DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.609e^-21)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	6.003e-07

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	12.6572	0.0018

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3341 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	15348697	2L_15348697_SNP [dm3] 2L_15348697_SNP [dm6]	C	T	2.239e^-8	0.028	INTERGENIC
2L	15348712	2L_15348712_INS [dm3] 2L_15348712_INS [dm6]	G	AA	3.030e^-8	0.028	INTERGENIC
2L	15348728	2L_15348728_SNP [dm3] 2L_15348728_SNP [dm6]	T	A	2.026e^-7	0.127	INTERGENIC
3R	14626457	3R_14626457_SNP [dm3] 3R_18800735_SNP [dm6]	T	G	3.247e^-7	0.147	UTR_3_PRIME CG18208
2L	9469433	2L_9469433_SNP [dm3] 2L_9469433_SNP [dm6]	C	T	4.481e^-7	0.147	UPSTREAM CR43769 INTERGENIC
2L	15348643	2L_15348643_SNP [dm3] 2L_15348643_SNP [dm6]	G	T	4.717e^-7	0.147	INTERGENIC
2L	8884999	2L_8884999_SNP [dm3] 2L_8884999_SNP [dm6]	C	T	1.227e^-6	0.303	INTERGENIC
3R	14626385	3R_14626385_SNP [dm3] 3R_18800663_SNP [dm6]	T	C	1.293e^-6	0.303	UTR_3_PRIME CG18208
X	11237150	X_11237150_INS [dm3] X_11343117_INS [dm6]	T	TT	1.542e^-6	0.315	INTRON CG34348
2L	15337740	2L_15337740_SNP [dm3] 2L_15337740_SNP [dm6]	C	T	1.890e^-6	0.315	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6976287	2R_6976287_INS [dm3] 2R_11088782_INS [dm6]	A	ATACACA	2.164e^-6	0.315	DOWNSTREAM CG43188 INTRON luna
3R	14626440	3R_14626440_SNP [dm3] 3R_18800718_SNP [dm6]	G	C	2.245e^-6	0.315	UTR_3_PRIME CG18208
2L	8892181	2L_8892181_SNP [dm3] 2L_8892181_SNP [dm6]	C	T	2.925e^-6	0.315	DOWNSTREAM CG42713 INTERGENIC
2L	12226680	2L_12226680_SNP [dm3] 2L_12226680_SNP [dm6]	G	T	3.210e^-6	0.315	INTRON aret
2L	12226681	2L_12226681_SNP [dm3] 2L_12226681_SNP [dm6]	G	T	3.210e^-6	0.315	INTRON aret
2L	8891353	2L_8891353_SNP [dm3] 2L_8891353_SNP [dm6]	T	G	3.282e^-6	0.315	UPSTREAM CG42713 INTERGENIC
3L	16334434	3L_16334434_SNP [dm3] 3L_16341334_SNP [dm6]	A	C	3.341e^-6	0.315	SYNONYMOUS_CODING CG4998	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8890918	2L_8890918_SNP [dm3] 2L_8890918_SNP [dm6]	G	A	3.450e^-6	0.315	UPSTREAM CG42713 INTERGENIC
2L	12147885	2L_12147885_SNP [dm3] 2L_12147885_SNP [dm6]	C	T	3.506e^-6	0.315	INTRON CG31760
3L	16334602	3L_16334602_SNP [dm3] 3L_16341502_SNP [dm6]	T	C	3.664e^-6	0.315	SYNONYMOUS_CODING CG4998	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18436654	2R_18436654_SNP [dm3] 2R_22549149_SNP [dm6]	C	A	3.761e^-6	0.315	UPSTREAM CG6018 INTRON px
2L	10426736	2L_10426736_INS [dm3] 2L_10426736_INS [dm6]	T	TGTT	3.883e^-6	0.315	UPSTREAM KdelR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	19297289	X_19297289_SNP [dm3] X_19403256_SNP [dm6]	G	A	3.945e^-6	0.315	INTRON kek5
3R	13271279	3R_13271279_SNP [dm3] 3R_17445557_SNP [dm6]	A	T	4.165e^-6	0.315	INTRON CG5873
X	10381386	X_10381386_SNP [dm3] X_10487353_SNP [dm6]	C	A	4.194e^-6	0.315	UPSTREAM CG32687 INTERGENIC
3L	9646361	3L_9646361_SNP [dm3] 3L_9653261_SNP [dm6]	G	T	4.491e^-6	0.324	INTRON fry & 1 other
X	9497046	X_9497046_SNP [dm3] X_9603013_SNP [dm6]	T	A	4.682e^-6	0.324	SYNONYMOUS_CODING Gga	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11594068	3R_11594068_SNP [dm3] 3R_15768346_SNP [dm6]	A	G	4.902e^-6	0.324	UPSTREAM CG5623 INTERGENIC
3R	6478421	3R_6478421_SNP [dm3] 3R_10652699_SNP [dm6]	G	A	5.705e^-6	0.324	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	6478427	3R_6478427_SNP [dm3] 3R_10652705_SNP [dm6]	T	C	5.705e^-6	0.324	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	7407114	X_7407114_SNP [dm3] X_7513081_SNP [dm6]	T	G	6.157e^-6	0.324	INTRON CG32719
3L	16333699	3L_16333699_SNP [dm3] 3L_16340599_SNP [dm6]	G	A	6.315e^-6	0.324	SYNONYMOUS_CODING CG4998	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16553942	3L_16553942_SNP [dm3] 3L_16560842_SNP [dm6]	C	A	6.345e^-6	0.324	INTERGENIC
2L	12202139	2L_12202139_SNP [dm3] 2L_12202139_SNP [dm6]	C	T	6.638e^-6	0.324	INTRON aret
2R	14626277	2R_14626277_SNP [dm3] 2R_18738772_SNP [dm6]	C	G	6.682e^-6	0.324	NON_SYNONYMOUS_CODING CG33998 DOWNSTREAM CR30121 INTRON Hs3st-A
3L	3491918	3L_3491918_SNP [dm3] 3L_3491918_SNP [dm6]	G	A	7.069e^-6	0.324	INTRON CG42324
2R	12342361	2R_12342361_SNP [dm3] 2R_16454856_SNP [dm6]	C	G	7.312e^-6	0.324	INTERGENIC
X	9622010	X_9622010_SNP [dm3] X_9727977_SNP [dm6]	T	G	7.426e^-6	0.324	EXON CR43498	TF binding site BDTNP1_TFBS_dl
3R	5013334	3R_5013334_SNP [dm3] 3R_9187612_SNP [dm6]	G	A	7.734e^-6	0.324	INTRON pum	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4313712	3L_4313712_SNP [dm3] 3L_4313712_SNP [dm6]	C	T	7.804e^-6	0.324	SYNONYMOUS_CODING Claspin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	1266966	3R_1266966_SNP [dm3] 3R_5441244_SNP [dm6]	C	T	7.836e^-6	0.324	INTRON CG14669
3L	9484303	3L_9484303_SNP [dm3] 3L_9491203_SNP [dm6]	T	G	8.069e^-6	0.324	INTRON CG32037	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	6469464	3R_6469464_SNP [dm3] 3R_10643742_SNP [dm6]	G	C	8.088e^-6	0.324	EXON CR44018	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	5251757	X_5251757_SNP [dm3] X_5357724_SNP [dm6]	C	T	8.094e^-6	0.324	UPSTREAM SK INTRON SK
2R	15654591	2R_15654591_SNP [dm3] 2R_19767086_SNP [dm6]	G	C	8.121e^-6	0.324	UPSTREAM 5SrRNA:CR33353 INTERGENIC
3R	6094576	3R_6094576_SNP [dm3] 3R_10268854_SNP [dm6]	G	T	8.202e^-6	0.324	INTRON CG43143	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	9497043	X_9497043_SNP [dm3] X_9603010_SNP [dm6]	G	A	8.359e^-6	0.324	SYNONYMOUS_CODING Gga	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	7462458	3R_7462458_SNP [dm3] 3R_11636736_SNP [dm6]	G	A	8.839e^-6	0.324	SYNONYMOUS_CODING Csk UPSTREAM CR44137	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6012950	3R_6012950_SNP [dm3] 3R_10187228_SNP [dm6]	C	T	8.943e^-6	0.324	INTRON CG12814
3R	6478481	3R_6478481_SNP [dm3] 3R_10652759_SNP [dm6]	T	C	8.956e^-6	0.324	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	6478485	3R_6478485_INS [dm3] 3R_10652763_INS [dm6]	A	GC	8.956e^-6	0.324	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	1679278	3L_1679278_SNP [dm3] 3L_1679278_SNP [dm6]	A	C	9.138e^-6	0.324	INTRON CG7991
3R	6501185	3R_6501185_SNP [dm3] 3R_10675463_SNP [dm6]	T	A	9.254e^-6	0.324	DOWNSTREAM CG6465 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2L	8890113	2L_8890113_SNP [dm3] 2L_8890113_SNP [dm6]	T	G	9.499e^-6	0.324	INTERGENIC
3L	3842852	3L_3842852_SNP [dm3] 3L_3842852_SNP [dm6]	T	A	9.634e^-6	0.324	DOWNSTREAM enc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
2R	15086854	2R_15086854_SNP [dm3] 2R_19199349_SNP [dm6]	C	G	9.661e^-6	0.324	INTRON hppy
2L	12388049	2L_12388049_SNP [dm3] 2L_12388049_SNP [dm6]	T	C	1.017e^-5	0.335	INTRON bru-2
3L	21472359	3L_21472359_DEL [dm3] 3L_21479259_DEL [dm6]	CC	C	1.036e^-5	0.335	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	4815832	3R_4815832_SNP [dm3] 3R_8990110_SNP [dm6]	G	A	1.103e^-5	0.35	SYNONYMOUS_CODING CG11970 DOWNSTREAM E_var_3-9
2R	7017096	2R_7017096_SNP [dm3] 2R_11129591_SNP [dm6]	C	T	1.139e^-5	0.35	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	5995489	3R_5995489_SNP [dm3] 3R_10169767_SNP [dm6]	G	T	1.176e^-5	0.35	INTRON Best1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	8885223	2L_8885223_SNP [dm3] 2L_8885223_SNP [dm6]	G	T	1.179e^-5	0.35	INTERGENIC
3R	4818934	3R_4818934_SNP [dm3] 3R_8993212_SNP [dm6]	G	A	1.203e^-5	0.35	UPSTREAM CG11975 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	5162097	3R_5162097_SNP [dm3] 3R_9336375_SNP [dm6]	T	C	1.203e^-5	0.35	INTRON CG8121
3R	6014373	3R_6014373_SNP [dm3] 3R_10188651_SNP [dm6]	T	A	1.212e^-5	0.35	INTRON CG12814
3R	11594134	3R_11594134_SNP [dm3] 3R_15768412_SNP [dm6]	C	T	1.238e^-5	0.352	UPSTREAM CG5623 INTERGENIC
X	9868764	X_9868764_SNP [dm3] X_9974731_SNP [dm6]	G	A	1.357e^-5	0.353	INTRON CG43386
2L	8890163	2L_8890163_INS [dm3] 2L_8890163_INS [dm6]	T	TTCTA	1.367e^-5	0.353	INTERGENIC
2R	18907121	2R_18907121_SNP [dm3] 2R_23019598_SNP [dm6]	A	T	1.382e^-5	0.353	INTRON twi & 1 other
2L	7627931	2L_7627931_DEL [dm3] 2L_7627931_DEL [dm6]	GGC	G	1.424e^-5	0.353	INTERGENIC	TF binding site mE1_TFBS_sens
3R	11594071	3R_11594071_SNP [dm3] 3R_15768349_SNP [dm6]	T	C	1.437e^-5	0.353	UPSTREAM CG5623 INTERGENIC
2L	8889335	2L_8889335_SNP [dm3] 2L_8889335_SNP [dm6]	A	T	1.474e^-5	0.353	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
2L	12202242	2L_12202242_SNP [dm3] 2L_12202242_SNP [dm6]	T	A	1.500e^-5	0.353	INTRON aret
3R	16175110	3R_16175110_SNP [dm3] 3R_20349388_SNP [dm6]	C	T	1.500e^-5	0.353	INTERGENIC
2L	5064085	2L_5064085_SNP [dm3] 2L_5064085_SNP [dm6]	T	C	1.508e^-5	0.353	UPSTREAM qtc & 1 other INTRON qtc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	6014393	3R_6014393_SNP [dm3] 3R_10188671_SNP [dm6]	A	C	1.517e^-5	0.353	INTRON CG12814
3L	8798491	3L_8798491_SNP [dm3] 3L_8805391_SNP [dm6]	C	T	1.523e^-5	0.353	SYNONYMOUS_CODING CG34427 DOWNSTREAM CG13312	TF binding site mE1_TFBS_chinmo
2R	15587692	2R_15587692_SNP [dm3] 2R_19700187_SNP [dm6]	C	T	1.539e^-5	0.353	NON_SYNONYMOUS_CODING Obp56c UPSTREAM Obp56b	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	9993334	3L_9993334_SNP [dm3] 3L_10000234_SNP [dm6]	C	A	1.545e^-5	0.353	INTRON dpr6
2L	8893686	2L_8893686_SNP [dm3] 2L_8893686_SNP [dm6]	G	A	1.561e^-5	0.353	INTERGENIC
3L	20540759	3L_20540759_DEL [dm3] 3L_20547659_DEL [dm6]	CG	T	1.622e^-5	0.353	INTERGENIC
3R	6538718	3R_6538718_SNP [dm3] 3R_10712996_SNP [dm6]	A	T	1.651e^-5	0.353	INTERGENIC
X	10443035	X_10443035_SNP [dm3] X_10549002_SNP [dm6]	C	T	1.658e^-5	0.353	INTRON spri
2L	10873518	2L_10873518_SNP [dm3] 2L_10873518_SNP [dm6]	A	G	1.660e^-5	0.353	INTERGENIC
2L	8890162	2L_8890162_SNP [dm3] 2L_8890162_SNP [dm6]	A	G	1.756e^-5	0.353	INTERGENIC
3R	4817263	3R_4817263_SNP [dm3] 3R_8991541_SNP [dm6]	G	T	1.760e^-5	0.353	NON_SYNONYMOUS_CODING E_var_3-9 DOWNSTREAM CG11970
3R	6011219	3R_6011219_SNP [dm3] 3R_10185497_SNP [dm6]	A	G	1.771e^-5	0.353	INTRON CG12814
X	10440823	X_10440823_SNP [dm3] X_10546790_SNP [dm6]	A	G	1.791e^-5	0.353	UPSTREAM spri INTRON spri	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	10441001	X_10441001_SNP [dm3] X_10546968_SNP [dm6]	G	A	1.791e^-5	0.353	UPSTREAM spri INTRON spri	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5238270	3L_5238270_SNP [dm3] 3L_5245170_SNP [dm6]	A	G	1.847e^-5	0.353	INTRON shep
2L	2373193	2L_2373193_SNP [dm3] 2L_2373193_SNP [dm6]	G	A	1.847e^-5	0.353	SYNONYMOUS_CODING CG3609	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	15579895	X_15579895_SNP [dm3] X_15685862_SNP [dm6]	A	T	1.905e^-5	0.353	NON_SYNONYMOUS_CODING CG15599	TF binding site BDTNP1_TFBS_prd mE1_TFBS_sens
2L	8888880	2L_8888880_DEL [dm3] 2L_8888880_DEL [dm6]	CCCTCAAAATCCTTATAAAG...	C	1.913e^-5	0.353	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
2L	8888986	2L_8888986_SNP [dm3] 2L_8888986_SNP [dm6]	A	T	1.913e^-5	0.353	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
2L	8889165	2L_8889165_SNP [dm3] 2L_8889165_SNP [dm6]	T	C	1.927e^-5	0.353	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
2L	13283596	2L_13283596_SNP [dm3] 2L_13283596_SNP [dm6]	C	G	1.930e^-5	0.353	UTR_3_PRIME CG44085 DOWNSTREAM Drep-4
2L	8888944	2L_8888944_DEL [dm3] 2L_8888944_DEL [dm6]	CAT	C	1.933e^-5	0.353	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
3R	6320297	3R_6320297_SNP [dm3] 3R_10494575_SNP [dm6]	G	T	1.941e^-5	0.353	INTERGENIC
3R	6478518	3R_6478518_SNP [dm3] 3R_10652796_SNP [dm6]	A	G	1.961e^-5	0.353	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	13230934	2L_13230934_SNP [dm3] 2L_13230934_SNP [dm6]	C	G	1.967e^-5	0.353	DOWNSTREAM CG16815 INTERGENIC	TF binding site BDTNP1_TFBS_hb
2L	8888053	2L_8888053_SNP [dm3] 2L_8888053_SNP [dm6]	T	A	1.973e^-5	0.353	UPSTREAM CR44415 INTERGENIC	TF binding site mE1_TFBS_cad
2L	10503149	2L_10503149_SNP [dm3] 2L_10503149_SNP [dm6]	A	C	1.977e^-5	0.353	INTRON Myo31DF
3R	4450196	3R_4450196_SNP [dm3] 3R_8624474_SNP [dm6]	C	G	1.981e^-5	0.353	INTRON 5-HT2B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14537669	2L_14537669_DEL [dm3] 2L_14537669_DEL [dm6]	AGATTTATATTGATAACTTA...	A	1.986e^-5	0.353	INTERGENIC	TF binding site mE1_TFBS_Ubx
2L	4279298	2L_4279298_SNP [dm3] 2L_4279298_SNP [dm6]	T	C	2.028e^-5	0.353	UTR_5_PRIME Art2	TF binding site BDTNP1_TFBS_dl
2L	8889906	2L_8889906_SNP [dm3] 2L_8889906_SNP [dm6]	G	A	2.063e^-5	0.353	INTERGENIC
2L	7808303	2L_7808303_SNP [dm3] 2L_7808303_SNP [dm6]	T	A	2.082e^-5	0.353	INTRON cdc14	TF binding site mE1_TFBS_HSA
3R	15369049	3R_15369049_SNP [dm3] 3R_19543327_SNP [dm6]	G	A	2.088e^-5	0.353	INTRON Dys
3L	13251989	3L_13251989_SNP [dm3] 3L_13258889_SNP [dm6]	A	G	2.100e^-5	0.353	INTRON caps
2L	1190339	2L_1190339_SNP [dm3] 2L_1190339_SNP [dm6]	C	T	2.158e^-5	0.353	INTRON CG5001
2L	8888907	2L_8888907_SNP [dm3] 2L_8888907_SNP [dm6]	A	G	2.168e^-5	0.353	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
2L	3515434	2L_3515434_SNP [dm3] 2L_3515434_SNP [dm6]	A	T	2.184e^-5	0.353	UPSTREAM CG33123 INTRON CG17593	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	6377929	3R_6377929_SNP [dm3] 3R_10552207_SNP [dm6]	A	C	2.196e^-5	0.353	INTRON hth
2R	16495095	2R_16495095_SNP [dm3] 2R_20607590_SNP [dm6]	T	G	2.202e^-5	0.353	DOWNSTREAM bl INTRON Hil	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15305916	2L_15305916_SNP [dm3] 2L_15305916_SNP [dm6]	G	A	2.211e^-5	0.353	INTERGENIC
2L	8888771	2L_8888771_SNP [dm3] 2L_8888771_SNP [dm6]	T	A	2.248e^-5	0.353	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	10873512	2L_10873512_SNP [dm3] 2L_10873512_SNP [dm6]	A	T	2.264e^-5	0.353	INTERGENIC
3L	10023323	3L_10023323_SNP [dm3] 3L_10030223_SNP [dm6]	A	T	2.288e^-5	0.353	UPSTREAM CR45155 INTRON dpr6
2L	17640282	2L_17640282_SNP [dm3] 2L_17640282_SNP [dm6]	C	T	2.293e^-5	0.353	INTERGENIC
3L	3283510	3L_3283510_SNP [dm3] 3L_3283510_SNP [dm6]	A	C	2.341e^-5	0.353	INTRON CG12017
2L	7536026	2L_7536026_SNP [dm3] 2L_7536026_SNP [dm6]	C	G	2.387e^-5	0.353	INTRON RapGAP1	TF binding site mE1_TFBS_cad
2L	3514792	2L_3514792_SNP [dm3] 2L_3514792_SNP [dm6]	C	T	2.388e^-5	0.353	UPSTREAM CG17593 & 1 other INTERGENIC
2L	4503748	2L_4503748_SNP [dm3] 2L_4503748_SNP [dm6]	T	C	2.400e^-5	0.353	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10574770	2L_10574770_SNP [dm3] 2L_10574770_SNP [dm6]	C	T	2.412e^-5	0.353	INTRON Trim9
