C	2.021e^-4	0.454	UPSTREAM tRNA:CR30215 DOWNSTREAM CG8517 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	5990903	3R_5990903_SNP [dm3] 3R_10165181_SNP [dm6]	T	C	2.022e^-4	0.454	SYNONYMOUS_CODING Best1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8886557	2L_8886557_SNP [dm3] 2L_8886557_SNP [dm6]	A	T	2.024e^-4	0.454	DOWNSTREAM CR44415 INTERGENIC	TF binding site mE1_TFBS_cnc
3R	6331221	3R_6331221_SNP [dm3] 3R_10505499_SNP [dm6]	G	A	2.029e^-4	0.454	INTERGENIC
X	11423949	X_11423949_SNP [dm3] X_11529916_SNP [dm6]	A	G	2.035e^-4	0.454	INTRON Drak
3R	16349058	3R_16349058_SNP [dm3] 3R_20523336_SNP [dm6]	G	A	2.042e^-4	0.454	INTERGENIC
3L	11830098	3L_11830098_SNP [dm3] 3L_11836998_SNP [dm6]	A	G	2.043e^-4	0.454	UPSTREAM CG43064 INTERGENIC
2L	12231098	2L_12231098_SNP [dm3] 2L_12231098_SNP [dm6]	C	G	2.044e^-4	0.454	INTRON aret
X	6406966	X_6406966_SNP [dm3] X_6512933_SNP [dm6]	G	A	2.047e^-4	0.454	INTRON CG42340
2L	12050914	2L_12050914_SNP [dm3] 2L_12050914_SNP [dm6]	T	C	2.047e^-4	0.454	SYNONYMOUS_CODING CG14945 DOWNSTREAM JhI-21
X	6124507	X_6124507_SNP [dm3] X_6230474_SNP [dm6]	C	T	2.055e^-4	0.454	SYNONYMOUS_CODING CG14446
2L	6114056	2L_6114056_SNP [dm3] 2L_6114056_SNP [dm6]	C	A	2.060e^-4	0.454	INTRON stai
3R	1288929	3R_1288929_SNP [dm3] 3R_5463207_SNP [dm6]	A	C	2.061e^-4	0.454	UPSTREAM PEK INTRON PEK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7592647	2L_7592647_SNP [dm3] 2L_7592647_SNP [dm6]	T	C	2.064e^-4	0.454	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10035804	3L_10035804_SNP [dm3] 3L_10042704_SNP [dm6]	C	A	2.066e^-4	0.454	INTRON dpr6
2L	615855	2L_615855_SNP [dm3] 2L_615855_SNP [dm6]	T	A	2.069e^-4	0.454	INTERGENIC
2L	10519528	2L_10519528_DEL [dm3] 2L_10519528_DEL [dm6]	CCTGTGAGCCTTC...	C	2.071e^-4	0.454	DOWNSTREAM Lrr47 INTERGENIC
X	6275720	X_6275720_SNP [dm3] X_6381687_SNP [dm6]	T	G	2.071e^-4	0.454	INTERGENIC
3L	9484313	3L_9484313_SNP [dm3] 3L_9491213_SNP [dm6]	T	A	2.072e^-4	0.454	INTRON CG32037	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	3710001	X_3710001_SNP [dm3] X_3815968_SNP [dm6]	G	A	2.076e^-4	0.454	INTRON ec	TF binding site BDTNP1_TFBS_twi
2R	13364433	2R_13364433_SNP [dm3] 2R_17476928_SNP [dm6]	A	G	2.076e^-4	0.454	UPSTREAM CG6520 DOWNSTREAM CG43110 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	13715455	3L_13715455_SNP [dm3] 3L_13722355_SNP [dm6]	A	C	2.077e^-4	0.454	INTRON bru-3
3L	5237996	3L_5237996_SNP [dm3] 3L_5244896_SNP [dm6]	C	A	2.078e^-4	0.454	INTRON shep
2L	893329	2L_893329_SNP [dm3] 2L_893329_SNP [dm6]	A	G	2.080e^-4	0.454	INTERGENIC
X	16682132	X_16682132_SNP [dm3] X_16788099_SNP [dm6]	G	A	2.082e^-4	0.454	SYNONYMOUS_CODING Sap30	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	14094763	2R_14094763_SNP [dm3] 2R_18207258_SNP [dm6]	G	A	2.085e^-4	0.454	UPSTREAM CG30114 INTERGENIC