2L	4457560	2L_4457560_DEL [dm3] 2L_4457560_DEL [dm6]	GG	G	2.435e^-5	0.353	UPSTREAM Gs1l DOWNSTREAM snoRNA:Me18S-C1831 INTRON RpL27A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	6011063	3R_6011063_SNP [dm3] 3R_10185341_SNP [dm6]	T	C	2.436e^-5	0.353	INTRON CG12814	TF binding site mE1_TFBS_inv
3R	6464772	3R_6464772_SNP [dm3] 3R_10639050_SNP [dm6]	G	A	2.440e^-5	0.353	UTR_5_PRIME hth UPSTREAM CR44018	TF binding site BDTNP1_TFBS_dl
2L	4503817	2L_4503817_SNP [dm3] 2L_4503817_SNP [dm6]	T	C	2.442e^-5	0.353	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16336240	3L_16336240_SNP [dm3] 3L_16343140_SNP [dm6]	T	C	2.488e^-5	0.353	NON_SYNONYMOUS_CODING CG4998 INTRON CG4998	TF binding site mE1_TFBS_cad
3L	21375865	3L_21375865_DEL [dm3] 3L_21382765_DEL [dm6]	AACG	C	2.497e^-5	0.353	UTR_5_PRIME rgn
3L	19439891	3L_19439891_SNP [dm3] 3L_19446791_SNP [dm6]	G	A	2.508e^-5	0.353	UPSTREAM Chd3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	5015794	2L_5015794_SNP [dm3] 2L_5015794_SNP [dm6]	A	T	2.576e^-5	0.353	SYNONYMOUS_CODING vkg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8888091	2L_8888091_SNP [dm3] 2L_8888091_SNP [dm6]	G	T	2.603e^-5	0.353	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	8888925	2L_8888925_DEL [dm3] 2L_8888925_DEL [dm6]	AC	A	2.631e^-5	0.353	UPSTREAM CR44415 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
2L	8888928	2L_8888928_DEL [dm3] 2L_8888928_DEL [dm6]	AAATAAAGG	A	2.631e^-5	0.353	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
X	9342606	X_9342606_SNP [dm3] X_9448573_SNP [dm6]	T	A	2.638e^-5	0.353	INTRON mgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	3325869	3L_3325869_SNP [dm3] 3L_3325869_SNP [dm6]	C	T	2.647e^-5	0.353	UTR_5_PRIME CG11526 UPSTREAM PHGPx INTRON CG11526	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1190337	2L_1190337_SNP [dm3] 2L_1190337_SNP [dm6]	T	A	2.658e^-5	0.353	INTRON CG5001
2R	9955561	2R_9955561_SNP [dm3] 2R_14068056_SNP [dm6]	T	A	2.681e^-5	0.353	INTRON Prosap
X	5589567	X_5589567_SNP [dm3] X_5695534_SNP [dm6]	T	A	2.683e^-5	0.353	UPSTREAM CG3149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9974637	2R_9974637_SNP [dm3] 2R_14087132_SNP [dm6]	C	T	2.723e^-5	0.353	INTRON Prosap
3R	6478496	3R_6478496_INS [dm3] 3R_10652774_INS [dm6]	A	AAAAACCTATGGAAAATTAC...	2.725e^-5	0.353	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	20942798	X_20942798_SNP [dm3] X_21071771_SNP [dm6]	A	G	2.730e^-5	0.353	INTRON bves	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12188129	2L_12188129_SNP [dm3] 2L_12188129_SNP [dm6]	C	A	2.749e^-5	0.353	INTRON aret
2R	12601886	2R_12601886_SNP [dm3] 2R_16714381_SNP [dm6]	G	C	2.782e^-5	0.353	INTRON CG30463
2R	18434386	2R_18434386_SNP [dm3] 2R_22546881_SNP [dm6]	T	C	2.805e^-5	0.353	UPSTREAM px INTRON px	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5589661	X_5589661_SNP [dm3] X_5695628_SNP [dm6]	T	C	2.874e^-5	0.353	UPSTREAM CG3149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	11594109	3R_11594109_SNP [dm3] 3R_15768387_SNP [dm6]	A	T	2.875e^-5	0.353	UPSTREAM CG5623 INTERGENIC
2L	10873577	2L_10873577_SNP [dm3] 2L_10873577_SNP [dm6]	T	C	2.929e^-5	0.353	INTERGENIC
3R	13959175	3R_13959175_SNP [dm3] 3R_18133453_SNP [dm6]	T	A	2.935e^-5	0.353	UTR_3_PRIME sr
3L	14062871	3L_14062871_SNP [dm3] 3L_14069771_SNP [dm6]	A	G	2.951e^-5	0.353	INTRON CG32138
3L	19439872	3L_19439872_SNP [dm3] 3L_19446772_SNP [dm6]	G	A	2.980e^-5	0.353	UPSTREAM Chd3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	15338050	2L_15338050_SNP [dm3] 2L_15338050_SNP [dm6]	T	A	2.988e^-5	0.353	INTERGENIC	TF binding site mE1_TFBS_cad
2L	8888786	2L_8888786_SNP [dm3] 2L_8888786_SNP [dm6]	C	A	2.991e^-5	0.353	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	8888879	2L_8888879_SNP [dm3] 2L_8888879_SNP [dm6]	C	T	2.999e^-5	0.353	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
3R	16175101	3R_16175101_SNP [dm3] 3R_20349379_SNP [dm6]	T	C	3.040e^-5	0.353	INTERGENIC
2L	10519824	2L_10519824_SNP [dm3] 2L_10519824_SNP [dm6]	C	T	3.041e^-5	0.353	DOWNSTREAM Lrr47 INTERGENIC
X	9023539	X_9023539_SNP [dm3] X_9129506_SNP [dm6]	C	A	3.050e^-5	0.353	INTRON fend	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14062589	3L_14062589_SNP [dm3] 3L_14069489_SNP [dm6]	C	T	3.114e^-5	0.353	INTRON CG32138
2L	16800591	2L_16800591_SNP [dm3] 2L_16800591_SNP [dm6]	G	A	3.121e^-5	0.353	INTRON Ugt36Bc	TF binding site mE1_TFBS_cad
3L	302483	3L_302483_SNP [dm3] 3L_302483_SNP [dm6]	C	A	3.142e^-5	0.353	SYNONYMOUS_CODING RhoGEF3	TF binding site mE1_TFBS_HSA
2L	7634265	2L_7634265_SNP [dm3] 2L_7634265_SNP [dm6]	T	C	3.173e^-5	0.353	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	7147859	3L_7147859_SNP [dm3] 3L_7154759_SNP [dm6]	T	C	3.174e^-5	0.353	INTRON corn	TF binding site BDTNP1_TFBS_twi
3L	4413574	3L_4413574_SNP [dm3] 3L_4413574_SNP [dm6]	A	C	3.177e^-5	0.353	UPSTREAM DOR INTRON DOR	TF binding site BDTNP1_TFBS_hb
3R	15369087	3R_15369087_SNP [dm3] 3R_19543365_SNP [dm6]	A	G	3.181e^-5	0.353	INTRON Dys
X	17578684	X_17578684_SNP [dm3] X_17684651_SNP [dm6]	T	G	3.193e^-5	0.353	SYNONYMOUS_CODING chas
3L	302568	3L_302568_SNP [dm3] 3L_302568_SNP [dm6]	C	T	3.206e^-5	0.353	INTRON RhoGEF3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5752344	3R_5752344_SNP [dm3] 3R_9926622_SNP [dm6]	G	T	3.230e^-5	0.353	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	6472567	3R_6472567_SNP [dm3] 3R_10646845_SNP [dm6]	G	A	3.233e^-5	0.353	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
2L	5971092	2L_5971092_SNP [dm3] 2L_5971092_SNP [dm6]	C	T	3.248e^-5	0.353	UPSTREAM CR43465 DOWNSTREAM Ucp4B INTERGENIC	TF binding site mE1_TFBS_cad
3R	6046672	3R_6046672_SNP [dm3] 3R_10220950_SNP [dm6]	T	C	3.287e^-5	0.353	UTR_3_PRIME Syn
2L	8885281	2L_8885281_DEL [dm3] 2L_8885281_DEL [dm6]	AATCACCCGAAGTGTTCCAT...	A	3.352e^-5	0.353	INTERGENIC
X	3088659	X_3088659_SNP [dm3] X_3194626_SNP [dm6]	G	A	3.360e^-5	0.353	INTRON dnc
2L	7627877	2L_7627877_SNP [dm3] 2L_7627877_SNP [dm6]	A	C	3.384e^-5	0.353	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11062974	2L_11062974_SNP [dm3] 2L_11062974_SNP [dm6]	T	C	3.390e^-5	0.353	INTRON Samuel
2L	8888827	2L_8888827_SNP [dm3] 2L_8888827_SNP [dm6]	A	G	3.403e^-5	0.353	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	9500007	2L_9500007_SNP [dm3] 2L_9500007_SNP [dm6]	C	T	3.439e^-5	0.353	INTRON CG33298
3R	5227901	3R_5227901_SNP [dm3] 3R_9402179_SNP [dm6]	C	T	3.441e^-5	0.353	SYNONYMOUS_CODING CG8132 UPSTREAM RpL34b DOWNSTREAM CG9356	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5962254	2L_5962254_SNP [dm3] 2L_5962254_SNP [dm6]	A	C	3.444e^-5	0.353	DOWNSTREAM psd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10873588	2L_10873588_SNP [dm3] 2L_10873588_SNP [dm6]	T	C	3.469e^-5	0.353	INTERGENIC
3R	6480564	3R_6480564_SNP [dm3] 3R_10654842_SNP [dm6]	C	T	3.469e^-5	0.353	INTERGENIC
X	5919681	X_5919681_SNP [dm3] X_6025648_SNP [dm6]	T	G	3.470e^-5	0.353	INTERGENIC
X	5919683	X_5919683_SNP [dm3] X_6025650_SNP [dm6]	G	A	3.470e^-5	0.353	INTERGENIC
X	5919699	X_5919699_SNP [dm3] X_6025666_SNP [dm6]	A	C	3.470e^-5	0.353	INTERGENIC
2L	8890159	2L_8890159_SNP [dm3] 2L_8890159_SNP [dm6]	A	T	3.485e^-5	0.353	INTERGENIC
X	5919707	X_5919707_SNP [dm3] X_6025674_SNP [dm6]	G	T	3.506e^-5	0.354	INTERGENIC
X	5251741	X_5251741_SNP [dm3] X_5357708_SNP [dm6]	G	T	3.557e^-5	0.357	UPSTREAM SK INTRON SK
X	3248686	X_3248686_DEL [dm3] X_3354653_DEL [dm6]	TTGTATCT	T	3.577e^-5	0.357	INTERGENIC
X	9497052	X_9497052_SNP [dm3] X_9603019_SNP [dm6]	T	G	3.596e^-5	0.357	SYNONYMOUS_CODING Gga	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17978473	2R_17978473_SNP [dm3] 2R_22090968_SNP [dm6]	A	G	3.682e^-5	0.357	SPLICE_SITE_REGION CG44163 UPSTREAM CG43393 DOWNSTREAM CG11073 INTRON CG44163
3R	5951203	3R_5951203_SNP [dm3] 3R_10125481_SNP [dm6]	A	G	3.684e^-5	0.357	UTR_5_PRIME knk DOWNSTREAM tws
3R	6320296	3R_6320296_SNP [dm3] 3R_10494574_SNP [dm6]	G	A	3.689e^-5	0.357	INTERGENIC
3L	7628042	3L_7628042_SNP [dm3] 3L_7634942_SNP [dm6]	C	A	3.700e^-5	0.357	INTRON CG33275	TF binding site mE1_TFBS_HSA
2R	18434461	2R_18434461_SNP [dm3] 2R_22546956_SNP [dm6]	A	G	3.717e^-5	0.357	UPSTREAM px INTRON px	TF binding site BDTNP1_TFBS_dl
2L	3061074	2L_3061074_SNP [dm3] 2L_3061074_SNP [dm6]	C	T	3.718e^-5	0.357	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2709813	2L_2709813_SNP [dm3] 2L_2709813_SNP [dm6]	G	C	3.728e^-5	0.357	INTRON CG31690
2L	8888833	2L_8888833_SNP [dm3] 2L_8888833_SNP [dm6]	G	A	3.745e^-5	0.357	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2R	14522799	2R_14522799_SNP [dm3] 2R_18635294_SNP [dm6]	G	A	3.789e^-5	0.359	INTRON CG30122	TF binding site BDTNP1_TFBS_dl
3R	6390924	3R_6390924_SNP [dm3] 3R_10565202_SNP [dm6]	A	G	3.954e^-5	0.371	INTRON hth
2L	3082821	2L_3082821_SNP [dm3] 2L_3082821_SNP [dm6]	G	A	3.970e^-5	0.371	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3514784	2L_3514784_SNP [dm3] 2L_3514784_SNP [dm6]	G	A	3.986e^-5	0.371	UPSTREAM CG17593 & 1 other INTERGENIC
3R	5151494	3R_5151494_SNP [dm3] 3R_9325772_SNP [dm6]	A	T	4.004e^-5	0.371	INTRON CG8861
3L	3951594	3L_3951594_SNP [dm3] 3L_3951594_SNP [dm6]	T	A	4.067e^-5	0.371	INTRON CG14984
X	5848411	X_5848411_SNP [dm3] X_5954378_SNP [dm6]	A	T	4.079e^-5	0.371	DOWNSTREAM CG6048 INTERGENIC
2R	14462349	2R_14462349_SNP [dm3] 2R_18574844_SNP [dm6]	G	A	4.106e^-5	0.371	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8891550	2L_8891550_SNP [dm3] 2L_8891550_SNP [dm6]	C	T	4.119e^-5	0.371	NON_SYNONYMOUS_CODING CG42713
3L	21437983	3L_21437983_SNP [dm3] 3L_21444883_SNP [dm6]	G	A	4.122e^-5	0.371	UPSTREAM CG5656 & 1 other INTERGENIC
3L	3283505	3L_3283505_SNP [dm3] 3L_3283505_SNP [dm6]	T	C	4.128e^-5	0.371	INTRON CG12017
3L	3492624	3L_3492624_SNP [dm3] 3L_3492624_SNP [dm6]	C	A	4.139e^-5	0.371	INTRON CG42324
3L	3200503	3L_3200503_SNP [dm3] 3L_3200503_SNP [dm6]	T	A	4.164e^-5	0.371	INTRON gry	TF binding site mE1_TFBS_sens
2R	14060614	2R_14060614_SNP [dm3] 2R_18173109_SNP [dm6]	C	T	4.170e^-5	0.371	UPSTREAM Dgp-1 & 1 other EXON CR45315	TF binding site BDTNP1_TFBS_dl
2L	10873515	2L_10873515_SNP [dm3] 2L_10873515_SNP [dm6]	A	T	4.216e^-5	0.373	INTERGENIC
2L	10873469	2L_10873469_SNP [dm3] 2L_10873469_SNP [dm6]	G	T	4.252e^-5	0.374	INTERGENIC
2L	8886011	2L_8886011_SNP [dm3] 2L_8886011_SNP [dm6]	A	T	4.328e^-5	0.379	DOWNSTREAM CR44415 INTERGENIC
2L	520743	2L_520743_SNP [dm3] 2L_520743_SNP [dm6]	C	T	4.377e^-5	0.382	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
X	14693012	X_14693012_SNP [dm3] X_14798979_SNP [dm6]	A	C	4.422e^-5	0.384	NON_SYNONYMOUS_CODING rut	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5919749	X_5919749_SNP [dm3] X_6025716_SNP [dm6]	T	C	4.494e^-5	0.385	INTERGENIC
3R	23209567	3R_23209567_SNP [dm3] 3R_27383845_SNP [dm6]	A	T	4.522e^-5	0.385	INTRON side
2L	8886772	2L_8886772_SNP [dm3] 2L_8886772_SNP [dm6]	C	A	4.536e^-5	0.385	DOWNSTREAM CR44415 INTERGENIC	TF binding site mE1_TFBS_cnc
2L	9499985	2L_9499985_SNP [dm3] 2L_9499985_SNP [dm6]	C	G	4.564e^-5	0.385	INTRON CG33298
2L	8889159	2L_8889159_SNP [dm3] 2L_8889159_SNP [dm6]	A	T	4.596e^-5	0.385	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
X	5251766	X_5251766_SNP [dm3] X_5357733_SNP [dm6]	C	T	4.616e^-5	0.385	UPSTREAM SK INTRON SK
3L	3791730	3L_3791730_SNP [dm3] 3L_3791730_SNP [dm6]	G	A	4.617e^-5	0.385	DOWNSTREAM CG32266 INTRON CG32264	TF binding site mE1_TFBS_HSA
X	8429766	X_8429766_SNP [dm3] X_8535733_SNP [dm6]	A	T	4.626e^-5	0.385	INTRON Nrg
2L	13230762	2L_13230762_SNP [dm3] 2L_13230762_SNP [dm6]	A	G	4.627e^-5	0.385	DOWNSTREAM CG16815 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	16264777	3R_16264777_SNP [dm3] 3R_20439055_SNP [dm6]	A	C	4.654e^-5	0.385	INTRON Gfrl
X	5251777	X_5251777_SNP [dm3] X_5357744_SNP [dm6]	G	C	4.664e^-5	0.385	UPSTREAM SK INTRON SK
2L	7538448	2L_7538448_SNP [dm3] 2L_7538448_SNP [dm6]	C	T	4.701e^-5	0.387	INTRON RapGAP1
2R	12710555	2R_12710555_SNP [dm3] 2R_16823050_SNP [dm6]	A	T	4.790e^-5	0.389	INTERGENIC
X	5590589	X_5590589_SNP [dm3] X_5696556_SNP [dm6]	T	C	4.820e^-5	0.389	UPSTREAM CR42794 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	12722960	X_12722960_SNP [dm3] X_12828927_SNP [dm6]	G	T	4.823e^-5	0.389	INTRON Pde9
2L	9127690	2L_9127690_SNP [dm3] 2L_9127690_SNP [dm6]	T	C	4.824e^-5	0.389	INTRON CG32982	TF binding site BDTNP1_TFBS_dl
2L	6888563	2L_6888563_SNP [dm3] 2L_6888563_SNP [dm6]	G	C	4.865e^-5	0.389	INTRON Nlg2	TF binding site mE1_TFBS_chinmo
2L	16800595	2L_16800595_SNP [dm3] 2L_16800595_SNP [dm6]	T	G	4.904e^-5	0.389	INTRON Ugt36Bc	TF binding site mE1_TFBS_cad
2L	8888978	2L_8888978_SNP [dm3] 2L_8888978_SNP [dm6]	A	G	4.914e^-5	0.389	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
2L	13331781	2L_13331781_SNP [dm3] 2L_13331781_SNP [dm6]	T	C	4.940e^-5	0.389	UPSTREAM CG43778 INTERGENIC
X	16748083	X_16748083_SNP [dm3] X_16854050_SNP [dm6]	C	G	4.967e^-5	0.389	UPSTREAM CG13003 INTRON CG13003
2L	8885068	2L_8885068_SNP [dm3] 2L_8885068_SNP [dm6]	G	A	4.977e^-5	0.389	INTERGENIC
2R	12342345	2R_12342345_SNP [dm3] 2R_16454840_SNP [dm6]	C	A	4.996e^-5	0.389	INTERGENIC
2L	11490584	2L_11490584_SNP [dm3] 2L_11490584_SNP [dm6]	C	A	5.023e^-5	0.389	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	10503131	2L_10503131_SNP [dm3] 2L_10503131_SNP [dm6]	T	C	5.029e^-5	0.389	INTRON Myo31DF
3L	8908962	3L_8908962_SNP [dm3] 3L_8915862_SNP [dm6]	C	T	5.035e^-5	0.389	DOWNSTREAM CR43970 INTRON Tsp66E
X	15753820	X_15753820_SNP [dm3] X_15859787_SNP [dm6]	T	A	5.064e^-5	0.389	UPSTREAM Gbeta13F & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	14538403	2L_14538403_SNP [dm3] 2L_14538403_SNP [dm6]	T	A	5.111e^-5	0.389	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	4793654	3R_4793654_SNP [dm3] 3R_8967932_SNP [dm6]	C	A	5.131e^-5	0.389	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	5304082	3R_5304082_SNP [dm3] 3R_9478360_SNP [dm6]	C	A	5.135e^-5	0.389	INTRON CG16779
3R	5997082	3R_5997082_SNP [dm3] 3R_10171360_SNP [dm6]	C	G	5.140e^-5	0.389	UTR_3_PRIME CG12814 UPSTREAM Best1	TF binding site BDTNP1_TFBS_dl
3L	11789236	3L_11789236_SNP [dm3] 3L_11796136_SNP [dm6]	T	C	5.168e^-5	0.389	SYNONYMOUS_CODING Klp68D DOWNSTREAM CG10907	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12177229	2L_12177229_SNP [dm3] 2L_12177229_SNP [dm6]	G	T	5.183e^-5	0.389	INTRON aret & 1 other	TF binding site BDTNP1_TFBS_z
2L	6045107	2L_6045107_SNP [dm3] 2L_6045107_SNP [dm6]	C	T	5.195e^-5	0.389	SYNONYMOUS_CODING ade2 DOWNSTREAM mir-966	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	6012543	2L_6012543_SNP [dm3] 2L_6012543_SNP [dm6]	G	T	5.268e^-5	0.389	UPSTREAM CG9098 DOWNSTREAM H2.0 INTERGENIC
3L	3283504	3L_3283504_SNP [dm3] 3L_3283504_SNP [dm6]	C	A	5.277e^-5	0.389	INTRON CG12017
2L	3515914	2L_3515914_SNP [dm3] 2L_3515914_SNP [dm6]	A	G	5.281e^-5	0.389	SYNONYMOUS_CODING CG17593	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8888970	2L_8888970_SNP [dm3] 2L_8888970_SNP [dm6]	T	G	5.289e^-5	0.389	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
2L	10147778	2L_10147778_SNP [dm3] 2L_10147778_SNP [dm6]	T	G	5.381e^-5	0.389	INTRON CG44153 & 1 other	TF binding site mE1_TFBS_cad
2L	10147403	2L_10147403_SNP [dm3] 2L_10147403_SNP [dm6]	T	C	5.381e^-5	0.389	INTRON CG44153 & 1 other	TF binding site mE1_TFBS_cad
3R	15080341	3R_15080341_SNP [dm3] 3R_19254619_SNP [dm6]	T	C	5.425e^-5	0.389	INTERGENIC
2L	15348676	2L_15348676_SNP [dm3] 2L_15348676_SNP [dm6]	T	C	5.440e^-5	0.389	INTERGENIC
3L	3394630	3L_3394630_SNP [dm3] 3L_3394630_SNP [dm6]	G	A	5.456e^-5	0.389	DOWNSTREAM CR45737 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	1902722	3L_1902722_SNP [dm3] 3L_1902722_SNP [dm6]	A	G	5.484e^-5	0.389	INTRON CG1887	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	7310436	X_7310436_SNP [dm3] X_7416403_SNP [dm6]	C	T	5.501e^-5	0.389	UPSTREAM CG34337 INTERGENIC
2L	11530439	2L_11530439_SNP [dm3] 2L_11530439_SNP [dm6]	A	G	5.507e^-5	0.389	INTRON CG31706
2R	10852680	2R_10852680_SNP [dm3] 2R_14965175_SNP [dm6]	A	G	5.522e^-5	0.389	UPSTREAM ckn INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	8398908	X_8398908_SNP [dm3] X_8504875_SNP [dm6]	T	G	5.539e^-5	0.389	INTRON CG33181
X	16114868	X_16114868_SNP [dm3] X_16220835_SNP [dm6]	C	G	5.584e^-5	0.389	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	12177261	2L_12177261_DEL [dm3] 2L_12177261_DEL [dm6]	TAT	T	5.637e^-5	0.389	INTRON aret & 1 other	TF binding site BDTNP1_TFBS_z
X	8746453	X_8746453_SNP [dm3] X_8852420_SNP [dm6]	C	A	5.639e^-5	0.389	INTRON CG12075
3L	3283511	3L_3283511_SNP [dm3] 3L_3283511_SNP [dm6]	G	A	5.662e^-5	0.389	INTRON CG12017
X	5251852	X_5251852_SNP [dm3] X_5357819_SNP [dm6]	G	T	5.669e^-5	0.389	UPSTREAM SK INTRON SK
2L	10461455	2L_10461455_SNP [dm3] 2L_10461455_SNP [dm6]	T	C	5.687e^-5	0.389	SYNONYMOUS_CODING LM408	TF binding site mE1_TFBS_cad
3L	10560160	3L_10560160_SNP [dm3] 3L_10567060_SNP [dm6]	C	A	5.700e^-5	0.389	INTRON A2bp1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3563634	3L_3563634_INS [dm3] 3L_3563634_INS [dm6]	C	CAC	5.702e^-5	0.389	INTRON Eip63E
2R	5314473	2R_5314473_SNP [dm3] 2R_9426968_SNP [dm6]	G	C	5.723e^-5	0.389	UTR_5_PRIME Pdk DOWNSTREAM prel	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	5996014	3R_5996014_SNP [dm3] 3R_10170292_SNP [dm6]	A	G	5.732e^-5	0.389	UTR_5_PRIME Best1 DOWNSTREAM CG12814	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	6978839	2R_6978839_SNP [dm3] 2R_11091334_SNP [dm6]	C	A	5.735e^-5	0.389	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	15339922	2L_15339922_SNP [dm3] 2L_15339922_SNP [dm6]	G	A	5.740e^-5	0.389	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	3515037	2L_3515037_SNP [dm3] 2L_3515037_SNP [dm6]	T	C	5.762e^-5	0.389	SYNONYMOUS_CODING CG17593 UPSTREAM CG33123
2L	3061029	2L_3061029_SNP [dm3] 2L_3061029_SNP [dm6]	T	C	5.771e^-5	0.389	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5237909	3L_5237909_SNP [dm3] 3L_5244809_SNP [dm6]	G	T	5.840e^-5	0.391	INTRON shep
X	2365996	X_2365996_SNP [dm3] X_2471963_SNP [dm6]	A	C	5.845e^-5	0.391	INTRON trol
2L	8888773	2L_8888773_SNP [dm3] 2L_8888773_SNP [dm6]	C	A	5.854e^-5	0.391	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2R	11618538	2R_11618538_SNP [dm3] 2R_15731033_SNP [dm6]	A	T	5.894e^-5	0.392	INTRON CG30089	TF binding site mE1_TFBS_HSA
3L	1896605	3L_1896605_SNP [dm3] 3L_1896605_SNP [dm6]	C	T	5.912e^-5	0.392	INTRON CG1887	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8539173	2R_8539173_SNP [dm3] 2R_12651668_SNP [dm6]	A	G	5.989e^-5	0.395	SYNONYMOUS_CODING CG8778
2L	4503838	2L_4503838_SNP [dm3] 2L_4503838_SNP [dm6]	A	G	5.997e^-5	0.395	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16523148	3R_16523148_SNP [dm3] 3R_20697426_SNP [dm6]	T	C	6.057e^-5	0.396	INTRON Oamb
3R	1112755	3R_1112755_SNP [dm3] 3R_5287033_SNP [dm6]	G	C	6.064e^-5	0.396	START_GAINED mtd UTR_5_PRIME mtd INTRON mtd
3R	11594007	3R_11594007_SNP [dm3] 3R_15768285_SNP [dm6]	G	T	6.115e^-5	0.396	UPSTREAM CG5623 INTERGENIC
X	5590603	X_5590603_SNP [dm3] X_5696570_SNP [dm6]	A	T	6.140e^-5	0.396	UPSTREAM CR42794 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	5410565	3R_5410565_SNP [dm3] 3R_9584843_SNP [dm6]	G	T	6.165e^-5	0.396	INTRON CG8301	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3248697	X_3248697_SNP [dm3] X_3354664_SNP [dm6]	T	G	6.178e^-5	0.396	INTERGENIC
3L	1605916	3L_1605916_SNP [dm3] 3L_1605916_SNP [dm6]	G	A	6.195e^-5	0.396	SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170
2L	8885684	2L_8885684_SNP [dm3] 2L_8885684_SNP [dm6]	C	T	6.204e^-5	0.396	INTERGENIC
3L	10026596	3L_10026596_SNP [dm3] 3L_10033496_SNP [dm6]	A	G	6.234e^-5	0.396	INTRON dpr6
3R	5140182	3R_5140182_SNP [dm3] 3R_9314460_SNP [dm6]	G	T	6.235e^-5	0.396	INTRON CG8861
3R	5421482	3R_5421482_SNP [dm3] 3R_9595760_SNP [dm6]	T	G	6.243e^-5	0.396	INTRON CG8312	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3320204	3L_3320204_DEL [dm3] 3L_3320204_DEL [dm6]	ATTGTAGAGTCTAGGCATGT...	A	6.296e^-5	0.396	UPSTREAM PIG-C & 1 other INTRON CG12016 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
X	10900577	X_10900577_SNP [dm3] X_11006544_SNP [dm6]	A	T	6.299e^-5	0.396	INTRON CG42339
2L	2718851	2L_2718851_SNP [dm3] 2L_2718851_SNP [dm6]	G	A	6.349e^-5	0.398	SYNONYMOUS_CODING CG31690	TF binding site mE1_TFBS_chinmo
2L	8885235	2L_8885235_INS [dm3] 2L_8885235_INS [dm6]	T	TT	6.368e^-5	0.398	INTERGENIC
3R	7491038	3R_7491038_SNP [dm3] 3R_11665316_SNP [dm6]	G	T	6.442e^-5	0.399	INTRON CG42327	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7491061	3R_7491061_SNP [dm3] 3R_11665339_SNP [dm6]	C	G	6.442e^-5	0.399	INTRON CG42327	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15087083	2R_15087083_SNP [dm3] 2R_19199578_SNP [dm6]	A	G	6.446e^-5	0.399	INTRON hppy
2L	8885276	2L_8885276_SNP [dm3] 2L_8885276_SNP [dm6]	T	G	6.513e^-5	0.4	INTERGENIC
3L	9373371	3L_9373371_SNP [dm3] 3L_9380271_SNP [dm6]	T	G	6.536e^-5	0.4	UPSTREAM Hsp67Ba EXON CR43481	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8886012	2L_8886012_SNP [dm3] 2L_8886012_SNP [dm6]	C	T	6.551e^-5	0.4	DOWNSTREAM CR44415 INTERGENIC
X	8512828	X_8512828_SNP [dm3] X_8618795_SNP [dm6]	A	G	6.565e^-5	0.4	INTERGENIC	regulatory region REDfly_CRMs
X	10433840	X_10433840_SNP [dm3] X_10539807_SNP [dm6]	T	C	6.575e^-5	0.4	INTRON spri	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13271285	3R_13271285_SNP [dm3] 3R_17445563_SNP [dm6]	T	A	6.627e^-5	0.402	SPLICE_SITE_REGION CG5873 INTRON CG5873
3L	4092421	3L_4092421_SNP [dm3] 3L_4092421_SNP [dm6]	T	C	6.642e^-5	0.402	UTR_3_PRIME CG14989 UPSTREAM CG14990	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8687643	2R_8687643_SNP [dm3] 2R_12800138_SNP [dm6]	T	C	6.695e^-5	0.404	SYNONYMOUS_CODING sca UPSTREAM CR45137	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1773058	3L_1773058_SNP [dm3] 3L_1773058_SNP [dm6]	C	T	6.771e^-5	0.404	SYNONYMOUS_CODING CG13933 UPSTREAM CR44351	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	6464338	3R_6464338_SNP [dm3] 3R_10638616_SNP [dm6]	A	G	6.798e^-5	0.404	UPSTREAM CR44018 INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	12326123	2R_12326123_SNP [dm3] 2R_16438618_SNP [dm6]	T	A	6.857e^-5	0.404	INTERGENIC
3R	6533877	3R_6533877_SNP [dm3] 3R_10708155_SNP [dm6]	G	T	6.894e^-5	0.404	NON_SYNONYMOUS_CODING CG31278 DOWNSTREAM CG14684 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	8226470	2L_8226470_SNP [dm3] 2L_8226470_SNP [dm6]	C	G	6.930e^-5	0.404	SYNONYMOUS_CODING Pvr
3L	13249233	3L_13249233_SNP [dm3] 3L_13256133_SNP [dm6]	A	G	6.932e^-5	0.404	INTRON caps
X	15479466	X_15479466_SNP [dm3] X_15585433_SNP [dm6]	A	G	6.934e^-5	0.404	UTR_3_PRIME CG9220 DOWNSTREAM CG8097
2L	5641693	2L_5641693_SNP [dm3] 2L_5641693_SNP [dm6]	A	G	6.983e^-5	0.404	UPSTREAM mir-963 & 1 other DOWNSTREAM mir-959 & 3 others INTRON CG31646
2R	11949172	2R_11949172_SNP [dm3] 2R_16061667_SNP [dm6]	C	T	7.053e^-5	0.404	DOWNSTREAM CG8405 INTERGENIC
2R	12710526	2R_12710526_SNP [dm3] 2R_16823021_SNP [dm6]	T	A	7.073e^-5	0.404	INTERGENIC
3L	9751350	3L_9751350_SNP [dm3] 3L_9758250_SNP [dm6]	G	C	7.099e^-5	0.404	INTRON CG42268
2R	11618546	2R_11618546_SNP [dm3] 2R_15731041_SNP [dm6]	G	A	7.103e^-5	0.404	INTRON CG30089	TF binding site mE1_TFBS_HSA
X	16914317	X_16914317_SNP [dm3] X_17020284_SNP [dm6]	C	A	7.105e^-5	0.404	INTRON CG45002
3R	6021648	3R_6021648_SNP [dm3] 3R_10195926_SNP [dm6]	C	T	7.136e^-5	0.404	SYNONYMOUS_CODING Syn
3L	15043516	3L_15043516_SNP [dm3] 3L_15050416_SNP [dm6]	T	A	7.178e^-5	0.404	UTR_3_PRIME CG12310 UPSTREAM CG43678 & 1 other DOWNSTREAM CG43679 INTRON Sytbeta
2L	9501777	2L_9501777_SNP [dm3] 2L_9501777_SNP [dm6]	C	T	7.212e^-5	0.404	INTRON CG33298
2L	6109083	2L_6109083_SNP [dm3] 2L_6109083_SNP [dm6]	G	A	7.218e^-5	0.404	UPSTREAM stai INTRON stai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	1264742	3R_1264742_SNP [dm3] 3R_5439020_SNP [dm6]	T	C	7.316e^-5	0.404	INTRON CG14669	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3L	9751468	3L_9751468_SNP [dm3] 3L_9758368_SNP [dm6]	T	G	7.317e^-5	0.404	INTRON CG42268
2L	8888943	2L_8888943_SNP [dm3] 2L_8888943_SNP [dm6]	G	A	7.326e^-5	0.404	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
2R	20135290	2R_20135290_SNP [dm3] 2R_24247767_SNP [dm6]	T	A	7.344e^-5	0.404	INTRON nord
2L	10873549	2L_10873549_SNP [dm3] 2L_10873549_SNP [dm6]	T	G	7.389e^-5	0.404	INTERGENIC
X	8928137	X_8928137_SNP [dm3] X_9034104_SNP [dm6]	C	A	7.394e^-5	0.404	INTRON CR43836 & 1 other
3R	857561	3R_857561_SNP [dm3] 3R_5031839_SNP [dm6]	A	C	7.413e^-5	0.404	INTERGENIC
3L	14062823	3L_14062823_SNP [dm3] 3L_14069723_SNP [dm6]	G	C	7.474e^-5	0.404	INTRON CG32138
2L	5032128	2L_5032128_SNP [dm3] 2L_5032128_SNP [dm6]	T	C	7.479e^-5	0.404	NON_SYNONYMOUS_CODING Cg25C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7271422	2L_7271422_SNP [dm3] 2L_7271422_SNP [dm6]	C	T	7.505e^-5	0.404	INTRON Wnt4	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	6554931	2L_6554931_DEL [dm3] 2L_6554931_DEL [dm6]	TGTA	T	7.516e^-5	0.404	DOWNSTREAM Osm6 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	11484811	2L_11484811_SNP [dm3] 2L_11484811_SNP [dm6]	G	A	7.536e^-5	0.404	UTR_5_PRIME sala & 1 other UPSTREAM CG43355	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4457556	2L_4457556_SNP [dm3] 2L_4457556_SNP [dm6]	A	G	7.599e^-5	0.404	UPSTREAM Gs1l DOWNSTREAM snoRNA:Me18S-C1831 INTRON RpL27A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	10137372	2L_10137372_SNP [dm3] 2L_10137372_SNP [dm6]	A	G	7.643e^-5	0.404	START_GAINED CG44153 UTR_5_PRIME CG44153	TF binding site mE1_TFBS_cad
3R	7227149	3R_7227149_SNP [dm3] 3R_11401427_SNP [dm6]	C	T	7.652e^-5	0.404	UTR_3_PRIME pros
2R	6811198	2R_6811198_SNP [dm3] 2R_10923693_SNP [dm6]	T	A	7.662e^-5	0.404	INTERGENIC
3L	3423124	3L_3423124_SNP [dm3] 3L_3423124_SNP [dm6]	A	T	7.665e^-5	0.404	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	12126849	2L_12126849_SNP [dm3] 2L_12126849_SNP [dm6]	C	A	7.670e^-5	0.404	SYNONYMOUS_CODING CG17211	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	12126915	2L_12126915_SNP [dm3] 2L_12126915_SNP [dm6]	T	C	7.670e^-5	0.404	SYNONYMOUS_CODING CG17211
2R	15810370	2R_15810370_SNP [dm3] 2R_19922865_SNP [dm6]	A	G	7.713e^-5	0.404	INTERGENIC
2R	988213	2R_988213_SNP [dm3] 2R_5100708_SNP [dm6]	C	T	7.717e^-5	0.404	INTERGENIC	transposable element FlyBase
2L	8888819	2L_8888819_SNP [dm3] 2L_8888819_SNP [dm6]	C	T	7.773e^-5	0.404	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	10873535	2L_10873535_DEL [dm3] 2L_10873535_DEL [dm6]	ACCCCAATTCGTT...	A	7.777e^-5	0.404	INTERGENIC
X	15747001	X_15747001_DEL [dm3] X_15852968_DEL [dm6]	TT	T	7.802e^-5	0.404	UPSTREAM CG15914 INTRON UBL3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	24160009	3L_24160009_SNP [dm3] 3L_24166909_SNP [dm6]	A	G	7.809e^-5	0.404	INTRON Snap25
2L	4457591	2L_4457591_SNP [dm3] 2L_4457591_SNP [dm6]	C	A	7.820e^-5	0.404	UPSTREAM Gs1l DOWNSTREAM snoRNA:Me18S-C1831 INTRON RpL27A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	14684173	3R_14684173_SNP [dm3] 3R_18858451_SNP [dm6]	T	A	7.829e^-5	0.404	INTERGENIC
X	5326806	X_5326806_SNP [dm3] X_5432773_SNP [dm6]	G	T	7.833e^-5	0.404	UPSTREAM CR44471 DOWNSTREAM CG15784 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	9581563	3L_9581563_SNP [dm3] 3L_9588463_SNP [dm6]	T	C	7.843e^-5	0.404	INTRON CG42673
2L	10373650	2L_10373650_SNP [dm3] 2L_10373650_SNP [dm6]	A	G	7.866e^-5	0.404	UTR_3_PRIME CG33303 DOWNSTREAM CG33303 INTRON rho-5
X	6275715	X_6275715_SNP [dm3] X_6381682_SNP [dm6]	C	A	7.870e^-5	0.404	INTERGENIC
X	16914213	X_16914213_SNP [dm3] X_17020180_SNP [dm6]	G	C	7.877e^-5	0.404	INTRON CG45002
2L	3060270	2L_3060270_SNP [dm3] 2L_3060270_SNP [dm6]	T	G	7.917e^-5	0.404	NON_SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7224275	3R_7224275_SNP [dm3] 3R_11398553_SNP [dm6]	C	A	7.927e^-5	0.404	UTR_3_PRIME pros
2L	8888805	2L_8888805_SNP [dm3] 2L_8888805_SNP [dm6]	G	A	7.990e^-5	0.404	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	10873581	2L_10873581_SNP [dm3] 2L_10873581_SNP [dm6]	T	G	8.020e^-5	0.404	INTERGENIC
3L	20942881	3L_20942881_SNP [dm3] 3L_20949781_SNP [dm6]	A	C	8.032e^-5	0.404	UPSTREAM fng DOWNSTREAM CR45243 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	12125882	2L_12125882_SNP [dm3] 2L_12125882_SNP [dm6]	G	A	8.040e^-5	0.404	SYNONYMOUS_CODING CG17211
2L	4701608	2L_4701608_SNP [dm3] 2L_4701608_SNP [dm6]	C	A	8.052e^-5	0.404	UPSTREAM Taf12L INTRON CG34351
3L	21520570	3L_21520570_SNP [dm3] 3L_21527470_SNP [dm6]	C	T	8.061e^-5	0.404	SYNONYMOUS_CODING CG7611 DOWNSTREAM CG32442
2L	8889235	2L_8889235_INS [dm3] 2L_8889235_INS [dm6]	G	GAAATGTACTTTATGT...	8.091e^-5	0.404	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
2L	10873468	2L_10873468_SNP [dm3] 2L_10873468_SNP [dm6]	A	T	8.106e^-5	0.404	INTERGENIC
2R	12413382	2R_12413382_SNP [dm3] 2R_16525877_SNP [dm6]	G	A	8.110e^-5	0.404	INTRON Sema-2a