2R	8778537	2R_8778537_SNP [dm3] 2R_12891032_SNP [dm6]	A	G	2.085e^-4	0.454	INTRON vg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	6477712	3R_6477712_SNP [dm3] 3R_10651990_SNP [dm6]	T	A	2.087e^-4	0.454	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_prd
3L	5785827	3L_5785827_SNP [dm3] 3L_5792727_SNP [dm6]	C	G	2.088e^-4	0.454	SYNONYMOUS_CODING Bre1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10720283	2R_10720283_SNP [dm3] 2R_14832778_SNP [dm6]	T	A	2.093e^-4	0.454	UPSTREAM CG10205 INTERGENIC
2R	13998657	2R_13998657_SNP [dm3] 2R_18111152_SNP [dm6]	T	G	2.093e^-4	0.454	DOWNSTREAM CG34196 INTERGENIC
2R	10954389	2R_10954389_SNP [dm3] 2R_15066884_SNP [dm6]	A	G	2.094e^-4	0.454	INTERGENIC	TF binding site mE1_TFBS_cad
2R	10954391	2R_10954391_SNP [dm3] 2R_15066886_SNP [dm6]	T	A	2.094e^-4	0.454	INTERGENIC	TF binding site mE1_TFBS_cad
2R	10248333	2R_10248333_SNP [dm3] 2R_14360828_SNP [dm6]	A	G	2.095e^-4	0.454	UPSTREAM Arc1 EXON CR10102	TF binding site mE1_TFBS_chinmo
X	17285172	X_17285172_SNP [dm3] X_17391139_SNP [dm6]	T	C	2.099e^-4	0.454	INTERGENIC
2L	950616	2L_950616_SNP [dm3] 2L_950616_SNP [dm6]	G	A	2.099e^-4	0.454	INTRON CG4341
X	16114865	X_16114865_SNP [dm3] X_16220832_SNP [dm6]	T	G	2.106e^-4	0.454	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	23565997	3R_23565997_SNP [dm3] 3R_27740275_SNP [dm6]	A	G	2.107e^-4	0.454	INTRON Ets98B
3L	21388080	3L_21388080_SNP [dm3] 3L_21394980_SNP [dm6]	G	A	2.110e^-4	0.454	INTRON rgn
X	17166791	X_17166791_SNP [dm3] X_17272758_SNP [dm6]	A	C	2.110e^-4	0.454	INTRON f	TF binding site mE1_TFBS_cad
2L	12127758	2L_12127758_SNP [dm3] 2L_12127758_SNP [dm6]	C	G	2.112e^-4	0.454	SYNONYMOUS_CODING CG17211
2L	5666321	2L_5666321_SNP [dm3] 2L_5666321_SNP [dm6]	T	G	2.113e^-4	0.454	INTRON Hsp60C
2L	2584017	2L_2584017_SNP [dm3] 2L_2584017_SNP [dm6]	C	T	2.113e^-4	0.454	SYNONYMOUS_CODING Drp1	TF binding site mE1_TFBS_chinmo
2R	17810720	2R_17810720_SNP [dm3] 2R_21923215_SNP [dm6]	T	A	2.117e^-4	0.455	INTRON Fili
3L	2683176	3L_2683176_SNP [dm3] 3L_2683176_SNP [dm6]	G	A	2.122e^-4	0.455	INTRON Fife
3L	2016100	3L_2016100_SNP [dm3] 3L_2016100_SNP [dm6]	C	T	2.133e^-4	0.457	INTERGENIC
3R	5014216	3R_5014216_SNP [dm3] 3R_9188494_SNP [dm6]	G	T	2.136e^-4	0.457	INTRON pum	TF binding site mE1_TFBS_inv
3R	3898767	3R_3898767_SNP [dm3] 3R_8073045_SNP [dm6]	G	C	2.140e^-4	0.457	INTRON mAChR-B
2L	8893464	2L_8893464_SNP [dm3] 2L_8893464_SNP [dm6]	C	A	2.145e^-4	0.457	INTERGENIC
3R	15367623	3R_15367623_SNP [dm3] 3R_19541901_SNP [dm6]	A	T	2.145e^-4	0.457	INTRON Dys
3L	8798770	3L_8798770_SNP [dm3] 3L_8805670_SNP [dm6]	G	A	2.146e^-4	0.457	SYNONYMOUS_CODING CG34427 DOWNSTREAM CG13312	TF binding site mE1_TFBS_chinmo
X	11056388	X_11056388_SNP [dm3] X_11162355_SNP [dm6]	C	T	2.151e^-4	0.458	SYNONYMOUS_CODING Dlic
2L	15348138	2L_15348138_SNP [dm3] 2L_15348138_SNP [dm6]	G	C	2.155e^-4	0.458	INTERGENIC