2L	8888852	2L_8888852_SNP [dm3] 2L_8888852_SNP [dm6]	T	A	8.110e^-5	0.404	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
2L	8888902	2L_8888902_SNP [dm3] 2L_8888902_SNP [dm6]	T	C	8.110e^-5	0.404	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
3L	11622036	3L_11622036_SNP [dm3] 3L_11628936_SNP [dm6]	C	G	8.111e^-5	0.404	UPSTREAM mir-3642 INTRON CG18815	TF binding site mE1_TFBS_chinmo
3R	14269380	3R_14269380_SNP [dm3] 3R_18443658_SNP [dm6]	A	C	8.117e^-5	0.404	INTRON fru
2L	8888767	2L_8888767_SNP [dm3] 2L_8888767_SNP [dm6]	A	G	8.143e^-5	0.404	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3L	20718834	3L_20718834_SNP [dm3] 3L_20725734_SNP [dm6]	A	T	8.177e^-5	0.404	INTERGENIC
3R	7231860	3R_7231860_SNP [dm3] 3R_11406138_SNP [dm6]	A	T	8.191e^-5	0.404	UTR_3_PRIME pros
2L	5129418	2L_5129418_SNP [dm3] 2L_5129418_SNP [dm6]	C	T	8.198e^-5	0.404	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	19824457	2L_19824457_DEL [dm3] 2L_19824457_DEL [dm6]	TGGCCAAGAATTTACTGAAT...	T	8.219e^-5	0.404	INTRON sick
X	6275747	X_6275747_SNP [dm3] X_6381714_SNP [dm6]	T	C	8.232e^-5	0.404	INTERGENIC
3L	18823278	3L_18823278_SNP [dm3] 3L_18830178_SNP [dm6]	A	C	8.237e^-5	0.404	INTRON Indy	TF binding site mE1_TFBS_inv
2L	11033811	2L_11033811_SNP [dm3] 2L_11033811_SNP [dm6]	T	A	8.287e^-5	0.405	UPSTREAM CG18666 INTRON Samuel
3L	1692955	3L_1692955_SNP [dm3] 3L_1692955_SNP [dm6]	A	T	8.297e^-5	0.405	INTRON CG7991
2L	4455745	2L_4455745_SNP [dm3] 2L_4455745_SNP [dm6]	C	G	8.349e^-5	0.405	DOWNSTREAM CG15434 INTRON Gs1l	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3283459	3L_3283459_SNP [dm3] 3L_3283459_SNP [dm6]	C	G	8.365e^-5	0.405	INTRON CG12017
2L	8888789	2L_8888789_SNP [dm3] 2L_8888789_SNP [dm6]	A	G	8.380e^-5	0.405	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
X	12753624	X_12753624_SNP [dm3] X_12859591_SNP [dm6]	G	A	8.382e^-5	0.405	INTRON Pde9
3R	5767756	3R_5767756_SNP [dm3] 3R_9942034_SNP [dm6]	C	T	8.400e^-5	0.405	INTRON Glut4EF	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12202248	2L_12202248_INS [dm3] 2L_12202248_INS [dm6]	A	TCTT	8.472e^-5	0.406	INTRON aret
3L	8330055	3L_8330055_SNP [dm3] 3L_8336955_SNP [dm6]	A	G	8.504e^-5	0.406	INTRON Cpr66Cb
3L	11625248	3L_11625248_SNP [dm3] 3L_11632148_SNP [dm6]	A	C	8.509e^-5	0.406	DOWNSTREAM CR45158 INTRON CG32091
X	2775744	X_2775744_SNP [dm3] X_2881711_SNP [dm6]	C	G	8.520e^-5	0.406	DOWNSTREAM CG14418 INTRON kirre
3L	18136315	3L_18136315_SNP [dm3] 3L_18143215_SNP [dm6]	C	T	8.579e^-5	0.406	INTRON gk
3R	5994806	3R_5994806_SNP [dm3] 3R_10169084_SNP [dm6]	A	G	8.606e^-5	0.406	INTRON Best1	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_zfh1
2L	14392297	2L_14392297_SNP [dm3] 2L_14392297_SNP [dm6]	A	G	8.630e^-5	0.406	SYNONYMOUS_CODING elB	TF binding site mE1_TFBS_chinmo
2L	2763147	2L_2763147_SNP [dm3] 2L_2763147_SNP [dm6]	G	A	8.640e^-5	0.406	DOWNSTREAM CG3077 INTRON Trn-SR
2L	20507098	2L_20507098_SNP [dm3] 2L_20507098_SNP [dm6]	C	T	8.650e^-5	0.406	INTERGENIC
X	17593968	X_17593968_SNP [dm3] X_17699935_SNP [dm6]	A	G	8.663e^-5	0.406	UTR_3_PRIME CG8188 DOWNSTREAM CG8188	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	8244495	X_8244495_SNP [dm3] X_8350462_SNP [dm6]	G	A	8.682e^-5	0.406	INTRON nAChRalpha3
2L	8096039	2L_8096039_SNP [dm3] 2L_8096039_SNP [dm6]	G	C	8.686e^-5	0.406	INTRON Bsg
2R	11618521	2R_11618521_SNP [dm3] 2R_15731016_SNP [dm6]	A	T	8.755e^-5	0.408	INTRON CG30089	TF binding site mE1_TFBS_HSA
2L	12523617	2L_12523617_SNP [dm3] 2L_12523617_SNP [dm6]	C	T	8.758e^-5	0.408	INTRON bun
2L	5955752	2L_5955752_SNP [dm3] 2L_5955752_SNP [dm6]	A	T	8.816e^-5	0.408	DOWNSTREAM CG9044 & 1 other INTRON CG13999
3R	10057300	3R_10057300_SNP [dm3] 3R_14231578_SNP [dm6]	T	C	8.841e^-5	0.408	INTERGENIC
2L	12538065	2L_12538065_SNP [dm3] 2L_12538065_SNP [dm6]	G	A	8.842e^-5	0.408	SYNONYMOUS_CODING bun	TF binding site mE1_TFBS_chinmo
2L	879628	2L_879628_SNP [dm3] 2L_879628_SNP [dm6]	G	A	8.856e^-5	0.408	NON_SYNONYMOUS_CODING CG15824	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9780833	2L_9780833_SNP [dm3] 2L_9780833_SNP [dm6]	C	A	8.892e^-5	0.408	INTERGENIC
2L	3063669	2L_3063669_SNP [dm3] 2L_3063669_SNP [dm6]	T	C	8.975e^-5	0.408	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17746469	X_17746469_SNP [dm3] X_17852436_SNP [dm6]	C	T	8.994e^-5	0.408	NON_SYNONYMOUS_CODING CG32554 DOWNSTREAM CG6506 & 1 other	TF binding site BDTNP1_TFBS_dl
X	3710015	X_3710015_SNP [dm3] X_3815982_SNP [dm6]	C	T	9.035e^-5	0.408	INTRON ec	TF binding site BDTNP1_TFBS_twi
3L	21526995	3L_21526995_SNP [dm3] 3L_21533895_SNP [dm6]	C	T	9.071e^-5	0.408	UPSTREAM ppk5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	3680735	2L_3680735_SNP [dm3] 2L_3680735_SNP [dm6]	A	G	9.102e^-5	0.408	INTRON CG34340
3L	10101405	3L_10101405_SNP [dm3] 3L_10108305_SNP [dm6]	G	A	9.106e^-5	0.408	INTRON dpr6
2L	15303323	2L_15303323_SNP [dm3] 2L_15303323_SNP [dm6]	A	G	9.110e^-5	0.408	INTERGENIC
3R	12645135	3R_12645135_SNP [dm3] 3R_16819413_SNP [dm6]	T	A	9.134e^-5	0.408	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	5919522	3R_5919522_SNP [dm3] 3R_10093800_SNP [dm6]	T	C	9.159e^-5	0.408	EXON CR43459	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8889135	2L_8889135_SNP [dm3] 2L_8889135_SNP [dm6]	A	G	9.163e^-5	0.408	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
2L	9302232	2L_9302232_SNP [dm3] 2L_9302232_SNP [dm6]	C	G	9.177e^-5	0.408	UTR_3_PRIME Ggamma30A
X	11059846	X_11059846_MNP [dm3] X_11165813_MNP [dm6]	CAA	GCC	9.198e^-5	0.408	INTERGENIC
3L	10289423	3L_10289423_SNP [dm3] 3L_10296323_SNP [dm6]	G	T	9.204e^-5	0.408	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6484207	3R_6484207_SNP [dm3] 3R_10658485_SNP [dm6]	C	T	9.233e^-5	0.408	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	18160861	X_18160861_SNP [dm3] X_18266828_SNP [dm6]	G	A	9.256e^-5	0.408	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16336776	3L_16336776_SNP [dm3] 3L_16343676_SNP [dm6]	A	T	9.285e^-5	0.408	INTRON CG4998	TF binding site mE1_TFBS_cad
X	6797525	X_6797525_SNP [dm3] X_6903492_SNP [dm6]	C	A	9.313e^-5	0.408	INTERGENIC
X	18908813	X_18908813_SNP [dm3] X_19014780_SNP [dm6]	A	C	9.362e^-5	0.408	INTRON CG43759	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1269972	3L_1269972_SNP [dm3] 3L_1269972_SNP [dm6]	C	T	9.386e^-5	0.408	INTRON CG9134
3L	11224081	3L_11224081_DEL [dm3] 3L_11230981_DEL [dm6]	AATCTTAAA	A	9.445e^-5	0.408	DOWNSTREAM CR45405 & 1 other INTERGENIC
2L	4610391	2L_4610391_SNP [dm3] 2L_4610391_SNP [dm6]	T	C	9.454e^-5	0.408	INTRON dp	TF binding site mE1_TFBS_HSA
2R	9478671	2R_9478671_SNP [dm3] 2R_13591166_SNP [dm6]	T	C	9.476e^-5	0.408	SYNONYMOUS_CODING CG6191 UTR_3_PRIME CG45088	TF binding site BDTNP1_TFBS_sna
2R	11354328	2R_11354328_SNP [dm3] 2R_15466823_SNP [dm6]	C	T	9.499e^-5	0.408	INTRON CG43729
3R	6365434	3R_6365434_SNP [dm3] 3R_10539712_SNP [dm6]	G	A	9.508e^-5	0.408	INTRON hth	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6481606	3R_6481606_SNP [dm3] 3R_10655884_SNP [dm6]	T	G	9.525e^-5	0.408	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	19429202	3L_19429202_SNP [dm3] 3L_19436102_SNP [dm6]	A	T	9.556e^-5	0.408	INTERGENIC
2R	18164657	2R_18164657_SNP [dm3] 2R_22277152_SNP [dm6]	T	A	9.569e^-5	0.408	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9381908	X_9381908_SNP [dm3] X_9487875_SNP [dm6]	A	G	9.578e^-5	0.408	INTRON mgl
X	2778674	X_2778674_SNP [dm3] X_2884641_SNP [dm6]	G	A	9.582e^-5	0.408	UPSTREAM CG14418 DOWNSTREAM CG14419 INTRON kirre
3R	6387825	3R_6387825_SNP [dm3] 3R_10562103_SNP [dm6]	G	C	9.595e^-5	0.408	INTRON hth
X	10441028	X_10441028_SNP [dm3] X_10546995_SNP [dm6]	A	G	9.622e^-5	0.408	UPSTREAM spri INTRON spri	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14582128	2R_14582128_SNP [dm3] 2R_18694623_SNP [dm6]	G	A	9.628e^-5	0.408	INTRON Sik3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16914315	X_16914315_SNP [dm3] X_17020282_SNP [dm6]	T	C	9.631e^-5	0.408	INTRON CG45002
2L	10317475	2L_10317475_DEL [dm3] 2L_10317475_DEL [dm6]	AA	A	9.677e^-5	0.408	UTR_3_PRIME CG4972 DOWNSTREAM CG5381	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	4596639	X_4596639_SNP [dm3] X_4702606_SNP [dm6]	T	A	9.699e^-5	0.408	UTR_5_PRIME l_1_G0334 DOWNSTREAM ctp INTRON l_1_G0334	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12774489	2R_12774489_SNP [dm3] 2R_16886984_SNP [dm6]	C	T	9.732e^-5	0.408	INTRON CG8910
2L	11063218	2L_11063218_SNP [dm3] 2L_11063218_SNP [dm6]	T	A	9.740e^-5	0.408	INTRON Samuel
X	17750806	X_17750806_SNP [dm3] X_17856773_SNP [dm6]	G	C	9.747e^-5	0.408	UPSTREAM CG6762 & 1 other DOWNSTREAM CR43981 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	7634226	2L_7634226_SNP [dm3] 2L_7634226_SNP [dm6]	G	A	9.784e^-5	0.408	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	2680681	3L_2680681_SNP [dm3] 3L_2680681_SNP [dm6]	C	G	9.798e^-5	0.408	INTRON Fife
2L	11530310	2L_11530310_SNP [dm3] 2L_11530310_SNP [dm6]	C	A	9.801e^-5	0.408	INTRON CG31706
3R	6011163	3R_6011163_SNP [dm3] 3R_10185441_SNP [dm6]	C	T	9.807e^-5	0.408	INTRON CG12814
2L	12224938	2L_12224938_SNP [dm3] 2L_12224938_SNP [dm6]	G	C	9.866e^-5	0.408	INTRON aret
2L	3699580	2L_3699580_SNP [dm3] 2L_3699580_SNP [dm6]	C	A	9.876e^-5	0.408	UPSTREAM CG10031 & 1 other INTRON CG42464
2L	15348277	2L_15348277_SNP [dm3] 2L_15348277_SNP [dm6]	G	C	9.877e^-5	0.408	INTERGENIC
X	16129102	X_16129102_SNP [dm3] X_16235069_SNP [dm6]	G	A	9.934e^-5	0.408	INTERGENIC
2L	10873626	2L_10873626_SNP [dm3] 2L_10873626_SNP [dm6]	T	A	9.981e^-5	0.408	INTERGENIC
2L	14748882	2L_14748882_DEL [dm3] 2L_14748882_DEL [dm6]	TTT	T	9.986e^-5	0.408	INTERGENIC
3L	11619097	3L_11619097_SNP [dm3] 3L_11625997_SNP [dm6]	T	A	1.001e^-4	0.408	UTR_5_PRIME CG6083 UPSTREAM PCID2	TF binding site BDTNP1_TFBS_dl
3R	5860535	3R_5860535_SNP [dm3] 3R_10034813_SNP [dm6]	C	T	1.002e^-4	0.408	INTRON Mical	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	21527855	3L_21527855_SNP [dm3] 3L_21534755_SNP [dm6]	C	T	1.003e^-4	0.408	SYNONYMOUS_CODING ppk5	TF binding site mE1_TFBS_inv
3L	21532576	3L_21532576_SNP [dm3] 3L_21539476_SNP [dm6]	T	G	1.003e^-4	0.408	UPSTREAM VhaM9.7-b & 1 other DOWNSTREAM Rpn10 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	21547143	3L_21547143_SNP [dm3] 3L_21554043_SNP [dm6]	C	T	1.003e^-4	0.408	NON_SYNONYMOUS_CODING Wnk
2L	12123926	2L_12123926_SNP [dm3] 2L_12123926_SNP [dm6]	C	T	1.005e^-4	0.408	INTRON CG17211
3L	9748633	3L_9748633_SNP [dm3] 3L_9755533_SNP [dm6]	A	C	1.013e^-4	0.409	INTRON CG42268
3R	6549404	3R_6549404_SNP [dm3] 3R_10723682_SNP [dm6]	A	G	1.015e^-4	0.409	INTERGENIC
X	7470945	X_7470945_SNP [dm3] X_7576912_SNP [dm6]	G	A	1.015e^-4	0.409	DOWNSTREAM CG11369 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Kr
3R	5919720	3R_5919720_SNP [dm3] 3R_10093998_SNP [dm6]	A	T	1.016e^-4	0.409	EXON CR43459	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	836796	2L_836796_SNP [dm3] 2L_836796_SNP [dm6]	A	T	1.024e^-4	0.411	SYNONYMOUS_CODING drongo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10138054	2L_10138054_SNP [dm3] 2L_10138054_SNP [dm6]	T	C	1.030e^-4	0.413	INTRON CG44153
3L	10000505	3L_10000505_SNP [dm3] 3L_10007405_SNP [dm6]	G	A	1.033e^-4	0.413	INTRON dpr6
X	16707826	X_16707826_SNP [dm3] X_16813793_SNP [dm6]	T	C	1.037e^-4	0.414	INTRON CG4829
3R	4978414	3R_4978414_SNP [dm3] 3R_9152692_SNP [dm6]	C	T	1.039e^-4	0.414	INTRON pum
3R	21285892	3R_21285892_SNP [dm3] 3R_25460170_SNP [dm6]	T	C	1.047e^-4	0.415	INTRON Fur1
2R	11417295	2R_11417295_SNP [dm3] 2R_15529790_SNP [dm6]	G	A	1.055e^-4	0.415	INTRON Khc-73	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17693891	X_17693891_SNP [dm3] X_17799858_SNP [dm6]	A	T	1.056e^-4	0.415	INTRON OdsH	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	14276877	2L_14276877_SNP [dm3] 2L_14276877_SNP [dm6]	A	T	1.057e^-4	0.415	UPSTREAM CG32971 INTRON wb & 1 other
2R	9569367	2R_9569367_SNP [dm3] 2R_13681862_SNP [dm6]	T	A	1.058e^-4	0.415	INTRON fas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11835314	3L_11835314_INS [dm3] 3L_11842214_INS [dm6]	G	GAGG	1.058e^-4	0.415	INTERGENIC
2L	7995624	2L_7995624_SNP [dm3] 2L_7995624_SNP [dm6]	G	A	1.059e^-4	0.415	SYNONYMOUS_CODING CG7227 EXON CR44996	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	15337302	2L_15337302_SNP [dm3] 2L_15337302_SNP [dm6]	G	C	1.066e^-4	0.415	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	5012290	3R_5012290_SNP [dm3] 3R_9186568_SNP [dm6]	T	C	1.066e^-4	0.415	INTRON pum
3L	2162275	3L_2162275_SNP [dm3] 3L_2162275_SNP [dm6]	T	C	1.068e^-4	0.415	INTRON CG15822
X	17173341	X_17173341_SNP [dm3] X_17279308_SNP [dm6]	A	G	1.071e^-4	0.415	SYNONYMOUS_CODING f	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6499347	3R_6499347_SNP [dm3] 3R_10673625_SNP [dm6]	A	G	1.075e^-4	0.415	INTERGENIC
X	5590590	X_5590590_SNP [dm3] X_5696557_SNP [dm6]	T	G	1.078e^-4	0.415	UPSTREAM CR42794 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	5927213	2L_5927213_SNP [dm3] 2L_5927213_SNP [dm6]	A	G	1.079e^-4	0.415	INTRON dsf
3L	5237049	3L_5237049_SNP [dm3] 3L_5243949_SNP [dm6]	A	G	1.080e^-4	0.415	INTRON shep
2R	5638817	2R_5638817_INS [dm3] 2R_9751312_INS [dm6]	A	AT	1.080e^-4	0.415	INTERGENIC
X	7748972	X_7748972_SNP [dm3] X_7854939_SNP [dm6]	C	T	1.081e^-4	0.415	UPSTREAM CG10920 INTERGENIC
3R	1112754	3R_1112754_SNP [dm3] 3R_5287032_SNP [dm6]	A	G	1.082e^-4	0.415	UTR_5_PRIME mtd INTRON mtd
X	2245749	X_2245749_SNP [dm3] X_2351716_SNP [dm6]	C	T	1.085e^-4	0.415	INTRON ptr
2L	12126989	2L_12126989_SNP [dm3] 2L_12126989_SNP [dm6]	C	T	1.092e^-4	0.417	NON_SYNONYMOUS_CODING CG17211
2L	13331706	2L_13331706_SNP [dm3] 2L_13331706_SNP [dm6]	C	A	1.097e^-4	0.417	UPSTREAM CG43778 INTERGENIC
3L	2180916	3L_2180916_SNP [dm3] 3L_2180916_SNP [dm6]	C	G	1.097e^-4	0.417	INTERGENIC
X	10901147	X_10901147_SNP [dm3] X_11007114_SNP [dm6]	C	G	1.100e^-4	0.417	INTRON CG42339
2L	4899161	2L_4899161_SNP [dm3] 2L_4899161_SNP [dm6]	G	C	1.102e^-4	0.417	INTRON CG3036
2R	12715945	2R_12715945_SNP [dm3] 2R_16828440_SNP [dm6]	T	C	1.107e^-4	0.419	UPSTREAM CR43650 DOWNSTREAM CG34460 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	14254056	2L_14254056_SNP [dm3] 2L_14254056_SNP [dm6]	G	T	1.111e^-4	0.419	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	8881808	2L_8881808_SNP [dm3] 2L_8881808_SNP [dm6]	G	A	1.115e^-4	0.419	INTERGENIC