3R	6053866	3R_6053866_SNP [dm3] 3R_10228144_SNP [dm6]	G	A	2.163e^-4	0.459	INTRON CG42795
2L	1132779	2L_1132779_SNP [dm3] 2L_1132779_SNP [dm6]	T	C	2.166e^-4	0.459	NON_SYNONYMOUS_CODING Iris DOWNSTREAM CG4552
3R	6009372	3R_6009372_SNP [dm3] 3R_10183650_SNP [dm6]	G	T	2.169e^-4	0.46	INTRON CG12814
2L	12315731	2L_12315731_SNP [dm3] 2L_12315731_SNP [dm6]	G	A	2.173e^-4	0.46	DOWNSTREAM CR45282 & 1 other INTERGENIC
3R	16037302	3R_16037302_SNP [dm3] 3R_20211580_SNP [dm6]	C	T	2.180e^-4	0.46	INTRON Nlg4	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	12970055	2L_12970055_SNP [dm3] 2L_12970055_SNP [dm6]	T	G	2.180e^-4	0.46	INTERGENIC
X	6275751	X_6275751_SNP [dm3] X_6381718_SNP [dm6]	C	A	2.181e^-4	0.46	INTERGENIC
X	4982615	X_4982615_SNP [dm3] X_5088582_SNP [dm6]	T	C	2.182e^-4	0.46	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3985553	3L_3985553_SNP [dm3] 3L_3985553_SNP [dm6]	G	A	2.186e^-4	0.46	INTRON scrt
2L	12123397	2L_12123397_SNP [dm3] 2L_12123397_SNP [dm6]	C	A	2.190e^-4	0.46	INTRON CG17211
3L	7514571	3L_7514571_SNP [dm3] 3L_7521471_SNP [dm6]	T	A	2.193e^-4	0.46	INTRON ltl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	3320106	3L_3320106_SNP [dm3] 3L_3320106_SNP [dm6]	G	A	2.205e^-4	0.461	UPSTREAM PIG-C & 1 other INTRON CG12016 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
2R	13802874	2R_13802874_SNP [dm3] 2R_17915369_SNP [dm6]	G	A	2.206e^-4	0.461	INTRON Elk
2R	17140760	2R_17140760_SNP [dm3] 2R_21253255_SNP [dm6]	T	C	2.210e^-4	0.461	INTERGENIC
3L	4998405	3L_4998405_SNP [dm3] 3L_4998405_SNP [dm6]	T	C	2.210e^-4	0.461	INTRON Con	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9948303	3R_9948303_SNP [dm3] 3R_14122581_SNP [dm6]	C	A	2.210e^-4	0.461	UPSTREAM twf & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	4679752	2L_4679752_SNP [dm3] 2L_4679752_SNP [dm6]	G	A	2.212e^-4	0.461	INTERGENIC
2L	8889124	2L_8889124_SNP [dm3] 2L_8889124_SNP [dm6]	G	T	2.214e^-4	0.461	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
3L	2497438	3L_2497438_SNP [dm3] 3L_2497438_SNP [dm6]	T	C	2.217e^-4	0.461	SYNONYMOUS_CODING CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	14141764	3L_14141764_SNP [dm3] 3L_14148664_SNP [dm6]	T	C	2.218e^-4	0.461	INTERGENIC	regulatory region REDfly_CRMs
3L	16336750	3L_16336750_SNP [dm3] 3L_16343650_SNP [dm6]	A	T	2.218e^-4	0.461	INTRON CG4998	TF binding site mE1_TFBS_cad
3R	6459932	3R_6459932_SNP [dm3] 3R_10634210_SNP [dm6]	A	G	2.222e^-4	0.461	INTRON hth	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	6275686	X_6275686_SNP [dm3] X_6381653_SNP [dm6]	A	T	2.226e^-4	0.461	INTERGENIC
3L	8957979	3L_8957979_SNP [dm3] 3L_8964879_SNP [dm6]	G	T	2.227e^-4	0.461	UPSTREAM CG5660 DOWNSTREAM CG5653 INTERGENIC
3L	4143576	3L_4143576_SNP [dm3] 3L_4143576_SNP [dm6]	C	G	2.239e^-4	0.463	NON_SYNONYMOUS_CODING CG32260 INTRON CG32260