2R	8687542	2R_8687542_SNP [dm3] 2R_12800037_SNP [dm6]	G	C	1.118e^-4	0.419	NON_SYNONYMOUS_CODING sca UPSTREAM CR45137	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	615879	2L_615879_SNP [dm3] 2L_615879_SNP [dm6]	G	T	1.119e^-4	0.419	INTERGENIC
2L	8195603	2L_8195603_SNP [dm3] 2L_8195603_SNP [dm6]	C	T	1.122e^-4	0.419	INTRON CG8475 EXON CR44116	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3629942	2L_3629942_SNP [dm3] 2L_3629942_SNP [dm6]	C	T	1.122e^-4	0.419	INTRON for
2R	12774491	2R_12774491_INS [dm3] 2R_16886986_INS [dm6]	A	ATTCTGTATACTATAGACAC...	1.126e^-4	0.419	INTRON CG8910
2R	11618549	2R_11618549_DEL [dm3] 2R_15731044_DEL [dm6]	ATA	A	1.128e^-4	0.419	INTRON CG30089	TF binding site mE1_TFBS_HSA
2R	11618559	2R_11618559_SNP [dm3] 2R_15731054_SNP [dm6]	C	G	1.128e^-4	0.419	INTRON CG30089
3L	9104148	3L_9104148_SNP [dm3] 3L_9111048_SNP [dm6]	G	A	1.130e^-4	0.419	INTRON bol
2L	8312177	2L_8312177_SNP [dm3] 2L_8312177_SNP [dm6]	C	A	1.132e^-4	0.419	UPSTREAM CG7810 INTRON CG7806
2R	5874703	2R_5874703_SNP [dm3] 2R_9987198_SNP [dm6]	C	T	1.134e^-4	0.419	DOWNSTREAM CR45324 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	3537755	2L_3537755_SNP [dm3] 2L_3537755_SNP [dm6]	T	C	1.138e^-4	0.419	UPSTREAM CR44308 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	14060476	2R_14060476_SNP [dm3] 2R_18172971_SNP [dm6]	T	C	1.143e^-4	0.419	UPSTREAM CR45315 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	10344841	X_10344841_SNP [dm3] X_10450808_SNP [dm6]	A	T	1.146e^-4	0.419	INTRON CG32683
3R	14699636	3R_14699636_SNP [dm3] 3R_18873914_SNP [dm6]	T	C	1.146e^-4	0.419	INTERGENIC
2R	15603058	2R_15603058_SNP [dm3] 2R_19715553_SNP [dm6]	T	C	1.147e^-4	0.419	UPSTREAM tRNA:CR30215 DOWNSTREAM CG8517 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15120025	2R_15120025_SNP [dm3] 2R_19232520_SNP [dm6]	A	G	1.153e^-4	0.419	INTRON cora	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14062861	3L_14062861_SNP [dm3] 3L_14069761_SNP [dm6]	C	T	1.155e^-4	0.419	INTRON CG32138
2L	13227367	2L_13227367_SNP [dm3] 2L_13227367_SNP [dm6]	C	T	1.156e^-4	0.419	UPSTREAM CG16813 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	10853125	2L_10853125_SNP [dm3] 2L_10853125_SNP [dm6]	G	A	1.156e^-4	0.419	SYNONYMOUS_CODING CG43129	TF binding site mE1_TFBS_chinmo
2R	13564344	2R_13564344_SNP [dm3] 2R_17676839_SNP [dm6]	A	G	1.165e^-4	0.419	INTRON Sema-1b	TF binding site mE1_TFBS_cad
3L	16509209	3L_16509209_DEL [dm3] 3L_16516109_DEL [dm6]	TT	A	1.165e^-4	0.419	INTRON CG43373
2L	8916174	2L_8916174_SNP [dm3] 2L_8916174_SNP [dm6]	A	T	1.169e^-4	0.419	INTRON CG34398
3L	8330183	3L_8330183_SNP [dm3] 3L_8337083_SNP [dm6]	A	C	1.174e^-4	0.419	INTRON Cpr66Cb
3L	11224092	3L_11224092_INS [dm3] 3L_11230992_INS [dm6]	T	TATTATA	1.175e^-4	0.419	DOWNSTREAM CR45405 & 1 other INTERGENIC
2L	13910683	2L_13910683_SNP [dm3] 2L_13910683_SNP [dm6]	G	A	1.179e^-4	0.419	INTRON Ance-2	TF binding site mE1_TFBS_cad
3R	6097815	3R_6097815_SNP [dm3] 3R_10272093_SNP [dm6]	T	A	1.180e^-4	0.419	INTRON CG43143
2L	8226400	2L_8226400_SNP [dm3] 2L_8226400_SNP [dm6]	T	G	1.180e^-4	0.419	SPLICE_SITE_REGION Pvr INTRON Pvr
2L	15348137	2L_15348137_SNP [dm3] 2L_15348137_SNP [dm6]	T	C	1.180e^-4	0.419	INTERGENIC
2L	8098240	2L_8098240_SNP [dm3] 2L_8098240_SNP [dm6]	A	G	1.183e^-4	0.419	INTRON Bsg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	3320078	3L_3320078_SNP [dm3] 3L_3320078_SNP [dm6]	C	T	1.184e^-4	0.419	UPSTREAM PIG-C & 1 other INTRON CG12016 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3L	5785734	3L_5785734_SNP [dm3] 3L_5792634_SNP [dm6]	A	C	1.185e^-4	0.419	INTRON Bre1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13331698	2L_13331698_SNP [dm3] 2L_13331698_SNP [dm6]	T	C	1.185e^-4	0.419	UPSTREAM CG43778 INTERGENIC
3R	6010054	3R_6010054_SNP [dm3] 3R_10184332_SNP [dm6]	C	T	1.186e^-4	0.419	INTRON CG12814	TF binding site mE1_TFBS_cad
X	11730522	X_11730522_SNP [dm3] X_11836489_SNP [dm6]	C	G	1.189e^-4	0.419	UTR_3_PRIME rudhira DOWNSTREAM rudhira
3L	11830098	3L_11830098_SNP [dm3] 3L_11836998_SNP [dm6]	A	G	1.194e^-4	0.42	UPSTREAM CG43064 INTERGENIC
2L	17632688	2L_17632688_SNP [dm3] 2L_17632688_SNP [dm6]	C	T	1.203e^-4	0.42	INTERGENIC
X	15757377	X_15757377_DEL [dm3] X_15863344_DEL [dm6]	CC	C	1.207e^-4	0.42	UTR_3_PRIME Gbeta13F DOWNSTREAM Gbeta13F
X	9591086	X_9591086_SNP [dm3] X_9697053_SNP [dm6]	C	T	1.208e^-4	0.42	UTR_3_PRIME btd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1408005	3L_1408005_SNP [dm3] 3L_1408005_SNP [dm6]	A	G	1.209e^-4	0.42	INTRON Ptp61F
3R	6014473	3R_6014473_SNP [dm3] 3R_10188751_SNP [dm6]	G	A	1.211e^-4	0.42	INTRON CG12814
2L	14489538	2L_14489538_SNP [dm3] 2L_14489538_SNP [dm6]	G	A	1.212e^-4	0.42	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5971137	2L_5971137_SNP [dm3] 2L_5971137_SNP [dm6]	T	G	1.212e^-4	0.42	UPSTREAM CR43465 DOWNSTREAM Ucp4B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	10451769	X_10451769_SNP [dm3] X_10557736_SNP [dm6]	A	C	1.213e^-4	0.42	UPSTREAM spri INTRON spri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8886767	2L_8886767_DEL [dm3] 2L_8886767_DEL [dm6]	CCGT	TG	1.213e^-4	0.42	DOWNSTREAM CR44415 INTERGENIC	TF binding site mE1_TFBS_cnc
2L	8888058	2L_8888058_SNP [dm3] 2L_8888058_SNP [dm6]	G	C	1.219e^-4	0.421	UPSTREAM CR44415 INTERGENIC	TF binding site mE1_TFBS_cad
X	16114871	X_16114871_SNP [dm3] X_16220838_SNP [dm6]	T	A	1.221e^-4	0.421	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	22955679	3L_22955679_SNP [dm3] 3L_22962579_SNP [dm6]	A	C	1.225e^-4	0.421	DOWNSTREAM CR45758 INTERGENIC
3R	16069815	3R_16069815_SNP [dm3] 3R_20244093_SNP [dm6]	T	C	1.231e^-4	0.423	UTR_3_PRIME Nlg4	TF binding site BDTNP1_TFBS_sna
X	12332193	X_12332193_SNP [dm3] X_12438160_SNP [dm6]	C	A	1.235e^-4	0.423	INTRON Pkcdelta
2L	8889085	2L_8889085_SNP [dm3] 2L_8889085_SNP [dm6]	C	T	1.239e^-4	0.423	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
2R	9955563	2R_9955563_SNP [dm3] 2R_14068058_SNP [dm6]	G	C	1.239e^-4	0.423	INTRON Prosap
X	4982607	X_4982607_SNP [dm3] X_5088574_SNP [dm6]	G	A	1.245e^-4	0.424	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8888817	2L_8888817_SNP [dm3] 2L_8888817_SNP [dm6]	C	A	1.246e^-4	0.424	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	14532717	2L_14532717_SNP [dm3] 2L_14532717_SNP [dm6]	A	T	1.249e^-4	0.424	EXON CR44852
3R	12677977	3R_12677977_SNP [dm3] 3R_16852255_SNP [dm6]	A	C	1.254e^-4	0.425	INTRON iab-8 & 1 other EXON iab-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17496682	X_17496682_SNP [dm3] X_17602649_SNP [dm6]	G	T	1.260e^-4	0.426	SYNONYMOUS_CODING X11L
2L	10013526	2L_10013526_SNP [dm3] 2L_10013526_SNP [dm6]	T	C	1.262e^-4	0.426	SYNONYMOUS_CODING CG13131 DOWNSTREAM Trp1
X	10938828	X_10938828_SNP [dm3] X_11044795_SNP [dm6]	G	A	1.264e^-4	0.426	UTR_5_PRIME CG11160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8889125	2L_8889125_SNP [dm3] 2L_8889125_SNP [dm6]	C	T	1.264e^-4	0.426	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
2L	615874	2L_615874_SNP [dm3] 2L_615874_SNP [dm6]	T	C	1.272e^-4	0.426	INTERGENIC
2L	2727365	2L_2727365_SNP [dm3] 2L_2727365_SNP [dm6]	G	A	1.278e^-4	0.426	INTRON CG31689
3L	11225998	3L_11225998_SNP [dm3] 3L_11232898_SNP [dm6]	T	A	1.279e^-4	0.426	DOWNSTREAM Ir68a INTERGENIC
2R	15087164	2R_15087164_SNP [dm3] 2R_19199659_SNP [dm6]	C	A	1.279e^-4	0.426	INTRON hppy
X	5327119	X_5327119_SNP [dm3] X_5433086_SNP [dm6]	G	T	1.280e^-4	0.426	UPSTREAM CR44471 DOWNSTREAM CG15784 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	10667307	2L_10667307_SNP [dm3] 2L_10667307_SNP [dm6]	G	C	1.281e^-4	0.426	INTRON CG31871
3L	1408011	3L_1408011_SNP [dm3] 3L_1408011_SNP [dm6]	G	A	1.282e^-4	0.426	INTRON Ptp61F
3L	5237965	3L_5237965_SNP [dm3] 3L_5244865_SNP [dm6]	G	A	1.287e^-4	0.426	INTRON shep
3L	2990384	3L_2990384_SNP [dm3] 3L_2990384_SNP [dm6]	C	G	1.290e^-4	0.426	INTERGENIC
2L	7151680	2L_7151680_SNP [dm3] 2L_7151680_SNP [dm6]	G	A	1.290e^-4	0.426	INTRON Pvf3
2L	2718854	2L_2718854_SNP [dm3] 2L_2718854_SNP [dm6]	G	A	1.291e^-4	0.426	SYNONYMOUS_CODING CG31690	TF binding site mE1_TFBS_chinmo
X	16114866	X_16114866_SNP [dm3] X_16220833_SNP [dm6]	T	G	1.294e^-4	0.426	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	8881653	2L_8881653_SNP [dm3] 2L_8881653_SNP [dm6]	G	A	1.295e^-4	0.426	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	5392329	3R_5392329_SNP [dm3] 3R_9566607_SNP [dm6]	C	T	1.298e^-4	0.426	SYNONYMOUS_CODING CG16789 DOWNSTREAM Vps45	TF binding site mE1_TFBS_cad
2L	12129823	2L_12129823_INS [dm3] 2L_12129823_INS [dm6]	T	TTAATTAAGCC...	1.300e^-4	0.426	UTR_3_PRIME CG17211 DOWNSTREAM rho-6
2L	9630053	2L_9630053_SNP [dm3] 2L_9630053_SNP [dm6]	T	A	1.306e^-4	0.427	INTERGENIC
X	4596743	X_4596743_SNP [dm3] X_4702710_SNP [dm6]	A	G	1.311e^-4	0.427	NON_SYNONYMOUS_CODING l_1_G0334 UTR_5_PRIME l_1_G0334 DOWNSTREAM ctp INTRON l_1_G0334	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	20281789	3R_20281789_SNP [dm3] 3R_24456067_SNP [dm6]	C	T	1.314e^-4	0.427	INTRON nAChRalpha1
2L	615853	2L_615853_SNP [dm3] 2L_615853_SNP [dm6]	C	T	1.315e^-4	0.427	INTERGENIC
X	6797607	X_6797607_SNP [dm3] X_6903574_SNP [dm6]	C	T	1.315e^-4	0.427	INTERGENIC
2R	20106920	2R_20106920_SNP [dm3] 2R_24219397_SNP [dm6]	C	A	1.316e^-4	0.427	INTRON CG30419
2L	5971104	2L_5971104_SNP [dm3] 2L_5971104_SNP [dm6]	G	C	1.317e^-4	0.427	UPSTREAM CR43465 DOWNSTREAM Ucp4B INTERGENIC	TF binding site mE1_TFBS_cad
3L	9605867	3L_9605867_SNP [dm3] 3L_9612767_SNP [dm6]	A	G	1.331e^-4	0.43	NON_SYNONYMOUS_CODING CG3280	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9609124	2R_9609124_SNP [dm3] 2R_13721619_SNP [dm6]	T	G	1.333e^-4	0.43	INTRON fas
2R	9609131	2R_9609131_SNP [dm3] 2R_13721626_SNP [dm6]	G	A	1.336e^-4	0.43	INTRON fas
2L	5501570	2L_5501570_SNP [dm3] 2L_5501570_SNP [dm6]	G	T	1.339e^-4	0.43	INTERGENIC	TF binding site mE1_TFBS_cad
3L	14647532	3L_14647532_SNP [dm3] 3L_14654432_SNP [dm6]	A	T	1.340e^-4	0.43	INTRON dlp
X	18147255	X_18147255_SNP [dm3] X_18253222_SNP [dm6]	G	A	1.347e^-4	0.431	INTERGENIC
X	12917557	X_12917557_SNP [dm3] X_13023524_SNP [dm6]	G	T	1.349e^-4	0.431	DOWNSTREAM CG2209 INTRON rad
2R	12668472	2R_12668472_SNP [dm3] 2R_16780967_SNP [dm6]	T	C	1.350e^-4	0.431	SYNONYMOUS_CODING resilin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	20137247	2R_20137247_SNP [dm3] 2R_24249724_SNP [dm6]	G	A	1.353e^-4	0.431	SYNONYMOUS_CODING Ir60a INTRON nord	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3541692	3R_3541692_SNP [dm3] 3R_7715970_SNP [dm6]	G	C	1.357e^-4	0.431	INTERGENIC
2L	8889286	2L_8889286_SNP [dm3] 2L_8889286_SNP [dm6]	C	A	1.358e^-4	0.431	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
3R	5424509	3R_5424509_SNP [dm3] 3R_9598787_SNP [dm6]	T	A	1.358e^-4	0.431	INTRON CG8312	TF binding site BDTNP1_TFBS_hb
2L	10426784	2L_10426784_SNP [dm3] 2L_10426784_SNP [dm6]	T	C	1.360e^-4	0.431	UPSTREAM KdelR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	10504088	3R_10504088_SNP [dm3] 3R_14678366_SNP [dm6]	C	T	1.365e^-4	0.431	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	20494796	3R_20494796_SNP [dm3] 3R_24669074_SNP [dm6]	T	C	1.367e^-4	0.431	INTRON slo	regulatory region REDfly_CRMs
3R	842800	3R_842800_SNP [dm3] 3R_5017078_SNP [dm6]	C	G	1.370e^-4	0.431	INTRON CR45585	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3612418	2L_3612418_SNP [dm3] 2L_3612418_SNP [dm6]	A	T	1.372e^-4	0.431	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14723482	3R_14723482_SNP [dm3] 3R_18897760_SNP [dm6]	G	A	1.379e^-4	0.431	UPSTREAM CG14297 INTERGENIC
3L	5237973	3L_5237973_SNP [dm3] 3L_5244873_SNP [dm6]	G	A	1.382e^-4	0.431	INTRON shep
3L	2851344	3L_2851344_SNP [dm3] 3L_2851344_SNP [dm6]	G	A	1.382e^-4	0.431	INTRON CG43444	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	12123382	2L_12123382_SNP [dm3] 2L_12123382_SNP [dm6]	A	G	1.385e^-4	0.431	INTRON CG17211
3L	13715538	3L_13715538_SNP [dm3] 3L_13722438_SNP [dm6]	A	G	1.385e^-4	0.431	INTRON bru-3
2L	487123	2L_487123_SNP [dm3] 2L_487123_SNP [dm6]	C	T	1.388e^-4	0.431	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	8927741	X_8927741_DEL [dm3] X_9033708_DEL [dm6]	CCA	C	1.390e^-4	0.431	INTRON CR43836 & 1 other
2L	5971096	2L_5971096_SNP [dm3] 2L_5971096_SNP [dm6]	A	G	1.393e^-4	0.431	UPSTREAM CR43465 DOWNSTREAM Ucp4B INTERGENIC	TF binding site mE1_TFBS_cad
2R	17643902	2R_17643902_DEL [dm3] 2R_21756397_DEL [dm6]	GG	G	1.393e^-4	0.431	UPSTREAM Grx-1 INTERGENIC
3R	24107495	3R_24107495_SNP [dm3] 3R_28281773_SNP [dm6]	C	T	1.396e^-4	0.431	UPSTREAM CG34436 INTERGENIC
3L	2120213	3L_2120213_SNP [dm3] 3L_2120213_SNP [dm6]	T	G	1.399e^-4	0.431	INTRON zormin
3R	2210499	3R_2210499_SNP [dm3] 3R_6384777_SNP [dm6]	A	G	1.400e^-4	0.431	INTRON godzilla
X	17166791	X_17166791_SNP [dm3] X_17272758_SNP [dm6]	A	C	1.401e^-4	0.431	INTRON f	TF binding site mE1_TFBS_cad
2R	17064435	2R_17064435_SNP [dm3] 2R_21176930_SNP [dm6]	A	T	1.401e^-4	0.431	DOWNSTREAM CG4286 INTRON Pu
3L	16553930	3L_16553930_SNP [dm3] 3L_16560830_SNP [dm6]	C	T	1.407e^-4	0.431	INTERGENIC
2L	7634262	2L_7634262_SNP [dm3] 2L_7634262_SNP [dm6]	C	T	1.407e^-4	0.431	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	21349541	3L_21349541_SNP [dm3] 3L_21356441_SNP [dm6]	C	T	1.413e^-4	0.432	UPSTREAM CG12971 INTRON CG12971
3R	5996900	3R_5996900_SNP [dm3] 3R_10171178_SNP [dm6]	A	T	1.418e^-4	0.433	UTR_3_PRIME CG12814 UPSTREAM Best1	TF binding site mE1_TFBS_cad
3R	5012291	3R_5012291_SNP [dm3] 3R_9186569_SNP [dm6]	T	C	1.431e^-4	0.436	INTRON pum
2R	17295665	2R_17295665_SNP [dm3] 2R_21408160_SNP [dm6]	G	C	1.432e^-4	0.436	INTRON Sdc
2R	15087314	2R_15087314_SNP [dm3] 2R_19199809_SNP [dm6]	G	C	1.437e^-4	0.437	INTRON hppy
3L	1590954	3L_1590954_SNP [dm3] 3L_1590954_SNP [dm6]	C	T	1.446e^-4	0.438	INTRON CG13917
2L	8885676	2L_8885676_SNP [dm3] 2L_8885676_SNP [dm6]	C	T	1.447e^-4	0.438	INTERGENIC
2L	9127683	2L_9127683_SNP [dm3] 2L_9127683_SNP [dm6]	A	T	1.449e^-4	0.438	INTRON CG32982	TF binding site BDTNP1_TFBS_dl
3R	14723484	3R_14723484_SNP [dm3] 3R_18897762_SNP [dm6]	G	A	1.454e^-4	0.438	UPSTREAM CG14297 INTERGENIC
2L	912495	2L_912495_SNP [dm3] 2L_912495_SNP [dm6]	A	G	1.456e^-4	0.438	DOWNSTREAM CR44061 INTERGENIC
2L	10502990	2L_10502990_SNP [dm3] 2L_10502990_SNP [dm6]	T	A	1.456e^-4	0.438	INTRON Myo31DF
3R	5887724	3R_5887724_SNP [dm3] 3R_10062002_SNP [dm6]	G	T	1.459e^-4	0.439	UPSTREAM CG33630 & 1 other DOWNSTREAM Npc2c INTRON CR33629