3L	21084739	3L_21084739_SNP [dm3] 3L_21091639_SNP [dm6]	T	A	2.244e^-4	0.463	INTRON ko
2L	10441651	2L_10441651_SNP [dm3] 2L_10441651_SNP [dm6]	G	T	2.258e^-4	0.463	UPSTREAM loh DOWNSTREAM CG13142 & 1 other INTERGENIC
2L	8916250	2L_8916250_DEL [dm3] 2L_8916250_DEL [dm6]	TT	T	2.259e^-4	0.463	INTRON CG34398
3L	21540320	3L_21540320_SNP [dm3] 3L_21547220_SNP [dm6]	C	T	2.260e^-4	0.463	NON_SYNONYMOUS_CODING Wnk	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	4597815	X_4597815_SNP [dm3] X_4703782_SNP [dm6]	C	A	2.263e^-4	0.463	SYNONYMOUS_CODING l_1_G0334	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	8926324	2L_8926324_SNP [dm3] 2L_8926324_SNP [dm6]	A	C	2.266e^-4	0.463	NON_SYNONYMOUS_CODING CG34398	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19428795	X_19428795_SNP [dm3] X_19534762_SNP [dm6]	T	G	2.267e^-4	0.463	INTRON CG32532	TF binding site mE1_TFBS_chinmo
X	18145403	X_18145403_SNP [dm3] X_18251370_SNP [dm6]	A	C	2.268e^-4	0.463	INTERGENIC
3L	2570088	3L_2570088_SNP [dm3] 3L_2570088_SNP [dm6]	C	T	2.270e^-4	0.463	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10900096	2L_10900096_SNP [dm3] 2L_10900096_SNP [dm6]	T	G	2.271e^-4	0.463	DOWNSTREAM CG14070 INTERGENIC
2L	3691232	2L_3691232_SNP [dm3] 2L_3691232_SNP [dm6]	C	G	2.279e^-4	0.463	SYNONYMOUS_CODING CG34340 DOWNSTREAM CG16704	TF binding site mE1_TFBS_chinmo
2L	11057526	2L_11057526_DEL [dm3] 2L_11057526_DEL [dm6]	AA	A	2.286e^-4	0.463	UPSTREAM Samuel INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	12238491	2L_12238491_SNP [dm3] 2L_12238491_SNP [dm6]	C	T	2.290e^-4	0.463	INTRON aret
X	7635237	X_7635237_SNP [dm3] X_7741204_SNP [dm6]	A	C	2.293e^-4	0.463	INTERGENIC
X	10109063	X_10109063_SNP [dm3] X_10215030_SNP [dm6]	G	A	2.294e^-4	0.463	SYNONYMOUS_CODING CG2962 UTR_3_PRIME l_1_G0230 DOWNSTREAM l_1_G0230	TF binding site mE1_TFBS_chinmo
X	20446496	X_20446496_SNP [dm3] X_20575469_SNP [dm6]	A	T	2.295e^-4	0.463	DOWNSTREAM CG42580 INTERGENIC
2R	19365899	2R_19365899_SNP [dm3] 2R_23478376_SNP [dm6]	T	G	2.297e^-4	0.463	UPSTREAM CR43793 INTRON CG43795
2R	11769643	2R_11769643_SNP [dm3] 2R_15882138_SNP [dm6]	T	C	2.297e^-4	0.463	INTRON sli
3R	15367573	3R_15367573_SNP [dm3] 3R_19541851_SNP [dm6]	G	A	2.302e^-4	0.463	INTRON Dys
3R	15367647	3R_15367647_SNP [dm3] 3R_19541925_SNP [dm6]	G	A	2.302e^-4	0.463	INTRON Dys
X	6275719	X_6275719_SNP [dm3] X_6381686_SNP [dm6]	T	A	2.304e^-4	0.463	INTERGENIC
3R	5994863	3R_5994863_SNP [dm3] 3R_10169141_SNP [dm6]	T	C	2.311e^-4	0.463	INTRON Best1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_zfh1
2R	14493344	2R_14493344_SNP [dm3] 2R_18605839_SNP [dm6]	G	T	2.311e^-4	0.463	INTRON GEFmeso
3L	2121607	3L_2121607_SNP [dm3] 3L_2121607_SNP [dm6]	A	C	2.318e^-4	0.463	INTRON zormin	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1579350	3L_1579350_SNP [dm3] 3L_1579350_SNP [dm6]	A	T	2.318e^-4	0.463	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	4186099	2R_4186099_SNP [dm3] 2R_8298594_SNP [dm6]	T	C	2.318e^-4	0.463	DOWNSTREAM mir-280 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19281394	2R_19281394_SNP [dm3] 2R_23393871_SNP [dm6]	G	C	2.320e^-4	0.463	INTRON CG3530	TF binding site mE1_TFBS_chinmo
2L	14281163	2L_14281163_SNP [dm3] 2L_14281163_SNP [dm6]	G	T	2.321e^-4	0.463	INTRON wb	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
2L	3344037	2L_3344037_SNP [dm3] 2L_3344037_SNP [dm6]	C	A	2.322e^-4	0.463	INTRON E23
X	19610758	X_19610758_SNP [dm3] X_19716725_SNP [dm6]	T	A	2.326e^-4	0.463	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9457555	2L_9457555_SNP [dm3] 2L_9457555_SNP [dm6]	G	A	2.328e^-4	0.463	INTRON numb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	2763767	2R_2763767_SNP [dm3] 2R_6876262_SNP [dm6]	A	T	2.330e^-4	0.463	UTR_3_PRIME Spn42Da UPSTREAM CG9447 DOWNSTREAM Spn42Da INTRON Spn42Da & 1 other
2L	11484679	2L_11484679_SNP [dm3] 2L_11484679_SNP [dm6]	G	T	2.330e^-4	0.463	UPSTREAM CG43355 & 1 other INTERGENIC
3L	13404409	3L_13404409_SNP [dm3] 3L_13411309_SNP [dm6]	T	A	2.331e^-4	0.463	UTR_3_PRIME CG10222 DOWNSTREAM CG10222	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
2L	8889161	2L_8889161_SNP [dm3] 2L_8889161_SNP [dm6]	T	A	2.332e^-4	0.463	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
2R	17810675	2R_17810675_SNP [dm3] 2R_21923170_SNP [dm6]	G	A	2.332e^-4	0.463	INTRON Fili
3R	27068267	3R_27068267_SNP [dm3] 3R_31242545_SNP [dm6]	T	C	2.333e^-4	0.463	INTRON qless
2L	7500266	2L_7500266_SNP [dm3] 2L_7500266_SNP [dm6]	A	G	2.334e^-4	0.463	SYNONYMOUS_CODING RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	9341644	X_9341644_SNP [dm3] X_9447611_SNP [dm6]	T	C	2.337e^-4	0.463	INTRON mgl	TF binding site BDTNP1_TFBS_dl
X	3709807	X_3709807_SNP [dm3] X_3815774_SNP [dm6]	A	G	2.338e^-4	0.463	INTRON ec	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20016232	3R_20016232_SNP [dm3] 3R_24190510_SNP [dm6]	G	A	2.339e^-4	0.463	SYNONYMOUS_CODING jnj
X	6275746	X_6275746_SNP [dm3] X_6381713_SNP [dm6]	A	T	2.345e^-4	0.463	INTERGENIC
3L	4312254	3L_4312254_SNP [dm3] 3L_4312254_SNP [dm6]	G	A	2.349e^-4	0.463	INTERGENIC
2L	10873583	2L_10873583_DEL [dm3] 2L_10873583_DEL [dm6]	TGA	T	2.352e^-4	0.463	INTERGENIC
3R	6440934	3R_6440934_SNP [dm3] 3R_10615212_SNP [dm6]	A	T	2.354e^-4	0.463	UPSTREAM hth INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13524007	2R_13524007_SNP [dm3] 2R_17636502_SNP [dm6]	G	A	2.354e^-4	0.463	INTRON CG10936