3R	14945061	3R_14945061_SNP [dm3] 3R_19119339_SNP [dm6]	G	A	1.466e^-4	0.44	INTRON CG6040
2R	4182558	2R_4182558_SNP [dm3] 2R_8295053_SNP [dm6]	G	A	1.470e^-4	0.44	INTERGENIC
3R	6350003	3R_6350003_SNP [dm3] 3R_10524281_SNP [dm6]	C	T	1.471e^-4	0.44	INTRON hth
3L	9484313	3L_9484313_SNP [dm3] 3L_9491213_SNP [dm6]	T	A	1.474e^-4	0.44	INTRON CG32037	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	12722153	X_12722153_SNP [dm3] X_12828120_SNP [dm6]	A	C	1.477e^-4	0.441	INTRON Pde9
2R	6811196	2R_6811196_SNP [dm3] 2R_10923691_SNP [dm6]	A	C	1.484e^-4	0.442	INTERGENIC
2R	14653394	2R_14653394_INS [dm3] 2R_18765889_INS [dm6]	T	TT	1.492e^-4	0.442	INTRON Mctp
2R	6922210	2R_6922210_SNP [dm3] 2R_11034705_SNP [dm6]	A	G	1.493e^-4	0.442	INTRON luna	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	11423949	X_11423949_SNP [dm3] X_11529916_SNP [dm6]	A	G	1.493e^-4	0.442	INTRON Drak
2L	6005978	2L_6005978_SNP [dm3] 2L_6005978_SNP [dm6]	A	G	1.495e^-4	0.442	SYNONYMOUS_CODING Gal EXON CR43866
3L	14161900	3L_14161900_SNP [dm3] 3L_14168800_SNP [dm6]	A	T	1.503e^-4	0.444	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	615855	2L_615855_SNP [dm3] 2L_615855_SNP [dm6]	T	A	1.508e^-4	0.444	INTERGENIC
X	12722117	X_12722117_SNP [dm3] X_12828084_SNP [dm6]	A	G	1.508e^-4	0.444	INTRON Pde9
3L	3326817	3L_3326817_SNP [dm3] 3L_3326817_SNP [dm6]	T	A	1.518e^-4	0.444	UPSTREAM CG11526 INTRON CG11526 & 1 other	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	18828906	X_18828906_SNP [dm3] X_18934873_SNP [dm6]	T	C	1.519e^-4	0.444	INTRON CG43759
3R	3866804	3R_3866804_SNP [dm3] 3R_8041082_SNP [dm6]	G	T	1.519e^-4	0.444	UPSTREAM CG43060 INTERGENIC
2R	13803635	2R_13803635_SNP [dm3] 2R_17916130_SNP [dm6]	C	T	1.519e^-4	0.444	INTRON Elk
2L	8880102	2L_8880102_SNP [dm3] 2L_8880102_SNP [dm6]	C	G	1.522e^-4	0.444	INTERGENIC
2L	8880103	2L_8880103_DEL [dm3] 2L_8880103_DEL [dm6]	GTCTAAGACTG...	G	1.522e^-4	0.444	INTERGENIC
2R	8492623	2R_8492623_DEL [dm3] 2R_12605118_DEL [dm6]	CAAGAAACCAAC...	C	1.528e^-4	0.445	INTRON Amph
2L	9430211	2L_9430211_SNP [dm3] 2L_9430211_SNP [dm6]	A	G	1.530e^-4	0.445	SYNONYMOUS_CODING FucTB UPSTREAM FucTB	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19428795	X_19428795_SNP [dm3] X_19534762_SNP [dm6]	T	G	1.535e^-4	0.445	INTRON CG32532	TF binding site mE1_TFBS_chinmo
2L	8888984	2L_8888984_SNP [dm3] 2L_8888984_SNP [dm6]	A	C	1.536e^-4	0.445	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
2L	9500001	2L_9500001_SNP [dm3] 2L_9500001_SNP [dm6]	T	C	1.542e^-4	0.445	INTRON CG33298
3L	14141764	3L_14141764_SNP [dm3] 3L_14148664_SNP [dm6]	T	C	1.547e^-4	0.445	INTERGENIC	regulatory region REDfly_CRMs
2R	12342332	2R_12342332_SNP [dm3] 2R_16454827_SNP [dm6]	C	G	1.548e^-4	0.445	INTERGENIC
2R	13802874	2R_13802874_SNP [dm3] 2R_17915369_SNP [dm6]	G	A	1.550e^-4	0.445	INTRON Elk
3R	4818874	3R_4818874_SNP [dm3] 3R_8993152_SNP [dm6]	C	T	1.550e^-4	0.445	UPSTREAM CG11975 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	10147779	2L_10147779_SNP [dm3] 2L_10147779_SNP [dm6]	G	A	1.550e^-4	0.445	INTRON CG44153 & 1 other	TF binding site mE1_TFBS_cad
X	18353272	X_18353272_SNP [dm3] X_18459239_SNP [dm6]	C	G	1.556e^-4	0.445	UTR_3_PRIME CG43843 INTRON CG32547
3R	26981967	3R_26981967_SNP [dm3] 3R_31156245_SNP [dm6]	A	T	1.565e^-4	0.445	INTRON Gycbeta100B
2L	8886557	2L_8886557_SNP [dm3] 2L_8886557_SNP [dm6]	A	T	1.566e^-4	0.445	DOWNSTREAM CR44415 INTERGENIC	TF binding site mE1_TFBS_cnc
X	15255366	X_15255366_SNP [dm3] X_15361333_SNP [dm6]	A	G	1.567e^-4	0.445	UPSTREAM Pp1-13C INTRON acj6
2L	8885531	2L_8885531_SNP [dm3] 2L_8885531_SNP [dm6]	T	C	1.569e^-4	0.445	INTERGENIC
2L	7531736	2L_7531736_SNP [dm3] 2L_7531736_SNP [dm6]	T	C	1.571e^-4	0.445	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11183726	2L_11183726_SNP [dm3] 2L_11183726_SNP [dm6]	A	T	1.573e^-4	0.445	INTRON Ca-beta
3L	14062834	3L_14062834_DEL [dm3] 3L_14069734_DEL [dm6]	AT	C	1.576e^-4	0.445	INTRON CG32138
3L	1744145	3L_1744145_SNP [dm3] 3L_1744145_SNP [dm6]	G	A	1.577e^-4	0.445	SYNONYMOUS_CODING Gk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21357876	3L_21357876_SNP [dm3] 3L_21364776_SNP [dm6]	G	T	1.579e^-4	0.445	INTERGENIC
3R	6005696	3R_6005696_SNP [dm3] 3R_10179974_SNP [dm6]	A	G	1.580e^-4	0.445	INTRON CG12814
X	10443207	X_10443207_SNP [dm3] X_10549174_SNP [dm6]	A	T	1.583e^-4	0.445	INTRON spri
3L	3419361	3L_3419361_SNP [dm3] 3L_3419361_SNP [dm6]	T	G	1.586e^-4	0.445	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8888158	2L_8888158_SNP [dm3] 2L_8888158_SNP [dm6]	C	A	1.586e^-4	0.445	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2L	12128708	2L_12128708_SNP [dm3] 2L_12128708_SNP [dm6]	C	G	1.588e^-4	0.445	NON_SYNONYMOUS_CODING CG17211	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5315792	2R_5315792_SNP [dm3] 2R_9428287_SNP [dm6]	G	T	1.590e^-4	0.445	INTRON Pdk
X	14394066	X_14394066_SNP [dm3] X_14500033_SNP [dm6]	C	T	1.592e^-4	0.445	INTERGENIC
2L	8889091	2L_8889091_SNP [dm3] 2L_8889091_SNP [dm6]	T	C	1.596e^-4	0.445	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
3R	6014731	3R_6014731_SNP [dm3] 3R_10189009_SNP [dm6]	G	T	1.597e^-4	0.445	INTRON CG12814	TF binding site mE1_TFBS_Trl
2L	11530697	2L_11530697_SNP [dm3] 2L_11530697_SNP [dm6]	G	T	1.599e^-4	0.445	NON_SYNONYMOUS_CODING CG31706
X	16114869	X_16114869_SNP [dm3] X_16220836_SNP [dm6]	T	G	1.603e^-4	0.445	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	13177632	X_13177632_SNP [dm3] X_13283599_SNP [dm6]	T	A	1.604e^-4	0.445	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
X	11059884	X_11059884_SNP [dm3] X_11165851_SNP [dm6]	T	G	1.605e^-4	0.445	INTERGENIC
2L	12315782	2L_12315782_SNP [dm3] 2L_12315782_SNP [dm6]	T	C	1.611e^-4	0.445	DOWNSTREAM CR45283 EXON CR45282
3R	17806337	3R_17806337_SNP [dm3] 3R_21980615_SNP [dm6]	A	G	1.614e^-4	0.445	INTRON Eip93F
3L	7627092	3L_7627092_SNP [dm3] 3L_7633992_SNP [dm6]	C	T	1.615e^-4	0.445	INTRON CG33275
2R	14653400	2R_14653400_SNP [dm3] 2R_18765895_SNP [dm6]	A	G	1.615e^-4	0.445	INTRON Mctp
2R	12710541	2R_12710541_INS [dm3] 2R_16823036_INS [dm6]	A	AT	1.624e^-4	0.445	INTERGENIC
2L	8887298	2L_8887298_SNP [dm3] 2L_8887298_SNP [dm6]	G	A	1.626e^-4	0.445	DOWNSTREAM CR44415 EXON CR44415	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	1487530	3L_1487530_SNP [dm3] 3L_1487530_SNP [dm6]	C	T	1.631e^-4	0.445	INTRON stet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8195609	2L_8195609_SNP [dm3] 2L_8195609_SNP [dm6]	G	A	1.632e^-4	0.445	INTRON CG8475 EXON CR44116	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8889124	2L_8889124_SNP [dm3] 2L_8889124_SNP [dm6]	G	T	1.633e^-4	0.445	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
2R	10196269	2R_10196269_SNP [dm3] 2R_14308764_SNP [dm6]	C	T	1.635e^-4	0.445	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	13252009	3L_13252009_SNP [dm3] 3L_13258909_SNP [dm6]	A	C	1.635e^-4	0.445	INTRON caps
X	16114873	X_16114873_SNP [dm3] X_16220840_SNP [dm6]	T	A	1.639e^-4	0.445	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	8889161	2L_8889161_SNP [dm3] 2L_8889161_SNP [dm6]	T	A	1.645e^-4	0.445	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
3R	6493388	3R_6493388_SNP [dm3] 3R_10667666_SNP [dm6]	G	T	1.645e^-4	0.445	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10619731	X_10619731_SNP [dm3] X_10725698_SNP [dm6]	G	A	1.648e^-4	0.445	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7063368	2L_7063368_SNP [dm3] 2L_7063368_SNP [dm6]	T	A	1.651e^-4	0.445	UTR_3_PRIME Mnn1 UPSTREAM Sem1 DOWNSTREAM Mnn1	TF binding site mE1_TFBS_cnc
X	16477605	X_16477605_SNP [dm3] X_16583572_SNP [dm6]	A	T	1.652e^-4	0.445	INTRON CanA-14F
2L	9298259	2L_9298259_SNP [dm3] 2L_9298259_SNP [dm6]	T	C	1.653e^-4	0.445	UTR_3_PRIME Ggamma30A
2R	8492658	2R_8492658_SNP [dm3] 2R_12605153_SNP [dm6]	G	T	1.654e^-4	0.445	INTRON Amph
3L	13252007	3L_13252007_SNP [dm3] 3L_13258907_SNP [dm6]	C	T	1.661e^-4	0.445	INTRON caps
3L	3283453	3L_3283453_SNP [dm3] 3L_3283453_SNP [dm6]	G	A	1.661e^-4	0.445	INTRON CG12017
2L	8893464	2L_8893464_SNP [dm3] 2L_8893464_SNP [dm6]	C	A	1.661e^-4	0.445	INTERGENIC
X	6275749	X_6275749_SNP [dm3] X_6381716_SNP [dm6]	C	T	1.661e^-4	0.445	INTERGENIC
X	6275713	X_6275713_SNP [dm3] X_6381680_SNP [dm6]	T	A	1.666e^-4	0.445	INTERGENIC
3R	3898767	3R_3898767_SNP [dm3] 3R_8073045_SNP [dm6]	G	C	1.667e^-4	0.445	INTRON mAChR-B
3L	2570088	3L_2570088_SNP [dm3] 3L_2570088_SNP [dm6]	C	T	1.667e^-4	0.445	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4409420	2L_4409420_SNP [dm3] 2L_4409420_SNP [dm6]	G	A	1.670e^-4	0.445	INTRON CG15431	TF binding site mE1_TFBS_chinmo
2R	17810720	2R_17810720_SNP [dm3] 2R_21923215_SNP [dm6]	T	A	1.673e^-4	0.445	INTRON Fili
2R	11618564	2R_11618564_SNP [dm3] 2R_15731059_SNP [dm6]	T	C	1.678e^-4	0.445	INTRON CG30089
2L	17380275	2L_17380275_SNP [dm3] 2L_17380275_SNP [dm6]	A	C	1.680e^-4	0.445	INTRON Lrch	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	14269408	3R_14269408_SNP [dm3] 3R_18443686_SNP [dm6]	C	A	1.683e^-4	0.445	INTRON fru
3L	3321560	3L_3321560_SNP [dm3] 3L_3321560_SNP [dm6]	C	T	1.686e^-4	0.445	SYNONYMOUS_CODING CG12016 UTR_3_PRIME CG42456 DOWNSTREAM CG11526
2R	11413423	2R_11413423_SNP [dm3] 2R_15525918_SNP [dm6]	C	T	1.687e^-4	0.445	SYNONYMOUS_CODING Khc-73	TF binding site mE1_TFBS_cad
3R	6053866	3R_6053866_SNP [dm3] 3R_10228144_SNP [dm6]	G	A	1.690e^-4	0.445	INTRON CG42795
3L	22973684	3L_22973684_SNP [dm3] 3L_22980584_SNP [dm6]	T	C	1.691e^-4	0.445	INTERGENIC
2L	4679752	2L_4679752_SNP [dm3] 2L_4679752_SNP [dm6]	G	A	1.692e^-4	0.445	INTERGENIC
3L	7628011	3L_7628011_SNP [dm3] 3L_7634911_SNP [dm6]	A	G	1.701e^-4	0.445	INTRON CG33275	TF binding site mE1_TFBS_HSA
2L	12238491	2L_12238491_SNP [dm3] 2L_12238491_SNP [dm6]	C	T	1.702e^-4	0.445	INTRON aret
2L	2373367	2L_2373367_SNP [dm3] 2L_2373367_SNP [dm6]	C	T	1.702e^-4	0.445	SYNONYMOUS_CODING CG3609	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15260872	3R_15260872_SNP [dm3] 3R_19435150_SNP [dm6]	T	C	1.709e^-4	0.445	INTRON CG31221
2R	19366232	2R_19366232_SNP [dm3] 2R_23478709_SNP [dm6]	T	G	1.711e^-4	0.445	INTRON CG43795
2R	14493344	2R_14493344_SNP [dm3] 2R_18605839_SNP [dm6]	G	T	1.712e^-4	0.445	INTRON GEFmeso
2R	14071036	2R_14071036_SNP [dm3] 2R_18183531_SNP [dm6]	T	C	1.714e^-4	0.445	SYNONYMOUS_CODING CG5721 DOWNSTREAM CG33958	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	5785827	3L_5785827_SNP [dm3] 3L_5792727_SNP [dm6]	C	G	1.715e^-4	0.445	SYNONYMOUS_CODING Bre1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3344037	2L_3344037_SNP [dm3] 2L_3344037_SNP [dm6]	C	A	1.716e^-4	0.445	INTRON E23
2R	9090696	2R_9090696_SNP [dm3] 2R_13203191_SNP [dm6]	T	G	1.717e^-4	0.445	SYNONYMOUS_CODING lat UTR_3_PRIME CG34315 DOWNSTREAM Aats-val	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5259336	2R_5259336_SNP [dm3] 2R_9371831_SNP [dm6]	A	G	1.720e^-4	0.445	INTRON CG13954	TF binding site mE1_TFBS_cad
2L	10426632	2L_10426632_SNP [dm3] 2L_10426632_SNP [dm6]	C	T	1.722e^-4	0.445	UPSTREAM KdelR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	6275753	X_6275753_DEL [dm3] X_6381720_DEL [dm6]	AT	A	1.731e^-4	0.445	INTERGENIC
X	10619759	X_10619759_SNP [dm3] X_10725726_SNP [dm6]	C	G	1.733e^-4	0.445	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7627057	3L_7627057_SNP [dm3] 3L_7633957_SNP [dm6]	A	G	1.734e^-4	0.445	INTRON CG33275
3L	7628058	3L_7628058_SNP [dm3] 3L_7634958_SNP [dm6]	C	T	1.734e^-4	0.445	INTRON CG33275	TF binding site mE1_TFBS_HSA
3L	17285205	3L_17285205_SNP [dm3] 3L_17292105_SNP [dm6]	C	G	1.739e^-4	0.445	INTERGENIC
2L	11033203	2L_11033203_SNP [dm3] 2L_11033203_SNP [dm6]	G	A	1.743e^-4	0.445	INTRON Samuel
2L	11024375	2L_11024375_SNP [dm3] 2L_11024375_SNP [dm6]	A	T	1.743e^-4	0.445	INTRON Samuel	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3139659	3L_3139659_SNP [dm3] 3L_3139659_SNP [dm6]	G	A	1.746e^-4	0.445	INTRON CG11537	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3L	10091812	3L_10091812_SNP [dm3] 3L_10098712_SNP [dm6]	G	C	1.748e^-4	0.445	UPSTREAM CG42825 DOWNSTREAM CG42826 INTRON dpr6
X	10441196	X_10441196_SNP [dm3] X_10547163_SNP [dm6]	A	C	1.751e^-4	0.445	UPSTREAM spri INTRON spri	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	6215686	X_6215686_SNP [dm3] X_6321653_SNP [dm6]	C	T	1.752e^-4	0.445	INTRON CG15894
2R	11618541	2R_11618541_SNP [dm3] 2R_15731036_SNP [dm6]	T	G	1.753e^-4	0.445	INTRON CG30089	TF binding site mE1_TFBS_HSA
3L	21084739	3L_21084739_SNP [dm3] 3L_21091639_SNP [dm6]	T	A	1.754e^-4	0.445	INTRON ko
2R	13794746	2R_13794746_SNP [dm3] 2R_17907241_SNP [dm6]	A	T	1.759e^-4	0.445	INTRON Elk
X	14693019	X_14693019_SNP [dm3] X_14798986_SNP [dm6]	G	A	1.760e^-4	0.445	SYNONYMOUS_CODING rut	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15367702	3R_15367702_DEL [dm3] 3R_19541980_DEL [dm6]	TTGACTGTTGA...	T	1.762e^-4	0.445	INTRON Dys
X	6214149	X_6214149_SNP [dm3] X_6320116_SNP [dm6]	T	C	1.763e^-4	0.445	INTRON CG15894
2L	7271315	2L_7271315_SNP [dm3] 2L_7271315_SNP [dm6]	C	G	1.764e^-4	0.445	INTRON Wnt4	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	8894907	2L_8894907_SNP [dm3] 2L_8894907_SNP [dm6]	C	T	1.773e^-4	0.445	INTERGENIC
X	10452013	X_10452013_SNP [dm3] X_10557980_SNP [dm6]	A	C	1.776e^-4	0.445	UPSTREAM spri INTRON spri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	14822665	2L_14822665_SNP [dm3] 2L_14822665_SNP [dm6]	C	T	1.779e^-4	0.445	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	11056499	X_11056499_SNP [dm3] X_11162466_SNP [dm6]	T	C	1.780e^-4	0.445	INTRON Dlic
3L	2538241	3L_2538241_SNP [dm3] 3L_2538241_SNP [dm6]	G	A	1.780e^-4	0.445	INTRON Spn
2L	8885366	2L_8885366_SNP [dm3] 2L_8885366_SNP [dm6]	C	T	1.785e^-4	0.445	INTERGENIC
X	8018181	X_8018181_SNP [dm3] X_8124148_SNP [dm6]	G	A	1.786e^-4	0.445	INTRON cyr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2465701	3L_2465701_SNP [dm3] 3L_2465701_SNP [dm6]	G	C	1.788e^-4	0.445	UTR_3_PRIME CG45186 DOWNSTREAM CG45186 INTRON CG45186
3R	18969906	3R_18969906_SNP [dm3] 3R_23144184_SNP [dm6]	G	T	1.789e^-4	0.445	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	5366948	X_5366948_SNP [dm3] X_5472915_SNP [dm6]	A	T	1.792e^-4	0.445	INTRON SPR
3L	16175496	3L_16175496_SNP [dm3] 3L_16182396_SNP [dm6]	G	T	1.793e^-4	0.445	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11769643	2R_11769643_SNP [dm3] 2R_15882138_SNP [dm6]	T	C	1.796e^-4	0.445	INTRON sli