X	13631991	X_13631991_SNP [dm3] X_13737958_SNP [dm6]	G	T	2.365e^-4	0.465	UTR_5_PRIME CG11134 UPSTREAM CG11134 INTRON Grip91	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	14071036	2R_14071036_SNP [dm3] 2R_18183531_SNP [dm6]	T	C	2.370e^-4	0.465	SYNONYMOUS_CODING CG5721 DOWNSTREAM CG33958	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	20731281	X_20731281_SNP [dm3] X_20860254_SNP [dm6]	A	G	2.375e^-4	0.465	INTRON shakB
3L	1744145	3L_1744145_SNP [dm3] 3L_1744145_SNP [dm6]	G	A	2.375e^-4	0.465	SYNONYMOUS_CODING Gk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20507216	2L_20507216_SNP [dm3] 2L_20507216_SNP [dm6]	A	T	2.380e^-4	0.466	INTERGENIC
3R	14534692	3R_14534692_INS [dm3] 3R_18708970_INS [dm6]	A	AT	2.390e^-4	0.466	INTRON VAChT & 1 other
2L	2373367	2L_2373367_SNP [dm3] 2L_2373367_SNP [dm6]	C	T	2.391e^-4	0.466	SYNONYMOUS_CODING CG3609	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15088144	2R_15088144_SNP [dm3] 2R_19200639_SNP [dm6]	T	A	2.393e^-4	0.466	INTRON hppy
2R	6798118	2R_6798118_SNP [dm3] 2R_10910613_SNP [dm6]	T	C	2.394e^-4	0.466	DOWNSTREAM Obp47a INTERGENIC
3R	6499290	3R_6499290_SNP [dm3] 3R_10673568_SNP [dm6]	T	A	2.395e^-4	0.466	INTERGENIC
2L	12458059	2L_12458059_SNP [dm3] 2L_12458059_SNP [dm6]	T	A	2.401e^-4	0.467	SYNONYMOUS_CODING bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	8947886	X_8947886_SNP [dm3] X_9053853_SNP [dm6]	C	A	2.403e^-4	0.467	UTR_3_PRIME CG42388 DOWNSTREAM CG42388 & 1 other
3R	16037293	3R_16037293_SNP [dm3] 3R_20211571_SNP [dm6]	C	T	2.407e^-4	0.467	INTRON Nlg4	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	16174938	3L_16174938_SNP [dm3] 3L_16181838_SNP [dm6]	A	T	2.408e^-4	0.467	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8888953	2L_8888953_SNP [dm3] 2L_8888953_SNP [dm6]	A	T	2.408e^-4	0.467	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
X	17768874	X_17768874_SNP [dm3] X_17874841_SNP [dm6]	G	A	2.416e^-4	0.467	SYNONYMOUS_CODING mnb INTRON mnb	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
X	11056113	X_11056113_SNP [dm3] X_11162080_SNP [dm6]	C	A	2.419e^-4	0.467	SPLICE_SITE_REGION Dlic INTRON Dlic	TF binding site mE1_TFBS_sens
3L	10077851	3L_10077851_SNP [dm3] 3L_10084751_SNP [dm6]	G	A	2.423e^-4	0.467	INTRON dpr6
2L	10426632	2L_10426632_SNP [dm3] 2L_10426632_SNP [dm6]	C	T	2.425e^-4	0.467	UPSTREAM KdelR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	14462283	2R_14462283_SNP [dm3] 2R_18574778_SNP [dm6]	C	T	2.425e^-4	0.467	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	17173457	X_17173457_SNP [dm3] X_17279424_SNP [dm6]	T	C	2.430e^-4	0.468	SYNONYMOUS_CODING f	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18743682	2R_18743682_SNP [dm3] 2R_22856159_SNP [dm6]	T	C	2.438e^-4	0.468	SYNONYMOUS_CODING inaD DOWNSTREAM RpL23	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9373404	3L_9373404_SNP [dm3] 3L_9380304_SNP [dm6]	A	G	2.438e^-4	0.468	UPSTREAM Hsp67Ba EXON CR43481	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3881124	3L_3881124_SNP [dm3] 3L_3881124_SNP [dm6]	A	G	2.438e^-4	0.468	INTERGENIC