2R	14059829	2R_14059829_SNP [dm3] 2R_18172324_SNP [dm6]	G	C	1.796e^-4	0.445	UPSTREAM Dgp-1 & 1 other INTRON Dgp-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	19439680	3L_19439680_SNP [dm3] 3L_19446580_SNP [dm6]	A	G	1.799e^-4	0.445	UPSTREAM Chd3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	1381338	3L_1381338_SNP [dm3] 3L_1381338_SNP [dm6]	A	G	1.802e^-4	0.445	DOWNSTREAM tRNA:CR32329 INTRON Ptp61F & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15367692	3R_15367692_SNP [dm3] 3R_19541970_SNP [dm6]	A	G	1.802e^-4	0.445	INTRON Dys
2L	12390846	2L_12390846_SNP [dm3] 2L_12390846_SNP [dm6]	G	T	1.806e^-4	0.445	INTRON bru-2
2L	7111176	2L_7111176_SNP [dm3] 2L_7111176_SNP [dm6]	G	T	1.808e^-4	0.445	INTRON Pvf3
2L	12970055	2L_12970055_SNP [dm3] 2L_12970055_SNP [dm6]	T	G	1.809e^-4	0.445	INTERGENIC
2L	10900096	2L_10900096_SNP [dm3] 2L_10900096_SNP [dm6]	T	G	1.810e^-4	0.445	DOWNSTREAM CG14070 INTERGENIC
3R	6009372	3R_6009372_SNP [dm3] 3R_10183650_SNP [dm6]	G	T	1.814e^-4	0.446	INTRON CG12814
2L	12388015	2L_12388015_SNP [dm3] 2L_12388015_SNP [dm6]	T	C	1.819e^-4	0.446	INTRON bru-2
3R	6013781	3R_6013781_SNP [dm3] 3R_10188059_SNP [dm6]	T	G	1.822e^-4	0.446	UTR_5_PRIME CG12814
2L	4409380	2L_4409380_SNP [dm3] 2L_4409380_SNP [dm6]	G	A	1.822e^-4	0.446	INTRON CG15431	TF binding site mE1_TFBS_chinmo
3L	4998405	3L_4998405_SNP [dm3] 3L_4998405_SNP [dm6]	T	C	1.833e^-4	0.448	INTRON Con	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14072871	2R_14072871_SNP [dm3] 2R_18185366_SNP [dm6]	A	T	1.838e^-4	0.448	SYNONYMOUS_CODING CG33958	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19936113	X_19936113_DEL [dm3] X_20042080_DEL [dm6]	TT	T	1.841e^-4	0.448	INTRON Dop2R
3R	15368093	3R_15368093_SNP [dm3] 3R_19542371_SNP [dm6]	G	T	1.842e^-4	0.448	INTRON Dys
3L	8798464	3L_8798464_SNP [dm3] 3L_8805364_SNP [dm6]	A	G	1.845e^-4	0.448	SYNONYMOUS_CODING CG34427 DOWNSTREAM CG13312	TF binding site mE1_TFBS_chinmo
3L	16334479	3L_16334479_SNP [dm3] 3L_16341379_SNP [dm6]	T	C	1.846e^-4	0.448	SYNONYMOUS_CODING CG4998	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11490612	2L_11490612_SNP [dm3] 2L_11490612_SNP [dm6]	C	A	1.854e^-4	0.448	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	16824746	X_16824746_SNP [dm3] X_16930713_SNP [dm6]	T	G	1.855e^-4	0.448	INTRON CG4928
3R	5427721	3R_5427721_SNP [dm3] 3R_9601999_SNP [dm6]	C	G	1.855e^-4	0.448	INTRON CG8312
3R	5427722	3R_5427722_SNP [dm3] 3R_9602000_SNP [dm6]	C	A	1.855e^-4	0.448	INTRON CG8312
3R	6331221	3R_6331221_SNP [dm3] 3R_10505499_SNP [dm6]	G	A	1.856e^-4	0.448	INTERGENIC
X	11056469	X_11056469_SNP [dm3] X_11162436_SNP [dm6]	A	G	1.859e^-4	0.448	SYNONYMOUS_CODING Dlic
3R	6472585	3R_6472585_SNP [dm3] 3R_10646863_SNP [dm6]	T	C	1.860e^-4	0.448	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
2L	960850	2L_960850_SNP [dm3] 2L_960850_SNP [dm6]	G	A	1.869e^-4	0.449	INTERGENIC
2L	15348138	2L_15348138_SNP [dm3] 2L_15348138_SNP [dm6]	G	C	1.872e^-4	0.449	INTERGENIC
2R	13998657	2R_13998657_SNP [dm3] 2R_18111152_SNP [dm6]	T	G	1.873e^-4	0.449	DOWNSTREAM CG34196 INTERGENIC
3R	6459932	3R_6459932_SNP [dm3] 3R_10634210_SNP [dm6]	A	G	1.886e^-4	0.451	INTRON hth	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11062985	2L_11062985_SNP [dm3] 2L_11062985_SNP [dm6]	G	A	1.889e^-4	0.451	INTRON Samuel
3L	4143576	3L_4143576_SNP [dm3] 3L_4143576_SNP [dm6]	C	G	1.889e^-4	0.451	NON_SYNONYMOUS_CODING CG32260 INTRON CG32260
2R	11618547	2R_11618547_SNP [dm3] 2R_15731042_SNP [dm6]	T	C	1.890e^-4	0.451	INTRON CG30089	TF binding site mE1_TFBS_HSA
3L	1206795	3L_1206795_SNP [dm3] 3L_1206795_SNP [dm6]	G	A	1.891e^-4	0.451	UPSTREAM LysB INTRON mwh	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10006718	3L_10006718_SNP [dm3] 3L_10013618_SNP [dm6]	C	T	1.894e^-4	0.451	INTRON dpr6	TF binding site mE1_TFBS_HSA
X	10109063	X_10109063_SNP [dm3] X_10215030_SNP [dm6]	G	A	1.897e^-4	0.451	SYNONYMOUS_CODING CG2962 UTR_3_PRIME l_1_G0230 DOWNSTREAM l_1_G0230	TF binding site mE1_TFBS_chinmo
3R	16037302	3R_16037302_SNP [dm3] 3R_20211580_SNP [dm6]	C	T	1.906e^-4	0.451	INTRON Nlg4	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	12128707	2L_12128707_SNP [dm3] 2L_12128707_SNP [dm6]	G	C	1.906e^-4	0.451	NON_SYNONYMOUS_CODING CG17211	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16406794	3R_16406794_SNP [dm3] 3R_20581072_SNP [dm6]	A	G	1.908e^-4	0.451	DOWNSTREAM Srp14 & 1 other INTRON CG34008	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	10441651	2L_10441651_SNP [dm3] 2L_10441651_SNP [dm6]	G	T	1.908e^-4	0.451	UPSTREAM loh DOWNSTREAM CG13142 & 1 other INTERGENIC
2R	13364433	2R_13364433_SNP [dm3] 2R_17476928_SNP [dm6]	A	G	1.910e^-4	0.451	UPSTREAM CG6520 DOWNSTREAM CG43110 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	8271519	2L_8271519_SNP [dm3] 2L_8271519_SNP [dm6]	T	G	1.911e^-4	0.451	INTRON Btk29A
X	15695722	X_15695722_SNP [dm3] X_15801689_SNP [dm6]	G	A	1.916e^-4	0.451	SYNONYMOUS_CODING PGRP-LE DOWNSTREAM CG15602	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9896984	2L_9896984_SNP [dm3] 2L_9896984_SNP [dm6]	C	T	1.918e^-4	0.451	SYNONYMOUS_CODING RpS2 DOWNSTREAM Bka & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12227429	2L_12227429_SNP [dm3] 2L_12227429_SNP [dm6]	A	G	1.920e^-4	0.451	INTRON aret
3R	5161996	3R_5161996_SNP [dm3] 3R_9336274_SNP [dm6]	T	A	1.924e^-4	0.451	INTRON CG8121
X	2244601	X_2244601_SNP [dm3] X_2350568_SNP [dm6]	C	A	1.925e^-4	0.451	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
2L	8275470	2L_8275470_SNP [dm3] 2L_8275470_SNP [dm6]	T	C	1.927e^-4	0.451	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6045128	2L_6045128_SNP [dm3] 2L_6045128_SNP [dm6]	G	A	1.932e^-4	0.452	SYNONYMOUS_CODING ade2 DOWNSTREAM mir-966	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	8885403	2L_8885403_SNP [dm3] 2L_8885403_SNP [dm6]	G	A	1.934e^-4	0.452	INTERGENIC
3L	19408592	3L_19408592_SNP [dm3] 3L_19415492_SNP [dm6]	A	G	1.944e^-4	0.452	INTERGENIC
X	18769859	X_18769859_SNP [dm3] X_18875826_SNP [dm6]	T	C	1.944e^-4	0.452	SYNONYMOUS_CODING CG34401	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	8888763	2L_8888763_SNP [dm3] 2L_8888763_SNP [dm6]	T	C	1.945e^-4	0.452	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	19582084	2L_19582084_DEL [dm3] 2L_19582084_DEL [dm6]	GCGGCGACCGCTCCTAGCG...	A	1.946e^-4	0.452	DOWNSTREAM CG10262	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14094763	2R_14094763_SNP [dm3] 2R_18207258_SNP [dm6]	G	A	1.947e^-4	0.452	UPSTREAM CG30114 INTERGENIC
2R	5259416	2R_5259416_SNP [dm3] 2R_9371911_SNP [dm6]	G	A	1.950e^-4	0.452	INTRON CG13954
2L	8889402	2L_8889402_SNP [dm3] 2L_8889402_SNP [dm6]	C	T	1.953e^-4	0.452	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens
2R	4493405	2R_4493405_SNP [dm3] 2R_8605900_SNP [dm6]	A	T	1.960e^-4	0.453	INTRON rgr	TF binding site mE1_TFBS_cad
3R	13958891	3R_13958891_SNP [dm3] 3R_18133169_SNP [dm6]	A	T	1.969e^-4	0.453	UTR_3_PRIME sr
2L	11049137	2L_11049137_SNP [dm3] 2L_11049137_SNP [dm6]	T	A	1.970e^-4	0.453	INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	18160684	X_18160684_SNP [dm3] X_18266651_SNP [dm6]	A	G	1.972e^-4	0.453	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10449782	X_10449782_SNP [dm3] X_10555749_SNP [dm6]	T	C	1.976e^-4	0.453	UTR_5_PRIME spri UPSTREAM spri INTRON spri
2R	6569010	2R_6569010_SNP [dm3] 2R_10681505_SNP [dm6]	T	C	1.978e^-4	0.453	INTRON stan	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	12315731	2L_12315731_SNP [dm3] 2L_12315731_SNP [dm6]	G	A	1.978e^-4	0.453	DOWNSTREAM CR45282 & 1 other INTERGENIC
2L	4409387	2L_4409387_SNP [dm3] 2L_4409387_SNP [dm6]	T	G	1.979e^-4	0.453	INTRON CG15431	TF binding site mE1_TFBS_chinmo
X	5326933	X_5326933_SNP [dm3] X_5432900_SNP [dm6]	T	C	1.980e^-4	0.453	UPSTREAM CR44471 DOWNSTREAM CG15784 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	6389453	3R_6389453_INS [dm3] 3R_10563731_INS [dm6]	A	AA	1.981e^-4	0.453	INTRON hth
3R	20016232	3R_20016232_SNP [dm3] 3R_24190510_SNP [dm6]	G	A	1.984e^-4	0.453	SYNONYMOUS_CODING jnj
2L	10363986	2L_10363986_SNP [dm3] 2L_10363986_SNP [dm6]	T	G	1.984e^-4	0.453	UTR_3_PRIME pim UPSTREAM lft	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	4439934	3R_4439934_SNP [dm3] 3R_8614212_SNP [dm6]	G	A	2.000e^-4	0.453	INTRON 5-HT2B	TF binding site mE1_TFBS_inv
3R	814548	3R_814548_SNP [dm3] 3R_4988826_SNP [dm6]	T	A	2.009e^-4	0.453	INTRON CG2022	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	11933255	3L_11933255_SNP [dm3] 3L_11940155_SNP [dm6]	T	A	2.010e^-4	0.453	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3498092	3R_3498092_SNP [dm3] 3R_7672370_SNP [dm6]	G	T	2.014e^-4	0.453	INTRON Nlg1
X	6124507	X_6124507_SNP [dm3] X_6230474_SNP [dm6]	C	T	2.014e^-4	0.453	SYNONYMOUS_CODING CG14446
2L	12127758	2L_12127758_SNP [dm3] 2L_12127758_SNP [dm6]	C	G	2.015e^-4	0.453	SYNONYMOUS_CODING CG17211
3L	2683176	3L_2683176_SNP [dm3] 3L_2683176_SNP [dm6]	G	A	2.016e^-4	0.453	INTRON Fife
2L	13230850	2L_13230850_SNP [dm3] 2L_13230850_SNP [dm6]	C	T	2.022e^-4	0.453	DOWNSTREAM CG16815 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	3529013	2L_3529013_SNP [dm3] 2L_3529013_SNP [dm6]	G	A	2.023e^-4	0.453	INTRON Spindly
X	5502595	X_5502595_SNP [dm3] X_5608562_SNP [dm6]	C	A	2.024e^-4	0.453	INTRON Vsx1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	18846963	X_18846963_SNP [dm3] X_18952930_SNP [dm6]	T	G	2.025e^-4	0.453	INTRON CG43759
X	6275723	X_6275723_INS [dm3] X_6381690_INS [dm6]	T	TA	2.026e^-4	0.453	INTERGENIC
X	6275728	X_6275728_MNP [dm3] X_6381695_MNP [dm6]	TCT	GAA	2.026e^-4	0.453	INTERGENIC
X	6275735	X_6275735_MNP [dm3] X_6381702_MNP [dm6]	GCA	CGT	2.026e^-4	0.453	INTERGENIC
X	6275742	X_6275742_DEL [dm3] X_6381709_DEL [dm6]	GTG	T	2.026e^-4	0.453	INTERGENIC
3R	6052111	3R_6052111_SNP [dm3] 3R_10226389_SNP [dm6]	G	T	2.028e^-4	0.453	UPSTREAM CG42795 DOWNSTREAM CG34107 INTRON CG42795	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13022392	2R_13022392_SNP [dm3] 2R_17134887_SNP [dm6]	G	A	2.031e^-4	0.453	UTR_3_PRIME CG11400 UPSTREAM CR44391 DOWNSTREAM CG11400
2R	7939211	2R_7939211_SNP [dm3] 2R_12051706_SNP [dm6]	C	G	2.035e^-4	0.453	UTR_5_PRIME CG30039
X	18769843	X_18769843_SNP [dm3] X_18875810_SNP [dm6]	C	T	2.036e^-4	0.453	SYNONYMOUS_CODING CG34401	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	7454686	X_7454686_SNP [dm3] X_7560653_SNP [dm6]	A	G	2.039e^-4	0.453	INTERGENIC
3L	11556631	3L_11556631_INS [dm3] 3L_11563531_INS [dm6]	G	GTCCT	2.042e^-4	0.453	UTR_3_PRIME CG7394 UPSTREAM CG33267 DOWNSTREAM CG7394
X	17285172	X_17285172_SNP [dm3] X_17391139_SNP [dm6]	T	C	2.044e^-4	0.453	INTERGENIC
3L	4312147	3L_4312147_SNP [dm3] 3L_4312147_SNP [dm6]	A	G	2.045e^-4	0.453	INTERGENIC
3L	5238006	3L_5238006_SNP [dm3] 3L_5244906_SNP [dm6]	C	T	2.048e^-4	0.453	INTRON shep
3R	16037293	3R_16037293_SNP [dm3] 3R_20211571_SNP [dm6]	C	T	2.049e^-4	0.453	INTRON Nlg4	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	7628047	3L_7628047_SNP [dm3] 3L_7634947_SNP [dm6]	C	T	2.049e^-4	0.453	INTRON CG33275	TF binding site mE1_TFBS_HSA
2L	2893299	2L_2893299_SNP [dm3] 2L_2893299_SNP [dm6]	G	A	2.052e^-4	0.453	INTRON lilli	TF binding site BDTNP1_TFBS_twi
2L	17295691	2L_17295691_SNP [dm3] 2L_17295691_SNP [dm6]	T	G	2.054e^-4	0.453	INTERGENIC
3R	9948704	3R_9948704_SNP [dm3] 3R_14122982_SNP [dm6]	T	C	2.059e^-4	0.454	SYNONYMOUS_CODING twf UPSTREAM Abi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	7171754	3R_7171754_SNP [dm3] 3R_11346032_SNP [dm6]	A	G	2.064e^-4	0.454	DOWNSTREAM KP78a & 1 other INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5820472	3R_5820472_SNP [dm3] 3R_9994750_SNP [dm6]	G	A	2.074e^-4	0.454	UTR_3_PRIME Glut4EF DOWNSTREAM Gr85a
3R	6477712	3R_6477712_SNP [dm3] 3R_10651990_SNP [dm6]	T	A	2.075e^-4	0.454	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_prd
3R	3151154	3R_3151154_SNP [dm3] 3R_7325432_SNP [dm6]	T	C	2.086e^-4	0.454	UPSTREAM CG44335 INTERGENIC
2R	10720283	2R_10720283_SNP [dm3] 2R_14832778_SNP [dm6]	T	A	2.088e^-4	0.454	UPSTREAM CG10205 INTERGENIC
2L	10574780	2L_10574780_SNP [dm3] 2L_10574780_SNP [dm6]	A	C	2.088e^-4	0.454	INTRON Trim9
3L	10023182	3L_10023182_SNP [dm3] 3L_10030082_SNP [dm6]	A	C	2.088e^-4	0.454	INTRON dpr6 & 1 other
3L	10023224	3L_10023224_SNP [dm3] 3L_10030124_SNP [dm6]	G	A	2.088e^-4	0.454	INTRON dpr6 EXON CR45155
3L	10023258	3L_10023258_DEL [dm3] 3L_10030158_DEL [dm6]	GGATTTTTAAA...	G	2.088e^-4	0.454	UPSTREAM CR45155 INTRON dpr6
3L	10023279	3L_10023279_SNP [dm3] 3L_10030179_SNP [dm6]	A	C	2.088e^-4	0.454	UPSTREAM CR45155 INTRON dpr6
3L	10023287	3L_10023287_SNP [dm3] 3L_10030187_SNP [dm6]	G	T	2.088e^-4	0.454	UPSTREAM CR45155 INTRON dpr6
X	20731281	X_20731281_SNP [dm3] X_20860254_SNP [dm6]	A	G	2.092e^-4	0.454	INTRON shakB
3R	1288929	3R_1288929_SNP [dm3] 3R_5463207_SNP [dm6]	A	C	2.094e^-4	0.454	UPSTREAM PEK INTRON PEK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3881124	3L_3881124_SNP [dm3] 3L_3881124_SNP [dm6]	A	G	2.096e^-4	0.455	INTERGENIC
2R	1113712	2R_1113712_SNP [dm3] 2R_5226207_SNP [dm6]	T	A	2.105e^-4	0.455	INTRON Nipped-A
2L	13230986	2L_13230986_SNP [dm3] 2L_13230986_SNP [dm6]	A	G	2.113e^-4	0.455	DOWNSTREAM CG16815 INTERGENIC	TF binding site BDTNP1_TFBS_hb
X	16682132	X_16682132_SNP [dm3] X_16788099_SNP [dm6]	G	A	2.114e^-4	0.455	SYNONYMOUS_CODING Sap30	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	12774502	2R_12774502_SNP [dm3] 2R_16886997_SNP [dm6]	C	G	2.116e^-4	0.455	INTRON CG8910
2R	12774510	2R_12774510_SNP [dm3] 2R_16887005_SNP [dm6]	A	G	2.116e^-4	0.455	INTRON CG8910
X	6275720	X_6275720_SNP [dm3] X_6381687_SNP [dm6]	T	G	2.117e^-4	0.455	INTERGENIC
2L	4234697	2L_4234697_SNP [dm3] 2L_4234697_SNP [dm6]	A	T	2.118e^-4	0.455	INTERGENIC
2L	14391209	2L_14391209_SNP [dm3] 2L_14391209_SNP [dm6]	G	A	2.120e^-4	0.455	SYNONYMOUS_CODING elB	TF binding site mE1_TFBS_chinmo
3L	16336750	3L_16336750_SNP [dm3] 3L_16343650_SNP [dm6]	A	T	2.122e^-4	0.455	INTRON CG4998	TF binding site mE1_TFBS_cad
3L	21521657	3L_21521657_SNP [dm3] 3L_21528557_SNP [dm6]	A	G	2.122e^-4	0.455	NON_SYNONYMOUS_CODING CG32442 UTR_3_PRIME CG32442 DOWNSTREAM CG7611 EXON CR43877	TF binding site BDTNP1_TFBS_Med
2L	1216389	2L_1216389_SNP [dm3] 2L_1216389_SNP [dm6]	G	T	2.125e^-4	0.455	DOWNSTREAM CR43263 INTERGENIC