2R	5816116	2R_5816116_SNP [dm3] 2R_9928611_SNP [dm6]	G	A	2.441e^-4	0.468	INTRON Mef2
2L	13230834	2L_13230834_SNP [dm3] 2L_13230834_SNP [dm6]	C	T	2.446e^-4	0.468	DOWNSTREAM CG16815 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	7366187	3L_7366187_SNP [dm3] 3L_7373087_SNP [dm6]	G	C	2.447e^-4	0.468	UTR_3_PRIME akirin DOWNSTREAM akirin & 1 other
2L	6127967	2L_6127967_SNP [dm3] 2L_6127967_SNP [dm6]	C	A	2.452e^-4	0.468	NON_SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730 UPSTREAM WDR79	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10137963	2L_10137963_SNP [dm3] 2L_10137963_SNP [dm6]	T	A	2.453e^-4	0.468	INTRON CG44153
2L	14532715	2L_14532715_SNP [dm3] 2L_14532715_SNP [dm6]	T	C	2.453e^-4	0.468	EXON CR44852
X	16824746	X_16824746_SNP [dm3] X_16930713_SNP [dm6]	T	G	2.458e^-4	0.468	INTRON CG4928
3R	24768402	3R_24768402_SNP [dm3] 3R_28942680_SNP [dm6]	A	T	2.459e^-4	0.468	INTRON CG14521	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15093353	3R_15093353_SNP [dm3] 3R_19267631_SNP [dm6]	T	A	2.460e^-4	0.468	INTERGENIC
2L	13331821	2L_13331821_SNP [dm3] 2L_13331821_SNP [dm6]	C	A	2.464e^-4	0.468	UPSTREAM CG43778 INTERGENIC
2L	10479010	2L_10479010_SNP [dm3] 2L_10479010_SNP [dm6]	T	A	2.471e^-4	0.468	INTRON RluA-2
X	5326933	X_5326933_SNP [dm3] X_5432900_SNP [dm6]	T	C	2.473e^-4	0.468	UPSTREAM CR44471 DOWNSTREAM CG15784 INTERGENIC	TF binding site mE1_TFBS_Trl
X	4360984	X_4360984_SNP [dm3] X_4466951_SNP [dm6]	A	G	2.473e^-4	0.468	INTRON bi & 1 other
X	8746439	X_8746439_SNP [dm3] X_8852406_SNP [dm6]	G	A	2.476e^-4	0.469	INTRON CG12075
3R	6094882	3R_6094882_SNP [dm3] 3R_10269160_SNP [dm6]	C	T	2.479e^-4	0.469	INTRON CG43143
3R	6474624	3R_6474624_SNP [dm3] 3R_10648902_SNP [dm6]	G	T	2.483e^-4	0.469	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
X	15097662	X_15097662_DEL [dm3] X_15203629_DEL [dm6]	ATA	A	2.487e^-4	0.469	INTERGENIC	TF binding site mE1_TFBS_inv
2L	2763047	2L_2763047_SNP [dm3] 2L_2763047_SNP [dm6]	C	T	2.498e^-4	0.471	SYNONYMOUS_CODING Trn-SR DOWNSTREAM CG3077
2L	10706467	2L_10706467_SNP [dm3] 2L_10706467_SNP [dm6]	A	G	2.506e^-4	0.471	UPSTREAM Lip2 INTRON Lip2	TF binding site mE1_TFBS_inv
2L	6114042	2L_6114042_SNP [dm3] 2L_6114042_SNP [dm6]	A	G	2.507e^-4	0.471	INTRON stai
2L	11057266	2L_11057266_DEL [dm3] 2L_11057266_DEL [dm6]	ATTTCTTA	A	2.509e^-4	0.471	UPSTREAM Samuel INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	814548	3R_814548_SNP [dm3] 3R_4988826_SNP [dm6]	T	A	2.515e^-4	0.472	INTRON CG2022	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
X	9410112	X_9410112_INS [dm3] X_9516079_INS [dm6]	A	AC	2.517e^-4	0.472	INTRON CG32700

Missing results

By genomic position
Variant impact
Gene name

pc_SegregVariants_3L phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results