2R	13417465	2R_13417465_SNP [dm3] 2R_17529960_SNP [dm6]	G	A	2.126e^-4	0.455	INTRON Patronin
2R	17810675	2R_17810675_SNP [dm3] 2R_21923170_SNP [dm6]	G	A	2.135e^-4	0.456	INTRON Fili
X	7635237	X_7635237_SNP [dm3] X_7741204_SNP [dm6]	A	C	2.139e^-4	0.456	INTERGENIC
3R	5151733	3R_5151733_SNP [dm3] 3R_9326011_SNP [dm6]	T	A	2.141e^-4	0.456	INTRON CG8861
2R	20134871	2R_20134871_SNP [dm3] 2R_24247348_SNP [dm6]	T	A	2.145e^-4	0.457	INTRON nord
3L	7109887	3L_7109887_SNP [dm3] 3L_7116787_SNP [dm6]	T	C	2.147e^-4	0.457	INTRON form3
3R	25882076	3R_25882076_SNP [dm3] 3R_30056354_SNP [dm6]	G	T	2.155e^-4	0.457	NON_SYNONYMOUS_CODING CG15526 UPSTREAM CG7950 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8889282	2L_8889282_SNP [dm3] 2L_8889282_SNP [dm6]	A	G	2.156e^-4	0.457	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
3R	24768402	3R_24768402_SNP [dm3] 3R_28942680_SNP [dm6]	A	T	2.161e^-4	0.457	INTRON CG14521	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13254546	3L_13254546_SNP [dm3] 3L_13261446_SNP [dm6]	G	T	2.161e^-4	0.457	INTRON caps
3R	24085828	3R_24085828_SNP [dm3] 3R_28260106_SNP [dm6]	T	C	2.166e^-4	0.458	INTERGENIC
X	18353219	X_18353219_SNP [dm3] X_18459186_SNP [dm6]	A	C	2.168e^-4	0.458	UTR_3_PRIME CG43843 INTRON CG32547
3R	6499290	3R_6499290_SNP [dm3] 3R_10673568_SNP [dm6]	T	A	2.174e^-4	0.459	INTERGENIC
X	4982615	X_4982615_SNP [dm3] X_5088582_SNP [dm6]	T	C	2.177e^-4	0.459	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7366187	3L_7366187_SNP [dm3] 3L_7373087_SNP [dm6]	G	C	2.188e^-4	0.46	UTR_3_PRIME akirin DOWNSTREAM akirin & 1 other
X	19610758	X_19610758_SNP [dm3] X_19716725_SNP [dm6]	T	A	2.191e^-4	0.46	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2561402	3L_2561402_SNP [dm3] 3L_2561402_SNP [dm6]	T	C	2.194e^-4	0.46	INTRON msn
2L	9499947	2L_9499947_SNP [dm3] 2L_9499947_SNP [dm6]	A	C	2.197e^-4	0.46	INTRON CG33298
3R	15368946	3R_15368946_SNP [dm3] 3R_19543224_SNP [dm6]	C	G	2.197e^-4	0.46	INTRON Dys
X	6275751	X_6275751_SNP [dm3] X_6381718_SNP [dm6]	C	A	2.198e^-4	0.46	INTERGENIC
3L	3320237	3L_3320237_SNP [dm3] 3L_3320237_SNP [dm6]	A	T	2.200e^-4	0.46	UPSTREAM CG12016 INTRON CG12016 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Stat92E
2L	8888953	2L_8888953_SNP [dm3] 2L_8888953_SNP [dm6]	A	T	2.201e^-4	0.46	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
3L	2121607	3L_2121607_SNP [dm3] 3L_2121607_SNP [dm6]	A	C	2.216e^-4	0.462	INTRON zormin	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5412727	X_5412727_SNP [dm3] X_5518694_SNP [dm6]	T	C	2.218e^-4	0.462	UTR_3_PRIME CG12730	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	4597815	X_4597815_SNP [dm3] X_4703782_SNP [dm6]	C	A	2.219e^-4	0.462	SYNONYMOUS_CODING l_1_G0334	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	18769849	X_18769849_SNP [dm3] X_18875816_SNP [dm6]	C	T	2.220e^-4	0.462	SYNONYMOUS_CODING CG34401	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	893329	2L_893329_SNP [dm3] 2L_893329_SNP [dm6]	A	G	2.227e^-4	0.462	INTERGENIC
2L	8916250	2L_8916250_DEL [dm3] 2L_8916250_DEL [dm6]	TT	T	2.234e^-4	0.462	INTRON CG34398
X	20678460	X_20678460_SNP [dm3] X_20807433_SNP [dm6]	A	G	2.238e^-4	0.462	INTRON shakB
X	9341644	X_9341644_SNP [dm3] X_9447611_SNP [dm6]	T	C	2.241e^-4	0.462	INTRON mgl	TF binding site BDTNP1_TFBS_dl
2L	9090382	2L_9090382_SNP [dm3] 2L_9090382_SNP [dm6]	C	T	2.244e^-4	0.462	DOWNSTREAM Toll-4 INTERGENIC
3L	7514571	3L_7514571_SNP [dm3] 3L_7521471_SNP [dm6]	T	A	2.248e^-4	0.462	INTRON ltl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	15097662	X_15097662_DEL [dm3] X_15203629_DEL [dm6]	ATA	A	2.248e^-4	0.462	INTERGENIC	TF binding site mE1_TFBS_inv
2L	6114056	2L_6114056_SNP [dm3] 2L_6114056_SNP [dm6]	C	A	2.248e^-4	0.462	INTRON stai
3L	22992897	3L_22992897_SNP [dm3] 3L_22999797_SNP [dm6]	T	C	2.248e^-4	0.462	INTRON nrm	transposable element FlyBase
2L	10873583	2L_10873583_DEL [dm3] 2L_10873583_DEL [dm6]	TGA	T	2.252e^-4	0.462	INTERGENIC
X	2169087	X_2169087_SNP [dm3] X_2275054_SNP [dm6]	A	T	2.256e^-4	0.462	UTR_5_PRIME CG2918 UPSTREAM CG2918 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
3R	12644291	3R_12644291_SNP [dm3] 3R_16818569_SNP [dm6]	C	T	2.257e^-4	0.462	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3710001	X_3710001_SNP [dm3] X_3815968_SNP [dm6]	G	A	2.258e^-4	0.462	INTRON ec	TF binding site BDTNP1_TFBS_twi
2L	7500266	2L_7500266_SNP [dm3] 2L_7500266_SNP [dm6]	A	G	2.258e^-4	0.462	SYNONYMOUS_CODING RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	19564882	3R_19564882_SNP [dm3] 3R_23739160_SNP [dm6]	C	G	2.259e^-4	0.462	INTRON Hmgcr
2L	15343939	2L_15343939_SNP [dm3] 2L_15343939_SNP [dm6]	G	A	2.260e^-4	0.462	INTERGENIC
2L	8888726	2L_8888726_SNP [dm3] 2L_8888726_SNP [dm6]	C	T	2.263e^-4	0.462	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3L	3320106	3L_3320106_SNP [dm3] 3L_3320106_SNP [dm6]	G	A	2.264e^-4	0.462	UPSTREAM PIG-C & 1 other INTRON CG12016 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
X	2839549	X_2839549_SNP [dm3] X_2945516_SNP [dm6]	T	C	2.268e^-4	0.462	UTR_5_PRIME CG14423 DOWNSTREAM CG14422 INTRON kirre	TF binding site mE1_TFBS_inv
3R	27068247	3R_27068247_SNP [dm3] 3R_31242525_SNP [dm6]	A	C	2.270e^-4	0.462	INTRON qless
2L	16468939	2L_16468939_DEL [dm3] 2L_16468939_DEL [dm6]	TTTATGGGGGATCT...	T	2.275e^-4	0.462	INTRON dac
3R	1693922	3R_1693922_SNP [dm3] 3R_5868200_SNP [dm6]	C	T	2.276e^-4	0.462	INTRON CG34113
2L	10479010	2L_10479010_SNP [dm3] 2L_10479010_SNP [dm6]	T	A	2.285e^-4	0.462	INTRON RluA-2
2R	8778537	2R_8778537_SNP [dm3] 2R_12891032_SNP [dm6]	A	G	2.286e^-4	0.462	INTRON vg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	969007	2R_969007_SNP [dm3] 2R_5081502_SNP [dm6]	C	G	2.289e^-4	0.462	DOWNSTREAM CR43360 INTERGENIC	transposable element FlyBase
2L	12231098	2L_12231098_SNP [dm3] 2L_12231098_SNP [dm6]	C	G	2.292e^-4	0.462	INTRON aret
3R	15093353	3R_15093353_SNP [dm3] 3R_19267631_SNP [dm6]	T	A	2.293e^-4	0.462	INTERGENIC
2L	14532715	2L_14532715_SNP [dm3] 2L_14532715_SNP [dm6]	T	C	2.293e^-4	0.462	EXON CR44852
3L	1720617	3L_1720617_SNP [dm3] 3L_1720617_SNP [dm6]	T	A	2.294e^-4	0.462	UTR_3_PRIME CG18171 INTRON drpr
2R	19281394	2R_19281394_SNP [dm3] 2R_23393871_SNP [dm6]	G	C	2.295e^-4	0.462	INTRON CG3530	TF binding site mE1_TFBS_chinmo
X	5721290	X_5721290_SNP [dm3] X_5827257_SNP [dm6]	G	A	2.300e^-4	0.462	INTRON CG15765
X	10968315	X_10968315_SNP [dm3] X_11074282_SNP [dm6]	A	C	2.305e^-4	0.463	NON_SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
3R	23565997	3R_23565997_SNP [dm3] 3R_27740275_SNP [dm6]	A	G	2.311e^-4	0.463	INTRON Ets98B
3R	6099893	3R_6099893_SNP [dm3] 3R_10274171_SNP [dm6]	G	A	2.314e^-4	0.463	INTRON CG43143
X	12850144	X_12850144_SNP [dm3] X_12956111_SNP [dm6]	C	G	2.315e^-4	0.463	INTRON hec	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12458059	2L_12458059_SNP [dm3] 2L_12458059_SNP [dm6]	T	A	2.318e^-4	0.463	SYNONYMOUS_CODING bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	12715779	2R_12715779_SNP [dm3] 2R_16828274_SNP [dm6]	G	A	2.318e^-4	0.463	UPSTREAM CR43650 DOWNSTREAM CG34460 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3063372	2L_3063372_SNP [dm3] 2L_3063372_SNP [dm6]	G	A	2.321e^-4	0.463	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3059692	2L_3059692_SNP [dm3] 2L_3059692_SNP [dm6]	C	G	2.325e^-4	0.463	NON_SYNONYMOUS_CODING CG3523 UTR_5_PRIME CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_Trl
X	7266024	X_7266024_SNP [dm3] X_7371991_SNP [dm6]	G	A	2.327e^-4	0.463	INTRON CG1677 & 1 other	TF binding site mE1_TFBS_HSA
2L	5335596	2L_5335596_SNP [dm3] 2L_5335596_SNP [dm6]	C	T	2.329e^-4	0.463	UTR_5_PRIME fusl INTRON fusl
X	16114865	X_16114865_SNP [dm3] X_16220832_SNP [dm6]	T	G	2.329e^-4	0.463	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	17682784	3R_17682784_SNP [dm3] 3R_21857062_SNP [dm6]	G	C	2.340e^-4	0.464	UPSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	4558867	2L_4558867_SNP [dm3] 2L_4558867_SNP [dm6]	G	A	2.341e^-4	0.464	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16349058	3R_16349058_SNP [dm3] 3R_20523336_SNP [dm6]	G	A	2.345e^-4	0.464	INTERGENIC
2R	8687658	2R_8687658_SNP [dm3] 2R_12800153_SNP [dm6]	G	A	2.346e^-4	0.464	SYNONYMOUS_CODING sca UPSTREAM CR45137	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8927745	X_8927745_DEL [dm3] X_9033712_DEL [dm6]	TTTTTCC	T	2.347e^-4	0.464	INTRON CR43836 & 1 other
3L	7994096	3L_7994096_DEL [dm3] 3L_8000996_DEL [dm6]	AAGAGAGTA	A	2.351e^-4	0.464	INTRON nmo
X	8190948	X_8190948_INS [dm3] X_8296915_INS [dm6]	A	ACGGACTTAAGATCAAA...	2.351e^-4	0.464	INTRON nAChRalpha3
2L	9114043	2L_9114043_SNP [dm3] 2L_9114043_SNP [dm6]	G	A	2.361e^-4	0.465	DOWNSTREAM Or30a INTERGENIC
X	6275746	X_6275746_SNP [dm3] X_6381713_SNP [dm6]	A	T	2.363e^-4	0.465	INTERGENIC
2L	8981613	2L_8981613_SNP [dm3] 2L_8981613_SNP [dm6]	T	G	2.367e^-4	0.465	DOWNSTREAM CG18662 INTRON CG13101
2R	11030758	2R_11030758_SNP [dm3] 2R_15143253_SNP [dm6]	A	G	2.370e^-4	0.465	SYNONYMOUS_CODING chn UTR_3_PRIME chn	TF binding site mE1_TFBS_cad
3L	21388080	3L_21388080_SNP [dm3] 3L_21394980_SNP [dm6]	G	A	2.373e^-4	0.465	INTRON rgn
2L	712435	2L_712435_SNP [dm3] 2L_712435_SNP [dm6]	T	C	2.374e^-4	0.465	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3L	8622437	3L_8622437_SNP [dm3] 3L_8629337_SNP [dm6]	C	T	2.375e^-4	0.465	UPSTREAM Zasp66 INTRON Zasp66	TF binding site BDTNP1_TFBS_da
3R	5704329	3R_5704329_SNP [dm3] 3R_9878607_SNP [dm6]	T	C	2.376e^-4	0.465	UPSTREAM CR45029 INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8880094	2L_8880094_SNP [dm3] 2L_8880094_SNP [dm6]	C	T	2.384e^-4	0.465	INTERGENIC
3L	19429608	3L_19429608_SNP [dm3] 3L_19436508_SNP [dm6]	G	A	2.384e^-4	0.465	INTERGENIC
3R	10530161	3R_10530161_DEL [dm3] 3R_14704439_DEL [dm6]	GTCTGTCTGTCTGTTGATTG...	G	2.386e^-4	0.465	INTRON kibra
3L	416904	3L_416904_SNP [dm3] 3L_416904_SNP [dm6]	A	G	2.394e^-4	0.465	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1216205	2L_1216205_SNP [dm3] 2L_1216205_SNP [dm6]	C	G	2.399e^-4	0.465	UPSTREAM CR45346 DOWNSTREAM CR43263 INTERGENIC
2L	12050914	2L_12050914_SNP [dm3] 2L_12050914_SNP [dm6]	T	C	2.400e^-4	0.465	SYNONYMOUS_CODING CG14945 DOWNSTREAM JhI-21
X	6275686	X_6275686_SNP [dm3] X_6381653_SNP [dm6]	A	T	2.400e^-4	0.465	INTERGENIC
2R	12710548	2R_12710548_SNP [dm3] 2R_16823043_SNP [dm6]	A	T	2.404e^-4	0.465	INTERGENIC
X	20446496	X_20446496_SNP [dm3] X_20575469_SNP [dm6]	A	T	2.404e^-4	0.465	DOWNSTREAM CG42580 INTERGENIC
2R	10248333	2R_10248333_SNP [dm3] 2R_14360828_SNP [dm6]	A	G	2.405e^-4	0.465	UPSTREAM Arc1 EXON CR10102	TF binding site mE1_TFBS_chinmo
3R	5990903	3R_5990903_SNP [dm3] 3R_10165181_SNP [dm6]	T	C	2.409e^-4	0.465	SYNONYMOUS_CODING Best1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	15367623	3R_15367623_SNP [dm3] 3R_19541901_SNP [dm6]	A	T	2.414e^-4	0.465	INTRON Dys
3R	6011144	3R_6011144_SNP [dm3] 3R_10185422_SNP [dm6]	G	A	2.418e^-4	0.465	INTRON CG12814
3L	8957979	3L_8957979_SNP [dm3] 3L_8964879_SNP [dm6]	G	T	2.422e^-4	0.465	UPSTREAM CG5660 DOWNSTREAM CG5653 INTERGENIC
X	10252295	X_10252295_SNP [dm3] X_10358262_SNP [dm6]	T	C	2.423e^-4	0.465	NON_SYNONYMOUS_CODING l_1_G0289
X	17026490	X_17026490_SNP [dm3] X_17132457_SNP [dm6]	T	G	2.426e^-4	0.465	INTRON CG5004
2R	17140760	2R_17140760_SNP [dm3] 2R_21253255_SNP [dm6]	T	C	2.427e^-4	0.465	INTERGENIC
3R	25002934	3R_25002934_SNP [dm3] 3R_29177212_SNP [dm6]	C	A	2.427e^-4	0.465	INTRON CG14509
3L	11226333	3L_11226333_SNP [dm3] 3L_11233233_SNP [dm6]	T	C	2.428e^-4	0.465	SYNONYMOUS_CODING Ir68a
2L	3059151	2L_3059151_SNP [dm3] 2L_3059151_SNP [dm6]	G	A	2.430e^-4	0.465	INTRON CG3523	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	8512731	X_8512731_SNP [dm3] X_8618698_SNP [dm6]	C	T	2.432e^-4	0.465	INTERGENIC	regulatory region REDfly_CRMs
X	6275719	X_6275719_SNP [dm3] X_6381686_SNP [dm6]	T	A	2.433e^-4	0.465	INTERGENIC
3R	9955053	3R_9955053_SNP [dm3] 3R_14129331_SNP [dm6]	C	T	2.435e^-4	0.465	INTRON RpII140	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14176859	2R_14176859_SNP [dm3] 2R_18289354_SNP [dm6]	A	T	2.440e^-4	0.465	UPSTREAM sbb INTRON sbb & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
2R	10702188	2R_10702188_SNP [dm3] 2R_14814683_SNP [dm6]	C	T	2.444e^-4	0.466	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	5412729	X_5412729_SNP [dm3] X_5518696_SNP [dm6]	C	T	2.447e^-4	0.466	UTR_3_PRIME CG12730	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	10137963	2L_10137963_SNP [dm3] 2L_10137963_SNP [dm6]	T	A	2.451e^-4	0.466	INTRON CG44153
2L	8889164	2L_8889164_SNP [dm3] 2L_8889164_SNP [dm6]	C	A	2.452e^-4	0.466	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk
2L	5666321	2L_5666321_SNP [dm3] 2L_5666321_SNP [dm6]	T	G	2.456e^-4	0.466	INTRON Hsp60C
3L	11193431	3L_11193431_SNP [dm3] 3L_11200331_SNP [dm6]	A	T	2.460e^-4	0.466	SPLICE_SITE_REGION CG7607 INTRON Plod & 1 other
3R	11594012	3R_11594012_MNP [dm3] 3R_15768290_MNP [dm6]	CAA	TTT	2.470e^-4	0.467	UPSTREAM CG5623 INTERGENIC
2L	16468627	2L_16468627_SNP [dm3] 2L_16468627_SNP [dm6]	G	C	2.474e^-4	0.467	SYNONYMOUS_CODING dac
3R	9948303	3R_9948303_SNP [dm3] 3R_14122581_SNP [dm6]	C	A	2.476e^-4	0.467	UPSTREAM twf & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	11829328	3L_11829328_SNP [dm3] 3L_11836228_SNP [dm6]	G	C	2.479e^-4	0.467	SYNONYMOUS_CODING CG43064	TF binding site mE1_TFBS_sens
2R	12716021	2R_12716021_DEL [dm3] 2R_16828516_DEL [dm6]	CA	C	2.483e^-4	0.467	UPSTREAM CR43650 DOWNSTREAM CG34460 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	13252060	3L_13252060_SNP [dm3] 3L_13258960_SNP [dm6]	G	A	2.491e^-4	0.467	INTRON caps
3R	6998315	3R_6998315_SNP [dm3] 3R_11172593_SNP [dm6]	C	T	2.494e^-4	0.467	NON_SYNONYMOUS_CODING Ugt35a DOWNSTREAM Ugt86Dj
2L	9630036	2L_9630036_SNP [dm3] 2L_9630036_SNP [dm6]	A	C	2.495e^-4	0.467	INTERGENIC
2R	13802924	2R_13802924_SNP [dm3] 2R_17915419_SNP [dm6]	C	A	2.495e^-4	0.467	SYNONYMOUS_CODING Elk
3L	1638128	3L_1638128_SNP [dm3] 3L_1638128_SNP [dm6]	A	G	2.502e^-4	0.467	SYNONYMOUS_CODING metl UPSTREAM nSyb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	10519528	2L_10519528_DEL [dm3] 2L_10519528_DEL [dm6]	CCTGTGAGCCTTC...	C	2.503e^-4	0.467	DOWNSTREAM Lrr47 INTERGENIC

Missing results

By genomic position
Variant impact
Gene name

SegregVariants_3L phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results